420 189 95 0 chr13 0 74 -101873095 - AluSg/x SINE Alu -115 197 117 380 378 5 15 chr13 221 417 -101872752 - MIR SINE MIR -6 256 63 219 198 8 83 chr13 881 1002 -101872167 + T-rich Low_complexity Low_complexity 5 116 0 2367 60 10 3 chr13 2757 3055 -101870114 + AluY SINE Alu 1 300 -11 692 202 9 0 chr13 3932 4046 -101869123 + FLAM_A SINE Alu 4 118 -15 21 36 0 0 chr13 4580 4608 -101868561 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 4738 4763 -101868406 + AT_rich Low_complexity Low_complexity 1 25 0 1847 148 34 3 chr13 4776 5074 -101868095 - AluSc SINE Alu -2 307 1 1738 68 0 5 chr13 5084 5303 -101867866 - AluY SINE Alu -10 301 84 27 29 0 0 chr13 5473 5507 -101867662 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr13 6072 6095 -101867074 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 6343 6367 -101866802 + AT_rich Low_complexity Low_complexity 1 24 0 725 249 61 0 chr13 6453 6650 -101866519 + L1MA4 LINE L1 6088 6296 -4 21 57 0 0 chr13 7797 7832 -101865337 + AT_rich Low_complexity Low_complexity 1 35 0 217 363 61 52 chr13 8370 8698 -101864471 + L2 LINE L2 2645 2975 -339 1937 101 0 4 chr13 9620 9878 -101863291 + AluY SINE Alu 50 306 -5 263 306 82 41 chr13 10505 10701 -101862468 + MIR SINE MIR 9 212 -50 225 330 66 9 chr13 11148 11254 -101861915 - L2 LINE L2 -256 3057 2946 182 300 114 29 chr13 11246 11316 -101861853 + L2 LINE L2 3168 3243 -29 * 21 36 0 0 chr13 11510 11538 -101861631 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 12063 12093 -101861076 + AT_rich Low_complexity Low_complexity 1 30 0 1698 164 43 16 chr13 12095 12399 -101860770 + AluSx SINE Alu 1 312 0 353 221 307 21 chr13 13093 13233 -101859936 - MER5A DNA MER1_type -1 188 9 24 85 0 0 chr13 13925 13984 -101859185 + AT_rich Low_complexity Low_complexity 1 59 0 395 165 12 0 chr13 15390 15475 -101857694 + (TG)n Simple_repeat Simple_repeat 1 86 0 1099 58 0 0 chr13 15507 15645 -101857524 + AluY SINE Alu 161 298 -13 180 0 0 0 chr13 15649 15669 -101857500 + (TAA)n Simple_repeat Simple_repeat 2 21 0 276 306 25 19 chr13 15867 16024 -101857145 - L1ME3A LINE L1 -243 5927 5770 4195 79 8 11 chr13 16259 17231 -101855938 - L1P2 LINE L1 -338 5816 4851 339 294 71 20 chr13 17232 17484 -101855685 - L1MEc LINE L1 -2721 3494 3230 1413 244 20 11 chr13 17501 17858 -101855311 - MLT1A1 LTR MaLR 0 365 6 842 279 55 40 chr13 17871 18269 -101854900 - L1MEc LINE L1 -3021 3194 2791 1338 224 41 94 chr13 18286 18879 -101854290 - L1MEc LINE L1 -3524 2691 2196 282 56 0 0 chr13 18879 18915 -101854254 + (TA)n Simple_repeat Simple_repeat 1 36 0 1338 224 41 94 chr13 18915 19156 -101854013 - L1MEc LINE L1 -4019 2196 1944 248 231 58 70 chr13 19309 19465 -101853704 - L1MEc LINE L1 -5270 1126 973 * 931 334 84 36 chr13 19433 20122 -101853047 - L1MEc LINE L1 -5635 761 40 338 282 86 0 chr13 20336 20453 -101852716 + L2 LINE L2 3187 3313 0 368 294 88 23 chr13 20922 21228 -101851941 - L1ME4a LINE L1 -278 5843 5518 22 56 0 0 chr13 21374 21410 -101851759 + AT_rich Low_complexity Low_complexity 1 36 0 277 289 0 0 chr13 24302 24392 -101848777 + L1MC4 LINE L1 6614 6703 -1339 309 317 63 7 chr13 25198 25340 -101847829 - L2 LINE L2 -443 2871 2722 351 0 0 0 chr13 26723 26762 -101846407 + (CA)n Simple_repeat Simple_repeat 2 40 0 5597 137 54 40 chr13 26791 29489 -101843680 - SVA Other Other -518 1384 432 4568 273 37 26 chr13 29502 29627 -101843542 + L1P LINE L1 1738 1860 -4286 2045 142 0 0 chr13 29627 29922 -101843247 - AluSx SINE Alu -17 295 1 4568 273 37 26 chr13 29922 31491 -101841678 + L1P LINE L1 1860 3450 -2696 3237 204 21 3 chr13 31493 32114 -101841055 + MSTB-int LTR MaLR 1020 1651 0 1675 243 16 0 chr13 32114 32485 -101840684 + MSTB LTR MaLR 1 377 -49 2254 218 14 10 chr13 32487 32982 -101840187 + L1 LINE L1 3447 3943 -2203 1721 142 32 4 chr13 32982 33258 -101839911 + AluSx SINE Alu 2 286 -22 219 36 0 0 chr13 33258 33286 -101839883 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 334 183 0 14 chr13 33293 33364 -101839805 + L1 LINE L1 2769 2838 -3308 229 310 17 35 chr13 34137 34311 -101838858 + CT-rich Low_complexity Low_complexity 5 175 0 543 271 55 52 chr13 35546 35929 -101837240 + HSREP522 Satellite telomeric 121 504 0 304 298 166 47 chr13 36971 37206 -101835963 - L1M2 LINE L1 -5605 1244 982 321 322 71 33 chr13 37373 37584 -101835585 - L1MDb LINE L1 -5783 626 408 259 231 122 39 chr13 37601 37757 -101835412 - L1MDb LINE L1 -5787 622 454 745 324 109 30 chr13 37764 38239 -101834930 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr13 38366 38390 -101834779 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 38465 38487 -101834682 + AT_rich Low_complexity Low_complexity 1 22 0 2076 122 0 3 chr13 38763 39057 -101834112 - AluSx SINE Alu -19 293 1 639 241 99 0 chr13 39059 39200 -101833969 - FRAM SINE Alu -21 155 1 328 78 0 112 chr13 39900 40079 -101833090 + (CCCCCA)n Simple_repeat Simple_repeat 2 160 0 1204 139 34 29 chr13 40501 40709 -101832460 + AluJo SINE Alu 6 214 -98 550 314 41 18 chr13 40831 41051 -101832118 - MIR SINE MIR -36 226 2 225 274 113 28 chr13 41353 41459 -101831710 - L2 LINE L2 0 3272 3158 2335 92 0 3 chr13 42136 42439 -101830730 + AluSg SINE Alu 1 302 -8 387 292 30 46 chr13 42442 42582 -101830587 + MIR SINE MIR 28 160 -48 573 246 221 5 chr13 42868 43067 -101830102 + MIR SINE MIR 14 255 -7 270 284 51 60 chr13 43607 43707 -101829462 - MIR3 SINE MIR -30 178 79 214 208 0 21 chr13 44357 44405 -101828764 - MIR SINE MIR -10 252 206 353 286 29 21 chr13 44662 44802 -101828367 + MIR SINE MIR 35 175 -87 520 285 40 7 chr13 45059 45210 -101827959 + MIR3 SINE MIR 19 174 -34 222 226 19 0 chr13 45461 45514 -101827655 + L3b LINE CR1 1335 1388 -195 236 30 30 0 chr13 46187 46220 -101826949 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 692 270 0 27 chr13 46236 46421 -101826748 + MIR SINE MIR 77 256 -6 387 275 33 0 chr13 46429 46549 -101826620 - MIR SINE MIR -55 207 84 2908 155 2 14 chr13 47812 48329 -101824840 + TAR1 Satellite telomeric 1558 2068 -43 470 127 7 72 chr13 48473 48769 -101824400 + (TTAGGG)n Simple_repeat Simple_repeat 1 276 0 8774 201 12 83 chr13 48770 49505 -101823664 - L1 LINE L1 -927 5219 4434 1136 157 0 0 chr13 49505 49683 -101823486 - AluSp SINE Alu 0 313 136 8774 201 12 83 chr13 49683 51926 -101821243 - L1 LINE L1 -1712 4434 2280 424 261 27 9 chr13 52159 52270 -101820899 - MER5B DNA MER1_type -3 175 63 531 31 0 0 chr13 52272 52337 -101820832 + (TC)n Simple_repeat Simple_repeat 2 66 0 258 32 0 0 chr13 52336 52367 -101820802 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1177 244 168 66 chr13 52944 53431 -101819738 + MLT1F LTR MaLR 6 542 0 32 0 0 0 chr13 54710 54742 -101818427 + AT_rich Low_complexity Low_complexity 1 32 0 231 338 203 23 chr13 55161 55294 -101817875 + MIR3 SINE MIR 46 202 -6 189 299 75 47 chr13 55627 55734 -101817435 - L2 LINE L2 -7 3306 3197 23 68 0 0 chr13 56662 56706 -101816463 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 57342 57363 -101815806 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 57837 57862 -101815307 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 207 200 62 113 chr13 58320 58400 -101814769 - L2 LINE L2 0 3272 3197 526 220 55 0 chr13 58650 58759 -101814410 - MIR3 SINE MIR -12 196 82 913 266 22 0 chr13 59324 59546 -101813623 - MIR SINE MIR 0 262 36 182 357 20 31 chr13 60578 60676 -101812493 + L3b LINE CR1 1220 1316 -267 558 89 13 0 chr13 60892 60971 -101812198 + MADE1 DNA Mariner 1 80 0 2128 133 0 9 chr13 61381 61696 -101811473 + AluSx SINE Alu 1 312 0 941 203 17 0 chr13 61696 61873 -101811296 + AluSg/x SINE Alu 132 311 -1 2339 103 0 0 chr13 62258 62559 -101810610 + AluSq SINE Alu 1 301 -12 747 134 84 0 chr13 63745 63924 -101809245 + L1MC2 LINE L1 5224 5424 -743 2006 105 36 0 chr13 63924 64225 -101808944 + L1PA16 LINE L1 5842 6157 -9 4197 189 42 9 chr13 64234 65067 -101808102 + L1MC2 LINE L1 5413 6280 -64 2329 87 7 0 chr13 65067 65366 -101807803 - AluY SINE Alu -10 301 1 4197 189 42 9 chr13 65366 65428 -101807741 + L1MC2 LINE L1 6280 6338 -6 252 0 0 0 chr13 65896 65924 -101807245 + (A)n Simple_repeat Simple_repeat 1 28 0 29 0 0 0 chr13 66249 66278 -101806891 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 66302 66331 -101806838 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 66390 66415 -101806754 + AT_rich Low_complexity Low_complexity 1 25 0 196 359 142 0 chr13 66501 66607 -101806562 - MIR SINE MIR -125 137 17 21 0 0 0 chr13 67669 67690 -101805479 + AT_rich Low_complexity Low_complexity 1 21 0 277 322 30 10 chr13 67803 67913 -101805256 + MIR SINE MIR 38 148 -63 199 93 47 0 chr13 67954 67997 -101805172 + (TA)n Simple_repeat Simple_repeat 2 46 0 204 179 0 0 chr13 68613 68652 -101804517 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 1301 78 0 31 chr13 68949 69140 -101804029 - L1PA8 LINE L1 -1 6171 5987 50 42 0 0 chr13 69231 69302 -101803867 + AT_rich Low_complexity Low_complexity 1 71 0 2227 140 5 27 chr13 70568 70940 -101802229 - THE1B LTR MaLR 0 364 1 445 98 12 12 chr13 71986 72068 -101801101 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1362 219 19 41 chr13 72069 72388 -101800781 - MSTD LTR MaLR -1 395 84 4490 213 74 75 chr13 72392 73125 -101800044 - L1MC3 LINE L1 -743 5403 4671 815 118 0 0 chr13 73125 73264 -101799905 + AluY SINE Alu 172 310 0 4490 213 74 75 chr13 73264 75268 -101797901 - L1MC3 LINE L1 -1475 4671 3530 1078 243 100 27 chr13 75312 75725 -101797444 + MLT2B1 LTR ERVL 1 464 0 1408 285 71 7 chr13 75729 76268 -101796901 + ERVL-B1 LTR ERVL 5 591 -5084 * 4409 186 21 10 chr13 76264 77090 -101796079 + ERVL-B1 LTR ERVL 4695 5529 -235 1822 229 76 19 chr13 77132 77564 -101795605 + MLT2B1 LTR ERVL 1 457 -63 700 14 88 7 chr13 77564 77711 -101795458 + (TA)n Simple_repeat Simple_repeat 2 160 0 351 0 0 0 chr13 77725 77764 -101795405 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1582 161 79 37 chr13 77764 78119 -101795050 - THE1C LTR MaLR -3 372 3 1702 119 15 4 chr13 78121 78389 -101794780 - THE1C-int LTR MaLR 0 1580 1310 3156 107 16 7 chr13 78389 78838 -101794331 + MLT2A2 LTR ERVL 1 453 0 41267 95 11 8 chr13 78838 84471 -101788698 + HERVL-A2 LTR ERVL 1 5654 0 2415 89 3 0 chr13 84471 84784 -101788385 + MLT2A2 LTR ERVL 1 314 -139 216 0 0 0 chr13 84788 84812 -101788357 + (TA)n Simple_repeat Simple_repeat 2 25 0 339 49 0 0 chr13 84813 84854 -101788315 + MLT2A2 LTR ERVL 480 520 0 7775 129 35 53 chr13 84854 86192 -101786977 - THE1C-int LTR MaLR -266 1314 1 1547 173 74 28 chr13 86195 86547 -101786622 - THE1C LTR MaLR -3 372 5 447 277 19 19 chr13 86622 86835 -101786334 - L1MC3 LINE L1 -2659 3487 3275 1188 274 62 32 chr13 87118 87702 -101785467 + HAL1b LINE L1 12 612 -736 305 216 108 29 chr13 87832 87934 -101785235 - MLT1A1 LTR MaLR -236 129 20 24 32 0 0 chr13 88723 88754 -101784415 + AT_rich Low_complexity Low_complexity 1 31 0 401 293 115 6 chr13 89219 89393 -101783776 - MLT1L LTR MaLR -11 604 412 958 233 118 76 chr13 89979 90464 -101782705 - MLT1D LTR MaLR 0 505 1 523 252 16 8 chr13 90481 90604 -101782565 - L2 LINE L2 0 3313 3190 829 251 23 32 chr13 90611 90830 -101782339 - MER58A DNA MER1_type -6 218 2 197 290 9 37 chr13 90840 90947 -101782222 - L2 LINE L2 -125 3188 3085 405 316 108 58 chr13 90957 91337 -101781832 - MLT1J2 LTR MaLR -19 431 33 2131 109 7 0 chr13 91341 91624 -101781545 + AluSx SINE Alu 1 285 -27 347 309 39 34 chr13 91812 92094 -101781075 + MLT1J2 LTR MaLR 84 436 -14 709 259 121 17 chr13 92115 92553 -101780616 - L2 LINE L2 -357 2957 2413 231 189 0 0 chr13 92558 92595 -101780574 - 5S rRNA rRNA -83 38 2 360 194 0 0 chr13 93369 93436 -101779733 - AluJ/FRAM SINE Alu -8 294 228 733 191 0 22 chr13 93437 93573 -101779596 - AluJo/FLAM SINE Alu -179 133 1 2469 188 112 65 chr13 93928 94559 -101778610 - L1MA9 LINE L1 -36 6276 5605 1867 158 7 0 chr13 94559 94850 -101778319 - AluSx SINE Alu -19 293 1 2469 188 112 65 chr13 94850 94942 -101778227 - L1MA9 LINE L1 -707 5605 5519 2039 116 0 3 chr13 95403 95687 -101777482 - AluSq SINE Alu -30 283 1 285 204 0 0 chr13 95813 95857 -101777312 + FAM SINE Alu 63 106 -69 435 87 0 0 chr13 95857 95926 -101777243 + (TG)n Simple_repeat Simple_repeat 2 70 0 2388 70 0 10 chr13 95942 96244 -101776925 + AluY SINE Alu 1 299 -12 4972 190 73 46 chr13 96895 98406 -101774763 + MER52A LTR ERV1 1 1755 0 198 71 0 0 chr13 98986 99014 -101774155 + (TG)n Simple_repeat Simple_repeat 1 28 0 1488 170 123 62 chr13 99563 99904 -101773265 + MLT2D LTR ERVL 5 366 -48 257 235 47 0 chr13 99930 100015 -101773154 - L1MC4 LINE L1 -1340 6702 6614 182 352 32 48 chr13 100825 100950 -101772219 - MER5A DNA MER1_type -37 152 30 590 86 0 0 chr13 101360 101441 -101771728 - MER72 LTR ERV1 0 722 642 1488 208 0 0 chr13 101444 101718 -101771451 - AluJo SINE Alu -9 303 30 196 325 88 6 chr13 103934 104067 -101769102 - MIR SINE MIR -63 145 8 208 158 35 18 chr13 104135 104192 -101768977 + A-rich Low_complexity Low_complexity 2 59 0 2377 142 37 40 chr13 105197 105626 -101767543 - MSTA LTR MaLR 0 428 1 186 118 0 0 chr13 105670 105704 -101767465 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 336 24 0 0 chr13 106492 106533 -101766636 + (CA)n Simple_repeat Simple_repeat 2 42 0 248 172 0 16 chr13 106592 106656 -101766513 + (TG)n Simple_repeat Simple_repeat 2 64 0 210 143 0 0 chr13 108199 108234 -101764935 + (A)n Simple_repeat Simple_repeat 1 35 0 271 43 0 43 chr13 108447 108494 -101764675 + (CAA)n Simple_repeat Simple_repeat 1 45 0 189 147 0 0 chr13 108579 108613 -101764556 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 26 0 0 0 chr13 111031 111057 -101762112 + AT_rich Low_complexity Low_complexity 1 26 0 418 291 95 0 chr13 111177 111325 -101761844 + MIR SINE MIR 84 245 -17 209 271 86 0 chr13 111617 111687 -101761482 + MIR SINE MIR 187 262 0 2234 132 5 27 chr13 111747 112119 -101761050 + THE1B LTR MaLR 1 364 0 2189 104 3 0 chr13 113214 113502 -101759667 - AluSc SINE Alu -16 293 5 1220 329 45 11 chr13 113506 113968 -101759201 - L2 LINE L2 -21 3292 2815 707 244 311 28 chr13 114123 114512 -101758657 - L2 LINE L2 -495 2819 2321 282 341 11 0 chr13 114597 114685 -101758484 - L2 LINE L2 -2 3311 3223 23 0 0 53 chr13 115223 115243 -101757926 + AT_rich Low_complexity Low_complexity 1 20 -16 2002 124 3 20 chr13 115243 115549 -101757620 + AluSq SINE Alu 1 301 -12 23 0 0 53 chr13 115549 115566 -101757603 + AT_rich Low_complexity Low_complexity 20 36 0 26 88 0 0 chr13 116161 116229 -101756940 + AT_rich Low_complexity Low_complexity 1 68 0 31 44 0 0 chr13 116768 116813 -101756356 + AT_rich Low_complexity Low_complexity 1 45 0 219 139 0 0 chr13 117379 117415 -101755754 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 198 66 66 chr13 117782 117873 -101755296 + LTR66 LTR ERVL 344 434 -176 186 43 0 0 chr13 117874 117897 -101755272 + (GA)n Simple_repeat Simple_repeat 2 24 0 985 263 44 68 chr13 118051 118548 -101754621 - MLT1H1 LTR MaLR 0 595 1 687 266 6 0 chr13 118781 118954 -101754215 + FRAM SINE Alu 1 171 -5 36 0 0 0 chr13 120718 120754 -101752415 + AT_rich Low_complexity Low_complexity 1 36 0 219 276 102 31 chr13 120988 121115 -101752054 + L2 LINE L2 3136 3271 -1 1049 201 34 8 chr13 122484 122723 -101750446 + Zaphod DNA AcHobo 3779 4023 -8 5135 159 42 29 chr13 123213 123242 -101749927 - L1MA5 LINE L1 -2 6298 6271 9045 117 5 1 chr13 123242 124524 -101748645 + HSMAR1 DNA Mariner 1 1287 0 5135 159 42 29 chr13 124524 126219 -101746950 - L1MA5 LINE L1 -29 6271 4553 434 335 79 32 chr13 127604 128046 -101745123 + L2 LINE L2 2228 2690 -624 875 255 90 17 chr13 128514 128871 -101744298 - Charlie2 DNA MER1_type -41 2821 2439 2093 98 35 0 chr13 128883 129169 -101744000 + AluSp SINE Alu 1 296 -17 180 0 0 0 chr13 129180 129200 -101743969 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1172 85 0 0 chr13 129207 129360 -101743809 - AluSp SINE Alu -31 282 130 225 259 0 0 chr13 129476 129534 -101743635 - L1MC4 LINE L1 -1326 6716 6659 23 0 0 0 chr13 129730 129753 -101743416 + AT_rich Low_complexity Low_complexity 1 23 0 282 29 0 0 chr13 130205 130240 -101742929 + (TC)n Simple_repeat Simple_repeat 1 35 0 47 73 0 0 chr13 130358 130454 -101742715 + AT_rich Low_complexity Low_complexity 1 96 0 27 49 0 0 chr13 130945 130986 -101742183 + AT_rich Low_complexity Low_complexity 1 41 0 628 294 43 7 chr13 131188 131464 -101741705 - L1ME4a LINE L1 -270 5851 5566 216 67 0 0 chr13 132295 132325 -101740844 + (TG)n Simple_repeat Simple_repeat 1 30 0 26 30 0 0 chr13 133340 133373 -101739796 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 133408 133430 -101739739 + AT_rich Low_complexity Low_complexity 1 22 0 2123 130 0 0 chr13 133435 133728 -101739441 - AluSx SINE Alu -19 293 1 273 242 0 0 chr13 134680 134742 -101738427 + MIR SINE MIR 187 248 -14 21 0 0 0 chr13 134760 134781 -101738388 + AT_rich Low_complexity Low_complexity 1 21 0 617 316 43 8 chr13 135531 135787 -101737382 + LTR16A1 LTR ERVL 173 437 -20 2175 114 3 0 chr13 136000 136297 -101736872 - AluSq SINE Alu -15 298 1 27 49 0 0 chr13 136419 136460 -101736709 + AT_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr13 137447 137480 -101735689 + AT_rich Low_complexity Low_complexity 1 33 0 1726 129 7 41 chr13 137681 137975 -101735194 + AluSx SINE Alu 11 294 -18 3183 69 7 0 chr13 138363 138797 -101734372 + L1PA8 LINE L1 5734 6170 -2 1724 106 4 0 chr13 138797 139033 -101734136 + AluSx SINE Alu 60 296 -16 240 35 0 0 chr13 139577 139606 -101733563 + (TG)n Simple_repeat Simple_repeat 2 30 0 2342 57 0 0 chr13 140416 140744 -101732425 - AluY SINE Alu 0 328 1 286 325 94 49 chr13 141861 142064 -101731105 + MIR SINE MIR 48 259 -3 327 258 0 86 chr13 142329 142457 -101730712 - MER5B DNA MER1_type -43 135 19 1823 196 52 28 chr13 142574 142961 -101730208 + MSTD LTR MaLR 1 396 0 207 139 0 0 chr13 143082 143118 -101730051 + (CAA)n Simple_repeat Simple_repeat 2 37 0 336 48 0 0 chr13 143714 143756 -101729413 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 89 0 0 chr13 144238 144294 -101728875 + AT_rich Low_complexity Low_complexity 1 56 0 4199 184 11 25 chr13 144837 145044 -101728125 + L1MA8 LINE L1 5114 5322 -969 1932 149 10 0 chr13 145044 145340 -101727829 + AluSq SINE Alu 1 299 -14 4199 184 11 25 chr13 145340 146152 -101727017 + L1MA8 LINE L1 5322 6119 -172 289 218 108 18 chr13 146183 146361 -101726808 - L1M4 LINE L1 -312 5866 5677 2411 74 0 0 chr13 146368 146664 -101726505 + AluY SINE Alu 1 296 -15 513 301 57 66 chr13 146665 147000 -101726169 + MLT1H1 LTR MaLR 20 351 -204 7131 191 6 39 chr13 147022 147476 -101725693 + L1P LINE L1 3409 3876 -2270 2049 130 3 3 chr13 147476 147783 -101725386 + AluSc SINE Alu 1 307 -2 7131 191 6 39 chr13 147783 148266 -101724903 + L1P LINE L1 3876 4373 -1773 1684 191 3 0 chr13 148266 148559 -101724610 + AluJb SINE Alu 1 294 -18 7131 191 6 39 chr13 148559 149183 -101723986 + L1P LINE L1 4373 4920 -1226 3430 72 13 4 chr13 149185 149658 -101723511 - MER11A LTR ERVK 0 1266 790 191 258 75 118 chr13 150110 150203 -101722966 + L3 LINE CR1 1439 1527 -50 2388 75 0 0 chr13 150298 150592 -101722577 + AluY SINE Alu 1 294 -17 223 269 166 28 chr13 150774 150919 -101722250 - MIR SINE MIR -47 215 51 221 209 136 64 chr13 151845 151955 -101721214 + MIR SINE MIR 89 206 -56 2288 195 45 10 chr13 152414 152906 -101720263 + LTR22 LTR ERVK 1 509 0 2441 60 0 3 chr13 152978 153278 -101719891 - AluY SINE Alu -11 300 2 1874 285 92 69 chr13 153676 154824 -101718345 + L1MCc LINE L1 19 1192 -5231 825 248 30 52 chr13 154825 154990 -101718179 + L1MCc LINE L1 2861 3028 -3913 2557 52 0 0 chr13 154990 155296 -101717873 + AluY SINE Alu 1 306 -5 825 248 30 52 chr13 155296 155612 -101717557 + L1MCc LINE L1 3028 3292 -3649 1721 232 37 34 chr13 155613 155825 -101717344 - L1M4 LINE L1 -774 5372 5162 2195 128 0 10 chr13 155825 156138 -101717031 + AluSx SINE Alu 1 310 -2 1844 118 17 37 chr13 156143 156439 -101716730 + AluSc SINE Alu 6 295 -14 1721 232 37 34 chr13 156439 156788 -101716381 - L1M4 LINE L1 -987 5159 4803 2451 219 48 76 chr13 156790 157580 -101715589 + L1MB1 LINE L1 5401 6168 0 2207 108 15 6 chr13 157642 157984 -101715185 + L1PB1 LINE L1 5804 6148 -3 23 0 0 0 chr13 157984 158007 -101715162 + AT_rich Low_complexity Low_complexity 1 23 0 863 125 0 0 chr13 158441 158569 -101714600 + AluSg/x SINE Alu 178 305 -5 1925 121 7 11 chr13 158594 158875 -101714294 + AluSx SINE Alu 1 280 -32 33 80 0 0 chr13 159964 160039 -101713130 + AT_rich Low_complexity Low_complexity 1 75 0 321 26 0 0 chr13 161487 161525 -101711644 + (CA)n Simple_repeat Simple_repeat 1 38 0 2035 128 0 0 chr13 163022 163443 -101709726 - AluSq SINE Alu 0 423 3 1136 258 31 123 chr13 163449 164003 -101709166 - MLT1E2 LTR MaLR -2 503 1 2090 103 0 7 chr13 164051 164353 -101708816 - AluY SINE Alu 0 300 1 378 269 123 15 chr13 165356 165624 -101707545 + HAL1 LINE L1 971 1267 -1240 * 812 305 79 16 chr13 165614 166182 -101706987 + HAL1 LINE L1 1036 1639 -868 755 230 8 60 chr13 166183 166418 -101706751 + HAL1 LINE L1 1531 1753 -754 227 312 8 56 chr13 166470 166595 -101706574 - L2 LINE L2 0 3313 3195 317 307 144 23 chr13 166643 166858 -101706311 + HAL1 LINE L1 2267 2507 0 203 169 0 85 chr13 166911 166970 -101706199 + GA-rich Low_complexity Low_complexity 1 54 0 319 146 0 36 chr13 167151 167206 -101705963 - MER39 LTR ERV1 0 707 655 407 319 145 0 chr13 167660 167826 -101705343 - MIR SINE MIR -34 228 39 591 367 129 23 chr13 167965 168737 -101704432 - L3 LINE CR1 -101 1476 623 30 0 0 0 chr13 168945 168975 -101704194 + AT_rich Low_complexity Low_complexity 1 30 0 231 337 127 17 chr13 168982 169163 -101704006 - L3 LINE CR1 -1050 527 327 230 0 33 0 chr13 169356 169386 -101703783 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2320 38 0 0 chr13 169400 169663 -101703506 - AluY SINE Alu -48 263 1 914 274 164 34 chr13 169796 170713 -101702456 + HAL1b LINE L1 208 1243 -105 2052 176 36 28 chr13 170716 171261 -101701908 - MLT2A2 LTR ERVL -3 551 1 554 331 60 40 chr13 171481 171880 -101701289 + LTR33 LTR ERVL 1 407 -114 1920 161 0 0 chr13 173959 174258 -101698911 - AluSx SINE Alu -13 299 1 1957 129 16 19 chr13 174613 174924 -101698245 + AluY SINE Alu 1 310 -1 306 263 110 25 chr13 175332 175450 -101697719 + MER67B LTR ERV1 32 159 -502 3854 154 82 11 chr13 175450 176144 -101697025 + LTR1B LTR ERV1 1 743 -83 474 190 111 0 chr13 176143 176266 -101696903 - MER67B LTR ERV1 -358 277 60 648 115 19 19 chr13 176266 176370 -101696799 - LTR1B LTR ERV1 0 826 723 1335 77 0 0 chr13 176370 176540 -101696629 + AluY SINE Alu 136 305 -6 10435 214 33 51 chr13 176540 180489 -101692680 + L1MC3 LINE L1 2405 6423 -1572 2368 103 20 8 chr13 180489 180840 -101692329 - THE1A LTR MaLR 0 355 1 10636 94 9 55 chr13 180840 182492 -101690677 - THE1A-int LTR MaLR 0 1580 4 329 50 0 0 chr13 182492 182532 -101690637 - THE1A LTR MaLR -315 40 1 10435 214 33 51 chr13 182532 182820 -101690349 + L1MC3 LINE L1 6420 7969 -26 2229 145 36 3 chr13 182889 183054 -101690115 - L1M1 LINE L1 -527 5773 5615 2052 134 0 0 chr13 183054 183337 -101689832 - AluSx SINE Alu -9 303 21 399 41 0 0 chr13 183339 183388 -101689781 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2229 145 36 3 chr13 183388 183611 -101689558 - L1M1 LINE L1 -685 5615 5369 2191 144 126 5 chr13 183610 184053 -101689116 + L1MA4 LINE L1 5801 6297 -3 * 183 42 0 0 chr13 185402 185426 -101687743 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1890 154 0 24 chr13 185429 185727 -101687442 - AluSx SINE Alu -21 291 1 791 244 72 9 chr13 185968 186189 -101686980 + MER46A DNA MER2_type 1 235 -1 550 252 47 65 chr13 186302 186516 -101686653 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 186516 186565 -101686604 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 186577 186598 -101686571 + AT_rich Low_complexity Low_complexity 1 21 0 2031 126 0 3 chr13 186689 186975 -101686194 + AluSq SINE Alu 1 285 -28 1134 258 14 14 chr13 187550 187911 -101685258 + L1 LINE L1 3373 3733 -2413 837 179 103 26 chr13 187907 188141 -101685028 + L1 LINE L1 4358 4609 -1537 * 1039 228 57 25 chr13 188302 188898 -101684271 + L1M4c LINE L1 2113 2729 -3653 593 219 103 0 chr13 188953 189108 -101684061 + L1M4c LINE L1 3764 3934 -2448 6010 233 17 14 chr13 189123 190605 -101682564 + L1PA15-16 LINE L1 5 1257 -5592 1199 100 11 17 chr13 190606 190786 -101682383 - THE1B LTR MaLR 0 364 186 496 182 0 0 chr13 190933 191005 -101682164 - MER58A DNA MER1_type -1 223 152 496 250 0 9 chr13 191005 191121 -101682048 - MER58A DNA MER1_type 0 115 1 367 333 57 13 chr13 191258 191417 -101681752 + L2 LINE L2 2819 2984 -329 2664 182 96 33 chr13 191651 192316 -101680853 - MER39 LTR ERV1 0 707 1 262 209 22 143 chr13 193129 193220 -101679949 - MER77 LTR ERV1 -515 90 11 225 152 22 0 chr13 193230 193276 -101679893 + HAL1 LINE L1 2327 2373 -134 3705 243 48 34 chr13 193786 195187 -101677982 + L1M4 LINE L1 3371 4791 -1355 308 24 24 0 chr13 195188 195229 -101677940 + (TA)n Simple_repeat Simple_repeat 1 42 0 250 368 40 8 chr13 195579 195704 -101677465 + L2 LINE L2 3142 3270 -2 649 163 12 17 chr13 195773 195945 -101677224 + GA-rich Low_complexity Low_complexity 3 173 0 2462 159 20 0 chr13 196052 196449 -101676720 + MSTA-int LTR MaLR 1247 1651 0 2062 145 89 8 chr13 196474 196846 -101676323 + MSTA LTR MaLR 27 428 0 791 244 72 9 chr13 197188 197409 -101675760 + MER46A DNA MER2_type 1 235 -1 550 252 47 65 chr13 197522 197736 -101675433 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 197736 197785 -101675384 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 197797 197818 -101675351 + AT_rich Low_complexity Low_complexity 1 21 0 1626 189 0 3 chr13 197909 198195 -101674974 + AluSq SINE Alu 1 285 -28 627 261 56 20 chr13 198770 199111 -101674058 + L1MB4 LINE L1 3373 3725 -2421 9728 119 31 44 chr13 199307 200893 -101672276 - THE1C-int LTR MaLR -14 1566 1 1547 173 74 28 chr13 200896 201248 -101671921 - THE1C LTR MaLR -3 372 5 447 277 19 19 chr13 201323 201536 -101671633 - L1M4 LINE L1 -2659 3487 3275 22 0 0 0 chr13 201861 201883 -101671286 + AT_rich Low_complexity Low_complexity 1 22 0 2773 242 75 11 chr13 201909 202235 -101670934 + L1MB4 LINE L1 4981 5285 -895 1982 125 0 4 chr13 202235 202516 -101670653 + AluSq SINE Alu 3 282 -31 2773 242 75 11 chr13 202516 203160 -101670009 + L1MB4 LINE L1 5285 6000 -180 612 232 60 12 chr13 203172 203340 -101669829 + L1M4 LINE L1 4690 4865 -1281 442 268 54 12 chr13 203360 203528 -101669641 + L1MB4 LINE L1 6006 6180 0 701 229 79 31 chr13 203641 204083 -101669086 + L1M4 LINE L1 2131 3169 -2977 225 0 0 0 chr13 205184 205209 -101667960 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2497 187 55 6 chr13 205364 205856 -101667313 - MLT2B1 LTR ERVL -4 516 1 22 35 0 0 chr13 206472 206501 -101666668 + AT_rich Low_complexity Low_complexity 1 29 0 2354 67 0 13 chr13 206664 206962 -101666207 + AluY SINE Alu 1 294 -17 1140 282 96 14 chr13 207036 207451 -101665718 + LTR16A LTR ERVL 1 449 -1 268 297 22 72 chr13 207451 207589 -101665580 + MER94 DNA DNA 4 134 0 376 313 48 24 chr13 207611 207777 -101665392 + MIR SINE MIR 63 232 -30 366 274 61 17 chr13 207773 207902 -101665267 - MIR SINE MIR -63 145 37 * 656 302 32 29 chr13 208010 208288 -101664881 - MLT1K LTR MaLR -10 578 300 845 300 91 3 chr13 208383 208703 -101664466 + L2 LINE L2 1321 1668 -1646 238 255 89 76 chr13 209466 209623 -101663546 - MIR SINE MIR -44 218 60 309 320 0 19 chr13 209697 209800 -101663369 + MLT1F LTR MaLR 18 118 -424 247 280 119 63 chr13 209854 209997 -101663172 + MLT1F1 LTR MaLR 229 379 -211 * 278 312 151 29 chr13 209972 210177 -101662992 + MLT1F1 LTR MaLR 330 559 -8 257 320 24 32 chr13 210309 210434 -101662735 + MIR SINE MIR 29 152 -110 21 89 0 0 chr13 210491 210547 -101662622 + AT_rich Low_complexity Low_complexity 1 56 0 305 319 34 8 chr13 210631 210750 -101662419 - L2 LINE L2 0 3313 3192 494 289 7 0 chr13 211788 211937 -101661232 + L1M4 LINE L1 2 151 -6391 195 313 15 30 chr13 212321 212388 -101660781 - MIR SINE MIR -15 247 182 2372 73 0 10 chr13 212668 212968 -101660201 - AluY SINE Alu -14 297 1 310 303 113 21 chr13 213393 213631 -101659538 - MIR SINE MIR 0 262 3 243 0 0 0 chr13 214649 214676 -101658493 + (A)n Simple_repeat Simple_repeat 1 27 0 24 53 0 0 chr13 265016 265054 -101608115 + AT_rich Low_complexity Low_complexity 1 38 0 1031 136 22 33 chr13 266650 266834 -101606335 - MER49 LTR ERV1 -27 896 715 390 230 70 0 chr13 267984 268084 -101605085 - MER5A DNA MER1_type -81 108 2 1798 142 26 33 chr13 269781 270084 -101603085 - AluSx SINE Alu -9 303 3 835 174 128 78 chr13 270126 270345 -101602824 - MER46A DNA MER2_type 0 236 7 188 209 0 0 chr13 271531 271574 -101601595 + MIR SINE MIR 99 141 -67 997 166 6 6 chr13 273184 273347 -101599822 - AluSx SINE Alu -149 163 1 21 36 0 0 chr13 273642 273670 -101599499 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 274823 274867 -101598302 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 275246 275267 -101597902 + AT_rich Low_complexity Low_complexity 1 21 0 208 313 0 0 chr13 275783 275831 -101597338 - L2 LINE L2 -15 3257 3210 507 123 0 0 chr13 275870 275943 -101597226 + MADE1 DNA Mariner 3 75 -5 823 219 101 6 chr13 276879 277048 -101596121 - MER5A DNA MER1_type -4 185 1 226 200 100 78 chr13 277906 277996 -101595173 + MARNA DNA Mariner 15 106 -480 1432 222 134 43 chr13 278338 279039 -101594130 + LTR1B LTR ERV1 137 826 0 431 257 9 0 chr13 279295 279408 -101593761 - LTR43 LTR ERV1 -306 296 183 1999 98 8 4 chr13 279999 280264 -101592905 - AluSq SINE Alu -1 312 47 1807 180 53 6 chr13 280644 280983 -101592186 - MLT1A1 LTR MaLR 0 365 11 1241 133 5 27 chr13 281101 281289 -101591880 - AluSg/x SINE Alu -20 292 109 1930 215 81 26 chr13 282134 282627 -101590542 + L1MB8 LINE L1 5653 6172 -6 366 318 54 7 chr13 283699 283847 -101589322 + L2 LINE L2 2730 2884 -430 24 32 0 0 chr13 284169 284200 -101588969 + AT_rich Low_complexity Low_complexity 1 31 0 969 234 48 18 chr13 284557 284701 -101588468 - L1MB7 LINE L1 0 6184 6041 345 239 27 82 chr13 284701 284885 -101588284 - L1MD3 LINE L1 -1960 6035 5862 3758 76 46 32 chr13 285359 285884 -101587285 - SVA Other Other -5 1381 850 744 239 198 25 chr13 286011 286254 -101586915 - THE1-int LTR MaLR -389 1191 907 842 231 82 12 chr13 286269 286524 -101586645 + MSTA LTR MaLR 95 367 -61 483 183 148 49 chr13 286567 286709 -101586460 - MST-int LTR MaLR -990 661 506 * 4918 232 56 52 chr13 286706 288210 -101584959 + MSTA-int LTR MaLR 28 1537 -114 5246 238 61 35 chr13 288310 289801 -101583368 - MSTA-int LTR MaLR -96 1555 26 458 227 167 8 chr13 289797 289929 -101583240 + MST-int LTR MaLR 507 659 -992 * 1012 235 56 8 chr13 289965 290233 -101582936 - MSTA LTR MaLR -52 376 96 399 232 11 11 chr13 290253 290348 -101582821 + THE1-int LTR MaLR 907 1001 -579 598 164 0 4 chr13 291147 291315 -101581854 + HSAT5 Satellite Satellite 1 167 -3 305 182 34 57 chr13 291535 291623 -101581546 + HSAT5 Satellite Satellite 1 86 0 334 218 12 6 chr13 291854 291960 -101581209 + HSAT5 Satellite Satellite 1 106 -7 * 472 272 26 9 chr13 291944 292096 -101581073 - MSTA LTR MaLR -141 285 133 738 242 189 20 chr13 292143 292387 -101580782 + THE1-int LTR MaLR 907 1191 -389 * 3267 306 41 21 chr13 292375 293358 -101579811 - MSTA-int LTR MaLR -616 1035 34 332 244 170 7 chr13 293358 293493 -101579676 + MST-int LTR MaLR 503 659 -992 947 267 49 8 chr13 293531 293797 -101579372 - MSTA LTR MaLR -54 374 98 686 242 186 22 chr13 293824 294055 -101579114 + THE1-int LTR MaLR 907 1175 -405 231 236 18 0 chr13 294057 294112 -101579057 - THE1-int LTR MaLR -614 966 911 555 135 21 10 chr13 294197 294293 -101578876 - MSTA LTR MaLR -331 97 1 1434 196 6 44 chr13 294293 294634 -101578535 - MSTA-int LTR MaLR 0 1651 1324 277 214 114 0 chr13 294634 294704 -101578465 - MSTA LTR MaLR -248 180 103 701 186 0 70 chr13 294822 294994 -101578175 - MSTA-int LTR MaLR -174 1477 1318 309 226 32 0 chr13 295001 295063 -101578106 - MSTA LTR MaLR -269 159 96 469 214 20 0 chr13 295139 295237 -101577932 - MSTA LTR MaLR -328 100 1 5987 222 53 38 chr13 295237 296831 -101576338 - MSTA-int LTR MaLR 0 1651 34 646 238 191 26 chr13 297072 297303 -101575866 - MSTA-int LTR MaLR -405 1175 907 1073 231 56 7 chr13 297325 297594 -101575575 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 297611 297765 -101575404 - MSTA-int LTR MaLR -963 617 463 * 5556 217 53 47 chr13 297760 299306 -101573863 + MSTA-int LTR MaLR 28 1583 -68 343 159 0 48 chr13 299378 299441 -101573728 - MSTA LTR MaLR -52 376 317 388 158 26 0 chr13 299443 299519 -101573650 + MSTA-int LTR MaLR 1574 1651 0 365 263 10 0 chr13 299519 299618 -101573551 + MSTA LTR MaLR 1 100 -328 1849 222 56 15 chr13 299861 300762 -101572407 - L1M4 LINE L1 -464 5714 4771 697 321 77 10 chr13 302104 302483 -101570686 - MLT1G1 LTR MaLR -34 561 79 1255 183 73 0 chr13 302520 302794 -101570375 - L1MA5 LINE L1 -6 6294 6001 1017 236 31 12 chr13 302861 303120 -101570049 - AluJo SINE Alu -48 264 1 3067 212 32 15 chr13 303121 304079 -101569090 - L1MA5 LINE L1 -354 5946 4969 24 0 0 0 chr13 304510 304534 -101568635 + AT_rich Low_complexity Low_complexity 1 24 0 372 267 0 0 chr13 305640 305741 -101567428 - L1MA9 LINE L1 -49 6263 6163 425 171 0 0 chr13 306682 306758 -101566411 - AluS SINE Alu -12 298 223 1801 114 35 4 chr13 306858 307112 -101566057 - AluSg SINE Alu -48 262 1 21 36 0 0 chr13 307167 307195 -101565974 + AT_rich Low_complexity Low_complexity 1 28 0 881 160 0 0 chr13 307195 307320 -101565849 - FLAM_C SINE Alu -18 125 1 306 366 0 7 chr13 307902 308044 -101565125 - HERV16 LTR ERVL -4335 661 521 2218 105 3 7 chr13 308104 308408 -101564761 - AluSp SINE Alu 0 313 11 1587 184 153 22 chr13 308660 309073 -101564096 - MLT1C LTR MaLR 0 467 1 572 257 161 8 chr13 309257 309506 -101563663 - LTR16A1 LTR ERVL -3 454 168 228 258 30 0 chr13 310496 310562 -101562607 - MIR SINE MIR -131 131 64 21 0 0 0 chr13 310562 310583 -101562586 + AT_rich Low_complexity Low_complexity 1 21 0 200 236 32 38 chr13 311869 312026 -101561143 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 4583 194 31 28 chr13 312875 313763 -101559406 - MER54A LTR ERVL -1 900 10 722 164 0 0 chr13 314594 314710 -101558459 + AluJb SINE Alu 2 117 -195 1512 314 77 33 chr13 315098 316202 -101556967 + L2 LINE L2 2157 3305 -8 2208 113 0 3 chr13 316347 316640 -101556529 + AluSg SINE Alu 1 292 -18 7274 58 7 0 chr13 317062 318753 -101554416 - L1PA6 LINE L1 -5 6149 4451 3987 120 43 52 chr13 318880 319802 -101553367 - MER11A LTR ERVK -326 910 1 28805 114 17 11 chr13 319803 324103 -101549066 - L1P LINE L1 -1809 4337 13 1596 231 47 42 chr13 324218 324812 -101548357 + L1M4 LINE L1 4629 5225 -921 1241 125 11 0 chr13 324812 324996 -101548173 + AluSg/x SINE Alu 117 302 -10 419 233 35 0 chr13 325080 325252 -101547917 + (TA)n Simple_repeat Simple_repeat 2 179 0 2059 134 10 3 chr13 326895 327201 -101545968 - AluJb SINE Alu -1 311 4 363 235 0 69 chr13 327507 327609 -101545560 + L2 LINE L2 3173 3267 -46 2185 119 0 0 chr13 327645 327948 -101545221 + AluSx SINE Alu 1 303 -9 263 240 80 0 chr13 327978 328053 -101545116 - MIR SINE MIR -70 192 112 189 0 0 0 chr13 328087 328108 -101545061 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1679 169 34 7 chr13 328195 328490 -101544679 + AluJb SINE Alu 1 303 -9 2162 114 0 3 chr13 328802 329101 -101544068 - AluSp SINE Alu -15 298 1 245 27 54 0 chr13 329104 329141 -101544028 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 286 128 85 0 chr13 329144 329191 -101543978 - AluJ/FRAM SINE Alu -23 279 229 28 79 0 0 chr13 331296 331359 -101541810 + AT_rich Low_complexity Low_complexity 1 63 0 389 20 20 0 chr13 331536 331586 -101541583 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 963 74 8 8 chr13 331586 331702 -101541467 - AluY SINE Alu -195 116 1 317 286 63 17 chr13 335805 335980 -101537189 - HERV16 LTR ERVL -2033 2963 2781 492 196 21 0 chr13 337568 337665 -101535504 - MSTA LTR MaLR -329 99 1 4380 232 76 26 chr13 337665 338831 -101534338 - MSTA-int LTR MaLR 0 1651 427 742 235 8 10 chr13 338829 339033 -101534136 - MSTA-int LTR MaLR -1270 101 28 * 606 173 156 10 chr13 339029 339180 -101533989 + MSTA-int LTR MaLR 466 661 -963 * 851 246 52 48 chr13 339188 339497 -101533672 - MSTA LTR MaLR -43 385 76 388 241 12 0 chr13 339501 339584 -101533585 + MSTA-int LTR MaLR 907 990 -590 2056 135 3 0 chr13 339942 340230 -101532939 - AluSc SINE Alu -20 289 1 21 0 0 0 chr13 340591 340612 -101532557 + AT_rich Low_complexity Low_complexity 1 21 0 227 247 25 49 chr13 341236 341317 -101531852 + L2 LINE L2 2967 3045 -227 1192 214 231 18 chr13 342175 342633 -101530536 - L1MC4 LINE L1 -668 7374 6819 270 226 37 48 chr13 343235 343379 -101529790 - HSAT5 Satellite Satellite 0 142 1 273 238 12 18 chr13 343647 343743 -101529426 - HSAT5 Satellite Satellite 0 95 1 265 258 0 15 chr13 344155 344221 -101528948 + (CA)n Simple_repeat Simple_repeat 2 66 0 2087 108 87 44 chr13 344448 344884 -101528285 - SN5 Other centromeric 0 455 1 1084 242 4 8 chr13 345404 345668 -101527501 + MSTA-int LTR MaLR 1389 1651 0 545 146 21 10 chr13 345668 345764 -101527405 + MSTA LTR MaLR 1 97 -331 282 214 18 0 chr13 345849 345905 -101527264 + THE1-int LTR MaLR 911 967 -613 * 700 247 169 50 chr13 345858 346137 -101527032 - THE1-int LTR MaLR -362 1218 907 969 221 62 28 chr13 346141 346430 -101526739 + MSTA LTR MaLR 76 374 -54 317 255 152 9 chr13 346448 346603 -101526566 - MST-int LTR MaLR -963 661 462 6001 233 52 22 chr13 346603 348173 -101524996 + MSTA-int LTR MaLR 34 1651 0 396 221 11 0 chr13 348175 348270 -101524899 + MSTA LTR MaLR 5 100 -328 460 167 23 5 chr13 348426 348530 -101524639 - MSTA LTR MaLR -262 113 3 1251 192 25 47 chr13 348532 348850 -101524319 - MSTA-int LTR MaLR 0 1651 1341 250 236 0 28 chr13 349005 349077 -101524092 - MSTA LTR MaLR -331 97 28 517 168 21 0 chr13 349237 349332 -101523837 - MSTA LTR MaLR -331 97 1 1376 219 3 40 chr13 349332 349679 -101523490 - MSTA-int LTR MaLR 0 1651 1318 279 256 24 37 chr13 349686 349768 -101523401 - MSTA LTR MaLR -273 155 75 431 235 20 0 chr13 349820 349918 -101523251 - MSTA LTR MaLR -328 100 1 5749 224 55 39 chr13 349918 351510 -101521659 - MSTA-int LTR MaLR 0 1651 34 268 294 37 9 chr13 351514 351623 -101521546 + THE1-int LTR MaLR 466 577 -1003 1018 229 67 7 chr13 351665 351949 -101521220 - MSTA LTR MaLR -52 376 76 747 179 191 56 chr13 351953 352204 -101520965 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 352192 352248 -101520921 - THE1-int LTR MaLR -613 967 911 * 3871 96 27 4 chr13 352319 352869 -101520300 + LTR6A LTR ERV1 1 563 -1 419 200 21 0 chr13 352900 352995 -101520174 - MSTA LTR MaLR -331 97 1 1280 198 43 49 chr13 352995 353324 -101519845 - MSTA-int LTR MaLR 0 1651 1325 300 248 124 9 chr13 353324 353429 -101519740 - MSTA LTR MaLR -252 176 60 425 247 21 0 chr13 353478 353575 -101519594 - MSTA LTR MaLR -329 99 1 6034 231 65 19 chr13 353575 355125 -101518044 - MSTA-int LTR MaLR 0 1651 28 593 180 156 10 chr13 355121 355272 -101517897 + MST-int LTR MaLR 466 661 -963 * 752 257 49 53 chr13 355280 355564 -101517605 - MSTA LTR MaLR -43 385 103 553 252 208 22 chr13 355705 355931 -101517238 - THE1-int LTR MaLR -406 1174 907 960 247 52 11 chr13 355949 356220 -101516949 + MSTA LTR MaLR 95 376 -52 476 207 164 14 chr13 356248 356388 -101516781 - MST-int LTR MaLR -984 667 507 4628 244 68 25 chr13 356390 357692 -101515477 + MSTA-int LTR MaLR 32 1389 -262 505 216 9 0 chr13 357688 357804 -101515365 + MSTA-int LTR MaLR 1535 1651 0 * 426 189 135 90 chr13 357804 357915 -101515254 + MSTA LTR MaLR 1 116 -248 1970 103 11 0 chr13 357944 358215 -101514954 + LTR6A LTR ERV1 136 409 -155 380 250 50 25 chr13 358315 358435 -101514734 - MSTA LTR MaLR -230 198 76 461 235 30 24 chr13 358439 358672 -101514497 + THE1-int LTR MaLR 907 1187 -393 510 156 21 10 chr13 358805 358901 -101514268 - MSTA LTR MaLR -331 97 1 1383 220 3 41 chr13 358901 359242 -101513927 - MSTA-int LTR MaLR 0 1651 1324 347 213 148 9 chr13 359242 359350 -101513819 - MSTA LTR MaLR -248 180 58 394 253 10 0 chr13 359395 359494 -101513675 - MSTA LTR MaLR -328 100 1 352 160 40 0 chr13 359494 359569 -101513600 - MSTA-int LTR MaLR 0 1651 1574 341 159 0 48 chr13 359571 359634 -101513535 + MSTA LTR MaLR 317 376 -52 258 128 0 0 chr13 359668 359707 -101513462 - MSTA-int LTR MaLR -990 661 623 5551 224 48 48 chr13 359707 361263 -101511906 - MSTA-int LTR MaLR -68 1583 28 508 237 33 26 chr13 361258 361410 -101511759 + THE1-int LTR MaLR 463 615 -965 * 1045 247 56 4 chr13 361429 361696 -101511473 - MSTA LTR MaLR -52 376 96 686 225 191 26 chr13 361720 361951 -101511218 + THE1-int LTR MaLR 907 1175 -405 251 164 36 18 chr13 361953 362008 -101511161 - THE1-int LTR MaLR -614 966 911 242 293 84 42 chr13 364945 365141 -101508028 + MIR3 SINE MIR 4 208 -54 1068 270 22 3 chr13 365477 365799 -101507370 + LTR16C LTR ERVL 135 462 -29 369 345 7 0 chr13 365901 366040 -101507129 - MIR SINE MIR -100 162 23 443 330 133 0 chr13 366184 366402 -101506767 - MIR SINE MIR -1 261 15 378 330 112 8 chr13 367803 368070 -101505099 + L2 LINE L2 2995 3289 -24 1633 196 181 8 chr13 368112 368504 -101504665 + LTR46 LTR ERV1 1 460 0 299 299 140 0 chr13 368505 368612 -101504557 - MIR3 SINE MIR -51 157 36 685 281 57 69 chr13 369020 369457 -101503712 + MLT1K LTR MaLR 76 586 -2 551 153 276 0 chr13 369701 369799 -101503370 - FLAM_C SINE Alu -17 126 2 255 79 0 0 chr13 369866 369904 -101503265 + (TG)n Simple_repeat Simple_repeat 1 38 0 232 309 0 24 chr13 369917 370001 -101503168 + MIR SINE MIR 161 242 -20 200 216 162 0 chr13 370009 370083 -101503086 - L3 LINE CR1 -1430 147 62 21 89 0 0 chr13 370396 370452 -101502717 + AT_rich Low_complexity Low_complexity 1 56 0 1383 191 52 42 chr13 370861 371149 -101502020 + AluJo SINE Alu 1 291 -11 24 53 0 0 chr13 371149 371187 -101501982 + AT_rich Low_complexity Low_complexity 1 38 0 3436 134 20 2 chr13 372879 373387 -101499782 - L1PB1 LINE L1 -4 6147 5631 234 0 0 0 chr13 374283 374309 -101498860 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 191 0 0 chr13 374309 374435 -101498734 + AluSg/x SINE Alu 135 260 -50 216 0 0 0 chr13 374435 374459 -101498710 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr13 374478 374762 -101498407 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 374849 374961 -101498208 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1764 191 23 22 chr13 374962 375336 -101497833 - MLT2C1 LTR ERVL -20 444 1 301 330 71 9 chr13 376520 376632 -101496537 + L2 LINE L2 3151 3269 -3 453 241 54 30 chr13 377203 377369 -101495800 + L1ME4a LINE L1 5950 6119 -2 2011 132 0 14 chr13 377370 377686 -101495483 - AluSx SINE Alu 0 312 1 1992 135 10 0 chr13 378465 378753 -101494416 + AluSg SINE Alu 1 291 -19 8891 114 31 22 chr13 378789 379578 -101493591 - HSMAR1 DNA Mariner 0 1287 481 2138 128 0 0 chr13 379578 379875 -101493294 + AluSx SINE Alu 1 297 -15 8891 114 31 22 chr13 379875 380361 -101492808 - HSMAR1 DNA Mariner -806 481 1 28 61 0 0 chr13 380495 380544 -101492625 + AT_rich Low_complexity Low_complexity 1 49 0 2387 97 0 3 chr13 380596 380906 -101492263 - AluSc SINE Alu 0 309 1 1563 156 52 0 chr13 380961 381262 -101491907 - AluSx SINE Alu 0 315 1 860 211 12 0 chr13 381488 381676 -101491493 - AluSg/x SINE Alu 0 303 114 968 150 36 74 chr13 381809 381923 -101491246 - L1PA16 LINE L1 0 6154 6037 1629 187 3 0 chr13 381923 382217 -101490952 - AluJb SINE Alu -13 299 5 968 150 36 74 chr13 382217 382397 -101490772 - L1PA16 LINE L1 -117 6037 5806 758 143 59 0 chr13 382769 382888 -101490281 - AluJb SINE Alu -185 127 2 745 125 29 0 chr13 383130 383234 -101489935 - U6 snRNA snRNA 0 107 1 4844 213 57 29 chr13 383264 384491 -101488678 - Charlie1a DNA MER1_type -193 1262 1 391 272 32 38 chr13 384790 384948 -101488221 - HERV16 LTR ERVL -4479 517 361 239 54 27 0 chr13 385098 385135 -101488034 + (TA)n Simple_repeat Simple_repeat 2 39 0 630 303 56 8 chr13 385324 385558 -101487611 - LTR16C LTR ERVL -8 483 239 568 276 129 42 chr13 385868 386545 -101486624 + L1ME LINE L1 4955 5704 -460 559 274 88 0 chr13 386603 386812 -101486357 + MIR SINE MIR 28 255 -7 266 241 0 76 chr13 386934 387013 -101486156 + MIR SINE MIR 153 225 -37 855 114 8 0 chr13 387111 387242 -101485927 + L1P4 LINE L1 5317 5448 -715 402 255 84 60 chr13 387257 388046 -101485123 + HSREP522 Satellite telomeric 1 807 -123 204 182 15 61 chr13 388451 388517 -101484652 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 205 177 30 79 chr13 389850 390301 -101482868 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 302 191 48 34 chr13 389913 389925 -101483244 + (TA)n Simple_repeat Simple_repeat 2 12 -138 2032 125 3 0 chr13 389925 390213 -101482956 - AluSx SINE Alu -23 289 1 302 191 48 34 chr13 390213 390347 -101482822 + (TA)n Simple_repeat Simple_repeat 12 150 0 25 65 0 0 chr13 391283 391329 -101481840 + AT_rich Low_complexity Low_complexity 1 46 0 207 271 0 0 chr13 391406 391454 -101481715 - L2 LINE L2 -1 3271 3224 194 246 0 49 chr13 391856 391917 -101481252 - L2 LINE L2 -12 3301 3244 459 239 63 28 chr13 391917 392059 -101481110 - MER104 DNA Tc2 0 180 34 1804 169 0 7 chr13 392159 392455 -101480714 + AluJo SINE Alu 1 294 -18 452 280 168 19 chr13 392459 392678 -101480491 - MIR SINE MIR -11 251 4 219 282 122 53 chr13 394360 394491 -101478678 - MER5A DNA MER1_type 0 189 50 334 209 305 38 chr13 394496 394601 -101478568 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr13 395240 395275 -101477894 + AT_rich Low_complexity Low_complexity 1 35 0 392 275 83 21 chr13 395501 395736 -101477433 + MER102b DNA MER1_type 81 340 -1 21 0 0 0 chr13 396116 396137 -101477032 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 193 28 chr13 396799 396908 -101476261 - L2 LINE L2 0 3272 3146 2189 115 0 0 chr13 397607 397894 -101475275 - AluSc SINE Alu -22 287 1 213 255 0 0 chr13 397928 397975 -101475194 + (TTA)n Simple_repeat Simple_repeat 2 48 0 617 158 167 0 chr13 398830 398944 -101474225 - FLAM_C SINE Alu 0 133 1 622 208 0 0 chr13 399892 399998 -101473171 + U6 snRNA snRNA 1 106 -1 191 325 91 26 chr13 400621 400775 -101472394 - MIR SINE MIR -42 220 57 22 0 0 0 chr13 401262 401284 -101471885 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 401512 401554 -101471615 + AT_rich Low_complexity Low_complexity 1 42 0 2041 195 35 16 chr13 401554 401980 -101471189 - Tigger2a DNA MER2_type 0 434 1 206 139 47 0 chr13 402232 402275 -101470894 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 847 187 0 0 chr13 402602 402741 -101470428 - FAM SINE Alu -25 160 22 1353 167 3 110 chr13 402776 403111 -101470058 - AluJb SINE Alu -13 299 1 2778 190 48 9 chr13 403475 404016 -101469153 - MER68 LTR ERV1 0 562 1 27 0 0 0 chr13 404419 404446 -101468723 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 7 10 chr13 404569 404879 -101468290 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 404879 404905 -101468264 + AT_rich Low_complexity Low_complexity 1 26 0 1918 150 17 0 chr13 404939 405233 -101467936 - AluSq SINE Alu -14 299 1 2645 155 0 39 chr13 405243 405701 -101467468 - L1MC1 LINE L1 0 6333 5894 836 128 53 0 chr13 406705 406838 -101466331 - Tigger7 DNA MER2_type 0 2587 2448 692 165 44 25 chr13 406839 406997 -101466172 + MER21A LTR ERV1 747 907 -24 629 236 0 24 chr13 407439 407562 -101465607 - FLAM_A SINE Alu -17 125 6 274 332 74 39 chr13 407718 407947 -101465222 - MIR SINE MIR -6 256 20 736 202 0 24 chr13 410960 411084 -101462085 + FLAM_A SINE Alu 1 121 -12 2051 125 0 39 chr13 411320 411625 -101461544 + AluSx SINE Alu 1 293 -19 1245 207 30 54 chr13 411800 412095 -101461074 - AluJb SINE Alu -12 300 13 21 89 0 0 chr13 412191 412247 -101460922 + AT_rich Low_complexity Low_complexity 1 56 0 6731 36 0 0 chr13 412468 413246 -101459923 - L1PA5 LINE L1 -1 6153 5376 213 267 40 0 chr13 413407 413482 -101459687 - MIR SINE MIR -108 154 77 1449 209 57 29 chr13 413509 413859 -101459310 - MER45B DNA AcHobo -236 804 445 868 94 75 13 chr13 414541 414849 -101458320 - LTR7 LTR ERV1 0 450 1 184 307 45 23 chr13 415069 415157 -101458012 - MIR SINE MIR -115 147 58 2065 171 22 16 chr13 417667 418030 -101455139 + MLT1A1 LTR MaLR 1 365 0 283 323 58 74 chr13 419022 419211 -101453958 - MIR SINE MIR -52 210 25 629 207 30 61 chr13 421529 421572 -101451597 - MIR SINE MIR -97 165 122 4582 119 32 32 chr13 421572 422263 -101450906 + LTR8 LTR ERV1 1 691 0 629 207 30 61 chr13 422263 422383 -101450786 - MIR SINE MIR -140 122 7 1658 88 0 0 chr13 422809 423024 -101450145 + L1PA6 LINE L1 5940 6154 0 415 306 48 61 chr13 423257 423486 -101449683 + MIR SINE MIR 11 236 -26 796 216 55 31 chr13 423588 423842 -101449327 + LTR37B LTR ERV1 209 468 0 281 248 40 50 chr13 424209 424310 -101448859 - MLT2E LTR ERVL -497 131 32 437 255 51 83 chr13 424569 424785 -101448384 + MIR SINE MIR 1 209 -53 2191 110 7 0 chr13 424916 425206 -101447963 + AluSq SINE Alu 1 292 -21 2430 87 10 0 chr13 425444 425754 -101447415 + AluSp SINE Alu 1 313 0 1409 176 45 84 chr13 425992 426351 -101446818 + MLT1A1 LTR MaLR 21 365 0 1076 94 6 17 chr13 426662 426842 -101446327 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1665 205 0 3 chr13 426855 427157 -101446012 - AluJo SINE Alu -11 301 1 2767 139 59 12 chr13 427329 427818 -101445351 + L1MB2 LINE L1 5658 6169 -2 29 28 0 0 chr13 428601 428637 -101444532 + AT_rich Low_complexity Low_complexity 1 36 0 7349 17 0 1 chr13 428966 429797 -101443372 - L1PA2 LINE L1 0 6155 5326 4569 196 52 13 chr13 429802 430873 -101442296 - L1 LINE L1 -1524 6041 4929 234 128 0 0 chr13 430877 430916 -101442253 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 * 683 164 30 12 chr13 430910 431075 -101442094 + CT-rich Low_complexity Low_complexity 3 170 0 1190 178 4 35 chr13 431075 431339 -101441830 - AluJo SINE Alu 0 343 87 4313 257 43 15 chr13 431339 433547 -101439622 - L1 LINE L1 -2753 4812 2513 2616 11 0 0 chr13 433547 433829 -101439340 - AluYb8 SINE Alu -4 314 33 4313 257 43 15 chr13 433829 434396 -101438773 - L1 LINE L1 -5052 2513 1963 481 335 55 24 chr13 434593 434847 -101438322 - L1 LINE L1 -4890 1675 1414 411 248 0 19 chr13 434912 435017 -101438152 - L1 LINE L1 -6921 568 466 234 327 47 0 chr13 435164 435271 -101437898 + MIR SINE MIR 80 191 -71 25 65 0 0 chr13 435393 435439 -101437730 + AT_rich Low_complexity Low_complexity 1 46 0 1445 219 47 53 chr13 435716 436251 -101436918 - MER67C LTR ERV1 0 514 22 389 295 83 100 chr13 438036 438588 -101434581 + L1MB4 LINE L1 786 1328 -5521 1257 192 0 48 chr13 440195 440466 -101432703 - AluJb SINE Alu -50 262 5 512 240 89 34 chr13 440468 440647 -101432522 - MLT1D LTR MaLR -312 193 5 660 261 61 0 chr13 441147 441312 -101431857 - MIR SINE MIR -72 190 16 243 152 0 0 chr13 441403 441449 -101431720 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 2201 143 103 137 chr13 442578 443171 -101429998 + LTR4 LTR ERV1 24 596 0 1565 210 10 16 chr13 443213 443527 -101429642 - AluJo SINE Alu 0 312 1 338 243 18 72 chr13 443569 443680 -101429489 - L1ME4a LINE L1 -3 6118 6014 224 228 0 0 chr13 443729 443786 -101429383 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 239 324 27 47 chr13 443797 443945 -101429224 - MIR SINE MIR -1 261 117 522 257 47 65 chr13 444152 444366 -101428803 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 444366 444415 -101428754 + (TG)n Simple_repeat Simple_repeat 1 49 0 2046 115 0 4 chr13 444545 444823 -101428346 + AluSq SINE Alu 9 285 -28 1184 258 14 14 chr13 445398 445759 -101427410 + L1MB4 LINE L1 4075 4435 -2413 * 2793 244 76 12 chr13 445749 446673 -101426496 + L1MB4 LINE L1 5054 6104 -778 2049 124 0 0 chr13 446673 446956 -101426213 + AluSq SINE Alu 3 285 -28 2793 244 76 12 chr13 446956 447597 -101425572 + L1MB4 LINE L1 6104 6702 -180 608 238 60 12 chr13 447609 447777 -101425392 + L1M4 LINE L1 4690 4865 -1281 517 271 54 0 chr13 447797 447963 -101425206 + L1MB4 LINE L1 6708 6882 0 9974 196 44 27 chr13 448073 450116 -101423053 + L1MA4 LINE L1 2128 4808 -1492 2121 101 18 4 chr13 450116 450417 -101422752 + AluSg SINE Alu 1 305 0 9974 196 44 27 chr13 450417 451191 -101421978 + L1MA4 LINE L1 4808 5567 -733 666 225 5 52 chr13 451189 451380 -101421789 - L1M4 LINE L1 -6355 187 6 * 2717 184 4 2 chr13 451521 452006 -101421163 + L1MA4 LINE L1 5620 6105 -195 398 276 94 0 chr13 452064 452234 -101420935 + L1M4 LINE L1 2473 2658 -3488 5617 235 64 28 chr13 452239 454258 -101418911 + L1M4 LINE L1 2700 4791 -1355 311 0 26 0 chr13 454259 454298 -101418871 + (TA)n Simple_repeat Simple_repeat 1 40 0 250 368 40 8 chr13 454650 454775 -101418394 + L2 LINE L2 3142 3270 -2 594 202 17 6 chr13 454863 455036 -101418133 + GA-rich Low_complexity Low_complexity 3 177 0 2474 156 20 0 chr13 455112 455509 -101417660 + MSTA-int LTR MaLR 1247 1651 0 2062 145 89 8 chr13 455534 455906 -101417263 + MSTA LTR MaLR 27 428 0 24 53 0 0 chr13 456004 456042 -101417127 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 456159 456189 -101416980 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr13 456839 456880 -101416289 + AT_rich Low_complexity Low_complexity 1 41 0 2786 13 0 3 chr13 457705 458016 -101415153 + AluYa5 SINE Alu 1 310 -1 2509 65 0 3 chr13 458327 458637 -101414532 + AluY SINE Alu 1 309 -2 24 77 0 0 chr13 458664 458716 -101414453 + AT_rich Low_complexity Low_complexity 1 52 0 4059 190 33 21 chr13 458771 460340 -101412829 - L1MB1 LINE L1 -45 6123 4545 312 27 0 0 chr13 460963 461000 -101412169 + (CA)n Simple_repeat Simple_repeat 2 38 0 33 43 0 0 chr13 463199 463246 -101409923 + AT_rich Low_complexity Low_complexity 1 47 0 1471 201 14 10 chr13 463888 464181 -101408988 + AluJb SINE Alu 3 296 -16 496 182 0 0 chr13 464540 464612 -101408557 - MER58A DNA MER1_type -1 223 152 496 250 0 9 chr13 464612 464728 -101408441 - MER58A DNA MER1_type 0 115 1 367 333 57 13 chr13 464865 465024 -101408145 + L2 LINE L2 2819 2984 -329 2648 174 99 36 chr13 465258 465923 -101407246 - MER39 LTR ERV1 0 707 1 262 209 22 143 chr13 466736 466827 -101406342 - MER77 LTR ERV1 -515 90 11 225 152 22 0 chr13 466837 466883 -101406286 + HAL1 LINE L1 2327 2373 -134 27 49 0 0 chr13 467893 467934 -101405235 + AT_rich Low_complexity Low_complexity 1 41 0 2332 68 0 40 chr13 469210 469532 -101403637 - AluY SINE Alu -2 309 1 751 213 38 47 chr13 469581 469816 -101403353 + pTR5 LTR ERV1 743 975 -1463 3408 94 78 166 chr13 470030 470784 -101402385 + LTR12 LTR ERV1 1 688 0 225 0 0 0 chr13 471792 471817 -101401352 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2564 183 55 6 chr13 471977 472469 -101400700 - MLT2B1 LTR ERVL -4 516 1 22 35 0 0 chr13 473085 473114 -101400055 + AT_rich Low_complexity Low_complexity 1 29 0 2353 64 3 14 chr13 473277 473573 -101399596 + AluY SINE Alu 1 293 -18 1155 283 89 15 chr13 473659 474062 -101399107 + LTR16A LTR ERVL 17 449 -1 263 297 22 72 chr13 474062 474200 -101398969 + MER94 DNA DNA 4 134 0 357 319 48 24 chr13 474222 474388 -101398781 + MIR SINE MIR 63 232 -30 * 364 274 61 17 chr13 474384 474513 -101398656 - MIR SINE MIR -63 145 37 650 302 32 29 chr13 474621 474899 -101398270 - MLT1K LTR MaLR -10 578 300 829 319 88 0 chr13 474994 475314 -101397855 + L2 LINE L2 1321 1668 -1646 231 255 89 76 chr13 476077 476234 -101396935 - MIR SINE MIR -44 218 60 335 320 138 57 chr13 476308 476786 -101396383 + MLT1F LTR MaLR 18 534 -8 256 331 24 24 chr13 476918 477042 -101396127 + MIR SINE MIR 29 152 -110 21 89 0 0 chr13 477099 477155 -101396014 + AT_rich Low_complexity Low_complexity 1 56 0 303 319 34 8 chr13 477239 477358 -101395811 - L2 LINE L2 0 3313 3192 4496 256 68 41 chr13 478397 481211 -101391958 + L1M4 LINE L1 2 2991 -3653 593 219 103 0 chr13 481266 481421 -101391748 + L1M4 LINE L1 4026 4196 -2448 6378 226 19 8 chr13 481436 482862 -101390307 + L1PA16 LINE L1 5 1257 -5592 301 170 0 0 chr13 482857 482904 -101390265 - L1PA15-16 LINE L1 -5691 1158 1112 * 2562 100 5 24 chr13 482915 483286 -101389883 - THE1B LTR MaLR 0 364 1 9766 118 17 29 chr13 483286 484752 -101388417 - THE1B-int LTR MaLR 0 1580 133 5091 188 15 20 chr13 484746 486320 -101386849 + L1PA16 LINE L1 5302 6864 -5 * 689 233 28 40 chr13 486325 486578 -101386591 + L1M4 LINE L1 4204 4453 -2191 2535 188 13 15 chr13 486597 487284 -101385885 + L1M4 LINE L1 5592 6277 -405 4842 95 28 0 chr13 487664 487885 -101385284 + L1PA13 LINE L1 5414 5627 -536 2581 107 0 27 chr13 487885 488259 -101384910 - THE1B LTR MaLR 0 364 1 4842 95 28 0 chr13 488259 488760 -101384409 + L1PA13 LINE L1 5627 6156 -7 201 147 0 0 chr13 489037 489071 -101384098 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 178 68 27 chr13 491286 491359 -101381810 - L1ME4a LINE L1 -78 6043 5968 1993 201 8 2 chr13 491365 491763 -101381406 - L1PA16 LINE L1 -3 6163 5764 1103 243 73 64 chr13 492171 492619 -101380550 + MLT1C LTR MaLR 3 462 -5 189 0 0 0 chr13 492650 492671 -101380498 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 2136 67 0 39 chr13 493258 493543 -101379626 + AluY SINE Alu 38 311 0 201 176 0 0 chr13 493601 493635 -101379534 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 304 270 40 43 chr13 495041 495246 -101377923 - MIR SINE MIR 0 262 8 196 313 15 30 chr13 495457 495524 -101377645 - MIR SINE MIR -15 247 182 2449 69 0 10 chr13 495805 496108 -101377061 - AluY SINE Alu -11 300 1 318 303 113 21 chr13 496531 496769 -101376400 - MIR SINE MIR 0 262 3 243 0 0 0 chr13 497786 497813 -101375356 + (A)n Simple_repeat Simple_repeat 1 27 0 1117 72 0 0 chr13 498946 499085 -101374084 + AluY SINE Alu 156 294 -17 306 338 29 43 chr13 499877 500016 -101373153 - MER5A DNA MER1_type -1 188 52 1850 138 32 11 chr13 500120 500403 -101372766 + AluSg SINE Alu 1 289 -21 1985 140 64 3 chr13 500637 500980 -101372189 - THE1B LTR MaLR 0 364 1 1369 209 21 78 chr13 501114 501501 -101371668 + MLT1A1 LTR MaLR 1 365 0 250 315 28 42 chr13 503239 503382 -101369787 + HAL1b LINE L1 245 385 -963 1032 306 70 30 chr13 503499 504396 -101368773 + L1MEc LINE L1 150 1245 -4868 488 229 118 79 chr13 504417 504722 -101368447 + L1MEc LINE L1 1440 1756 -4640 3433 29 0 17 chr13 504727 505147 -101368022 - L1PA4 LINE L1 -3 6152 5740 237 54 27 0 chr13 505147 505184 -101367985 + L1P LINE L1 4890 4927 -1219 2321 114 0 0 chr13 505228 505535 -101367634 + AluSg SINE Alu 1 307 -3 4963 170 8 22 chr13 505715 506891 -101366278 - L1PA16 LINE L1 -1 6165 5007 813 271 65 23 chr13 506939 507016 -101366153 + L1MEc LINE L1 1974 2046 -4169 3285 243 41 30 chr13 507016 507147 -101366022 - Tigger6a DNA MER2_type -514 1083 955 1731 192 3 7 chr13 507147 507454 -101365715 + AluJb SINE Alu 1 306 -6 3285 243 41 30 chr13 507454 508392 -101364777 - Tigger6a DNA MER2_type -642 955 2 813 271 65 23 chr13 508392 509070 -101364099 + L1MEc LINE L1 2046 2732 -3483 1749 242 37 69 chr13 510206 510800 -101362369 - MER77 LTR ERV1 -6 599 25 472 213 22 0 chr13 510810 510946 -101362223 + CT-rich Low_complexity Low_complexity 2 140 0 1303 235 47 72 chr13 511041 511312 -101361857 + MLT1D LTR MaLR 5 258 -247 2150 102 7 7 chr13 511312 511605 -101361564 + AluSc SINE Alu 1 293 -16 1303 235 47 72 chr13 511605 511847 -101361322 + MLT1D LTR MaLR 258 505 0 1600 209 0 10 chr13 512834 513136 -101360033 + AluJo SINE Alu 11 309 -3 1499 214 51 2 chr13 514311 514704 -101358465 + MER54A LTR ERVL 1 412 -489 2072 118 74 15 chr13 514713 515051 -101358118 + THE1B LTR MaLR 7 364 0 1236 253 46 10 chr13 515089 515504 -101357665 + MER54A LTR ERVL 472 901 0 189 0 0 0 chr13 516220 516241 -101356928 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr13 516308 516337 -101356832 + AT_rich Low_complexity Low_complexity 1 29 0 9971 31 1 0 chr13 516337 518304 -101354865 - L1PA2 LINE L1 0 6155 4190 13436 40 1 0 chr13 518304 520048 -101353121 + L1PA2 LINE L1 2440 4185 -1961 26 0 0 0 chr13 520136 520162 -101353007 + AT_rich Low_complexity Low_complexity 1 26 0 317 263 26 20 chr13 520277 520429 -101352740 + (TA)n Simple_repeat Simple_repeat 1 153 0 31 58 0 0 chr13 520586 520638 -101352531 + AT_rich Low_complexity Low_complexity 1 52 0 2212 187 91 11 chr13 521204 521754 -101351415 + LTR49 LTR ERV1 1 594 -1 1775 163 58 21 chr13 521938 522367 -101350802 + LTR56 LTR ERV1 1 445 0 461 246 144 5 chr13 522507 522694 -101350475 - MER20 DNA MER1_type -3 216 4 25 51 0 0 chr13 523180 523219 -101349950 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr13 523246 523281 -101349888 + AT_rich Low_complexity Low_complexity 1 35 0 1391 181 87 56 chr13 523674 523705 -101349464 + LTR49 LTR ERV1 1 30 -565 2017 122 7 4 chr13 523705 523984 -101349185 - AluSq SINE Alu -20 293 14 1391 181 87 56 chr13 523984 524366 -101348803 + LTR49 LTR ERV1 30 427 -168 232 164 14 14 chr13 524400 524473 -101348696 + (TA)n Simple_repeat Simple_repeat 2 74 0 765 150 23 0 chr13 525738 525871 -101347298 + MSTB1 LTR MaLR 1 136 -296 731 320 64 63 chr13 525952 526832 -101346337 - L1MEc LINE L1 -4983 1222 351 361 233 39 23 chr13 526957 527086 -101346083 - L1MEc LINE L1 -6211 185 55 24 0 0 0 chr13 527340 527364 -101345805 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 527480 527501 -101345668 + AT_rich Low_complexity Low_complexity 1 21 0 252 300 70 19 chr13 527650 527860 -101345309 - L1MCa LINE L1 -4641 2080 1657 328 272 108 52 chr13 527908 528121 -101345048 - L1MCa LINE L1 -4802 1738 1514 198 0 0 0 chr13 528204 528226 -101344943 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 40398 56 3 2 chr13 528226 534356 -101338813 - L1PA4 LINE L1 -13 6142 9 695 126 7 0 chr13 534379 543990 -101329179 - CER Satellite Satellite 0 9671 1 1215 49 0 19 chr13 543995 544157 -101329012 + L1PA4 LINE L1 5996 6154 -1 22 0 0 0 chr13 544157 544179 -101328990 + AT_rich Low_complexity Low_complexity 1 22 0 2153 124 3 10 chr13 544517 544824 -101328345 + AluSp SINE Alu 1 305 -8 2051 119 10 0 chr13 544861 545156 -101328013 - AluSx SINE Alu -14 298 1 1370 180 26 16 chr13 546062 546490 -101326679 + MER67C LTR ERV1 218 709 -1 2219 174 16 5 chr13 546980 547412 -101325757 + LTR56 LTR ERV1 9 445 0 1996 127 3 3 chr13 549136 549419 -101323750 + AluSp SINE Alu 1 283 -30 252 216 18 108 chr13 549503 549614 -101323555 + MIR SINE MIR 153 253 -9 235 331 162 7 chr13 549831 549979 -101323190 + MER5A DNA MER1_type 19 189 0 2247 98 0 29 chr13 550833 551148 -101322021 + AluSx SINE Alu 1 306 -6 429 216 92 60 chr13 551480 551698 -101321471 - L1MC4 LINE L1 -537 7505 7281 357 342 161 0 chr13 551844 552005 -101321164 + MER5A DNA MER1_type 2 188 -1 203 413 0 0 chr13 553251 553326 -101319843 + L2 LINE L2 2742 2816 -498 22 35 0 0 chr13 553779 553808 -101319361 + AT_rich Low_complexity Low_complexity 1 29 0 3851 232 51 17 chr13 553883 556001 -101317168 - L1MA9 LINE L1 -25 6175 3981 451 288 31 18 chr13 556006 556169 -101317000 - L1MA9 LINE L1 -5090 865 701 481 353 20 5 chr13 556300 556501 -101316668 - L1MA9 LINE L1 -5404 551 348 1868 103 4 8 chr13 556510 556772 -101316397 - AluSq SINE Alu -52 261 1 1681 202 51 33 chr13 556990 557045 -101316124 - L1MB2 LINE L1 -18 7572 7519 1226 243 7 10 chr13 557045 557333 -101315836 + AluJo SINE Alu 2 288 -24 1681 202 51 33 chr13 557333 557748 -101315421 - L1MB2 LINE L1 -71 7519 7092 204 125 62 0 chr13 557748 557796 -101315373 + (TA)n Simple_repeat Simple_repeat 1 51 0 324 124 66 0 chr13 557813 557950 -101315219 + (TA)n Simple_repeat Simple_repeat 2 147 0 33 25 0 0 chr13 558091 558131 -101315038 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 558177 558199 -101314970 + AT_rich Low_complexity Low_complexity 1 22 0 1280 276 86 20 chr13 558218 559053 -101314116 - L1MB2 LINE L1 -607 6983 6095 784 285 40 53 chr13 559183 559334 -101313835 - L1MB2 LINE L1 -3262 4303 4151 1327 206 33 11 chr13 559334 559610 -101313559 - AluJb SINE Alu -30 282 1 784 285 40 53 chr13 559610 559740 -101313429 - L1MB2 LINE L1 -3414 4151 4021 1931 218 36 2 chr13 559740 560152 -101313017 + MSTB LTR MaLR 1 426 0 784 285 40 53 chr13 560152 560525 -101312644 - L1MB2 LINE L1 -3544 4021 3657 478 185 0 0 chr13 560525 560606 -101312563 - AluJ/FLAM SINE Alu -228 84 4 509 271 66 35 chr13 560690 561056 -101312113 - L1MB2 LINE L1 -3922 3645 3269 1983 125 0 4 chr13 561066 561382 -101311787 - AluSg1 SINE Alu 0 317 3 511 259 0 9 chr13 561640 561756 -101311413 - FLAM_C SINE Alu -28 115 1 270 254 9 45 chr13 561757 561867 -101311302 - L1MB2 LINE L1 -4573 2992 2887 369 264 26 109 chr13 561907 562076 -101311093 - L1MB2 LINE L1 -5031 2536 2382 2231 78 0 3 chr13 562076 562403 -101310766 - AluY SINE Alu 0 326 1 369 264 26 109 chr13 562403 562425 -101310744 - L1MB2 LINE L1 -5185 2382 2360 1111 267 54 43 chr13 562816 563112 -101310057 - L1MB2 LINE L1 -27 6380 6089 1835 143 17 10 chr13 563112 563405 -101309764 - AluSp SINE Alu -18 295 1 1111 267 54 43 chr13 563405 563549 -101309620 - L1MB2 LINE L1 -318 6089 5932 2131 108 0 7 chr13 563549 563845 -101309324 + AluY SINE Alu 1 294 -17 1111 267 54 43 chr13 563845 563868 -101309301 - L1MB2 LINE L1 -475 5932 5911 737 264 52 18 chr13 563871 564200 -101308969 - L1MB2 LINE L1 -1296 5086 4747 586 287 106 70 chr13 564203 564493 -101308676 - L1MB2 LINE L1 -3245 3137 2859 1788 146 33 0 chr13 564493 564767 -101308402 - AluSx SINE Alu -18 294 12 586 287 106 70 chr13 564767 564792 -101308377 - L1MB2 LINE L1 -3523 2859 2836 2126 112 10 0 chr13 564792 565097 -101308072 - AluY SINE Alu -3 308 1 586 287 106 70 chr13 565097 566535 -101306634 - L1MB2 LINE L1 -3546 2836 1314 1251 232 21 7 chr13 566535 566819 -101306350 - AluJb SINE Alu -24 288 1 586 287 106 70 chr13 566819 566847 -101306322 - L1MB2 LINE L1 -5068 1314 1288 357 313 143 24 chr13 566849 567185 -101305984 - L1MB2 LINE L1 -4862 1451 1076 849 162 37 11 chr13 571666 571857 -101301312 - L1MA3 LINE L1 0 6305 6110 1928 156 0 7 chr13 572491 572798 -101300371 - AluSg SINE Alu -1 309 5 2054 136 0 0 chr13 573491 573778 -101299391 + AluSc SINE Alu 7 293 -16 565 213 173 4 chr13 574521 574746 -101298423 - L1MA8 LINE L1 -4 6287 6025 4118 230 80 30 chr13 574757 576499 -101296670 - L1MA8 LINE L1 -359 5941 4081 2085 116 3 0 chr13 576499 576793 -101296376 + AluY SINE Alu 1 295 -16 4118 230 80 30 chr13 576793 576988 -101296181 - L1MA8 LINE L1 -2219 4081 3897 5229 273 48 16 chr13 576999 578454 -101294715 + L1 LINE L1 3310 4842 -1304 198 0 0 0 chr13 578454 578476 -101294693 + (CA)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr13 578476 578932 -101294237 + L1 LINE L1 4842 5282 -864 3650 203 39 17 chr13 578935 579753 -101293416 + L1PA16 LINE L1 5317 6152 -14 1026 152 162 0 chr13 579962 580160 -101293009 - MER30 DNA MER1_type 0 230 1 24 67 0 0 chr13 580789 580834 -101292335 + AT_rich Low_complexity Low_complexity 1 45 0 1200 126 6 0 chr13 581154 581328 -101291841 - AluSx SINE Alu -137 175 1 2337 82 0 3 chr13 582651 582957 -101290212 + AluY SINE Alu 1 305 -6 21 36 0 0 chr13 583161 583189 -101289980 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 583329 583350 -101289819 + AT_rich Low_complexity Low_complexity 1 21 0 3522 30 0 5 chr13 583465 583894 -101289275 - L1P LINE L1 -942 5204 4778 2806 21 0 0 chr13 583894 584221 -101288948 + L1PA2 LINE L1 5829 6155 0 2000 138 0 0 chr13 584565 584856 -101288313 - AluSq SINE Alu -22 291 1 21 71 0 0 chr13 584958 585000 -101288169 + AT_rich Low_complexity Low_complexity 1 42 0 7741 98 4 1 chr13 585055 586123 -101287046 + MER11C LTR ERVK 1 1071 0 1948 136 3 10 chr13 586687 586988 -101286181 - AluSq SINE Alu -14 299 1 310 173 0 0 chr13 587100 587152 -101286017 - MER51D LTR ERV1 -106 551 500 6522 156 18 7 chr13 588227 589371 -101283798 - THE1C-int LTR MaLR -158 1422 215 359 215 0 0 chr13 589371 589436 -101283733 - THE1C-int LTR MaLR -1515 65 1 1710 148 51 46 chr13 589436 589808 -101283361 - THE1C LTR MaLR 0 375 2 1984 104 32 26 chr13 590321 590630 -101282539 - AluY SINE Alu 0 311 1 12722 46 1 1 chr13 591420 593767 -101279402 - L1PA5 LINE L1 -9 6145 3797 1027 238 88 68 chr13 593942 594356 -101278813 - MLT1C LTR MaLR 0 467 42 1657 193 5 63 chr13 594356 594399 -101278770 + MLT1A1 LTR MaLR 5 49 -316 1996 110 35 21 chr13 594399 594689 -101278480 - AluSx SINE Alu -18 294 1 1657 193 5 63 chr13 594689 595028 -101278141 + MLT1A1 LTR MaLR 49 365 0 1027 238 88 68 chr13 595028 595066 -101278103 - MLT1C LTR MaLR -425 42 6 24 53 0 0 chr13 595341 595379 -101277790 + AT_rich Low_complexity Low_complexity 1 38 0 200 232 43 0 chr13 595421 595490 -101277679 + (TG)n Simple_repeat Simple_repeat 1 72 0 286 313 73 10 chr13 595559 595655 -101277514 - L2 LINE L2 -20 3252 3151 2129 106 0 0 chr13 595933 596247 -101276922 + L1PA7 LINE L1 5846 6159 0 23 33 0 0 chr13 596318 596348 -101276821 + AT_rich Low_complexity Low_complexity 1 30 0 882 316 63 29 chr13 597645 598135 -101275034 - LTR33 LTR ERVL -12 509 3 505 276 131 67 chr13 598571 598976 -101274193 - LTR33A LTR ERVL -92 431 1 242 281 152 30 chr13 599619 599783 -101273386 + MIR3 SINE MIR 16 199 -9 23 0 0 0 chr13 600228 600251 -101272918 + AT_rich Low_complexity Low_complexity 1 23 0 915 155 53 63 chr13 600764 600970 -101272199 - L1PA16 LINE L1 0 6166 5963 2184 125 0 0 chr13 601185 601480 -101271689 + AluSg SINE Alu 1 295 -15 207 0 0 0 chr13 602915 602938 -101270231 + (TCC)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr13 603059 603101 -101270068 + AT_rich Low_complexity Low_complexity 1 42 0 2089 289 57 43 chr13 603803 604509 -101268660 + L2 LINE L2 1710 2430 -884 519 276 74 0 chr13 604509 604672 -101268497 - MER96 DNA MER1_type 0 175 1 2089 289 57 43 chr13 604672 604775 -101268394 + L2 LINE L2 2430 2530 -784 1536 209 6 3 chr13 604941 605260 -101267909 - L1MC2 LINE L1 -1 6343 6024 233 337 45 11 chr13 605617 605706 -101267463 + L2 LINE L2 3125 3216 -56 269 26 26 0 chr13 608745 608783 -101264386 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 10798 43 5 38 chr13 608785 608871 -101264298 - SVA Other Other -3 1383 1 10798 45 5 40 chr13 608871 610264 -101262905 - SVA Other Other -42 1344 1 248 252 35 87 chr13 613721 613836 -101259333 - MIR SINE MIR -42 220 112 293 333 6 51 chr13 615820 615976 -101257193 + MIR3 SINE MIR 55 203 -5 506 103 0 13 chr13 616468 616546 -101256623 + MADE1 DNA Mariner 1 77 -3 648 258 6 0 chr13 616847 617006 -101256163 + MER5B DNA MER1_type 1 160 -18 665 219 55 7 chr13 617829 617975 -101255194 + L1MC4a LINE L1 6604 6756 -1052 444 296 29 6 chr13 618631 618803 -101254366 + L1MC4 LINE L1 7724 7899 -143 240 222 0 0 chr13 618880 618925 -101254244 + L1ME3A LINE L1 5625 5669 -501 381 249 52 55 chr13 619417 619706 -101253463 + L1ME3A LINE L1 5657 5990 -180 1590 199 0 7 chr13 620110 620392 -101252777 - AluJb SINE Alu -30 282 3 1336 243 0 24 chr13 620426 620722 -101252447 + AluJo SINE Alu 1 289 -23 2392 94 0 0 chr13 620916 621214 -101251955 + AluY SINE Alu 1 298 -13 265 183 195 12 chr13 622081 622163 -101251006 - MER5A DNA MER1_type -83 106 10 288 137 0 0 chr13 623427 623478 -101249691 + (CA)n Simple_repeat Simple_repeat 1 51 0 2228 98 0 7 chr13 623599 623895 -101249274 + AluSg1 SINE Alu 1 294 -15 486 343 94 4 chr13 626398 626524 -101246645 - MIR SINE MIR -8 254 141 7315 69 51 1 chr13 626524 627447 -101245722 - LTR5 LTR ERVK 0 969 1 486 343 94 4 chr13 627447 627553 -101245616 - MIR SINE MIR -121 141 1 571 257 14 0 chr13 627659 627807 -101245362 - MIR SINE MIR 0 262 113 1860 118 0 0 chr13 630594 630840 -101242329 + AluSq SINE Alu 1 246 -67 2168 122 3 3 chr13 631121 631424 -101241745 - AluSx SINE Alu -8 304 2 313 317 32 16 chr13 631507 631630 -101241539 - MIR SINE MIR -65 143 19 777 200 36 12 chr13 632565 632730 -101240439 + MER45A DNA AcHobo 10 178 0 338 341 28 23 chr13 632750 632926 -101240243 - MIR3 SINE MIR -16 192 16 266 330 71 9 chr13 634825 634937 -101238232 - L2 LINE L2 -3 3269 3151 2235 104 3 0 chr13 635798 636095 -101237074 - AluY SINE Alu -13 298 1 1791 151 7 7 chr13 636251 636536 -101236633 + AluSx SINE Alu 1 285 -27 228 111 0 0 chr13 636537 636573 -101236596 + (CA)n Simple_repeat Simple_repeat 2 37 0 729 162 5 136 chr13 636836 637027 -101236142 - FAM SINE Alu -9 40 1 288 96 96 0 chr13 637036 637088 -101236081 + Charlie7 DNA MER1_type 2556 2612 0 255 331 54 0 chr13 637244 637373 -101235796 + L1MC/D LINE L1 5497 5635 -486 1155 136 10 40 chr13 637373 637571 -101235598 - AluSg/x SINE Alu -12 297 106 188 67 33 0 chr13 637571 637601 -101235568 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 28 61 0 0 chr13 638524 638573 -101234596 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 644214 644235 -101228934 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 644272 644293 -101228876 + AT_rich Low_complexity Low_complexity 1 21 0 1670 191 3 13 chr13 644528 644832 -101228337 - AluSx SINE Alu -11 301 1 1921 126 25 0 chr13 646004 646309 -101226860 + AluSx SINE Alu 1 312 0 2726 268 65 25 chr13 646309 647637 -101225532 + L1M4 LINE L1 3130 4511 -1635 2093 286 71 50 chr13 647635 649079 -101224090 + L1 LINE L1 17 1429 -6136 * 1981 153 0 0 chr13 649079 649361 -101223808 + AluSx SINE Alu 1 282 -30 279 0 0 0 chr13 649364 649395 -101223774 + (CA)n Simple_repeat Simple_repeat 1 31 0 2093 286 71 50 chr13 649395 649619 -101223550 + L1 LINE L1 1430 2389 -5176 * 3383 183 19 84 chr13 649602 650260 -101222909 + L1 LINE L1 5405 5986 -1579 2269 114 0 0 chr13 650260 650568 -101222601 + AluSg SINE Alu 1 308 -2 3383 183 19 84 chr13 650568 650844 -101222325 + L1 LINE L1 5986 6278 -1287 207 0 0 0 chr13 650844 650867 -101222302 + (T)n Simple_repeat Simple_repeat 1 23 0 1325 209 11 28 chr13 651428 651715 -101221454 + AluJo SINE Alu 1 282 -30 23 78 0 0 chr13 653054 653105 -101220064 + AT_rich Low_complexity Low_complexity 1 51 0 37 39 0 0 chr13 653674 653725 -101219444 + AT_rich Low_complexity Low_complexity 1 51 0 2339 70 0 0 chr13 655417 655701 -101217468 - AluYa5 SINE Alu -9 302 19 1716 213 54 16 chr13 655701 656188 -101216981 + L1 LINE L1 6263 6767 -814 359 237 79 54 chr13 658274 658687 -101214482 + HSREP522 Satellite telomeric 1 423 -112 360 256 0 25 chr13 659885 660006 -101213163 + CT-rich Low_complexity Low_complexity 3 120 0 1515 177 22 4 chr13 661235 661506 -101211663 + LOR1-int LTR ERV1 2079 2354 -3592 888 157 38 22 chr13 661505 661690 -101211479 + LOR1-int LTR ERV1 1839 2026 -6094 * 1551 137 26 26 chr13 661690 661961 -101211208 - AluSx SINE Alu -36 276 6 3663 201 59 82 chr13 661977 663571 -101209598 - L1MEc LINE L1 -2865 4700 3142 261 0 0 0 chr13 663630 663659 -101209510 + (CA)n Simple_repeat Simple_repeat 2 30 0 212 337 0 23 chr13 663680 663766 -101209403 + L2 LINE L2 3188 3271 -1 6333 110 21 21 chr13 663854 664998 -101208171 - L1PA12 LINE L1 0 6168 5026 2924 194 7 4 chr13 664998 665560 -101207609 + L1PA12 LINE L1 4461 5024 -1122 426 273 35 41 chr13 665688 665860 -101207309 - L1MEc LINE L1 -6170 1576 1406 566 285 39 0 chr13 665904 666111 -101207058 + L1M4 LINE L1 2335 2549 -3597 * 2583 210 43 3 chr13 666107 666689 -101206480 + L1PB2 LINE L1 3795 4399 -1747 406 146 47 19 chr13 666689 666909 -101206260 + (TA)n Simple_repeat Simple_repeat 1 226 0 5662 169 27 15 chr13 666911 668303 -101204866 + L1PB2 LINE L1 4413 5832 -319 2051 159 0 0 chr13 668303 668611 -101204558 + AluSq SINE Alu 1 308 -5 5662 169 27 15 chr13 668611 668934 -101204235 + L1PB2 LINE L1 5832 6149 -2 385 299 80 25 chr13 668928 669252 -101203917 + L1M4 LINE L1 2538 2879 -3267 * 309 26 0 0 chr13 669297 669335 -101203834 + (TG)n Simple_repeat Simple_repeat 2 39 0 528 279 53 4 chr13 669404 669666 -101203503 - L1M4 LINE L1 -2982 3164 2890 398 208 75 0 chr13 669720 669840 -101203329 + L1MC4 LINE L1 7914 8042 0 361 316 105 55 chr13 669882 670310 -101202859 + L1M4 LINE L1 3812 4280 -1866 2143 127 0 0 chr13 670310 670610 -101202559 + AluSg1 SINE Alu 1 300 -9 361 316 105 55 chr13 670610 670779 -101202390 + L1M4 LINE L1 4280 4439 -1707 2016 133 7 3 chr13 670903 671205 -101201964 - AluSx SINE Alu -9 303 1 21 0 0 0 chr13 671376 671397 -101201772 + AT_rich Low_complexity Low_complexity 1 21 0 2327 81 7 0 chr13 671518 671815 -101201354 - AluY SINE Alu -12 299 1 21 0 0 0 chr13 672531 672552 -101200617 + AT_rich Low_complexity Low_complexity 1 21 0 4120 115 7 7 chr13 673688 674252 -101198917 - LTR6A LTR ERV1 0 564 1 617 239 222 0 chr13 674584 674764 -101198405 + MER58A DNA MER1_type 1 220 -4 30 0 0 0 chr13 676872 676902 -101196267 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 677527 677547 -101195622 + (CATA)n Simple_repeat Simple_repeat 2 21 0 23 54 0 0 chr13 678494 678531 -101194638 + AT_rich Low_complexity Low_complexity 1 37 0 620 363 28 15 chr13 678801 679126 -101194043 + LTR16A LTR ERVL 110 438 -12 2524 173 29 0 chr13 679743 680159 -101193010 + MSTA LTR MaLR 1 428 0 233 182 18 0 chr13 680350 680405 -101192764 + GA-rich Low_complexity Low_complexity 2 57 0 423 0 0 0 chr13 680564 680611 -101192558 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 182 0 45 chr13 680668 680734 -101192435 + CT-rich Low_complexity Low_complexity 2 64 0 401 261 57 51 chr13 680807 680964 -101192205 - MLT1G1 LTR MaLR -8 587 430 2464 46 0 0 chr13 681095 681376 -101191793 + L1PA5 LINE L1 5874 6154 0 193 269 301 0 chr13 681612 681705 -101191464 + MIR SINE MIR 20 140 -122 1944 201 39 31 chr13 681711 682253 -101190916 - MLT2A2 LTR ERVL 0 554 1 214 216 134 62 chr13 682257 682354 -101190815 + MIR SINE MIR 144 247 -15 503 338 85 52 chr13 682798 683410 -101189759 - L2 LINE L2 -954 2360 1729 249 128 0 0 chr13 685258 685305 -101187864 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2203 110 7 7 chr13 686050 686358 -101186811 + MLT2A2 LTR ERVL 1 308 -145 2136 109 7 13 chr13 687180 687482 -101185687 - AluSx SINE Alu -12 300 1 860 241 0 0 chr13 688605 688771 -101184398 - MER2 DNA MER2_type -179 166 1 525 16 0 0 chr13 688788 688850 -101184319 + (CA)n Simple_repeat Simple_repeat 2 63 0 314 301 12 0 chr13 689064 689147 -101184022 + L2 LINE L2 3186 3269 -3 36 23 0 0 chr13 689148 689191 -101183978 + AT_rich Low_complexity Low_complexity 1 43 0 219 164 16 33 chr13 689301 689362 -101183807 + (TTAAA)n Simple_repeat Simple_repeat 4 63 0 348 322 127 39 chr13 689748 690080 -101183089 - L3 LINE CR1 -910 667 307 984 199 23 14 chr13 690160 690381 -101182788 - AluJo SINE Alu -7 305 83 26 50 0 0 chr13 690383 690423 -101182746 + AT_rich Low_complexity Low_complexity 1 40 0 209 287 10 59 chr13 690897 690998 -101182171 + L2 LINE L2 559 654 -2660 302 267 40 10 chr13 691439 691540 -101181629 - L2 LINE L2 -1 3312 3209 679 123 53 18 chr13 691767 691881 -101181288 + FLAM_C SINE Alu 17 134 -9 2268 116 3 0 chr13 691954 692255 -101180914 + AluSg SINE Alu 1 302 -8 188 311 33 16 chr13 692309 692370 -101180799 + L2 LINE L2 3142 3203 -69 189 74 0 0 chr13 694677 694704 -101178465 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 241 244 0 0 chr13 694705 694750 -101178419 - MIR SINE MIR -167 95 51 1283 136 25 13 chr13 695961 697895 -101175274 - GSATX Satellite centromeric -2 1956 1 757 169 0 0 chr13 697897 698015 -101175154 + AluJb SINE Alu 190 307 -5 272 345 42 42 chr13 698211 698379 -101174790 + MLT1K LTR MaLR 189 356 -232 262 114 0 0 chr13 698455 698490 -101174679 + U2 snRNA snRNA 1 35 -153 581 191 0 9 chr13 699381 699486 -101173683 - MLT1A2 LTR MaLR 0 374 271 222 276 0 88 chr13 700291 700483 -101172686 + C-rich Low_complexity Low_complexity 5 179 0 262 289 125 0 chr13 700976 701080 -101172089 - MER5B DNA MER1_type -8 170 54 432 246 26 9 chr13 703714 703828 -101169341 + MIR SINE MIR 32 147 -115 205 232 243 22 chr13 707027 707212 -101165957 + L2 LINE L2 3014 3239 -33 185 127 27 64 chr13 707470 707580 -101165589 + (TG)n Simple_repeat Simple_repeat 1 106 0 950 166 3 3 chr13 708512 708827 -101164342 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 774 199 0 3 chr13 708845 709150 -101164019 + (TCCA)n Simple_repeat Simple_repeat 1 303 0 917 170 2 5 chr13 709191 709634 -101163535 + (TCCA)n Simple_repeat Simple_repeat 1 442 0 769 185 11 0 chr13 709662 709840 -101163329 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 603 229 0 0 chr13 709803 709973 -101163196 + (TTCA)n Simple_repeat Simple_repeat 4 173 0 * 273 111 111 63 chr13 714545 714608 -101158561 - MIR3 SINE MIR -53 155 90 222 309 41 10 chr13 715657 715754 -101157415 - MIR3 SINE MIR -43 165 66 357 241 85 68 chr13 715950 716244 -101156925 + L1MC5 LINE L1 7488 7786 -175 624 287 123 18 chr13 718773 719219 -101153950 - L1MC4a LINE L1 -1867 5941 5449 629 295 143 43 chr13 719284 719800 -101153369 - L1MC4a LINE L1 -992 5154 4587 1085 164 51 23 chr13 720395 720740 -101152429 - Tigger1 DNA MER2_type -8 2410 1 1270 156 6 147 chr13 721029 721375 -101151794 - AluSx SINE Alu -5 297 1 2318 141 86 5 chr13 722616 723012 -101150157 - MSTA LTR MaLR 0 428 1 1315 175 27 115 chr13 723912 724110 -101149059 - AluYb8 SINE Alu -6 312 155 2032 149 7 0 chr13 724110 724412 -101148757 - AluSx SINE Alu -8 304 1 1315 175 27 115 chr13 724412 724551 -101148618 - AluYb8 SINE Alu -163 155 5 4412 182 84 12 chr13 724920 726351 -101146818 + L1MA10 LINE L1 4783 6334 0 311 296 9 9 chr13 726823 726938 -101146231 - HAL1b LINE L1 -951 397 283 338 230 10 20 chr13 727006 727106 -101146063 - HAL1b LINE L1 -1166 182 84 418 323 37 6 chr13 727423 727587 -101145582 - L2 LINE L2 -1 3312 3144 339 274 21 0 chr13 727627 727722 -101145447 - MER58 DNA MER1_type -74 267 171 1160 179 0 72 chr13 728280 728503 -101144666 + AluJo SINE Alu 84 290 -22 412 288 28 34 chr13 728550 728727 -101144442 - L1ME4a LINE L1 -59 6062 5887 487 301 38 10 chr13 728795 729004 -101144165 - L1ME4a LINE L1 -226 5895 5681 1207 158 27 27 chr13 729035 729257 -101143912 - AluJo SINE Alu -5 307 86 3723 109 0 6 chr13 729836 730350 -101142819 + MER9 LTR ERVK 1 511 0 225 94 0 0 chr13 730427 730459 -101142710 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr13 730871 730892 -101142277 + (TC)n Simple_repeat Simple_repeat 2 22 0 288 0 0 0 chr13 730894 730926 -101142243 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 265 0 0 chr13 731262 731364 -101141805 + (TG)n Simple_repeat Simple_repeat 1 102 0 228 235 0 0 chr13 731575 731643 -101141526 + (CA)n Simple_repeat Simple_repeat 2 69 0 344 265 26 30 chr13 731812 731944 -101141225 + MIR SINE MIR 47 176 -32 386 311 68 114 chr13 732119 732557 -101140612 + L2 LINE L2 2851 3268 -4 1075 246 79 16 chr13 732903 733208 -101139961 - MLT1J1 LTR MaLR -103 343 20 185 315 96 14 chr13 733341 733414 -101139755 + L2 LINE L2 3193 3271 -1 467 134 12 0 chr13 733416 733498 -101139671 + GA-rich Low_complexity Low_complexity 2 84 0 260 328 16 0 chr13 733514 733639 -101139530 + (TGGA)n Simple_repeat Simple_repeat 2 128 0 311 155 0 14 chr13 733646 733717 -101139452 + GA-rich Low_complexity Low_complexity 3 72 0 188 67 33 0 chr13 733733 733763 -101139406 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 225 158 0 35 chr13 733789 733846 -101139323 - LTR66 LTR ERVL -152 458 404 270 0 0 0 chr13 733883 733913 -101139256 + (CA)n Simple_repeat Simple_repeat 2 31 0 359 286 71 48 chr13 735052 735220 -101137949 + MIR3 SINE MIR 20 191 -17 387 299 0 0 chr13 735276 735383 -101137786 + Charlie8 DNA MER1_type 158 264 -2153 392 255 85 9 chr13 736254 736360 -101136809 - L2 LINE L2 -23 3249 3136 913 134 0 0 chr13 736385 736512 -101136657 + AluSx SINE Alu 9 135 -177 37863 76 9 2 chr13 736513 742618 -101130551 + L1PA5 LINE L1 18 6169 0 796 191 0 0 chr13 742618 742744 -101130425 + AluSx SINE Alu 135 260 -50 216 0 0 0 chr13 742744 742768 -101130401 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 545 338 102 3 chr13 742787 743071 -101130098 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 743158 743270 -101129899 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1679 191 23 22 chr13 743271 743645 -101129524 - MLT2C1 LTR ERVL -20 444 1 340 336 8 17 chr13 744528 744769 -101128400 + L1M4 LINE L1 5122 5360 -786 269 254 55 12 chr13 744837 745002 -101128167 + (CAGA)n Simple_repeat Simple_repeat 1 172 0 357 82 0 0 chr13 745871 745920 -101127249 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 202 263 34 17 chr13 749219 749337 -101123832 + (CAGA)n Simple_repeat Simple_repeat 1 120 0 1438 193 64 0 chr13 751394 751659 -101121510 + AluJo SINE Alu 1 282 -30 353 330 85 23 chr13 751880 752056 -101121113 - L2 LINE L2 -1 3312 3126 1421 193 76 6 chr13 752066 752382 -101120787 + MER44D DNA MER2_type 2 609 0 1702 171 0 18 chr13 752699 752980 -101120189 + AluJb SINE Alu 1 276 -36 255 301 7 7 chr13 752980 753073 -101120096 + GA-rich Low_complexity Low_complexity 1 93 0 221 213 107 40 chr13 753353 753428 -101119741 + MIR SINE MIR 64 143 -119 2293 105 21 43 chr13 753438 753574 -101119595 - THE1B LTR MaLR 0 364 227 2499 81 0 7 chr13 753574 753883 -101119286 - AluY SINE Alu -4 307 1 2293 105 21 43 chr13 753883 754118 -101119051 - THE1B LTR MaLR -137 227 1 5101 104 8 1 chr13 754118 754849 -101118320 - THE1B-int LTR MaLR 0 1580 845 275 146 0 0 chr13 754849 754897 -101118272 + Alu SINE Alu 248 295 -7 196 340 118 7 chr13 754900 755044 -101118125 - L2 LINE L2 -2356 958 799 22449 125 29 17 chr13 755171 759663 -101113506 - L1P3 LINE L1 -659 5810 1244 291 71 0 0 chr13 759663 759705 -101113464 + (TTG)n Simple_repeat Simple_repeat 1 42 0 22449 125 29 17 chr13 759705 760268 -101112901 - L1P3 LINE L1 -5225 1244 689 188 200 150 50 chr13 760478 760558 -101112611 + MIR SINE MIR 46 133 -75 1028 247 80 37 chr13 762585 763022 -101110147 + L1MB7 LINE L1 4578 5033 -1113 510 251 57 28 chr13 763062 763309 -101109860 + Charlie5 DNA MER1_type 2332 2585 -27 373 283 61 11 chr13 763312 763492 -101109677 + L1MB7 LINE L1 5039 5227 -919 965 190 124 13 chr13 763752 763978 -101109191 + L1MB2 LINE L1 5921 6171 0 7544 94 21 21 chr13 765772 766779 -101106390 + LTR13 LTR ERVK 1 1007 0 1090 195 191 24 chr13 767289 767535 -101105634 - AluJo SINE Alu -15 287 1 301 200 0 0 chr13 767535 767595 -101105574 + L1MC4 LINE L1 6642 6701 -1341 303 210 0 0 chr13 767642 767704 -101105465 - L1MC4 LINE L1 -1339 6703 6642 245 287 205 23 chr13 767745 767930 -101105239 + MIR SINE MIR 23 237 -25 399 170 2 17 chr13 768510 768599 -101104570 + L1MA6 LINE L1 6196 6283 -17 549 261 151 13 chr13 768600 768911 -101104258 + Charlie7 DNA MER1_type 1997 2350 -262 2223 135 21 52 chr13 769333 769914 -101103255 + MER4A LTR ERV1 34 664 0 4610 193 37 35 chr13 772344 774125 -101099044 + L1MB3 LINE L1 4398 6181 -2 1791 167 24 0 chr13 775211 775505 -101097664 + AluSg SINE Alu 1 301 -9 342 215 0 0 chr13 775505 775584 -101097585 + G-rich Low_complexity Low_complexity 3 81 0 1011 308 173 35 chr13 775803 776755 -101096414 - L2 LINE L2 -379 2935 1852 1719 214 79 46 chr13 776833 777016 -101096153 + L1MB7 LINE L1 5222 5397 -781 1682 167 3 17 chr13 777016 777304 -101095865 + AluJb SINE Alu 22 305 -7 1719 214 79 46 chr13 777304 777760 -101095409 + L1MB7 LINE L1 5397 5884 -294 452 201 27 121 chr13 777820 777969 -101095200 + L1MB7 LINE L1 6041 6175 -9 1527 193 24 20 chr13 779848 780143 -101093026 + AluJo SINE Alu 1 296 -16 927 239 127 14 chr13 780263 780547 -101092622 + MER33 DNA MER1_type 8 323 -1 435 223 54 9 chr13 781192 781304 -101091865 - Tigger1 DNA MER2_type 0 2418 2302 * 1779 157 23 0 chr13 781302 781601 -101091568 - Tigger1 DNA MER2_type -374 2044 1739 2067 120 3 0 chr13 781601 781884 -101091285 - AluSp SINE Alu -11 302 19 4371 114 16 41 chr13 781961 782230 -101090939 - Tigger1 DNA MER2_type -670 1748 1474 2308 98 0 3 chr13 782230 782526 -101090643 - AluY SINE Alu -16 295 1 4371 114 16 41 chr13 782526 782560 -101090609 - Tigger1 DNA MER2_type -944 1474 1441 1376 196 17 33 chr13 782560 782861 -101090308 + AluJo SINE Alu 1 296 -16 4371 114 16 41 chr13 782861 783259 -101089910 - Tigger1 DNA MER2_type -977 1441 1064 1535 174 3 49 chr13 883273 883577 -100989592 + AluJo SINE Alu 17 306 -6 452 330 48 35 chr13 884574 884804 -100988365 + L1MC4a LINE L1 5342 5574 -2234 284 236 24 79 chr13 884950 885077 -100988092 + L1MC4a LINE L1 5819 5938 -1870 1550 192 0 14 chr13 885293 885585 -100987584 + AluJo SINE Alu 6 293 -19 629 170 0 0 chr13 885671 885771 -100987398 - AluSp/q SINE Alu -19 294 195 240 237 173 58 chr13 885921 886060 -100987109 - MIR SINE MIR -58 204 50 233 286 0 0 chr13 886629 886678 -100986491 + (TG)n Simple_repeat Simple_repeat 1 49 0 3898 239 26 28 chr13 888687 889884 -100983285 - L1P LINE L1 -2604 3542 2348 1974 140 0 0 chr13 889886 890178 -100982991 + AluSg SINE Alu 1 292 -18 186 256 151 101 chr13 892729 892967 -100980202 + L2 LINE L2 2026 2275 -1039 2019 132 0 0 chr13 893517 893812 -100979357 - AluSx SINE Alu -17 295 1 1755 201 36 0 chr13 895250 895579 -100977590 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 896251 896272 -100976897 + AT_rich Low_complexity Low_complexity 1 21 0 3725 129 5 52 chr13 896300 896921 -100976248 - LTR14B LTR ERVK 0 608 17 440 297 121 18 chr13 897016 897181 -100975988 - MER5A DNA MER1_type 0 189 8 265 333 0 21 chr13 897216 897309 -100975860 - MER5A DNA MER1_type -31 158 68 2289 174 48 30 chr13 897441 897941 -100975228 - LTR22 LTR ERVK 0 509 1 1527 191 0 13 chr13 898074 898372 -100974797 + AluJo SINE Alu 1 294 -18 2003 140 0 3 chr13 898374 898688 -100974481 + AluSq SINE Alu 1 313 0 509 274 161 36 chr13 899864 900087 -100973082 + MIR SINE MIR 2 252 -10 845 161 112 0 chr13 900415 900558 -100972611 - AluSc SINE Alu -16 293 135 381 244 109 0 chr13 900625 900744 -100972425 - Charlie7 DNA MER1_type -266 2346 2215 1038 107 0 0 chr13 900901 901041 -100972128 + AluSx SINE Alu 61 200 -112 605 121 0 78 chr13 901084 901164 -100972005 + AluSx SINE Alu 203 273 -39 428 0 0 19 chr13 901164 901217 -100971952 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 605 121 0 78 chr13 901217 901252 -100971917 + AluSx SINE Alu 273 309 -3 1633 156 43 7 chr13 901343 901625 -100971544 - AluJo SINE Alu -19 293 2 580 163 7 118 chr13 901649 901784 -100971385 - AluJb SINE Alu -187 125 6 1489 85 5 5 chr13 901862 902062 -100971107 + AluY SINE Alu 95 294 -17 374 234 64 26 chr13 902066 902376 -100970793 - L1MC5 LINE L1 -302 7659 7304 1893 153 0 0 chr13 902577 902877 -100970292 + AluJb SINE Alu 1 300 -12 195 129 0 0 chr13 903069 903100 -100970069 + (TATG)n Simple_repeat Simple_repeat 4 34 0 311 268 98 0 chr13 903102 903184 -100969985 - L1MC4 LINE L1 -1339 6703 6614 * 360 272 0 22 chr13 903146 903238 -100969931 + L1MC4 LINE L1 6614 6703 -1339 257 231 0 22 chr13 903240 903331 -100969838 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 338 299 23 0 chr13 903331 903418 -100969751 + L1MC4 LINE L1 6615 6703 -1339 709 231 17 103 chr13 903428 903949 -100969220 + MER115 DNA AcHobo 71 4031 0 823 216 25 6 chr13 904956 905118 -100968051 - FRAM SINE Alu -14 162 1 21 0 0 0 chr13 905512 905533 -100967636 + AT_rich Low_complexity Low_complexity 1 21 0 597 279 62 12 chr13 905819 906059 -100967110 + L2 LINE L2 2033 2284 -1030 1608 143 34 4 chr13 906085 906350 -100966819 - AluJb SINE Alu -39 273 1 1137 273 45 32 chr13 906350 907059 -100966110 - L1ME LINE L1 -4823 1257 536 812 325 30 55 chr13 907203 907735 -100965434 - L1ME LINE L1 -5539 531 13 1817 166 0 3 chr13 907946 908230 -100964939 + AluJb SINE Alu 1 304 0 190 0 0 0 chr13 908230 908251 -100964918 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 429 219 57 19 chr13 908376 908481 -100964688 + MLT1J2 LTR MaLR 3 111 -339 443 274 74 57 chr13 908543 908718 -100964451 + MLT1J2 LTR MaLR 238 415 -31 638 211 102 0 chr13 909104 909251 -100963918 + L1PA16 LINE L1 5999 6160 -6 1202 162 18 0 chr13 909497 909719 -100963450 - L1MA4 LINE L1 0 6300 6075 1057 214 7 65 chr13 909790 910098 -100963071 - L1MA10 LINE L1 -13 6321 6032 406 255 0 0 chr13 910466 910560 -100962609 - MIR SINE MIR -110 152 59 488 239 92 0 chr13 910653 910783 -100962386 - MIR SINE MIR -65 197 56 2524 44 0 0 chr13 912229 912523 -100960646 + AluY SINE Alu 1 294 -17 1786 177 3 3 chr13 912947 913252 -100959917 + AluJb SINE Alu 2 306 -6 233 279 0 15 chr13 913262 913330 -100959839 - MIR3 SINE MIR -32 176 110 304 182 76 0 chr13 913396 913462 -100959707 - MIR SINE MIR -60 148 78 1761 174 0 17 chr13 913596 913889 -100959280 - AluJo SINE Alu -9 303 16 464 291 55 21 chr13 914444 914985 -100958184 + L1MC/D LINE L1 4928 5481 -750 849 163 27 0 chr13 915008 915155 -100958014 + FAM SINE Alu 1 42 -7 998 111 0 7 chr13 915203 915338 -100957831 - AluSq/x SINE Alu -178 134 1 1800 123 93 13 chr13 915449 915759 -100957410 - MER1B DNA MER1_type -2 335 1 1118 131 0 0 chr13 916508 916668 -100956501 + FRAM SINE Alu 2 161 -15 523 187 81 8 chr13 916868 916991 -100956178 - L1MB4 LINE L1 -1 6179 6048 2382 91 0 19 chr13 917258 917576 -100955593 + AluSx SINE Alu 1 312 0 310 279 158 6 chr13 917737 917895 -100955274 - MIR SINE MIR -79 183 2 248 200 36 91 chr13 917911 918021 -100955148 - L1MB4 LINE L1 -2330 5478 5375 1680 148 7 7 chr13 918044 918314 -100954855 - AluJb SINE Alu -40 272 3 770 171 0 8 chr13 918322 918445 -100954724 - FLAM_C SINE Alu -17 126 5 22 35 0 0 chr13 919491 919520 -100953649 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 919696 919741 -100953428 + AT_rich Low_complexity Low_complexity 1 45 0 261 241 93 28 chr13 920622 920730 -100952439 - L2 LINE L2 -1 3271 3157 893 224 91 5 chr13 920975 921185 -100951984 - L1ME1 LINE L1 -11 6155 5928 210 91 0 0 chr13 921515 921548 -100951621 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 842 144 16 171 chr13 921848 922153 -100951016 + LTR49 LTR ERV1 12 269 -326 398 188 25 19 chr13 922261 922377 -100950792 + LTR49 LTR ERV1 246 485 -254 352 203 174 80 chr13 922400 922538 -100950631 + LTR48 LTR ERV1 607 757 -30 2326 216 115 36 chr13 922615 923277 -100949892 + MER21B LTR ERV1 98 811 -52 26 82 0 0 chr13 924560 924621 -100948548 + GC_rich Low_complexity Low_complexity 1 61 0 1302 80 150 0 chr13 925031 925231 -100947938 + MER30 DNA MER1_type 1 230 0 2160 121 0 10 chr13 925981 926304 -100946865 - AluSx SINE Alu 0 320 1 860 159 7 0 chr13 926416 926554 -100946615 + L1M4 LINE L1 5342 5480 -698 1574 180 32 0 chr13 926563 926841 -100946328 + AluJb SINE Alu 1 287 -25 294 273 9 59 chr13 926895 927056 -100946113 + FRAM SINE Alu 8 135 -31 2364 108 0 0 chr13 928014 928319 -100944850 - AluSq SINE Alu -8 305 1 2355 109 0 0 chr13 929246 929549 -100943620 - AluSx SINE Alu -9 303 1 496 272 63 24 chr13 931788 931994 -100941175 - MIR SINE MIR -48 214 1 207 281 0 18 chr13 931988 932045 -100941124 + MIR SINE MIR 2 57 -205 * 195 252 118 39 chr13 932493 932620 -100940549 + L2 LINE L2 1429 1565 -1749 1643 125 27 116 chr13 932749 933084 -100940085 - AluJb SINE Alu -7 305 1 196 241 0 0 chr13 933175 933229 -100939940 + MIR SINE MIR 204 257 -5 732 261 336 8 chr13 933373 934158 -100939011 + L2 LINE L2 1587 2629 -685 764 258 104 13 chr13 934230 934548 -100938621 + LTR16A LTR ERVL 104 450 0 1116 280 54 19 chr13 934572 935186 -100937983 + L2 LINE L2 2668 3313 0 1753 180 0 10 chr13 935602 935896 -100937273 - AluJb SINE Alu -21 291 1 809 136 0 23 chr13 935932 936064 -100937105 - FLAM_A SINE Alu 0 142 14 1597 179 17 10 chr13 936969 937115 -100936054 + AluJo SINE Alu 1 144 -168 2438 74 0 3 chr13 937115 937414 -100935755 + AluY SINE Alu 1 298 -13 1597 179 17 10 chr13 937414 937558 -100935611 + AluJo SINE Alu 144 293 -19 216 0 0 0 chr13 937558 937582 -100935587 + (TA)n Simple_repeat Simple_repeat 2 25 0 2108 135 10 3 chr13 938537 938834 -100934335 - AluJo SINE Alu -13 299 1 565 15 0 0 chr13 939275 939343 -100933826 - L1PA6 LINE L1 -1 6153 6086 279 36 15 0 chr13 939343 939383 -100933786 + L1PA5 LINE L1 5929 5972 -182 2428 53 3 7 chr13 939401 939705 -100933464 - AluY SINE Alu -8 303 1 2460 77 0 0 chr13 939707 940018 -100933151 - AluY SINE Alu 0 311 1 189 0 0 0 chr13 940636 940657 -100932512 + (TG)n Simple_repeat Simple_repeat 2 22 0 1573 164 6 61 chr13 940657 940830 -100932339 - AluJo SINE Alu -26 286 133 2375 72 0 3 chr13 940830 941122 -100932047 + AluY SINE Alu 1 291 -20 1573 164 6 61 chr13 941122 941249 -100931920 - AluJo SINE Alu -179 133 1 10039 119 18 3 chr13 941335 942792 -100930377 + Tigger1 DNA MER2_type 1 1478 -940 2363 107 3 0 chr13 942793 943102 -100930067 + AluSq SINE Alu 1 310 -3 632 188 58 36 chr13 943120 943258 -100929911 + FRAM SINE Alu 20 160 -16 6096 125 21 2 chr13 943258 944188 -100928981 + Tigger1 DNA MER2_type 1471 2418 0 376 325 47 0 chr13 944208 944377 -100928792 - L1ME3A LINE L1 -288 5882 5706 1433 234 6 6 chr13 944393 944705 -100928464 - AluJo SINE Alu 0 312 1 1039 118 0 0 chr13 944705 944840 -100928329 - AluSq/x SINE Alu -177 135 1 339 249 0 4 chr13 944847 944952 -100928217 - L1ME3A LINE L1 -803 5361 5259 273 280 43 11 chr13 944965 945058 -100928111 + MIR SINE MIR 47 142 -120 1744 158 0 21 chr13 945107 945386 -100927783 - AluJo SINE Alu -39 273 1 2447 77 0 0 chr13 945828 946126 -100927043 - AluY SINE Alu -13 298 1 237 263 60 30 chr13 946254 946387 -100926782 - L1ME3A LINE L1 -1082 5064 4928 296 273 10 10 chr13 946562 946661 -100926508 - L1ME3A LINE L1 -1499 4647 4549 699 186 0 0 chr13 947078 947196 -100925973 - FLAM_C SINE Alu -15 118 1 389 281 29 41 chr13 947576 947818 -100925351 + L1ME4a LINE L1 5714 5952 -169 269 111 0 0 chr13 947827 947872 -100925297 + FLAM_A SINE Alu 89 133 0 1948 131 0 39 chr13 947887 948193 -100924976 + AluSx SINE Alu 1 294 -18 2422 72 0 0 chr13 948197 948490 -100924679 + AluY SINE Alu 2 294 -17 2419 77 3 0 chr13 948497 948796 -100924373 + AluSc SINE Alu 1 300 -9 233 163 0 0 chr13 948848 948891 -100924278 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 949201 949341 -100923828 - MER63 DNA MER1_type -276 786 5 435 155 70 120 chr13 949384 949526 -100923643 + L1ME4a LINE L1 5985 6119 -2 2118 132 0 0 chr13 949895 950182 -100922987 - AluSx SINE Alu -25 287 1 3151 165 79 27 chr13 950188 950844 -100922325 - L1MB5 LINE L1 0 6174 5485 2247 117 0 0 chr13 952138 952438 -100920731 + AluSg SINE Alu 1 300 -10 206 286 62 27 chr13 952719 952831 -100920338 + L2 LINE L2 3150 3265 -7 2007 162 24 26 chr13 953023 953406 -100919763 + MLT1B LTR MaLR 1 382 -8 23 0 0 0 chr13 953696 953719 -100919450 + AT_rich Low_complexity Low_complexity 1 23 0 310 193 59 82 chr13 953841 953976 -100919193 - L1ME4a LINE L1 -48 6073 5942 561 160 0 114 chr13 954108 954239 -100918930 - FLAM_A SINE Alu -13 120 5 24 53 0 0 chr13 954473 954511 -100918658 + AT_rich Low_complexity Low_complexity 1 38 0 868 128 45 0 chr13 954549 954682 -100918487 + FLAM_C SINE Alu 3 141 -2 181 300 29 29 chr13 955241 955311 -100917858 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr13 955567 955590 -100917579 + AT_rich Low_complexity Low_complexity 1 23 0 190 207 244 0 chr13 956761 956843 -100916326 - MIR SINE MIR -71 137 36 297 0 0 0 chr13 957778 957811 -100915358 + (TG)n Simple_repeat Simple_repeat 1 33 0 260 278 145 18 chr13 958436 958580 -100914589 + MIR SINE MIR 5 142 -66 3637 57 4 13 chr13 960988 961465 -100911704 - L1PA7 LINE L1 0 6154 5682 270 299 126 32 chr13 962186 962534 -100910635 + L1ME LINE L1 5504 5884 -237 592 203 27 20 chr13 963338 963486 -100909683 - L1PA16 LINE L1 0 6166 6018 3634 172 11 18 chr13 963717 964480 -100908689 - L1MA3 LINE L1 0 6305 5549 24 32 0 0 chr13 965357 965388 -100907781 + AT_rich Low_complexity Low_complexity 1 31 0 745 171 0 0 chr13 966188 966305 -100906864 + FLAM_A SINE Alu 1 117 -16 369 333 59 26 chr13 967874 968027 -100905142 - L2 LINE L2 -215 3098 2941 187 167 48 24 chr13 969812 969854 -100903315 + MER5A DNA MER1_type 43 85 -104 * 357 189 156 11 chr13 969838 969928 -100903241 - MER5A DNA MER1_type -77 112 10 327 25 0 0 chr13 972110 972150 -100901019 + (TG)n Simple_repeat Simple_repeat 1 40 0 437 188 21 0 chr13 972647 972743 -100900426 - Charlie1 DNA MER1_type -45 2716 2619 1121 206 5 0 chr13 974215 974424 -100898745 + AluJb SINE Alu 97 306 -6 2055 121 0 0 chr13 974763 975036 -100898133 + AluSx SINE Alu 1 273 -39 494 181 0 0 chr13 975038 975121 -100898048 + AluJb SINE Alu 206 288 -24 968 189 0 0 chr13 975174 975338 -100897831 + FRAM SINE Alu 8 171 -5 3437 162 32 0 chr13 975357 976018 -100897151 + L1MB3 LINE L1 5472 6153 -30 584 190 50 25 chr13 977465 977586 -100895583 - AluJb SINE Alu -15 297 174 1121 206 5 0 chr13 977762 977971 -100895198 + AluJb SINE Alu 97 306 -6 2271 124 0 0 chr13 978310 978617 -100894552 + AluSx SINE Alu 1 307 -5 24 32 0 0 chr13 979199 979230 -100893939 + AT_rich Low_complexity Low_complexity 1 31 0 1215 108 5 5 chr13 980017 980212 -100892957 - L1MA1 LINE L1 0 6302 6108 25 31 0 0 chr13 980406 980438 -100892731 + AT_rich Low_complexity Low_complexity 1 32 0 8879 219 30 20 chr13 980447 983155 -100890014 - L1 LINE L1 -1438 5410 2675 768 158 0 0 chr13 983193 983307 -100889862 - AluJo SINE Alu -21 291 178 1997 177 92 0 chr13 983307 983697 -100889472 + MSTB LTR MaLR 1 426 0 7875 194 18 11 chr13 983769 985383 -100887786 + MSTB-int LTR MaLR 27 1651 0 1940 202 52 2 chr13 985383 985784 -100887385 + MSTB LTR MaLR 1 421 -5 790 226 11 32 chr13 985784 985974 -100887195 - AluJo SINE Alu -126 186 1 1345 239 31 14 chr13 985975 986397 -100886772 - L1 LINE L1 -4180 2669 2241 282 73 0 0 chr13 986401 986442 -100886727 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 402 21 0 0 chr13 986441 986488 -100886681 + (TA)n Simple_repeat Simple_repeat 2 48 0 269 309 45 0 chr13 987404 987514 -100885655 + L1ME LINE L1 5474 5588 -533 2547 273 114 40 chr13 988045 989484 -100883685 + L2 LINE L2 1778 3313 0 7072 23 0 1 chr13 990671 991493 -100881676 + L1PA4 LINE L1 5332 6152 -3 337 279 279 27 chr13 991784 992078 -100881091 - L2 LINE L2 -1308 2006 1639 665 269 34 19 chr13 992873 993081 -100880088 + MIR SINE MIR 6 216 -46 2264 98 7 0 chr13 993424 993720 -100879449 + AluSg SINE Alu 1 298 -12 2917 248 26 9 chr13 994143 995312 -100877857 + L1PA16 LINE L1 1361 2574 -4223 7753 246 39 20 chr13 995317 997741 -100875428 + L1PA16 LINE L1 2787 5263 -1534 1842 162 17 3 chr13 997741 998037 -100875132 - AluJb SINE Alu -12 300 1 7753 246 39 20 chr13 998037 998164 -100875005 + L1PA16 LINE L1 5263 5386 -1411 2501 184 20 2 chr13 998164 998654 -100874515 + L1PA16 LINE L1 6313 6811 -6 281 360 64 41 chr13 999179 999351 -100873818 + L2 LINE L2 2564 2739 -575 561 250 0 0 chr13 999496 999640 -100873529 - L1MA10 LINE L1 -11 6323 6180 956 177 24 141 chr13 999658 999950 -100873219 - L1ME LINE L1 -571 5595 5367 1831 167 0 0 chr13 999950 1000256 -100872913 + L1PB1 LINE L1 5831 6136 -15 956 177 24 141 chr13 1000256 1000446 -100872723 - L1ME LINE L1 -799 5367 5156 7655 26 25 21 chr13 1000452 1001479 -100871690 - L1PA4 LINE L1 -8 6147 5120 684 249 61 6 chr13 1001574 1001755 -100871414 - MER58A DNA MER1_type -32 192 2 1456 228 69 24 chr13 1001780 1002231 -100870938 - L1ME LINE L1 -1947 4199 3729 3099 158 23 11 chr13 1002241 1002815 -100870354 - L1MC1 LINE L1 -19 6314 5734 1730 189 0 16 chr13 1004592 1004904 -100868265 - AluJo SINE Alu -5 307 1 359 292 112 11 chr13 1005633 1005910 -100867259 + L1M4 LINE L1 4017 4321 -1825 229 237 171 20 chr13 1005936 1006088 -100867081 + L1M4 LINE L1 4378 4552 -1594 2741 180 61 8 chr13 1006242 1007273 -100865896 - Tigger1 DNA MER2_type 0 2418 1301 289 304 80 22 chr13 1010818 1010956 -100862213 + MER5B DNA MER1_type 1 146 -32 280 293 57 0 chr13 1011535 1011692 -100861477 - L1ME LINE L1 -2402 3744 3579 414 296 76 35 chr13 1012142 1012456 -100860713 - L1ME4a LINE L1 -284 5837 5511 209 211 0 0 chr13 1014080 1014118 -100859051 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 459 292 51 17 chr13 1017278 1017456 -100855713 - L2 LINE L2 -410 2904 2721 2106 83 54 0 chr13 1018115 1018393 -100854776 + AluSp SINE Alu 3 295 -18 1236 185 12 62 chr13 1018766 1019090 -100854079 - L1MB8 LINE L1 0 6178 5871 3457 136 31 4 chr13 1019122 1019636 -100853533 + MER1A DNA MER1_type 2 529 0 1963 167 83 0 chr13 1019636 1020004 -100853165 - MSTB LTR MaLR -23 403 5 590 174 82 10 chr13 1020004 1020139 -100853030 - L1MB8 LINE L1 -308 5876 5743 7056 185 42 91 chr13 1020427 1022486 -100850683 - L1MB8 LINE L1 -756 5390 3433 544 183 26 2 chr13 1022960 1023075 -100850094 - L1MA9 LINE L1 -26 6277 6166 647 297 12 6 chr13 1024647 1024812 -100848357 + FAM SINE Alu 1 166 -9 1577 200 0 20 chr13 1024831 1025126 -100848043 - AluJo SINE Alu -23 289 1 9506 106 16 6 chr13 1025700 1027944 -100845225 - L1PA8 LINE L1 -5 6167 3905 10919 104 10 3 chr13 1028064 1029696 -100843473 - L1P3 LINE L1 -1676 4785 3142 42148 35 27 0 chr13 1030256 1036242 -100836927 - L1PA2 LINE L1 -4 6151 3 12704 129 6 44 chr13 1036242 1037226 -100835943 - L1P3 LINE L1 -3304 3157 2137 2327 40 0 27 chr13 1037226 1037522 -100835647 + L1PA6 LINE L1 5865 6152 -2 12704 129 6 44 chr13 1037522 1039437 -100833732 - L1P3 LINE L1 -4324 2137 299 212 286 71 71 chr13 1039876 1039960 -100833209 + L2 LINE L2 3174 3257 -15 347 320 40 20 chr13 1042036 1042186 -100830983 + MIR3 SINE MIR 8 160 -48 4712 78 17 95 chr13 1043852 1044683 -100828486 - MER4E LTR ERV1 0 766 1 181 323 144 72 chr13 1045556 1045986 -100827183 + L2 LINE L2 2812 3272 0 2208 105 20 0 chr13 1046540 1046844 -100826325 + AluSg SINE Alu 1 310 0 225 0 0 0 chr13 1047175 1047200 -100825969 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1936 242 73 4 chr13 1047268 1047951 -100825218 - L1MC4 LINE L1 -149 7893 7012 2792 206 34 75 chr13 1047980 1048852 -100824317 - L1MC4 LINE L1 -4 8038 7202 2196 79 3 26 chr13 1048898 1049201 -100823968 + AluSp SINE Alu 14 309 -4 697 145 0 0 chr13 1049201 1049318 -100823851 + L1MA3 LINE L1 6145 6261 -44 414 0 0 0 chr13 1049318 1049364 -100823805 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr13 1049370 1049395 -100823774 + AT_rich Low_complexity Low_complexity 1 25 0 1131 208 5 0 chr13 1049395 1049607 -100823562 - Tigger2 DNA MER2_type -2170 548 336 22 35 0 0 chr13 1052490 1052519 -100820650 + AT_rich Low_complexity Low_complexity 1 29 0 348 264 88 26 chr13 1052692 1052961 -100820208 - L1MC/D LINE L1 -751 5395 5195 13844 188 21 6 chr13 1053477 1055190 -100817979 - L1PB1 LINE L1 -5 6862 5176 387 0 0 0 chr13 1055190 1055233 -100817936 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 13844 188 21 6 chr13 1055233 1057553 -100815616 - L1PB1 LINE L1 -1691 5176 2778 2082 154 40 5 chr13 1057548 1057970 -100815199 - L1PB1 LINE L1 -4576 2287 1851 * 5906 160 24 5 chr13 1057978 1059823 -100813346 - L1PB1 LINE L1 0 6867 4994 350 198 0 0 chr13 1060594 1060675 -100812494 + L1 LINE L1 4213 4293 -1853 9418 196 6 5 chr13 1060677 1062956 -100810213 - L1PB1 LINE L1 -1820 5042 2704 1056 101 6 0 chr13 1063268 1063436 -100809733 - L1PB1 LINE L1 -4149 2714 2546 7224 185 59 6 chr13 1063536 1065787 -100807382 - L1PB1 LINE L1 -4333 2530 1 9991 148 49 3 chr13 1065799 1067584 -100805585 - L1PBa LINE L1 -4996 1867 1 300 333 101 13 chr13 1067844 1068003 -100805166 - L1M4 LINE L1 -2470 3676 3504 402 243 20 47 chr13 1069175 1069323 -100803846 + MLT1F LTR MaLR 14 157 -410 180 77 0 0 chr13 1069396 1069422 -100803747 + (TCC)n Simple_repeat Simple_repeat 2 27 0 677 220 155 22 chr13 1069428 1069651 -100803518 + MLT1F LTR MaLR 170 481 -112 263 286 0 33 chr13 1069677 1069768 -100803401 + L1M3c LINE L1 670 757 -5906 275 274 14 0 chr13 1070092 1070165 -100803004 + L1M3c LINE L1 1453 1526 -5127 1011 225 116 6 chr13 1070220 1070686 -100802483 - L1M4 LINE L1 -2831 3315 2799 4530 141 27 5 chr13 1071048 1071834 -100801335 - L1MA3 LINE L1 -2 6303 5501 361 307 123 43 chr13 1071834 1071997 -100801172 + L1M2 LINE L1 779 954 -5895 2231 119 0 3 chr13 1072379 1072682 -100800487 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 1073117 1073140 -100800029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9352 208 32 7 chr13 1074101 1076517 -100796652 - L1PA15 LINE L1 -9 6156 3801 626 37 12 0 chr13 1076517 1076598 -100796571 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 9352 208 32 7 chr13 1076598 1077170 -100795999 - L1PA15 LINE L1 -2364 3801 3075 2354 88 3 0 chr13 1077170 1077466 -100795703 - AluSp SINE Alu -1 312 16 9352 208 32 7 chr13 1077466 1077834 -100795335 - L1PA15 LINE L1 -3090 3075 2718 873 130 0 0 chr13 1077836 1077951 -100795218 - AluSq/x SINE Alu -196 117 3 472 274 43 37 chr13 1078104 1078268 -100794901 - L2 LINE L2 -1162 2152 1988 1863 109 76 0 chr13 1078304 1078579 -100794590 - AluSq SINE Alu -17 296 1 1680 160 34 10 chr13 1078623 1078916 -100794253 - AluJb SINE Alu -12 300 1 1896 126 41 0 chr13 1079127 1079398 -100793771 + AluSx SINE Alu 1 282 -30 2348 108 0 13 chr13 1079486 1079802 -100793367 + AluSq SINE Alu 1 312 -1 1444 168 34 48 chr13 1080365 1080586 -100792583 + AluJb SINE Alu 1 219 -93 2342 101 7 0 chr13 1080586 1080893 -100792276 - AluSq SINE Alu -4 309 1 1444 168 34 48 chr13 1080893 1080963 -100792206 + AluJb SINE Alu 219 288 -24 400 284 0 0 chr13 1081019 1081107 -100792062 + AluJ/FLAM SINE Alu 3 90 -222 296 265 114 38 chr13 1081222 1081354 -100791815 - L2 LINE L2 0 3313 3172 194 323 62 21 chr13 1081560 1081656 -100791513 + MIR SINE MIR 12 111 -151 2202 106 7 0 chr13 1082190 1082482 -100790687 + AluSp SINE Alu 2 295 -18 279 203 0 0 chr13 1082774 1082833 -100790336 + (TA)n Simple_repeat Simple_repeat 2 60 0 1173 137 0 12 chr13 1082833 1083001 -100790168 - AluSx SINE Alu -24 286 121 1195 122 0 0 chr13 1083471 1083643 -100789526 + AluSg/x SINE Alu 131 302 -7 2092 130 3 3 chr13 1083732 1084025 -100789144 - AluSx SINE Alu -19 293 1 963 143 0 0 chr13 1084029 1084162 -100789007 - AluSx SINE Alu -179 133 1 211 333 20 50 chr13 1084187 1084286 -100788883 - MER5A DNA MER1_type 0 189 94 519 161 43 0 chr13 1084854 1084947 -100788222 - AluSg/x SINE Alu -9 301 205 1887 178 0 3 chr13 1085084 1085377 -100787792 + AluJo SINE Alu 1 292 -20 326 272 95 44 chr13 1085426 1085584 -100787585 - L1MC/D LINE L1 -1973 5835 5670 2312 88 7 0 chr13 1085586 1085880 -100787289 - AluSx SINE Alu -16 296 1 1859 122 89 0 chr13 1085996 1086267 -100786902 - AluSx SINE Alu -17 295 1 1758 128 0 57 chr13 1086276 1086573 -100786596 - AluSg SINE Alu -6 304 25 850 142 0 0 chr13 1086600 1086741 -100786428 + AluSc SINE Alu 166 306 -3 1735 86 0 9 chr13 1086897 1087119 -100786050 + AluSc SINE Alu 73 292 -17 198 0 0 0 chr13 1087403 1087425 -100785744 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1809 113 12 4 chr13 1087425 1087682 -100785487 - AluSx SINE Alu -29 283 25 764 207 0 7 chr13 1088145 1088290 -100784879 + FRAM SINE Alu 20 163 -13 2303 106 0 0 chr13 1088306 1088608 -100784561 - AluSp SINE Alu -11 302 1 732 171 16 0 chr13 1088608 1088731 -100784438 - AluJb SINE Alu -175 137 13 26 0 0 0 chr13 1088759 1088785 -100784384 + AT_rich Low_complexity Low_complexity 1 26 0 349 140 0 0 chr13 1088867 1088924 -100784245 - AluS SINE Alu -244 57 1 2004 153 0 0 chr13 1088969 1089256 -100783913 - AluSx SINE Alu -25 287 1 21437 61 1 0 chr13 1089523 1092357 -100780812 + L1P LINE L1 1 2835 -3311 31693 41 2 2 chr13 1092364 1096413 -100776756 + L1P LINE L1 5 4052 -2094 678 149 0 18 chr13 1096516 1096630 -100776539 + FLAM_A SINE Alu 5 116 -17 2308 93 0 3 chr13 1096635 1096935 -100776234 - AluY SINE Alu -12 299 1 620 165 26 9 chr13 1097345 1097460 -100775709 + FLAM_A SINE Alu 1 117 -16 4464 179 37 5 chr13 1097529 1098403 -100774766 - L1MC1 LINE L1 -17 6316 5415 539 311 7 0 chr13 1098774 1098925 -100774244 - FRAM SINE Alu -24 152 1 306 0 0 0 chr13 1098927 1098961 -100774208 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1519 122 0 5 chr13 1098961 1099175 -100773994 - AluSg/x SINE Alu -29 281 69 1562 185 7 14 chr13 1099175 1099451 -100773718 + AluJo SINE Alu 17 290 -22 21 71 0 0 chr13 1100414 1100456 -100772713 + AT_rich Low_complexity Low_complexity 1 42 0 1703 168 18 3 chr13 1101117 1101403 -100771766 - AluJb SINE Alu -12 300 11 2341 72 0 7 chr13 1104125 1104429 -100768740 + AluY SINE Alu 1 302 -9 2203 117 0 0 chr13 1105052 1105361 -100767808 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 1105714 1105742 -100767427 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 1105820 1105850 -100767319 + AT_rich Low_complexity Low_complexity 1 30 0 245 271 37 19 chr13 1106056 1106163 -100767006 - MER104 DNA Tc2 -61 119 11 1396 51 0 29 chr13 1106874 1107049 -100766120 + AluY SINE Alu 124 293 -18 207 88 0 0 chr13 1108623 1108657 -100764512 + (T)n Simple_repeat Simple_repeat 1 34 0 875 153 26 37 chr13 1109960 1110149 -100763020 - MLT1B LTR MaLR -203 187 1 2299 117 0 0 chr13 1110430 1110737 -100762432 + AluSx SINE Alu 6 312 0 1461 75 0 0 chr13 1110847 1111021 -100762148 - AluSq SINE Alu -6 307 134 1937 110 0 53 chr13 1111026 1111368 -100761801 - AluSx SINE Alu 0 326 1 1956 236 75 10 chr13 1111417 1112119 -100761050 + L1ME LINE L1 3124 3871 -2275 1764 136 48 0 chr13 1112208 1112480 -100760689 - AluJb SINE Alu -27 285 1 2102 204 68 71 chr13 1112480 1112716 -100760453 + L1ME LINE L1 4571 4806 -1360 1934 133 9 59 chr13 1112716 1113040 -100760129 + AluJb SINE Alu 1 308 -4 2102 204 68 71 chr13 1113040 1113171 -100759998 + L1ME LINE L1 4806 4936 -1230 1780 155 20 30 chr13 1113171 1113475 -100759694 - AluSx SINE Alu -11 301 1 2102 204 68 71 chr13 1113475 1113487 -100759682 + L1ME LINE L1 4936 4947 -1219 2141 113 17 0 chr13 1113487 1113778 -100759391 - AluSx SINE Alu -16 296 1 2102 204 68 71 chr13 1113778 1113809 -100759360 + L1ME LINE L1 4947 4977 -1189 2295 87 0 14 chr13 1113809 1114123 -100759046 - AluSq SINE Alu 0 310 1 2102 204 68 71 chr13 1114123 1114640 -100758529 + L1ME LINE L1 4977 5490 -676 2205 106 0 34 chr13 1114640 1114773 -100758396 + AluSc SINE Alu 1 137 -172 1870 119 87 0 chr13 1114773 1115050 -100758119 + AluSg SINE Alu 1 301 -9 2205 106 0 34 chr13 1115050 1115236 -100757933 + AluSc SINE Alu 137 309 0 420 178 57 18 chr13 1115236 1115362 -100757807 + L1ME LINE L1 5678 5813 -371 * 534 241 37 25 chr13 1115360 1115410 -100757759 - L1M4 LINE L1 -2474 3672 3624 2156 126 24 0 chr13 1115410 1115704 -100757465 - AluSx SINE Alu -11 301 1 534 241 37 25 chr13 1115704 1115873 -100757296 - L1M4 LINE L1 -2522 3624 3455 272 263 149 18 chr13 1115963 1116077 -100757092 + MLT1K LTR MaLR 87 230 -358 1830 172 7 0 chr13 1116230 1116520 -100756649 - AluJb SINE Alu -20 292 1 2879 175 98 73 chr13 1116520 1116610 -100756559 - L1MDa LINE L1 -4577 1963 1877 2519 79 3 0 chr13 1116610 1116913 -100756256 - AluSg SINE Alu -6 304 1 2879 175 98 73 chr13 1116913 1117192 -100755977 - L1MDa LINE L1 -4663 1877 1606 432 0 0 0 chr13 1117192 1117240 -100755929 + (TA)n Simple_repeat Simple_repeat 2 49 0 2050 104 0 0 chr13 1117241 1117501 -100755668 - AluSg SINE Alu -16 294 35 2879 175 98 73 chr13 1117501 1117673 -100755496 - L1MDa LINE L1 -4934 1606 1440 2357 99 0 0 chr13 1117673 1117967 -100755202 - AluSc SINE Alu -15 294 1 2879 175 98 73 chr13 1117967 1117988 -100755181 - L1MDa LINE L1 -5100 1440 1421 2151 124 0 13 chr13 1117988 1118286 -100754883 - AluSx SINE Alu -18 294 1 2879 175 98 73 chr13 1118286 1118713 -100754456 - L1MDa LINE L1 -5119 1421 945 380 71 18 0 chr13 1119078 1119134 -100754035 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 200 328 0 0 chr13 1119134 1119195 -100753974 - L2 LINE L2 -9 3263 3203 266 186 29 0 chr13 1119359 1119429 -100753740 + GA-rich Low_complexity Low_complexity 3 74 0 1804 162 154 0 chr13 1120546 1120917 -100752252 - MSTA LTR MaLR 0 428 1 350 153 0 71 chr13 1120917 1121002 -100752167 - MSTA-int LTR MaLR 0 1580 1502 2319 88 0 10 chr13 1121002 1121309 -100751860 - AluY SINE Alu -7 304 1 2671 43 0 7 chr13 1121476 1121778 -100751391 - AluY SINE Alu -11 300 1 324 0 0 0 chr13 1122504 1122540 -100750629 + (CA)n Simple_repeat Simple_repeat 2 37 0 700 196 0 14 chr13 1122560 1122703 -100750466 + FLAM_C SINE Alu 3 143 0 334 302 100 4 chr13 1122710 1122904 -100750265 + HAL1 LINE L1 1105 3200 -1203 348 153 0 112 chr13 1124240 1124338 -100748831 + L1ME4a LINE L1 6035 6121 0 1313 176 179 3 chr13 1124344 1124640 -100748529 + MER7A DNA MER2_type 1 346 0 1136 191 120 32 chr13 1124717 1125058 -100748111 + MLT1A2 LTR MaLR 2 372 -2 536 197 0 16 chr13 1125474 1125601 -100747568 + FLAM_A SINE Alu 17 141 -1 1218 151 82 0 chr13 1125734 1125966 -100747203 + LTR23 LTR ERV1 2 252 -185 411 178 0 0 chr13 1125978 1126051 -100747118 + FLAM SINE Alu 46 118 -15 892 91 57 62 chr13 1126057 1126197 -100746972 + LTR23 LTR ERV1 245 385 -52 1962 132 0 55 chr13 1126197 1126523 -100746646 - AluSx SINE Alu -4 308 1 892 91 57 62 chr13 1126523 1126558 -100746611 + LTR23 LTR ERV1 385 419 -18 1879 82 71 0 chr13 1126559 1126841 -100746328 - AluSx SINE Alu 0 311 12 251 373 8 0 chr13 1127801 1127927 -100745242 - Charlie1 DNA MER1_type -2 2759 2633 1373 186 12 0 chr13 1127928 1128181 -100744988 + AluJo SINE Alu 41 296 -16 1540 156 62 28 chr13 1128259 1128443 -100744726 - AluJb SINE Alu -13 299 100 2217 98 21 0 chr13 1128443 1128729 -100744440 + AluY SINE Alu 1 292 -19 1540 156 62 28 chr13 1128729 1128833 -100744336 - AluJb SINE Alu -212 100 1 1034 276 60 10 chr13 1128836 1129234 -100743935 - LTR33 LTR ERVL -94 427 10 27 0 0 0 chr13 1129583 1129610 -100743559 + AT_rich Low_complexity Low_complexity 1 27 0 2158 136 3 0 chr13 1131092 1131394 -100741775 + AluSx SINE Alu 1 303 -9 1964 127 99 0 chr13 1132482 1132766 -100740403 - AluSx SINE Alu 0 312 1 1690 185 12 0 chr13 1132847 1133101 -100740068 - AluSx SINE Alu -55 257 1 396 171 14 0 chr13 1133104 1133174 -100739995 - AluJ/FRAM SINE Alu -5 297 227 2111 128 3 0 chr13 1133199 1133496 -100739673 + AluSx SINE Alu 5 302 -10 413 273 101 22 chr13 1133496 1133635 -100739534 - MER58A DNA MER1_type -33 191 42 2345 66 0 14 chr13 1133956 1134271 -100738898 - AluY SINE Alu 0 311 1 1554 176 54 7 chr13 1134271 1134550 -100738619 - AluJb SINE Alu -17 295 4 590 160 0 0 chr13 1134805 1134905 -100738264 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr13 1136173 1136194 -100736975 + AT_rich Low_complexity Low_complexity 1 21 0 488 234 64 28 chr13 1137455 1137596 -100735573 + LTR42 LTR ERVL 1 146 -349 495 152 0 0 chr13 1137596 1137675 -100735494 + AluJb SINE Alu 210 288 -24 244 131 82 0 chr13 1137686 1137747 -100735422 + T-rich Low_complexity Low_complexity 4 69 0 204 288 0 0 chr13 1139859 1139932 -100733237 + T-rich Low_complexity Low_complexity 1 73 0 205 111 74 0 chr13 1139938 1139992 -100733177 + (TA)n Simple_repeat Simple_repeat 1 58 0 2107 120 0 0 chr13 1139992 1140266 -100732903 - AluSx SINE Alu -26 286 13 1279 167 94 45 chr13 1140287 1140575 -100732594 - AluJo SINE Alu -10 302 1 2092 139 7 0 chr13 1140581 1140882 -100732287 - AluSx SINE Alu -9 303 1 799 199 165 79 chr13 1140892 1141158 -100732011 - AluJo SINE Alu -12 290 2 1248 296 60 46 chr13 1141162 1141232 -100731937 - L1MC4 LINE L1 0 8042 7974 1788 195 10 3 chr13 1141232 1141530 -100731639 + AluJo SINE Alu 7 306 -6 1248 296 60 46 chr13 1141530 1142176 -100730993 - L1MC4 LINE L1 -68 7974 7316 1705 186 28 3 chr13 1142199 1142490 -100730679 + AluSx SINE Alu 1 298 -14 1145 184 87 5 chr13 1142502 1142709 -100730460 + AluJo SINE Alu 88 311 -1 711 200 0 0 chr13 1142712 1142842 -100730327 - AluJo/FLAM SINE Alu -172 130 1 659 256 45 76 chr13 1142843 1143132 -100730037 - L1MC4 LINE L1 -823 7219 6940 2335 111 3 0 chr13 1143326 1143633 -100729536 + AluSx SINE Alu 5 312 0 1941 130 23 27 chr13 1144502 1144649 -100728520 - AluSx SINE Alu -12 300 154 5738 136 27 32 chr13 1144649 1145726 -100727443 + MER11C LTR ERVK 1 1071 0 1941 130 23 27 chr13 1145726 1145879 -100727290 - AluSx SINE Alu -158 154 1 760 118 30 7 chr13 1145902 1146037 -100727132 - L1MB2 LINE L1 -4 6167 6030 663 148 0 33 chr13 1146059 1146181 -100726988 + FLAM_C SINE Alu 16 133 -10 1152 193 23 42 chr13 1146199 1146464 -100726705 - L1MB2 LINE L1 -188 5995 5736 1624 197 38 0 chr13 1146464 1146754 -100726415 - AluJo SINE Alu -8 304 4 1098 256 37 8 chr13 1146758 1147109 -100726060 - L1MB2 LINE L1 -941 5205 4845 240 258 62 31 chr13 1148178 1148275 -100724894 + MER5A DNA MER1_type 8 107 -82 2157 141 0 0 chr13 1151732 1152030 -100721139 - AluSx SINE Alu -9 303 6 1862 167 0 13 chr13 1152101 1152401 -100720768 + AluJo SINE Alu 1 296 -16 1507 216 7 7 chr13 1152976 1153268 -100719901 - AluJo SINE Alu -18 294 3 268 308 10 0 chr13 1154285 1154389 -100718780 + MIR SINE MIR 61 165 -97 505 179 109 98 chr13 1159478 1159567 -100713602 - L1MB8 LINE L1 -37 6141 6054 1908 162 20 0 chr13 1159567 1159863 -100713306 - AluSx SINE Alu -8 304 3 505 179 109 98 chr13 1159863 1159957 -100713212 - L1MB8 LINE L1 -124 6054 5956 1673 233 55 37 chr13 1159957 1160446 -100712723 + MLT1D LTR MaLR 1 498 -7 2063 198 40 106 chr13 1160452 1161391 -100711778 + MLT1D-int LTR MaLR 2 875 -496 3216 168 58 37 chr13 1161568 1161608 -100711561 - L1MB8 LINE L1 -205 5973 5935 2051 134 3 0 chr13 1161608 1161906 -100711263 - AluSg SINE Alu -11 299 1 3216 168 58 37 chr13 1161906 1162313 -100710856 - L1MB8 LINE L1 -243 5935 5538 1537 166 68 7 chr13 1162313 1162591 -100710578 + AluSx SINE Alu 2 296 -16 3216 168 58 37 chr13 1162591 1163113 -100710056 - L1MB8 LINE L1 -640 5538 4981 2166 111 0 20 chr13 1163255 1163552 -100709617 + AluSg SINE Alu 5 295 -15 507 138 0 0 chr13 1163990 1164070 -100709099 + FLAM_C SINE Alu 64 143 0 1169 180 28 14 chr13 1164553 1164770 -100708399 - AluJo SINE Alu -11 301 82 2567 47 0 7 chr13 1165111 1165410 -100707759 - AluY SINE Alu -14 297 1 1726 156 10 34 chr13 1165475 1165770 -100707399 + AluJb SINE Alu 1 288 -24 1635 154 18 18 chr13 1165802 1166088 -100707081 + AluJo SINE Alu 14 299 -13 435 131 0 0 chr13 1166195 1166256 -100706913 - U6 snRNA snRNA -46 61 1 283 298 63 63 chr13 1166557 1166873 -100706296 + L2 LINE L2 1695 2010 -1304 892 249 139 79 chr13 1166997 1167059 -100706110 - L2 LINE L2 0 3313 3256 791 190 0 29 chr13 1167059 1167196 -100705973 + FLAM_C SINE Alu 1 133 0 892 249 139 79 chr13 1167196 1167395 -100705774 - L2 LINE L2 -57 3256 3070 1290 201 129 8 chr13 1167395 1167658 -100705511 - AluJo SINE Alu -7 295 1 1653 183 3 29 chr13 1167659 1167965 -100705204 - AluJo SINE Alu -14 298 1 892 249 139 79 chr13 1167965 1168181 -100704988 - L2 LINE L2 -242 3071 2804 697 291 25 42 chr13 1168666 1168951 -100704218 - L2 LINE L2 -757 2557 2278 513 154 0 0 chr13 1169118 1169196 -100703973 - MADE1 DNA Mariner 0 80 3 1743 174 14 0 chr13 1170135 1170428 -100702741 + AluJb SINE Alu 1 297 -15 2109 117 17 10 chr13 1170432 1170731 -100702438 + AluSq SINE Alu 1 301 -12 2235 116 0 16 chr13 1171897 1172208 -100700961 + AluSx SINE Alu 1 306 -6 327 179 43 0 chr13 1172208 1172348 -100700821 + (TA)n Simple_repeat Simple_repeat 1 146 0 2159 114 0 0 chr13 1172777 1173058 -100700111 - AluSx SINE Alu -15 297 17 1654 164 32 0 chr13 1173779 1174059 -100699110 + AluJo SINE Alu 1 289 -23 900 187 94 0 chr13 1174141 1174312 -100698857 - MER5A DNA MER1_type 0 189 3 309 225 162 42 chr13 1174558 1174608 -100698561 + L1MC5 LINE L1 7609 7652 -309 1806 155 7 0 chr13 1174608 1174879 -100698290 + AluSx SINE Alu 6 278 -34 309 225 162 42 chr13 1174879 1175019 -100698150 + L1MC5 LINE L1 7652 7822 -139 1101 147 17 6 chr13 1175020 1175197 -100697972 + AluSg/x SINE Alu 127 305 -7 1538 223 0 0 chr13 1175203 1175494 -100697675 + AluJb SINE Alu 3 293 -19 2116 116 10 3 chr13 1175548 1175840 -100697329 + AluSq SINE Alu 1 294 -19 1981 161 0 3 chr13 1175882 1176187 -100696982 - AluSx SINE Alu -8 304 1 315 336 212 12 chr13 1176239 1176498 -100696671 - L3 LINE CR1 -72 1505 1195 2009 156 0 0 chr13 1176952 1177247 -100695922 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr13 1178235 1178259 -100694910 + AT_rich Low_complexity Low_complexity 1 24 0 607 280 104 45 chr13 1178427 1178763 -100694406 + L2 LINE L2 2077 2432 -882 1630 135 21 77 chr13 1178863 1179190 -100693979 + AluJb SINE Alu 1 309 -3 273 356 48 34 chr13 1179232 1179440 -100693729 - L2 LINE L2 -76 3196 2986 1794 164 20 0 chr13 1179748 1180040 -100693129 - AluJo SINE Alu -14 298 1 21 0 0 0 chr13 1180914 1180935 -100692234 + AT_rich Low_complexity Low_complexity 1 21 0 657 151 0 0 chr13 1181507 1181600 -100691569 + AluJ/FLAM SINE Alu 2 94 -218 291 157 0 0 chr13 1181636 1181687 -100691482 + (CA)n Simple_repeat Simple_repeat 2 52 0 1881 164 0 3 chr13 1181695 1181987 -100691182 - AluSx SINE Alu -21 291 1 895 169 48 6 chr13 1182003 1182169 -100691000 + FRAM SINE Alu 1 165 -11 234 0 0 0 chr13 1232385 1232411 -100640758 + (CCA)n Simple_repeat Simple_repeat 1 26 0 830 139 16 0 chr13 1232467 1232596 -100640573 - AluJb SINE Alu -181 131 1 488 208 47 0 chr13 1232597 1232726 -100640443 + L1M4 LINE L1 4054 4188 -1958 1622 142 67 8 chr13 1232749 1233016 -100640153 + AluSq SINE Alu 3 285 -28 189 0 0 0 chr13 1233025 1233046 -100640123 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 999 168 12 6 chr13 1233046 1233213 -100639956 + FRAM SINE Alu 2 169 -7 23 33 0 0 chr13 1233351 1233381 -100639788 + AT_rich Low_complexity Low_complexity 1 30 0 2132 114 0 7 chr13 1233390 1233687 -100639482 + AluSx SINE Alu 1 295 -17 1996 82 0 0 chr13 1233921 1234165 -100639004 + AluSx SINE Alu 56 299 -13 2015 113 0 3 chr13 1234997 1235279 -100637890 + AluSx SINE Alu 1 281 -31 518 83 0 0 chr13 1235353 1235425 -100637744 - LTR5 LTR ERVK 0 969 898 1871 157 10 0 chr13 1236136 1236429 -100636740 - AluSx SINE Alu -16 296 1 189 0 0 0 chr13 1238007 1238028 -100635141 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 2301 93 0 0 chr13 1239454 1239744 -100633425 + AluSg SINE Alu 3 292 -18 901 157 6 35 chr13 1240161 1240333 -100632836 - AluJb SINE Alu 0 312 146 26 30 0 0 chr13 1240341 1240374 -100632795 + AT_rich Low_complexity Low_complexity 1 33 0 2287 307 42 22 chr13 1240530 1241827 -100631342 - L1M2c LINE L1 -5294 1495 752 1482 158 8 15 chr13 1241927 1242186 -100630983 + L1PA15 LINE L1 5905 6161 -4 394 244 0 76 chr13 1242585 1242716 -100630453 - MIR SINE MIR -55 207 87 654 223 25 69 chr13 1242787 1242989 -100630180 - AluSg/x SINE Alu 0 312 120 396 0 0 0 chr13 1243507 1243551 -100629618 + (TG)n Simple_repeat Simple_repeat 2 45 0 1342 191 8 23 chr13 1243607 1243869 -100629300 + AluJb SINE Alu 32 289 -23 7360 29 2 4 chr13 1244401 1245403 -100627766 + L1PA2 LINE L1 5111 6113 -42 188 111 28 0 chr13 1245664 1245700 -100627469 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1540 212 0 3 chr13 1246617 1246923 -100626246 + AluSq SINE Alu 1 305 -8 11810 75 3 3 chr13 1247079 1248670 -100624499 + L1P LINE L1 3813 5403 -743 1836 110 92 4 chr13 1251160 1251433 -100621736 + AluSg SINE Alu 1 297 -13 10596 37 1 0 chr13 1251979 1253261 -100619908 + L1P LINE L1 2827 4109 -2037 2153 120 0 17 chr13 1253562 1253862 -100619307 - AluSx SINE Alu -17 295 1 1847 172 3 0 chr13 1254649 1254939 -100618230 + AluJo SINE Alu 1 291 -21 20152 159 104 39 chr13 1255374 1259763 -100613406 + L1P LINE L1 1 4673 -1473 1021 108 6 6 chr13 1261300 1261466 -100611703 + L1MA6 LINE L1 6129 6294 -6 1330 190 42 13 chr13 1261473 1261793 -100611376 + L1ME LINE L1 5269 5599 -567 1399 264 60 9 chr13 1261799 1262234 -100610935 + L1MCa LINE L1 22 478 -5948 319 192 20 50 chr13 1262251 1262350 -100610819 + L1MCa LINE L1 443 538 -5888 3772 118 5 0 chr13 1262588 1263180 -100609989 + Tigger1 DNA MER2_type 588 1182 -1236 5311 238 34 28 chr13 1263181 1264704 -100608465 + L1M2c LINE L1 14 1380 -5409 21815 48 45 3 chr13 1264804 1267756 -100605413 - L1P LINE L1 -3070 3076 1 2113 112 3 0 chr13 1268377 1268702 -100604467 + AluSg SINE Alu 1 326 0 203 185 0 19 chr13 1268865 1268919 -100604250 + (CATA)n Simple_repeat Simple_repeat 2 54 0 460 219 0 0 chr13 1269837 1269919 -100603250 + AluS SINE Alu 1 82 -230 1378 115 0 0 chr13 1270019 1270193 -100602976 + AluSp SINE Alu 105 278 -35 2063 191 23 25 chr13 1270217 1270421 -100602748 + L1M4 LINE L1 4650 4853 -1293 2255 129 0 0 chr13 1270421 1270724 -100602445 - AluSx SINE Alu -9 303 1 2063 191 23 25 chr13 1270724 1271036 -100602133 + L1M4 LINE L1 4853 5165 -981 865 169 0 0 chr13 1271054 1271184 -100601985 + AluJb SINE Alu 153 282 -30 23 0 0 53 chr13 1271190 1271205 -100601964 + AT_rich Low_complexity Low_complexity 1 15 -21 1778 117 98 0 chr13 1271205 1271469 -100601700 + AluSx SINE Alu 1 290 -22 23 0 0 53 chr13 1271469 1271491 -100601678 + AT_rich Low_complexity Low_complexity 15 36 0 2173 110 7 20 chr13 1271547 1271847 -100601322 - AluSx SINE Alu -16 296 1 1817 183 7 3 chr13 1272148 1272438 -100600731 + AluJo SINE Alu 1 291 -21 377 249 97 48 chr13 1272487 1272652 -100600517 - L1MC4a LINE L1 -1973 5835 5663 2314 91 7 0 chr13 1272653 1272951 -100600218 - AluSp SINE Alu -13 300 1 1798 127 90 0 chr13 1273069 1273336 -100599833 - AluSx SINE Alu -21 291 1 27 29 0 0 chr13 1273343 1273377 -100599792 + AT_rich Low_complexity Low_complexity 1 34 0 1501 131 0 0 chr13 1273490 1273696 -100599473 - AluSg SINE Alu -90 220 15 1032 81 0 0 chr13 1273698 1273834 -100599335 + AluSc SINE Alu 171 306 -3 1757 87 0 4 chr13 1273982 1274212 -100598957 + AluY SINE Alu 70 298 -13 1772 131 8 4 chr13 1274512 1274772 -100598397 - AluSx SINE Alu -27 285 25 2385 101 0 0 chr13 1274969 1275276 -100597893 + AluSg SINE Alu 1 307 -3 722 180 0 8 chr13 1275550 1275678 -100597491 + FRAM SINE Alu 20 146 -30 2279 85 3 7 chr13 1276312 1276607 -100596562 - AluSg SINE Alu -16 294 1 22 35 0 0 chr13 1276960 1276989 -100596180 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 1277072 1277099 -100596070 + AT_rich Low_complexity Low_complexity 1 27 0 275 252 37 19 chr13 1277300 1277407 -100595762 - MER104 DNA Tc2 -61 119 11 23 78 0 0 chr13 1281036 1281087 -100592082 + AT_rich Low_complexity Low_complexity 1 51 0 317 169 15 15 chr13 1282549 1282614 -100590555 + AluJo SINE Alu 71 135 -167 180 77 0 0 chr13 1283495 1283521 -100589648 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 235 279 23 35 chr13 1284353 1284439 -100588730 - L2 LINE L2 0 3313 3229 766 220 57 17 chr13 1284489 1284666 -100588503 - MER5A DNA MER1_type -1 188 5 480 154 13 0 chr13 1285371 1285449 -100587720 - AluJ/FLAM SINE Alu -233 79 1 643 263 83 4 chr13 1285475 1285703 -100587466 + Charlie1 DNA MER1_type 2275 2520 -241 267 206 99 84 chr13 1285774 1285905 -100587264 + Charlie1 DNA MER1_type 2623 2755 -6 810 161 27 0 chr13 1286116 1286265 -100586904 + MER46B DNA MER2_type 26 53 -183 683 203 16 0 chr13 1286269 1286392 -100586777 + FLAM_C SINE Alu 2 126 -7 2300 70 0 3 chr13 1286411 1286697 -100586472 + AluY SINE Alu 26 310 -1 1105 150 0 5 chr13 1286701 1286888 -100586281 + MER46B DNA MER2_type 48 233 -3 861 121 0 0 chr13 1287562 1287686 -100585483 + AluSq/x SINE Alu 1 124 -189 238 146 0 0 chr13 1287686 1287734 -100585435 + Alu SINE Alu 252 299 0 1928 130 10 30 chr13 1287938 1288078 -100585091 + AluSx SINE Alu 1 142 -170 2131 125 3 3 chr13 1288078 1288383 -100584786 + AluSx SINE Alu 1 305 -7 1928 130 10 30 chr13 1288383 1288542 -100584627 + AluSx SINE Alu 142 294 -18 692 257 7 0 chr13 1288552 1288704 -100584465 + FRAM SINE Alu 1 153 -23 4414 176 40 5 chr13 1289062 1289933 -100583236 + L1MC1 LINE L1 5415 6316 -17 22 0 0 0 chr13 1289985 1290007 -100583162 + AT_rich Low_complexity Low_complexity 1 22 0 556 159 28 9 chr13 1290013 1290120 -100583049 - FLAM_A SINE Alu -33 109 1 694 160 0 17 chr13 1290512 1290631 -100582538 - FLAM_A SINE Alu -12 121 5 25 31 0 0 chr13 1291929 1291961 -100581208 + AT_rich Low_complexity Low_complexity 1 32 0 1684 164 14 24 chr13 1292867 1293159 -100580010 + AluJo SINE Alu 1 289 -23 2247 119 0 0 chr13 1293164 1293474 -100579695 + AluSq SINE Alu 1 310 -3 455 134 15 0 chr13 1293480 1293547 -100579622 + AluS SINE Alu 1 68 -245 428 251 48 24 chr13 1293649 1293816 -100579353 - Charlie1a DNA MER1_type -579 876 706 * 1025 274 80 56 chr13 1293810 1294350 -100578819 - Charlie1a DNA MER1_type -902 553 1 186 43 0 0 chr13 1294556 1294579 -100578590 + (T)n Simple_repeat Simple_repeat 1 23 0 548 211 18 0 chr13 1294683 1294792 -100578377 + MIR SINE MIR 64 174 -88 2023 119 0 45 chr13 1296267 1296459 -100576710 - AluSq SINE Alu -17 296 122 2453 80 0 6 chr13 1296459 1296770 -100576399 - AluY SINE Alu -2 309 1 2023 119 0 45 chr13 1296770 1296887 -100576282 - AluSq SINE Alu -191 122 1 1759 168 7 10 chr13 1296984 1297282 -100575887 + AluJo SINE Alu 1 297 -15 2143 98 21 3 chr13 1298297 1298583 -100574586 + AluSg SINE Alu 1 291 -19 423 127 0 0 chr13 1298591 1298662 -100574507 - MER51-int LTR ERV1 -4616 3200 3130 881 99 106 7 chr13 1298689 1298840 -100574329 - MER51B LTR ERV1 0 377 212 2127 113 7 3 chr13 1298846 1299137 -100574032 - AluSx SINE Alu -20 292 1 493 278 40 30 chr13 1299208 1299452 -100573717 - L2 LINE L2 -1011 2303 1988 2239 112 7 0 chr13 1299489 1299784 -100573385 - AluSq SINE Alu -16 297 1 1831 175 0 9 chr13 1299826 1300141 -100573028 - AluJb SINE Alu 0 312 1 2365 52 45 0 chr13 1300352 1300638 -100572531 + AluSx SINE Alu 1 299 -13 2285 106 6 3 chr13 1300706 1301018 -100572151 + AluSq SINE Alu 1 313 0 23 0 0 0 chr13 1301108 1301131 -100572038 + AT_rich Low_complexity Low_complexity 1 23 0 1348 170 48 65 chr13 1301562 1301788 -100571381 + AluJb SINE Alu 1 222 -90 2148 116 7 7 chr13 1301788 1302091 -100571078 - AluSq SINE Alu -10 303 1 1348 170 48 65 chr13 1302091 1302158 -100571011 + AluJb SINE Alu 222 289 -23 843 142 0 22 chr13 1302375 1302509 -100570660 - FLAM_C SINE Alu -1 132 2 1395 171 114 11 chr13 1302519 1302799 -100570370 - AluSx SINE Alu -3 309 1 2145 100 7 0 chr13 1302936 1303226 -100569943 - AluSx SINE Alu -20 292 1 608 125 29 0 chr13 1303228 1303332 -100569837 - MER2 DNA MER2_type -119 226 120 * 1038 161 92 9 chr13 1303330 1303548 -100569621 - MER2 DNA MER2_type -109 236 1 371 182 172 152 chr13 1303548 1303762 -100569407 + L1MC4 LINE L1 6479 6702 -1340 1623 174 14 31 chr13 1303762 1304049 -100569120 - AluJo SINE Alu -30 282 1 371 182 172 152 chr13 1304049 1304131 -100569038 + L1MC4 LINE L1 6702 6781 -1261 2007 189 78 69 chr13 1304132 1304597 -100568572 + L1MC4a LINE L1 7107 7566 -242 2203 110 0 0 chr13 1304597 1304879 -100568290 + 7SLRNA srpRNA srpRNA 20 301 -19 221 83 28 0 chr13 1304879 1304915 -100568254 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2007 189 78 69 chr13 1304915 1305088 -100568081 + L1MC4a LINE L1 7565 7752 -56 2459 81 0 0 chr13 1305141 1305450 -100567719 - AluY SINE Alu -2 309 1 21 36 0 0 chr13 1306961 1306989 -100566180 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 1308054 1308077 -100565092 + AT_rich Low_complexity Low_complexity 1 23 0 1768 174 17 3 chr13 1308508 1308807 -100564362 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr13 1310070 1310092 -100563077 + AT_rich Low_complexity Low_complexity 1 22 0 298 241 11 0 chr13 1310780 1310867 -100562302 + Charlie5 DNA MER1_type 26 113 -2499 * 1025 184 136 9 chr13 1310858 1311189 -100561980 + Charlie5 DNA MER1_type 2243 2615 0 2260 105 3 0 chr13 1311575 1311870 -100561299 + AluSx SINE Alu 1 296 -16 2447 54 7 3 chr13 1312390 1312687 -100560482 - AluSp SINE Alu -15 298 1 1024 173 0 0 chr13 1312687 1312843 -100560326 - AluSg/x SINE Alu -15 297 142 2237 107 3 0 chr13 1312852 1313143 -100560026 - AluSp SINE Alu -11 302 11 233 263 161 15 chr13 1313180 1313317 -100559852 - MIR SINE MIR -30 232 76 2290 92 0 22 chr13 1313467 1313782 -100559387 - AluY SINE Alu -3 308 1 27 49 0 0 chr13 1314086 1314127 -100559042 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr13 1314517 1314564 -100558605 + (TG)n Simple_repeat Simple_repeat 2 48 0 2364 113 0 0 chr13 1315583 1315892 -100557277 - AluSq SINE Alu -4 309 1 619 183 122 0 chr13 1316265 1316380 -100556789 - FLAM_A SINE Alu -4 129 1 217 308 131 19 chr13 1316529 1316636 -100556533 - MER5B DNA MER1_type 0 178 60 992 187 43 66 chr13 1316846 1317103 -100556066 - AluJo SINE Alu -39 273 23 455 178 28 161 chr13 1317320 1317368 -100555801 + MER58B DNA MER1_type 186 239 -2181 206 32 32 0 chr13 1317368 1317399 -100555770 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 455 178 28 161 chr13 1317399 1317530 -100555639 + MER58B DNA MER1_type 239 341 0 2119 104 0 48 chr13 1317813 1317976 -100555193 - AluSg SINE Alu -16 294 151 2325 90 3 7 chr13 1317976 1318286 -100554883 - AluSc SINE Alu 0 309 1 2119 104 0 48 chr13 1318286 1318431 -100554738 - AluSg SINE Alu -159 151 1 26 0 0 0 chr13 1319860 1319886 -100553283 + AT_rich Low_complexity Low_complexity 1 26 0 2188 88 7 11 chr13 1319888 1320173 -100552996 - AluSg SINE Alu -26 284 1 488 161 58 0 chr13 1320435 1320522 -100552647 - MER58B DNA MER1_type 0 341 250 2276 204 87 15 chr13 1320573 1321112 -100552057 + L1ME1 LINE L1 5557 6134 -32 1816 127 8 4 chr13 1321112 1321380 -100551789 + AluSq SINE Alu 1 269 -44 2418 74 10 3 chr13 1321518 1321816 -100551353 - AluSq SINE Alu -13 300 1 844 297 67 23 chr13 1321834 1322177 -100550992 + L2 LINE L2 174 531 -2783 1109 75 0 0 chr13 1322303 1322436 -100550733 + AluSq/x SINE Alu 1 133 -179 2393 82 13 0 chr13 1322437 1322742 -100550427 + AluY SINE Alu 1 309 -2 2219 105 0 3 chr13 1322749 1323044 -100550125 + AluSx SINE Alu 1 294 -18 397 306 10 31 chr13 1323044 1323237 -100549932 + L2 LINE L2 1786 1974 -1340 280 233 82 0 chr13 1323245 1323318 -100549851 + MIR SINE MIR 112 190 -72 1967 115 0 0 chr13 1323327 1323588 -100549581 + AluSq SINE Alu 1 261 -52 462 36 0 0 chr13 1323609 1323665 -100549504 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2445 86 10 0 chr13 1323682 1323986 -100549183 + AluY SINE Alu 1 307 -4 2041 124 0 0 chr13 1324016 1324320 -100548849 + AluSx SINE Alu 1 304 0 207 241 152 73 chr13 1324336 1324527 -100548642 + L2 LINE L2 1978 2183 -1131 511 106 75 32 chr13 1324614 1324708 -100548461 - MER20 DNA MER1_type -73 146 49 1406 126 5 0 chr13 1324718 1324909 -100548260 - AluSg/x SINE Alu -22 290 99 1187 251 17 14 chr13 1325046 1325333 -100547836 + AluJo SINE Alu 1 288 -14 257 108 290 11 chr13 1325485 1325578 -100547591 - Charlie1 DNA MER1_type -6 2755 2637 1328 205 3 53 chr13 1325580 1325635 -100547534 + AluJo SINE Alu 1 57 -255 2088 132 3 3 chr13 1325635 1325930 -100547239 + AluSx SINE Alu 1 295 -17 1328 205 3 53 chr13 1325930 1326177 -100546992 + AluJo SINE Alu 57 288 -24 1772 129 0 50 chr13 1326187 1326466 -100546703 + AluSx SINE Alu 3 267 -45 2349 69 14 0 chr13 1326519 1326807 -100546362 + AluY SINE Alu 3 294 -17 373 243 33 92 chr13 1326807 1326853 -100546316 - L1ME2 LINE L1 -21 6143 6096 1561 191 38 17 chr13 1326853 1327146 -100546023 - AluJb SINE Alu -13 299 1 373 243 33 92 chr13 1327146 1327251 -100545918 - L1ME2 LINE L1 -68 6096 6001 2324 93 0 3 chr13 1327254 1327556 -100545613 - AluY SINE Alu -10 301 1 1177 172 14 28 chr13 1327726 1327941 -100545228 + MER2 DNA MER2_type 1 212 -133 2216 93 3 50 chr13 1327945 1328268 -100544901 - AluSg SINE Alu -2 308 1 691 171 0 66 chr13 1328279 1328431 -100544738 - FLAM_C SINE Alu 0 143 2 245 196 0 54 chr13 1328479 1328490 -100544679 + MER2 DNA MER2_type 268 278 -67 2032 139 0 16 chr13 1328490 1328807 -100544362 - AluSx SINE Alu 0 312 1 245 196 0 54 chr13 1328807 1328851 -100544318 + MER2 DNA MER2_type 278 320 -25 348 175 20 4 chr13 1329364 1329427 -100543742 + AluJ/FLAM SINE Alu 5 60 -242 2086 118 0 10 chr13 1329660 1329957 -100543212 + AluY SINE Alu 1 294 -17 465 200 11 0 chr13 1329964 1330059 -100543110 + MER66B LTR ERV1 295 390 -96 1151 133 0 22 chr13 1330060 1330077 -100543092 + AluSq SINE Alu 120 136 -177 2325 101 0 7 chr13 1330077 1330383 -100542786 + AluSg SINE Alu 1 304 -6 1151 133 0 22 chr13 1330383 1330545 -100542624 + AluSq SINE Alu 136 295 -18 2152 107 3 3 chr13 1330592 1330891 -100542278 + AluSc SINE Alu 2 300 -9 292 266 150 9 chr13 1330917 1331030 -100542139 + MIR SINE MIR 16 144 -64 371 258 148 19 chr13 1331036 1331191 -100541978 + L1MB4 LINE L1 5444 5618 -2190 231 191 0 0 chr13 1331268 1331331 -100541838 - L1MC4 LINE L1 -1340 6702 6640 1693 178 20 13 chr13 1331332 1331635 -100541534 - AluJb SINE Alu -7 305 1 1165 123 0 98 chr13 1331659 1331863 -100541306 + AluSx SINE Alu 1 184 -128 261 94 0 0 chr13 1331863 1331895 -100541274 + Alu SINE Alu 18 49 -251 2218 98 3 0 chr13 1331895 1332180 -100540989 + AluSq SINE Alu 18 303 -10 1225 141 0 0 chr13 1332182 1332359 -100540810 + AluSq SINE Alu 136 312 -1 2264 105 3 0 chr13 1332541 1332837 -100540332 - AluSx SINE Alu -15 297 1 706 153 0 8 chr13 1332860 1332978 -100540191 - AluSg/x SINE Alu -13 297 181 406 203 0 0 chr13 1332979 1333043 -100540126 - AluS SINE Alu -239 64 1 982 224 97 52 chr13 1333069 1333418 -100539751 - MLT1A1 LTR MaLR 0 365 1 853 224 0 6 chr13 1333524 1333694 -100539475 + FRAM SINE Alu 1 169 -7 1805 138 35 18 chr13 1333697 1333997 -100539172 + L1MB4 LINE L1 5831 6139 -41 2419 67 0 20 chr13 1333997 1334296 -100538873 + AluSc SINE Alu 1 293 -16 1805 138 35 18 chr13 1334296 1334335 -100538834 + L1MB4 LINE L1 6139 6176 -4 26 0 0 27 chr13 1334352 1334374 -100538795 + AT_rich Low_complexity Low_complexity 1 23 -13 1675 140 98 0 chr13 1334374 1334638 -100538531 - AluSx SINE Alu -22 290 1 26 0 0 27 chr13 1334638 1334652 -100538517 + AT_rich Low_complexity Low_complexity 23 36 0 870 169 0 0 chr13 1334658 1334788 -100538381 - AluJb SINE Alu -30 282 153 2211 197 23 25 chr13 1334806 1335118 -100538051 - L1M4 LINE L1 -981 5165 4853 2255 129 0 0 chr13 1335118 1335421 -100537748 + AluSx SINE Alu 1 303 -9 2211 197 23 25 chr13 1335421 1335631 -100537538 - L1M4 LINE L1 -1293 4853 4644 1451 98 16 5 chr13 1336060 1336253 -100536916 + AluSq SINE Alu 107 301 -12 1816 127 8 4 chr13 1336391 1336659 -100536510 - AluSq SINE Alu -44 269 1 2276 204 87 15 chr13 1336659 1337198 -100535971 - L1ME1 LINE L1 -32 6134 5557 488 161 58 0 chr13 1337249 1337336 -100535833 + MER58B DNA MER1_type 250 341 0 2311 67 7 7 chr13 1337598 1337924 -100535245 + AluSg SINE Alu 1 326 0 623 126 11 0 chr13 1339387 1339482 -100533687 - AluJo SINE Alu -177 135 40 1319 96 138 0 chr13 1339811 1339999 -100533170 + AluSg/x SINE Alu 82 295 -15 1849 111 62 21 chr13 1340016 1340304 -100532865 - AluJo SINE Alu -12 300 1 6568 70 7 60 chr13 1340354 1341665 -100531504 - SVA Other Other -551 1382 433 272 183 19 135 chr13 1341797 1341833 -100531336 - MIR SINE MIR -111 151 112 2378 87 0 16 chr13 1341833 1342145 -100531024 + AluY SINE Alu 1 307 -4 272 183 19 135 chr13 1342145 1342212 -100530957 - MIR SINE MIR -150 112 60 2120 117 6 22 chr13 1342225 1342542 -100530627 + AluSx SINE Alu 1 312 0 2170 116 3 7 chr13 1342597 1342898 -100530271 + AluSx SINE Alu 1 300 -12 2125 120 10 0 chr13 1342966 1343267 -100529902 - AluSx SINE Alu -8 304 1 1795 103 84 7 chr13 1344245 1344518 -100528651 + AluSx SINE Alu 5 298 -14 1123 171 11 0 chr13 1344518 1344699 -100528470 + AluSg/x SINE Alu 108 290 -22 2012 124 3 3 chr13 1344709 1345008 -100528161 + AluSx SINE Alu 1 299 -13 522 125 0 0 chr13 1345074 1345146 -100528023 + FRAM SINE Alu 22 93 -83 34 24 0 0 chr13 1345156 1345197 -100527972 + AT_rich Low_complexity Low_complexity 1 41 0 2012 92 9 92 chr13 1345226 1345432 -100527737 - AluSx SINE Alu -5 307 138 1609 115 0 0 chr13 1345432 1345641 -100527528 - AluSx SINE Alu -103 209 1 2012 92 9 92 chr13 1345641 1345769 -100527400 - AluSx SINE Alu -174 138 1 2628 197 100 66 chr13 1345770 1346382 -100526787 - L1ME2 LINE L1 -57 6107 5517 1994 97 45 39 chr13 1346382 1346585 -100526584 - AluSp SINE Alu -2 311 104 2458 49 7 0 chr13 1346585 1346873 -100526296 - AluY SINE Alu -21 290 1 1994 97 45 39 chr13 1346873 1346978 -100526191 - AluSp SINE Alu -209 104 1 1729 167 3 23 chr13 1346987 1347292 -100525877 - AluSx SINE Alu -11 301 3 2628 197 100 66 chr13 1347292 1347476 -100525693 - L1ME2 LINE L1 -654 5510 5334 2449 72 3 7 chr13 1347476 1347781 -100525388 - AluY SINE Alu -7 304 1 2628 197 100 66 chr13 1347781 1347887 -100525282 - L1ME2 LINE L1 -830 5334 5233 1749 171 0 37 chr13 1347887 1348208 -100524961 - AluJo SINE Alu 0 312 4 2628 197 100 66 chr13 1348208 1348484 -100524685 - L1ME2 LINE L1 -931 5233 4882 345 270 92 0 chr13 1348508 1348660 -100524509 - L1ME2 LINE L1 -1330 4816 4651 31 0 0 0 chr13 1348956 1348987 -100524182 + AT_rich Low_complexity Low_complexity 1 31 0 341 104 0 0 chr13 1348987 1349035 -100524134 - AluSq/x SINE Alu -170 133 86 978 173 9 64 chr13 1349035 1349255 -100523914 - AluJo SINE Alu -92 220 13 914 218 0 0 chr13 1349267 1349441 -100523728 - AluJb SINE Alu -5 307 134 1404 198 70 4 chr13 1349463 1349736 -100523433 - AluJb SINE Alu -21 291 1 255 31 0 0 chr13 1349741 1349773 -100523396 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1946 148 0 0 chr13 1349773 1350056 -100523113 - AluSx SINE Alu -29 283 1 704 218 46 25 chr13 1350435 1350521 -100522648 + Looper DNA T2_type 65 148 -1410 732 168 64 0 chr13 1350521 1350646 -100522523 + FLAM_A SINE Alu 1 133 0 704 218 46 25 chr13 1350646 1350780 -100522389 + Looper DNA T2_type 148 293 -1265 198 0 0 0 chr13 1350780 1350802 -100522367 + (TAA)n Simple_repeat Simple_repeat 1 22 0 704 218 46 25 chr13 1350802 1350819 -100522350 + Looper DNA T2_type 293 308 -1250 1271 158 5 5 chr13 1350819 1351021 -100522148 - AluSg/x SINE Alu -25 287 86 398 205 37 81 chr13 1351021 1351182 -100521987 + Looper DNA T2_type 284 437 -1121 1282 170 0 19 chr13 1351195 1351407 -100521762 + AluJb SINE Alu 87 294 -18 887 179 25 6 chr13 1351445 1351607 -100521562 - FRAM SINE Alu -1 165 1 1804 158 10 17 chr13 1352130 1352427 -100520742 - AluSx SINE Alu -17 295 1 275 243 153 0 chr13 1352439 1352550 -100520619 - MIR SINE MIR -13 249 122 944 194 0 0 chr13 1352828 1352988 -100520181 + AluJb SINE Alu 139 298 -14 548 129 24 0 chr13 1353028 1353113 -100520056 - AluSp/q SINE Alu -16 297 211 1309 189 62 38 chr13 1353317 1353476 -100519693 - AluJo SINE Alu -9 303 132 2447 73 0 10 chr13 1353476 1353776 -100519393 - AluSg SINE Alu -13 297 1 1309 189 62 38 chr13 1353776 1353907 -100519262 - AluJo SINE Alu -180 132 6 2112 132 0 0 chr13 1353939 1354234 -100518935 - AluSx SINE Alu -14 298 4 2028 131 0 3 chr13 1354606 1354896 -100518273 - AluSx SINE Alu -15 297 9 1173 154 0 10 chr13 1355303 1355498 -100517671 - AluSg/x SINE Alu 0 310 118 2335 92 0 10 chr13 1355628 1355932 -100517237 - AluSx SINE Alu -11 301 1 2536 55 3 0 chr13 1356158 1356450 -100516719 - AluY SINE Alu -18 293 1 1668 105 158 0 chr13 1356698 1356964 -100516205 - MER51B LTR ERV1 -69 308 1 1590 135 0 4 chr13 1356976 1357205 -100515964 - MER51B-int LTR ERV1 -11 7805 7578 893 124 0 0 chr13 1357206 1357327 -100515842 - MER57-int LTR ERV1 -1471 6066 5946 2657 52 0 0 chr13 1357327 1357636 -100515533 - AluY SINE Alu -2 309 1 21 0 0 0 chr13 1357920 1357941 -100515228 + AT_rich Low_complexity Low_complexity 1 21 0 2279 113 3 0 chr13 1358883 1359194 -100513975 - AluSx SINE Alu 0 312 1 652 246 64 6 chr13 1359227 1359398 -100513771 + MER46C DNA MER2_type 69 249 -89 710 181 88 113 chr13 1359967 1360125 -100513044 - MER46A DNA MER2_type -2499 232 79 1652 160 14 18 chr13 1360125 1360431 -100512738 + AluJb SINE Alu 1 305 0 710 181 88 113 chr13 1360431 1360509 -100512660 - MER46A DNA MER2_type -2652 79 1 1983 130 43 0 chr13 1360865 1361164 -100512005 - AluSx SINE Alu 0 312 1 353 199 128 28 chr13 1361973 1362114 -100511055 - L1MC5 LINE L1 -118 7843 7689 397 284 89 78 chr13 1362274 1362391 -100510778 + L2 LINE L2 2593 2707 -607 1750 146 39 0 chr13 1362391 1362671 -100510498 + AluSx SINE Alu 5 295 -17 397 284 89 78 chr13 1362671 1362835 -100510334 + L2 LINE L2 2707 2877 -437 1922 142 3 3 chr13 1362876 1363164 -100510005 - AluSx SINE Alu -24 288 1 1547 149 54 58 chr13 1363265 1363560 -100509609 - AluJo SINE Alu -17 295 2 321 260 154 0 chr13 1363726 1363849 -100509320 - L2 LINE L2 -1 3312 3171 24 0 0 0 chr13 1367571 1367595 -100505574 + AT_rich Low_complexity Low_complexity 1 24 0 2168 101 3 17 chr13 1367595 1367883 -100505286 - AluSx SINE Alu -24 288 5 444 236 61 61 chr13 1368331 1368560 -100504609 - MER106A DNA MER1_type -5 231 3 436 279 91 20 chr13 1368579 1368776 -100504393 - L2 LINE L2 -519 2795 2585 21 0 0 0 chr13 1371052 1371073 -100502096 + AT_rich Low_complexity Low_complexity 1 21 0 1376 220 54 113 chr13 1371272 1371704 -100501465 - L1ME2 LINE L1 -150 6014 5656 1857 154 0 20 chr13 1371704 1372010 -100501159 - AluJo SINE Alu 0 312 13 1376 220 54 113 chr13 1372010 1372299 -100500870 - L1ME2 LINE L1 -508 5656 5352 22 35 0 0 chr13 1372620 1372649 -100500520 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 1373383 1373418 -100499751 + AT_rich Low_complexity Low_complexity 1 35 0 1873 167 10 0 chr13 1373567 1373866 -100499303 - AluJo SINE Alu -10 302 1 21 23 0 47 chr13 1374468 1374487 -100498682 + AT_rich Low_complexity Low_complexity 1 19 -22 2068 146 0 0 chr13 1374487 1374789 -100498380 + AluSx SINE Alu 1 302 -10 21 23 0 47 chr13 1374789 1374812 -100498357 + AT_rich Low_complexity Low_complexity 19 41 0 1311 214 85 25 chr13 1375025 1375283 -100497886 + MER2 DNA MER2_type 1 283 -62 1893 170 0 3 chr13 1375283 1375589 -100497580 - AluJb SINE Alu -7 305 1 1311 214 85 25 chr13 1375589 1375647 -100497522 + MER2 DNA MER2_type 283 336 -9 23 0 0 0 chr13 1375686 1375709 -100497460 + AT_rich Low_complexity Low_complexity 1 23 0 1791 180 10 0 chr13 1375748 1376043 -100497126 + AluJb SINE Alu 1 298 -14 259 289 82 30 chr13 1376255 1376390 -100496779 - Charlie7 DNA MER1_type -1 2611 2470 2556 50 3 0 chr13 1377551 1377849 -100495320 - AluY SINE Alu -12 299 1 201 273 40 71 chr13 1378104 1378203 -100494966 + MER5A DNA MER1_type 17 112 -77 400 224 131 3 chr13 1378407 1378529 -100494640 + MER5A DNA MER1_type 4 131 -47 1135 191 179 0 chr13 1381733 1381984 -100491185 - AluSx SINE Alu -16 296 1 192 77 0 0 chr13 1382277 1382303 -100490866 + (T)n Simple_repeat Simple_repeat 1 26 0 2260 95 3 0 chr13 1382359 1382653 -100490516 + AluSp SINE Alu 2 296 -17 1734 124 4 12 chr13 1383682 1383940 -100489229 + AluJb SINE Alu 42 297 -15 2125 118 10 3 chr13 1384951 1385247 -100487922 + AluSx SINE Alu 1 298 -14 868 163 7 0 chr13 1385417 1385564 -100487605 + AluSg/x SINE Alu 139 286 -26 409 269 50 50 chr13 1386546 1386687 -100486482 + L2 LINE L2 3169 3309 -4 263 196 0 0 chr13 1386704 1386750 -100486419 - MER81 DNA DNA -68 46 1 2173 209 83 6 chr13 1387019 1387551 -100485618 + L1MC1 LINE L1 5760 6332 -1 2233 96 0 0 chr13 1387599 1387881 -100485288 - AluSx SINE Alu -30 282 1 319 300 110 10 chr13 1388911 1389011 -100484158 + MIR SINE MIR 40 149 -113 1149 163 39 0 chr13 1390548 1390751 -100482418 + AluJb SINE Alu 64 274 -38 201 359 57 19 chr13 1391418 1391577 -100481592 + L2 LINE L2 3080 3244 -28 1625 161 73 4 chr13 1392221 1392494 -100480675 + AluJo SINE Alu 1 292 -20 2325 55 24 17 chr13 1392522 1392815 -100480354 + AluY SINE Alu 1 295 -16 751 224 6 6 chr13 1393287 1393443 -100479726 + Tigger1 DNA MER2_type 2 157 -2261 * 1045 124 129 16 chr13 1393432 1393626 -100479543 + Tigger1 DNA MER2_type 2202 2417 -1 777 144 30 23 chr13 1393650 1393782 -100479387 - FLAM_A SINE Alu 0 133 1 280 290 99 38 chr13 1393889 1394261 -100478908 + L1M4 LINE L1 4222 4616 -1530 2472 51 3 26 chr13 1394493 1394805 -100478364 + AluY SINE Alu 1 305 -6 1932 158 0 3 chr13 1395082 1395379 -100477790 - AluJb SINE Alu -16 296 1 344 283 147 28 chr13 1396744 1396921 -100476248 - MIR SINE MIR -56 206 9 975 105 7 7 chr13 1397174 1397317 -100475852 - AluSg/x SINE Alu -10 299 157 1112 99 0 7 chr13 1397383 1397525 -100475644 - AluSq/x SINE Alu -170 143 3 2237 102 27 0 chr13 1397618 1397913 -100475256 - AluSx SINE Alu -9 303 1 2298 100 0 3 chr13 1397982 1398283 -100474886 - AluSx SINE Alu -12 300 1 300 195 53 62 chr13 1398330 1398443 -100474726 - L1M4 LINE L1 -1806 4340 4229 993 168 12 6 chr13 1398460 1398627 -100474542 - FRAM SINE Alu -7 169 2 189 0 0 0 chr13 1398627 1398648 -100474521 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1610 142 67 8 chr13 1398657 1398924 -100474245 - AluSq SINE Alu -28 285 3 499 208 47 0 chr13 1398947 1399076 -100474093 - L1M4 LINE L1 -1958 4188 4054 820 139 16 0 chr13 1399077 1399206 -100473963 + AluJb SINE Alu 1 131 -181 234 0 0 0 chr13 1399262 1399288 -100473881 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1622 189 28 0 chr13 1399288 1399567 -100473602 - AluJo SINE Alu -25 287 1 358 268 77 72 chr13 1399652 1399795 -100473374 - L1M4 LINE L1 -2311 3835 3689 2214 114 3 0 chr13 1399795 1400094 -100473075 - AluSp SINE Alu -13 300 1 358 268 77 72 chr13 1400094 1400185 -100472984 - L1M4 LINE L1 -2457 3689 3600 2089 91 21 14 chr13 1400278 1400564 -100472605 - L1PA7 LINE L1 -2 6152 5865 12541 100 20 31 chr13 1400564 1402628 -100470541 - L1P3 LINE L1 -4369 2092 5 2123 114 0 13 chr13 1402644 1402943 -100470226 - AluSg SINE Alu -15 295 1 976 191 12 18 chr13 1403043 1403211 -100469958 - FAM SINE Alu -8 167 1 1961 135 24 3 chr13 1403214 1403510 -100469659 - AluSx SINE Alu -10 302 1 316 253 41 68 chr13 1403769 1403915 -100469254 - L1MEd LINE L1 -5958 161 20 36 0 0 0 chr13 1406139 1406175 -100466994 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 1406579 1406615 -100466554 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 18 30 chr13 1406796 1406964 -100466205 - L1ME LINE L1 -376 5745 5580 22 0 0 0 chr13 1407013 1407035 -100466134 + AT_rich Low_complexity Low_complexity 1 22 0 244 342 0 0 chr13 1407919 1408039 -100465130 + T-rich Low_complexity Low_complexity 1 120 0 1963 96 92 0 chr13 1408999 1409271 -100463898 - AluSg SINE Alu -13 297 1 24 0 0 0 chr13 1409774 1409798 -100463371 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 132 53 chr13 1409863 1410106 -100463063 + HAL1b LINE L1 340 601 -747 190 94 62 0 chr13 1410152 1410184 -100462985 - MER5A DNA MER1_type -148 41 8 629 247 136 49 chr13 1410507 1410876 -100462293 + L1MC4a LINE L1 6120 6520 -1288 226 308 100 8 chr13 1410932 1411052 -100462117 + L1MC4 LINE L1 6870 7000 -1042 1588 180 6 29 chr13 1411211 1411527 -100461642 + AluJo SINE Alu 1 309 -3 1134 237 58 13 chr13 1412161 1412473 -100460696 - MER63C DNA MER1_type -552 378 53 2037 134 10 3 chr13 1412826 1412965 -100460204 + AluSx SINE Alu 1 138 -174 2360 95 0 16 chr13 1412965 1413280 -100459889 + AluSq SINE Alu 1 310 -3 2037 134 10 3 chr13 1413280 1413439 -100459730 + AluSx SINE Alu 138 301 -11 849 228 0 6 chr13 1413439 1413619 -100459550 + AluJb SINE Alu 134 312 0 770 189 0 0 chr13 1414091 1414218 -100458951 + FLAM_A SINE Alu 1 127 -6 262 236 112 0 chr13 1414227 1414316 -100458853 - L1ME LINE L1 -518 5603 5505 461 184 146 0 chr13 1414316 1414419 -100458750 + MER58 DNA MER1_type 1 118 -223 723 239 52 14 chr13 1414421 1414634 -100458535 - MIR SINE MIR -11 251 31 1938 142 33 3 chr13 1414635 1414938 -100458231 - AluSx SINE Alu 0 312 1 845 220 163 72 chr13 1414994 1415152 -100458017 + LTR38 LTR ERV1 1 143 -413 2355 104 0 0 chr13 1415152 1415449 -100457720 + AluSg SINE Alu 1 297 -13 845 220 163 72 chr13 1415449 1415653 -100457516 + LTR38 LTR ERV1 143 396 -160 2007 78 0 0 chr13 1415661 1415905 -100457264 - AluSx SINE Alu -13 299 56 2318 76 14 3 chr13 1416139 1416428 -100456741 - AluSc SINE Alu -17 292 1 2476 68 0 0 chr13 1416646 1416941 -100456228 - AluY SINE Alu -16 295 1 477 49 0 0 chr13 1417136 1417197 -100455972 + AluY SINE Alu 1 61 -257 338 172 180 16 chr13 1417310 1417438 -100455731 + L1MC4 LINE L1 7877 8025 -17 366 265 10 29 chr13 1417636 1417738 -100455431 - L2 LINE L2 0 3313 3214 24 32 0 0 chr13 1417953 1417984 -100455185 + AT_rich Low_complexity Low_complexity 1 31 0 1724 160 27 7 chr13 1417984 1418277 -100454892 + AluJb SINE Alu 1 299 -13 2110 98 52 33 chr13 1418613 1418981 -100454188 - THE1C LTR MaLR 0 375 1 2246 71 3 30 chr13 1419225 1419521 -100453648 - AluSg SINE Alu -22 288 1 216 345 0 0 chr13 1419526 1419584 -100453585 - L2 LINE L2 -14 3258 3201 210 277 77 0 chr13 1419770 1419835 -100453334 + L2 LINE L2 3241 3310 -3 234 150 163 25 chr13 1422217 1422297 -100450872 + L1MC4 LINE L1 7002 7172 -716 231 213 33 16 chr13 1422571 1422632 -100450537 + L1MC4 LINE L1 7498 7559 -483 1745 168 0 3 chr13 1422822 1423113 -100450056 + AluJb SINE Alu 1 290 -22 1154 150 102 88 chr13 1423146 1423420 -100449749 + AluJb SINE Alu 2 279 -33 794 100 9 0 chr13 1423420 1423530 -100449639 - THE1C LTR MaLR -3 372 262 4077 64 0 15 chr13 1423530 1424049 -100449120 - MER9 LTR ERVK 0 511 1 8008 85 19 10 chr13 1424049 1425453 -100447716 - HERVK9 LTR ERVK 0 8032 4582 1855 48 13 0 chr13 1425452 1425680 -100447489 - HERVK9 LTR ERVK -1975 3941 3711 * 14094 56 1 0 chr13 1425680 1427353 -100445816 - HERVK9 LTR ERVK -3130 2786 1113 4393 79 2 7 chr13 1427354 1427925 -100445244 - HERVK9 LTR ERVK -5348 568 1 3883 88 0 6 chr13 1427925 1428439 -100444730 - MER9 LTR ERVK 0 511 1 1429 119 40 36 chr13 1428439 1428690 -100444479 - THE1C LTR MaLR -109 266 15 688 254 69 0 chr13 1428699 1428872 -100444297 + AluJo SINE Alu 98 282 -30 223 159 0 32 chr13 1428915 1428978 -100444191 + (TA)n Simple_repeat Simple_repeat 1 61 0 1773 160 50 0 chr13 1429078 1429359 -100443810 - AluJo SINE Alu -17 295 1 2251 151 81 2 chr13 1429564 1429961 -100443208 + MSTC LTR MaLR 1 428 0 1652 147 4 4 chr13 1429997 1430256 -100442913 + MER2 DNA MER2_type 7 265 -80 1887 202 129 28 chr13 1430418 1430493 -100442676 - REP3 LTR ERV 0 562 496 1780 130 68 17 chr13 1430493 1430786 -100442383 - AluSx SINE Alu -4 308 1 1887 202 129 28 chr13 1430786 1431220 -100441949 - REP3 LTR ERV -66 496 1 607 285 39 81 chr13 1431223 1431364 -100441805 - L1M4 LINE L1 -2678 3468 3323 1763 147 67 7 chr13 1431364 1431649 -100441520 - AluJo SINE Alu -10 302 1 607 285 39 81 chr13 1431649 1431729 -100441440 - L1M4 LINE L1 -2823 3323 3241 2165 115 10 3 chr13 1431729 1432034 -100441135 - AluSx SINE Alu -5 307 1 607 285 39 81 chr13 1432034 1432218 -100440951 - L1M4 LINE L1 -2905 3241 3079 1881 165 3 7 chr13 1432613 1432916 -100440253 - AluJb SINE Alu -10 302 1 361 273 9 0 chr13 1433176 1433286 -100439883 - HAL1 LINE L1 -700 1807 1697 296 197 0 61 chr13 1433291 1433357 -100439812 - MER20 DNA MER1_type -3 216 155 386 326 60 62 chr13 1433357 1433570 -100439599 - L2 LINE L2 -481 2833 2621 1589 189 0 29 chr13 1433570 1433876 -100439293 + AluJo SINE Alu 3 299 -13 2564 63 0 0 chr13 1433882 1434184 -100438985 - AluY SINE Alu -9 302 1 386 326 60 62 chr13 1434184 1434450 -100438719 - L2 LINE L2 -698 2616 2348 2311 106 0 3 chr13 1434450 1434753 -100438416 + AluSx SINE Alu 1 302 -10 427 253 71 22 chr13 1434794 1434976 -100438193 + L1MB2 LINE L1 -723 4294966763 -6839 1453 167 38 88 chr13 1435019 1435384 -100437785 - MER31B LTR ERV1 -119 347 1 2093 239 65 32 chr13 1435744 1436344 -100436825 + L1MB2 LINE L1 801 1638 -4675 2210 144 33 22 chr13 1436344 1436704 -100436465 - THE1B LTR MaLR 0 364 1 2093 239 65 32 chr13 1436704 1436870 -100436299 + L1MB2 LINE L1 1638 1797 -4516 43874 51 6 5 chr13 1436870 1443214 -100429955 + L1PA5 LINE L1 2 6291 0 4126 199 19 59 chr13 1443205 1443219 -100429950 + L1MB2 LINE L1 4638 4651 -1756 * 1851 126 25 14 chr13 1443219 1443535 -100429634 + AluSx SINE Alu 1 319 0 4126 199 19 59 chr13 1443535 1444118 -100429051 + L1MB2 LINE L1 4651 5256 -1151 2065 97 0 91 chr13 1444118 1444438 -100428731 + AluSx SINE Alu 1 291 -21 4126 199 19 59 chr13 1444438 1444469 -100428700 + L1MB2 LINE L1 5256 5287 -1120 2238 102 3 0 chr13 1444469 1444762 -100428407 + AluSp SINE Alu 1 294 -19 4126 199 19 59 chr13 1444762 1445436 -100427733 + L1MB2 LINE L1 5287 5987 -420 2101 103 24 14 chr13 1445436 1445746 -100427423 + AluSx SINE Alu 1 312 0 4126 199 19 59 chr13 1445746 1446111 -100427058 + L1MB2 LINE L1 5987 6204 -203 2254 88 14 0 chr13 1446111 1446405 -100426764 - AluSx SINE Alu -6 306 9 4126 199 19 59 chr13 1446405 1446602 -100426567 + L1MB2 LINE L1 6204 6407 0 329 278 121 31 chr13 1446648 1446871 -100426298 - L2 LINE L2 -1040 2274 2032 408 236 56 23 chr13 1447030 1447246 -100425923 + L1ME3A LINE L1 5845 6122 -48 1690 172 19 19 chr13 1447270 1447578 -100425591 + AluJo SINE Alu 3 310 -2 791 149 0 30 chr13 1447626 1447760 -100425409 + AluJo SINE Alu 4 133 -169 540 246 105 37 chr13 1448187 1448542 -100424627 - MLT1J LTR MaLR -30 481 58 1793 167 0 14 chr13 1448725 1449019 -100424150 - AluSx SINE Alu -22 290 1 1014 171 11 27 chr13 1449645 1449832 -100423337 + AluJo SINE Alu 120 303 -9 333 230 23 0 chr13 1449837 1449924 -100423245 + L1M4 LINE L1 5024 5112 -1034 2331 171 68 16 chr13 1450084 1450568 -100422601 - LTR22 LTR ERVK 0 509 1 278 205 51 39 chr13 1450950 1451028 -100422141 - MIR SINE MIR -64 144 66 2393 67 3 0 chr13 1451343 1451627 -100421542 + AluSp SINE Alu 1 285 -28 180 0 0 0 chr13 1451630 1451650 -100421519 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2384 74 0 0 chr13 1453220 1453505 -100419664 + AluSx SINE Alu 1 285 -27 8519 49 1 0 chr13 1453578 1454543 -100418626 - LTR5 LTR ERVK -3 966 1 210 118 0 0 chr13 1454548 1454582 -100418587 + (T)n Simple_repeat Simple_repeat 1 34 0 2199 104 3 7 chr13 1454589 1454888 -100418281 + AluSq SINE Alu 1 298 -15 2379 98 0 0 chr13 1455237 1455544 -100417625 + AluSx SINE Alu 1 307 -5 865 186 14 0 chr13 1455546 1455691 -100417478 + AluJo/FRAM SINE Alu 140 286 -26 279 104 0 0 chr13 1455691 1455739 -100417430 + (CA)n Simple_repeat Simple_repeat 2 49 0 2277 113 3 3 chr13 1455831 1456141 -100417028 - AluSq SINE Alu -2 311 2 1986 117 0 66 chr13 1456510 1456615 -100416554 + AluJb SINE Alu 1 111 -201 4093 127 21 68 chr13 1456615 1457340 -100415829 - LTR8 LTR ERV1 0 691 1 1986 117 0 66 chr13 1457340 1457568 -100415601 + AluJb SINE Alu 111 312 0 2301 93 0 0 chr13 1457987 1458277 -100414892 - AluSg SINE Alu -18 292 3 1166 130 0 0 chr13 1458800 1458962 -100414207 + AluSg/x SINE Alu 137 298 -14 1856 122 7 19 chr13 1459429 1459700 -100413469 + AluSx SINE Alu 40 307 -5 5786 21 0 1 chr13 1459700 1460349 -100412820 + L1PA2 LINE L1 5507 6154 -1 1966 139 16 0 chr13 1460500 1460823 -100412346 - L1MA5 LINE L1 0 6300 5973 186 240 0 0 chr13 1460995 1461045 -100412124 + G-rich Low_complexity Low_complexity 3 52 0 21 36 0 0 chr13 1461074 1461102 -100412067 + AT_rich Low_complexity Low_complexity 1 28 0 1704 164 7 45 chr13 1461313 1461623 -100411546 - AluJo SINE Alu -14 298 1 955 227 91 43 chr13 1461646 1461970 -100411199 - MLT1L LTR MaLR -91 524 136 1356 251 40 6 chr13 1461970 1462297 -100410872 - MER58B DNA MER1_type -3 338 1 955 227 91 43 chr13 1462297 1462398 -100410771 - MLT1L LTR MaLR -479 136 41 265 326 80 64 chr13 1462617 1462804 -100410365 - L2 LINE L2 -12 3260 3071 645 284 125 50 chr13 1462972 1463475 -100409694 - LTR67 LTR ERVL -15 542 2 271 264 97 28 chr13 1463487 1463631 -100409538 - L2 LINE L2 -304 2968 2815 21 0 0 0 chr13 1463674 1463695 -100409474 + AT_rich Low_complexity Low_complexity 1 21 0 1736 154 26 4 chr13 1463715 1463987 -100409182 - AluJo SINE Alu -33 279 2 1651 173 0 67 chr13 1464640 1464970 -100408199 - AluJo SINE Alu -4 308 1 415 222 80 91 chr13 1465552 1465616 -100407553 + MIR SINE MIR 86 149 -113 2193 107 3 29 chr13 1465616 1465924 -100407245 + AluSg SINE Alu 1 300 -10 415 222 80 91 chr13 1465924 1466035 -100407134 + MIR SINE MIR 149 259 -3 590 105 0 12 chr13 1466173 1466259 -100406910 - FLAM_A SINE Alu -14 128 44 572 250 0 20 chr13 1466286 1466438 -100406731 - L2 LINE L2 -1 3312 3164 326 281 70 18 chr13 1466450 1466564 -100406605 + L2 LINE L2 3152 3271 -1 1411 179 8 23 chr13 1468118 1468380 -100404789 - AluJb SINE Alu -23 289 32 396 0 0 0 chr13 1468436 1468480 -100404689 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 143 0 0 chr13 1469140 1469447 -100403722 - AluSx SINE Alu -5 307 1 826 214 21 16 chr13 1469507 1469699 -100403470 - MIR SINE MIR -10 252 60 1899 91 47 14 chr13 1469992 1470294 -100402875 + AluY SINE Alu 1 311 0 1271 119 0 0 chr13 1470294 1470470 -100402699 + AluSg/x SINE Alu 125 300 -10 7461 118 19 16 chr13 1470631 1472698 -100400471 + L1MA1 LINE L1 4234 6302 0 955 228 122 108 chr13 1472760 1473295 -100399874 + MLT1H1 LTR MaLR 1 555 0 1700 132 19 16 chr13 1473768 1474025 -100399144 - AluJb SINE Alu -54 258 1 1351 215 21 30 chr13 1474036 1474366 -100398803 - L1ME1 LINE L1 -5 6161 5835 322 298 119 18 chr13 1474466 1474634 -100398535 + MER5A DNA MER1_type 1 185 -4 391 214 31 31 chr13 1474662 1474760 -100398409 + MIR SINE MIR 40 137 -125 486 278 38 48 chr13 1474771 1474980 -100398189 - L2 LINE L2 -1 3312 3106 625 154 34 26 chr13 1475263 1475380 -100397789 - MLT1J LTR MaLR -326 185 68 7915 35 6 3 chr13 1475749 1477180 -100395989 - L1PA4 LINE L1 -3 6152 4720 12548 31 1 0 chr13 1477180 1478654 -100394515 + L1PA4 LINE L1 3274 4749 -1397 2100 117 21 0 chr13 1478888 1479178 -100393991 + AluSx SINE Alu 1 296 -16 1695 162 179 17 chr13 1479231 1479650 -100393519 + LTR54B LTR ERV1 8 494 -4 2228 97 0 3 chr13 1480034 1480332 -100392837 - AluSx SINE Alu -15 297 1 2010 95 0 70 chr13 1480346 1480662 -100392507 - AluSx SINE Alu -18 294 1 2244 79 0 0 chr13 1480759 1481059 -100392110 - AluY SINE Alu 0 300 1 1242 219 150 27 chr13 1481255 1481621 -100391548 - MLT1G3 LTR MaLR -10 520 110 620 229 15 0 chr13 1481611 1481742 -100391427 - MER119 DNA MER1_type -277 306 174 * 787 183 100 19 chr13 1481752 1481993 -100391176 - MER2 DNA MER2_type 0 345 24 233 205 0 0 chr13 1482100 1482139 -100391030 - MER119 DNA MER1_type -538 45 7 * 993 291 160 11 chr13 1482128 1482565 -100390604 - MLT1G1 LTR MaLR -89 506 5 2190 96 0 32 chr13 1482723 1483036 -100390133 - AluY SINE Alu -8 303 1 370 279 39 8 chr13 1483052 1483181 -100389988 - L1MC5 LINE L1 -48 7913 7781 602 219 150 43 chr13 1483202 1483435 -100389734 - L1ME2 LINE L1 0 6164 5907 1086 153 34 0 chr13 1483437 1483614 -100389555 - AluSg/x SINE Alu -8 304 122 520 193 196 2 chr13 1483620 1483774 -100389395 - L1ME2 LINE L1 -273 5893 5712 2163 117 0 17 chr13 1484126 1484426 -100388743 - AluSx SINE Alu -17 295 1 1833 172 3 0 chr13 1485209 1485499 -100387670 + AluJo SINE Alu 1 291 -21 41 36 0 0 chr13 1487116 1487171 -100385998 + AT_rich Low_complexity Low_complexity 1 55 0 274 324 69 6 chr13 1487348 1487521 -100385648 + MIR SINE MIR 40 223 -39 2136 84 0 84 chr13 1487834 1488154 -100385015 - AluSg SINE Alu -17 293 1 2227 111 3 7 chr13 1488184 1488491 -100384678 - AluSq SINE Alu -7 306 1 21 0 0 0 chr13 1488658 1488679 -100384490 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 1488724 1488754 -100384415 + AT_rich Low_complexity Low_complexity 1 30 0 2788 16 0 0 chr13 1489252 1489556 -100383613 + AluY SINE Alu 1 304 -7 2055 100 0 91 chr13 1491575 1491741 -100381428 - AluSq SINE Alu -14 299 176 2244 91 3 7 chr13 1491741 1492050 -100381119 - AluSg1 SINE Alu -1 308 1 2055 100 0 91 chr13 1492050 1492212 -100380957 - AluSq SINE Alu -137 176 1 2331 58 29 23 chr13 1492478 1492811 -100380358 - AluY SINE Alu 0 335 1 25 0 0 0 chr13 1493340 1493365 -100379804 + GC_rich Low_complexity Low_complexity 1 25 0 2256 177 65 0 chr13 1497077 1497461 -100375708 - LTR57 LTR ERVL -2 409 1 215 228 0 35 chr13 1497643 1497700 -100375469 - L2 LINE L2 -93 3220 3166 1245 228 4 0 chr13 1497973 1498219 -100374950 + AluJo SINE Alu 39 285 -27 2471 84 10 0 chr13 1498648 1498957 -100374212 + AluSq SINE Alu 1 312 -1 238 314 0 35 chr13 1499306 1499392 -100373777 + L2 LINE L2 3231 3313 0 292 286 152 0 chr13 1499571 1499683 -100373486 + MIR SINE MIR 124 252 -10 188 273 0 0 chr13 1499687 1499731 -100373438 + MIR SINE MIR 219 262 0 413 285 63 39 chr13 1500110 1500317 -100372852 + L1ME4a LINE L1 5615 5826 -295 2343 74 0 0 chr13 1500336 1500667 -100372502 - AluY SINE Alu 0 331 1 2428 223 48 29 chr13 1500809 1501428 -100371741 - L1ME1 LINE L1 -5 6161 5531 276 250 125 11 chr13 1501526 1501614 -100371555 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 1501872 1501895 -100371274 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 1503061 1503085 -100370084 + AT_rich Low_complexity Low_complexity 1 24 0 2099 122 14 0 chr13 1503158 1503453 -100369716 - AluSx SINE Alu -13 299 1 298 261 80 0 chr13 1503597 1503685 -100369484 + MIR SINE MIR 47 141 -121 1013 165 23 6 chr13 1503800 1503976 -100369193 + AluSg/x SINE Alu 133 311 -1 434 208 15 85 chr13 1504061 1504191 -100368978 + MIR SINE MIR 87 207 -55 6128 130 37 26 chr13 1504590 1505628 -100367541 - L1PA15 LINE L1 -4 6161 5112 1977 125 10 10 chr13 1505628 1505924 -100367245 - AluSq SINE Alu -17 296 1 6128 130 37 26 chr13 1505924 1506112 -100367057 - L1PA15 LINE L1 -1053 5112 4928 28 29 0 0 chr13 1506780 1506815 -100366354 + AT_rich Low_complexity Low_complexity 1 35 0 533 278 211 30 chr13 1506989 1507015 -100366154 - L1MC4a LINE L1 -1897 5911 5891 219 114 0 0 chr13 1507015 1507050 -100366119 + (TA)n Simple_repeat Simple_repeat 1 35 0 533 278 211 30 chr13 1507050 1507393 -100365776 - L1MC4a LINE L1 -1917 5891 5475 872 154 7 7 chr13 1507442 1507585 -100365584 - AluJo SINE Alu -169 143 1 471 230 40 43 chr13 1507628 1507966 -100365203 - HAL1 LINE L1 -1011 1496 1059 2376 112 0 0 chr13 1507971 1508283 -100364886 + AluSq SINE Alu 1 312 -1 335 114 0 0 chr13 1508354 1508398 -100364771 - Alu SINE Alu -257 44 1 367 310 33 26 chr13 1508422 1508542 -100364627 - MLT1J1 LTR MaLR -284 188 78 1580 161 3 71 chr13 1508542 1508865 -100364304 - AluJo SINE Alu -11 301 1 367 310 33 26 chr13 1508865 1508942 -100364227 - MLT1J1 LTR MaLR -394 78 3 1204 321 110 32 chr13 1508947 1509757 -100363412 - HAL1 LINE L1 -1618 889 17 462 65 0 0 chr13 1509781 1509843 -100363326 + (TG)n Simple_repeat Simple_repeat 2 63 0 1505 211 3 23 chr13 1509848 1510147 -100363022 - AluJo SINE Alu -19 293 1 183 42 0 0 chr13 1510335 1510359 -100362810 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 806 214 135 17 chr13 1510414 1510678 -100362491 - L1MDa LINE L1 -3890 2650 2434 2063 146 7 0 chr13 1510678 1510980 -100362189 - AluJb SINE Alu -8 304 1 806 214 135 17 chr13 1510980 1511079 -100362090 - L1MDa LINE L1 -4106 2434 2348 1989 114 14 7 chr13 1511105 1511402 -100361767 + AluSq SINE Alu 1 299 -14 2126 117 19 10 chr13 1511408 1511715 -100361454 + AluSx SINE Alu 1 310 -2 1680 154 57 0 chr13 1511769 1512048 -100361121 - AluJo SINE Alu -17 295 1 350 166 47 24 chr13 1512366 1512451 -100360718 + MLT1E3 LTR MaLR 420 491 -102 828 183 21 0 chr13 1512454 1512596 -100360573 + FRAM SINE Alu 11 155 -21 554 290 100 29 chr13 1512610 1512920 -100360249 + L1ME3A LINE L1 3307 3638 -2508 865 258 34 34 chr13 1513025 1513320 -100359849 + L1ME3A LINE L1 3866 4160 -1986 1272 240 98 54 chr13 1513369 1513869 -100359300 + MLT1E LTR MaLR 70 591 -2 790 214 62 95 chr13 1513973 1514156 -100359013 + L1ME3A LINE L1 4322 4509 -1637 1988 143 0 10 chr13 1514156 1514480 -100358689 + AluSx SINE Alu 1 321 0 790 214 62 95 chr13 1514480 1514596 -100358573 + L1ME3A LINE L1 4509 4627 -1519 2033 146 3 0 chr13 1514596 1514898 -100358271 - AluSq SINE Alu -10 303 1 790 214 62 95 chr13 1514898 1515122 -100358047 + L1ME3A LINE L1 4627 4832 -1314 1749 109 121 6 chr13 1515160 1515171 -100357998 + MSTC LTR MaLR 1 9 -419 2627 98 17 3 chr13 1515171 1515530 -100357639 - THE1B LTR MaLR 0 364 1 1749 109 121 6 chr13 1515530 1515858 -100357311 + MSTC LTR MaLR 9 379 -49 2173 104 44 3 chr13 1515944 1516241 -100356928 + AluSx SINE Alu 1 309 -3 2391 71 0 0 chr13 1516241 1516538 -100356631 + AluY SINE Alu 1 297 -14 381 248 126 9 chr13 1516542 1516756 -100356413 + L1ME3A LINE L1 5041 5279 -867 2232 120 0 7 chr13 1516856 1517165 -100356004 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr13 1517176 1517205 -100355964 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2346 90 3 3 chr13 1517227 1517527 -100355642 + AluSq SINE Alu 1 300 -13 457 230 171 21 chr13 1517528 1517767 -100355402 + L1P5 LINE L1 5292 5566 -590 306 243 37 7 chr13 1517777 1517913 -100355256 + (TA)n Simple_repeat Simple_repeat 1 140 0 504 275 26 0 chr13 1518030 1518219 -100354950 + L1ME3A LINE L1 5746 5939 -231 248 200 27 45 chr13 1518390 1518500 -100354669 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2071 119 3 14 chr13 1518825 1519149 -100354020 + AluSx SINE Alu 1 321 0 2107 124 3 3 chr13 1519529 1519836 -100353333 - AluSx SINE Alu -4 308 2 1779 157 67 6 chr13 1520391 1520736 -100352433 + MER47A DNA MER2_type 1 366 0 232 207 264 43 chr13 1520993 1521133 -100352036 + MIR SINE MIR 31 201 -61 298 250 42 0 chr13 1521702 1521774 -100351395 - L2 LINE L2 0 3272 3198 264 274 14 103 chr13 1521884 1522030 -100351139 + L2 LINE L2 3180 3312 -1 1130 149 78 136 chr13 1522131 1522528 -100350641 - MLT1A2 LTR MaLR 0 374 1 2330 104 0 0 chr13 1522815 1523113 -100350056 - AluSx SINE Alu -14 298 1 2484 140 33 13 chr13 1523468 1523926 -100349243 + L1MB4 LINE L1 5714 6180 0 1757 137 74 0 chr13 1523933 1524204 -100348965 + AluJo SINE Alu 1 291 -21 892 111 0 0 chr13 1525331 1525448 -100347721 + AluSq/x SINE Alu 1 117 -196 2100 116 7 7 chr13 1525626 1525920 -100347249 - AluSx SINE Alu -18 294 1 1720 140 74 0 chr13 1526809 1527080 -100346089 - AluJo SINE Alu -21 291 1 1249 155 52 16 chr13 1527087 1527339 -100345830 - L1MB4 LINE L1 0 6180 5920 26 30 0 0 chr13 1528508 1528541 -100344628 + AT_rich Low_complexity Low_complexity 1 33 0 4497 213 43 13 chr13 1528687 1530478 -100342691 + L1M2 LINE L1 1617 3457 -3391 318 26 0 0 chr13 1531872 1531911 -100341258 + (CA)n Simple_repeat Simple_repeat 1 39 0 2228 119 0 0 chr13 1533628 1533922 -100339247 + AluSg SINE Alu 1 294 -16 643 229 68 71 chr13 1534424 1534747 -100338422 - L1MC4 LINE L1 -678 7364 7043 504 283 82 80 chr13 1535090 1535628 -100337541 - L1MEd LINE L1 -4900 1219 681 365 167 12 48 chr13 1535692 1535776 -100337393 - MER94 DNA DNA -48 86 6 422 226 13 69 chr13 1535906 1536065 -100337104 - MER57A LTR ERV1 -4 399 250 2587 198 41 68 chr13 1536189 1536569 -100336600 + L1M2 LINE L1 3374 3763 -3085 2128 79 7 7 chr13 1536569 1536844 -100336325 + L1PA5 LINE L1 5860 6150 -4 2587 198 41 68 chr13 1536844 1537366 -100335803 + L1M2 LINE L1 3763 4252 -2596 2170 158 10 5 chr13 1537372 1537759 -100335410 + Tigger1 DNA MER2_type 2029 2417 -1 199 167 30 0 chr13 1537764 1537830 -100335339 + (TA)n Simple_repeat Simple_repeat 1 68 0 1041 159 36 36 chr13 1538639 1538834 -100334335 - AluJb SINE Alu -117 195 1 380 193 202 0 chr13 1538834 1538948 -100334221 - L1MB4 LINE L1 -269 5909 5773 1907 104 57 13 chr13 1538959 1539275 -100333894 - L1MA4A LINE L1 0 6303 5974 986 94 8 0 chr13 1539276 1539403 -100333766 - AluSq/x SINE Alu -185 128 1 5459 102 28 15 chr13 1539696 1541195 -100331974 - L1PA15 LINE L1 -8 6157 4675 308 309 115 36 chr13 1541196 1541448 -100331721 + L2 LINE L2 2487 2758 -556 310 400 24 28 chr13 1541491 1541746 -100331423 + L2 LINE L2 2839 3092 -180 563 315 90 21 chr13 1541755 1542133 -100331036 - L1MEd LINE L1 -5262 1372 969 407 187 58 79 chr13 1542349 1542488 -100330681 - L1MEd LINE L1 -5924 618 483 2280 108 16 0 chr13 1542656 1542962 -100330207 + AluSx SINE Alu 1 311 -1 1499 261 72 19 chr13 1542974 1543491 -100329678 + L1M4 LINE L1 2 545 -5997 2354 105 0 13 chr13 1543501 1543816 -100329353 + AluY SINE Alu 1 311 0 2220 197 21 0 chr13 1543853 1544289 -100328880 - MER44D DNA MER2_type -61 544 228 679 221 11 103 chr13 1544292 1544554 -100328615 + L1M4 LINE L1 1866 2103 -4543 418 283 18 27 chr13 1544585 1544804 -100328365 + L1M4 LINE L1 2287 2503 -4143 801 287 89 43 chr13 1544832 1545438 -100327731 + L1M4 LINE L1 2616 3249 -3395 3045 193 34 5 chr13 1545557 1546344 -100326825 + L1M4 LINE L1 2462 3271 -2875 1513 222 90 28 chr13 1546426 1546568 -100326601 + L1M4 LINE L1 4009 4141 -2005 180 0 0 0 chr13 1546568 1546588 -100326581 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1513 222 90 28 chr13 1546588 1546989 -100326180 + L1M4 LINE L1 4141 4586 -1560 7182 170 56 43 chr13 1547097 1547812 -100325357 - ERVL LTR ERVL -1512 4252 3547 2064 132 0 20 chr13 1547812 1548116 -100325053 - AluSx SINE Alu -14 298 1 7182 170 56 43 chr13 1548116 1548920 -100324249 - ERVL LTR ERVL -2217 3547 2714 2000 157 0 3 chr13 1548925 1549237 -100323932 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr13 1549245 1549267 -100323902 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr13 1549444 1549466 -100323703 + (A)n Simple_repeat Simple_repeat 1 22 0 6008 188 47 21 chr13 1549476 1550401 -100322768 - ERVL LTR ERVL -3042 2722 1754 2146 124 0 35 chr13 1550401 1550715 -100322454 + AluSx SINE Alu 1 303 -9 6008 188 47 21 chr13 1550715 1551063 -100322106 - ERVL LTR ERVL -4010 1754 1416 536 129 50 0 chr13 1551138 1551239 -100321930 + AluSg/x SINE Alu 203 308 -2 1454 206 4 0 chr13 1551240 1551521 -100321648 - ERVL LTR ERVL -4401 1363 1082 310 130 0 0 chr13 1551521 1551567 -100321602 - Alu SINE Alu -8 292 247 358 206 152 0 chr13 1551667 1551759 -100321410 - ERVL LTR ERVL -4746 1018 913 2169 127 0 3 chr13 1551789 1552097 -100321072 + AluSq SINE Alu 1 307 -6 1155 198 48 17 chr13 1552554 1552847 -100320322 + Charlie1b DNA MER1_type 6 307 -216 231 258 21 21 chr13 1552956 1553053 -100320116 + L1MC4a LINE L1 7244 7340 -468 488 181 181 0 chr13 1553083 1553188 -100319981 - FLAM_A SINE Alu -9 124 1 1955 142 0 0 chr13 1553215 1553516 -100319653 - AluSx SINE Alu 0 301 1 2284 94 0 7 chr13 1553737 1554024 -100319145 - AluSx SINE Alu -7 305 21 874 195 40 0 chr13 1554030 1554204 -100318965 - L1MC1 LINE L1 -8 6325 6145 311 279 65 35 chr13 1554217 1554418 -100318751 - MER20B DNA MER1_type -62 721 515 817 169 0 22 chr13 1554498 1554634 -100318535 + AluJo SINE Alu 3 135 -177 1306 169 56 91 chr13 1554663 1554983 -100318186 + AluJo SINE Alu 1 309 -3 556 152 4 0 chr13 1555002 1555109 -100318060 + L1M4c LINE L1 2322 2431 -3951 337 226 0 14 chr13 1555131 1555237 -100317932 - L1MCa LINE L1 -1339 6983 2006 2120 104 10 3 chr13 1555238 1555527 -100317642 - AluSq SINE Alu -22 291 1 767 130 26 0 chr13 1555548 1555663 -100317506 - FLAM_C SINE Alu -25 118 1 1844 188 12 22 chr13 1555664 1556069 -100317100 - MER74A LTR ERVL -13 545 145 377 218 16 89 chr13 1556175 1556299 -100316870 - MER74A LTR ERVL -423 135 21 2221 118 0 3 chr13 1556302 1556608 -100316561 + AluSx SINE Alu 1 305 -7 1165 163 105 1 chr13 1556608 1556873 -100316296 + L1MB3 LINE L1 5659 5947 -204 23 0 0 0 chr13 1557025 1557048 -100316121 + AT_rich Low_complexity Low_complexity 1 23 0 2295 82 0 3 chr13 1557048 1557340 -100315829 - AluSq SINE Alu -22 291 1 22 0 0 0 chr13 1557726 1557748 -100315421 + AT_rich Low_complexity Low_complexity 1 22 0 1606 142 85 21 chr13 1557748 1558029 -100315140 - AluJb SINE Alu -13 299 1 278 47 0 0 chr13 1558038 1558081 -100315088 - L1MB3 LINE L1 -2 6181 6139 1107 69 0 0 chr13 1558125 1558256 -100314913 - AluSg SINE Alu -179 131 1 1673 171 13 38 chr13 1558259 1558430 -100314739 - AluJo SINE Alu -4 308 147 2200 126 3 0 chr13 1558430 1558739 -100314430 - AluSq SINE Alu -3 310 1 1673 171 13 38 chr13 1558739 1558883 -100314286 - AluJo SINE Alu -165 147 1 1455 167 9 65 chr13 1558884 1558977 -100314192 - L1MB2 LINE L1 -2 6169 6072 2420 77 3 0 chr13 1558977 1559277 -100313892 - AluSp SINE Alu -11 302 2 1455 167 9 65 chr13 1559277 1559524 -100313645 - L1MB2 LINE L1 -99 6072 5848 1396 203 16 4 chr13 1559536 1559792 -100313377 + AluJo SINE Alu 14 272 -40 2092 76 69 0 chr13 1559838 1560115 -100313054 + AluSg1 SINE Alu 1 296 -13 1231 163 34 0 chr13 1560131 1560364 -100312805 - L1MB2 LINE L1 -329 5854 5614 572 143 50 2 chr13 1560364 1560496 -100312673 + MLT1A2 LTR MaLR 1 151 -214 264 200 33 0 chr13 1560612 1560672 -100312497 - L1MB2 LINE L1 -999 5147 5086 1258 65 7 0 chr13 1560674 1560827 -100312342 - AluY SINE Alu -123 188 35 180 0 0 0 chr13 1560881 1560901 -100312268 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1229 225 51 24 chr13 1560927 1561301 -100311868 - L1MB2 LINE L1 -2405 3741 3358 1943 110 10 30 chr13 1561301 1561600 -100311569 - AluSx SINE Alu -19 293 1 847 187 110 38 chr13 1561705 1561914 -100311255 - MLT2B1 LTR ERVL 0 520 297 197 278 200 0 chr13 1562332 1562422 -100310747 + MIR SINE MIR 150 257 -5 1866 113 64 18 chr13 1562423 1562705 -100310464 - AluSx SINE Alu -17 295 1 422 250 180 8 chr13 1562996 1563124 -100310045 - MER5A DNA MER1_type -6 183 34 593 135 0 11 chr13 1563188 1563277 -100309892 + AluJ/FLAM SINE Alu 4 91 -221 870 145 132 7 chr13 1563278 1563430 -100309739 + AluJb SINE Alu 1 171 -141 1914 161 0 0 chr13 1563430 1563703 -100309466 - AluJo SINE Alu -39 273 1 2287 80 3 3 chr13 1563705 1564004 -100309165 - AluSx SINE Alu -12 300 2 339 82 260 14 chr13 1564026 1564099 -100309070 - HY1 scRNA scRNA -11 101 11 1891 131 35 7 chr13 1564120 1564410 -100308759 - AluJb SINE Alu -14 298 1 1801 128 115 10 chr13 1564472 1564777 -100308392 - MER1B DNA MER1_type 0 337 1 1924 132 7 23 chr13 1565035 1565206 -100307963 - AluSx SINE Alu -7 305 140 1998 121 16 3 chr13 1565206 1565513 -100307656 - AluSq SINE Alu 0 313 3 1924 132 7 23 chr13 1565513 1565651 -100307518 - AluSx SINE Alu -172 140 1 1025 136 7 0 chr13 1566119 1566274 -100306895 - AluSc SINE Alu -18 291 136 425 91 0 0 chr13 1566274 1566329 -100306840 + AluSp/q SINE Alu 235 289 -24 569 152 0 10 chr13 1566452 1566551 -100306618 - AluS SINE Alu -214 99 2 1391 205 32 63 chr13 1566592 1566706 -100306463 + L1MB3 LINE L1 4135 4251 -1895 2161 105 7 0 chr13 1566706 1567012 -100306157 + AluSg SINE Alu 1 308 -2 1391 205 32 63 chr13 1567012 1567165 -100306004 + L1MB3 LINE L1 4251 4385 -1761 2036 108 7 3 chr13 1567165 1567462 -100305707 + AluSx SINE Alu 1 298 -14 1391 205 32 63 chr13 1567462 1567636 -100305533 + L1MB3 LINE L1 4385 4563 -1583 2460 204 12 39 chr13 1567637 1568148 -100305021 - MLT2B2 LTR ERVL -18 497 1 4721 169 28 100 chr13 1568148 1568456 -100304713 + L1MB3 LINE L1 4552 4881 -1302 712 194 0 50 chr13 1568456 1568595 -100304574 - AluJo SINE Alu -176 136 5 4721 169 28 100 chr13 1568595 1569080 -100304089 + L1MB3 LINE L1 4881 5400 -783 2156 98 30 0 chr13 1569080 1569375 -100303794 + AluSq SINE Alu 1 304 -9 4721 169 28 100 chr13 1569375 1569540 -100303629 + L1MB3 LINE L1 5400 5575 -608 2190 108 0 0 chr13 1569540 1569836 -100303333 + AluSx SINE Alu 1 296 -16 4721 169 28 100 chr13 1569836 1570270 -100302899 + L1MB3 LINE L1 5575 5924 -259 1640 180 35 96 chr13 1570270 1570657 -100302512 + MSTB1 LTR MaLR 1 357 -75 2287 45 48 0 chr13 1570657 1570948 -100302221 - AluY SINE Alu -6 305 1 1640 180 35 96 chr13 1570948 1571020 -100302149 + MSTB1 LTR MaLR 357 432 0 4721 169 28 100 chr13 1571020 1571256 -100301913 + L1MB3 LINE L1 5924 6176 -7 2012 119 3 3 chr13 1571270 1571564 -100301605 + AluSx SINE Alu 1 294 -18 1067 89 0 7 chr13 1571565 1571711 -100301458 + AluSq/x SINE Alu 1 145 -167 1246 109 18 68 chr13 1571813 1571968 -100301201 - L1PA16 LINE L1 -189 5977 5835 2261 89 0 0 chr13 1571968 1572271 -100300898 - AluSc SINE Alu -5 304 2 1246 109 18 68 chr13 1572271 1572335 -100300834 - L1PA16 LINE L1 -331 5835 5769 602 175 0 0 chr13 1572336 1572433 -100300736 - U13 snRNA snRNA -7 97 1 2263 140 79 0 chr13 1572434 1572812 -100300357 - L1PA16 LINE L1 -385 5781 5374 675 252 41 49 chr13 1572841 1573087 -100300082 + MLT1D LTR MaLR 1 244 -261 1658 166 43 7 chr13 1573087 1573208 -100299961 + AluJo SINE Alu 1 116 -196 192 40 0 0 chr13 1573208 1573233 -100299936 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1658 166 43 7 chr13 1573233 1573412 -100299757 + AluJo SINE Alu 116 312 0 359 199 82 110 chr13 1573542 1573688 -100299481 - MIR3 SINE MIR -22 186 45 186 167 0 125 chr13 1573690 1573738 -100299431 - MIR SINE MIR -1 261 220 190 289 0 0 chr13 1573851 1573903 -100299266 - MER5A DNA MER1_type -2 187 136 2191 89 0 0 chr13 1573913 1574239 -100298930 + AluSg SINE Alu 1 326 0 1123 248 111 46 chr13 1574254 1574598 -100298571 + L1MC4 LINE L1 7538 7921 -121 1788 154 7 10 chr13 1574598 1574903 -100298266 - AluSx SINE Alu -8 304 1 1123 248 111 46 chr13 1574903 1575018 -100298151 + L1MC4 LINE L1 7921 8027 -15 2059 123 3 0 chr13 1575051 1575351 -100297818 - AluSx SINE Alu -11 301 1 1190 194 8 28 chr13 1575400 1575647 -100297522 + AluJb SINE Alu 58 299 -13 318 326 91 23 chr13 1575694 1575869 -100297300 - L1M4 LINE L1 -3271 2875 2689 705 159 153 32 chr13 1576058 1576215 -100296954 + FRAM SINE Alu 1 40 0 366 305 73 13 chr13 1576231 1576382 -100296787 - L1M4 LINE L1 -3716 2430 2271 524 244 37 0 chr13 1576556 1576691 -100296478 + MLT1F1 LTR MaLR 1 140 -427 2066 97 0 67 chr13 1576693 1577023 -100296146 + AluSx SINE Alu 1 308 -4 397 170 0 20 chr13 1577023 1577123 -100296046 + GA-rich Low_complexity Low_complexity 1 98 0 244 123 0 53 chr13 1577290 1577347 -100295822 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 1619 166 63 0 chr13 1577363 1577647 -100295522 + AluJo SINE Alu 1 302 -10 1344 198 32 8 chr13 1577667 1577920 -100295249 + MLT1F1 LTR MaLR 298 556 -11 1785 141 13 19 chr13 1577982 1578295 -100294874 - AluJb SINE Alu -1 311 1 21 0 0 0 chr13 1578651 1578672 -100294497 + AT_rich Low_complexity Low_complexity 1 21 0 2017 116 0 0 chr13 1578750 1579056 -100294113 + AluSx SINE Alu 1 306 0 842 249 39 55 chr13 1579143 1579558 -100293611 + L1MC5 LINE L1 6571 6919 -889 1582 181 37 10 chr13 1579576 1579875 -100293294 - MER65C LTR ERV1 0 461 155 2198 105 0 0 chr13 1579875 1580171 -100292998 + AluSx SINE Alu 1 296 -16 2265 68 17 0 chr13 1580434 1580728 -100292441 - AluSp SINE Alu -14 299 1 1522 167 17 17 chr13 1580845 1581138 -100292031 + AluJb SINE Alu 13 305 -7 1921 79 64 4 chr13 1581698 1581993 -100291176 + AluSq SINE Alu 1 311 0 1745 148 7 0 chr13 1582403 1582717 -100290452 + AluSq SINE Alu 1 316 0 1695 176 3 3 chr13 1582812 1583113 -100290056 + AluJb SINE Alu 1 301 -11 1734 153 10 3 chr13 1583122 1583417 -100289752 + AluJb SINE Alu 1 297 -15 378 176 47 0 chr13 1583644 1583729 -100289440 - Charlie1a DNA MER1_type -459 996 908 1847 143 7 3 chr13 1583731 1584017 -100289152 + AluSx SINE Alu 3 289 -23 892 201 0 0 chr13 1584031 1584205 -100288964 - FRAM SINE Alu -10 166 1 1547 208 139 47 chr13 1584250 1584847 -100288322 - Charlie1a DNA MER1_type -550 905 254 1215 259 110 77 chr13 1584842 1585503 -100287666 + MER21B LTR ERV1 27 709 -154 * 408 234 341 0 chr13 1585534 1585701 -100287468 - Charlie1a DNA MER1_type -1177 278 55 394 313 145 39 chr13 1585856 1586055 -100287114 - L1ME LINE L1 -375 5746 5569 2007 113 3 3 chr13 1586055 1586347 -100286822 + AluSq SINE Alu 1 292 -21 394 313 145 39 chr13 1586347 1586479 -100286690 - L1ME LINE L1 -552 5569 5380 189 0 0 0 chr13 1586735 1586756 -100286413 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1976 100 3 47 chr13 1586773 1587092 -100286077 + AluSg SINE Alu 3 307 -3 1415 191 3 28 chr13 1587095 1587378 -100285791 - AluJo SINE Alu -36 276 1 1539 243 35 35 chr13 1587378 1587489 -100285680 - L1M4 LINE L1 -3167 3215 3105 2426 54 0 3 chr13 1587489 1587784 -100285385 + AluY SINE Alu 1 294 -17 1539 243 35 35 chr13 1587784 1588245 -100284924 - L1M4 LINE L1 -3276 3106 2643 414 193 58 72 chr13 1588254 1588461 -100284708 - L1M4 LINE L1 -3695 2687 2484 754 179 32 105 chr13 1588575 1588854 -100284315 - L1M4 LINE L1 -3861 2521 2260 350 241 0 0 chr13 1588853 1588932 -100284237 - L1MB2 LINE L1 -163 6008 5930 * 2095 88 7 0 chr13 1588932 1589215 -100283954 - AluSx SINE Alu -15 297 13 2287 77 3 16 chr13 1589232 1589544 -100283625 - AluY SINE Alu -3 308 1 771 90 0 0 chr13 1590207 1590307 -100282862 - AluSp/q SINE Alu -19 294 195 498 290 209 18 chr13 1590344 1590679 -100282490 - HAL1 LINE L1 -2003 504 106 1833 130 3 7 chr13 1590742 1591027 -100282142 - AluJb SINE Alu -7 305 22 1692 161 7 3 chr13 1591127 1591304 -100281865 - AluJo SINE Alu -2 310 135 182 61 0 30 chr13 1591304 1591337 -100281832 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1601 156 18 14 chr13 1591337 1591619 -100281550 - AluJo SINE Alu -29 283 1 1692 161 7 3 chr13 1591619 1591745 -100281424 - AluJo SINE Alu -176 136 5 2495 48 0 0 chr13 1592217 1592526 -100280643 - AluY SINE Alu -2 309 1 970 165 0 12 chr13 1592526 1592682 -100280487 - AluSg/x SINE Alu -15 295 140 2115 107 3 0 chr13 1592691 1592982 -100280187 - AluSp SINE Alu -11 302 11 297 285 146 18 chr13 1592991 1593156 -100280013 - MIR SINE MIR -1 261 76 2251 75 0 22 chr13 1593303 1593621 -100279548 - AluY SINE Alu 0 311 1 1844 80 109 4 chr13 1593632 1593906 -100279263 - AluSg SINE Alu -7 303 1 2241 91 3 0 chr13 1594462 1594759 -100278410 - AluY SINE Alu -13 298 1 504 216 78 44 chr13 1595296 1595322 -100277847 + L1 LINE L1 3155 3179 -2967 2214 103 0 3 chr13 1595322 1595633 -100277536 + AluSx SINE Alu 1 310 -2 504 216 78 44 chr13 1595633 1595811 -100277358 + L1 LINE L1 3179 3366 -2780 2010 112 7 13 chr13 1595812 1596117 -100277052 + AluSg SINE Alu 1 303 -7 2188 76 0 14 chr13 1596250 1596572 -100276597 + AluY SINE Alu 1 318 0 562 130 0 0 chr13 1596584 1596661 -100276508 + AluJ/FLAM SINE Alu 3 79 -233 1175 145 0 0 chr13 1597120 1597299 -100275870 - AluSg/x SINE Alu -1 309 131 2529 55 0 0 chr13 1597299 1597610 -100275559 - AluY SINE Alu 0 311 1 1713 175 0 9 chr13 1597821 1598136 -100275033 + AluJb SINE Alu 1 312 0 2122 114 7 0 chr13 1598178 1598476 -100274693 + AluSq SINE Alu 1 300 -13 502 278 40 30 chr13 1598510 1598754 -100274415 + L2 LINE L2 1988 2303 -1011 2024 113 7 3 chr13 1598825 1599116 -100274053 + AluSx SINE Alu 1 292 -20 959 99 106 7 chr13 1599122 1599273 -100273896 + MER51B LTR ERV1 212 377 0 266 86 0 0 chr13 1599273 1599308 -100273861 + MER51B-int LTR ERV1 1 35 -7781 * 463 127 0 0 chr13 1599300 1599371 -100273798 + MER51-int LTR ERV1 3130 3200 -4616 2016 101 21 3 chr13 1599379 1599665 -100273504 - AluSg SINE Alu -19 291 1 291 93 0 0 chr13 1599667 1599710 -100273459 + MER51-int LTR ERV1 6086 6128 -1688 1371 117 5 5 chr13 1599719 1599933 -100273236 + AluY SINE Alu 2 215 -96 2174 180 99 61 chr13 1600044 1600074 -100273095 - LTR12 LTR ERV1 -199 515 488 1278 172 20 24 chr13 1600074 1600371 -100272798 + AluY SINE Alu 1 296 -15 2174 180 99 61 chr13 1600371 1600922 -100272247 - LTR12 LTR ERV1 -226 488 1 844 187 0 26 chr13 1600922 1601077 -100272092 + AluJb SINE Alu 150 300 -12 1882 118 7 29 chr13 1601339 1601645 -100271524 + AluSq SINE Alu 1 299 -14 377 229 0 95 chr13 1601645 1601744 -100271425 + L1MC4 LINE L1 6615 6703 -1339 194 170 0 21 chr13 1601747 1601794 -100271375 + (TA)n Simple_repeat Simple_repeat 1 46 0 602 234 54 36 chr13 1601882 1601934 -100271235 - MER45A DNA AcHobo -1411 170 120 2333 84 7 0 chr13 1601934 1602244 -100270925 - AluSp SINE Alu 0 313 2 602 234 54 36 chr13 1602244 1602358 -100270811 - MER45A DNA AcHobo -1461 120 1 1742 149 0 40 chr13 1602421 1602744 -100270425 - AluSx SINE Alu -2 310 1 881 210 46 50 chr13 1602744 1603025 -100270144 - L1MC5 LINE L1 -528 7433 7154 1596 90 9 0 chr13 1603029 1603251 -100269918 + AluSq SINE Alu 1 224 -89 1054 148 6 0 chr13 1603357 1603526 -100269643 - AluSg/x SINE Alu -11 301 132 315 263 114 57 chr13 1603526 1603701 -100269468 - MIR SINE MIR -72 190 6 1532 95 26 35 chr13 1604235 1604467 -100268702 - MER30 DNA MER1_type 0 230 1 25 75 0 0 chr13 1606372 1606425 -100266744 + GC_rich Low_complexity Low_complexity 1 53 0 1681 157 17 27 chr13 1608146 1608439 -100264730 + AluJb SINE Alu 1 290 -22 831 206 6 6 chr13 1608453 1608613 -100264556 + FRAM SINE Alu 2 161 -5 252 0 0 0 chr13 1608634 1608662 -100264507 + (CA)n Simple_repeat Simple_repeat 2 29 0 464 286 24 16 chr13 1608734 1608860 -100264309 - HAL1 LINE L1 -1342 1165 1039 2179 105 0 0 chr13 1608860 1609154 -100264015 + AluSx SINE Alu 1 294 -18 1462 186 14 18 chr13 1609154 1609433 -100263736 - MER65C LTR ERV1 -183 278 1 459 253 74 32 chr13 1609446 1609501 -100263668 + Charlie1a DNA MER1_type 103 154 -2607 1987 131 7 3 chr13 1609501 1609806 -100263363 + AluSx SINE Alu 1 306 -6 459 253 74 32 chr13 1609806 1609940 -100263229 + Charlie1a DNA MER1_type 154 300 -1155 2146 97 0 13 chr13 1609941 1610239 -100262930 + AluSc SINE Alu 1 294 -15 2119 99 3 3 chr13 1610239 1610531 -100262638 + AluSp SINE Alu 1 292 -21 201 195 0 0 chr13 1610602 1610643 -100262526 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 359 177 16 0 chr13 1610643 1610705 -100262464 + Charlie1a DNA MER1_type 351 413 -1042 1955 105 54 0 chr13 1610705 1611000 -100262169 + AluSx SINE Alu 1 311 -1 812 160 0 0 chr13 1611000 1611125 -100262044 - AluJo/FLAM SINE Alu -175 127 3 513 155 21 10 chr13 1611125 1611222 -100261947 - LTR56 LTR ERV1 -303 142 45 1258 148 6 107 chr13 1611223 1611454 -100261715 - AluJo SINE Alu 0 312 124 2258 87 0 0 chr13 1611454 1611752 -100261417 + AluY SINE Alu 1 298 -13 1258 148 6 107 chr13 1611752 1611857 -100261312 - AluJo SINE Alu -188 124 10 296 65 0 43 chr13 1611872 1611918 -100261251 - LTR56 LTR ERV1 -394 51 8 305 181 24 60 chr13 1611920 1612003 -100261166 - MER21B LTR ERV1 -655 208 129 277 203 29 58 chr13 1612066 1612135 -100261034 - MER21B LTR ERV1 -755 108 42 566 171 9 9 chr13 1612149 1612254 -100260915 + FRAM SINE Alu 20 124 -52 207 88 0 0 chr13 1612270 1612304 -100260865 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 254 254 45 37 chr13 1612362 1612496 -100260673 - L1MEd LINE L1 -5981 138 4 1269 168 10 69 chr13 1612523 1612642 -100260527 + AluJb SINE Alu 1 125 -187 1926 131 3 7 chr13 1612642 1612947 -100260222 + AluSg SINE Alu 1 304 -6 1269 168 10 69 chr13 1612947 1612981 -100260188 + AluJb SINE Alu 125 159 -153 2149 104 7 0 chr13 1612981 1613278 -100259891 + AluSp SINE Alu 1 299 -14 786 192 7 13 chr13 1613278 1613429 -100259740 + AluJb SINE Alu 139 288 -24 1269 168 10 69 chr13 1613278 1613427 -100259742 + AluJb SINE Alu 159 286 -26 23 33 0 0 chr13 1613493 1613523 -100259646 + AT_rich Low_complexity Low_complexity 1 30 0 384 257 119 38 chr13 1613527 1613719 -100259450 - L2 LINE L2 -639 2675 2463 2171 73 0 14 chr13 1613719 1614005 -100259164 + AluY SINE Alu 1 282 -29 384 257 119 38 chr13 1614005 1614022 -100259147 - L2 LINE L2 -851 2463 2449 300 226 89 8 chr13 1614158 1614282 -100258887 + AluSq/x SINE Alu 3 136 -166 1565 183 0 14 chr13 1614587 1614882 -100258287 + AluJo SINE Alu 1 291 -21 261 287 136 10 chr13 1614892 1615053 -100258116 + MIR SINE MIR 44 230 -32 198 0 0 0 chr13 1615714 1615736 -100257433 + (ATG)n Simple_repeat Simple_repeat 1 22 0 1907 122 0 34 chr13 1616486 1616813 -100256356 - AluSq SINE Alu 0 317 1 32 26 0 0 chr13 1617027 1617066 -100256103 + AT_rich Low_complexity Low_complexity 1 39 0 1868 119 3 11 chr13 1617111 1617423 -100255746 - AluSq SINE Alu 0 310 1 1849 161 51 106 chr13 1617563 1617672 -100255497 - MER67A LTR ERV1 0 543 430 1363 174 51 11 chr13 1617672 1617947 -100255222 + AluJo SINE Alu 1 286 -26 1849 161 51 106 chr13 1617947 1617959 -100255210 - MER67A LTR ERV1 -113 430 419 1939 107 3 17 chr13 1617959 1618094 -100255075 + AluSx SINE Alu 3 138 -174 2188 113 3 0 chr13 1618094 1618405 -100254764 + AluSp SINE Alu 1 312 -1 1939 107 3 17 chr13 1618405 1618558 -100254611 + AluSx SINE Alu 138 287 -25 2109 95 3 29 chr13 1618559 1618874 -100254295 + AluSg SINE Alu 1 307 -3 1849 161 51 106 chr13 1618874 1619220 -100253949 - MER67A LTR ERV1 -123 420 99 2019 122 6 10 chr13 1619220 1619532 -100253637 + AluSx SINE Alu 1 311 -1 1087 151 0 0 chr13 1619532 1619698 -100253471 + AluSg/x SINE Alu 124 289 -21 1836 160 0 10 chr13 1619709 1620022 -100253147 + AluJo SINE Alu 1 310 -2 183 42 0 0 chr13 1620077 1620101 -100253068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1859 85 0 0 chr13 1620103 1620338 -100252831 - AluSg SINE Alu -75 235 1 2156 103 7 0 chr13 1620396 1620696 -100252473 - AluSp SINE Alu -11 302 1 1248 95 0 0 chr13 1620698 1620866 -100252303 - AluSg/x SINE Alu -10 302 135 3609 81 35 2 chr13 1621093 1621577 -100251592 - LTR3b LTR ERVK 0 500 1 1850 134 0 7 chr13 1622574 1622872 -100250297 + AluSx SINE Alu 14 309 -3 1085 114 0 13 chr13 1622872 1623061 -100250108 + AluSg/x SINE Alu 134 312 0 2043 120 3 0 chr13 1623073 1623374 -100249795 + AluSq SINE Alu 1 302 -11 2154 69 7 7 chr13 1623874 1624165 -100249004 - AluY SINE Alu -20 291 1 387 247 116 37 chr13 1624167 1624357 -100248812 + L2 LINE L2 2471 2675 -639 23 33 0 0 chr13 1624361 1624391 -100248778 + AT_rich Low_complexity Low_complexity 1 30 0 1269 168 10 69 chr13 1624457 1624606 -100248563 - AluJb SINE Alu -26 286 130 2149 104 7 0 chr13 1624606 1624903 -100248266 - AluSp SINE Alu -14 299 1 1269 168 10 69 chr13 1624903 1624937 -100248232 - AluJb SINE Alu -182 130 96 1926 131 3 7 chr13 1624937 1625242 -100247927 - AluSg SINE Alu -6 304 1 1269 168 10 69 chr13 1625242 1625361 -100247808 - AluJb SINE Alu -216 96 1 254 254 45 37 chr13 1625388 1625522 -100247647 + L1MEd LINE L1 4 138 -5981 207 88 0 0 chr13 1625580 1625614 -100247555 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 566 171 9 9 chr13 1625630 1625735 -100247434 - FRAM SINE Alu -52 124 20 277 203 29 58 chr13 1625749 1625818 -100247351 + MER21B LTR ERV1 42 108 -755 305 181 24 60 chr13 1625881 1625964 -100247205 + MER21B LTR ERV1 129 208 -655 296 65 0 43 chr13 1625966 1626012 -100247157 + LTR56 LTR ERV1 8 51 -394 1258 148 6 107 chr13 1626027 1626132 -100247037 + AluJo SINE Alu 10 124 -188 2258 87 0 0 chr13 1626132 1626430 -100246739 - AluY SINE Alu -13 298 1 1258 148 6 107 chr13 1626430 1626661 -100246508 + AluJo SINE Alu 124 312 0 513 155 21 10 chr13 1626662 1626759 -100246410 + LTR56 LTR ERV1 45 142 -303 820 154 0 0 chr13 1626759 1626882 -100246287 + AluJo/FLAM SINE Alu 3 125 -187 2144 120 0 7 chr13 1626884 1627192 -100245977 - AluSx SINE Alu -1 311 6 1215 97 16 3 chr13 1627200 1627393 -100245776 + LTR56 LTR ERV1 270 437 0 2055 103 13 17 chr13 1627459 1627761 -100245408 + AluSx SINE Alu 1 301 -11 640 254 53 37 chr13 1627776 1627965 -100245204 + MER21B LTR ERV1 321 512 -351 1920 142 17 0 chr13 1627965 1628261 -100244908 - AluSx SINE Alu -11 301 1 207 0 0 0 chr13 1628263 1628286 -100244883 + (T)n Simple_repeat Simple_repeat 1 23 0 765 210 0 0 chr13 1628292 1628430 -100244739 + FRAM SINE Alu 3 140 -36 572 186 108 44 chr13 1628451 1628782 -100244387 - MER39 LTR ERV1 -262 445 4 2289 87 10 0 chr13 1628913 1629246 -100243923 + AluSp SINE Alu 1 336 0 2087 183 70 47 chr13 1629272 1629314 -100243855 - MER31A LTR ERV1 -4 481 441 2195 76 10 16 chr13 1629314 1629628 -100243541 + AluSx SINE Alu 1 312 0 2087 183 70 47 chr13 1629628 1630055 -100243114 - MER31A LTR ERV1 -44 441 1 375 275 72 62 chr13 1630077 1630270 -100242899 + L1MEd LINE L1 694 888 -5231 390 156 12 0 chr13 1630270 1630344 -100242825 + L1 LINE L1 5180 5259 -887 1951 119 3 7 chr13 1630348 1630641 -100242528 - AluSq SINE Alu -21 292 1 315 118 29 59 chr13 1630682 1630732 -100242437 + L1M LINE L1 5258 5307 -871 868 146 0 8 chr13 1630732 1630862 -100242307 + FLAM_C SINE Alu 1 129 -4 315 118 29 59 chr13 1630862 1630879 -100242290 + L1M LINE L1 5307 5323 -855 1602 173 3 22 chr13 1630879 1631197 -100241972 + AluSx SINE Alu 1 312 0 475 130 0 0 chr13 1631225 1631294 -100241875 + AluS SINE Alu 2 70 -242 2109 100 43 0 chr13 1631676 1631975 -100241194 + AluSx SINE Alu 1 312 0 338 97 0 32 chr13 1631977 1632039 -100241130 + L1PA16 LINE L1 6098 6157 -9 711 219 20 13 chr13 1632397 1632548 -100240621 + FRAM SINE Alu 11 162 -14 545 230 40 8 chr13 1632599 1632725 -100240444 + FLAM_A SINE Alu 1 130 -3 2267 91 0 0 chr13 1632872 1633169 -100240000 + AluSx SINE Alu 1 297 -15 1585 194 3 13 chr13 1633701 1634010 -100239159 + AluJo SINE Alu 1 306 -6 1683 164 21 0 chr13 1634014 1634301 -100238868 + AluSx SINE Alu 4 296 -16 324 176 44 15 chr13 1634340 1634408 -100238761 - L1ME LINE L1 -603 5561 5492 840 145 0 0 chr13 1634409 1634540 -100238629 + FLAM_C SINE Alu 2 132 -1 364 163 90 14 chr13 1634564 1634677 -100238492 - L1ME LINE L1 -801 5345 5227 810 144 0 85 chr13 1634681 1634717 -100238452 - FLAM_C SINE Alu -171 141 104 2112 99 7 10 chr13 1634717 1635020 -100238149 + AluSq SINE Alu 1 302 -11 810 144 0 85 chr13 1635020 1635136 -100238033 - FLAM_C SINE Alu -208 104 2 783 202 31 73 chr13 1635139 1635426 -100237743 - L1ME LINE L1 -918 5228 4954 616 267 107 21 chr13 1635439 1635720 -100237449 + L1M4 LINE L1 4726 5030 -1116 1113 193 148 37 chr13 1635963 1636233 -100236936 + AluJo SINE Alu 3 302 0 2035 123 3 0 chr13 1636369 1636669 -100236500 + AluSx SINE Alu 1 301 -11 2144 96 0 7 chr13 1636837 1637138 -100236031 + AluSx SINE Alu 1 299 -13 2050 90 43 13 chr13 1637289 1637589 -100235580 - AluSx SINE Alu -3 309 1 1809 158 7 0 chr13 1637683 1637975 -100235194 + AluJb SINE Alu 5 298 -14 2188 78 41 0 chr13 1637977 1638270 -100234899 + AluY SINE Alu 1 305 -6 1509 122 95 8 chr13 1638293 1638555 -100234614 + AluSg SINE Alu 1 285 -25 922 191 0 0 chr13 1638562 1638724 -100234445 + AluJb SINE Alu 134 295 -17 895 194 56 6 chr13 1638954 1639134 -100234035 + MER20 DNA MER1_type 1 189 -30 436 247 37 74 chr13 1639147 1639337 -100233832 + HAL1 LINE L1 2194 2376 -131 828 233 18 0 chr13 1639345 1639508 -100233661 + FAM SINE Alu 1 166 -9 1584 153 21 28 chr13 1639514 1639801 -100233368 + AluJb SINE Alu 2 286 -26 32 57 0 0 chr13 1639801 1639854 -100233315 + AT_rich Low_complexity Low_complexity 1 53 0 309 241 86 69 chr13 1639854 1639970 -100233199 + HAL1 LINE L1 2367 2484 -23 807 167 48 12 chr13 1639974 1640142 -100233027 - AluJb SINE Alu -4 308 135 484 149 11 23 chr13 1640142 1640229 -100232940 - Tigger3(Golem) DNA MER2_type -2931 98 13 738 318 82 23 chr13 1640240 1640583 -100232586 + L2 LINE L2 2371 2733 -581 2259 77 0 0 chr13 1640627 1640912 -100232257 - AluSx SINE Alu -27 285 1 2361 45 41 0 chr13 1641062 1641354 -100231815 - AluY SINE Alu -7 304 1 23 68 0 0 chr13 1641369 1641413 -100231756 + AT_rich Low_complexity Low_complexity 1 44 0 249 100 60 0 chr13 1641898 1641948 -100231221 - L1MB7 LINE L1 0 6184 6132 * 1902 191 66 41 chr13 1641943 1642328 -100230841 - L1MB8 LINE L1 -104 6074 5673 2071 96 0 13 chr13 1642328 1642629 -100230540 - AluSg1 SINE Alu -12 297 1 1902 191 66 41 chr13 1642629 1642726 -100230443 - L1MB8 LINE L1 -505 5673 5580 1150 123 22 0 chr13 1642731 1642910 -100230259 - AluSg/x SINE Alu -9 301 119 619 141 106 173 chr13 1642929 1643027 -100230142 - L1MB8 LINE L1 -587 5597 5494 1774 160 0 19 chr13 1643027 1643345 -100229824 - AluSx SINE Alu 0 312 1 619 141 106 173 chr13 1643345 1643429 -100229740 - L1MB8 LINE L1 -690 5494 5434 2083 125 0 6 chr13 1643429 1643741 -100229428 - AluSx SINE Alu -2 310 1 619 141 106 173 chr13 1643741 1643812 -100229357 - L1MB8 LINE L1 -750 5434 5360 2072 122 0 0 chr13 1644965 1645261 -100227908 + AluSx SINE Alu 1 296 -16 31 26 0 0 chr13 1645579 1645617 -100227552 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 1645791 1645813 -100227356 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 1645974 1645995 -100227174 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 740 179 8 0 chr13 1645999 1646116 -100227053 - FLAM_C SINE Alu -15 118 1 1939 138 3 0 chr13 1646289 1646587 -100226582 + AluSx SINE Alu 1 299 -13 535 248 24 0 chr13 1646934 1647059 -100226110 + FLAM_A SINE Alu 2 129 -4 2025 90 57 13 chr13 1647118 1647438 -100225731 - AluSq SINE Alu 0 313 1 1859 148 3 0 chr13 1647473 1647763 -100225406 + AluSc SINE Alu 1 291 -18 1924 132 7 23 chr13 1648231 1648369 -100224800 + AluSx SINE Alu 1 140 -172 1998 121 16 3 chr13 1648369 1648676 -100224493 + AluSq SINE Alu 3 313 0 1924 132 7 23 chr13 1648676 1648847 -100224322 + AluSx SINE Alu 140 305 -7 1801 128 115 10 chr13 1649105 1649410 -100223759 + MER1B DNA MER1_type 1 337 0 1891 131 35 7 chr13 1649472 1649762 -100223407 + AluJb SINE Alu 1 298 -14 339 82 260 14 chr13 1649783 1649856 -100223313 + HY1 scRNA scRNA 11 101 -11 2227 93 3 13 chr13 1649878 1650188 -100222981 + AluSq SINE Alu 2 308 -5 3609 81 35 2 chr13 1651281 1651765 -100221404 + LTR3b LTR ERVK 1 500 0 1248 95 0 0 chr13 1651992 1652160 -100221009 + AluSg/x SINE Alu 135 302 -10 2156 103 7 0 chr13 1652162 1652462 -100220707 + AluSp SINE Alu 1 302 -11 1859 85 0 0 chr13 1652520 1652755 -100220414 + AluSg SINE Alu 1 235 -75 183 42 0 0 chr13 1652757 1652781 -100220388 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1836 160 0 10 chr13 1652836 1653149 -100220020 - AluJo SINE Alu -2 310 1 1087 151 0 0 chr13 1653160 1653326 -100219843 - AluSg/x SINE Alu -21 291 126 2019 122 6 10 chr13 1653326 1653638 -100219531 - AluSx SINE Alu -1 311 1 1849 161 51 106 chr13 1653638 1653984 -100219185 + MER67A LTR ERV1 99 463 -80 2109 95 3 29 chr13 1653984 1654299 -100218870 - AluSg SINE Alu -3 307 1 1939 107 3 17 chr13 1654300 1654453 -100218716 - AluSx SINE Alu -25 287 138 2188 113 3 0 chr13 1654453 1654764 -100218405 - AluSp SINE Alu -1 312 1 1939 107 3 17 chr13 1654764 1654899 -100218270 - AluSx SINE Alu -174 138 3 1849 161 51 106 chr13 1654899 1654911 -100218258 + MER67A LTR ERV1 463 474 -69 1363 174 51 11 chr13 1654911 1655186 -100217983 - AluJo SINE Alu -26 286 1 1849 161 51 106 chr13 1655186 1655295 -100217874 + MER67A LTR ERV1 474 543 0 2106 122 0 28 chr13 1655435 1655572 -100217597 + AluSx SINE Alu 1 140 -172 2251 94 0 3 chr13 1655572 1655881 -100217288 + AluSg SINE Alu 1 308 -2 2477 64 0 0 chr13 1655883 1656194 -100216975 + AluY SINE Alu 1 311 0 2106 122 0 28 chr13 1656194 1656373 -100216796 + AluSx SINE Alu 141 311 -1 559 317 107 7 chr13 1656376 1656676 -100216493 + L1MEc LINE L1 100 429 -5967 1865 123 0 60 chr13 1656679 1656857 -100216312 - AluSx SINE Alu -15 297 145 1972 127 0 16 chr13 1656857 1657164 -100216005 - AluSx SINE Alu -10 302 1 1865 123 0 60 chr13 1657164 1657301 -100215868 - AluSx SINE Alu -167 145 1 888 226 147 55 chr13 1657306 1657698 -100215471 + MER57A LTR ERV1 1 401 -2 679 276 50 40 chr13 1657917 1658010 -100215159 + Charlie1a DNA MER1_type 1 92 -2669 2315 167 17 32 chr13 1658010 1658198 -100214971 - MER65C LTR ERV1 0 461 272 2283 82 0 0 chr13 1658198 1658490 -100214679 + AluY SINE Alu 2 293 -18 2315 167 17 32 chr13 1658490 1658769 -100214400 - MER65C LTR ERV1 -189 272 1 679 276 50 40 chr13 1658769 1658837 -100214332 + Charlie1a DNA MER1_type 92 158 -2603 1987 131 7 3 chr13 1658837 1659142 -100214027 + AluSx SINE Alu 1 306 -6 679 276 50 40 chr13 1659142 1659276 -100213893 + Charlie1a DNA MER1_type 158 300 -1155 2146 97 0 13 chr13 1659277 1659575 -100213594 + AluSc SINE Alu 1 294 -15 2119 99 3 3 chr13 1659575 1659867 -100213302 + AluSp SINE Alu 1 292 -21 201 195 0 0 chr13 1659938 1659979 -100213190 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 1870 170 19 43 chr13 1659979 1660041 -100213128 + Charlie1a DNA MER1_type 351 413 -2348 1952 103 55 0 chr13 1660041 1660333 -100212836 + AluSx SINE Alu 1 308 -4 1870 170 19 43 chr13 1660333 1660641 -100212528 + Charlie1a DNA MER1_type 413 712 -743 809 158 0 0 chr13 1660641 1660768 -100212401 + FLAM_C SINE Alu 1 127 -16 1185 156 15 65 chr13 1660874 1660955 -100212214 - L1M3 LINE L1 -455 5728 5645 2341 129 36 80 chr13 1660955 1661403 -100211766 + MSTC LTR MaLR 1 428 0 1185 156 15 65 chr13 1661403 1661584 -100211585 - L1M3 LINE L1 -538 5645 5479 1864 119 51 0 chr13 1661622 1661916 -100211253 - AluSq SINE Alu -4 309 1 1929 147 0 69 chr13 1661946 1662083 -100211086 + MER47A DNA MER2_type 32 177 -2146 1962 128 17 3 chr13 1662083 1662379 -100210790 + AluSq SINE Alu 1 300 -13 1929 147 0 69 chr13 1662379 1662601 -100210568 + MER47A DNA MER2_type 177 366 0 324 146 0 0 chr13 1662625 1662673 -100210496 - L1M3 LINE L1 -704 5467 5420 * 356 243 38 84 chr13 1662668 1662787 -100210382 - L1M4c LINE L1 -4226 2158 2035 428 192 211 19 chr13 1662787 1662891 -100210278 + FLAM_A SINE Alu 1 124 -9 356 243 38 84 chr13 1662891 1662948 -100210221 - L1M4c LINE L1 -4349 2035 1977 2004 115 0 7 chr13 1662948 1663267 -100209902 - AluSx SINE Alu 0 319 3 356 243 38 84 chr13 1663267 1663400 -100209769 - L1M4c LINE L1 -4407 1977 1768 318 83 0 21 chr13 1663496 1663544 -100209625 - Alu SINE Alu -222 78 32 1613 186 25 74 chr13 1863671 1863837 -100009332 + MLT1A2 LTR MaLR 1 173 -201 2090 129 10 3 chr13 1863837 1864132 -100009037 + AluSx SINE Alu 1 297 -15 1613 186 25 74 chr13 1864132 1864329 -100008840 + MLT1A2 LTR MaLR 173 346 -28 278 25 0 25 chr13 1864329 1864369 -100008800 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1613 186 25 74 chr13 1864369 1864397 -100008772 + MLT1A2 LTR MaLR 346 374 0 1860 151 6 28 chr13 1864403 1864722 -100008447 - AluJo SINE Alu 0 312 1 332 329 70 35 chr13 1864730 1864958 -100008211 - L1M4 LINE L1 -3568 2578 2343 939 288 22 38 chr13 1865011 1865327 -100007842 - LTR16A LTR ERVL -32 418 108 22 0 0 0 chr13 1865487 1865509 -100007660 + AT_rich Low_complexity Low_complexity 1 22 0 2153 115 3 0 chr13 1865641 1865929 -100007240 - AluSg SINE Alu -21 289 1 2310 115 0 0 chr13 1866226 1866538 -100006631 - AluSx SINE Alu 0 312 1 2001 137 3 10 chr13 1866602 1866908 -100006261 - AluSx SINE Alu -8 304 1 946 164 55 6 chr13 1866911 1867034 -100006135 - L1M3 LINE L1 -560 5611 5475 207 0 0 0 chr13 1867034 1867057 -100006112 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 164 55 6 chr13 1867057 1867116 -100006053 - L1M3 LINE L1 -696 5475 5420 725 179 17 0 chr13 1867116 1867233 -100005936 - AluSg/x SINE Alu -9 303 185 2200 99 7 0 chr13 1867911 1868219 -100004950 + AluSq SINE Alu 1 310 0 33 66 0 0 chr13 1868535 1868596 -100004573 + AT_rich Low_complexity Low_complexity 1 61 0 1797 98 70 35 chr13 1868624 1868909 -100004260 - AluSg SINE Alu -15 295 1 803 100 0 50 chr13 1868928 1869048 -100004121 - AluSg/x SINE Alu -11 301 188 35 0 0 0 chr13 1869077 1869112 -100004057 + AT_rich Low_complexity Low_complexity 1 35 0 4839 36 0 23 chr13 1869112 1869687 -100003482 - L1PA4 LINE L1 -3 6152 5591 2043 106 39 7 chr13 1869696 1869979 -100003190 + AluSx SINE Alu 1 292 -20 1527 142 138 87 chr13 1870040 1870492 -100002677 + LTR54B LTR ERV1 1 479 -19 2512 76 0 0 chr13 1870492 1870795 -100002374 - AluSx SINE Alu -9 303 1 1527 142 138 87 chr13 1870795 1870814 -100002355 + LTR54B LTR ERV1 479 496 -2 24 53 0 0 chr13 1870837 1870875 -100002294 + AT_rich Low_complexity Low_complexity 1 38 0 489 273 8 8 chr13 1871241 1871373 -100001796 - MIR SINE MIR -15 247 116 254 326 31 8 chr13 1871391 1871520 -100001649 + L1MC4a LINE L1 5793 5924 -1884 1857 160 20 0 chr13 1872499 1872805 -100000364 + AluSx SINE Alu 1 312 0 935 286 54 27 chr13 1872819 1873189 -99999980 - MER93a LTR ERV1 -4 398 19 1446 185 15 59 chr13 1873192 1873516 -99999653 - AluJo SINE Alu -2 310 1 918 213 81 52 chr13 1873527 1873935 -99999234 + Charlie2 DNA MER1_type 2235 2654 -208 1439 171 0 28 chr13 1873938 1874190 -99998979 + AluJo SINE Alu 47 291 -21 876 249 95 21 chr13 1874208 1874411 -99998758 - Charlie2 DNA MER1_type -639 2223 1984 1802 211 32 51 chr13 1874411 1874884 -99998285 - MLT1C LTR MaLR -3 464 1 876 249 95 21 chr13 1874884 1875017 -99998152 - Charlie2 DNA MER1_type -878 1984 1862 498 264 218 0 chr13 1875029 1875245 -99997924 - Charlie2 DNA MER1_type -2540 322 60 278 258 89 16 chr13 1875851 1875975 -99997194 + L1MC4a LINE L1 5765 5897 -1911 2160 115 0 3 chr13 1876147 1876442 -99996727 - AluSx SINE Alu -18 294 1 221 188 29 29 chr13 1876458 1876527 -99996642 + A-rich Low_complexity Low_complexity 4 72 0 1918 140 0 0 chr13 1876743 1877014 -99996155 - AluSx SINE Alu -32 280 10 21 0 0 0 chr13 1877181 1877202 -99995967 + AT_rich Low_complexity Low_complexity 1 21 0 1705 93 0 25 chr13 1877215 1877451 -99995718 + AluSp SINE Alu 84 313 0 528 293 77 34 chr13 1877541 1877838 -99995331 + L2 LINE L2 2551 2860 -454 474 350 79 18 chr13 1877931 1878208 -99994961 + L2 LINE L2 3019 3312 -1 2336 55 0 61 chr13 1878487 1878831 -99994338 - AluY SINE Alu 0 311 1 2132 107 6 31 chr13 1878923 1879135 -99994034 - AluSq SINE Alu -4 309 106 234 0 0 0 chr13 1879135 1879161 -99994008 + (CTAGG)n Simple_repeat Simple_repeat 4 29 0 2132 107 6 31 chr13 1879161 1879265 -99993904 - AluSq SINE Alu -207 106 1 3405 150 14 12 chr13 1879511 1880085 -99993084 + L1MC1 LINE L1 5428 6002 -331 1247 158 27 18 chr13 1880111 1880333 -99992836 + L1MC1 LINE L1 6104 6327 -6 216 0 0 0 chr13 1880432 1880456 -99992713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1501 155 22 43 chr13 1880484 1880599 -99992570 + AluJb SINE Alu 26 142 -170 2176 114 6 19 chr13 1880599 1880915 -99992254 + AluSx SINE Alu 1 312 0 1501 155 22 43 chr13 1880915 1881076 -99992093 + AluJb SINE Alu 142 296 -16 2189 116 7 0 chr13 1881078 1881380 -99991789 + AluSg SINE Alu 1 304 -6 340 118 29 15 chr13 1881399 1881467 -99991702 + GA-rich Low_complexity Low_complexity 4 72 0 1033 168 0 53 chr13 1881467 1881657 -99991512 + AluJo SINE Alu 6 185 -127 37 0 0 0 chr13 1881657 1881694 -99991475 + AT_rich Low_complexity Low_complexity 1 37 0 2302 181 18 2 chr13 1881817 1882214 -99990955 + MER57A LTR ERV1 1 403 0 204 295 16 0 chr13 1882279 1882340 -99990829 - MIR3 SINE MIR -3 205 144 1290 110 53 57 chr13 1882377 1882605 -99990564 - MER30 DNA MER1_type 0 230 4 4597 151 49 21 chr13 1882668 1882879 -99990290 + L1MA8 LINE L1 5107 5311 -980 1826 148 0 40 chr13 1882879 1883183 -99989986 + AluSx SINE Alu 1 292 -20 4597 151 49 21 chr13 1883183 1883194 -99989975 + L1MA8 LINE L1 5311 5320 -971 4597 137 32 30 chr13 1883194 1884002 -99989167 + L1MA8 LINE L1 5480 6289 -2 4597 151 49 21 chr13 1884002 1884023 -99989146 + L1MA8 LINE L1 5320 6289 -2 247 263 102 68 chr13 1884234 1884317 -99988852 - MIR3 SINE MIR -30 178 88 1443 201 110 48 chr13 1884317 1884690 -99988479 + MSTD LTR MaLR 1 396 0 247 263 102 68 chr13 1884690 1884724 -99988445 - MIR3 SINE MIR -120 88 57 2508 75 0 3 chr13 1884874 1885179 -99987990 + AluSc SINE Alu 1 304 -5 531 201 56 153 chr13 1885278 1885566 -99987603 - MER112 DNA MER1_type 0 260 1 2408 52 42 0 chr13 1885598 1885887 -99987282 - AluY SINE Alu -10 301 1 209 204 20 20 chr13 1885961 1886010 -99987159 + MIR SINE MIR 4 52 -210 2036 144 3 3 chr13 1886285 1886583 -99986586 - AluSx SINE Alu -14 298 1 270 0 0 0 chr13 1886610 1886640 -99986529 + (TTA)n Simple_repeat Simple_repeat 2 31 0 513 278 37 53 chr13 1886743 1886988 -99986181 - MIR SINE MIR 0 262 22 1217 84 0 0 chr13 1887102 1887257 -99985912 - AluSg/x SINE Alu -21 289 135 184 260 20 0 chr13 1887269 1887319 -99985850 - MIR SINE MIR -110 152 102 2393 170 46 11 chr13 1887456 1887915 -99985254 - L1MB7 LINE L1 -16 6168 5694 21 82 0 0 chr13 1889775 1889824 -99983345 + GC_rich Low_complexity Low_complexity 1 49 0 209 221 47 35 chr13 1889932 1890018 -99983151 + G-rich Low_complexity Low_complexity 4 90 0 24 67 0 0 chr13 1890142 1890187 -99982982 + GC_rich Low_complexity Low_complexity 1 45 0 213 185 83 28 chr13 1890661 1890769 -99982400 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 * 223 167 61 0 chr13 1890714 1890780 -99982389 + (CGG)n Simple_repeat Simple_repeat 1 70 0 24 32 0 0 chr13 1890812 1890843 -99982326 + GC_rich Low_complexity Low_complexity 1 31 0 313 229 46 37 chr13 1892683 1892792 -99980377 - L1MC5 LINE L1 -30 7931 7822 21 36 0 0 chr13 1893989 1894017 -99979152 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr13 1894059 1894079 -99979090 + (TA)n Simple_repeat Simple_repeat 2 21 0 2309 117 3 0 chr13 1894079 1894386 -99978783 - AluSq SINE Alu -5 308 1 2017 89 22 61 chr13 1894387 1894700 -99978469 - AluSx SINE Alu -11 301 1 2060 133 10 0 chr13 1895659 1895959 -99977210 + AluSx SINE Alu 1 303 -9 812 160 0 0 chr13 1896002 1896127 -99977042 - FLAM_C SINE Alu -18 125 1 783 107 99 0 chr13 1896541 1896662 -99976507 + L1PA6 LINE L1 6022 6154 0 2238 110 3 19 chr13 1897331 1897641 -99975528 - AluSx SINE Alu -7 305 1 2118 107 4 0 chr13 1897679 1897996 -99975173 - AluSp SINE Alu 0 318 1 1914 119 49 0 chr13 1898017 1898303 -99974866 - AluSp SINE Alu -13 300 1 439 241 35 28 chr13 1899032 1899177 -99973992 + L1ME1 LINE L1 6017 6162 -4 269 290 142 41 chr13 1899194 1899363 -99973806 + MIR SINE MIR 64 249 -13 2062 105 0 60 chr13 1899810 1900124 -99973045 - AluSq SINE Alu -18 295 1 256 304 54 18 chr13 1900918 1901030 -99972139 + MIR SINE MIR 42 157 -105 198 0 0 0 chr13 1902163 1902185 -99970984 + (A)n Simple_repeat Simple_repeat 1 22 0 314 333 106 80 chr13 1902223 1902637 -99970532 - L2 LINE L2 -4 3268 2844 210 191 0 0 chr13 1902783 1902825 -99970344 + (TA)n Simple_repeat Simple_repeat 1 42 0 2223 124 3 0 chr13 1902825 1903132 -99970037 - AluSp SINE Alu -5 308 1 382 321 194 19 chr13 1903185 1903562 -99969607 - L2 LINE L2 -697 2617 2175 761 294 127 20 chr13 1904004 1904406 -99968763 - L1MC4a LINE L1 -1896 5912 5468 258 81 0 0 chr13 1904460 1904497 -99968672 + (TA)n Simple_repeat Simple_repeat 1 37 0 2408 90 0 0 chr13 1904498 1904799 -99968370 - AluSq SINE Alu -12 301 1 2350 104 0 13 chr13 1904951 1905267 -99967902 + AluSx SINE Alu 1 312 0 1429 134 36 13 chr13 1905305 1905529 -99967640 - MER30 DNA MER1_type 0 230 2 338 228 49 41 chr13 1905543 1905666 -99967503 + L1M4 LINE L1 4487 4610 -1536 447 288 134 22 chr13 1905831 1906041 -99967128 - L1MC4a LINE L1 -1904 5904 5644 2229 96 14 0 chr13 1906041 1906332 -99966837 - AluSg SINE Alu -15 295 1 447 288 134 22 chr13 1906332 1906441 -99966728 - L1MC4a LINE L1 -2164 5644 5549 2996 185 63 9 chr13 1906752 1907400 -99965769 - L1MB4 LINE L1 -14 6166 5484 405 0 0 0 chr13 1907424 1907469 -99965700 + (TATG)n Simple_repeat Simple_repeat 3 47 0 743 173 0 39 chr13 1907469 1907587 -99965582 - FLAM_C SINE Alu -187 115 1 2226 115 13 0 chr13 1907614 1907918 -99965251 + AluSc SINE Alu 1 308 -1 1838 187 66 0 chr13 1907970 1908333 -99964836 - L1MB2 LINE L1 -2 6169 5783 * 2423 214 109 71 chr13 1908326 1908747 -99964422 - L1M4 LINE L1 -3493 3151 2747 815 169 0 29 chr13 1908747 1908883 -99964286 - FLAM_C SINE Alu -1 132 1 2423 214 109 71 chr13 1908883 1909041 -99964128 - L1M4 LINE L1 -3897 2747 2596 2334 77 10 13 chr13 1909041 1909352 -99963817 - AluY SINE Alu -1 310 1 2423 214 109 71 chr13 1909352 1909443 -99963726 - L1M4 LINE L1 -4048 2596 2510 2225 98 0 3 chr13 1909443 1909739 -99963430 - AluY SINE Alu -16 295 1 2423 214 109 71 chr13 1909739 1909977 -99963192 - L1M4 LINE L1 -4134 2510 2282 2273 87 7 10 chr13 1909977 1910277 -99962892 - AluSp SINE Alu -14 299 1 2423 214 109 71 chr13 1910277 1910898 -99962271 - L1M4 LINE L1 -4362 2282 1566 291 236 59 98 chr13 1910901 1911104 -99962065 - L1M4 LINE L1 -5520 1022 828 328 344 43 66 chr13 1911245 1911550 -99961619 - L1M4 LINE L1 -6084 562 265 41 14 5 0 chr13 1911611 1911694 -99961475 + AT_rich Low_complexity Low_complexity 1 48 0 326 269 138 30 chr13 1911776 1912032 -99961137 - L1M4 LINE L1 -1173 4973 4657 2311 113 0 3 chr13 1912032 1912342 -99960827 + AluSx SINE Alu 1 309 -3 326 269 138 30 chr13 1912342 1912483 -99960686 - L1M4 LINE L1 -1489 4657 4533 1721 197 3 0 chr13 1912552 1912888 -99960281 + AluJo SINE Alu 1 337 0 1050 134 24 93 chr13 1912896 1913142 -99960027 - L1MC5 LINE L1 -1023 6938 6710 796 283 112 40 chr13 1913145 1913788 -99959381 - HAL1 LINE L1 -1400 1107 419 2019 112 0 0 chr13 1913844 1914113 -99959056 - AluSx SINE Alu -6 306 38 392 42 0 0 chr13 1914162 1914210 -99958959 + MADE1 DNA Mariner 1 48 -32 627 269 10 35 chr13 1914345 1914546 -99958623 - HAL1 LINE L1 -2272 235 40 377 392 25 32 chr13 1914563 1914710 -99958459 - L1M4 LINE L1 -1821 4325 4179 2233 111 0 3 chr13 1914710 1915008 -99958161 - AluSx SINE Alu -15 297 1 377 392 25 32 chr13 1915008 1915138 -99958031 - L1M4 LINE L1 -1967 4179 4050 1912 159 3 0 chr13 1915181 1915490 -99957679 - AluJb SINE Alu -2 310 1 1737 192 0 0 chr13 1916689 1916986 -99956183 - AluJb SINE Alu -15 297 1 1291 135 19 126 chr13 1917122 1917463 -99955706 + AluJo SINE Alu 1 307 0 1294 194 3 45 chr13 1917465 1917754 -99955415 + AluJo SINE Alu 1 277 -35 251 27 0 27 chr13 1917756 1917793 -99955376 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 458 171 128 8 chr13 1917825 1917942 -99955227 + FLAM_A SINE Alu 12 142 0 24 32 0 0 chr13 1918123 1918154 -99955015 + AT_rich Low_complexity Low_complexity 1 31 0 264 321 169 27 chr13 1918263 1918383 -99954786 - MIR SINE MIR 0 262 160 2372 84 0 28 chr13 1918383 1918703 -99954466 + AluSx SINE Alu 1 311 -1 264 321 169 27 chr13 1918703 1918766 -99954403 - MIR SINE MIR -102 160 53 2090 103 3 3 chr13 1918831 1919122 -99954047 - AluSg SINE Alu -17 293 3 382 116 0 23 chr13 1919134 1919220 -99953949 + (TG)n Simple_repeat Simple_repeat 2 85 0 1214 181 23 5 chr13 1919257 1919473 -99953696 - AluJb SINE Alu -92 220 1 213 264 14 56 chr13 1919973 1920045 -99953124 - L2 LINE L2 -6 3266 3198 2043 92 16 33 chr13 1920059 1920363 -99952806 + AluSc SINE Alu 1 299 -10 1735 86 117 52 chr13 1920815 1920861 -99952308 - L1MA2 LINE L1 -6 6298 6256 1804 141 0 0 chr13 1920861 1921123 -99952046 - AluSx SINE Alu -8 304 43 1735 86 117 52 chr13 1921123 1921400 -99951769 - L1MA2 LINE L1 -48 6256 5954 668 292 107 0 chr13 1921465 1921698 -99951471 + L2 LINE L2 2523 2780 -534 325 250 29 59 chr13 1921701 1921837 -99951332 + L2 LINE L2 3182 3313 0 476 333 52 26 chr13 1921861 1922092 -99951077 + L2 LINE L2 2823 3059 -254 422 120 13 0 chr13 1922610 1922685 -99950484 + (TG)n Simple_repeat Simple_repeat 1 76 0 1884 159 3 20 chr13 1922685 1922981 -99950188 - AluJo SINE Alu -21 291 1 250 241 38 38 chr13 1922987 1923066 -99950103 + L2 LINE L2 3186 3264 -8 204 272 49 25 chr13 1923091 1923172 -99949997 + MIR SINE MIR 47 129 -133 1756 144 4 14 chr13 1923176 1923453 -99949716 - AluJb SINE Alu 0 312 39 822 202 31 40 chr13 1923455 1923678 -99949491 - MLT1D LTR MaLR -283 222 2 1420 154 75 26 chr13 1923832 1923959 -99949210 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr13 1923959 1923980 -99949189 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1420 154 75 26 chr13 1923980 1924119 -99949050 + AluJb SINE Alu 120 280 -32 885 104 0 22 chr13 1925760 1925894 -99947275 + FLAM_C SINE Alu 1 131 -2 2056 107 21 17 chr13 1926060 1926350 -99946819 - AluSx SINE Alu -21 291 1 25 23 0 23 chr13 1926381 1926406 -99946763 + AT_rich Low_complexity Low_complexity 1 26 -16 1570 190 0 40 chr13 1926406 1926706 -99946463 - AluJo SINE Alu -24 288 1 25 23 0 23 chr13 1926706 1926723 -99946446 + AT_rich Low_complexity Low_complexity 26 42 0 284 233 27 0 chr13 1926786 1926859 -99946310 - L1MA10 LINE L1 0 6334 6260 31 0 0 0 chr13 1926913 1926944 -99946225 + AT_rich Low_complexity Low_complexity 1 31 0 1523 153 120 7 chr13 1926966 1927240 -99945929 - AluSg1 SINE Alu -4 305 1 1078 178 28 37 chr13 1927352 1927566 -99945603 + AluJb SINE Alu 85 296 -16 1640 180 0 48 chr13 1927861 1928006 -99945163 + AluJo SINE Alu 2 126 -186 2014 116 34 0 chr13 1928006 1928298 -99944871 + AluSx SINE Alu 1 302 -10 1640 180 0 48 chr13 1928298 1928463 -99944706 + AluJo SINE Alu 126 297 -15 437 239 0 18 chr13 1928487 1928600 -99944569 + FAM SINE Alu 41 151 -34 407 197 0 0 chr13 1928857 1928933 -99944236 - L1ME LINE L1 -437 5684 5609 210 118 0 0 chr13 1929068 1929102 -99944067 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 256 47 12 chr13 1929104 1929190 -99943979 - L1ME LINE L1 -507 5614 5526 13410 126 85 16 chr13 1930754 1931372 -99941797 + Tigger1 DNA MER2_type 1 575 -1843 1628 174 24 17 chr13 1931372 1931659 -99941510 - AluJb SINE Alu -23 289 1 13410 126 85 16 chr13 1931659 1932671 -99940498 + Tigger1 DNA MER2_type 575 1834 -584 2019 152 7 0 chr13 1932671 1932974 -99940195 + AluSx SINE Alu 1 305 -7 13410 126 85 16 chr13 1932974 1933603 -99939566 + Tigger1 DNA MER2_type 1834 2418 0 358 254 182 22 chr13 1933856 1934037 -99939132 - MIR SINE MIR -2 260 51 648 155 105 33 chr13 1934058 1934239 -99938930 - L1MA8 LINE L1 -3 6288 6095 2054 128 0 49 chr13 1935183 1935510 -99937659 - AluSx SINE Alu -1 311 1 2274 68 0 4 chr13 1935809 1936115 -99937054 - AluY SINE Alu 0 306 2 1748 179 3 10 chr13 1937509 1937810 -99935359 + AluJo SINE Alu 1 299 -13 282 164 295 0 chr13 1938290 1938351 -99934818 - Tigger5 DNA MER2_type -2244 79 1 242 224 0 0 chr13 1938388 1938437 -99934732 - Tigger5 DNA MER2_type -17 2306 2258 * 405 188 52 31 chr13 1938418 1938514 -99934655 + Tigger5 DNA MER2_type 2226 2323 0 2310 86 0 3 chr13 1938704 1938995 -99934174 - AluSq SINE Alu -20 293 4 247 211 28 28 chr13 1939023 1939094 -99934075 - L1 LINE L1 -3324 2822 2752 382 266 62 76 chr13 1939134 1939182 -99933987 - L1 LINE L1 -2227 3919 3872 2128 127 3 0 chr13 1939182 1939482 -99933687 - AluSx SINE Alu -11 301 1 382 266 62 76 chr13 1939482 1939509 -99933660 - L1 LINE L1 -2274 3872 3846 914 204 90 75 chr13 1939509 1939693 -99933476 + MER44D DNA MER2_type 2 182 -2309 2002 145 0 3 chr13 1939693 1939989 -99933180 - AluSx SINE Alu -14 298 4 914 204 90 75 chr13 1939989 1940137 -99933032 + MER44D DNA MER2_type 182 609 0 382 266 62 76 chr13 1940137 1940350 -99932819 - L1 LINE L1 -2300 3846 3634 380 275 159 48 chr13 1940356 1940665 -99932504 + L1 LINE L1 2995 3337 -2809 244 290 50 0 chr13 1940841 1940941 -99932228 + L1 LINE L1 3515 3619 -2527 7987 217 67 46 chr13 1940964 1941745 -99931424 - L1MB4 LINE L1 -6 6410 5647 1770 151 6 25 chr13 1941745 1942063 -99931106 - AluSx SINE Alu 0 312 1 7987 217 67 46 chr13 1942063 1942166 -99931003 - L1MB4 LINE L1 -769 5647 5548 2172 118 0 0 chr13 1942166 1942500 -99930669 - AluSg SINE Alu 0 310 1 1391 159 23 0 chr13 1942503 1942767 -99930402 - L1MA5 LINE L1 0 6300 6031 7987 217 67 46 chr13 1942767 1942813 -99930356 - L1MB4 LINE L1 -869 5547 5503 1113 196 35 4 chr13 1942813 1943042 -99930127 - MER46A DNA MER2_type 0 236 1 7987 217 67 46 chr13 1943042 1943127 -99930042 - L1MB4 LINE L1 -913 5503 5421 2117 112 3 22 chr13 1943127 1943304 -99929865 - AluSx SINE Alu -3 309 139 2173 115 3 3 chr13 1943304 1943609 -99929560 - AluSx SINE Alu -5 307 3 2117 112 3 22 chr13 1943609 1943744 -99929425 - AluSx SINE Alu -173 139 3 1907 146 3 14 chr13 1943746 1944041 -99929128 - AluSx SINE Alu -20 292 1 7987 217 67 46 chr13 1944041 1945632 -99927537 - L1MB4 LINE L1 -995 5421 3864 2144 100 0 4 chr13 1945632 1945933 -99927236 - AluSc SINE Alu 0 300 1 7987 217 67 46 chr13 1945933 1946324 -99926845 - L1MB4 LINE L1 -2552 3864 3483 2090 128 17 0 chr13 1946324 1946620 -99926549 - AluSx SINE Alu -9 303 3 7987 217 67 46 chr13 1946620 1948607 -99924562 - L1MB4 LINE L1 -2933 3483 1169 617 270 144 46 chr13 1948623 1948908 -99924261 - L1MDa LINE L1 -5898 642 330 * 1225 226 82 45 chr13 1948904 1949750 -99923419 - L1MDa LINE L1 -4745 1795 749 307 206 211 10 chr13 1949771 1949970 -99923199 + Charlie7 DNA MER1_type 2373 2611 -1 2155 119 3 3 chr13 1950360 1950672 -99922497 + AluSq SINE Alu 2 313 0 191 257 0 0 chr13 1951439 1951474 -99921695 + L2 LINE L2 3259 3293 -20 448 208 52 78 chr13 1951621 1951775 -99921394 - L1MC4 LINE L1 -242 7800 7651 2156 82 41 3 chr13 1951793 1952085 -99921084 - AluSp SINE Alu -10 303 1 311 250 81 32 chr13 1952085 1952209 -99920960 - L1MEc LINE L1 -4956 1586 1457 207 143 0 41 chr13 1952210 1952259 -99920910 + (TATTG)n Simple_repeat Simple_repeat 5 51 0 1847 240 57 111 chr13 1952262 1952542 -99920627 - L1MEc LINE L1 -5202 1623 1329 2445 65 0 0 chr13 1952542 1952836 -99920333 - AluY SINE Alu -17 294 1 1847 240 57 111 chr13 1952836 1953753 -99919416 - L1MEc LINE L1 -5496 1329 491 1321 167 98 0 chr13 1953772 1954059 -99919110 - L1MC4 LINE L1 -422 7620 7306 1060 213 139 18 chr13 1954386 1954781 -99918388 - Charlie4a DNA MER1_type -4 504 62 2224 123 3 0 chr13 1955485 1955794 -99917375 - AluSg SINE Alu 0 310 1 434 139 0 13 chr13 1956963 1957042 -99916127 - FLAM_A SINE Alu -10 132 55 454 163 0 22 chr13 1957093 1957185 -99915984 - AluJ/FLAM SINE Alu -218 94 5 189 0 0 0 chr13 1957204 1957225 -99915944 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1497 129 133 0 chr13 1957233 1957481 -99915688 - MER7A DNA MER2_type -1 345 67 33 25 0 0 chr13 1957605 1957645 -99915524 + AT_rich Low_complexity Low_complexity 1 40 0 542 305 138 27 chr13 1959186 1959520 -99913649 + L3 LINE CR1 1163 1533 -44 1702 179 9 18 chr13 1960103 1960432 -99912737 + MER2 DNA MER2_type 1 326 -19 1480 207 36 25 chr13 1960633 1960991 -99912178 - MLT1A1 LTR MaLR -3 362 1 2035 138 10 0 chr13 1961363 1961654 -99911515 - AluSx SINE Alu -16 296 3 2262 108 0 16 chr13 1961782 1961960 -99911209 - AluSx SINE Alu -2 310 138 2548 57 0 0 chr13 1961960 1962259 -99910910 - AluY SINE Alu -12 299 1 2262 108 0 16 chr13 1962259 1962395 -99910774 - AluSx SINE Alu -174 138 1 28 71 0 0 chr13 1962674 1962730 -99910439 + AT_rich Low_complexity Low_complexity 1 56 0 2195 112 13 0 chr13 1963427 1963732 -99909437 - AluSx SINE Alu -3 309 1 2470 87 0 0 chr13 1964161 1964470 -99908699 - AluSx SINE Alu -3 309 1 21 36 0 0 chr13 1967427 1967455 -99905714 + AT_rich Low_complexity Low_complexity 1 28 0 2258 93 20 3 chr13 1968775 1969076 -99904093 - AluSx SINE Alu -6 306 1 365 97 81 0 chr13 1969309 1969371 -99903798 - L1PA13 LINE L1 -8 6806 6740 2715 108 35 0 chr13 1969418 1969824 -99903345 - L1PA13 LINE L1 -60 6754 6335 18824 188 39 17 chr13 1969824 1971035 -99902134 - L1PA13 LINE L1 -967 5830 4647 2241 96 0 10 chr13 1971035 1971337 -99901832 - AluY SINE Alu -12 299 1 18824 188 39 17 chr13 1971337 1974286 -99898883 - L1PA13 LINE L1 -2150 4647 1506 2025 157 0 0 chr13 1974286 1974585 -99898584 - AluSx SINE Alu -13 299 1 18824 188 39 17 chr13 1974585 1976125 -99897044 - L1PA13 LINE L1 -5291 1506 1 2417 88 0 0 chr13 1976329 1976634 -99896535 + AluSx SINE Alu 1 305 -7 25 51 0 0 chr13 1977372 1977411 -99895758 + AT_rich Low_complexity Low_complexity 1 39 0 1744 161 20 33 chr13 1977521 1977825 -99895344 + AluJo SINE Alu 1 300 -12 1612 203 0 23 chr13 1977828 1978129 -99895040 + AluJo SINE Alu 3 296 -16 243 0 0 0 chr13 1978145 1978172 -99894997 + (TG)n Simple_repeat Simple_repeat 2 28 0 333 250 71 0 chr13 1978172 1978256 -99894913 + L1MC4 LINE L1 6614 6703 -1339 320 298 21 0 chr13 1978188 1978282 -99894887 - L1MC4 LINE L1 -1339 6703 6608 * 31 58 0 0 chr13 1979851 1979903 -99893266 + AT_rich Low_complexity Low_complexity 1 52 0 210 304 43 0 chr13 1980236 1980305 -99892864 + L3 LINE CR1 1459 1530 -47 292 258 250 23 chr13 1981205 1981333 -99891836 + MIR SINE MIR 44 200 -62 24 32 0 0 chr13 1982464 1982495 -99890674 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr13 1983548 1983601 -99889568 + AT_rich Low_complexity Low_complexity 1 53 0 344 261 11 22 chr13 1984837 1984929 -99888240 - MER5B DNA MER1_type -1 177 87 2142 88 34 10 chr13 1984941 1985236 -99887933 + AluSq SINE Alu 1 302 -11 417 244 0 0 chr13 1985745 1985835 -99887334 + MIR SINE MIR 78 167 -95 552 321 74 4 chr13 1985884 1986127 -99887042 + MIR SINE MIR 2 261 -1 337 179 90 13 chr13 1986414 1986492 -99886677 - MIR SINE MIR -110 152 69 658 194 61 92 chr13 1986501 1986697 -99886472 - MER8 DNA MER2_type -1 238 49 2233 177 40 38 chr13 1986775 1987228 -99885941 - MER82 DNA MER2_type 0 653 200 294 314 65 54 chr13 1987806 1988083 -99885086 + Tigger2 DNA MER2_type 1411 1690 -1028 1827 155 34 0 chr13 1988658 1988832 -99884337 - AluSx SINE Alu -5 307 117 249 109 0 0 chr13 1988832 1988878 -99884291 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1827 155 34 0 chr13 1988878 1989000 -99884169 - AluSx SINE Alu -195 117 1 653 218 56 0 chr13 1989284 1989426 -99883743 - MER82 DNA MER2_type -492 161 12 342 113 25 125 chr13 1991190 1991270 -99881899 + Tigger2 DNA MER2_type 1 72 -2646 253 222 111 0 chr13 1991273 1991327 -99881842 - MER2 DNA MER2_type -4 341 282 * 473 172 192 86 chr13 1991306 1991336 -99881833 - MER8 DNA MER2_type -64 175 150 1823 160 7 0 chr13 1991336 1991617 -99881552 + AluJb SINE Alu 21 303 -9 473 172 192 86 chr13 1991617 1991737 -99881432 - MER8 DNA MER2_type -89 150 9 2289 100 3 0 chr13 1991959 1992259 -99880910 + AluSq SINE Alu 1 301 -12 183 42 0 0 chr13 1993144 1993168 -99880001 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1826 153 22 0 chr13 1993170 1993445 -99879724 - AluSx SINE Alu -31 281 1 368 191 112 79 chr13 1993713 1993865 -99879304 - MER112 DNA MER1_type -6 254 98 1894 109 0 0 chr13 1994741 1994989 -99878180 + AluJb SINE Alu 59 306 -6 2242 95 11 0 chr13 1995063 1995347 -99877822 + AluSq SINE Alu 3 289 -24 426 92 63 29 chr13 1995347 1995521 -99877648 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 71 0 0 chr13 1996219 1996261 -99876908 + AT_rich Low_complexity Low_complexity 1 42 0 207 281 16 16 chr13 1996261 1996382 -99876787 + (TTA)n Simple_repeat Simple_repeat 2 122 0 1136 191 12 16 chr13 1996821 1997077 -99876092 + L1M4 LINE L1 4947 5201 -945 1318 122 141 53 chr13 1997079 1997342 -99875827 + AluJo SINE Alu 1 286 -26 286 83 0 0 chr13 1997358 1997394 -99875775 + U1 snRNA snRNA 1 36 -129 * 316 166 0 11 chr13 1997375 1997447 -99875722 + Alu SINE Alu 248 300 -2 586 190 17 17 chr13 1997803 1997919 -99875250 - Tigger2 DNA MER2_type 0 2718 2603 * 1939 113 88 105 chr13 1997914 1998322 -99874847 - Tigger2 DNA MER2_type -39 2679 1 24 53 0 0 chr13 1998762 1998800 -99874369 + AT_rich Low_complexity Low_complexity 1 38 0 518 264 64 90 chr13 1999848 2000159 -99873010 + MER46C DNA MER2_type 34 336 -2 1232 228 60 116 chr13 2000658 2001346 -99871823 - L1MDa LINE L1 -1814 4401 3753 2198 89 10 3 chr13 2002079 2002372 -99870797 - AluSc SINE Alu -14 295 1 941 94 106 12 chr13 2002662 2002822 -99870347 - AluSg/x SINE Alu -21 291 117 3222 125 60 2 chr13 2002838 2003393 -99869776 - MER51C LTR ERV1 0 640 1 889 212 38 128 chr13 2003747 2003801 -99869368 - L1MDa LINE L1 -2467 3748 3691 2214 113 0 3 chr13 2003801 2004102 -99869067 + AluSq SINE Alu 1 300 -13 889 212 38 128 chr13 2004102 2004438 -99868731 - L1MDa LINE L1 -2524 3691 3393 2112 141 3 6 chr13 2004458 2004771 -99868398 - AluSx SINE Alu 0 312 1 517 178 10 10 chr13 2004798 2004899 -99868270 - MER58 DNA MER1_type 0 2420 2320 470 202 148 5 chr13 2005041 2005244 -99867925 - L1MDa LINE L1 -2982 3233 3002 21 36 0 0 chr13 2005285 2005313 -99867856 + AT_rich Low_complexity Low_complexity 1 28 0 2136 137 3 8 chr13 2005403 2005760 -99867409 - L1MB3 LINE L1 -3 6180 5826 378 0 0 0 chr13 2005760 2005802 -99867367 + (TG)n Simple_repeat Simple_repeat 1 42 0 1613 181 0 17 chr13 2005813 2006100 -99867069 - AluJb SINE Alu -30 282 1 2518 51 0 0 chr13 2006107 2006401 -99866768 - AluY SINE Alu -17 294 1 319 164 30 0 chr13 2006463 2006530 -99866639 + L1MB2 LINE L1 6096 6164 -7 1724 122 17 51 chr13 2007234 2007530 -99865639 - AluSx SINE Alu -5 307 22 2186 50 90 7 chr13 2007727 2008006 -99865163 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 2008139 2008161 -99865008 + AT_rich Low_complexity Low_complexity 1 22 0 536 210 206 0 chr13 2008555 2008788 -99864381 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 2008891 2008914 -99864255 + AT_rich Low_complexity Low_complexity 1 23 0 2462 79 3 0 chr13 2008926 2009231 -99863938 + AluSc SINE Alu 1 306 -3 365 203 26 123 chr13 2010239 2010378 -99862791 - L1MDa LINE L1 -3828 2387 2264 1913 143 7 7 chr13 2010378 2010672 -99862497 - AluJb SINE Alu -14 298 5 365 203 26 123 chr13 2010672 2010708 -99862461 - L1MDa LINE L1 -3951 2264 2226 303 253 55 22 chr13 2010769 2010860 -99862309 - MER58 DNA MER1_type -2151 269 176 232 250 19 0 chr13 2010857 2010909 -99862260 - MER58 DNA MER1_type -158 57 5 * 956 215 105 12 chr13 2010920 2011245 -99861924 - L1MDa LINE L1 -4139 2257 1903 21 36 0 0 chr13 2012622 2012650 -99860519 + AT_rich Low_complexity Low_complexity 1 28 0 2325 90 3 10 chr13 2012937 2013247 -99859922 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 2013903 2014195 -99858974 - AluJo SINE Alu -20 292 4 713 226 53 11 chr13 2014236 2014426 -99858743 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 2014789 2015156 -99858013 - MER46B DNA MER2_type 0 236 1 428 204 76 52 chr13 2015335 2015507 -99857662 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 2016114 2016135 -99857034 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 2016380 2016417 -99856752 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 2016608 2016690 -99856479 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 2020503 2020632 -99852537 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 2020706 2020785 -99852384 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 2021106 2021220 -99851949 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 2021584 2021662 -99851507 + L2 LINE L2 3231 3309 -4 190 333 38 38 chr13 2021920 2022025 -99851144 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 2022517 2022664 -99850505 - MIR SINE MIR -88 174 6 7383 199 104 56 chr13 2022989 2023306 -99849863 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 2023306 2023378 -99849791 + Alu SINE Alu 1 72 -237 7383 199 104 56 chr13 2023378 2025298 -99847871 - Cheshire DNA MER1_type -300 2120 2 2147 120 0 0 chr13 2025346 2025646 -99847523 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 2025657 2025717 -99847452 + L2 LINE L2 1411 1472 -1842 320 282 137 0 chr13 2025717 2025834 -99847335 + L2 LINE L2 1646 1778 -1536 285 307 123 9 chr13 2027266 2027380 -99845789 + L2 LINE L2 3145 3271 -1 379 345 103 5 chr13 2028419 2028613 -99844556 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 2028684 2028711 -99844458 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1531 219 41 24 chr13 2028860 2029253 -99843916 - MSTD LTR MaLR -2 394 3 366 23 0 0 chr13 2029786 2029829 -99843340 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chr13 2030063 2030091 -99843078 + AT_rich Low_complexity Low_complexity 1 28 0 867 112 0 14 chr13 2030716 2030859 -99842310 - L1MB3 LINE L1 -217 5966 5826 414 0 0 0 chr13 2030859 2030905 -99842264 + (TG)n Simple_repeat Simple_repeat 1 46 0 1611 181 0 17 chr13 2030920 2031207 -99841962 - AluJb SINE Alu -30 282 1 2514 51 0 0 chr13 2031214 2031508 -99841661 - AluY SINE Alu -17 294 1 312 164 30 0 chr13 2031570 2031637 -99841532 + L1MB2 LINE L1 6096 6164 -7 1944 110 22 54 chr13 2032344 2032661 -99840508 - AluSx SINE Alu 0 312 6 1654 114 30 11 chr13 2033496 2033760 -99839409 - AluSx SINE Alu -1 311 43 372 255 235 0 chr13 2033900 2034053 -99839116 - MIR SINE MIR -2 260 72 2182 54 90 7 chr13 2034510 2034789 -99838380 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 2034922 2034944 -99838225 + AT_rich Low_complexity Low_complexity 1 22 0 478 210 206 0 chr13 2035338 2035571 -99837598 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 2035674 2035697 -99837472 + AT_rich Low_complexity Low_complexity 1 23 0 2488 79 3 0 chr13 2035709 2036014 -99837155 + AluSc SINE Alu 1 306 -3 335 246 43 29 chr13 2037023 2037161 -99836008 - L1MEc LINE L1 -3828 2387 2248 1925 143 7 7 chr13 2037162 2037456 -99835713 - AluJb SINE Alu -14 298 5 276 253 63 0 chr13 2037565 2037644 -99835525 - MER58 DNA MER1_type -2161 259 176 875 215 105 12 chr13 2037704 2038029 -99835140 - L1MEc LINE L1 -4139 2257 1903 21 36 0 0 chr13 2039407 2039435 -99833734 + AT_rich Low_complexity Low_complexity 1 28 0 2344 90 3 10 chr13 2039722 2040032 -99833137 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 2040688 2040980 -99832189 - AluJo SINE Alu -20 292 4 641 216 58 16 chr13 2041021 2041211 -99831958 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 2041574 2041941 -99831228 - MER46B DNA MER2_type 0 236 1 423 204 76 52 chr13 2042120 2042292 -99830877 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 2042899 2042920 -99830249 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 2043165 2043202 -99829967 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 2043393 2043475 -99829694 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 2047287 2047416 -99825753 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 2047490 2047569 -99825600 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 2047890 2048004 -99825165 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 2048364 2048442 -99824727 + L2 LINE L2 3231 3309 -4 202 324 38 38 chr13 2048700 2048805 -99824364 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 2049297 2049444 -99823725 - MIR SINE MIR -88 174 6 7366 199 104 56 chr13 2049769 2050086 -99823083 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 2050086 2050158 -99823011 + Alu SINE Alu 1 72 -238 7366 199 104 56 chr13 2050158 2052078 -99821091 - Cheshire DNA MER1_type -300 2120 2 2134 120 0 0 chr13 2052126 2052426 -99820743 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 2052437 2052497 -99820672 + L2 LINE L2 1411 1472 -1842 1310 271 127 28 chr13 2052497 2052742 -99820427 + L2 LINE L2 1646 1865 -1449 1817 137 48 17 chr13 2052742 2053035 -99820134 - AluJb SINE Alu -10 302 1 1310 271 127 28 chr13 2053035 2053324 -99819845 + L2 LINE L2 1865 2233 -1081 215 176 98 0 chr13 2053384 2053435 -99819734 - MIR SINE MIR -44 218 163 257 217 17 0 chr13 2053436 2053496 -99819673 - MER58A DNA MER1_type 0 224 164 2853 103 55 118 chr13 2053502 2053824 -99819345 - LTR12 LTR ERV1 -132 582 316 189 0 0 0 chr13 2053824 2053845 -99819324 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2853 103 55 118 chr13 2053845 2054143 -99819026 - LTR12 LTR ERV1 -398 316 1 603 166 50 22 chr13 2054150 2054289 -99818880 - MER58C DNA MER1_type -72 143 1 576 216 65 7 chr13 2054312 2054451 -99818718 - MIR SINE MIR -108 154 8 2351 256 152 42 chr13 2054504 2055896 -99817273 + HAL1 LINE L1 249 1794 -713 719 189 18 6 chr13 2055940 2056104 -99817065 + LTR41 LTR ERVL 5 170 -603 479 204 53 29 chr13 2056265 2056472 -99816697 + LTR41 LTR ERVL 566 795 0 296 252 60 66 chr13 2056472 2056790 -99816379 + HAL1 LINE L1 2135 2450 -57 572 111 0 11 chr13 2056806 2056896 -99816273 - Tigger7 DNA MER2_type -7 2484 2396 * 806 222 5 25 chr13 2056894 2057097 -99816072 - Tigger7 DNA MER2_type -466 267 69 2651 139 19 24 chr13 2057185 2057413 -99815756 + L1MB3 LINE L1 5710 5937 -246 2040 137 0 0 chr13 2057413 2057713 -99815456 + AluSx SINE Alu 1 300 -12 2651 139 19 24 chr13 2057713 2057950 -99815219 + L1MB3 LINE L1 5937 6173 -10 25 0 0 0 chr13 2058095 2058120 -99815049 + AT_rich Low_complexity Low_complexity 1 25 0 216 254 175 35 chr13 2058266 2058380 -99814789 - L2 LINE L2 -5 3267 3138 943 176 77 31 chr13 2058883 2059105 -99814064 - MSTD LTR MaLR 0 396 165 1863 142 4 0 chr13 2059933 2060200 -99812969 - AluSx SINE Alu -44 268 1 21 36 0 0 chr13 2060433 2060461 -99812708 + AT_rich Low_complexity Low_complexity 1 28 0 1651 138 28 28 chr13 2060574 2060857 -99812312 - AluJo SINE Alu -29 283 1 233 224 0 0 chr13 2062690 2062739 -99810430 - L3 LINE CR1 -1 1576 1528 565 285 18 35 chr13 2062748 2062817 -99810352 + MER58A DNA MER1_type 1 70 -2350 2317 101 0 0 chr13 2062817 2063114 -99810055 + AluSx SINE Alu 1 297 -15 565 285 18 35 chr13 2063114 2063272 -99809897 + MER58A DNA MER1_type 70 224 0 991 239 128 32 chr13 2064012 2064467 -99808702 + L1ME4a LINE L1 5510 6007 -114 835 279 69 47 chr13 2064556 2064786 -99808383 - L1MEd LINE L1 -4869 1250 1026 381 22 0 0 chr13 2064786 2064832 -99808337 + (TG)n Simple_repeat Simple_repeat 2 47 0 2197 123 0 3 chr13 2064840 2065141 -99808028 - AluSx SINE Alu -12 300 1 835 279 69 47 chr13 2065141 2065410 -99807759 - L1MEd LINE L1 -5099 1020 731 301 375 125 0 chr13 2065545 2065729 -99807440 - L1MEd LINE L1 -5453 666 460 967 256 60 78 chr13 2065899 2066415 -99806754 + L2 LINE L2 2419 2925 -389 2247 107 0 16 chr13 2066490 2066798 -99806371 - AluSg1 SINE Alu -6 303 1 1885 159 7 13 chr13 2066801 2067102 -99806067 - AluJo SINE Alu -7 305 7 1200 251 176 12 chr13 2067178 2067356 -99805813 + L1ME1 LINE L1 5516 5663 -503 973 266 131 38 chr13 2067356 2067829 -99805340 + MLT2B1 LTR ERVL 1 517 -3 1200 251 176 12 chr13 2067829 2068149 -99805020 + L1ME1 LINE L1 5663 6096 -70 234 191 0 0 chr13 2068167 2068214 -99804955 + A-rich Low_complexity Low_complexity 1 47 0 899 172 35 7 chr13 2068219 2068448 -99804721 + AluJb SINE Alu 1 302 -10 1770 147 25 3 chr13 2068449 2068769 -99804400 + AluJb SINE Alu 1 312 0 201 39 0 0 chr13 2068850 2068876 -99804293 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 225 337 69 20 chr13 2069020 2069121 -99804048 - MIR SINE MIR -55 153 48 216 0 0 0 chr13 2069133 2069157 -99804012 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2277 113 0 0 chr13 2069159 2069452 -99803717 - AluSq SINE Alu -20 293 1 252 333 11 0 chr13 2069598 2069685 -99803484 - MIR SINE MIR -117 145 58 254 319 80 35 chr13 2069723 2069836 -99803333 - MIR SINE MIR -55 207 90 236 245 0 0 chr13 2069944 2069993 -99803176 + GA-rich Low_complexity Low_complexity 2 50 0 743 152 49 98 chr13 2070352 2070556 -99802613 + MLT1D LTR MaLR 1 194 -311 446 262 0 0 chr13 2070578 2070681 -99802488 + MLT1D LTR MaLR 387 489 -16 329 220 200 0 chr13 2070965 2071065 -99802104 - MER69 DNA AcHobo -2 2524 2405 350 241 86 0 chr13 2071162 2071278 -99801891 - MER69 DNA AcHobo -2383 143 18 2222 116 0 28 chr13 2071374 2071694 -99801475 + AluSx SINE Alu 1 311 -1 304 190 0 35 chr13 2071701 2071759 -99801410 - L1MC4 LINE L1 -1339 6703 6648 2343 116 0 0 chr13 2072056 2072366 -99800803 - AluSx SINE Alu -2 310 1 1336 173 110 18 chr13 2072485 2072757 -99800412 + AluSg SINE Alu 12 308 -2 917 204 0 17 chr13 2073198 2073374 -99799795 - FRAM SINE Alu -11 165 1 24 53 0 0 chr13 2073487 2073525 -99799644 + AT_rich Low_complexity Low_complexity 1 38 0 1449 158 39 56 chr13 2073963 2074075 -99799094 + AluJb SINE Alu 15 127 -185 197 0 71 0 chr13 2074075 2074103 -99799066 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1449 158 39 56 chr13 2074103 2074274 -99798895 + AluJb SINE Alu 127 293 -19 2130 89 0 71 chr13 2074477 2074802 -99798367 - AluSx SINE Alu -10 302 1 222 297 22 66 chr13 2075531 2075713 -99797456 + C-rich Low_complexity Low_complexity 1 174 0 773 165 41 47 chr13 2076093 2076242 -99796927 + AluJb SINE Alu 137 286 -26 387 0 0 0 chr13 2076242 2076285 -99796884 + (CA)n Simple_repeat Simple_repeat 2 44 0 773 165 41 47 chr13 2076285 2076305 -99796864 + AluJb SINE Alu 286 305 -7 434 264 110 28 chr13 2076472 2076654 -99796515 + L2 LINE L2 3117 3313 0 313 233 56 33 chr13 2076665 2076755 -99796414 + MIR SINE MIR 58 149 -113 1071 153 98 31 chr13 2076756 2077011 -99796158 + LTR54B LTR ERV1 1 272 -226 3323 82 68 78 chr13 2077012 2077522 -99795647 - MER51A LTR ERV1 -8 626 122 2420 88 0 0 chr13 2077522 2077829 -99795340 - AluSq SINE Alu -6 307 1 3323 82 68 78 chr13 2077829 2077950 -99795219 - MER51A LTR ERV1 -512 122 1 605 248 59 5 chr13 2077952 2078154 -99795015 + LTR54B LTR ERV1 281 493 -5 525 238 63 7 chr13 2078325 2078468 -99794701 - MER21B LTR ERV1 -615 248 98 507 221 9 38 chr13 2078443 2078602 -99794567 - MER21B LTR ERV1 -410 195 12 * 820 161 19 6 chr13 2078607 2078769 -99794400 - L1M3 LINE L1 -714 5466 5303 1115 70 0 0 chr13 2078775 2078904 -99794265 + AluSq/x SINE Alu 7 135 -178 2190 123 0 7 chr13 2078904 2079214 -99793955 + AluSc SINE Alu 1 308 -1 1466 206 79 21 chr13 2079246 2079556 -99793613 - L1 LINE L1 -833 5313 4987 2009 107 68 0 chr13 2079556 2079836 -99793333 - AluSx SINE Alu -13 299 1 1466 206 79 21 chr13 2079836 2079963 -99793206 - L1 LINE L1 -1159 4987 4869 258 217 67 0 chr13 2079963 2080023 -99793146 + L2 LINE L2 3238 3301 -12 196 337 63 21 chr13 2080053 2080148 -99793021 + MIR3 SINE MIR 110 208 0 2066 98 19 63 chr13 2080483 2080799 -99792370 - AluSx SINE Alu -10 302 1 539 278 60 56 chr13 2081112 2081346 -99791823 - L2 LINE L2 0 3313 3079 2323 112 3 3 chr13 2081369 2081681 -99791488 + AluSx SINE Alu 1 312 0 186 133 0 0 chr13 2081743 2081773 -99791396 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 249 220 0 0 chr13 2081773 2081823 -99791346 - L2 LINE L2 0 3313 3264 540 265 177 32 chr13 2082158 2082407 -99790762 + L3 LINE CR1 621 905 -672 183 217 43 0 chr13 2082478 2082524 -99790645 + L3 LINE CR1 902 949 -628 680 225 174 34 chr13 2082569 2082862 -99790307 + L1MC4a LINE L1 7062 7395 -413 2057 105 0 44 chr13 2082980 2083298 -99789871 - AluSx SINE Alu 0 305 1 293 222 16 0 chr13 2083298 2083361 -99789808 + MER5A DNA MER1_type 123 186 -3 1586 145 47 34 chr13 2083939 2084235 -99788934 - AluJo SINE Alu 0 312 13 21 57 0 0 chr13 2084837 2084872 -99788297 + GC_rich Low_complexity Low_complexity 1 35 0 510 264 25 12 chr13 2085219 2085382 -99787787 + MLT1D LTR MaLR 32 196 -309 312 337 10 10 chr13 2085800 2085898 -99787271 - L1ME1 LINE L1 -5 6161 6064 2435 49 0 3 chr13 2086026 2086340 -99786829 + AluSg SINE Alu 1 313 0 291 177 0 0 chr13 2086465 2086527 -99786642 + (CA)n Simple_repeat Simple_repeat 2 63 0 455 251 8 0 chr13 2086539 2086811 -99786358 + (CA)n Simple_repeat Simple_repeat 1 274 0 219 212 0 0 chr13 2086844 2086929 -99786240 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 199 0 11 chr13 2086958 2086976 -99786193 + (CA)n Simple_repeat Simple_repeat 2 19 -161 2132 121 47 44 chr13 2086976 2087339 -99785830 - THE1B LTR MaLR 0 364 1 530 199 0 11 chr13 2087339 2087501 -99785668 + (CA)n Simple_repeat Simple_repeat 19 180 0 501 228 0 0 chr13 2087528 2087695 -99785474 + (CA)n Simple_repeat Simple_repeat 2 168 0 198 0 0 0 chr13 2088499 2088521 -99784648 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 195 260 65 26 chr13 2088522 2088599 -99784570 - L2 LINE L2 -14 3299 3220 1316 127 23 0 chr13 2088753 2088973 -99784196 - MER50 LTR ERV1 -503 231 7 28 48 0 0 chr13 2089380 2089422 -99783747 + AT_rich Low_complexity Low_complexity 1 42 0 2180 150 92 20 chr13 2089422 2089881 -99783288 - L1MB3 LINE L1 -2 6181 5690 390 207 117 18 chr13 2090089 2090200 -99782969 - MIR SINE MIR -111 151 30 2187 103 3 3 chr13 2090705 2091024 -99782145 - AluSc SINE Alu 0 309 1 2098 122 3 14 chr13 2091024 2091320 -99781849 - AluJb SINE Alu -19 293 1 21 0 0 0 chr13 2091323 2091344 -99781825 + AT_rich Low_complexity Low_complexity 1 21 0 2289 159 18 0 chr13 2091835 2092225 -99780944 - L1MB3 LINE L1 -3 6180 5784 1431 139 58 95 chr13 2092227 2092382 -99780787 - AluJo SINE Alu -17 295 136 2436 95 0 13 chr13 2092382 2092699 -99780470 - AluSq SINE Alu 0 313 1 2436 75 3 0 chr13 2092704 2092997 -99780172 - AluSq SINE Alu -19 294 1 1431 139 58 95 chr13 2092997 2093023 -99780146 - AluJo SINE Alu -180 132 107 189 0 0 0 chr13 2093023 2093044 -99780125 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1431 139 58 95 chr13 2093044 2093149 -99780020 - AluJo SINE Alu -205 107 13 257 285 179 66 chr13 2093257 2093408 -99779761 - MIR SINE MIR -12 250 83 1180 130 4 100 chr13 2093852 2094091 -99779078 - AluJo SINE Alu -17 295 80 442 147 54 116 chr13 2096701 2096830 -99776339 + MER105 DNA DNA 29 149 -55 225 260 0 0 chr13 2099603 2099653 -99773516 + CT-rich Low_complexity Low_complexity 4 53 0 449 207 82 67 chr13 2100353 2100561 -99772608 + MER113 DNA MER1_type? 7 217 -304 559 245 130 10 chr13 2100670 2100870 -99772299 + MER113 DNA MER1_type? 257 480 -41 2080 131 0 3 chr13 2101568 2101858 -99771311 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 2101858 2101883 -99771286 + AT_rich Low_complexity Low_complexity 1 25 0 253 203 31 16 chr13 2103399 2103463 -99769706 + L1ME4a LINE L1 5615 5679 -442 287 302 114 48 chr13 2103656 2104033 -99769136 + MLT1J LTR MaLR 110 511 0 411 235 176 20 chr13 2104075 2104330 -99768839 + L1ME4a LINE L1 5773 6067 -54 2026 153 3 7 chr13 2104920 2105228 -99767941 - AluJo SINE Alu -5 307 1 1665 188 31 0 chr13 2105886 2106174 -99766995 + AluJo SINE Alu 6 302 -10 211 256 0 0 chr13 2106495 2106538 -99766631 + L2 LINE L2 3271 3313 0 261 0 0 0 chr13 2107042 2107071 -99766098 + (TG)n Simple_repeat Simple_repeat 1 29 0 250 265 364 20 chr13 2108289 2108787 -99764382 - L2 LINE L2 -337 2977 2309 1974 143 17 0 chr13 2109062 2109349 -99763820 - AluSx SINE Alu -20 292 1 4091 54 0 0 chr13 2109966 2110464 -99762705 + L1PA5 LINE L1 5656 6153 -1 317 321 55 36 chr13 2110700 2110865 -99762304 - L1M4 LINE L1 -1410 4736 4569 470 267 158 39 chr13 2110980 2111340 -99761829 - L1M4 LINE L1 -1717 4429 4027 1853 166 0 27 chr13 2111528 2111823 -99761346 - AluJo SINE Alu -20 292 6 307 280 155 7 chr13 2112052 2112323 -99760846 - L1M4 LINE L1 -2639 3507 3197 243 0 0 0 chr13 2112970 2112997 -99760172 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1636 148 32 46 chr13 2112997 2113281 -99759888 - AluSx SINE Alu -32 280 1 432 308 70 29 chr13 2114090 2114262 -99758907 - MIR3 SINE MIR 0 208 30 1424 162 4 29 chr13 2114568 2114809 -99758360 - AluJo SINE Alu -77 235 1 2088 89 26 26 chr13 2115299 2115612 -99757557 + AluSq SINE Alu 1 313 0 263 318 103 32 chr13 2115834 2115960 -99757209 - L2 LINE L2 -15 3257 3123 277 111 0 0 chr13 2116022 2116058 -99757111 + AluY SINE Alu 140 175 -126 794 31 0 0 chr13 2116058 2116156 -99757013 + AluSg/x SINE Alu 212 309 0 237 235 20 29 chr13 2117471 2117573 -99755596 + (CCCCG)n Simple_repeat Simple_repeat 5 105 0 47 33 0 0 chr13 2119270 2119331 -99753838 + AT_rich Low_complexity Low_complexity 1 61 0 2768 143 40 6 chr13 2119334 2119829 -99753340 + L1MB3 LINE L1 5671 6182 -1 183 222 0 0 chr13 2120312 2120348 -99752821 + L2 LINE L2 3271 3306 -7 2165 105 0 10 chr13 2120508 2120822 -99752347 + AluSx SINE Alu 1 311 -1 2316 88 0 19 chr13 2120936 2121254 -99751915 + AluSq SINE Alu 1 312 -1 1513 131 20 81 chr13 2121452 2121790 -99751379 + AluJb SINE Alu 4 323 0 1748 134 76 0 chr13 2122702 2122992 -99750177 + AluJb SINE Alu 1 312 0 283 314 6 45 chr13 2123265 2123421 -99749748 - MIR SINE MIR -44 218 69 1672 171 3 13 chr13 2123915 2124225 -99748944 + AluJo SINE Alu 5 311 -1 198 342 70 44 chr13 2124904 2125062 -99748107 + L2 LINE L2 319 480 -2834 276 283 58 96 chr13 2125278 2125518 -99747651 + L3 LINE CR1 1008 1238 -339 794 208 134 19 chr13 2125525 2125741 -99747428 - MIR SINE MIR -12 250 10 202 321 0 0 chr13 2125741 2125797 -99747372 + (TG)n Simple_repeat Simple_repeat 1 56 0 212 342 49 71 chr13 2125797 2126063 -99747106 + L3 LINE CR1 1274 1533 -44 1531 148 32 0 chr13 2126431 2126681 -99746488 - AluJb SINE Alu -54 258 1 1936 156 47 0 chr13 2126800 2127120 -99746049 + MER7A DNA MER2_type 14 346 0 440 251 106 58 chr13 2127365 2127572 -99745597 + MIR SINE MIR 46 262 0 377 279 62 37 chr13 2128702 2128863 -99744306 - MER104 DNA Tc2 -3 177 13 3101 208 18 15 chr13 2129216 2130163 -99743006 + L1M3 LINE L1 4629 5583 -600 310 239 33 43 chr13 2132425 2132543 -99740626 + MIR SINE MIR 70 187 -68 1654 162 13 33 chr13 2135028 2135330 -99737839 - AluJo SINE Alu -16 296 1 942 167 0 6 chr13 2137287 2137455 -99735714 - AluJb SINE Alu -17 295 129 2952 132 29 2 chr13 2137914 2138391 -99734778 - L1MB3 LINE L1 -19 6164 5675 945 302 143 8 chr13 2139593 2139957 -99733212 + L3 LINE CR1 436 848 -729 287 106 0 0 chr13 2139975 2140022 -99733147 + Alu SINE Alu 253 299 -1 2023 136 0 7 chr13 2140183 2140491 -99732678 - AluSx SINE Alu -6 306 1 356 276 138 45 chr13 2140504 2140772 -99732397 + L1ME4a LINE L1 5826 6118 -3 260 291 90 8 chr13 2141074 2141208 -99731961 + L3 LINE CR1 1177 1321 -256 229 250 171 0 chr13 2141560 2141636 -99731533 + L2 LINE L2 3184 3272 0 241 247 55 103 chr13 2141804 2141950 -99731219 + MIR SINE MIR 76 214 -48 227 241 175 36 chr13 2142278 2142415 -99730754 - MIR SINE MIR -15 247 92 1660 183 7 13 chr13 2142869 2143175 -99729994 - AluJb SINE Alu -8 304 1 1368 169 0 0 chr13 2143534 2143765 -99729404 + AluJb SINE Alu 1 231 -81 22 0 0 0 chr13 2149305 2149327 -99723842 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 2149467 2149490 -99723679 + GC_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 2149685 2149718 -99723451 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 2150423 2150444 -99722725 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 2152885 2152906 -99720263 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 2154134 2154161 -99719008 + (A)n Simple_repeat Simple_repeat 1 27 0 479 214 28 84 chr13 2154339 2154517 -99718652 - MER112 DNA MER1_type -92 168 1 1313 150 127 29 chr13 2155219 2155526 -99717643 - MER44D DNA MER2_type -2 607 1 612 247 66 29 chr13 2155902 2156145 -99717024 - L1MC4a LINE L1 -1850 5958 5707 232 229 52 0 chr13 2156153 2156249 -99716920 + L1MCc LINE L1 19 119 -6304 242 273 27 64 chr13 2156904 2157014 -99716155 + L1MCc LINE L1 1291 1396 -5027 * 3217 237 63 31 chr13 2157002 2157193 -99715976 + L1MCc LINE L1 3044 3227 -3714 1720 140 45 3 chr13 2157193 2157485 -99715684 + AluSx SINE Alu 1 304 -8 3217 237 63 31 chr13 2157485 2158244 -99714925 + L1MCc LINE L1 3227 4048 -2893 1884 193 11 26 chr13 2158244 2158622 -99714547 - MLT1A2 LTR MaLR -2 372 1 3217 237 63 31 chr13 2158622 2158963 -99714206 + L1MCc LINE L1 4048 4377 -2564 764 264 50 4 chr13 2158982 2159208 -99713961 - L1MC4a LINE L1 -2119 5689 5459 2043 87 45 7 chr13 2159702 2159990 -99713179 - AluSx SINE Alu -13 299 1 326 253 71 82 chr13 2160068 2160238 -99712931 + L1MEd LINE L1 3 170 -5949 21 0 0 0 chr13 2161276 2161297 -99711872 + AT_rich Low_complexity Low_complexity 1 21 0 1831 134 26 10 chr13 2161859 2162166 -99711003 + AluSx SINE Alu 1 312 0 216 0 0 0 chr13 2162270 2162294 -99710875 + (CA)n Simple_repeat Simple_repeat 2 25 0 386 295 77 0 chr13 2162721 2162877 -99710292 - L1MC/D LINE L1 -2053 5755 5588 219 266 94 0 chr13 2163169 2163233 -99709936 + MIR SINE MIR 76 145 -63 2993 37 0 3 chr13 2163773 2164127 -99709042 + L1PA3 LINE L1 5803 6155 0 480 275 38 25 chr13 2164570 2164730 -99708439 + MER5A DNA MER1_type 27 188 -1 2174 105 0 3 chr13 2164782 2165068 -99708101 + AluSq SINE Alu 1 285 -28 311 68 17 17 chr13 2165068 2165127 -99708042 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 296 170 0 19 chr13 2165145 2165167 -99708002 + AluSg/x SINE Alu 113 133 -167 2551 71 0 0 chr13 2165167 2165475 -99707694 + AluY SINE Alu 1 308 -3 1728 157 111 12 chr13 2165587 2165919 -99707250 + MLT1A1 LTR MaLR 1 365 0 192 231 125 38 chr13 2167146 2167306 -99705863 - L2 LINE L2 -209 3063 2890 6643 187 149 30 chr13 2167465 2167545 -99705624 + L1MDa LINE L1 276 345 -6195 2305 79 3 3 chr13 2167545 2167837 -99705332 + AluSc SINE Alu 1 292 -17 6643 187 149 30 chr13 2167837 2168446 -99704723 + L1MDa LINE L1 345 880 -5660 2136 125 0 13 chr13 2168446 2168757 -99704412 - AluSq SINE Alu -6 307 1 6643 187 149 30 chr13 2168757 2169440 -99703729 + L1MDa LINE L1 880 1480 -5060 1480 152 4 61 chr13 2169440 2169703 -99703466 + AluSx SINE Alu 1 248 -64 6643 187 149 30 chr13 2169703 2170020 -99703149 + L1MDa LINE L1 1480 2168 -4372 3214 179 23 77 chr13 2170255 2170469 -99702700 - MLT-int LTR MaLR -1001 734 510 2389 66 0 3 chr13 2170469 2170757 -99702412 - AluY SINE Alu -15 296 10 3214 179 23 77 chr13 2170757 2171313 -99701856 - MLT-int LTR MaLR -1225 510 5 1550 204 163 12 chr13 2171329 2171805 -99701364 - L1MC3 LINE L1 -373 7412 6856 189 0 0 0 chr13 2171805 2171826 -99701343 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 204 163 12 chr13 2171826 2171920 -99701249 - L1MC3 LINE L1 -929 6856 6778 284 290 14 69 chr13 2171953 2172098 -99701071 + L2 LINE L2 3136 3272 0 1415 182 62 3 chr13 2173721 2174045 -99699124 - MLT2D LTR ERVL -52 362 20 207 0 0 0 chr13 2174678 2174701 -99698468 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1885 231 2 23 chr13 2176620 2177091 -99696078 + L1M4 LINE L1 4867 5327 -819 22602 54 13 3 chr13 2177093 2179884 -99693285 + L1P LINE L1 4 2823 -3323 1898 148 7 10 chr13 2183145 2183455 -99689714 - AluJb SINE Alu -3 309 1 341 246 26 18 chr13 2183789 2183903 -99689266 - L1MEc LINE L1 -3108 3107 2993 57 28 0 0 chr13 2183908 2183979 -99689190 + AT_rich Low_complexity Low_complexity 1 71 0 2696 247 31 67 chr13 2183984 2184387 -99688782 - L1MEc LINE L1 -3216 2999 2583 1834 146 34 10 chr13 2184387 2184681 -99688488 - AluSx SINE Alu -3 309 9 2696 247 31 67 chr13 2184681 2185273 -99687896 - L1MEc LINE L1 -3632 2583 1971 785 122 257 0 chr13 2185273 2185393 -99687776 - MER5A DNA MER1_type -1 188 100 234 0 0 0 chr13 2185393 2185419 -99687750 + (CTG)n Simple_repeat Simple_repeat 1 26 0 785 122 257 0 chr13 2185419 2185446 -99687723 - MER5A DNA MER1_type -89 100 3 2696 247 31 67 chr13 2185446 2185475 -99687694 - L1MEc LINE L1 -4244 1971 1942 2204 121 0 9 chr13 2185475 2185790 -99687379 - AluSx SINE Alu 0 312 1 2696 247 31 67 chr13 2185790 2186156 -99687013 - L1MEc LINE L1 -4273 1942 1726 2302 97 0 0 chr13 2186156 2186444 -99686725 - AluSx SINE Alu -24 288 1 2696 247 31 67 chr13 2186444 2186591 -99686578 - L1MEc LINE L1 -4489 1726 1575 2360 161 50 10 chr13 2186983 2187387 -99685782 - MSTB LTR MaLR -4 422 3 289 317 49 0 chr13 2189012 2189135 -99684034 - MIR SINE MIR -74 188 60 1627 157 0 8 chr13 2189277 2189532 -99683637 + AluSx SINE Alu 1 253 -59 1290 138 0 0 chr13 2190072 2190261 -99682908 - AluSg/x SINE Alu -4 306 118 2131 125 0 0 chr13 2190271 2190559 -99682610 - AluSx SINE Alu -22 290 3 527 221 137 16 chr13 2191892 2192082 -99681087 - MLT1H1 LTR MaLR 0 555 343 233 267 67 44 chr13 2192417 2192507 -99680662 - MIR SINE MIR -90 118 27 374 293 0 45 chr13 2192531 2192664 -99680505 - MARNA DNA Mariner -227 359 233 1424 158 120 19 chr13 2193277 2193288 -99679881 - AluJo SINE Alu -9 293 285 194 0 39 0 chr13 2193288 2193314 -99679855 + (GA)n Simple_repeat Simple_repeat 1 27 0 1424 158 120 19 chr13 2193314 2193568 -99679601 - AluJo SINE Alu -17 285 1 182 36 0 36 chr13 2193624 2193652 -99679517 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5681 147 30 13 chr13 2193878 2194669 -99678500 - L1MA4 LINE L1 -1 6299 5487 2498 60 3 0 chr13 2194669 2194968 -99678201 - AluY SINE Alu -11 300 1 5681 147 30 13 chr13 2194968 2195153 -99678016 - L1MA4 LINE L1 -813 5487 5307 330 320 10 0 chr13 2195297 2195394 -99677775 - L2 LINE L2 0 3272 3175 2389 97 3 0 chr13 2196140 2196451 -99676718 - AluSq SINE Alu -1 312 1 226 203 54 27 chr13 2196643 2196717 -99676452 - MIR SINE MIR -103 159 84 29 0 0 0 chr13 2196720 2196749 -99676420 + AT_rich Low_complexity Low_complexity 1 29 0 1032 104 8 0 chr13 2196749 2196883 -99676286 - AluJo SINE Alu -177 135 1 2377 99 3 0 chr13 2197249 2197561 -99675608 + AluSp SINE Alu 1 313 0 1047 262 52 56 chr13 2197630 2198134 -99675035 - HAL1 LINE L1 -4 2503 2002 414 276 99 17 chr13 2198300 2198481 -99674688 - HAL1 LINE L1 -702 1805 1610 261 321 114 15 chr13 2198479 2198610 -99674559 - HAL1 LINE L1 -2336 171 28 * 209 220 0 0 chr13 2198743 2198793 -99674376 - MIR SINE MIR -74 134 85 1164 169 14 119 chr13 2198925 2199203 -99673966 + MSTD LTR MaLR 148 396 0 2121 95 3 7 chr13 2199937 2200263 -99672906 + AluSx SINE Alu 6 312 0 2639 204 73 8 chr13 2201311 2202286 -99670883 + L1MD1 LINE L1 2078 3126 -3414 2158 201 31 53 chr13 2202308 2202854 -99670315 - MER74A LTR ERVL -24 534 1 1836 215 47 32 chr13 2202854 2206193 -99666976 + L1MD1 LINE L1 3126 6636 0 491 219 83 49 chr13 2206231 2206436 -99666733 + L1MC5 LINE L1 7655 7866 -95 317 266 65 32 chr13 2206479 2206603 -99666566 + MIR SINE MIR 2 129 -133 566 61 24 0 chr13 2206606 2206688 -99666481 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2390 94 3 0 chr13 2206699 2207007 -99666162 - AluSx SINE Alu -3 309 1 302 213 150 0 chr13 2207009 2207089 -99666080 + MIR SINE MIR 101 192 -70 1254 222 20 33 chr13 2207257 2207563 -99665606 - AluJo SINE Alu -10 302 1 1631 173 19 25 chr13 2207859 2208177 -99664992 - L1MA10 LINE L1 -593 5741 5426 2848 178 21 22 chr13 2208177 2208756 -99664413 + L1MA10 LINE L1 5755 6333 -1 2261 128 0 0 chr13 2208935 2209247 -99663922 + AluSx SINE Alu 1 312 0 2334 77 0 13 chr13 2211733 2212031 -99661138 + AluY SINE Alu 1 294 -17 2278 174 31 2 chr13 2213215 2213635 -99659534 - L1MB2 LINE L1 -150 6021 5590 2514 68 0 3 chr13 2216523 2216833 -99656336 - AluY SINE Alu -2 309 1 243 0 0 0 chr13 2217173 2217200 -99655969 + (A)n Simple_repeat Simple_repeat 1 27 0 1715 141 40 59 chr13 2217200 2217504 -99655665 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 2217844 2217865 -99655304 + GC_rich Low_complexity Low_complexity 1 21 0 1174 233 4 0 chr13 2219916 2220174 -99652995 + MER82 DNA MER2_type 54 312 -341 375 272 123 73 chr13 2220179 2220253 -99652916 + L1M4 LINE L1 4584 4653 -1493 1654 153 62 7 chr13 2220253 2220413 -99652756 + L1MA9 LINE L1 5987 6137 -175 387 0 0 0 chr13 2220413 2220456 -99652713 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 153 62 7 chr13 2220456 2220603 -99652566 + L1MA9 LINE L1 6137 6311 -1 375 272 123 73 chr13 2220603 2221082 -99652087 + L1M4 LINE L1 4653 5176 -970 2536 65 0 7 chr13 2221082 2221390 -99651779 + AluY SINE Alu 1 306 -5 375 272 123 73 chr13 2221390 2221475 -99651694 + L1M4 LINE L1 5176 5255 -891 1085 151 17 6 chr13 2221480 2221652 -99651517 + AluSg/x SINE Alu 137 310 -2 800 180 9 104 chr13 2221727 2221938 -99651231 - MLT1B LTR MaLR -197 193 3 1493 161 31 93 chr13 2221957 2222188 -99650981 - MLT1B-int LTR MaLR -17 1718 1511 2730 185 4 0 chr13 2222188 2222669 -99650500 + L1PB4 LINE L1 5669 6151 -5 1493 161 31 93 chr13 2222669 2222761 -99650408 - MLT1B-int LTR MaLR -224 1511 1415 2017 141 7 7 chr13 2222927 2223231 -99649938 + AluSx SINE Alu 1 304 -8 301 342 7 7 chr13 2223341 2223493 -99649676 + L1MC/D LINE L1 4925 5076 -1070 3847 156 62 40 chr13 2223511 2223789 -99649380 + L1PA16 LINE L1 4683 4953 -1213 3847 129 52 53 chr13 2223789 2224523 -99648646 + L1PA16 LINE L1 5431 6166 0 3847 156 62 40 chr13 2224523 2224858 -99648311 + L1PA16 LINE L1 4953 6166 0 1804 160 3 0 chr13 2225040 2225354 -99647815 - AluSx SINE Alu 0 315 1 23 0 0 0 chr13 2226645 2226668 -99646501 + AT_rich Low_complexity Low_complexity 1 23 0 2185 104 7 0 chr13 2226753 2227032 -99646137 + AluSq SINE Alu 1 281 -32 395 191 0 64 chr13 2227044 2227138 -99646031 - L1MC4 LINE L1 -1339 6703 6616 276 229 0 0 chr13 2227145 2227228 -99645941 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 292 42 21 chr13 2227287 2227383 -99645786 + MER5B DNA MER1_type 1 98 -80 280 213 113 43 chr13 2227632 2227773 -99645396 + L1MC/D LINE L1 5317 5467 -2341 2689 118 14 21 chr13 2227798 2228232 -99644937 - L1PA13 LINE L1 0 6163 5733 356 131 16 0 chr13 2228232 2228293 -99644876 + MER52C LTR ERV1 1 62 -1216 6016 122 101 28 chr13 2228293 2229332 -99643837 + MER52C LTR ERV1 164 1278 0 4028 98 17 41 chr13 2229333 2229916 -99643253 + MER52C-int LTR ERV1 3 571 -6520 4154 166 28 4 chr13 2230016 2231278 -99641891 + MER52C-int LTR ERV1 1775 3204 -3887 3972 170 24 15 chr13 2231297 2231978 -99641191 + MER52C-int LTR ERV1 807 1493 -5598 697 139 70 0 chr13 2231998 2232113 -99641056 + MER52C-int LTR ERV1 1006 1128 -4818 2506 167 54 32 chr13 2232117 2232784 -99640385 + MER52C-int LTR ERV1 1416 1990 -3596 3182 148 75 8 chr13 2232829 2233331 -99639838 + MER52C-int LTR ERV1 692 1259 -6557 360 0 0 0 chr13 2233331 2233371 -99639798 + (TG)n Simple_repeat Simple_repeat 2 41 0 3182 148 75 8 chr13 2233371 2233491 -99639678 + MER52C-int LTR ERV1 1259 1369 -6447 260 128 0 0 chr13 2233469 2233516 -99639653 + MER52C-int LTR ERV1 1064 1110 -7010 * 2655 203 157 68 chr13 2233515 2234680 -99638489 + MER52C-int LTR ERV1 4480 5748 -1670 299 83 62 0 chr13 2234678 2234726 -99638443 + MER52C-int LTR ERV1 5976 6026 -1179 * 1408 91 10 20 chr13 2234728 2234926 -99638243 + MER52C-int LTR ERV1 6892 7087 -4 1398 146 64 6 chr13 2234926 2235195 -99637974 + MER52C LTR ERV1 23 390 -888 3740 110 9 13 chr13 2235198 2236181 -99636988 - L1P4 LINE L1 -427 5736 4761 584 298 58 4 chr13 2236226 2236468 -99636701 + L1ME4a LINE L1 5574 5828 -293 352 264 98 12 chr13 2236623 2236786 -99636383 - MIR SINE MIR 0 262 86 27 0 0 0 chr13 2236963 2236990 -99636179 + AT_rich Low_complexity Low_complexity 1 27 0 205 273 0 0 chr13 2237059 2237103 -99636066 + (TG)n Simple_repeat Simple_repeat 2 45 0 214 227 0 0 chr13 2237330 2237374 -99635795 + MIR3 SINE MIR 158 201 -7 3412 163 20 34 chr13 2237511 2238166 -99635003 - L1MB2 LINE L1 -3 6168 5523 2100 166 19 27 chr13 2238230 2238711 -99634458 + pTR5 LTR ERV1 738 1214 -1224 456 306 56 49 chr13 2239462 2239746 -99633423 - L1ME1 LINE L1 -2 6164 5879 263 178 0 40 chr13 2240085 2240186 -99632983 + (TA)n Simple_repeat Simple_repeat 1 97 0 1604 171 43 20 chr13 2241061 2241366 -99631803 - AluJo SINE Alu 0 312 1 539 219 31 20 chr13 2241797 2242015 -99631154 - L1MCc LINE L1 -4890 1533 1434 803 239 0 0 chr13 2242015 2242174 -99630995 - FRAM SINE Alu -3 163 5 539 219 31 20 chr13 2242174 2242203 -99630966 - L1MCc LINE L1 -4989 1434 1407 2020 261 104 59 chr13 2242213 2243326 -99629843 - L1MCc LINE L1 -5238 1185 23 259 235 289 51 chr13 2243333 2243648 -99629521 - HAL1 LINE L1 -1004 1503 1114 263 269 60 101 chr13 2243660 2243809 -99629360 - L1M4 LINE L1 -5692 850 708 304 302 55 33 chr13 2243908 2244090 -99629079 - L1M4 LINE L1 -6319 223 38 525 274 106 43 chr13 2244129 2244479 -99628690 - HAL1 LINE L1 -1398 1109 738 379 265 53 15 chr13 2244537 2244669 -99628500 - HAL1 LINE L1 -1966 541 405 373 256 48 24 chr13 2244886 2245011 -99628158 - HAL1 LINE L1 -2364 143 16 182 356 79 10 chr13 2246622 2246723 -99626446 + L2 LINE L2 3137 3244 -28 203 289 66 42 chr13 2247023 2247149 -99626020 - MIR SINE MIR -68 140 35 515 263 96 17 chr13 2247359 2247580 -99625589 - MIR SINE MIR -18 244 3 432 293 45 0 chr13 2248492 2248625 -99624544 - L2 LINE L2 0 3272 3134 2294 116 3 0 chr13 2248643 2248954 -99624215 + AluSx SINE Alu 1 312 0 1604 265 64 49 chr13 2249425 2250366 -99622803 + L1MC5 LINE L1 6096 7072 -889 2762 159 39 33 chr13 2250393 2250883 -99622286 - LTR42 LTR ERVL 0 495 3 898 229 112 46 chr13 2250898 2251334 -99621835 + L1MC5 LINE L1 7269 7733 -228 255 309 73 15 chr13 2251818 2252022 -99621147 + L1MEc LINE L1 898 1113 -6025 418 288 69 2 chr13 2252397 2252615 -99620554 + L1MEc LINE L1 1379 1680 -5323 307 361 0 0 chr13 2252665 2252798 -99620371 + LTR16B LTR ERVL 1 133 -331 3127 262 75 25 chr13 2252805 2254087 -99619082 + L1MEc LINE L1 2295 3511 -3446 1993 157 3 10 chr13 2254087 2254400 -99618769 - AluSx SINE Alu -1 311 1 3127 262 75 25 chr13 2254400 2255053 -99618116 + L1MEc LINE L1 3511 4422 -2535 2049 116 34 7 chr13 2255053 2255346 -99617823 + AluSx SINE Alu 1 301 -11 3127 262 75 25 chr13 2255346 2255522 -99617647 + L1MEc LINE L1 4422 4588 -2369 263 233 8 42 chr13 2255590 2255710 -99617459 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 25 0 0 0 chr13 2256061 2256086 -99617083 + AT_rich Low_complexity Low_complexity 1 25 0 434 286 7 7 chr13 2256773 2256920 -99616249 + LTR16B LTR ERVL 1 147 -317 417 266 89 13 chr13 2256950 2257108 -99616061 + LTR16B LTR ERVL 293 462 -2 230 272 93 107 chr13 2257461 2257902 -99615267 - L2 LINE L2 -666 2648 2214 891 128 8 8 chr13 2260469 2260594 -99612575 + AluSq/x SINE Alu 1 125 -188 201 147 0 0 chr13 2261453 2261487 -99611682 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2023 129 7 0 chr13 2261492 2261770 -99611399 - AluSx SINE Alu -32 280 1 6324 156 36 13 chr13 2262054 2263109 -99610060 + ERVL-D LTR ERVL 3806 4884 -880 2968 154 31 19 chr13 2263109 2263649 -99609520 + ERVL-D LTR ERVL 5211 5757 -7 1403 204 143 30 chr13 2263649 2264021 -99609148 + MLT2D LTR ERVL 1 414 0 2434 82 0 3 chr13 2264115 2264420 -99608749 - AluY SINE Alu -7 304 1 484 234 113 63 chr13 2265677 2265916 -99607253 - MER112 DNA MER1_type -7 253 3 3040 171 49 4 chr13 2266241 2266772 -99606397 - MER41D LTR ERV1 -2 555 1 414 193 61 35 chr13 2267030 2267144 -99606025 + MER21B LTR ERV1 690 806 -57 1813 194 21 5 chr13 2267171 2267548 -99605621 + L1MB4 LINE L1 5792 6174 -6 344 200 0 0 chr13 2267603 2267668 -99605501 + L1MB8 LINE L1 6113 6177 -1 584 81 11 0 chr13 2268341 2268428 -99604741 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1592 177 27 3 chr13 2268428 2268728 -99604441 - AluSx SINE Alu -5 307 1 2782 127 27 22 chr13 2268840 2269085 -99604084 + HUERS-P2 LTR ERV1 2187 2429 -659 1942 125 7 14 chr13 2269085 2269382 -99603787 + AluSq SINE Alu 1 295 -18 2782 127 27 22 chr13 2269382 2269955 -99603214 + HUERS-P2 LTR ERV1 2429 3061 -27 718 101 18 18 chr13 2269966 2270075 -99603094 - MER41D LTR ERV1 -448 109 1 3687 149 77 73 chr13 2270174 2270954 -99602215 + LTR1 LTR ERV1 3 785 0 227 355 47 0 chr13 2271937 2272044 -99601125 - L2 LINE L2 0 3272 3161 18320 93 2 3 chr13 2272377 2275841 -99597328 + L1PA8 LINE L1 2670 6165 -7 21 0 0 0 chr13 2276194 2276215 -99596954 + AT_rich Low_complexity Low_complexity 1 21 0 184 288 45 15 chr13 2277124 2277190 -99595979 - MIR SINE MIR -181 81 14 386 276 83 26 chr13 2277267 2277423 -99595746 - L3 LINE CR1 -289 1288 1124 289 372 17 23 chr13 2277521 2277691 -99595478 - L3 LINE CR1 -712 865 697 332 295 32 11 chr13 2277691 2277786 -99595383 + MIR SINE MIR 2 98 -164 1342 163 23 9 chr13 2278139 2278528 -99594641 - LTR32 LTR ERVL 0 471 15 278 342 136 50 chr13 2279162 2279545 -99593624 - L3 LINE CR1 -1134 443 28 280 177 62 73 chr13 2279593 2279689 -99593480 - L1ME4a LINE L1 -63 6058 5964 936 249 94 57 chr13 2279719 2279913 -99593256 - HAL1b LINE L1 0 1348 1163 2133 57 17 37 chr13 2279913 2280213 -99592956 + AluSg SINE Alu 1 294 -16 936 249 94 57 chr13 2280213 2280581 -99592588 - HAL1b LINE L1 -185 1163 765 651 217 82 124 chr13 2280736 2280879 -99592290 - HAL1b LINE L1 -883 465 318 1933 155 0 0 chr13 2280879 2281189 -99591980 - AluSx SINE Alu -2 310 1 651 217 82 124 chr13 2281189 2281400 -99591769 - HAL1b LINE L1 -1030 318 126 1657 142 31 52 chr13 2282508 2282832 -99590337 + L1MB3 LINE L1 5655 5971 -212 964 161 30 13 chr13 2282876 2283085 -99590084 + L1MB3 LINE L1 5928 6142 -41 2233 98 0 9 chr13 2283085 2283400 -99589769 + AluSx SINE Alu 1 312 0 234 111 333 22 chr13 2283500 2283590 -99589579 - MER5A DNA MER1_type -68 121 4 488 302 47 6 chr13 2284478 2284650 -99588519 - MER112 DNA MER1_type -7 253 75 213 263 158 0 chr13 2285252 2285347 -99587822 + MIR SINE MIR 71 180 -82 210 355 57 40 chr13 2285451 2285575 -99587594 - MIR SINE MIR -65 143 18 2637 13 0 13 chr13 2285730 2286037 -99587132 - AluYa5 SINE Alu -8 303 1 26 0 0 0 chr13 2286215 2286241 -99586928 + AT_rich Low_complexity Low_complexity 1 26 0 324 224 31 99 chr13 2286243 2286435 -99586734 - L1MC5 LINE L1 -209 7752 7574 280 241 19 0 chr13 2286519 2286573 -99586596 + L2 LINE L2 3218 3272 0 1019 185 0 24 chr13 2286615 2286820 -99586349 - AluJo SINE Alu -17 295 96 259 336 82 33 chr13 2286837 2286959 -99586210 + MIR3 SINE MIR 33 160 -48 219 336 49 57 chr13 2287370 2287535 -99585634 - MIR SINE MIR -43 165 12 745 203 0 0 chr13 2287960 2288093 -99585076 + AluJo/FLAM SINE Alu 1 133 -169 273 227 16 16 chr13 2288093 2288135 -99585034 + AluSc SINE Alu 132 148 -151 255 231 0 0 chr13 2288135 2288187 -99584982 + LTR30 LTR ERV1 1 52 -670 2144 132 31 146 chr13 2288187 2288727 -99584442 + LTR12 LTR ERV1 55 480 -234 781 114 16 16 chr13 2288728 2288851 -99584318 + AluSg/x SINE Alu 172 294 -18 196 315 146 23 chr13 2288966 2289096 -99584073 + MIR SINE MIR 111 256 -6 195 297 232 0 chr13 2289713 2289851 -99583318 + MIR3 SINE MIR 1 170 -38 427 86 0 0 chr13 2290115 2290173 -99582996 - MADE1 DNA Mariner -5 75 18 186 322 22 44 chr13 2291343 2291433 -99581736 + L2 LINE L2 3137 3224 -48 849 199 0 23 chr13 2292068 2292239 -99580930 + FRAM SINE Alu 8 174 -2 2187 106 0 3 chr13 2292493 2292796 -99580373 - AluSx SINE Alu -10 302 1 2302 63 0 13 chr13 2293205 2293506 -99579663 + AluY SINE Alu 1 297 -14 448 322 132 0 chr13 2293594 2293821 -99579348 - MIR SINE MIR 0 262 6 657 237 43 53 chr13 2294254 2294461 -99578708 - MER3 DNA MER1_type -2 207 3 2379 81 0 3 chr13 2294517 2294824 -99578345 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr13 2295191 2295211 -99577958 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr13 2295880 2295908 -99577261 + AT_rich Low_complexity Low_complexity 1 28 0 988 223 119 86 chr13 2296809 2297262 -99575907 + MLT1J LTR MaLR 25 492 -19 272 107 125 0 chr13 2297458 2297514 -99575655 - Alu SINE Alu 0 300 238 409 282 80 0 chr13 2298342 2298524 -99574645 + L1MEc LINE L1 1379 1535 -5324 316 361 0 0 chr13 2298574 2298707 -99574462 + LTR16B LTR ERVL 1 133 -331 1773 276 53 19 chr13 2298714 2299994 -99573175 + L1MEc LINE L1 2295 3638 -3319 1875 157 3 10 chr13 2299999 2300312 -99572857 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 2300396 2300419 -99572750 + AT_rich Low_complexity Low_complexity 1 23 0 356 335 6 6 chr13 2301121 2301294 -99571875 + (CA)n Simple_repeat Simple_repeat 1 173 0 2039 224 18 2 chr13 2302933 2303385 -99569784 + L1MB7 LINE L1 5726 6184 0 614 261 67 56 chr13 2304331 2304615 -99568554 + L2 LINE L2 1913 2199 -1115 841 274 77 24 chr13 2304893 2305339 -99567830 + L1MEc LINE L1 895 1389 -4921 2137 108 7 0 chr13 2305339 2305645 -99567524 + AluSq SINE Alu 1 308 -5 841 274 77 24 chr13 2305645 2305819 -99567350 + L1MEc LINE L1 1389 1552 -4758 991 269 65 63 chr13 2305822 2306250 -99566919 + L2 LINE L2 2282 2710 -604 799 279 217 9 chr13 2306351 2306834 -99566335 + L2 LINE L2 2687 3309 -4 197 224 15 104 chr13 2307361 2307428 -99565741 - L2 LINE L2 -9 3304 3244 286 358 83 8 chr13 2307434 2307554 -99565615 - MER5A DNA MER1_type 0 189 61 419 52 17 0 chr13 2307870 2307928 -99565241 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1264 214 43 23 chr13 2307933 2308232 -99564937 - L1MC2 LINE L1 -56 6288 5984 1534 161 43 39 chr13 2308603 2308908 -99564261 + AluJo SINE Alu 1 306 -6 2528 199 42 7 chr13 2310528 2310878 -99562291 - L1MB7 LINE L1 0 6184 5807 2000 120 14 7 chr13 2310878 2311170 -99561999 - AluSx SINE Alu -14 298 5 2528 199 42 7 chr13 2311170 2311366 -99561803 - L1MB7 LINE L1 -377 5807 5619 2713 152 24 35 chr13 2311748 2312241 -99560928 + LTR45B LTR ERV1 2 489 0 274 221 191 0 chr13 2312446 2312514 -99560655 - L2 LINE L2 -26 3287 3207 350 250 68 57 chr13 2313464 2313567 -99559602 - MER5B DNA MER1_type 0 178 71 1945 138 6 6 chr13 2313567 2313878 -99559291 - AluY SINE Alu 0 311 1 350 250 68 57 chr13 2313878 2313950 -99559219 - MER5B DNA MER1_type -107 71 1 208 287 0 0 chr13 2314602 2314710 -99558459 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 387 0 0 0 chr13 2317001 2317044 -99556125 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr13 2317044 2317073 -99556096 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1467 150 0 5 chr13 2317099 2317312 -99555857 + AluSq SINE Alu 1 212 -101 442 50 0 17 chr13 2317312 2317372 -99555797 + AluSq/x SINE Alu 78 136 -177 2266 114 0 3 chr13 2317373 2317670 -99555499 + AluSx SINE Alu 3 298 -14 2303 116 10 0 chr13 2318406 2318716 -99554453 + AluSp SINE Alu 1 313 0 2167 111 19 32 chr13 2318766 2319082 -99554087 + AluSx SINE Alu 1 312 0 27 29 0 0 chr13 2319125 2319159 -99554010 + AT_rich Low_complexity Low_complexity 1 34 0 1861 171 42 46 chr13 2319179 2319611 -99553558 - MSTB1 LTR MaLR -2 430 1 207 0 0 0 chr13 2320136 2320159 -99553010 + (T)n Simple_repeat Simple_repeat 1 23 0 431 197 68 8 chr13 2320742 2320874 -99552295 + L1ME2 LINE L1 5182 5321 -825 483 183 0 0 chr13 2320884 2320966 -99552203 + FLAM_A SINE Alu 42 123 -19 688 210 81 5 chr13 2320999 2321185 -99551984 + L1ME2 LINE L1 5328 5527 -635 1190 195 4 22 chr13 2321185 2321411 -99551758 - AluJo SINE Alu -18 294 73 1451 225 58 41 chr13 2321416 2321883 -99551286 + L1ME2 LINE L1 5535 6009 -155 439 152 38 60 chr13 2322015 2322199 -99550970 + (CA)n Simple_repeat Simple_repeat 1 180 0 326 140 45 40 chr13 2322241 2322661 -99550508 + (CA)n Simple_repeat Simple_repeat 1 422 0 404 184 226 16 chr13 2322830 2323020 -99550149 + MLT1B LTR MaLR 28 257 -133 228 221 95 21 chr13 2323456 2323551 -99549618 - MIR SINE MIR -132 130 29 266 233 0 0 chr13 2324106 2324166 -99549003 + L2 LINE L2 2471 2530 -784 1035 216 39 49 chr13 2324278 2324584 -99548585 + MER58B DNA MER1_type 39 341 0 332 258 215 27 chr13 2324585 2324841 -99548328 + L2 LINE L2 2673 2976 -338 671 194 0 4 chr13 2325042 2325310 -99547859 + (TGG)n Simple_repeat Simple_repeat 1 266 0 301 282 155 7 chr13 2325657 2325799 -99547370 - L1ME4a LINE L1 -13 6108 5946 2311 72 17 10 chr13 2325916 2326206 -99546963 + AluY SINE Alu 1 292 -19 2261 113 23 10 chr13 2327157 2327466 -99545703 - AluSq SINE Alu 0 313 1 224 306 0 0 chr13 2327466 2327528 -99545641 - L2 LINE L2 -10 3303 3242 947 287 74 51 chr13 2328062 2328952 -99544217 + L2 LINE L2 2383 3309 -4 1146 251 43 15 chr13 2329405 2329731 -99543438 + L1MD3 LINE L1 7467 7801 -194 1203 168 13 35 chr13 2330439 2330671 -99542498 + AluJo SINE Alu 86 312 0 306 286 108 14 chr13 2331427 2331640 -99541529 + L1ME2 LINE L1 5576 5808 -313 189 238 24 0 chr13 2331642 2331684 -99541485 + L2 LINE L2 2348 2390 -924 474 272 209 10 chr13 2331694 2331900 -99541269 + MIR SINE MIR 2 248 -14 1674 177 112 58 chr13 2331900 2332329 -99540840 - LTR47A LTR ERVL 0 452 1 624 258 8 0 chr13 2332343 2332475 -99540694 - MER5B DNA MER1_type -11 167 35 327 319 89 41 chr13 2332478 2332914 -99540255 + L1ME LINE L1 141 597 -5608 1367 271 88 79 chr13 2333109 2333418 -99539751 + L1ME LINE L1 663 968 -5428 2337 88 0 0 chr13 2333418 2333702 -99539467 + AluSx SINE Alu 1 284 -28 1367 271 88 79 chr13 2333702 2334859 -99538310 + L1ME LINE L1 968 2147 -4249 2229 129 49 56 chr13 2334859 2335307 -99537862 + MER65A LTR ERV1 1 445 0 1367 271 88 79 chr13 2335307 2335438 -99537731 + L1ME LINE L1 2147 2275 -4121 470 317 76 15 chr13 2335436 2335764 -99537405 + L1ME LINE L1 37 384 -6012 * 1984 174 0 0 chr13 2335997 2336307 -99536862 + AluJb SINE Alu 1 310 -2 1944 264 26 22 chr13 2336314 2337035 -99536134 + L1ME LINE L1 3134 3857 -2358 942 193 5 0 chr13 2337044 2337231 -99535938 + L1ME LINE L1 3973 4160 -2055 540 214 13 120 chr13 2337213 2337530 -99535639 + L1ME2 LINE L1 5881 6163 -1 * 399 305 117 65 chr13 2337661 2338461 -99534708 + L2 LINE L2 2437 3271 -1 21 0 0 0 chr13 2339081 2339102 -99534067 + AT_rich Low_complexity Low_complexity 1 21 0 276 236 39 94 chr13 2339129 2339332 -99533837 + L1ME4a LINE L1 5929 6120 -1 265 319 90 21 chr13 2339804 2339948 -99533221 + MIR SINE MIR 92 245 -17 367 311 57 36 chr13 2340011 2340204 -99532965 - MIR SINE MIR -1 261 65 1287 228 70 48 chr13 2340211 2340668 -99532501 + MLT1C LTR MaLR 1 467 0 180 252 185 50 chr13 2341799 2341918 -99531251 + MIR SINE MIR 128 262 0 2373 107 0 0 chr13 2342095 2342395 -99530774 + AluSq SINE Alu 1 300 -13 201 175 0 0 chr13 2342867 2342907 -99530262 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 236 185 31 15 chr13 2343551 2343616 -99529553 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 693 167 9 0 chr13 2343778 2343886 -99529283 + FLAM_A SINE Alu 1 109 -33 22 0 0 0 chr13 2343888 2343910 -99529259 + AT_rich Low_complexity Low_complexity 1 22 0 2367 106 0 0 chr13 2346116 2346417 -99526752 + AluSg SINE Alu 1 301 -9 4405 168 35 9 chr13 2346501 2347371 -99525798 + L1 LINE L1 3734 4625 -1521 2180 130 0 3 chr13 2347808 2348108 -99525061 - AluSx SINE Alu -13 299 1 258 32 0 0 chr13 2348371 2348402 -99524767 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2245 92 7 0 chr13 2349152 2349434 -99523735 + AluY SINE Alu 1 284 -27 441 0 0 0 chr13 2349434 2349483 -99523686 + (CA)n Simple_repeat Simple_repeat 2 50 0 864 109 109 0 chr13 2350472 2350591 -99522578 + AluSp SINE Alu 1 132 -181 2206 107 7 0 chr13 2350595 2350896 -99522273 + AluSp SINE Alu 3 305 0 204 208 21 21 chr13 2352574 2352622 -99520547 + L2 LINE L2 3225 3272 0 2302 104 0 3 chr13 2354535 2354833 -99518336 + AluSx SINE Alu 1 297 -15 609 26 0 0 chr13 2358156 2358233 -99514936 - L1PA3 LINE L1 -1819 4327 4251 8840 26 1 1 chr13 2358233 2360106 -99513063 + L1PA3 LINE L1 4327 6167 0 760 272 86 0 chr13 2360239 2360471 -99512698 - MIR SINE MIR -3 259 8 280 272 114 88 chr13 2361549 2361821 -99511348 - L3 LINE CR1 -2 1575 1297 309 309 12 12 chr13 2361839 2361923 -99511246 - L3 LINE CR1 -427 1150 1067 239 252 71 31 chr13 2361962 2362089 -99511080 - L1ME4a LINE L1 -21 6100 5969 1525 158 104 6 chr13 2363051 2363379 -99509790 - MER46B DNA MER2_type 0 236 2 2173 102 3 3 chr13 2363440 2363755 -99509414 + AluSx SINE Alu 1 315 0 207 0 0 0 chr13 2363754 2363777 -99509392 + (CA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr13 2363803 2363825 -99509344 + (TG)n Simple_repeat Simple_repeat 1 22 0 303 307 260 0 chr13 2365358 2365550 -99507619 - L1ME4a LINE L1 -227 5943 5702 319 263 21 0 chr13 2365635 2365730 -99507439 - L1ME4a LINE L1 -630 5534 5438 1392 187 75 69 chr13 2367431 2367806 -99505363 - MLT2C1 LTR ERVL 0 397 21 1835 238 23 34 chr13 2368140 2368630 -99504539 + L1M4 LINE L1 3160 3643 -2503 1345 147 54 0 chr13 2368630 2368854 -99504315 + MER46A DNA MER2_type 1 236 0 1835 238 23 34 chr13 2368854 2368980 -99504189 + L1M4 LINE L1 3643 3769 -2377 276 211 18 0 chr13 2368982 2369039 -99504130 + L1M4 LINE L1 3796 3853 -2293 257 128 21 0 chr13 2372495 2372542 -99500627 + GA-rich Low_complexity Low_complexity 3 50 0 1259 166 0 0 chr13 2373190 2373389 -99499780 + AluJo SINE Alu 1 199 -113 226 241 46 35 chr13 2373548 2373635 -99499534 + LTR30 LTR ERV1 556 643 -79 380 108 140 32 chr13 2373636 2373729 -99499440 + LTR12 LTR ERV1 481 583 -131 923 191 43 22 chr13 2373913 2374143 -99499026 + L1MB3 LINE L1 5943 6177 -6 687 216 66 12 chr13 2375917 2376084 -99497085 + FRAM SINE Alu 1 176 0 2165 50 0 0 chr13 2376212 2376473 -99496696 - AluY SINE Alu -14 297 37 196 331 55 24 chr13 2377456 2377583 -99495586 + L2 LINE L2 2869 2999 -273 248 193 70 0 chr13 2377969 2378026 -99495143 + MER5A DNA MER1_type 88 148 -41 426 189 53 0 chr13 2378280 2378375 -99494794 + L1MB8 LINE L1 6078 6177 -1 240 35 0 0 chr13 2378417 2378446 -99494723 + (A)n Simple_repeat Simple_repeat 1 29 0 1472 232 53 48 chr13 2378759 2379282 -99493887 + MER39 LTR ERV1 1 707 0 672 242 21 16 chr13 2380091 2380277 -99492892 + MER5A DNA MER1_type 2 188 -1 277 235 37 25 chr13 2381581 2381662 -99491507 + L1MC5 LINE L1 7844 7925 -36 2459 44 0 7 chr13 2381869 2382166 -99491003 - AluY SINE Alu -16 295 1 583 275 109 22 chr13 2382196 2382472 -99490697 - L1M4 LINE L1 -920 5226 4927 954 179 0 36 chr13 2382656 2382852 -99490317 - AluJb SINE Alu -5 307 119 1802 286 110 30 chr13 2382921 2384105 -99489064 - L1M4 LINE L1 -1559 4587 3309 859 207 35 83 chr13 2384144 2384482 -99488687 - L1MC5 LINE L1 -726 7235 6914 1363 123 107 35 chr13 2384502 2384564 -99488605 - L1PA16 LINE L1 -9 6157 6101 2407 113 19 19 chr13 2384564 2384928 -99488241 + THE1B LTR MaLR 1 364 0 1363 123 107 35 chr13 2384928 2385126 -99488043 - L1PA16 LINE L1 -65 6101 5878 281 314 119 8 chr13 2385375 2385493 -99487676 - L2 LINE L2 -5 3267 3137 223 233 33 17 chr13 2386554 2386614 -99486555 + CT-rich Low_complexity Low_complexity 1 61 0 724 100 40 0 chr13 2386706 2386806 -99486363 - LTR12 LTR ERV1 0 714 611 295 177 70 32 chr13 2386811 2386892 -99486277 - LTR30 LTR ERV1 -75 624 479 1401 106 0 121 chr13 2386892 2387118 -99486051 - LTR12 LTR ERV1 -429 285 94 2268 68 10 0 chr13 2387118 2387411 -99485758 - AluY SINE Alu -15 296 1 1401 106 0 121 chr13 2387411 2387449 -99485720 - LTR12 LTR ERV1 -620 94 53 226 269 0 0 chr13 2387449 2387501 -99485668 - LTR30 LTR ERV1 -670 52 1 448 204 11 0 chr13 2387738 2387826 -99485343 + MER3 DNA MER1_type 1 89 -120 323 295 151 43 chr13 2387856 2388337 -99484832 - L2 LINE L2 -65 3248 2640 235 309 0 0 chr13 2389015 2389083 -99484086 + G-rich Low_complexity Low_complexity 2 69 0 1928 244 81 40 chr13 2389198 2390528 -99482641 - L1MCc LINE L1 -4740 2201 817 2002 122 0 0 chr13 2391547 2391826 -99481343 + AluSx SINE Alu 1 279 -33 200 59 29 0 chr13 2391830 2391864 -99481305 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 433 251 62 72 chr13 2392142 2392336 -99480833 - L1MEd LINE L1 -5191 928 734 2024 101 0 4 chr13 2392954 2393230 -99479939 + AluSx SINE Alu 14 288 -24 22 0 0 0 chr13 2393664 2393686 -99479483 + AT_rich Low_complexity Low_complexity 1 22 0 2143 124 3 0 chr13 2394266 2394572 -99478597 + AluSx SINE Alu 1 307 -5 512 135 0 0 chr13 2495683 2495757 -99377412 - AluS SINE Alu -238 74 1 683 291 51 22 chr13 2495848 2496425 -99376744 - L1MEc LINE L1 -3687 3254 2701 322 189 0 78 chr13 2496436 2496526 -99376643 - L1MEc LINE L1 -5194 1737 1655 251 279 64 17 chr13 2496528 2496700 -99376469 - L1MEc LINE L1 -4963 1460 1281 735 240 56 0 chr13 2496718 2496914 -99376255 - MER3 DNA MER1_type 0 209 3 350 292 125 14 chr13 2497524 2497691 -99375478 - MIR SINE MIR -63 145 11 928 187 155 5 chr13 2498817 2499004 -99374165 - MER58A DNA MER1_type -9 215 1 23 33 0 0 chr13 2499283 2499313 -99373856 + AT_rich Low_complexity Low_complexity 1 30 0 351 143 0 16 chr13 2499971 2500034 -99373135 - HsTC2 DNA Tc2 -13 1885 1824 278 216 40 27 chr13 2500034 2500108 -99373061 + L1ME2 LINE L1 6031 6105 -59 28 71 0 0 chr13 2500108 2500164 -99373005 + AT_rich Low_complexity Low_complexity 1 56 0 1992 156 0 0 chr13 2500676 2500964 -99372205 - AluSx SINE Alu -19 293 6 531 289 228 0 chr13 2501454 2501651 -99371518 - MIR SINE MIR 0 262 21 21 89 0 0 chr13 2501696 2501752 -99371417 + AT_rich Low_complexity Low_complexity 1 56 0 759 255 109 73 chr13 2501901 2501967 -99371202 - MLT1L LTR MaLR 0 615 553 2071 126 3 16 chr13 2501967 2502276 -99370893 + AluJo SINE Alu 1 305 -7 759 255 109 73 chr13 2502276 2502660 -99370509 - MLT1L LTR MaLR -62 553 149 1016 175 7 0 chr13 2503361 2503515 -99369654 + FAM SINE Alu 1 155 -30 2135 114 3 28 chr13 2503516 2503833 -99369336 - AluSx SINE Alu -3 309 1 1551 166 0 51 chr13 2504001 2504332 -99368837 + AluJo SINE Alu 1 316 0 793 141 0 59 chr13 2505566 2505701 -99367468 + AluJo/FLAM SINE Alu 1 127 -185 2399 61 0 7 chr13 2505704 2505997 -99367172 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 2505997 2506021 -99367148 + AT_rich Low_complexity Low_complexity 1 24 0 2904 194 51 27 chr13 2508945 2509443 -99363726 + L1MB8 LINE L1 5450 5972 -206 2199 114 0 0 chr13 2509443 2509740 -99363429 + AluSx SINE Alu 1 297 -15 2904 194 51 27 chr13 2509740 2509953 -99363216 + L1MB8 LINE L1 5972 6178 0 209 321 71 24 chr13 2510318 2510402 -99362767 + MIR3 SINE MIR 99 186 -22 1917 133 14 0 chr13 2510566 2510851 -99362318 - AluSx SINE Alu -10 302 14 2130 130 0 0 chr13 2510962 2511254 -99361915 + AluSg SINE Alu 1 292 -18 1265 90 12 0 chr13 2511597 2511763 -99361406 + AluSq SINE Alu 133 300 -13 579 199 209 71 chr13 2511777 2511973 -99361196 + MIR SINE MIR 5 227 -35 2024 137 0 10 chr13 2511973 2512272 -99360897 + AluJb SINE Alu 1 296 -16 480 224 19 19 chr13 2512272 2512379 -99360790 + AluJb SINE Alu 135 241 -71 1028 181 8 63 chr13 2512387 2512625 -99360544 + AluJo SINE Alu 85 309 -3 23 68 0 0 chr13 2512659 2512703 -99360466 + AT_rich Low_complexity Low_complexity 1 44 0 1742 184 0 3 chr13 2513031 2513333 -99359836 + AluJb SINE Alu 1 301 0 36 87 0 0 chr13 2513489 2513581 -99359588 + AT_rich Low_complexity Low_complexity 1 92 0 1929 226 34 36 chr13 2513997 2514467 -99358702 - MER21B LTR ERV1 -202 661 193 1134 222 89 81 chr13 2514470 2514953 -99358216 + L1MDa LINE L1 492 1074 -5466 2126 138 0 6 chr13 2514957 2515268 -99357901 + AluSx SINE Alu 2 310 -2 246 259 27 62 chr13 2515273 2515385 -99357784 + L1M4 LINE L1 3455 3562 -2584 1887 145 44 7 chr13 2517832 2518129 -99355040 + AluSg SINE Alu 1 308 -2 366 339 6 28 chr13 2518319 2518541 -99354628 + G-rich Low_complexity Low_complexity 1 216 0 1966 128 40 10 chr13 2519075 2519372 -99353797 - AluSx SINE Alu -6 306 1 1085 76 0 0 chr13 2519375 2519507 -99353662 - AluY SINE Alu -179 132 1 255 287 14 77 chr13 2519541 2519684 -99353485 - MER5A DNA MER1_type -21 168 35 507 225 47 16 chr13 2519714 2519843 -99353326 + MER5B DNA MER1_type 17 149 -29 197 324 14 14 chr13 2519925 2519996 -99353173 - MER5B DNA MER1_type -87 91 21 2155 93 0 4 chr13 2520137 2520415 -99352754 - AluY SINE Alu -6 305 29 1553 251 68 38 chr13 2520715 2521732 -99351437 - L1ME3A LINE L1 -213 5957 4724 1071 193 51 77 chr13 2521733 2521850 -99351319 + MLT1A1 LTR MaLR 1 120 -245 1581 88 5 5 chr13 2521850 2522065 -99351104 - AluSc SINE Alu -8 301 87 1071 193 51 77 chr13 2522065 2522344 -99350825 + MLT1A1 LTR MaLR 120 405 40 221 0 35 0 chr13 2522344 2522373 -99350796 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1846 153 0 4 chr13 2522373 2522654 -99350515 - AluSx SINE Alu -32 280 1 1071 193 51 77 chr13 2522654 2522693 -99350476 + MLT1A1 LTR MaLR 322 360 -5 384 243 56 0 chr13 2522696 2522803 -99350366 - L1ME3A LINE L1 -1417 4729 4617 279 0 0 0 chr13 2522814 2522845 -99350324 + (A)n Simple_repeat Simple_repeat 1 31 0 2147 186 34 5 chr13 2522873 2523319 -99349850 - L1MC1 LINE L1 -9 6258 5800 892 151 73 28 chr13 2523322 2523501 -99349668 - MER46A DNA MER2_type -4 232 46 4018 204 25 16 chr13 2523512 2524761 -99348408 - L1MC1 LINE L1 -562 5705 4440 2233 75 4 7 chr13 2524761 2525062 -99348107 - AluY SINE Alu 0 300 1 4018 204 25 16 chr13 2525062 2525293 -99347876 - L1MC1 LINE L1 -1827 4440 4213 403 254 167 4 chr13 2525281 2525509 -99347660 - L1MC1 LINE L1 -3275 2805 2541 * 935 154 77 16 chr13 2525515 2525697 -99347472 - MER21B LTR ERV1 -364 499 307 715 118 133 0 chr13 2525771 2525906 -99347263 - MER21A LTR ERV1 -778 153 1 569 159 45 89 chr13 2525906 2526063 -99347106 - MER21A-int LTR ERV1 0 4191 4042 1348 148 70 0 chr13 2526080 2526350 -99346819 - L1MA8 LINE L1 -22 6269 5981 405 288 93 0 chr13 2526492 2526610 -99346559 + MIR SINE MIR 110 238 -24 32 75 0 0 chr13 2527248 2527315 -99345854 + AT_rich Low_complexity Low_complexity 1 67 0 2507 84 0 0 chr13 2527336 2527647 -99345522 - AluY SINE Alu 0 311 1 2425 98 0 3 chr13 2528735 2529041 -99344128 + AluSx SINE Alu 1 305 -7 276 318 31 0 chr13 2531590 2531719 -99341450 - L1MC1 LINE L1 -5936 134 2 735 148 39 23 chr13 2531858 2531986 -99341183 - FLAM_C SINE Alu -3 130 1 316 189 132 0 chr13 2532009 2532133 -99341036 - L1MEd LINE L1 -4739 1321 895 247 325 97 0 chr13 2532630 2532744 -99340425 - MIR3 SINE MIR -2 206 82 1777 159 31 3 chr13 2533157 2533446 -99339723 + AluJb SINE Alu 6 302 -10 995 112 22 39 chr13 2534441 2534620 -99338549 - THE1C LTR MaLR 0 375 200 258 267 36 67 chr13 2534618 2534783 -99338386 - LTR16A LTR ERVL -228 222 63 * 378 224 95 20 chr13 2535128 2535275 -99337894 - MLT1H LTR MaLR 0 549 392 2084 108 0 69 chr13 2535710 2536043 -99337126 + AluSx SINE Alu 1 310 -2 3471 75 37 0 chr13 2536090 2536571 -99336598 - L1PA4 LINE L1 0 6155 5657 2097 61 0 41 chr13 2536906 2537201 -99335968 + L1PA8 LINE L1 5887 6169 -3 232 237 52 41 chr13 2537994 2538091 -99335078 - MLT1-int LTR MaLR -1269 102 5 2550 159 61 10 chr13 2538104 2538593 -99334576 + L1MB7 LINE L1 5671 6184 0 269 235 103 7 chr13 2538593 2538723 -99334446 - MLT2E LTR ERVL -14 614 472 802 243 35 31 chr13 2538851 2539106 -99334063 - MLT2E LTR ERVL -353 275 20 305 349 105 0 chr13 2539966 2540138 -99333031 - L1MC/D LINE L1 -2174 5634 5445 636 242 144 43 chr13 2540420 2540788 -99332381 - HAL1 LINE L1 -1514 993 589 307 270 138 20 chr13 2540790 2540942 -99332227 - L2 LINE L2 -231 3082 2913 2156 121 0 3 chr13 2541068 2541366 -99331803 - AluSx SINE Alu -4 308 12 318 265 114 58 chr13 2541443 2541577 -99331592 - L1MC/D LINE L1 -1065 5081 4956 2349 57 7 4 chr13 2541577 2541899 -99331270 + AluY SINE Alu 1 323 0 318 265 114 58 chr13 2541899 2542106 -99331063 - L1MC/D LINE L1 -1190 4956 4721 1937 152 0 7 chr13 2542150 2542446 -99330723 + AluJb SINE Alu 1 294 -18 2160 108 10 0 chr13 2543607 2543895 -99329274 + AluSx SINE Alu 1 291 -21 1797 130 41 0 chr13 2544853 2545143 -99328026 - AluSx SINE Alu 0 301 1 773 189 0 0 chr13 2545185 2545312 -99327857 + FLAM_C SINE Alu 1 127 -16 1729 167 7 7 chr13 2545328 2545638 -99327531 + AluSx SINE Alu 11 312 0 2378 81 3 3 chr13 2546183 2546490 -99326679 - AluSq SINE Alu -6 307 1 204 163 0 23 chr13 2546497 2546540 -99326629 + T-rich Low_complexity Low_complexity 4 45 0 26 30 0 0 chr13 2546730 2546763 -99326406 + AT_rich Low_complexity Low_complexity 1 33 0 240 335 45 53 chr13 2547267 2547397 -99325772 + L2 LINE L2 707 836 -2478 2198 90 0 68 chr13 2547397 2547718 -99325451 - AluSx SINE Alu -13 299 1 240 335 45 53 chr13 2547718 2547984 -99325185 + L2 LINE L2 836 1100 -2214 1764 191 33 15 chr13 2548799 2549160 -99324009 + L1M4c LINE L1 1227 1597 -4787 186 43 0 0 chr13 2549160 2549183 -99323986 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1764 191 33 15 chr13 2549183 2549214 -99323955 + L1M4c LINE L1 1597 1626 -4758 2149 125 3 0 chr13 2549215 2549519 -99323650 + AluSx SINE Alu 1 305 -7 6832 235 39 17 chr13 2549519 2552002 -99321167 + L1M4c LINE L1 2125 4666 -1716 1653 203 29 7 chr13 2552051 2552469 -99320700 - L1M4 LINE L1 -1272 4874 4448 2096 156 60 24 chr13 2552638 2552712 -99320457 + L1MB4 LINE L1 5705 5775 -405 1519 158 131 0 chr13 2552712 2553010 -99320159 + MER44D DNA MER2_type 1 607 -2 2096 156 60 24 chr13 2553010 2553389 -99319780 + L1MB4 LINE L1 5775 6174 -6 345 171 11 34 chr13 2553400 2553488 -99319681 + L1MB8 LINE L1 6093 6178 0 1402 199 81 0 chr13 2553500 2553772 -99319397 + AluJb SINE Alu 2 295 -17 300 190 70 60 chr13 2553774 2553874 -99319295 + L1ME3A LINE L1 5901 6001 -169 220 206 270 16 chr13 2554291 2554354 -99318815 - MIR SINE MIR -151 111 33 1024 105 0 0 chr13 2556404 2556537 -99316632 - AluSq/x SINE Alu -179 133 1 978 207 0 6 chr13 2556706 2556880 -99316289 + FAM SINE Alu 2 174 -1 1564 122 5 0 chr13 2557612 2557825 -99315344 - AluSg/x SINE Alu -22 288 75 821 138 0 0 chr13 2558355 2558471 -99314698 + AluSq/x SINE Alu 1 116 -196 324 0 0 0 chr13 2558472 2558508 -99314661 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1543 174 60 3 chr13 2558808 2559090 -99314079 - AluSq SINE Alu -15 298 1 896 234 9 14 chr13 2559311 2559525 -99313644 - MER20 DNA MER1_type -1 218 6 1557 205 21 0 chr13 2559921 2560209 -99312960 + AluJo SINE Alu 1 294 -18 2314 96 0 0 chr13 2560358 2560651 -99312518 - AluSg SINE Alu -17 293 1 1142 288 81 36 chr13 2560701 2561577 -99311592 - L2 LINE L2 -26 3287 2287 275 327 98 72 chr13 2561759 2562105 -99311064 - L2 LINE L2 -55 3217 2863 2132 112 3 7 chr13 2562163 2562459 -99310710 + AluSg SINE Alu 1 295 -15 257 322 39 17 chr13 2562544 2562724 -99310445 + HAL1 LINE L1 223 406 -2101 1441 96 0 0 chr13 2562811 2563019 -99310150 + L1P3 LINE L1 1084 1291 -5170 1683 66 0 0 chr13 2563023 2563251 -99309918 + L1P LINE L1 3500 3727 -2419 27 62 0 0 chr13 2563353 2563401 -99309768 + AT_rich Low_complexity Low_complexity 1 48 0 285 228 0 0 chr13 2564681 2564738 -99308431 + MER5A DNA MER1_type 132 188 -1 2465 80 0 0 chr13 2565507 2565809 -99307360 + AluY SINE Alu 1 302 -9 251 353 26 0 chr13 2566853 2566941 -99306228 + MIR SINE MIR 59 146 -62 204 100 320 0 chr13 2566957 2567007 -99306162 - MER5C DNA MER1_type -5 319 254 206 320 120 0 chr13 2567070 2567170 -99305999 - MER5C DNA MER1_type -208 116 5 314 218 78 97 chr13 2567494 2567751 -99305418 - L1ME4a LINE L1 -34 6087 5836 201 186 17 68 chr13 2568259 2568318 -99304851 + T-rich Low_complexity Low_complexity 6 61 0 1071 76 0 0 chr13 2568320 2568451 -99304718 - AluSg SINE Alu -179 131 1 401 219 0 0 chr13 2568455 2568537 -99304632 + MER69 DNA AcHobo 2443 2524 -2 246 386 53 12 chr13 2568580 2568751 -99304418 + L2 LINE L2 1789 1966 -1348 2342 90 0 7 chr13 2570134 2570433 -99302736 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 2571233 2571256 -99301913 + (T)n Simple_repeat Simple_repeat 1 23 0 432 299 47 0 chr13 2572631 2572758 -99300411 - L2 LINE L2 -1 3312 3180 980 212 161 20 chr13 2573307 2573599 -99299570 - MER46C DNA MER2_type -1 337 5 207 0 0 0 chr13 2575412 2575435 -99297734 + (TA)n Simple_repeat Simple_repeat 2 24 0 2297 66 49 0 chr13 2575435 2575722 -99297447 - AluY SINE Alu -10 301 1 1476 230 33 9 chr13 2576287 2576618 -99296551 - MER58B DNA MER1_type -2 339 1 524 241 43 0 chr13 2576971 2577112 -99296057 + MIR SINE MIR 92 238 -24 486 342 5 5 chr13 2577342 2577529 -99295640 + MARNA DNA Mariner 43 229 -357 234 207 0 17 chr13 2577535 2577593 -99295576 - L1MCa LINE L1 -4363 2063 2007 326 325 31 19 chr13 2578743 2578903 -99294266 - L2 LINE L2 -1370 1944 1783 2016 194 54 71 chr13 2578956 2579476 -99293693 - MER9 LTR ERVK 0 511 1 25497 171 19 15 chr13 2579476 2584708 -99288461 - HERVK9 LTR ERVK 0 7321 1626 3235 164 38 53 chr13 2584694 2585617 -99287552 - HERVK9 LTR ERVK -5046 899 1 * 2152 186 58 44 chr13 2585617 2586121 -99287048 - MER9 LTR ERVK 0 511 1 328 240 132 83 chr13 2586125 2586298 -99286871 + L1MC/D LINE L1 5448 5642 -2166 2137 118 0 30 chr13 2586298 2586603 -99286566 + AluSx SINE Alu 1 296 -16 328 240 132 83 chr13 2586603 2586717 -99286452 + L1MC/D LINE L1 5642 5749 -2059 518 181 0 0 chr13 2587630 2587713 -99285456 - FRAM/FAM SINE Alu -94 82 1 243 0 0 0 chr13 2587732 2587759 -99285410 + (A)n Simple_repeat Simple_repeat 1 27 0 347 283 44 44 chr13 2588167 2588280 -99284889 + MIR SINE MIR 29 141 -67 310 294 35 12 chr13 2588386 2588471 -99284698 + L1MA4A LINE L1 834 920 -5929 13694 181 82 12 chr13 2588471 2588506 -99284663 + L1MA4A LINE L1 2081 2112 -4893 1481 130 123 53 chr13 2588506 2588790 -99284379 - AluSg SINE Alu -6 304 1 13694 181 82 12 chr13 2588790 2593336 -99279833 + L1MA4A LINE L1 2112 6982 -23 2471 245 128 50 chr13 2593331 2593697 -99279472 + HAL1 LINE L1 1171 1507 -1000 * 774 197 31 0 chr13 2593697 2593824 -99279345 - FLAM_A SINE Alu -2 131 1 2471 245 128 50 chr13 2593824 2594390 -99278779 + HAL1 LINE L1 1507 2220 -287 2131 133 3 3 chr13 2594390 2594698 -99278471 + AluSx SINE Alu 1 308 -4 2471 245 128 50 chr13 2594698 2594966 -99278203 + HAL1 LINE L1 2220 2466 -41 2380 58 7 3 chr13 2594966 2595261 -99277908 - AluY SINE Alu -15 296 1 401 219 0 0 chr13 2595265 2595347 -99277822 + MER69 DNA AcHobo 2443 2524 -2 246 386 53 12 chr13 2595390 2595561 -99277608 + L2 LINE L2 1789 1966 -1348 2271 97 0 10 chr13 2596944 2597244 -99275925 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 2598044 2598067 -99275102 + (T)n Simple_repeat Simple_repeat 1 23 0 432 299 47 0 chr13 2599442 2599569 -99273600 - L2 LINE L2 -1 3312 3180 407 200 13 0 chr13 2600118 2600193 -99272976 - MER46C DNA MER2_type -1 337 262 1257 156 66 5 chr13 2600299 2600511 -99272658 - AluJb SINE Alu -3 309 85 602 230 15 50 chr13 2600513 2600713 -99272456 - L1M4 LINE L1 -2091 4055 3863 681 140 5 10 chr13 2600719 2600984 -99272185 - AluJb SINE Alu 0 312 1 484 263 79 44 chr13 2600987 2601215 -99271954 - L1M4 LINE L1 -2286 3860 3625 422 219 0 0 chr13 2602024 2602106 -99271063 - FRAM/FAM SINE Alu -95 81 1 234 0 0 0 chr13 2602126 2602152 -99271017 + (A)n Simple_repeat Simple_repeat 1 26 0 513 260 47 39 chr13 2602560 2602687 -99270482 + MIR3 SINE MIR 29 156 -52 745 321 87 44 chr13 2602864 2603156 -99270013 + L1MEd LINE L1 78 356 -5763 2211 82 0 36 chr13 2603156 2603459 -99269710 + AluSq SINE Alu 1 292 -21 745 321 87 44 chr13 2603459 2603708 -99269461 + L1MEd LINE L1 356 642 -5477 890 233 17 0 chr13 2603835 2604011 -99269158 - AluJo SINE Alu -17 295 117 23 0 0 0 chr13 2604018 2604041 -99269128 + AT_rich Low_complexity Low_complexity 1 23 0 2184 109 3 0 chr13 2604041 2604334 -99268835 - AluSg SINE Alu -16 294 1 199 365 17 26 chr13 2605397 2605512 -99267657 - L3 LINE CR1 -81 1496 1383 276 228 158 10 chr13 2606564 2606665 -99266504 + MER112 DNA MER1_type 101 216 -44 1517 290 119 58 chr13 2607203 2607328 -99265841 - L2 LINE L2 -11 3302 3186 2103 115 10 10 chr13 2607328 2607632 -99265537 - AluSg SINE Alu -6 304 1 1517 290 119 58 chr13 2607632 2608650 -99264519 - L2 LINE L2 -127 3186 2047 749 47 0 0 chr13 2608812 2608898 -99264271 - AluSg/x SINE Alu -8 304 219 2073 69 0 36 chr13 2608898 2609173 -99263996 - AluSg1 SINE Alu -44 265 1 1984 144 20 0 chr13 2609561 2609853 -99263316 + AluSx SINE Alu 1 298 -14 1777 144 30 4 chr13 2610044 2610315 -99262854 + AluJo SINE Alu 1 278 -34 1190 257 121 66 chr13 2610315 2610467 -99262702 + L1MCc LINE L1 1177 1319 -5803 2369 75 0 3 chr13 2610467 2610762 -99262407 + AluY SINE Alu 1 294 -17 1190 257 121 66 chr13 2610762 2611547 -99261622 + L1MCc LINE L1 1319 2423 -4699 2172 87 31 3 chr13 2611547 2611835 -99261334 + AluSx SINE Alu 1 296 -16 1190 257 121 66 chr13 2611835 2612105 -99261064 + L1MCc LINE L1 2423 2677 -4445 1839 171 0 0 chr13 2612231 2612523 -99260646 + AluJo SINE Alu 1 292 -20 1885 212 74 4 chr13 2612529 2613001 -99260168 + L1MC4 LINE L1 7122 7626 -416 1816 162 7 10 chr13 2613003 2613300 -99259869 + AluSx SINE Alu 1 296 -16 644 183 7 0 chr13 2613300 2613437 -99259732 + GA-rich Low_complexity Low_complexity 1 138 0 201 111 0 0 chr13 2613437 2613464 -99259705 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 476 237 17 0 chr13 2613464 2613582 -99259587 + L1MC4 LINE L1 7613 7732 -310 457 202 36 0 chr13 2613588 2613672 -99259497 - Tigger5 DNA MER2_type 0 2323 2237 374 167 28 14 chr13 2613726 2613798 -99259371 - Tigger5 DNA MER2_type 0 2323 2251 257 226 19 0 chr13 2613768 2613821 -99259348 - Tigger5 DNA MER2_type -2268 55 2 * 1015 215 98 7 chr13 2613823 2614110 -99259059 + L1MC4 LINE L1 7741 8041 -1 1007 190 0 0 chr13 2614117 2614291 -99258878 + FRAM SINE Alu 1 172 -4 442 237 20 33 chr13 2614294 2614446 -99258723 + L1MCc LINE L1 2837 2986 -4136 602 209 44 21 chr13 2614486 2614616 -99258553 + L1M1 LINE L1 3537 3671 -3894 1769 159 72 30 chr13 2614616 2614950 -99258219 + MER7A DNA MER2_type 1 346 0 602 209 44 21 chr13 2614950 2614991 -99258178 + L1M1 LINE L1 3671 3710 -3855 2051 134 3 13 chr13 2615004 2615310 -99257859 + AluSx SINE Alu 1 303 -9 683 329 175 14 chr13 2615363 2616127 -99257042 - L2 LINE L2 -1796 1518 573 2351 80 10 13 chr13 2616157 2616459 -99256710 - AluSg SINE Alu 0 310 1 202 306 116 16 chr13 2618040 2618161 -99255008 - L3 LINE CR1 -139 1438 1306 23 54 0 0 chr13 2618802 2618839 -99254330 + GC_rich Low_complexity Low_complexity 1 37 0 201 183 32 65 chr13 2618841 2618934 -99254235 + G-rich Low_complexity Low_complexity 3 92 0 31 82 0 0 chr13 2618983 2619056 -99254113 + GC_rich Low_complexity Low_complexity 1 73 0 38 61 0 0 chr13 2619144 2619210 -99253959 + GC_rich Low_complexity Low_complexity 1 66 0 305 223 33 12 chr13 2619414 2619665 -99253504 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 1742 168 10 7 chr13 2620533 2620825 -99252344 + AluJo SINE Alu 16 308 -4 210 321 179 28 chr13 2621595 2621807 -99251362 - L2 LINE L2 -849 2465 2222 1502 170 93 14 chr13 2622284 2622573 -99250596 + AluJb SINE Alu 1 312 0 1636 187 7 14 chr13 2622633 2622927 -99250242 - AluJb SINE Alu -20 292 1 2203 138 0 0 chr13 2623013 2623311 -99249858 - AluSx SINE Alu -10 302 5 306 332 108 13 chr13 2623504 2623820 -99249349 + L1MC4a LINE L1 4965 5310 -836 1653 92 176 44 chr13 2623820 2624093 -99249076 + AluSg1 SINE Alu 1 309 0 691 281 204 18 chr13 2624280 2624672 -99248497 + L1MC4a LINE L1 5495 5959 -1849 2421 80 0 46 chr13 2625434 2625759 -99247410 + AluSp SINE Alu 1 310 -3 681 186 106 53 chr13 2626017 2626085 -99247084 - MSTD LTR MaLR 0 396 333 2372 104 3 0 chr13 2626085 2626383 -99246786 + AluSp SINE Alu 1 299 -14 681 186 106 53 chr13 2626383 2626502 -99246667 - MSTD LTR MaLR -63 333 199 501 159 53 18 chr13 2626531 2626644 -99246525 - MSTD LTR MaLR -279 117 1 235 290 29 0 chr13 2626924 2626993 -99246176 + L1MC/D LINE L1 5713 5783 -2025 2308 86 3 7 chr13 2627408 2627700 -99245469 + AluSx SINE Alu 1 291 -21 526 194 31 0 chr13 2627979 2628108 -99245061 + CT-rich Low_complexity Low_complexity 4 136 0 219 271 4 4 chr13 2629546 2629620 -99243549 + MIR SINE MIR 79 153 -55 493 209 15 45 chr13 2630269 2630403 -99242766 + MER5B DNA MER1_type 8 137 -41 217 274 208 19 chr13 2630681 2630787 -99242382 - MER5A DNA MER1_type 0 189 64 1893 116 65 34 chr13 2630843 2631137 -99242032 - AluJb SINE Alu -9 303 1 247 319 0 14 chr13 2631137 2631209 -99241960 - MER5A DNA MER1_type -114 75 5 547 248 35 25 chr13 2631318 2631516 -99241653 - L1M4 LINE L1 -1379 4767 4568 247 289 158 9 chr13 2631630 2631744 -99241425 - MIR3 SINE MIR -46 162 32 349 363 0 11 chr13 2633444 2633623 -99239546 + (CACG)n Simple_repeat Simple_repeat 1 177 0 * 489 309 3 0 chr13 2633492 2634134 -99239035 + (CA)n Simple_repeat Simple_repeat 1 643 0 427 333 3 3 chr13 2634155 2634476 -99238693 + (CA)n Simple_repeat Simple_repeat 1 321 0 301 274 76 6 chr13 2634433 2634590 -99238579 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 440 297 108 19 chr13 2634668 2634880 -99238289 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 2635749 2635827 -99237342 + L2 LINE L2 2420 2498 -816 2653 33 0 3 chr13 2638751 2639053 -99234116 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 2639501 2639611 -99233558 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 2639816 2640119 -99233050 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 2640119 2640436 -99232733 + AluSg SINE Alu 1 298 -12 2349 108 0 0 chr13 2642026 2642322 -99230847 - AluSq SINE Alu -12 301 6 1962 138 3 39 chr13 2642611 2642923 -99230246 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 2643008 2643465 -99229704 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 2643879 2643984 -99229185 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 2644592 2644636 -99228533 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 2645246 2645269 -99227900 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 2645616 2645719 -99227450 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 2645722 2645774 -99227395 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 2645778 2646235 -99226934 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 2646236 2646371 -99226798 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 2646424 2646518 -99226651 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 2646581 2646660 -99226509 + MIR3 SINE MIR 82 160 -48 522 291 101 11 chr13 2646688 2646877 -99226292 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 2647438 2647739 -99225430 - AluSx SINE Alu -12 300 1 2430 96 0 0 chr13 2648201 2648502 -99224667 - AluSg SINE Alu -9 301 1 534 189 117 0 chr13 2648510 2648621 -99224548 - AluJb SINE Alu -188 124 1 315 262 139 25 chr13 2648621 2648743 -99224426 + L1MC4a LINE L1 5778 5913 -1895 380 260 38 46 chr13 2649182 2649399 -99223770 + L1MEc LINE L1 1854 2040 -4500 578 315 46 0 chr13 2649454 2649673 -99223496 + MIR SINE MIR 34 262 0 893 71 0 0 chr13 2649677 2649824 -99223345 - Alu SINE Alu 0 315 169 2038 276 131 21 chr13 2650017 2651817 -99221352 + HAL1 LINE L1 1 2023 -484 597 82 0 0 chr13 2651835 2651920 -99221249 - AluY SINE Alu -8 303 219 303 328 12 12 chr13 2652040 2652211 -99220958 + (CCCA)n Simple_repeat Simple_repeat 3 173 0 * 427 315 6 0 chr13 2652123 2652301 -99220868 + (CA)n Simple_repeat Simple_repeat 1 179 0 301 274 76 6 chr13 2652258 2652415 -99220754 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 * 440 297 108 19 chr13 2652493 2652705 -99220464 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 2653573 2653651 -99219518 + L2 LINE L2 2420 2498 -816 2688 33 0 0 chr13 2656575 2656876 -99216293 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 2657324 2657434 -99215735 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 2657639 2657942 -99215227 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 2657942 2658259 -99214910 + AluSg SINE Alu 1 298 -12 2184 114 7 0 chr13 2659849 2660138 -99213031 - AluSq SINE Alu -12 301 11 1962 138 3 39 chr13 2660434 2660746 -99212423 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 2660831 2661288 -99211881 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 2661701 2661806 -99211363 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 2662414 2662458 -99210711 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 2663068 2663091 -99210078 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 2663438 2663541 -99209628 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 2663544 2663596 -99209573 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 2663600 2664057 -99209112 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 2664058 2664193 -99208976 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 2664246 2664340 -99208829 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 2664403 2664482 -99208687 + MIR3 SINE MIR 82 160 -48 532 289 95 11 chr13 2664510 2664700 -99208469 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 2665263 2665564 -99207605 - AluSx SINE Alu -12 300 1 2389 92 0 3 chr13 2666026 2666330 -99206839 - AluSx SINE Alu -9 303 1 4040 200 78 33 chr13 2666331 2666589 -99206580 + L1MB7 LINE L1 4095 4340 -1844 1077 141 77 0 chr13 2666589 2666759 -99206410 + U2 snRNA snRNA 5 187 -1 4040 200 78 33 chr13 2666759 2668200 -99204969 + L1MB7 LINE L1 4340 5901 -283 417 81 242 0 chr13 2668200 2668262 -99204907 - MADE1 DNA Mariner 0 80 4 4040 200 78 33 chr13 2668262 2668560 -99204609 + L1MB7 LINE L1 5901 6184 0 575 221 58 0 chr13 2668557 2668711 -99204458 + L1M4 LINE L1 3758 3920 -2226 * 307 221 96 10 chr13 2668701 2668805 -99204364 - L1M4 LINE L1 -2154 3992 3880 * 1652 198 121 5 chr13 2668783 2669188 -99203981 + L1MD1 LINE L1 5783 6234 -8 2457 82 0 0 chr13 2669232 2669538 -99203631 - AluY SINE Alu -5 306 1 233 190 0 35 chr13 2669748 2669806 -99203363 - L1MC4 LINE L1 -1339 6703 6648 26 50 0 0 chr13 2670339 2670379 -99202790 + AT_rich Low_complexity Low_complexity 1 40 0 3088 175 30 25 chr13 2670513 2671103 -99202066 + MER7C DNA MER2_type 10 602 0 1398 141 77 12 chr13 2671103 2671350 -99201819 - Tigger3(Golem) DNA MER2_type -2744 285 23 1347 94 0 0 chr13 2671360 2671541 -99201628 - AluY SINE Alu -4 307 127 879 195 39 66 chr13 2672540 2672796 -99200373 + L1MC5 LINE L1 7176 7424 -537 1783 194 38 3 chr13 2673114 2673455 -99199714 + L1MB7 LINE L1 5730 6082 -102 4771 112 12 155 chr13 2673455 2675029 -99198140 - pTR5 LTR ERV1 0 2606 1524 520 53 11 117 chr13 2675037 2675066 -99198103 + L1MB7 LINE L1 6089 6119 -65 2134 107 3 3 chr13 2675066 2675357 -99197812 + AluSg SINE Alu 2 292 -18 520 53 11 117 chr13 2675357 2675421 -99197748 + L1MB7 LINE L1 6119 6172 -12 2391 91 3 0 chr13 2675999 2676295 -99196874 - AluSc SINE Alu -12 297 1 575 253 35 29 chr13 2676542 2676716 -99196453 - L1MC4 LINE L1 -2085 5723 5549 266 264 86 0 chr13 2676730 2676893 -99196276 - L1MC4 LINE L1 -723 5439 5263 1121 256 20 8 chr13 2676924 2677401 -99195768 + MER90 LTR ERV1 74 614 0 324 248 95 22 chr13 2677401 2677538 -99195631 - L1MC4 LINE L1 -881 5265 5119 2104 139 0 16 chr13 2677592 2677908 -99195261 - AluSx SINE Alu -1 311 1 187 278 0 37 chr13 2678010 2678064 -99195105 + L2 LINE L2 3008 3059 -213 7647 95 8 6 chr13 2678208 2680037 -99193132 - L1PA8 LINE L1 0 6172 4340 2356 110 0 0 chr13 2680109 2680418 -99192751 + AluSg1 SINE Alu 1 309 0 2193 113 0 3 chr13 2680699 2680991 -99192178 - AluSg SINE Alu -19 291 1 2397 81 3 0 chr13 2682000 2682296 -99190873 - AluSx SINE Alu -7 305 9 2382 38 11 3 chr13 2682694 2682981 -99190188 + AluY SINE Alu 1 289 -22 1314 193 60 60 chr13 2734018 2734172 -99138997 + MER58B DNA MER1_type 11 164 -2256 2273 110 0 0 chr13 2734172 2734472 -99138697 - AluSp SINE Alu -13 300 1 1314 193 60 60 chr13 2734472 2734648 -99138521 + MER58B DNA MER1_type 163 341 0 21 36 0 0 chr13 2734998 2735026 -99138143 + AT_rich Low_complexity Low_complexity 1 28 0 362 289 134 25 chr13 2735252 2735491 -99137678 - L2 LINE L2 -824 2490 2226 1907 223 60 10 chr13 2736796 2737293 -99135876 + Charlie1b DNA MER1_type 2 523 0 2026 111 19 26 chr13 2738391 2738698 -99134471 + AluSx SINE Alu 1 305 -7 276 185 420 17 chr13 2739344 2739463 -99133706 + L1MC5 LINE L1 7747 7913 -48 797 159 0 15 chr13 2739561 2739693 -99133476 - FLAM_C SINE Alu -3 130 1 21 0 0 0 chr13 2739847 2739868 -99133301 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 2741705 2741728 -99131441 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 2742239 2742264 -99130905 + (T)n Simple_repeat Simple_repeat 1 25 0 31 0 0 0 chr13 2743626 2743657 -99129512 + AT_rich Low_complexity Low_complexity 1 31 0 214 337 117 42 chr13 2743657 2743756 -99129413 - L2 LINE L2 -36 3236 3146 1119 188 119 50 chr13 2743756 2744076 -99129093 + MER2 DNA MER2_type 3 344 0 214 337 117 42 chr13 2744076 2744285 -99128884 - L2 LINE L2 -126 3146 2905 478 187 134 0 chr13 2744683 2744817 -99128352 + L1M4 LINE L1 4263 4414 -1732 1034 194 45 5 chr13 2744818 2745019 -99128150 + AluJb SINE Alu 84 292 -20 1752 174 7 7 chr13 2745114 2745396 -99127773 + AluJb SINE Alu 1 282 -30 23 0 0 0 chr13 2745396 2745419 -99127750 + AT_rich Low_complexity Low_complexity 1 23 0 717 220 13 13 chr13 2745437 2745596 -99127573 - FRAM SINE Alu -11 165 7 21 36 0 0 chr13 2745762 2745790 -99127379 + AT_rich Low_complexity Low_complexity 1 28 0 395 100 0 0 chr13 2746127 2746177 -99126992 - MER8 DNA MER2_type 0 239 190 * 2398 148 39 11 chr13 2746172 2746610 -99126559 + Tigger2 DNA MER2_type 2269 2718 0 2374 164 25 39 chr13 2747088 2747601 -99125568 - L1MB8 LINE L1 -1 6177 5672 889 186 45 45 chr13 2747603 2747802 -99125367 - MER20 DNA MER1_type -20 199 1 1651 167 25 41 chr13 2747822 2748026 -99125143 - AluSx SINE Alu 0 312 113 1952 125 24 53 chr13 2748026 2748401 -99124768 - THE1B LTR MaLR 0 364 1 1651 167 25 41 chr13 2748401 2748513 -99124656 - AluSx SINE Alu -199 113 1 1488 203 119 21 chr13 2748908 2749489 -99123680 - Charlie2 DNA MER1_type -322 2540 1903 240 250 111 9 chr13 2749527 2749635 -99123534 - Charlie2 DNA MER1_type -2544 318 200 2118 115 60 3 chr13 2750020 2750351 -99122818 + MER41C LTR ERV1 1 350 -204 456 151 24 24 chr13 2750351 2750477 -99122692 + (TA)n Simple_repeat Simple_repeat 1 126 0 1052 138 76 57 chr13 2750486 2750696 -99122473 + MER41C LTR ERV1 341 554 0 1326 269 116 14 chr13 2751057 2751163 -99122006 + L2 LINE L2 2552 2646 -667 1952 126 13 23 chr13 2751163 2751472 -99121697 - AluSx SINE Alu -6 306 1 1326 269 116 14 chr13 2751472 2752046 -99121123 + L2 LINE L2 2646 3307 -6 2421 89 0 0 chr13 2752768 2753072 -99120097 - AluSc SINE Alu -5 304 1 573 291 0 7 chr13 2754241 2754389 -99118780 + MIR SINE MIR 6 152 -110 611 274 185 71 chr13 2757287 2757506 -99115663 - L2 LINE L2 -372 2942 2749 2191 128 0 0 chr13 2757506 2757812 -99115357 - AluSx SINE Alu -6 306 1 611 274 185 71 chr13 2757812 2758253 -99114916 - L2 LINE L2 -565 2749 2207 1665 120 0 0 chr13 2758315 2758532 -99114637 + AluSq SINE Alu 3 219 -94 275 200 71 24 chr13 2758571 2758656 -99114513 + L1 LINE L1 4882 4970 -1176 1369 174 4 4 chr13 2758827 2759069 -99114100 + L1MD3 LINE L1 7732 7973 -22 512 287 125 23 chr13 2759108 2759144 -99114025 + L1MC1 LINE L1 5188 5219 -1178 1530 125 225 36 chr13 2759144 2759504 -99113665 - MSTA LTR MaLR 0 428 1 512 287 125 23 chr13 2759504 2759885 -99113284 + L1MC1 LINE L1 5219 5649 -748 2142 144 0 0 chr13 2759900 2760199 -99112970 + AluSx SINE Alu 1 299 -13 2047 135 75 28 chr13 2761300 2761700 -99111469 + L1MC1 LINE L1 5906 6324 -9 1711 148 47 7 chr13 2764028 2764305 -99108864 - AluSx SINE Alu -23 289 2 38 51 0 0 chr13 2764823 2764882 -99108287 + AT_rich Low_complexity Low_complexity 1 59 0 2130 110 0 7 chr13 2765044 2765343 -99107826 - AluSq SINE Alu -16 297 1 2322 89 0 0 chr13 2765600 2765891 -99107278 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr13 2766266 2766295 -99106874 + AT_rich Low_complexity Low_complexity 1 29 0 390 224 0 0 chr13 2767468 2767535 -99105634 - MER58A DNA MER1_type -39 68 2 2045 167 129 21 chr13 2767906 2767989 -99105180 + MLT1C LTR MaLR 1 74 -393 2143 111 24 0 chr13 2767989 2768278 -99104891 + AluSx SINE Alu 1 296 -16 2045 167 129 21 chr13 2768278 2768614 -99104555 + MLT1C LTR MaLR 74 465 -2 2052 143 0 13 chr13 2768856 2769170 -99103999 + AluSx SINE Alu 1 310 -2 183 156 0 0 chr13 2769501 2769533 -99103636 + (CATA)n Simple_repeat Simple_repeat 3 34 0 508 288 93 42 chr13 2769595 2769810 -99103359 + MIR SINE MIR 23 248 -14 1588 213 7 7 chr13 2772181 2772477 -99100692 - AluJb SINE Alu -16 296 1 283 260 40 0 chr13 2772681 2772781 -99100388 - Charlie2 DNA MER1_type -158 2704 2601 2400 88 0 3 chr13 2773040 2773346 -99099823 - AluSg SINE Alu 0 310 6 2454 77 0 3 chr13 2773397 2773707 -99099462 + AluY SINE Alu 1 309 -2 654 153 0 0 chr13 2773716 2773814 -99099355 - FRAM SINE Alu -37 139 42 2565 142 42 35 chr13 2773814 2774055 -99099114 + L1MB8 LINE L1 5649 5887 -291 1950 129 3 3 chr13 2774055 2774341 -99098828 + AluSx SINE Alu 5 290 -22 2565 142 42 35 chr13 2774341 2774620 -99098549 + L1MB8 LINE L1 5887 6173 -5 828 167 0 35 chr13 2774626 2774770 -99098399 + AluJo SINE Alu 3 141 -171 2058 145 3 3 chr13 2774770 2775080 -99098089 + AluSx SINE Alu 1 310 -2 1787 154 11 4 chr13 2775267 2775576 -99097593 - AluJb SINE Alu 0 312 2 468 192 10 39 chr13 2776323 2776427 -99096742 + MER31A LTR ERV1 353 453 -32 438 223 194 23 chr13 2777094 2777262 -99095907 - MIR SINE MIR -16 246 41 2026 120 7 7 chr13 2779955 2780247 -99092922 + AluSx SINE Alu 1 292 -20 240 259 116 0 chr13 2781746 2781858 -99091311 - L1ME4a LINE L1 -65 6056 5932 26 64 0 0 chr13 2783273 2783320 -99089849 + AT_rich Low_complexity Low_complexity 1 47 0 259 276 95 48 chr13 2783373 2783478 -99089691 + MIR SINE MIR 38 147 -61 2193 117 0 0 chr13 2784889 2785179 -99087990 + AluSx SINE Alu 1 290 -22 443 250 132 7 chr13 2785359 2785495 -99087674 - MIR SINE MIR -108 154 2 1436 198 59 7 chr13 2785563 2785851 -99087318 + AluJo SINE Alu 1 303 -9 1611 186 26 10 chr13 2786498 2786804 -99086365 + AluJb SINE Alu 1 311 -1 207 193 23 45 chr13 2787635 2787723 -99085446 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chr13 2787913 2787942 -99085227 + AT_rich Low_complexity Low_complexity 1 29 0 1821 139 16 32 chr13 2788115 2788425 -99084744 + AluJb SINE Alu 1 305 -7 532 187 41 57 chr13 2788436 2788559 -99084610 + FRAM SINE Alu 2 122 -54 930 176 29 29 chr13 2788787 2788992 -99084177 - MER3 DNA MER1_type -3 206 2 352 300 25 0 chr13 2789058 2789178 -99083991 + L1ME1 LINE L1 6039 6161 -5 25 75 0 0 chr13 2790111 2790164 -99083005 + AT_rich Low_complexity Low_complexity 1 53 0 2262 102 3 3 chr13 2790246 2790550 -99082619 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr13 2790655 2790684 -99082485 + AT_rich Low_complexity Low_complexity 1 29 0 645 271 134 4 chr13 2790945 2791172 -99081997 + MIR SINE MIR 6 256 -6 376 269 32 0 chr13 2791671 2791764 -99081405 - MER94 DNA DNA -15 119 24 198 274 0 95 chr13 2792020 2792104 -99081065 + L2 LINE L2 3197 3272 0 398 234 183 77 chr13 2792388 2792519 -99080650 - MIR SINE MIR 0 262 146 2450 64 0 0 chr13 2792519 2792817 -99080352 + AluY SINE Alu 1 298 -13 398 234 183 77 chr13 2792817 2792920 -99080249 - MIR SINE MIR -116 146 3 284 228 354 6 chr13 2793081 2793239 -99079930 + L1MC4 LINE L1 7466 7678 -364 386 261 54 8 chr13 2793425 2793555 -99079614 + L1MC4 LINE L1 7817 7952 -90 284 211 0 0 chr13 2793585 2793637 -99079532 + FAM SINE Alu 116 167 -12 2204 118 0 3 chr13 2793663 2793968 -99079201 + AluSg SINE Alu 1 304 -6 345 100 0 0 chr13 2793973 2794023 -99079146 + (TA)n Simple_repeat Simple_repeat 2 51 0 732 165 0 31 chr13 2794123 2794250 -99078919 + FLAM_C SINE Alu 1 123 -10 2210 93 6 19 chr13 2794260 2794392 -99078777 + AluSc SINE Alu 1 133 -176 2341 97 0 0 chr13 2794392 2794701 -99078468 + AluY SINE Alu 1 309 -2 2210 93 6 19 chr13 2794701 2794879 -99078290 + AluSc SINE Alu 133 307 -2 354 255 121 13 chr13 2795147 2795296 -99077873 - MIR SINE MIR -21 241 77 21 57 0 0 chr13 2795397 2795432 -99077737 + AT_rich Low_complexity Low_complexity 1 35 0 2167 144 0 0 chr13 2796363 2796669 -99076500 - AluSx SINE Alu -6 306 1 2226 115 0 10 chr13 2796844 2797156 -99076013 - AluSc SINE Alu 0 309 1 785 154 22 7 chr13 2797555 2797691 -99075478 - FLAM_C SINE Alu -1 142 5 29 0 0 0 chr13 2798210 2798239 -99074930 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 2799210 2799239 -99073930 + AT_rich Low_complexity Low_complexity 1 29 0 239 374 40 0 chr13 2799542 2799641 -99073528 - MIR3 SINE MIR -34 174 72 2309 101 7 0 chr13 2800209 2800506 -99072663 - AluSp SINE Alu -14 299 1 202 219 27 27 chr13 2801324 2801397 -99071772 + A-rich Low_complexity Low_complexity 5 77 0 240 196 61 20 chr13 2802549 2802645 -99070524 - MIR SINE MIR -72 136 81 21 0 0 0 chr13 2803632 2803653 -99069516 + AT_rich Low_complexity Low_complexity 1 21 0 1786 125 59 7 chr13 2805171 2805459 -99067710 + AluSx SINE Alu 1 303 -9 1957 127 0 20 chr13 2805498 2805797 -99067372 + AluSx SINE Alu 5 297 -15 1845 127 76 0 chr13 2805817 2806092 -99067077 + AluSx SINE Alu 1 296 -16 1841 166 17 0 chr13 2806155 2806456 -99066713 - AluJb SINE Alu -6 306 1 626 201 174 0 chr13 2806517 2806666 -99066503 - AluSg/x SINE Alu 0 310 136 1093 177 5 0 chr13 2806668 2806854 -99066315 - AluJo SINE Alu -12 300 114 240 162 0 0 chr13 2806858 2806895 -99066274 + Alu SINE Alu 6 42 -91 218 288 72 78 chr13 2807382 2807535 -99065634 - MER5A DNA MER1_type 0 189 38 218 245 41 0 chr13 2807847 2807896 -99065273 - MIR SINE MIR 0 262 212 879 200 35 0 chr13 2807960 2808130 -99065039 - MIR SINE MIR -70 192 17 370 292 102 0 chr13 2808728 2808865 -99064304 - L2 LINE L2 -8 3305 3155 1149 130 12 0 chr13 2808988 2809150 -99064019 - AluSg/x SINE Alu -19 293 130 645 283 88 4 chr13 2809221 2809447 -99063722 - MIR SINE MIR -2 260 16 1570 189 67 54 chr13 2809736 2810060 -99063109 + MSTD LTR MaLR 1 332 -64 2264 86 3 3 chr13 2810060 2810352 -99062817 + AluSx SINE Alu 1 292 -20 1570 189 67 54 chr13 2810352 2810418 -99062751 + MSTD LTR MaLR 332 396 0 199 308 0 31 chr13 2811062 2811127 -99062042 + MIR SINE MIR 30 92 -116 284 291 179 35 chr13 2811188 2811316 -99061853 + L1ME3 LINE L1 4561 4669 -1477 2064 119 6 44 chr13 2811316 2811636 -99061533 + AluSq SINE Alu 1 308 -5 284 291 179 35 chr13 2811636 2811992 -99061177 + L1ME3 LINE L1 4669 5115 -1031 2126 106 228 6 chr13 2812093 2812453 -99060716 - LTR12 LTR ERV1 -234 480 41 239 143 0 0 chr13 2812453 2812495 -99060674 - LTR30 LTR ERV1 -680 42 1 429 257 99 82 chr13 2812537 2812582 -99060587 + L1ME3 LINE L1 5258 5301 -863 757 289 65 59 chr13 2812582 2813088 -99060081 + MLT1J LTR MaLR 1 509 -2 429 257 99 82 chr13 2813088 2813276 -99059893 + L1ME3 LINE L1 5301 5484 -680 1400 177 130 0 chr13 2813276 2813530 -99059639 + AluSx SINE Alu 5 291 -21 429 257 99 82 chr13 2813530 2813962 -99059207 + L1ME3 LINE L1 5484 5939 -225 395 303 113 50 chr13 2814259 2814622 -99058547 + L1MEd LINE L1 88 473 -5732 255 227 163 23 chr13 2814871 2815043 -99058126 + L1MEd LINE L1 727 922 -5283 3327 165 88 63 chr13 2815064 2815503 -99057666 + L1MB3 LINE L1 5143 5569 -614 2443 73 0 3 chr13 2815503 2815806 -99057363 + AluSg SINE Alu 4 305 -5 3327 165 88 63 chr13 2815806 2816027 -99057142 + L1MB3 LINE L1 5569 5783 -400 1903 156 0 3 chr13 2816027 2816322 -99056847 + AluJb SINE Alu 5 298 -14 3327 165 88 63 chr13 2816322 2816595 -99056574 + L1MB3 LINE L1 5783 6099 -84 2359 88 0 7 chr13 2816623 2816918 -99056251 - AluY SINE Alu -18 293 1 334 229 73 37 chr13 2817001 2817110 -99056059 + L1ME3 LINE L1 6047 6159 -3 2245 131 0 6 chr13 2817174 2817488 -99055681 + AluSx SINE Alu 1 312 0 1953 157 130 3 chr13 2817559 2817935 -99055234 - MSTB LTR MaLR -2 424 1 2133 119 7 0 chr13 2817954 2818249 -99054920 + AluSq SINE Alu 1 297 -16 239 276 0 26 chr13 2818276 2818352 -99054817 + LTR33 LTR ERVL 41 114 -407 367 195 87 60 chr13 2818445 2818594 -99054575 + LTR33 LTR ERVL 369 521 0 580 286 83 25 chr13 2818662 2819061 -99054108 + L1MEd LINE L1 1317 1738 -4658 2324 91 7 0 chr13 2819116 2819414 -99053755 - AluSp SINE Alu -13 300 1 1385 179 31 45 chr13 2819441 2819732 -99053437 + AluJb SINE Alu 1 287 -25 360 119 0 0 chr13 2819734 2819793 -99053376 + (CAATC)n Simple_repeat Simple_repeat 2 60 0 1570 175 4 15 chr13 2819793 2820061 -99053108 - AluJb SINE Alu -47 265 1 693 215 0 15 chr13 2820085 2820220 -99052949 + FRAM SINE Alu 34 166 -10 2104 82 50 7 chr13 2820290 2820598 -99052571 - AluSp SINE Alu 0 313 1 351 283 66 11 chr13 2820670 2821005 -99052164 + L1MEd LINE L1 2033 2360 -3855 684 200 0 0 chr13 2821013 2821128 -99052041 + FLAM_C SINE Alu 9 123 -20 305 322 54 20 chr13 2821461 2821610 -99051559 + L1MEd LINE L1 2746 2899 -3316 305 186 186 85 chr13 2821634 2821680 -99051489 + L1MEd LINE L1 3201 3241 -2974 1919 139 10 10 chr13 2821680 2821981 -99051188 + AluSx SINE Alu 1 301 -11 305 186 186 85 chr13 2821981 2822133 -99051036 + L1MEd LINE L1 3241 3419 -2796 2382 86 13 0 chr13 2822141 2822443 -99050726 + AluSp SINE Alu 1 306 -7 332 272 28 67 chr13 2822481 2822661 -99050508 + L1MEd LINE L1 3646 3818 -2397 642 110 42 68 chr13 2822671 2822789 -99050380 + L1MA7 LINE L1 6174 6288 -3 2043 140 6 19 chr13 2822922 2823236 -99049933 + AluSx SINE Alu 1 310 -2 2187 121 0 13 chr13 2823238 2823543 -99049626 + AluSq SINE Alu 1 301 -12 1240 177 55 52 chr13 2823543 2823702 -99049467 + Looper DNA T2_type 341 503 -1055 1615 184 3 33 chr13 2823702 2824006 -99049163 - AluJb SINE Alu -17 295 1 1240 177 55 52 chr13 2824006 2824156 -99049013 + Looper DNA T2_type 503 651 -907 2255 82 7 33 chr13 2824157 2824461 -99048708 - AluSq SINE Alu -16 297 2 645 247 129 0 chr13 2824477 2824647 -99048522 - MER3 DNA MER1_type -1 208 17 2339 203 78 19 chr13 2824663 2824744 -99048425 + Looper DNA T2_type 662 737 -821 1086 200 43 0 chr13 2824744 2824954 -99048215 + MER20 DNA MER1_type 1 219 0 2339 203 78 19 chr13 2824954 2825438 -99047731 + Looper DNA T2_type 737 1260 -298 375 115 77 115 chr13 2825432 2825516 -99047653 + Looper DNA T2_type 1166 1247 -311 * 1957 163 0 3 chr13 2825516 2825822 -99047347 + AluJo SINE Alu 1 305 -7 375 115 77 115 chr13 2825822 2825841 -99047328 + Looper DNA T2_type 1247 1265 -293 1929 155 3 3 chr13 2825866 2826169 -99047000 + AluJb SINE Alu 1 303 -9 2193 105 3 40 chr13 2826175 2826500 -99046669 + AluSp SINE Alu 1 313 0 226 178 44 0 chr13 2826516 2826561 -99046608 + MER3 DNA MER1_type 41 87 -122 * 530 250 16 0 chr13 2826553 2826677 -99046492 - MER3 DNA MER1_type -82 127 2 417 235 8 53 chr13 2826777 2826909 -99046260 - MIR SINE MIR 0 262 137 2186 111 3 3 chr13 2826930 2827228 -99045941 + AluSx SINE Alu 1 298 -14 414 221 93 0 chr13 2827228 2827314 -99045855 - FLAM_A SINE Alu -20 113 20 404 111 79 0 chr13 2827365 2827458 -99045711 - AluSp/q SINE Alu 0 317 220 1980 104 0 4 chr13 2827487 2827738 -99045431 - AluSx SINE Alu -62 250 1 247 323 81 0 chr13 2827857 2827981 -99045188 - L2 LINE L2 -5 3267 3134 1183 157 63 22 chr13 2828030 2828253 -99044916 + AluJo SINE Alu 79 310 -2 287 296 139 12 chr13 2828300 2828472 -99044697 - L2 LINE L2 -213 3059 2866 713 150 8 24 chr13 2828541 2828668 -99044501 + MER45R DNA AcHobo 1457 1581 0 1971 93 12 99 chr13 2828808 2829140 -99044029 + AluSg SINE Alu 1 303 -7 2340 89 10 0 chr13 2829190 2829492 -99043677 - AluSp SINE Alu -8 305 1 2352 88 0 10 chr13 2829909 2830214 -99042955 + AluSq SINE Alu 1 302 -11 2144 136 0 0 chr13 2830246 2830547 -99042622 + AluSx SINE Alu 1 301 -11 2208 128 0 0 chr13 2830700 2830997 -99042172 + AluSx SINE Alu 1 297 -15 390 258 132 33 chr13 2831178 2831391 -99041778 - L1ME LINE L1 -297 5824 5591 340 320 98 40 chr13 2831640 2832112 -99041057 - L1ME LINE L1 -1539 4607 4109 342 230 30 22 chr13 2832185 2832320 -99040849 - L1ME LINE L1 -2146 4000 3865 237 323 0 50 chr13 2832745 2832844 -99040325 + L2 LINE L2 2981 3074 -198 209 284 0 118 chr13 2833037 2833092 -99040077 + MIR SINE MIR 76 110 -152 1947 121 25 18 chr13 2833092 2833402 -99039767 - AluSx SINE Alu 0 312 1 209 284 0 118 chr13 2833402 2833472 -99039697 + MIR SINE MIR 110 187 -75 2095 126 17 3 chr13 2833631 2833932 -99039237 + AluSq SINE Alu 1 305 -8 295 262 0 0 chr13 2834181 2834242 -99038927 - MER2 DNA MER2_type -212 133 73 478 140 68 33 chr13 2834245 2834453 -99038716 + AluJo SINE Alu 3 290 -22 323 221 0 93 chr13 2834467 2834553 -99038616 - MER2 DNA MER2_type -267 78 1 410 212 17 51 chr13 2834730 2834848 -99038321 + MIR SINE MIR 35 148 -60 589 233 69 80 chr13 2835308 2835455 -99037714 + MIR SINE MIR 2 146 -116 2309 83 10 0 chr13 2835455 2835744 -99037425 + AluSg SINE Alu 2 293 -17 589 233 69 80 chr13 2835744 2835858 -99037311 + MIR SINE MIR 146 260 -2 2110 130 3 0 chr13 2835962 2836261 -99036908 - AluSx SINE Alu -12 300 1 246 277 18 62 chr13 2836355 2836473 -99036696 + MIR SINE MIR 2 110 -104 27 62 0 0 chr13 2838278 2838326 -99034843 + GC_rich Low_complexity Low_complexity 1 48 0 2491 77 0 0 chr13 2838695 2839006 -99034163 - AluSx SINE Alu -1 311 1 1622 156 33 10 chr13 2839230 2839531 -99033638 + AluJb SINE Alu 1 308 -4 193 313 24 24 chr13 2839559 2839642 -99033527 - L3 LINE CR1 -22 1555 1473 180 247 56 79 chr13 2839707 2839796 -99033373 - L3 LINE CR1 -211 1366 1280 462 18 0 0 chr13 2839894 2839949 -99033220 + (TG)n Simple_repeat Simple_repeat 2 56 0 2110 115 4 0 chr13 2839950 2840228 -99032941 - AluSx SINE Alu -33 279 1 271 224 0 0 chr13 2840413 2840462 -99032707 + L2 LINE L2 3210 3258 -14 2216 94 3 39 chr13 2840680 2840988 -99032181 + AluSp SINE Alu 1 297 -16 2133 122 26 0 chr13 2840988 2841291 -99031878 + AluSx SINE Alu 1 311 -1 1888 150 0 23 chr13 2841296 2841602 -99031567 + AluJo SINE Alu 5 303 -9 2205 122 7 0 chr13 2841604 2841900 -99031269 + AluSx SINE Alu 1 298 -14 2236 96 36 0 chr13 2841900 2842201 -99030968 + AluSx SINE Alu 1 312 0 180 303 30 45 chr13 2842344 2842410 -99030759 - L3 LINE CR1 -5 1572 1508 1713 162 9 62 chr13 2842499 2842671 -99030498 - AluSx SINE Alu -8 304 124 186 43 0 0 chr13 2842671 2842694 -99030475 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2091 92 3 11 chr13 2842694 2842978 -99030191 - AluSc SINE Alu -27 282 1 2372 85 0 0 chr13 2842987 2843300 -99029869 - AluSq SINE Alu 0 313 1 1713 162 9 62 chr13 2843300 2843436 -99029733 - AluSx SINE Alu -195 117 1 217 224 64 66 chr13 2843928 2844034 -99029135 - MIR SINE MIR -5 203 85 193 336 44 44 chr13 2844058 2844195 -99028974 + MIR SINE MIR 14 150 -112 998 270 145 58 chr13 2844468 2845135 -99028034 + MER21B LTR ERV1 6 730 -133 442 223 9 9 chr13 2845281 2845393 -99027776 - MIR SINE MIR -56 206 95 2448 79 3 0 chr13 2845415 2845719 -99027450 - AluY SINE Alu -4 307 3 396 226 28 0 chr13 2845731 2845837 -99027332 + L1 LINE L1 2768 2876 -3270 264 172 0 0 chr13 2845842 2845900 -99027269 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 2845915 2846222 -99026947 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 2846264 2846407 -99026762 + L1 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 2846414 2846842 -99026327 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 2846856 2847101 -99026068 + L1 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 2847111 2847398 -99025771 + AluSg SINE Alu 5 306 -4 2019 164 0 0 chr13 2847409 2847720 -99025449 + AluJb SINE Alu 2 312 0 2361 81 0 3 chr13 2847720 2848017 -99025152 + AluY SINE Alu 1 296 -15 29 0 0 0 chr13 2848017 2848046 -99025123 + AT_rich Low_complexity Low_complexity 1 29 0 460 102 0 153 chr13 2848046 2848144 -99025025 + AluSq SINE Alu 121 203 -110 993 74 0 0 chr13 2848179 2848301 -99024868 + AluSg/x SINE Alu 181 302 -8 583 214 15 30 chr13 2848336 2848467 -99024702 + FLAM_A SINE Alu 1 129 -4 609 154 164 34 chr13 2848469 2848513 -99024656 + Charlie1 DNA MER1_type 2478 2515 -246 2260 103 0 13 chr13 2848513 2848823 -99024346 - AluSq SINE Alu -7 306 1 609 154 164 34 chr13 2848823 2848986 -99024183 + Charlie1 DNA MER1_type 2515 2712 -49 2466 86 0 0 chr13 2849097 2849398 -99023771 - AluSx SINE Alu -11 301 1 2020 130 13 0 chr13 2849554 2849854 -99023315 + AluSq SINE Alu 1 304 -9 803 111 19 0 chr13 2850147 2850255 -99022914 + AluSq/x SINE Alu 1 110 -203 2208 110 0 0 chr13 2850280 2850605 -99022564 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 2850763 2850790 -99022379 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1078 139 48 0 chr13 2851882 2852047 -99021122 - AluSx SINE Alu -11 299 127 1016 108 0 0 chr13 2852112 2852242 -99020927 - AluSx SINE Alu -183 130 1 254 176 39 0 chr13 2852633 2852684 -99020485 + Charlie1 DNA MER1_type 2709 2761 0 2041 146 0 0 chr13 2853064 2853358 -99019811 + AluJb SINE Alu 9 302 -10 2486 78 7 0 chr13 2853519 2853828 -99019341 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 2854031 2854059 -99019110 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 401 100 0 17 chr13 2854776 2854836 -99018333 - AluSc SINE Alu -178 131 73 264 172 0 0 chr13 2855021 2855079 -99018090 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 2855093 2855400 -99017769 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 2855442 2855585 -99017584 + L1MB2 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 2855592 2856020 -99017149 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 2856034 2856279 -99016890 + L1MB2 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 2856289 2856576 -99016593 + AluSg SINE Alu 5 306 -4 1909 172 0 0 chr13 2856587 2856884 -99016285 + AluJb SINE Alu 2 298 -14 2274 105 0 3 chr13 2856884 2857188 -99015981 + AluY SINE Alu 1 303 -8 2369 106 0 0 chr13 2857193 2857505 -99015664 + AluSx SINE Alu 1 312 0 7099 185 54 44 chr13 2857532 2858149 -99015020 + L1MB2 LINE L1 3562 4172 -2010 2388 99 0 0 chr13 2858149 2858443 -99014726 - AluSq SINE Alu -19 294 1 7099 185 54 44 chr13 2858443 2858648 -99014521 + L1MB2 LINE L1 4172 4374 -1808 2492 33 40 10 chr13 2858648 2858949 -99014220 + AluY SINE Alu 1 310 -1 7099 185 54 44 chr13 2858949 2859362 -99013807 + L1MB2 LINE L1 4374 4782 -1400 2424 47 7 13 chr13 2859362 2859663 -99013506 - AluY SINE Alu -11 300 2 7099 185 54 44 chr13 2859663 2860137 -99013032 + L1MB2 LINE L1 4782 5250 -932 2026 126 0 46 chr13 2860137 2860439 -99012730 + AluJb SINE Alu 1 288 -24 1441 153 117 36 chr13 2860449 2860723 -99012446 + AluSg SINE Alu 1 296 -14 7099 185 54 44 chr13 2860723 2860837 -99012332 + L1MB2 LINE L1 5258 5437 -745 279 241 0 0 chr13 2860838 2860896 -99012273 + AluYa5 SINE Alu 135 192 -109 27 0 0 0 chr13 2860911 2860938 -99012231 + AT_rich Low_complexity Low_complexity 1 27 0 3226 168 66 45 chr13 2860939 2861011 -99012158 + L1MB2 LINE L1 5429 5498 -673 2141 118 0 32 chr13 2861011 2861325 -99011844 + AluSx SINE Alu 1 304 -8 3226 168 66 45 chr13 2861325 2861836 -99011333 + L1MB2 LINE L1 5498 6031 -140 2284 96 0 19 chr13 2861836 2862149 -99011020 - AluSg SINE Alu -3 307 1 3226 168 66 45 chr13 2862149 2862249 -99010920 + L1MB2 LINE L1 6031 6127 -44 2796 167 44 175 chr13 2862401 2862471 -99010698 + L1MB2 LINE L1 5258 5336 -835 2013 126 0 46 chr13 2862471 2862773 -99010396 + AluJb SINE Alu 1 288 -24 1458 150 117 36 chr13 2862783 2863057 -99010112 + AluSg SINE Alu 1 296 -14 2796 167 44 175 chr13 2863057 2863172 -99009997 + L1MB2 LINE L1 5346 5474 -697 279 241 0 0 chr13 2863172 2863230 -99009939 + AluYa5 SINE Alu 135 192 -109 2796 167 44 175 chr13 2863230 2863345 -99009824 + L1MB2 LINE L1 5474 5602 -569 2141 118 0 32 chr13 2863345 2863659 -99009510 + AluSx SINE Alu 1 304 -8 2796 167 44 175 chr13 2863659 2864170 -99008999 + L1MB2 LINE L1 5602 6037 -134 2155 115 6 19 chr13 2864170 2864483 -99008686 - AluSx SINE Alu -3 309 1 1232 190 28 120 chr13 2865279 2865625 -99007544 - Charlie1 DNA MER1_type 0 2761 2466 2165 115 0 7 chr13 2865625 2865929 -99007240 - AluSx SINE Alu -10 302 1 1232 190 28 120 chr13 2865929 2866039 -99007130 - Charlie1 DNA MER1_type -295 2466 2347 244 167 0 0 chr13 2866051 2866087 -99007082 - Charlie1 DNA MER1_type -2725 36 1 1893 111 0 25 chr13 2866452 2866732 -99006437 + AluSx SINE Alu 40 311 -1 2067 99 0 3 chr13 2866804 2867097 -99006072 + AluSg1 SINE Alu 1 292 -17 194 331 137 32 chr13 2867345 2867469 -99005700 + MIR3 SINE MIR 33 169 -39 252 73 18 109 chr13 2867550 2867605 -99005564 - LTR67 LTR ERVL -4 553 504 463 287 68 94 chr13 2867764 2868029 -99005140 + L2 LINE L2 3010 3267 -5 205 245 0 0 chr13 2868056 2868105 -99005064 + L2 LINE L2 3256 3304 -9 2185 77 0 7 chr13 2868168 2868466 -99004703 + AluY SINE Alu 1 296 -15 2223 183 25 27 chr13 2869063 2869407 -99003762 - L1MB3 LINE L1 -2 6181 5838 1894 121 37 0 chr13 2869407 2869705 -99003464 - AluSx SINE Alu -2 310 2 2034 118 0 29 chr13 2869712 2870027 -99003142 - AluSg SINE Alu -4 306 1 2223 183 25 27 chr13 2870027 2870161 -99003008 - L1MB3 LINE L1 -351 5832 5696 222 326 31 0 chr13 2870217 2870315 -99002854 + MIR SINE MIR 106 206 -56 306 366 6 0 chr13 2871087 2871251 -99001918 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2193 109 0 10 chr13 2871548 2871861 -99001308 - AluY SINE Alu 0 311 2 1878 105 7 56 chr13 2872255 2872560 -99000609 - AluSq SINE Alu -23 290 1 275 0 0 28 chr13 2872622 2872658 -99000511 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2305 49 3 3 chr13 2872669 2872953 -99000216 - AluY SINE Alu -27 284 1 1074 68 0 0 chr13 2872954 2873087 -99000082 - AluYb8 SINE Alu -185 133 1 2477 115 37 91 chr13 2873087 2873573 -98999596 - L1MB2 LINE L1 -41 6130 5671 322 257 57 57 chr13 2873581 2873721 -98999448 - MIR3 SINE MIR 0 208 69 2198 81 0 14 chr13 2873744 2874039 -98999130 - AluSg SINE Alu -19 291 1 511 295 13 13 chr13 2874039 2874195 -98998974 - MIR SINE MIR -4 258 103 382 79 32 0 chr13 2874197 2874260 -98998909 + (TA)n Simple_repeat Simple_repeat 1 65 0 1918 129 4 0 chr13 2874262 2874541 -98998628 - AluSg SINE Alu -30 280 1 353 318 85 0 chr13 2874617 2874746 -98998423 - L2 LINE L2 0 3272 3133 252 273 117 23 chr13 2875083 2875140 -98998029 - MIR SINE MIR -44 218 168 357 24 0 0 chr13 2875140 2875182 -98997987 + (TC)n Simple_repeat Simple_repeat 1 42 0 1241 158 17 70 chr13 2875183 2875481 -98997688 - AluJo SINE Alu -30 282 1 252 273 117 23 chr13 2875481 2875549 -98997620 - MIR SINE MIR -93 169 79 2118 102 0 20 chr13 2876595 2876898 -98996271 - AluSx SINE Alu -15 297 1 643 236 85 43 chr13 2877142 2877280 -98995889 + L1M4 LINE L1 4995 5126 -1020 2257 85 7 3 chr13 2877280 2877587 -98995582 + AluSc SINE Alu 1 308 -1 643 236 85 43 chr13 2877587 2877706 -98995463 + L1M4 LINE L1 5126 5263 -883 396 254 0 87 chr13 2877711 2877797 -98995372 - HAL1 LINE L1 -180 2327 2264 1452 166 0 67 chr13 2877797 2878110 -98995059 - AluJb SINE Alu -20 292 1 396 254 0 87 chr13 2878110 2878208 -98994961 - HAL1 LINE L1 -243 2264 2159 266 229 110 37 chr13 2878283 2878392 -98994777 - HAL1 LINE L1 -662 1845 1729 1935 102 4 0 chr13 2878413 2878678 -98994491 - AluSp SINE Alu -1 312 47 598 111 56 0 chr13 2878681 2878771 -98994398 + AluSg/x SINE Alu 201 295 -14 984 106 8 0 chr13 2879020 2879152 -98994017 + FLAM_C SINE Alu 1 133 0 751 217 166 5 chr13 2879226 2879443 -98993726 - HAL1 LINE L1 -770 1737 1486 770 104 0 9 chr13 2879443 2879558 -98993611 + AluSg/x SINE Alu 197 310 0 1311 142 13 13 chr13 2879560 2879872 -98993297 + L1MB8 LINE L1 5190 5499 -675 1099 101 0 0 chr13 2879875 2880012 -98993157 + AluSq/x SINE Alu 1 140 -172 2119 126 0 3 chr13 2880012 2880322 -98992847 + AluSx SINE Alu 1 309 -3 1099 101 0 0 chr13 2880322 2880333 -98992836 + AluSq/x SINE Alu 139 149 -163 2424 128 63 101 chr13 2880333 2880762 -98992407 + L1MB8 LINE L1 5505 5912 -266 2060 120 0 0 chr13 2880762 2881062 -98992107 + AluSx SINE Alu 1 300 -12 2424 128 63 101 chr13 2881062 2881156 -98992013 + L1MB8 LINE L1 5912 6008 -170 960 110 0 0 chr13 2881173 2881309 -98991860 - AluSg/x SINE Alu -13 297 162 417 107 0 0 chr13 2881413 2881469 -98991700 - AluSq/x SINE Alu -179 133 78 1262 155 5 9 chr13 2881469 2881682 -98991487 - AluSx SINE Alu -100 212 1 1302 151 14 18 chr13 2881685 2881957 -98991212 - L1M4 LINE L1 -675 5499 5235 2015 105 16 7 chr13 2881984 2882290 -98990879 + AluY SINE Alu 1 309 -2 573 170 64 7 chr13 2882319 2882460 -98990709 + L1MB8 LINE L1 6025 6173 -5 1091 126 6 6 chr13 2882463 2882474 -98990695 + AluSg/x SINE Alu 121 131 -179 2218 93 3 3 chr13 2882474 2882776 -98990393 + AluSq SINE Alu 1 302 -11 1091 126 6 6 chr13 2882776 2882939 -98990230 + AluSg/x SINE Alu 130 295 -15 1374 253 107 65 chr13 2882941 2883230 -98989939 + HAL1 LINE L1 828 1103 -1404 2397 61 3 6 chr13 2883230 2883542 -98989627 + AluY SINE Alu 1 311 0 1374 253 107 65 chr13 2883542 2884057 -98989112 + HAL1 LINE L1 1103 1666 -841 329 278 11 0 chr13 2884114 2884204 -98988965 + HAL1 LINE L1 1802 1892 -615 260 33 0 0 chr13 2884384 2884414 -98988755 - LTR6A LTR ERV1 -462 102 73 292 243 149 68 chr13 2885342 2885373 -98987796 + HAL1 LINE L1 2012 2039 -468 1968 110 3 17 chr13 2885373 2885674 -98987495 + AluSp SINE Alu 1 297 -16 292 243 149 68 chr13 2885674 2885875 -98987294 + HAL1 LINE L1 2039 2222 -285 2496 55 0 3 chr13 2885875 2886185 -98986984 + AluY SINE Alu 1 309 -2 292 243 149 68 chr13 2886185 2886346 -98986823 + HAL1 LINE L1 2222 2438 -69 32 26 0 0 chr13 2886373 2886412 -98986757 + AT_rich Low_complexity Low_complexity 1 39 0 188 270 162 40 chr13 2886626 2886645 -98986524 - MIR SINE MIR -107 101 86 1269 139 16 84 chr13 2886645 2886858 -98986311 + MER46A DNA MER2_type 3 198 -2533 1834 133 19 16 chr13 2886858 2887167 -98986002 - AluSx SINE Alu -2 310 1 1269 139 16 84 chr13 2887167 2887204 -98985965 + MER46A DNA MER2_type 198 236 0 188 270 162 40 chr13 2887204 2887258 -98985911 - MIR SINE MIR -122 86 19 488 252 44 7 chr13 2887463 2887598 -98985571 + MER117 DNA MER1_type 1 140 -57 1290 196 113 48 chr13 2887674 2888010 -98985159 + MLT1A1 LTR MaLR 8 365 0 576 153 23 92 chr13 2888310 2888414 -98984755 + MER3 DNA MER1_type 40 150 -12 180 0 0 0 chr13 2888414 2888434 -98984735 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2014 104 0 10 chr13 2888434 2888722 -98984447 - AluSg SINE Alu -25 285 1 1900 134 30 0 chr13 2888722 2889020 -98984149 - AluSx SINE Alu -5 307 1 576 153 23 92 chr13 2889020 2889044 -98984125 + MER3 DNA MER1_type 147 161 -48 2781 239 158 42 chr13 2889074 2890191 -98982978 + L1MDa LINE L1 19 1320 -5220 780 102 0 70 chr13 2890192 2890320 -98982849 - FRAM SINE Alu -4 172 54 1361 191 32 27 chr13 2890392 2890700 -98982469 + LTR38 LTR ERV1 127 451 -159 335 262 39 0 chr13 2890715 2890818 -98982351 + MER87 LTR ERV1 395 501 -40 1871 142 23 3 chr13 2890818 2891120 -98982049 - AluSx SINE Alu -4 308 1 1464 146 18 18 chr13 2891263 2891537 -98981632 + AluSp SINE Alu 22 295 -18 3187 178 52 50 chr13 2891537 2892408 -98980761 + L1MDa LINE L1 1302 2177 -4363 393 227 52 0 chr13 2892477 2892574 -98980595 + U13 snRNA snRNA 1 102 -2 1283 151 19 31 chr13 2892772 2892857 -98980312 + AluJo SINE Alu 57 141 -171 288 0 0 0 chr13 2892857 2892889 -98980280 + (TA)n Simple_repeat Simple_repeat 2 33 0 1283 151 19 31 chr13 2892889 2893061 -98980108 + AluJo SINE Alu 141 311 -1 2082 100 0 13 chr13 2893120 2893419 -98979750 - AluSq SINE Alu -18 295 1 296 163 213 31 chr13 2893422 2893582 -98979587 + Charlie1 DNA MER1_type 2524 2712 -49 2335 86 0 0 chr13 2893693 2893994 -98979175 - AluSx SINE Alu -11 301 1 1905 130 13 0 chr13 2894150 2894450 -98978719 + AluSq SINE Alu 1 304 -9 779 129 0 17 chr13 2894740 2894856 -98978313 + AluSq/x SINE Alu 2 115 -198 2083 110 0 0 chr13 2894876 2895201 -98977968 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 2895359 2895386 -98977783 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1017 139 48 0 chr13 2896478 2896643 -98976526 - AluSx SINE Alu -11 299 127 958 113 0 0 chr13 2896705 2896838 -98976331 - AluSx SINE Alu -180 133 1 253 176 39 0 chr13 2897229 2897280 -98975889 + Charlie1 DNA MER1_type 2709 2761 0 1927 146 0 0 chr13 2897660 2897954 -98975215 + AluJb SINE Alu 9 302 -10 2353 78 7 0 chr13 2898115 2898424 -98974745 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 2898627 2898655 -98974514 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 265 100 0 0 chr13 2899372 2899412 -98973757 - AluSq/x SINE Alu -169 133 94 277 209 11 128 chr13 2899518 2899588 -98973581 - LTR9 LTR ERV1 -174 438 388 2198 87 0 0 chr13 2899588 2899875 -98973294 + AluSg SINE Alu 1 287 -23 277 209 11 128 chr13 2899875 2899913 -98973256 - LTR9 LTR ERV1 -224 388 347 1727 155 11 90 chr13 2899950 2900317 -98972852 - LTR9 LTR ERV1 -274 338 1 1374 185 62 14 chr13 2900440 2900716 -98972453 + AluJo SINE Alu 1 289 -23 2061 80 42 11 chr13 2900725 2901012 -98972157 + AluSp SINE Alu 1 296 -17 1536 139 25 86 chr13 2901034 2901220 -98971949 - AluJb SINE Alu -8 304 145 1889 141 0 7 chr13 2901220 2901518 -98971651 - AluSc SINE Alu -13 296 1 1536 139 25 86 chr13 2901518 2901655 -98971514 - AluJb SINE Alu -167 145 1 259 125 152 18 chr13 2901982 2902094 -98971075 + (TTTAA)n Simple_repeat Simple_repeat 1 127 0 1865 146 0 14 chr13 2902266 2902553 -98970616 - AluJo SINE Alu -29 283 1 2098 102 0 0 chr13 2902606 2902919 -98970250 - AluSx SINE Alu 0 313 1 2012 131 0 0 chr13 2902923 2903213 -98969956 - AluSx SINE Alu -18 294 5 307 221 0 29 chr13 2903381 2903449 -98969720 + L1M LINE L1 5353 5418 -703 4861 74 19 50 chr13 2903489 2903897 -98969272 - L1PA11 LINE L1 -2 6172 5794 2191 101 3 19 chr13 2903897 2904215 -98968954 - AluSp SINE Alu 0 313 1 4861 74 19 50 chr13 2904215 2904508 -98968661 - L1PA11 LINE L1 -380 5794 5493 2025 137 0 13 chr13 2904508 2904823 -98968346 - AluSx SINE Alu -1 311 1 2159 123 0 0 chr13 2904824 2905133 -98968036 - AluSq SINE Alu -4 309 1 2002 104 14 0 chr13 2905136 2905435 -98967734 - AluSx SINE Alu 0 303 1 990 169 0 0 chr13 2905453 2905619 -98967550 + FRAM SINE Alu 1 158 -18 2024 145 0 0 chr13 2905647 2905958 -98967211 + AluSx SINE Alu 1 311 -1 627 262 79 30 chr13 2905998 2906200 -98966969 + MIR SINE MIR 49 260 -2 2169 73 0 0 chr13 2906264 2906607 -98966562 - AluY SINE Alu 0 352 10 1931 103 0 0 chr13 2906627 2906899 -98966270 - AluSq SINE Alu -3 310 39 1911 121 0 4 chr13 2906899 2907178 -98965991 - AluSx SINE Alu -33 279 1 21 0 0 0 chr13 2907178 2907199 -98965970 + AT_rich Low_complexity Low_complexity 1 21 0 1964 186 91 59 chr13 2907411 2907573 -98965596 - MER119 DNA MER1_type -3 580 425 2328 71 0 10 chr13 2907573 2907882 -98965287 - AluSg SINE Alu -4 306 1 1964 186 91 59 chr13 2907882 2907926 -98965243 - MER119 DNA MER1_type -158 425 384 2210 95 0 3 chr13 2907926 2908220 -98964949 - AluSc SINE Alu -16 293 1 1964 186 91 59 chr13 2908220 2908231 -98964938 - MER119 DNA MER1_type -199 384 375 2045 105 20 13 chr13 2908231 2908535 -98964634 - AluSx SINE Alu -4 308 3 1964 186 91 59 chr13 2908535 2908873 -98964296 - MER119 DNA MER1_type -208 375 5 708 274 10 5 chr13 2909219 2909416 -98963753 + L1PB4 LINE L1 5956 6153 -3 1467 188 0 7 chr13 2909508 2909780 -98963389 + AluJo SINE Alu 4 273 -39 2293 84 0 3 chr13 2909783 2910091 -98963078 + AluY SINE Alu 1 307 -4 912 200 0 0 chr13 2910091 2910266 -98962903 + AluJo/FRAM SINE Alu 135 309 -3 2046 104 0 27 chr13 2910266 2910563 -98962606 + AluSx SINE Alu 1 289 -23 239 189 57 0 chr13 2910597 2910650 -98962519 - MER69 DNA AcHobo -1170 56 1 338 244 28 82 chr13 2911252 2911571 -98961598 + L1ME4a LINE L1 5565 5866 -255 2205 65 41 3 chr13 2911606 2911896 -98961273 - AluY SINE Alu -8 303 3 30 0 0 0 chr13 2911898 2911928 -98961241 + AT_rich Low_complexity Low_complexity 1 30 0 1928 136 0 16 chr13 2911928 2912237 -98960932 - AluJb SINE Alu -3 309 6 350 252 59 25 chr13 2912271 2912390 -98960779 + MIR SINE MIR 51 173 -89 308 200 25 12 chr13 2912383 2912463 -98960706 + MIR SINE MIR 48 128 -134 * 2007 99 20 17 chr13 2912756 2913049 -98960120 + AluSx SINE Alu 1 294 -18 234 203 85 17 chr13 2914383 2914442 -98958727 - MIR3 SINE MIR -8 200 138 309 90 0 9 chr13 2914531 2914741 -98958428 + AluSc SINE Alu 1 293 -6 433 284 66 51 chr13 2914743 2915137 -98958032 - L1ME4a LINE L1 -73 6048 5649 2086 105 0 3 chr13 2915158 2915480 -98957689 + AluSx SINE Alu 1 321 0 2024 117 0 3 chr13 2915566 2915857 -98957312 - AluSg1 SINE Alu -19 290 1 1217 193 28 120 chr13 2916653 2916999 -98956170 - Charlie1 DNA MER1_type 0 2761 2466 2043 115 0 7 chr13 2916999 2917303 -98955866 - AluSx SINE Alu -10 302 1 1217 193 28 120 chr13 2917303 2917413 -98955756 - Charlie1 DNA MER1_type -295 2466 2347 244 167 0 0 chr13 2917425 2917461 -98955708 - Charlie1 DNA MER1_type -2725 36 1 1775 128 0 0 chr13 2917826 2918099 -98955070 + AluSx SINE Alu 40 312 0 2067 99 0 3 chr13 2918176 2918469 -98954700 + AluSg1 SINE Alu 1 292 -17 194 331 137 32 chr13 2918717 2918841 -98954328 + MIR3 SINE MIR 33 169 -39 252 73 18 109 chr13 2918922 2918977 -98954192 - LTR67 LTR ERVL -4 553 504 463 287 68 94 chr13 2919136 2919401 -98953768 + L2 LINE L2 3010 3267 -5 205 245 0 0 chr13 2919428 2919477 -98953692 + L2 LINE L2 3256 3304 -9 2185 77 0 7 chr13 2919540 2919838 -98953331 + AluY SINE Alu 1 296 -15 2223 183 25 27 chr13 2920435 2920779 -98952390 - L1MB3 LINE L1 -2 6181 5838 1894 121 37 0 chr13 2920779 2921077 -98952092 - AluSx SINE Alu -2 310 2 2034 118 0 29 chr13 2921084 2921399 -98951770 - AluSg SINE Alu -4 306 1 2223 183 25 27 chr13 2921399 2921533 -98951636 - L1MB3 LINE L1 -351 5832 5696 222 326 31 0 chr13 2921589 2921687 -98951482 + MIR SINE MIR 106 206 -56 306 366 6 0 chr13 2922459 2922623 -98950546 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2193 109 0 10 chr13 2922920 2923233 -98949936 - AluY SINE Alu 0 311 2 1878 105 7 56 chr13 2923627 2923932 -98949237 - AluSq SINE Alu -23 290 1 275 0 0 28 chr13 2923994 2924030 -98949139 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2305 49 3 3 chr13 2924041 2924325 -98948844 - AluY SINE Alu -27 284 1 1074 68 0 0 chr13 2924326 2924459 -98948710 - AluYb8 SINE Alu -185 133 1 2477 115 37 91 chr13 2924459 2924945 -98948224 - L1MB2 LINE L1 -41 6130 5671 322 257 57 57 chr13 2924953 2925093 -98948076 - MIR3 SINE MIR 0 208 69 2198 81 0 14 chr13 2925116 2925411 -98947758 - AluSg SINE Alu -19 291 1 511 295 13 13 chr13 2925411 2925567 -98947602 - MIR SINE MIR -4 258 103 331 73 36 0 chr13 2925571 2925626 -98947543 + (TA)n Simple_repeat Simple_repeat 2 58 0 1931 125 4 0 chr13 2925628 2925907 -98947262 - AluSg SINE Alu -30 280 1 353 318 85 0 chr13 2925983 2926112 -98947057 - L2 LINE L2 0 3272 3133 238 281 117 23 chr13 2926449 2926506 -98946663 - MIR SINE MIR -44 218 168 357 24 0 0 chr13 2926506 2926548 -98946621 + (TC)n Simple_repeat Simple_repeat 1 42 0 1249 158 17 67 chr13 2926549 2926846 -98946323 - AluJo SINE Alu -30 282 1 238 281 117 23 chr13 2926846 2926914 -98946255 - MIR SINE MIR -93 169 79 2150 108 0 19 chr13 2927959 2928274 -98944895 - AluSx SINE Alu -3 309 1 643 236 85 43 chr13 2928518 2928656 -98944513 + L1M4 LINE L1 4995 5126 -1020 2257 85 7 3 chr13 2928656 2928963 -98944206 + AluSc SINE Alu 1 308 -1 643 236 85 43 chr13 2928963 2929082 -98944087 + L1M4 LINE L1 5126 5263 -883 396 254 0 87 chr13 2929087 2929173 -98943996 - HAL1 LINE L1 -180 2327 2264 1440 165 0 73 chr13 2929173 2929488 -98943681 - AluJb SINE Alu -20 292 1 396 254 0 87 chr13 2929488 2929586 -98943583 - HAL1 LINE L1 -243 2264 2159 266 229 110 37 chr13 2929661 2929770 -98943399 - HAL1 LINE L1 -662 1845 1729 1935 102 4 0 chr13 2929791 2930056 -98943113 - AluSp SINE Alu -1 312 47 598 111 56 0 chr13 2930059 2930149 -98943020 + AluSg/x SINE Alu 204 298 -14 984 106 8 0 chr13 2930398 2930530 -98942639 + FLAM_C SINE Alu 1 133 0 751 217 166 5 chr13 2930604 2930821 -98942348 - HAL1 LINE L1 -770 1737 1486 770 104 0 9 chr13 2930821 2930936 -98942233 + AluSg/x SINE Alu 199 312 0 501 146 12 12 chr13 2930961 2931075 -98942094 + L1MC4a LINE L1 5211 5324 -830 2112 113 3 0 chr13 2931260 2931553 -98941616 - AluSx SINE Alu -18 294 1 838 154 0 0 chr13 2931553 2931689 -98941480 - AluJb SINE Alu -176 136 1 1651 188 122 26 chr13 2931691 2931733 -98941436 - LTR40c LTR ERVL -19 446 409 2317 114 21 15 chr13 2931733 2932067 -98941102 - MER1B DNA MER1_type -1 336 1 1651 188 122 26 chr13 2932067 2932401 -98940768 - LTR40c LTR ERVL -56 409 34 994 272 101 8 chr13 2932432 2932807 -98940362 + L1MC4a LINE L1 5569 5978 -1830 2169 113 7 0 chr13 2932930 2933232 -98939937 - AluSx SINE Alu -8 304 1 1831 122 14 10 chr13 2933336 2933624 -98939545 - AluSq SINE Alu -24 289 1 1958 114 0 30 chr13 2933626 2933924 -98939245 - AluSx SINE Alu -23 289 1 189 0 0 0 chr13 2934787 2934808 -98938361 + (TG)n Simple_repeat Simple_repeat 2 22 0 1911 84 0 0 chr13 2936950 2937201 -98935968 - AluSx SINE Alu -6 306 56 1523 184 67 31 chr13 2937598 2938386 -98934783 + L1MB4 LINE L1 5017 5896 -284 1840 134 38 0 chr13 2938386 2938676 -98934493 + AluSq SINE Alu 1 301 -12 1523 184 67 31 chr13 2938676 2938938 -98934231 + L1MB4 LINE L1 5896 6147 -33 288 75 19 0 chr13 2939011 2939064 -98934105 + L1MB4 LINE L1 6127 6180 0 2126 106 0 3 chr13 2939187 2939488 -98933681 - AluSg SINE Alu -10 300 1 1908 156 45 66 chr13 2939847 2940025 -98933144 + Tigger2a DNA MER2_type 1 181 -2527 1965 139 3 3 chr13 2940025 2940335 -98932834 - AluSx SINE Alu -2 310 1 1908 156 45 66 chr13 2940335 2940598 -98932571 + Tigger2a DNA MER2_type 181 433 -1 29 60 0 0 chr13 2940787 2940837 -98932332 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr13 2941277 2941334 -98931835 + AT_rich Low_complexity Low_complexity 1 57 0 281 284 37 12 chr13 2941989 2942070 -98931099 - MIR SINE MIR -149 113 31 397 327 80 34 chr13 2943303 2943566 -98929603 + L3b LINE CR1 1111 1385 -198 2194 99 3 0 chr13 2943580 2943884 -98929285 - AluSp SINE Alu -8 305 1 2351 72 3 3 chr13 2943983 2944289 -98928880 + AluSp SINE Alu 1 306 -7 2008 99 0 11 chr13 2945228 2945510 -98927659 - AluSx SINE Alu -33 279 1 372 174 14 0 chr13 2945771 2945840 -98927329 - L1 LINE L1 -1165 4981 4912 4242 144 61 29 chr13 2945846 2946733 -98926436 + L1MA4A LINE L1 4377 5235 -1068 2099 125 3 0 chr13 2946733 2947037 -98926132 + AluSx SINE Alu 1 305 -7 2216 95 3 0 chr13 2947040 2947336 -98925833 + AluSp SINE Alu 1 297 -16 4242 144 61 29 chr13 2947336 2948187 -98924982 + L1MA4A LINE L1 5236 6302 -1 2043 117 0 13 chr13 2948188 2948504 -98924665 + AluSx SINE Alu 1 312 0 1163 123 0 0 chr13 2948879 2949049 -98924120 - AluSc SINE Alu 0 309 140 7491 63 150 4 chr13 2949050 2950116 -98923053 + MER11B LTR ERVK 1 1222 -14 1158 76 0 0 chr13 2950157 2950301 -98922868 - AluSc SINE Alu -165 144 1 1072 157 46 28 chr13 2950679 2950895 -98922274 - AluJb SINE Alu -26 286 67 1329 118 0 0 chr13 2950895 2951081 -98922088 + AluY SINE Alu 1 186 -125 408 208 13 0 chr13 2951110 2951187 -98921982 - AluJb SINE Alu -233 79 2 23 0 0 0 chr13 2951311 2951334 -98921835 + AT_rich Low_complexity Low_complexity 1 23 0 2754 153 50 21 chr13 2951749 2952284 -98920885 + L1MB4 LINE L1 5629 6179 -1 1487 160 14 34 chr13 2952809 2953103 -98920066 + AluJb SINE Alu 1 288 -24 1787 146 10 3 chr13 2953187 2953489 -98919680 - AluSx SINE Alu -8 304 1 1458 206 0 13 chr13 2953489 2953795 -98919374 - AluJo SINE Alu -8 304 3 1545 76 0 19 chr13 2953830 2954041 -98919128 + AluY SINE Alu 11 217 -94 769 185 14 0 chr13 2954144 2954290 -98918879 + AluSg/x SINE Alu 139 286 -26 585 186 16 16 chr13 2954287 2954411 -98918758 + AluSg/x SINE Alu 183 306 -4 * 1313 151 19 55 chr13 2954415 2954686 -98918483 - AluSx SINE Alu -21 291 31 1992 138 57 131 chr13 2954689 2955204 -98917965 - LTR12 LTR ERV1 -237 2201 55 232 176 39 20 chr13 2955204 2955255 -98917914 - LTR30 LTR ERV1 -670 52 1 * 245 176 147 0 chr13 2955255 2955288 -98917881 - AluS SINE Alu -260 43 1 259 140 20 20 chr13 2955255 2955305 -98917864 - AluSp SINE Alu -134 169 120 555 281 215 36 chr13 2955371 2955954 -98917215 + L2 LINE L2 2624 3313 0 306 114 0 0 chr13 2956210 2956254 -98916915 - AluSx SINE Alu -260 48 5 1676 190 0 3 chr13 2956309 2956604 -98916565 + AluJb SINE Alu 1 294 -18 2026 190 81 46 chr13 2956605 2956755 -98916414 + L1M4 LINE L1 3700 3843 -2303 2063 83 0 113 chr13 2956755 2957092 -98916077 + AluSg SINE Alu 2 300 0 2026 190 81 46 chr13 2957092 2957417 -98915752 + L1M4 LINE L1 3843 4197 -1949 816 120 0 113 chr13 2957417 2957567 -98915602 + FLAM_C SINE Alu 1 133 0 2026 190 81 46 chr13 2957567 2957607 -98915562 + L1M4 LINE L1 4197 4234 -1912 1356 125 15 4 chr13 2957609 2957801 -98915368 + L1M3 LINE L1 5471 5662 -509 1773 178 0 3 chr13 2957801 2958099 -98915070 + AluJo SINE Alu 16 312 0 1356 125 15 4 chr13 2958099 2958121 -98915048 + L1M3 LINE L1 5662 5682 -489 2293 88 0 10 chr13 2958242 2958550 -98914619 + AluSx SINE Alu 1 305 -7 198 322 169 0 chr13 2958553 2958671 -98914498 - L2 LINE L2 -424 2890 2753 310 287 113 0 chr13 2958675 2958790 -98914379 - LTR67 LTR ERVL -2 555 428 701 96 0 0 chr13 2958884 2958978 -98914191 - AluJb SINE Alu -209 103 10 289 310 116 8 chr13 2959394 2959523 -98913646 + MER5B DNA MER1_type 1 143 -35 1941 54 0 8 chr13 2959694 2959935 -98913234 + AluY SINE Alu 62 300 -11 1543 113 16 23 chr13 2959994 2960250 -98912919 + AluSx SINE Alu 47 300 -12 561 107 0 0 chr13 2960809 2960884 -98912285 + FRAM/FAM SINE Alu 1 74 -102 1878 233 139 20 chr13 2960996 2961521 -98911648 + MLT1E2 LTR MaLR 1 598 -28 2009 114 32 38 chr13 2961521 2961703 -98911466 + MER44D DNA MER2_type 1 183 -2308 2338 96 0 3 chr13 2961703 2962016 -98911153 - AluSx SINE Alu 0 312 1 2009 114 32 38 chr13 2962016 2962174 -98910995 + MER44D DNA MER2_type 183 609 0 1878 233 139 20 chr13 2962174 2962207 -98910962 + MLT1E2 LTR MaLR 598 626 0 206 287 66 66 chr13 2962363 2962485 -98910684 + L2 LINE L2 3180 3301 -12 2303 88 0 0 chr13 2962773 2963069 -98910100 + AluSx SINE Alu 1 296 -16 1955 129 7 0 chr13 2963076 2963371 -98909798 + AluSx SINE Alu 1 297 -15 1292 133 68 117 chr13 2963377 2963686 -98909483 + AluJb SINE Alu 1 294 -8 363 287 131 8 chr13 2964613 2964735 -98908434 - L2 LINE L2 0 3272 3136 1125 183 5 0 chr13 2965174 2965387 -98907782 - AluJo SINE Alu -85 227 14 860 175 37 5 chr13 2965427 2965616 -98907553 - AluSp SINE Alu -25 288 94 2218 85 13 10 chr13 2965981 2966288 -98906881 + AluSp SINE Alu 3 310 -3 1638 172 10 3 chr13 2966304 2966601 -98906568 + AluJo SINE Alu 14 312 0 593 236 45 6 chr13 2966767 2966924 -98906245 - MLT1C LTR MaLR -49 418 256 216 204 0 23 chr13 2966950 2966994 -98906175 + CT-rich Low_complexity Low_complexity 4 46 0 872 154 7 0 chr13 2967003 2967146 -98906023 - AluJb SINE Alu -32 280 137 466 144 10 10 chr13 2967717 2967814 -98905355 + GA-rich Low_complexity Low_complexity 3 99 0 312 257 109 0 chr13 2967820 2967921 -98905248 + L2 LINE L2 3144 3255 -17 188 138 0 0 chr13 2968116 2968145 -98905024 + L2 LINE L2 3025 3053 -219 368 311 125 0 chr13 2968187 2968383 -98904786 + MIR SINE MIR 24 249 -13 1205 94 0 6 chr13 2970912 2971072 -98902097 + AluY SINE Alu 1 159 -152 369 389 12 0 chr13 2971261 2971428 -98901741 + G-rich Low_complexity Low_complexity 4 172 0 226 176 0 0 chr13 2971443 2971494 -98901675 + AluSp/q SINE Alu 253 303 0 1926 137 0 11 chr13 2971537 2971867 -98901302 - AluSx SINE Alu 0 327 1 694 146 182 16 chr13 2971875 2972067 -98901102 - L1MC5 LINE L1 -51 7910 7687 * 2367 176 63 37 chr13 2972046 2972263 -98900906 + L1M4 LINE L1 4143 4353 -1793 2293 173 73 7 chr13 2972263 2972690 -98900479 - MSTB2 LTR MaLR -2 455 1 2367 176 63 37 chr13 2972690 2973118 -98900051 + L1M4 LINE L1 4353 4805 -1341 2201 96 0 7 chr13 2973118 2973410 -98899759 + AluSg SINE Alu 1 290 -20 2416 179 39 42 chr13 2973527 2973594 -98899575 + L1M4 LINE L1 4783 4849 -1297 2215 90 10 7 chr13 2973594 2973884 -98899285 - AluSc SINE Alu -16 293 3 2416 179 39 42 chr13 2973884 2974071 -98899098 + L1M4 LINE L1 4849 5035 -1111 3467 79 23 0 chr13 2974071 2974514 -98898655 - MLT2A2 LTR ERVL 0 453 1 2416 179 39 42 chr13 2974514 2974856 -98898313 + L1M4 LINE L1 5035 5378 -768 1702 164 34 7 chr13 2974856 2975218 -98897951 + AluSx SINE Alu 1 370 0 11163 176 45 30 chr13 2975218 2975428 -98897741 + L1MB1 LINE L1 2761 2966 -3202 2307 107 0 10 chr13 2975428 2975736 -98897433 + AluSg SINE Alu 1 305 -5 11163 176 45 30 chr13 2975736 2977046 -98896123 + L1MB1 LINE L1 2966 4346 -1822 2121 119 10 3 chr13 2977046 2977339 -98895830 - AluSx SINE Alu -17 295 1 11163 176 45 30 chr13 2977339 2978484 -98894685 + L1MB1 LINE L1 4346 5472 -696 360 0 0 0 chr13 2978487 2978527 -98894642 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 548 132 0 0 chr13 2978532 2978608 -98894561 - AluJ SINE Alu -25 287 212 * 721 185 7 7 chr13 2978605 2978740 -98894429 - AluJ SINE Alu -164 148 14 3668 149 12 82 chr13 2978743 2979028 -98894141 + L1MB1 LINE L1 5452 5755 -413 709 177 8 0 chr13 2979028 2979158 -98894011 + FLAM_A SINE Alu 1 131 -2 3668 149 12 82 chr13 2979158 2979430 -98893739 + L1MB1 LINE L1 5755 5943 -225 2371 86 0 0 chr13 2979430 2979721 -98893448 + AluSx SINE Alu 5 295 -17 3668 149 12 82 chr13 2979721 2979931 -98893238 + L1MB1 LINE L1 5943 6166 -2 1926 110 26 55 chr13 2980002 2980338 -98892831 - AluSg SINE Alu 0 327 1 2467 82 3 0 chr13 2980339 2980644 -98892525 - AluSx SINE Alu -6 306 1 664 158 0 65 chr13 2980775 2980914 -98892255 - FLAM_C SINE Alu -12 131 2 1719 191 40 47 chr13 2981372 2981519 -98891650 - Charlie4a DNA MER1_type -1453 508 361 2446 98 30 8 chr13 2981519 2981885 -98891284 - THE1C LTR MaLR 0 375 2 1719 191 40 47 chr13 2981885 2982160 -98891009 - Charlie4a DNA MER1_type -1600 361 89 1989 115 33 0 chr13 2982449 2982719 -98890450 + AluSx SINE Alu 1 279 -33 201 39 0 0 chr13 2982721 2982747 -98890422 + (CAA)n Simple_repeat Simple_repeat 1 26 0 624 165 78 0 chr13 2983573 2983688 -98889481 - MER5A DNA MER1_type -5 184 61 1661 167 4 7 chr13 2983731 2984012 -98889157 - AluSx SINE Alu -31 281 2 328 225 28 0 chr13 2984563 2984634 -98888535 - MER5A DNA MER1_type -114 75 3 200 194 0 0 chr13 2984673 2984709 -98888460 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 2394 72 10 0 chr13 2984713 2985004 -98888165 - AluSg SINE Alu -16 294 1 1300 193 127 36 chr13 2985060 2985391 -98887778 + MER93b LTR ERV1 13 373 0 468 225 83 0 chr13 2985406 2985529 -98887640 - L1ME1 LINE L1 0 6334 6041 1884 172 0 0 chr13 2985541 2985832 -98887337 + AluJb SINE Alu 13 303 -9 1224 175 13 4 chr13 2985988 2986216 -98886953 - L1ME1 LINE L1 -134 6032 5803 24 53 0 0 chr13 2986297 2986335 -98886834 + AT_rich Low_complexity Low_complexity 1 38 0 892 179 24 126 chr13 2986356 2986602 -98886567 - AluJo SINE Alu -89 223 3 1460 193 56 11 chr13 2986632 2986901 -98886268 + AluJo SINE Alu 1 281 -31 324 0 0 0 chr13 2986901 2986937 -98886232 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2560 70 0 0 chr13 2987291 2987593 -98885576 - AluSx SINE Alu -10 302 1 1172 59 0 0 chr13 2987594 2987729 -98885440 - AluSq/x SINE Alu -177 135 1 913 171 96 64 chr13 2987734 2987985 -98885184 - MER33 DNA MER1_type -58 266 8 184 276 26 26 chr13 2988153 2988229 -98884940 - MIR3 SINE MIR -43 165 90 346 313 6 39 chr13 2988408 2988590 -98884579 - MER5A DNA MER1_type -13 176 1 1669 124 83 4 chr13 2988789 2989091 -98884078 + AluSx SINE Alu 5 327 0 23 33 0 0 chr13 2989130 2989160 -98884009 + AT_rich Low_complexity Low_complexity 1 30 0 1955 101 4 43 chr13 2989195 2989498 -98883671 + AluSq SINE Alu 17 308 0 22 0 0 0 chr13 2989566 2989588 -98883581 + AT_rich Low_complexity Low_complexity 1 22 0 1557 173 20 14 chr13 2989595 2989890 -98883279 + AluJo SINE Alu 1 297 -15 1631 175 158 25 chr13 2990487 2990645 -98882524 + MLT1C LTR MaLR 1 137 -330 2008 88 62 39 chr13 2990645 2990950 -98882219 + AluSx SINE Alu 1 312 0 1631 175 158 25 chr13 2990950 2991197 -98881972 + MLT1C LTR MaLR 137 460 -7 889 166 31 34 chr13 2991280 2991483 -98881686 - MLT1A1 LTR MaLR 0 374 144 1935 82 7 44 chr13 2993070 2993340 -98879829 + AluSq SINE Alu 34 293 -20 28 0 0 0 chr13 2993549 2993577 -98879592 + AT_rich Low_complexity Low_complexity 1 28 0 412 61 30 30 chr13 2993932 2993998 -98879171 - Alu SINE Alu -251 67 2 940 157 0 24 chr13 2994427 2994593 -98878576 - MLT1A1 LTR MaLR -203 162 1 272 271 47 9 chr13 2994857 2994964 -98878205 - L1ME LINE L1 -509 5612 5502 2465 53 10 3 chr13 2995046 2995348 -98877821 + AluY SINE Alu 1 304 -7 2317 91 0 7 chr13 2995358 2995672 -98877497 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 2995870 2995897 -98877272 + AT_rich Low_complexity Low_complexity 1 27 0 1849 227 75 98 chr13 2995953 2997099 -98876070 + L1MC5 LINE L1 6788 7907 -54 1047 110 0 0 chr13 2997159 2997295 -98875874 + AluSq/x SINE Alu 1 136 -177 2048 118 10 7 chr13 2997295 2997583 -98875586 + AluSx SINE Alu 1 289 -23 205 217 0 29 chr13 2998352 2998421 -98874748 + T-rich Low_complexity Low_complexity 5 71 0 764 169 0 0 chr13 2998424 2998542 -98874627 - FLAM_C SINE Alu -15 118 1 286 263 74 0 chr13 2998862 2998957 -98874212 - MLT1J LTR MaLR -98 413 312 775 62 71 18 chr13 3000810 3000922 -98872247 + MER30 DNA MER1_type 2 119 -111 2227 97 7 7 chr13 3000925 3001224 -98871945 + AluSx SINE Alu 1 299 -13 358 264 124 3 chr13 3001321 3001518 -98871651 + L1ME1 LINE L1 1325 1667 -5293 1522 287 85 36 chr13 3001534 3001627 -98871542 + L1ME1 LINE L1 1495 1582 -5556 1638 157 20 34 chr13 3001627 3001921 -98871248 - AluJb SINE Alu -22 290 1 1522 287 85 36 chr13 3001921 3002863 -98870306 + L1ME1 LINE L1 1582 2728 -4410 2541 60 0 10 chr13 3002869 3003183 -98869986 - AluY SINE Alu 0 311 1 708 90 0 63 chr13 3003234 3003345 -98869824 + MSTA LTR MaLR 1 104 -324 1910 122 3 83 chr13 3003345 3003672 -98869497 - AluSx SINE Alu -7 305 5 2299 105 0 0 chr13 3003684 3003979 -98869190 - AluSg SINE Alu -14 296 2 4898 207 60 100 chr13 3003982 3004623 -98868546 + L1ME1 LINE L1 4514 5179 -1798 2191 95 4 0 chr13 3004623 3004896 -98868273 + AluSc SINE Alu 1 274 -35 4898 207 60 100 chr13 3004896 3005040 -98868129 + L1ME1 LINE L1 5179 5327 -1650 4519 25 2 2 chr13 3005040 3005561 -98867608 + L1PA3 LINE L1 5634 6154 -1 4898 207 60 100 chr13 3005561 3006701 -98866468 + L1ME1 LINE L1 5327 6389 -588 669 202 0 0 chr13 3006701 3006815 -98866354 - FLAM_C SINE Alu -27 116 3 4898 207 60 100 chr13 3006815 3007314 -98865855 + L1ME1 LINE L1 6389 6907 -70 1899 84 4 48 chr13 3008075 3008348 -98864821 - AluSq SINE Alu -8 305 45 1082 217 63 3 chr13 3008577 3008863 -98864306 + MER33 DNA MER1_type 20 322 -2 27 29 0 0 chr13 3009018 3009052 -98864117 + AT_rich Low_complexity Low_complexity 1 34 0 1999 118 4 11 chr13 3009056 3009336 -98863833 - AluSx SINE Alu -34 278 1 273 57 0 0 chr13 3009359 3009394 -98863775 + (T)n Simple_repeat Simple_repeat 1 35 0 2268 103 3 0 chr13 3009495 3009796 -98863373 - AluSp SINE Alu -11 302 1 324 0 0 0 chr13 3009805 3009841 -98863328 + (T)n Simple_repeat Simple_repeat 1 36 0 273 200 0 14 chr13 3010115 3010185 -98862984 + AluY SINE Alu 129 197 -104 245 119 48 0 chr13 3010182 3010224 -98862945 + Alu SINE Alu 90 133 0 * 201 323 113 0 chr13 3010918 3011042 -98862127 + L3 LINE CR1 1276 1413 -164 306 304 0 0 chr13 3011174 3011332 -98861837 + (CA)n Simple_repeat Simple_repeat 1 158 0 324 210 0 0 chr13 3011338 3011400 -98861769 - MER5B DNA MER1_type -78 100 39 2267 131 0 6 chr13 3011984 3012298 -98860871 - AluSx SINE Alu 0 312 1 468 257 40 23 chr13 3012306 3012481 -98860688 - L1MC5 LINE L1 -37 7924 7747 399 58 0 0 chr13 3013105 3013157 -98860012 + MADE1 DNA Mariner 1 52 -28 522 128 0 0 chr13 3013497 3013575 -98859594 - AluSp/q SINE Alu -14 299 222 380 263 15 7 chr13 3013778 3013915 -98859254 + L1M4 LINE L1 4995 5132 -1014 2292 67 0 53 chr13 3013916 3014263 -98858906 + AluSq SINE Alu 1 331 0 378 291 268 0 chr13 3014339 3014518 -98858651 - MIR SINE MIR -1 261 35 1911 135 28 0 chr13 3014615 3014897 -98858272 + AluSx SINE Alu 3 292 -20 2287 120 3 0 chr13 3015633 3015941 -98857228 + AluSx SINE Alu 1 309 -3 962 133 0 14 chr13 3016086 3016229 -98856940 + FLAM_C SINE Alu 3 143 0 2161 124 17 0 chr13 3016979 3017270 -98855899 + AluSx SINE Alu 1 296 -16 2186 112 11 0 chr13 3017272 3017558 -98855611 + AluSx SINE Alu 1 289 -23 2266 116 3 0 chr13 3017560 3017863 -98855306 + AluSx SINE Alu 1 304 -8 343 291 68 0 chr13 3018505 3018622 -98854547 - L2 LINE L2 -25 3247 3123 219 139 0 0 chr13 3019461 3019497 -98853672 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 242 116 23 0 chr13 3019515 3019558 -98853611 + CT-rich Low_complexity Low_complexity 2 45 0 1799 180 0 19 chr13 3019558 3019875 -98853294 - AluJo SINE Alu -1 311 1 323 229 14 14 chr13 3020435 3020505 -98852664 + L2 LINE L2 3205 3274 -39 197 327 39 19 chr13 3020655 3020759 -98852410 + MIR SINE MIR 65 170 -92 1284 194 34 60 chr13 3021023 3021373 -98851796 + MER7C DNA MER2_type 1 341 -261 520 141 66 25 chr13 3021481 3021594 -98851575 + MER7C DNA MER2_type 315 432 -170 648 176 42 0 chr13 3021594 3021713 -98851456 + MER6 DNA MER2_type 1 124 -741 489 133 0 22 chr13 3021709 3021799 -98851370 + MER6 DNA MER2_type 778 865 0 * 1083 134 6 0 chr13 3021799 3021962 -98851207 + MER7C DNA MER2_type 449 612 0 2345 160 47 13 chr13 3022630 3023079 -98850090 - MER101 LTR ERV1 0 474 11 381 253 104 0 chr13 3023150 3023304 -98849865 - HAL1 LINE L1 -1599 908 739 219 36 0 0 chr13 3023468 3023496 -98849673 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2031 125 0 0 chr13 3023496 3023775 -98849394 - AluSx SINE Alu -33 279 1 208 182 18 55 chr13 3024525 3024580 -98848589 - L2 LINE L2 -1 3271 3219 600 330 51 3 chr13 3024749 3025103 -98848066 - L1ME LINE L1 -412 5758 5388 263 196 54 76 chr13 3025542 3025634 -98847535 + L2 LINE L2 2626 2715 -599 2208 118 3 3 chr13 3025634 3025931 -98847238 + AluSx SINE Alu 1 297 -15 1111 40 0 40 chr13 3025931 3026160 -98847009 + (TA)n Simple_repeat Simple_repeat 1 219 0 2166 89 3 74 chr13 3027526 3027862 -98845307 - AluSp SINE Alu -1 312 1 926 146 0 20 chr13 3027866 3028017 -98845152 - FRAM SINE Alu -8 168 21 2203 114 7 3 chr13 3029244 3029542 -98843627 - AluSq SINE Alu -14 299 1 1535 151 22 80 chr13 3029821 3029953 -98843216 + AluJb SINE Alu 1 139 -173 2211 135 0 3 chr13 3029953 3030264 -98842905 + AluSx SINE Alu 1 310 -2 1535 151 22 80 chr13 3030264 3030455 -98842714 + AluJb SINE Alu 139 305 -7 1737 164 12 49 chr13 3030692 3031016 -98842153 + AluJo SINE Alu 1 312 0 2026 135 0 13 chr13 3031017 3031320 -98841849 + AluJb SINE Alu 1 299 -13 2492 82 0 0 chr13 3031482 3031788 -98841381 + AluY SINE Alu 1 306 -5 2285 102 7 0 chr13 3031788 3032083 -98841086 + AluSp SINE Alu 1 297 -16 4198 126 38 7 chr13 3032083 3032934 -98840235 + L1MA4A LINE L1 5322 6302 -1 2199 113 0 25 chr13 3032935 3033255 -98839914 + AluSx SINE Alu 1 312 0 255 79 0 0 chr13 3034368 3034406 -98838763 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 560 103 32 174 chr13 3036504 3036611 -98836558 - FLAM_C SINE Alu -169 133 53 222 37 0 0 chr13 3036611 3036638 -98836531 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 560 103 32 174 chr13 3036638 3036685 -98836484 - FLAM_C SINE Alu -249 53 1 192 250 36 18 chr13 3037801 3037857 -98835312 + MIR SINE MIR 34 90 -118 2501 85 0 3 chr13 3038786 3039093 -98834076 + AluSc SINE Alu 1 306 -3 208 342 26 13 chr13 3039305 3039381 -98833788 + L2 LINE L2 3171 3247 -25 1391 166 158 4 chr13 3040643 3040902 -98832267 + AluJo SINE Alu 2 300 -2 350 256 19 30 chr13 3041115 3041219 -98831950 + MIR SINE MIR 65 162 -46 198 292 0 0 chr13 3041592 3041640 -98831529 + L2 LINE L2 3223 3270 -2 261 262 56 19 chr13 3042350 3042457 -98830712 + L2 LINE L2 2420 2530 -784 2045 144 3 10 chr13 3042473 3042771 -98830398 - AluSx SINE Alu -14 298 3 226 238 16 32 chr13 3043592 3043655 -98829514 + LTR16A LTR ERVL 245 306 -144 1589 143 47 14 chr13 3044185 3044464 -98828705 + AluJb SINE Alu 12 299 -13 378 68 85 0 chr13 3045500 3045559 -98827610 - U6 snRNA snRNA -43 64 1 1446 179 65 21 chr13 3045559 3045849 -98827320 - AluJo SINE Alu -9 303 1 1060 129 101 60 chr13 3045906 3046123 -98827046 + AluSg/x SINE Alu 80 305 -7 23 0 0 0 chr13 3046165 3046188 -98826981 + AT_rich Low_complexity Low_complexity 1 23 0 2175 111 0 0 chr13 3046192 3046471 -98826698 + AluY SINE Alu 1 279 -32 198 0 0 0 chr13 3046474 3046496 -98826673 + (TAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr13 3046556 3046592 -98826577 + AT_rich Low_complexity Low_complexity 1 36 0 231 367 14 50 chr13 3047122 3047261 -98825908 + MIR3 SINE MIR 68 201 -7 544 233 48 0 chr13 3047476 3047622 -98825547 + MLT1H LTR MaLR 75 227 -322 330 266 86 22 chr13 3047684 3047823 -98825346 + MLT1H LTR MaLR 341 488 -67 1003 135 0 0 chr13 3047836 3047977 -98825192 + AluSg/x SINE Alu 148 288 -24 642 265 24 6 chr13 3048104 3048274 -98824895 - L1ME3A LINE L1 -295 5875 5703 251 242 11 105 chr13 3048774 3048869 -98824300 - MER91B DNA MER1_type -104 86 1 180 294 94 24 chr13 3048869 3048947 -98824222 - L2 LINE L2 -52 3220 3137 1534 204 7 0 chr13 3049286 3049570 -98823599 + AluJo SINE Alu 1 286 -26 285 276 72 23 chr13 3049594 3049772 -98823397 + MIR3 SINE MIR 6 186 -76 2018 152 7 3 chr13 3049958 3050261 -98822908 - AluSx SINE Alu -8 304 1 2451 83 0 0 chr13 3050564 3050866 -98822303 + AluSc SINE Alu 1 302 -7 1558 179 74 14 chr13 3051326 3051689 -98821480 + L1MB4 LINE L1 5790 6174 -6 1358 123 202 40 chr13 3051778 3052031 -98821138 + AluSg SINE Alu 1 294 -6 305 103 0 118 chr13 3053745 3053813 -98819356 - Alu SINE Alu -9 293 234 850 129 0 0 chr13 3053832 3053948 -98819221 - AluJb SINE Alu -196 116 1 2149 75 78 24 chr13 3055144 3055438 -98817731 + AluY SINE Alu 1 310 -1 2228 87 7 0 chr13 3057051 3057358 -98815811 + AluY SINE Alu 1 311 0 2073 87 11 7 chr13 3057423 3057710 -98815459 + AluSx SINE Alu 5 292 -20 21 0 0 0 chr13 3058345 3058366 -98814803 + GC_rich Low_complexity Low_complexity 1 21 0 992 151 0 7 chr13 3058570 3058722 -98814447 + AluSg/x SINE Alu 149 299 -13 26 0 0 0 chr13 3058879 3058905 -98814264 + AT_rich Low_complexity Low_complexity 1 26 0 2333 134 27 2 chr13 3059035 3059439 -98813730 - L1MC1 LINE L1 -361 5972 5559 560 154 106 49 chr13 3059440 3059563 -98813606 + FLAM_C SINE Alu 1 130 -3 2349 92 3 3 chr13 3059611 3059916 -98813253 - AluSq SINE Alu -8 305 1 270 328 65 44 chr13 3060015 3060490 -98812679 + L2 LINE L2 2736 3260 -12 619 105 61 18 chr13 3060803 3060917 -98812252 + L1MC/D LINE L1 5453 5571 -762 1804 136 19 49 chr13 3060919 3061088 -98812081 - AluJo SINE Alu -13 299 127 2478 68 0 6 chr13 3061088 3061399 -98811770 - AluY SINE Alu -2 309 1 2360 100 13 0 chr13 3061399 3061699 -98811470 - AluSx SINE Alu -8 304 1 1804 136 19 49 chr13 3061699 3061836 -98811333 - AluJo SINE Alu -183 129 1 790 201 37 123 chr13 3061894 3062218 -98810951 + MLT1A1 LTR MaLR 1 296 -69 439 133 0 67 chr13 3062260 3062287 -98810882 + MLT1A1 LTR MaLR 282 309 -56 2251 114 7 0 chr13 3062287 3062593 -98810576 - AluSx SINE Alu -4 308 1 439 133 0 67 chr13 3062593 3062655 -98810514 + MLT1A1 LTR MaLR 309 365 0 278 321 58 21 chr13 3062711 3062901 -98810268 - L2 LINE L2 -552 2762 2566 2452 84 0 0 chr13 3063002 3063298 -98809871 + AluSq SINE Alu 1 296 -17 958 170 44 0 chr13 3063325 3063484 -98809685 + FAM SINE Alu 5 170 -5 2272 106 3 0 chr13 3063495 3063787 -98809382 + AluSx SINE Alu 4 296 -16 663 71 20 0 chr13 3063790 3063889 -98809280 - MER47A DNA MER2_type -85 281 181 1021 141 22 22 chr13 3063989 3064174 -98808995 - MER47A DNA MER2_type -158 208 24 1779 106 0 0 chr13 3064770 3064996 -98808173 - AluSg SINE Alu -84 226 1 815 138 0 32 chr13 3065007 3065130 -98808039 - FLAM_C SINE Alu -18 125 7 2331 87 3 0 chr13 3065649 3065937 -98807232 - AluSp SINE Alu -5 308 20 1364 197 23 83 chr13 3066280 3066666 -98806503 + MLT1A1 LTR MaLR 1 363 -2 261 0 0 0 chr13 3066672 3066701 -98806468 + (TG)n Simple_repeat Simple_repeat 1 29 0 975 157 41 15 chr13 3066754 3066951 -98806218 + L1MB2 LINE L1 5968 6169 -2 248 312 26 79 chr13 3067645 3067692 -98805477 - MER91B DNA MER1_type -10 180 132 1989 147 3 10 chr13 3067692 3067991 -98805178 + AluSx SINE Alu 6 302 -10 248 312 26 79 chr13 3067991 3068132 -98805037 - MER91B DNA MER1_type -58 132 2 662 241 27 68 chr13 3068371 3068512 -98804657 - MIR SINE MIR -21 241 111 1148 181 114 55 chr13 3068512 3068855 -98804314 - MLT1A1 LTR MaLR 0 365 3 662 241 27 68 chr13 3068855 3068933 -98804236 - MIR SINE MIR -151 111 31 254 65 87 0 chr13 3068986 3069032 -98804137 - FLAM_A SINE Alu -1 132 83 210 125 0 83 chr13 3069042 3069090 -98804079 + (TTTTTA)n Simple_repeat Simple_repeat 5 48 0 199 255 128 39 chr13 3069880 3069982 -98803187 - L2 LINE L2 0 3272 3162 661 153 68 2 chr13 3070120 3070363 -98802806 + AluJ SINE Alu 2 303 -9 2256 121 0 0 chr13 3070652 3070949 -98802220 + AluSx SINE Alu 1 297 -15 100 68 0 0 chr13 3070950 3071141 -98802028 + AT_rich Low_complexity Low_complexity 1 191 0 1282 277 134 34 chr13 3071183 3071883 -98801286 - L1MC4a LINE L1 -1779 6029 5260 928 131 0 22 chr13 3071884 3072021 -98801148 + AluJb SINE Alu 1 134 -178 21 0 0 0 chr13 3072023 3072044 -98801125 + AT_rich Low_complexity Low_complexity 1 21 0 827 148 28 7 chr13 3072122 3072264 -98800905 - FRAM SINE Alu -31 145 1 1555 174 26 0 chr13 3072322 3072586 -98800583 - AluJo SINE Alu -41 271 1 377 274 13 111 chr13 3072639 3072688 -98800481 + L2 LINE L2 3103 3155 -158 2105 144 3 3 chr13 3072688 3073000 -98800169 - AluSx SINE Alu 0 312 1 377 274 13 111 chr13 3073000 3073184 -98799985 + L2 LINE L2 3155 3313 0 2095 120 7 7 chr13 3073257 3073548 -98799621 + AluSx SINE Alu 1 291 -21 406 100 11 0 chr13 3073684 3073756 -98799413 + Alu SINE Alu 1 53 -255 297 188 0 0 chr13 3074207 3074255 -98798914 + MLT1A1 LTR MaLR 96 143 -222 1910 100 0 4 chr13 3074263 3074503 -98798666 - AluSc SINE Alu -53 256 18 * 2112 91 4 0 chr13 3074501 3074765 -98798404 - AluSp SINE Alu -48 265 1 958 124 14 0 chr13 3074773 3074918 -98798251 - AluSg/x SINE Alu -38 272 126 1084 155 52 0 chr13 3074920 3075114 -98798055 + MLT1A1 LTR MaLR 162 365 0 2279 29 39 72 chr13 3075735 3076041 -98797128 + AluY SINE Alu 1 296 -15 2357 97 0 0 chr13 3076759 3077057 -98796112 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr13 3077081 3077101 -98796068 + (CAA)n Simple_repeat Simple_repeat 2 21 0 461 65 0 0 chr13 3077160 3077222 -98795947 - Alu SINE Alu -10 300 239 2269 82 0 0 chr13 3077389 3077700 -98795469 + AluSg SINE Alu 9 310 0 278 276 125 48 chr13 3077771 3078011 -98795158 + L1ME3A LINE L1 5539 5810 -311 1974 133 7 0 chr13 3078011 3078296 -98794873 + AluSx SINE Alu 1 287 -25 278 276 125 48 chr13 3078296 3078366 -98794803 + L1ME3A LINE L1 5810 5873 -248 837 157 85 20 chr13 3078861 3079014 -98794155 + AluJb SINE Alu 137 299 -13 666 172 15 60 chr13 3079253 3079387 -98793782 - FLAM_C SINE Alu -1 132 5 1017 127 14 0 chr13 3079414 3079556 -98793613 - U4 snRNA snRNA -1 144 1 1858 99 4 11 chr13 3079624 3079886 -98793283 + AluSx SINE Alu 42 301 -11 2238 123 3 3 chr13 3080679 3080988 -98792181 + AluSq SINE Alu 1 309 -4 1939 142 33 0 chr13 3080993 3081295 -98791874 + AluJb SINE Alu 1 312 0 650 165 9 9 chr13 3081747 3081862 -98791307 + LTR56 LTR ERV1 4 118 -327 2497 65 0 0 chr13 3081866 3082160 -98791009 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 3083166 3083194 -98789975 + AT_rich Low_complexity Low_complexity 1 28 0 349 260 30 0 chr13 3083202 3083302 -98789867 + L1ME3A LINE L1 6065 6167 -3 1403 212 42 3 chr13 3083302 3083585 -98789584 + AluJb SINE Alu 1 294 -18 2329 89 13 0 chr13 3083595 3083897 -98789272 + AluY SINE Alu 1 306 -5 2056 120 3 13 chr13 3083940 3084239 -98788930 + AluSx SINE Alu 1 296 -16 450 0 0 0 chr13 3085578 3085628 -98787541 + (TG)n Simple_repeat Simple_repeat 2 51 0 1729 124 29 18 chr13 3085636 3085911 -98787258 - AluJo SINE Alu -30 282 5 22 0 0 0 chr13 3086961 3086983 -98786186 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 3087419 3087440 -98785729 + AT_rich Low_complexity Low_complexity 1 21 0 195 261 15 46 chr13 3088608 3088673 -98784496 - MIR SINE MIR -4 258 196 2389 85 0 19 chr13 3089437 3089756 -98783413 + AluSq SINE Alu 1 313 0 233 242 0 30 chr13 3089926 3089992 -98783177 - L2 LINE L2 -325 2988 2925 30 59 0 0 chr13 3090596 3090647 -98782522 + GC_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr13 3090758 3090792 -98782377 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 3090835 3090856 -98782313 + GC_rich Low_complexity Low_complexity 1 21 0 2341 86 3 3 chr13 3091652 3091953 -98781216 + AluSp SINE Alu 2 302 -11 998 154 0 57 chr13 3092718 3092893 -98780276 - FRAM SINE Alu -11 165 1 290 244 48 48 chr13 3093095 3093343 -98779826 + L1ME4a LINE L1 5676 5915 -206 390 272 202 6 chr13 3093986 3094159 -98779010 - MIR SINE MIR -25 237 31 2299 113 0 0 chr13 3094212 3094512 -98778657 + AluSg SINE Alu 1 300 -10 2085 124 0 0 chr13 3094772 3095074 -98778095 + AluSx SINE Alu 1 302 0 1628 125 136 15 chr13 3095318 3095582 -98777587 + AluJb SINE Alu 1 296 -16 233 138 0 17 chr13 3095608 3095666 -98777503 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 440 177 38 20 chr13 3095680 3095818 -98777351 - AluJb SINE Alu -151 161 2 262 242 0 45 chr13 3095844 3095910 -98777259 + MER21B LTR ERV1 6 68 -795 2616 211 154 32 chr13 3095943 3096380 -98776789 + MER21B LTR ERV1 19 401 -462 2045 91 48 42 chr13 3096380 3096689 -98776480 - AluSx SINE Alu -1 311 1 2616 211 154 32 chr13 3096689 3096991 -98776178 + MER21B LTR ERV1 401 848 -15 1957 130 27 0 chr13 3097336 3097628 -98775541 - AluJb SINE Alu -8 304 5 2075 134 0 3 chr13 3097651 3097941 -98775228 - AluSx SINE Alu -23 289 1 338 37 0 37 chr13 3098012 3098066 -98775103 - L1MB3 LINE L1 -2 6181 6130 2125 70 11 15 chr13 3099079 3099349 -98773820 - AluY SINE Alu -11 300 32 1811 115 14 22 chr13 3099722 3100000 -98773169 - AluSx SINE Alu -12 300 25 931 162 61 71 chr13 3100850 3101048 -98772121 + AluJb SINE Alu 89 284 -28 2215 89 7 23 chr13 3101092 3101395 -98771774 + AluSg SINE Alu 1 298 -12 258 269 12 88 chr13 3101410 3101570 -98771599 - L1ME3 LINE L1 -81 6081 5934 1219 231 152 71 chr13 3101610 3102033 -98771136 - L1ME3 LINE L1 -219 5951 5564 1921 129 10 26 chr13 3102033 3102336 -98770833 - AluSq SINE Alu -15 298 1 1873 102 0 117 chr13 3102339 3102682 -98770487 - AluSx SINE Alu -9 303 1 1219 231 152 71 chr13 3102682 3102951 -98770218 - L1ME3 LINE L1 -607 5563 5197 2224 108 3 0 chr13 3104764 3105050 -98768119 - AluSx SINE Alu -25 287 1 1048 99 0 0 chr13 3105089 3105220 -98767949 + AluSq/x SINE Alu 1 131 -182 271 315 35 21 chr13 3106094 3106237 -98766932 + MIR3 SINE MIR 50 194 -14 727 208 126 26 chr13 3106250 3106481 -98766688 + MIR SINE MIR 7 260 -2 2001 101 45 3 chr13 3106531 3106818 -98766351 - AluY SINE Alu -12 299 1 1492 170 69 22 chr13 3106901 3107177 -98765992 + AluJo SINE Alu 4 292 -20 228 35 0 0 chr13 3107177 3107206 -98765963 + (CATA)n Simple_repeat Simple_repeat 2 30 0 382 292 90 7 chr13 3107254 3107398 -98765771 + MIR SINE MIR 29 184 -78 2328 113 0 0 chr13 3107632 3107932 -98765237 + AluSx SINE Alu 1 300 -12 1506 133 0 5 chr13 3108174 3108384 -98764785 + AluJb SINE Alu 1 209 -103 2216 121 82 3 chr13 3108384 3108611 -98764558 - MER83B LTR ERV1 0 378 114 1553 128 139 4 chr13 3108611 3108877 -98764292 + AluJb SINE Alu 1 302 0 2216 121 82 3 chr13 3108877 3108989 -98764180 - MER83B LTR ERV1 -264 114 12 286 108 0 0 chr13 3108988 3109025 -98764144 + AluJ/FRAM SINE Alu 230 266 -36 * 180 111 0 0 chr13 3109069 3109096 -98764073 + (A)n Simple_repeat Simple_repeat 1 27 0 1803 152 10 14 chr13 3109284 3109573 -98763596 + AluJb SINE Alu 1 288 -24 405 55 0 0 chr13 3110256 3110311 -98762858 - L1PB1 LINE L1 -3 6148 6094 2404 86 0 9 chr13 3110312 3110627 -98762542 - AluSx SINE Alu 0 312 1 2239 157 86 80 chr13 3110628 3110746 -98762423 - L1MB4 LINE L1 -43 6137 6021 439 152 248 38 chr13 3110746 3110851 -98762318 - FLAM_A SINE Alu -5 128 2 2239 157 86 80 chr13 3110851 3111323 -98761846 - L1MB4 LINE L1 -159 6021 5543 837 194 15 77 chr13 3112066 3112126 -98761043 - MLT2C1 LTR ERVL -4 393 331 2541 65 0 3 chr13 3112126 3112432 -98760737 + AluSg SINE Alu 2 306 -4 837 194 15 77 chr13 3112432 3112704 -98760465 - MLT2C1 LTR ERVL -66 331 18 419 202 121 0 chr13 3112962 3113061 -98760108 + Tigger4(Zombi) DNA MER2_type 2 112 -2619 1302 71 0 0 chr13 3113066 3113220 -98759949 - AluSg/x SINE Alu -11 299 146 1100 168 58 0 chr13 3113220 3113428 -98759741 + Tigger4(Zombi) DNA MER2_type 2511 2730 -1 2101 101 3 42 chr13 3113512 3113818 -98759351 - AluSx SINE Alu -17 295 2 387 242 73 84 chr13 3113988 3114061 -98759108 - MER104 DNA Tc2 -1720 178 106 2264 88 7 14 chr13 3114061 3114355 -98758814 + AluSx SINE Alu 1 292 -20 387 242 73 84 chr13 3114355 3114459 -98758710 - MER104 DNA Tc2 -1792 106 3 252 246 304 7 chr13 3116209 3116347 -98756822 + MIR SINE MIR 81 259 -3 370 238 0 12 chr13 3117494 3117574 -98755595 + Tigger5 DNA MER2_type 1 79 -2244 280 307 0 0 chr13 3117577 3117652 -98755517 - Tigger5 DNA MER2_type -7 2316 2242 * 356 197 56 0 chr13 3117646 3117717 -98755452 + Tigger5 DNA MER2_type 2246 2320 -3 2172 118 23 0 chr13 3118635 3118939 -98754230 + AluSx SINE Alu 1 311 -1 2162 102 0 0 chr13 3118978 3119252 -98753917 + AluSg SINE Alu 1 274 -36 231 36 0 0 chr13 3119254 3119282 -98753887 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 119 47 chr13 3119333 3119569 -98753600 - L2 LINE L2 -25 3247 2995 330 213 185 0 chr13 3119822 3119930 -98753239 + MIR SINE MIR 117 244 -18 353 274 85 81 chr13 3119973 3120221 -98752948 - L2 LINE L2 -52 3261 3013 344 206 103 59 chr13 3120222 3120358 -98752811 - MLT1K LTR MaLR -2 586 445 327 267 204 0 chr13 3120638 3120829 -98752340 - L2 LINE L2 -338 2976 2747 2812 83 8 0 chr13 3121020 3121380 -98751789 + THE1B LTR MaLR 2 364 0 887 269 201 5 chr13 3121380 3121819 -98751350 + L2 LINE L2 1689 2213 -1101 27 29 0 0 chr13 3121919 3121953 -98751216 + AT_rich Low_complexity Low_complexity 1 34 0 1832 74 0 0 chr13 3123409 3123625 -98749544 - AluSc SINE Alu -13 296 81 1864 158 3 0 chr13 3124343 3124628 -98748541 - AluJb SINE Alu -26 286 1 270 73 0 0 chr13 3124815 3124856 -98748313 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1313 160 0 50 chr13 3124859 3125097 -98748072 - AluJo SINE Alu -30 282 57 707 212 8 0 chr13 3125399 3125531 -98747638 + FLAM_A SINE Alu 1 133 0 246 282 58 0 chr13 3125862 3125965 -98747204 + L1ME LINE L1 5675 5783 -338 2349 86 0 10 chr13 3126213 3126514 -98746655 + AluSq SINE Alu 1 298 -15 468 289 0 0 chr13 3126514 3126694 -98746475 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 239 0 0 chr13 3126747 3126793 -98746376 - L1MC4 LINE L1 -1339 6703 6658 247 309 0 0 chr13 3126819 3126916 -98746253 - L1MC4 LINE L1 -1327 6668 6612 201 268 0 0 chr13 3126919 3126960 -98746209 + (CATA)n Simple_repeat Simple_repeat 4 44 0 241 267 35 12 chr13 3126961 3127047 -98746122 + L1MC4 LINE L1 6614 6701 -1341 201 195 0 0 chr13 3127050 3127091 -98746078 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2886 16 0 0 chr13 3127604 3127915 -98745254 + AluYb8 SINE Alu 1 311 -7 1978 136 71 0 chr13 3128067 3128391 -98744778 - MER7A DNA MER2_type 0 346 2 2204 101 3 13 chr13 3129170 3129476 -98743693 + AluSg SINE Alu 6 308 -2 1114 135 29 48 chr13 3129845 3130052 -98743117 - MER3 DNA MER1_type 0 209 7 367 260 185 33 chr13 3130168 3130595 -98742574 - L1ME4a LINE L1 -68 6053 5562 299 170 20 0 chr13 3131014 3131114 -98742055 - L1ME4a LINE L1 -723 5439 5365 2093 106 14 7 chr13 3131121 3131413 -98741756 - AluSx SINE Alu -18 294 1 2533 41 3 0 chr13 3131418 3131710 -98741459 - AluY SINE Alu -17 294 2 1691 138 36 56 chr13 3133823 3134127 -98739042 + AluSx SINE Alu 1 298 -14 367 175 299 0 chr13 3134185 3134282 -98738887 + FLAM_A SINE Alu 1 126 -7 1974 112 4 4 chr13 3134290 3134557 -98738612 + AluSx SINE Alu 1 267 -45 988 102 0 0 chr13 3134681 3134809 -98738360 + AluSq/x SINE Alu 8 135 -178 1851 126 3 50 chr13 3134809 3135111 -98738058 + AluSx SINE Alu 1 288 -24 34 42 0 0 chr13 3135114 3135162 -98738007 + AT_rich Low_complexity Low_complexity 1 48 0 582 89 0 170 chr13 3135419 3135467 -98737702 + L1MA3 LINE L1 6093 6148 -157 2191 110 0 13 chr13 3135467 3135767 -98737402 + AluSc SINE Alu 1 296 -13 582 89 0 170 chr13 3135767 3135779 -98737390 + L1MA3 LINE L1 6148 6160 -145 1424 175 110 0 chr13 3135779 3136042 -98737127 + AluJb SINE Alu 1 292 -20 582 89 0 170 chr13 3136042 3136115 -98737054 + L1MA3 LINE L1 6160 6204 -101 491 150 62 0 chr13 3136262 3136342 -98736827 + FRAM SINE Alu 64 148 -28 739 193 7 0 chr13 3136353 3136488 -98736681 + FLAM_C SINE Alu 2 137 -6 572 125 0 0 chr13 3136682 3136770 -98736399 - AluJo SINE Alu -11 301 214 975 152 0 7 chr13 3136770 3136921 -98736248 - AluJo SINE Alu -162 150 1 477 127 0 13 chr13 3136972 3137051 -98736118 - AluJ/FRAM SINE Alu -9 303 226 1953 132 21 0 chr13 3137086 3137373 -98735796 + AluSx SINE Alu 2 294 -18 2014 149 0 0 chr13 3137550 3137839 -98735330 + AluSx SINE Alu 4 292 -20 201 279 128 0 chr13 3138143 3138229 -98734940 - MIR SINE MIR -74 188 92 2569 77 0 0 chr13 3138358 3138668 -98734501 - AluY SINE Alu -1 310 1 182 302 38 0 chr13 3138906 3138959 -98734210 - L2 LINE L2 -200 3072 3018 21 71 0 0 chr13 3139160 3139202 -98733967 + AT_rich Low_complexity Low_complexity 1 42 0 876 206 11 17 chr13 3139265 3139440 -98733729 + FRAM SINE Alu 1 173 -3 7193 56 8 0 chr13 3139445 3139673 -98733496 + L1PA7 LINE L1 4771 4996 -1158 2333 64 0 48 chr13 3139673 3139984 -98733185 + AluY SINE Alu 1 296 -15 7193 56 8 0 chr13 3139984 3141136 -98732033 + L1PA7 LINE L1 4996 6154 0 2393 83 0 13 chr13 3141141 3141442 -98731727 + AluSp SINE Alu 1 297 -16 216 273 57 23 chr13 3141737 3141825 -98731344 + L2 LINE L2 1177 1267 -2047 25 0 0 0 chr13 3141825 3141850 -98731319 + AT_rich Low_complexity Low_complexity 1 25 0 7667 25 1 225 chr13 3141850 3143224 -98729945 - SVA Other Other 0 1386 321 513 158 0 0 chr13 3143364 3143446 -98729723 + AluSg/x SINE Alu 218 299 -11 5630 146 44 29 chr13 3143577 3144828 -98728341 - L1MA9 LINE L1 0 6312 5043 306 143 0 0 chr13 3144826 3144875 -98728294 + L1MA9 LINE L1 4989 5037 -1109 * 638 311 65 26 chr13 3144878 3145296 -98727873 + L2 LINE L2 1033 1466 -1848 5072 84 1 3 chr13 3145439 3146108 -98727061 - THE1A-int LTR MaLR -912 668 1 2729 86 11 0 chr13 3146108 3146459 -98726710 - THE1A LTR MaLR 0 355 1 331 244 118 16 chr13 3146480 3146607 -98726562 - L2 LINE L2 -940 2374 2235 2190 168 7 30 chr13 3146734 3147138 -98726031 + MSTD LTR MaLR 2 396 0 831 216 52 43 chr13 3147365 3147595 -98725574 - MLT1A1 LTR MaLR 0 365 134 296 95 24 0 chr13 3147595 3147637 -98725532 - MLT1A1 LTR MaLR 0 457 415 1449 83 0 0 chr13 3147637 3147830 -98725339 + L1MA2 LINE L1 6112 6304 0 1165 180 50 116 chr13 3147850 3148212 -98724957 - MLT1A1 LTR MaLR -25 340 3 2846 192 33 6 chr13 3148228 3148748 -98724421 - MLT1A1-int LTR MaLR -6 1729 1196 1025 218 92 23 chr13 3148750 3149012 -98724157 - MLT2B3 LTR ERVL -237 317 38 419 171 12 37 chr13 3149043 3149125 -98724044 - MLT2B3 LTR ERVL -472 82 3 * 912 121 7 7 chr13 3149125 3149265 -98723904 - MLT1A1 LTR MaLR -225 140 1 2207 109 3 13 chr13 3149410 3149714 -98723455 - AluSx SINE Alu -11 301 1 918 198 0 0 chr13 3149774 3149936 -98723233 - FAM SINE Alu -13 162 1 21 36 0 0 chr13 3150059 3150087 -98723082 + AT_rich Low_complexity Low_complexity 1 28 0 327 311 0 0 chr13 3150455 3150545 -98722624 - L1MC4 LINE L1 -1339 6703 6614 204 217 0 0 chr13 3150557 3150603 -98722566 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 233 0 17 chr13 3150606 3150666 -98722503 - L1MCa LINE L1 -4362 2064 2006 260 167 93 0 chr13 3150711 3150765 -98722404 - L1MCa LINE L1 -4362 2064 2006 567 212 24 12 chr13 3150776 3150941 -98722228 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 232 200 0 0 chr13 3150948 3151003 -98722166 - L1MC4 LINE L1 -1339 6703 6649 326 292 0 0 chr13 3151030 3151119 -98722050 - L1MC4 LINE L1 -1339 6703 6615 250 296 23 0 chr13 3151144 3151232 -98721937 - L1MC4 LINE L1 -1339 6703 6614 238 309 0 0 chr13 3151285 3151374 -98721795 + L1MD3 LINE L1 6612 6668 -1327 254 311 0 15 chr13 3151375 3151507 -98721662 + (TATG)n Simple_repeat Simple_repeat 1 130 0 236 217 0 0 chr13 3151512 3151558 -98721611 + L1MC4 LINE L1 6658 6703 -1339 386 229 0 8 chr13 3151565 3151677 -98721492 + (TA)n Simple_repeat Simple_repeat 1 112 0 2361 80 0 13 chr13 3151677 3151979 -98721190 - AluSq SINE Alu -15 298 1 427 303 89 10 chr13 3152019 3152260 -98720909 - L1ME LINE L1 -301 5869 5613 2620 45 0 13 chr13 3153369 3153680 -98719489 - AluY SINE Alu -4 307 1 540 277 31 67 chr13 3155297 3155521 -98717648 + L1ME3A LINE L1 5691 5906 -264 820 210 112 33 chr13 3155568 3155615 -98717554 + MSTA LTR MaLR 1 43 -385 2240 130 16 24 chr13 3155615 3155992 -98717177 + THE1C LTR MaLR 1 374 -1 820 210 112 33 chr13 3155992 3156158 -98717011 + MSTA LTR MaLR 43 231 -197 * 1176 140 34 0 chr13 3156143 3156321 -98716848 + MSTA LTR MaLR 245 428 0 9752 167 16 4 chr13 3156321 3157950 -98715219 + MSTA-int LTR MaLR 1 1649 -2 1992 148 154 0 chr13 3157958 3158329 -98714840 + MSTA LTR MaLR 1 428 0 248 203 27 0 chr13 3159442 3159516 -98713653 + CT-rich Low_complexity Low_complexity 3 78 0 450 0 0 0 chr13 3159736 3159786 -98713383 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3473 156 84 90 chr13 3160147 3160594 -98712575 + L1MDa LINE L1 944 1392 -5148 2134 127 0 13 chr13 3160594 3160902 -98712267 + AluSx SINE Alu 1 304 -8 3473 156 84 90 chr13 3160902 3160923 -98712246 + L1MDa LINE L1 1392 1412 -5128 2268 107 0 0 chr13 3160923 3161223 -98711946 + AluSc SINE Alu 1 300 -9 3473 156 84 90 chr13 3161223 3161399 -98711770 + L1MDa LINE L1 1412 1588 -4952 1877 101 0 0 chr13 3161399 3161669 -98711500 + AluSg SINE Alu 36 305 0 3473 156 84 90 chr13 3161669 3161951 -98711218 + L1MDa LINE L1 1588 1869 -4671 2478 87 0 0 chr13 3161951 3162250 -98710919 + AluSg SINE Alu 1 299 -11 3473 156 84 90 chr13 3162250 3162345 -98710824 + L1MDa LINE L1 1869 1963 -4577 1752 174 0 0 chr13 3162345 3162673 -98710496 + AluJb SINE Alu 1 328 0 287 238 158 26 chr13 3162833 3162947 -98710222 - MLT1K LTR MaLR -358 230 87 609 239 15 27 chr13 3163038 3163207 -98709962 + L1M4 LINE L1 3455 3623 -2523 2021 127 27 0 chr13 3163207 3163499 -98709670 + AluSx SINE Alu 1 300 -12 609 239 15 27 chr13 3163499 3163551 -98709618 + L1M4 LINE L1 3623 3674 -2472 429 207 35 26 chr13 3163558 3163674 -98709495 - L1ME LINE L1 -374 5792 5676 2313 93 0 3 chr13 3163683 3163985 -98709184 - AluSg SINE Alu -9 301 1 1078 83 0 0 chr13 3163985 3164118 -98709051 - AluSc SINE Alu -176 133 1 1449 202 84 41 chr13 3164118 3164634 -98708535 - L1ME LINE L1 -676 5490 4998 2181 104 0 17 chr13 3164634 3164953 -98708216 + AluSq SINE Alu 1 314 0 1449 202 84 41 chr13 3164953 3164984 -98708185 - L1ME LINE L1 -1168 4998 4970 2521 57 0 0 chr13 3164984 3165281 -98707888 + AluY SINE Alu 1 297 -14 1449 202 84 41 chr13 3165281 3165292 -98707877 - L1ME LINE L1 -1196 4970 4961 2607 51 0 13 chr13 3165292 3165606 -98707563 + AluY SINE Alu 2 311 0 963 114 0 0 chr13 3166024 3166155 -98707014 + AluSg/x SINE Alu 162 292 -18 1253 211 29 76 chr13 3166158 3166302 -98706867 - L1ME LINE L1 -1214 4932 4783 1793 145 9 52 chr13 3166302 3166626 -98706543 - AluJb SINE Alu -2 310 1 1253 211 29 76 chr13 3166626 3166861 -98706308 - L1ME LINE L1 -1363 4783 4571 1717 143 48 0 chr13 3166861 3167133 -98706036 + AluJb SINE Alu 1 285 -27 2470 238 79 9 chr13 3167152 3167366 -98705803 - L1ME LINE L1 -2047 4099 3901 243 0 0 0 chr13 3167366 3167393 -98705776 + (TG)n Simple_repeat Simple_repeat 1 27 0 2470 238 79 9 chr13 3167393 3168090 -98705079 - L1ME LINE L1 -2245 3901 3124 2197 93 3 42 chr13 3168139 3168504 -98704665 + AluSp SINE Alu 1 313 0 2302 85 3 0 chr13 3168532 3168862 -98704307 + AluSp SINE Alu 1 331 0 445 271 119 96 chr13 3169956 3170138 -98703031 + MIR SINE MIR 5 197 -65 2203 99 0 3 chr13 3170138 3170446 -98702723 - AluSp SINE Alu 0 307 1 445 271 119 96 chr13 3170446 3170513 -98702656 + MIR SINE MIR 197 261 -1 1734 196 30 45 chr13 3170639 3171104 -98702065 - L1ME3A LINE L1 -83 6087 5630 1675 147 11 21 chr13 3171473 3171759 -98701410 + AluJb SINE Alu 1 283 -29 486 255 53 55 chr13 3171784 3172062 -98701107 + MIR SINE MIR 25 262 0 380 333 53 62 chr13 3172168 3172393 -98700776 + L2 LINE L2 3050 3272 0 2294 115 3 0 chr13 3172711 3173023 -98700146 + AluSq SINE Alu 1 313 0 290 298 95 18 chr13 3173143 3173311 -98699858 - L2 LINE L2 -122 3191 3011 * 343 252 134 39 chr13 3173310 3173437 -98699732 + L2 LINE L2 3175 3313 0 251 382 52 75 chr13 3173662 3174010 -98699159 + L2 LINE L2 2918 3257 -15 2335 92 3 13 chr13 3174223 3174529 -98698640 - AluSg SINE Alu -7 303 1 401 289 77 58 chr13 3174750 3174958 -98698211 + L3 LINE CR1 1366 1577 0 229 341 70 31 chr13 3175153 3175282 -98697887 + MIR SINE MIR 1 135 -73 2459 51 0 35 chr13 3175779 3176091 -98697078 + AluY SINE Alu 1 301 -10 22 35 0 0 chr13 3176968 3176997 -98696172 + AT_rich Low_complexity Low_complexity 1 29 0 265 339 36 9 chr13 3177188 3177300 -98695869 - MIR SINE MIR -141 121 7 2303 112 3 0 chr13 3177458 3177763 -98695406 - AluSx SINE Alu -6 306 1 332 238 62 0 chr13 3178581 3178661 -98694508 + L2 LINE L2 3224 3308 -5 428 301 75 40 chr13 3178857 3179056 -98694113 + MIR3 SINE MIR 2 207 -1 181 280 40 40 chr13 3179034 3179109 -98694060 + L2 LINE L2 3219 3293 -20 * 11979 91 21 1 chr13 3179132 3180898 -98692271 + L1PA7 LINE L1 8 1769 -4682 15126 88 39 0 chr13 3180898 3183158 -98690011 + L1PA7 LINE L1 3521 5861 -608 2039 92 0 26 chr13 3183158 3183429 -98689740 + AluSg SINE Alu 3 266 -44 15126 88 39 0 chr13 3183429 3184058 -98689111 + L1PA7 LINE L1 5861 6464 -5 11979 91 21 1 chr13 3184058 3184076 -98689093 + L1PA7 LINE L1 1769 1785 -4666 24 0 0 0 chr13 3185297 3185321 -98687848 + AT_rich Low_complexity Low_complexity 1 24 0 2415 66 0 20 chr13 3185681 3185983 -98687186 - AluY SINE Alu -15 296 1 779 150 72 26 chr13 3186034 3186227 -98686942 - LTR54 LTR ERV1 0 510 309 290 267 203 52 chr13 3186380 3186463 -98686706 + L2 LINE L2 2881 2950 -322 2362 94 0 0 chr13 3186463 3186771 -98686398 + AluSx SINE Alu 2 309 -3 290 267 203 52 chr13 3186771 3187021 -98686148 + L2 LINE L2 2950 3267 -5 336 286 68 42 chr13 3187228 3187420 -98685749 + MIR3 SINE MIR 3 199 -9 722 165 8 30 chr13 3188368 3188501 -98684668 - FLAM_C SINE Alu -3 130 1 1825 171 10 3 chr13 3189150 3189454 -98683715 - AluJo SINE Alu -6 306 1 29 47 0 0 chr13 3189455 3189498 -98683671 + AT_rich Low_complexity Low_complexity 1 43 0 1213 298 59 17 chr13 3189854 3190449 -98682720 + L1MEc LINE L1 31 650 -5746 2424 166 104 139 chr13 3190471 3190820 -98682349 + L1MC3 LINE L1 6757 7117 -668 259 209 15 15 chr13 3190820 3190887 -98682282 + MLT1F1 LTR MaLR 42 108 -459 2424 166 104 139 chr13 3190887 3191529 -98681640 + L1MC3 LINE L1 7117 7777 -8 238 301 21 11 chr13 3192091 3192184 -98680985 - MIR SINE MIR -149 113 20 23 0 0 0 chr13 3193469 3193492 -98679677 + AT_rich Low_complexity Low_complexity 1 23 0 2206 127 0 0 chr13 3194255 3194555 -98678614 + AluSx SINE Alu 1 300 -12 502 309 85 5 chr13 3194582 3194770 -98678399 - MIR SINE MIR -31 231 29 3309 174 28 38 chr13 3194849 3195611 -98677558 - L1MB8 LINE L1 -51 6127 5374 3430 158 64 97 chr13 3195963 3196887 -98676282 - MER21A LTR ERV1 -26 905 13 202 182 0 0 chr13 3196888 3196921 -98676248 + (TG)n Simple_repeat Simple_repeat 2 34 0 772 191 19 43 chr13 3196955 3197165 -98676004 - L1MC5 LINE L1 -498 7463 7259 21 0 0 0 chr13 3197222 3197243 -98675926 + AT_rich Low_complexity Low_complexity 1 21 0 230 143 24 0 chr13 3197274 3197316 -98675853 - L1MC5 LINE L1 -737 7224 7182 2245 120 3 0 chr13 3197431 3197731 -98675438 - AluSx SINE Alu -11 301 1 239 341 71 32 chr13 3197792 3197918 -98675251 + L2 LINE L2 3142 3272 0 1908 166 3 16 chr13 3198629 3198942 -98674227 + AluJb SINE Alu 1 309 -3 784 105 26 20 chr13 3198945 3199098 -98674071 + GA-rich Low_complexity Low_complexity 3 156 0 212 204 91 0 chr13 3200088 3200132 -98673037 - L2 LINE L2 -3 3310 3263 2152 145 75 91 chr13 3200208 3200339 -98672830 - Charlie1 DNA MER1_type -19 2742 2610 1564 184 3 51 chr13 3200339 3200468 -98672701 + AluJo SINE Alu 1 135 -177 2202 90 3 17 chr13 3200468 3200767 -98672402 - AluY SINE Alu -16 295 1 1564 184 3 51 chr13 3200767 3200952 -98672217 + AluJo SINE Alu 135 300 -12 2152 145 75 91 chr13 3200952 3201435 -98671734 - Charlie1 DNA MER1_type -151 2610 2138 425 244 9 26 chr13 3202024 3202139 -98671030 + MIR SINE MIR 148 260 -2 22 0 0 0 chr13 3202414 3202436 -98670733 + AT_rich Low_complexity Low_complexity 1 22 0 231 105 105 0 chr13 3202722 3202760 -98670409 + L2 LINE L2 2608 2649 -665 464 254 98 40 chr13 3202964 3203137 -98670032 - MIR SINE MIR -70 192 10 2162 129 10 3 chr13 3203398 3203701 -98669468 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr13 3203701 3203741 -98669428 + AT_rich Low_complexity Low_complexity 1 40 0 188 316 18 0 chr13 3204088 3204145 -98669024 + MIR SINE MIR 203 260 -2 2382 74 0 7 chr13 3204432 3204729 -98668440 + AluY SINE Alu 1 295 -16 225 328 25 59 chr13 3206476 3206595 -98666574 + L2 LINE L2 2729 2843 -471 2393 96 0 6 chr13 3206598 3206912 -98666257 - AluSx SINE Alu 0 312 1 193 373 0 15 chr13 3207174 3207241 -98665928 + L2 LINE L2 3121 3186 -86 528 221 81 15 chr13 3207250 3207386 -98665783 - MIR SINE MIR -86 176 32 2278 115 0 3 chr13 3207556 3207861 -98665308 + AluSx SINE Alu 1 304 -8 187 161 0 0 chr13 3207882 3207913 -98665256 + L2 LINE L2 3028 3058 -255 2312 110 0 3 chr13 3208216 3208525 -98664644 - AluSg SINE Alu -2 308 1 757 231 53 36 chr13 3208729 3209032 -98664137 + L1MC4a LINE L1 5701 6017 -104 247 245 187 32 chr13 3209135 3209290 -98663879 + HAL1 LINE L1 2325 2503 -4 23 0 0 0 chr13 3209294 3209317 -98663852 + AT_rich Low_complexity Low_complexity 1 23 0 2123 130 0 13 chr13 3209317 3209632 -98663537 - AluSx SINE Alu -1 311 1 407 211 39 109 chr13 3210152 3210206 -98662963 + L2 LINE L2 3191 3247 -66 2543 53 0 0 chr13 3210206 3210510 -98662659 - AluY SINE Alu -7 304 1 407 211 39 109 chr13 3210510 3210583 -98662586 + L2 LINE L2 3247 3309 -4 247 254 97 53 chr13 3210592 3210706 -98662463 + MIR SINE MIR 96 214 -48 233 238 56 3 chr13 3210886 3211005 -98662164 - L1M LINE L1 -919 5384 5255 2067 138 3 0 chr13 3211008 3211313 -98661856 - AluJb SINE Alu -6 306 1 734 146 0 0 chr13 3211349 3211459 -98661710 - AluSq SINE Alu -13 300 191 929 99 0 0 chr13 3211459 3211580 -98661589 - AluSq SINE Alu -191 121 1 547 254 53 5 chr13 3211588 3211777 -98661392 + L1M4 LINE L1 5086 5283 -863 2214 149 0 0 chr13 3211834 3212142 -98661027 - AluSx SINE Alu -4 308 1 1480 198 37 13 chr13 3212403 3212896 -98660273 - MER74A LTR ERVL 0 558 7 2428 64 3 26 chr13 3212897 3213209 -98659960 + AluSc SINE Alu 5 309 0 236 299 83 49 chr13 3213231 3213327 -98659842 - MIR SINE MIR -103 159 55 2422 89 0 0 chr13 3213327 3213630 -98659539 + AluY SINE Alu 1 303 -8 236 299 83 49 chr13 3213630 3213677 -98659492 - MIR SINE MIR -207 55 11 24 32 0 0 chr13 3213701 3213732 -98659437 + AT_rich Low_complexity Low_complexity 1 31 0 239 353 15 0 chr13 3213878 3213946 -98659223 - MER91A DNA MER1_type -115 81 13 803 264 204 10 chr13 3214116 3214762 -98658407 - L2 LINE L2 -1 3312 2522 574 100 11 11 chr13 3214841 3214931 -98658238 + AluJ/FLAM SINE Alu 1 90 -222 2024 77 19 0 chr13 3214963 3215222 -98657947 - AluSx SINE Alu 0 312 49 1944 100 12 0 chr13 3215222 3215472 -98657697 - AluSx SINE Alu -58 254 1 216 97 0 0 chr13 3215488 3215519 -98657650 + (A)n Simple_repeat Simple_repeat 1 31 0 767 182 8 8 chr13 3216464 3216596 -98656573 - FLAM_A SINE Alu -1 132 1 557 172 49 8 chr13 3217090 3217212 -98655957 + FLAM_A SINE Alu 10 136 -6 22 0 0 0 chr13 3217353 3217375 -98655794 + AT_rich Low_complexity Low_complexity 1 22 0 496 129 0 9 chr13 3217426 3217644 -98655525 + AluJb SINE Alu 1 295 -17 1726 188 7 0 chr13 3217771 3218075 -98655094 - AluJo SINE Alu -6 306 1 768 270 95 18 chr13 3218086 3218412 -98654757 - Tigger8 DNA MER2_type -207 459 109 418 248 83 110 chr13 3218843 3219061 -98654108 + MER102a DNA MER1_type 106 317 -13 525 253 55 93 chr13 3219105 3219362 -98653807 + MER112 DNA MER1_type 8 254 -6 523 368 98 34 chr13 3219701 3220495 -98652674 + L2 LINE L2 951 1795 -1519 272 291 64 27 chr13 3220636 3220746 -98652423 + L2 LINE L2 3191 3304 -9 25 0 0 0 chr13 3220930 3220955 -98652214 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr13 3221313 3221363 -98651806 + AT_rich Low_complexity Low_complexity 1 50 0 635 286 134 6 chr13 3221767 3221844 -98651325 - L1MEc LINE L1 -4700 1714 1648 2001 134 0 0 chr13 3221844 3222143 -98651026 + AluSx SINE Alu 1 299 -13 635 286 134 6 chr13 3222143 3222564 -98650605 - L1MEc LINE L1 -4766 1648 1128 1195 267 71 72 chr13 3222659 3223248 -98649921 - L1MEc LINE L1 -4766 1630 1041 1947 141 0 0 chr13 3223248 3223546 -98649623 - AluSx SINE Alu -14 298 1 1195 267 71 72 chr13 3223546 3223814 -98649355 - L1MEc LINE L1 -5355 1041 774 259 224 20 0 chr13 3223824 3223873 -98649296 - AluJ/monomer SINE Alu -253 50 1 365 323 132 44 chr13 3223874 3224212 -98648957 - L1MEc LINE L1 -5711 685 283 2083 99 0 53 chr13 3224212 3224535 -98648634 - AluSx SINE Alu -6 306 1 365 323 132 44 chr13 3224535 3224719 -98648450 - L1MEc LINE L1 -6113 283 117 509 252 0 41 chr13 3224844 3224967 -98648202 + L2 LINE L2 3192 3309 -4 2426 112 25 6 chr13 3225173 3225529 -98647640 - THE1B LTR MaLR -1 363 1 3409 176 13 25 chr13 3225721 3226037 -98647132 + L1MB3 LINE L1 5511 5829 -354 2258 68 3 3 chr13 3226037 3226352 -98646817 + AluY SINE Alu 1 311 0 3409 176 13 25 chr13 3226352 3226706 -98646463 + L1MB3 LINE L1 5829 6173 -10 2122 100 0 3 chr13 3228328 3228618 -98644551 - AluSq SINE Alu -24 289 1 1128 154 9 23 chr13 3228845 3229065 -98644104 + MER47A DNA MER2_type 1 217 -149 1458 251 129 11 chr13 3229350 3229884 -98643285 + L1PA6 LINE L1 5323 5919 -235 * 4153 121 76 8 chr13 3229489 3230223 -98642946 + L1MA8 LINE L1 5505 6288 -3 198 274 74 42 chr13 3230324 3230419 -98642750 - MIR SINE MIR -52 210 113 409 297 113 5 chr13 3232293 3232488 -98640681 - MIR SINE MIR -23 239 24 323 229 12 169 chr13 3233396 3233562 -98639607 + MIR SINE MIR 117 256 -6 254 202 226 12 chr13 3233571 3233655 -98639514 + MIR SINE MIR 65 166 -96 347 48 0 0 chr13 3233658 3233700 -98639469 - 5S rRNA rRNA -79 42 1 512 314 34 64 chr13 3233805 3234009 -98639160 + MIR SINE MIR 62 259 -3 471 279 53 16 chr13 3234046 3234175 -98638994 - MIR SINE MIR -46 216 74 1653 141 50 7 chr13 3234175 3234474 -98638695 + AluSx SINE Alu 1 312 0 471 279 53 16 chr13 3234474 3234536 -98638633 - MIR SINE MIR -188 74 16 1026 173 10 19 chr13 3235321 3235529 -98637640 + AluJo SINE Alu 1 206 -106 1546 250 65 34 chr13 3235844 3236409 -98636760 - MLT1L LTR MaLR 0 615 33 293 266 237 7 chr13 3236812 3236949 -98636220 + MIR SINE MIR 14 176 -63 354 234 139 63 chr13 3236982 3237140 -98636029 - MLT1J2 LTR MaLR -18 432 263 250 188 187 0 chr13 3237237 3237310 -98635859 - MLT1J1 LTR MaLR -365 85 1 393 270 111 16 chr13 3237825 3238014 -98635155 + LTR16C LTR ERVL 285 491 0 1114 259 89 13 chr13 3238750 3239066 -98634103 + LTR16A LTR ERVL 111 450 0 441 271 170 37 chr13 3239359 3239577 -98633592 + L2 LINE L2 2458 2704 -610 371 357 51 5 chr13 3240136 3240332 -98632837 + L2 LINE L2 3106 3310 -3 363 319 28 14 chr13 3240894 3241038 -98632131 - MIR3 SINE MIR -30 178 33 1112 262 95 11 chr13 3242981 3243328 -98629841 + MLT1J LTR MaLR 1 376 -135 180 49 98 0 chr13 3243369 3243410 -98629759 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1698 111 111 0 chr13 3243439 3243701 -98629468 - MLT2D LTR ERVL -48 366 76 233 276 64 83 chr13 3243563 3243719 -98629450 - MLT1J2 LTR MaLR -399 225 73 * 327 321 170 51 chr13 3243719 3244171 -98628998 - L2 LINE L2 -573 2741 2236 268 261 43 22 chr13 3244565 3244657 -98628512 - L2 LINE L2 -955 2359 2266 391 292 28 14 chr13 3245290 3245434 -98627735 + MIR SINE MIR 109 254 -8 218 171 0 0 chr13 3246211 3246246 -98626923 + (ATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr13 3246329 3246351 -98626818 + (TC)n Simple_repeat Simple_repeat 2 23 0 521 299 51 42 chr13 3246351 3246568 -98626601 - MIR SINE MIR -28 234 16 1590 123 7 45 chr13 3247529 3247821 -98625348 - L1MB3 LINE L1 -9 6174 5894 3210 157 16 53 chr13 3250496 3251141 -98622028 - L1MB3 LINE L1 -279 5904 5284 210 292 62 0 chr13 3251183 3251248 -98621921 - MIR SINE MIR -117 145 77 861 27 0 18 chr13 3251305 3251415 -98621754 - L1PA4 LINE L1 -3 6152 6045 6235 166 53 11 chr13 3251670 3252279 -98620890 + L1MA9 LINE L1 4022 4604 -1708 1963 141 7 0 chr13 3252279 3252584 -98620585 + AluSx SINE Alu 1 307 -5 6235 166 53 11 chr13 3252584 3254110 -98619059 + L1MA9 LINE L1 4604 6312 0 2184 162 23 88 chr13 3254138 3254443 -98618726 - MLT1C LTR MaLR 0 467 206 2068 129 0 7 chr13 3254443 3254753 -98618416 - AluSg SINE Alu -2 308 1 2184 162 23 88 chr13 3254753 3254947 -98618222 - MLT1C LTR MaLR -261 206 1 324 0 0 0 chr13 3255002 3255038 -98618131 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr13 3255206 3255228 -98617941 + AT_rich Low_complexity Low_complexity 1 22 0 2209 325 78 39 chr13 3255234 3257798 -98615371 - HERVL LTR ERVL -1465 4189 1469 628 279 32 36 chr13 3259114 3259365 -98613804 + MLT1J2 LTR MaLR 1 250 -200 1710 168 14 0 chr13 3259373 3259665 -98613504 - AluJb SINE Alu -16 296 1 200 327 37 28 chr13 3260807 3260914 -98612255 + MIR SINE MIR 7 114 -148 456 195 163 8 chr13 3260976 3261099 -98612070 - MER5A DNA MER1_type 0 189 48 290 118 97 65 chr13 3262838 3262931 -98610238 - MIR SINE MIR -55 207 112 1452 150 46 107 chr13 3264628 3264994 -98608175 + MER2 DNA MER2_type 1 344 0 986 204 88 19 chr13 3265357 3265617 -98607552 + L1ME1 LINE L1 5864 6141 -25 203 378 16 0 chr13 3265744 3265871 -98607298 + MIR SINE MIR 20 148 -114 517 198 90 9 chr13 3265969 3266080 -98607089 + L2 LINE L2 3191 3310 -3 3955 85 60 21 chr13 3266214 3266383 -98606786 + L1MA2 LINE L1 5660 5821 -483 1897 128 16 16 chr13 3266383 3266687 -98606482 + AluSc SINE Alu 1 304 -5 502 137 53 11 chr13 3266598 3267153 -98606016 + AluSp/q SINE Alu 215 313 0 3955 85 60 21 chr13 3266687 3267138 -98606031 + L1MA2 LINE L1 5821 6304 0 817 136 8 15 chr13 3267350 3267482 -98605687 + FLAM_C SINE Alu 12 142 -1 2469 63 0 7 chr13 3268288 3268587 -98604582 - AluSx SINE Alu -15 297 1 21 36 0 0 chr13 3268587 3268615 -98604554 + AT_rich Low_complexity Low_complexity 1 28 0 224 333 92 0 chr13 3268678 3268765 -98604404 + MIR SINE MIR 168 262 0 392 305 85 17 chr13 3268766 3268943 -98604226 + MIR SINE MIR 74 262 0 412 344 78 9 chr13 3269169 3269387 -98603782 - MIR SINE MIR -10 252 20 24 32 0 0 chr13 3269687 3269718 -98603451 + AT_rich Low_complexity Low_complexity 1 31 0 300 264 55 55 chr13 3270354 3270464 -98602705 - L2 LINE L2 -1 3271 3162 1410 179 71 24 chr13 3271769 3272109 -98601060 + MLT1C-int LTR MaLR 1015 1370 -1 1130 214 178 8 chr13 3272110 3272503 -98600666 + MLT1C LTR MaLR 1 460 -7 260 301 48 0 chr13 3273459 3273562 -98599607 + Charlie8 DNA MER1_type 35 142 -2275 27 29 0 0 chr13 3273914 3273948 -98599221 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 3273991 3274022 -98599147 + AT_rich Low_complexity Low_complexity 1 31 0 1994 168 7 3 chr13 3274749 3275058 -98598111 + AluSx SINE Alu 1 310 -2 1516 185 4 0 chr13 3275508 3275784 -98597385 + L1PB4 LINE L1 5868 6144 -12 363 298 79 0 chr13 3276872 3276986 -98596183 + L2 LINE L2 3190 3312 -1 1490 74 32 9 chr13 3277949 3278165 -98595004 + HUERS-P1 LTR ERV1 6043 6263 0 2095 56 70 0 chr13 3278165 3278452 -98594717 + LTR8 LTR ERV1 1 307 -384 658 115 0 0 chr13 3280116 3280220 -98592949 - MLT2B3 LTR ERVL -450 104 1 1030 168 25 20 chr13 3280269 3280466 -98592703 + AluJo SINE Alu 90 287 -25 1608 235 18 0 chr13 3280469 3280916 -98592253 + L1M4 LINE L1 4395 4849 -1297 1744 171 3 3 chr13 3280916 3281208 -98591961 - AluJo SINE Alu -20 292 1 1853 177 3 16 chr13 3281229 3281545 -98591624 - AluJb SINE Alu 0 312 1 389 271 25 0 chr13 3281545 3281667 -98591502 - L1M4 LINE L1 -1763 4383 4259 21 36 0 0 chr13 3283056 3283084 -98590085 + AT_rich Low_complexity Low_complexity 1 28 0 1170 187 5 0 chr13 3283084 3283298 -98589871 + Tigger2 DNA MER2_type 349 563 -2155 3503 120 31 55 chr13 3283309 3283984 -98589185 - L1MA3 LINE L1 -6 6299 5641 5545 151 19 34 chr13 3284165 3285674 -98587495 - L1MA3 LINE L1 -669 5636 4126 763 204 91 0 chr13 3285676 3285862 -98587307 + Tigger2 DNA MER2_type 555 757 -1961 1275 130 84 0 chr13 3285916 3286154 -98587015 + Tigger2 DNA MER2_type 2451 2708 -10 3098 256 66 49 chr13 3286163 3286741 -98586428 + L1MC4 LINE L1 6547 7114 -928 1722 179 0 10 chr13 3286741 3287032 -98586137 + AluJb SINE Alu 1 288 -24 3098 256 66 49 chr13 3287032 3287909 -98585260 + L1MC4 LINE L1 7114 8027 -15 1669 245 68 10 chr13 3287952 3288642 -98584527 + L1MC4 LINE L1 7012 7893 -149 318 67 0 0 chr13 3288709 3288754 -98584415 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 10688 42 10 1 chr13 3289163 3291254 -98581915 + L1PA4 LINE L1 4055 6150 -5 21 36 0 0 chr13 3291479 3291507 -98581662 + AT_rich Low_complexity Low_complexity 1 28 0 1592 188 65 0 chr13 3291905 3292197 -98580972 + AluJo SINE Alu 1 311 -1 356 167 0 13 chr13 3292213 3292291 -98580878 + HAL1 LINE L1 2129 2205 -302 321 222 161 61 chr13 3292316 3292496 -98580673 + HAL1 LINE L1 2309 2506 -1 710 281 134 15 chr13 3292519 3293104 -98580065 + L1MC4a LINE L1 5209 5492 -670 189 94 0 0 chr13 3293104 3293136 -98580033 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 710 281 134 15 chr13 3293136 3293173 -98579996 + L1MC4a LINE L1 5492 5523 -639 26 30 0 0 chr13 3293339 3293372 -98579797 + AT_rich Low_complexity Low_complexity 1 33 0 5705 128 18 0 chr13 3294043 3294231 -98578938 + L1PA15 LINE L1 4928 5111 -1054 1978 121 10 13 chr13 3294231 3294529 -98578640 + AluSq SINE Alu 1 297 -16 5705 128 18 0 chr13 3294529 3295574 -98577595 + L1PA15 LINE L1 5111 6165 0 377 129 194 0 chr13 3295669 3295762 -98577407 - L1M LINE L1 -916 5428 5318 2225 105 3 16 chr13 3295772 3296076 -98577093 - AluSx SINE Alu -2 310 11 1970 155 7 0 chr13 3296087 3296384 -98576785 - AluSx SINE Alu -13 299 1 564 209 24 67 chr13 3296388 3296438 -98576731 - L1M4 LINE L1 -816 5330 5279 2314 103 0 0 chr13 3296438 3296756 -98576413 - AluSq SINE Alu 0 313 1 564 209 24 67 chr13 3296756 3296844 -98576325 - L1M4 LINE L1 -867 5279 5189 2243 86 14 0 chr13 3296844 3297185 -98575984 - AluSp SINE Alu 0 346 2 564 209 24 67 chr13 3297185 3297297 -98575872 - L1M4 LINE L1 -957 5189 5089 335 259 0 86 chr13 3298439 3298555 -98574614 - MIR SINE MIR -70 192 87 1042 133 24 30 chr13 3298626 3298825 -98574344 - AluSg/x SINE Alu 0 312 133 353 259 12 0 chr13 3298943 3299028 -98574141 - MIR SINE MIR -121 141 56 2158 122 14 0 chr13 3299175 3299471 -98573698 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr13 3299546 3299568 -98573601 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 3300734 3300757 -98572412 + AT_rich Low_complexity Low_complexity 1 23 0 280 250 125 11 chr13 3301015 3301103 -98572066 - MIR SINE MIR -16 246 149 2230 224 48 21 chr13 3301203 3301656 -98571513 + L1ME2 LINE L1 5536 6173 -161 297 0 0 0 chr13 3301656 3301689 -98571480 + (TG)n Simple_repeat Simple_repeat 2 34 0 2230 224 48 21 chr13 3301689 3301856 -98571313 + L1ME2 LINE L1 6173 6334 0 2474 81 0 0 chr13 3301985 3302295 -98570874 + AluY SINE Alu 1 310 -1 22 0 0 0 chr13 3302295 3302317 -98570852 + AT_rich Low_complexity Low_complexity 1 22 0 386 280 74 16 chr13 3302355 3302544 -98570625 - L1ME LINE L1 -307 5814 5615 318 277 152 0 chr13 3302970 3303082 -98570087 - MIR SINE MIR -10 252 124 219 326 0 35 chr13 3303261 3303347 -98569822 - L2 LINE L2 0 3272 3190 2206 100 7 0 chr13 3303685 3304029 -98569140 - AluSq SINE Alu 0 346 1 1306 219 4 0 chr13 3304460 3304706 -98568463 - AluJo SINE Alu -27 285 39 197 321 19 0 chr13 3304996 3305049 -98568120 + L2 LINE L2 3138 3191 -81 2013 182 68 0 chr13 3305224 3305609 -98567560 + LTR57 LTR ERVL 1 411 0 25 0 0 0 chr13 3309334 3309359 -98563810 + GC_rich Low_complexity Low_complexity 1 25 0 693 229 156 29 chr13 3310436 3310641 -98562528 + MIR SINE MIR 11 241 -21 1904 106 0 109 chr13 3310841 3311180 -98561989 - AluSc SINE Alu -5 304 3 22 35 0 0 chr13 3311457 3311486 -98561683 + AT_rich Low_complexity Low_complexity 1 29 0 2488 87 0 0 chr13 3311615 3311925 -98561244 + AluSg SINE Alu 1 310 0 187 93 186 0 chr13 3312149 3312192 -98560977 + MIR SINE MIR 116 166 -96 225 229 0 0 chr13 3312714 3312762 -98560407 - L2 LINE L2 -2 3270 3223 468 299 34 0 chr13 3313387 3313534 -98559635 - MIR SINE MIR -42 220 69 718 221 126 26 chr13 3314548 3314738 -98558431 - MIR SINE MIR -18 244 36 255 31 0 0 chr13 3315037 3315069 -98558100 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 333 0 0 0 chr13 3315068 3315105 -98558064 + (CA)n Simple_repeat Simple_repeat 1 37 0 221 281 0 18 chr13 3315469 3315526 -98557643 + CT-rich Low_complexity Low_complexity 1 56 0 2772 131 25 18 chr13 3316148 3316660 -98556509 - L1MA9 LINE L1 -22 6290 5775 231 198 31 42 chr13 3316664 3316760 -98556409 + (CATATA)n Simple_repeat Simple_repeat 3 97 0 1258 167 27 0 chr13 3316760 3316982 -98556187 - L1MA9 LINE L1 -524 5788 5561 * 3562 156 53 3 chr13 3316977 3317618 -98555551 - L1MA9 LINE L1 -1777 4369 3697 8010 33 0 1 chr13 3317620 3319145 -98554024 + L1PA4 LINE L1 4629 6152 -3 226 289 48 0 chr13 3319237 3319320 -98553849 + L1ME LINE L1 5807 5893 -228 * 708 226 6 24 chr13 3319312 3319480 -98553689 - L1MA9 LINE L1 -2433 3713 3549 383 285 7 35 chr13 3319767 3319911 -98553258 + MIR SINE MIR 67 206 -56 422 209 146 0 chr13 3320262 3320372 -98552797 - MER103 DNA DNA -38 128 3 494 250 196 0 chr13 3320436 3320584 -98552585 + MIR SINE MIR 25 201 -61 362 245 229 42 chr13 3321829 3322021 -98551148 + MIR SINE MIR 14 241 -21 611 278 52 32 chr13 3322551 3322803 -98550366 + MIR SINE MIR 5 261 -1 183 279 16 16 chr13 3322962 3323023 -98550146 - MER5B DNA MER1_type -36 142 82 2383 86 3 0 chr13 3323696 3323998 -98549171 + AluY SINE Alu 1 303 -8 21 36 0 0 chr13 3324789 3324817 -98548352 + AT_rich Low_complexity Low_complexity 1 28 0 218 116 93 0 chr13 3324897 3324940 -98548229 + L2 LINE L2 3267 3313 0 2024 157 3 3 chr13 3325062 3325374 -98547795 + AluJb SINE Alu 1 312 0 305 242 45 0 chr13 3326825 3326891 -98546278 - MLT1G1 LTR MaLR -12 578 510 854 241 82 53 chr13 3326929 3327269 -98545900 - MLT1G1 LTR MaLR -232 363 14 25 0 0 0 chr13 3327681 3327706 -98545463 + AT_rich Low_complexity Low_complexity 1 25 0 1498 175 7 52 chr13 3327881 3328190 -98544979 + AluJo SINE Alu 1 295 -17 631 263 65 11 chr13 3328742 3328928 -98544241 - MIR SINE MIR -6 256 61 459 312 201 26 chr13 3329206 3329594 -98543575 + L1ME4a LINE L1 5355 5813 -357 265 247 84 48 chr13 3329895 3330061 -98543108 + L1ME4a LINE L1 5939 6110 -11 2474 133 80 15 chr13 3331395 3331795 -98541374 - MSTA LTR MaLR -2 426 1 352 258 98 8 chr13 3332018 3332150 -98541019 - MLT1I LTR MaLR 0 409 266 448 191 32 0 chr13 3332666 3332760 -98540409 + MER5A DNA MER1_type 9 105 -84 1455 145 13 4 chr13 3332788 3333016 -98540153 - AluSg/x SINE Alu 0 312 83 427 238 196 7 chr13 3333060 3333203 -98539966 - MER5B DNA MER1_type -3 175 6 2280 91 30 0 chr13 3333728 3334026 -98539143 - AluSg SINE Alu -3 307 1 298 291 119 102 chr13 3338164 3338459 -98534710 - L2 LINE L2 -79 3193 2894 1499 183 4 11 chr13 3339015 3339277 -98533892 - AluJo SINE Alu -24 288 29 239 209 30 15 chr13 3339697 3339764 -98533405 + GA-rich Low_complexity Low_complexity 3 70 0 254 306 105 0 chr13 3339846 3339970 -98533199 + MIR SINE MIR 72 208 -54 217 206 95 111 chr13 3340214 3340340 -98532829 + MIR SINE MIR 39 162 -100 252 248 0 25 chr13 3340423 3340544 -98532625 + (TTA)n Simple_repeat Simple_repeat 1 118 0 212 250 18 0 chr13 3341102 3341158 -98532011 + GA-rich Low_complexity Low_complexity 1 57 0 298 353 45 6 chr13 3341973 3342129 -98531040 - L1ME LINE L1 -487 5634 5473 1926 107 11 4 chr13 3342262 3342534 -98530635 + AluSg SINE Alu 37 310 0 262 248 57 133 chr13 3342804 3343014 -98530155 + MLT1L LTR MaLR 200 393 -222 3585 211 91 49 chr13 3343023 3344625 -98528544 - L1MDa LINE L1 -4642 1898 2 1667 214 112 28 chr13 3344618 3344764 -98528405 - L1ME LINE L1 -350 5816 5684 * 2359 113 17 14 chr13 3344764 3345118 -98528051 - THE1A LTR MaLR 0 355 1 1667 214 112 28 chr13 3345118 3345753 -98527416 - L1ME LINE L1 -482 5684 4981 1919 142 3 23 chr13 3345813 3345979 -98527190 - AluSx SINE Alu -12 300 141 2237 94 0 10 chr13 3345979 3346277 -98526892 - AluY SINE Alu -14 297 3 1919 142 3 23 chr13 3346277 3346412 -98526757 - AluSx SINE Alu -171 141 5 1304 231 40 20 chr13 3346417 3346768 -98526401 - L1ME LINE L1 -1142 5004 4647 725 189 0 0 chr13 3346777 3346888 -98526281 - FLAM_A SINE Alu -12 130 20 2351 75 0 0 chr13 3346983 3347263 -98525906 + AluY SINE Alu 1 280 -31 945 216 165 27 chr13 3347357 3347732 -98525437 - L1ME LINE L1 -1540 4606 4180 282 73 0 0 chr13 3347735 3347776 -98525393 + (TG)n Simple_repeat Simple_repeat 1 41 0 353 287 25 16 chr13 3347796 3347918 -98525251 - L1MC4a LINE L1 -1210 6598 6476 1271 282 59 27 chr13 3348386 3348908 -98524261 - L1MC4a LINE L1 -342 5822 5301 1705 206 71 22 chr13 3349007 3349459 -98523710 + L1MC4 LINE L1 6821 7294 -748 440 300 123 0 chr13 3349466 3349636 -98523533 - LTR16A LTR ERVL -5 445 255 1821 180 137 98 chr13 3349813 3349957 -98523212 + L1MC4 LINE L1 7299 7436 -606 14821 119 24 74 chr13 3349957 3351343 -98521826 + Tigger1 DNA MER2_type 2 1206 -1212 2443 71 0 0 chr13 3351343 3351637 -98521532 - AluY SINE Alu -16 295 2 14821 119 24 74 chr13 3351637 3352793 -98520376 + Tigger1 DNA MER2_type 1206 2418 0 1821 180 137 98 chr13 3352793 3352865 -98520304 + L1MC4 LINE L1 7436 7504 -538 1688 163 0 0 chr13 3352865 3353123 -98520046 + AluJo SINE Alu 1 258 -54 1821 180 137 98 chr13 3353123 3353167 -98520002 + L1MC4 LINE L1 7504 7545 -497 219 69 0 0 chr13 3353167 3353196 -98519973 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1821 180 137 98 chr13 3353196 3353434 -98519735 + L1MC4 LINE L1 7545 7772 -270 2229 123 0 0 chr13 3353434 3353744 -98519425 + AluSx SINE Alu 3 312 0 1821 180 137 98 chr13 3353744 3353958 -98519211 + L1MC4 LINE L1 7772 8042 0 2187 110 3 7 chr13 3353978 3354277 -98518892 + AluSx SINE Alu 4 301 -11 180 0 0 0 chr13 3354277 3354297 -98518872 + (TG)n Simple_repeat Simple_repeat 2 21 0 504 283 86 74 chr13 3354465 3354554 -98518615 - L1MC4a LINE L1 -1313 4833 4746 563 133 36 0 chr13 3354554 3354637 -98518532 - L1MC1 LINE L1 -9 6324 6239 504 283 86 74 chr13 3354637 3355025 -98518144 - L1MC4a LINE L1 -1400 4746 4364 2317 68 3 56 chr13 3355025 3355349 -98517820 - AluY SINE Alu -4 307 1 504 283 86 74 chr13 3355349 3355841 -98517328 - L1MC4a LINE L1 -1782 4364 3852 2350 107 0 0 chr13 3356120 3356420 -98516749 + AluSx SINE Alu 1 300 -12 183 311 98 30 chr13 3357265 3357397 -98515772 + MIR SINE MIR 120 260 -2 2005 121 25 0 chr13 3357528 3357810 -98515359 + AluSx SINE Alu 1 289 -23 211 247 26 26 chr13 3358406 3358421 -98514748 + (TA)n Simple_repeat Simple_repeat 1 15 -62 1820 167 0 3 chr13 3358421 3358708 -98514461 + AluJo SINE Alu 1 286 -26 211 247 26 26 chr13 3358708 3358769 -98514400 + (TA)n Simple_repeat Simple_repeat 14 77 0 24 0 0 0 chr13 3358859 3358883 -98514286 + AT_rich Low_complexity Low_complexity 1 24 0 247 367 83 35 chr13 3358891 3359120 -98514049 + MIR SINE MIR 9 248 -14 1101 235 202 19 chr13 3359331 3359928 -98513241 - L2 LINE L2 0 3313 2620 254 175 35 0 chr13 3359942 3359999 -98513170 - L1ME4a LINE L1 -81 6040 5982 26 0 0 0 chr13 3360217 3360243 -98512926 + AT_rich Low_complexity Low_complexity 1 26 0 524 314 53 19 chr13 3360525 3360789 -98512380 - L2 LINE L2 -453 2861 2589 216 0 0 0 chr13 3360924 3360948 -98512221 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 6221 66 37 51 chr13 3361094 3362870 -98510299 + SVA Other Other 207 1385 -1 968 243 148 29 chr13 3362885 3363264 -98509905 - MLT1H LTR MaLR -53 496 73 2093 106 46 0 chr13 3363282 3363564 -98509605 - AluSx SINE Alu -15 297 3 535 260 264 21 chr13 3363597 3363885 -98509284 - L2 LINE L2 -691 2623 2266 1921 149 17 14 chr13 3364392 3364688 -98508481 - AluJo SINE Alu -15 297 1 443 122 28 84 chr13 3365260 3365342 -98507827 + L1MB7 LINE L1 5824 5900 -284 2169 121 0 13 chr13 3365342 3365648 -98507521 + AluSq SINE Alu 1 302 -11 443 122 28 84 chr13 3365648 3365672 -98507497 + L1MB7 LINE L1 5900 5924 -260 337 82 41 0 chr13 3365704 3365753 -98507416 - U6 snRNA snRNA -50 57 7 899 250 49 0 chr13 3365754 3366018 -98507151 + L1MB7 LINE L1 5908 6184 0 * 2683 185 92 112 chr13 3366006 3367371 -98505798 + L1MEc LINE L1 1619 3010 -3205 621 189 18 9 chr13 3367371 3367482 -98505687 + AluSg/x SINE Alu 187 298 -11 1266 203 117 4 chr13 3367485 3367681 -98505488 - AluJo SINE Alu -6 296 61 2108 139 0 0 chr13 3367681 3367990 -98505179 + AluSx SINE Alu 4 312 0 1266 203 117 4 chr13 3367990 3368059 -98505110 - AluJo SINE Alu -241 61 1 2683 185 92 112 chr13 3368059 3368333 -98504836 + L1MEc LINE L1 3012 3296 -2919 2357 64 3 0 chr13 3368536 3368853 -98504316 - AluY SINE Alu 0 318 1 239 313 62 12 chr13 3368860 3368940 -98504229 + MIR3 SINE MIR 110 193 -15 360 0 0 0 chr13 3369268 3369308 -98503861 + (TG)n Simple_repeat Simple_repeat 2 41 0 527 257 0 0 chr13 3369542 3369647 -98503522 + MIR SINE MIR 6 110 -152 2227 96 0 14 chr13 3369758 3370051 -98503118 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr13 3372644 3372666 -98500503 + GC_rich Low_complexity Low_complexity 1 22 0 250 217 22 33 chr13 3372964 3373056 -98500113 + C-rich Low_complexity Low_complexity 6 96 0 1523 148 13 45 chr13 3373825 3374135 -98499034 - AluJb SINE Alu -12 300 1 553 198 54 9 chr13 3374578 3374689 -98498480 - MLT1C LTR MaLR -3 464 349 1703 115 23 4 chr13 3374695 3374955 -98498214 + MSTB LTR MaLR 2 266 -160 1018 142 32 0 chr13 3375179 3375334 -98497835 + MSTB LTR MaLR 267 426 0 622 226 13 27 chr13 3375339 3375588 -98497581 - MLT1C LTR MaLR -122 345 68 1912 149 3 3 chr13 3375588 3375889 -98497280 - AluSx SINE Alu -11 301 1 1391 99 0 5 chr13 3376102 3376293 -98496876 - AluSc SINE Alu -1 308 119 720 292 10 5 chr13 3376590 3376792 -98496377 - L2 LINE L2 -559 2755 2553 1916 119 7 46 chr13 3376804 3377106 -98496063 + AluSg SINE Alu 1 290 -20 2379 97 0 0 chr13 3377809 3378119 -98495050 + AluSg SINE Alu 1 310 0 2069 107 42 3 chr13 3378361 3378650 -98494519 + AluSx SINE Alu 1 300 -12 298 230 239 0 chr13 3378679 3378792 -98494377 + MER34 LTR ERV1 1 140 -402 * 1040 222 198 16 chr13 3378760 3379129 -98494040 + MER39 LTR ERV1 272 707 0 3409 144 26 42 chr13 3379898 3380523 -98492646 + MER49 LTR ERV1 9 623 -300 253 146 24 0 chr13 3380524 3380565 -98492604 + 5S rRNA rRNA 1 42 -79 * 1184 254 17 17 chr13 3380564 3380863 -98492306 + MER49 LTR ERV1 611 909 -14 1173 105 23 0 chr13 3380873 3381044 -98492125 - L1MA3 LINE L1 -1 6304 6130 1199 111 17 22 chr13 3381044 3381213 -98491956 - AluSg/x SINE Alu -22 288 119 574 148 0 0 chr13 3381213 3381294 -98491875 - AluJ/FRAM SINE Alu -11 301 221 6158 199 41 32 chr13 3381294 3381691 -98491478 - L1 LINE L1 -1761 5804 5412 1870 174 0 7 chr13 3381691 3381995 -98491174 - AluJb SINE Alu -10 302 1 6158 199 41 32 chr13 3381995 3382207 -98490962 - L1 LINE L1 -2153 5412 5204 2095 114 14 0 chr13 3382207 3382497 -98490672 - AluSq SINE Alu -19 294 1 6158 199 41 32 chr13 3382497 3383397 -98489772 - L1 LINE L1 -2361 5204 4314 2255 91 11 0 chr13 3383397 3383682 -98489487 - AluSp SINE Alu -24 289 2 6158 199 41 32 chr13 3383682 3383906 -98489263 - L1 LINE L1 -3251 4314 4094 2123 134 3 3 chr13 3383906 3384212 -98488957 - AluJb SINE Alu -6 306 1 6158 199 41 32 chr13 3384212 3384779 -98488390 - L1 LINE L1 -3471 4094 3438 857 140 13 7 chr13 3384796 3384946 -98488223 + L1M1 LINE L1 3009 3159 -4406 1133 84 0 39 chr13 3384950 3385105 -98488064 - AluY SINE Alu -162 149 1 16271 122 32 5 chr13 3385105 3387486 -98485683 - L1 LINE L1 -4611 2954 510 1057 139 47 142 chr13 3387509 3387783 -98485386 - L1MD3 LINE L1 -346 7649 7402 445 136 18 146 chr13 3387789 3387857 -98485312 - MLT1F1 LTR MaLR -449 118 68 2103 131 3 0 chr13 3387857 3388154 -98485015 + AluSx SINE Alu 1 298 -14 445 136 18 146 chr13 3388154 3388195 -98484974 - MLT1F1 LTR MaLR -499 68 23 586 195 8 25 chr13 3388196 3388314 -98484855 - L1MD3 LINE L1 -707 7288 7173 2406 67 3 0 chr13 3388490 3388787 -98484382 - AluY SINE Alu -13 298 1 335 307 79 8 chr13 3389259 3389386 -98483783 + L2 LINE L2 3178 3313 0 617 267 45 11 chr13 3389623 3389799 -98483370 + MIR SINE MIR 5 186 -76 243 0 0 0 chr13 3389814 3389841 -98483328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1766 121 25 32 chr13 3389845 3390125 -98483044 - AluSx SINE Alu -33 279 2 303 282 23 8 chr13 3390134 3390265 -98482904 + (TA)n Simple_repeat Simple_repeat 1 133 0 23 0 0 0 chr13 3390365 3390388 -98482781 + AT_rich Low_complexity Low_complexity 1 23 0 207 151 38 0 chr13 3390654 3390707 -98482462 + A-rich Low_complexity Low_complexity 3 57 0 698 211 121 16 chr13 3390714 3390970 -98482199 - LTR50 LTR ERVL -506 289 7 370 238 76 9 chr13 3390974 3391129 -98482040 - L1MC/D LINE L1 -344 5818 5668 219 260 20 0 chr13 3391304 3391354 -98481815 + L2 LINE L2 3208 3258 -14 2435 70 0 10 chr13 3391646 3391948 -98481221 + AluSg SINE Alu 1 299 -11 1617 141 72 10 chr13 3391959 3392249 -98480920 + AluJo SINE Alu 1 308 -4 2243 112 3 0 chr13 3392249 3392553 -98480616 + AluSx SINE Alu 1 305 -7 487 131 30 0 chr13 3392565 3392664 -98480505 + GA-rich Low_complexity Low_complexity 2 103 0 1839 135 33 30 chr13 3393676 3393979 -98479190 + AluSx SINE Alu 1 304 -8 2447 58 3 10 chr13 3394180 3394489 -98478680 + AluY SINE Alu 1 307 -4 393 241 97 14 chr13 3394788 3394933 -98478236 - L1MC4 LINE L1 -1065 6977 6821 1271 286 102 42 chr13 3395032 3395554 -98477615 + L1MC4a LINE L1 5301 5822 -342 353 287 25 16 chr13 3396022 3396144 -98477025 + L1MC4a LINE L1 6476 6598 -1210 282 73 0 0 chr13 3396164 3396205 -98476964 + (CA)n Simple_repeat Simple_repeat 1 41 0 945 216 165 27 chr13 3396208 3396583 -98476586 + L1M4 LINE L1 4180 4606 -1540 2351 75 0 0 chr13 3396677 3396957 -98476212 - AluY SINE Alu -31 280 1 725 189 0 0 chr13 3397052 3397163 -98476006 + FLAM_A SINE Alu 20 130 -12 1279 234 40 20 chr13 3397172 3397523 -98475646 + L1M4 LINE L1 4647 5004 -1142 959 124 0 0 chr13 3397528 3397657 -98475512 + AluSq/x SINE Alu 5 133 -179 2240 93 3 7 chr13 3397663 3397965 -98475204 + AluY SINE Alu 3 303 -8 344 140 35 0 chr13 3398101 3398158 -98475011 + Alu SINE Alu 244 302 0 2184 98 7 3 chr13 3398186 3398481 -98474688 + AluSg SINE Alu 1 296 -14 217 330 96 52 chr13 3399190 3399535 -98473634 - L2 LINE L2 -1604 1710 1351 1777 142 38 10 chr13 3399772 3400060 -98473109 + AluJb SINE Alu 1 296 -16 244 288 166 31 chr13 3400136 3400299 -98472870 - MIR SINE MIR -22 240 56 272 200 40 0 chr13 3400837 3400887 -98472282 + L2 LINE L2 3183 3234 -38 289 347 21 11 chr13 3400994 3401089 -98472080 - L2 LINE L2 -35 3237 3142 471 209 209 12 chr13 3401253 3401425 -98471744 + MLT1G1 LTR MaLR 1 206 -389 1263 262 18 12 chr13 3401434 3401770 -98471399 + L1M4 LINE L1 4009 4346 -1800 5973 125 55 55 chr13 3402530 3402884 -98470285 - L1MA5A LINE L1 -2 6295 5943 2097 87 35 7 chr13 3402884 3403170 -98469999 - AluSq SINE Alu -19 294 1 5973 125 55 55 chr13 3403170 3403618 -98469551 - L1MA5A LINE L1 -354 5943 5497 1791 176 7 0 chr13 3403618 3403907 -98469262 + AluJo SINE Alu 1 291 -21 5973 125 55 55 chr13 3403907 3404483 -98468686 - L1MA5A LINE L1 -800 5497 4903 1283 81 17 17 chr13 3406611 3406783 -98466386 + AluY SINE Alu 1 172 -139 404 306 100 31 chr13 3407093 3407384 -98465785 - L2 LINE L2 -1120 2194 1884 1383 160 122 34 chr13 3407386 3407628 -98465541 + MER2 DNA MER2_type 1 275 -70 1638 174 31 7 chr13 3407628 3407921 -98465248 - AluJo SINE Alu -12 300 1 1383 160 122 34 chr13 3407921 3407972 -98465197 + MER2 DNA MER2_type 275 320 -25 2329 85 0 31 chr13 3408434 3408752 -98464417 + AluSq SINE Alu 6 313 0 197 402 10 0 chr13 3409214 3409316 -98463853 - L2 LINE L2 -2440 874 772 1597 163 41 37 chr13 3409576 3409870 -98463299 + AluJo SINE Alu 1 295 -17 445 308 123 22 chr13 3410197 3410424 -98462745 + MIR SINE MIR 3 252 -10 281 212 214 3 chr13 3410422 3410504 -98462665 + MIR SINE MIR 18 115 -93 * 1701 187 10 13 chr13 3411702 3412012 -98461157 + AluJo SINE Alu 1 309 -3 795 98 71 0 chr13 3412115 3412227 -98460942 - AluSg/x SINE Alu -16 296 177 2466 61 0 0 chr13 3412588 3412884 -98460285 + AluY SINE Alu 3 298 -13 465 296 192 34 chr13 3413055 3413613 -98459556 + L2 LINE L2 1443 2088 -1226 180 0 0 0 chr13 3415531 3415551 -98457618 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 219 204 102 0 chr13 3416451 3416500 -98456669 + MIR SINE MIR 127 180 -82 469 323 112 50 chr13 3416582 3417084 -98456085 + L2 LINE L2 2036 2568 -746 392 329 44 93 chr13 3417194 3417604 -98455565 + L2 LINE L2 2882 3271 -1 311 191 0 0 chr13 3418317 3418380 -98454789 + U13 snRNA snRNA 14 76 -28 859 214 40 40 chr13 3419675 3419951 -98453218 + L1MC5 LINE L1 7250 7525 -436 1597 164 0 64 chr13 3419955 3420253 -98452916 + AluJb SINE Alu 1 279 -33 342 0 0 0 chr13 3420257 3420295 -98452874 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3673 166 75 39 chr13 3420295 3420718 -98452451 + L1MB3 LINE L1 5143 5549 -634 2675 45 3 0 chr13 3420718 3421027 -98452142 + AluY SINE Alu 1 310 -1 3673 166 75 39 chr13 3421027 3421603 -98451566 + L1MB3 LINE L1 5549 6181 -2 717 213 80 82 chr13 3421608 3422022 -98451147 + L1MC5 LINE L1 7513 7925 -36 309 226 45 60 chr13 3422414 3422547 -98450622 - MLT1K LTR MaLR -317 271 141 1751 156 195 55 chr13 3422889 3423345 -98449824 - MLT2B1 LTR ERVL 0 520 1 262 265 0 15 chr13 3423715 3423783 -98449386 + MIR3 SINE MIR 118 184 -24 1687 185 26 0 chr13 3423880 3424160 -98449009 + L1MD3 LINE L1 7619 7911 -84 1578 138 116 8 chr13 3424160 3424428 -98448741 + AluJb SINE Alu 1 297 -15 1687 185 26 0 chr13 3424428 3424498 -98448671 + L1MD3 LINE L1 7911 7978 -17 871 199 137 26 chr13 3425772 3426361 -98446808 + L1ME1 LINE L1 5507 6148 -18 289 330 99 42 chr13 3426434 3426816 -98446353 - L2 LINE L2 -930 2384 1981 1916 105 72 4 chr13 3426855 3427132 -98446037 + AluSp SINE Alu 5 300 -13 212 341 59 29 chr13 3427177 3427347 -98445822 - L2 LINE L2 -1367 1947 1773 285 146 0 0 chr13 3428394 3428442 -98444727 + (TG)n Simple_repeat Simple_repeat 2 49 0 2011 94 0 14 chr13 3428443 3428719 -98444450 - AluSx SINE Alu -40 272 1 1488 208 83 48 chr13 3429456 3430028 -98443141 + L1ME2 LINE L1 5407 6027 -137 334 277 39 52 chr13 3430090 3430245 -98442924 + L1MC5 LINE L1 7774 7926 -35 2490 54 0 3 chr13 3430831 3431127 -98442042 + AluY SINE Alu 1 295 -16 2256 68 7 31 chr13 3431382 3431676 -98441493 + AluY SINE Alu 9 295 -16 676 153 59 9 chr13 3431978 3432149 -98441020 + Tigger3(Golem) DNA MER2_type 1 2995 -34 358 294 30 96 chr13 3432238 3432435 -98440734 - L1MC4a LINE L1 -1757 6051 5868 2346 87 7 13 chr13 3432449 3432758 -98440411 - AluSx SINE Alu -5 307 1 1250 228 27 54 chr13 3432817 3433225 -98439944 + L1MD1 LINE L1 3995 4391 -1755 2308 193 90 32 chr13 3433241 3433499 -98439670 + L1MD1 LINE L1 4897 5139 -1103 2141 65 0 14 chr13 3433499 3433775 -98439394 + AluY SINE Alu 35 306 -5 2308 193 90 32 chr13 3433775 3434732 -98438437 + L1MD1 LINE L1 5139 6231 -11 30 59 0 0 chr13 3436060 3436111 -98437058 + AT_rich Low_complexity Low_complexity 1 51 0 565 206 201 32 chr13 3436513 3436732 -98436437 - MLT1H LTR MaLR -20 529 274 663 200 145 0 chr13 3436732 3436877 -98436292 - MER58B DNA MER1_type 0 341 176 264 250 60 0 chr13 3436898 3436982 -98436187 + MIR SINE MIR 100 188 -74 258 351 36 40 chr13 3437360 3437582 -98435587 - L2 LINE L2 -208 3064 2844 2360 89 3 0 chr13 3437790 3438092 -98435077 + AluY SINE Alu 1 303 -8 308 179 0 0 chr13 3438229 3438285 -98434884 + Alu SINE Alu 243 298 -2 2159 102 7 3 chr13 3438312 3438607 -98434562 + AluSg SINE Alu 1 296 -14 239 335 96 47 chr13 3439316 3439659 -98433510 - L2 LINE L2 -1604 1710 1351 1780 142 38 10 chr13 3439896 3440184 -98432985 + AluJb SINE Alu 1 296 -16 254 288 166 31 chr13 3440260 3440423 -98432746 - MIR SINE MIR -22 240 56 239 234 0 39 chr13 3440895 3440972 -98432197 + T-rich Low_complexity Low_complexity 2 75 0 589 168 117 51 chr13 3441283 3441480 -98431689 + MER63A DNA MER1_type 1 210 0 290 340 30 11 chr13 3443498 3443763 -98429406 + L1MC/D LINE L1 4080 4349 -1797 297 263 19 58 chr13 3443785 3443941 -98429228 + HAL1b LINE L1 1187 1336 -12 318 304 89 14 chr13 3443980 3444194 -98428975 + L1MC/D LINE L1 4358 4587 -1559 243 287 56 84 chr13 3444201 3444595 -98428574 - MLT1I LTR MaLR -8 401 19 2275 83 0 0 chr13 3444666 3444943 -98428226 + AluY SINE Alu 17 293 -18 412 317 75 40 chr13 3444971 3445288 -98427881 + L1MC/D LINE L1 4733 5079 -1067 1896 127 53 13 chr13 3445493 3445793 -98427376 + AluSx SINE Alu 1 312 0 1377 237 40 21 chr13 3445874 3446250 -98426919 - LTR40a LTR ERVL 0 519 137 1023 98 147 18 chr13 3446267 3446430 -98426739 - AluSg SINE Alu -110 200 17 340 160 40 110 chr13 3446431 3446502 -98426667 - LTR40a LTR ERVL -423 96 32 2293 98 0 3 chr13 3446502 3446799 -98426370 + AluY SINE Alu 1 296 -15 340 160 40 110 chr13 3446799 3446827 -98426342 - LTR40a LTR ERVL -487 32 4 398 222 41 107 chr13 3446838 3446962 -98426207 + L1MC/D LINE L1 5302 5404 -2404 1963 119 4 0 chr13 3446962 3447240 -98425929 + AluSx SINE Alu 1 279 -33 398 222 41 107 chr13 3447240 3447358 -98425811 + L1MC/D LINE L1 5404 5528 -2280 2428 94 7 0 chr13 3447533 3447841 -98425328 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr13 3447997 3448019 -98425150 + AT_rich Low_complexity Low_complexity 1 22 0 1713 168 24 20 chr13 3448156 3448453 -98424716 + AluJo SINE Alu 1 298 -14 1764 172 10 3 chr13 3448480 3448783 -98424386 - AluJo SINE Alu -7 305 1 1823 159 34 0 chr13 3448822 3449117 -98424052 - AluSx SINE Alu -7 305 1 2244 86 0 22 chr13 3449119 3449433 -98423736 - AluY SINE Alu -1 310 4 305 284 80 11 chr13 3449451 3449539 -98423630 + MIR SINE MIR 19 112 -150 286 250 148 56 chr13 3449553 3449661 -98423508 - MIR SINE MIR -139 123 6 823 198 25 1 chr13 3449703 3449898 -98423271 - MLT1A2 LTR MaLR 0 390 190 2189 96 7 0 chr13 3450376 3450657 -98422512 + AluSg SINE Alu 1 283 -27 417 138 0 69 chr13 3451271 3451358 -98421811 + AluJ/FRAM SINE Alu 225 305 -7 772 180 0 14 chr13 3451380 3451519 -98421650 + FLAM_C SINE Alu 1 137 -6 1092 210 98 0 chr13 3453822 3454098 -98419071 + L1MC4 LINE L1 6821 7123 -919 206 300 7 79 chr13 3454545 3454669 -98418500 + L2 LINE L2 2869 2983 -289 2503 65 0 7 chr13 3454669 3454977 -98418192 - AluY SINE Alu -5 306 1 206 300 7 79 chr13 3454977 3454992 -98418177 + L2 LINE L2 2983 2998 -274 260 316 61 10 chr13 3455054 3455152 -98418017 + L2 LINE L2 3169 3271 -1 180 111 0 0 chr13 3455155 3455182 -98417987 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 254 301 96 0 chr13 3455230 3455303 -98417866 - L2 LINE L2 -38 3234 3155 21 82 0 0 chr13 3455333 3455382 -98417787 + AT_rich Low_complexity Low_complexity 1 49 0 372 278 137 50 chr13 3455864 3456227 -98416942 + L2 LINE L2 2260 2654 -660 509 282 57 62 chr13 3456227 3456436 -98416733 + MIR SINE MIR 4 211 -51 333 337 153 12 chr13 3456504 3456753 -98416416 + L2 LINE L2 2687 2970 -344 202 298 76 15 chr13 3456908 3457039 -98416130 + L2 LINE L2 3171 3309 -4 2148 126 0 16 chr13 3457078 3457388 -98415781 + AluSx SINE Alu 1 305 -7 1959 125 36 0 chr13 3457666 3457947 -98415222 + AluSq SINE Alu 1 291 -22 4136 225 121 44 chr13 3457951 3459307 -98413862 + L1M4c LINE L1 11 1525 -4859 2359 83 3 0 chr13 3459307 3459608 -98413561 + AluY SINE Alu 1 302 -9 4136 225 121 44 chr13 3459608 3459945 -98413224 + L1M4c LINE L1 1525 1835 -4549 594 180 109 52 chr13 3459955 3460097 -98413072 + L1M4c LINE L1 3085 3218 -3164 2186 95 14 14 chr13 3460097 3460391 -98412778 - AluSq SINE Alu -19 294 1 594 180 109 52 chr13 3460391 3460515 -98412654 + L1M4c LINE L1 3218 3366 -3016 357 192 0 14 chr13 3460514 3460587 -98412582 + L1MCa LINE L1 262 333 -6093 * 2259 112 3 13 chr13 3460587 3460901 -98412268 + AluSp SINE Alu 1 311 -2 2214 128 0 6 chr13 3460913 3461225 -98411944 + AluSx SINE Alu 3 312 0 441 192 23 0 chr13 3461225 3461355 -98411814 + GA-rich Low_complexity Low_complexity 2 134 0 303 140 18 0 chr13 3461366 3461423 -98411746 + L1MCa LINE L1 2128 2185 -4241 1048 151 22 45 chr13 3461424 3461603 -98411566 + AluJo SINE Alu 108 282 -30 300 180 0 0 chr13 3461643 3461704 -98411465 + L1MCa LINE L1 2171 2231 -4195 383 300 95 5 chr13 3461745 3462011 -98411158 + L2 LINE L2 2768 3049 -264 213 157 0 86 chr13 3462666 3462736 -98410433 + (TA)n Simple_repeat Simple_repeat 1 64 0 282 193 138 28 chr13 3462772 3462917 -98410252 - L1ME LINE L1 -280 5841 5681 2195 232 97 32 chr13 3463865 3464437 -98408732 - L1ME3A LINE L1 -76 6094 5458 2392 84 0 0 chr13 3464437 3464733 -98408436 - AluY SINE Alu -15 296 1 2195 232 97 32 chr13 3464733 3464931 -98408238 - L1ME3A LINE L1 -712 5458 5274 405 298 89 76 chr13 3465811 3466036 -98407133 - L2 LINE L2 -1 3271 3044 585 286 84 0 chr13 3466934 3467112 -98406057 + MIR SINE MIR 64 256 -6 2415 63 0 0 chr13 3467855 3468141 -98405028 + AluY SINE Alu 2 287 -24 185 0 40 0 chr13 3468148 3468173 -98404996 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2278 92 3 3 chr13 3468353 3468648 -98404521 - AluSc SINE Alu -14 295 1 2281 104 0 0 chr13 3468746 3469045 -98404124 + AluSg SINE Alu 1 299 -11 2344 79 7 3 chr13 3469045 3469350 -98403819 + AluY SINE Alu 1 306 -5 1812 176 20 20 chr13 3469578 3469884 -98403285 + AluJb SINE Alu 1 306 -6 255 200 40 0 chr13 3470084 3470134 -98403035 + AluJb SINE Alu 76 127 -175 1685 155 3 59 chr13 3470800 3471122 -98402047 + AluJb SINE Alu 1 304 -8 228 240 147 0 chr13 3471246 3471321 -98401848 - MLT1E LTR MaLR -14 579 494 2026 141 0 0 chr13 3474010 3474308 -98398861 - AluSx SINE Alu -14 298 1 2010 115 3 34 chr13 3474626 3474921 -98398248 + AluSx SINE Alu 2 287 -25 2371 90 0 3 chr13 3477071 3477370 -98395799 + AluSx SINE Alu 1 298 -14 551 260 98 86 chr13 3477592 3478176 -98394993 - MER109 Unknown Unknown -643 1789 29 294 145 81 48 chr13 3478260 3478322 -98394847 - MER2 DNA MER2_type -271 74 11 * 1220 146 66 134 chr13 3478278 3478365 -98394804 + MER2 DNA MER2_type 11 102 -243 1786 153 7 0 chr13 3478365 3478639 -98394530 + AluJb SINE Alu 4 279 -33 1220 146 66 134 chr13 3478639 3478794 -98394375 + MER2 DNA MER2_type 102 224 -121 1938 89 16 104 chr13 3478794 3479110 -98394059 - AluSp SINE Alu -25 288 1 1220 146 66 134 chr13 3479110 3479216 -98393953 + MER2 DNA MER2_type 224 336 -9 598 161 0 0 chr13 3479262 3479349 -98393820 + 5S rRNA rRNA 3 89 -32 1935 155 24 0 chr13 3479583 3479880 -98393289 - AluSq SINE Alu -9 304 1 23 0 0 0 chr13 3479904 3479927 -98393242 + AT_rich Low_complexity Low_complexity 1 23 0 1024 111 0 21 chr13 3479960 3480104 -98393065 - AluJb SINE Alu -171 141 1 642 153 18 9 chr13 3480111 3480222 -98392947 - L1PA16 LINE L1 -22 6144 6033 280 114 0 0 chr13 3480223 3480267 -98392902 - L1PA16 LINE L1 -183 5983 5940 1694 167 31 3 chr13 3480276 3480569 -98392600 - AluJo SINE Alu -11 301 1 366 277 121 14 chr13 3480639 3480780 -98392389 - MER109 Unknown Unknown -1627 805 650 2492 61 0 26 chr13 3481026 3481337 -98391832 - AluY SINE Alu -8 303 1 356 235 70 35 chr13 3481413 3481645 -98391524 - MER109 Unknown Unknown -1139 1293 2 2079 119 36 3 chr13 3481718 3482020 -98391149 - AluSx SINE Alu 0 312 1 1917 149 0 3 chr13 3482096 3482385 -98390784 - AluJb SINE Alu -24 288 1 347 263 50 0 chr13 3482389 3482469 -98390700 + L2 LINE L2 3185 3268 -4 274 274 63 11 chr13 3482498 3482593 -98390576 + HAL1b LINE L1 1193 1292 -56 723 162 6 22 chr13 3482712 3482878 -98390291 - MSTC LTR MaLR -215 150 4 887 254 44 20 chr13 3482880 3483128 -98390041 + L1MDa LINE L1 664 917 -5623 438 259 9 0 chr13 3483689 3483801 -98389368 + MLT2B1 LTR ERVL 1 113 -407 1109 209 45 29 chr13 3483926 3484366 -98388803 + MER74A LTR ERVL 1 545 -13 13878 118 47 8 chr13 3484706 3486505 -98386664 - Tigger1 DNA MER2_type -219 2199 303 204 40 0 0 chr13 3486505 3486530 -98386639 + (GA)n Simple_repeat Simple_repeat 2 26 0 13878 118 47 8 chr13 3486530 3486846 -98386323 - Tigger1 DNA MER2_type -2115 303 1 4426 142 25 0 chr13 3490876 3491566 -98381603 - L1MC1 LINE L1 -5 6328 5622 425 263 53 41 chr13 3491594 3491765 -98381404 + MER5B DNA MER1_type 4 176 -2 28 48 0 0 chr13 3491876 3491918 -98381251 + AT_rich Low_complexity Low_complexity 1 42 0 189 171 0 0 chr13 3491918 3491953 -98381216 + (TG)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr13 3491953 3491976 -98381193 + (GA)n Simple_repeat Simple_repeat 2 24 0 1635 149 0 59 chr13 3491976 3492120 -98381049 - AluJo SINE Alu -40 272 152 1995 102 0 39 chr13 3492120 3492403 -98380766 - AluSg SINE Alu -19 291 20 1635 149 0 59 chr13 3492403 3492547 -98380622 - AluJo SINE Alu -160 152 1 2276 81 0 3 chr13 3492960 3493284 -98379885 - AluSg SINE Alu 0 323 1 224 149 21 0 chr13 3493662 3493709 -98379460 + C-rich Low_complexity Low_complexity 1 48 0 639 221 63 31 chr13 3494517 3494739 -98378430 - L1ME LINE L1 -357 5764 5536 711 176 65 41 chr13 3495146 3495316 -98377853 + MLT1B LTR MaLR 4 177 -213 203 307 31 47 chr13 3495428 3495555 -98377614 - MIR3 SINE MIR -69 139 15 377 269 0 62 chr13 3495910 3496055 -98377114 + L2 LINE L2 3084 3219 -94 809 128 0 0 chr13 3496055 3496164 -98377005 - FLAM_A SINE Alu -12 130 22 285 322 58 0 chr13 3496164 3496251 -98376918 + L2 LINE L2 3214 3305 -8 2394 63 0 31 chr13 3497039 3497358 -98375811 - AluY SINE Alu -2 309 1 1865 136 27 30 chr13 3497548 3497849 -98375320 - AluSx SINE Alu -12 300 1 1591 117 4 17 chr13 3498563 3498794 -98374375 - AluSx SINE Alu -84 228 1 365 171 37 0 chr13 3498794 3498876 -98374293 - L1MB7 LINE L1 -276 5908 5824 23263 108 14 46 chr13 3498973 3502666 -98370503 - L1PA8A LINE L1 -441 5690 2156 1994 97 76 7 chr13 3502666 3502955 -98370214 - AluSc SINE Alu 0 309 1 23263 108 14 46 chr13 3502955 3503501 -98369668 - L1PA8A LINE L1 -3975 2156 1594 1869 182 118 58 chr13 3503514 3504031 -98369138 - LTR10A LTR ERV1 -61 548 1 878 157 57 0 chr13 3504219 3504378 -98368791 + FRAM SINE Alu 1 163 -13 2625 175 127 33 chr13 3504378 3504723 -98368446 + L1ME3 LINE L1 1079 1390 -5036 2520 68 0 0 chr13 3504723 3505018 -98368151 - AluY SINE Alu -16 295 1 2625 175 127 33 chr13 3505018 3505823 -98367346 + L1ME3 LINE L1 1390 2433 -3993 5607 41 2 2 chr13 3505843 3506481 -98366688 + L1PA3 LINE L1 5518 6155 0 2209 243 55 29 chr13 3506502 3507199 -98365970 + L1ME3 LINE L1 2514 3228 -3198 198 0 0 0 chr13 3507547 3507569 -98365600 + (TG)n Simple_repeat Simple_repeat 2 23 0 809 280 101 28 chr13 3507572 3508346 -98364823 + L1ME3 LINE L1 4908 5854 -588 2207 129 0 0 chr13 3508346 3508655 -98364514 + AluSx SINE Alu 1 309 -3 809 280 101 28 chr13 3508655 3508931 -98364238 + L1ME3 LINE L1 5854 6108 -334 2731 278 104 21 chr13 3508950 3509847 -98363322 + L1M4b LINE L1 20 990 -5869 1866 186 24 34 chr13 3509889 3510298 -98362871 + L1M4b LINE L1 1144 1548 -5311 2640 250 152 12 chr13 3511647 3512567 -98360602 - L2 LINE L2 -1064 2250 1202 17639 35 8 1 chr13 3512567 3514692 -98358477 - L1P2 LINE L1 -2074 4072 1932 11017 30 9 4 chr13 3514671 3516235 -98356934 + L1P2 LINE L1 4086 5654 -501 * 4969 168 43 12 chr13 3516339 3517321 -98355848 - L1 LINE L1 -1140 5006 3995 185 218 73 18 chr13 3518873 3518928 -98354241 + MIR SINE MIR 99 156 -106 2177 108 7 0 chr13 3519203 3519333 -98353836 + AluSx SINE Alu 1 129 -183 2198 104 0 7 chr13 3519333 3519641 -98353528 + AluSg SINE Alu 1 306 -4 2177 108 7 0 chr13 3519641 3519806 -98353363 + AluSx SINE Alu 129 298 -14 24 0 0 0 chr13 3520717 3520741 -98352428 + AT_rich Low_complexity Low_complexity 1 24 0 998 263 173 28 chr13 3521019 3521448 -98351721 - L2 LINE L2 -2 3311 2821 327 282 29 33 chr13 3521674 3521855 -98351314 - MIR SINE MIR -14 248 3 22 0 0 0 chr13 3523613 3523635 -98349534 + AT_rich Low_complexity Low_complexity 1 22 0 417 367 69 12 chr13 3523644 3523889 -98349280 - MIR SINE MIR -1 261 3 288 104 21 21 chr13 3524656 3524704 -98348465 - MIR3 SINE MIR -12 196 149 205 156 0 0 chr13 3524946 3524978 -98348191 + CT-rich Low_complexity Low_complexity 1 32 0 340 186 0 0 chr13 3525287 3525346 -98347823 + AluJo SINE Alu 78 136 -166 2296 89 0 3 chr13 3525370 3525672 -98347497 + AluY SINE Alu 1 301 -10 237 338 0 25 chr13 3525681 3525761 -98347408 - L2 LINE L2 -236 3036 2959 1678 134 100 1 chr13 3526142 3526730 -98346439 - LTR34 LTR ERV1 0 699 1 2400 70 3 0 chr13 3527227 3527526 -98345643 - AluY SINE Alu -11 300 1 21 0 0 0 chr13 3527683 3527704 -98345465 + AT_rich Low_complexity Low_complexity 1 21 0 2062 133 0 22 chr13 3529394 3529710 -98343459 + AluJb SINE Alu 1 309 -3 234 307 130 102 chr13 3531280 3531326 -98341843 + L2 LINE L2 2972 3015 -257 1513 164 18 94 chr13 3531326 3531479 -98341690 + AluJo SINE Alu 1 104 -208 2290 93 10 7 chr13 3531479 3531780 -98341389 + AluSg SINE Alu 1 302 -8 1513 164 18 94 chr13 3531780 3531975 -98341194 + AluJo SINE Alu 104 312 0 234 307 130 102 chr13 3531975 3532221 -98340948 + L2 LINE L2 3015 3272 0 1628 183 7 39 chr13 3532258 3532564 -98340605 + AluJb SINE Alu 1 296 -16 2304 101 0 3 chr13 3533298 3533596 -98339573 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 3533730 3533752 -98339417 + AT_rich Low_complexity Low_complexity 1 22 0 1721 103 0 0 chr13 3535147 3535361 -98337808 - AluSx SINE Alu -87 225 12 1608 160 106 47 chr13 3536528 3536935 -98336234 + LTR10A LTR ERV1 118 548 -61 718 204 91 17 chr13 3537054 3537230 -98335939 + AluJo SINE Alu 123 311 -1 2373 78 0 0 chr13 3538061 3538357 -98334812 + AluY SINE Alu 1 296 -15 301 295 0 0 chr13 3540282 3540360 -98332809 + L2 LINE L2 1480 1557 -1757 1518 224 3 13 chr13 3540360 3540663 -98332506 - AluJb SINE Alu -11 301 2 439 201 187 0 chr13 3541097 3541236 -98331933 + L1MC4 LINE L1 6945 7109 -933 774 218 73 28 chr13 3541247 3541495 -98331674 + L1MC4 LINE L1 7276 7534 -508 219 358 49 0 chr13 3541667 3541748 -98331421 - L2 LINE L2 0 3272 3188 7250 123 12 6 chr13 3541975 3543439 -98329730 + Harlequin LTR ERV1 3209 6623 -26 1679 191 104 52 chr13 3543467 3543986 -98329183 + LTR10A LTR ERV1 1 546 -63 260 169 46 0 chr13 3544000 3544065 -98329104 + L1P LINE L1 1594 1661 -4485 2346 104 0 0 chr13 3544680 3544979 -98328190 + AluSx SINE Alu 2 300 -12 1818 135 96 16 chr13 3545124 3545436 -98327733 + MER1B DNA MER1_type 1 337 0 252 218 0 36 chr13 3545915 3545970 -98327199 + L2 LINE L2 2588 2640 -674 947 175 67 127 chr13 3546016 3546387 -98326782 - Charlie4a DNA MER1_type -159 349 1 429 318 168 51 chr13 3546524 3546839 -98326330 + L2 LINE L2 2920 3271 -1 25 0 0 0 chr13 3546967 3546992 -98326177 + AT_rich Low_complexity Low_complexity 1 25 0 2353 56 0 0 chr13 3547056 3547341 -98325828 - AluY SINE Alu -26 285 1 2059 101 14 17 chr13 3548069 3548365 -98324804 + AluSg SINE Alu 1 295 -15 2505 49 3 0 chr13 3548486 3548793 -98324376 + AluY SINE Alu 1 308 -3 1821 60 80 90 chr13 3549215 3549516 -98323653 - AluSq SINE Alu -14 299 2 309 253 178 41 chr13 3550182 3550328 -98322841 + L1M2 LINE L1 1068 1233 -5616 431 250 64 57 chr13 3551481 3551621 -98321548 + MIR SINE MIR 25 167 -41 394 282 114 13 chr13 3551629 3551778 -98321391 + MIR SINE MIR 93 256 -6 346 289 132 0 chr13 3552222 3552343 -98320826 + L2 LINE L2 3136 3272 0 189 330 44 11 chr13 3554347 3554438 -98318731 - L2 LINE L2 -6 3307 3214 608 244 73 29 chr13 3554580 3554895 -98318274 - Charlie7 DNA MER1_type -158 2454 2126 285 203 61 95 chr13 3554963 3555086 -98318083 - L1MC5 LINE L1 -114 7847 7728 2039 150 0 0 chr13 3555086 3555108 -98318061 - AluSx SINE Alu -5 307 286 201 74 0 0 chr13 3555108 3555135 -98318034 + (TG)n Simple_repeat Simple_repeat 2 28 0 2039 150 0 0 chr13 3555135 3555419 -98317750 - AluSx SINE Alu -25 287 1 285 203 61 95 chr13 3555419 3555443 -98317726 - L1MC5 LINE L1 -233 7728 7705 388 268 92 83 chr13 3557027 3557225 -98315944 - L1M2 LINE L1 -5579 1270 1066 3062 114 234 5 chr13 3557225 3557785 -98315384 + LTR12 LTR ERV1 1 688 0 388 268 92 83 chr13 3557785 3557922 -98315247 - L1M2 LINE L1 -5783 1066 932 875 177 0 111 chr13 3558117 3558360 -98314809 - MER20 DNA MER1_type -3 216 1 462 290 0 8 chr13 3558362 3558486 -98314683 + L2 LINE L2 3191 3313 0 1081 245 148 41 chr13 3558589 3558964 -98314205 - Charlie7 DNA MER1_type -1789 823 363 2303 102 3 3 chr13 3558964 3559267 -98313902 + AluSq SINE Alu 1 303 -10 1081 245 148 41 chr13 3559267 3559471 -98313698 - Charlie7 DNA MER1_type -2249 363 182 2233 119 13 0 chr13 3559501 3559804 -98313365 - AluSq SINE Alu -6 307 1 219 25 75 0 chr13 3559817 3559857 -98313312 + (TA)n Simple_repeat Simple_repeat 2 44 0 554 235 20 32 chr13 3560017 3560215 -98312954 + MLT1J2 LTR MaLR 1 194 -215 324 105 0 79 chr13 3560337 3560413 -98312756 + MLT1J2 LTR MaLR 381 450 0 2160 119 0 7 chr13 3560911 3561221 -98311948 - AluSq SINE Alu -5 308 1 23 33 0 0 chr13 3564010 3564040 -98309129 + AT_rich Low_complexity Low_complexity 1 30 0 887 105 0 16 chr13 3564065 3564189 -98308980 + FLAM_C SINE Alu 11 132 -11 2481 62 0 10 chr13 3564324 3564631 -98308538 + AluY SINE Alu 1 304 -7 542 196 113 0 chr13 3564797 3564930 -98308239 - MSTB2 LTR MaLR -47 410 263 2224 88 0 17 chr13 3565085 3565379 -98307790 + AluSc SINE Alu 1 289 -20 421 336 29 14 chr13 3565579 3565719 -98307450 - L3 LINE CR1 -41 1536 1395 2380 52 0 14 chr13 3566135 3566466 -98306703 - AluY SINE Alu 0 327 1 267 273 189 23 chr13 3566476 3566608 -98306561 + L2 LINE L2 3159 3312 -1 391 220 88 0 chr13 3566806 3566897 -98306272 + L2 LINE L2 3215 3313 0 25 31 0 0 chr13 3566994 3567026 -98306143 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 3567148 3567169 -98306000 + AT_rich Low_complexity Low_complexity 1 21 0 2217 121 0 0 chr13 3567388 3567685 -98305484 + AluSx SINE Alu 1 297 -15 382 242 55 24 chr13 3568095 3568260 -98304909 - LTR41 LTR ERVL -5 768 599 546 245 77 0 chr13 3568793 3568936 -98304233 - LTR41 LTR ERVL -619 154 1 6721 74 5 1 chr13 3569121 3570198 -98302971 - L1PA8A LINE L1 -27 6104 5025 4953 56 27 21 chr13 3570548 3571178 -98301991 - L1PA5 LINE L1 -3 6151 5518 2679 174 139 36 chr13 3571198 3572004 -98301165 - L1MCa LINE L1 -3993 2964 1959 2530 68 0 0 chr13 3572004 3572300 -98300869 + AluY SINE Alu 1 296 -15 2679 174 139 36 chr13 3572300 3572387 -98300782 - L1MCa LINE L1 -4998 1959 1882 2301 131 8 6 chr13 3573209 3573561 -98299608 - L1MA5A LINE L1 -2 6295 5943 2197 63 39 7 chr13 3573563 3573848 -98299321 - AluSq SINE Alu -19 294 1 989 108 0 0 chr13 3573848 3573978 -98299191 - AluSq/x SINE Alu -182 130 1 3285 215 94 46 chr13 3574159 3575221 -98297948 + L1MCb LINE L1 82 1194 -4851 1054 151 44 0 chr13 3575251 3575410 -98297759 + FRAM SINE Alu 1 160 -16 1191 221 108 18 chr13 3575410 3575745 -98297424 + L1MCb LINE L1 1217 1581 -4983 386 254 135 24 chr13 3575955 3576081 -98297088 - L1MCa LINE L1 -6700 159 20 798 274 124 41 chr13 3576100 3576376 -98296793 - L1ME3A LINE L1 -342 5828 5576 2277 117 0 0 chr13 3576376 3576684 -98296485 - AluSx SINE Alu -4 308 1 798 274 124 41 chr13 3576684 3577158 -98296011 - L1ME3A LINE L1 -594 5576 5023 714 285 58 10 chr13 3577189 3577480 -98295689 - L1ME3A LINE L1 -1214 4932 4628 198 0 0 0 chr13 3577483 3577505 -98295664 + (CA)n Simple_repeat Simple_repeat 2 23 0 2222 242 54 29 chr13 3577854 3578552 -98294617 - L1ME3A LINE L1 -3197 2949 2234 4057 40 8 8 chr13 3578571 3579049 -98294120 - L1PA4 LINE L1 -1 6154 5677 348 259 152 25 chr13 3579436 3579633 -98293536 + MIR SINE MIR 20 241 -21 387 393 22 11 chr13 3579851 3580123 -98293046 + L3 LINE CR1 937 1211 -366 183 42 0 0 chr13 3580317 3580341 -98292828 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2260 101 3 3 chr13 3580420 3580718 -98292451 - AluSq SINE Alu -10 303 6 255 328 88 73 chr13 3580886 3581202 -98291967 + L2 LINE L2 2422 2747 -567 2620 149 23 44 chr13 3581202 3581684 -98291485 + L1MB3 LINE L1 5712 6183 0 255 328 88 73 chr13 3581684 3581763 -98291406 + L2 LINE L2 2747 2823 -491 770 268 104 9 chr13 3581866 3582097 -98291072 + MIR SINE MIR 1 253 -9 2438 54 7 0 chr13 3582129 3582425 -98290744 - AluY SINE Alu -13 298 1 303 349 34 20 chr13 3582584 3582733 -98290436 + L2 LINE L2 3122 3272 0 222 184 41 20 chr13 3582735 3582784 -98290385 + L3 LINE CR1 1488 1537 -40 408 20 0 0 chr13 3583717 3583766 -98289403 + (GA)n Simple_repeat Simple_repeat 2 50 0 298 303 40 0 chr13 3583878 3583977 -98289192 - MER5A DNA MER1_type -77 112 10 295 239 64 46 chr13 3586458 3586567 -98286602 - MIR3 SINE MIR -8 200 90 2309 88 0 20 chr13 3587234 3587540 -98285629 + AluSq SINE Alu 1 300 -13 2051 141 0 3 chr13 3588045 3588342 -98284827 - AluJo SINE Alu -16 296 1 21 36 0 0 chr13 3588410 3588438 -98284731 + AT_rich Low_complexity Low_complexity 1 28 0 6747 164 52 15 chr13 3588464 3588546 -98284623 - L1MA9 LINE L1 -70 6242 6164 306 0 0 0 chr13 3588546 3588580 -98284589 + (TG)n Simple_repeat Simple_repeat 1 34 0 6747 164 52 15 chr13 3588580 3590718 -98282451 - L1MA9 LINE L1 -148 6164 3943 2581 171 28 19 chr13 3590713 3591244 -98281925 + L1MA9 LINE L1 3394 3929 -2217 * 245 88 147 118 chr13 3592516 3592542 -98280627 - MER46A DNA MER2_type -2565 166 142 1390 211 0 31 chr13 3592542 3592831 -98280338 - L1MB7 LINE L1 -1 6183 5904 690 134 225 0 chr13 3592832 3592974 -98280195 + MER46B DNA MER2_type 1 49 -187 6012 115 12 35 chr13 3592977 3594052 -98279117 + L1PB3 LINE L1 5097 6152 -2 1203 142 5 0 chr13 3594259 3594449 -98278720 + MER46B DNA MER2_type 46 236 0 1276 197 4 12 chr13 3594457 3594706 -98278463 - L1MB7 LINE L1 -289 5895 5649 210 290 30 40 chr13 3594777 3594877 -98278292 + L2 LINE L2 2781 2879 -435 340 257 18 44 chr13 3595416 3595529 -98277640 + L2 LINE L2 3204 3313 0 272 299 30 0 chr13 3596158 3596222 -98276947 + MER58A DNA MER1_type 1 66 -41 822 243 131 25 chr13 3596222 3596579 -98276590 - MER57A LTR ERV1 -2 401 1 450 227 0 0 chr13 3596579 3596667 -98276502 + MER58A DNA MER1_type 61 148 0 227 233 0 0 chr13 3596667 3596710 -98276459 + MER58A DNA MER1_type 177 219 -5 2230 94 44 0 chr13 3598103 3598400 -98274769 - AluSg SINE Alu 0 310 1 1922 108 32 4 chr13 3598460 3598738 -98274431 + AluSc SINE Alu 1 286 -23 234 91 0 0 chr13 3599136 3599169 -98274000 + (A)n Simple_repeat Simple_repeat 1 33 0 230 285 258 43 chr13 3599419 3599675 -98273494 + L3b LINE CR1 1257 1567 -16 23 33 0 0 chr13 3599821 3599851 -98273318 + AT_rich Low_complexity Low_complexity 1 30 0 362 254 76 42 chr13 3600160 3600278 -98272891 - MER5A DNA MER1_type -51 138 17 1200 186 5 9 chr13 3600888 3601098 -98272071 - MER3 DNA MER1_type 0 209 1 1524 134 169 12 chr13 3601366 3601620 -98271549 + AluJb SINE Alu 1 294 -8 257 170 0 38 chr13 3602017 3602070 -98271099 - L2 LINE L2 0 3313 3263 940 208 73 38 chr13 3602318 3602635 -98270534 - MLT1C LTR MaLR 0 467 140 1330 149 38 4 chr13 3602635 3602921 -98270248 + L1PA16 LINE L1 5858 6162 -1 625 180 25 87 chr13 3602947 3603108 -98270061 - MLT1C LTR MaLR -316 151 1 319 259 99 71 chr13 3603881 3604093 -98269076 - L2 LINE L2 -2 3311 3094 221 290 167 41 chr13 3604400 3604645 -98268524 - L2 LINE L2 -674 2640 2365 2016 124 0 7 chr13 3604713 3605003 -98268166 - AluSx SINE Alu -24 288 1 2346 70 0 3 chr13 3605190 3605517 -98267652 + AluY SINE Alu 1 326 0 435 329 29 14 chr13 3605933 3606073 -98267096 + L3 LINE CR1 1395 1536 -41 2218 92 0 17 chr13 3606273 3606567 -98266602 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 3606722 3606855 -98266314 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 3607021 3607328 -98265841 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 3607463 3607587 -98265582 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 3607612 3607642 -98265527 + AT_rich Low_complexity Low_complexity 1 30 0 2281 107 0 7 chr13 3608473 3608783 -98264386 - AluSx SINE Alu 0 312 5 2531 63 0 0 chr13 3609213 3609516 -98263653 - AluY SINE Alu -8 303 1 2384 45 21 7 chr13 3609720 3610009 -98263160 - AluY SINE Alu -18 293 1 228 285 168 0 chr13 3610502 3610639 -98262530 - HAL1 LINE L1 -2319 188 29 1016 197 16 0 chr13 3611369 3611552 -98261617 + MER5A DNA MER1_type 3 188 -1 434 266 129 60 chr13 3611581 3612246 -98260923 - L1MEd LINE L1 -2964 3165 2455 333 345 114 8 chr13 3612256 3612502 -98260667 - L1MEd LINE L1 -3969 2341 2070 1707 184 74 18 chr13 3612638 3612964 -98260205 + MER2 DNA MER2_type 1 344 0 786 255 82 85 chr13 3613191 3614241 -98258928 - L1MEd LINE L1 -4480 1649 609 288 339 114 40 chr13 3614452 3614830 -98258339 - MLT1J2 LTR MaLR -44 406 1 263 253 27 13 chr13 3614865 3614940 -98258229 - L1MEd LINE L1 -6031 88 13 192 250 0 0 chr13 3614947 3614987 -98258182 - MER5B DNA MER1_type -135 43 4 2353 70 3 35 chr13 3615212 3615525 -98257644 + AluY SINE Alu 1 303 -8 32 43 0 0 chr13 3616178 3616224 -98256945 + AT_rich Low_complexity Low_complexity 1 46 0 2412 84 0 0 chr13 3616348 3616644 -98256525 - AluSq SINE Alu -17 296 1 2044 93 0 15 chr13 3617139 3617407 -98255762 - AluSx SINE Alu -43 269 6 295 273 201 26 chr13 3617564 3617718 -98255451 - MIR3 SINE MIR -7 201 21 259 330 21 11 chr13 3618641 3618735 -98254434 - MIR SINE MIR -119 143 49 443 233 92 0 chr13 3618795 3618915 -98254254 + LTR33A LTR ERVL 61 191 -332 319 196 345 0 chr13 3618973 3619121 -98254048 + LTR33A LTR ERVL 318 516 -7 239 308 68 30 chr13 3619419 3619552 -98253617 - MER5B DNA MER1_type -40 138 1 723 199 58 0 chr13 3619560 3619731 -98253438 + MER5A DNA MER1_type 1 181 -8 246 321 60 22 chr13 3619952 3620086 -98253083 - L2 LINE L2 0 3313 3175 295 268 70 108 chr13 3622839 3622996 -98250173 + MER96 DNA MER1_type? 25 175 0 225 0 0 0 chr13 3623161 3623186 -98249983 + (TG)n Simple_repeat Simple_repeat 2 26 0 2089 147 0 6 chr13 3623197 3623511 -98249658 - AluSx SINE Alu 0 312 1 209 325 13 0 chr13 3625687 3625764 -98247405 - L2 LINE L2 -11 3302 3225 291 325 124 20 chr13 3625807 3626056 -98247113 + L3b LINE CR1 1123 1397 -186 1871 214 116 9 chr13 3626158 3626617 -98246552 - MLT2B2 LTR ERVL -7 508 1 2250 115 0 3 chr13 3626622 3626918 -98246251 - AluSx SINE Alu -17 295 1 268 330 41 0 chr13 3627489 3627586 -98245583 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 3627795 3627970 -98245199 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 3628190 3628249 -98244920 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 3628303 3628391 -98244778 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 3628786 3628928 -98244241 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 3629015 3629189 -98243980 + MER5A DNA MER1_type 1 159 -30 2522 63 48 40 chr13 3629593 3629972 -98243197 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 3630884 3631010 -98242159 + L3 LINE CR1 3 130 -1447 557 154 8 85 chr13 3631173 3631303 -98241866 + MLT2B1 LTR ERVL 399 518 -2 2550 61 0 0 chr13 3631596 3631893 -98241276 + AluY SINE Alu 1 297 -14 833 96 0 4 chr13 3632156 3632367 -98240802 - AluY SINE Alu -8 303 2 279 59 0 0 chr13 3632482 3632516 -98240653 - MLT2C2 LTR ERVL -335 129 96 762 211 96 46 chr13 3632540 3632758 -98240411 + MLT2C1 LTR ERVL 121 349 -48 189 213 0 0 chr13 3632780 3632827 -98240342 + C-rich Low_complexity Low_complexity 1 47 0 357 117 0 0 chr13 3633109 3633169 -98240000 + (TA)n Simple_repeat Simple_repeat 1 60 0 204 232 21 11 chr13 3633262 3633357 -98239812 + (TA)n Simple_repeat Simple_repeat 2 97 0 248 296 88 25 chr13 3633398 3633557 -98239612 - L1ME4a LINE L1 -71 6050 5882 2028 97 0 0 chr13 3633666 3633933 -98239236 + AluSq SINE Alu 44 310 -3 312 320 16 0 chr13 3633942 3634067 -98239102 - MIR SINE MIR -15 247 121 2576 55 0 3 chr13 3634176 3634484 -98238685 - AluY SINE Alu -4 307 1 2452 45 3 7 chr13 3635961 3636253 -98236916 + AluY SINE Alu 1 291 -20 1152 276 100 51 chr13 3637288 3638345 -98234824 + L1MCc LINE L1 1168 2484 -4638 2510 127 11 3 chr13 3638727 3639088 -98234081 - THE1B LTR MaLR 0 364 1 372 349 60 5 chr13 3639607 3639822 -98233347 + L2 LINE L2 2745 2971 -343 521 172 0 11 chr13 3639832 3639925 -98233244 - Tigger7 DNA MER2_type -6 2581 2490 * 1538 183 4 8 chr13 3639922 3640185 -98232984 - Tigger7 DNA MER2_type -2224 263 2 418 271 205 5 chr13 3640203 3640413 -98232756 + L2 LINE L2 2989 3240 -73 336 330 154 0 chr13 3640470 3640796 -98232373 - L2 LINE L2 -150 3163 2794 838 294 144 17 chr13 3640867 3641513 -98231656 - L2 LINE L2 -671 2643 1916 478 288 94 21 chr13 3641748 3641981 -98231188 + MIR SINE MIR 13 262 0 1487 289 29 25 chr13 3642733 3643346 -98229823 - L1MC4a LINE L1 -1883 5925 5310 761 118 17 0 chr13 3643317 3643436 -98229733 - L1MCa LINE L1 -4801 1625 1505 * 1383 174 190 45 chr13 3643436 3643810 -98229359 - MSTB2 LTR MaLR -7 450 23 5841 240 133 13 chr13 3643823 3645371 -98227798 - MSTD-int LTR MaLR 0 1735 2 1295 234 46 38 chr13 3645373 3645766 -98227403 - MSTD LTR MaLR 0 396 1 4615 201 34 100 chr13 3645801 3647367 -98225802 - L1MCa LINE L1 -4938 1488 26 180 125 0 0 chr13 3647442 3647474 -98225695 + (CA)n Simple_repeat Simple_repeat 1 32 0 1771 143 4 8 chr13 3647484 3647743 -98225426 - AluJo SINE Alu -49 263 6 2161 79 61 0 chr13 3647750 3648028 -98225141 - AluY SINE Alu -16 295 1 399 309 82 30 chr13 3648163 3648785 -98224384 - L1MC4a LINE L1 -1006 5420 4767 2225 100 3 7 chr13 3648823 3649141 -98224028 + AluSx SINE Alu 1 312 0 937 121 0 0 chr13 3649164 3649296 -98223873 + FLAM_C SINE Alu 1 132 -1 206 111 56 0 chr13 3649363 3649399 -98223770 + CT-rich Low_complexity Low_complexity 3 40 0 617 268 42 0 chr13 3649623 3649813 -98223356 + MIR SINE MIR 60 257 -5 378 0 0 0 chr13 3652107 3652149 -98221020 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 3652150 3652179 -98220990 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 3652241 3652279 -98220890 + GC_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr13 3652782 3652810 -98220359 + (TG)n Simple_repeat Simple_repeat 1 28 0 189 132 0 0 chr13 3654537 3654575 -98218594 + (TC)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 3656091 3656114 -98217055 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 3656748 3656800 -98216369 + GC_rich Low_complexity Low_complexity 1 52 0 206 220 17 0 chr13 3659531 3659590 -98213579 + CT-rich Low_complexity Low_complexity 1 60 0 309 317 7 113 chr13 3660117 3660401 -98212768 + L2 LINE L2 3014 3267 -5 365 237 31 0 chr13 3660618 3660715 -98212454 + MIR SINE MIR 93 192 -70 2322 69 0 60 chr13 3661897 3662216 -98210953 + AluY SINE Alu 4 303 -8 345 137 0 0 chr13 3662712 3662763 -98210406 - MLT1A1 LTR MaLR -58 307 257 203 171 158 53 chr13 3663953 3664029 -98209140 - L2 LINE L2 -12 3301 3218 256 257 9 106 chr13 3664045 3664158 -98209011 + L2 LINE L2 3171 3272 0 1649 148 18 25 chr13 3664238 3664515 -98208654 - AluJo SINE Alu -2 310 36 210 171 0 0 chr13 3664707 3664742 -98208427 + (TA)n Simple_repeat Simple_repeat 2 36 0 323 158 53 53 chr13 3665064 3665140 -98208029 - Charlie7 DNA MER1_type 0 2612 2537 23 0 0 0 chr13 3665175 3665198 -98207971 + AT_rich Low_complexity Low_complexity 1 23 0 182 255 59 0 chr13 3666032 3666083 -98207086 - L3b LINE CR1 -50 1533 1480 186 314 14 0 chr13 3666918 3666988 -98206181 + MIR3 SINE MIR 116 186 -22 1652 135 108 0 chr13 3668306 3668566 -98204603 - AluSx SINE Alu -24 288 1 288 262 58 29 chr13 3669115 3669218 -98203951 - MIR SINE MIR -80 128 23 208 333 71 0 chr13 3670726 3670825 -98202344 - MIR SINE MIR -112 150 45 334 294 64 18 chr13 3671550 3671659 -98201510 + L2 LINE L2 3159 3272 0 260 356 7 0 chr13 3672405 3672554 -98200615 + (CA)n Simple_repeat Simple_repeat 1 150 0 * 339 301 28 17 chr13 3672528 3672704 -98200465 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 193 215 31 92 chr13 3672742 3672807 -98200362 - L2 LINE L2 -10 3303 3243 2689 215 107 5 chr13 3672807 3673398 -98199771 - MER82 DNA MER2_type -2 651 1 182 211 35 0 chr13 3674477 3674534 -98198635 + CT-rich Low_complexity Low_complexity 2 60 0 224 316 118 21 chr13 3674703 3674890 -98198279 + MIR SINE MIR 23 227 -35 403 268 28 16 chr13 3676293 3676418 -98196751 - MIR3 SINE MIR -8 200 71 444 37 0 0 chr13 3677300 3677354 -98195815 + (TG)n Simple_repeat Simple_repeat 1 54 0 1735 164 40 3 chr13 3679385 3679684 -98193485 - AluJb SINE Alu -2 310 1 2575 30 0 7 chr13 3680046 3680345 -98192824 - AluY SINE Alu -14 297 1 215 351 26 18 chr13 3680489 3680603 -98192566 + MIR3 SINE MIR 88 202 -6 287 333 48 24 chr13 3680662 3680830 -98192339 - MIR SINE MIR -70 192 21 306 0 0 0 chr13 3682253 3682287 -98190882 + (TG)n Simple_repeat Simple_repeat 2 35 0 442 261 72 67 chr13 3682579 3682759 -98190410 + MER5A DNA MER1_type 8 188 -1 1302 64 0 0 chr13 3683256 3683412 -98189757 - L1PA10 LINE L1 -4 6164 6009 390 42 0 0 chr13 3683938 3683986 -98189183 + (TG)n Simple_repeat Simple_repeat 2 49 0 202 0 59 29 chr13 3684223 3684257 -98188912 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 35 41 0 0 chr13 3684292 3684341 -98188828 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr13 3687745 3687780 -98185389 + AT_rich Low_complexity Low_complexity 1 35 0 2373 80 0 13 chr13 3687781 3688083 -98185086 + AluY SINE Alu 1 298 -13 207 0 0 0 chr13 3689255 3689278 -98183891 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1662 195 0 3 chr13 3689278 3689560 -98183609 - AluSx SINE Alu -27 285 5 276 236 90 11 chr13 3689699 3689788 -98183381 - L2 LINE L2 -1 3312 3217 207 0 0 0 chr13 3691435 3691458 -98181711 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4038 244 74 68 chr13 3692245 3692692 -98180477 + L1ME1 LINE L1 422 865 -5531 2691 118 66 20 chr13 3692692 3693099 -98180070 - MSTB LTR MaLR 0 426 1 4038 244 74 68 chr13 3693099 3693760 -98179409 + L1ME1 LINE L1 865 1520 -4876 1772 68 0 5 chr13 3693760 3693981 -98179188 - AluY SINE Alu -6 305 86 4038 244 74 68 chr13 3693981 3694150 -98179019 + L1ME1 LINE L1 1520 1686 -4710 2429 75 0 0 chr13 3694150 3694442 -98178727 + AluY SINE Alu 1 292 -19 4038 244 74 68 chr13 3694442 3694828 -98178341 + L1ME1 LINE L1 1686 2098 -4298 2466 230 31 8 chr13 3694831 3695467 -98177702 + L1ME1 LINE L1 2179 2829 -3386 1919 50 0 0 chr13 3695453 3695692 -98177477 - L1P LINE L1 -848 5298 5060 * 2758 75 0 0 chr13 3695692 3696025 -98177144 + L1PA5 LINE L1 5820 6154 0 642 247 110 0 chr13 3696025 3696252 -98176917 + L1ME1 LINE L1 2806 3057 -3158 229 211 19 0 chr13 3696246 3696298 -98176871 + L1ME1 LINE L1 3762 3814 -2401 * 2190 123 3 0 chr13 3696328 3696630 -98176539 + AluSx SINE Alu 5 307 -5 2550 231 58 33 chr13 3696630 3697409 -98175760 + L1ME1 LINE L1 4053 4850 -1365 * 3066 208 86 28 chr13 3697400 3698300 -98174869 + L1ME1 LINE L1 5293 6399 -4 33 0 0 0 chr13 3699333 3699366 -98173803 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 3699525 3699554 -98173615 + AT_rich Low_complexity Low_complexity 1 29 0 660 287 121 18 chr13 3699677 3699900 -98173269 + MIR SINE MIR 13 258 -4 1529 119 80 88 chr13 3700775 3701055 -98172114 + L1MA8 LINE L1 5943 6221 -70 2282 113 0 0 chr13 3701055 3701357 -98171812 - AluSx SINE Alu -10 302 1 1529 119 80 88 chr13 3701357 3701428 -98171741 + L1MA8 LINE L1 6221 6291 0 472 320 75 23 chr13 3702510 3702816 -98170353 + L2 LINE L2 2253 2574 -740 892 225 67 0 chr13 3702926 3703135 -98170034 - MER46C DNA MER2_type -24 314 92 3351 149 9 11 chr13 3704625 3705194 -98167975 - L1MA9 LINE L1 0 6312 5745 338 385 8 0 chr13 3705473 3705595 -98167574 - L2 LINE L2 -9 3263 3141 2369 95 0 7 chr13 3705677 3705982 -98167187 + AluSq SINE Alu 1 303 -10 183 42 0 0 chr13 3706061 3706085 -98167084 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 387 393 22 11 chr13 3706279 3706551 -98166618 - L3 LINE CR1 -366 1211 937 348 259 152 25 chr13 3706769 3706966 -98166203 - MIR SINE MIR -21 241 20 1199 119 0 6 chr13 3708092 3708416 -98164753 + (CCA)n Simple_repeat Simple_repeat 1 503 0 579 269 12 29 chr13 3708417 3708588 -98164581 - MIR SINE MIR -9 253 86 30 0 0 0 chr13 3710174 3710204 -98162965 + AT_rich Low_complexity Low_complexity 1 30 0 507 209 29 64 chr13 3710509 3710681 -98162488 - MER104 DNA Tc2 0 180 15 206 224 20 0 chr13 3710747 3710796 -98162373 + (CCCTAA)n Simple_repeat Simple_repeat 4 53 0 229 405 41 15 chr13 3710796 3711063 -98162106 + L2 LINE L2 2463 2736 -578 1484 162 62 4 chr13 3711191 3711450 -98161719 - AluJo SINE Alu -38 274 1 1326 166 28 5 chr13 3711825 3712042 -98161127 + MER58A DNA MER1_type 1 222 -2 192 158 0 0 chr13 3713503 3713541 -98159628 + GA-rich Low_complexity Low_complexity 6 43 0 858 286 81 25 chr13 3713774 3713954 -98159215 - MLT1J LTR MaLR 0 511 343 2483 199 88 27 chr13 3713954 3714476 -98158693 + MLT2B3 LTR ERVL 1 554 0 858 286 81 25 chr13 3714476 3714750 -98158419 - MLT1J LTR MaLR -168 343 6 478 166 101 157 chr13 3715373 3715590 -98157579 + MER102a DNA MER1_type 126 330 0 354 348 90 32 chr13 3715593 3715993 -98157176 - L2 LINE L2 -1039 2275 1853 367 287 22 37 chr13 3716214 3716350 -98156819 - MIR SINE MIR -70 192 59 189 210 113 0 chr13 3716798 3716860 -98156309 + L2 LINE L2 3245 3313 0 711 299 0 15 chr13 3716974 3717178 -98155991 - MIR SINE MIR 0 262 62 2321 91 0 3 chr13 3717479 3717777 -98155392 - AluSx SINE Alu -15 297 1 328 271 133 13 chr13 3719287 3719438 -98153731 + MER5A DNA MER1_type 21 189 0 229 275 116 0 chr13 3719647 3719716 -98153453 - MIR SINE MIR -75 187 111 2225 111 10 0 chr13 3719838 3720136 -98153033 - AluSq SINE Alu -12 301 1 345 242 0 0 chr13 3720434 3720500 -98152669 + MER63 DNA MER1_type 681 746 -314 594 237 200 0 chr13 3722960 3723150 -98150019 - MIR SINE MIR -3 259 32 1867 211 40 11 chr13 3723632 3724078 -98149091 + MLT1C LTR MaLR 1 459 -8 260 262 262 0 chr13 3724087 3724190 -98148979 - MER5A DNA MER1_type -39 150 21 346 339 127 27 chr13 3724754 3725046 -98148123 + L2 LINE L2 2944 3264 -8 1222 49 0 27 chr13 3725594 3725778 -98147391 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1092 289 50 56 chr13 3725778 3726455 -98146714 + L2 LINE L2 2655 3313 0 219 296 57 0 chr13 3726613 3726701 -98146468 - L2 LINE L2 0 3272 3180 375 347 95 46 chr13 3727116 3727914 -98145255 + L2 LINE L2 2220 3058 -214 2121 249 64 40 chr13 3728038 3729021 -98144148 - L1MEc LINE L1 -4494 1784 817 243 0 0 0 chr13 3729023 3729050 -98144119 + (TA)n Simple_repeat Simple_repeat 1 27 0 2612 147 12 7 chr13 3729050 3729473 -98143696 - L1MB2 LINE L1 -62 6109 5685 2070 260 92 54 chr13 3729474 3730236 -98142933 - L1MEc LINE L1 -5571 825 35 1770 155 17 28 chr13 3730964 3731255 -98141914 - AluJo SINE Alu -24 288 1 373 317 81 8 chr13 3731402 3731525 -98141644 + MIR3 SINE MIR 3 134 -74 570 274 88 34 chr13 3731551 3731755 -98141414 - MIR SINE MIR 0 262 48 669 230 131 80 chr13 3731942 3732429 -98140740 - L1MEd LINE L1 -4927 1192 681 1244 145 114 86 chr13 3732789 3733079 -98140090 - AluJb SINE Alu -14 298 1 498 283 66 0 chr13 3733087 3733253 -98139916 - L1MEd LINE L1 -5939 180 4 326 314 97 0 chr13 3733254 3733378 -98139791 - MIR SINE MIR -61 201 66 27 39 0 19 chr13 3734227 3734244 -98138925 + AT_rich Low_complexity Low_complexity 1 17 -34 1542 110 103 8 chr13 3734244 3734507 -98138662 + L1MA3 LINE L1 6018 6305 0 27 39 0 19 chr13 3734507 3734541 -98138628 + AT_rich Low_complexity Low_complexity 17 51 0 23 33 0 0 chr13 3735110 3735140 -98138029 + AT_rich Low_complexity Low_complexity 1 30 0 758 266 31 5 chr13 3735140 3735332 -98137837 - MIR SINE MIR -51 211 15 283 250 145 57 chr13 3736920 3737044 -98136125 + MIR3 SINE MIR 21 155 -53 5518 148 21 8 chr13 3737434 3738325 -98134844 + MER4D LTR ERV1 1 903 0 2504 183 63 51 chr13 3738804 3739329 -98133840 + LTR26B LTR ERV1 1 531 0 183 42 0 0 chr13 3739561 3739585 -98133584 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 219 227 0 0 chr13 3740081 3740125 -98133044 + GA-rich Low_complexity Low_complexity 2 45 0 1845 161 63 9 chr13 3741151 3741561 -98131608 - MER31A LTR ERV1 -19 447 14 337 310 155 41 chr13 3743169 3743901 -98129268 + L2 LINE L2 2234 3052 -220 258 268 45 18 chr13 3743956 3744068 -98129101 + MER65A LTR ERV1 1 115 -330 500 210 10 0 chr13 3744519 3744619 -98128550 + L2 LINE L2 3172 3272 0 192 200 0 78 chr13 3745566 3745629 -98127540 + L2 LINE L2 3207 3303 -10 2115 55 82 34 chr13 3745858 3746033 -98127136 - AluYa5 SINE Alu -4 307 111 2562 50 7 0 chr13 3746033 3746336 -98126833 - AluY SINE Alu -6 305 1 2115 55 82 34 chr13 3746336 3746453 -98126716 - AluYa5 SINE Alu -200 111 1 22 0 0 0 chr13 3747436 3747458 -98125711 + AT_rich Low_complexity Low_complexity 1 22 0 3489 211 91 82 chr13 3747504 3748759 -98124410 + L1MC4 LINE L1 6759 8028 -14 1839 207 39 0 chr13 3748759 3749093 -98124076 - MER7A DNA MER2_type -1 345 1 3489 211 91 82 chr13 3749093 3749109 -98124060 + L1MC4 LINE L1 8028 8042 0 526 236 32 74 chr13 3751045 3751261 -98121908 - HAL1 LINE L1 -1 2506 2300 897 211 17 28 chr13 3751456 3751636 -98121533 - MER45A DNA AcHobo 0 178 1 1421 286 136 32 chr13 3751789 3752666 -98120503 - HAL1 LINE L1 -343 2164 1197 307 155 32 0 chr13 3752672 3752747 -98120422 - Alu SINE Alu -3 299 239 329 305 168 31 chr13 3752779 3752973 -98120196 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 3752973 3753004 -98120165 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 329 305 168 31 chr13 3753004 3753232 -98119937 - HAL1 LINE L1 -1530 977 663 193 234 0 0 chr13 3754663 3754710 -98118459 - MIR SINE MIR -111 151 105 2568 50 0 0 chr13 3754872 3755174 -98117995 + AluY SINE Alu 1 302 -9 322 401 28 19 chr13 3755281 3755493 -98117676 + L2 LINE L2 3032 3245 -27 2141 129 16 0 chr13 3755562 3755865 -98117304 - AluSx SINE Alu -4 308 1 2124 143 9 109 chr13 3757206 3757391 -98115778 + MLT2C1 LTR ERVL 1 118 -279 1501 172 16 67 chr13 3757391 3757705 -98115464 - AluJo SINE Alu -14 298 1 2124 143 9 109 chr13 3757705 3757960 -98115209 + MLT2C1 LTR ERVL 118 397 0 2359 69 3 0 chr13 3758571 3758859 -98114310 - AluSc SINE Alu -20 289 1 370 282 48 0 chr13 3759624 3759727 -98113442 + MIR SINE MIR 46 153 -109 2268 117 0 3 chr13 3760562 3760870 -98112299 + AluSx SINE Alu 5 311 -1 499 159 24 127 chr13 3760952 3761078 -98112091 + Tigger1 DNA MER2_type 6 118 -2300 255 31 0 0 chr13 3761078 3761110 -98112059 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1615 64 0 15 chr13 3761110 3761313 -98111856 - AluY SINE Alu -111 200 1 1097 71 0 0 chr13 3761324 3761465 -98111704 - AluY SINE Alu -1 310 170 15227 122 19 9 chr13 3761465 3763761 -98109408 + Tigger1 DNA MER2_type 101 2418 0 350 94 0 0 chr13 3764168 3764221 -98108948 - L1MA9 LINE L1 -255 6057 6005 235 316 103 32 chr13 3765494 3765649 -98107520 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 3766024 3766108 -98107061 + A-rich Low_complexity Low_complexity 4 85 0 711 51 24 55 chr13 3768313 3768570 -98104599 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 568 305 79 49 chr13 3769215 3769812 -98103357 - L1ME2 LINE L1 -293 5871 5257 184 353 0 0 chr13 3769926 3769994 -98103175 + MIR SINE MIR 48 115 -147 338 31 51 51 chr13 3770218 3770316 -98102853 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 2252 101 7 0 chr13 3770755 3771051 -98102118 - AluSc SINE Alu -11 298 1 2506 98 3 35 chr13 3771405 3771466 -98101703 - THE1A LTR MaLR 0 355 294 2430 54 3 7 chr13 3771466 3771764 -98101405 - AluY SINE Alu -14 297 1 2506 98 3 35 chr13 3771764 3772069 -98101100 - THE1A LTR MaLR -61 294 1 834 181 0 0 chr13 3772633 3772771 -98100398 + FLAM_C SINE Alu 1 138 -5 1565 174 15 58 chr13 3772775 3773103 -98100066 + 7SLRNA srpRNA srpRNA 2 315 -5 2715 48 0 0 chr13 3773434 3773744 -98099425 + AluY SINE Alu 1 310 -1 2526 54 3 16 chr13 3774412 3774727 -98098442 - AluY SINE Alu 0 311 1 186 314 54 50 chr13 3775054 3775293 -98097876 + L2 LINE L2 2602 2841 -473 213 39 0 0 chr13 3775654 3775680 -98097489 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 331 78 78 0 chr13 3775915 3775966 -98097203 - MLT2A1 LTR ERVL 0 453 399 361 144 61 0 chr13 3775974 3776106 -98097063 + (TA)n Simple_repeat Simple_repeat 2 141 0 3145 51 23 5 chr13 3776108 3776501 -98096668 - MLT2A1 LTR ERVL -44 400 1 396 224 197 67 chr13 3776501 3776622 -98096547 + MARNA DNA Mariner 188 291 -295 2103 142 0 0 chr13 3776622 3776925 -98096244 - AluJb SINE Alu -9 303 1 396 224 197 67 chr13 3776925 3777049 -98096120 + MARNA DNA Mariner 291 466 -120 580 300 12 33 chr13 3777961 3778204 -98094965 + MIR SINE MIR 18 255 -7 393 298 39 44 chr13 3780020 3780201 -98092968 - MIR SINE MIR -70 192 13 746 171 0 8 chr13 3780320 3780449 -98092720 + FLAM_C SINE Alu 1 128 -5 1187 197 79 48 chr13 3780464 3780754 -98092415 + AluJo SINE Alu 2 300 -2 21 57 0 0 chr13 3780972 3781007 -98092162 + AT_rich Low_complexity Low_complexity 1 35 0 377 51 25 38 chr13 3781111 3781190 -98091979 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 209 214 24 48 chr13 3783394 3783478 -98089691 + T-rich Low_complexity Low_complexity 4 85 0 194 316 103 32 chr13 3783853 3784008 -98089161 + MIR SINE MIR 81 246 -16 2043 66 0 0 chr13 3784765 3785006 -98088163 - AluY SINE Alu -70 241 1 530 166 0 151 chr13 3785299 3785438 -98087731 - MLT2D LTR ERVL -2 412 295 187 405 32 16 chr13 3785594 3785720 -98087449 - L3 LINE CR1 -1447 130 3 2540 61 48 40 chr13 3786632 3787011 -98086158 + L1PA5 LINE L1 5770 6151 -3 224 293 11 98 chr13 3787415 3787589 -98085580 - MER5A DNA MER1_type -30 159 1 285 275 225 14 chr13 3787676 3787818 -98085351 - MER5B DNA MER1_type -1 177 6 203 239 0 34 chr13 3788213 3788301 -98084868 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 203 254 34 0 chr13 3788355 3788414 -98084755 + (TA)n Simple_repeat Simple_repeat 1 61 0 289 326 46 17 chr13 3788634 3788809 -98084360 - L1MC/D LINE L1 -1935 5873 5694 268 330 41 0 chr13 3789018 3789115 -98084054 - L2 LINE L2 -13 3259 3159 1765 40 0 5 chr13 3789386 3789588 -98083581 - AluY SINE Alu -108 203 3 691 0 45 0 chr13 3790217 3790306 -98082863 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1891 153 0 0 chr13 3790316 3790590 -98082579 - AluSx SINE Alu -38 274 1 219 139 0 0 chr13 3791062 3791098 -98082071 + (TC)n Simple_repeat Simple_repeat 2 37 0 201 133 0 67 chr13 3791344 3791389 -98081780 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 357 281 59 51 chr13 3792409 3792628 -98080541 - MIR SINE MIR -33 229 11 1087 33 0 8 chr13 3794955 3795077 -98078092 + AluY SINE Alu 15 135 -176 1922 53 137 0 chr13 3795077 3795340 -98077829 + AluY SINE Alu 2 300 -1 23 0 0 0 chr13 3795340 3795363 -98077806 + AT_rich Low_complexity Low_complexity 1 23 0 601 304 29 21 chr13 3795687 3795930 -98077239 - MIR SINE MIR -1 261 17 21 71 0 0 chr13 3796241 3796283 -98076886 + AT_rich Low_complexity Low_complexity 1 42 0 2241 95 0 26 chr13 3796283 3796587 -98076582 - AluSq SINE Alu -17 296 1 3722 89 8 6 chr13 3796950 3797476 -98075693 - L1PB1 LINE L1 -7 6144 5618 1050 187 72 59 chr13 3797627 3797839 -98075330 + L1MA9 LINE L1 5946 6179 -121 324 0 0 0 chr13 3797839 3797875 -98075294 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 187 72 59 chr13 3797875 3797999 -98075170 + L1MA9 LINE L1 6179 6300 0 2071 141 0 3 chr13 3798079 3798376 -98074793 + AluJo SINE Alu 1 296 -16 2293 91 0 23 chr13 3798881 3799188 -98073981 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 3799855 3799964 -98073205 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 3800171 3800286 -98072883 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 3802445 3802543 -98070626 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 3802656 3802705 -98070464 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 3803638 3803687 -98069482 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 3803689 3803838 -98069331 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 3803997 3804293 -98068876 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 3804327 3804556 -98068613 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 3804738 3805220 -98067949 - L1MB3 LINE L1 0 6183 5712 202 369 45 5 chr13 3805314 3805536 -98067633 - L2 LINE L2 -662 2652 2422 1996 127 0 10 chr13 3805704 3805995 -98067174 + AluSq SINE Alu 6 293 -20 2135 88 37 7 chr13 3806009 3806305 -98066864 + AluY SINE Alu 1 305 -6 2717 181 81 41 chr13 3806737 3807834 -98065335 + pTR5 LTR ERV1 11 581 -133 234 273 0 15 chr13 3808502 3808568 -98064601 - L1MC5 LINE L1 -48 7913 7849 1328 194 113 40 chr13 3808852 3809198 -98063971 - MLT1A2 LTR MaLR 0 374 4 496 284 68 4 chr13 3809203 3809477 -98063692 - L1MC4 LINE L1 -387 7655 7260 370 239 138 0 chr13 3809582 3809720 -98063449 - L1ME4a LINE L1 0 6121 5965 324 247 0 12 chr13 3810171 3810256 -98062913 + MER5A DNA MER1_type 26 109 -80 464 311 45 0 chr13 3810510 3810687 -98062482 + MIR SINE MIR 78 262 0 4738 158 35 22 chr13 3812872 3813762 -98059407 - L1MB3 LINE L1 0 6183 5283 549 313 77 56 chr13 3816140 3816530 -98056639 + L2 LINE L2 2910 3307 -6 4059 125 88 45 chr13 3816879 3817632 -98055537 + LTR1 LTR ERV1 1 785 0 463 340 184 26 chr13 3817909 3818666 -98054503 - L3 LINE CR1 -665 912 37 4042 112 65 6 chr13 3819376 3820010 -98053159 - L1PA16 LINE L1 -1 6165 5495 22 35 0 0 chr13 3820353 3820382 -98052787 + AT_rich Low_complexity Low_complexity 1 29 0 1649 108 48 4 chr13 3820685 3820953 -98052216 + L1PB4 LINE L1 5333 5612 -544 3423 118 13 104 chr13 3820953 3821035 -98052134 - LTR12 LTR ERV1 -134 580 492 2013 110 18 0 chr13 3821035 3821316 -98051853 - AluY SINE Alu -10 301 16 3423 118 13 104 chr13 3821316 3821870 -98051299 - LTR12 LTR ERV1 -222 492 2 3042 152 42 0 chr13 3821870 3822398 -98050771 + L1PB4 LINE L1 5607 6156 0 281 281 0 0 chr13 3823457 3823521 -98049648 + MER97b DNA MER1_type? 981 1044 -9 2448 80 3 0 chr13 3824855 3825155 -98048014 - AluY SINE Alu -10 301 1 226 250 238 0 chr13 3825155 3825239 -98047930 + MIR3 SINE MIR 102 205 -3 242 268 18 0 chr13 3825322 3825378 -98047791 + L2 LINE L2 3123 3179 -93 1109 158 5 0 chr13 3825436 3825626 -98047543 - L1MA5 LINE L1 0 6300 6110 192 240 60 0 chr13 3827603 3827653 -98045516 + MIR SINE MIR 83 135 -73 201 238 0 0 chr13 3827860 3827902 -98045267 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 3828414 3828435 -98044734 + AT_rich Low_complexity Low_complexity 1 21 0 2193 162 11 25 chr13 3831083 3831514 -98041655 + L1MA5 LINE L1 5621 6050 -250 998 117 8 144 chr13 3831493 3831750 -98041419 + L1MB8 LINE L1 5904 6125 -53 * 34 0 0 0 chr13 3831750 3831784 -98041385 + AT_rich Low_complexity Low_complexity 1 34 0 2395 50 3 23 chr13 3832024 3832326 -98040843 + AluY SINE Alu 1 296 -15 2356 74 3 16 chr13 3832754 3833066 -98040103 - AluY SINE Alu -3 308 1 2507 77 0 0 chr13 3833460 3833770 -98039399 - AluY SINE Alu -1 310 1 1581 177 27 17 chr13 3834058 3834357 -98038812 - AluJo SINE Alu -10 302 1 2498 57 0 16 chr13 3834357 3834672 -98038497 - AluY SINE Alu -1 310 1 616 120 23 45 chr13 3834678 3834811 -98038358 - L1MB8 LINE L1 0 6178 6049 2968 144 5 49 chr13 3834986 3835556 -98037613 - L1MA10 LINE L1 0 6334 5790 2571 217 113 31 chr13 3835575 3836325 -98036844 + MER21B LTR ERV1 12 823 -40 284 269 13 0 chr13 3836396 3836474 -98036695 - L1MA10 LINE L1 -385 5783 5705 2438 66 0 3 chr13 3836562 3836866 -98036303 - AluY SINE Alu -6 305 3 509 236 32 74 chr13 3839038 3839254 -98033915 - HAL1 LINE L1 -1 2506 2300 825 211 17 28 chr13 3839449 3839629 -98033540 - MER45A DNA AcHobo 0 178 1 1359 284 136 32 chr13 3839782 3840659 -98032510 - HAL1 LINE L1 -343 2164 1197 306 155 32 0 chr13 3840665 3840740 -98032429 - Alu SINE Alu -3 299 239 297 305 168 31 chr13 3840772 3840966 -98032203 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 3840966 3840997 -98032172 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 297 305 168 31 chr13 3840997 3841225 -98031944 - HAL1 LINE L1 -1530 977 663 2265 94 0 7 chr13 3842865 3843162 -98030007 + AluY SINE Alu 1 295 -16 220 305 150 55 chr13 3843326 3843526 -98029643 - L2 LINE L2 -833 2481 2263 419 35 18 0 chr13 3843671 3843728 -98029441 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 191 358 90 8 chr13 3843943 3844077 -98029092 - MIR SINE MIR -70 192 48 27 49 0 0 chr13 3845299 3845340 -98027829 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 3845539 3845561 -98027608 + AT_rich Low_complexity Low_complexity 1 22 0 1746 177 27 7 chr13 3845563 3845862 -98027307 - AluJb SINE Alu -7 305 1 275 356 9 0 chr13 3846714 3846829 -98026340 - MIR SINE MIR -112 150 35 270 181 57 48 chr13 3846918 3847023 -98026146 - MER113 DNA MER1_type? -301 220 115 186 342 49 53 chr13 3847600 3847904 -98025265 - L2 LINE L2 -6 3307 3005 2255 112 3 3 chr13 3848216 3848528 -98024641 - AluSx SINE Alu 0 312 1 23 0 0 0 chr13 3849529 3849552 -98023617 + GC_rich Low_complexity Low_complexity 1 23 0 181 250 42 0 chr13 3850752 3850800 -98022369 - MIR3 SINE MIR -6 202 153 266 360 18 0 chr13 3850909 3851023 -98022146 - MIR SINE MIR -124 138 23 419 35 18 0 chr13 3852092 3852149 -98021020 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 220 305 150 55 chr13 3852294 3852494 -98020675 + L2 LINE L2 2263 2481 -833 1910 145 3 0 chr13 3852658 3852948 -98020221 - AluSx SINE Alu -16 296 6 222 292 100 17 chr13 3853106 3853226 -98019943 + MIR SINE MIR 67 196 -66 2162 123 0 0 chr13 3853339 3853631 -98019538 - AluSx SINE Alu -20 292 1 2294 134 3 0 chr13 3854427 3854770 -98018399 - L1PA16 LINE L1 -9 6157 5814 786 144 0 0 chr13 3854913 3855038 -98018131 - L1PA16 LINE L1 -558 5608 5484 219 304 14 108 chr13 3855095 3855156 -98018013 - L2 LINE L2 0 3272 3207 2167 81 33 0 chr13 3855156 3855428 -98017741 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 3855430 3855459 -98017710 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 219 304 14 108 chr13 3855459 3855542 -98017627 - L2 LINE L2 -66 3206 3139 466 228 53 53 chr13 3855893 3856082 -98017087 - L2 LINE L2 0 3313 3125 1148 249 150 3 chr13 3857034 3857465 -98015704 + MER110A LTR ERV1 3 477 0 2016 153 35 3 chr13 3857573 3857990 -98015179 + L1MC2 LINE L1 5185 5614 -719 462 170 203 17 chr13 3857990 3858115 -98015054 + MLT1A1 LTR MaLR 1 161 -213 6715 94 8 9 chr13 3858121 3858398 -98014771 + L1PA10 LINE L1 4686 4962 -1206 2268 86 0 30 chr13 3858398 3858702 -98014467 + AluY SINE Alu 1 295 -16 6715 94 8 9 chr13 3858702 3859880 -98013289 + L1PA10 LINE L1 4962 6136 -32 714 141 70 8 chr13 3860088 3860216 -98012953 + MLT1A1 LTR MaLR 226 361 -4 3577 169 37 23 chr13 3860221 3860921 -98012248 + L1MC2 LINE L1 5626 6335 -9 276 30 0 0 chr13 3863029 3863062 -98010107 + (TG)n Simple_repeat Simple_repeat 2 34 0 2002 148 3 3 chr13 3863177 3863475 -98009694 + AluJb SINE Alu 1 298 -14 312 252 72 65 chr13 3863683 3863868 -98009301 + LTR48B LTR ERV1 337 634 -10 308 231 141 16 chr13 3865296 3865417 -98007752 - MIR SINE MIR -16 246 111 621 260 39 0 chr13 3865657 3865838 -98007331 + MER20 DNA MER1_type 31 218 -1 2107 104 10 7 chr13 3866156 3866445 -98006724 + AluSg1 SINE Alu 1 290 -19 237 291 88 34 chr13 3866604 3866752 -98006417 + L2 LINE L2 2895 3050 -263 220 288 0 0 chr13 3866777 3866836 -98006333 + L2 LINE L2 3183 3241 -72 404 126 42 36 chr13 3866887 3867054 -98006115 + (TG)n Simple_repeat Simple_repeat 2 169 0 300 120 53 27 chr13 3867159 3867309 -98005860 + (TG)n Simple_repeat Simple_repeat 1 154 0 245 167 52 31 chr13 3867330 3867426 -98005743 + (TG)n Simple_repeat Simple_repeat 1 98 0 4151 128 79 19 chr13 3868777 3869518 -98003651 + LTR1 LTR ERV1 16 785 0 190 256 0 0 chr13 3871040 3871079 -98002090 - L3 LINE CR1 -6 1571 1533 1020 204 50 11 chr13 3871336 3871596 -98001573 + MER33 DNA MER1_type 17 286 -38 189 121 0 0 chr13 3872520 3872553 -98000616 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 2250 122 0 0 chr13 3873462 3873765 -97999404 + AluSx SINE Alu 1 303 -9 327 49 0 0 chr13 3875757 3875798 -97997371 + (TG)n Simple_repeat Simple_repeat 1 41 0 362 57 19 0 chr13 3875914 3875967 -97997202 + (TG)n Simple_repeat Simple_repeat 1 54 0 2055 177 64 3 chr13 3876450 3876847 -97996322 + MSTB LTR MaLR 1 356 -8 28 0 0 0 chr13 3877278 3877306 -97995863 + AT_rich Low_complexity Low_complexity 1 28 0 1174 225 62 34 chr13 3878252 3878608 -97994561 - MLT1A2 LTR MaLR -8 366 1 955 164 0 7 chr13 3878876 3879028 -97994141 - AluJb SINE Alu -20 292 142 230 222 16 16 chr13 3879199 3879262 -97993907 + (CATA)n Simple_repeat Simple_repeat 4 66 0 473 226 6 17 chr13 3879264 3879445 -97993724 + (CA)n Simple_repeat Simple_repeat 2 180 0 239 284 0 6 chr13 3879472 3879634 -97993535 + (CA)n Simple_repeat Simple_repeat 2 162 0 252 284 11 21 chr13 3879640 3879735 -97993434 + (CATA)n Simple_repeat Simple_repeat 3 96 0 271 261 15 0 chr13 3879743 3879877 -97993292 + (CA)n Simple_repeat Simple_repeat 1 136 0 2314 72 0 39 chr13 3881627 3881934 -97991235 + AluY SINE Alu 1 295 -16 1334 110 94 0 chr13 3882427 3882618 -97990551 - AluSx SINE Alu -99 213 5 23 54 0 0 chr13 3884934 3884971 -97988198 + AT_rich Low_complexity Low_complexity 1 37 0 302 333 69 10 chr13 3885406 3885508 -97987661 - HAL1 LINE L1 -1040 1467 1360 291 238 38 12 chr13 3885515 3885595 -97987574 + MER5A DNA MER1_type 102 183 -6 435 228 203 19 chr13 3885685 3885843 -97987326 + MER5A DNA MER1_type 1 187 -2 519 269 167 6 chr13 3885857 3886013 -97987156 - MER5A DNA MER1_type -5 184 4 181 289 0 0 chr13 3886225 3886270 -97986899 + L2 LINE L2 3269 3313 0 7294 33 0 5 chr13 3889646 3890504 -97982665 + L1PA4 LINE L1 5301 6154 -1 337 356 46 8 chr13 3891942 3892006 -97981163 + L2 LINE L2 2815 2875 -397 2510 138 74 2 chr13 3892006 3892426 -97980743 - LTR47A LTR ERVL 0 452 3 337 356 46 8 chr13 3892426 3892600 -97980569 + L2 LINE L2 2875 3062 -210 272 280 63 74 chr13 3893084 3893259 -97979910 - MLT1I LTR MaLR -2 407 235 4114 155 93 22 chr13 3893605 3894101 -97979068 - MER6 DNA MER2_type 0 865 289 192 77 0 0 chr13 3894101 3894127 -97979042 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4114 155 93 22 chr13 3894127 3894436 -97978733 - MER6 DNA MER2_type -576 289 3 265 310 100 0 chr13 3895040 3895140 -97978029 - L2 LINE L2 -40 3273 3164 204 273 156 13 chr13 3895339 3895416 -97977753 + L2 LINE L2 3185 3272 0 644 100 8 0 chr13 3895605 3895725 -97977444 + (TG)n Simple_repeat Simple_repeat 2 122 0 1824 166 0 16 chr13 3897310 3897617 -97975552 + AluJb SINE Alu 1 302 -10 381 381 40 6 chr13 3898186 3898359 -97974810 - MER5A DNA MER1_type -10 179 1 2287 112 3 3 chr13 3899997 3900309 -97972860 + AluSx SINE Alu 1 312 0 283 338 49 56 chr13 3900621 3900926 -97972243 + L2 LINE L2 3005 3307 -6 320 356 9 0 chr13 3901697 3901812 -97971357 + MIR SINE MIR 35 150 -112 1787 181 26 7 chr13 3902664 3902968 -97970201 + AluJb SINE Alu 1 310 -2 27 49 0 0 chr13 3903186 3903227 -97969942 + AT_rich Low_complexity Low_complexity 1 41 0 265 314 83 58 chr13 3903760 3904076 -97969093 - L2 LINE L2 -218 3054 2716 248 335 149 16 chr13 3904446 3904634 -97968535 + MIR SINE MIR 44 256 -6 419 35 18 0 chr13 3904798 3904855 -97968314 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 272 305 150 55 chr13 3905000 3905200 -97967969 + L2 LINE L2 2263 2481 -833 2402 85 0 0 chr13 3905363 3905658 -97967511 - AluY SINE Alu -16 295 1 1033 263 83 97 chr13 3906223 3906924 -97966245 + MER21B LTR ERV1 24 714 -149 216 327 0 0 chr13 3907401 3907453 -97965716 - L3 LINE CR1 -7 1570 1519 192 216 0 0 chr13 3907464 3907501 -97965668 + L2 LINE L2 3276 3312 -1 180 246 40 103 chr13 3907499 3907625 -97965544 - MIR SINE MIR -73 135 18 * 194 348 29 0 chr13 3908714 3908783 -97964386 + MIR SINE MIR 79 149 -113 5645 123 229 81 chr13 3908820 3910297 -97962872 - pTR5 LTR ERV1 0 2438 743 499 268 0 0 chr13 3911527 3911639 -97961530 - MIR SINE MIR -88 174 63 259 284 16 94 chr13 3911863 3911990 -97961179 - MLT1L LTR MaLR -248 367 251 679 152 0 9 chr13 3912503 3912608 -97960561 - AluSg/x SINE Alu -13 299 196 287 342 36 9 chr13 3912610 3912738 -97960431 - MIR SINE MIR -62 146 18 220 194 0 0 chr13 3913829 3913865 -97959304 + polypurine Low_complexity Low_complexity 4 39 0 339 292 93 6 chr13 3914149 3914310 -97958859 + MER91A DNA MER1_type 19 193 -3 225 335 300 0 chr13 3914547 3914717 -97958452 + MIR SINE MIR 9 229 -33 2157 161 106 3 chr13 3915905 3916291 -97956878 - MSTB LTR MaLR 0 426 1 1446 190 52 78 chr13 3916458 3916858 -97956311 + MLT1B LTR MaLR 1 390 0 1666 106 136 4 chr13 3917505 3917770 -97955399 + AluY SINE Alu 1 300 -1 703 291 36 47 chr13 3918116 3918381 -97954788 - MIR SINE MIR -1 261 5 21 71 0 0 chr13 3918670 3918712 -97954457 + AT_rich Low_complexity Low_complexity 1 42 0 2242 96 0 26 chr13 3918697 3919016 -97954153 - AluSq SINE Alu -2 311 5 2617 105 3 6 chr13 3919379 3919742 -97953427 - L1PB1 LINE L1 -7 6860 6499 498 126 0 27 chr13 3919743 3919854 -97953315 + (TA)n Simple_repeat Simple_repeat 1 108 0 317 100 117 0 chr13 3919854 3919914 -97953255 - L1PB1 LINE L1 -360 6507 6441 44853 39 2 6 chr13 3919917 3926096 -97947073 - L1PA3 LINE L1 0 6155 1 15686 167 35 11 chr13 3926096 3931312 -97941857 - L1PB1 LINE L1 -412 6455 1102 1545 141 114 15 chr13 3931340 3931603 -97941566 - AluJo SINE Alu -23 289 1 237 234 135 50 chr13 3931610 3931751 -97941418 - L1ME LINE L1 -392 5761 5609 2255 99 0 3 chr13 3931772 3932066 -97941103 - AluY SINE Alu -16 295 3 351 273 146 19 chr13 3932372 3932687 -97940482 - L1ME LINE L1 -805 5324 4970 428 256 45 23 chr13 3932938 3933114 -97940055 - L1ME LINE L1 -4980 1139 960 207 162 48 9 chr13 3933119 3933224 -97939945 + (TA)n Simple_repeat Simple_repeat 1 109 0 818 178 0 0 chr13 3933240 3933375 -97939794 - FRAM SINE Alu -5 171 37 819 298 111 46 chr13 3933872 3934583 -97938586 - L1ME LINE L1 -5328 791 35 2226 108 3 6 chr13 3935144 3935458 -97937711 + AluSp SINE Alu 1 313 0 214 344 0 0 chr13 3935575 3935636 -97937533 - L2 LINE L2 -26 3287 3227 201 171 0 0 chr13 3936395 3936430 -97936739 + A-rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 3938163 3938185 -97934984 + AT_rich Low_complexity Low_complexity 1 22 0 580 196 0 105 chr13 3938891 3939044 -97934125 - Charlie1 DNA MER1_type -2 2759 2623 * 757 236 107 9 chr13 3939031 3939247 -97933922 - Charlie1 DNA MER1_type -2522 239 3 275 366 53 0 chr13 3939329 3939460 -97933709 + MIR SINE MIR 8 145 -117 1652 159 0 0 chr13 3940696 3940947 -97932222 - AluSx SINE Alu -31 281 31 1571 191 31 72 chr13 3940948 3941353 -97931816 - LTR12 LTR ERV1 -234 1800 100 266 198 59 79 chr13 3941354 3941455 -97931714 - AluS SINE Alu -227 75 1 1450 133 7 81 chr13 3941463 3941734 -97931435 - AluJo SINE Alu -24 288 38 273 281 70 35 chr13 3941759 3941873 -97931296 + MIR SINE MIR 30 147 -115 222 363 22 0 chr13 3942096 3942187 -97930982 - MIR SINE MIR -93 115 23 * 950 245 4 13 chr13 3942184 3942417 -97930752 + MIR SINE MIR 32 262 0 363 269 11 0 chr13 3945907 3946000 -97927169 + MIR SINE MIR 120 213 -49 459 0 0 0 chr13 3946407 3946458 -97926711 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 183 42 0 0 chr13 3946458 3946482 -97926687 + (TC)n Simple_repeat Simple_repeat 1 24 0 2296 82 14 0 chr13 3946482 3946775 -97926394 - AluY SINE Alu -14 297 1 246 119 24 0 chr13 3947116 3947158 -97926011 - L2 LINE L2 0 3313 3271 284 0 28 0 chr13 3948522 3948558 -97924611 + (TG)n Simple_repeat Simple_repeat 2 38 0 294 291 150 9 chr13 3949726 3949870 -97923299 + MIR SINE MIR 13 162 -67 706 285 214 17 chr13 3950177 3951035 -97922134 - L2 LINE L2 -5 3308 2271 369 0 0 0 chr13 3952402 3952443 -97920726 + (CA)n Simple_repeat Simple_repeat 1 41 0 420 55 0 0 chr13 3952628 3952683 -97920486 + (TG)n Simple_repeat Simple_repeat 2 56 0 185 356 52 9 chr13 3954970 3955085 -97918084 + L2 LINE L2 3153 3272 0 282 224 48 79 chr13 3956774 3956863 -97916306 + L1ME4a LINE L1 5959 6042 -79 2443 83 0 3 chr13 3956863 3957175 -97915994 - AluY SINE Alu 0 311 1 282 224 48 79 chr13 3957175 3957250 -97915919 + L1ME4a LINE L1 6042 6118 -3 226 221 156 13 chr13 3957517 3957594 -97915575 - HsTC2 DNA Tc2 -1809 89 2 698 313 24 12 chr13 3957635 3957884 -97915285 + L1M4 LINE L1 3614 3865 -2281 1044 246 98 20 chr13 3958402 3958842 -97914327 + L1M4 LINE L1 3997 4470 -1676 10185 160 42 15 chr13 3958842 3960651 -97912518 + Tigger4(Zombi) DNA MER2_type 1 1858 -873 328 181 193 0 chr13 3961719 3961802 -97911367 - MER5A DNA MER1_type -77 112 14 325 98 0 0 chr13 3962993 3963044 -97910125 + L1MA3 LINE L1 6124 6174 -131 272 313 0 0 chr13 3963867 3963934 -97909235 + polypyrimidine Low_complexity Low_complexity 3 69 0 2291 257 69 35 chr13 3964085 3964953 -97908216 - L1ME1 LINE L1 -15 6220 5323 520 240 76 20 chr13 3964964 3965214 -97907955 - L1ME1 LINE L1 -1229 4986 4723 547 272 86 50 chr13 3966408 3966827 -97906342 - L1ME1 LINE L1 -1907 4308 3875 717 300 69 23 chr13 3966848 3967371 -97905798 - L1ME1 LINE L1 -3248 2967 2421 2367 96 0 0 chr13 3967495 3967797 -97905372 - AluSg SINE Alu -8 302 1 289 213 124 41 chr13 3967797 3967966 -97905203 - L1ME1 LINE L1 -4099 2297 2115 367 137 27 0 chr13 3968130 3968203 -97904966 + GA-rich Low_complexity Low_complexity 2 76 0 376 282 143 32 chr13 3968239 3968428 -97904741 - L1ME1 LINE L1 -4595 1801 1584 2156 97 6 59 chr13 3968428 3968749 -97904420 - AluSq SINE Alu -9 304 1 376 282 143 32 chr13 3968749 3968775 -97904394 - L1ME1 LINE L1 -4812 1584 1562 1295 174 98 98 chr13 3968818 3969279 -97903890 + LTR1 LTR ERV1 1 461 -324 980 119 26 7 chr13 3969282 3969433 -97903736 + LTR1 LTR ERV1 632 785 0 272 273 120 24 chr13 3969501 3969710 -97903459 - L1ME1 LINE L1 -4897 1499 1271 616 271 42 47 chr13 3970267 3970459 -97902710 + MER58D DNA MER1_type 2 192 -194 331 281 0 22 chr13 3970459 3970548 -97902621 + MLT1D LTR MaLR 1 87 -539 987 236 65 11 chr13 3970596 3970859 -97902310 + MLT1C LTR MaLR 1 277 -190 676 160 9 0 chr13 3971014 3971120 -97902049 - MLT1D LTR MaLR -398 107 1 693 169 30 60 chr13 3971121 3971303 -97901866 + MLT1C LTR MaLR 304 463 -4 1180 227 15 91 chr13 3971329 3971734 -97901435 + MLT1D LTR MaLR 132 505 0 846 180 52 21 chr13 3971734 3971927 -97901242 + MER58D DNA MER1_type 188 386 0 2106 186 10 18 chr13 3975313 3975712 -97897457 + MSTD LTR MaLR 1 396 0 443 277 0 27 chr13 3976083 3976267 -97896902 + (TG)n Simple_repeat Simple_repeat 2 180 0 386 309 0 0 chr13 3976299 3976467 -97896702 + (TG)n Simple_repeat Simple_repeat 2 169 0 357 286 17 11 chr13 3976543 3976721 -97896448 + (TG)n Simple_repeat Simple_repeat 1 179 0 239 0 32 0 chr13 3978407 3978438 -97894731 + (CA)n Simple_repeat Simple_repeat 1 32 0 190 318 112 0 chr13 3979852 3979959 -97893210 - L2 LINE L2 0 3272 3154 243 284 99 0 chr13 3980775 3980856 -97892313 - L2 LINE L2 -15 3298 3210 210 118 0 0 chr13 3981192 3981226 -97891943 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 141 106 62 chr13 3981345 3981635 -97891534 - LTR47A LTR ERVL 0 452 135 2126 113 10 7 chr13 3981635 3981944 -97891225 - AluSq SINE Alu -3 310 1 1804 141 106 62 chr13 3981944 3982086 -97891083 - LTR47A LTR ERVL -317 135 1 1949 149 52 19 chr13 3983343 3983706 -97889463 - THE1C LTR MaLR 0 375 1 435 98 0 49 chr13 3983706 3983788 -97889381 - THE1C-int LTR MaLR 0 1580 1503 9063 122 68 9 chr13 3983934 3985320 -97887849 - THE1C-int LTR MaLR -112 1468 1 1863 122 70 57 chr13 3985320 3985690 -97887479 - THE1C LTR MaLR 0 375 1 2300 66 11 0 chr13 3988835 3989159 -97884010 - AluYb8 SINE Alu 0 327 1 2194 123 0 13 chr13 3989806 3990116 -97883053 - AluSx SINE Alu -6 306 1 1701 113 52 8 chr13 3990757 3991031 -97882138 - AluSx SINE Alu 0 312 38 229 368 26 0 chr13 3991783 3991897 -97881272 + MIR SINE MIR 32 148 -114 269 140 18 0 chr13 3992061 3992118 -97881051 + CT-rich Low_complexity Low_complexity 1 58 0 1907 129 14 10 chr13 3992118 3992413 -97880756 - AluSx SINE Alu -4 308 13 183 42 0 0 chr13 3992413 3992437 -97880732 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 2382 98 0 0 chr13 3992442 3992739 -97880430 - AluSx SINE Alu -11 301 5 186 118 0 0 chr13 3994241 3994275 -97878894 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 68 0 0 chr13 3995303 3995347 -97877822 - AluSp/q SINE Alu -36 267 224 1668 128 15 11 chr13 3996867 3997132 -97876037 - Tigger2 DNA MER2_type -10 2708 2443 4549 142 16 19 chr13 3997199 3997947 -97875222 - Tigger2 DNA MER2_type -1972 746 1 213 139 0 0 chr13 3998725 3998768 -97874401 + (TC)n Simple_repeat Simple_repeat 2 44 0 318 111 0 0 chr13 3999619 3999664 -97873505 - L1MA5 LINE L1 -412 5888 5844 2950 260 143 40 chr13 3999664 4001330 -97871839 - L1M4 LINE L1 -768 5378 3540 847 250 14 111 chr13 4001338 4001682 -97871487 + MLT1D-int LTR MaLR 1055 1365 -6 730 176 38 109 chr13 4001691 4001929 -97871240 + MLT1D LTR MaLR 1 221 -284 287 326 45 7 chr13 4001952 4002218 -97870951 + L2 LINE L2 2933 3272 0 202 274 32 0 chr13 4002951 4003013 -97870156 - L2 LINE L2 0 3272 3209 2469 65 13 3 chr13 4003338 4003645 -97869524 - AluY SINE Alu -1 310 1 2191 91 0 60 chr13 4003948 4004267 -97868902 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 4004267 4004292 -97868877 + AT_rich Low_complexity Low_complexity 1 25 0 3077 127 52 2 chr13 4004292 4004787 -97868382 - L1MA3 LINE L1 0 6305 5786 713 93 0 9 chr13 4004887 4004995 -97868174 + L1PA8 LINE L1 6066 6172 0 1985 118 75 31 chr13 4006030 4006379 -97866790 - THE1B LTR MaLR 0 364 1 11518 105 6 1 chr13 4006379 4007952 -97865217 - THE1B-int LTR MaLR 0 1580 1 1586 147 28 28 chr13 4007952 4008237 -97864932 - THE1B LTR MaLR 0 364 80 449 119 81 0 chr13 4008368 4008528 -97864641 + (TA)n Simple_repeat Simple_repeat 1 173 0 474 180 19 1 chr13 4008528 4008632 -97864537 + Tigger4(Zombi) DNA MER2_type 228 2731 0 501 244 12 47 chr13 4008633 4008805 -97864364 + L1ME2 LINE L1 4470 4635 -1511 25 83 0 0 chr13 4008818 4008878 -97864291 + AT_rich Low_complexity Low_complexity 1 60 0 1333 262 33 5 chr13 4008904 4009331 -97863838 + L1ME2 LINE L1 4615 5053 -1093 1258 196 4 43 chr13 4009331 4009612 -97863557 + AluSg SINE Alu 39 308 -2 3182 249 51 8 chr13 4009613 4010682 -97862487 + L1ME2 LINE L1 5031 6153 -11 336 312 109 10 chr13 4010877 4011079 -97862090 + MIR SINE MIR 35 256 -6 199 296 45 61 chr13 4011117 4011249 -97861920 + L2 LINE L2 2932 3061 -211 1511 101 0 10 chr13 4011297 4011506 -97861663 - AluY SINE Alu -10 301 95 342 339 8 0 chr13 4061665 4061792 -97811377 - L2 LINE L2 -708 2606 2479 4061 154 112 96 chr13 4062338 4062632 -97810537 - L1MC3 LINE L1 -7 7778 7490 2070 87 0 4 chr13 4062632 4062909 -97810260 - AluY SINE Alu -15 296 21 4061 154 112 96 chr13 4062909 4063193 -97809976 - L1MC3 LINE L1 -295 7490 7212 347 256 0 0 chr13 4063193 4063275 -97809894 - MLT1F1 LTR MaLR -450 117 36 4061 154 112 96 chr13 4063275 4063672 -97809497 - L1MC3 LINE L1 -573 7212 6704 198 319 104 39 chr13 4063825 4064085 -97809084 + L2 LINE L2 2322 2598 -716 966 300 61 34 chr13 4064545 4064685 -97808484 - L2 LINE L2 -4 3309 3174 1042 181 229 3 chr13 4064685 4064977 -97808192 + MER46B DNA MER2_type 4 236 0 966 300 61 34 chr13 4064977 4065246 -97807923 - L2 LINE L2 -139 3174 2889 688 295 182 12 chr13 4065249 4065568 -97807601 - L2 LINE L2 -973 2341 1969 751 313 40 4 chr13 4065595 4065822 -97807347 - MIR SINE MIR -22 240 6 585 316 73 25 chr13 4065817 4066216 -97806953 - L2 LINE L2 -1332 1982 1565 * 192 307 40 0 chr13 4068395 4068470 -97804699 - MIR3 SINE MIR -24 184 107 591 270 93 31 chr13 4068868 4069096 -97804073 - MIR SINE MIR -10 252 14 258 287 0 0 chr13 4070083 4070226 -97802943 + (TA)n Simple_repeat Simple_repeat 1 143 0 2839 154 19 4 chr13 4072395 4072870 -97800299 - L1PB4 LINE L1 0 6156 5675 1176 171 0 33 chr13 4072871 4073082 -97800087 - AluJo SINE Alu -8 304 101 1838 160 6 25 chr13 4073235 4073553 -97799616 + AluJb SINE Alu 1 312 0 2198 120 13 0 chr13 4074900 4075200 -97797969 + AluSc SINE Alu 1 304 -5 2606 193 38 13 chr13 4078839 4079369 -97793800 - MER44D DNA MER2_type 0 605 8 201 311 194 0 chr13 4079399 4079502 -97793667 - MIR SINE MIR -74 188 66 240 282 0 14 chr13 4080267 4080338 -97792831 - MIR SINE MIR -66 142 73 244 241 0 0 chr13 4080371 4080429 -97792740 + T-rich Low_complexity Low_complexity 1 58 0 208 342 49 60 chr13 4081941 4082371 -97790798 - L2 LINE L2 -6 3266 2842 207 273 75 62 chr13 4083753 4083914 -97789255 + MIR SINE MIR 50 212 -50 437 302 47 31 chr13 4084109 4084367 -97788802 + L3 LINE CR1 1315 1576 -1 269 331 50 14 chr13 4084525 4084664 -97788505 - L3 LINE CR1 -2 1575 1432 186 254 36 0 chr13 4086559 4086614 -97786555 - L2 LINE L2 -2 3311 3255 240 175 63 63 chr13 4088594 4088657 -97784512 - MLT1I LTR MaLR -33 376 314 2539 72 0 0 chr13 4089208 4089515 -97783654 - AluY SINE Alu -4 307 1 212 329 127 0 chr13 4090826 4090905 -97782264 + L2 LINE L2 3147 3235 -37 309 165 16 50 chr13 4090952 4091073 -97782096 + GA-rich Low_complexity Low_complexity 4 120 0 187 281 130 75 chr13 4093106 4093491 -97779678 + L2 LINE L2 2572 2977 -337 472 293 213 10 chr13 4093907 4094207 -97778962 + MLT1J LTR MaLR 1 361 -150 356 274 10 0 chr13 4095142 4095244 -97777925 - MIR SINE MIR -112 150 48 1650 188 38 0 chr13 4095834 4096122 -97777047 + AluJb SINE Alu 5 303 -9 1746 118 57 18 chr13 4099172 4099451 -97773718 - AluSx SINE Alu -10 302 13 231 86 0 29 chr13 4100750 4100785 -97772384 - HAL1 LINE L1 -2188 319 286 2706 127 26 5 chr13 4101650 4102069 -97771100 - MSTA LTR MaLR 0 428 1 259 273 0 45 chr13 4103223 4103311 -97769858 + MER112 DNA MER1_type 144 227 -33 1431 219 95 24 chr13 4105605 4105975 -97767194 + MSTD LTR MaLR 1 396 0 6860 239 35 35 chr13 4105979 4107706 -97765463 + MSTD-int LTR MaLR 4 1730 -5 1310 204 139 14 chr13 4107711 4108063 -97765106 + MSTD LTR MaLR 1 396 0 335 169 14 0 chr13 4108237 4108308 -97764861 + CT-rich Low_complexity Low_complexity 1 72 0 189 0 0 0 chr13 4108308 4108329 -97764840 + (TTTCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr13 4108350 4108379 -97764790 + AT_rich Low_complexity Low_complexity 1 29 0 411 163 25 0 chr13 4109768 4109848 -97763321 - AluS SINE Alu -1 308 227 282 29 0 0 chr13 4109866 4109901 -97763268 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2074 110 0 24 chr13 4109901 4110188 -97762981 - AluSx SINE Alu -32 280 1 264 200 20 60 chr13 4110255 4110355 -97762814 - L1MC5 LINE L1 -48 7913 7818 646 75 0 0 chr13 4110575 4110669 -97762500 - AluY SINE Alu -1 310 217 229 343 75 8 chr13 4111565 4111699 -97761470 + MIR SINE MIR 39 181 -81 3345 187 31 26 chr13 4111962 4112678 -97760491 + LTR62 LTR ERVK 1 719 0 214 282 19 58 chr13 4112945 4113048 -97760121 - MIR SINE MIR -94 114 16 211 343 12 4 chr13 4113956 4114073 -97759096 + MIR SINE MIR 37 154 -67 900 259 34 7 chr13 4115441 4115734 -97757435 + L1M4 LINE L1 2950 3250 -2896 1270 189 95 5 chr13 4116753 4117181 -97755988 - LTR54 LTR ERV1 -1 497 1 25 83 0 0 chr13 4118095 4118155 -97755014 + AT_rich Low_complexity Low_complexity 1 60 0 227 79 26 0 chr13 4119673 4119711 -97753458 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1635 163 13 67 chr13 4119869 4120182 -97752987 + AluJo SINE Alu 13 308 -4 234 323 113 8 chr13 4121439 4121563 -97751606 + MIR SINE MIR 92 228 -34 2104 118 3 3 chr13 4121615 4121911 -97751258 - AluSx SINE Alu -16 296 1 276 255 10 82 chr13 4124066 4124164 -97749005 - MIR SINE MIR -18 244 154 351 113 0 0 chr13 4127601 4127654 -97745515 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 185 18 14 chr13 4127659 4127940 -97745229 - AluJo SINE Alu -30 282 1 3887 60 2 36 chr13 4128751 4129284 -97743885 - L1PA6 LINE L1 -5 6149 5635 564 249 11 28 chr13 4129675 4129852 -97743317 - MLT1A1 LTR MaLR -15 359 186 1016 173 0 12 chr13 4129867 4130040 -97743129 - FRAM SINE Alu -5 171 1 866 160 0 0 chr13 4130048 4130192 -97742977 - MLT1A1 LTR MaLR -220 145 2 206 328 31 0 chr13 4130831 4130895 -97742274 - L2 LINE L2 -70 3202 3137 344 157 41 27 chr13 4132041 4132188 -97740981 + (CA)n Simple_repeat Simple_repeat 1 149 0 346 211 45 30 chr13 4132199 4132332 -97740837 + (CA)n Simple_repeat Simple_repeat 1 135 0 238 172 35 23 chr13 4132345 4132432 -97740737 + (CA)n Simple_repeat Simple_repeat 1 88 0 875 287 137 45 chr13 4134055 4134588 -97738581 - MLT1G1 LTR MaLR 0 595 14 325 342 9 60 chr13 4134777 4134993 -97738176 - MIR3 SINE MIR -55 207 5 240 300 82 17 chr13 4136286 4136519 -97736650 + L1MEd LINE L1 901 1148 -4971 318 302 20 40 chr13 4136659 4136907 -97736262 + HAL1 LINE L1 1427 1669 -838 180 0 0 0 chr13 4137603 4137623 -97735546 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr13 4137632 4137658 -97735511 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2363 73 3 0 chr13 4137661 4137949 -97735220 - AluY SINE Alu -22 289 1 324 351 57 16 chr13 4137961 4138206 -97734963 - L1ME LINE L1 -346 5816 5562 295 301 95 73 chr13 4141230 4141642 -97731527 - L2 LINE L2 -8 3264 2844 26 0 0 0 chr13 4142106 4142132 -97731037 + AT_rich Low_complexity Low_complexity 1 26 0 742 185 64 0 chr13 4142133 4142306 -97730863 - L1MA9 LINE L1 -46 6266 6083 1469 236 87 8 chr13 4142491 4143177 -97729992 + L1ME1 LINE L1 5002 5740 -426 509 244 88 42 chr13 4143272 4143510 -97729659 + L1ME1 LINE L1 5913 6161 -5 332 293 143 7 chr13 4143804 4143951 -97729218 - MIR SINE MIR -3 259 93 1496 274 16 16 chr13 4144222 4144737 -97728432 - L1ME1 LINE L1 -20 6146 5632 524 233 131 64 chr13 4144748 4145311 -97727858 - L1ME LINE L1 -5049 1034 459 234 111 19 56 chr13 4145452 4145506 -97727663 - L1ME LINE L1 -5685 385 334 202 205 26 0 chr13 4145628 4145667 -97727502 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 4146468 4146490 -97726679 + AT_rich Low_complexity Low_complexity 1 22 0 678 329 49 23 chr13 4147341 4147645 -97725524 - L2 LINE L2 -4 3309 2998 253 212 96 111 chr13 4148159 4148357 -97724812 - MLT1J LTR MaLR -193 318 124 1327 227 79 67 chr13 4148398 4148932 -97724237 + MLT1F1 LTR MaLR 3 567 0 441 256 140 43 chr13 4149830 4149954 -97723215 - MIR SINE MIR -16 246 135 2166 121 7 7 chr13 4149954 4150261 -97722908 + AluSq SINE Alu 1 307 -6 441 256 140 43 chr13 4150261 4150343 -97722826 - MIR SINE MIR -127 135 20 553 309 45 22 chr13 4151457 4151680 -97721489 + MIR SINE MIR 35 262 0 323 381 23 23 chr13 4151693 4151866 -97721303 - MIR SINE MIR -71 191 19 23 0 0 0 chr13 4151924 4151947 -97721222 + AT_rich Low_complexity Low_complexity 1 23 0 613 348 163 12 chr13 4152643 4153227 -97719942 - L3 LINE CR1 -5 1572 901 358 117 0 39 chr13 4153269 4153346 -97719823 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 192 305 136 24 chr13 4153347 4153560 -97719609 - L3 LINE CR1 -701 876 640 609 291 110 89 chr13 4154115 4154805 -97718364 + HAL1 LINE L1 897 1608 -899 2293 93 0 7 chr13 4154805 4155105 -97718064 - AluSx SINE Alu -14 298 1 609 291 110 89 chr13 4155105 4155221 -97717948 + HAL1 LINE L1 1608 1720 -787 265 279 158 36 chr13 4155893 4156223 -97716946 + L1M4 LINE L1 2650 3019 -3127 541 352 109 28 chr13 4156256 4156759 -97716410 - L3 LINE CR1 -881 696 153 180 0 0 0 chr13 4156876 4156896 -97716273 + (T)n Simple_repeat Simple_repeat 1 20 0 231 302 73 10 chr13 4157167 4157263 -97715906 - L2 LINE L2 -34 3279 3178 2273 105 26 0 chr13 4160234 4160538 -97712631 + AluSx SINE Alu 1 312 0 335 298 19 10 chr13 4161280 4161384 -97711785 - MER5B DNA MER1_type -73 105 1 2253 186 21 5 chr13 4162128 4162547 -97710622 - MSTB LTR MaLR 0 426 1 514 311 45 70 chr13 4163643 4164091 -97709078 + L1M4 LINE L1 2853 3289 -2857 205 75 50 0 chr13 4165424 4165464 -97707705 + GA-rich Low_complexity Low_complexity 2 43 0 450 0 0 0 chr13 4165468 4165518 -97707651 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 0 0 0 chr13 4166080 4166126 -97707043 + (CA)n Simple_repeat Simple_repeat 2 47 0 247 111 0 0 chr13 4166144 4166180 -97706989 + MLT2C2 LTR ERVL 429 464 0 2134 207 32 22 chr13 4166180 4166717 -97706452 - L1MB7 LINE L1 -256 6164 5623 * 5249 242 88 42 chr13 4166715 4167067 -97706102 - L1MB7 LINE L1 -2002 4380 4046 1543 203 3 20 chr13 4167067 4167362 -97705807 + AluJo SINE Alu 1 290 -22 5249 242 88 42 chr13 4167362 4171011 -97702158 - L1MB7 LINE L1 -2336 4046 68 405 0 0 0 chr13 4171011 4171056 -97702113 + (TG)n Simple_repeat Simple_repeat 2 46 0 5249 242 88 42 chr13 4171056 4171126 -97702043 - L1MB7 LINE L1 -6314 68 3 202 259 17 0 chr13 4172703 4172761 -97700408 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 347 0 16 chr13 4173818 4173939 -97699230 + CT-rich Low_complexity Low_complexity 4 122 0 1085 207 95 0 chr13 4174319 4174573 -97698596 - MER110 LTR ERV1 -172 319 1 1257 246 163 20 chr13 4175371 4175777 -97697392 + L3 LINE CR1 1111 1574 -3 4390 187 48 14 chr13 4176128 4177026 -97696143 - L1MA7 LINE L1 -32 6259 5332 241 296 65 19 chr13 4177104 4177212 -97695957 + L2 LINE L2 3099 3211 -61 897 214 67 0 chr13 4178736 4178937 -97694232 + AluJo SINE Alu 96 308 0 219 184 0 41 chr13 4179530 4179579 -97693590 + CT-rich Low_complexity Low_complexity 4 50 0 21 0 0 0 chr13 4179928 4179949 -97693220 + AT_rich Low_complexity Low_complexity 1 21 0 422 296 122 13 chr13 4181168 4181398 -97691771 + MIR SINE MIR 7 261 -1 186 353 50 34 chr13 4181422 4181541 -97691628 - L2 LINE L2 -193 3079 2959 1196 305 117 54 chr13 4181620 4182770 -97690399 - L2 LINE L2 -444 2870 1611 345 47 0 0 chr13 4182770 4182813 -97690356 + (TG)n Simple_repeat Simple_repeat 2 44 0 1196 305 117 54 chr13 4182813 4183087 -97690082 - L2 LINE L2 -1703 1611 1356 590 262 43 0 chr13 4183120 4183284 -97689885 - MIR SINE MIR -3 259 89 2830 236 85 29 chr13 4183657 4183864 -97689305 - L1ME1 LINE L1 -5 6161 5967 1922 198 3 40 chr13 4183864 4184243 -97688926 - MLT1A1 LTR MaLR 0 365 1 2830 236 85 29 chr13 4184243 4185761 -97687408 - L1ME1 LINE L1 -199 5967 4358 * 3031 186 43 9 chr13 4185745 4186389 -97686780 - L1MC3 LINE L1 0 7785 7120 284 213 11 43 chr13 4186436 4186530 -97686639 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2987 85 28 5 chr13 4186533 4186933 -97686236 - MLT2A2 LTR ERVL -44 409 1 8573 186 44 35 chr13 4186933 4187933 -97685236 - L1MC3 LINE L1 -660 7125 6099 3244 133 54 4 chr13 4187933 4188437 -97684732 - L1PB1 LINE L1 -3 6148 5620 8573 186 44 35 chr13 4188437 4189291 -97683878 - L1MC3 LINE L1 -1686 6099 5254 9333 35 10 3 chr13 4189338 4191189 -97681980 - L1PA3 LINE L1 -2 6153 4293 331 322 119 30 chr13 4192647 4192849 -97680320 - MIR SINE MIR -33 229 10 205 371 36 29 chr13 4192876 4193016 -97680153 + MER91A DNA MER1_type 1 141 -55 24 0 0 0 chr13 4195048 4195072 -97678097 + AT_rich Low_complexity Low_complexity 1 24 0 235 242 150 105 chr13 4197378 4197485 -97675684 - MER5B DNA MER1_type -17 161 43 2504 54 0 0 chr13 4197485 4197781 -97675388 + AluY SINE Alu 1 296 -15 235 242 150 105 chr13 4197781 4197826 -97675343 - MER5B DNA MER1_type -135 43 2 504 232 87 53 chr13 4198774 4198981 -97674188 - MLT1K LTR MaLR -9 579 366 374 169 0 0 chr13 4200780 4200845 -97672324 + Alu SINE Alu 235 299 -3 503 248 24 8 chr13 4201504 4201629 -97671540 - Charlie4 DNA MER1_type -12 1949 1823 385 273 76 35 chr13 4201704 4201902 -97671267 - LTR33 LTR ERVL -1 520 315 23 33 0 0 chr13 4202604 4202634 -97670535 + AT_rich Low_complexity Low_complexity 1 30 0 883 207 35 101 chr13 4204717 4205084 -97668085 - LTR37A LTR ERV1 0 426 84 239 305 17 44 chr13 4205222 4205393 -97667776 - MIR SINE MIR -21 241 3 23 0 0 0 chr13 4205712 4205735 -97667434 + AT_rich Low_complexity Low_complexity 1 23 0 627 211 57 51 chr13 4206722 4206897 -97666272 - MER63A DNA MER1_type -33 177 2 229 257 0 43 chr13 4206904 4206974 -97666195 + L2 LINE L2 3247 3313 0 232 253 172 20 chr13 4207159 4207258 -97665911 - MIR SINE MIR -112 150 37 180 258 45 30 chr13 4209139 4209205 -97663964 - L2 LINE L2 -1046 2268 2202 2096 152 35 11 chr13 4209946 4210321 -97662848 - MLT1B LTR MaLR 0 390 7 663 315 104 41 chr13 4211029 4211492 -97661677 - MLT1J LTR MaLR 0 511 20 2399 176 94 4 chr13 4212461 4212973 -97660196 + MER74A LTR ERVL 1 558 0 233 264 110 22 chr13 4212973 4213064 -97660105 + L2 LINE L2 3212 3310 -3 2211 100 10 0 chr13 4213465 4213577 -97659592 + AluSg SINE Alu 13 122 -188 243 0 0 0 chr13 4213577 4213604 -97659565 + (CA)n Simple_repeat Simple_repeat 2 28 0 2211 100 10 0 chr13 4213604 4213781 -97659388 + AluSg SINE Alu 122 305 -5 350 286 43 31 chr13 4216088 4216249 -97656920 - L3 LINE CR1 -35 1542 1380 494 317 81 52 chr13 4216353 4216738 -97656431 - L3 LINE CR1 -262 1315 920 2092 125 10 0 chr13 4217008 4217303 -97655866 + AluSx SINE Alu 1 298 -14 2488 69 0 19 chr13 4219436 4219753 -97653416 + AluY SINE Alu 1 311 0 209 238 16 16 chr13 4219768 4219831 -97653338 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 219 125 0 0 chr13 4220195 4220235 -97652934 + (TTAGGG)n Simple_repeat Simple_repeat 1 40 0 884 206 111 16 chr13 4220293 4220546 -97652623 - MER58B DNA MER1_type -9 332 56 2267 103 0 16 chr13 4220752 4221062 -97652107 - AluSg SINE Alu -5 305 1 2180 104 24 7 chr13 4221072 4221369 -97651800 - AluSg SINE Alu -8 302 1 311 350 51 10 chr13 4276366 4276563 -97596606 + L3 LINE CR1 685 889 -688 2144 116 0 3 chr13 4276585 4276894 -97596275 + AluSx SINE Alu 1 308 0 379 179 0 48 chr13 4277108 4277192 -97595977 - MIR SINE MIR -115 147 68 423 238 12 133 chr13 4277342 4277380 -97595789 + MIR SINE MIR 19 60 -202 2662 162 0 0 chr13 4277380 4277781 -97595388 + MER57A LTR ERV1 3 403 0 423 238 12 133 chr13 4277781 4277982 -97595187 + MIR SINE MIR 60 229 -33 432 284 112 0 chr13 4278471 4278587 -97594582 - L2 LINE L2 0 3272 3144 184 288 68 17 chr13 4279110 4279169 -97594000 + MER5B DNA MER1_type 80 141 -37 198 344 0 0 chr13 4281909 4281973 -97591196 + L2 LINE L2 3250 3313 0 338 264 181 28 chr13 4282428 4282572 -97590597 - MER5A DNA MER1_type 0 189 24 1677 171 33 26 chr13 4282636 4282941 -97590228 - AluJo SINE Alu -1 311 5 852 194 0 0 chr13 4285183 4285411 -97587758 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 1804 143 0 21 chr13 4286560 4286840 -97586329 + AluJb SINE Alu 9 282 -30 368 276 72 72 chr13 4287876 4288057 -97585112 - MIR SINE MIR -56 206 26 258 32 0 0 chr13 4289589 4289620 -97583549 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 396 59 0 0 chr13 4290359 4290410 -97582759 + (TG)n Simple_repeat Simple_repeat 1 51 0 203 309 229 29 chr13 4291417 4291592 -97581577 - MIR SINE MIR -7 255 46 224 293 0 0 chr13 4292234 4292292 -97580877 - L2 LINE L2 -97 3216 3159 390 234 0 0 chr13 4292351 4292505 -97580664 + (TG)n Simple_repeat Simple_repeat 1 154 0 819 196 68 0 chr13 4292644 4292807 -97580362 + MIR SINE MIR 67 240 -22 249 36 0 0 chr13 4293524 4293552 -97579617 - LTR1 LTR ERV1 0 785 758 490 248 16 31 chr13 4293599 4293728 -97579441 - HUERS-P2 LTR ERV1 -2961 127 1 3781 121 65 67 chr13 4293728 4294503 -97578666 - LTR1 LTR ERV1 0 785 13 601 205 6 99 chr13 4295252 4295423 -97577746 + MER63 DNA MER1_type 1 781 -281 666 103 45 13 chr13 4295596 4295752 -97577417 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 201 270 124 0 chr13 4295753 4295842 -97577327 + MIR3 SINE MIR 103 202 -6 501 275 84 0 chr13 4295922 4296100 -97577069 + L2 LINE L2 3112 3304 -9 389 349 23 0 chr13 4296116 4296245 -97576924 - MIR3 SINE MIR -62 146 15 223 317 108 36 chr13 4296617 4296784 -97576385 - L2 LINE L2 -24 3289 3111 549 192 144 0 chr13 4298551 4298676 -97574493 + LTR54B LTR ERV1 1 143 -355 1230 149 18 18 chr13 4298703 4298925 -97574244 + LTR54 LTR ERV1 289 510 0 464 129 26 17 chr13 4299635 4299751 -97573418 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 457 176 0 0 chr13 4299753 4299838 -97573331 + (TATG)n Simple_repeat Simple_repeat 2 86 0 267 271 14 0 chr13 4300277 4300347 -97572822 + L2 LINE L2 3240 3310 -3 736 261 14 21 chr13 4300446 4300778 -97572391 - MLT1A2 LTR MaLR 0 374 1 306 339 43 0 chr13 4301552 4301667 -97571502 - MER91C DNA MER1_type 0 140 21 708 316 95 17 chr13 4301887 4302359 -97570810 + LTR33 LTR ERVL 13 521 0 195 263 0 0 chr13 4302651 4302689 -97570480 + L2 LINE L2 3184 3221 -92 1346 146 175 5 chr13 4303238 4303646 -97569523 + MER44D DNA MER2_type 1 536 -69 1986 204 123 82 chr13 4303648 4304363 -97568806 + LTR1B LTR ERV1 2 745 -81 536 100 0 50 chr13 4304448 4304528 -97568641 + MER44D DNA MER2_type 530 605 0 623 268 127 53 chr13 4304675 4305220 -97567949 - L1MC4 LINE L1 -1 8041 7457 2368 85 7 0 chr13 4306003 4306310 -97566859 - AluY SINE Alu -2 309 1 403 234 82 68 chr13 4306365 4306794 -97566375 + MER52A LTR ERV1 1 572 -706 1771 135 4 29 chr13 4306958 4307239 -97565930 - AluSx SINE Alu -38 274 1 189 0 0 0 chr13 4308517 4308538 -97564631 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 94 17 chr13 4309115 4309295 -97563874 + MIR SINE MIR 4 197 -65 306 73 0 0 chr13 4309333 4309374 -97563795 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2010 94 72 0 chr13 4309377 4309642 -97563527 - AluSx SINE Alu -28 284 1 22 0 0 0 chr13 4309642 4309664 -97563505 + AT_rich Low_complexity Low_complexity 1 22 0 295 117 11 43 chr13 4309874 4309968 -97563201 + (TA)n Simple_repeat Simple_repeat 2 92 0 606 281 21 0 chr13 4311038 4311276 -97561893 - L1MDa LINE L1 -2967 3573 3331 * 10445 214 57 21 chr13 4311256 4314064 -97559105 - L1MDa LINE L1 -3616 2924 17 341 278 46 0 chr13 4314269 4314377 -97558792 - MIR SINE MIR -71 191 79 1252 264 71 23 chr13 4314602 4315041 -97558128 + LTR40c LTR ERVL 1 460 -5 291 28 0 0 chr13 4315393 4315429 -97557740 + (T)n Simple_repeat Simple_repeat 1 36 0 200 122 0 24 chr13 4316217 4316258 -97556911 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 90 0 13 chr13 4317326 4317636 -97555533 + AluY SINE Alu 1 306 -5 23 0 0 0 chr13 4318301 4318324 -97554845 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 4318704 4318727 -97554442 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 245 0 41 chr13 4319333 4319382 -97553787 - L2 LINE L2 -16 3256 3210 292 250 0 0 chr13 4320547 4320607 -97552562 - L2 LINE L2 0 3313 3254 30 0 0 0 chr13 4320706 4320736 -97552433 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 4320855 4320905 -97552264 + AT_rich Low_complexity Low_complexity 1 50 0 728 209 0 7 chr13 4321014 4321167 -97552002 - MLT1A1 LTR MaLR -213 152 1 584 296 21 34 chr13 4321326 4321559 -97551610 + MLT1J1 LTR MaLR 206 435 -11 1235 255 77 17 chr13 4321821 4322076 -97551093 - MLT1C LTR MaLR 0 467 178 378 0 0 0 chr13 4322076 4322118 -97551051 + (TG)n Simple_repeat Simple_repeat 2 43 0 1235 255 77 17 chr13 4322118 4322266 -97550903 - MLT1C LTR MaLR -289 178 40 238 203 0 17 chr13 4322878 4322937 -97550232 + MLT1J2 LTR MaLR 369 426 -24 289 285 115 33 chr13 4322969 4323081 -97550088 - L1ME LINE L1 -336 5785 5684 1786 104 4 4 chr13 4323081 4323321 -97549848 - AluSg/x SINE Alu 0 312 73 * 2346 74 0 17 chr13 4323319 4323618 -97549551 - AluY SINE Alu -17 294 1 289 285 115 33 chr13 4323618 4323776 -97549393 - L1ME LINE L1 -734 5387 5494 642 335 97 36 chr13 4323837 4324446 -97548723 + L2 LINE L2 1784 2429 -885 1134 260 142 21 chr13 4324511 4324977 -97548192 + MLT1E LTR MaLR 72 593 0 2139 118 3 22 chr13 4326472 4326786 -97546383 - AluSx SINE Alu -4 308 1 647 233 39 24 chr13 4326929 4327135 -97546034 + MER3 DNA MER1_type 1 209 0 181 229 0 0 chr13 4327242 4327277 -97545892 - L2 LINE L2 -20 3293 3259 390 74 0 0 chr13 4328831 4328885 -97544284 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 646 209 43 6 chr13 4330355 4330518 -97542651 + MER5A DNA MER1_type 3 171 -18 321 343 70 29 chr13 4330514 4330686 -97542483 + MIR SINE MIR 63 241 -21 * 297 258 258 0 chr13 4331266 4331355 -97541814 + MER5A DNA MER1_type 49 160 -29 207 291 70 57 chr13 4332225 4332383 -97540786 + MIR SINE MIR 93 252 -10 798 215 97 45 chr13 4334237 4334525 -97538644 + L1MDb LINE L1 43 345 -6064 304 327 60 33 chr13 4334788 4335207 -97537962 + L1M4 LINE L1 3786 4215 -1931 272 248 88 9 chr13 4335401 4335414 -97537755 - L1M4 LINE L1 -1302 4844 4833 2398 84 3 0 chr13 4335414 4335712 -97537457 - AluY SINE Alu -12 299 1 272 248 88 9 chr13 4335712 4335811 -97537358 - L1M4 LINE L1 -1313 4833 4723 23 33 0 0 chr13 4336181 4336211 -97536958 + AT_rich Low_complexity Low_complexity 1 30 0 535 183 148 0 chr13 4336696 4336811 -97536358 - FLAM_A SINE Alu -1 132 1 2314 202 127 33 chr13 4336960 4337803 -97535366 - MER69 DNA AcHobo -49 2477 1556 462 307 76 71 chr13 4337804 4338119 -97535050 + L2 LINE L2 2687 3010 -303 1372 191 25 86 chr13 4338119 4338443 -97534726 - AluJo SINE Alu -8 304 1 462 307 76 71 chr13 4338443 4338707 -97534462 + L2 LINE L2 3010 3271 -42 278 293 35 9 chr13 4338802 4338918 -97534251 - MER103 DNA DNA -45 121 3 549 350 120 19 chr13 4339098 4339524 -97533645 - L2 LINE L2 0 3272 2804 23 33 0 0 chr13 4340653 4340683 -97532486 + AT_rich Low_complexity Low_complexity 1 30 0 476 150 20 30 chr13 4340692 4340792 -97532377 - L1MA5 LINE L1 -2 6298 6200 231 356 58 19 chr13 4341641 4341668 -97531501 + L2 LINE L2 3154 3178 -94 2390 126 22 0 chr13 4341668 4342024 -97531145 - THE1B LTR MaLR 0 364 1 231 356 58 19 chr13 4342024 4342100 -97531069 + L2 LINE L2 3178 3261 -11 942 280 59 42 chr13 4342119 4342590 -97530579 - LTR16C LTR ERVL -9 482 4 3567 243 29 28 chr13 4342696 4343818 -97529351 - L1M4 LINE L1 -1209 4937 3814 3453 189 18 49 chr13 4343818 4344509 -97528660 + L1MB5 LINE L1 5160 5821 -353 2404 78 0 13 chr13 4344509 4344818 -97528351 + AluY SINE Alu 1 305 -6 3453 189 18 49 chr13 4344818 4345114 -97528055 + L1MB5 LINE L1 5821 6125 -49 309 260 75 12 chr13 4346537 4346710 -97526459 - L1ME4a LINE L1 -98 6023 5840 21 0 0 0 chr13 4346753 4346774 -97526395 + AT_rich Low_complexity Low_complexity 1 21 0 237 240 13 0 chr13 4346954 4347029 -97526140 - L1M4 LINE L1 -3959 2187 2112 1240 153 0 0 chr13 4347164 4347367 -97525802 - L1PA13 LINE L1 -3 6160 5958 2358 169 46 26 chr13 4347636 4348134 -97525035 - L1MC1 LINE L1 -6 6327 5820 1811 152 34 9 chr13 4348142 4348465 -97524704 - L1MC1 LINE L1 -562 5771 5441 948 202 23 43 chr13 4348467 4348724 -97524445 + MSTD LTR MaLR 145 396 0 290 289 13 13 chr13 4349525 4349601 -97523568 - MIR SINE MIR -159 103 28 2440 69 0 28 chr13 4351562 4351879 -97521290 - AluY SINE Alu -3 308 1 298 243 56 56 chr13 4353442 4353549 -97519620 - L2 LINE L2 0 3313 3207 843 202 10 30 chr13 4353687 4353890 -97519279 - MER3 DNA MER1_type -9 200 2 638 280 69 13 chr13 4354228 4354460 -97518709 - L2 LINE L2 -1 3312 3068 1412 259 120 30 chr13 4354460 4355008 -97518161 - L1MEc LINE L1 -3706 2509 2012 1801 103 118 8 chr13 4355008 4355270 -97517899 - AluSg1 SINE Alu -18 291 1 1412 259 120 30 chr13 4355270 4355822 -97517347 - L1MEc LINE L1 -4203 2012 1511 2583 123 5 0 chr13 4355822 4356195 -97516974 - THE1C LTR MaLR 0 375 1 10221 115 45 3 chr13 4356195 4357711 -97515458 - THE1C-int LTR MaLR 0 1580 1 2631 106 3 13 chr13 4357712 4358090 -97515079 - THE1C LTR MaLR -1 374 1 1412 259 120 30 chr13 4358090 4358153 -97515016 - L1MEc LINE L1 -4703 1512 1283 1552 188 14 17 chr13 4358153 4358445 -97514724 + AluJb SINE Alu 1 291 -21 574 304 80 30 chr13 4358588 4358953 -97514216 - L2 LINE L2 -824 2490 2108 2093 249 37 22 chr13 4359118 4359195 -97513974 - L1M4 LINE L1 -1816 4828 4754 192 77 0 0 chr13 4359195 4359221 -97513948 + (TG)n Simple_repeat Simple_repeat 2 27 0 2093 249 37 22 chr13 4359221 4359897 -97513272 - L1M4 LINE L1 -1890 4754 4064 1144 204 84 62 chr13 4359897 4360300 -97512869 - MLT1C LTR MaLR 0 467 56 519 273 32 16 chr13 4360343 4360592 -97512577 - L1M4 LINE L1 -2575 4069 3817 * 6242 70 6 30 chr13 4360562 4361474 -97511695 - L1PA7 LINE L1 -3 6649 5760 648 239 44 0 chr13 4361468 4361648 -97511521 - L1M4 LINE L1 -6353 189 2 * 283 370 0 16 chr13 4362215 4362342 -97510827 - MIR3 SINE MIR -6 202 78 290 230 103 23 chr13 4362665 4362752 -97510417 - L2 LINE L2 -10 3262 3169 188 214 71 0 chr13 4363240 4363282 -97509887 - L2 LINE L2 -2 3311 3267 1255 202 77 36 chr13 4364730 4365121 -97508048 + MLT1C LTR MaLR 60 466 -1 477 260 3 39 chr13 4366067 4366397 -97506772 + CT-rich Low_complexity Low_complexity 1 318 0 7027 54 22 0 chr13 4366513 4367443 -97505726 - L1PA7 LINE L1 -4 6150 5215 11575 127 7 36 chr13 4367443 4370516 -97502653 - L1P3 LINE L1 -3393 3068 12 21 36 0 0 chr13 4370517 4370545 -97502624 + AT_rich Low_complexity Low_complexity 1 28 0 515 100 11 11 chr13 4372391 4372481 -97500688 - L1MB8 LINE L1 0 6178 6089 3356 175 45 7 chr13 4372496 4373205 -97499964 - L1MB4 LINE L1 -6 6174 5439 217 237 129 21 chr13 4373421 4373514 -97499655 + MIR SINE MIR 150 252 -10 2368 72 7 3 chr13 4375399 4375691 -97497478 + AluSq SINE Alu 1 293 -20 1216 126 37 0 chr13 4375744 4375934 -97497235 + MER30 DNA MER1_type 1 197 -33 914 231 114 70 chr13 4378031 4378460 -97494709 + LTR37B LTR ERV1 21 468 0 38 39 0 0 chr13 4378761 4378813 -97494356 + AT_rich Low_complexity Low_complexity 1 52 0 238 329 14 0 chr13 4378960 4379033 -97494136 - L2 LINE L2 -206 3066 2993 320 161 81 0 chr13 4380221 4380235 -97492934 - MER46A DNA MER2_type -73 163 145 13965 142 19 107 chr13 4380235 4382570 -97490599 + Tigger4(Zombi) DNA MER2_type 1 2016 -715 2538 20 20 0 chr13 4382570 4382871 -97490298 + L1PA2 LINE L1 5846 6155 0 13965 142 19 107 chr13 4382871 4383529 -97489640 + Tigger4(Zombi) DNA MER2_type 2016 2730 -1 755 163 7 7 chr13 4383687 4383822 -97489347 + Tigger4(Zombi) DNA MER2_type 1803 1937 -794 333 321 52 33 chr13 4383858 4384070 -97489099 + L1MEc LINE L1 1304 1519 -4877 335 219 30 116 chr13 4384367 4384531 -97488638 + L1MEc LINE L1 2217 2366 -3849 405 204 176 19 chr13 4384569 4384677 -97488492 - L2 LINE L2 -2 3311 3187 403 319 95 51 chr13 4384850 4385239 -97487930 - LTR33 LTR ERVL -11 510 105 316 285 68 82 chr13 4385311 4385592 -97487577 + L1MEc LINE L1 3062 3338 -2877 692 347 34 9 chr13 4385862 4386185 -97486984 + MLT1J LTR MaLR 71 401 -110 1867 121 0 4 chr13 4386699 4386955 -97486214 + AluSx SINE Alu 35 289 -23 499 313 72 24 chr13 4387107 4387442 -97485727 + L1MEc LINE L1 118 468 -5928 * 1725 268 44 40 chr13 4387427 4388425 -97484744 + L1MEc LINE L1 2545 3546 -2669 862 237 68 22 chr13 4388430 4388708 -97484461 - L1MB8 LINE L1 0 6178 5888 2653 201 22 30 chr13 4388711 4389627 -97483542 - L1MB8 LINE L1 -428 5756 4854 2018 107 0 58 chr13 4389627 4389937 -97483232 + AluSx SINE Alu 1 292 -20 2653 201 22 30 chr13 4389937 4390130 -97483039 - L1MB8 LINE L1 -1330 4854 4661 4353 195 70 6 chr13 4390130 4390972 -97482197 - MER54A LTR ERVL -5 896 1 336 152 45 125 chr13 4390978 4391090 -97482079 - L1MB8 LINE L1 -1482 4664 4562 2053 149 97 20 chr13 4391092 4391482 -97481687 + MSTA LTR MaLR 9 428 0 8225 159 33 57 chr13 4391487 4391951 -97481218 + MSTA-int LTR MaLR 6 480 -1100 2789 22 0 0 chr13 4391951 4392262 -97480907 + AluYa5 SINE Alu 1 311 0 8225 159 33 57 chr13 4392262 4393411 -97479758 + MSTA-int LTR MaLR 480 1580 0 2169 134 84 22 chr13 4393411 4393814 -97479355 + MSTA LTR MaLR 1 428 0 1815 237 18 27 chr13 4393814 4394363 -97478806 - L1MB8 LINE L1 -1582 4564 4021 213 39 0 0 chr13 4394368 4394394 -97478775 + (TG)n Simple_repeat Simple_repeat 2 27 0 10300 159 9 3 chr13 4394429 4396426 -97476743 + L1P4 LINE L1 3511 5515 -653 883 214 0 6 chr13 4396437 4396610 -97476559 - AluJb SINE Alu -25 287 116 1497 196 58 58 chr13 4396610 4397038 -97476131 + L1ME1 LINE L1 5510 6079 -255 2799 19 0 0 chr13 4397038 4397348 -97475821 + AluYa5 SINE Alu 1 310 -1 1497 196 58 58 chr13 4397348 4397595 -97475574 + L1ME1 LINE L1 6079 6325 -9 1356 229 38 24 chr13 4397599 4397939 -97475230 + MLT1A1 LTR MaLR 3 347 -18 522 271 21 0 chr13 4398013 4398201 -97474968 + L1ME1 LINE L1 2189 2380 -3766 1037 184 68 138 chr13 4398201 4398598 -97474571 - LOR1a LTR ERV1 -13 484 116 2035 284 65 12 chr13 4398629 4399684 -97473485 + L1ME1 LINE L1 2375 3485 -2661 43168 48 5 0 chr13 4399699 4405824 -97467345 + L1PA4 LINE L1 4 6155 0 3279 260 115 24 chr13 4405839 4406097 -97467072 + L1ME1 LINE L1 3497 3730 -2436 2200 79 4 0 chr13 4406097 4406375 -97466794 + AluY SINE Alu 19 297 -14 3279 260 115 24 chr13 4406375 4408548 -97464621 + L1ME1 LINE L1 3730 6131 -35 2154 75 11 4 chr13 4409017 4409327 -97463842 + AluY SINE Alu 1 312 0 23 0 0 0 chr13 4410187 4410210 -97462959 + AT_rich Low_complexity Low_complexity 1 23 0 1441 149 52 45 chr13 4410338 4410647 -97462522 - L1MA9 LINE L1 -5 6307 5997 28 0 0 0 chr13 4411151 4411179 -97461990 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 4411836 4411864 -97461305 + AT_rich Low_complexity Low_complexity 1 28 0 2411 65 3 0 chr13 4411864 4412156 -97461013 + AluSp SINE Alu 1 293 -20 8184 169 24 51 chr13 4412159 4414699 -97458470 - L1MA4 LINE L1 -8 6292 3827 5936 23 0 0 chr13 4414699 4415386 -97457783 - L1PA2 LINE L1 -2 6153 5467 8184 169 24 51 chr13 4415386 4415659 -97457510 - L1MA4 LINE L1 -2473 3827 3548 10241 181 16 2 chr13 4415669 4418388 -97454781 + L1PA13 LINE L1 3428 6163 0 5365 166 45 16 chr13 4418388 4418897 -97454272 + L1MA5 LINE L1 4325 4818 -1482 1119 169 29 14 chr13 4418897 4419104 -97454065 - MER6B DNA MER2_type 0 210 1 5365 166 45 16 chr13 4419104 4420513 -97452656 + L1MA5 LINE L1 4818 6299 -1 25 31 0 0 chr13 4420668 4420700 -97452469 + AT_rich Low_complexity Low_complexity 1 32 0 228 35 0 0 chr13 4421507 4421536 -97451633 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 88 0 0 chr13 4422401 4422435 -97450734 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4146 129 9 5 chr13 4422624 4423274 -97449895 - MER39B LTR ERV1 0 653 1 1015 211 106 116 chr13 4423348 4423944 -97449225 + LTR49 LTR ERV1 5 594 -1 2044 161 36 28 chr13 4424825 4425185 -97447984 - THE1B LTR MaLR -1 363 1 11175 107 14 0 chr13 4425185 4426744 -97446425 - THE1B-int LTR MaLR 0 1580 1 2177 138 33 25 chr13 4426744 4427105 -97446064 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 4427170 4427202 -97445967 + AT_rich Low_complexity Low_complexity 1 32 0 733 204 41 0 chr13 4427675 4427822 -97445347 + MLT1J2 LTR MaLR 16 168 -282 492 251 32 70 chr13 4427861 4428048 -97445121 + MLT1J2 LTR MaLR 245 424 -26 24 53 0 0 chr13 4429414 4429452 -97443717 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 4430094 4430115 -97443054 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr13 4430479 4430525 -97442644 + (TG)n Simple_repeat Simple_repeat 2 47 0 309 290 74 79 chr13 4431582 4431961 -97441208 + L1MDa LINE L1 1039 1415 -5125 1608 299 176 18 chr13 4431973 4432745 -97440424 + L1M4b LINE L1 374 1267 -5592 1544 190 83 21 chr13 4432753 4433126 -97440043 + MSTD LTR MaLR 1 396 0 312 27 0 0 chr13 4433362 4433399 -97439770 + (TTA)n Simple_repeat Simple_repeat 3 39 0 14588 32 1 1 chr13 4433399 4435896 -97437273 - L1PA4 LINE L1 -18 6137 3636 2274 77 7 0 chr13 4437935 4438222 -97434947 + AluSp SINE Alu 14 302 -11 2650 42 0 0 chr13 4438540 4438846 -97434323 - AluY SINE Alu -5 306 1 232 259 19 0 chr13 4438889 4438997 -97434172 + (TA)n Simple_repeat Simple_repeat 1 110 0 262 336 118 50 chr13 4439229 4439586 -97433583 - L2 LINE L2 -12 3301 2921 582 254 57 89 chr13 4440327 4440820 -97432349 + MLT1H LTR MaLR 39 595 0 425 131 12 0 chr13 4441485 4441569 -97431600 + CT-rich Low_complexity Low_complexity 2 86 0 584 347 98 23 chr13 4441609 4442047 -97431122 + L3 LINE CR1 916 1386 -191 21 0 0 0 chr13 4442685 4442706 -97430463 + AT_rich Low_complexity Low_complexity 1 21 0 585 287 35 17 chr13 4444705 4444879 -97428290 + MIR SINE MIR 36 212 -50 491 266 167 27 chr13 4445452 4445674 -97427495 + MIR SINE MIR 10 262 0 258 268 0 0 chr13 4445883 4445995 -97427174 + (TA)n Simple_repeat Simple_repeat 2 113 0 241 318 0 0 chr13 4446805 4446868 -97426301 - L3b LINE CR1 -139 1444 1382 2351 92 6 13 chr13 4447293 4447608 -97425561 + AluSp SINE Alu 1 313 0 709 279 107 38 chr13 4447704 4448356 -97424813 + L1ME4a LINE L1 5278 5974 -147 280 290 6 0 chr13 4449044 4449129 -97424040 - MIR3 SINE MIR -22 186 100 189 255 0 39 chr13 4449214 4449265 -97423904 - L3 LINE CR1 -603 974 926 601 347 73 29 chr13 4450258 4450736 -97422433 + L2 LINE L2 2808 3306 -7 1337 189 184 19 chr13 4451531 4451954 -97421215 + LTR54B LTR ERV1 2 494 -4 23 54 0 0 chr13 4452074 4452111 -97421058 + AT_rich Low_complexity Low_complexity 1 37 0 306 330 78 35 chr13 4452587 4452869 -97420300 - L1ME LINE L1 -502 6117 5824 244 258 48 0 chr13 4453067 4453129 -97420040 - MIR SINE MIR -67 141 77 222 200 0 0 chr13 4454353 4454393 -97418776 + CT-rich Low_complexity Low_complexity 2 41 0 587 226 43 24 chr13 4454548 4454712 -97418457 - MER96B DNA MER1_type? -238 179 13 2622 36 0 0 chr13 4455752 4456053 -97417116 - AluY SINE Alu -10 301 1 240 216 284 11 chr13 4457968 4458056 -97415113 + L2 LINE L2 3199 3310 -3 23 0 0 0 chr13 4458075 4458098 -97415071 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 78 35 chr13 4460405 4460521 -97412648 - MIR SINE MIR -70 138 18 290 136 0 0 chr13 4462319 4462363 -97410806 + L1PBa LINE L1 2443 2486 -4377 705 146 88 0 chr13 4462363 4462500 -97410669 + L1PBa LINE L1 2444 2592 -4271 1221 213 28 19 chr13 4462566 4462927 -97410242 + L1PB3 LINE L1 5040 5403 -743 3471 142 30 5 chr13 4462936 4463526 -97409643 + L1PB3 LINE L1 5543 6147 -7 37 102 0 0 chr13 4463822 4463950 -97409219 + AT_rich Low_complexity Low_complexity 1 128 0 764 365 90 9 chr13 4464141 4464687 -97408482 + L2 LINE L2 1763 2352 -962 437 240 48 32 chr13 4464894 4465019 -97408150 - L2 LINE L2 0 3313 3187 504 238 0 10 chr13 4465091 4465192 -97407977 - AluJb SINE Alu -17 295 196 635 240 0 7 chr13 4465211 4465361 -97407808 - L1ME LINE L1 -1160 5484 5336 3689 236 86 42 chr13 4465370 4467088 -97406081 - L1ME LINE L1 -3850 2794 1001 815 263 48 12 chr13 4467304 4467555 -97405614 - L1ME LINE L1 -6281 261 2 1664 219 51 22 chr13 4467564 4468071 -97405098 - L1M4 LINE L1 -1314 4832 4311 403 325 70 37 chr13 4468078 4468349 -97404820 + L2 LINE L2 2698 2977 -337 2624 226 42 8 chr13 4468362 4468954 -97404215 + L1MC1 LINE L1 4 615 -5811 290 275 14 0 chr13 4468957 4469026 -97404143 + L1MC1 LINE L1 573 642 -5784 6519 238 49 7 chr13 4469027 4471134 -97402035 + L1MC1 LINE L1 3147 5342 -1084 6179 133 39 18 chr13 4471146 4472219 -97400950 + L1MC1 LINE L1 5518 6612 -1 30 45 0 0 chr13 4472434 4472478 -97400691 + AT_rich Low_complexity Low_complexity 1 44 0 331 138 0 94 chr13 4472479 4472660 -97400509 + (TAA)n Simple_repeat Simple_repeat 3 166 0 323 278 11 0 chr13 4472660 4472750 -97400419 - L1MC4 LINE L1 -1338 6704 6614 271 271 0 0 chr13 4472751 4472836 -97400333 + (TA)n Simple_repeat Simple_repeat 1 85 0 260 347 68 16 chr13 4472984 4473174 -97399995 - MIR SINE MIR -61 201 2 391 370 74 31 chr13 4473285 4473799 -97399370 - L2 LINE L2 -2606 708 173 2105 118 7 0 chr13 4474039 4474326 -97398843 + AluSx SINE Alu 1 289 -23 245 377 85 41 chr13 4476621 4477176 -97395993 + L2 LINE L2 212 790 -2524 798 276 5 5 chr13 4477816 4478001 -97395168 - MIR SINE MIR -20 242 58 865 249 13 27 chr13 4478365 4478590 -97394579 + MIR SINE MIR 41 262 0 206 279 0 0 chr13 4478617 4478660 -97394509 + L3 LINE CR1 731 773 -804 209 343 168 22 chr13 4481151 4481288 -97391881 - L2 LINE L2 -605 2709 2553 6171 87 14 2 chr13 4482888 4483732 -97389437 - L1PA10 LINE L1 -11 6157 5304 186 259 190 9 chr13 4483927 4484043 -97389126 - L2 LINE L2 -100 3213 3077 21 36 0 0 chr13 4484939 4484967 -97388202 + AT_rich Low_complexity Low_complexity 1 28 0 215 245 0 0 chr13 4485504 4485557 -97387612 + T-rich Low_complexity Low_complexity 1 53 0 927 150 40 111 chr13 4485601 4485827 -97387342 - MLT1B LTR MaLR 0 390 181 392 182 0 26 chr13 4485831 4485908 -97387261 - MLT1B LTR MaLR -315 75 1 1199 204 65 46 chr13 4486313 4486709 -97386460 + MER57A LTR ERV1 19 403 0 26 0 0 0 chr13 4486722 4486748 -97386421 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr13 4486783 4486832 -97386337 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 4487658 4487680 -97385489 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 31 47 chr13 4488595 4488659 -97384510 + L1MEc LINE L1 1924 1986 -4410 301 278 87 87 chr13 4488768 4489020 -97384149 + L1MEc LINE L1 2120 2371 -4025 709 271 92 0 chr13 4489263 4489492 -97383677 + MER46C DNA MER2_type 10 259 -79 618 78 29 0 chr13 4489610 4489712 -97383457 + (GA)n Simple_repeat Simple_repeat 2 106 0 230 285 89 16 chr13 4489846 4489969 -97383200 + L1MEc LINE L1 2713 2844 -3371 829 20 20 0 chr13 4489974 4490075 -97383094 + L1PA4 LINE L1 6052 6154 -1 2341 52 3 14 chr13 4490501 4490790 -97382379 - AluY SINE Alu -11 300 15 212 119 0 24 chr13 4491582 4491624 -97381545 + (GA)n Simple_repeat Simple_repeat 2 42 0 302 237 185 52 chr13 4492029 4492164 -97381005 + MIR SINE MIR 36 188 -74 2394 82 0 3 chr13 4492214 4492518 -97380651 - AluSp SINE Alu -10 303 1 22 0 0 0 chr13 4492619 4492641 -97380528 + AT_rich Low_complexity Low_complexity 1 22 0 773 144 44 62 chr13 4492641 4492801 -97380368 - MER4D LTR ERV1 -25 878 722 * 1332 87 61 6 chr13 4492776 4493018 -97380151 - MER4D LTR ERV1 -311 592 296 274 303 13 0 chr13 4493194 4493270 -97379899 - MLT1I LTR MaLR -248 161 85 219 269 155 87 chr13 4493645 4493682 -97379487 + MIR SINE MIR 29 62 -200 1732 146 62 4 chr13 4493682 4493957 -97379212 - AluJb SINE Alu -20 292 2 219 269 155 87 chr13 4493957 4494138 -97379031 + MIR SINE MIR 62 262 0 271 241 51 0 chr13 4494358 4494437 -97378732 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1446 263 78 36 chr13 4495186 4495818 -97377351 - L1ME3A LINE L1 -55 6509 5852 * 2916 273 108 51 chr13 4495810 4496975 -97376194 - L1MDa LINE L1 -1423 5117 4020 2377 132 26 33 chr13 4496975 4497039 -97376130 - L1MA9 LINE L1 0 6312 6249 2444 60 0 25 chr13 4497039 4497358 -97375811 - AluY SINE Alu 0 311 1 2377 132 26 33 chr13 4497358 4497748 -97375421 - L1MA9 LINE L1 -63 6249 5861 2916 273 108 51 chr13 4497748 4498122 -97375047 - L1MDa LINE L1 -2520 4020 3669 2293 97 0 0 chr13 4498122 4498420 -97374749 - AluSx SINE Alu -14 298 1 2916 273 108 51 chr13 4498420 4500477 -97372692 - L1MDa LINE L1 -2871 3669 1297 547 122 0 0 chr13 4501092 4501174 -97371995 + L1MC1 LINE L1 6247 6328 -5 1377 53 72 91 chr13 4502014 4502223 -97370946 + AluSg SINE Alu 1 205 -105 1856 80 0 28 chr13 4502224 4502494 -97370675 + AluY SINE Alu 42 304 0 3137 183 51 37 chr13 4502572 4503321 -97369848 + L1MC3 LINE L1 6935 7693 -92 236 203 17 0 chr13 4503462 4503521 -97369648 - L1MC3 LINE L1 -151 7634 7575 292 181 24 48 chr13 4503522 4503605 -97369564 + L1MC3 LINE L1 7705 7785 0 21 0 0 0 chr13 4503764 4503785 -97369384 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 4504122 4504150 -97369019 + AT_rich Low_complexity Low_complexity 1 28 0 212 343 0 14 chr13 4506268 4506341 -97366828 - L2 LINE L2 0 3313 3242 4730 206 27 39 chr13 4506758 4507916 -97365253 + L1MC3 LINE L1 6641 7784 -1 342 0 0 0 chr13 4509626 4509664 -97363505 + (TG)n Simple_repeat Simple_repeat 2 39 0 3429 188 160 12 chr13 4510591 4511368 -97361801 - THE1C-int LTR MaLR -757 894 3 1678 140 50 20 chr13 4511370 4511670 -97361499 - THE1C LTR MaLR 0 375 67 687 172 9 0 chr13 4512198 4512314 -97360855 + MLT1A1 LTR MaLR 249 365 0 224 320 8 57 chr13 4514189 4514311 -97358858 + L2 LINE L2 3155 3270 -43 23 0 0 0 chr13 4514319 4514342 -97358827 + AT_rich Low_complexity Low_complexity 1 23 0 738 171 0 0 chr13 4514345 4514474 -97358695 - L1MA5 LINE L1 -3 6297 6169 248 333 0 0 chr13 4514635 4514707 -97358462 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 276 100 0 0 chr13 4515641 4515681 -97357488 + (TG)n Simple_repeat Simple_repeat 1 40 0 430 274 51 57 chr13 4515699 4515874 -97357295 + L3 LINE CR1 923 1096 -481 284 384 18 0 chr13 4515880 4515992 -97357177 + L3 LINE CR1 1461 1574 -3 296 334 26 0 chr13 4516029 4516143 -97357026 - MIR SINE MIR -64 144 19 187 346 141 5 chr13 4516143 4516328 -97356841 + L3 LINE CR1 1098 1307 -270 236 275 119 0 chr13 4516475 4516584 -97356585 + MLT1J LTR MaLR 32 153 -358 346 277 42 50 chr13 4516902 4517162 -97356007 + HAL1 LINE L1 2246 2503 -4 1908 94 12 101 chr13 4518571 4518899 -97354270 - AluSq SINE Alu -14 299 1 25 0 0 0 chr13 4518901 4518926 -97354243 + AT_rich Low_complexity Low_complexity 1 25 0 231 292 45 0 chr13 4720187 4720276 -97152893 + MER112 DNA MER1_type 19 111 -149 291 140 0 0 chr13 4720285 4720335 -97152834 + (T)n Simple_repeat Simple_repeat 1 50 0 1652 94 8 0 chr13 4720999 4721233 -97151936 - L1PA11 LINE L1 0 6174 5939 530 213 7 7 chr13 4721370 4721506 -97151663 + MER3 DNA MER1_type 34 122 -87 1216 206 90 27 chr13 4721514 4721764 -97151405 + MER3 DNA MER1_type 2234 2516 -108 2265 120 0 18 chr13 4721764 4722105 -97151064 - MER1B DNA MER1_type 0 337 3 1216 206 90 27 chr13 4722105 4722222 -97150947 + MER3 DNA MER1_type 2516 2624 0 394 281 61 0 chr13 4722358 4722501 -97150668 - MIR SINE MIR -67 141 8 296 269 21 21 chr13 4722779 4722872 -97150297 - MIR SINE MIR 0 262 170 202 214 60 60 chr13 4722963 4723047 -97150122 - MIR SINE MIR -102 106 23 544 232 8 24 chr13 4723924 4724049 -97149120 + MIR SINE MIR 32 154 -108 181 352 45 50 chr13 4724295 4724474 -97148695 + L2 LINE L2 2576 2753 -561 4468 236 34 38 chr13 4724591 4725370 -97147799 + L1MC1 LINE L1 3193 3965 -2181 1222 222 12 102 chr13 4725370 4725771 -97147398 + MLT1A1 LTR MaLR 1 365 0 4468 236 34 38 chr13 4725771 4726403 -97146766 + L1MC1 LINE L1 3965 4598 -1548 1514 78 4 91 chr13 4726503 4726745 -97146424 - MLT2A2 LTR ERVL -232 221 1 2111 207 56 14 chr13 4726750 4727195 -97145974 - MER88 LTR ERVL 0 464 1 5341 181 43 38 chr13 4727195 4728389 -97144780 + L1MC1 LINE L1 4651 5840 -493 2009 95 57 3 chr13 4728389 4728672 -97144497 + AluSq SINE Alu 1 298 -15 5341 181 43 38 chr13 4728672 4729168 -97144001 + L1MC1 LINE L1 5840 6332 -1 366 309 98 66 chr13 4729200 4729669 -97143500 + L1ME4a LINE L1 2506 2989 -3157 25 0 0 0 chr13 4729682 4729707 -97143462 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 4730069 4730098 -97143071 + AT_rich Low_complexity Low_complexity 1 29 0 327 303 20 7 chr13 4730323 4730509 -97142660 + L1ME4a LINE L1 5282 5468 -723 302 308 121 57 chr13 4730526 4730965 -97142204 + L1ME4a LINE L1 5491 5957 -164 23 0 0 0 chr13 4730988 4731011 -97142158 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 4731115 4731142 -97142027 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 4731284 4731314 -97141855 + AT_rich Low_complexity Low_complexity 1 30 0 591 280 0 36 chr13 4731353 4731521 -97141648 - MIR SINE MIR 0 262 101 2324 61 3 26 chr13 4731618 4731931 -97141238 + AluY SINE Alu 1 306 -5 2020 40 24 12 chr13 4731931 4732180 -97140989 + AluY SINE Alu 50 302 -9 2559 51 3 3 chr13 4732190 4732501 -97140668 + AluY SINE Alu 1 311 0 2487 213 114 20 chr13 4733065 4733826 -97139343 - L1ME2 LINE L1 -15 6149 5317 739 234 43 59 chr13 4733808 4734180 -97138989 - L1ME2 LINE L1 -1698 4448 4083 * 288 238 60 12 chr13 4734213 4734297 -97138872 - MLT1C LTR MaLR -379 88 1 633 173 30 23 chr13 4734297 4734430 -97138739 - MLT1C-int LTR MaLR 0 1371 1238 245 172 35 52 chr13 4734438 4734496 -97138673 - MLT1C-int LTR MaLR -110 1625 1569 3320 255 67 36 chr13 4734654 4735798 -97137371 - MLT1C-int LTR MaLR -152 1219 40 435 202 0 0 chr13 4736328 4736422 -97136747 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 2118 43 0 0 chr13 4738784 4739038 -97134131 - L1PA3 LINE L1 -3 6152 5899 5590 159 22 5 chr13 4739450 4740518 -97132651 - L1 LINE L1 -1277 4869 3783 3773 169 29 69 chr13 4740507 4741159 -97132010 + L1MA7 LINE L1 5455 6132 -159 * 1510 74 5 0 chr13 4741159 4741349 -97131820 - AluY SINE Alu -9 302 112 283 71 0 24 chr13 4741349 4741385 -97131784 - AluY SINE Alu -268 35 1 3773 169 29 69 chr13 4741385 4741568 -97131601 + L1MA7 LINE L1 6130 6291 0 1899 134 28 3 chr13 4742977 4743261 -97129908 - AluSx SINE Alu -21 291 1 332 385 65 7 chr13 4743346 4743621 -97129548 - Tigger8 DNA MER2_type -22 644 354 297 231 56 37 chr13 4743983 4744091 -97129078 - MIR3 SINE MIR 0 208 99 233 204 0 0 chr13 4744220 4744269 -97128900 - L1MB4 LINE L1 -6 6174 6126 2202 58 10 48 chr13 4745146 4745457 -97127712 + AluY SINE Alu 1 299 -12 969 243 18 74 chr13 4746000 4746311 -97126858 - L1M4 LINE L1 -1232 5332 5005 2488 56 0 3 chr13 4746311 4746613 -97126556 - AluY SINE Alu -10 301 1 969 243 18 74 chr13 4746613 4746921 -97126248 - L1M4 LINE L1 -1559 5005 4644 2734 239 51 40 chr13 4746937 4747077 -97126092 - L1MCb LINE L1 -2998 3566 3429 574 128 77 0 chr13 4747077 4747194 -97125975 - L1MA9 LINE L1 -10 6302 6177 2734 239 51 40 chr13 4747194 4748154 -97125015 - L1MCb LINE L1 -3135 3429 2456 2200 116 0 3 chr13 4748154 4748457 -97124712 - AluSq SINE Alu -11 302 1 2734 239 51 40 chr13 4748457 4748712 -97124457 - L1MCb LINE L1 -4108 2456 2205 3669 243 67 24 chr13 4748745 4750589 -97122580 - L1MCb LINE L1 -4440 2124 3 850 210 19 39 chr13 4750960 4751217 -97121952 - MER96B DNA MER1_type? -2 415 164 216 274 0 0 chr13 4751525 4751576 -97121593 + (CATA)n Simple_repeat Simple_repeat 1 51 0 471 63 0 0 chr13 4751772 4751835 -97121334 + (TA)n Simple_repeat Simple_repeat 2 64 0 376 218 40 10 chr13 4751835 4751927 -97121242 - L1MA9 LINE L1 -90 6222 6125 24 53 0 0 chr13 4752066 4752104 -97121065 + AT_rich Low_complexity Low_complexity 1 38 0 327 149 0 0 chr13 4752526 4752600 -97120569 + (TA)n Simple_repeat Simple_repeat 2 75 0 812 273 23 23 chr13 4754065 4754373 -97118796 + HAL1 LINE L1 2063 2370 -137 2275 95 33 10 chr13 4754418 4754723 -97118446 - AluSx SINE Alu 0 312 1 492 268 258 5 chr13 4755063 4755272 -97117897 + MIR SINE MIR 1 262 0 318 341 34 52 chr13 4755401 4755668 -97117501 + L2 LINE L2 3033 3294 -19 1348 202 125 38 chr13 4755821 4756264 -97116905 + MER66A LTR ERV1 100 478 0 208 338 25 0 chr13 4756889 4756969 -97116200 - MIR SINE MIR -100 162 81 27482 94 9 12 chr13 4757413 4762388 -97110781 - L1PA7 LINE L1 -2 6152 1196 27 0 0 0 chr13 4763290 4763317 -97109852 + AT_rich Low_complexity Low_complexity 1 27 0 276 124 52 10 chr13 4763329 4763426 -97109743 + (TA)n Simple_repeat Simple_repeat 2 102 0 280 299 17 8 chr13 4763449 4763566 -97109603 + (TA)n Simple_repeat Simple_repeat 2 119 0 291 267 92 17 chr13 4764808 4764928 -97108241 + MIR SINE MIR 48 176 -86 361 305 0 30 chr13 4765412 4765543 -97107626 + MIR SINE MIR 57 183 -79 328 290 28 9 chr13 4765627 4765734 -97107435 - MIR SINE MIR -46 216 108 22 21 0 62 chr13 4767187 4767208 -97105961 + AT_rich Low_complexity Low_complexity 1 22 -23 1636 162 49 18 chr13 4767208 4767492 -97105677 - AluJb SINE Alu -19 293 1 22 21 0 62 chr13 4767492 4767518 -97105651 + AT_rich Low_complexity Low_complexity 22 45 0 2264 67 16 19 chr13 4767498 4767810 -97105359 - AluY SINE Alu 0 311 1 2596 52 0 0 chr13 4768160 4768468 -97104701 + AluY SINE Alu 1 308 -3 459 281 77 73 chr13 4769564 4769838 -97103331 + MLT1J LTR MaLR 52 326 -185 247 214 38 0 chr13 4769948 4770079 -97103090 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr13 4770271 4770507 -97102662 + MIR SINE MIR 19 262 0 234 0 0 0 chr13 4770536 4770562 -97102607 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1309 226 64 22 chr13 4771362 4771770 -97101399 + MLT1C LTR MaLR 42 466 -1 3356 256 59 34 chr13 4771771 4772960 -97100209 + MLT1C-int LTR MaLR 1 1219 -152 593 173 30 23 chr13 4773184 4773317 -97099852 + MLT1C-int LTR MaLR 1238 1371 0 262 238 60 12 chr13 4773317 4773401 -97099768 + MLT1C LTR MaLR 1 88 -379 654 234 43 59 chr13 4773434 4773806 -97099363 + L1ME2 LINE L1 4083 4448 -1698 * 2260 213 114 20 chr13 4773788 4774549 -97098620 + L1ME2 LINE L1 5317 6149 -15 2525 55 3 3 chr13 4775113 4775423 -97097746 - AluY SINE Alu -1 310 1 2200 45 59 10 chr13 4775433 4775721 -97097448 - AluY SINE Alu -9 302 1 272 200 27 13 chr13 4775817 4775892 -97097277 + L1M LINE L1 5322 5397 -903 2422 140 30 21 chr13 4777170 4777598 -97095571 + Tigger2a DNA MER2_type 1 432 -2 819 163 75 27 chr13 4777646 4777793 -97095376 + FRAM SINE Alu 4 157 -9 30 0 0 0 chr13 4779924 4779954 -97093215 + AT_rich Low_complexity Low_complexity 1 30 0 2514 50 0 0 chr13 4780211 4780514 -97092655 - AluY SINE Alu -8 303 1 21 57 0 0 chr13 4780711 4780746 -97092423 + AT_rich Low_complexity Low_complexity 1 35 0 312 91 0 0 chr13 4780820 4780864 -97092305 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 0 0 0 chr13 4781883 4781907 -97091262 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1050 33 8 0 chr13 4781926 4782048 -97091121 - AluY SINE Alu -188 123 1 718 68 4 2 chr13 4782269 4782519 -97090650 + AluY SINE Alu 1 307 -4 1714 229 106 8 chr13 4782690 4783210 -97089959 - MER90 LTR ERV1 -4 571 1 1976 129 0 10 chr13 4784121 4784415 -97088754 - AluSg SINE Alu -19 291 1 643 89 68 0 chr13 4784810 4785144 -97088025 + (TA)n Simple_repeat Simple_repeat 1 356 0 25 0 0 0 chr13 4785152 4785177 -97087992 + AT_rich Low_complexity Low_complexity 1 25 0 321 207 0 0 chr13 4785314 4785401 -97087768 + (CCA)n Simple_repeat Simple_repeat 3 89 0 564 241 0 0 chr13 4785422 4785596 -97087573 + (CCA)n Simple_repeat Simple_repeat 3 176 0 639 178 18 12 chr13 4785632 4785801 -97087368 + (CACCAT)n Simple_repeat Simple_repeat 1 170 0 853 300 104 34 chr13 4786351 4786952 -97086217 - MER115 DNA AcHobo -9 684 11 2495 108 17 120 chr13 4786957 4787405 -97085764 + LTR12 LTR ERV1 1 387 -327 1958 144 0 3 chr13 4787405 4787703 -97085466 + AluY SINE Alu 1 297 -14 2495 108 17 120 chr13 4787703 4787789 -97085380 + LTR12 LTR ERV1 387 480 -234 26 30 0 0 chr13 4787906 4787939 -97085230 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr13 4787988 4788019 -97085150 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 4788333 4788373 -97084796 + AT_rich Low_complexity Low_complexity 1 40 0 2402 57 7 13 chr13 4789400 4789699 -97083470 + AluY SINE Alu 1 297 -14 6757 53 21 0 chr13 4789901 4790114 -97083055 - L1PA7 LINE L1 -3 6151 5944 2035 68 0 19 chr13 4790114 4790378 -97082791 - AluY SINE Alu -15 296 38 6757 53 21 0 chr13 4790378 4791224 -97081945 - L1PA7 LINE L1 -210 5944 5107 653 39 39 10 chr13 4791224 4791326 -97081843 + L1P LINE L1 4617 4721 -1425 * 2047 240 77 47 chr13 4791321 4792828 -97080341 + L1ME2 LINE L1 4214 5784 -380 686 144 38 8 chr13 4792854 4793000 -97080169 - L1MD3 LINE L1 0 7995 7632 828 219 259 77 chr13 4793003 4793533 -97079636 + MER51A LTR ERV1 1 626 -8 2188 188 68 10 chr13 4793558 4794058 -97079111 - L1MC3 LINE L1 -157 7628 7100 986 212 92 15 chr13 4794111 4794436 -97078733 + L1ME2 LINE L1 5807 6156 -8 184 340 170 0 chr13 4795708 4795808 -97077361 - L2 LINE L2 -2 3270 3154 309 135 0 0 chr13 4796782 4796834 -97076335 + (CA)n Simple_repeat Simple_repeat 2 53 0 2409 69 0 0 chr13 4797444 4797750 -97075419 + AluY SINE Alu 1 306 -5 1415 271 19 60 chr13 4797750 4798506 -97074663 - L1ME3A LINE L1 -192 6238 5514 373 335 101 8 chr13 4798519 4798767 -97074402 - L1ME3A LINE L1 -905 5501 5231 307 284 142 24 chr13 4798970 4799139 -97074030 - L1ME3A LINE L1 -1313 5093 4905 651 195 84 39 chr13 4799147 4799301 -97073868 + FRAM SINE Alu 1 158 -18 341 264 49 68 chr13 4799304 4799467 -97073702 - L1ME3A LINE L1 -1511 4895 4736 23 54 0 0 chr13 4799502 4799539 -97073630 + AT_rich Low_complexity Low_complexity 1 37 0 338 194 94 70 chr13 4799727 4799964 -97073205 - L1MEc LINE L1 -3882 2524 2322 2506 151 26 16 chr13 4799978 4800482 -97072687 - L1MA8 LINE L1 0 6291 5783 21 36 0 0 chr13 4800636 4800664 -97072505 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 4800790 4800833 -97072336 + AT_rich Low_complexity Low_complexity 1 43 0 478 300 66 33 chr13 4800918 4801161 -97072008 - L1MEc LINE L1 -4989 1420 1170 205 135 39 0 chr13 4802517 4802569 -97070600 + (CGG)n Simple_repeat Simple_repeat 2 55 0 448 385 42 4 chr13 4803693 4803953 -97069216 + L3 LINE CR1 930 1199 -378 210 296 102 71 chr13 4804159 4804257 -97068912 + L3 LINE CR1 1472 1572 -5 1406 226 64 0 chr13 4804503 4804862 -97068307 - MLT1C-int LTR MaLR -989 382 1 1672 191 89 19 chr13 4804866 4805291 -97067878 - MLT1C LTR MaLR -7 460 6 573 248 47 0 chr13 4805743 4805892 -97067277 + MIR SINE MIR 81 236 -26 303 93 0 0 chr13 4806463 4806506 -97066663 + (TG)n Simple_repeat Simple_repeat 2 44 0 2844 25 0 0 chr13 4807368 4807708 -97065461 - AluYb8 SINE Alu 0 340 1 2252 130 24 3 chr13 4808138 4808516 -97064653 + L1PB3 LINE L1 5588 5973 -181 285 71 14 86 chr13 4808555 4808625 -97064544 + L1PB3 LINE L1 5956 6020 -134 2452 84 0 0 chr13 4812241 4812552 -97060617 + AluY SINE Alu 1 311 0 381 337 90 31 chr13 4812810 4813301 -97059868 - L2 LINE L2 -671 2643 2072 207 0 0 0 chr13 4814373 4814396 -97058773 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2221 88 7 0 chr13 4815949 4816243 -97056926 + AluY SINE Alu 1 296 -15 2549 51 0 3 chr13 4819222 4819534 -97053635 - AluY SINE Alu 0 311 1 1654 196 3 3 chr13 4820420 4820726 -97052443 + AluJo SINE Alu 1 306 -6 2994 209 22 57 chr13 4820727 4821232 -97051937 - L1MD1 LINE L1 -59 6183 5716 1785 170 0 21 chr13 4821232 4821540 -97051629 + AluJo SINE Alu 1 302 0 2994 209 22 57 chr13 4821540 4821883 -97051286 - L1MD1 LINE L1 -526 5716 5363 372 104 26 26 chr13 4821896 4821973 -97051196 + CT-rich Low_complexity Low_complexity 3 79 0 867 212 12 0 chr13 4821981 4822151 -97051018 - FRAM SINE Alu -4 172 1 1680 239 128 7 chr13 4822156 4822755 -97050414 - L1MD1 LINE L1 -821 5325 4654 886 177 0 6 chr13 4822753 4822928 -97050241 + L1MC/D LINE L1 5446 5619 -623 * 934 353 85 36 chr13 4823474 4824828 -97048341 + L2 LINE L2 748 2167 -1147 324 250 0 38 chr13 4824911 4824991 -97048178 + MER45A DNA AcHobo 1 77 -101 1502 135 23 0 chr13 4825044 4825304 -97047865 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr13 4825305 4825373 -97047796 + MER45A DNA AcHobo 100 168 -10 197 400 27 0 chr13 4825409 4825519 -97047650 + L2 LINE L2 2565 2677 -637 242 233 17 0 chr13 4825728 4825798 -97047371 - L1M1 LINE L1 -551 5752 5682 201 147 0 0 chr13 4825800 4825834 -97047335 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 285 283 67 2 chr13 4825867 4826110 -97047059 - L1ME LINE L1 -484 5637 5375 608 283 124 75 chr13 4826239 4827113 -97046056 - L1ME LINE L1 -873 5273 4358 308 289 59 17 chr13 4827311 4827600 -97045569 - L1ME LINE L1 -2166 3980 3682 266 195 79 0 chr13 4828079 4828243 -97044926 + (TA)n Simple_repeat Simple_repeat 2 178 0 479 154 10 58 chr13 4828313 4828417 -97044752 - AluJb SINE Alu -13 299 201 * 513 176 0 0 chr13 4828410 4828495 -97044674 - FRAM SINE Alu -73 103 19 1903 240 118 16 chr13 4829246 4830001 -97043168 + L1MC4a LINE L1 6977 7808 0 22 0 0 0 chr13 4831197 4831219 -97041950 + AT_rich Low_complexity Low_complexity 1 22 0 186 309 0 0 chr13 4831661 4831703 -97041466 - L2 LINE L2 -89 3183 3142 198 0 0 0 chr13 4831849 4831871 -97041298 + (A)n Simple_repeat Simple_repeat 1 22 0 481 249 53 24 chr13 4831871 4832040 -97041129 - MER45C DNA AcHobo -61 892 719 467 295 211 21 chr13 4832090 4832565 -97040604 - MER45C DNA AcHobo -351 602 38 232 315 92 23 chr13 4832598 4832728 -97040441 - MIR SINE MIR -110 152 14 656 47 0 0 chr13 4833802 4833888 -97039281 - AluY SINE Alu -10 301 216 477 202 16 47 chr13 4833907 4834036 -97039133 - HUERS-P2 LTR ERV1 -2963 125 1 3239 129 79 66 chr13 4834036 4834804 -97038365 - LTR1 LTR ERV1 0 785 8 2141 144 5 52 chr13 4835505 4835909 -97037260 - MLT1B LTR MaLR -5 385 1 789 224 17 29 chr13 4837712 4837953 -97035216 - L1MA9 LINE L1 -186 6126 5889 207 0 0 0 chr13 4838781 4838804 -97034365 + (CA)n Simple_repeat Simple_repeat 2 24 0 391 280 251 6 chr13 4839038 4839213 -97033956 - MIR SINE MIR -11 251 34 607 210 11 11 chr13 4840048 4840224 -97032945 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 280 339 51 26 chr13 4840662 4840857 -97032312 - L2 LINE L2 -1 3312 3113 318 106 0 0 chr13 4840934 4840981 -97032188 + (TA)n Simple_repeat Simple_repeat 1 47 0 297 75 0 0 chr13 4840974 4841014 -97032155 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 3092 63 0 0 chr13 4841014 4841412 -97031757 - MLT2A1 LTR ERVL -46 398 1 2132 108 3 7 chr13 4842420 4842717 -97030452 - AluSg SINE Alu -14 296 1 234 0 0 0 chr13 4844196 4844222 -97028947 + (CA)n Simple_repeat Simple_repeat 2 27 0 2352 87 3 10 chr13 4844250 4844562 -97028607 - AluY SINE Alu -1 310 1 332 238 109 30 chr13 4844883 4844984 -97028185 + MER110-int LTR ERV1 2748 2856 -1791 324 157 54 0 chr13 4845195 4845361 -97027808 + (TA)n Simple_repeat Simple_repeat 1 175 0 2230 106 0 3 chr13 4845606 4845899 -97027270 - AluY SINE Alu -19 292 1 2303 93 0 3 chr13 4846017 4846318 -97026851 - AluY SINE Alu -11 300 1 23 0 0 0 chr13 4846410 4846433 -97026736 + AT_rich Low_complexity Low_complexity 1 23 0 559 272 146 7 chr13 4846434 4846668 -97026501 - MIR SINE MIR -21 241 3 778 161 13 7 chr13 4846701 4846850 -97026319 + MER58B DNA MER1_type 177 326 -15 2314 50 7 27 chr13 4847186 4847486 -97025683 + AluY SINE Alu 1 294 -17 199 41 102 0 chr13 4847690 4847739 -97025430 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 2467 66 0 0 chr13 4847911 4848213 -97024956 + AluY SINE Alu 1 302 -9 315 0 0 0 chr13 4849387 4849422 -97023747 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 26 0 26 chr13 4849528 4849540 -97023629 + AT_rich Low_complexity Low_complexity 1 12 -26 4811 90 20 23 chr13 4849540 4849896 -97023273 + L1PB1 LINE L1 5417 5772 -379 387 0 0 0 chr13 4849896 4849939 -97023230 + (CA)n Simple_repeat Simple_repeat 2 44 0 4811 90 20 23 chr13 4849939 4849957 -97023212 + L1PB1 LINE L1 5772 5789 -362 1635 100 4 4 chr13 4849957 4850186 -97022983 + AluY SINE Alu 67 295 -16 4811 90 20 23 chr13 4850186 4850361 -97022808 + L1PB1 LINE L1 5789 5963 -188 3666 107 99 31 chr13 4850361 4850954 -97022215 - LTR12 LTR ERV1 0 688 46 2395 76 3 0 chr13 4850954 4851256 -97021913 + AluY SINE Alu 1 303 -8 3666 107 99 31 chr13 4851256 4851306 -97021863 - LTR12 LTR ERV1 -642 46 1 4811 90 20 23 chr13 4851306 4851489 -97021680 + L1PB1 LINE L1 5963 6149 -2 21 26 0 26 chr13 4851489 4851515 -97021654 + AT_rich Low_complexity Low_complexity 12 38 0 23 54 0 0 chr13 4851799 4851836 -97021333 + AT_rich Low_complexity Low_complexity 1 37 0 1786 139 7 53 chr13 4853271 4853573 -97019596 + AluSx SINE Alu 1 288 -24 287 299 58 73 chr13 4854126 4854263 -97018906 + L2 LINE L2 3138 3272 0 1005 149 56 5 chr13 4855314 4855528 -97017641 + L1MC3 LINE L1 7470 7694 -91 * 1723 164 138 61 chr13 4855523 4855721 -97017448 + L1MA6 LINE L1 5754 5935 -365 1800 155 14 0 chr13 4855721 4856031 -97017138 + AluSx SINE Alu 1 314 0 1723 164 138 61 chr13 4856031 4856335 -97016834 + L1MA6 LINE L1 5935 6298 -2 554 138 21 0 chr13 4856332 4856426 -97016743 + L1MC3 LINE L1 7677 7772 -13 * 23 0 0 0 chr13 4857960 4857983 -97015186 + AT_rich Low_complexity Low_complexity 1 23 0 269 334 141 10 chr13 4859223 4859432 -97013737 + MIR SINE MIR 18 248 -14 1673 167 37 14 chr13 4859653 4860007 -97013162 + L1MA4 LINE L1 5939 6300 0 924 269 48 85 chr13 4860190 4860674 -97012495 - MLT1K LTR MaLR 0 588 123 220 342 89 0 chr13 4861445 4861524 -97011645 + MIR SINE MIR 26 111 -97 4569 167 26 2 chr13 4862041 4863151 -97010018 + L1MA4A LINE L1 4431 5564 -736 3186 141 94 0 chr13 4863152 4863757 -97009412 + L1MA4A LINE L1 5639 6300 -3 200 211 18 18 chr13 4863864 4863921 -97009248 + (TG)n Simple_repeat Simple_repeat 2 58 0 3924 137 31 3 chr13 4863965 4864664 -97008505 + L1MA6 LINE L1 5582 6300 0 607 271 49 31 chr13 4864738 4864963 -97008206 + MIR SINE MIR 34 262 0 2133 166 64 5 chr13 4865060 4865464 -97007705 + MSTA LTR MaLR 1 428 0 279 183 28 14 chr13 4865552 4865623 -97007546 - Tigger5 DNA MER2_type -1 2322 2251 2458 55 13 0 chr13 4865847 4866154 -97007015 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 4866154 4866182 -97006987 + AT_rich Low_complexity Low_complexity 1 28 0 244 61 0 41 chr13 4866553 4866602 -97006567 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3043 121 116 82 chr13 4866717 4867476 -97005693 - LTR1 LTR ERV1 0 785 1 23 0 0 0 chr13 4867741 4867764 -97005405 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr13 4868160 4868181 -97004988 + (TA)n Simple_repeat Simple_repeat 2 22 0 2326 96 3 16 chr13 4868184 4868498 -97004671 - AluY SINE Alu -1 310 1 1996 111 11 0 chr13 4868790 4869061 -97004108 - AluSp SINE Alu -16 297 24 2532 118 8 0 chr13 4870749 4871121 -97002048 + THE1C LTR MaLR 1 375 0 236 204 0 0 chr13 4871613 4871662 -97001507 + A-rich Low_complexity Low_complexity 1 49 0 2500 62 7 0 chr13 4873173 4873482 -96999687 - AluY SINE Alu 0 311 1 314 61 20 0 chr13 4873484 4873533 -96999636 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 585 253 22 11 chr13 4873607 4873785 -96999384 - HAL1 LINE L1 -705 1802 1623 204 347 14 20 chr13 4874310 4874457 -96998712 + CT-rich Low_complexity Low_complexity 3 148 0 320 267 108 23 chr13 4874657 4874833 -96998336 - HAL1 LINE L1 -886 1621 1431 2192 84 3 10 chr13 4874868 4875164 -96998005 - AluY SINE Alu -17 294 1 258 274 0 0 chr13 4875175 4875226 -96997943 + MIR SINE MIR 73 123 -85 1974 115 36 20 chr13 4875255 4875559 -96997610 - AluSq SINE Alu -4 309 1 190 302 19 0 chr13 4875610 4875663 -96997506 + L2 LINE L2 2983 3036 -236 2167 140 62 12 chr13 4875682 4876088 -96997081 + MSTB LTR MaLR 1 426 0 2329 105 0 0 chr13 4876107 4876411 -96996758 - AluSg1 SINE Alu -5 304 1 483 307 34 11 chr13 4876830 4877006 -96996163 + MIR SINE MIR 14 193 -69 424 141 45 34 chr13 4878052 4878229 -96994940 + (TA)n Simple_repeat Simple_repeat 1 179 0 6143 149 59 19 chr13 4878284 4879468 -96993701 + Tigger3b DNA MER2_type 1 1231 0 22 0 0 0 chr13 4880350 4880372 -96992797 + AT_rich Low_complexity Low_complexity 1 22 0 643 260 41 6 chr13 4881300 4881469 -96991700 - MIR SINE MIR -14 248 74 2253 90 17 0 chr13 4881479 4881778 -96991391 + AluY SINE Alu 1 304 -7 780 202 85 4 chr13 4881778 4882050 -96991119 + L1MB3 LINE L1 3041 3334 -2812 1996 92 46 4 chr13 4882061 4882342 -96990827 + AluSc SINE Alu 1 293 -16 4324 200 42 14 chr13 4882343 4884148 -96989021 + L1MB3 LINE L1 4327 6181 -2 306 343 126 0 chr13 4884489 4884664 -96988505 - MIR SINE MIR -17 245 49 2442 59 3 3 chr13 4884697 4885003 -96988166 - AluY SINE Alu -5 306 1 435 38 0 0 chr13 4885479 4885532 -96987637 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chr13 4885924 4885953 -96987216 + AT_rich Low_complexity Low_complexity 1 29 0 1996 141 0 10 chr13 4887127 4887440 -96985729 - AluSx SINE Alu -2 310 1 197 116 0 23 chr13 4888150 4888193 -96984976 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 24 53 0 0 chr13 4888325 4888363 -96984806 + AT_rich Low_complexity Low_complexity 1 38 0 470 314 100 32 chr13 4888651 4888722 -96984447 - L1ME4a LINE L1 -209 5912 5847 2179 109 7 0 chr13 4888722 4889016 -96984153 - AluSp SINE Alu -7 306 11 470 314 100 32 chr13 4889016 4889285 -96983884 - L1ME4a LINE L1 -274 5847 5549 227 255 0 0 chr13 4889829 4889876 -96983293 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 85 0 0 chr13 4890821 4890880 -96982289 + AT_rich Low_complexity Low_complexity 1 59 0 355 326 68 7 chr13 4890891 4891038 -96982131 + MIR SINE MIR 21 176 -86 374 293 95 48 chr13 4891587 4892007 -96981162 - L1M4 LINE L1 -2955 3191 2752 479 194 40 49 chr13 4892404 4892443 -96980726 - L1ME1 LINE L1 -5 6161 6123 2507 41 0 3 chr13 4892443 4892737 -96980432 + AluY SINE Alu 1 293 -18 479 194 40 49 chr13 4892737 4892892 -96980277 - L1ME1 LINE L1 -43 6123 5965 336 232 37 0 chr13 4893049 4893131 -96980038 + L1MC1 LINE L1 5997 6081 -252 330 258 6 50 chr13 4893134 4893293 -96979876 - MER52A LTR ERV1 -3 1752 1601 623 206 21 185 chr13 4893293 4893886 -96979283 - MER52A LTR ERV1 -141 495 283 1704 169 11 0 chr13 4894111 4894389 -96978780 - AluJo SINE Alu -31 281 1 235 299 93 31 chr13 4894636 4894733 -96978436 + L2 LINE L2 3162 3264 -8 363 302 76 6 chr13 4894850 4895022 -96978147 + MIR SINE MIR 21 204 -58 989 283 187 38 chr13 4897420 4898445 -96974724 - L2 LINE L2 -52 3261 1968 2151 130 3 13 chr13 4899850 4900165 -96973004 - AluSq SINE Alu -1 312 1 207 139 0 0 chr13 4900577 4900613 -96972556 + (TG)n Simple_repeat Simple_repeat 2 37 0 348 255 89 25 chr13 4900847 4901004 -96972165 - MLT1D LTR MaLR -262 243 77 4246 217 28 28 chr13 4901039 4902024 -96971145 + L1MC2 LINE L1 4378 5361 -983 2629 90 19 3 chr13 4902024 4902391 -96970778 + THE1C LTR MaLR 1 373 -2 4246 217 28 28 chr13 4902391 4903247 -96969922 + L1MC2 LINE L1 5361 6226 -118 321 26 0 0 chr13 4903247 4903285 -96969884 + (TG)n Simple_repeat Simple_repeat 1 38 0 4246 217 28 28 chr13 4903285 4903405 -96969764 + L1MC2 LINE L1 6226 6344 0 3054 171 35 62 chr13 4903381 4903784 -96969385 + L1MB7 LINE L1 5297 5709 -475 * 2018 91 3 24 chr13 4903784 4904098 -96969071 + AluY SINE Alu 1 308 0 3054 171 35 62 chr13 4904098 4904550 -96968619 + L1MB7 LINE L1 5709 6130 -54 2271 72 21 0 chr13 4904651 4904942 -96968227 - AluY SINE Alu -14 297 1 2317 98 0 25 chr13 4905486 4905801 -96967368 - AluY SINE Alu -4 307 1 3649 171 17 65 chr13 4905845 4906828 -96966341 + L1MA8 LINE L1 4857 5760 -531 2322 107 0 0 chr13 4906828 4907137 -96966032 + AluSg SINE Alu 1 309 -1 3649 171 17 65 chr13 4907137 4907450 -96965719 + L1MA8 LINE L1 5760 6086 -205 210 375 55 34 chr13 4907604 4907841 -96965328 - L2 LINE L2 -661 2653 2412 2175 111 7 0 chr13 4907964 4908261 -96964908 + AluSg SINE Alu 1 299 -11 1603 174 7 43 chr13 4908580 4908884 -96964285 - AluJb SINE Alu -15 297 5 2511 73 0 0 chr13 4908907 4909208 -96963961 - AluY SINE Alu -4 307 7 678 84 0 0 chr13 4909549 4909644 -96963525 - AluY SINE Alu 0 311 217 23 33 0 0 chr13 4909929 4909959 -96963210 + AT_rich Low_complexity Low_complexity 1 30 0 1550 195 25 42 chr13 4913123 4913554 -96959615 - L1MB7 LINE L1 -9 6175 5752 1169 248 26 0 chr13 4913558 4913869 -96959300 + L1MB7 LINE L1 5404 5722 -456 238 302 10 21 chr13 4914789 4914885 -96958284 + L2 LINE L2 3177 3271 -1 266 328 136 39 chr13 4914943 4915501 -96957668 - L2 LINE L2 -573 2741 2130 1290 218 120 19 chr13 4915592 4916009 -96957160 + MLT1C LTR MaLR 3 461 -6 46 45 0 0 chr13 4917720 4917787 -96955382 + AT_rich Low_complexity Low_complexity 1 67 0 2160 157 0 10 chr13 4918409 4918722 -96954447 - AluSx SINE Alu -2 310 1 180 0 0 0 chr13 4918800 4918820 -96954349 + (CA)n Simple_repeat Simple_repeat 1 20 0 26 23 0 23 chr13 4919143 4919166 -96954003 + AT_rich Low_complexity Low_complexity 1 24 -19 2165 94 0 3 chr13 4919166 4919452 -96953717 + AluSg SINE Alu 1 285 -25 26 23 0 23 chr13 4919452 4919472 -96953697 + AT_rich Low_complexity Low_complexity 24 43 0 279 285 69 32 chr13 4920048 4920294 -96952875 - L1M4 LINE L1 -1995 4151 3897 228 35 0 0 chr13 4920367 4920396 -96952773 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 298 298 114 32 chr13 4920663 4920821 -96952348 + L2 LINE L2 3102 3272 0 610 287 36 24 chr13 4921120 4921454 -96951715 + L1MEd LINE L1 920 1257 -4862 352 316 94 33 chr13 4921545 4921757 -96951412 + L1MEd LINE L1 1437 1661 -4649 1538 95 0 25 chr13 4921888 4922131 -96951038 + L1MC/D LINE L1 5321 5557 -787 325 298 12 0 chr13 4922231 4922315 -96950854 - Tigger7 DNA MER2_type -318 232 148 4468 141 47 44 chr13 4922356 4922449 -96950720 - L1MA7 LINE L1 -60 6231 6140 3352 136 7 31 chr13 4922449 4923037 -96950132 + L1PA16 LINE L1 5584 6157 -9 4468 141 47 44 chr13 4923037 4923899 -96949270 - L1MA7 LINE L1 -151 6140 5273 2173 100 0 0 chr13 4926604 4926884 -96946285 + AluSc SINE Alu 1 280 -29 2409 82 0 6 chr13 4926920 4927235 -96945934 + AluSq SINE Alu 1 313 0 199 324 28 0 chr13 4927255 4927326 -96945843 + MIR SINE MIR 57 129 -133 302 358 7 7 chr13 4927771 4927922 -96945247 + LTR33 LTR ERVL 1 151 -370 197 197 16 0 chr13 4928155 4928216 -96944953 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 929 118 0 0 chr13 4928675 4928802 -96944367 - AluJb SINE Alu -16 296 170 733 107 0 9 chr13 4928918 4929030 -96944139 + LTR1 LTR ERV1 382 492 -293 1660 94 0 18 chr13 4929030 4929254 -96943915 - AluY SINE Alu -91 220 1 362 208 28 0 chr13 4929256 4929362 -96943807 + L1ME2 LINE L1 4611 4719 -1427 * 5057 144 42 22 chr13 4929338 4930564 -96942605 + L1MA8 LINE L1 5042 6290 -1 1780 244 47 43 chr13 4930596 4931672 -96941497 + L1ME2 LINE L1 4694 5781 -381 2315 100 0 25 chr13 4931672 4931851 -96941318 - AluSq SINE Alu -2 311 142 2219 98 3 49 chr13 4931851 4932179 -96940990 - AluSp SINE Alu 0 313 1 2315 100 0 25 chr13 4932179 4932318 -96940851 - AluSq SINE Alu -171 142 1 1780 244 47 43 chr13 4932318 4932391 -96940778 + L1ME2 LINE L1 5781 5852 -310 290 311 40 13 chr13 4932412 4932563 -96940606 + L1ME2 LINE L1 5910 6064 -100 * 5386 211 92 52 chr13 4932558 4934213 -96938956 + L1PA13 LINE L1 5293 5438 -725 418 162 0 0 chr13 4934213 4934281 -96938888 + MLT1A1 LTR MaLR 248 315 -50 5386 211 92 52 chr13 4934281 4935036 -96938133 + L1PA13 LINE L1 5438 6162 -1 253 270 40 0 chr13 4935042 4935168 -96938001 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 4936034 4936055 -96937114 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 384 38 27 chr13 4936126 4936311 -96936858 - MIR SINE MIR -74 188 2 6800 114 7 9 chr13 4936494 4937465 -96935704 - LTR5 LTR ERVK 0 969 1 493 291 53 68 chr13 4937782 4937878 -96935291 - MIR SINE MIR 0 262 166 2225 109 0 26 chr13 4937878 4938189 -96934980 - AluSc SINE Alu -6 303 1 493 291 53 68 chr13 4938189 4938357 -96934812 - MIR SINE MIR -96 166 2 2060 120 21 3 chr13 4938810 4939101 -96934068 - AluSq SINE Alu -17 296 1 2064 156 0 0 chr13 4939516 4939818 -96933351 + AluSx SINE Alu 1 302 -10 2449 83 0 0 chr13 4940383 4940683 -96932486 - AluY SINE Alu -11 300 1 2135 106 0 0 chr13 4941235 4941552 -96931617 - AluY SINE Alu 0 317 1 4634 170 14 21 chr13 4941563 4942282 -96930887 - L1MA6 LINE L1 -5 6295 5583 1673 94 0 45 chr13 4942282 4942526 -96930643 - AluSc SINE Alu -5 304 72 4634 170 14 21 chr13 4942526 4942737 -96930432 - L1MA6 LINE L1 -717 5583 5372 247 224 0 0 chr13 4942739 4942797 -96930372 + L1 LINE L1 5091 5148 -998 1495 221 97 68 chr13 4942933 4943040 -96930129 - MLT1E1 LTR MaLR -59 595 493 1948 138 3 42 chr13 4943040 4943352 -96929817 - AluSx SINE Alu -12 300 1 1495 221 97 68 chr13 4943352 4943413 -96929756 - MLT1E1 LTR MaLR -161 493 435 228 35 0 0 chr13 4943413 4943442 -96929727 + (TG)n Simple_repeat Simple_repeat 1 29 0 1495 221 97 68 chr13 4943442 4943850 -96929319 - MLT1E1 LTR MaLR -219 435 1 2447 64 18 12 chr13 4944061 4944391 -96928778 - L1PA8 LINE L1 0 6172 5841 2211 95 0 14 chr13 4944402 4944696 -96928473 - AluSx SINE Alu -18 294 5 403 338 35 25 chr13 4945023 4945337 -96927832 + L1MB5 LINE L1 39 355 -6029 3119 238 32 44 chr13 4945458 4946756 -96926413 + L1MB5 LINE L1 554 1842 -4542 827 137 8 23 chr13 4946805 4946936 -96926233 + AluSg/x SINE Alu 161 289 -20 4356 237 55 68 chr13 4946936 4948881 -96924288 + L1MB5 LINE L1 3279 5247 -1163 2238 101 0 7 chr13 4948881 4949179 -96923990 + AluY SINE Alu 1 296 -15 4356 237 55 68 chr13 4949179 4949592 -96923577 + L1MB5 LINE L1 5247 5664 -746 2029 147 0 10 chr13 4949592 4949904 -96923265 - AluSq SINE Alu -4 309 1 4356 237 55 68 chr13 4949904 4949994 -96923175 + L1MB5 LINE L1 5664 5754 -656 1454 162 3 81 chr13 4949994 4950278 -96922891 + AluJo SINE Alu 15 276 -36 4356 237 55 68 chr13 4950278 4950989 -96922180 + L1MB5 LINE L1 5754 6402 -8 341 306 91 30 chr13 4951061 4951260 -96921909 + MIR SINE MIR 46 256 -6 1681 181 18 15 chr13 4951787 4952129 -96921040 + MER2 DNA MER2_type 1 343 -1 1317 113 16 0 chr13 4952230 4952416 -96920753 - AluSp SINE Alu -124 189 1 2183 82 0 0 chr13 4952537 4952818 -96920351 - AluSq SINE Alu -32 281 1 629 302 57 41 chr13 4953020 4953480 -96919689 + MER21-int LTR ERV1 3630 4096 -95 247 362 32 0 chr13 4954646 4954740 -96918429 + L2 LINE L2 3212 3308 -5 24 53 0 0 chr13 4955498 4955536 -96917633 + AT_rich Low_complexity Low_complexity 1 38 0 33 66 0 0 chr13 4955557 4955618 -96917551 + AT_rich Low_complexity Low_complexity 1 61 0 2324 72 3 0 chr13 4956516 4956807 -96916362 - AluY SINE Alu -19 292 1 957 157 0 0 chr13 4960614 4960767 -96912402 + MSTC LTR MaLR 1 153 -275 1640 164 4 4 chr13 4960797 4961059 -96912110 + AluJo SINE Alu 29 290 -22 1521 147 27 31 chr13 4961063 4961356 -96911813 + MSTC LTR MaLR 137 428 0 2368 67 0 7 chr13 4961968 4962266 -96910903 + AluY SINE Alu 1 296 -15 2117 109 3 0 chr13 4962275 4962558 -96910611 + AluSg SINE Alu 7 290 -20 22 0 0 0 chr13 4963400 4963422 -96909747 + AT_rich Low_complexity Low_complexity 1 22 0 369 192 92 23 chr13 4963451 4963581 -96909588 - L1MC5 LINE L1 -39 7922 7784 22 35 0 0 chr13 4963924 4963953 -96909216 + AT_rich Low_complexity Low_complexity 1 29 0 2178 71 0 3 chr13 4963953 4964272 -96908897 + AluY SINE Alu 1 318 0 2237 89 0 32 chr13 4964690 4965004 -96908165 + AluY SINE Alu 1 304 -7 2606 48 0 7 chr13 4965459 4965769 -96907400 - AluY SINE Alu -1 310 3 1064 250 113 46 chr13 4967170 4967605 -96905564 - L1ME3A LINE L1 -9 6161 5664 2534 68 0 6 chr13 4967605 4967916 -96905253 - AluY SINE Alu -2 309 1 1064 250 113 46 chr13 4967916 4968155 -96905014 - L1ME3A LINE L1 -506 5664 5442 338 251 145 51 chr13 4968331 4968563 -96904606 + MLT1G3 LTR MaLR 156 447 -108 870 251 163 44 chr13 4968723 4969195 -96903974 - MLT1G LTR MaLR 0 590 30 1077 155 0 0 chr13 4969448 4969609 -96903560 - AluSg/x SINE Alu -15 295 135 581 265 105 43 chr13 4969620 4969993 -96903176 - L1ME3A LINE L1 -1036 5110 4715 255 61 0 0 chr13 4970004 4970037 -96903132 + (CA)n Simple_repeat Simple_repeat 2 34 0 863 245 88 58 chr13 4970037 4970592 -96902577 - L1ME3A LINE L1 -1531 4615 4044 7308 53 7 47 chr13 4970770 4971759 -96901410 - SVA Other Other -3 1383 434 261 0 0 0 chr13 4971876 4971905 -96901264 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 364 304 0 40 chr13 4972073 4972181 -96900988 + L2 LINE L2 3194 3298 -15 2247 100 0 3 chr13 4972181 4972482 -96900687 + AluY SINE Alu 1 300 -11 364 304 0 40 chr13 4972482 4972498 -96900671 + L2 LINE L2 3298 3313 0 692 11 11 0 chr13 4973723 4973810 -96899359 - L1PA3 LINE L1 0 6155 6068 1906 182 11 3 chr13 4974102 4974471 -96898698 - L1MB1 LINE L1 -103 6065 5694 272 172 10 91 chr13 4974477 4974576 -96898593 + L1MB1 LINE L1 5587 5677 -494 308 305 76 8 chr13 4974585 4974703 -96898466 - MIR SINE MIR -122 140 15 23 0 0 0 chr13 4974944 4974967 -96898202 + AT_rich Low_complexity Low_complexity 1 23 0 2456 70 0 0 chr13 4975386 4975687 -96897482 + AluY SINE Alu 1 301 -10 2964 200 16 8 chr13 4976552 4977260 -96895909 - L1MD2 LINE L1 -471 5888 5177 345 314 86 69 chr13 4977269 4977514 -96895655 + L1ME3 LINE L1 5618 5866 -296 359 31 31 155 chr13 4977530 4977691 -96895478 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 336 48 0 0 chr13 4978130 4978172 -96894997 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2462 80 3 16 chr13 4978466 4978780 -96894389 - AluY SINE Alu -1 310 1 2435 122 11 6 chr13 4979292 4979654 -96893515 + THE1B LTR MaLR 1 364 0 11102 95 33 2 chr13 4979654 4981186 -96891983 + THE1B-int LTR MaLR 1 1580 0 2542 112 3 8 chr13 4981186 4981552 -96891617 + THE1B LTR MaLR 1 364 0 649 158 73 43 chr13 4981850 4982014 -96891155 - MLT1E LTR MaLR -63 530 362 * 1507 199 13 10 chr13 4982006 4982317 -96890852 + MLT1A2 LTR MaLR 63 374 0 291 182 23 11 chr13 4982523 4982611 -96890558 + CT-rich Low_complexity Low_complexity 3 91 0 2478 68 3 0 chr13 4983185 4983493 -96889676 + AluY SINE Alu 2 310 -1 950 182 152 20 chr13 4983887 4984183 -96888986 + LTR54B LTR ERV1 3 337 -161 802 223 107 93 chr13 4984372 4984812 -96888357 - MER4C LTR ERV1 0 465 20 297 0 0 0 chr13 4984815 4984848 -96888321 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2009 108 7 0 chr13 4984848 4985126 -96888043 - AluSx SINE Alu -32 280 1 5873 145 45 91 chr13 4985127 4985528 -96887641 - LTR49-int LTR ERV1 -987 5344 4926 2424 69 0 7 chr13 4985528 4985834 -96887335 + AluY SINE Alu 1 304 -7 5873 145 45 91 chr13 4985834 4985877 -96887292 - LTR49-int LTR ERV1 -1405 4926 4883 2400 93 7 3 chr13 4985877 4986187 -96886982 + AluY SINE Alu 1 311 0 5873 145 45 91 chr13 4986187 4986284 -96886885 - LTR49-int LTR ERV1 -1448 4883 4783 2665 122 38 2 chr13 4986284 4986701 -96886468 - L1PA16 LINE L1 -9 6157 5726 5873 145 45 91 chr13 4986701 4987172 -96885997 - LTR49-int LTR ERV1 -1548 4783 4292 360 150 17 0 chr13 4987172 4987232 -96885937 + AluS SINE Alu 233 293 -7 5873 145 45 91 chr13 4987232 4987723 -96885446 - LTR49-int LTR ERV1 -2039 4292 3853 2216 112 13 0 chr13 4987723 4988026 -96885143 + AluSq SINE Alu 1 307 -6 5873 145 45 91 chr13 4988026 4988071 -96885098 - LTR49-int LTR ERV1 -2478 3853 3807 1201 99 17 28 chr13 4988071 4988252 -96884917 - 7SLRNA srpRNA srpRNA -9 311 133 2526 196 69 94 chr13 4988252 4989249 -96883920 - LTR49-int LTR ERV1 -1606 3274 2303 3883 30 17 0 chr13 4989252 4989725 -96883444 + LTR2B LTR ERV1 10 490 0 1136 227 42 73 chr13 4989725 4990285 -96882884 - LTR49-int LTR ERV1 -4263 3274 1580 462 222 26 98 chr13 4990254 4990407 -96882762 - LTR49-int LTR ERV1 -4146 2185 2044 * 1270 151 36 0 chr13 4990413 4990638 -96882531 + MER50 LTR ERV1 1 233 -501 2409 72 0 3 chr13 4990829 4991135 -96882034 - AluY SINE Alu -6 305 1 2192 222 62 22 chr13 4991135 4991780 -96881389 - Tigger6a DNA MER2_type -64 1019 349 2012 92 14 24 chr13 4991802 4992094 -96881075 - AluSx SINE Alu -23 289 1 180 0 0 0 chr13 4992275 4992295 -96880874 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 107 0 0 chr13 4992318 4992477 -96880692 - AluSq SINE Alu -33 280 122 183 152 0 0 chr13 4992477 4992523 -96880646 + (TA)n Simple_repeat Simple_repeat 2 47 0 885 88 72 0 chr13 4992526 4992651 -96880518 - AluSg SINE Alu -176 134 1 240 226 0 0 chr13 4993544 4993606 -96879563 + T-rich Low_complexity Low_complexity 1 62 0 318 286 188 45 chr13 4993609 4993763 -96879406 - MIR3 SINE MIR -13 195 20 26 30 0 0 chr13 4995252 4995285 -96877884 + AT_rich Low_complexity Low_complexity 1 33 0 2126 78 34 3 chr13 4995727 4996020 -96877149 - AluY SINE Alu -9 302 1 1122 138 16 0 chr13 4996202 4996391 -96876778 + MER4B LTR ERV1 400 591 -19 786 85 53 116 chr13 4996391 4996580 -96876589 + PABL_A-int LTR ERV1 629 805 -4210 * 3619 73 93 41 chr13 4996577 4996776 -96876393 + PABL_A-int LTR ERV1 1803 1990 -4608 1985 124 22 38 chr13 4996776 4997091 -96876078 - AluSp SINE Alu -3 310 1 3619 73 93 41 chr13 4997091 4997550 -96875619 + PABL_A-int LTR ERV1 1990 2495 -4103 1064 145 90 10 chr13 4997550 4997750 -96875419 - LTR8 LTR ERV1 -434 257 42 910 83 8 0 chr13 4997750 4997871 -96875298 - AluSp SINE Alu -16 297 176 3703 60 43 0 chr13 4997871 4998341 -96874828 + LTR2B LTR ERV1 1 490 0 5360 92 58 19 chr13 4998341 4999200 -96873969 + Harlequin LTR ERV1 1 893 -6003 * 6257 68 46 0 chr13 4999195 5000153 -96873016 + Harlequin LTR ERV1 1572 2573 -4323 23074 112 11 8 chr13 5000154 5003686 -96869483 + Harlequin LTR ERV1 3353 6892 -4 3707 55 45 0 chr13 5003689 5004158 -96869011 + LTR2B LTR ERV1 1 490 0 352 105 35 0 chr13 5004158 5004215 -96868954 - AluSp SINE Alu -124 179 121 862 132 0 22 chr13 5004215 5004351 -96868818 - AluJo/FLAM SINE Alu -169 133 1 2043 83 0 90 chr13 5004351 5004397 -96868772 + MER4A-int LTR ERV1 2684 2733 -3865 2538 77 0 3 chr13 5004397 5004709 -96868460 - AluY SINE Alu 0 311 1 2043 83 0 90 chr13 5004709 5005094 -96868075 + MER4A-int LTR ERV1 2733 3076 -3522 8458 104 60 37 chr13 5005274 5005367 -96867802 + MER4A-int LTR ERV1 4953 5042 -1556 2058 94 7 7 chr13 5005367 5005653 -96867516 + AluY SINE Alu 1 286 -25 8458 104 60 37 chr13 5005653 5007169 -96866000 + MER4A-int LTR ERV1 5042 6598 0 250 111 22 22 chr13 5007198 5007243 -96865926 + MER4A LTR ERV1 54 98 -566 1719 120 8 46 chr13 5007243 5007601 -96865568 + MER4A LTR ERV1 262 664 0 * 2741 170 8 40 chr13 5007601 5008113 -96865056 + MER50 LTR ERV1 228 722 -12 231 203 0 0 chr13 5008184 5008243 -96864926 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 * 432 244 43 43 chr13 5008239 5008385 -96864784 - MER41-int LTR ERV1 -3703 2243 2121 2584 113 86 60 chr13 5008482 5008935 -96864234 + MER4C LTR ERV1 1 465 0 317 185 62 0 chr13 5008960 5009025 -96864144 + LTR9 LTR ERV1 544 612 0 6689 157 114 75 chr13 5009025 5009790 -96863379 + LTR9-int LTR ERV1 283 1017 -5581 321 26 0 0 chr13 5009790 5009828 -96863341 + (TG)n Simple_repeat Simple_repeat 2 39 0 6689 157 114 75 chr13 5009828 5010621 -96862548 + LTR9-int LTR ERV1 1017 1995 -4603 2072 142 0 0 chr13 5010621 5010916 -96862253 + AluSx SINE Alu 1 295 -17 6689 157 114 75 chr13 5010916 5011427 -96861742 + LTR9-int LTR ERV1 1995 2485 -4113 416 45 80 0 chr13 5011590 5011678 -96861491 + GA-rich Low_complexity Low_complexity 2 96 0 4085 147 82 57 chr13 5012599 5012632 -96860537 + LTR9-int LTR ERV1 2924 2955 -3643 2231 99 3 0 chr13 5012632 5012925 -96860244 + AluY SINE Alu 1 294 -17 4085 147 82 57 chr13 5012925 5013925 -96859244 + LTR9-int LTR ERV1 2955 3983 -2615 4735 119 122 46 chr13 5013927 5015367 -96857802 - pTR5 LTR ERV1 0 2438 743 6853 139 56 50 chr13 5015367 5016754 -96856415 + LTR9-int LTR ERV1 3979 5357 -1241 408 20 0 0 chr13 5016754 5016803 -96856366 + (TA)n Simple_repeat Simple_repeat 2 50 0 1936 151 0 0 chr13 5016808 5017092 -96856077 - AluSx SINE Alu -28 284 1 6853 139 56 50 chr13 5017092 5017129 -96856040 + LTR9-int LTR ERV1 5360 5417 -1181 829 179 155 29 chr13 5017137 5017344 -96855825 + MER4C LTR ERV1 1 233 -232 3589 112 47 4 chr13 5017359 5017849 -96855320 + MER9 LTR ERVK 1 511 0 1051 62 0 0 chr13 5017849 5017979 -96855190 + HERVK9 LTR ERVK 1 130 -5786 700 255 60 39 chr13 5017991 5018367 -96854802 + MER4C LTR ERV1 141 465 0 643 167 35 21 chr13 5018452 5018596 -96854573 + MER4C-int LTR ERV1 109 254 -6344 227 213 21 0 chr13 5018781 5018828 -96854341 + LTR49 LTR ERV1 261 308 -287 554 174 84 58 chr13 5018850 5019005 -96854164 + MER4C-int LTR ERV1 995 1153 -5178 2808 223 30 15 chr13 5019276 5021137 -96852032 + L1MB8 LINE L1 2865 6169 -9 186 43 0 0 chr13 5021145 5021168 -96852001 + (CA)n Simple_repeat Simple_repeat 1 23 0 3260 271 32 36 chr13 5021176 5022267 -96850902 - MER110-int LTR ERV1 -1547 3100 2014 2221 189 62 77 chr13 5022283 5022385 -96850784 - MLT1A1-int LTR MaLR -1180 555 453 2422 100 3 0 chr13 5022385 5022695 -96850474 + AluSx SINE Alu 1 311 -1 2221 189 62 77 chr13 5022695 5023154 -96850015 - MLT1A1-int LTR MaLR -1282 453 2 1091 188 139 102 chr13 5023155 5023507 -96849662 - MLT1A1 LTR MaLR 0 365 1 2453 94 0 0 chr13 5024100 5024409 -96848760 - AluSq SINE Alu -4 309 1 456 333 76 54 chr13 5024473 5024653 -96848516 - MER110-int LTR ERV1 -4121 526 351 1628 118 165 4 chr13 5024653 5024908 -96848261 + AluSx SINE Alu 1 296 -16 456 333 76 54 chr13 5024908 5025018 -96848151 - MER110-int LTR ERV1 -4296 351 245 2305 94 0 3 chr13 5025018 5025315 -96847854 - AluSc SINE Alu -13 296 1 456 333 76 54 chr13 5025315 5025431 -96847738 - MER110-int LTR ERV1 -4402 245 110 252 0 0 0 chr13 5026043 5026071 -96847098 + (A)n Simple_repeat Simple_repeat 1 28 0 721 161 8 16 chr13 5026086 5026210 -96846959 - THE1C LTR MaLR -252 123 1 7564 223 77 17 chr13 5026211 5029178 -96843991 + L1ME1 LINE L1 2894 6059 -107 2399 94 0 0 chr13 5029178 5029486 -96843683 - AluSg SINE Alu -2 308 1 7564 223 77 17 chr13 5029486 5029595 -96843574 + L1ME1 LINE L1 6059 6160 -6 246 301 96 19 chr13 5029612 5029768 -96843401 + L1M2 LINE L1 2290 2457 -4392 22 0 0 0 chr13 5029836 5029858 -96843311 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 0 0 chr13 5031075 5031124 -96842045 + (TG)n Simple_repeat Simple_repeat 1 49 0 5589 147 43 11 chr13 5033653 5034130 -96839039 - L1MA5A LINE L1 -1 6296 5836 402 57 0 0 chr13 5034130 5034183 -96838986 + (TG)n Simple_repeat Simple_repeat 2 54 0 5589 147 43 11 chr13 5034183 5034759 -96838410 - L1MA5A LINE L1 -461 5836 5209 1386 172 4 4 chr13 5034744 5035005 -96838164 + L1MA5A LINE L1 4963 5223 -923 * 889 282 179 34 chr13 5035295 5036732 -96836437 + L1ME2 LINE L1 3953 5593 -743 202 255 43 0 chr13 5036758 5036805 -96836364 - L2 LINE L2 -16 3297 3249 310 277 39 31 chr13 5036955 5037085 -96836084 + L1ME2 LINE L1 5758 5888 -276 5704 54 4 16 chr13 5037423 5037780 -96835389 + L1PA7 LINE L1 5472 5819 -335 2414 91 0 0 chr13 5037780 5038087 -96835082 + AluY SINE Alu 1 307 -4 5704 54 4 16 chr13 5038087 5038415 -96834754 + L1PA7 LINE L1 5819 6149 -5 21 0 0 0 chr13 5038415 5038436 -96834733 + AT_rich Low_complexity Low_complexity 1 21 0 509 281 104 58 chr13 5038529 5038656 -96834513 + L1MC4a LINE L1 4027 4147 -1999 1590 189 3 22 chr13 5038656 5038969 -96834200 + AluJo SINE Alu 1 307 -5 509 281 104 58 chr13 5038969 5039446 -96833723 + L1MC4a LINE L1 4147 4659 -1487 247 360 61 19 chr13 5039719 5039933 -96833236 + L1MC4a LINE L1 5376 5598 -523 267 289 30 30 chr13 5040141 5040276 -96832893 + L1MC4a LINE L1 5800 5934 -1874 393 275 119 82 chr13 5040936 5041289 -96831880 - L1M2 LINE L1 -5907 942 577 3698 157 36 22 chr13 5041757 5042445 -96830724 - ERVL-B2 LTR ERVL -1634 4130 3433 6533 155 35 21 chr13 5042452 5043010 -96830159 - ERVL-B2 LTR ERVL -2909 2855 2307 1635 141 131 20 chr13 5043010 5043315 -96829854 + MER44D DNA MER2_type 1 609 0 6533 155 35 21 chr13 5043315 5043862 -96829307 - ERVL-B2 LTR ERVL -3457 2307 1734 856 213 0 0 chr13 5043862 5044012 -96829157 - FRAM SINE Alu -25 151 2 7943 201 68 10 chr13 5044012 5045667 -96827502 - ERVL-B2 LTR ERVL -4013 1751 2 2290 181 138 7 chr13 5045672 5045710 -96827459 - MLT2B2 LTR ERVL -8 507 475 210 91 0 0 chr13 5045710 5045743 -96827426 + (TA)n Simple_repeat Simple_repeat 1 33 0 2290 181 138 7 chr13 5045743 5046152 -96827017 - MLT2B2 LTR ERVL -40 475 1 5484 52 33 13 chr13 5050250 5050319 -96822850 - MER11D LTR ERVK -195 702 636 2897 19 0 0 chr13 5050319 5050636 -96822533 - AluYb8 SINE Alu -1 317 1 5484 52 33 13 chr13 5050636 5051254 -96821915 - MER11D LTR ERVK -261 636 1 1602 195 118 8 chr13 5051263 5051627 -96821542 - MLT2B3 LTR ERVL -147 407 4 248 291 52 87 chr13 5051858 5051973 -96821196 + MIR SINE MIR 74 183 -79 1742 153 7 23 chr13 5051973 5052274 -96820895 - AluSx SINE Alu -16 296 1 248 291 52 87 chr13 5052274 5052330 -96820839 + MIR SINE MIR 183 239 -23 196 204 91 0 chr13 5052296 5052340 -96820829 + L2 LINE L2 3251 3298 -15 * 193 296 143 0 chr13 5052473 5052571 -96820598 + L2 LINE L2 3183 3294 -19 2275 95 7 0 chr13 5053163 5053469 -96819700 - AluY SINE Alu -3 308 1 1329 244 103 44 chr13 5053476 5053930 -96819239 + LTR26E LTR ERV1 123 608 0 232 244 37 73 chr13 5053930 5053973 -96819196 - MER57B LTR ERV1 -83 351 312 1069 134 120 49 chr13 5054089 5054373 -96818796 + L1MA8 LINE L1 5983 6286 -5 265 262 60 0 chr13 5055268 5055352 -96817817 + MIR SINE MIR 81 169 -93 1220 149 45 0 chr13 5056065 5056266 -96816903 + MER2 DNA MER2_type 1 210 -135 297 188 38 75 chr13 5056292 5056372 -96816797 + MER2 DNA MER2_type 268 344 -1 2404 152 52 2 chr13 5056593 5057001 -96816168 + MSTA LTR MaLR 1 428 0 181 0 69 0 chr13 5058063 5058092 -96815077 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 273 231 15 0 chr13 5058139 5058204 -96814965 + MER34 LTR ERV1 25 90 -452 268 280 59 8 chr13 5058230 5058348 -96814821 + LTR48B LTR ERV1 141 264 -380 324 70 0 0 chr13 5058467 5058510 -96814659 + (TA)n Simple_repeat Simple_repeat 1 43 0 2381 55 41 0 chr13 5058948 5059240 -96813929 - AluY SINE Alu -7 304 1 314 291 17 84 chr13 5060042 5060221 -96812948 - L1ME4a LINE L1 -9 6112 5946 238 263 49 29 chr13 5060365 5060570 -96812599 - L1ME4a LINE L1 -304 5817 5609 227 184 0 0 chr13 5060572 5060610 -96812559 - tRNA-Arg-AGA tRNA tRNA -38 38 1 2236 92 3 0 chr13 5061415 5061748 -96811421 + AluSp SINE Alu 1 334 0 2451 56 0 31 chr13 5061758 5062078 -96811091 + AluY SINE Alu 1 310 -1 195 129 0 0 chr13 5062122 5062153 -96811016 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 362 279 10 10 chr13 5062153 5062257 -96810912 + L1M4 LINE L1 548 651 -5891 2257 74 3 10 chr13 5062359 5062658 -96810511 - AluY SINE Alu -14 297 1 2559 219 18 58 chr13 5062660 5063495 -96809674 + L1M4 LINE L1 673 1471 -5071 2055 134 23 0 chr13 5063495 5063794 -96809375 + AluSx SINE Alu 1 306 -6 2559 219 18 58 chr13 5063794 5063855 -96809314 + L1M4 LINE L1 1471 1533 -5009 930 303 32 23 chr13 5063869 5064722 -96808447 + L1M4 LINE L1 1747 2718 -3926 2579 68 0 0 chr13 5064722 5065033 -96808136 + AluY SINE Alu 1 311 0 381 203 16 23 chr13 5065061 5065189 -96807980 + GA-rich Low_complexity Low_complexity 5 131 0 217 267 0 0 chr13 5065356 5065401 -96807768 + MIR SINE MIR 197 241 -21 27 0 0 0 chr13 5065666 5065693 -96807476 + AT_rich Low_complexity Low_complexity 1 27 0 2155 103 0 34 chr13 5065706 5066027 -96807142 - AluSg SINE Alu 0 310 1 1166 177 39 120 chr13 5066675 5067059 -96806110 - MLT1A1 LTR MaLR -12 353 1 200 254 17 17 chr13 5067162 5067221 -96805948 - MIR SINE MIR -6 256 198 2239 113 7 3 chr13 5067411 5067721 -96805448 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr13 5067914 5067944 -96805225 + AT_rich Low_complexity Low_complexity 1 30 0 1314 216 113 30 chr13 5068453 5068879 -96804290 + MLT1C LTR MaLR 7 467 0 262 253 70 70 chr13 5069876 5069942 -96803227 + MIR SINE MIR 6 71 -191 2206 157 49 53 chr13 5069942 5070394 -96802775 - LTR47A LTR ERVL -2 450 1 262 253 70 70 chr13 5070394 5070485 -96802684 + MIR SINE MIR 70 163 -99 326 220 144 3 chr13 5070545 5070660 -96802509 - MER97a DNA MER1_type? -725 169 44 1210 268 65 31 chr13 5071750 5071934 -96801235 - L1M4 LINE L1 -2391 3755 3579 2132 112 20 0 chr13 5071934 5072228 -96800941 + AluSx SINE Alu 1 300 -12 1210 268 65 31 chr13 5072228 5072786 -96800383 - L1M4 LINE L1 -2567 3579 2988 501 317 76 62 chr13 5072845 5072990 -96800179 - L1M4 LINE L1 -3275 2871 2730 1958 138 0 10 chr13 5072990 5073287 -96799882 + AluSx SINE Alu 1 294 -18 501 317 76 62 chr13 5073287 5073642 -96799527 - L1M4 LINE L1 -3416 2730 2364 25 95 0 0 chr13 5073678 5073752 -96799417 + AT_rich Low_complexity Low_complexity 1 74 0 318 204 21 43 chr13 5073897 5073990 -96799179 - L1ME4a LINE L1 -159 5962 5872 477 0 0 0 chr13 5075113 5075166 -96798003 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 399 324 87 18 chr13 5075456 5075675 -96797494 - MIR SINE MIR -16 246 13 1004 205 142 15 chr13 5075720 5076057 -96797112 - LTR25 LTR ERV1 0 794 415 485 131 12 0 chr13 5076284 5076368 -96796801 - MER61E LTR ERV1 -484 85 1 3208 214 33 42 chr13 5077141 5078049 -96795120 - L1M3 LINE L1 -591 5592 4692 2341 107 0 0 chr13 5078049 5078349 -96794820 + AluSg SINE Alu 1 300 -10 3208 214 33 42 chr13 5078349 5078712 -96794457 - L1M3 LINE L1 -1491 4692 4327 2005 140 3 22 chr13 5078903 5079218 -96793951 + AluSc SINE Alu 1 309 0 322 315 48 5 chr13 5079402 5079635 -96793534 - L1ME4a LINE L1 -521 5641 5383 2367 122 49 35 chr13 5079985 5080411 -96792758 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr13 5081194 5081230 -96791939 + AT_rich Low_complexity Low_complexity 1 36 0 2370 95 0 7 chr13 5081313 5081619 -96791550 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr13 5082332 5082353 -96790816 + AT_rich Low_complexity Low_complexity 1 21 0 2120 137 116 18 chr13 5082640 5083028 -96790141 - MSTA LTR MaLR -2 426 1 273 196 21 10 chr13 5084307 5084404 -96788765 + (TA)n Simple_repeat Simple_repeat 1 98 0 419 305 62 22 chr13 5084419 5084695 -96788474 + L1MEd LINE L1 1040 1371 -4885 2397 197 112 6 chr13 5084759 5085418 -96787751 - L1MB7 LINE L1 -9 6175 5447 28 0 0 0 chr13 5085471 5085499 -96787670 + AT_rich Low_complexity Low_complexity 1 28 0 2111 134 0 0 chr13 5085660 5085959 -96787210 + AluSx SINE Alu 2 300 -12 184 375 10 10 chr13 5086136 5086232 -96786937 - L2 LINE L2 -1240 2074 1979 715 135 28 17 chr13 5086331 5086509 -96786660 + (TG)n Simple_repeat Simple_repeat 1 180 0 2334 75 3 3 chr13 5087605 5087912 -96785257 - AluY SINE Alu -4 307 1 1024 141 33 38 chr13 5088599 5088812 -96784357 + MSTC LTR MaLR 1 212 -216 182 275 0 0 chr13 5088986 5089026 -96784143 - L2 LINE L2 -20 3252 3213 22 56 0 0 chr13 5089522 5089558 -96783611 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 5089744 5089773 -96783396 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr13 5090088 5090134 -96783035 + AT_rich Low_complexity Low_complexity 1 46 0 451 301 117 8 chr13 5090403 5090652 -96782517 + L1MEc LINE L1 47 322 -6074 315 277 19 25 chr13 5090672 5090831 -96782338 + L1MEc LINE L1 362 519 -5877 3157 61 16 0 chr13 5091217 5091641 -96781528 - MER11B LTR ERVK -805 431 1 8809 191 30 8 chr13 5091643 5093649 -96779520 + L1PA15 LINE L1 3054 5149 -1016 2216 114 140 8 chr13 5093649 5094027 -96779142 + MSTA LTR MaLR 1 428 0 8809 191 30 8 chr13 5094027 5095063 -96778106 + L1PA15 LINE L1 5149 6161 -4 1997 182 26 5 chr13 5095059 5095487 -96777682 + L1MC3 LINE L1 5461 5897 -1888 * 915 349 49 55 chr13 5095511 5096929 -96776240 + ERVL LTR ERVL 3915 5323 -441 2306 71 7 14 chr13 5097240 5097534 -96775635 - AluY SINE Alu -15 296 5 657 318 87 7 chr13 5097646 5097932 -96775237 + LTR16A1 LTR ERVL 148 456 -1 3748 93 2 8 chr13 5098245 5098759 -96774410 - MER9 LTR ERVK 0 511 1 2262 53 0 0 chr13 5098759 5099041 -96774128 - HERVK9 LTR ERVK 0 5916 5635 7319 96 4 6 chr13 5099137 5100193 -96772976 - HERVK9 LTR ERVK -282 5634 4581 1712 64 0 9 chr13 5100191 5100424 -96772745 - HERVK9 LTR ERVK -1975 3941 3711 * 10697 60 0 1 chr13 5100424 5101795 -96771374 - HERVK9 LTR ERVK -3130 2786 1417 1912 90 0 14 chr13 5101898 5102187 -96770982 - HERVK9 LTR ERVK -4519 1397 1113 2797 63 7 85 chr13 5102188 5102648 -96770521 - HERVK9 LTR ERVK -5348 568 145 232 356 132 15 chr13 5102906 5103111 -96770058 - L3 LINE CR1 -708 869 641 187 229 0 42 chr13 5103294 5103342 -96769827 + L2 LINE L2 3267 3312 -1 2028 156 56 67 chr13 5103726 5103926 -96769243 + MSTB LTR MaLR 1 202 -224 2358 96 0 3 chr13 5103926 5104227 -96768942 + AluSg SINE Alu 1 300 -10 2028 156 56 67 chr13 5104227 5104457 -96768712 + MSTB LTR MaLR 202 426 0 1141 184 49 0 chr13 5104828 5105072 -96768097 + L1MA9 LINE L1 6019 6274 -38 1834 142 43 13 chr13 5106784 5107086 -96766083 + AluSx SINE Alu 1 311 -1 586 285 109 0 chr13 5107243 5107408 -96765761 + MER5A DNA MER1_type 7 189 0 269 313 50 50 chr13 5107482 5107661 -96765508 + MIR SINE MIR 71 249 -13 205 284 74 0 chr13 5110360 5110441 -96762728 + MIR SINE MIR 116 202 -60 1265 160 9 5 chr13 5110855 5111067 -96762102 - pTR5 LTR ERV1 -2045 393 181 258 314 48 0 chr13 5111069 5111174 -96761995 - LTR30 LTR ERV1 -69 653 544 3994 177 79 38 chr13 5111178 5112145 -96761024 - pTR5 LTR ERV1 -417 2021 740 186 145 0 53 chr13 5115435 5115511 -96757658 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 204 245 0 0 chr13 5116990 5117039 -96756130 + T-rich Low_complexity Low_complexity 1 49 0 217 200 40 0 chr13 5117635 5117685 -96755484 + L2 LINE L2 3221 3272 0 245 301 126 10 chr13 5117868 5117971 -96755198 - L1MC4 LINE L1 -1 8041 7927 372 378 92 22 chr13 5118421 5118789 -96754380 - L1ME LINE L1 -466 5698 5305 631 349 90 30 chr13 5118953 5119179 -96753990 - L1ME LINE L1 -838 5308 5097 2166 120 40 0 chr13 5119179 5119479 -96753690 + AluSx SINE Alu 1 312 0 631 349 90 30 chr13 5119479 5120500 -96752669 - L1ME LINE L1 -1049 5097 3987 1584 191 65 3 chr13 5121112 5121162 -96752007 - L1MC3 LINE L1 -740 7045 7000 1470 100 4 123 chr13 5121162 5121422 -96751747 - AluSc SINE Alu -8 301 73 1584 191 65 3 chr13 5121422 5121712 -96751457 - L1MC3 LINE L1 -785 7000 6684 1386 258 33 0 chr13 5121716 5122135 -96751034 + L1MB8 LINE L1 1046 1478 -4906 690 185 7 34 chr13 5122136 5122282 -96750887 - MER4D LTR ERV1 0 903 762 * 1958 141 141 5 chr13 5122277 5122653 -96750516 + MER9 LTR ERVK 85 511 0 2213 171 29 113 chr13 5122653 5123337 -96749832 - MER4E LTR ERV1 -135 644 18 980 276 39 3 chr13 5123347 5123684 -96749485 + L1MB8 LINE L1 1500 1848 -4536 7230 214 44 31 chr13 5123840 5124716 -96748453 + L1MB8 LINE L1 3325 4188 -2226 2090 144 0 10 chr13 5124716 5125021 -96748148 + AluSg SINE Alu 1 302 -8 7230 214 44 31 chr13 5125021 5127183 -96745986 + L1MB8 LINE L1 4188 6408 -6 452 256 98 47 chr13 5127346 5127643 -96745526 + L1MC/D LINE L1 3682 3993 -2153 558 310 107 47 chr13 5127669 5128117 -96745052 + REP3 LTR ERV 1 475 -87 317 354 149 24 chr13 5128293 5128581 -96744588 + L1MC/D LINE L1 4098 4421 -1725 318 267 13 0 chr13 5128671 5128746 -96744423 + LTR33 LTR ERVL 103 178 -343 413 256 0 0 chr13 5128955 5129045 -96744124 + LTR33A LTR ERVL 434 523 0 313 343 28 14 chr13 5129051 5129194 -96743975 + L1MC/D LINE L1 4474 4618 -1528 326 240 39 45 chr13 5129381 5129560 -96743609 + L1P LINE L1 4886 5063 -1083 2098 117 6 46 chr13 5129715 5130041 -96743128 + AluSq SINE Alu 1 313 0 325 326 60 18 chr13 5130084 5130450 -96742719 + L1MC/D LINE L1 5258 5637 -484 800 248 40 56 chr13 5130450 5130640 -96742529 - MLT1B LTR MaLR 0 390 205 267 31 0 0 chr13 5130640 5130672 -96742497 + (TG)n Simple_repeat Simple_repeat 1 32 0 800 248 40 56 chr13 5130672 5130784 -96742385 - MLT1B LTR MaLR -185 205 93 332 174 0 14 chr13 5131697 5131766 -96741403 - MLT1E1 LTR MaLR -402 252 185 226 219 125 0 chr13 5131782 5131846 -96741323 - MLT1E1 LTR MaLR -573 81 10 1078 264 34 3 chr13 5132721 5133070 -96740099 + MLT1A1 LTR MaLR 4 363 -2 408 254 39 8 chr13 5133085 5133215 -96739954 + MIR SINE MIR 50 183 -79 798 199 28 0 chr13 5134126 5134307 -96738862 + L1MB7 LINE L1 5282 5467 -707 718 209 4 8 chr13 5134310 5134546 -96738623 + GA-rich Low_complexity Low_complexity 1 235 0 1131 98 0 0 chr13 5134561 5134724 -96738445 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 403 179 21 32 chr13 5134892 5134987 -96738182 + L1MB7 LINE L1 5485 5578 -602 801 251 45 31 chr13 5135027 5135314 -96737855 + L1MB7 LINE L1 5819 6109 -75 268 225 0 70 chr13 5135417 5135488 -96737681 + L1MB7 LINE L1 6058 6123 -61 196 229 0 0 chr13 5135518 5135566 -96737603 - MIR SINE MIR -115 147 100 1714 116 88 52 chr13 5139764 5140126 -96733043 - THE1C LTR MaLR 0 375 1 203 254 14 28 chr13 5141553 5141624 -96731545 - L2 LINE L2 -77 3195 3126 252 245 59 10 chr13 5142724 5142826 -96730343 - MLT1D LTR MaLR -135 370 264 1128 178 50 0 chr13 5143476 5143678 -96729491 - MSTB LTR MaLR 0 426 215 1303 182 88 61 chr13 5143692 5143825 -96729344 + MER66B LTR ERV1 115 243 -243 2014 129 0 62 chr13 5143825 5144134 -96729035 + AluSx SINE Alu 5 294 -18 1303 182 88 61 chr13 5144134 5144362 -96728807 + MER66B LTR ERV1 243 486 0 734 223 0 0 chr13 5144446 5144585 -96728584 + AluJb SINE Alu 137 275 -37 255 313 22 37 chr13 5144605 5144739 -96728430 + L1MC4 LINE L1 7693 7824 -218 361 242 50 42 chr13 5144746 5144866 -96728303 + L1MC4 LINE L1 7922 8042 0 231 321 107 5 chr13 5145157 5145344 -96727825 + HAL1b LINE L1 883 1088 -260 6147 219 46 13 chr13 5146012 5146589 -96726580 - L1MC3 LINE L1 0 7785 7229 2268 150 34 29 chr13 5146589 5147035 -96726134 + MER83 LTR ERV1 1 448 0 6147 219 46 13 chr13 5147035 5147970 -96725199 - L1MC3 LINE L1 -556 7229 6223 180 0 0 0 chr13 5148120 5148140 -96725029 + (CACAA)n Simple_repeat Simple_repeat 3 22 0 391 99 10 59 chr13 5149017 5149118 -96724051 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 872 117 5 126 chr13 5149224 5149401 -96723768 - MER53 DNA DNA 0 189 41 2122 126 0 0 chr13 5149401 5149687 -96723482 - AluSq SINE Alu -27 286 1 872 117 5 126 chr13 5149687 5149723 -96723446 - MER53 DNA DNA -148 41 2 1373 171 52 42 chr13 5149890 5150040 -96723129 + MLT1A2 LTR MaLR 6 153 -221 225 0 0 0 chr13 5150040 5150065 -96723104 + (TC)n Simple_repeat Simple_repeat 1 25 0 1373 171 52 42 chr13 5150065 5150224 -96722945 + MLT1A2 LTR MaLR 153 318 -56 196 269 90 0 chr13 5150394 5150461 -96722708 + MIR SINE MIR 65 137 -71 270 0 0 0 chr13 5150639 5150669 -96722500 + (CA)n Simple_repeat Simple_repeat 2 31 0 262 277 9 18 chr13 5351871 5351983 -96521186 + GA-rich Low_complexity Low_complexity 2 112 0 499 137 0 0 chr13 5352252 5352325 -96520844 - AluSx SINE Alu -16 296 224 1435 144 14 0 chr13 5352405 5352620 -96520549 - AluSx SINE Alu -94 218 1 28 48 0 0 chr13 5352627 5352669 -96520500 + AT_rich Low_complexity Low_complexity 1 42 0 229 361 14 0 chr13 5352924 5352996 -96520173 + MIR SINE MIR 39 111 -97 2144 117 0 32 chr13 5354137 5354453 -96518716 - AluSx SINE Alu -6 306 1 362 333 74 0 chr13 5354644 5354779 -96518390 + MIR SINE MIR 21 165 -97 187 259 103 0 chr13 5354873 5354931 -96518238 + MIR SINE MIR 187 250 -12 2729 36 0 0 chr13 5355414 5355723 -96517446 + AluY SINE Alu 1 309 -2 518 316 111 21 chr13 5356293 5356854 -96516315 - L2 LINE L2 -54 3259 2636 304 314 98 20 chr13 5356941 5357043 -96516126 - L2 LINE L2 -20 3252 3143 192 40 0 0 chr13 5358079 5358104 -96515065 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 59 0 0 chr13 5358127 5358161 -96515008 + (TG)n Simple_repeat Simple_repeat 2 35 0 339 314 63 22 chr13 5358251 5358566 -96514603 + L1M4 LINE L1 2785 3112 -3034 746 276 71 4 chr13 5358585 5358810 -96514359 + MIR SINE MIR 20 259 -3 192 77 0 0 chr13 5358849 5358875 -96514294 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2087 65 4 11 chr13 5358877 5359140 -96514029 - AluY SINE Alu -17 294 34 1906 114 4 0 chr13 5359278 5359541 -96513628 - AluY SINE Alu -47 264 1 664 271 77 28 chr13 5359587 5359912 -96513257 + L1M4 LINE L1 4634 4974 -1172 644 298 53 26 chr13 5359912 5360140 -96513029 - L2 LINE L2 -1385 1929 1696 306 277 53 0 chr13 5360183 5360277 -96512892 - L2 LINE L2 -1605 1709 1611 963 286 121 54 chr13 5360277 5360682 -96512487 - L2 LINE L2 -2636 678 247 212 294 0 0 chr13 5360692 5360743 -96512426 - L2 LINE L2 -3186 128 78 689 307 79 36 chr13 5361223 5361640 -96511529 - MLT1J2 LTR MaLR -15 435 1 2268 68 57 0 chr13 5361820 5362100 -96511069 + AluY SINE Alu 1 296 -15 3709 145 29 19 chr13 5362297 5362912 -96510257 - L1PA15 LINE L1 -1 6164 5544 21 71 0 0 chr13 5363055 5363097 -96510072 + AT_rich Low_complexity Low_complexity 1 42 0 1294 260 94 2 chr13 5363151 5363651 -96509518 + MER114 LTR ERV 20 565 -83 223 221 143 13 chr13 5363679 5363756 -96509413 - MIR SINE MIR -98 164 78 422 101 101 0 chr13 5363828 5363897 -96509272 - LTR12 LTR ERV1 -288 426 351 267 155 14 99 chr13 5363899 5363970 -96509199 - LTR30 LTR ERV1 -108 614 550 1150 116 233 5 chr13 5363970 5364185 -96508984 - LTR12 LTR ERV1 -450 264 1 227 319 44 44 chr13 5364709 5364822 -96508347 - MIR SINE MIR -66 142 30 2225 148 43 6 chr13 5365274 5365626 -96507543 - MLT1A1 LTR MaLR 0 365 1 1463 114 18 35 chr13 5365985 5366212 -96506957 - AluSg/x SINE Alu -11 299 77 2217 241 90 29 chr13 5367207 5367382 -96505787 - L1ME2 LINE L1 -16 6148 5985 2178 113 13 0 chr13 5367382 5367683 -96505486 - AluSq SINE Alu -8 305 1 2217 241 90 29 chr13 5367683 5368338 -96504831 - L1ME2 LINE L1 -179 5985 5254 694 138 69 15 chr13 5368351 5368481 -96504688 - MLT1D LTR MaLR 0 505 369 2245 114 3 0 chr13 5368492 5368798 -96504371 - AluSx SINE Alu -5 307 1 339 189 53 11 chr13 5368807 5368902 -96504267 - L1ME2 LINE L1 -981 5165 5067 * 1738 261 82 8 chr13 5368877 5369592 -96503577 - L1ME2 LINE L1 -3128 3018 2251 2240 75 0 3 chr13 5369877 5370212 -96502957 - AluY SINE Alu 0 334 1 2275 57 54 3 chr13 5370725 5371021 -96502148 + AluY SINE Alu 1 311 0 2478 90 0 0 chr13 5371289 5371590 -96501579 + AluSq SINE Alu 1 301 -12 225 302 0 23 chr13 5373180 5373266 -96499903 - L1MC/D LINE L1 -1876 5932 5849 2156 133 0 0 chr13 5373291 5373592 -96499577 - AluSx SINE Alu -11 301 1 922 190 42 28 chr13 5373629 5373845 -96499324 - MER20 DNA MER1_type 0 219 1 1217 247 105 32 chr13 5373953 5374580 -96498589 - Charlie2a DNA MER1_type -1174 1688 1016 236 376 38 55 chr13 5374620 5374808 -96498361 - L2 LINE L2 -445 2869 2686 2627 33 0 3 chr13 5374808 5375107 -96498062 + AluY SINE Alu 1 298 -13 236 376 38 55 chr13 5375107 5375208 -96497961 - L2 LINE L2 -628 2686 2585 288 308 107 37 chr13 5375212 5375511 -96497658 - L2 LINE L2 -1001 2313 1994 4055 122 30 38 chr13 5375525 5375819 -96497350 + MER39B LTR ERV1 1 296 -357 2301 73 0 23 chr13 5375819 5376120 -96497049 + AluY SINE Alu 1 294 -17 4055 122 30 38 chr13 5376120 5376483 -96496686 + MER39B LTR ERV1 296 653 0 2399 80 0 10 chr13 5376628 5376942 -96496227 - AluY SINE Alu 0 311 1 317 211 144 39 chr13 5377712 5377816 -96495353 - MIR3 SINE MIR -31 177 63 535 199 199 50 chr13 5378389 5378610 -96494559 - MIR SINE MIR -5 257 4 224 310 129 9 chr13 5379099 5379215 -96493954 - L2 LINE L2 -1364 1950 1821 2175 126 0 3 chr13 5379773 5380066 -96493103 - AluSx SINE Alu -20 292 1 2211 101 0 10 chr13 5380862 5381160 -96492009 - AluSx SINE Alu -17 295 1 2267 103 0 3 chr13 5381533 5381833 -96491336 - AluSx SINE Alu -13 299 1 267 208 28 14 chr13 5381874 5381946 -96491223 - MIR SINE MIR -109 153 81 297 313 46 23 chr13 5382033 5382164 -96491005 + L2 LINE L2 1459 1592 -1722 335 328 62 6 chr13 5382172 5382349 -96490820 + L2 LINE L2 1791 1977 -1337 2231 129 35 30 chr13 5382404 5382776 -96490393 + THE1C LTR MaLR 2 375 0 240 111 0 0 chr13 5383011 5383047 -96490122 + (A)n Simple_repeat Simple_repeat 1 36 0 2640 42 3 3 chr13 5384025 5384336 -96488833 - AluY SINE Alu 0 311 1 2275 60 3 3 chr13 5384966 5385271 -96487898 + AluY SINE Alu 1 305 0 1091 220 26 111 chr13 5385763 5386149 -96487020 + MLT1A1 LTR MaLR 13 365 0 1259 271 46 51 chr13 5386193 5386642 -96486527 - L2 LINE L2 -81 3232 2789 1696 154 3 74 chr13 5386642 5386966 -96486203 + AluJo SINE Alu 3 303 -9 1259 271 46 51 chr13 5386966 5387328 -96485841 - L2 LINE L2 -524 2789 2427 337 299 76 7 chr13 5389313 5389457 -96483712 + L2 LINE L2 3099 3252 -61 2114 88 53 3 chr13 5389902 5390185 -96482984 + AluY SINE Alu 1 297 -14 2087 138 16 0 chr13 5390305 5390610 -96482559 + AluSg SINE Alu 1 310 0 2248 97 7 10 chr13 5393554 5393863 -96479306 - AluSc SINE Alu 0 309 2 2325 101 0 0 chr13 5393864 5394161 -96479008 - AluSq SINE Alu -16 297 1 2166 130 3 0 chr13 5394169 5394469 -96478700 - AluSx SINE Alu -11 301 1 2105 130 10 0 chr13 5394477 5394777 -96478392 - AluSx SINE Alu -9 303 1 204 67 0 0 chr13 5394942 5394972 -96478197 + (CA)n Simple_repeat Simple_repeat 2 31 0 326 329 123 58 chr13 5395253 5395578 -96477591 - L2 LINE L2 -6 3266 2921 182 189 108 68 chr13 5395785 5395859 -96477310 - L2 LINE L2 -562 2752 2676 28 0 0 0 chr13 5396453 5396481 -96476688 + AT_rich Low_complexity Low_complexity 1 28 0 306 209 20 37 chr13 5396971 5397056 -96476113 - MIR SINE MIR -87 121 34 1648 142 53 114 chr13 5398318 5398749 -96474420 + LTR12 LTR ERV1 1 405 -309 424 211 100 11 chr13 5398751 5398841 -96474328 + LTR12 LTR ERV1 615 712 -2 191 358 117 8 chr13 5399264 5399384 -96473785 + MIR SINE MIR 16 148 -60 2574 99 14 0 chr13 5400707 5401051 -96472118 - L1PB1 LINE L1 -2 6149 5801 23 33 0 0 chr13 5401139 5401169 -96472000 + AT_rich Low_complexity Low_complexity 1 30 0 2448 57 0 7 chr13 5401710 5402007 -96471162 + AluY SINE Alu 1 295 -16 255 219 154 73 chr13 5402140 5402263 -96470906 - L2 LINE L2 -3 3269 3137 2464 226 86 42 chr13 5402289 5402984 -96470185 + MER21B LTR ERV1 1 726 -137 2449 88 0 3 chr13 5402988 5403294 -96469875 + AluSp SINE Alu 1 305 -8 228 182 23 0 chr13 5403658 5403702 -96469467 + L2 LINE L2 3268 3312 -1 22 35 0 0 chr13 5403894 5403923 -96469246 + AT_rich Low_complexity Low_complexity 1 29 0 2457 81 0 3 chr13 5403938 5404245 -96468924 + AluSc SINE Alu 1 306 -3 213 211 14 28 chr13 5405092 5405163 -96468006 + (TA)n Simple_repeat Simple_repeat 1 70 0 331 289 252 7 chr13 5405799 5405978 -96467191 - MIR SINE MIR -6 256 37 1818 285 160 28 chr13 5406132 5407063 -96466106 + L2 LINE L2 1671 2724 -590 1391 209 37 42 chr13 5407087 5407464 -96465705 - MLT1B LTR MaLR -11 379 5 558 286 161 43 chr13 5407474 5407937 -96465232 + L2 LINE L2 2743 3264 -49 181 242 0 0 chr13 5408295 5408328 -96464841 - L2 LINE L2 -16 3297 3265 258 264 14 114 chr13 5408789 5408929 -96464240 + MIR SINE MIR 119 244 -18 532 283 139 24 chr13 5408962 5409372 -96463797 - L1ME LINE L1 -368 5794 5338 307 255 100 32 chr13 5409372 5409538 -96463631 - MLT1H1 LTR MaLR -371 178 1 27 73 0 0 chr13 5409624 5409679 -96463490 + AT_rich Low_complexity Low_complexity 1 55 0 329 315 36 26 chr13 5409703 5410005 -96463164 - L1ME LINE L1 -946 5200 4896 828 217 79 21 chr13 5410302 5411587 -96461582 + L1ME2 LINE L1 4616 6109 -55 194 309 75 21 chr13 5411761 5411855 -96461314 + MIR SINE MIR 55 153 -109 235 293 54 34 chr13 5412192 5412397 -96460772 + HAL1 LINE L1 1550 1758 -749 2053 52 48 0 chr13 5412802 5413051 -96460118 - AluYa5 SINE Alu -49 262 2 311 0 0 25 chr13 5413056 5413096 -96460073 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 322 297 154 67 chr13 5413122 5413913 -96459256 + L1M4 LINE L1 2243 3102 -3044 207 0 0 0 chr13 5413991 5414014 -96459155 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2271 75 37 3 chr13 5414032 5414327 -96458842 - AluY SINE Alu -6 305 1 2170 79 58 0 chr13 5414550 5414841 -96458328 - AluY SINE Alu -3 308 1 1073 76 0 0 chr13 5414844 5414976 -96458193 - AluY SINE Alu -179 132 1 2052 180 49 14 chr13 5415594 5416039 -96457130 + LOR1b LTR ERV1 1 461 0 697 139 0 36 chr13 5416358 5416495 -96456674 - FLAM_C SINE Alu 0 143 12 2094 130 0 0 chr13 5416815 5417107 -96456062 + AluSg SINE Alu 1 292 -18 189 267 159 80 chr13 5417598 5417774 -96455395 - MIR3 SINE MIR -15 193 4 6984 133 91 93 chr13 5418053 5419754 -96453415 + pTR5 LTR ERV1 743 2438 0 227 73 49 0 chr13 5421871 5421912 -96451257 + (ATTAG)n Simple_repeat Simple_repeat 4 46 0 2243 86 0 17 chr13 5421963 5422265 -96450904 + AluY SINE Alu 1 297 -14 256 269 15 0 chr13 5422371 5422438 -96450731 - L2 LINE L2 -262 3010 2943 2240 104 7 3 chr13 5422515 5422814 -96450355 + AluSq SINE Alu 1 300 -13 819 206 47 51 chr13 5423484 5423737 -96449432 + MLT1A1 LTR MaLR 112 363 -2 610 264 139 88 chr13 5423810 5424307 -96448862 + L1ME3A LINE L1 5619 6140 -30 24 77 0 0 chr13 5424479 5424531 -96448638 + AT_rich Low_complexity Low_complexity 1 52 0 303 239 11 22 chr13 5425261 5425353 -96447816 + C-rich Low_complexity Low_complexity 6 96 0 212 189 0 0 chr13 5426538 5426575 -96446594 + A-rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 5426849 5426871 -96446298 + AT_rich Low_complexity Low_complexity 1 22 0 2187 101 11 0 chr13 5428260 5428547 -96444622 - AluSg SINE Alu -20 290 1 2279 80 3 0 chr13 5428994 5429282 -96443887 - AluY SINE Alu -4 307 19 368 266 85 53 chr13 5429292 5429611 -96443558 - L1ME4a LINE L1 -245 5876 5548 1460 77 15 5 chr13 5429625 5429820 -96443349 + AluY SINE Alu 1 197 -114 2686 150 65 7 chr13 5429921 5430567 -96442602 - L1MC/D LINE L1 -425 5817 5147 2349 90 3 3 chr13 5430665 5430977 -96442192 - AluSp SINE Alu -1 312 1 366 260 65 88 chr13 5431061 5431169 -96442000 - HAL1b LINE L1 -239 1109 1000 2277 84 3 13 chr13 5431169 5431478 -96441691 - AluY SINE Alu -5 306 1 366 260 65 88 chr13 5431478 5431753 -96441416 - HAL1b LINE L1 -348 1000 735 207 0 0 0 chr13 5432072 5432095 -96441074 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2186 74 0 18 chr13 5432095 5432380 -96440789 - AluSx SINE Alu -32 280 1 1724 130 3 34 chr13 5432823 5433115 -96440054 + AluSx SINE Alu 3 285 -27 492 62 0 0 chr13 5433115 5433179 -96439990 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2525 53 3 0 chr13 5433632 5433936 -96439233 + AluY SINE Alu 1 305 -6 281 326 112 23 chr13 5433957 5434900 -96438269 - L1M4 LINE L1 -2155 3991 2965 493 111 89 0 chr13 5434917 5435007 -96438162 + MER4A LTR ERV1 1 98 -566 1706 113 11 82 chr13 5435007 5435379 -96437790 + MER4A LTR ERV1 261 664 0 806 301 98 48 chr13 5435383 5435898 -96437271 - L1M4 LINE L1 -3200 2946 2385 2205 110 3 0 chr13 5435898 5436188 -96436981 + AluSq SINE Alu 2 292 -21 806 301 98 48 chr13 5436188 5436379 -96436790 - L1M4 LINE L1 -3761 2385 2205 25 51 0 0 chr13 5437933 5437972 -96435197 + AT_rich Low_complexity Low_complexity 1 39 0 4740 73 46 0 chr13 5438270 5438901 -96434268 - PABL_A LTR ERV1 0 660 1 602 186 0 8 chr13 5438914 5439032 -96434137 - L1P4 LINE L1 -402 5764 5648 * 7769 222 43 21 chr13 5439021 5440522 -96432647 - L1 LINE L1 -836 5546 4079 2340 89 0 13 chr13 5440522 5440825 -96432344 + AluY SINE Alu 1 299 -12 7769 222 43 21 chr13 5440825 5440981 -96432188 - L1 LINE L1 -2303 4079 3928 2153 106 0 3 chr13 5440981 5441289 -96431880 + AluSq SINE Alu 1 307 0 7769 222 43 21 chr13 5441289 5441931 -96431238 - L1 LINE L1 -2454 3928 3191 2063 178 70 5 chr13 5441931 5442329 -96430840 - MSTB LTR MaLR -2 424 1 7769 222 43 21 chr13 5442329 5442370 -96430799 - L1 LINE L1 -3191 3191 3152 2311 87 3 7 chr13 5442380 5442689 -96430480 - AluY SINE Alu -3 308 1 284 393 33 7 chr13 5442691 5442841 -96430328 - MIR SINE MIR -49 213 60 1941 154 106 23 chr13 5443150 5443545 -96429624 + MSTA LTR MaLR 1 428 0 2038 147 76 45 chr13 5443853 5444274 -96428895 + Tigger2a DNA MER2_type 1 434 0 1505 223 0 3 chr13 5444925 5445207 -96427962 + AluJo SINE Alu 1 281 -31 225 0 0 0 chr13 5445212 5445237 -96427932 + (T)n Simple_repeat Simple_repeat 1 25 0 643 197 74 18 chr13 5445258 5445462 -96427707 - L1 LINE L1 -3855 2527 2312 573 211 0 49 chr13 5445469 5445611 -96427558 - FAM SINE Alu -2 47 1 7294 215 57 31 chr13 5445624 5445882 -96427287 + L1M3 LINE L1 3001 3251 -2932 2213 101 3 0 chr13 5445882 5446170 -96426999 + AluY SINE Alu 13 301 -10 7294 215 57 31 chr13 5446170 5447517 -96425652 + L1M3 LINE L1 3251 4709 -1474 2341 107 0 0 chr13 5447517 5447817 -96425352 - AluSg SINE Alu -10 300 1 7294 215 57 31 chr13 5447817 5448725 -96424444 + L1M3 LINE L1 4709 5592 -591 485 131 12 0 chr13 5449495 5449579 -96423590 + MER61E LTR ERV1 1 85 -484 1019 204 139 15 chr13 5449806 5450144 -96423025 + LTR25 LTR ERV1 415 794 0 399 324 87 18 chr13 5450189 5450408 -96422761 + MIR SINE MIR 13 246 -16 432 0 0 0 chr13 5450698 5450746 -96422423 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 318 204 21 43 chr13 5451869 5451962 -96421207 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 5452107 5452181 -96420988 + AT_rich Low_complexity Low_complexity 1 74 0 549 311 76 62 chr13 5452217 5452572 -96420597 + L1M4 LINE L1 2364 2730 -3416 1958 138 0 10 chr13 5452572 5452869 -96420300 - AluSx SINE Alu -18 294 1 549 311 76 62 chr13 5452869 5453014 -96420155 + L1M4 LINE L1 2730 2871 -3275 843 256 78 20 chr13 5453073 5453561 -96419608 + L1M4 LINE L1 2988 3503 -2643 347 133 0 0 chr13 5453809 5453869 -96419300 + Alu SINE Alu 243 302 0 2492 62 0 7 chr13 5453913 5454220 -96418949 - AluY SINE Alu -6 305 1 2536 77 3 0 chr13 5454447 5454757 -96418412 - AluSx SINE Alu -1 311 1 2373 86 0 0 chr13 5455725 5456026 -96417143 + AluY SINE Alu 1 301 -10 2110 111 17 0 chr13 5456038 5456335 -96416834 + AluSx SINE Alu 11 312 0 23 0 0 0 chr13 5456366 5456389 -96416780 + AT_rich Low_complexity Low_complexity 1 23 0 984 115 0 7 chr13 5456433 5456581 -96416588 - AluY SINE Alu -4 307 161 1827 201 63 53 chr13 5456581 5457164 -96416005 + pTR5 LTR ERV1 744 1332 -1106 4049 150 65 5 chr13 5457208 5457853 -96415316 + LTR12 LTR ERV1 5 688 0 1063 138 25 0 chr13 5457854 5458014 -96415155 - AluY SINE Alu -147 164 1 1537 116 30 67 chr13 5458210 5458478 -96414691 - AluY SINE Alu -13 298 41 2241 79 3 14 chr13 5460053 5460379 -96412790 - AluSq SINE Alu 0 323 1 346 274 56 111 chr13 5461121 5461355 -96411814 + MLT1I LTR MaLR 68 288 -121 3491 111 108 89 chr13 5462013 5462776 -96410393 - LTR1 LTR ERV1 -8 777 1 382 281 50 91 chr13 5463025 5463163 -96410006 - MIR SINE MIR -25 237 112 2082 94 28 3 chr13 5463163 5463451 -96409718 + AluSp SINE Alu 3 297 -16 382 281 50 91 chr13 5463451 5463554 -96409615 - MIR SINE MIR -150 112 6 582 184 21 35 chr13 5464304 5464445 -96408724 - L1MB8 LINE L1 -1 6879 6741 2691 214 84 8 chr13 5464448 5465623 -96407546 - L1MB8 LINE L1 -238 6648 5328 3920 159 16 15 chr13 5465641 5466325 -96406844 - L1MA6 LINE L1 -1 6299 5615 2927 86 11 11 chr13 5466327 5466700 -96406469 - THE1C LTR MaLR -2 373 1 329 150 0 0 chr13 5466703 5466763 -96406406 - L1P LINE L1 -728 5428 5369 461 219 42 8 chr13 5466767 5466886 -96406283 - L1MB8 LINE L1 -3552 3296 3174 2851 230 34 77 chr13 5466896 5467193 -96405976 - L1M4 LINE L1 -2093 4864 4556 734 101 10 0 chr13 5467193 5467292 -96405877 - HY3 scRNA scRNA -1 100 1 2851 230 34 77 chr13 5467292 5468194 -96404975 - L1M4 LINE L1 -2401 4556 3716 356 0 23 0 chr13 5468345 5468389 -96404780 + (TG)n Simple_repeat Simple_repeat 2 46 0 4930 240 59 43 chr13 5468477 5469925 -96403244 - L1M4 LINE L1 -5304 1555 84 5628 147 24 10 chr13 5469943 5470019 -96403150 + L1PB3 LINE L1 4755 4828 -1326 2055 87 42 3 chr13 5470019 5470307 -96402862 + AluY SINE Alu 1 299 -12 5628 147 24 10 chr13 5470307 5470787 -96402382 + L1PB3 LINE L1 4828 5300 -854 2471 53 0 3 chr13 5470787 5471087 -96402082 + AluY SINE Alu 1 299 -12 5628 147 24 10 chr13 5471087 5471878 -96401291 + L1PB3 LINE L1 5300 6115 -39 1074 40 0 0 chr13 5471903 5472029 -96401140 + AluY SINE Alu 177 302 -9 284 276 13 26 chr13 5472095 5472171 -96400998 - L1M4 LINE L1 -6770 89 15 836 150 0 0 chr13 5472174 5472307 -96400862 - AluSg/x SINE Alu -3 309 177 336 176 96 128 chr13 5472316 5472503 -96400666 + Charlie7 DNA MER1_type 2426 2606 -6 1585 173 114 82 chr13 5473369 5473832 -96399337 + LTR12 LTR ERV1 1 478 -236 415 280 147 63 chr13 5474792 5475235 -96397934 - L1MB8 LINE L1 -5899 950 471 2151 57 0 47 chr13 5476938 5477238 -96395931 + AluY SINE Alu 1 286 -25 1418 117 5 0 chr13 5477240 5477482 -96395687 + AluSg/x SINE Alu 85 327 0 191 168 42 0 chr13 5479026 5479080 -96394089 - MIR SINE MIR -62 146 88 1222 143 38 5 chr13 5479097 5479307 -96393862 - MSTB1 LTR MaLR -24 408 192 224 257 0 57 chr13 5479531 5479636 -96393533 + CT-rich Low_complexity Low_complexity 6 104 0 2213 104 0 7 chr13 5480133 5480432 -96392737 - AluSx SINE Alu -15 297 1 1538 239 43 5 chr13 5480434 5480831 -96392338 - L1M4 LINE L1 -1780 4366 3955 207 0 0 0 chr13 5480831 5480854 -96392315 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1903 82 0 0 chr13 5480866 5481099 -96392070 - AluSc SINE Alu -76 233 1 999 225 10 0 chr13 5481099 5481299 -96391870 - L1MCa LINE L1 -6206 220 19 7115 91 27 21 chr13 5481385 5482337 -96390832 - L1MA2 LINE L1 -8 6296 5332 2049 141 0 16 chr13 5482337 5482642 -96390527 - AluSx SINE Alu -12 300 1 7115 91 27 21 chr13 5482642 5482828 -96390341 - L1MA2 LINE L1 -972 5332 5148 365 309 73 61 chr13 5482831 5483077 -96390092 + L2 LINE L2 3037 3285 -28 546 179 83 36 chr13 5483434 5483602 -96389567 + MER104 DNA MER2_type 2 177 -3 36 0 0 0 chr13 5483642 5483678 -96389491 + AT_rich Low_complexity Low_complexity 1 36 0 2223 77 4 0 chr13 5484005 5484278 -96388891 + AluSc SINE Alu 1 274 -35 219 36 0 0 chr13 5484279 5484307 -96388862 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 408 40 0 0 chr13 5484306 5484356 -96388813 + (CA)n Simple_repeat Simple_repeat 1 50 0 462 269 101 71 chr13 5484392 5484795 -96388374 - MLT1K LTR MaLR 0 588 146 206 353 104 6 chr13 5485860 5486033 -96387136 - MIR SINE MIR -53 209 20 2286 159 3 9 chr13 5486179 5486518 -96386651 - MER1B DNA MER1_type 0 337 1 24 103 0 0 chr13 5486969 5487056 -96386113 + AT_rich Low_complexity Low_complexity 1 87 0 655 298 41 17 chr13 5488516 5488808 -96384361 + HAL1 LINE L1 1486 1784 -723 1700 193 18 2 chr13 5490995 5491465 -96381704 - L1 LINE L1 -3650 3198 2719 3783 146 26 38 chr13 5491465 5492128 -96381041 + L1MA6 LINE L1 5632 6286 -14 2289 103 0 23 chr13 5492174 5492484 -96380685 - AluSx SINE Alu -9 303 1 205 235 20 0 chr13 5493725 5493776 -96379393 + MIR3 SINE MIR 149 200 -8 1339 171 0 9 chr13 5494475 5494697 -96378472 - L1PA15 LINE L1 -2 6163 5944 22 0 0 0 chr13 5494804 5494826 -96378343 + AT_rich Low_complexity Low_complexity 1 22 0 182 79 0 53 chr13 5495357 5495395 -96377774 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 5495781 5495803 -96377366 + AT_rich Low_complexity Low_complexity 1 22 0 343 280 87 40 chr13 5497699 5497849 -96375320 + MIR SINE MIR 80 236 -26 2340 94 3 0 chr13 5498273 5498571 -96374598 - AluSg SINE Alu -11 299 1 21 0 0 0 chr13 5498891 5498912 -96374257 + AT_rich Low_complexity Low_complexity 1 21 0 549 247 52 0 chr13 5499321 5499475 -96373694 + LTR16A1 LTR ERVL 296 457 0 1248 137 197 9 chr13 5499476 5499790 -96373379 - MER65A LTR ERV1 0 445 1 1919 121 0 0 chr13 5499839 5500095 -96373074 - AluSc SINE Alu -53 256 1 293 293 30 86 chr13 5500607 5500805 -96372364 - ERVL LTR ERVL -364 5400 5214 1182 328 96 17 chr13 5501290 5502114 -96371055 - ERVL LTR ERVL -1112 4652 3764 960 275 95 34 chr13 5502309 5502918 -96370251 - ERVL LTR ERVL -2190 3464 2782 1852 134 39 20 chr13 5502918 5503224 -96369945 - AluSx SINE Alu 0 312 1 960 275 95 34 chr13 5503224 5503343 -96369826 - ERVL LTR ERVL -2872 2782 2672 534 276 138 16 chr13 5503424 5503670 -96369499 - ERVL LTR ERVL -3102 2552 2277 269 263 20 50 chr13 5503698 5503797 -96369372 - ERVL LTR ERVL -3526 2238 2143 1956 116 4 0 chr13 5503814 5504081 -96369088 - AluSx SINE Alu -44 268 1 23 33 0 0 chr13 5504643 5504673 -96368496 + AT_rich Low_complexity Low_complexity 1 30 0 2346 49 35 0 chr13 5506509 5506797 -96366372 + AluY SINE Alu 1 298 -13 341 43 21 0 chr13 5506960 5507007 -96366162 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 2214 85 0 7 chr13 5507020 5507301 -96365868 - AluSq SINE Alu -34 279 1 1095 298 155 40 chr13 5507451 5508718 -96364451 - L2 LINE L2 -5 3308 1892 539 349 94 14 chr13 5508936 5509351 -96363818 - MLT1K LTR MaLR 0 588 141 316 312 98 39 chr13 5510681 5511271 -96361898 - L1ME4a LINE L1 -239 5882 5258 225 233 0 0 chr13 5511803 5511846 -96361323 - L2 LINE L2 0 3272 3230 463 259 79 44 chr13 5512208 5512436 -96360733 + L1MEd LINE L1 973 1208 -4911 2289 104 0 3 chr13 5513171 5513470 -96359699 + AluSg SINE Alu 1 298 -12 2126 70 0 0 chr13 5513470 5513729 -96359440 + AluY SINE Alu 38 296 -15 2156 98 3 3 chr13 5514747 5515056 -96358113 + AluSx SINE Alu 1 309 0 855 305 88 19 chr13 5515088 5515761 -96357408 - L2 LINE L2 -5 3308 2590 979 195 92 21 chr13 5515897 5516324 -96356845 + MLT1D LTR MaLR 3 500 -5 878 318 151 14 chr13 5516585 5517159 -96356010 - L2 LINE L2 -223 3049 2386 2375 97 0 0 chr13 5517557 5517865 -96355304 - AluY SINE Alu -3 308 1 26 50 0 0 chr13 5518136 5518176 -96354993 + AT_rich Low_complexity Low_complexity 1 40 0 729 97 0 0 chr13 5519187 5519403 -96353766 - AluSg/x SINE Alu 0 423 208 21 89 0 0 chr13 5519680 5519736 -96353433 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 5520751 5520775 -96352394 + AT_rich Low_complexity Low_complexity 1 24 0 2578 157 34 16 chr13 5520776 5521278 -96351891 - L1MB1 LINE L1 -13 6155 5645 5192 170 20 3 chr13 5521278 5522580 -96350589 + L1MB1 LINE L1 4344 5667 -501 822 139 44 0 chr13 5524273 5524410 -96348759 + Tigger5 DNA MER2_type 2115 2257 -66 231 169 0 99 chr13 5524449 5524520 -96348649 + MLT1E1 LTR MaLR 591 654 0 2397 81 0 0 chr13 5525016 5525314 -96347855 + AluY SINE Alu 1 298 -13 296 309 68 60 chr13 5526330 5526465 -96346704 + L2 LINE L2 2878 3010 -303 2423 130 47 5 chr13 5526465 5526873 -96346296 + MSTA LTR MaLR 4 428 0 296 309 68 60 chr13 5526873 5527002 -96346167 + L2 LINE L2 3010 3144 -169 1895 142 3 26 chr13 5527803 5528105 -96345064 + AluSx SINE Alu 5 299 -13 2428 155 67 0 chr13 5528588 5529020 -96344149 + LOR1b LTR ERV1 1 461 0 186 171 0 0 chr13 5531587 5531628 -96341541 + (ATG)n Simple_repeat Simple_repeat 2 42 0 337 257 50 0 chr13 5532039 5532140 -96341029 - U6 snRNA snRNA 0 107 2 207 383 43 11 chr13 5532348 5532442 -96340727 - MIR SINE MIR -137 125 29 301 344 38 6 chr13 5532511 5532671 -96340498 + L1M4 LINE L1 3983 4147 -1999 23 54 0 0 chr13 5533144 5533181 -96339988 + AT_rich Low_complexity Low_complexity 1 37 0 1609 110 17 8 chr13 5533532 5533802 -96339367 + AluSp SINE Alu 46 317 0 191 191 119 0 chr13 5534761 5534803 -96338366 - L2 LINE L2 -9 3263 3217 246 296 14 0 chr13 5534834 5534905 -96338264 - L2 LINE L2 0 3272 3201 193 344 56 16 chr13 5535158 5535283 -96337886 - L2 LINE L2 -483 2831 2702 319 169 108 0 chr13 5535366 5535431 -96337738 + MER57A LTR ERV1 1 72 -331 572 270 150 10 chr13 5535480 5535837 -96337332 - L1M4 LINE L1 -841 5305 4886 2005 145 0 7 chr13 5535863 5536166 -96337003 + AluSx SINE Alu 1 301 -11 2435 76 3 0 chr13 5536316 5536618 -96336551 + AluY SINE Alu 1 303 -8 2329 82 0 14 chr13 5537001 5537294 -96335875 + AluSg SINE Alu 1 289 -21 188 204 204 0 chr13 5537745 5537799 -96335370 - L2 LINE L2 -8 3264 3200 186 43 0 0 chr13 5537978 5538001 -96335168 + (CA)n Simple_repeat Simple_repeat 1 23 0 743 257 18 0 chr13 5538092 5538263 -96334906 + MER5B DNA MER1_type 5 178 0 337 261 34 0 chr13 5538280 5538368 -96334801 + MER5A DNA MER1_type 14 104 -85 636 227 0 65 chr13 5538467 5538621 -96334548 + MLT1D LTR MaLR 3 146 -359 1378 232 171 5 chr13 5538624 5539097 -96334072 - L1MC4 LINE L1 -666 7376 6983 258 32 0 0 chr13 5539097 5539128 -96334041 + (CA)n Simple_repeat Simple_repeat 1 31 0 1378 232 171 5 chr13 5539128 5539245 -96333924 - L1MC4 LINE L1 -1059 6983 6540 957 218 198 43 chr13 5539348 5539796 -96333373 + L1ME1 LINE L1 5523 6041 -125 1440 183 63 0 chr13 5539796 5540064 -96333105 - AluJb SINE Alu -27 285 1 957 218 198 43 chr13 5540064 5540158 -96333011 + L1ME1 LINE L1 6041 6119 -47 21 0 0 0 chr13 5540333 5540354 -96332815 + AT_rich Low_complexity Low_complexity 1 21 0 9192 172 12 7 chr13 5540424 5540840 -96332329 - L1PA15 LINE L1 -9 6156 5744 2107 108 3 45 chr13 5540840 5541154 -96332015 - AluSx SINE Alu -11 301 1 9192 172 12 7 chr13 5541154 5543301 -96329868 - L1PA15 LINE L1 -421 5744 3606 2119 124 10 0 chr13 5543807 5544105 -96329064 + AluSx SINE Alu 1 301 -11 204 274 88 62 chr13 5544459 5544510 -96328659 - L2 LINE L2 -939 2375 2327 2077 80 0 0 chr13 5544510 5544760 -96328409 + AluY SINE Alu 40 289 -22 204 274 88 62 chr13 5544760 5544821 -96328348 - L2 LINE L2 -987 2327 2260 2681 171 24 4 chr13 5544857 5545355 -96327814 + L1MB3 LINE L1 5456 5963 -208 249 189 122 0 chr13 5545363 5545437 -96327732 + L1MA5 LINE L1 6209 6291 -9 1035 167 14 14 chr13 5545444 5545675 -96327494 + L1MB3 LINE L1 5945 6176 -7 462 315 64 8 chr13 5545748 5545999 -96327170 - L2 LINE L2 -1159 2155 1891 224 297 171 9 chr13 5546030 5546141 -96327028 + L2 LINE L2 3184 3312 -1 499 234 2 28 chr13 5546164 5546305 -96326864 + L1ME1 LINE L1 6029 6164 0 2295 86 33 0 chr13 5547056 5547359 -96325810 + AluSp SINE Alu 1 313 0 2395 56 0 3 chr13 5548365 5548677 -96324492 + AluY SINE Alu 1 311 0 2216 255 19 36 chr13 5549952 5550649 -96322520 + L1MEc LINE L1 58 742 -5654 3054 245 56 49 chr13 5550660 5552841 -96320328 + L1MEc LINE L1 953 3123 -3092 2464 72 13 0 chr13 5552841 5553147 -96320022 + AluY SINE Alu 1 310 -1 3054 245 56 49 chr13 5553147 5553216 -96319953 + L1MEc LINE L1 3123 3190 -3025 3103 184 56 6 chr13 5553324 5553971 -96319198 + L1MEc LINE L1 3344 4022 -2193 783 243 41 4 chr13 5553967 5554235 -96318934 + L1M4 LINE L1 3099 3376 -2770 * 569 172 26 9 chr13 5554775 5554891 -96318278 + L1MB4 LINE L1 6051 6168 -12 25 51 0 0 chr13 5554899 5554938 -96318231 + AT_rich Low_complexity Low_complexity 1 39 0 273 214 121 14 chr13 5555227 5555367 -96317802 - MLT1L LTR MaLR -32 583 429 266 230 0 87 chr13 5555444 5555571 -96317598 - MLT1J LTR MaLR -326 289 110 273 280 76 49 chr13 5555733 5555902 -96317267 + MIR SINE MIR 17 191 -71 214 147 0 0 chr13 5558175 5558209 -96314960 + (CAG)n Simple_repeat Simple_repeat 2 35 0 1800 167 3 32 chr13 5559765 5560076 -96313093 + AluJo SINE Alu 1 302 -10 917 122 0 0 chr13 5560094 5560217 -96312952 + FLAM_C SINE Alu 1 123 -10 25 51 0 0 chr13 5560290 5560329 -96312840 + AT_rich Low_complexity Low_complexity 1 39 0 1914 103 24 0 chr13 5560521 5560812 -96312357 + AluY SINE Alu 1 298 -13 2363 81 3 3 chr13 5560812 5561120 -96312049 + AluY SINE Alu 1 308 -3 377 246 70 21 chr13 5561148 5561290 -96311879 + MLT1J2 LTR MaLR 73 221 -229 1218 114 18 44 chr13 5561476 5561703 -96311466 - THE1C LTR MaLR 0 375 155 1190 165 64 23 chr13 5563546 5563764 -96309405 + AluJo SINE Alu 1 227 -85 205 122 73 24 chr13 5564312 5564353 -96308816 - L2 LINE L2 -2 3311 3269 2488 74 0 0 chr13 5564455 5564766 -96308403 + AluY SINE Alu 1 311 0 408 351 29 23 chr13 5564834 5565008 -96308161 - MIR3 SINE MIR -28 180 6 793 225 19 0 chr13 5565147 5565307 -96307862 + FRAM SINE Alu 1 163 -3 2384 169 29 2 chr13 5565702 5566117 -96307052 + MSTB LTR MaLR 1 426 0 6670 183 137 1 chr13 5566117 5567566 -96305603 + MSTB-int LTR MaLR 1 1645 -6 1099 180 0 0 chr13 5567571 5567760 -96305409 + MSTB LTR MaLR 1 189 -237 385 283 35 12 chr13 5567784 5567957 -96305212 + L1PB3 LINE L1 3 179 -6684 1670 149 11 13 chr13 5567972 5568431 -96304738 + L1PB3 LINE L1 1403 1860 -5003 * 27703 62 9 5 chr13 5568429 5569316 -96303853 - L1PA6 LINE L1 -5 6149 5267 1019 119 6 6 chr13 5569316 5569476 -96303693 - L1PA6 LINE L1 -10 6144 5985 27703 62 9 5 chr13 5569476 5573179 -96299990 - L1PA6 LINE L1 -887 5267 1552 15589 66 7 4 chr13 5573279 5575464 -96297705 - L1P LINE L1 -2530 3616 1425 11626 211 39 25 chr13 5575478 5579497 -96293672 + L1PB3 LINE L1 1888 6050 -820 2189 123 0 3 chr13 5579497 5579798 -96293371 + AluSc SINE Alu 1 300 -9 11626 211 39 25 chr13 5579798 5580256 -96292913 + L1PB3 LINE L1 6050 6500 -370 1855 74 18 0 chr13 5580256 5580485 -96292684 + AluSx SINE Alu 63 295 -17 2342 111 24 26 chr13 5580528 5580907 -96292262 + L1PB3 LINE L1 6493 6870 0 1235 164 36 5 chr13 5580937 5581157 -96292012 + MSTB LTR MaLR 200 426 0 2015 284 73 40 chr13 5583599 5584066 -96289103 - L1MC4a LINE L1 -748 5398 4948 2518 52 3 0 chr13 5584066 5584373 -96288796 - AluY SINE Alu -3 308 1 2015 284 73 40 chr13 5584373 5585140 -96288029 - L1MC4a LINE L1 -1198 4948 4208 2122 118 35 0 chr13 5585140 5585428 -96287741 + AluSx SINE Alu 1 298 -14 2015 284 73 40 chr13 5585428 5585516 -96287653 - L1MC4a LINE L1 -1938 4208 4124 1406 124 55 0 chr13 5585516 5585734 -96287435 + MER30 DNA MER1_type 1 230 0 2015 284 73 40 chr13 5585734 5587384 -96285785 - L1MC4a LINE L1 -2022 4124 3026 2140 139 0 3 chr13 5587384 5587685 -96285484 - AluSx SINE Alu -12 300 1 2015 284 73 40 chr13 5587685 5588048 -96285121 - L1MC4a LINE L1 -3120 3026 2676 385 332 55 6 chr13 5588148 5588418 -96284751 - L1MC4a LINE L1 -3581 2565 2278 2297 82 0 60 chr13 5588591 5588922 -96284247 - AluY SINE Alu 0 311 1 207 0 0 0 chr13 5589321 5589344 -96283825 + (TA)n Simple_repeat Simple_repeat 2 24 0 2114 112 42 0 chr13 5589433 5589719 -96283450 + AluSx SINE Alu 1 298 -14 213 39 0 0 chr13 5589858 5589884 -96283285 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2280 98 3 16 chr13 5590619 5590934 -96282235 - AluSx SINE Alu 0 312 2 226 322 0 0 chr13 5591156 5591215 -96281954 + L2 LINE L2 3250 3308 -5 22 0 0 0 chr13 5591675 5591697 -96281472 + AT_rich Low_complexity Low_complexity 1 22 0 2501 63 0 0 chr13 5591898 5592198 -96280971 - AluY SINE Alu -11 300 1 1273 105 0 0 chr13 5592313 5592484 -96280685 + AluSp SINE Alu 133 303 -10 2276 113 0 0 chr13 5593748 5594048 -96279121 - AluSx SINE Alu -12 300 1 354 332 124 0 chr13 5594623 5594825 -96278344 + MIR SINE MIR 2 228 -34 898 183 0 56 chr13 5595026 5595074 -96278095 - MER5A DNA MER1_type -19 170 121 1888 142 0 17 chr13 5595074 5595404 -96277765 + AluJb SINE Alu 1 325 0 898 183 0 56 chr13 5595404 5595533 -96277636 - MER5A DNA MER1_type -68 121 1 2045 170 18 0 chr13 5595600 5595930 -96277239 - MER1B DNA MER1_type -1 336 1 2810 100 47 7 chr13 5596346 5596776 -96276393 - L1PA13 LINE L1 0 6163 5717 471 170 0 80 chr13 5596776 5596876 -96276293 - MER20 DNA MER1_type -11 208 117 6730 101 16 0 chr13 5596891 5597917 -96275252 - L1P LINE L1 -3251 2895 1854 12541 106 12 12 chr13 5598018 5601069 -96272100 - L1P3 LINE L1 -3390 3071 1 273 353 59 0 chr13 5601093 5601178 -96271991 + MIR SINE MIR 34 123 -85 1845 136 14 32 chr13 5601504 5601850 -96271319 - Tigger7 DNA MER2_type 0 2587 2248 537 167 17 50 chr13 5601858 5601978 -96271191 - Tigger7 DNA MER2_type -589 116 1 1142 233 185 75 chr13 5602038 5602621 -96270548 + MLT1E2 LTR MaLR 4 622 -4 207 0 0 0 chr13 5602737 5602760 -96270409 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2135 112 3 0 chr13 5602762 5603049 -96270120 - AluSc SINE Alu -21 288 1 369 271 31 16 chr13 5604234 5604363 -96268806 - MLT1L LTR MaLR -17 598 468 951 302 211 34 chr13 5604741 5605665 -96267504 - L2 LINE L2 -480 2834 1747 1785 163 101 31 chr13 5606815 5607108 -96266061 + MER65C LTR ERV1 1 335 -126 2243 119 0 0 chr13 5607108 5607402 -96265767 - AluSx SINE Alu -14 298 5 1785 163 101 31 chr13 5607402 5607532 -96265637 + MER65C LTR ERV1 335 454 -7 2182 106 3 7 chr13 5608544 5608845 -96264324 + AluSx SINE Alu 1 300 -12 585 255 130 11 chr13 5609658 5609842 -96263327 + MIR SINE MIR 5 210 -52 1515 168 22 16 chr13 5611402 5611724 -96261445 - L1MB3 LINE L1 -1 6182 5859 25 31 0 0 chr13 5611991 5612023 -96261146 + AT_rich Low_complexity Low_complexity 1 32 0 278 336 54 0 chr13 5612043 5612192 -96260977 + MIR SINE MIR 56 212 -50 3585 107 2 4 chr13 5612263 5612775 -96260394 - MER9 LTR ERVK 0 511 1 2047 88 4 0 chr13 5612776 5613037 -96260132 - AluSc SINE Alu -47 262 1 36 0 0 0 chr13 5613364 5613400 -96259769 + AT_rich Low_complexity Low_complexity 1 36 0 469 179 83 36 chr13 5613440 5613608 -96259561 - MER104 DNA MER2_type -3 177 2 339 309 77 65 chr13 5613965 5614211 -96258958 - L2 LINE L2 -28 3285 3037 6565 91 27 21 chr13 5614214 5614400 -96258769 + L1MA2 LINE L1 5148 5332 -972 2071 141 0 16 chr13 5614400 5614705 -96258464 + AluSx SINE Alu 1 300 -12 6565 91 27 21 chr13 5614705 5615657 -96257512 + L1MA2 LINE L1 5332 6296 -8 913 225 10 0 chr13 5615743 5615943 -96257226 + L1MCa LINE L1 19 220 -6206 1894 82 0 0 chr13 5615943 5616176 -96256993 + AluSc SINE Alu 1 233 -76 207 0 0 0 chr13 5616188 5616211 -96256958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1357 249 38 0 chr13 5616211 5616608 -96256561 + L1M4 LINE L1 3955 4366 -1780 2218 103 0 7 chr13 5616610 5616910 -96256259 + AluSx SINE Alu 1 298 -14 226 257 0 57 chr13 5617407 5617512 -96255657 + GA-rich Low_complexity Low_complexity 6 104 0 1129 143 38 5 chr13 5617736 5617946 -96255223 + MSTB1 LTR MaLR 192 408 -24 196 222 74 0 chr13 5617963 5618017 -96255152 + MIR SINE MIR 88 145 -117 1415 117 5 0 chr13 5619561 5619803 -96253366 - AluSg/x SINE Alu 0 327 85 2116 57 0 47 chr13 5619805 5620105 -96253064 - AluY SINE Alu -25 286 1 1091 123 0 0 chr13 5620463 5620609 -96252560 + AluSg/x SINE Alu 134 279 -31 24 0 0 0 chr13 5620935 5620959 -96252210 + AT_rich Low_complexity Low_complexity 1 24 0 410 311 129 13 chr13 5621238 5621463 -96251706 - MIR SINE MIR -6 256 6 189 0 0 0 chr13 5621662 5621683 -96251486 + (TA)n Simple_repeat Simple_repeat 1 21 0 2450 73 3 0 chr13 5621683 5621986 -96251183 - AluY SINE Alu -7 304 1 203 356 17 0 chr13 5622141 5622200 -96250969 - L2 LINE L2 -86 3186 3127 450 0 0 0 chr13 5623060 5623110 -96250059 + (TA)n Simple_repeat Simple_repeat 2 51 0 2333 78 3 0 chr13 5623110 5623404 -96249765 - AluY SINE Alu -16 295 1 203 356 17 0 chr13 5623559 5623618 -96249551 - L2 LINE L2 -86 3186 3127 207 0 0 0 chr13 5624462 5624485 -96248684 + (A)n Simple_repeat Simple_repeat 1 23 0 2440 52 0 3 chr13 5624486 5624776 -96248393 + AluY SINE Alu 1 289 -22 309 279 62 50 chr13 5624858 5625037 -96248132 + L1MDa LINE L1 1170 1350 -5190 495 201 117 13 chr13 5625040 5625194 -96247975 + L1MD3 LINE L1 6731 6900 -1095 2348 96 0 16 chr13 5625257 5625569 -96247600 + AluSx SINE Alu 1 307 -5 1078 194 91 142 chr13 5625657 5626126 -96247043 - Charlie2 DNA MER1_type -155 2707 2304 1102 144 0 0 chr13 5626126 5626314 -96246855 + L1MA5 LINE L1 6111 6298 -2 1078 194 91 142 chr13 5626314 5626744 -96246425 - Charlie2 DNA MER1_type -558 2304 1854 446 247 55 7 chr13 5626748 5626894 -96246275 - Charlie2 DNA MER1_type -2541 321 169 529 287 72 21 chr13 5626938 5627273 -96245896 + L1MEc LINE L1 44 395 -6001 1026 227 74 60 chr13 5627356 5627831 -96245338 - L1MC/D LINE L1 -743 5797 5608 311 221 0 117 chr13 5627955 5628118 -96245051 - L1MC/D LINE L1 -1116 5424 5281 1769 124 4 0 chr13 5628276 5628432 -96244737 - AluSx SINE Alu -32 280 121 243 0 0 0 chr13 5628432 5628459 -96244710 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1769 124 4 0 chr13 5628459 5628559 -96244610 - AluSx SINE Alu -191 121 23 594 311 125 22 chr13 5628668 5629501 -96243668 - L1MC/D LINE L1 -1437 5103 4184 1081 197 112 16 chr13 5629545 5629676 -96243493 - AluJo SINE Alu -39 273 156 189 0 0 0 chr13 5629676 5629697 -96243472 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1081 197 112 16 chr13 5629697 5629814 -96243355 - AluJo SINE Alu -156 156 1 266 306 32 35 chr13 5629987 5630301 -96242868 - L1MC/D LINE L1 -2515 4025 3713 21 0 0 0 chr13 5630788 5630809 -96242360 + AT_rich Low_complexity Low_complexity 1 21 0 729 316 128 46 chr13 5632012 5632348 -96240821 - L1M4 LINE L1 -1120 5026 4719 1996 159 3 0 chr13 5632348 5632638 -96240531 - AluSx SINE Alu -19 293 3 729 316 128 46 chr13 5632638 5632934 -96240235 - L1M4 LINE L1 -1427 4719 4342 186 43 0 0 chr13 5633025 5633048 -96240121 + (GA)n Simple_repeat Simple_repeat 1 23 0 639 144 0 136 chr13 5633050 5633182 -96239987 - FLAM_A SINE Alu -19 114 1 282 280 81 57 chr13 5633254 5633465 -96239704 - L1M4 LINE L1 -1956 4190 3975 2580 61 0 0 chr13 5633848 5634159 -96239010 - AluY SINE Alu 0 311 1 325 276 24 16 chr13 5634348 5634471 -96238698 - L1MC/D LINE L1 -3965 2575 2452 432 287 108 25 chr13 5634810 5635196 -96237973 - L1MEc LINE L1 -809 1767 1270 742 271 70 11 chr13 5635236 5635509 -96237660 - LTR68 LTR ERV1 -451 289 1 1238 180 54 0 chr13 5636283 5636522 -96236647 + L1PB4 LINE L1 5893 6144 -12 2272 126 0 0 chr13 5636929 5637238 -96235931 - AluSx SINE Alu -3 309 1 2890 68 20 5 chr13 5637500 5637898 -96235271 + MLT2A1 LTR ERVL 1 404 -40 243 200 0 15 chr13 5637899 5637964 -96235205 + (TA)n Simple_repeat Simple_repeat 1 64 0 341 47 0 0 chr13 5638014 5638057 -96235112 - MLT2A2 LTR ERVL 0 453 411 234 0 0 0 chr13 5638156 5638182 -96234987 + (TA)n Simple_repeat Simple_repeat 1 26 0 355 69 0 52 chr13 5638234 5638292 -96234877 + MLT2A1 LTR ERVL 399 453 0 353 74 19 0 chr13 5638292 5638346 -96234823 + HERVL-A1 LTR ERVL 1 55 -5599 * 22504 57 11 7 chr13 5638338 5640697 -96232472 + HERVL-A1 LTR ERVL 2677 5052 -602 2115 93 39 0 chr13 5640697 5640977 -96232192 + AluY SINE Alu 1 291 -20 22504 57 11 7 chr13 5640977 5641583 -96231586 + HERVL-A1 LTR ERVL 5052 5654 0 2831 65 48 83 chr13 5641583 5642043 -96231126 + MLT2A1 LTR ERVL 1 444 0 220 222 49 0 chr13 5642201 5642282 -96230887 + (TA)n Simple_repeat Simple_repeat 2 86 0 2193 112 0 7 chr13 5642789 5643093 -96230076 + AluSg SINE Alu 1 302 -8 572 222 8 0 chr13 5643943 5644060 -96229109 + FAM SINE Alu 31 148 -37 180 0 0 0 chr13 5644369 5644389 -96228780 + (T)n Simple_repeat Simple_repeat 1 20 0 2366 195 28 28 chr13 5645045 5645589 -96227580 - MER44D DNA MER2_type 0 605 7 2019 164 82 9 chr13 5645985 5646412 -96226757 - LTR32 LTR ERVL -5 466 9 237 274 62 60 chr13 5646585 5646747 -96226422 + MIR3 SINE MIR 15 180 -82 276 219 167 0 chr13 5648939 5649035 -96224134 - MIR SINE MIR -70 192 81 279 277 71 36 chr13 5649111 5649223 -96223946 - MIR SINE MIR -63 145 68 2375 95 0 0 chr13 5650445 5650751 -96222418 + AluY SINE Alu 3 308 -3 726 283 40 4 chr13 5651671 5651947 -96221222 + MER46C DNA MER2_type 1 286 -52 21 0 0 0 chr13 5653258 5653279 -96219890 + AT_rich Low_complexity Low_complexity 1 21 0 2554 62 7 3 chr13 5665265 5665574 -96207595 - AluY SINE Alu -1 310 1 21 0 0 0 chr13 5665632 5665653 -96207516 + AT_rich Low_complexity Low_complexity 1 21 0 1520 148 26 4 chr13 5665923 5666153 -96207016 - MER46A DNA MER2_type -1 235 1 213 278 33 56 chr13 5666320 5666410 -96206759 + MIR3 SINE MIR 73 160 -48 2270 100 0 0 chr13 5666892 5667192 -96205977 + AluSg1 SINE Alu 1 300 -9 245 167 0 45 chr13 5668763 5668829 -96204340 + GA-rich Low_complexity Low_complexity 2 64 0 27 0 0 0 chr13 5669378 5669405 -96203764 + AT_rich Low_complexity Low_complexity 1 27 0 2183 116 0 3 chr13 5669621 5669931 -96203238 - AluSg1 SINE Alu 0 309 1 27 0 0 0 chr13 5670696 5670723 -96202446 + AT_rich Low_complexity Low_complexity 1 27 0 268 341 81 32 chr13 5671048 5671171 -96201998 - L2 LINE L2 -28 3244 3116 24 53 0 0 chr13 5671478 5671516 -96201653 + AT_rich Low_complexity Low_complexity 1 38 0 192 311 100 33 chr13 5671720 5671810 -96201359 + MIR SINE MIR 97 192 -70 406 267 153 28 chr13 5672115 5672291 -96200878 - L2 LINE L2 -157 3115 2918 228 247 169 26 chr13 5672312 5672389 -96200780 - L2 LINE L2 -22 3250 3163 237 262 36 12 chr13 5672851 5672935 -96200234 - L2 LINE L2 -926 2388 2303 431 258 113 25 chr13 5673217 5673376 -96199793 - MIR SINE MIR -87 175 3 245 339 184 30 chr13 5673429 5673933 -96199236 - L2 LINE L2 -1112 2202 1621 2243 119 40 57 chr13 5674801 5675171 -96197998 + THE1B LTR MaLR 1 364 0 383 264 50 36 chr13 5675580 5675720 -96197449 + MARNA DNA Mariner 248 389 -197 1122 232 50 53 chr13 5675727 5676106 -96197063 + L1ME3A LINE L1 5788 6165 -5 31 82 0 0 chr13 5680814 5680887 -96192282 + AT_rich Low_complexity Low_complexity 1 73 0 369 296 64 0 chr13 5680931 5681056 -96192113 - MER94 DNA DNA 0 134 2 21 36 0 0 chr13 5682328 5682356 -96190813 + AT_rich Low_complexity Low_complexity 1 28 0 2179 110 0 31 chr13 5682377 5682695 -96190474 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 5682817 5682838 -96190331 + AT_rich Low_complexity Low_complexity 1 21 0 408 274 32 25 chr13 5683201 5683358 -96189811 - L1ME3 LINE L1 -7 6155 5998 2168 113 3 0 chr13 5684198 5684490 -96188679 - AluSq SINE Alu -12 301 9 2228 121 0 0 chr13 5684938 5685244 -96187925 + AluSq SINE Alu 1 306 -7 184 116 163 23 chr13 5685939 5685982 -96187187 + L2 LINE L2 3219 3267 -5 2419 105 0 0 chr13 5686025 5686329 -96186840 - AluSx SINE Alu -8 304 1 2257 100 3 0 chr13 5686332 5686652 -96186517 - AluSq SINE Alu 0 321 1 2259 90 7 0 chr13 5686679 5686969 -96186200 - AluSq SINE Alu -21 292 1 232 236 163 65 chr13 5687381 5687504 -96185665 - MIR3 SINE MIR -34 174 40 1960 97 0 0 chr13 5687776 5688024 -96185145 - AluSq SINE Alu -65 248 1 222 242 39 102 chr13 5689922 5690050 -96183119 + MIR3 SINE MIR 83 202 -6 2327 99 3 0 chr13 5690688 5691000 -96182169 - AluSq SINE Alu 0 313 1 369 109 0 0 chr13 5691158 5691213 -96181956 + (TTGG)n Simple_repeat Simple_repeat 1 55 0 2247 88 0 3 chr13 5691794 5692105 -96181064 - AluY SINE Alu 0 310 1 2243 104 0 3 chr13 5692652 5692951 -96180218 - AluY SINE Alu -13 298 1 2154 127 0 0 chr13 5692965 5693264 -96179905 - AluY SINE Alu -12 299 1 1430 208 20 60 chr13 5693372 5693772 -96179397 - L1MA10 LINE L1 -1 6333 5950 1902 129 0 85 chr13 5693787 5694128 -96179041 + AluSx SINE Alu 1 312 0 313 276 0 11 chr13 5694795 5694882 -96178287 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 111 22 89 chr13 5695066 5695111 -96178058 + Alu SINE Alu 85 126 -176 180 271 62 0 chr13 5695406 5695454 -96177715 + L2 LINE L2 3204 3254 -18 253 270 14 27 chr13 5695518 5695592 -96177577 + L2 LINE L2 2243 2315 -999 2173 73 12 76 chr13 5696602 5696931 -96176238 + AluSc SINE Alu 1 308 -1 324 303 119 88 chr13 5698087 5698800 -96174369 + L1M2 LINE L1 695 1429 -5420 184 257 57 43 chr13 5699289 5699359 -96173810 + L2 LINE L2 3116 3186 -86 1242 119 0 0 chr13 5699875 5700035 -96173134 + AluSx SINE Alu 1 160 -152 1814 154 48 3 chr13 5700076 5700408 -96172761 + L1MB7 LINE L1 5822 6168 -16 1743 113 132 4 chr13 5701582 5701847 -96171322 - AluSx SINE Alu -13 299 1 202 211 19 0 chr13 5702524 5702576 -96170593 + CT-rich Low_complexity Low_complexity 4 56 0 243 0 0 0 chr13 5703227 5703254 -96169915 + (TG)n Simple_repeat Simple_repeat 1 27 0 264 59 0 0 chr13 5703254 5703288 -96169881 + (GA)n Simple_repeat Simple_repeat 2 35 0 228 67 0 0 chr13 5703627 5703657 -96169512 + (TAA)n Simple_repeat Simple_repeat 1 30 0 480 272 63 32 chr13 5703669 5703827 -96169342 - MIR SINE MIR -18 244 82 276 264 136 16 chr13 5703889 5704014 -96169155 + L3 LINE CR1 1174 1313 -264 236 264 186 8 chr13 5704156 5704285 -96168884 - MIR SINE MIR -109 153 2 360 0 0 0 chr13 5704459 5704499 -96168670 + (CA)n Simple_repeat Simple_repeat 1 40 0 1304 114 5 0 chr13 5705245 5705429 -96167740 - AluSq SINE Alu 0 313 129 22 88 0 0 chr13 5705591 5705648 -96167521 + AT_rich Low_complexity Low_complexity 1 57 0 1278 134 4 78 chr13 5705887 5706119 -96167050 - AluJo SINE Alu -13 299 85 1021 150 17 11 chr13 5707903 5708083 -96165086 - Tigger1 DNA MER2_type 0 2418 2238 1068 70 0 0 chr13 5708083 5708212 -96164957 + AluY SINE Alu 1 129 -182 347 44 0 0 chr13 5708214 5708259 -96164910 + AluY SINE Alu 252 296 -6 * 11861 110 18 10 chr13 5708257 5708461 -96164708 - Tigger1 DNA MER2_type -631 1787 1586 2175 123 7 0 chr13 5708461 5708761 -96164408 - AluSq SINE Alu -11 302 1 11861 110 18 10 chr13 5708761 5710281 -96162888 - Tigger1 DNA MER2_type -832 1586 46 2515 55 0 10 chr13 5710281 5710590 -96162579 + AluY SINE Alu 1 306 -5 11861 110 18 10 chr13 5710590 5710609 -96162560 - Tigger1 DNA MER2_type -2372 46 29 647 76 0 0 chr13 5710963 5711055 -96162114 + L1P5 LINE L1 5405 5496 -658 22 56 0 0 chr13 5711333 5711369 -96161800 + AT_rich Low_complexity Low_complexity 1 36 0 312 145 0 0 chr13 5711716 5711786 -96161383 + Alu SINE Alu 248 299 -2 2421 70 6 13 chr13 5711847 5712160 -96161009 - AluY SINE Alu 0 311 1 1885 94 106 0 chr13 5712161 5712436 -96160733 - AluSp SINE Alu -9 304 1 2468 57 0 10 chr13 5714734 5715031 -96158138 + AluY SINE Alu 1 294 -17 2046 149 0 7 chr13 5715164 5715472 -96157697 - AluSx SINE Alu -6 306 1 2154 120 3 3 chr13 5715735 5716034 -96157135 - AluSp SINE Alu -14 299 1 2394 75 0 0 chr13 5716779 5717074 -96156095 + AluY SINE Alu 1 295 -16 2355 112 0 3 chr13 5717776 5718089 -96155080 - AluSx SINE Alu 0 312 1 827 227 92 14 chr13 5718384 5718666 -96154503 + MER113 DNA MER1_type? 28 331 -190 490 202 52 88 chr13 5718666 5718754 -96154415 + L1M4 LINE L1 3001 3091 -3055 2151 97 3 7 chr13 5718754 5719043 -96154126 + AluSx SINE Alu 1 288 -24 490 202 52 88 chr13 5719043 5719226 -96153943 + L1M4 LINE L1 3091 3262 -2884 2115 113 17 0 chr13 5719234 5719525 -96153644 + AluSq SINE Alu 3 298 -15 708 292 144 42 chr13 5719788 5720543 -96152626 + L1M4 LINE L1 4323 5186 -960 1905 150 27 0 chr13 5720543 5720836 -96152333 + AluJo SINE Alu 1 301 -11 708 292 144 42 chr13 5720836 5720980 -96152189 + L1M4 LINE L1 5186 5314 -832 1760 166 7 0 chr13 5721265 5721561 -96151608 - AluSx SINE Alu -14 298 1 280 280 50 38 chr13 5724956 5725210 -96147959 + ALR/Alpha Satellite centromeric 1 257 -1 234 314 13 32 chr13 5725225 5725381 -96147788 + ALR/Alpha Satellite centromeric 15 167 -5 2506 54 10 0 chr13 5725415 5725711 -96147458 - AluY SINE Alu -12 299 1 1615 227 55 23 chr13 5726270 5726706 -96146463 - MER31B LTR ERV1 -10 456 7 877 135 122 80 chr13 5726709 5726896 -96146273 - MER31B-int LTR ERV1 -17 4919 4718 2566 65 0 3 chr13 5726896 5727206 -96145963 + AluY SINE Alu 1 309 -2 877 135 122 80 chr13 5727206 5727255 -96145914 - MER31B-int LTR ERV1 -218 4718 4673 353 152 0 38 chr13 5727428 5727507 -96145662 - LTR37A LTR ERV1 -310 116 41 631 208 44 25 chr13 5727508 5727667 -96145502 - MER31B-int LTR ERV1 -657 4279 4118 10842 93 22 1 chr13 5727858 5730148 -96143021 - L1PA7 LINE L1 -5 6149 3815 6991 95 24 1 chr13 5730149 5731160 -96142009 + L1P LINE L1 2645 3678 -2468 794 195 95 0 chr13 5731165 5731204 -96141965 - MER31B-int LTR ERV1 -813 4123 4089 2263 98 3 10 chr13 5731204 5731500 -96141669 - AluSg SINE Alu -16 294 1 794 195 95 0 chr13 5731500 5731629 -96141540 - MER31B-int LTR ERV1 -847 4089 3939 230 203 63 51 chr13 5731629 5731708 -96141461 - MLT1A2 LTR MaLR -58 316 237 2369 144 103 135 chr13 5731708 5732201 -96140968 - MER31B-int LTR ERV1 -1078 3858 3396 2227 101 7 0 chr13 5732201 5732497 -96140672 - AluY SINE Alu -13 298 1 2369 144 103 135 chr13 5732497 5732766 -96140403 - MER31B-int LTR ERV1 -1540 3396 3120 1669 148 162 73 chr13 5732767 5733138 -96140031 - MER4A LTR ERV1 0 664 261 473 156 89 0 chr13 5733138 5733228 -96139941 - MER4A LTR ERV1 -566 98 1 1496 247 27 25 chr13 5733233 5733675 -96139494 - MER31B-int LTR ERV1 -1819 3117 2675 2562 61 0 0 chr13 5733676 5733987 -96139182 + AluY SINE Alu 1 311 0 1976 92 86 3 chr13 5734001 5734275 -96138894 + MER4E LTR ERV1 1 304 -462 180 0 0 0 chr13 5734275 5734295 -96138874 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 1976 92 86 3 chr13 5734295 5734312 -96138857 + MER4E LTR ERV1 304 317 -449 2634 147 40 4 chr13 5734312 5734618 -96138551 - LTR19A LTR ERV1 0 486 156 3562 111 24 29 chr13 5734618 5735168 -96138001 - LTR10B LTR ERV1 0 547 1 2634 147 40 4 chr13 5735168 5735330 -96137839 - LTR19A LTR ERV1 -330 156 1 2877 65 4 152 chr13 5735330 5735358 -96137811 + MER4E LTR ERV1 311 341 -425 1463 87 82 19 chr13 5735358 5735566 -96137603 - AluSc SINE Alu -12 297 77 2877 65 4 152 chr13 5735566 5735840 -96137329 + MER4E LTR ERV1 341 654 -112 2260 118 0 3 chr13 5735840 5736145 -96137024 - AluSq SINE Alu -9 304 1 2877 65 4 152 chr13 5736145 5736188 -96136981 + MER4E LTR ERV1 654 702 -64 2357 94 3 0 chr13 5736188 5736486 -96136683 - AluSp SINE Alu -14 299 1 2877 65 4 152 chr13 5736486 5736665 -96136504 + MER4E LTR ERV1 702 759 -7 5153 178 106 85 chr13 5736672 5738053 -96135116 - MER31B-int LTR ERV1 -2258 2678 1251 2239 123 0 0 chr13 5738053 5738354 -96134815 - AluSx SINE Alu -11 301 1 5153 178 106 85 chr13 5738354 5738731 -96134438 - MER31B-int LTR ERV1 -3685 1251 883 1613 221 75 107 chr13 5738738 5739459 -96133710 - MER31B-int LTR ERV1 -4197 739 42 2137 128 0 3 chr13 5739528 5739824 -96133345 - AluSx SINE Alu -17 295 1 1006 147 153 1 chr13 5739866 5740193 -96132976 - MER31B LTR ERV1 0 466 47 887 216 10 113 chr13 5740190 5740336 -96132833 - MER21B LTR ERV1 -601 262 159 * 2493 80 0 0 chr13 5740336 5740647 -96132522 + AluY SINE Alu 1 311 0 887 216 10 113 chr13 5740647 5740792 -96132377 - MER21B LTR ERV1 -704 159 1 376 262 24 0 chr13 5741686 5741770 -96131399 + MIR SINE MIR 20 105 -157 193 327 0 0 chr13 5741804 5741856 -96131313 + MIR SINE MIR 197 248 -14 226 253 93 47 chr13 5743185 5743335 -96129834 - L1MC5 LINE L1 -48 7913 7757 1511 173 63 70 chr13 5743717 5744018 -96129151 - AluJb SINE Alu -13 299 1 21 0 0 0 chr13 5744973 5744994 -96128175 + AT_rich Low_complexity Low_complexity 1 21 0 230 215 0 15 chr13 5745172 5745237 -96127932 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 22 35 0 0 chr13 5745318 5745347 -96127822 + AT_rich Low_complexity Low_complexity 1 29 0 2446 110 0 46 chr13 5745503 5745894 -96127275 - L1PB3 LINE L1 0 6154 5782 33 0 0 0 chr13 5745918 5745951 -96127218 + AT_rich Low_complexity Low_complexity 1 33 0 352 123 0 84 chr13 5745951 5746034 -96127135 - L1PB3 LINE L1 -360 5791 5727 1185 126 0 0 chr13 5746034 5746208 -96126961 - AluY SINE Alu -2 309 136 1248 88 57 0 chr13 5746208 5746400 -96126769 - L1PB3 LINE L1 -421 5733 5531 252 300 18 40 chr13 5746541 5746797 -96126372 + ALR/Alpha Satellite centromeric 1 250 -5 1064 41 0 0 chr13 5746831 5746953 -96126216 - AluY SINE Alu -12 299 178 340 260 41 37 chr13 5746960 5747590 -96125579 + ALR/Alpha Satellite centromeric 1 632 -23 234 265 48 42 chr13 5747699 5747865 -96125304 + ALR/Alpha Satellite centromeric 1 167 -5 414 256 20 20 chr13 5748139 5748349 -96124820 + ALR/Alpha Satellite centromeric 1 210 -40 2327 93 3 0 chr13 5748416 5748717 -96124452 + AluSp SINE Alu 1 302 -11 244 261 31 23 chr13 5748776 5748906 -96124263 + ALR/Alpha Satellite centromeric 1 131 -41 294 267 30 22 chr13 5748962 5749097 -96124072 + ALR/Alpha Satellite centromeric 15 150 -22 243 303 25 33 chr13 5750144 5750266 -96122903 - MIR SINE MIR -50 212 92 1550 157 6 52 chr13 5750345 5750531 -96122638 - MER4A LTR ERV1 -1 663 470 2345 103 3 0 chr13 5750531 5750833 -96122336 + AluSx SINE Alu 1 303 -9 1550 157 6 52 chr13 5750833 5751007 -96122162 - MER4A LTR ERV1 -194 470 261 510 124 90 0 chr13 5751007 5751096 -96122073 - MER4A LTR ERV1 -566 98 2 254 70 139 0 chr13 5753139 5753182 -96119987 + L1MB8 LINE L1 6127 6175 -3 2701 42 0 3 chr13 5753407 5753719 -96119450 - AluY SINE Alu 0 311 1 205 254 146 18 chr13 5753738 5753848 -96119321 - MIR SINE MIR -107 155 32 2065 121 0 0 chr13 5753995 5754276 -96118893 + AluSx SINE Alu 14 294 -18 360 127 27 136 chr13 5754431 5754541 -96118628 + MER53 DNA DNA 4 101 -88 183 247 137 14 chr13 5755128 5755201 -96117968 + MIR SINE MIR 124 205 -57 180 286 0 0 chr13 5755810 5755859 -96117310 + MIR SINE MIR 204 252 -10 278 339 65 11 chr13 5756023 5756209 -96116960 - MIR SINE MIR -28 234 39 180 0 0 0 chr13 5756803 5756823 -96116346 + (TTA)n Simple_repeat Simple_repeat 2 21 0 228 276 118 0 chr13 5758054 5758130 -96115039 + MIR SINE MIR 62 146 -62 203 176 137 0 chr13 5758714 5758765 -96114404 + MER91 DNA MER1_type 58 115 -75 191 320 27 0 chr13 5758971 5759046 -96114123 - L2 LINE L2 -5 3267 3191 221 125 21 21 chr13 5759118 5759166 -96114003 + (TA)n Simple_repeat Simple_repeat 1 48 0 1704 160 6 58 chr13 5759257 5759369 -96113800 + AluJo SINE Alu 1 117 -195 2165 138 3 0 chr13 5759369 5759667 -96113502 + AluSx SINE Alu 1 299 -13 1704 160 6 58 chr13 5759667 5759879 -96113290 + AluJo SINE Alu 117 308 -4 2917 185 9 30 chr13 5760249 5760807 -96112362 + MLT2B3 LTR ERVL 1 546 -8 2176 152 67 34 chr13 5761194 5761715 -96111454 + MLT2A2 LTR ERVL 1 552 -2 235 236 36 0 chr13 5761822 5761877 -96111292 + MIR SINE MIR 92 148 -114 2953 129 13 76 chr13 5761878 5762404 -96110765 + Tigger1 DNA MER2_type 2 494 -1924 4682 131 35 3 chr13 5762407 5763139 -96110030 + L1PA16 LINE L1 5387 6142 -24 3286 127 12 2 chr13 5763161 5763665 -96109504 + Tigger1 DNA MER2_type 480 988 -1430 1153 100 29 18 chr13 5763665 5763835 -96109334 + THE1C LTR MaLR 1 172 -203 672 248 7 26 chr13 5763857 5764010 -96109159 - MER45A DNA AcHobo -1 177 28 2434 96 3 0 chr13 5764241 5764553 -96108616 + AluSp SINE Alu 1 313 0 1072 129 17 11 chr13 5764553 5764731 -96108438 + AluSg/x SINE Alu 134 312 0 300 283 138 25 chr13 5765419 5765744 -96107425 - L1M4 LINE L1 -2931 3215 2854 266 247 39 0 chr13 5766031 5766108 -96107061 - L1M4 LINE L1 -3750 2396 2317 209 316 89 30 chr13 5766285 5766453 -96106716 - L2 LINE L2 -117 3196 3019 354 262 136 0 chr13 5766464 5766567 -96106602 - L2 LINE L2 -8 3305 3189 791 294 151 22 chr13 5766594 5767067 -96106102 - L2 LINE L2 -307 3006 2457 358 176 15 0 chr13 5767513 5767581 -96105588 + MLT2B3 LTR ERVL 3 71 -483 2009 160 134 46 chr13 5767680 5768112 -96105057 + MLT2B3 LTR ERVL 77 546 -8 385 281 69 44 chr13 5768203 5768292 -96104877 + ERVL LTR ERVL 5214 5310 -454 2466 126 28 11 chr13 5768292 5768650 -96104519 + THE1B LTR MaLR 1 364 0 385 281 69 44 chr13 5768650 5768720 -96104449 + ERVL LTR ERVL 5310 5377 -387 2352 214 105 2 chr13 5769009 5769523 -96103646 - MLT1F1 LTR MaLR 0 567 1 277 179 18 0 chr13 5769549 5769605 -96103564 + LTR67 LTR ERVL 6 62 -495 257 274 24 12 chr13 5769863 5769947 -96103222 + LTR67 LTR ERVL 433 517 -40 451 51 0 0 chr13 5770027 5770086 -96103083 - L1PA3 LINE L1 -1009 5137 5079 8262 18 1 0 chr13 5770086 5771089 -96102080 + L1PA3 LINE L1 5149 6152 -3 22 0 0 0 chr13 5771089 5771111 -96102058 + AT_rich Low_complexity Low_complexity 1 22 0 614 101 0 0 chr13 5771270 5771349 -96101820 + AluSg/x SINE Alu 218 296 -13 901 226 98 16 chr13 5771723 5772028 -96101141 - MLT2C1 LTR ERVL -6 391 62 2289 98 0 28 chr13 5772204 5772522 -96100647 - AluY SINE Alu -2 309 1 2343 104 13 0 chr13 5772709 5773017 -96100152 + AluSx SINE Alu 1 312 0 1060 167 118 29 chr13 5774295 5774540 -96098629 - AluJo SINE Alu -8 304 38 256 272 193 9 chr13 5774710 5774824 -96098345 + MIR SINE MIR 11 145 -117 367 203 163 65 chr13 5775964 5776087 -96097082 - MIR SINE MIR -82 180 46 406 216 26 37 chr13 5776382 5776514 -96096655 + L1MD3 LINE L1 5509 5627 -539 800 241 111 26 chr13 5776518 5776578 -96096591 + L1MD3 LINE L1 5943 5997 -1998 2213 119 0 0 chr13 5776578 5776872 -96096297 + AluSx SINE Alu 1 294 -18 800 241 111 26 chr13 5776872 5777179 -96095990 + L1MD3 LINE L1 5997 7995 0 4695 146 53 15 chr13 5778292 5779169 -96094000 + L1MC2 LINE L1 5198 6108 -236 2194 97 31 0 chr13 5779173 5779463 -96093706 + AluSx SINE Alu 1 299 -13 1190 250 3 20 chr13 5779606 5779783 -96093386 + L1ME LINE L1 5406 5578 -588 2500 76 0 0 chr13 5779783 5780087 -96093082 - AluY SINE Alu -7 304 1 1190 250 3 20 chr13 5780087 5780205 -96092964 + L1ME LINE L1 5578 5696 -470 1301 235 71 55 chr13 5780208 5780659 -96092510 - MER101 LTR ERV1 -4 470 13 272 150 0 0 chr13 5780662 5780702 -96092467 + L1ME LINE L1 5694 5733 -429 1841 168 42 81 chr13 5780954 5781360 -96091809 - MLT1B LTR MaLR 0 390 1 312 235 67 123 chr13 5781670 5781849 -96091320 - MIR SINE MIR -88 174 6 23 54 0 0 chr13 5782238 5782275 -96090894 + AT_rich Low_complexity Low_complexity 1 37 0 181 227 0 0 chr13 5782884 5782928 -96090241 - L2 LINE L2 0 3313 3270 384 234 76 145 chr13 5783623 5784161 -96089008 - L1M2 LINE L1 -5704 1145 645 23 0 0 0 chr13 5784284 5784307 -96088862 + GC_rich Low_complexity Low_complexity 1 23 0 679 296 98 22 chr13 5785179 5785793 -96087376 + L2 LINE L2 2524 3283 -30 721 263 52 73 chr13 5786018 5786097 -96087072 - L1ME3 LINE L1 -2 6658 6579 1533 171 90 31 chr13 5786097 5786419 -96086750 + MER2 DNA MER2_type 1 341 -3 721 263 52 73 chr13 5786419 5786666 -96086503 - L1ME3 LINE L1 -81 6579 6339 2380 60 0 0 chr13 5786677 5786962 -96086207 - AluY SINE Alu -3 308 24 582 231 172 14 chr13 5786962 5787252 -96085917 - L1ME3 LINE L1 -691 5971 5647 3892 238 53 34 chr13 5787352 5788599 -96084570 - L1ME3 LINE L1 -2679 3965 2743 2336 119 0 0 chr13 5788599 5788909 -96084260 - AluSg SINE Alu 0 310 1 3892 238 53 34 chr13 5788909 5789161 -96084008 - L1ME3 LINE L1 -3901 2743 2465 1997 135 3 10 chr13 5789161 5789458 -96083711 + AluSx SINE Alu 1 295 -17 3892 238 53 34 chr13 5789458 5789482 -96083687 - L1ME3 LINE L1 -4179 2465 2443 518 45 0 0 chr13 5789512 5789579 -96083590 - L1PB1 LINE L1 -1 6150 6084 2148 122 0 3 chr13 5789581 5789875 -96083294 - AluSx SINE Alu -10 302 10 416 170 160 10 chr13 5789882 5789982 -96083187 - LTR47A LTR ERVL -77 375 261 738 228 78 25 chr13 5790237 5790531 -96082638 - L1ME3 LINE L1 -5159 1666 1169 270 331 122 17 chr13 5790528 5790709 -96082460 - L1ME3 LINE L1 -6166 659 460 * 375 188 196 45 chr13 5790771 5790883 -96082286 + L2 LINE L2 3185 3313 0 2133 104 3 7 chr13 5791376 5791664 -96081505 - AluSq SINE Alu -13 300 14 435 294 64 64 chr13 5792429 5792924 -96080245 + L1M2 LINE L1 4915 5415 -780 2298 113 0 0 chr13 5792924 5793235 -96079934 + AluY SINE Alu 1 311 0 435 294 64 64 chr13 5793235 5793273 -96079896 + L1M2 LINE L1 5415 5452 -743 22 70 0 0 chr13 5794881 5794924 -96078245 + AT_rich Low_complexity Low_complexity 1 43 0 193 308 29 29 chr13 5795106 5795210 -96077959 - MIR SINE MIR -93 169 66 192 97 0 0 chr13 5797144 5797175 -96075994 + (CA)n Simple_repeat Simple_repeat 2 32 0 2027 130 33 0 chr13 5797917 5798216 -96074953 + AluSp SINE Alu 1 309 -4 2571 20 7 3 chr13 5798234 5798529 -96074640 + AluY SINE Alu 1 296 -15 2586 256 112 24 chr13 5798530 5799698 -96073471 + HAL1 LINE L1 1232 2502 -5 389 302 12 69 chr13 5801031 5801107 -96072062 - LTR33 LTR ERVL 0 521 442 2563 42 7 13 chr13 5801107 5801414 -96071755 - AluY SINE Alu -6 305 1 389 302 12 69 chr13 5801414 5801572 -96071597 - LTR33 LTR ERVL -79 442 295 2057 93 61 0 chr13 5802082 5802360 -96070809 - AluSc SINE Alu -14 295 1 2635 181 137 108 chr13 5802767 5803187 -96069982 + L1MC3 LINE L1 6662 7069 -716 368 247 11 0 chr13 5803187 5803276 -96069893 + MLT1F1 LTR MaLR 35 124 -443 2635 181 137 108 chr13 5803276 5803719 -96069450 + L1MC3 LINE L1 7069 7640 -145 1503 147 0 16 chr13 5804649 5804894 -96068275 + AluJo SINE Alu 60 300 -12 1984 99 53 11 chr13 5805339 5805623 -96067546 - AluSp SINE Alu -11 302 7 1066 98 0 0 chr13 5805631 5805763 -96067406 - AluSq/x SINE Alu -181 132 1 1743 241 67 30 chr13 5805881 5806541 -96066628 - L1MCc LINE L1 -5086 1337 654 262 176 20 0 chr13 5806645 5806696 -96066473 - MLT1A1 LTR MaLR -4 361 310 1704 187 10 0 chr13 5806698 5806992 -96066177 - AluJo SINE Alu -14 298 2 542 224 26 13 chr13 5806995 5807147 -96066022 - L1MCc LINE L1 -6246 177 24 1165 206 5 0 chr13 5809953 5810152 -96063017 + Tigger3(Golem) DNA MER2_type 1 200 -2829 224 250 0 0 chr13 5811933 5811989 -96061180 - MIR SINE MIR -172 90 35 983 185 16 11 chr13 5812998 5813182 -96059987 + AluJo SINE Alu 115 299 -13 326 281 248 0 chr13 5814130 5814283 -96058886 + MIR SINE MIR 28 218 -44 2109 107 0 14 chr13 5814453 5814742 -96058427 + AluSx SINE Alu 21 305 -7 181 280 65 19 chr13 5814887 5814994 -96058175 - L2 LINE L2 -913 2401 2290 185 304 74 45 chr13 5815290 5815533 -96057636 - L2 LINE L2 -1103 2211 1962 292 242 96 107 chr13 5815664 5815842 -96057327 - Charlie8 DNA MER1_type -2239 178 3 218 283 106 31 chr13 5816393 5816522 -96056647 + MIR SINE MIR 21 157 -66 2129 126 13 3 chr13 5817956 5818258 -96054911 - AluSq SINE Alu -8 305 1 2135 138 0 3 chr13 5818258 5818563 -96054606 - AluSx SINE Alu -6 306 3 2187 74 0 4 chr13 5818581 5818851 -96054318 - AluY SINE Alu -7 304 36 240 297 79 0 chr13 5818925 5819026 -96054143 - L2 LINE L2 -31 3241 3133 2635 215 16 23 chr13 5819956 5820514 -96052655 - MLT2B3 LTR ERVL 0 554 1 360 294 77 16 chr13 5820913 5821107 -96052062 + MIR SINE MIR 24 229 -33 195 263 0 18 chr13 5821618 5821675 -96051494 - L2 LINE L2 0 3313 3258 1921 133 25 3 chr13 5821790 5822076 -96051093 - AluSx SINE Alu -20 292 1 773 234 93 80 chr13 5822107 5822556 -96050613 - LTR26 LTR ERV1 -10 593 139 395 250 53 88 chr13 5822699 5822858 -96050311 - MER87 LTR ERV1 -393 148 1 536 224 255 19 chr13 5823797 5823958 -96049211 - MER63A DNA MER1_type 0 210 12 2348 101 0 3 chr13 5824259 5824555 -96048614 + AluSx SINE Alu 1 295 -17 542 277 36 54 chr13 5824810 5825034 -96048135 + Charlie8 DNA MER1_type 66 285 -2132 1130 134 76 54 chr13 5825562 5825786 -96047383 + MLT2B2 LTR ERVL 2 230 -285 542 167 9 0 chr13 5825786 5825894 -96047275 + CT-rich Low_complexity Low_complexity 1 109 0 1367 213 11 57 chr13 5825894 5826202 -96046967 + MLT2B3 LTR ERVL 217 509 -45 423 0 0 0 chr13 5826202 5826249 -96046920 + (CA)n Simple_repeat Simple_repeat 2 48 0 1367 213 11 57 chr13 5826249 5826293 -96046876 + MLT2B3 LTR ERVL 509 553 -1 452 244 34 0 chr13 5826302 5826421 -96046748 - MIR SINE MIR -70 192 70 452 352 86 12 chr13 5826471 5826798 -96046371 - L3 LINE CR1 -244 1333 983 446 258 39 16 chr13 5826836 5826964 -96046205 - MER94 DNA DNA -3 131 1 236 210 122 117 chr13 5827204 5827409 -96045760 + MLT1H LTR MaLR 130 335 -214 523 267 62 0 chr13 5827708 5827903 -96045266 - MIR SINE MIR 0 262 56 257 281 123 48 chr13 5828067 5828213 -96044956 + MIR SINE MIR 20 176 -86 312 319 211 0 chr13 5828736 5828940 -96044229 + MIR SINE MIR 2 248 -14 1559 268 136 23 chr13 5829218 5829532 -96043637 + L1MC4 LINE L1 6254 6531 -1511 2211 169 5 23 chr13 5829532 5829929 -96043240 + MLT1B LTR MaLR 1 390 0 1559 268 136 23 chr13 5829929 5830340 -96042829 + L1MC4 LINE L1 6531 8025 -17 2479 130 46 30 chr13 5830373 5830812 -96042357 + L1MB2 LINE L1 5521 5966 -217 1766 159 42 89 chr13 5830812 5830915 -96042254 + MER47A DNA MER2_type 1 107 -2216 2001 94 100 60 chr13 5830915 5831265 -96041904 + THE1B LTR MaLR 1 364 0 1766 159 42 89 chr13 5831265 5831544 -96041625 + MER47A DNA MER2_type 107 365 -1 910 167 25 20 chr13 5831544 5831742 -96041427 + L1MB2 LINE L1 5964 6162 -9 227 263 0 62 chr13 5831946 5832026 -96041143 + L2 LINE L2 3186 3260 -12 235 266 21 43 chr13 5833141 5833235 -96039934 - MIR3 SINE MIR -54 154 63 53 49 0 0 chr13 5834092 5834173 -96038996 + AT_rich Low_complexity Low_complexity 1 81 0 350 304 23 84 chr13 5837208 5837422 -96035747 - L2 LINE L2 -430 2884 2684 916 208 23 32 chr13 5839308 5839529 -96033640 + MER20 DNA MER1_type 1 219 0 2242 117 0 3 chr13 5840402 5840710 -96032459 + AluSx SINE Alu 1 307 -5 427 280 35 55 chr13 5840789 5840989 -96032180 + MIR SINE MIR 1 196 -66 479 250 26 0 chr13 5840991 5841107 -96032062 + MER5A DNA MER1_type 1 119 -70 260 226 32 0 chr13 5841126 5841188 -96031981 + MIR SINE MIR 189 252 -10 1850 83 0 0 chr13 5841193 5841421 -96031748 + AluY SINE Alu 83 310 -1 2289 105 3 0 chr13 5841790 5842095 -96031074 + AluSc SINE Alu 1 306 -3 603 146 48 37 chr13 5842446 5842926 -96030243 + L1MC2 LINE L1 6142 6615 -1170 1847 156 78 23 chr13 5842926 5843272 -96029897 - MLT1A1 LTR MaLR 0 365 1 603 146 48 37 chr13 5843272 5843405 -96029764 + L1MC2 LINE L1 6615 7763 -22 390 21 0 0 chr13 5843437 5843484 -96029685 + (GA)n Simple_repeat Simple_repeat 2 48 0 808 262 41 22 chr13 5843968 5844235 -96028934 + MLT1L LTR MaLR 5 276 -339 3985 110 169 44 chr13 5844373 5845103 -96028066 + LTR12 LTR ERV1 5 825 -1 37367 86 8 8 chr13 5845104 5850082 -96023087 + HERV17 LTR ERV1 17 4954 -1960 629 131 214 16 chr13 5850075 5850327 -96022842 + HERV17 LTR ERV1 703 1141 -5755 * 7028 100 72 59 chr13 5850323 5852701 -96020468 + HERV17 LTR ERV1 504 2438 0 369 289 83 0 chr13 5852841 5852962 -96020207 + MLT1L LTR MaLR 483 613 -2 1717 108 0 12 chr13 5853291 5853532 -96019637 + AluSc SINE Alu 1 238 -71 218 225 0 0 chr13 5853543 5853583 -96019586 + polypurine Low_complexity Low_complexity 4 43 0 479 244 41 16 chr13 5853738 5853861 -96019308 - L1ME2 LINE L1 -21 6143 6018 807 259 44 14 chr13 5853940 5854242 -96018927 - L1ME2 LINE L1 -180 6482 6236 487 353 77 0 chr13 5854242 5854514 -96018655 - LTR16A LTR ERVL 0 450 158 2916 228 33 41 chr13 5854624 5855340 -96017829 - L1ME2 LINE L1 -420 6242 5536 1688 180 28 0 chr13 5855340 5855629 -96017540 - AluJo SINE Alu -14 298 2 2916 228 33 41 chr13 5855629 5856318 -96016851 - L1ME2 LINE L1 -1126 5536 4843 242 222 0 32 chr13 5856322 5856385 -96016784 + CT-rich Low_complexity Low_complexity 3 63 0 1670 259 27 13 chr13 5856401 5856927 -96016242 - L1ME2 LINE L1 -2040 4604 4072 225 100 0 0 chr13 5857008 5857038 -96016131 + Alu SINE Alu 1 30 -269 1454 81 0 11 chr13 5857138 5857323 -96015846 - AluY SINE Alu -128 183 1 5528 219 50 65 chr13 5857699 5857757 -96015412 - L1MB7 LINE L1 -16 6562 6505 2164 119 7 0 chr13 5857757 5858052 -96015117 + AluSq SINE Alu 1 297 -16 5528 219 50 65 chr13 5858052 5859200 -96013969 - L1MB7 LINE L1 -73 6505 5341 786 197 0 14 chr13 5859200 5859342 -96013827 - FRAM SINE Alu -14 162 23 5528 219 50 65 chr13 5859342 5859494 -96013675 - L1MB7 LINE L1 -1237 5341 5188 1938 154 7 13 chr13 5859494 5859799 -96013370 + AluSq SINE Alu 1 303 -10 5528 219 50 65 chr13 5859799 5861507 -96011662 - L1MB7 LINE L1 -1390 5188 3456 2442 96 3 0 chr13 5861507 5861819 -96011350 - AluSp SINE Alu 0 313 1 2382 75 3 28 chr13 5861820 5862139 -96011030 - AluY SINE Alu 0 311 1 5528 219 50 65 chr13 5862139 5862972 -96010197 - L1MB7 LINE L1 -3121 3457 2606 23 0 0 0 chr13 5863032 5863055 -96010114 + AT_rich Low_complexity Low_complexity 1 23 0 5912 238 42 26 chr13 5863063 5864389 -96008780 - L1ME2 LINE L1 -4097 2728 1425 1896 145 38 30 chr13 5864389 5864761 -96008408 + THE1C LTR MaLR 1 375 0 5912 238 42 26 chr13 5864761 5865974 -96007195 - L1ME2 LINE L1 -5400 1425 10 518 87 0 0 chr13 5866542 5866611 -96006558 + AluSc SINE Alu 176 244 -65 5725 107 55 31 chr13 5866749 5866881 -96006288 - MER4-int LTR ERV1 -228 6370 6243 2883 9 0 3 chr13 5866881 5867200 -96005969 - AluYb8 SINE Alu 0 318 1 5725 107 55 31 chr13 5867200 5868120 -96005049 - MER4-int LTR ERV1 -355 6243 5290 2160 135 3 3 chr13 5868120 5868432 -96004737 + AluSx SINE Alu 1 312 0 2133 123 7 0 chr13 5868521 5868813 -96004356 - AluSx SINE Alu -18 294 1 21 36 0 0 chr13 5869016 5869044 -96004125 + AT_rich Low_complexity Low_complexity 1 28 0 525 268 81 78 chr13 5869109 5869650 -96003519 + HAL1 LINE L1 1198 1740 -767 2235 110 7 0 chr13 5870403 5870695 -96002474 + AluSx SINE Alu 1 294 -18 291 239 43 43 chr13 5870713 5870830 -96002339 + HAL1b LINE L1 795 911 -437 735 243 55 20 chr13 5870838 5871093 -96002076 + L1MB8 LINE L1 5915 6178 0 2456 71 0 0 chr13 5871108 5871402 -96001767 + AluY SINE Alu 1 294 -17 1978 105 35 0 chr13 5872327 5872510 -96000659 - AluSq SINE Alu 0 313 118 348 24 0 0 chr13 5872510 5872551 -96000618 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1978 105 35 0 chr13 5872551 5872673 -96000496 - AluSq SINE Alu -195 118 2 381 303 41 0 chr13 5873955 5874077 -95999092 - MIR SINE MIR -94 168 42 304 261 22 11 chr13 5874082 5874174 -95998995 + MIR SINE MIR 167 259 -3 2392 78 0 0 chr13 5874249 5874542 -95998627 + AluY SINE Alu 1 293 -18 405 271 42 14 chr13 5875165 5875309 -95997860 + MIR SINE MIR 113 260 -2 637 216 0 0 chr13 5875548 5875664 -95997505 + FLAM_C SINE Alu 1 116 -27 579 285 104 10 chr13 5876565 5876758 -95996411 + MIR SINE MIR 26 236 -26 1587 159 100 3 chr13 5876906 5877215 -95995954 - MER2 DNA MER2_type 0 345 7 2314 94 3 0 chr13 5877332 5877631 -95995538 + AluSx SINE Alu 1 300 -12 319 211 253 11 chr13 5878025 5878120 -95995049 + L2 LINE L2 3192 3309 -4 233 294 48 87 chr13 5878255 5878381 -95994788 - MIR SINE MIR -76 132 15 21 57 0 0 chr13 5879625 5879660 -95993509 + AT_rich Low_complexity Low_complexity 1 35 0 2513 66 0 0 chr13 5879683 5879984 -95993185 - AluY SINE Alu -10 301 1 309 232 0 89 chr13 5880637 5880749 -95992420 + MIR SINE MIR 79 180 -82 267 276 238 9 chr13 5880735 5880840 -95992329 - MIR3 SINE MIR -40 168 40 * 2357 77 3 3 chr13 5882051 5882350 -95990819 + AluY SINE Alu 1 299 -12 804 161 0 0 chr13 5882616 5882740 -95990429 - FRAM SINE Alu -16 160 37 939 183 31 101 chr13 5883228 5883953 -95989216 - MER4A LTR ERV1 0 695 1 272 356 44 0 chr13 5884053 5884143 -95989026 - L2 LINE L2 -31 3241 3148 2330 93 3 0 chr13 5884946 5885237 -95987932 + AluSp SINE Alu 1 292 -21 1590 185 49 0 chr13 5885867 5886154 -95987015 + AluJo SINE Alu 1 301 -11 211 260 0 84 chr13 5886453 5886562 -95986607 - L2 LINE L2 -1 3312 3185 191 173 19 0 chr13 5887153 5887205 -95985964 + A-rich Low_complexity Low_complexity 2 54 0 258 32 0 0 chr13 5887283 5887314 -95985855 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 143 0 0 chr13 5887404 5887446 -95985723 + AluS SINE Alu 23 64 -239 240 160 51 40 chr13 5887561 5887736 -95985433 + (CA)n Simple_repeat Simple_repeat 1 177 0 418 147 55 16 chr13 5887800 5888246 -95984923 + (CA)n Simple_repeat Simple_repeat 1 463 0 197 180 52 23 chr13 5888525 5888697 -95984472 + (CA)n Simple_repeat Simple_repeat 2 178 0 396 183 40 23 chr13 5888724 5889033 -95984136 + (CA)n Simple_repeat Simple_repeat 1 314 0 339 243 49 131 chr13 5889197 5889526 -95983643 - L1MC/D LINE L1 -2151 5657 5356 316 121 17 0 chr13 5889588 5889646 -95983523 - AluSp/q SINE Alu -4 299 241 2393 52 0 58 chr13 5890110 5890440 -95982729 - AluY SINE Alu 0 311 1 2358 35 0 67 chr13 5891093 5891406 -95981763 + AluY SINE Alu 1 292 -19 613 163 24 0 chr13 5891407 5891530 -95981639 + L1MA5 LINE L1 6169 6294 -6 1990 255 46 28 chr13 5891549 5892303 -95980866 - L1ME1 LINE L1 -6 6160 5393 3785 93 8 0 chr13 5893076 5893604 -95979565 - L1PB1 LINE L1 0 6151 5620 26 0 0 0 chr13 5893613 5893639 -95979530 + AT_rich Low_complexity Low_complexity 1 26 0 236 248 124 39 chr13 5894780 5894909 -95978260 - Charlie8 DNA MER1_type -2140 277 138 2340 61 41 0 chr13 5894982 5895275 -95977894 + AluY SINE Alu 1 305 -6 26 0 0 0 chr13 5896270 5896296 -95976873 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr13 5896309 5896333 -95976836 + AT_rich Low_complexity Low_complexity 1 24 0 201 231 31 108 chr13 5896568 5896633 -95976536 + L2 LINE L2 3213 3272 0 237 287 96 17 chr13 5896845 5896960 -95976209 + MIR SINE MIR 118 241 -21 700 179 40 104 chr13 5897159 5897360 -95975809 - MIR SINE MIR -8 254 67 294 256 78 0 chr13 5897401 5897491 -95975678 - MIR SINE MIR -36 226 130 863 171 91 6 chr13 5898662 5898838 -95974331 + MIR SINE MIR 44 234 -28 24 0 0 0 chr13 5899070 5899094 -95974075 + AT_rich Low_complexity Low_complexity 1 24 0 2300 103 3 0 chr13 5899427 5899729 -95973440 - AluSq SINE Alu -10 303 1 2090 147 0 22 chr13 5900265 5900584 -95972585 + AluSx SINE Alu 1 312 0 256 224 41 61 chr13 5900599 5900697 -95972472 + L3b LINE CR1 1352 1447 -136 2307 112 0 3 chr13 5900811 5901116 -95972053 - AluSc SINE Alu -2 307 4 21081 121 15 86 chr13 5902904 5907264 -95965905 + L1P LINE L1 12 4064 -2082 1601 69 0 0 chr13 5907271 5907474 -95965695 + L1PA7 LINE L1 5934 6136 -18 2482 102 65 105 chr13 5908407 5909037 -95964132 - MER4B LTR ERV1 0 779 3 3437 184 144 4 chr13 5909273 5909607 -95963562 + L1MC1 LINE L1 21 307 -6119 185 0 0 39 chr13 5909607 5909633 -95963536 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3437 184 144 4 chr13 5909633 5910123 -95963046 + L1MC1 LINE L1 307 961 -5465 9361 202 68 13 chr13 5910152 5915216 -95957953 + L1MC1 LINE L1 1281 6597 -16 26 0 0 0 chr13 5915437 5915463 -95957706 + AT_rich Low_complexity Low_complexity 1 26 0 1986 122 4 0 chr13 5916246 5916517 -95956652 + AluSx SINE Alu 1 272 -40 183 80 0 0 chr13 5916517 5916542 -95956627 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 468 258 88 25 chr13 5917456 5917615 -95955554 - MIR SINE MIR -35 227 59 441 169 36 26 chr13 5917683 5917853 -95955316 + MER3 DNA MER1_type 6 209 0 227 200 44 0 chr13 5917816 5917861 -95955308 - MER3 DNA MER1_type -123 86 40 * 294 95 0 0 chr13 5920204 5920246 -95952923 + (CA)n Simple_repeat Simple_repeat 2 43 0 1602 208 128 2 chr13 5920295 5920709 -95952460 - MER31B LTR ERV1 0 466 1 184 224 122 0 chr13 5920916 5920965 -95952204 - L2 LINE L2 -49 3223 3169 251 225 12 38 chr13 5920976 5921056 -95952113 + L1MC/D LINE L1 5824 5901 -1907 594 224 122 0 chr13 5922349 5922496 -95950673 - MIR SINE MIR -49 213 49 230 262 0 16 chr13 5922594 5922655 -95950514 + CT-rich Low_complexity Low_complexity 2 61 0 222 37 0 0 chr13 5923837 5923864 -95949305 + (TA)n Simple_repeat Simple_repeat 1 27 0 599 297 82 0 chr13 5923879 5924111 -95949058 + MIR SINE MIR 5 255 -7 323 283 99 13 chr13 5925380 5925532 -95947637 + L1M LINE L1 5264 5428 -734 626 290 63 90 chr13 5925536 5925655 -95947514 - L2 LINE L2 0 3313 3192 207 0 0 0 chr13 5925655 5925678 -95947491 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 99 17 3 chr13 5925680 5925973 -95947196 - AluSp SINE Alu -16 297 1 626 290 63 90 chr13 5925973 5926361 -95946808 - L2 LINE L2 -122 3191 2817 338 324 179 14 chr13 5926783 5926990 -95946179 - MIR SINE MIR -10 252 12 4607 152 29 51 chr13 5927191 5927856 -95945313 + L1MB8 LINE L1 5099 5726 -452 1413 152 105 99 chr13 5927856 5928218 -95944951 + MLT1A1 LTR MaLR 2 365 0 4607 152 29 51 chr13 5928218 5928662 -95944507 + L1MB8 LINE L1 5726 6178 0 558 292 22 15 chr13 5929569 5929774 -95943395 + MIR SINE MIR 56 262 0 399 316 7 15 chr13 5929972 5930108 -95943061 - MIR SINE MIR -72 190 56 1559 150 8 26 chr13 5930794 5931061 -95942108 + AluJb SINE Alu 39 300 -12 2043 110 3 23 chr13 5931217 5931517 -95941652 + AluSg SINE Alu 1 294 -16 32 0 0 0 chr13 5931518 5931550 -95941619 + AT_rich Low_complexity Low_complexity 1 32 0 5128 159 69 33 chr13 5932041 5933435 -95939734 - L1MB2 LINE L1 -1 6170 4693 614 286 71 96 chr13 5933741 5933848 -95939321 - L1ME4a LINE L1 -74 6047 5939 2368 87 0 3 chr13 5933848 5934146 -95939023 - AluSq SINE Alu -16 297 1 614 286 71 96 chr13 5934146 5934418 -95938751 - L1ME4a LINE L1 -182 5939 5662 2566 56 0 0 chr13 5934418 5934722 -95938447 - AluY SINE Alu -7 304 1 614 286 71 96 chr13 5934722 5935005 -95938164 - L1ME4a LINE L1 -459 5662 5380 25 0 0 0 chr13 5935006 5935031 -95938138 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr13 5935282 5935318 -95937851 + (TG)n Simple_repeat Simple_repeat 1 36 0 216 158 0 0 chr13 5937862 5937900 -95935269 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 290 304 39 10 chr13 5938689 5938791 -95934378 + MIR SINE MIR 38 142 -120 2021 153 3 13 chr13 5939117 5939430 -95933739 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr13 5940217 5940246 -95932923 + AT_rich Low_complexity Low_complexity 1 29 0 1502 163 98 14 chr13 5942207 5942483 -95930686 - AluJb SINE Alu -13 299 1 1689 224 26 5 chr13 5942713 5943142 -95930027 + L1 LINE L1 4899 5336 -810 219 253 23 23 chr13 5943959 5944046 -95929123 + CT-rich Low_complexity Low_complexity 5 91 0 355 245 67 92 chr13 5944831 5945414 -95927755 + HSREP522 Satellite telomeric 1 568 -87 233 219 256 0 chr13 5946812 5946894 -95926275 - MIR SINE MIR -88 174 72 823 256 81 42 chr13 5947100 5947459 -95925710 + L1ME LINE L1 5420 5792 -329 243 343 56 9 chr13 5948720 5948828 -95924341 - L2 LINE L2 -43 3229 3117 917 177 29 34 chr13 5948843 5949018 -95924151 + FAM SINE Alu 1 174 -11 1186 220 59 54 chr13 5949018 5949409 -95923760 - MLT2C2 LTR ERVL -71 393 1 363 191 143 38 chr13 5949501 5949606 -95923563 + L1MC1 LINE L1 6092 6207 -126 232 211 0 35 chr13 5950041 5950098 -95923071 - THE1C LTR MaLR 0 428 374 1949 78 67 11 chr13 5950098 5950387 -95922782 - AluY SINE Alu 0 304 1 1438 111 136 76 chr13 5950387 5950550 -95922619 - THE1C LTR MaLR -40 335 183 1943 157 0 3 chr13 5950550 5950844 -95922325 - AluSx SINE Alu -19 293 1 1438 111 136 76 chr13 5950844 5950996 -95922173 - THE1C LTR MaLR -192 183 1 869 194 62 44 chr13 5951162 5951389 -95921780 - L1MC1 LINE L1 -25 6308 6078 193 327 84 28 chr13 5951613 5951720 -95921449 + L2 LINE L2 3146 3258 -14 1982 183 127 44 chr13 5953521 5954001 -95919168 - MLT2B1 LTR ERVL 0 520 1 261 343 135 6 chr13 5954326 5954504 -95918665 - L2 LINE L2 -862 2452 2252 476 324 143 5 chr13 5955074 5955284 -95917885 + L3 LINE CR1 401 639 -938 531 152 9 38 chr13 5956897 5957002 -95916167 - L1MB3 LINE L1 -7 6176 6075 1736 83 5 0 chr13 5957489 5957707 -95915462 + AluSq SINE Alu 1 219 -94 740 125 0 0 chr13 5957708 5957831 -95915338 + AluSg/x SINE Alu 189 311 0 2090 141 0 0 chr13 5957891 5958181 -95914988 + AluSx SINE Alu 1 290 -22 278 255 255 13 chr13 5960433 5960586 -95912583 + MIR SINE MIR 59 248 -14 3367 208 72 45 chr13 5960921 5961467 -95911702 + L1ME2 LINE L1 4916 5446 -718 1925 140 3 38 chr13 5961467 5961781 -95911388 - AluJb SINE Alu -3 309 7 3367 208 72 45 chr13 5961781 5962425 -95910744 + L1ME2 LINE L1 5446 6155 -9 1128 124 75 0 chr13 5963708 5963894 -95909275 + LTR9B LTR ERV1 445 644 0 1038 47 16 0 chr13 5963936 5964063 -95909106 + HUERS-P3b LTR ERV1 2958 3086 -2131 457 102 0 0 chr13 5964061 5964120 -95909049 + HUERS-P3b LTR ERV1 6086 6144 -1274 * 1253 142 10 0 chr13 5964118 5964315 -95908854 + HUERS-P3b LTR ERV1 8720 8918 -1 3413 119 35 16 chr13 5964315 5964862 -95908307 + LTR9B LTR ERV1 1 557 -87 386 273 284 10 chr13 5966274 5966468 -95906701 - MIR SINE MIR -14 248 2 1491 111 79 14 chr13 5967702 5967918 -95905251 - MER30 DNA MER1_type 0 230 1 22 0 0 0 chr13 5967918 5967940 -95905229 + AT_rich Low_complexity Low_complexity 1 22 0 1717 175 7 13 chr13 5967945 5968248 -95904921 - AluJb SINE Alu -11 301 1 648 260 68 17 chr13 5968274 5968451 -95904718 + MER5A DNA MER1_type 1 186 -3 217 250 94 122 chr13 5969285 5969465 -95903704 - L2 LINE L2 -2 3270 3096 275 157 131 16 chr13 5969528 5969689 -95903480 + MER20 DNA MER1_type 1 219 0 242 232 29 0 chr13 5969931 5970000 -95903169 + LTR67 LTR ERVL 484 554 -3 5151 111 9 5 chr13 5970590 5971328 -95901841 + L1PA13 LINE L1 5423 6163 0 674 159 0 66 chr13 5972330 5972481 -95900688 + L1MB4 LINE L1 6039 6179 -1 246 289 46 30 chr13 5973966 5974128 -95899041 + MIR SINE MIR 36 252 -10 1914 134 0 7 chr13 5975137 5975441 -95897728 + AluSx SINE Alu 1 302 0 1063 224 8 4 chr13 5975507 5975752 -95897417 - AluSq SINE Alu -14 299 54 3116 230 109 52 chr13 5976415 5977567 -95895602 + L2 LINE L2 1175 2406 -908 1441 153 145 0 chr13 5977567 5977822 -95895347 - AluJo SINE Alu -20 292 1 3116 230 109 52 chr13 5977822 5977930 -95895239 + L2 LINE L2 2406 2506 -808 2000 246 135 20 chr13 5977972 5978704 -95894465 + L1ME3 LINE L1 5345 6160 -2 289 262 83 48 chr13 5978718 5978863 -95894306 - L2 LINE L2 -10 3303 3154 345 308 45 32 chr13 5979043 5979199 -95893970 - L2 LINE L2 -483 2831 2674 23 0 0 0 chr13 5979501 5979524 -95893645 + AT_rich Low_complexity Low_complexity 1 23 0 1256 206 4 24 chr13 5980909 5981157 -95892012 + AluJb SINE Alu 38 280 -32 197 178 22 0 chr13 5981214 5981259 -95891910 + (TA)n Simple_repeat Simple_repeat 2 47 0 2017 138 7 0 chr13 5981301 5981605 -95891564 + AluSx SINE Alu 1 306 -6 184 311 87 55 chr13 5982411 5982700 -95890469 + L2 LINE L2 2196 2493 -821 428 242 30 20 chr13 5983149 5983248 -95889921 + L2 LINE L2 3194 3293 -20 2617 155 29 9 chr13 5983694 5984113 -95889056 + MSTA LTR MaLR 2 428 0 2153 111 9 29 chr13 5984156 5984472 -95888697 - AluSx SINE Alu 0 312 3 2398 72 3 0 chr13 5984486 5984790 -95888379 - AluY SINE Alu -6 305 1 399 284 0 0 chr13 5985988 5986083 -95887086 - MER103 DNA DNA -52 114 20 1057 227 95 122 chr13 5986803 5987429 -95885740 - L1ME3A LINE L1 -205 5965 5334 1972 134 25 0 chr13 5987457 5987734 -95885435 + AluSx SINE Alu 1 284 -28 2421 145 6 6 chr13 5987836 5988201 -95884968 + MER47A DNA MER2_type 2 366 0 2303 110 0 7 chr13 5988246 5988556 -95884613 + AluSx SINE Alu 1 308 -4 2117 127 0 0 chr13 5989633 5989933 -95883236 - AluSg SINE Alu -10 300 1 1041 150 0 24 chr13 5989935 5990102 -95883067 - AluSg/x SINE Alu -16 294 132 631 209 32 73 chr13 5990164 5990384 -95882785 - L2 LINE L2 0 3313 3103 294 337 0 12 chr13 5991362 5991445 -95881724 + L3 LINE CR1 1387 1468 -109 304 271 22 66 chr13 5991666 5991847 -95881322 + L2 LINE L2 2704 2876 -438 4553 183 87 13 chr13 5991971 5992991 -95880178 - L1MC3 LINE L1 0 7785 6690 2145 112 14 0 chr13 5994837 5995132 -95878037 + AluSx SINE Alu 1 299 -13 200 306 14 56 chr13 5995191 5995263 -95877906 - MIR SINE MIR -145 117 49 356 300 121 14 chr13 5996806 5997029 -95876140 + MIR SINE MIR 1 247 -15 457 303 0 16 chr13 5997106 5997228 -95875941 + L2 LINE L2 3194 3313 0 187 176 0 0 chr13 5997234 5997268 -95875901 + L2 LINE L2 3280 3313 0 2272 109 3 6 chr13 5998035 5998347 -95874822 - AluSq SINE Alu -2 311 1 3083 109 78 52 chr13 5998804 5999319 -95873850 - MER1A DNA MER1_type -1 528 1 292 319 83 35 chr13 6000696 6000840 -95872329 + MIR3 SINE MIR 1 151 -57 1538 206 99 0 chr13 6002279 6002634 -95870535 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 6002795 6002817 -95870352 + AT_rich Low_complexity Low_complexity 1 22 0 2161 131 0 6 chr13 6003735 6004048 -95869121 + AluSx SINE Alu 1 311 -1 1397 202 24 14 chr13 6006461 6006748 -95866421 - AluJo SINE Alu -22 290 1 384 187 121 22 chr13 6006854 6006945 -95866224 + Tigger2 DNA MER2_type 1 100 -2618 829 212 0 50 chr13 6006947 6007126 -95866043 - MER8 DNA MER2_type -62 177 8 1500 175 93 10 chr13 6007168 6007459 -95865710 + MER44D DNA MER2_type 20 604 -5 195 69 0 0 chr13 6008461 6008490 -95864679 + (TC)n Simple_repeat Simple_repeat 1 29 0 1789 234 84 44 chr13 6008645 6009214 -95863955 + MLT1E LTR MaLR 1 592 -1 2442 78 0 7 chr13 6009347 6009643 -95863526 - AluSg SINE Alu -16 294 1 28 29 0 0 chr13 6009648 6009683 -95863486 + AT_rich Low_complexity Low_complexity 1 35 0 567 236 102 77 chr13 6009735 6010048 -95863121 + MLT1J LTR MaLR 3 323 -188 1575 158 12 71 chr13 6010325 6010647 -95862522 + AluJb SINE Alu 1 303 -9 1659 156 35 38 chr13 6011654 6012024 -95861145 + MSTC LTR MaLR 18 426 -2 494 271 98 33 chr13 6012091 6012305 -95860864 + L2 LINE L2 2827 3054 -259 351 0 0 0 chr13 6013422 6013461 -95859708 + (CA)n Simple_repeat Simple_repeat 2 40 0 494 138 0 0 chr13 6014772 6014859 -95858310 - L1MB7 LINE L1 -19 6165 6079 4539 185 67 21 chr13 6014869 6016675 -95856494 - L1MB7 LINE L1 -21 6163 4441 2255 121 0 13 chr13 6016675 6016989 -95856180 - AluSq SINE Alu -3 310 1 4539 185 67 21 chr13 6016989 6017000 -95856169 - L1MB7 LINE L1 -1743 4441 4432 423 0 0 0 chr13 6017000 6017047 -95856122 + (TG)n Simple_repeat Simple_repeat 2 48 0 4539 185 67 21 chr13 6017047 6017294 -95855875 - L1MB7 LINE L1 -1752 4432 3999 204 67 0 0 chr13 6017601 6017631 -95855538 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 446 233 36 131 chr13 6018644 6018919 -95854250 - MER112 DNA MER1_type -11 249 1 359 174 47 12 chr13 6019394 6019480 -95853689 + L1MD3 LINE L1 7829 7917 -78 22 0 0 0 chr13 6020214 6020236 -95852933 + AT_rich Low_complexity Low_complexity 1 22 0 324 267 158 17 chr13 6020619 6020739 -95852430 - MIR SINE MIR 0 262 126 380 341 82 27 chr13 6021021 6021352 -95851817 + L1 LINE L1 4081 4429 -1717 40546 55 4 6 chr13 6021363 6027531 -95845638 + L1PA5 LINE L1 1 6154 0 1671 177 0 30 chr13 6027839 6028138 -95845031 + AluJb SINE Alu 10 299 -13 887 180 34 26 chr13 6029077 6029299 -95843870 - MLT1A1 LTR MaLR -2 430 162 287 25 25 0 chr13 6029299 6029339 -95843830 + (GA)n Simple_repeat Simple_repeat 1 41 0 421 160 21 11 chr13 6029366 6029460 -95843709 - MLT1A1 LTR MaLR -213 152 58 306 269 97 21 chr13 6029939 6030084 -95843085 - L1ME4a LINE L1 0 6121 5966 726 300 83 24 chr13 6030193 6030566 -95842603 - MLT1I LTR MaLR -14 395 1 1360 142 15 0 chr13 6030804 6031001 -95842168 - AluJo SINE Alu -112 200 1 5412 247 113 38 chr13 6031790 6032273 -95840896 + L2 LINE L2 201 646 -2668 1630 206 100 30 chr13 6032273 6032744 -95840425 + MLT1D LTR MaLR 1 504 -1 5412 247 113 38 chr13 6032744 6034296 -95838873 + L2 LINE L2 646 2408 -906 1454 153 145 0 chr13 6034296 6034551 -95838618 - AluJo SINE Alu -20 292 1 5412 247 113 38 chr13 6034551 6034659 -95838510 + L2 LINE L2 2408 2506 -808 1683 246 135 20 chr13 6034701 6035433 -95837736 + L1ME3 LINE L1 5345 6160 -2 302 262 83 48 chr13 6035447 6035592 -95837577 - L2 LINE L2 -10 3303 3154 343 308 45 32 chr13 6035772 6035928 -95837241 - L2 LINE L2 -483 2831 2674 23 0 0 0 chr13 6036230 6036253 -95836916 + AT_rich Low_complexity Low_complexity 1 23 0 1287 206 4 24 chr13 6037638 6037886 -95835283 + AluJb SINE Alu 38 280 -32 197 178 22 0 chr13 6037943 6037988 -95835181 + (TA)n Simple_repeat Simple_repeat 2 47 0 2026 138 7 0 chr13 6038030 6038334 -95834835 + AluSx SINE Alu 1 306 -6 180 311 87 55 chr13 6039141 6039430 -95833739 + L2 LINE L2 2196 2493 -821 431 242 30 20 chr13 6039879 6039978 -95833191 + L2 LINE L2 3194 3293 -20 2421 155 29 9 chr13 6040424 6040843 -95832326 + MSTA LTR MaLR 2 428 0 2160 111 9 29 chr13 6040886 6041202 -95831967 - AluSx SINE Alu 0 312 3 2375 72 3 0 chr13 6041216 6041520 -95831649 - AluY SINE Alu -6 305 1 358 284 0 0 chr13 6042718 6042813 -95830356 - MER103 DNA DNA -52 114 20 846 229 86 99 chr13 6043549 6044152 -95829017 - L1ME4a LINE L1 -219 5951 5350 1977 134 25 0 chr13 6044187 6044464 -95828705 + AluSx SINE Alu 1 284 -28 2235 145 6 6 chr13 6044566 6044931 -95828238 + MER47A DNA MER2_type 2 366 0 2052 113 7 23 chr13 6044976 6045307 -95827862 + AluSx SINE Alu 1 312 0 356 278 106 39 chr13 6045307 6045638 -95827531 - L1ME4a LINE L1 -1088 5058 4706 768 318 10 26 chr13 6046776 6047078 -95826091 + MLT1K LTR MaLR 288 584 -4 281 308 101 40 chr13 6047184 6047382 -95825787 + MIR SINE MIR 41 250 -12 224 296 0 14 chr13 6047420 6047491 -95825678 + MIR SINE MIR 187 256 -6 2304 67 27 3 chr13 6048290 6048587 -95824582 + AluY SINE Alu 1 304 -7 441 0 0 0 chr13 6048611 6048660 -95824509 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr13 6049942 6049970 -95823199 + AT_rich Low_complexity Low_complexity 1 28 0 2502 56 0 3 chr13 6049990 6050293 -95822876 - AluY SINE Alu -9 302 1 251 252 26 126 chr13 6051176 6051245 -95821924 + MIR SINE MIR 82 130 -132 2334 96 3 0 chr13 6051245 6051537 -95821632 - AluSg SINE Alu -17 293 1 251 252 26 126 chr13 6051537 6051618 -95821551 + MIR SINE MIR 130 217 -45 21 36 0 0 chr13 6051940 6051968 -95821201 + AT_rich Low_complexity Low_complexity 1 28 0 1017 215 94 97 chr13 6053180 6053928 -95819241 + LTR8A LTR ERV1 1 727 0 299 285 138 79 chr13 6053930 6054299 -95818870 - L2 LINE L2 0 3272 2882 938 187 20 5 chr13 6054370 6054573 -95818596 + MER72 LTR ERV1 1 206 -516 543 189 0 19 chr13 6054599 6054705 -95818464 + L1MD2 LINE L1 6243 6346 -13 709 169 4 9 chr13 6055193 6055444 -95817725 + MER2 DNA MER2_type 1 284 -61 21 0 0 0 chr13 6055475 6055496 -95817673 + AT_rich Low_complexity Low_complexity 1 21 0 806 175 7 28 chr13 6055515 6055658 -95817511 - FRAM SINE Alu -36 140 1 453 169 0 0 chr13 6055658 6055729 -95817440 + MER2 DNA MER2_type 275 345 0 2436 61 0 17 chr13 6056158 6056455 -95816714 - AluY SINE Alu -19 292 1 484 241 71 71 chr13 6056771 6057000 -95816169 + MIR SINE MIR 25 262 0 1123 149 44 6 chr13 6057212 6057393 -95815776 - AluSg/x SINE Alu -14 296 109 956 149 51 17 chr13 6057493 6057668 -95815501 - AluSx SINE Alu -129 183 3 21 36 0 0 chr13 6057671 6057699 -95815470 + AT_rich Low_complexity Low_complexity 1 28 0 963 289 61 42 chr13 6058057 6058646 -95814523 - L1MCa LINE L1 -4865 2076 1477 734 275 143 13 chr13 6058818 6059203 -95813966 - L1MCa LINE L1 -5963 460 26 195 42 0 0 chr13 6059271 6059295 -95813874 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 641 203 165 21 chr13 6059420 6059657 -95813512 + MER31A LTR ERV1 215 485 0 22 0 0 0 chr13 6059956 6059978 -95813191 + AT_rich Low_complexity Low_complexity 1 22 0 2064 136 27 54 chr13 6060154 6060196 -95812973 - MER57A LTR ERV1 -1 402 360 1916 125 0 30 chr13 6060196 6060492 -95812677 + AluSx SINE Alu 1 287 -25 258 32 0 0 chr13 6060499 6060530 -95812639 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2064 136 27 54 chr13 6060530 6060885 -95812284 - MER57A LTR ERV1 -49 354 8 538 230 59 54 chr13 6060937 6061159 -95812010 + MER46C DNA MER2_type 3 225 -113 743 182 97 32 chr13 6061197 6061622 -95811547 + LTR54B LTR ERV1 2 490 -8 266 262 36 12 chr13 6061629 6061713 -95811456 + MER46C DNA MER2_type 252 337 -1 21 0 0 0 chr13 6061760 6061781 -95811388 + AT_rich Low_complexity Low_complexity 1 21 0 2281 117 0 3 chr13 6061788 6062095 -95811074 + AluSx SINE Alu 1 306 -6 269 220 110 9 chr13 6062372 6062481 -95810688 - MER103 DNA DNA -45 121 2 1083 173 15 10 chr13 6063703 6063905 -95809264 + MER2 DNA MER2_type 8 210 -135 660 83 0 0 chr13 6064951 6065035 -95808134 - AluSg/x SINE Alu -16 294 211 262 275 266 9 chr13 6065035 6065144 -95808025 + MER5A DNA MER1_type 49 185 -4 191 324 15 0 chr13 6065088 6065156 -95808013 - MER5A DNA MER1_type -114 75 7 * 243 288 45 0 chr13 6065342 6065408 -95807761 + MIR SINE MIR 124 192 -70 267 216 13 150 chr13 6065509 6065608 -95807561 - MER94 DNA DNA -2 132 60 1603 196 4 0 chr13 6065608 6065889 -95807280 + AluJo SINE Alu 1 282 -30 267 216 13 150 chr13 6065889 6065942 -95807227 - MER94 DNA DNA -74 60 1 208 191 48 0 chr13 6065943 6065985 -95807184 - MIR SINE MIR -2 260 217 337 280 115 37 chr13 6068103 6068670 -95804499 + L1ME2 LINE L1 2322 2932 -3214 1718 139 57 36 chr13 6068903 6069235 -95803934 - MER2 DNA MER2_type 0 345 7 1960 273 76 56 chr13 6069243 6069759 -95803410 + L1ME2 LINE L1 3221 3725 -2421 1753 130 4 0 chr13 6069759 6070012 -95803157 + AluSx SINE Alu 49 302 -10 1960 273 76 56 chr13 6070012 6071288 -95801881 + L1ME2 LINE L1 3725 5049 -1097 283 153 15 4 chr13 6071294 6071497 -95801672 + AluJo SINE Alu 1 295 -6 751 193 0 15 chr13 6071716 6071851 -95801318 + FLAM_A SINE Alu 1 133 0 645 244 141 53 chr13 6071919 6072410 -95800759 + L1ME2 LINE L1 5406 5938 -224 369 302 173 56 chr13 6072597 6072938 -95800231 - L3 LINE CR1 -118 1459 1079 1488 210 89 23 chr13 6073462 6073891 -95799278 - MSTB2 LTR MaLR 0 457 1 2422 123 40 38 chr13 6074057 6074480 -95798689 + MSTC LTR MaLR 1 424 -4 655 287 171 6 chr13 6074682 6075016 -95798153 - L3 LINE CR1 -523 1054 666 30 0 0 0 chr13 6075290 6075320 -95797849 + AT_rich Low_complexity Low_complexity 1 30 0 219 354 23 31 chr13 6076510 6076640 -95796529 + L2 LINE L2 3180 3308 -5 2138 116 14 0 chr13 6077077 6077371 -95795798 - AluSx SINE Alu -9 303 6 317 172 62 0 chr13 6077990 6078054 -95795115 + MIR SINE MIR 123 190 -72 21 0 0 0 chr13 6079988 6080009 -95793160 + AT_rich Low_complexity Low_complexity 1 21 0 215 222 0 79 chr13 6080127 6080190 -95792979 - MIR SINE MIR -7 255 198 1898 155 0 13 chr13 6080200 6080503 -95792666 - AluJb SINE Alu -13 299 1 548 282 74 28 chr13 6080576 6080792 -95792377 - MIR SINE MIR -25 237 12 195 339 89 40 chr13 6080819 6080943 -95792226 + MIR3 SINE MIR 14 143 -65 398 276 125 0 chr13 6081318 6081470 -95791699 + MIR SINE MIR 92 262 0 462 254 8 16 chr13 6082373 6082495 -95790674 - L2 LINE L2 0 3313 3193 320 125 18 0 chr13 6084320 6084376 -95788793 - LTR54 LTR ERV1 -38 472 416 25 0 0 0 chr13 6084389 6084414 -95788755 + AT_rich Low_complexity Low_complexity 1 25 0 180 236 83 42 chr13 6084698 6084770 -95788399 + L2 LINE L2 3198 3272 0 2400 73 7 7 chr13 6084873 6085175 -95787994 + AluSg SINE Alu 1 302 -8 268 302 95 28 chr13 6085709 6085961 -95787208 - L2 LINE L2 -624 2690 2422 1018 219 73 0 chr13 6086376 6086623 -95786546 + L1MCa LINE L1 19 283 -6143 509 247 84 6 chr13 6087415 6087581 -95785588 - MER97a DNA MER1_type? -715 179 1 422 252 53 27 chr13 6087669 6087852 -95785317 - L1ME LINE L1 -464 5657 5473 800 110 31 16 chr13 6087960 6088087 -95785082 - AluSg/x SINE Alu 0 312 184 191 255 0 20 chr13 6088375 6088426 -95784743 - L2 LINE L2 -580 2734 2685 1683 114 82 7 chr13 6088492 6088798 -95784371 - MER46B DNA MER2_type -1 235 32 243 0 0 0 chr13 6088879 6088906 -95784263 + (ATG)n Simple_repeat Simple_repeat 1 27 0 511 286 81 5 chr13 6088907 6089092 -95784077 - MIR SINE MIR -5 257 59 181 249 45 141 chr13 6089940 6090117 -95783052 - MIR SINE MIR -50 212 53 * 308 299 62 10 chr13 6090105 6090202 -95782967 + MIR SINE MIR 47 148 -114 234 325 0 0 chr13 6093520 6093600 -95779569 + L1MC4 LINE L1 7190 7269 -773 933 202 16 21 chr13 6093738 6093926 -95779243 - AluJo SINE Alu -7 305 119 381 255 35 80 chr13 6094004 6094467 -95778702 + L1MC5 LINE L1 7333 7774 -187 6858 133 44 15 chr13 6094469 6095613 -95777556 + Tigger3b DNA MER2_type 2 1184 -1844 2252 102 0 23 chr13 6095613 6095916 -95777253 - AluSg SINE Alu -14 296 1 6858 133 44 15 chr13 6095916 6095966 -95777203 + Tigger3b DNA MER2_type 1184 1231 0 253 323 0 0 chr13 6095980 6096045 -95777124 + polypurine Low_complexity Low_complexity 2 66 0 2254 125 0 0 chr13 6096278 6096589 -95776580 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr13 6097899 6097930 -95775239 + AT_rich Low_complexity Low_complexity 1 31 0 2275 101 0 0 chr13 6098102 6098390 -95774779 - AluSx SINE Alu -24 288 1 21 82 0 0 chr13 6098495 6098544 -95774625 + AT_rich Low_complexity Low_complexity 1 49 0 491 245 19 57 chr13 6098556 6098715 -95774454 - L1ME1 LINE L1 -1 6183 6031 183 343 49 10 chr13 6099289 6099391 -95773778 - L2 LINE L2 -221 3092 2987 189 226 38 0 chr13 6099474 6099527 -95773642 - L2 LINE L2 -620 2694 2640 27 29 0 0 chr13 6099634 6099668 -95773501 + AT_rich Low_complexity Low_complexity 1 34 0 2194 133 0 10 chr13 6101822 6102124 -95771045 + AluSx SINE Alu 1 299 -13 2034 132 10 10 chr13 6104046 6104342 -95768827 - AluSx SINE Alu -16 296 1 1219 208 148 0 chr13 6104491 6104809 -95768360 - MER47A DNA MER2_type 0 366 2 789 264 74 4 chr13 6105074 6105305 -95767864 - MIR SINE MIR -4 258 12 2747 89 14 5 chr13 6106949 6107319 -95765850 + THE1C LTR MaLR 3 375 0 1986 138 10 0 chr13 6107923 6108213 -95764956 - AluSx SINE Alu -19 293 1 1029 296 101 41 chr13 6108329 6108965 -95764204 + L2 LINE L2 2085 2758 -556 9424 205 25 18 chr13 6108973 6110124 -95763045 - L1MB4 LINE L1 0 6180 5038 1660 176 47 4 chr13 6110124 6110402 -95762767 - AluJo SINE Alu -22 290 1 9424 205 25 18 chr13 6110402 6112742 -95760427 - L1MB4 LINE L1 -1142 5038 2669 2308 157 38 8 chr13 6112995 6113472 -95759697 + L1MB5 LINE L1 5684 6174 0 189 0 0 0 chr13 6114552 6114573 -95758596 + (T)n Simple_repeat Simple_repeat 1 21 0 211 378 12 24 chr13 6114624 6114706 -95758463 + MIR SINE MIR 20 100 -162 297 278 156 0 chr13 6115548 6115638 -95757531 - L2 LINE L2 0 3313 3210 279 253 153 63 chr13 6115654 6116009 -95757160 - MLT1J2 LTR MaLR -3 488 125 448 251 60 51 chr13 6116097 6116512 -95756657 - L2 LINE L2 -125 3188 2230 218 350 87 0 chr13 6117428 6117531 -95755638 + MIR SINE MIR 35 146 -62 293 47 23 0 chr13 6118460 6118503 -95754666 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 1333 179 22 65 chr13 6120159 6120407 -95752762 + MER33 DNA MER1_type 2 234 -2351 724 191 125 0 chr13 6120407 6120559 -95752610 - FAM SINE Alu 0 175 5 1333 179 22 65 chr13 6120559 6120634 -95752535 + MER33 DNA MER1_type 234 311 -13 226 260 213 7 chr13 6120966 6121116 -95752053 - MIR SINE MIR -80 182 2 2436 141 47 30 chr13 6122062 6122212 -95750957 - Tigger2a DNA MER2_type -2274 434 288 2298 99 3 0 chr13 6122212 6122515 -95750654 - AluSg SINE Alu -6 304 1 2436 141 47 30 chr13 6122515 6122791 -95750378 - Tigger2a DNA MER2_type -2420 288 1 21 71 0 0 chr13 6123559 6123601 -95749568 + AT_rich Low_complexity Low_complexity 1 42 0 13645 166 23 3 chr13 6123758 6127070 -95746099 - L1PA14 LINE L1 -4 6157 2790 1420 175 72 0 chr13 6127437 6127700 -95745469 - MER7A DNA MER2_type -65 281 2 4408 206 70 38 chr13 6128188 6129387 -95743782 - L1MC4 LINE L1 0 8042 6806 237 83 0 0 chr13 6129762 6129798 -95743371 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 69 0 0 chr13 6129832 6129861 -95743308 + (TA)n Simple_repeat Simple_repeat 2 30 0 1413 161 4 11 chr13 6130263 6130524 -95742645 - L1MB3 LINE L1 -8 6175 5917 23 33 0 0 chr13 6132149 6132179 -95740990 + AT_rich Low_complexity Low_complexity 1 30 0 693 143 0 24 chr13 6132896 6133022 -95740147 - FRAM SINE Alu -5 171 49 774 93 0 70 chr13 6134458 6134587 -95738582 + FRAM SINE Alu 43 162 -14 493 168 8 130 chr13 6138911 6139042 -95734127 + FLAM_A SINE Alu 8 122 -20 4450 117 92 47 chr13 6139705 6140492 -95732677 - LTR12 LTR ERV1 0 826 5 1964 199 95 28 chr13 6140507 6141074 -95732095 - pTR5 LTR ERV1 -1093 1345 741 29 0 0 0 chr13 6141182 6141211 -95731958 + AT_rich Low_complexity Low_complexity 1 29 0 1314 113 128 93 chr13 6141211 6141468 -95731701 - AluSx SINE Alu -23 289 24 1483 185 14 20 chr13 6142369 6142661 -95730508 + AluJo SINE Alu 1 290 -22 428 232 143 76 chr13 6144078 6144483 -95728686 + MER4C LTR ERV1 1 608 -91 4049 96 9 5 chr13 6144483 6145035 -95728134 + MER41A LTR ERV1 1 554 0 3954 141 61 21 chr13 6145035 6145733 -95727436 + MER41A-int LTR ERV1 1 633 -5313 * 10627 107 35 21 chr13 6145705 6148765 -95724404 + MER41A-int LTR ERV1 2606 5944 -2 4053 112 4 0 chr13 6148765 6149317 -95723852 + MER41A LTR ERV1 1 554 0 298 160 85 53 chr13 6149317 6149411 -95723758 + MER4C LTR ERV1 367 463 -2 6373 138 41 65 chr13 6149739 6150081 -95723088 + Tigger3b DNA MER2_type 1 350 -2678 2392 91 0 0 chr13 6150081 6150378 -95722791 + AluSx SINE Alu 2 298 -14 6373 138 41 65 chr13 6150378 6150783 -95722386 + Tigger3b DNA MER2_type 350 763 -2265 2390 92 0 0 chr13 6150783 6151077 -95722092 + AluY SINE Alu 1 294 -17 6373 138 41 65 chr13 6151077 6151584 -95721585 + Tigger3b DNA MER2_type 763 1226 -5 237 300 100 15 chr13 6151648 6151778 -95721391 - MIR SINE MIR -56 206 66 180 319 0 14 chr13 6151812 6151881 -95721288 - MIR3 SINE MIR -129 79 12 2201 159 54 7 chr13 6152148 6152556 -95720613 + L1MB3 LINE L1 5749 6175 -8 229 145 15 0 chr13 6152680 6152722 -95720447 - MIR3 SINE MIR -54 154 111 2142 121 0 0 chr13 6153096 6153376 -95719793 + AluSx SINE Alu 1 280 -32 287 147 15 147 chr13 6153836 6153904 -95719265 + AluS SINE Alu 2 60 -248 421 202 101 8 chr13 6154130 6154249 -95718920 + L1MA10 LINE L1 6205 6334 0 2495 61 0 0 chr13 6154405 6154700 -95718469 + AluY SINE Alu 1 295 -16 387 263 94 58 chr13 6154703 6155227 -95717942 + L1MEc LINE L1 2049 2560 -3655 3315 157 52 7 chr13 6155246 6155846 -95717323 + LTR24C LTR ERV1 1 627 -8 313 290 109 11 chr13 6155925 6156108 -95717061 + L1M4 LINE L1 4577 4777 -1369 3932 91 28 2 chr13 6156110 6156650 -95716519 - MER41A LTR ERV1 0 554 1 761 259 20 51 chr13 6156750 6157105 -95716064 + L1M4 LINE L1 4918 5261 -885 183 80 0 0 chr13 6157328 6157353 -95715816 + (TA)n Simple_repeat Simple_repeat 1 25 0 2650 18 0 0 chr13 6157352 6157660 -95715509 - AluY SINE Alu 0 308 1 354 231 88 27 chr13 6158721 6158868 -95714301 + MER45A DNA AcHobo 3 158 -20 1167 144 0 21 chr13 6159828 6160016 -95713153 + Tigger1 DNA MER2_type 22 205 -2213 1252 169 5 5 chr13 6160026 6160239 -95712930 - AluJo SINE Alu -15 297 85 260 250 0 0 chr13 6160239 6160287 -95712882 - AluJb SINE Alu -52 250 203 * 13460 116 54 30 chr13 6160260 6161159 -95712010 + Tigger1 DNA MER2_type 165 1041 -1377 2381 77 3 7 chr13 6161159 6161459 -95711710 - AluSc SINE Alu -10 299 1 13460 116 54 30 chr13 6161459 6162418 -95710751 + Tigger1 DNA MER2_type 1041 2087 -331 2342 92 0 7 chr13 6162418 6162713 -95710456 - AluSx SINE Alu -19 293 1 13460 116 54 30 chr13 6162713 6163054 -95710115 + Tigger1 DNA MER2_type 2087 2418 0 184 366 108 48 chr13 6163665 6163998 -95709171 - L3b LINE CR1 -85 1498 1146 240 262 48 48 chr13 6165321 6165405 -95707764 - L2 LINE L2 -1 3271 3188 306 247 37 0 chr13 6165669 6165750 -95707419 + MIR SINE MIR 69 152 -110 652 210 120 30 chr13 6165754 6165921 -95707248 + AluJo SINE Alu 2 183 -129 204 320 0 13 chr13 6165925 6166000 -95707169 + MIR SINE MIR 189 262 0 459 295 29 6 chr13 6166706 6166879 -95706290 - L1MB3 LINE L1 0 6183 6007 506 97 138 0 chr13 6166963 6167086 -95706083 - L1PA8 LINE L1 -1 6153 5991 1221 175 185 9 chr13 6167129 6167412 -95705757 - L1MA5A LINE L1 -10 6287 5943 364 289 75 23 chr13 6169240 6169413 -95703756 - MIR SINE MIR -79 183 2 977 221 35 0 chr13 6169598 6169797 -95703372 + MER63A DNA MER1_type 5 210 0 750 259 4 98 chr13 6169824 6169889 -95703280 + MIR SINE MIR 22 92 -170 1882 110 8 4 chr13 6169889 6170153 -95703016 - AluSx SINE Alu -27 285 21 750 259 4 98 chr13 6170153 6170342 -95702827 + MIR SINE MIR 92 252 -10 184 135 19 19 chr13 6170450 6170502 -95702667 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 799 276 103 49 chr13 6170613 6170799 -95702370 + L2 LINE L2 2921 3095 -218 1534 180 48 45 chr13 6170799 6171110 -95702059 + AluJo SINE Alu 1 312 0 799 276 103 49 chr13 6171110 6171292 -95701877 + L2 LINE L2 3095 3309 -4 2271 92 3 0 chr13 6171496 6171778 -95701391 - AluSp SINE Alu -25 288 6 2409 268 79 56 chr13 6171916 6172678 -95700491 - MLT-int LTR MaLR -376 1359 581 192 40 0 0 chr13 6172693 6172718 -95700451 + (CA)n Simple_repeat Simple_repeat 2 26 0 263 253 0 63 chr13 6172726 6172821 -95700348 + L1MC4 LINE L1 6615 6703 -1339 208 218 0 73 chr13 6172821 6172876 -95700293 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 242 140 0 105 chr13 6172880 6172937 -95700232 - L1MC4 LINE L1 -1340 6702 6652 244 276 46 11 chr13 6172959 6173046 -95700123 - L1MC4 LINE L1 -1339 6703 6614 516 225 0 0 chr13 6173047 6173176 -95699993 + (TA)n Simple_repeat Simple_repeat 2 130 0 1549 197 10 10 chr13 6174291 6174601 -95698568 + AluJo SINE Alu 1 310 -2 1647 137 27 57 chr13 6174604 6174904 -95698265 + AluSq SINE Alu 1 291 -22 4728 165 45 49 chr13 6174906 6175962 -95697207 + L1 LINE L1 3889 4940 -1206 198 191 0 0 chr13 6176065 6176107 -95697062 + GA-rich Low_complexity Low_complexity 4 45 0 1231 56 0 0 chr13 6176171 6176313 -95696856 + AluY SINE Alu 1 142 -169 180 0 0 0 chr13 6176316 6176336 -95696833 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 6176494 6176515 -95696654 + AT_rich Low_complexity Low_complexity 1 21 0 2292 125 0 0 chr13 6176737 6177049 -95696120 + AluSx SINE Alu 1 312 0 32 26 0 0 chr13 6177273 6177312 -95695857 + AT_rich Low_complexity Low_complexity 1 39 0 527 164 52 124 chr13 6178561 6178838 -95694331 - MER66A LTR ERV1 -174 354 163 44 84 0 0 chr13 6179047 6179154 -95694015 + AT_rich Low_complexity Low_complexity 1 107 0 1204 180 0 42 chr13 6179495 6179734 -95693435 + AluJo SINE Alu 84 312 0 463 70 14 0 chr13 6180555 6180626 -95692543 + AluSc SINE Alu 236 307 -2 250 240 0 0 chr13 6181657 6181707 -95691462 + MIR SINE MIR 13 62 -200 * 524 244 7 30 chr13 6181702 6181837 -95691332 + L2 LINE L2 3181 3312 -1 213 323 0 0 chr13 6181862 6181927 -95691242 + MIR SINE MIR 195 259 -3 231 350 65 24 chr13 6182305 6182428 -95690741 - L2 LINE L2 -185 3087 2960 230 347 45 40 chr13 6182617 6182793 -95690376 - L2 LINE L2 -456 2858 2682 185 0 40 0 chr13 6182794 6182819 -95690350 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 970 133 27 0 chr13 6183087 6183237 -95689932 - MER5A DNA MER1_type -35 154 1 2226 95 113 9 chr13 6185466 6185793 -95687376 + MER46B DNA MER2_type 1 236 0 2023 130 0 14 chr13 6186586 6186879 -95686290 + AluSx SINE Alu 11 299 -13 2235 111 0 3 chr13 6187799 6188097 -95685072 - AluSx SINE Alu -15 297 1 1659 268 180 23 chr13 6188585 6189825 -95683344 + L2 LINE L2 1891 3312 -1 211 281 67 11 chr13 6189948 6190037 -95683132 + MIR SINE MIR 118 211 -51 38 0 0 0 chr13 6190048 6190086 -95683083 + AT_rich Low_complexity Low_complexity 1 38 0 223 322 42 42 chr13 6190309 6190452 -95682717 - L2 LINE L2 -228 3044 2902 33 90 0 0 chr13 6192434 6192523 -95680646 + AT_rich Low_complexity Low_complexity 1 89 0 2335 105 0 0 chr13 6192650 6192955 -95680214 + AluSx SINE Alu 2 306 -6 822 167 43 0 chr13 6193020 6193158 -95680011 + FRAM SINE Alu 4 147 -29 619 83 12 12 chr13 6194307 6194391 -95678778 + AluS SINE Alu 2 85 -228 213 185 46 46 chr13 6195351 6195416 -95677753 + MIR SINE MIR 143 207 -55 321 212 156 56 chr13 6196176 6196302 -95676867 + MIR3 SINE MIR 69 207 -1 315 0 0 0 chr13 6196882 6196917 -95676252 + (CA)n Simple_repeat Simple_repeat 2 36 0 533 209 143 33 chr13 6197482 6197692 -95675477 - L1ME4a LINE L1 -82 6039 5807 304 316 53 0 chr13 6198009 6198123 -95675046 - MIR SINE MIR -34 228 109 304 224 0 126 chr13 6198230 6198404 -95674765 - L1 LINE L1 -773 5373 5222 23 33 0 0 chr13 6198545 6198575 -95674594 + AT_rich Low_complexity Low_complexity 1 30 0 293 285 71 52 chr13 6198588 6198956 -95674213 - L1 LINE L1 -1197 4949 4575 324 226 96 26 chr13 6199205 6199320 -95673849 + MER103 DNA DNA 43 165 -1 23 33 0 0 chr13 6199652 6199682 -95673487 + AT_rich Low_complexity Low_complexity 1 30 0 851 282 152 0 chr13 6200600 6200923 -95672246 - L2 LINE L2 -19 3294 2923 186 43 0 0 chr13 6201211 6201234 -95671935 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 1121 167 0 36 chr13 6201235 6201427 -95671742 - AluJb SINE Alu -5 307 123 247 326 70 0 chr13 6201450 6201536 -95671633 + MIR SINE MIR 21 112 -150 264 223 107 27 chr13 6203115 6203227 -95669942 - MIR SINE MIR -55 207 87 1292 104 6 0 chr13 6203776 6203959 -95669210 - AluY SINE Alu -3 308 125 1719 181 52 6 chr13 6205131 6205457 -95667712 + MER2 DNA MER2_type 2 342 -2 693 174 91 0 chr13 6206611 6206732 -95666437 + AluJ SINE Alu 2 133 -169 209 159 23 0 chr13 6206759 6206803 -95666366 + GA-rich Low_complexity Low_complexity 1 45 0 2087 88 63 0 chr13 6206817 6207102 -95666067 + AluSq SINE Alu 1 303 -10 982 169 7 0 chr13 6207102 6207256 -95665913 + AluJ SINE Alu 134 288 -24 200 337 48 12 chr13 6207299 6207382 -95665787 - L2 LINE L2 -5 3308 3223 21 0 0 0 chr13 6207791 6207812 -95665357 + AT_rich Low_complexity Low_complexity 1 21 0 2900 164 71 9 chr13 6207812 6208360 -95664809 - L1MB3 LINE L1 -1 6182 5601 235 239 11 68 chr13 6209026 6209114 -95664055 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 181 244 78 44 chr13 6209116 6209206 -95663963 - L2 LINE L2 -16 3256 3164 345 62 0 0 chr13 6209978 6210026 -95663143 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 6210054 6210083 -95663086 + AT_rich Low_complexity Low_complexity 1 29 0 423 231 52 23 chr13 6210302 6210513 -95662656 + Charlie7 DNA MER1_type 2317 2612 0 218 269 0 30 chr13 6210557 6210624 -95662545 + G-rich Low_complexity Low_complexity 4 68 0 783 244 168 43 chr13 6211765 6211995 -95661174 - MER58B DNA MER1_type -2079 341 63 1854 169 10 7 chr13 6211995 6212303 -95660866 + AluJo SINE Alu 1 309 -3 783 244 168 43 chr13 6212303 6212375 -95660794 - MER58B DNA MER1_type -2357 63 1 337 346 82 0 chr13 6212522 6212704 -95660465 - MIR SINE MIR -52 210 14 1865 178 0 0 chr13 6213094 6213392 -95659777 - AluJb SINE Alu -14 298 1 795 180 0 0 chr13 6213428 6213556 -95659613 - FLAM_C SINE Alu -3 130 3 441 115 58 16 chr13 6214922 6215011 -95658158 - L1PA8 LINE L1 0 6154 6067 876 122 0 15 chr13 6215156 6215287 -95657882 + FLAM_C SINE Alu 12 140 -3 204 97 0 0 chr13 6216175 6216206 -95656963 + (TA)n Simple_repeat Simple_repeat 1 31 0 285 316 85 17 chr13 6216251 6216428 -95656741 + MIR SINE MIR 74 262 0 382 344 78 9 chr13 6216658 6216876 -95656293 - MIR SINE MIR -10 252 20 24 0 0 0 chr13 6218598 6218622 -95654547 + GC_rich Low_complexity Low_complexity 1 24 0 1474 203 51 34 chr13 6219187 6219542 -95653627 + MLT1C-int LTR MaLR 1010 1370 -1 743 239 188 35 chr13 6219543 6219941 -95653228 + MLT1C LTR MaLR 6 464 -3 23 54 0 0 chr13 6220349 6220386 -95652783 + AT_rich Low_complexity Low_complexity 1 37 0 712 225 66 44 chr13 6220840 6221067 -95652102 + MLT1J LTR MaLR 13 244 -267 440 169 45 11 chr13 6221204 6221293 -95651876 + MLT1J LTR MaLR 420 511 0 22 0 0 0 chr13 6224902 6224924 -95648245 + AT_rich Low_complexity Low_complexity 1 22 0 816 210 19 12 chr13 6224926 6225088 -95648081 - FAM SINE Alu -12 163 1 2900 181 27 9 chr13 6225434 6225986 -95647183 - MER68 LTR ERV1 0 562 1 1919 170 80 18 chr13 6226480 6226879 -95646290 - MSTB LTR MaLR -2 424 1 25 0 0 0 chr13 6226974 6226999 -95646170 + AT_rich Low_complexity Low_complexity 1 25 0 288 273 182 0 chr13 6227344 6227476 -95645693 - L2 LINE L2 -447 2867 2712 2226 94 0 19 chr13 6227927 6228235 -95644934 + AluSc SINE Alu 1 302 -7 23 0 0 0 chr13 6228839 6228862 -95644307 + AT_rich Low_complexity Low_complexity 1 23 0 923 216 0 0 chr13 6228935 6229111 -95644058 + AluJb SINE Alu 137 312 0 699 184 19 25 chr13 6229150 6229308 -95643861 - L1MB8 LINE L1 -1 6177 6021 1557 169 64 0 chr13 6229309 6229604 -95643565 - L1MB8 LINE L1 -212 5966 5653 21 0 0 0 chr13 6230634 6230655 -95642514 + AT_rich Low_complexity Low_complexity 1 21 0 330 246 36 169 chr13 6230684 6230932 -95642237 - MIR SINE MIR -11 251 37 337 211 10 10 chr13 6231173 6231277 -95641892 + GA-rich Low_complexity Low_complexity 2 105 0 233 278 0 0 chr13 6231317 6231389 -95641780 + GA-rich Low_complexity Low_complexity 3 74 0 889 217 21 5 chr13 6232414 6232603 -95640566 - MER58A DNA MER1_type -3 221 30 2003 147 46 11 chr13 6233190 6233537 -95639632 - MER46B DNA MER2_type 0 236 3 1459 204 71 12 chr13 6233544 6233882 -95639287 - MER47A DNA MER2_type 0 366 9 2456 67 0 0 chr13 6234094 6234394 -95638775 - AluY SINE Alu -11 300 1 368 147 37 110 chr13 6234401 6234510 -95638659 - L1M4 LINE L1 -399 5779 5679 13795 190 36 14 chr13 6235245 6235656 -95637513 + L1PA16 LINE L1 1349 1749 -5120 2285 111 0 10 chr13 6235656 6235962 -95637207 + AluSp SINE Alu 1 303 -10 13795 190 36 14 chr13 6235962 6240948 -95632221 + L1PA16 LINE L1 1749 6860 -9 1023 234 62 34 chr13 6240925 6241313 -95631856 - L1M4 LINE L1 -1561 4585 4187 * 465 223 0 0 chr13 6241852 6241955 -95631214 - L1MA9 LINE L1 -37 6275 6173 204 388 110 0 chr13 6242513 6242776 -95630393 - L2 LINE L2 -542 2772 2481 456 202 126 0 chr13 6242951 6243070 -95630099 - Charlie5 DNA MER1_type -55 2557 2424 405 0 0 0 chr13 6246719 6246764 -95626405 + (TG)n Simple_repeat Simple_repeat 2 46 0 284 118 39 20 chr13 6246764 6246815 -95626354 - MER66B LTR ERV1 -140 346 295 2102 165 69 17 chr13 6247374 6247674 -95625495 - L1MB3 LINE L1 -32 6151 5823 2091 138 0 10 chr13 6247674 6247985 -95625184 - AluSx SINE Alu -4 308 1 2102 165 69 17 chr13 6247985 6248090 -95625079 - L1MB3 LINE L1 -360 5823 5725 743 316 128 9 chr13 6248117 6248572 -95624597 - L1MC/D LINE L1 -2004 5804 5296 2242 102 0 7 chr13 6248880 6249174 -95623995 + AluSc SINE Alu 1 292 -17 2135 180 8 0 chr13 6249440 6249802 -95623367 + MLT1A1 LTR MaLR 1 365 0 236 351 105 39 chr13 6250027 6250539 -95622630 + L2 LINE L2 2728 3270 -2 192 300 40 10 chr13 6251658 6251758 -95621411 - MIR SINE MIR -48 214 112 194 214 200 0 chr13 6251864 6251934 -95621235 + MIR SINE MIR 41 124 -84 551 237 39 77 chr13 6251984 6252191 -95620978 - MLT1J1 LTR MaLR 0 446 248 409 237 69 58 chr13 6252225 6252398 -95620771 - MER69A DNA AcHobo 0 177 3 243 234 47 0 chr13 6252500 6252564 -95620605 + MIR SINE MIR 196 262 0 204 40 0 0 chr13 6253609 6253634 -95619535 + (T)n Simple_repeat Simple_repeat 1 25 0 1023 200 44 5 chr13 6254571 6254776 -95618393 + MER20 DNA MER1_type 7 219 0 666 188 171 0 chr13 6255733 6255903 -95617266 - MLT1D LTR MaLR -3 502 304 1779 181 22 44 chr13 6255997 6256405 -95616764 - MER57A LTR ERV1 -4 399 1 621 199 41 23 chr13 6256405 6256576 -95616593 - MLT1D LTR MaLR -198 307 134 848 226 134 24 chr13 6256843 6257171 -95615998 - L1ME1 LINE L1 -5 6230 5867 2392 161 33 0 chr13 6257171 6257569 -95615600 - MSTB LTR MaLR 0 426 16 2824 211 49 40 chr13 6257587 6258563 -95614606 - L1ME1 LINE L1 -399 5836 4848 2174 127 0 3 chr13 6258563 6258862 -95614307 - AluSx SINE Alu -14 298 1 2824 211 49 40 chr13 6258862 6259148 -95614021 - L1ME1 LINE L1 -1387 4848 4566 864 280 52 0 chr13 6259184 6259470 -95613699 - L1ME1 LINE L1 -6067 329 29 347 216 30 26 chr13 6259640 6259755 -95613414 + L1ME LINE L1 5369 5456 -708 210 299 84 32 chr13 6259857 6260011 -95613158 - L2 LINE L2 -193 3079 2918 180 332 132 0 chr13 6261526 6261791 -95611378 - L2 LINE L2 -2499 815 516 304 319 49 16 chr13 6267108 6267207 -95605962 + MIR SINE MIR 14 108 -154 1749 161 3 42 chr13 6267207 6267518 -95605651 - AluSx SINE Alu -13 299 1 304 319 49 16 chr13 6267518 6267603 -95605566 + MIR SINE MIR 108 204 -58 180 0 0 0 chr13 6268318 6268338 -95604831 + (GA)n Simple_repeat Simple_repeat 1 20 0 467 63 16 0 chr13 6269012 6269075 -95604094 - MER4B LTR ERV1 0 610 547 3557 100 8 60 chr13 6269076 6269718 -95603451 - MER4B LTR ERV1 0 779 1 1037 125 0 36 chr13 6269718 6269884 -95603285 - MER4B LTR ERV1 -89 521 362 1051 172 78 5 chr13 6270025 6270229 -95602940 + L1PA6 LINE L1 5911 6129 -25 23 0 0 0 chr13 6270291 6270314 -95602855 + AT_rich Low_complexity Low_complexity 1 23 0 1868 168 0 3 chr13 6270472 6270776 -95602393 - AluJb SINE Alu -9 303 1 1660 169 20 10 chr13 6271943 6272239 -95600930 - AluJb SINE Alu -12 300 2 919 186 25 0 chr13 6272255 6272416 -95600753 + FAM SINE Alu 2 166 -9 2211 109 17 0 chr13 6272983 6273276 -95599893 + AluSx SINE Alu 1 298 -14 34 84 0 0 chr13 6274269 6274352 -95598817 + AT_rich Low_complexity Low_complexity 1 83 0 230 246 35 0 chr13 6274422 6274479 -95598690 + L2 LINE L2 3211 3269 -3 2448 42 0 51 chr13 6275929 6276241 -95596928 - AluY SINE Alu -15 296 1 237 322 23 0 chr13 6277053 6277140 -95596029 + MIR3 SINE MIR 74 162 -46 319 198 32 19 chr13 6277203 6277360 -95595809 + (TA)n Simple_repeat Simple_repeat 2 160 0 2477 51 10 0 chr13 6277466 6277758 -95595411 - AluY SINE Alu -16 295 1 2283 98 3 0 chr13 6280243 6280539 -95592630 - AluSq SINE Alu -16 297 1 863 208 38 32 chr13 6280577 6280765 -95592404 - L1MC4 LINE L1 -380 7662 7477 524 113 62 0 chr13 6280765 6280845 -95592324 - L1PA16 LINE L1 -10 6156 6072 863 208 38 32 chr13 6280845 6281073 -95592096 - L1MC4 LINE L1 -565 7477 7016 3461 175 50 5 chr13 6281119 6281777 -95591392 - Tigger2 DNA MER2_type -2029 689 2 273 206 68 14 chr13 6281777 6281831 -95591338 - L1MC4 LINE L1 -1506 6536 6476 3331 203 67 85 chr13 6281831 6282711 -95590458 - MER6 DNA MER2_type -1 864 1 273 206 68 14 chr13 6282711 6282729 -95590440 - L1MC4 LINE L1 -1566 6476 6460 617 225 43 0 chr13 6283394 6283532 -95589637 + FRAM SINE Alu 28 171 -5 1447 157 19 83 chr13 6283533 6283845 -95589324 + AluSq SINE Alu 1 292 -21 6119 191 36 27 chr13 6283845 6285280 -95587889 + L1 LINE L1 3889 5336 -810 2608 94 25 0 chr13 6285833 6286195 -95586974 - L1PA6 LINE L1 0 6154 5784 1558 213 82 49 chr13 6286350 6286839 -95586330 + MLT1D LTR MaLR 1 505 0 477 50 0 0 chr13 6287225 6287285 -95585884 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 24 53 0 0 chr13 6287576 6287614 -95585555 + AT_rich Low_complexity Low_complexity 1 38 0 675 159 0 40 chr13 6287670 6287796 -95585373 + FLAM_A SINE Alu 1 121 -12 249 57 0 0 chr13 6287827 6287862 -95585307 + (TA)n Simple_repeat Simple_repeat 2 36 0 979 275 95 32 chr13 6288160 6288691 -95584478 - L1ME3A LINE L1 -312 5919 5326 1940 119 19 0 chr13 6288691 6288959 -95584210 - AluSg SINE Alu 0 310 38 979 275 95 32 chr13 6288959 6289210 -95583959 - L1ME3A LINE L1 -905 5326 5092 2329 72 0 75 chr13 6289462 6289795 -95583374 - AluY SINE Alu -3 308 1 370 231 69 43 chr13 6289974 6290013 -95583156 - L1ME3A LINE L1 -2845 3370 3333 2455 83 0 16 chr13 6290013 6290326 -95582843 - AluSg SINE Alu -2 308 1 370 231 69 43 chr13 6290326 6290563 -95582606 - L1ME3A LINE L1 -2882 3333 3087 451 281 56 6 chr13 6290574 6290734 -95582435 + MIR SINE MIR 74 241 -21 22 94 0 0 chr13 6290890 6290954 -95582215 + AT_rich Low_complexity Low_complexity 1 64 0 297 263 144 54 chr13 6291093 6291552 -95581617 - L1MDa LINE L1 -871 1705 1311 654 305 47 72 chr13 6291640 6291992 -95581177 - L1MDa LINE L1 -5104 1101 767 682 194 8 8 chr13 6291992 6292116 -95581053 - FLAM_A SINE Alu -9 124 1 654 305 47 72 chr13 6292116 6292333 -95580836 - L1MDa LINE L1 -5438 767 546 371 127 28 0 chr13 6292335 6292406 -95580763 - MER53 DNA DNA 0 189 117 1394 195 44 13 chr13 6292445 6292505 -95580664 - L1MC1 LINE L1 0 6344 6287 2674 66 3 21 chr13 6292505 6292882 -95580287 - L1PA13 LINE L1 -2 6161 5792 1394 195 44 13 chr13 6292882 6292941 -95580228 - L1MC1 LINE L1 -57 6287 6231 429 109 0 0 chr13 6292941 6293005 -95580164 + (CA)n Simple_repeat Simple_repeat 2 65 0 1394 195 44 13 chr13 6293005 6293226 -95579943 - L1MC1 LINE L1 -113 6231 6009 455 245 25 80 chr13 6293560 6293723 -95579446 - L1MDa LINE L1 -5960 245 92 336 280 76 0 chr13 6293728 6293846 -95579323 - MIR SINE MIR -55 207 81 2302 150 92 9 chr13 6295024 6295472 -95577697 + MER31A LTR ERV1 1 485 0 21 0 0 0 chr13 6296112 6296133 -95577036 + AT_rich Low_complexity Low_complexity 1 21 0 266 250 53 0 chr13 6297587 6297663 -95575506 - MLT1G LTR MaLR -13 577 498 484 270 101 30 chr13 6297778 6298045 -95575124 - MLT1G LTR MaLR -290 300 15 1842 159 14 3 chr13 6298217 6298513 -95574656 - AluSx SINE Alu -13 299 1 1546 223 58 62 chr13 6298730 6298792 -95574377 - Charlie1 DNA MER1_type 0 2761 2700 1918 161 3 3 chr13 6298792 6299102 -95574067 + AluSx SINE Alu 1 310 -2 1546 223 58 62 chr13 6299102 6299569 -95573600 - Charlie1 DNA MER1_type -61 2700 2234 261 254 0 60 chr13 6300032 6300166 -95573003 + (CCCCAA)n Simple_repeat Simple_repeat 1 126 0 834 120 8 0 chr13 6306180 6306297 -95566872 - LTR12 LTR ERV1 -238 476 359 323 290 0 0 chr13 6306297 6306397 -95566772 - LTR30 LTR ERV1 -98 624 525 1712 117 0 146 chr13 6306397 6306792 -95566377 - pTR5 LTR ERV1 -429 2009 1352 879 199 11 69 chr13 6306879 6307141 -95566028 - pTR5 LTR ERV1 -1410 1028 782 258 273 102 0 chr13 6307747 6307835 -95565334 - MIR SINE MIR -73 189 93 2106 127 3 3 chr13 6308557 6308856 -95564313 - AluSc SINE Alu -10 299 1 3310 170 71 43 chr13 6311419 6312755 -95560414 + LTR19-int LTR ERV1 478 2131 -3086 2010 130 48 0 chr13 6312760 6313053 -95560116 - AluSx SINE Alu -5 307 1 520 121 0 36 chr13 6313576 6313659 -95559510 - FRAM SINE Alu -27 149 70 556 189 0 0 chr13 6314433 6314528 -95558641 + AluJb SINE Alu 206 300 -12 543 245 100 52 chr13 6314528 6314767 -95558402 - L1M4 LINE L1 -2043 4103 3846 2044 142 3 7 chr13 6314767 6315077 -95558092 - AluSx SINE Alu -3 309 1 543 245 100 52 chr13 6315077 6315127 -95558042 - L1M4 LINE L1 -2300 3846 3800 915 234 69 31 chr13 6315834 6316224 -95556945 + MLT1A1 LTR MaLR 10 363 -2 1457 163 16 16 chr13 6316368 6316620 -95556549 + AluJo SINE Alu 37 288 -24 189 0 0 0 chr13 6316637 6316658 -95556511 + (TG)n Simple_repeat Simple_repeat 2 22 0 285 62 0 42 chr13 6316709 6316757 -95556412 - Alu SINE Alu 0 302 257 5057 157 32 60 chr13 6317304 6318403 -95554766 - MER11C LTR ERVK -1 1070 3 551 269 145 44 chr13 6319776 6320013 -95553156 + MIR SINE MIR 4 261 -1 1540 193 0 7 chr13 6320017 6320313 -95552856 - AluJo SINE Alu -18 294 1 434 257 13 40 chr13 6320412 6320564 -95552605 + MER104 DNA Tc2 33 180 0 197 277 0 0 chr13 6321026 6321073 -95552096 + L2 LINE L2 3225 3271 -1 1912 134 0 0 chr13 6322238 6322522 -95550647 + AluSx SINE Alu 1 284 -28 231 326 62 39 chr13 6324099 6324228 -95548941 + MIR SINE MIR 81 212 -50 391 305 49 43 chr13 6325343 6325507 -95547662 + L2 LINE L2 3104 3268 -4 1994 116 10 0 chr13 6325991 6326293 -95546876 + AluSx SINE Alu 1 305 -7 610 67 56 0 chr13 6326675 6326764 -95546405 - AluY SINE Alu -7 304 211 201 39 0 0 chr13 6327574 6327600 -95545569 + (CA)n Simple_repeat Simple_repeat 2 27 0 395 111 0 0 chr13 6327630 6327684 -95545485 - MSTD LTR MaLR -342 54 1 361 223 138 0 chr13 6327757 6327887 -95545282 + L1ME LINE L1 1173 1319 -5087 1202 167 99 35 chr13 6327889 6328171 -95544998 + AluJo SINE Alu 6 305 -7 254 167 133 0 chr13 6328188 6328248 -95544921 + FAM SINE Alu 105 172 -3 707 222 46 42 chr13 6328248 6328509 -95544660 + L1ME LINE L1 2411 2672 -3734 * 5501 231 68 56 chr13 6328506 6328666 -95544503 + L1ME LINE L1 3359 3516 -2890 1914 140 3 10 chr13 6328666 6328980 -95544189 + AluSx SINE Alu 1 312 0 5501 231 68 56 chr13 6328980 6329205 -95543964 + L1ME LINE L1 3516 3737 -2669 1445 188 11 31 chr13 6329205 6329492 -95543677 - AluJo SINE Alu -29 283 3 5501 231 68 56 chr13 6329492 6330387 -95542782 + L1ME LINE L1 3737 4620 -1786 1717 118 0 4 chr13 6330387 6330641 -95542528 + L1PB1 LINE L1 5896 6148 -3 5501 231 68 56 chr13 6330641 6330891 -95542278 + L1ME LINE L1 4620 4866 -1540 2126 109 7 3 chr13 6330891 6331193 -95541976 + AluSq SINE Alu 1 303 -10 5501 231 68 56 chr13 6331193 6331816 -95541353 + L1ME LINE L1 4866 5545 -861 2240 71 7 0 chr13 6331816 6332110 -95541059 + AluY SINE Alu 1 296 -15 5501 231 68 56 chr13 6332110 6332206 -95540963 + L1ME LINE L1 5545 5638 -768 562 123 26 70 chr13 6332207 6332321 -95540848 - FLAM_C SINE Alu -6 137 29 268 262 37 47 chr13 6332322 6332429 -95540740 + L1ME LINE L1 5770 5875 -547 1965 125 17 0 chr13 6332429 6332724 -95540445 - AluSx SINE Alu -12 300 1 1748 165 0 16 chr13 6332772 6333081 -95540088 + AluJb SINE Alu 1 304 -8 888 300 93 39 chr13 6333143 6333636 -95539533 + LTR33 LTR ERVL 2 521 0 7374 49 6 10 chr13 6333772 6334950 -95538219 + SVA Other Other 326 1382 -4 391 320 66 22 chr13 6334954 6335135 -95538034 + L1MC/D LINE L1 4519 4707 -1439 1566 177 78 27 chr13 6335260 6335594 -95537575 - MSTD LTR MaLR -45 351 1 971 178 194 62 chr13 6335617 6335689 -95537480 + MER2 DNA MER2_type 1 62 -282 252 0 0 0 chr13 6335689 6335717 -95537452 + (TA)n Simple_repeat Simple_repeat 2 29 0 1985 77 7 39 chr13 6335719 6336005 -95537164 - AluY SINE Alu -34 277 1 971 178 194 62 chr13 6336005 6336233 -95536936 + MER2 DNA MER2_type 62 344 0 1567 185 0 17 chr13 6336270 6336567 -95536602 + AluJb SINE Alu 1 292 -20 921 307 45 12 chr13 6336633 6337034 -95536135 + L1MC/D LINE L1 5278 5691 -2117 1000 71 21 0 chr13 6337247 6337388 -95535781 - HSMAR1 DNA Mariner 0 1287 1144 2058 106 13 3 chr13 6337391 6337692 -95535477 - AluSp SINE Alu -1 312 9 188 319 116 48 chr13 6340567 6340774 -95532395 - MIR SINE MIR -40 222 2 672 210 76 93 chr13 6340837 6341127 -95532042 - MLT1B LTR MaLR 0 390 106 1497 108 42 12 chr13 6341201 6341441 -95531728 - Tigger2 DNA MER2_type -54 2664 2418 2290 87 0 6 chr13 6341695 6342007 -95531162 - AluY SINE Alu -1 310 1 226 259 141 0 chr13 6343993 6344078 -95529091 - MIR SINE MIR 0 262 166 188 200 20 0 chr13 6344315 6344365 -95528804 + (TA)n Simple_repeat Simple_repeat 2 52 0 2614 14 0 0 chr13 6345883 6346203 -95526966 - AluYa5 SINE Alu 0 320 1 22 0 0 0 chr13 6346498 6346520 -95526649 + AT_rich Low_complexity Low_complexity 1 22 0 1865 138 0 0 chr13 6347577 6347866 -95525303 + AluSg1 SINE Alu 1 289 -20 197 132 26 0 chr13 6348766 6348804 -95524365 + GA-rich Low_complexity Low_complexity 1 39 0 1320 162 46 12 chr13 6349326 6349567 -95523602 + MLT1A1 LTR MaLR 116 364 -1 775 245 125 14 chr13 6349806 6350014 -95523155 - MIR SINE MIR -14 248 18 423 281 136 25 chr13 6350184 6350383 -95522786 - MIR SINE MIR -14 248 28 352 263 73 47 chr13 6350424 6350615 -95522554 + MIR SINE MIR 16 207 -55 1818 189 20 85 chr13 6350654 6351150 -95522019 + MLT2C2 LTR ERVL 1 464 0 378 296 118 10 chr13 6352217 6352420 -95520749 + MER112 DNA MER1_type 3 227 -33 2946 147 68 9 chr13 6353480 6354024 -95519145 + L1MB3 LINE L1 5599 6174 -9 206 240 20 0 chr13 6357180 6357230 -95515939 + L2 LINE L2 3210 3260 -12 223 325 34 17 chr13 6357399 6357516 -95515653 + MIR SINE MIR 42 160 -102 312 247 169 0 chr13 6357687 6357776 -95515393 - MIR SINE MIR -82 180 77 246 244 252 9 chr13 6358392 6358507 -95514662 + LTR16C LTR ERVL 71 213 -278 529 200 25 0 chr13 6358529 6358649 -95514520 + LTR16C LTR ERVL 363 485 -6 375 163 11 22 chr13 6358887 6358979 -95514190 + GA-rich Low_complexity Low_complexity 3 93 0 1500 225 38 40 chr13 6359074 6359496 -95513673 + L1MC4a LINE L1 7346 7766 -42 685 140 0 0 chr13 6360326 6360426 -95512743 - FLAM_C SINE Alu -33 110 11 1990 126 7 0 chr13 6360439 6360741 -95512428 - AluSx SINE Alu -8 304 1 2294 66 0 7 chr13 6361548 6361849 -95511320 - AluY SINE Alu -12 299 1 1326 219 111 28 chr13 6362246 6362670 -95510499 + MLT1C LTR MaLR 1 459 -8 322 322 71 95 chr13 6362715 6362743 -95510426 + L1MC/D LINE L1 5322 5349 -2459 1685 171 0 25 chr13 6362743 6363058 -95510111 + AluJo SINE Alu 1 307 -5 322 322 71 95 chr13 6363058 6363312 -95509857 + L1MC/D LINE L1 5349 5597 -2211 2003 106 7 23 chr13 6363313 6363616 -95509553 - AluSx SINE Alu -14 298 1 1576 148 7 35 chr13 6363860 6364150 -95509019 - AluSx SINE Alu -22 290 9 516 248 36 22 chr13 6364207 6364344 -95508825 + MER74B LTR ERVL 67 205 -417 264 229 0 0 chr13 6364394 6364442 -95508727 - MIR SINE MIR -82 126 79 2634 26 0 3 chr13 6364505 6364817 -95508352 + AluYa5 SINE Alu 1 311 0 244 156 16 94 chr13 6364868 6364932 -95508237 - L2 LINE L2 0 3272 3214 263 175 18 0 chr13 6365073 6365130 -95508039 + CT-rich Low_complexity Low_complexity 1 58 0 2074 103 10 17 chr13 6365132 6365434 -95507735 - AluSp SINE Alu -2 311 12 2410 60 0 3 chr13 6365916 6366217 -95506952 - AluY SINE Alu -9 302 3 1811 188 135 12 chr13 6366427 6366843 -95506326 - MLT1C LTR MaLR 0 467 1 1934 148 0 7 chr13 6368634 6368944 -95504225 - AluSx SINE Alu -4 308 1 198 266 21 128 chr13 6369147 6369241 -95503928 - MIR SINE MIR -102 106 23 561 274 64 95 chr13 6369311 6369669 -95503500 - MLT1J LTR MaLR -54 457 111 279 178 41 27 chr13 6369608 6369681 -95503488 - LTR67 LTR ERVL -380 177 104 * 432 316 73 10 chr13 6370404 6370610 -95502559 - MARNA DNA Mariner -46 540 322 22 0 0 0 chr13 6372884 6372906 -95500263 + AT_rich Low_complexity Low_complexity 1 22 0 627 256 94 30 chr13 6374079 6374484 -95498685 + LTR33 LTR ERVL 1 467 -54 192 315 117 12 chr13 6374546 6374708 -95498461 - MIR SINE MIR -74 188 10 1573 154 39 29 chr13 6374776 6375055 -95498114 + AluJo SINE Alu 1 282 -30 637 277 98 5 chr13 6380926 6381150 -95492019 - MIR SINE MIR 0 262 18 295 284 8 94 chr13 6382327 6382429 -95490740 + MIR SINE MIR 59 150 -112 2255 106 0 6 chr13 6382429 6382740 -95490429 + AluY SINE Alu 1 309 -2 295 284 8 94 chr13 6382740 6382764 -95490405 + MIR SINE MIR 150 174 -88 752 207 18 12 chr13 6382959 6383123 -95490046 + MER5A DNA MER1_type 15 179 -10 1730 182 21 49 chr13 6384533 6384918 -95488251 - MLT1A2 LTR MaLR 0 374 1 341 291 61 10 chr13 6384952 6385148 -95488021 + MIR SINE MIR 47 252 -10 1283 204 106 0 chr13 6385290 6385555 -95487614 + MLT1A1 LTR MaLR 73 365 0 1604 259 21 42 chr13 6385557 6385990 -95487179 + MLT1F LTR MaLR 61 485 -57 1992 133 56 19 chr13 6385990 6386312 -95486857 - MER1B DNA MER1_type 0 337 4 1604 259 21 42 chr13 6386312 6386356 -95486813 + MLT1F LTR MaLR 485 528 -14 2281 117 3 0 chr13 6386674 6386982 -95486187 + AluSp SINE Alu 1 309 -4 238 283 0 0 chr13 6387234 6387287 -95485882 + (CA)n Simple_repeat Simple_repeat 1 53 0 2297 113 0 0 chr13 6387737 6388046 -95485123 - AluSc SINE Alu 0 309 1 1537 104 0 5 chr13 6388114 6388315 -95484854 - AluSx SINE Alu -112 200 1 184 107 0 0 chr13 6389031 6389059 -95484110 - L2 LINE L2 -1 3271 3244 195 42 0 0 chr13 6389061 6389085 -95484084 + (TG)n Simple_repeat Simple_repeat 1 24 0 213 222 287 9 chr13 6389504 6389612 -95483557 - L2 LINE L2 -1254 2060 1923 232 310 99 30 chr13 6389655 6389887 -95483282 + L1M4 LINE L1 3596 3843 -2303 1889 157 7 0 chr13 6389930 6390210 -95482959 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 6390396 6390418 -95482751 + AT_rich Low_complexity Low_complexity 1 22 0 1415 200 48 10 chr13 6390427 6390717 -95482452 + AluJo SINE Alu 1 301 -11 294 287 53 0 chr13 6390946 6391040 -95482129 + L2 LINE L2 3172 3270 -2 786 229 60 28 chr13 6391655 6391904 -95481265 + L1ME LINE L1 5539 5795 -326 4012 68 9 4 chr13 6392148 6392674 -95480495 + L1PA6 LINE L1 5625 6153 -1 1250 180 56 88 chr13 6393332 6393709 -95479460 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr13 6394371 6394398 -95478771 + (T)n Simple_repeat Simple_repeat 1 27 0 1312 215 60 3 chr13 6395303 6395587 -95477582 + AluJb SINE Alu 1 300 -2 2247 141 28 5 chr13 6395587 6395962 -95477207 - MLT1B LTR MaLR -8 388 1 1858 137 0 53 chr13 6396196 6396495 -95476674 + AluJb SINE Alu 1 283 -29 216 0 0 0 chr13 6396498 6396522 -95476647 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 186 243 57 14 chr13 6396872 6396942 -95476227 - MIR SINE MIR -7 255 183 257 0 30 0 chr13 6398076 6398109 -95475060 + (TC)n Simple_repeat Simple_repeat 1 34 0 973 172 12 6 chr13 6398132 6398295 -95474874 - FRAM SINE Alu -2 164 1 4599 189 25 16 chr13 6398603 6398861 -95474308 + L1MB2 LINE L1 4899 5153 -1018 2198 126 3 0 chr13 6398861 6399163 -95474006 + AluSx SINE Alu 1 303 -9 4599 189 25 16 chr13 6399163 6400163 -95473006 + L1MB2 LINE L1 5153 6171 0 337 241 54 27 chr13 6400920 6401032 -95472137 + MIR SINE MIR 19 133 -75 237 167 0 0 chr13 6401144 6401198 -95471971 + GA-rich Low_complexity Low_complexity 1 54 0 272 240 52 65 chr13 6401488 6401642 -95471527 - L1ME3A LINE L1 0 6170 6019 350 305 41 25 chr13 6401787 6401984 -95471185 - L1MC5 LINE L1 -440 7521 7322 604 249 116 6 chr13 6402105 6402286 -95470883 + MER3 DNA MER1_type 9 209 0 678 238 43 25 chr13 6402286 6402521 -95470648 - L1MC5 LINE L1 -760 7201 6963 748 192 99 29 chr13 6402526 6402682 -95470487 - AluJo SINE Alu -9 303 133 2370 111 0 0 chr13 6402682 6402988 -95470181 - AluSc SINE Alu -3 306 1 748 192 99 29 chr13 6402988 6403003 -95470166 - AluJo SINE Alu -179 133 120 1533 165 6 115 chr13 6403020 6403359 -95469810 - AluJb SINE Alu 0 302 1 354 321 207 0 chr13 6404245 6404438 -95468731 + MIR SINE MIR 28 260 -2 555 314 77 43 chr13 6404485 6405037 -95468132 + L2 LINE L2 2481 3114 -199 2008 105 28 14 chr13 6405037 6405322 -95467847 - AluSx SINE Alu -23 289 1 555 314 77 43 chr13 6405322 6405520 -95467649 + L2 LINE L2 3114 3304 -9 3904 167 23 20 chr13 6406038 6406775 -95466394 - L1MB3 LINE L1 -2 6181 5443 942 207 0 6 chr13 6406858 6407022 -95466147 - FAM SINE Alu -22 163 1 21 57 0 0 chr13 6407037 6407072 -95466097 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 6407916 6407947 -95465222 + AT_rich Low_complexity Low_complexity 1 31 0 4154 129 7 10 chr13 6409589 6410186 -95462983 - HSMAR1 DNA Mariner -218 1069 475 2196 120 0 0 chr13 6410198 6410489 -95462680 + AluSx SINE Alu 1 291 -21 3310 55 59 7 chr13 6410489 6410927 -95462242 + L1PA7 LINE L1 5686 6146 -8 2258 120 0 7 chr13 6410936 6411244 -95461925 + AluSg SINE Alu 1 306 -4 324 259 62 49 chr13 6411699 6411861 -95461308 + MER65-int LTR ERV1 98 261 -4610 309 229 91 48 chr13 6412607 6412817 -95460352 + L1MC5 LINE L1 7642 7860 -101 843 219 11 38 chr13 6413046 6413229 -95459940 - MER20 DNA MER1_type -4 215 38 5260 163 12 4 chr13 6413626 6414551 -95458618 - L1P LINE L1 -1232 4914 3983 2669 182 2 17 chr13 6414553 6415070 -95458099 + L1MB3 LINE L1 5675 6183 0 193 322 91 58 chr13 6415195 6415316 -95457853 + MIR SINE MIR 118 242 -20 257 342 53 0 chr13 6415515 6415629 -95457540 + L2 LINE L2 3185 3304 -9 1538 79 19 0 chr13 6416304 6416519 -95456650 + L1PA11 LINE L1 5956 6174 0 219 139 0 0 chr13 6416940 6416976 -95456193 + (A)n Simple_repeat Simple_repeat 1 36 0 236 94 0 0 chr13 6417368 6417444 -95455725 - Alu SINE Alu 0 324 249 2238 157 107 25 chr13 6417444 6417744 -95455425 + L1MC2 LINE L1 5820 6177 -167 2217 122 0 0 chr13 6417744 6418031 -95455138 + AluSc SINE Alu 1 287 -22 2238 157 107 25 chr13 6418031 6418215 -95454954 + L1MC2 LINE L1 6177 6344 0 324 0 0 0 chr13 6418415 6418451 -95454718 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 286 71 52 chr13 6419211 6419421 -95453748 + MIR SINE MIR 46 259 -3 255 289 72 0 chr13 6419475 6419558 -95453611 - MIR SINE MIR -167 95 7 366 323 161 53 chr13 6419675 6420295 -95452874 + L3 LINE CR1 888 1574 -3 1131 140 0 0 chr13 6420297 6420454 -95452715 + AluJb SINE Alu 4 160 -152 402 142 0 0 chr13 6420457 6420533 -95452636 + Alu SINE Alu 241 299 -3 2212 90 4 0 chr13 6421190 6421468 -95451701 + AluSg SINE Alu 1 301 0 199 0 0 0 chr13 6421468 6421490 -95451679 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 908 202 167 74 chr13 6421719 6422139 -95451030 + LTR37B LTR ERV1 10 468 0 1527 160 0 16 chr13 6422731 6422981 -95450188 - AluJb SINE Alu -16 296 51 30 45 0 0 chr13 6423507 6423551 -95449618 + AT_rich Low_complexity Low_complexity 1 44 0 3454 160 39 20 chr13 6423875 6424539 -95448630 + L1MB7 LINE L1 5495 6171 -13 1846 129 126 55 chr13 6427211 6427619 -95445550 + MER61C LTR ERV1 7 434 0 2603 58 0 3 chr13 6427674 6427982 -95445187 + AluY SINE Alu 1 307 -4 1238 134 5 5 chr13 6428009 6428203 -95444966 - Tigger1 DNA MER2_type 0 2418 2225 734 183 7 22 chr13 6428205 6428342 -95444827 + AluJo SINE Alu 2 136 -176 2594 142 27 0 chr13 6428358 6428767 -95444402 - Tigger1 DNA MER2_type -182 2236 1817 333 250 11 11 chr13 6428890 6428982 -95444187 - Tigger1 DNA MER2_type -857 1561 1470 335 157 33 13 chr13 6428982 6429135 -95444034 + (TATAA)n Simple_repeat Simple_repeat 4 159 0 353 175 44 17 chr13 6429140 6429425 -95443744 + (TTATA)n Simple_repeat Simple_repeat 1 292 0 31 0 0 0 chr13 6429425 6429456 -95443713 + AT_rich Low_complexity Low_complexity 1 31 0 336 80 68 51 chr13 6429456 6429632 -95443537 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 582 85 73 0 chr13 6429628 6429792 -95443377 + (TA)n Simple_repeat Simple_repeat 1 176 0 298 148 49 16 chr13 6429810 6429932 -95443237 + (TA)n Simple_repeat Simple_repeat 1 126 0 2201 84 0 11 chr13 6429940 6430224 -95442945 - AluY SINE Alu -30 281 1 8998 123 42 20 chr13 6430224 6431056 -95442113 - Tigger1 DNA MER2_type -939 1479 601 2076 115 34 3 chr13 6431056 6431352 -95441817 - AluSx SINE Alu -7 305 1 8998 123 42 20 chr13 6431352 6431956 -95441213 - Tigger1 DNA MER2_type -1817 601 12 21 0 0 0 chr13 6432453 6432474 -95440695 + AT_rich Low_complexity Low_complexity 1 21 0 426 351 137 17 chr13 6432858 6433217 -95439952 + L2 LINE L2 1872 2273 -1041 243 360 134 7 chr13 6434380 6434663 -95438506 + L2 LINE L2 2950 3268 -4 702 167 92 0 chr13 6434716 6434836 -95438333 + FLAM_C SINE Alu 2 132 -11 21 36 0 0 chr13 6434836 6434864 -95438305 + AT_rich Low_complexity Low_complexity 1 28 0 208 128 51 0 chr13 6435022 6435061 -95438108 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1840 152 3 20 chr13 6435974 6436270 -95436899 - AluSx SINE Alu -21 291 1 207 0 0 0 chr13 6436270 6436293 -95436876 + (T)n Simple_repeat Simple_repeat 1 23 0 1728 126 4 24 chr13 6436400 6436655 -95436514 - AluSq SINE Alu -9 304 55 24 32 0 0 chr13 6437032 6437063 -95436106 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 6438077 6438099 -95435070 + AT_rich Low_complexity Low_complexity 1 22 0 1427 123 88 4 chr13 6438174 6438434 -95434735 - L1MA5 LINE L1 -2 6298 6017 540 212 171 23 chr13 6438511 6438775 -95434394 - L1MC5 LINE L1 -50 7911 7609 314 345 12 25 chr13 6439105 6439355 -95433814 + HERVL LTR ERVL 1516 1800 -3964 345 287 71 96 chr13 6439576 6440070 -95433099 + HERVL LTR ERVL 3851 4395 -1090 376 293 132 19 chr13 6440555 6440963 -95432206 + L2 LINE L2 2581 3044 -269 443 219 24 41 chr13 6441840 6441963 -95431206 + LTR67 LTR ERVL 429 549 -8 1772 164 88 8 chr13 6442162 6442515 -95430654 + MLT1C LTR MaLR 2 382 -85 1933 145 35 0 chr13 6445492 6445781 -95427388 + AluSx SINE Alu 1 299 -13 237 230 142 35 chr13 6446005 6446118 -95427051 + MIR3 SINE MIR 3 127 -81 2121 116 7 13 chr13 6446879 6447182 -95425987 + AluSx SINE Alu 3 303 -9 460 208 10 10 chr13 6447214 6447315 -95425854 - MIR3 SINE MIR -39 169 69 2088 119 3 17 chr13 6447788 6448083 -95425086 - AluSg SINE Alu -19 291 1 338 136 40 160 chr13 6448146 6448271 -95424898 + MER34 LTR ERV1 433 542 0 1852 154 16 16 chr13 6448771 6449082 -95424087 + AluJb SINE Alu 1 311 -1 1556 182 37 14 chr13 6449788 6450085 -95423084 - AluJb SINE Alu -8 304 1 1530 228 47 17 chr13 6450344 6450747 -95422422 + MLT1C LTR MaLR 53 467 0 471 313 70 18 chr13 6450944 6451171 -95421998 - MIR SINE MIR 0 262 24 305 226 60 12 chr13 6451314 6451398 -95421771 - Charlie4 DNA MER1_type -33 1928 1841 1916 169 10 3 chr13 6452585 6452893 -95420276 - AluJo SINE Alu -2 310 1 696 148 9 0 chr13 6454389 6454497 -95418672 - AluJb SINE Alu -15 297 189 1014 147 0 0 chr13 6454497 6454640 -95418529 - AluSq/x SINE Alu -169 143 1 2018 157 0 0 chr13 6454943 6455249 -95417920 - AluJb SINE Alu -4 308 3 2185 108 0 62 chr13 6456207 6456532 -95416637 + AluSx SINE Alu 1 305 -7 344 208 35 6 chr13 6456649 6456822 -95416347 + (TA)n Simple_repeat Simple_repeat 2 179 0 648 203 0 17 chr13 6456890 6457008 -95416161 - FLAM_A SINE Alu -14 119 4 4583 153 38 27 chr13 6457012 6457308 -95415861 - L1MB3 LINE L1 -40 6143 5852 1900 130 3 25 chr13 6457308 6457617 -95415552 - AluSg SINE Alu 0 303 1 4583 153 38 27 chr13 6457617 6458079 -95415090 - L1MB3 LINE L1 -331 5852 5371 1952 79 0 20 chr13 6458079 6458331 -95414838 - AluSx SINE Alu -14 298 52 4583 153 38 27 chr13 6458331 6458416 -95414753 - L1MB3 LINE L1 -812 5371 5288 271 322 94 0 chr13 6458592 6458730 -95414439 + MIR SINE MIR 43 190 -67 1761 183 10 0 chr13 6458919 6459208 -95413961 - AluJo SINE Alu -15 297 6 271 284 15 0 chr13 6459416 6459483 -95413686 - MER5A DNA MER1_type -56 133 66 384 293 158 6 chr13 6459641 6459805 -95413364 - MIR SINE MIR -26 236 48 288 0 0 0 chr13 6460761 6460793 -95412376 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 6461436 6461459 -95411710 + AT_rich Low_complexity Low_complexity 1 23 0 755 203 152 21 chr13 6461581 6461832 -95411337 + L1MB7 LINE L1 4906 5201 -945 1883 151 0 35 chr13 6461832 6462143 -95411026 + AluJb SINE Alu 1 300 -12 755 203 152 21 chr13 6462143 6462181 -95410988 + L1MB7 LINE L1 5201 5233 -913 2049 197 100 24 chr13 6462187 6462655 -95410514 + MLT2B2 LTR ERVL 9 512 -3 3910 202 31 13 chr13 6462655 6463537 -95409632 + L1MB7 LINE L1 5236 6132 -52 341 285 59 31 chr13 6463574 6463746 -95409423 + L1ME3 LINE L1 5995 6152 -10 354 312 145 0 chr13 6463988 6464174 -95408995 - MIR SINE MIR -30 232 20 23 0 0 0 chr13 6465842 6465865 -95407304 + AT_rich Low_complexity Low_complexity 1 23 0 2441 78 0 7 chr13 6466264 6466570 -95406599 + AluY SINE Alu 1 304 -7 1073 160 48 21 chr13 6466582 6466770 -95406399 + AluSc SINE Alu 99 291 -18 1931 166 10 0 chr13 6466809 6467104 -95406065 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr13 6467372 6467407 -95405762 + AT_rich Low_complexity Low_complexity 1 35 0 2950 192 23 158 chr13 6468362 6469651 -95403518 + MER52A LTR ERV1 641 1755 0 2143 114 0 13 chr13 6472566 6472872 -95400297 + AluSx SINE Alu 1 302 -10 180 138 0 0 chr13 6473270 6473299 -95399870 + L2 LINE L2 3285 3313 0 334 316 53 18 chr13 6473329 6473500 -95399669 - MIR SINE MIR -7 255 79 360 294 28 0 chr13 6474688 6474797 -95398372 + MER81 DNA DNA 3 114 0 243 347 9 110 chr13 6474894 6475113 -95398056 + L2 LINE L2 2990 3186 -86 221 56 0 28 chr13 6475699 6475735 -95397434 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1310 118 68 27 chr13 6475851 6476072 -95397097 + MER30 DNA MER1_type 1 230 0 635 266 234 13 chr13 6476669 6477063 -95396106 + LTR33A LTR ERVL 5 485 -38 381 165 106 0 chr13 6477264 6477349 -95395820 - MER20 DNA MER1_type -31 188 95 552 239 9 0 chr13 6477446 6477555 -95395614 - FLAM_A SINE Alu -21 121 12 1867 163 3 6 chr13 6477597 6477910 -95395259 - AluSx SINE Alu 0 312 1 188 355 45 18 chr13 6480054 6480164 -95393005 + MIR SINE MIR 19 131 -77 2061 133 0 0 chr13 6481110 6481412 -95391757 + AluSg SINE Alu 1 302 -8 908 138 6 94 chr13 6482361 6482542 -95390627 - FRAM SINE Alu -1 165 1 229 309 56 40 chr13 6482588 6482714 -95390455 - L2 LINE L2 0 3272 3145 7233 163 28 27 chr13 6483137 6485174 -95387995 + L1MA8 LINE L1 3868 5923 -368 566 165 18 9 chr13 6485939 6486048 -95387121 + MER119 DNA MER1_type 474 583 0 389 230 216 14 chr13 6486726 6486865 -95386304 - MIR SINE MIR -83 179 13 1317 189 24 8 chr13 6487024 6487278 -95385891 + L1M3 LINE L1 5428 5685 -498 1784 114 67 0 chr13 6487279 6487620 -95385549 - L1PA11 LINE L1 -3 6171 5808 29 0 0 0 chr13 6488045 6488074 -95385095 + AT_rich Low_complexity Low_complexity 1 29 0 647 227 0 7 chr13 6488075 6488216 -95384953 - FLAM_C SINE Alu -2 141 2 2148 108 3 0 chr13 6490304 6490600 -95382569 + AluSg SINE Alu 1 297 -13 1617 225 36 0 chr13 6490939 6491272 -95381897 - MER7A DNA MER2_type -1 345 3 560 316 90 63 chr13 6491451 6492119 -95381050 - L1M4 LINE L1 -2985 3161 2476 1658 208 73 32 chr13 6492176 6492247 -95380922 + L1ME3A LINE L1 5391 5458 -712 2468 190 48 18 chr13 6492247 6492752 -95380417 + MLT2B1 LTR ERVL 1 520 0 1658 208 73 32 chr13 6492752 6492884 -95380285 + L1ME3A LINE L1 5458 5583 -587 1489 206 94 133 chr13 6492884 6493641 -95379528 + LTR8A LTR ERV1 1 727 0 1658 208 73 32 chr13 6493641 6493969 -95379200 + L1ME3A LINE L1 5583 5945 -225 998 180 46 14 chr13 6493969 6494186 -95378983 + AluJo SINE Alu 81 304 -8 613 241 116 15 chr13 6494186 6494385 -95378784 + L1ME3A LINE L1 5952 6170 0 442 291 84 11 chr13 6494485 6494664 -95378505 - MIR SINE MIR -32 230 39 1326 157 17 8 chr13 6495503 6495739 -95377430 - L1MA6 LINE L1 -231 6069 5832 1242 106 55 0 chr13 6495739 6495934 -95377235 + L1MA6 LINE L1 6091 6300 0 2142 117 0 0 chr13 6495943 6496252 -95376917 + AluSc SINE Alu 1 309 0 530 301 11 22 chr13 6497616 6497799 -95375370 + MER5A DNA MER1_type 3 183 -6 239 242 32 0 chr13 6500296 6500358 -95372811 + LTR67 LTR ERVL 4 67 -490 738 249 47 9 chr13 6501709 6501922 -95371247 + MER58A DNA MER1_type 1 221 -3 2327 65 0 7 chr13 6502261 6502555 -95370614 + AluY SINE Alu 1 292 -19 2017 113 0 7 chr13 6502766 6503071 -95370098 + AluSg SINE Alu 1 303 0 469 0 0 71 chr13 6503103 6503173 -95369996 - L1PA6 LINE L1 0 6154 6090 4798 240 44 23 chr13 6503602 6503975 -95369194 + L1M4 LINE L1 11 375 -6167 1726 149 43 4 chr13 6503975 6504256 -95368913 - AluSx SINE Alu -20 292 1 4798 240 44 23 chr13 6504256 6505127 -95368042 + L1M4 LINE L1 375 1281 -5261 189 315 176 23 chr13 6505128 6505474 -95367695 - L2 LINE L2 -694 2620 2222 1417 188 41 80 chr13 6505678 6506040 -95367129 + MLT1A1 LTR MaLR 1 348 -17 437 217 19 9 chr13 6506054 6506160 -95367009 + MER53 DNA DNA 34 140 -49 421 306 56 19 chr13 6507382 6507542 -95365627 + MIR SINE MIR 1 166 -96 767 186 70 12 chr13 6509444 6509616 -95363553 - MER53 DNA DNA 0 189 8 248 247 161 21 chr13 6510253 6510346 -95362823 - L3 LINE CR1 -375 1202 1097 1929 135 0 13 chr13 6510356 6510660 -95362509 + AluSx SINE Alu 1 300 -12 186 395 0 12 chr13 6510799 6510885 -95362284 - L3 LINE CR1 -634 943 859 809 108 0 17 chr13 6510919 6511039 -95362130 - FLAM_C SINE Alu -19 124 7 2865 3 0 0 chr13 6512928 6513244 -95359925 - AluYb8 SINE Alu -2 316 1 185 378 22 0 chr13 6513496 6513586 -95359583 + MIR SINE MIR 57 148 -114 293 316 75 23 chr13 6513739 6513913 -95359256 + L1MC/D LINE L1 5533 5715 -2093 25 0 0 0 chr13 6514054 6514079 -95359090 + AT_rich Low_complexity Low_complexity 1 25 0 851 206 16 22 chr13 6514085 6514269 -95358900 - AluJo SINE Alu -10 302 120 180 0 0 0 chr13 6514445 6514465 -95358704 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 374 254 90 8 chr13 6515955 6516089 -95357080 + L1MA9 LINE L1 5996 6140 -172 384 340 107 40 chr13 6516344 6516948 -95356221 + L2 LINE L2 2639 3269 -3 466 322 84 10 chr13 6517227 6517429 -95355740 + MIR SINE MIR 12 228 -34 250 257 14 57 chr13 6517478 6517548 -95355621 - MIR SINE MIR -180 82 16 724 251 33 5 chr13 6518143 6518358 -95354811 - L1PA16 LINE L1 -1 6165 5945 331 56 0 19 chr13 6518500 6518554 -95354615 - AluSc SINE Alu 0 299 247 521 291 132 24 chr13 6520409 6520660 -95352509 - L2 LINE L2 -5 3308 3031 * 526 269 59 90 chr13 6520630 6520687 -95352482 + MIR SINE MIR 14 71 -191 1911 186 38 28 chr13 6520687 6521084 -95352085 + MER57A LTR ERV1 1 401 -2 526 269 59 90 chr13 6521084 6521282 -95351887 + MIR SINE MIR 71 261 -1 2475 139 67 5 chr13 6521309 6521755 -95351414 + L1MB2 LINE L1 5689 6162 -9 235 297 59 30 chr13 6521850 6521951 -95351218 - MER91C DNA MER1_type -28 112 9 510 264 76 156 chr13 6521988 6522591 -95350578 - LTR67 LTR ERVL -1 556 2 209 273 61 68 chr13 6523147 6523279 -95349890 - L2 LINE L2 -1429 1885 1755 367 323 83 0 chr13 6524261 6524394 -95348775 + MIR SINE MIR 93 236 -26 1242 254 59 67 chr13 6524706 6525230 -95347939 - MLT2B1 LTR ERVL 0 520 1 3306 171 11 19 chr13 6526139 6526770 -95346399 + L1PA13 LINE L1 4127 4754 -1392 5555 98 44 43 chr13 6526770 6527779 -95345390 + L1PA13 LINE L1 5151 6161 -2 3306 171 11 19 chr13 6527779 6527791 -95345378 + L1PA13 LINE L1 4754 4765 -1381 1935 123 3 0 chr13 6527800 6528084 -95345085 + AluSx SINE Alu 23 307 -5 433 320 39 0 chr13 6529357 6529485 -95343684 + MIR SINE MIR 71 203 -59 556 330 56 26 chr13 6529705 6529938 -95343231 - MIR SINE MIR -2 260 21 1376 187 88 38 chr13 6530742 6531045 -95342124 - L1MD3 LINE L1 -232 7763 7440 2008 194 14 6 chr13 6531045 6531405 -95341764 - MLT1A1 LTR MaLR -2 363 1 1376 187 88 38 chr13 6531405 6531443 -95341726 - L1MD3 LINE L1 -555 7440 7405 239 323 135 51 chr13 6531628 6532319 -95340850 - L2 LINE L2 -2358 956 208 639 174 25 0 chr13 6532369 6532490 -95340679 + L1MA8 LINE L1 6164 6287 -4 219 341 81 8 chr13 6532500 6532623 -95340546 - L2 LINE L2 -1 3271 3140 249 83 0 0 chr13 6533039 6533075 -95340094 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 264 72 42 chr13 6533177 6533344 -95339825 - MIR3 SINE MIR -16 192 21 377 287 31 47 chr13 6533755 6533884 -95339285 + MIR SINE MIR 8 134 -128 5140 133 9 56 chr13 6533902 6534747 -95338422 - L1PA14 LINE L1 -1 6160 5375 1536 150 87 0 chr13 6534747 6535001 -95338168 - AluSg SINE Alu -34 276 1 5140 133 9 56 chr13 6535001 6535743 -95337426 - L1PA14 LINE L1 -786 5375 4600 2087 157 16 0 chr13 6535743 6536107 -95337062 + L1P LINE L1 3958 4327 -1819 202 299 102 16 chr13 6536108 6536235 -95336934 + MIR SINE MIR 125 262 0 219 266 0 110 chr13 6536443 6536511 -95336658 - L2 LINE L2 -20 3293 3239 2106 93 0 0 chr13 6536511 6536816 -95336353 + AluY SINE Alu 1 305 0 219 266 0 110 chr13 6536816 6536855 -95336314 - L2 LINE L2 -74 3239 3197 376 294 9 0 chr13 6537352 6537461 -95335708 + MIR SINE MIR 116 225 -37 1521 48 0 5 chr13 6538512 6538698 -95334471 + L1PA3 LINE L1 5968 6152 -3 255 61 0 0 chr13 6538742 6538775 -95334394 + (GA)n Simple_repeat Simple_repeat 1 33 0 595 138 0 0 chr13 6538775 6538862 -95334307 + LTR34 LTR ERV1 582 668 -31 442 243 115 40 chr13 6539121 6539269 -95333900 - L2 LINE L2 -1 3312 3154 368 284 12 77 chr13 6539977 6540146 -95333023 - MIR3 SINE MIR 0 208 51 182 278 33 44 chr13 6540161 6540251 -95332918 + L2 LINE L2 3184 3272 0 689 259 96 23 chr13 6540253 6540473 -95332696 - MIR SINE MIR -26 236 1 247 283 30 50 chr13 6542222 6542321 -95330848 - MIR3 SINE MIR -27 181 85 2077 118 7 0 chr13 6542601 6542906 -95330263 - AluSx SINE Alu -5 307 1 1237 131 10 5 chr13 6544040 6544239 -95328930 - AluJb SINE Alu 0 312 113 214 345 52 17 chr13 6544284 6544400 -95328769 - MIR SINE MIR -23 239 120 722 257 53 18 chr13 6544450 6544668 -95328501 + MIR SINE MIR 5 223 -39 193 271 21 0 chr13 6545373 6545421 -95327748 - L3 LINE CR1 -667 910 862 362 228 11 33 chr13 6545453 6545545 -95327624 + MER5B DNA MER1_type 89 178 0 242 211 18 0 chr13 6546311 6546368 -95326801 + MER94 DNA DNA 2 59 -75 320 307 161 21 chr13 6547433 6547713 -95325456 + L3 LINE CR1 1240 1558 -19 511 206 163 14 chr13 6548453 6548594 -95324575 + MIR SINE MIR 92 253 -9 1453 178 8 4 chr13 6549208 6549472 -95323697 + AluJo SINE Alu 18 282 -30 243 21 0 64 chr13 6549476 6549523 -95323646 + (CAA)n Simple_repeat Simple_repeat 2 45 0 246 372 0 12 chr13 6550266 6550352 -95322817 + MIR3 SINE MIR 113 197 -11 1240 178 26 42 chr13 6550547 6550811 -95322358 + MIR SINE MIR 2 261 -1 282 29 0 0 chr13 6550829 6550864 -95322305 + (GA)n Simple_repeat Simple_repeat 2 36 0 303 251 277 26 chr13 6550864 6550903 -95322266 - MIR SINE MIR -13 249 221 1871 161 0 3 chr13 6550903 6551201 -95321968 - AluJb SINE Alu -15 297 1 303 251 277 26 chr13 6551201 6551356 -95321813 - MIR SINE MIR -41 221 6 2194 104 7 0 chr13 6553507 6553814 -95319355 - AluSx SINE Alu -3 309 1 2794 13 0 0 chr13 6554474 6554789 -95318380 + AluYb8 SINE Alu 1 315 -3 604 251 161 5 chr13 6556841 6557040 -95316129 + MIR SINE MIR 33 262 0 481 240 281 20 chr13 6558223 6558419 -95314750 + MIR SINE MIR 1 247 -15 1622 185 0 7 chr13 6559067 6559359 -95313810 + AluJo SINE Alu 1 290 -22 2218 97 3 0 chr13 6560551 6560849 -95312320 + AluSq SINE Alu 3 301 -12 952 124 7 0 chr13 6560849 6560986 -95312183 + AluSq SINE Alu 137 274 -39 198 128 0 0 chr13 6560997 6561036 -95312133 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 256 316 140 35 chr13 6561529 6561700 -95311469 + MIR SINE MIR 9 197 -65 1731 130 0 11 chr13 6561846 6562116 -95311053 - AluSx SINE Alu -11 301 35 242 139 0 0 chr13 6563133 6563169 -95310000 - U2 snRNA snRNA -152 36 1 224 398 17 0 chr13 6563606 6563724 -95309445 + MIR SINE MIR 20 139 -123 947 174 6 0 chr13 6566356 6566523 -95306646 + FRAM SINE Alu 2 169 -7 517 237 26 84 chr13 6566705 6566895 -95306274 + MIR3 SINE MIR 19 197 -11 451 255 226 41 chr13 6566879 6567507 -95305662 + L2 LINE L2 2479 3263 -50 * 233 95 0 24 chr13 6567510 6567552 -95305617 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 560 68 0 0 chr13 6567652 6567726 -95305443 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 228 198 185 25 chr13 6567828 6567909 -95305260 + MIR SINE MIR 83 176 -86 841 144 8 15 chr13 6568018 6568150 -95305019 + FLAM_C SINE Alu 1 131 -2 513 275 8 8 chr13 6568176 6568307 -95304862 - MIR SINE MIR -14 248 118 315 254 0 0 chr13 6568846 6568913 -95304256 + L2 LINE L2 3201 3267 -5 373 278 26 17 chr13 6568920 6569035 -95304134 - MIR SINE MIR -69 139 24 2550 49 0 0 chr13 6569127 6569433 -95303736 - AluY SINE Alu -5 306 1 23 33 0 0 chr13 6569911 6569941 -95303228 + AT_rich Low_complexity Low_complexity 1 30 0 846 178 79 35 chr13 6569959 6570161 -95303008 - L1MB2 LINE L1 -36 6135 5925 22 0 0 0 chr13 6571302 6571324 -95301845 + AT_rich Low_complexity Low_complexity 1 22 0 1672 163 3 0 chr13 6571324 6571607 -95301562 - AluJo SINE Alu -22 290 7 879 209 0 16 chr13 6571813 6571995 -95301174 - AluJb SINE Alu -4 308 130 603 213 124 6 chr13 6572928 6573083 -95300086 - MER5A DNA MER1_type -6 183 4 282 313 42 7 chr13 6573141 6573285 -95299884 + MER103 DNA DNA 6 154 -12 2283 91 0 0 chr13 6573507 6573803 -95299366 + AluSx SINE Alu 1 296 -16 312 360 85 0 chr13 6574168 6574379 -95298790 - MIR SINE MIR -8 254 26 411 56 0 0 chr13 6574426 6574480 -95298689 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1486 195 14 34 chr13 6574480 6574636 -95298533 - AluJo SINE Alu -26 286 137 1849 144 0 63 chr13 6574636 6574955 -95298214 - AluJo SINE Alu -11 301 3 1486 195 14 34 chr13 6574955 6575090 -95298079 - AluJo SINE Alu -175 137 1 260 228 120 0 chr13 6575234 6575326 -95297843 - L1ME4a LINE L1 -13 6108 6006 557 60 0 12 chr13 6576061 6576144 -95297025 + (TC)n Simple_repeat Simple_repeat 2 83 0 246 264 210 24 chr13 6577789 6577956 -95295213 + MIR SINE MIR 40 237 -25 956 110 0 41 chr13 6578912 6579058 -95294111 - FLAM_C SINE Alu -3 140 1 302 240 88 104 chr13 6579345 6579537 -95293632 - MER5A DNA MER1_type 0 189 1 2110 121 0 0 chr13 6580720 6581002 -95292167 + AluSx SINE Alu 1 282 -30 1295 152 110 132 chr13 6581045 6581507 -95291662 + L1MB2 LINE L1 5481 5932 -239 2137 73 42 35 chr13 6581668 6581955 -95291214 + AluY SINE Alu 1 289 -22 1960 112 4 0 chr13 6581953 6582220 -95290949 + AluSg1 SINE Alu 27 294 -15 * 225 0 0 0 chr13 6582810 6582835 -95290334 + (TA)n Simple_repeat Simple_repeat 2 26 0 799 22 0 0 chr13 6582835 6582926 -95290243 - L1PA5 LINE L1 -16 6138 6048 2436 51 0 29 chr13 6586764 6587077 -95286092 - AluY SINE Alu -7 304 1 22 0 0 0 chr13 6587209 6587231 -95285938 + AT_rich Low_complexity Low_complexity 1 22 0 239 313 69 19 chr13 6587299 6587459 -95285710 - L1M2 LINE L1 -4392 2457 2290 567 223 23 0 chr13 6587462 6587592 -95285577 - L1MA10 LINE L1 -1 6333 6201 2170 107 0 0 chr13 6587592 6587873 -95285296 + AluSg SINE Alu 1 281 -29 7016 226 76 15 chr13 6587926 6590863 -95282306 - L1ME4a LINE L1 -151 6015 2894 991 140 18 12 chr13 6590864 6591028 -95282141 + THE1C LTR MaLR 1 165 -210 383 202 50 20 chr13 6591952 6592051 -95281118 + MLT1C-int LTR MaLR 1269 1370 -1 1203 199 205 13 chr13 6592052 6592438 -95280731 + MLT1C LTR MaLR 1 460 -7 1129 115 0 12 chr13 6592520 6592685 -95280484 + L1PA8 LINE L1 6001 6163 -9 812 168 0 0 chr13 6594068 6594199 -95278970 + FLAM_C SINE Alu 3 133 0 1978 167 0 0 chr13 6594232 6594538 -95278631 + AluJb SINE Alu 1 306 -6 331 346 82 0 chr13 6594923 6595105 -95278064 + MIR SINE MIR 14 210 -52 1855 171 0 7 chr13 6595361 6595660 -95277509 - AluJb SINE Alu -15 297 1 780 253 127 0 chr13 6595660 6595897 -95277272 + MER58B DNA MER1_type 75 341 0 218 56 28 0 chr13 6597036 6597072 -95276097 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 386 239 57 18 chr13 6597152 6597361 -95275808 - Charlie7 DNA MER1_type 0 2612 2317 21 0 0 0 chr13 6597368 6597389 -95275780 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr13 6597632 6597662 -95275507 + (CA)n Simple_repeat Simple_repeat 2 31 0 228 125 0 0 chr13 6597896 6597928 -95275241 - Charlie7 DNA MER1_type -1479 1133 1102 184 244 78 44 chr13 6598476 6598566 -95274603 + L2 LINE L2 3164 3256 -16 218 260 10 62 chr13 6598568 6598664 -95274505 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 2880 162 53 18 chr13 6599331 6599893 -95273276 + L1MB3 LINE L1 5601 6182 -1 21 0 0 0 chr13 6599893 6599914 -95273255 + AT_rich Low_complexity Low_complexity 1 21 0 1483 158 11 67 chr13 6600067 6600217 -95272952 - AluJb SINE Alu -24 288 131 192 40 0 0 chr13 6600217 6600242 -95272927 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 114 42 0 chr13 6600243 6600507 -95272662 - AluSq SINE Alu -30 283 9 1483 158 11 67 chr13 6600507 6600638 -95272531 - AluJb SINE Alu -180 132 21 731 135 92 0 chr13 6602759 6602896 -95270273 - LTR12 LTR ERV1 0 714 270 2831 182 118 39 chr13 6602896 6603533 -95269636 - LTR12 LTR ERV1 0 688 2 860 206 34 48 chr13 6603716 6604008 -95269161 - pTR5 LTR ERV1 -1410 1028 741 268 350 61 19 chr13 6604650 6604864 -95268305 - L1ME LINE L1 -523 5598 5376 207 191 0 0 chr13 6605079 6605126 -95268043 + T-rich Low_complexity Low_complexity 1 47 0 589 264 96 42 chr13 6605160 6605624 -95267545 - L1ME LINE L1 -1487 4659 4167 1636 170 3 23 chr13 6605624 6605930 -95267239 - AluJo SINE Alu -12 300 1 589 264 96 42 chr13 6605930 6605942 -95267227 - L1ME LINE L1 -1979 4167 4157 5354 59 6 1 chr13 6606184 6606849 -95266320 - L1PA7 LINE L1 -15 6139 5472 293 271 67 36 chr13 6607122 6607323 -95265846 - L1ME1 LINE L1 -204 5962 5758 185 255 43 0 chr13 6607472 6607519 -95265650 + L2 LINE L2 3249 3297 -16 785 281 166 31 chr13 6607569 6608984 -95264185 - L1ME1 LINE L1 -598 5572 3953 21 36 0 0 chr13 6609057 6609085 -95264084 + AT_rich Low_complexity Low_complexity 1 28 0 1339 176 4 4 chr13 6609274 6609535 -95263634 - L1MA5A LINE L1 -923 5223 4963 * 5757 139 34 13 chr13 6609520 6610101 -95263068 + L1MA5A LINE L1 5209 5827 -470 279 0 0 0 chr13 6610101 6610132 -95263037 + (CA)n Simple_repeat Simple_repeat 2 32 0 5757 139 34 13 chr13 6610132 6610584 -95262585 + L1MA5A LINE L1 5827 6268 -29 28 0 0 0 chr13 6610596 6610624 -95262545 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr13 6612636 6612665 -95260504 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1907 173 42 75 chr13 6613811 6614239 -95258930 + MLT2D LTR ERVL 1 414 0 219 299 120 8 chr13 6615952 6616069 -95257100 + MIR SINE MIR 81 210 -52 1766 79 9 0 chr13 6616260 6616488 -95256681 + MER30 DNA MER1_type 1 230 0 2203 168 23 44 chr13 6617268 6617703 -95255466 + MSTB LTR MaLR 1 426 0 1330 87 0 12 chr13 6617981 6618153 -95255016 - AluSx SINE Alu -142 170 1 5039 126 23 88 chr13 6618153 6619169 -95254000 + Tigger3b DNA MER2_type 282 1231 0 4046 208 45 13 chr13 6619178 6620329 -95252840 + L1MB8 LINE L1 4316 5505 -675 1111 176 24 0 chr13 6620329 6620539 -95252630 + L1MB2 LINE L1 5950 6164 -7 3451 161 24 15 chr13 6620569 6621228 -95251941 + L1MB8 LINE L1 5514 6178 0 265 108 0 0 chr13 6621482 6621519 -95251650 - U2 snRNA snRNA -151 37 1 1726 185 18 0 chr13 6621835 6622121 -95251048 + AluJo SINE Alu 1 291 -21 1002 171 37 180 chr13 6622121 6622250 -95250919 + MLT1A2 LTR MaLR 34 89 -285 1461 133 41 5 chr13 6622250 6622468 -95250701 + AluJo SINE Alu 14 239 -73 1002 171 37 180 chr13 6622468 6622665 -95250504 + MLT1A2 LTR MaLR 89 313 -61 1704 140 92 4 chr13 6622924 6623196 -95249973 + AluSx SINE Alu 1 296 -16 267 301 21 11 chr13 6624197 6624290 -95248879 + L2 LINE L2 3179 3272 0 211 64 21 43 chr13 6624715 6624762 -95248407 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4572 219 135 108 chr13 6624813 6625109 -95248060 + L1MD1 LINE L1 2620 2906 -3240 2278 118 0 6 chr13 6625109 6625422 -95247747 + AluSx SINE Alu 1 311 -1 4572 219 135 108 chr13 6625422 6626582 -95246587 + L1MD1 LINE L1 2906 4033 -2113 342 0 0 0 chr13 6626582 6626620 -95246549 + (CA)n Simple_repeat Simple_repeat 1 38 0 4572 219 135 108 chr13 6626620 6626688 -95246481 + L1MD1 LINE L1 4033 4098 -2048 1379 113 0 10 chr13 6626688 6626892 -95246277 + AluSc SINE Alu 83 284 -25 4572 219 135 108 chr13 6626892 6627731 -95245438 + L1MD1 LINE L1 4098 5261 -885 1061 187 93 45 chr13 6627728 6628017 -95245152 + L1MD1 LINE L1 5855 6157 -85 * 186 143 0 0 chr13 6630996 6631031 -95242138 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 28 71 0 0 chr13 6631094 6631150 -95242019 + AT_rich Low_complexity Low_complexity 1 56 0 200 111 28 0 chr13 6632115 6632151 -95241018 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 195 197 61 76 chr13 6632775 6632841 -95240328 - MIR SINE MIR -21 241 177 537 288 113 0 chr13 6632847 6633007 -95240162 + MER5B DNA MER1_type 1 178 0 820 207 0 0 chr13 6633019 6633169 -95240000 + MLT1A1 LTR MaLR 1 150 -215 675 238 33 0 chr13 6633249 6633400 -95239769 - MER5A DNA MER1_type 0 189 34 303 310 93 81 chr13 6633474 6633797 -95239372 + L2 LINE L2 2896 3222 -50 204 301 118 0 chr13 6635266 6635359 -95237810 + MIR SINE MIR 31 134 -128 467 269 39 19 chr13 6635399 6635555 -95237614 - MER105 DNA DNA -21 183 25 251 280 80 0 chr13 6636225 6636300 -95236869 + MIR SINE MIR 62 142 -66 1709 148 3 27 chr13 6636572 6636869 -95236300 - AluJo SINE Alu -22 290 1 608 229 7 33 chr13 6637205 6637358 -95235811 + MIR SINE MIR 104 252 -10 2082 112 7 0 chr13 6639443 6639746 -95233423 + AluSx SINE Alu 1 305 -7 1212 219 33 17 chr13 6640268 6640570 -95232599 + L1MC2 LINE L1 6029 6335 -9 301 241 68 30 chr13 6640571 6640704 -95232465 + L1ME4a LINE L1 5982 6119 -2 274 308 64 41 chr13 6641133 6641305 -95231864 + MIR SINE MIR 81 256 -6 252 339 54 32 chr13 6641408 6641594 -95231575 + MIR3 SINE MIR 3 192 -16 590 329 57 5 chr13 6641971 6642181 -95230988 - MIR SINE MIR -25 237 17 2416 44 3 19 chr13 6642390 6642705 -95230464 + AluY SINE Alu 1 310 -1 180 207 17 69 chr13 6642928 6642986 -95230183 - MIR3 SINE MIR -24 184 130 350 275 11 11 chr13 6643219 6643310 -95229859 + MIR SINE MIR 172 262 0 3604 134 28 13 chr13 6643708 6644322 -95228847 + L1MB3 LINE L1 5559 6181 -2 352 250 130 29 chr13 6644736 6644838 -95228331 + MIR SINE MIR 45 154 -66 1821 132 35 0 chr13 6644843 6645131 -95228038 + AluSq SINE Alu 3 300 -13 1045 221 38 38 chr13 6645139 6645401 -95227768 + MLT1E LTR MaLR 332 593 0 1807 240 73 22 chr13 6645403 6645949 -95227220 - L1ME3 LINE L1 -104 6058 5485 364 250 23 0 chr13 6645952 6646040 -95227129 + MIR SINE MIR 117 206 -56 223 222 123 37 chr13 6646097 6646178 -95226991 - MIR SINE MIR -166 96 9 6310 178 40 3 chr13 6646523 6647983 -95225186 + ERVL LTR ERVL 4130 5698 -66 7511 37 8 6 chr13 6648070 6649532 -95223637 - L1PA4 LINE L1 -3 6152 4688 1901 173 42 75 chr13 6651143 6651571 -95221598 - MLT2D LTR ERVL 0 414 1 257 214 57 29 chr13 6652520 6652590 -95220579 - LTR33 LTR ERVL -2 519 448 559 262 115 16 chr13 6652700 6652883 -95220286 - LTR33 LTR ERVL -319 202 2 188 280 217 35 chr13 6653125 6653268 -95219901 - L2 LINE L2 -10 3262 3094 684 168 18 0 chr13 6653426 6653539 -95219630 - FLAM_C SINE Alu -18 115 1 774 177 8 0 chr13 6653612 6653736 -95219433 + FLAM_C SINE Alu 2 126 -17 2293 92 0 0 chr13 6653752 6654058 -95219111 + AluSx SINE Alu 1 306 -6 360 229 14 0 chr13 6654125 6654195 -95218974 - L2 LINE L2 -18 3254 3184 2327 97 3 0 chr13 6654244 6654554 -95218615 + AluSp SINE Alu 1 311 -2 557 49 12 0 chr13 6654742 6654823 -95218346 + (CA)n Simple_repeat Simple_repeat 1 82 0 2008 188 261 12 chr13 6654919 6655521 -95217648 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1101 204 92 55 chr13 6655536 6655938 -95217231 - MLT2B1 LTR ERVL -40 475 13 274 239 42 14 chr13 6655946 6656017 -95217152 - HERVL-B1 LTR ERVL 0 5654 5582 775 72 0 0 chr13 6656021 6656118 -95217051 + L1PA4 LINE L1 2 98 -6048 * 39032 38 9 1 chr13 6656116 6661606 -95211563 + L1PA4 LINE L1 623 6152 -3 6310 173 31 9 chr13 6661693 6663858 -95209311 - ERVL LTR ERVL -66 5698 3433 1765 128 15 15 chr13 6663865 6664130 -95209039 - ERVL LTR ERVL -2909 2855 2591 * 3525 173 5 9 chr13 6664115 6664149 -95209020 - ERVL LTR ERVL -3432 2332 2299 1461 159 120 19 chr13 6664149 6664457 -95208712 + MER44D DNA MER2_type 1 609 0 3525 173 5 9 chr13 6664457 6665001 -95208168 - ERVL LTR ERVL -3465 2299 1756 835 211 0 0 chr13 6665032 6665188 -95207981 - FRAM SINE Alu -19 157 2 7769 207 70 10 chr13 6665188 6666838 -95206331 - ERVL LTR ERVL -4013 1751 2 291 143 0 57 chr13 6666839 6666909 -95206260 - MLT2B1 LTR ERVL 0 554 455 181 156 16 16 chr13 6666911 6666975 -95206194 + (TA)n Simple_repeat Simple_repeat 2 65 0 216 0 0 0 chr13 6666982 6667006 -95206163 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 2103 177 144 14 chr13 6667006 6667429 -95205740 - MLT2B1 LTR ERVL -42 478 1 583 82 27 49 chr13 6669299 6669482 -95203687 + (CA)n Simple_repeat Simple_repeat 1 179 0 553 83 29 51 chr13 6669501 6669858 -95203311 + (CA)n Simple_repeat Simple_repeat 1 348 0 389 141 34 40 chr13 6669924 6670101 -95203068 + (CA)n Simple_repeat Simple_repeat 1 176 0 268 142 43 43 chr13 6670123 6670285 -95202884 + (CA)n Simple_repeat Simple_repeat 1 162 0 332 144 11 61 chr13 6670345 6670526 -95202643 + (CA)n Simple_repeat Simple_repeat 1 172 0 273 130 24 49 chr13 6670579 6670702 -95202467 + (CA)n Simple_repeat Simple_repeat 1 120 0 340 190 33 37 chr13 6670728 6671201 -95201968 + (CA)n Simple_repeat Simple_repeat 1 471 0 188 341 57 0 chr13 6672408 6672531 -95200638 + L2 LINE L2 2927 3056 -257 247 295 48 19 chr13 6674147 6674252 -95198917 + MIR SINE MIR 116 223 -39 219 132 0 53 chr13 6677948 6678024 -95195145 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 336 276 45 35 chr13 6678621 6678776 -95194393 + MLT1E3 LTR MaLR 243 406 -218 180 216 0 0 chr13 6679500 6679551 -95193618 + T-rich Low_complexity Low_complexity 1 51 0 186 156 0 0 chr13 6680180 6680212 -95192957 + L2 LINE L2 3241 3272 0 232 272 136 19 chr13 6680399 6680502 -95192667 - L1MC4 LINE L1 -1 8041 7927 396 371 84 16 chr13 6680953 6681322 -95191847 - L1ME LINE L1 -472 5698 5305 388 318 95 56 chr13 6681486 6681714 -95191455 - L1ME LINE L1 -838 5308 5090 2055 110 40 0 chr13 6681714 6682014 -95191155 + AluSx SINE Alu 1 312 0 388 318 95 56 chr13 6682014 6682354 -95190815 - L1ME LINE L1 -1056 5090 4765 3931 179 51 60 chr13 6682354 6683317 -95189852 - LTR13 LTR ERVK 0 954 1 388 318 95 56 chr13 6683317 6684019 -95189150 - L1ME LINE L1 -1381 4765 3987 197 132 26 0 chr13 6685801 6685839 -95187330 + (TA)n Simple_repeat Simple_repeat 1 39 0 1304 96 0 119 chr13 6685858 6686119 -95187050 - AluSc SINE Alu -7 302 73 1464 172 62 0 chr13 6686139 6686395 -95186774 - L1MC3 LINE L1 -830 6955 6684 1330 262 51 0 chr13 6686399 6686811 -95186358 + L1MB8 LINE L1 1046 1478 -4906 677 192 7 34 chr13 6686812 6686958 -95186211 - MER4D LTR ERV1 0 903 762 2931 117 60 7 chr13 6686964 6687418 -95185751 + MER9 LTR ERVK 34 511 0 2320 174 30 111 chr13 6687418 6688119 -95185050 - MER4E LTR ERV1 -135 644 1 1146 261 127 40 chr13 6688126 6688904 -95184265 + L1MB8 LINE L1 1632 2477 -4086 712 182 15 15 chr13 6688918 6689050 -95184119 + FLAM_C SINE Alu 1 132 -1 8034 66 6 5 chr13 6689063 6690069 -95183100 + LTR13 LTR ERVK 1 1007 0 1128 101 6 24 chr13 6690069 6690237 -95182932 + AluSg/x SINE Alu 139 303 -7 10660 218 36 36 chr13 6690238 6690398 -95182771 + L1MB8 LINE L1 2449 2608 -3962 1978 149 0 0 chr13 6690398 6690700 -95182469 + AluSg SINE Alu 1 302 -8 10660 218 36 36 chr13 6690700 6692313 -95180856 + L1MB8 LINE L1 2608 4220 -2350 2185 105 0 0 chr13 6692313 6692607 -95180562 + AluSg SINE Alu 1 294 -16 10660 218 36 36 chr13 6692607 6694805 -95178364 + L1MB8 LINE L1 4220 6570 0 379 253 105 49 chr13 6694946 6695250 -95177919 + L1M4 LINE L1 3673 3993 -2153 489 310 104 51 chr13 6695276 6695727 -95177442 + REP3 LTR ERV 1 475 -87 21 36 0 0 chr13 6696025 6696053 -95177116 + AT_rich Low_complexity Low_complexity 1 28 0 438 244 0 0 chr13 6696565 6696655 -95176514 + LTR33A LTR ERVL 434 523 0 363 255 27 53 chr13 6696992 6697180 -95175989 + L1P4 LINE L1 4886 5068 -1078 1972 129 30 0 chr13 6697334 6697637 -95175532 + AluSx SINE Alu 1 312 0 335 305 48 32 chr13 6697678 6698011 -95175158 + L1P4 LINE L1 5254 5598 -568 1311 214 38 70 chr13 6698047 6698444 -95174725 - MLT1B LTR MaLR 0 390 7 337 106 0 0 chr13 6699335 6699382 -95173787 - MLT1E1 LTR MaLR -423 231 185 1065 242 36 4 chr13 6700343 6700664 -95172505 + MLT1A1 LTR MaLR 13 446 -21 477 200 62 31 chr13 6700808 6700938 -95172231 + MIR SINE MIR 50 183 -79 864 177 29 0 chr13 6701875 6702050 -95171119 + L1MB7 LINE L1 5288 5467 -707 698 155 8 25 chr13 6702067 6702306 -95170863 + GA-rich Low_complexity Low_complexity 1 234 0 447 188 21 31 chr13 6702472 6702568 -95170601 + L1MB7 LINE L1 5484 5578 -602 1046 233 43 30 chr13 6702608 6702909 -95170260 + L1MB7 LINE L1 5819 6123 -61 199 220 169 0 chr13 6702928 6702987 -95170182 - MIR SINE MIR -94 168 100 609 221 16 0 chr13 6707793 6707914 -95165255 - MER58B DNA MER1_type 0 341 219 1564 84 23 28 chr13 6707914 6708128 -95165041 + THE1B LTR MaLR 1 213 -151 1591 199 46 35 chr13 6709398 6709802 -95163367 + L1M2c LINE L1 1563 1974 -4875 1817 164 10 0 chr13 6709802 6710106 -95163063 + AluSx SINE Alu 3 309 -3 1591 199 46 35 chr13 6710106 6710133 -95163036 + L1M2c LINE L1 1974 1999 -4850 3597 176 11 28 chr13 6710148 6710251 -95162918 + L1M2c LINE L1 2230 2333 -4515 1734 163 10 7 chr13 6710251 6710552 -95162617 + AluSx SINE Alu 2 303 -9 3597 176 11 28 chr13 6710552 6711553 -95161616 + L1M2c LINE L1 2333 3319 -3529 1526 107 34 0 chr13 6711560 6711794 -95161375 + L1MA5 LINE L1 6056 6297 -3 1009 252 24 18 chr13 6711862 6712121 -95161048 - MLT1H LTR MaLR -248 301 1 4677 236 38 28 chr13 6712575 6713791 -95159378 + L1PA12 LINE L1 10 2319 -5265 3612 82 21 10 chr13 6713780 6714303 -95158866 + L1PA11 LINE L1 5259 5787 -387 * 21 0 0 0 chr13 6715010 6715031 -95158138 + AT_rich Low_complexity Low_complexity 1 21 0 2648 114 25 0 chr13 6715330 6715726 -95157443 + L1PA11 LINE L1 5769 6174 0 300 246 36 18 chr13 6715799 6715909 -95157260 - L1ME3 LINE L1 -2 6160 6049 * 2879 249 112 24 chr13 6715904 6716547 -95156622 - L1M4 LINE L1 -1130 5016 4431 1320 158 102 39 chr13 6716547 6716832 -95156337 - AluJo SINE Alu -9 303 1 2879 249 112 24 chr13 6716832 6717426 -95155743 - L1M4 LINE L1 -1715 4431 3670 189 222 22 0 chr13 6718197 6718242 -95154927 + MER5B DNA MER1_type 12 57 -121 558 43 0 0 chr13 6719528 6719597 -95153572 + (TA)n Simple_repeat Simple_repeat 2 70 0 2203 79 0 4 chr13 6719784 6720117 -95153052 + AluSq SINE Alu 5 336 0 460 290 192 30 chr13 6720121 6720559 -95152610 - L1ME4a LINE L1 -293 5828 5320 233 255 0 0 chr13 6721216 6721267 -95151902 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 280 20 0 chr13 6723108 6723208 -95149961 + GA-rich Low_complexity Low_complexity 1 102 0 5528 152 52 11 chr13 6723342 6723607 -95149562 - L1MA8 LINE L1 0 6291 6039 2090 119 0 3 chr13 6723607 6723909 -95149260 + AluSq SINE Alu 3 303 -10 5528 152 52 11 chr13 6723909 6725098 -95148071 - L1MA8 LINE L1 -252 6039 4774 321 195 26 13 chr13 6725604 6725681 -95147488 + MER116 DNA Mariner 3 80 0 697 289 98 68 chr13 6725967 6726099 -95147070 - L1ME4a LINE L1 -847 5299 5172 1824 119 0 34 chr13 6726099 6726393 -95146776 - AluJb SINE Alu -15 297 14 465 164 0 0 chr13 6726337 6726404 -95146765 - AluJ/FLAM SINE Alu -243 69 3 * 697 289 98 68 chr13 6726404 6726731 -95146438 - L1ME4a LINE L1 -985 5161 4815 434 240 186 10 chr13 6726732 6726936 -95146233 - L1ME4a LINE L1 -1371 4775 4536 4485 267 110 35 chr13 6727055 6727109 -95146060 - L1ME LINE L1 -399 5763 5714 2053 132 3 0 chr13 6727109 6727405 -95145764 - AluSx SINE Alu -15 297 1 4485 267 110 35 chr13 6727405 6728735 -95144434 - L1ME LINE L1 -448 5714 4485 1821 148 0 30 chr13 6728735 6729039 -95144130 - AluJb SINE Alu -17 295 1 4485 267 110 35 chr13 6729039 6729274 -95143895 - L1ME LINE L1 -1677 4485 4269 333 0 0 0 chr13 6729274 6729311 -95143858 + (TG)n Simple_repeat Simple_repeat 1 37 0 4485 267 110 35 chr13 6729311 6729342 -95143827 - L1ME LINE L1 -1893 4269 4242 1944 143 13 7 chr13 6729342 6729650 -95143519 + AluSx SINE Alu 1 310 -2 4485 267 110 35 chr13 6729650 6730972 -95142197 - L1ME LINE L1 -1920 4242 2565 594 301 42 32 chr13 6731178 6731490 -95141679 - L1ME4a LINE L1 -1995 4151 3837 3252 135 22 15 chr13 6731579 6731891 -95141278 - L1PA16 LINE L1 -21 6145 5826 2383 104 0 0 chr13 6731891 6732198 -95140971 - AluSq SINE Alu -6 307 1 3252 135 22 15 chr13 6732198 6732425 -95140744 - L1PA16 LINE L1 -340 5826 5602 549 108 11 0 chr13 6732418 6732511 -95140658 - L1PA16 LINE L1 -774 5392 5299 * 1836 81 3 88 chr13 6732512 6732808 -95140361 - LTR14B LTR ERVK -321 287 17 385 309 121 18 chr13 6732901 6733066 -95140103 - MER5A DNA MER1_type 0 189 8 242 378 0 12 chr13 6733101 6733183 -95139986 - MER5A DNA MER1_type -31 158 78 2503 180 47 16 chr13 6733326 6733820 -95139349 - LTR22 LTR ERVK 0 509 1 1758 166 0 14 chr13 6733953 6734242 -95138927 + AluJo SINE Alu 1 285 -27 2356 101 0 3 chr13 6734253 6734561 -95138608 + AluSq SINE Alu 1 307 -6 435 287 161 36 chr13 6735757 6735980 -95137189 + MIR SINE MIR 2 252 -10 514 226 211 39 chr13 6736134 6736293 -95136876 - Charlie7 DNA MER1_type -3 2609 2479 2120 128 0 0 chr13 6736293 6736582 -95136587 - AluSc SINE Alu -20 289 1 514 226 211 39 chr13 6736582 6736759 -95136410 - Charlie7 DNA MER1_type -133 2479 2215 21 36 0 0 chr13 6736908 6736936 -95136233 + AT_rich Low_complexity Low_complexity 1 28 0 1843 150 37 0 chr13 6736941 6737235 -95135934 + AluSx SINE Alu 7 311 -1 1755 143 57 4 chr13 6737357 6737637 -95135532 - AluJo SINE Alu -16 296 2 649 173 7 115 chr13 6737660 6737799 -95135370 - FLAM_C SINE Alu -18 125 2 721 218 100 66 chr13 6737845 6738226 -95134943 - L1MC5 LINE L1 -285 7676 7283 2357 68 0 39 chr13 6738349 6738658 -95134511 - AluY SINE Alu -14 297 1 1812 155 4 0 chr13 6738699 6738996 -95134173 + AluJb SINE Alu 5 302 0 399 217 0 0 chr13 6739180 6739286 -95133883 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 632 282 160 29 chr13 6739289 6739601 -95133568 + MER115 DNA AcHobo 54 406 -287 780 202 5 72 chr13 6739618 6739811 -95133358 + MER115 DNA AcHobo 514 693 0 1751 57 17 26 chr13 6740366 6740596 -95132573 + AluY SINE Alu 83 310 -1 882 200 24 29 chr13 6741043 6741213 -95131956 - FRAM SINE Alu -10 166 1 21 0 0 0 chr13 6741606 6741627 -95131542 + AT_rich Low_complexity Low_complexity 1 21 0 546 284 62 8 chr13 6741896 6742153 -95131016 + L2 LINE L2 2010 2280 -1034 1688 147 34 4 chr13 6742183 6742448 -95130721 - AluJb SINE Alu -39 273 1 1238 274 43 29 chr13 6742448 6743156 -95130013 - L1ME LINE L1 -4823 1257 536 786 316 41 64 chr13 6743300 6743831 -95129338 - L1ME LINE L1 -5539 531 13 21 0 0 0 chr13 6744020 6744041 -95129128 + AT_rich Low_complexity Low_complexity 1 21 0 1840 171 0 3 chr13 6744046 6744345 -95128824 + AluJb SINE Alu 1 298 -14 430 219 57 19 chr13 6744475 6744580 -95128589 + MLT1J2 LTR MaLR 3 111 -339 447 292 105 28 chr13 6744642 6744840 -95128329 + MLT1J2 LTR MaLR 238 448 -2 671 209 95 0 chr13 6745219 6745367 -95127802 + L1PA16 LINE L1 5999 6160 -6 1069 61 30 0 chr13 6745571 6745702 -95127467 - AluYb8 SINE Alu -183 135 1 1208 167 23 0 chr13 6745751 6745967 -95127202 - L1MA4 LINE L1 -5 6295 6075 982 211 22 64 chr13 6746030 6746355 -95126814 - L1MB7 LINE L1 0 6321 6032 2179 91 66 90 chr13 6746726 6747132 -95126037 + LTR14B LTR ERVK 1 608 0 446 255 0 0 chr13 6747132 6747230 -95125939 - MIR SINE MIR -106 156 59 535 239 92 0 chr13 6747323 6747453 -95125716 - MIR SINE MIR -65 197 56 1551 191 26 26 chr13 6749311 6749620 -95123549 + AluJo SINE Alu 2 310 -2 204 309 0 15 chr13 6749635 6749703 -95123466 - MIR3 SINE MIR -32 176 110 344 208 78 0 chr13 6749776 6749853 -95123316 - MIR SINE MIR -60 148 66 1803 171 0 17 chr13 6749990 6750283 -95122886 - AluJo SINE Alu -24 288 1 22 0 0 0 chr13 6750702 6750724 -95122445 + AT_rich Low_complexity Low_complexity 1 22 0 384 262 72 42 chr13 6750833 6751373 -95121796 + L1MC/D LINE L1 4934 5483 -750 931 145 14 0 chr13 6751395 6751540 -95121629 + FAM SINE Alu 28 174 -11 1070 89 0 7 chr13 6751598 6751733 -95121436 - AluSq/x SINE Alu -179 134 1 904 136 80 2 chr13 6751844 6752114 -95121055 - MER1B DNA MER1_type -2 337 1 1199 111 0 0 chr13 6752856 6753018 -95120151 + FRAM SINE Alu 1 162 -14 543 186 73 8 chr13 6753220 6753344 -95119825 - L1MB4 LINE L1 -1 6179 6048 2111 113 26 26 chr13 6753801 6754111 -95119058 + AluSg SINE Alu 1 310 0 332 266 165 13 chr13 6754271 6754429 -95118740 - MIR SINE MIR -79 183 2 256 231 37 74 chr13 6754445 6754553 -95118616 - L1MB4 LINE L1 -2330 5478 5375 1632 162 7 4 chr13 6754576 6754847 -95118322 - AluJb SINE Alu -40 272 1 819 118 8 8 chr13 6754855 6754974 -95118195 - FLAM_C SINE Alu -19 124 6 269 274 94 9 chr13 6757135 6757241 -95115928 - L2 LINE L2 -1 3271 3157 885 234 84 5 chr13 6757483 6757697 -95115472 - L1ME1 LINE L1 -8 6158 5928 23 33 0 0 chr13 6758006 6758036 -95115133 + AT_rich Low_complexity Low_complexity 1 30 0 1239 159 22 137 chr13 6758345 6758756 -95114413 + LTR49 LTR ERV1 1 485 -254 335 174 181 87 chr13 6758779 6758917 -95114252 + LTR48 LTR ERV1 607 757 -30 2230 228 74 54 chr13 6758994 6759640 -95113529 + MER21B LTR ERV1 98 756 -107 1508 91 106 0 chr13 6760071 6760279 -95112890 + MER30 DNA MER1_type 1 230 0 2167 110 0 0 chr13 6761025 6761336 -95111833 - AluSx SINE Alu 0 311 1 929 157 7 0 chr13 6761444 6761591 -95111578 + L1MB4 LINE L1 5333 5480 -694 1368 172 38 48 chr13 6761600 6761891 -95111278 + AluJb SINE Alu 1 288 -24 914 207 0 0 chr13 6761944 6762108 -95111061 + FRAM SINE Alu 8 171 -5 3917 167 34 1 chr13 6762132 6762782 -95110387 + L1MB4 LINE L1 5477 6151 -29 2516 69 0 0 chr13 6762782 6763085 -95110084 + AluY SINE Alu 1 303 -8 3917 167 34 1 chr13 6763085 6763112 -95110057 + L1MB4 LINE L1 6151 6176 -4 861 233 0 0 chr13 6764552 6764715 -95108454 - FRAM SINE Alu -3 163 1 730 192 98 39 chr13 6765769 6765972 -95107197 - MIR SINE MIR -43 219 5 2277 115 0 3 chr13 6766605 6766910 -95106259 - AluSx SINE Alu -7 305 2 195 129 0 0 chr13 6766911 6766942 -95106227 + (T)n Simple_repeat Simple_repeat 1 31 0 248 236 115 54 chr13 6766982 6767130 -95106039 + L1ME4a LINE L1 5964 6120 -1 2035 96 67 3 chr13 6767508 6767790 -95105379 + AluSx SINE Alu 1 300 -12 791 281 19 27 chr13 6768323 6768586 -95104583 - MIR SINE MIR 0 262 2 234 0 0 0 chr13 6769156 6769182 -95103987 + (TA)n Simple_repeat Simple_repeat 2 27 0 1954 163 0 16 chr13 6769285 6769598 -95103571 - AluJo SINE Alu -4 308 1 1945 103 59 7 chr13 6770308 6770623 -95102546 + AluSq SINE Alu 1 313 0 504 221 27 40 chr13 6770940 6771089 -95102080 + MLT1H LTR MaLR 22 168 -381 2262 103 3 0 chr13 6771176 6771476 -95101693 + AluSx SINE Alu 12 312 0 262 184 447 0 chr13 6771527 6771630 -95101539 + HAL1 LINE L1 1290 1438 -1069 792 246 111 47 chr13 6771650 6771663 -95101506 + HAL1 LINE L1 2075 2086 -421 1594 184 16 44 chr13 6771663 6771785 -95101384 + AluJb SINE Alu 1 125 -187 2559 63 0 0 chr13 6771785 6772084 -95101085 - AluY SINE Alu -12 299 1 1594 184 16 44 chr13 6772084 6772281 -95100888 + AluJb SINE Alu 125 311 -1 792 246 111 47 chr13 6772281 6772674 -95100495 + HAL1 LINE L1 2086 2507 0 294 29 0 0 chr13 6773208 6773243 -95099926 + (CA)n Simple_repeat Simple_repeat 2 36 0 397 286 37 37 chr13 6773246 6773407 -95099762 + L1ME4a LINE L1 5941 6101 -20 1394 202 80 3 chr13 6774355 6774642 -95098527 - AluJb SINE Alu -3 309 1 341 252 310 7 chr13 6775038 6775193 -95097976 + L1MCc LINE L1 13 214 -6209 2357 255 108 65 chr13 6775206 6776384 -95096785 + L1MCc LINE L1 303 1531 -4892 1759 259 86 25 chr13 6776400 6777189 -95095980 + L1MCc LINE L1 1751 2587 -4535 9935 101 15 0 chr13 6777191 6779457 -95093712 + L1PA10 LINE L1 3859 6158 -10 316 128 88 49 chr13 6779575 6779677 -95093492 + L1MCc LINE L1 2685 2790 -4332 411 206 57 4 chr13 6779677 6779823 -95093346 + MER3 DNA MER1_type 1 203 -6 1963 151 14 0 chr13 6779864 6780156 -95093013 - AluJb SINE Alu -16 296 1 2156 120 10 16 chr13 6780188 6780496 -95092673 + AluSx SINE Alu 1 306 -6 709 229 47 17 chr13 6780497 6780733 -95092436 + L1MCc LINE L1 2825 3067 -4055 894 206 0 0 chr13 6781115 6781275 -95091894 - FRAM SINE Alu -5 161 2 2355 106 3 0 chr13 6782076 6782379 -95090790 - AluSq SINE Alu -9 304 1 601 177 77 23 chr13 6783154 6783284 -95089885 - FLAM_C SINE Alu -5 138 2 459 273 62 24 chr13 6785507 6785716 -95087453 - MIR SINE MIR -38 224 8 266 210 0 32 chr13 6785719 6785781 -95087388 + tRNA-Gln-CAG tRNA tRNA 5 64 -11 249 322 74 0 chr13 6785798 6785919 -95087250 + MIR SINE MIR 110 239 -23 186 231 93 46 chr13 6786312 6786420 -95086749 + L2 LINE L2 1429 1541 -1773 1549 132 30 117 chr13 6786567 6786900 -95086269 - AluJb SINE Alu -8 304 1 196 241 0 0 chr13 6786991 6787045 -95086124 + MIR SINE MIR 204 257 -5 823 278 304 5 chr13 6787198 6788001 -95085168 + L2 LINE L2 1587 2629 -685 746 264 104 13 chr13 6788073 6788391 -95084778 + LTR16A LTR ERVL 104 450 0 1093 271 59 23 chr13 6788415 6789036 -95084133 + L2 LINE L2 2668 3308 -5 1798 176 0 7 chr13 6789467 6789762 -95083407 - AluJb SINE Alu -19 293 1 762 159 0 23 chr13 6789808 6789940 -95083229 - FLAM_A SINE Alu 0 142 14 194 313 150 7 chr13 6790547 6790694 -95082475 - MIR SINE MIR -74 188 21 1500 172 84 4 chr13 6790873 6791146 -95082023 + AluJo SINE Alu 1 295 -17 1933 156 10 3 chr13 6792114 6792409 -95080760 - AluJo SINE Alu -15 297 1 2413 82 117 107 chr13 6793104 6793855 -95079314 + pTR5 LTR ERV1 13 2435 -3 13629 107 17 79 chr13 6793855 6795086 -95078083 + Tigger1 DNA MER2_type 232 1538 -880 2440 94 3 0 chr13 6795086 6795394 -95077775 + AluSq SINE Alu 1 309 -4 13629 107 17 79 chr13 6795394 6795412 -95077757 + Tigger1 DNA MER2_type 1538 1556 -862 543 194 56 76 chr13 6795412 6795556 -95077613 + FRAM SINE Alu 20 160 -16 13629 107 17 79 chr13 6795556 6796494 -95076675 + Tigger1 DNA MER2_type 1556 2418 0 386 315 40 0 chr13 6796534 6796683 -95076486 - L1ME3A LINE L1 -310 5860 5706 1477 198 3 43 chr13 6796684 6796880 -95076289 - AluJo SINE Alu -2 310 131 2842 20 0 0 chr13 6796880 6797185 -95075984 + AluYb8 SINE Alu 1 305 -13 1477 198 3 43 chr13 6797185 6797311 -95075858 - AluJo SINE Alu -181 131 1 2127 125 0 3 chr13 6797313 6797602 -95075567 - AluSx SINE Alu -24 288 1 328 245 8 12 chr13 6797610 6797728 -95075441 - L1ME3A LINE L1 -803 5343 5245 240 284 25 12 chr13 6797728 6797809 -95075360 + MIR SINE MIR 48 129 -133 1708 155 4 25 chr13 6797869 6798147 -95075022 - AluJo SINE Alu -39 273 2 230 257 64 36 chr13 6798706 6798846 -95074323 - L1ME3A LINE L1 -1081 5065 4922 291 258 120 60 chr13 6798951 6799118 -95074051 - L1ME3A LINE L1 -1421 4725 4549 22 56 0 19 chr13 6799509 6799541 -95073628 + AT_rich Low_complexity Low_complexity 1 33 -20 742 186 0 0 chr13 6799541 6799659 -95073510 - FLAM_C SINE Alu -15 118 1 22 56 0 19 chr13 6799659 6799680 -95073489 + AT_rich Low_complexity Low_complexity 33 53 0 278 297 38 38 chr13 6800040 6800279 -95072890 + L1ME4a LINE L1 5714 5952 -169 2055 115 0 33 chr13 6800345 6800649 -95072520 + AluSx SINE Alu 1 294 -18 2310 92 7 0 chr13 6800655 6800950 -95072219 + AluSc SINE Alu 1 297 -12 206 186 0 0 chr13 6800996 6801039 -95072130 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 6801352 6801492 -95071677 - MER63 DNA MER1_type -276 786 5 434 148 70 120 chr13 6801535 6801677 -95071492 + L1ME4a LINE L1 5985 6119 -2 2161 122 0 0 chr13 6802042 6802329 -95070840 - AluSx SINE Alu -25 287 1 3183 177 71 38 chr13 6802335 6803003 -95070166 - L1MB5 LINE L1 0 6174 5480 2399 78 3 3 chr13 6803003 6803311 -95069858 + AluY SINE Alu 1 308 -3 3183 177 71 38 chr13 6803311 6803350 -95069819 - L1MB5 LINE L1 -694 5480 5444 451 216 85 65 chr13 6803500 6803653 -95069516 + MER63A DNA MER1_type 53 208 -2 21 0 0 0 chr13 6804086 6804107 -95069062 + AT_rich Low_complexity Low_complexity 1 21 0 688 185 23 0 chr13 6804616 6804746 -95068423 - FRAM SINE Alu -8 168 36 2217 112 10 3 chr13 6804798 6805094 -95068075 - AluSq SINE Alu -15 298 1 444 300 206 26 chr13 6805400 6805827 -95067342 + MLT1L LTR MaLR 106 609 -6 1690 174 14 3 chr13 6807874 6808168 -95065001 - AluJo SINE Alu -15 297 1 2028 135 22 19 chr13 6808535 6808846 -95064323 - AluSx SINE Alu 0 312 1 2372 99 0 0 chr13 6810418 6810720 -95062449 + AluSg SINE Alu 1 302 -8 192 271 115 42 chr13 6811004 6811100 -95062069 + L2 LINE L2 3150 3252 -20 1889 176 32 26 chr13 6811308 6811688 -95061481 + MLT1B LTR MaLR 1 382 -8 432 168 74 60 chr13 6811976 6812125 -95061044 - L1ME4a LINE L1 -9 6112 5962 612 170 10 0 chr13 6812282 6812382 -95060787 - FLAM_A SINE Alu -22 120 20 791 132 47 23 chr13 6812694 6812823 -95060346 + AluJo SINE Alu 3 134 -178 181 278 56 0 chr13 6813406 6813460 -95059709 + MIR3 SINE MIR 100 156 -52 21 36 0 0 chr13 6813714 6813742 -95059427 + AT_rich Low_complexity Low_complexity 1 28 0 334 294 109 0 chr13 6815740 6815859 -95057310 - L1ME LINE L1 -379 5742 5611 628 188 103 0 chr13 6815888 6816005 -95057164 - FLAM_C SINE Alu -11 132 4 29 0 0 0 chr13 6816006 6816035 -95057134 + AT_rich Low_complexity Low_complexity 1 29 0 256 266 0 0 chr13 6816728 6816792 -95056377 + MIR3 SINE MIR 138 201 -7 1996 106 84 3 chr13 6817980 6818264 -95054905 - AluSg SINE Alu -3 307 1 1976 141 7 3 chr13 6818379 6818669 -95054500 - AluSx SINE Alu -20 292 2 596 133 95 0 chr13 6818679 6818784 -95054385 - AluSg/x SINE Alu -12 297 183 2556 115 4 117 chr13 6818789 6819294 -95053875 - LTR46 LTR ERV1 -11 449 2 977 87 0 8 chr13 6819295 6819422 -95053747 - AluSg/x SINE Alu -103 209 84 3961 126 153 93 chr13 6819718 6821016 -95052153 - pTR5 LTR ERV1 0 2438 738 740 235 161 29 chr13 6822042 6822198 -95050971 - L1ME4a LINE L1 -16 6105 5971 2114 120 7 0 chr13 6822198 6822489 -95050680 - AluSq SINE Alu -20 293 1 740 235 161 29 chr13 6822489 6822778 -95050391 - L1ME4a LINE L1 -150 5971 5601 403 190 21 92 chr13 6822828 6822900 -95050269 + L1MB8 LINE L1 6044 6103 -75 1944 166 10 0 chr13 6822900 6823202 -95049967 + AluJb SINE Alu 1 305 -7 403 190 21 92 chr13 6823202 6823271 -95049898 + L1MB8 LINE L1 6103 6175 -3 446 239 89 111 chr13 6823331 6823375 -95049794 - L1ME4a LINE L1 -81 6040 5997 2250 100 10 3 chr13 6823375 6823675 -95049494 - AluSx SINE Alu -10 302 1 446 239 89 111 chr13 6823675 6823948 -95049221 - L1ME4a LINE L1 -124 5997 5734 2752 20 0 0 chr13 6823948 6824247 -95048922 + AluYa5 SINE Alu 1 299 -12 446 239 89 111 chr13 6824247 6824389 -95048780 - L1ME4a LINE L1 -387 5734 5590 340 67 0 100 chr13 6824403 6824463 -95048706 - L1MB3 LINE L1 -52 6131 6078 1582 156 45 24 chr13 6824474 6824763 -95048406 - AluJb SINE Alu -17 295 1 968 211 12 40 chr13 6827125 6827447 -95045722 + L1M4 LINE L1 972 1284 -5258 * 5151 145 8 4 chr13 6827421 6828240 -95044929 + L1PA16 LINE L1 5833 6655 -9 2246 188 39 79 chr13 6828250 6828357 -95044812 + L1M4 LINE L1 1255 1365 -5281 1910 157 26 7 chr13 6828357 6828663 -95044506 + AluJo SINE Alu 1 312 0 2246 188 39 79 chr13 6828663 6829240 -95043929 + L1M4 LINE L1 1365 1912 -4734 1879 164 7 0 chr13 6829242 6829529 -95043640 + AluJb SINE Alu 1 289 -23 893 168 62 19 chr13 6830091 6830252 -95042917 - AluJo/FRAM SINE Alu -11 301 134 432 234 52 0 chr13 6830255 6830332 -95042837 - AluJ/FLAM SINE Alu -230 82 2 1740 132 4 0 chr13 6830398 6830640 -95042529 + AluSx SINE Alu 1 243 -69 1980 121 7 4 chr13 6830949 6831271 -95041898 + AluSx SINE Alu 1 323 0 714 198 8 0 chr13 6831815 6831936 -95041233 - FLAM_A SINE Alu -7 126 5 354 23 0 0 chr13 6831961 6832004 -95041165 + (TG)n Simple_repeat Simple_repeat 2 44 0 1927 152 3 7 chr13 6832014 6832317 -95040852 - AluSx SINE Alu -10 302 1 599 162 0 81 chr13 6832423 6832559 -95040610 - L1PA10 LINE L1 0 6168 6044 1526 163 22 18 chr13 6832562 6832839 -95040330 - LTR14B LTR ERVK -23 585 308 289 262 50 41 chr13 6835980 6836234 -95036935 + ALR/Alpha Satellite centromeric 1 256 0 2546 68 0 0 chr13 6836435 6836745 -95036424 + AluY SINE Alu 1 310 -1 28 0 0 47 chr13 6838725 6838752 -95034417 + AT_rich Low_complexity Low_complexity 1 27 -14 2242 100 0 3 chr13 6838752 6839041 -95034128 - AluY SINE Alu -23 288 1 28 0 0 47 chr13 6839041 6839056 -95034113 + AT_rich Low_complexity Low_complexity 27 41 0 2697 17 0 0 chr13 6841863 6842156 -95031013 - AluYa5 SINE Alu -18 293 1 3105 180 50 41 chr13 6842158 6842864 -95030305 + LTR8A LTR ERV1 16 727 0 486 308 35 0 chr13 6843730 6843902 -95029267 + L1PA16 LINE L1 2467 2644 -3502 * 941 165 88 0 chr13 6843901 6844083 -95029086 - L1PA15-16 LINE L1 -3932 2917 2720 10680 205 24 8 chr13 6844084 6847533 -95025636 + L1PA16 LINE L1 2658 6165 -1 258 32 0 0 chr13 6847570 6847601 -95025568 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1575 259 25 0 chr13 6847623 6848029 -95025140 - L1M4 LINE L1 -940 5206 4791 257 132 0 38 chr13 6848613 6848666 -95024503 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 360 0 0 0 chr13 6848729 6848769 -95024400 + (TG)n Simple_repeat Simple_repeat 1 40 0 408 248 31 47 chr13 6849214 6849343 -95023826 + MLT1D LTR MaLR 343 469 -36 21 0 0 0 chr13 6849758 6849779 -95023390 + AT_rich Low_complexity Low_complexity 1 21 0 258 227 108 70 chr13 6849893 6850179 -95022990 - L1M4 LINE L1 -2866 3280 2984 1372 209 100 6 chr13 6850235 6850555 -95022614 + MLT1D LTR MaLR 156 505 0 218 207 244 0 chr13 6851246 6851328 -95021841 - MIR SINE MIR -71 137 36 396 0 0 0 chr13 6852272 6852316 -95020853 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 290 139 23 chr13 6852948 6853096 -95020073 + MIR SINE MIR 5 142 -66 188 175 25 0 chr13 6853941 6853981 -95019188 + MIR SINE MIR 105 145 -63 1066 96 12 0 chr13 6856334 6856500 -95016669 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 3481 66 26 18 chr13 6856500 6856956 -95016213 - L1PA7 LINE L1 -13 6141 5682 227 351 115 20 chr13 6857665 6858013 -95015156 + L1ME LINE L1 5504 5884 -237 26 0 0 0 chr13 6858417 6858443 -95014726 + AT_rich Low_complexity Low_complexity 1 26 0 603 234 28 0 chr13 6858821 6858966 -95014203 - L1PA16 LINE L1 0 6166 6018 4133 154 16 25 chr13 6859198 6859390 -95013779 - L1MA3 LINE L1 0 6305 6113 189 0 0 0 chr13 6859390 6859411 -95013758 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2326 59 0 3 chr13 6859411 6859697 -95013472 - AluY SINE Alu -26 285 1 4133 154 16 25 chr13 6859697 6860267 -95012902 - L1MA3 LINE L1 -190 6115 5549 198 0 0 0 chr13 6861203 6861225 -95011944 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 767 188 0 0 chr13 6861989 6862106 -95011063 + FLAM_A SINE Alu 1 117 -16 43801 47 7 2 chr13 6862107 6867702 -95005467 - L1PA4 LINE L1 0 6155 590 180 0 0 0 chr13 6867702 6867722 -95005447 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 43801 47 7 2 chr13 6867722 6868241 -95004928 - L1PA4 LINE L1 -5565 590 8 8956 51 5 0 chr13 6868241 6869243 -95003926 - LTR13 LTR ERVK 0 1007 1 382 348 18 0 chr13 6870877 6870989 -95002180 - L2 LINE L2 -259 3054 2941 195 167 48 24 chr13 6872762 6872804 -95000365 + MER5A DNA MER1_type 43 85 -104 * 361 211 156 0 chr13 6872788 6872878 -95000291 - MER5A DNA MER1_type -77 112 9 5186 109 142 131 chr13 6873409 6874955 -94998214 - pTR5 LTR ERV1 0 2438 741 297 0 0 0 chr13 6876619 6876652 -94996517 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 188 21 0 chr13 6877151 6877247 -94995922 - Charlie1 DNA MER1_type -45 2716 2619 986 201 25 0 chr13 6878713 6878917 -94994252 + AluJb SINE Alu 97 305 -7 1125 94 0 0 chr13 6879254 6879392 -94993777 + AluSq/x SINE Alu 1 138 -175 266 187 0 10 chr13 6879420 6879479 -94993690 - Alu SINE Alu -13 289 248 1620 184 24 3 chr13 6880943 6881237 -94991932 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 6881674 6881697 -94991472 + AT_rich Low_complexity Low_complexity 1 23 0 2075 65 11 8 chr13 6884801 6885061 -94988108 - AluSg1 SINE Alu -14 295 35 22 0 0 0 chr13 6885071 6885093 -94988076 + AT_rich Low_complexity Low_complexity 1 22 0 1094 88 0 0 chr13 6885093 6885240 -94987929 - AluY SINE Alu -8 303 157 588 306 95 6 chr13 6885277 6885636 -94987533 + L1M4 LINE L1 4549 4939 -1207 453 221 0 23 chr13 6885636 6885722 -94987447 + MER21B LTR ERV1 1 84 -779 207 0 0 0 chr13 6885914 6885937 -94987232 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2054 111 0 10 chr13 6885937 6886226 -94986943 - AluSx SINE Alu -26 286 1 948 185 83 0 chr13 6886454 6886659 -94986510 - MER99 DNA DNA -271 557 336 2159 103 0 30 chr13 6886660 6886961 -94986208 - AluSq SINE Alu -21 292 1 1116 130 36 36 chr13 6887276 6887468 -94985701 - AluJb SINE Alu -120 192 1 401 185 193 8 chr13 6887468 6887587 -94985582 - L1MB8 LINE L1 -269 5909 5769 5353 118 48 62 chr13 6887598 6888085 -94985084 - L1MA4A LINE L1 -1 6302 5810 180 0 0 0 chr13 6888085 6888105 -94985064 + (TA)n Simple_repeat Simple_repeat 2 21 0 5353 118 48 62 chr13 6888105 6888155 -94985014 - L1MA4A LINE L1 -493 5810 5761 2247 100 0 31 chr13 6888155 6888474 -94984695 - AluSg1 SINE Alu 0 309 1 5353 118 48 62 chr13 6888474 6888926 -94984243 - L1MA4A LINE L1 -542 5761 5304 230 56 28 0 chr13 6888926 6888962 -94984207 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2043 119 11 3 chr13 6888962 6889247 -94983922 - AluSq SINE Alu -26 287 1 5387 146 36 4 chr13 6889247 6890338 -94982831 - L1 LINE L1 -3764 3084 1956 2041 151 3 0 chr13 6890338 6890642 -94982527 - AluSx SINE Alu -7 305 1 5387 146 36 4 chr13 6890642 6890667 -94982502 - L1 LINE L1 -4892 1956 1933 5902 107 20 31 chr13 6890911 6891827 -94981342 - L1PA15 LINE L1 -6 6159 5254 1382 115 0 21 chr13 6891839 6892031 -94981138 - AluSg SINE Alu -94 216 29 10271 150 22 17 chr13 6892031 6892506 -94980663 - L1PA15-16 LINE L1 -3489 3360 2889 561 30 0 0 chr13 6892506 6892573 -94980596 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1867 157 4 0 chr13 6892573 6892847 -94980322 - AluSc SINE Alu -34 275 1 10271 150 22 17 chr13 6892847 6894415 -94978754 - L1PA15-16 LINE L1 -3959 2890 1305 2519 157 15 0 chr13 6894421 6894823 -94978346 - L1PA15-16 LINE L1 -6437 412 5 238 291 118 52 chr13 6894821 6895151 -94978018 - L1M4 LINE L1 -2316 3830 3479 * 654 156 0 0 chr13 6895162 6895258 -94977911 + AluSg/x SINE Alu 201 296 -13 622 194 119 12 chr13 6895605 6895765 -94977404 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 6896290 6896413 -94976756 - MER112 DNA MER1_type 0 260 139 530 245 24 53 chr13 6896497 6896709 -94976460 + MIR3 SINE MIR 13 208 0 1950 125 0 11 chr13 6896768 6897047 -94976122 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 6897054 6897077 -94976092 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 369 0 0 0 chr13 6897701 6897742 -94975427 + (TG)n Simple_repeat Simple_repeat 2 42 0 222 282 103 0 chr13 6897817 6897895 -94975274 - MIR SINE MIR -29 233 148 807 206 52 134 chr13 6897925 6898479 -94974690 - L1MC5 LINE L1 -48 7913 7405 424 221 107 25 chr13 6898479 6898601 -94974568 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 6898879 6898903 -94974266 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr13 6899947 6899972 -94973197 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2012 123 0 0 chr13 6899975 6900252 -94972917 - AluSx SINE Alu -25 287 11 204 362 79 0 chr13 6902013 6902140 -94971029 + L3b LINE CR1 1125 1261 -322 2096 134 26 10 chr13 6902341 6902648 -94970521 - AluSx SINE Alu 0 312 1 621 310 16 5 chr13 6903393 6903580 -94969589 - MER5A DNA MER1_type 0 189 1 258 243 153 9 chr13 6904340 6904451 -94968718 + MIR SINE MIR 81 207 -55 707 163 16 16 chr13 6904772 6904895 -94968274 - AluJ SINE Alu 0 312 190 273 140 0 0 chr13 6904899 6904949 -94968220 - AluJ SINE Alu -169 133 84 869 201 106 15 chr13 6904949 6905054 -94968115 - AluSp SINE Alu -95 218 124 1517 114 5 9 chr13 6905054 6905273 -94967896 - AluSc SINE Alu -5 304 87 5666 123 54 21 chr13 6905275 6906213 -94966956 + LTR5 LTR ERVK 1 969 0 869 201 106 15 chr13 6906213 6906303 -94966866 - AluSp SINE Alu -189 124 2 2325 107 0 0 chr13 6907088 6907387 -94965782 + AluSc SINE Alu 1 299 -10 1572 190 17 3 chr13 6907439 6907728 -94965441 + AluSx SINE Alu 1 293 -19 353 45 0 0 chr13 6907745 6907789 -94965380 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 231 39 13 chr13 6908279 6908357 -94964812 + A-rich Low_complexity Low_complexity 4 83 0 946 107 0 0 chr13 6908427 6908548 -94964621 - FRAM SINE Alu -28 148 28 3106 181 51 7 chr13 6908548 6909140 -94964029 + MER54A LTR ERVL 284 901 0 907 58 117 0 chr13 6910597 6910717 -94962452 - MER85 DNA T2_type -2 137 4 208 206 32 0 chr13 6911293 6911356 -94961813 + (TA)n Simple_repeat Simple_repeat 1 65 0 1683 193 3 10 chr13 6912085 6912396 -94960773 - AluJb SINE Alu -3 309 1 14267 230 40 30 chr13 6913546 6914581 -94958588 - L1PA16 LINE L1 -9 7595 6572 2444 68 3 0 chr13 6914581 6914877 -94958292 + AluY SINE Alu 3 299 -12 14267 230 40 30 chr13 6914877 6916358 -94956811 - L1PA16 LINE L1 -1032 6572 5107 2223 105 0 20 chr13 6916358 6916664 -94956505 - AluY SINE Alu -11 300 1 14267 230 40 30 chr13 6916664 6917896 -94955273 - L1PA16 LINE L1 -2497 5107 3889 2233 97 0 3 chr13 6917896 6918184 -94954985 + AluY SINE Alu 3 289 -22 14267 230 40 30 chr13 6918184 6921360 -94951809 - L1PA16 LINE L1 -3715 3889 8 2232 94 0 16 chr13 6921536 6921844 -94951325 + AluY SINE Alu 3 305 -6 718 137 0 10 chr13 6922031 6922133 -94951036 - AluS SINE Alu -211 102 2 2431 94 0 0 chr13 6922293 6922601 -94950568 - AluSg SINE Alu -2 308 1 378 221 0 0 chr13 6925128 6925223 -94947946 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 494 308 43 84 chr13 6925236 6925606 -94947563 + L2 LINE L2 2917 3271 -1 180 0 0 0 chr13 6929383 6929403 -94943766 + (A)n Simple_repeat Simple_repeat 1 20 0 195 180 213 0 chr13 6930179 6930240 -94942929 - MER5A DNA MER1_type -106 83 10 256 289 55 47 chr13 6930359 6930487 -94942682 - L2 LINE L2 -941 2373 2245 2169 110 0 0 chr13 6930656 6930946 -94942223 + AluSx SINE Alu 21 310 -2 295 311 57 0 chr13 6932193 6932318 -94940851 + MIR SINE MIR 20 150 -63 206 116 47 23 chr13 6933074 6933095 -94940074 + (TTCTG)n Simple_repeat Simple_repeat 2 21 -24 1416 172 15 78 chr13 6933095 6933427 -94939742 - AluJo SINE Alu -1 311 1 206 116 47 23 chr13 6933427 6933448 -94939721 + (TTCTG)n Simple_repeat Simple_repeat 21 45 0 1387 96 0 5 chr13 6933735 6933923 -94939246 - AluY SINE Alu -124 187 1 2239 148 5 8 chr13 6933923 6934301 -94938868 - L1MA4 LINE L1 -246 6054 5678 620 184 15 22 chr13 6934354 6934490 -94938679 + Ricksha DNA DNA 1 135 -1119 2207 177 33 5 chr13 6934542 6934909 -94938260 + Ricksha DNA DNA 308 684 -2562 259 258 103 21 chr13 6934836 6934933 -94938236 + MLT2D LTR ERVL 321 425 -128 * 2096 138 41 141 chr13 6934932 6935194 -94937975 + Ricksha DNA DNA 2641 2928 -323 2032 113 10 3 chr13 6935194 6935495 -94937674 - AluSq SINE Alu -10 303 1 2096 138 41 141 chr13 6935495 6935578 -94937591 + Ricksha DNA DNA 2928 3018 -233 2315 66 0 3 chr13 6935578 6935880 -94937289 - AluY SINE Alu -10 301 1 2096 138 41 141 chr13 6935880 6936071 -94937098 + Ricksha DNA DNA 3018 3124 -127 4153 128 105 54 chr13 6936101 6936883 -94936286 - LTR12 LTR ERV1 0 826 5 1609 208 16 43 chr13 6936916 6937354 -94935815 + pTR5 LTR ERV1 802 1227 -1211 4797 111 25 98 chr13 6937382 6938269 -94934900 + LTR12 LTR ERV1 5 826 0 384 220 189 8 chr13 6938937 6939069 -94934100 + L2 LINE L2 3115 3270 -43 1453 148 38 6 chr13 6939074 6939510 -94933659 + LTR54 LTR ERV1 1 510 0 243 173 0 0 chr13 6939541 6939593 -94933576 + GA-rich Low_complexity Low_complexity 2 53 0 407 320 47 6 chr13 6939697 6939868 -94933301 + MIR SINE MIR 16 193 -63 360 353 59 13 chr13 6940508 6940746 -94932423 + MIR SINE MIR 6 254 -8 476 251 134 27 chr13 6941849 6942072 -94931097 + MLT1J1 LTR MaLR 189 435 -11 1338 188 112 65 chr13 6942198 6942628 -94930541 + LTR7 LTR ERV1 1 450 0 2252 99 0 3 chr13 6942753 6943067 -94930102 - AluSq SINE Alu 0 313 1 293 283 41 69 chr13 6943873 6944018 -94929151 - MIR3 SINE MIR -28 180 40 237 266 31 16 chr13 6944123 6944187 -94928982 + MIR SINE MIR 89 153 -109 3937 113 4 11 chr13 6944821 6945148 -94928021 + MER41A LTR ERV1 1 324 -230 2182 107 0 0 chr13 6945148 6945446 -94927723 + AluSg SINE Alu 1 298 -12 3937 113 4 11 chr13 6945446 6945676 -94927493 + MER41A LTR ERV1 324 554 0 548 254 55 55 chr13 6945755 6945956 -94927213 + MIR SINE MIR 48 248 -14 297 252 179 0 chr13 6946119 6946242 -94926927 - MIR SINE MIR -71 191 47 685 272 44 44 chr13 6946420 6946670 -94926499 - MIR SINE MIR -12 250 1 420 227 144 57 chr13 6946908 6947102 -94926067 + L1MEd LINE L1 3 213 -5906 243 265 108 12 chr13 6947273 6947356 -94925813 + L1MEd LINE L1 464 554 -5565 801 183 0 21 chr13 6947358 6947500 -94925669 - FLAM_C SINE Alu -3 140 2 366 266 9 0 chr13 6947589 6947698 -94925471 + L1MEd LINE L1 671 780 -5339 336 265 204 6 chr13 6947732 6947894 -94925275 + L1MEd LINE L1 1064 1257 -4862 2313 71 0 37 chr13 6947913 6948236 -94924933 - AluY SINE Alu 0 311 1 1892 135 30 0 chr13 6948401 6948697 -94924472 + AluSq SINE Alu 9 313 0 780 149 0 0 chr13 6948728 6948849 -94924320 + FLAM_C SINE Alu 10 130 -13 1778 173 0 3 chr13 6949530 6949836 -94923333 - AluJb SINE Alu -7 305 1 805 127 16 0 chr13 6949935 6950061 -94923108 - FLAM_C SINE Alu -4 139 12 2072 34 52 4 chr13 6951004 6951317 -94921852 + AluY SINE Alu 1 326 0 1532 98 9 0 chr13 6952307 6952521 -94920648 - MER4E LTR ERV1 0 766 551 313 44 0 22 chr13 6952516 6952561 -94920608 - MER4E LTR ERV1 -735 44 1 * 1548 191 65 9 chr13 6953145 6953470 -94919699 - MER61A LTR ERV1 0 343 1 2443 61 3 13 chr13 6953560 6953873 -94919296 + AluY SINE Alu 1 310 -1 1900 108 14 21 chr13 6954001 6954287 -94918882 - MER61A-int LTR ERV1 -108 6650 6367 8673 126 55 38 chr13 6954387 6954566 -94918603 - MER61A-int LTR ERV1 -761 5997 5823 2088 122 3 0 chr13 6954566 6954862 -94918307 + AluSx SINE Alu 1 297 -15 8673 126 55 38 chr13 6954862 6956201 -94916968 - MER61A-int LTR ERV1 -935 5823 4452 3639 128 44 9 chr13 6956203 6956766 -94916403 - MER61A-int LTR ERV1 -2673 4085 3503 4133 117 73 22 chr13 6956803 6957608 -94915561 - MER61A-int LTR ERV1 -3666 3092 2247 3920 95 4 2 chr13 6957608 6958126 -94915043 + MER41A LTR ERV1 1 519 -35 1585 146 0 24 chr13 6958126 6958380 -94914789 - AluJb SINE Alu -58 254 7 403 224 0 12 chr13 6958387 6958472 -94914697 - L1ME2 LINE L1 -62 6102 6019 565 158 20 20 chr13 6958580 6958732 -94914437 - L1M4 LINE L1 -3183 2963 2812 309 275 180 35 chr13 6958836 6959203 -94913966 - L1M4 LINE L1 -2002 4144 3725 1764 131 6 70 chr13 6959354 6959667 -94913502 - AluJb SINE Alu -18 294 2 6929 65 33 0 chr13 6959711 6960579 -94912590 + MER11D LTR ERVK 1 897 0 509 309 16 3 chr13 6961154 6961346 -94911823 - L1MC4a LINE L1 -332 5910 5713 243 0 0 0 chr13 6961892 6961919 -94911250 + (ATG)n Simple_repeat Simple_repeat 1 27 0 2119 98 16 10 chr13 6962148 6962453 -94910716 + AluSx SINE Alu 1 307 -5 234 210 12 25 chr13 6963263 6963344 -94909825 + CT-rich Low_complexity Low_complexity 1 80 0 294 208 73 10 chr13 6963609 6963705 -94909464 - L1ME4a LINE L1 0 6121 6020 524 265 57 29 chr13 6963778 6964023 -94909146 + MLT1J1 LTR MaLR 45 296 -150 2070 124 3 13 chr13 6964097 6964411 -94908758 + AluSx SINE Alu 1 311 -1 800 163 0 0 chr13 6966649 6966772 -94906397 - FLAM_C SINE Alu -8 125 3 1324 168 71 4 chr13 6967484 6967752 -94905417 + AluJo SINE Alu 19 304 -8 625 281 46 12 chr13 6967775 6968103 -94905066 + L1M4 LINE L1 2211 2549 -3597 2495 203 22 42 chr13 6968191 6968782 -94904387 + MER119 DNA MER1_type 5 583 0 641 119 8 42 chr13 6968831 6968949 -94904220 + FLAM_C SINE Alu 30 143 0 1045 139 11 37 chr13 6968963 6969150 -94904019 + AluJb SINE Alu 127 308 -4 400 243 64 125 chr13 6969155 6969207 -94903962 + L1M4 LINE L1 2678 2732 -3414 2320 63 37 0 chr13 6969207 6969507 -94903662 + AluY SINE Alu 1 311 0 400 243 64 125 chr13 6969507 6969750 -94903419 + L1M4 LINE L1 2732 2955 -3191 2217 141 60 0 chr13 6969752 6970134 -94903035 - L1PA16 LINE L1 0 6166 5762 314 109 0 0 chr13 6970144 6970190 -94902979 + L1P4 LINE L1 5755 5800 -366 423 245 78 91 chr13 6970201 6970470 -94902699 + L1M4 LINE L1 2945 3205 -2941 1890 155 0 0 chr13 6970470 6970780 -94902389 + AluSx SINE Alu 1 310 -2 423 245 78 91 chr13 6970780 6971024 -94902145 + L1M4 LINE L1 3205 3451 -2695 3508 179 42 23 chr13 6971074 6971810 -94901359 + L1MC3 LINE L1 7015 7764 -21 23 54 0 0 chr13 6971917 6971954 -94901215 + AT_rich Low_complexity Low_complexity 1 37 0 1833 152 0 3 chr13 6971964 6972261 -94900908 + AluJb SINE Alu 1 296 -16 2178 78 0 3 chr13 6972263 6972611 -94900558 + AluY SINE Alu 1 347 0 724 285 81 4 chr13 6972611 6972871 -94900298 + L1M4 LINE L1 3950 4229 -1917 22 35 0 0 chr13 6973745 6973774 -94899395 + AT_rich Low_complexity Low_complexity 1 29 0 2862 152 30 4 chr13 6974090 6974591 -94898578 - L1MA4 LINE L1 -11 6289 5776 308 234 16 0 chr13 6974622 6974686 -94898483 - L1MC4 LINE L1 -1339 6703 6639 2517 30 0 7 chr13 6974689 6974991 -94898178 - AluY SINE Alu -11 300 1 3270 125 29 5 chr13 6974991 6975629 -94897540 - L1M2 LINE L1 -514 5786 5127 342 297 25 34 chr13 6976254 6976372 -94896797 + MIR SINE MIR 24 140 -68 1061 257 86 24 chr13 6976387 6976761 -94896408 - MLT2C1 LTR ERVL 0 397 1 401 327 47 45 chr13 6976911 6977336 -94895833 - L1ME4a LINE L1 -173 5948 5523 875 172 105 62 chr13 6977467 6977594 -94895575 + Tigger3(Golem) DNA MER2_type 1 142 -2887 2424 54 3 0 chr13 6977594 6977890 -94895279 + AluY SINE Alu 2 298 -13 875 172 105 62 chr13 6977890 6977971 -94895198 + Tigger3(Golem) DNA MER2_type 142 218 -2811 * 3747 135 66 2 chr13 6977946 6978086 -94895083 + Tigger3(Golem) DNA MER2_type 2354 2484 -545 575 242 0 8 chr13 6978086 6978210 -94894959 + FLAM_A SINE Alu 1 123 -10 3747 135 66 2 chr13 6978210 6978704 -94894465 + Tigger3(Golem) DNA MER2_type 2484 3029 0 1685 127 4 12 chr13 6978886 6979145 -94894024 - Tigger2 DNA MER2_type 0 2718 2462 4131 142 53 30 chr13 6979182 6979485 -94893684 - Tigger2 DNA MER2_type -1946 772 477 2373 51 3 0 chr13 6979485 6979777 -94893392 - AluY SINE Alu -18 293 1 4131 142 53 30 chr13 6979777 6980228 -94892941 - Tigger2 DNA MER2_type -2241 477 1 1651 180 81 33 chr13 6981423 6981818 -94891351 - MLT2D LTR ERVL 0 414 1 2325 107 0 0 chr13 6983019 6983317 -94889852 + AluSg SINE Alu 1 298 -12 286 324 142 7 chr13 6983898 6984046 -94889123 - MER5A DNA MER1_type -4 185 18 231 304 26 61 chr13 6984287 6984402 -94888767 + L3b LINE CR1 1327 1437 -146 252 228 0 0 chr13 6985359 6985416 -94887753 + MER53 DNA DNA 1 57 -132 662 141 141 0 chr13 6985416 6985537 -94887632 + FRAM SINE Alu 23 160 -16 294 206 0 14 chr13 6985538 6985611 -94887558 - MER53 DNA DNA -37 152 81 2301 94 3 16 chr13 6986966 6987274 -94885895 + AluSq SINE Alu 2 305 -8 2404 78 0 0 chr13 6988498 6988791 -94884378 - AluSc SINE Alu -14 295 3 866 238 17 74 chr13 6988960 6989259 -94883910 + L1MA9 LINE L1 5987 6268 -44 1604 148 72 14 chr13 6990955 6991232 -94881937 + AluJb SINE Alu 5 297 -15 200 193 70 35 chr13 6991642 6991699 -94881470 + L3 LINE CR1 1519 1577 0 2550 54 0 19 chr13 6992174 6992491 -94880678 - AluY SINE Alu 0 311 1 513 188 10 0 chr13 6993110 6993211 -94879958 - MLT1G LTR MaLR 0 590 489 873 57 63 10 chr13 6995296 6995634 -94877535 + (TG)n Simple_repeat Simple_repeat 1 537 0 702 58 64 23 chr13 6995661 6995833 -94877336 + (TG)n Simple_repeat Simple_repeat 2 180 0 183 263 153 58 chr13 6996136 6996273 -94876896 + MIR3 SINE MIR 24 173 -35 2430 81 0 3 chr13 6996376 6996674 -94876495 - AluSq SINE Alu -16 297 1 341 235 160 34 chr13 6996889 6997008 -94876161 - MER63 DNA MER1_type -302 760 1 208 273 64 27 chr13 6997098 6997208 -94875961 + MIR SINE MIR 120 233 -29 288 165 29 5 chr13 6998018 6998127 -94875042 + MER20 DNA MER1_type 55 219 0 2386 96 0 3 chr13 6999573 6999874 -94873295 + AluSp SINE Alu 1 300 -13 2518 65 3 0 chr13 6999875 7000210 -94872959 + AluY SINE Alu 1 336 0 2193 102 3 14 chr13 7000595 7000890 -94872279 + AluSx SINE Alu 1 292 -20 565 262 83 35 chr13 7001324 7001553 -94871616 + MIR SINE MIR 7 246 -16 634 314 31 14 chr13 7002270 7002563 -94870606 + L1MB7 LINE L1 5863 6160 -24 218 103 0 26 chr13 7006732 7006771 -94866398 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 233 373 105 19 chr13 7006936 7007250 -94865919 + L2 LINE L2 2222 2562 -752 246 32 0 0 chr13 7008267 7008298 -94864871 + (CA)n Simple_repeat Simple_repeat 1 31 0 2282 110 3 7 chr13 7009005 7009313 -94863856 - AluSq SINE Alu -6 307 1 189 279 49 0 chr13 7009545 7009606 -94863563 - MIR SINE MIR -43 219 156 2966 3 0 19 chr13 7009829 7010151 -94863018 + AluYb8 SINE Alu 1 316 -2 926 213 30 53 chr13 7010461 7010724 -94862445 + MIR SINE MIR 5 261 -1 2117 137 0 19 chr13 7010756 7011063 -94862106 + AluJo SINE Alu 1 301 -11 180 254 0 34 chr13 7011372 7011431 -94861738 + MIR SINE MIR 206 262 0 246 160 40 0 chr13 7011446 7011496 -94861673 - L1ME LINE L1 -452 5669 5618 280 279 27 82 chr13 7013657 7013804 -94859365 + L2 LINE L2 2925 3063 -209 2449 95 0 9 chr13 7014620 7014936 -94858233 + AluSq SINE Alu 1 313 0 199 208 19 19 chr13 7015615 7015668 -94857501 - L2 LINE L2 0 3313 3261 349 282 70 14 chr13 7016062 7016204 -94856965 - L2 LINE L2 0 3313 3164 2090 112 7 0 chr13 7016639 7016943 -94856226 - AluSx SINE Alu 0 308 3 706 65 56 28 chr13 7016961 7017069 -94856100 - HY1 scRNA scRNA -1 111 1 1088 156 13 69 chr13 7017069 7017292 -94855877 - AluJo SINE Alu -16 296 85 519 126 58 0 chr13 7017296 7017383 -94855786 - FRAM SINE Alu -59 117 26 1922 135 20 24 chr13 7017404 7017700 -94855469 - AluSx SINE Alu -17 295 1 219 36 0 0 chr13 7018397 7018425 -94854744 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 211 318 15 0 chr13 7018782 7018848 -94854321 - L2 LINE L2 -527 2787 2721 2117 134 3 13 chr13 7019068 7019375 -94853794 - AluJb SINE Alu -8 304 1 295 313 0 0 chr13 7020949 7021029 -94852140 - MER5A DNA MER1_type -100 89 10 1716 141 111 4 chr13 7021088 7021350 -94851819 - AluSx SINE Alu -19 293 4 227 35 0 0 chr13 7021968 7021997 -94851172 + MER5A DNA MER1_type 41 69 -120 614 200 21 14 chr13 7022001 7022141 -94851028 + FLAM_A SINE Alu 2 142 0 1057 118 11 6 chr13 7022206 7022384 -94850785 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 409 218 11 0 chr13 7022386 7022473 -94850696 + MER5A DNA MER1_type 64 151 -38 451 269 69 40 chr13 7022494 7022669 -94850500 - MER97b DNA MER1_type? -859 194 15 856 158 0 0 chr13 7023525 7023652 -94849517 + FLAM_C SINE Alu 1 127 -16 309 282 77 46 chr13 7027157 7027352 -94845817 - L1ME4a LINE L1 -2 6119 5919 333 254 91 27 chr13 7027540 7027650 -94845519 - L1ME4a LINE L1 -474 5647 5531 2245 120 0 0 chr13 7027928 7028227 -94844942 - AluSx SINE Alu -13 299 1 918 129 0 0 chr13 7028451 7028575 -94844594 + FLAM_C SINE Alu 1 124 -19 227 337 36 0 chr13 7028584 7028667 -94844502 - L2 LINE L2 -561 2753 2668 2357 89 7 0 chr13 7029038 7029341 -94843828 + AluY SINE Alu 1 305 -6 181 353 173 0 chr13 7029350 7029489 -94843680 - MIR SINE MIR -3 259 97 861 232 150 15 chr13 7029550 7029890 -94843279 + LTR37A LTR ERV1 3 388 -38 180 125 0 0 chr13 7030324 7030356 -94842813 + (T)n Simple_repeat Simple_repeat 1 32 0 1869 136 48 42 chr13 7030429 7030739 -94842430 - AluJb SINE Alu 0 312 1 1518 187 63 20 chr13 7031312 7031659 -94841510 + L1PA16 LINE L1 5803 6164 -2 223 191 152 38 chr13 7032554 7032659 -94840510 + L2 LINE L2 3150 3266 -6 1738 174 3 3 chr13 7032755 7033059 -94840110 + AluJo SINE Alu 3 306 -6 201 74 0 0 chr13 7033061 7033088 -94840081 + (GGA)n Simple_repeat Simple_repeat 3 29 0 583 48 24 0 chr13 7033088 7033171 -94839998 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 216 297 0 0 chr13 7033504 7033568 -94839601 + L2 LINE L2 1912 1975 -1339 181 191 149 0 chr13 7033640 7033687 -94839482 - L3 LINE CR1 -931 646 593 644 250 48 18 chr13 7033735 7033963 -94839206 - MER90 LTR ERV1 0 575 341 1132 153 222 106 chr13 7034350 7034514 -94838655 - LTR52 LTR ERVL -5 416 273 2219 76 0 10 chr13 7034514 7034804 -94838365 + AluY SINE Alu 1 287 -24 1132 153 222 106 chr13 7034804 7034999 -94838170 - LTR52 LTR ERVL -148 273 15 1861 155 0 7 chr13 7034999 7035302 -94837867 + AluSx SINE Alu 1 301 -11 467 211 0 11 chr13 7035451 7035541 -94837628 - MIR SINE MIR -22 240 152 1841 129 31 28 chr13 7035552 7035610 -94837559 - MER2 DNA MER2_type -25 320 264 1964 123 10 0 chr13 7035610 7035903 -94837266 + AluSx SINE Alu 1 296 -16 1841 129 31 28 chr13 7035903 7036162 -94837007 - MER2 DNA MER2_type -81 264 2 550 303 26 33 chr13 7036163 7036315 -94836854 - MIR SINE MIR -111 151 1 261 278 157 28 chr13 7036986 7037094 -94836075 - MIR3 SINE MIR -36 172 66 528 151 21 11 chr13 7037288 7037381 -94835788 - MIR SINE MIR -98 164 71 1260 150 58 23 chr13 7037516 7037776 -94835393 - LTR54 LTR ERV1 0 510 242 1778 144 7 3 chr13 7037792 7038091 -94835078 - AluSq SINE Alu -13 300 1 204 318 64 18 chr13 7038949 7039059 -94834110 - MER5A DNA MER1_type -67 122 8 658 157 0 0 chr13 7039363 7039478 -94833691 - FLAM_A SINE Alu 0 142 28 1718 113 16 12 chr13 7040012 7040269 -94832900 + AluSc SINE Alu 51 308 -1 251 276 61 31 chr13 7040686 7040784 -94832385 + MLT1G1 LTR MaLR 1 101 -494 2308 149 66 76 chr13 7041007 7041247 -94831922 + LTR54 LTR ERV1 1 242 -268 2215 93 3 3 chr13 7041247 7041548 -94831621 + AluSx SINE Alu 1 301 -11 2308 149 66 76 chr13 7041548 7041822 -94831347 + LTR54 LTR ERV1 242 510 0 528 151 21 11 chr13 7041957 7042050 -94831119 + MIR SINE MIR 71 164 -98 40 0 0 0 chr13 7042392 7042432 -94830737 + AT_rich Low_complexity Low_complexity 1 40 0 409 131 48 7 chr13 7042446 7042591 -94830578 + (TA)n Simple_repeat Simple_repeat 1 151 0 2431 51 0 0 chr13 7043339 7043633 -94829536 + AluY SINE Alu 1 294 -17 198 233 0 0 chr13 7043633 7043676 -94829493 - MIR SINE MIR -151 111 69 196 130 43 0 chr13 7049625 7049671 -94823498 + CT-rich Low_complexity Low_complexity 2 49 0 1873 110 3 28 chr13 7052064 7052378 -94820791 - AluSq SINE Alu 0 309 3 2428 62 0 3 chr13 7052515 7052821 -94820348 + AluY SINE Alu 1 305 -6 314 190 36 51 chr13 7053297 7053490 -94819679 + L1ME2 LINE L1 5312 5495 -685 865 240 61 51 chr13 7053557 7053869 -94819300 + L1MEd LINE L1 401 715 -5404 * 891 247 29 14 chr13 7053862 7054137 -94819032 + L1MEd LINE L1 979 1257 -4862 271 294 56 53 chr13 7054182 7054502 -94818667 + L1MEd LINE L1 1336 1656 -4473 264 344 176 0 chr13 7054644 7054769 -94818400 - L2 LINE L2 -299 2973 2827 1548 117 46 4 chr13 7054769 7055008 -94818161 + L1PA13 LINE L1 5321 5569 -596 4969 56 13 20 chr13 7055008 7056040 -94817129 - MER11A LTR ERVK 0 1266 6 3921 84 59 3 chr13 7056040 7056612 -94816557 + L1PA13 LINE L1 5560 6163 0 950 241 87 78 chr13 7056612 7056901 -94816268 + L1ME2 LINE L1 5737 6022 -142 2251 79 0 0 chr13 7056901 7057192 -94815977 - AluY SINE Alu -20 291 1 950 241 87 78 chr13 7057192 7057209 -94815960 + L1ME2 LINE L1 6022 6037 -127 1709 144 0 0 chr13 7057209 7057459 -94815710 - AluSq SINE Alu -63 250 1 950 241 87 78 chr13 7057459 7057575 -94815594 + L1ME2 LINE L1 6037 6164 0 352 181 150 8 chr13 7057588 7057721 -94815448 + L1MC5 LINE L1 7773 7924 -37 347 248 0 29 chr13 7057833 7057938 -94815231 + L1ME3A LINE L1 6068 6169 -1 695 219 6 37 chr13 7058408 7058572 -94814597 - FRAM SINE Alu -3 163 5 695 191 28 14 chr13 7058580 7058721 -94814448 - MER5B DNA MER1_type -35 143 1 1835 115 0 0 chr13 7058986 7059239 -94813930 + AluSg SINE Alu 46 298 -12 2166 79 0 36 chr13 7059301 7059606 -94813563 + AluY SINE Alu 1 294 -17 215 303 9 46 chr13 7059878 7059987 -94813182 + MIR SINE MIR 7 111 -97 1878 242 120 2 chr13 7060029 7060513 -94812656 + MLT1H LTR MaLR 9 549 0 976 231 99 0 chr13 7061102 7061384 -94811785 + MER33 DNA MER1_type 1 310 -14 723 19 88 6 chr13 7061505 7061664 -94811505 + (TA)n Simple_repeat Simple_repeat 1 172 0 662 274 39 10 chr13 7061769 7061977 -94811192 - L2 LINE L2 -1199 2115 1902 414 323 0 23 chr13 7061974 7062107 -94811062 + L2 LINE L2 2265 2394 -920 * 2155 266 110 41 chr13 7062107 7063438 -94809731 + L1MEc LINE L1 546 1968 -4428 1030 127 24 24 chr13 7063438 7063603 -94809566 + HUERS-P3 LTR ERV1 3120 3284 -5635 790 221 36 0 chr13 7063596 7063736 -94809433 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 4241 125 8 8 chr13 7063747 7064365 -94808804 + HUERS-P3 LTR ERV1 4960 5577 -3342 3774 188 51 77 chr13 7064350 7064387 -94808782 + HUERS-P3 LTR ERV1 6162 6198 -2721 * 2530 39 0 3 chr13 7064387 7064696 -94808473 + AluY SINE Alu 1 308 -3 3774 188 51 77 chr13 7064696 7065504 -94807665 + HUERS-P3 LTR ERV1 6198 6985 -1934 702 177 86 11 chr13 7065505 7065691 -94807478 + HUERS-P3 LTR ERV1 4144 4343 -537 1355 161 7 14 chr13 7065982 7066232 -94806937 + HUERS-P3 LTR ERV1 7168 8913 -6 3338 183 35 13 chr13 7066241 7066865 -94806304 + LTR9B LTR ERV1 7 644 0 953 273 117 23 chr13 7066881 7067309 -94805860 + MLT1L LTR MaLR 145 612 -3 251 340 141 19 chr13 7068272 7068478 -94804691 - L2 LINE L2 -957 2357 2127 1680 148 13 23 chr13 7068758 7069061 -94804108 - AluSx SINE Alu -12 300 1 225 310 28 0 chr13 7069187 7069258 -94803911 - L2 LINE L2 -12 3301 3229 2285 76 10 0 chr13 7069265 7069566 -94803603 + AluY SINE Alu 1 304 -7 466 203 32 57 chr13 7070182 7070305 -94802864 - FLAM_A SINE Alu -13 120 1 1950 118 31 3 chr13 7071078 7071365 -94801804 + AluSp SINE Alu 1 295 -18 4088 272 110 38 chr13 7071585 7072867 -94800302 - L1ME LINE L1 -482 5688 4499 1646 162 3 26 chr13 7072867 7073170 -94799999 - AluJb SINE Alu -16 296 1 4088 272 110 38 chr13 7073170 7073410 -94799759 - L1ME LINE L1 -1671 4499 4278 405 0 0 0 chr13 7073410 7073455 -94799714 + (TG)n Simple_repeat Simple_repeat 2 46 0 4088 272 110 38 chr13 7073455 7073488 -94799681 - L1ME LINE L1 -1892 4278 4249 1980 129 10 6 chr13 7073488 7073799 -94799370 + AluSx SINE Alu 1 312 0 4088 272 110 38 chr13 7073799 7075154 -94798015 - L1ME LINE L1 -1921 4249 2565 660 304 36 24 chr13 7075363 7075695 -94797474 - L1M4 LINE L1 -1995 4151 3816 1880 154 22 3 chr13 7075766 7076078 -94797091 - L1PA16 LINE L1 -21 6145 5828 2318 92 0 0 chr13 7076078 7076384 -94796785 - AluSq SINE Alu -7 306 1 2062 116 3 0 chr13 7076387 7076698 -94796471 - AluSx SINE Alu 0 312 1 1683 182 51 22 chr13 7076699 7077112 -94796057 - L1 LINE L1 -2139 4007 3583 728 109 0 36 chr13 7077251 7077361 -94795808 - AluSg SINE Alu -176 134 29 9949 142 23 42 chr13 7077361 7077835 -94795334 - L1PA15-16 LINE L1 -3489 3360 2878 351 0 0 0 chr13 7077835 7077874 -94795295 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1926 131 4 0 chr13 7077874 7078148 -94795021 - AluSc SINE Alu -34 275 1 9949 142 23 42 chr13 7078148 7078424 -94794745 - L1PA15-16 LINE L1 -3970 2879 2599 10169 25 19 118 chr13 7078424 7079961 -94793208 + SVA Other Other 3 1386 0 9949 142 23 42 chr13 7079961 7081289 -94791880 - L1PA15-16 LINE L1 -4250 2599 1305 2526 166 15 0 chr13 7081295 7081699 -94791470 - L1PA15-16 LINE L1 -6437 412 3 455 350 110 19 chr13 7081700 7082017 -94791152 - L1M4 LINE L1 -2322 3824 3479 576 144 33 0 chr13 7082028 7082118 -94791051 + AluSg/x SINE Alu 201 293 -16 671 176 119 6 chr13 7082462 7082621 -94790548 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 7083145 7083268 -94789901 - MER112 DNA MER1_type 0 260 139 432 0 0 0 chr13 7083286 7083334 -94789835 + (TG)n Simple_repeat Simple_repeat 2 49 0 593 257 15 49 chr13 7083384 7083597 -94789572 + MIR3 SINE MIR 13 208 0 1981 118 0 11 chr13 7083656 7083935 -94789234 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 7083942 7083965 -94789204 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 360 0 0 0 chr13 7084588 7084628 -94788541 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 269 115 13 chr13 7084703 7084781 -94788388 - MIR SINE MIR -29 233 148 755 204 62 138 chr13 7084813 7085362 -94787807 - L1MC5 LINE L1 -50 7911 7405 478 239 39 23 chr13 7085362 7085492 -94787677 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 7085770 7085794 -94787375 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 7086840 7086870 -94786299 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2013 126 0 0 chr13 7086873 7087150 -94786019 - AluSx SINE Alu -25 287 11 232 337 20 0 chr13 7088913 7089011 -94784158 + L3b LINE CR1 1125 1224 -359 2161 121 26 10 chr13 7089231 7089538 -94783631 - AluSx SINE Alu 0 312 1 587 316 16 5 chr13 7090283 7090470 -94782699 - MER5A DNA MER1_type 0 189 1 198 239 209 0 chr13 7090823 7090890 -94782279 - L2 LINE L2 -1 3312 3232 244 261 153 9 chr13 7091255 7091366 -94781803 + MIR SINE MIR 81 207 -55 759 187 0 0 chr13 7091662 7091785 -94781384 - AluJb SINE Alu 0 312 190 888 198 210 24 chr13 7091787 7091944 -94781225 - AluSp SINE Alu -4 299 173 1460 127 5 9 chr13 7091944 7092164 -94781005 - AluSc SINE Alu -4 305 87 5837 129 47 17 chr13 7092166 7093107 -94780062 + LTR5 LTR ERVK 1 969 0 888 198 210 24 chr13 7093107 7093198 -94779971 - AluSp SINE Alu -130 173 1 2449 92 0 0 chr13 7093938 7094241 -94778928 + AluSc SINE Alu 1 303 -6 2138 125 10 0 chr13 7094293 7094589 -94778580 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr13 7094594 7094617 -94778552 + (CA)n Simple_repeat Simple_repeat 2 24 0 922 116 0 0 chr13 7095239 7095360 -94777809 - FRAM SINE Alu -28 148 28 2943 183 42 34 chr13 7095360 7095973 -94777196 + MER54A LTR ERVL 284 901 0 891 67 117 0 chr13 7097695 7097815 -94775354 - MER85 DNA T2_type -2 137 4 1798 174 3 10 chr13 7099168 7099478 -94773691 - AluJb SINE Alu -4 308 1 12053 206 21 10 chr13 7100628 7104361 -94768808 - L1PA16 LINE L1 -9 6157 2348 2145 126 0 0 chr13 7104363 7104656 -94768513 + AluSg SINE Alu 1 293 -17 2220 130 0 0 chr13 7107516 7107823 -94765346 - AluSx SINE Alu -5 307 1 1691 210 36 0 chr13 7109264 7109593 -94763576 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 7110252 7110273 -94762896 + AT_rich Low_complexity Low_complexity 1 21 0 3333 125 32 51 chr13 7110290 7110880 -94762289 - LTR14B LTR ERVK -13 595 17 417 295 114 18 chr13 7110975 7111141 -94762028 - MER5A DNA MER1_type 0 189 8 239 368 0 11 chr13 7111176 7111263 -94761906 - MER5A DNA MER1_type -31 158 73 2471 176 55 16 chr13 7111401 7111891 -94761278 - LTR22 LTR ERVK 0 509 1 1744 170 0 14 chr13 7112024 7112313 -94760856 + AluJo SINE Alu 1 285 -27 2149 116 0 25 chr13 7112324 7112644 -94760525 + AluSq SINE Alu 1 312 -1 459 271 172 36 chr13 7113815 7114036 -94759133 + MIR SINE MIR 2 252 -10 243 225 231 31 chr13 7114202 7114362 -94758807 - Charlie7 DNA MER1_type 0 2612 2421 337 269 135 7 chr13 7114602 7114743 -94758426 - L1ME LINE L1 -379 5742 5584 789 169 8 0 chr13 7114762 7114886 -94758283 - FLAM_C SINE Alu -7 126 2 2168 123 0 3 chr13 7115626 7115927 -94757242 + AluSx SINE Alu 1 300 -12 1297 135 5 10 chr13 7117176 7117376 -94755793 - AluSg/x SINE Alu -30 282 84 185 352 77 40 chr13 7117852 7118099 -94755070 - L2 LINE L2 -912 2402 2147 843 215 15 80 chr13 7118224 7118549 -94754620 + L1M4 LINE L1 972 1275 -5267 5328 100 28 10 chr13 7118550 7119350 -94753819 + L1PA16 LINE L1 5351 6164 -2 2312 192 61 42 chr13 7119343 7119453 -94753716 + L1M4 LINE L1 1255 1361 -5285 * 1765 159 30 14 chr13 7119453 7119749 -94753420 + AluJo SINE Alu 7 307 -5 2312 192 61 42 chr13 7119749 7120289 -94752880 + L1M4 LINE L1 1361 1918 -4728 1738 177 14 0 chr13 7120292 7120574 -94752595 + AluJb SINE Alu 4 289 -23 2219 112 3 0 chr13 7120921 7121215 -94751954 + AluSp SINE Alu 1 295 -18 1834 137 3 27 chr13 7121394 7121686 -94751483 - LTR22A LTR ERVK 0 458 174 6746 103 9 3 chr13 7121686 7122615 -94750554 - HERVK22 LTR ERVK -3760 3077 2144 6071 132 20 2 chr13 7122615 7123532 -94749637 - HERVK22 LTR ERVK -5902 935 3 3105 121 4 11 chr13 7123534 7123989 -94749180 - LTR22A LTR ERVK 0 458 7 787 194 65 19 chr13 7124035 7124190 -94748979 - AluJo/FRAM SINE Alu -17 295 134 479 195 52 0 chr13 7124193 7124270 -94748899 - AluJ/FLAM SINE Alu -230 82 2 847 156 0 8 chr13 7124375 7124503 -94748666 + FLAM_C SINE Alu 2 128 -5 472 278 60 60 chr13 7124655 7124889 -94748280 - MIR SINE MIR -14 248 15 2532 53 0 22 chr13 7125519 7125837 -94747332 + AluY SINE Alu 1 311 0 223 218 23 35 chr13 7126334 7126421 -94746748 + A-rich Low_complexity Low_complexity 2 87 0 542 120 20 30 chr13 7127512 7127612 -94745557 - L1MA10 LINE L1 -1 6333 6235 252 208 0 0 chr13 7128089 7128142 -94745027 - L1ME3A LINE L1 -11 6159 6107 2129 209 43 9 chr13 7128178 7128624 -94744545 - MER65C LTR ERV1 0 461 1 307 255 0 0 chr13 7128638 7128724 -94744445 - L1ME3 LINE L1 -174 5996 5911 2167 124 0 19 chr13 7128725 7129032 -94744137 + AluSx SINE Alu 1 301 -11 3776 185 54 68 chr13 7129135 7129580 -94743589 - Charlie5 DNA MER1_type -846 1778 1328 1829 156 3 29 chr13 7129580 7129887 -94743282 + AluJb SINE Alu 1 299 -13 3776 185 54 68 chr13 7129887 7129934 -94743235 - Charlie5 DNA MER1_type -1296 1328 1282 1666 172 10 10 chr13 7129934 7130237 -94742932 + AluJb SINE Alu 3 305 -7 3776 185 54 68 chr13 7130237 7130738 -94742431 - Charlie5 DNA MER1_type -1342 1282 798 800 205 0 13 chr13 7130738 7130889 -94742280 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 7130885 7130928 -94742241 - Tigger2 DNA MER2_type -253 2465 2423 * 1575 150 71 11 chr13 7130981 7131261 -94741908 + Tigger2 DNA MER2_type 2422 2718 0 3110 201 84 10 chr13 7131270 7131598 -94741571 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 7131598 7131961 -94741208 + MSTD LTR MaLR 1 396 0 3110 201 84 10 chr13 7131961 7132360 -94740809 - Charlie5 DNA MER1_type -2136 488 9 2237 77 7 13 chr13 7132383 7132683 -94740486 - AluY SINE Alu -13 298 1 481 248 121 27 chr13 7132715 7133010 -94740159 - L1MC4a LINE L1 -1903 5905 5548 248 244 81 24 chr13 7133113 7133236 -94739933 - L1MC4a LINE L1 -2331 5477 5348 1518 240 271 25 chr13 7133401 7133821 -94739348 + L2 LINE L2 1548 1863 -1451 220 36 0 0 chr13 7133821 7133849 -94739320 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2185 85 21 4 chr13 7133849 7134130 -94739039 - AluSq SINE Alu -1 313 1 1518 240 271 25 chr13 7134130 7134438 -94738731 + L2 LINE L2 1862 2457 -857 257 212 106 97 chr13 7134421 7134534 -94738635 - L2 LINE L2 -2674 640 527 * 206 32 32 0 chr13 7134540 7134571 -94738598 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1984 139 3 7 chr13 7134571 7134860 -94738309 - AluSx SINE Alu -18 289 1 813 150 0 8 chr13 7134862 7134989 -94738180 - AluJb SINE Alu -16 296 171 380 261 369 11 chr13 7134997 7135357 -94737812 - L2 LINE L2 -2793 521 33 403 319 292 0 chr13 7135424 7135585 -94737584 + L2 LINE L2 2973 3086 -227 204 40 0 0 chr13 7135585 7135610 -94737559 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 319 292 0 chr13 7135610 7135708 -94737461 + L2 LINE L2 3086 3308 -5 1015 144 6 35 chr13 7137934 7138108 -94735061 + AluJo SINE Alu 120 288 -24 204 242 22 132 chr13 7138598 7138689 -94734480 - L2 LINE L2 -5 3267 3187 193 303 110 19 chr13 7138680 7138835 -94734334 + L3 LINE CR1 1101 1269 -308 * 604 197 25 8 chr13 7139004 7139126 -94734043 - Charlie1 DNA MER1_type 0 2761 2638 2119 109 7 3 chr13 7139127 7139411 -94733758 + AluSx SINE Alu 1 285 -27 683 219 0 0 chr13 7139952 7140071 -94733098 - FLAM_A SINE Alu -10 123 5 2105 130 7 3 chr13 7140114 7140407 -94732762 - AluSx SINE Alu -18 294 1 706 251 51 122 chr13 7140499 7141025 -94732144 - L1MC4 LINE L1 -1 8041 7553 1523 137 76 54 chr13 7141035 7141335 -94731834 - AluSx SINE Alu 0 306 1 35 63 0 0 chr13 7142017 7142080 -94731089 + AT_rich Low_complexity Low_complexity 1 63 0 233 296 157 0 chr13 7144678 7144786 -94728383 - L1MC/D LINE L1 -1904 5904 5780 389 221 136 14 chr13 7144906 7145046 -94728123 - L1ME4a LINE L1 -6 6115 5959 1405 189 148 84 chr13 7146005 7146444 -94726725 - MLT1C LTR MaLR 0 467 1 251 180 0 33 chr13 7146496 7146557 -94726612 + MER46C DNA MER2_type 83 141 -197 692 254 35 22 chr13 7146772 7147000 -94726169 - L1M4c LINE L1 -6124 260 30 392 192 26 0 chr13 7147015 7147093 -94726076 + MER46C DNA MER2_type 256 335 -3 382 269 37 37 chr13 7147479 7147613 -94725556 - MIR SINE MIR -108 154 21 1987 151 3 0 chr13 7147636 7147941 -94725228 - AluJb SINE Alu -6 306 1 364 281 97 42 chr13 7148173 7148411 -94724758 - L1ME4a LINE L1 -2262 5546 5296 931 268 236 20 chr13 7148503 7148999 -94724170 + L2 LINE L2 2149 2536 -777 2130 80 23 47 chr13 7148999 7149298 -94723871 - AluSp SINE Alu -21 292 1 931 268 236 20 chr13 7149298 7149674 -94723495 + L2 LINE L2 2536 3215 -98 887 167 54 12 chr13 7149676 7149844 -94723325 - AluJo SINE Alu -17 295 121 291 307 0 0 chr13 7149844 7149919 -94723250 + L2 LINE L2 3236 3310 -3 409 234 103 0 chr13 7150680 7150825 -94722344 + L1M4 LINE L1 5021 5180 -966 517 218 84 101 chr13 7151226 7151455 -94721714 - L1MC5 LINE L1 -35 7926 7704 1875 132 7 7 chr13 7151455 7151735 -94721434 + AluSx SINE Alu 1 280 -32 517 218 84 101 chr13 7151735 7151872 -94721297 - L1MC5 LINE L1 -257 7704 7566 243 281 18 0 chr13 7152172 7152229 -94720940 - L2 LINE L2 0 3272 3215 359 224 109 90 chr13 7152229 7152385 -94720784 - L1MC/D LINE L1 -2098 5710 5552 1032 145 70 0 chr13 7152398 7152570 -94720599 - AluSg/x SINE Alu -11 299 116 529 250 30 43 chr13 7153103 7153267 -94719902 - MER3 DNA MER1_type 0 209 48 280 272 152 0 chr13 7153726 7153818 -94719351 - L2 LINE L2 -4 3268 3163 365 267 64 45 chr13 7153818 7154020 -94719149 - L1MC4 LINE L1 -965 7077 6872 2102 72 72 10 chr13 7154032 7154357 -94718812 - AluY SINE Alu 0 343 1 1136 185 37 8 chr13 7157055 7157298 -94715871 + L1MB3 LINE L1 5931 6180 -3 589 231 32 32 chr13 7157490 7157646 -94715523 - L2 LINE L2 -38 3275 3120 604 267 287 22 chr13 7157879 7158929 -94714240 - L2 LINE L2 -537 2777 1450 304 275 180 5 chr13 7159332 7159521 -94713648 - L1MC4 LINE L1 0 8042 7821 284 167 39 13 chr13 7159622 7159700 -94713469 - L2 LINE L2 -2464 850 771 946 170 71 11 chr13 7160585 7160767 -94712402 + MER46A DNA MER2_type 44 236 0 325 304 121 4 chr13 7161040 7161432 -94711737 - L1MC/D LINE L1 -592 5570 5127 698 225 0 0 chr13 7161702 7161831 -94711338 + Tigger1 DNA MER2_type 10 138 -2280 3917 96 19 13 chr13 7161843 7162366 -94710803 - MER1A DNA MER1_type -1 526 1 352 198 86 35 chr13 7162389 7162505 -94710664 - L1M4 LINE L1 -905 5241 5120 444 244 74 15 chr13 7162795 7162930 -94710239 + MIR SINE MIR 49 191 -71 241 229 43 29 chr13 7163169 7163239 -94709930 + MER116 DNA Mariner 1 71 -9 219 301 73 32 chr13 7163290 7163413 -94709756 + L2 LINE L2 2618 2745 -569 227 267 0 0 chr13 7163423 7163483 -94709686 + Charlie7 DNA MER1_type 38 97 -2515 21 36 0 0 chr13 7163924 7163952 -94709217 + AT_rich Low_complexity Low_complexity 1 28 0 562 203 13 51 chr13 7164923 7165081 -94708088 + L1MC5 LINE L1 7059 7210 -751 30 59 0 0 chr13 7166228 7166279 -94706890 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 7167234 7167257 -94705912 + AT_rich Low_complexity Low_complexity 1 23 0 642 187 0 0 chr13 7167384 7167839 -94705330 + (TA)n Simple_repeat Simple_repeat 1 455 0 22 35 0 0 chr13 7168791 7168820 -94704349 + GC_rich Low_complexity Low_complexity 1 29 0 2293 95 0 25 chr13 7170475 7170791 -94702378 - AluSx SINE Alu -4 308 1 1136 142 6 0 chr13 7171030 7171206 -94701963 - AluSg/x SINE Alu 0 310 134 195 42 0 0 chr13 7171476 7171500 -94701669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1900 150 0 7 chr13 7171503 7171789 -94701380 - AluSx SINE Alu -28 284 1 1308 214 23 8 chr13 7172037 7172303 -94700866 - L1MB8 LINE L1 -6 6172 5903 26 0 0 0 chr13 7173036 7173062 -94700107 + AT_rich Low_complexity Low_complexity 1 26 0 642 257 30 15 chr13 7174069 7174271 -94698898 + L1MA6 LINE L1 5746 5950 -350 490 213 9 0 chr13 7174272 7174380 -94698789 + L1MA4A LINE L1 5746 5854 -449 538 127 218 0 chr13 7174423 7174533 -94698636 - MER1B DNA MER1_type -163 134 1 364 282 117 70 chr13 7174533 7174746 -94698423 + L2 LINE L2 2673 2895 -419 270 116 47 0 chr13 7175491 7175555 -94697614 - Alu SINE Alu 0 306 241 2210 92 7 10 chr13 7175611 7175949 -94697220 + AluSx SINE Alu 1 312 0 1700 162 7 23 chr13 7176345 7176647 -94696522 + AluJb SINE Alu 2 298 -14 384 335 60 38 chr13 7176657 7177105 -94696064 - L1ME4a LINE L1 -143 5978 5521 2257 121 0 0 chr13 7179054 7179359 -94693810 - AluSx SINE Alu -7 305 1 1221 120 54 7 chr13 7179575 7179939 -94693230 + MSTA LTR MaLR 3 426 -2 2216 97 3 19 chr13 7180529 7180838 -94692331 + AluSc SINE Alu 1 304 -5 203 189 0 57 chr13 7181433 7181486 -94691683 + GA-rich Low_complexity Low_complexity 2 51 0 2089 77 14 7 chr13 7181592 7181878 -94691291 + AluSx SINE Alu 1 288 -24 2702 133 29 16 chr13 7182132 7182795 -94690374 + L1M2 LINE L1 4915 5584 -728 272 310 106 9 chr13 7183372 7183485 -94689684 - L2 LINE L2 -518 2796 2673 2073 122 6 6 chr13 7183817 7184129 -94689040 + AluSx SINE Alu 1 312 0 2397 58 0 48 chr13 7184935 7185247 -94687922 - AluY SINE Alu -14 297 1 324 0 0 0 chr13 7186619 7186655 -94686514 + (TG)n Simple_repeat Simple_repeat 2 37 0 2522 41 0 0 chr13 7186753 7187045 -94686124 - AluY SINE Alu -19 292 1 201 275 0 0 chr13 7187241 7187281 -94685888 - L2 LINE L2 -2918 396 357 1659 128 0 8 chr13 7187676 7187918 -94685251 + AluSx SINE Alu 1 240 -72 225 154 0 0 chr13 7187928 7187967 -94685202 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1065 127 33 0 chr13 7188806 7188956 -94684213 + AluJb SINE Alu 130 284 -28 2246 105 0 0 chr13 7189198 7189493 -94683676 + AluSc SINE Alu 1 295 -14 2223 105 0 0 chr13 7190018 7190314 -94682855 - AluY SINE Alu -15 296 1 243 217 36 84 chr13 7190445 7190528 -94682641 + MIR SINE MIR 117 195 -67 22 0 0 0 chr13 7191855 7191877 -94681292 + AT_rich Low_complexity Low_complexity 1 22 0 316 219 45 69 chr13 7192689 7192875 -94680294 - L1MC/D LINE L1 -2339 5469 5289 1012 221 16 72 chr13 7192890 7193197 -94679972 - AluJo SINE Alu -12 290 1 321 313 136 43 chr13 7193197 7193467 -94679702 - L1MC/D LINE L1 -842 5304 5061 2166 83 7 0 chr13 7193467 7193745 -94679424 + AluSp SINE Alu 15 294 -19 321 313 136 43 chr13 7193745 7194097 -94679072 - L1MC/D LINE L1 -1085 5061 4624 201 94 0 0 chr13 7194156 7194188 -94678981 + (T)n Simple_repeat Simple_repeat 1 32 0 4962 129 38 21 chr13 7194274 7194336 -94678833 + L1PA16 LINE L1 5286 5345 -821 2389 73 0 7 chr13 7194336 7194638 -94678531 - AluY SINE Alu -9 302 3 4962 129 38 21 chr13 7194638 7195438 -94677731 + L1PA16 LINE L1 5345 6163 -3 23 33 0 0 chr13 7195877 7195907 -94677262 + AT_rich Low_complexity Low_complexity 1 30 0 2104 116 0 26 chr13 7195929 7196239 -94676930 - AluSx SINE Alu -10 302 1 21 0 0 0 chr13 7196962 7196983 -94676186 + AT_rich Low_complexity Low_complexity 1 21 0 1720 181 0 7 chr13 7196988 7197280 -94675889 - AluJo SINE Alu -22 290 1 261 348 31 10 chr13 7198161 7198261 -94674908 - MIR SINE MIR -99 109 7 590 280 21 74 chr13 7198367 7198610 -94674559 - MER102b DNA MER1_type -1 340 111 872 125 0 0 chr13 7199116 7199236 -94673933 + FLAM_C SINE Alu 2 121 -12 21 0 0 0 chr13 7199510 7199531 -94673638 + AT_rich Low_complexity Low_complexity 1 21 0 1899 163 0 3 chr13 7199709 7200003 -94673166 + AluJb SINE Alu 1 293 -19 236 289 126 50 chr13 7200241 7200400 -94672769 - L3 LINE CR1 -88 1489 1319 1944 150 6 25 chr13 7200637 7200951 -94672218 + AluSx SINE Alu 1 308 -4 300 143 0 79 chr13 7202144 7202207 -94670962 - MLT1C LTR MaLR -409 58 1 1213 169 22 142 chr13 7202211 7202346 -94670823 - MLT1C-int LTR MaLR -4 1367 1217 1935 148 0 0 chr13 7202346 7202624 -94670545 + AluSx SINE Alu 17 294 -18 1213 169 22 142 chr13 7202624 7202854 -94670315 - MLT1C-int LTR MaLR -154 1217 1046 1620 188 10 23 chr13 7203080 7203383 -94669786 + AluJo SINE Alu 1 299 -13 1525 177 0 71 chr13 7203917 7204228 -94668941 - AluJo SINE Alu -23 289 1 937 177 11 17 chr13 7204317 7204492 -94668677 + AluJo SINE Alu 35 208 -104 8660 218 119 29 chr13 7204493 7206439 -94666730 - L1M4 LINE L1 -846 5536 3767 2125 104 10 7 chr13 7206439 7206737 -94666432 - AluY SINE Alu -12 299 1 8660 218 119 29 chr13 7206737 7209386 -94663783 - L1M4 LINE L1 -2615 3767 526 289 200 0 0 chr13 7212135 7212180 -94660989 + MER3 DNA MER1_type 46 90 -119 * 866 115 7 47 chr13 7212141 7212289 -94660880 - MER3 DNA MER1_type -4 205 64 769 180 90 198 chr13 7212289 7212733 -94660436 - MSTD LTR MaLR 0 396 1 464 370 94 36 chr13 7212799 7213320 -94659849 - L2 LINE L2 -550 2764 2214 250 314 176 17 chr13 7214034 7214273 -94658896 - L2 LINE L2 -1093 2221 1945 253 286 101 25 chr13 7214590 7214709 -94658460 + L3 LINE CR1 476 603 -974 1698 181 7 3 chr13 7216123 7216411 -94656758 + AluJb SINE Alu 1 289 -23 1833 155 18 3 chr13 7216466 7216750 -94656419 - AluSx SINE Alu -24 288 1 26 0 0 0 chr13 7216981 7217007 -94656162 + AT_rich Low_complexity Low_complexity 1 26 0 285 266 75 0 chr13 7217156 7217250 -94655919 - L1MC4a LINE L1 -1869 5939 5839 27 29 0 0 chr13 7218048 7218082 -94655087 + AT_rich Low_complexity Low_complexity 1 34 0 4460 152 67 17 chr13 7219205 7219437 -94653732 + MER6 DNA MER2_type 1 220 -645 360 0 0 0 chr13 7219437 7219477 -94653692 + (TG)n Simple_repeat Simple_repeat 2 41 0 4460 152 67 17 chr13 7219477 7220067 -94653102 + MER6 DNA MER2_type 220 864 -1 500 262 166 0 chr13 7220292 7220479 -94652690 + MIR SINE MIR 26 243 -19 398 265 31 10 chr13 7222730 7222828 -94650341 + L2 LINE L2 3200 3299 -14 314 262 119 0 chr13 7222855 7222981 -94650188 + L1ME4a LINE L1 5978 6118 -3 1473 164 80 0 chr13 7223102 7223364 -94649805 + AluJb SINE Alu 11 293 -19 1870 108 4 4 chr13 7223706 7223975 -94649194 - AluSg1 SINE Alu 0 309 41 1472 161 37 37 chr13 7224500 7224798 -94648371 + AluJo SINE Alu 1 298 -14 1731 149 46 7 chr13 7225028 7225310 -94647859 - AluSg SINE Alu -12 298 6 1655 152 37 4 chr13 7225721 7225990 -94647179 + AluJo SINE Alu 1 278 -34 21 0 0 0 chr13 7226191 7226212 -94646957 + AT_rich Low_complexity Low_complexity 1 21 0 553 265 125 5 chr13 7226647 7226847 -94646322 - MIR SINE MIR -38 224 1 3283 147 46 18 chr13 7226932 7227611 -94645558 - L1MB4 LINE L1 -7 6671 5974 5579 50 81 1 chr13 7227623 7228367 -94644802 - L1PA7 LINE L1 -2 6152 5350 42764 33 23 1 chr13 7228379 7234402 -94638767 - L1PA3 LINE L1 0 6155 2 2349 77 0 3 chr13 7234418 7234715 -94638454 - AluY SINE Alu -15 296 1 778 133 36 182 chr13 7234716 7234886 -94638283 - L1MB4 LINE L1 -709 5969 5845 1638 194 13 3 chr13 7234886 7235185 -94637984 - AluJo SINE Alu -6 306 5 778 133 36 182 chr13 7235185 7235292 -94637877 - L1MB4 LINE L1 -833 5845 5724 1913 171 65 36 chr13 7235293 7235364 -94637805 - Tigger2a DNA MER2_type -2274 434 367 1434 172 12 106 chr13 7235364 7235695 -94637474 - AluJo SINE Alu -2 300 1 1913 171 65 36 chr13 7235695 7236037 -94637132 - Tigger2a DNA MER2_type -2341 367 9 4063 185 43 138 chr13 7236044 7237162 -94636007 - L1MB4 LINE L1 -920 5724 4501 414 0 0 0 chr13 7237162 7237208 -94635961 + (TG)n Simple_repeat Simple_repeat 2 47 0 4063 185 43 138 chr13 7237208 7237616 -94635553 - L1MB4 LINE L1 -2143 4501 4355 1609 201 0 16 chr13 7237616 7237930 -94635239 - AluJb SINE Alu 0 312 4 4063 185 43 138 chr13 7237930 7238005 -94635164 - L1MB4 LINE L1 -2289 4355 4274 2096 169 26 3 chr13 7238005 7238354 -94634815 - MER73 LTR ERVL 0 644 288 * 2195 174 23 8 chr13 7238350 7238734 -94634435 - MER54A LTR ERVL -509 392 3 4758 218 51 21 chr13 7238735 7239170 -94633999 - L1MB4 LINE L1 -2367 4277 3856 2127 126 7 0 chr13 7239170 7239464 -94633705 + AluSx SINE Alu 1 296 -16 4758 218 51 21 chr13 7239464 7240731 -94632438 - L1MB4 LINE L1 -2788 3856 2521 2008 177 93 7 chr13 7240762 7241213 -94631956 - L1MB2 LINE L1 -1 6170 5681 * 3901 189 123 55 chr13 7241212 7241843 -94631326 - L1MB4 LINE L1 -4125 2521 1934 2280 103 3 3 chr13 7241843 7242155 -94631014 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 7242156 7242180 -94630989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1974 132 3 3 chr13 7242182 7242469 -94630700 - AluSx SINE Alu -25 287 1 3901 189 123 55 chr13 7242469 7242649 -94630520 - L1MB4 LINE L1 -4712 1934 1768 1920 208 47 13 chr13 7242649 7243101 -94630068 - MLT1C LTR MaLR 0 467 1 3901 189 123 55 chr13 7243101 7243531 -94629638 - L1MB4 LINE L1 -4878 1768 1189 3040 146 64 39 chr13 7243615 7244144 -94629025 - LTR9 LTR ERV1 -37 575 30 1973 143 7 0 chr13 7244144 7244451 -94628718 - AluSx SINE Alu -1 311 3 3040 146 64 39 chr13 7244451 7244482 -94628687 - LTR9 LTR ERV1 -582 30 1 508 207 107 0 chr13 7244651 7244791 -94628378 - L1M2 LINE L1 -4159 2690 2536 2094 118 0 0 chr13 7244826 7245105 -94628064 - AluSg SINE Alu -31 279 1 445 211 68 23 chr13 7245137 7245270 -94627899 - L1MB4 LINE L1 -5587 955 817 405 278 23 8 chr13 7245358 7245491 -94627678 - L1MB4 LINE L1 -5710 936 802 309 249 93 63 chr13 7245796 7246001 -94627168 - L1MB4 LINE L1 -6293 249 39 276 264 64 43 chr13 7246402 7246542 -94626627 + L1MC4 LINE L1 7190 7332 -710 255 256 65 87 chr13 7246648 7246952 -94626217 + L1MC4 LINE L1 7274 7677 -365 1945 128 11 3 chr13 7248230 7248512 -94624657 + AluSx SINE Alu 7 290 -22 2387 90 3 0 chr13 7248512 7248812 -94624357 + AluSp SINE Alu 1 301 -12 1062 118 0 20 chr13 7248812 7248965 -94624204 - AluSq/x SINE Alu -162 151 2 1100 155 98 136 chr13 7249188 7249253 -94623916 - MLT1A1 LTR MaLR 0 365 299 1955 5 0 0 chr13 7249253 7249465 -94623704 + AluYa5 SINE Alu 100 311 0 1100 155 98 136 chr13 7249465 7249767 -94623402 - MLT1A1 LTR MaLR -66 299 12 349 254 98 33 chr13 7250163 7250285 -94622884 - HAL1 LINE L1 -100 2407 2278 1360 182 102 15 chr13 7250555 7250819 -94622350 - AluJb SINE Alu -25 287 1 600 277 80 9 chr13 7250834 7251058 -94622111 - HAL1 LINE L1 -628 1879 1640 454 220 87 144 chr13 7251694 7251958 -94621211 - MIR SINE MIR -10 252 4 2189 107 0 10 chr13 7252891 7253190 -94619979 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr13 7253743 7253765 -94619404 + AT_rich Low_complexity Low_complexity 1 22 0 808 245 76 8 chr13 7254236 7254473 -94618696 + MER46C DNA MER2_type 86 338 0 1849 164 0 10 chr13 7254479 7254778 -94618391 - AluJo SINE Alu -16 296 1 208 198 169 0 chr13 7254972 7255028 -94618141 - MIR SINE MIR -76 132 67 2025 118 3 37 chr13 7255856 7256179 -94616990 + AluSx SINE Alu 1 312 0 13885 190 32 29 chr13 7256182 7262577 -94610592 + L1PB1 LINE L1 136 6864 -3 2337 73 0 23 chr13 7263361 7263662 -94609507 + AluSx SINE Alu 1 294 -18 1805 122 11 8 chr13 7264431 7264694 -94608475 + AluSx SINE Alu 42 305 -7 2179 110 0 3 chr13 7264921 7265213 -94607956 + AluSg SINE Alu 1 291 -19 464 213 46 9 chr13 7265256 7265364 -94607805 - L1ME1 LINE L1 -6 6160 6049 25 0 0 0 chr13 7265657 7265682 -94607487 + AT_rich Low_complexity Low_complexity 1 25 0 1247 294 88 13 chr13 7265837 7266292 -94606877 - L2 LINE L2 0 3313 2825 22 0 0 0 chr13 7266790 7266812 -94606357 + AT_rich Low_complexity Low_complexity 1 22 0 717 191 30 0 chr13 7267631 7267762 -94605407 + FRAM SINE Alu 1 135 -41 364 283 172 0 chr13 7267762 7267907 -94605262 - L3 LINE CR1 -731 846 677 1335 98 113 0 chr13 7268285 7268489 -94604680 + MER30 DNA MER1_type 4 230 0 496 224 97 30 chr13 7268801 7268966 -94604203 - MIR SINE MIR -1 261 86 2249 119 3 0 chr13 7269018 7269329 -94603840 - AluSx SINE Alu 0 312 1 409 329 127 21 chr13 7269711 7269948 -94603221 - MIR SINE MIR 0 262 1 653 172 6 38 chr13 7269986 7270064 -94603105 - L1MB3 LINE L1 -12 6171 6099 2283 106 0 3 chr13 7270064 7270366 -94602803 + AluSx SINE Alu 1 301 -11 653 172 6 38 chr13 7270366 7270444 -94602725 - L1MB3 LINE L1 -84 6099 6020 23 33 0 0 chr13 7270446 7270476 -94602693 + AT_rich Low_complexity Low_complexity 1 30 0 689 218 0 0 chr13 7270728 7270852 -94602317 + FLAM_A SINE Alu 1 124 -9 330 329 7 20 chr13 7270928 7271022 -94602147 - MARNA DNA Mariner -179 407 314 1439 91 68 27 chr13 7271022 7271243 -94601926 - MER30 DNA MER1_type 0 230 1 330 329 7 20 chr13 7271243 7271294 -94601875 - MARNA DNA Mariner -272 314 264 384 301 0 32 chr13 7271575 7271698 -94601471 - L2 LINE L2 -5 3267 3149 2236 93 3 0 chr13 7272689 7272978 -94600191 - AluSp SINE Alu -23 290 1 2537 57 0 0 chr13 7273821 7274122 -94599047 - AluY SINE Alu -10 301 1 225 0 0 0 chr13 7274593 7274618 -94598551 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2069 125 0 0 chr13 7274618 7274898 -94598271 - AluSx SINE Alu -32 280 1 318 238 30 50 chr13 7275918 7276019 -94597150 + MIR SINE MIR 164 262 0 1056 288 95 29 chr13 7276719 7277032 -94596137 - L1ME3 LINE L1 -211 5951 5660 2201 101 7 14 chr13 7277032 7277328 -94595841 + AluSg SINE Alu 1 294 -16 1056 288 95 29 chr13 7277328 7277823 -94595346 - L1ME3 LINE L1 -502 5660 5054 2307 100 0 3 chr13 7277823 7278123 -94595046 + AluSg SINE Alu 1 299 -11 1056 288 95 29 chr13 7278123 7278427 -94594742 - L1ME3 LINE L1 -1108 5054 4771 490 232 21 0 chr13 7279234 7279304 -94593865 - MER69 DNA AcHobo -2 2524 2457 1731 163 22 0 chr13 7279304 7279581 -94593588 + AluJb SINE Alu 1 283 -29 490 232 21 0 chr13 7279581 7279652 -94593517 - MER69 DNA AcHobo -69 2457 2380 288 183 157 166 chr13 7280016 7280251 -94592918 - MIR SINE MIR -24 238 6 24 0 0 0 chr13 7281289 7281313 -94591856 + AT_rich Low_complexity Low_complexity 1 24 0 334 276 163 44 chr13 7281481 7281684 -94591485 - MIR SINE MIR -1 261 35 1748 172 3 7 chr13 7282566 7282863 -94590306 - AluJb SINE Alu -16 296 1 21 36 0 0 chr13 7282906 7282934 -94590235 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr13 7283098 7283146 -94590023 + AT_rich Low_complexity Low_complexity 1 48 0 1120 196 84 39 chr13 7283382 7283521 -94589648 - MLT1F LTR MaLR 0 542 411 1791 159 77 11 chr13 7283521 7283873 -94589296 - THE1C LTR MaLR 0 375 1 1120 196 84 39 chr13 7283873 7284018 -94589151 - MLT1F LTR MaLR -131 411 245 352 327 155 9 chr13 7285596 7285945 -94587224 - L2 LINE L2 -26 3287 2888 3701 172 87 38 chr13 7287964 7288895 -94584274 - L1MB8 LINE L1 0 6178 5200 599 216 36 0 chr13 7288895 7289006 -94584163 - FLAM_A SINE Alu -18 115 1 3701 172 87 38 chr13 7289006 7289109 -94584060 - L1MB8 LINE L1 -978 5200 5104 2864 3 0 0 chr13 7289870 7290175 -94582994 + AluYa5 SINE Alu 1 305 -6 402 236 217 19 chr13 7290724 7290885 -94582284 + L2 LINE L2 3121 3313 0 1008 221 206 48 chr13 7291097 7291443 -94581726 - MLT1F LTR MaLR -8 534 96 1691 177 3 29 chr13 7291443 7291616 -94581553 - AluJo SINE Alu -9 303 140 2421 70 0 19 chr13 7291616 7291928 -94581241 - AluY SINE Alu -5 306 1 1691 177 3 29 chr13 7291928 7292065 -94581104 - AluJo SINE Alu -172 140 1 1008 221 206 48 chr13 7292065 7292179 -94580990 - MLT1F LTR MaLR -446 96 1 264 300 100 0 chr13 7292529 7292629 -94580540 - MIR SINE MIR -53 209 100 2079 131 14 0 chr13 7293018 7293315 -94579854 - AluSx SINE Alu -11 301 1 2237 104 3 0 chr13 7293315 7293612 -94579557 - AluSg SINE Alu -12 298 1 2258 93 30 3 chr13 7293640 7293941 -94579228 - AluSp SINE Alu -4 309 1 190 237 26 0 chr13 7294224 7294262 -94578907 - L2 LINE L2 -20 3252 3214 238 135 0 0 chr13 7294449 7294486 -94578683 + L1MA4A LINE L1 6173 6209 -94 226 187 93 27 chr13 7295037 7295112 -94578057 + HAL1b LINE L1 1228 1307 -41 3809 105 58 27 chr13 7295117 7295737 -94577432 - L1MA4A LINE L1 -8 6295 5657 3948 181 45 36 chr13 7296054 7296096 -94577073 - L1MB3 LINE L1 -1 6182 6142 2260 84 7 10 chr13 7296096 7296393 -94576776 - AluSx SINE Alu -16 296 1 3948 181 45 36 chr13 7296393 7296737 -94576432 - L1MB3 LINE L1 -41 6142 5803 8386 117 56 5 chr13 7296737 7297974 -94575195 + HSMAR2 DNA Mariner 2 1301 -1 3948 181 45 36 chr13 7297974 7298638 -94574531 - L1MB3 LINE L1 -380 5803 5021 425 251 160 76 chr13 7299555 7299830 -94573339 + MER102b DNA MER1_type 17 314 -27 2094 198 97 20 chr13 7300063 7300558 -94572611 - MLT2B3 LTR ERVL -21 533 1 2078 138 81 3 chr13 7301753 7302101 -94571068 - THE1C LTR MaLR 0 375 1 394 264 165 39 chr13 7302395 7302835 -94570334 - L1ME LINE L1 -519 5645 5127 2099 112 49 0 chr13 7302835 7303121 -94570048 - AluSx SINE Alu -12 300 1 394 264 165 39 chr13 7303121 7303177 -94569992 - L1ME LINE L1 -1037 5127 5079 384 218 34 0 chr13 7303266 7303413 -94569756 + (TA)n Simple_repeat Simple_repeat 2 153 0 230 149 0 21 chr13 7303419 7303466 -94569703 + Alu SINE Alu 59 104 -198 2091 137 3 0 chr13 7303683 7303983 -94569186 - AluSx SINE Alu -11 301 1 225 151 57 38 chr13 7304221 7304274 -94568895 - L2 LINE L2 -12 3260 3207 2499 56 0 34 chr13 7304456 7304778 -94568391 + AluY SINE Alu 1 311 0 23 33 0 0 chr13 7305343 7305373 -94567796 + AT_rich Low_complexity Low_complexity 1 30 0 230 232 18 0 chr13 7306090 7306146 -94567023 + MLT1B LTR MaLR 334 390 0 204 97 0 0 chr13 7306566 7306597 -94566572 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 68 7 58 chr13 7306965 7307275 -94565894 + AluY SINE Alu 5 298 -13 317 324 14 0 chr13 7307704 7307825 -94565344 + L1ME LINE L1 321 445 -5625 435 248 101 0 chr13 7307872 7307981 -94565188 + L1ME LINE L1 2667 2786 -3294 717 248 85 30 chr13 7307983 7308314 -94564855 + L1MC4 LINE L1 7689 8037 -5 232 168 65 194 chr13 7308990 7309145 -94564024 + LTR67 LTR ERVL 46 180 -377 2755 176 53 4 chr13 7309338 7309865 -94563304 - L1MB5 LINE L1 -50 6124 5572 413 165 12 12 chr13 7309866 7309951 -94563218 + LTR67 LTR ERVL 471 555 -2 239 328 0 0 chr13 7309953 7310014 -94563155 - MIR SINE MIR -113 149 89 2623 52 3 3 chr13 7310433 7310743 -94562426 - AluY SINE Alu -1 310 1 3327 179 104 20 chr13 7312060 7312771 -94560398 - MER21A LTR ERV1 -160 771 1 287 257 29 0 chr13 7313628 7313698 -94559471 + GA-rich Low_complexity Low_complexity 2 73 0 21 0 0 0 chr13 7314497 7314518 -94558651 + AT_rich Low_complexity Low_complexity 1 21 0 4127 160 48 9 chr13 7314524 7315770 -94557399 - L1MA8 LINE L1 -274 6017 4723 312 221 26 13 chr13 7316258 7316335 -94556834 + MER116 DNA Mariner 3 80 0 321 249 86 96 chr13 7316629 7316761 -94556408 - L1MB5 LINE L1 -847 5299 5167 1966 142 3 7 chr13 7316761 7317057 -94556112 - AluJb SINE Alu -15 297 3 321 249 86 96 chr13 7317057 7317237 -94555932 - L1MB5 LINE L1 -979 5167 4990 2532 53 0 22 chr13 7317664 7317982 -94555187 - AluY SINE Alu 0 311 1 471 270 64 60 chr13 7318612 7318845 -94554324 + MIR SINE MIR 15 248 -14 847 156 0 8 chr13 7318997 7319125 -94554044 - FLAM_C SINE Alu -5 128 2 1791 163 3 29 chr13 7319230 7319536 -94553633 + AluJb SINE Alu 2 299 -13 1517 191 73 102 chr13 7319537 7319583 -94553586 - Charlie5 DNA MER1_type -1295 1329 1283 1666 172 10 10 chr13 7319583 7319886 -94553283 + AluJb SINE Alu 3 305 -7 1517 191 73 102 chr13 7319886 7320387 -94552782 - Charlie5 DNA MER1_type -1341 1283 798 800 205 0 13 chr13 7320387 7320538 -94552631 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 7320534 7320577 -94552592 - Tigger2 DNA MER2_type -253 2465 2423 * 1575 150 71 11 chr13 7320630 7320910 -94552259 + Tigger2 DNA MER2_type 2422 2718 0 2979 198 85 9 chr13 7320919 7321247 -94551922 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 7321247 7321610 -94551559 + MSTD LTR MaLR 1 396 0 2979 198 85 9 chr13 7321610 7321974 -94551195 - Charlie5 DNA MER1_type -2136 488 45 2149 101 7 20 chr13 7322089 7322387 -94550782 + AluSg SINE Alu 1 294 -16 789 278 74 20 chr13 7322402 7322859 -94550310 - L1ME LINE L1 -578 5592 5119 2089 117 10 3 chr13 7322882 7323181 -94549988 + AluSg SINE Alu 1 301 -9 282 264 41 66 chr13 7375104 7375225 -94497944 - L2 LINE L2 -5 3267 3150 2179 56 4 4 chr13 7376460 7376727 -94496442 - AluY SINE Alu -6 305 39 1847 172 52 8 chr13 7376896 7377262 -94495907 - MLT1B LTR MaLR -8 382 1 1920 149 3 3 chr13 7378219 7378501 -94494668 - AluSx SINE Alu -30 282 1 824 136 8 0 chr13 7379800 7379932 -94493237 - FLAM_C SINE Alu 0 133 1 426 253 69 90 chr13 7380002 7380235 -94492934 + MLT1K LTR MaLR 357 584 -4 1761 174 0 19 chr13 7381200 7381517 -94491652 - AluJo SINE Alu -1 311 1 192 277 50 34 chr13 7381718 7381837 -94491332 - L2 LINE L2 -1834 1480 1360 521 244 60 30 chr13 7381899 7382067 -94491102 - MLT1K LTR MaLR -4 584 412 32 0 0 23 chr13 7383653 7383667 -94489502 + AT_rich Low_complexity Low_complexity 1 14 -28 2796 25 0 10 chr13 7383667 7383981 -94489188 - AluY SINE Alu 0 311 1 32 0 0 23 chr13 7383981 7384009 -94489160 + AT_rich Low_complexity Low_complexity 14 42 0 4091 171 21 39 chr13 7384203 7384957 -94488212 - MER21B LTR ERV1 -22 841 101 1504 116 5 5 chr13 7384974 7385189 -94487980 - AluSp SINE Alu -6 307 93 8830 156 18 39 chr13 7385300 7386060 -94487109 - L1 LINE L1 -769 5377 4603 2179 110 21 0 chr13 7386060 7386350 -94486819 - AluSx SINE Alu -16 296 1 8830 156 18 39 chr13 7386350 7387301 -94485868 - L1 LINE L1 -1543 4603 3701 787 170 0 99 chr13 7387402 7387614 -94485555 + L1MA4 LINE L1 6110 6300 0 2252 92 7 26 chr13 7388003 7388308 -94484861 + AluSc SINE Alu 1 299 -10 10655 190 12 12 chr13 7388309 7389768 -94483401 + L1PB1 LINE L1 2927 4385 -1766 216 0 0 0 chr13 7389768 7389792 -94483377 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10655 190 12 12 chr13 7389792 7391549 -94481620 + L1PB1 LINE L1 4385 6151 0 295 170 0 4 chr13 7391658 7391716 -94481453 - FLAM_A SINE Alu -81 51 9 284 280 100 13 chr13 7392056 7392206 -94480963 - L2 LINE L2 -40 3273 3111 183 261 109 11 chr13 7392526 7392618 -94480551 + MIR SINE MIR 92 192 -70 2142 104 0 4 chr13 7392756 7393077 -94480092 - AluSc SINE Alu 0 320 1 1374 146 5 5 chr13 7393107 7393319 -94479850 - AluSx SINE Alu -100 212 1 1154 189 129 63 chr13 7393550 7393836 -94479333 - AluJo SINE Alu 0 312 8 726 227 164 54 chr13 7395330 7395665 -94477504 - MER93b LTR ERV1 0 373 2 3468 179 48 8 chr13 7395701 7396354 -94476815 + LTR58 LTR ERV1 1 679 0 2317 78 0 0 chr13 7397345 7397621 -94475548 + AluY SINE Alu 16 292 -15 297 0 0 0 chr13 7397621 7397654 -94475515 + (CA)n Simple_repeat Simple_repeat 2 34 0 258 212 45 15 chr13 7398033 7398099 -94475070 - L2 LINE L2 0 3313 3246 2324 98 3 0 chr13 7398121 7398416 -94474753 + AluSq SINE Alu 3 298 -15 21 0 0 0 chr13 7398566 7398587 -94474582 + AT_rich Low_complexity Low_complexity 1 21 0 1321 226 129 12 chr13 7399643 7400045 -94473124 - LTR2 LTR ERV1 0 449 1 228 389 87 0 chr13 7400096 7400222 -94472947 - L2 LINE L2 0 3272 3136 2108 166 5 27 chr13 7401307 7401498 -94471671 - MLT1A1 LTR MaLR 0 365 184 2660 108 14 0 chr13 7401498 7401868 -94471301 + THE1C LTR MaLR 1 375 0 2108 166 5 27 chr13 7401868 7402049 -94471120 - MLT1A1 LTR MaLR -181 184 1 830 283 94 11 chr13 7402112 7402270 -94470899 + L2 LINE L2 2920 3063 -250 288 0 0 0 chr13 7402270 7402302 -94470867 + (CA)n Simple_repeat Simple_repeat 2 33 0 830 283 94 11 chr13 7402302 7402503 -94470666 + L2 LINE L2 3063 3309 -4 258 274 266 0 chr13 7403794 7403907 -94469262 + L2 LINE L2 3126 3268 -4 477 304 47 16 chr13 7404117 7404308 -94468861 + MIR SINE MIR 65 261 -1 488 230 0 7 chr13 7404636 7404788 -94468381 + (CA)n Simple_repeat Simple_repeat 2 152 0 568 135 0 10 chr13 7404790 7404886 -94468283 + FRAM SINE Alu 71 165 -11 363 309 47 7 chr13 7405442 7405591 -94467578 + MIR SINE MIR 65 219 -43 920 264 60 23 chr13 7405900 7406263 -94466906 - L1ME2 LINE L1 -6 6158 5785 322 143 16 16 chr13 7407078 7407141 -94466028 + AluS SINE Alu 1 63 -238 1870 153 13 3 chr13 7407447 7407754 -94465415 - AluJb SINE Alu -2 310 1 2007 102 56 30 chr13 7407791 7408094 -94465075 - AluY SINE Alu 0 311 1 210 351 18 9 chr13 7408467 7408578 -94464591 - L2 LINE L2 -213 3059 2948 228 67 0 0 chr13 7408860 7408890 -94464279 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 184 0 0 chr13 7408890 7408928 -94464241 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 189 0 0 0 chr13 7408928 7408949 -94464220 + (GA)n Simple_repeat Simple_repeat 2 22 0 1549 190 0 32 chr13 7408952 7409236 -94463933 - AluJo SINE Alu -37 275 1 1145 264 105 87 chr13 7409714 7410408 -94462761 + MER21B LTR ERV1 8 714 -149 2484 100 73 36 chr13 7411982 7412393 -94460776 - MSTC LTR MaLR 0 428 3 282 242 74 21 chr13 7412429 7412524 -94460645 - LTR16A1 LTR ERVL -179 278 179 1205 144 24 5 chr13 7412872 7413080 -94460089 + LTR49 LTR ERV1 1 212 -383 2181 152 8 0 chr13 7413080 7413436 -94459733 + L1MA5A LINE L1 5899 6257 -40 183 139 0 0 chr13 7415434 7415470 -94457699 + (CTG)n Simple_repeat Simple_repeat 1 36 0 205 271 0 0 chr13 7416638 7416686 -94456483 - L2 LINE L2 -4 3268 3221 221 211 88 0 chr13 7416885 7416942 -94456227 - MIR SINE MIR -109 153 92 2762 242 49 73 chr13 7417404 7418823 -94454346 + L1M1 LINE L1 18 2332 -5233 870 184 0 0 chr13 7419157 7419298 -94453871 + FRAM SINE Alu 10 150 -26 387 0 0 0 chr13 7419325 7419368 -94453801 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr13 7419367 7419390 -94453779 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 305 264 107 8 chr13 7420407 7420528 -94452641 - MIR3 SINE MIR -18 190 58 813 145 34 101 chr13 7420645 7420852 -94452317 - MER34C LTR ERV1 -33 552 360 619 164 10 0 chr13 7422036 7422140 -94451029 + FLAM_C SINE Alu 1 105 -38 3354 137 29 18 chr13 7422140 7422688 -94450481 - MER41C LTR ERV1 0 554 1 275 189 0 19 chr13 7422695 7422748 -94450421 + MER34B LTR ERV1 514 565 0 2557 212 18 21 chr13 7423161 7423765 -94449404 + L1MB7 LINE L1 4448 5049 -1097 246 157 118 0 chr13 7423764 7423815 -94449354 - L1M4 LINE L1 -1021 5125 5069 * 2696 194 50 6 chr13 7423827 7424595 -94448574 + L1MB7 LINE L1 5069 5904 -280 * 5649 113 14 3 chr13 7424592 7425484 -94447685 + L1MA3 LINE L1 5186 6087 -218 2331 95 10 0 chr13 7426957 7427261 -94445908 - AluSg SINE Alu -3 307 1 200 216 21 31 chr13 7427483 7427580 -94445589 + (TA)n Simple_repeat Simple_repeat 2 97 0 3188 127 6 27 chr13 7428030 7428543 -94444626 - L1MC1 LINE L1 -457 5876 5375 1103 165 0 6 chr13 7428544 7428720 -94444449 - AluJo SINE Alu -137 175 1 348 318 85 31 chr13 7428884 7429013 -94444156 - L2 LINE L2 0 3272 3137 419 176 0 0 chr13 7430529 7430597 -94442572 - AluJ/FLAM SINE Alu -243 69 2 562 248 9 0 chr13 7430655 7430764 -94442405 - MER81 DNA DNA 0 114 5 1932 113 28 10 chr13 7431087 7431378 -94441791 + AluSx SINE Alu 1 296 -16 264 100 0 0 chr13 7431987 7432027 -94441142 + (A)n Simple_repeat Simple_repeat 1 40 0 554 197 171 0 chr13 7432437 7432589 -94440580 - MER45A DNA AcHobo 0 178 1 360 257 208 20 chr13 7434321 7434523 -94438646 + L2 LINE L2 2549 2788 -526 2202 118 7 0 chr13 7435164 7435469 -94437700 + AluSx SINE Alu 1 307 -5 2364 83 3 26 chr13 7435493 7435806 -94437363 + AluY SINE Alu 1 306 -5 501 62 0 0 chr13 7435808 7435873 -94437296 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1812 172 0 17 chr13 7437358 7437654 -94435515 + AluJo SINE Alu 1 291 -21 290 297 88 88 chr13 7437768 7438064 -94435105 + L3 LINE CR1 514 809 -768 296 263 70 19 chr13 7438184 7438378 -94434791 + L3 LINE CR1 1022 1274 -303 905 265 70 42 chr13 7438437 7438959 -94434210 + MLT1H1 LTR MaLR 10 555 0 2046 158 0 0 chr13 7438982 7439292 -94433877 + AluSx SINE Alu 1 310 -2 606 235 82 6 chr13 7439320 7439490 -94433679 + MIR SINE MIR 64 246 -16 211 340 98 13 chr13 7439503 7439656 -94433513 + L3 LINE CR1 1317 1482 -95 613 268 137 38 chr13 7441737 7442084 -94431085 + MLT1J1 LTR MaLR 1 369 -77 1978 199 3 8 chr13 7442084 7442451 -94430718 + MLT1A1 LTR MaLR 1 365 0 613 268 137 38 chr13 7442451 7442533 -94430636 + MLT1J1 LTR MaLR 369 441 -5 1572 202 21 12 chr13 7443358 7443685 -94429484 + MER70A LTR ERVL 1 330 -142 1234 192 41 50 chr13 7445218 7445535 -94427634 + MLT1C LTR MaLR 1 314 -153 1755 167 17 7 chr13 7446651 7447042 -94426127 + AluSx SINE Alu 2 395 0 505 161 39 8 chr13 7447164 7447294 -94425875 + GA-rich Low_complexity Low_complexity 1 134 0 382 36 36 0 chr13 7447359 7447415 -94425754 + (ATG)n Simple_repeat Simple_repeat 3 60 0 297 89 0 0 chr13 7448450 7448495 -94424674 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 224 37 19 chr13 7448989 7449096 -94424073 + (TA)n Simple_repeat Simple_repeat 2 110 0 204 128 0 26 chr13 7450777 7450816 -94422353 + (CGG)n Simple_repeat Simple_repeat 3 40 0 24 32 0 0 chr13 7451045 7451076 -94422093 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 7451422 7451444 -94421725 + GC_rich Low_complexity Low_complexity 1 22 0 200 188 0 0 chr13 7452873 7452905 -94420264 + polypyrimidine Low_complexity Low_complexity 1 32 0 201 39 0 0 chr13 7452910 7452936 -94420233 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 28 48 0 0 chr13 7455022 7455064 -94418105 + AT_rich Low_complexity Low_complexity 1 42 0 435 226 61 0 chr13 7457282 7457397 -94415772 - MIR SINE MIR 0 262 141 224 276 0 0 chr13 7457418 7457476 -94415693 + CT-rich Low_complexity Low_complexity 2 59 0 2650 166 6 32 chr13 7457876 7457922 -94415247 - L1MB1 LINE L1 0 6168 6122 2301 100 7 3 chr13 7457922 7458221 -94414948 - AluSx SINE Alu -10 302 3 2650 166 6 32 chr13 7458221 7458680 -94414489 - L1MB1 LINE L1 -46 6122 5676 2150 105 7 0 chr13 7459485 7459770 -94413399 - AluSx SINE Alu -25 287 1 2085 124 0 10 chr13 7460269 7460567 -94412602 - AluSx SINE Alu -17 295 1 2400 145 17 2 chr13 7460570 7460978 -94412191 - L1MB3 LINE L1 -45 6138 5725 911 302 114 16 chr13 7460975 7461459 -94411710 - L1MC4a LINE L1 -1982 5826 5296 * 1191 242 11 0 chr13 7461990 7462254 -94410915 + MLT1A1 LTR MaLR 2 268 -97 1712 139 14 75 chr13 7462254 7462622 -94410547 - MER4A LTR ERV1 0 664 261 597 89 89 0 chr13 7462622 7462712 -94410457 - MER4A LTR ERV1 -566 98 1 709 121 0 0 chr13 7462712 7462811 -94410358 + MLT1A1 LTR MaLR 265 363 -2 1067 197 19 57 chr13 7462912 7463201 -94409968 - L1P5 LINE L1 -430 5724 5441 21 36 0 0 chr13 7463842 7463870 -94409299 + AT_rich Low_complexity Low_complexity 1 28 0 2176 71 46 4 chr13 7463874 7464155 -94409014 - AluY SINE Alu -18 293 1 304 285 122 14 chr13 7464255 7464356 -94408813 + L1MC/D LINE L1 4076 4165 -1981 2035 214 13 5 chr13 7464356 7464749 -94408420 - MSTD LTR MaLR 0 396 1 304 285 122 14 chr13 7464749 7464868 -94408301 + L1MC/D LINE L1 4165 4320 -1826 2142 125 10 0 chr13 7464872 7465168 -94408001 + AluSx SINE Alu 1 299 -13 1860 287 95 34 chr13 7465275 7465809 -94407360 + L1M3c LINE L1 1046 1546 -4850 1939 170 0 0 chr13 7465809 7466098 -94407071 + AluJb SINE Alu 1 289 -23 1860 287 95 34 chr13 7466098 7466193 -94406976 + L1M3c LINE L1 1546 1634 -4762 2547 159 11 23 chr13 7466193 7466632 -94406537 - Tigger2a DNA MER2_type 0 434 1 1860 287 95 34 chr13 7466632 7467087 -94406082 + L1M3c LINE L1 1634 2060 -4336 2331 108 0 0 chr13 7467087 7467384 -94405785 - AluSx SINE Alu -15 297 1 1860 287 95 34 chr13 7467384 7467724 -94405445 + L1M3c LINE L1 2060 2519 -3877 5763 244 81 30 chr13 7467725 7468152 -94405017 + L1ME1 LINE L1 3100 3504 -2662 2262 90 0 50 chr13 7468152 7468473 -94404696 - AluSg SINE Alu -5 305 1 5763 244 81 30 chr13 7468473 7469545 -94403624 + L1ME1 LINE L1 3504 4519 -1647 2231 119 0 6 chr13 7469545 7469878 -94403291 + AluSg SINE Alu 1 310 0 5763 244 81 30 chr13 7469878 7471222 -94401947 + L1ME1 LINE L1 4519 6103 -63 2637 55 0 0 chr13 7471222 7471532 -94401637 - AluY SINE Alu -1 310 1 5763 244 81 30 chr13 7471532 7471600 -94401569 + L1ME1 LINE L1 6103 6166 0 750 292 97 39 chr13 7471688 7472174 -94400995 + LTR33 LTR ERVL 8 521 0 228 312 18 9 chr13 7472264 7472373 -94400796 + L1P LINE L1 4482 4591 -1555 247 286 98 31 chr13 7472547 7472771 -94400398 + L1MC/D LINE L1 4812 5050 -1096 1855 167 74 24 chr13 7472800 7473177 -94399992 - MSTD LTR MaLR 0 396 1 1136 195 80 58 chr13 7473200 7473513 -94399656 + MER2 DNA MER2_type 1 320 -25 1323 264 47 10 chr13 7473619 7474028 -94399141 + L1MC/D LINE L1 5270 5691 -747 362 245 64 107 chr13 7474645 7474878 -94398291 + MER65-int LTR ERV1 81 303 -4568 238 243 49 60 chr13 7475059 7475244 -94397925 - MER54A LTR ERVL -618 283 101 272 198 0 88 chr13 7475244 7475335 -94397834 + MER65-int LTR ERV1 656 738 -4133 1785 179 3 7 chr13 7476347 7476643 -94396526 + AluJo SINE Alu 1 295 -17 5134 112 11 3 chr13 7476756 7477509 -94395660 - L1PA13 LINE L1 0 6163 5405 1707 178 7 13 chr13 7478887 7479185 -94393984 + AluJo SINE Alu 1 296 -16 2153 102 0 7 chr13 7480329 7480638 -94392531 + AluSx SINE Alu 1 307 0 1125 168 0 5 chr13 7480649 7480839 -94392330 + L1PB4 LINE L1 5966 6154 -2 2143 100 42 0 chr13 7481230 7481519 -94391650 + AluSx SINE Alu 1 301 -11 6223 85 11 6 chr13 7482058 7482905 -94390264 - L1PA11 LINE L1 -1 6173 5323 1886 122 16 56 chr13 7483411 7483715 -94389454 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr13 7483715 7483736 -94389433 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 0 10 chr13 7484330 7484636 -94388533 + AluSx SINE Alu 1 303 -9 2443 85 7 3 chr13 7484892 7485199 -94387970 + AluSq SINE Alu 1 308 -5 189 107 0 0 chr13 7486511 7486539 -94386630 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 45 0 0 0 chr13 7486918 7486963 -94386206 + AT_rich Low_complexity Low_complexity 1 45 0 1920 116 49 0 chr13 7486972 7487239 -94385930 + AluSx SINE Alu 1 280 -32 204 97 0 0 chr13 7487239 7487270 -94385899 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 243 222 0 0 chr13 7487319 7487373 -94385796 + L2 LINE L2 3213 3266 -6 2533 132 89 22 chr13 7487980 7488428 -94384741 + LTR64 LTR ERVK 1 478 -80 927 118 0 29 chr13 7488451 7488587 -94384582 - FLAM_C SINE Alu -1 132 1 1841 171 0 0 chr13 7488628 7488914 -94384255 - AluJb SINE Alu -26 286 1 9122 161 72 14 chr13 7489099 7491561 -94381608 + L1PBa LINE L1 647 3345 -3517 442 241 61 30 chr13 7491749 7492002 -94381167 + MLT1L LTR MaLR 312 611 -4 801 261 31 52 chr13 7492765 7493152 -94380017 - L1MC5 LINE L1 -36 7925 7547 1325 219 28 100 chr13 7493204 7493390 -94379779 - L1MC5 LINE L1 -729 7232 7034 1974 110 7 0 chr13 7493390 7493703 -94379466 + AluSx SINE Alu 1 315 0 1325 219 28 100 chr13 7493703 7494095 -94379074 - L1MC5 LINE L1 -927 7034 6695 410 275 53 8 chr13 7494235 7494366 -94378803 + MIR SINE MIR 67 203 -59 23 0 0 0 chr13 7495213 7495236 -94377933 + AT_rich Low_complexity Low_complexity 1 23 0 233 100 0 0 chr13 7495574 7495604 -94377565 - MLT2D LTR ERVL -5 510 481 1565 158 0 19 chr13 7495674 7495934 -94377235 + AluJb SINE Alu 1 255 -57 341 170 0 0 chr13 7495937 7495990 -94377179 + AluJb SINE Alu 234 286 -16 1711 148 98 0 chr13 7496012 7496330 -94376839 - MLT2D LTR ERVL -65 349 1 1748 149 10 7 chr13 7496764 7497066 -94376103 + L1MC1 LINE L1 6030 6332 -1 22 0 0 0 chr13 7497106 7497128 -94376041 + AT_rich Low_complexity Low_complexity 1 22 0 2052 111 13 10 chr13 7497758 7498065 -94375104 - AluSx SINE Alu -4 308 1 517 253 141 72 chr13 7498620 7499131 -94374038 - MLT1H LTR MaLR 0 595 1 1339 153 48 34 chr13 7499410 7499704 -94373465 + L1MB7 LINE L1 5887 6184 0 520 243 181 35 chr13 7500263 7500489 -94372680 + MLT1L LTR MaLR 8 266 -349 2349 253 40 43 chr13 7500974 7501657 -94371512 - L1ME3 LINE L1 -41 6121 5441 2136 122 3 0 chr13 7501657 7501968 -94371201 - AluSx SINE Alu 0 312 1 2349 253 40 43 chr13 7501968 7502462 -94370707 - L1ME3 LINE L1 -721 5441 4947 1355 239 46 46 chr13 7502488 7502687 -94370482 - L1ME3 LINE L1 -1279 4867 4669 2218 110 0 0 chr13 7502687 7502997 -94370172 - AluSx SINE Alu -2 310 1 1355 239 46 46 chr13 7502997 7503295 -94369874 - L1ME3 LINE L1 -1476 4670 4370 1696 225 75 58 chr13 7503336 7503445 -94369724 - L1ME1 LINE L1 -5 6161 6055 1759 111 12 0 chr13 7503445 7503713 -94369456 + AluSx SINE Alu 38 308 0 1696 225 75 58 chr13 7503713 7504188 -94368981 - L1ME1 LINE L1 -111 6055 5566 237 303 17 17 chr13 7504193 7504312 -94368857 - L1ME3 LINE L1 -1755 4391 4273 700 240 98 62 chr13 7504554 7504891 -94368278 - MLT1L LTR MaLR -266 349 1 1256 162 81 0 chr13 7506957 7507191 -94365978 + AluSg SINE Alu 1 253 -57 363 132 0 0 chr13 7507746 7507814 -94365355 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1562 168 81 0 chr13 7507831 7508116 -94365053 - AluJo SINE Alu -4 308 1 2158 100 0 0 chr13 7508575 7508864 -94364305 - AluSg SINE Alu -16 294 6 2079 74 14 18 chr13 7509754 7510039 -94363130 + AluY SINE Alu 1 284 -27 391 165 70 52 chr13 7510141 7510256 -94362913 + L1PA16 LINE L1 6050 6166 0 2513 43 0 0 chr13 7510550 7510851 -94362318 - AluY SINE Alu -10 301 1 2312 92 0 0 chr13 7511042 7511346 -94361823 - AluSq SINE Alu -9 304 1 235 397 7 0 chr13 7511395 7511531 -94361638 - L2 LINE L2 -946 2368 2232 844 257 141 27 chr13 7511547 7511959 -94361210 - MLT1C LTR MaLR -8 459 1 270 56 0 0 chr13 7512702 7512738 -94360431 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 360 0 0 chr13 7514952 7515041 -94358128 + MER5A DNA MER1_type 18 106 -83 852 220 47 19 chr13 7515336 7515550 -94357619 - MIR SINE MIR 0 262 43 1206 164 136 82 chr13 7515633 7515933 -94357236 + MSTD LTR MaLR 1 320 -76 1886 190 64 11 chr13 7515933 7516307 -94356862 - MSTD LTR MaLR 0 396 3 1206 164 136 82 chr13 7516307 7516323 -94356846 + MSTD LTR MaLR 320 334 -62 290 57 0 0 chr13 7516323 7516388 -94356781 + Alu SINE Alu 247 304 0 25 31 0 0 chr13 7516388 7516420 -94356749 + AT_rich Low_complexity Low_complexity 1 32 0 283 267 91 3 chr13 7516587 7516691 -94356478 + Charlie8 DNA MER1_type 2 79 -2338 186 322 17 43 chr13 7516793 7516853 -94356316 + L2 LINE L2 3123 3180 -92 2240 104 3 0 chr13 7516853 7517162 -94356007 + AluSp SINE Alu 1 310 -3 186 322 17 43 chr13 7517162 7517216 -94355953 + L2 LINE L2 3180 3234 -38 700 282 25 0 chr13 7518116 7518279 -94354890 + MIR SINE MIR 47 213 -49 1960 149 0 0 chr13 7519692 7520000 -94353169 + AluSx SINE Alu 1 308 -4 1455 167 0 4 chr13 7520202 7520453 -94352716 - AluSx SINE Alu -13 299 50 211 196 0 39 chr13 7520824 7520875 -94352294 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 220 347 0 13 chr13 7520902 7520977 -94352192 + L2 LINE L2 3163 3236 -36 2189 106 0 3 chr13 7521001 7521304 -94351865 - AluSx SINE Alu -10 302 1 261 0 0 0 chr13 7521353 7521382 -94351787 + (CA)n Simple_repeat Simple_repeat 2 30 0 2305 58 3 0 chr13 7522108 7522399 -94350770 + AluY SINE Alu 20 311 0 565 231 37 15 chr13 7522666 7522800 -94350369 + MIR SINE MIR 49 185 -77 389 273 116 8 chr13 7523824 7523945 -94349224 + MIR SINE MIR 50 183 -79 382 216 27 99 chr13 7524191 7524302 -94348867 + MER20 DNA MER1_type 1 103 -116 218 274 68 27 chr13 7525208 7525281 -94347888 + MIR SINE MIR 127 202 -60 1972 103 0 62 chr13 7525309 7525630 -94347539 + AluSx SINE Alu 1 301 -11 298 350 13 38 chr13 7526068 7526225 -94346944 + MIR SINE MIR 50 202 -60 197 307 71 24 chr13 7526327 7526454 -94346715 + MIR SINE MIR 60 192 -70 972 165 6 6 chr13 7526644 7526820 -94346349 - FRAM SINE Alu 0 176 1 689 137 24 8 chr13 7528453 7528577 -94344592 + MER31B LTR ERV1 1 126 -340 * 718 133 147 7 chr13 7528554 7528704 -94344465 + MER31B LTR ERV1 243 413 -53 1970 153 80 28 chr13 7528714 7529098 -94344071 + MSTB1 LTR MaLR 7 410 -22 1680 95 4 9 chr13 7529098 7529329 -94343840 - MER30 DNA MER1_type 0 230 1 320 155 28 14 chr13 7529361 7529432 -94343737 + MER31B LTR ERV1 395 466 0 466 235 120 54 chr13 7529440 7529933 -94343236 - MLT1H1 LTR MaLR -29 566 4 1844 117 32 14 chr13 7529987 7530290 -94342879 + AluSx SINE Alu 5 312 0 510 198 18 0 chr13 7530392 7530503 -94342666 + L1MD3 LINE L1 6919 7031 -964 944 162 65 142 chr13 7530615 7530967 -94342202 + MER51C LTR ERV1 326 640 0 299 235 0 0 chr13 7530980 7531048 -94342121 + L1MC3 LINE L1 7029 7096 -689 325 265 31 10 chr13 7531049 7531147 -94342022 + MLT1F1 LTR MaLR 35 134 -433 2463 147 46 31 chr13 7531150 7531559 -94341610 + L1MC3 LINE L1 7205 7623 -162 2463 63 0 0 chr13 7531559 7531861 -94341308 + AluY SINE Alu 1 302 -9 2463 147 46 31 chr13 7531861 7531906 -94341263 + L1MC3 LINE L1 7623 7666 -119 1359 189 71 53 chr13 7531930 7532135 -94341034 - MER2 DNA MER2_type 0 344 129 1965 125 0 10 chr13 7532135 7532440 -94340729 + AluSx SINE Alu 11 312 0 1359 189 71 53 chr13 7532440 7532572 -94340597 - MER2 DNA MER2_type -215 129 1 219 146 0 0 chr13 7582829 7582870 -94290299 + (TA)n Simple_repeat Simple_repeat 1 41 0 1843 139 17 24 chr13 7582873 7583168 -94290001 - AluSc SINE Alu -16 293 1 379 287 72 34 chr13 7583181 7583418 -94289751 - L1M4 LINE L1 -2130 4016 3771 638 279 54 38 chr13 7583447 7583874 -94289295 - L1M4 LINE L1 -2899 3247 2814 304 258 112 0 chr13 7584317 7584406 -94288763 - L1M4 LINE L1 -3319 2827 2729 2244 124 0 0 chr13 7584407 7584714 -94288455 - AluSx SINE Alu -5 307 1 1208 194 41 32 chr13 7584714 7585059 -94288110 - L1M4 LINE L1 -1100 5046 4699 1040 241 119 17 chr13 7585190 7585534 -94287635 + MLT1G1 LTR MaLR 3 381 -214 2480 85 0 3 chr13 7585766 7586072 -94287097 + AluSc SINE Alu 1 305 -4 1872 176 0 0 chr13 7586372 7586661 -94286508 + AluJb SINE Alu 4 292 -20 499 314 54 46 chr13 7586737 7586998 -94286171 + L3b LINE CR1 1190 1452 -131 188 167 0 24 chr13 7587149 7587191 -94285978 + L2 LINE L2 1698 1738 -1576 195 42 0 0 chr13 7588449 7588473 -94284696 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 714 116 0 0 chr13 7588477 7588572 -94284597 - AluSg/x SINE Alu -35 277 183 2460 87 6 0 chr13 7589012 7589323 -94283846 + AluSq SINE Alu 1 313 0 185 262 0 0 chr13 7589645 7589687 -94283482 + MIR SINE MIR 85 126 -136 513 136 0 0 chr13 7589698 7589801 -94283368 + (TG)n Simple_repeat Simple_repeat 1 103 0 25 75 0 0 chr13 7590290 7590343 -94282826 + GC_rich Low_complexity Low_complexity 1 53 0 219 175 0 35 chr13 7590631 7590688 -94282481 + (CGGGG)n Simple_repeat Simple_repeat 4 58 0 339 203 0 0 chr13 7591199 7591273 -94281896 + (CA)n Simple_repeat Simple_repeat 2 75 0 989 284 95 14 chr13 7591762 7592205 -94280964 - L2 LINE L2 -612 2702 2224 636 190 41 24 chr13 7592205 7592376 -94280793 + MER45A DNA AcHobo 1 174 -4 1110 242 85 20 chr13 7592400 7592835 -94280334 - L2 LINE L2 -1154 2160 1700 309 262 83 14 chr13 7592848 7593057 -94280112 - L2 LINE L2 -2761 553 240 355 230 110 10 chr13 7593541 7593641 -94279528 - L2 LINE L2 -13 3300 3191 222 273 0 0 chr13 7593877 7593954 -94279215 + (TTTA)n Simple_repeat Simple_repeat 3 79 0 1329 91 6 6 chr13 7594184 7594360 -94278809 - AluSc SINE Alu -124 185 10 253 295 103 0 chr13 7594555 7594633 -94278536 - MIR3 SINE MIR -15 193 108 1754 161 33 4 chr13 7596016 7596325 -94276844 + AluSx SINE Alu 1 317 0 1921 143 20 7 chr13 7596335 7596629 -94276540 + AluJo SINE Alu 1 298 -14 217 235 39 0 chr13 7598576 7598627 -94274542 - L2 LINE L2 -680 2634 2582 1240 197 55 3 chr13 7598883 7599173 -94273996 + MER33 DNA MER1_type 11 315 -9 211 272 80 74 chr13 7599218 7599380 -94273789 - MIR3 SINE MIR -11 197 35 4769 132 13 9 chr13 7600497 7601250 -94271919 - L1MC1 LINE L1 -246 6087 5332 2534 73 0 0 chr13 7601250 7601553 -94271616 - AluY SINE Alu -8 303 1 1770 88 0 0 chr13 7601553 7601770 -94271399 - AluSc SINE Alu -20 289 73 978 69 0 0 chr13 7601772 7601888 -94271281 - AluSc SINE Alu -180 129 14 983 204 13 34 chr13 7601889 7602124 -94271045 - L1MC1 LINE L1 -816 5330 5101 248 269 78 91 chr13 7602494 7603306 -94269863 - L1MDa LINE L1 -856 2045 1285 541 304 57 0 chr13 7603802 7603996 -94269173 + MIR SINE MIR 37 241 -21 24 77 0 0 chr13 7604004 7604056 -94269113 + AT_rich Low_complexity Low_complexity 1 52 0 1290 178 5 5 chr13 7604192 7604405 -94268764 - AluJb SINE Alu -13 299 87 2136 104 10 13 chr13 7604415 7604714 -94268455 - AluSx SINE Alu -14 298 1 2307 57 0 4 chr13 7605213 7605523 -94267646 + AluY SINE Alu 1 309 0 2229 115 3 0 chr13 7606280 7606575 -94266594 + AluSx SINE Alu 1 296 -16 313 134 15 15 chr13 7606662 7606729 -94266440 + GA-rich Low_complexity Low_complexity 3 69 0 1947 191 70 27 chr13 7606817 7607257 -94265912 - LTR2B LTR ERV1 0 490 32 186 333 14 92 chr13 7608164 7608305 -94264864 - L2 LINE L2 -10 3262 3133 2112 117 3 10 chr13 7608473 7608792 -94264377 - AluSx SINE Alu 0 312 1 1516 189 42 95 chr13 7608820 7609146 -94264023 - L1ME1 LINE L1 -6 6160 5861 2280 102 17 0 chr13 7609146 7609439 -94263730 + AluSx SINE Alu 1 298 -14 1516 189 42 95 chr13 7609439 7609545 -94263624 - L1ME1 LINE L1 -305 5861 5751 200 200 18 0 chr13 7609826 7609881 -94263288 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 197 305 86 47 chr13 7609895 7610023 -94263146 - L2 LINE L2 -2 3270 3138 3428 121 74 3 chr13 7610723 7611293 -94261876 + LTR24C LTR ERV1 1 610 -25 830 184 0 0 chr13 7611293 7611434 -94261735 + FLAM_A SINE Alu 1 141 -1 311 53 0 0 chr13 7611436 7611474 -94261695 + LTR24C LTR ERV1 598 635 0 1545 167 108 7 chr13 7611632 7611901 -94261268 - AluJo SINE Alu -16 296 1 2378 106 0 0 chr13 7611912 7612214 -94260955 - AluSx SINE Alu -10 302 1 207 185 19 37 chr13 7612899 7612953 -94260216 + A-rich Low_complexity Low_complexity 4 56 0 1091 196 47 120 chr13 7613113 7613688 -94259481 + MER34B LTR ERV1 1 521 -21 3980 124 38 11 chr13 7613872 7614092 -94259077 - MER39B LTR ERV1 0 653 440 1468 189 0 4 chr13 7614092 7614335 -94258834 - AluJo SINE Alu -70 242 1 2207 114 7 0 chr13 7614342 7614640 -94258529 - AluSc SINE Alu -9 300 1 3980 124 38 11 chr13 7614640 7615046 -94258123 - MER39B LTR ERV1 -218 435 2 849 192 33 33 chr13 7615329 7615511 -94257658 - MER70A LTR ERVL -16 456 275 976 178 31 21 chr13 7615557 7615748 -94257421 - MER70B LTR ERVL -385 193 1 6007 118 16 3 chr13 7616112 7617004 -94256165 - MER4D LTR ERV1 0 903 1 198 256 178 11 chr13 7617054 7617144 -94256025 + L2 LINE L2 3206 3310 -3 896 199 21 31 chr13 7617669 7617860 -94255309 - MER5A DNA MER1_type 0 189 1 2759 19 0 13 chr13 7617890 7618200 -94254969 - AluYa5 SINE Alu -5 306 1 741 202 0 11 chr13 7618205 7618469 -94254700 + CT-rich Low_complexity Low_complexity 1 261 0 1446 155 4 13 chr13 7618482 7618721 -94254448 - AluJo SINE Alu -73 239 3 1150 132 20 0 chr13 7618870 7619067 -94254102 - L1MA4A LINE L1 0 6303 6103 1413 142 18 0 chr13 7620150 7620369 -94252800 - MER44D DNA MER2_type -14 591 314 808 209 14 0 chr13 7620369 7620517 -94252652 - FRAM SINE Alu -26 150 1 1822 189 12 16 chr13 7620518 7620840 -94252329 - MER44D DNA MER2_type -377 328 8 1355 214 16 43 chr13 7621162 7621281 -94251888 + MLT1A1 LTR MaLR 53 174 -191 1719 207 8 40 chr13 7621281 7621658 -94251511 - MLT1A1 LTR MaLR 0 365 1 1355 214 16 43 chr13 7621658 7621860 -94251309 + MLT1A1 LTR MaLR 174 365 0 530 367 96 0 chr13 7622472 7622712 -94250457 - L2 LINE L2 0 3272 3010 375 313 151 20 chr13 7623040 7623771 -94249398 - L2 LINE L2 -731 2583 1758 261 83 0 0 chr13 7624450 7624486 -94248683 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2215 156 85 16 chr13 7624584 7625007 -94248162 - LTR47A LTR ERVL 0 452 1 213 200 21 116 chr13 7625045 7625140 -94248029 - L2 LINE L2 -181 3091 3006 1303 62 0 0 chr13 7626416 7626577 -94246592 + L1PA8 LINE L1 5998 6158 -14 2228 96 3 3 chr13 7626611 7626902 -94246267 + AluSc SINE Alu 1 291 -18 180 200 0 0 chr13 7628440 7628485 -94244684 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1148 129 0 0 chr13 7628512 7628667 -94244502 - AluSq SINE Alu -158 155 1 700 211 45 35 chr13 7628667 7628866 -94244303 - L1M4 LINE L1 -1100 5046 4846 1713 229 98 25 chr13 7631560 7632080 -94241089 + MER74A LTR ERVL 1 558 0 1622 158 44 11 chr13 7632345 7632618 -94240551 + AluJb SINE Alu 11 292 -20 190 286 66 33 chr13 7633673 7633764 -94239405 - MIR SINE MIR -119 143 50 370 250 318 5 chr13 7634310 7634502 -94238667 + MIR SINE MIR 8 259 -3 2101 79 3 38 chr13 7635226 7635541 -94237628 - AluY SINE Alu 0 305 1 1623 172 0 29 chr13 7637453 7637761 -94235408 + AluJo SINE Alu 9 307 -5 194 354 25 0 chr13 7640486 7640565 -94232604 - MIR3 SINE MIR -9 199 119 363 270 40 62 chr13 7640700 7640856 -94232313 - MER97c DNA MER1_type? -3 1087 936 2184 123 3 0 chr13 7640856 7641156 -94232013 + AluSx SINE Alu 1 301 -11 363 270 40 62 chr13 7641156 7641225 -94231944 - MER97c DNA MER1_type? -154 936 867 1216 209 120 9 chr13 7641335 7641684 -94231485 - MER97b DNA MER1_type? -194 859 472 759 176 7 7 chr13 7641685 7641821 -94231348 + AluJo SINE Alu 2 137 -175 491 279 54 44 chr13 7641835 7642039 -94231130 - MER97b DNA MER1_type? -574 479 274 1081 222 79 29 chr13 7642180 7642492 -94230677 + AluJo SINE Alu 14 312 0 395 216 237 0 chr13 7642561 7642658 -94230511 - MER97b DNA MER1_type? -907 146 27 244 233 55 27 chr13 7642684 7642757 -94230412 + MIR SINE MIR 73 147 -115 1498 152 144 0 chr13 7644494 7644750 -94228419 - AluSx SINE Alu -17 295 3 1292 174 20 4 chr13 7644807 7645054 -94228115 + L1MB2 LINE L1 5921 6171 0 236 353 58 13 chr13 7645134 7645290 -94227879 - MIR SINE MIR -44 218 56 198 103 0 0 chr13 7645352 7645381 -94227788 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 263 299 62 0 chr13 7645664 7645761 -94227408 - MIR SINE MIR -9 253 151 1821 151 3 14 chr13 7646236 7646528 -94226641 - AluJb SINE Alu -23 289 1 2067 122 7 7 chr13 7648395 7648690 -94224479 + AluSx SINE Alu 2 296 -16 198 0 0 0 chr13 7648694 7648716 -94224453 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 877 157 8 0 chr13 7649456 7649590 -94223579 - AluJo SINE Alu -175 137 3 2238 114 16 50 chr13 7650242 7650619 -94222550 - THE1B LTR MaLR 0 364 1 189 262 8 71 chr13 7650650 7650776 -94222393 + L2 LINE L2 2905 3022 -250 295 268 143 0 chr13 7651050 7651162 -94222007 + Charlie7 DNA MER1_type 56 183 -2429 1487 154 41 110 chr13 7651205 7651595 -94221574 + MLT1A2 LTR MaLR 1 363 -11 421 278 42 0 chr13 7651602 7651746 -94221423 + Charlie7 DNA MER1_type 254 403 -2209 291 297 79 7 chr13 7651755 7651933 -94221236 - MLT1J LTR MaLR -241 270 43 7411 58 8 38 chr13 7652009 7653718 -94219451 + SVA Other Other 1 1383 -3 713 266 35 31 chr13 7653719 7654008 -94219161 + Charlie7 DNA MER1_type 400 689 -1923 277 174 64 92 chr13 7654002 7654065 -94219104 + Charlie7 DNA MER1_type 2507 2567 -45 * 2182 93 21 3 chr13 7654065 7654355 -94218814 + AluSc SINE Alu 1 295 -14 277 174 64 92 chr13 7654355 7654400 -94218769 + Charlie7 DNA MER1_type 2567 2612 0 2318 101 0 0 chr13 7655260 7655556 -94217613 - AluSq SINE Alu -17 296 1 1183 210 47 5 chr13 7655559 7655855 -94217314 - L1MD3 LINE L1 -15 7967 7481 2021 130 0 13 chr13 7656622 7656921 -94216248 + AluSx SINE Alu 2 296 -16 5712 116 9 33 chr13 7657181 7658075 -94215094 + L1PA14 LINE L1 5144 6012 -149 1978 97 38 56 chr13 7658075 7658363 -94214806 + AluSx SINE Alu 1 283 -29 5712 116 9 33 chr13 7658363 7658510 -94214659 + L1PA14 LINE L1 6012 6161 0 2528 75 0 3 chr13 7658624 7658931 -94214238 - AluY SINE Alu -5 306 1 21 36 0 0 chr13 7659355 7659383 -94213786 + AT_rich Low_complexity Low_complexity 1 28 0 1088 205 31 5 chr13 7659444 7659668 -94213501 + L1MB8 LINE L1 5910 6139 -39 26 64 0 0 chr13 7660576 7660623 -94212546 + AT_rich Low_complexity Low_complexity 1 47 0 2268 123 0 0 chr13 7660799 7661100 -94212069 - AluSx SINE Alu -11 301 1 2153 107 28 0 chr13 7661569 7661858 -94211311 + AluSx SINE Alu 1 297 -15 3349 151 53 67 chr13 7662137 7662839 -94210330 - L1MB7 LINE L1 -60 6124 5433 365 323 0 0 chr13 7663384 7663483 -94209686 + MIR SINE MIR 37 135 -127 26 30 0 0 chr13 7664302 7664335 -94208834 + GC_rich Low_complexity Low_complexity 1 33 0 201 108 0 0 chr13 7664418 7664455 -94208714 + (CCCCCG)n Simple_repeat Simple_repeat 3 39 0 2352 48 10 3 chr13 7665361 7665655 -94207514 + AluY SINE Alu 1 296 -15 841 125 0 8 chr13 7667287 7667407 -94205762 + FLAM_C SINE Alu 1 119 -24 956 79 0 14 chr13 7667408 7667548 -94205621 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 295 243 54 72 chr13 7668294 7668405 -94204764 + L2 LINE L2 3205 3313 0 189 0 0 0 chr13 7668744 7668765 -94204404 + (T)n Simple_repeat Simple_repeat 1 21 0 23 68 0 0 chr13 7669762 7669806 -94203363 + AT_rich Low_complexity Low_complexity 1 44 0 1218 262 85 101 chr13 7670290 7671011 -94202158 + MER21B LTR ERV1 6 714 -149 224 232 36 0 chr13 7671165 7671221 -94201948 + MIR SINE MIR 85 142 -66 451 213 21 0 chr13 7671240 7671334 -94201835 - MER58C DNA MER1_type 0 215 120 309 151 0 0 chr13 7671334 7671387 -94201782 + CT-rich Low_complexity Low_complexity 4 56 0 2160 114 4 0 chr13 7672980 7673294 -94199875 - AluSx SINE Alu 0 315 1 564 309 127 16 chr13 7673372 7673812 -94199357 + L2 LINE L2 2825 3313 0 637 188 8 16 chr13 7674700 7674828 -94198341 + FLAM_A SINE Alu 1 127 -6 369 299 7 28 chr13 7675615 7675759 -94197410 - MIR SINE MIR -41 221 81 1616 114 9 0 chr13 7676111 7676339 -94196830 - MER30 DNA MER1_type 0 230 1 2442 80 0 0 chr13 7678271 7678572 -94194597 - AluSg SINE Alu -9 301 1 427 337 10 15 chr13 7678648 7678847 -94194322 + LTR16B LTR ERVL 258 455 -9 2119 98 4 4 chr13 7679816 7680090 -94193079 + AluSq SINE Alu 29 302 -11 575 148 20 10 chr13 7680106 7680207 -94192962 - AluSg/x SINE Alu -16 293 192 183 208 42 21 chr13 7681190 7681238 -94191931 + L2 LINE L2 3261 3309 -4 474 18 0 0 chr13 7682021 7682076 -94191093 + (TG)n Simple_repeat Simple_repeat 2 56 0 2092 137 0 3 chr13 7682077 7682369 -94190800 - AluSx SINE Alu -21 291 1 5788 101 7 4 chr13 7683135 7684150 -94189019 - L1PA16 LINE L1 -2 6164 5128 219 288 178 8 chr13 7684211 7684329 -94188840 - MIR SINE MIR -70 192 55 2158 105 17 10 chr13 7685417 7685711 -94187458 - AluSq SINE Alu -17 296 1 23 0 0 0 chr13 7686324 7686347 -94186822 + AT_rich Low_complexity Low_complexity 1 23 0 2214 131 3 0 chr13 7686760 7687065 -94186104 + AluSx SINE Alu 1 306 -6 1701 178 11 3 chr13 7687351 7687637 -94185532 - AluJo SINE Alu -24 288 1 269 278 65 65 chr13 7687735 7687904 -94185265 - HAL1 LINE L1 -23 2484 2316 2337 105 0 3 chr13 7687927 7688233 -94184936 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr13 7688447 7688470 -94184699 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 7690526 7690551 -94182618 + (TC)n Simple_repeat Simple_repeat 2 26 0 2130 108 11 14 chr13 7690551 7690838 -94182331 - AluSx SINE Alu -26 286 1 451 259 40 65 chr13 7691490 7691811 -94181358 - HAL1 LINE L1 -1351 1156 844 785 235 108 110 chr13 7692292 7692738 -94180431 + MLT2B2 LTR ERVL 1 445 -19 252 250 44 0 chr13 7693228 7693296 -94179873 + L1ME3A LINE L1 6072 6142 -28 2292 120 0 0 chr13 7694166 7694475 -94178694 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 7694477 7694503 -94178666 + AT_rich Low_complexity Low_complexity 1 26 0 743 151 0 0 chr13 7694514 7694620 -94178549 + U6 snRNA snRNA 2 107 0 837 317 31 54 chr13 7696310 7696909 -94176260 + L2 LINE L2 2711 3302 -11 1225 218 116 32 chr13 7697302 7697646 -94175523 - L1MA6 LINE L1 -4 6296 5924 434 314 118 14 chr13 7698139 7698415 -94174754 + L1ME LINE L1 5298 5600 -570 383 136 30 0 chr13 7698427 7698493 -94174676 + L1MC3 LINE L1 7552 7619 -166 418 272 49 33 chr13 7698503 7698704 -94174465 + L1ME LINE L1 5605 5824 -297 825 267 88 18 chr13 7699153 7699438 -94173731 + MER69 DNA AcHobo 244 548 -1978 1199 216 101 23 chr13 7699448 7699884 -94173285 + MER69 DNA AcHobo 2022 2491 -35 423 0 0 0 chr13 7700385 7700432 -94172737 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 214 46 64 chr13 7701084 7701257 -94171912 - HAL1 LINE L1 -8 2499 2330 21 0 0 0 chr13 7701504 7701525 -94171644 + AT_rich Low_complexity Low_complexity 1 21 0 228 284 12 49 chr13 7701704 7701785 -94171384 - HAL1 LINE L1 -767 1740 1663 401 290 248 29 chr13 7701794 7702101 -94171068 - HAL1 LINE L1 -898 1609 1236 6288 55 46 45 chr13 7702101 7703219 -94169950 - SVA Other Other -551 1380 433 11929 157 51 108 chr13 7703340 7703507 -94169662 - L1 LINE L1 -1162 5166 4991 482 184 69 0 chr13 7703507 7703594 -94169575 - FLAM SINE Alu -12 131 39 11929 157 51 108 chr13 7703594 7704635 -94168534 - L1 LINE L1 -1337 4991 3892 1934 146 24 3 chr13 7704635 7704930 -94168239 + AluSx SINE Alu 1 301 -11 11929 157 51 108 chr13 7704930 7705066 -94168103 - L1 LINE L1 -2436 3892 3750 875 175 18 24 chr13 7705066 7705232 -94167937 - AluJb SINE Alu -13 299 135 11929 157 51 108 chr13 7705232 7707074 -94166095 - L1 LINE L1 -2578 3750 1940 7621 192 20 6 chr13 7707240 7709188 -94163981 - L1 LINE L1 -4065 1263 1 651 160 194 0 chr13 7709277 7709427 -94163742 + MER5A DNA MER1_type 4 187 -2 646 51 0 0 chr13 7710659 7710737 -94162432 - L1PA5 LINE L1 -1 6153 6076 212 373 36 0 chr13 7710743 7710853 -94162316 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1769 105 34 4 chr13 7710866 7711137 -94162032 - L1PA5 LINE L1 -34 6120 5841 1983 146 104 3 chr13 7713242 7713570 -94159599 + MER46B DNA MER2_type 1 236 0 1988 156 3 3 chr13 7714300 7714608 -94158561 - AluJb SINE Alu -4 308 1 203 293 120 23 chr13 7716333 7716466 -94156703 - L2 LINE L2 -26 3246 3101 * 708 235 16 22 chr13 7716403 7716586 -94156583 - MER5A DNA MER1_type -7 182 1 2059 133 13 3 chr13 7717156 7717465 -94155704 + AluJb SINE Alu 1 312 0 297 327 84 40 chr13 7717606 7717758 -94155411 - L2 LINE L2 -194 3078 2909 537 216 251 6 chr13 7717758 7717925 -94155244 + MER3 DNA MER1_type 1 208 -1 297 327 84 40 chr13 7717925 7718023 -94155146 - L2 LINE L2 -363 2909 2817 1909 115 4 18 chr13 7718134 7718412 -94154757 - AluSx SINE Alu -38 274 1 323 320 22 43 chr13 7718863 7719064 -94154105 - MIR SINE MIR -60 202 4 342 308 83 8 chr13 7719310 7719430 -94153739 + MIR SINE MIR 21 149 -113 694 279 25 15 chr13 7719450 7719654 -94153515 - MIR SINE MIR -56 206 1 360 0 0 0 chr13 7721057 7721097 -94152072 + (TG)n Simple_repeat Simple_repeat 2 41 0 1718 138 19 70 chr13 7721097 7721409 -94151760 - AluJo SINE Alu -16 296 1 341 296 179 25 chr13 7721489 7721651 -94151518 - MIR SINE MIR -19 243 57 2172 129 0 10 chr13 7722852 7723161 -94150008 - AluSx SINE Alu -6 306 1 1338 159 0 10 chr13 7723322 7723530 -94149639 + AluJo SINE Alu 86 291 -21 21 36 0 0 chr13 7724909 7724937 -94148232 + AT_rich Low_complexity Low_complexity 1 28 0 222 327 159 0 chr13 7726094 7726207 -94146962 - L2 LINE L2 0 3272 3142 250 333 116 21 chr13 7726490 7726914 -94146255 - L2 LINE L2 -2333 981 518 565 167 11 0 chr13 7727424 7727514 -94145655 + FLAM_A SINE Alu 36 126 -16 2101 135 3 0 chr13 7727626 7727930 -94145239 - AluJb SINE Alu -7 305 1 497 241 103 69 chr13 7728686 7728843 -94144326 - MIR SINE MIR -37 225 56 2220 96 0 0 chr13 7728843 7729170 -94143999 + AluSx SINE Alu 1 327 0 497 241 103 69 chr13 7729170 7729213 -94143956 - MIR SINE MIR -206 56 16 3801 109 13 2 chr13 7729213 7729735 -94143434 + MER1A DNA MER1_type 1 528 -1 2008 144 0 6 chr13 7729937 7730250 -94142919 + AluSx SINE Alu 1 311 -1 2298 97 0 7 chr13 7731173 7731472 -94141697 + AluSg SINE Alu 1 297 -13 561 243 40 40 chr13 7731655 7731828 -94141341 - MLT1D LTR MaLR 0 505 333 628 223 0 136 chr13 7731879 7732018 -94141151 - MLT1D LTR MaLR -315 190 90 2177 107 3 3 chr13 7732018 7732316 -94140853 + AluSx SINE Alu 1 298 -14 628 223 0 136 chr13 7732316 7732396 -94140773 - MLT1D LTR MaLR -415 90 1 2225 217 0 21 chr13 7732975 7733455 -94139714 - L1MB4 LINE L1 -315 5865 5396 619 299 58 58 chr13 7733444 7734016 -94139153 - HAL1 LINE L1 -1653 854 283 * 2255 106 3 0 chr13 7734195 7734487 -94138682 + AluSq SINE Alu 1 293 -20 28 29 0 0 chr13 7735737 7735772 -94137397 + AT_rich Low_complexity Low_complexity 1 35 0 5643 115 20 53 chr13 7735791 7736908 -94136261 - L1PB1 LINE L1 -21 6130 5058 315 0 0 0 chr13 7739493 7739528 -94133641 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr13 7739785 7739810 -94133359 + (TA)n Simple_repeat Simple_repeat 1 25 0 870 133 193 6 chr13 7739832 7739993 -94133176 + MER46B DNA MER2_type 1 67 -169 308 136 0 0 chr13 7739993 7740037 -94133132 + AluSq SINE Alu 1 44 -257 2813 13 3 0 chr13 7741973 7742281 -94130888 - AluYb8 SINE Alu -9 309 1 411 337 10 15 chr13 7742357 7742556 -94130613 + LTR16B LTR ERVL 258 455 -9 1922 98 4 0 chr13 7743525 7743770 -94129399 + AluSq SINE Alu 29 274 -39 1139 153 6 0 chr13 7743873 7744049 -94129120 - AluSq SINE Alu -136 177 1 2421 77 3 0 chr13 7744710 7745010 -94128159 + AluY SINE Alu 1 301 -10 612 321 15 19 chr13 7745321 7745583 -94127586 + L1ME3 LINE L1 36 296 -6100 * 799 262 70 23 chr13 7745577 7745921 -94127248 + L1ME3 LINE L1 1022 1381 -5015 630 169 0 0 chr13 7745941 7746030 -94127139 + AluJ/FLAM SINE Alu 2 90 -222 2467 46 0 0 chr13 7746032 7746312 -94126857 + AluY SINE Alu 1 280 -31 198 0 0 0 chr13 7746312 7746334 -94126835 + (CA)n Simple_repeat Simple_repeat 1 22 0 5492 78 10 3 chr13 7746337 7747039 -94126130 + L1PA13 LINE L1 5454 6160 -3 1901 236 142 12 chr13 7747040 7747793 -94125376 + L1ME3 LINE L1 2437 3287 -2928 268 293 57 32 chr13 7747839 7747898 -94125271 + L1ME LINE L1 5704 5760 -361 2118 116 0 47 chr13 7747898 7748217 -94124952 + AluSx SINE Alu 1 304 -8 268 293 57 32 chr13 7748217 7748314 -94124855 + L1ME LINE L1 5760 5864 -257 1526 108 21 21 chr13 7748571 7748673 -94124496 + L1MA4 LINE L1 6060 6161 -139 2706 199 107 60 chr13 7748673 7749462 -94123707 + LTR1B LTR ERV1 1 826 0 1526 108 21 21 chr13 7749462 7749600 -94123569 + L1MA4 LINE L1 6160 6300 0 828 212 0 0 chr13 7749843 7750016 -94123153 + AluJb SINE Alu 137 309 0 198 297 208 0 chr13 7750854 7750955 -94122214 - MIR SINE MIR -82 180 59 2225 217 134 46 chr13 7751635 7751925 -94121244 + L1ME3 LINE L1 5148 5411 -820 1978 127 29 0 chr13 7751925 7752224 -94120945 + AluSx SINE Alu 1 307 0 2225 217 134 46 chr13 7752224 7752904 -94120265 + L1ME3 LINE L1 5411 6201 -30 696 238 15 40 chr13 7752988 7753190 -94119979 - L2 LINE L2 0 3313 3117 4503 144 64 53 chr13 7753737 7754164 -94119005 + L1MB3 LINE L1 5072 5493 -690 1538 174 28 21 chr13 7754164 7754451 -94118718 + AluJo SINE Alu 16 304 -8 4503 144 64 53 chr13 7754451 7755129 -94118040 + L1MB3 LINE L1 5493 6181 -2 1669 164 34 20 chr13 7756942 7757234 -94115935 - AluJo SINE Alu -16 296 1 205 26 53 26 chr13 7758159 7758197 -94114972 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 1814 154 17 7 chr13 7758202 7758500 -94114669 - AluJo SINE Alu -10 302 2 5774 116 18 13 chr13 7759598 7759786 -94113383 + L1PA16 LINE L1 5303 5489 -677 1999 146 7 3 chr13 7759786 7760081 -94113088 + AluJb SINE Alu 1 296 -16 5774 116 18 13 chr13 7760081 7760743 -94112426 + L1PA16 LINE L1 5489 6157 -9 662 44 0 11 chr13 7760858 7760949 -94112220 + (CA)n Simple_repeat Simple_repeat 2 91 0 2420 71 10 0 chr13 7761443 7761739 -94111430 + AluSq SINE Alu 1 299 -14 2048 139 0 16 chr13 7762213 7762530 -94110639 + AluSx SINE Alu 1 312 0 2411 170 42 2 chr13 7762737 7763166 -94110003 - L1PB4 LINE L1 -1 6155 5710 1930 149 0 3 chr13 7763300 7763601 -94109568 + AluJo SINE Alu 13 312 0 1872 186 20 23 chr13 7764686 7765078 -94108091 + L1MB7 LINE L1 5727 6117 -67 2318 91 7 3 chr13 7765414 7765721 -94107448 + AluSp SINE Alu 1 308 -5 285 98 0 0 chr13 7765826 7765867 -94107302 + (TG)n Simple_repeat Simple_repeat 2 42 0 2150 117 17 0 chr13 7765965 7766264 -94106905 + AluSx SINE Alu 1 304 -8 270 272 126 46 chr13 7766335 7766574 -94106595 + L2 LINE L2 1825 2082 -1232 232 290 14 0 chr13 7766665 7766734 -94106435 + L2 LINE L2 2251 2320 -994 2155 121 0 9 chr13 7767462 7767777 -94105392 - AluSq SINE Alu -1 312 1 187 292 70 128 chr13 7768215 7768472 -94104697 + L2 LINE L2 2985 3226 -46 23 33 0 0 chr13 7768634 7768664 -94104505 + AT_rich Low_complexity Low_complexity 1 30 0 1738 155 50 0 chr13 7768669 7768947 -94104222 - AluJb SINE Alu -20 292 1 2176 125 0 0 chr13 7768954 7769249 -94103920 - AluSc SINE Alu -14 295 1 234 180 20 0 chr13 7769260 7769310 -94103859 - L1MC2 LINE L1 -24 6320 6270 3133 98 71 11 chr13 7769311 7769762 -94103407 - MER1A DNA MER1_type -1 528 51 1671 174 25 41 chr13 7769783 7769888 -94103281 - L1MC2 LINE L1 -71 6273 6168 204 40 0 0 chr13 7769888 7769913 -94103256 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1998 134 0 11 chr13 7769918 7770202 -94102967 - AluSx SINE Alu -31 281 1 1671 174 25 41 chr13 7770202 7770352 -94102817 - L1MC2 LINE L1 -180 6164 6017 2352 156 65 12 chr13 7770352 7770755 -94102414 + MSTB LTR MaLR 3 426 0 1671 174 25 41 chr13 7770755 7770855 -94102314 - L1MC2 LINE L1 -327 6017 5917 1144 141 5 44 chr13 7770836 7770987 -94102182 + L1MC1 LINE L1 5741 5883 -450 * 2432 76 0 7 chr13 7770987 7771291 -94101878 + AluY SINE Alu 1 302 -9 1144 141 5 44 chr13 7771291 7771345 -94101824 + L1MC1 LINE L1 5883 5938 -395 239 27 0 0 chr13 7771364 7771401 -94101768 + Alu SINE Alu 265 301 -1 395 148 0 0 chr13 7771406 7771467 -94101702 + L1MC1 LINE L1 5878 5938 -395 2191 131 0 0 chr13 7771890 7772188 -94100981 - AluSq SINE Alu -15 298 1 408 284 129 40 chr13 7773116 7773657 -94099512 + L1MC4a LINE L1 5348 5575 -599 2750 137 11 18 chr13 7773804 7774250 -94098919 + MER65A LTR ERV1 2 444 -1 1701 186 3 0 chr13 7775230 7775520 -94097649 + AluJo SINE Alu 1 291 -21 955 114 0 0 chr13 7776149 7776280 -94096889 - L1PA10 LINE L1 -10 6158 6028 650 189 57 39 chr13 7777368 7777550 -94095619 + MER39 LTR ERV1 399 565 0 201 175 0 0 chr13 7777774 7777814 -94095355 + (CA)n Simple_repeat Simple_repeat 1 40 0 1248 216 164 19 chr13 7778032 7778403 -94094766 + LTR37A LTR ERV1 2 426 0 185 229 66 33 chr13 7779052 7779113 -94094056 - L2 LINE L2 -10 3262 3200 308 217 283 9 chr13 7779145 7779251 -94093918 + MER5A DNA MER1_type 55 189 0 204 314 81 24 chr13 7779386 7779510 -94093659 - MIR3 SINE MIR -30 178 48 890 286 179 29 chr13 7780624 7780736 -94092433 - L2 LINE L2 -71 3242 3148 1671 196 7 0 chr13 7780736 7781027 -94092142 + AluJo SINE Alu 1 293 -19 890 286 179 29 chr13 7781027 7781626 -94091543 - L2 LINE L2 -165 3148 2420 2317 105 0 3 chr13 7782372 7782677 -94090492 + AluSx SINE Alu 1 304 -8 277 297 188 7 chr13 7782706 7782844 -94090325 + MIR3 SINE MIR 36 198 -10 2043 114 0 0 chr13 7783314 7783595 -94089574 + AluSq SINE Alu 33 313 0 2140 100 14 17 chr13 7783747 7784038 -94089131 + AluSx SINE Alu 1 290 -22 186 167 0 0 chr13 7785134 7785170 -94087999 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 260 370 40 76 chr13 7786345 7786594 -94086575 - L2 LINE L2 -32 3240 3001 203 0 37 0 chr13 7786748 7786775 -94086394 + (TA)n Simple_repeat Simple_repeat 1 28 0 532 280 29 51 chr13 7786780 7786946 -94086223 + L1ME LINE L1 4036 4195 -1951 2273 108 7 0 chr13 7786946 7787242 -94085927 - AluSp SINE Alu -15 298 1 532 280 29 51 chr13 7787242 7787350 -94085819 + L1ME LINE L1 4195 4304 -1842 287 141 16 0 chr13 7787365 7787429 -94085740 + T-rich Low_complexity Low_complexity 1 65 0 15349 48 2 2 chr13 7787429 7789992 -94083177 - L1PA5 LINE L1 -2 6152 3588 610 196 22 14 chr13 7789993 7790131 -94083038 + MER4C LTR ERV1 327 465 0 403 246 95 83 chr13 7790167 7790484 -94082685 + L1ME LINE L1 4628 4952 -1194 2056 119 3 0 chr13 7790484 7790812 -94082357 + AluSq SINE Alu 1 329 0 403 246 95 83 chr13 7790812 7790842 -94082327 + L1ME LINE L1 4952 4980 -1166 530 280 75 19 chr13 7790977 7791304 -94081865 + L1ME LINE L1 5052 5414 -750 2005 188 89 32 chr13 7791304 7791766 -94081403 - LTR2B LTR ERV1 0 490 3 530 280 75 19 chr13 7791766 7791915 -94081254 + L1ME LINE L1 5414 5553 -611 514 262 40 0 chr13 7791965 7792114 -94081055 + MER112 DNA MER1_type 2 156 -104 2140 128 0 0 chr13 7792540 7792838 -94080331 + AluSq SINE Alu 2 299 -14 580 196 0 0 chr13 7792838 7792945 -94080224 + MER3 DNA MER1_type 103 209 0 231 270 16 0 chr13 7792902 7792965 -94080204 - MER3 DNA MER1_type -119 90 27 * 802 271 223 42 chr13 7792965 7793318 -94079851 + L2 LINE L2 822 1110 -2204 2516 56 7 13 chr13 7793318 7793623 -94079546 + AluY SINE Alu 1 303 -8 802 271 223 42 chr13 7793623 7793871 -94079298 + L2 LINE L2 1110 1532 -1782 388 269 81 36 chr13 7793872 7793892 -94079277 - L1ME LINE L1 -4153 1927 1909 2391 90 7 0 chr13 7793892 7794193 -94078976 - AluSx SINE Alu -9 303 1 388 269 81 36 chr13 7794193 7795035 -94078134 - L1ME LINE L1 -4171 1909 988 23 0 0 0 chr13 7795416 7795439 -94077730 + AT_rich Low_complexity Low_complexity 1 23 0 978 268 111 35 chr13 7795580 7795686 -94077483 - L1ME LINE L1 -5056 1014 917 195 0 39 0 chr13 7795686 7795712 -94077457 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2190 92 3 0 chr13 7795712 7795995 -94077174 - AluSq SINE Alu -1 309 1 978 268 111 35 chr13 7795995 7796504 -94076665 - L1ME LINE L1 -5152 918 348 1717 176 3 22 chr13 7796591 7796909 -94076260 - AluJb SINE Alu 0 312 1 248 229 0 0 chr13 7796999 7797069 -94076100 + A-rich Low_complexity Low_complexity 1 70 0 378 284 57 7 chr13 7797070 7797211 -94075958 - L1ME LINE L1 -5879 191 44 1270 259 143 18 chr13 7797357 7797832 -94075337 + L2 LINE L2 2045 2598 -716 3131 161 9 33 chr13 7797832 7797958 -94075211 + MER41D LTR ERV1 1 129 -428 2353 103 0 0 chr13 7797958 7798258 -94074911 + AluSx SINE Alu 1 300 -12 3131 161 9 33 chr13 7798258 7798702 -94074467 + MER41D LTR ERV1 129 557 0 1270 259 143 18 chr13 7798702 7798770 -94074399 + L2 LINE L2 2598 2656 -658 676 293 64 69 chr13 7798838 7799336 -94073833 + L2 LINE L2 2621 3216 -97 2050 149 0 0 chr13 7799336 7799644 -94073525 - AluJb SINE Alu -4 308 1 676 293 64 69 chr13 7799644 7799742 -94073427 + L2 LINE L2 3216 3313 0 2826 164 68 83 chr13 7799781 7800202 -94072967 + L1MB7 LINE L1 5360 5786 -398 2042 136 3 3 chr13 7800202 7800510 -94072659 + AluSx SINE Alu 4 311 -1 2826 164 68 83 chr13 7800510 7800778 -94072391 + L1MB7 LINE L1 5786 6056 -128 1654 161 20 24 chr13 7800778 7801070 -94072099 + AluJo SINE Alu 1 291 -21 1588 132 8 0 chr13 7801070 7801305 -94071864 - AluSx SINE Alu -19 293 57 2826 164 68 83 chr13 7801305 7801445 -94071724 + L1MB7 LINE L1 6054 6179 -5 657 289 92 9 chr13 7801904 7802122 -94071047 - MIR SINE MIR -1 261 26 924 231 89 0 chr13 7802799 7802858 -94070311 - Charlie5 DNA MER1_type 0 2624 2572 676 207 8 8 chr13 7802858 7802979 -94070190 + FLAM_A SINE Alu 1 121 -12 924 231 89 0 chr13 7802979 7803278 -94069891 - Charlie5 DNA MER1_type -52 2572 2234 330 188 257 0 chr13 7803275 7803376 -94069793 - Charlie5 DNA MER1_type -2485 127 1 * 390 219 85 37 chr13 7803708 7803872 -94069297 + L1MEd LINE L1 2 173 -5946 542 226 161 5 chr13 7803987 7804186 -94068983 + MLT1J LTR MaLR 36 265 -246 1596 110 200 0 chr13 7804191 7804491 -94068678 + MER46B DNA MER2_type 1 235 -1 2459 87 3 0 chr13 7804685 7804994 -94068175 - AluSp SINE Alu -3 310 1 606 246 104 38 chr13 7805049 7805260 -94067909 + MIR SINE MIR 17 241 -21 543 322 94 5 chr13 7806166 7806368 -94066801 + MIR SINE MIR 31 250 -12 359 251 204 42 chr13 7807004 7807171 -94065998 - MIR SINE MIR -21 241 48 245 182 18 0 chr13 7807396 7807451 -94065718 + L1ME LINE L1 5527 5582 -539 219 69 0 0 chr13 7807560 7807589 -94065580 + (TG)n Simple_repeat Simple_repeat 1 29 0 342 67 0 0 chr13 7807591 7807636 -94065533 + (TA)n Simple_repeat Simple_repeat 1 45 0 335 87 48 164 chr13 7807637 7807676 -94065493 + L1PB1 LINE L1 5795 5837 -314 1801 117 59 38 chr13 7807676 7807966 -94065203 + AluSq SINE Alu 1 296 -17 335 87 48 164 chr13 7807966 7808030 -94065139 + L1PB1 LINE L1 5837 5886 -265 618 13 0 0 chr13 7808030 7808105 -94065064 + L1PA3 LINE L1 6077 6151 -4 32 0 0 23 chr13 7808105 7808133 -94065036 + AT_rich Low_complexity Low_complexity 1 29 -13 1742 101 22 14 chr13 7808133 7808409 -94064760 + L1PB1 LINE L1 5874 6151 0 32 0 0 23 chr13 7808409 7808423 -94064746 + AT_rich Low_complexity Low_complexity 29 42 0 2362 83 13 0 chr13 7810490 7810792 -94062377 - AluSq SINE Alu -6 307 2 362 279 99 87 chr13 7864122 7864444 -94008725 - L1M4 LINE L1 -1826 4320 3995 1055 268 104 30 chr13 7864470 7864917 -94008252 - L1M4 LINE L1 -2218 3928 3411 2261 103 7 0 chr13 7864917 7865207 -94007962 + AluSc SINE Alu 1 292 -17 1055 268 104 30 chr13 7865207 7865449 -94007720 - L1M4 LINE L1 -2735 3411 3188 303 316 95 57 chr13 7865996 7866259 -94006910 - L1M4 LINE L1 -1186 4960 4688 860 132 26 0 chr13 7866840 7866978 -94006191 - L1P LINE L1 -1118 5028 4884 2850 100 15 8 chr13 7866978 7867379 -94005790 + L1PA13 LINE L1 5760 6163 0 860 132 26 0 chr13 7867379 7867392 -94005777 - L1P LINE L1 -1262 4884 4873 1830 167 7 10 chr13 7867956 7868261 -94004908 - AluJb SINE Alu -8 304 1 2287 111 7 0 chr13 7868906 7869213 -94003956 - AluSx SINE Alu -3 309 1 368 287 144 11 chr13 7869797 7869978 -94003191 + MIR SINE MIR 39 243 -19 2291 105 10 0 chr13 7870032 7870327 -94002842 - AluSx SINE Alu -14 298 1 764 77 0 0 chr13 7870420 7870511 -94002658 + AluSg/x SINE Alu 208 298 -14 2289 129 0 0 chr13 7870525 7870836 -94002333 + AluSx SINE Alu 1 311 -1 687 239 101 0 chr13 7871139 7871327 -94001842 - MER102a DNA MER1_type 0 330 124 1134 227 61 64 chr13 7872025 7872110 -94001059 + MER90 LTR ERV1 238 322 -292 2333 91 0 3 chr13 7872110 7872408 -94000761 + AluSq SINE Alu 1 297 -16 1134 227 61 64 chr13 7872408 7872697 -94000472 + MER90 LTR ERV1 322 611 -3 953 271 8 4 chr13 7875730 7875970 -93997199 + MIR SINE MIR 1 241 -21 348 296 24 48 chr13 7876836 7876961 -93996208 - MIR SINE MIR -117 145 24 1508 127 0 0 chr13 7877681 7877894 -93995275 + AluJb SINE Alu 1 213 -99 821 153 8 15 chr13 7879069 7879200 -93993969 + FLAM_A SINE Alu 4 133 0 767 146 0 41 chr13 7879481 7879604 -93993565 - FLAM_A SINE Alu -13 120 3 221 163 75 0 chr13 7879628 7879708 -93993461 + (TA)n Simple_repeat Simple_repeat 1 86 0 1914 118 3 88 chr13 7879955 7880294 -93992875 - AluSx SINE Alu -2 310 1 4477 239 48 62 chr13 7880711 7880743 -93992426 - L1M4c LINE L1 -4186 2639 2608 1538 142 62 31 chr13 7880743 7880990 -93992179 - L1MB5 LINE L1 -8 6166 5907 2477 186 13 45 chr13 7880990 7881462 -93991707 + MSTB2 LTR MaLR 1 457 0 1538 142 62 31 chr13 7881462 7881503 -93991666 - L1MB5 LINE L1 -267 5907 5869 4477 239 48 62 chr13 7881503 7883982 -93989187 - L1M4c LINE L1 -4217 2608 14 9499 52 1 0 chr13 7884760 7885830 -93987339 + MER11C LTR ERVK 1 1071 0 297 320 20 0 chr13 7886505 7886605 -93986564 - L3 LINE CR1 -249 1328 1227 642 153 46 8 chr13 7889696 7889827 -93983342 + L1MA4A LINE L1 6168 6303 0 27 0 0 0 chr13 7890431 7890458 -93982711 + AT_rich Low_complexity Low_complexity 1 27 0 831 211 139 0 chr13 7890908 7891088 -93982081 - MER3 DNA MER1_type -4 205 1 421 222 159 8 chr13 7892441 7892567 -93980602 + MIR3 SINE MIR 4 148 -60 184 382 80 43 chr13 7892686 7893196 -93979973 - L2 LINE L2 -661 2653 2125 216 220 169 0 chr13 7893518 7893577 -93979592 - L2 LINE L2 -2066 1248 1180 1425 226 108 39 chr13 7893860 7894294 -93978875 + MLT1C LTR MaLR 3 466 -1 668 265 113 95 chr13 7899084 7899974 -93973195 - L2 LINE L2 0 3313 2318 379 252 72 9 chr13 7900290 7900401 -93972768 - MER102a DNA MER1_type -136 194 77 289 286 50 21 chr13 7900588 7900728 -93972441 + L2 LINE L2 3106 3249 -64 2491 258 22 41 chr13 7904313 7905125 -93968044 + L1ME1 LINE L1 5373 6334 0 412 259 27 34 chr13 7906636 7906783 -93966386 + Tigger8 DNA MER2_type 430 575 -91 192 40 0 0 chr13 7907418 7907443 -93965726 + (TC)n Simple_repeat Simple_repeat 2 26 0 843 186 84 0 chr13 7907449 7907616 -93965553 - AluY SINE Alu -3 308 128 1337 144 4 48 chr13 7907619 7907848 -93965321 - AluSg/x SINE Alu -11 301 83 1360 180 62 42 chr13 7908444 7908733 -93964436 - AluJo SINE Alu -17 295 1 12051 118 43 9 chr13 7908804 7910646 -93962523 - Tigger1 DNA MER2_type 0 2418 514 1675 158 0 4 chr13 7910663 7910929 -93962240 - Tigger1 DNA MER2_type -2153 265 1 2099 121 0 3 chr13 7911023 7911335 -93961834 - AluSx SINE Alu 0 311 1 643 326 49 0 chr13 7911386 7911610 -93961559 - MIR SINE MIR -14 248 14 1638 149 19 55 chr13 7911979 7912288 -93960881 - AluJb SINE Alu -14 298 1 3792 180 100 9 chr13 7914008 7914990 -93958179 - L1MB8 LINE L1 -6 6172 5092 396 0 0 0 chr13 7915478 7915522 -93957647 + (CA)n Simple_repeat Simple_repeat 2 45 0 2323 113 0 0 chr13 7916823 7917132 -93956037 - AluSc SINE Alu 0 309 1 2578 173 86 29 chr13 7917154 7917703 -93955466 + L1MB5 LINE L1 5587 6166 -8 287 300 15 62 chr13 7917883 7918013 -93955156 + MER5B DNA MER1_type 49 172 -6 1714 149 27 27 chr13 7918092 7918388 -93954781 - AluJo SINE Alu -14 298 3 204 317 65 65 chr13 7918526 7918649 -93954520 - MIR SINE MIR -122 140 18 460 233 54 0 chr13 7919401 7919530 -93953639 - L1ME4a LINE L1 0 6121 5986 210 91 0 0 chr13 7922858 7922891 -93950278 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr13 7923860 7923889 -93949280 + AT_rich Low_complexity Low_complexity 1 29 0 1885 165 9 6 chr13 7923890 7924217 -93948952 - L1MA4 LINE L1 -10 6290 5963 215 317 39 39 chr13 7924625 7924729 -93948440 - MIR SINE MIR -47 215 112 2068 114 3 3 chr13 7924762 7925059 -93948110 - AluSx SINE Alu -15 297 1 813 185 0 22 chr13 7925182 7925317 -93947852 + FLAM_C SINE Alu 1 132 -1 396 103 0 0 chr13 7927870 7927928 -93945241 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 913 286 145 31 chr13 7927980 7928393 -93944776 + L2 LINE L2 2854 3313 0 333 303 62 28 chr13 7928928 7929073 -93944096 - L2 LINE L2 -458 2856 2707 4185 177 57 37 chr13 7929074 7930356 -93942813 - L1MB7 LINE L1 0 6184 4870 497 276 8 16 chr13 7930440 7930563 -93942606 - L2 LINE L2 -8 3305 3184 270 262 29 141 chr13 7931098 7931304 -93941865 - MIR SINE MIR -17 245 63 509 80 13 0 chr13 7933182 7933257 -93939912 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2423 77 17 0 chr13 7933916 7934216 -93938953 - AluY SINE Alu -6 305 1 1096 188 99 5 chr13 7934716 7934876 -93938293 - AluJo SINE Alu -8 304 116 189 0 0 0 chr13 7934876 7934897 -93938272 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1096 188 99 5 chr13 7934897 7934959 -93938210 - AluJo SINE Alu -196 116 61 628 221 19 6 chr13 7934967 7935125 -93938044 - L1MB7 LINE L1 0 6184 6025 811 173 71 0 chr13 7935125 7935293 -93937876 - L1 LINE L1 -1006 5140 4961 2829 176 8 51 chr13 7935363 7935949 -93937220 - L1MB7 LINE L1 -192 5992 5432 853 300 88 11 chr13 7936670 7937126 -93936043 - L1ME3A LINE L1 -244 5926 5436 292 312 21 7 chr13 7937157 7937298 -93935871 - L1ME3A LINE L1 -3746 2400 2258 1422 181 63 52 chr13 7937566 7937969 -93935200 + MLT1E3 LTR MaLR 140 624 0 218 320 13 13 chr13 7938714 7938792 -93934377 - L2 LINE L2 -33 3239 3162 200 261 0 0 chr13 7939706 7939752 -93933417 - MIR SINE MIR -119 143 98 1042 190 59 69 chr13 7940103 7940541 -93932628 - MLT1D LTR MaLR -2 503 1 323 286 60 30 chr13 7941967 7942100 -93931069 + MIR SINE MIR 12 148 -114 180 200 0 0 chr13 7942788 7942828 -93930341 + CT-rich Low_complexity Low_complexity 1 40 0 195 302 175 24 chr13 7943141 7943267 -93929902 - MIR SINE MIR -35 227 83 266 230 95 0 chr13 7943657 7943731 -93929438 + MER103 DNA DNA 74 154 -12 1769 169 3 7 chr13 7943763 7944065 -93929104 + AluJb SINE Alu 1 301 -11 1416 192 8 4 chr13 7944547 7944808 -93928361 + AluJb SINE Alu 1 262 -50 609 193 12 28 chr13 7944809 7945062 -93928107 + GA-rich Low_complexity Low_complexity 1 249 0 358 204 20 10 chr13 7945073 7945171 -93927998 + GA-rich Low_complexity Low_complexity 4 102 0 470 285 43 38 chr13 7947620 7947806 -93925363 - L3b LINE CR1 -180 1403 1217 214 296 0 19 chr13 7947866 7947920 -93925249 + L2 LINE L2 3219 3271 -1 344 349 66 0 chr13 7948244 7948396 -93924773 - L2 LINE L2 -10 3262 3101 2282 121 0 0 chr13 7948396 7948693 -93924476 - AluSq SINE Alu -16 297 1 1929 160 0 3 chr13 7949015 7949309 -93923860 - AluJb SINE Alu -13 299 7 3624 139 43 3 chr13 7949418 7949995 -93923174 + MER7C DNA MER2_type 2 601 -1 857 230 72 5 chr13 7950312 7950521 -93922648 - MER58A DNA MER1_type -1 223 1 1046 158 18 0 chr13 7951254 7951425 -93921744 - AluJb SINE Alu -12 300 127 2429 83 0 6 chr13 7951425 7951738 -93921431 - AluY SINE Alu 0 311 1 2538 78 0 0 chr13 7953782 7954090 -93919079 + AluY SINE Alu 1 308 -3 1579 180 37 27 chr13 7955136 7955431 -93917738 - AluJo SINE Alu -14 298 1 2089 142 51 3 chr13 7955741 7956073 -93917096 - MER7A DNA MER2_type 0 346 1 210 37 0 0 chr13 7956410 7956437 -93916732 + (TC)n Simple_repeat Simple_repeat 2 28 0 2148 154 61 50 chr13 7956730 7957192 -93915977 + MLT1C LTR MaLR 1 467 0 2242 72 0 31 chr13 7958680 7959002 -93914167 - AluSx SINE Alu 0 313 1 191 261 130 22 chr13 7961444 7961536 -93911633 - MIR SINE MIR -52 210 109 691 196 8 8 chr13 7963635 7963791 -93909378 + FLAM_A SINE Alu 1 133 0 1573 125 52 66 chr13 7965190 7965478 -93907691 - AluJo SINE Alu -3 309 26 234 244 119 62 chr13 7965554 7965747 -93907422 - L1ME4a LINE L1 -60 6061 5858 341 141 0 94 chr13 7965747 7965811 -93907358 + AluJ/FLAM SINE Alu 1 58 -244 2037 131 24 0 chr13 7965933 7966224 -93906945 + AluSx SINE Alu 1 298 -14 610 117 0 29 chr13 7966364 7966467 -93906702 - FRAM SINE Alu -7 169 70 29 0 0 0 chr13 7968439 7968468 -93904701 + AT_rich Low_complexity Low_complexity 1 29 0 2022 130 0 10 chr13 7969379 7969671 -93903498 + AluSg SINE Alu 1 289 -21 429 145 0 0 chr13 7970079 7970155 -93903014 - AluJ/FRAM SINE Alu -10 302 227 586 301 12 45 chr13 7970282 7970528 -93902641 + MIR SINE MIR 3 240 -22 198 0 0 0 chr13 7971258 7971280 -93901889 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 202 12 0 chr13 7972729 7972813 -93900356 + GA-rich Low_complexity Low_complexity 2 86 0 696 197 0 0 chr13 7975251 7975373 -93897796 + FLAM_A SINE Alu 1 122 -11 278 173 58 19 chr13 7975374 7975478 -93897691 + (TA)n Simple_repeat Simple_repeat 1 108 0 2254 123 0 22 chr13 7975734 7976051 -93897118 + AluSx SINE Alu 1 310 -2 464 230 164 7 chr13 7978276 7978428 -93894741 + MER5A DNA MER1_type 14 189 0 1890 229 65 49 chr13 7979975 7980526 -93892643 - MER119 DNA MER1_type -21 562 3 223 356 85 5 chr13 7980955 7981143 -93892026 + L3 LINE CR1 849 1051 -526 361 282 41 47 chr13 7981180 7981350 -93891819 + L3 LINE CR1 1156 1324 -253 5218 73 30 6 chr13 7983751 7984426 -93888743 + LTR8 LTR ERV1 1 691 0 258 106 0 0 chr13 7986482 7986529 -93886640 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2032 109 0 21 chr13 7986529 7986814 -93886355 - AluSq SINE Alu -34 279 1 228 244 0 0 chr13 7987444 7987534 -93885635 + (TG)n Simple_repeat Simple_repeat 2 91 0 197 247 10 0 chr13 7987569 7987666 -93885503 + (TG)n Simple_repeat Simple_repeat 2 99 0 3274 100 15 0 chr13 7987872 7988333 -93884836 + L1PA10 LINE L1 5701 6168 0 291 377 62 0 chr13 7989782 7989928 -93883241 + MER91A DNA MER1_type 17 171 -25 322 220 14 113 chr13 7992722 7992863 -93880306 + L1MB3 LINE L1 6050 6176 -7 1680 186 46 15 chr13 7994365 7994692 -93878477 - MER1B DNA MER1_type 0 337 1 2329 53 0 28 chr13 7994749 7995033 -93878136 + AluY SINE Alu 16 291 -20 1999 141 3 20 chr13 7995242 7995548 -93877621 - AluSx SINE Alu -11 301 1 1202 187 72 75 chr13 7996268 7996484 -93876685 + MER2 DNA MER2_type 1 218 -127 2139 101 3 3 chr13 7996484 7996795 -93876374 - AluSq SINE Alu 0 311 1 1202 187 72 75 chr13 7996795 7996898 -93876271 + MER2 DNA MER2_type 218 320 -25 189 206 48 16 chr13 7997393 7997456 -93875713 - L2 LINE L2 -251 3021 2957 2298 93 3 0 chr13 7998516 7998806 -93874363 - AluSg SINE Alu -8 302 12 1809 110 0 4 chr13 7998871 7999107 -93874062 + AluSx SINE Alu 1 235 -77 25 0 0 0 chr13 7999122 7999147 -93874022 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 8000432 8000455 -93872714 + AT_rich Low_complexity Low_complexity 1 23 0 1452 223 35 77 chr13 8000455 8000509 -93872660 - L1ME1 LINE L1 -10 6156 6101 2048 101 3 82 chr13 8000509 8000837 -93872332 - AluSq SINE Alu -11 302 1 1452 223 35 77 chr13 8000837 8001325 -93871844 - L1ME1 LINE L1 -65 6101 5637 366 326 62 13 chr13 8001804 8002028 -93871141 + MIR SINE MIR 8 242 -20 347 327 65 6 chr13 8002133 8002301 -93870868 - MIR SINE MIR -51 211 34 5923 132 21 7 chr13 8003125 8004164 -93869005 + L1PA13 LINE L1 4270 5347 -816 1892 148 22 29 chr13 8004164 8004475 -93868694 + AluJb SINE Alu 1 309 -3 5923 132 21 7 chr13 8004475 8005283 -93867886 + L1PA13 LINE L1 5347 6142 -21 411 21 0 0 chr13 8005283 8005331 -93867838 + (CA)n Simple_repeat Simple_repeat 2 49 0 1484 160 65 44 chr13 8006385 8006678 -93866491 + AluJo SINE Alu 3 301 -11 455 172 16 16 chr13 8006691 8006813 -93866356 + GA-rich Low_complexity Low_complexity 3 124 0 284 304 8 32 chr13 8007261 8007386 -93865783 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 1248 227 50 59 chr13 8007989 8008447 -93864722 + L1ME1 LINE L1 5704 6157 -9 360 0 0 0 chr13 8008575 8008615 -93864554 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 111 3 7 chr13 8009706 8010003 -93863166 - AluSx SINE Alu -16 296 1 1350 105 51 43 chr13 8010643 8010740 -93862429 + L1MA3 LINE L1 6047 6142 -163 2321 101 0 0 chr13 8010740 8011037 -93862132 + AluSq SINE Alu 1 297 -16 1350 105 51 43 chr13 8011037 8011196 -93861973 + L1MA3 LINE L1 6142 6305 0 35 0 0 0 chr13 8011196 8011231 -93861938 + AT_rich Low_complexity Low_complexity 1 35 0 490 94 47 24 chr13 8012561 8012646 -93860523 - MER34 LTR ERV1 0 542 456 810 84 0 9 chr13 8012650 8012757 -93860412 + FLAM_A SINE Alu 24 129 -13 2159 183 27 5 chr13 8012757 8013199 -93859970 - MER34 LTR ERV1 -64 478 27 585 258 91 45 chr13 8013753 8013974 -93859195 - MIR SINE MIR 0 262 32 195 283 43 0 chr13 8015252 8015298 -93857871 + L2 LINE L2 363 410 -2904 2828 82 0 11 chr13 8015471 8015850 -93857319 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr13 8017217 8017253 -93855916 + AT_rich Low_complexity Low_complexity 1 36 0 1860 167 0 26 chr13 8018981 8019286 -93853883 + AluJb SINE Alu 1 297 -15 1852 142 87 3 chr13 8019877 8020344 -93852825 - LTR31 LTR ERV1 -60 559 1 2406 189 17 14 chr13 8020382 8021306 -93851863 - L1M4 LINE L1 -477 5707 4786 1630 164 26 56 chr13 8021888 8022071 -93851098 - AluJo SINE Alu -16 296 124 2279 114 0 0 chr13 8022071 8022368 -93850801 + AluSx SINE Alu 1 297 -15 1630 164 26 56 chr13 8022368 8022489 -93850680 - AluJo SINE Alu -188 124 1 978 164 26 11 chr13 8022904 8023093 -93850076 + L1PA16 LINE L1 5959 6150 -16 291 208 0 52 chr13 8023148 8023225 -93849944 + L2 LINE L2 2330 2402 -912 184 294 56 86 chr13 8023256 8023453 -93849716 + L2 LINE L2 2826 3016 -256 414 263 26 51 chr13 8023461 8023617 -93849552 + L2 LINE L2 3160 3311 -2 26 30 0 0 chr13 8024329 8024362 -93848807 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 8025127 8025164 -93848005 + AT_rich Low_complexity Low_complexity 1 37 0 1702 180 3 37 chr13 8025323 8025623 -93847546 + AluJb SINE Alu 1 290 -22 431 289 75 19 chr13 8025629 8025947 -93847222 - HAL1 LINE L1 -143 2364 2029 271 271 182 6 chr13 8026043 8026224 -93846945 - HAL1 LINE L1 -607 1900 1688 252 250 61 45 chr13 8026239 8026371 -93846798 + Charlie2 DNA MER1_type 2019 2152 -710 * 389 188 134 38 chr13 8026365 8026551 -93846618 + Charlie2 DNA MER1_type 2401 2604 -258 3136 62 60 0 chr13 8026552 8026985 -93846184 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 8026985 8027057 -93846112 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 8027083 8027138 -93846031 - L2 LINE L2 -103 3169 3117 719 92 46 35 chr13 8027138 8027312 -93845857 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 8027443 8027833 -93845336 + MLT2D LTR ERVL 1 362 -52 261 57 0 0 chr13 8027842 8027877 -93845292 + (CA)n Simple_repeat Simple_repeat 1 35 0 673 171 62 21 chr13 8027882 8028075 -93845094 + Charlie2 DNA MER1_type 2594 2794 -68 3766 186 64 30 chr13 8028100 8028488 -93844681 + L1MB3 LINE L1 4598 4971 -1212 1809 147 0 58 chr13 8028488 8028801 -93844368 + AluJb SINE Alu 1 295 -17 3766 186 64 30 chr13 8028801 8029945 -93843224 + L1MB3 LINE L1 4971 6173 -10 337 362 88 27 chr13 8030132 8030461 -93842708 + L2 LINE L2 2920 3268 -4 1613 181 57 10 chr13 8031437 8031735 -93841434 - AluJb SINE Alu 0 312 1 376 308 51 10 chr13 8032192 8032402 -93840767 + MIR SINE MIR 38 254 -8 293 359 0 0 chr13 8032523 8032615 -93840554 - L2 LINE L2 -19 3294 3203 212 175 0 0 chr13 8033405 8033445 -93839724 + T-rich Low_complexity Low_complexity 3 42 0 999 221 38 14 chr13 8035435 8035648 -93837521 - MER20 DNA MER1_type -1 218 1 245 275 190 16 chr13 8036163 8036410 -93836759 - L1MC/D LINE L1 -2265 5543 5254 267 312 135 18 chr13 8036789 8036959 -93836210 - L2 LINE L2 -369 2945 2756 24 0 0 0 chr13 8037173 8037197 -93835972 + AT_rich Low_complexity Low_complexity 1 24 0 399 254 53 77 chr13 8037279 8037617 -93835552 - HAL1b LINE L1 -841 507 178 2087 129 0 3 chr13 8037732 8038026 -93835143 - AluSx SINE Alu -19 293 1 2028 148 3 10 chr13 8038900 8039211 -93833958 - AluJo SINE Alu -1 311 3 1072 184 79 44 chr13 8039680 8039995 -93833174 + L1MA7 LINE L1 5966 6291 0 219 281 146 73 chr13 8040194 8040290 -93832879 - L2 LINE L2 -25 3247 3145 2259 98 0 16 chr13 8040850 8041166 -93832003 - AluSx SINE Alu -1 311 1 477 0 0 0 chr13 8043423 8043476 -93829693 + (TA)n Simple_repeat Simple_repeat 1 53 0 192 260 83 73 chr13 8043569 8043635 -93829534 - L2 LINE L2 0 3272 3206 344 306 87 35 chr13 8043635 8043765 -93829404 + MER5A DNA MER1_type 1 144 -45 1715 158 14 28 chr13 8043765 8044056 -93829113 - AluJb SINE Alu -14 298 12 344 306 87 35 chr13 8044056 8044098 -93829071 + MER5A DNA MER1_type 144 182 -7 523 229 76 111 chr13 8044380 8044777 -93828392 - L1MC4 LINE L1 -9 8033 7651 2350 93 3 0 chr13 8044966 8045267 -93827902 - AluY SINE Alu -9 302 1 2213 128 0 0 chr13 8045315 8045621 -93827548 + AluSx SINE Alu 1 306 -6 211 343 135 27 chr13 8046876 8047290 -93825879 + L2 LINE L2 2075 2533 -781 557 185 11 0 chr13 8047295 8047387 -93825782 - FLAM_A SINE Alu -49 93 1 263 287 37 29 chr13 8047687 8047823 -93825346 + Charlie2 DNA MER1_type 170 306 -2556 435 227 136 23 chr13 8048129 8048305 -93824864 + Charlie2a DNA MER1_type 1467 1662 -1200 1202 268 31 19 chr13 8048377 8048863 -93824306 + Charlie2a DNA MER1_type 1661 2152 -710 389 188 134 38 chr13 8048857 8049043 -93824126 + Charlie2a DNA MER1_type 2401 2604 -258 * 3136 62 60 0 chr13 8049044 8049477 -93823692 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 8049477 8049549 -93823620 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 8049575 8049630 -93823539 - L2 LINE L2 -103 3169 3117 755 84 34 50 chr13 8049630 8049809 -93823360 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 8049940 8050330 -93822839 + MLT2D LTR ERVL 1 362 -52 297 51 0 0 chr13 8050339 8050378 -93822791 + (CA)n Simple_repeat Simple_repeat 1 39 0 705 194 58 19 chr13 8050383 8050589 -93822580 + Charlie2a DNA MER1_type 2594 2807 -55 1561 212 40 52 chr13 8050602 8050993 -93822176 + L1MC4a LINE L1 4598 4985 -1161 1808 144 0 58 chr13 8050993 8051306 -93821863 + AluJb SINE Alu 1 295 -17 1561 212 40 52 chr13 8051306 8051334 -93821835 + L1MC4a LINE L1 4985 5012 -1134 339 293 72 80 chr13 8051686 8052252 -93820917 + L1 LINE L1 4217 4778 -1368 240 238 88 7 chr13 8052349 8052491 -93820678 + L1P LINE L1 4883 5045 -1101 410 284 66 25 chr13 8052571 8052827 -93820342 + L1 LINE L1 5150 5423 -748 687 319 60 45 chr13 8052839 8053434 -93819735 + L1MC4a LINE L1 5317 5920 -1888 1235 173 128 12 chr13 8053444 8053687 -93819482 - AluJo SINE Alu -30 282 12 180 0 0 0 chr13 8053735 8053755 -93819414 + (TG)n Simple_repeat Simple_repeat 2 21 0 1649 179 155 29 chr13 8054642 8054913 -93818256 - LTR54B LTR ERV1 -32 466 124 356 0 23 0 chr13 8054913 8054957 -93818212 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1649 179 155 29 chr13 8054957 8055099 -93818070 - LTR54B LTR ERV1 -374 124 1 261 273 34 23 chr13 8055410 8055498 -93817671 + L2 LINE L2 3184 3272 0 423 0 0 0 chr13 8056175 8056222 -93816947 + (CA)n Simple_repeat Simple_repeat 1 47 0 653 73 0 0 chr13 8057518 8057600 -93815569 + L1P LINE L1 2 83 -6063 1056 205 63 14 chr13 8060496 8060835 -93812334 - MSTD LTR MaLR 0 396 1 2231 104 19 0 chr13 8061144 8061451 -93811718 + AluSq SINE Alu 1 313 0 484 140 0 20 chr13 8061454 8061554 -93811615 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1700 218 19 14 chr13 8062112 8062475 -93810694 + MLT1A1 LTR MaLR 1 365 0 2265 106 0 0 chr13 8062988 8063280 -93809889 - AluSg SINE Alu -18 292 1 24 0 0 0 chr13 8064335 8064359 -93808810 + AT_rich Low_complexity Low_complexity 1 24 0 2391 90 3 0 chr13 8064645 8064946 -93808223 + AluSq SINE Alu 1 302 -11 417 305 89 39 chr13 8064962 8065244 -93807925 - L2 LINE L2 -35 3237 2942 335 200 0 0 chr13 8066365 8066425 -93806744 - MLT1J2 LTR MaLR -45 405 346 1694 255 30 30 chr13 8066443 8066976 -93806193 + MER74B LTR ERVL 56 588 -34 400 226 69 2 chr13 8067081 8067220 -93805949 - MLT1J2 LTR MaLR -229 180 36 2337 90 0 3 chr13 8070051 8070350 -93802819 + AluSx SINE Alu 1 298 -14 949 156 58 40 chr13 8070586 8070759 -93802410 - FRAM SINE Alu -1 175 1 1224 168 28 5 chr13 8070924 8071138 -93802031 + MER20 DNA MER1_type 1 219 0 837 130 0 3 chr13 8071447 8071670 -93801499 + AluSq SINE Alu 2 297 -16 477 243 56 21 chr13 8071679 8071823 -93801346 + MIR SINE MIR 73 221 -41 1972 127 28 11 chr13 8071865 8072148 -93801021 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr13 8072148 8072175 -93800994 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 266 108 29 chr13 8072975 8073079 -93800090 + L2 LINE L2 2392 2511 -803 1532 163 83 28 chr13 8073079 8073367 -93799802 - AluJo SINE Alu -8 304 1 288 266 108 29 chr13 8073367 8073401 -93799768 + L2 LINE L2 2511 2541 -773 726 150 92 0 chr13 8073431 8073551 -93799618 + MER3 DNA MER1_type 3 133 -76 4168 167 38 60 chr13 8073553 8073720 -93799449 - L1MB7 LINE L1 -8 6176 6007 2489 84 0 0 chr13 8073720 8074019 -93799150 + AluSx SINE Alu 1 299 -13 4168 167 38 60 chr13 8074019 8075028 -93798141 - L1MB7 LINE L1 -177 6007 5024 1538 185 19 0 chr13 8075028 8075298 -93797871 + L1PB4 LINE L1 5881 6155 -1 4168 167 38 60 chr13 8075298 8075331 -93797838 - L1MB7 LINE L1 -1160 5024 4992 816 147 78 11 chr13 8075337 8075528 -93797641 - L1MB4 LINE L1 -1 6179 5976 389 216 11 0 chr13 8075528 8075616 -93797553 + MER3 DNA MER1_type 121 209 0 559 306 76 20 chr13 8075632 8076093 -93797076 + L2 LINE L2 2595 3073 -240 1027 170 0 6 chr13 8076124 8076295 -93796874 - FRAM SINE Alu -10 166 1 2299 114 10 0 chr13 8076313 8076621 -93796548 - AluSx SINE Alu 0 312 2 476 257 131 23 chr13 8076631 8076806 -93796363 + L2 LINE L2 3119 3312 -1 1361 157 25 58 chr13 8077534 8077675 -93795494 + L1PA16 LINE L1 5896 6026 -140 2247 97 0 0 chr13 8077675 8077996 -93795173 + AluSg1 SINE Alu 2 322 0 1361 157 25 58 chr13 8077996 8078127 -93795042 + L1PA16 LINE L1 6026 6160 -6 205 171 0 0 chr13 8078309 8078344 -93794825 + A-rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 8078715 8078735 -93794434 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 507 307 70 18 chr13 8079893 8080235 -93792934 - L1ME4a LINE L1 -52 6069 5710 588 241 69 46 chr13 8080256 8080517 -93792652 - L2 LINE L2 -588 2726 2460 438 281 131 14 chr13 8081908 8082129 -93791040 + MER115 DNA AcHobo 1 247 -446 229 290 121 40 chr13 8084953 8085110 -93788059 + MIR SINE MIR 32 196 -63 257 174 14 0 chr13 8085355 8085424 -93787745 + (CA)n Simple_repeat Simple_repeat 1 70 0 334 224 51 10 chr13 8085426 8085524 -93787645 + MER5A DNA MER1_type 88 189 0 2260 66 0 0 chr13 8087571 8087845 -93785324 + AluY SINE Alu 33 306 -5 4407 128 38 46 chr13 8088423 8089183 -93783986 - LTR1 LTR ERV1 0 785 32 566 271 181 52 chr13 8090773 8091198 -93781971 + MLT1K LTR MaLR 17 496 -92 1405 206 41 16 chr13 8091466 8091782 -93781387 - MER33 DNA MER1_type 0 324 1 2314 70 39 0 chr13 8092392 8092678 -93780491 - AluY SINE Alu -14 297 1 210 302 215 19 chr13 8092746 8093057 -93780112 + L2 LINE L2 2591 2962 -352 3098 179 41 80 chr13 8093251 8094015 -93779154 + L1MB2 LINE L1 5438 6171 0 25 0 0 0 chr13 8095769 8095794 -93777375 + AT_rich Low_complexity Low_complexity 1 25 0 1171 60 7 0 chr13 8097085 8097235 -93775934 - MER41B LTR ERV1 0 635 485 * 1924 89 4 4 chr13 8097233 8097492 -93775677 - MER41A LTR ERV1 -295 259 1 390 42 0 0 chr13 8100330 8100378 -93772791 + (GA)n Simple_repeat Simple_repeat 1 48 0 465 198 10 0 chr13 8100504 8100600 -93772569 + MER5A DNA MER1_type 9 105 -84 627 51 0 0 chr13 8101646 8101725 -93771444 + (ATG)n Simple_repeat Simple_repeat 1 79 0 239 289 48 0 chr13 8101806 8101889 -93771280 - MIR SINE MIR -135 127 41 1275 115 22 0 chr13 8102011 8102194 -93770975 + AluSq SINE Alu 121 307 -6 2374 108 0 0 chr13 8103857 8104164 -93769005 - AluSq SINE Alu -6 307 1 660 216 52 71 chr13 8105771 8106039 -93767130 + L1ME3A LINE L1 5903 6165 -5 2253 89 10 0 chr13 8106096 8106387 -93766782 - AluSq SINE Alu -19 294 1 2113 116 7 3 chr13 8107330 8107623 -93765546 + AluSp SINE Alu 1 294 -19 261 0 0 0 chr13 8107997 8108026 -93765143 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 8108026 8108056 -93765113 + AT_rich Low_complexity Low_complexity 1 30 0 2320 99 0 3 chr13 8108632 8108935 -93764234 + AluSg SINE Alu 1 302 -8 2118 106 0 3 chr13 8110069 8110375 -93762794 - AluSx SINE Alu 0 305 1 2215 79 41 7 chr13 8110736 8111026 -93762143 - AluY SINE Alu -10 301 2 366 42 0 0 chr13 8111208 8111256 -93761913 + (TC)n Simple_repeat Simple_repeat 1 48 0 213 175 0 0 chr13 8111332 8111372 -93761797 + CT-rich Low_complexity Low_complexity 2 41 0 44786 37 5 1 chr13 8111800 8117929 -93755240 - L1PA4 LINE L1 0 6155 2 413 311 28 38 chr13 8118366 8118684 -93754485 - L2 LINE L2 -373 2941 2627 2614 181 71 68 chr13 8118776 8119496 -93753673 - MER72 LTR ERV1 0 722 1 34 55 0 0 chr13 8120218 8120273 -93752896 + AT_rich Low_complexity Low_complexity 1 55 0 186 240 56 104 chr13 8121501 8121626 -93751543 + L2 LINE L2 2203 2321 -993 297 0 0 0 chr13 8121691 8121724 -93751445 + (CA)n Simple_repeat Simple_repeat 1 33 0 675 120 0 0 chr13 8121777 8121902 -93751267 + AluSp/q SINE Alu 193 317 0 503 270 173 17 chr13 8122159 8122448 -93750721 + L2 LINE L2 2627 2960 -354 238 249 142 53 chr13 8122532 8122701 -93750468 + L2 LINE L2 3130 3313 0 357 310 7 45 chr13 8122703 8122749 -93750420 + MER5B DNA MER1_type 30 76 -102 1303 193 9 0 chr13 8122749 8122982 -93750187 - MER46A DNA MER2_type 0 236 2 357 310 7 45 chr13 8122982 8123090 -93750079 + MER5B DNA MER1_type 76 178 0 180 0 0 0 chr13 8124167 8124187 -93748982 + (TC)n Simple_repeat Simple_repeat 2 21 0 1991 69 3 73 chr13 8125709 8125998 -93747171 + AluSx SINE Alu 11 279 -33 353 125 0 0 chr13 8126001 8126049 -93747120 + AluS SINE Alu 230 277 -23 349 118 0 0 chr13 8126052 8126144 -93747025 + AluSc SINE Alu 230 321 0 1033 174 25 45 chr13 8127845 8128176 -93744993 + L1MA6 LINE L1 5997 6298 -2 1904 173 48 41 chr13 8128407 8128870 -93744299 - L1MB4 LINE L1 -39 6141 5676 21 0 0 0 chr13 8129674 8129695 -93743474 + AT_rich Low_complexity Low_complexity 1 21 0 3827 169 36 12 chr13 8130635 8130907 -93742262 + L1MA7 LINE L1 5509 5773 -518 369 0 0 0 chr13 8130907 8130948 -93742221 + (CA)n Simple_repeat Simple_repeat 2 42 0 3827 169 36 12 chr13 8130948 8131430 -93741739 + L1MA7 LINE L1 5773 6281 -10 213 266 121 32 chr13 8131672 8131796 -93741373 + MIR SINE MIR 15 149 -113 267 360 22 14 chr13 8132621 8132760 -93740409 + MIR3 SINE MIR 43 182 -26 279 290 117 61 chr13 8132775 8133203 -93739966 + L2 LINE L2 1931 2382 -932 582 268 199 35 chr13 8134017 8134420 -93738749 - LTR33A LTR ERVL 0 523 55 189 173 19 39 chr13 8134554 8134606 -93738563 + L2 LINE L2 3262 3312 -1 239 304 72 0 chr13 8135369 8135438 -93737731 - MIR3 SINE MIR -26 182 109 180 77 0 0 chr13 8136034 8136060 -93737109 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 299 308 76 22 chr13 8136176 8136373 -93736796 - MIR SINE MIR -54 208 4 1577 174 0 71 chr13 8138528 8138838 -93734331 - AluJo SINE Alu -23 289 2 1800 135 35 7 chr13 8139567 8139849 -93733320 + AluJb SINE Alu 21 310 -2 2232 103 3 22 chr13 8140087 8140398 -93732771 + AluSg SINE Alu 1 305 -5 2317 181 42 2 chr13 8142970 8143400 -93729769 - MLT1C LTR MaLR 0 467 21 2671 102 6 3 chr13 8143439 8143801 -93729368 + THE1B LTR MaLR 1 363 -1 2368 76 0 10 chr13 8144003 8144306 -93728863 + AluY SINE Alu 1 300 -11 2318 95 10 0 chr13 8144482 8144777 -93728392 - AluSq SINE Alu -15 298 1 341 333 26 19 chr13 8145193 8145349 -93727820 + L2 LINE L2 3116 3272 0 842 161 0 0 chr13 8145469 8145593 -93727576 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr13 8145599 8145623 -93727546 + AT_rich Low_complexity Low_complexity 1 24 0 689 221 0 0 chr13 8147572 8147712 -93725457 + Tigger4(Zombi) DNA MER2_type 1 140 -2591 1504 125 141 4 chr13 8148328 8148584 -93724585 + AluJo SINE Alu 1 291 -21 438 305 155 29 chr13 8148901 8149504 -93723665 + L2 LINE L2 2632 3311 -2 1701 175 53 50 chr13 8149810 8150170 -93722999 + MER46B DNA MER2_type 1 236 0 2387 97 0 3 chr13 8150516 8150826 -93722343 + AluSq SINE Alu 1 309 -4 2125 115 0 26 chr13 8151602 8151906 -93721263 - AluSx SINE Alu -16 296 1 310 230 204 102 chr13 8152069 8152295 -93720874 + MIR SINE MIR 2 250 -12 403 325 76 30 chr13 8153173 8153410 -93719759 + MIR SINE MIR 9 256 -6 210 373 31 6 chr13 8153473 8153634 -93719535 - L2 LINE L2 -237 3035 2871 288 300 71 36 chr13 8153769 8153909 -93719260 - MIR SINE MIR -26 236 92 2041 170 84 5 chr13 8154189 8154583 -93718586 - MSTB LTR MaLR -1 425 1 204 200 0 0 chr13 8156076 8156131 -93717038 + T-rich Low_complexity Low_complexity 1 55 0 2416 63 0 0 chr13 8156322 8156623 -93716546 + AluY SINE Alu 4 304 -7 22 35 0 0 chr13 8156668 8156697 -93716472 + AT_rich Low_complexity Low_complexity 1 29 0 2133 117 0 0 chr13 8157594 8157894 -93715275 - AluSx SINE Alu -12 300 1 276 283 198 6 chr13 8159531 8159708 -93713461 + MIR SINE MIR 13 223 -39 344 266 99 17 chr13 8160856 8161077 -93712092 - L1ME2 LINE L1 -298 5866 5629 574 237 84 42 chr13 8161082 8161177 -93711992 - L1ME2 LINE L1 -913 5233 5143 2017 114 0 7 chr13 8161177 8161475 -93711694 - AluSx SINE Alu -16 296 1 574 237 84 42 chr13 8161475 8161641 -93711528 - L1ME2 LINE L1 -1003 5143 4961 1824 179 33 15 chr13 8162063 8162399 -93710770 + MER7A DNA MER2_type 2 341 -5 2019 104 35 0 chr13 8162977 8163266 -93709903 + AluSx SINE Alu 1 299 -13 1316 163 26 0 chr13 8163275 8163502 -93709667 + 7SLRNA srpRNA srpRNA 51 283 -37 26 0 0 0 chr13 8163521 8163547 -93709622 + AT_rich Low_complexity Low_complexity 1 26 0 468 277 54 14 chr13 8163570 8163718 -93709451 + MIR SINE MIR 24 177 -85 442 264 98 31 chr13 8164797 8164960 -93708209 - MIR SINE MIR -87 175 2 2138 115 0 0 chr13 8165494 8165799 -93707370 - AluSx SINE Alu -7 305 1 749 209 173 5 chr13 8167091 8167282 -93705887 - MIR SINE MIR -4 258 36 1158 256 33 39 chr13 8167287 8167650 -93705519 + MLT1A2 LTR MaLR 1 361 -13 1987 134 0 0 chr13 8168559 8168851 -93704318 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 8169431 8169454 -93703715 + AT_rich Low_complexity Low_complexity 1 23 0 550 176 0 0 chr13 8169471 8169573 -93703596 - HY1 scRNA scRNA -10 102 1 2690 223 55 18 chr13 8169711 8170379 -93702790 + L1ME2 LINE L1 5456 6148 -16 1459 179 36 17 chr13 8171122 8171423 -93701746 - AluJo SINE Alu -5 307 1 216 0 0 0 chr13 8172274 8172298 -93700871 + (A)n Simple_repeat Simple_repeat 1 24 0 12386 88 9 2 chr13 8172310 8173898 -93699271 + L1PA7 LINE L1 8 1606 -4855 16670 89 5 41 chr13 8173898 8177063 -93696106 + L1PA7 LINE L1 3338 6469 0 280 75 132 0 chr13 8177655 8177708 -93695461 - L1MA4A LINE L1 -5 6298 6239 401 296 68 14 chr13 8178460 8178680 -93694489 - L1ME4a LINE L1 -296 5825 5594 1002 197 0 5 chr13 8180613 8180806 -93692363 + AluJo SINE Alu 121 312 0 2339 84 0 3 chr13 8181865 8182175 -93690994 + AluSc SINE Alu 1 309 0 2145 99 3 3 chr13 8183629 8183922 -93689247 + AluSx SINE Alu 1 293 -19 184 311 94 28 chr13 8188473 8188579 -93684590 - L2 LINE L2 -2 3311 3199 300 269 180 30 chr13 8189281 8189448 -93683721 + MIR SINE MIR 40 231 -31 352 227 118 36 chr13 8192831 8192941 -93680228 + MIR SINE MIR 16 134 -74 2267 62 0 29 chr13 8194043 8194349 -93678820 + AluY SINE Alu 1 297 -14 382 269 32 118 chr13 8194351 8194819 -93678350 - L1MC5 LINE L1 -32 7929 7502 592 224 8 8 chr13 8194826 8194974 -93678195 - FLAM_A SINE Alu 0 142 6 218 259 24 35 chr13 8195077 8195162 -93678007 - MIR SINE MIR -62 146 63 2068 95 0 11 chr13 8195532 8195778 -93677391 - AluSg1 SINE Alu 0 305 61 180 0 0 0 chr13 8195778 8195798 -93677371 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2068 95 0 11 chr13 8195798 8195859 -93677310 - AluSg1 SINE Alu -244 61 1 231 36 0 0 chr13 8196382 8196410 -93676759 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr13 8196424 8196455 -93676714 + AT_rich Low_complexity Low_complexity 1 31 0 2326 48 3 0 chr13 8197411 8197701 -93675468 + AluY SINE Alu 1 291 -20 1864 203 60 21 chr13 8198605 8199039 -93674130 - MER39 LTR ERV1 0 707 257 298 136 17 71 chr13 8199012 8199113 -93674056 - MER39 LTR ERV1 -560 93 1 * 250 311 189 5 chr13 8199113 8199303 -93673866 - L2 LINE L2 -285 3028 2804 1018 184 0 6 chr13 8199476 8199650 -93673519 + FAM SINE Alu 1 173 -2 26 50 0 0 chr13 8200393 8200433 -93672736 + AT_rich Low_complexity Low_complexity 1 40 0 24 96 0 0 chr13 8200596 8200669 -93672500 + AT_rich Low_complexity Low_complexity 1 73 0 1816 136 0 14 chr13 8202704 8202999 -93670170 + AluJo SINE Alu 3 293 -19 2087 144 20 0 chr13 8203073 8203379 -93669790 + AluSx SINE Alu 1 312 0 262 306 48 43 chr13 8204187 8204373 -93668796 - MLT1L LTR MaLR 0 615 429 4612 133 22 13 chr13 8204812 8205587 -93667582 - L1MA9 LINE L1 0 6312 5531 21 36 0 0 chr13 8205784 8205812 -93667357 + AT_rich Low_complexity Low_complexity 1 28 0 806 238 161 45 chr13 8208937 8209383 -93663786 - L2 LINE L2 -1 3312 2815 3132 162 34 35 chr13 8210005 8210654 -93662515 - L1MD1 LINE L1 0 6636 5989 338 174 29 14 chr13 8210679 8210748 -93662421 - MLT1H LTR MaLR -54 495 426 505 113 12 0 chr13 8210766 8210846 -93662323 - L1MB7 LINE L1 -21 6163 6083 * 8449 219 46 81 chr13 8210839 8211440 -93661729 - L1MD1 LINE L1 -627 6009 5389 5257 9 0 0 chr13 8211440 8212019 -93661150 - L1PA2 LINE L1 -1 6154 5576 8449 219 46 81 chr13 8212019 8215056 -93658113 - L1MD1 LINE L1 -1247 5389 2504 5091 205 122 40 chr13 8215083 8215268 -93657901 - L1MD1 LINE L1 -4338 2202 2034 2121 127 0 13 chr13 8215268 8215444 -93657725 - AluSx SINE Alu -4 308 136 2283 110 0 0 chr13 8215444 8215735 -93657434 - AluSx SINE Alu -21 291 1 2121 127 0 13 chr13 8215735 8215866 -93657303 - AluSx SINE Alu -176 136 5 5091 205 122 40 chr13 8215866 8217336 -93655833 - L1MD1 LINE L1 -4506 2034 258 221 273 182 0 chr13 8218399 8218498 -93654671 + L2 LINE L2 3153 3269 -3 23 0 0 0 chr13 8219452 8219475 -93653694 + AT_rich Low_complexity Low_complexity 1 23 0 3967 185 51 30 chr13 8219617 8220747 -93652422 - L1MB5 LINE L1 -6 6168 5009 1196 154 24 12 chr13 8220751 8220997 -93652172 - L1MA7 LINE L1 0 6291 6043 2550 70 9 0 chr13 8220997 8221327 -93651842 + L1PA6 LINE L1 5821 6154 0 11831 165 43 9 chr13 8221327 8221600 -93651569 - L1MA7 LINE L1 -233 6058 5796 438 20 0 0 chr13 8221600 8221651 -93651518 + (TG)n Simple_repeat Simple_repeat 2 52 0 11831 165 43 9 chr13 8221651 8224404 -93648765 - L1MA7 LINE L1 -495 5796 2930 4683 224 31 27 chr13 8224405 8225680 -93647489 - L1MB5 LINE L1 -1130 5016 3737 307 289 110 46 chr13 8226330 8226676 -93646493 + L1MEd LINE L1 18 385 -5734 21 57 0 0 chr13 8227857 8227892 -93645277 + AT_rich Low_complexity Low_complexity 1 35 0 1335 280 112 27 chr13 8227909 8228501 -93644668 - MER115 DNA AcHobo -1 692 51 2258 110 3 0 chr13 8228535 8228835 -93644334 + AluSx SINE Alu 1 301 -11 233 351 30 8 chr13 8228911 8229042 -93644127 + MIR3 SINE MIR 64 197 -11 2077 168 37 0 chr13 8229896 8230270 -93642899 - MLT1B LTR MaLR 0 390 3 1928 149 7 14 chr13 8230403 8230699 -93642470 + AluJo SINE Alu 1 294 -18 248 308 17 0 chr13 8231382 8231499 -93641670 + G-rich Low_complexity Low_complexity 1 119 0 2290 117 3 0 chr13 8232144 8232453 -93640716 + AluSq SINE Alu 1 310 -3 438 229 208 0 chr13 8232870 8232982 -93640187 + MIR SINE MIR 31 118 -144 2192 187 17 17 chr13 8232982 8233441 -93639728 - LOR1b LTR ERV1 -2 459 1 438 229 208 0 chr13 8233441 8233520 -93639649 + MIR SINE MIR 118 262 0 191 368 80 6 chr13 8233522 8233685 -93639484 + MIR SINE MIR 66 240 -22 281 294 64 53 chr13 8235603 8235790 -93637379 - MIR3 SINE MIR -12 196 8 210 37 0 0 chr13 8236742 8236769 -93636400 + (TTCTG)n Simple_repeat Simple_repeat 3 29 0 764 196 82 23 chr13 8237472 8237691 -93635478 + MIR SINE MIR 31 262 0 2176 118 0 10 chr13 8237863 8238159 -93635010 + AluSx SINE Alu 1 293 -19 261 139 0 0 chr13 8243893 8243936 -93629233 + (A)n Simple_repeat Simple_repeat 1 43 0 195 289 0 125 chr13 8245897 8245951 -93627218 + L3 LINE CR1 1480 1539 -38 1071 197 51 91 chr13 8245951 8246124 -93627045 + MER58B DNA MER1_type 2 180 -2240 2458 53 3 41 chr13 8246124 8246443 -93626726 + AluY SINE Alu 1 307 -4 1071 197 51 91 chr13 8246443 8246579 -93626590 + MER58B DNA MER1_type 180 298 -2122 1689 157 3 39 chr13 8246579 8246891 -93626278 - AluJo SINE Alu -11 301 1 1071 197 51 91 chr13 8246891 8246930 -93626239 + MER58B DNA MER1_type 298 337 -4 195 289 0 125 chr13 8246930 8246979 -93626190 + L3 LINE CR1 1539 1570 -7 1962 134 13 10 chr13 8248497 8248804 -93624365 + AluSx SINE Alu 1 308 -4 2198 121 0 0 chr13 8250561 8250858 -93622311 + AluSx SINE Alu 1 297 -15 342 0 0 0 chr13 8252404 8252442 -93620727 + (CA)n Simple_repeat Simple_repeat 2 39 0 1321 163 65 0 chr13 8254045 8254142 -93619027 - AluJo SINE Alu -83 229 140 423 0 0 0 chr13 8254142 8254189 -93618980 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1321 163 65 0 chr13 8254189 8254306 -93618863 - AluJo SINE Alu -172 140 1 648 191 63 74 chr13 8254555 8254695 -93618474 + MER5A DNA MER1_type 1 140 -49 2065 146 0 0 chr13 8254695 8254997 -93618172 - AluJb SINE Alu -10 302 1 648 191 63 74 chr13 8254997 8255045 -93618124 + MER5A DNA MER1_type 140 187 -2 4059 128 44 23 chr13 8256098 8256216 -93616953 - L1MA4 LINE L1 -5 6295 6181 2216 115 3 0 chr13 8256216 8256520 -93616649 - AluSg SINE Alu -5 305 1 4059 128 44 23 chr13 8256520 8257086 -93616083 - L1MA4 LINE L1 -119 6181 5597 198 188 0 0 chr13 8257094 8257126 -93616043 - MIR SINE MIR -10 252 221 2280 95 0 7 chr13 8257587 8257881 -93615288 + AluSg SINE Alu 1 292 -18 394 271 54 8 chr13 8258880 8259009 -93614160 - L2 LINE L2 -52 3261 3127 354 366 21 7 chr13 8259557 8259699 -93613470 + MIR SINE MIR 22 165 -97 2342 162 80 2 chr13 8259891 8260329 -93612840 - LOR1a LTR ERV1 -25 472 1 2039 120 28 0 chr13 8260391 8260674 -93612495 - AluSq SINE Alu -22 291 1 584 128 43 11 chr13 8260706 8260800 -93612369 - LTR12 LTR ERV1 -229 485 389 329 147 59 88 chr13 8260800 8260902 -93612267 - LTR30 LTR ERV1 -79 643 379 528 206 39 25 chr13 8260903 8261104 -93612065 - LTR12 LTR ERV1 -429 1475 96 247 250 0 0 chr13 8261104 8261156 -93612013 - LTR30 LTR ERV1 -670 52 1 227 301 204 0 chr13 8261202 8261295 -93611874 - L2 LINE L2 -38 3234 3123 394 146 0 0 chr13 8261309 8261377 -93611792 - MLT1G1 LTR MaLR -6 589 476 794 194 0 8 chr13 8261388 8261522 -93611647 + FLAM_A SINE Alu 1 133 0 2667 161 60 39 chr13 8261531 8262101 -93611068 + L1MB3 LINE L1 5595 6176 -7 758 245 155 49 chr13 8262104 8262222 -93610947 - MLT1H1 LTR MaLR -55 540 436 1227 213 135 27 chr13 8262222 8262556 -93610613 + MLT1A2 LTR MaLR 1 370 -4 758 245 155 49 chr13 8262556 8262884 -93610285 - MLT1H1 LTR MaLR -159 436 3 2172 114 0 63 chr13 8263512 8263844 -93609325 - AluSq SINE Alu -2 311 1 1880 185 73 0 chr13 8264457 8264797 -93608372 - MER47A DNA MER2_type 0 366 2 225 280 75 65 chr13 8264869 8264962 -93608207 - L2 LINE L2 -33 3239 3146 2047 138 7 0 chr13 8265181 8265478 -93607691 + AluSq SINE Alu 1 299 -14 205 278 139 78 chr13 8265610 8265790 -93607379 - MIR SINE MIR -49 213 23 1647 170 0 55 chr13 8265813 8266125 -93607044 + AluJo SINE Alu 1 295 -17 432 228 304 35 chr13 8266391 8266887 -93606282 + LTR50 LTR ERVL 1 758 -37 233 176 77 66 chr13 8266892 8266983 -93606186 + L1ME LINE L1 5582 5673 -497 1442 103 0 10 chr13 8266989 8267216 -93605953 - AluSq SINE Alu 0 317 93 268 250 0 0 chr13 8267380 8267432 -93605737 + L1ME2 LINE L1 6097 6148 -16 1071 167 162 9 chr13 8267456 8267666 -93605503 + AluY SINE Alu 44 285 -26 1570 162 42 7 chr13 8267697 8267981 -93605188 + AluJb SINE Alu 1 294 -18 2515 80 0 0 chr13 8269406 8269717 -93603452 - AluSx SINE Alu -1 311 1 243 0 0 0 chr13 8269906 8269933 -93603236 + (GA)n Simple_repeat Simple_repeat 2 28 0 759 156 0 0 chr13 8271071 8271203 -93601966 + FRAM SINE Alu 38 169 0 433 235 154 15 chr13 8271999 8272135 -93601034 + MIR3 SINE MIR 34 188 -20 285 355 13 26 chr13 8272477 8272632 -93600537 - L2 LINE L2 -2 3311 3159 641 243 0 0 chr13 8272835 8272971 -93600198 - MIR SINE MIR -5 257 122 24 32 0 0 chr13 8274216 8274247 -93598922 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 8274618 8274649 -93598520 + AT_rich Low_complexity Low_complexity 1 31 0 3603 166 35 12 chr13 8275012 8275748 -93597421 + L1MB5 LINE L1 5223 5972 -212 764 171 8 16 chr13 8275748 8275871 -93597298 + FLAM_C SINE Alu 1 122 -21 984 157 120 0 chr13 8275882 8276073 -93597096 + L1MB5 LINE L1 5961 6174 0 637 159 146 13 chr13 8276290 8276441 -93596728 + MLT1B LTR MaLR 1 171 -219 191 268 0 163 chr13 8276756 8276830 -93596339 + L2 LINE L2 3179 3217 -96 1654 158 49 3 chr13 8276830 8277115 -93596054 - AluJo SINE Alu -14 298 1 191 268 0 163 chr13 8277115 8277193 -93595976 + L2 LINE L2 3217 3306 -7 * 306 163 0 0 chr13 8277163 8277212 -93595957 - L2 LINE L2 -1 3312 3264 1956 125 24 7 chr13 8277366 8277653 -93595516 + AluSx SINE Alu 10 301 -11 25 31 0 0 chr13 8278208 8278240 -93594929 + AT_rich Low_complexity Low_complexity 1 32 0 272 242 0 16 chr13 8279036 8279098 -93594071 - MIR SINE MIR -2 260 200 216 0 0 0 chr13 8279981 8280005 -93593164 + (ATG)n Simple_repeat Simple_repeat 2 25 0 2064 117 11 3 chr13 8280005 8280287 -93592882 - AluSx SINE Alu -28 284 1 1978 125 35 0 chr13 8283236 8283524 -93589645 + AluSg SINE Alu 1 298 -12 1973 127 0 3 chr13 8284009 8284334 -93588835 - AluSx SINE Alu 0 326 3 713 198 0 0 chr13 8284561 8284677 -93588492 - FLAM_A SINE Alu -19 123 8 214 313 214 10 chr13 8286750 8286942 -93586227 - L2 LINE L2 -1 3312 3082 1341 280 123 23 chr13 8289820 8290485 -93582684 + HAL1 LINE L1 1619 2350 -157 1219 169 9 144 chr13 8290791 8291139 -93582030 + AluJo SINE Alu 2 302 0 494 193 17 8 chr13 8292418 8292605 -93580564 - MER8 DNA MER2_type 0 239 8 1419 181 11 22 chr13 8293156 8293433 -93579736 + AluJb SINE Alu 33 306 -6 1559 170 30 22 chr13 8293657 8293927 -93579242 + AluSx SINE Alu 1 272 -40 22 35 0 0 chr13 8295065 8295094 -93578075 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 8295524 8295552 -93577617 + AT_rich Low_complexity Low_complexity 1 28 0 2426 72 0 28 chr13 8295864 8296184 -93576985 - AluY SINE Alu 0 311 1 514 238 159 9 chr13 8296185 8296399 -93576770 - L1M4 LINE L1 -3744 2402 2157 243 192 0 39 chr13 8296573 8296625 -93576544 - MER3 DNA MER1_type 0 209 160 2752 238 31 14 chr13 8297080 8297789 -93575380 + MER54A LTR ERVL 179 899 -2 435 216 22 3 chr13 8297790 8297895 -93575274 - L1ME1 LINE L1 -332 5834 5737 440 272 6 31 chr13 8297953 8298115 -93575054 - L1ME1 LINE L1 -413 5753 5596 201 39 0 0 chr13 8298121 8298147 -93575022 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1330 235 129 56 chr13 8298255 8298547 -93574622 - L1ME3A LINE L1 -135 6035 5766 1647 186 0 20 chr13 8298547 8298848 -93574321 - AluJo SINE Alu -16 296 2 1330 235 129 56 chr13 8298848 8299199 -93573970 - L1ME3A LINE L1 -404 5766 5319 736 245 108 58 chr13 8299240 8299446 -93573723 - L1ME3A LINE L1 -2828 3318 3124 1647 189 3 3 chr13 8299446 8299747 -93573422 - AluJb SINE Alu -11 301 1 736 245 108 58 chr13 8299747 8300079 -93573090 - L1ME3A LINE L1 -3022 3124 2753 736 197 0 8 chr13 8300538 8300665 -93572504 - FLAM_C SINE Alu -16 127 2 200 308 0 33 chr13 8300914 8301005 -93572164 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2185 103 31 0 chr13 8301020 8301311 -93571858 - AluSc SINE Alu -9 300 1 357 168 107 92 chr13 8301315 8301446 -93571723 - L1MC4a LINE L1 -1869 5939 5807 1163 254 84 25 chr13 8301649 8302108 -93571061 + MLT1H1 LTR MaLR 2 452 -103 486 221 64 7 chr13 8302258 8302398 -93570771 - MIR SINE MIR -98 164 17 2132 113 0 0 chr13 8302540 8302833 -93570336 + AluJb SINE Alu 1 293 -19 1931 127 74 0 chr13 8302901 8303185 -93569984 + AluSx SINE Alu 3 307 -5 34 0 0 0 chr13 8303873 8303907 -93569262 + AT_rich Low_complexity Low_complexity 1 34 0 1630 190 80 131 chr13 8305144 8305579 -93567590 - L1MC4 LINE L1 -89 7953 7560 1875 136 26 19 chr13 8305579 8305887 -93567282 - AluJb SINE Alu -2 310 1 1630 190 80 131 chr13 8305887 8306092 -93567077 - L1MC4 LINE L1 -482 7560 7346 1594 180 0 33 chr13 8306716 8307016 -93566153 - AluJo SINE Alu -22 290 1 35 41 0 0 chr13 8309584 8309633 -93563536 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 8309691 8309712 -93563457 + AT_rich Low_complexity Low_complexity 1 21 0 829 315 15 11 chr13 8310677 8310937 -93562232 + MIR SINE MIR 1 261 -1 2194 138 0 0 chr13 8311131 8311435 -93561734 - AluSx SINE Alu -8 304 1 3186 182 35 12 chr13 8311706 8312542 -93560627 + L1MB4 LINE L1 5259 6179 -1 613 264 80 45 chr13 8312977 8313300 -93559869 - L1MEd LINE L1 -4873 1246 1003 2248 115 0 7 chr13 8313300 8313605 -93559564 - AluSx SINE Alu -9 303 1 613 264 80 45 chr13 8313605 8313684 -93559485 - L1MEd LINE L1 -5116 1003 928 195 129 0 0 chr13 8313684 8313715 -93559454 + (TA)n Simple_repeat Simple_repeat 1 31 0 333 224 24 0 chr13 8313717 8313802 -93559367 - L1MC4 LINE L1 -1342 6700 6614 1923 113 30 0 chr13 8313809 8314075 -93559094 - AluSx SINE Alu -38 274 1 280 394 83 19 chr13 8314311 8314674 -93558495 - L2 LINE L2 -4 3268 2883 25 51 0 0 chr13 8314759 8314798 -93558371 + AT_rich Low_complexity Low_complexity 1 39 0 237 132 0 0 chr13 8315314 8315352 -93557817 + (A)n Simple_repeat Simple_repeat 1 38 0 2307 105 0 0 chr13 8315387 8315683 -93557486 + AluSx SINE Alu 1 296 -16 201 147 0 0 chr13 8316865 8316899 -93556270 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 1508 190 28 24 chr13 8317177 8317243 -93555926 + MER45B DNA AcHobo 38 102 -938 2154 104 20 7 chr13 8317243 8317541 -93555628 - AluSq SINE Alu -11 302 1 1508 190 28 24 chr13 8317541 8317763 -93555406 + MER45B DNA AcHobo 102 327 -713 573 128 12 0 chr13 8317763 8317849 -93555320 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 8317849 8318037 -93555132 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 8318039 8318139 -93555030 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 8319454 8319498 -93553671 + A-rich Low_complexity Low_complexity 1 47 0 498 332 94 0 chr13 8319762 8319985 -93553184 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 8320098 8320136 -93553033 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 8320283 8320517 -93552652 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 8320517 8320813 -93552356 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 8320813 8321021 -93552148 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 8321051 8321364 -93551805 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 8322137 8322187 -93550982 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 8322569 8322865 -93550304 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 8323570 8323690 -93549479 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 8323690 8323942 -93549227 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 8323942 8324089 -93549080 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 8324755 8324934 -93548235 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 8324936 8325480 -93547689 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 8327504 8327583 -93545586 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 8328314 8328621 -93544548 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 8328920 8329092 -93544077 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 8329474 8329572 -93543597 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 8330467 8330513 -93542656 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 8333003 8333182 -93539987 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 8333196 8333316 -93539853 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 8333318 8333388 -93539781 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 8333510 8333818 -93539351 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 8334284 8334363 -93538806 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 8334444 8334649 -93538520 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 8334699 8334786 -93538383 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 8335630 8335675 -93537494 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 8337405 8337493 -93535676 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 8339508 8339746 -93533423 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 8340474 8340561 -93532608 - L2 LINE L2 0 3313 3204 194 361 74 9 chr13 8340617 8340725 -93532444 + L2 LINE L2 3118 3232 -40 25 51 0 0 chr13 8341557 8341596 -93531573 + AT_rich Low_complexity Low_complexity 1 39 0 2370 100 0 0 chr13 8341761 8342060 -93531109 + AluSc SINE Alu 1 299 -10 2157 146 17 14 chr13 8342220 8342577 -93530592 - L1MB7 LINE L1 -9 6175 5818 813 273 174 28 chr13 8342668 8343064 -93530105 - LTR16A1 LTR ERVL -1 456 3 2699 306 77 43 chr13 8343148 8345494 -93527675 - ERVL LTR ERVL -90 4906 2808 371 236 47 8 chr13 8345526 8345653 -93527516 - Charlie5 DNA MER1_type -85 2527 2396 23 33 0 0 chr13 8347376 8347406 -93525763 + AT_rich Low_complexity Low_complexity 1 30 0 2487 59 0 34 chr13 8347972 8348294 -93524875 - AluY SINE Alu 0 311 1 205 170 57 38 chr13 8348474 8348527 -93524642 + L2 LINE L2 3207 3260 -12 2139 142 3 0 chr13 8348763 8349073 -93524096 + AluSx SINE Alu 1 311 -1 467 209 35 61 chr13 8350027 8350142 -93523027 + FLAM_A SINE Alu 3 114 -19 21 0 0 0 chr13 8350145 8350166 -93523003 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 72 0 chr13 8350714 8350839 -93522330 + L2 LINE L2 3168 3301 -12 1642 120 84 22 chr13 8350965 8351239 -93521930 + AluSq SINE Alu 1 291 -22 216 343 135 19 chr13 8351525 8351732 -93521437 + L2 LINE L2 2127 2357 -957 1128 276 138 29 chr13 8352698 8353248 -93519921 - MLT1L LTR MaLR -3 612 3 265 217 42 25 chr13 8353257 8353377 -93519792 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 26 0 0 0 chr13 8353415 8353441 -93519728 + AT_rich Low_complexity Low_complexity 1 26 0 1747 136 0 0 chr13 8353514 8353757 -93519412 + AluSx SINE Alu 1 243 -69 638 135 0 0 chr13 8353757 8353846 -93519323 - AluS SINE Alu -222 90 2 363 265 44 37 chr13 8353885 8354021 -93519148 + L1ME LINE L1 5672 5808 -313 1912 264 39 34 chr13 8354459 8355047 -93518122 - MLT1E LTR MaLR -2 591 1 410 308 65 55 chr13 8355924 8356232 -93516937 + MLT1J2 LTR MaLR 21 331 -119 1844 142 7 4 chr13 8356818 8357092 -93516077 + AluSq SINE Alu 31 305 -8 1893 164 0 3 chr13 8357417 8357731 -93515438 - AluJb SINE Alu 0 312 1 586 266 0 0 chr13 8358325 8358438 -93514731 - MER81 DNA DNA -1 113 1 1890 138 20 20 chr13 8358565 8358862 -93514307 + AluJo SINE Alu 1 297 -15 2409 53 0 0 chr13 8359805 8360130 -93513039 - AluY SINE Alu 0 325 1 691 312 118 30 chr13 8360621 8361265 -93511904 - L1ME4a LINE L1 -96 6025 5314 1726 228 64 67 chr13 8362152 8362842 -93510327 - L1ME4a LINE L1 -1099 5047 4360 * 7061 241 73 43 chr13 8362833 8363164 -93510005 - L1MEc LINE L1 -1542 4673 4353 1899 185 10 31 chr13 8363164 8363554 -93509615 - L1MB7 LINE L1 0 6184 5803 7061 241 73 43 chr13 8363554 8363798 -93509371 - L1MEc LINE L1 -1862 4353 4118 2036 100 57 0 chr13 8363798 8364077 -93509092 - AluY SINE Alu -16 295 1 7061 241 73 43 chr13 8364077 8365784 -93507385 - L1MEc LINE L1 -2097 4118 2463 599 169 16 0 chr13 8365784 8365908 -93507261 - L1MB2 LINE L1 -2 6169 6044 7061 241 73 43 chr13 8365908 8366070 -93507099 - L1MEc LINE L1 -3752 2463 2307 1808 161 0 7 chr13 8366070 8366356 -93506813 - AluSx SINE Alu -26 286 3 7061 241 73 43 chr13 8366356 8367849 -93505320 - L1MEc LINE L1 -3908 2307 656 740 132 8 0 chr13 8367881 8367898 -93505271 - L1MB7 LINE L1 -309 5875 5860 1626 119 5 0 chr13 8367898 8368117 -93505052 + AluSg/x SINE Alu 73 292 -20 740 132 8 0 chr13 8368117 8368233 -93504936 - L1MB7 LINE L1 -324 5860 5759 244 281 173 43 chr13 8369624 8369763 -93503406 - MER5B DNA MER1_type -1 177 21 300 207 12 73 chr13 8370553 8370635 -93502534 + MER5B DNA MER1_type 2 78 -100 440 199 53 53 chr13 8370666 8370757 -93502412 - MER5A DNA MER1_type -58 131 38 4269 119 39 2 chr13 8370757 8371369 -93501800 + MER41B LTR ERV1 1 635 0 440 199 53 53 chr13 8371369 8371408 -93501761 - MER5A DNA MER1_type -150 39 1 210 179 26 0 chr13 8371475 8371514 -93501655 + CT-rich Low_complexity Low_complexity 1 40 0 2263 97 3 0 chr13 8371839 8372129 -93501040 - AluSx SINE Alu -21 291 1 806 185 23 0 chr13 8372452 8372625 -93500544 + MER69 DNA AcHobo 2344 2520 -6 283 262 78 48 chr13 8373533 8373636 -93499533 - MIR SINE MIR -80 128 23 432 284 12 8 chr13 8373640 8373772 -93499397 + MIR SINE MIR 13 147 -62 4530 259 103 27 chr13 8374010 8375835 -93497334 - L2 LINE L2 -1 3312 1357 1447 176 68 3 chr13 8376681 8376988 -93496181 - L1MB3 LINE L1 0 6183 5857 2131 138 0 0 chr13 8377294 8377591 -93495578 + AluSx SINE Alu 1 297 -15 13984 132 23 121 chr13 8377601 8378493 -93494676 + L1P LINE L1 12 990 -5156 2463 28 42 0 chr13 8378493 8378782 -93494387 + AluY SINE Alu 2 302 -9 13984 132 23 121 chr13 8378782 8381027 -93492142 + L1P LINE L1 990 2842 -3304 812 87 0 0 chr13 8381027 8381130 -93492039 - AluSq/x SINE Alu -210 103 1 197 159 43 14 chr13 8381365 8381434 -93491735 + (TA)n Simple_repeat Simple_repeat 2 72 0 212 332 75 83 chr13 8381946 8382344 -93490825 + L2 LINE L2 2872 3266 -6 529 169 12 0 chr13 8382820 8382903 -93490266 + AluJ/FLAM SINE Alu 1 84 -228 794 249 98 87 chr13 8382908 8383358 -93489811 + L2 LINE L2 2691 3134 -179 207 0 0 0 chr13 8383358 8383381 -93489788 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2287 102 0 3 chr13 8383383 8383677 -93489492 - AluSq SINE Alu -20 293 1 794 249 98 87 chr13 8383677 8383818 -93489351 + L2 LINE L2 3134 3300 -13 280 293 9 66 chr13 8383896 8384002 -93489167 + MIR SINE MIR 8 107 -155 7853 41 2 2 chr13 8384201 8385167 -93488002 + L1PA5 LINE L1 5191 6153 -1 408 231 192 51 chr13 8385339 8385418 -93487751 - MIR SINE MIR -22 240 173 1857 143 32 0 chr13 8385418 8385698 -93487471 - AluJo SINE Alu -9 303 15 408 231 192 51 chr13 8385698 8385774 -93487395 - MIR SINE MIR -89 173 63 188 319 201 59 chr13 8386827 8387081 -93486088 - L2 LINE L2 0 3272 2983 1972 132 0 23 chr13 8387223 8387526 -93485643 + AluSx SINE Alu 1 296 -16 2109 110 48 0 chr13 8388418 8388709 -93484460 - AluSq SINE Alu -8 305 1 635 280 108 26 chr13 8388756 8388988 -93484181 - MIR SINE MIR -3 259 9 257 271 66 66 chr13 8389932 8390083 -93483086 - L2 LINE L2 -2 3311 3161 558 0 0 0 chr13 8390109 8390171 -93482998 + (TATTG)n Simple_repeat Simple_repeat 5 66 0 1974 154 3 0 chr13 8390171 8390456 -93482713 - AluSx SINE Alu -26 286 1 324 232 111 0 chr13 8390972 8391071 -93482098 - MIR3 SINE MIR -41 167 58 183 80 0 0 chr13 8391474 8391499 -93481670 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2346 81 0 3 chr13 8391722 8392018 -93481151 - AluY SINE Alu -16 295 1 1921 66 49 0 chr13 8393251 8393494 -93479675 + AluY SINE Alu 45 299 -12 513 315 81 20 chr13 8393651 8394024 -93479145 - L2 LINE L2 -184 3088 2680 2027 101 0 7 chr13 8395155 8395431 -93477738 + AluSc SINE Alu 1 274 -35 1329 158 0 0 chr13 8395673 8395876 -93477293 - AluSg/x SINE Alu -39 273 71 890 127 35 0 chr13 8395910 8396052 -93477117 - FRAM SINE Alu -4 172 26 1165 170 106 13 chr13 8396060 8396295 -93476874 + AluJo SINE Alu 46 302 -10 372 240 173 61 chr13 8396923 8397235 -93475934 + L1MEd LINE L1 598 944 -5175 1883 109 30 8 chr13 8397247 8397514 -93475655 + AluSx SINE Alu 2 274 -38 269 218 23 23 chr13 8397515 8397602 -93475567 + L1MC4 LINE L1 6616 6702 -1340 619 265 81 42 chr13 8397617 8397696 -93475473 + L1MEd LINE L1 928 1003 -5263 2298 115 0 6 chr13 8397696 8398009 -93475160 + AluSx SINE Alu 1 311 -1 619 265 81 42 chr13 8398009 8398331 -93474838 + L1MEd LINE L1 1003 1393 -4873 3287 179 31 5 chr13 8398766 8399379 -93473790 - L1MB4 LINE L1 -1 6179 5551 1049 172 45 32 chr13 8399381 8399602 -93473567 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 8399873 8400177 -93472992 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 8400371 8400631 -93472538 - MIR SINE MIR -1 261 1 475 257 29 15 chr13 8401786 8401922 -93471247 + MIR SINE MIR 32 169 -93 31 18 0 53 chr13 8402051 8402076 -93471093 + AT_rich Low_complexity Low_complexity 1 26 -28 1941 149 0 0 chr13 8402076 8402365 -93470804 - AluSx SINE Alu -23 289 1 31 18 0 53 chr13 8402365 8402396 -93470773 + AT_rich Low_complexity Low_complexity 26 54 0 2262 106 0 0 chr13 8402929 8403221 -93469948 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr13 8403394 8403423 -93469746 + AT_rich Low_complexity Low_complexity 1 29 0 2304 92 0 3 chr13 8403799 8404093 -93469076 - AluSx SINE Alu -19 293 1 288 320 86 68 chr13 8404245 8404642 -93468527 + L2 LINE L2 2829 3232 -40 219 109 22 22 chr13 8404798 8404844 -93468325 + A-rich Low_complexity Low_complexity 2 47 0 2359 45 3 58 chr13 8404918 8405231 -93467938 - AluY SINE Alu -15 296 1 198 0 0 0 chr13 8405264 8405286 -93467883 + (A)n Simple_repeat Simple_repeat 1 22 0 2269 100 0 7 chr13 8406286 8406595 -93466574 + AluSx SINE Alu 1 307 -5 827 211 11 16 chr13 8407463 8407653 -93465516 - MER5A DNA MER1_type 0 189 1 4405 228 69 20 chr13 8407827 8409412 -93463757 - L1MDa LINE L1 -4723 1817 17 24 0 0 0 chr13 8409527 8409551 -93463618 + AT_rich Low_complexity Low_complexity 1 24 0 2192 171 22 7 chr13 8410326 8410740 -93462429 + MSTB LTR MaLR 7 426 0 1813 255 35 31 chr13 8411431 8411952 -93461217 + L1M4 LINE L1 27 549 -5993 3481 238 94 29 chr13 8411981 8413462 -93459707 + L1M4 LINE L1 973 2550 -4096 312 346 19 25 chr13 8413462 8413624 -93459545 - L1M4 LINE L1 -1313 4833 4673 1890 223 71 30 chr13 8413624 8414185 -93458984 + MER74B LTR ERVL 29 612 -10 597 268 14 27 chr13 8414198 8414493 -93458676 - L1M4 LINE L1 -1500 4646 4356 599 176 0 0 chr13 8414529 8414620 -93458549 - FRAM SINE Alu -73 103 13 881 158 28 0 chr13 8414868 8415045 -93458124 - MER57B LTR ERV1 0 434 253 6335 162 20 8 chr13 8415045 8415837 -93457332 + L1PA16 LINE L1 3893 4674 -1492 1862 116 16 0 chr13 8415837 8416088 -93457081 + AluSg SINE Alu 44 298 -12 6335 162 20 8 chr13 8416088 8417530 -93455639 + L1PA16 LINE L1 4674 6157 -9 291 132 0 0 chr13 8417534 8417587 -93455582 - ERVL-B1 LTR ERVL -255 5509 5457 189 74 0 0 chr13 8417588 8417615 -93455554 + (CA)n Simple_repeat Simple_repeat 2 28 0 11263 152 19 15 chr13 8417615 8419581 -93453588 - ERVL-B1 LTR ERVL -346 5418 3444 5054 159 48 12 chr13 8419569 8419995 -93453174 - ERVL-B1 LTR ERVL -2965 2799 2390 * 2004 151 110 15 chr13 8419995 8420385 -93452784 + MSTA LTR MaLR 1 427 -1 5054 159 48 12 chr13 8420385 8420887 -93452282 - ERVL-B1 LTR ERVL -3374 2390 1837 6831 212 28 35 chr13 8420917 8421426 -93451743 - ERVL-B1 LTR ERVL -4139 1625 1114 984 171 411 10 chr13 8421426 8421730 -93451439 + MSTB LTR MaLR 1 426 0 6831 212 28 35 chr13 8421730 8422609 -93450560 - ERVL-B1 LTR ERVL -4650 1114 247 2037 129 46 35 chr13 8422609 8422980 -93450189 - THE1C LTR MaLR 0 375 1 6831 212 28 35 chr13 8422980 8423225 -93449944 - ERVL-B1 LTR ERVL -5517 247 2 259 92 0 123 chr13 8423226 8423291 -93449878 - MLT2B1 LTR ERVL 0 515 464 225 0 0 0 chr13 8423291 8423316 -93449853 + (TA)n Simple_repeat Simple_repeat 1 25 0 1235 219 99 56 chr13 8423341 8423806 -93449363 - MLT2B1 LTR ERVL -35 485 1 2488 85 0 0 chr13 8423950 8424257 -93448912 + AluY SINE Alu 1 307 -4 285 264 170 0 chr13 8424362 8424468 -93448701 + MIR SINE MIR 3 126 -136 632 147 0 53 chr13 8424515 8424705 -93448464 + (TA)n Simple_repeat Simple_repeat 1 180 0 2306 105 0 0 chr13 8425911 8426207 -93446962 - AluSx SINE Alu -16 296 1 228 135 0 0 chr13 8426242 8426279 -93446890 + (T)n Simple_repeat Simple_repeat 1 37 0 25 51 0 0 chr13 8426795 8426834 -93446335 + AT_rich Low_complexity Low_complexity 1 39 0 294 382 81 35 chr13 8426909 8427281 -93445888 + L2 LINE L2 2880 3268 -4 2231 116 0 0 chr13 8427517 8427820 -93445349 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr13 8427836 8427864 -93445305 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2139 125 3 0 chr13 8427867 8428155 -93445014 - AluSg SINE Alu -21 289 1 21 57 0 0 chr13 8428374 8428409 -93444760 + AT_rich Low_complexity Low_complexity 1 35 0 372 234 123 58 chr13 8429168 8429339 -93443830 - L2 LINE L2 0 3313 3132 2180 136 0 0 chr13 8429392 8429700 -93443469 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr13 8429776 8429804 -93443365 + AT_rich Low_complexity Low_complexity 1 28 0 726 181 0 0 chr13 8429806 8429933 -93443236 + FRAM SINE Alu 40 166 -10 359 321 82 60 chr13 8430722 8431086 -93442083 + L1ME4a LINE L1 2193 2564 -3582 234 236 121 18 chr13 8431181 8431346 -93441823 + L1ME4a LINE L1 2649 2830 -3316 989 116 9 116 chr13 8431675 8431900 -93441269 + L1MB8 LINE L1 5977 6177 -1 303 309 130 26 chr13 8431906 8432213 -93440956 + L1ME4a LINE L1 4994 5332 -814 330 327 153 14 chr13 8432260 8432483 -93440686 + L1ME4a LINE L1 5392 5645 -2163 702 179 11 11 chr13 8432526 8432705 -93440464 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 505 336 81 45 chr13 8433038 8433482 -93439687 + L1ME4a LINE L1 5624 6083 -38 2304 79 0 3 chr13 8433985 8434277 -93438892 + AluY SINE Alu 2 292 -19 819 178 0 0 chr13 8435035 8435164 -93438005 - FLAM_A SINE Alu -4 129 1 207 162 0 0 chr13 8435169 8435206 -93437963 + T-rich Low_complexity Low_complexity 1 37 0 1810 181 2 48 chr13 8435303 8435702 -93437467 - MLT1B LTR MaLR 0 390 10 394 333 57 18 chr13 8435784 8436348 -93436821 - L1M4 LINE L1 -1309 4837 4252 1487 244 56 19 chr13 8436649 8437076 -93436093 + MER74B LTR ERVL 58 500 -122 598 164 30 94 chr13 8437583 8437669 -93435500 - L1MC5 LINE L1 -48 7913 7823 2522 44 0 7 chr13 8437669 8437965 -93435204 + AluY SINE Alu 1 294 -17 598 164 30 94 chr13 8437965 8438079 -93435090 - L1MC5 LINE L1 -138 7823 7726 214 274 147 20 chr13 8438207 8438309 -93434860 + MIR SINE MIR 19 133 -75 344 353 16 8 chr13 8438458 8438580 -93434589 + MIR SINE MIR 22 144 -118 313 211 64 9 chr13 8438668 8438777 -93434392 + Charlie7 DNA MER1_type 65 179 -2433 333 313 53 27 chr13 8438794 8439166 -93434003 - L1MEd LINE L1 -4869 1250 895 8569 95 0 1 chr13 8439452 8440636 -93432533 + THE1B-int LTR MaLR 398 1580 0 2263 113 73 14 chr13 8440636 8440980 -93432189 + THE1B LTR MaLR 1 364 0 1699 181 0 0 chr13 8440980 8441312 -93431857 + L1PA13 LINE L1 4126 4457 -1689 1765 124 0 16 chr13 8441312 8441569 -93431600 + AluSx SINE Alu 35 287 -25 750 99 9 0 chr13 8441587 8441698 -93431471 + THE1B LTR MaLR 253 364 0 5914 114 9 3 chr13 8441698 8442860 -93430309 + L1PA13 LINE L1 4995 6163 0 1580 202 34 3 chr13 8443370 8443667 -93429502 + AluJo SINE Alu 1 306 -6 226 290 0 0 chr13 8443932 8443994 -93429175 + GA-rich Low_complexity Low_complexity 3 64 0 1520 184 52 66 chr13 8444064 8444609 -93428560 + MER67C LTR ERV1 1 504 -10 22 0 0 0 chr13 8445375 8445397 -93427772 + AT_rich Low_complexity Low_complexity 1 22 0 4350 165 37 26 chr13 8445472 8446731 -93426438 + L1MB4 LINE L1 4909 6176 -4 430 275 53 76 chr13 8446845 8447187 -93425982 + L1ME4a LINE L1 4869 5196 -950 2382 74 0 0 chr13 8447187 8447483 -93425686 - AluY SINE Alu -15 296 1 430 275 53 76 chr13 8447483 8447682 -93425487 + L1ME4a LINE L1 5196 5398 -748 292 327 13 13 chr13 8447872 8448028 -93425141 + L1ME4a LINE L1 5663 5818 -303 2048 106 4 0 chr13 8448344 8448618 -93424551 + AluSc SINE Alu 33 307 -2 304 238 0 38 chr13 8448618 8448687 -93424482 + L1ME4a LINE L1 5973 6040 -81 1689 74 0 52 chr13 8449009 8449239 -93423930 + AluSq SINE Alu 1 218 -95 555 172 125 8 chr13 8449524 8449652 -93423517 - MLT1B LTR MaLR -234 156 14 2245 105 0 0 chr13 8449726 8450021 -93423148 - AluSx SINE Alu -17 295 1 897 168 6 48 chr13 8450928 8451095 -93422074 - FRAM SINE Alu -17 159 1 1038 200 69 87 chr13 8451124 8451291 -93421878 + MLT1C LTR MaLR 7 176 -291 2055 122 0 3 chr13 8451291 8451585 -93421584 + AluSx SINE Alu 1 293 -19 1038 200 69 87 chr13 8451585 8451852 -93421317 + MLT1C LTR MaLR 176 433 -34 363 286 81 11 chr13 8451877 8452062 -93421107 + L2 LINE L2 1771 1968 -1346 204 272 201 41 chr13 8452216 8452484 -93420685 + L2 LINE L2 2341 2651 -663 2222 105 0 16 chr13 8452546 8452850 -93420319 + AluSx SINE Alu 3 301 -11 1656 151 15 48 chr13 8452857 8453189 -93419980 - MLT1A1 LTR MaLR -40 325 5 459 0 0 0 chr13 8453232 8453283 -93419886 + (TG)n Simple_repeat Simple_repeat 1 51 0 2138 132 14 3 chr13 8453283 8453646 -93419523 - L1MA9 LINE L1 -161 6151 5785 1579 265 32 2 chr13 8453892 8454303 -93418866 - MER70B LTR ERVL -152 426 4 1991 161 13 20 chr13 8454316 8454707 -93418462 - MER70B-int LTR ERVL 0 5023 4636 1106 207 33 15 chr13 8455579 8456015 -93417154 - MER70B-int LTR ERVL -1443 3580 3084 * 1364 163 112 14 chr13 8456012 8456307 -93416862 - MER70B-int LTR ERVL -2375 2648 2325 258 383 128 0 chr13 8456317 8456544 -93416625 - L1M3c LINE L1 -5884 257 2 612 278 98 7 chr13 8456885 8457162 -93416007 - L1MC4 LINE L1 -443 7599 7298 1759 179 28 0 chr13 8457171 8457461 -93415708 + AluJb SINE Alu 1 298 -14 319 219 29 0 chr13 8458492 8458597 -93414572 + (TA)n Simple_repeat Simple_repeat 1 108 0 252 0 0 0 chr13 8458632 8458660 -93414509 + (TA)n Simple_repeat Simple_repeat 2 29 0 2485 58 0 16 chr13 8458660 8458971 -93414198 - AluY SINE Alu -5 306 1 189 0 0 0 chr13 8459628 8459649 -93413520 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1578 183 0 21 chr13 8459652 8459942 -93413227 - AluJb SINE Alu -28 284 1 327 207 17 52 chr13 8459948 8460064 -93413105 + Charlie7 DNA MER1_type 2435 2546 -66 2336 62 7 3 chr13 8460105 8460395 -93412774 + AluSq SINE Alu 1 291 -22 327 276 26 79 chr13 8460533 8460685 -93412484 - L2 LINE L2 -7 3306 3163 216 293 17 0 chr13 8461162 8461220 -93411949 + (CG)n Simple_repeat Simple_repeat 2 60 0 2673 48 0 0 chr13 8461406 8461716 -93411453 - AluY SINE Alu 0 311 2 365 274 0 12 chr13 8462250 8462334 -93410835 - MIR SINE MIR -153 109 27 1020 139 13 0 chr13 8462378 8462529 -93410640 - FRAM SINE Alu -24 152 1 358 259 35 26 chr13 8462614 8462730 -93410439 + MIR3 SINE MIR 86 202 -6 2329 102 16 0 chr13 8463264 8463568 -93409601 - AluSc SINE Alu 0 309 1 2231 90 3 0 chr13 8463687 8463976 -93409193 + AluSx SINE Alu 1 290 -22 208 279 47 58 chr13 8464325 8464411 -93408758 - L3b LINE CR1 -98 1485 1401 1841 224 56 18 chr13 8464576 8465023 -93408146 - MLT1D LTR MaLR -21 484 21 323 344 51 6 chr13 8465056 8465213 -93407956 - L3 LINE CR1 -41 1536 1373 215 349 48 0 chr13 8465336 8465419 -93407750 - L2 LINE L2 -4 3268 3182 5286 266 104 20 chr13 8465925 8466075 -93407094 - L2 LINE L2 0 3313 3177 1893 140 90 39 chr13 8466075 8466432 -93406737 + THE1C LTR MaLR 1 375 0 5286 266 104 20 chr13 8466432 8467051 -93406118 - L2 LINE L2 -136 3177 2611 2708 196 70 33 chr13 8467051 8467621 -93405548 + MLT1E LTR MaLR 1 591 -2 5286 266 104 20 chr13 8467621 8468955 -93404214 - L2 LINE L2 -702 2611 1032 4520 141 63 41 chr13 8468961 8469242 -93403927 + L1MCa LINE L1 579 852 -5574 3440 77 18 14 chr13 8469242 8469684 -93403485 - MLT2A1 LTR ERVL 0 444 1 4520 141 63 41 chr13 8469684 8470313 -93402856 + L1MCa LINE L1 852 1509 -4917 274 298 36 12 chr13 8470313 8470397 -93402772 - MIR SINE MIR -171 91 6 201 129 0 0 chr13 8470430 8470461 -93402708 + (CA)n Simple_repeat Simple_repeat 2 32 0 1318 283 97 36 chr13 8470593 8471009 -93402160 + L1MEc LINE L1 1213 1602 -4794 1854 112 71 4 chr13 8471009 8471304 -93401865 + AluSx SINE Alu 1 313 0 1318 283 97 36 chr13 8471304 8471632 -93401537 + L1MEc LINE L1 1602 2003 -4393 3551 166 22 37 chr13 8471705 8472374 -93400795 + MER67B LTR ERV1 1 659 -2 911 97 0 0 chr13 8472384 8472497 -93400672 + AluY SINE Alu 1 113 -198 657 234 27 11 chr13 8472497 8472681 -93400488 + L1MEc LINE L1 2856 3042 -3173 195 184 0 0 chr13 8472681 8472719 -93400450 + (TA)n Simple_repeat Simple_repeat 2 39 0 237 174 0 0 chr13 8472756 8472802 -93400367 + LTR66 LTR ERVL 394 439 -171 * 1899 201 37 5 chr13 8472788 8473159 -93400010 - MLT2D LTR ERVL -40 480 1 3630 212 117 41 chr13 8473159 8474447 -93398722 + L1M3 LINE L1 4004 5406 -760 2210 137 5 67 chr13 8474447 8474833 -93398336 + MLT1A1 LTR MaLR 4 365 0 3630 212 117 41 chr13 8474833 8474966 -93398203 + L1M3 LINE L1 5406 5528 -638 1565 189 31 18 chr13 8474980 8475043 -93398126 + MER45B DNA AcHobo 38 99 -941 2246 99 20 3 chr13 8475043 8475345 -93397824 - AluSq SINE Alu -6 307 1 1565 189 31 18 chr13 8475345 8475567 -93397602 + MER45B DNA AcHobo 99 327 -713 573 128 12 0 chr13 8475567 8475653 -93397516 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 8475653 8475841 -93397328 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 8475843 8475943 -93397226 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 8477257 8477301 -93395868 + A-rich Low_complexity Low_complexity 1 47 0 474 336 94 0 chr13 8477565 8477788 -93395381 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 8477901 8477939 -93395230 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 8478086 8478320 -93394849 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 8478320 8478616 -93394553 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 8478616 8478824 -93394345 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 8478854 8479167 -93394002 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 8479940 8479990 -93393179 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 8480372 8480668 -93392501 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 8481373 8481493 -93391676 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 8481493 8481745 -93391424 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 8481745 8481892 -93391277 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 8482558 8482737 -93390432 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 8482739 8483283 -93389886 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 8485307 8485386 -93387783 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 8486117 8486424 -93386745 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 8486723 8486895 -93386274 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 8487277 8487375 -93385794 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 8488270 8488316 -93384853 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 8490806 8490985 -93382184 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 8490999 8491119 -93382050 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 8491121 8491191 -93381978 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 8491313 8491621 -93381548 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 8492087 8492166 -93381003 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 8492247 8492452 -93380717 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 8492502 8492589 -93380580 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 8493433 8493478 -93379691 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 8495208 8495296 -93377873 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 8497311 8497549 -93375620 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 8498279 8498366 -93374803 - L2 LINE L2 0 3313 3204 25 51 0 0 chr13 8499336 8499375 -93373794 + AT_rich Low_complexity Low_complexity 1 39 0 2383 97 0 0 chr13 8499539 8499838 -93373331 + AluSc SINE Alu 1 299 -10 2137 148 17 14 chr13 8499998 8500355 -93372814 - L1MB7 LINE L1 -9 6175 5818 800 275 174 28 chr13 8500446 8500842 -93372327 - LTR16A1 LTR ERVL -1 456 3 1989 319 59 18 chr13 8500926 8502249 -93370920 - HERV16 LTR ERVL -90 5344 3938 2591 317 37 9 chr13 8502314 8503298 -93369871 - HERV16 LTR ERVL -1926 3838 2828 371 236 47 8 chr13 8503304 8503431 -93369738 - Charlie5 DNA MER1_type -85 2527 2396 1698 309 61 19 chr13 8504264 8504536 -93368633 - HERV16 LTR ERVL -2923 2841 2582 420 139 0 70 chr13 8504536 8504622 -93368547 - MADE1 DNA Mariner 0 80 1 1698 309 61 19 chr13 8504622 8505106 -93368063 - HERV16 LTR ERVL -3182 2582 2053 * 2398 298 115 55 chr13 8505096 8505834 -93367335 - HERV16 LTR ERVL -3184 1812 1119 222 37 0 0 chr13 8505834 8505861 -93367308 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2398 298 115 55 chr13 8505861 8506832 -93366337 - HERV16 LTR ERVL -3877 1119 1 388 243 162 7 chr13 8506832 8506980 -93366189 - LTR16A1 LTR ERVL 0 457 287 769 188 5 124 chr13 8507386 8507520 -93365649 - MER5B DNA MER1_type 0 178 74 2300 107 3 0 chr13 8507520 8507818 -93365351 - AluSq SINE Alu -14 299 1 769 188 5 124 chr13 8507818 8507885 -93365284 - MER5B DNA MER1_type -104 74 1 216 270 135 18 chr13 8507886 8507997 -93365172 + L2 LINE L2 3190 3313 0 2304 94 0 23 chr13 8508283 8508591 -93364578 + AluSq SINE Alu 1 301 -12 823 123 0 72 chr13 8508604 8508742 -93364427 + FLAM_C SINE Alu 1 128 -15 2021 109 51 0 chr13 8509089 8509363 -93363806 - AluSg SINE Alu -22 288 1 2405 62 0 13 chr13 8509759 8510064 -93363105 - AluY SINE Alu -10 301 1 1749 196 0 7 chr13 8512529 8512835 -93360334 - AluJo SINE Alu -8 304 1 2318 116 0 0 chr13 8513358 8513669 -93359500 + AluSx SINE Alu 1 311 -1 2110 135 0 0 chr13 8513674 8513963 -93359206 + AluSx SINE Alu 3 291 -21 516 318 50 0 chr13 8514267 8514446 -93358723 - MIR SINE MIR -13 249 62 2343 95 0 0 chr13 8514778 8515074 -93358095 - AluSx SINE Alu -16 296 1 578 227 198 12 chr13 8515423 8515595 -93357574 + MIR SINE MIR 59 262 0 366 250 159 9 chr13 8515653 8515873 -93357296 - LTR16C LTR ERVL -16 475 223 2133 127 0 0 chr13 8515943 8516234 -93356935 + AluSx SINE Alu 1 291 -21 2035 136 27 0 chr13 8516288 8516589 -93356580 + AluSc SINE Alu 1 309 0 228 135 0 0 chr13 8516639 8516676 -93356493 + (CAT)n Simple_repeat Simple_repeat 2 38 0 319 292 42 0 chr13 8517102 8517198 -93355971 + MER5B DNA MER1_type 2 101 -77 3362 190 20 8 chr13 8517199 8517909 -93355260 - L1 LINE L1 -1120 5026 4309 273 160 0 0 chr13 8517909 8517959 -93355210 + Alu SINE Alu 259 308 0 430 240 33 8 chr13 8517990 8518111 -93355058 + L1MA9 LINE L1 6167 6290 -22 263 163 0 0 chr13 8518159 8518202 -93354967 + MER5B DNA MER1_type 136 178 0 4353 141 15 51 chr13 8518324 8519150 -93354019 + L1MA9 LINE L1 5021 5875 -437 2473 99 0 0 chr13 8519150 8519462 -93353707 + AluSq SINE Alu 1 312 -1 4353 141 15 51 chr13 8519462 8519709 -93353460 + L1MA9 LINE L1 5875 6141 -171 2327 92 0 3 chr13 8519709 8520012 -93353157 + AluSx SINE Alu 1 302 -10 4353 141 15 51 chr13 8520012 8520157 -93353012 + L1MA9 LINE L1 6141 6290 -22 2398 43 0 4 chr13 8520173 8520483 -93352686 + AluY SINE Alu 2 310 0 967 331 30 48 chr13 8521703 8522198 -93350971 + L2 LINE L2 994 1479 -1835 1121 256 59 22 chr13 8522212 8522690 -93350479 + MLT1H LTR MaLR 14 547 -2 222 333 21 10 chr13 8522710 8522806 -93350363 + L2 LINE L2 1493 1589 -1725 662 219 121 47 chr13 8523036 8523251 -93349918 - MIR SINE MIR -27 235 5 1196 283 95 96 chr13 8523265 8523384 -93349785 + L2 LINE L2 1802 1920 -1393 708 217 66 40 chr13 8523384 8523610 -93349559 + MER106A DNA MER1_type 1 232 -4 1196 283 95 96 chr13 8523610 8524378 -93348791 + L2 LINE L2 1920 2687 -626 1024 128 6 6 chr13 8524378 8524558 -93348611 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 189 0 0 0 chr13 8524563 8524584 -93348585 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 1196 283 95 96 chr13 8524584 8525032 -93348137 + L2 LINE L2 2691 3135 -178 1991 139 9 22 chr13 8526631 8526947 -93346222 + AluJo SINE Alu 1 312 0 185 291 73 0 chr13 8527563 8527618 -93345551 - L2 LINE L2 0 3272 3214 198 118 0 0 chr13 8528788 8528822 -93344347 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 318 26 0 0 chr13 8532506 8532545 -93340624 + (TG)n Simple_repeat Simple_repeat 1 39 0 804 260 35 31 chr13 8532625 8532879 -93340290 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 8533113 8533135 -93340034 + (TG)n Simple_repeat Simple_repeat 2 23 0 317 349 128 13 chr13 8533177 8533326 -93339843 + MIR3 SINE MIR 16 181 -27 1842 160 29 29 chr13 8533849 8534193 -93338976 - MER2 DNA MER2_type 0 344 1 423 320 79 57 chr13 8534399 8534627 -93338542 - L2 LINE L2 0 3272 3040 2863 142 43 13 chr13 8535923 8536457 -93336712 - L1MB7 LINE L1 -19 6165 5616 2502 55 3 0 chr13 8537746 8538053 -93335116 - AluY SINE Alu -3 308 1 2064 107 10 0 chr13 8538069 8538358 -93334811 - AluSq SINE Alu -21 292 1 2385 61 0 3 chr13 8538369 8538666 -93334503 - AluY SINE Alu -15 296 1 24 0 0 0 chr13 8538826 8538850 -93334319 + AT_rich Low_complexity Low_complexity 1 24 0 848 173 31 19 chr13 8538882 8538898 -93334271 - FRAM SINE Alu -137 165 151 180 0 0 0 chr13 8538898 8538918 -93334251 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 848 173 31 19 chr13 8538918 8539063 -93334106 - FRAM SINE Alu -151 151 2 363 216 11 0 chr13 8539145 8539233 -93333936 - L1MA4A LINE L1 -26 6277 6189 2960 160 14 10 chr13 8539239 8539821 -93333348 - L1MA4A LINE L1 -183 6120 5537 238 356 113 52 chr13 8539821 8540051 -93333118 - L2 LINE L2 -38 3234 2991 976 294 172 19 chr13 8540280 8540977 -93332192 - L2 LINE L2 -362 2952 2149 412 253 207 5 chr13 8542204 8542402 -93330767 - L1MC4a LINE L1 -1903 5905 5668 513 0 0 0 chr13 8542876 8542933 -93330236 + (CA)n Simple_repeat Simple_repeat 2 58 0 1726 181 0 0 chr13 8542948 8543219 -93329950 - AluJo SINE Alu -21 291 21 200 35 35 0 chr13 8544478 8544507 -93328662 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3486 169 100 43 chr13 8544661 8544731 -93328438 - L1MB8 LINE L1 0 6178 6113 2340 108 3 0 chr13 8544731 8545028 -93328141 + AluSq SINE Alu 1 298 -15 3486 169 100 43 chr13 8545028 8545861 -93327308 - L1MB8 LINE L1 -65 6113 5225 3728 109 51 149 chr13 8545861 8546147 -93327022 - Tigger3(Golem) DNA MER2_type 0 3029 2717 1425 194 14 25 chr13 8546147 8546431 -93326738 + AluJo SINE Alu 1 281 -31 3728 109 51 149 chr13 8546431 8546836 -93326333 - Tigger3(Golem) DNA MER2_type -312 2717 2274 505 149 11 11 chr13 8546836 8546923 -93326246 + AluJ/FLAM SINE Alu 1 87 -225 3728 109 51 149 chr13 8546923 8547537 -93325632 - Tigger3(Golem) DNA MER2_type -755 2274 1 1205 196 237 7 chr13 8547541 8547979 -93325190 - L1MB8 LINE L1 -937 5209 4671 21 0 0 0 chr13 8548161 8548182 -93324987 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 8548282 8548305 -93324864 + AT_rich Low_complexity Low_complexity 1 23 0 402 291 102 20 chr13 8548711 8548965 -93324204 - L1MC4a LINE L1 -439 5682 5408 2398 92 0 0 chr13 8549050 8549356 -93323813 - AluY SINE Alu -5 306 1 461 322 115 29 chr13 8549527 8550005 -93323164 - L1MC4a LINE L1 -1087 5059 4541 422 189 75 0 chr13 8550137 8550243 -93322926 - MER53 DNA DNA -75 114 1 2259 79 7 0 chr13 8550499 8550777 -93322392 - AluSc SINE Alu -20 289 10 214 278 12 33 chr13 8550994 8551089 -93322080 + MIR SINE MIR 49 144 -64 23 0 0 0 chr13 8551179 8551202 -93321967 + AT_rich Low_complexity Low_complexity 1 23 0 552 316 130 3 chr13 8552531 8552816 -93320353 + L3 LINE CR1 1251 1571 -6 256 297 0 62 chr13 8553081 8553209 -93319960 - L2 LINE L2 -829 2485 2366 239 308 15 0 chr13 8553311 8553376 -93319793 + L1MC4 LINE L1 6934 6999 -1043 1574 187 59 9 chr13 8553387 8553708 -93319461 - MER2 DNA MER2_type 0 345 9 1250 293 74 31 chr13 8553785 8554526 -93318643 + L1MC4 LINE L1 7109 7881 -161 258 32 0 0 chr13 8554594 8554625 -93318544 + (TG)n Simple_repeat Simple_repeat 2 32 0 526 224 28 47 chr13 8555101 8555326 -93317843 - L1M4 LINE L1 -681 5497 5275 1039 168 5 10 chr13 8555424 8555627 -93317542 + L1PB1 LINE L1 3 204 -6659 * 10058 154 40 44 chr13 8555618 8557953 -93315216 + L1PB1 LINE L1 1113 3455 -3412 2181 104 0 3 chr13 8557953 8558240 -93314929 + AluSc SINE Alu 1 286 -23 2257 99 7 3 chr13 8558243 8558547 -93314622 + AluSg SINE Alu 1 305 -5 10058 154 40 44 chr13 8558547 8559585 -93313584 + L1PB1 LINE L1 3457 4497 -2370 2087 112 25 0 chr13 8559585 8559862 -93313307 + AluSq SINE Alu 3 286 -27 262 0 0 0 chr13 8559862 8559891 -93313278 + (CAAAA)n Simple_repeat Simple_repeat 2 120 0 10058 154 40 44 chr13 8559891 8560521 -93312648 + L1PB1 LINE L1 4497 5128 -1739 243 88 0 0 chr13 8560521 8560555 -93312614 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 10058 154 40 44 chr13 8560555 8561913 -93311256 + L1PB1 LINE L1 5128 6505 -362 459 18 0 0 chr13 8561925 8561980 -93311189 - AluSg/x SINE Alu -43 266 212 2511 104 6 6 chr13 8561987 8562352 -93310817 + L1PB1 LINE L1 6501 6865 -2 401 251 134 40 chr13 8562487 8562590 -93310579 - L1M4 LINE L1 -901 5245 5153 2206 104 0 3 chr13 8562590 8562887 -93310282 - AluSg SINE Alu -14 296 1 401 251 134 40 chr13 8562887 8563058 -93310111 - L1M4 LINE L1 -993 5153 4945 780 197 45 155 chr13 8563064 8563400 -93309769 - L1M4 LINE L1 -1379 4767 4396 1630 145 80 0 chr13 8563400 8563662 -93309507 - AluSx SINE Alu -27 285 3 780 197 45 155 chr13 8563662 8563677 -93309492 - L1M4 LINE L1 -1750 4396 4381 2361 90 7 0 chr13 8563677 8563977 -93309192 - AluSc SINE Alu -7 302 1 780 197 45 155 chr13 8563977 8564178 -93308991 - L1M4 LINE L1 -1765 4381 4275 2299 81 0 0 chr13 8564179 8564474 -93308695 - AluY SINE Alu -16 295 1 210 37 0 0 chr13 8565427 8565454 -93307715 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2123 112 7 14 chr13 8565459 8565754 -93307415 + AluSg SINE Alu 1 293 -17 1473 138 53 0 chr13 8565760 8565985 -93307184 + Tigger3(Golem) DNA MER2_type 2791 3027 -2 279 272 103 70 chr13 8566110 8566411 -93306758 - HAL1 LINE L1 -4 2503 2193 797 256 30 0 chr13 8566419 8566618 -93306551 - HAL1 LINE L1 -677 1830 1626 477 176 33 0 chr13 8566898 8566989 -93306180 + MER5A DNA MER1_type 9 102 -87 612 308 26 51 chr13 8567059 8567332 -93305837 - MLT1J LTR MaLR -235 276 11 696 223 30 72 chr13 8567332 8567637 -93305532 - HAL1 LINE L1 -899 1608 1317 312 93 0 0 chr13 8567641 8567684 -93305485 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 299 241 90 24 chr13 8567732 8567898 -93305271 - HAL1 LINE L1 -1341 1166 990 279 27 41 178 chr13 8567909 8567940 -93305229 - L1MA8 LINE L1 -6 6285 6268 2025 117 13 10 chr13 8567940 8568240 -93304929 + AluSx SINE Alu 1 301 -11 279 27 41 178 chr13 8568240 8568281 -93304888 - L1MA8 LINE L1 -23 6268 6223 4048 154 70 14 chr13 8568305 8568748 -93304421 - L1MA8 LINE L1 -6 6294 5877 915 193 6 0 chr13 8568748 8568909 -93304260 - AluJo SINE Alu -4 298 137 4048 154 70 14 chr13 8568909 8569352 -93303817 - L1MA8 LINE L1 -423 5877 5322 2150 112 10 0 chr13 8569357 8569660 -93303509 - AluSc SINE Alu -3 306 1 353 296 112 34 chr13 8569713 8569919 -93303250 - HAL1 LINE L1 -1608 899 678 686 254 107 43 chr13 8569943 8570383 -93302786 - MER110A LTR ERV1 0 468 1 6620 257 102 69 chr13 8570525 8572389 -93300780 - MER110A-int LTR ERV1 -74 4573 2580 1239 171 42 114 chr13 8572389 8572792 -93300377 - MLT1A2 LTR MaLR 0 374 1 6620 257 102 69 chr13 8572792 8573767 -93299402 - MER110A-int LTR ERV1 -2067 2580 1639 1151 170 22 31 chr13 8573896 8574125 -93299044 - Tigger3(Golem) DNA MER2_type 0 3038 2812 280 277 15 0 chr13 8574100 8574165 -93299004 - Tigger3(Golem) DNA MER2_type -2963 66 1 * 255 272 0 87 chr13 8574166 8574269 -93298900 - MER110A-int LTR ERV1 -3170 1477 1384 307 301 43 21 chr13 8574328 8574421 -93298748 - MER110A-int LTR ERV1 -3295 1352 1258 768 217 133 6 chr13 8574449 8574615 -93298554 - MER58C DNA MER1_type 0 215 29 358 191 0 29 chr13 8574796 8574864 -93298305 - Tigger7 DNA MER2_type 0 2487 2422 1458 167 15 15 chr13 8574894 8575158 -93298011 - Tigger7 DNA MER2_type -2223 264 1 305 296 111 0 chr13 8575169 8575304 -93297865 - MER110A-int LTR ERV1 -3969 678 529 * 381 286 8 25 chr13 8575284 8575403 -93297766 - MER89-int LTR ERV1 -4124 2677 2561 261 333 35 0 chr13 8575624 8575711 -93297458 - MER89-int LTR ERV1 -4432 215 126 189 0 0 0 chr13 8575831 8575852 -93297317 + (T)n Simple_repeat Simple_repeat 1 21 0 392 339 32 32 chr13 8575952 8576321 -93296848 - MER89-int LTR ERV1 -4441 2360 1992 254 327 71 0 chr13 8577219 8577332 -93295837 - L2 LINE L2 -604 2710 2590 542 153 119 42 chr13 8577489 8577607 -93295562 - AluJo SINE Alu -172 130 4 575 230 52 110 chr13 8577783 8577923 -93295246 - L1MEc LINE L1 -3143 3072 2926 1635 116 8 27 chr13 8577923 8578181 -93294988 - AluSx SINE Alu -16 296 44 575 230 52 110 chr13 8578181 8578422 -93294747 - L1MEc LINE L1 -3289 2926 2713 295 236 9 27 chr13 8578467 8578577 -93294592 - L1MEc LINE L1 -3767 2448 2341 2176 112 0 7 chr13 8578600 8578905 -93294264 + AluSg1 SINE Alu 1 303 -6 324 222 204 57 chr13 8578997 8579173 -93293996 - L1MEc LINE L1 -4164 2232 2031 1483 167 3 97 chr13 8579255 8579585 -93293584 - AluJo SINE Alu -3 299 1 806 286 80 36 chr13 8579683 8580407 -93292762 - L1MEc LINE L1 -4616 1780 1025 2345 102 3 0 chr13 8581240 8581545 -93291624 - AluSx SINE Alu -6 306 1 1593 200 58 90 chr13 8581777 8582277 -93290892 + MLT1D LTR MaLR 22 505 0 806 227 62 0 chr13 8582737 8582931 -93290238 - MER3 DNA MER1_type -1 208 3 458 279 192 0 chr13 8583021 8583193 -93289976 + MIR SINE MIR 51 255 -7 414 329 37 0 chr13 8583300 8583464 -93289705 + L2 LINE L2 1728 1897 -1417 677 273 129 5 chr13 8583490 8583699 -93289470 + MIR SINE MIR 1 235 -27 2474 71 0 0 chr13 8583759 8584055 -93289114 - AluY SINE Alu -15 296 1 540 362 21 11 chr13 8584080 8584362 -93288807 + L2 LINE L2 1994 2278 -1036 1147 192 19 41 chr13 8584362 8584391 -93288778 - L1MB3 LINE L1 -24 6159 6131 1788 100 117 18 chr13 8584391 8584672 -93288497 - AluSg SINE Alu -1 309 1 1147 192 19 41 chr13 8584672 8584908 -93288261 - L1MB3 LINE L1 -52 6131 5900 2220 124 20 13 chr13 8584944 8585394 -93287775 - MER1A DNA MER1_type -2 527 1 225 274 16 0 chr13 8585902 8585964 -93287205 + CT-rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr13 8585964 8585988 -93287181 + AT_rich Low_complexity Low_complexity 1 24 0 501 300 125 82 chr13 8585997 8586580 -93286589 - MLT1L LTR MaLR -2 613 6 5298 72 0 27 chr13 8586626 8587333 -93285836 + LTR12 LTR ERV1 1 688 0 196 297 50 40 chr13 8587741 8587842 -93285327 + L2 LINE L2 3175 3276 -37 235 270 165 9 chr13 8588196 8588311 -93284858 - MIR SINE MIR -30 232 100 185 65 32 0 chr13 8590030 8590061 -93283108 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 226 158 8 chr13 8590236 8590369 -93282800 + MIR SINE MIR 2 154 -108 4318 156 228 42 chr13 8590419 8590682 -93282487 + L1MB3 LINE L1 21 234 -6150 1853 161 0 3 chr13 8590682 8590967 -93282202 + AluJb SINE Alu 1 284 -28 4318 156 228 42 chr13 8590967 8591828 -93281341 + L1MB3 LINE L1 234 1355 -5029 * 9340 213 55 34 chr13 8591820 8593791 -93279378 + L1MB3 LINE L1 2615 4543 -1876 2277 108 3 3 chr13 8593791 8594096 -93279073 + AluSq SINE Alu 1 305 -8 9340 213 55 34 chr13 8594096 8594723 -93278446 + L1MB3 LINE L1 4543 5155 -1264 1739 164 0 46 chr13 8594723 8595046 -93278123 + AluJo SINE Alu 1 308 -4 9340 213 55 34 chr13 8595046 8596171 -93276998 + L1MB3 LINE L1 5155 6418 -1 208 254 8 8 chr13 8596353 8596483 -93276686 + (TA)n Simple_repeat Simple_repeat 1 130 0 1169 140 68 162 chr13 8597735 8598148 -93275021 - MLT1A2 LTR MaLR 0 374 1 278 317 26 37 chr13 8598458 8598641 -93274528 - L1ME LINE L1 -482 5682 5499 224 240 20 0 chr13 8599711 8599761 -93273408 + L2 LINE L2 3225 3275 -38 430 324 77 12 chr13 8600049 8600296 -93272873 - MER90 LTR ERV1 -18 557 295 1090 284 66 58 chr13 8600807 8601380 -93271789 - MER110-int LTR ERV1 -1337 3310 2733 28 61 0 0 chr13 8601830 8601879 -93271290 + AT_rich Low_complexity Low_complexity 1 49 0 2170 125 0 0 chr13 8602141 8602445 -93270724 + AluSx SINE Alu 3 306 -6 27 62 0 0 chr13 8602473 8602521 -93270648 + AT_rich Low_complexity Low_complexity 1 48 0 609 259 52 42 chr13 8603157 8603443 -93269726 - HAL1 LINE L1 -974 1533 1245 598 310 51 16 chr13 8603562 8603817 -93269352 - HAL1 LINE L1 -2240 267 4 24 0 0 0 chr13 8603955 8603979 -93269190 + AT_rich Low_complexity Low_complexity 1 24 0 2284 102 0 3 chr13 8604085 8604399 -93268770 - AluSq SINE Alu 0 313 1 242 346 0 12 chr13 8604492 8604573 -93268596 + L2 LINE L2 2888 2967 -305 5779 168 90 33 chr13 8604635 8604805 -93268364 - L1MA3 LINE L1 -7 6298 6139 1964 136 17 0 chr13 8604805 8605100 -93268069 - AluSx SINE Alu -12 300 1 5779 168 90 33 chr13 8605100 8606836 -93266333 - L1MA3 LINE L1 -166 6139 4228 1888 107 0 0 chr13 8606836 8607078 -93266091 + AluSx SINE Alu 38 279 -33 5779 168 90 33 chr13 8607078 8607378 -93265791 - L1MA3 LINE L1 -2077 4228 3947 1005 154 35 0 chr13 8607497 8607666 -93265503 + Tigger4(Zombi) DNA MER2_type 5 179 -2552 * 2769 109 32 32 chr13 8607664 8607738 -93265431 + Tigger4(Zombi) DNA MER2_type 2265 2338 -393 2062 141 0 0 chr13 8607738 8608036 -93265133 - AluSq SINE Alu -15 298 1 2769 109 32 32 chr13 8608036 8608428 -93264741 + Tigger4(Zombi) DNA MER2_type 2337 2731 0 27 73 0 0 chr13 8609292 8609347 -93263822 + AT_rich Low_complexity Low_complexity 1 55 0 419 359 138 26 chr13 8609385 8609995 -93263174 + L2 LINE L2 1341 2018 -1296 370 310 139 66 chr13 8609997 8610500 -93262669 + L2 LINE L2 2171 2710 -604 306 0 0 0 chr13 8610517 8610551 -93262618 + (CAA)n Simple_repeat Simple_repeat 2 35 0 363 78 0 0 chr13 8610709 8610760 -93262409 + (CA)n Simple_repeat Simple_repeat 2 52 0 824 229 19 33 chr13 8610769 8610983 -93262186 + Charlie1 DNA MER1_type 10 220 -2541 553 189 53 8 chr13 8610979 8611111 -93262058 + Charlie1 DNA MER1_type 2622 2759 -2 * 2627 36 0 3 chr13 8611147 8611450 -93261719 - AluY SINE Alu -9 302 1 365 255 229 38 chr13 8611520 8611677 -93261492 + L2 LINE L2 3124 3310 -3 511 339 38 6 chr13 8611867 8612050 -93261119 + MIR3 SINE MIR 15 203 -5 28 86 0 0 chr13 8612079 8612149 -93261020 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr13 8612549 8612573 -93260596 + AT_rich Low_complexity Low_complexity 1 24 0 558 217 159 16 chr13 8613376 8613565 -93259604 + L1ME3A LINE L1 5945 6160 -10 1188 243 122 21 chr13 8613670 8614196 -93258973 - L1M4 LINE L1 -945 5201 4623 341 57 0 19 chr13 8614292 8614345 -93258824 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr13 8614345 8614370 -93258799 + AT_rich Low_complexity Low_complexity 1 25 0 1096 256 83 2 chr13 8614378 8614789 -93258380 - L1M4 LINE L1 -1843 4303 3860 518 196 26 26 chr13 8614782 8614935 -93258234 - L1M4 LINE L1 -3206 2940 2788 * 493 237 7 40 chr13 8614933 8615085 -93258084 + L1MC5 LINE L1 7696 7842 -119 * 2301 105 0 0 chr13 8615727 8616021 -93257148 - AluSg SINE Alu -16 294 1 24 0 0 0 chr13 8616300 8616324 -93256845 + AT_rich Low_complexity Low_complexity 1 24 0 2239 81 21 0 chr13 8616525 8616809 -93256360 - AluSc SINE Alu -19 290 1 526 229 0 18 chr13 8617008 8617117 -93256052 + MIR SINE MIR 38 144 -118 233 189 0 0 chr13 8617117 8617154 -93256015 + L2 LINE L2 3220 3256 -16 1685 175 0 36 chr13 8617388 8617719 -93255450 - MLT1B LTR MaLR -2 388 70 * 4010 108 107 153 chr13 8617713 8618488 -93254681 - Tigger3b DNA MER2_type -1797 1232 423 2910 131 31 6 chr13 8618488 8618969 -93254200 - L1PA16 LINE L1 0 6166 5674 4010 108 107 153 chr13 8618969 8619074 -93254095 - Tigger3b DNA MER2_type -2606 423 315 1676 138 71 25 chr13 8619074 8619357 -93253812 + AluSx SINE Alu 1 296 -16 4010 108 107 153 chr13 8619357 8619779 -93253390 - Tigger3b DNA MER2_type -2714 315 1 502 132 13 0 chr13 8619779 8619855 -93253314 - MLT1B LTR MaLR -313 77 1 2137 113 3 7 chr13 8619978 8620279 -93252890 - AluSx SINE Alu -12 300 1 288 328 17 17 chr13 8620432 8620548 -93252621 - L2 LINE L2 0 3272 3157 655 303 29 29 chr13 8620657 8620901 -93252268 + MIR SINE MIR 10 253 -9 21 0 0 0 chr13 8621767 8621788 -93251381 + AT_rich Low_complexity Low_complexity 1 21 0 4008 174 38 38 chr13 8622088 8622896 -93250273 + L1MB4 LINE L1 5200 6012 -168 1713 120 59 115 chr13 8622896 8623253 -93249916 + MER1B DNA MER1_type 1 337 0 4008 174 38 38 chr13 8623253 8623423 -93249746 + L1MB4 LINE L1 6012 6180 0 21 57 0 0 chr13 8624053 8624088 -93249081 + AT_rich Low_complexity Low_complexity 1 35 0 259 285 57 55 chr13 8624196 8624327 -93248842 + MIR SINE MIR 51 183 -65 2063 141 20 3 chr13 8624453 8624794 -93248375 + MER7A DNA MER2_type 2 346 0 30 27 0 0 chr13 8625243 8625280 -93247889 + AT_rich Low_complexity Low_complexity 1 37 0 38 51 0 0 chr13 8626424 8626483 -93246686 + AT_rich Low_complexity Low_complexity 1 59 0 2399 77 0 3 chr13 8626522 8626832 -93246337 - AluY SINE Alu -2 309 1 24 53 0 0 chr13 8628509 8628547 -93244622 + AT_rich Low_complexity Low_complexity 1 38 0 2180 105 33 18 chr13 8628794 8629126 -93244043 + MER1B DNA MER1_type 1 337 0 2272 102 0 3 chr13 8629650 8629954 -93243215 + AluSg1 SINE Alu 1 303 -6 812 210 17 17 chr13 8630432 8630608 -93242561 + MER97c DNA MER1_type? 2 177 -913 2092 168 22 30 chr13 8631927 8632333 -93240836 - MLT2D LTR ERVL -8 406 4 2326 76 20 13 chr13 8632336 8632638 -93240531 + AluY SINE Alu 1 304 -7 1945 126 3 13 chr13 8632846 8633148 -93240021 + L1MB3 LINE L1 5533 5831 -352 1362 156 15 0 chr13 8633148 8633353 -93239816 + AluJo SINE Alu 86 293 -19 1683 96 123 15 chr13 8633373 8633697 -93239472 + L1MB3 LINE L1 5821 6179 -4 2186 134 0 3 chr13 8634024 8634331 -93238838 - AluSx SINE Alu -6 306 1 830 161 0 0 chr13 8634495 8634613 -93238556 + FLAM_C SINE Alu 7 124 -19 290 279 74 49 chr13 8634907 8635029 -93238140 + L2 LINE L2 3147 3271 -1 2099 168 6 6 chr13 8635654 8636017 -93237152 - MER47A DNA MER2_type -2 364 2 895 135 0 0 chr13 8636071 8636245 -93236924 - FLAM_C SINE Alu 0 174 1 2848 178 23 48 chr13 8636465 8636527 -93236642 - MLT2B3 LTR ERVL 0 554 492 494 70 14 0 chr13 8636527 8636598 -93236571 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 2848 178 23 48 chr13 8636598 8637103 -93236066 - MLT2B3 LTR ERVL -62 492 1 21 0 0 0 chr13 8637309 8637330 -93235839 + AT_rich Low_complexity Low_complexity 1 21 0 2198 82 0 24 chr13 8637370 8637661 -93235508 + AluY SINE Alu 16 299 -12 763 167 0 53 chr13 8637835 8637985 -93235184 - FLAM_C SINE Alu -1 142 1 235 309 21 53 chr13 8638386 8638480 -93234689 - MIR SINE MIR -76 132 42 522 230 86 89 chr13 8638480 8638737 -93234432 - MER112 DNA MER1_type 0 260 5 26 0 0 0 chr13 8640875 8640901 -93232268 + AT_rich Low_complexity Low_complexity 1 26 0 331 191 119 0 chr13 8641770 8641854 -93231315 + MIR SINE MIR 52 145 -117 385 331 8 16 chr13 8641952 8642073 -93231096 + L2 LINE L2 3194 3313 0 423 358 111 16 chr13 8642517 8642707 -93230462 + L2 LINE L2 2553 2760 -554 550 207 21 14 chr13 8642772 8642917 -93230252 - MER104 DNA Tc2 -32 148 3 594 251 72 32 chr13 8643119 8643398 -93229771 - L1M4 LINE L1 -2225 3921 3632 1211 143 4 78 chr13 8643464 8643694 -93229475 + AluJb SINE Alu 1 213 -99 2032 136 0 3 chr13 8644145 8644439 -93228730 - AluSx SINE Alu -19 293 1 1512 170 50 40 chr13 8644439 8644739 -93228430 - AluJb SINE Alu -9 303 1 290 348 0 0 chr13 8644944 8645033 -93228136 - L2 LINE L2 -568 2746 2658 228 213 11 96 chr13 8645578 8645672 -93227497 + MIR SINE MIR 66 151 -57 215 211 28 28 chr13 8646004 8646075 -93227094 + CT-rich Low_complexity Low_complexity 4 74 0 192 357 85 39 chr13 8648343 8648472 -93224697 - L2 LINE L2 -6 3266 3132 328 313 48 54 chr13 8648524 8648671 -93224498 + MIR3 SINE MIR 55 200 -8 1807 166 7 7 chr13 8649413 8649721 -93223448 + AluJb SINE Alu 3 310 -2 1166 237 177 28 chr13 8649737 8650319 -93222850 - HAL1b LINE L1 -76 1272 604 947 278 130 33 chr13 8650445 8651548 -93221621 - HAL1 LINE L1 -632 1875 586 434 311 90 0 chr13 8651676 8651843 -93221326 + L2 LINE L2 2946 3127 -186 336 164 44 0 chr13 8652174 8652264 -93220905 + L1MD3 LINE L1 7725 7992 -3 181 325 0 0 chr13 8652889 8652929 -93220240 - L2 LINE L2 -95 3177 3138 2194 108 10 0 chr13 8653122 8653418 -93219751 - AluSx SINE Alu -13 299 1 2209 124 0 0 chr13 8653674 8653981 -93219188 + AluSx SINE Alu 1 307 -5 777 184 0 0 chr13 8655239 8655364 -93217805 - FLAM_A SINE Alu -8 125 1 188 300 0 0 chr13 8656017 8656067 -93217102 - L2 LINE L2 -6 3266 3217 2239 109 0 3 chr13 8656283 8656585 -93216584 - AluSg SINE Alu -9 301 1 24 0 0 0 chr13 8656834 8656858 -93216311 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 0 0 chr13 8657265 8657322 -93215847 + T-rich Low_complexity Low_complexity 1 57 0 442 308 33 0 chr13 8658377 8658497 -93214672 - L2 LINE L2 -1 3312 3189 1171 128 30 134 chr13 8659165 8659463 -93213706 + AluYb8 SINE Alu 38 304 -14 22 35 0 0 chr13 8660822 8660851 -93212318 + AT_rich Low_complexity Low_complexity 1 29 0 247 257 14 0 chr13 8662011 8662081 -93211088 + CT-rich Low_complexity Low_complexity 2 72 0 2193 101 28 0 chr13 8662653 8662939 -93210230 + AluSc SINE Alu 1 294 -15 323 336 39 0 chr13 8663167 8663295 -93209874 + MER5A DNA MER1_type 57 189 0 809 258 47 13 chr13 8663411 8663644 -93209525 - MIR SINE MIR 0 262 22 536 231 142 35 chr13 8663700 8663869 -93209300 + MER3 DNA MER1_type 1 187 -22 497 273 145 18 chr13 8665547 8665774 -93207395 + MIR SINE MIR 1 256 -6 343 268 255 6 chr13 8665778 8665935 -93207234 + MIR SINE MIR 1 196 -66 243 333 83 0 chr13 8665965 8666061 -93207108 - MIR SINE MIR -133 129 26 431 205 4 19 chr13 8666999 8667239 -93205930 + AluJo SINE Alu 1 297 -15 2194 117 10 0 chr13 8669610 8669919 -93203250 - AluSx SINE Alu 0 312 1 252 331 91 34 chr13 8670141 8670316 -93202853 + L2 LINE L2 2110 2294 -1020 306 260 82 34 chr13 8670335 8670481 -93202688 + L2 LINE L2 3073 3225 -88 631 279 205 52 chr13 8670497 8671269 -93201900 + L2 LINE L2 2156 3126 -187 2333 101 0 0 chr13 8671269 8671565 -93201604 + AluSx SINE Alu 1 296 -16 631 279 205 52 chr13 8671565 8671788 -93201381 + L2 LINE L2 3126 3313 0 269 239 42 0 chr13 8671788 8671859 -93201310 + L2 LINE L2 2301 2374 -940 502 223 7 0 chr13 8671873 8672012 -93201157 - AluJb SINE Alu 0 312 173 331 321 3 20 chr13 8672030 8672252 -93200917 + C-rich Low_complexity Low_complexity 1 218 0 1753 118 8 0 chr13 8672536 8672782 -93200387 - AluSx SINE Alu -64 248 1 858 129 0 0 chr13 8673017 8673133 -93200036 + FLAM_C SINE Alu 1 116 -17 306 0 0 0 chr13 8673135 8673169 -93200000 + (CA)n Simple_repeat Simple_repeat 2 35 0 1787 161 0 24 chr13 8673617 8673909 -93199260 - AluJo SINE Alu -26 286 2 436 308 86 69 chr13 8674340 8674608 -93198561 - L2 LINE L2 0 3313 3032 636 65 13 0 chr13 8674608 8674685 -93198484 - MADE1 DNA Mariner 0 80 3 436 308 86 69 chr13 8674685 8674894 -93198275 - L2 LINE L2 -281 3032 2828 666 263 82 73 chr13 8675133 8675707 -93197462 + L2 LINE L2 2621 3184 -129 187 279 221 19 chr13 8675755 8675859 -93197310 + MIR SINE MIR 28 152 -110 497 222 152 41 chr13 8675971 8676142 -93197027 - MIR SINE MIR -42 220 31 530 353 27 20 chr13 8676835 8677130 -93196039 + LTR16C LTR ERVL 193 489 -2 985 230 59 0 chr13 8677450 8677689 -93195480 + MERVL LTR ERVL 2427 2679 -2806 2835 206 180 9 chr13 8677697 8678474 -93194695 + L1M4c LINE L1 27 936 -5448 1250 115 6 0 chr13 8678474 8678648 -93194521 + AluSc SINE Alu 132 306 -3 776 211 66 9 chr13 8678655 8678868 -93194301 + L1M4c LINE L1 923 1147 -5237 * 1864 190 37 19 chr13 8678867 8679455 -93193714 + L1M4c LINE L1 2121 2716 -3666 2272 219 30 52 chr13 8679491 8680087 -93193082 + L1M4c LINE L1 4057 4636 -1746 2153 139 0 0 chr13 8680087 8680388 -93192781 + AluSx SINE Alu 1 301 -11 2272 219 30 52 chr13 8680388 8680500 -93192669 + L1M4c LINE L1 4636 4749 -1633 1160 203 61 12 chr13 8680593 8680839 -93192330 - AluJo SINE Alu -10 302 45 279 54 0 0 chr13 8680839 8680876 -93192293 + (TTA)n Simple_repeat Simple_repeat 1 37 0 366 194 0 0 chr13 8680876 8680948 -93192221 - AluSp/q SINE Alu 0 303 232 315 83 0 0 chr13 8680953 8681001 -93192168 - AluY SINE Alu 0 302 255 1702 67 0 5 chr13 8681001 8681210 -93191959 - AluY SINE Alu -103 208 1 1810 125 0 0 chr13 8681210 8681449 -93191720 - AluSx SINE Alu -72 240 1 361 239 110 31 chr13 8681451 8681614 -93191555 - L1MEc LINE L1 -5105 1291 1116 2228 293 74 22 chr13 8681630 8681691 -93191478 - L1MEc LINE L1 -5380 1016 960 14954 130 42 26 chr13 8681691 8683624 -93189545 + Tigger1 DNA MER2_type 1 1902 -516 2424 77 3 7 chr13 8683624 8683923 -93189246 - AluSx SINE Alu -12 300 3 14954 130 42 26 chr13 8683923 8684248 -93188921 + Tigger1 DNA MER2_type 1902 2301 -117 1536 165 16 0 chr13 8684248 8684496 -93188673 - AluJo SINE Alu -17 295 44 14954 130 42 26 chr13 8684496 8684616 -93188553 + Tigger1 DNA MER2_type 2301 2418 0 2228 293 74 22 chr13 8684616 8685486 -93187683 - L1MEc LINE L1 -5436 960 37 2474 68 0 13 chr13 8686166 8686473 -93186696 - AluSg1 SINE Alu -6 303 1 886 173 32 16 chr13 8686667 8686852 -93186317 - MER53 DNA DNA 0 189 2 390 129 0 0 chr13 8687965 8688027 -93185142 + (T)n Simple_repeat Simple_repeat 1 62 0 234 225 0 56 chr13 8688730 8688801 -93184368 + MIR3 SINE MIR 95 161 -47 187 314 14 14 chr13 8689136 8689206 -93183963 + L2 LINE L2 3184 3253 -19 379 303 73 6 chr13 8689277 8689442 -93183727 - MIR SINE MIR -71 191 16 259 257 46 46 chr13 8689545 8689654 -93183515 + MLT1L LTR MaLR 495 603 -12 247 286 18 0 chr13 8690881 8690937 -93182232 - L2 LINE L2 -18 3254 3198 308 224 153 10 chr13 8691502 8691600 -93181569 - MER5A DNA MER1_type -59 130 19 335 289 91 25 chr13 8691724 8691845 -93181324 + MIR3 SINE MIR 41 169 -39 576 256 58 0 chr13 8691923 8692082 -93181087 + FLAM_A SINE Alu 4 169 0 7642 205 28 23 chr13 8692084 8694213 -93178956 + L1M1 LINE L1 3071 5211 -2354 958 179 0 0 chr13 8694217 8694385 -93178784 + L1M1 LINE L1 5533 5700 -1865 * 4305 190 3 23 chr13 8694358 8695214 -93177955 + L1P LINE L1 4707 5545 -2020 266 286 59 59 chr13 8695528 8695647 -93177522 - MER5A DNA MER1_type -50 139 21 339 316 76 13 chr13 8695751 8695909 -93177260 + MIR3 SINE MIR 34 201 -7 402 224 147 39 chr13 8696161 8696317 -93176852 + MER5B DNA MER1_type 6 178 0 281 296 96 30 chr13 8696540 8696675 -93176494 + MIR SINE MIR 63 206 -56 3080 224 73 24 chr13 8696744 8698206 -93174963 + L1ME1 LINE L1 5967 7582 -3 695 342 121 35 chr13 8698208 8699225 -93173944 - L2 LINE L2 -13 3259 2148 6279 233 21 17 chr13 8699288 8701738 -93171431 + L1MA5A LINE L1 4 2615 -4174 * 8600 129 21 21 chr13 8701737 8703369 -93169800 + L1MA5A LINE L1 4505 6139 -800 1898 129 30 0 chr13 8703369 8703640 -93169529 + AluSx SINE Alu 1 279 -33 8600 129 21 21 chr13 8703640 8704436 -93168733 + L1MA5A LINE L1 6139 6934 -5 414 337 143 19 chr13 8704457 8705071 -93168098 - L2 LINE L2 -1239 2075 1386 229 73 49 0 chr13 8705221 8705262 -93167907 + AluSx SINE Alu 260 302 0 236 387 93 17 chr13 8705267 8705569 -93167600 - L2 LINE L2 -2671 643 319 617 288 80 74 chr13 8706232 8706597 -93166572 + L2 LINE L2 2897 3263 -9 320 93 0 19 chr13 8706599 8706653 -93166516 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 209 303 45 34 chr13 8706685 8706774 -93166395 + MIR SINE MIR 13 102 -160 2078 139 7 0 chr13 8707211 8707512 -93165657 - AluSx SINE Alu -9 303 1 1535 236 111 39 chr13 8708067 8708534 -93164635 + MLT1D LTR MaLR 1 501 -4 465 305 15 8 chr13 8708754 8708885 -93164284 - MIR SINE MIR -50 212 81 640 252 138 24 chr13 8708998 8709123 -93164046 + MIR SINE MIR 13 122 -140 201 39 0 0 chr13 8709123 8709149 -93164020 + (TGG)n Simple_repeat Simple_repeat 1 26 0 640 252 138 24 chr13 8709149 8709233 -93163936 + MIR SINE MIR 122 246 -16 237 303 0 0 chr13 8710120 8710186 -93162983 + T-rich Low_complexity Low_complexity 4 69 0 1550 221 65 3 chr13 8710740 8711296 -93161873 + L1MA10 LINE L1 5035 5609 -703 19670 164 22 54 chr13 8711302 8715624 -93157545 + L1MA3 LINE L1 11 3945 -3779 183 80 0 0 chr13 8715624 8715649 -93157520 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 19670 164 22 54 chr13 8715649 8719311 -93153858 + L1MA3 LINE L1 3945 7724 0 3404 166 16 55 chr13 8719311 8720075 -93153094 + L1MA10 LINE L1 5594 6332 -2 417 239 66 80 chr13 8720385 8720598 -93152571 + MER63A DNA MER1_type 1 210 0 247 298 97 0 chr13 8721820 8721944 -93151225 - MIR SINE MIR -19 243 108 189 107 0 0 chr13 8722008 8722036 -93151133 + (TG)n Simple_repeat Simple_repeat 1 28 0 304 355 43 7 chr13 8722044 8722182 -93150987 + L2 LINE L2 3129 3271 -1 393 224 66 0 chr13 8724060 8724212 -93148957 + (TA)n Simple_repeat Simple_repeat 2 163 0 2078 96 0 84 chr13 8724761 8725094 -93148075 - AluSg SINE Alu -5 305 1 663 347 89 44 chr13 8725167 8725740 -93147429 + L1M4 LINE L1 3390 3988 -2158 313 240 156 19 chr13 8726024 8726178 -93146991 + L1ME4a LINE L1 5933 6107 -14 2252 95 0 7 chr13 8726862 8727156 -93146013 - AluSx SINE Alu -20 292 1 467 247 7 91 chr13 8727864 8728018 -93145151 + MIR SINE MIR 1 141 -121 469 301 146 69 chr13 8728066 8728625 -93144544 + L2 LINE L2 2711 3312 -1 290 162 103 15 chr13 8728991 8729059 -93144110 + L1ME4a LINE L1 5574 5647 -474 373 315 103 14 chr13 8729067 8729280 -93143889 + L1ME4a LINE L1 5684 5915 -206 274 282 74 13 chr13 8729300 8729449 -93143720 + L1ME4a LINE L1 5964 6121 0 940 289 44 22 chr13 8729573 8729937 -93143232 + L1MC4a LINE L1 5512 5883 -1925 246 205 48 84 chr13 8731457 8731540 -93141629 + L2 LINE L2 3137 3216 -56 232 200 0 0 chr13 8732387 8732432 -93140737 - MER117 DNA MER1_type -152 45 1 265 360 0 0 chr13 8734025 8734114 -93139055 + L2 LINE L2 2658 2746 -568 1070 104 0 0 chr13 8784120 8784255 -93088914 + AluSg/x SINE Alu 156 290 -22 1896 134 0 24 chr13 8784280 8784570 -93088599 + AluSx SINE Alu 26 308 -4 463 278 203 41 chr13 8786311 8786549 -93086620 + L1ME4a LINE L1 5577 5775 -346 1940 119 59 7 chr13 8786549 8786835 -93086334 + AluSg SINE Alu 1 301 -9 463 278 203 41 chr13 8786835 8787068 -93086101 + L1ME4a LINE L1 5775 6117 -4 475 307 121 59 chr13 8787121 8787492 -93085677 + L3 LINE CR1 877 1270 -307 490 286 14 21 chr13 8787813 8787953 -93085216 - L2 LINE L2 0 3313 3175 502 222 24 16 chr13 8787956 8788082 -93085087 - MIR SINE MIR -46 216 90 695 269 82 26 chr13 8788953 8789221 -93083948 - L2 LINE L2 -4 3309 3027 373 230 87 24 chr13 8789259 8789385 -93083784 + MIR SINE MIR 61 194 -68 1646 108 0 5 chr13 8789450 8789664 -93083505 + AluSq SINE Alu 1 213 -100 382 94 166 1 chr13 8789668 8789755 -93083414 + L1MC2 LINE L1 6241 6343 -1 2110 148 0 0 chr13 8789792 8790102 -93083067 - AluSx SINE Alu -2 310 1 1402 92 0 0 chr13 8790924 8791097 -93082072 - AluSq SINE Alu -118 195 23 397 286 101 51 chr13 8791211 8791389 -93081780 - HAL1 LINE L1 -2286 221 35 313 250 0 34 chr13 8791389 8791477 -93081692 - LTR39 LTR ERV1 0 783 699 1160 203 18 31 chr13 8791540 8791826 -93081343 - LTR39 LTR ERV1 -501 282 1 637 76 0 0 chr13 8791842 8791921 -93081248 + AluS SINE Alu 2 80 -233 2471 84 3 0 chr13 8792338 8792648 -93080521 + AluY SINE Alu 1 311 0 21 0 0 0 chr13 8794438 8794459 -93078710 + AT_rich Low_complexity Low_complexity 1 21 0 262 260 135 31 chr13 8796458 8796554 -93076615 + L2 LINE L2 3137 3242 -30 192 121 0 190 chr13 8796850 8796908 -93076261 + L2 LINE L2 3267 3313 0 521 273 11 23 chr13 8797345 8797521 -93075648 - MER5B DNA MER1_type -3 175 2 664 274 148 56 chr13 8797671 8797826 -93075343 + L2 LINE L2 1556 1695 -1619 2232 110 3 13 chr13 8797826 8798127 -93075042 + AluSx SINE Alu 2 299 -13 664 274 148 56 chr13 8798127 8798580 -93074589 + L2 LINE L2 1695 2220 -1094 972 219 79 4 chr13 8798582 8798847 -93074322 + MER33 DNA MER1_type 1 285 -39 1909 160 7 114 chr13 8798917 8799373 -93073796 - MLT2D LTR ERVL 0 414 8 441 287 99 22 chr13 8799373 8799554 -93073615 + L2 LINE L2 2302 2496 -818 2039 165 39 31 chr13 8799558 8800103 -93073066 - MLT2A2 LTR ERVL 0 554 1 1036 291 121 14 chr13 8800105 8800534 -93072635 + L2 LINE L2 2498 2972 -342 1051 166 8 81 chr13 8800543 8800725 -93072444 - L1MA3 LINE L1 0 6305 6146 1849 191 3 0 chr13 8800725 8801029 -93072140 - AluJb SINE Alu -7 305 1 1051 166 8 81 chr13 8801029 8801105 -93072064 - L1MA3 LINE L1 -159 6146 6066 367 290 129 8 chr13 8801492 8801616 -93071553 + MIR SINE MIR 119 257 -5 248 347 60 40 chr13 8802110 8802309 -93070860 + L3 LINE CR1 64 266 -1311 202 350 52 0 chr13 8802442 8802539 -93070630 - MIR SINE MIR 0 262 161 428 271 0 8 chr13 8803106 8803224 -93069945 - LTR33 LTR ERVL -11 510 394 290 243 0 14 chr13 8803451 8803525 -93069644 - LTR33 LTR ERVL -448 73 1 2067 123 45 0 chr13 8803691 8803983 -93069186 + AluSx SINE Alu 1 305 -7 180 111 0 0 chr13 8803992 8804019 -93069150 + (A)n Simple_repeat Simple_repeat 1 27 0 443 244 36 48 chr13 8804019 8804187 -93068982 + Charlie8 DNA MER1_type 2 167 -2250 403 295 122 58 chr13 8804630 8804669 -93068500 + L2 LINE L2 2730 2765 -507 973 207 31 45 chr13 8804669 8804891 -93068278 + MER20 DNA MER1_type 1 219 0 403 295 122 58 chr13 8804891 8805303 -93067866 + L2 LINE L2 2765 3223 -49 235 362 80 55 chr13 8806610 8806809 -93066360 - MIR3 SINE MIR -3 205 2 520 278 112 18 chr13 8806847 8807083 -93066086 + MIR SINE MIR 9 255 -7 1895 180 103 5 chr13 8807333 8807711 -93065458 - Tigger7 DNA MER2_type -2065 422 8 543 168 0 0 chr13 8807808 8807903 -93065266 - AluSg/x SINE Alu -2 308 214 294 192 0 0 chr13 8807930 8807982 -93065187 + HERVK LTR ERVK 439 490 -6753 854 170 18 47 chr13 8807985 8808156 -93065013 + LTR5 LTR ERVK 804 969 0 1218 195 46 8 chr13 8808156 8808418 -93064751 + HERVK LTR ERVK 1 272 -6971 1187 157 0 0 chr13 8808400 8808598 -93064571 + HERVK LTR ERVK 423 620 -6623 * 2192 141 0 25 chr13 8808929 8809249 -93063920 + AluSx SINE Alu 1 312 0 1057 241 124 37 chr13 8809338 8809540 -93063629 + MLT1C LTR MaLR 1 184 -283 1901 161 0 0 chr13 8809540 8809825 -93063344 + AluJb SINE Alu 1 285 -27 1057 241 124 37 chr13 8809825 8810050 -93063119 + MLT1C LTR MaLR 184 465 -2 1740 126 0 4 chr13 8811007 8811253 -93061916 - AluSx SINE Alu -8 304 60 1706 94 76 10 chr13 8811253 8811579 -93061590 + LTR7 LTR ERV1 1 408 -42 465 94 0 0 chr13 8811591 8811655 -93061514 - AluJ/FLAM SINE Alu -247 65 2 447 355 6 6 chr13 8812623 8812789 -93060380 + MIR3 SINE MIR 37 202 -6 2129 113 3 7 chr13 8812968 8813261 -93059908 + AluSx SINE Alu 1 292 -20 2031 137 0 0 chr13 8817785 8818069 -93055100 + AluSx SINE Alu 11 294 -18 238 185 0 92 chr13 8818583 8818648 -93054521 + MST-int LTR MaLR 673 731 -920 346 155 31 210 chr13 8818735 8819026 -93054143 - L1MC4 LINE L1 0 8042 7804 639 240 91 68 chr13 8819419 8819758 -93053411 - MLT1G LTR MaLR -242 348 1 192 319 37 111 chr13 8819789 8819924 -93053245 + L2 LINE L2 3123 3247 -25 2331 107 10 0 chr13 8819944 8820253 -93052916 + AluSx SINE Alu 1 312 0 1321 227 40 73 chr13 8820442 8820922 -93052247 + MER101 LTR ERV1 11 474 0 2042 128 0 20 chr13 8821977 8822283 -93050886 + AluSx SINE Alu 1 300 -12 2642 37 0 0 chr13 8822548 8822843 -93050326 + AluY SINE Alu 1 295 -16 1601 197 0 3 chr13 8822857 8823152 -93050017 + AluJo SINE Alu 4 297 -15 1464 189 94 31 chr13 8823212 8823407 -93049762 - MER2 DNA MER2_type 0 345 121 2022 122 6 45 chr13 8823407 8823719 -93049450 - AluSx SINE Alu -12 300 1 1464 189 94 31 chr13 8823719 8823841 -93049328 - MER2 DNA MER2_type -224 121 8 2012 158 28 50 chr13 8823965 8824364 -93048805 - MLT1B LTR MaLR 0 390 1 311 0 26 0 chr13 8824541 8824580 -93048589 + (CA)n Simple_repeat Simple_repeat 2 41 0 1815 146 43 67 chr13 8824875 8825266 -93047903 + MLT1B LTR MaLR 9 390 0 387 348 42 70 chr13 8825767 8826126 -93047043 + L2 LINE L2 2906 3254 -18 209 237 0 0 chr13 8827213 8827251 -93045918 + L2 LINE L2 3215 3252 -20 296 260 207 12 chr13 8827703 8827872 -93045297 - MIR SINE MIR -12 250 49 220 238 53 19 chr13 8827940 8828047 -93045122 + MIR SINE MIR 83 202 -6 2067 218 98 33 chr13 8829085 8829687 -93043482 - LTR48B LTR ERV1 0 644 4 2546 53 7 3 chr13 8829710 8830010 -93043159 - AluY SINE Alu -10 301 1 1499 213 145 43 chr13 8830631 8831059 -93042110 + MLT2B1 LTR ERVL 3 386 -134 1951 160 71 0 chr13 8831059 8831384 -93041785 + MER7A DNA MER2_type 1 346 0 384 22 0 0 chr13 8831384 8831429 -93041740 + (TA)n Simple_repeat Simple_repeat 1 45 0 1499 213 145 43 chr13 8831429 8831469 -93041700 + MLT2B1 LTR ERVL 385 520 0 25 0 0 0 chr13 8831515 8831540 -93041629 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr13 8831746 8831771 -93041398 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 8832380 8832401 -93040768 + AT_rich Low_complexity Low_complexity 1 21 0 975 169 0 0 chr13 8832984 8833138 -93040031 + FRAM SINE Alu 5 158 -8 2090 117 10 10 chr13 8833612 8833746 -93039423 + AluJb SINE Alu 1 134 -178 2204 110 7 3 chr13 8833746 8834037 -93039132 + AluSq SINE Alu 1 292 -21 2090 117 10 10 chr13 8834037 8834201 -93038968 + AluJb SINE Alu 133 299 -13 186 118 0 0 chr13 8834276 8834310 -93038859 + (TG)n Simple_repeat Simple_repeat 1 34 0 479 312 32 0 chr13 8834415 8834569 -93038600 + MIR SINE MIR 14 172 -90 322 272 126 0 chr13 8835285 8835388 -93037781 + MIR SINE MIR 66 181 -81 2132 125 32 35 chr13 8835680 8835724 -93037445 - L1MB2 LINE L1 -7 6164 6121 219 36 0 0 chr13 8835724 8835752 -93037417 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2415 61 0 0 chr13 8835752 8836032 -93037137 - AluY SINE Alu -31 280 1 2132 125 32 35 chr13 8836032 8836362 -93036807 - L1MB2 LINE L1 -48 6123 5790 666 133 71 0 chr13 8836550 8836663 -93036506 - L1MB2 LINE L1 -384 5799 5679 353 276 18 29 chr13 8839414 8839584 -93033585 + L1ME4a LINE L1 5954 6121 0 879 216 22 35 chr13 8839780 8840012 -93033157 + MIR SINE MIR 33 261 -1 890 132 0 22 chr13 8840116 8840252 -93032917 - FLAM_C SINE Alu 0 133 1 1552 205 10 3 chr13 8844085 8844373 -93028796 - AluJo SINE Alu -22 290 1 216 209 0 0 chr13 8844846 8844889 -93028280 + A-rich Low_complexity Low_complexity 2 44 0 2136 103 0 31 chr13 8844889 8845208 -93027961 + AluSx SINE Alu 1 309 -3 237 229 43 29 chr13 8845219 8845289 -93027880 - Charlie8 DNA MER1_type -2343 74 4 306 0 0 0 chr13 8845863 8845897 -93027272 + (CA)n Simple_repeat Simple_repeat 2 35 0 191 336 80 24 chr13 8845971 8846096 -93027073 + L2 LINE L2 2926 3057 -256 2251 123 0 0 chr13 8847440 8847749 -93025420 - AluSc SINE Alu 0 309 1 232 250 17 0 chr13 8848081 8848141 -93025028 + MIR SINE MIR 81 141 -121 184 268 18 0 chr13 8848965 8849021 -93024148 - MIR SINE MIR -61 147 91 2113 128 131 11 chr13 8849406 8849788 -93023381 + MSTA LTR MaLR 1 428 0 339 266 187 48 chr13 8849924 8850213 -93022956 - L2 LINE L2 -4 3268 2940 226 247 221 19 chr13 8850639 8850793 -93022376 + MIR SINE MIR 78 262 0 477 205 98 71 chr13 8851910 8852005 -93021164 + L1MC4 LINE L1 7813 7904 -138 2357 64 3 10 chr13 8852005 8852302 -93020867 + AluY SINE Alu 1 295 -16 477 205 98 71 chr13 8852302 8852430 -93020739 + L1MC4 LINE L1 7904 8042 0 211 74 0 0 chr13 8852453 8852480 -93020689 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 397 62 31 15 chr13 8852480 8852545 -93020624 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1622 116 0 4 chr13 8852645 8852877 -93020292 + AluY SINE Alu 66 296 -15 341 228 132 0 chr13 8852891 8853005 -93020164 + L1MC4 LINE L1 7914 8042 0 211 74 0 0 chr13 8853028 8853055 -93020114 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 703 66 19 9 chr13 8853055 8853161 -93020008 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1759 185 6 13 chr13 8853162 8853476 -93019693 - AluJo SINE Alu 0 312 1 3327 153 35 56 chr13 8853622 8854303 -93018866 - L1MC2 LINE L1 -377 5967 5301 521 281 63 74 chr13 8854416 8854878 -93018291 + MLT1J LTR MaLR 25 481 -30 197 369 29 39 chr13 8855065 8855168 -93018001 - L2 LINE L2 -33 3280 3179 242 175 79 0 chr13 8855975 8856038 -93017131 + CT-rich Low_complexity Low_complexity 4 71 0 21 71 0 0 chr13 8856688 8856730 -93016439 + GC_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 8856789 8856815 -93016354 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr13 8856984 8857015 -93016154 + GC_rich Low_complexity Low_complexity 1 31 0 2554 70 0 3 chr13 8858851 8859165 -93014004 - AluSq SINE Alu 0 313 1 235 343 111 0 chr13 8859556 8859655 -93013514 - L2 LINE L2 -12 3260 3151 239 327 136 32 chr13 8860093 8860344 -93012825 - L2 LINE L2 -414 2900 2624 1809 196 159 25 chr13 8860660 8861169 -93012000 + MER119 DNA MER1_type 7 583 0 223 338 31 12 chr13 8861197 8861357 -93011812 - L2 LINE L2 -1108 2206 2044 312 139 14 14 chr13 8862060 8862132 -93011037 + C-rich Low_complexity Low_complexity 1 72 0 254 0 83 0 chr13 8862146 8862182 -93010987 + T-rich Low_complexity Low_complexity 3 41 0 717 120 0 0 chr13 8862480 8862580 -93010589 - FLAM_C SINE Alu -12 131 32 1949 118 37 0 chr13 8862635 8862906 -93010263 + AluSx SINE Alu 2 282 -30 26 30 0 0 chr13 8863042 8863075 -93010094 + AT_rich Low_complexity Low_complexity 1 33 0 267 317 49 8 chr13 8863336 8863459 -93009710 - L2 LINE L2 -6 3307 3180 186 196 0 87 chr13 8863959 8864005 -93009164 + L2 LINE L2 3267 3308 -5 249 161 0 71 chr13 8864267 8864323 -93008846 - AluJo SINE Alu -165 137 86 * 259 167 21 0 chr13 8864292 8864340 -93008829 - Alu SINE Alu -20 282 234 614 167 0 0 chr13 8864343 8864451 -93008718 + AluSg/x SINE Alu 195 302 -7 272 268 180 10 chr13 8865911 8866105 -93007064 - MLT1J2 LTR MaLR -223 227 1 193 250 87 65 chr13 8866286 8866378 -93006791 + MER5C DNA MER1_type 1 94 -230 750 248 40 49 chr13 8866646 8866872 -93006297 + MER58A DNA MER1_type 1 224 0 29 0 0 0 chr13 8866944 8866973 -93006196 + AT_rich Low_complexity Low_complexity 1 29 0 210 258 0 0 chr13 8867024 8867086 -93006083 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 782 249 130 38 chr13 8867086 8867521 -93005648 - L2 LINE L2 -208 3105 2639 863 273 131 28 chr13 8868455 8869210 -93003959 + L1M4 LINE L1 2576 3408 -2738 * 1848 249 125 28 chr13 8869209 8869252 -93003917 - L1MC4a LINE L1 -1541 6267 6230 2268 90 0 7 chr13 8869252 8869551 -93003618 + AluSq SINE Alu 1 297 -16 1848 249 125 28 chr13 8869551 8870428 -93002741 - L1MC4a LINE L1 -1578 6230 5258 878 315 74 47 chr13 8870584 8871826 -93001343 - L1MC4a LINE L1 -1088 5058 3757 2044 106 47 0 chr13 8871826 8872101 -93001068 - AluSx SINE Alu -24 288 1 878 315 74 47 chr13 8872101 8872535 -93000634 - L1MC4a LINE L1 -2389 3757 3336 329 132 29 0 chr13 8872611 8872679 -93000490 - L1MB3 LINE L1 -1 6182 6113 435 76 0 0 chr13 8872684 8872750 -93000419 - L1 LINE L1 -966 5180 5115 617 62 0 0 chr13 8873123 8873203 -92999966 - AluS SINE Alu -233 80 1 233 298 53 7 chr13 8873203 8873354 -92999815 - L1P LINE L1 -2355 3791 3634 241 242 0 0 chr13 8873567 8873629 -92999540 - L1P LINE L1 -2741 3405 3344 372 103 29 0 chr13 8873712 8873780 -92999389 - L1MB3 LINE L1 -1 6182 6113 439 75 0 0 chr13 8873785 8873852 -92999317 - L1 LINE L1 -966 5180 5114 797 210 205 11 chr13 8874059 8874412 -92998757 - L1ME3A LINE L1 -24 6140 5724 490 332 34 12 chr13 8874821 8875099 -92998070 - L1MEc LINE L1 -3824 2398 2148 2350 84 0 0 chr13 8875188 8875486 -92997683 - AluY SINE Alu -13 298 1 312 263 111 47 chr13 8875600 8875790 -92997379 - HAL1b LINE L1 -501 847 646 482 213 142 0 chr13 8875809 8875936 -92997233 + MER105 DNA DNA 56 200 -4 621 293 47 89 chr13 8875947 8876656 -92996513 - HAL1b LINE L1 -744 1531 53 203 196 22 0 chr13 8876667 8876713 -92996456 + T-rich Low_complexity Low_complexity 3 49 0 317 308 58 0 chr13 8876779 8876899 -92996270 - MER5B DNA MER1_type -32 146 20 489 250 16 0 chr13 8877085 8877209 -92995960 - L1MD2 LINE L1 -18 6341 6216 858 176 72 21 chr13 8878082 8878275 -92994894 - L1MD2 LINE L1 -135 6224 6022 1002 204 43 88 chr13 8878275 8878673 -92994496 - L1M4 LINE L1 -1817 4329 3950 2094 184 76 4 chr13 8878686 8879158 -92994011 - MER73 LTR ERVL -12 632 127 434 151 143 8 chr13 8879210 8879336 -92993833 - L1M4 LINE L1 -2197 3949 3807 1448 174 8 11 chr13 8879338 8879602 -92993567 - AluJo SINE Alu 0 312 50 24 53 0 0 chr13 8879675 8879713 -92993456 + AT_rich Low_complexity Low_complexity 1 38 0 1496 99 12 62 chr13 8880244 8880486 -92992683 - MER30 DNA MER1_type 0 230 1 2456 83 3 3 chr13 8880962 8881274 -92991895 - AluSp SINE Alu 0 313 2 1818 185 3 7 chr13 8881279 8881582 -92991587 - AluJb SINE Alu -10 302 1 594 265 38 52 chr13 8882611 8882744 -92990425 + MIR SINE MIR 16 146 -116 2185 124 3 7 chr13 8882744 8883051 -92990118 + AluSx SINE Alu 1 306 -6 594 265 38 52 chr13 8883051 8883128 -92990041 + MIR SINE MIR 146 223 -39 250 255 202 11 chr13 8885910 8886004 -92987165 + L2 LINE L2 3151 3262 -10 387 309 75 15 chr13 8886609 8886998 -92986171 - L1M4 LINE L1 -1113 5033 4622 217 255 20 0 chr13 8887070 8887121 -92986048 + MIR SINE MIR 38 89 -119 1447 163 0 4 chr13 8887256 8887483 -92985686 + AluJb SINE Alu 86 311 -1 376 258 26 26 chr13 8889001 8889152 -92984017 - L1MD2 LINE L1 -2251 5557 5407 1893 158 21 0 chr13 8889154 8889445 -92983724 - AluJb SINE Alu -15 297 1 1978 254 106 40 chr13 8891060 8892198 -92980971 - L2 LINE L2 -1 3312 2102 1128 201 51 56 chr13 8892706 8893079 -92980090 - MLT1A2 LTR MaLR 0 374 4 427 275 77 34 chr13 8893902 8894109 -92979060 + L2 LINE L2 3098 3313 0 324 289 62 31 chr13 8894132 8894357 -92978812 - L1ME4a LINE L1 -238 5883 5652 21 36 0 0 chr13 8894449 8894477 -92978692 + AT_rich Low_complexity Low_complexity 1 28 0 246 312 65 39 chr13 8894661 8894815 -92978354 + L2 LINE L2 2326 2483 -831 204 357 31 10 chr13 8895417 8895515 -92977654 + L2 LINE L2 3173 3272 0 247 281 184 0 chr13 8895567 8895681 -92977488 - L1MCc LINE L1 -4638 2484 2350 * 3636 214 59 24 chr13 8895673 8896720 -92976449 - L1MD2 LINE L1 -2 6357 5274 728 264 107 63 chr13 8896731 8897479 -92975690 - L1MCc LINE L1 -4778 2344 1630 2051 130 10 7 chr13 8897479 8897786 -92975383 - AluSx SINE Alu -4 308 1 234 0 0 0 chr13 8897796 8897822 -92975347 + (TTG)n Simple_repeat Simple_repeat 2 27 0 728 264 107 63 chr13 8897822 8897836 -92975333 - L1MCc LINE L1 -5500 1622 1610 7256 26 25 0 chr13 8897836 8898808 -92974361 - L1PA4 LINE L1 -3 6152 5158 728 264 107 63 chr13 8898808 8898982 -92974187 - L1MCc LINE L1 -5512 1610 1129 1952 125 32 0 chr13 8899234 8899513 -92973656 - AluSx SINE Alu -24 288 1 1356 118 5 5 chr13 8899523 8899726 -92973443 - AluSg/x SINE Alu 0 312 110 505 284 16 37 chr13 8899820 8900063 -92973106 - L1MCc LINE L1 -5972 451 214 898 236 26 15 chr13 8900607 8900802 -92972367 + MIR SINE MIR 12 208 -54 285 342 51 8 chr13 8902426 8902575 -92970594 - MIR3 SINE MIR -67 141 3 703 163 16 31 chr13 8903897 8904026 -92969143 + FLAM_C SINE Alu 1 127 -16 278 231 82 82 chr13 8904469 8904616 -92968553 + MIR SINE MIR 66 212 -50 233 273 18 0 chr13 8905884 8905939 -92967230 - L2 LINE L2 -9 3304 3249 1717 181 6 22 chr13 8906644 8906673 -92966496 - AluJb SINE Alu -2 310 282 408 20 0 0 chr13 8906673 8906722 -92966447 + (TG)n Simple_repeat Simple_repeat 1 49 0 1717 181 6 22 chr13 8906722 8907007 -92966162 - AluJb SINE Alu -30 282 1 1481 129 63 94 chr13 8907178 8907528 -92965641 + MER44D DNA MER2_type 1 609 0 1403 189 120 53 chr13 8907634 8907979 -92965190 - LTR54B LTR ERV1 -1 497 114 1820 175 0 13 chr13 8907979 8908287 -92964882 - AluJb SINE Alu -8 304 1 1403 189 120 53 chr13 8908287 8908391 -92964778 - LTR54B LTR ERV1 -384 114 18 180 261 99 27 chr13 8908812 8908923 -92964246 + L2 LINE L2 3113 3231 -82 693 209 61 10 chr13 8910260 8910456 -92962713 - MER3 DNA MER1_type -2 207 2 745 149 15 30 chr13 8911388 8911522 -92961647 - FLAM_C SINE Alu 0 133 2 265 282 208 7 chr13 8911549 8911698 -92961471 + MIR SINE MIR 58 236 -26 253 367 66 53 chr13 8912389 8912615 -92960554 + L2 LINE L2 3044 3272 0 47 44 0 0 chr13 8913491 8913559 -92959610 + AT_rich Low_complexity Low_complexity 1 68 0 2130 104 3 17 chr13 8913839 8914137 -92959032 + AluY SINE Alu 1 294 -17 208 204 114 0 chr13 8914304 8914348 -92958821 + MIR SINE MIR 94 142 -66 701 229 64 4 chr13 8914667 8914903 -92958266 + L1M4 LINE L1 2786 3035 -3111 2241 109 0 13 chr13 8915645 8915958 -92957211 - AluSc SINE Alu 0 309 1 458 184 0 18 chr13 8915968 8915980 -92957189 - L1MA10 LINE L1 -2 6332 6321 3464 206 54 12 chr13 8915980 8916877 -92956292 - L1ME1 LINE L1 -5 6161 5229 759 216 83 10 chr13 8917868 8918072 -92955097 + MIR SINE MIR 13 231 -31 1826 136 38 35 chr13 8918080 8918447 -92954722 + THE1C LTR MaLR 6 373 -2 387 245 81 14 chr13 8918994 8919156 -92954013 - L1ME LINE L1 -396 5766 5587 23 0 0 0 chr13 8920752 8920775 -92952394 + AT_rich Low_complexity Low_complexity 1 23 0 207 384 81 0 chr13 8921535 8921621 -92951548 + L2 LINE L2 3102 3194 -78 508 249 40 90 chr13 8921747 8921948 -92951221 - MIR3 SINE MIR -15 193 3 1187 123 0 0 chr13 8922977 8923139 -92950030 + AluSg/x SINE Alu 132 293 -17 2617 250 91 53 chr13 8923242 8925574 -92947595 + L1MCc LINE L1 17 2258 -4683 2735 141 16 87 chr13 8925574 8926128 -92947041 - MLT2B2 LTR ERVL 0 515 1 2617 250 91 53 chr13 8926128 8926376 -92946793 + L1MCc LINE L1 2258 2495 -4446 2772 121 19 23 chr13 8926376 8926863 -92946306 - MER31A LTR ERV1 0 485 1 2617 250 91 53 chr13 8926863 8927292 -92945877 + L1MCc LINE L1 2495 3355 -3586 28 0 0 0 chr13 8927571 8927599 -92945570 + AT_rich Low_complexity Low_complexity 1 28 0 202 211 0 0 chr13 8928076 8928114 -92945055 + (TATG)n Simple_repeat Simple_repeat 4 41 0 1067 31 0 0 chr13 8928121 8928251 -92944918 + L1PA2 LINE L1 6026 6155 0 189 0 0 0 chr13 8928259 8928280 -92944889 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 445 316 72 35 chr13 8929642 8930184 -92942985 - HERV16 LTR ERVL -1494 3502 3158 36 23 0 0 chr13 8930327 8930370 -92942799 + AT_rich Low_complexity Low_complexity 1 43 0 36619 81 6 11 chr13 8930512 8933548 -92939621 - L1PA6 LINE L1 -1 6153 3103 2392 91 0 3 chr13 8933548 8933855 -92939314 - AluSp SINE Alu -7 306 1 36619 81 6 11 chr13 8933855 8936999 -92936170 - L1PA6 LINE L1 -3051 3103 11 705 342 47 2 chr13 8937024 8937433 -92935736 - HERV16 LTR ERVL -2564 3200 2774 282 314 58 35 chr13 8938252 8938478 -92934691 - LTR16B LTR ERVL -17 447 217 1468 151 177 57 chr13 8939096 8939481 -92933688 + MSTB1 LTR MaLR 2 432 0 206 280 96 56 chr13 8939768 8939893 -92933276 - L2 LINE L2 -7 3265 3136 1764 184 33 29 chr13 8940048 8940500 -92932669 - MER74A LTR ERVL -30 528 75 677 150 92 0 chr13 8940490 8940610 -92932559 - MSTB LTR MaLR -294 132 2 * 2161 114 7 16 chr13 8940750 8941057 -92932112 - AluSx SINE Alu -7 305 2 910 257 139 43 chr13 8941101 8941661 -92931508 - HAL1 LINE L1 -1628 879 266 3075 143 10 0 chr13 8941751 8942240 -92930929 - LOR1a LTR ERV1 -3 494 1 285 233 17 0 chr13 8943144 8943204 -92929965 + L2 LINE L2 3251 3311 -2 1903 208 36 32 chr13 8944226 8944722 -92928447 + MLT1D LTR MaLR 1 498 -7 270 209 70 12 chr13 8944830 8944916 -92928253 - MER5B DNA MER1_type 0 178 88 1645 218 11 6 chr13 8945432 8945795 -92927374 + MLT1A1 LTR MaLR 1 365 0 284 265 5 83 chr13 8945987 8946191 -92926978 + L1MCc LINE L1 1283 1470 -4953 491 243 58 12 chr13 8946192 8946365 -92926804 + L1MCa LINE L1 539 719 -6222 22 0 0 0 chr13 8946397 8946419 -92926750 + AT_rich Low_complexity Low_complexity 1 22 0 244 227 72 0 chr13 8948314 8948411 -92924758 - L1ME LINE L1 -284 5837 5734 272 315 30 39 chr13 8949533 8949765 -92923404 + L1MCa LINE L1 1238 1467 -4956 * 3373 221 88 80 chr13 8949749 8950152 -92923017 + L1MCa LINE L1 6 404 -5920 1903 109 44 4 chr13 8950152 8950427 -92922742 + AluSg1 SINE Alu 3 288 -21 3373 221 88 80 chr13 8950427 8951432 -92921737 + L1MCa LINE L1 404 1489 -4835 1339 201 23 0 chr13 8951432 8951696 -92921473 + AluSx SINE Alu 42 311 -1 1518 252 139 22 chr13 8951708 8953243 -92919926 + L1MCa LINE L1 1595 3330 -3096 2006 302 158 25 chr13 8953243 8954466 -92918703 + L2 LINE L2 1223 2608 -706 965 276 177 24 chr13 8954526 8954950 -92918219 + L2 LINE L2 2825 3313 0 267 216 11 0 chr13 8955025 8955113 -92918056 + L1ME4a LINE L1 6025 6113 -8 241 203 17 0 chr13 8955168 8955227 -92917942 + L1ME4a LINE L1 6060 6119 -2 373 191 45 0 chr13 8955337 8955426 -92917743 - L1MC4 LINE L1 0 8042 7950 2570 195 57 78 chr13 8955507 8956400 -92916769 - L1MC4 LINE L1 -410 7632 6759 549 225 28 0 chr13 8956561 8956703 -92916466 + PABL_A-int LTR ERV1 4801 4946 -1385 251 152 0 0 chr13 8956729 8956775 -92916394 + PABL_A-int LTR ERV1 3918 3963 -1052 29 0 0 0 chr13 8957112 8957141 -92916028 + AT_rich Low_complexity Low_complexity 1 29 0 726 203 213 102 chr13 8957444 8957946 -92915223 + LTR64 LTR ERVK 1 558 0 21 0 0 0 chr13 8958594 8958615 -92914554 + AT_rich Low_complexity Low_complexity 1 21 0 270 308 17 0 chr13 8958840 8958957 -92914212 - MER103 DNA DNA -45 121 3 2067 287 24 40 chr13 8959243 8960444 -92912725 - L2 LINE L2 -1 3312 2132 243 290 129 46 chr13 8960599 8961034 -92912135 - L2 LINE L2 -1147 2167 1697 339 136 45 0 chr13 8961062 8961128 -92912041 - L1MB3 LINE L1 -7 6176 6108 2041 166 60 5 chr13 8961132 8961530 -92911639 - MSTB1 LTR MaLR -12 420 1 3071 151 45 26 chr13 8961530 8962171 -92910998 - L1MB2 LINE L1 -70 6101 5449 4567 122 14 7 chr13 8962462 8963160 -92910009 + L1PA16 LINE L1 5455 6157 -9 418 294 238 14 chr13 8963258 8963686 -92909483 - L2 LINE L2 -535 2779 2256 266 326 59 38 chr13 8964191 8964335 -92908834 + MIR SINE MIR 23 165 -64 194 208 0 75 chr13 8964633 8964686 -92908483 + L2 LINE L2 3264 3312 -1 201 321 81 42 chr13 8966797 8966970 -92906199 + MIR SINE MIR 16 194 -68 1960 62 117 7 chr13 8966970 8967243 -92905926 + AluSc SINE Alu 1 303 -6 1036 76 0 0 chr13 8969559 8969691 -92903478 - AluSg/x SINE Alu -7 305 174 2265 104 0 17 chr13 8969867 8970166 -92903003 - AluSq SINE Alu -19 294 1 5225 53 20 3 chr13 8970200 8970859 -92902310 + L1PA7 LINE L1 5484 6153 -1 21 0 0 0 chr13 8973010 8973031 -92900138 + AT_rich Low_complexity Low_complexity 1 21 0 190 329 49 12 chr13 8973758 8973840 -92899329 - L2 LINE L2 -54 3218 3134 196 310 0 0 chr13 8974217 8974275 -92898894 - L2 LINE L2 -253 3060 3003 239 272 12 25 chr13 8974546 8974627 -92898542 - L1MC4 LINE L1 -149 7893 7814 326 0 0 0 chr13 8974648 8974683 -92898486 - U2 snRNA snRNA -153 35 1 252 308 104 50 chr13 8975050 8975232 -92897937 - L1MC/D LINE L1 -2082 5726 5535 234 172 62 16 chr13 8975285 8975349 -92897820 - L1MC/D LINE L1 -753 5393 5327 429 20 0 0 chr13 8975826 8975876 -92897293 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 75 0 0 chr13 8975877 8975930 -92897239 + AT_rich Low_complexity Low_complexity 1 53 0 210 37 0 0 chr13 8975999 8976026 -92897143 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr13 8978597 8978625 -92894544 + AT_rich Low_complexity Low_complexity 1 28 0 382 219 133 16 chr13 8978650 8978778 -92894391 - L1ME4a LINE L1 -17 6104 5962 23 0 0 0 chr13 8981355 8981378 -92891791 + AT_rich Low_complexity Low_complexity 1 23 0 314 306 0 0 chr13 8982425 8982510 -92890659 + MER103 DNA DNA 5 89 -77 2062 119 3 17 chr13 8983540 8983842 -92889327 + AluJb SINE Alu 1 298 -14 1586 222 76 58 chr13 8984657 8985225 -92887944 + L1MC4 LINE L1 7465 8042 0 1380 141 0 23 chr13 8985236 8985456 -92887713 + AluJo SINE Alu 85 299 -13 294 260 26 0 chr13 8985630 8985707 -92887462 + MER3 DNA MER1_type 5 83 -126 232 214 14 71 chr13 8985693 8985763 -92887406 - Charlie5 DNA MER1_type -2546 66 1 * 250 230 126 0 chr13 8990190 8990277 -92882892 + L2 LINE L2 3136 3233 -39 204 339 0 0 chr13 8990369 8990431 -92882738 + MIR SINE MIR 184 245 -17 202 275 112 34 chr13 8990625 8990803 -92882366 - L2 LINE L2 -252 3020 2829 192 250 67 0 chr13 8991013 8991073 -92882096 - MIR3 SINE MIR -28 180 117 1567 249 102 85 chr13 8991370 8992299 -92880870 - L1ME LINE L1 -5116 954 10 22 56 0 0 chr13 8992325 8992361 -92880808 + AT_rich Low_complexity Low_complexity 1 36 0 2361 100 7 0 chr13 8992554 8992863 -92880306 + AluSx SINE Alu 1 311 -1 1851 164 0 13 chr13 8993847 8994151 -92879018 + AluJo SINE Alu 1 300 -12 279 0 0 0 chr13 8994152 8994183 -92878986 + (CA)n Simple_repeat Simple_repeat 1 31 0 351 250 17 58 chr13 8994977 8995097 -92878072 + MER5A DNA MER1_type 63 177 -12 1281 97 97 5 chr13 8996937 8997123 -92876046 - AluJo SINE Alu -15 297 95 3633 130 57 0 chr13 8998319 8998894 -92874275 + MER39B LTR ERV1 1 608 -45 532 211 49 8 chr13 8999329 8999452 -92873717 + L1MC4a LINE L1 5523 5650 -471 624 244 185 33 chr13 8999452 8999887 -92873282 + MLT1G1 LTR MaLR 1 595 0 689 231 124 20 chr13 8999888 9000186 -92872983 + L1MC4a LINE L1 5641 5969 -1839 296 208 0 0 chr13 9000488 9000560 -92872609 - MLT2C2 LTR ERVL 0 464 393 1668 201 129 12 chr13 9000604 9001023 -92872146 - MLT2B1 LTR ERVL -50 470 3 485 253 100 3 chr13 9001025 9001172 -92871997 + MIR SINE MIR 15 176 -58 2240 83 14 7 chr13 9001240 9001530 -92871639 - AluSq SINE Alu -21 292 1 209 57 29 0 chr13 9001573 9001608 -92871561 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 542 288 84 14 chr13 9001609 9002039 -92871130 - L1M4 LINE L1 -2868 3278 2819 862 114 16 0 chr13 9002039 9002162 -92871007 - AluSg/x SINE Alu -12 298 174 33 25 0 0 chr13 9002413 9002453 -92870716 + AT_rich Low_complexity Low_complexity 1 40 0 899 281 69 59 chr13 9002702 9003867 -92869302 - L1MEc LINE L1 -2161 4054 2778 2103 125 3 0 chr13 9004007 9004296 -92868873 + AluSx SINE Alu 1 290 -22 636 211 19 115 chr13 9004388 9004501 -92868668 - MIR SINE MIR -13 249 172 2488 39 0 0 chr13 9004501 9004826 -92868343 + AluY SINE Alu 1 325 0 636 211 19 115 chr13 9004826 9004971 -92868198 - MIR SINE MIR -90 172 15 432 271 118 23 chr13 9005023 9005366 -92867803 - L1MEc LINE L1 -3764 2481 2117 23 0 0 0 chr13 9005373 9005396 -92867773 + AT_rich Low_complexity Low_complexity 1 23 0 2089 145 3 0 chr13 9005487 9005783 -92867386 + AluSx SINE Alu 1 297 -15 1229 190 50 75 chr13 9005934 9006318 -92866851 - MLT1A2 LTR MaLR 0 374 1 2184 122 7 0 chr13 9006559 9006855 -92866314 - AluSx SINE Alu -14 298 1 400 246 116 25 chr13 9007012 9007201 -92865968 - LTR50 LTR ERVL -5 790 584 1946 159 31 0 chr13 9007201 9007542 -92865627 + MER6 DNA MER2_type -10 795 -70 294 233 0 0 chr13 9007741 9007827 -92865342 + (TG)n Simple_repeat Simple_repeat 1 86 0 215 270 203 7 chr13 9007936 9008084 -92865085 + MIR SINE MIR 17 193 -69 1550 82 32 9 chr13 9009017 9009236 -92863933 + L1PB1 LINE L1 5927 6150 -1 327 317 10 0 chr13 9010277 9010378 -92862791 + MER5B DNA MER1_type 70 171 -7 718 201 12 6 chr13 9010459 9010623 -92862546 - MER5A DNA MER1_type -2 187 23 1339 181 47 56 chr13 9011024 9011384 -92861785 - L1MB3 LINE L1 -1 6182 5826 447 283 91 24 chr13 9011391 9011588 -92861581 + MIR SINE MIR 5 212 -50 2159 126 3 7 chr13 9012082 9012391 -92860778 + AluSx SINE Alu 1 308 -4 639 227 29 29 chr13 9012487 9012659 -92860510 + MER5B DNA MER1_type 3 174 -4 1861 251 8 23 chr13 9012706 9013229 -92859940 - L1M4 LINE L1 -1678 4468 3954 355 212 75 137 chr13 9014149 9014390 -92858779 - MLT1K LTR MaLR -2 586 361 1363 205 47 26 chr13 9014770 9015111 -92858058 + MER7A DNA MER2_type 1 346 0 324 0 0 0 chr13 9015876 9015912 -92857257 + (CA)n Simple_repeat Simple_repeat 2 37 0 2427 80 0 16 chr13 9016084 9016395 -92856774 - AluSp SINE Alu -7 306 1 239 318 0 0 chr13 9017837 9017900 -92855269 + MIR SINE MIR 95 157 -105 300 116 23 0 chr13 9018351 9018394 -92854775 + MER41C LTR ERV1 23 66 -488 243 111 28 0 chr13 9018390 9018426 -92854743 + MER41C LTR ERV1 25 61 -493 * 3138 131 82 0 chr13 9018426 9018916 -92854253 + MER41C LTR ERV1 25 554 0 221 258 31 82 chr13 9018942 9019039 -92854130 + MIR SINE MIR 92 183 -79 248 278 67 0 chr13 9019139 9019229 -92853940 - MER117 DNA MER1_type -37 160 65 2294 92 3 0 chr13 9019945 9020250 -92852919 - AluSp SINE Alu -4 309 4 7032 93 17 14 chr13 9020712 9021731 -92851438 + HERVH LTR ERV1 1966 2987 -4726 752 167 20 13 chr13 9021725 9021875 -92851294 + HERVH LTR ERV1 3140 3290 -4423 * 3334 122 6 2 chr13 9021865 9022365 -92850804 + HERVH LTR ERV1 3492 3993 -3720 4452 141 1 1 chr13 9022367 9023029 -92850140 + HERVH LTR ERV1 4488 5149 -2564 969 121 0 0 chr13 9023030 9023179 -92849990 + HERVH LTR ERV1 5600 5748 -1965 1850 74 8 0 chr13 9023210 9023468 -92849701 + HERVH LTR ERV1 7429 7688 -25 1603 143 32 11 chr13 9023477 9023498 -92849671 + L1PA15 LINE L1 5880 5899 -266 3474 62 2 9 chr13 9023498 9023949 -92849220 + LTR7 LTR ERV1 1 448 -2 1603 143 32 11 chr13 9023949 9024207 -92848962 + L1PA15 LINE L1 5899 6165 0 1069 138 13 154 chr13 9024736 9025034 -92848135 - LTR8 LTR ERV1 0 691 436 8414 95 20 18 chr13 9025134 9026385 -92846784 - HERVH LTR ERV1 -6459 1254 1 3491 62 5 7 chr13 9026387 9026836 -92846333 - LTR7 LTR ERV1 -2 448 1 2495 141 10 5 chr13 9026836 9027225 -92845944 - L1PA15 LINE L1 -260 5905 5515 321 96 19 0 chr13 9027222 9027274 -92845895 + L1PA15 LINE L1 5474 5526 -642 * 720 287 116 10 chr13 9027527 9027977 -92845192 + MLT1G LTR MaLR 13 549 -41 622 349 7 0 chr13 9028218 9028487 -92844682 - L1ME LINE L1 -356 5765 5495 1877 114 36 23 chr13 9028892 9029198 -92843971 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr13 9029319 9029340 -92843829 + AT_rich Low_complexity Low_complexity 1 21 0 342 343 30 18 chr13 9030983 9031152 -92842017 - MIR SINE MIR -6 256 86 266 174 0 0 chr13 9033512 9033558 -92839611 - MLT2C2 LTR ERVL 0 554 509 249 65 0 0 chr13 9033578 9033609 -92839560 + MLT2C2 LTR ERVL 434 464 0 183 184 0 0 chr13 9033617 9033655 -92839514 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 2044 196 43 5 chr13 9033660 9034058 -92839111 - MLT2C2 LTR ERVL -48 416 4 414 349 9 5 chr13 9034427 9034642 -92838527 - L1ME2 LINE L1 -107 6126 5911 1387 256 45 8 chr13 9034714 9035233 -92837936 - L1ME2 LINE L1 -457 5776 5239 904 188 4 2 chr13 9035236 9035482 -92837687 - AluJb SINE Alu -17 295 2 603 238 72 18 chr13 9035488 9035711 -92837458 - L1ME2 LINE L1 -983 5232 4998 1934 170 89 25 chr13 9035763 9036168 -92837001 - Tigger2a DNA MER2_type -3 431 1 358 284 5 59 chr13 9036559 9036672 -92836497 - L1ME2 LINE L1 -4576 1820 1721 1918 154 0 6 chr13 9036672 9036984 -92836185 - AluSx SINE Alu -2 310 1 358 284 5 59 chr13 9036984 9037074 -92836095 - L1ME2 LINE L1 -4675 1721 1628 * 1583 192 60 6 chr13 9037070 9037419 -92835750 - L1MD1 LINE L1 0 6242 5875 539 242 80 105 chr13 9037408 9037846 -92835323 - L1ME2 LINE L1 -4756 1640 1214 * 1711 231 62 9 chr13 9039828 9040265 -92832904 + MLT1C LTR MaLR 8 467 0 1344 235 87 20 chr13 9040814 9041252 -92831917 - MLT1C LTR MaLR 0 467 1 698 208 127 34 chr13 9043003 9043390 -92829779 - MER31B LTR ERV1 0 543 1 276 264 104 32 chr13 9043494 9043619 -92829550 - MIR SINE MIR -71 191 58 293 230 127 56 chr13 9044156 9044282 -92828887 + MIR3 SINE MIR 23 157 -51 3345 288 171 29 chr13 9044915 9046871 -92826298 - L2 LINE L2 -1 3312 1060 316 266 36 27 chr13 9046896 9047007 -92826162 - MIR SINE MIR -93 115 16 1638 163 3 26 chr13 9047030 9047336 -92825833 + AluJo SINE Alu 1 299 -13 22 0 0 0 chr13 9047470 9047492 -92825677 + AT_rich Low_complexity Low_complexity 1 22 0 5573 116 19 26 chr13 9047635 9048344 -92824825 + L1PA13 LINE L1 4757 5467 -711 2249 87 3 6 chr13 9048344 9048656 -92824513 + AluY SINE Alu 1 311 0 5573 116 19 26 chr13 9048656 9049363 -92823806 + L1PA13 LINE L1 5467 6178 0 319 248 34 43 chr13 9049365 9049482 -92823687 - L1MEd LINE L1 -4919 1210 1095 243 231 81 46 chr13 9049607 9049780 -92823389 - L1MDa LINE L1 -4954 1469 1291 2536 119 14 5 chr13 9050181 9050552 -92822617 - THE1C LTR MaLR -1 374 1 10499 114 30 15 chr13 9050552 9052110 -92821059 - THE1C-int LTR MaLR 0 1580 1 2505 116 16 8 chr13 9052110 9052482 -92820687 - THE1C LTR MaLR 0 375 1 575 103 0 0 chr13 9052885 9052963 -92820206 + AluS SINE Alu 2 79 -233 274 268 78 13 chr13 9053064 9053217 -92819952 - L1MCa LINE L1 -5410 1016 854 393 121 0 30 chr13 9054215 9054281 -92818888 - MLT2A2 LTR ERVL 0 453 390 217 113 0 48 chr13 9054281 9054343 -92818826 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 2035 190 55 65 chr13 9054343 9054848 -92818321 - MLT2B3 LTR ERVL -54 500 1 661 276 63 82 chr13 9055434 9056089 -92817080 - L1MEd LINE L1 -5021 1098 457 2018 102 0 4 chr13 9056489 9056764 -92816405 + AluSg SINE Alu 18 291 -19 184 329 73 12 chr13 9058082 9058164 -92815005 + MIR SINE MIR 97 183 -79 2105 106 13 3 chr13 9058531 9058833 -92814336 - AluSx SINE Alu -7 305 1 287 189 0 124 chr13 9062470 9062655 -92810514 + G-rich Low_complexity Low_complexity 3 164 0 302 229 57 0 chr13 9063460 9063530 -92809639 - MER5A DNA MER1_type -71 118 45 901 174 25 0 chr13 9064320 9064556 -92808613 + CT-rich Low_complexity Low_complexity 1 241 0 243 334 175 25 chr13 9065844 9066290 -92806879 + L2 LINE L2 2174 2686 -628 260 293 81 32 chr13 9066535 9066658 -92806511 + L2 LINE L2 2961 3089 -224 21 0 0 0 chr13 9067208 9067229 -92805940 + AT_rich Low_complexity Low_complexity 1 21 0 1146 176 40 22 chr13 9068906 9069133 -92804036 + MER46A DNA MER2_type 2 232 -4 23 0 0 0 chr13 9069356 9069379 -92803790 + AT_rich Low_complexity Low_complexity 1 23 0 238 312 78 7 chr13 9069398 9069552 -92803617 + MIR SINE MIR 20 184 -78 1277 123 33 5 chr13 9071120 9071331 -92801838 + MSTB1 LTR MaLR 179 395 -37 1336 130 10 91 chr13 9071477 9071521 -92801648 - L1MB4 LINE L1 -1 6179 6133 2304 95 3 7 chr13 9071521 9071815 -92801354 - AluSg SINE Alu -17 293 1 1336 130 10 91 chr13 9071815 9071964 -92801205 - L1MB4 LINE L1 -47 6133 6018 1661 126 0 0 chr13 9071964 9072195 -92800974 + AluSq SINE Alu 73 303 -10 1336 130 10 91 chr13 9072195 9072307 -92800862 - L1MB4 LINE L1 -162 6018 5898 307 275 20 10 chr13 9072488 9072636 -92800533 - L1MB4 LINE L1 -423 5698 5621 31 0 0 0 chr13 9072738 9072769 -92800400 + AT_rich Low_complexity Low_complexity 1 31 0 1731 171 37 3 chr13 9074044 9074342 -92798827 - AluJo SINE Alu -4 308 1 2364 116 0 0 chr13 9074343 9074653 -92798516 - AluSx SINE Alu -2 310 1 1198 192 108 16 chr13 9074881 9074952 -92798217 - LTR52 LTR ERVL -2 419 356 347 60 20 0 chr13 9074952 9075002 -92798167 + (CA)n Simple_repeat Simple_repeat 1 51 0 1198 192 108 16 chr13 9075002 9075311 -92797858 - LTR52 LTR ERVL -65 356 4 2191 283 46 35 chr13 9076732 9077917 -92795252 + L1M4 LINE L1 2218 3416 -2730 5305 167 73 41 chr13 9079495 9079829 -92793340 - L1MC2 LINE L1 0 6344 6022 9992 23 7 199 chr13 9079829 9081537 -92791632 + SVA Other Other 1 1380 -6 5305 167 73 41 chr13 9081537 9082336 -92790833 - L1MC2 LINE L1 -322 6022 5141 1932 154 0 7 chr13 9082336 9082648 -92790521 - AluSx SINE Alu 0 312 1 5305 167 73 41 chr13 9082648 9082982 -92790187 - L1MC2 LINE L1 -1203 5141 4819 962 264 75 20 chr13 9083184 9083479 -92789690 - L1ME3A LINE L1 0 6170 5860 1396 87 101 5 chr13 9083504 9083711 -92789458 + MER30 DNA MER1_type 4 230 0 613 199 20 139 chr13 9083725 9083926 -92789243 - MER58C DNA MER1_type -1 214 38 1161 239 139 21 chr13 9083946 9084422 -92788747 - L1ME3A LINE L1 -367 5803 5272 230 167 24 0 chr13 9084484 9084526 -92788643 - LTR67 LTR ERVL -9 548 506 1285 246 91 48 chr13 9084551 9084991 -92788178 - MLT2B1 LTR ERVL -61 459 1 246 225 45 22 chr13 9085034 9085123 -92788046 - LTR67 LTR ERVL -107 450 360 704 264 146 21 chr13 9085768 9086048 -92787121 - MLT1J LTR MaLR -175 336 22 25 23 0 23 chr13 9086075 9086099 -92787070 + AT_rich Low_complexity Low_complexity 1 25 -17 2296 101 3 0 chr13 9086099 9086397 -92786772 - AluSp SINE Alu -14 299 1 25 23 0 23 chr13 9086397 9086415 -92786754 + AT_rich Low_complexity Low_complexity 25 42 0 3453 163 3 24 chr13 9087169 9087783 -92785386 - L1PB4 LINE L1 -2 6154 5554 2344 148 50 36 chr13 9087788 9088371 -92784798 - L1PB4 LINE L1 -678 5478 4882 1632 173 21 7 chr13 9088716 9089000 -92784169 - AluJo SINE Alu -24 288 1 1890 142 0 4 chr13 9089454 9089721 -92783448 - AluSx SINE Alu -46 266 1 268 320 61 44 chr13 9089928 9089958 -92783211 - L1MC/D LINE L1 -304 5817 5789 3200 162 18 11 chr13 9089958 9090513 -92782656 + MER89 LTR ERV1 1 559 0 268 320 61 44 chr13 9090513 9090768 -92782401 - L1MC/D LINE L1 -332 5789 5618 319 245 21 64 chr13 9090933 9091027 -92782142 - LTR16A LTR ERVL -201 249 160 256 290 40 40 chr13 9091157 9091257 -92781912 - L2 LINE L2 -94 3178 3079 195 266 62 16 chr13 9091458 9091522 -92781647 + L2 LINE L2 3241 3307 -6 * 200 178 0 22 chr13 9091517 9091562 -92781607 - MIR SINE MIR -86 176 133 200 280 0 0 chr13 9091785 9091835 -92781334 - L2 LINE L2 -1384 1930 1881 2222 116 51 23 chr13 9094158 9094512 -92778657 + THE1B LTR MaLR 1 364 0 11793 97 5 1 chr13 9094512 9096086 -92777083 + THE1B-int LTR MaLR 1 1580 0 2041 118 91 21 chr13 9096086 9096426 -92776743 + THE1B LTR MaLR 1 364 0 256 322 0 11 chr13 9096431 9096521 -92776648 - L2 LINE L2 -3 3269 3181 * 270 264 118 0 chr13 9096520 9096630 -92776539 + MIR SINE MIR 90 212 -50 187 344 16 38 chr13 9096710 9096843 -92776326 - L3b LINE CR1 -300 1283 1154 2152 124 0 20 chr13 9096843 9097142 -92776027 - AluSq SINE Alu -20 293 1 187 344 16 38 chr13 9097142 9097194 -92775975 - L3b LINE CR1 -429 1154 1102 246 293 38 19 chr13 9097581 9097687 -92775482 + L1MC/D LINE L1 5681 5788 -2020 282 306 28 9 chr13 9098349 9098457 -92774712 - MIR SINE MIR -66 142 33 1816 146 48 0 chr13 9101039 9101339 -92771830 + AluSg SINE Alu 1 313 0 606 226 0 0 chr13 9102471 9102595 -92770574 - MER3 DNA MER1_type -5 204 81 21 0 0 0 chr13 9102601 9102622 -92770547 + AT_rich Low_complexity Low_complexity 1 21 0 2549 51 0 0 chr13 9103433 9103728 -92769441 - AluY SINE Alu -16 295 1 600 266 43 18 chr13 9103959 9104177 -92768992 + MIR SINE MIR 33 249 -13 1145 164 65 11 chr13 9104235 9104497 -92768672 - L1MA4 LINE L1 0 6300 6025 208 308 0 0 chr13 9104978 9105043 -92768126 + MIR SINE MIR 176 240 -22 1192 132 11 0 chr13 9105133 9105307 -92767862 + AluSg/x SINE Alu 137 312 0 27 0 0 0 chr13 9105635 9105662 -92767507 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 9106076 9106113 -92767056 + GC_rich Low_complexity Low_complexity 1 37 0 453 264 39 0 chr13 9106263 9106392 -92766777 + MIR SINE MIR 80 213 -49 539 316 56 5 chr13 9106526 9106741 -92766428 - MIR SINE MIR -30 232 7 1705 174 36 0 chr13 9106756 9107031 -92766138 + AluJo SINE Alu 4 288 -24 1088 172 0 0 chr13 9107816 9107985 -92765184 - AluJo SINE Alu -133 179 11 2299 113 0 28 chr13 9108218 9108537 -92764632 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr13 9110269 9110292 -92762877 + AT_rich Low_complexity Low_complexity 1 23 0 410 279 70 6 chr13 9110320 9110478 -92762691 + MIR SINE MIR 81 248 -14 316 279 66 0 chr13 9110554 9110676 -92762493 + L2 LINE L2 2418 2547 -767 3746 126 11 42 chr13 9110677 9111313 -92761856 + L1MC1 LINE L1 5718 6333 0 23 33 0 0 chr13 9111377 9111407 -92761762 + AT_rich Low_complexity Low_complexity 1 30 0 629 299 65 31 chr13 9111611 9112029 -92761140 + L2 LINE L2 2874 3305 -8 2014 161 13 40 chr13 9112336 9112714 -92760455 + MLT1B LTR MaLR 1 368 -22 522 197 197 0 chr13 9112923 9113050 -92760119 + LTR16C LTR ERVL 98 249 -242 802 189 25 51 chr13 9113284 9113321 -92759848 + LTR16C LTR ERVL 299 335 -156 1400 214 57 52 chr13 9113321 9113709 -92759460 - MLT1B LTR MaLR 0 390 1 802 189 25 51 chr13 9113709 9113867 -92759302 + LTR16C LTR ERVL 335 489 -2 241 220 99 22 chr13 9113867 9113948 -92759221 - MER103 DNA DNA -21 145 58 1602 83 0 0 chr13 9113948 9114141 -92759028 - AluSg/x SINE Alu -9 303 111 234 333 9 29 chr13 9114966 9115071 -92758098 + MIR SINE MIR 141 243 -19 219 252 135 54 chr13 9115151 9115262 -92757907 + MIR SINE MIR 21 140 -68 277 172 183 97 chr13 9115601 9115787 -92757382 - MER112 DNA MER1_type -4 256 55 903 109 28 186 chr13 9115816 9115873 -92757296 + MER7A DNA MER2_type 1 65 -2973 2278 105 3 0 chr13 9115873 9116168 -92757001 + AluSq SINE Alu 1 296 -17 903 109 28 186 chr13 9116168 9116358 -92756811 + MER7A DNA MER2_type 65 207 -139 * 1138 193 16 0 chr13 9116357 9116549 -92756620 + MSTD LTR MaLR 202 396 0 1988 151 40 81 chr13 9116741 9116794 -92756375 - MSTA LTR MaLR 0 428 374 3068 65 0 0 chr13 9116794 9117178 -92755991 - L1PA7 LINE L1 -5 6149 5766 1988 151 40 81 chr13 9117178 9117568 -92755601 - MSTA LTR MaLR -54 374 3 269 303 15 53 chr13 9117655 9117787 -92755382 + MER5B DNA MER1_type 51 177 -1 1966 139 35 30 chr13 9118388 9118756 -92754413 - L1MB3 LINE L1 0 6183 5814 292 190 35 0 chr13 9118798 9118856 -92754313 - L1MB2 LINE L1 -2 6169 6110 2649 137 17 2 chr13 9118945 9119369 -92753800 - L1MB3 LINE L1 -77 6106 5677 1827 143 18 0 chr13 9119921 9120201 -92752968 + AluSx SINE Alu 11 295 -17 994 248 98 10 chr13 9120346 9120652 -92752517 + MER46C DNA MER2_type 6 338 0 219 125 0 0 chr13 9121166 9121206 -92751963 + (TG)n Simple_repeat Simple_repeat 2 41 0 1333 264 71 68 chr13 9122405 9123126 -92750043 - L1MEd LINE L1 -4864 1255 533 238 285 102 36 chr13 9124693 9124830 -92748339 - L2 LINE L2 -46 3267 3122 3703 127 114 28 chr13 9125605 9126327 -92746842 - LTR1 LTR ERV1 0 785 2 480 238 79 37 chr13 9126428 9126592 -92746577 - MER91A DNA MER1_type -25 171 1 228 347 42 11 chr13 9128647 9128742 -92744427 + L2 LINE L2 3214 3311 -2 527 300 82 67 chr13 9129416 9129746 -92743423 + L2 LINE L2 2926 3260 -12 1955 123 0 20 chr13 9129936 9130236 -92742933 - AluSx SINE Alu 0 312 19 1921 102 0 0 chr13 9130456 9130712 -92742457 + AluSg SINE Alu 1 256 -54 745 208 118 65 chr13 9130816 9131095 -92742074 + MLT1D LTR MaLR 133 426 -79 3090 145 45 0 chr13 9131111 9131642 -92741527 - L1MC2 LINE L1 -169 6175 5621 343 136 0 0 chr13 9131642 9131701 -92741468 + MLT1D LTR MaLR 439 497 -8 602 250 48 27 chr13 9131816 9132004 -92741165 - MIR SINE MIR -4 258 67 238 110 24 37 chr13 9132993 9133075 -92740094 + (CCCG)n Simple_repeat Simple_repeat 4 84 0 355 190 52 69 chr13 9134330 9134446 -92738723 - MER5A DNA MER1_type -72 117 4 478 287 117 74 chr13 9135218 9135636 -92737533 - MLT1K LTR MaLR -2 586 151 1716 257 18 14 chr13 9136399 9136773 -92736396 - L1ME3 LINE L1 0 6162 5784 1754 178 83 3 chr13 9136773 9137111 -92736058 - MLT1A1 LTR MaLR 0 365 1 1716 257 18 14 chr13 9137111 9137226 -92735943 - L1ME3 LINE L1 -378 5784 5671 301 259 147 9 chr13 9137543 9137659 -92735510 - L1ME4a LINE L1 0 6121 5990 24 0 0 0 chr13 9137659 9137683 -92735486 + AT_rich Low_complexity Low_complexity 1 24 0 325 122 0 0 chr13 9138092 9138141 -92735028 + AluSg SINE Alu 248 296 -6 2345 118 49 3 chr13 9139253 9139601 -92733568 + THE1B LTR MaLR 1 364 0 192 313 47 0 chr13 9139843 9139907 -92733262 + MIR SINE MIR 156 222 -40 187 261 144 65 chr13 9139982 9140135 -92733034 + L2 LINE L2 2918 3082 -190 2311 61 3 3 chr13 9140247 9140540 -92732629 - AluY SINE Alu -5 306 14 1395 216 77 70 chr13 9140578 9141100 -92732069 + MER39 LTR ERV1 1 707 0 304 339 24 24 chr13 9141102 9141147 -92732022 - MIR3 SINE MIR -45 163 119 1431 172 62 44 chr13 9141147 9141385 -92731784 + MER2 DNA MER2_type 1 248 -96 2037 114 10 3 chr13 9141385 9141684 -92731485 - AluSq SINE Alu -12 301 1 1431 172 62 44 chr13 9141684 9141783 -92731386 + MER2 DNA MER2_type 248 344 0 304 339 24 24 chr13 9141783 9141861 -92731308 - MIR3 SINE MIR -88 120 40 2199 115 0 0 chr13 9142091 9142396 -92730773 + AluSc SINE Alu 1 305 -4 210 256 23 0 chr13 9142476 9142519 -92730650 - L2 LINE L2 -17 3255 3212 683 244 105 60 chr13 9142826 9143342 -92729827 + MER34C LTR ERV1 47 585 0 405 0 0 0 chr13 9143514 9143559 -92729610 + (TG)n Simple_repeat Simple_repeat 1 45 0 1702 177 0 19 chr13 9144175 9144492 -92728677 + AluJo SINE Alu 2 312 0 786 260 100 74 chr13 9145172 9145672 -92727497 - LTR33 LTR ERVL -8 513 1 216 0 0 0 chr13 9145952 9145976 -92727193 + (CA)n Simple_repeat Simple_repeat 1 24 0 2019 123 7 0 chr13 9146701 9146994 -92726175 + AluSx SINE Alu 1 295 -17 426 212 142 9 chr13 9147088 9147201 -92725968 + MIR SINE MIR 95 222 -40 428 240 48 24 chr13 9147249 9147374 -92725795 - MLT1J2 LTR MaLR -56 394 267 315 233 283 0 chr13 9148064 9148184 -92724985 - MIR SINE MIR -16 246 93 420 188 228 7 chr13 9149737 9149886 -92723283 - MER20B DNA MER1_type -596 187 6 4040 274 75 35 chr13 9151107 9151869 -92721300 + L1MEc LINE L1 46 776 -5620 2136 106 3 0 chr13 9151869 9152161 -92721008 - AluSp SINE Alu -20 293 1 4040 274 75 35 chr13 9152161 9153132 -92720037 + L1MEc LINE L1 776 1849 -4547 203 177 32 16 chr13 9153132 9153194 -92719975 + T-rich Low_complexity Low_complexity 1 63 0 5907 45 11 8 chr13 9153231 9153966 -92719203 - SVA Other Other 0 1386 650 1181 197 18 18 chr13 9153984 9154258 -92718911 + L1MEc LINE L1 1836 2109 -4287 3113 135 32 50 chr13 9154519 9155154 -92718015 + MER4B LTR ERV1 2 779 0 325 309 80 37 chr13 9155343 9155376 -92717793 + L2 LINE L2 2896 2926 -346 1902 140 14 0 chr13 9155376 9155669 -92717500 - AluSx SINE Alu -13 299 3 325 309 80 37 chr13 9155669 9155823 -92717346 + L2 LINE L2 2926 3091 -181 999 168 37 47 chr13 9155899 9156089 -92717080 - MER5A DNA MER1_type 0 189 2 3640 201 99 8 chr13 9156139 9156260 -92716909 - MER21B LTR ERV1 -1 862 753 222 91 0 0 chr13 9156260 9156293 -92716876 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 3640 201 99 8 chr13 9156293 9156948 -92716221 - MER21B LTR ERV1 -110 753 15 282 29 0 0 chr13 9156950 9156985 -92716184 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 190 17 17 chr13 9156985 9157043 -92716126 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 336 253 12 24 chr13 9157062 9157145 -92716024 + L2 LINE L2 3232 3313 0 2735 135 108 62 chr13 9157687 9158271 -92714898 + LTR36 LTR ERV1 1 611 0 253 241 47 39 chr13 9159908 9160020 -92713149 + LTR50 LTR ERVL 436 791 -4 1480 194 3 25 chr13 9160471 9160785 -92712384 - AluJo SINE Alu -2 310 4 1363 114 0 0 chr13 9161874 9162067 -92711102 - AluSp SINE Alu -4 309 117 862 127 0 0 chr13 9162068 9162194 -92710975 + AluSq/x SINE Alu 2 127 -185 388 280 104 33 chr13 9162194 9162376 -92710793 - MIR SINE MIR -3 259 65 1611 210 113 12 chr13 9163960 9164384 -92708785 - MLT1C LTR MaLR 0 467 1 252 267 40 13 chr13 9164676 9164751 -92708418 - L2 LINE L2 -42 3230 3154 403 285 135 25 chr13 9165206 9165406 -92707763 + MIR SINE MIR 20 241 -21 256 320 122 15 chr13 9165638 9165835 -92707334 + L2 LINE L2 2521 2738 -576 1709 146 19 0 chr13 9165968 9166235 -92706934 + AluJb SINE Alu 1 272 -40 464 32 16 0 chr13 9166241 9166303 -92706866 + (TC)n Simple_repeat Simple_repeat 2 64 0 346 231 0 0 chr13 9166313 9166378 -92706791 - L1MC4 LINE L1 -1339 6703 6639 1822 188 29 6 chr13 9167229 9167568 -92705601 + MLT1A1 LTR MaLR 3 349 -16 1734 181 24 86 chr13 9167568 9167977 -92705192 - MSTD LTR MaLR 0 396 13 561 262 71 6 chr13 9168797 9168980 -92704189 + MIR SINE MIR 13 207 -55 2684 233 125 24 chr13 9169771 9170415 -92702754 + Zaphod DNA AcHobo 9 586 -3445 2215 106 3 7 chr13 9170415 9170716 -92702453 + AluSx SINE Alu 1 300 -12 2684 233 125 24 chr13 9170716 9171297 -92701872 + Zaphod DNA AcHobo 586 1352 -2679 1573 167 7 25 chr13 9171668 9171944 -92701225 - AluJb SINE Alu -14 298 28 2480 108 5 42 chr13 9172907 9172984 -92700185 - THE1B LTR MaLR 0 364 286 1926 123 3 69 chr13 9172984 9173323 -92699846 + AluSx SINE Alu 1 312 0 2480 108 5 42 chr13 9173323 9173623 -92699546 - THE1B LTR MaLR -78 286 1 266 115 19 0 chr13 9174185 9174237 -92698932 + L1MB2 LINE L1 5864 5916 -255 2330 187 6 39 chr13 9174435 9175017 -92698152 + L1M3 LINE L1 4930 5486 -694 2246 100 0 0 chr13 9175017 9175321 -92697848 + AluSc SINE Alu 1 304 0 2330 187 6 39 chr13 9175321 9175444 -92697725 + L1M3 LINE L1 5486 5612 -568 2426 90 3 0 chr13 9175444 9175755 -92697414 + AluSx SINE Alu 1 312 0 242 161 34 186 chr13 9176277 9176341 -92696828 + MER94 DNA DNA 1 41 -93 2964 13 0 0 chr13 9176341 9176659 -92696510 - AluYb8 SINE Alu 0 318 1 242 161 34 186 chr13 9176659 9176712 -92696457 + MER94 DNA DNA 41 100 -34 221 192 164 14 chr13 9176842 9176915 -92696254 - MIR3 SINE MIR -7 201 118 24 32 0 0 chr13 9176968 9176999 -92696170 + AT_rich Low_complexity Low_complexity 1 31 0 2168 112 3 0 chr13 9177000 9177286 -92695883 - AluSp SINE Alu -26 287 1 2079 158 0 0 chr13 9177887 9178197 -92694972 + AluJb SINE Alu 1 310 -2 426 304 121 18 chr13 9178224 9178448 -92694721 + MIR SINE MIR 16 262 0 933 272 50 53 chr13 9179579 9180059 -92693110 - MLT1H LTR MaLR 0 549 1 213 321 220 0 chr13 9180693 9180802 -92692367 + MIR SINE MIR 17 149 -113 1991 146 125 31 chr13 9181577 9181968 -92691201 - MSTA LTR MaLR 0 428 1 46 83 0 0 chr13 9183061 9183170 -92689999 + AT_rich Low_complexity Low_complexity 1 109 0 1819 154 6 35 chr13 9183549 9183860 -92689309 + AluJo SINE Alu 2 303 -9 205 329 0 13 chr13 9184008 9184084 -92689085 + L2 LINE L2 3197 3271 -1 2561 180 75 58 chr13 9186512 9187096 -92686073 - MER7C DNA MER2_type -1 601 8 583 245 65 113 chr13 9187125 9187558 -92685611 + L1ME LINE L1 6 417 -5653 1725 253 99 32 chr13 9187576 9188524 -92684645 + L1ME LINE L1 498 1481 -4599 308 133 0 0 chr13 9188524 9188569 -92684600 + Alu SINE Alu 1 45 -255 431 246 7 51 chr13 9191136 9191274 -92681895 + MIR SINE MIR 81 212 -50 2191 125 6 10 chr13 9191389 9191702 -92681467 + AluSx SINE Alu 1 312 0 504 309 46 60 chr13 9191704 9191903 -92681266 + L1ME LINE L1 1509 1709 -4552 2276 92 0 0 chr13 9191903 9192234 -92680935 + AluY SINE Alu 1 331 0 504 309 46 60 chr13 9192234 9192447 -92680722 + L1ME LINE L1 1709 1916 -4345 * 1332 129 45 140 chr13 9192445 9192532 -92680637 - L1MB3 LINE L1 0 6183 6089 207 0 0 0 chr13 9192532 9192555 -92680614 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1643 181 15 8 chr13 9192555 9192821 -92680348 - AluJo SINE Alu -30 282 15 1332 129 45 140 chr13 9192821 9193055 -92680114 - L1MB3 LINE L1 -93 6090 5896 2385 95 0 0 chr13 9193055 9193351 -92679818 - AluY SINE Alu -15 296 1 1332 129 45 140 chr13 9193351 9193384 -92679785 - L1MB3 LINE L1 -287 5896 5861 * 5489 169 29 38 chr13 9193376 9194813 -92678356 - L1M4 LINE L1 -3748 2634 23 2034 253 70 27 chr13 9194835 9195378 -92677791 + L1ME LINE L1 1949 2554 -3526 2405 72 0 3 chr13 9195378 9195684 -92677485 - AluY SINE Alu -6 305 1 2034 253 70 27 chr13 9195684 9195976 -92677193 + L1ME LINE L1 2554 2832 -3248 209 194 0 0 chr13 9196542 9196578 -92676591 + T-rich Low_complexity Low_complexity 4 39 0 202 231 0 0 chr13 9197666 9197705 -92675464 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 2203 103 7 0 chr13 9197920 9198210 -92674959 - AluSx SINE Alu -20 292 1 269 253 32 53 chr13 9198348 9198443 -92674726 + MIR SINE MIR 48 140 -122 22 0 0 0 chr13 9199620 9199642 -92673527 + AT_rich Low_complexity Low_complexity 1 22 0 231 296 0 0 chr13 9202009 9202080 -92671089 + T-rich Low_complexity Low_complexity 1 71 0 2263 246 97 132 chr13 9202537 9203642 -92669527 + L2 LINE L2 1290 2432 -881 1887 206 52 48 chr13 9203642 9204143 -92669026 - MLT1D LTR MaLR -2 503 1 2263 246 97 132 chr13 9204143 9204466 -92668703 + L2 LINE L2 2432 2765 -548 1534 182 69 54 chr13 9204466 9204856 -92668313 + MSTD LTR MaLR 1 396 0 2263 246 97 132 chr13 9204856 9205505 -92667664 + L2 LINE L2 2765 3313 0 731 263 34 17 chr13 9205761 9205997 -92667172 - MIR SINE MIR -3 259 20 220 304 27 18 chr13 9206621 9206733 -92666436 + MIR SINE MIR 20 132 -130 403 242 28 95 chr13 9208861 9209323 -92663846 + L1ME4a LINE L1 5689 6118 -3 811 131 33 26 chr13 9209337 9209490 -92663679 - L1MA9 LINE L1 -2 6310 6157 225 0 0 0 chr13 9209490 9209515 -92663654 + (A)n Simple_repeat Simple_repeat 1 25 0 2465 80 7 0 chr13 9209580 9209880 -92663289 + AluY SINE Alu 1 302 -9 310 328 79 18 chr13 9210363 9210592 -92662577 + L1ME LINE L1 5544 5786 -335 3655 150 54 42 chr13 9210604 9211322 -92661847 - LTR8A LTR ERV1 0 727 1 23 33 0 0 chr13 9211382 9211412 -92661757 + AT_rich Low_complexity Low_complexity 1 30 0 611 214 0 15 chr13 9211562 9211693 -92661476 + MIR SINE MIR 32 160 -102 3630 120 62 9 chr13 9211698 9212275 -92660894 - MER4B LTR ERV1 -2 608 1 4855 99 22 12 chr13 9212585 9213269 -92659900 - LTR8 LTR ERV1 0 691 1 320 131 0 16 chr13 9213279 9213340 -92659829 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 180 0 0 0 chr13 9213350 9213370 -92659799 + (TCTA)n Simple_repeat Simple_repeat 1 20 0 5975 55 16 4 chr13 9213811 9214568 -92658601 + MER4E LTR ERV1 1 766 0 282 276 28 55 chr13 9214568 9214702 -92658467 - MER5A DNA MER1_type -37 152 21 3935 38 0 19 chr13 9214844 9215324 -92657845 - L1PA5 LINE L1 0 6154 5684 203 318 0 23 chr13 9218390 9218478 -92654691 + MIR SINE MIR 85 170 -92 228 242 45 0 chr13 9219151 9219217 -92653952 + MIR3 SINE MIR 115 183 -25 258 246 43 0 chr13 9220433 9220502 -92652667 + MLT1J LTR MaLR 114 185 -326 1110 132 0 30 chr13 9220708 9220905 -92652264 - L1PB1 LINE L1 0 6151 5961 228 278 100 11 chr13 9221022 9221112 -92652057 + L2 LINE L2 3150 3247 -66 456 248 156 0 chr13 9222471 9222612 -92650557 + MIR SINE MIR 100 262 0 2320 124 33 28 chr13 9222766 9223128 -92650041 - THE1B LTR MaLR 0 364 1 559 299 32 16 chr13 9223912 9224099 -92649070 + MIR3 SINE MIR 16 205 -3 2545 99 14 8 chr13 9224413 9224766 -92648403 - THE1A LTR MaLR 0 355 1 1578 203 7 14 chr13 9224862 9225158 -92648011 - AluJb SINE Alu -18 294 1 237 337 71 0 chr13 9226982 9227080 -92646089 + L2 LINE L2 3168 3272 0 1297 293 82 7 chr13 9228559 9229024 -92644145 + MLT1J LTR MaLR 7 506 -5 438 276 53 58 chr13 9229037 9229280 -92643889 + LTR33 LTR ERVL 83 324 -197 238 321 43 41 chr13 9230047 9230227 -92642942 + L2 LINE L2 2782 2965 -307 948 163 0 109 chr13 9230229 9230450 -92642719 + MER3 DNA MER1_type 10 206 -3 602 311 91 76 chr13 9230708 9231091 -92642078 + L2 LINE L2 2854 3242 -30 287 49 24 0 chr13 9231284 9231325 -92641844 + (GA)n Simple_repeat Simple_repeat 1 42 0 533 294 169 47 chr13 9232229 9232908 -92640261 + HAL1 LINE L1 2 796 -1711 1104 142 73 10 chr13 9232908 9233112 -92640057 - MER20 DNA MER1_type 0 219 3 533 294 169 47 chr13 9233112 9233239 -92639930 + HAL1 LINE L1 796 906 -1601 256 223 0 0 chr13 9233686 9233764 -92639405 + L1MC5 LINE L1 7837 8014 -28 1559 203 45 0 chr13 9233773 9234063 -92639106 - AluJo SINE Alu -9 303 1 191 223 96 128 chr13 9234255 9234349 -92638820 + L2 LINE L2 2955 3045 -227 395 220 30 20 chr13 9234419 9234519 -92638650 + MER5A DNA MER1_type 86 186 -3 321 243 118 15 chr13 9234593 9234729 -92638440 + L1ME4a LINE L1 5940 6089 -32 1852 154 0 18 chr13 9236714 9237033 -92636136 - AluJo SINE Alu 0 314 1 1112 132 0 2 chr13 9237522 9237760 -92635409 + AluSx SINE Alu 2 273 -39 189 74 0 0 chr13 9237769 9237796 -92635373 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2348 53 0 7 chr13 9238033 9238315 -92634854 - AluY SINE Alu -4 307 28 857 10 10 0 chr13 9238682 9238784 -92634385 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 23 33 0 0 chr13 9239413 9239443 -92633726 + AT_rich Low_complexity Low_complexity 1 30 0 712 251 55 64 chr13 9239659 9239989 -92633180 - L1ME3 LINE L1 0 6162 5836 812 164 8 8 chr13 9240550 9240684 -92632485 - AluJo SINE Alu -178 134 1 1655 157 61 14 chr13 9240691 9240971 -92632198 - AluJb SINE Alu -19 293 1 2414 100 0 0 chr13 9241582 9241881 -92631288 - AluSx SINE Alu -13 299 1 184 236 112 45 chr13 9241945 9242034 -92631135 - L2 LINE L2 -10 3303 3209 191 262 0 0 chr13 9242135 9242177 -92630992 + L2 LINE L2 3261 3302 -11 523 276 72 0 chr13 9242385 9242537 -92630632 - MIR SINE MIR -16 246 84 658 280 70 5 chr13 9243441 9243655 -92629514 + MIR SINE MIR 3 230 -32 364 179 0 0 chr13 9244374 9244430 -92628739 - L2 LINE L2 0 3272 3217 * 416 214 232 36 chr13 9244423 9244591 -92628578 + MIR SINE MIR 48 248 -14 952 183 24 28 chr13 9245364 9245577 -92627592 + MER20 DNA MER1_type 1 212 -7 194 221 150 26 chr13 9246083 9246196 -92626973 + L2 LINE L2 2148 2274 -1040 2564 62 0 7 chr13 9246547 9246856 -92626313 - AluY SINE Alu -4 307 1 233 250 67 50 chr13 9247024 9247144 -92626025 - MIR SINE MIR -65 143 22 376 179 0 0 chr13 9248013 9248080 -92625089 - L1P5 LINE L1 -522 5634 5568 1926 106 0 19 chr13 9248435 9248700 -92624469 + AluSx SINE Alu 1 260 -52 394 333 59 15 chr13 9249591 9249726 -92623443 + MIR SINE MIR 9 149 -113 1833 177 0 23 chr13 9249768 9250078 -92623091 + AluJb SINE Alu 1 303 -9 200 274 48 0 chr13 9250238 9250300 -92622869 + MIR SINE MIR 197 261 -1 4480 187 26 19 chr13 9250984 9251685 -92621484 - L1MB3 LINE L1 -3 6180 5486 210 37 0 0 chr13 9251685 9251712 -92621457 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4480 187 26 19 chr13 9251712 9252506 -92620663 - L1MB3 LINE L1 -697 5486 4675 457 261 52 0 chr13 9252516 9252575 -92620594 + MIR SINE MIR 117 171 -91 234 0 0 0 chr13 9252575 9252601 -92620568 + (TG)n Simple_repeat Simple_repeat 2 27 0 457 261 52 0 chr13 9252601 9252656 -92620513 + MIR SINE MIR 171 237 -25 27 49 0 0 chr13 9252656 9252697 -92620472 + AT_rich Low_complexity Low_complexity 1 41 0 296 282 55 74 chr13 9252898 9253100 -92620069 + MIR SINE MIR 52 249 -13 1968 134 41 0 chr13 9253648 9253938 -92619231 - AluSx SINE Alu -10 302 1 21 57 0 0 chr13 9254560 9254595 -92618574 + AT_rich Low_complexity Low_complexity 1 35 0 203 156 0 0 chr13 9255080 9255112 -92618057 + (CA)n Simple_repeat Simple_repeat 1 32 0 397 257 112 33 chr13 9255735 9255887 -92617282 + L1ME4a LINE L1 5942 6105 -16 341 290 131 16 chr13 9256272 9256455 -92616714 - L1ME4a LINE L1 -209 5912 5709 256 254 0 56 chr13 9256472 9256543 -92616626 - L2 LINE L2 0 3272 3206 1357 199 38 72 chr13 9256673 9257064 -92616105 + MLT1B LTR MaLR 1 378 -12 216 196 89 0 chr13 9257068 9257124 -92616045 - L2 LINE L2 -266 3047 2987 364 347 57 17 chr13 9257941 9258117 -92615052 - L2 LINE L2 -609 2705 2523 * 803 304 149 9 chr13 9258108 9258565 -92614604 + L2 LINE L2 2763 3297 -16 373 270 56 51 chr13 9258555 9258751 -92614418 - L2 LINE L2 -793 2521 2325 * 1267 154 139 4 chr13 9258752 9259019 -92614150 + MLT1D LTR MaLR 1 303 -202 480 117 0 0 chr13 9259994 9260071 -92613098 + (CA)n Simple_repeat Simple_repeat 2 78 0 480 81 0 0 chr13 9260958 9261032 -92612137 + (TC)n Simple_repeat Simple_repeat 1 74 0 1594 182 45 18 chr13 9261240 9261730 -92611439 - MER74A LTR ERVL 0 558 1 215 171 98 0 chr13 9261880 9261921 -92611248 + L2 LINE L2 3210 3254 -18 317 300 99 41 chr13 9261943 9262186 -92610983 + L2 LINE L2 3002 3258 -14 333 287 100 34 chr13 9263231 9263486 -92609683 - L2 LINE L2 0 3313 2967 284 255 245 0 chr13 9263664 9263762 -92609407 - MER5A DNA MER1_type -2 187 66 2039 125 7 0 chr13 9263889 9264198 -92608971 + AluSx SINE Alu 1 311 0 302 28 0 0 chr13 9264202 9264238 -92608931 + AluSg/x SINE Alu 75 110 -190 569 148 0 0 chr13 9264239 9264320 -92608849 - AluS SINE Alu -229 83 3 1005 204 49 172 chr13 9264343 9264588 -92608581 - L1MC4 LINE L1 -555 7487 7213 1433 228 30 15 chr13 9264588 9264921 -92608248 - MER58B DNA MER1_type -3 338 1 1005 204 49 172 chr13 9264921 9265309 -92607860 - L1MC4 LINE L1 -829 7213 6779 216 0 0 0 chr13 9265309 9265333 -92607836 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1796 115 53 0 chr13 9265339 9265582 -92607587 - AluSg SINE Alu -48 262 7 1005 204 49 172 chr13 9265582 9265736 -92607433 - L1MC4 LINE L1 -1081 6961 6790 278 197 0 66 chr13 9265742 9265818 -92607351 + MER116 DNA Mariner 10 80 0 379 330 67 32 chr13 9265822 9265913 -92607256 - L1MC4a LINE L1 -1105 6703 6617 1898 158 24 0 chr13 9265913 9266210 -92606959 - AluSx SINE Alu -8 304 1 379 330 67 32 chr13 9266210 9266403 -92606766 - L1MC4a LINE L1 -1191 6617 6409 2465 71 0 19 chr13 9266433 9266741 -92606428 + AluY SINE Alu 1 302 -9 180 0 0 0 chr13 9266806 9266826 -92606343 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 361 231 99 0 chr13 9267218 9267309 -92605860 - MIR SINE MIR -71 191 92 963 246 32 7 chr13 9267999 9268276 -92604893 + L1PB4 LINE L1 5651 5934 -222 * 2427 174 72 18 chr13 9268035 9268594 -92604575 + L1MA9 LINE L1 5686 6274 -38 2501 84 10 0 chr13 9269240 9269549 -92603620 + AluSq SINE Alu 1 312 -1 2126 102 3 0 chr13 9271206 9271525 -92601644 - AluSx SINE Alu 0 320 1 492 273 78 7 chr13 9271688 9271842 -92601327 + L1ME4a LINE L1 5926 6090 -31 195 325 12 0 chr13 9271863 9271962 -92601207 - MIR SINE MIR -2 260 161 1637 111 4 4 chr13 9271991 9272216 -92600953 + AluSx SINE Alu 1 225 -87 272 269 28 0 chr13 9272233 9272341 -92600828 + L1M4 LINE L1 4301 4411 -1735 1742 122 0 0 chr13 9272344 9272574 -92600595 + AluSx SINE Alu 1 230 -82 3192 130 16 34 chr13 9272574 9273127 -92600042 - MER49 LTR ERV1 -380 543 1 381 224 12 12 chr13 9273144 9273229 -92599940 - MIR SINE MIR -115 147 63 2479 78 0 10 chr13 9273773 9274080 -92599089 + AluY SINE Alu 1 304 -7 497 248 118 6 chr13 9274175 9274336 -92598833 + MIR SINE MIR 79 257 -5 1102 173 51 19 chr13 9274441 9274655 -92598514 + MER58A DNA MER1_type 1 221 -3 2229 118 6 13 chr13 9274824 9275230 -92597939 - AluSp SINE Alu 0 404 1 276 197 0 70 chr13 9275593 9275627 -92597542 + GA-rich Low_complexity Low_complexity 2 30 -37 1883 92 0 34 chr13 9275627 9275889 -92597280 + AluSq SINE Alu 1 253 -60 276 197 0 70 chr13 9275889 9275925 -92597244 + GA-rich Low_complexity Low_complexity 30 67 0 1573 110 3 76 chr13 9276274 9276678 -92596491 + Charlie3 DNA MER1_type 1 2712 0 1186 136 0 0 chr13 9276693 9276869 -92596300 + AluSg/x SINE Alu 134 309 -1 248 304 71 9 chr13 9277152 9277264 -92595905 - MIR SINE MIR -131 131 13 257 299 62 21 chr13 9277473 9277570 -92595599 + MIR SINE MIR 111 211 -51 2276 95 0 0 chr13 9277583 9277904 -92595265 + AluSx SINE Alu 1 321 0 360 302 216 0 chr13 9278006 9278145 -92595024 - L2 LINE L2 0 3272 3104 335 299 76 45 chr13 9278838 9278953 -92594216 - MIR SINE MIR -87 175 52 1340 142 173 11 chr13 9278953 9279213 -92593956 - AluJo SINE Alu 0 302 1 335 299 76 45 chr13 9279213 9279254 -92593915 - MIR SINE MIR -210 52 14 749 268 52 28 chr13 9279377 9279627 -92593542 + L2 LINE L2 3058 3313 0 2323 78 3 7 chr13 9281408 9281701 -92591468 + AluSx SINE Alu 1 292 -20 739 205 82 69 chr13 9281911 9282103 -92591066 + MLT1D LTR MaLR 2 190 -200 823 148 0 52 chr13 9282103 9282238 -92590931 + FLAM_A SINE Alu 2 129 -4 739 205 82 69 chr13 9282238 9282419 -92590750 + MLT1D LTR MaLR 190 390 0 190 333 72 0 chr13 9282822 9282891 -92590278 + L2 LINE L2 3159 3232 -40 300 228 13 51 chr13 9283661 9283740 -92589429 - L1MC5 LINE L1 -243 7718 7643 852 186 0 0 chr13 9283795 9283919 -92589250 + FLAM_C SINE Alu 1 124 -19 24 53 0 0 chr13 9283919 9283957 -92589212 + AT_rich Low_complexity Low_complexity 1 38 0 218 32 32 0 chr13 9283969 9284000 -92589169 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1004 98 8 0 chr13 9284015 9284147 -92589022 + AluJb SINE Alu 156 288 -24 325 330 105 50 chr13 9287124 9287962 -92585207 + L2 LINE L2 859 1742 -1572 431 258 64 85 chr13 9288465 9288600 -92584569 - MIR SINE MIR -11 251 125 2709 155 31 0 chr13 9288600 9289019 -92584150 + MSTB1 LTR MaLR 1 432 0 431 258 64 85 chr13 9289019 9289112 -92584057 - MIR SINE MIR -137 125 32 260 277 160 25 chr13 9289157 9289276 -92583893 + L2 LINE L2 3138 3272 0 2232 119 48 23 chr13 9290233 9290586 -92582583 - THE1B LTR MaLR 0 364 3 852 189 7 0 chr13 9290997 9291145 -92582024 + FRAM SINE Alu 1 149 -17 436 292 32 39 chr13 9291825 9291979 -92581190 - L2 LINE L2 0 3313 3161 1799 158 17 69 chr13 9292425 9292844 -92580325 + MER57A LTR ERV1 7 403 0 1720 112 120 12 chr13 9293311 9293570 -92579599 + AluSg SINE Alu 3 289 -21 1641 120 8 37 chr13 9293583 9293825 -92579344 + AluSg SINE Alu 56 290 -20 189 246 35 35 chr13 9294783 9294840 -92578329 - L2 LINE L2 -28 3285 3229 278 294 48 63 chr13 9295253 9295379 -92577790 + MIR3 SINE MIR 55 178 -30 2121 112 4 0 chr13 9295536 9295812 -92577357 + AluSx SINE Alu 1 277 -35 216 0 0 0 chr13 9295816 9295840 -92577329 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 413 293 70 70 chr13 9296029 9296329 -92576840 + HAL1 LINE L1 1313 1612 -895 1236 209 116 16 chr13 9296330 9296950 -92576219 + L1ME2 LINE L1 5357 6087 -77 189 74 0 0 chr13 9296952 9296979 -92576190 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2385 109 3 0 chr13 9297009 9297360 -92575809 - AluSq SINE Alu 0 352 1 22 0 0 0 chr13 9297707 9297729 -92575440 + AT_rich Low_complexity Low_complexity 1 22 0 2142 128 0 0 chr13 9297847 9298137 -92575032 - AluSx SINE Alu -22 290 1 231 243 40 14 chr13 9298335 9298409 -92574760 + HAL1b LINE L1 828 903 -445 219 211 0 39 chr13 9298622 9298674 -92574495 + GA-rich Low_complexity Low_complexity 4 53 0 1190 124 5 57 chr13 9298919 9299136 -92574033 + AluJb SINE Alu 101 307 0 195 139 70 0 chr13 9299266 9299309 -92573860 - L2 LINE L2 -2 3311 3266 2245 83 7 0 chr13 9300964 9301269 -92571900 + AluSc SINE Alu 1 307 0 1518 224 62 3 chr13 9301370 9301722 -92571447 - MLT1A2 LTR MaLR -1 373 1 211 27 27 27 chr13 9302282 9302319 -92570850 + (CTGGGG)n Simple_repeat Simple_repeat 1 37 0 519 303 20 13 chr13 9305052 9305204 -92567965 + L2 LINE L2 3161 3313 0 512 107 0 0 chr13 9305833 9305908 -92567261 - MADE1 DNA Mariner 0 80 6 391 141 31 0 chr13 9305949 9306013 -92567156 - MER5B DNA MER1_type 0 178 113 2415 74 0 7 chr13 9306013 9306309 -92566860 + AluY SINE Alu 1 294 -17 590 95 0 0 chr13 9306607 9306688 -92566481 + THE1B LTR MaLR 56 136 -228 774 225 83 94 chr13 9306688 9307123 -92566046 - LTR7 LTR ERV1 0 450 21 1363 116 35 30 chr13 9307153 9307385 -92565784 + THE1B LTR MaLR 132 364 0 233 127 109 0 chr13 9307837 9307892 -92565277 - L1M4 LINE L1 -569 5615 5555 228 114 0 0 chr13 9307892 9307927 -92565242 - AluJo SINE Alu -8 294 260 1131 191 17 17 chr13 9307962 9308192 -92564977 + LTR32 LTR ERVL 232 461 -10 1590 175 15 4 chr13 9308199 9308462 -92564707 - AluJo SINE Alu -46 266 1 450 175 0 0 chr13 9308462 9308542 -92564627 - L1M4 LINE L1 -609 5565 5486 284 192 5 0 chr13 9309184 9309254 -92563915 - L1P LINE L1 -798 5370 5298 751 219 0 0 chr13 9309390 9309554 -92563615 - L1M4 LINE L1 -844 5302 5139 2084 105 3 20 chr13 9309965 9310259 -92562910 - AluSx SINE Alu -23 289 1 1784 152 43 23 chr13 9312948 9313251 -92559918 + AluJo SINE Alu 1 309 -3 2375 88 0 3 chr13 9314538 9314835 -92558334 + AluSx SINE Alu 1 296 -16 209 182 288 0 chr13 9315306 9315372 -92557797 - MIR SINE MIR 0 262 178 244 200 0 0 chr13 9315378 9315428 -92557741 - FLAM_C SINE Alu 0 164 115 961 143 0 0 chr13 9315452 9315585 -92557584 - FLAM_C SINE Alu 0 133 1 458 312 22 0 chr13 9315610 9315748 -92557421 - MIR SINE MIR -109 153 13 383 242 152 0 chr13 9315965 9316064 -92557105 + L2 LINE L2 3200 3313 0 1033 217 4 25 chr13 9316431 9316666 -92556503 + MLT1A1 LTR MaLR 1 230 -135 872 142 26 13 chr13 9316751 9316906 -92556263 + MLT1A1 LTR MaLR 208 364 -1 258 240 110 20 chr13 9318053 9318199 -92554970 + MER117 DNA MER1_type 3 161 -36 416 272 225 0 chr13 9318451 9318620 -92554549 + MIR SINE MIR 1 207 -55 180 339 119 53 chr13 9318741 9318968 -92554201 + MIR SINE MIR 10 251 -11 3001 144 38 6 chr13 9319003 9319529 -92553640 - L1MC3 LINE L1 -6 7779 7237 1256 174 161 156 chr13 9319529 9319570 -92553599 - MLT1A1 LTR MaLR 0 396 357 2521 76 3 6 chr13 9319570 9319884 -92553285 + AluSp SINE Alu 1 313 0 1256 174 161 156 chr13 9319884 9320234 -92552935 - MLT1A1 LTR MaLR -39 357 3 2007 168 26 19 chr13 9320234 9320651 -92552518 - L1MC3 LINE L1 -542 7243 6824 4075 179 68 28 chr13 9320657 9321595 -92551574 - L1MD2 LINE L1 -11 6348 5373 317 234 133 32 chr13 9322400 9322558 -92550611 + MLT1J LTR MaLR 331 504 -7 187 331 35 84 chr13 9323273 9323415 -92549754 + MIR SINE MIR 20 154 -108 2773 69 11 6 chr13 9324253 9324617 -92548552 - L1PA8 LINE L1 -2 6170 5805 258 257 148 29 chr13 9324901 9325016 -92548153 + MIR SINE MIR 26 153 -55 1370 203 59 59 chr13 9326291 9326749 -92546420 - LTR40b LTR ERVL -2 460 3 401 257 298 6 chr13 9327668 9327731 -92545438 - L2 LINE L2 -135 3178 3135 2240 135 0 0 chr13 9327731 9328043 -92545126 + AluSx SINE Alu 1 312 0 401 257 298 6 chr13 9328043 9328406 -92544763 - L2 LINE L2 -178 3135 2618 233 29 29 0 chr13 9328657 9328691 -92544478 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2341 102 0 31 chr13 9328698 9329020 -92544149 + AluSq SINE Alu 1 312 -1 350 277 0 11 chr13 9329936 9330030 -92543139 - LTR67 LTR ERVL 0 557 465 781 260 111 50 chr13 9330864 9331592 -92541577 + L1MDa LINE L1 1316 2127 -4452 560 261 79 10 chr13 9331645 9332160 -92541009 + L1MDa LINE L1 2202 2724 -3816 198 172 230 23 chr13 9332161 9332248 -92540921 + L3b LINE CR1 1364 1468 -115 548 128 0 0 chr13 9332930 9333024 -92540145 + AluJ/FRAM SINE Alu 218 311 -1 678 158 8 17 chr13 9333161 9333281 -92539888 + FLAM_A SINE Alu 1 119 -14 186 133 0 0 chr13 9333281 9333311 -92539858 + (CATA)n Simple_repeat Simple_repeat 3 32 0 864 261 9 9 chr13 9334005 9334220 -92538949 - MIR SINE MIR 0 262 48 444 266 93 0 chr13 9334433 9334572 -92538597 + MIR SINE MIR 85 236 -26 2129 117 13 3 chr13 9334641 9334939 -92538230 + AluSx SINE Alu 1 301 -11 566 313 22 28 chr13 9335299 9335478 -92537691 + MER91A DNA MER1_type 1 178 -18 1833 186 67 6 chr13 9336614 9336958 -92536211 + MLT1A1 LTR MaLR 1 365 0 2361 142 32 5 chr13 9337583 9337991 -92535178 + MSTB1 LTR MaLR 1 419 -13 8003 198 41 25 chr13 9337997 9338202 -92534967 + MSTB1-int LTR MaLR 1 201 -1450 1527 194 0 22 chr13 9338202 9338480 -92534689 + AluJb SINE Alu 30 301 -11 8003 198 41 25 chr13 9338480 9339898 -92533271 + MSTB1-int LTR MaLR 201 1651 0 2700 137 16 32 chr13 9339898 9340337 -92532832 + MSTB1 LTR MaLR 1 432 0 191 184 66 92 chr13 9340428 9340504 -92532665 + L2 LINE L2 2741 2814 -500 445 161 75 46 chr13 9340914 9341022 -92532147 + MLT1J1 LTR MaLR 19 129 -321 326 295 109 13 chr13 9341003 9341159 -92532010 + MLT1J2 LTR MaLR 156 326 -124 * 816 173 13 26 chr13 9341181 9341337 -92531832 - MER70A LTR ERVL 0 472 319 1095 185 129 29 chr13 9341338 9341500 -92531669 - THE1C LTR MaLR 0 375 231 3882 97 7 9 chr13 9341500 9342048 -92531121 - L1PA8 LINE L1 -5 6167 5621 1095 185 129 29 chr13 9342048 9342226 -92530943 - THE1C LTR MaLR -144 231 1 1362 167 3 167 chr13 9342228 9342611 -92530558 - MER70B LTR ERVL -258 320 1 1689 161 3 56 chr13 9342655 9342803 -92530366 + AluJo SINE Alu 1 124 -188 1960 169 3 0 chr13 9342803 9343099 -92530070 + AluSx SINE Alu 1 297 -15 1689 161 3 56 chr13 9343099 9343273 -92529896 + AluJo SINE Alu 124 306 -6 1912 204 19 69 chr13 9343868 9344389 -92528780 + MLT1E2 LTR MaLR 2 496 -130 1440 337 54 17 chr13 9344398 9345172 -92527997 + HERV16 LTR ERVL 2356 3091 -1905 2308 125 0 0 chr13 9345798 9346110 -92527059 - AluSx SINE Alu 0 312 1 378 322 25 0 chr13 9347127 9347248 -92525921 - L2 LINE L2 -1 3312 3189 426 39 0 0 chr13 9347408 9347460 -92525709 + (TG)n Simple_repeat Simple_repeat 2 53 0 503 306 48 68 chr13 9347464 9347774 -92525395 + L3 LINE CR1 369 672 -905 3653 213 49 21 chr13 9347825 9348606 -92524563 + L1MB8 LINE L1 4079 5001 -1173 236 77 26 0 chr13 9348606 9348645 -92524524 + (CA)n Simple_repeat Simple_repeat 1 40 0 3653 213 49 21 chr13 9348645 9349178 -92523991 + L1MB8 LINE L1 5001 5518 -656 2923 175 15 17 chr13 9349184 9349768 -92523401 + L1MB8 LINE L1 5591 6173 -5 283 162 0 29 chr13 9349769 9349837 -92523332 + GA-rich Low_complexity Low_complexity 2 67 0 2168 122 3 3 chr13 9350155 9350451 -92522718 - AluSx SINE Alu -16 296 1 2300 114 74 10 chr13 9350606 9351010 -92522159 + L1MB3 LINE L1 5752 6181 -2 922 165 18 18 chr13 9351789 9351953 -92521216 + FRAM SINE Alu 2 165 -1 2354 109 0 0 chr13 9352171 9352473 -92520696 + AluSg SINE Alu 1 302 -8 194 318 47 56 chr13 9353698 9353805 -92519364 + L2 LINE L2 3202 3307 -6 2109 108 4 0 chr13 9353994 9354292 -92518877 - AluSc SINE Alu 0 299 1 213 350 80 22 chr13 9357366 9357503 -92515666 - MER91A DNA MER1_type 0 196 52 21 36 0 0 chr13 9359002 9359030 -92514139 + AT_rich Low_complexity Low_complexity 1 28 0 309 261 169 8 chr13 9362228 9362358 -92510811 + MIR SINE MIR 8 158 -104 192 340 136 19 chr13 9362610 9362772 -92510397 - MIR SINE MIR -72 190 10 2542 194 18 6 chr13 9363190 9363685 -92509484 + L1MB3 LINE L1 5683 6183 0 366 286 11 0 chr13 9363809 9363900 -92509269 + MER91A DNA MER1_type 91 182 -14 261 352 47 16 chr13 9363969 9364097 -92509072 + L2 LINE L2 3132 3263 -9 250 244 0 39 chr13 9364097 9364175 -92508994 + GA-rich Low_complexity Low_complexity 1 75 0 183 80 0 0 chr13 9364531 9364556 -92508613 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 824 172 0 15 chr13 9364559 9364693 -92508476 - AluJo SINE Alu -178 134 3 199 200 22 0 chr13 9366060 9366105 -92507064 + MIR SINE MIR 90 135 -73 1208 247 71 40 chr13 9366500 9366878 -92506291 - L1ME3A LINE L1 -5 6165 5769 1664 159 22 57 chr13 9366878 9367193 -92505976 - AluJo SINE Alu -6 306 3 1208 247 71 40 chr13 9367193 9367235 -92505934 - L1ME3A LINE L1 -401 5769 5730 919 196 0 0 chr13 9368275 9368433 -92504736 + FAM SINE Alu 1 158 -17 372 59 0 0 chr13 9368435 9368486 -92504683 + (CA)n Simple_repeat Simple_repeat 1 51 0 255 102 82 10 chr13 9370561 9370659 -92502510 + (CA)n Simple_repeat Simple_repeat 2 106 0 407 175 305 19 chr13 9370916 9371070 -92502099 + MER69 DNA AcHobo 2189 2386 -140 366 181 42 0 chr13 9371079 9371151 -92502018 + FLAM_A SINE Alu 52 126 -7 470 98 85 12 chr13 9371167 9371331 -92501838 + (CA)n Simple_repeat Simple_repeat 1 176 0 908 163 60 0 chr13 9371331 9371497 -92501672 + AluJo SINE Alu 127 302 -10 272 178 30 24 chr13 9371608 9371691 -92501478 + MER69 DNA AcHobo 2420 2504 -22 24 0 0 0 chr13 9372478 9372502 -92500667 + AT_rich Low_complexity Low_complexity 1 24 0 1941 109 13 35 chr13 9372502 9372690 -92500479 - L1PB1 LINE L1 0 6151 5971 2391 101 3 0 chr13 9372690 9372998 -92500171 - AluSx SINE Alu -3 309 1 1941 109 13 35 chr13 9372998 9373121 -92500048 - L1PB1 LINE L1 -180 5971 5847 1054 96 0 0 chr13 9373122 9373258 -92499911 - AluJb SINE Alu -176 136 1 226 279 15 15 chr13 9573826 9573894 -92299275 - LTR16A LTR ERVL -5 445 378 3830 128 93 47 chr13 9573993 9574738 -92298431 + LTR1 LTR ERV1 7 785 0 2136 117 0 29 chr13 9575393 9575709 -92297460 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 9576007 9576028 -92297141 + AT_rich Low_complexity Low_complexity 1 21 0 1419 170 30 48 chr13 9576030 9576301 -92296868 - AluJo SINE Alu -22 290 25 252 157 39 0 chr13 9576869 9576920 -92296249 + MIR SINE MIR 200 252 -10 22 0 0 0 chr13 9577284 9577306 -92295863 + AT_rich Low_complexity Low_complexity 1 22 0 381 206 28 0 chr13 9577324 9577431 -92295738 + (TA)n Simple_repeat Simple_repeat 1 110 0 647 87 11 22 chr13 9577432 9577524 -92295645 - FLAM_A SINE Alu -19 123 33 2006 151 10 74 chr13 9577594 9577633 -92295536 - MLT1B LTR MaLR 0 390 350 2386 104 3 0 chr13 9577633 9577942 -92295227 + AluSp SINE Alu 1 310 -3 2006 151 10 74 chr13 9577942 9578319 -92294850 - MLT1B LTR MaLR -40 350 1 230 129 0 0 chr13 9579025 9579056 -92294113 + MER46A DNA MER2_type 2 32 -204 761 108 0 0 chr13 9579058 9579160 -92294009 - AluSp/q SINE Alu -18 295 194 689 115 10 10 chr13 9579160 9579264 -92293905 + MER46A DNA MER2_type 129 232 -4 1290 157 94 118 chr13 9579353 9579812 -92293357 + LTR7 LTR ERV1 1 448 -2 2924 3 0 3 chr13 9579910 9580222 -92292947 + AluYa5 SINE Alu 1 311 0 437 285 20 20 chr13 9580317 9580468 -92292701 + MLT1H LTR MaLR 155 305 -244 428 228 165 29 chr13 9580696 9580902 -92292267 + MLT1H LTR MaLR 315 548 -7 256 284 65 41 chr13 9581216 9581385 -92291784 + HAL1 LINE L1 473 645 -1862 1981 163 96 0 chr13 9581650 9582036 -92291133 - MSTB LTR MaLR 0 426 4 227 205 0 48 chr13 9582155 9582238 -92290931 + HAL1 LINE L1 999 1077 -1430 415 348 39 19 chr13 9582728 9582984 -92290185 - MIR SINE MIR 0 262 2 2242 118 0 13 chr13 9583080 9583393 -92289776 + AluSg SINE Alu 2 310 0 2548 190 58 17 chr13 9584172 9584689 -92288480 + MLT1F LTR MaLR 5 542 0 339 286 57 0 chr13 9585144 9585249 -92287920 - L1MC4 LINE L1 0 8042 7932 3966 155 33 19 chr13 9585250 9585979 -92287190 + L1PA16 LINE L1 5419 6157 -9 21 0 0 0 chr13 9585984 9586005 -92287164 + AT_rich Low_complexity Low_complexity 1 21 0 533 218 210 44 chr13 9586185 9586456 -92286713 - L1MC4 LINE L1 -249 7793 7478 440 192 3 33 chr13 9587131 9587241 -92285928 + L1PA16 LINE L1 5904 6009 -165 189 195 0 24 chr13 9587296 9587337 -92285832 - L3 LINE CR1 -1361 216 177 28 48 0 0 chr13 9588071 9588113 -92285056 + AT_rich Low_complexity Low_complexity 1 42 0 1680 133 39 0 chr13 9588433 9588688 -92284481 + AluJb SINE Alu 40 304 -8 2366 105 7 3 chr13 9588864 9589168 -92284001 + AluSx SINE Alu 1 305 -7 1736 195 55 3 chr13 9589214 9589557 -92283612 - MLT1A1 LTR MaLR 0 365 5 325 143 0 0 chr13 9589642 9589691 -92283478 - MER3 DNA MER1_type -6 203 155 1027 111 0 21 chr13 9589693 9589837 -92283332 + AluJb SINE Alu 1 141 -171 763 205 38 17 chr13 9589859 9590070 -92283099 - MER3 DNA MER1_type -43 166 2 2031 149 0 3 chr13 9590313 9590609 -92282560 - AluSx SINE Alu -17 295 1 370 340 28 7 chr13 9590750 9590891 -92282278 + MIR SINE MIR 8 151 -111 2431 84 3 0 chr13 9590891 9591188 -92281981 + AluSp SINE Alu 1 298 -15 2255 107 0 0 chr13 9591271 9591561 -92281608 - AluSx SINE Alu -22 290 1 365 360 49 0 chr13 9591710 9591874 -92281295 + L2 LINE L2 2884 3055 -217 186 250 0 0 chr13 9592072 9592112 -92281057 + MIR SINE MIR 217 256 -6 949 195 35 0 chr13 9592710 9592879 -92280290 + FAM SINE Alu 1 175 0 25 51 0 0 chr13 9593159 9593198 -92279971 + AT_rich Low_complexity Low_complexity 1 39 0 479 214 0 10 chr13 9593304 9593407 -92279762 - L2 LINE L2 -924 2390 2289 2039 104 14 0 chr13 9593440 9593720 -92279449 + AluSx SINE Alu 29 312 0 379 192 30 40 chr13 9593902 9593921 -92279248 - MER104 DNA Tc2 -1776 122 104 1956 156 7 7 chr13 9593921 9594228 -92278941 + AluSx SINE Alu 1 307 -5 379 192 30 40 chr13 9594228 9594307 -92278862 - MER104 DNA Tc2 -1794 104 25 2235 111 19 7 chr13 9594341 9594648 -92278521 + AluSx SINE Alu 1 311 -1 1996 132 24 7 chr13 9595307 9595603 -92277566 + AluSx SINE Alu 1 301 -11 474 207 180 0 chr13 9595661 9595811 -92277358 + MER104 DNA MER2_type 1 177 -3 866 165 0 0 chr13 9596527 9596660 -92276509 - FLAM_A SINE Alu 0 133 1 964 164 12 12 chr13 9596799 9596970 -92276199 - FAM SINE Alu 0 175 5 1453 243 121 27 chr13 9597025 9597632 -92275537 + MLT1E2 LTR MaLR 1 624 -2 1867 165 3 0 chr13 9598808 9599093 -92274076 + AluJo SINE Alu 1 286 -26 1022 176 16 5 chr13 9599291 9599478 -92273691 - MER5A DNA MER1_type 0 189 1 2158 89 57 0 chr13 9599579 9599861 -92273308 - AluSx SINE Alu -14 298 1 1723 176 13 20 chr13 9600221 9600522 -92272647 + AluJo SINE Alu 1 299 -13 665 292 26 13 chr13 9600628 9600854 -92272315 + MIR SINE MIR 21 249 -13 1376 138 61 122 chr13 9600884 9601196 -92271973 - AluJb SINE Alu -19 293 1 1467 208 0 14 chr13 9601283 9601577 -92271592 + AluSx SINE Alu 1 290 -22 521 165 0 0 chr13 9601720 9601799 -92271370 - AluJ/FLAM SINE Alu -232 80 2 2284 122 0 0 chr13 9601887 9602190 -92270979 + AluSx SINE Alu 1 303 -9 2491 53 0 23 chr13 9602190 9602491 -92270678 + AluY SINE Alu 1 294 -17 2001 193 78 76 chr13 9602558 9602816 -92270353 - HsTC2 DNA Tc2 -5 1893 1637 2233 112 0 0 chr13 9602816 9603112 -92270057 + AluSx SINE Alu 1 296 -16 2218 110 0 0 chr13 9603114 9603431 -92269738 + AluSx SINE Alu 1 317 0 2001 193 78 76 chr13 9603431 9603795 -92269374 - HsTC2 DNA Tc2 -261 1637 1265 227 236 97 14 chr13 9603800 9603872 -92269297 - HsTC2 DNA Tc2 -1778 120 43 3819 181 23 6 chr13 9603990 9604723 -92268446 - L1MB8 LINE L1 -6 6172 5427 1798 171 31 14 chr13 9604886 9605178 -92267991 - AluJo SINE Alu -13 299 3 1667 159 65 0 chr13 9605513 9605790 -92267379 - AluJb SINE Alu -17 295 1 1045 179 10 25 chr13 9606518 9606714 -92266455 - AluJ SINE Alu -13 299 107 809 143 80 116 chr13 9606714 9606738 -92266431 - THE1C LTR MaLR -1 374 351 3004 51 5 8 chr13 9606738 9607127 -92266042 + L1PA7 LINE L1 5767 6154 0 809 143 80 116 chr13 9607127 9607326 -92265843 - THE1C LTR MaLR -24 351 159 1120 122 0 0 chr13 9607327 9607504 -92265665 + AluSq SINE Alu 151 327 0 332 330 67 6 chr13 9607779 9607958 -92265211 + MIR SINE MIR 2 191 -71 859 154 70 6 chr13 9608502 9608658 -92264511 - THE1C LTR MaLR -207 168 3 705 173 0 0 chr13 9608662 9608772 -92264397 - AluJ SINE Alu -201 111 2 2073 147 0 0 chr13 9608834 9609133 -92264036 - AluSx SINE Alu -13 299 1 205 219 110 0 chr13 9609167 9609249 -92263920 - MIR SINE MIR -69 193 103 209 240 146 10 chr13 9609361 9609457 -92263712 + MIR SINE MIR 138 246 -16 189 385 120 8 chr13 9610522 9610639 -92262530 - MIR SINE MIR -113 149 20 2669 42 0 3 chr13 9611523 9611834 -92261335 + AluY SINE Alu 1 310 -1 277 175 0 35 chr13 9612895 9612952 -92260217 + Tigger4(Zombi) DNA MER2_type 4 58 -2673 1337 142 0 0 chr13 9612977 9613181 -92259988 + Tigger4(Zombi) DNA MER2_type 2528 2731 0 480 262 213 19 chr13 9613195 9613458 -92259711 + L1MC/D LINE L1 5506 5819 -1989 1942 162 7 0 chr13 9613541 9613838 -92259331 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr13 9614009 9614030 -92259139 + AT_rich Low_complexity Low_complexity 1 21 0 432 0 0 0 chr13 9614286 9614334 -92258835 + (TG)n Simple_repeat Simple_repeat 2 49 0 575 258 150 45 chr13 9614345 9614399 -92258770 - L1ME4a LINE L1 0 6121 6074 2141 92 18 0 chr13 9614399 9614714 -92258455 + AluSx SINE Alu 6 325 0 575 258 150 45 chr13 9614714 9614833 -92258336 - L1ME4a LINE L1 -47 6074 5969 2393 78 7 0 chr13 9614833 9615129 -92258040 + AluSg SINE Alu 1 298 -12 575 258 150 45 chr13 9615129 9615280 -92257889 - L1ME4a LINE L1 -152 5969 5835 2047 130 41 0 chr13 9615280 9615573 -92257596 - AluSx SINE Alu -7 305 1 575 258 150 45 chr13 9615573 9615691 -92257478 - L1ME4a LINE L1 -286 5835 5629 339 235 117 34 chr13 9615709 9615888 -92257281 - MIR SINE MIR -59 203 10 371 200 60 67 chr13 9616125 9616140 -92257029 + MER112 DNA MER1_type 1 15 -245 2148 139 0 0 chr13 9616140 9616441 -92256728 - AluSx SINE Alu -11 301 1 371 200 60 67 chr13 9616441 9616575 -92256594 + MER112 DNA MER1_type 15 149 -111 2350 79 24 0 chr13 9616643 9616934 -92256235 - AluSp SINE Alu -15 298 1 1665 141 8 0 chr13 9617412 9617653 -92255516 - AluSx SINE Alu -69 243 1 2132 121 3 10 chr13 9618384 9618691 -92254478 + AluSq SINE Alu 2 306 -7 684 222 166 74 chr13 9619035 9619171 -92253998 - HAL1 LINE L1 -226 2281 2159 2044 94 0 0 chr13 9619171 9619425 -92253744 - AluSx SINE Alu -58 254 1 684 222 166 74 chr13 9619425 9619788 -92253381 - HAL1 LINE L1 -348 2159 1736 841 216 144 41 chr13 9619802 9620094 -92253075 - HAL1 LINE L1 -803 1704 1383 879 230 221 63 chr13 9620111 9620428 -92252741 - L1ME3A LINE L1 -8 6162 5754 405 0 0 0 chr13 9620428 9620473 -92252696 + (TA)n Simple_repeat Simple_repeat 2 46 0 879 230 221 63 chr13 9620473 9620598 -92252571 - L1ME3A LINE L1 -416 5754 5650 22 0 0 0 chr13 9620694 9620716 -92252453 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 9621033 9621062 -92252107 + AT_rich Low_complexity Low_complexity 1 29 0 1117 34 34 31 chr13 9621227 9621583 -92251586 + (TTTC)n Simple_repeat Simple_repeat 1 357 0 2285 88 0 0 chr13 9621667 9621972 -92251197 - AluSx SINE Alu 0 305 1 2540 60 3 3 chr13 9623358 9623659 -92249510 - AluSp SINE Alu -12 301 1 819 148 0 16 chr13 9623993 9624115 -92249054 + FLAM_A SINE Alu 6 125 -17 2446 93 0 3 chr13 9625893 9626203 -92246966 - AluSx SINE Alu -3 309 1 480 243 66 29 chr13 9626317 9626453 -92246716 - MLT1E3 LTR MaLR -430 194 54 3157 195 33 3 chr13 9627027 9627602 -92245567 + MER21B LTR ERV1 24 615 -248 546 223 142 9 chr13 9627755 9627966 -92245203 - HAL1 LINE L1 -1468 1039 801 518 158 12 0 chr13 9627972 9628054 -92245115 + FLAM_A SINE Alu 42 124 -18 221 128 43 0 chr13 9628141 9628188 -92244981 + (TTA)n Simple_repeat Simple_repeat 2 50 0 397 321 153 51 chr13 9628266 9628362 -92244807 - HAL1 LINE L1 -1932 575 490 925 173 74 40 chr13 9628362 9628463 -92244706 - MER3 DNA MER1_type 0 209 113 1931 150 0 29 chr13 9628463 9628777 -92244392 - AluJb SINE Alu -7 305 1 925 173 74 40 chr13 9628777 9628877 -92244292 - MER3 DNA MER1_type -96 113 1 397 321 153 51 chr13 9628877 9628893 -92244276 - HAL1 LINE L1 -2017 490 477 2172 105 3 3 chr13 9628893 9629189 -92243980 - AluSc SINE Alu -13 296 1 397 321 153 51 chr13 9629189 9629261 -92243908 - HAL1 LINE L1 -2030 477 414 1699 197 0 3 chr13 9629261 9629560 -92243609 - AluJo SINE Alu -14 298 1 397 321 153 51 chr13 9629560 9629803 -92243366 - HAL1 LINE L1 -2093 414 102 189 316 0 0 chr13 9629999 9630056 -92243113 - L2 LINE L2 -1 3312 3256 240 246 9 105 chr13 9630234 9630348 -92242821 + MLT1H LTR MaLR 434 536 -13 1825 119 0 19 chr13 9630444 9630704 -92242465 + AluSx SINE Alu 35 289 -23 3075 86 3 0 chr13 9630864 9631238 -92241931 + THE1C LTR MaLR 1 375 0 1501 189 54 0 chr13 9631792 9632072 -92241097 + AluJb SINE Alu 2 296 -16 1537 159 32 42 chr13 9632186 9632469 -92240700 - AluJb SINE Alu -31 281 2 2218 100 0 32 chr13 9632483 9632792 -92240377 - AluSx SINE Alu -13 299 1 199 338 13 13 chr13 9633027 9633104 -92240065 - L2 LINE L2 -1 3271 3195 194 300 56 33 chr13 9634256 9634346 -92238823 + L2 LINE L2 2630 2721 -593 1825 125 56 14 chr13 9634482 9634769 -92238400 - AluJo SINE Alu -13 299 1 955 218 70 35 chr13 9634893 9635209 -92237960 - L1MC4 LINE L1 0 8042 7716 207 114 0 0 chr13 9635468 9635503 -92237666 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 491 291 55 58 chr13 9635768 9636112 -92237057 + LTR16C LTR ERVL 149 491 0 462 235 25 86 chr13 9636135 9636297 -92236872 + MIR SINE MIR 29 180 -82 2612 33 0 3 chr13 9637809 9638108 -92235061 - AluY SINE Alu -5 306 9 2191 124 3 0 chr13 9638898 9639196 -92233973 + AluSq SINE Alu 1 299 -14 4041 118 31 2 chr13 9639208 9639818 -92233351 + L1MA5A LINE L1 5667 6294 -3 264 278 83 38 chr13 9640188 9640321 -92232848 + L2 LINE L2 3159 3297 -16 188 360 140 32 chr13 9640339 9640589 -92232580 - L3 LINE CR1 -7 1570 1294 873 164 24 18 chr13 9641532 9641697 -92231472 + MER5A DNA MER1_type 22 187 -2 220 253 232 0 chr13 9641706 9641805 -92231364 + L2 LINE L2 3151 3272 0 187 133 0 0 chr13 9642909 9642939 -92230230 + L2 LINE L2 3284 3313 0 596 326 62 27 chr13 9642944 9643315 -92229854 - L2 LINE L2 -1217 2097 1714 215 291 27 27 chr13 9643909 9644019 -92229150 - L2 LINE L2 -1232 2082 1973 238 291 184 50 chr13 9644061 9644556 -92228613 - L2 LINE L2 -1097 2217 1657 1964 92 92 0 chr13 9644815 9645088 -92228081 + AluSx SINE Alu 1 298 -14 24 0 0 0 chr13 9645146 9645170 -92227999 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 9645192 9645213 -92227956 + AT_rich Low_complexity Low_complexity 1 21 0 1805 160 0 17 chr13 9646102 9646396 -92226773 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 9646757 9646779 -92226390 + AT_rich Low_complexity Low_complexity 1 22 0 1494 143 0 115 chr13 9646926 9647272 -92225897 + AluSx SINE Alu 1 309 0 365 279 39 10 chr13 9647825 9647929 -92225240 - MIR SINE MIR -109 153 47 487 204 265 20 chr13 9648342 9648489 -92224680 - MER5A DNA MER1_type -3 186 4 1661 170 47 7 chr13 9649081 9649381 -92223788 - MER58B DNA MER1_type 0 341 30 2234 95 3 26 chr13 9650119 9650425 -92222744 - AluSg SINE Alu -11 299 1 1308 214 126 53 chr13 9650912 9651000 -92222169 + MLT1C LTR MaLR 1 81 -386 1671 185 3 13 chr13 9651000 9651302 -92221867 + AluJo SINE Alu 1 299 -13 1308 214 126 53 chr13 9651302 9651648 -92221521 + MLT1C LTR MaLR 81 467 0 1893 123 41 0 chr13 9651670 9651939 -92221230 + AluSx SINE Alu 1 280 -32 741 254 51 42 chr13 9652250 9652467 -92220702 - MIR SINE MIR -30 232 14 786 155 0 23 chr13 9652957 9653086 -92220083 + FLAM_C SINE Alu 13 138 -5 2397 83 0 3 chr13 9654068 9654369 -92218800 - AluSg SINE Alu -10 300 1 25 31 0 0 chr13 9654593 9654625 -92218544 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 9654651 9654674 -92218495 + AT_rich Low_complexity Low_complexity 1 23 0 2025 143 0 10 chr13 9656421 9656729 -92216440 - AluJb SINE Alu -7 305 1 278 269 39 0 chr13 9657148 9657226 -92215943 + L2 LINE L2 3188 3268 -4 190 333 65 43 chr13 9658200 9658293 -92214876 + L2 LINE L2 3215 3309 -4 828 131 95 0 chr13 9658550 9658687 -92214482 + FRAM SINE Alu 6 155 -21 225 326 103 63 chr13 9659005 9659180 -92213989 + MIR3 SINE MIR 21 202 -6 354 210 20 20 chr13 9659570 9659670 -92213499 + L2 LINE L2 2446 2545 -769 721 210 57 19 chr13 9659676 9659833 -92213336 + MLT1A2 LTR MaLR 1 163 -211 1786 170 10 7 chr13 9659836 9660136 -92213033 + AluJo SINE Alu 1 301 -11 654 195 67 7 chr13 9660136 9660285 -92212884 + MLT1A2 LTR MaLR 230 387 -3 674 272 117 5 chr13 9660387 9660593 -92212576 + MIR SINE MIR 34 262 0 363 307 40 125 chr13 9660884 9661236 -92211933 + L2 LINE L2 2950 3271 -1 541 345 96 47 chr13 9661243 9661918 -92211251 + L2 LINE L2 2538 3259 -13 332 286 0 48 chr13 9662102 9662207 -92210962 - MER112 DNA MER1_type -160 100 1 343 280 113 54 chr13 9662350 9662518 -92210651 + MIR SINE MIR 77 254 -8 235 232 18 0 chr13 9663334 9663390 -92209779 - L2 LINE L2 0 3313 3257 262 288 0 0 chr13 9663463 9663522 -92209647 + L2 LINE L2 3209 3267 -5 708 174 137 31 chr13 9663724 9663885 -92209284 - AluJo SINE Alu -20 292 115 2290 72 3 7 chr13 9664821 9665113 -92208056 + AluY SINE Alu 1 291 -20 195 233 0 0 chr13 9665255 9665298 -92207871 + L2 LINE L2 2464 2506 -808 525 329 6 6 chr13 9665298 9665468 -92207701 + L2 LINE L2 2483 2652 -662 870 165 0 0 chr13 9665496 9665629 -92207540 - AluJo SINE Alu -179 133 1 201 294 29 0 chr13 9665631 9665699 -92207470 + L2 LINE L2 2689 2758 -556 1958 161 16 0 chr13 9665713 9666017 -92207152 + AluJb SINE Alu 1 309 -3 2105 86 53 30 chr13 9666017 9666317 -92206852 + AluSc SINE Alu 1 308 -1 726 230 22 0 chr13 9666347 9666486 -92206683 + FRAM SINE Alu 27 168 -8 260 183 0 17 chr13 9666501 9666561 -92206608 + GA-rich Low_complexity Low_complexity 2 60 0 29 0 0 0 chr13 9666563 9666592 -92206577 + AT_rich Low_complexity Low_complexity 1 29 0 691 276 171 27 chr13 9666595 9667064 -92206105 + L2 LINE L2 2772 3307 -6 23 0 0 0 chr13 9667157 9667180 -92205989 + AT_rich Low_complexity Low_complexity 1 23 0 1858 174 0 7 chr13 9667328 9667626 -92205543 + AluJb SINE Alu 1 296 -16 941 156 22 34 chr13 9667626 9667805 -92205364 + AluJb SINE Alu 134 310 -2 1701 124 84 4 chr13 9667872 9668146 -92205023 + AluSx SINE Alu 5 300 -12 527 247 109 64 chr13 9668234 9668501 -92204668 + L2 LINE L2 1645 1923 -1391 4955 201 25 8 chr13 9668666 9669713 -92203456 - L1 LINE L1 -1250 4896 3832 385 111 48 0 chr13 9672003 9672066 -92201103 - MIR3 SINE MIR -53 155 90 1751 122 45 17 chr13 9674045 9674380 -92198789 - MER4A LTR ERV1 0 664 262 467 101 0 14 chr13 9674395 9674464 -92198705 - MER4A LTR ERV1 -595 69 2 2254 94 7 0 chr13 9675247 9675535 -92197634 - AluSp SINE Alu -23 290 1 26 0 0 0 chr13 9675837 9675863 -92197306 + AT_rich Low_complexity Low_complexity 1 26 0 2189 117 0 0 chr13 9676165 9676465 -92196704 + AluSx SINE Alu 1 300 -12 197 266 0 16 chr13 9676480 9676544 -92196625 + MIR SINE MIR 186 248 -14 33 43 0 0 chr13 9676544 9676591 -92196578 + AT_rich Low_complexity Low_complexity 1 47 0 213 39 0 0 chr13 9676748 9676774 -92196395 + (T)n Simple_repeat Simple_repeat 1 26 0 888 150 13 39 chr13 9676892 9677045 -92196124 + FAM SINE Alu 18 166 -19 210 37 0 0 chr13 9677046 9677073 -92196096 + (CATA)n Simple_repeat Simple_repeat 4 30 0 2071 102 6 87 chr13 9678065 9678263 -92194906 - AluSx SINE Alu -6 306 94 273 57 0 0 chr13 9678263 9678298 -92194871 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2159 99 0 3 chr13 9678298 9678581 -92194588 - AluY SINE Alu -29 282 1 2071 102 6 87 chr13 9678581 9678714 -92194455 - AluSx SINE Alu -216 96 1 285 250 167 8 chr13 9678738 9678858 -92194311 - L1MC5 LINE L1 -58 7903 7765 915 126 0 15 chr13 9678995 9679130 -92194039 - AluSq/x SINE Alu -180 133 1 247 306 207 0 chr13 9680465 9680576 -92192593 + L2 LINE L2 3139 3272 0 1570 185 0 11 chr13 9680838 9681114 -92192055 + AluJo SINE Alu 24 296 -16 1952 161 3 0 chr13 9681334 9681644 -92191525 + AluSx SINE Alu 2 312 0 1658 167 10 20 chr13 9682041 9682340 -92190829 - AluJb SINE Alu -15 297 2 2043 150 3 0 chr13 9682347 9682641 -92190528 - AluSx SINE Alu -17 295 1 215 321 64 0 chr13 9682880 9682989 -92190180 - MIR SINE MIR -60 202 87 224 313 53 13 chr13 9682995 9683145 -92190024 + L2 LINE L2 2181 2336 -978 193 228 105 0 chr13 9683281 9683338 -92189831 + L2 LINE L2 3249 3311 -2 231 339 0 0 chr13 9683869 9683931 -92189238 + L2 LINE L2 3205 3266 -6 2299 138 109 0 chr13 9684328 9684712 -92188457 + MSTB LTR MaLR 1 426 0 891 152 0 0 chr13 9685135 9685267 -92187902 + FLAM_C SINE Alu 1 132 -1 2250 116 0 10 chr13 9685984 9686287 -92186882 + AluSx SINE Alu 1 300 -12 355 151 47 70 chr13 9687103 9687189 -92185980 - AluJ/FLAM SINE Alu -218 84 1 2512 53 7 3 chr13 9687626 9687925 -92185244 + AluY SINE Alu 1 300 -11 217 350 8 16 chr13 9688459 9688582 -92184587 - MIR3 SINE MIR -6 202 81 201 119 48 0 chr13 9689123 9689165 -92184004 + (TA)n Simple_repeat Simple_repeat 1 44 0 268 119 0 0 chr13 9689167 9689209 -92183960 - L1MB5 LINE L1 0 6174 6133 2357 62 42 0 chr13 9689209 9689498 -92183671 - AluY SINE Alu -10 301 1 3005 157 26 8 chr13 9689500 9690030 -92183139 - L1MB4 LINE L1 -355 5825 5286 458 247 75 107 chr13 9690024 9690144 -92183025 - L1ME4a LINE L1 -154 5967 5845 * 1921 166 0 0 chr13 9690144 9690434 -92182735 + AluSx SINE Alu 1 290 -22 458 247 75 107 chr13 9690434 9690445 -92182724 - L1ME4a LINE L1 -276 5845 5835 2260 95 3 0 chr13 9690445 9690749 -92182420 + AluSq SINE Alu 1 305 0 458 247 75 107 chr13 9690749 9691044 -92182125 - L1ME4a LINE L1 -286 5835 5553 1797 103 8 4 chr13 9691711 9691963 -92181206 - AluSx SINE Alu -3 309 57 2195 92 0 7 chr13 9692197 9692511 -92180658 + AluSc SINE Alu 1 312 0 2123 130 0 3 chr13 9692625 9692932 -92180237 + AluSx SINE Alu 1 306 -6 1666 141 15 27 chr13 9693118 9693380 -92179789 - AluJo SINE Alu -17 295 37 2330 93 0 22 chr13 9693557 9693870 -92179299 - AluSq SINE Alu -7 306 1 1904 156 7 0 chr13 9694070 9694385 -92178784 - AluJb SINE Alu 0 317 1 811 224 0 24 chr13 9694420 9694590 -92178579 + FRAM SINE Alu 1 166 0 207 209 0 0 chr13 9695187 9695230 -92177939 + T-rich Low_complexity Low_complexity 1 43 0 2259 99 0 3 chr13 9695357 9695641 -92177528 + AluSq SINE Alu 1 283 -30 193 28 0 56 chr13 9695660 9695696 -92177473 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1102 178 0 0 chr13 9696166 9696340 -92176829 + FAM SINE Alu 1 174 -1 2632 61 3 0 chr13 9696662 9696974 -92176195 - AluSq SINE Alu 0 313 1 333 256 120 73 chr13 9697259 9697493 -92175676 - L2 LINE L2 -37 3276 3032 2278 90 7 7 chr13 9698364 9698664 -92174505 + AluSx SINE Alu 1 300 -12 1579 63 5 0 chr13 9698665 9698854 -92174315 + AluSq SINE Alu 1 190 -123 1818 157 13 13 chr13 9699859 9700159 -92173010 + AluJo SINE Alu 1 300 -12 26 0 0 0 chr13 9700205 9700231 -92172938 + AT_rich Low_complexity Low_complexity 1 26 0 636 259 21 51 chr13 9700718 9700954 -92172215 + MIR SINE MIR 31 259 -3 505 113 0 0 chr13 9700967 9701047 -92172122 - FLAM_C SINE Alu 0 143 64 362 211 58 0 chr13 9701211 9701315 -92171854 + L1ME LINE L1 5685 5794 -327 801 159 0 8 chr13 9701492 9701618 -92171551 - FLAM_C SINE Alu -7 126 2 559 208 30 0 chr13 9701767 9701868 -92171301 + FLAM_A SINE Alu 1 104 -38 2515 67 0 0 chr13 9702666 9702964 -92170205 - AluY SINE Alu -13 298 1 365 169 0 11 chr13 9705708 9705797 -92167372 + CT-rich Low_complexity Low_complexity 2 89 0 23 33 0 0 chr13 9708022 9708052 -92165117 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 9708911 9708933 -92164236 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 9708985 9709013 -92164156 + GC_rich Low_complexity Low_complexity 1 28 0 243 114 0 0 chr13 9709097 9709141 -92164028 + (TG)n Simple_repeat Simple_repeat 1 44 0 324 285 0 39 chr13 9709432 9709562 -92163607 + L2 LINE L2 2218 2342 -972 387 172 17 0 chr13 9709767 9709825 -92163344 + MER2 DNA MER2_type 2 60 -285 1537 138 65 11 chr13 9709912 9710172 -92162997 + MER2 DNA MER2_type 72 345 0 185 170 21 0 chr13 9710226 9710273 -92162896 - L2 LINE L2 -164 3149 3102 * 204 300 20 0 chr13 9710271 9710321 -92162848 + MER91A DNA MER1_type 119 169 -27 501 251 46 11 chr13 9710386 9710561 -92162608 - L2 LINE L2 -524 2790 2610 1112 163 62 14 chr13 9710561 9710770 -92162399 + MER20 DNA MER1_type 1 219 0 1691 258 84 66 chr13 9710789 9710846 -92162323 - L2 LINE L2 -721 2593 2539 2407 76 0 3 chr13 9710846 9711149 -92162020 - AluY SINE Alu -9 302 1 1691 258 84 66 chr13 9711149 9711920 -92161249 - L2 LINE L2 -775 2539 1750 308 237 96 29 chr13 9712075 9712301 -92160868 - L1MC4 LINE L1 -211 7750 7504 1683 131 105 43 chr13 9713455 9713806 -92159363 + THE1C LTR MaLR 3 375 0 27 29 0 0 chr13 9713994 9714028 -92159141 + AT_rich Low_complexity Low_complexity 1 34 0 1056 184 112 18 chr13 9714123 9714346 -92158823 + MLT1F LTR MaLR 1 244 -298 683 183 37 92 chr13 9714350 9714514 -92158655 + MLT1F LTR MaLR 413 567 0 2420 62 10 7 chr13 9715171 9715477 -92157692 + AluY SINE Alu 1 307 -4 198 281 110 12 chr13 9715527 9715609 -92157560 + MER5B DNA MER1_type 50 139 -39 402 122 0 81 chr13 9715616 9715690 -92157479 + Tigger2 DNA MER2_type 2 69 -2649 * 2230 155 67 23 chr13 9715674 9715791 -92157378 + Tigger2 DNA MER2_type 2267 2377 -341 2614 94 24 13 chr13 9715791 9716174 -92156995 - L1PB2 LINE L1 -4 6147 5761 2230 155 67 23 chr13 9716174 9716489 -92156680 + Tigger2 DNA MER2_type 2377 2718 0 368 223 293 19 chr13 9716641 9716798 -92156371 - MIR SINE MIR -6 256 57 1602 108 117 4 chr13 9717391 9717631 -92155538 - AluSg SINE Alu -21 289 23 459 161 0 12 chr13 9717969 9718050 -92155119 + MER21B LTR ERV1 420 499 -364 291 302 0 47 chr13 9718235 9718321 -92154848 - L2 LINE L2 -46 3226 3145 425 179 0 21 chr13 9718349 9718444 -92154725 + (CATATA)n Simple_repeat Simple_repeat 3 95 0 213 333 50 30 chr13 9719169 9719268 -92153901 + MIR SINE MIR 20 120 -88 778 201 12 6 chr13 9719268 9719432 -92153737 - AluSx SINE Alu -8 302 138 593 134 0 0 chr13 9719431 9719513 -92153656 - AluSx SINE Alu -229 83 2 * 464 277 104 49 chr13 9719983 9720369 -92152800 + L1MC4a LINE L1 5617 6023 -1785 460 264 58 34 chr13 9720558 9720732 -92152437 - MIR3 SINE MIR -12 196 18 186 236 146 0 chr13 9720738 9720793 -92152376 - MIR SINE MIR -103 105 43 2029 105 0 51 chr13 9720887 9721202 -92151967 - AluSg SINE Alu -11 299 1 914 220 121 23 chr13 9721499 9721804 -92151365 - MER46C DNA MER2_type 0 338 4 229 276 105 59 chr13 9725140 9725379 -92147790 - L2 LINE L2 -739 2575 2326 730 187 187 11 chr13 9726038 9726220 -92146949 + MER20 DNA MER1_type 1 214 -5 195 339 122 26 chr13 9726456 9726645 -92146524 - L3 LINE CR1 -79 1498 1292 201 281 123 44 chr13 9728927 9729041 -92144128 - MIR SINE MIR -114 148 26 343 242 129 24 chr13 9729057 9729181 -92143988 - MER5A DNA MER1_type -16 173 37 992 249 143 27 chr13 9729308 9729920 -92143249 - L2 LINE L2 -8 3305 2629 2059 232 143 61 chr13 9729924 9730681 -92142488 + MER21B LTR ERV1 5 829 -34 2336 114 29 109 chr13 9730681 9730743 -92142426 + MER65A LTR ERV1 1 66 -379 1492 181 0 35 chr13 9730743 9731057 -92142112 + AluJo SINE Alu 1 303 -9 2336 114 29 109 chr13 9731057 9731478 -92141691 + MER65A LTR ERV1 66 445 0 2059 232 143 61 chr13 9731478 9731503 -92141666 + MER21B LTR ERV1 829 851 -12 911 186 133 8 chr13 9731510 9731758 -92141411 - L2 LINE L2 -677 2637 2359 401 87 0 29 chr13 9731843 9731912 -92141257 - AluSc SINE Alu 0 309 243 214 333 20 0 chr13 9732034 9732133 -92141036 + CT-rich Low_complexity Low_complexity 2 102 0 2084 104 14 0 chr13 9732354 9732641 -92140528 - AluSx SINE Alu -21 291 1 25 0 0 0 chr13 9732745 9732770 -92140399 + AT_rich Low_complexity Low_complexity 1 25 0 1287 174 19 84 chr13 9732837 9732931 -92140238 + MER58B DNA MER1_type 51 149 -2271 1998 109 14 14 chr13 9732931 9733259 -92139910 + AluSx SINE Alu 1 312 0 1287 174 19 84 chr13 9733259 9733475 -92139694 + MER58B DNA MER1_type 149 341 0 24 0 0 0 chr13 9733768 9733792 -92139377 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 9734566 9734595 -92138574 + AT_rich Low_complexity Low_complexity 1 29 0 1687 125 35 17 chr13 9734600 9734769 -92138400 - L1MB2 LINE L1 -32 6139 5961 2062 95 15 58 chr13 9734769 9735094 -92138075 - AluSx SINE Alu -1 311 1 1687 125 35 17 chr13 9735094 9735211 -92137958 - L1MB2 LINE L1 -210 5961 5848 2012 42 0 0 chr13 9735372 9735613 -92137556 - L1PA7 LINE L1 -200 5954 5714 2354 115 0 0 chr13 9735613 9735918 -92137251 - AluSg SINE Alu -5 305 1 1727 129 80 10 chr13 9736297 9736608 -92136561 + MER44D DNA MER2_type 1 603 -6 458 113 0 38 chr13 9736609 9736689 -92136480 - Tigger7 DNA MER2_type -63 2524 2448 2056 116 0 44 chr13 9736695 9737015 -92136154 + AluSx SINE Alu 1 306 -6 3778 167 42 3 chr13 9737027 9737667 -92135502 - Tigger7 DNA MER2_type -1821 666 2 752 298 97 25 chr13 9737718 9738753 -92134416 - L1ME3A LINE L1 -307 5863 4743 419 266 44 44 chr13 9739790 9739948 -92133221 + L1ME LINE L1 5618 5775 -346 719 165 0 0 chr13 9739969 9740078 -92133091 + FLAM_A SINE Alu 11 119 -23 1094 149 63 54 chr13 9740150 9740371 -92132798 - AluJb SINE Alu -7 305 83 425 293 83 13 chr13 9741367 9741524 -92131645 + MER5B DNA MER1_type 7 174 -4 539 233 25 0 chr13 9741527 9741647 -92131522 + MLT1L LTR MaLR 149 271 -344 31 26 0 0 chr13 9741971 9742009 -92131160 + AT_rich Low_complexity Low_complexity 1 38 0 42 65 0 0 chr13 9742064 9742141 -92131028 + AT_rich Low_complexity Low_complexity 1 77 0 2350 88 0 0 chr13 9742141 9742426 -92130743 + AluSc SINE Alu 1 285 -24 294 206 0 0 chr13 9742428 9742491 -92130678 + (TA)n Simple_repeat Simple_repeat 1 63 0 25 0 0 0 chr13 9742585 9742610 -92130559 + AT_rich Low_complexity Low_complexity 1 25 0 355 183 343 14 chr13 9742777 9742920 -92130249 - L1ME1 LINE L1 0 6166 5969 2309 90 3 3 chr13 9743616 9743916 -92129253 + AluSq SINE Alu 1 300 -13 291 273 106 30 chr13 9744319 9744451 -92128718 + MER5B DNA MER1_type 7 148 -30 1404 157 0 26 chr13 9745115 9745345 -92127824 - AluJo SINE Alu -12 300 77 385 158 12 18 chr13 9745402 9745486 -92127683 - AluJ/FLAM SINE Alu -235 67 6 692 116 290 0 chr13 9746489 9746627 -92126542 + Tigger4(Zombi) DNA MER2_type 2554 2731 0 2139 118 0 3 chr13 9746822 9747118 -92126051 - AluSx SINE Alu -17 295 1 2260 94 7 7 chr13 9747211 9747510 -92125659 + AluSq SINE Alu 1 299 -14 441 301 48 24 chr13 9748150 9748359 -92124810 - MIR SINE MIR -46 216 3 411 216 0 39 chr13 9748968 9749070 -92124099 + MIR SINE MIR 87 184 -78 846 192 150 16 chr13 9749787 9749980 -92123189 + MER20 DNA MER1_type 1 219 0 180 117 33 33 chr13 9751611 9751671 -92121498 + (CCG)n Simple_repeat Simple_repeat 3 62 0 36 0 0 0 chr13 9751725 9751761 -92121408 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr13 9751944 9751986 -92121183 + GC_rich Low_complexity Low_complexity 1 42 0 591 206 152 12 chr13 9754188 9754353 -92118816 + MIR SINE MIR 1 188 -74 2224 91 7 0 chr13 9754483 9754795 -92118374 - AluSq SINE Alu 0 313 1 2107 130 10 0 chr13 9755125 9755432 -92117737 - AluSx SINE Alu -2 310 1 1798 133 0 71 chr13 9755701 9755876 -92117293 - AluJb SINE Alu -10 302 159 2227 102 0 0 chr13 9755876 9756170 -92116999 - AluSc SINE Alu -15 294 1 1798 133 0 71 chr13 9756170 9756317 -92116852 - AluJb SINE Alu -153 159 3 620 142 239 0 chr13 9756319 9756432 -92116737 - AluJo SINE Alu -171 141 2 334 239 14 0 chr13 9756441 9756512 -92116657 + L2 LINE L2 3201 3272 0 2393 104 0 0 chr13 9756879 9757188 -92115981 - AluSx SINE Alu -1 311 3 216 0 0 0 chr13 9757190 9757214 -92115955 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 26 23 0 23 chr13 9757214 9757232 -92115937 + AT_rich Low_complexity Low_complexity 1 18 -25 2017 125 25 0 chr13 9757232 9757511 -92115658 - AluSg SINE Alu -24 286 1 26 23 0 23 chr13 9757511 9757536 -92115633 + AT_rich Low_complexity Low_complexity 18 43 0 2360 92 0 22 chr13 9757579 9757896 -92115273 - AluSq SINE Alu -3 310 1 2436 67 10 6 chr13 9757897 9758209 -92114960 - AluSq SINE Alu 0 313 1 1564 138 5 0 chr13 9758340 9758558 -92114611 - AluSq SINE Alu -94 219 1 2484 53 10 7 chr13 9759348 9759652 -92113517 + AluSq SINE Alu 9 313 0 2360 92 0 22 chr13 9759653 9759970 -92113199 + AluSq SINE Alu 1 310 -3 26 23 0 23 chr13 9760013 9760038 -92113131 + AT_rich Low_complexity Low_complexity 1 26 -17 2017 125 25 0 chr13 9760038 9760317 -92112852 + AluSg SINE Alu 1 286 -24 26 23 0 23 chr13 9760317 9760335 -92112834 + AT_rich Low_complexity Low_complexity 26 43 0 216 0 0 0 chr13 9760335 9760359 -92112810 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1624 161 45 3 chr13 9760361 9760652 -92112517 + AluSx SINE Alu 3 305 -7 2141 130 0 0 chr13 9760681 9760989 -92112180 + AluSx SINE Alu 1 308 -4 1559 161 21 25 chr13 9761922 9762280 -92110889 + L1MB7 LINE L1 5451 5809 -375 1559 171 45 10 chr13 9762280 9762590 -92110579 + L1MB7 LINE L1 5864 6184 0 685 217 92 26 chr13 9762969 9763121 -92110048 + AluJo SINE Alu 121 282 -30 467 137 27 0 chr13 9763122 9763195 -92109974 - AluS SINE Alu -9 300 226 539 125 0 0 chr13 9763209 9763289 -92109880 - AluJ/FRAM SINE Alu -9 303 224 420 120 93 0 chr13 9763314 9763389 -92109780 - AluSc SINE Alu 0 309 228 180 0 0 0 chr13 9763389 9763409 -92109760 + (TC)n Simple_repeat Simple_repeat 2 21 0 556 69 28 0 chr13 9763409 9763481 -92109688 - Alu SINE Alu -16 294 221 189 0 0 0 chr13 9763481 9763502 -92109667 + (TC)n Simple_repeat Simple_repeat 2 22 0 477 97 111 0 chr13 9763502 9763574 -92109595 - AluJ/FRAM SINE Alu -10 302 223 1560 140 63 28 chr13 9763588 9763873 -92109296 - AluJb SINE Alu -15 297 3 998 153 0 64 chr13 9763880 9764083 -92109086 + AluJo SINE Alu 110 299 -13 817 207 17 86 chr13 9764097 9764329 -92108840 + MER102b DNA MER1_type 115 330 -11 189 0 0 0 chr13 9764481 9764502 -92108667 + (T)n Simple_repeat Simple_repeat 1 21 0 1799 108 97 4 chr13 9764532 9764801 -92108368 - AluSx SINE Alu -18 294 1 470 253 79 75 chr13 9764880 9764949 -92108220 - MIR SINE MIR -9 253 186 1982 146 0 7 chr13 9764949 9765244 -92107925 + AluSx SINE Alu 6 298 -14 470 253 79 75 chr13 9765244 9765415 -92107754 - MIR SINE MIR -76 186 12 285 155 84 42 chr13 9765582 9765653 -92107516 + MER112 DNA MER1_type 78 151 -109 852 147 12 53 chr13 9766545 9766715 -92106454 + AluJb SINE Alu 129 291 -21 299 229 153 10 chr13 9766730 9766834 -92106335 + L1ME LINE L1 5689 5805 -316 1110 155 0 12 chr13 9767027 9767195 -92105974 - FRAM SINE Alu 0 166 1 1162 81 0 0 chr13 9767219 9767367 -92105802 - AluSg/x SINE Alu 0 312 165 193 329 118 18 chr13 9767516 9767744 -92105425 + L2 LINE L2 2048 2298 -1016 756 250 52 48 chr13 9767950 9768198 -92104971 + MIR SINE MIR 14 262 0 183 129 0 0 chr13 9768644 9768675 -92104494 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 607 147 190 17 chr13 9768768 9768884 -92104285 - FLAM_A SINE Alu -6 136 1 203 295 0 16 chr13 9769085 9769146 -92104023 + CT-rich Low_complexity Low_complexity 3 62 0 1792 106 37 0 chr13 9770200 9770445 -92102724 - AluSx SINE Alu -11 301 48 206 250 0 0 chr13 9770605 9770645 -92102524 + polypyrimidine Low_complexity Low_complexity 5 44 0 490 217 191 82 chr13 9770793 9771025 -92102144 - MIR SINE MIR -6 256 2 23 0 0 0 chr13 9771103 9771126 -92102043 + AT_rich Low_complexity Low_complexity 1 23 0 1711 157 6 38 chr13 9771142 9771455 -92101714 - AluJo SINE Alu -9 303 1 286 324 7 20 chr13 9771677 9771825 -92101344 + L2 LINE L2 2431 2576 -738 1949 157 3 0 chr13 9771976 9772276 -92100893 - AluJb SINE Alu -11 301 1 942 134 0 0 chr13 9772950 9773077 -92100092 + FLAM_C SINE Alu 1 127 -6 548 136 17 17 chr13 9773086 9773204 -92099965 + GA-rich Low_complexity Low_complexity 5 122 0 2258 129 3 0 chr13 9773383 9773692 -92099477 - AluSx SINE Alu -1 311 2 363 338 72 7 chr13 9774240 9774379 -92098790 - MIR3 SINE MIR -45 163 16 22 35 0 0 chr13 9776614 9776643 -92096526 + AT_rich Low_complexity Low_complexity 1 29 0 1710 155 53 0 chr13 9776843 9777008 -92096161 - AluJb SINE Alu -9 303 115 459 0 0 0 chr13 9777008 9777059 -92096110 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1710 155 53 0 chr13 9777059 9777177 -92095992 - AluJb SINE Alu -197 115 5 239 106 43 0 chr13 9777236 9777283 -92095886 + (CATA)n Simple_repeat Simple_repeat 4 52 0 796 166 0 50 chr13 9777577 9777716 -92095453 + FLAM_A SINE Alu 1 132 -1 2169 107 31 0 chr13 9778092 9778382 -92094787 - AluSx SINE Alu -7 305 7 198 0 0 0 chr13 9778389 9778411 -92094758 + (A)n Simple_repeat Simple_repeat 1 22 0 2033 146 10 0 chr13 9778700 9779001 -92094168 + AluSx SINE Alu 1 304 -8 843 146 0 16 chr13 9779034 9779157 -92094012 + FRAM SINE Alu 36 156 -20 2413 209 103 70 chr13 9779313 9779395 -92093774 + L1ME1 LINE L1 4811 4889 -1277 2385 91 0 3 chr13 9779395 9779692 -92093477 - AluSq SINE Alu -17 296 1 2413 209 103 70 chr13 9779692 9779764 -92093405 + L1ME1 LINE L1 4889 4957 -1209 1610 178 80 0 chr13 9779764 9780050 -92093119 + AluJb SINE Alu 1 309 -3 2413 209 103 70 chr13 9780050 9780249 -92092920 + L1ME1 LINE L1 4957 5148 -1018 2267 100 3 0 chr13 9780249 9780549 -92092620 + AluY SINE Alu 1 301 -10 2413 209 103 70 chr13 9780549 9780570 -92092599 + L1ME1 LINE L1 5148 5167 -999 784 161 8 0 chr13 9780570 9780694 -92092475 + FLAM_C SINE Alu 1 125 -8 2413 209 103 70 chr13 9780694 9781071 -92092098 + L1ME1 LINE L1 5167 5530 -636 2326 97 0 13 chr13 9781071 9781381 -92091788 + AluSx SINE Alu 1 306 -6 2413 209 103 70 chr13 9781381 9781870 -92091299 + L1ME1 LINE L1 5530 6091 -75 1765 136 11 18 chr13 9781875 9782154 -92091015 + AluJo SINE Alu 1 277 -35 651 184 32 16 chr13 9782194 9782319 -92090850 + FLAM_A SINE Alu 1 127 -6 266 184 92 13 chr13 9782372 9782448 -92090721 + L1MB7 LINE L1 6103 6184 0 402 338 91 29 chr13 9782448 9782679 -92090490 + L2 LINE L2 2305 2520 -794 2511 120 2 85 chr13 9782679 9782730 -92090439 - L1MB3 LINE L1 -2 6181 6127 2431 72 3 0 chr13 9782730 9783023 -92090146 - AluSp SINE Alu -19 294 1 2511 120 2 85 chr13 9783023 9783454 -92089715 - L1MB3 LINE L1 -56 6127 5739 402 338 91 29 chr13 9783454 9783630 -92089539 + L2 LINE L2 2520 2737 -577 995 281 131 30 chr13 9783700 9783829 -92089340 - L3 LINE CR1 -163 1414 1299 2531 77 0 0 chr13 9783829 9784140 -92089029 - AluY SINE Alu 0 311 1 995 281 131 30 chr13 9784140 9784477 -92088692 - L3 LINE CR1 -278 1299 901 1482 75 0 21 chr13 9785621 9785808 -92087361 - AluSg/x SINE Alu -44 268 86 5427 105 0 4 chr13 9785808 9786563 -92086606 - L1PA15 LINE L1 -1 6164 5413 877 144 0 0 chr13 9786565 9786690 -92086479 + AluSg/x SINE Alu 164 288 -22 2080 132 0 0 chr13 9787103 9787424 -92085745 - AluSx SINE Alu 0 321 1 2176 118 0 35 chr13 9787426 9787740 -92085429 - AluSx SINE Alu -9 303 1 1597 213 2 82 chr13 9788401 9788818 -92084351 + MSTD LTR MaLR 13 396 0 875 197 0 0 chr13 9788858 9789010 -92084159 - AluJo/FRAM SINE Alu -14 288 137 1340 123 5 0 chr13 9789013 9789200 -92083969 - AluSg/x SINE Alu -7 303 116 998 101 0 0 chr13 9789200 9789338 -92083831 - AluSg/x SINE Alu -12 298 161 982 187 17 74 chr13 9789364 9789594 -92083575 - AluJo SINE Alu -92 220 4 207 0 0 0 chr13 9789823 9789846 -92083323 + (TTTAG)n Simple_repeat Simple_repeat 1 23 0 331 167 83 0 chr13 9789846 9789906 -92083263 - AluSg/x SINE Alu -21 279 215 29 28 0 0 chr13 9790005 9790041 -92083128 + AT_rich Low_complexity Low_complexity 1 36 0 500 185 11 0 chr13 9790700 9790792 -92082377 - L2 LINE L2 0 3313 3221 582 212 0 103 chr13 9791104 9791318 -92081851 - AluSg/x SINE Alu 0 329 133 277 324 171 0 chr13 9792773 9792878 -92080291 + MER5B DNA MER1_type 4 126 -52 323 167 0 14 chr13 9792933 9793005 -92080164 + CT-rich Low_complexity Low_complexity 1 71 0 804 149 0 0 chr13 9793005 9793119 -92080050 - FLAM_A SINE Alu -17 125 12 258 130 19 37 chr13 9793142 9793196 -92079973 + MER5B DNA MER1_type 126 178 0 1471 147 34 8 chr13 9793541 9793807 -92079362 - AluSp SINE Alu -19 294 22 3638 137 97 9 chr13 9794734 9795404 -92077765 - L1MB4 LINE L1 0 6180 5452 21 0 0 0 chr13 9797909 9797930 -92075239 + AT_rich Low_complexity Low_complexity 1 21 0 1798 175 243 109 chr13 9798218 9798990 -92074179 - MER52C LTR ERV1 0 1278 211 226 302 101 0 chr13 9799418 9799547 -92073622 - MIR SINE MIR 0 262 121 259 176 39 0 chr13 9800093 9800144 -92073025 - L1ME LINE L1 -477 5644 5592 234 328 47 8 chr13 9800359 9800487 -92072682 - L2 LINE L2 -9 3304 3172 2681 209 59 13 chr13 9800513 9800894 -92072275 + MER82 DNA MER2_type 1 422 -231 2531 65 0 0 chr13 9800894 9801204 -92071965 + AluY SINE Alu 1 310 -1 2681 209 59 13 chr13 9801204 9801433 -92071736 + MER82 DNA MER2_type 422 639 -14 1854 146 4 4 chr13 9801571 9801845 -92071324 - AluSx SINE Alu -36 276 3 397 200 0 0 chr13 9801847 9801917 -92071252 + MLT1A1 LTR MaLR 296 365 0 1983 281 177 29 chr13 9802009 9803574 -92069595 - L2 LINE L2 -1278 2036 240 2201 143 0 0 chr13 9803644 9803952 -92069217 + AluSx SINE Alu 1 308 -4 347 152 105 0 chr13 9803985 9804051 -92069118 - AluJ/FLAM SINE Alu -240 62 1 24 32 0 0 chr13 9804626 9804657 -92068512 + AT_rich Low_complexity Low_complexity 1 31 0 881 177 0 0 chr13 9804693 9804834 -92068335 - AluJo SINE Alu -171 141 1 1646 171 161 18 chr13 9805468 9805902 -92067267 + LTR54B LTR ERV1 1 496 -2 2116 121 3 3 chr13 9806550 9806848 -92066321 - AluSx SINE Alu -14 298 1 209 321 127 19 chr13 9808670 9808882 -92064287 - L2 LINE L2 -23 3249 3015 2294 81 0 16 chr13 9809078 9809387 -92063782 + AluY SINE Alu 1 304 -7 2280 126 3 0 chr13 9809715 9810017 -92063152 - AluSg SINE Alu -7 303 1 286 315 82 7 chr13 9810723 9810869 -92062300 - L1ME LINE L1 -398 5772 5616 666 0 0 0 chr13 9811045 9811119 -92062050 - tRNA-Asn-AAC tRNA tRNA -3 74 1 21 57 0 0 chr13 9811305 9811340 -92061829 + GC_rich Low_complexity Low_complexity 1 35 0 370 213 104 91 chr13 9811643 9811864 -92061305 - MER106A DNA MER1_type -11 225 2 2371 55 26 16 chr13 9811968 9812275 -92060894 - AluSg SINE Alu 0 310 1 3382 148 142 5 chr13 9812279 9812936 -92060233 - L1MB3 LINE L1 -52 6131 5385 1268 72 55 6 chr13 9813468 9813649 -92059520 + AluY SINE Alu 1 190 -121 542 143 59 8 chr13 9813749 9813868 -92059301 + AluY SINE Alu 187 311 0 398 278 24 16 chr13 9814601 9814727 -92058442 + L2 LINE L2 3185 3311 -2 3640 119 88 54 chr13 9814844 9815572 -92057597 + L1MA9 LINE L1 5474 6234 -66 306 0 0 0 chr13 9815572 9815606 -92057563 + (TG)n Simple_repeat Simple_repeat 2 35 0 3640 119 88 54 chr13 9815606 9815671 -92057498 + L1MA9 LINE L1 6234 6295 -5 625 255 75 19 chr13 9815842 9816054 -92057115 + L1ME LINE L1 5566 5789 -332 1767 138 0 44 chr13 9816058 9816190 -92056979 + AluJo SINE Alu 11 147 -165 2018 128 34 0 chr13 9816190 9816487 -92056682 + AluSx SINE Alu 5 311 -1 1767 138 0 44 chr13 9816487 9816651 -92056518 + AluJo SINE Alu 147 294 -18 1611 139 75 78 chr13 9816807 9817181 -92055988 + THE1C LTR MaLR 3 375 0 22 56 0 0 chr13 9817185 9817221 -92055948 + AT_rich Low_complexity Low_complexity 1 36 0 5651 127 14 33 chr13 9817221 9818241 -92054928 - L1PA16 LINE L1 -9 6157 5155 2442 161 47 5 chr13 9818267 9818715 -92054454 - Charlie1b DNA MER1_type -22 501 35 2382 85 0 26 chr13 9819195 9819502 -92053667 + AluSx SINE Alu 1 299 -13 2140 99 28 0 chr13 9819513 9819797 -92053372 + AluSq SINE Alu 3 294 -19 433 307 0 7 chr13 9820979 9821119 -92052050 + MIR3 SINE MIR 63 201 -7 368 300 122 6 chr13 9823008 9823188 -92049981 + MIR SINE MIR 23 223 -39 205 220 0 51 chr13 9823914 9823973 -92049196 + G-rich Low_complexity Low_complexity 3 58 0 285 239 109 0 chr13 9824943 9825035 -92048134 - L2 LINE L2 -5 3267 3166 366 333 35 28 chr13 9825236 9825380 -92047789 - L2 LINE L2 -20 3252 3108 21 0 0 0 chr13 9826234 9826255 -92046914 + AT_rich Low_complexity Low_complexity 1 21 0 1961 125 11 3 chr13 9826256 9826543 -92046626 + AluSx SINE Alu 1 289 -23 446 48 0 16 chr13 9826548 9826610 -92046559 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 312 298 232 33 chr13 9827115 9827417 -92045752 - L3 LINE CR1 -7 1570 1209 2276 116 3 0 chr13 9827468 9827771 -92045398 + AluSx SINE Alu 1 304 -8 1901 143 0 31 chr13 9827782 9828075 -92045094 + AluJb SINE Alu 1 310 0 195 0 39 0 chr13 9828075 9828101 -92045068 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 562 266 129 63 chr13 9828145 9828525 -92044644 - L2 LINE L2 -86 3227 2823 668 282 20 15 chr13 9828552 9828747 -92044422 - L3 LINE CR1 -399 1178 983 2262 77 3 33 chr13 9828816 9829116 -92044053 - AluSx SINE Alu -13 299 9 561 184 123 18 chr13 9829280 9829394 -92043775 - FLAM_A SINE Alu -7 126 1 591 320 110 10 chr13 9829453 9829744 -92043425 - L3 LINE CR1 -708 869 550 344 49 0 0 chr13 9829844 9829885 -92043284 + AluSq/x SINE Alu 111 151 -152 210 118 0 0 chr13 9829886 9829920 -92043249 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2231 116 0 3 chr13 9829927 9830230 -92042939 - AluSx SINE Alu -9 303 2 251 237 26 0 chr13 9830311 9830387 -92042782 + MIR SINE MIR 44 121 -87 3253 257 125 28 chr13 9830464 9831835 -92041334 + HAL1 LINE L1 1 1504 -1003 1808 159 3 41 chr13 9831852 9832216 -92040953 + AluJo SINE Alu 1 352 0 626 153 10 0 chr13 9832306 9832404 -92040765 + FLAM_C SINE Alu 24 122 -21 25 31 0 0 chr13 9832405 9832437 -92040732 + AT_rich Low_complexity Low_complexity 1 32 0 2724 35 0 9 chr13 9832440 9832758 -92040411 + AluYb8 SINE Alu 1 315 -3 207 0 0 0 chr13 9832774 9832797 -92040372 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2221 107 3 0 chr13 9832953 9833262 -92039907 + AluSp SINE Alu 1 310 0 2108 142 3 0 chr13 9833358 9833667 -92039502 + AluSq SINE Alu 1 310 -3 266 73 24 0 chr13 9833667 9833708 -92039461 + (GGA)n Simple_repeat Simple_repeat 1 42 0 1425 232 62 22 chr13 9833716 9834087 -92039082 + L1MD3 LINE L1 7601 7986 -9 2185 108 24 0 chr13 9835534 9835821 -92037348 + AluSx SINE Alu 3 296 -16 1909 166 0 3 chr13 9835946 9836253 -92036916 + AluJb SINE Alu 1 306 -6 2038 157 0 6 chr13 9836402 9836715 -92036454 - AluSx SINE Alu -1 311 1 553 214 132 6 chr13 9836716 9836875 -92036294 - MIR SINE MIR -76 186 8 398 455 56 108 chr13 9837134 9837365 -92035804 + MER20 DNA MER1_type 1 219 0 336 309 50 40 chr13 9838055 9838256 -92034913 + MIR SINE MIR 35 237 -25 1619 267 127 24 chr13 9838523 9838835 -92034334 + MER69 DNA AcHobo 2 280 -2246 1835 172 3 7 chr13 9838835 9839132 -92034037 - AluJb SINE Alu -14 298 3 1619 267 127 24 chr13 9839132 9839411 -92033758 + MER69 DNA AcHobo 280 654 -1872 419 191 134 9 chr13 9839410 9839600 -92033569 + MER69 DNA AcHobo 2238 2525 -1 * 1948 98 68 11 chr13 9839625 9839891 -92033278 - AluSx SINE Alu -13 299 19 22 0 0 0 chr13 9841663 9841685 -92031484 + AT_rich Low_complexity Low_complexity 1 22 0 940 181 62 5 chr13 9842147 9842268 -92030901 - L1PA13 LINE L1 0 6163 6043 2261 133 60 85 chr13 9842268 9842751 -92030418 - L1MB3 LINE L1 -158 6025 5555 1183 184 34 41 chr13 9842751 9843018 -92030151 - AluJo SINE Alu -17 295 31 2362 96 0 10 chr13 9843676 9843979 -92029190 - AluSx SINE Alu -12 300 1 388 283 57 25 chr13 9843981 9844140 -92029029 - L1MD3 LINE L1 -24 7971 7808 2358 89 0 0 chr13 9844208 9844499 -92028670 + AluSx SINE Alu 1 291 -21 401 323 58 35 chr13 9844631 9844857 -92028312 + MIR SINE MIR 20 250 -12 225 0 0 0 chr13 9845715 9845740 -92027429 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 563 267 41 26 chr13 9846252 9846518 -92026651 - L1ME4a LINE L1 -236 5885 5616 1911 133 3 11 chr13 9846527 9846847 -92026322 - AluSx SINE Alu 0 318 1 242 246 35 0 chr13 9847668 9847725 -92025444 + MIR SINE MIR 194 252 -10 200 246 18 0 chr13 9847780 9847837 -92025332 + (TA)n Simple_repeat Simple_repeat 1 58 0 2061 124 0 13 chr13 9848582 9848881 -92024288 - AluSx SINE Alu -17 295 1 344 234 65 57 chr13 9849892 9850016 -92023153 + L2 LINE L2 3170 3294 -19 2336 109 0 0 chr13 9850066 9850370 -92022799 - AluSq SINE Alu -9 304 1 2165 94 35 3 chr13 9850370 9850658 -92022511 - AluSq SINE Alu -16 297 1 205 270 40 40 chr13 9851234 9851308 -92021861 + MER5A DNA MER1_type 47 120 -69 1420 156 37 12 chr13 9851343 9851586 -92021583 + AluJo SINE Alu 3 251 -61 221 219 27 41 chr13 9851612 9851685 -92021484 - MIR SINE MIR -6 256 185 444 271 132 40 chr13 9852148 9852451 -92020718 - MER102b DNA MER1_type -10 331 1 1770 138 57 3 chr13 9852787 9853069 -92020100 - AluJb SINE Alu -15 297 1 216 163 0 0 chr13 9853980 9854023 -92019146 + (CCG)n Simple_repeat Simple_repeat 2 44 0 429 104 0 0 chr13 9854028 9854105 -92019064 + (GGCTG)n Simple_repeat Simple_repeat 3 79 0 1077 156 8 107 chr13 9854441 9854684 -92018485 + MER20 DNA MER1_type 1 219 0 2251 113 0 0 chr13 9855429 9855755 -92017414 - AluSg SINE Alu 0 326 1 22 0 0 0 chr13 9855873 9855895 -92017274 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 9855960 9855982 -92017187 + AT_rich Low_complexity Low_complexity 1 22 0 346 297 163 29 chr13 9856433 9856642 -92016527 - MIR SINE MIR -10 252 16 207 114 45 0 chr13 9858068 9858112 -92015057 + L2 LINE L2 3268 3313 0 705 183 15 22 chr13 9858520 9858657 -92014512 - FLAM_A SINE Alu -6 136 1 2066 89 71 0 chr13 9859737 9860006 -92013163 - AluSc SINE Alu -17 292 5 187 30 30 30 chr13 9860534 9860567 -92012602 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2272 97 0 10 chr13 9860652 9860951 -92012218 + AluSq SINE Alu 1 296 -17 859 120 0 0 chr13 9861170 9861287 -92011882 + FLAM_C SINE Alu 1 117 -16 383 290 32 0 chr13 9861370 9861494 -92011675 - L2 LINE L2 0 3313 3186 520 76 0 0 chr13 9862608 9862674 -92010495 - Alu SINE Alu -15 297 232 2043 115 27 7 chr13 9863253 9863549 -92009620 - AluSx SINE Alu -10 302 1 791 91 16 0 chr13 9863694 9863815 -92009354 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 740 154 0 41 chr13 9863815 9863938 -92009231 - FLAM_C SINE Alu -24 119 2 438 296 89 12 chr13 9863945 9864114 -92009055 - MIR SINE MIR -70 192 11 547 209 27 0 chr13 9864119 9864229 -92008940 + MER81 DNA DNA 2 114 0 647 251 31 44 chr13 9864436 9864663 -92008506 - MER58A DNA MER1_type 0 224 1 2032 152 0 0 chr13 9864813 9865115 -92008054 - AluJb SINE Alu -10 302 1 1033 154 59 0 chr13 9865884 9866053 -92007116 + FRAM SINE Alu 1 173 -3 1703 166 13 23 chr13 9866053 9866355 -92006814 + AluJb SINE Alu 1 299 -13 7127 50 5 8 chr13 9867453 9868901 -92004268 + L1PA6 LINE L1 4674 6144 -10 716 160 0 73 chr13 9869193 9869343 -92003826 + FLAM_C SINE Alu 5 143 0 1805 164 30 52 chr13 9869719 9870050 -92003119 + MLT1B LTR MaLR 2 326 -64 2063 112 25 0 chr13 9870050 9870328 -92002841 + AluSx SINE Alu 1 285 -27 1805 164 30 52 chr13 9870328 9870362 -92002807 + MLT1B LTR MaLR 326 359 -31 1251 214 80 29 chr13 9870362 9870711 -92002458 - L1ME1 LINE L1 -56 6110 5744 1107 185 186 42 chr13 9870745 9871162 -92002007 + MER66B LTR ERV1 97 486 0 3100 210 49 34 chr13 9871162 9871338 -92001831 - L1ME1 LINE L1 -449 5717 5545 2123 120 0 26 chr13 9871338 9871646 -92001523 - AluSx SINE Alu -12 300 1 3100 210 49 34 chr13 9871646 9872536 -92000633 - L1ME1 LINE L1 -621 5545 4697 535 272 36 44 chr13 9872862 9873112 -92000057 - MIR SINE MIR 0 262 15 273 133 0 0 chr13 9873276 9873321 -91999848 - Alu SINE Alu -5 297 253 630 211 9 0 chr13 9873394 9873508 -91999661 - FRAM SINE Alu -61 115 1 333 355 52 0 chr13 9873610 9873782 -91999387 + L2 LINE L2 2271 2451 -863 365 222 214 0 chr13 9873796 9873922 -91999247 + MIR SINE MIR 39 191 -71 216 200 0 0 chr13 9873948 9873993 -91999176 + (TTA)n Simple_repeat Simple_repeat 2 46 0 230 194 75 15 chr13 9874121 9874188 -91998981 + Charlie7 DNA MER1_type 41 111 -2501 231 164 231 0 chr13 9874188 9874292 -91998877 + Charlie7 DNA MER1_type 2443 2570 -42 269 216 99 99 chr13 9874439 9874520 -91998649 - LTR67 LTR ERVL -4 553 473 1028 178 50 0 chr13 9874520 9874700 -91998469 - MER5A DNA MER1_type 0 189 1 269 216 99 99 chr13 9874700 9874799 -91998370 - LTR67 LTR ERVL -83 474 373 560 228 16 79 chr13 9875716 9875767 -91997402 + Tigger5 DNA MER2_type 44 97 -2226 2378 87 0 3 chr13 9875767 9876065 -91997104 + AluSc SINE Alu 1 297 -12 560 228 16 79 chr13 9876065 9876202 -91996967 + Tigger5 DNA MER2_type 97 220 -2103 * 2826 137 22 26 chr13 9876200 9876691 -91996478 + Tigger5 DNA MER2_type 1835 2323 0 1910 121 3 35 chr13 9876815 9877105 -91996064 + AluJo SINE Alu 1 281 -31 486 79 0 0 chr13 9877110 9877186 -91995983 + (GA)n Simple_repeat Simple_repeat 1 76 0 181 279 233 16 chr13 9877394 9877523 -91995646 + MIR SINE MIR 34 190 -72 21 0 0 0 chr13 9877729 9877750 -91995419 + AT_rich Low_complexity Low_complexity 1 21 0 207 222 197 34 chr13 9877752 9877869 -91995300 - L2 LINE L2 -17 3296 3161 2529 50 0 7 chr13 9878734 9879032 -91994137 - AluY SINE Alu -15 296 1 212 167 24 0 chr13 9880558 9880600 -91992569 + MIR SINE MIR 103 145 -117 1003 200 74 13 chr13 9880635 9880865 -91992304 - MIR SINE MIR 0 262 19 2084 130 3 3 chr13 9881949 9882257 -91990912 - AluSx SINE Alu -4 308 1 912 191 6 0 chr13 9882348 9882505 -91990664 - FRAM SINE Alu -19 157 1 232 370 96 18 chr13 9882515 9882902 -91990267 - L2 LINE L2 -609 2705 2289 2417 100 0 0 chr13 9883325 9883635 -91989534 - AluSx SINE Alu -2 310 1 2068 124 7 10 chr13 9884141 9884440 -91988729 - AluSx SINE Alu -14 298 1 234 0 0 0 chr13 9884913 9884939 -91988230 + (TA)n Simple_repeat Simple_repeat 2 27 0 2147 137 0 3 chr13 9885076 9885383 -91987786 + AluSx SINE Alu 1 306 -6 280 226 32 0 chr13 9885482 9885544 -91987625 - L3 LINE CR1 -91 1486 1423 540 270 100 50 chr13 9885676 9885917 -91987252 + MIR SINE MIR 10 262 0 201 255 20 0 chr13 9885915 9885966 -91987203 + L2 LINE L2 3176 3227 -86 * 1233 156 24 0 chr13 9886399 9886604 -91986565 + L1MA6 LINE L1 6087 6296 -4 24 0 0 0 chr13 9886604 9886628 -91986541 + AT_rich Low_complexity Low_complexity 1 24 0 299 271 35 12 chr13 9887351 9887436 -91985733 - MER63 DNA MER1_type -123 713 1 656 254 98 5 chr13 9888244 9888449 -91984720 + L1ME2 LINE L1 5940 6163 -1 256 304 62 9 chr13 9888454 9888566 -91984603 + MIR SINE MIR 51 168 -94 1412 157 124 15 chr13 9889221 9889495 -91983674 - AluJo SINE Alu -8 304 1 25 0 0 0 chr13 9890093 9890118 -91983051 + AT_rich Low_complexity Low_complexity 1 25 0 2273 117 3 0 chr13 9890176 9890484 -91982685 - AluSc SINE Alu 0 309 1 264 202 183 39 chr13 9891394 9891498 -91981671 - LTR67 LTR ERVL -7 550 432 420 327 75 53 chr13 9891854 9892215 -91980954 + L3 LINE CR1 1081 1449 -128 335 103 73 0 chr13 9892678 9892746 -91980423 + L1MA8 LINE L1 6219 6291 0 299 340 110 11 chr13 9892771 9892962 -91980207 - L3 LINE CR1 -17 1560 1351 813 280 76 20 chr13 9892966 9893323 -91979846 + L1MC4a LINE L1 5574 5950 -1858 297 209 0 0 chr13 9893421 9893488 -91979681 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1940 158 0 3 chr13 9893489 9893786 -91979383 - AluJb SINE Alu -16 296 1 308 328 55 0 chr13 9893886 9894014 -91979155 - L3 LINE CR1 -252 1325 1191 219 36 0 0 chr13 9894240 9894268 -91978901 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 1269 180 14 9 chr13 9894522 9894739 -91978430 + AluJo SINE Alu 1 218 -94 251 175 0 0 chr13 9894740 9894780 -91978389 + AluJo/FLAM SINE Alu 85 124 -178 1839 154 3 26 chr13 9894781 9895092 -91978077 - AluJb SINE Alu -8 304 1 866 153 73 0 chr13 9895105 9895242 -91977927 - AluJo/FRAM SINE Alu -30 282 136 319 230 40 0 chr13 9895245 9895319 -91977850 + AluJ/FRAM SINE Alu 226 302 0 1798 141 19 56 chr13 9897356 9897676 -91975493 - AluSx SINE Alu -4 308 1 357 248 137 72 chr13 9897688 9897950 -91975219 - HAL1 LINE L1 -2 2505 2227 446 215 8 99 chr13 9897986 9898173 -91974996 - MER104 DNA Tc2 0 182 14 1340 245 153 30 chr13 9898198 9899010 -91974159 - HAL1 LINE L1 -335 2172 579 1117 189 159 0 chr13 9899034 9899267 -91973902 + AluJo SINE Alu 5 274 -38 491 249 98 108 chr13 9899342 9899751 -91973418 - HAL1 LINE L1 -2002 505 101 1712 204 31 64 chr13 9899753 9899930 -91973239 + MER63B DNA MER1_type 1 182 -880 1741 167 101 12 chr13 9899930 9900210 -91972959 + MER47A DNA MER2_type 1 317 -2006 2209 141 0 3 chr13 9900210 9900523 -91972646 - AluSx SINE Alu 0 312 1 1741 167 101 12 chr13 9900523 9900578 -91972591 + MER47A DNA MER2_type 317 366 0 1712 204 31 64 chr13 9900578 9900693 -91972476 + MER63B DNA MER1_type 182 299 -763 2129 117 3 0 chr13 9900693 9900996 -91972173 - AluSx SINE Alu 0 304 1 1712 204 31 64 chr13 9900996 9901151 -91972018 + MER63B DNA MER1_type 299 436 0 1976 133 30 13 chr13 9901566 9901866 -91971303 - AluSx SINE Alu -7 305 1 2336 93 0 0 chr13 9902437 9902727 -91970442 + AluSx SINE Alu 1 290 -22 250 136 0 0 chr13 9902747 9902791 -91970378 - MADE1 DNA Mariner -36 44 1 504 280 86 35 chr13 9902935 9903167 -91970002 - MIR SINE MIR 0 262 19 2086 131 24 0 chr13 9903448 9903739 -91969430 + AluSx SINE Alu 1 298 -14 1093 136 0 6 chr13 9904001 9904163 -91969006 - FRAM SINE Alu -2 164 4 2374 143 27 48 chr13 9904670 9905111 -91968058 - MSTB1 LTR MaLR 0 432 1 1515 209 111 55 chr13 9905967 9906480 -91966689 + MLT1F LTR MaLR 1 542 0 849 256 92 50 chr13 9906993 9907410 -91965759 - L1ME4a LINE L1 -65 6056 5608 1979 122 3 11 chr13 9907410 9907730 -91965439 - AluSx SINE Alu 0 318 1 849 256 92 50 chr13 9907730 9907866 -91965303 - L1ME4a LINE L1 -513 5608 5479 1841 194 0 0 chr13 9907953 9908263 -91964906 + AluJb SINE Alu 1 310 -2 249 83 0 0 chr13 9908268 9908304 -91964865 + (GGAGA)n Simple_repeat Simple_repeat 4 39 0 339 277 106 83 chr13 9908638 9908977 -91964192 + L1ME4a LINE L1 5709 6055 -66 325 274 72 13 chr13 9909489 9909642 -91963527 + MIR SINE MIR 21 182 -80 1836 176 6 35 chr13 9911423 9911770 -91961399 + MER58B DNA MER1_type 2 338 -3 272 281 203 40 chr13 9912108 9912457 -91960712 - L2 LINE L2 -818 2496 2091 397 247 10 10 chr13 9912460 9912557 -91960612 + L2 LINE L2 3206 3302 -11 209 271 29 0 chr13 9912644 9912714 -91960455 + CT-rich Low_complexity Low_complexity 2 73 0 478 294 28 5 chr13 9913474 9913670 -91959499 - MIR SINE MIR -33 229 30 212 275 132 47 chr13 9913732 9913990 -91959179 + L2 LINE L2 2196 2475 -839 240 222 19 0 chr13 9914159 9914213 -91958956 - MER5B DNA MER1_type -3 175 121 421 166 237 43 chr13 9914722 9914861 -91958308 - MER103 DNA DNA 0 166 1 356 193 2 0 chr13 9914955 9915026 -91958143 - HsTC2 DNA Tc2 -1810 88 17 240 196 65 43 chr13 9915482 9915574 -91957595 - L1MC4 LINE L1 -1334 6708 6615 2265 104 13 3 chr13 9915574 9915881 -91957288 - AluSx SINE Alu -2 310 1 340 203 133 91 chr13 9916017 9916275 -91956894 - MLT1J LTR MaLR -71 538 234 1401 197 65 49 chr13 9917119 9917550 -91955619 + L1MC5 LINE L1 7189 7626 -335 807 224 23 66 chr13 9917659 9917962 -91955207 + L1MC5 LINE L1 7642 7931 -30 356 259 56 1 chr13 9918015 9918173 -91954996 + MER69A DNA AcHobo 1 177 0 735 179 8 22 chr13 9918231 9918365 -91954804 - FLAM_A SINE Alu -1 132 1 260 278 0 0 chr13 9918483 9918537 -91954632 + polypyrimidine Low_complexity Low_complexity 1 54 0 266 247 0 22 chr13 9918568 9918657 -91954512 - L1MC5 LINE L1 -271 7690 7604 1649 164 35 60 chr13 9919188 9919585 -91953584 - MLT1B LTR MaLR 0 390 4 1740 213 35 72 chr13 9920817 9920999 -91952170 - LTR40a LTR ERVL 0 519 332 2875 10 0 0 chr13 9920999 9921307 -91951862 + AluYa5 SINE Alu 1 308 -3 1740 213 35 72 chr13 9921307 9921618 -91951551 - LTR40a LTR ERVL -187 332 45 1908 142 0 44 chr13 9921618 9921936 -91951233 + AluSx SINE Alu 1 304 -8 1740 213 35 72 chr13 9921936 9921980 -91951189 - LTR40a LTR ERVL -474 45 1 289 241 0 0 chr13 9922455 9922509 -91950660 - MIR3 SINE MIR -23 185 132 1395 167 13 0 chr13 9922560 9922794 -91950375 + L1ME2 LINE L1 5550 5786 -378 399 78 39 0 chr13 9922797 9922874 -91950295 + (TA)n Simple_repeat Simple_repeat 1 80 0 499 258 88 32 chr13 9922895 9923112 -91950057 + L1ME2 LINE L1 5789 6017 -147 243 91 0 0 chr13 9923116 9923149 -91950020 + MER3 DNA MER1_type 17 49 -160 376 267 43 0 chr13 9923244 9923360 -91949809 + MER103 DNA DNA 36 156 -10 2183 92 17 10 chr13 9923874 9924169 -91949000 - AluY SINE Alu -14 297 1 642 239 32 21 chr13 9924948 9925136 -91948033 - L1ME1 LINE L1 -104 6062 5873 1489 223 67 61 chr13 9925145 9926064 -91947105 - L1MDb LINE L1 -4524 1882 789 279 296 0 23 chr13 9926671 9926759 -91946410 - L1MDb LINE L1 -5935 461 376 217 284 52 52 chr13 9927962 9928078 -91945091 - L2 LINE L2 -4 3268 3153 265 343 33 33 chr13 9928127 9928337 -91944832 + L2 LINE L2 2431 2640 -674 223 362 110 8 chr13 9928708 9928835 -91944334 - L2 LINE L2 0 3272 3133 222 305 78 21 chr13 9928910 9929051 -91944118 - L2 LINE L2 -180 3092 2944 197 215 25 51 chr13 9929165 9929244 -91943925 + L3 LINE CR1 1458 1534 -43 2328 99 0 3 chr13 9929310 9929613 -91943556 + AluSx SINE Alu 1 302 -10 388 197 114 68 chr13 9930035 9930167 -91943002 - MER5A DNA MER1_type -49 140 3 182 211 0 26 chr13 9930246 9930284 -91942885 - L3 LINE CR1 -20 1557 1521 183 300 38 50 chr13 9931526 9931606 -91941563 + L2 LINE L2 3110 3188 -84 596 304 60 0 chr13 9931803 9932020 -91941149 - MIR SINE MIR 0 262 33 32 26 0 0 chr13 9933039 9933078 -91940091 + AT_rich Low_complexity Low_complexity 1 39 0 690 217 29 11 chr13 9933650 9933825 -91939344 - MER5B DNA MER1_type 0 178 1 196 213 26 174 chr13 9934039 9934143 -91939026 - MIR SINE MIR -29 233 158 2355 85 0 7 chr13 9934143 9934438 -91938731 - AluSc SINE Alu -16 293 1 196 213 26 174 chr13 9934438 9934488 -91938681 - MIR SINE MIR -104 158 102 1758 126 52 15 chr13 9934490 9934761 -91938408 + AluJo SINE Alu 1 281 -31 283 337 12 12 chr13 9934779 9934865 -91938304 - MIR SINE MIR -93 115 30 519 253 39 19 chr13 9934892 9935046 -91938123 + MIR SINE MIR 53 209 -53 2575 58 0 3 chr13 9935658 9935968 -91937201 + AluY SINE Alu 1 309 -2 550 293 67 54 chr13 9936232 9936618 -91936551 - L2 LINE L2 0 3272 2882 1449 146 34 15 chr13 9936738 9937005 -91936164 + MLT1E LTR MaLR 318 589 -4 357 313 141 15 chr13 9937121 9937575 -91935594 + L1MC4a LINE L1 5446 5574 -592 584 218 51 20 chr13 9939623 9939820 -91933349 - LTR33A LTR ERVL -2 521 319 660 246 221 28 chr13 9939830 9940220 -91932949 - LTR50 LTR ERVL -330 465 1 2265 125 34 0 chr13 9942178 9942530 -91930639 - THE1B LTR MaLR 0 364 1 292 244 81 12 chr13 9943310 9943396 -91929773 + MIR3 SINE MIR 111 202 -6 588 243 113 0 chr13 9943428 9943613 -91929556 - L1ME3 LINE L1 -8 6154 5949 373 317 118 14 chr13 9943613 9943834 -91929335 - MIR SINE MIR -3 259 16 225 0 0 0 chr13 9944477 9944502 -91928667 + (CGG)n Simple_repeat Simple_repeat 1 25 0 23 54 0 0 chr13 9945607 9945644 -91927525 + AT_rich Low_complexity Low_complexity 1 37 0 293 255 122 10 chr13 9946023 9946121 -91927048 - L2 LINE L2 0 3313 3205 459 270 163 19 chr13 9946193 9946408 -91926761 - MIR SINE MIR -4 258 13 271 363 38 47 chr13 9946422 9946634 -91926535 - L2 LINE L2 -191 3081 2872 747 326 103 44 chr13 9946660 9947313 -91925856 - L2 LINE L2 -493 2821 2131 2267 110 0 0 chr13 9947332 9947631 -91925538 + AluSc SINE Alu 1 299 -10 982 172 12 0 chr13 9948317 9948480 -91924689 - FRAM SINE Alu -12 164 1 181 231 96 19 chr13 9948728 9948780 -91924389 + L3 LINE CR1 1513 1568 -9 1740 172 0 10 chr13 9949728 9950024 -91923145 + AluJb SINE Alu 3 295 -17 520 282 120 37 chr13 9950225 9950466 -91922703 + MIR SINE MIR 2 262 0 2188 99 7 7 chr13 9950512 9950815 -91922354 - AluSq SINE Alu -10 303 1 337 288 80 0 chr13 9952542 9952667 -91920502 - MIR SINE MIR -72 190 56 374 287 76 36 chr13 9952668 9952891 -91920278 - L1MEc LINE L1 -906 1584 1359 692 240 128 34 chr13 9952930 9953314 -91919855 - L1MEc LINE L1 -4883 1236 817 780 202 71 0 chr13 9953489 9953672 -91919497 + L1ME1 LINE L1 5751 5946 -220 1949 118 29 52 chr13 9953673 9953872 -91919297 - Tigger1 DNA MER2_type 0 2418 2229 4290 115 45 0 chr13 9953872 9954515 -91918654 - L1PA16 LINE L1 -7 6159 5488 1949 118 29 52 chr13 9954515 9954664 -91918505 - Tigger1 DNA MER2_type -189 2229 2078 223 177 32 0 chr13 9954666 9954728 -91918441 + CT-rich Low_complexity Low_complexity 3 66 0 970 144 0 50 chr13 9954730 9954890 -91918279 - FRAM SINE Alu -2 174 23 823 165 0 0 chr13 9955846 9955979 -91917190 - FLAM_C SINE Alu 0 133 1 1767 102 30 16 chr13 9955982 9956286 -91916883 - Tigger1 DNA MER2_type -330 2088 1781 841 163 0 0 chr13 9956286 9956415 -91916754 - FLAM_C SINE Alu -10 133 5 10833 126 25 1 chr13 9956419 9958170 -91914999 - Tigger1 DNA MER2_type -625 1793 1 703 196 11 34 chr13 9958199 9958378 -91914791 + L1ME1 LINE L1 5987 6161 -5 584 186 138 38 chr13 9958386 9958596 -91914573 + L1ME3 LINE L1 5931 6161 -1 1619 242 117 31 chr13 9958600 9959277 -91913892 + HAL1 LINE L1 1095 1829 -678 900 237 57 16 chr13 9959279 9959524 -91913645 + LTR40a LTR ERVL 108 362 -157 3720 209 48 84 chr13 9959543 9959852 -91913317 - L1M4 LINE L1 -1094 5052 4733 2160 115 3 0 chr13 9959852 9960147 -91913022 - AluSp SINE Alu -17 296 1 3720 209 48 84 chr13 9960147 9961318 -91911851 - L1M4 LINE L1 -1413 4733 3626 643 234 30 24 chr13 9961480 9961775 -91911394 - L1M4 LINE L1 -2789 3357 3061 11249 171 64 7 chr13 9961780 9964069 -91909100 + Cheshire DNA MER1_type 1 2420 0 1896 113 85 25 chr13 9964339 9964693 -91908476 - THE1C LTR MaLR 0 375 1 9848 112 35 36 chr13 9964695 9966275 -91906894 - THE1C-int LTR MaLR -2 1578 1 1765 135 76 22 chr13 9966275 9966631 -91906538 - THE1C LTR MaLR 0 375 1 1921 142 57 0 chr13 9967741 9968023 -91905146 + AluSx SINE Alu 1 298 -14 2382 104 3 0 chr13 9968605 9968913 -91904256 - AluSg SINE Alu -1 309 1 2586 58 0 3 chr13 9968916 9969228 -91903941 - AluY SINE Alu 0 311 1 1901 178 0 9 chr13 9969230 9969545 -91903624 - AluJo SINE Alu 0 312 1 23 54 0 0 chr13 9969839 9969876 -91903293 + AT_rich Low_complexity Low_complexity 1 37 0 528 209 19 0 chr13 9970031 9970136 -91903033 - U6 snRNA snRNA 0 107 1 968 148 65 0 chr13 9970748 9970903 -91902266 - FRAM SINE Alu 0 40 1 218 310 69 103 chr13 9972572 9972688 -91900481 + L2 LINE L2 3160 3271 -1 2816 13 0 0 chr13 9973889 9974199 -91898970 - AluYa5 SINE Alu -1 310 1 487 270 72 2 chr13 9974424 9974576 -91898593 + MIR SINE MIR 10 174 -62 459 254 48 38 chr13 9974864 9975124 -91898045 - MIR SINE MIR -34 228 3 189 74 0 0 chr13 9975357 9975384 -91897785 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr13 9975680 9975701 -91897468 + AT_rich Low_complexity Low_complexity 1 21 0 2027 137 37 8 chr13 9976032 9976413 -91896756 - L1MA9 LINE L1 -5 6307 5916 2267 162 32 5 chr13 9976413 9976815 -91896354 + MSTB LTR MaLR 1 413 -13 385 171 267 0 chr13 9976849 9976954 -91896215 - L1MA9 LINE L1 -391 5921 5789 414 134 0 0 chr13 9976954 9977021 -91896148 + (TG)n Simple_repeat Simple_repeat 1 67 0 1241 120 42 25 chr13 9977040 9977281 -91895888 - L1MA9 LINE L1 -524 5788 5544 242 314 118 0 chr13 9977705 9977807 -91895362 + MIR SINE MIR 30 143 -65 205 306 102 20 chr13 9977845 9977943 -91895226 - L2 LINE L2 -25 3288 3183 500 245 57 25 chr13 9978320 9978479 -91894690 - MIR SINE MIR -2 260 97 * 1529 262 112 9 chr13 9978475 9979037 -91894132 - L2 LINE L2 -1336 1978 1359 2466 88 0 0 chr13 9979478 9979785 -91893384 - AluSg SINE Alu -3 307 1 210 143 0 0 chr13 9980002 9980037 -91893132 + (T)n Simple_repeat Simple_repeat 1 35 0 2238 111 91 38 chr13 9980199 9980597 -91892572 + MSTA LTR MaLR 1 419 -9 623 265 71 10 chr13 9980597 9980793 -91892376 + MIR SINE MIR 52 259 -3 * 998 238 44 102 chr13 9980773 9980976 -91892193 + L2 LINE L2 2927 3095 -218 8453 21 14 276 chr13 9980976 9982849 -91890320 - SVA Other Other -2 1384 3 998 238 44 102 chr13 9982849 9983056 -91890113 + L2 LINE L2 3095 3313 0 320 282 184 29 chr13 9983205 9983411 -91889758 - L1MDa LINE L1 -4591 1949 1712 1138 276 127 34 chr13 9983511 9984250 -91888919 - L1MDa LINE L1 -5281 1249 442 26 88 0 0 chr13 9985389 9985457 -91887712 + AT_rich Low_complexity Low_complexity 1 68 0 22 0 0 0 chr13 9985487 9985509 -91887660 + AT_rich Low_complexity Low_complexity 1 22 0 1787 120 50 0 chr13 9985591 9985850 -91887319 + AluSx SINE Alu 1 272 -40 2293 110 0 3 chr13 9985856 9986164 -91887005 - AluSp SINE Alu -6 307 1 207 125 0 0 chr13 9986466 9986506 -91886663 + (T)n Simple_repeat Simple_repeat 1 40 0 40552 34 23 2 chr13 9986509 9992533 -91880636 - L1PA3 LINE L1 -4 6151 1 2042 151 0 0 chr13 9992536 9992834 -91880335 - AluSx SINE Alu -14 298 1 846 222 40 79 chr13 9993042 9993376 -91879793 + L1M4 LINE L1 4865 5180 -966 381 121 45 0 chr13 9993376 9993442 -91879727 + L1PA11 LINE L1 6103 6171 -3 846 222 40 79 chr13 9993442 9993535 -91879634 + L1M4 LINE L1 5180 5275 -871 189 107 0 0 chr13 9995173 9995201 -91877968 + (T)n Simple_repeat Simple_repeat 1 28 0 201 154 0 0 chr13 9996230 9996269 -91876900 + T-rich Low_complexity Low_complexity 2 40 0 432 263 132 0 chr13 9997835 9997987 -91875182 - MIR SINE MIR -14 248 77 1669 86 9 9 chr13 9998207 9998427 -91874742 - AluY SINE Alu -11 300 81 2224 113 0 13 chr13 9998842 9999152 -91874017 + AluSx SINE Alu 1 306 -6 226 279 73 30 chr13 9999249 9999414 -91873755 - MER112 DNA MER1_type -88 172 1 186 266 0 78 chr13 9999432 9999496 -91873673 - MIR SINE MIR -62 146 88 366 330 144 9 chr13 9999601 9999816 -91873353 - MIR SINE MIR -15 247 4 238 351 53 0 chr13 10000057 10000151 -91873018 - L2 LINE L2 -5 3308 3210 1727 198 34 3 chr13 10000197 10000551 -91872618 - MLT1A1 LTR MaLR 0 365 1 2468 59 0 7 chr13 10000730 10001034 -91872135 - AluY SINE Alu -9 302 1 2313 208 94 3 chr13 10001479 10002062 -91871107 + MER63 DNA MER1_type 425 1060 0 1850 225 92 26 chr13 10002083 10002645 -91870524 - L1ME3A LINE L1 -95 6075 5485 2124 101 0 39 chr13 10002645 10002817 -91870352 - AluSq SINE Alu -17 296 140 2399 71 0 0 chr13 10002817 10003114 -91870055 - AluY SINE Alu -14 297 1 2124 101 0 39 chr13 10003114 10003248 -91869921 - AluSq SINE Alu -173 140 2 1850 225 92 26 chr13 10003248 10003417 -91869752 - L1ME3A LINE L1 -685 5485 5329 867 262 86 11 chr13 10004058 10004325 -91868844 + L2 LINE L2 2675 2961 -353 599 206 90 13 chr13 10004318 10004473 -91868696 + L2 LINE L2 3142 3308 -5 * 941 236 94 9 chr13 10004719 10004952 -91868217 + MIR SINE MIR 10 262 0 14778 79 15 6 chr13 10005018 10007309 -91865860 - L1PA7 LINE L1 -697 5475 3170 5296 46 8 3 chr13 10007309 10007963 -91865206 + L1PA7 LINE L1 5497 6154 0 543 333 179 6 chr13 10008137 10008455 -91864714 - L3 LINE CR1 -124 1453 1081 218 322 92 11 chr13 10008510 10008597 -91864572 + MIR SINE MIR 39 132 -76 184 377 9 9 chr13 10009085 10009191 -91863978 + MIR SINE MIR 46 151 -57 376 324 69 6 chr13 10009318 10009491 -91863678 + L2 LINE L2 3119 3302 -11 22 0 0 0 chr13 10010678 10010700 -91862469 + AT_rich Low_complexity Low_complexity 1 22 0 2273 108 0 0 chr13 10011896 10012193 -91860976 + AluSc SINE Alu 1 297 -12 2003 155 0 0 chr13 10012453 10012750 -91860419 - AluSx SINE Alu -15 297 1 335 260 52 10 chr13 10012832 10012928 -91860241 - MIR3 SINE MIR -9 199 100 807 233 73 5 chr13 10013430 10013636 -91859533 + MIR SINE MIR 2 221 -41 225 327 140 37 chr13 10014645 10014752 -91858417 - L2 LINE L2 -12 3260 3143 554 343 70 44 chr13 10014858 10015480 -91857689 - L2 LINE L2 -190 3082 2438 858 242 51 142 chr13 10015490 10015699 -91857470 - MER21B LTR ERV1 -157 706 480 1639 212 66 7 chr13 10015699 10016109 -91857060 + Tigger2a DNA MER2_type 1 434 0 858 242 51 142 chr13 10016109 10016320 -91856849 - MER21B LTR ERV1 -383 480 412 2041 154 68 39 chr13 10016320 10016735 -91856434 + MSTB1 LTR MaLR 4 430 -2 858 242 51 142 chr13 10016735 10017092 -91856077 - MER21B LTR ERV1 -451 412 24 4219 158 36 20 chr13 10017676 10019031 -91854138 - L1MA4 LINE L1 -7 6298 4888 270 252 171 0 chr13 10019031 10019154 -91854015 - L2 LINE L2 -1594 1720 1577 25 0 0 0 chr13 10020344 10020369 -91852800 + AT_rich Low_complexity Low_complexity 1 25 0 317 234 13 0 chr13 10021010 10021087 -91852082 - L1MC5 LINE L1 -44 7917 7840 205 349 94 9 chr13 10021542 10021648 -91851521 - L2 LINE L2 -1 3312 3198 1833 150 65 106 chr13 10021663 10022144 -91851025 + Charlie1b DNA MER1_type 7 465 -2296 1805 177 7 7 chr13 10022144 10022438 -91850731 - AluJb SINE Alu -18 294 1 1833 150 65 106 chr13 10022438 10022495 -91850674 + Charlie1b DNA MER1_type 465 523 0 1715 205 0 0 chr13 10022823 10023126 -91850043 + AluJo SINE Alu 1 303 -9 323 219 0 41 chr13 10023474 10023547 -91849622 + AluSg/x SINE Alu 217 286 -14 189 107 0 0 chr13 10024098 10024126 -91849043 + (A)n Simple_repeat Simple_repeat 1 28 0 1892 175 3 0 chr13 10024786 10025083 -91848086 - AluSx SINE Alu -14 298 1 2796 206 133 9 chr13 10025150 10026191 -91846978 - L1ME2 LINE L1 -10 6223 5002 297 0 0 0 chr13 10026191 10026224 -91846945 + (TG)n Simple_repeat Simple_repeat 2 34 0 2796 206 133 9 chr13 10026224 10026376 -91846793 - L1ME2 LINE L1 -1231 5002 4870 1094 257 149 55 chr13 10026487 10027036 -91846133 - MLT2F LTR ERVL -58 605 5 2486 237 63 49 chr13 10027040 10027322 -91845847 - L1ME2 LINE L1 -2802 3413 3136 1590 173 52 28 chr13 10027322 10027611 -91845558 - AluJo SINE Alu -16 296 1 2486 237 63 49 chr13 10027611 10028404 -91844765 - L1ME2 LINE L1 -3079 3136 2356 2382 58 0 10 chr13 10028404 10028696 -91844473 - AluY SINE Alu -5 306 18 2486 237 63 49 chr13 10028696 10028758 -91844411 - L1ME2 LINE L1 -3859 2356 2296 2089 129 0 7 chr13 10028758 10029060 -91844109 - AluSx SINE Alu -12 300 1 2486 237 63 49 chr13 10029060 10029297 -91843872 - L1ME2 LINE L1 -3919 2296 2042 544 273 16 38 chr13 10029318 10029374 -91843795 + MLT1F LTR MaLR 356 412 -130 1575 187 38 106 chr13 10029374 10029795 -91843374 - MLT2C2 LTR ERVL 0 464 81 2076 146 3 0 chr13 10029795 10030096 -91843073 - AluSp SINE Alu -6 307 6 1575 187 38 106 chr13 10030096 10030172 -91842997 - MLT2C2 LTR ERVL -383 81 1 544 273 16 38 chr13 10030172 10030298 -91842871 + MLT1F LTR MaLR 412 534 -8 337 310 78 31 chr13 10030312 10030441 -91842728 - L1ME2 LINE L1 -5472 924 790 289 276 31 16 chr13 10030527 10030654 -91842515 - L1ME2 LINE L1 -6233 163 35 2087 139 3 3 chr13 10030873 10031182 -91841987 + AluSx SINE Alu 2 310 -2 2156 135 0 0 chr13 10031389 10031692 -91841477 - AluSx SINE Alu -9 303 1 198 260 27 41 chr13 10032231 10032304 -91840865 - L2 LINE L2 0 3272 3201 212 333 0 32 chr13 10032425 10032518 -91840651 - L2 LINE L2 -188 3084 2995 22 56 0 0 chr13 10032679 10032715 -91840454 + AT_rich Low_complexity Low_complexity 1 36 0 668 252 100 21 chr13 10032910 10033398 -91839771 - MLT1G1 LTR MaLR -5 590 5 225 0 0 0 chr13 10033642 10033667 -91839502 + (TA)n Simple_repeat Simple_repeat 2 26 0 473 215 185 8 chr13 10034033 10034163 -91839006 - MIR SINE MIR -10 252 100 2279 75 0 7 chr13 10034410 10034702 -91838467 - AluY SINE Alu -21 290 1 451 203 42 2 chr13 10035683 10035796 -91837373 - L1ME3A LINE L1 -221 5949 5832 2115 148 33 41 chr13 10035855 10035937 -91837232 - MLT1B LTR MaLR -2 388 307 18408 27 1 1 chr13 10035937 10038763 -91834406 - L1PA3 LINE L1 -3 6152 3326 2115 148 33 41 chr13 10038763 10039071 -91834098 - MLT1B LTR MaLR -83 307 1 570 230 102 40 chr13 10039071 10039297 -91833872 - L1ME3A LINE L1 -372 5798 5559 1008 158 32 5 chr13 10039311 10039501 -91833668 - MER52A LTR ERV1 -51 1704 1510 1739 293 42 15 chr13 10039501 10040244 -91832925 - L1ME3A LINE L1 -831 5315 4553 601 214 173 88 chr13 10040234 10040678 -91832491 + L1MC4 LINE L1 7560 8041 -1 * 180 0 0 0 chr13 10041202 10041222 -91831947 + (T)n Simple_repeat Simple_repeat 1 20 0 2489 55 0 3 chr13 10041800 10042093 -91831076 + AluY SINE Alu 10 301 -10 914 127 35 14 chr13 10044111 10044253 -91828916 - AluSg/x SINE Alu -32 280 136 755 141 39 0 chr13 10045769 10045897 -91827272 + L1P3 LINE L1 5343 5475 -679 926 236 94 9 chr13 10045963 10046196 -91826973 - MIR SINE MIR 0 262 10 594 206 90 13 chr13 10046442 10046597 -91826572 - L2 LINE L2 -5 3308 3142 * 849 255 90 15 chr13 10046590 10046857 -91826312 - L2 LINE L2 -353 2961 2675 352 172 111 153 chr13 10047496 10047667 -91825502 + L1MC/D LINE L1 5327 5490 -849 2419 92 0 0 chr13 10047667 10047973 -91825196 + AluSg SINE Alu 2 307 -3 959 87 13 40 chr13 10048434 10048583 -91824586 + MSTB1 LTR MaLR 286 430 -2 523 240 37 157 chr13 10048618 10048940 -91824229 - MER21B LTR ERV1 -409 196 24 3108 173 55 11 chr13 10049535 10050282 -91822887 - L1MA4 LINE L1 -15 6290 5488 213 243 54 27 chr13 10050617 10050630 -91822539 - MIR SINE MIR -66 196 185 2238 100 0 3 chr13 10050630 10050920 -91822249 - AluSx SINE Alu -19 293 5 213 243 54 27 chr13 10050920 10050980 -91822189 - MIR SINE MIR -77 185 121 2168 96 14 7 chr13 10051410 10051726 -91821443 - AluSx SINE Alu 0 318 1 198 0 0 0 chr13 10051743 10051765 -91821404 + (CA)n Simple_repeat Simple_repeat 2 23 0 222 91 0 0 chr13 10051824 10051857 -91821312 + (CA)n Simple_repeat Simple_repeat 2 34 0 351 0 0 0 chr13 10051901 10051940 -91821229 + (CA)n Simple_repeat Simple_repeat 2 40 0 278 105 0 0 chr13 10051980 10052018 -91821151 - Alu SINE Alu -264 38 1 282 73 0 0 chr13 10052036 10052077 -91821092 + (CA)n Simple_repeat Simple_repeat 1 41 0 183 80 0 0 chr13 10052133 10052158 -91821011 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 5130 150 36 6 chr13 10055399 10056251 -91816918 - L1MC2 LINE L1 -11 6333 5456 367 156 143 0 chr13 10056295 10056372 -91816797 - L1MC2 LINE L1 -871 5462 5375 442 314 58 5 chr13 10057907 10058095 -91815074 - MIR SINE MIR -58 204 7 29 60 0 0 chr13 10060195 10060245 -91812924 + AT_rich Low_complexity Low_complexity 1 50 0 1494 230 156 8 chr13 10060601 10061122 -91812047 - Charlie7 DNA MER1_type -257 2355 1758 421 281 62 14 chr13 10061201 10061347 -91811822 + MER112 DNA MER1_type 91 243 -17 716 270 21 5 chr13 10062329 10062518 -91810651 + MIR SINE MIR 32 223 -39 417 199 92 75 chr13 10062541 10062745 -91810424 - MER63 DNA MER1_type 0 1688 3 199 340 0 0 chr13 10063836 10063889 -91809280 - L2 LINE L2 -86 3227 3175 216 0 0 0 chr13 10064212 10064236 -91808933 + (A)n Simple_repeat Simple_repeat 1 24 0 1930 118 33 0 chr13 10064463 10064775 -91808394 - AluSx SINE Alu 0 321 1 653 267 76 57 chr13 10066044 10066359 -91806810 - MLT1I LTR MaLR -18 391 71 2307 119 0 0 chr13 10066653 10066965 -91806204 - AluSx SINE Alu 0 312 1 206 204 114 0 chr13 10066985 10067029 -91806140 - MIR SINE MIR -79 129 81 263 206 32 16 chr13 10067380 10067443 -91805726 - MER5B DNA MER1_type -1 177 114 2139 102 0 20 chr13 10067443 10067737 -91805432 + AluY SINE Alu 1 288 -23 2563 44 0 3 chr13 10067738 10068035 -91805134 + AluY SINE Alu 1 296 -15 188 306 35 35 chr13 10068100 10068185 -91804984 - MER5B DNA MER1_type -93 85 1 831 317 149 10 chr13 10068951 10069361 -91803808 + L3 LINE CR1 443 909 -668 401 252 19 19 chr13 10069704 10069807 -91803362 + L2 LINE L2 3211 3313 0 180 0 0 0 chr13 10070602 10070622 -91802547 + (CA)n Simple_repeat Simple_repeat 1 20 0 957 306 43 31 chr13 10071788 10072170 -91800999 + L1MDa LINE L1 17 406 -6134 2558 111 11 32 chr13 10072170 10072541 -91800628 + THE1B LTR MaLR 2 364 0 957 306 43 31 chr13 10072541 10072579 -91800590 + L1MDa LINE L1 406 442 -6098 2977 213 68 11 chr13 10073002 10073752 -91799417 + L1MDa LINE L1 1607 2399 -4141 1177 201 5 0 chr13 10073754 10073953 -91799216 + Tigger3(Golem) DNA MER2_type 2 201 -2828 * 3504 126 37 66 chr13 10073946 10074642 -91798527 + Tigger3(Golem) DNA MER2_type 2354 3029 0 1050 200 72 7 chr13 10074642 10075039 -91798130 + L1MDa LINE L1 2398 2828 -3712 2191 104 3 0 chr13 10076123 10076421 -91796748 - AluY SINE Alu -12 299 1 895 264 17 17 chr13 10076920 10077159 -91796010 + MIR SINE MIR 1 239 -23 296 356 39 86 chr13 10078838 10079245 -91793924 - L2 LINE L2 -4 3268 2881 22 0 0 0 chr13 10080903 10080925 -91792244 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr13 10082073 10082101 -91791068 + (CA)n Simple_repeat Simple_repeat 2 29 0 341 304 69 19 chr13 10082278 10082451 -91790718 - MIR SINE MIR -16 246 70 2308 107 3 19 chr13 10082549 10082866 -91790303 - AluSp SINE Alu -1 312 1 2758 133 95 52 chr13 10082866 10083283 -91789886 + LTR36 LTR ERV1 9 459 -152 2072 114 0 0 chr13 10083283 10083556 -91789613 - AluSx SINE Alu -39 273 1 2758 133 95 52 chr13 10083556 10083716 -91789453 + LTR36 LTR ERV1 459 611 0 263 245 31 41 chr13 10085562 10085660 -91787509 + MIR SINE MIR 9 105 -157 225 325 81 30 chr13 10086728 10086925 -91786244 - L2 LINE L2 -180 3092 2886 1969 228 64 10 chr13 10087054 10087725 -91785444 - L1M4 LINE L1 -2518 4126 3420 349 239 0 0 chr13 10087729 10087800 -91785369 - MLT2B2 LTR ERVL -65 450 380 3807 223 16 59 chr13 10087800 10088817 -91784352 - L1M4 LINE L1 -5536 1006 34 271 253 80 53 chr13 10088869 10089019 -91784150 - L2 LINE L2 -597 2717 2564 297 287 119 28 chr13 10089097 10089240 -91783929 - MIR SINE MIR -104 158 3 1674 235 152 30 chr13 10089274 10089368 -91783801 - L2 LINE L2 -2 3311 3230 2284 125 3 0 chr13 10089368 10089679 -91783490 + AluSx SINE Alu 1 312 0 1674 235 152 30 chr13 10089679 10089832 -91783337 - L2 LINE L2 -83 3230 3097 2151 118 48 22 chr13 10089832 10090187 -91782982 - THE1B LTR MaLR 0 364 1 1674 235 152 30 chr13 10090187 10090952 -91782217 - L2 LINE L2 -216 3097 2187 448 271 77 7 chr13 10092228 10092383 -91780786 - MIR SINE MIR -15 247 82 275 264 57 28 chr13 10093034 10093140 -91780029 - Charlie7 DNA MER1_type -2503 109 1 254 289 88 35 chr13 10093476 10093590 -91779579 + L2 LINE L2 3143 3262 -10 246 171 0 0 chr13 10094085 10094126 -91779043 - L2 LINE L2 -17 3296 3256 219 257 0 68 chr13 10094152 10094226 -91778943 - MIR SINE MIR -158 104 36 2597 127 17 2 chr13 10094521 10094938 -91778231 + MSTB LTR MaLR 1 423 -3 2086 133 7 10 chr13 10095415 10095717 -91777452 - AluSx SINE Alu -9 303 3 2313 107 0 3 chr13 10096021 10096320 -91776849 - AluSx SINE Alu -14 298 1 187 171 98 0 chr13 10096334 10096375 -91776794 - MIR SINE MIR -97 165 121 1222 122 145 37 chr13 10096518 10096732 -91776437 + AluSx SINE Alu 64 300 -12 283 247 63 2 chr13 10096753 10096828 -91776341 - MIR SINE MIR -118 90 11 384 22 0 0 chr13 10097406 10097451 -91775718 + (TG)n Simple_repeat Simple_repeat 1 45 0 2394 90 0 0 chr13 10097590 10097880 -91775289 - AluSx SINE Alu -21 291 2 333 340 104 0 chr13 10098421 10098565 -91774604 + MIR3 SINE MIR 3 161 -47 1804 170 38 9 chr13 10099133 10099474 -91773695 + MLT1A1 LTR MaLR 3 353 -12 23 68 0 0 chr13 10101073 10101117 -91772052 + AT_rich Low_complexity Low_complexity 1 44 0 549 232 44 33 chr13 10102717 10102898 -91770271 + MIR SINE MIR 1 183 -79 318 287 67 22 chr13 10103017 10103285 -91769884 - L2 LINE L2 -631 2683 2404 252 174 0 0 chr13 10103293 10103339 -91769830 - MIR SINE MIR -105 103 58 2001 236 38 22 chr13 10105398 10105931 -91767238 + MLT1F LTR MaLR 2 542 0 769 278 0 54 chr13 10105961 10106202 -91766967 - MIR SINE MIR -21 241 14 279 327 64 30 chr13 10106625 10106827 -91766342 - L2 LINE L2 -6 3307 3099 374 225 113 0 chr13 10106901 10106981 -91766188 + MER81 DNA DNA 1 89 -25 900 189 11 42 chr13 10107052 10107242 -91765927 + MER20B DNA MER1_type 10 193 -26 362 259 0 0 chr13 10108400 10108485 -91764684 + L2 LINE L2 3228 3312 -1 549 309 27 18 chr13 10109313 10109533 -91763636 - MIR SINE MIR -29 233 12 1851 188 36 35 chr13 10109580 10110034 -91763135 - MLT1C LTR MaLR -7 619 1 756 199 12 12 chr13 10110640 10110801 -91762368 + MER5B DNA MER1_type 18 178 0 1585 158 3 99 chr13 10111079 10111401 -91761768 - AluJo SINE Alu -21 291 1 1116 249 89 3 chr13 10112114 10112588 -91760581 - MER20B DNA MER1_type -116 667 118 202 139 28 0 chr13 10112730 10112766 -91760403 + CT-rich Low_complexity Low_complexity 3 39 0 312 325 98 8 chr13 10113111 10113234 -91759935 - MER5A DNA MER1_type -1 188 55 1279 229 82 56 chr13 10113444 10113906 -91759263 + MLT1J LTR MaLR 30 503 -8 2017 156 0 10 chr13 10115332 10115634 -91757535 + AluJo SINE Alu 1 299 -13 419 282 8 8 chr13 10116205 10116322 -91756847 + MIR3 SINE MIR 91 207 -1 190 281 148 23 chr13 10116365 10116493 -91756676 - L2 LINE L2 -43 3229 3086 400 340 59 57 chr13 10116702 10116760 -91756409 - L2 LINE L2 -589 2725 2669 2722 51 0 0 chr13 10116760 10117071 -91756098 - AluY SINE Alu 0 311 1 400 340 59 57 chr13 10117071 10117619 -91755550 - L2 LINE L2 -645 2669 2115 613 184 0 0 chr13 10117619 10117744 -91755425 + L1MA4A LINE L1 6176 6300 -3 400 340 59 57 chr13 10117744 10117785 -91755384 - L2 LINE L2 -1199 2115 2076 3871 56 15 0 chr13 10118037 10118556 -91754613 - L1PA8 LINE L1 0 6172 5646 2704 64 0 0 chr13 10118557 10118978 -91754191 + L1P3 LINE L1 5186 5606 -566 396 221 88 0 chr13 10119328 10119441 -91753728 - L1MC4 LINE L1 -2 8040 7918 1085 287 89 11 chr13 10119484 10119762 -91753407 - L1MC4 LINE L1 -468 7340 7085 1778 81 0 0 chr13 10119762 10119973 -91753196 - AluSg/x SINE Alu -14 296 86 1085 287 89 11 chr13 10119973 10120314 -91752855 - L1MC4 LINE L1 -723 7085 6634 429 269 0 0 chr13 10120357 10120465 -91752704 - MIR SINE MIR -36 226 119 266 276 157 10 chr13 10120591 10120735 -91752434 - MIR SINE MIR -61 147 16 512 306 6 28 chr13 10121108 10121288 -91751881 + MIR SINE MIR 16 191 -71 23 33 0 0 chr13 10121479 10121509 -91751660 + AT_rich Low_complexity Low_complexity 1 30 0 201 345 12 0 chr13 10121567 10121651 -91751518 + G-rich Low_complexity Low_complexity 6 90 0 405 278 114 18 chr13 10121700 10121927 -91751242 + L2 LINE L2 2286 2534 -780 276 261 94 43 chr13 10122306 10122444 -91750725 + L2 LINE L2 2586 2730 -584 180 278 250 11 chr13 10122653 10122829 -91750340 + L2 LINE L2 3084 3301 -12 480 292 101 14 chr13 10123062 10123281 -91749888 + MIR SINE MIR 15 252 -10 1272 139 46 0 chr13 10125140 10125377 -91747792 + L1MA8 LINE L1 6043 6290 -1 2379 70 0 42 chr13 10125788 10126100 -91747069 - AluSx SINE Alu -13 299 1 417 318 68 6 chr13 10126427 10126603 -91746566 + MIR SINE MIR 4 190 -72 2118 95 3 7 chr13 10126607 10126926 -91746243 - AluSx SINE Alu 0 318 1 261 245 31 31 chr13 10127252 10127350 -91745819 - Charlie7 DNA MER1_type -2 2610 2513 2068 114 28 14 chr13 10127351 10127640 -91745529 + AluSx SINE Alu 1 293 -19 2368 92 0 0 chr13 10128486 10128779 -91744390 + AluSx SINE Alu 1 293 -19 210 71 0 0 chr13 10129231 10129259 -91743910 + (A)n Simple_repeat Simple_repeat 1 28 0 400 287 53 45 chr13 10129325 10129569 -91743600 - L2 LINE L2 -202 3070 2825 567 274 52 38 chr13 10130223 10130435 -91742734 + MIR SINE MIR 48 262 0 344 301 41 8 chr13 10131381 10131504 -91741665 + MIR3 SINE MIR 78 204 -4 341 22 22 0 chr13 10132016 10132062 -91741107 + (CA)n Simple_repeat Simple_repeat 2 48 0 200 152 0 0 chr13 10132189 10132222 -91740947 - L2 LINE L2 -19 3294 3262 613 278 46 0 chr13 10132307 10132480 -91740689 + MIR SINE MIR 74 254 -8 219 301 94 0 chr13 10132490 10132643 -91740526 - MIR SINE MIR -62 200 33 244 258 152 26 chr13 10132871 10133022 -91740147 - MIR3 SINE MIR -22 186 17 245 310 187 23 chr13 10134057 10134405 -91738764 - L2 LINE L2 -652 2662 2258 395 235 191 0 chr13 10134833 10134969 -91738200 + L1MC4 LINE L1 6459 6620 -1422 349 222 0 0 chr13 10134970 10135051 -91738118 - MLT1B LTR MaLR 0 390 310 1251 251 25 0 chr13 10135107 10135462 -91737707 + L1MC4 LINE L1 7268 7631 -411 398 238 20 46 chr13 10135544 10135695 -91737474 + L1MC4 LINE L1 7756 7902 -140 480 273 0 15 chr13 10135774 10135906 -91737263 - MIR3 SINE MIR -38 170 41 183 302 0 0 chr13 10136008 10136051 -91737118 - MIR SINE MIR -123 139 97 197 377 121 14 chr13 10136096 10136319 -91736850 - L3 LINE CR1 -1076 501 255 646 298 73 21 chr13 10136791 10137223 -91735946 - L1MC/D LINE L1 -519 5645 5257 723 265 69 52 chr13 10138144 10138435 -91734734 - L3 LINE CR1 -3 1574 1279 231 250 0 0 chr13 10138435 10138483 -91734686 - L3 LINE CR1 -459 1118 1071 799 164 53 107 chr13 10138524 10138594 -91734575 - MLT1D LTR MaLR 0 505 433 1997 115 0 0 chr13 10138594 10138918 -91734251 + AluY SINE Alu 3 326 0 799 164 53 107 chr13 10138918 10139070 -91734099 - MLT1D LTR MaLR -72 433 293 1004 304 193 8 chr13 10139177 10139224 -91733945 - L2 LINE L2 -727 2587 2550 845 189 77 97 chr13 10139224 10139574 -91733595 + MER2 DNA MER2_type 2 344 0 1004 304 193 8 chr13 10139574 10140111 -91733058 - L2 LINE L2 -764 2550 1895 417 304 18 28 chr13 10140634 10140851 -91732318 + MLT1J LTR MaLR 297 511 0 227 293 37 0 chr13 10140938 10141020 -91732149 + MLT1J LTR MaLR 119 203 -308 454 186 42 145 chr13 10141210 10141403 -91731766 + MLT1L LTR MaLR 443 615 0 258 310 134 14 chr13 10141904 10142046 -91731123 + MER5B DNA MER1_type 8 166 -12 333 239 0 0 chr13 10142065 10142077 -91731092 + MER3 DNA MER1_type 37 48 -161 252 196 22 87 chr13 10142077 10142169 -91731000 - MER3 DNA MER1_type -1 208 123 * 1492 145 110 3 chr13 10142160 10142505 -91730664 + MER3 DNA MER1_type 2242 2623 0 242 208 42 0 chr13 10143008 10143056 -91730113 - MER2 DNA MER2_type -25 320 271 827 169 22 34 chr13 10143116 10143294 -91729875 - MER2 DNA MER2_type -169 176 1 33 73 0 0 chr13 10143925 10143993 -91729176 + AT_rich Low_complexity Low_complexity 1 68 0 183 290 69 99 chr13 10144055 10144186 -91728983 - L2 LINE L2 -6 3266 3140 25 31 0 0 chr13 10145704 10145736 -91727433 + AT_rich Low_complexity Low_complexity 1 32 0 1945 170 13 0 chr13 10145985 10146291 -91726878 + AluJo SINE Alu 1 310 -2 821 177 74 37 chr13 10148427 10148698 -91724471 + L1MC5 LINE L1 7633 7913 -48 2331 95 3 7 chr13 10149677 10149983 -91723186 - AluSx SINE Alu -7 305 1 812 231 113 5 chr13 10150439 10150642 -91722527 + MIR SINE MIR 26 250 -12 753 197 0 0 chr13 10152081 10152208 -91720961 - FRAM SINE Alu -49 127 1 187 51 0 51 chr13 10152422 10152461 -91720708 + (CA)n Simple_repeat Simple_repeat 2 38 0 2287 73 10 3 chr13 10152646 10152949 -91720220 - AluSp SINE Alu -8 305 1 39332 60 8 3 chr13 10153223 10159345 -91713824 - L1PA5 LINE L1 -4 6150 1 25 31 0 0 chr13 10159350 10159382 -91713787 + AT_rich Low_complexity Low_complexity 1 32 0 450 243 169 52 chr13 10159550 10160615 -91712554 - L1ME LINE L1 -3617 2463 1249 270 0 0 0 chr13 10160698 10160728 -91712441 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1698 138 0 0 chr13 10160741 10160980 -91712189 - AluSx SINE Alu -57 255 17 501 241 161 54 chr13 10161053 10161480 -91711689 - L1ME LINE L1 -4946 1134 488 339 303 90 90 chr13 10161783 10162205 -91710964 - L1ME LINE L1 -5612 458 37 330 26 0 0 chr13 10162261 10162300 -91710869 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 686 321 194 28 chr13 10162379 10162852 -91710317 + L2 LINE L2 2401 2952 -362 2241 92 0 64 chr13 10162862 10163190 -91709979 - AluSc SINE Alu -2 307 1 370 305 188 13 chr13 10163302 10163458 -91709711 + L2 LINE L2 3033 3160 -153 858 36 0 0 chr13 10163458 10163568 -91709601 + (TA)n Simple_repeat Simple_repeat 2 111 0 370 305 188 13 chr13 10163568 10163650 -91709519 + L2 LINE L2 3160 3313 0 394 266 68 79 chr13 10163654 10163831 -91709338 - MIR SINE MIR -19 243 69 21 100 0 0 chr13 10163978 10164048 -91709121 + AT_rich Low_complexity Low_complexity 1 70 0 24 32 0 0 chr13 10164245 10164276 -91708893 + AT_rich Low_complexity Low_complexity 1 31 0 2157 80 21 10 chr13 10164443 10164731 -91708438 - AluSg SINE Alu -12 298 8 355 322 34 20 chr13 10164736 10164885 -91708284 - L2 LINE L2 0 3313 3163 1653 108 24 12 chr13 10165026 10165276 -91707893 - AluSg SINE Alu -50 260 8 1239 287 19 16 chr13 10165282 10165648 -91707521 - L2 LINE L2 0 3313 2947 1591 61 0 0 chr13 10166662 10166859 -91706310 + AluY SINE Alu 106 302 -9 275 323 134 65 chr13 10166906 10167092 -91706077 + L2 LINE L2 3058 3256 -16 578 231 67 31 chr13 10167108 10167303 -91705866 + MER3 DNA MER1_type 7 208 -1 2523 60 7 0 chr13 10167578 10167880 -91705289 - AluSp SINE Alu -8 305 2 229 282 0 26 chr13 10169668 10169746 -91703423 + CT-rich Low_complexity Low_complexity 3 78 0 2463 75 10 0 chr13 10170071 10170378 -91702791 - AluSp SINE Alu -2 311 2 26 30 0 0 chr13 10171808 10171841 -91701328 + AT_rich Low_complexity Low_complexity 1 33 0 40653 48 5 3 chr13 10171846 10177988 -91695181 + L1PA3 LINE L1 1 6155 0 6724 56 24 0 chr13 10178004 10179660 -91693509 + L1PA7 LINE L1 4480 6154 0 228 170 198 28 chr13 10180027 10180133 -91693036 + MARNA DNA Mariner 21 144 -442 332 289 134 36 chr13 10180245 10180498 -91692671 + MARNA DNA Mariner 210 487 -99 245 303 18 9 chr13 10180879 10180988 -91692181 + L1ME LINE L1 5560 5669 -452 5692 249 58 42 chr13 10181244 10183547 -91689622 + L1PA12 LINE L1 856 3196 -4388 900 174 47 0 chr13 10183691 10183863 -91689306 + MER20 DNA MER1_type 40 219 0 23 0 0 0 chr13 10185043 10185066 -91688103 + AT_rich Low_complexity Low_complexity 1 23 0 280 313 113 5 chr13 10185092 10185287 -91687882 - MIR SINE MIR -44 218 3 387 281 10 25 chr13 10186248 10186366 -91686803 - MIR SINE MIR -78 130 32 288 291 46 40 chr13 10187069 10187220 -91685949 - MER117 DNA MER1_type -39 158 7 1988 156 3 3 chr13 10187421 10187728 -91685441 - AluSx SINE Alu -5 307 1 231 245 0 82 chr13 10188142 10188240 -91684929 + MER5B DNA MER1_type 59 148 -30 259 290 43 0 chr13 10188764 10188857 -91684312 - L1ME4a LINE L1 -26 6095 5999 * 2606 218 42 55 chr13 10188851 10189712 -91683457 - L1P LINE L1 -2684 3462 2613 209 250 13 26 chr13 10189856 10189932 -91683237 - L2 LINE L2 -30 3283 3209 1855 148 3 10 chr13 10191063 10191373 -91681796 - L1MB7 LINE L1 -1 6183 5876 574 176 20 0 chr13 10191413 10191515 -91681654 + MER94 DNA DNA 2 105 -29 5322 137 33 16 chr13 10193277 10194165 -91679004 - MER4D LTR ERV1 0 903 1 2230 97 7 3 chr13 10194554 10194844 -91678325 + AluSx SINE Alu 1 291 -21 199 319 153 0 chr13 10194867 10194939 -91678230 - MER5A DNA MER1_type -70 119 37 316 241 277 0 chr13 10195718 10195855 -91677314 + MER5A DNA MER1_type 15 189 0 455 238 85 14 chr13 10197551 10197692 -91675477 + MIR SINE MIR 43 192 -62 28 50 0 17 chr13 10199609 10199630 -91673539 + AT_rich Low_complexity Low_complexity 1 21 -38 2083 113 0 10 chr13 10199630 10199922 -91673247 + AluSp SINE Alu 1 289 -24 28 50 0 17 chr13 10199922 10199960 -91673209 + AT_rich Low_complexity Low_complexity 21 59 0 797 171 0 0 chr13 10200676 10200816 -91672353 - L1MB7 LINE L1 -19 6165 6026 1967 192 109 6 chr13 10201170 10201638 -91671531 - L1MD1 LINE L1 -9 6233 5718 401 323 15 0 chr13 10203130 10203263 -91669906 + MIR SINE MIR 13 147 -115 1336 225 208 47 chr13 10205252 10205711 -91667458 + MLT1L LTR MaLR 1 557 -58 1014 167 84 47 chr13 10205711 10205926 -91667243 + MER58A DNA MER1_type 1 223 -1 1336 225 208 47 chr13 10205926 10205994 -91667175 + MLT1L LTR MaLR 557 613 -2 991 246 156 31 chr13 10206114 10206617 -91666552 - MLT1G1 LTR MaLR -23 544 5 2155 105 3 45 chr13 10206620 10206934 -91666235 + AluSx SINE Alu 3 303 -9 229 282 26 26 chr13 10207194 10207272 -91665897 - MLT1G1-int LTR MaLR -262 1109 1032 2813 101 30 9 chr13 10207722 10208159 -91665010 - L1PB2 LINE L1 -1 6150 5705 272 218 46 46 chr13 10208571 10208658 -91664511 - MLT1G1-int LTR MaLR -1648 87 1 273 167 73 177 chr13 10208658 10208695 -91664474 - MLT1G1 LTR MaLR 0 542 503 2090 141 0 10 chr13 10208695 10208994 -91664175 + AluSx SINE Alu 1 296 -16 273 167 73 177 chr13 10208994 10209148 -91664021 - MLT1G1 LTR MaLR -39 503 371 274 332 25 39 chr13 10209685 10209968 -91663201 + L2 LINE L2 1955 2233 -1081 1512 264 126 7 chr13 10209975 10210426 -91662743 - MLT1J LTR MaLR -6 505 1 416 270 220 5 chr13 10210426 10210626 -91662543 + L2 LINE L2 2230 2472 -842 305 154 152 74 chr13 10210909 10211032 -91662137 + MLT1I LTR MaLR 275 549 0 336 335 32 27 chr13 10211033 10211254 -91661915 + L2 LINE L2 2477 2698 -616 374 227 34 0 chr13 10213268 10213356 -91659813 - L2 LINE L2 0 3313 3223 340 286 88 78 chr13 10214572 10215005 -91658164 + L2 LINE L2 1754 2190 -1124 982 312 116 24 chr13 10215009 10215931 -91657238 + L2 LINE L2 2299 3307 -6 2283 119 3 0 chr13 10216108 10216419 -91656750 - AluSx SINE Alu 0 312 1 33 43 0 0 chr13 10216950 10216997 -91656172 + AT_rich Low_complexity Low_complexity 1 47 0 1778 176 0 10 chr13 10217166 10217467 -91655702 - AluJb SINE Alu -14 298 1 388 325 25 6 chr13 10217861 10218018 -91655151 - MIR SINE MIR -74 188 29 311 267 23 0 chr13 10218436 10218522 -91654647 + (CTA)n Simple_repeat Simple_repeat 2 89 0 2586 46 0 0 chr13 10218733 10219035 -91654134 - AluY SINE Alu -9 302 1 2126 103 0 30 chr13 10219768 10220102 -91653067 + AluSx SINE Alu 1 325 0 1602 156 65 91 chr13 10220770 10221017 -91652152 - MLT1B LTR MaLR -16 374 139 2362 102 0 3 chr13 10221017 10221322 -91651847 + AluSc SINE Alu 1 304 -5 1602 156 65 91 chr13 10221322 10221458 -91651711 - MLT1B LTR MaLR -251 139 1 2469 153 32 26 chr13 10221765 10221950 -91651219 + MLT1C LTR MaLR 1 183 -284 2510 39 0 86 chr13 10221950 10222288 -91650881 + AluY SINE Alu 2 310 -1 2469 153 32 26 chr13 10222288 10222566 -91650603 + MLT1C LTR MaLR 183 467 0 2058 129 0 0 chr13 10222593 10222871 -91650298 + AluSx SINE Alu 7 284 -28 387 0 0 0 chr13 10223964 10224007 -91649162 + (TG)n Simple_repeat Simple_repeat 2 44 0 1469 181 67 0 chr13 10224215 10224469 -91648700 + AluJo SINE Alu 25 295 -17 2296 81 0 40 chr13 10224491 10224814 -91648355 + AluY SINE Alu 1 310 -1 2203 112 13 3 chr13 10224827 10225130 -91648039 + AluSq SINE Alu 1 306 -7 219 357 105 12 chr13 10225922 10226093 -91647076 - MIR3 SINE MIR -7 201 15 2413 97 3 0 chr13 10226476 10226784 -91646385 - AluSq SINE Alu -4 309 1 228 366 71 0 chr13 10227487 10227599 -91645570 + L2 LINE L2 3151 3270 -2 1960 244 130 64 chr13 10228189 10228673 -91644496 + HAL1b LINE L1 78 529 -819 1699 129 4 0 chr13 10228673 10228914 -91644255 + AluSg/x SINE Alu 70 311 -1 1960 244 130 64 chr13 10228914 10229099 -91644070 + HAL1b LINE L1 529 700 -648 2393 94 0 0 chr13 10229099 10229396 -91643773 - AluSq SINE Alu -15 298 2 1960 244 130 64 chr13 10229396 10229819 -91643350 + HAL1b LINE L1 700 1257 -91 882 118 0 22 chr13 10229819 10229955 -91643214 + FLAM_C SINE Alu 1 133 0 1960 244 130 64 chr13 10229955 10230042 -91643127 + HAL1b LINE L1 1257 1337 -11 2141 161 32 128 chr13 10230435 10230485 -91642684 - L1MB3 LINE L1 0 6183 6130 2042 133 3 7 chr13 10230485 10230778 -91642391 - AluJo SINE Alu -20 292 1 2141 161 32 128 chr13 10230778 10231318 -91641851 - L1MB3 LINE L1 -53 6130 5646 241 340 106 28 chr13 10231418 10231559 -91641610 + L2 LINE L2 3099 3250 -22 1428 155 98 43 chr13 10231648 10231925 -91641244 + AluJb SINE Alu 1 292 -20 1253 241 132 24 chr13 10232078 10232547 -91640622 - MLT2B1 LTR ERVL 0 520 1 1670 96 187 109 chr13 10232622 10232997 -91640172 - MER4A LTR ERV1 0 664 261 566 165 21 10 chr13 10232997 10233094 -91640075 - MER4A LTR ERV1 -566 98 1 2328 112 0 6 chr13 10233251 10233564 -91639605 + AluSx SINE Alu 1 311 -1 690 306 161 34 chr13 10234055 10234621 -91638548 - L3 LINE CR1 -17 1560 923 495 242 72 95 chr13 10234785 10235310 -91637859 + L1MEc LINE L1 1732 2268 -3947 234 191 21 0 chr13 10235310 10235323 -91637846 + Alu SINE Alu 121 134 -166 2030 128 24 0 chr13 10235323 10235613 -91637556 + AluSx SINE Alu 2 298 -14 495 242 72 95 chr13 10235357 10235794 -91637375 + L1MEc LINE L1 2268 2406 -3809 2643 177 75 44 chr13 10235794 10236499 -91636670 - LTR8A LTR ERV1 0 727 1 495 242 72 95 chr13 10236499 10236549 -91636620 + L1MEc LINE L1 2406 2456 -3759 2385 190 6 46 chr13 10236549 10237027 -91636142 + MER66B LTR ERV1 28 486 0 1357 236 62 40 chr13 10237048 10237070 -91636099 + L1MEc LINE L1 2470 2490 -3725 2439 79 3 0 chr13 10237070 10237373 -91635796 + AluSp SINE Alu 1 304 -9 1357 236 62 40 chr13 10237373 10237799 -91635370 + L1MEc LINE L1 2490 2928 -3287 2255 48 0 48 chr13 10237801 10238094 -91635075 + AluY SINE Alu 3 281 -30 563 252 103 70 chr13 10238135 10238580 -91634589 + L1MC4 LINE L1 7576 8035 -7 279 237 0 0 chr13 10238751 10238810 -91634359 + L2 LINE L2 3197 3255 -17 1836 262 50 45 chr13 10238860 10238900 -91634269 - L1ME3 LINE L1 -20 6142 6104 1948 139 139 13 chr13 10238900 10239239 -91633930 + MSTA LTR MaLR 1 394 -34 2371 99 0 0 chr13 10239239 10239541 -91633628 - AluSx SINE Alu -10 302 1 1948 139 139 13 chr13 10239541 10239581 -91633588 + MSTA LTR MaLR 394 428 0 1836 262 50 45 chr13 10239581 10240253 -91632916 - L1ME3 LINE L1 -58 6104 5426 470 244 144 35 chr13 10240255 10240574 -91632595 + L1ME4a LINE L1 5767 6120 -1 216 139 28 7 chr13 10240643 10240733 -91632436 + MIR SINE MIR 108 250 -12 673 239 56 36 chr13 10240765 10241016 -91632153 - L2 LINE L2 -2920 394 139 343 186 34 127 chr13 10241282 10241400 -91631769 - MER5B DNA MER1_type -68 110 4 664 272 90 34 chr13 10241834 10241886 -91631283 - MLT1L LTR MaLR -90 525 477 5707 96 24 32 chr13 10241886 10242803 -91630366 + L1PA13 LINE L1 4572 5471 -692 1582 164 44 0 chr13 10242803 10243078 -91630091 + AluJb SINE Alu 1 287 -25 5707 96 24 32 chr13 10243078 10243764 -91629405 + L1PA13 LINE L1 5471 6161 -2 664 272 90 34 chr13 10243764 10244034 -91629135 - MLT1L LTR MaLR -138 477 185 22 0 0 0 chr13 10244961 10244983 -91628186 + AT_rich Low_complexity Low_complexity 1 22 0 276 275 133 8 chr13 10244987 10245107 -91628062 - MIR SINE MIR -87 175 41 327 127 0 0 chr13 10248803 10248866 -91624303 + (GA)n Simple_repeat Simple_repeat 2 64 0 237 306 47 0 chr13 10249362 10249447 -91623722 - MIR3 SINE MIR -3 205 117 183 100 0 0 chr13 10249965 10249995 -91623174 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 217 12 6 chr13 10250037 10250203 -91622966 + (CA)n Simple_repeat Simple_repeat 2 168 0 252 111 0 0 chr13 10250229 10250274 -91622895 + (CA)n Simple_repeat Simple_repeat 1 45 0 396 0 0 0 chr13 10251454 10251498 -91621671 + (TA)n Simple_repeat Simple_repeat 2 45 0 1961 123 0 17 chr13 10251498 10251800 -91621369 - MER46B DNA MER2_type -63 173 2 2232 108 3 19 chr13 10252422 10252738 -91620431 + AluSq SINE Alu 1 311 -2 234 0 71 24 chr13 10252775 10252817 -91620352 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 246 271 62 33 chr13 10253033 10253195 -91619974 - LTR16A1 LTR ERVL 0 457 327 1839 232 39 43 chr13 10253711 10254198 -91618971 + MLT1J LTR MaLR 9 493 -18 1691 177 17 10 chr13 10254198 10254497 -91618672 - AluJb SINE Alu -11 301 1 66 73 0 0 chr13 10255953 10256089 -91617080 + AT_rich Low_complexity Low_complexity 1 136 0 376 139 60 18 chr13 10256117 10256345 -91616824 + (TA)n Simple_repeat Simple_repeat 1 237 0 615 258 51 32 chr13 10260369 10260586 -91612583 + MIR SINE MIR 29 249 -13 234 267 182 79 chr13 10260901 10261066 -91612103 - MER5A DNA MER1_type -1 188 7 586 296 61 53 chr13 10261358 10261622 -91611547 - L3 LINE CR1 -99 1478 1213 410 254 104 8 chr13 10262463 10262597 -91610572 + L2 LINE L2 3167 3313 0 1033 246 31 31 chr13 10262837 10263093 -91610076 - MIR SINE MIR 0 262 7 25 51 0 0 chr13 10265438 10265477 -91607692 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 10266751 10266772 -91606397 + AT_rich Low_complexity Low_complexity 1 21 0 2089 126 0 3 chr13 10267054 10267347 -91605822 - AluSx SINE Alu -20 292 1 1976 168 0 0 chr13 10267683 10267993 -91605176 - AluJo SINE Alu -2 310 1 2434 92 0 0 chr13 10268021 10268327 -91604842 + AluSc SINE Alu 1 306 -3 21 36 0 0 chr13 10269108 10269136 -91604033 + AT_rich Low_complexity Low_complexity 1 28 0 2147 117 0 3 chr13 10269203 10269493 -91603676 - AluSx SINE Alu -23 289 1 28 0 0 0 chr13 10269837 10269865 -91603304 + AT_rich Low_complexity Low_complexity 1 28 0 445 253 19 37 chr13 10271091 10271253 -91601916 + L1MC4 LINE L1 5743 5901 -1907 424 230 158 25 chr13 10271281 10271456 -91601713 + MLT1B LTR MaLR 1 177 -188 319 237 0 13 chr13 10271549 10271572 -91601597 + L1MC4 LINE L1 6624 6646 -1396 2587 50 0 0 chr13 10271572 10271870 -91601299 + AluY SINE Alu 3 300 -11 319 237 0 13 chr13 10271870 10271922 -91601247 + L1MC4 LINE L1 6646 6698 -1344 1087 126 6 6 chr13 10272102 10272282 -91600887 + AluSq SINE Alu 126 305 0 300 212 235 15 chr13 10272360 10272492 -91600677 + L1ME4a LINE L1 5950 6110 -11 797 134 42 14 chr13 10272642 10272784 -91600385 + L1MC1 LINE L1 6177 6322 -11 1672 159 3 59 chr13 10272785 10273106 -91600063 + AluJo SINE Alu 1 303 -9 183 139 0 0 chr13 10273340 10273376 -91599793 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr13 10273576 10273600 -91599569 + AT_rich Low_complexity Low_complexity 1 24 0 243 242 0 48 chr13 10274006 10274068 -91599101 + L2 LINE L2 3249 3307 -6 22 0 0 0 chr13 10275050 10275072 -91598097 + AT_rich Low_complexity Low_complexity 1 22 0 1723 168 152 39 chr13 10275675 10275907 -91597262 + L1MD2 LINE L1 5855 6059 -300 216 97 0 0 chr13 10275907 10275938 -91597231 + (CA)n Simple_repeat Simple_repeat 2 32 0 1723 168 152 39 chr13 10275938 10275998 -91597171 + L1MD2 LINE L1 6059 6111 -248 2204 107 0 3 chr13 10275998 10276289 -91596880 - AluSx SINE Alu -22 290 1 1723 168 152 39 chr13 10276289 10276429 -91596740 + L1MD2 LINE L1 6111 6337 -22 22 35 0 0 chr13 10276582 10276611 -91596558 + AT_rich Low_complexity Low_complexity 1 29 0 357 287 116 31 chr13 10277254 10277480 -91595689 + L2 LINE L2 2755 3002 -270 965 162 9 46 chr13 10279885 10279920 -91593249 + L1MB3 LINE L1 5975 6010 -173 411 21 0 0 chr13 10279920 10279968 -91593201 + (TG)n Simple_repeat Simple_repeat 2 49 0 2118 114 4 0 chr13 10279970 10280250 -91592919 - AluSp SINE Alu -31 282 2 965 162 9 46 chr13 10280250 10280427 -91592742 + L1MB3 LINE L1 6011 6182 -1 265 335 93 14 chr13 10281365 10281580 -91591589 + L2 LINE L2 1792 2023 -1291 338 270 36 9 chr13 10281650 10281761 -91591408 - MER103 DNA DNA -9 157 44 452 267 124 0 chr13 10282363 10282524 -91590645 - MIR SINE MIR -4 258 78 505 218 57 8 chr13 10282753 10282877 -91590292 - MER94 DNA DNA -4 130 1 180 0 0 0 chr13 10283463 10283483 -91589686 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 30 0 0 chr13 10283776 10283809 -91589360 + AT_rich Low_complexity Low_complexity 1 33 0 2034 146 3 7 chr13 10284896 10285197 -91587972 - AluSx SINE Alu -12 300 1 195 42 0 0 chr13 10285403 10285427 -91587742 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 10286410 10286439 -91586730 + AT_rich Low_complexity Low_complexity 1 29 0 243 243 0 39 chr13 10286508 10286611 -91586558 + (TAA)n Simple_repeat Simple_repeat 1 99 0 261 237 51 0 chr13 10286631 10286690 -91586479 - MIR SINE MIR -34 228 167 1265 202 0 45 chr13 10286697 10286984 -91586185 + AluJo SINE Alu 9 282 -30 32 57 0 0 chr13 10287284 10287337 -91585832 + AT_rich Low_complexity Low_complexity 1 53 0 1499 211 0 7 chr13 10288588 10288873 -91584296 + AluJo SINE Alu 3 285 -27 21 36 0 0 chr13 10288873 10288901 -91584268 + AT_rich Low_complexity Low_complexity 1 28 0 351 132 0 0 chr13 10288905 10288958 -91584211 + MSTC LTR MaLR 372 424 -4 358 204 4 101 chr13 10288963 10289089 -91584080 - L1MC4 LINE L1 -1339 6983 1995 306 0 0 0 chr13 10289090 10289124 -91584045 + (TG)n Simple_repeat Simple_repeat 2 35 0 291 79 0 0 chr13 10289125 10289163 -91584006 - Alu SINE Alu -13 289 252 843 179 0 0 chr13 10289286 10289431 -91583738 + FRAM SINE Alu 1 142 -34 405 0 0 0 chr13 10289431 10289476 -91583693 + (TAA)n Simple_repeat Simple_repeat 3 47 0 211 268 138 89 chr13 10289486 10289579 -91583590 - MIR SINE MIR -15 247 145 2378 138 35 40 chr13 10289579 10290005 -91583164 - MSTC LTR MaLR -4 424 1 211 268 138 89 chr13 10290005 10290034 -91583135 - MIR SINE MIR -117 145 119 1654 151 39 10 chr13 10290554 10290865 -91582304 + L1MB3 LINE L1 5847 6166 -17 2135 109 7 0 chr13 10290876 10291179 -91581990 - AluSg SINE Alu -5 305 1 25 51 0 0 chr13 10291269 10291308 -91581861 + AT_rich Low_complexity Low_complexity 1 39 0 429 295 101 26 chr13 10291331 10291677 -91581492 - L1ME4a LINE L1 -135 5986 5615 531 231 0 0 chr13 10291715 10291849 -91581320 + (TG)n Simple_repeat Simple_repeat 1 134 0 492 301 98 6 chr13 10292682 10292865 -91580304 - L2 LINE L2 -5 3308 3109 319 269 60 118 chr13 10293179 10293543 -91579626 - L2 LINE L2 -1460 1854 1512 1457 235 86 45 chr13 10293546 10294141 -91579028 - L1MC5 LINE L1 -36 7925 7307 195 42 0 0 chr13 10294156 10294180 -91578989 + (GTTTG)n Simple_repeat Simple_repeat 5 28 0 1736 182 132 35 chr13 10294412 10294836 -91578333 + MLT1C LTR MaLR 1 465 -2 1390 266 89 67 chr13 10294839 10295744 -91577425 - L1MC5 LINE L1 -808 7153 6193 1927 120 0 52 chr13 10295744 10296068 -91577101 + AluSx SINE Alu 1 307 -5 1390 266 89 67 chr13 10296068 10296874 -91576295 - L1MC5 LINE L1 -1768 6193 5406 338 250 17 83 chr13 10296956 10297076 -91576093 + L2 LINE L2 3139 3250 -22 240 111 0 0 chr13 10297090 10297126 -91576043 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 743 310 78 23 chr13 10297865 10298505 -91574664 + L1ME3 LINE L1 5143 5826 -336 3195 215 14 9 chr13 10298514 10299164 -91574005 + MER82 DNA MER2_type 1 653 0 753 301 156 42 chr13 10299815 10300410 -91572759 - L3 LINE CR1 -517 1060 398 627 293 149 14 chr13 10301394 10301606 -91571563 - MLT1K LTR MaLR -114 474 292 744 124 62 98 chr13 10301606 10301800 -91571369 + MER53 DNA DNA 3 189 0 627 293 149 14 chr13 10301800 10302004 -91571165 - MLT1K LTR MaLR -296 292 2 208 361 14 0 chr13 10302131 10302203 -91570966 + L2 LINE L2 3151 3223 -49 246 376 15 15 chr13 10302446 10302579 -91570590 - MIR SINE MIR -80 182 50 245 326 133 0 chr13 10302971 10303069 -91570100 + MER91B DNA MER1_type 44 154 -36 279 230 46 35 chr13 10303121 10303208 -91569961 - MIR SINE MIR -111 97 10 2169 241 54 2 chr13 10303983 10304465 -91568704 + MLT2B3 LTR ERVL 2 508 -46 292 143 0 179 chr13 10304479 10304563 -91568606 + Tigger2 DNA MER2_type 1 69 -2649 * 2873 135 23 5 chr13 10304553 10304989 -91568180 + Tigger2 DNA MER2_type 2273 2716 -2 1926 163 60 3 chr13 10305033 10305402 -91567767 - MLT1B LTR MaLR 0 390 1 405 312 35 35 chr13 10306359 10306529 -91566640 + MIR3 SINE MIR 3 172 -36 1890 129 0 0 chr13 10306956 10307302 -91565867 - AluSx SINE Alu 0 347 2 216 0 0 0 chr13 10308178 10308202 -91564967 + (TC)n Simple_repeat Simple_repeat 2 25 0 261 0 0 0 chr13 10308202 10308231 -91564938 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr13 10308534 10308569 -91564600 + AT_rich Low_complexity Low_complexity 1 35 0 1719 211 98 7 chr13 10310568 10310985 -91562184 + MER31A LTR ERV1 1 455 -30 2057 91 14 3 chr13 10311653 10311939 -91561230 + AluSx SINE Alu 1 289 -23 931 149 0 11 chr13 10311939 10312114 -91561055 + (GGAA)n Simple_repeat Simple_repeat 1 173 0 194 213 0 53 chr13 10312114 10312208 -91560961 + GA-rich Low_complexity Low_complexity 4 92 0 401 304 44 38 chr13 10312691 10312849 -91560320 - MIR SINE MIR -15 247 89 198 200 44 0 chr13 10312847 10312892 -91560277 + MIR SINE MIR 50 96 -166 * 941 94 0 0 chr13 10313489 10313616 -91559553 - L1PA8 LINE L1 0 6172 6046 224 306 51 31 chr13 10314005 10314103 -91559066 + MIR SINE MIR 2 101 -161 728 259 58 8 chr13 10314305 10314564 -91558605 - LTR33 LTR ERVL -235 286 15 3093 162 11 22 chr13 10314610 10314965 -91558204 + MER34B LTR ERV1 1 349 -216 2010 92 50 3 chr13 10314965 10315247 -91557922 + AluSg SINE Alu 1 295 -15 3093 162 11 22 chr13 10315247 10315433 -91557736 + MER34B LTR ERV1 349 536 -29 267 348 208 13 chr13 10315737 10316050 -91557119 - L2 LINE L2 -373 2941 2568 523 251 6 55 chr13 10316051 10316214 -91556955 - L2 LINE L2 0 3313 3159 245 258 65 0 chr13 10316774 10316836 -91556333 - L2 LINE L2 -5 3308 3243 2004 117 0 0 chr13 10317259 10317571 -91555598 + AluSx SINE Alu 1 312 0 2682 96 30 6 chr13 10318461 10318827 -91554342 - THE1C LTR MaLR 0 375 1 2527 17 3 0 chr13 10318833 10319123 -91554046 + L1PA2 LINE L1 5861 6151 -4 191 59 0 29 chr13 10319134 10319168 -91554001 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 748 246 36 15 chr13 10319697 10319892 -91553277 + MLT1A1 LTR MaLR 167 365 0 427 341 17 0 chr13 10320210 10320426 -91552743 + (TG)n Simple_repeat Simple_repeat 1 219 0 747 262 113 51 chr13 10321046 10321455 -91551714 + LTR33 LTR ERVL 35 468 -53 284 267 178 20 chr13 10321507 10321608 -91551561 + L2 LINE L2 3192 3308 -5 222 289 62 55 chr13 10322337 10322465 -91550704 + MIR3 SINE MIR 78 206 -2 1900 122 0 34 chr13 10323834 10324287 -91548882 + AluSq SINE Alu 1 443 0 206 346 47 19 chr13 10324289 10324396 -91548773 + L2 LINE L2 3159 3268 -4 601 134 126 0 chr13 10324984 10325111 -91548058 + MER53 DNA DNA 27 169 -20 195 42 0 0 chr13 10325627 10325651 -91547518 + (TG)n Simple_repeat Simple_repeat 1 24 0 573 289 45 20 chr13 10327711 10327912 -91545257 + MIR SINE MIR 9 214 -48 493 264 131 35 chr13 10328433 10328806 -91544363 + L2 LINE L2 2737 3154 -159 2159 102 10 0 chr13 10329308 10329603 -91543566 + AluSx SINE Alu 1 298 -14 3254 162 108 22 chr13 10329893 10330559 -91542610 + LTR8A LTR ERV1 1 723 -4 275 263 11 32 chr13 10330591 10330686 -91542483 + L2 LINE L2 3160 3252 -61 584 241 67 97 chr13 10331040 10331339 -91541830 + MLT1F1 LTR MaLR 1 290 -252 1057 205 68 0 chr13 10331497 10331746 -91541423 + MLT1F1 LTR MaLR 302 567 0 224 273 273 9 chr13 10331772 10331882 -91541287 - MIR SINE MIR -118 144 6 572 253 54 18 chr13 10333943 10334109 -91539060 + MIR SINE MIR 77 248 -14 427 260 140 25 chr13 10334971 10335206 -91537963 - MIR SINE MIR 0 262 1 238 377 85 5 chr13 10336049 10336248 -91536921 - L2 LINE L2 -530 2784 2570 374 358 26 66 chr13 10336328 10336433 -91536736 - L2 LINE L2 0 3272 3164 2049 129 13 10 chr13 10336433 10336742 -91536427 + AluSx SINE Alu 1 310 -2 374 358 26 66 chr13 10336742 10337092 -91536077 - L2 LINE L2 -108 3164 2835 208 377 50 0 chr13 10337171 10337391 -91535778 - L2 LINE L2 -910 2404 2174 356 311 46 13 chr13 10337731 10337882 -91535287 - L2 LINE L2 -17 3255 3100 1885 194 42 33 chr13 10337973 10338431 -91534738 - MLT1C LTR MaLR 0 467 6 254 267 0 0 chr13 10338447 10338507 -91534662 + L2 LINE L2 3246 3305 -8 340 274 141 94 chr13 10338838 10338906 -91534263 + L1MC4a LINE L1 5549 5612 -2196 1638 141 4 16 chr13 10338906 10339155 -91534014 + AluSx SINE Alu 58 303 -9 340 274 141 94 chr13 10339155 10339320 -91533849 + L1MC4a LINE L1 5612 5793 -2015 490 270 104 64 chr13 10339322 10339667 -91533502 - MLT1J LTR MaLR -49 462 104 271 293 8 49 chr13 10339697 10339820 -91533349 + L1MC4a LINE L1 5799 5916 -1892 2206 161 57 92 chr13 10339827 10340460 -91532709 + LTR36 LTR ERV1 1 611 0 396 359 5 26 chr13 10340526 10340718 -91532451 + LTR36-int LTR ERV1 115 302 -1484 1455 137 36 44 chr13 10341267 10341574 -91531595 + LTR36-int LTR ERV1 883 1191 -5407 4087 128 16 12 chr13 10341574 10342216 -91530953 - LTR9B LTR ERV1 0 644 1 1455 137 36 44 chr13 10342216 10342279 -91530890 + LTR36-int LTR ERV1 1191 2479 -4119 265 216 0 0 chr13 10342279 10342330 -91530839 + LTR30 LTR ERV1 1 51 -671 1768 107 44 38 chr13 10342331 10342666 -91530503 + LTR12 LTR ERV1 57 2032 -406 307 286 9 0 chr13 10342667 10342772 -91530397 + LTR30 LTR ERV1 553 658 -64 543 108 0 0 chr13 10342772 10342846 -91530323 + LTR12 LTR ERV1 641 714 0 1844 151 32 26 chr13 10342854 10343136 -91530033 + LTR36-int LTR ERV1 1260 1539 -5137 2411 64 0 7 chr13 10343136 10343431 -91529738 + AluY SINE Alu 17 309 -2 1844 151 32 26 chr13 10343431 10343641 -91529528 + LTR36-int LTR ERV1 1539 3752 -2924 662 117 0 0 chr13 10343632 10343726 -91529443 + LTR36-int LTR ERV1 3975 4068 -2530 * 3350 177 33 20 chr13 10343714 10344354 -91528815 + LTR36-int LTR ERV1 1631 2278 -2602 12677 155 44 65 chr13 10344401 10347205 -91525964 + LTR36-int LTR ERV1 2758 5796 -514 881 179 81 58 chr13 10347251 10347474 -91525695 + LTR36-int LTR ERV1 5923 6150 -181 437 171 1 0 chr13 10347489 10347563 -91525606 + MER49 LTR ERV1 488 557 -165 356 301 75 86 chr13 10347637 10347986 -91525183 + LTR36-int LTR ERV1 6705 7049 -73 2068 151 121 97 chr13 10348026 10348623 -91524546 + LTR36 LTR ERV1 1 611 0 260 122 0 49 chr13 10348930 10348971 -91524198 + MER34C LTR ERV1 1 39 -546 245 260 0 39 chr13 10349489 10349566 -91523603 + MER34 LTR ERV1 67 140 -402 * 1102 208 156 57 chr13 10349539 10349962 -91523207 + MER39 LTR ERV1 220 684 -23 2290 108 0 0 chr13 10350031 10350326 -91522843 - AluSg SINE Alu -15 295 1 2002 148 7 19 chr13 10350938 10351248 -91521921 + AluSx SINE Alu 1 306 -6 794 206 104 128 chr13 10351569 10352060 -91521109 - MER39 LTR ERV1 -80 627 1 22 35 0 0 chr13 10352096 10352125 -91521044 + AT_rich Low_complexity Low_complexity 1 29 0 2113 120 0 13 chr13 10352290 10352590 -91520579 + AluSx SINE Alu 1 296 -16 234 261 0 54 chr13 10352637 10352729 -91520440 + L2 LINE L2 3083 3169 -144 630 143 0 0 chr13 10352749 10352854 -91520315 - L1MB4 LINE L1 -2 6178 6074 446 231 74 84 chr13 10353263 10353445 -91519724 + MER31-int LTR ERV1 1348 1530 -3341 2559 43 0 7 chr13 10353445 10353744 -91519425 - AluY SINE Alu -13 298 2 446 231 74 84 chr13 10353744 10353764 -91519405 + MER31-int LTR ERV1 1530 2493 -2378 512 198 32 0 chr13 10354092 10354218 -91518951 + MER31-int LTR ERV1 1724 1853 -6267 264 123 25 99 chr13 10354221 10354302 -91518867 + MER31-int LTR ERV1 3888 3962 -2636 4623 206 99 72 chr13 10354340 10356988 -91516181 + MER31-int LTR ERV1 2876 7144 -393 2595 158 23 44 chr13 10356988 10357508 -91515661 + LTR54 LTR ERV1 1 509 -1 2211 111 3 7 chr13 10357761 10358059 -91515110 + AluSx SINE Alu 1 297 -15 244 336 35 49 chr13 10358091 10358317 -91514852 + L1MC/D LINE L1 5564 5786 -2022 605 222 122 11 chr13 10358320 10358500 -91514669 - MER63A DNA MER1_type 0 210 11 3973 99 106 2 chr13 10358941 10359524 -91513645 - LTR9B LTR ERV1 0 644 1 306 237 132 91 chr13 10360794 10361013 -91512156 + MIR SINE MIR 14 241 -21 2620 56 0 0 chr13 10361463 10361766 -91511403 + AluY SINE Alu 1 303 -8 21 0 0 0 chr13 10361806 10361827 -91511342 + AT_rich Low_complexity Low_complexity 1 21 0 459 243 34 20 chr13 10361855 10362003 -91511166 - MIR SINE MIR -1 261 112 262 259 28 54 chr13 10362296 10362508 -91510661 + L1MC/D LINE L1 5334 5544 -698 297 302 66 0 chr13 10362863 10362969 -91510200 - MIR3 SINE MIR -44 164 52 806 217 16 5 chr13 10363168 10363352 -91509817 + MER5A DNA MER1_type 1 186 -3 504 215 158 13 chr13 10363362 10363520 -91509649 - MER5A DNA MER1_type 0 189 9 344 193 244 8 chr13 10363606 10363725 -91509444 + MER5A DNA MER1_type 9 155 -34 2002 191 59 65 chr13 10364255 10364357 -91508812 - MLT1D LTR MaLR 0 505 404 2044 82 104 0 chr13 10364357 10364626 -91508543 + AluSx SINE Alu 1 297 -15 2002 191 59 65 chr13 10364626 10365031 -91508138 - MLT1D LTR MaLR -101 404 1 346 318 129 9 chr13 10366077 10366294 -91506875 - MIR SINE MIR -1 261 19 298 300 181 6 chr13 10367487 10367647 -91505522 + MIR SINE MIR 54 241 -21 325 157 0 0 chr13 10367978 10368029 -91505140 - LTR67 LTR ERVL 0 557 507 747 202 202 22 chr13 10368104 10368332 -91504837 - MLT1J1 LTR MaLR -175 271 3 262 295 13 0 chr13 10368395 10368473 -91504696 - LTR67 LTR ERVL -476 81 3 337 183 28 28 chr13 10368519 10368590 -91504579 - MLT1F LTR MaLR -131 411 341 440 214 51 17 chr13 10368767 10368884 -91504285 - L2 LINE L2 0 3313 3193 2161 111 7 33 chr13 10368931 10369237 -91503932 - AluSx SINE Alu -14 298 1 835 124 23 0 chr13 10370555 10370684 -91502485 + L1MB3 LINE L1 5982 6113 -70 2195 115 0 3 chr13 10371028 10371323 -91501846 + AluSx SINE Alu 1 294 -18 1759 169 48 67 chr13 10371476 10371818 -91501351 + MER31-int LTR ERV1 2654 2988 -3343 2269 137 6 3 chr13 10371818 10372154 -91501015 + MER1B DNA MER1_type 1 337 0 1759 169 48 67 chr13 10372154 10372230 -91500939 + MER31-int LTR ERV1 2988 3064 -3267 282 188 101 0 chr13 10372231 10372300 -91500869 + MER31-int LTR ERV1 1339 1414 -3522 * 482 260 84 36 chr13 10372241 10372491 -91500678 + LTR57-int LTR ERVL 1249 1510 -3833 1006 228 45 66 chr13 10372555 10373327 -91499842 + MER31-int LTR ERV1 1736 4352 -528 676 168 41 46 chr13 10373463 10373659 -91499510 + MER31-int LTR ERV1 3536 3730 -2868 2037 138 0 14 chr13 10373675 10373972 -91499197 - AluSx SINE Alu -19 293 1 1333 209 95 75 chr13 10374200 10374808 -91498361 + MER31-int LTR ERV1 2481 3075 -3523 1660 190 3 3 chr13 10374808 10375097 -91498072 + AluJo SINE Alu 1 289 -23 1333 209 95 75 chr13 10375097 10375245 -91497924 + MER31-int LTR ERV1 3075 3219 -3379 2276 75 4 0 chr13 10375245 10375554 -91497615 - AluY SINE Alu 0 310 1 1333 209 95 75 chr13 10375554 10376102 -91497067 + MER31-int LTR ERV1 3219 3755 -2843 2813 109 28 14 chr13 10376102 10376524 -91496645 - MSTA LTR MaLR 0 428 1 1333 209 95 75 chr13 10376524 10376551 -91496618 + MER31-int LTR ERV1 3755 3780 -2818 2181 89 17 0 chr13 10376551 10376843 -91496326 + AluY SINE Alu 1 297 -14 1333 209 95 75 chr13 10376843 10376879 -91496290 + MER31-int LTR ERV1 3780 5592 -1006 574 207 27 27 chr13 10376993 10377063 -91496106 + MER31-int LTR ERV1 4256 4325 -611 1572 123 9 13 chr13 10377063 10377291 -91495878 - AluSg/x SINE Alu -10 302 76 574 207 27 27 chr13 10377291 10377370 -91495799 + MER31-int LTR ERV1 4324 4405 -531 2188 116 17 0 chr13 10377468 10377793 -91495376 + AluSx SINE Alu 1 312 0 2881 118 18 51 chr13 10379128 10379618 -91493551 + MER101 LTR ERV1 1 474 0 1467 183 166 46 chr13 10380249 10380660 -91492509 + MLT1C LTR MaLR 8 467 0 276 293 28 19 chr13 10381053 10381120 -91492049 + MIR SINE MIR 86 156 -106 1300 218 29 55 chr13 10381120 10381500 -91491669 + MLT1A2 LTR MaLR 1 370 -4 276 293 28 19 chr13 10381500 10381538 -91491631 + MIR SINE MIR 156 192 -70 259 297 54 0 chr13 10382277 10382388 -91490781 + MLT1L LTR MaLR 468 584 -31 1872 153 49 52 chr13 10382663 10382808 -91490361 - MLT1A1 LTR MaLR 0 365 221 2964 80 3 0 chr13 10382808 10383182 -91489987 + THE1C LTR MaLR 1 375 0 1872 153 49 52 chr13 10383182 10383402 -91489767 - MLT1A1 LTR MaLR -144 221 1 2352 102 0 13 chr13 10383457 10383772 -91489397 - AluSx SINE Alu -1 311 1 4192 188 55 18 chr13 10383845 10384676 -91488493 - MER21B LTR ERV1 -1 862 1 189 361 34 17 chr13 10384892 10385011 -91488158 + MIR SINE MIR 24 144 -64 203 310 54 93 chr13 10385147 10385197 -91487972 + MIR SINE MIR 50 100 -162 2071 120 20 7 chr13 10385197 10385497 -91487672 - AluSq SINE Alu -9 304 1 203 310 54 93 chr13 10385497 10385575 -91487594 + MIR SINE MIR 100 173 -89 307 266 43 29 chr13 10386385 10386524 -91486645 + MLT1I LTR MaLR 80 220 -189 2724 35 0 3 chr13 10387077 10387389 -91485780 - AluY SINE Alu 0 311 1 2229 177 44 18 chr13 10387645 10388098 -91485071 - MLT1C LTR MaLR -2 465 1 348 314 9 9 chr13 10388575 10388680 -91484489 - L2 LINE L2 -7 3265 3161 456 215 0 0 chr13 10388855 10388934 -91484235 + L2 LINE L2 3221 3299 -14 1560 98 0 0 chr13 10388938 10389152 -91484017 + AluSg/x SINE Alu 89 302 -8 2224 64 0 4 chr13 10389797 10390121 -91483048 + AluY SINE Alu 1 323 0 876 294 39 56 chr13 10390151 10390637 -91482532 + L2 LINE L2 2429 2906 -408 602 298 0 42 chr13 10390750 10390918 -91482251 + L2 LINE L2 3110 3270 -2 492 307 34 65 chr13 10391249 10391601 -91481568 - MLT1K LTR MaLR -2 586 246 688 286 105 21 chr13 10391975 10392300 -91480869 - L1MC4a LINE L1 -1888 5920 5569 263 288 0 12 chr13 10392388 10392468 -91480701 + MER5A DNA MER1_type 111 189 0 447 327 32 8 chr13 10392527 10392778 -91480391 - L1MC4a LINE L1 -2298 5510 5254 268 146 182 0 chr13 10392939 10392994 -91480175 + MER5B DNA MER1_type 114 178 0 207 326 126 0 chr13 10392994 10393081 -91480088 - L2 LINE L2 -52 3220 3122 189 242 162 40 chr13 10393634 10393733 -91479436 + L2 LINE L2 3162 3272 0 202 213 21 43 chr13 10393809 10393856 -91479313 + MIR SINE MIR 215 260 -2 1622 184 0 0 chr13 10395637 10395914 -91477255 + AluJo SINE Alu 1 277 -35 272 281 163 13 chr13 10398730 10398883 -91474286 - MIR SINE MIR -78 184 9 256 140 43 183 chr13 10399086 10399132 -91474037 - MIR SINE MIR -74 188 159 1530 197 0 3 chr13 10399132 10399312 -91473857 - AluJb SINE Alu 0 310 130 207 0 0 0 chr13 10399312 10399335 -91473834 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1530 197 0 3 chr13 10399335 10399465 -91473704 - AluJb SINE Alu -180 130 1 256 140 43 183 chr13 10399465 10399510 -91473659 - MIR SINE MIR -103 159 109 731 236 194 37 chr13 10399592 10399995 -91473174 - LTR33 LTR ERVL -54 467 2 180 0 0 0 chr13 10400746 10400766 -91472403 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1585 163 99 23 chr13 10401337 10401681 -91471488 + MLT1B LTR MaLR 21 390 0 302 302 138 2 chr13 10401923 10402114 -91471055 + MIR SINE MIR 21 242 -20 182 103 0 26 chr13 10402576 10402615 -91470554 + (CGG)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr13 10403417 10403446 -91469723 + AT_rich Low_complexity Low_complexity 1 29 0 2067 163 41 0 chr13 10403533 10403871 -91469298 - MLT1A1 LTR MaLR -13 352 1 1091 171 28 0 chr13 10404910 10405091 -91468078 + MER5A DNA MER1_type 2 187 -2 393 282 72 147 chr13 10405314 10405490 -91467679 + L3 LINE CR1 570 757 -820 1859 147 43 40 chr13 10405490 10405864 -91467305 - THE1C LTR MaLR 0 375 1 393 282 72 147 chr13 10405864 10406190 -91466979 + L3 LINE CR1 757 1024 -553 1332 186 87 115 chr13 10406190 10406637 -91466532 + MLT1D LTR MaLR 1 435 -70 1915 115 0 0 chr13 10406637 10406960 -91466209 - AluY SINE Alu 0 325 3 1332 186 87 115 chr13 10406960 10407030 -91466139 + MLT1D LTR MaLR 435 505 0 393 282 72 147 chr13 10407030 10407119 -91466050 + L3 LINE CR1 1024 1118 -459 758 265 69 52 chr13 10407119 10407410 -91465759 + L3 LINE CR1 1279 1574 -3 791 311 66 16 chr13 10408331 10408763 -91464406 + L1MC/D LINE L1 5257 5705 -503 217 372 121 14 chr13 10409235 10409458 -91463711 + L3 LINE CR1 255 501 -1076 188 302 0 0 chr13 10409503 10409546 -91463623 + MIR SINE MIR 97 139 -123 491 238 82 14 chr13 10409648 10409795 -91463374 + MIR3 SINE MIR 41 197 -11 1378 256 41 5 chr13 10409859 10410447 -91462722 - L1MC4 LINE L1 -93 7715 7188 379 222 0 0 chr13 10410503 10410584 -91462585 + MLT1B LTR MaLR 310 390 0 447 235 191 0 chr13 10410585 10410721 -91462448 - L1MC4 LINE L1 -1422 6620 6459 304 310 187 23 chr13 10411149 10411497 -91461672 + L2 LINE L2 2258 2662 -652 182 320 97 26 chr13 10411805 10412033 -91461136 + L2 LINE L2 2658 2901 -413 234 271 152 26 chr13 10412532 10412683 -91460486 + MIR3 SINE MIR 17 186 -22 273 307 119 0 chr13 10412911 10413097 -91460072 + MIR SINE MIR 33 245 -17 * 675 272 46 0 chr13 10413074 10413247 -91459922 - MIR SINE MIR -8 254 74 194 236 73 36 chr13 10413310 10413332 -91459837 + MIR SINE MIR 193 249 -13 200 182 0 0 chr13 10413332 10413365 -91459804 + L2 LINE L2 3262 3294 -19 323 23 23 0 chr13 10413492 10413536 -91459633 + (TG)n Simple_repeat Simple_repeat 2 46 0 370 301 41 8 chr13 10414049 10414172 -91458997 - MIR3 SINE MIR -4 204 78 609 274 53 36 chr13 10415118 10415343 -91457826 - MIR SINE MIR 0 262 32 448 287 53 45 chr13 10415984 10416228 -91456941 + L2 LINE L2 2825 3070 -202 210 71 0 0 chr13 10416294 10416322 -91456847 + (T)n Simple_repeat Simple_repeat 1 28 0 2211 92 0 0 chr13 10416774 10417067 -91456102 - AluSx SINE Alu -19 293 1 1916 114 28 14 chr13 10417913 10418202 -91454967 - AluSx SINE Alu -19 293 1 271 245 31 31 chr13 10418203 10418301 -91454868 + Charlie7 DNA MER1_type 2513 2610 -2 1969 95 3 7 chr13 10418627 10418946 -91454223 + AluSx SINE Alu 1 318 0 437 318 68 6 chr13 10418950 10419126 -91454043 - MIR SINE MIR -72 190 4 2252 67 0 41 chr13 10419453 10419767 -91453402 + AluSx SINE Alu 1 301 -11 1317 143 46 0 chr13 10420179 10420416 -91452753 - L1MA8 LINE L1 -1 6290 6043 520 292 101 14 chr13 10422275 10422494 -91450675 - MIR SINE MIR -10 252 15 208 278 250 11 chr13 10422727 10422903 -91450266 - L2 LINE L2 -12 3301 3084 265 275 124 34 chr13 10423087 10423265 -91449904 - L2 LINE L2 -554 2760 2567 428 278 114 18 chr13 10423629 10423856 -91449313 - L2 LINE L2 -780 2534 2286 201 345 12 0 chr13 10423905 10423989 -91449180 + C-rich Low_complexity Low_complexity 6 90 0 23 33 0 0 chr13 10424047 10424077 -91449092 + AT_rich Low_complexity Low_complexity 1 30 0 537 306 6 28 chr13 10424268 10424448 -91448721 - MIR SINE MIR -71 191 16 396 259 118 55 chr13 10424961 10425436 -91447733 + L1ME LINE L1 1930 2434 -3962 319 266 90 27 chr13 10425459 10425681 -91447488 + L1ME LINE L1 2494 2729 -3486 937 235 195 71 chr13 10425698 10425971 -91447198 + L1ME LINE L1 2803 3041 -3174 606 188 0 58 chr13 10425971 10426109 -91447060 + FLAM_A SINE Alu 1 130 -3 2369 69 0 0 chr13 10426111 10426415 -91446754 + AluY SINE Alu 1 304 -7 937 235 195 71 chr13 10426415 10427126 -91446043 + L1ME LINE L1 3041 3913 -2302 369 278 112 12 chr13 10427164 10427333 -91445836 + L1ME LINE L1 5679 5864 -326 426 73 0 0 chr13 10427390 10427445 -91445724 - MER57A LTR ERV1 -348 55 1 225 0 0 0 chr13 10427726 10427751 -91445418 + (TC)n Simple_repeat Simple_repeat 2 26 0 303 266 89 24 chr13 10428031 10428155 -91445014 + MER117 DNA MER1_type 11 142 -55 231 315 0 0 chr13 10428204 10428281 -91444888 + MIR SINE MIR 45 121 -87 532 267 132 39 chr13 10428287 10428596 -91444573 + MER90 LTR ERV1 1 280 -334 2199 88 0 52 chr13 10428596 10428924 -91444245 - AluSx SINE Alu -1 311 1 532 267 132 39 chr13 10428924 10429048 -91444121 + MER90 LTR ERV1 280 612 -2 306 303 115 8 chr13 10429049 10429171 -91443998 + MIR SINE MIR 122 256 -6 888 225 118 51 chr13 10429700 10430474 -91442695 - Charlie7 DNA MER1_type -119 2493 1570 393 250 97 34 chr13 10430600 10430776 -91442393 - Charlie7 DNA MER1_type -2360 252 66 21 71 0 0 chr13 10432632 10432674 -91440495 + AT_rich Low_complexity Low_complexity 1 42 0 2202 78 0 42 chr13 10434627 10434935 -91438234 + AluSq SINE Alu 1 295 -18 208 83 42 42 chr13 10434935 10434983 -91438186 + (TTAAA)n Simple_repeat Simple_repeat 1 48 0 250 250 25 12 chr13 10436789 10436869 -91436300 + C-rich Low_complexity Low_complexity 3 83 0 195 42 0 0 chr13 10437044 10437068 -91436101 + (CGG)n Simple_repeat Simple_repeat 2 25 0 180 125 159 182 chr13 10438094 10438182 -91434987 + MIR SINE MIR 127 212 -50 227 151 302 0 chr13 10438224 10438277 -91434892 - L2 LINE L2 0 3272 3204 216 262 0 0 chr13 10438245 10438287 -91434882 - L2 LINE L2 -37 3276 3235 * 192 231 0 39 chr13 10438375 10438427 -91434742 - L2 LINE L2 -73 3199 3150 467 189 315 0 chr13 10439338 10439449 -91433720 + MIR3 SINE MIR 35 180 -28 541 155 36 170 chr13 10439520 10439667 -91433502 + L1MB7 LINE L1 6008 6124 -60 2235 183 58 5 chr13 10439667 10440114 -91433055 - L1MB3 LINE L1 0 6183 5713 541 155 36 170 chr13 10440114 10440160 -91433009 + L1MB7 LINE L1 6124 6175 -9 2236 108 0 10 chr13 10440713 10441020 -91432149 + AluSq SINE Alu 2 305 -8 1573 77 5 0 chr13 10441342 10441550 -91431619 - L1MA7 LINE L1 -367 5933 5725 1421 173 24 60 chr13 10441551 10441886 -91431283 + L1MA7 LINE L1 5966 6288 -3 425 293 71 0 chr13 10441898 10442038 -91431131 + MER5B DNA MER1_type 29 178 0 292 276 47 47 chr13 10442566 10442736 -91430433 - L2 LINE L2 -451 2863 2694 291 289 0 12 chr13 10442811 10442894 -91430275 - MIR3 SINE MIR -3 205 124 189 0 0 0 chr13 10443138 10443159 -91430010 + (TG)n Simple_repeat Simple_repeat 2 22 0 2274 75 4 0 chr13 10444027 10444307 -91428862 - AluSp SINE Alu -12 301 21 245 323 52 10 chr13 10444829 10444925 -91428244 + L2 LINE L2 3134 3233 -39 240 248 29 105 chr13 10445351 10445456 -91427713 - MIR3 SINE MIR -3 205 109 2311 104 0 3 chr13 10445708 10446006 -91427163 - AluSx SINE Alu -15 297 1 472 202 0 11 chr13 10446048 10446142 -91427027 - FLAM_A SINE Alu -14 128 36 22 35 0 0 chr13 10446415 10446444 -91426725 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 10446854 10446882 -91426287 + AT_rich Low_complexity Low_complexity 1 28 0 281 267 0 0 chr13 10446924 10446984 -91426185 + MIR SINE MIR 47 106 -156 1705 147 12 0 chr13 10447020 10447272 -91425897 + AluJo SINE Alu 9 263 -49 252 0 0 0 chr13 10447294 10447322 -91425847 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 337 268 62 9 chr13 10447921 10448033 -91425136 + MER94 DNA DNA 1 118 -16 378 313 69 8 chr13 10448207 10448338 -91424831 + MER91C DNA MER1_type 1 139 -1 586 273 64 32 chr13 10448503 10448723 -91424446 + MIR SINE MIR 26 252 -10 239 246 33 0 chr13 10448881 10448942 -91424227 + CT-rich Low_complexity Low_complexity 2 64 0 1798 183 0 7 chr13 10449681 10449981 -91423188 + AluJo SINE Alu 1 298 -14 617 277 113 26 chr13 10450134 10450365 -91422804 - MIR SINE MIR -6 256 6 1262 115 9 71 chr13 10450577 10450662 -91422507 - 7SLRNA srpRNA srpRNA -107 213 124 2092 103 68 0 chr13 10450662 10450954 -91422215 - AluSx SINE Alu 0 312 1 1262 115 9 71 chr13 10450954 10451094 -91422075 - 7SLRNA srpRNA srpRNA -196 124 2 290 297 108 9 chr13 10451095 10451206 -91421963 + L2 LINE L2 2938 3059 -213 569 297 48 52 chr13 10451340 10451650 -91421519 - L2 LINE L2 -49 3264 2956 188 0 74 0 chr13 10453544 10453571 -91419598 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 215 274 189 11 chr13 10453708 10453803 -91419366 - MIR SINE MIR -66 196 85 1745 186 0 0 chr13 10454400 10454701 -91418468 + AluJb SINE Alu 1 301 -11 1237 175 0 27 chr13 10455747 10455993 -91417176 + AluJb SINE Alu 82 312 0 506 284 68 86 chr13 10456266 10456558 -91416611 - L2 LINE L2 -44 3269 2983 990 345 24 3 chr13 10456851 10457228 -91415941 - L2 LINE L2 -343 2971 2587 688 192 69 9 chr13 10457231 10457460 -91415709 + L1MA9 LINE L1 5946 6284 -28 9050 98 54 4 chr13 10457463 10458687 -91414482 + HSMAR1 DNA Mariner 3 1287 0 191 258 43 43 chr13 10458703 10458796 -91414373 - L2 LINE L2 -711 2603 2511 278 282 69 8 chr13 10460081 10460212 -91412957 - L1ME4a LINE L1 -207 5914 5776 2108 108 0 14 chr13 10460389 10460703 -91412466 + AluSx SINE Alu 1 310 0 1876 107 0 4 chr13 10463234 10463478 -91409691 + AluSp SINE Alu 1 243 -70 1098 270 101 64 chr13 10466028 10466386 -91406783 - MLT1J LTR MaLR -6 505 123 2320 110 0 0 chr13 10466386 10466685 -91406484 + AluSg SINE Alu 1 299 -11 1098 270 101 64 chr13 10466685 10466811 -91406358 - MLT1J LTR MaLR -388 123 3 507 274 126 9 chr13 10468074 10468419 -91404750 + MLT1J LTR MaLR 100 509 -2 1545 255 38 14 chr13 10468522 10468946 -91404223 + MER57B LTR ERV1 1 434 0 24 67 0 0 chr13 10469208 10469253 -91403916 + AT_rich Low_complexity Low_complexity 1 45 0 957 166 114 31 chr13 10469980 10470096 -91403073 + MER3 DNA MER1_type 1 106 -103 207 0 0 0 chr13 10470096 10470119 -91403050 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 957 166 114 31 chr13 10470119 10470130 -91403039 + MER3 DNA MER1_type 106 115 -94 2084 107 0 10 chr13 10470130 10470419 -91402750 - AluSx SINE Alu -26 286 1 957 166 114 31 chr13 10470419 10470483 -91402686 + MER3 DNA MER1_type 115 209 0 1578 159 39 26 chr13 10472209 10472517 -91400652 + AluJb SINE Alu 1 312 0 2618 172 32 10 chr13 10472531 10473046 -91400123 + MER41B LTR ERV1 90 474 -12 342 269 138 66 chr13 10473073 10473240 -91399929 + MER5A DNA MER1_type 9 187 -2 379 248 124 0 chr13 10473407 10473528 -91399641 + MIR SINE MIR 119 254 -8 232 356 40 0 chr13 10473553 10473654 -91399515 + MIR SINE MIR 83 187 -75 2069 148 7 0 chr13 10475977 10476310 -91396859 + AluJo SINE Alu 1 335 0 206 357 81 22 chr13 10476537 10476809 -91396360 + L2 LINE L2 2192 2479 -835 1749 189 0 3 chr13 10476920 10477241 -91395928 - AluJb SINE Alu 0 320 1 272 282 145 84 chr13 10477316 10477543 -91395626 + LTR67 LTR ERVL 2 242 -315 324 315 8 24 chr13 10477619 10477746 -91395423 + LTR67 LTR ERVL 419 543 -14 376 139 60 18 chr13 10479496 10479724 -91393445 + (TA)n Simple_repeat Simple_repeat 1 237 0 66 73 0 0 chr13 10479752 10479888 -91393281 + AT_rich Low_complexity Low_complexity 1 136 0 1633 148 3 99 chr13 10481344 10481688 -91391481 + AluJb SINE Alu 1 311 -1 639 220 25 0 chr13 10481721 10481839 -91391330 - FLAM_A SINE Alu -12 121 1 3736 186 72 48 chr13 10481882 10482417 -91390752 + MER21B LTR ERV1 5 569 -294 2049 118 7 17 chr13 10482417 10482706 -91390463 - AluSx SINE Alu -26 286 1 3736 186 72 48 chr13 10482706 10482998 -91390171 + MER21B LTR ERV1 569 852 -11 380 111 22 89 chr13 10483004 10483094 -91390075 - L1ME3 LINE L1 -24 6138 6055 245 91 0 0 chr13 10483095 10483128 -91390041 - MER3 DNA MER1_type -161 48 16 683 209 218 42 chr13 10483142 10483449 -91389720 - L1ME3 LINE L1 -156 6006 5646 2065 188 23 5 chr13 10483449 10483838 -91389331 - MER65C LTR ERV1 0 461 66 355 239 0 0 chr13 10483838 10483909 -91389260 - L1ME3 LINE L1 -528 5636 5566 748 179 28 31 chr13 10483915 10484139 -91389030 - MER3 DNA MER1_type -6 203 1 564 266 57 13 chr13 10484154 10484312 -91388857 - MER112 DNA MER1_type -73 187 23 652 85 11 43 chr13 10485490 10485584 -91387585 + AluY SINE Alu 205 295 -16 803 224 0 0 chr13 10485600 10485747 -91387422 - FAM SINE Alu -10 175 29 6652 168 10 37 chr13 10485849 10487668 -91385501 - L1MA8 LINE L1 0 6291 4534 526 264 39 11 chr13 10488058 10488240 -91384929 - MER117 DNA MER1_type -10 187 1 629 278 45 29 chr13 10488426 10488651 -91384518 + MIR SINE MIR 18 254 -8 1451 198 10 26 chr13 10489617 10489920 -91383249 - AluJo SINE Alu -10 302 5 29 0 0 0 chr13 10489939 10489968 -91383201 + AT_rich Low_complexity Low_complexity 1 29 0 747 165 8 8 chr13 10489969 10490090 -91383079 - FLAM_C SINE Alu -11 122 2 833 225 16 16 chr13 10490150 10490337 -91382832 - MER5A DNA MER1_type -2 187 1 254 153 0 111 chr13 10490355 10490427 -91382742 + HERVL66 LTR ERVL 2277 2340 -1989 234 246 136 9 chr13 10491061 10491171 -91381998 - L1ME4a LINE L1 -4 6117 5994 306 0 0 0 chr13 10491180 10491214 -91381955 + (TA)n Simple_repeat Simple_repeat 2 35 0 2241 83 7 3 chr13 10491214 10491516 -91381653 - AluSc SINE Alu -6 303 1 33 43 0 0 chr13 10491878 10491925 -91381244 + AT_rich Low_complexity Low_complexity 1 47 0 2340 105 0 0 chr13 10492639 10492952 -91380217 - AluSq SINE Alu 0 313 1 24 0 0 0 chr13 10492954 10492978 -91380191 + AT_rich Low_complexity Low_complexity 1 24 0 2066 143 46 108 chr13 10493212 10493710 -91379459 - MLT1C LTR MaLR 0 467 1 2235 129 6 0 chr13 10493731 10494063 -91379106 + MER47A DNA MER2_type 33 366 0 267 360 110 10 chr13 10496690 10496890 -91376279 - MIR SINE MIR -23 239 20 213 339 115 0 chr13 10498789 10498919 -91374250 - L2 LINE L2 0 3272 3128 694 204 138 108 chr13 10498919 10499188 -91373981 + L1ME1 LINE L1 5880 6144 -22 318 338 26 19 chr13 10499308 10499462 -91373707 - L2 LINE L2 -214 3058 2904 454 184 87 0 chr13 10499579 10499682 -91373487 - L1MB3 LINE L1 -7 6176 6065 1612 146 0 15 chr13 10499682 10499943 -91373226 - AluSc SINE Alu -11 298 42 498 118 0 0 chr13 10499943 10500011 -91373158 - AluS SINE Alu -240 73 6 1183 153 23 23 chr13 10500017 10500233 -91372936 - L1MB4 LINE L1 -106 6074 5859 656 219 219 5 chr13 10500942 10501090 -91372079 - MIR SINE MIR 0 262 147 1326 198 183 23 chr13 10501090 10501484 -91371685 - MSTB2 LTR MaLR 0 457 1 656 219 219 5 chr13 10501484 10501545 -91371624 - MIR SINE MIR -115 147 8 368 293 115 21 chr13 10501752 10501943 -91371226 - L2 LINE L2 -1 3312 3104 203 167 0 0 chr13 10502027 10502063 -91371106 + (TG)n Simple_repeat Simple_repeat 1 36 0 2096 172 46 0 chr13 10502167 10502534 -91370635 + MLT1B LTR MaLR 1 384 -6 334 157 0 0 chr13 10502706 10502757 -91370412 - L2 LINE L2 -1 3271 3221 1949 198 77 25 chr13 10503364 10503844 -91369325 + MLT1D LTR MaLR 1 505 0 472 243 81 7 chr13 10503958 10504094 -91369075 + L2 LINE L2 3168 3313 0 1920 151 0 0 chr13 10506039 10506331 -91366838 + AluJo SINE Alu 1 292 -20 425 300 53 24 chr13 10508106 10508276 -91364893 + MIR SINE MIR 67 241 -21 2120 102 0 0 chr13 10508316 10508610 -91364559 + AluY SINE Alu 1 294 -17 349 304 114 19 chr13 10508713 10508871 -91364298 - MER5B DNA MER1_type -5 173 1 293 319 177 0 chr13 10510105 10510246 -91362923 - MIR3 SINE MIR -25 183 18 327 127 0 0 chr13 10511480 10511543 -91361626 + (GA)n Simple_repeat Simple_repeat 2 64 0 255 282 51 0 chr13 10512039 10512117 -91361052 - MIR3 SINE MIR -3 205 124 183 100 0 0 chr13 10512642 10512672 -91360497 + (CA)n Simple_repeat Simple_repeat 2 31 0 369 217 12 6 chr13 10512714 10512880 -91360289 + (CA)n Simple_repeat Simple_repeat 2 168 0 252 111 0 0 chr13 10512906 10512951 -91360218 + (CA)n Simple_repeat Simple_repeat 1 45 0 396 0 0 0 chr13 10514131 10514175 -91358994 + (TA)n Simple_repeat Simple_repeat 2 45 0 1998 123 0 17 chr13 10514175 10514477 -91358692 - MER46B DNA MER2_type -63 173 2 2144 108 3 19 chr13 10515099 10515415 -91357754 + AluSq SINE Alu 1 311 -2 234 0 71 24 chr13 10515452 10515494 -91357675 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 266 271 62 33 chr13 10515710 10515872 -91357297 - LTR16A1 LTR ERVL 0 457 327 1926 222 35 65 chr13 10516388 10516875 -91356294 + MLT1J LTR MaLR 9 481 -30 1666 171 17 10 chr13 10516875 10517174 -91355995 - AluJb SINE Alu -11 301 1 1926 222 35 65 chr13 10517174 10517205 -91355964 + MLT1J LTR MaLR 481 511 0 2296 80 0 3 chr13 10517269 10517569 -91355600 + AluY SINE Alu 1 299 -12 246 342 33 17 chr13 10517629 10517642 -91355527 - MIR SINE MIR -1 261 250 14234 134 49 9 chr13 10517642 10519966 -91353203 - Tigger1 DNA MER2_type 0 2418 3 246 342 33 17 chr13 10519966 10520072 -91353097 - MIR SINE MIR -12 250 140 * 283 343 21 35 chr13 10520061 10520204 -91352965 + L2 LINE L2 2611 2751 -563 1106 277 65 30 chr13 10520210 10520756 -91352413 - MLT1F LTR MaLR -17 525 10 248 194 75 43 chr13 10523181 10523274 -91349895 - L1MC5 LINE L1 -92 7869 7774 1975 158 12 26 chr13 10523865 10524207 -91348962 + MER1B DNA MER1_type 1 337 0 1168 173 59 30 chr13 10525126 10525363 -91347806 - MIR SINE MIR -1 261 18 1954 125 0 0 chr13 10526809 10527088 -91346081 + AluSq SINE Alu 1 279 -34 396 0 0 0 chr13 10527088 10527132 -91346037 + (CA)n Simple_repeat Simple_repeat 2 45 0 257 321 37 68 chr13 10528373 10528563 -91344606 + L3 LINE CR1 1084 1267 -310 330 317 0 10 chr13 10530097 10530198 -91342971 + L1ME4a LINE L1 6022 6121 0 1884 146 3 0 chr13 10530845 10531139 -91342030 - AluJb SINE Alu -17 295 1 2448 74 0 0 chr13 10531315 10531627 -91341542 + AluSx SINE Alu 1 312 0 332 276 61 10 chr13 10532670 10532768 -91340401 + MIR3 SINE MIR 85 187 -21 216 272 25 37 chr13 10532882 10532963 -91340206 + L2 LINE L2 2970 3049 -223 253 275 55 11 chr13 10533128 10533219 -91339950 + LTR48B LTR ERV1 6 100 -544 * 1216 227 82 64 chr13 10533193 10533387 -91339782 + MER39 LTR ERV1 260 449 -258 1997 138 0 0 chr13 10533387 10533678 -91339491 + AluSx SINE Alu 11 301 -11 1216 227 82 64 chr13 10533678 10533923 -91339246 + MER39 LTR ERV1 449 707 0 307 262 136 78 chr13 10536084 10536275 -91336894 - L1M4c LINE L1 -5078 1306 1105 185 0 40 0 chr13 10537038 10537063 -91336106 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1568 161 10 24 chr13 10537070 10537361 -91335808 - AluJb SINE Alu -25 287 1 667 269 58 45 chr13 10537380 10537545 -91335624 - MIR SINE MIR -26 236 66 2262 116 106 30 chr13 10537545 10537587 -91335582 - MSTA LTR MaLR 0 428 391 2129 125 0 0 chr13 10537587 10537892 -91335277 + AluSg SINE Alu 1 305 -5 2262 116 106 30 chr13 10537892 10538247 -91334922 - MSTA LTR MaLR -37 391 1 667 269 58 45 chr13 10538247 10538304 -91334865 - MIR SINE MIR -196 66 11 183 339 15 0 chr13 10539664 10539729 -91333440 - L2 LINE L2 0 3313 3248 1843 123 3 53 chr13 10539750 10540051 -91333118 + AluSq SINE Alu 21 306 -7 746 305 72 84 chr13 10540223 10540958 -91332211 + L3 LINE CR1 831 1556 -21 205 389 44 9 chr13 10541553 10541666 -91331503 + L2 LINE L2 3141 3257 -15 294 318 36 0 chr13 10541870 10541980 -91331189 - L2 LINE L2 0 3272 3159 2230 96 0 10 chr13 10542103 10542395 -91330774 - AluSq SINE Alu -24 289 1 2356 116 0 3 chr13 10542581 10542892 -91330277 + AluSx SINE Alu 1 310 -2 229 282 0 26 chr13 10543217 10543295 -91329874 + GA-rich Low_complexity Low_complexity 3 78 0 5320 80 18 0 chr13 10546248 10546927 -91326242 - LTR8 LTR ERV1 0 691 1 2007 111 42 0 chr13 10548105 10548393 -91324776 + AluY SINE Alu 1 300 -11 286 221 232 0 chr13 10548514 10548609 -91324560 + MER5B DNA MER1_type 5 121 -57 756 180 61 142 chr13 10548636 10548947 -91324222 - L1MC4 LINE L1 -6 8036 7751 220 159 68 0 chr13 10548963 10549007 -91324162 - MER5B DNA MER1_type -125 53 7 2132 95 51 3 chr13 10549314 10549608 -91323561 + AluY SINE Alu 1 308 -3 1293 181 41 24 chr13 10549753 10550046 -91323123 + MER33 DNA MER1_type 27 324 0 2873 168 86 58 chr13 10550640 10551347 -91321822 + LTR8A LTR ERV1 1 727 0 1988 152 62 3 chr13 10553353 10553689 -91319480 + MLT2C1 LTR ERVL 1 356 -41 21 0 0 0 chr13 10553764 10553785 -91319384 + AT_rich Low_complexity Low_complexity 1 21 0 4371 253 44 18 chr13 10553798 10555259 -91317910 + L1M2 LINE L1 2794 4291 -2557 734 184 14 7 chr13 10555259 10555400 -91317769 - L1M4 LINE L1 -1893 4253 4112 4446 156 20 52 chr13 10556180 10556349 -91316820 - L1MC2 LINE L1 -1 6623 6450 1958 132 49 0 chr13 10556349 10556637 -91316532 + AluSc SINE Alu 1 302 -7 4446 156 20 52 chr13 10556637 10557363 -91315806 - L1MC2 LINE L1 -174 6450 5757 1515 156 16 0 chr13 10557374 10557630 -91315539 - L1MA7 LINE L1 0 6291 6032 1460 168 58 0 chr13 10557630 10557995 -91315174 - L1MC2 LINE L1 -747 5679 5379 907 215 62 8 chr13 10558018 10558260 -91314909 - L1MC2 LINE L1 -4109 2317 2063 2036 141 295 4 chr13 10558281 10558755 -91314414 - L1MC2 LINE L1 -4507 1919 1308 810 238 140 98 chr13 10558755 10559108 -91314061 + MER34B LTR ERV1 1 386 -179 3943 128 48 64 chr13 10559108 10559724 -91313445 + LTR8 LTR ERV1 1 606 -85 2654 37 0 0 chr13 10559724 10560022 -91313147 - AluY SINE Alu -13 298 1 3943 128 48 64 chr13 10560022 10560107 -91313062 + LTR8 LTR ERV1 606 691 0 810 238 140 98 chr13 10560107 10560295 -91312874 + MER34B LTR ERV1 386 565 0 336 251 132 12 chr13 10560303 10560470 -91312699 + MIR SINE MIR 48 234 -28 2161 120 0 3 chr13 10561234 10561525 -91311644 + AluY SINE Alu 1 290 -21 1409 209 34 33 chr13 10561578 10562145 -91311024 + L1ME1 LINE L1 5617 6178 0 452 286 45 82 chr13 10562238 10562347 -91310822 + L1ME LINE L1 5384 5496 -625 2441 101 0 0 chr13 10562347 10562654 -91310515 + AluSx SINE Alu 2 308 -4 452 286 45 82 chr13 10562654 10562971 -91310198 + L1ME LINE L1 5496 5794 -327 248 282 0 14 chr13 10563730 10563801 -91309368 + (TG)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chr13 10564090 10564112 -91309057 + AT_rich Low_complexity Low_complexity 1 22 0 2006 212 61 50 chr13 10564186 10564827 -91308342 + L1MB8 LINE L1 5531 6178 0 403 295 0 87 chr13 10564820 10565061 -91308108 + L1ME3 LINE L1 5732 5951 -211 * 288 0 0 0 chr13 10565081 10565113 -91308056 + (TA)n Simple_repeat Simple_repeat 2 33 0 31 0 0 0 chr13 10565283 10565314 -91307855 + AT_rich Low_complexity Low_complexity 1 31 0 503 261 137 0 chr13 10565317 10565478 -91307691 - MIR SINE MIR -26 236 54 2035 126 0 38 chr13 10565936 10566253 -91306916 - AluSx SINE Alu -7 305 1 315 237 97 0 chr13 10568293 10568386 -91304783 - MER5B DNA MER1_type -31 147 46 6523 133 25 10 chr13 10568391 10569626 -91303543 - L1MA5A LINE L1 0 6939 5690 1231 189 70 0 chr13 10569614 10569927 -91303242 - L1MA5A LINE L1 -2885 3903 3569 * 21 71 0 0 chr13 10569929 10569971 -91303198 + AT_rich Low_complexity Low_complexity 1 42 0 305 218 0 2 chr13 10569980 10570064 -91303105 - L1ME1 LINE L1 -1 6177 6092 8140 166 38 18 chr13 10570274 10570912 -91302257 - L1PA16 LINE L1 0 6166 5542 279 0 0 0 chr13 10570912 10570943 -91302226 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 8140 166 38 18 chr13 10570943 10572819 -91300350 - L1PA16 LINE L1 -624 5542 3611 1255 240 13 0 chr13 10572828 10573136 -91300033 - L1MA5A LINE L1 -3227 3561 3250 2194 108 16 3 chr13 10573146 10573451 -91299718 - AluSx SINE Alu -3 309 1 7686 203 15 34 chr13 10573451 10575516 -91297653 - L1MA5A LINE L1 -3958 2831 807 5759 219 34 28 chr13 10575515 10576860 -91296309 - L1M2c LINE L1 -5424 1365 14 * 2448 92 3 0 chr13 10576926 10577231 -91295938 + AluSp SINE Alu 1 306 -7 226 189 38 0 chr13 10577275 10577328 -91295841 - MLT1J LTR MaLR -35 476 422 230 178 100 78 chr13 10577512 10577602 -91295567 - MLT1J LTR MaLR -341 170 79 543 237 23 8 chr13 10577674 10577805 -91295364 + MER5B DNA MER1_type 1 133 -45 196 268 36 0 chr13 10578214 10578270 -91294899 + MIR SINE MIR 104 161 -101 * 239 269 0 0 chr13 10578259 10578326 -91294843 - MIR SINE MIR 0 262 196 203 133 22 22 chr13 10578326 10578371 -91294798 + (TA)n Simple_repeat Simple_repeat 2 46 0 635 275 26 36 chr13 10578371 10578544 -91294625 - MIR SINE MIR -57 205 33 2577 132 34 12 chr13 10578544 10578961 -91294208 + MSTA LTR MaLR 3 428 0 635 275 26 36 chr13 10578961 10578980 -91294189 - MIR SINE MIR -229 33 15 1094 80 0 66 chr13 10579108 10579259 -91293910 + AluSq/x SINE Alu 1 141 -171 1001 149 54 0 chr13 10579315 10579483 -91293686 - MSTA LTR MaLR 0 428 252 1111 105 0 7 chr13 10579493 10579645 -91293524 + AluSg/x SINE Alu 154 304 -8 182 83 56 0 chr13 10579764 10579800 -91293369 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 352 238 12 0 chr13 10581861 10581941 -91291228 + MER5B DNA MER1_type 95 175 -3 311 292 75 31 chr13 10582015 10582176 -91290993 + MER5A DNA MER1_type 1 179 -10 471 220 0 0 chr13 10582226 10582326 -91290843 - MER5A DNA MER1_type -79 110 11 321 298 71 30 chr13 10582560 10582728 -91290441 - MER5B DNA MER1_type -3 175 1 809 164 0 8 chr13 10583246 10583403 -91289766 + FLAM_C SINE Alu 1 156 0 1379 161 6 129 chr13 10583797 10584138 -91289031 - AluJo SINE Alu -1 301 3 180 322 133 38 chr13 10584189 10584400 -91288769 - MIR SINE MIR -12 250 20 2665 144 31 5 chr13 10584551 10584968 -91288201 + MSTA LTR MaLR 1 428 0 696 106 106 0 chr13 10585280 10585393 -91287776 - L1MD3 LINE L1 -1 7994 7870 2344 87 0 10 chr13 10585416 10585714 -91287455 - AluSx SINE Alu -17 295 1 269 303 34 0 chr13 10588591 10588680 -91284489 + MIR3 SINE MIR 110 201 -7 2498 185 113 16 chr13 10589054 10589675 -91283494 - L1MC3 LINE L1 -1 7784 7104 26 0 0 0 chr13 10590105 10590131 -91283038 + AT_rich Low_complexity Low_complexity 1 26 0 401 289 79 9 chr13 10591244 10591358 -91281811 - L2 LINE L2 0 3272 3151 344 277 105 45 chr13 10591427 10591694 -91281475 - L1ME4a LINE L1 -248 5873 5591 404 247 34 102 chr13 10593355 10593590 -91279579 - MER112 DNA MER1_type -14 246 28 1908 146 21 4 chr13 10594903 10595211 -91277958 - AluSx SINE Alu 0 313 1 261 272 143 47 chr13 10597094 10597373 -91275796 - MLT1J LTR MaLR -95 416 111 21 0 0 0 chr13 10597822 10597843 -91275326 + AT_rich Low_complexity Low_complexity 1 21 0 285 256 96 24 chr13 10598523 10598648 -91274521 - MLT1J LTR MaLR -24 487 354 622 233 23 79 chr13 10598682 10598948 -91274221 - MLT1J LTR MaLR -250 261 11 368 266 44 35 chr13 10599475 10599678 -91273491 - L1MC4a LINE L1 -1751 6057 5853 1355 155 10 113 chr13 10600240 10600549 -91272620 - AluJo SINE Alu -1 311 35 213 222 0 0 chr13 10605225 10605270 -91267899 - MIR SINE MIR -63 145 101 190 316 86 70 chr13 10606355 10606542 -91266627 + L2 LINE L2 3045 3234 -38 738 111 23 32 chr13 10606555 10606776 -91266393 + (TGGA)n Simple_repeat Simple_repeat 1 219 0 238 350 71 29 chr13 10606795 10606935 -91266234 + MIR SINE MIR 2 147 -115 182 88 0 29 chr13 10619626 10619660 -91253509 + (TG)n Simple_repeat Simple_repeat 2 34 0 412 242 83 25 chr13 10624312 10624432 -91248737 + L2 LINE L2 3136 3262 -10 348 318 7 7 chr13 10624844 10624998 -91248171 + (TG)n Simple_repeat Simple_repeat 1 154 0 359 262 153 15 chr13 10625566 10625735 -91247434 - MER112 DNA MER1_type -2 258 55 387 0 0 0 chr13 10625735 10625778 -91247391 + (TG)n Simple_repeat Simple_repeat 2 44 0 359 262 153 15 chr13 10625778 10625810 -91247359 - MER112 DNA MER1_type -205 55 29 1022 176 11 0 chr13 10627391 10627579 -91245590 + MLT1A1 LTR MaLR 1 190 -175 674 205 94 0 chr13 10628633 10628804 -91244365 + MER53 DNA DNA 3 189 0 203 326 68 30 chr13 10629789 10629921 -91243248 - MIR SINE MIR -50 212 76 211 291 109 18 chr13 10630664 10630817 -91242352 - MIR3 SINE MIR -39 169 1 544 304 52 5 chr13 10630823 10631017 -91242152 + Charlie8 DNA MER1_type 1 203 -2214 1932 93 54 32 chr13 10631946 10632259 -91240910 - THE1B LTR MaLR -44 320 1 2159 108 0 10 chr13 10633539 10633835 -91239334 + AluY SINE Alu 1 293 -18 306 0 0 0 chr13 10633878 10633912 -91239257 + (TG)n Simple_repeat Simple_repeat 2 35 0 957 152 45 15 chr13 10634192 10634219 -91238950 + Tigger3(Golem) DNA MER2_type 2478 2503 -525 2556 46 7 10 chr13 10634219 10634522 -91238647 + AluY SINE Alu 3 304 -7 957 152 45 15 chr13 10634522 10634692 -91238477 + Tigger3(Golem) DNA MER2_type 2503 2681 -347 262 171 51 62 chr13 10634694 10634870 -91238299 + (CACTT)n Simple_repeat Simple_repeat 3 176 0 * 402 167 75 46 chr13 10634775 10634949 -91238220 + (CTCA)n Simple_repeat Simple_repeat 2 180 0 1974 130 56 37 chr13 10634976 10635352 -91237817 + Tigger3(Golem) DNA MER2_type 2646 3028 -1 3074 205 94 16 chr13 10635845 10635970 -91237199 - Charlie1 DNA MER1_type 0 2761 2647 1904 171 0 10 chr13 10635970 10636274 -91236895 + AluJb SINE Alu 1 301 -11 3074 205 94 16 chr13 10636274 10636957 -91236212 - Charlie1 DNA MER1_type -114 2647 1890 378 277 91 41 chr13 10637159 10637264 -91235905 + L1MC4 LINE L1 7709 7807 -235 2909 3 0 0 chr13 10637264 10637570 -91235599 - AluYa5 SINE Alu -5 306 1 378 277 91 41 chr13 10637570 10637782 -91235387 + L1MC4 LINE L1 7807 8042 0 181 255 248 60 chr13 10638873 10639022 -91234147 - L3 LINE CR1 -500 1077 901 3257 113 51 2 chr13 10639734 10640221 -91232948 - MER9 LTR ERVK 0 511 1 399 21 0 0 chr13 10640376 10640424 -91232745 + (TG)n Simple_repeat Simple_repeat 2 49 0 234 298 24 12 chr13 10641339 10641423 -91231746 + L2 LINE L2 3184 3268 -4 1047 223 27 29 chr13 10641816 10642129 -91231040 - MLT1E LTR MaLR -46 547 272 256 275 38 0 chr13 10642108 10642188 -91230981 - MLT1E1 LTR MaLR -253 401 319 * 2029 138 14 7 chr13 10642684 10642981 -91230188 + AluSx SINE Alu 1 299 -13 250 182 0 0 chr13 10644602 10644646 -91228523 - MER116 DNA Mariner -36 44 1 337 374 46 10 chr13 10645567 10645762 -91227407 + MIR SINE MIR 2 203 -59 207 0 0 0 chr13 10646598 10646621 -91226548 + (ATAGG)n Simple_repeat Simple_repeat 3 25 0 263 286 41 20 chr13 10647106 10647204 -91225965 - MIR SINE MIR -46 216 117 377 250 11 11 chr13 10648017 10648105 -91225064 - MER5B DNA MER1_type -90 88 1 220 276 11 65 chr13 10648770 10648955 -91224214 + C-rich Low_complexity Low_complexity 3 177 0 * 256 262 0 71 chr13 10648835 10649003 -91224166 + CT-rich Low_complexity Low_complexity 3 158 0 243 297 68 51 chr13 10649525 10649643 -91223526 + L2 LINE L2 3145 3264 -8 1265 168 39 13 chr13 10649951 10650183 -91222986 - AluJb SINE Alu -16 296 59 2417 76 3 0 chr13 10650183 10650474 -91222695 - AluSq SINE Alu -21 292 1 23 54 0 0 chr13 10650589 10650626 -91222543 + AT_rich Low_complexity Low_complexity 1 37 0 434 300 82 39 chr13 10650738 10650995 -91222174 - L1ME4a LINE L1 -216 5905 5638 2630 48 0 10 chr13 10653479 10653789 -91219380 - AluY SINE Alu -2 309 3 2299 119 58 5 chr13 10653795 10654206 -91218963 - Tigger3b DNA MER2_type -528 703 271 306 190 139 13 chr13 10654207 10654286 -91218883 - L1MC4 LINE L1 -1342 6700 6612 1324 205 40 0 chr13 10654311 10654584 -91218585 - Tigger3b DNA MER2_type -947 284 1 23 33 0 0 chr13 10654726 10654756 -91218413 + AT_rich Low_complexity Low_complexity 1 30 0 398 270 108 9 chr13 10654810 10654921 -91218248 - L2 LINE L2 0 3313 3192 547 216 22 36 chr13 10656068 10656134 -91217035 - L1MA8 LINE L1 -5 6286 6221 1400 168 17 9 chr13 10656134 10656366 -91216803 + MER46A DNA MER2_type 1 234 -2 547 216 22 36 chr13 10656366 10656438 -91216731 - L1MA8 LINE L1 -70 6221 6150 890 190 123 0 chr13 10656895 10657090 -91216079 + MER20 DNA MER1_type 1 219 0 280 257 6 109 chr13 10658051 10658226 -91214943 - MIR SINE MIR 0 262 106 279 318 91 11 chr13 10658433 10658608 -91214561 + MIR SINE MIR 20 206 -56 626 146 16 24 chr13 10659841 10659964 -91213205 + L1MB3 LINE L1 6061 6182 -1 2626 187 64 3 chr13 10659989 10660567 -91212602 + L1MB7 LINE L1 5572 6184 0 378 219 6 130 chr13 10662417 10662586 -91210583 + MER58C DNA MER1_type 45 192 -23 305 163 33 43 chr13 10663142 10663234 -91209935 + LTR33 LTR ERVL 423 513 -8 209 191 85 0 chr13 10663488 10663535 -91209634 - L2 LINE L2 -8 3264 3214 210 298 95 0 chr13 10663566 10663650 -91209519 - MIR SINE MIR -116 146 55 301 264 103 0 chr13 10664146 10664233 -91208936 + MIR SINE MIR 64 159 -103 1745 152 7 39 chr13 10664342 10664651 -91208518 + AluJo SINE Alu 1 299 -13 363 228 315 0 chr13 10664653 10664780 -91208389 + MIR SINE MIR 92 258 -4 305 138 69 0 chr13 10664896 10664954 -91208215 - MADE1 DNA Mariner 0 80 19 638 148 4 179 chr13 10667380 10667609 -91205560 - MER53 DNA DNA 0 189 1 2343 77 7 3 chr13 10668421 10668721 -91204448 - AluY SINE Alu -10 301 1 1825 192 0 19 chr13 10669783 10670100 -91203069 + AluJo SINE Alu 1 311 -1 2046 113 0 8 chr13 10673141 10673407 -91199762 - AluSx SINE Alu -15 297 34 231 250 109 77 chr13 10673840 10673996 -91199173 - MIR3 SINE MIR -21 187 27 347 234 13 0 chr13 10675840 10675917 -91197252 - MIR SINE MIR -74 188 111 220 282 111 34 chr13 10676243 10676360 -91196809 - L2 LINE L2 -1 3271 3146 295 233 0 0 chr13 10676428 10676488 -91196681 + MER5A DNA MER1_type 47 106 -83 2018 86 0 107 chr13 10677899 10678236 -91194933 - AluSc SINE Alu -8 301 1 541 224 6 73 chr13 10679185 10679364 -91193805 - MER112 DNA MER1_type -91 169 3 222 217 319 0 chr13 10680129 10680198 -91192971 - L2 LINE L2 -6 3307 3217 307 259 159 45 chr13 10680200 10680401 -91192768 - L1ME4a LINE L1 -139 5982 5759 375 204 41 0 chr13 10681761 10681859 -91191310 + L1ME4a LINE L1 6011 6112 -9 1019 202 19 90 chr13 10681945 10682284 -91190885 + L1MC4 LINE L1 7686 7999 -43 2143 132 3 6 chr13 10682284 10682595 -91190574 - AluSx SINE Alu -2 310 1 1019 202 19 90 chr13 10682595 10682622 -91190547 + L1MC4 LINE L1 7999 8026 -16 416 263 191 26 chr13 10683579 10683773 -91189396 + MIR SINE MIR 37 262 0 330 169 0 0 chr13 10684158 10684223 -91188946 + (CA)n Simple_repeat Simple_repeat 2 66 0 1624 178 3 24 chr13 10684612 10684904 -91188265 + AluJb SINE Alu 1 286 -26 334 236 36 45 chr13 10684959 10685069 -91188100 - MIR SINE MIR -1 261 153 359 247 226 14 chr13 10686963 10687109 -91186060 + L2 LINE L2 2366 2542 -772 25 90 0 0 chr13 10689081 10689148 -91184021 + GC_rich Low_complexity Low_complexity 1 67 0 213 94 0 0 chr13 10689288 10689320 -91183849 + (CGGGG)n Simple_repeat Simple_repeat 1 32 0 205 78 0 78 chr13 10689480 10689531 -91183638 + (CCCCCG)n Simple_repeat Simple_repeat 1 47 0 628 140 7 127 chr13 10689959 10690109 -91183060 - FLAM_C SINE Alu -1 132 1 1355 224 11 14 chr13 10690648 10690934 -91182235 - AluJo SINE Alu -15 297 13 923 198 6 0 chr13 10690997 10691159 -91182010 - FRAM SINE Alu -3 163 1 232 158 18 35 chr13 10691161 10691218 -91181951 + MIR SINE MIR 201 256 -6 2286 104 3 0 chr13 10691234 10691542 -91181627 + AluSc SINE Alu 1 309 0 226 329 35 12 chr13 10691711 10691796 -91181373 + MIR SINE MIR 31 117 -145 183 184 0 0 chr13 10691863 10691901 -91181268 + CT-rich Low_complexity Low_complexity 2 39 0 297 288 132 51 chr13 10692460 10692636 -91180533 + MIR SINE MIR 20 207 -55 2057 164 31 31 chr13 10692665 10693087 -91180082 - MSTB1 LTR MaLR -3 429 8 5279 171 61 30 chr13 10693100 10693571 -91179598 + L1MC2 LINE L1 4829 5284 -1060 2016 129 0 3 chr13 10693571 10693892 -91179277 + AluSq SINE Alu 1 320 0 5279 171 61 30 chr13 10693892 10694695 -91178474 + L1MC2 LINE L1 5284 6165 -179 2216 113 7 0 chr13 10694695 10694995 -91178174 + AluSq SINE Alu 1 302 -11 5279 171 61 30 chr13 10694995 10695170 -91177999 + L1MC2 LINE L1 6165 6333 -11 562 325 106 17 chr13 10695302 10695539 -91177630 + MIR SINE MIR 4 261 -1 183 274 85 66 chr13 10696144 10696250 -91176919 + MIR SINE MIR 18 125 -83 1841 210 77 64 chr13 10696615 10697162 -91176007 - MLT2B3 LTR ERVL 0 554 1 399 283 20 56 chr13 10697170 10697302 -91175867 + L1ME4a LINE L1 5652 5776 -345 2857 185 43 2 chr13 10697302 10697837 -91175332 - MER41D LTR ERV1 0 557 1 399 283 20 56 chr13 10697837 10697902 -91175267 + L1ME4a LINE L1 5776 5842 -279 225 250 10 40 chr13 10697975 10698075 -91175094 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 390 169 0 0 chr13 10698429 10698494 -91174675 + Tigger2 DNA MER2_type 3 67 -2651 2579 138 28 2 chr13 10698496 10698923 -91174246 + Tigger2 DNA MER2_type 2280 2717 -1 1990 186 5 25 chr13 10699319 10699717 -91173452 + MLT1B LTR MaLR 1 390 0 352 335 89 15 chr13 10700150 10700329 -91172840 + MIR SINE MIR 4 192 -70 222 228 18 18 chr13 10700364 10700421 -91172748 + CT-rich Low_complexity Low_complexity 5 61 0 369 267 160 0 chr13 10701053 10701184 -91171985 + MIR SINE MIR 85 236 -26 805 184 173 0 chr13 10701505 10701690 -91171479 - MER20 DNA MER1_type -1 218 2 465 244 0 0 chr13 10702155 10702241 -91170928 - FRAM/FAM SINE Alu -91 85 1 813 261 5 0 chr13 10703020 10703208 -91169961 + MIR SINE MIR 71 259 -3 1032 163 6 17 chr13 10703209 10703387 -91169782 + AluJo SINE Alu 125 300 -12 586 231 75 59 chr13 10703739 10703994 -91169175 + MLT1K LTR MaLR 330 588 0 268 308 135 10 chr13 10704063 10704167 -91169002 + L2 LINE L2 3132 3248 -24 2343 106 0 0 chr13 10704351 10704654 -91168515 - AluSg SINE Alu -7 303 1 2065 122 3 7 chr13 10706083 10706379 -91166790 - AluSx SINE Alu 0 312 18 222 338 62 28 chr13 10707781 10707926 -91165243 - MIR SINE MIR -46 216 67 723 248 100 34 chr13 10708011 10708482 -91164687 + L1MDa LINE L1 1569 2070 -4470 3614 94 31 2 chr13 10708677 10709264 -91163905 + L1PB1 LINE L1 1540 2143 -4720 13807 181 14 3 chr13 10709270 10713466 -91159703 + L1PB1 LINE L1 2567 6866 -1 408 308 165 45 chr13 10713524 10714141 -91159028 - L1M4 LINE L1 -964 5182 4492 579 300 99 32 chr13 10714219 10714815 -91158354 + L1MEd LINE L1 325 960 -5159 4046 145 26 22 chr13 10714815 10715051 -91158118 + L1MB3 LINE L1 5450 5684 -499 3075 171 45 15 chr13 10715051 10715494 -91157675 - MER7C DNA MER2_type -2426 602 136 2188 91 3 3 chr13 10715494 10715781 -91157388 + AluSc SINE Alu 1 287 -22 3075 171 45 15 chr13 10715781 10715921 -91157248 - MER7C DNA MER2_type -2892 136 2 4046 145 26 22 chr13 10715921 10716408 -91156761 + L1MB3 LINE L1 5684 6176 -7 201 108 0 0 chr13 10716414 10716451 -91156718 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 242 242 16 16 chr13 10716905 10716967 -91156202 + L1MCa LINE L1 561 622 -5497 302 272 19 71 chr13 10717122 10717483 -91155686 + L1MCa LINE L1 820 1177 -5125 1400 164 10 103 chr13 10717483 10717794 -91155375 + AluJo SINE Alu 1 282 -30 302 272 19 71 chr13 10717794 10718023 -91155146 + L1MCa LINE L1 1177 1416 -4886 238 61 0 0 chr13 10718154 10718187 -91154982 + L1M1 LINE L1 2882 2914 -4651 715 206 0 0 chr13 10718194 10718325 -91154844 + FLAM_A SINE Alu 3 133 0 22398 177 17 38 chr13 10718362 10722743 -91150426 + L1PA11 LINE L1 1 5601 -2011 332 90 11 0 chr13 10722743 10722803 -91150366 + Alu SINE Alu 251 300 0 22398 177 17 38 chr13 10722803 10724088 -91149081 + L1PA11 LINE L1 5601 6911 -701 28919 112 14 62 chr13 10724136 10726682 -91146487 - L1PA7 LINE L1 -13 6141 3475 2180 96 0 46 chr13 10726682 10727005 -91146164 - AluY SINE Alu -3 308 1 28919 112 14 62 chr13 10727005 10730898 -91142271 - L1PA7 LINE L1 -2679 3475 20 4707 113 31 3 chr13 10730898 10731606 -91141563 + L1PA11 LINE L1 6883 7610 -2 361 249 0 60 chr13 10731619 10731804 -91141365 + L1MCa LINE L1 1473 1698 -4486 604 207 8 0 chr13 10732039 10732160 -91141009 - AluJb SINE Alu -19 293 172 1817 275 40 52 chr13 10732193 10732971 -91140198 + L1MCa LINE L1 2263 3049 -3080 2334 94 0 0 chr13 10732971 10733259 -91139910 - AluSc SINE Alu -21 288 1 1817 275 40 52 chr13 10733259 10733564 -91139605 + L1MCa LINE L1 3049 3333 -2796 1897 120 10 19 chr13 10733564 10733873 -91139296 - L1PA13 LINE L1 -7 6156 5851 1817 275 40 52 chr13 10733873 10734003 -91139166 + L1MCa LINE L1 3333 3463 -2666 313 250 0 0 chr13 10734124 10734204 -91138965 - MER116 DNA Mariner 0 80 1 1854 204 89 27 chr13 10734312 10734876 -91138293 - LTR48B LTR ERV1 -45 599 1 745 267 70 56 chr13 10734909 10735330 -91137839 + L1MCa LINE L1 3829 4257 -1872 41013 31 21 1 chr13 10735498 10741498 -91131671 - L1HS LINE L1 0 6155 32 389 216 10 0 chr13 10741504 10741601 -91131568 - L1M4 LINE L1 -3110 3036 2939 200 128 26 0 chr13 10741616 10741655 -91131514 + (TA)n Simple_repeat Simple_repeat 2 41 0 198 0 0 0 chr13 10741751 10741773 -91131396 + (TG)n Simple_repeat Simple_repeat 2 23 0 4402 220 114 5 chr13 10741774 10743236 -91129933 - L1MEc LINE L1 -1902 4313 2692 554 97 87 5 chr13 10743238 10743255 -91129914 + (TA)n Simple_repeat Simple_repeat 1 15 -803 27 0 0 0 chr13 10743255 10743282 -91129887 + AT_rich Low_complexity Low_complexity 1 27 0 2131 130 3 0 chr13 10743282 10743574 -91129595 + AluSq SINE Alu 1 293 -20 554 97 87 5 chr13 10743574 10743994 -91129175 + (TA)n Simple_repeat Simple_repeat 14 818 0 3181 168 50 137 chr13 10744107 10744954 -91128215 + MER21A LTR ERV1 72 844 -87 582 236 0 30 chr13 10744999 10745164 -91128005 - L1MEc LINE L1 -3522 2693 2534 1349 229 33 54 chr13 10745164 10745539 -91127630 - MLT1A1 LTR MaLR -2 424 1 229 188 21 0 chr13 10745539 10745587 -91127582 - L1MEc LINE L1 -3687 2528 2480 1509 191 7 28 chr13 10745611 10745893 -91127276 - AluJo SINE Alu -36 276 1 1419 301 62 33 chr13 10745902 10746830 -91126339 - L1MEc LINE L1 -3873 2523 1569 1139 121 24 0 chr13 10746855 10747021 -91126148 + AluSx SINE Alu 1 170 -142 324 133 0 0 chr13 10747021 10747066 -91126103 - Alu SINE Alu -257 45 1 708 282 39 39 chr13 10747066 10747346 -91125823 + L1ME4a LINE L1 5481 5760 -2048 288 230 53 86 chr13 10747603 10747755 -91125414 + L1ME4a LINE L1 5879 6025 -96 3811 136 11 0 chr13 10748280 10748801 -91124368 + MER1A DNA MER1_type 1 527 0 684 239 0 8 chr13 10749643 10749777 -91123392 + FLAM_A SINE Alu 1 133 0 1983 152 173 14 chr13 10749910 10750279 -91122890 - MSTA LTR MaLR 0 428 1 1291 198 57 25 chr13 10750339 10750622 -91122547 - AluSx SINE Alu -20 292 1 2050 123 0 11 chr13 10750763 10751125 -91122044 - AluSq SINE Alu 0 359 1 576 96 0 0 chr13 10751163 10751246 -91121923 - L1PB3 LINE L1 -3 6151 6069 237 256 19 42 chr13 10751359 10751463 -91121706 + L1MC4a LINE L1 5519 5621 -549 4985 80 12 11 chr13 10752059 10752708 -91120461 - L1PA11 LINE L1 0 6174 5525 371 279 66 56 chr13 10753295 10753405 -91119764 + L1MC4a LINE L1 5612 5719 -2089 1985 143 7 7 chr13 10753405 10753876 -91119293 + AluSx SINE Alu 1 312 0 371 279 66 56 chr13 10753876 10754052 -91119117 + L1MC4a LINE L1 5719 5901 -1907 5216 44 2 2 chr13 10754052 10754643 -91118526 - LTR10C LTR ERV1 0 591 1 575 260 105 57 chr13 10754934 10755372 -91117797 + L1MC4a LINE L1 3540 3998 -2148 234 269 92 8 chr13 10755615 10755745 -91117424 + LTR33 LTR ERVL 305 445 -76 2998 209 28 16 chr13 10755751 10756044 -91117125 + MER82 DNA MER2_type 7 295 -358 5885 73 27 7 chr13 10756044 10756795 -91116374 + MER4E LTR ERV1 1 766 0 2998 209 28 16 chr13 10756795 10757139 -91116030 + MER82 DNA MER2_type 295 652 -1 953 284 118 34 chr13 10757209 10757585 -91115584 + L1MC4a LINE L1 3998 4341 -1805 2926 10 0 0 chr13 10757585 10757897 -91115272 + AluYb8 SINE Alu 1 312 -6 953 284 118 34 chr13 10757897 10758373 -91114796 + L1MC4a LINE L1 4341 4922 -1224 940 290 102 19 chr13 10758382 10758998 -91114171 + L1MC4a LINE L1 5215 5403 -743 34837 87 8 54 chr13 10759143 10765590 -91107579 + L1PA3 LINE L1 12 6155 0 7208 56 24 0 chr13 10765606 10767262 -91105907 + L1PA7 LINE L1 4480 6154 0 1055 117 32 0 chr13 10767365 10767519 -91105650 - L1MB2 LINE L1 -3 6168 6010 2232 99 0 0 chr13 10767524 10767807 -91105362 + AluSx SINE Alu 1 283 -29 210 128 0 0 chr13 10767809 10767848 -91105321 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1872 138 43 98 chr13 10767857 10768254 -91104915 - L1MB2 LINE L1 -153 6018 5644 1398 179 46 21 chr13 10768254 10768752 -91104417 - MER44D DNA MER2_type -1 604 14 380 145 16 0 chr13 10768753 10768815 -91104354 - L1MB2 LINE L1 -660 5640 5578 360 0 0 0 chr13 10768815 10768855 -91104314 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 2256 70 0 7 chr13 10768858 10769143 -91104026 - AluY SINE Alu -28 283 1 636 342 8 4 chr13 10769462 10769719 -91103450 + MLT1I LTR MaLR 97 354 -55 1756 147 27 14 chr13 10769723 10769859 -91103310 + AluJb SINE Alu 1 134 -178 2208 115 7 0 chr13 10769859 10770164 -91103005 + AluSx SINE Alu 1 307 -5 1756 147 27 14 chr13 10770164 10770319 -91102850 + AluJb SINE Alu 134 296 -16 290 197 43 86 chr13 10771642 10771759 -91101410 + MIR SINE MIR 45 156 -106 2305 91 0 3 chr13 10772445 10772741 -91100428 - AluSc SINE Alu -14 295 1 303 131 0 33 chr13 10775149 10775210 -91097959 - L1MB5 LINE L1 -1 6173 6115 2017 94 72 0 chr13 10775211 10775487 -91097682 + AluSq SINE Alu 1 296 -17 2292 163 20 13 chr13 10776029 10776422 -91096747 - MER61B LTR ERV1 -29 396 1 223 333 62 0 chr13 10777164 10777260 -91095909 - MER5A DNA MER1_type -50 139 38 337 255 167 23 chr13 10777317 10777503 -91095666 + MIR SINE MIR 32 248 -14 1966 164 56 26 chr13 10777513 10777891 -91095278 - MLT1B LTR MaLR -1 389 1 228 197 66 49 chr13 10779103 10779164 -91094005 - MIR3 SINE MIR -9 199 138 509 243 134 99 chr13 10779253 10779648 -91093521 + MLT1H LTR MaLR 125 533 -16 1237 224 85 54 chr13 10779701 10780147 -91093022 - L1MC4 LINE L1 -692 7350 6891 1154 229 29 7 chr13 10780162 10780441 -91092728 - L1M4 LINE L1 -2376 3770 3486 244 309 34 20 chr13 10780457 10780606 -91092563 - L1M4 LINE L1 -3793 2353 2203 240 254 16 16 chr13 10780823 10780886 -91092283 + L2 LINE L2 3248 3310 -3 1163 231 107 72 chr13 10780898 10781356 -91091813 - MLT1J LTR MaLR -1 510 37 1062 253 118 31 chr13 10781557 10781832 -91091337 - LTR33 LTR ERVL -2 519 187 981 196 12 6 chr13 10781832 10782005 -91091164 - MER45A DNA AcHobo 0 178 5 1062 253 118 31 chr13 10782005 10782187 -91090982 - LTR33 LTR ERVL -334 187 22 510 268 87 0 chr13 10782207 10782345 -91090824 - L2 LINE L2 -556 2758 2609 312 261 90 77 chr13 10782366 10782600 -91090569 + MER112 DNA MER1_type 23 259 -1 320 182 13 52 chr13 10782610 10782687 -91090482 + MLT1D LTR MaLR 6 79 -426 1905 206 22 31 chr13 10782719 10783170 -91089999 + MLT1D LTR MaLR 58 504 -1 661 271 107 64 chr13 10783847 10783996 -91089173 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 10783996 10784294 -91088875 + AluJo SINE Alu 1 295 -17 661 271 107 64 chr13 10784294 10785175 -91087994 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 10785264 10785585 -91087584 + L1ME3 LINE L1 5484 5829 -333 255 61 0 0 chr13 10785606 10785639 -91087530 + (T)n Simple_repeat Simple_repeat 1 33 0 1703 126 4 0 chr13 10785649 10785879 -91087290 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 10786498 10786538 -91086631 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 10786538 10786841 -91086328 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 10786841 10786927 -91086242 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 10787472 10787501 -91085668 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 10787664 10787765 -91085404 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 10787765 10787857 -91085312 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 10787858 10787990 -91085179 + MIR SINE MIR 108 243 -19 225 302 98 78 chr13 10788001 10788143 -91085026 + L2 LINE L2 2554 2705 -609 2151 116 10 3 chr13 10788143 10788445 -91084724 + AluSx SINE Alu 1 304 -8 225 302 98 78 chr13 10788445 10788547 -91084622 + L2 LINE L2 2705 2803 -511 947 145 0 0 chr13 10788584 10788722 -91084447 - FRAM SINE Alu -21 155 18 269 296 96 0 chr13 10789761 10789876 -91083293 + L2 LINE L2 3137 3262 -10 326 204 133 0 chr13 10790142 10790240 -91082929 + L1ME LINE L1 5707 5817 -304 210 200 43 14 chr13 10790365 10790435 -91082734 + T-rich Low_complexity Low_complexity 2 73 0 902 170 0 0 chr13 10790440 10790599 -91082570 + L1MD3 LINE L1 7831 7989 -6 47 19 0 0 chr13 10790599 10790653 -91082516 + AT_rich Low_complexity Low_complexity 1 54 0 646 271 107 64 chr13 10791041 10791190 -91081979 + L1M2 LINE L1 4346 4487 -1709 1443 208 10 20 chr13 10791190 10791488 -91081681 + AluJo SINE Alu 1 295 -17 646 271 107 64 chr13 10791488 10792368 -91080801 + L1M2 LINE L1 4487 5453 -743 872 287 84 6 chr13 10792457 10792778 -91080391 + L1ME3 LINE L1 5484 5829 -333 264 59 0 0 chr13 10792799 10792833 -91080336 + (T)n Simple_repeat Simple_repeat 1 34 0 1641 135 4 0 chr13 10792842 10793072 -91080097 - AluSx SINE Alu -81 231 1 302 268 197 8 chr13 10793692 10793732 -91079437 - MER5A DNA MER1_type -14 175 144 1697 168 40 16 chr13 10793732 10794035 -91079134 + AluJo SINE Alu 3 312 0 302 268 197 8 chr13 10794035 10794121 -91079048 - MER5A DNA MER1_type -45 144 25 200 35 35 0 chr13 10794666 10794695 -91078474 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 236 307 0 20 chr13 10794858 10794959 -91078210 + MIR SINE MIR 44 142 -120 459 217 0 0 chr13 10794959 10795051 -91078118 + MER53 DNA DNA 95 186 -3 462 273 30 0 chr13 10795052 10795184 -91077985 + MIR SINE MIR 108 243 -19 2245 97 3 3 chr13 10795337 10795627 -91077542 + AluSx SINE Alu 1 290 -22 1177 171 222 10 chr13 10795627 10795687 -91077482 - L1MD2 LINE L1 -150 6209 6163 216 97 0 0 chr13 10795687 10795718 -91077451 + (TG)n Simple_repeat Simple_repeat 2 32 0 1177 171 222 10 chr13 10795718 10795950 -91077219 - L1MD2 LINE L1 -196 6163 5855 22 0 0 0 chr13 10796553 10796575 -91076594 + AT_rich Low_complexity Low_complexity 1 22 0 251 242 0 48 chr13 10797557 10797619 -91075550 - L2 LINE L2 -6 3307 3249 24 0 0 0 chr13 10798025 10798049 -91075120 + AT_rich Low_complexity Low_complexity 1 24 0 183 139 0 0 chr13 10798249 10798285 -91074884 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 936 161 6 36 chr13 10798519 10798687 -91074482 - FRAM SINE Alu -9 167 5 93 26 0 0 chr13 10798787 10798901 -91074268 + AT_rich Low_complexity Low_complexity 1 114 0 2465 173 32 0 chr13 10798903 10799342 -91073827 - L1MD3 LINE L1 0 7995 7543 1150 224 37 39 chr13 10799399 10799882 -91073287 + MLT1F LTR MaLR 10 542 0 403 277 74 43 chr13 10800018 10800249 -91072920 - L1ME4a LINE L1 -194 5927 5690 347 331 60 7 chr13 10800255 10800406 -91072763 + MIR SINE MIR 1 159 -103 1617 135 104 3 chr13 10800426 10800715 -91072454 - L1MB3 LINE L1 -3 6180 5863 256 111 12 49 chr13 10800822 10800903 -91072266 + (TA)n Simple_repeat Simple_repeat 1 78 0 2079 231 10 0 chr13 10800920 10801332 -91071837 + L1PBa LINE L1 1218 1633 -5230 744 198 8 8 chr13 10801303 10801429 -91071740 + L1PB3 LINE L1 1 126 -6078 * 9192 162 40 14 chr13 10801422 10803677 -91069492 + L1PB3 LINE L1 3527 5724 -487 384 119 0 0 chr13 10803677 10803736 -91069433 + (TA)n Simple_repeat Simple_repeat 2 60 0 9192 162 40 14 chr13 10803736 10803762 -91069407 + L1PB3 LINE L1 5724 5748 -463 2359 98 3 0 chr13 10803762 10804068 -91069101 - AluSq SINE Alu -6 307 1 9192 162 40 14 chr13 10804068 10804394 -91068775 + L1PB3 LINE L1 5748 6207 -4 342 233 21 98 chr13 10804409 10804602 -91068567 + L1M4 LINE L1 5152 5329 -817 489 330 80 30 chr13 10805577 10805938 -91067231 - L2 LINE L2 -87 3226 2848 269 311 226 21 chr13 10806576 10806766 -91066403 - MIR SINE MIR -2 260 32 1651 208 81 40 chr13 10807457 10807904 -91065265 + MLT1C LTR MaLR 1 465 -2 2804 187 64 3 chr13 10809432 10810010 -91063159 - L1MB7 LINE L1 0 6184 5572 665 146 16 24 chr13 10810035 10810158 -91063011 - L1MB3 LINE L1 -1 6182 6061 261 318 91 11 chr13 10811390 10811565 -91061604 - MIR SINE MIR -56 206 20 14722 125 4 29 chr13 10811832 10814259 -91058910 + L1P LINE L1 932 3298 -2848 2134 184 8 23 chr13 10814478 10814874 -91058295 - MLT1B LTR MaLR 0 390 1 2796 138 28 2 chr13 10815270 10815697 -91057472 - Tigger2 DNA MER2_type -1 2717 2280 420 169 0 0 chr13 10815699 10815764 -91057405 - Tigger2 DNA MER2_type -2651 67 3 494 309 64 44 chr13 10816191 10816356 -91056813 - L1ME4a LINE L1 -166 5955 5780 3119 185 43 2 chr13 10816356 10816891 -91056278 + MER41D LTR ERV1 1 557 0 494 309 64 44 chr13 10816891 10817023 -91056146 - L1ME4a LINE L1 -341 5780 5652 2089 208 77 64 chr13 10817031 10817578 -91055591 + MLT2B3 LTR ERVL 1 554 0 250 250 29 0 chr13 10817913 10817981 -91055188 - MLT1K LTR MaLR 0 588 519 555 325 106 17 chr13 10818654 10818891 -91054278 - MIR SINE MIR -1 261 4 5796 164 61 30 chr13 10819023 10819198 -91053971 - L1MC2 LINE L1 -11 6333 6165 2214 113 7 0 chr13 10819198 10819498 -91053671 - AluSq SINE Alu -11 302 1 5796 164 61 30 chr13 10819498 10820301 -91052868 - L1MC2 LINE L1 -179 6165 5284 2009 129 0 3 chr13 10820301 10820622 -91052547 - AluSq SINE Alu 0 320 1 5796 164 61 30 chr13 10820622 10821093 -91052076 - L1MC2 LINE L1 -1060 5284 4829 916 228 29 37 chr13 10821106 10821378 -91051791 + MSTB1 LTR MaLR 8 277 -155 257 157 22 45 chr13 10821384 10821473 -91051696 + CT-rich Low_complexity Low_complexity 2 88 0 260 268 36 6 chr13 10821587 10821755 -91051414 + G-rich Low_complexity Low_complexity 2 174 0 1655 281 70 62 chr13 10872950 10873246 -90999923 - L1ME4a LINE L1 -757 5389 5097 1872 128 0 17 chr13 10873246 10873565 -90999604 - AluSx SINE Alu 0 314 1 1655 281 70 62 chr13 10873565 10874980 -90998189 - L1ME4a LINE L1 -1049 5097 3664 242 294 15 15 chr13 10875041 10875109 -90998060 + AluJ/FLAM SINE Alu 7 74 -228 235 280 30 40 chr13 10875689 10875789 -90997380 - MIR SINE MIR -80 128 30 289 370 69 12 chr13 10875798 10875971 -90997198 + MER5A DNA MER1_type 5 187 -2 971 230 9 22 chr13 10876909 10877135 -90996034 + MER97c DNA MER1_type? 5 227 -863 1381 277 40 11 chr13 10877231 10877678 -90995491 - L1MC4 LINE L1 -151 7891 7432 415 195 145 19 chr13 10877679 10877838 -90995331 + MER97a DNA MER1_type? 688 866 -28 1525 94 24 87 chr13 10878812 10879100 -90994069 - L1MA9 LINE L1 -5 6307 6038 24 32 0 0 chr13 10879344 10879375 -90993794 + AT_rich Low_complexity Low_complexity 1 31 0 1813 92 73 4 chr13 10879444 10879717 -90993452 + AluSq SINE Alu 1 292 -21 764 229 23 23 chr13 10879994 10880169 -90993000 - MER5B DNA MER1_type -3 175 1 320 258 151 54 chr13 10881029 10881308 -90991861 + MLT1J LTR MaLR 111 416 -95 1244 160 13 42 chr13 10883141 10883378 -90989791 + AluJo SINE Alu 35 264 -48 245 172 0 78 chr13 10883378 10883442 -90989727 + Alu SINE Alu 120 165 -10 398 281 39 30 chr13 10884014 10884217 -90988952 + L1MC4a LINE L1 5853 6057 -1751 691 241 22 77 chr13 10884736 10885010 -90988159 + MLT1J LTR MaLR 3 261 -250 315 256 96 24 chr13 10885044 10885169 -90988000 + MLT1J LTR MaLR 354 487 -24 2057 198 39 39 chr13 10935660 10936151 -90937018 - L1MD2 LINE L1 -41 7129 6639 1331 165 15 41 chr13 10936151 10936219 -90936950 - Tigger2a DNA MER2_type -2274 444 376 2428 84 0 0 chr13 10936219 10936517 -90936652 - AluY SINE Alu -13 298 1 1331 165 15 41 chr13 10936517 10936714 -90936455 - Tigger2a DNA MER2_type -2342 376 186 548 165 10 10 chr13 10936722 10936825 -90936344 - Tigger2a DNA MER2_type -331 103 1 2923 200 28 7 chr13 10936825 10937631 -90935538 - L1MD2 LINE L1 -530 6640 5816 274 289 90 12 chr13 10937880 10938046 -90935123 - L1ME4a LINE L1 -222 5899 5721 207 0 0 0 chr13 10938624 10938647 -90934522 + (A)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr13 10938898 10938933 -90934236 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 0 0 0 chr13 10942020 10942047 -90931122 + AT_rich Low_complexity Low_complexity 1 27 0 1084 184 53 5 chr13 10942062 10942268 -90930901 + MER20 DNA MER1_type 4 219 0 5825 239 73 9 chr13 10943251 10945172 -90927997 - L1MD2 LINE L1 -1726 5231 3189 6111 219 51 21 chr13 10945211 10947151 -90926018 - L1MD2 LINE L1 -4846 2009 11 327 293 8 24 chr13 10947402 10947525 -90925644 + L1MD2 LINE L1 6229 6349 -10 29 60 0 0 chr13 10947545 10947595 -90925574 + AT_rich Low_complexity Low_complexity 1 50 0 710 276 245 17 chr13 10947740 10948218 -90924951 + L2 LINE L2 1758 2344 -970 861 187 52 30 chr13 10948222 10948452 -90924717 - MLT1C LTR MaLR -227 240 6 270 319 21 14 chr13 10948469 10948613 -90924556 + L2 LINE L2 3150 3294 -19 182 218 0 18 chr13 10949154 10949209 -90923960 + (TG)n Simple_repeat Simple_repeat 1 54 0 538 223 121 0 chr13 10949228 10949385 -90923784 + MER96B DNA MER1_type? 1 176 -241 24 32 0 0 chr13 10949692 10949723 -90923446 + AT_rich Low_complexity Low_complexity 1 31 0 803 276 46 17 chr13 10949764 10950003 -90923166 + L2 LINE L2 2147 2392 -922 1645 156 125 3 chr13 10950310 10950631 -90922538 + MLT1A1 LTR MaLR 5 364 -1 27 0 0 0 chr13 10951221 10951248 -90921921 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 10953023 10953046 -90920123 + AT_rich Low_complexity Low_complexity 1 23 0 189 229 42 0 chr13 10954074 10954122 -90919047 + L2 LINE L2 3264 3313 0 249 236 18 0 chr13 10954196 10954251 -90918918 - MER45 DNA AcHobo -9 1572 1517 24 0 0 0 chr13 10954491 10954515 -90918654 + AT_rich Low_complexity Low_complexity 1 24 0 444 353 18 0 chr13 10954795 10954962 -90918207 - MIR3 SINE MIR -5 203 34 1870 254 36 14 chr13 10955017 10955510 -90917659 + MLT1J LTR MaLR 5 508 -3 249 33 0 0 chr13 10955931 10955961 -90917208 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 10957721 10957743 -90915426 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr13 10958184 10958214 -90914955 + (CA)n Simple_repeat Simple_repeat 1 30 0 1210 161 60 0 chr13 10959227 10959445 -90913724 - MER46A DNA MER2_type -5 231 1 23 0 0 0 chr13 10959656 10959679 -90913490 + AT_rich Low_complexity Low_complexity 1 23 0 2406 71 0 3 chr13 10959712 10960009 -90913160 - AluY SINE Alu -15 296 1 2085 204 12 66 chr13 10960985 10961564 -90911605 - LTR55 LTR ERV 0 548 1 227 219 68 137 chr13 10961769 10961915 -90911254 - MER5A DNA MER1_type -12 177 42 * 295 340 34 25 chr13 10961799 10961935 -90911234 + MER5A DNA MER1_type 44 175 -3 3519 227 52 20 chr13 10962423 10963685 -90909484 - L1M4 LINE L1 -2734 3648 2346 1468 219 0 24 chr13 10963717 10964014 -90909155 - AluJb SINE Alu -22 290 1 2080 234 49 24 chr13 10964152 10964810 -90908359 - L1M4 LINE L1 -4644 1740 1067 1452 141 25 7 chr13 10965005 10965288 -90907881 + MSTB1 LTR MaLR 145 432 0 849 249 186 16 chr13 10965993 10966374 -90906795 - L2 LINE L2 0 3313 2868 2278 59 3 3 chr13 10966494 10966780 -90906389 - AluY SINE Alu -25 286 1 5739 118 15 3 chr13 10966782 10968312 -90904857 - L1PA11 LINE L1 -267 5907 4360 3443 211 29 17 chr13 10968311 10969199 -90903970 - L1P LINE L1 -749 5397 4499 * 1511 230 15 0 chr13 10969397 10969789 -90903380 - L1M4 LINE L1 -1042 5340 4943 * 2425 237 38 4 chr13 10969786 10970576 -90902593 - L1M4c LINE L1 -2904 3478 2662 2039 112 49 0 chr13 10970592 10970879 -90902290 - AluSq SINE Alu -12 301 1 1324 181 23 15 chr13 10970937 10971196 -90901973 + Tigger7 DNA MER2_type 1 261 -472 388 177 0 0 chr13 10971209 10971271 -90901898 + Tigger7 DNA MER2_type 2425 2486 -1 4904 117 30 18 chr13 10971273 10972277 -90900892 - L1M4c LINE L1 -3748 2634 1616 3693 195 65 27 chr13 10972277 10973098 -90900071 + MER21B LTR ERV1 1 852 -11 1951 145 60 32 chr13 10973118 10973600 -90899569 - L1M4c LINE L1 -4652 1730 1182 1313 121 5 53 chr13 10973603 10973810 -90899359 - AluSg/x SINE Alu -5 307 111 2762 177 32 18 chr13 10973833 10974392 -90898777 - L1M4c LINE L1 -5798 586 20 284 167 69 0 chr13 10974412 10974514 -90898655 + (TA)n Simple_repeat Simple_repeat 1 109 0 650 197 48 0 chr13 10974587 10974734 -90898435 + L1MB8 LINE L1 6016 6169 -9 369 179 16 190 chr13 10975050 10975234 -90897935 - MIR SINE MIR -7 255 104 216 242 0 32 chr13 10976983 10977045 -90896124 + GA-rich Low_complexity Low_complexity 3 62 0 279 313 31 0 chr13 10977627 10977723 -90895446 - MIR3 SINE MIR -25 183 85 1420 219 64 75 chr13 10977826 10978374 -90894795 + MLT1F1 LTR MaLR 1 567 0 3870 199 12 8 chr13 10978601 10979491 -90893678 + L1 LINE L1 3543 4436 -1710 313 276 73 83 chr13 10979789 10980198 -90892971 - L1ME LINE L1 -454 5667 5263 1379 206 33 23 chr13 10980198 10980504 -90892665 + MLT2B1 LTR ERVL 1 309 -211 290 282 112 16 chr13 10981176 10981364 -90891805 - MIR3 SINE MIR 0 208 3 274 315 62 51 chr13 10981713 10981891 -90891278 + MIR3 SINE MIR 27 206 -2 2539 185 43 21 chr13 10983140 10983674 -90889495 + MER44D DNA MER2_type 1 601 -4 2432 141 29 14 chr13 10985574 10985992 -90887177 - MSTA LTR MaLR -4 424 1 692 226 100 0 chr13 10986150 10986340 -90886829 - MER3 DNA MER1_type 0 209 1 201 363 79 25 chr13 10986720 10986960 -90886209 + L2 LINE L2 1172 1424 -1890 272 273 56 56 chr13 10987536 10987679 -90885490 - MIR3 SINE MIR -5 203 61 799 215 30 80 chr13 10988893 10989130 -90884039 - MIR SINE MIR -26 236 12 1575 129 64 10 chr13 10989148 10989298 -90883871 + L1MA9 LINE L1 6002 6142 -170 189 107 0 0 chr13 10989298 10989326 -90883843 + (CA)n Simple_repeat Simple_repeat 1 28 0 1575 129 64 10 chr13 10989326 10989470 -90883699 + L1MA9 LINE L1 6142 6312 0 26 30 0 0 chr13 10989508 10989541 -90883628 + AT_rich Low_complexity Low_complexity 1 33 0 266 217 6 93 chr13 10989579 10989740 -90883429 - L1MC5 LINE L1 -51 7910 7764 283 125 62 0 chr13 10990733 10990781 -90882388 - U2 snRNA snRNA -137 51 1 213 336 42 17 chr13 10991245 10991364 -90881805 - L2 LINE L2 -32 3281 3160 1951 126 29 0 chr13 10991935 10992213 -90880956 + AluSg1 SINE Alu 1 286 -23 195 402 52 35 chr13 10992229 10992577 -90880592 - L2 LINE L2 -849 2465 2112 1314 168 17 4 chr13 10993368 10993600 -90879569 - MER46A DNA MER2_type 0 236 2 236 315 121 6 chr13 10993953 10994118 -90879051 + L3 LINE CR1 1298 1481 -96 344 211 158 0 chr13 10994262 10994357 -90878812 + MIR3 SINE MIR 88 197 -11 2835 182 15 26 chr13 10994786 10995389 -90877780 + MER7C DNA MER2_type 6 601 -1 21 0 0 0 chr13 10997829 10997850 -90875319 + AT_rich Low_complexity Low_complexity 1 21 0 320 313 47 16 chr13 10998337 10998465 -90874704 + MIR SINE MIR 23 154 -108 282 250 129 43 chr13 11000092 11000232 -90872937 + MIR SINE MIR 97 248 -14 289 271 56 9 chr13 11000251 11000358 -90872811 + L1ME4a LINE L1 6010 6121 0 216 306 0 14 chr13 11000750 11000822 -90872347 + MIR SINE MIR 2 72 -190 490 258 107 56 chr13 11001044 11001196 -90871973 - L2 LINE L2 -5 3308 3165 2136 121 0 0 chr13 11001196 11001506 -90871663 + AluSc SINE Alu 1 310 0 490 258 107 56 chr13 11001506 11001923 -90871246 - L2 LINE L2 -148 3165 2708 519 39 65 0 chr13 11002479 11002556 -90870613 + L1MA4A LINE L1 6219 6300 -3 244 257 72 26 chr13 11003388 11003505 -90869664 - HAL1b LINE L1 -19 6102 1219 1415 239 19 38 chr13 11004423 11004791 -90868378 - MLT2C1 LTR ERVL -5 392 32 290 209 15 0 chr13 11004787 11004854 -90868315 - MLT2C1 LTR ERVL -324 73 6 * 624 273 32 14 chr13 11005142 11005358 -90867811 - MIR SINE MIR -10 252 33 1516 113 45 9 chr13 11005377 11005599 -90867570 + MER30 DNA MER1_type 1 230 0 315 130 145 0 chr13 11007007 11007076 -90866093 - L1MB3 LINE L1 -1 6182 6104 3914 163 9 17 chr13 11007184 11007876 -90865293 - L1MB3 LINE L1 -42 6141 5456 256 263 0 0 chr13 11007924 11008000 -90865169 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 249 83 0 0 chr13 11008519 11008555 -90864614 + (TG)n Simple_repeat Simple_repeat 2 37 0 1800 140 37 0 chr13 11008555 11008826 -90864343 - AluSx SINE Alu -27 285 5 249 281 16 0 chr13 11009251 11009315 -90863854 - L2 LINE L2 -5 3267 3203 2723 124 11 0 chr13 11009635 11010006 -90863163 + THE1C LTR MaLR 1 375 0 1646 209 14 3 chr13 11010183 11010538 -90862631 + L1 LINE L1 4063 4421 -1725 2301 117 0 0 chr13 11010563 11010863 -90862306 - AluSc SINE Alu -9 300 1 1143 184 33 95 chr13 11010901 11011237 -90861932 + LTR52 LTR ERVL 33 347 -74 2492 196 30 46 chr13 11011243 11011959 -90861210 - LTR27 LTR ERV1 0 1736 1 382 200 27 0 chr13 11011959 11012030 -90861139 + LTR52 LTR ERVL 349 421 0 2130 222 80 61 chr13 11012037 11012690 -90860479 + LTR52-int LTR ERVL 12 676 -2880 342 169 31 0 chr13 11012722 11012787 -90860382 - MSTB LTR MaLR 0 426 360 1839 309 18 16 chr13 11012794 11013405 -90859764 + L1PA13 LINE L1 1 612 -6175 5596 226 28 13 chr13 11013642 11015947 -90857222 + L1PA13 LINE L1 1330 3688 -3109 2285 99 0 3 chr13 11015947 11016241 -90856928 - AluY SINE Alu -18 293 1 5596 226 28 13 chr13 11016241 11016304 -90856865 + L1PA13 LINE L1 3688 3749 -3048 315 145 48 0 chr13 11016299 11016361 -90856808 + L1 LINE L1 4239 4303 -2494 * 270 149 0 0 chr13 11016373 11016420 -90856749 + L1 LINE L1 4604 4650 -1496 6012 180 20 1 chr13 11016423 11017592 -90855577 + L1 LINE L1 4309 5500 -1297 6029 134 11 2 chr13 11017592 11018739 -90854430 + L1PA16 LINE L1 5000 6164 -2 1954 161 42 17 chr13 11018764 11019125 -90854044 - MSTB LTR MaLR -56 370 1 1994 138 6 32 chr13 11019169 11019481 -90853688 + AluSx SINE Alu 1 304 -8 186 133 0 0 chr13 11019481 11019511 -90853658 + (GGGGA)n Simple_repeat Simple_repeat 1 30 0 554 165 21 0 chr13 11019518 11019615 -90853554 + LTR52-int LTR ERVL 842 940 -2616 3975 199 64 78 chr13 11019722 11020766 -90852403 + LTR52-int LTR ERVL 1069 2098 -3587 4007 231 63 56 chr13 11020938 11021679 -90851490 + LTR52-int LTR ERVL 2251 3003 -553 1752 216 65 3 chr13 11021679 11022030 -90851139 - MLT1A2 LTR MaLR 0 374 2 4007 231 63 56 chr13 11022030 11022359 -90850810 + LTR52-int LTR ERVL 3003 3328 -228 910 237 11 0 chr13 11022583 11022760 -90850409 + LTR52-int LTR ERVL 3378 3556 0 1229 180 88 24 chr13 11022760 11023055 -90850114 + LTR52 LTR ERVL 1 314 -107 2132 129 3 0 chr13 11023082 11023377 -90849792 + AluSq SINE Alu 1 296 -17 2658 60 52 0 chr13 11023387 11023734 -90849435 + MLT2A2 LTR ERVL 89 453 0 3731 211 68 14 chr13 11023976 11025622 -90847547 + L1MB5 LINE L1 4416 6165 -9 216 326 86 51 chr13 11026359 11026534 -90846635 - L2 LINE L2 0 3272 3092 360 293 92 23 chr13 11027021 11027195 -90845974 + MIR SINE MIR 74 259 -3 2046 209 46 20 chr13 11027322 11027782 -90845387 + MLT1F LTR MaLR 71 542 0 346 253 79 84 chr13 11027782 11027984 -90845185 + MLT1F-int LTR MaLR 1 201 -1170 * 595 291 14 81 chr13 11027979 11028274 -90844895 + MLT1F-int LTR MaLR 327 601 -770 376 340 37 31 chr13 11028459 11028650 -90844519 + MLT1F-int LTR MaLR 692 883 -488 1713 176 28 20 chr13 11028928 11029286 -90843883 + L1MB7 LINE L1 5818 6178 -6 316 307 157 26 chr13 11029756 11030209 -90842960 - L2 LINE L2 -179 3093 2467 213 146 98 0 chr13 11031833 11031874 -90841295 - MIR SINE MIR 0 262 218 994 265 88 96 chr13 11032301 11032392 -90840777 + HAL1 LINE L1 844 934 -1573 2254 80 0 7 chr13 11032392 11032680 -90840489 + AluSg SINE Alu 23 308 -2 994 265 88 96 chr13 11032680 11032793 -90840376 + HAL1 LINE L1 934 1046 -1461 2187 100 3 35 chr13 11032793 11033112 -90840057 + AluSg SINE Alu 2 310 0 994 265 88 96 chr13 11033112 11033822 -90839347 + HAL1 LINE L1 1046 1752 -755 195 225 50 0 chr13 11033949 11033989 -90839180 + L2 LINE L2 3225 3266 -6 203 255 21 0 chr13 11034156 11034203 -90838966 - L2 LINE L2 -44 3228 3181 2566 181 75 22 chr13 11034478 11034970 -90838199 + MLT2B1 LTR ERVL 1 518 -2 488 290 65 55 chr13 11034998 11035308 -90837861 + L2 LINE L2 2543 2855 -459 277 333 35 11 chr13 11035537 11035624 -90837545 + L2 LINE L2 3216 3304 -9 297 314 114 43 chr13 11036462 11036787 -90836382 + L2 LINE L2 2187 2534 -780 189 283 57 0 chr13 11036976 11037029 -90836140 + L2 LINE L2 3257 3312 -1 796 186 79 0 chr13 11037077 11037217 -90835952 + MER58A DNA MER1_type 7 157 0 415 330 58 29 chr13 11037346 11037768 -90835401 - L2 LINE L2 -91 3222 2791 335 264 90 49 chr13 11037785 11037929 -90835240 - MIR SINE MIR -13 249 100 5709 134 15 9 chr13 11038106 11039063 -90834106 + L1PA14 LINE L1 5194 6159 -2 209 299 152 78 chr13 11039126 11039487 -90833682 + L2 LINE L2 2587 2974 -340 23 0 0 0 chr13 11040127 11040150 -90833019 + AT_rich Low_complexity Low_complexity 1 23 0 341 316 9 18 chr13 11040584 11040698 -90832471 + L3 LINE CR1 975 1087 -490 1835 171 0 3 chr13 11041407 11041700 -90831469 + AluSx SINE Alu 1 292 -20 1318 276 80 52 chr13 11041880 11042605 -90830564 + L1ME1 LINE L1 92 836 -5560 402 222 158 26 chr13 11042589 11042606 -90830563 + L1ME1 LINE L1 2125 2138 -4077 * 2131 107 35 0 chr13 11042606 11042896 -90830273 + AluSx SINE Alu 1 300 -12 402 222 158 26 chr13 11042896 11043145 -90830024 + L1ME1 LINE L1 2138 2391 -3824 273 318 11 80 chr13 11043172 11043436 -90829733 + L1PA15 LINE L1 110 355 -7226 8336 237 38 13 chr13 11044452 11044857 -90828312 + L1PA15 LINE L1 2403 2797 -4787 2009 32 119 4 chr13 11044857 11045108 -90828061 + L1PA4 LINE L1 5876 6155 0 8336 237 38 13 chr13 11045108 11047323 -90825846 + L1PA15 LINE L1 2797 5057 -2527 2712 152 2 30 chr13 11047324 11048018 -90825151 + L1PA15 LINE L1 6300 6969 -634 1706 134 51 0 chr13 11047998 11048324 -90824845 + L1PA15 LINE L1 7207 7596 -7 * 710 250 44 29 chr13 11048338 11048924 -90824245 + L1ME1 LINE L1 2387 3024 -3191 22 0 0 0 chr13 11048951 11048973 -90824196 + AT_rich Low_complexity Low_complexity 1 22 0 1211 182 40 16 chr13 11049008 11049255 -90823914 - L1MB2 LINE L1 0 6171 5919 3562 220 18 22 chr13 11049266 11050185 -90822984 + L1ME1 LINE L1 5206 6122 -113 296 208 97 84 chr13 11050362 11050516 -90822653 + MIR SINE MIR 65 220 -42 2261 117 64 19 chr13 11050568 11050927 -90822242 - THE1C LTR MaLR 0 375 1 1963 127 43 0 chr13 11051198 11051498 -90821671 - AluSq SINE Alu 0 313 1 1973 278 162 21 chr13 11051890 11052879 -90820290 + L2 LINE L2 1844 2971 -343 324 281 0 0 chr13 11054688 11054777 -90818392 + L1MEc LINE L1 658 746 -5650 839 183 6 73 chr13 11054783 11054947 -90818222 + AluJo SINE Alu 2 154 -158 1490 189 15 4 chr13 11054948 11055213 -90817956 + AluJb SINE Alu 21 288 -24 1312 205 39 6 chr13 11055222 11055578 -90817591 + L1MEc LINE L1 753 1120 -5276 317 117 40 97 chr13 11055566 11055885 -90817284 + L1MB7 LINE L1 5679 6132 -46 * 2441 67 10 0 chr13 11055885 11056182 -90816987 + AluY SINE Alu 1 300 -11 317 117 40 97 chr13 11056182 11056227 -90816942 + L1MB7 LINE L1 6132 6178 0 391 271 139 20 chr13 11056397 11056548 -90816621 - MIR SINE MIR -52 210 42 3986 75 34 0 chr13 11056548 11057044 -90816125 - LTR10D LTR ERV1 0 513 1 250 330 75 82 chr13 11057073 11057276 -90815893 - L2 LINE L2 -1203 2111 1908 1754 164 3 23 chr13 11057276 11057580 -90815589 + AluJo SINE Alu 1 298 -14 250 330 75 82 chr13 11057580 11057813 -90815356 - L2 LINE L2 -1406 1908 1678 1477 197 166 15 chr13 11058176 11058501 -90814668 + MLT1A2 LTR MaLR 1 374 0 1852 246 45 9 chr13 11058571 11058997 -90814172 + MLT1E2 LTR MaLR 137 577 -49 1338 268 62 18 chr13 11058998 11059876 -90813293 + L1M4c LINE L1 1123 2197 -4366 13077 184 20 10 chr13 11059959 11063723 -90809446 + L1PB1 LINE L1 2587 6382 -5 10167 169 78 81 chr13 11064813 11067124 -90806045 + L1P LINE L1 433 2738 -3408 2131 126 10 0 chr13 11067374 11067683 -90805486 - AluSx SINE Alu 0 312 1 708 260 137 13 chr13 11068735 11069035 -90804134 + L2 LINE L2 2193 2529 -785 248 281 11 34 chr13 11069067 11069156 -90804013 + MER58B DNA MER1_type 255 341 0 360 325 49 18 chr13 11069726 11069889 -90803280 + MIR3 SINE MIR 41 208 0 300 287 139 0 chr13 11070318 11070426 -90802743 + L2 LINE L2 3187 3309 -4 1954 238 155 45 chr13 11072941 11073916 -90799253 + L1MC4 LINE L1 6961 8042 0 552 275 62 38 chr13 11073951 11074191 -90798978 + L2 LINE L2 2804 3049 -223 1717 187 0 0 chr13 11074478 11074762 -90798407 - AluJo SINE Alu -28 284 1 26 0 0 0 chr13 11074762 11074788 -90798381 + AT_rich Low_complexity Low_complexity 1 26 0 357 183 56 0 chr13 11074908 11074979 -90798190 - MIR SINE MIR -129 133 59 414 331 84 81 chr13 11075716 11076601 -90796568 - L3 LINE CR1 -255 1322 436 1923 105 56 0 chr13 11076987 11077254 -90795915 - AluSx SINE Alu -30 282 1 180 219 0 0 chr13 11077936 11077968 -90795201 + L2 LINE L2 3256 3287 -26 225 213 38 38 chr13 11079092 11079172 -90793997 + (AGTAG)n Simple_repeat Simple_repeat 2 81 0 26142 140 15 23 chr13 11080079 11086418 -90786751 - L1PA8 LINE L1 -3 6484 139 706 275 138 73 chr13 11086571 11087077 -90786092 - MLT1E2 LTR MaLR -8 618 80 514 171 34 17 chr13 11087461 11087578 -90785591 + MER4C LTR ERV1 1 119 -346 656 256 73 136 chr13 11087597 11088229 -90784940 + LTR34 LTR ERV1 104 695 -4 192 316 20 31 chr13 11088310 11088408 -90784761 + L2 LINE L2 2995 3091 -181 312 303 0 0 chr13 11089356 11089455 -90783714 - MLT1E2 LTR MaLR -8 618 520 * 609 240 2 40 chr13 11089440 11089663 -90783506 + AluJ SINE Alu 81 260 -52 923 229 19 64 chr13 11089762 11089944 -90783225 - MLT1E2 LTR MaLR -371 255 87 1804 163 14 88 chr13 11089944 11090362 -90782807 - MLT1B LTR MaLR -1 389 3 923 229 19 64 chr13 11090362 11090446 -90782723 - MLT1E2 LTR MaLR -539 87 1 1738 171 31 3 chr13 11090655 11090947 -90782222 - AluSx SINE Alu -12 300 1 497 203 82 88 chr13 11091089 11091271 -90781898 - MER3 DNA MER1_type -5 204 24 1768 102 0 0 chr13 11091371 11091615 -90781554 - THE1C-int LTR MaLR -1336 244 1 2274 141 21 26 chr13 11091615 11091992 -90781177 - THE1C LTR MaLR 0 375 1 2049 126 6 25 chr13 11093529 11093846 -90779323 + AluSx SINE Alu 1 311 -1 544 199 0 89 chr13 11095553 11095699 -90777470 - FLAM_A SINE Alu 0 133 1 28 29 0 0 chr13 11095934 11095969 -90777200 + AT_rich Low_complexity Low_complexity 1 35 0 2529 51 0 0 chr13 11097146 11097438 -90775731 + AluY SINE Alu 1 292 -19 420 299 0 28 chr13 11098406 11098550 -90774619 - MER20 DNA MER1_type -64 155 16 1832 163 56 31 chr13 11098809 11099164 -90774005 + THE1B LTR MaLR 1 364 0 1778 177 7 0 chr13 11099456 11099761 -90773408 + AluSx SINE Alu 1 307 -5 2069 125 6 6 chr13 11099810 11100121 -90773048 + AluY SINE Alu 1 311 0 35 0 0 0 chr13 11100468 11100503 -90772666 + AT_rich Low_complexity Low_complexity 1 35 0 386 96 32 48 chr13 11100504 11100629 -90772540 + (TTATA)n Simple_repeat Simple_repeat 2 124 0 261 169 42 0 chr13 11100631 11100702 -90772467 + (TA)n Simple_repeat Simple_repeat 2 75 0 305 341 11 0 chr13 11100802 11100890 -90772279 + L1MC4 LINE L1 6615 6703 -1339 * 331 250 33 0 chr13 11100832 11100924 -90772245 - L1MC4 LINE L1 -1337 6705 6611 1273 200 86 21 chr13 11101576 11101856 -90771313 - AluJo SINE Alu -14 298 1 455 201 7 43 chr13 11101892 11102013 -90771156 - Charlie5 DNA MER1_type -8 2616 2499 2094 190 28 16 chr13 11102013 11102440 -90770729 + Tigger2a DNA MER2_type 2 433 -1 455 201 7 43 chr13 11102440 11102457 -90770712 - Charlie5 DNA MER1_type -125 2499 2483 436 275 192 0 chr13 11102847 11103040 -90770129 - Charlie8 DNA MER1_type -2131 286 57 230 380 64 64 chr13 11103321 11103682 -90769487 + L2 LINE L2 2873 3233 -39 198 71 0 0 chr13 11103872 11103900 -90769269 + (TG)n Simple_repeat Simple_repeat 2 29 0 914 277 4 11 chr13 11104434 11104694 -90768475 - MIR SINE MIR -2 260 3 237 298 279 0 chr13 11105012 11105116 -90768053 - MIR SINE MIR -41 221 89 781 328 79 48 chr13 11105409 11106414 -90766755 + L2 LINE L2 2233 3272 0 739 188 32 32 chr13 11106481 11106635 -90766534 + MER5A DNA MER1_type 1 154 -35 498 369 5 5 chr13 11106714 11106901 -90766268 + MIR3 SINE MIR 20 206 -2 2183 135 136 131 chr13 11107211 11107820 -90765349 + LTR18B LTR ERVL 3 614 0 911 228 0 0 chr13 11107909 11108089 -90765080 - HERVL18 LTR ERVL -4803 1244 1065 1958 228 32 0 chr13 11108103 11108511 -90764658 + HERVL18 LTR ERVL 68 488 -5559 356 169 14 0 chr13 11108780 11108851 -90764318 + MADE1 DNA Mariner 9 80 0 8080 159 15 29 chr13 11111102 11113123 -90760046 + L1P3 LINE L1 347 2358 -4103 895 284 74 53 chr13 11113235 11113740 -90759429 + L2 LINE L2 2750 3274 -39 646 290 21 16 chr13 11115397 11115583 -90757586 + MIR SINE MIR 10 196 -66 956 292 100 29 chr13 11115817 11116337 -90756832 - L1MC4a LINE L1 -1945 5863 5307 371 306 139 24 chr13 11116340 11116713 -90756456 - L1MC4a LINE L1 -846 5300 4885 707 158 113 15 chr13 11116735 11116868 -90756301 + FAM SINE Alu 20 165 -20 23 68 0 0 chr13 11116869 11116913 -90756256 + AT_rich Low_complexity Low_complexity 1 44 0 311 173 12 0 chr13 11116932 11117013 -90756156 + (TA)n Simple_repeat Simple_repeat 2 83 0 469 345 50 3 chr13 11117013 11117355 -90755814 - L1MC4a LINE L1 -1301 4845 4488 324 0 0 0 chr13 11117575 11117611 -90755558 + (TG)n Simple_repeat Simple_repeat 1 36 0 313 335 76 38 chr13 11117622 11117912 -90755257 - L1MC4a LINE L1 -2476 3670 3370 1595 214 0 4 chr13 11117918 11118199 -90754970 + AluJo SINE Alu 1 280 -32 1288 244 101 7 chr13 11118286 11118700 -90754469 + MLT1D LTR MaLR 51 503 -2 514 217 45 19 chr13 11118779 11118936 -90754233 - HAL1b LINE L1 -849 499 339 2555 135 31 26 chr13 11119681 11120214 -90752955 + HUERS-P1 LTR ERV1 3541 4277 -1986 * 5638 131 55 19 chr13 11120205 11121782 -90751387 + HUERS-P1 LTR ERV1 5307 7168 -648 26 0 0 0 chr13 11121949 11121975 -90751194 + AT_rich Low_complexity Low_complexity 1 26 0 260 313 120 88 chr13 11122206 11122252 -90750917 - L2 LINE L2 0 3272 3229 1580 191 94 31 chr13 11122252 11122603 -90750566 + MER93b LTR ERV1 1 373 0 260 313 120 88 chr13 11122603 11122748 -90750421 - L2 LINE L2 -43 3229 3075 551 89 13 0 chr13 11123268 11123347 -90749822 + MADE1 DNA Mariner 1 80 0 231 243 57 121 chr13 11123498 11123638 -90749531 - MIR SINE MIR -66 196 66 242 263 158 21 chr13 11123885 11123980 -90749189 + MIR SINE MIR 86 193 -69 220 294 22 66 chr13 11124562 11124698 -90748471 + MIR SINE MIR 91 220 -42 2333 112 0 0 chr13 11124792 11125097 -90748072 + AluSx SINE Alu 1 305 -7 2090 132 0 14 chr13 11126830 11127126 -90746043 + AluSx SINE Alu 1 292 -20 453 281 60 10 chr13 11127286 11127485 -90745684 - MLT1J2 LTR MaLR -205 245 37 3090 105 28 0 chr13 11127485 11127988 -90745181 + L1P LINE L1 4816 5332 -814 3443 211 29 17 chr13 11128094 11128982 -90744187 + L1P LINE L1 4499 5397 -749 * 5739 118 15 3 chr13 11128981 11130511 -90742658 + L1PA11 LINE L1 4360 5907 -267 2534 54 0 0 chr13 11130513 11130811 -90742358 + AluSg SINE Alu 1 298 -12 457 213 53 73 chr13 11131004 11131154 -90742015 - MER89 LTR ERV1 0 559 413 271 284 107 52 chr13 11131162 11131472 -90741697 + MER50 LTR ERV1 10 336 -398 277 208 0 0 chr13 11131714 11131767 -90741402 - MLT1H1 LTR MaLR -161 394 342 2511 78 0 0 chr13 11131767 11132076 -90741093 + AluY SINE Alu 1 309 -2 1766 76 61 11 chr13 11132076 11132338 -90740831 + L1PA11 LINE L1 5900 6174 0 4673 113 9 8 chr13 11132338 11133107 -90740062 + L1PA16 LINE L1 5388 6157 -9 212 331 107 0 chr13 11133634 11133755 -90739414 - MIR SINE MIR -6 256 123 2106 123 0 0 chr13 11135015 11135300 -90737869 - AluSg SINE Alu -21 289 5 2025 231 66 42 chr13 11135627 11136016 -90737153 + MLT1E LTR MaLR 1 410 -183 753 228 0 6 chr13 11136016 11136178 -90736991 + FRAM SINE Alu 1 161 -5 2025 231 66 42 chr13 11136178 11136365 -90736804 + MLT1E LTR MaLR 410 591 -2 259 274 81 65 chr13 11136409 11136533 -90736636 + L2 LINE L2 3139 3264 -8 198 103 0 0 chr13 11136543 11136572 -90736597 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 204 232 18 36 chr13 11137055 11137111 -90736058 - MIR SINE MIR -98 164 110 2223 113 7 7 chr13 11137812 11138121 -90735048 - AluSx SINE Alu -3 309 1 703 267 24 6 chr13 11138157 11138322 -90734847 + MER5A DNA MER1_type 18 185 -4 23 92 0 0 chr13 11138341 11138406 -90734763 + AT_rich Low_complexity Low_complexity 1 65 0 2160 69 0 15 chr13 11138407 11138681 -90734488 + AluY SINE Alu 28 297 -14 183 306 0 32 chr13 11138762 11138824 -90734345 + L2 LINE L2 3247 3306 -7 1048 141 11 16 chr13 11140426 11140617 -90732552 + L1MA5A LINE L1 6105 6294 -3 1249 211 0 0 chr13 11140618 11140836 -90732333 + AluJo SINE Alu 76 293 -19 1549 211 87 6 chr13 11140841 11141382 -90731787 + Zaphod DNA AcHobo 748 1332 -2699 770 210 68 18 chr13 11141414 11141633 -90731536 + Zaphod DNA AcHobo 3783 4012 -19 243 225 28 14 chr13 11141803 11141874 -90731295 + L1ME4a LINE L1 5971 6042 -79 1810 166 3 13 chr13 11143132 11143445 -90729724 - AluJo SINE Alu -2 310 1 2077 152 11 6 chr13 11143885 11144247 -90728922 + MLT2D LTR ERVL 1 364 -50 245 210 16 0 chr13 11144251 11144313 -90728856 + (TA)n Simple_repeat Simple_repeat 1 63 0 199 303 34 67 chr13 11144519 11144638 -90728531 + MIR SINE MIR 31 145 -117 203 232 14 43 chr13 11145320 11145389 -90727780 - L2 LINE L2 -23 3290 3224 1263 294 151 17 chr13 11145599 11146296 -90726873 - L2 LINE L2 -837 2477 1688 261 278 0 14 chr13 11146302 11146374 -90726795 + (CA)n Simple_repeat Simple_repeat 1 71 0 2509 77 0 0 chr13 11146504 11146815 -90726354 - AluY SINE Alu 0 311 1 194 247 0 27 chr13 11146886 11146959 -90726210 - L2 LINE L2 -1629 1685 1615 223 237 25 17 chr13 11147742 11147860 -90725309 + (TA)n Simple_repeat Simple_repeat 1 119 0 653 287 128 13 chr13 11147873 11148270 -90724899 + L1ME4a LINE L1 5603 6045 -76 1033 176 44 24 chr13 11148429 11148679 -90724490 - L1MDa LINE L1 -4713 1827 1573 26 0 0 0 chr13 11148895 11148921 -90724248 + GC_rich Low_complexity Low_complexity 1 26 0 221 214 29 0 chr13 11149596 11149666 -90723503 + (TA)n Simple_repeat Simple_repeat 1 72 0 758 287 127 2 chr13 11149679 11150073 -90723096 + L1ME4a LINE L1 5603 6045 -76 2078 167 78 37 chr13 11150223 11150812 -90722357 - L1MDa LINE L1 -4705 1835 1220 3931 155 60 8 chr13 11150819 11151587 -90721582 - L1MB7 LINE L1 -16 6168 5361 1678 201 76 44 chr13 11151568 11151837 -90721332 - L1MDa LINE L1 -5330 1210 951 * 2112 170 59 7 chr13 11151837 11152242 -90720927 + MSTB LTR MaLR 1 426 0 1678 201 76 44 chr13 11152242 11152697 -90720472 - L1MDa LINE L1 -5589 951 143 33 43 0 0 chr13 11152758 11152805 -90720364 + AT_rich Low_complexity Low_complexity 1 47 0 1898 179 9 9 chr13 11153960 11154301 -90718868 + MER2 DNA MER2_type 1 341 -3 1850 132 3 13 chr13 11155480 11155784 -90717385 + L1PB1 LINE L1 5851 6151 0 223 287 225 29 chr13 11156536 11156745 -90716424 + MIR SINE MIR 1 250 -12 286 204 151 11 chr13 11157664 11157757 -90715412 - L1MB7 LINE L1 -1312 4834 4729 239 293 0 0 chr13 11157804 11157886 -90715283 + L1MC4a LINE L1 4906 4987 -1159 329 280 99 71 chr13 11157923 11158179 -90714990 + L1MC4a LINE L1 5008 5282 -864 2123 118 0 0 chr13 11158179 11158466 -90714703 - AluSq SINE Alu -26 287 1 329 280 99 71 chr13 11158466 11158592 -90714577 + L1MC4a LINE L1 5282 5403 -743 379 285 163 19 chr13 11158593 11159004 -90714165 + L1MC4a LINE L1 5443 5912 -1896 338 328 25 37 chr13 11159226 11159467 -90713702 + L1MC4a LINE L1 5812 6049 -1759 2037 154 0 0 chr13 11159878 11160176 -90712993 - AluSx SINE Alu -14 298 1 357 223 11 0 chr13 11160211 11160305 -90712864 + L1MB2 LINE L1 3958 4052 -2094 * 816 136 14 0 chr13 11160299 11160446 -90712723 + L1MB2 LINE L1 4457 4605 -1541 * 938 188 110 0 chr13 11160443 11160715 -90712454 - L1 LINE L1 -1682 4464 4163 2392 148 12 7 chr13 11160715 11161121 -90712048 + Tigger1 DNA MER2_type 1 408 -2010 4617 165 44 11 chr13 11161121 11162236 -90710933 + L1MB2 LINE L1 5009 6168 -3 546 380 5 9 chr13 11163113 11163334 -90709835 - L3 LINE CR1 -25 1552 1333 240 333 48 0 chr13 11164644 11164749 -90708420 + MIR SINE MIR 103 212 -50 744 174 8 0 chr13 11164844 11164976 -90708193 + FLAM_C SINE Alu 1 133 0 306 50 0 0 chr13 11165387 11165427 -90707742 + (CA)n Simple_repeat Simple_repeat 1 40 0 5079 123 27 25 chr13 11165789 11166848 -90706321 + L1PB4 LINE L1 5068 6137 -19 256 263 51 17 chr13 11166763 11166881 -90706288 + L1MA4A LINE L1 6182 6303 0 * 22 35 0 0 chr13 11167293 11167322 -90705847 + AT_rich Low_complexity Low_complexity 1 29 0 955 195 42 0 chr13 11167366 11167602 -90705567 + L1MA4 LINE L1 6053 6298 -2 597 235 128 11 chr13 11168130 11168317 -90704852 + MER3 DNA MER1_type 1 209 0 325 276 11 11 chr13 11168336 11168423 -90704746 + L2 LINE L2 3184 3270 -2 444 316 48 39 chr13 11168429 11168660 -90704509 - MIR SINE MIR -22 240 8 2114 238 100 27 chr13 11168733 11169694 -90703475 - L1ME3A LINE L1 -4 6149 5122 1773 167 88 24 chr13 11169695 11170151 -90703018 + Charlie1 DNA MER1_type 2012 2496 -265 21 36 0 0 chr13 11170151 11170179 -90702990 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr13 11170200 11170250 -90702919 + AT_rich Low_complexity Low_complexity 1 50 0 548 157 37 0 chr13 11170443 11170551 -90702618 + Charlie1 DNA MER1_type 2650 2761 0 226 271 0 31 chr13 11170551 11170647 -90702522 - L1ME3A LINE L1 -3562 2567 2475 391 262 0 0 chr13 11170673 11170780 -90702389 - L1ME3A LINE L1 -3752 2377 2271 604 297 54 83 chr13 11170780 11171188 -90701981 - L1ME3A LINE L1 -4932 1187 792 1591 189 29 3 chr13 11171192 11171535 -90701634 - L1MB5 LINE L1 -138 6036 5685 2587 101 6 8 chr13 11171564 11171929 -90701240 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 11173108 11173130 -90700039 + AT_rich Low_complexity Low_complexity 1 22 0 2310 89 7 0 chr13 11173301 11173592 -90699577 - AluSc SINE Alu -16 293 1 577 174 99 0 chr13 11174086 11174207 -90698962 - LTR12 LTR ERV1 -234 480 348 301 180 0 0 chr13 11174208 11174269 -90698900 - LTR30 LTR ERV1 -110 612 552 1172 111 0 137 chr13 11174269 11174539 -90698630 - LTR12 LTR ERV1 -429 285 53 240 250 0 0 chr13 11174539 11174591 -90698578 - LTR30 LTR ERV1 -670 52 1 1740 160 28 7 chr13 11175648 11175935 -90697234 + AluJo SINE Alu 1 293 -19 1164 216 107 88 chr13 11176235 11176880 -90696289 + L1ME3 LINE L1 5499 6155 -7 2100 114 3 0 chr13 11176890 11177179 -90695990 + AluSp SINE Alu 19 308 -5 263 289 50 25 chr13 11177890 11178011 -90695158 + MIR SINE MIR 65 188 -74 2056 158 45 5 chr13 11178117 11178496 -90694673 + MLT2C2 LTR ERVL 1 394 -70 369 0 0 0 chr13 11178531 11178572 -90694597 + (TG)n Simple_repeat Simple_repeat 2 42 0 7424 156 31 13 chr13 11178686 11180165 -90693004 - L1P LINE L1 -2519 3627 2122 3748 131 4 5 chr13 11180166 11181006 -90692163 - L1MA3 LINE L1 -474 7250 6411 677 173 12 87 chr13 11181725 11181898 -90691271 + MLT1B LTR MaLR 1 160 -214 223 239 0 0 chr13 11181899 11181945 -90691224 + G-rich Low_complexity Low_complexity 3 48 0 754 191 16 57 chr13 11182026 11182220 -90690949 + MLT1B LTR MaLR 205 390 0 1974 95 4 4 chr13 11182996 11183259 -90689910 - AluSc SINE Alu -46 263 1 9510 130 1 30 chr13 11183260 11184661 -90688508 - L1P4 LINE L1 -491 5683 4363 325 44 0 0 chr13 11184661 11184706 -90688463 - L1PA3 LINE L1 -3 6152 6108 9510 130 1 30 chr13 11184706 11185348 -90687821 - L1P4 LINE L1 -1811 4363 3704 18055 175 52 23 chr13 11185448 11191192 -90681977 - L1MA3 LINE L1 -1413 6152 568 2131 116 142 16 chr13 11191192 11191572 -90681597 + MSTA LTR MaLR 1 428 0 18055 175 52 23 chr13 11191572 11192137 -90681032 - L1MA3 LINE L1 -6997 568 21 2345 233 89 10 chr13 11192137 11193017 -90680152 - L1MDb LINE L1 -4954 1452 458 1326 273 123 21 chr13 11193010 11193570 -90679599 - L1MDb LINE L1 -5776 633 17 * 675 299 43 4 chr13 11194837 11195068 -90678101 + MIR SINE MIR 15 254 -8 27 29 0 0 chr13 11196002 11196036 -90677133 + AT_rich Low_complexity Low_complexity 1 34 0 1332 178 12 17 chr13 11196557 11196798 -90676371 + AluJo SINE Alu 49 288 -24 4085 168 33 48 chr13 11196909 11198686 -90674483 + L1MA3 LINE L1 4558 6298 -7 211 324 89 49 chr13 11198702 11198927 -90674242 - L2 LINE L2 -210 3062 2829 253 336 85 47 chr13 11198933 11199251 -90673918 - L2 LINE L2 -1 3271 2942 200 296 136 12 chr13 11200190 11200271 -90672898 + MIR SINE MIR 16 106 -102 420 208 0 0 chr13 11200404 11200476 -90672693 - MER2 DNA MER2_type -10 335 264 1766 170 88 25 chr13 11200524 11200877 -90672292 + THE1C LTR MaLR 1 375 0 2171 29 4 0 chr13 11200910 11201155 -90672014 - L1PA4 LINE L1 -6 6149 5904 405 176 0 0 chr13 11201156 11201230 -90671939 + MER2 DNA MER2_type 108 181 -164 189 270 40 40 chr13 11201449 11201523 -90671646 + MIR SINE MIR 79 152 -110 1118 144 12 0 chr13 11201535 11201702 -90671467 - MER2 DNA MER2_type -175 170 2 267 202 136 42 chr13 11201857 11202005 -90671164 + MLT1H LTR MaLR 249 592 -1 188 262 149 28 chr13 11202005 11202112 -90671057 + MIR SINE MIR 114 233 -29 207 232 179 71 chr13 11202296 11202313 -90670856 - L2 LINE L2 -1 3271 3257 2356 166 60 20 chr13 11202313 11202344 -90670825 - MLT2C2 LTR ERVL 0 464 436 405 0 0 0 chr13 11202344 11202389 -90670780 + (CA)n Simple_repeat Simple_repeat 2 46 0 2356 166 60 20 chr13 11202389 11202803 -90670366 - MLT2C2 LTR ERVL -28 436 1 207 232 179 71 chr13 11202803 11202897 -90670272 - L2 LINE L2 -15 3257 3148 257 289 50 25 chr13 11202909 11203030 -90670139 - MIR SINE MIR -74 188 65 2303 104 3 0 chr13 11203741 11204048 -90669121 - AluSq SINE Alu -5 308 1 416 100 0 0 chr13 11204049 11204109 -90669060 - L1MA5A LINE L1 -171 6126 6067 544 184 184 28 chr13 11204110 11204327 -90668842 - Zaphod DNA AcHobo -3275 756 506 968 244 44 0 chr13 11204328 11204533 -90668636 + MER58A DNA MER1_type 2 215 -9 604 250 8 0 chr13 11204542 11204674 -90668495 - Zaphod DNA AcHobo -3518 513 381 526 302 93 24 chr13 11204706 11204954 -90668215 - Zaphod DNA AcHobo -3716 315 51 192 209 47 0 chr13 11205489 11205532 -90667637 + L3 LINE CR1 1375 1419 -158 256 400 24 0 chr13 11205727 11205852 -90667317 - MIR SINE MIR -128 134 7 418 218 73 32 chr13 11207296 11207420 -90665749 - MER112 DNA MER1_type -126 134 6 264 317 17 33 chr13 11207424 11207544 -90665625 - L1ME LINE L1 -513 5657 5540 227 252 65 9 chr13 11207964 11208071 -90665098 - Charlie8 DNA MER1_type -1926 491 379 486 249 42 114 chr13 11208147 11208384 -90664785 - Charlie8 DNA MER1_type -2196 221 2 260 324 0 0 chr13 11208547 11208615 -90664554 + L2 LINE L2 3205 3272 0 518 258 18 30 chr13 11209583 11209750 -90663419 - MIR SINE MIR -4 258 94 182 330 143 44 chr13 11209827 11210009 -90663160 - L2 LINE L2 -68 3204 3005 1208 173 0 0 chr13 11210010 11210201 -90662968 + AluJb SINE Alu 121 311 -1 282 301 7 44 chr13 11210227 11210363 -90662806 - L2 LINE L2 -300 2972 2842 21 0 0 0 chr13 11211691 11211712 -90661457 + AT_rich Low_complexity Low_complexity 1 21 0 332 249 164 73 chr13 11214234 11214563 -90658606 - L1MC4a LINE L1 -1636 6172 5814 406 223 230 14 chr13 11214573 11214712 -90658457 - L1MC4a LINE L1 -2057 5751 5583 608 211 8 8 chr13 11214818 11214941 -90658228 + MER94 DNA DNA 2 124 -10 636 125 19 10 chr13 11215070 11215174 -90657995 + L1MB3 LINE L1 6075 6179 -4 1397 238 11 26 chr13 11215195 11215544 -90657625 + L1ME1 LINE L1 5823 6166 0 4491 146 21 34 chr13 11216207 11217023 -90656146 + L1MB3 LINE L1 5370 6174 -9 1413 208 48 10 chr13 11217288 11217608 -90655561 + MER33 DNA MER1_type 1 323 -1 698 146 177 0 chr13 11217615 11217745 -90655424 + MER5A DNA MER1_type 34 186 -3 884 226 123 39 chr13 11218638 11218948 -90654221 - MER46C DNA MER2_type -1 337 2 218 265 29 59 chr13 11219308 11219410 -90653759 + MIR SINE MIR 164 262 0 21 0 0 0 chr13 11219529 11219550 -90653619 + AT_rich Low_complexity Low_complexity 1 21 0 2000 174 34 8 chr13 11219611 11219968 -90653201 + MLT2D LTR ERVL 1 366 -48 907 223 41 0 chr13 11220734 11220931 -90652238 - MER3 DNA MER1_type 0 209 5 329 296 79 17 chr13 11220993 11221131 -90652038 - MIR SINE MIR -62 146 8 208 294 49 10 chr13 11221322 11221424 -90651745 - L2 LINE L2 -1397 1917 1812 328 236 176 0 chr13 11221562 11221710 -90651459 - Charlie8 DNA MER1_type -2141 276 103 501 124 82 10 chr13 11221753 11221850 -90651319 + L1MB3 LINE L1 6080 6183 0 470 273 8 0 chr13 11221950 11222071 -90651098 + MER5B DNA MER1_type 51 172 -6 282 279 76 0 chr13 11223858 11223937 -90649232 - Charlie8 DNA MER1_type -2314 103 19 217 149 68 108 chr13 11224070 11224144 -90649025 - L2 LINE L2 -2 3311 3241 2418 86 186 121 chr13 11224325 11225002 -90648167 + LTR12 LTR ERV1 1 2313 -125 5001 116 9 8 chr13 11225475 11226244 -90646925 - L1PA16 LINE L1 -9 6157 5388 1901 76 61 11 chr13 11226244 11226506 -90646663 - L1PA11 LINE L1 0 6174 5900 2560 68 0 0 chr13 11226506 11226813 -90646356 - AluY SINE Alu -2 309 3 21 0 0 0 chr13 11226829 11226850 -90646319 + AT_rich Low_complexity Low_complexity 1 21 0 3709 152 47 29 chr13 11227871 11228557 -90644612 - L1MB3 LINE L1 0 6183 5486 1366 206 204 0 chr13 11228561 11228944 -90644225 - L1PA16 LINE L1 -924 5222 4762 275 138 12 62 chr13 11228934 11229014 -90644155 - L1M4c LINE L1 -4093 2291 2216 * 298 354 24 0 chr13 11230237 11230364 -90642805 + L2 LINE L2 2920 3049 -223 2075 101 66 0 chr13 11230776 11231064 -90642105 - AluSg SINE Alu -3 307 1 494 239 122 20 chr13 11231632 11231829 -90641340 + L3 LINE CR1 1212 1428 -149 964 251 27 5 chr13 11232062 11232285 -90640884 - MIR SINE MIR -7 255 28 187 253 60 60 chr13 11232919 11233002 -90640167 - L3 LINE CR1 -1 1576 1494 2472 73 0 7 chr13 11233967 11234270 -90638899 + AluSp SINE Alu 1 301 -12 1996 243 100 18 chr13 11236063 11236945 -90636224 + L2 LINE L2 2327 3305 -8 304 348 22 0 chr13 11237152 11237241 -90635928 + MIR SINE MIR 49 139 -123 4242 171 39 54 chr13 11237869 11238923 -90634246 - L1MB3 LINE L1 -3 6180 5379 * 4410 177 67 49 chr13 11238915 11239945 -90633224 - L1MD2 LINE L1 -229 6130 5121 1679 187 3 3 chr13 11239945 11240229 -90632940 - AluJo SINE Alu -23 289 6 4410 177 67 49 chr13 11240229 11240341 -90632828 - L1MD2 LINE L1 -1238 5121 5013 1889 135 43 0 chr13 11240341 11240622 -90632547 + AluSx SINE Alu 1 293 -19 4410 177 67 49 chr13 11240622 11240906 -90632263 - L1MD2 LINE L1 -1346 5013 4674 * 4669 133 35 19 chr13 11240902 11241702 -90631467 + L1PB4 LINE L1 5344 6156 0 261 224 164 45 chr13 11241973 11242107 -90631062 + L1ME4a LINE L1 5955 6104 -17 6055 99 31 0 chr13 11243397 11244331 -90628838 + L1PA10 LINE L1 5179 6136 -32 334 367 0 0 chr13 11244431 11244600 -90628569 + G-rich Low_complexity Low_complexity 1 169 0 27 0 0 0 chr13 11245424 11245451 -90627718 + AT_rich Low_complexity Low_complexity 1 27 0 2161 79 9 88 chr13 11245494 11245822 -90627347 - AluY SINE Alu -9 302 1 316 293 0 0 chr13 11245937 11246012 -90627157 - L2 LINE L2 -4 3309 3235 250 202 222 40 chr13 11246107 11246206 -90626963 + MLT1K LTR MaLR 128 244 -344 342 194 48 0 chr13 11247653 11247715 -90625454 - L2 LINE L2 0 3272 3208 336 197 0 45 chr13 11247776 11247842 -90625327 - L2 LINE L2 0 3272 3210 334 209 0 45 chr13 11247901 11247968 -90625201 - L2 LINE L2 0 3272 3209 1522 254 129 17 chr13 11248192 11248672 -90624497 + MLT1F LTR MaLR 1 534 -8 2113 83 58 0 chr13 11248716 11248993 -90624176 + AluSg1 SINE Alu 1 293 -16 336 299 46 69 chr13 11249620 11249794 -90623375 - L2 LINE L2 -247 3066 2897 673 287 11 0 chr13 11249851 11250032 -90623137 - L1MEd LINE L1 -4702 1861 1679 376 166 74 23 chr13 11250067 11250175 -90622994 - L1MEd LINE L1 -4886 1486 1287 1576 146 59 31 chr13 11250180 11250467 -90622702 + MSTB1 LTR MaLR 2 296 -136 2222 99 42 19 chr13 11250567 11250880 -90622289 + L1PA10 LINE L1 5833 6152 -16 230 237 0 0 chr13 11250887 11250933 -90622236 + A-rich Low_complexity Low_complexity 1 49 -10 2906 126 32 2 chr13 11250933 11251376 -90621793 + L1MA2 LINE L1 5849 6304 0 230 237 0 0 chr13 11251376 11251388 -90621781 + A-rich Low_complexity Low_complexity 48 59 0 3065 75 10 0 chr13 11251390 11251790 -90621379 - L1PA4 LINE L1 -1802 4344 3941 * 6403 28 1 0 chr13 11251779 11252529 -90620640 + L1PA4 LINE L1 4352 5102 -1044 5349 42 0 0 chr13 11252529 11253128 -90620041 + L1PA4 LINE L1 5551 6153 -2 1388 161 80 0 chr13 11253130 11253416 -90619753 + L1MD2 LINE L1 1570 1878 -4662 * 8867 41 0 0 chr13 11253409 11254480 -90618689 - L1PA4 LINE L1 -3550 2596 1526 24113 33 4 2 chr13 11254480 11258010 -90615159 + L1PA4 LINE L1 2616 6155 0 807 176 6 6 chr13 11258018 11258183 -90614986 + L1MD2 LINE L1 1859 2023 -4517 5905 215 67 61 chr13 11258185 11260423 -90612746 + L1MD2 LINE L1 3779 6002 -751 239 170 0 57 chr13 11260423 11260476 -90612693 + MLT1B LTR MaLR 1 50 -340 * 348 143 79 0 chr13 11260473 11260536 -90612633 + MLT1C LTR MaLR 400 467 0 * 5905 215 67 61 chr13 11260536 11260947 -90612222 + L1MD2 LINE L1 6062 6469 -284 222 37 0 0 chr13 11260947 11260974 -90612195 + (CA)n Simple_repeat Simple_repeat 2 28 0 5905 215 67 61 chr13 11260974 11261045 -90612124 + L1MD2 LINE L1 6469 6538 -215 2182 158 38 28 chr13 11261045 11261083 -90612086 - MER57A LTR ERV1 0 403 367 2021 147 0 25 chr13 11261083 11261402 -90611767 + AluSx SINE Alu 1 311 -1 2182 158 38 28 chr13 11261402 11261562 -90611607 - MER57A LTR ERV1 -36 367 210 2407 77 0 3 chr13 11261562 11261862 -90611307 + AluY SINE Alu 2 300 -11 2182 158 38 28 chr13 11261862 11262061 -90611108 - MER57A LTR ERV1 -193 210 1 5905 215 67 61 chr13 11262061 11262181 -90610988 + L1MD2 LINE L1 6538 6744 -9 582 267 0 7 chr13 11263019 11263154 -90610015 + MER45A DNA AcHobo 45 178 0 9473 36 4 0 chr13 11263211 11265055 -90608114 - L1PA4 LINE L1 0 6155 4305 805 266 15 0 chr13 11265334 11265537 -90607632 + MER3 DNA MER1_type 4 209 0 1359 287 121 24 chr13 11266310 11267217 -90605952 + L2 LINE L2 2320 3313 0 35 0 0 0 chr13 11267545 11267580 -90605589 + AT_rich Low_complexity Low_complexity 1 35 0 186 310 69 0 chr13 11267709 11267767 -90605402 + L2 LINE L2 3175 3236 -36 1120 126 20 40 chr13 11268562 11268761 -90604408 + L1MA5A LINE L1 6098 6292 -5 2169 124 3 3 chr13 11268947 11269253 -90603916 - AluSc SINE Alu -3 306 1 21 82 0 0 chr13 11271373 11271422 -90601747 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr13 11271866 11271893 -90601276 + AT_rich Low_complexity Low_complexity 1 27 0 282 292 15 54 chr13 11273435 11273565 -90599604 + MER5A DNA MER1_type 1 125 -64 291 179 0 0 chr13 11273627 11273694 -90599475 + (CA)n Simple_repeat Simple_repeat 2 68 0 1671 203 7 0 chr13 11274750 11275036 -90598133 + AluJo SINE Alu 1 288 -24 42 20 0 0 chr13 11275037 11275086 -90598083 + AT_rich Low_complexity Low_complexity 1 49 0 374 289 159 0 chr13 11275900 11276108 -90597061 - L1ME4a LINE L1 -199 5922 5682 180 0 0 0 chr13 11276109 11276129 -90597040 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 1966 122 3 14 chr13 11276129 11276416 -90596753 - AluSx SINE Alu -28 284 1 234 315 0 0 chr13 11277029 11277102 -90596067 - L2 LINE L2 -11 3302 3230 197 273 100 109 chr13 11277177 11277397 -90595772 - MIR SINE MIR -16 246 29 211 301 82 0 chr13 11279552 11279625 -90593544 + MIR SINE MIR 105 183 -79 205 349 12 23 chr13 11280799 11280885 -90592284 + L2 LINE L2 3228 3312 -1 619 244 161 0 chr13 11282536 11282716 -90590453 + Charlie2 DNA MER1_type 78 286 -2496 6101 65 5 13 chr13 11282721 11283488 -90589681 + L1PA10 LINE L1 5407 6167 -1 658 260 136 18 chr13 11283610 11283941 -90589228 - LTR33A LTR ERVL -2 521 152 550 257 79 19 chr13 11283953 11284167 -90589002 + Charlie2 DNA MER1_type 2636 2862 0 323 349 54 7 chr13 11284287 11284436 -90588733 - MIR SINE MIR -77 185 30 432 284 209 0 chr13 11284509 11284657 -90588512 - MER5A DNA MER1_type -1 188 10 231 163 12 116 chr13 11284685 11284771 -90588398 - Charlie7 DNA MER1_type -44 2568 2492 * 1101 281 124 25 chr13 11284756 11285273 -90587896 - Charlie7 DNA MER1_type -1927 685 118 544 110 9 9 chr13 11285715 11285824 -90587345 + (TATG)n Simple_repeat Simple_repeat 3 111 0 228 147 0 0 chr13 11285824 11285858 -90587311 - Alu SINE Alu -17 285 252 1771 142 67 0 chr13 11285876 11286143 -90587026 - AluSx SINE Alu -27 285 1 801 234 270 9 chr13 11286321 11286847 -90586322 - L2 LINE L2 -12 3301 2641 319 259 30 82 chr13 11286962 11287097 -90586072 + MER69A DNA AcHobo 28 155 -22 294 388 43 0 chr13 11287146 11287262 -90585907 + L2 LINE L2 3137 3257 -15 317 303 104 19 chr13 11288844 11289055 -90584114 - L2 LINE L2 -216 3056 2828 262 262 0 48 chr13 11289562 11289646 -90583523 - L2 LINE L2 0 3272 3193 1004 186 26 26 chr13 11289757 11289950 -90583219 - MER20 DNA MER1_type -2 217 25 250 295 95 53 chr13 11290522 11290617 -90582552 + L2 LINE L2 3198 3296 -17 217 314 105 24 chr13 11291721 11291845 -90581324 - L2 LINE L2 -2 3311 3178 198 0 0 0 chr13 11292658 11292680 -90580489 + (TA)n Simple_repeat Simple_repeat 2 23 0 381 235 197 33 chr13 11292799 11292982 -90580187 - MIR SINE MIR -21 241 29 481 291 8 31 chr13 11293319 11293446 -90579723 - L2 LINE L2 -1 3312 3189 1385 206 45 24 chr13 11293486 11293773 -90579396 + AluJo SINE Alu 1 293 -19 25 0 0 0 chr13 11293785 11293810 -90579359 + AT_rich Low_complexity Low_complexity 1 25 0 1670 147 7 18 chr13 11293819 11294104 -90579065 + AluSx SINE Alu 1 282 -30 225 111 0 44 chr13 11294126 11294171 -90578998 + (CA)n Simple_repeat Simple_repeat 2 44 0 228 135 0 0 chr13 11294320 11294357 -90578812 + (CA)n Simple_repeat Simple_repeat 2 38 0 182 382 56 0 chr13 11295781 11295925 -90577244 + MIR SINE MIR 111 262 0 2389 84 0 3 chr13 11296774 11297082 -90576087 + AluSc SINE Alu 1 307 -2 207 289 13 0 chr13 11297318 11297394 -90575775 + (CCA)n Simple_repeat Simple_repeat 2 78 0 255 157 20 0 chr13 11298203 11298254 -90574915 + MER91B DNA MER1_type 79 130 -60 466 200 33 0 chr13 11298276 11298366 -90574803 + MER91B DNA MER1_type 97 189 -1 334 176 0 15 chr13 11299665 11299733 -90573436 + MER116 DNA Mariner 1 67 -13 201 255 191 32 chr13 11301507 11301601 -90571568 - MER5A DNA MER1_type -42 147 39 341 184 72 72 chr13 11301703 11301828 -90571341 - MIR SINE MIR -54 208 84 1067 184 165 4 chr13 11302432 11302704 -90570465 + MER33 DNA MER1_type 4 319 -5 8864 237 55 53 chr13 11303071 11306694 -90566475 - L1MB7 LINE L1 0 6682 2721 2104 128 0 22 chr13 11306694 11307007 -90566162 + AluSx SINE Alu 2 307 -5 8864 237 55 53 chr13 11307007 11309284 -90563885 - L1MB7 LINE L1 -3961 2721 451 1487 273 5 11 chr13 11309296 11309433 -90563736 - L1MB7 LINE L1 -6142 400 264 2055 136 0 20 chr13 11309433 11309735 -90563434 - AluSx SINE Alu -16 296 1 1487 273 5 11 chr13 11309735 11309978 -90563191 - L1MB7 LINE L1 -6278 264 22 1837 146 27 6 chr13 11309996 11310326 -90562843 - MER96B DNA MER1_type? -80 337 1 7034 108 26 18 chr13 11310329 11311391 -90561778 + MER11C LTR ERVK 1 1071 0 188 169 0 51 chr13 11312681 11312740 -90560429 + (TTTA)n Simple_repeat Simple_repeat 1 56 0 680 280 82 20 chr13 11313985 11314289 -90558880 + L2 LINE L2 2984 3306 -7 2579 206 22 64 chr13 11314298 11314905 -90558264 - MER67B LTR ERV1 -4 657 81 2471 114 22 8 chr13 11314905 11315273 -90557896 + THE1C LTR MaLR 3 375 0 2579 206 22 64 chr13 11315273 11315351 -90557818 - MER67B LTR ERV1 -580 81 1 566 104 0 0 chr13 11315352 11315429 -90557740 - MER31B LTR ERV1 -387 79 3 312 197 0 179 chr13 11316194 11316311 -90556858 - MER69 DNA AcHobo 0 2526 2431 453 225 18 9 chr13 11316312 11316423 -90556746 - MER69 DNA AcHobo -2414 112 1 427 193 0 107 chr13 11317248 11317388 -90555781 + MER5B DNA MER1_type 1 125 -53 4127 129 33 14 chr13 11318917 11319268 -90553901 - L1MB3 LINE L1 -1 6182 5839 2173 114 0 29 chr13 11319268 11319583 -90553586 - AluSp SINE Alu -7 306 1 4127 129 33 14 chr13 11319583 11319923 -90553246 - L1MB3 LINE L1 -344 5839 5478 212 294 81 59 chr13 11319965 11320101 -90553068 + MER5A DNA MER1_type 1 139 -50 378 0 0 0 chr13 11320101 11320143 -90553026 + (TG)n Simple_repeat Simple_repeat 1 42 0 1791 144 33 0 chr13 11320145 11320415 -90552754 - AluJo SINE Alu -33 279 1 937 236 68 84 chr13 11321169 11321623 -90551546 - MER39 LTR ERV1 0 707 261 225 279 117 18 chr13 11321600 11321711 -90551458 - MER34 LTR ERV1 -420 122 1 * 1814 147 17 13 chr13 11321786 11322085 -90551084 - AluJo SINE Alu -12 300 1 4308 80 5 0 chr13 11322540 11323091 -90550078 - MER41A LTR ERV1 0 554 1 297 286 20 10 chr13 11323757 11323855 -90549314 - MER5A DNA MER1_type -80 109 11 2227 105 20 0 chr13 11324167 11324461 -90548708 - AluSx SINE Alu -12 300 1 1327 192 65 73 chr13 11325066 11325436 -90547733 - MER93b LTR ERV1 0 373 7 2319 97 0 0 chr13 11325446 11325735 -90547434 - AluSq SINE Alu -24 289 1 659 200 200 0 chr13 11325954 11326119 -90547050 + MSTB1 LTR MaLR 1 198 -259 333 0 0 0 chr13 11326129 11326166 -90547003 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 566 191 0 0 chr13 11326179 11326273 -90546896 - FLAM_A SINE Alu -36 106 13 1021 178 44 40 chr13 11326273 11326498 -90546671 + MSTB1 LTR MaLR 170 395 -37 413 264 89 72 chr13 11326555 11326815 -90546354 + MLT1I LTR MaLR 102 369 -40 180 0 0 0 chr13 11326815 11326835 -90546334 + (TG)n Simple_repeat Simple_repeat 2 21 0 413 264 89 72 chr13 11326835 11326866 -90546303 + MLT1I LTR MaLR 369 398 -11 1402 171 0 17 chr13 11327742 11327981 -90545188 + AluJb SINE Alu 76 310 -2 667 283 57 9 chr13 11328051 11328281 -90544888 + MIR SINE MIR 4 244 -18 544 247 19 13 chr13 11328359 11328517 -90544652 + MIR SINE MIR 84 242 -20 1069 170 0 66 chr13 11329390 11329425 -90543744 + AluJo SINE Alu 87 123 -189 2252 113 0 3 chr13 11329425 11329726 -90543443 - AluSx SINE Alu -12 300 1 1069 170 0 66 chr13 11329726 11329931 -90543238 + AluJo SINE Alu 123 311 -1 754 126 15 7 chr13 11329931 11330066 -90543103 + GA-rich Low_complexity Low_complexity 1 136 0 609 126 42 14 chr13 11330102 11330245 -90542924 + GA-rich Low_complexity Low_complexity 2 148 0 2921 143 10 8 chr13 11330560 11331041 -90542128 + MER31A LTR ERV1 4 485 0 29 0 0 0 chr13 11332401 11332430 -90540739 + AT_rich Low_complexity Low_complexity 1 29 0 1317 117 44 19 chr13 11332544 11332750 -90540419 + AluSg/x SINE Alu 83 293 -19 1250 191 23 27 chr13 11333129 11333391 -90539778 + AluJo SINE Alu 42 302 -10 236 119 24 24 chr13 11333598 11333640 -90539529 - Alu SINE Alu -257 43 2 1633 208 15 43 chr13 11333642 11334041 -90539128 - L1MB3 LINE L1 -43 6140 5753 732 193 34 2 chr13 11334035 11334221 -90538948 - L1P5 LINE L1 -698 5458 5258 * 371 156 0 26 chr13 11335241 11335318 -90537851 + L1MA7 LINE L1 6214 6288 -3 2149 125 36 31 chr13 11335352 11335711 -90537458 + THE1B LTR MaLR 2 362 -2 769 263 35 26 chr13 11336283 11336515 -90536654 - MIR SINE MIR -12 250 17 255 241 0 0 chr13 11336548 11336602 -90536567 - L2 LINE L2 0 3272 3219 271 350 110 28 chr13 11337417 11337808 -90535361 - L2 LINE L2 -339 2975 2553 214 380 25 8 chr13 11339286 11339407 -90533762 + MIR SINE MIR 20 142 -66 1722 191 0 28 chr13 11339549 11339869 -90533300 - AluJo SINE Alu -1 311 1 293 329 106 56 chr13 11341254 11341698 -90531471 - L2 LINE L2 0 3272 2807 550 288 115 71 chr13 11342072 11342482 -90530687 + MLT1K LTR MaLR 3 430 -158 1752 109 0 0 chr13 11343136 11343365 -90529804 - AluSg/x SINE Alu -16 296 68 183 318 45 0 chr13 11343579 11343645 -90529524 - MIR SINE MIR -118 144 76 1809 124 69 0 chr13 11344240 11344515 -90528654 + AluSx SINE Alu 3 296 -16 1907 153 37 3 chr13 11344637 11344937 -90528232 - AluSx SINE Alu -2 310 1 411 21 0 0 chr13 11345018 11345066 -90528103 + (CA)n Simple_repeat Simple_repeat 1 48 0 1706 166 28 7 chr13 11345334 11345623 -90527546 - AluJo SINE Alu -15 297 3 1809 179 7 0 chr13 11346150 11346446 -90526723 + AluJb SINE Alu 4 301 -11 821 184 92 0 chr13 11347888 11348051 -90525118 - MER45A DNA AcHobo 0 178 1 21 0 0 0 chr13 11348531 11348552 -90524617 + AT_rich Low_complexity Low_complexity 1 21 0 2233 123 3 0 chr13 11349705 11350014 -90523155 + AluSp SINE Alu 1 310 -3 325 310 18 9 chr13 11350355 11350468 -90522701 - L2 LINE L2 -182 3090 2977 1024 150 0 0 chr13 11350726 11350873 -90522296 + AluSg/x SINE Alu 145 291 -19 261 364 71 0 chr13 11350947 11351172 -90521997 - L2 LINE L2 -636 2678 2438 352 282 48 8 chr13 11351309 11351433 -90521736 - L2 LINE L2 -1362 1952 1824 198 364 61 45 chr13 11351913 11352045 -90521124 + L2 LINE L2 3139 3272 0 352 253 132 66 chr13 11352108 11352488 -90520681 - L2 LINE L2 -1605 1709 1305 1198 250 99 97 chr13 11352646 11352887 -90520282 - MER45C DNA AcHobo -304 649 410 1446 182 124 30 chr13 11352887 11353249 -90519920 + MSTD LTR MaLR 1 396 0 1198 250 99 97 chr13 11353249 11353655 -90519514 - MER45C DNA AcHobo -543 410 1 210 143 0 0 chr13 11353729 11353764 -90519405 + (T)n Simple_repeat Simple_repeat 1 35 0 305 313 8 45 chr13 11353800 11353934 -90519235 + L2 LINE L2 2927 3055 -217 2213 119 0 0 chr13 11354587 11354880 -90518289 - AluSx SINE Alu -15 297 5 5627 116 13 14 chr13 11354895 11355734 -90517435 - L1PA15 LINE L1 0 6165 5328 754 233 56 11 chr13 11355759 11355939 -90517230 + MER5A DNA MER1_type 1 188 -1 367 279 29 7 chr13 11356003 11356139 -90517030 + L1MDa LINE L1 2444 2582 -3958 357 188 0 0 chr13 11356162 11356231 -90516938 + L1MA9 LINE L1 6239 6307 -5 2146 109 0 0 chr13 11358374 11358704 -90514465 + AluY SINE Alu 1 330 0 209 217 43 0 chr13 11359570 11359616 -90513553 + L2 LINE L2 3246 3293 -20 1239 159 5 10 chr13 11360135 11360342 -90512827 + AluJo SINE Alu 85 290 -22 918 56 0 0 chr13 11361357 11361482 -90511687 + (TTC)n Simple_repeat Simple_repeat 2 126 0 1866 149 0 43 chr13 11361484 11361785 -90511384 - AluJo SINE Alu -24 288 1 389 279 90 71 chr13 11362282 11362605 -90510564 + L1ME LINE L1 5264 5592 -529 2225 98 3 3 chr13 11362875 11363170 -90509999 - AluSp SINE Alu -12 301 7 1214 122 22 0 chr13 11363274 11363436 -90509733 - AluSc SINE Alu -12 297 129 2387 79 20 0 chr13 11363436 11363741 -90509428 - AluY SINE Alu 0 311 1 1214 122 22 0 chr13 11363741 11363759 -90509410 - AluSc SINE Alu -180 129 113 324 289 159 36 chr13 11363764 11364230 -90508939 - L2 LINE L2 -35 3278 2737 351 290 0 0 chr13 11364364 11364457 -90508712 - MIR SINE MIR -83 125 33 1731 157 3 63 chr13 11365302 11365620 -90507549 - AluJo SINE Alu -13 299 1 1127 129 0 38 chr13 11365648 11365857 -90507312 + L1MB2 LINE L1 5924 6124 -47 1436 139 0 39 chr13 11365857 11366087 -90507082 + AluSg/x SINE Alu 80 300 -10 891 308 80 13 chr13 11366350 11366802 -90506367 + L2 LINE L2 1840 2321 -993 2229 98 7 0 chr13 11366961 11367246 -90505923 - AluSq SINE Alu -26 287 1 1334 228 37 67 chr13 11367320 11367812 -90505357 + L1MC5 LINE L1 6752 7228 -733 * 4355 168 31 46 chr13 11367802 11368976 -90504193 + L1MB3 LINE L1 5015 6160 -23 987 160 83 73 chr13 11369028 11369266 -90503903 + L1MC5 LINE L1 7276 7519 -442 2294 109 3 0 chr13 11369266 11369578 -90503591 - AluSp SINE Alu 0 313 1 987 160 83 73 chr13 11369578 11369652 -90503517 + L1MC5 LINE L1 7519 7591 -370 662 223 73 10 chr13 11369692 11369898 -90503271 + L1MC5 LINE L1 7679 7897 -64 1757 179 7 3 chr13 11371045 11371352 -90501817 - AluJo SINE Alu -4 308 1 205 312 196 0 chr13 11371660 11371798 -90501371 - MIR SINE MIR -49 213 49 23 33 0 0 chr13 11372130 11372160 -90501009 + AT_rich Low_complexity Low_complexity 1 30 0 2172 192 65 9 chr13 11372300 11372771 -90500398 - MLT1F LTR MaLR -1 541 1 381 257 53 43 chr13 11374282 11374695 -90498474 + MLT1H LTR MaLR 20 517 -32 262 146 164 0 chr13 11375501 11375556 -90497613 + MIR SINE MIR 83 146 -116 962 255 56 19 chr13 11377139 11377406 -90495763 + MLT1J2 LTR MaLR 1 277 -173 611 265 61 5 chr13 11377442 11377638 -90495531 + MLT1J2 LTR MaLR 244 450 0 4720 163 29 38 chr13 11377835 11378999 -90494170 + L1MB8 LINE L1 4872 6045 -133 4507 44 4 2 chr13 11378999 11379542 -90493627 - L1PA4 LINE L1 0 6155 5612 2396 96 3 0 chr13 11379542 11379845 -90493324 - AluSx SINE Alu -8 304 1 4720 163 29 38 chr13 11379845 11379991 -90493178 + L1MB8 LINE L1 6043 6174 -4 268 173 0 19 chr13 11380229 11380281 -90492888 + MER63 DNA MER1_type 1 51 -159 * 1351 184 94 3 chr13 11380279 11380567 -90492602 + MER63 DNA MER1_type 748 1061 0 204 306 185 9 chr13 11381330 11381438 -90491731 - L2 LINE L2 -3 3269 3143 189 143 24 24 chr13 11381536 11381578 -90491591 + L2 LINE L2 3230 3271 -1 185 154 103 0 chr13 11382622 11382661 -90490508 - L3 LINE CR1 -1 1576 1534 252 0 0 0 chr13 11382810 11382838 -90490331 + (TTAAA)n Simple_repeat Simple_repeat 4 31 0 321 272 49 0 chr13 11382841 11382922 -90490247 + LTR33 LTR ERVL 17 101 -420 629 170 65 26 chr13 11382922 11383075 -90490094 + MER5A DNA MER1_type 7 165 -24 543 314 77 23 chr13 11383086 11383474 -90489695 + LTR33 LTR ERVL 86 494 -27 4309 140 28 17 chr13 11383890 11384642 -90488527 - L1MB3 LINE L1 -1 6182 5423 186 280 42 93 chr13 11384925 11385043 -90488126 - MIR SINE MIR -81 127 16 332 287 131 0 chr13 11386668 11386790 -90486379 + MIR SINE MIR 11 148 -114 216 366 0 0 chr13 11387186 11387268 -90485901 - L2 LINE L2 -37 3235 3154 453 358 12 0 chr13 11387288 11387453 -90485716 + L2 LINE L2 2862 3028 -285 2038 115 11 7 chr13 11388464 11388751 -90484418 + AluSx SINE Alu 1 288 -24 181 148 19 19 chr13 11388975 11389029 -90484140 + (TA)n Simple_repeat Simple_repeat 2 55 0 1970 121 37 0 chr13 11389065 11389337 -90483832 - AluSx SINE Alu -30 282 1 691 251 11 6 chr13 11389592 11389767 -90483402 - MER5B DNA MER1_type -2 176 1 22 35 0 0 chr13 11389889 11389918 -90483251 + AT_rich Low_complexity Low_complexity 1 29 0 5360 123 15 15 chr13 11390042 11390543 -90482626 - L1PA15 LINE L1 0 6165 5662 1911 72 8 0 chr13 11390543 11390778 -90482391 - AluSg SINE Alu -13 297 61 5360 123 15 15 chr13 11390778 11391088 -90482081 - L1PA15 LINE L1 -502 5663 5354 358 215 123 23 chr13 11391096 11391226 -90481943 - MIR SINE MIR -118 144 2 194 279 33 0 chr13 11391745 11391806 -90481363 + MIR SINE MIR 127 189 -73 1851 88 4 0 chr13 11392094 11392332 -90480837 - AluSx SINE Alu -10 302 64 2110 159 8 8 chr13 11393632 11393997 -90479172 - L1PA16 LINE L1 0 6166 5802 181 275 8 100 chr13 11394007 11394127 -90479042 - MIR SINE MIR -139 123 15 424 185 148 19 chr13 11395119 11395227 -90477942 + FLAM_A SINE Alu 2 123 -10 357 240 58 10 chr13 11395487 11395591 -90477578 - MIR SINE MIR -54 208 100 2099 180 23 2 chr13 11395660 11396055 -90477114 - L1MB2 LINE L1 0 6171 5769 1551 183 6 45 chr13 11397026 11397338 -90475831 + AluJb SINE Alu 1 300 -12 855 122 0 68 chr13 11397754 11397901 -90475268 - FLAM_C SINE Alu -6 137 1 3610 133 122 47 chr13 11398139 11398869 -90474300 + LTR1 LTR ERV1 1 785 0 2325 123 0 0 chr13 11399946 11400256 -90472913 + AluSx SINE Alu 1 310 -2 1687 146 0 19 chr13 11401815 11402083 -90471086 + AluJo SINE Alu 34 296 -16 213 189 0 0 chr13 11402322 11402359 -90470810 - MIR SINE MIR -70 192 156 21 57 0 0 chr13 11402477 11402512 -90470657 + AT_rich Low_complexity Low_complexity 1 35 0 423 277 36 15 chr13 11402851 11402988 -90470181 - MIR SINE MIR -119 143 4 480 58 207 69 chr13 11403941 11404028 -90469141 + HY3 scRNA scRNA 1 99 -2 2302 113 0 0 chr13 11404030 11404331 -90468838 - AluSq SINE Alu -12 301 1 708 319 42 7 chr13 11404559 11404697 -90468472 - LTR16C LTR ERVL -6 485 353 2512 83 0 0 chr13 11404697 11405009 -90468160 + AluSx SINE Alu 1 312 0 708 319 42 7 chr13 11405009 11405158 -90468011 - LTR16C LTR ERVL -138 353 188 337 199 139 60 chr13 11405284 11405435 -90467734 - L1ME4a LINE L1 -229 5892 5730 657 243 83 17 chr13 11406189 11406370 -90466799 - MIR SINE MIR -47 215 23 2371 96 3 6 chr13 11406625 11406939 -90466230 - AluSq SINE Alu 0 313 1 634 168 23 30 chr13 11407436 11407567 -90465602 - FLAM_A SINE Alu 0 133 4 207 100 0 0 chr13 11407654 11407684 -90465485 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 334 267 22 0 chr13 11407730 11407820 -90465349 - L1MC4 LINE L1 -1337 6705 6614 582 228 0 0 chr13 11407825 11408137 -90465032 + (TA)n Simple_repeat Simple_repeat 1 312 0 319 308 0 0 chr13 11408138 11408229 -90464940 - L1MC4 LINE L1 -1339 6703 6613 234 290 14 14 chr13 11408497 11408566 -90464603 + L3 LINE CR1 327 395 -1182 472 240 106 39 chr13 11408700 11408879 -90464290 + L3 LINE CR1 1206 1396 -181 672 184 22 7 chr13 11409460 11409596 -90463573 + L1MC2 LINE L1 6082 6219 -125 890 163 34 34 chr13 11409596 11409774 -90463395 + AluJo SINE Alu 121 298 -14 569 210 17 17 chr13 11409783 11409902 -90463267 + L1MC2 LINE L1 6226 6344 0 306 359 84 18 chr13 11410062 11410229 -90462940 + L3 LINE CR1 1398 1575 -2 1933 139 0 37 chr13 11411484 11411779 -90461390 + AluJo SINE Alu 1 284 -28 204 67 0 0 chr13 11411779 11411809 -90461360 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 11412197 11412218 -90460951 + AT_rich Low_complexity Low_complexity 1 21 0 908 137 0 0 chr13 11412716 11412840 -90460329 - FLAM_C SINE Alu -17 126 3 525 272 147 5 chr13 11413345 11413536 -90459633 + MIR SINE MIR 2 219 -43 2187 114 10 0 chr13 11414253 11414550 -90458619 + AluSx SINE Alu 1 300 -12 22 70 0 0 chr13 11414694 11414737 -90458432 + AT_rich Low_complexity Low_complexity 1 43 0 1980 157 14 0 chr13 11415971 11416265 -90456904 - AluJo SINE Alu -14 298 1 247 390 19 0 chr13 11416952 11417057 -90456112 + MIR SINE MIR 24 130 -78 2368 72 6 28 chr13 11417211 11417531 -90455638 - AluSq SINE Alu 0 313 1 511 280 89 54 chr13 11417813 11418061 -90455108 + L2 LINE L2 2192 2430 -884 1702 155 56 25 chr13 11418061 11418345 -90454824 + AluJo SINE Alu 1 293 -19 2444 68 7 0 chr13 11418349 11418658 -90454511 + AluY SINE Alu 1 311 0 511 280 89 54 chr13 11418658 11418718 -90454451 + L2 LINE L2 2432 2516 -798 433 308 168 22 chr13 11418804 11419210 -90453959 + L2 LINE L2 2794 3272 0 1834 164 10 3 chr13 11419312 11419611 -90453558 + AluJb SINE Alu 2 302 -10 1010 149 30 6 chr13 11419613 11419781 -90453388 + AluJo/FRAM SINE Alu 128 299 -13 1389 269 91 61 chr13 11420168 11420220 -90452949 + L1M4 LINE L1 3463 3512 -2634 1978 117 17 7 chr13 11420220 11420538 -90452631 + AluSq SINE Alu 1 313 0 1389 269 91 61 chr13 11420538 11421429 -90451740 + L1M4 LINE L1 3512 4434 -1712 715 208 8 0 chr13 11421432 11421552 -90451617 - FLAM_C SINE Alu -10 123 3 987 306 57 26 chr13 11421569 11421945 -90451224 + L1ME4a LINE L1 3588 3992 -2154 1191 265 104 19 chr13 11421945 11422360 -90450809 - MLT1J2 LTR MaLR 0 450 1 987 306 57 26 chr13 11422360 11422598 -90450571 + L1ME4a LINE L1 3992 4221 -1925 268 111 0 0 chr13 11423380 11423416 -90449753 + MLT1I LTR MaLR 370 405 -4 477 253 92 89 chr13 11423419 11423723 -90449446 - MLT1I LTR MaLR -14 395 91 2150 122 0 16 chr13 11423723 11424035 -90449134 - AluSx SINE Alu -5 307 1 1224 272 43 6 chr13 11424325 11424649 -90448520 + MLT1I LTR MaLR 74 409 0 2063 165 20 17 chr13 11424719 11425065 -90448104 + MER7A DNA MER2_type 1 345 -1 298 230 105 47 chr13 11425087 11425278 -90447891 + L1ME4a LINE L1 4457 4658 -1488 303 306 9 27 chr13 11425279 11425390 -90447779 + MIR SINE MIR 154 262 0 309 278 80 20 chr13 11425457 11425608 -90447561 + L1ME4a LINE L1 4930 5089 -1057 311 308 36 36 chr13 11425751 11425972 -90447197 + L1ME4a LINE L1 5255 5475 -2333 465 243 77 0 chr13 11427826 11427995 -90445174 + L1ME4a LINE L1 5938 6119 -2 2586 62 0 0 chr13 11429057 11429363 -90443806 - AluY SINE Alu -5 306 1 1629 155 3 44 chr13 11429649 11429946 -90443223 - AluJb SINE Alu -22 290 6 354 200 80 38 chr13 11430044 11430207 -90442962 + LTR16A LTR ERVL 1 168 -282 532 299 116 39 chr13 11430212 11430492 -90442677 + L2 LINE L2 2852 3176 -137 819 145 15 8 chr13 11430492 11430623 -90442546 - FLAM_C SINE Alu 0 133 2 532 299 116 39 chr13 11430623 11430757 -90442412 + L2 LINE L2 3176 3298 -15 321 215 65 102 chr13 11430921 11431107 -90442062 - MER97b DNA MER1_type? 0 1053 716 352 202 167 0 chr13 11431119 11431203 -90441966 - MLT1I LTR MaLR -469 98 1 * 872 179 100 22 chr13 11431203 11431408 -90441761 - MER97b DNA MER1_type? -827 226 4 2184 177 34 45 chr13 11431445 11431913 -90441256 + MLT1C LTR MaLR 1 463 -4 738 214 0 0 chr13 11432029 11432146 -90441023 + FLAM_C SINE Alu 2 118 -15 22 35 0 0 chr13 11432166 11432195 -90440974 + AT_rich Low_complexity Low_complexity 1 29 0 2448 80 3 0 chr13 11432825 11433127 -90440042 - AluSx SINE Alu -7 305 3 331 225 233 8 chr13 11434100 11434220 -90438949 + MIR SINE MIR 116 262 0 315 362 86 18 chr13 11434671 11435008 -90438161 + L2 LINE L2 2618 2977 -337 1925 160 0 19 chr13 11435067 11435380 -90437789 - AluSx SINE Alu -5 307 1 257 347 113 20 chr13 11435380 11435521 -90437648 + L2 LINE L2 3106 3263 -9 540 261 0 36 chr13 11435859 11435997 -90437172 + FLAM_A SINE Alu 1 133 0 181 271 0 43 chr13 11436033 11436103 -90437066 + L2 LINE L2 2836 2902 -412 427 258 123 31 chr13 11436305 11436468 -90436701 + MIR SINE MIR 84 261 -1 274 333 28 9 chr13 11436532 11436640 -90436529 + L2 LINE L2 3161 3270 -2 336 282 145 0 chr13 11436653 11436770 -90436399 + MIR SINE MIR 59 192 -70 321 298 145 45 chr13 11437098 11437340 -90435829 - L1M2 LINE L1 -5599 1250 985 2339 156 14 0 chr13 11438161 11438520 -90434649 + MER47A DNA MER2_type 3 366 0 292 293 95 0 chr13 11438533 11438649 -90434520 - MIR3 SINE MIR -52 156 30 208 313 94 10 chr13 11438815 11438911 -90434258 - L2 LINE L2 -647 2667 2564 1798 163 0 10 chr13 11439115 11439426 -90433743 + AluJb SINE Alu 1 308 0 314 277 0 0 chr13 11439516 11439581 -90433588 + L2 LINE L2 3242 3306 -7 23 54 0 0 chr13 11440306 11440343 -90432826 + AT_rich Low_complexity Low_complexity 1 37 0 796 291 57 0 chr13 11440786 11441033 -90432136 + MIR SINE MIR 2 262 0 2197 114 3 0 chr13 11441245 11441552 -90431617 - AluSp SINE Alu -5 308 1 197 225 75 0 chr13 11441966 11442006 -90431163 + L2 LINE L2 3214 3256 -16 469 223 25 33 chr13 11442257 11442378 -90430791 - L1ME1 LINE L1 -41 6125 6006 180 413 73 34 chr13 11442897 11443103 -90430066 - L2 LINE L2 -54 3218 3005 866 333 138 52 chr13 11443349 11444425 -90428744 + L3 LINE CR1 1 1168 -409 239 313 196 9 chr13 11444540 11444652 -90428517 + MIR SINE MIR 23 155 -107 1154 139 0 97 chr13 11444745 11444983 -90428186 + MER20 DNA MER1_type 1 215 -4 181 214 157 29 chr13 11444991 11445061 -90428108 + L2 LINE L2 3139 3217 -55 1036 131 50 0 chr13 11445186 11445346 -90427823 + FAM SINE Alu 1 168 -7 233 355 66 28 chr13 11446565 11446776 -90426393 + L2 LINE L2 1292 1510 -1804 288 177 0 32 chr13 11446777 11446839 -90426330 - L2 LINE L2 -973 2341 2282 739 308 186 35 chr13 11446868 11447311 -90425858 + L2 LINE L2 1505 1880 -1434 1489 172 0 15 chr13 11447311 11447573 -90425596 - AluJo SINE Alu -6 306 49 739 308 186 35 chr13 11447573 11447768 -90425401 + L2 LINE L2 1880 2044 -1270 1887 149 0 14 chr13 11447768 11448063 -90425106 + AluJb SINE Alu 3 293 -19 739 308 186 35 chr13 11448063 11448502 -90424667 + L2 LINE L2 2044 2746 -568 2356 89 0 0 chr13 11448706 11448998 -90424171 + AluSq SINE Alu 1 292 -21 395 258 65 52 chr13 11449107 11449262 -90423907 + MIR SINE MIR 47 203 -59 452 215 129 0 chr13 11449822 11449915 -90423254 + FLAM_A SINE Alu 1 105 -37 253 281 0 0 chr13 11450422 11450479 -90422690 - L2 LINE L2 -69 3244 3188 985 83 15 8 chr13 11450560 11450692 -90422477 + AluSq/x SINE Alu 1 133 -180 2409 85 0 0 chr13 11451015 11451310 -90421859 - AluSg SINE Alu -15 295 1 375 222 191 16 chr13 11451757 11451883 -90421286 - L2 LINE L2 -19 3294 3147 1362 224 120 19 chr13 11452057 11452473 -90420696 - LTR40b LTR ERVL -4 458 1 423 371 10 10 chr13 11452489 11452694 -90420475 - L2 LINE L2 -420 2894 2690 1601 152 27 40 chr13 11452698 11452995 -90420174 + AluJo SINE Alu 1 293 -19 871 69 9 9 chr13 11453087 11453203 -90419966 - AluSg/x SINE Alu -12 300 185 3499 145 16 23 chr13 11453330 11453986 -90419183 - L1MB3 LINE L1 -330 5853 5203 197 244 0 0 chr13 11454024 11454065 -90419104 + MER5A DNA MER1_type 124 164 -25 305 307 108 48 chr13 11454212 11454590 -90418579 + L2 LINE L2 1987 2387 -927 917 159 90 16 chr13 11454900 11455089 -90418080 + MER20 DNA MER1_type 16 218 -1 1019 202 88 86 chr13 11455122 11455409 -90417760 + LTR16A1 LTR ERVL 26 316 -141 1566 194 80 14 chr13 11455409 11455760 -90417409 + MLT1A2 LTR MaLR 1 374 0 1019 202 88 86 chr13 11455760 11455903 -90417266 + LTR16A1 LTR ERVL 316 457 0 2240 119 61 3 chr13 11456214 11456558 -90416611 - THE1B LTR MaLR 0 364 1 2502 85 0 0 chr13 11456950 11457256 -90415913 - AluSx SINE Alu -6 306 1 430 282 122 0 chr13 11457435 11457591 -90415578 + MIR SINE MIR 12 186 -76 330 293 49 16 chr13 11457878 11458001 -90415168 - L2 LINE L2 -227 3045 2919 23 0 0 0 chr13 11458157 11458180 -90414989 + AT_rich Low_complexity Low_complexity 1 23 0 207 302 115 62 chr13 11458180 11458372 -90414797 - L2 LINE L2 -449 2865 2664 2212 105 7 3 chr13 11458627 11458921 -90414248 - AluSx SINE Alu -17 295 1 899 311 78 52 chr13 11459474 11459860 -90413309 - L2 LINE L2 -609 2705 2331 1908 162 25 11 chr13 11459860 11460218 -90412951 + L1MA4 LINE L1 5937 6299 -1 899 311 78 52 chr13 11460218 11460780 -90412389 - L2 LINE L2 -983 2331 1732 441 288 120 11 chr13 11460795 11460979 -90412190 + MER63A DNA MER1_type 5 208 -2 233 97 0 0 chr13 11461341 11461372 -90411797 + MSTB LTR MaLR 1 31 -395 1467 157 122 8 chr13 11462812 11463074 -90410095 - AluJo SINE Alu -16 296 5 204 260 0 0 chr13 11463250 11463300 -90409869 - L2 LINE L2 0 3272 3223 191 167 24 0 chr13 11463821 11463863 -90409306 + (TTA)n Simple_repeat Simple_repeat 3 45 0 331 310 103 6 chr13 11463870 11464044 -90409125 - L2 LINE L2 -16 3297 3107 236 284 12 12 chr13 11464047 11464128 -90409041 + L1MEd LINE L1 4 84 -6035 1266 110 0 0 chr13 11464191 11464364 -90408805 + AluSg/x SINE Alu 136 308 -2 1327 172 4 63 chr13 11465311 11465579 -90407590 - AluJo SINE Alu -22 290 39 301 339 65 0 chr13 11465851 11465975 -90407194 + L2 LINE L2 3140 3271 -1 1219 122 22 100 chr13 11466675 11466904 -90406265 - AluJo SINE Alu -23 289 79 220 214 22 67 chr13 11467157 11467246 -90405923 + T-rich Low_complexity Low_complexity 2 86 0 635 158 0 22 chr13 11467352 11467536 -90405633 + (CA)n Simple_repeat Simple_repeat 1 180 0 415 195 23 6 chr13 11467547 11467721 -90405448 + (CA)n Simple_repeat Simple_repeat 1 177 0 202 234 106 64 chr13 11468438 11468532 -90404637 + L2 LINE L2 3148 3245 -27 180 111 0 0 chr13 11469342 11469369 -90403800 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 1471 113 5 0 chr13 11469411 11469614 -90403555 - AluSp SINE Alu -16 297 94 1606 152 40 14 chr13 11471655 11471960 -90401209 - AluJb SINE Alu 0 312 1 1808 168 42 0 chr13 11472025 11472311 -90400858 - AluSx SINE Alu -14 298 1 1299 150 0 141 chr13 11472376 11472736 -90400433 - AluJb SINE Alu 0 318 5 1516 205 16 44 chr13 11473204 11473570 -90399599 - MLT1A1 LTR MaLR 0 365 10 192 40 0 0 chr13 11473767 11473792 -90399377 + (CA)n Simple_repeat Simple_repeat 1 25 0 340 314 17 0 chr13 11473994 11474112 -90399057 - MIR SINE MIR -90 172 53 1400 157 12 0 chr13 11474433 11474681 -90398488 + L1MA8 LINE L1 6037 6287 -4 2273 99 23 0 chr13 11475156 11475458 -90397711 - AluSc SINE Alu 0 309 1 636 110 0 11 chr13 11475458 11475549 -90397620 - L1MC1 LINE L1 -10 6323 6234 287 333 10 10 chr13 11476044 11476140 -90397029 + MIR SINE MIR 41 136 -72 878 145 11 102 chr13 11476836 11477022 -90396147 - MER45A DNA AcHobo -5 173 5 2266 125 0 0 chr13 11477136 11477448 -90395721 - AluSx SINE Alu 0 312 1 595 243 38 19 chr13 11477696 11477906 -90395263 + L1 LINE L1 5148 5361 -785 22 0 0 0 chr13 11478041 11478063 -90395106 + AT_rich Low_complexity Low_complexity 1 22 0 2663 40 0 0 chr13 11478096 11478393 -90394776 - AluY SINE Alu -14 297 1 22 35 0 0 chr13 11479052 11479081 -90394088 + AT_rich Low_complexity Low_complexity 1 29 0 309 238 10 0 chr13 11479147 11479248 -90393921 + L1MA4 LINE L1 6196 6297 -3 339 168 106 9 chr13 11480100 11480213 -90392956 - MIR3 SINE MIR -1 207 84 771 274 37 4 chr13 11480500 11480741 -90392428 + MIR SINE MIR 10 258 -4 1820 160 17 3 chr13 11482060 11482353 -90390816 - AluJo SINE Alu -15 297 1 1281 123 39 15 chr13 11483113 11483316 -90389853 + AluJo SINE Alu 83 290 -22 832 264 130 91 chr13 11483402 11483856 -90389313 - MLT1L LTR MaLR 0 615 131 462 36 0 0 chr13 11483856 11483912 -90389257 + (CA)n Simple_repeat Simple_repeat 2 57 0 832 264 130 91 chr13 11483912 11484049 -90389120 - MLT1L LTR MaLR -484 131 1 330 208 78 26 chr13 11484221 11484298 -90388871 + MIR SINE MIR 73 153 -55 208 245 20 0 chr13 11484463 11484512 -90388657 - L2 LINE L2 0 3272 3223 334 203 153 17 chr13 11484543 11484661 -90388508 + MLT1J LTR MaLR 336 469 -42 1756 166 75 51 chr13 11484706 11484784 -90388385 + MLT1B LTR MaLR 1 76 -314 2281 111 3 0 chr13 11484784 11485090 -90388079 - AluSx SINE Alu -5 307 1 1756 166 75 51 chr13 11485090 11485114 -90388055 + MLT1B LTR MaLR 76 98 -292 1404 186 86 43 chr13 11485114 11485319 -90387850 - MLT1A1 LTR MaLR -1 364 135 2257 95 3 0 chr13 11485319 11485638 -90387531 - AluSq SINE Alu 0 320 1 1404 186 86 43 chr13 11485638 11485780 -90387389 - MLT1A1 LTR MaLR -230 135 1 1756 166 75 51 chr13 11485780 11486050 -90387119 + MLT1B LTR MaLR 98 383 -7 22 35 0 0 chr13 11486967 11486996 -90386173 + AT_rich Low_complexity Low_complexity 1 29 0 511 148 23 23 chr13 11487172 11487300 -90385869 + GA-rich Low_complexity Low_complexity 1 128 0 652 156 63 1 chr13 11487487 11487616 -90385553 + L1MB8 LINE L1 5730 5873 -295 734 205 0 58 chr13 11487620 11487776 -90385393 + MLT1B LTR MaLR 192 338 -52 1663 141 4 0 chr13 11487797 11488031 -90385138 + AluSx SINE Alu 1 235 -77 1533 178 7 11 chr13 11488987 11489286 -90383883 + AluJo SINE Alu 11 308 0 180 0 0 0 chr13 11490248 11490268 -90382901 + (A)n Simple_repeat Simple_repeat 1 20 0 246 208 0 0 chr13 11491508 11491556 -90381613 - MER5B DNA MER1_type 0 178 131 1764 154 0 40 chr13 11491598 11491897 -90381272 - AluJo SINE Alu -25 287 1 4374 57 21 4 chr13 11491916 11492475 -90380694 + L1P3 LINE L1 1068 1636 -4825 472 153 27 121 chr13 11493154 11493193 -90379976 - L1ME1 LINE L1 0 6334 6293 626 165 55 31 chr13 11493193 11493320 -90379849 + FLAM_A SINE Alu 1 130 -3 472 153 27 121 chr13 11493320 11493409 -90379760 - L1ME1 LINE L1 -41 6293 6058 230 154 0 0 chr13 11493409 11493448 -90379721 - MER3 DNA MER1_type -160 49 11 2498 204 8 20 chr13 11493448 11493944 -90379225 - L1ME1 LINE L1 -148 6018 5529 2452 67 0 0 chr13 11494108 11494405 -90378764 + AluY SINE Alu 1 297 -14 229 221 21 105 chr13 11494879 11494974 -90378195 - L3 LINE CR1 -289 1288 1202 2137 42 109 14 chr13 11495415 11495699 -90377470 + AluY SINE Alu 1 311 0 3521 214 94 70 chr13 11495870 11497348 -90375821 + MER109 Unknown Unknown 7 1412 -1020 237 275 49 21 chr13 11497631 11497773 -90375396 + (CCCG)n Simple_repeat Simple_repeat 4 149 0 30 45 0 0 chr13 11497972 11498016 -90375153 + GC_rich Low_complexity Low_complexity 1 44 0 1825 132 11 14 chr13 11498887 11499167 -90374002 + AluJo SINE Alu 4 282 -30 258 284 0 0 chr13 11499857 11499924 -90373245 + MER52A LTR ERV1 1 67 -1688 848 213 58 45 chr13 11500120 11500396 -90372773 + MER52A LTR ERV1 26 357 -921 253 246 0 31 chr13 11500645 11500710 -90372459 + MLT1I LTR MaLR 345 407 -2 11423 188 79 51 chr13 11500794 11501937 -90371232 - L1MCa LINE L1 -2557 3869 2759 1874 129 80 0 chr13 11501937 11502223 -90370946 - AluSx SINE Alu -1 311 3 11423 188 79 51 chr13 11502223 11502805 -90370364 - L1MCa LINE L1 -3667 2759 2195 1671 96 0 0 chr13 11502805 11503013 -90370156 - AluSg/x SINE Alu -18 294 87 11423 188 79 51 chr13 11503013 11504040 -90369129 - L1MCa LINE L1 -4231 2195 1198 1880 125 0 11 chr13 11504040 11504304 -90368865 + AluSx SINE Alu 39 299 -13 11423 188 79 51 chr13 11504304 11504388 -90368781 - L1MCa LINE L1 -5228 1198 1118 1633 121 0 14 chr13 11504388 11504611 -90368558 - AluSg SINE Alu -84 226 7 11423 188 79 51 chr13 11504611 11504863 -90368306 - L1MCa LINE L1 -5308 1118 874 1973 91 80 4 chr13 11504863 11505137 -90368032 - AluSc SINE Alu -14 295 1 11423 188 79 51 chr13 11505137 11505770 -90367399 - L1MCa LINE L1 -5552 874 32 676 193 22 7 chr13 11505864 11505999 -90367170 + AluJb SINE Alu 117 253 -59 4718 75 5 34 chr13 11505999 11506473 -90366696 + L1PB1 LINE L1 5502 5952 -199 2099 104 7 14 chr13 11506473 11506762 -90366407 + AluSx SINE Alu 4 290 -22 4718 75 5 34 chr13 11506762 11506956 -90366213 + L1PB1 LINE L1 5952 6150 -1 1786 252 85 41 chr13 11506979 11507885 -90365284 + HAL1b LINE L1 62 1007 -341 310 273 23 76 chr13 11507929 11508101 -90365068 + HAL1b LINE L1 1115 1277 -71 829 155 8 0 chr13 11508115 11508244 -90364925 + FLAM_C SINE Alu 1 130 -3 1200 180 5 5 chr13 11508474 11508696 -90364473 - AluJb SINE Alu -3 309 88 926 149 0 12 chr13 11508701 11508869 -90364300 - L1MB4 LINE L1 0 6180 6015 2380 98 0 0 chr13 11510007 11510313 -90362856 - AluSc SINE Alu -2 307 2 330 26 0 0 chr13 11510313 11510352 -90362817 + (TA)n Simple_repeat Simple_repeat 2 40 0 2135 134 0 7 chr13 11510532 11510838 -90362331 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr13 11510838 11510867 -90362302 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 270 0 0 0 chr13 11510866 11510896 -90362273 + (CA)n Simple_repeat Simple_repeat 2 31 0 336 227 227 16 chr13 11510901 11511029 -90362140 - L2 LINE L2 0 3313 3159 2403 164 216 12 chr13 11511042 11511641 -90361528 - Tigger7 DNA MER2_type -9 2478 2 291 236 82 50 chr13 11511770 11511935 -90361234 - L1MC4a LINE L1 -199 5922 5750 219 228 70 0 chr13 11512587 11512644 -90360525 - MER5A DNA MER1_type -128 61 1 445 285 68 98 chr13 11512710 11512945 -90360224 + MIR SINE MIR 4 231 -31 360 324 49 14 chr13 11513005 11513147 -90360022 + MIR3 SINE MIR 7 153 -55 27 49 0 0 chr13 11513236 11513277 -90359892 + AT_rich Low_complexity Low_complexity 1 41 0 309 214 60 12 chr13 11513520 11513604 -90359565 + CT-rich Low_complexity Low_complexity 4 91 0 925 175 26 52 chr13 11513606 11513800 -90359369 - AluJo SINE Alu -38 274 86 2430 78 3 0 chr13 11513882 11514177 -90358992 - AluSp SINE Alu -17 296 1 2199 114 3 0 chr13 11514628 11514926 -90358243 + AluSx SINE Alu 1 299 -13 572 269 16 65 chr13 11517381 11517567 -90355602 + MER5B DNA MER1_type 1 177 -1 445 302 89 12 chr13 11518266 11518435 -90354734 + MER5A DNA MER1_type 8 189 0 840 214 66 6 chr13 11518922 11519104 -90354065 - MER3 DNA MER1_type -16 193 1 345 232 56 16 chr13 11519761 11519886 -90353283 + L1MC5 LINE L1 7796 7925 -36 684 244 28 11 chr13 11519926 11520106 -90353063 - MIR SINE MIR -6 256 74 373 310 131 12 chr13 11520193 11520438 -90352731 - L2 LINE L2 0 3313 3040 2133 120 0 3 chr13 11520788 11521079 -90352090 + AluSc SINE Alu 1 290 -19 2384 88 3 0 chr13 11521679 11521984 -90351185 - AluSx SINE Alu -6 306 1 2356 87 3 16 chr13 11522889 11523198 -90349971 - AluSx SINE Alu -7 305 1 275 188 24 24 chr13 11523579 11523664 -90349505 - HAL1 LINE L1 -121 2386 2302 927 216 123 47 chr13 11523765 11523999 -90349170 - HAL1 LINE L1 -538 1969 1696 258 32 0 0 chr13 11523999 11524030 -90349139 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 927 216 123 47 chr13 11524030 11524160 -90349009 - HAL1 LINE L1 -811 1696 1577 2199 120 0 0 chr13 11524171 11524471 -90348698 - AluSx SINE Alu -12 300 1 25 31 0 0 chr13 11524474 11524506 -90348663 + AT_rich Low_complexity Low_complexity 1 32 0 1028 252 17 4 chr13 11524767 11524997 -90348172 - MIR SINE MIR -24 238 6 710 267 146 26 chr13 11525002 11525479 -90347690 - L1MC4a LINE L1 -667 5507 5278 341 336 56 48 chr13 11525572 11525822 -90347347 - L1MC4a LINE L1 -1013 5133 4882 270 302 122 26 chr13 11525952 11526466 -90346703 - L1MC4a LINE L1 -1487 4659 4095 1682 252 180 68 chr13 11526466 11526556 -90346613 - HAL1 LINE L1 -945 1562 1483 243 0 0 0 chr13 11526556 11526583 -90346586 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1682 252 180 68 chr13 11526583 11527078 -90346091 - HAL1 LINE L1 -1024 1483 1045 183 80 0 0 chr13 11527078 11527103 -90346066 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 1682 252 180 68 chr13 11527103 11527921 -90345248 - HAL1 LINE L1 -1462 1045 1 184 280 129 30 chr13 11527925 11528057 -90345112 + L2 LINE L2 2689 2833 -481 227 360 0 9 chr13 11528087 11528198 -90344971 + CT-rich Low_complexity Low_complexity 1 110 0 1939 121 29 0 chr13 11529441 11529713 -90343456 - AluSx SINE Alu -32 280 1 2546 47 14 0 chr13 11529950 11530247 -90342922 - AluY SINE Alu -10 301 1 1491 183 32 18 chr13 11530406 11530691 -90342478 - AluJb SINE Alu -22 290 2 2311 76 3 7 chr13 11530721 11531022 -90342147 + AluY SINE Alu 1 300 -11 488 252 18 0 chr13 11531149 11531260 -90341909 + MER58 DNA MER1_type 1 113 -102 300 228 0 0 chr13 11531263 11531320 -90341849 + MER58 DNA MER1_type 2364 2420 0 2234 101 3 3 chr13 11531521 11531818 -90341351 + AluSp SINE Alu 1 297 -16 2333 81 7 10 chr13 11532669 11532978 -90340191 + AluSq SINE Alu 1 308 -5 28 79 0 0 chr13 11533062 11533125 -90340044 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr13 11533405 11533435 -90339734 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr13 11534509 11534538 -90338631 + (T)n Simple_repeat Simple_repeat 1 29 0 214 279 0 76 chr13 11536585 11536664 -90336505 - L2 LINE L2 0 3313 3241 675 270 204 18 chr13 11536765 11536966 -90336203 - L2 LINE L2 -313 3000 2838 2296 83 3 0 chr13 11536966 11537255 -90335914 + AluY SINE Alu 2 291 -20 675 270 204 18 chr13 11537255 11537402 -90335767 - L2 LINE L2 -475 2838 2593 2210 101 10 0 chr13 11537534 11537830 -90335339 + AluSx SINE Alu 1 299 -13 26 30 0 0 chr13 11538683 11538716 -90334453 + AT_rich Low_complexity Low_complexity 1 33 0 2001 136 13 13 chr13 11538970 11539271 -90333898 + AluJo SINE Alu 1 301 -11 534 262 52 62 chr13 11539470 11539680 -90333489 - MIR SINE MIR -18 244 37 289 222 10 81 chr13 11539986 11540085 -90333084 + L1 LINE L1 4108 4199 -1947 419 309 92 43 chr13 11540118 11540445 -90332724 + L1 LINE L1 4260 4602 -1544 265 260 0 13 chr13 11540602 11540679 -90332490 + L1 LINE L1 4751 4826 -1320 21 0 0 0 chr13 11540741 11540762 -90332407 + AT_rich Low_complexity Low_complexity 1 21 0 1924 140 14 0 chr13 11540763 11541042 -90332127 - AluJb SINE Alu -23 289 7 313 248 26 17 chr13 11541053 11541170 -90331999 + L1 LINE L1 4922 5039 -1107 29 28 0 0 chr13 11541203 11541239 -90331930 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 11541256 11541278 -90331891 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr13 11541586 11541639 -90331530 + AT_rich Low_complexity Low_complexity 1 53 0 2013 113 53 0 chr13 11541675 11541958 -90331211 + AluSx SINE Alu 2 299 -13 655 258 32 32 chr13 11542129 11542315 -90330854 + MER5A DNA MER1_type 4 189 0 587 252 15 0 chr13 11542650 11542781 -90330388 - FLAM_A SINE Alu 0 133 1 313 258 129 0 chr13 11542935 11543028 -90330141 + MIR SINE MIR 118 222 -40 2836 9 0 6 chr13 11543137 11543452 -90329717 - AluYb8 SINE Alu -5 313 1 279 262 123 8 chr13 11543508 11543630 -90329539 - L1ME4a LINE L1 -25 6096 5961 22 0 0 0 chr13 11543835 11543857 -90329312 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 11544361 11544399 -90328770 + AT_rich Low_complexity Low_complexity 1 38 0 2066 148 33 33 chr13 11544946 11545310 -90327859 - THE1B LTR MaLR 0 364 1 530 185 96 107 chr13 11546486 11546664 -90326505 - MER20 DNA MER1_type -42 177 2 325 280 47 9 chr13 11546916 11547023 -90326146 + MIR SINE MIR 131 241 -21 635 221 16 0 chr13 11547364 11547491 -90325678 + FLAM_C SINE Alu 2 130 -3 856 194 13 0 chr13 11548569 11548724 -90324445 - MER5A DNA MER1_type -3 186 30 1743 178 3 13 chr13 11549424 11549739 -90323430 - AluJb SINE Alu 0 312 1 29 70 0 0 chr13 11550236 11550293 -90322876 + AT_rich Low_complexity Low_complexity 1 57 0 456 67 0 0 chr13 11551494 11551554 -90321615 + (TG)n Simple_repeat Simple_repeat 2 61 0 384 202 11 34 chr13 11552433 11552522 -90320647 + MER105 DNA DNA 118 204 0 630 139 0 0 chr13 11553843 11553944 -90319225 + FLAM_C SINE Alu 33 133 -10 328 327 12 36 chr13 11554283 11554448 -90318721 - MER5B DNA MER1_type -17 161 1 1090 179 76 72 chr13 11554686 11554976 -90318193 + AluJo SINE Alu 1 291 -11 348 24 0 0 chr13 11554992 11555033 -90318136 + (TG)n Simple_repeat Simple_repeat 2 42 0 196 275 64 55 chr13 11555320 11555429 -90317740 + L3b LINE CR1 1176 1285 -298 * 287 317 195 22 chr13 11555401 11555705 -90317464 - L2 LINE L2 -189 3124 2764 23 54 0 0 chr13 11556310 11556347 -90316822 + AT_rich Low_complexity Low_complexity 1 37 0 634 233 7 14 chr13 11556375 11556521 -90316648 + FRAM SINE Alu 20 164 -12 181 211 58 19 chr13 11556619 11556671 -90316498 - MER5A DNA MER1_type 0 189 136 218 329 14 0 chr13 11556722 11556795 -90316374 + MER5A DNA MER1_type 95 168 -21 2312 101 0 0 chr13 11557149 11557446 -90315723 + AluSx SINE Alu 1 297 -15 48 18 0 0 chr13 11558055 11558110 -90315059 + AT_rich Low_complexity Low_complexity 1 55 0 648 184 0 0 chr13 11558110 11558213 -90314956 - U6 snRNA snRNA -3 104 2 180 0 0 0 chr13 11558784 11558804 -90314365 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1027 190 5 19 chr13 11558807 11559012 -90314157 - AluJo SINE Alu -24 288 87 798 183 26 37 chr13 11560779 11560970 -90312199 + MER5A DNA MER1_type 1 189 0 273 268 43 43 chr13 11561730 11561868 -90311301 + MLT1J1 LTR MaLR 288 425 -21 243 358 82 0 chr13 11563059 11563193 -90309976 - MIR3 SINE MIR -7 201 57 24 0 0 0 chr13 11564476 11564500 -90308669 + AT_rich Low_complexity Low_complexity 1 24 0 474 348 76 40 chr13 11564937 11565213 -90307956 + L3 LINE CR1 1263 1548 -29 1276 201 38 45 chr13 11565798 11566086 -90307083 + AluJo SINE Alu 1 286 -26 2298 53 40 10 chr13 11566548 11566849 -90306320 + AluY SINE Alu 1 310 -1 762 65 0 0 chr13 11567062 11567170 -90305999 + AluSp/q SINE Alu 206 313 0 27 0 0 0 chr13 11568397 11568424 -90304745 + AT_rich Low_complexity Low_complexity 1 27 0 32 26 0 0 chr13 11569555 11569594 -90303575 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr13 11570118 11570167 -90303002 + AT_rich Low_complexity Low_complexity 1 49 0 26 64 0 0 chr13 11572589 11572636 -90300533 + AT_rich Low_complexity Low_complexity 1 47 0 2084 148 3 0 chr13 11573113 11573423 -90299746 - AluSx SINE Alu -1 311 1 2298 92 7 0 chr13 11573595 11573889 -90299280 - AluSx SINE Alu -16 296 1 21 0 0 0 chr13 11573889 11573910 -90299259 + AT_rich Low_complexity Low_complexity 1 21 0 325 261 52 15 chr13 11574205 11574339 -90298830 - L1MA10 LINE L1 0 6334 6196 400 215 30 44 chr13 11574383 11574518 -90298651 - L1MB8 LINE L1 -167 6011 5879 980 184 85 206 chr13 11576276 11576619 -90296550 - L1ME1 LINE L1 -281 5885 5559 591 139 111 0 chr13 11576619 11576727 -90296442 - FRAM SINE Alu -8 168 49 980 184 85 206 chr13 11576727 11576995 -90296174 - L1ME1 LINE L1 -607 5559 5260 421 189 74 0 chr13 11577107 11577202 -90295967 - L1MD3 LINE L1 -105 7890 7789 300 322 25 19 chr13 11577186 11577374 -90295795 - L1MDa LINE L1 -4620 1595 1450 * 805 232 143 36 chr13 11577381 11577661 -90295508 + MER2 DNA MER2_type 33 342 -3 3699 279 54 16 chr13 11577715 11579038 -90294131 - L1MDa LINE L1 -4979 1417 44 1364 197 45 31 chr13 11579529 11579819 -90293350 + AluJo SINE Alu 1 294 -18 1492 175 0 12 chr13 11580652 11580903 -90292266 + AluJo SINE Alu 7 254 -58 274 215 13 38 chr13 11580909 11580955 -90292214 + GA-rich Low_complexity Low_complexity 3 48 -31 210 37 0 0 chr13 11580955 11580982 -90292187 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 274 215 13 38 chr13 11580982 11581014 -90292155 + GA-rich Low_complexity Low_complexity 48 79 0 324 261 137 75 chr13 11581025 11581331 -90291838 + L1MC4a LINE L1 5607 5931 -1877 492 195 160 50 chr13 11581511 11581794 -90291375 - MER2 DNA MER2_type 0 345 1 1005 218 36 0 chr13 11582031 11582251 -90290918 + MER46A DNA MER2_type 9 236 0 186 240 120 53 chr13 11582781 11582856 -90290313 - L2 LINE L2 -38 3234 3155 195 288 15 30 chr13 11583346 11583412 -90289757 - L2 LINE L2 -660 2654 2590 27 29 0 0 chr13 11583633 11583667 -90289502 + AT_rich Low_complexity Low_complexity 1 34 0 219 311 143 45 chr13 11583691 11584108 -90289061 - L2 LINE L2 -939 2375 1896 2129 121 7 7 chr13 11584108 11584414 -90288755 + AluSx SINE Alu 1 306 -6 219 311 143 45 chr13 11584414 11584513 -90288656 - L2 LINE L2 -1418 1896 1808 183 80 0 0 chr13 11584843 11584868 -90288301 + (T)n Simple_repeat Simple_repeat 1 25 0 1812 145 34 17 chr13 11584877 11585174 -90287995 - AluJo SINE Alu -10 302 1 181 176 0 29 chr13 11586310 11586344 -90286825 - MIR SINE MIR -73 189 157 2248 98 3 25 chr13 11586621 11586937 -90286232 + AluSc SINE Alu 1 309 0 1630 188 0 17 chr13 11587123 11587410 -90285759 + AluJb SINE Alu 3 284 -28 1630 133 92 27 chr13 11587493 11587786 -90285383 + AluJb SINE Alu 1 312 0 574 27 27 0 chr13 11587821 11587896 -90285273 - MADE1 DNA Mariner -3 77 1 189 0 0 0 chr13 11588050 11588071 -90285098 + (TG)n Simple_repeat Simple_repeat 2 22 0 674 161 8 69 chr13 11589037 11589167 -90284002 + FLAM_C SINE Alu 9 130 -13 1181 110 0 6 chr13 11589179 11589343 -90283826 - AluY SINE Alu -27 284 122 24 0 0 0 chr13 11589343 11589367 -90283802 + AT_rich Low_complexity Low_complexity 1 24 0 1690 157 14 38 chr13 11589394 11589687 -90283482 + AluJo SINE Alu 10 295 -17 252 302 65 36 chr13 11589752 11589891 -90283278 - L2 LINE L2 -1386 1928 1786 423 307 147 13 chr13 11590585 11590816 -90282353 + MIR SINE MIR 1 262 0 2008 99 3 58 chr13 11592426 11592738 -90280431 - AluSx SINE Alu -17 295 1 1885 135 20 3 chr13 11592861 11593164 -90280005 + AluSx SINE Alu 1 308 -4 23 33 0 0 chr13 11594048 11594078 -90279091 + AT_rich Low_complexity Low_complexity 1 30 0 871 114 8 15 chr13 11594570 11594702 -90278467 + FLAM_C SINE Alu 1 131 -2 1966 142 7 13 chr13 11594893 11595203 -90277966 + AluSx SINE Alu 1 308 -4 259 261 0 46 chr13 11595309 11595374 -90277795 - AluS SINE Alu -9 293 232 361 278 139 11 chr13 11596995 11597182 -90275987 + MIR SINE MIR 52 262 0 591 200 36 0 chr13 11597373 11597483 -90275686 + FRAM SINE Alu 25 138 -38 581 177 133 0 chr13 11597597 11597710 -90275459 + FLAM_C SINE Alu 1 128 -5 1924 147 0 0 chr13 11597720 11597999 -90275170 + AluJb SINE Alu 11 289 -23 1319 167 125 11 chr13 11598395 11598659 -90274510 - AluJo SINE Alu -18 294 1 1210 201 20 8 chr13 11599041 11599285 -90273884 + AluJo SINE Alu 60 306 -6 2093 107 0 4 chr13 11599901 11600209 -90272960 + AluSg SINE Alu 1 307 0 459 296 145 13 chr13 11600375 11600534 -90272635 + MER5A DNA MER1_type 4 183 -6 2164 121 0 6 chr13 11600597 11600910 -90272259 - AluSx SINE Alu -1 311 1 1460 169 22 77 chr13 11600912 11601225 -90271944 - AluJo SINE Alu -16 296 1 915 104 72 10 chr13 11601256 11601541 -90271628 - THE1C LTR MaLR 0 375 1 248 327 44 76 chr13 11601891 11602039 -90271130 + L2 LINE L2 2461 2597 -717 1074 146 57 33 chr13 11602039 11602251 -90270918 + MER20 DNA MER1_type 2 218 -1 248 327 44 76 chr13 11602251 11602377 -90270792 + L2 LINE L2 2597 2726 -588 26 30 0 0 chr13 11602429 11602462 -90270707 + AT_rich Low_complexity Low_complexity 1 33 0 1338 174 13 0 chr13 11602477 11602701 -90270468 - AluJo SINE Alu -84 228 2 2168 69 12 75 chr13 11602714 11603033 -90270136 - AluSg SINE Alu -11 299 1 237 281 47 16 chr13 11603378 11603442 -90269727 + L2 LINE L2 3239 3304 -9 1192 90 90 0 chr13 11603651 11603829 -90269340 + MER30 DNA MER1_type 1 194 -36 1895 137 24 3 chr13 11604129 11604422 -90268747 + AluJb SINE Alu 4 302 -10 2069 107 35 3 chr13 11604540 11604829 -90268340 + AluSx SINE Alu 1 298 -14 182 225 0 28 chr13 11605064 11605135 -90268034 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 2012 137 3 0 chr13 11605730 11606036 -90267133 - AluSg SINE Alu -3 307 1 503 240 88 88 chr13 11606793 11606882 -90266287 - L1M4 LINE L1 -1440 4706 4618 286 29 0 0 chr13 11606882 11606916 -90266253 + (TTTTA)n Simple_repeat Simple_repeat 2 80 0 2198 103 0 0 chr13 11606916 11607197 -90265972 - AluSg SINE Alu -29 281 1 503 240 88 88 chr13 11607197 11607469 -90265700 - L1M4 LINE L1 -1526 4620 4344 256 164 0 0 chr13 11607557 11607612 -90265557 - L1MB8 LINE L1 -4 6174 6120 2788 178 21 8 chr13 11607565 11608098 -90265071 - L1MB7 LINE L1 -16 6168 5629 991 155 5 17 chr13 11608126 11608337 -90264832 - L1MB7 LINE L1 -693 5477 5263 7099 159 29 30 chr13 11608354 11610568 -90262601 - L1MA4 LINE L1 -1 6299 4065 1616 169 11 15 chr13 11610568 11610841 -90262328 - AluJb SINE Alu -11 301 30 7099 159 29 30 chr13 11610841 11611015 -90262154 - L1MA4 LINE L1 -2235 4065 3892 800 199 47 121 chr13 11611023 11611184 -90261985 - L1MB7 LINE L1 -891 5255 5128 203 88 29 0 chr13 11611184 11611218 -90261951 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 800 199 47 121 chr13 11611218 11611378 -90261791 - L1MB7 LINE L1 -1018 5128 4958 2327 102 0 3 chr13 11611494 11611797 -90261372 - AluSx SINE Alu -10 302 1 715 302 117 71 chr13 11612022 11612249 -90260920 - L1MEd LINE L1 -4745 1565 1350 1448 173 16 70 chr13 11612249 11612423 -90260746 - AluJb SINE Alu -17 295 144 2154 117 7 3 chr13 11612423 11612714 -90260455 - AluSq SINE Alu -21 292 1 1448 173 16 70 chr13 11612714 11612851 -90260318 - AluJb SINE Alu -168 144 1 715 302 117 71 chr13 11612851 11613919 -90259250 - L1MEd LINE L1 -4960 1350 148 2053 143 0 0 chr13 11613919 11614235 -90258934 - AluSx SINE Alu 0 316 1 715 302 117 71 chr13 11614235 11614380 -90258789 - L1MEd LINE L1 -6162 148 11 181 147 0 0 chr13 11615468 11615502 -90257667 + L3 LINE CR1 680 713 -864 971 184 11 6 chr13 11615647 11615821 -90257348 - FAM SINE Alu 0 175 1 626 281 45 25 chr13 11616216 11616458 -90256711 + MIR SINE MIR 5 251 -11 23 54 0 0 chr13 11616700 11616737 -90256432 + AT_rich Low_complexity Low_complexity 1 37 0 1369 113 0 0 chr13 11618151 11618328 -90254841 - AluSq SINE Alu -136 177 1 642 133 0 10 chr13 11618356 11618454 -90254715 + AluS SINE Alu 3 99 -213 198 0 0 0 chr13 11618482 11618504 -90254665 + (A)n Simple_repeat Simple_repeat 1 22 0 551 236 34 14 chr13 11618506 11618654 -90254515 - L2 LINE L2 -725 2589 2439 1705 176 14 0 chr13 11618656 11618940 -90254229 + AluJb SINE Alu 1 288 -24 803 224 244 60 chr13 11619105 11619601 -90253568 - MLT1G1 LTR MaLR 0 595 9 1852 218 124 34 chr13 11619659 11620334 -90252835 - L2 LINE L2 -986 2328 1593 195 234 160 11 chr13 11620377 11620471 -90252698 - L2 LINE L2 -1812 1502 1395 * 284 304 56 16 chr13 11620446 11620571 -90252598 + MIR SINE MIR 115 244 -18 403 282 36 0 chr13 11620843 11620953 -90252216 - L1ME3A LINE L1 -24 6146 6033 402 57 0 0 chr13 11622221 11622274 -90250895 + (CA)n Simple_repeat Simple_repeat 2 54 0 442 211 33 0 chr13 11625476 11625566 -90247603 + MLT1C LTR MaLR 373 465 -2 4060 163 42 42 chr13 11626228 11626963 -90246206 - L1MB8 LINE L1 0 6178 5441 1515 160 70 4 chr13 11626963 11627219 -90245950 - AluJb SINE Alu -39 273 1 4060 163 42 42 chr13 11627219 11627294 -90245875 - L1MB8 LINE L1 -736 5442 5368 392 258 199 7 chr13 11627296 11627384 -90245785 + MER58A DNA MER1_type 43 113 -2307 1426 133 55 0 chr13 11627384 11627602 -90245567 - MER30 DNA MER1_type 0 230 1 392 258 199 7 chr13 11627602 11627664 -90245505 + MER58A DNA MER1_type 113 222 -2 23 0 0 0 chr13 11629301 11629324 -90243845 + AT_rich Low_complexity Low_complexity 1 23 0 2400 54 0 14 chr13 11629489 11629784 -90243385 - AluY SINE Alu -20 291 1 267 287 23 0 chr13 11629848 11629935 -90243234 - MER5A DNA MER1_type -85 104 16 207 340 20 0 chr13 11630894 11630994 -90242175 - MIR3 SINE MIR -9 199 98 2505 93 0 0 chr13 11631590 11631902 -90241267 - AluSx SINE Alu 0 312 1 291 342 60 0 chr13 11632070 11632254 -90240915 + MIR SINE MIR 36 230 -32 543 261 100 66 chr13 11632491 11632718 -90240451 + L1MC4 LINE L1 7560 7809 -233 1643 153 4 0 chr13 11632718 11632967 -90240202 - AluJo SINE Alu -61 251 2 543 261 100 66 chr13 11632967 11633149 -90240020 + L1MC4 LINE L1 7809 7983 -59 547 97 11 11 chr13 11633164 11633257 -90239912 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 2201 129 0 0 chr13 11634680 11634990 -90238179 - AluSx SINE Alu -2 310 1 201 74 0 0 chr13 11635600 11635627 -90237542 + (A)n Simple_repeat Simple_repeat 1 27 0 1213 199 5 9 chr13 11635628 11635849 -90237320 + AluJb SINE Alu 3 222 -90 536 227 123 6 chr13 11636778 11636941 -90236228 + MIR SINE MIR 71 252 -10 2065 136 0 3 chr13 11636984 11637286 -90235883 + AluSx SINE Alu 1 301 -11 242 303 56 56 chr13 11637562 11637740 -90235429 + MIR SINE MIR 39 216 -46 2147 98 56 0 chr13 11638347 11638634 -90234535 - AluSx SINE Alu -9 303 1 990 111 13 20 chr13 11639674 11639827 -90233342 - FRAM SINE Alu -17 159 8 24 0 0 0 chr13 11642015 11642039 -90231130 + AT_rich Low_complexity Low_complexity 1 24 0 689 184 19 111 chr13 11642092 11642145 -90231024 + MER5A DNA MER1_type 1 57 -132 1802 70 9 0 chr13 11642145 11642373 -90230796 - MER30 DNA MER1_type 0 230 1 689 184 19 111 chr13 11642373 11642526 -90230643 + MER5A DNA MER1_type 57 188 -1 514 299 95 30 chr13 11644913 11645081 -90228088 - MIR SINE MIR -13 249 61 2411 87 3 0 chr13 11645081 11645379 -90227790 + AluSp SINE Alu 1 299 -14 514 299 95 30 chr13 11645379 11645441 -90227728 - MIR SINE MIR -201 61 4 264 272 60 0 chr13 11645680 11645767 -90227402 + MIR SINE MIR 46 140 -68 383 280 82 44 chr13 11647055 11647237 -90225932 + MIR3 SINE MIR 6 194 -14 2284 88 7 10 chr13 11647244 11647550 -90225619 + AluSq SINE Alu 1 305 -8 195 204 0 0 chr13 11647821 11647865 -90225304 + (ATG)n Simple_repeat Simple_repeat 2 45 0 588 298 34 0 chr13 11647895 11648073 -90225096 - MIR SINE MIR -74 188 5 2434 79 3 0 chr13 11648232 11648536 -90224633 - AluSx SINE Alu -7 305 1 180 0 0 0 chr13 11649468 11649488 -90223681 + (A)n Simple_repeat Simple_repeat 1 20 0 990 198 154 8 chr13 11649753 11650000 -90223169 - MER58B DNA MER1_type -1 340 58 32 43 0 0 chr13 11652096 11652142 -90221027 + AT_rich Low_complexity Low_complexity 1 46 0 230 211 122 67 chr13 11652192 11652282 -90220887 - HAL1b LINE L1 -61 1287 1193 265 60 0 40 chr13 11652301 11652351 -90220818 + (TA)n Simple_repeat Simple_repeat 1 48 0 2075 103 69 0 chr13 11652414 11652705 -90220464 - AluSx SINE Alu 0 312 2 409 230 122 14 chr13 11652769 11652917 -90220252 - L1MC/D LINE L1 -2061 5747 5584 252 240 53 0 chr13 11652996 11653071 -90220098 + Charlie7 DNA MER1_type 1676 1754 -858 2167 104 3 3 chr13 11653152 11653441 -90219728 - AluSg SINE Alu -21 289 1 1850 143 17 30 chr13 11653656 11653956 -90219213 + AluJo SINE Alu 1 296 -16 408 212 71 0 chr13 11654381 11654495 -90218674 + MIR SINE MIR 72 192 -62 266 343 30 47 chr13 11656153 11656389 -90216780 - L3b LINE CR1 -172 1411 1180 2309 112 0 0 chr13 11658447 11658752 -90214417 - AluSx SINE Alu -7 305 1 227 286 110 22 chr13 11660567 11660658 -90212511 + L2 LINE L2 3158 3256 -16 284 368 66 7 chr13 11660716 11660852 -90212317 + L2 LINE L2 3121 3264 -8 2126 115 0 0 chr13 11661657 11661935 -90211234 + AluSx SINE Alu 21 298 -14 195 235 0 39 chr13 11662993 11663044 -90210125 - L2 LINE L2 0 3272 3224 776 266 82 20 chr13 11663052 11663296 -90209873 + MIR SINE MIR 4 262 0 2294 119 0 0 chr13 11663576 11663887 -90209282 - AluSq SINE Alu -2 311 1 529 314 57 13 chr13 11664307 11664536 -90208633 + MIR SINE MIR 3 241 -21 243 88 0 0 chr13 11664639 11664673 -90208496 + (TC)n Simple_repeat Simple_repeat 1 34 0 2310 112 0 13 chr13 11664673 11664987 -90208182 - AluSx SINE Alu -2 310 1 2148 108 3 29 chr13 11664997 11665313 -90207856 - AluSq SINE Alu -5 308 1 2534 74 0 0 chr13 11665335 11665645 -90207524 - AluY SINE Alu 0 311 2 458 257 44 112 chr13 11665645 11666113 -90207056 + L2 LINE L2 2588 3020 -252 188 232 0 101 chr13 11666201 11666270 -90206899 + L2 LINE L2 3197 3258 -14 186 43 0 0 chr13 11666274 11666297 -90206872 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1869 162 13 3 chr13 11666498 11666807 -90206362 - AluJb SINE Alu 0 312 1 1702 159 36 0 chr13 11668142 11668418 -90204751 + AluJo SINE Alu 1 286 -26 201 132 0 0 chr13 11668418 11668456 -90204713 + (GA)n Simple_repeat Simple_repeat 1 38 0 301 295 152 0 chr13 11668837 11668942 -90204227 - L2 LINE L2 -225 3047 2927 1967 106 25 18 chr13 11668945 11669229 -90203940 + AluSx SINE Alu 1 286 -26 909 234 81 0 chr13 11669434 11669656 -90203513 - MIR SINE MIR -15 247 8 440 336 169 14 chr13 11669780 11670200 -90202969 + L2 LINE L2 2476 2960 -354 2350 69 0 26 chr13 11670332 11670636 -90202533 + AluY SINE Alu 1 296 -15 203 283 162 0 chr13 11670671 11670770 -90202399 - L2 LINE L2 -9 3263 3149 397 299 26 0 chr13 11670806 11670923 -90202246 + L2 LINE L2 3194 3313 0 498 75 0 0 chr13 11671130 11671197 -90201972 + (CA)n Simple_repeat Simple_repeat 2 68 0 246 179 45 75 chr13 11672462 11672529 -90200640 + MIR SINE MIR 111 175 -87 558 165 0 0 chr13 11672567 11672670 -90200499 + CT-rich Low_complexity Low_complexity 4 106 0 189 364 148 12 chr13 11672882 11673044 -90200125 + L2 LINE L2 3029 3212 -60 567 254 171 31 chr13 11673586 11673814 -90199355 - MIR SINE MIR 0 262 3 471 274 44 27 chr13 11673848 11674062 -90199107 + MIR SINE MIR 23 240 -22 2397 96 0 0 chr13 11674995 11675297 -90197872 + AluSx SINE Alu 1 302 -10 480 301 5 61 chr13 11676041 11676254 -90196915 - L3 LINE CR1 -195 1382 1182 491 334 51 13 chr13 11676845 11677074 -90196095 + MIR SINE MIR 15 252 -10 206 322 45 118 chr13 11677076 11677390 -90195779 - L2 LINE L2 -51 3221 2931 204 115 39 58 chr13 11677838 11677890 -90195279 + MIR SINE MIR 67 117 -91 264 122 0 0 chr13 11679553 11679594 -90193575 + (T)n Simple_repeat Simple_repeat 1 41 0 499 281 102 0 chr13 11679746 11679913 -90193256 - MIR SINE MIR 0 262 79 430 260 281 5 chr13 11679984 11680180 -90192989 + MIR SINE MIR 2 251 -11 5759 147 19 16 chr13 11680841 11681534 -90191635 + L1MA6 LINE L1 4737 5427 -873 2240 111 3 0 chr13 11681534 11681832 -90191337 + AluSx SINE Alu 1 299 -13 5759 147 19 16 chr13 11681832 11682694 -90190475 + L1MA6 LINE L1 5427 6295 -5 2238 96 0 16 chr13 11682703 11683015 -90190154 + AluSg SINE Alu 1 307 -3 422 260 50 0 chr13 11683102 11683202 -90189967 - L2 LINE L2 -1 3312 3208 236 151 314 0 chr13 11683413 11683499 -90189670 - L1MC/D LINE L1 -2340 5468 5356 309 359 91 36 chr13 11683525 11683909 -90189260 - L2 LINE L2 -485 2829 2425 302 257 48 48 chr13 11683927 11684032 -90189137 + MIR SINE MIR 86 190 -72 926 113 0 57 chr13 11684242 11684383 -90188786 + FLAM_C SINE Alu 1 133 0 1998 119 28 0 chr13 11685327 11685612 -90187557 - AluSx SINE Alu -19 293 1 865 267 52 82 chr13 11685616 11685917 -90187252 - L1MC/D LINE L1 -762 5384 5076 1049 179 0 0 chr13 11685917 11686079 -90187090 - FRAM SINE Alu -2 164 3 865 267 52 82 chr13 11686079 11686757 -90186412 - L1MC/D LINE L1 -1070 5076 4542 353 95 222 0 chr13 11686757 11686820 -90186349 + MER116 DNA Mariner 1 77 -3 865 267 52 82 chr13 11686820 11686983 -90186186 - L1MC/D LINE L1 -1604 4542 4376 2302 92 3 0 chr13 11687064 11687356 -90185813 - AluSx SINE Alu -19 293 1 745 257 40 71 chr13 11687606 11687902 -90185267 - MER102a DNA MER1_type -6 324 38 246 360 134 57 chr13 11687978 11688177 -90184992 + L2 LINE L2 2804 2986 -286 2293 95 0 3 chr13 11688177 11688473 -90184696 - AluSq SINE Alu -16 297 3 246 360 134 57 chr13 11688473 11688692 -90184477 + L2 LINE L2 2986 3254 -18 222 339 0 0 chr13 11689565 11689627 -90183542 + L2 LINE L2 2994 3055 -217 2173 99 7 0 chr13 11689837 11690156 -90183013 - AluSq SINE Alu 0 321 1 708 123 0 0 chr13 11690245 11690359 -90182810 + (ATG)n Simple_repeat Simple_repeat 1 114 0 2383 93 0 0 chr13 11690408 11690709 -90182460 - AluSq SINE Alu -12 301 1 2462 72 0 7 chr13 11691089 11691394 -90181775 - AluY SINE Alu -8 303 1 423 226 12 0 chr13 11694185 11694269 -90178900 + L2 LINE L2 3188 3272 0 2341 95 0 0 chr13 11694634 11694930 -90178239 - AluSc SINE Alu -13 296 1 510 332 25 51 chr13 11695098 11695333 -90177836 + MIR SINE MIR 21 249 -13 504 219 34 8 chr13 11695340 11695459 -90177710 + MIR SINE MIR 131 252 -10 2101 124 30 0 chr13 11695644 11695942 -90177227 + AluSx SINE Alu 1 307 -5 359 260 68 62 chr13 11697445 11697591 -90175578 - MIR SINE MIR -66 196 50 2155 128 0 6 chr13 11697858 11698170 -90174999 + AluSx SINE Alu 1 310 -2 377 185 102 28 chr13 11698295 11698403 -90174766 + MIR3 SINE MIR 83 198 -10 242 210 67 134 chr13 11698491 11698610 -90174559 - L2 LINE L2 0 3313 3203 298 335 120 38 chr13 11699075 11699341 -90173828 - L2 LINE L2 -553 2761 2474 29 60 0 0 chr13 11699627 11699677 -90173492 + AT_rich Low_complexity Low_complexity 1 50 0 2369 74 3 10 chr13 11699965 11700263 -90172906 + AluY SINE Alu 1 296 -15 1085 131 11 23 chr13 11700263 11700439 -90172730 + AluSc SINE Alu 132 305 -4 867 164 7 33 chr13 11700439 11700591 -90172578 - MER2 DNA MER2_type -192 153 6 2116 120 0 46 chr13 11700735 11701060 -90172109 + AluSx SINE Alu 1 310 -2 319 245 10 10 chr13 11702292 11702390 -90170779 + (CAATA)n Simple_repeat Simple_repeat 3 100 0 1971 144 0 3 chr13 11706988 11707280 -90165889 - AluSx SINE Alu -21 291 1 620 141 0 10 chr13 11707848 11707947 -90165222 + MER4A LTR ERV1 1 98 -566 2151 97 169 29 chr13 11707947 11708296 -90164873 + MER4A LTR ERV1 261 658 -6 1831 171 0 7 chr13 11710161 11710471 -90162698 - AluJb SINE Alu -4 308 1 1645 271 73 38 chr13 11711239 11711879 -90161290 + MER115 DNA AcHobo 1 693 0 889 172 155 61 chr13 11711956 11712252 -90160917 + MER33 DNA MER1_type 1 324 0 249 276 0 40 chr13 11712601 11712677 -90160492 + MIR3 SINE MIR 125 197 -11 246 277 134 27 chr13 11713223 11713335 -90159834 - L2 LINE L2 -22 3291 3168 861 186 0 0 chr13 11714142 11714271 -90158898 - FLAM_A SINE Alu -4 129 1 396 0 0 0 chr13 11714335 11714379 -90158790 + (TG)n Simple_repeat Simple_repeat 2 45 0 248 261 125 34 chr13 11715305 11715393 -90157776 - L2 LINE L2 -8 3264 3169 676 311 28 16 chr13 11716442 11716690 -90156479 - MIR SINE MIR -10 252 2 29 84 0 0 chr13 11717034 11717105 -90156064 + AT_rich Low_complexity Low_complexity 1 71 0 1774 128 0 0 chr13 11717529 11717772 -90155397 + AluSq SINE Alu 1 243 -70 246 32 0 0 chr13 11717772 11717803 -90155366 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 201 116 23 23 chr13 11719127 11719170 -90153999 + (TA)n Simple_repeat Simple_repeat 1 43 0 279 114 0 0 chr13 11719332 11719376 -90153793 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1946 110 33 47 chr13 11719379 11719679 -90153490 - AluSx SINE Alu -16 296 1 218 360 46 39 chr13 11719684 11719837 -90153332 - MIR SINE MIR -62 200 47 2219 122 0 6 chr13 11720347 11720659 -90152510 + AluSg SINE Alu 1 310 0 2475 103 0 0 chr13 11721323 11721635 -90151534 + AluSx SINE Alu 1 312 0 289 276 92 0 chr13 11721976 11722063 -90151106 - MER5B DNA MER1_type 0 178 84 291 28 0 0 chr13 11723214 11723250 -90149919 + (TTA)n Simple_repeat Simple_repeat 1 36 0 809 148 41 0 chr13 11723250 11723372 -90149797 - FRAM SINE Alu -30 146 20 458 239 6 154 chr13 11723851 11724209 -90148960 - L1MC5 LINE L1 -56 7905 7647 1777 164 48 0 chr13 11725928 11726221 -90146948 - AluJb SINE Alu -5 307 1 536 282 31 37 chr13 11727264 11727481 -90145688 - MIR SINE MIR -19 243 37 2273 87 23 3 chr13 11727856 11728155 -90145014 + AluSp SINE Alu 1 305 -8 2041 110 4 0 chr13 11728863 11729307 -90143862 - AluSx SINE Alu 0 445 1 878 38 0 0 chr13 11729314 11729419 -90143750 - AluSg/x SINE Alu -3 307 203 201 360 67 11 chr13 11730403 11730492 -90142677 + MIR SINE MIR 1 94 -168 260 258 30 0 chr13 11731124 11731190 -90141979 + MIR SINE MIR 193 260 -2 233 372 43 11 chr13 11731222 11731316 -90141853 + L2 LINE L2 3165 3261 -11 2257 85 0 4 chr13 11731786 11732090 -90141079 + AluSp SINE Alu 3 305 0 734 236 82 52 chr13 11732642 11732875 -90140294 - MIR SINE MIR -21 241 2 370 288 92 26 chr13 11733102 11733255 -90139914 + MIR SINE MIR 85 247 -15 299 238 99 10 chr13 11734113 11734214 -90138955 + MIR SINE MIR 32 141 -67 541 170 217 9 chr13 11734258 11734364 -90138805 - FLAM_A SINE Alu -14 128 1 1568 137 47 36 chr13 11735161 11735459 -90137710 - AluJb SINE Alu 0 301 1 250 278 78 26 chr13 11735500 11735615 -90137554 + MIR SINE MIR 109 229 -33 2331 80 0 7 chr13 11736184 11736483 -90136686 + AluSc SINE Alu 1 297 -12 308 289 67 0 chr13 11738625 11738729 -90134440 - MIR SINE MIR -68 140 30 249 271 47 47 chr13 11740389 11740496 -90132673 - MIR SINE MIR -44 218 112 2006 136 40 0 chr13 11740702 11741003 -90132166 - AluSq SINE Alu 0 313 1 21 0 0 0 chr13 11741012 11741033 -90132136 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 11742484 11742512 -90130657 + AT_rich Low_complexity Low_complexity 1 28 0 311 328 147 58 chr13 11743172 11743498 -90129671 - L2 LINE L2 0 3272 2918 181 323 16 16 chr13 11743615 11743677 -90129492 + MIR SINE MIR 34 95 -113 382 231 154 19 chr13 11745458 11745614 -90127555 + MIR3 SINE MIR 27 203 -5 233 275 117 17 chr13 11748404 11748524 -90124645 - MIR SINE MIR -13 249 118 1046 161 118 0 chr13 11749432 11749618 -90123551 - MER3 DNA MER1_type -1 208 1 2337 94 0 0 chr13 11751496 11751795 -90121374 + AluSx SINE Alu 1 299 -13 598 290 50 18 chr13 11753665 11753886 -90119283 - MIR SINE MIR -21 241 14 261 157 39 0 chr13 11754294 11754345 -90118824 - L2 LINE L2 -11 3261 3209 1450 218 65 25 chr13 11756395 11756798 -90116371 + MLT1C LTR MaLR 3 421 -46 330 227 27 0 chr13 11757184 11757259 -90115910 - MIR3 SINE MIR -54 154 78 646 214 209 0 chr13 11757538 11757744 -90115425 + MIR SINE MIR 14 262 0 3831 153 91 15 chr13 11757774 11758433 -90114736 + MER50 LTR ERV1 1 709 -25 917 111 0 52 chr13 11758555 11758690 -90114479 + FLAM_C SINE Alu 2 129 -4 25 31 0 0 chr13 11758778 11758810 -90114359 + AT_rich Low_complexity Low_complexity 1 32 0 306 50 0 0 chr13 11759597 11759637 -90113532 + (CA)n Simple_repeat Simple_repeat 2 41 0 8338 208 38 41 chr13 11760774 11761055 -90112114 + L1M4 LINE L1 2311 2591 -3555 2014 138 7 0 chr13 11761055 11761345 -90111824 + AluSx SINE Alu 1 292 -20 8338 208 38 41 chr13 11761345 11762090 -90111079 + L1M4 LINE L1 2591 3337 -2809 2020 114 7 0 chr13 11762090 11762363 -90110806 + AluSx SINE Alu 1 275 -37 8338 208 38 41 chr13 11762363 11762557 -90110612 + L1M4 LINE L1 3337 3530 -2616 234 0 0 0 chr13 11762557 11762583 -90110586 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8338 208 38 41 chr13 11762583 11763759 -90109410 + L1M4 LINE L1 3530 4702 -1444 1047 16 0 0 chr13 11763869 11763990 -90109179 + (TTTCC)n Simple_repeat Simple_repeat 2 122 0 2052 122 4 0 chr13 11763991 11764270 -90108899 - AluSq SINE Alu -32 281 2 602 301 64 30 chr13 11764327 11764593 -90108576 - L3 LINE CR1 -647 930 656 492 241 196 77 chr13 11764633 11764919 -90108250 - L2 LINE L2 -1 3271 2952 246 237 110 68 chr13 11765069 11765187 -90107982 - MIR SINE MIR -21 241 119 270 254 0 0 chr13 11765330 11765385 -90107784 + MIR SINE MIR 61 115 -147 6055 165 33 44 chr13 11765422 11767362 -90105807 + L1MC1 LINE L1 4066 5963 -370 2389 96 0 0 chr13 11767362 11767665 -90105504 + AluSg SINE Alu 1 303 -7 6055 165 33 44 chr13 11767665 11768022 -90105147 + L1MC1 LINE L1 5963 6323 -10 201 121 0 0 chr13 11768024 11768057 -90105112 + (CA)n Simple_repeat Simple_repeat 2 34 0 389 271 90 8 chr13 11768058 11768180 -90104989 + MIR SINE MIR 128 259 -3 282 234 62 0 chr13 11768187 11768251 -90104918 - MIR SINE MIR -155 107 40 2053 120 40 7 chr13 11768770 11769071 -90104098 - AluSx SINE Alu -1 311 1 303 28 0 0 chr13 11771644 11771680 -90101489 + (CA)n Simple_repeat Simple_repeat 2 37 0 512 250 18 43 chr13 11771712 11771815 -90101354 + MER112 DNA MER1_type 69 168 -92 1002 202 18 0 chr13 11771815 11771983 -90101186 - FAM SINE Alu -4 171 1 512 250 18 43 chr13 11771983 11772043 -90101126 + MER112 DNA MER1_type 168 228 -32 401 95 27 27 chr13 11772416 11772490 -90100679 + Alu SINE Alu 238 311 0 203 271 119 0 chr13 11773859 11773918 -90099251 + MIR SINE MIR 125 190 -72 180 242 0 129 chr13 11774149 11774211 -90098958 + L2 LINE L2 3239 3292 -21 187 281 0 0 chr13 11774813 11774870 -90098299 + L2 LINE L2 3257 3313 0 391 323 19 7 chr13 11775197 11775352 -90097817 - MER117 DNA MER1_type 0 197 41 384 246 25 49 chr13 11775354 11775476 -90097693 - L2 LINE L2 0 3313 3195 2057 119 26 3 chr13 11776407 11776710 -90096459 + AluSx SINE Alu 1 310 -2 391 241 11 0 chr13 11777472 11777559 -90095610 - L2 LINE L2 -31 3241 3154 237 304 43 22 chr13 11778939 11779031 -90094138 + MIR SINE MIR 48 141 -67 444 252 34 42 chr13 11779251 11779370 -90093799 + MIR3 SINE MIR 75 192 -16 2005 174 137 0 chr13 11779376 11779749 -90093420 + MSTB LTR MaLR 1 424 -2 299 273 23 0 chr13 11779841 11779929 -90093240 + CT-rich Low_complexity Low_complexity 1 90 0 302 295 48 23 chr13 11780241 11780384 -90092785 + MIR SINE MIR 18 133 -75 1951 127 3 10 chr13 11780591 11780883 -90092286 - AluSx SINE Alu -9 303 14 21 36 0 0 chr13 11780888 11780916 -90092253 + AT_rich Low_complexity Low_complexity 1 28 0 2310 86 0 0 chr13 11781523 11781828 -90091341 - AluSq SINE Alu 0 310 6 279 287 103 29 chr13 11783550 11783686 -90089483 + MIR3 SINE MIR 61 206 -2 2662 170 32 54 chr13 11783744 11784197 -90088972 + L1MB8 LINE L1 5293 5754 -424 2348 103 0 0 chr13 11784197 11784507 -90088662 + AluSx SINE Alu 1 310 -2 2662 170 32 54 chr13 11784507 11784519 -90088650 + L1MB8 LINE L1 5754 5765 -413 1256 83 0 6 chr13 11784519 11784699 -90088470 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2662 170 32 54 chr13 11784699 11784826 -90088343 + L1MB8 LINE L1 5765 5873 -305 735 205 0 58 chr13 11784830 11784986 -90088183 + MLT1B LTR MaLR 192 338 -52 1942 133 18 4 chr13 11785008 11785314 -90087855 + AluSx SINE Alu 1 310 0 363 23 0 0 chr13 11785315 11785359 -90087810 + (CA)n Simple_repeat Simple_repeat 1 44 0 1839 98 16 112 chr13 11785359 11785725 -90087444 + L1MB7 LINE L1 5854 6184 0 216 135 0 0 chr13 11786939 11786976 -90086193 + (CA)n Simple_repeat Simple_repeat 1 37 0 249 310 60 9 chr13 11791125 11791241 -90081928 - L2 LINE L2 -59 3254 3133 188 333 58 33 chr13 11791295 11791415 -90081754 - L2 LINE L2 -179 3093 2971 393 22 0 0 chr13 11792272 11792318 -90080851 + (CA)n Simple_repeat Simple_repeat 2 47 0 306 172 0 17 chr13 11792396 11792454 -90080715 - L2 LINE L2 -1 3312 3256 1866 106 98 0 chr13 11793002 11793266 -90079903 + AluSp SINE Alu 2 291 -22 198 0 0 0 chr13 11793297 11793319 -90079850 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr13 11793323 11793356 -90079813 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 180 375 0 0 chr13 11794778 11794834 -90078335 + MIR SINE MIR 47 102 -160 200 351 37 12 chr13 11795598 11795703 -90077466 + MIR SINE MIR 30 133 -75 1427 36 24 0 chr13 11795753 11795919 -90077250 + L1PA4 LINE L1 5985 6154 -1 25 31 0 0 chr13 11795944 11795976 -90077193 + AT_rich Low_complexity Low_complexity 1 32 0 230 0 33 0 chr13 11796273 11796303 -90076866 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 610 253 58 25 chr13 11796469 11796882 -90076287 + MLT1H LTR MaLR 79 549 0 1012 159 23 0 chr13 11797732 11797908 -90075261 + MER5A DNA MER1_type 1 180 -9 831 225 18 0 chr13 11797908 11798077 -90075092 - MER5B DNA MER1_type -4 174 3 2058 141 0 7 chr13 11798945 11799242 -90073927 + AluSx SINE Alu 1 295 -17 265 179 0 0 chr13 11799365 11799421 -90073748 - MER5A DNA MER1_type -131 58 3 189 374 112 52 chr13 11800162 11800547 -90072622 - L2 LINE L2 0 3272 2865 390 295 79 7 chr13 11800901 11801040 -90072129 + MIR3 SINE MIR 41 189 -19 245 223 64 64 chr13 11802595 11802689 -90070480 - MIR3 SINE MIR 0 208 115 21 57 0 0 chr13 11804417 11804452 -90068717 + AT_rich Low_complexity Low_complexity 1 35 0 383 292 141 73 chr13 11805506 11806054 -90067115 + L1M2 LINE L1 444 1028 -5821 216 330 71 0 chr13 11809145 11809257 -90063912 - L3 LINE CR1 -298 1279 1160 550 325 77 21 chr13 11809694 11810032 -90063137 - L3 LINE CR1 -572 1005 649 276 100 0 0 chr13 11810041 11810081 -90063088 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 252 159 63 63 chr13 11810586 11810649 -90062520 - L1ME4a LINE L1 -91 6030 5968 195 245 113 53 chr13 11811543 11811694 -90061475 - L2 LINE L2 -815 2499 2340 778 169 0 0 chr13 11811769 11811908 -90061261 + FLAM_A SINE Alu 1 139 0 1634 209 62 84 chr13 11812112 11812403 -90060766 + L1M4 LINE L1 4751 5026 -1120 1622 173 14 28 chr13 11812403 11812692 -90060477 - AluJb SINE Alu -27 285 1 1634 209 62 84 chr13 11812692 11812936 -90060233 + L1M4 LINE L1 5026 5274 -872 259 209 45 9 chr13 11812936 11813046 -90060123 + (TA)n Simple_repeat Simple_repeat 2 115 0 4680 173 42 5 chr13 11813059 11813982 -90059187 + L1MB7 LINE L1 5221 6182 -2 1698 168 46 11 chr13 11814205 11814490 -90058679 + AluJo SINE Alu 1 295 -17 221 0 35 0 chr13 11815149 11815178 -90057991 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 346 175 25 0 chr13 11815844 11815924 -90057245 + GA-rich Low_complexity Low_complexity 3 84 0 422 298 77 17 chr13 11816035 11816216 -90056953 - MIR3 SINE MIR 0 208 17 1934 128 4 4 chr13 11816483 11816790 -90056379 + AluSx SINE Alu 1 307 0 654 292 86 22 chr13 11817173 11817488 -90055681 - MER102b DNA MER1_type -2 339 5 207 303 185 43 chr13 11817580 11817742 -90055427 + MIR SINE MIR 20 204 -58 398 285 118 57 chr13 11817879 11818125 -90055044 - L3 LINE CR1 -137 1440 1180 273 263 158 0 chr13 11818147 11818242 -90054927 - MIR SINE MIR -65 197 88 1603 111 36 4 chr13 11818455 11818680 -90054489 - AluSx SINE Alu -80 232 1 321 140 0 0 chr13 11819570 11819627 -90053542 - AluJo SINE Alu -3 299 243 994 182 39 54 chr13 11819627 11819830 -90053339 - AluJo SINE Alu -106 206 7 700 167 0 0 chr13 11820006 11820114 -90053055 - FLAM_C SINE Alu -18 125 18 192 391 0 0 chr13 11820348 11820417 -90052752 + L2 LINE L2 3183 3251 -62 1000 173 0 53 chr13 11820569 11820777 -90052392 + AluJo SINE Alu 13 209 -103 320 284 195 12 chr13 11821231 11821372 -90051797 - L1ME4a LINE L1 -33 6088 5974 2218 112 0 10 chr13 11821372 11821676 -90051493 + AluSc SINE Alu 1 301 -8 320 284 195 12 chr13 11821676 11821791 -90051378 - L1ME4a LINE L1 -147 5974 5785 258 284 79 48 chr13 11821968 11822197 -90050972 - L1M2 LINE L1 -758 5533 5298 2220 114 10 0 chr13 11822299 11822607 -90050562 - AluSq SINE Alu -2 311 1 1225 274 102 26 chr13 11822991 11823491 -90049678 + L2 LINE L2 2150 2695 -619 2362 92 0 0 chr13 11823491 11823784 -90049385 - AluY SINE Alu -18 293 1 1225 274 102 26 chr13 11823784 11823824 -90049345 + L2 LINE L2 2695 2731 -583 657 281 45 72 chr13 11823895 11824269 -90048900 + L2 LINE L2 2950 3313 0 2478 55 0 39 chr13 11824363 11824674 -90048495 - AluY SINE Alu -12 299 1 1546 189 10 32 chr13 11825096 11825408 -90047761 + AluJo SINE Alu 1 305 -7 1578 168 55 34 chr13 11825649 11825941 -90047228 - AluJb SINE Alu -10 302 5 347 296 88 6 chr13 11826085 11826244 -90046925 + L1MC4a LINE L1 5711 5882 -1926 294 301 44 0 chr13 11826386 11826499 -90046670 + HAL1 LINE L1 2377 2494 -13 27 0 0 0 chr13 11826545 11826572 -90046597 + AT_rich Low_complexity Low_complexity 1 27 0 874 204 0 0 chr13 11826572 11826724 -90046445 + FRAM SINE Alu 2 153 -23 1753 176 20 0 chr13 11826768 11827064 -90046105 + AluJo SINE Alu 1 302 -10 1923 209 52 8 chr13 11827236 11827624 -90045545 + MER47B DNA MER2_type 2 406 -12 232 146 24 0 chr13 11827666 11827707 -90045462 - MER47B DNA MER2_type -364 54 13 1252 178 38 8 chr13 11827926 11828006 -90045163 + MER7A DNA MER2_type 16 92 -2946 2115 114 6 29 chr13 11828006 11828322 -90044847 - AluSc SINE Alu 0 309 1 1252 178 38 8 chr13 11828322 11828477 -90044692 + MER7A DNA MER2_type 92 256 -90 418 198 99 0 chr13 11828498 11828599 -90044570 + MLT1B LTR MaLR 241 351 -39 279 54 0 0 chr13 11828691 11828728 -90044441 + (GA)n Simple_repeat Simple_repeat 1 37 0 258 169 0 31 chr13 11828734 11828799 -90044370 + (TA)n Simple_repeat Simple_repeat 2 64 0 2027 116 30 26 chr13 11828957 11829260 -90043909 + AluSx SINE Alu 1 304 -8 411 253 0 0 chr13 11829260 11829347 -90043822 + AluJo/F(R)AM SINE Alu 134 220 -92 1931 147 0 32 chr13 11829391 11829703 -90043466 + AluSx SINE Alu 1 302 -10 647 230 98 10 chr13 11829751 11829955 -90043214 + L1MD2 LINE L1 6135 6356 -3 2099 114 17 0 chr13 11830000 11830299 -90042870 + AluSg SINE Alu 1 304 -6 272 154 0 0 chr13 11830366 11830405 -90042764 + 5S rRNA rRNA 1 39 -82 2563 55 7 3 chr13 11830503 11830813 -90042356 + AluY SINE Alu 1 311 0 256 264 35 11 chr13 11830852 11830939 -90042230 + L2 LINE L2 3186 3274 -39 326 210 90 20 chr13 11831386 11831486 -90041683 - MIR SINE MIR -115 147 41 600 151 0 86 chr13 11831780 11831919 -90041250 + FLAM_A SINE Alu 16 142 0 620 175 0 25 chr13 11832359 11832479 -90040690 + AluJb SINE Alu 51 167 -145 21 0 0 0 chr13 11832485 11832506 -90040663 + AT_rich Low_complexity Low_complexity 1 21 0 728 200 8 0 chr13 11832550 11832680 -90040489 + FLAM_C SINE Alu 2 132 -11 2196 98 26 0 chr13 11833256 11833561 -90039608 + AluSp SINE Alu 1 313 0 256 225 6 144 chr13 11833652 11833712 -90039457 - MIR3 SINE MIR -34 174 107 2636 35 3 6 chr13 11833712 11834024 -90039145 + AluY SINE Alu 1 311 0 256 225 6 144 chr13 11834024 11834123 -90039046 - MIR3 SINE MIR -101 107 37 1852 158 4 0 chr13 11834459 11834738 -90038431 - AluJb SINE Alu -32 280 1 717 190 22 3 chr13 11834741 11834899 -90038270 - L1ME1 LINE L1 -2 6332 6017 2011 125 11 0 chr13 11834904 11835183 -90037986 + AluSg SINE Alu 7 288 -22 838 145 8 0 chr13 11835193 11835317 -90037852 + AluSq/x SINE Alu 1 125 -187 981 0 9 0 chr13 11835436 11835545 -90037624 - AluY SINE Alu -201 110 1 855 168 0 0 chr13 11835677 11835808 -90037361 + AluJo/FLAM SINE Alu 1 131 -171 2227 109 0 7 chr13 11835810 11836113 -90037056 + AluSx SINE Alu 1 301 -11 258 314 39 101 chr13 11836283 11836490 -90036679 + L2 LINE L2 328 521 -2793 1968 125 55 0 chr13 11836501 11836629 -90036540 + AluSx SINE Alu 1 120 -192 2318 103 3 0 chr13 11836629 11836929 -90036240 + AluSq SINE Alu 1 301 -12 1968 125 55 0 chr13 11836929 11837089 -90036080 + AluSx SINE Alu 120 305 -7 268 250 109 83 chr13 11837124 11837325 -90035844 - L1ME4a LINE L1 -59 6062 5868 2238 68 0 48 chr13 11837325 11837657 -90035512 + AluY SINE Alu 1 318 0 2325 108 0 0 chr13 11837658 11837955 -90035214 + AluSx SINE Alu 1 297 -15 268 250 109 83 chr13 11837955 11838062 -90035107 - L1ME4a LINE L1 -252 5869 5743 2096 115 30 0 chr13 11838077 11838373 -90034796 - AluSp SINE Alu -7 306 2 2294 103 0 0 chr13 11838374 11838664 -90034505 - AluSg SINE Alu -20 290 1 747 182 8 0 chr13 11838724 11838856 -90034313 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr13 11839395 11839417 -90033752 + AT_rich Low_complexity Low_complexity 1 22 0 1840 150 6 16 chr13 11839642 11839955 -90033214 - AluJo SINE Alu -2 310 1 418 317 35 7 chr13 11841038 11841183 -90031986 + MLT1F1 LTR MaLR 14 162 -431 1072 154 65 25 chr13 11841204 11841405 -90031764 + AluJo SINE Alu 85 293 -19 448 100 67 44 chr13 11841405 11841495 -90031674 + LTR9 LTR ERV1 435 526 -86 254 28 0 28 chr13 11841501 11841537 -90031632 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1370 143 0 14 chr13 11841544 11841760 -90031409 + AluJb SINE Alu 82 294 -18 1234 231 75 32 chr13 11841789 11842071 -90031098 + MLT1F1 LTR MaLR 202 503 -64 2308 102 0 0 chr13 11842071 11842364 -90030805 - AluSx SINE Alu -19 293 1 1234 231 75 32 chr13 11842364 11842427 -90030742 + MLT1F1 LTR MaLR 503 562 -5 180 176 0 0 chr13 11842443 11842477 -90030692 + CT-rich Low_complexity Low_complexity 1 34 0 1828 94 106 8 chr13 11842477 11842742 -90030427 - AluSc SINE Alu -18 291 1 307 191 0 0 chr13 11842742 11842805 -90030364 + MLT1F1 LTR MaLR 500 562 -5 1601 90 98 37 chr13 11842810 11843083 -90030086 - AluSc SINE Alu 0 309 30 2214 96 7 3 chr13 11843270 11843562 -90029607 + AluSc SINE Alu 1 293 -16 334 156 0 0 chr13 11843573 11843632 -90029537 - AluSc SINE Alu -253 50 3 1036 262 166 55 chr13 11843634 11844372 -90028797 - L2 LINE L2 0 3313 2658 1763 154 10 7 chr13 11844372 11844664 -90028505 - AluJb SINE Alu -1 311 19 1036 262 166 55 chr13 11844664 11844699 -90028470 - L2 LINE L2 -655 2658 2628 2337 78 10 3 chr13 11844699 11845005 -90028164 - AluY SINE Alu -3 308 1 1036 262 166 55 chr13 11845005 11845280 -90027889 - L2 LINE L2 -685 2628 2139 989 151 58 10 chr13 11845487 11845693 -90027476 - MER69 DNA AcHobo -1 2525 2310 2145 129 0 7 chr13 11845749 11846058 -90027111 - AluSc SINE Alu -1 308 2 790 30 0 10 chr13 11846303 11846402 -90026767 + L1MB2 LINE L1 6030 6127 -44 2107 115 3 42 chr13 11846405 11846717 -90026452 + AluSc SINE Alu 1 300 -9 2379 89 3 0 chr13 11846729 11847021 -90026148 + AluSq SINE Alu 1 293 -20 3515 69 22 47 chr13 11847030 11847145 -90026024 + L1PA11 LINE L1 5672 5788 -386 2129 113 0 7 chr13 11847145 11847455 -90025714 + AluSg SINE Alu 1 308 0 3515 69 22 47 chr13 11847455 11847615 -90025554 + L1PA11 LINE L1 5788 5951 -223 2384 72 3 10 chr13 11847615 11847920 -90025249 + AluSp SINE Alu 2 304 -9 3515 69 22 47 chr13 11847920 11848150 -90025019 + L1PA11 LINE L1 5951 6166 -8 22 35 0 0 chr13 11848150 11848179 -90024990 + AT_rich Low_complexity Low_complexity 1 29 0 2388 50 0 57 chr13 11848191 11848509 -90024660 + AluY SINE Alu 1 300 -11 189 0 0 0 chr13 11848525 11848546 -90024623 + (A)n Simple_repeat Simple_repeat 1 21 0 816 118 47 0 chr13 11848553 11848680 -90024489 + AluSq/x SINE Alu 1 133 -180 2575 74 0 0 chr13 11848684 11848993 -90024176 + AluSg1 SINE Alu 1 309 0 738 193 0 3 chr13 11849004 11849124 -90024045 + L1PA16 LINE L1 5817 5923 -243 2298 64 4 0 chr13 11849124 11849404 -90023765 + AluSx SINE Alu 1 281 -31 738 193 0 3 chr13 11849404 11849418 -90023751 + L1PA16 LINE L1 5923 5936 -230 1629 150 8 0 chr13 11849461 11849707 -90023462 + AluSq SINE Alu 1 248 -65 2124 97 14 7 chr13 11849878 11850168 -90023001 + AluY SINE Alu 1 292 -19 340 174 76 22 chr13 11850254 11850346 -90022823 + L1MC5 LINE L1 7827 7923 -38 267 29 0 0 chr13 11850349 11850373 -90022796 + (T)n Simple_repeat Simple_repeat 1 27 -7 1672 180 0 36 chr13 11850373 11850512 -90022657 + AluJo SINE Alu 1 143 -169 2254 120 3 0 chr13 11850512 11850821 -90022348 + AluSp SINE Alu 1 310 -3 1672 180 0 36 chr13 11850821 11850986 -90022183 + AluJo SINE Alu 143 294 -18 267 29 0 0 chr13 11850986 11850995 -90022174 + (T)n Simple_repeat Simple_repeat 26 34 0 23 33 0 0 chr13 11851045 11851075 -90022094 + AT_rich Low_complexity Low_complexity 1 30 0 269 269 115 38 chr13 11851524 11851695 -90021474 - MLT1J LTR MaLR -9 481 258 1746 179 71 0 chr13 11851807 11852131 -90021038 + MER7A DNA MER2_type 1 345 -1 264 303 74 0 chr13 11852402 11852524 -90020645 + MIR SINE MIR 132 262 0 375 317 8 8 chr13 11852533 11852656 -90020513 + MIR SINE MIR 10 132 -130 249 289 24 0 chr13 11852674 11852757 -90020412 - L1ME4a LINE L1 -86 6035 5951 2073 152 118 26 chr13 11853036 11853451 -90019718 + MLT1C LTR MaLR 15 467 0 262 335 62 6 chr13 11854501 11854662 -90018507 - L1MC5 LINE L1 -49 7912 7743 898 169 17 11 chr13 11854664 11854841 -90018328 - L1MB7 LINE L1 -11 6173 5996 929 63 0 24 chr13 11854946 11855072 -90018097 - AluSg/x SINE Alu -14 296 174 665 181 74 124 chr13 11855080 11855344 -90017825 - L1MC5 LINE L1 -307 7654 7409 2251 104 0 0 chr13 11855344 11855666 -90017503 - AluSx SINE Alu 0 322 1 665 181 74 124 chr13 11855666 11855763 -90017406 - L1MC5 LINE L1 -552 7409 7309 1657 194 7 13 chr13 11855848 11856158 -90017011 - AluJo SINE Alu -4 308 1 2345 80 3 13 chr13 11856172 11856472 -90016697 - AluSg SINE Alu -13 297 1 709 192 137 0 chr13 11856604 11856750 -90016419 + FAM SINE Alu 4 169 -6 1302 256 58 23 chr13 11856941 11857339 -90015830 - L1ME4a LINE L1 -273 5889 5478 415 117 0 0 chr13 11858110 11858170 -90014999 + AluS SINE Alu 2 61 -257 2283 105 3 3 chr13 11858423 11858728 -90014441 - AluSg1 SINE Alu -3 306 2 1979 130 18 0 chr13 11858730 11859006 -90014163 - AluSx SINE Alu -31 281 1 3353 119 73 16 chr13 11859243 11859285 -90013884 - L1MB2 LINE L1 -7 6164 6126 2341 102 3 0 chr13 11859285 11859589 -90013580 - AluSx SINE Alu -7 305 1 3353 119 73 16 chr13 11859589 11860124 -90013045 - L1MB2 LINE L1 -45 6126 5554 270 344 152 7 chr13 11860261 11860412 -90012757 - MIR3 SINE MIR -6 202 30 227 259 119 28 chr13 11862085 11862228 -90010941 + MIR3 SINE MIR 44 199 -9 2237 254 60 8 chr13 11862630 11863284 -90009885 - L1ME3 LINE L1 -1 6161 5474 2605 66 0 0 chr13 11863398 11863702 -90009467 - AluSx SINE Alu -8 304 1 211 268 28 56 chr13 11864031 11864102 -90009067 + L3 LINE CR1 1507 1575 -2 231 36 0 0 chr13 11864465 11864493 -90008676 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1653 174 50 17 chr13 11864493 11864792 -90008377 - AluJb SINE Alu -2 310 2 2166 117 17 0 chr13 11865003 11865293 -90007876 + AluSx SINE Alu 1 295 -17 1863 170 3 0 chr13 11865373 11865662 -90007507 - AluJb SINE Alu -22 290 1 2389 83 0 0 chr13 11866161 11866450 -90006719 + AluSc SINE Alu 1 289 -20 21 0 0 0 chr13 11866910 11866931 -90006238 + AT_rich Low_complexity Low_complexity 1 21 0 1929 170 0 3 chr13 11866934 11867245 -90005924 + AluJo SINE Alu 1 310 -2 215 231 58 0 chr13 11867598 11867650 -90005519 + MIR SINE MIR 106 160 -102 180 241 0 0 chr13 11867768 11867826 -90005343 + CT-rich Low_complexity Low_complexity 1 58 0 443 353 112 31 chr13 11867826 11868149 -90005020 - L2 LINE L2 -6 3266 2918 681 158 108 17 chr13 11868387 11868507 -90004662 + FLAM_A SINE Alu 1 131 -2 2136 129 0 13 chr13 11868509 11868819 -90004350 + AluJb SINE Alu 1 306 -6 577 212 72 52 chr13 11868980 11869173 -90003996 - L2 LINE L2 -567 2747 2551 1126 129 0 6 chr13 11869194 11869357 -90003812 + FRAM SINE Alu 1 153 -23 9729 194 27 12 chr13 11869790 11871153 -90002016 - L1P LINE L1 -966 5180 3774 1671 185 10 7 chr13 11871153 11871461 -90001708 - AluJb SINE Alu -3 309 1 9729 194 27 12 chr13 11871461 11872141 -90001028 - L1P LINE L1 -2372 3774 3106 188 159 0 23 chr13 11872431 11872475 -90000694 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 897 174 12 12 chr13 11872557 11872724 -90000445 - AluSg/x SINE Alu -5 307 141 206 269 0 19 chr13 11873410 11873462 -89999707 + C-rich Low_complexity Low_complexity 6 56 0 183 358 45 0 chr13 11873991 11874058 -89999111 + L3 LINE CR1 189 258 -1319 241 301 33 85 chr13 11874108 11874261 -89998908 - L2 LINE L2 0 3313 3169 278 277 96 11 chr13 11874425 11874519 -89998650 + MIR SINE MIR 71 172 -90 2174 89 7 7 chr13 11874593 11874884 -89998285 + AluSx SINE Alu 1 291 -21 2290 85 17 3 chr13 11875028 11875321 -89997848 + AluSg SINE Alu 1 297 -13 1352 199 13 23 chr13 11875378 11875680 -89997489 + AluJo SINE Alu 1 299 -13 2171 112 0 3 chr13 11875969 11876256 -89996913 + AluSx SINE Alu 1 286 -26 1298 179 47 21 chr13 11876364 11876643 -89996526 + AluJb SINE Alu 12 297 -15 2051 105 3 49 chr13 11876909 11877213 -89995956 + AluSx SINE Alu 1 290 -22 2467 63 3 0 chr13 11877752 11878052 -89995117 - AluSx SINE Alu -11 301 1 1666 165 33 0 chr13 11878237 11878534 -89994635 - AluJo SINE Alu 0 306 1 792 176 0 0 chr13 11878538 11878663 -89994506 - FLAM_A SINE Alu 0 142 18 25 31 0 0 chr13 11878689 11878721 -89994448 + AT_rich Low_complexity Low_complexity 1 32 0 1618 197 0 14 chr13 11879007 11879143 -89994026 + AluJo SINE Alu 1 137 -175 2043 125 0 7 chr13 11879143 11879439 -89993730 + AluSx SINE Alu 1 294 -18 1618 197 0 14 chr13 11879439 11879597 -89993572 + AluJo SINE Alu 137 291 -21 2042 123 3 25 chr13 11879624 11879941 -89993228 + AluSx SINE Alu 1 310 -2 619 281 152 44 chr13 11880468 11880810 -89992359 - MLT2F LTR ERVL -8 655 277 539 269 7 14 chr13 11880889 11881030 -89992139 - MLT2F LTR ERVL -523 140 1 312 167 174 45 chr13 11881035 11881167 -89992002 - ERVL-F LTR ERVL -21 5743 5595 3244 179 16 9 chr13 11881378 11881954 -89991215 + MER6A DNA MER2_type 26 605 0 1045 233 52 0 chr13 11881955 11882204 -89990965 - ERVL-F LTR ERVL -434 5330 5069 1287 166 0 9 chr13 11882206 11882417 -89990752 - AluJo SINE Alu -18 294 86 257 295 116 9 chr13 11882422 11882534 -89990635 - ERVL-F LTR ERVL -623 5031 4908 298 251 48 126 chr13 11882666 11882833 -89990336 - MLT1G1 LTR MaLR -2 593 440 851 309 22 7 chr13 11882907 11883176 -89989993 - MLT1G1 LTR MaLR -187 408 136 1934 124 4 0 chr13 11883315 11883580 -89989589 - AluSx SINE Alu -46 266 1 1084 99 7 0 chr13 11883594 11883746 -89989423 - L1MA4A LINE L1 -5 6298 6146 552 61 10 29 chr13 11883746 11883827 -89989342 + L1M3 LINE L1 5357 5438 -777 636 92 71 0 chr13 11883827 11883917 -89989252 + L1MA7 LINE L1 6178 6282 -9 552 61 10 29 chr13 11883917 11883961 -89989208 + L1M3 LINE L1 5438 5481 -734 * 2830 201 25 66 chr13 11883936 11884089 -89989080 + L1ME1 LINE L1 5295 5453 -713 1705 174 30 7 chr13 11884089 11884393 -89988776 + AluJb SINE Alu 1 311 -1 2830 201 25 66 chr13 11884393 11885038 -89988131 + L1ME1 LINE L1 5453 6060 -106 1875 155 3 19 chr13 11885053 11885370 -89987799 - AluJo SINE Alu 0 312 1 28 71 0 0 chr13 11885451 11885507 -89987662 + AT_rich Low_complexity Low_complexity 1 56 0 1564 183 45 3 chr13 11885891 11886180 -89986989 + AluJo SINE Alu 1 301 -11 23 33 0 0 chr13 11886377 11886407 -89986762 + AT_rich Low_complexity Low_complexity 1 30 0 183 254 182 18 chr13 11886560 11886615 -89986554 + MIR SINE MIR 85 148 -60 1760 138 28 14 chr13 11887696 11887986 -89985183 + AluJb SINE Alu 13 306 -6 421 198 179 9 chr13 11888104 11888210 -89984959 + MER5C DNA MER1_type 1 124 -200 456 171 23 78 chr13 11890258 11890270 -89982899 + L1MA9 LINE L1 6117 6128 -184 183 42 0 0 chr13 11890270 11890294 -89982875 + (GA)n Simple_repeat Simple_repeat 2 25 0 456 171 23 78 chr13 11890294 11890410 -89982759 + L1MA9 LINE L1 6128 6238 -74 271 152 15 15 chr13 11890459 11890525 -89982644 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 249 158 12 122 chr13 11890529 11890611 -89982558 + L1MA9 LINE L1 6228 6300 -12 293 288 131 12 chr13 11890620 11890698 -89982471 + HAL1 LINE L1 91 158 -2349 731 194 8 22 chr13 11890698 11890832 -89982337 + FLAM_C SINE Alu 2 133 0 293 288 131 12 chr13 11890832 11890913 -89982256 + HAL1 LINE L1 158 269 -2238 313 188 62 0 chr13 11890957 11891021 -89982148 + HAL1 LINE L1 637 704 -1803 833 219 70 32 chr13 11891022 11891352 -89981817 + HAL1 LINE L1 748 1462 -1045 2244 85 0 47 chr13 11891363 11891681 -89981488 + AluSx SINE Alu 1 303 -9 775 172 0 0 chr13 11891745 11891873 -89981296 - MER3 DNA MER1_type -81 128 1 2104 108 14 89 chr13 11892430 11892555 -89980614 + MER2 DNA MER2_type 2 135 -209 1783 164 7 3 chr13 11892555 11892841 -89980328 - AluJb SINE Alu -25 287 1 2104 108 14 89 chr13 11892841 11893086 -89980083 + MER2 DNA MER2_type 135 344 0 330 368 134 9 chr13 11893222 11893676 -89979493 + L2 LINE L2 2365 2875 -439 1604 149 0 41 chr13 11893796 11894065 -89979104 + AluJb SINE Alu 1 258 -54 353 137 0 0 chr13 11894065 11894116 -89979053 - Alu SINE Alu -249 52 2 845 109 8 31 chr13 11894160 11894288 -89978881 - AluSq/x SINE Alu -187 125 1 404 93 0 0 chr13 11894288 11894342 -89978827 - MSTB LTR MaLR -372 54 1 206 122 0 20 chr13 11894603 11894652 -89978517 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2017 93 11 4 chr13 11895350 11895620 -89977549 + AluSp SINE Alu 1 272 -41 3538 203 57 52 chr13 11895620 11896691 -89976478 - L1MC4a LINE L1 -405 7403 6339 1037 153 174 116 chr13 11896691 11896816 -89976353 - AluJo SINE Alu -9 293 177 225 0 0 0 chr13 11896816 11896841 -89976328 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1037 153 174 116 chr13 11896841 11896990 -89976179 - AluJo SINE Alu -125 177 3 1985 147 0 0 chr13 11896990 11897313 -89975856 - AluJo SINE Alu 0 323 1 3538 203 57 52 chr13 11897313 11898082 -89975087 - L1MC4a LINE L1 -1469 6339 5375 2226 111 0 0 chr13 11898082 11898380 -89974789 - AluSg1 SINE Alu -11 298 1 3538 203 57 52 chr13 11898380 11898501 -89974668 - L1MC4a LINE L1 -2433 5375 5256 863 173 0 0 chr13 11898555 11898682 -89974487 - FLAM_A SINE Alu -6 127 1 198 0 0 0 chr13 11899167 11899189 -89973980 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2179 104 0 3 chr13 11899189 11899476 -89973693 - AluSx SINE Alu -26 286 1 1859 119 48 104 chr13 11899673 11899913 -89973256 - MLT1B LTR MaLR -3 387 176 2077 117 3 3 chr13 11899913 11900212 -89972957 - AluSq SINE Alu -14 299 1 1859 119 48 104 chr13 11900212 11900365 -89972804 - MLT1B LTR MaLR -214 176 16 21 0 0 0 chr13 11900422 11900443 -89972726 + AT_rich Low_complexity Low_complexity 1 21 0 1750 164 0 17 chr13 11900890 11901189 -89971980 - AluJb SINE Alu -18 294 1 490 188 121 54 chr13 11901255 11901326 -89971843 + L1MC2 LINE L1 6073 6138 -206 1785 136 11 7 chr13 11901326 11901598 -89971571 - AluSx SINE Alu -39 273 1 490 188 121 54 chr13 11901598 11901675 -89971494 + L1MC2 LINE L1 6138 6231 -113 2386 46 39 26 chr13 11901919 11902225 -89970944 + AluY SINE Alu 2 311 0 1723 166 17 24 chr13 11902238 11902533 -89970636 + AluSx SINE Alu 1 293 -19 588 213 66 0 chr13 11902544 11902666 -89970503 - MLT-int LTR MaLR -1218 517 388 812 150 48 27 chr13 11902676 11902823 -89970346 - MLT1A1 LTR MaLR -215 150 1 1244 167 46 5 chr13 11902844 11903060 -89970109 - MER46A DNA MER2_type 0 236 12 2252 107 7 0 chr13 11903121 11903410 -89969759 + AluSx SINE Alu 3 293 -19 2334 98 0 0 chr13 11903419 11903714 -89969455 + AluY SINE Alu 1 295 -16 3450 191 18 39 chr13 11903714 11904570 -89968599 - L1ME1 LINE L1 -139 6027 5155 2280 84 7 3 chr13 11904570 11904868 -89968301 + AluSg SINE Alu 1 299 -11 2242 111 0 0 chr13 11904875 11905163 -89968006 + AluSx SINE Alu 11 298 -14 3450 191 18 39 chr13 11905163 11905205 -89967964 - L1ME1 LINE L1 -1017 5149 5141 * 4748 239 45 62 chr13 11905203 11906119 -89967050 + L1MEc LINE L1 612 1542 -4673 1481 181 0 0 chr13 11906119 11906357 -89966812 + AluJo SINE Alu 37 274 -38 4748 239 45 62 chr13 11906357 11906510 -89966659 + L1MEc LINE L1 1542 1696 -4519 1893 151 4 0 chr13 11906510 11906789 -89966380 + AluSx SINE Alu 5 284 -28 396 0 0 0 chr13 11906789 11906833 -89966336 + (CA)n Simple_repeat Simple_repeat 2 45 0 4748 239 45 62 chr13 11906833 11907495 -89965674 + L1MEc LINE L1 1695 2367 -3848 852 181 0 0 chr13 11907495 11907622 -89965547 - FLAM_C SINE Alu -6 127 1 4748 239 45 62 chr13 11907622 11908079 -89965090 + L1MEc LINE L1 2367 2830 -3385 2173 107 10 3 chr13 11908079 11908389 -89964780 - AluSx SINE Alu 0 312 1 4748 239 45 62 chr13 11908389 11908459 -89964710 + L1MEc LINE L1 2830 2822 -3393 2640 33 0 0 chr13 11908459 11908759 -89964410 - AluY SINE Alu -11 300 1 4748 239 45 62 chr13 11908759 11908824 -89964345 + L1MEc LINE L1 2821 2886 -3329 325 113 0 81 chr13 11908827 11908889 -89964280 + AluJb SINE Alu 86 142 -160 935 174 40 30 chr13 11908893 11909094 -89964075 + AluJb SINE Alu 100 302 -10 36 0 0 0 chr13 11909117 11909153 -89964016 + AT_rich Low_complexity Low_complexity 1 36 0 1134 200 5 9 chr13 11909169 11909379 -89963790 + AluJo SINE Alu 10 218 -94 4853 229 61 58 chr13 11909416 11910310 -89962859 + L1MEc LINE L1 3159 4048 -2167 1618 166 0 46 chr13 11910310 11910447 -89962722 + AluJb SINE Alu 1 143 -169 2320 73 0 11 chr13 11910447 11910782 -89962387 + AluY SINE Alu 1 332 0 1618 166 0 46 chr13 11910782 11910950 -89962219 + AluJb SINE Alu 143 293 -19 4853 229 61 58 chr13 11910950 11910990 -89962179 + L1MEc LINE L1 4048 4086 -2129 1519 188 0 41 chr13 11910990 11911283 -89961886 + AluJo SINE Alu 1 281 -31 4853 229 61 58 chr13 11911283 11911298 -89961871 + L1MEc LINE L1 4086 4099 -2116 2209 123 7 0 chr13 11911298 11911608 -89961561 + AluSx SINE Alu 1 312 0 4853 229 61 58 chr13 11911608 11912931 -89960238 + L1MEc LINE L1 4099 5370 -845 446 122 68 0 chr13 11912924 11912998 -89960171 + L1MA7 LINE L1 6025 6103 -188 * 1824 165 47 60 chr13 11912998 11913055 -89960114 + MSTB1 LTR MaLR 1 57 -375 2244 112 0 0 chr13 11913055 11913359 -89959810 - AluSx SINE Alu -8 304 1 1824 165 47 60 chr13 11913359 11913584 -89959585 + MSTB1 LTR MaLR 57 283 -149 3005 73 3 0 chr13 11913584 11913938 -89959231 + THE1A LTR MaLR 1 355 0 12591 87 4 6 chr13 11913938 11914441 -89958728 + THE1A-int LTR MaLR 1 504 -1076 2258 121 0 0 chr13 11914441 11914748 -89958421 + AluSg SINE Alu 1 307 -3 12591 87 4 6 chr13 11914748 11915828 -89957341 + THE1A-int LTR MaLR 504 1580 0 2858 68 0 66 chr13 11915828 11916208 -89956961 + THE1A LTR MaLR 1 355 0 1824 165 47 60 chr13 11916208 11916304 -89956865 + MSTB1 LTR MaLR 280 377 -55 636 171 22 28 chr13 11916313 11916494 -89956675 + CT-rich Low_complexity Low_complexity 1 180 0 1882 135 4 4 chr13 11916525 11916785 -89956384 - AluJb SINE Alu -30 282 23 1427 169 28 106 chr13 11916813 11917173 -89955996 + MLT2B3 LTR ERVL 223 554 0 2167 125 0 3 chr13 11917356 11917659 -89955510 + AluSx SINE Alu 1 302 -10 207 100 0 0 chr13 11917765 11917795 -89955374 + (T)n Simple_repeat Simple_repeat 1 30 0 2006 111 0 83 chr13 11917825 11918149 -89955020 - AluSx SINE Alu -15 297 1 2083 120 0 10 chr13 11918248 11918582 -89954587 - AluSc SINE Alu 0 309 1 22 0 0 0 chr13 11918591 11918613 -89954556 + AT_rich Low_complexity Low_complexity 1 22 0 717 227 20 0 chr13 11919234 11919384 -89953785 - AluJo SINE Alu -142 170 18 396 276 184 7 chr13 11919530 11919682 -89953487 - MER5A DNA MER1_type 0 189 11 2249 89 11 0 chr13 11919717 11920029 -89953140 - AluSp SINE Alu 0 315 1 843 129 0 57 chr13 11920044 11920184 -89952985 - FLAM_C SINE Alu 0 133 2 2187 119 3 10 chr13 11920193 11920504 -89952665 - AluSq SINE Alu -4 309 1 476 235 100 71 chr13 11921171 11921340 -89951829 + MIR SINE MIR 2 174 -62 1292 149 5 28 chr13 11921348 11921562 -89951607 + MER3 DNA MER1_type 1 209 0 214 208 0 42 chr13 11922429 11922477 -89950692 + CT-rich Low_complexity Low_complexity 3 48 0 694 268 218 9 chr13 11922654 11922971 -89950198 + L3 LINE CR1 862 1244 -333 313 312 0 64 chr13 11923082 11923239 -89949930 + L3 LINE CR1 1246 1392 -185 1090 192 144 19 chr13 11923407 11923678 -89949491 - MER93b LTR ERV1 0 373 69 586 198 9 0 chr13 11924025 11924136 -89949033 - L1MA10 LINE L1 -1 6333 6222 21 0 0 0 chr13 11925853 11925874 -89947295 + AT_rich Low_complexity Low_complexity 1 21 0 902 145 0 36 chr13 11926117 11926255 -89946914 - FLAM_C SINE Alu 0 133 1 301 266 64 0 chr13 11926269 11926378 -89946791 + L1ME4a LINE L1 6001 6116 -5 23 33 0 0 chr13 11927170 11927200 -89945969 + AT_rich Low_complexity Low_complexity 1 30 0 1560 163 14 54 chr13 11927423 11927717 -89945452 + AluJb SINE Alu 1 282 -30 242 221 47 23 chr13 11929467 11929553 -89943616 + L1ME4a LINE L1 6031 6118 -3 2375 103 82 10 chr13 11929688 11930076 -89943093 + LTR56 LTR ERV1 9 424 -21 663 180 82 0 chr13 11930078 11930200 -89942969 - FLAM_C SINE Alu -11 132 1 308 109 0 0 chr13 11930202 11930248 -89942921 + LTR23 LTR ERV1 391 436 -1 410 250 96 32 chr13 11930322 11930478 -89942691 + L1MC5 LINE L1 7752 7917 -44 2360 79 0 3 chr13 11930514 11930806 -89942363 - AluY SINE Alu -20 291 1 319 194 32 97 chr13 11930829 11930922 -89942247 + MER21B LTR ERV1 1 87 -776 2450 239 132 19 chr13 11930976 11931724 -89941445 + MER21B LTR ERV1 19 851 -12 2346 104 3 0 chr13 11931884 11932191 -89940978 + AluSp SINE Alu 1 308 -5 198 0 0 0 chr13 11932245 11932267 -89940902 + (ATG)n Simple_repeat Simple_repeat 3 24 0 2194 103 0 0 chr13 11932899 11933213 -89939956 - AluSg SINE Alu 0 314 1 26 0 0 0 chr13 11933368 11933394 -89939775 + AT_rich Low_complexity Low_complexity 1 26 0 356 309 41 55 chr13 11933821 11933988 -89939181 + L3 LINE CR1 1341 1506 -71 207 0 0 0 chr13 11933988 11934011 -89939158 + (TG)n Simple_repeat Simple_repeat 1 23 0 356 309 41 55 chr13 11934011 11934063 -89939106 + L3 LINE CR1 1506 1557 -20 2291 108 0 9 chr13 11934790 11935106 -89938063 + AluSq SINE Alu 1 313 0 2526 57 0 7 chr13 11935340 11935638 -89937531 + AluY SINE Alu 1 296 -15 2340 109 0 0 chr13 11935649 11935960 -89937209 + AluSx SINE Alu 1 311 -1 911 223 86 9 chr13 11936012 11936245 -89936924 + MIR SINE MIR 2 252 -10 205 213 0 27 chr13 11936609 11936684 -89936485 + T-rich Low_complexity Low_complexity 3 75 0 351 305 93 20 chr13 11938010 11938161 -89935008 + L2 LINE L2 3140 3301 -12 2033 150 0 6 chr13 11939445 11939758 -89933411 - AluJb SINE Alu -1 311 1 418 322 26 13 chr13 11939957 11940109 -89933060 + MER5A DNA MER1_type 7 160 -29 1639 143 23 97 chr13 11940126 11940290 -89932879 + MER33 DNA MER1_type 1 127 -2458 1877 165 7 0 chr13 11940290 11940593 -89932576 + AluJb SINE Alu 1 305 -7 1639 143 23 97 chr13 11940593 11940778 -89932391 + MER33 DNA MER1_type 127 324 0 963 190 67 10 chr13 11941034 11941229 -89931940 - MER20 DNA MER1_type 0 219 14 180 0 0 0 chr13 11941231 11941251 -89931918 + (T)n Simple_repeat Simple_repeat 1 20 0 2235 99 20 3 chr13 11941316 11941608 -89931561 - AluSx SINE Alu -15 297 1 2357 95 0 13 chr13 11942704 11943019 -89930150 - AluSx SINE Alu -1 311 1 2089 83 0 107 chr13 11943020 11943356 -89929813 - AluSg SINE Alu -10 300 1 804 153 16 0 chr13 11943358 11943482 -89929687 - FLAM_A SINE Alu -5 128 3 230 204 74 28 chr13 11943496 11943604 -89929565 - L1MC4 LINE L1 0 8042 7813 199 243 162 27 chr13 11944535 11944609 -89928560 - MIR SINE MIR -18 244 161 314 227 73 60 chr13 11944805 11944955 -89928214 - L1ME4a LINE L1 -225 5896 5745 318 26 0 0 chr13 11944997 11945036 -89928133 + (TTA)n Simple_repeat Simple_repeat 1 39 0 5314 149 54 27 chr13 11945247 11945638 -89927531 + L1PA15 LINE L1 4998 5377 -788 2436 74 0 3 chr13 11945638 11945936 -89927233 + AluY SINE Alu 1 297 -14 5314 149 54 27 chr13 11945936 11946493 -89926676 + L1PA15 LINE L1 5377 5980 -185 2223 104 3 3 chr13 11946493 11946790 -89926379 - AluSp SINE Alu -16 297 1 5314 149 54 27 chr13 11946790 11946966 -89926203 + L1PA15 LINE L1 5980 6150 -15 2100 123 3 25 chr13 11946967 11947284 -89925885 - AluSx SINE Alu -2 310 1 2190 176 41 22 chr13 11948244 11948660 -89924509 - MLT1C LTR MaLR -43 424 1 21 36 0 0 chr13 11948982 11949010 -89924159 + AT_rich Low_complexity Low_complexity 1 28 0 293 338 121 6 chr13 11949159 11949316 -89923853 - MIR SINE MIR -83 179 5 196 245 0 20 chr13 11949390 11949439 -89923730 + MIR SINE MIR 100 147 -61 1705 114 153 4 chr13 11949445 11949700 -89923469 + AluSx SINE Alu 2 294 -8 875 200 19 7 chr13 11949739 11949894 -89923275 + FRAM SINE Alu 1 157 -9 519 160 0 0 chr13 11950016 11950091 -89923078 + AluJo SINE Alu 2 76 -236 620 191 0 0 chr13 11950093 11950187 -89922982 - AluJb SINE Alu -20 292 199 330 74 111 19 chr13 11950187 11950241 -89922928 + AluJo SINE Alu 76 134 -168 486 314 67 22 chr13 11950464 11950687 -89922482 - MIR SINE MIR -21 241 9 927 163 39 28 chr13 11950958 11951136 -89922033 + AluYa5 SINE Alu 112 291 -20 337 239 33 19 chr13 11951138 11951279 -89921890 - L1MB7 LINE L1 -5 6179 6037 265 322 0 0 chr13 11951343 11951402 -89921767 - MIR SINE MIR -156 106 48 384 219 75 62 chr13 11951611 11951771 -89921398 - MER103 DNA DNA -1 165 4 2235 106 3 0 chr13 11951953 11952246 -89920923 - AluSg SINE Alu -16 294 1 864 154 0 22 chr13 11952327 11952463 -89920706 - FLAM_C SINE Alu 0 133 1 300 294 101 0 chr13 11952520 11952629 -89920540 + MIR SINE MIR 59 178 -84 1476 208 27 53 chr13 11952682 11953057 -89920112 - MLT1A1 LTR MaLR 0 365 1 4134 230 81 31 chr13 11953057 11954099 -89919070 - MLT1A1-int LTR MaLR 0 1735 642 397 304 0 0 chr13 12004302 12004394 -89868775 + L2 LINE L2 3175 3266 -6 1708 191 0 25 chr13 12004652 12004971 -89868198 + AluJb SINE Alu 1 311 -1 958 221 5 0 chr13 12005354 12005544 -89867625 + AluJo SINE Alu 118 308 -4 2167 116 3 13 chr13 12005734 12006045 -89867124 + AluSq SINE Alu 1 308 -5 1124 158 19 10 chr13 12006293 12006502 -89866667 - 7SLRNA srpRNA srpRNA -93 227 17 185 336 100 55 chr13 12006729 12006949 -89866220 + L2 LINE L2 3080 3309 -4 755 183 16 0 chr13 12007172 12007298 -89865871 + FLAM_A SINE Alu 2 129 -4 900 146 0 6 chr13 12007641 12008001 -89865168 + (TATATG)n Simple_repeat Simple_repeat 3 536 0 763 208 69 135 chr13 12008035 12008184 -89864985 + MIR SINE MIR 2 126 -136 2536 93 0 0 chr13 12008184 12008496 -89864673 + AluSx SINE Alu 1 312 0 763 208 69 135 chr13 12008496 12008620 -89864549 + MIR SINE MIR 126 257 -5 236 162 0 44 chr13 12009500 12009568 -89863601 + L1MB8 LINE L1 6108 6172 -6 720 211 5 98 chr13 12009765 12009942 -89863227 + FRAM SINE Alu 1 160 -152 2029 111 0 0 chr13 12009942 12010203 -89862966 + AluSq SINE Alu 2 262 -51 720 211 5 98 chr13 12010203 12010219 -89862950 + FRAM SINE Alu 160 176 0 1190 162 162 59 chr13 12010270 12010541 -89862628 + AluJo SINE Alu 1 299 -3 342 332 91 15 chr13 12010804 12011003 -89862166 + MIR SINE MIR 35 248 -14 1803 161 31 0 chr13 12011006 12011323 -89861846 + L1MB3 LINE L1 5854 6180 -3 207 69 0 0 chr13 12012382 12012411 -89860758 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 204 40 0 0 chr13 12014026 12014051 -89859118 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2440 65 3 0 chr13 12015785 12016079 -89857090 - AluSg SINE Alu -15 295 1 381 274 63 0 chr13 12016471 12016566 -89856603 + MIR3 SINE MIR 76 176 -32 1641 158 87 4 chr13 12017876 12018142 -89855027 - AluJo SINE Alu -24 288 1 906 110 17 0 chr13 12019711 12019884 -89853285 + (TA)n Simple_repeat Simple_repeat 1 176 0 200 176 0 0 chr13 12019888 12019922 -89853247 + (CA)n Simple_repeat Simple_repeat 1 34 0 315 279 140 0 chr13 12020011 12020147 -89853022 - MIR SINE MIR -13 249 95 2415 158 5 105 chr13 12020722 12020869 -89852300 - L1MA7 LINE L1 0 6291 6131 2246 104 0 3 chr13 12020869 12021158 -89852011 - AluSx SINE Alu -24 288 1 2415 158 5 105 chr13 12021158 12021551 -89851618 - L1MA7 LINE L1 -160 6131 5816 2151 133 0 0 chr13 12021551 12021845 -89851324 + AluSq SINE Alu 11 304 -9 2415 158 5 105 chr13 12021845 12021912 -89851257 - L1MA7 LINE L1 -475 5816 5744 1996 130 3 0 chr13 12022174 12022473 -89850696 + AluSx SINE Alu 3 302 -10 931 138 119 0 chr13 12022788 12022947 -89850222 - AluSg/x SINE Alu -5 307 130 279 265 57 0 chr13 12022993 12023082 -89850087 + MIR SINE MIR 53 147 -62 2355 93 0 13 chr13 12023527 12023827 -89849342 - AluSq SINE Alu -17 296 1 2357 67 17 3 chr13 12024411 12024710 -89848459 - AluY SINE Alu -8 303 1 305 236 16 16 chr13 12024749 12024872 -89848297 + (TA)n Simple_repeat Simple_repeat 2 124 0 21 36 0 0 chr13 12025642 12025670 -89847499 + AT_rich Low_complexity Low_complexity 1 28 0 2360 104 3 0 chr13 12025869 12026233 -89846936 - AluSg SINE Alu 0 365 1 241 263 53 0 chr13 12026326 12026402 -89846767 - MIR SINE MIR -115 147 68 23 0 0 0 chr13 12027501 12027524 -89845645 + GC_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr13 12029698 12029729 -89843440 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 12030609 12030638 -89842531 + GC_rich Low_complexity Low_complexity 1 29 0 484 240 49 67 chr13 12033972 12034197 -89838972 - MER112 DNA MER1_type -12 248 28 406 236 184 61 chr13 12034928 12035169 -89838000 - L2 LINE L2 -234 3038 2778 458 149 0 81 chr13 12035202 12035289 -89837880 - AluSg/x SINE Alu -12 297 218 33 25 0 0 chr13 12035291 12035331 -89837838 + AT_rich Low_complexity Low_complexity 1 40 0 1888 81 107 11 chr13 12035372 12035644 -89837525 + AluSx SINE Alu 1 298 -14 42 20 0 0 chr13 12035668 12035717 -89837452 + AT_rich Low_complexity Low_complexity 1 49 0 1231 263 37 34 chr13 12035856 12036263 -89836906 + MLT1E2 LTR MaLR 1 408 -218 252 190 9 155 chr13 12036292 12036328 -89836841 + MLT1E2 LTR MaLR 556 538 -88 7217 57 0 1 chr13 12036328 12037453 -89835716 + L1PA6 LINE L1 5030 6154 0 252 190 9 155 chr13 12037453 12037532 -89835637 + MLT1E2 LTR MaLR 537 626 0 579 266 58 34 chr13 12037536 12037743 -89835426 - MLT1J LTR MaLR -292 219 8 2184 117 3 7 chr13 12037785 12038083 -89835086 + AluSx SINE Alu 1 297 -15 331 268 58 65 chr13 12038373 12038511 -89834658 + MIR SINE MIR 59 195 -67 752 253 61 0 chr13 12038626 12038871 -89834298 - MER112 DNA MER1_type 0 260 1 2122 104 11 0 chr13 12039090 12039401 -89833768 - AluY SINE Alu 0 314 1 754 230 165 8 chr13 12039402 12039877 -89833292 + LTR50 LTR ERVL 7 653 -142 1546 95 41 0 chr13 12039878 12040099 -89833070 - MER30 DNA MER1_type 0 230 1 289 264 179 0 chr13 12040209 12040315 -89832854 + AluJo SINE Alu 8 132 -170 494 242 0 64 chr13 12040455 12040612 -89832557 + MLT1F LTR MaLR 1 147 -395 1076 169 17 6 chr13 12040617 12040794 -89832375 - AluJb SINE Alu -14 298 120 21 0 0 0 chr13 12041036 12041057 -89832112 + GC_rich Low_complexity Low_complexity 1 21 0 823 185 6 6 chr13 12041717 12042072 -89831097 + CT-rich Low_complexity Low_complexity 1 355 0 189 130 19 37 chr13 12042084 12042138 -89831031 + CT-rich Low_complexity Low_complexity 2 54 0 194 0 0 37 chr13 12042775 12042802 -89830367 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 957 91 8 0 chr13 12042846 12042967 -89830202 - AluSg/x SINE Alu -108 202 81 180 0 0 0 chr13 12043589 12043609 -89829560 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 506 335 61 22 chr13 12043716 12043946 -89829223 + MIR SINE MIR 24 262 0 324 291 215 12 chr13 12044519 12044691 -89828478 + MIR SINE MIR 20 226 -36 902 206 4 69 chr13 12048587 12048820 -89824349 - MIR SINE MIR -3 259 42 429 188 0 0 chr13 12048975 12049055 -89824114 + L1MA7 LINE L1 6060 6139 -152 783 214 0 66 chr13 12049342 12049360 -89823809 + AluJo SINE Alu 120 138 -174 2245 115 0 26 chr13 12049360 12049673 -89823496 + AluSg SINE Alu 1 305 -5 783 214 0 66 chr13 12049673 12049836 -89823333 + AluJo SINE Alu 138 289 -23 1981 110 22 0 chr13 12049888 12050190 -89822979 + AluSq SINE Alu 11 318 0 426 310 57 38 chr13 12050465 12050623 -89822546 + MIR SINE MIR 50 210 -52 1397 183 30 33 chr13 12050646 12050946 -89822223 - AluJo SINE Alu -13 299 1 3776 207 91 78 chr13 12051411 12051548 -89821621 - L1MCa LINE L1 -3875 2732 2598 2309 102 0 3 chr13 12051548 12051843 -89821326 - AluY SINE Alu -15 296 3 3776 207 91 78 chr13 12051843 12054150 -89819019 - L1MCa LINE L1 -4009 2598 266 3126 138 39 11 chr13 12054158 12054696 -89818473 + L1MB2 LINE L1 5617 6169 -2 3678 238 53 19 chr13 12054707 12056044 -89817125 - L1M4 LINE L1 -1538 4608 3202 562 172 72 129 chr13 12056044 12056117 -89817052 - MLT1D LTR MaLR -258 247 171 724 233 0 0 chr13 12056117 12056250 -89816919 - FLAM_A SINE Alu 0 133 1 562 172 72 129 chr13 12056250 12056385 -89816784 - MLT1D LTR MaLR -334 171 51 1820 146 91 0 chr13 12056555 12056842 -89816327 - AluSq SINE Alu 0 313 1 216 254 32 0 chr13 12056857 12056920 -89816249 + GA-rich Low_complexity Low_complexity 4 68 0 324 70 0 0 chr13 12056926 12056969 -89816200 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 268 250 44 0 chr13 12057146 12057214 -89815955 - L2 LINE L2 -12 3301 3231 2077 116 18 0 chr13 12057445 12057741 -89815428 + AluSx SINE Alu 1 301 0 1333 298 82 11 chr13 12057984 12058595 -89814574 + MLT2F LTR ERVL 4 657 -6 21 57 0 0 chr13 12060147 12060182 -89812987 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 12060675 12060696 -89812473 + AT_rich Low_complexity Low_complexity 1 21 0 306 141 141 0 chr13 12060723 12060794 -89812375 + L1MC4 LINE L1 7136 7216 -826 * 2003 165 18 17 chr13 12060784 12061202 -89811967 + L1MA6 LINE L1 5607 5949 -351 1802 139 3 63 chr13 12061730 12062046 -89811123 - AluJo SINE Alu -15 297 1 505 301 121 1 chr13 12062301 12062486 -89810683 + MIR SINE MIR 28 235 -27 1738 146 34 4 chr13 12062679 12062946 -89810223 + AluJo SINE Alu 19 293 -19 2336 106 0 0 chr13 12063154 12063447 -89809722 + AluSg SINE Alu 1 293 -17 249 184 66 105 chr13 12063587 12063605 -89809564 - L2 LINE L2 0 3313 3296 2124 137 0 0 chr13 12063605 12063934 -89809235 - AluSx SINE Alu 0 329 1 249 184 66 105 chr13 12063934 12063990 -89809179 - L2 LINE L2 -17 3296 3241 * 1362 319 187 15 chr13 12063980 12064775 -89808394 - L2 LINE L2 -1371 1943 1286 1661 183 62 0 chr13 12064775 12065065 -89808104 + AluJo SINE Alu 1 308 -4 1362 319 187 15 chr13 12065065 12065641 -89807528 - L2 LINE L2 -2028 1286 342 293 257 91 38 chr13 12065646 12065791 -89807378 - MER112 DNA MER1_type -37 223 62 342 0 0 0 chr13 12065791 12065829 -89807340 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 257 91 38 chr13 12065829 12065893 -89807276 - MER112 DNA MER1_type -198 62 3 2643 204 107 60 chr13 12066125 12066895 -89806274 + MER21B LTR ERV1 14 819 -44 2297 111 0 3 chr13 12067462 12067769 -89805400 - AluSx SINE Alu -6 306 1 212 195 126 58 chr13 12067893 12067980 -89805189 - L2 LINE L2 -37 3276 3184 198 103 0 0 chr13 12069695 12069724 -89803445 + (A)n Simple_repeat Simple_repeat 1 29 0 2296 99 3 0 chr13 12070255 12070557 -89802612 + AluSx SINE Alu 1 303 -9 2748 152 27 6 chr13 12070566 12071054 -89802115 + L1MB3 LINE L1 5686 6183 0 280 300 0 0 chr13 12072415 12072505 -89800664 - MIR SINE MIR -54 208 119 1688 159 52 10 chr13 12072674 12072963 -89800206 - AluJo SINE Alu -11 301 1 530 307 132 41 chr13 12073055 12073661 -89799508 - L1MC4a LINE L1 -1768 6040 5380 618 263 11 17 chr13 12073859 12074034 -89799135 - MER5B DNA MER1_type -4 174 1 347 307 39 0 chr13 12074376 12074503 -89798666 - L2 LINE L2 0 3313 3182 315 122 0 0 chr13 12075866 12075915 -89797254 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 2407 78 3 0 chr13 12076152 12076447 -89796722 + AluY SINE Alu 1 296 -15 279 0 0 0 chr13 12076521 12076552 -89796617 + (CA)n Simple_repeat Simple_repeat 1 31 0 254 136 0 17 chr13 12077198 12077257 -89795912 + (GGA)n Simple_repeat Simple_repeat 3 60 0 1963 118 0 7 chr13 12080455 12080727 -89792442 + AluSx SINE Alu 31 300 -12 361 285 77 8 chr13 12081123 12081253 -89791916 - MIR SINE MIR -103 159 21 7183 44 0 5 chr13 12081404 12082509 -89790660 - L1PA6 LINE L1 0 6154 5039 1980 134 0 48 chr13 12082541 12082854 -89790315 - AluJo SINE Alu -14 298 1 1941 209 30 52 chr13 12083497 12083585 -89789584 + MLT1B-int LTR MaLR 941 1029 -342 2084 136 0 16 chr13 12083585 12083893 -89789276 + AluJo SINE Alu 2 304 -8 1941 209 30 52 chr13 12083893 12084100 -89789069 + MLT1B-int LTR MaLR 1029 1227 -144 2192 113 0 3 chr13 12084100 12084393 -89788776 - AluSq SINE Alu -21 292 1 1941 209 30 52 chr13 12084393 12084522 -89788647 + MLT1B-int LTR MaLR 1227 1357 -14 2124 133 7 83 chr13 12084527 12084710 -89788459 + MLT1B LTR MaLR 1 196 -194 2680 52 0 0 chr13 12084710 12085016 -89788153 + AluY SINE Alu 1 306 -5 2302 108 0 0 chr13 12085025 12085332 -89787837 + AluSx SINE Alu 1 307 -5 2124 133 7 83 chr13 12085332 12085559 -89787610 + MLT1B LTR MaLR 204 389 -1 1063 287 123 42 chr13 12085923 12086515 -89786654 + HAL1 LINE L1 16 655 -1852 1298 228 81 54 chr13 12086619 12087123 -89786046 + HAL1 LINE L1 848 1365 -1142 386 253 0 0 chr13 12087125 12087212 -89785957 - L2 LINE L2 0 3313 3227 948 283 42 36 chr13 12087224 12087609 -89785560 - L2 LINE L2 -701 2613 2227 335 23 23 0 chr13 12087920 12087964 -89785205 + (TG)n Simple_repeat Simple_repeat 2 46 0 273 291 67 0 chr13 12088005 12088184 -89784985 - L1M4 LINE L1 -1779 4367 4177 484 132 0 0 chr13 12088185 12088253 -89784916 + Tigger2 DNA MER2_type 1 68 -2650 * 2521 146 31 20 chr13 12088238 12088606 -89784563 + Tigger2 DNA MER2_type 2267 2642 -76 2516 127 2 10 chr13 12088606 12089001 -89784168 + L1MA5A LINE L1 5896 6287 -10 2521 146 31 20 chr13 12089001 12089078 -89784091 + Tigger2 DNA MER2_type 2642 2717 -1 2234 111 3 25 chr13 12090231 12090547 -89782622 + AluSx SINE Alu 1 309 -3 468 269 83 16 chr13 12092386 12092579 -89780590 - MIR SINE MIR -40 222 17 640 154 0 27 chr13 12092756 12092866 -89780303 - MER20 DNA MER1_type 0 219 113 1716 187 19 16 chr13 12093042 12093406 -89779763 - MLT1A1 LTR MaLR 0 365 1 2519 131 26 30 chr13 12093562 12093991 -89779178 + MSTA LTR MaLR 1 427 -1 2606 49 0 7 chr13 12095686 12095991 -89777178 - AluY SINE Alu -8 303 1 8127 120 84 91 chr13 12096831 12098541 -89774628 - pTR5 LTR ERV1 0 2438 741 258 309 151 0 chr13 12098569 12098695 -89774474 - MIR SINE MIR -117 145 1 489 229 210 25 chr13 12099416 12099573 -89773596 + MER5A DNA MER1_type 4 189 0 303 246 29 0 chr13 12099952 12100021 -89773148 - MIR SINE MIR -181 81 11 2303 78 6 38 chr13 12100079 12100398 -89772771 + AluSq SINE Alu 2 310 -3 450 0 0 0 chr13 12100833 12100883 -89772286 + (GA)n Simple_repeat Simple_repeat 1 50 0 494 258 96 12 chr13 12102438 12102605 -89770564 - MIR SINE MIR -74 188 8 1083 137 128 47 chr13 12102655 12102889 -89770280 - ORSL DNA AcHobo 0 275 23 2187 154 158 26 chr13 12103038 12103424 -89769745 - MLT2B2 LTR ERVL 0 515 59 2403 99 0 0 chr13 12103424 12103727 -89769442 + AluSg SINE Alu 1 303 -7 2187 154 158 26 chr13 12103727 12103795 -89769374 - MLT2B2 LTR ERVL -456 59 1 191 319 193 8 chr13 12103944 12104063 -89769106 + MIR SINE MIR 110 250 -12 3259 133 17 17 chr13 12104188 12104721 -89768448 + LTR10A LTR ERV1 13 545 -64 2396 75 7 0 chr13 12105474 12105768 -89767401 - AluY SINE Alu -15 296 1 339 303 37 0 chr13 12106104 12106213 -89766956 - L2 LINE L2 -4 3268 3156 2336 96 3 0 chr13 12106213 12106516 -89766653 - AluSp SINE Alu -9 304 1 1272 226 48 77 chr13 12106516 12106698 -89766471 - HAL1 LINE L1 -540 1967 1781 1548 172 111 0 chr13 12106698 12106873 -89766296 - AluJo SINE Alu -2 310 156 375 23 0 0 chr13 12106873 12106917 -89766252 + (CA)n Simple_repeat Simple_repeat 2 45 0 1548 172 111 0 chr13 12106917 12107020 -89766149 - AluJo SINE Alu -156 156 1 1272 226 48 77 chr13 12107020 12107253 -89765916 - HAL1 LINE L1 -726 1781 1564 482 240 74 50 chr13 12107250 12107585 -89765584 - HAL1 LINE L1 -1482 1025 651 * 1709 162 23 0 chr13 12107586 12107852 -89765317 + AluSx SINE Alu 1 272 -40 1773 128 4 0 chr13 12107854 12108104 -89765065 - AluSx SINE Alu -61 251 1 1016 276 89 31 chr13 12108230 12108646 -89764523 - HAL1 LINE L1 -2046 461 22 286 256 70 0 chr13 12109007 12109093 -89764076 + MIR SINE MIR 110 201 -61 2505 73 0 10 chr13 12109401 12109714 -89763455 - AluY SINE Alu -1 310 1 1899 152 0 7 chr13 12109961 12110257 -89762912 - AluJb SINE Alu -18 294 1 2377 97 0 3 chr13 12110457 12110768 -89762401 - AluSg SINE Alu 0 310 1 706 71 0 0 chr13 12111361 12111459 -89761710 + AluY SINE Alu 205 302 -9 1566 234 34 96 chr13 12111544 12111750 -89761419 + L1MEc LINE L1 37 254 -6142 2034 136 0 7 chr13 12111750 12112045 -89761124 - AluSx SINE Alu -19 293 1 1566 234 34 96 chr13 12112045 12112314 -89760855 + L1MEc LINE L1 254 474 -5922 2599 61 0 0 chr13 12112314 12112625 -89760544 - AluY SINE Alu 0 311 1 1566 234 34 96 chr13 12112625 12112709 -89760460 + L1MEc LINE L1 474 562 -5834 563 274 137 4 chr13 12112704 12112967 -89760202 + L1MEc LINE L1 1614 1911 -4485 * 2854 235 76 19 chr13 12112967 12113835 -89759334 + L1MEc LINE L1 2342 3270 -2945 2145 125 0 16 chr13 12113835 12114148 -89759021 - AluSx SINE Alu 0 312 5 2854 235 76 19 chr13 12114148 12114231 -89758938 + L1MEc LINE L1 3270 3347 -2868 2193 173 116 11 chr13 12114614 12114720 -89758449 - MLT1D LTR MaLR 0 505 412 2153 126 3 0 chr13 12114720 12115022 -89758147 + AluSx SINE Alu 1 303 -9 2193 173 116 11 chr13 12115022 12115372 -89757797 - MLT1D LTR MaLR -93 412 1 2193 133 0 7 chr13 12115856 12116164 -89757005 - AluSg SINE Alu -4 306 1 295 275 136 46 chr13 12116269 12116337 -89756832 + L1ME4a LINE L1 5353 5413 -708 1588 158 32 35 chr13 12116337 12116645 -89756524 + AluJb SINE Alu 1 307 0 295 275 136 46 chr13 12116645 12116920 -89756249 + L1ME4a LINE L1 5413 5728 -393 1861 186 14 6 chr13 12116952 12117307 -89755862 - MLT1A1 LTR MaLR -7 358 1 462 222 15 0 chr13 12117307 12117442 -89755727 + L1ME4a LINE L1 5738 5874 -247 270 0 0 0 chr13 12117489 12117519 -89755650 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr13 12117518 12117544 -89755625 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 2312 109 3 0 chr13 12117547 12117851 -89755318 - AluSp SINE Alu -8 305 1 281 222 34 34 chr13 12118104 12118221 -89754948 + (CTATT)n Simple_repeat Simple_repeat 4 120 0 21 0 0 0 chr13 12118234 12118255 -89754914 + AT_rich Low_complexity Low_complexity 1 21 0 773 149 0 9 chr13 12118388 12118502 -89754667 - FLAM_C SINE Alu -24 119 7 200 310 35 35 chr13 12118507 12118594 -89754575 + L2 LINE L2 3227 3313 0 261 274 107 24 chr13 12118665 12118749 -89754420 + L2 LINE L2 3195 3285 -28 288 330 31 0 chr13 12118855 12118952 -89754217 + MIR SINE MIR 87 186 -76 201 244 22 0 chr13 12120504 12120549 -89752620 - L2 LINE L2 -6 3307 3262 630 246 22 28 chr13 12120550 12120729 -89752440 - MIR SINE MIR -72 190 13 338 289 128 47 chr13 12122495 12122644 -89750525 - MIR SINE MIR -38 224 64 326 291 128 7 chr13 12123748 12123896 -89749273 - MIR SINE MIR -77 185 20 315 304 233 23 chr13 12123875 12124184 -89748985 + L2 LINE L2 2897 3270 -2 * 429 252 43 9 chr13 12124712 12124827 -89748342 + MIR SINE MIR 32 150 -112 1617 213 80 29 chr13 12124842 12125218 -89747951 - MSTD LTR MaLR -1 395 1 388 311 79 18 chr13 12128316 12128544 -89744625 + MIR SINE MIR 21 262 0 1842 222 47 24 chr13 12128735 12129186 -89743983 - LTR40b LTR ERVL -1 461 1 186 191 0 0 chr13 12129538 12129580 -89743589 + (ATG)n Simple_repeat Simple_repeat 3 44 0 750 247 192 0 chr13 12130339 12130558 -89742611 - MIR SINE MIR 0 262 2 280 237 0 0 chr13 12130715 12130774 -89742395 + MIR SINE MIR 108 166 -96 748 202 8 0 chr13 12131084 12131208 -89741961 + FLAM_C SINE Alu 2 126 -17 34 42 0 0 chr13 12131208 12131256 -89741913 + AT_rich Low_complexity Low_complexity 1 48 0 289 342 58 0 chr13 12134041 12134161 -89739008 - L2 LINE L2 -11 3302 3176 628 224 200 71 chr13 12134251 12134701 -89738468 - MLT1J LTR MaLR -2 509 2 1212 153 62 8 chr13 12135205 12135447 -89737722 + L1MB2 LINE L1 5915 6169 -2 2103 121 0 57 chr13 12135555 12135886 -89737283 + AluSx SINE Alu 1 312 0 454 286 40 0 chr13 12136166 12136292 -89736877 + MIR SINE MIR 16 146 -62 758 148 58 58 chr13 12136346 12136535 -89736634 - MER53 DNA DNA 0 189 1 2428 85 0 7 chr13 12136760 12137065 -89736104 - AluSg SINE Alu -7 303 1 360 0 0 0 chr13 12137371 12137411 -89735758 + (CA)n Simple_repeat Simple_repeat 2 41 0 2136 120 0 20 chr13 12137677 12138004 -89735165 + AluSx SINE Alu 1 312 0 785 258 120 27 chr13 12138779 12139078 -89734091 - L2 LINE L2 0 3313 2987 216 0 0 0 chr13 12140129 12140153 -89733016 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 12142554 12142576 -89730593 + GC_rich Low_complexity Low_complexity 1 22 0 206 205 0 0 chr13 12143447 12143486 -89729683 + (CGG)n Simple_repeat Simple_repeat 3 41 0 29 60 0 0 chr13 12144428 12144478 -89728691 + AT_rich Low_complexity Low_complexity 1 50 0 252 59 0 0 chr13 12145422 12145456 -89727713 + (CA)n Simple_repeat Simple_repeat 2 35 0 955 204 14 27 chr13 12145573 12145794 -89727375 - L1MB8 LINE L1 -6 6172 5955 977 239 56 8 chr13 12145794 12146062 -89727107 - MLT2B3 LTR ERVL 0 554 274 430 284 109 25 chr13 12147485 12147724 -89725445 + MIR SINE MIR 4 262 0 211 305 49 12 chr13 12147725 12147807 -89725362 + L2 LINE L2 3222 3306 -7 1088 156 58 10 chr13 12148005 12148210 -89724959 - MER20 DNA MER1_type -4 215 1 198 0 0 0 chr13 12148681 12148703 -89724466 + (TC)n Simple_repeat Simple_repeat 1 22 0 2297 150 29 0 chr13 12149869 12150248 -89722921 + MLT1B LTR MaLR 1 390 0 442 298 15 15 chr13 12150316 12150447 -89722722 + MIR SINE MIR 20 150 -58 429 266 35 7 chr13 12150936 12151079 -89722090 + LTR67 LTR ERVL 411 557 0 2349 105 3 0 chr13 12151245 12151549 -89721620 - AluSq SINE Alu -8 305 1 846 127 206 0 chr13 12151617 12151782 -89721387 + MSTC LTR MaLR 4 202 -226 1913 97 32 0 chr13 12151789 12152037 -89721132 + AluSx SINE Alu 1 256 -56 421 188 12 0 chr13 12152037 12152122 -89721047 + MSTC LTR MaLR 343 428 0 410 263 111 26 chr13 12152443 12152633 -89720536 - MLT1K LTR MaLR -5 583 378 4158 198 43 19 chr13 12153095 12154082 -89719087 + Charlie1a DNA MER1_type 33 1042 -413 319 234 0 0 chr13 12154083 12154147 -89719022 + AluS SINE Alu 1 64 -239 795 181 27 34 chr13 12154147 12154296 -89718873 - FRAM SINE Alu -18 148 1 248 146 0 0 chr13 12154308 12154349 -89718820 - FRAM SINE Alu -7 4294967286 1 * 1470 140 29 86 chr13 12154349 12154680 -89718489 + Charlie1a DNA MER1_type 1027 1329 -1432 2392 98 7 0 chr13 12154680 12154985 -89718184 - AluSx SINE Alu -5 307 1 1470 140 29 86 chr13 12154985 12155090 -89718079 + Charlie1a DNA MER1_type 1329 1438 -17 778 243 22 11 chr13 12155144 12155329 -89717840 - MIR SINE MIR -59 203 17 2021 135 3 3 chr13 12155736 12156025 -89717144 - AluJo SINE Alu -13 299 11 190 250 201 14 chr13 12156926 12157070 -89716099 + L2 LINE L2 2910 3080 -192 215 298 88 35 chr13 12157174 12157288 -89715881 + L2 LINE L2 3125 3244 -28 2098 160 5 16 chr13 12158067 12158454 -89714715 + MLT1B LTR MaLR 1 383 -7 927 134 29 35 chr13 12158761 12158932 -89714237 + LTR8 LTR ERV1 415 584 -107 338 320 103 20 chr13 12159275 12159575 -89713594 - L2 LINE L2 -360 2954 2630 262 267 98 21 chr13 12160066 12160201 -89712968 - MIR SINE MIR -67 141 9 244 236 18 0 chr13 12160293 12160348 -89712821 + L2 LINE L2 3217 3272 0 1685 168 0 50 chr13 12160471 12160791 -89712378 + AluJo SINE Alu 1 305 0 419 228 124 48 chr13 12160845 12160990 -89712179 - L2 LINE L2 0 3313 3158 1400 153 18 36 chr13 12161059 12161333 -89711836 - Tigger7 DNA MER2_type 0 2487 2219 2221 133 0 0 chr13 12161435 12161737 -89711432 - AluSx SINE Alu -10 302 1 213 376 23 8 chr13 12161737 12161870 -89711299 - L2 LINE L2 -600 2714 2580 603 250 138 50 chr13 12161870 12162190 -89710979 - L2 LINE L2 -679 2635 2288 264 310 160 41 chr13 12162594 12163062 -89710107 - L2 LINE L2 -410 2904 2381 525 164 100 0 chr13 12163130 12163240 -89709929 - MER20 DNA MER1_type 0 219 99 548 293 39 31 chr13 12163330 12163559 -89709610 + MIR SINE MIR 18 248 -14 463 273 33 135 chr13 12164276 12164443 -89708726 - L2 LINE L2 0 3313 3195 1807 134 28 14 chr13 12164443 12164727 -89708442 + AluJo SINE Alu 2 289 -23 463 273 33 135 chr13 12164727 12164892 -89708277 - L2 LINE L2 -118 3195 3015 517 260 194 64 chr13 12165103 12165244 -89707925 + L2 LINE L2 2573 2694 -578 2192 124 0 23 chr13 12165244 12165551 -89707618 + AluSx SINE Alu 1 300 -12 517 260 194 64 chr13 12165551 12166041 -89707128 + L2 LINE L2 2694 3272 0 245 320 128 8 chr13 12166042 12166167 -89707002 - L2 LINE L2 -681 2633 2494 415 287 17 46 chr13 12166336 12166510 -89706659 - MIR3 SINE MIR -26 182 14 1266 145 19 9 chr13 12166523 12166737 -89706432 + AluJb SINE Alu 85 300 -12 238 279 39 78 chr13 12167469 12167598 -89705571 - L2 LINE L2 -1 3271 3148 1691 154 0 50 chr13 12167662 12168011 -89705158 - AluSx SINE Alu 0 335 2 542 201 272 0 chr13 12168211 12168380 -89704789 - MLT1K LTR MaLR 0 588 374 188 193 53 70 chr13 12168413 12168470 -89704699 - L2 LINE L2 -61 3252 3197 2101 122 3 0 chr13 12168766 12169070 -89704099 - AluSp SINE Alu -8 305 1 294 283 130 0 chr13 12169363 12169501 -89703668 + MIR SINE MIR 89 244 -18 208 0 62 0 chr13 12170151 12170183 -89702986 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 12177133 12177154 -89696015 + AT_rich Low_complexity Low_complexity 1 21 0 469 324 139 21 chr13 12177455 12177887 -89695282 + L2 LINE L2 2454 2936 -378 888 65 0 0 chr13 12178422 12178529 -89694640 + U6 snRNA snRNA 1 107 0 21 57 0 0 chr13 12179803 12179838 -89693331 + GC_rich Low_complexity Low_complexity 1 35 0 413 241 86 17 chr13 12180374 12180490 -89692679 - MIR3 SINE MIR 0 208 85 482 265 26 79 chr13 12180647 12180963 -89692206 - L1ME4a LINE L1 -94 6027 5733 2177 109 0 0 chr13 12180963 12181265 -89691904 - AluSx SINE Alu -10 302 1 482 265 26 79 chr13 12181265 12181326 -89691843 - L1ME4a LINE L1 -388 5733 5670 543 322 55 0 chr13 12181386 12181588 -89691581 + MIR SINE MIR 48 260 -2 3815 136 44 6 chr13 12181852 12182512 -89690657 + L1MB3 LINE L1 5497 6181 -2 717 253 31 39 chr13 12183345 12183574 -89689595 - MIR SINE MIR 0 262 36 235 281 50 58 chr13 12183687 12183808 -89689361 + L2 LINE L2 3169 3288 -25 490 211 60 38 chr13 12183897 12184030 -89689139 + MIR SINE MIR 2 137 -125 2042 116 28 54 chr13 12184042 12184173 -89688996 + MER2 DNA MER2_type 1 134 -210 2011 100 7 0 chr13 12184173 12184488 -89688681 - AluSq SINE Alu 0 317 1 2042 116 28 54 chr13 12184488 12184708 -89688461 + MER2 DNA MER2_type 134 344 0 1993 156 38 6 chr13 12184708 12185048 -89688121 + Tigger3(Golem) DNA MER2_type 2 352 -2677 764 147 7 0 chr13 12185055 12185191 -89687978 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 401 268 21 0 chr13 12185192 12185289 -89687880 + MIR SINE MIR 164 262 0 200 372 21 21 chr13 12185385 12185479 -89687690 + L2 LINE L2 2994 3087 -185 1495 203 25 6 chr13 12185548 12185863 -89687306 - L1MD1 LINE L1 0 6242 5922 2308 87 0 0 chr13 12185915 12186224 -89686945 - AluY SINE Alu -2 309 1 2367 186 31 10 chr13 12186318 12186839 -89686330 + Charlie1 DNA MER1_type 2143 2674 -87 3200 200 50 37 chr13 12186845 12187894 -89685275 - L1MD1 LINE L1 -424 5935 4901 2036 157 81 8 chr13 12187894 12188263 -89684906 + MSTD LTR MaLR 1 396 0 3200 200 50 37 chr13 12188263 12188422 -89684747 - L1MD1 LINE L1 -1458 4901 4709 1486 168 15 25 chr13 12188422 12188696 -89684473 - AluJo SINE Alu -41 271 1 3200 200 50 37 chr13 12188696 12188793 -89684376 - L1MD1 LINE L1 -1650 4709 4615 2202 58 0 4 chr13 12188862 12189139 -89684030 + AluY SINE Alu 1 276 -35 531 0 0 0 chr13 12189142 12189201 -89683968 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 294 326 51 20 chr13 12189258 12189356 -89683813 + L2 LINE L2 3210 3310 -3 292 322 22 11 chr13 12190451 12190631 -89682538 + L2 LINE L2 2038 2219 -1095 2213 246 63 17 chr13 12191084 12191894 -89681275 + L1MB7 LINE L1 2342 3188 -2958 3605 169 55 43 chr13 12191895 12192703 -89680466 + L1MB7 LINE L1 4858 5676 -508 1773 174 0 6 chr13 12192703 12192879 -89680290 - AluJo SINE Alu -3 309 134 2097 128 0 0 chr13 12192879 12193183 -89679986 - AluSx SINE Alu -8 304 1 1773 174 0 6 chr13 12193183 12193317 -89679852 - AluJo SINE Alu -178 134 1 3605 169 55 43 chr13 12193317 12193675 -89679494 + L1MB7 LINE L1 5676 6028 -156 755 207 30 0 chr13 12193744 12193913 -89679256 + L1ME1 LINE L1 3788 3961 -2185 * 1377 220 140 12 chr13 12193910 12194310 -89678859 + L1ME1 LINE L1 5711 6161 -5 2197 59 0 10 chr13 12194336 12194624 -89678545 + AluY SINE Alu 27 311 0 488 138 73 16 chr13 12194629 12194752 -89678417 + MER69 DNA AcHobo 2250 2379 -147 741 292 137 38 chr13 12194801 12195427 -89677742 + L2 LINE L2 2100 2787 -527 997 234 58 74 chr13 12195958 12196047 -89677122 - L1MDa LINE L1 -5230 1310 1221 1965 107 10 17 chr13 12196047 12196345 -89676824 + AluSx SINE Alu 1 296 -16 997 234 58 74 chr13 12196345 12196619 -89676550 - L1MDa LINE L1 -5319 1221 953 470 121 264 0 chr13 12197495 12197586 -89675583 + FLAM_A SINE Alu 9 123 -19 421 281 124 28 chr13 12197586 12197764 -89675405 + L1MC/D LINE L1 5563 5757 -2051 1787 182 0 3 chr13 12198322 12198635 -89674534 - AluJb SINE Alu 0 312 1 6448 117 18 1 chr13 12198854 12200290 -89672879 + L1PB2 LINE L1 4689 6146 -5 25 0 0 0 chr13 12200291 12200316 -89672853 + AT_rich Low_complexity Low_complexity 1 25 0 317 248 63 109 chr13 12200568 12200740 -89672429 + MER5A DNA MER1_type 11 186 -3 641 258 0 13 chr13 12201934 12202093 -89671076 - MIR SINE MIR -87 175 19 889 219 28 0 chr13 12202266 12202444 -89670725 - MER5A DNA MER1_type -6 183 1 192 325 25 12 chr13 12203719 12203799 -89669370 - L2 LINE L2 -5 3267 3187 1455 256 127 29 chr13 12203975 12204749 -89668420 - L1ME3A LINE L1 -1 6169 5281 697 195 140 6 chr13 12204864 12205028 -89668141 - MIR SINE MIR -46 216 31 3963 100 62 79 chr13 12205924 12206615 -89666554 - LTR1 LTR ERV1 -4 781 102 2213 106 0 0 chr13 12206615 12206918 -89666251 + AluSg SINE Alu 1 303 -7 3963 100 62 79 chr13 12206918 12206958 -89666211 - LTR1 LTR ERV1 -683 102 63 187 218 146 0 chr13 12208249 12208304 -89664865 + MIR SINE MIR 47 109 -153 713 174 0 0 chr13 12208363 12208484 -89664685 + FLAM_C SINE Alu 23 143 0 818 213 0 0 chr13 12208535 12208676 -89664493 + AluSg/x SINE Alu 154 294 -16 380 306 110 38 chr13 12208890 12209207 -89663962 - L2 LINE L2 -787 2527 2188 794 146 0 31 chr13 12209242 12209372 -89663797 + FLAM_C SINE Alu 2 127 -16 278 312 172 14 chr13 12209857 12210072 -89663097 - MLT1K LTR MaLR -158 430 182 256 213 88 25 chr13 12210129 12210209 -89662960 + LTR33 LTR ERVL 3 87 -434 409 141 0 0 chr13 12210217 12210288 -89662881 + Alu SINE Alu 240 310 -2 1350 142 32 20 chr13 12210288 12210565 -89662604 - L1MA4 LINE L1 -179 6121 5841 229 194 0 75 chr13 12210676 12210743 -89662426 - HAL1 LINE L1 -2141 366 305 297 0 0 0 chr13 12210862 12210895 -89662274 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 580 301 80 18 chr13 12211324 12211550 -89661619 - LTR33 LTR ERVL -183 338 99 1222 149 20 0 chr13 12211552 12211747 -89661422 - AluJb SINE Alu -113 199 1 882 96 144 12 chr13 12211747 12211914 -89661255 + L1MA4 LINE L1 6112 6300 0 598 233 222 11 chr13 12212199 12212379 -89660790 - MLT1G1 LTR MaLR 0 595 378 358 264 44 11 chr13 12212369 12212460 -89660709 - MLT1G1 LTR MaLR -296 234 141 * 680 113 8 89 chr13 12212460 12212584 -89660585 + AluJb SINE Alu 3 116 -196 254 135 39 0 chr13 12212585 12212637 -89660532 + GA-rich Low_complexity Low_complexity 3 56 0 2725 257 116 63 chr13 12212809 12213709 -89659460 + HAL1 LINE L1 68 1080 -1427 1460 189 0 43 chr13 12213709 12214032 -89659137 - AluJo SINE Alu -3 309 1 2725 257 116 63 chr13 12214032 12214633 -89658536 + HAL1 LINE L1 1080 1648 -859 754 245 119 52 chr13 12214796 12214900 -89658269 + HAL1 LINE L1 2142 2238 -269 824 288 11 30 chr13 12214900 12215060 -89658109 + MIR SINE MIR 1 157 -105 2056 120 0 0 chr13 12215060 12215384 -89657785 + AluSx SINE Alu 1 324 0 824 288 11 30 chr13 12215384 12215489 -89657680 + MIR SINE MIR 157 262 0 754 245 119 52 chr13 12215489 12215727 -89657442 + HAL1 LINE L1 2238 2507 0 1448 151 121 0 chr13 12216216 12216481 -89656688 - AluJo SINE Alu -14 298 2 351 283 107 96 chr13 12216542 12216620 -89656549 + L1MDa LINE L1 1059 1135 -5408 2288 93 7 0 chr13 12216620 12216909 -89656260 + AluSg SINE Alu 1 291 -19 351 283 107 96 chr13 12216909 12217160 -89656009 + L1MDa LINE L1 1135 1410 -5133 338 347 80 9 chr13 12217160 12217584 -89655585 + HAL1 LINE L1 1115 1568 -939 400 276 29 77 chr13 12217590 12217760 -89655409 - MIR SINE MIR -99 163 2 229 303 40 0 chr13 12217859 12217958 -89655211 + L1ME LINE L1 5769 5871 -299 768 176 0 0 chr13 12219936 12220061 -89653108 - FLAM_C SINE Alu -18 125 1 315 283 44 76 chr13 12220152 12220300 -89652869 - L1ME LINE L1 -505 5616 5465 2269 79 17 0 chr13 12220300 12220592 -89652577 + AluSp SINE Alu 1 297 -16 315 283 44 76 chr13 12220592 12220650 -89652519 - L1ME LINE L1 -656 5465 5407 213 39 0 0 chr13 12220650 12220676 -89652493 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1349 168 45 63 chr13 12220679 12220965 -89652204 - AluJo SINE Alu -31 281 1 315 283 44 76 chr13 12220965 12221131 -89652038 - L1ME LINE L1 -716 5405 5255 248 294 68 46 chr13 12221479 12221789 -89651380 - L1ME LINE L1 -1329 4817 4495 2167 117 24 3 chr13 12221789 12222087 -89651082 - AluJb SINE Alu -8 304 1 248 294 68 46 chr13 12222087 12222170 -89650999 - L1ME LINE L1 -1651 4495 4415 2850 13 0 0 chr13 12222172 12222483 -89650686 - AluY SINE Alu 0 311 1 408 310 155 24 chr13 12222560 12222850 -89650319 - L1ME LINE L1 -428 5693 5366 1716 253 73 41 chr13 12222959 12223648 -89649521 + MER20B DNA MER1_type 54 764 -19 309 234 35 50 chr13 12223651 12223731 -89649438 + L1 LINE L1 3770 3850 -2296 2429 96 0 13 chr13 12223731 12224045 -89649124 + AluSx SINE Alu 1 310 -2 309 234 35 50 chr13 12224045 12224194 -89648975 + L1 LINE L1 3850 3992 -2154 217 159 0 23 chr13 12224210 12224254 -89648915 + T-rich Low_complexity Low_complexity 1 43 0 2805 39 0 0 chr13 12224261 12224599 -89648570 - L1PA4 LINE L1 -3 6152 5815 1338 176 46 28 chr13 12224599 12224995 -89648174 + MER74A LTR ERVL 19 473 -85 26 0 0 0 chr13 12225016 12225042 -89648127 + AT_rich Low_complexity Low_complexity 1 26 0 897 213 66 10 chr13 12225072 12225269 -89647900 - AluJo SINE Alu -104 208 1 377 183 12 0 chr13 12225269 12225351 -89647818 + MER74A LTR ERVL 475 557 -1 552 313 23 10 chr13 12225377 12225681 -89647488 + L1MD2 LINE L1 4018 4325 -1821 3741 215 75 43 chr13 12225705 12225753 -89647416 + L1MCb LINE L1 1 46 -6240 207 0 0 0 chr13 12225753 12225776 -89647393 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3741 215 75 43 chr13 12225776 12226586 -89646583 + L1MCb LINE L1 46 1077 -5209 2212 95 0 3 chr13 12226586 12226911 -89646258 + AluSq SINE Alu 2 325 0 3741 215 75 43 chr13 12226911 12227286 -89645883 + L1MCb LINE L1 1077 1438 -4848 2223 228 112 126 chr13 12227290 12228702 -89644467 + L1MC4 LINE L1 5814 7056 -752 2121 182 9 16 chr13 12228702 12228869 -89644300 + L1MB3 LINE L1 5741 5908 -275 1637 141 45 67 chr13 12228869 12229181 -89643988 + AluJb SINE Alu 2 306 -6 2121 182 9 16 chr13 12229181 12229457 -89643712 + L1MB3 LINE L1 5908 6181 -2 2223 228 112 126 chr13 12229457 12230107 -89643062 + L1MC4 LINE L1 7056 7713 -95 227 274 0 0 chr13 12230113 12230164 -89643005 + L2 LINE L2 3221 3271 -1 456 298 75 40 chr13 12231110 12231539 -89641630 + MLT1K LTR MaLR 139 582 -6 679 257 23 34 chr13 12232001 12232266 -89640903 - MIR SINE MIR 0 262 1 343 276 0 0 chr13 12232540 12232616 -89640553 + MLT1J1 LTR MaLR 243 318 -128 493 297 55 16 chr13 12232821 12233003 -89640166 + HAL1 LINE L1 1115 1303 -1204 248 315 83 6 chr13 12233049 12233230 -89639939 + HAL1 LINE L1 1375 1569 -938 1797 171 0 17 chr13 12233859 12234146 -89639023 + AluJo SINE Alu 1 282 -30 2373 247 15 15 chr13 12234403 12235144 -89638025 + L1MD2 LINE L1 4462 5202 -944 746 200 0 0 chr13 12235144 12235264 -89637905 + FLAM_A SINE Alu 1 120 -13 1384 165 14 98 chr13 12235272 12235569 -89637600 + AluJo SINE Alu 24 295 -17 46 54 0 0 chr13 12235569 12235643 -89637526 + AT_rich Low_complexity Low_complexity 1 74 0 1811 123 89 17 chr13 12235643 12235992 -89637177 - THE1C LTR MaLR 0 375 2 318 26 0 0 chr13 12235994 12236033 -89637136 + (TG)n Simple_repeat Simple_repeat 2 40 0 3390 197 78 66 chr13 12236049 12236261 -89636908 + L1MD2 LINE L1 5188 5396 -963 1924 161 3 3 chr13 12236261 12236571 -89636598 + AluSx SINE Alu 1 310 -2 3390 197 78 66 chr13 12236571 12237169 -89636000 + L1MD2 LINE L1 5396 6019 -340 2509 141 24 29 chr13 12237169 12237393 -89635776 + L1PA16 LINE L1 5712 5935 -231 1994 147 0 7 chr13 12237393 12237693 -89635476 + AluJb SINE Alu 1 298 -14 2509 141 24 29 chr13 12237693 12237923 -89635246 + L1PA16 LINE L1 5935 6164 -2 3390 197 78 66 chr13 12237923 12238232 -89634937 + L1MD2 LINE L1 6019 6323 -36 21 36 0 0 chr13 12238318 12238346 -89634823 + AT_rich Low_complexity Low_complexity 1 28 0 1754 126 115 0 chr13 12238439 12238742 -89634427 + AluSx SINE Alu 1 312 0 401 318 70 79 chr13 12239038 12239592 -89633577 + LTR67 LTR ERVL 2 550 -7 9626 217 38 16 chr13 12239724 12243429 -89629740 - L1MB4 LINE L1 -100 6080 2293 1721 182 10 17 chr13 12243620 12243911 -89629258 - AluJo SINE Alu -23 289 1 1053 133 22 22 chr13 12244476 12244657 -89628512 + AluSc SINE Alu 126 306 -3 1181 177 55 20 chr13 12244855 12245109 -89628060 - L1MD2 LINE L1 -199 6160 5898 1323 212 29 27 chr13 12245110 12245129 -89628040 - L1MDb LINE L1 -3518 2888 2871 2244 99 7 7 chr13 12245129 12245431 -89627738 - AluSq SINE Alu -11 302 1 1323 212 29 27 chr13 12245431 12245947 -89627222 - L1MDb LINE L1 -3535 2871 2355 727 212 13 7 chr13 12245947 12246098 -89627071 - AluJo SINE Alu -39 273 122 496 219 39 19 chr13 12246099 12246304 -89626865 - L1MDb LINE L1 -4043 2363 2155 1044 203 14 14 chr13 12246304 12246521 -89626648 - AluJo SINE Alu -5 307 91 2066 185 68 6 chr13 12246538 12247040 -89626129 + L1MDa LINE L1 1583 2115 -4425 893 130 23 0 chr13 12247059 12247190 -89625979 - FRAM SINE Alu -19 157 24 3192 214 81 46 chr13 12247192 12247345 -89625824 - L1MDb LINE L1 -4246 2160 2014 1876 175 3 0 chr13 12247345 12247648 -89625521 + AluJo SINE Alu 4 307 -5 3192 214 81 46 chr13 12247648 12249501 -89623668 - L1MDb LINE L1 -4392 2014 25 500 331 6 0 chr13 12249511 12249674 -89623495 - LTR33 LTR ERVL -357 164 1 2220 90 0 33 chr13 12249757 12250058 -89623111 - AluSg1 SINE Alu -18 291 1 2173 123 0 16 chr13 12250379 12250695 -89622474 + AluSx SINE Alu 1 311 -1 207 290 0 0 chr13 12250799 12250861 -89622308 + A-rich Low_complexity Low_complexity 1 62 0 191 258 76 45 chr13 12251295 12251361 -89621808 + L2 LINE L2 3173 3240 -32 788 71 35 14 chr13 12251371 12251512 -89621657 + (GAAA)n Simple_repeat Simple_repeat 3 146 0 225 132 105 0 chr13 12251529 12251567 -89621602 - L2 LINE L2 -10 3262 3221 208 143 0 0 chr13 12251595 12251630 -89621539 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 184 378 0 40 chr13 12252113 12252187 -89620982 - MIR SINE MIR -122 86 16 2145 79 68 0 chr13 12252520 12252798 -89620371 - AluSp SINE Alu -16 297 1 478 132 0 13 chr13 12253521 12253597 -89619572 - FLAM_A SINE Alu -25 117 43 3431 73 30 0 chr13 12253814 12253858 -89619311 - MLT2A2 LTR ERVL 0 453 412 505 0 31 0 chr13 12253858 12253923 -89619246 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 3431 73 30 0 chr13 12253923 12254318 -89618851 - MLT2A2 LTR ERVL -41 412 1 466 343 29 17 chr13 12254588 12254827 -89618342 + MIR SINE MIR 20 261 -1 988 143 53 11 chr13 12255505 12255694 -89617475 + L1MB2 LINE L1 5971 6167 -4 206 317 163 57 chr13 12255888 12256011 -89617158 + L2 LINE L2 3136 3271 -1 509 198 32 226 chr13 12256023 12256102 -89617067 - MIR SINE MIR -33 229 136 1476 199 10 27 chr13 12256102 12256261 -89616908 - AluJo SINE Alu -20 292 139 2413 49 7 20 chr13 12256261 12256566 -89616603 - AluY SINE Alu -10 301 1 1476 199 10 27 chr13 12256566 12256703 -89616466 - AluJo SINE Alu -173 139 1 509 198 32 226 chr13 12256703 12256906 -89616263 - MIR SINE MIR -126 136 2 631 77 62 26 chr13 12257125 12257441 -89615728 + (TG)n Simple_repeat Simple_repeat 1 327 0 373 258 67 33 chr13 12257441 12257561 -89615608 + L2 LINE L2 3165 3288 -25 225 235 0 20 chr13 12258124 12258175 -89614994 - MER2 DNA MER2_type 0 345 296 293 229 0 0 chr13 12258179 12258240 -89614929 + MER2 DNA MER2_type 282 342 -3 3904 98 7 0 chr13 12259559 12260109 -89613060 - MER41A LTR ERV1 0 554 1 2423 96 0 0 chr13 12260629 12260931 -89612238 - AluSx SINE Alu -10 302 1 25 0 0 0 chr13 12261266 12261291 -89611878 + AT_rich Low_complexity Low_complexity 1 25 0 1743 164 0 34 chr13 12261884 12262177 -89610992 + AluJo SINE Alu 2 284 -28 199 308 56 19 chr13 12262279 12262386 -89610783 - MIR SINE MIR -6 256 146 2135 138 0 6 chr13 12262505 12262817 -89610352 + AluSg SINE Alu 1 310 0 235 277 46 46 chr13 12262818 12262948 -89610221 + MER5B DNA MER1_type 29 158 -20 * 327 284 43 50 chr13 12262837 12262978 -89610191 - MER5A DNA MER1_type -48 141 2 215 206 176 0 chr13 12264049 12264117 -89609052 - MIR SINE MIR -12 250 171 2305 104 3 0 chr13 12264202 12264509 -89608660 + AluSx SINE Alu 1 308 -4 2013 131 28 0 chr13 12264509 12264800 -89608369 + AluSx SINE Alu 3 301 -11 571 258 30 0 chr13 12264800 12264932 -89608237 + MIR SINE MIR 38 173 -89 322 301 37 15 chr13 12265006 12265142 -89608027 - MIR SINE MIR -92 170 32 24 0 0 0 chr13 12266107 12266131 -89607038 + AT_rich Low_complexity Low_complexity 1 24 0 2315 61 0 14 chr13 12266131 12266427 -89606742 - AluY SINE Alu -19 292 1 195 42 0 0 chr13 12267266 12267290 -89605879 + (TAA)n Simple_repeat Simple_repeat 1 24 0 847 168 0 0 chr13 12267648 12267773 -89605396 - FLAM_C SINE Alu -18 125 1 372 209 276 8 chr13 12267995 12268129 -89605040 + MLT1H LTR MaLR 376 545 -4 266 234 0 0 chr13 12268281 12268345 -89604824 - LTR33A LTR ERVL -2 521 458 967 205 0 0 chr13 12268651 12268822 -89604347 + FRAM SINE Alu 1 170 -6 297 270 72 40 chr13 12269951 12270103 -89603066 + L1ME4a LINE L1 5964 6120 -1 2465 69 0 3 chr13 12270109 12270414 -89602755 + AluY SINE Alu 1 304 -7 22 35 0 0 chr13 12270468 12270497 -89602672 + AT_rich Low_complexity Low_complexity 1 29 0 188 284 112 95 chr13 12270908 12271256 -89601913 - L2 LINE L2 -5 3267 2914 291 197 33 0 chr13 12271283 12271344 -89601825 - MLT1E2 LTR MaLR 0 626 564 2257 112 0 10 chr13 12271465 12271768 -89601401 + AluSq SINE Alu 1 300 -13 711 154 119 68 chr13 12272152 12272342 -89600827 + MLT1D LTR MaLR 308 533 -9 402 364 12 8 chr13 12272486 12272728 -89600441 + MLT1D-int LTR MaLR 290 532 -839 730 211 17 42 chr13 12273276 12273540 -89599629 - AluSg1 SINE Alu 0 307 50 2163 126 0 0 chr13 12273699 12274001 -89599168 - AluSx SINE Alu -10 302 1 440 307 62 0 chr13 12274122 12274314 -89598855 + MIR SINE MIR 48 251 -11 3858 135 44 6 chr13 12274587 12275247 -89597922 + L1MB3 LINE L1 5497 6181 -2 612 253 31 39 chr13 12276080 12276309 -89596860 - MIR SINE MIR 0 262 36 190 281 50 58 chr13 12276422 12276543 -89596626 + L2 LINE L2 3169 3288 -25 433 216 69 9 chr13 12276632 12276748 -89596421 + MIR SINE MIR 2 124 -138 2070 113 28 54 chr13 12276777 12276908 -89596261 + MER2 DNA MER2_type 1 134 -210 2132 100 7 0 chr13 12276908 12277223 -89595946 - AluSq SINE Alu 0 317 1 2070 113 28 54 chr13 12277223 12277443 -89595726 + MER2 DNA MER2_type 134 344 0 2009 156 38 6 chr13 12277443 12277783 -89595386 + Tigger3(Golem) DNA MER2_type 2 352 -2677 800 143 7 0 chr13 12277790 12277930 -89595239 + (TAGA)n Simple_repeat Simple_repeat 2 142 0 355 268 21 0 chr13 12277931 12278028 -89595141 + MIR SINE MIR 164 262 0 1489 206 25 6 chr13 12278287 12278602 -89594567 - L1MD1 LINE L1 0 6242 5922 2415 94 0 0 chr13 12278654 12278962 -89594207 - AluSx SINE Alu -4 308 1 1050 272 93 28 chr13 12279444 12279972 -89593197 + MLT1G LTR MaLR 3 555 0 1175 209 99 4 chr13 12279976 12280249 -89592920 - MLT1D LTR MaLR 0 505 207 300 102 0 0 chr13 12280254 12280303 -89592866 + (TG)n Simple_repeat Simple_repeat 1 49 0 374 228 12 84 chr13 12280332 12280372 -89592797 - MLT1D LTR MaLR -269 236 195 252 0 0 0 chr13 12280372 12280400 -89592769 + (TA)n Simple_repeat Simple_repeat 1 28 0 2069 126 3 0 chr13 12280401 12280687 -89592482 - AluSq SINE Alu -12 301 15 374 228 12 84 chr13 12280687 12280776 -89592393 - MLT1D LTR MaLR -310 195 117 1832 179 0 0 chr13 12280776 12281072 -89592097 - AluJb SINE Alu -16 296 1 374 228 12 84 chr13 12281072 12281106 -89592063 - MLT1D LTR MaLR -388 117 82 186 143 0 0 chr13 12281116 12281151 -89592018 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 356 238 25 12 chr13 12281153 12281233 -89591936 - MLT1D LTR MaLR -422 83 3 448 255 39 13 chr13 12281256 12281409 -89591760 - L1ME4a LINE L1 -209 5912 5756 767 178 0 20 chr13 12281414 12281560 -89591609 - L1PA16 LINE L1 0 6166 6024 186 43 0 0 chr13 12282699 12282722 -89590447 + (CTG)n Simple_repeat Simple_repeat 3 25 0 2025 110 11 4 chr13 12283529 12283810 -89589359 + AluSq SINE Alu 1 283 -30 1695 168 30 17 chr13 12283841 12284139 -89589030 + AluJo SINE Alu 1 302 -10 21 36 0 0 chr13 12288012 12288040 -89585129 + GC_rich Low_complexity Low_complexity 1 28 0 3325 180 96 48 chr13 12288656 12290111 -89583058 - MER52A LTR ERV1 -1 1754 1 624 269 35 15 chr13 12290264 12290465 -89582704 - MIR SINE MIR -46 216 12 1177 181 0 5 chr13 12290605 12290798 -89582371 + AluJo SINE Alu 1 192 -120 2260 105 3 0 chr13 12290953 12291249 -89581920 + AluSx SINE Alu 1 297 -15 476 326 57 5 chr13 12291561 12291861 -89581308 - L1ME4a LINE L1 -482 5639 5318 760 186 0 0 chr13 12291883 12292007 -89581162 + FLAM_C SINE Alu 2 125 -18 333 0 0 0 chr13 12292212 12292249 -89580920 + (TG)n Simple_repeat Simple_repeat 2 38 0 1984 128 26 26 chr13 12292636 12292948 -89580221 - AluSx SINE Alu 0 312 1 7719 78 6 2 chr13 12293279 12295038 -89578131 + L1PA7 LINE L1 4309 6073 -81 307 122 9 0 chr13 12295036 12295089 -89578080 + L1P3 LINE L1 5807 5861 -294 * 410 212 38 53 chr13 12295146 12295278 -89577891 + MLT2F LTR ERVL 534 663 0 1010 158 33 95 chr13 12295777 12296018 -89577151 + MLT2B1 LTR ERVL 295 520 0 3210 245 29 7 chr13 12296022 12296750 -89576419 + L1MC/D LINE L1 3306 4057 -2089 1150 208 128 29 chr13 12296750 12297062 -89576107 - MER2 DNA MER2_type 0 344 2 3210 245 29 7 chr13 12297062 12297186 -89575983 + L1MC/D LINE L1 4057 4177 -1969 2185 75 43 0 chr13 12297225 12297504 -89575665 + AluSx SINE Alu 21 311 -1 650 195 0 65 chr13 12297636 12297761 -89575408 + L1MC/D LINE L1 4989 5100 -1046 2322 93 3 0 chr13 12297761 12298062 -89575107 + AluY SINE Alu 1 302 -9 650 195 0 65 chr13 12298062 12298121 -89575048 + L1MC/D LINE L1 5100 5161 -985 5439 222 24 7 chr13 12298127 12298647 -89574522 + L1 LINE L1 2410 2920 -3226 2427 167 47 0 chr13 12298647 12299054 -89574115 + MSTB LTR MaLR 1 426 0 5439 222 24 7 chr13 12299054 12299890 -89573279 + L1 LINE L1 2920 3788 -2358 180 143 0 0 chr13 12300434 12300476 -89572693 + (ATG)n Simple_repeat Simple_repeat 3 44 0 5999 153 30 83 chr13 12301122 12301775 -89571394 + L1PA16 LINE L1 3775 4462 -1704 591 103 0 0 chr13 12301775 12301862 -89571307 - Alu SINE Alu 0 311 225 5999 153 30 83 chr13 12301862 12303672 -89569497 + L1PA16 LINE L1 4462 6162 -4 1976 138 27 6 chr13 12303654 12304071 -89569098 + L1MC/D LINE L1 5149 5568 -743 * 1269 269 40 73 chr13 12304071 12304551 -89568618 - ERVL LTR ERVL -621 5143 4680 198 0 0 0 chr13 12304589 12304611 -89568558 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 256 343 149 0 chr13 12304781 12304956 -89568213 + L2 LINE L2 2435 2635 -679 2734 188 81 29 chr13 12304956 12305176 -89567993 - L1MDa LINE L1 -4071 2469 2262 2028 137 3 3 chr13 12305176 12305468 -89567701 - AluSx SINE Alu -20 292 1 2734 188 81 29 chr13 12305468 12306566 -89566603 - L1MDa LINE L1 -4278 2262 1222 2139 112 0 10 chr13 12306566 12306862 -89566307 + AluSx SINE Alu 1 293 -19 2734 188 81 29 chr13 12306862 12307408 -89565761 - L1MDa LINE L1 -5318 1222 26 493 302 64 17 chr13 12307547 12307954 -89565215 - L1M4 LINE L1 -1095 5051 4626 542 179 0 45 chr13 12307974 12308086 -89565083 + L1ME1 LINE L1 6054 6160 -6 1921 303 71 16 chr13 12308111 12308856 -89564313 + ERVL LTR ERVL 1858 2643 -3121 2720 234 18 41 chr13 12309252 12310012 -89563157 - L1ME1 LINE L1 -7 6228 5486 5761 218 69 56 chr13 12310020 12310621 -89562548 - L1M4 LINE L1 -4985 1870 1278 218 32 32 0 chr13 12310621 12310652 -89562517 + (CCA)n Simple_repeat Simple_repeat 1 32 0 5761 218 69 56 chr13 12310652 12311850 -89561319 - L1M4 LINE L1 -5577 1278 79 1204 194 102 35 chr13 12311850 12312133 -89561036 + AluJb SINE Alu 1 302 0 5761 218 69 56 chr13 12312133 12312203 -89560966 - L1M4 LINE L1 -6776 79 11 2384 216 65 71 chr13 12312209 12312617 -89560552 - L1ME1 LINE L1 -1258 4957 4548 1923 156 0 7 chr13 12312617 12312906 -89560263 - AluJb SINE Alu -25 287 1 2384 216 65 71 chr13 12312906 12313360 -89559809 - L1ME1 LINE L1 -1667 4548 4100 4069 263 57 33 chr13 12313686 12315247 -89557922 - L1ME1 LINE L1 -4761 1635 37 286 257 95 0 chr13 12315970 12316044 -89557125 + ERVL LTR ERVL 2964 3044 -2720 289 267 95 19 chr13 12316055 12316160 -89557009 - MER94 DNA DNA -21 113 1 1141 324 44 15 chr13 12316169 12316650 -89556519 + ERVL LTR ERVL 3046 3540 -2224 3358 277 109 18 chr13 12316775 12318021 -89555148 + ERVL LTR ERVL 3728 5087 -677 262 281 16 0 chr13 12318128 12318192 -89554977 - HERV16 LTR ERVL -3881 1115 1051 557 291 181 0 chr13 12318196 12318423 -89554746 - HERV16 LTR ERVL -4708 288 21 643 298 118 28 chr13 12318437 12318837 -89554332 - LTR16A LTR ERVL -4 446 11 1468 206 31 17 chr13 12318863 12319032 -89554137 - L1ME LINE L1 -416 5748 5583 2399 106 0 0 chr13 12319032 12319344 -89553825 + AluSx SINE Alu 1 312 0 1468 206 31 17 chr13 12319344 12319534 -89553635 - L1ME LINE L1 -581 5583 5384 5803 140 34 17 chr13 12319538 12319594 -89553575 - Tigger3b DNA MER2_type -1797 1231 1177 2131 82 68 0 chr13 12319594 12319873 -89553296 - AluSp SINE Alu -15 298 1 5803 140 34 17 chr13 12319873 12320892 -89552277 - Tigger3b DNA MER2_type -1851 1177 137 2143 115 0 11 chr13 12321088 12321406 -89551763 + AluSx SINE Alu 1 315 0 31 26 0 0 chr13 12321534 12321572 -89551597 + AT_rich Low_complexity Low_complexity 1 38 0 522 141 12 0 chr13 12321593 12321678 -89551491 + MSTB1 LTR MaLR 1 86 -346 232 234 31 0 chr13 12321749 12321813 -89551356 - L1ME LINE L1 -195 5926 5861 2651 123 33 12 chr13 12321830 12322253 -89550916 - MSTB1 LTR MaLR 0 432 1 25 75 0 0 chr13 12322254 12322307 -89550862 + AT_rich Low_complexity Low_complexity 1 53 0 255 257 9 44 chr13 12322871 12322984 -89550185 - MLT1K LTR MaLR -356 232 124 469 270 57 6 chr13 12323349 12323508 -89549661 - ERVL LTR ERVL -374 5390 5224 372 333 119 11 chr13 12323529 12323706 -89549463 + MER91A DNA MER1_type 1 196 0 2500 111 16 3 chr13 12323951 12324288 -89548881 - L1PB1 LINE L1 -26 6125 5781 351 0 0 0 chr13 12324288 12324327 -89548842 + (TG)n Simple_repeat Simple_repeat 2 40 0 2500 111 16 3 chr13 12324327 12324376 -89548793 - L1PB1 LINE L1 -370 5781 5734 494 285 69 34 chr13 12324376 12324667 -89548502 - ERVL LTR ERVL -785 4979 4679 1895 156 12 92 chr13 12324853 12325094 -89548075 - MLT1B LTR MaLR 0 390 196 2157 92 65 0 chr13 12325094 12325386 -89547783 - AluSp SINE Alu -2 311 1 1895 156 12 92 chr13 12325386 12325568 -89547601 - MLT1B LTR MaLR -194 196 1 180 77 0 0 chr13 12325740 12325766 -89547403 + (CAAAAA)n Simple_repeat Simple_repeat 6 31 0 245 218 73 18 chr13 12325803 12325913 -89547256 - L1ME LINE L1 -730 5432 5317 578 270 72 31 chr13 12327526 12327748 -89545421 + MIR SINE MIR 3 233 -29 2169 96 21 3 chr13 12328045 12328336 -89544833 + AluSx SINE Alu 1 296 -16 328 306 52 52 chr13 12328888 12329022 -89544147 - MIR3 SINE MIR -54 154 21 1965 122 0 7 chr13 12329448 12329744 -89543425 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 12330573 12330597 -89542572 + AT_rich Low_complexity Low_complexity 1 24 0 674 239 86 29 chr13 12334208 12334417 -89538752 + MIR SINE MIR 36 256 -6 * 806 268 20 10 chr13 12334416 12334614 -89538555 + MIR SINE MIR 53 252 -10 847 249 82 25 chr13 12334619 12334936 -89538233 + MER46C DNA MER2_type 1 335 -3 273 250 34 45 chr13 12335327 12335415 -89537754 + MIR3 SINE MIR 110 196 -12 306 164 0 0 chr13 12337235 12337290 -89535879 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 208 311 120 44 chr13 12337801 12338026 -89535143 + L2 LINE L2 3030 3271 -1 767 206 47 6 chr13 12338957 12339127 -89534042 + MER5B DNA MER1_type 2 178 0 2084 120 16 3 chr13 12339642 12339950 -89533219 - AluSx SINE Alu 0 312 1 451 260 66 15 chr13 12340280 12340476 -89532693 - L1ME LINE L1 -302 5819 5614 317 291 45 27 chr13 12340674 12340784 -89532385 + L2 LINE L2 3185 3296 -17 189 121 0 0 chr13 12340826 12340859 -89532310 + (CA)n Simple_repeat Simple_repeat 2 34 0 246 265 22 88 chr13 12340866 12341183 -89531986 - L1ME LINE L1 -841 5305 5010 387 246 156 45 chr13 12341511 12341710 -89531459 + L1MC4 LINE L1 7314 7534 -508 349 278 41 18 chr13 12341774 12341943 -89531226 + L1MC4 LINE L1 7742 7914 -128 1936 216 97 94 chr13 12342179 12343630 -89529539 + Charlie1a DNA MER1_type 1 1455 0 822 256 78 88 chr13 12343814 12343998 -89529171 + MLT1J LTR MaLR 4 188 -323 1984 80 73 14 chr13 12343998 12344284 -89528885 + AluSg1 SINE Alu 1 303 -6 822 256 78 88 chr13 12344284 12344315 -89528854 + MLT1J LTR MaLR 188 218 -293 2202 108 14 0 chr13 12344315 12344611 -89528558 - AluSx SINE Alu -12 300 1 822 256 78 88 chr13 12344611 12344781 -89528388 + MLT1J LTR MaLR 218 386 -125 256 291 0 0 chr13 12345252 12345307 -89527862 - L2 LINE L2 -8 3264 3210 610 148 68 43 chr13 12345418 12345580 -89527589 - Charlie1 DNA MER1_type -1 2760 2595 1955 209 127 52 chr13 12345661 12346578 -89526591 - L1MC5 LINE L1 -205 7756 6772 667 247 157 1 chr13 12346708 12346798 -89526371 + MER77 LTR ERV1 154 229 -333 246 32 0 0 chr13 12346798 12346829 -89526340 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 667 247 157 1 chr13 12346829 12346955 -89526214 + MER77 LTR ERV1 229 367 -195 * 774 268 110 20 chr13 12346950 12347249 -89525920 + MER77 LTR ERV1 274 599 -6 516 256 6 26 chr13 12347331 12347487 -89525682 - L1MC5 LINE L1 -1184 6777 6625 489 329 160 30 chr13 12347535 12348009 -89525160 - L1MC4a LINE L1 -1226 6582 6047 870 183 0 0 chr13 12348120 12348257 -89524912 - FLAM_C SINE Alu -6 137 1 295 365 47 18 chr13 12348552 12348722 -89524447 + L2 LINE L2 2101 2275 -1039 769 279 95 29 chr13 12349226 12349677 -89523492 + L1ME4a LINE L1 5495 5994 -127 879 153 0 0 chr13 12349677 12349808 -89523361 + FLAM_C SINE Alu 1 131 -2 769 279 95 29 chr13 12349808 12349934 -89523235 + L1ME4a LINE L1 5994 6110 -11 239 294 65 22 chr13 12349964 12350056 -89523113 - L2 LINE L2 -8 3264 3169 383 204 116 35 chr13 12350301 12350473 -89522696 - HAL1 LINE L1 -1 2506 2321 293 233 27 0 chr13 12351686 12351759 -89521410 - MIR SINE MIR -110 152 78 223 217 0 0 chr13 12354374 12354420 -89518749 + MIR SINE MIR 146 191 -71 419 184 72 7 chr13 12355516 12355668 -89517501 - Zaphod DNA AcHobo -41 3990 3829 396 167 11 0 chr13 12355732 12355822 -89517347 - Zaphod DNA AcHobo -323 3708 3618 235 184 0 0 chr13 12356088 12356126 -89517043 - MER2 DNA MER2_type -25 320 283 254 157 0 0 chr13 12356178 12356229 -89516940 - MER2 DNA MER2_type -135 210 160 757 122 151 0 chr13 12356277 12356416 -89516753 - MER2 DNA MER2_type -179 166 7 1372 245 82 3 chr13 12356490 12356958 -89516211 - Zaphod DNA AcHobo -3376 655 102 533 223 120 54 chr13 12357087 12357271 -89515898 - MIR SINE MIR -60 202 7 832 163 0 0 chr13 12359275 12359398 -89513771 + FLAM_A SINE Alu 6 128 -14 250 329 26 0 chr13 12360820 12360896 -89512273 - MIR3 SINE MIR -39 169 92 384 77 0 0 chr13 12361451 12361503 -89511666 + (TA)n Simple_repeat Simple_repeat 1 52 0 28 48 0 0 chr13 12361543 12361585 -89511584 + AT_rich Low_complexity Low_complexity 1 42 0 296 279 132 37 chr13 12361629 12361819 -89511350 - MIR SINE MIR -27 235 28 1953 141 10 0 chr13 12362227 12362524 -89510645 + AluJo SINE Alu 1 300 -12 414 297 138 0 chr13 12362524 12362669 -89510500 + MIR SINE MIR 24 188 -74 745 174 65 131 chr13 12364303 12364578 -89508591 - L2 LINE L2 0 3313 3057 660 214 61 72 chr13 12365408 12365670 -89507499 - L2 LINE L2 0 3313 3055 936 235 73 17 chr13 12365673 12366127 -89507042 + MLT1F1 LTR MaLR 4 566 -1 362 303 155 0 chr13 12366130 12366285 -89506884 - L2 LINE L2 -258 3055 2877 805 272 112 0 chr13 12366452 12366684 -89506485 - MIR SINE MIR -3 259 2 2019 74 0 4 chr13 12367016 12367299 -89505870 + AluSg SINE Alu 28 309 0 730 252 61 8 chr13 12367745 12367991 -89505178 - MIR SINE MIR -2 260 2 1881 139 20 33 chr13 12368076 12368379 -89504790 + AluJb SINE Alu 1 299 -13 342 222 105 59 chr13 12368757 12368910 -89504259 + L2 LINE L2 3132 3291 -22 207 0 0 0 chr13 12369449 12369472 -89503697 + (A)n Simple_repeat Simple_repeat 1 23 0 316 316 217 25 chr13 12371376 12371948 -89501221 + L2 LINE L2 2013 2694 -620 278 328 106 93 chr13 12372034 12372305 -89500864 + L2 LINE L2 2855 3134 -138 1709 153 58 4 chr13 12372305 12372579 -89500590 - AluJb SINE Alu -23 289 1 278 328 106 93 chr13 12372579 12372703 -89500466 + L2 LINE L2 3134 3255 -17 185 339 51 0 chr13 12372813 12372872 -89500297 - L2 LINE L2 -3 3310 3249 309 164 45 0 chr13 12373709 12373776 -89499393 - MLT1K LTR MaLR -10 578 509 216 0 0 0 chr13 12376679 12376703 -89496466 + (CGG)n Simple_repeat Simple_repeat 3 26 0 197 319 66 22 chr13 12378571 12378662 -89494507 - L2 LINE L2 -504 2810 2716 272 250 342 22 chr13 12378759 12378943 -89494226 + MIR SINE MIR 13 255 -7 334 311 192 11 chr13 12379109 12379286 -89493883 + MIR SINE MIR 51 259 -3 2189 98 3 3 chr13 12380154 12380440 -89492729 + AluSg SINE Alu 1 286 -24 229 302 16 0 chr13 12380540 12380603 -89492566 + L2 LINE L2 3195 3258 -55 2364 115 25 99 chr13 12380623 12381259 -89491910 + MER4E LTR ERV1 5 766 0 4325 158 64 21 chr13 12381454 12382278 -89490891 + MER21B LTR ERV1 1 860 -3 3525 153 67 30 chr13 12382517 12383216 -89489953 - LTR8A LTR ERV1 -2 725 1 2151 121 13 0 chr13 12383402 12383707 -89489462 - AluSx SINE Alu -3 309 1 451 195 7 71 chr13 12384276 12384324 -89488845 + Charlie5 DNA MER1_type 2442 2492 -93 1458 172 100 4 chr13 12384324 12384585 -89488584 + AluJb SINE Alu 1 286 -26 451 195 7 71 chr13 12384585 12384690 -89488479 + Charlie5 DNA MER1_type 2492 2585 0 282 359 76 31 chr13 12385126 12385349 -89487820 + L2 LINE L2 1515 1747 -1567 362 215 107 27 chr13 12385379 12385528 -89487641 - Charlie5 DNA MER1_type -104 2508 2348 281 211 66 0 chr13 12385522 12385598 -89487571 - Charlie5 DNA MER1_type -2412 200 120 * 4403 149 77 13 chr13 12385612 12386732 -89486437 - L1MB2 LINE L1 -28 6143 4954 2193 111 0 16 chr13 12387741 12388048 -89485121 + AluSx SINE Alu 1 302 -10 1787 148 46 0 chr13 12388104 12388367 -89484802 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr13 12388379 12388399 -89484770 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 30 45 0 0 chr13 12388466 12388510 -89484659 + AT_rich Low_complexity Low_complexity 1 44 0 299 303 90 0 chr13 12388773 12388862 -89484307 - L2 LINE L2 -9 3304 3208 575 310 11 16 chr13 12389072 12389256 -89483913 - L2 LINE L2 -18 3295 3113 575 310 11 16 chr13 12390044 12390228 -89482941 - L2 LINE L2 -18 3295 3113 212 179 0 0 chr13 12391752 12391791 -89481378 + T-rich Low_complexity Low_complexity 1 39 0 202 322 100 11 chr13 12392675 12392765 -89480404 - MIR3 SINE MIR -26 182 85 28 48 0 0 chr13 12393299 12393341 -89479828 + AT_rich Low_complexity Low_complexity 1 42 0 28 29 0 0 chr13 12393473 12393508 -89479661 + AT_rich Low_complexity Low_complexity 1 35 0 2232 61 29 0 chr13 12393919 12394197 -89478972 - AluY SINE Alu -25 286 1 23 0 0 0 chr13 12395170 12395193 -89477976 + AT_rich Low_complexity Low_complexity 1 23 0 2076 221 99 20 chr13 12395255 12395928 -89477241 + L1ME2 LINE L1 5412 6134 -30 488 183 183 0 chr13 12395929 12396033 -89477136 + FLAM_A SINE Alu 5 127 -6 918 191 0 25 chr13 12396314 12396476 -89476693 + FRAM SINE Alu 1 158 -8 636 292 74 19 chr13 12396883 12397099 -89476070 + MIR SINE MIR 22 249 -13 535 279 155 35 chr13 12397231 12397521 -89475648 + MLT1K LTR MaLR 92 416 -172 259 236 0 2 chr13 12397549 12397608 -89475561 + MLT1L LTR MaLR 522 606 -9 481 190 34 87 chr13 12397802 12397964 -89475205 + MER33 DNA MER1_type 1 146 -89 301 273 10 40 chr13 12398004 12398103 -89475066 + L2 LINE L2 3177 3272 0 284 159 0 16 chr13 12399319 12399382 -89473787 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 730 238 113 25 chr13 12399430 12399670 -89473499 + MIR SINE MIR 1 261 -1 194 382 0 0 chr13 12400032 12400100 -89473069 - MIR3 SINE MIR -24 184 117 1751 155 78 0 chr13 12401998 12402333 -89470836 - Tigger2 DNA MER2_type -2357 361 1 189 0 0 0 chr13 12402983 12403004 -89470165 + (CA)n Simple_repeat Simple_repeat 2 22 0 1348 89 0 0 chr13 12403006 12403175 -89469994 + AluSq SINE Alu 136 304 -9 232 312 121 7 chr13 12403187 12403328 -89469841 - L2 LINE L2 -1307 2007 1851 3172 266 120 23 chr13 12403707 12405132 -89468037 + L2 LINE L2 1759 3312 -1 181 289 104 44 chr13 12405115 12405250 -89467919 - L2 LINE L2 -881 2433 2291 * 245 138 0 69 chr13 12405710 12405768 -89467401 - L1MC4 LINE L1 -1340 6702 6649 1672 135 74 34 chr13 12406208 12406505 -89466664 + AluSx SINE Alu 1 309 -3 1722 57 0 5 chr13 12406574 12406783 -89466386 + AluY SINE Alu 87 294 -17 463 229 179 0 chr13 12407694 12407834 -89465335 + Charlie1b DNA MER1_type 50 214 -309 3337 146 82 16 chr13 12408009 12408647 -89464522 - L1MD1 LINE L1 0 6242 5563 2428 81 0 3 chr13 12408687 12408997 -89464172 - AluY SINE Alu -1 310 2 327 175 10 82 chr13 12410613 12410710 -89462459 + L1MC4 LINE L1 6614 6703 -1339 195 100 0 0 chr13 12410719 12410749 -89462420 + (TA)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr13 12411260 12411289 -89461880 + AT_rich Low_complexity Low_complexity 1 29 0 2219 105 10 0 chr13 12411289 12411594 -89461575 - AluY SINE Alu -3 308 1 2095 137 0 10 chr13 12411596 12411902 -89461267 - AluSx SINE Alu -9 303 1 1688 176 10 13 chr13 12412024 12412331 -89460838 - AluJo SINE Alu -6 306 1 645 180 7 50 chr13 12412336 12412475 -89460694 - FLAM_C SINE Alu 0 133 1 1793 106 30 0 chr13 12413182 12413447 -89459722 + AluSq SINE Alu 1 273 -40 783 0 0 0 chr13 12413479 12413566 -89459603 + (CA)n Simple_repeat Simple_repeat 1 87 0 2185 51 0 4 chr13 12413835 12414108 -89459061 - L1PA7 LINE L1 -4 6150 5879 1754 139 36 27 chr13 12414409 12414710 -89458459 + AluJb SINE Alu 1 304 -8 364 294 110 16 chr13 12415722 12415977 -89457192 + L1ME4a LINE L1 5552 5830 -291 274 183 256 7 chr13 12416394 12416476 -89456693 - MIR3 SINE MIR -4 204 104 24 67 0 0 chr13 12417410 12417455 -89455714 + AT_rich Low_complexity Low_complexity 1 45 0 282 242 65 0 chr13 12417572 12417634 -89455535 - L2 LINE L2 0 3313 3248 1249 226 186 26 chr13 12417768 12418269 -89454900 - MLT1G LTR MaLR 0 590 10 817 96 16 0 chr13 12419164 12419289 -89453880 - MER30 DNA MER1_type -103 127 1 672 114 124 6 chr13 12419456 12419620 -89453549 + L1M4 LINE L1 5225 5412 -743 * 1256 199 71 6 chr13 12419598 12419935 -89453234 - L1M4 LINE L1 -805 5839 5481 870 231 78 36 chr13 12419932 12419988 -89453181 - L1M4c LINE L1 -3344 3038 2986 * 1770 163 6 32 chr13 12419988 12420301 -89452868 - AluSx SINE Alu -7 305 1 870 231 78 36 chr13 12420301 12420603 -89452566 - L1M4c LINE L1 -3396 2986 2665 1000 204 109 6 chr13 12420605 12420973 -89452196 - L1M4c LINE L1 -3851 2531 2121 1237 191 211 56 chr13 12420980 12421426 -89451743 - MLT2B2 LTR ERVL 0 515 1 2498 218 60 34 chr13 12421440 12422299 -89450870 - L1M4c LINE L1 -4429 2134 1087 501 134 0 0 chr13 12422299 12422381 -89450788 - AluSp/q SINE Alu -6 307 226 1175 105 6 23 chr13 12422381 12422552 -89450617 - AluSx SINE Alu -122 190 23 2246 163 102 39 chr13 12422561 12423155 -89450014 - L1M4 LINE L1 -4893 1752 724 1417 221 58 120 chr13 12423176 12423801 -89449368 - L1M4 LINE L1 -5955 587 2 379 383 0 0 chr13 12424959 12425139 -89448030 + G-rich Low_complexity Low_complexity 1 180 0 200 365 0 0 chr13 12425163 12425237 -89447932 + G-rich Low_complexity Low_complexity 1 74 0 270 264 11 23 chr13 12425447 12425534 -89447635 + MIR SINE MIR 168 253 -9 730 171 0 14 chr13 12425741 12425887 -89447282 - L1MB7 LINE L1 -44 6140 5997 235 312 153 35 chr13 12425990 12426272 -89446897 + L2 LINE L2 1846 2160 -1154 27 29 0 0 chr13 12426680 12426714 -89446455 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 12429046 12429070 -89444099 + AT_rich Low_complexity Low_complexity 1 24 0 475 297 84 25 chr13 12429314 12429538 -89443631 - MIR SINE MIR -17 245 8 341 283 76 22 chr13 12431566 12431658 -89441511 - L2 LINE L2 -42 3230 3134 189 273 0 0 chr13 12431939 12431983 -89441186 + L2 LINE L2 3269 3312 -1 473 306 156 67 chr13 12433716 12434177 -89438992 + L3 LINE CR1 432 933 -644 341 44 0 0 chr13 12434439 12434484 -89438685 + MADE1 DNA Mariner 36 80 0 465 321 114 5 chr13 12434705 12434889 -89438280 - MIR SINE MIR -51 211 8 222 118 0 0 chr13 12437298 12437332 -89435837 + (TA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr13 12440301 12440332 -89432837 + AT_rich Low_complexity Low_complexity 1 31 0 579 263 98 16 chr13 12440523 12440717 -89432452 + MIR SINE MIR 53 262 0 3842 172 81 10 chr13 12442202 12442635 -89430534 + L1MB8 LINE L1 4947 5348 -830 1697 167 21 11 chr13 12442635 12442917 -89430252 + AluJb SINE Alu 1 285 -27 3842 172 81 10 chr13 12442917 12443619 -89429550 + L1MB8 LINE L1 5348 6162 -16 260 173 64 27 chr13 12443635 12443745 -89429424 + L1ME4a LINE L1 6005 6118 -3 41 21 0 0 chr13 12446237 12446285 -89426884 + AT_rich Low_complexity Low_complexity 1 48 0 853 167 73 0 chr13 12446592 12446742 -89426427 - FRAM SINE Alu -5 161 1 258 32 0 0 chr13 12447144 12447175 -89425994 + (TG)n Simple_repeat Simple_repeat 2 32 0 793 246 77 5 chr13 12447611 12447818 -89425351 + MER58A DNA MER1_type 1 222 -2 502 236 273 0 chr13 12448002 12448163 -89425006 + L2 LINE L2 3106 3310 -3 830 262 31 18 chr13 12448170 12448399 -89424770 - MIR SINE MIR -24 238 7 180 220 0 40 chr13 12448764 12448814 -89424355 + MIR SINE MIR 90 137 -125 2268 87 7 0 chr13 12450020 12450308 -89422861 - AluY SINE Alu -21 290 1 2037 149 7 0 chr13 12452117 12452425 -89420744 - AluSx SINE Alu -2 310 1 250 360 36 56 chr13 12452951 12453061 -89420108 + L2 LINE L2 2636 2747 -567 2255 70 47 7 chr13 12453061 12453360 -89419809 + AluY SINE Alu 1 311 0 250 360 36 56 chr13 12453360 12453499 -89419670 + L2 LINE L2 2747 2880 -434 673 252 109 0 chr13 12453786 12454080 -89419089 - L1MC3 LINE L1 -212 7573 7248 1986 145 0 7 chr13 12454252 12454548 -89418621 + AluSx SINE Alu 3 296 -16 906 210 0 0 chr13 12454576 12454733 -89418436 + AluJb SINE Alu 130 286 -26 192 205 77 0 chr13 12454747 12454786 -89418383 + L2 LINE L2 1753 1794 -1520 319 232 252 73 chr13 12455245 12455396 -89417773 - MER5B DNA MER1_type 0 178 1 582 268 149 9 chr13 12455398 12455734 -89417435 - L1ME LINE L1 -521 5641 5259 2390 66 7 23 chr13 12457622 12457926 -89415243 + AluY SINE Alu 1 299 -12 1702 163 11 0 chr13 12458318 12458600 -89414569 + AluJb SINE Alu 5 289 -23 324 245 158 38 chr13 12459086 12459270 -89413899 - L3 LINE CR1 -29 1548 1343 264 299 0 13 chr13 12459397 12459474 -89413695 - L2 LINE L2 -1 3312 3237 1528 167 11 14 chr13 12459550 12459825 -89413344 - AluJb SINE Alu -34 278 5 2236 79 11 0 chr13 12460564 12460869 -89412300 + AluY SINE Alu 1 308 0 192 362 78 7 chr13 12461369 12461510 -89411659 - L2 LINE L2 -1333 1981 1831 318 304 88 27 chr13 12461945 12462093 -89411076 - MIR SINE MIR -40 222 66 301 119 0 0 chr13 12462276 12462318 -89410851 - 5S rRNA rRNA -79 42 1 417 313 80 13 chr13 12462833 12462983 -89410186 - MIR SINE MIR -1 261 102 774 299 17 14 chr13 12463561 12463855 -89409314 - Charlie7 DNA MER1_type -2051 561 267 312 319 0 0 chr13 12463945 12464036 -89409133 + L1MC4 LINE L1 6613 6703 -1339 312 259 12 12 chr13 12464073 12464158 -89409011 + L1MC4 LINE L1 6614 6698 -1344 455 120 0 120 chr13 12464165 12464340 -89408829 + (TA)n Simple_repeat Simple_repeat 1 154 0 314 113 0 113 chr13 12464372 12464478 -89408691 + (TA)n Simple_repeat Simple_repeat 1 94 0 326 298 66 76 chr13 12465365 12465563 -89407606 - L1M2 LINE L1 -5818 1031 836 4405 164 70 42 chr13 12466511 12467645 -89405524 + L1MB3 LINE L1 4255 5356 -827 1859 137 7 0 chr13 12467645 12467923 -89405246 + AluSq SINE Alu 1 280 -33 270 0 0 0 chr13 12467923 12467953 -89405216 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 4405 164 70 42 chr13 12467953 12468672 -89404497 + L1MB3 LINE L1 5355 6180 -3 279 238 99 45 chr13 12468665 12468888 -89404281 + L1ME4a LINE L1 5804 6038 -83 * 306 248 129 40 chr13 12469046 12469147 -89404022 - MIR SINE MIR -65 197 88 381 317 245 20 chr13 12469420 12470061 -89403108 + L3 LINE CR1 783 1567 -10 2696 122 9 45 chr13 12470145 12470587 -89402582 - MSTB LTR MaLR 0 426 1 304 356 31 36 chr13 12470962 12471156 -89402013 - MIR3 SINE MIR -7 201 9 412 263 18 18 chr13 12471359 12471473 -89401696 + MIR SINE MIR 21 134 -128 2137 139 24 32 chr13 12471730 12472104 -89401065 - MSTB2 LTR MaLR 0 457 87 340 264 52 46 chr13 12472203 12472361 -89400808 + MIR SINE MIR 16 172 -70 246 282 13 0 chr13 12473514 12473592 -89399577 + MIR3 SINE MIR 123 201 -7 450 255 94 20 chr13 12473781 12473930 -89399239 + L1ME3A LINE L1 6001 6160 -10 232 170 226 0 chr13 12474653 12474706 -89398463 + LTR16A LTR ERVL 359 423 -27 191 282 94 24 chr13 12475324 12475409 -89397760 - L2 LINE L2 -9 3263 3173 183 358 59 26 chr13 12475552 12475823 -89397346 - L2 LINE L2 -347 2967 2688 775 129 8 24 chr13 12476093 12476217 -89396952 - FLAM_C SINE Alu -11 132 11 26 82 0 0 chr13 12476316 12476377 -89396792 + AT_rich Low_complexity Low_complexity 1 61 0 598 267 137 22 chr13 12476622 12476954 -89396215 - L1ME3A LINE L1 -266 5912 5525 377 289 17 11 chr13 12476961 12477141 -89396028 - L1P5 LINE L1 -705 5451 5271 2377 92 0 0 chr13 12477142 12477436 -89395733 - AluSg SINE Alu -16 294 1 591 165 31 16 chr13 12477452 12477579 -89395590 - L1MB7 LINE L1 -19 6165 6037 735 143 0 0 chr13 12477586 12477698 -89395471 - L1MB7 LINE L1 -199 5985 5874 1109 124 0 0 chr13 12477705 12477866 -89395303 - AluSg/x SINE Alu -15 295 135 257 135 192 0 chr13 12477866 12477918 -89395251 - L1MB7 LINE L1 -314 5870 5809 322 137 20 0 chr13 12477918 12477969 -89395200 + LTR47A LTR ERVL 1 52 -400 180 111 0 0 chr13 12477969 12477996 -89395173 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 795 118 0 20 chr13 12478096 12478248 -89394921 + (TCCCC)n Simple_repeat Simple_repeat 4 152 0 2057 109 10 7 chr13 12478263 12478565 -89394604 - AluSc SINE Alu -6 303 1 1467 187 134 27 chr13 12478565 12478939 -89394230 + LTR47A LTR ERVL 39 452 0 6822 181 35 18 chr13 12478939 12480942 -89392227 - L1MB7 LINE L1 -371 5813 3790 1067 237 29 12 chr13 12480942 12481288 -89391881 - L1MB7 LINE L1 -2863 3283 2932 25 0 0 0 chr13 12481344 12481369 -89391800 + AT_rich Low_complexity Low_complexity 1 25 0 1005 152 30 0 chr13 12481459 12481623 -89391546 - FRAM SINE Alu -3 173 5 240 318 15 0 chr13 12481720 12481786 -89391383 + L1M4 LINE L1 4029 4095 -2051 307 208 117 13 chr13 12481810 12481887 -89391282 + MLT1K LTR MaLR 171 255 -333 285 75 0 0 chr13 12482054 12482094 -89391075 + (CA)n Simple_repeat Simple_repeat 2 41 0 203 306 56 56 chr13 12482094 12482238 -89390931 + MIR SINE MIR 109 252 -10 3002 153 20 24 chr13 12482502 12483053 -89390116 - L1MB3 LINE L1 0 6183 5635 203 313 38 15 chr13 12483120 12483251 -89389918 - MIR SINE MIR -118 144 11 651 254 88 12 chr13 12483871 12484111 -89389058 - MIR SINE MIR 0 262 5 1462 128 188 0 chr13 12484224 12484458 -89388711 + AluSg SINE Alu 20 297 -13 1877 154 3 0 chr13 12484576 12484869 -89388300 + AluJo SINE Alu 18 311 -1 3958 47 0 0 chr13 12484916 12485389 -89387780 - L1PA5 LINE L1 0 6154 5682 2075 241 120 17 chr13 12485502 12486142 -89387027 + L1ME3 LINE L1 5456 6161 -1 248 344 126 20 chr13 12486198 12486445 -89386724 - L2 LINE L2 -1 3271 2999 3389 197 70 19 chr13 12486445 12486618 -89386551 + L1MA4 LINE L1 5428 5591 -709 2612 53 0 0 chr13 12486618 12486917 -89386252 + AluY SINE Alu 1 299 -12 3389 197 70 19 chr13 12486917 12487572 -89385597 + L1MA4 LINE L1 5591 6298 -2 1174 148 13 52 chr13 12487586 12487749 -89385420 + L1MB3 LINE L1 5959 6112 -71 2283 114 0 0 chr13 12487749 12488046 -89385123 - AluSx SINE Alu -15 297 1 1174 148 13 52 chr13 12488046 12488111 -89385058 + L1MB3 LINE L1 6112 6178 -5 236 225 22 34 chr13 12488400 12488489 -89384680 + L2 LINE L2 3136 3223 -49 221 256 110 0 chr13 12488850 12488932 -89384237 + L2 LINE L2 3166 3256 -16 201 390 42 0 chr13 12489997 12490092 -89383077 + MIR SINE MIR 47 145 -117 2190 116 7 23 chr13 12490163 12490473 -89382696 + AluSx SINE Alu 1 305 -7 388 282 30 15 chr13 12490567 12490698 -89382471 - MIR SINE MIR -70 192 60 303 267 86 0 chr13 12490955 12491060 -89382109 + L2 LINE L2 3200 3313 0 239 188 0 0 chr13 12491253 12491301 -89381868 - L2 LINE L2 -21 3251 3204 249 300 0 0 chr13 12491312 12491382 -89381787 + MER91B DNA MER1_type 2 71 -119 913 125 0 0 chr13 12492253 12492381 -89380788 + FLAM_C SINE Alu 5 132 -1 2443 93 0 0 chr13 12495597 12495897 -89377272 - AluSx SINE Alu -12 300 1 278 359 90 9 chr13 12496028 12496240 -89376929 - MIR SINE MIR -21 241 13 377 315 47 8 chr13 12496403 12496530 -89376639 + L2 LINE L2 3141 3272 0 2281 118 0 6 chr13 12496853 12497168 -89376001 - AluSq SINE Alu 0 313 1 2408 107 0 0 chr13 12498305 12498613 -89374556 + AluSg SINE Alu 1 308 -2 2261 92 7 14 chr13 12500267 12500561 -89372608 + AluSx SINE Alu 1 292 -20 1377 239 107 9 chr13 12500830 12501290 -89371879 + MLT1D LTR MaLR 1 505 0 271 189 153 27 chr13 12501548 12501659 -89371510 + MIR SINE MIR 111 235 -27 305 219 14 14 chr13 12502612 12502685 -89370484 - L2 LINE L2 0 3272 3200 294 197 48 68 chr13 12502923 12503070 -89370099 - L1MC5 LINE L1 -35 7926 7783 965 194 47 93 chr13 12503096 12503482 -89369687 - L1ME2 LINE L1 -23 6141 5768 235 211 42 74 chr13 12503618 12503713 -89369456 + MLT1L LTR MaLR 3 94 -521 324 231 39 48 chr13 12504068 12504172 -89368997 + MLT1L LTR MaLR 168 270 -345 236 288 104 16 chr13 12504267 12504392 -89368777 + MLT1L LTR MaLR 466 601 -14 268 284 0 14 chr13 12505251 12505325 -89367844 + MLT1J LTR MaLR 112 184 -327 786 229 24 0 chr13 12505363 12505529 -89367640 + MER58A DNA MER1_type 1 170 -54 2300 55 0 44 chr13 12505766 12506099 -89367070 + AluY SINE Alu 1 320 0 666 265 76 5 chr13 12506218 12506403 -89366766 - LTR67 LTR ERVL 0 557 360 1152 209 57 72 chr13 12506489 12506522 -89366647 - MLT1A1 LTR MaLR -35 330 298 2157 118 10 0 chr13 12506522 12506828 -89366341 + AluSq SINE Alu 1 309 -4 1152 209 57 72 chr13 12506828 12507129 -89366040 - MLT1A1 LTR MaLR -67 298 1 718 217 92 56 chr13 12507131 12507299 -89365870 - MLT1B LTR MaLR -132 258 77 2360 76 3 0 chr13 12507299 12507609 -89365560 - AluY SINE Alu 0 311 1 718 217 92 56 chr13 12507609 12507689 -89365480 - MLT1B LTR MaLR -313 77 1 508 284 26 42 chr13 12507709 12507857 -89365312 - LTR67 LTR ERVL -369 188 42 1163 179 148 39 chr13 12507857 12508214 -89364955 - MSTD LTR MaLR 0 396 1 508 284 26 42 chr13 12508214 12508255 -89364914 - LTR67 LTR ERVL -515 42 2 26 0 0 0 chr13 12508434 12508460 -89364709 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 12508811 12508841 -89364328 + AT_rich Low_complexity Low_complexity 1 30 0 2203 193 31 13 chr13 12508980 12509432 -89363737 + LTR40b LTR ERVL 1 460 -2 469 300 44 0 chr13 12509445 12509605 -89363564 - MIR SINE MIR -49 213 47 198 0 0 0 chr13 12510149 12510171 -89362998 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 800 80 0 0 chr13 12510173 12510273 -89362896 - AluY SINE Alu -211 100 1 22 0 0 0 chr13 12510275 12510297 -89362872 + AT_rich Low_complexity Low_complexity 1 22 0 986 169 128 0 chr13 12510382 12510554 -89362615 + MER1B DNA MER1_type 29 222 -75 1097 90 7 0 chr13 12510559 12510714 -89362455 - L1MA5A LINE L1 -384 5913 5758 592 156 83 0 chr13 12510714 12510810 -89362359 - U6 snRNA snRNA 0 107 4 2340 107 0 7 chr13 12511058 12511367 -89361802 + AluSx SINE Alu 1 307 -5 2048 133 0 13 chr13 12511544 12511853 -89361316 - AluSg SINE Alu -5 305 1 2573 65 0 3 chr13 12511871 12512179 -89360990 - AluY SINE Alu -4 307 1 229 321 91 29 chr13 12512243 12512486 -89360683 - HAL1 LINE L1 -880 1627 1370 186 133 0 0 chr13 12512494 12512524 -89360645 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 173 35 0 chr13 12512576 12512749 -89360420 - AluJo SINE Alu -49 263 85 1478 221 48 28 chr13 12513056 12513450 -89359719 - L1ME2 LINE L1 -1 6163 5762 351 0 0 0 chr13 12513563 12513602 -89359567 + (CA)n Simple_repeat Simple_repeat 2 40 0 1973 127 0 0 chr13 12513606 12513882 -89359287 - AluSx SINE Alu -36 276 1 2273 69 14 0 chr13 12514211 12514500 -89358669 - AluY SINE Alu -18 293 1 1838 125 59 59 chr13 12515623 12515998 -89357171 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr13 12516516 12516539 -89356630 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2128 128 0 6 chr13 12517253 12517565 -89355604 + AluSx SINE Alu 1 310 -2 2617 137 31 24 chr13 12518189 12518614 -89354555 - MSTC LTR MaLR 0 428 1 427 224 154 6 chr13 12519220 12519376 -89353793 + LTR33A LTR ERVL 9 187 -336 560 246 53 6 chr13 12519408 12519579 -89353590 + LTR33A LTR ERVL 343 521 -2 831 184 184 30 chr13 12519584 12519892 -89353277 + MSTD LTR MaLR 1 396 0 337 238 81 25 chr13 12520310 12520470 -89352699 - L1ME4a LINE L1 -4 6117 5949 2062 129 0 4 chr13 12522190 12522469 -89350700 + AluSx SINE Alu 1 278 -34 297 0 0 0 chr13 12522469 12522502 -89350667 + (CAAT)n Simple_repeat Simple_repeat 4 36 0 2299 140 74 2 chr13 12523000 12523406 -89349763 + L1MB3 LINE L1 5734 6168 -15 222 278 46 37 chr13 12523422 12523530 -89349639 - L2 LINE L2 -615 2699 2591 2068 104 3 47 chr13 12524289 12524587 -89348582 - AluSx SINE Alu -23 289 5 225 266 63 0 chr13 12524802 12524881 -89348288 + MIR SINE MIR 58 141 -67 443 294 60 28 chr13 12525151 12525399 -89347770 + MIR SINE MIR 2 257 -5 1438 172 52 13 chr13 12525962 12526393 -89346776 + LTR45B LTR ERV1 4 603 0 212 228 11 87 chr13 12526460 12526552 -89346617 - MER5A DNA MER1_type -69 120 36 2021 135 3 7 chr13 12526725 12527029 -89346140 + AluJo SINE Alu 9 311 -1 270 0 0 0 chr13 12527438 12527468 -89345701 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 1493 195 11 14 chr13 12527470 12527752 -89345417 - AluJo SINE Alu -31 281 1 2356 104 10 0 chr13 12527827 12528136 -89345033 + AluSx SINE Alu 1 312 0 2212 152 47 2 chr13 12528225 12528626 -89344543 - L1MC1 LINE L1 0 6333 5915 266 313 31 0 chr13 12528711 12528807 -89344362 + MIR3 SINE MIR 87 185 -23 206 306 0 0 chr13 12528875 12528937 -89344232 + L2 LINE L2 3207 3268 -4 2310 140 102 12 chr13 12529564 12529626 -89343543 + LOR1b LTR ERV1 1 56 -405 1715 158 0 11 chr13 12529626 12529899 -89343270 + AluJo SINE Alu 1 270 -42 2310 140 102 12 chr13 12529899 12530257 -89342912 + LOR1b LTR ERV1 56 459 -2 27 29 0 0 chr13 12530946 12530980 -89342189 + AT_rich Low_complexity Low_complexity 1 34 0 295 316 50 18 chr13 12531015 12531297 -89341872 - L1ME LINE L1 -303 5818 5528 227 214 125 0 chr13 12531305 12531361 -89341808 - MLT1J LTR MaLR 0 555 493 520 184 136 0 chr13 12531363 12531466 -89341703 + FLAM_C SINE Alu 2 118 -25 22 0 0 0 chr13 12531466 12531488 -89341681 + AT_rich Low_complexity Low_complexity 1 22 0 193 273 227 9 chr13 12532886 12532996 -89340173 - MIR SINE MIR -109 153 20 852 147 0 0 chr13 12533429 12533558 -89339611 - FRAM SINE Alu -10 166 38 312 310 9 18 chr13 12533920 12534033 -89339136 - MIR SINE MIR -63 145 34 942 235 4 30 chr13 12534269 12534503 -89338666 + MIR SINE MIR 5 232 -30 378 0 0 0 chr13 12534545 12534587 -89338582 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2376 52 3 11 chr13 12534591 12534878 -89338291 - AluY SINE Alu -26 285 1 2631 45 3 3 chr13 12535861 12536171 -89336998 + AluY SINE Alu 1 310 -1 192 152 0 0 chr13 12536757 12536790 -89336379 + (CA)n Simple_repeat Simple_repeat 2 34 0 1973 135 6 35 chr13 12536939 12537257 -89335912 + AluJo SINE Alu 1 309 -3 2309 75 0 3 chr13 12537676 12537987 -89335182 - AluY SINE Alu 0 310 1 2158 110 10 0 chr13 12537991 12538281 -89334888 - AluSx SINE Alu -19 293 1 2569 65 0 0 chr13 12538795 12539104 -89334065 - AluY SINE Alu -2 309 1 691 109 117 16 chr13 12539143 12539271 -89333898 - AluJb SINE Alu -171 141 1 1571 65 0 0 chr13 12539447 12539631 -89333538 - AluY SINE Alu -127 184 1 239 307 88 22 chr13 12540432 12540569 -89332600 - MLT1J LTR MaLR -67 444 299 457 185 91 194 chr13 12540602 12540942 -89332227 - MLT1J LTR MaLR -206 305 1 2234 111 0 10 chr13 12541681 12541987 -89331182 - AluSx SINE Alu -7 305 3 2067 109 0 68 chr13 12543849 12544171 -89328998 - AluSg SINE Alu -10 300 1 401 300 135 31 chr13 12544672 12544932 -89328237 + L3b LINE CR1 1244 1530 -53 2191 124 7 0 chr13 12545393 12545700 -89327469 + AluSx SINE Alu 1 309 -3 2259 82 0 0 chr13 12546343 12546664 -89326505 + AluSx SINE Alu 1 321 0 726 200 113 16 chr13 12547154 12547339 -89325830 + MIR SINE MIR 59 261 -1 209 348 65 11 chr13 12549235 12549327 -89323842 - L2 LINE L2 -47 3225 3129 243 256 44 22 chr13 12549691 12549781 -89323388 - L2 LINE L2 -681 2633 2542 341 318 8 0 chr13 12549904 12550030 -89323139 - L1M4 LINE L1 -3788 2358 2232 2210 81 21 7 chr13 12550069 12550354 -89322815 - AluY SINE Alu -22 289 1 1428 194 77 45 chr13 12551117 12551518 -89321651 + L1ME2 LINE L1 5687 6100 -64 183 200 33 50 chr13 12551953 12552013 -89321156 + MER5A DNA MER1_type 129 187 -2 845 166 13 6 chr13 12552116 12552273 -89320896 - L1PB3 LINE L1 -2 6152 5995 2280 112 0 3 chr13 12552755 12553058 -89320111 + AluSx SINE Alu 4 305 -7 274 269 92 43 chr13 12553246 12553387 -89319782 - L1MC5 LINE L1 -542 7419 7272 427 270 70 69 chr13 12553576 12553617 -89319552 - L1MC5 LINE L1 -754 7207 7168 1980 139 14 0 chr13 12553617 12553912 -89319257 - AluJo SINE Alu -12 300 2 427 270 70 69 chr13 12553912 12554220 -89318949 - L1MC5 LINE L1 -793 7168 6876 230 231 162 46 chr13 12554236 12554452 -89318717 + L1MC5 LINE L1 7576 7816 -145 2506 55 3 10 chr13 12554780 12555089 -89318080 - AluY SINE Alu -4 307 1 27 73 0 0 chr13 12555361 12555416 -89317753 + AT_rich Low_complexity Low_complexity 1 55 0 1393 266 104 27 chr13 12556132 12557102 -89316067 - L2 LINE L2 -38 3275 2230 2738 116 30 25 chr13 12557914 12558345 -89314824 + Tigger2a DNA MER2_type 1 433 -1 2191 99 3 0 chr13 12559603 12559897 -89313272 - AluSx SINE Alu -17 295 1 188 264 96 64 chr13 12560182 12560307 -89312862 + L3 LINE CR1 1056 1184 -393 2026 150 0 10 chr13 12560317 12560623 -89312546 + AluJo SINE Alu 3 305 -7 234 0 0 0 chr13 12560724 12560750 -89312419 + (A)n Simple_repeat Simple_repeat 1 26 0 1521 170 14 22 chr13 12560752 12561028 -89312141 - AluJo SINE Alu -38 274 1 2690 46 0 0 chr13 12562183 12562488 -89310681 + AluY SINE Alu 1 305 -6 29 47 0 0 chr13 12565680 12565723 -89307446 + AT_rich Low_complexity Low_complexity 1 43 0 3044 130 29 6 chr13 12567454 12567937 -89305232 - L1PB2 LINE L1 -7 6144 5651 2367 202 116 3 chr13 12567937 12568547 -89304622 + L1 LINE L1 4725 5403 -743 471 155 282 0 chr13 12569092 12569195 -89303974 - FLAM_C SINE Alu 0 133 2 192 77 0 0 chr13 12569910 12569936 -89303233 + (T)n Simple_repeat Simple_repeat 1 26 0 437 234 91 7 chr13 12570282 12570436 -89302733 + MLT1J LTR MaLR 189 355 -156 673 156 52 22 chr13 12571108 12571243 -89301926 - FLAM_C SINE Alu -3 140 2 358 281 56 25 chr13 12571571 12571731 -89301438 - L1MC4a LINE L1 -1877 5931 5767 1255 141 5 0 chr13 12571755 12571940 -89301229 - AluJb SINE Alu -126 186 1 236 262 33 0 chr13 12572908 12572969 -89300200 + L2 LINE L2 3247 3309 -4 180 275 125 38 chr13 12572939 12573019 -89300150 - L2 LINE L2 -789 2525 2439 * 240 292 108 33 chr13 12573420 12573540 -89299629 + MIR SINE MIR 8 136 -126 201 247 204 81 chr13 12573630 12573816 -89299353 + L2 LINE L2 2885 3093 -220 213 186 34 102 chr13 12573838 12573897 -89299272 + L2 LINE L2 3200 3254 -59 739 224 7 0 chr13 12574982 12575129 -89298040 + MER5B DNA MER1_type 27 174 -4 311 138 219 0 chr13 12575129 12575202 -89297967 + FLAM_A SINE Alu 2 85 -48 183 80 0 0 chr13 12575279 12575304 -89297865 + (A)n Simple_repeat Simple_repeat 1 25 0 189 255 43 0 chr13 12575344 12575391 -89297778 + MER5A DNA MER1_type 140 188 -1 203 343 0 0 chr13 12575636 12575706 -89297463 + MIR SINE MIR 98 167 -95 261 353 133 0 chr13 12576087 12576237 -89296932 + MIR SINE MIR 22 191 -71 2041 131 0 28 chr13 12576458 12576779 -89296390 - AluSx SINE Alu 0 312 1 333 102 0 0 chr13 12576842 12576901 -89296268 + (TG)n Simple_repeat Simple_repeat 2 60 0 417 135 144 48 chr13 12577045 12577149 -89296020 + MER5B DNA MER1_type 1 114 -64 235 369 0 0 chr13 12577256 12577359 -89295810 + L2 LINE L2 2605 2707 -607 578 224 97 81 chr13 12578528 12578887 -89294282 + MLT1H LTR MaLR 55 576 -14 2128 131 37 100 chr13 12578962 12579420 -89293749 - MSTB1 LTR MaLR 0 432 4 298 245 66 19 chr13 12579566 12579672 -89293497 - L1MC5 LINE L1 -44 7917 7807 276 197 30 30 chr13 12580154 12580220 -89292949 + MIR3 SINE MIR 141 206 -2 233 94 0 0 chr13 12580279 12580311 -89292858 + MIR3 SINE MIR 175 206 -2 819 256 68 8 chr13 12580565 12580799 -89292370 + MIR SINE MIR 12 259 -3 1183 269 59 6 chr13 12580918 12581238 -89291931 + MLT1E LTR MaLR 257 593 0 700 201 81 77 chr13 12581404 12581435 -89291734 - MER6B DNA MER2_type -655 210 181 2106 110 0 0 chr13 12581435 12581734 -89291435 + AluSx SINE Alu 1 299 -13 700 201 81 77 chr13 12581734 12581911 -89291258 - MER6B DNA MER2_type -684 181 1 481 193 179 7 chr13 12582348 12582493 -89290676 + MIR SINE MIR 90 259 -3 206 278 37 0 chr13 12584347 12584401 -89288768 + CT-rich Low_complexity Low_complexity 2 57 0 1212 176 60 4 chr13 12584405 12584638 -89288531 - AluJo SINE Alu -54 258 13 1955 100 39 0 chr13 12584728 12584851 -89288318 + AluSg SINE Alu 2 119 -191 920 42 17 0 chr13 12584851 12584971 -89288198 + (GAAA)n Simple_repeat Simple_repeat 3 124 0 1955 100 39 0 chr13 12584971 12585126 -89288043 + AluSg SINE Alu 119 291 -19 2051 115 0 3 chr13 12585417 12585731 -89287438 - AluSx SINE Alu 0 313 1 309 164 49 0 chr13 12586420 12586481 -89286688 - MER90 LTR ERV1 -2 573 510 510 167 31 10 chr13 12586791 12586887 -89286282 + LTR16A1 LTR ERVL 350 447 -10 601 231 37 77 chr13 12586890 12587189 -89285980 - HAL1 LINE L1 -42 2465 2179 2044 127 0 3 chr13 12587202 12587509 -89285660 + AluSc SINE Alu 1 306 -3 1025 266 21 8 chr13 12587528 12587765 -89285404 - MIR SINE MIR -21 241 2 498 251 124 26 chr13 12587771 12588038 -89285131 - HAL1 LINE L1 -324 2183 1891 594 145 0 0 chr13 12588041 12588124 -89285045 - AluS SINE Alu -229 84 2 2525 200 95 97 chr13 12588124 12588389 -89284780 - HAL1 LINE L1 -605 1902 1638 1649 152 19 35 chr13 12588389 12588699 -89284470 + AluJb SINE Alu 6 310 -2 2525 200 95 97 chr13 12588699 12589493 -89283676 - HAL1 LINE L1 -869 1638 845 773 206 141 5 chr13 12589494 12589678 -89283491 + MER34C LTR ERV1 4 212 -373 1033 160 0 0 chr13 12589685 12589854 -89283315 + FRAM SINE Alu 1 169 -7 494 224 120 118 chr13 12589909 12590275 -89282894 + LTR48 LTR ERV1 219 787 0 402 227 275 24 chr13 12590346 12590593 -89282576 - HAL1 LINE L1 -1768 739 431 1529 225 73 39 chr13 12590654 12591147 -89282022 + LTR53 LTR ERVL 3 512 -7 222 220 0 20 chr13 12591156 12591206 -89281963 + (TG)n Simple_repeat Simple_repeat 1 49 0 338 169 127 0 chr13 12591208 12591279 -89281890 - HAL1 LINE L1 -2126 381 302 792 216 70 12 chr13 12591294 12591465 -89281704 + MIR SINE MIR 33 213 -49 610 261 15 20 chr13 12591481 12591676 -89281493 + HAL1 LINE L1 12 205 -2302 342 238 0 0 chr13 12592130 12592193 -89280976 - L2 LINE L2 -39 3274 3212 1943 131 23 7 chr13 12592221 12592527 -89280642 - AluSx SINE Alu -1 311 1 688 123 0 0 chr13 12594022 12594128 -89279041 + AluSg/x SINE Alu 204 309 -1 263 294 76 0 chr13 12594482 12594574 -89278595 - L2 LINE L2 -5 3267 3169 3331 208 64 40 chr13 12596334 12596766 -89276403 + MER63D DNA MER1_type 1 422 -639 2140 106 0 0 chr13 12596766 12597059 -89276110 + AluSq SINE Alu 2 294 -19 3331 208 64 40 chr13 12597059 12597663 -89275506 + MER63D DNA MER1_type 422 1061 0 1021 122 37 0 chr13 12598179 12598343 -89274826 - AluSx SINE Alu -1 311 142 2820 135 10 70 chr13 12598344 12598855 -89274314 - LTR12 LTR ERV1 -234 480 1 1081 103 0 0 chr13 12598855 12599000 -89274169 - AluSx SINE Alu -168 145 1 1791 155 3 7 chr13 12601774 12602077 -89271092 + AluSx SINE Alu 3 304 -8 2294 95 0 0 chr13 12602077 12602383 -89270786 + AluY SINE Alu 1 306 -5 230 303 50 20 chr13 12602460 12602559 -89270610 - L2 LINE L2 -19 3294 3193 821 161 14 14 chr13 12602639 12602798 -89270371 - MER63 DNA MER1_type -53 783 12 1222 170 166 96 chr13 12604343 12604706 -89268463 + Charlie1 DNA MER1_type 1 337 -2424 1969 100 0 0 chr13 12604706 12604967 -89268202 - AluSx SINE Alu -46 266 6 1222 170 166 96 chr13 12604967 12605092 -89268077 + Charlie1 DNA MER1_type 337 2761 0 246 184 0 0 chr13 12605101 12605150 -89268019 + Alu SINE Alu 80 128 -5 2840 201 14 12 chr13 12605421 12605994 -89267175 - L1MD1 LINE L1 -207 6035 5462 1779 151 3 17 chr13 12606000 12606292 -89266877 - AluJo SINE Alu -24 288 1 359 177 0 13 chr13 12606317 12606396 -89266773 - L1MD1 LINE L1 -1103 5043 4966 697 224 50 6 chr13 12606411 12606590 -89266579 - L1MD1 LINE L1 -1236 4910 4724 2065 104 0 0 chr13 12606695 12606975 -89266194 - AluSc SINE Alu -24 285 6 386 171 158 0 chr13 12607034 12607110 -89266059 + MIR SINE MIR 61 148 -60 720 250 137 103 chr13 12607595 12607920 -89265249 + L1MC5 LINE L1 5604 5916 -1892 2248 98 0 0 chr13 12607920 12608215 -89264954 - AluSg SINE Alu -15 295 1 315 49 0 0 chr13 12608215 12608256 -89264913 + L1MB7 LINE L1 6130 6170 -14 720 250 137 103 chr13 12608256 12609150 -89264019 + L1MC5 LINE L1 5915 6830 -978 1383 99 21 52 chr13 12609151 12609384 -89263785 + AluSc SINE Alu 83 308 -1 1792 216 109 88 chr13 12609481 12609670 -89263499 + L1MC5 LINE L1 6980 7163 -798 2062 111 44 0 chr13 12609670 12609967 -89263202 + AluSx SINE Alu 3 312 0 1792 216 109 88 chr13 12609967 12610668 -89262501 + L1MC5 LINE L1 7163 7889 -72 273 167 0 0 chr13 12611140 12611194 -89261975 + CT-rich Low_complexity Low_complexity 1 54 0 1928 141 0 13 chr13 12611930 12612243 -89260926 + AluJo SINE Alu 1 309 -3 1606 89 0 0 chr13 12612828 12613126 -89260043 - AluSc SINE Alu 0 364 67 198 238 24 0 chr13 12613438 12613480 -89259689 + MIR SINE MIR 212 254 -8 271 164 15 15 chr13 12614566 12614633 -89258536 + GA-rich Low_complexity Low_complexity 4 70 0 726 200 109 29 chr13 12614651 12614826 -89258343 - MIR SINE MIR -54 208 20 3646 141 75 83 chr13 12614945 12615737 -89257432 - LTR1 LTR ERV1 0 785 1 196 281 146 0 chr13 12616917 12617006 -89256163 + L2 LINE L2 3169 3270 -2 1639 254 33 60 chr13 12619431 12619677 -89253492 + L1MB3 LINE L1 4559 4810 -1336 1548 178 64 0 chr13 12619677 12619799 -89253370 + AluJb SINE Alu 1 114 -198 239 0 32 0 chr13 12619799 12619830 -89253339 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1548 178 64 0 chr13 12619830 12619988 -89253181 + AluJb SINE Alu 114 299 -13 1639 254 33 60 chr13 12619988 12620395 -89252774 + L1MB3 LINE L1 4810 5191 -955 2200 91 7 7 chr13 12620395 12620691 -89252478 + AluSq SINE Alu 1 296 -17 1639 254 33 60 chr13 12620691 12620801 -89252368 + L1MB3 LINE L1 5191 5302 -844 975 240 48 0 chr13 12620806 12621035 -89252134 + MER69B DNA AcHobo 200 439 -787 * 1023 236 158 27 chr13 12621034 12621168 -89252001 + MER69B DNA AcHobo 556 671 -1855 1635 156 41 4 chr13 12621168 12621473 -89251696 - AluJb SINE Alu 0 317 3 1023 236 158 27 chr13 12621473 12621710 -89251459 + MER69B DNA AcHobo 671 977 -249 2592 172 25 6 chr13 12621716 12622187 -89250982 + L1MB3 LINE L1 5453 5932 -251 973 199 69 6 chr13 12622389 12622616 -89250553 + L1MB3 LINE L1 5906 6142 -41 2041 120 20 0 chr13 12622623 12622924 -89250245 - AluSg SINE Alu -3 307 1 1442 129 9 0 chr13 12623833 12624050 -89249119 + AluSg/x SINE Alu 77 295 -17 596 286 182 14 chr13 12625636 12625856 -89247313 - MIR SINE MIR -3 259 3 501 246 131 50 chr13 12626713 12626912 -89246257 + MIR SINE MIR 48 262 0 776 239 162 3 chr13 12626977 12627316 -89245853 + LTR16A1 LTR ERVL 1 393 -64 260 336 133 7 chr13 12627364 12627635 -89245534 - L2 LINE L2 -52 3220 2916 1133 180 114 4 chr13 12628718 12628973 -89244196 + L1MB4 LINE L1 5898 6180 0 256 214 63 151 chr13 12629449 12629575 -89243594 - MIR SINE MIR -60 148 34 182 294 156 56 chr13 12629901 12630081 -89243088 - MIR SINE MIR -6 256 59 280 232 0 0 chr13 12630088 12630144 -89243025 + L2 LINE L2 3217 3272 0 733 176 24 0 chr13 12630465 12630590 -89242579 - FLAM_C SINE Alu -14 129 2 2223 102 0 0 chr13 12630691 12630986 -89242183 - AluSc SINE Alu -14 295 1 2300 72 0 13 chr13 12632724 12633030 -89240139 + AluSq SINE Alu 1 302 -11 841 182 7 0 chr13 12633300 12633454 -89239715 + FRAM SINE Alu 1 155 -21 1600 106 4 13 chr13 12633462 12633697 -89239472 + AluSq SINE Alu 1 233 -80 413 73 104 31 chr13 12633803 12633899 -89239270 + AluSc SINE Alu 183 285 -24 22 0 0 0 chr13 12633906 12633928 -89239241 + AT_rich Low_complexity Low_complexity 1 22 0 1941 138 7 0 chr13 12633928 12634233 -89238936 + AluSq SINE Alu 1 307 -6 278 305 48 19 chr13 12634709 12634814 -89238355 - MIR SINE MIR -71 137 30 406 252 208 6 chr13 12634834 12634993 -89238176 - MIR SINE MIR -12 250 60 208 266 31 16 chr13 12635044 12635108 -89238061 + L3 LINE CR1 445 509 -1068 2343 90 0 0 chr13 12635539 12635850 -89237319 - AluSq SINE Alu -2 311 1 549 99 0 99 chr13 12637434 12637535 -89235634 + FRAM SINE Alu 56 146 -30 504 0 0 0 chr13 12637536 12637592 -89235577 + (CA)n Simple_repeat Simple_repeat 2 57 0 2034 91 35 0 chr13 12637598 12637883 -89235286 + AluSx SINE Alu 1 295 -17 29 0 0 0 chr13 12637894 12637923 -89235246 + AT_rich Low_complexity Low_complexity 1 29 0 1992 122 20 0 chr13 12638301 12638605 -89234564 - AluSx SINE Alu -2 310 1 294 234 78 0 chr13 12638633 12638710 -89234459 - L2 LINE L2 -1 3312 3230 1914 109 14 14 chr13 12639253 12639567 -89233602 - AluSx SINE Alu 0 314 1 1491 141 21 62 chr13 12639584 12639874 -89233295 - AluJo SINE Alu -24 288 11 235 143 18 18 chr13 12640559 12640615 -89232554 + CT-rich Low_complexity Low_complexity 3 58 0 686 178 34 0 chr13 12640617 12640735 -89232434 - FLAM_C SINE Alu -11 122 1 22 0 0 0 chr13 12640899 12640921 -89232248 + AT_rich Low_complexity Low_complexity 1 22 0 193 288 34 0 chr13 12641034 12641093 -89232076 - MIR SINE MIR 0 262 202 229 362 0 0 chr13 12641136 12641205 -89231964 - MIR SINE MIR -180 82 14 2185 74 0 49 chr13 12641354 12641680 -89231489 + AluY SINE Alu 1 310 -1 430 285 237 4 chr13 12641744 12641972 -89231197 + L3 LINE CR1 1276 1556 -21 232 326 104 14 chr13 12642006 12642150 -89231019 - L2 LINE L2 -818 2496 2340 183 240 184 64 chr13 12642479 12642604 -89230565 - L2 LINE L2 -459 2855 2716 205 281 44 59 chr13 12642719 12642854 -89230315 + L2 LINE L2 2918 3050 -222 4054 138 36 14 chr13 12642977 12643298 -89229871 - L1PB4 LINE L1 -2 6154 5842 522 0 0 0 chr13 12643298 12643356 -89229813 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2066 93 11 0 chr13 12643357 12643637 -89229532 - AluSx SINE Alu -29 283 1 4054 138 36 14 chr13 12643637 12644037 -89229132 - L1PB4 LINE L1 -313 5843 5415 220 204 0 0 chr13 12644111 12644160 -89229009 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 469 231 10 0 chr13 12644862 12644966 -89228203 + MIR SINE MIR 58 162 -100 184 149 11 43 chr13 12645509 12645603 -89227566 + (CA)n Simple_repeat Simple_repeat 2 92 0 313 310 65 13 chr13 12646233 12646388 -89226781 + MIR SINE MIR 35 197 -65 1601 163 0 39 chr13 12646389 12646695 -89226474 + AluJo SINE Alu 2 295 -17 583 108 20 10 chr13 12646699 12646801 -89226368 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 2775 112 65 83 chr13 12647285 12647778 -89225391 + LTR12 LTR ERV1 1 484 -230 215 350 25 0 chr13 12647880 12647960 -89225209 - L2 LINE L2 0 3313 3232 288 53 0 0 chr13 12648999 12649037 -89224132 + (CA)n Simple_repeat Simple_repeat 1 38 0 1713 75 4 0 chr13 12649170 12649397 -89223772 - AluSq SINE Alu -1 312 85 346 183 49 28 chr13 12649448 12649590 -89223579 + (TG)n Simple_repeat Simple_repeat 1 145 0 341 164 38 25 chr13 12649603 12649762 -89223407 + (TG)n Simple_repeat Simple_repeat 1 161 0 204 174 43 0 chr13 12649774 12649820 -89223349 + (TG)n Simple_repeat Simple_repeat 1 48 0 183 97 161 0 chr13 12650731 12650762 -89222407 - L3b LINE CR1 -176 1407 1372 238 323 172 0 chr13 12651349 12651448 -89221721 - L2 LINE L2 -1 3271 3156 1689 157 13 13 chr13 12653557 12653857 -89219312 - AluJo SINE Alu -12 300 1 2213 75 0 32 chr13 12654090 12654398 -89218771 - AluY SINE Alu -13 298 1 306 73 0 0 chr13 12654456 12654497 -89218672 + (TA)n Simple_repeat Simple_repeat 1 41 0 223 240 20 0 chr13 12654607 12654657 -89218512 + (TA)n Simple_repeat Simple_repeat 1 51 0 1852 130 55 0 chr13 12654781 12655073 -89218096 - AluSx SINE Alu -4 308 1 552 111 0 0 chr13 12655073 12655163 -89218006 + (TTC)n Simple_repeat Simple_repeat 1 90 0 827 162 0 29 chr13 12655164 12655300 -89217869 - FLAM_C SINE Alu -1 132 1 788 223 29 11 chr13 12655352 12655527 -89217642 + MER5B DNA MER1_type 1 178 0 414 0 0 0 chr13 12655790 12655836 -89217333 + (CA)n Simple_repeat Simple_repeat 2 47 0 1833 171 36 6 chr13 12656154 12656487 -89216682 + MER2 DNA MER2_type 2 344 0 2078 104 0 13 chr13 12657299 12657785 -89215384 + AluSx SINE Alu 1 312 0 242 191 0 32 chr13 12657788 12657851 -89215318 + GA-rich Low_complexity Low_complexity 4 64 0 469 235 17 42 chr13 12658593 12658712 -89214457 - MIR SINE MIR -119 143 28 200 33 0 33 chr13 12658934 12658964 -89214205 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2183 79 0 0 chr13 12658968 12659247 -89213922 - AluSg SINE Alu -31 279 1 386 274 75 35 chr13 12659286 12659487 -89213682 + L1MC5 LINE L1 7025 7233 -728 296 237 66 0 chr13 12659471 12659547 -89213622 - L1MC4 LINE L1 -165 7877 7797 * 180 0 0 0 chr13 12659701 12659721 -89213448 + (A)n Simple_repeat Simple_repeat 1 20 0 421 269 90 25 chr13 12659827 12660028 -89213141 + L1MC5 LINE L1 7273 7486 -475 * 769 192 44 83 chr13 12660000 12660229 -89212940 + L1ME1 LINE L1 5944 6163 -1 286 260 121 90 chr13 12660236 12660276 -89212893 + L1MC4 LINE L1 7561 7598 -444 1801 137 22 0 chr13 12660276 12660589 -89212580 - AluJb SINE Alu 0 319 1 286 260 121 90 chr13 12660589 12660855 -89212314 + L1MC4 LINE L1 7598 7883 -159 4391 88 14 0 chr13 12660855 12661449 -89211720 - L1PA10 LINE L1 0 6168 5567 286 260 121 90 chr13 12661449 12661505 -89211664 + L1MC4 LINE L1 7883 7936 -106 532 235 0 0 chr13 12661506 12661608 -89211561 + Tigger3b DNA MER2_type 1 102 -1129 3616 180 119 25 chr13 12661627 12662373 -89210796 + Tigger3b DNA MER2_type 260 1103 -1925 5577 134 28 9 chr13 12662373 12663276 -89209893 + MER49 LTR ERV1 3 922 -1 3616 180 119 25 chr13 12663276 12663414 -89209755 + Tigger3b DNA MER2_type 1103 1227 -4 1586 125 31 4 chr13 12663523 12663779 -89209390 - L1MC1 LINE L1 -18 6315 6053 3192 135 19 2 chr13 12663779 12664330 -89208839 - L1MC1 LINE L1 -590 5743 5187 2076 113 14 0 chr13 12664362 12664653 -89208516 + AluSx SINE Alu 1 295 -17 2594 118 6 3 chr13 12665311 12665674 -89207495 + THE1B LTR MaLR 1 364 0 229 316 86 17 chr13 12665792 12665909 -89207260 + L2 LINE L2 3136 3260 -12 259 274 98 0 chr13 12667146 12667248 -89205921 + L2 LINE L2 1958 2069 -1245 1238 215 69 163 chr13 12667248 12667886 -89205283 + MLT1G3 LTR MaLR 1 530 0 1461 292 47 55 chr13 12667890 12667955 -89205214 + L2 LINE L2 2072 2136 -1178 917 161 32 16 chr13 12667955 12668141 -89205028 - MER53 DNA DNA 0 189 1 1461 292 47 55 chr13 12668141 12668728 -89204441 + L2 LINE L2 2136 2720 -594 1718 161 0 23 chr13 12668728 12669032 -89204137 + AluJo SINE Alu 11 307 -5 1461 292 47 55 chr13 12669032 12669127 -89204042 + L2 LINE L2 2720 2814 -500 1853 143 0 7 chr13 12669163 12669449 -89203720 + AluJb SINE Alu 21 304 -8 232 211 84 21 chr13 12669508 12669603 -89203566 - L1MCa LINE L1 -4743 1683 1583 2137 113 3 0 chr13 12669669 12669978 -89203191 - AluSq SINE Alu -3 310 1 308 263 81 64 chr13 12670145 12670381 -89202788 - L1ME3A LINE L1 0 6170 5931 361 255 0 69 chr13 12670402 12670549 -89202620 - L1ME3A LINE L1 -202 5968 5835 1561 181 16 29 chr13 12670549 12670864 -89202305 - AluJo SINE Alu -1 311 1 361 255 0 69 chr13 12670864 12670904 -89202265 - L1ME3A LINE L1 -335 5835 5794 234 186 0 0 chr13 12671034 12671077 -89202092 - L1ME3A LINE L1 -344 5818 5776 814 305 66 81 chr13 12671348 12671820 -89201349 - L3 LINE CR1 -5 1572 1108 249 188 0 42 chr13 12672312 12672360 -89200809 + 7SK RNA RNA 2 47 -146 970 258 87 18 chr13 12672731 12672758 -89200411 + L1ME LINE L1 4900 4924 -1222 2291 72 7 10 chr13 12672758 12673065 -89200104 + AluSx SINE Alu 3 308 -4 970 258 87 18 chr13 12673065 12673495 -89199674 + L1ME LINE L1 4924 5389 -757 1043 181 0 19 chr13 12673497 12673702 -89199467 + AluJo SINE Alu 87 287 -25 1492 163 11 43 chr13 12673734 12674016 -89199153 + AluJo SINE Alu 1 273 -39 626 216 0 0 chr13 12673918 12674029 -89199140 + AluJo/FRAM SINE Alu 176 286 -26 304 179 36 0 chr13 12674026 12674082 -89199087 - L1MC4 LINE L1 -1337 6705 6648 * 318 206 0 0 chr13 12674029 12674102 -89199067 + (TA)n Simple_repeat Simple_repeat 1 73 0 661 249 126 31 chr13 12674102 12674386 -89198783 + L1ME LINE L1 5360 5670 -495 3068 213 20 23 chr13 12674386 12675117 -89198052 + L1MC1 LINE L1 4578 5306 -840 1894 129 0 31 chr13 12675120 12675258 -89197911 + AluSx SINE Alu 1 142 -170 2053 118 3 10 chr13 12675258 12675564 -89197605 + AluSx SINE Alu 1 304 -8 1894 129 0 31 chr13 12675564 12675742 -89197427 + AluSx SINE Alu 142 307 -5 3547 167 27 6 chr13 12675742 12676378 -89196791 + L1MC1 LINE L1 5685 6333 0 802 169 6 25 chr13 12676394 12676554 -89196615 + FRAM SINE Alu 20 176 0 209 0 97 0 chr13 12676558 12676589 -89196580 + A-rich Low_complexity Low_complexity 5 38 0 26 0 0 0 chr13 12676589 12676615 -89196554 + AT_rich Low_complexity Low_complexity 1 26 0 256 196 18 36 chr13 12677668 12677724 -89195445 + L2 LINE L2 3217 3271 -1 241 143 0 0 chr13 12677838 12677873 -89195296 + AluJb SINE Alu 1 35 -265 1603 174 0 7 chr13 12677873 12678155 -89195014 + AluJb SINE Alu 13 292 -20 3170 136 75 84 chr13 12678916 12679697 -89193472 + LTR1 LTR ERV1 11 784 -1 535 258 104 28 chr13 12680147 12680329 -89192840 + MLT1J LTR MaLR 7 202 -309 359 280 120 7 chr13 12680357 12680507 -89192662 + MLT1J LTR MaLR 243 409 -102 2588 16 0 10 chr13 12680510 12680815 -89192354 - AluY SINE Alu -9 302 1 268 191 0 29 chr13 12680829 12680897 -89192272 - L1MC2 LINE L1 -9 6335 6270 2119 93 0 40 chr13 12682466 12682787 -89190382 + AluSx SINE Alu 1 308 -4 1335 139 183 109 chr13 12683549 12683656 -89189513 + MLT2C2 LTR ERVL 1 99 -365 1475 127 120 8 chr13 12683656 12683915 -89189254 + AluSg SINE Alu 1 288 -22 1335 139 183 109 chr13 12683915 12684063 -89189106 + MLT2C2 LTR ERVL 99 235 -229 2035 138 0 0 chr13 12684063 12684367 -89188802 + AluSx SINE Alu 1 304 -8 1335 139 183 109 chr13 12684367 12684542 -89188627 + MLT2C2 LTR ERVL 235 464 0 2285 84 0 13 chr13 12684574 12684885 -89188284 + AluSc SINE Alu 1 307 -2 602 344 9 0 chr13 12685047 12685271 -89187898 - MARNA DNA Mariner -318 268 43 445 269 151 51 chr13 12686008 12686320 -89186849 - L1ME4a LINE L1 0 6121 5779 1445 184 0 67 chr13 12686412 12686541 -89186628 + AluJo SINE Alu 1 137 -175 2248 99 0 0 chr13 12686541 12686834 -89186335 - AluSx SINE Alu -19 293 1 1445 184 0 67 chr13 12686834 12687020 -89186149 + AluJo SINE Alu 137 295 -17 808 176 28 33 chr13 12687154 12687336 -89185833 + AluJb SINE Alu 129 309 -3 1830 120 48 42 chr13 12687721 12687853 -89185316 + MER2 DNA MER2_type 1 131 -214 2103 113 0 0 chr13 12687853 12688145 -89185024 - AluSx SINE Alu -20 292 1 1830 120 48 42 chr13 12688145 12688345 -89184824 + MER2 DNA MER2_type 131 335 -10 855 171 63 0 chr13 12688409 12688567 -89184602 + FRAM SINE Alu 1 168 -8 204 283 240 20 chr13 12689671 12689783 -89183386 - L2 LINE L2 -994 2320 2234 846 219 27 16 chr13 12689783 12689895 -89183274 - MER5A DNA MER1_type 0 189 73 2488 36 3 7 chr13 12689895 12690199 -89182970 - AluY SINE Alu -8 303 1 846 219 27 16 chr13 12690199 12690273 -89182896 - MER5A DNA MER1_type -116 73 1 204 283 240 20 chr13 12690273 12690556 -89182613 - L2 LINE L2 -1080 2234 1838 1805 89 12 8 chr13 12690670 12690917 -89182252 + AluSq SINE Alu 1 248 -65 1731 140 17 7 chr13 12691130 12691422 -89181747 + AluJb SINE Alu 1 295 -17 508 340 13 0 chr13 12691684 12691840 -89181329 - L2 LINE L2 -372 2942 2785 322 182 461 13 chr13 12691840 12691994 -89181175 - L2 LINE L2 -1084 2230 2008 354 342 86 16 chr13 12691996 12692183 -89180986 + L1MC/D LINE L1 5426 5625 -2183 216 306 241 0 chr13 12692790 12692898 -89180271 - L2 LINE L2 -2 3270 3137 271 328 34 25 chr13 12693040 12693159 -89180010 - L2 LINE L2 -219 3053 2934 474 132 44 88 chr13 12693267 12693381 -89179788 + L1MA10 LINE L1 6226 6334 0 347 358 30 6 chr13 12693480 12693654 -89179515 + MIR SINE MIR 16 196 -66 264 253 77 11 chr13 12693968 12694059 -89179110 - MIR SINE MIR -52 210 114 870 193 13 0 chr13 12694402 12694552 -89178617 - FRAM SINE Alu -12 154 3 308 142 37 0 chr13 12694756 12694817 -89178352 + MLT1A1 LTR MaLR 1 63 -365 2756 202 41 41 chr13 12694818 12695396 -89177773 + L1MD1 LINE L1 5514 6094 -148 1746 135 25 0 chr13 12695396 12695677 -89177492 - AluSx SINE Alu -21 291 4 2756 202 41 41 chr13 12695677 12695827 -89177342 + L1MD1 LINE L1 6093 6242 0 425 223 77 15 chr13 12695877 12696007 -89177162 + MLT1A1 LTR MaLR 228 365 0 1954 113 18 0 chr13 12696205 12696488 -89176681 + AluSg SINE Alu 3 290 -20 2153 94 0 3 chr13 12697431 12697730 -89175439 + AluY SINE Alu 1 298 -13 903 79 43 22 chr13 12698482 12698621 -89174548 + AluSp SINE Alu 1 142 -171 1554 133 42 15 chr13 12698626 12698890 -89174279 + AluSp SINE Alu 13 283 -30 1592 168 0 67 chr13 12699455 12699584 -89173585 + AluJo SINE Alu 1 137 -175 2248 99 0 0 chr13 12699584 12699877 -89173292 - AluSx SINE Alu -19 293 1 1592 168 0 67 chr13 12699877 12700063 -89173106 + AluJo SINE Alu 137 295 -17 2037 112 0 3 chr13 12700358 12700678 -89172491 - AluSx SINE Alu 0 312 1 222 290 97 0 chr13 12700762 12700855 -89172314 + MIR SINE MIR 124 225 -37 1019 183 86 81 chr13 12700991 12701157 -89172012 + MER58D DNA MER1_type 1 165 -2255 1681 153 0 81 chr13 12701157 12701490 -89171679 - AluJo SINE Alu -4 308 3 1019 183 86 81 chr13 12701490 12701706 -89171463 + MER58D DNA MER1_type 165 385 -1 1573 187 127 28 chr13 12703207 12703820 -89169349 - LTR48 LTR ERV1 0 787 4 232 237 145 13 chr13 12703926 12704002 -89169167 + L2 LINE L2 3186 3271 -1 661 266 91 37 chr13 12704032 12704268 -89168901 + MIR SINE MIR 3 252 -10 1640 207 28 14 chr13 12704841 12705203 -89167966 - MLT1A2 LTR MaLR -1 373 7 844 261 43 35 chr13 12705282 12705539 -89167630 + MIR SINE MIR 2 260 -2 426 285 32 36 chr13 12705627 12705827 -89167342 + MIR SINE MIR 20 218 -44 2377 157 5 5 chr13 12706385 12706774 -89166395 - MLT1B LTR MaLR -1 389 1 240 232 54 0 chr13 12707453 12707509 -89165660 - L2 LINE L2 0 3313 3255 1450 167 48 44 chr13 12708344 12708638 -89164531 - AluJb SINE Alu -17 295 1 239 236 36 0 chr13 12708978 12709033 -89164136 + L1MC4 LINE L1 7606 7662 -380 2292 158 68 47 chr13 12709088 12709228 -89163941 + L1MB8 LINE L1 5425 5561 -617 2390 84 0 0 chr13 12709228 12709539 -89163630 + AluY SINE Alu 1 311 0 2292 158 68 47 chr13 12709539 12709910 -89163259 + L1MB8 LINE L1 5561 5947 -231 2179 93 7 10 chr13 12709942 12710243 -89162926 - AluSq SINE Alu -13 300 1 2257 123 50 17 chr13 12710245 12710604 -89162565 + LTR45B LTR ERV1 21 391 -98 1882 161 83 22 chr13 12710704 12711065 -89162104 + L1MC1 LINE L1 5943 6325 -8 608 179 6 96 chr13 12711069 12711225 -89161944 + FLAM_A SINE Alu 1 142 0 1262 163 12 33 chr13 12711237 12711343 -89161826 + MLT1D LTR MaLR 271 378 -127 2045 141 0 0 chr13 12711343 12711655 -89161514 - AluSx SINE Alu 0 312 1 1262 163 12 33 chr13 12711655 12711788 -89161381 + MLT1D LTR MaLR 378 505 0 540 225 29 7 chr13 12711796 12711934 -89161235 + L1MD3 LINE L1 7855 7995 0 585 235 53 15 chr13 12711967 12712193 -89160976 - LTR45B LTR ERV1 0 619 180 2029 118 0 20 chr13 12712194 12712498 -89160671 - AluSx SINE Alu -14 298 1 997 102 0 15 chr13 12712498 12712635 -89160534 - AluSq/x SINE Alu -178 135 1 1082 139 92 0 chr13 12712636 12712809 -89160360 - LTR45B LTR ERV1 -298 191 3 376 218 40 50 chr13 12713177 12713278 -89159891 + L1MC4 LINE L1 6604 6703 -1339 350 192 0 91 chr13 12713292 12713391 -89159778 - L1MC4 LINE L1 -1339 6703 6614 350 192 0 91 chr13 12713360 12713459 -89159710 - L1MC4 LINE L1 -1339 6703 6614 350 192 0 91 chr13 12713428 12713527 -89159642 - L1MC4 LINE L1 -1339 6703 6614 350 192 0 91 chr13 12713530 12713663 -89159506 - L1MC4 LINE L1 -1339 6703 6614 328 250 22 43 chr13 12713600 12713692 -89159477 + L1MC4 LINE L1 6614 6703 -1339 * 183 80 0 0 chr13 12713692 12713717 -89159452 + (TG)n Simple_repeat Simple_repeat 2 26 0 1727 167 3 0 chr13 12713787 12714089 -89159080 + AluJo SINE Alu 2 304 0 279 0 0 0 chr13 12714641 12714672 -89158497 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2305 72 0 0 chr13 12714674 12714966 -89158203 - AluY SINE Alu -19 292 1 2074 113 0 3 chr13 12714967 12715267 -89157902 - AluSx SINE Alu -13 299 1 1911 95 91 0 chr13 12715850 12716124 -89157045 + AluSx SINE Alu 1 299 -13 827 263 20 18 chr13 12716131 12716376 -89156793 + MIR SINE MIR 18 262 0 2059 94 3 20 chr13 12716422 12716721 -89156448 - AluSx SINE Alu -18 294 1 312 301 0 0 chr13 12716792 12716865 -89156304 - MIR3 SINE MIR -48 160 88 759 118 0 0 chr13 12717907 12718009 -89155160 - FLAM_C SINE Alu -40 103 2 1595 159 0 95 chr13 12718019 12718346 -89154823 - AluJo SINE Alu -4 298 3 25 0 0 0 chr13 12718349 12718374 -89154795 + AT_rich Low_complexity Low_complexity 1 25 0 849 175 25 0 chr13 12718382 12718542 -89154627 - AluJb SINE Alu -20 292 129 274 258 116 50 chr13 12718838 12719036 -89154133 + L2 LINE L2 2190 2400 -914 944 122 0 34 chr13 12719199 12719347 -89153822 + FRAM SINE Alu 1 142 -34 267 79 0 0 chr13 12719347 12719385 -89153784 + (CA)n Simple_repeat Simple_repeat 2 39 0 1173 141 0 0 chr13 12719548 12719782 -89153387 + AluSg/x SINE Alu 133 366 0 1609 185 0 4 chr13 12720671 12720983 -89152186 - AluJo SINE Alu 0 312 2 291 71 0 0 chr13 12721276 12721318 -89151851 + (TG)n Simple_repeat Simple_repeat 1 42 0 1707 173 7 3 chr13 12721372 12721667 -89151502 + AluJo SINE Alu 1 296 -16 1510 260 60 75 chr13 12721680 12722125 -89151044 + L1MC4 LINE L1 7316 7766 -276 724 163 8 8 chr13 12722125 12722248 -89150921 + FLAM_A SINE Alu 2 124 -9 1510 260 60 75 chr13 12722248 12722310 -89150859 + L1MC4 LINE L1 7766 7827 -215 1892 115 189 19 chr13 12722310 12722631 -89150538 + MSTA LTR MaLR 1 393 -35 1632 105 0 0 chr13 12722631 12722850 -89150319 - AluSx SINE Alu -89 223 5 1892 115 189 19 chr13 12722850 12722893 -89150276 + MSTA LTR MaLR 393 427 -1 1510 260 60 75 chr13 12722893 12723122 -89150047 + L1MC4 LINE L1 7827 8042 0 525 17 0 0 chr13 12723739 12723797 -89149372 + U6 snRNA snRNA 7 64 -43 2554 162 15 34 chr13 12723828 12723991 -89149178 + L1PA16 LINE L1 5669 5834 -332 1846 120 33 40 chr13 12723991 12724290 -89148879 - AluSx SINE Alu -15 297 1 2554 162 15 34 chr13 12724290 12724608 -89148561 + L1PA16 LINE L1 5834 6145 -21 287 305 158 45 chr13 12725090 12725336 -89147833 - L2 LINE L2 0 3272 2999 185 282 14 42 chr13 12725352 12725423 -89147746 + MIR3 SINE MIR 6 74 -134 287 263 75 0 chr13 12725423 12725503 -89147666 + MER96 DNA MER1_type? 1 86 -89 1333 219 103 0 chr13 12726122 12726423 -89146746 + MER7A DNA MER2_type 14 343 -3 2407 59 13 0 chr13 12726454 12726757 -89146412 - AluY SINE Alu -4 307 1 198 316 112 51 chr13 12726792 12727184 -89145985 + L2 LINE L2 2261 2676 -638 2220 116 3 0 chr13 12727416 12727710 -89145459 - AluSx SINE Alu -16 296 2 857 101 0 0 chr13 12728049 12728168 -89145001 + AluSg/x SINE Alu 191 309 0 260 271 188 0 chr13 12728188 12728273 -89144896 - MIR SINE MIR -113 149 49 21 36 0 0 chr13 12728298 12728326 -89144843 + AT_rich Low_complexity Low_complexity 1 28 0 1621 96 36 0 chr13 12728536 12728756 -89144413 - AluSg/x SINE Alu 0 312 85 210 102 34 51 chr13 12728804 12728863 -89144306 + (GTGTG)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr13 12728965 12728987 -89144182 + AT_rich Low_complexity Low_complexity 1 22 0 217 298 0 18 chr13 12729077 12729134 -89144035 + polypyrimidine Low_complexity Low_complexity 3 58 0 456 127 14 0 chr13 12729151 12729222 -89143947 - AluJ/FLAM SINE Alu -238 74 3 391 267 142 33 chr13 12730500 12730740 -89142429 + MLT1L LTR MaLR 127 392 -223 225 301 126 54 chr13 12731116 12731355 -89141814 - L2 LINE L2 -2 3270 3015 2848 10 0 0 chr13 12731419 12731723 -89141446 + AluYa5 SINE Alu 1 304 -7 189 290 100 0 chr13 12731764 12731864 -89141305 - L2 LINE L2 -785 2529 2420 1220 218 14 18 chr13 12731885 12732165 -89141004 + MLT1H LTR MaLR 13 291 -258 295 178 92 0 chr13 12732288 12732363 -89140806 + MLT1H LTR MaLR 418 549 0 2488 76 0 3 chr13 12732918 12733232 -89139937 - AluSq SINE Alu 0 313 1 216 0 0 0 chr13 12734909 12734933 -89138236 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1866 92 64 35 chr13 12734984 12735145 -89138024 - AluSq SINE Alu -23 290 116 195 42 0 0 chr13 12735145 12735169 -89138000 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 1866 92 64 35 chr13 12735169 12735289 -89137880 - AluSq SINE Alu -197 116 1 270 0 0 0 chr13 12736547 12736577 -89136592 + (T)n Simple_repeat Simple_repeat 1 30 0 206 372 18 30 chr13 12737377 12737541 -89135628 + L2 LINE L2 2897 3058 -214 184 323 55 16 chr13 12739969 12740096 -89133073 + L2 LINE L2 3172 3303 -10 3563 70 2 5 chr13 12740159 12740604 -89132565 - MLT2A1 LTR ERVL 0 444 1 2098 147 0 13 chr13 12740683 12740995 -89132174 - AluJb SINE Alu -4 308 1 190 211 88 0 chr13 12741717 12741774 -89131395 + MIR SINE MIR 122 183 -79 661 198 0 0 chr13 12741839 12741960 -89131209 + FLAM_A SINE Alu 20 140 -2 4013 129 80 49 chr13 12742246 12743007 -89130162 + LTR1 LTR ERV1 1 785 0 289 182 0 45 chr13 12743045 12743111 -89130058 - MIR SINE MIR -61 147 85 219 218 13 26 chr13 12744239 12744317 -89128852 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 1601 200 54 15 chr13 12744339 12744718 -89128451 - MLT2D LTR ERVL -35 485 1 535 283 17 11 chr13 12744728 12744908 -89128261 - MIR SINE MIR -54 208 28 468 193 43 43 chr13 12745020 12745160 -89128009 - LTR67 LTR ERVL -1 556 417 1619 204 92 54 chr13 12745470 12745915 -89127254 + MLT1C LTR MaLR 6 467 0 2338 70 3 3 chr13 12746314 12746600 -89126569 - AluSx SINE Alu -23 289 4 288 262 0 0 chr13 12747319 12747380 -89125789 + MIR SINE MIR 88 148 -60 2187 94 3 20 chr13 12747463 12747762 -89125407 + AluSx SINE Alu 1 294 -18 753 254 14 14 chr13 12747808 12748017 -89125152 - MIR SINE MIR 0 262 54 2004 98 91 0 chr13 12748060 12748334 -89124835 - AluSx SINE Alu -13 299 1 2202 113 0 3 chr13 12748917 12749217 -89123952 + AluSx SINE Alu 1 299 -13 2359 84 0 0 chr13 12749218 12749516 -89123653 + AluY SINE Alu 1 298 -13 963 79 43 22 chr13 12750268 12750407 -89122762 + AluSp SINE Alu 1 142 -171 1924 109 39 14 chr13 12750412 12750696 -89122473 + AluSp SINE Alu 13 303 -10 209 278 290 11 chr13 12751861 12752037 -89121132 + MIR SINE MIR 22 246 -16 21 0 0 0 chr13 12753480 12753501 -89119668 + GC_rich Low_complexity Low_complexity 1 21 0 256 281 125 8 chr13 12754090 12754218 -89118951 + L1ME LINE L1 5686 5828 -334 2178 132 64 13 chr13 12754499 12754892 -89118277 - L1MC3 LINE L1 -2 7783 7371 219 300 113 52 chr13 12755151 12755297 -89117872 + L2 LINE L2 944 1110 -2204 2250 96 0 10 chr13 12755297 12755598 -89117571 - AluSq SINE Alu -15 298 1 219 300 113 52 chr13 12755598 12755681 -89117488 + L2 LINE L2 1110 1187 -2127 601 252 155 0 chr13 12755775 12755981 -89117188 + MER102b DNA MER1_type 103 340 -1 202 296 45 34 chr13 12755985 12756073 -89117096 + L2 LINE L2 1217 1305 -2009 1309 146 108 54 chr13 12756073 12756530 -89116639 - LTR64 LTR ERVK -13 545 1 2103 110 25 0 chr13 12756617 12756899 -89116270 - AluSx SINE Alu -23 289 1 534 322 167 11 chr13 12757173 12757639 -89115530 + L2 LINE L2 1816 2354 -960 367 137 0 0 chr13 12757664 12757715 -89115454 - MER66B LTR ERV1 -141 345 295 412 148 123 0 chr13 12757798 12757879 -89115290 - LTR64 LTR ERVK -13 545 455 1747 171 7 16 chr13 12757938 12758242 -89114927 - AluJo SINE Alu -11 301 1 1852 174 7 0 chr13 12758262 12758566 -89114603 + AluJb SINE Alu 2 307 -5 321 68 0 0 chr13 12758905 12758949 -89114220 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 270 16 0 chr13 12758951 12759014 -89114155 - HAL1 LINE L1 -2441 66 3 694 190 0 0 chr13 12759381 12759497 -89113672 - FLAM_C SINE Alu -17 116 1 976 220 20 12 chr13 12759499 12759749 -89113420 - L1ME3 LINE L1 -187 5975 5724 819 206 0 0 chr13 12759750 12759891 -89113278 - FRAM SINE Alu -36 140 1 293 244 0 73 chr13 12759891 12759922 -89113247 - L1ME3 LINE L1 -524 5640 5608 2097 132 11 36 chr13 12759922 12760286 -89112883 - THE1A LTR MaLR 0 355 1 293 244 0 73 chr13 12760286 12760336 -89112833 - L1ME3 LINE L1 -556 5608 5565 244 294 79 40 chr13 12760581 12760707 -89112462 - L2 LINE L2 -4 3309 3179 2116 129 20 0 chr13 12761532 12761834 -89111335 - AluSx SINE Alu -4 308 1 26 0 0 0 chr13 12761891 12761917 -89111252 + AT_rich Low_complexity Low_complexity 1 26 0 274 294 94 39 chr13 12762591 12762771 -89110398 + MER117 DNA MER1_type 8 197 0 410 212 44 53 chr13 12763190 12763303 -89109866 + Charlie1 DNA MER1_type 9 120 -2641 736 203 0 0 chr13 12763320 12763453 -89109716 - FLAM_A SINE Alu 0 133 1 3355 172 40 149 chr13 12763456 12764093 -89109076 + Charlie1 DNA MER1_type 1638 2072 -689 2457 82 3 0 chr13 12764093 12764397 -89108772 + AluSp SINE Alu 1 305 -8 3355 172 40 149 chr13 12764397 12765018 -89108151 + Charlie1 DNA MER1_type 2072 2759 -2 1241 169 125 47 chr13 12766029 12766266 -89106903 + MER2 DNA MER2_type 1 271 -73 2221 115 0 16 chr13 12766266 12766578 -89106591 - AluSq SINE Alu -6 307 1 1241 169 125 47 chr13 12766578 12766659 -89106510 + MER2 DNA MER2_type 271 344 0 275 216 165 41 chr13 12766849 12766946 -89106223 + L2 LINE L2 3204 3312 -1 790 268 149 29 chr13 12767157 12767733 -89105436 - L2 LINE L2 0 3313 2671 4517 229 86 35 chr13 12767748 12767818 -89105351 + L1MB8 LINE L1 2504 2569 -3577 2182 124 0 0 chr13 12767818 12768116 -89105053 - AluSx SINE Alu -7 305 8 4517 229 86 35 chr13 12768116 12768495 -89104674 + L1MB8 LINE L1 2569 2927 -3219 1465 208 52 0 chr13 12768495 12768783 -89104386 + AluJb SINE Alu 1 303 -9 4517 229 86 35 chr13 12768783 12769228 -89103941 + L1MB8 LINE L1 2927 3348 -2798 1708 164 31 11 chr13 12769228 12769514 -89103655 + AluJb SINE Alu 8 299 -13 4517 229 86 35 chr13 12769514 12770229 -89102940 + L1MB8 LINE L1 3348 4198 -1948 3019 157 113 36 chr13 12770230 12770866 -89102303 + LTR8 LTR ERV1 2 686 -5 3906 193 73 28 chr13 12770881 12770932 -89102237 + L1MB8 LINE L1 4201 4248 -1936 2362 89 0 32 chr13 12770932 12771248 -89101921 + AluY SINE Alu 1 306 -5 3906 193 73 28 chr13 12771248 12771369 -89101800 + L1MB8 LINE L1 4248 4362 -1822 2045 144 0 16 chr13 12771369 12771681 -89101488 + AluSg SINE Alu 1 307 -3 3906 193 73 28 chr13 12771681 12771942 -89101227 + L1MB8 LINE L1 4362 4610 -1574 1769 169 17 3 chr13 12771942 12772237 -89100932 - AluJb SINE Alu -13 299 1 3906 193 73 28 chr13 12772237 12773468 -89099701 + L1MB8 LINE L1 4610 5925 -259 953 202 85 9 chr13 12773599 12773822 -89099347 + L1MB8 LINE L1 5938 6177 -1 21 0 0 0 chr13 12774550 12774571 -89098598 + AT_rich Low_complexity Low_complexity 1 21 0 710 213 7 0 chr13 12774577 12774727 -89098442 - L1MD2 LINE L1 -14 6345 6195 1223 201 98 56 chr13 12774729 12775138 -89098031 - L1MD2 LINE L1 -216 6143 5718 2147 106 28 0 chr13 12775430 12775713 -89097456 + AluSx SINE Alu 7 297 -15 2368 101 0 0 chr13 12775714 12776011 -89097158 + AluSq SINE Alu 1 297 -16 1473 111 19 0 chr13 12776642 12776850 -89096319 - AluSg/x SINE Alu -18 294 83 235 245 0 19 chr13 12777247 12777300 -89095869 + FRAM/FAM SINE Alu 1 44 -122 2211 180 72 40 chr13 12777325 12777797 -89095372 + LTR22 LTR ERVK 1 487 -22 290 183 0 0 chr13 12777803 12777863 -89095306 + Alu SINE Alu 242 301 -1 1434 148 113 14 chr13 12777864 12778148 -89095021 - L1MB5 LINE L1 -40 6134 5823 267 356 0 0 chr13 12778220 12778338 -89094831 - MARNA DNA Mariner -43 543 426 1991 147 31 8 chr13 12778387 12778747 -89094422 - L1MB3 LINE L1 0 6183 5816 * 5736 123 13 13 chr13 12778741 12779427 -89093742 - L1PA15 LINE L1 -2 6163 5478 2076 151 3 0 chr13 12779427 12779738 -89093431 - AluSx SINE Alu 0 312 1 5736 123 13 13 chr13 12779738 12780069 -89093100 - L1PA15 LINE L1 -687 5478 5148 348 43 0 0 chr13 12780069 12780115 -89093054 + (TTAG)n Simple_repeat Simple_repeat 3 48 0 2136 99 10 31 chr13 12780117 12780411 -89092758 - AluSq SINE Alu -25 288 1 5736 123 13 13 chr13 12780411 12781170 -89091999 - L1PA15 LINE L1 -1017 5148 4395 494 73 0 0 chr13 12781179 12781247 -89091922 - AluJb SINE Alu -7 305 238 5341 94 24 65 chr13 12781247 12782108 -89091061 - LTR12 LTR ERV1 0 826 1 4945 112 6 10 chr13 12782187 12783121 -89090048 - Harlequin LTR ERV1 0 8399 504 2396 174 130 70 chr13 12783115 12783946 -89089223 - Harlequin LTR ERV1 -5176 1720 840 * 37925 82 7 9 chr13 12783947 12787640 -89085529 - Harlequin LTR ERV1 -3455 4944 1265 333 68 0 0 chr13 12787640 12787684 -89085485 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 37925 82 7 9 chr13 12787684 12788946 -89084223 - Harlequin LTR ERV1 -7134 1265 1 5095 95 84 28 chr13 12788946 12789728 -89083441 - LTR12 LTR ERV1 0 826 1 840 196 115 48 chr13 12789806 12790076 -89083093 - pTR5 LTR ERV1 -1410 1028 741 1509 138 36 5 chr13 12790118 12790342 -89082827 - AluJb SINE Alu -81 231 1 1700 159 22 149 chr13 12790353 12790759 -89082410 - L1MB3 LINE L1 -491 5683 5227 1699 167 7 14 chr13 12790759 12791040 -89082129 + AluJb SINE Alu 13 291 -21 2011 142 27 0 chr13 12791047 12791343 -89081826 + AluY SINE Alu 1 304 -7 1700 159 22 149 chr13 12791343 12791729 -89081440 - L1MB3 LINE L1 -953 5221 5154 2145 128 3 0 chr13 12791729 12792027 -89081142 - AluSx SINE Alu -11 301 3 1700 159 22 149 chr13 12792027 12792122 -89081047 - L1MB3 LINE L1 -1020 5154 5049 675 181 51 0 chr13 12792122 12792260 -89080909 - FAM SINE Alu -23 162 18 2597 203 45 32 chr13 12792278 12792789 -89080380 - L1M4c LINE L1 -4167 2479 1859 1595 183 35 7 chr13 12792789 12793074 -89080095 + AluJb SINE Alu 1 293 -19 2597 203 45 32 chr13 12793074 12793413 -89079756 - L1M4c LINE L1 -4787 1859 1526 1246 132 0 0 chr13 12793417 12793591 -89079578 - AluSg/x SINE Alu -5 305 132 1882 139 44 17 chr13 12793591 12793912 -89079257 - AluSg SINE Alu 0 310 1 1332 282 42 46 chr13 12793915 12793931 -89079238 - L1M4c LINE L1 -5927 615 600 2621 131 11 47 chr13 12793931 12794375 -89078794 - MSTC LTR MaLR 0 428 1 1332 282 42 46 chr13 12794375 12794971 -89078198 - L1M4c LINE L1 -5942 600 5 238 342 45 0 chr13 12795070 12795181 -89077988 + L1ME LINE L1 5597 5712 -458 2082 104 54 0 chr13 12795334 12795612 -89077557 - AluSx SINE Alu -19 293 1 348 272 87 0 chr13 12796024 12796149 -89077020 + MER5B DNA MER1_type 4 129 -49 2132 120 0 10 chr13 12796150 12796450 -89076719 - AluSq SINE Alu -16 297 1 626 200 51 40 chr13 12796450 12796625 -89076544 - L1MC5 LINE L1 -439 7522 7346 281 269 0 0 chr13 12797307 12797374 -89075795 - LTR33 LTR ERVL 0 521 455 1081 121 0 0 chr13 12797402 12797551 -89075618 + FRAM SINE Alu 19 167 -9 763 261 159 13 chr13 12797556 12797909 -89075260 - LTR33 LTR ERVL -69 452 3 2351 288 52 36 chr13 12798434 12798835 -89074334 - ERVL LTR ERVL -724 5040 4647 189 0 0 0 chr13 12798835 12798856 -89074313 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2206 104 0 0 chr13 12798856 12799134 -89074035 - AluSg SINE Alu -32 278 1 2351 288 52 36 chr13 12799134 12799686 -89073483 - ERVL LTR ERVL -1116 4648 4070 1410 186 107 51 chr13 12799686 12800041 -89073128 + MLT1B LTR MaLR 1 375 -15 877 318 74 27 chr13 12800086 12800599 -89072570 - ERVL LTR ERVL -1654 4000 3464 1255 180 72 73 chr13 12800660 12801088 -89072081 + MER39 LTR ERV1 196 684 -23 1674 255 91 68 chr13 12801286 12801580 -89071589 - ERVL LTR ERVL -2511 3253 2967 1915 143 7 16 chr13 12801580 12801887 -89071282 - AluJo SINE Alu -8 304 1 1674 255 91 68 chr13 12801887 12802295 -89070874 - ERVL LTR ERVL -2797 2967 2535 300 23 116 0 chr13 12802372 12802415 -89070754 - MLT2B3 LTR ERVL 0 520 473 2382 188 66 19 chr13 12802457 12802900 -89070269 - MLT2B3 LTR ERVL -34 520 51 2162 112 7 7 chr13 12802900 12803205 -89069964 - AluSx SINE Alu -7 305 1 2382 188 66 19 chr13 12803205 12803246 -89069923 - MLT2B3 LTR ERVL -503 51 13 1351 174 125 21 chr13 12803255 12803536 -89069633 - AluSg SINE Alu 0 310 1 1147 293 107 30 chr13 12803702 12804497 -89068672 + HAL1 LINE L1 1013 1868 -639 1908 129 43 17 chr13 12804498 12804800 -89068369 + AluSx SINE Alu 1 310 -2 1820 145 0 17 chr13 12804851 12805140 -89068029 - AluJo SINE Alu -14 298 15 1588 141 0 27 chr13 12805146 12805402 -89067767 + AluJb SINE Alu 64 312 0 370 303 46 17 chr13 12806567 12806742 -89066427 - L3b LINE CR1 -301 1282 1103 1093 245 117 63 chr13 12806986 12807160 -89066009 + MLT1J LTR MaLR 24 187 -324 1610 192 0 10 chr13 12807160 12807457 -89065712 - AluJo SINE Alu -7 305 12 1093 245 117 63 chr13 12807457 12807710 -89065459 + MLT1J LTR MaLR 187 474 -37 652 248 72 36 chr13 12807911 12808133 -89065036 - MIR SINE MIR -32 230 1 1738 128 15 107 chr13 12808420 12808756 -89064413 - AluJb SINE Alu -7 305 1 1623 182 3 36 chr13 12809146 12809260 -89063909 + AluJb SINE Alu 1 117 -195 2335 92 60 17 chr13 12809260 12809609 -89063560 - THE1B LTR MaLR 0 364 1 1623 182 3 36 chr13 12809609 12809802 -89063367 + AluJb SINE Alu 117 298 -14 288 0 0 0 chr13 12809802 12809834 -89063335 + (TA)n Simple_repeat Simple_repeat 2 33 0 916 143 0 0 chr13 12809890 12810023 -89063146 + AluSq/x SINE Alu 1 133 -180 2316 101 3 0 chr13 12810737 12811043 -89062126 + AluSc SINE Alu 1 307 -2 586 260 19 0 chr13 12811200 12811354 -89061815 - L1M4 LINE L1 -2022 4124 3968 661 308 53 3 chr13 12811382 12811700 -89061469 + L1ME4a LINE L1 5484 5817 -304 2187 122 3 0 chr13 12811712 12812007 -89061162 + AluSx SINE Alu 1 296 -16 2309 81 0 3 chr13 12812007 12812321 -89060848 + AluY SINE Alu 1 313 0 480 179 142 8 chr13 12812719 12812853 -89060316 + L1ME4a LINE L1 5955 6106 -15 819 176 7 0 chr13 12813254 12813396 -89059773 - FLAM_C SINE Alu 0 143 1 366 306 9 0 chr13 12813577 12813688 -89059481 + L2 LINE L2 3158 3269 -3 2295 114 0 10 chr13 12813895 12814203 -89058966 + AluSx SINE Alu 1 305 -7 547 246 112 17 chr13 12814341 12814573 -89058596 + L1MC5 LINE L1 7605 7858 -103 428 191 27 82 chr13 12814564 12814664 -89058505 + L1ME2 LINE L1 6010 6114 -50 * 1932 172 3 0 chr13 12814664 12814967 -89058202 - AluSx SINE Alu -8 304 1 2169 132 3 6 chr13 12814967 12815278 -89057891 - AluSx SINE Alu -2 310 1 428 191 27 82 chr13 12815278 12815323 -89057846 + L1ME2 LINE L1 6112 6148 -16 209 224 0 20 chr13 12815409 12815458 -89057711 + A-rich Low_complexity Low_complexity 3 50 0 2082 114 0 72 chr13 12816001 12816179 -89056990 - AluSx SINE Alu -3 309 165 1761 101 136 19 chr13 12816179 12816437 -89056732 - AluSg1 SINE Alu -21 288 1 2082 114 0 72 chr13 12816437 12816591 -89056578 - AluSx SINE Alu -147 165 1 21 0 0 0 chr13 12816600 12816621 -89056548 + AT_rich Low_complexity Low_complexity 1 21 0 1099 175 15 5 chr13 12816770 12816970 -89056199 - AluJo SINE Alu -110 202 1 299 224 165 12 chr13 12817155 12817240 -89055929 + L2 LINE L2 3182 3279 -34 2319 131 0 0 chr13 12817245 12817557 -89055612 - AluSx SINE Alu 0 312 1 2025 144 7 0 chr13 12817575 12817873 -89055296 - AluSx SINE Alu -12 300 1 192 294 29 0 chr13 12818073 12818141 -89055028 - L2 LINE L2 -226 3046 2977 499 197 47 39 chr13 12818158 12818285 -89054884 + MER94 DNA DNA 6 133 -1 3012 171 38 77 chr13 12819329 12819698 -89053471 - L1MB4 LINE L1 0 6180 5798 586 197 128 0 chr13 12819698 12819815 -89053354 - FLAM_A SINE Alu -1 132 1 3012 171 38 77 chr13 12819815 12820185 -89052984 - L1MB4 LINE L1 -382 5798 5472 189 0 0 0 chr13 12820185 12820206 -89052963 + (TA)n Simple_repeat Simple_repeat 1 21 0 3012 171 38 77 chr13 12820206 12820260 -89052909 - L1MB4 LINE L1 -708 5472 5417 308 306 48 8 chr13 12820804 12820928 -89052241 - L1ME4a LINE L1 -1 6120 5992 1793 143 38 3 chr13 12821062 12821355 -89051814 - AluJb SINE Alu -9 303 1 277 141 110 17 chr13 12821364 12821448 -89051721 - L1ME4a LINE L1 -513 5820 5730 1448 157 4 4 chr13 12821573 12821809 -89051360 + MER46A DNA MER2_type 1 236 0 2268 154 19 58 chr13 12821963 12822025 -89051144 - L1MB3 LINE L1 -24 6159 6096 2366 94 3 0 chr13 12822025 12822323 -89050846 - AluSp SINE Alu -14 299 1 2268 154 19 58 chr13 12822323 12822726 -89050443 - L1MB3 LINE L1 -87 6096 5712 276 292 80 0 chr13 12822857 12822970 -89050199 - MIR SINE MIR -57 205 84 2384 103 0 3 chr13 12822974 12823286 -89049883 + AluSx SINE Alu 1 311 -1 661 198 0 0 chr13 12823928 12824049 -89049120 - FLAM_A SINE Alu -2 140 20 190 211 88 0 chr13 12824114 12824171 -89048998 - MIR SINE MIR -79 183 122 2054 150 0 13 chr13 12824893 12825200 -89047969 + AluJb SINE Alu 1 303 -9 2213 97 7 3 chr13 12826267 12826556 -89046613 - AluSg SINE Alu -20 290 1 771 58 10 19 chr13 12827470 12827573 -89045596 + AluSg/x SINE Alu 67 168 -144 264 167 0 0 chr13 12827588 12827636 -89045533 + A-rich Low_complexity Low_complexity 1 48 0 311 318 164 25 chr13 12827787 12827988 -89045181 + MIR SINE MIR 21 249 -13 2477 58 0 13 chr13 12828036 12828347 -89044822 - AluY SINE Alu -4 307 1 234 204 0 0 chr13 12828448 12828492 -89044677 - MIR SINE MIR -109 153 110 597 284 97 23 chr13 12828604 12828780 -89044389 + MIR SINE MIR 3 191 -71 1896 118 21 21 chr13 12829510 12829523 -89043646 - AluSx SINE Alu -17 295 283 180 0 0 0 chr13 12829523 12829543 -89043626 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 1896 118 21 21 chr13 12829543 12829818 -89043351 - AluSx SINE Alu -28 284 7 1549 170 3 47 chr13 12829822 12830122 -89043047 - AluJb SINE Alu -25 287 1 2039 142 10 0 chr13 12830132 12830428 -89042741 - AluSx SINE Alu -13 299 1 332 287 44 94 chr13 12832504 12832685 -89040484 - L2 LINE L2 -1 3312 3141 224 164 200 0 chr13 12832680 12832735 -89040434 - MIR SINE MIR -127 135 70 * 36 40 0 0 chr13 12834704 12834754 -89038415 + AT_rich Low_complexity Low_complexity 1 50 0 1822 83 0 0 chr13 12835121 12835349 -89037820 - AluSp SINE Alu -3 310 83 364 327 90 13 chr13 12836204 12836360 -89036809 + MIR3 SINE MIR 2 169 -39 29 0 0 0 chr13 12836461 12836490 -89036679 + AT_rich Low_complexity Low_complexity 1 29 0 334 160 267 0 chr13 12836782 12836857 -89036312 + MIR SINE MIR 83 177 -85 249 81 0 0 chr13 12837264 12837301 -89035868 - MADE1 DNA Mariner -43 37 1 643 171 73 0 chr13 12838626 12838749 -89034420 - FLAM_C SINE Alu 0 133 2 331 280 153 11 chr13 12839558 12839747 -89033422 + L1MEc LINE L1 2154 2369 -4027 1279 182 60 40 chr13 12840503 12840805 -89032364 - AluJb SINE Alu -4 308 1 290 219 0 0 chr13 12841197 12841261 -89031908 - L1P LINE L1 -4468 1678 1615 331 280 153 11 chr13 12841640 12841829 -89031340 + L1MEc LINE L1 2154 2369 -4027 1686 150 42 36 chr13 12842585 12842891 -89030278 - AluJb SINE Alu -4 308 1 1096 141 44 0 chr13 12843502 12843708 -89029461 + L1PA11 LINE L1 5960 6174 0 302 78 118 0 chr13 12844364 12844415 -89028754 - L1MA9 LINE L1 0 6312 6256 319 109 0 0 chr13 12845747 12845793 -89027376 - MLT1C LTR MaLR -2 465 420 1752 149 0 0 chr13 12845795 12846077 -89027092 + MER7A DNA MER2_type 67 346 0 1521 149 113 69 chr13 12846078 12846467 -89026702 - MLT1C LTR MaLR -56 411 6 2277 103 0 13 chr13 12847642 12847953 -89025216 - AluSx SINE Alu -1 311 5 491 233 179 10 chr13 12847965 12848266 -89024903 - L1MC5 LINE L1 -311 7650 7299 293 161 18 0 chr13 12848432 12848488 -89024681 - L1MC5 LINE L1 -733 7228 7172 1239 237 50 11 chr13 12848706 12849065 -89024104 - L1M4 LINE L1 -1815 4567 4195 1584 209 10 3 chr13 12849080 12849372 -89023797 - AluSx SINE Alu -18 294 1 211 68 45 0 chr13 12849573 12849599 -89023570 + (TA)n Simple_repeat Simple_repeat 1 31 -15 2155 82 35 0 chr13 12849599 12849881 -89023288 - AluSg SINE Alu -18 292 1 211 68 45 0 chr13 12849881 12849898 -89023271 + (TA)n Simple_repeat Simple_repeat 31 46 0 558 230 50 98 chr13 12850002 12850135 -89023034 - L1M4 LINE L1 -4227 2156 2018 1862 155 3 3 chr13 12850135 12850425 -89022744 - AluJo SINE Alu -18 294 5 558 230 50 98 chr13 12850425 12850707 -89022462 - L1M4 LINE L1 -4365 2018 1397 1288 234 90 40 chr13 12851098 12851542 -89021627 - MLT1C LTR MaLR 0 467 2 2073 122 4 0 chr13 12851865 12852143 -89021026 - AluSq SINE Alu -22 291 13 1520 176 0 58 chr13 12853202 12853497 -89019672 - AluJb SINE Alu -34 278 1 21 36 0 0 chr13 12853642 12853670 -89019499 + AT_rich Low_complexity Low_complexity 1 28 0 1624 167 17 27 chr13 12853754 12854048 -89019121 - AluJo SINE Alu -10 302 12 1788 156 17 7 chr13 12854063 12854351 -89018818 - AluJb SINE Alu -19 293 3 489 266 85 19 chr13 12854400 12854948 -89018221 - L1MC5 LINE L1 -537 7495 7004 298 195 17 93 chr13 12855024 12855142 -89018027 - L1MC4 LINE L1 -989 7053 6945 2395 87 0 0 chr13 12855162 12855462 -89017707 - AluSc SINE Alu -9 300 1 377 182 15 83 chr13 12855487 12855619 -89017550 - L1MC4 LINE L1 -989 7053 6931 * 717 232 87 5 chr13 12855611 12856076 -89017093 - L1MC4 LINE L1 -6 8036 7390 189 74 0 0 chr13 12856122 12856149 -89017020 + (TG)n Simple_repeat Simple_repeat 2 28 0 1140 127 0 40 chr13 12856149 12856322 -89016847 - AluSg/x SINE Alu -26 286 121 293 143 20 0 chr13 12856324 12856373 -89016796 - Alu SINE Alu -258 50 1 787 159 15 0 chr13 12856381 12856513 -89016656 - Tigger4(Zombi) DNA MER2_type -2596 135 2 1338 221 118 17 chr13 12856533 12856940 -89016229 - L1MC4 LINE L1 -893 7149 6702 2266 113 7 0 chr13 12856960 12857262 -89015907 + AluSx SINE Alu 1 304 -8 303 282 137 0 chr13 12857634 12857751 -89015418 + MIR SINE MIR 118 250 -12 332 246 32 40 chr13 12857925 12858051 -89015118 - L1ME3A LINE L1 -50 6120 5996 262 252 16 118 chr13 12858365 12858492 -89014677 + L2 LINE L2 3155 3268 -4 2090 119 0 0 chr13 12858647 12858942 -89014227 - AluSx SINE Alu -17 295 1 414 252 101 0 chr13 12859288 12859407 -89013762 + MER94 DNA DNA 3 133 -1 254 167 21 0 chr13 12859880 12859928 -89013241 - L1M4c LINE L1 -6207 177 129 534 160 10 0 chr13 12859928 12860028 -89013141 + LTR47A LTR ERVL 329 429 -23 1668 269 70 29 chr13 12860079 12860633 -89012536 - MLT1E LTR MaLR -16 577 1 298 241 62 56 chr13 12861269 12861464 -89011705 - L1MC5 LINE L1 -36 7925 7730 180 0 0 0 chr13 12861748 12861768 -89011401 + (TATG)n Simple_repeat Simple_repeat 2 21 0 2057 91 25 7 chr13 12861771 12862056 -89011113 - AluSq SINE Alu -23 290 1 2072 129 0 7 chr13 12862551 12862846 -89010323 - AluSx SINE Alu -19 293 1 21 57 0 0 chr13 12862898 12862933 -89010236 + AT_rich Low_complexity Low_complexity 1 35 0 1406 176 65 11 chr13 12862996 12863274 -89009895 - AluJb SINE Alu -19 293 1 1685 155 0 41 chr13 12864136 12864427 -89008742 - AluJo SINE Alu -33 279 1 1615 77 14 9 chr13 12864629 12864849 -89008320 - AluY SINE Alu -9 302 82 207 219 0 0 chr13 12865807 12865848 -89007321 + T-rich Low_complexity Low_complexity 1 41 0 261 264 101 16 chr13 12866068 12866197 -89006972 + HAL1b LINE L1 742 881 -467 324 289 22 52 chr13 12866297 12866432 -89006737 + HAL1b LINE L1 808 938 -410 254 249 119 50 chr13 12866846 12866994 -89006175 - MIR SINE MIR -45 217 64 1052 212 35 64 chr13 12867601 12867974 -89005195 - L1M4 LINE L1 -5359 1183 822 347 326 149 18 chr13 12868086 12868368 -89004801 - L1M4 LINE L1 -6036 610 292 1347 159 151 0 chr13 12868590 12868835 -89004334 - AluJo SINE Alu -30 282 1 201 274 151 28 chr13 12871376 12871482 -89001687 - MIR SINE MIR -32 230 112 4357 154 45 23 chr13 12871856 12872787 -89000382 - L1P LINE L1 -5184 962 11 21 57 0 0 chr13 12872922 12872957 -89000212 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 12873036 12873057 -89000112 + AT_rich Low_complexity Low_complexity 1 21 0 251 257 169 27 chr13 12873083 12873231 -88999938 + MER112 DNA MER1_type 60 228 -32 2489 121 6 3 chr13 12874422 12874785 -88998384 - THE1B LTR MaLR 0 364 1 294 308 66 0 chr13 12874980 12875071 -88998098 - MIR SINE MIR -67 141 45 2406 64 7 3 chr13 12875170 12875465 -88997704 - AluY SINE Alu -15 296 1 1539 170 32 28 chr13 12875584 12875801 -88997368 - AluJb SINE Alu 0 323 103 1663 154 105 9 chr13 12875801 12876125 -88997044 - THE1A LTR MaLR 0 355 1 1539 170 32 28 chr13 12876125 12876229 -88996940 - AluJb SINE Alu -220 103 1 329 275 62 115 chr13 12876274 12876405 -88996764 - L1MEd LINE L1 -5205 914 778 2414 73 0 0 chr13 12876405 12876694 -88996475 - AluY SINE Alu -19 292 4 329 275 62 115 chr13 12876694 12877257 -88995912 - L1MEd LINE L1 -5341 778 257 22 0 0 0 chr13 12877402 12877424 -88995745 + AT_rich Low_complexity Low_complexity 1 22 0 1560 139 124 15 chr13 12877639 12877905 -88995264 - AluSg SINE Alu -15 295 1 400 282 96 19 chr13 12879155 12879311 -88993858 - MIR SINE MIR -7 255 88 1296 217 91 69 chr13 12880444 12880534 -88992635 - MLT1D LTR MaLR 0 505 418 2505 74 0 7 chr13 12880534 12880844 -88992325 + AluSc SINE Alu 2 309 0 1296 217 91 69 chr13 12880844 12881247 -88991922 - MLT1D LTR MaLR -87 418 1 1939 94 98 4 chr13 12882596 12882862 -88990307 - AluSx SINE Alu -21 291 1 2530 71 0 0 chr13 12882939 12883248 -88989921 - AluY SINE Alu -1 310 2 3670 194 84 84 chr13 12883259 12884109 -88989060 - L1MB8 LINE L1 0 6178 5329 1390 179 43 17 chr13 12884109 12884411 -88988758 - AluJo SINE Alu -2 310 1 3670 194 84 84 chr13 12884411 12884626 -88988543 - L1MB8 LINE L1 -849 5329 5115 1654 134 0 8 chr13 12884626 12884864 -88988305 - AluSx SINE Alu -76 236 1 3670 194 84 84 chr13 12884864 12885232 -88987937 - L1MB8 LINE L1 -1063 5115 4748 278 196 0 0 chr13 12885232 12885278 -88987891 - FRAM SINE Alu -63 103 58 3670 194 84 84 chr13 12885278 12885669 -88987500 - L1MB8 LINE L1 -1430 4748 4315 1739 103 22 37 chr13 12885674 12885894 -88987275 - L1MA5 LINE L1 -2 6298 6081 1552 197 93 7 chr13 12885894 12886204 -88986965 + MER1B DNA MER1_type 1 337 0 1739 103 22 37 chr13 12886204 12886256 -88986913 - L1MA5 LINE L1 -219 6081 6030 343 87 0 0 chr13 12886583 12886629 -88986540 - MLT1B LTR MaLR -2 388 343 1692 184 0 0 chr13 12886631 12886913 -88986256 + MER7A DNA MER2_type 67 346 0 1515 167 113 72 chr13 12886915 12887304 -88985865 - MLT1C LTR MaLR -57 410 6 998 255 87 54 chr13 12888700 12889124 -88984045 - L1ME3 LINE L1 -81 6081 5644 2145 75 4 0 chr13 12889172 12889439 -88983730 - AluSp SINE Alu -45 268 1 26 50 0 0 chr13 12890479 12890519 -88982650 + AT_rich Low_complexity Low_complexity 1 40 0 1259 196 79 192 chr13 12892032 12892266 -88980903 + L1ME3 LINE L1 5459 5718 -444 2045 114 31 0 chr13 12892266 12892555 -88980614 + AluSp SINE Alu 1 298 -15 1259 196 79 192 chr13 12892555 12893107 -88980062 + L1ME3 LINE L1 5718 6156 -6 2508 59 7 0 chr13 12893150 12893453 -88979716 - AluSp SINE Alu -8 305 1 26 50 0 0 chr13 12894493 12894533 -88978636 + AT_rich Low_complexity Low_complexity 1 40 0 1870 95 57 8 chr13 12897768 12898030 -88975139 + AluSg SINE Alu 31 305 -5 1117 117 151 34 chr13 12898152 12898358 -88974811 + MER30 DNA MER1_type 1 230 0 192 304 162 40 chr13 12898457 12898605 -88974564 - L3 LINE CR1 -193 1384 1219 187 270 169 11 chr13 12898740 12898829 -88974340 + MER5A DNA MER1_type 29 131 -58 1717 144 72 4 chr13 12898982 12899259 -88973910 - AluJo SINE Alu -16 296 1 4987 217 103 14 chr13 12899798 12900101 -88973068 + L1M4 LINE L1 3585 3860 -2286 2554 63 0 0 chr13 12900101 12900400 -88972769 + AluY SINE Alu 3 301 -10 4987 217 103 14 chr13 12900400 12900677 -88972492 + L1M4 LINE L1 3860 4111 -2035 2315 91 0 0 chr13 12900677 12900975 -88972194 + AluSx SINE Alu 1 298 -14 4987 217 103 14 chr13 12900975 12901815 -88971354 + L1M4 LINE L1 4111 5133 -1013 1042 161 50 5 chr13 12901816 12902015 -88971154 + AluJo SINE Alu 1 208 -104 2668 121 6 3 chr13 12902688 12903051 -88970118 - THE1B LTR MaLR 0 364 1 299 297 66 0 chr13 12903246 12903337 -88969832 - MIR SINE MIR -67 141 45 2411 65 7 3 chr13 12903436 12903730 -88969439 - AluY SINE Alu -16 295 1 1530 170 32 28 chr13 12903849 12904066 -88969103 - AluJb SINE Alu 0 323 103 1772 164 105 9 chr13 12904066 12904390 -88968779 - THE1A LTR MaLR 0 355 1 1530 170 32 28 chr13 12904390 12904494 -88968675 - AluJb SINE Alu -220 103 1 2311 69 14 0 chr13 12904670 12904958 -88968211 - AluY SINE Alu -19 292 1 296 113 132 0 chr13 12904958 12905011 -88968158 - MER68 LTR ERV1 -501 61 2 385 203 49 74 chr13 12905012 12905175 -88967994 - L1MC4 LINE L1 -646 7396 7238 * 1221 257 115 6 chr13 12905157 12905734 -88967435 - L1MC4a LINE L1 -791 7060 6467 375 113 0 0 chr13 12905921 12905983 -88967186 + (CA)n Simple_repeat Simple_repeat 1 62 0 497 143 0 11 chr13 12906795 12906886 -88966283 + (TA)n Simple_repeat Simple_repeat 1 90 0 1507 169 10 40 chr13 12906887 12907188 -88965981 - AluJo SINE Alu -17 295 4 301 273 64 87 chr13 12907188 12907360 -88965809 - L1MC4a LINE L1 -2001 5807 5640 2342 100 0 25 chr13 12907594 12907914 -88965255 + AluSx SINE Alu 1 312 0 3048 189 52 9 chr13 12907915 12908556 -88964613 + L1 LINE L1 4369 5036 -1110 1286 101 37 5 chr13 12908557 12908746 -88964423 - AluSc SINE Alu -10 299 105 652 111 0 0 chr13 12908750 12908840 -88964329 - LTR12 LTR ERV1 0 714 625 345 128 75 85 chr13 12908847 12908941 -88964228 - LTR30 LTR ERV1 -98 624 378 1163 130 149 7 chr13 12908968 12909183 -88963986 - LTR12 LTR ERV1 -417 2021 60 291 122 0 0 chr13 12909160 12909201 -88963968 - LTR12 LTR ERV1 -524 190 150 * 1415 222 151 7 chr13 12909350 12909760 -88963409 - MLT2B1 LTR ERVL -50 470 2 393 248 47 31 chr13 12910388 12910517 -88962652 + MIR SINE MIR 61 191 -71 580 226 17 0 chr13 12912038 12912153 -88961016 - MER94 DNA DNA -1 133 17 233 203 68 0 chr13 12912633 12912692 -88960477 + L2 LINE L2 3208 3270 -2 324 197 197 0 chr13 12913377 12913494 -88959675 + L1M4 LINE L1 2416 2555 -3591 705 276 80 46 chr13 12913503 12913820 -88959349 + L1ME3A LINE L1 5566 5899 -271 2391 109 0 0 chr13 12913820 12914132 -88959037 + AluSx SINE Alu 1 312 0 705 276 80 46 chr13 12914132 12914187 -88958982 + L1ME3A LINE L1 5899 5951 -219 1073 123 0 59 chr13 12915607 12915818 -88957351 + AluY SINE Alu 136 335 0 540 311 110 23 chr13 12916366 12916995 -88956174 + L2 LINE L2 2637 3313 0 26 50 0 0 chr13 12917000 12917040 -88956129 + AT_rich Low_complexity Low_complexity 1 40 0 2155 102 46 0 chr13 12917191 12917476 -88955693 - AluSx SINE Alu -6 306 9 2137 96 46 0 chr13 12917495 12917777 -88955392 - AluSx SINE Alu -1 311 17 2486 91 0 0 chr13 12917820 12918128 -88955041 - AluSg SINE Alu -2 308 1 300 169 0 108 chr13 12918741 12918936 -88954233 + GA-rich Low_complexity Low_complexity 3 176 0 2018 105 0 0 chr13 12919035 12919302 -88953867 - AluSx SINE Alu -45 267 1 472 254 65 30 chr13 12920922 12921091 -88952078 + MER5B DNA MER1_type 1 175 -3 504 287 62 54 chr13 12921186 12921444 -88951725 - MIR SINE MIR -2 260 1 224 318 165 0 chr13 12923012 12923097 -88950072 + MIR SINE MIR 48 146 -116 235 311 22 0 chr13 12923187 12923277 -88949892 + MIR SINE MIR 171 262 0 233 291 0 0 chr13 12923449 12923504 -88949665 + L2 LINE L2 3210 3264 -8 2114 138 0 0 chr13 12923829 12924119 -88949050 + AluSx SINE Alu 1 290 -22 1419 234 92 43 chr13 12924442 12924886 -88948283 + MLT1C LTR MaLR 2 467 0 686 234 50 98 chr13 12925277 12925559 -88947610 + L1M4c LINE L1 1397 1691 -4692 1757 168 3 3 chr13 12925559 12925850 -88947319 + AluJo SINE Alu 5 295 -17 686 234 50 98 chr13 12925850 12926080 -88947089 + L1M4c LINE L1 1691 2156 -4227 1606 89 0 0 chr13 12926104 12926306 -88946863 + AluSg SINE Alu 1 202 -108 341 301 104 26 chr13 12926575 12926768 -88946401 - MIR SINE MIR -48 214 7 2550 50 0 0 chr13 12926957 12927256 -88945913 + AluY SINE Alu 1 299 -12 37 39 0 0 chr13 12927813 12927864 -88945305 + AT_rich Low_complexity Low_complexity 1 51 0 2443 80 0 0 chr13 12928586 12928886 -88944283 + AluSx SINE Alu 1 300 -12 231 245 88 29 chr13 12929184 12929286 -88943883 + L2 LINE L2 2932 3039 -233 189 368 0 0 chr13 12929433 12929490 -88943679 + L2 LINE L2 3234 3290 -23 31 26 0 0 chr13 12930883 12930921 -88942248 + AT_rich Low_complexity Low_complexity 1 38 0 900 201 165 25 chr13 12930976 12931255 -88941914 - MER2 DNA MER2_type 0 345 28 1242 210 205 7 chr13 12931394 12931969 -88941200 + L1M4c LINE L1 2507 3195 -3187 262 297 106 59 chr13 12931976 12932232 -88940937 - LTR16A1 LTR ERVL -2 455 188 11684 111 38 57 chr13 12933509 12933848 -88939321 - Tigger1 DNA MER2_type 0 2418 2074 730 33 0 0 chr13 12933848 12933938 -88939231 - AluY SINE Alu -8 303 214 11684 111 38 57 chr13 12933938 12935669 -88937500 - Tigger1 DNA MER2_type -344 2074 300 573 149 0 0 chr13 12935680 12935774 -88937395 - AluSp/q SINE Alu -19 294 201 901 134 23 12 chr13 12935905 12936076 -88937093 + Tigger1 DNA MER2_type 300 472 -1946 180 0 0 0 chr13 12936078 12936098 -88937071 + (CA)n Simple_repeat Simple_repeat 1 20 0 2252 90 24 0 chr13 12936107 12936397 -88936772 + AluSc SINE Alu 3 299 -10 2742 189 52 9 chr13 12936398 12937039 -88936130 - L1 LINE L1 -1110 5036 4369 2370 97 0 25 chr13 12937040 12937360 -88935809 - AluSx SINE Alu 0 312 1 1621 164 10 39 chr13 12937766 12938078 -88935091 + AluJo SINE Alu 4 306 -6 383 173 12 0 chr13 12938078 12938159 -88935010 + (TA)n Simple_repeat Simple_repeat 1 82 0 243 0 0 0 chr13 12938162 12938189 -88934980 + (CA)n Simple_repeat Simple_repeat 2 28 0 375 113 0 0 chr13 12938979 12939041 -88934128 + (TG)n Simple_repeat Simple_repeat 1 62 0 288 0 0 0 chr13 12939131 12939163 -88934006 + (TG)n Simple_repeat Simple_repeat 1 32 0 1487 249 116 2 chr13 12939238 12939775 -88933394 + L1MC4 LINE L1 6463 7060 -982 1465 247 87 35 chr13 12939801 12939965 -88933204 + L1MC4 LINE L1 7238 7392 -650 2077 186 118 33 chr13 12939965 12940018 -88933151 + MER68 LTR ERV1 2 49 -513 2270 70 17 7 chr13 12940018 12940319 -88932850 + AluY SINE Alu 1 304 -7 2077 186 118 33 chr13 12940319 12940782 -88932387 + MER68 LTR ERV1 49 562 0 1465 247 87 35 chr13 12940782 12941249 -88931920 + L1MC4 LINE L1 7392 7902 -140 257 130 56 0 chr13 12941252 12941306 -88931863 + L1MC4 LINE L1 7986 8042 0 411 319 141 4 chr13 12944182 12944423 -88928746 - L2 LINE L2 -1026 2288 2015 3440 188 22 39 chr13 12944725 12945505 -88927664 + L1MC2 LINE L1 4409 5151 -1193 2103 95 42 0 chr13 12945505 12945788 -88927381 + AluSp SINE Alu 1 295 -18 3440 188 22 39 chr13 12945788 12946582 -88926587 + L1MC2 LINE L1 5151 5957 -387 979 228 98 70 chr13 12946648 12946812 -88926357 + L1MC4 LINE L1 7177 7335 -707 1629 192 10 3 chr13 12946812 12947104 -88926065 + AluJo SINE Alu 1 294 -18 979 228 98 70 chr13 12947104 12947421 -88925748 + L1MC4 LINE L1 7335 7671 -371 1638 167 0 26 chr13 12947456 12947725 -88925444 + AluJo SINE Alu 1 262 -50 432 313 24 24 chr13 12948805 12948969 -88924200 - MER5B DNA MER1_type -22 167 4 208 239 43 0 chr13 12948979 12949025 -88924144 + L3 LINE CR1 1528 1575 -2 441 230 186 6 chr13 12949139 12949300 -88923869 - MIR SINE MIR -49 213 24 2130 117 10 3 chr13 12949775 12950075 -88923094 + AluSq SINE Alu 1 302 -11 518 301 11 27 chr13 12950149 12950332 -88922837 + MIR SINE MIR 21 200 -62 1057 111 26 214 chr13 12950392 12950575 -88922594 - Tigger4(Zombi) DNA MER2_type 0 2731 2572 408 52 0 0 chr13 12950575 12950633 -88922536 - AluSp/q SINE Alu -12 301 244 1057 111 26 214 chr13 12950633 12950733 -88922436 - Tigger4(Zombi) DNA MER2_type -159 2572 2455 376 315 151 21 chr13 12950940 12951509 -88921660 + L1MC4a LINE L1 5255 5897 -1911 957 118 0 0 chr13 12951542 12951669 -88921500 + AluSq/x SINE Alu 1 127 -185 497 148 0 12 chr13 12951946 12952027 -88921142 - FLAM_A SINE Alu -14 128 49 21 0 0 0 chr13 12953920 12953941 -88919228 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr13 12954029 12954053 -88919116 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 620 234 8 8 chr13 12954053 12954177 -88918992 - L2 LINE L2 -13 3259 3136 186 347 160 0 chr13 12954509 12954584 -88918585 + L2 LINE L2 3196 3282 -31 288 0 0 0 chr13 12954602 12954634 -88918535 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 506 291 243 8 chr13 12954906 12955338 -88917831 + L2 LINE L2 2597 3129 -184 228 250 262 0 chr13 12955367 12955451 -88917718 + L2 LINE L2 3136 3241 -31 207 0 0 0 chr13 12956198 12956221 -88916948 + (TAA)n Simple_repeat Simple_repeat 2 24 0 809 138 39 15 chr13 12956221 12956351 -88916818 + FLAM_C SINE Alu 1 133 0 189 74 0 0 chr13 12956352 12956379 -88916790 + (GA)n Simple_repeat Simple_repeat 2 28 0 1818 170 14 3 chr13 12956632 12956921 -88916248 - AluJo SINE Alu -20 292 1 419 252 123 22 chr13 12957558 12957733 -88915436 + MIR SINE MIR 3 191 -71 238 339 91 25 chr13 12957853 12957974 -88915195 + MIR SINE MIR 83 211 -51 235 348 143 27 chr13 12958144 12958256 -88914913 + L2 LINE L2 3132 3256 -16 244 241 9 45 chr13 12959141 12959253 -88913916 + L1MC4a LINE L1 5794 5901 -1907 21 0 0 0 chr13 12959290 12959311 -88913858 + AT_rich Low_complexity Low_complexity 1 21 0 304 370 123 24 chr13 12959443 12959633 -88913536 + L1MC4a LINE L1 6179 6349 -1459 2259 136 0 0 chr13 12959633 12959941 -88913228 + AluSx SINE Alu 1 308 -4 304 370 123 24 chr13 12959941 12960131 -88913038 + L1MC4a LINE L1 6349 6597 -1211 431 275 38 7 chr13 12960132 12960322 -88912847 + L1MC5 LINE L1 6660 6788 -1173 6872 31 0 0 chr13 12960327 12961137 -88912032 + L1PA3 LINE L1 5346 6155 0 1695 153 69 4 chr13 12961265 12961539 -88911630 + AluSx SINE Alu 1 292 -20 540 216 92 133 chr13 12961618 12962226 -88910943 + L1MC5 LINE L1 7014 7573 -388 2142 79 24 10 chr13 12962226 12962517 -88910652 + AluSg SINE Alu 1 295 -15 540 216 92 133 chr13 12962517 12962825 -88910344 + L1MC5 LINE L1 7573 7892 -69 187 279 93 12 chr13 12963103 12963189 -88909980 - MIR3 SINE MIR -54 154 62 598 231 112 24 chr13 12964358 12964609 -88908560 - Charlie7 DNA MER1_type -230 2382 2110 677 279 88 0 chr13 12964652 12964856 -88908313 + MIR SINE MIR 6 227 -35 1538 163 27 27 chr13 12964877 12965177 -88907992 - AluJo SINE Alu -12 300 1 232 253 267 9 chr13 12965201 12965426 -88907743 - Charlie7 DNA MER1_type -2239 373 91 1115 133 8 113 chr13 12965534 12965816 -88907353 + AluJo SINE Alu 86 312 0 1027 163 17 22 chr13 12967280 12967458 -88905711 + AluJo SINE Alu 82 258 -54 2472 70 3 0 chr13 12968528 12968830 -88904339 + AluY SINE Alu 1 303 -8 1447 140 42 114 chr13 12969130 12969488 -88903681 + Tigger3(Golem) DNA MER2_type 2 3013 -16 324 306 142 19 chr13 12969822 12970083 -88903086 + L1ME3A LINE L1 5592 5884 -286 1097 182 22 26 chr13 12970977 12971246 -88901923 - Tigger1 DNA MER2_type -2133 285 18 2286 89 3 3 chr13 12971712 12972003 -88901166 - AluSx SINE Alu -21 291 1 1664 254 50 22 chr13 12972005 12972473 -88900696 - L1MDa LINE L1 -3172 3368 2914 188 33 0 33 chr13 12972473 12972503 -88900666 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1463 168 4 0 chr13 12972509 12972741 -88900428 - AluJo SINE Alu -30 282 50 1664 254 50 22 chr13 12972741 12972951 -88900218 - L1MDa LINE L1 -3630 2910 2664 1823 253 64 16 chr13 12972965 12973728 -88899441 - L1MDa LINE L1 -3983 2557 1758 1275 180 9 14 chr13 12974078 12974295 -88898874 - AluJo SINE Alu -96 216 1 251 301 75 0 chr13 12974350 12974443 -88898726 + MIR SINE MIR 61 160 -102 299 286 281 15 chr13 12974746 12974942 -88898227 + MIR SINE MIR 14 261 -1 245 350 99 72 chr13 12974940 12975343 -88897826 - L2 LINE L2 0 3272 2859 * 222 315 98 39 chr13 12975376 12975630 -88897539 - L2 LINE L2 -508 2806 2538 330 324 81 74 chr13 12975711 12976721 -88896448 + L2 LINE L2 2115 3142 -130 235 327 18 26 chr13 12977018 12977131 -88896038 + L2 LINE L2 2917 3028 -244 * 236 292 266 12 chr13 12977112 12977601 -88895568 - L2 LINE L2 -950 2364 1752 1929 128 59 64 chr13 12978345 12978752 -88894417 - MSTC LTR MaLR -6 422 18 1705 143 4 4 chr13 13179117 13179389 -88693780 + AluSx SINE Alu 1 272 -40 207 0 0 0 chr13 13179395 13179418 -88693751 + (TAA)n Simple_repeat Simple_repeat 2 24 0 727 195 31 0 chr13 13180259 13180387 -88692782 - FLAM_A SINE Alu -1 132 1 183 280 40 0 chr13 13180429 13180479 -88692690 - MIR SINE MIR -13 249 198 1898 153 29 63 chr13 13180521 13180828 -88692341 + MLT2C1 LTR ERVL 1 317 -80 1839 107 92 0 chr13 13180828 13181109 -88692060 - AluSq SINE Alu -6 307 1 1898 153 29 63 chr13 13181109 13181166 -88692003 + MLT2C1 LTR ERVL 317 352 -45 342 0 0 0 chr13 13181166 13181204 -88691965 + (CA)n Simple_repeat Simple_repeat 2 39 0 1898 153 29 63 chr13 13181204 13181249 -88691920 + MLT2C1 LTR ERVL 352 397 0 424 261 0 0 chr13 13181262 13181354 -88691815 - MIR SINE MIR -107 155 64 185 312 108 11 chr13 13181744 13181837 -88691332 + L2 LINE L2 3136 3237 -35 298 245 89 19 chr13 13183348 13183506 -88689663 + MIR SINE MIR 40 203 -59 269 279 116 0 chr13 13184198 13184284 -88688885 - L2 LINE L2 -937 2377 2282 902 219 38 162 chr13 13184284 13184759 -88688410 - MLT1E LTR MaLR -1 592 177 353 280 170 10 chr13 13184858 13185058 -88688111 - L2 LINE L2 -1030 2284 2053 396 273 43 43 chr13 13185699 13185838 -88687331 - L2 LINE L2 -1 3271 3133 2172 92 3 0 chr13 13185877 13186169 -88687000 + AluSp SINE Alu 1 293 -20 2205 144 31 89 chr13 13186184 13186669 -88686500 + MER31B LTR ERV1 1 457 -9 215 328 16 0 chr13 13186731 13186792 -88686377 - L2 LINE L2 -203 3069 3008 905 215 16 0 chr13 13186815 13187001 -88686168 + LTR37B LTR ERV1 9 197 -271 207 0 0 0 chr13 13187023 13187046 -88686123 + (T)n Simple_repeat Simple_repeat 1 23 0 1104 211 26 8 chr13 13187065 13187331 -88685838 + LTR37B LTR ERV1 198 468 0 2114 83 36 53 chr13 13187414 13187649 -88685520 - L1MA2 LINE L1 0 6304 6076 1908 138 0 20 chr13 13187649 13187954 -88685215 - AluJb SINE Alu -9 303 5 2114 83 36 53 chr13 13187954 13188079 -88685090 - L1MA2 LINE L1 -228 6076 5950 1902 190 104 40 chr13 13189066 13189565 -88683604 + MER74A LTR ERVL 1 531 -27 634 252 37 23 chr13 13193302 13193520 -88679649 - MER102b DNA MER1_type -2 339 119 449 341 27 23 chr13 13193591 13193811 -88679358 - L3b LINE CR1 -64 1519 1299 224 179 90 30 chr13 13193946 13194013 -88679156 + MIR SINE MIR 75 145 -63 408 298 0 0 chr13 13194083 13194187 -88678982 + MIR SINE MIR 31 134 -128 1775 135 50 0 chr13 13194189 13194470 -88678699 - AluJo SINE Alu -17 295 1 1826 135 0 4 chr13 13194509 13194783 -88678386 - AluSx SINE Alu -37 275 3 233 299 15 0 chr13 13194788 13194855 -88678314 + MIR SINE MIR 123 190 -72 290 325 125 34 chr13 13194906 13195371 -88677798 - L2 LINE L2 -810 2504 1998 244 345 108 21 chr13 13195982 13196176 -88676993 + MIR SINE MIR 20 230 -32 1554 154 0 30 chr13 13201031 13201297 -88671872 - AluJo SINE Alu -39 273 16 1114 239 75 50 chr13 13201374 13201830 -88671339 - MLT1C LTR MaLR 0 467 1 187 203 63 101 chr13 13201830 13201909 -88671260 + L2 LINE L2 3187 3262 -10 1019 54 78 0 chr13 13202508 13202637 -88670532 - MER85 DNA T2_type 0 139 1 2539 58 0 0 chr13 13202721 13203032 -88670137 + AluY SINE Alu 1 311 0 1675 166 0 25 chr13 13204224 13204543 -88668626 - AluJb SINE Alu -1 311 1 267 268 41 21 chr13 13204612 13204709 -88668460 + MER94 DNA DNA 2 100 -34 662 217 94 57 chr13 13205291 13205503 -88667666 + MIR SINE MIR 43 262 0 418 280 0 0 chr13 13205785 13205885 -88667284 + MIR SINE MIR 130 229 -33 220 333 43 11 chr13 13206507 13206600 -88666569 - L3b LINE CR1 -120 1463 1368 200 313 98 0 chr13 13208904 13209016 -88664153 - MIR SINE MIR -66 142 20 22 70 0 0 chr13 13209270 13209313 -88663856 + AT_rich Low_complexity Low_complexity 1 43 0 2052 140 16 82 chr13 13209597 13209708 -88663461 + L1MB3 LINE L1 5174 5291 -889 1502 168 17 24 chr13 13209708 13210005 -88663164 + AluJo SINE Alu 1 295 -17 2052 140 16 82 chr13 13210005 13210391 -88662778 + L1MB3 LINE L1 5291 5633 -547 2998 178 16 60 chr13 13210401 13211030 -88662139 - LTR9 LTR ERV1 -11 601 1 1787 126 22 0 chr13 13211031 13211308 -88661861 + L1MB3 LINE L1 5630 5912 -271 3359 124 2 71 chr13 13211308 13211616 -88661553 + MER4B LTR ERV1 1 250 -360 1907 131 7 0 chr13 13211616 13211906 -88661263 - AluSx SINE Alu -16 296 5 3359 124 2 71 chr13 13211906 13212187 -88660982 + MER4B LTR ERV1 250 549 -61 2035 97 3 17 chr13 13212191 13212481 -88660688 - AluSx SINE Alu -11 301 16 837 273 79 51 chr13 13213050 13213622 -88659547 - HAL1 LINE L1 -794 1713 1126 2113 115 0 7 chr13 13213672 13213968 -88659201 - AluSq SINE Alu -19 294 1 207 0 0 0 chr13 13214358 13214381 -88658788 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1705 143 4 4 chr13 13214387 13214659 -88658510 - AluSx SINE Alu -40 272 1 927 277 97 28 chr13 13215106 13215502 -88657667 + MER57B LTR ERV1 13 434 0 22 0 0 0 chr13 13216023 13216045 -88657124 + AT_rich Low_complexity Low_complexity 1 22 0 839 318 37 41 chr13 13216419 13216884 -88656285 + MLT1K LTR MaLR 102 564 -24 292 242 91 61 chr13 13216942 13217074 -88656095 - MIR SINE MIR -62 200 65 201 318 84 19 chr13 13217076 13217183 -88655986 + L2 LINE L2 3200 3313 0 2343 82 0 3 chr13 13217458 13217761 -88655408 - AluSq SINE Alu -11 302 1 328 279 186 16 chr13 13218337 13218466 -88654703 + MIR SINE MIR 20 170 -92 2485 62 0 0 chr13 13219811 13220119 -88653050 + AluY SINE Alu 1 308 -3 487 295 162 48 chr13 13220251 13220393 -88652776 + L1MC3 LINE L1 5015 5139 -982 186 43 0 0 chr13 13220393 13220416 -88652753 + (CA)n Simple_repeat Simple_repeat 2 24 0 487 295 162 48 chr13 13220416 13221012 -88652157 + L1MC3 LINE L1 5139 5545 -576 293 272 10 19 chr13 13221055 13221158 -88652011 + (TA)n Simple_repeat Simple_repeat 2 103 0 984 250 9 0 chr13 13221173 13221389 -88651780 - MIR SINE MIR -33 229 12 207 114 0 0 chr13 13222620 13222655 -88650514 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 1165 210 36 20 chr13 13222908 13223160 -88650009 - MER58B DNA MER1_type 0 341 86 266 114 0 23 chr13 13223160 13223204 -88649965 + L1 LINE L1 4560 4602 -1544 370 250 25 0 chr13 13223207 13223287 -88649882 - MER58B DNA MER1_type -259 82 1 538 259 79 42 chr13 13223381 13223570 -88649599 + MIR SINE MIR 64 259 -3 1377 246 69 33 chr13 13223872 13224351 -88648818 - MER74B LTR ERVL -52 570 75 270 203 34 0 chr13 13225233 13225292 -88647877 - MIR SINE MIR -5 257 197 229 311 147 65 chr13 13225323 13225677 -88647492 - L2 LINE L2 0 3272 2890 1968 141 85 32 chr13 13225772 13226148 -88647021 - MSTD LTR MaLR 0 396 1 1028 212 35 35 chr13 13226152 13226411 -88646758 - MLT1B LTR MaLR -113 277 19 200 321 76 89 chr13 13226413 13226927 -88646242 - L2 LINE L2 -656 2658 2152 415 260 285 10 chr13 13227087 13227287 -88645882 - MIR SINE MIR -6 256 2 326 284 11 11 chr13 13227297 13227392 -88645777 - MIR SINE MIR -111 151 57 506 298 93 31 chr13 13227478 13227767 -88645402 - L2 LINE L2 -1359 1955 1649 568 313 95 16 chr13 13228120 13228488 -88644681 + L1ME4a LINE L1 5530 5926 -195 2084 129 0 0 chr13 13228940 13229234 -88643935 - AluSq SINE Alu -19 294 1 265 250 155 0 chr13 13229658 13229742 -88643427 + L2 LINE L2 3208 3304 -9 198 311 0 0 chr13 13229753 13229798 -88643371 + MIR SINE MIR 46 90 -172 * 866 346 81 20 chr13 13229788 13230421 -88642748 + L2 LINE L2 2178 2848 -466 185 345 0 0 chr13 13230714 13230772 -88642397 + L2 LINE L2 3201 3258 -14 25 31 0 0 chr13 13232624 13232656 -88640513 + GC_rich Low_complexity Low_complexity 1 32 0 302 181 0 14 chr13 13234610 13234682 -88638487 + CT-rich Low_complexity Low_complexity 4 74 0 324 143 0 0 chr13 13234790 13234846 -88638323 + (TCCC)n Simple_repeat Simple_repeat 4 59 0 1843 157 30 10 chr13 13234938 13235238 -88637931 + AluJb SINE Alu 1 306 -6 300 27 0 0 chr13 13236279 13236316 -88636853 + (CA)n Simple_repeat Simple_repeat 2 38 0 294 269 77 0 chr13 13236531 13236635 -88636534 - MIR SINE MIR -105 157 46 411 247 0 0 chr13 13237157 13237254 -88635915 + MIR SINE MIR 63 159 -103 223 285 89 0 chr13 13237272 13237395 -88635774 - MIR SINE MIR -48 214 81 423 214 255 7 chr13 13237877 13238022 -88635147 - MER5A DNA MER1_type 0 189 9 297 286 143 0 chr13 13238072 13238191 -88634978 + L2 LINE L2 3137 3272 0 234 0 0 0 chr13 13238604 13238630 -88634539 + (CA)n Simple_repeat Simple_repeat 2 27 0 305 284 154 18 chr13 13239036 13239205 -88633964 - MIR SINE MIR -14 248 57 1734 160 0 54 chr13 13239317 13239630 -88633539 - AluJo SINE Alu -16 296 1 2171 115 0 3 chr13 13239856 13240169 -88633000 + AluSx SINE Alu 1 312 0 183 173 19 58 chr13 13241564 13241616 -88631553 + L2 LINE L2 3264 3313 0 451 288 58 47 chr13 13242819 13243010 -88630159 + L3 LINE CR1 710 902 -675 2465 107 123 5 chr13 13243619 13244002 -88629167 - MSTA LTR MaLR 0 428 1 227 191 0 0 chr13 13244483 13244525 -88628644 - MIR SINE MIR -102 160 119 517 270 59 7 chr13 13245375 13245527 -88627642 - MER91B DNA MER1_type -8 182 23 1868 154 20 10 chr13 13246410 13246709 -88626460 + AluJo SINE Alu 11 312 0 26 30 0 0 chr13 13248180 13248213 -88624956 + AT_rich Low_complexity Low_complexity 1 33 0 2332 90 7 0 chr13 13248351 13248650 -88624519 - AluSq SINE Alu -12 301 1 2184 120 0 16 chr13 13249000 13249317 -88623852 - AluSx SINE Alu 0 312 1 203 229 0 0 chr13 13249391 13249426 -88623743 + polypyrimidine Low_complexity Low_complexity 2 36 0 328 244 6 6 chr13 13249428 13249588 -88623581 + CT-rich Low_complexity Low_complexity 2 161 0 339 236 63 47 chr13 13252421 13252548 -88620621 - L2 LINE L2 -1 3312 3184 2227 117 0 0 chr13 13252675 13252987 -88620182 - AluSq SINE Alu 0 313 2 219 36 0 0 chr13 13253125 13253153 -88620016 + (T)n Simple_repeat Simple_repeat 1 28 0 710 242 150 39 chr13 13253172 13253364 -88619805 + MARNA DNA Mariner 243 473 -113 2278 111 53 8 chr13 13253364 13253723 -88619446 + THE1C LTR MaLR 1 375 0 710 242 150 39 chr13 13253723 13253790 -88619379 + MARNA DNA Mariner 473 531 -55 928 143 0 0 chr13 13253925 13254058 -88619111 + AluJb SINE Alu 1 133 -179 189 0 0 0 chr13 13254058 13254079 -88619090 + (A)n Simple_repeat Simple_repeat 1 21 0 1883 189 25 3 chr13 13254403 13254757 -88618412 + MLT2D LTR ERVL 1 362 -52 333 246 239 0 chr13 13255052 13255182 -88617987 - MER5A DNA MER1_type 0 189 29 287 206 29 0 chr13 13255224 13255292 -88617877 + MER5A DNA MER1_type 43 112 -77 243 328 0 0 chr13 13255611 13255678 -88617491 + (CGTG)n Simple_repeat Simple_repeat 4 70 0 1745 181 13 3 chr13 13255697 13255996 -88617173 - AluJo SINE Alu -10 302 1 205 278 96 9 chr13 13256388 13256503 -88616666 + L2 LINE L2 2919 3043 -229 193 269 115 0 chr13 13256808 13256886 -88616283 - MIR SINE MIR -68 194 108 489 194 100 65 chr13 13257591 13257761 -88615408 - LTR45B LTR ERV1 -1 488 313 456 299 111 42 chr13 13259861 13260195 -88612974 + L2 LINE L2 2025 2381 -933 710 219 89 33 chr13 13260527 13260720 -88612449 - MLT1D LTR MaLR 0 505 324 6747 112 62 68 chr13 13260720 13262003 -88611166 + MER52C LTR ERV1 1 1276 -2 710 219 89 33 chr13 13262003 13262197 -88610972 - MLT1D LTR MaLR -181 324 27 309 298 25 0 chr13 13263404 13263525 -88609644 + MER117 DNA MER1_type 39 162 -35 1115 185 177 48 chr13 13264402 13264781 -88608388 - MSTC LTR MaLR 0 428 1 771 251 98 4 chr13 13264784 13265059 -88608110 + L2 LINE L2 1921 2221 -1093 2642 61 0 0 chr13 13266419 13266729 -88606440 - AluY SINE Alu -1 310 1 1539 119 0 0 chr13 13266838 13267056 -88606113 + AluSg/x SINE Alu 85 302 -8 403 256 130 14 chr13 13267087 13267294 -88605875 + MIR SINE MIR 3 233 -29 14106 205 38 18 chr13 13267593 13272855 -88600314 - L1PB3 LINE L1 -1 6210 800 5970 218 112 77 chr13 13272855 13273838 -88599331 - Charlie2a DNA MER1_type -97 2765 1818 7502 43 0 4 chr13 13273838 13275295 -88597874 - L1PA4 LINE L1 -3 6152 4699 5970 218 112 77 chr13 13275295 13276222 -88596947 - Charlie2a DNA MER1_type -1044 1818 739 1680 127 0 0 chr13 13276222 13276443 -88596726 + AluSx SINE Alu 3 223 -89 5970 218 112 77 chr13 13276443 13277128 -88596041 - Charlie2a DNA MER1_type -2123 739 79 1699 157 0 25 chr13 13277182 13277468 -88595701 + AluJo SINE Alu 20 298 -14 1547 239 65 62 chr13 13277631 13278484 -88594685 - L1MC5 LINE L1 -48 7913 7059 28 71 0 0 chr13 13278494 13278550 -88594619 + AT_rich Low_complexity Low_complexity 1 56 0 1542 158 79 7 chr13 13279130 13279433 -88593736 - L1MB5 LINE L1 0 6174 5850 786 225 0 6 chr13 13279504 13279673 -88593496 - L1MB5 LINE L1 -330 5844 5677 180 264 69 0 chr13 13279719 13279791 -88593378 + L2 LINE L2 2941 3017 -255 441 280 105 25 chr13 13279996 13280282 -88592887 - L2 LINE L2 -788 2526 2218 387 0 0 0 chr13 13280352 13280374 -88592795 + (CA)n Simple_repeat Simple_repeat 1 65 0 387 0 0 0 chr13 13280374 13280417 -88592752 + (CA)n Simple_repeat Simple_repeat 2 44 0 1591 197 3 14 chr13 13280570 13280854 -88592315 - AluJo SINE Alu -31 281 1 653 227 117 43 chr13 13281077 13281170 -88591999 + L1MC5 LINE L1 7200 7285 -676 1475 81 90 0 chr13 13281170 13281381 -88591788 + MER30 DNA MER1_type 1 230 0 653 227 117 43 chr13 13281381 13281543 -88591626 + L1MC5 LINE L1 7285 7474 -487 1188 267 70 11 chr13 13281612 13282084 -88591085 - L2 LINE L2 -1478 1836 1337 3684 15 0 0 chr13 13282114 13282526 -88590643 - L1PA4 LINE L1 -3 6152 5741 254 349 92 28 chr13 13283454 13283781 -88589388 - L2 LINE L2 -407 2907 2560 364 250 19 19 chr13 13283837 13283941 -88589228 + L2 LINE L2 3169 3272 0 246 237 42 121 chr13 13284767 13284982 -88588187 + L2 LINE L2 1572 1769 -1545 497 234 82 43 chr13 13284984 13285168 -88588001 - MIR SINE MIR -37 225 35 677 253 104 65 chr13 13285273 13285780 -88587389 - HAL1 LINE L1 -1 2506 1980 1488 213 106 24 chr13 13285823 13286240 -88586929 + HAL1 LINE L1 1251 1701 -806 893 260 96 122 chr13 13286244 13286332 -88586837 - HAL1 LINE L1 -1296 1211 1122 1856 152 26 19 chr13 13286332 13286641 -88586528 - AluSx SINE Alu -1 311 1 893 260 96 122 chr13 13286641 13286914 -88586255 - HAL1 LINE L1 -1385 1122 844 227 238 0 0 chr13 13286914 13286956 -88586213 + MER69 DNA AcHobo 1 42 -2484 893 260 96 122 chr13 13286956 13287642 -88585527 - HAL1 LINE L1 -1663 844 150 356 303 124 8 chr13 13287752 13288099 -88585070 + L2 LINE L2 1830 2286 -1028 302 289 107 20 chr13 13288302 13288451 -88584718 + L2 LINE L2 2719 2880 -434 2367 88 0 19 chr13 13288907 13289224 -88583945 - AluY SINE Alu 0 311 1 213 280 75 29 chr13 13290297 13290420 -88582749 - MER5B DNA MER1_type -30 159 24 198 299 13 39 chr13 13290365 13290442 -88582727 + MER5A DNA MER1_type 113 187 -2 * 2100 191 31 8 chr13 13290702 13291089 -88582080 - MSTD LTR MaLR 0 396 1 340 104 0 0 chr13 13291877 13291925 -88581244 + MER53 DNA DNA 5 52 -137 321 197 92 0 chr13 13291931 13292007 -88581162 - MER53 DNA DNA -84 105 23 * 395 113 113 14 chr13 13291948 13292019 -88581150 + MER53 DNA DNA 112 189 0 2251 109 0 3 chr13 13292521 13292824 -88580345 - AluSq SINE Alu 0 313 12 367 328 194 7 chr13 13293366 13293778 -88579391 - L3 LINE CR1 -11 1566 1078 2393 149 171 21 chr13 13294140 13294656 -88578513 - LTR49 LTR ERV1 -2 593 1 23 0 0 0 chr13 13295848 13295871 -88577298 + AT_rich Low_complexity Low_complexity 1 23 0 462 18 0 0 chr13 13296255 13296310 -88576859 + (TG)n Simple_repeat Simple_repeat 1 55 0 204 135 0 0 chr13 13297518 13297555 -88575614 + (GA)n Simple_repeat Simple_repeat 2 38 0 2846 180 40 64 chr13 13298601 13298721 -88574448 + L1ME2 LINE L1 5460 5581 -583 2122 141 0 6 chr13 13298721 13299033 -88574136 - AluSx SINE Alu -2 310 1 2846 180 40 64 chr13 13299033 13299634 -88573535 + L1ME2 LINE L1 5581 6164 0 207 146 0 0 chr13 13299738 13299779 -88573390 + (CA)n Simple_repeat Simple_repeat 2 42 0 1794 125 110 0 chr13 13299964 13300228 -88572941 + AluSx SINE Alu 1 293 -19 225 0 0 0 chr13 13300228 13300253 -88572916 + (TA)n Simple_repeat Simple_repeat 2 26 0 252 171 26 79 chr13 13300293 13300369 -88572800 - MIR SINE MIR -58 150 79 276 338 142 15 chr13 13300507 13300711 -88572458 - MIR SINE MIR -12 250 21 229 271 42 42 chr13 13301178 13301296 -88571873 - L1 LINE L1 -3135 3011 2894 451 301 63 44 chr13 13301493 13301859 -88571310 - L1 LINE L1 -3516 2630 2258 198 71 0 0 chr13 13302290 13302318 -88570851 + (CA)n Simple_repeat Simple_repeat 1 28 0 222 37 0 0 chr13 13302406 13302433 -88570736 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 325 185 176 28 chr13 13302789 13302897 -88570272 - L2 LINE L2 -10 3303 3180 413 281 40 58 chr13 13302910 13303134 -88570035 - L2 LINE L2 -287 3026 2807 1139 180 14 5 chr13 13303369 13303586 -88569583 - L1MC3 LINE L1 -1585 6200 5982 597 245 49 12 chr13 13303829 13303992 -88569177 + MLT1H LTR MaLR 2 170 -379 1053 9 0 0 chr13 13304263 13304379 -88568790 + AluYb8 SINE Alu 200 315 -3 6070 135 174 7 chr13 13304731 13305826 -88567343 - MER52C LTR ERV1 0 1278 1 501 272 120 0 chr13 13306117 13306275 -88566894 + MER5B DNA MER1_type 1 177 -1 368 292 41 59 chr13 13306547 13306766 -88566403 - LTR33 LTR ERVL -306 215 1 25 99 0 0 chr13 13306820 13306901 -88566268 + AT_rich Low_complexity Low_complexity 1 81 0 23 0 0 0 chr13 13306990 13307013 -88566156 + AT_rich Low_complexity Low_complexity 1 23 0 203 211 0 0 chr13 13307667 13307705 -88565464 - L2 LINE L2 -200 3072 3035 3103 222 45 58 chr13 13307811 13308008 -88565161 - MER21B LTR ERV1 -11 852 654 2701 179 70 49 chr13 13308008 13308683 -88564486 + LTR8 LTR ERV1 3 691 0 3103 222 45 58 chr13 13308683 13309337 -88563832 - MER21B LTR ERV1 -209 654 12 255 176 37 139 chr13 13309357 13309465 -88563704 - MER102b DNA MER1_type -24 317 221 1130 263 14 10 chr13 13309614 13309907 -88563262 + MER87 LTR ERV1 198 491 -50 1845 213 86 72 chr13 13310058 13310482 -88562687 - L1ME1 LINE L1 -46 6915 6478 2127 135 6 6 chr13 13310482 13310793 -88562376 - AluSx SINE Alu -1 311 1 1845 213 86 72 chr13 13310793 13311008 -88562161 - L1ME1 LINE L1 -483 6478 6267 3040 142 129 5 chr13 13311011 13311576 -88561593 - LTR24C LTR ERV1 0 635 1 740 225 5 5 chr13 13311599 13311870 -88561299 - L1ME1 LINE L1 -743 6198 5970 874 192 10 43 chr13 13311902 13312110 -88561059 - L1ME1 LINE L1 -2145 4796 4596 253 214 0 0 chr13 13312133 13312175 -88560994 - AluJ/monomer SINE Alu -258 43 2 * 263 143 0 24 chr13 13312142 13312184 -88560985 - AluSp SINE Alu -134 169 129 3344 236 38 30 chr13 13312218 13313286 -88559883 - L1ME1 LINE L1 -2704 4237 3161 2198 115 23 0 chr13 13313288 13313592 -88559577 - AluSx SINE Alu -1 311 1 535 243 57 0 chr13 13313637 13313777 -88559392 - L1ME1 LINE L1 -5460 963 816 406 260 76 48 chr13 13313998 13314332 -88558837 - L1ME1 LINE L1 -5689 733 57 306 235 83 53 chr13 13314342 13314474 -88558695 - MER102b DNA MER1_type -173 168 33 608 313 35 67 chr13 13314713 13314847 -88558322 + L1ME4a LINE L1 4405 4542 -1604 2457 49 0 3 chr13 13314847 13315159 -88558010 + AluY SINE Alu 1 311 0 608 313 35 67 chr13 13315159 13315678 -88557491 + L1ME4a LINE L1 4542 5038 -1108 3635 84 2 6 chr13 13315695 13316184 -88556985 - L1PA8 LINE L1 0 6172 5686 1024 42 0 0 chr13 13316184 13316304 -88556865 + L1PA8 LINE L1 5562 5681 -491 285 291 126 24 chr13 13316608 13316683 -88556486 + L1ME4a LINE L1 5452 5518 -603 1918 220 48 22 chr13 13316683 13317138 -88556031 - MLT1C LTR MaLR 0 467 1 285 291 126 24 chr13 13317138 13317189 -88555980 + L1ME4a LINE L1 5518 5591 -530 728 267 67 51 chr13 13317290 13317646 -88555523 - MER83C LTR ERV1 -10 363 2 358 211 196 31 chr13 13317670 13317864 -88555305 + L1ME4a LINE L1 5725 5950 -171 1166 40 213 35 chr13 13317890 13318064 -88555105 + AluY SINE Alu 1 205 -106 206 276 86 31 chr13 13318371 13318534 -88554635 - L2 LINE L2 -38 3275 3104 1337 259 144 17 chr13 13318597 13319309 -88553860 - L2 LINE L2 -185 3128 2346 5535 30 3 0 chr13 13319798 13320438 -88552731 + L1PA4 LINE L1 5514 6155 0 2481 80 0 6 chr13 13320456 13320769 -88552400 + AluSp SINE Alu 3 313 0 792 262 83 49 chr13 13321734 13322268 -88550901 - MLT1L LTR MaLR -1 614 26 2791 128 17 7 chr13 13322268 13322690 -88550479 + MSTB LTR MaLR 1 426 0 792 262 83 49 chr13 13322690 13322714 -88550455 - MLT1L LTR MaLR -589 26 4 1057 276 72 21 chr13 13322716 13323144 -88550025 + L2 LINE L2 2030 2479 -835 212 185 0 56 chr13 13323204 13323258 -88549911 + L2 LINE L2 3263 3313 0 322 226 57 48 chr13 13323731 13323855 -88549314 - MLT1H LTR MaLR -2 547 423 501 265 80 33 chr13 13323978 13324170 -88548999 - MLT1H LTR MaLR -339 210 22 214 262 0 0 chr13 13324491 13324533 -88548636 + polypurine Low_complexity Low_complexity 2 43 0 376 274 10 0 chr13 13325780 13325882 -88547287 - MIR3 SINE MIR -38 170 68 276 315 79 45 chr13 13327735 13327853 -88545316 - MIR3 SINE MIR -21 187 60 1439 218 44 7 chr13 13327853 13328151 -88545018 + AluJb SINE Alu 1 309 -3 276 315 79 45 chr13 13328151 13328210 -88544959 - MIR3 SINE MIR -148 60 4 362 284 43 35 chr13 13328877 13329018 -88544151 - MIR SINE MIR -1 261 120 2427 80 0 3 chr13 13329401 13329702 -88543467 + AluSc SINE Alu 1 300 -9 710 219 89 33 chr13 13329998 13330191 -88542978 - MLT1D LTR MaLR 0 505 324 6747 112 62 68 chr13 13330191 13331474 -88541695 + MER52C LTR ERV1 1 1276 -2 710 219 89 33 chr13 13331474 13331668 -88541501 - MLT1D LTR MaLR -181 324 27 312 298 25 0 chr13 13332875 13332996 -88540173 + MER117 DNA MER1_type 39 162 -35 1114 185 177 48 chr13 13333872 13334251 -88538918 - MSTC LTR MaLR 0 428 1 881 251 98 4 chr13 13334254 13334529 -88538640 + L2 LINE L2 1921 2221 -1093 365 306 161 25 chr13 13334833 13335032 -88538137 + HAL1b LINE L1 1110 1335 -13 2485 52 0 3 chr13 13335889 13336199 -88536970 - AluY SINE Alu -1 310 2 693 185 0 15 chr13 13337047 13337182 -88535987 - FLAM_A SINE Alu 0 133 1 360 280 133 14 chr13 13338414 13338557 -88534612 - L2 LINE L2 -120 3152 2993 1364 150 65 56 chr13 13339214 13339372 -88533797 - L1MA10 LINE L1 -1 6333 6169 378 0 0 0 chr13 13339372 13339414 -88533755 + (TG)n Simple_repeat Simple_repeat 2 43 0 1364 150 65 56 chr13 13339414 13339561 -88533608 - L1MA10 LINE L1 -165 6169 6025 1141 119 0 0 chr13 13339551 13339719 -88533450 + L1M3 LINE L1 5573 5740 -594 * 225 292 180 0 chr13 13340571 13340660 -88532509 - MIR3 SINE MIR -6 202 98 * 266 313 14 61 chr13 13340658 13340805 -88532364 - L2 LINE L2 -1 3271 3132 231 324 14 27 chr13 13341036 13341110 -88532059 - L2 LINE L2 0 3272 3200 465 237 90 34 chr13 13341161 13341338 -88531831 - MER112 DNA MER1_type -8 252 66 245 227 17 62 chr13 13341506 13341645 -88531524 - MLT1I LTR MaLR 0 577 348 373 252 111 75 chr13 13341670 13341896 -88531273 - MLT1H LTR MaLR -207 342 109 441 264 62 0 chr13 13342334 13342463 -88530706 + MIR3 SINE MIR 60 196 -12 880 228 53 15 chr13 13343190 13343396 -88529773 + MIR SINE MIR 47 260 -2 1975 84 29 0 chr13 13345587 13345898 -88527271 - AluY SINE Alu 0 319 1 2248 98 3 0 chr13 13347901 13348206 -88524963 + AluSp SINE Alu 1 306 -7 24 0 0 0 chr13 13348365 13348389 -88524780 + AT_rich Low_complexity Low_complexity 1 24 0 2201 136 25 17 chr13 13348667 13349028 -88524141 - MLT1A1 LTR MaLR 0 365 2 941 73 0 7 chr13 13349199 13349335 -88523834 + (TTCC)n Simple_repeat Simple_repeat 2 136 0 410 285 38 38 chr13 13349440 13349626 -88523543 - L2 LINE L2 -183 3089 2904 488 341 49 31 chr13 13349774 13349997 -88523172 - MIR SINE MIR -10 252 26 1587 273 50 0 chr13 13349997 13350393 -88522776 - MLT1J LTR MaLR 0 511 96 236 362 101 29 chr13 13350746 13350884 -88522285 + L2 LINE L2 3121 3268 -4 622 317 53 15 chr13 13351676 13351941 -88521228 - L3 LINE CR1 -1 1576 1302 1967 247 112 17 chr13 13351941 13352004 -88521165 - MLT1E LTR MaLR 0 593 537 1687 125 8 4 chr13 13352004 13352252 -88520917 - AluSq SINE Alu -17 296 48 1967 247 112 17 chr13 13352252 13352723 -88520446 - MLT1E LTR MaLR -56 537 8 225 344 44 0 chr13 13352728 13352818 -88520351 - L3 LINE CR1 -270 1307 1214 1872 148 10 6 chr13 13353852 13354163 -88519006 + AluSx SINE Alu 1 312 0 545 284 16 31 chr13 13354434 13354596 -88518573 + MIR SINE MIR 30 187 -62 340 314 152 0 chr13 13355589 13355694 -88517475 - L2 LINE L2 -1 3271 3151 1895 135 3 25 chr13 13356055 13356373 -88516796 + AluSx SINE Alu 1 311 -1 430 288 131 49 chr13 13356532 13356838 -88516331 + MARNA DNA Mariner 125 455 -131 28 0 0 0 chr13 13356987 13357015 -88516154 + AT_rich Low_complexity Low_complexity 1 28 0 39 95 0 0 chr13 13357292 13357408 -88515761 + AT_rich Low_complexity Low_complexity 1 116 0 458 289 21 7 chr13 13357905 13358047 -88515122 - MIR SINE MIR 0 262 119 207 107 0 0 chr13 13358945 13358973 -88514196 - MIR SINE MIR -9 253 226 198 339 62 0 chr13 13358947 13359012 -88514157 - L2 LINE L2 -17 3255 3187 * 220 301 27 14 chr13 13359219 13359292 -88513877 + L2 LINE L2 3234 3307 -6 387 0 0 0 chr13 13359579 13359622 -88513547 + (CCCTG)n Simple_repeat Simple_repeat 1 43 0 237 336 21 21 chr13 13359964 13360104 -88513065 + MIR SINE MIR 50 189 -73 386 298 161 53 chr13 13360243 13360659 -88512510 + L2 LINE L2 2811 3271 -1 353 240 140 33 chr13 13360707 13360857 -88512312 + MIR SINE MIR 97 262 0 815 254 30 0 chr13 13361066 13361263 -88511906 - MLT1B LTR MaLR 0 390 188 545 216 85 51 chr13 13361292 13361468 -88511701 - MLT1B LTR MaLR -186 188 7 455 177 10 0 chr13 13361719 13361815 -88511354 + CT-rich Low_complexity Low_complexity 3 99 0 370 242 194 16 chr13 13363376 13363500 -88509669 + MIR SINE MIR 117 262 0 1160 280 223 24 chr13 13364072 13364993 -88508176 + L2 LINE L2 1233 2336 -978 199 339 17 35 chr13 13365170 13365285 -88507884 + L2 LINE L2 2992 3104 -168 311 265 30 90 chr13 13365337 13365537 -88507632 - L2 LINE L2 -3 3310 3123 242 33 0 0 chr13 13365572 13365602 -88507567 + MADE1 DNA Mariner 1 30 -50 390 253 48 89 chr13 13365678 13365947 -88507222 - L2 LINE L2 -142 3171 2914 271 310 69 37 chr13 13366422 13366638 -88506531 + L2 LINE L2 2301 2523 -791 203 200 108 46 chr13 13368161 13368226 -88504943 - L3 LINE CR1 -129 1448 1380 822 241 58 75 chr13 13368810 13369105 -88504064 + L2 LINE L2 3024 3313 0 1892 145 47 33 chr13 13369274 13369633 -88503536 - THE1B LTR MaLR 0 364 1 252 356 63 23 chr13 13370308 13370482 -88502687 - L2 LINE L2 -30 3283 3103 3449 264 60 54 chr13 13370645 13370958 -88502211 - L2 LINE L2 -1341 1973 1663 1639 174 6 25 chr13 13370958 13371275 -88501894 - AluJo SINE Alu -1 311 1 3449 264 60 54 chr13 13371275 13372305 -88500864 - L2 LINE L2 -1651 1663 623 328 307 111 33 chr13 13372677 13372904 -88500265 + L1M4 LINE L1 4477 4685 -1461 1573 174 0 27 chr13 13372904 13373198 -88499971 + AluJo SINE Alu 5 290 -22 328 307 111 33 chr13 13373198 13373521 -88499648 + L1M4 LINE L1 4685 5070 -1076 288 137 0 0 chr13 13373790 13373841 -88499328 + (TA)n Simple_repeat Simple_repeat 1 51 0 366 33 50 0 chr13 13374962 13375022 -88498147 + (CA)n Simple_repeat Simple_repeat 1 63 0 522 259 49 27 chr13 13375368 13375553 -88497616 - MIR SINE MIR -72 190 2 1815 137 0 20 chr13 13375773 13376065 -88497104 + AluJo SINE Alu 11 296 -16 613 239 7 0 chr13 13377758 13377896 -88495273 + MER105 DNA DNA 46 184 -20 186 103 0 0 chr13 13379126 13379155 -88494014 + (CTG)n Simple_repeat Simple_repeat 3 31 0 192 167 167 0 chr13 13380253 13380307 -88492862 + MIR3 SINE MIR 105 167 -41 182 309 0 0 chr13 13380925 13380967 -88492202 - L2 LINE L2 -20 3252 3211 811 230 9 71 chr13 13381836 13382062 -88491107 + MIR SINE MIR 26 237 -25 813 256 242 3 chr13 13383048 13383411 -88489758 - MLT1J2 LTR MaLR 0 450 1 1386 158 57 73 chr13 13383541 13383857 -88489312 - AluJo SINE Alu -1 311 1 441 260 6 18 chr13 13386364 13386533 -88486636 + (CA)n Simple_repeat Simple_repeat 1 167 0 437 294 0 27 chr13 13386733 13387108 -88486061 + (CA)n Simple_repeat Simple_repeat 1 364 0 331 326 0 11 chr13 13387227 13387402 -88485767 + (CA)n Simple_repeat Simple_repeat 1 173 0 459 264 0 16 chr13 13387414 13387596 -88485573 + (CA)n Simple_repeat Simple_repeat 1 179 0 392 283 0 23 chr13 13387638 13387815 -88485354 + (CA)n Simple_repeat Simple_repeat 2 174 0 197 206 0 14 chr13 13387859 13387932 -88485237 + (CA)n Simple_repeat Simple_repeat 1 72 0 234 283 0 22 chr13 13387945 13388037 -88485132 + (CA)n Simple_repeat Simple_repeat 1 90 0 680 239 147 38 chr13 13389578 13389892 -88483277 - MER7A DNA MER2_type 0 346 1 1166 274 65 45 chr13 13390121 13390653 -88482516 - L2 LINE L2 -5 3308 2774 190 321 60 12 chr13 13390758 13390842 -88482327 + L2 LINE L2 2758 2845 -469 422 174 60 0 chr13 13391197 13391364 -88481805 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 330 294 101 17 chr13 13392017 13392136 -88481033 - L3 LINE CR1 -313 1264 1136 924 286 42 18 chr13 13392224 13392560 -88480609 - L3 LINE CR1 -694 883 540 279 0 0 0 chr13 13392764 13392795 -88480374 + (CA)n Simple_repeat Simple_repeat 2 32 0 413 227 160 0 chr13 13393202 13393321 -88479848 + FLAM_C SINE Alu 6 143 0 2271 105 0 6 chr13 13394630 13394944 -88478225 + AluSx SINE Alu 1 312 0 865 173 41 119 chr13 13395345 13395496 -88477673 + MIR SINE MIR 39 165 -97 1805 153 0 14 chr13 13395496 13395791 -88477378 + AluSx SINE Alu 1 291 -21 865 173 41 119 chr13 13395791 13395882 -88477287 + MIR SINE MIR 165 262 0 433 292 77 29 chr13 13395893 13396102 -88477067 - MLT1L LTR MaLR -47 568 350 203 147 0 0 chr13 13396151 13396185 -88476984 + (CA)n Simple_repeat Simple_repeat 1 34 0 336 208 58 83 chr13 13396185 13396305 -88476864 - MLT1L LTR MaLR -292 323 207 1324 216 83 18 chr13 13397176 13397454 -88475715 + AluJo SINE Alu 5 300 -2 352 315 50 87 chr13 13398100 13398398 -88474771 + HAL1 LINE L1 1016 1302 -1205 498 191 111 0 chr13 13398467 13398593 -88474576 - L1MB7 LINE L1 -12 6172 6033 857 107 0 8 chr13 13398601 13398722 -88474447 - FLAM_C SINE Alu -23 120 1 552 273 0 27 chr13 13400295 13400445 -88472724 - MIR SINE MIR -20 242 97 291 199 16 31 chr13 13400482 13400572 -88472597 - MLT1K LTR MaLR -30 579 498 217 267 67 29 chr13 13400865 13400970 -88472199 - MIR SINE MIR -138 124 16 * 346 262 0 0 chr13 13400969 13401053 -88472116 + MER5A DNA MER1_type 22 105 -84 656 256 79 0 chr13 13401341 13401505 -88471664 - MER5B DNA MER1_type 0 178 2 338 260 13 13 chr13 13401511 13401588 -88471581 + MER5B DNA MER1_type 101 177 -1 * 502 310 53 11 chr13 13401588 13401774 -88471395 - MIR SINE MIR -58 204 11 186 103 0 0 chr13 13402007 13402036 -88471133 + (CAG)n Simple_repeat Simple_repeat 2 30 0 288 279 200 21 chr13 13402925 13403065 -88470104 + MIR3 SINE MIR 23 187 -21 238 205 0 0 chr13 13403254 13403293 -88469876 - MIR SINE MIR -14 248 210 2890 264 113 21 chr13 13403316 13404752 -88468417 + L2 LINE L2 1762 3310 -3 2005 110 205 6 chr13 13404896 13405252 -88467917 + MSTA LTR MaLR 2 428 0 2336 180 21 2 chr13 13406805 13407227 -88465942 + MSTB1 LTR MaLR 1 430 -2 2381 70 0 0 chr13 13407352 13407651 -88465518 - AluY SINE Alu -12 299 1 21 0 0 0 chr13 13407836 13407857 -88465312 + AT_rich Low_complexity Low_complexity 1 21 0 1704 163 3 14 chr13 13407857 13408146 -88465023 - AluJo SINE Alu -26 286 1 267 326 202 5 chr13 13408644 13408837 -88464332 + MIR SINE MIR 22 252 -10 2168 112 0 10 chr13 13409636 13409950 -88463219 + AluSx SINE Alu 1 311 -1 731 187 8 0 chr13 13410163 13410428 -88462741 + AluSg/x SINE Alu 178 443 0 308 259 152 13 chr13 13410643 13410754 -88462415 - MIR SINE MIR -45 163 45 330 314 42 17 chr13 13411026 13411144 -88462025 + MIR SINE MIR 117 237 -25 1683 158 37 72 chr13 13412623 13413027 -88460142 + MLT1B LTR MaLR 1 390 0 1035 275 59 53 chr13 13413074 13413791 -88459378 - L2 LINE L2 0 3313 2534 906 259 50 4 chr13 13413791 13414030 -88459139 + MER46C DNA MER2_type 1 250 -88 3431 231 85 18 chr13 13414176 13415269 -88457900 + L1MB7 LINE L1 2945 4110 -2036 207 0 0 0 chr13 13415276 13415299 -88457870 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1173 140 0 0 chr13 13415301 13415487 -88457682 - L1 LINE L1 -851 5295 5110 * 4411 160 46 4 chr13 13415482 13416305 -88456864 + L1MB7 LINE L1 5258 6115 -69 635 238 290 3 chr13 13416317 13416603 -88456566 - L2 LINE L2 -824 2490 2123 521 244 174 40 chr13 13417430 13417729 -88455440 - MLT1J2 LTR MaLR 0 450 112 229 328 40 40 chr13 13417813 13417938 -88455231 + MIR SINE MIR 8 132 -130 368 298 136 35 chr13 13419161 13419292 -88453877 + MIR SINE MIR 31 190 -72 2450 196 13 9 chr13 13419292 13419756 -88453413 - MLT1C LTR MaLR -1 466 1 368 298 136 35 chr13 13419756 13419822 -88453347 + MIR SINE MIR 190 248 -14 180 0 0 0 chr13 13420004 13420024 -88453145 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2070 112 14 0 chr13 13420030 13420324 -88452845 - AluSx SINE Alu -14 298 1 621 211 113 56 chr13 13420347 13420560 -88452609 - MIR SINE MIR -27 235 11 1917 13 105 4 chr13 13420637 13420876 -88452293 + AluYa5 SINE Alu 49 311 0 315 273 87 40 chr13 13422245 13422395 -88450774 - MIR3 SINE MIR -46 162 6 229 214 35 28 chr13 13423481 13423553 -88449616 + MIR SINE MIR 58 148 -60 2519 39 3 0 chr13 13423729 13424037 -88449132 - AluY SINE Alu -2 309 1 493 270 26 0 chr13 13424753 13424868 -88448301 - MIR SINE MIR -61 201 84 351 254 0 0 chr13 13425957 13426024 -88447145 - MER2 DNA MER2_type 0 345 279 604 194 19 0 chr13 13426093 13426201 -88446968 - MER2 DNA MER2_type -226 119 10 2964 162 59 67 chr13 13426567 13427264 -88445905 - LTR8 LTR ERV1 0 691 1 235 313 0 0 chr13 13427387 13427451 -88445718 + L2 LINE L2 2997 3060 -253 2176 68 31 3 chr13 13427674 13427966 -88445203 - AluY SINE Alu -11 300 1 23 33 0 0 chr13 13428277 13428307 -88444862 + AT_rich Low_complexity Low_complexity 1 30 0 3254 177 77 22 chr13 13428907 13429596 -88443573 - LTR8A LTR ERV1 0 727 1 1038 113 0 13 chr13 13429999 13430150 -88443019 - LOR1a LTR ERV1 0 497 349 3973 103 13 14 chr13 13430155 13430589 -88442580 + MER41A LTR ERV1 1 435 -119 1996 68 23 0 chr13 13430589 13430852 -88442317 - AluY SINE Alu -10 301 33 3973 103 13 14 chr13 13430852 13430972 -88442197 + MER41A LTR ERV1 435 554 0 412 105 13 66 chr13 13430972 13431048 -88442121 + MER41A-int LTR ERV1 1 72 -5874 2053 123 3 0 chr13 13431240 13431541 -88441628 - AluSx SINE Alu -10 302 1 1766 135 8 0 chr13 13432500 13432767 -88440402 + AluSq SINE Alu 1 269 -44 1889 148 0 16 chr13 13434396 13434700 -88438469 + AluJb SINE Alu 3 301 -11 501 254 27 0 chr13 13434772 13434882 -88438287 + L2 LINE L2 3189 3301 -12 417 338 42 7 chr13 13434880 13435022 -88438147 - L2 LINE L2 -5 3308 3162 * 248 282 129 45 chr13 13435108 13435310 -88437859 - L2 LINE L2 -1 3312 3094 1463 184 19 8 chr13 13435479 13435745 -88437424 - MLT1A2 LTR MaLR -105 269 1 2074 122 0 0 chr13 13436172 13436468 -88436701 - AluSq SINE Alu -17 296 1 216 97 0 0 chr13 13437571 13437602 -88435567 + (T)n Simple_repeat Simple_repeat 1 31 0 341 242 15 0 chr13 13437651 13437717 -88435452 - L2 LINE L2 0 3272 3206 2006 115 18 0 chr13 13438505 13438791 -88434378 + AluSx SINE Alu 1 291 -21 192 265 48 72 chr13 13438806 13438889 -88434280 - L2 LINE L2 -1865 1449 1369 476 270 38 25 chr13 13439471 13439630 -88433539 - MIR SINE MIR 0 262 102 237 299 103 17 chr13 13439739 13439856 -88433313 - MIR SINE MIR -75 187 61 414 252 53 30 chr13 13440167 13440298 -88432871 + MIR SINE MIR 17 150 -112 300 266 37 46 chr13 13440358 13440467 -88432702 + L2 LINE L2 3204 3311 -2 745 254 49 15 chr13 13440536 13440741 -88432428 - MLT1A2 LTR MaLR 0 374 163 259 305 93 25 chr13 13441039 13441157 -88432012 - L2 LINE L2 -5 3267 3142 294 278 14 0 chr13 13441524 13441596 -88431573 + MIR SINE MIR 81 153 -109 200 305 43 14 chr13 13442599 13442740 -88430429 - MIR3 SINE MIR -7 201 57 873 295 67 14 chr13 13444194 13444624 -88428545 + L1ME4a LINE L1 5479 5931 -190 21 57 0 0 chr13 13444787 13444822 -88428347 + AT_rich Low_complexity Low_complexity 1 35 0 227 31 31 0 chr13 13445008 13445040 -88428129 + (CA)n Simple_repeat Simple_repeat 2 34 0 1532 208 23 26 chr13 13446514 13446861 -88426308 - MLT1A2 LTR MaLR -4 370 25 193 222 0 25 chr13 13448722 13448803 -88424366 + GA-rich Low_complexity Low_complexity 4 82 0 267 309 0 0 chr13 13449197 13449252 -88423917 + L3 LINE CR1 1508 1562 -15 * 274 212 15 15 chr13 13449203 13449269 -88423900 + MIR3 SINE MIR 140 205 -3 276 241 0 0 chr13 13450246 13450300 -88422869 + Tigger3(Golem) DNA MER2_type 2947 3000 -29 21 0 0 0 chr13 13450702 13450723 -88422446 + AT_rich Low_complexity Low_complexity 1 21 0 498 221 44 22 chr13 13451218 13451354 -88421815 - MIR SINE MIR -75 187 49 275 271 206 42 chr13 13451969 13452183 -88420986 - L2 LINE L2 -47 3225 2977 1511 139 60 4 chr13 13452183 13452449 -88420720 + L1MB3 LINE L1 5808 6088 -95 1735 153 0 4 chr13 13452571 13452839 -88420330 - AluSg SINE Alu -43 267 1 568 244 158 24 chr13 13453830 13454039 -88419130 - MIR SINE MIR -18 244 8 337 220 84 21 chr13 13454178 13454310 -88418859 - MIR SINE MIR -36 226 82 887 278 80 49 chr13 13454530 13454980 -88418189 + MER115 DNA AcHobo 114 577 -116 226 291 76 48 chr13 13455065 13455316 -88417853 - MLT1K LTR MaLR -148 440 183 634 167 7 7 chr13 13455524 13455662 -88417507 + CT-rich Low_complexity Low_complexity 4 141 0 217 274 126 0 chr13 13455713 13455808 -88417361 + MIR SINE MIR 42 148 -60 509 246 87 0 chr13 13456429 13456567 -88416602 + MER103 DNA DNA 2 151 -15 255 290 97 39 chr13 13456726 13456881 -88416288 - MIR SINE MIR -39 223 60 220 33 0 0 chr13 13456908 13456938 -88416231 - MIR SINE MIR -126 136 107 1606 191 118 27 chr13 13458353 13458792 -88414377 + MLT1D LTR MaLR 9 373 -1 283 316 91 74 chr13 13458859 13459156 -88414013 - L2 LINE L2 0 3272 2971 225 65 0 0 chr13 13459177 13459208 -88413961 + (TG)n Simple_repeat Simple_repeat 1 31 0 2748 95 0 8 chr13 13459951 13460318 -88412851 + THE1B LTR MaLR 1 364 0 303 278 62 21 chr13 13460925 13461022 -88412147 - L2 LINE L2 -4 3309 3209 258 271 218 24 chr13 13462859 13463029 -88410140 + L1MC4 LINE L1 7637 7839 -203 360 339 144 10 chr13 13463626 13463821 -88409348 - MIR SINE MIR -13 249 29 710 212 73 20 chr13 13464480 13464631 -88408538 + MER5B DNA MER1_type 17 175 -3 1932 107 9 63 chr13 13464801 13465120 -88408049 + AluSx SINE Alu 1 302 -10 24 32 0 0 chr13 13465167 13465198 -88407971 + AT_rich Low_complexity Low_complexity 1 31 0 258 244 13 64 chr13 13465543 13465621 -88407548 + MIR SINE MIR 118 191 -71 994 147 32 0 chr13 13465737 13465893 -88407276 + MER20 DNA MER1_type 57 217 -2 878 142 0 8 chr13 13467739 13467873 -88405296 + FLAM_C SINE Alu 1 133 0 255 231 33 11 chr13 13468390 13468481 -88404688 + (CCG)n Simple_repeat Simple_repeat 3 95 0 25 31 0 0 chr13 13469048 13469080 -88404089 + AT_rich Low_complexity Low_complexity 1 32 0 195 276 35 35 chr13 13469399 13469457 -88403712 - L2 LINE L2 -19 3294 3237 304 301 93 98 chr13 13470857 13471245 -88401924 - L2 LINE L2 -1 3271 2886 1998 133 0 0 chr13 13471908 13472201 -88400968 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr13 13472201 13472223 -88400946 + (TA)n Simple_repeat Simple_repeat 2 23 0 293 224 47 129 chr13 13473483 13473536 -88399633 - MIR SINE MIR -6 256 200 2407 4 0 0 chr13 13473536 13473803 -88399366 - AluYa5 SINE Alu -6 305 39 293 224 47 129 chr13 13473803 13473919 -88399250 - MIR SINE MIR -62 200 101 258 302 195 44 chr13 13474205 13474364 -88398805 - MIR SINE MIR 0 262 80 3165 203 77 16 chr13 13474368 13475117 -88398052 + Charlie1a DNA MER1_type 29 823 -632 1746 138 91 13 chr13 13475115 13475498 -88397671 + Charlie1a DNA MER1_type 1041 1453 -2 * 369 267 78 89 chr13 13475712 13475993 -88397176 - MLT1I LTR MaLR -12 397 120 3943 86 40 100 chr13 13476045 13476718 -88396451 - MER51A LTR ERV1 -1 633 1 206 257 86 43 chr13 13476793 13476863 -88396306 - L2 LINE L2 -44 3228 3156 282 376 138 18 chr13 13478005 13478555 -88394614 - L2 LINE L2 -477 2837 2222 2866 212 61 56 chr13 13478710 13479122 -88394047 - MER21B LTR ERV1 -124 739 320 1882 141 0 16 chr13 13479122 13479428 -88393741 - AluSq SINE Alu -6 307 7 2866 212 61 56 chr13 13479428 13479750 -88393419 - MER21B LTR ERV1 -543 320 1 648 257 123 11 chr13 13479863 13480050 -88393119 + LTR67 LTR ERVL 4 211 -346 466 209 120 100 chr13 13480076 13480335 -88392834 + LTR67 LTR ERVL 282 545 -12 2275 85 0 19 chr13 13480996 13481312 -88391857 - AluSg SINE Alu 0 310 1 1912 116 29 0 chr13 13481900 13482207 -88390962 - AluSx SINE Alu 0 315 1 576 304 19 5 chr13 13483780 13484038 -88389131 - MLT1I LTR MaLR -27 382 85 604 294 165 3 chr13 13484224 13484540 -88388629 - MLT1I LTR MaLR -14 395 29 1328 165 11 26 chr13 13484569 13484842 -88388327 - AluJb SINE Alu -24 288 20 4105 113 118 112 chr13 13484843 13486218 -88386951 + pTR5 LTR ERV1 79 2438 0 249 88 0 0 chr13 13486218 13486252 -88386917 - AluJb SINE Alu -268 34 1 468 244 67 0 chr13 13486769 13486868 -88386301 - ORSL DNA AcHobo 0 275 165 2183 115 3 0 chr13 13486868 13487164 -88386005 + AluSp SINE Alu 1 297 -16 468 244 67 0 chr13 13487164 13487183 -88385986 - ORSL DNA AcHobo -110 165 149 1911 116 9 104 chr13 13487183 13487377 -88385792 - AluSx SINE Alu -6 296 144 2296 90 0 0 chr13 13487377 13487665 -88385504 - AluSx SINE Alu -24 288 1 1911 116 9 104 chr13 13487665 13487797 -88385372 - AluSx SINE Alu -158 144 1 257 294 0 15 chr13 13488292 13488360 -88384809 - ORSL DNA AcHobo 0 275 209 2452 75 10 0 chr13 13488392 13488697 -88384472 + AluY SINE Alu 1 308 -3 846 263 134 15 chr13 13488708 13489043 -88384126 - MER57B LTR ERV1 -4 430 56 948 168 80 58 chr13 13489605 13489702 -88383467 + MER33 DNA MER1_type 41 134 -2451 1817 126 14 18 chr13 13489702 13489980 -88383189 + AluSx SINE Alu 1 277 -35 342 0 0 0 chr13 13489986 13490024 -88383145 + (TA)n Simple_repeat Simple_repeat 1 38 0 948 168 80 58 chr13 13490024 13490193 -88382976 + MER33 DNA MER1_type 138 320 -4 897 133 6 3 chr13 13490217 13490374 -88382795 - LTR12 LTR ERV1 0 714 368 4711 111 49 35 chr13 13490374 13491051 -88382118 - LTR12 LTR ERV1 -2 686 1 786 288 89 41 chr13 13491054 13491514 -88381655 + L2 LINE L2 2722 3203 -110 2136 153 110 5 chr13 13491514 13491905 -88381264 - MSTB1 LTR MaLR 0 432 1 786 288 89 41 chr13 13491905 13492022 -88381147 + L2 LINE L2 3203 3313 0 2306 82 0 26 chr13 13492992 13493298 -88379871 - AluY SINE Alu -13 298 1 484 273 76 29 chr13 13493536 13493708 -88379461 + MIR SINE MIR 60 239 -23 687 244 78 116 chr13 13493899 13493918 -88379251 + MLT1K LTR MaLR 308 326 -262 2234 105 10 0 chr13 13493918 13494212 -88378957 - AluSx SINE Alu -15 297 1 687 244 78 116 chr13 13494212 13494512 -88378657 + MLT1K LTR MaLR 326 588 0 233 184 0 0 chr13 13494969 13495007 -88378162 + L1 LINE L1 4113 4150 -1996 377 297 36 10 chr13 13495831 13495974 -88377195 - MIR SINE MIR -65 143 2 270 268 118 77 chr13 13496666 13496774 -88376395 - MIR SINE MIR 0 262 160 2507 63 3 0 chr13 13496774 13497076 -88376093 - AluSq SINE Alu -10 303 1 270 268 118 77 chr13 13497076 13497187 -88375982 - MIR SINE MIR -102 160 34 251 281 73 0 chr13 13497294 13497376 -88375793 + L2 LINE L2 3160 3247 -25 2223 160 104 18 chr13 13497587 13498078 -88375091 - MER51A LTR ERV1 0 634 90 2127 111 37 3 chr13 13498573 13498907 -88374262 + AluSc SINE Alu 1 344 0 182 180 40 0 chr13 13498986 13499036 -88374133 + GA-rich Low_complexity Low_complexity 2 53 0 2415 94 0 0 chr13 13499349 13499648 -88373521 - AluSc SINE Alu -5 304 6 2199 116 0 3 chr13 13501544 13501845 -88371324 + AluSg SINE Alu 1 300 -10 689 165 36 173 chr13 13502177 13502425 -88370744 + MER20 DNA MER1_type 6 219 0 242 273 211 25 chr13 13502463 13502567 -88370602 - L2 LINE L2 0 3313 3230 288 0 0 0 chr13 13502567 13502599 -88370570 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 273 211 25 chr13 13502599 13502736 -88370433 - L2 LINE L2 -83 3230 3027 333 240 48 40 chr13 13502737 13502862 -88370307 - MLT1L LTR MaLR -14 601 476 423 272 23 46 chr13 13503069 13503242 -88369927 - MLT1K LTR MaLR -340 248 80 206 219 76 129 chr13 13503251 13503461 -88369708 - L2 LINE L2 -253 3060 2862 28 48 0 0 chr13 13504322 13504364 -88368805 + AT_rich Low_complexity Low_complexity 1 42 0 558 234 0 0 chr13 13504389 13504496 -88368673 - FLAM_A SINE Alu -35 107 1 990 175 0 0 chr13 13504505 13504665 -88368504 - FRAM SINE Alu -16 160 1 291 231 130 28 chr13 13504881 13504989 -88368180 - MIR SINE MIR -60 202 84 348 278 0 37 chr13 13505063 13505171 -88367998 - MIR SINE MIR -140 122 19 317 203 139 0 chr13 13505482 13505561 -88367608 - MIR SINE MIR -83 179 90 2404 89 7 0 chr13 13510249 13510552 -88362617 - AluSg SINE Alu -5 305 1 675 228 100 58 chr13 13510766 13511077 -88362092 + MER33 DNA MER1_type 1 324 0 1107 153 0 0 chr13 13512244 13512407 -88360762 - AluSp SINE Alu -16 297 135 2568 47 0 0 chr13 13512418 13512714 -88360455 - AluY SINE Alu -15 296 1 229 247 45 0 chr13 13513853 13513942 -88359227 + CT-rich Low_complexity Low_complexity 1 93 0 737 177 9 0 chr13 13518239 13518352 -88354817 + FRAM SINE Alu 6 119 -57 189 0 0 0 chr13 13519499 13519520 -88353649 + (A)n Simple_repeat Simple_repeat 1 21 0 314 222 244 22 chr13 13522026 13522116 -88351053 - MIR SINE MIR -141 121 12 1635 132 24 68 chr13 13522635 13522930 -88350239 - AluJo SINE Alu -30 282 1 215 198 221 58 chr13 13524928 13525014 -88348155 + MIR SINE MIR 32 131 -77 315 71 0 0 chr13 13525428 13525470 -88347699 + (TG)n Simple_repeat Simple_repeat 1 42 0 26 64 0 0 chr13 13528310 13528357 -88344812 + AT_rich Low_complexity Low_complexity 1 47 0 495 283 111 25 chr13 13529047 13529245 -88343924 - L2 LINE L2 0 3313 3099 406 274 149 6 chr13 13529372 13529540 -88343629 + MIR SINE MIR 40 231 -31 291 273 129 22 chr13 13530760 13530899 -88342270 - L1ME4a LINE L1 0 6121 5968 285 184 75 20 chr13 13531026 13531120 -88342049 - L1ME4a LINE L1 -323 5798 5695 267 252 15 7 chr13 13531739 13531825 -88341344 + A-rich Low_complexity Low_complexity 1 86 0 22 80 0 0 chr13 13531899 13531949 -88341220 + GC_rich Low_complexity Low_complexity 1 50 0 24 96 0 0 chr13 13532181 13532254 -88340915 + GC_rich Low_complexity Low_complexity 1 73 0 220 282 141 28 chr13 13533960 13534102 -88339067 + MIR3 SINE MIR 37 194 -14 543 246 20 80 chr13 13534387 13534586 -88338583 + MLT1J LTR MaLR 241 427 -84 267 279 130 72 chr13 13535590 13535830 -88337339 - L2 LINE L2 -2 3311 3086 918 171 42 65 chr13 13535830 13536047 -88337122 + MER20 DNA MER1_type 4 215 -4 267 279 130 72 chr13 13536047 13536581 -88336588 - L2 LINE L2 -227 3086 2380 320 212 20 10 chr13 13536581 13536680 -88336489 - L1MB3 LINE L1 -3 6180 6081 267 279 130 72 chr13 13536680 13536864 -88336305 - L2 LINE L2 -933 2380 2208 641 197 0 95 chr13 13536880 13536911 -88336258 - FLAM_A SINE Alu -169 133 101 2127 131 0 7 chr13 13536911 13537209 -88335960 + AluSx SINE Alu 1 296 -16 641 197 0 95 chr13 13537209 13537324 -88335845 - FLAM_A SINE Alu -201 101 1 204 40 0 0 chr13 13537489 13537514 -88335655 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 421 229 39 120 chr13 13537843 13538011 -88335158 - MER5A DNA MER1_type 0 189 1 2016 81 57 50 chr13 13538097 13538394 -88334775 + AluSg SINE Alu 3 301 -9 414 242 288 0 chr13 13539557 13539710 -88333459 - MIR SINE MIR -26 236 40 1451 165 66 53 chr13 13542376 13542679 -88330490 - AluJo SINE Alu -5 307 1 2155 114 7 7 chr13 13542749 13543047 -88330122 + AluSx SINE Alu 1 298 -14 1464 182 40 47 chr13 13543746 13543904 -88329265 - AluJo SINE Alu -16 296 139 2396 95 0 0 chr13 13543904 13544209 -88328960 - AluSg SINE Alu -5 305 1 1464 182 40 47 chr13 13544209 13544346 -88328823 - AluJo SINE Alu -173 139 3 294 143 0 0 chr13 13544655 13544704 -88328465 + (TG)n Simple_repeat Simple_repeat 2 50 0 278 241 60 24 chr13 13544854 13544937 -88328232 - L2 LINE L2 0 3272 3187 1806 168 10 0 chr13 13544949 13545241 -88327928 + AluJb SINE Alu 6 300 -12 475 250 64 29 chr13 13545388 13545560 -88327609 - L2 LINE L2 -94 3219 3042 2331 100 0 0 chr13 13547146 13547446 -88325723 - AluSx SINE Alu -12 300 1 288 303 57 0 chr13 13547988 13548110 -88325059 - MIR SINE MIR -50 212 84 333 111 0 0 chr13 13548115 13548169 -88325000 - L1PA15 LINE L1 0 6165 6112 7577 171 39 10 chr13 13548175 13549920 -88323249 - L1PA15 LINE L1 -2 6163 4354 2197 117 13 0 chr13 13549920 13550218 -88322951 - AluSq SINE Alu -11 302 1 7577 171 39 10 chr13 13550218 13550706 -88322463 - L1PA15 LINE L1 -1811 4354 3882 1929 183 14 3 chr13 13550706 13551061 -88322108 + L1PA15 LINE L1 3513 3871 -2275 624 224 141 5 chr13 13551263 13551455 -88321714 + MIR SINE MIR 9 226 -36 348 244 84 25 chr13 13551648 13551767 -88321402 - MIR SINE MIR -8 254 129 546 312 10 25 chr13 13552680 13552879 -88320290 + MIR3 SINE MIR 10 205 -3 2237 110 3 0 chr13 13553721 13554022 -88319147 - AluSg SINE Alu -8 302 1 185 239 22 76 chr13 13554274 13554366 -88318803 - MIR3 SINE MIR -37 171 85 333 290 113 21 chr13 13555997 13556183 -88316986 + L3 LINE CR1 768 970 -607 201 94 0 0 chr13 13556363 13556395 -88316774 + (TG)n Simple_repeat Simple_repeat 1 32 0 219 208 0 62 chr13 13556536 13556584 -88316585 + L2 LINE L2 3210 3254 -18 329 278 158 64 chr13 13557751 13557985 -88315184 + L2 LINE L2 3017 3272 0 880 183 0 0 chr13 13558249 13558380 -88314789 - FLAM_A SINE Alu -2 131 1 538 253 156 18 chr13 13558644 13558975 -88314194 - L1ME3A LINE L1 -165 5956 5588 202 185 0 37 chr13 13559385 13559439 -88313730 + A-rich Low_complexity Low_complexity 5 56 0 2023 137 34 94 chr13 13560023 13560438 -88312731 - MLT1B LTR MaLR 0 390 1 2190 114 0 10 chr13 13561111 13561417 -88311752 + AluSx SINE Alu 1 303 -9 33 0 0 0 chr13 13561477 13561510 -88311659 + AT_rich Low_complexity Low_complexity 1 33 0 198 97 0 0 chr13 13562363 13562375 -88310794 + (T)n Simple_repeat Simple_repeat 1 12 -19 2347 102 0 0 chr13 13562375 13562668 -88310501 + AluSc SINE Alu 1 293 -16 198 97 0 0 chr13 13562668 13562686 -88310483 + (T)n Simple_repeat Simple_repeat 11 31 0 2550 139 65 7 chr13 13563870 13564273 -88308896 - MSTA LTR MaLR -2 426 1 461 307 64 23 chr13 13565238 13565456 -88307713 - MLT1J LTR MaLR -282 229 3 2484 77 0 10 chr13 13565654 13565966 -88307203 - AluY SINE Alu -2 309 1 242 268 111 63 chr13 13566819 13567009 -88306160 - L2 LINE L2 -904 2410 2212 1319 194 88 25 chr13 13567323 13567642 -88305527 - L1MB2 LINE L1 -1 6170 5832 2119 112 3 0 chr13 13568491 13568785 -88304384 + AluSx SINE Alu 1 295 -17 2174 114 0 3 chr13 13569000 13569297 -88303872 - AluSq SINE Alu -13 300 5 815 149 0 0 chr13 13570322 13570436 -88302733 + FLAM_A SINE Alu 16 129 -13 195 42 0 0 chr13 13572114 13572138 -88301031 + (T)n Simple_repeat Simple_repeat 1 24 0 225 175 0 0 chr13 13572504 13572544 -88300625 - L2 LINE L2 -3 3310 3271 197 337 74 32 chr13 13573287 13573382 -88299787 - L2 LINE L2 -191 3081 2983 384 246 120 7 chr13 13573617 13573759 -88299410 - MIR SINE MIR -1 261 104 600 269 41 0 chr13 13573926 13574097 -88299072 + L2 LINE L2 3120 3297 -16 378 325 179 5 chr13 13574114 13574326 -88298843 - MIR SINE MIR -10 252 4 2368 96 0 0 chr13 13575857 13576158 -88297011 + AluSq SINE Alu 1 301 -12 225 154 0 0 chr13 13576384 13576423 -88296746 + (TATATG)n Simple_repeat Simple_repeat 1 39 0 351 136 0 0 chr13 13578564 13578623 -88294546 + (T)n Simple_repeat Simple_repeat 1 59 0 1957 121 21 0 chr13 13578931 13579220 -88293949 - AluSc SINE Alu -14 295 1 407 342 70 56 chr13 13579971 13580328 -88292841 - L2 LINE L2 -15 3257 2896 317 256 111 22 chr13 13580391 13580481 -88292688 + L2 LINE L2 3169 3266 -6 22 80 0 0 chr13 13581654 13581704 -88291465 + AT_rich Low_complexity Low_complexity 1 50 0 1884 154 0 3 chr13 13581814 13582122 -88291047 - AluSx SINE Alu 0 307 1 31066 91 19 26 chr13 13582174 13584956 -88288213 + L1PA7 LINE L1 438 3237 -2917 2387 80 3 19 chr13 13584956 13585268 -88287901 + AluY SINE Alu 1 307 -4 31066 91 19 26 chr13 13585268 13586416 -88286753 + L1PA7 LINE L1 3237 4391 -1763 2000 107 48 7 chr13 13586416 13586706 -88286463 + AluSg SINE Alu 1 302 -8 31066 91 19 26 chr13 13586706 13588561 -88284608 + L1PA7 LINE L1 4391 6134 -20 1018 286 48 13 chr13 13589487 13589802 -88283367 - L2 LINE L2 -3 3310 2985 285 336 49 0 chr13 13589805 13589927 -88283242 + L2 LINE L2 2278 2405 -909 382 345 112 14 chr13 13590229 13590516 -88282653 + L2 LINE L2 2315 2629 -685 548 277 33 66 chr13 13590523 13590997 -88282172 - L1MDb LINE L1 -4611 1835 1190 437 323 101 74 chr13 13591030 13591857 -88281312 - L1MDb LINE L1 -5130 1286 457 425 52 0 0 chr13 13591857 13591915 -88281254 - L1PA4 LINE L1 -3 6152 6095 437 323 101 74 chr13 13591915 13592028 -88281141 - L1MDb LINE L1 -5959 457 348 233 284 60 0 chr13 13592134 13592201 -88280968 + L2 LINE L2 2870 2940 -332 206 265 0 0 chr13 13592514 13592563 -88280606 + L2 LINE L2 3265 3313 0 249 305 72 34 chr13 13593241 13593360 -88279809 + MIR SINE MIR 35 157 -51 276 313 14 28 chr13 13594214 13594358 -88278811 + LTR67 LTR ERVL 410 551 -6 1842 158 58 11 chr13 13595912 13596259 -88276910 - MLT1A1 LTR MaLR -2 363 1 294 289 171 0 chr13 13596839 13596991 -88276178 - MLT1L LTR MaLR 0 615 438 2136 58 6 95 chr13 13598022 13598347 -88274822 - AluY SINE Alu -15 296 1 2288 106 0 0 chr13 13598786 13599079 -88274090 - AluSx SINE Alu -8 304 12 1343 192 60 36 chr13 13599863 13600165 -88273004 - AluJo SINE Alu -3 309 1 1784 179 20 11 chr13 13601645 13601996 -88271173 + MLT1A1 LTR MaLR 11 364 -1 1872 152 53 52 chr13 13602595 13603045 -88270124 - MER61C LTR ERV1 0 434 1 488 281 30 10 chr13 13603063 13603266 -88269903 - L1ME3A LINE L1 -310 5860 5654 246 197 14 42 chr13 13603271 13603342 -88269827 + MER112 DNA MER1_type 1 69 -191 356 292 115 24 chr13 13603621 13603960 -88269209 - L1MEc LINE L1 -3646 2894 2525 2239 109 0 10 chr13 13603999 13604310 -88268859 - AluSg1 SINE Alu -1 308 1 236 238 126 22 chr13 13604633 13604856 -88268313 - L1MEc LINE L1 -4441 2099 1854 2334 102 0 16 chr13 13604873 13605188 -88267981 - AluSg SINE Alu 0 310 1 318 295 108 38 chr13 13605240 13605640 -88267529 - L1MEc LINE L1 -5238 1292 865 2787 127 7 0 chr13 13606508 13606949 -88266220 - L1PA16 LINE L1 -20 6146 5703 452 287 84 7 chr13 13607025 13607168 -88266001 - MIR SINE MIR -84 178 25 231 36 0 0 chr13 13607579 13607607 -88265562 + (CA)n Simple_repeat Simple_repeat 2 29 0 192 156 0 0 chr13 13608144 13608176 -88264993 - MIR SINE MIR -5 257 226 22 0 0 0 chr13 13609491 13609513 -88263656 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 13609712 13609745 -88263424 + AT_rich Low_complexity Low_complexity 1 33 0 189 351 53 62 chr13 13610612 13610820 -88262349 - MIR SINE MIR -56 206 1 6875 105 26 16 chr13 13611125 13612181 -88260988 - MER11C LTR ERVK -4 1067 1 2414 55 0 36 chr13 13614152 13614461 -88258708 + AluY SINE Alu 1 298 -13 376 280 93 9 chr13 13614681 13614788 -88258381 - L2 LINE L2 -6 3307 3192 29 28 0 0 chr13 13615316 13615352 -88257817 + AT_rich Low_complexity Low_complexity 1 36 0 1296 136 0 15 chr13 13617060 13617266 -88255903 + L1PB4 LINE L1 5953 6155 -1 234 0 0 0 chr13 13617398 13617424 -88255745 + (A)n Simple_repeat Simple_repeat 1 26 0 291 250 18 134 chr13 13617957 13618069 -88255100 + L2 LINE L2 3174 3272 0 419 326 14 7 chr13 13618208 13618346 -88254823 + MIR3 SINE MIR 46 184 -24 3363 259 83 18 chr13 13618688 13619953 -88253216 + L1MEc LINE L1 45 1391 -5005 5555 223 30 23 chr13 13620021 13621520 -88251649 + L1M2 LINE L1 1067 2575 -4274 443 193 0 0 chr13 13621521 13621609 -88251560 + L1PA15-16 LINE L1 2817 2904 -3945 29306 105 18 57 chr13 13621652 13628052 -88245117 - L1PA7 LINE L1 0 6154 12 180 0 0 0 chr13 13628064 13628084 -88245085 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1166 193 30 37 chr13 13628089 13628389 -88244780 - MLT1A1 LTR MaLR -67 298 1 2426 139 2 27 chr13 13628540 13628979 -88244190 - L1MB2 LINE L1 0 6171 5744 1050 131 98 65 chr13 13628993 13629238 -88243931 - L1MB2 LINE L1 -528 5655 5403 3385 184 90 28 chr13 13629268 13630056 -88243113 - MER21B LTR ERV1 -26 837 1 10449 165 34 18 chr13 13630135 13632140 -88241029 - MER21A-int LTR ERV1 -57 4134 2097 2202 186 45 97 chr13 13632145 13632877 -88240292 - LTR8A LTR ERV1 0 727 34 5491 217 21 17 chr13 13632893 13634097 -88239072 - MER21A-int LTR ERV1 -2096 2095 887 34720 29 17 1 chr13 13634098 13640127 -88233042 + L1HS LINE L1 2 6155 0 5003 184 38 6 chr13 13640152 13641019 -88232150 - MER21A-int LTR ERV1 -3296 895 1 3885 189 65 13 chr13 13641019 13641763 -88231406 - MER21A LTR ERV1 0 931 150 815 209 75 78 chr13 13641766 13642487 -88230682 + MER52A LTR ERV1 1 751 -269 413 264 296 46 chr13 13642498 13642869 -88230300 + MER52A LTR ERV1 1292 1755 0 743 99 21 71 chr13 13642870 13643011 -88230158 - MER21A LTR ERV1 -785 146 13 4522 123 45 0 chr13 13643450 13644131 -88229038 - LTR62 LTR ERVK -4 715 4 10850 99 9 20 chr13 13645056 13646564 -88226605 + THE1A-int LTR MaLR 90 1580 0 2564 109 3 8 chr13 13646564 13646921 -88226248 + THE1A LTR MaLR 1 355 0 8772 111 26 83 chr13 13646922 13648189 -88224980 + THE1A-int LTR MaLR 2 1340 -240 216 0 0 0 chr13 13648189 13648213 -88224956 + (TA)n Simple_repeat Simple_repeat 1 24 0 617 67 0 0 chr13 13648215 13648290 -88224879 - AluSp/q SINE Alu -18 295 221 8772 111 26 83 chr13 13648290 13648471 -88224698 + THE1A-int LTR MaLR 1341 1439 -141 25 0 0 0 chr13 13649187 13649212 -88223957 + AT_rich Low_complexity Low_complexity 1 25 0 204 296 0 0 chr13 13650081 13650135 -88223034 - L2 LINE L2 -4 3309 3256 234 245 0 0 chr13 13650919 13650972 -88222197 - MER117 DNA MER1_type -8 189 137 776 328 133 25 chr13 13651184 13651986 -88221183 + L2 LINE L2 1870 2758 -556 719 182 8 143 chr13 13653164 13653422 -88219747 - MER112 DNA MER1_type -36 224 2 1654 123 25 0 chr13 13653627 13653871 -88219298 - L1PB1 LINE L1 0 6151 5902 354 257 40 46 chr13 13655276 13655451 -88217718 - LTR33A LTR ERVL -18 505 332 233 0 62 0 chr13 13656496 13656528 -88216641 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1504 164 0 9 chr13 13656557 13656789 -88216380 - AluJo SINE Alu -82 230 1 262 266 83 18 chr13 13657837 13657946 -88215223 + L1MB8 LINE L1 6061 6176 -2 2326 98 7 0 chr13 13658058 13658363 -88214806 - AluY SINE Alu -4 307 1 3038 172 13 7 chr13 13658819 13659366 -88213803 - MER44D DNA MER2_type 0 605 1 184 336 0 58 chr13 13659864 13659968 -88213201 + MIR SINE MIR 95 192 -70 2291 108 7 3 chr13 13660194 13660500 -88212669 + AluSx SINE Alu 1 307 -5 2134 205 101 137 chr13 13664021 13665652 -88207517 + L1ME3 LINE L1 3465 5033 -1113 898 192 101 0 chr13 13665652 13665850 -88207319 + MER20 DNA MER1_type 1 218 -1 2134 205 101 137 chr13 13665850 13665927 -88207242 + L1ME3 LINE L1 5033 5111 -1035 718 206 8 0 chr13 13665942 13666068 -88207101 + FLAM_C SINE Alu 7 133 -10 1338 225 134 52 chr13 13666069 13666199 -88206970 + L1ME3 LINE L1 5107 5225 -937 2018 223 94 18 chr13 13666199 13666750 -88206419 + MLT1E LTR MaLR 1 593 0 1338 225 134 52 chr13 13666750 13667085 -88206084 + L1ME3 LINE L1 5225 5531 -631 906 198 127 0 chr13 13667085 13667282 -88205887 + MER58A DNA MER1_type 1 222 -2 1338 225 134 52 chr13 13667282 13667614 -88205555 + L1ME3 LINE L1 5531 5976 -186 7923 122 13 21 chr13 13668415 13669704 -88203465 + L1PA10 LINE L1 4103 5381 -765 1384 96 15 10 chr13 13669704 13669898 -88203271 + L1PA10 LINE L1 5957 6154 -14 1512 121 49 0 chr13 13670325 13670549 -88202620 - LTR12 LTR ERV1 0 714 480 392 194 31 20 chr13 13670550 13670648 -88202521 - LTR30 LTR ERV1 -80 642 544 6851 133 29 87 chr13 13670648 13672012 -88201157 - pTR5 LTR ERV1 -413 2025 741 878 145 25 31 chr13 13672162 13672321 -88200848 + MER61A LTR ERV1 186 343 0 41487 45 38 0 chr13 13672369 13678295 -88194874 + L1PA4 LINE L1 1 6155 0 2477 118 32 52 chr13 13678985 13679391 -88193778 + MER48 LTR ERV1 1 398 0 408 278 198 22 chr13 13679690 13679960 -88193209 - L1MC4 LINE L1 -850 7042 6678 456 267 76 83 chr13 13680001 13680284 -88192885 + L1MC5 LINE L1 7302 7585 -376 2398 93 0 0 chr13 13680284 13680575 -88192594 + AluSc SINE Alu 1 291 -18 456 267 76 83 chr13 13680575 13680849 -88192320 + L1MC5 LINE L1 7585 7857 -104 2254 176 39 10 chr13 13680849 13681264 -88191905 - LTR3 LTR ERVK 0 429 3 456 267 76 83 chr13 13681264 13681320 -88191849 + L1MC5 LINE L1 7857 7912 -49 222 289 203 41 chr13 13681414 13681808 -88191361 + L2 LINE L2 2384 2841 -473 757 249 31 35 chr13 13682061 13682290 -88190879 + MIR SINE MIR 34 261 -1 207 261 206 0 chr13 13682343 13682435 -88190734 - MIR SINE MIR -9 253 143 278 274 0 32 chr13 13682533 13682628 -88190541 - MIR SINE MIR -113 149 58 205 294 59 0 chr13 13682694 13682762 -88190407 + L2 LINE L2 3201 3272 0 196 103 0 0 chr13 13683519 13683548 -88189621 + L2 LINE L2 3243 3271 -1 886 125 0 0 chr13 13684859 13684979 -88188190 + LTR1 LTR ERV1 666 785 0 354 125 0 0 chr13 13686325 13686373 -88186796 + THE1A LTR MaLR 308 355 0 7900 171 163 3 chr13 13686373 13687735 -88185434 + THE1B-int LTR MaLR 1 1580 0 2358 99 48 14 chr13 13687735 13688087 -88185082 + THE1B LTR MaLR 1 364 0 469 252 8 25 chr13 13689667 13689786 -88183383 - MIR SINE MIR -5 257 141 1706 171 42 10 chr13 13689786 13690096 -88183073 + MSTA LTR MaLR 109 428 0 642 353 63 36 chr13 13690096 13690652 -88182517 + PRIMA41-int LTR ERV1 1137 1707 -5415 5040 122 34 1 chr13 13691064 13691825 -88181344 - L1PB3 LINE L1 0 6154 5369 551 288 72 50 chr13 13691829 13692367 -88180802 + PRIMA41-int LTR ERV1 4431 5020 -2921 420 260 42 65 chr13 13692746 13692962 -88180207 + PRIMA41-int LTR ERV1 5356 5570 -2186 3887 102 24 33 chr13 13692996 13693577 -88179592 + PRIMA41-int LTR ERV1 7168 7743 -377 1971 120 14 4 chr13 13693686 13693962 -88179207 + AluSq SINE Alu 1 279 -34 212 0 0 35 chr13 13693967 13693996 -88179173 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 1208 87 0 17 chr13 13694221 13694393 -88178776 + PRIMA41-int LTR ERV1 7768 7936 -184 792 175 12 24 chr13 13694398 13694564 -88178605 + LOR1b LTR ERV1 298 461 0 246 310 58 39 chr13 13695499 13695654 -88177515 + MIR SINE MIR 20 177 -85 955 133 18 24 chr13 13696338 13696504 -88176665 + MER52C LTR ERV1 1 165 -1113 2534 131 187 20 chr13 13696604 13697091 -88176078 + MER52C LTR ERV1 711 1278 0 3587 126 53 11 chr13 13697091 13697638 -88175531 + MER52C-int LTR ERV1 2 571 -6520 6418 155 82 13 chr13 13697748 13699121 -88174048 + MER52C-int LTR ERV1 1698 3241 -3850 1346 120 10 14 chr13 13699109 13699317 -88173852 + MER52-int LTR ERV1 795 1001 -6090 * 430 291 54 85 chr13 13701151 13701505 -88171664 - L2 LINE L2 -358 2956 2614 1685 169 7 4 chr13 13702788 13703066 -88170103 - AluJo SINE Alu -31 281 3 32 0 0 0 chr13 13703649 13703681 -88169488 + AT_rich Low_complexity Low_complexity 1 32 0 2829 200 6 12 chr13 13706057 13706576 -88166593 - MER82 DNA MER2_type -136 517 2 645 252 69 3 chr13 13706579 13706782 -88166387 - L2 LINE L2 -2001 1313 1031 198 0 0 0 chr13 13706813 13706835 -88166334 + (TA)n Simple_repeat Simple_repeat 1 22 0 29 0 0 0 chr13 13706875 13706904 -88166265 + AT_rich Low_complexity Low_complexity 1 29 0 17701 31 11 0 chr13 13707136 13709260 -88163909 - L1P LINE L1 -1638 4508 2361 521 161 26 2 chr13 13709363 13709469 -88163700 - L1P2 LINE L1 -684 5471 5360 1001 188 56 28 chr13 13710509 13710722 -88162447 + AluJo SINE Alu 1 219 -93 2023 133 0 35 chr13 13710775 13711090 -88162079 - AluJb SINE Alu -8 304 1 430 204 19 56 chr13 13711193 13711301 -88161868 + MIR SINE MIR 9 112 -150 1410 119 9 5 chr13 13711360 13711579 -88161590 - LTR1 LTR ERV1 -565 220 1 1841 139 28 0 chr13 13711829 13712116 -88161053 + L1MA5A LINE L1 6000 6294 -3 5222 191 37 42 chr13 13712371 13712939 -88160230 - L1M4 LINE L1 -1091 5055 4486 1670 99 41 0 chr13 13712939 13713160 -88160009 - MER30 DNA MER1_type 0 230 1 5222 191 37 42 chr13 13713160 13713931 -88159238 - L1M4 LINE L1 -1660 4486 3723 293 282 0 0 chr13 13713923 13714008 -88159161 - L1M4 LINE L1 -3558 2588 2504 * 2334 92 3 0 chr13 13714009 13714304 -88158865 - AluSp SINE Alu -17 296 1 3825 102 25 7 chr13 13714455 13715003 -88158166 - LTR9B LTR ERV1 -86 558 1 4575 141 7 44 chr13 13715004 13715406 -88157763 - HUERS-P3b LTR ERV1 -7 7411 6995 2431 90 0 0 chr13 13715406 13715717 -88157452 - AluY SINE Alu 0 311 1 4575 141 7 44 chr13 13715717 13715729 -88157440 - HUERS-P3b LTR ERV1 -423 6995 6984 2350 68 0 29 chr13 13715729 13716036 -88157133 - AluY SINE Alu -12 299 2 4575 141 7 44 chr13 13716036 13716367 -88156802 - HUERS-P3b LTR ERV1 -434 6984 6693 10308 98 52 8 chr13 13716515 13718245 -88154924 - HUERS-P3b LTR ERV1 -698 6720 2154 369 256 43 37 chr13 13718249 13718413 -88154756 - L1M4 LINE L1 -3700 2446 2282 667 185 132 14 chr13 13718451 13718630 -88154539 + Tigger3(Golem) DNA MER2_type 1 2849 -180 * 7226 103 4 66 chr13 13718628 13719763 -88153406 - Charlie3 DNA MER1_type -4 2706 1642 2080 116 13 13 chr13 13719764 13720066 -88153103 - AluY SINE Alu -9 302 1 2045 114 0 21 chr13 13720066 13720354 -88152815 - AluSg SINE Alu -12 298 16 679 258 50 0 chr13 13721273 13721455 -88151714 + MIR SINE MIR 13 203 -59 1800 165 77 9 chr13 13721474 13721814 -88151355 + MLT2C1 LTR ERVL 35 397 0 323 148 19 0 chr13 13722408 13722462 -88150707 - MER116 DNA Mariner -25 55 1 564 261 48 18 chr13 13723089 13723254 -88149915 + MIR SINE MIR 12 181 -81 2006 125 0 29 chr13 13724203 13724515 -88148654 - AluSx SINE Alu -9 303 1 2375 86 3 16 chr13 13724528 13724841 -88148328 - AluSg SINE Alu -1 309 1 264 234 66 65 chr13 13725661 13725964 -88147205 - L1ME LINE L1 -714 5456 5152 * 335 248 68 26 chr13 13725957 13726074 -88147095 - L1MD2 LINE L1 -30 6329 6208 1659 114 8 4 chr13 13726076 13726312 -88146857 + AluSx SINE Alu 1 237 -75 812 50 0 40 chr13 13726314 13726451 -88146718 + AluSp/q SINE Alu 186 318 0 355 244 47 0 chr13 13726477 13726563 -88146606 - L1MD3 LINE L1 -140 7855 7766 21 0 0 0 chr13 13727180 13727201 -88145968 + AT_rich Low_complexity Low_complexity 1 21 0 778 137 217 6 chr13 13727479 13727640 -88145529 + L1PA16 LINE L1 5963 6157 -9 1972 146 9 22 chr13 13728877 13729192 -88143977 + AluJb SINE Alu 1 311 -1 361 350 35 30 chr13 13729502 13729702 -88143467 + L2 LINE L2 2552 2752 -562 7930 203 19 33 chr13 13729891 13731773 -88141396 + L1 LINE L1 2367 4222 -1924 244 154 0 0 chr13 13731873 13731936 -88141233 + AluSx SINE Alu 246 308 0 24 91 0 0 chr13 13732365 13732431 -88140738 + AT_rich Low_complexity Low_complexity 1 66 0 1823 181 35 6 chr13 13733349 13733692 -88139477 + L1MD2 LINE L1 5644 5996 -363 729 143 86 29 chr13 13733694 13733903 -88139266 + Charlie2 DNA MER1_type 2271 2491 -371 9606 98 79 1 chr13 13734339 13735768 -88137401 - Charlie3 DNA MER1_type -1070 1640 3 1317 148 15 0 chr13 13735769 13735965 -88137204 + Tigger3(Golem) DNA MER2_type 2840 3038 0 234 0 0 0 chr13 13735968 13735994 -88137175 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr13 13736201 13736222 -88136947 + (TA)n Simple_repeat Simple_repeat 2 22 0 7876 43 0 0 chr13 13736222 13737878 -88135291 - L1PA5 LINE L1 -7 6147 4490 287 200 133 19 chr13 13737878 13737983 -88135186 - L1MEc LINE L1 -4670 1726 1610 22 35 0 0 chr13 13737994 13738023 -88135146 + AT_rich Low_complexity Low_complexity 1 29 0 362 252 77 32 chr13 13738031 13738056 -88135113 - MIR SINE MIR -13 249 227 2515 168 31 17 chr13 13738056 13738478 -88134691 + MSTA LTR MaLR 1 428 0 362 252 77 32 chr13 13738478 13738607 -88134562 - MIR SINE MIR -35 227 88 763 150 0 0 chr13 13739012 13739132 -88134037 + AluSp/q SINE Alu 194 313 0 1021 193 0 0 chr13 13739258 13739424 -88133745 - AluJb SINE Alu -13 299 134 2067 84 66 0 chr13 13739424 13739697 -88133472 - AluSg SINE Alu -19 291 1 1431 171 56 45 chr13 13741332 13741689 -88131480 - MER47A DNA MER2_type -5 361 1 271 236 162 85 chr13 13743258 13743517 -88129652 + MLT1J LTR MaLR 1 279 -232 227 157 84 72 chr13 13743604 13743687 -88129482 + MLT1J LTR MaLR 382 465 -46 1984 153 6 40 chr13 13744147 13744493 -88128676 + MER1B DNA MER1_type 4 337 0 400 349 17 17 chr13 13744667 13744839 -88128330 - MIR SINE MIR -43 219 48 203 182 0 0 chr13 13745179 13745212 -88127957 + (CATA)n Simple_repeat Simple_repeat 4 36 0 276 265 0 0 chr13 13745263 13745346 -88127823 + L1MC4 LINE L1 6614 6696 -1346 258 56 0 0 chr13 13745354 13745390 -88127779 + (TA)n Simple_repeat Simple_repeat 1 36 0 187 329 41 0 chr13 13745498 13745571 -88127598 - MIR3 SINE MIR -6 202 127 2023 116 3 0 chr13 13745992 13746298 -88126871 + AluSx SINE Alu 1 307 0 844 233 47 0 chr13 13747914 13748086 -88125083 - MER5A DNA MER1_type -9 180 1 682 300 76 5 chr13 13749524 13749747 -88123422 + MIR SINE MIR 24 262 0 2494 109 43 0 chr13 13750239 13750586 -88122583 - THE1B LTR MaLR 0 364 3 396 333 25 25 chr13 13752785 13752947 -88120222 + L2 LINE L2 2910 3071 -201 2522 113 32 2 chr13 13753430 13753830 -88119339 + L1PA16 LINE L1 5746 6157 -9 31 26 0 0 chr13 13753830 13753868 -88119301 + AT_rich Low_complexity Low_complexity 1 38 0 253 215 329 0 chr13 13753868 13753947 -88119222 + MIR SINE MIR 112 216 -46 5806 215 37 14 chr13 13756023 13757730 -88115439 - L1 LINE L1 -2395 5170 3420 212 319 69 0 chr13 13757739 13757811 -88115358 + L2 LINE L2 3188 3264 -8 560 127 55 109 chr13 13758190 13758355 -88114814 + LTR37A LTR ERV1 3 158 -268 5543 111 82 19 chr13 13758355 13758417 -88114752 + MER51B-int LTR ERV1 2122 2179 -5637 2261 119 3 6 chr13 13758417 13758729 -88114440 + AluSx SINE Alu 1 311 -1 5543 111 82 19 chr13 13758729 13759743 -88113426 + MER51B-int LTR ERV1 2179 3265 -4551 1914 172 63 35 chr13 13759755 13760243 -88112926 + MER51B-int LTR ERV1 1476 1977 -3240 1019 77 115 2 chr13 13760222 13760483 -88112686 + MER51B-int LTR ERV1 2210 2544 -2673 * 33 0 0 0 chr13 13760506 13760539 -88112630 + AT_rich Low_complexity Low_complexity 1 33 0 9250 134 35 16 chr13 13760560 13760800 -88112369 + MER51B-int LTR ERV1 5617 5851 -1965 1875 116 11 14 chr13 13760800 13761085 -88112084 - AluSx SINE Alu 0 312 29 9250 134 35 16 chr13 13761085 13762409 -88110760 + MER51B-int LTR ERV1 5851 7421 -395 216 0 0 0 chr13 13762409 13762433 -88110736 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 9250 134 35 16 chr13 13762433 13762836 -88110333 + MER51B-int LTR ERV1 7421 7815 -1 2152 99 129 0 chr13 13762839 13763172 -88109997 + MER51B LTR ERV1 2 377 0 461 317 36 20 chr13 13763172 13763507 -88109662 - L1 LINE L1 -5600 1886 1405 461 189 252 0 chr13 13764506 13764633 -88108536 + MER5A DNA MER1_type 26 184 -5 435 257 146 10 chr13 13765819 13766025 -88107144 + MIR SINE MIR 11 244 -18 259 241 66 72 chr13 13766074 13766240 -88106929 - LTR16A1 LTR ERVL 0 457 293 2301 79 3 25 chr13 13766980 13767296 -88105873 - AluSc SINE Alu 0 309 1 24 32 0 0 chr13 13767817 13767848 -88105321 + AT_rich Low_complexity Low_complexity 1 31 0 486 211 23 8 chr13 13767924 13768057 -88105112 - L1ME LINE L1 -382 5780 5646 295 272 37 69 chr13 13768170 13768416 -88104753 - L1M4 LINE L1 -3569 2577 2340 575 284 47 87 chr13 13770008 13770329 -88102840 - L2 LINE L2 0 3313 3006 2315 236 32 0 chr13 13770347 13770940 -88102229 + L1MB8 LINE L1 5379 5990 -188 1987 117 3 60 chr13 13771331 13771647 -88101522 - AluSx SINE Alu -14 298 1 295 200 67 40 chr13 13772086 13772161 -88101008 - L2 LINE L2 -33 3280 3204 227 308 90 41 chr13 13772415 13772681 -88100488 + L2 LINE L2 2326 2604 -710 341 302 103 51 chr13 13772862 13773213 -88099956 + L2 LINE L2 2934 3302 -11 2089 134 109 13 chr13 13774698 13775094 -88098075 + Tigger2a DNA MER2_type 1 434 0 1397 206 7 31 chr13 13775265 13775442 -88097727 - AluJo SINE Alu 0 317 149 2298 102 0 0 chr13 13775442 13775737 -88097432 - AluSc SINE Alu -14 295 1 1397 206 7 31 chr13 13775737 13775883 -88097286 - AluJo SINE Alu -168 149 1 1166 139 12 101 chr13 13776368 13776626 -88096543 - MLT2C2 LTR ERVL 0 464 230 227 361 28 37 chr13 13777193 13777409 -88095760 - L2 LINE L2 -2160 1154 941 1297 144 14 0 chr13 13777607 13777822 -88095347 + MLT1B LTR MaLR 151 368 -22 695 160 0 23 chr13 13779028 13779159 -88094010 - MLT1B LTR MaLR -258 132 5 211 239 106 80 chr13 13780539 13780652 -88092517 + L2 LINE L2 3180 3295 -18 1893 154 7 3 chr13 13781569 13781927 -88091242 - AluSx SINE Alu 0 312 1 295 297 0 0 chr13 13782749 13782823 -88090346 + MIR SINE MIR 168 241 -21 2571 265 131 1 chr13 13783452 13784383 -88088786 - L2 LINE L2 -397 2917 1866 351 60 0 0 chr13 13784728 13784778 -88088391 + (CAT)n Simple_repeat Simple_repeat 2 51 0 446 295 37 58 chr13 13784987 13785177 -88087992 - L2 LINE L2 0 3272 3087 318 279 146 53 chr13 13785193 13785440 -88087729 + L2 LINE L2 2124 2393 -921 659 264 5 40 chr13 13785658 13785865 -88087304 - MIR SINE MIR -14 248 52 245 320 229 20 chr13 13785884 13786137 -88087032 + L2 LINE L2 2578 2883 -431 746 211 72 0 chr13 13786317 13786525 -88086644 - L1MD3 LINE L1 -14 7981 7759 2327 85 3 0 chr13 13786561 13786854 -88086315 - AluSx SINE Alu -8 304 11 5871 148 21 24 chr13 13786862 13788162 -88085007 - L1MA4 LINE L1 -5 6295 4999 2114 108 16 13 chr13 13788162 13788468 -88084701 - AluSg SINE Alu -3 307 1 5871 148 21 24 chr13 13788468 13788643 -88084526 - L1MA4 LINE L1 -1301 4999 4825 202 281 18 18 chr13 13788776 13788833 -88084336 + L2 LINE L2 3008 3064 -208 1068 209 25 11 chr13 13788845 13789269 -88083900 + MLT1D LTR MaLR 1 505 0 269 362 16 16 chr13 13789354 13789481 -88083688 + L2 LINE L2 3143 3269 -3 339 313 148 8 chr13 13789842 13789970 -88083199 + MER5A DNA MER1_type 44 189 0 299 328 35 9 chr13 13790107 13790223 -88082946 - MIR SINE MIR -27 235 117 264 200 36 0 chr13 13792324 13792379 -88080790 + L2 LINE L2 3254 3310 -3 1493 206 147 25 chr13 13792455 13792964 -88080205 - LTR1B LTR ERV1 -255 571 1 3509 167 30 13 chr13 13794424 13795123 -88078046 + MER50 LTR ERV1 1 711 -23 261 319 118 8 chr13 13795356 13795475 -88077694 + MIR3 SINE MIR 68 199 -9 2294 107 0 3 chr13 13798658 13798958 -88074211 - AluSq SINE Alu -14 299 1 296 350 21 14 chr13 13799755 13799898 -88073271 + MER5A DNA MER1_type 37 180 -9 214 159 91 0 chr13 13799920 13799964 -88073205 + MIR3 SINE MIR 155 202 -6 344 216 159 0 chr13 13800663 13800751 -88072418 + MIR3 SINE MIR 103 204 -4 25 0 0 0 chr13 13802214 13802239 -88070930 + AT_rich Low_complexity Low_complexity 1 25 0 460 287 79 6 chr13 13803342 13803506 -88069663 + MIR SINE MIR 83 258 -4 247 234 26 0 chr13 13803546 13803623 -88069546 - L1MC4 LINE L1 -1347 6695 6617 2192 114 0 3 chr13 13803660 13803958 -88069211 - AluSq SINE Alu -15 298 2 4078 89 32 0 chr13 13804880 13805464 -88067705 - L1PA10 LINE L1 0 6168 5566 1016 199 0 6 chr13 13805896 13806067 -88067102 - AluJb SINE Alu -10 302 133 23 54 0 0 chr13 13808533 13808570 -88064599 + AT_rich Low_complexity Low_complexity 1 37 0 557 351 93 47 chr13 13809004 13809641 -88063528 - L2 LINE L2 -21 3251 2572 356 253 68 27 chr13 13809927 13810073 -88063096 + Charlie8 DNA MER1_type 41 192 -2225 1094 135 43 5 chr13 13810197 13810382 -88062787 + LTR28 LTR ERV1 13 204 -816 181 293 24 0 chr13 13810600 13810641 -88062528 - L3 LINE CR1 -7 1570 1529 1365 194 78 50 chr13 13810726 13811124 -88062045 + LTR27 LTR ERV1 206 614 -22 432 297 51 0 chr13 13811322 13811440 -88061729 - L2 LINE L2 0 3272 3149 37 52 0 0 chr13 13811440 13811498 -88061671 + AT_rich Low_complexity Low_complexity 1 58 0 2417 79 0 16 chr13 13812199 13812503 -88060666 + AluSc SINE Alu 1 299 -10 266 310 159 0 chr13 13814599 13814712 -88058457 + L2 LINE L2 3140 3270 -2 888 170 18 58 chr13 13815418 13815642 -88057527 - MSTB2 LTR MaLR 0 457 243 2623 73 14 0 chr13 13815664 13816035 -88057134 - L1P LINE L1 -1707 4439 4064 6772 59 10 8 chr13 13816038 13817034 -88056135 + L1PA7 LINE L1 5144 6141 -13 805 208 51 10 chr13 13817092 13817289 -88055880 - MSTB2 LTR MaLR -252 205 1 360 242 39 92 chr13 13817588 13817741 -88055428 + MIR SINE MIR 42 186 -76 395 227 0 0 chr13 13817849 13817924 -88055245 + MER63 DNA MER1_type 676 750 -86 286 250 92 0 chr13 13817927 13818003 -88055166 + MER63 DNA MER1_type 979 1061 0 229 289 184 7 chr13 13818368 13818520 -88054649 - MIR SINE MIR -69 193 15 2601 55 0 3 chr13 13819401 13819713 -88053456 - AluY SINE Alu 0 311 1 993 153 7 0 chr13 13820228 13820432 -88052737 - AluSg/x SINE Alu 0 336 132 436 174 42 8 chr13 13820515 13820651 -88052518 - L1MA4A LINE L1 -157 2350 2249 372 284 195 2 chr13 13820720 13820905 -88052264 - HAL1b LINE L1 -149 2358 754 2208 120 0 13 chr13 13821355 13821663 -88051506 - AluSc SINE Alu -4 305 2 323 282 224 4 chr13 13821678 13821937 -88051232 - HAL1 LINE L1 -635 1872 1557 260 263 37 37 chr13 13822312 13822502 -88050667 - HAL1 LINE L1 -1327 1180 991 2104 209 87 26 chr13 13822503 13823111 -88050058 - L1MB7 LINE L1 -10 6174 5530 361 248 91 52 chr13 13823162 13823392 -88049777 - LTR40b LTR ERVL -88 374 136 206 323 31 0 chr13 13823559 13823624 -88049545 - L2 LINE L2 -736 2578 2512 232 204 0 0 chr13 13823624 13823673 -88049496 - HAL1 LINE L1 -969 1538 1490 960 283 188 50 chr13 13823859 13824807 -88048362 - HAL1 LINE L1 -343 2164 1348 1826 202 66 7 chr13 13824807 13825247 -88047922 + MLT1C LTR MaLR 1 466 -1 960 283 188 50 chr13 13825247 13825351 -88047818 - HAL1 LINE L1 -1159 1348 1260 1540 196 36 0 chr13 13825351 13825631 -88047538 - AluJo SINE Alu -10 302 13 960 283 188 50 chr13 13825631 13826196 -88046973 - HAL1 LINE L1 -1247 1260 774 2240 192 35 71 chr13 13826196 13826831 -88046338 - LTR9 LTR ERV1 0 612 1 960 283 188 50 chr13 13826831 13827006 -88046163 - HAL1 LINE L1 -1733 774 123 327 262 138 11 chr13 13827635 13827855 -88045314 - L1M4 LINE L1 -1309 3184 1054 280 247 47 0 chr13 13828011 13828096 -88045073 + GA-rich Low_complexity Low_complexity 3 91 0 24 0 0 0 chr13 13828590 13828614 -88044555 + AT_rich Low_complexity Low_complexity 1 24 0 199 286 16 63 chr13 13828955 13829018 -88044151 + MIR SINE MIR 87 146 -62 415 275 41 119 chr13 13829030 13829299 -88043870 + MIR SINE MIR 15 262 0 250 255 54 54 chr13 13829756 13829905 -88043264 + MLT1J2 LTR MaLR 302 450 0 329 252 111 74 chr13 13829926 13830061 -88043108 - MIR3 SINE MIR -60 148 9 217 317 35 48 chr13 13830752 13830897 -88042272 + MER5A DNA MER1_type 4 146 -43 207 233 116 101 chr13 13831067 13831196 -88041973 - L3 LINE CR1 -829 748 618 208 137 39 0 chr13 13831198 13831249 -88041920 + (TA)n Simple_repeat Simple_repeat 2 54 0 254 121 61 10 chr13 13831309 13831408 -88041761 + (TA)n Simple_repeat Simple_repeat 1 104 0 456 86 0 0 chr13 13831731 13831801 -88041368 + MER57B LTR ERV1 365 434 0 2178 169 67 36 chr13 13831801 13832389 -88040780 + MER21B LTR ERV1 199 848 -15 251 277 54 8 chr13 13832539 13832669 -88040500 - L1ME4a LINE L1 -12 6109 5974 502 254 144 28 chr13 13832877 13833196 -88039973 - HsTC2 DNA Tc2 -1045 853 498 2154 118 21 0 chr13 13833533 13833820 -88039349 - AluSx SINE Alu -19 293 1 48 72 0 0 chr13 13834123 13834220 -88038949 + AT_rich Low_complexity Low_complexity 1 97 0 438 248 27 7 chr13 13834587 13834736 -88038433 + MLT2B1 LTR ERVL 327 478 -42 409 301 92 32 chr13 13835103 13835352 -88037817 - HAL1b LINE L1 -860 488 225 815 291 82 12 chr13 13835798 13836117 -88037052 - MLT1H LTR MaLR 0 549 209 2037 129 26 11 chr13 13836481 13836831 -88036338 - THE1A LTR MaLR 0 355 1 11339 89 12 22 chr13 13836831 13838005 -88035164 - THE1A-int LTR MaLR 0 1580 423 2224 109 0 0 chr13 13838005 13838298 -88034871 + AluSx SINE Alu 20 312 0 11339 89 12 22 chr13 13838298 13838718 -88034451 - THE1A-int LTR MaLR -1157 423 1 2091 131 23 11 chr13 13838718 13839069 -88034100 - THE1A LTR MaLR 0 355 1 1940 180 0 0 chr13 13839652 13839957 -88033212 + AluJb SINE Alu 1 305 -7 465 87 19 48 chr13 13839965 13840068 -88033101 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 * 615 121 0 0 chr13 13840053 13840152 -88033017 + (GGAGA)n Simple_repeat Simple_repeat 2 100 0 180 247 68 27 chr13 13840415 13840488 -88032681 - L2 LINE L2 -938 2376 2301 37 76 0 0 chr13 13840904 13840983 -88032186 + AT_rich Low_complexity Low_complexity 1 79 0 240 307 123 45 chr13 13841916 13842095 -88031074 - MIR SINE MIR -50 212 20 477 222 269 0 chr13 13842235 13842406 -88030763 - LTR50 LTR ERVL 0 795 579 22 35 0 0 chr13 13842497 13842526 -88030643 + AT_rich Low_complexity Low_complexity 1 29 0 861 222 11 0 chr13 13842635 13842815 -88030354 + MER97b DNA MER1_type? 1 182 -871 267 246 0 43 chr13 13843462 13843531 -88029638 - MLT1J2 LTR MaLR -120 330 265 331 229 110 0 chr13 13843887 13843996 -88029173 - MLT1J LTR MaLR -388 123 3 27 29 0 0 chr13 13844308 13844342 -88028827 + AT_rich Low_complexity Low_complexity 1 34 0 1554 120 58 82 chr13 13844413 13844705 -88028464 - AluJb SINE Alu -27 285 1 1810 181 29 12 chr13 13845332 13845674 -88027495 + MER7A DNA MER2_type 1 346 0 532 327 183 26 chr13 13845783 13846318 -88026851 - L3 LINE CR1 -1 1576 958 278 131 246 0 chr13 13846850 13846911 -88026258 + MADE1 DNA Mariner 1 76 -4 253 270 104 0 chr13 13846950 13847065 -88026104 - L1MEc LINE L1 -4002 2394 2268 780 218 143 4 chr13 13847065 13847345 -88025824 - MER33 DNA MER1_type 0 324 6 1241 237 134 46 chr13 13847351 13847536 -88025633 - L1MEc LINE L1 -4122 2274 2107 180 0 0 0 chr13 13847536 13847556 -88025613 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1241 237 134 46 chr13 13847556 13847605 -88025564 - L1MEc LINE L1 -4289 2107 2064 2141 104 3 10 chr13 13847605 13847903 -88025266 - AluSx SINE Alu -16 296 1 1241 237 134 46 chr13 13847903 13847997 -88025172 - L1MEc LINE L1 -4332 2064 1980 315 0 0 0 chr13 13847997 13848032 -88025137 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1241 237 134 46 chr13 13848032 13848601 -88024568 - L1MEc LINE L1 -4416 1980 1295 2081 124 3 0 chr13 13849531 13849821 -88023348 + AluSx SINE Alu 7 297 -15 1382 238 118 72 chr13 13849898 13850465 -88022704 + MLT1E LTR MaLR 1 593 0 276 356 50 0 chr13 13850511 13850612 -88022557 - MIR SINE MIR -156 106 1 2515 122 12 41 chr13 13850720 13850766 -88022403 + L1PB3 LINE L1 5741 5787 -367 2258 116 7 0 chr13 13850766 13851068 -88022101 + AluSx SINE Alu 1 304 -8 2515 122 12 41 chr13 13851068 13851440 -88021729 + L1PB3 LINE L1 5787 6147 -7 186 43 0 0 chr13 13851443 13851466 -88021703 + (TA)n Simple_repeat Simple_repeat 2 24 0 320 270 35 35 chr13 13851552 13851667 -88021502 + MLT1J LTR MaLR 330 444 -67 21 36 0 0 chr13 13851856 13851884 -88021285 + AT_rich Low_complexity Low_complexity 1 28 0 229 289 169 0 chr13 13852396 13852479 -88020690 - L2 LINE L2 -9 3304 3208 461 301 75 43 chr13 13852983 13853262 -88019907 + L1 LINE L1 4732 5019 -1127 7490 223 76 22 chr13 13853274 13854410 -88018759 + L1MDa LINE L1 19 1093 -5447 4498 71 3 0 chr13 13854410 13854987 -88018182 + L1PA7 LINE L1 5573 6151 -3 7490 223 76 22 chr13 13854987 13856029 -88017140 + L1MDa LINE L1 1093 2314 -4226 2020 230 38 11 chr13 13856042 13856563 -88016606 - MER74A LTR ERVL -14 544 10 270 0 0 0 chr13 13856563 13856593 -88016576 + (TG)n Simple_repeat Simple_repeat 2 31 0 2529 104 6 8 chr13 13856633 13856987 -88016182 - THE1A LTR MaLR -2 353 1 338 221 57 6 chr13 13856991 13857149 -88016020 + L1MDa LINE L1 2320 2485 -4055 538 253 18 29 chr13 13857167 13857337 -88015832 + L1MCb LINE L1 8 175 -5870 2954 215 61 39 chr13 13857337 13858108 -88015061 + L1MCb LINE L1 1049 1802 -4762 1060 200 0 0 chr13 13858108 13858283 -88014886 + FAM SINE Alu 1 175 0 2954 215 61 39 chr13 13858283 13858423 -88014746 + L1MCb LINE L1 1802 1937 -4627 2034 148 0 7 chr13 13858423 13858727 -88014442 + AluSx SINE Alu 1 302 -10 2954 215 61 39 chr13 13858727 13859395 -88013774 + L1MCb LINE L1 1937 2589 -3975 1400 166 15 109 chr13 13859395 13859798 -88013371 + MLT1A1 LTR MaLR 1 365 0 2954 215 61 39 chr13 13859798 13860546 -88012623 + L1MCb LINE L1 2589 3524 -3040 644 235 60 0 chr13 13860757 13860923 -88012246 + MER58C DNA MER1_type 40 215 0 236 310 23 62 chr13 13860924 13861053 -88012116 - MLT1I LTR MaLR -17 392 269 236 215 7 36 chr13 13861541 13861660 -88011509 + L1MDa LINE L1 2454 2571 -3969 1945 114 75 33 chr13 13861856 13862216 -88010953 + THE1C LTR MaLR 1 375 0 1802 135 95 20 chr13 13862368 13862717 -88010452 + THE1C LTR MaLR 1 375 0 750 161 200 0 chr13 13862719 13862874 -88010295 - MER5A DNA MER1_type -3 186 1 1836 143 0 41 chr13 13863618 13864033 -88009136 - AluSx SINE Alu 0 404 2 648 232 124 36 chr13 13864223 13864417 -88008752 - MIR SINE MIR -3 259 49 1580 178 40 36 chr13 13865404 13865707 -88007462 - AluJo SINE Alu -8 304 1 1227 275 56 11 chr13 13865714 13866161 -88007008 - L1ME3A LINE L1 -193 5960 5494 1773 315 65 17 chr13 13866701 13867349 -88005820 + MER115 DNA AcHobo 4 682 -11 21 36 0 0 chr13 13867963 13867991 -88005178 + AT_rich Low_complexity Low_complexity 1 28 0 2419 86 0 10 chr13 13868790 13869092 -88004077 - AluSc SINE Alu -6 303 5 188 323 147 63 chr13 13869223 13869557 -88003612 - L2 LINE L2 -5 3267 2906 203 343 0 43 chr13 13871687 13871757 -88001412 + L2 LINE L2 3201 3267 -5 647 282 104 6 chr13 13872211 13872445 -88000724 + MIR SINE MIR 4 259 -3 189 217 22 22 chr13 13872708 13872754 -88000415 + MER5B DNA MER1_type 2 47 -131 195 302 0 16 chr13 13872765 13872828 -88000341 - MER5B DNA MER1_type -110 68 7 633 68 39 0 chr13 13873177 13873280 -87999889 + (TCTA)n Simple_repeat Simple_repeat 3 109 0 312 27 0 0 chr13 13873280 13873317 -87999852 + (CAT)n Simple_repeat Simple_repeat 2 38 0 552 323 69 37 chr13 13873999 13874349 -87998820 - L1ME3A LINE L1 -1288 4841 4481 2109 139 7 3 chr13 13874559 13874860 -87998309 - AluJb SINE Alu -10 302 1 237 294 42 25 chr13 13874879 13874998 -87998171 - L1ME3A LINE L1 -2010 4119 3999 2545 212 36 15 chr13 13875037 13875565 -87997604 + MLT1F LTR MaLR 4 542 0 21 0 0 0 chr13 13875570 13875591 -87997578 + AT_rich Low_complexity Low_complexity 1 21 0 1771 174 14 0 chr13 13875598 13875959 -87997210 + AluSx SINE Alu 1 365 0 526 308 45 32 chr13 13875986 13876233 -87996936 - L1ME3A LINE L1 -2218 3911 3662 294 95 0 0 chr13 13877565 13877607 -87995562 + (TTC)n Simple_repeat Simple_repeat 2 43 0 378 282 20 67 chr13 13878249 13878398 -87994771 + MIR SINE MIR 37 178 -84 356 311 102 8 chr13 13878722 13878966 -87994203 - L1ME3A LINE L1 -2829 3300 3034 321 26 0 0 chr13 13881841 13881879 -87991290 + (GA)n Simple_repeat Simple_repeat 2 39 0 252 171 0 0 chr13 13881977 13882018 -87991151 - FLAM SINE Alu -9 124 84 955 188 8 109 chr13 13882019 13882258 -87990911 - AluJo SINE Alu -95 217 3 1382 187 146 31 chr13 13882365 13882783 -87990386 - MER31B LTR ERV1 0 466 1 215 327 19 29 chr13 13883026 13883037 -87990132 + MER5A DNA MER1_type 4 13 -176 499 153 41 0 chr13 13883037 13883135 -87990034 - MER5A DNA MER1_type 0 189 88 2251 99 10 0 chr13 13883325 13883629 -87989540 + AluSp SINE Alu 5 311 -2 348 193 57 23 chr13 13883632 13883720 -87989449 - MER5A DNA MER1_type -98 91 1 182 277 0 0 chr13 13884552 13884599 -87988570 - L2 LINE L2 0 3313 3267 214 185 272 0 chr13 13884689 13884781 -87988388 - L2 LINE L2 -248 3065 2949 236 274 69 0 chr13 13884829 13884931 -87988238 - L1ME3A LINE L1 -6008 111 3 502 273 65 25 chr13 13884931 13885122 -87988047 - MIR SINE MIR -62 146 3 270 339 26 0 chr13 13885808 13885923 -87987246 + MIR SINE MIR 33 150 -112 416 241 43 0 chr13 13886385 13886501 -87986668 + MER45A DNA AcHobo 58 178 0 2597 98 25 6 chr13 13886585 13886942 -87986227 - THE1B LTR MaLR 0 364 1 4951 63 11 0 chr13 13887887 13888524 -87984645 + L1PA8 LINE L1 5526 6169 -3 3360 124 4 4 chr13 13888853 13889354 -87983815 - MER1A DNA MER1_type 0 529 29 254 250 0 17 chr13 13889501 13889561 -87983608 + CT-rich Low_complexity Low_complexity 2 60 0 192 111 0 0 chr13 13889837 13889873 -87983296 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 274 291 50 21 chr13 13890348 13890489 -87982680 - L1MDa LINE L1 -4564 1565 1421 482 221 21 35 chr13 13890677 13890822 -87982347 - L1MDa LINE L1 -4914 1205 1063 600 167 16 24 chr13 13890860 13890986 -87982183 - MLT1B LTR MaLR 0 390 266 2211 196 108 65 chr13 13891002 13891667 -87981502 + LTR8A LTR ERV1 34 727 0 692 164 109 134 chr13 13891667 13891903 -87981266 - MLT1B LTR MaLR -122 268 39 587 350 49 55 chr13 13891922 13892490 -87980679 - L1MDa LINE L1 -5111 1008 444 284 292 97 0 chr13 13893164 13893277 -87979892 - MIR SINE MIR -65 197 74 456 19 0 0 chr13 13894703 13894756 -87978413 + (TG)n Simple_repeat Simple_repeat 2 54 0 267 79 0 0 chr13 13895025 13895063 -87978106 + (CA)n Simple_repeat Simple_repeat 1 38 0 228 349 12 12 chr13 13896022 13896105 -87977064 - L2 LINE L2 -1 3271 3189 341 308 175 0 chr13 13896116 13896259 -87976910 + MIR SINE MIR 9 176 -86 238 315 96 52 chr13 13897236 13897506 -87975663 - L2 LINE L2 -712 2602 2321 319 343 64 17 chr13 13897611 13897783 -87975386 + MLT1I LTR MaLR 230 409 0 234 339 16 39 chr13 13897819 13897946 -87975223 - L2 LINE L2 -1045 2269 2146 892 256 79 15 chr13 13897946 13898286 -87974883 - LTR33A LTR ERVL 0 523 162 901 292 115 5 chr13 13898296 13898669 -87974500 - ERVL LTR ERVL -632 5132 4719 208 391 82 9 chr13 13898749 13898859 -87974310 + MIR SINE MIR 34 151 -57 308 237 0 0 chr13 13899083 13899142 -87974027 + L2 LINE L2 2995 3053 -219 2608 150 13 4 chr13 13899240 13899699 -87973470 + L1MC2 LINE L1 5874 6336 -8 2063 151 27 0 chr13 13899967 13900305 -87972864 - MER7A DNA MER2_type -1 345 1 736 126 0 0 chr13 13900348 13900451 -87972718 - AluSp/q SINE Alu -23 290 188 2268 119 0 0 chr13 13900453 13900756 -87972413 - AluSx SINE Alu -9 303 1 2322 138 54 0 chr13 13901217 13901587 -87971582 - MLT1B LTR MaLR 0 390 1 1957 144 0 3 chr13 13901797 13902089 -87971080 + AluSx SINE Alu 1 291 -21 1996 199 19 28 chr13 13902166 13902629 -87970540 + LTR40b LTR ERVL 1 459 -3 6128 147 21 74 chr13 13904995 13906579 -87966590 - L1MC2 LINE L1 0 6624 5153 318 290 0 0 chr13 13906576 13906669 -87966500 - L1MC2 LINE L1 -2026 4400 4308 * 4889 227 24 48 chr13 13906670 13908591 -87964578 - L1MC2 LINE L1 -2303 4123 2256 2251 173 24 30 chr13 13908580 13908933 -87964236 - L1MC2 LINE L1 -4467 1959 1605 * 1777 136 44 57 chr13 13908933 13909249 -87963920 - AluJb SINE Alu 0 312 1 2251 173 24 30 chr13 13909249 13909707 -87963462 - L1MC2 LINE L1 -4821 1605 1063 1711 214 66 35 chr13 13909698 13910184 -87962985 - L1MC2 LINE L1 -5905 521 21 * 442 288 70 90 chr13 13910577 13910842 -87962327 + L2 LINE L2 2807 3063 -250 2453 66 0 7 chr13 13910842 13911145 -87962024 + AluY SINE Alu 2 302 -9 442 288 70 90 chr13 13911145 13911292 -87961877 + L2 LINE L2 3063 3211 -102 236 297 0 14 chr13 13911660 13911734 -87961435 + MLT1J2 LTR MaLR 70 142 -308 2015 167 34 0 chr13 13911948 13912302 -87960867 - MER47A DNA MER2_type 0 366 1 354 271 8 54 chr13 13913182 13913311 -87959858 + MIR SINE MIR 126 248 -14 182 218 0 18 chr13 13913322 13913377 -87959792 + CT-rich Low_complexity Low_complexity 1 54 0 290 241 17 52 chr13 13913417 13913591 -87959578 + (TA)n Simple_repeat Simple_repeat 2 169 0 439 310 138 16 chr13 13913762 13914210 -87958959 - L1ME LINE L1 -363 5799 5297 337 253 144 26 chr13 13914250 13914444 -87958725 - L1ME LINE L1 -913 5233 5017 1756 188 0 13 chr13 13915908 13916212 -87956957 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr13 13916606 13916631 -87956538 + AT_rich Low_complexity Low_complexity 1 25 0 805 245 20 70 chr13 13916675 13917030 -87956139 - L1ME2 LINE L1 -150 6014 5678 389 285 17 52 chr13 13917030 13917202 -87955967 + L1M4 LINE L1 2862 3027 -3119 400 358 47 12 chr13 13917264 13917605 -87955564 + L1MEc LINE L1 47 399 -5997 6605 75 16 3 chr13 13917824 13920944 -87952225 - L1PA7 LINE L1 -3 6151 2937 697 355 82 7 chr13 13920944 13921370 -87951799 - L1MDa LINE L1 -4474 1655 1198 1976 146 13 3 chr13 13921458 13921766 -87951403 + MER1B DNA MER1_type 29 339 0 315 219 31 10 chr13 13921828 13921924 -87951245 - L1MDa LINE L1 -5000 1119 1022 4090 269 108 18 chr13 13922294 13923973 -87949196 - L2 LINE L2 -3 3310 1415 35 54 0 0 chr13 13924623 13924679 -87948490 + AT_rich Low_complexity Low_complexity 1 56 0 220 329 12 12 chr13 13924733 13924818 -87948351 + L2 LINE L2 3186 3270 -2 1897 152 3 23 chr13 13925179 13925341 -87947828 - AluSx SINE Alu -16 296 141 2187 136 0 0 chr13 13925341 13925635 -87947534 - AluSg SINE Alu -16 294 1 1897 152 3 23 chr13 13925635 13925774 -87947395 - AluSx SINE Alu -171 141 1 5066 210 57 43 chr13 13926141 13927697 -87945472 + L1M4 LINE L1 16 1592 -4950 444 318 45 23 chr13 13927876 13928052 -87945117 + MIR SINE MIR 14 193 -69 213 94 0 0 chr13 13928052 13928084 -87945085 + (CA)n Simple_repeat Simple_repeat 2 33 0 33 43 0 0 chr13 13928698 13928745 -87944424 + AT_rich Low_complexity Low_complexity 1 47 0 210 254 0 0 chr13 13928820 13928879 -87944290 + (TA)n Simple_repeat Simple_repeat 2 60 0 301 294 139 13 chr13 13928882 13929120 -87944049 - L1MC4a LINE L1 -1902 5906 5639 302 247 0 22 chr13 13929129 13929218 -87943951 + MLT1L LTR MaLR 1 87 -528 274 263 12 0 chr13 13929547 13929627 -87943542 - L1MC4a LINE L1 -2171 5637 5557 235 268 330 0 chr13 13930241 13930353 -87942816 - MER5A DNA MER1_type 0 189 41 535 324 34 0 chr13 13930362 13930541 -87942628 + HERV16 LTR ERVL 1390 1574 -3422 497 261 73 32 chr13 13930631 13930849 -87942320 - LTR33A LTR ERVL 0 523 297 1164 248 124 21 chr13 13930993 13931460 -87941709 + MLT1H1 LTR MaLR 35 549 -6 406 267 39 61 chr13 13932576 13932756 -87940413 + MER5B DNA MER1_type 1 176 -2 3699 196 9 15 chr13 13934364 13935222 -87937947 - L1P LINE L1 -789 5357 4505 259 224 0 82 chr13 13935240 13935338 -87937831 + L1MC4 LINE L1 6614 6703 -1339 481 232 62 0 chr13 13935423 13935535 -87937634 + MER63A DNA MER1_type 2 120 0 * 1812 174 93 30 chr13 13935533 13935994 -87937175 + LTR2B LTR ERV1 1 490 0 516 240 0 0 chr13 13935994 13936090 -87937079 + MER63A DNA MER1_type 115 210 0 226 302 71 71 chr13 13936209 13936335 -87936834 + MIR SINE MIR 20 145 -117 17354 61 1 1 chr13 13936790 13942754 -87930415 - L1PA5 LINE L1 -2 6152 11 2414 94 0 0 chr13 13942920 13943228 -87929941 - AluY SINE Alu -3 308 1 270 313 47 26 chr13 13943248 13943440 -87929729 - MLT1K LTR MaLR -12 576 381 1314 218 41 24 chr13 13943626 13943920 -87929249 + MLT1A1 LTR MaLR 67 365 0 5658 187 76 148 chr13 13943921 13945790 -87927379 + MLT1A1-int LTR MaLR 2 1735 0 613 181 153 173 chr13 13945790 13946194 -87926975 + MLT1A1 LTR MaLR 1 396 0 3011 157 42 11 chr13 13946374 13946903 -87926266 + LTR35 LTR ERV1 74 618 0 29 47 0 0 chr13 13948498 13948541 -87924628 + AT_rich Low_complexity Low_complexity 1 43 0 750 196 199 79 chr13 13948825 13949091 -87924078 - MER46C DNA MER2_type -4 334 37 234 186 31 56 chr13 13949562 13949723 -87923446 + (TTATA)n Simple_repeat Simple_repeat 4 160 0 34 55 0 0 chr13 13949734 13949789 -87923380 + AT_rich Low_complexity Low_complexity 1 55 0 2353 109 0 0 chr13 13950349 13950653 -87922516 + AluSx SINE Alu 1 304 -8 1486 282 216 17 chr13 13950856 13951034 -87922135 + L2 LINE L2 1637 1778 -1536 1624 183 23 3 chr13 13951034 13951334 -87921835 - AluJo SINE Alu -6 306 1 1486 282 216 17 chr13 13951334 13952096 -87921073 + L2 LINE L2 1778 2764 -550 226 255 61 20 chr13 13952538 13952636 -87920533 + LTR67 LTR ERVL 432 533 -24 286 287 70 31 chr13 13952653 13952782 -87920387 + L2 LINE L2 2755 2888 -426 1712 192 0 3 chr13 13954168 13954459 -87918710 + AluJb SINE Alu 1 290 -22 36 23 0 0 chr13 13954459 13954502 -87918667 + AT_rich Low_complexity Low_complexity 1 43 0 1535 175 45 25 chr13 13954825 13955111 -87918058 - AluJo SINE Alu -18 294 3 731 301 108 34 chr13 13955415 13955830 -87917339 + MLT1J LTR MaLR 59 504 -7 701 319 140 38 chr13 13955953 13956105 -87917064 - L3 LINE CR1 -207 1370 1235 2390 106 0 0 chr13 13956105 13956417 -87916752 - AluSx SINE Alu 0 312 1 701 319 140 38 chr13 13956417 13956998 -87916171 - L3 LINE CR1 -342 1235 562 390 299 50 58 chr13 13958256 13958497 -87914672 - MIR SINE MIR -16 246 8 2157 175 91 30 chr13 13959346 13959808 -87913361 - LTR2B LTR ERV1 0 490 1 972 187 66 10 chr13 13959970 13960168 -87913001 - MLT1C LTR MaLR 0 467 259 427 79 86 7 chr13 13960392 13960544 -87912625 + (TA)n Simple_repeat Simple_repeat 1 164 0 301 92 86 18 chr13 13960620 13960783 -87912386 + (TA)n Simple_repeat Simple_repeat 2 175 0 31 44 0 0 chr13 13960789 13960834 -87912335 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 13960908 13960929 -87912240 + AT_rich Low_complexity Low_complexity 1 21 0 928 181 10 36 chr13 13960961 13961154 -87912015 - MER2 DNA MER2_type -156 189 2 2841 233 51 13 chr13 13961160 13961788 -87911381 + MER82 DNA MER2_type 2 653 0 1458 167 57 88 chr13 13961788 13961816 -87911353 + L1MB4 LINE L1 5787 5814 -366 2517 53 7 0 chr13 13961816 13962115 -87911054 + AluY SINE Alu 1 301 -10 1458 167 57 88 chr13 13962115 13962487 -87910682 + L1MB4 LINE L1 5814 6174 -6 1634 226 11 50 chr13 13963647 13963696 -87909473 + MLT1A1 LTR MaLR 1 50 -315 2152 121 0 3 chr13 13963696 13963986 -87909183 - AluSx SINE Alu -23 289 1 1634 226 11 50 chr13 13963986 13964316 -87908853 + MLT1A1 LTR MaLR 50 365 0 2379 83 204 3 chr13 13964460 13964833 -87908336 - LTR7 LTR ERV1 -2 448 1 9538 101 73 60 chr13 13964860 13967124 -87906045 - pTR5 LTR ERV1 0 8399 504 307 194 0 0 chr13 13967123 13967185 -87905984 - HERV17 LTR ERV1 -835 7564 7503 * 546 132 85 9 chr13 13967183 13967289 -87905880 - HERV17 LTR ERV1 -7726 900 787 3672 55 24 2 chr13 13967292 13967743 -87905426 - LTR2B LTR ERV1 -29 461 1 2264 100 0 3 chr13 13968790 13969089 -87904080 + AluSg SINE Alu 1 298 -12 191 204 93 0 chr13 13969099 13969153 -87904016 - MIR SINE MIR -56 206 148 279 174 0 0 chr13 13969191 13969237 -87903932 - MIR SINE MIR -105 157 112 1835 179 92 113 chr13 13969888 13970391 -87902778 - MLT2B1 LTR ERVL 0 520 27 2066 149 0 0 chr13 13970391 13970686 -87902483 - AluSx SINE Alu -13 299 5 1835 179 92 113 chr13 13970686 13970713 -87902456 - MLT2B1 LTR ERVL -493 27 1 955 244 188 73 chr13 13970747 13971214 -87901955 + MLT1G1 LTR MaLR 22 595 0 250 296 28 0 chr13 13971943 13972014 -87901155 + L2 LINE L2 3193 3265 -7 320 321 41 129 chr13 13972259 13972577 -87900592 + L2 LINE L2 2983 3272 0 295 279 104 78 chr13 13973370 13973485 -87899684 + LTR16C LTR ERVL 185 296 -195 2218 110 0 13 chr13 13973485 13973784 -87899385 + AluSx SINE Alu 1 295 -17 295 279 104 78 chr13 13973784 13973937 -87899232 + LTR16C LTR ERVL 296 460 -31 410 256 45 75 chr13 13973990 13974022 -87899147 + L2 LINE L2 3113 3144 -169 255 79 0 0 chr13 13974022 13974060 -87899109 + (TA)n Simple_repeat Simple_repeat 2 39 0 2309 96 0 7 chr13 13974063 13974365 -87898804 - AluY SINE Alu -11 300 1 410 256 45 75 chr13 13974365 13974527 -87898642 + L2 LINE L2 3146 3305 -8 267 265 166 60 chr13 13975515 13975666 -87897503 - MER5A DNA MER1_type -22 167 1 2372 94 0 3 chr13 13976654 13976953 -87896216 + AluSp SINE Alu 1 298 -15 269 125 0 0 chr13 13976953 13976993 -87896176 + HsTC2 DNA Tc2 15 54 -1844 387 233 82 80 chr13 13977243 13977432 -87895737 - L1ME3 LINE L1 -281 5881 5681 2641 150 51 54 chr13 13977562 13978114 -87895055 - L1MA6 LINE L1 0 6300 5751 * 7407 214 20 7 chr13 13978109 13979990 -87893179 - L1M2 LINE L1 -2348 4819 2915 296 129 18 33 chr13 13980171 13980231 -87892938 - L1M2 LINE L1 -4299 2869 2383 * 768 155 61 30 chr13 13980205 13980365 -87892804 - L1M2 LINE L1 -6609 559 2 668 290 84 20 chr13 13980377 13980867 -87892302 - L1M4 LINE L1 -976 5170 4650 2533 103 96 5 chr13 13980868 13981274 -87891895 + LTR7 LTR ERV1 1 443 -7 1118 281 91 31 chr13 13981280 13982202 -87890967 - L1M4 LINE L1 -1492 4654 3678 396 273 23 2 chr13 13982311 13982487 -87890682 - MIR SINE MIR -29 233 13 991 181 0 28 chr13 13985110 13985292 -87887877 + AluJb SINE Alu 136 312 0 2997 34 7 3 chr13 13985558 13985963 -87887206 - MER11A LTR ERVK -762 504 1 6319 177 38 5 chr13 13985963 13987060 -87886109 - L1 LINE L1 -5489 2076 943 2250 125 0 0 chr13 13987540 13987845 -87885324 + AluSx SINE Alu 1 305 -7 3173 153 149 17 chr13 13987933 13988248 -87884921 + LTR8A LTR ERV1 1 273 -454 210 37 0 0 chr13 13988248 13988275 -87884894 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3173 153 149 17 chr13 13988275 13988601 -87884568 + LTR8A LTR ERV1 273 727 0 564 267 35 6 chr13 13989302 13989359 -87883810 + L1M4b LINE L1 1 55 -6804 198 0 0 0 chr13 13989359 13989381 -87883788 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 564 267 35 6 chr13 13989381 13989495 -87883674 + L1M4b LINE L1 55 177 -6682 25 65 0 0 chr13 13989495 13989541 -87883628 + AT_rich Low_complexity Low_complexity 1 46 0 39553 75 4 3 chr13 13989542 13995647 -87877522 - L1PA5 LINE L1 -9 6145 5 6078 207 54 73 chr13 13995872 13997589 -87875580 + L1M4b LINE L1 182 1882 -4973 2928 154 16 13 chr13 13997654 13998040 -87875129 + L1MA9 LINE L1 5098 5489 -802 2797 19 0 0 chr13 13998040 13998347 -87874822 + AluYa5 SINE Alu 1 307 -4 2928 154 16 13 chr13 13998347 13998639 -87874530 + L1MA9 LINE L1 5489 5779 -512 246 217 17 33 chr13 13998673 13998793 -87874376 + (TATATG)n Simple_repeat Simple_repeat 5 122 0 2102 144 39 23 chr13 13998795 13999183 -87873986 + L1MA9 LINE L1 5780 6173 -139 2336 147 48 5 chr13 13999195 13999590 -87873579 + MSTB LTR MaLR 8 419 -7 761 134 56 0 chr13 13999590 13999732 -87873437 + L1MA9 LINE L1 6161 6310 -2 1023 268 57 16 chr13 13999756 14000122 -87873047 + L1M4b LINE L1 2028 2408 -4551 647 121 0 0 chr13 14000158 14000257 -87872912 - L1PA8 LINE L1 0 6172 6074 6114 229 58 71 chr13 14000395 14000840 -87872329 + L1M4b LINE L1 2473 2922 -4035 3805 91 0 6 chr13 14000840 14001354 -87871815 + MER9 LTR ERVK 1 511 0 6114 229 58 71 chr13 14001354 14003803 -87869366 + L1M4b LINE L1 2922 5268 -1689 398 204 9 80 chr13 14003918 14004031 -87869138 + MIR SINE MIR 52 156 -106 875 312 60 10 chr13 14004207 14004684 -87868485 + L2 LINE L2 2644 3154 -159 664 288 41 0 chr13 14004707 14004926 -87868243 + LTR16A LTR ERVL 57 284 -166 497 262 55 18 chr13 14005001 14005165 -87868004 + L2 LINE L2 3140 3309 -4 279 0 0 0 chr13 14005422 14005453 -87867716 + (TA)n Simple_repeat Simple_repeat 1 31 0 444 118 0 0 chr13 14005981 14006049 -87867120 + (TA)n Simple_repeat Simple_repeat 1 68 0 310 27 0 0 chr13 14006137 14006174 -87866995 + PABL_A-int LTR ERV1 1667 1703 -3312 262 219 0 130 chr13 14007173 14007203 -87865966 + L1MEc LINE L1 1257 1289 -5107 1931 122 4 7 chr13 14007203 14007473 -87865696 - AluSx SINE Alu -43 269 1 262 219 0 130 chr13 14007473 14007518 -87865651 + L1MEc LINE L1 1289 1307 -5089 2066 120 17 10 chr13 14007518 14007819 -87865350 + AluSx SINE Alu 1 303 -9 262 219 0 130 chr13 14007819 14007888 -87865281 + L1MEc LINE L1 1307 1383 -5013 336 263 102 54 chr13 14007914 14008100 -87865069 + L1MC/D LINE L1 5592 5786 -2022 268 292 42 25 chr13 14008578 14008698 -87864471 + LTR16C LTR ERVL 370 491 0 233 169 17 0 chr13 14008801 14008860 -87864309 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 184 381 129 14 chr13 14009207 14009417 -87863752 - L2 LINE L2 -475 2839 2606 2102 89 11 11 chr13 14010279 14010561 -87862608 - AluSx SINE Alu -30 282 1 360 295 162 6 chr13 14010892 14011090 -87862079 - MLT1J1 LTR MaLR -125 325 105 1869 152 10 3 chr13 14011341 14011643 -87861526 + AluSx SINE Alu 1 304 -8 412 224 48 34 chr13 14012024 14012171 -87860998 - MER53 DNA DNA -40 149 1 706 322 22 0 chr13 14012273 14012500 -87860669 + MIR SINE MIR 3 234 -28 562 200 75 0 chr13 14013138 14013258 -87859911 - MER5A DNA MER1_type 0 189 61 1874 44 0 18 chr13 14013264 14013492 -87859677 - AluY SINE Alu 0 311 88 331 263 0 0 chr13 14014112 14014188 -87858981 + MER5A DNA MER1_type 1 76 -113 2623 61 0 0 chr13 14014188 14014498 -87858671 + AluSg SINE Alu 1 310 0 865 274 36 36 chr13 14014545 14014874 -87858295 + MER110 LTR ERV1 151 479 -12 720 214 83 45 chr13 14015059 14015396 -87857773 - Charlie2 DNA MER1_type -38 2824 2475 12222 195 19 28 chr13 14015398 14017767 -87855402 - L1PA16 LINE L1 -3 6866 4477 2049 153 0 0 chr13 14017767 14018067 -87855102 - AluSx SINE Alu -12 300 1 12222 195 19 28 chr13 14018067 14019707 -87853462 - L1PA16 LINE L1 -2392 4477 2896 1952 97 31 0 chr13 14019707 14019965 -87853204 - AluSx SINE Alu -11 301 36 12222 195 19 28 chr13 14019965 14020128 -87853041 - L1PA16 LINE L1 -3973 2896 2733 1101 211 115 40 chr13 14020128 14020597 -87852572 - Charlie2 DNA MER1_type -381 2481 1978 610 167 15 38 chr13 14020705 14020837 -87852332 - Charlie2 DNA MER1_type -878 1984 1856 639 260 112 30 chr13 14020847 14021143 -87852026 - Charlie2 DNA MER1_type -2542 320 1 213 300 75 12 chr13 14021925 14022005 -87851164 + MIR SINE MIR 82 166 -96 2366 122 67 10 chr13 14022093 14022496 -87850673 - MSTB LTR MaLR 0 426 1 2311 231 44 26 chr13 14022496 14022640 -87850529 + L1MC4a LINE L1 6407 6547 -1261 258 32 0 0 chr13 14022640 14022671 -87850498 + (TGGA)n Simple_repeat Simple_repeat 3 33 0 2311 231 44 26 chr13 14022671 14023141 -87850028 + L1MC4a LINE L1 6547 7032 -776 2275 93 0 3 chr13 14023147 14023457 -87849712 - AluY SINE Alu -2 309 1 1940 106 0 34 chr13 14023464 14023826 -87849343 - AluSx SINE Alu 0 352 1 30 27 0 0 chr13 14023927 14023964 -87849205 + AT_rich Low_complexity Low_complexity 1 37 0 191 301 24 36 chr13 14024363 14024446 -87848723 - MIR SINE MIR -48 214 133 2146 108 24 0 chr13 14024475 14024770 -87848399 - AluSg SINE Alu -8 302 1 197 320 100 61 chr13 14025107 14025338 -87847831 - MIR SINE MIR -17 245 6 2043 136 10 0 chr13 14025665 14025960 -87847209 + AluSx SINE Alu 3 300 -12 453 363 25 6 chr13 14027813 14027970 -87845199 + MIR3 SINE MIR 17 176 -32 184 271 42 0 chr13 14029590 14029638 -87843531 + L3b LINE CR1 1423 1472 -111 414 0 0 0 chr13 14031289 14031335 -87841834 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 68 0 0 chr13 14031465 14031509 -87841660 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 14031556 14031577 -87841592 + AT_rich Low_complexity Low_complexity 1 21 0 618 245 47 52 chr13 14032039 14032191 -87840978 - MER20 DNA MER1_type -8 211 59 1948 161 0 7 chr13 14032191 14032495 -87840674 + AluJb SINE Alu 1 302 -10 618 245 47 52 chr13 14032495 14032554 -87840615 - MER20 DNA MER1_type -160 59 1 241 209 30 15 chr13 14032722 14032789 -87840380 + Charlie7 DNA MER1_type 34 101 -2511 180 77 0 0 chr13 14032922 14032948 -87840221 + (CATATA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr13 14034080 14034108 -87839061 + AT_rich Low_complexity Low_complexity 1 28 0 1732 185 3 0 chr13 14034325 14034623 -87838546 + AluJo SINE Alu 3 301 -11 180 265 68 77 chr13 14034947 14035064 -87838105 - MIR SINE MIR -71 191 76 193 292 250 0 chr13 14035078 14035174 -87837995 - L2 LINE L2 -16 3256 3137 1938 119 4 8 chr13 14035188 14035456 -87837713 + AluSx SINE Alu 3 269 -43 310 27 0 0 chr13 14036485 14036522 -87836647 - PABL_A-int LTR ERV1 -3312 1703 1667 301 229 8 115 chr13 14036627 14036749 -87836420 - L1MC4 LINE L1 -1339 6703 6595 297 0 0 0 chr13 14037208 14037241 -87835928 + (TA)n Simple_repeat Simple_repeat 1 33 0 497 262 55 18 chr13 14037498 14037662 -87835507 - L2 LINE L2 -4 3309 3140 664 288 41 0 chr13 14037737 14037956 -87835213 - LTR16A LTR ERVL -166 284 57 859 315 60 10 chr13 14037979 14038456 -87834713 - L2 LINE L2 -159 3154 2644 412 195 9 80 chr13 14038632 14038745 -87834424 - MIR SINE MIR -106 156 52 6114 229 58 71 chr13 14038860 14041309 -87831860 - L1MEc LINE L1 -1689 4693 2347 3827 89 0 6 chr13 14041309 14041823 -87831346 - MER9 LTR ERVK 0 511 1 6114 229 58 71 chr13 14041823 14042268 -87830901 - L1MEc LINE L1 -4035 2347 1898 673 111 0 0 chr13 14042406 14042505 -87830664 + L1PA8 LINE L1 6074 6172 0 1023 268 57 16 chr13 14042541 14042907 -87830262 - L1MEc LINE L1 -4551 1833 1453 761 134 56 0 chr13 14042931 14043073 -87830096 - L1MA9 LINE L1 -2 6310 6161 2379 142 48 5 chr13 14043073 14043468 -87829701 - MSTB LTR MaLR -7 419 8 2102 144 39 23 chr13 14043480 14043868 -87829301 - L1MA9 LINE L1 -139 6173 5780 267 208 17 33 chr13 14043870 14043990 -87829179 + (CATATA)n Simple_repeat Simple_repeat 5 122 0 2218 145 25 23 chr13 14044024 14044316 -87828853 - L1MA9 LINE L1 -512 5779 5484 2816 16 0 0 chr13 14044316 14044623 -87828546 - AluYa5 SINE Alu -4 307 1 2218 145 25 23 chr13 14044623 14044724 -87828445 - L1MA9 LINE L1 -807 5484 5385 1035 190 12 40 chr13 14044828 14044885 -87828284 + L1MC4a LINE L1 7038 7095 -713 2408 69 3 31 chr13 14044885 14045204 -87827965 + AluSp SINE Alu 1 310 -3 1035 190 12 40 chr13 14045204 14045399 -87827770 + L1MC4a LINE L1 7095 7283 -525 578 260 123 67 chr13 14045409 14045782 -87827387 + MER20B DNA MER1_type 36 429 -354 708 233 52 13 chr13 14045808 14046040 -87827129 + MER20B DNA MER1_type 499 739 -44 1926 211 12 5 chr13 14046042 14046618 -87826551 + L1M3 LINE L1 4891 5471 -709 3488 168 33 7 chr13 14046627 14047325 -87825844 - L1MB3 LINE L1 -1 6418 5703 388 184 61 0 chr13 14047327 14047425 -87825744 - L1MB3 LINE L1 -1635 4747 4644 * 1318 145 21 34 chr13 14047424 14047684 -87825485 - L1M3 LINE L1 -716 5464 5202 2025 116 46 17 chr13 14047684 14047986 -87825183 - AluSx SINE Alu -1 311 1 1318 145 21 34 chr13 14047986 14048158 -87825011 - L1M3 LINE L1 -978 5202 5041 1900 128 39 3 chr13 14048158 14048493 -87824676 - L1MA8 LINE L1 -5 6286 5940 1318 145 21 34 chr13 14048493 14048513 -87824656 - L1M3 LINE L1 -1139 5041 5022 2011 168 5 36 chr13 14048515 14048655 -87824514 - LTR44 LTR ERV1 -114 405 262 2376 74 0 19 chr13 14048655 14048967 -87824202 + AluY SINE Alu 1 306 -5 2011 168 5 36 chr13 14048967 14049244 -87823925 - LTR44 LTR ERV1 -257 262 1 1046 247 23 9 chr13 14049245 14049589 -87823580 - L1MB3 LINE L1 -3688 2694 2346 5359 194 120 21 chr13 14049733 14051144 -87822025 - L1MB3 LINE L1 -4605 1779 230 2315 179 7 11 chr13 14051153 14051690 -87821479 + L1MB5 LINE L1 5518 6119 -55 300 167 0 0 chr13 14051786 14051846 -87821323 + L1MB5 LINE L1 6115 6174 0 641 132 0 0 chr13 14051903 14052009 -87821160 + L1MA4 LINE L1 6189 6294 -6 2615 22 38 0 chr13 14052209 14052522 -87820647 + L1PA4 LINE L1 5828 6152 -3 6763 72 3 2 chr13 14054241 14055825 -87817344 + L1PA7 LINE L1 4558 6143 -11 263 208 42 0 chr13 14056140 14056188 -87816981 - MIR SINE MIR -64 144 95 4336 51 0 0 chr13 14056325 14056858 -87816311 - L1PA5 LINE L1 0 6154 5622 336 323 126 12 chr13 14056863 14057030 -87816139 - MIR SINE MIR -56 206 21 256 237 18 26 chr13 14057706 14057820 -87815349 + L1MC/D LINE L1 5792 5904 -1904 210 305 221 0 chr13 14058765 14058860 -87814309 - MIR SINE MIR -71 137 22 2022 109 0 18 chr13 14059154 14059464 -87813705 - AluSg SINE Alu 0 305 1 755 306 69 34 chr13 14060711 14061119 -87812050 - ERVL LTR ERVL -430 5334 4913 514 306 0 6 chr13 14061135 14061295 -87811874 - ERVL LTR ERVL -1557 4207 4049 373 289 74 110 chr13 14061481 14061872 -87811297 - LTR67 LTR ERVL -179 378 2 198 0 0 0 chr13 14062539 14062561 -87810608 + (TA)n Simple_repeat Simple_repeat 1 22 0 288 387 29 7 chr13 14062700 14062837 -87810332 - MIR SINE MIR -66 142 3 202 277 24 60 chr13 14062837 14062874 -87810295 + L2 LINE L2 3272 3305 -8 2787 10 0 0 chr13 14062992 14063297 -87809872 + AluYa5 SINE Alu 1 305 -6 1546 199 104 12 chr13 14063727 14064150 -87809019 - MLT1C LTR MaLR 0 467 6 1009 215 12 4 chr13 14064710 14064961 -87808208 + L1M4 LINE L1 3996 4248 -1898 1593 161 25 0 chr13 14064988 14065274 -87807895 - MER2 DNA MER2_type 0 345 53 17823 126 12 91 chr13 14065274 14067596 -87805573 + L1P3 LINE L1 32 1976 -4485 2253 98 3 0 chr13 14067596 14067891 -87805278 - AluY SINE Alu -15 296 1 17823 126 12 91 chr13 14067891 14070028 -87803141 + L1P3 LINE L1 1976 4280 -2181 1998 66 3 0 chr13 14070027 14070314 -87802855 + L1P LINE L1 5257 5544 -917 * 468 193 26 0 chr13 14070307 14070421 -87802748 - L1MC3 LINE L1 -204 7581 7465 * 317 102 0 0 chr13 14070420 14070469 -87802700 - L1M1 LINE L1 -480 5825 5777 * 3282 67 0 0 chr13 14070469 14070889 -87802280 - L1PA7 LINE L1 -6 6148 5729 370 160 53 75 chr13 14070889 14070983 -87802186 + L1M3c LINE L1 1395 1486 -4655 577 139 0 0 chr13 14070988 14071067 -87802102 - AluS SINE Alu -234 79 1 296 292 46 0 chr13 14071173 14071303 -87801866 + L1M4 LINE L1 5142 5277 -869 2247 62 9 3 chr13 14071305 14071653 -87801516 - L1PA7 LINE L1 -2 6152 5644 495 17 0 0 chr13 14071636 14071696 -87801473 - L1P2 LINE L1 -353 5801 5742 * 538 60 13 1 chr13 14071696 14071783 -87801386 - L1M1 LINE L1 -504 5787 5701 378 327 68 15 chr13 14071776 14072042 -87801127 - L1M3f LINE L1 -5033 295 16 * 400 210 30 0 chr13 14072069 14072169 -87801000 + L1MC3 LINE L1 7368 7470 -315 1872 279 49 3 chr13 14072431 14073063 -87800106 + L1M3b LINE L1 2097 2757 -4739 1338 148 12 121 chr13 14073085 14073423 -87799746 - AluSx SINE Alu 0 302 2 720 213 29 33 chr13 14073424 14073697 -87799472 + L1M3b LINE L1 3341 3612 -3953 1116 161 97 13 chr13 14075164 14075462 -87797707 - MER33 DNA MER1_type -1 323 1 209 356 94 19 chr13 14075547 14075707 -87797462 + MIR SINE MIR 34 205 -57 216 0 0 0 chr13 14077029 14077053 -87796116 + (T)n Simple_repeat Simple_repeat 1 24 0 423 311 149 45 chr13 14077717 14077784 -87795385 + L2 LINE L2 2581 2640 -632 1113 233 122 34 chr13 14077784 14078201 -87794968 - MSTB2 LTR MaLR -3 454 1 423 311 149 45 chr13 14078201 14078760 -87794409 + L2 LINE L2 2640 3272 0 483 256 56 42 chr13 14080106 14080304 -87792865 + MIR3 SINE MIR 20 206 -33 328 358 17 6 chr13 14080888 14081064 -87792105 + L3 LINE CR1 1289 1466 -111 375 261 212 6 chr13 14081436 14081601 -87791568 + MIR SINE MIR 2 200 -62 229 282 23 69 chr13 14081652 14081783 -87791386 - MIR SINE MIR -41 221 97 252 264 56 14 chr13 14081953 14082025 -87791144 + L2 LINE L2 3234 3308 -5 195 42 0 0 chr13 14082817 14082841 -87790328 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 691 323 183 19 chr13 14082915 14083609 -87789560 + L2 LINE L2 472 1279 -2035 188 275 100 38 chr13 14083622 14083702 -87789467 + L2 LINE L2 1383 1467 -1847 879 296 136 34 chr13 14083872 14084275 -87788894 + L3 LINE CR1 492 981 -596 591 73 0 0 chr13 14084275 14084357 -87788812 + L1PA8 LINE L1 6077 6158 -14 879 296 136 34 chr13 14084357 14084572 -87788597 + L3 LINE CR1 981 1173 -404 439 246 11 109 chr13 14084687 14084870 -87788299 + MIR SINE MIR 95 259 -3 767 205 126 40 chr13 14085597 14085947 -87787222 - MSTC LTR MaLR -3 425 12 3722 126 48 3 chr13 14086039 14086644 -87786525 + L1PB4 LINE L1 5522 6153 -3 197 269 65 65 chr13 14086662 14086755 -87786414 + L2 LINE L2 1697 1789 -1525 227 336 26 9 chr13 14086923 14087036 -87786133 + L2 LINE L2 1803 1917 -1397 292 154 308 0 chr13 14087103 14087207 -87785962 - L1MA9 LINE L1 0 6312 6177 252 164 16 49 chr13 14087500 14087561 -87785608 + MLT1J LTR MaLR 232 290 -221 607 107 89 0 chr13 14088064 14088176 -87784993 - L1MCa LINE L1 -4756 1670 1549 * 1862 186 72 62 chr13 14088167 14088679 -87784490 - L1MCa LINE L1 -5901 525 9 259 277 88 140 chr13 14088685 14089199 -87783970 + L2 LINE L2 2547 3029 -243 634 249 29 0 chr13 14089516 14089721 -87783448 - L1ME4a LINE L1 -278 5843 5633 4972 71 7 5 chr13 14089759 14090432 -87782737 - L1PA7 LINE L1 -3 6151 5477 1706 181 13 50 chr13 14090533 14090914 -87782255 - MER41C LTR ERV1 -187 367 1 8929 158 17 11 chr13 14090914 14092544 -87780625 - MER41C-int LTR ERV1 0 7756 6117 1047 205 57 84 chr13 14092772 14093226 -87779943 + MER39 LTR ERV1 67 703 -4 38 22 0 0 chr13 14093580 14093625 -87779544 + AT_rich Low_complexity Low_complexity 1 45 0 2161 268 3 10 chr13 14093744 14094363 -87778806 - HERVL-B3 LTR ERVL -5039 615 1 1971 196 69 37 chr13 14094363 14094827 -87778342 - MLT2B3 LTR ERVL 0 554 76 370 183 0 0 chr13 14094925 14094996 -87778173 - MLT2B3 LTR ERVL -483 71 1 2556 134 60 0 chr13 14096038 14096440 -87776729 + MSTB LTR MaLR 1 426 0 2273 72 0 10 chr13 14098542 14098847 -87774322 - L1PA5 LINE L1 -1 6153 5852 6777 59 5 6 chr13 14099367 14100255 -87772914 + L1PA8 LINE L1 5284 6170 -2 21 0 0 0 chr13 14100896 14100917 -87772252 + AT_rich Low_complexity Low_complexity 1 21 0 2060 151 0 0 chr13 14100923 14101221 -87771948 + AluSx SINE Alu 1 298 -14 501 204 0 76 chr13 14101976 14102108 -87771061 + MLT1E LTR MaLR 1 122 -471 * 748 196 33 7 chr13 14102088 14102241 -87770928 + Tigger3(Golem) DNA MER2_type 2873 3029 0 561 228 73 0 chr13 14102241 14102363 -87770806 - MER2 DNA MER2_type -214 131 1 311 294 0 0 chr13 14102367 14102459 -87770710 - L1M4 LINE L1 -1119 5027 4936 283 253 61 78 chr13 14102805 14103050 -87770119 + L1M4 LINE L1 1307 1547 -4837 3490 209 53 48 chr13 14103171 14103660 -87769509 + L1M4 LINE L1 4122 4607 -1775 1537 163 48 0 chr13 14103660 14103912 -87769257 - AluJo SINE Alu -22 290 27 3490 209 53 48 chr13 14103912 14104559 -87768610 + L1M4 LINE L1 4607 5264 -1118 1647 142 83 10 chr13 14105515 14105697 -87767472 - AluSg SINE Alu 0 310 98 549 0 0 0 chr13 14105697 14105758 -87767411 + (TG)n Simple_repeat Simple_repeat 2 62 0 1647 142 83 10 chr13 14105758 14105864 -87767305 - AluSg SINE Alu -212 98 1 268 351 163 21 chr13 14106126 14106684 -87766485 + L2 LINE L2 2248 2884 -430 2217 51 0 48 chr13 14108391 14108686 -87764483 + AluY SINE Alu 15 295 -16 271 265 0 0 chr13 14108686 14108754 -87764415 - MLT1I LTR MaLR -244 165 98 660 111 0 0 chr13 14109065 14109155 -87764014 - AluSq SINE Alu -73 240 151 675 291 98 22 chr13 14109405 14110219 -87762950 - L1MEd LINE L1 -870 1620 665 1519 180 74 18 chr13 14110761 14111045 -87762124 + AluJo SINE Alu 3 302 -10 24 53 0 0 chr13 14115035 14115073 -87758096 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 14115127 14115148 -87758021 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 14115907 14115928 -87757241 + AT_rich Low_complexity Low_complexity 1 21 0 2058 122 24 7 chr13 14117553 14117847 -87755322 + AluSx SINE Alu 1 299 -13 605 260 130 21 chr13 14118579 14118864 -87754305 + MER46C DNA MER2_type 2 317 -21 2216 119 0 3 chr13 14119247 14119542 -87753627 + AluSx SINE Alu 1 294 -18 238 363 26 9 chr13 14120304 14120417 -87752752 + MIR3 SINE MIR 9 123 -85 361 276 64 32 chr13 14120449 14120605 -87752564 - MER5A DNA MER1_type -28 161 1 592 244 62 43 chr13 14122188 14122446 -87750723 + L1MDa LINE L1 1396 1658 -4882 471 291 12 6 chr13 14122519 14122684 -87750485 + L1ME2 LINE L1 5998 6163 -1 335 282 35 101 chr13 14122706 14122933 -87750236 + L1MC4 LINE L1 7822 8033 -9 2256 116 0 3 chr13 14123093 14123404 -87749765 + AluSg SINE Alu 1 310 0 287 173 111 0 chr13 14125050 14125131 -87748038 - L1MB2 LINE L1 0 6171 6082 1503 277 44 36 chr13 14127539 14128184 -87744985 - L1ME3A LINE L1 -337 5833 5181 1945 114 3 55 chr13 14128184 14128491 -87744678 + AluSc SINE Alu 1 291 -18 1503 277 44 36 chr13 14128491 14128688 -87744481 - L1ME3A LINE L1 -989 5181 4987 1329 276 131 13 chr13 14128723 14129516 -87743653 - L1ME3A LINE L1 -1296 4850 3964 395 310 84 53 chr13 14130062 14130385 -87742784 - L2 LINE L2 -1229 2085 1753 2131 124 0 7 chr13 14130491 14130782 -87742387 + AluSq SINE Alu 1 289 -24 199 196 54 54 chr13 14132345 14132401 -87740768 + L2 LINE L2 3217 3272 0 2206 121 0 0 chr13 14133732 14134030 -87739139 + AluSx SINE Alu 1 298 -14 759 276 27 0 chr13 14134480 14134665 -87738504 - MIR SINE MIR -26 236 47 326 262 105 17 chr13 14134704 14134876 -87738293 - MER112 DNA MER1_type -14 246 60 183 203 0 0 chr13 14134886 14134950 -87738219 + (TG)n Simple_repeat Simple_repeat 2 65 0 2077 132 10 0 chr13 14136105 14136400 -87736769 - AluSx SINE Alu -12 300 3 208 320 100 61 chr13 14136727 14136958 -87736211 + MIR SINE MIR 6 245 -17 2168 108 24 0 chr13 14137295 14137590 -87735579 + AluSg SINE Alu 1 302 -8 192 301 24 36 chr13 14137619 14137702 -87735467 + MIR SINE MIR 133 214 -48 30 27 0 0 chr13 14138101 14138138 -87735031 + AT_rich Low_complexity Low_complexity 1 37 0 2182 92 3 33 chr13 14138239 14138544 -87734625 + AluSq SINE Alu 1 296 -17 640 258 185 53 chr13 14138575 14138859 -87734310 - L2 LINE L2 0 3313 3068 639 0 0 0 chr13 14138859 14138930 -87734239 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 640 258 185 53 chr13 14138930 14139112 -87734057 - L2 LINE L2 -245 3068 2791 303 331 27 20 chr13 14139307 14139455 -87733714 + L2 LINE L2 2917 3065 -207 270 0 0 0 chr13 14139557 14139587 -87733582 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2221 88 0 7 chr13 14139589 14139874 -87733295 - AluSq SINE Alu -30 283 1 199 292 250 0 chr13 14139886 14139982 -87733187 + L2 LINE L2 3137 3256 -16 180 265 68 77 chr13 14139996 14140113 -87733056 + MIR SINE MIR 76 191 -71 1751 185 3 0 chr13 14140437 14140735 -87732434 - AluJo SINE Alu -11 301 3 21 36 0 0 chr13 14140952 14140980 -87732189 + AT_rich Low_complexity Low_complexity 1 28 0 180 77 0 0 chr13 14142112 14142138 -87731031 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 794 226 14 42 chr13 14142506 14142565 -87730604 + MER20 DNA MER1_type 1 60 -159 2005 158 0 7 chr13 14142565 14142869 -87730300 - AluJb SINE Alu -10 302 1 794 226 14 42 chr13 14142869 14143026 -87730143 + MER20 DNA MER1_type 60 211 -8 21 0 0 0 chr13 14143485 14143506 -87729663 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 14143553 14143597 -87729572 + AT_rich Low_complexity Low_complexity 1 44 0 414 0 0 0 chr13 14143727 14143773 -87729396 + (CA)n Simple_repeat Simple_repeat 1 46 0 182 271 42 0 chr13 14145424 14145472 -87727697 - L3b LINE CR1 -111 1472 1423 451 363 25 6 chr13 14147092 14147249 -87725920 - MIR3 SINE MIR -32 176 17 284 290 91 53 chr13 14147921 14148092 -87725077 - MIR SINE MIR -67 141 9 460 254 107 54 chr13 14148513 14148737 -87724432 - L2 LINE L2 0 3313 3078 1015 355 178 11 chr13 14148786 14149841 -87723328 - L3 LINE CR1 -225 1352 122 1386 192 39 42 chr13 14150710 14150992 -87722177 + MER1B DNA MER1_type 1 283 -2429 1873 163 13 16 chr13 14150992 14151305 -87721864 + AluSx SINE Alu 1 312 0 1386 192 39 42 chr13 14151305 14151330 -87721839 + MER1B DNA MER1_type 283 307 -32 287 173 111 0 chr13 14152950 14153031 -87720138 - L1MB2 LINE L1 0 6171 6082 858 159 0 25 chr13 14155052 14155209 -87717960 - MER20 DNA MER1_type -66 153 1 1032 52 29 29 chr13 14155521 14155695 -87717474 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 1802 176 6 16 chr13 14155729 14156042 -87717127 - AluJb SINE Alu -2 310 1 314 285 90 35 chr13 14156044 14156188 -87716981 + MIR SINE MIR 94 245 -17 1918 107 0 0 chr13 14158610 14158863 -87714306 - AluSx SINE Alu -13 299 47 333 333 81 16 chr13 14158869 14158992 -87714177 + L2 LINE L2 3139 3269 -3 22 35 0 0 chr13 14159326 14159355 -87713814 + AT_rich Low_complexity Low_complexity 1 29 0 683 227 53 0 chr13 14160285 14160435 -87712734 - MER5A DNA MER1_type 0 189 32 217 301 163 39 chr13 14160493 14160646 -87712523 + MIR SINE MIR 20 191 -71 406 330 153 5 chr13 14160662 14160877 -87712292 + MIR SINE MIR 10 256 -6 226 322 17 0 chr13 14163075 14163134 -87710035 - L2 LINE L2 -10 3262 3203 2077 116 0 42 chr13 14163277 14163610 -87709559 - AluSq SINE Alu 0 313 1 430 349 57 6 chr13 14164550 14164725 -87708444 - MER5A DNA MER1_type -5 184 1 24 53 0 0 chr13 14166906 14166944 -87706225 + AT_rich Low_complexity Low_complexity 1 38 0 2126 137 0 3 chr13 14167111 14167424 -87705745 - AluSx SINE Alu 0 312 1 234 310 28 0 chr13 14167456 14167527 -87705642 - L2 LINE L2 -3 3269 3197 26 30 0 0 chr13 14168050 14168083 -87705086 + AT_rich Low_complexity Low_complexity 1 33 0 783 290 131 11 chr13 14170014 14170456 -87702713 - L2 LINE L2 -8 3305 2811 224 200 60 0 chr13 14171069 14171119 -87702050 + MIR SINE MIR 96 148 -114 401 0 20 0 chr13 14173844 14173893 -87699276 + (CA)n Simple_repeat Simple_repeat 2 51 0 386 336 77 65 chr13 14173899 14174316 -87698853 - L2 LINE L2 0 3272 2851 186 71 0 0 chr13 14174372 14174400 -87698769 + (CA)n Simple_repeat Simple_repeat 1 28 0 430 191 40 32 chr13 14174500 14174626 -87698543 - L1MC3 LINE L1 -8 7777 7651 2138 125 0 0 chr13 14174637 14174933 -87698236 - AluSx SINE Alu -16 296 1 21 57 0 0 chr13 14175396 14175431 -87697738 + AT_rich Low_complexity Low_complexity 1 35 0 2427 26 0 0 chr13 14175522 14175794 -87697375 - AluY SINE Alu -1 310 39 40 37 0 0 chr13 14175870 14175924 -87697245 + AT_rich Low_complexity Low_complexity 1 54 0 1985 132 55 17 chr13 14176272 14176620 -87696549 + MER46B DNA MER2_type 1 236 0 241 339 66 25 chr13 14177186 14177307 -87695862 + MER5B DNA MER1_type 51 176 -2 180 365 58 0 chr13 14177588 14177692 -87695477 + L2 LINE L2 3156 3265 -7 2099 116 0 11 chr13 14178714 14178998 -87694171 - AluSx SINE Alu -31 281 1 233 346 176 0 chr13 14179081 14179217 -87693952 + MIR3 SINE MIR 38 197 -11 525 165 18 9 chr13 14179268 14179377 -87693792 - MLT1B LTR MaLR -76 314 205 2197 91 0 7 chr13 14179799 14180085 -87693084 + AluY SINE Alu 28 311 0 256 158 0 0 chr13 14180108 14180146 -87693023 + 5S rRNA rRNA 1 38 -83 346 290 0 35 chr13 14180408 14180577 -87692592 + A-rich Low_complexity Low_complexity 2 164 0 2495 76 0 0 chr13 14184995 14185299 -87687870 - AluY SINE Alu -7 304 1 269 348 109 0 chr13 14185889 14185981 -87687188 + MIR SINE MIR 38 139 -69 383 311 67 21 chr13 14186594 14186877 -87686292 + L2 LINE L2 1579 1874 -1440 289 94 19 19 chr13 14186888 14186941 -87686228 + MST-int LTR MaLR 1334 1386 -265 219 370 58 22 chr13 14186963 14187241 -87685928 + L2 LINE L2 1918 2205 -1109 469 221 28 142 chr13 14187307 14187379 -87685790 - Charlie7 DNA MER1_type -452 2160 2081 1730 159 3 10 chr13 14187379 14187668 -87685501 + AluJb SINE Alu 1 287 -25 2319 101 0 3 chr13 14187675 14187973 -87685196 + AluSq SINE Alu 1 297 -16 469 221 28 142 chr13 14187973 14188145 -87685024 - Charlie7 DNA MER1_type -537 2075 1937 180 111 0 0 chr13 14188694 14188721 -87684448 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2131 178 45 21 chr13 14188814 14189236 -87683933 + MSTB1 LTR MaLR 1 432 0 7452 210 33 16 chr13 14189236 14190859 -87682310 + MSTB1-int LTR MaLR 1 1651 0 2294 174 30 16 chr13 14190859 14191285 -87681884 + MSTB1 LTR MaLR 1 432 0 482 249 59 63 chr13 14192124 14192361 -87680808 - L2 LINE L2 0 3313 3078 22 0 0 0 chr13 14192443 14192465 -87680704 + AT_rich Low_complexity Low_complexity 1 22 0 1884 167 3 13 chr13 14192649 14192961 -87680208 - AluSx SINE Alu -3 309 1 218 294 15 0 chr13 14192997 14193065 -87680104 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 332 296 10 0 chr13 14193268 14193366 -87679803 + L1MEd LINE L1 657 755 -5364 3134 239 63 26 chr13 14193550 14196197 -87676972 + L1M4 LINE L1 1 3572 -3534 688 167 21 7 chr13 14196200 14196344 -87676825 + L1MA9 LINE L1 6167 6312 0 360 257 71 0 chr13 14196346 14196486 -87676683 + L1MEd LINE L1 908 1057 -5062 500 349 67 21 chr13 14196549 14196833 -87676336 + L1M4 LINE L1 4988 5284 -1822 302 198 74 58 chr13 14196845 14196959 -87676210 + L1M4 LINE L1 5317 5435 -1671 683 227 0 0 chr13 14196959 14197091 -87676078 + FLAM_C SINE Alu 2 133 0 443 321 30 57 chr13 14197118 14197283 -87675886 + L1M4 LINE L1 5546 5703 -1403 2069 97 7 39 chr13 14197283 14197592 -87675577 + AluSx SINE Alu 9 307 -5 443 321 30 57 chr13 14197592 14197688 -87675481 + L1M4 LINE L1 5703 5800 -1306 1123 199 16 29 chr13 14197805 14198121 -87675048 + L1ME LINE L1 568 879 -5191 1116 252 128 43 chr13 14198121 14198581 -87674588 - MLT1D LTR MaLR 0 505 7 673 250 66 48 chr13 14198584 14198916 -87674253 + L1ME LINE L1 868 1205 -4875 537 291 12 6 chr13 14198978 14199143 -87674026 + L1ME2 LINE L1 5998 6163 -1 236 286 57 9 chr13 14199287 14199392 -87673777 + L1MC4 LINE L1 7924 8033 -9 2376 97 0 3 chr13 14199552 14199860 -87673309 + AluSg SINE Alu 1 307 -3 243 0 0 0 chr13 14199860 14199887 -87673282 + (TA)n Simple_repeat Simple_repeat 1 27 0 993 134 13 0 chr13 14199915 14200064 -87673105 + AluSc SINE Alu 139 289 -20 2061 181 15 0 chr13 14200297 14200639 -87672530 - MER7A DNA MER2_type 0 346 2 245 370 0 12 chr13 14201964 14202045 -87671124 - MIR3 SINE MIR -115 93 14 332 206 0 0 chr13 14202179 14202242 -87670927 + L2 LINE L2 3251 3313 0 3390 94 32 2 chr13 14203022 14203491 -87669678 + MER41A LTR ERV1 72 554 0 609 240 135 21 chr13 14203634 14203826 -87669343 + MLT1C LTR MaLR 220 433 -34 260 229 292 42 chr13 14203898 14204042 -87669127 + MER5A DNA MER1_type 10 189 0 739 226 35 48 chr13 14204472 14204702 -87668467 + LTR16A LTR ERVL 209 435 -15 331 295 42 76 chr13 14204773 14204972 -87668197 + MIR SINE MIR 32 222 -40 2520 72 0 0 chr13 14205371 14205676 -87667493 + AluY SINE Alu 1 305 -6 21 57 0 0 chr13 14205707 14205742 -87667427 + AT_rich Low_complexity Low_complexity 1 35 0 2996 156 126 16 chr13 14205913 14206470 -87666699 + LTR26E LTR ERV1 1 618 -4 24 0 0 0 chr13 14209047 14209071 -87664098 + AT_rich Low_complexity Low_complexity 1 24 0 2229 90 7 0 chr13 14209074 14209362 -87663807 + AluSg SINE Alu 1 290 -20 22 35 0 0 chr13 14209467 14209496 -87663673 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 14209688 14209714 -87663455 + AT_rich Low_complexity Low_complexity 1 26 0 1837 150 0 31 chr13 14209849 14210171 -87662998 - AluSx SINE Alu 0 313 1 1409 181 100 15 chr13 14210173 14210443 -87662726 - AluJo SINE Alu -19 293 1 2256 106 0 3 chr13 14210930 14211233 -87661936 + AluSq SINE Alu 1 302 -11 2297 82 0 3 chr13 14211243 14211568 -87661601 + AluY SINE Alu 1 324 0 944 190 0 6 chr13 14212727 14212890 -87660279 + MLT1A2 LTR MaLR 1 162 -212 799 223 23 95 chr13 14212905 14213236 -87659933 + MER77 LTR ERV1 375 729 -7 936 234 62 96 chr13 14213251 14213846 -87659323 + L1MC5 LINE L1 6928 7502 -459 2342 101 0 7 chr13 14213846 14214153 -87659016 + AluSc SINE Alu 1 305 -4 272 200 153 88 chr13 14214271 14214441 -87658728 + L1ME3A LINE L1 5959 6139 -31 1323 203 44 20 chr13 14214462 14214757 -87658412 - AluJo SINE Alu -10 302 1 4604 10 6 0 chr13 14214767 14215258 -87657911 - L1PA2 LINE L1 0 6155 5662 243 343 116 7 chr13 14215258 14215397 -87657772 - L3 LINE CR1 -729 848 691 494 179 0 0 chr13 14215455 14215539 -87657630 + L1ME2 LINE L1 6045 6128 -36 413 278 20 40 chr13 14215618 14215817 -87657352 + MLT1J LTR MaLR 263 442 -8 2193 111 19 3 chr13 14215866 14216173 -87656996 + AluSx SINE Alu 1 312 0 762 122 0 32 chr13 14216185 14216424 -87656745 + AluSx SINE Alu 1 300 -10 325 336 62 0 chr13 14216577 14216705 -87656464 - L3 LINE CR1 -1009 568 433 718 283 78 27 chr13 14216731 14217170 -87655999 - MLT1J LTR MaLR -21 429 1 275 354 62 22 chr13 14217260 14217438 -87655731 - L3 LINE CR1 -1290 287 103 2315 106 0 0 chr13 14217597 14217890 -87655279 - AluSq SINE Alu -20 293 1 1081 194 133 5 chr13 14218418 14218629 -87654540 + MER8 DNA MER2_type 1 238 -1 22 0 0 0 chr13 14218933 14218955 -87654214 + AT_rich Low_complexity Low_complexity 1 22 0 193 133 0 0 chr13 14220233 14220263 -87652906 - L2 LINE L2 -7 3306 3277 5403 97 13 49 chr13 14220354 14220539 -87652630 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2211 121 0 0 chr13 14220539 14220836 -87652333 - AluSx SINE Alu -15 297 1 5403 97 13 49 chr13 14220836 14221149 -87652020 - Tigger4(Zombi) DNA MER2_type -190 2541 2218 2141 131 3 13 chr13 14221149 14221461 -87651708 + AluSx SINE Alu 1 309 -3 5403 97 13 49 chr13 14221461 14221631 -87651538 - Tigger4(Zombi) DNA MER2_type -513 2218 2097 2240 104 0 3 chr13 14221631 14221930 -87651239 - AluSc SINE Alu -11 298 1 5403 97 13 49 chr13 14221930 14222114 -87651055 - Tigger4(Zombi) DNA MER2_type -634 2097 1908 9527 106 37 81 chr13 14222134 14222824 -87650345 - Tigger4(Zombi) DNA MER2_type -1140 1591 872 858 80 0 9 chr13 14222824 14222937 -87650232 + AluSg/x SINE Alu 190 301 -11 9527 106 37 81 chr13 14222937 14223462 -87649707 - Tigger4(Zombi) DNA MER2_type -1859 872 349 186 103 0 0 chr13 14223462 14223491 -87649678 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9527 106 37 81 chr13 14223491 14223826 -87649343 - Tigger4(Zombi) DNA MER2_type -2382 349 1 233 363 20 20 chr13 14224199 14224301 -87648868 + MIR SINE MIR 22 123 -85 201 323 77 0 chr13 14224679 14224744 -87648425 + L2 LINE L2 3138 3207 -65 683 135 0 0 chr13 14224900 14224996 -87648173 - AluJb SINE Alu -20 292 197 2224 99 3 0 chr13 14225010 14225304 -87647865 - AluSg SINE Alu -15 295 1 1142 153 77 0 chr13 14225310 14225532 -87647637 - L1MB7 LINE L1 -1 6183 5945 264 283 163 0 chr13 14225656 14225748 -87647421 + MIR3 SINE MIR 75 181 -27 331 273 135 93 chr13 14226209 14226253 -87646916 - L1M2 LINE L1 -5578 1271 1230 193 29 59 0 chr13 14226253 14226287 -87646882 + (CAGCG)n Simple_repeat Simple_repeat 3 38 0 331 273 135 93 chr13 14226287 14226627 -87646542 - L1M2 LINE L1 -5619 1230 871 528 286 99 19 chr13 14227698 14227911 -87645258 - MIR SINE MIR -12 250 21 183 80 0 0 chr13 14228737 14228762 -87644407 + (TG)n Simple_repeat Simple_repeat 2 26 0 2733 254 35 14 chr13 14229350 14230064 -87643105 - HsTC2c DNA MER2_type 0 729 1 394 264 0 85 chr13 14230075 14230276 -87642893 + L2 LINE L2 3130 3313 0 2452 174 37 28 chr13 14231450 14231996 -87641173 - MER74A LTR ERVL 0 558 8 2493 66 0 3 chr13 14232327 14232630 -87640539 + AluY SINE Alu 1 302 -9 963 102 15 0 chr13 14232632 14232769 -87640400 + AluY SINE Alu 170 308 -3 297 0 0 0 chr13 14232769 14232802 -87640367 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 229 16 0 chr13 14234124 14234185 -87638984 + L2 LINE L2 3244 3305 -8 2163 113 0 10 chr13 14235545 14235847 -87637322 + AluSx SINE Alu 1 299 -13 580 274 50 11 chr13 14236042 14236221 -87636948 - MIR SINE MIR -71 191 6 219 218 51 13 chr13 14238509 14238587 -87634582 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr13 14239409 14239430 -87633739 + AT_rich Low_complexity Low_complexity 1 21 0 201 350 0 0 chr13 14239877 14239937 -87633232 + CT-rich Low_complexity Low_complexity 2 61 0 405 0 0 0 chr13 14242225 14242270 -87630899 + (TG)n Simple_repeat Simple_repeat 2 46 0 5167 48 0 3 chr13 14242990 14243611 -87629558 + L1PA6 LINE L1 5414 6032 -122 209 284 15 30 chr13 14243901 14243968 -87629201 + L2 LINE L2 3184 3249 -23 * 455 242 58 0 chr13 14243959 14244079 -87629090 + MIR SINE MIR 115 241 -21 2249 95 0 7 chr13 14244179 14244475 -87628694 - AluSg SINE Alu -1 309 16 333 0 0 0 chr13 14245097 14245134 -87628035 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 31 0 0 chr13 14245924 14245956 -87627213 + AT_rich Low_complexity Low_complexity 1 32 0 609 14 0 0 chr13 14246793 14246863 -87626306 + (GA)n Simple_repeat Simple_repeat 1 70 0 434 254 30 85 chr13 14247700 14247745 -87625424 - MER112 DNA MER1_type -32 228 182 1968 151 7 0 chr13 14247745 14248043 -87625126 - AluSx SINE Alu -12 300 1 434 254 30 85 chr13 14248043 14248233 -87624936 - MER112 DNA MER1_type -78 182 6 590 225 283 5 chr13 14248892 14249083 -87624086 + MIR SINE MIR 19 262 0 231 265 265 8 chr13 14249100 14249217 -87623952 - L2 LINE L2 -1 3271 3125 2424 145 54 2 chr13 14249900 14250306 -87622863 - MSTB1 LTR MaLR 0 432 6 183 167 0 0 chr13 14251619 14251661 -87621508 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr13 14253569 14253601 -87619568 + AT_rich Low_complexity Low_complexity 1 32 0 252 0 0 0 chr13 14254994 14255022 -87618147 + (TG)n Simple_repeat Simple_repeat 2 29 0 253 303 138 11 chr13 14255997 14256185 -87616984 - MIR SINE MIR -4 258 47 2279 114 3 0 chr13 14257028 14257325 -87615844 - AluSq SINE Alu -15 298 1 25 0 0 0 chr13 14257934 14257959 -87615210 + AT_rich Low_complexity Low_complexity 1 25 0 1029 201 66 3 chr13 14259075 14259256 -87613913 - MER33 DNA MER1_type -2272 313 106 1793 141 57 37 chr13 14259256 14259554 -87613615 + AluSg SINE Alu 1 304 -6 1029 201 66 3 chr13 14259554 14259660 -87613509 - MER33 DNA MER1_type -2479 106 8 464 246 291 0 chr13 14259675 14259919 -87613250 - MER102a DNA MER1_type -15 315 1 240 271 34 0 chr13 14260225 14260284 -87612885 + L2 LINE L2 3156 3216 -56 3877 141 22 6 chr13 14260325 14260997 -87612172 + L1MB3 LINE L1 5499 6181 -2 540 268 69 57 chr13 14261991 14262286 -87610883 + L1ME4a LINE L1 4957 5268 -910 2085 117 26 61 chr13 14262286 14262593 -87610576 + THE1B LTR MaLR 1 294 -70 2158 88 17 7 chr13 14262593 14262888 -87610281 + AluSg SINE Alu 3 300 -10 2085 117 26 61 chr13 14262888 14262957 -87610212 + THE1B LTR MaLR 294 364 0 540 268 69 57 chr13 14262957 14263121 -87610048 + L1ME4a LINE L1 5268 5429 -749 964 286 53 26 chr13 14263213 14263779 -87609390 + L1ME4a LINE L1 5540 6120 -1 189 278 42 0 chr13 14263827 14263899 -87609270 + L2 LINE L2 2357 2431 -883 252 0 0 0 chr13 14264218 14264246 -87608923 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 323 308 117 8 chr13 14264246 14264366 -87608803 - L2 LINE L2 -13 3259 3127 541 292 36 18 chr13 14264615 14264783 -87608386 - MIR SINE MIR -17 245 75 239 288 72 65 chr13 14264789 14264942 -87608227 + L2 LINE L2 3159 3312 -1 459 305 8 0 chr13 14265946 14266064 -87607105 - MIR SINE MIR -127 135 17 220 180 33 16 chr13 14266872 14266933 -87606236 + CT-rich Low_complexity Low_complexity 2 63 0 2074 143 0 0 chr13 14268587 14268873 -87604296 - AluSx SINE Alu -26 286 1 1800 125 40 68 chr13 14268901 14268972 -87604197 - MER2 DNA MER2_type 0 344 273 180 0 0 0 chr13 14268972 14268992 -87604177 + (TA)n Simple_repeat Simple_repeat 2 21 0 2164 89 0 4 chr13 14268992 14269263 -87603906 - AluY SINE Alu -41 270 1 1800 125 40 68 chr13 14269263 14269543 -87603626 - MER2 DNA MER2_type -69 275 2 267 203 36 65 chr13 14269690 14269743 -87603426 - MER112 DNA MER1_type -61 199 146 2133 118 0 14 chr13 14269743 14270039 -87603130 + AluSx SINE Alu 1 292 -20 267 203 36 65 chr13 14270039 14270123 -87603046 - MER112 DNA MER1_type -114 146 66 243 0 0 0 chr13 14270717 14270744 -87602425 + (T)n Simple_repeat Simple_repeat 1 27 0 256 294 118 0 chr13 14271501 14271603 -87601566 + MIR SINE MIR 30 143 -65 2408 82 0 0 chr13 14271788 14272093 -87601076 + AluY SINE Alu 1 305 -6 28 0 0 0 chr13 14272778 14272806 -87600363 + AT_rich Low_complexity Low_complexity 1 28 0 2257 103 10 0 chr13 14273343 14273634 -87599535 + AluSg SINE Alu 1 294 -16 219 269 60 0 chr13 14273933 14274000 -87599169 - L2 LINE L2 0 3313 3243 387 308 96 58 chr13 14275029 14275237 -87597932 + MIR SINE MIR 46 261 -1 1316 170 19 8 chr13 14276258 14276523 -87596646 - L1MA4 LINE L1 -4 6296 6029 1852 101 0 41 chr13 14276611 14276878 -87596291 - AluSx SINE Alu -56 256 1 1867 168 166 9 chr13 14277017 14277452 -87595717 - MLT1D LTR MaLR -2 503 1 695 304 32 12 chr13 14278520 14278778 -87594391 - MIR SINE MIR 0 262 2 568 233 134 12 chr13 14278844 14279016 -87594153 - MIR SINE MIR -51 211 19 205 303 90 66 chr13 14279087 14279209 -87593960 - L2 LINE L2 -38 3234 3110 2270 118 0 0 chr13 14279392 14279698 -87593471 - AluSx SINE Alu -6 306 1 1168 178 50 4 chr13 14280188 14280429 -87592740 - MLT1D LTR MaLR 0 505 254 247 297 14 0 chr13 14281968 14282042 -87591127 + MER117 DNA MER1_type 119 193 -4 370 286 137 44 chr13 14282094 14282321 -87590848 + MIR SINE MIR 3 250 -12 24 77 0 0 chr13 14283984 14284036 -87589133 + AT_rich Low_complexity Low_complexity 1 52 0 373 285 56 28 chr13 14284384 14284528 -87588641 - MIR3 SINE MIR -11 197 50 324 346 46 8 chr13 14284622 14284752 -87588417 + MIR SINE MIR 10 144 -118 875 151 50 0 chr13 14284946 14285113 -87588056 + FRAM SINE Alu 1 174 0 1738 298 89 66 chr13 14286284 14287339 -87585830 + L2 LINE L2 1925 3063 -250 259 71 24 0 chr13 14287339 14287381 -87585788 + MADE1 DNA Mariner 1 43 -37 1738 298 89 66 chr13 14287381 14287638 -87585531 + L2 LINE L2 3063 3313 0 1687 186 25 0 chr13 14290138 14290423 -87582746 + AluJo SINE Alu 2 293 -19 347 256 113 77 chr13 14291237 14291511 -87581658 - L1ME4a LINE L1 -24 6097 5814 381 288 8 32 chr13 14291515 14291640 -87581529 + MER5A DNA MER1_type 25 146 -43 234 191 0 0 chr13 14291977 14292024 -87581145 + CT-rich Low_complexity Low_complexity 3 49 0 629 323 87 39 chr13 14292711 14293343 -87579826 - L2 LINE L2 -30 3242 2589 213 259 0 19 chr13 14293474 14293528 -87579641 - L2 LINE L2 -92 3221 3169 866 115 54 11 chr13 14293549 14293816 -87579353 + L1MB3 LINE L1 5706 6183 0 559 297 136 25 chr13 14293929 14294436 -87578733 - L2 LINE L2 -160 3153 2593 226 315 14 0 chr13 14294574 14294647 -87578522 + tRNA-Glu-GAG tRNA tRNA 2 75 0 251 252 185 17 chr13 14294674 14294793 -87578376 + MIR SINE MIR 16 154 -108 767 267 142 44 chr13 14295114 14295678 -87577491 + L1M4 LINE L1 4371 4879 -1267 261 0 0 0 chr13 14295678 14295707 -87577462 + (TG)n Simple_repeat Simple_repeat 2 30 0 767 267 142 44 chr13 14295707 14295767 -87577402 + L1M4 LINE L1 4879 4932 -1214 4750 148 42 6 chr13 14295767 14296638 -87576531 - MER4D LTR ERV1 0 903 1 767 267 142 44 chr13 14296638 14296895 -87576274 + L1M4 LINE L1 4932 5339 -807 750 184 0 43 chr13 14297570 14297733 -87575436 - L2 LINE L2 0 3313 3158 269 244 278 0 chr13 14297744 14297834 -87575335 + MER5A DNA MER1_type 73 187 -2 317 317 48 21 chr13 14298519 14298664 -87574505 + L2 LINE L2 3155 3303 -10 25 0 0 0 chr13 14300421 14300446 -87572723 + AT_rich Low_complexity Low_complexity 1 25 0 289 274 186 0 chr13 14300767 14300869 -87572300 - L2 LINE L2 -5 3267 3147 1921 140 10 19 chr13 14300956 14301270 -87571899 - AluJb SINE Alu -1 311 1 306 279 134 96 chr13 14301294 14301378 -87571791 + L2 LINE L2 1993 2072 -1242 2307 99 6 6 chr13 14301378 14301690 -87571479 - AluSx SINE Alu 0 312 1 306 279 134 96 chr13 14301690 14302262 -87570907 + L2 LINE L2 2072 2674 -640 196 238 0 0 chr13 14302576 14302618 -87570551 - L2 LINE L2 -5 3308 3267 633 272 52 49 chr13 14302807 14303112 -87570057 + LTR16C LTR ERVL 186 491 0 374 256 45 75 chr13 14303340 14303473 -87569696 - L1M LINE L1 -700 5421 5293 425 316 67 27 chr13 14303531 14303756 -87569413 - L1M4 LINE L1 -859 5287 5054 205 200 0 22 chr13 14303924 14303969 -87569200 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 445 211 9 0 chr13 14303987 14304101 -87569068 - L1MC4 LINE L1 -7 8035 7921 955 186 63 94 chr13 14304182 14304597 -87568572 - L1MC4 LINE L1 -143 7899 7498 1162 131 20 50 chr13 14354949 14355148 -87518021 - AluJo SINE Alu -119 193 1 24 32 0 0 chr13 14355151 14355182 -87517987 + AT_rich Low_complexity Low_complexity 1 31 0 2324 77 14 0 chr13 14355225 14355512 -87517657 + AluSg SINE Alu 1 291 -19 799 154 15 15 chr13 14356530 14356660 -87516509 - FLAM_C SINE Alu -2 131 2 632 258 155 17 chr13 14356817 14357108 -87516061 + L1ME LINE L1 5399 5729 -392 193 133 0 0 chr13 14357930 14357960 -87515209 - L2 LINE L2 -7 3306 3277 5403 97 13 49 chr13 14358051 14358236 -87514933 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2211 121 0 0 chr13 14358236 14358533 -87514636 - AluSx SINE Alu -15 297 1 5403 97 13 49 chr13 14358533 14358846 -87514323 - Tigger4(Zombi) DNA MER2_type -190 2541 2218 2141 131 3 13 chr13 14358846 14359158 -87514011 + AluSx SINE Alu 1 309 -3 5403 97 13 49 chr13 14359158 14359328 -87513841 - Tigger4(Zombi) DNA MER2_type -513 2218 2097 2263 97 0 3 chr13 14359328 14359626 -87513543 - AluSc SINE Alu -12 297 1 5403 97 13 49 chr13 14359626 14359810 -87513359 - Tigger4(Zombi) DNA MER2_type -634 2097 1908 9521 106 37 82 chr13 14359830 14360520 -87512649 - Tigger4(Zombi) DNA MER2_type -1140 1591 872 865 79 0 9 chr13 14360520 14360634 -87512535 + AluSg/x SINE Alu 188 300 -10 9521 106 37 82 chr13 14360634 14361159 -87512010 - Tigger4(Zombi) DNA MER2_type -1859 872 349 186 103 0 0 chr13 14361159 14361188 -87511981 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9521 106 37 82 chr13 14361188 14361523 -87511646 - Tigger4(Zombi) DNA MER2_type -2382 349 1 233 363 20 20 chr13 14361896 14361998 -87511171 + MIR SINE MIR 22 123 -85 201 323 77 0 chr13 14362376 14362441 -87510728 + L2 LINE L2 3138 3207 -65 683 135 0 0 chr13 14362597 14362693 -87510476 - AluJb SINE Alu -20 292 197 2198 102 3 0 chr13 14362707 14363001 -87510168 - AluSg SINE Alu -15 295 1 1142 153 77 0 chr13 14363007 14363229 -87509940 - L1MB7 LINE L1 -1 6183 5945 264 283 163 0 chr13 14363353 14363445 -87509724 + MIR3 SINE MIR 75 181 -27 321 294 91 95 chr13 14363764 14363950 -87509219 - L1M2 LINE L1 -5509 1340 1155 193 29 59 0 chr13 14363950 14363984 -87509185 + (CAGCG)n Simple_repeat Simple_repeat 3 38 0 321 294 91 95 chr13 14363984 14364335 -87508834 - L1M2 LINE L1 -5694 1155 805 528 286 99 19 chr13 14365395 14365608 -87507561 - MIR SINE MIR -12 250 21 183 80 0 0 chr13 14366430 14366455 -87506714 + (TG)n Simple_repeat Simple_repeat 2 26 0 2714 255 35 14 chr13 14367043 14367757 -87505412 - HsTC2c DNA MER2_type 0 729 1 394 264 0 85 chr13 14367768 14367969 -87505200 + L2 LINE L2 3130 3313 0 2434 178 37 28 chr13 14369143 14369689 -87503480 - MER74A LTR ERVL 0 558 8 2502 66 0 3 chr13 14370020 14370324 -87502845 + AluY SINE Alu 1 303 -8 936 100 15 0 chr13 14370326 14370456 -87502713 + AluY SINE Alu 170 301 -10 261 0 0 0 chr13 14370456 14370485 -87502684 + (CA)n Simple_repeat Simple_repeat 2 30 0 261 229 16 0 chr13 14371806 14371867 -87501302 + L2 LINE L2 3244 3305 -8 2212 109 0 10 chr13 14373227 14373530 -87499639 + AluSx SINE Alu 1 300 -12 580 274 50 11 chr13 14373725 14373904 -87499265 - MIR SINE MIR -71 191 6 219 218 51 13 chr13 14376196 14376274 -87496895 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr13 14377096 14377117 -87496052 + AT_rich Low_complexity Low_complexity 1 21 0 201 350 0 0 chr13 14377552 14377612 -87495557 + CT-rich Low_complexity Low_complexity 2 61 0 405 0 0 0 chr13 14379902 14379947 -87493222 + (TG)n Simple_repeat Simple_repeat 2 46 0 5162 48 0 3 chr13 14380667 14381288 -87491881 + L1PA6 LINE L1 5414 6032 -122 209 284 15 30 chr13 14381578 14381645 -87491524 + L2 LINE L2 3184 3249 -23 * 455 242 58 0 chr13 14381636 14381756 -87491413 + MIR SINE MIR 115 241 -21 2249 95 0 7 chr13 14381856 14382152 -87491017 - AluSg SINE Alu -1 309 16 315 0 0 0 chr13 14382777 14382812 -87490357 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 31 0 0 chr13 14383603 14383635 -87489534 + AT_rich Low_complexity Low_complexity 1 32 0 360 0 0 0 chr13 14384472 14384512 -87488657 + (GA)n Simple_repeat Simple_repeat 1 40 0 434 254 30 85 chr13 14385349 14385394 -87487775 - MER112 DNA MER1_type -32 228 182 1946 154 7 0 chr13 14385394 14385692 -87487477 - AluSx SINE Alu -12 300 1 434 254 30 85 chr13 14385692 14385882 -87487287 - MER112 DNA MER1_type -78 182 6 582 225 305 0 chr13 14386541 14386728 -87486441 + MIR SINE MIR 19 262 0 231 265 265 8 chr13 14386745 14386862 -87486307 - L2 LINE L2 -1 3271 3125 2377 150 54 2 chr13 14387545 14387951 -87485218 - MSTB1 LTR MaLR 0 432 6 183 167 0 0 chr13 14389264 14389306 -87483863 + (CAGA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr13 14391215 14391247 -87481922 + AT_rich Low_complexity Low_complexity 1 32 0 324 0 0 0 chr13 14392640 14392676 -87480493 + (TG)n Simple_repeat Simple_repeat 2 37 0 238 303 138 11 chr13 14393651 14393839 -87479330 - MIR SINE MIR -4 258 47 2282 111 3 0 chr13 14394682 14394979 -87478190 - AluSq SINE Alu -15 298 1 25 0 0 0 chr13 14395589 14395614 -87477555 + AT_rich Low_complexity Low_complexity 1 25 0 1188 195 70 3 chr13 14396730 14396910 -87476259 - MER33 DNA MER1_type -2272 313 106 1786 141 57 34 chr13 14396910 14397208 -87475961 + AluSg SINE Alu 1 305 -5 1188 195 70 3 chr13 14397208 14397314 -87475855 - MER33 DNA MER1_type -2479 106 8 566 246 291 0 chr13 14397329 14397573 -87475596 - MER102a DNA MER1_type -15 315 1 240 271 34 0 chr13 14397879 14397938 -87475231 + L2 LINE L2 3156 3216 -56 4222 141 22 6 chr13 14397979 14398651 -87474518 + L1MB3 LINE L1 5499 6181 -2 236 293 9 9 chr13 14399645 14399751 -87473418 + L1ME4a LINE L1 4957 5062 -1084 2293 111 26 61 chr13 14399940 14400247 -87472922 + THE1B LTR MaLR 1 294 -70 2195 87 17 7 chr13 14400247 14400545 -87472624 + AluSg SINE Alu 3 303 -7 2293 111 26 61 chr13 14400545 14400614 -87472555 + THE1B LTR MaLR 294 364 0 1147 286 89 49 chr13 14400614 14401436 -87471733 + L1ME4a LINE L1 5266 6120 -1 183 278 42 0 chr13 14401484 14401556 -87471613 + L2 LINE L2 2357 2431 -883 252 0 0 0 chr13 14401875 14401903 -87471266 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 317 308 117 8 chr13 14401903 14402023 -87471146 - L2 LINE L2 -13 3259 3127 534 292 36 18 chr13 14402272 14402440 -87470729 - MIR SINE MIR -17 245 75 239 288 72 65 chr13 14402446 14402599 -87470570 + L2 LINE L2 3159 3312 -1 459 305 8 0 chr13 14403603 14403721 -87469448 - MIR SINE MIR -127 135 17 220 180 33 16 chr13 14404529 14404590 -87468579 + CT-rich Low_complexity Low_complexity 2 63 0 2074 143 0 0 chr13 14406245 14406531 -87466638 - AluSx SINE Alu -26 286 1 1875 122 31 60 chr13 14406559 14406625 -87466544 - MER2 DNA MER2_type 0 344 278 774 105 0 0 chr13 14406625 14406739 -87466430 + (TA)n Simple_repeat Simple_repeat 2 115 0 2442 83 0 3 chr13 14406739 14407039 -87466130 - AluY SINE Alu -12 299 1 1875 122 31 60 chr13 14407039 14407324 -87465845 - MER2 DNA MER2_type -64 280 2 267 203 36 65 chr13 14407471 14407524 -87465645 - MER112 DNA MER1_type -61 199 146 2133 118 0 14 chr13 14407524 14407820 -87465349 + AluSx SINE Alu 1 292 -20 267 203 36 65 chr13 14407820 14407904 -87465265 - MER112 DNA MER1_type -114 146 66 216 0 0 0 chr13 14408502 14408526 -87464643 + (T)n Simple_repeat Simple_repeat 1 24 0 256 294 118 0 chr13 14409283 14409385 -87463784 + MIR SINE MIR 30 143 -65 2408 82 0 0 chr13 14409570 14409875 -87463294 + AluY SINE Alu 1 305 -6 28 0 0 0 chr13 14410560 14410588 -87462581 + AT_rich Low_complexity Low_complexity 1 28 0 2257 103 10 0 chr13 14411125 14411416 -87461753 + AluSg SINE Alu 1 294 -16 238 265 44 0 chr13 14411715 14411783 -87461386 - L2 LINE L2 0 3313 3243 387 308 96 58 chr13 14412806 14413014 -87460155 + MIR SINE MIR 46 261 -1 1318 170 19 8 chr13 14414035 14414300 -87458869 - L1MA4 LINE L1 -4 6296 6029 1852 101 0 41 chr13 14414387 14414654 -87458515 - AluSx SINE Alu -56 256 1 1867 168 166 9 chr13 14414793 14415228 -87457941 - MLT1D LTR MaLR -2 503 1 695 304 32 12 chr13 14416296 14416554 -87456615 - MIR SINE MIR 0 262 2 568 233 134 12 chr13 14416620 14416792 -87456377 - MIR SINE MIR -51 211 19 205 303 90 66 chr13 14416863 14416985 -87456184 - L2 LINE L2 -38 3234 3110 2302 114 0 0 chr13 14417168 14417476 -87455693 - AluSx SINE Alu -4 308 1 1149 183 50 4 chr13 14417966 14418207 -87454962 - MLT1D LTR MaLR 0 505 254 251 308 13 0 chr13 14419746 14419824 -87453345 + MER117 DNA MER1_type 119 197 0 370 286 137 44 chr13 14419872 14420099 -87453070 + MIR SINE MIR 3 250 -12 24 77 0 0 chr13 14421762 14421814 -87451355 + AT_rich Low_complexity Low_complexity 1 52 0 352 292 56 28 chr13 14422162 14422306 -87450863 - MIR3 SINE MIR -11 197 50 324 346 46 8 chr13 14422400 14422530 -87450639 + MIR SINE MIR 10 144 -118 875 151 50 0 chr13 14422724 14422891 -87450278 + FRAM SINE Alu 1 174 0 1729 298 89 66 chr13 14424064 14425119 -87448050 + L2 LINE L2 1925 3063 -250 259 71 24 0 chr13 14425119 14425161 -87448008 + MADE1 DNA Mariner 1 43 -37 1729 298 89 66 chr13 14425161 14425418 -87447751 + L2 LINE L2 3063 3313 0 1687 186 25 0 chr13 14427920 14428205 -87444964 + AluJo SINE Alu 2 293 -19 347 256 113 77 chr13 14429019 14429293 -87443876 - L1ME4a LINE L1 -24 6097 5814 381 288 8 32 chr13 14429297 14429422 -87443747 + MER5A DNA MER1_type 25 146 -43 234 191 0 0 chr13 14429762 14429809 -87443360 + CT-rich Low_complexity Low_complexity 3 49 0 633 330 84 34 chr13 14430496 14431127 -87442042 - L2 LINE L2 -30 3242 2589 213 259 0 19 chr13 14431258 14431312 -87441857 - L2 LINE L2 -92 3221 3169 866 112 58 11 chr13 14431333 14431600 -87441569 + L1MB3 LINE L1 5706 6183 0 559 297 136 25 chr13 14431713 14432220 -87440949 - L2 LINE L2 -160 3153 2593 226 315 14 0 chr13 14432358 14432431 -87440738 + tRNA-Glu-GAG tRNA tRNA 2 75 0 248 252 185 17 chr13 14432458 14432577 -87440592 + MIR SINE MIR 16 154 -108 773 267 142 44 chr13 14432898 14433462 -87439707 + L1M4 LINE L1 4371 4879 -1267 225 0 0 0 chr13 14433462 14433487 -87439682 + (TG)n Simple_repeat Simple_repeat 2 26 0 773 267 142 44 chr13 14433487 14433547 -87439622 + L1M4 LINE L1 4879 4932 -1214 4727 150 41 6 chr13 14433547 14434419 -87438750 - MER4D LTR ERV1 0 903 1 773 267 142 44 chr13 14434419 14434676 -87438493 + L1M4 LINE L1 4932 5339 -807 750 184 0 43 chr13 14435351 14435514 -87437655 - L2 LINE L2 0 3313 3158 269 244 278 0 chr13 14435525 14435615 -87437554 + MER5A DNA MER1_type 73 187 -2 317 317 48 21 chr13 14436300 14436445 -87436724 + L2 LINE L2 3155 3303 -10 25 0 0 0 chr13 14438203 14438228 -87434941 + AT_rich Low_complexity Low_complexity 1 25 0 289 274 186 0 chr13 14438549 14438651 -87434518 - L2 LINE L2 -5 3267 3147 1921 140 10 19 chr13 14438738 14439052 -87434117 - AluJb SINE Alu -1 311 1 324 287 126 90 chr13 14439076 14439161 -87434008 + L2 LINE L2 1993 2073 -1241 2307 99 6 6 chr13 14439161 14439473 -87433696 - AluSx SINE Alu 0 312 1 324 287 126 90 chr13 14439473 14440045 -87433124 + L2 LINE L2 2073 2674 -640 196 238 0 0 chr13 14440359 14440401 -87432768 - L2 LINE L2 -5 3308 3267 633 272 52 49 chr13 14440590 14440895 -87432274 + LTR16C LTR ERVL 186 491 0 376 256 45 75 chr13 14441123 14441256 -87431913 - L1M LINE L1 -700 5421 5293 421 273 43 102 chr13 14441322 14441626 -87431543 - L1 LINE L1 -871 5275 4990 205 200 0 22 chr13 14441707 14441752 -87431417 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 1715 194 43 130 chr13 14441770 14442539 -87430630 - L1MC4 LINE L1 -7 8035 7334 323 294 123 48 chr13 14442639 14442932 -87430237 - L1 LINE L1 -1635 4511 4197 333 273 11 57 chr13 14442968 14443144 -87430025 - L1 LINE L1 -2391 3755 3588 300 151 0 19 chr13 14443349 14443402 -87429767 + L1MC4 LINE L1 6652 6703 -1339 2242 82 7 7 chr13 14443521 14443815 -87429354 - AluSx SINE Alu -18 294 1 303 356 88 25 chr13 14444051 14444211 -87428958 - MIR3 SINE MIR -4 204 35 233 328 0 0 chr13 14444976 14445037 -87428132 + (CA)n Simple_repeat Simple_repeat 2 62 0 638 287 0 92 chr13 14445289 14445412 -87427757 - MIR SINE MIR -6 256 168 2514 64 0 6 chr13 14445412 14445725 -87427444 - AluY SINE Alu 0 311 1 638 287 0 92 chr13 14445725 14445862 -87427307 - MIR SINE MIR -94 168 20 242 200 0 0 chr13 14447824 14447864 -87425305 - MIR SINE MIR -5 257 218 383 326 154 40 chr13 14448307 14448788 -87424381 - L2 LINE L2 -556 2758 2223 240 111 0 0 chr13 14448902 14448938 -87424231 + (TG)n Simple_repeat Simple_repeat 2 37 0 1701 145 24 28 chr13 14449419 14449709 -87423460 - AluJo SINE Alu -22 290 2 206 61 0 30 chr13 14449760 14449793 -87423376 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 221 21 48 chr13 14450892 14451037 -87422132 + MER103 DNA DNA 1 141 -25 2079 111 11 0 chr13 14451111 14451390 -87421779 + AluSx SINE Alu 1 282 -30 528 258 40 69 chr13 14451508 14451783 -87421386 + Charlie8 DNA MER1_type 38 1402 -1015 345 281 29 7 chr13 14451889 14452028 -87421141 + L1ME4a LINE L1 5974 6115 -6 30 27 0 0 chr13 14452341 14452378 -87420791 + AT_rich Low_complexity Low_complexity 1 37 0 327 256 135 8 chr13 14452943 14453076 -87420093 + MIR SINE MIR 98 247 -15 204 373 112 26 chr13 14453684 14453917 -87419252 - L3b LINE CR1 -24 1559 1307 21 0 0 0 chr13 14454156 14454177 -87418992 + AT_rich Low_complexity Low_complexity 1 21 0 1848 154 0 13 chr13 14454182 14454481 -87418688 + AluJo SINE Alu 1 295 -17 282 136 76 0 chr13 14454553 14454619 -87418550 - L1MA10 LINE L1 -7 6327 6257 4308 211 95 18 chr13 14454701 14455864 -87417305 - L1ME1 LINE L1 -162 6004 4633 2090 117 20 3 chr13 14455864 14456163 -87417006 - AluSx SINE Alu -4 308 5 4308 211 95 18 chr13 14456163 14456905 -87416264 - L1ME1 LINE L1 -1533 4633 3950 307 361 191 24 chr13 14456957 14457375 -87415794 - L2 LINE L2 -630 2684 2197 227 231 0 0 chr13 14458470 14458509 -87414660 + L2 LINE L2 3216 3254 -18 291 345 60 0 chr13 14458549 14458717 -87414452 - L2 LINE L2 -1220 2094 1917 698 164 78 0 chr13 14459175 14459291 -87413878 + AluJb SINE Alu 1 125 -187 1962 135 0 7 chr13 14459532 14459821 -87413348 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr13 14459870 14459892 -87413277 + AT_rich Low_complexity Low_complexity 1 22 0 346 278 0 0 chr13 14460865 14460962 -87412207 + MIR SINE MIR 166 262 0 207 244 0 0 chr13 14463009 14463054 -87410115 + (CGG)n Simple_repeat Simple_repeat 2 46 0 206 341 52 44 chr13 14464978 14465113 -87408056 + MIR3 SINE MIR 2 137 -71 245 359 70 23 chr13 14465475 14465603 -87407566 - MIR3 SINE MIR -71 137 4 656 329 51 57 chr13 14465849 14466447 -87406722 + L2 LINE L2 2636 3264 -8 296 269 103 0 chr13 14467007 14467085 -87406084 - L2 LINE L2 -2 3311 3226 181 310 17 0 chr13 14467116 14467174 -87405995 + L2 LINE L2 3214 3272 0 29 0 0 0 chr13 14467898 14467927 -87405242 + AT_rich Low_complexity Low_complexity 1 29 0 207 320 39 39 chr13 14468359 14468437 -87404732 + L2 LINE L2 3163 3240 -32 312 299 31 10 chr13 14468674 14468771 -87404398 + MIR SINE MIR 49 147 -115 39 38 0 0 chr13 14469512 14469565 -87403604 + AT_rich Low_complexity Low_complexity 1 53 0 180 0 0 0 chr13 14470555 14470575 -87402594 + (A)n Simple_repeat Simple_repeat 1 20 0 2292 90 10 0 chr13 14471341 14471641 -87401528 + AluSp SINE Alu 1 303 -10 1268 113 0 0 chr13 14471641 14471809 -87401360 + AluSg/x SINE Alu 138 305 -7 228 231 91 118 chr13 14472704 14472890 -87400279 - MER5A DNA MER1_type -2 187 7 2152 152 0 25 chr13 14473262 14473432 -87399737 - L1MA5 LINE L1 0 6300 6127 2393 102 0 0 chr13 14473432 14473737 -87399432 - AluSq SINE Alu -8 305 1 2152 152 0 25 chr13 14473737 14473968 -87399201 - L1MA5 LINE L1 -173 6127 5909 418 209 38 25 chr13 14474723 14474881 -87398288 + GA-rich Low_complexity Low_complexity 3 162 0 2042 132 0 3 chr13 14475156 14475470 -87397699 + AluSx SINE Alu 5 317 0 308 250 42 10 chr13 14476695 14476791 -87396378 - MIR3 SINE MIR 0 208 110 214 315 82 0 chr13 14477377 14477450 -87395719 - MIR SINE MIR -98 164 86 235 229 242 57 chr13 14478789 14478946 -87394223 - MER5A DNA MER1_type -3 186 1 27 0 0 0 chr13 14479359 14479386 -87393783 + AT_rich Low_complexity Low_complexity 1 27 0 210 329 16 121 chr13 14480292 14480541 -87392628 + L2 LINE L2 2963 3185 -87 230 81 27 0 chr13 14480543 14480580 -87392589 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 21 0 0 0 chr13 14480675 14480696 -87392473 + AT_rich Low_complexity Low_complexity 1 21 0 194 211 276 26 chr13 14481787 14481863 -87391306 + MIR SINE MIR 46 140 -68 1493 123 0 0 chr13 14482376 14482611 -87390558 - L1MA2 LINE L1 0 6304 6070 1759 199 3 0 chr13 14483302 14483604 -87389565 - AluJo SINE Alu -9 303 1 292 250 16 0 chr13 14483842 14483906 -87389263 - L2 LINE L2 0 3313 3249 1149 213 50 20 chr13 14483913 14484517 -87388652 - L1M4 LINE L1 -3594 2788 2171 * 1725 214 52 48 chr13 14484512 14484749 -87388420 - L1M4 LINE L1 -4568 1735 1501 2351 103 0 16 chr13 14484749 14485060 -87388109 - AluSg SINE Alu -4 306 1 1725 214 52 48 chr13 14485060 14485470 -87387699 - L1M4 LINE L1 -4802 1501 777 294 333 8 8 chr13 14485953 14486085 -87387084 - L1M4 LINE L1 -6009 304 173 393 262 284 0 chr13 14486412 14486553 -87386616 + MIR SINE MIR 76 256 -6 471 314 52 87 chr13 14488142 14488511 -87384658 + L2 LINE L2 2917 3272 0 457 360 0 0 chr13 14488573 14488737 -87384432 - MIR SINE MIR 0 262 99 21 0 0 0 chr13 14489007 14489028 -87384141 + AT_rich Low_complexity Low_complexity 1 21 0 469 202 0 83 chr13 14489754 14489863 -87383306 + L2 LINE L2 3168 3267 -5 438 271 101 8 chr13 14489869 14489998 -87383171 + MIR SINE MIR 8 148 -114 2237 98 3 3 chr13 14490957 14491252 -87381917 + AluSc SINE Alu 1 295 -14 24 32 0 0 chr13 14491403 14491434 -87381735 + AT_rich Low_complexity Low_complexity 1 31 0 7492 117 58 26 chr13 14491635 14492294 -87380875 + HSMAR2 DNA Mariner 1 638 -664 2341 112 0 0 chr13 14492294 14492606 -87380563 + AluSx SINE Alu 1 312 0 7492 117 58 26 chr13 14492606 14493207 -87379962 + HSMAR2 DNA Mariner 638 1301 -1 28 0 0 0 chr13 14493220 14493248 -87379921 + AT_rich Low_complexity Low_complexity 1 28 0 2338 99 0 6 chr13 14493248 14493262 -87379907 - AluY SINE Alu -1 310 297 590 0 14 0 chr13 14493262 14493332 -87379837 + (TA)n Simple_repeat Simple_repeat 1 71 0 2338 99 0 6 chr13 14493332 14493629 -87379540 - AluY SINE Alu -14 297 1 484 302 47 50 chr13 14493660 14493961 -87379208 - L1MEd LINE L1 -5818 301 2 360 150 0 170 chr13 14494031 14494178 -87378991 - L1MA8 LINE L1 -4 6287 6166 2138 120 0 10 chr13 14494435 14494758 -87378411 + AluSx SINE Alu 1 312 0 355 319 24 30 chr13 14495832 14496001 -87377168 + MIR3 SINE MIR 20 187 -21 232 217 75 142 chr13 14496359 14496465 -87376704 - L2 LINE L2 0 3272 3174 507 335 170 26 chr13 14497479 14497903 -87375266 - L3 LINE CR1 -93 1484 1000 341 266 129 36 chr13 14498010 14498149 -87375020 - L2 LINE L2 -5 3267 3116 348 372 213 12 chr13 14498315 14498737 -87374432 - L3 LINE CR1 -1046 531 25 414 317 104 0 chr13 14498987 14499189 -87373980 + L2 LINE L2 2562 2784 -530 360 242 106 148 chr13 14499314 14499551 -87373618 + L2 LINE L2 2939 3160 -112 1149 167 174 4 chr13 14499551 14499827 -87373342 - MER33 DNA MER1_type -1 323 1 360 242 106 148 chr13 14499827 14499920 -87373249 + L2 LINE L2 3160 3255 -17 304 143 45 62 chr13 14500304 14500356 -87372813 + (TA)n Simple_repeat Simple_repeat 1 52 -58 2477 90 11 8 chr13 14500356 14500710 -87372459 + THE1A LTR MaLR 1 355 0 11754 92 9 4 chr13 14500710 14501206 -87371963 + THE1A-int LTR MaLR 1 493 -1087 2070 112 7 3 chr13 14501206 14501509 -87371660 + AluSq SINE Alu 1 304 -9 11754 92 9 4 chr13 14501509 14502584 -87370585 + THE1A-int LTR MaLR 493 1580 0 2501 88 8 8 chr13 14502584 14502937 -87370232 + THE1A LTR MaLR 1 353 -2 304 143 45 62 chr13 14502937 14502994 -87370175 + (TA)n Simple_repeat Simple_repeat 49 110 0 186 43 0 0 chr13 14504969 14504992 -87368177 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2170 127 3 0 chr13 14505414 14505722 -87367447 - AluSq SINE Alu -4 309 1 4300 118 57 17 chr13 14505727 14506432 -87366737 - L1MA4 LINE L1 -5 6295 5563 233 247 123 41 chr13 14506623 14506696 -87366473 - L2 LINE L2 0 3272 3194 2180 125 3 3 chr13 14506808 14507113 -87366056 - AluSg SINE Alu -5 305 1 2229 168 22 3 chr13 14507149 14507507 -87365662 + MLT1A1 LTR MaLR 1 365 0 2338 88 0 7 chr13 14507534 14507839 -87365330 + AluY SINE Alu 5 307 -4 409 293 58 29 chr13 14508968 14509142 -87364027 - MIR SINE MIR -56 206 28 227 361 13 48 chr13 14509214 14509379 -87363790 + MIR SINE MIR 38 195 -67 3268 147 105 24 chr13 14509458 14509490 -87363679 - L1MB2 LINE L1 -1 6170 6142 1581 186 0 4 chr13 14509490 14509754 -87363415 - AluJb SINE Alu -49 263 1 3268 147 105 24 chr13 14509754 14509765 -87363404 - L1MB2 LINE L1 -29 6142 6133 2091 135 7 0 chr13 14509765 14510061 -87363108 - AluSx SINE Alu -14 298 1 3268 147 105 24 chr13 14510061 14510655 -87362514 - L1MB2 LINE L1 -38 6133 5473 189 0 0 0 chr13 14510655 14510676 -87362493 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3268 147 105 24 chr13 14510676 14510703 -87362466 - L1MB2 LINE L1 -698 5473 5450 180 0 0 0 chr13 14510800 14510820 -87362349 + (TG)n Simple_repeat Simple_repeat 2 21 0 1994 133 0 3 chr13 14510820 14511106 -87362063 - AluSx SINE Alu -27 285 1 648 154 4 0 chr13 14511346 14511466 -87361703 - LTR12 LTR ERV1 0 714 49 332 224 0 0 chr13 14511466 14511542 -87361627 - LTR30 LTR ERV1 -98 624 549 908 61 9 0 chr13 14511544 14511658 -87361511 - LTR12 LTR ERV1 -440 274 160 * 1292 109 18 138 chr13 14511628 14511949 -87361220 - LTR12 LTR ERV1 -475 239 1 1665 274 62 80 chr13 14511995 14512249 -87360920 - L1MEd LINE L1 -5011 1108 851 2296 104 0 10 chr13 14512249 14512558 -87360611 - AluSx SINE Alu -6 306 1 1665 274 62 80 chr13 14512558 14513430 -87359739 - L1MEd LINE L1 -5268 851 2 2383 97 0 0 chr13 14514215 14514523 -87358646 + AluSg SINE Alu 1 308 -2 837 245 92 39 chr13 14514786 14515092 -87358077 - MLT1H LTR MaLR -227 322 1 191 103 26 0 chr13 14515176 14515215 -87357954 + (TA)n Simple_repeat Simple_repeat 1 40 0 198 191 0 0 chr13 14515514 14515556 -87357613 + (TG)n Simple_repeat Simple_repeat 2 43 0 2024 206 130 35 chr13 14515586 14515868 -87357301 - MLT1E2 LTR MaLR -4 622 368 1661 191 40 40 chr13 14515868 14516240 -87356929 - MLT1A2 LTR MaLR 0 374 3 2024 206 130 35 chr13 14516240 14516525 -87356644 - MLT1E2 LTR MaLR -258 368 1 264 59 0 0 chr13 14516546 14516580 -87356589 + (TCTCCC)n Simple_repeat Simple_repeat 1 34 0 7058 59 34 22 chr13 14516581 14518268 -87354901 + SVA Other Other 1 1385 -1 2408 96 0 0 chr13 14519312 14519613 -87353556 - AluSx SINE Alu -11 301 1 27 73 0 0 chr13 14519719 14519774 -87353395 + AT_rich Low_complexity Low_complexity 1 55 0 22 35 0 0 chr13 14520357 14520386 -87352783 + AT_rich Low_complexity Low_complexity 1 29 0 1623 58 10 0 chr13 14520533 14520741 -87352428 + L1P4 LINE L1 5569 5778 -383 2870 94 5 13 chr13 14520775 14521169 -87352000 + L1PA14 LINE L1 5769 6159 -2 275 252 54 27 chr13 14521169 14521274 -87351895 - MIR SINE MIR -134 128 21 1934 270 35 45 chr13 14523389 14524137 -87349032 - MER20B DNA MER1_type -6 777 38 360 267 154 31 chr13 14525460 14525655 -87347514 + MIR SINE MIR 36 254 -8 435 229 181 21 chr13 14525773 14525917 -87347252 + MIR SINE MIR 82 248 -14 346 338 49 29 chr13 14525954 14526158 -87347011 - MIR SINE MIR -48 214 7 1872 154 0 20 chr13 14526228 14526553 -87346616 + AluJo SINE Alu 1 312 0 22 0 0 0 chr13 14527737 14527759 -87345410 + AT_rich Low_complexity Low_complexity 1 22 0 432 325 53 20 chr13 14528030 14528181 -87344988 - L3 LINE CR1 -3 1574 1419 201 208 19 19 chr13 14528306 14528359 -87344810 - L3 LINE CR1 -160 1417 1365 1284 144 47 0 chr13 14528465 14528680 -87344489 - MLT1B LTR MaLR 0 390 166 892 128 0 0 chr13 14528680 14528829 -87344340 - AluSx SINE Alu 0 305 157 847 90 0 9 chr13 14528836 14528947 -87344222 - AluSx SINE Alu -203 110 1 1070 127 24 0 chr13 14528952 14529118 -87344051 - MLT1B LTR MaLR -220 170 1 202 326 78 39 chr13 14529210 14529339 -87343830 - L3 LINE CR1 -602 975 842 448 214 29 43 chr13 14529342 14529482 -87343687 - L2 LINE L2 -54 3259 3122 260 318 40 66 chr13 14529558 14529756 -87343413 - L3 LINE CR1 -757 820 628 315 0 0 0 chr13 14530693 14530728 -87342441 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1201 278 86 12 chr13 14530729 14531136 -87342033 - L2 LINE L2 -16 3297 2861 432 0 0 0 chr13 14531302 14531350 -87341819 + (TG)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr13 14532681 14532703 -87340466 + AT_rich Low_complexity Low_complexity 1 22 0 567 324 143 25 chr13 14532773 14533165 -87340004 - L2 LINE L2 -1 3271 2834 876 356 82 19 chr13 14533246 14534027 -87339142 - L2 LINE L2 -675 2639 1810 337 336 72 67 chr13 14534172 14534517 -87338652 - L2 LINE L2 -16 3256 2910 * 489 308 83 72 chr13 14534490 14534870 -87338299 - L2 LINE L2 -1175 2139 1750 2686 121 62 5 chr13 14534870 14535275 -87337894 - MSTA LTR MaLR 0 428 1 489 308 83 72 chr13 14535275 14535410 -87337759 - L2 LINE L2 -1564 1750 1618 381 70 0 0 chr13 14536111 14536164 -87337005 + (TG)n Simple_repeat Simple_repeat 1 110 0 381 70 0 0 chr13 14536164 14536221 -87336948 + (TG)n Simple_repeat Simple_repeat 2 58 0 240 329 133 7 chr13 14536569 14536712 -87336457 - MIR SINE MIR -6 256 96 3149 210 29 3 chr13 14537031 14537663 -87335506 - L1MB5 LINE L1 -8 6166 5519 598 250 43 67 chr13 14537665 14537873 -87335296 + MER112 DNA MER1_type 17 219 -41 1309 202 24 27 chr13 14537880 14538217 -87334952 + Charlie4a DNA MER1_type 168 503 -5 1327 168 58 70 chr13 14538225 14538553 -87334616 + MER33 DNA MER1_type 1 324 0 27 0 0 0 chr13 14538922 14538949 -87334220 + AT_rich Low_complexity Low_complexity 1 27 0 2359 94 0 0 chr13 14541174 14541472 -87331697 - AluSx SINE Alu -14 298 1 202 121 30 0 chr13 14542115 14542148 -87331021 + CT-rich Low_complexity Low_complexity 2 35 0 296 265 128 17 chr13 14542248 14542365 -87330804 - MIR SINE MIR -69 193 64 2179 113 36 0 chr13 14542415 14542716 -87330453 - AluSq SINE Alu -1 312 1 186 125 31 0 chr13 14543124 14543156 -87330013 + L2 LINE L2 2726 2758 -556 186 204 0 82 chr13 14544291 14544340 -87328829 - L2 LINE L2 0 3313 3269 391 228 0 219 chr13 14544575 14544803 -87328366 - MER91A DNA MER1_type 0 196 19 2308 116 0 0 chr13 14544987 14545298 -87327871 - AluSx SINE Alu -1 311 1 24 0 0 0 chr13 14545353 14545377 -87327792 + AT_rich Low_complexity Low_complexity 1 24 0 525 225 23 16 chr13 14545421 14545550 -87327619 + MIR SINE MIR 74 203 -59 21 0 0 0 chr13 14546315 14546336 -87326833 + AT_rich Low_complexity Low_complexity 1 21 0 2119 116 38 0 chr13 14546564 14546857 -87326312 + AluSx SINE Alu 1 304 -8 636 298 42 17 chr13 14546863 14547101 -87326068 - MIR SINE MIR -5 257 14 472 77 26 13 chr13 14549101 14549179 -87323990 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 21 0 0 0 chr13 14549932 14549953 -87323216 + AT_rich Low_complexity Low_complexity 1 21 0 424 119 179 0 chr13 14550770 14550854 -87322315 - L2 LINE L2 -4 3268 3170 557 233 164 16 chr13 14552049 14552238 -87320931 + MIR SINE MIR 36 252 -10 435 276 73 0 chr13 14553693 14553816 -87319353 + MER94 DNA DNA 2 133 -1 200 163 0 20 chr13 14554102 14554151 -87319018 + CT-rich Low_complexity Low_complexity 2 49 0 363 23 0 0 chr13 14554156 14554200 -87318969 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 114 0 0 chr13 14556572 14556616 -87316553 + (TC)n Simple_repeat Simple_repeat 1 44 0 1906 96 4 0 chr13 14558412 14558663 -87314506 - AluSq SINE Alu -2 311 60 240 200 0 0 chr13 14559292 14559342 -87313827 + GA-rich Low_complexity Low_complexity 3 52 0 511 297 82 22 chr13 14559849 14560081 -87313088 - MLT1L LTR MaLR -362 253 8 2058 138 42 14 chr13 14560104 14560458 -87312711 - THE1B LTR MaLR 0 364 1 184 243 54 0 chr13 14560649 14560686 -87312483 - MIR SINE MIR -185 77 39 683 205 0 0 chr13 14561041 14561158 -87312011 + FLAM_C SINE Alu 1 117 -26 29 0 0 0 chr13 14561162 14561191 -87311978 + AT_rich Low_complexity Low_complexity 1 29 0 326 304 193 19 chr13 14561514 14561721 -87311448 - MIR SINE MIR 0 262 20 204 303 49 37 chr13 14562403 14562565 -87310604 + L2 LINE L2 2511 2674 -640 285 167 0 0 chr13 14564074 14564122 -87309047 + MIR SINE MIR 65 112 -150 207 293 101 20 chr13 14564246 14564345 -87308824 + MIR SINE MIR 156 262 0 2199 122 0 25 chr13 14564680 14565001 -87308168 - AluSq SINE Alu 0 313 1 255 313 73 10 chr13 14566047 14566143 -87307026 - L2 LINE L2 -18 3254 3153 1239 62 31 0 chr13 14566564 14566724 -87306445 - AluY SINE Alu -8 303 139 207 238 0 0 chr13 14568834 14568876 -87304293 - L2 LINE L2 -10 3303 3262 255 368 120 8 chr13 14569177 14569310 -87303859 + MIR SINE MIR 2 149 -113 1237 201 60 3 chr13 14569558 14569907 -87303262 - Charlie5 DNA MER1_type -10 2602 2234 532 194 11 80 chr13 14569916 14569960 -87303209 - MER3 DNA MER1_type 6 168 123 2215 102 3 0 chr13 14569960 14570254 -87302915 + AluSx SINE Alu 1 295 -17 532 194 11 80 chr13 14570254 14570384 -87302785 - MER3 DNA MER1_type -39 123 6 22 0 0 0 chr13 14570389 14570411 -87302758 + AT_rich Low_complexity Low_complexity 1 22 0 763 123 0 16 chr13 14571024 14571146 -87302023 + AluSg/x SINE Alu 189 308 -4 2386 86 0 6 chr13 14571720 14572033 -87301136 + AluY SINE Alu 1 311 0 1788 163 23 7 chr13 14572164 14572471 -87300698 - AluJo SINE Alu 0 312 1 332 304 44 15 chr13 14572575 14572710 -87300459 - MER5B DNA MER1_type 0 178 40 2386 91 0 0 chr13 14573039 14573335 -87299834 + AluSc SINE Alu 1 296 -13 2304 117 0 3 chr13 14574291 14574600 -87298569 - AluSx SINE Alu -4 308 1 2455 72 0 3 chr13 14574806 14575110 -87298059 + AluY SINE Alu 1 303 -8 29 60 0 0 chr13 14575267 14575317 -87297852 + AT_rich Low_complexity Low_complexity 1 50 0 389 274 97 0 chr13 14576063 14576187 -87296982 + MIR SINE MIR 78 213 -49 25 0 0 0 chr13 14576587 14576612 -87296557 + AT_rich Low_complexity Low_complexity 1 25 0 888 165 58 5 chr13 14576674 14576862 -87296307 - L1PB4 LINE L1 -2 6154 5957 205 268 107 0 chr13 14579882 14579938 -87293231 - L2 LINE L2 0 3272 3211 267 119 45 30 chr13 14580029 14580096 -87293073 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 650 228 0 102 chr13 14580558 14580843 -87292326 + MER112 DNA MER1_type 4 259 -1 358 310 52 9 chr13 14581095 14581211 -87291958 - L2 LINE L2 -15 3257 3137 286 287 66 103 chr13 14581472 14581744 -87291425 + L2 LINE L2 3010 3271 -1 1956 141 7 3 chr13 14582443 14582734 -87290435 - AluSq SINE Alu -21 292 1 1751 179 3 14 chr13 14582741 14583032 -87290137 - AluJo SINE Alu -24 288 1 436 279 48 33 chr13 14583036 14583308 -87289861 - L1MC5 LINE L1 -168 7793 7518 351 272 106 61 chr13 14584081 14584261 -87288908 - L2 LINE L2 -10 3262 3075 218 355 47 0 chr13 14584289 14584396 -87288773 + L2 LINE L2 2926 3037 -235 321 311 149 19 chr13 14584785 14584946 -87288223 - MIR3 SINE MIR -11 197 16 587 193 155 0 chr13 14585078 14585239 -87287930 + MER5A DNA MER1_type 1 186 -3 2435 65 3 3 chr13 14586037 14586343 -87286826 - AluY SINE Alu -5 306 1 2206 137 7 29 chr13 14586672 14586847 -87286322 + L1MB1 LINE L1 5749 5926 -242 8765 62 5 1 chr13 14586847 14588777 -87284392 - L1PA6 LINE L1 -5 6149 4218 2206 137 7 29 chr13 14588777 14589009 -87284160 + L1MB1 LINE L1 5926 6147 -21 41 36 0 0 chr13 14589010 14589065 -87284104 + AT_rich Low_complexity Low_complexity 1 55 0 355 283 167 0 chr13 14589110 14589230 -87283939 + MIR SINE MIR 49 188 -74 491 294 23 55 chr13 14590594 14590656 -87282513 + L2 LINE L2 3103 3165 -148 267 114 0 0 chr13 14590656 14590700 -87282469 + (TG)n Simple_repeat Simple_repeat 1 44 0 491 294 23 55 chr13 14590700 14590855 -87282314 + L2 LINE L2 3165 3313 0 355 130 101 0 chr13 14591717 14591786 -87281383 + L1MB3 LINE L1 6106 6181 -2 201 263 26 13 chr13 14594177 14594253 -87278916 + GA-rich Low_complexity Low_complexity 5 81 0 685 259 142 13 chr13 14597423 14597655 -87275514 - MIR SINE MIR 0 262 1 1842 161 0 0 chr13 14598480 14598753 -87274416 - AluSx SINE Alu -39 273 1 1215 294 91 47 chr13 14599750 14601249 -87271920 - L1MEd LINE L1 -812 1678 16 248 329 82 53 chr13 14601454 14601661 -87271508 + L2 LINE L2 2845 3057 -215 246 268 188 0 chr13 14601795 14601907 -87271262 - MER112 DNA MER1_type -97 163 31 255 277 67 42 chr13 14601953 14602000 -87271169 + L2 LINE L2 3151 3195 -77 291 93 0 0 chr13 14602000 14602043 -87271126 + (CA)n Simple_repeat Simple_repeat 2 44 0 255 277 67 42 chr13 14602043 14602114 -87271055 + L2 LINE L2 3195 3272 0 498 251 107 27 chr13 14602591 14602778 -87270391 + MIR SINE MIR 42 243 -19 221 232 111 61 chr13 14603408 14603507 -87269662 + MIR SINE MIR 41 144 -64 21 36 0 0 chr13 14605492 14605520 -87267649 + AT_rich Low_complexity Low_complexity 1 28 0 204 284 171 40 chr13 14606537 14606613 -87266556 - L2 LINE L2 -1168 2146 2081 1521 154 64 57 chr13 14606613 14606911 -87266258 + AluJb SINE Alu 5 304 -8 204 284 171 40 chr13 14606911 14607161 -87266008 - L2 LINE L2 -1233 2081 1777 2420 71 0 10 chr13 14607195 14607506 -87265663 + AluY SINE Alu 1 308 -3 287 290 122 38 chr13 14608928 14609059 -87264110 - MIR SINE MIR -109 153 12 450 113 0 0 chr13 14609192 14609263 -87263906 + L1PB4 LINE L1 6072 6142 -14 1672 209 88 59 chr13 14610129 14610821 -87262348 - L1MC5 LINE L1 -49 7912 7201 7173 104 24 8 chr13 14611348 14612466 -87260703 - L1MA2 LINE L1 0 6304 5170 2276 92 10 0 chr13 14612466 14612771 -87260398 - AluSg SINE Alu -2 308 1 7173 104 24 8 chr13 14612771 14612936 -87260233 - L1MA2 LINE L1 -1134 5170 5009 525 186 11 33 chr13 14613053 14613236 -87259933 + CT-rich Low_complexity Low_complexity 1 179 0 205 282 0 56 chr13 14613544 14613615 -87259554 - L2 LINE L2 -202 3070 3004 2042 109 6 39 chr13 14613642 14613954 -87259215 + AluSx SINE Alu 4 305 -7 2219 104 7 3 chr13 14614482 14614789 -87258380 - AluSx SINE Alu -4 308 1 527 140 93 0 chr13 14614958 14615065 -87258104 + L1MB4 LINE L1 6061 6177 -3 21 0 0 0 chr13 14615068 14615089 -87258080 + AT_rich Low_complexity Low_complexity 1 21 0 229 259 0 35 chr13 14615702 14615760 -87257409 - L2 LINE L2 -253 3060 3005 216 97 0 0 chr13 14616382 14616413 -87256756 + (TA)n Simple_repeat Simple_repeat 1 31 0 276 111 0 0 chr13 14616460 14616505 -87256664 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 14616593 14616621 -87256548 + AT_rich Low_complexity Low_complexity 1 28 0 1767 121 93 0 chr13 14617221 14617507 -87255662 - AluSc SINE Alu 0 310 1 23 33 0 0 chr13 14617537 14617567 -87255602 + AT_rich Low_complexity Low_complexity 1 30 0 4660 142 31 21 chr13 14617633 14617794 -87255375 - L1MA7 LINE L1 -10 6281 6123 1549 224 64 0 chr13 14617794 14618137 -87255032 - MLT1A1 LTR MaLR 0 365 1 4660 142 31 21 chr13 14618137 14618837 -87254332 - L1MA7 LINE L1 -168 6123 5411 317 315 85 24 chr13 14619534 14619699 -87253470 - L2 LINE L2 -5 3308 3134 2351 38 0 14 chr13 14620508 14620801 -87252368 + L1PA4 LINE L1 5866 6154 -1 1631 173 24 10 chr13 14620812 14621101 -87252068 + AluJb SINE Alu 2 294 -18 320 279 12 23 chr13 14621342 14621428 -87251741 + MIR SINE MIR 8 92 -170 467 243 197 0 chr13 14621438 14621590 -87251579 + MER5A DNA MER1_type 8 189 0 2537 109 3 14 chr13 14621783 14622151 -87251018 + THE1B LTR MaLR 1 364 0 1236 214 50 34 chr13 14622239 14622561 -87250608 + MLT1A1 LTR MaLR 1 327 -38 212 222 22 0 chr13 14622827 14622872 -87250297 - MIR SINE MIR -10 252 207 23 0 0 0 chr13 14623173 14623196 -87249973 + AT_rich Low_complexity Low_complexity 1 23 0 194 66 26 79 chr13 14623196 14623272 -87249897 + (TTAAA)n Simple_repeat Simple_repeat 5 76 0 202 129 54 65 chr13 14623276 14623369 -87249800 + (TTATA)n Simple_repeat Simple_repeat 1 92 0 984 252 76 25 chr13 14623560 14623915 -87249254 - MLT1J LTR MaLR -2 509 36 2173 107 40 0 chr13 14624203 14624502 -87248667 + AluSx SINE Alu 1 311 -1 309 284 44 98 chr13 14624702 14624927 -87248242 - L2 LINE L2 -35 3237 3025 200 300 33 121 chr13 14625387 14625601 -87247568 - L2 LINE L2 -217 3055 2869 1622 141 107 50 chr13 14625601 14626004 -87247165 - LTR37A LTR ERV1 0 426 1 200 300 33 121 chr13 14626004 14626062 -87247107 - L2 LINE L2 -403 2869 2807 418 317 63 7 chr13 14626354 14626496 -87246673 - L2 LINE L2 -1 3271 3122 185 381 95 7 chr13 14628080 14628337 -87244832 - L2 LINE L2 -1219 2095 1811 2086 143 0 25 chr13 14628337 14628652 -87244517 + AluSx SINE Alu 4 310 -2 185 381 95 7 chr13 14628652 14628667 -87244502 - L2 LINE L2 -1503 1811 1799 532 230 157 6 chr13 14629425 14629603 -87243566 - MIR SINE MIR -11 251 47 723 172 96 13 chr13 14631321 14631478 -87241691 - L1MD3 LINE L1 0 7995 7826 475 167 33 0 chr13 14631494 14631584 -87241585 - MER21A LTR ERV1 -358 573 481 571 183 0 30 chr13 14631584 14631715 -87241454 - L1MC3 LINE L1 -161 7624 7498 373 242 72 20 chr13 14633006 14633276 -87239893 - L1ME4a LINE L1 -164 5957 5671 1151 248 69 24 chr13 14633305 14633804 -87239365 - L1ME4a LINE L1 -505 5616 4942 423 286 71 24 chr13 14634983 14635151 -87238018 + MIR3 SINE MIR 8 183 -25 26 30 0 0 chr13 14635359 14635392 -87237777 + AT_rich Low_complexity Low_complexity 1 33 0 939 116 52 0 chr13 14635732 14635887 -87237282 - L1MB7 LINE L1 -20 6164 6002 288 285 105 2 chr13 14637267 14637443 -87235726 - MIR SINE MIR -16 246 13 5418 111 9 4 chr13 14637597 14637787 -87235382 - L1PB1 LINE L1 0 6151 5964 2292 113 0 0 chr13 14637787 14638088 -87235081 - AluSg SINE Alu -9 301 1 5418 111 9 4 chr13 14638088 14639220 -87233949 - L1PB1 LINE L1 -187 5964 4841 4424 189 2 12 chr13 14639220 14639290 -87233879 + L1 LINE L1 3859 3928 -2218 2422 82 3 0 chr13 14639290 14639594 -87233575 + AluY SINE Alu 1 305 -6 4424 189 2 12 chr13 14639594 14640446 -87232723 + L1 LINE L1 3928 4772 -1374 2090 100 0 24 chr13 14640944 14641261 -87231908 - AluSx SINE Alu 0 310 1 21 0 0 0 chr13 14642937 14642958 -87230211 + AT_rich Low_complexity Low_complexity 1 21 0 2254 91 0 14 chr13 14644622 14644919 -87228250 + AluSc SINE Alu 3 295 -14 390 239 65 0 chr13 14645915 14646007 -87227162 - MER5A DNA MER1_type 0 189 92 1354 135 23 0 chr13 14646007 14646222 -87226947 - MLT1B LTR MaLR 0 390 171 266 128 0 0 chr13 14646231 14646278 -87226891 + MLT1B LTR MaLR 152 198 -192 588 208 16 0 chr13 14646339 14646464 -87226705 - MLT1B LTR MaLR -263 127 1 356 277 84 54 chr13 14646862 14647028 -87226141 - L1ME3A LINE L1 -8 6162 5992 1963 105 70 14 chr13 14647179 14647464 -87225705 - AluSx SINE Alu -10 302 2 345 24 0 0 chr13 14647572 14647614 -87225555 + (TG)n Simple_repeat Simple_repeat 2 43 0 2347 91 0 0 chr13 14647942 14648240 -87224929 - AluSq SINE Alu -15 298 1 3775 153 20 45 chr13 14649594 14650347 -87222822 + L1MB7 LINE L1 5443 6176 -8 577 261 65 16 chr13 14650356 14650540 -87222629 + MIR SINE MIR 28 220 -42 1930 147 6 16 chr13 14650889 14651203 -87221966 - AluJb SINE Alu -1 311 1 232 25 75 0 chr13 14655239 14655279 -87217890 + T-rich Low_complexity Low_complexity 2 44 0 28 0 0 0 chr13 14657056 14657084 -87216085 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 14657146 14657189 -87215980 + AT_rich Low_complexity Low_complexity 1 43 0 511 249 54 54 chr13 14657573 14657758 -87215411 - L2 LINE L2 -11 3302 3118 438 331 23 17 chr13 14658632 14658807 -87214362 - MER5A DNA MER1_type -13 176 1 635 222 211 31 chr13 14659355 14659549 -87213620 + MIR SINE MIR 12 240 -22 181 257 200 0 chr13 14659932 14660002 -87213167 - L2 LINE L2 -50 3263 3180 262 335 123 33 chr13 14660219 14660431 -87212738 - L2 LINE L2 -474 2840 2610 226 304 0 0 chr13 14660847 14660903 -87212266 + L2 LINE L2 3187 3242 -71 814 258 22 35 chr13 14660930 14661159 -87212010 - MIR SINE MIR -27 235 10 303 302 68 68 chr13 14661378 14661626 -87211543 + L1M4 LINE L1 4600 4847 -1299 320 348 129 11 chr13 14662243 14662599 -87210570 - L2 LINE L2 -456 2858 2461 2938 6 0 0 chr13 14662650 14662967 -87210202 - AluYb8 SINE Alu -1 317 1 2274 97 0 0 chr13 14663447 14663746 -87209423 - AluSg1 SINE Alu 0 309 11 352 300 81 49 chr13 14663753 14663976 -87209193 + L2 LINE L2 3027 3256 -16 209 324 56 28 chr13 14665231 14665339 -87207830 - MIR SINE MIR -80 182 72 269 235 59 0 chr13 14665520 14665588 -87207581 - MIR SINE MIR -7 255 184 354 305 66 13 chr13 14665734 14665885 -87207284 + MIR SINE MIR 53 211 -51 269 188 17 17 chr13 14666130 14666247 -87206922 + (TA)n Simple_repeat Simple_repeat 2 118 0 23 78 0 0 chr13 14666265 14666316 -87206853 + AT_rich Low_complexity Low_complexity 1 51 0 283 236 150 48 chr13 14667571 14667716 -87205453 + MIR SINE MIR 17 166 -67 2289 218 60 22 chr13 14668906 14670835 -87202334 + L1ME1 LINE L1 4125 6334 0 462 234 63 51 chr13 14670874 14671032 -87202137 - MIR SINE MIR -51 211 52 23 0 0 0 chr13 14671528 14671551 -87201618 + AT_rich Low_complexity Low_complexity 1 23 0 256 218 143 113 chr13 14671641 14671774 -87201395 + MIR SINE MIR 113 249 -13 2120 116 24 0 chr13 14673448 14673740 -87199429 + AluSp SINE Alu 1 299 -14 26 64 0 0 chr13 14673921 14673968 -87199201 + AT_rich Low_complexity Low_complexity 1 47 0 239 337 65 0 chr13 14674190 14674282 -87198887 - L2 LINE L2 -12 3301 3204 2196 108 14 0 chr13 14675756 14676052 -87197117 + AluSx SINE Alu 2 301 -11 225 0 0 0 chr13 14676071 14676096 -87197073 + (A)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr13 14676580 14676607 -87196562 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 28 71 0 0 chr13 14676620 14676676 -87196493 + AT_rich Low_complexity Low_complexity 1 56 0 186 333 0 17 chr13 14678174 14678234 -87194935 + MIR SINE MIR 29 87 -121 21 0 0 0 chr13 14678526 14678547 -87194622 + AT_rich Low_complexity Low_complexity 1 21 0 317 213 64 78 chr13 14680499 14680640 -87192529 + MIR SINE MIR 65 203 -59 195 299 31 15 chr13 14682206 14682288 -87190881 - MIR SINE MIR -63 145 84 2763 138 29 7 chr13 14684341 14684784 -87188385 - MLT1C LTR MaLR 0 467 15 1331 182 55 115 chr13 14685139 14685633 -87187536 - MLT2C2 LTR ERVL 0 464 1 242 243 120 35 chr13 14686076 14686191 -87186978 + MIR SINE MIR 30 151 -89 832 278 47 20 chr13 14686489 14686744 -87186425 - MIR SINE MIR 0 262 1 894 156 66 71 chr13 14687066 14687277 -87185892 - MER20 DNA MER1_type -7 212 3 1207 180 43 0 chr13 14687427 14687660 -87185509 + L1MD3 LINE L1 7726 7968 -27 252 0 0 0 chr13 14687664 14687692 -87185477 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2062 127 0 0 chr13 14687694 14687977 -87185192 - AluSx SINE Alu -29 283 1 2146 120 10 3 chr13 14688442 14688750 -87184419 - AluSx SINE Alu -2 310 1 231 104 5 134 chr13 14689163 14689365 -87183804 + (ATGTG)n Simple_repeat Simple_repeat 1 176 0 285 306 0 39 chr13 14689408 14689588 -87183581 + (TATATG)n Simple_repeat Simple_repeat 5 177 0 701 251 29 6 chr13 14691648 14691823 -87181346 - MIR SINE MIR -30 232 54 221 275 30 8 chr13 14692044 14692175 -87180994 + (TA)n Simple_repeat Simple_repeat 2 135 0 217 338 125 6 chr13 14694004 14694164 -87179005 - MIR SINE MIR -21 241 63 1919 136 0 17 chr13 14694505 14694829 -87178340 + AluSx SINE Alu 1 319 0 203 342 83 64 chr13 14695072 14695338 -87177831 - L2 LINE L2 -4 3268 2998 335 389 15 0 chr13 14695848 14695979 -87177190 - L3 LINE CR1 -2 1575 1443 180 403 0 0 chr13 14696404 14696476 -87176693 - MIR SINE MIR -110 152 81 459 0 0 0 chr13 14696710 14696761 -87176408 + (TG)n Simple_repeat Simple_repeat 2 52 0 2391 99 0 0 chr13 14697441 14697753 -87175416 - AluSx SINE Alu 0 312 1 2350 97 0 3 chr13 14698099 14698408 -87174761 - AluSg SINE Alu -2 308 1 2033 103 69 3 chr13 14698534 14698824 -87174345 + AluSx SINE Alu 4 312 0 329 267 47 0 chr13 14698932 14699018 -87174151 + MIR SINE MIR 63 152 -110 199 361 54 39 chr13 14699737 14699867 -87173302 + L2 LINE L2 3133 3264 -8 210 37 0 0 chr13 14699881 14699908 -87173261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2404 76 0 3 chr13 14700714 14701015 -87172154 + AluSc SINE Alu 1 300 -9 974 186 12 0 chr13 14701071 14701243 -87171926 + AluJo SINE Alu 1 174 -138 1114 160 0 17 chr13 14701247 14701428 -87171741 + FRAM SINE Alu 1 176 0 25 51 0 0 chr13 14702912 14702951 -87170218 + AT_rich Low_complexity Low_complexity 1 39 0 1155 266 62 19 chr13 14705045 14705343 -87167826 + L1ME LINE L1 2706 3037 -3109 7739 129 30 9 chr13 14705343 14706614 -87166555 - HSMAR2 DNA Mariner 0 1302 5 1155 266 62 19 chr13 14706614 14706833 -87166336 + L1ME LINE L1 3037 3245 -2901 3162 274 59 52 chr13 14706877 14708768 -87164401 + L1ME LINE L1 3510 5412 -750 2186 144 11 19 chr13 14708768 14709136 -87164033 - MLT1A1 LTR MaLR 0 365 1 3162 274 59 52 chr13 14709136 14709162 -87164007 + L1ME LINE L1 5412 5436 -726 638 219 72 57 chr13 14709146 14709425 -87163744 + L1ME3A LINE L1 5876 6158 -12 * 1346 37 0 75 chr13 14709484 14709720 -87163449 - AluY SINE Alu 0 331 110 2182 126 3 0 chr13 14709957 14710259 -87162910 - AluSx SINE Alu -9 303 1 2280 98 0 7 chr13 14710808 14711113 -87162056 - AluSx SINE Alu -9 303 1 228 122 0 0 chr13 14713786 14713827 -87159342 + (TG)n Simple_repeat Simple_repeat 2 42 0 348 317 174 22 chr13 14714681 14714905 -87158264 + MIR SINE MIR 2 259 -3 208 147 0 0 chr13 14715504 14715538 -87157631 + (TA)n Simple_repeat Simple_repeat 2 35 0 403 243 314 16 chr13 14715726 14715911 -87157258 + MIR SINE MIR 8 247 -15 284 234 81 9 chr13 14716059 14716170 -87156999 + L1ME LINE L1 5541 5659 -462 488 216 43 0 chr13 14716248 14716364 -87156805 - LTR16A LTR ERVL -6 444 324 286 229 14 0 chr13 14716841 14716911 -87156258 + MLT1F LTR MaLR 279 349 -193 2451 141 57 0 chr13 14717075 14717480 -87155689 - MSTC LTR MaLR 0 428 1 818 219 13 0 chr13 14717665 14717820 -87155349 + FRAM SINE Alu 2 158 -8 455 358 81 44 chr13 14718009 14718770 -87154399 + L2 LINE L2 2469 3271 -1 2130 118 7 7 chr13 14719880 14720176 -87152993 + AluSx SINE Alu 1 296 -16 2145 110 10 0 chr13 14720658 14720949 -87152220 + AluSx SINE Alu 1 294 -18 237 297 40 0 chr13 14721212 14721286 -87151883 - MIR SINE MIR -1 261 185 438 258 242 6 chr13 14721309 14721491 -87151678 + MIR SINE MIR 4 228 -34 500 301 15 8 chr13 14721513 14721646 -87151523 - MIR SINE MIR -106 156 23 205 362 135 9 chr13 14721688 14721917 -87151252 + L2 LINE L2 2827 3084 -188 347 341 89 15 chr13 14721998 14722133 -87151036 - L2 LINE L2 -1 3271 3127 2266 122 3 0 chr13 14722133 14722437 -87150732 + AluSx SINE Alu 1 305 -7 245 307 191 37 chr13 14722922 14723859 -87149310 - L2 LINE L2 -559 2755 1607 235 277 116 27 chr13 14724252 14724364 -87148805 - L2 LINE L2 -42 3271 3150 217 354 50 10 chr13 14724671 14724770 -87148399 + L2 LINE L2 3170 3272 0 28 0 0 0 chr13 14724927 14724955 -87148214 + AT_rich Low_complexity Low_complexity 1 28 0 717 267 27 43 chr13 14725531 14725789 -87147380 - MIR SINE MIR -5 257 4 604 178 8 0 chr13 14726429 14726547 -87146622 + L1MB3 LINE L1 6058 6176 -7 1910 127 42 3 chr13 14728400 14728684 -87144485 + AluSx SINE Alu 1 295 -17 1295 77 120 29 chr13 14731547 14731755 -87141414 - MER30 DNA MER1_type 0 230 4 184 318 47 35 chr13 14731757 14731842 -87141327 + L2 LINE L2 3187 3272 0 958 164 5 0 chr13 14732439 14732634 -87140535 + L1MA4 LINE L1 6099 6294 -6 1884 173 14 0 chr13 14732786 14733081 -87140088 - AluJb SINE Alu -13 299 1 21 36 0 0 chr13 14733105 14733133 -87140036 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 14734503 14734524 -87138645 + AT_rich Low_complexity Low_complexity 1 21 0 294 297 45 63 chr13 14734634 14734856 -87138313 - MIR SINE MIR -1 261 44 305 324 81 7 chr13 14734881 14735017 -87138152 + MIR SINE MIR 61 206 -56 228 89 71 0 chr13 14735034 14735090 -87138079 + T-rich Low_complexity Low_complexity 1 60 0 278 170 0 0 chr13 14735281 14735328 -87137841 - L2 LINE L2 -1 3312 3266 2249 107 3 0 chr13 14735610 14735908 -87137261 + AluSg SINE Alu 1 299 -11 2459 61 0 3 chr13 14736304 14736600 -87136569 - AluY SINE Alu -16 295 1 2270 34 0 4 chr13 14736688 14736951 -87136218 + AluY SINE Alu 1 262 -49 1939 166 3 0 chr13 14738716 14739024 -87134145 - AluSx SINE Alu -3 309 1 1256 223 80 136 chr13 14739054 14739625 -87133544 - L2 LINE L2 -1 3312 2700 492 163 10 20 chr13 14739625 14739723 -87133446 - AluS SINE Alu -216 97 1 1256 223 80 136 chr13 14739723 14739913 -87133256 - L2 LINE L2 -613 2700 2501 353 190 293 9 chr13 14739912 14740028 -87133141 + MIR SINE MIR 94 242 -20 * 226 259 0 0 chr13 14740040 14740094 -87133075 + (TTA)n Simple_repeat Simple_repeat 3 56 0 395 227 47 86 chr13 14740094 14740174 -87132995 - L2 LINE L2 -816 2498 2423 2165 101 0 17 chr13 14740174 14740470 -87132699 - AluSx SINE Alu -21 291 1 395 227 47 86 chr13 14740470 14740517 -87132652 - L2 LINE L2 -891 2423 2376 1520 156 25 83 chr13 14740711 14740947 -87132222 + AluJo SINE Alu 1 214 -98 2090 120 3 30 chr13 14740947 14741248 -87131921 - AluSx SINE Alu -19 293 1 1520 156 25 83 chr13 14741248 14741337 -87131832 + AluJo SINE Alu 214 307 -5 196 273 102 11 chr13 14741853 14741941 -87131228 + L2 LINE L2 3192 3287 -26 283 287 143 42 chr13 14742515 14742780 -87130389 - L2 LINE L2 -1076 2238 1947 23 33 0 0 chr13 14743372 14743402 -87129767 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 14744450 14744472 -87128697 + AT_rich Low_complexity Low_complexity 1 22 0 311 289 59 9 chr13 14744529 14744675 -87128494 - MIR SINE MIR -78 130 1 2431 70 3 0 chr13 14744963 14745261 -87127908 - AluY SINE Alu -12 299 1 212 323 0 16 chr13 14747070 14747132 -87126037 - L2 LINE L2 -5 3308 3248 21 71 0 0 chr13 14747135 14747177 -87125992 + AT_rich Low_complexity Low_complexity 1 42 0 2624 114 5 0 chr13 14747269 14747654 -87125515 - L1PA12 LINE L1 0 6168 5782 4151 83 34 0 chr13 14747654 14748295 -87124874 - L1PA12 LINE L1 -287 5881 5221 1148 258 66 10 chr13 14749632 14750024 -87123145 - MLT1J2 LTR MaLR -1 449 36 344 296 204 0 chr13 14750963 14751115 -87122054 - MIR SINE MIR 0 262 80 813 161 0 0 chr13 14751216 14751346 -87121823 + FLAM_A SINE Alu 4 133 0 2039 149 0 3 chr13 14751349 14751650 -87121519 + AluJb SINE Alu 1 300 -12 1942 143 10 3 chr13 14752553 14752846 -87120323 + AluSx SINE Alu 1 295 -17 228 35 0 0 chr13 14753549 14753578 -87119591 + (CA)n Simple_repeat Simple_repeat 2 30 0 2167 96 4 0 chr13 14755642 14755957 -87117212 - AluSc SINE Alu 0 316 1 831 144 8 0 chr13 14757096 14757228 -87115941 - FLAM_C SINE Alu 0 133 1 324 278 179 37 chr13 14757356 14757518 -87115651 - MIR SINE MIR -58 204 20 1434 191 41 3 chr13 14758502 14758817 -87114352 + L1MB4 LINE L1 5777 6103 -77 313 101 0 72 chr13 14758926 14758995 -87114174 + L1MB2 LINE L1 6108 6171 0 24 53 0 0 chr13 14759617 14759655 -87113514 + AT_rich Low_complexity Low_complexity 1 38 0 226 0 0 0 chr13 14759735 14759760 -87113409 + (TTTTG)n Simple_repeat Simple_repeat 1 75 0 2045 131 0 0 chr13 14759760 14760042 -87113127 - AluSq SINE Alu -1 306 1 944 259 139 48 chr13 14760201 14760862 -87112307 - L1ME4a LINE L1 -2 6119 5399 764 146 15 15 chr13 14761019 14761149 -87112020 + FLAM_C SINE Alu 2 131 -2 2326 73 14 0 chr13 14762167 14762454 -87110715 - AluSg SINE Alu -19 291 1 24 32 0 0 chr13 14762497 14762528 -87110641 + AT_rich Low_complexity Low_complexity 1 31 0 1573 161 7 36 chr13 14762531 14762805 -87110364 + AluJo SINE Alu 1 266 -46 207 195 0 0 chr13 14762806 14762847 -87110322 + (TAGA)n Simple_repeat Simple_repeat 3 43 0 380 319 30 0 chr13 14763581 14763716 -87109453 - L2 LINE L2 -238 3034 2896 275 337 99 29 chr13 14763742 14763985 -87109184 - L2 LINE L2 -512 2802 2543 25 0 0 0 chr13 14764476 14764501 -87108668 + AT_rich Low_complexity Low_complexity 1 25 0 275 255 94 101 chr13 14765322 14765471 -87107698 + L2 LINE L2 3125 3272 0 1894 87 0 0 chr13 14765494 14765748 -87107421 + L1PA7 LINE L1 5901 6154 0 516 297 165 39 chr13 14766897 14767261 -87105908 - L3 LINE CR1 -5 1572 1163 360 262 0 19 chr13 14767627 14767734 -87105435 - MLT1K LTR MaLR -162 426 322 180 154 19 96 chr13 14767976 14768028 -87105141 + L2 LINE L2 3216 3263 -9 257 306 104 0 chr13 14768409 14768543 -87104626 + L3 LINE CR1 1109 1256 -321 623 184 184 11 chr13 14768755 14769016 -87104153 - MER33 DNA MER1_type 0 324 19 23 54 0 0 chr13 14769398 14769435 -87103734 + AT_rich Low_complexity Low_complexity 1 37 0 258 32 0 0 chr13 14771133 14771164 -87102005 + (CA)n Simple_repeat Simple_repeat 2 32 0 1881 151 13 13 chr13 14773454 14773752 -87099417 + AluJb SINE Alu 1 298 -14 688 291 36 28 chr13 14773872 14774020 -87099149 + MIR SINE MIR 7 159 -103 2435 111 3 3 chr13 14774020 14774380 -87098789 + MER46B DNA MER2_type 1 235 -1 688 291 36 28 chr13 14774380 14774478 -87098691 + MIR SINE MIR 159 255 -7 2116 127 3 0 chr13 14775535 14775827 -87097342 + AluSx SINE Alu 3 295 -17 585 105 12 18 chr13 14777798 14778046 -87095123 + AluSx SINE Alu 1 302 -10 1940 166 23 3 chr13 14778157 14778507 -87094662 - MLT1A1 LTR MaLR -8 357 1 2161 131 3 3 chr13 14778543 14778848 -87094321 + AluSg SINE Alu 1 305 -5 348 59 0 0 chr13 14779171 14779222 -87093947 + Alu SINE Alu 252 302 0 431 293 58 29 chr13 14780358 14780532 -87092637 - MIR SINE MIR -56 206 28 237 361 13 48 chr13 14780604 14780769 -87092400 + MIR SINE MIR 38 195 -67 1300 227 8 11 chr13 14780879 14781143 -87092026 - AluJb SINE Alu -49 263 1 2271 76 0 10 chr13 14781154 14781455 -87091714 - AluY SINE Alu -13 298 1 2842 151 103 18 chr13 14781455 14782049 -87091120 - L1MB2 LINE L1 -47 6124 5473 189 0 0 0 chr13 14782049 14782070 -87091099 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2842 151 103 18 chr13 14782070 14782097 -87091072 - L1MB2 LINE L1 -698 5473 5450 180 0 0 0 chr13 14782194 14782214 -87090955 + (TG)n Simple_repeat Simple_repeat 2 21 0 1984 136 0 3 chr13 14782214 14782500 -87090669 - AluSx SINE Alu -27 285 1 605 154 4 0 chr13 14782739 14782859 -87090310 - LTR12 LTR ERV1 0 714 49 309 224 0 0 chr13 14782859 14782935 -87090234 - LTR30 LTR ERV1 -98 624 549 835 55 0 0 chr13 14782937 14783046 -87090123 - LTR12 LTR ERV1 -440 274 166 * 1175 111 16 136 chr13 14783021 14783342 -87089827 - LTR12 LTR ERV1 -475 239 1 1278 277 61 79 chr13 14783388 14783642 -87089527 - L1MEd LINE L1 -5011 1108 851 2298 104 0 10 chr13 14783642 14783951 -87089218 - AluSx SINE Alu -6 306 1 1278 277 61 79 chr13 14783951 14784823 -87088346 - L1MEd LINE L1 -5268 851 2 386 152 0 159 chr13 14785932 14786077 -87087092 + L1MA8 LINE L1 6166 6287 -4 496 306 47 50 chr13 14786147 14786448 -87086721 + L1MEd LINE L1 2 301 -5818 2389 88 0 7 chr13 14786479 14786785 -87086384 + AluY SINE Alu 1 304 -7 234 0 0 0 chr13 14786785 14786811 -87086358 + (TA)n Simple_repeat Simple_repeat 1 26 0 215 31 31 0 chr13 14786810 14786842 -87086327 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 * 3764 118 3 20 chr13 14786866 14787467 -87085702 - HSMAR2 DNA Mariner -1 1301 711 2242 123 0 0 chr13 14787468 14787777 -87085392 - AluSx SINE Alu -3 309 1 1168 178 50 4 chr13 14788267 14788508 -87084661 - MLT1D LTR MaLR 0 505 254 247 297 14 0 chr13 14790047 14790121 -87083048 + MER117 DNA MER1_type 119 193 -4 370 286 137 44 chr13 14790173 14790400 -87082769 + MIR SINE MIR 3 250 -12 2475 60 0 3 chr13 14842948 14843249 -87029920 + AluY SINE Alu 1 300 -11 1672 91 17 4 chr13 14843264 14843495 -87029674 + L1PB1 LINE L1 5896 6129 -22 2050 131 0 0 chr13 14844304 14844609 -87028560 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 14844807 14844839 -87028330 + AT_rich Low_complexity Low_complexity 1 32 0 270 200 0 0 chr13 14845041 14845086 -87028083 + FRAM/FAM SINE Alu 1 37 -129 950 144 0 0 chr13 14845088 14845220 -87027949 + AluJo/FRAM SINE Alu 156 287 -25 751 226 112 108 chr13 14845268 14846181 -87026988 + L1MC5 LINE L1 7036 7951 -10 479 209 9 204 chr13 14846229 14846449 -87026720 + MER5B DNA MER1_type 1 177 -1 405 323 29 31 chr13 14846733 14846944 -87026225 - MIR SINE MIR -50 212 3 2276 86 21 0 chr13 14847326 14847616 -87025553 - AluSg SINE Alu -14 296 1 637 115 16 24 chr13 14847744 14847934 -87025235 + AluSx SINE Alu 59 302 -10 784 125 0 0 chr13 14847943 14848047 -87025122 + AluSg SINE Alu 2 105 -205 2237 82 3 7 chr13 14850820 14851111 -87022058 + AluSg1 SINE Alu 1 290 -19 30 0 0 0 chr13 14851481 14851511 -87021658 + AT_rich Low_complexity Low_complexity 1 30 0 396 336 15 0 chr13 14852132 14852269 -87020900 + MIR3 SINE MIR 54 192 -16 1926 138 0 0 chr13 14853796 14854071 -87019098 + AluSx SINE Alu 2 276 -36 206 185 0 37 chr13 14854782 14854836 -87018333 + T-rich Low_complexity Low_complexity 5 56 0 356 319 154 12 chr13 14855050 14855219 -87017950 - MER91A DNA MER1_type 0 196 4 180 0 0 0 chr13 14855580 14855600 -87017569 + (A)n Simple_repeat Simple_repeat 1 20 0 237 33 0 0 chr13 14855600 14855630 -87017539 + (TA)n Simple_repeat Simple_repeat 2 31 0 1045 117 48 0 chr13 14855783 14855928 -87017241 - AluSg/x SINE Alu -30 282 131 2230 93 3 17 chr13 14856499 14856800 -87016369 + AluSx SINE Alu 1 297 -15 2322 104 3 0 chr13 14857299 14857596 -87015573 - AluSq SINE Alu -15 298 1 363 284 158 77 chr13 14857702 14858012 -87015157 + L2 LINE L2 2937 3271 -1 376 261 17 25 chr13 14858314 14858433 -87014736 + MIR SINE MIR 44 161 -101 33 0 0 0 chr13 14859087 14859120 -87014049 + AT_rich Low_complexity Low_complexity 1 33 0 1009 206 0 0 chr13 14859602 14859767 -87013402 + FRAM SINE Alu 2 166 0 1877 101 0 45 chr13 14859811 14860097 -87013072 - AluSg SINE Alu 0 310 38 302 285 98 57 chr13 14860230 14860310 -87012859 + MIR SINE MIR 20 108 -154 2620 26 7 3 chr13 14860310 14860612 -87012557 - AluY SINE Alu -8 303 1 302 285 98 57 chr13 14860612 14860654 -87012515 + MIR SINE MIR 108 147 -115 578 135 79 0 chr13 14860974 14861063 -87012106 + MER46A DNA MER2_type 1 96 -140 * 634 116 12 1 chr13 14861053 14861159 -87012010 + Tigger4(Zombi) DNA MER2_type 130 2731 0 1028 130 76 5 chr13 14861327 14861512 -87011657 + L1MA8 LINE L1 6091 6288 -3 2632 43 10 0 chr13 14861516 14861819 -87011350 + AluY SINE Alu 1 306 -5 2443 58 0 32 chr13 14862185 14862494 -87010675 + AluY SINE Alu 1 299 -12 255 243 29 78 chr13 14864108 14864211 -87008958 - MIR3 SINE MIR -3 205 108 481 329 31 6 chr13 14864289 14864450 -87008719 + MIR SINE MIR 20 184 -78 280 247 38 35 chr13 14864473 14864663 -87008506 - MIR SINE MIR -6 256 14 410 295 147 69 chr13 14866111 14866731 -87006438 - L2 LINE L2 -2 3270 2584 181 305 253 0 chr13 14867203 14867298 -87005871 - MIR SINE MIR -118 144 26 319 291 82 18 chr13 14868301 14868411 -87004758 - MIR SINE MIR -44 218 102 495 260 151 80 chr13 14869847 14869949 -87003220 + Charlie8 DNA MER1_type 13 106 -497 2194 118 0 16 chr13 14869949 14870264 -87002905 + AluSg SINE Alu 1 310 0 495 260 151 80 chr13 14870264 14870635 -87002534 + Charlie8 DNA MER1_type 106 502 -101 379 327 101 18 chr13 14871260 14871477 -87001692 - L3 LINE CR1 -715 862 628 2268 71 7 10 chr13 14873554 14873848 -86999321 + AluY SINE Alu 1 293 -18 2320 85 0 23 chr13 14873943 14874249 -86998920 + AluSg SINE Alu 3 301 -9 21 36 0 0 chr13 14876339 14876367 -86996802 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr13 14877256 14877292 -86995877 + AT_rich Low_complexity Low_complexity 1 36 0 219 356 134 19 chr13 14877448 14877664 -86995505 - L2 LINE L2 -224 3048 2808 187 401 92 4 chr13 14877685 14877912 -86995257 - L2 LINE L2 -607 2707 2461 2092 123 36 3 chr13 14878458 14878759 -86994410 - AluSp SINE Alu -2 311 1 4918 115 65 56 chr13 14878759 14879059 -86994110 + Tigger1 DNA MER2_type 1552 1848 -570 2055 125 0 3 chr13 14879059 14879347 -86993822 - AluSx SINE Alu -25 287 1 4918 115 65 56 chr13 14879347 14879576 -86993593 + Tigger1 DNA MER2_type 1848 2073 -345 2042 118 4 4 chr13 14879576 14879897 -86993272 + AluSc SINE Alu 1 321 0 4918 115 65 56 chr13 14879897 14880224 -86992945 + Tigger1 DNA MER2_type 2073 2418 0 688 285 66 9 chr13 14880917 14881152 -86992017 - MIR SINE MIR -11 251 5 641 164 16 23 chr13 14882053 14882181 -86990988 + L1MB8 LINE L1 6051 6177 -1 216 158 0 0 chr13 14882952 14882990 -86990179 + T-rich Low_complexity Low_complexity 3 40 0 204 309 86 12 chr13 14883790 14883871 -86989298 - MER91C DNA MER1_type -38 102 16 1683 254 134 66 chr13 14885508 14886076 -86987093 - L2 LINE L2 0 3313 2785 636 109 89 0 chr13 14886076 14886177 -86986992 + L1MB4 LINE L1 6070 6179 -1 1683 254 134 66 chr13 14886177 14886607 -86986562 - L2 LINE L2 -528 2785 2234 401 342 70 0 chr13 14886698 14886856 -86986313 + MER5B DNA MER1_type 5 173 -5 322 267 22 11 chr13 14887500 14887590 -86985579 + MER5B DNA MER1_type 1 91 -87 934 247 123 148 chr13 14887641 14889297 -86983872 + L2 LINE L2 582 2191 -1123 533 112 0 0 chr13 14889297 14889386 -86983783 - L1PB1 LINE L1 0 6151 6063 934 247 123 148 chr13 14889386 14889553 -86983616 + L2 LINE L2 2191 2361 -953 619 268 83 31 chr13 14889582 14889810 -86983359 - MIR SINE MIR 0 262 23 256 264 78 47 chr13 14889894 14890023 -86983146 + L2 LINE L2 2513 2645 -669 218 242 345 6 chr13 14890183 14890348 -86982821 + L2 LINE L2 2926 3146 -167 289 250 53 0 chr13 14890429 14890505 -86982664 + MIR SINE MIR 108 187 -75 444 176 9 120 chr13 14891553 14891661 -86981508 + MER20 DNA MER1_type 6 101 -118 2205 113 0 7 chr13 14891877 14892178 -86980991 - AluSx SINE Alu -13 299 1 2514 63 0 0 chr13 14892293 14892593 -86980576 - AluY SINE Alu -11 300 1 403 301 0 0 chr13 14892608 14892711 -86980458 - MIR SINE MIR -2 260 158 575 287 118 35 chr13 14892898 14893716 -86979453 + L1MCc LINE L1 1267 2399 -4723 2346 107 3 0 chr13 14893716 14894025 -86979144 + AluSx SINE Alu 1 310 -2 575 287 118 35 chr13 14894025 14894111 -86979058 + L1MCc LINE L1 2399 2476 -4646 2197 125 10 0 chr13 14894293 14894597 -86978572 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr13 14894865 14894886 -86978283 + AT_rich Low_complexity Low_complexity 1 21 0 2221 105 0 0 chr13 14894886 14895171 -86977998 - AluSg SINE Alu -25 285 1 282 298 167 6 chr13 14895295 14895465 -86977704 + MIR SINE MIR 43 236 -26 2182 117 0 3 chr13 14896064 14896363 -86976806 - AluSq SINE Alu -15 298 1 226 304 130 35 chr13 14897043 14897273 -86975896 - MER102b DNA MER1_type 0 341 90 187 369 18 27 chr13 14897976 14898087 -86975082 + L2 LINE L2 2636 2745 -569 3923 156 35 16 chr13 14899392 14899665 -86973504 + L1MA9 LINE L1 5556 5822 -490 2097 105 0 14 chr13 14899665 14899975 -86973194 + AluSx SINE Alu 1 306 0 3923 156 35 16 chr13 14899975 14900410 -86972759 + L1MA9 LINE L1 5822 6279 -33 2250 105 0 19 chr13 14900421 14900736 -86972433 - AluSx SINE Alu -3 309 1 302 319 221 5 chr13 14901049 14901253 -86971916 + MIR SINE MIR 15 262 0 2102 100 3 7 chr13 14901632 14901932 -86971237 + AluSp SINE Alu 1 299 -14 543 244 103 0 chr13 14903201 14903357 -86969812 - MER3 DNA MER1_type -21 188 17 1382 159 189 27 chr13 14903859 14903979 -86969190 - Charlie1a DNA MER1_type -1306 1455 1356 2225 111 0 3 chr13 14903979 14904285 -86968884 + AluSx SINE Alu 1 305 -7 1382 159 189 27 chr13 14904285 14904567 -86968602 - Charlie1a DNA MER1_type -1405 1356 988 2802 209 108 20 chr13 14904602 14905337 -86967832 - Charlie1a DNA MER1_type -590 865 67 2102 117 10 3 chr13 14905503 14905801 -86967368 - AluSg SINE Alu -10 300 1 25 51 0 0 chr13 14905856 14905895 -86967274 + AT_rich Low_complexity Low_complexity 1 39 0 411 332 91 5 chr13 14906399 14906586 -86966583 + MIR SINE MIR 2 204 -58 262 283 178 49 chr13 14906885 14907189 -86965980 - L2 LINE L2 -95 3218 2876 202 330 58 58 chr13 14907411 14907672 -86965497 + L2 LINE L2 2809 3069 -203 * 211 139 139 0 chr13 14907656 14907699 -86965470 - L2 LINE L2 -97 3216 3168 280 361 41 8 chr13 14907906 14908055 -86965114 + MER5B DNA MER1_type 7 153 -25 230 382 39 10 chr13 14908051 14908153 -86965016 - L2 LINE L2 -648 2666 2562 * 281 282 64 0 chr13 14908281 14908359 -86964810 - L2 LINE L2 -2 3270 3188 22 0 0 0 chr13 14908809 14908831 -86964338 + AT_rich Low_complexity Low_complexity 1 22 0 1938 147 26 3 chr13 14909033 14909346 -86963823 - L1MC2 LINE L1 -158 6186 5867 2853 104 106 2 chr13 14909346 14909779 -86963390 - MER9 LTR ERVK 0 511 34 2723 118 53 9 chr13 14909785 14910205 -86962964 - L1MC2 LINE L1 -471 5873 5432 2502 64 0 13 chr13 14910205 14910518 -86962651 - AluY SINE Alu -2 309 1 2723 118 53 9 chr13 14910518 14910529 -86962640 - L1MC2 LINE L1 -912 5432 5423 574 319 169 22 chr13 14911103 14911416 -86961753 - L2 LINE L2 0 3272 2914 239 119 0 0 chr13 14911501 14911543 -86961626 + L1MA3 LINE L1 6264 6305 0 1316 195 110 11 chr13 14911700 14911972 -86961197 - AluJo SINE Alu -1 301 3 22 0 0 0 chr13 14912262 14912284 -86960885 + AT_rich Low_complexity Low_complexity 1 22 0 2528 56 13 0 chr13 14912603 14912905 -86960264 - AluY SINE Alu -5 306 1 1746 150 4 0 chr13 14914231 14914497 -86958672 + AluSq SINE Alu 1 267 -46 * 1927 93 4 12 chr13 14914495 14914753 -86958416 + AluY SINE Alu 41 296 -15 1208 153 4 75 chr13 14914834 14915088 -86958081 - AluJb SINE Alu -13 299 64 1792 135 4 0 chr13 14915298 14915564 -86957605 - AluSq SINE Alu -2 311 45 638 170 189 13 chr13 14915714 14915867 -86957302 + MER53 DNA DNA 10 189 0 180 0 0 0 chr13 14915942 14915962 -86957207 + (TG)n Simple_repeat Simple_repeat 2 21 0 1384 84 20 141 chr13 14916770 14917067 -86956102 - Tigger7 DNA MER2_type -2 2489 2229 * 4705 128 42 75 chr13 14917066 14917933 -86955236 - Tigger7 DNA MER2_type -1648 839 2 1165 141 130 0 chr13 14918153 14918345 -86954824 - AluSg/x SINE Alu -18 294 78 894 181 0 0 chr13 14918502 14918651 -86954518 + AluJb SINE Alu 152 300 -12 208 207 11 58 chr13 14918868 14918955 -86954214 + (TATG)n Simple_repeat Simple_repeat 3 85 0 4691 72 3 6 chr13 14920684 14921308 -86951861 - L1PA10 LINE L1 -11 6157 5536 1657 194 7 0 chr13 14921473 14921767 -86951402 + AluJo SINE Alu 12 307 -5 2260 113 0 3 chr13 14922130 14922432 -86950737 + AluSx SINE Alu 1 301 -11 1634 186 14 3 chr13 14922949 14923245 -86949924 - AluJo SINE Alu -9 303 5 2346 4 0 8 chr13 14928693 14928951 -86944218 + AluYa5 SINE Alu 41 296 -15 271 234 240 82 chr13 14928957 14929059 -86944110 + MIR SINE MIR 59 144 -118 2204 100 10 3 chr13 14929059 14929358 -86943811 + AluSx SINE Alu 1 301 -11 271 234 240 82 chr13 14929358 14929426 -86943743 + MIR SINE MIR 144 256 -6 1904 115 44 90 chr13 14929559 14929833 -86943336 - MER7A DNA MER2_type -2692 346 94 2293 97 0 10 chr13 14929833 14930132 -86943037 + AluSx SINE Alu 1 296 -16 1904 115 44 90 chr13 14930132 14930222 -86942947 - MER7A DNA MER2_type -2944 94 1 434 123 92 0 chr13 14931778 14931843 -86941326 - AluS SINE Alu -237 76 6 633 140 9 0 chr13 14931849 14931963 -86941206 - Charlie1a DNA MER1_type -26 1429 1315 2083 184 58 9 chr13 14931965 14932400 -86940769 - Charlie1a DNA MER1_type -617 838 383 371 287 59 22 chr13 14932403 14932539 -86940630 - Charlie1a DNA MER1_type -1314 141 1 1930 115 77 18 chr13 14932652 14932990 -86940179 - MER46B DNA MER2_type -1 235 3 851 233 197 48 chr13 14933011 14933513 -86939656 - L1MC4a LINE L1 -1487 6321 5745 21 0 0 0 chr13 14934080 14934101 -86939068 + AT_rich Low_complexity Low_complexity 1 21 0 254 324 29 36 chr13 14934105 14934244 -86938925 - MIR SINE MIR -39 223 86 3415 258 164 38 chr13 14934252 14935988 -86937181 + HAL1 LINE L1 12 1966 -541 2097 130 20 0 chr13 14936010 14936309 -86936860 + AluSx SINE Alu 1 305 -7 1070 256 146 35 chr13 14936309 14936623 -86936546 + HAL1 LINE L1 15 293 -2214 1882 129 71 0 chr13 14936623 14936903 -86936266 + AluSx SINE Alu 2 301 -11 1070 256 146 35 chr13 14936903 14937138 -86936031 + HAL1 LINE L1 293 625 -1882 582 262 63 23 chr13 14937164 14937385 -86935784 + HAL1 LINE L1 743 972 -1535 402 252 139 72 chr13 14937387 14937538 -86935631 + HAL1 LINE L1 1945 2084 -423 2439 73 0 13 chr13 14937538 14937853 -86935316 + AluY SINE Alu 1 311 0 402 252 139 72 chr13 14937853 14937929 -86935240 + HAL1 LINE L1 2084 2153 -354 4807 102 21 0 chr13 14937929 14938603 -86934566 + LTR12 LTR ERV1 1 688 0 402 252 139 72 chr13 14938603 14938790 -86934379 + HAL1 LINE L1 2153 2388 -119 2110 110 0 0 chr13 14938866 14939171 -86933998 - AluY SINE Alu 0 305 1 488 279 145 11 chr13 14940117 14940386 -86932783 + L2 LINE L2 1552 1856 -1458 841 279 39 23 chr13 14940393 14940651 -86932518 + L2 LINE L2 2630 2891 -423 350 230 222 16 chr13 14940665 14940791 -86932378 + L2 LINE L2 3161 3312 -1 198 323 211 26 chr13 14940877 14941679 -86931490 - L2 LINE L2 -923 2391 1442 2259 82 20 7 chr13 14942651 14942780 -86930389 + AluSq SINE Alu 1 127 -186 225 0 0 0 chr13 14942780 14942805 -86930364 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2259 82 20 7 chr13 14942805 14942969 -86930200 + AluSq SINE Alu 127 298 -15 2154 81 0 84 chr13 14943119 14943441 -86929728 - AluSp SINE Alu -18 295 1 967 246 20 36 chr13 14944112 14944360 -86928809 - MIR SINE MIR -2 260 17 2339 99 0 0 chr13 14945265 14945569 -86927600 + AluSq SINE Alu 1 304 -9 986 114 0 7 chr13 14945581 14945721 -86927448 + AluJb SINE Alu 1 139 -173 2102 125 0 3 chr13 14945722 14946011 -86927158 + AluSx SINE Alu 1 288 -24 2305 111 7 0 chr13 14946011 14946318 -86926851 + AluSx SINE Alu 1 309 -3 3545 263 159 20 chr13 14946903 14947441 -86925728 - L2 LINE L2 -8 3305 2843 2176 104 7 3 chr13 14947441 14947730 -86925439 - AluSx SINE Alu -22 290 1 3545 263 159 20 chr13 14947730 14948937 -86924232 - L2 LINE L2 -470 2843 1314 24 32 0 0 chr13 14948998 14949029 -86924140 + AT_rich Low_complexity Low_complexity 1 31 0 1872 155 7 23 chr13 14949092 14949402 -86923767 - AluJo SINE Alu -6 306 2 1422 266 193 29 chr13 14951311 14952151 -86921018 - HAL1 LINE L1 -1 2506 1529 310 161 0 0 chr13 14952189 14952245 -86920924 - Alu SINE Alu 0 302 247 747 187 0 0 chr13 14952250 14952373 -86920796 - FLAM_C SINE Alu -20 123 1 2281 108 10 0 chr13 14952442 14952749 -86920420 - AluSq SINE Alu -3 310 1 677 216 30 96 chr13 14952765 14953099 -86920070 - HAL1 LINE L1 -1096 1411 1100 1258 257 90 55 chr13 14953460 14953611 -86919558 + L1MC5 LINE L1 6456 6600 -1361 2169 131 0 0 chr13 14953611 14953908 -86919261 + AluSx SINE Alu 1 297 -15 1258 257 90 55 chr13 14953908 14954227 -86918942 + L1MC5 LINE L1 6600 6906 -1055 2109 116 0 7 chr13 14954227 14954520 -86918649 + AluSx SINE Alu 6 296 -16 1258 257 90 55 chr13 14954520 14954593 -86918576 + L1MC5 LINE L1 6906 6975 -986 1577 181 31 20 chr13 14954593 14954886 -86918283 + AluJb SINE Alu 3 298 -14 1258 257 90 55 chr13 14954886 14955045 -86918124 + L1MC5 LINE L1 6975 7187 -774 2305 87 0 7 chr13 14955068 14955366 -86917803 - AluSg SINE Alu -1 309 14 528 259 193 102 chr13 14955392 14955854 -86917315 - HAL1 LINE L1 -1383 1124 705 2349 77 3 10 chr13 14955854 14956166 -86917003 - AluSg SINE Alu 0 310 1 528 259 193 102 chr13 14956166 14956486 -86916683 - HAL1 LINE L1 -1802 705 271 524 238 72 66 chr13 14956531 14956631 -86916538 + MIR SINE MIR 78 181 -81 2124 106 0 0 chr13 14956631 14956932 -86916237 - AluSx SINE Alu -11 301 1 524 238 72 66 chr13 14956932 14957012 -86916157 + MIR SINE MIR 181 259 -3 301 243 37 65 chr13 14957029 14957136 -86916033 - HAL1 LINE L1 -2302 205 102 1893 124 57 0 chr13 14957669 14957951 -86915218 - AluSq SINE Alu -15 298 1 6710 119 29 22 chr13 14958775 14959380 -86913789 - Tigger1 DNA MER2_type 0 2418 1818 2043 131 56 14 chr13 14959380 14959740 -86913429 - THE1C LTR MaLR 0 375 1 8360 137 27 75 chr13 14959740 14960055 -86913114 - THE1C-int LTR MaLR 0 1580 1251 1661 117 4 4 chr13 14960055 14960286 -86912883 - AluSg SINE Alu -16 294 64 2173 139 0 0 chr13 14960286 14960594 -86912575 + AluSg SINE Alu 2 310 0 8360 137 27 75 chr13 14960594 14961934 -86911235 - THE1C-int LTR MaLR -327 1253 4 1960 140 59 14 chr13 14961937 14962294 -86910875 - THE1C LTR MaLR 0 375 3 6710 119 29 22 chr13 14962294 14962618 -86910551 - Tigger1 DNA MER2_type -601 1817 1474 2426 74 3 0 chr13 14962618 14962917 -86910252 - AluSp SINE Alu -12 301 2 6710 119 29 22 chr13 14962917 14963052 -86910117 - Tigger1 DNA MER2_type -944 1474 1341 769 169 32 45 chr13 14963046 14963200 -86909969 - Tigger1 DNA MER2_type -2265 153 2 * 2045 139 7 3 chr13 14963299 14963601 -86909568 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr13 14964061 14964084 -86909085 + AT_rich Low_complexity Low_complexity 1 23 0 2260 98 7 0 chr13 14964368 14964665 -86908504 + AluSq SINE Alu 1 299 -14 204 304 191 24 chr13 14965241 14965409 -86907760 + MIR3 SINE MIR 10 205 -3 183 129 0 0 chr13 14965729 14965760 -86907409 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 600 265 33 38 chr13 14965896 14966107 -86907062 + MIR SINE MIR 34 243 -19 2338 105 0 0 chr13 14967592 14967897 -86905272 - AluY SINE Alu -6 305 1 5709 246 127 71 chr13 14968221 14969177 -86903992 - L2 LINE L2 -1 3312 2411 1174 53 0 0 chr13 14969177 14969309 -86903860 - AluY SINE Alu -179 132 1 5709 246 127 71 chr13 14969309 14970137 -86903032 - L2 LINE L2 -902 2411 1630 2221 78 38 0 chr13 14970137 14970430 -86902739 + AluY SINE Alu 1 304 -7 5709 246 127 71 chr13 14970430 14971510 -86901659 - L2 LINE L2 -1683 1630 154 247 91 0 0 chr13 14971529 14971573 -86901596 - L1MA2 LINE L1 0 6304 6261 1824 126 0 0 chr13 14973227 14973481 -86899688 + AluSx SINE Alu 44 297 -15 1788 169 36 3 chr13 14973889 14974209 -86898960 - MLT1C LTR MaLR 0 654 126 4087 175 49 54 chr13 14974209 14975168 -86898001 + LTR13 LTR ERVK 1 954 0 1788 169 36 3 chr13 14975168 14975182 -86897987 - MLT1C LTR MaLR -528 126 114 1863 158 3 3 chr13 14975182 14975479 -86897690 - AluSx SINE Alu -14 298 2 1428 118 102 12 chr13 14975483 14975728 -86897441 + MER47A DNA MER2_type 30 296 -70 2454 238 51 41 chr13 14975794 14976727 -86896442 - L1MDa LINE L1 -3830 2710 1769 320 163 0 0 chr13 14976735 14976784 -86896385 + MER47A DNA MER2_type 307 355 -11 242 234 0 0 chr13 14976788 14976835 -86896334 - MLT1C LTR MaLR -374 93 47 182 322 35 23 chr13 14977211 14977298 -86895871 + L2 LINE L2 2699 2786 -528 672 151 72 50 chr13 14977373 14977512 -86895657 + FLAM_C SINE Alu 2 143 0 490 286 118 0 chr13 14977927 14978105 -86895064 - MIR SINE MIR -61 201 3 753 261 207 14 chr13 14978282 14978635 -86894534 - LTR16A LTR ERVL -14 436 16 580 124 10 15 chr13 14979467 14979669 -86893500 + AluSx SINE Alu 2 299 -3 3845 224 82 39 chr13 14979676 14980821 -86892348 - L1MC4a LINE L1 0 7808 6615 2217 224 58 61 chr13 14980818 14981573 -86891596 - L1MC4a LINE L1 -1594 6214 5462 * 628 248 164 9 chr13 14982484 14982710 -86890459 - MIR SINE MIR 0 262 2 26 0 0 0 chr13 14982816 14982842 -86890327 + AT_rich Low_complexity Low_complexity 1 26 0 2190 125 0 6 chr13 14983024 14983335 -86889834 - AluSx SINE Alu 0 312 4 389 218 13 0 chr13 14983436 14983514 -86889655 + MER116 DNA Mariner 1 79 -1 707 163 70 52 chr13 14984505 14984562 -86888607 - MIR SINE MIR -48 214 159 1186 176 10 19 chr13 14984562 14984767 -86888402 - MER6B DNA MER2_type -3 207 5 707 163 70 52 chr13 14984767 14984881 -86888288 - MIR SINE MIR -103 159 40 937 134 0 8 chr13 14986083 14986217 -86886952 + FLAM_C SINE Alu 1 133 0 2192 120 0 3 chr13 14986851 14987150 -86886019 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 14987658 14987679 -86885490 + AT_rich Low_complexity Low_complexity 1 21 0 495 272 203 20 chr13 14989265 14989511 -86883658 - MARNA DNA Mariner -263 323 33 239 318 162 13 chr13 14990663 14990817 -86882352 - MER5A DNA MER1_type -7 182 6 2065 135 0 0 chr13 14992292 14992595 -86880574 + AluSx SINE Alu 1 303 -9 2553 48 3 26 chr13 14992953 14993266 -86879903 - AluY SINE Alu -5 306 1 2311 93 3 10 chr13 14993514 14993827 -86879342 - AluSq SINE Alu -2 311 1 294 322 128 13 chr13 14996375 14996524 -86876645 + L3 LINE CR1 353 518 -1059 226 364 127 9 chr13 14996558 14996668 -86876501 - L2 LINE L2 -11 3302 3180 558 313 28 36 chr13 14996928 14997177 -86875992 + L3 LINE CR1 1055 1301 -276 419 265 175 23 chr13 14997177 14997539 -86875630 - MLT1H LTR MaLR -90 459 1 302 267 114 9 chr13 14998929 14999034 -86874135 - L1MC5 LINE L1 -36 7925 7810 293 286 0 0 chr13 14999126 14999217 -86873952 - L1MC5 LINE L1 -396 7565 7475 534 281 67 30 chr13 14999241 14999399 -86873770 - L1MC4 LINE L1 0 8042 7868 2134 106 3 47 chr13 14999399 14999720 -86873449 + AluSx SINE Alu 1 307 -5 534 281 67 30 chr13 14999720 14999828 -86873341 - L1MC4 LINE L1 -174 7868 7766 23 0 0 0 chr13 14999946 14999969 -86873200 + AT_rich Low_complexity Low_complexity 1 23 0 2163 106 0 7 chr13 14999988 15000280 -86872889 - AluSx SINE Alu -22 290 1 26 0 0 0 chr13 15000290 15000316 -86872853 + AT_rich Low_complexity Low_complexity 1 26 0 737 278 66 28 chr13 15000425 15000745 -86872424 - L1MC4 LINE L1 -495 7547 7216 312 227 86 121 chr13 15000789 15000931 -86872238 - L1ME4a LINE L1 -89 6032 5887 2456 86 0 0 chr13 15000931 15001234 -86871935 - AluSx SINE Alu -9 303 1 312 227 86 121 chr13 15001234 15001430 -86871739 - L1ME4a LINE L1 -234 5887 5706 349 366 22 22 chr13 15001709 15001892 -86871277 - MIR SINE MIR -33 229 47 287 320 33 16 chr13 15001903 15002025 -86871144 - HAL1b LINE L1 -750 598 475 385 276 73 73 chr13 15002046 15002321 -86870848 - MLT1J LTR MaLR -1 510 236 22 0 0 0 chr13 15002439 15002461 -86870708 + AT_rich Low_complexity Low_complexity 1 22 0 578 281 29 29 chr13 15002921 15003131 -86870038 + L2 LINE L2 3104 3313 0 527 254 216 38 chr13 15003233 15003446 -86869723 - MIR SINE MIR -4 258 8 239 226 135 23 chr13 15003458 15003591 -86869578 - L1ME LINE L1 -375 5787 5640 592 252 7 7 chr13 15003678 15003813 -86869356 + L2 LINE L2 3179 3313 0 2227 90 0 0 chr13 15003888 15004167 -86869002 - AluSg SINE Alu -31 279 1 2841 67 22 3 chr13 15004268 15004624 -86868545 + THE1C LTR MaLR 3 365 -10 11437 98 41 7 chr13 15004624 15006150 -86867019 + THE1C-int LTR MaLR 1 1578 -2 2555 71 22 41 chr13 15006150 15006290 -86866879 + THE1C LTR MaLR 19 160 -215 2099 118 13 35 chr13 15006290 15006603 -86866566 - AluSx SINE Alu -6 306 1 2555 71 22 41 chr13 15006603 15006826 -86866343 + THE1C LTR MaLR 160 375 0 2417 87 0 6 chr13 15007716 15008027 -86865142 - AluSq SINE Alu -4 309 1 364 233 107 79 chr13 15008152 15008367 -86864802 - L2 LINE L2 -4 3309 3089 261 310 181 0 chr13 15008591 15008707 -86864462 + MIR SINE MIR 126 262 0 1665 170 24 40 chr13 15010595 15010971 -86862198 + L1MB4 LINE L1 5777 6146 -34 431 57 0 0 chr13 15011604 15011657 -86861512 - Alu SINE Alu -260 58 6 227 237 34 0 chr13 15011661 15011720 -86861449 - L1ME LINE L1 -454 5667 5607 392 190 110 0 chr13 15012069 15012169 -86861000 - L1ME4a LINE L1 -6 6115 6005 505 263 108 17 chr13 15012599 15012773 -86860396 - MIR SINE MIR -62 146 8 406 319 18 35 chr13 15012810 15012979 -86860190 - MIR3 SINE MIR -23 185 20 312 301 11 0 chr13 15013068 15013161 -86860008 - MIR3 SINE MIR -1 207 114 226 273 260 0 chr13 15013769 15013846 -86859323 - L2 LINE L2 -20 3293 3197 189 74 0 0 chr13 15014785 15014812 -86858357 + (CTGGGG)n Simple_repeat Simple_repeat 6 32 0 23 0 0 0 chr13 15015020 15015043 -86858126 + GC_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr13 15015043 15015068 -86858101 + (CTG)n Simple_repeat Simple_repeat 1 25 0 1268 169 115 17 chr13 15016554 15016637 -86856532 + MER33 DNA MER1_type 1 74 -2511 1931 158 0 3 chr13 15016637 15016940 -86856229 + AluJo SINE Alu 1 302 -10 1268 169 115 17 chr13 15016940 15017151 -86856018 + MER33 DNA MER1_type 74 324 0 238 325 78 12 chr13 15017354 15017520 -86855649 - L2 LINE L2 -1148 2166 1990 210 273 83 58 chr13 15017649 15017770 -86855399 + L2 LINE L2 3169 3292 -21 2345 78 3 0 chr13 15017844 15018159 -86855010 + AluSp SINE Alu 1 316 0 821 215 58 50 chr13 15018834 15019076 -86854093 - MER46C DNA MER2_type 0 338 95 1726 108 0 4 chr13 15019087 15019319 -86853850 - AluJb SINE Alu -81 231 1 835 117 105 146 chr13 15019358 15019605 -86853564 + L1MB3 LINE L1 5942 6178 -5 303 226 0 0 chr13 15019616 15019678 -86853491 - MER46C DNA MER2_type -274 64 3 2080 98 47 17 chr13 15020382 15020678 -86852491 + AluSx SINE Alu 1 305 -7 2239 101 9 22 chr13 15020678 15020995 -86852174 + AluSq SINE Alu 1 313 0 2062 110 3 67 chr13 15021101 15021429 -86851740 - AluSx SINE Alu -5 307 1 277 308 75 25 chr13 15021490 15021610 -86851559 - MIR SINE MIR -66 142 17 335 259 121 26 chr13 15022180 15022274 -86850895 + L2 LINE L2 3187 3295 -18 2222 110 0 0 chr13 15022274 15022565 -86850604 - AluSx SINE Alu -21 291 1 335 259 121 26 chr13 15022565 15022586 -86850583 + L2 LINE L2 3295 3313 0 28 29 0 0 chr13 15023441 15023476 -86849693 + AT_rich Low_complexity Low_complexity 1 35 0 2192 114 13 0 chr13 15023548 15023871 -86849298 + AluSx SINE Alu 10 336 0 2116 116 0 7 chr13 15023889 15024219 -86848950 - AluSx SINE Alu 0 328 1 1398 102 38 42 chr13 15025031 15025267 -86847902 - L1MA6 LINE L1 -4 6296 6062 1345 91 5 0 chr13 15025269 15025455 -86847714 + L1MA6 LINE L1 5791 5977 -323 1226 119 0 0 chr13 15025489 15025657 -86847512 + AluSp SINE Alu 137 304 -9 186 43 0 0 chr13 15025658 15025681 -86847488 + (CA)n Simple_repeat Simple_repeat 2 24 0 256 270 124 11 chr13 15026510 15026599 -86846570 - Charlie4 DNA MER1_type 0 1961 1863 2226 105 0 40 chr13 15026768 15027091 -86846078 + AluSg SINE Alu 1 310 0 2168 101 21 0 chr13 15027512 15027798 -86845371 - AluSx SINE Alu -20 292 1 2089 125 0 16 chr13 15027887 15028190 -86844979 - AluSx SINE Alu -14 298 1 2326 88 0 10 chr13 15028442 15028777 -86844392 + AluSq SINE Alu 6 313 0 2195 38 27 0 chr13 15028789 15028916 -86844253 + AluY SINE Alu 1 123 -188 333 0 0 0 chr13 15028916 15028953 -86844216 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 2195 38 27 0 chr13 15028953 15029088 -86844081 + AluY SINE Alu 123 270 -41 2144 117 7 7 chr13 15031280 15031589 -86841580 - AluSq SINE Alu -4 309 1 2008 139 3 55 chr13 15031765 15031990 -86841179 - MER7A DNA MER2_type -2712 326 91 1888 136 0 7 chr13 15031990 15032269 -86840900 + AluSx SINE Alu 1 277 -35 270 0 0 0 chr13 15032274 15032304 -86840865 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2008 139 3 55 chr13 15032304 15032417 -86840752 - MER7A DNA MER2_type -2951 87 2 450 215 102 96 chr13 15032611 15032788 -86840381 + MER20B DNA MER1_type 2 179 -604 708 261 84 31 chr13 15033816 15034042 -86839127 - MIR SINE MIR -23 239 2 607 299 33 9 chr13 15034440 15034654 -86838515 - L2 LINE L2 -745 2569 2351 279 282 0 14 chr13 15036671 15036742 -86836427 + MIR SINE MIR 193 262 0 446 264 208 11 chr13 15036973 15037348 -86835821 + L1M4 LINE L1 2518 2966 -3180 2486 64 0 0 chr13 15037352 15037647 -86835522 - AluY SINE Alu -16 295 1 1109 142 12 0 chr13 15037647 15037816 -86835353 - AluJb SINE Alu -6 306 136 195 115 77 0 chr13 15037818 15037870 -86835299 + CT-rich Low_complexity Low_complexity 5 60 0 276 30 0 0 chr13 15037893 15037926 -86835243 + (TC)n Simple_repeat Simple_repeat 2 34 0 771 135 18 0 chr13 15037926 15038037 -86835132 - AluJb SINE Alu -198 114 2 237 265 81 52 chr13 15038037 15038173 -86834996 + L1M4 LINE L1 2981 3120 -3026 788 184 0 37 chr13 15038174 15038310 -86834859 + FLAM_C SINE Alu 2 132 -1 255 230 91 18 chr13 15038352 15038517 -86834652 + L1M4 LINE L1 3219 3395 -2751 1455 148 68 34 chr13 15038572 15038835 -86834334 - AluJo SINE Alu -20 292 21 925 259 58 99 chr13 15038850 15039066 -86834103 + L1M4 LINE L1 3410 3633 -2513 2376 89 3 0 chr13 15039066 15039370 -86833799 - AluSp SINE Alu -8 305 1 925 259 58 99 chr13 15039370 15039979 -86833190 + L1M4 LINE L1 3633 4201 -1945 1953 127 14 7 chr13 15039986 15040278 -86832891 + AluSx SINE Alu 1 294 -18 4426 227 69 37 chr13 15040290 15040487 -86832682 + L1M4 LINE L1 2 191 -6351 973 202 12 17 chr13 15040487 15040660 -86832509 - FAM SINE Alu -3 172 1 4426 227 69 37 chr13 15040660 15041718 -86831451 + L1M4 LINE L1 191 1298 -5244 * 15071 166 31 45 chr13 15041717 15043864 -86829305 + L1MA4A LINE L1 1 2178 -4827 1982 148 0 10 chr13 15043864 15044169 -86829000 + AluSx SINE Alu 2 303 -9 210 105 0 0 chr13 15044176 15044214 -86828955 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 15071 166 31 45 chr13 15044214 15045044 -86828125 + L1MA4A LINE L1 2184 3025 -3980 2245 81 0 7 chr13 15045044 15045374 -86827795 - AluY SINE Alu 0 328 1 15071 166 31 45 chr13 15045374 15048625 -86824544 + L1MA4A LINE L1 3025 6322 -683 1869 154 3 3 chr13 15048625 15048911 -86824258 - AluJo SINE Alu -26 286 1 15071 166 31 45 chr13 15048911 15049754 -86823415 + L1MA4A LINE L1 6322 6986 -19 1923 128 3 51 chr13 15049754 15050067 -86823102 + AluSg SINE Alu 1 298 -12 1051 193 28 46 chr13 15050086 15050371 -86822798 + L1M4 LINE L1 1264 1543 -4999 2352 93 0 0 chr13 15050388 15050688 -86822481 + AluSx SINE Alu 1 300 -12 1417 219 161 49 chr13 15050693 15051309 -86821860 + L1M4 LINE L1 1760 2444 -4202 414 272 69 42 chr13 15051521 15051738 -86821431 + LTR33A LTR ERVL 299 521 -2 665 295 33 35 chr13 15051738 15051968 -86821201 + L1ME3A LINE L1 5263 5509 -655 2101 135 0 0 chr13 15051968 15052271 -86820898 - AluSg SINE Alu -7 303 1 665 295 33 35 chr13 15052271 15052407 -86820762 + L1ME3A LINE L1 5509 5644 -520 378 284 0 47 chr13 15052457 15052605 -86820564 + MER112 DNA MER1_type 2 142 -118 2229 125 0 0 chr13 15052654 15052958 -86820211 - AluSg SINE Alu -6 304 1 385 272 0 0 chr13 15052994 15053086 -86820083 + MER112 DNA MER1_type 168 259 -1 659 265 53 38 chr13 15053086 15053291 -86819878 + L1ME3A LINE L1 5676 5890 -272 1694 143 111 7 chr13 15053291 15053570 -86819599 + AluSg SINE Alu 1 308 -2 659 265 53 38 chr13 15053570 15053633 -86819536 + L1ME3A LINE L1 5890 5951 -211 226 302 103 69 chr13 15053687 15053803 -86819366 + L1ME3A LINE L1 5963 6082 -88 283 310 216 0 chr13 15053905 15054076 -86819093 + L3 LINE CR1 320 527 -1050 384 187 53 0 chr13 15054077 15054152 -86819017 - MER116 DNA Mariner 0 80 2 2137 104 0 63 chr13 15054268 15054584 -86818585 - AluSx SINE Alu -16 296 1 2060 138 0 3 chr13 15054713 15055017 -86818152 + AluSx SINE Alu 1 303 -9 186 349 111 24 chr13 15055029 15055370 -86817799 - L2 LINE L2 -962 2352 1982 198 152 87 22 chr13 15055372 15055418 -86817751 - L2 LINE L2 -4 3309 3261 320 274 124 26 chr13 15055446 15055599 -86817570 + L3 LINE CR1 617 784 -793 3127 120 127 72 chr13 15055602 15056184 -86816985 + LTR18B LTR ERVL 1 614 0 1410 211 10 30 chr13 15056197 15056496 -86816673 + HERVL18 LTR ERVL 5 297 -5750 785 188 17 1 chr13 15056490 15056724 -86816445 + HERVL18 LTR ERVL 492 763 -5284 * 303 223 0 53 chr13 15056730 15056824 -86816345 + HERVL18 LTR ERVL 874 962 -5085 1068 214 6 10 chr13 15056824 15057173 -86815996 + HERVL18 LTR ERVL 1401 1810 -4237 425 164 31 13 chr13 15057172 15057376 -86815793 + HERVL18 LTR ERVL 2119 2452 -3595 * 4622 176 29 3 chr13 15057373 15058127 -86815042 + HERVL18 LTR ERVL 2718 3491 -2556 3176 127 88 67 chr13 15058309 15058910 -86814259 + LTR18B LTR ERVL 1 614 0 627 189 63 47 chr13 15058949 15059140 -86814029 + L1MC5 LINE L1 7271 7464 -497 505 91 39 13 chr13 15059205 15059282 -86813887 + L1MC2 LINE L1 6251 6329 -15 260 315 141 13 chr13 15059619 15059768 -86813401 - MIR3 SINE MIR -35 173 6 823 137 111 80 chr13 15059851 15060005 -86813164 + MER33 DNA MER1_type 3 168 -2417 2345 94 0 3 chr13 15060005 15060303 -86812866 + AluSx SINE Alu 1 297 -15 823 137 111 80 chr13 15060303 15060374 -86812795 + MER33 DNA MER1_type 168 235 -89 428 202 109 118 chr13 15060380 15060468 -86812701 + L1MC4 LINE L1 7620 7707 -335 2278 172 38 81 chr13 15060468 15060996 -86812173 - MLT1D LTR MaLR 0 505 1 428 202 109 118 chr13 15060996 15061273 -86811896 + L1MC4 LINE L1 7707 7982 -60 1982 125 0 17 chr13 15061414 15061702 -86811467 + AluSx SINE Alu 1 283 -29 2918 148 107 53 chr13 15062241 15062822 -86810347 - LTR9 LTR ERV1 0 612 1 492 323 39 22 chr13 15063503 15063732 -86809437 + L1MEd LINE L1 523 755 -5364 2243 123 0 16 chr13 15065854 15066162 -86807007 + AluSq SINE Alu 1 303 -10 2239 85 0 47 chr13 15066270 15066587 -86806582 - AluY SINE Alu -9 302 1 314 310 61 5 chr13 15066666 15066879 -86806290 + L1MEd LINE L1 924 1148 -4971 926 286 40 28 chr13 15066914 15067410 -86805759 + L1MEd LINE L1 1164 1665 -4645 187 284 149 14 chr13 15067728 15067802 -86805367 - MIR SINE MIR -104 158 75 2291 122 0 0 chr13 15067844 15068156 -86805013 + AluSx SINE Alu 1 312 0 206 302 19 0 chr13 15069173 15069226 -86803943 + L2 LINE L2 3215 3268 -4 1697 142 49 59 chr13 15069384 15069672 -86803497 - AluSx SINE Alu -27 285 1 22 70 0 0 chr13 15070664 15070707 -86802462 + AT_rich Low_complexity Low_complexity 1 43 0 1372 100 5 5 chr13 15070831 15071021 -86802148 + AluSp SINE Alu 124 313 0 1532 176 0 69 chr13 15071032 15071367 -86801802 + AluJb SINE Alu 1 312 0 2231 106 0 3 chr13 15071492 15071793 -86801376 - AluSq SINE Alu -13 300 1 1845 221 50 38 chr13 15072324 15072795 -86800374 + L1M4 LINE L1 3507 3947 -2199 1573 193 0 4 chr13 15072795 15073064 -86800105 + AluJb SINE Alu 1 268 -44 1845 221 50 38 chr13 15073064 15073399 -86799770 + L1M4 LINE L1 3947 4277 -1869 2144 120 0 0 chr13 15073402 15073723 -86799446 + AluSx SINE Alu 1 321 0 2134 133 0 0 chr13 15073726 15074034 -86799135 + AluY SINE Alu 1 308 -3 661 192 0 0 chr13 15074054 15074174 -86798995 + FLAM_A SINE Alu 1 120 -13 1813 153 30 14 chr13 15074210 15074505 -86798664 + AluJb SINE Alu 11 310 -2 1244 102 0 0 chr13 15074534 15074700 -86798469 + AluSg/x SINE Alu 135 300 -10 1075 138 12 6 chr13 15074874 15075034 -86798135 - AluSp SINE Alu -20 293 133 326 304 188 14 chr13 15075036 15075174 -86797995 - MIR SINE MIR -97 165 4 2105 141 60 5 chr13 15075187 15075569 -86797600 + L1PA16 LINE L1 5764 6166 0 22 35 0 0 chr13 15075569 15075598 -86797571 + AT_rich Low_complexity Low_complexity 1 29 0 257 232 0 0 chr13 15075620 15075676 -86797493 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 990 149 0 0 chr13 15075940 15076102 -86797067 + AluSg/x SINE Alu 143 304 0 202 178 79 160 chr13 15076995 15077265 -86795904 + L2 LINE L2 3019 3311 -2 210 37 0 0 chr13 15077299 15077326 -86795843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2231 92 0 0 chr13 15077328 15077611 -86795558 - AluSq SINE Alu -30 283 1 1647 108 46 23 chr13 15077670 15077930 -86795239 - MER1B DNA MER1_type -73 266 1 370 59 20 59 chr13 15078543 15078645 -86794524 + (TA)n Simple_repeat Simple_repeat 1 98 0 2191 79 3 7 chr13 15078645 15078935 -86794234 - AluSc SINE Alu -20 289 1 1240 75 0 0 chr13 15079282 15079443 -86793726 - AluY SINE Alu 0 311 151 21 36 0 0 chr13 15079821 15079849 -86793320 + AT_rich Low_complexity Low_complexity 1 28 0 2260 98 0 19 chr13 15079921 15080237 -86792932 - AluSx SINE Alu -2 310 1 496 298 53 58 chr13 15080876 15081003 -86792166 + MIR3 SINE MIR 16 143 -65 1985 123 3 41 chr13 15081003 15081319 -86791850 + AluSx SINE Alu 1 304 -8 496 298 53 58 chr13 15081319 15081379 -86791790 + MIR3 SINE MIR 143 202 -6 2253 44 0 11 chr13 15081494 15081764 -86791405 + AluY SINE Alu 1 267 -44 187 208 97 56 chr13 15082562 15082634 -86790535 - MIR3 SINE MIR -133 75 1 2017 141 3 0 chr13 15082703 15082994 -86790175 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 15083208 15083231 -86789938 + AT_rich Low_complexity Low_complexity 1 23 0 557 191 203 42 chr13 15084880 15084998 -86788171 + MER5C DNA MER1_type 1 99 -225 1673 175 52 7 chr13 15084998 15085284 -86787885 - AluSg SINE Alu -11 299 1 557 191 203 42 chr13 15085284 15085338 -86787831 + MER5C DNA MER1_type 99 143 -181 182 36 0 36 chr13 15085347 15085375 -86787794 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2035 122 18 7 chr13 15085375 15085651 -86787518 - AluSx SINE Alu -28 284 3 557 191 203 42 chr13 15085651 15085713 -86787456 + MER5C DNA MER1_type 143 274 -50 1902 145 48 0 chr13 15085732 15086022 -86787147 + AluSx SINE Alu 1 304 -8 301 345 78 14 chr13 15086056 15086198 -86786971 + L2 LINE L2 2903 3053 -219 1477 172 79 29 chr13 15087462 15087741 -86785428 + AluJo SINE Alu 3 295 -17 2046 140 3 13 chr13 15087871 15088179 -86784990 - AluSx SINE Alu -7 305 1 2281 64 0 3 chr13 15088545 15088827 -86784342 + AluY SINE Alu 1 281 -30 2091 99 3 46 chr13 15089074 15089376 -86783793 - AluSx SINE Alu -10 302 14 244 274 36 48 chr13 15089797 15089881 -86783288 - L3 LINE CR1 -114 1463 1381 2220 123 0 0 chr13 15089903 15090211 -86782958 + AluSx SINE Alu 1 308 -4 231 330 148 0 chr13 15090335 15090423 -86782746 - L2 LINE L2 -4 3268 3168 614 158 12 33 chr13 15090777 15091036 -86782133 + AluJo SINE Alu 1 303 -9 2030 173 35 5 chr13 15091247 15091623 -86781546 - MLT1B LTR MaLR -1 389 3 4816 186 53 77 chr13 15091626 15093030 -86780139 - MLT1B-int LTR MaLR -1 1370 1 1837 144 38 12 chr13 15093032 15093373 -86779796 - MLT1B LTR MaLR -2 388 39 309 315 73 18 chr13 15093459 15093624 -86779545 - L2 LINE L2 0 3313 3140 392 380 80 9 chr13 15093728 15093954 -86779215 - L2 LINE L2 -384 2930 2689 374 269 39 10 chr13 15093954 15094058 -86779111 + L1ME3A LINE L1 6000 6106 -64 586 307 131 13 chr13 15094059 15094372 -86778797 - L2 LINE L2 -737 2577 2228 360 274 68 8 chr13 15094403 15094520 -86778649 - L2 LINE L2 -6 3307 3184 550 315 49 36 chr13 15094566 15094896 -86778273 - L2 LINE L2 -278 3035 2633 709 293 174 26 chr13 15094905 15095481 -86777688 - L2 LINE L2 -1112 2202 1542 1068 156 106 28 chr13 15096198 15096416 -86776753 + MER46A DNA MER2_type 1 235 -1 35 0 0 0 chr13 15097349 15097384 -86775785 + AT_rich Low_complexity Low_complexity 1 35 0 2254 104 7 0 chr13 15097512 15097811 -86775358 - AluSx SINE Alu -11 301 1 185 372 58 0 chr13 15098057 15098143 -86775026 + MIR SINE MIR 49 139 -123 2414 63 0 3 chr13 15099764 15100063 -86773106 + AluY SINE Alu 1 298 -13 21 0 0 0 chr13 15100598 15100619 -86772550 + AT_rich Low_complexity Low_complexity 1 21 0 517 194 29 10 chr13 15101551 15101654 -86771515 + FLAM_A SINE Alu 12 116 -26 2265 95 0 20 chr13 15101866 15102171 -86770998 + AluSx SINE Alu 1 299 -13 1302 188 51 51 chr13 15102182 15102458 -86770711 + AluJo SINE Alu 6 281 -31 2160 112 0 3 chr13 15102756 15103050 -86770119 - AluSx SINE Alu -19 293 1 22 70 0 0 chr13 15104614 15104657 -86768512 + AT_rich Low_complexity Low_complexity 1 43 0 305 191 25 134 chr13 15105448 15105605 -86767564 + L1ME3A LINE L1 5823 5962 -208 434 285 40 45 chr13 15105692 15105892 -86767277 + L1ME3A LINE L1 5966 6164 -6 1063 159 35 89 chr13 15106182 15106385 -86766784 + AluJb SINE Alu 46 234 -78 2004 128 24 3 chr13 15106385 15106683 -86766486 + AluSq SINE Alu 1 304 -9 1063 159 35 89 chr13 15106683 15106736 -86766433 + AluJb SINE Alu 234 288 -24 25 31 0 0 chr13 15106857 15106889 -86766280 + AT_rich Low_complexity Low_complexity 1 32 0 522 143 0 19 chr13 15107219 15107324 -86765845 + L1MB8 LINE L1 6071 6173 -5 2306 95 0 16 chr13 15107385 15107700 -86765469 + AluY SINE Alu 1 310 -1 591 263 38 8 chr13 15107879 15108115 -86765054 + MER46C DNA MER2_type 81 323 -15 2166 110 0 0 chr13 15108706 15109005 -86764164 + AluSx SINE Alu 1 299 -13 30 0 0 0 chr13 15109286 15109316 -86763853 + AT_rich Low_complexity Low_complexity 1 30 0 1986 152 3 3 chr13 15110121 15110418 -86762751 + AluSx SINE Alu 1 297 -15 2132 124 3 0 chr13 15110418 15110716 -86762453 + AluSg SINE Alu 1 299 -11 1557 91 17 4 chr13 15110731 15110962 -86762207 + L1PB1 LINE L1 5896 6129 -22 2056 131 0 0 chr13 15111771 15112076 -86761093 - AluJb SINE Alu 0 305 1 32 0 0 0 chr13 15112274 15112306 -86760863 + AT_rich Low_complexity Low_complexity 1 32 0 253 200 0 0 chr13 15112508 15112553 -86760616 + AluSc SINE Alu 127 171 -128 954 144 0 0 chr13 15112555 15112687 -86760482 + AluJo/FRAM SINE Alu 156 287 -25 300 260 63 34 chr13 15112735 15112951 -86760218 + L1MC4 LINE L1 7036 7212 -749 489 237 128 60 chr13 15113028 15113623 -86759546 + L1MC5 LINE L1 7283 7917 -44 476 285 8 49 chr13 15113696 15113819 -86759350 + MER5B DNA MER1_type 1 118 -60 273 75 0 0 chr13 15113822 15113862 -86759307 + (T)n Simple_repeat Simple_repeat 1 40 0 272 173 19 0 chr13 15113866 15113918 -86759251 + MER5B DNA MER1_type 125 177 -1 418 323 29 31 chr13 15114202 15114413 -86758756 - MIR SINE MIR -50 212 3 2271 86 21 0 chr13 15114795 15115085 -86758084 - AluSg SINE Alu -14 296 1 1522 146 104 19 chr13 15115894 15116202 -86756967 + MER2 DNA MER2_type 7 340 -5 393 130 26 26 chr13 15116256 15116333 -86756836 - MADE1 DNA Mariner -1 79 3 212 57 0 29 chr13 15116668 15116703 -86756466 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2324 104 0 3 chr13 15116732 15117039 -86756130 - AluSx SINE Alu -5 307 2 192 253 121 0 chr13 15117584 15117667 -86755502 - MIR SINE MIR 0 262 170 1483 268 51 35 chr13 15117770 15118315 -86754854 + MLT1E LTR MaLR 23 576 -17 1905 194 63 21 chr13 15118755 15119229 -86753940 - MLT1D LTR MaLR -9 496 3 702 284 104 68 chr13 15119366 15119593 -86753576 - L1M4 LINE L1 -1092 5054 4837 2449 80 0 6 chr13 15119593 15119904 -86753265 - AluSc SINE Alu 0 309 1 702 284 104 68 chr13 15119904 15119925 -86753244 - L1M4 LINE L1 -1309 4837 4818 697 157 35 9 chr13 15119925 15120040 -86753129 - FLAM_C SINE Alu -15 118 1 702 284 104 68 chr13 15120040 15120307 -86752862 - L1M4 LINE L1 -1328 4818 4519 733 138 111 3 chr13 15120531 15120755 -86752414 - AluJb SINE Alu -6 306 1 824 174 0 0 chr13 15122586 15122718 -86750451 - FLAM_C SINE Alu 0 133 2 22 35 0 0 chr13 15124075 15124104 -86749065 + AT_rich Low_complexity Low_complexity 1 29 0 228 67 0 0 chr13 15124265 15124295 -86748874 + (TA)n Simple_repeat Simple_repeat 2 31 0 1582 122 21 14 chr13 15124806 15125085 -86748084 + AluSx SINE Alu 1 281 -31 273 208 13 52 chr13 15126391 15126468 -86746701 + MIR SINE MIR 183 256 -6 424 245 179 72 chr13 15126819 15127008 -86746161 - L1MC4 LINE L1 -537 7505 7338 2357 95 0 0 chr13 15127008 15127314 -86745855 + AluSq SINE Alu 1 306 -7 424 245 179 72 chr13 15127314 15127581 -86745588 - L1MC4 LINE L1 -704 7338 7000 1108 143 19 184 chr13 15127587 15127986 -86745183 - L1MC3 LINE L1 -8 7777 7467 2176 124 3 0 chr13 15127986 15128292 -86744877 - AluSx SINE Alu -5 307 1 1108 143 19 184 chr13 15128292 15128366 -86744803 - L1MC3 LINE L1 -318 7467 7382 250 61 0 0 chr13 15128366 15128399 -86744770 + MLT1A2 LTR MaLR 281 313 -61 1336 185 0 0 chr13 15128403 15128625 -86744544 - AluJb SINE Alu -4 308 87 311 107 36 0 chr13 15128662 15128718 -86744451 + T-rich Low_complexity Low_complexity 2 59 0 1840 179 0 10 chr13 15128740 15129036 -86744133 - AluJb SINE Alu -18 294 2 633 264 68 45 chr13 15129113 15129550 -86743619 - MER39 LTR ERV1 0 629 39 3143 162 29 109 chr13 15129568 15130131 -86743038 + L1 LINE L1 4275 4882 -1264 1972 136 0 0 chr13 15130131 15130403 -86742766 + AluSx SINE Alu 7 278 -34 243 0 0 0 chr13 15130408 15130435 -86742734 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3143 162 29 109 chr13 15130435 15130506 -86742663 + L1 LINE L1 4886 4961 -1185 1926 138 7 0 chr13 15130506 15130782 -86742387 - AluSg SINE Alu -32 278 1 2226 126 0 3 chr13 15130786 15131095 -86742074 - AluSx SINE Alu -4 308 1 3143 162 29 109 chr13 15131095 15131409 -86741760 + L1 LINE L1 4964 5158 -988 408 102 0 175 chr13 15131406 15131515 -86741654 + L1M LINE L1 5255 5327 -973 * 2102 119 7 3 chr13 15131515 15131808 -86741361 - AluSc SINE Alu -11 298 5 408 102 0 175 chr13 15131808 15131864 -86741305 + L1M LINE L1 5327 5391 -909 297 104 0 21 chr13 15131845 15131893 -86741276 + L1MB2 LINE L1 4876 4922 -1224 * 337 200 0 0 chr13 15131893 15131948 -86741221 + Alu SINE Alu 1 55 -253 1997 125 4 0 chr13 15131950 15132275 -86740894 + AluSq SINE Alu 3 328 0 951 172 23 50 chr13 15132275 15132496 -86740673 + MSTB2 LTR MaLR 240 454 -3 326 171 0 0 chr13 15134044 15134114 -86739055 + L1MB4 LINE L1 6111 6180 0 655 184 12 212 chr13 15134117 15134256 -86738913 + L1MB2 LINE L1 4995 5160 -986 2000 142 0 0 chr13 15134256 15134537 -86738632 + AluSx SINE Alu 1 281 -31 292 158 18 0 chr13 15134537 15134594 -86738575 + Alu SINE Alu 244 301 0 655 184 12 212 chr13 15134594 15134816 -86738353 + L1MB2 LINE L1 5158 5329 -817 1741 117 41 63 chr13 15134818 15135135 -86738034 + AluJb SINE Alu 3 312 0 243 0 0 0 chr13 15135141 15135168 -86738001 + (TA)n Simple_repeat Simple_repeat 2 28 0 3851 146 72 45 chr13 15135259 15135754 -86737415 + L1MB2 LINE L1 5322 5849 -322 598 217 8 0 chr13 15135754 15135874 -86737295 + FLAM_C SINE Alu 1 121 -12 3851 146 72 45 chr13 15135874 15136199 -86736970 + L1MB2 LINE L1 5849 6164 -7 858 308 13 0 chr13 15137576 15137800 -86735369 + MIR SINE MIR 2 228 -34 1541 199 21 0 chr13 15138128 15138414 -86734755 + AluJo SINE Alu 1 292 -20 2195 110 0 28 chr13 15138416 15138734 -86734435 + AluSx SINE Alu 1 309 -3 201 242 16 0 chr13 15139029 15139091 -86734078 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 189 0 0 0 chr13 15139127 15139148 -86734021 + (TC)n Simple_repeat Simple_repeat 2 22 0 2219 121 0 6 chr13 15139148 15139462 -86733707 - AluSx SINE Alu 0 312 1 1902 200 17 3 chr13 15139677 15140037 -86733132 + MLT1A1 LTR MaLR 1 365 0 40 0 0 0 chr13 15140059 15140099 -86733070 + AT_rich Low_complexity Low_complexity 1 40 0 208 270 81 0 chr13 15140208 15140282 -86732887 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 775 258 22 4 chr13 15140285 15140514 -86732655 - L1MC4a LINE L1 -1868 5940 5708 220 295 45 36 chr13 15140587 15140699 -86732470 + L2 LINE L2 2185 2297 -1017 1178 134 8 5 chr13 15141503 15141876 -86731293 + LTR47B LTR ERVL 1 443 0 3940 84 21 3 chr13 15141975 15142545 -86730624 + L1PA13 LINE L1 5564 6143 -20 216 0 0 0 chr13 15142549 15142573 -86730596 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1442 137 15 27 chr13 15142757 15143019 -86730150 - THE1C LTR MaLR 0 375 117 1451 157 0 130 chr13 15143174 15143371 -86729798 - AluJo SINE Alu -1 301 167 1976 136 0 7 chr13 15143371 15143658 -86729511 - AluSx SINE Alu -27 285 1 1451 157 0 130 chr13 15143658 15143805 -86729364 - AluJo SINE Alu -135 167 2 1918 125 76 0 chr13 15143846 15144134 -86729035 + AluSg SINE Alu 1 310 0 1931 221 41 32 chr13 15144260 15144956 -86728213 - L1ME1 LINE L1 -306 5860 5158 704 189 39 102 chr13 15144956 15145181 -86727988 + L1MA4 LINE L1 5995 6165 -135 726 191 8 8 chr13 15145181 15145307 -86727862 + FLAM_A SINE Alu 1 126 -7 704 189 39 102 chr13 15145307 15145426 -86727743 + L1MA4 LINE L1 6165 6290 -10 * 2997 235 30 26 chr13 15145425 15146221 -86726948 - L1ME1 LINE L1 -968 5178 4387 2244 105 3 3 chr13 15146221 15146515 -86726654 - AluSc SINE Alu -15 294 1 2997 235 30 26 chr13 15146515 15146565 -86726604 - L1ME1 LINE L1 -1759 4387 4339 1981 153 0 7 chr13 15146565 15146860 -86726309 + AluSx SINE Alu 1 293 -19 2997 235 30 26 chr13 15146860 15147064 -86726105 - L1ME1 LINE L1 -1807 4339 4122 374 217 45 54 chr13 15147069 15147290 -86725879 - L1ME1 LINE L1 -2900 3246 3028 198 0 0 0 chr13 15147300 15147322 -86725847 + (T)n Simple_repeat Simple_repeat 1 22 0 2032 91 52 21 chr13 15147366 15147652 -86725517 + AluY SINE Alu 1 295 -16 3302 98 4 2 chr13 15147838 15148319 -86724850 + MER41B LTR ERV1 154 635 0 889 202 99 34 chr13 15148319 15148552 -86724617 - MER57A-int LTR ERV1 -7287 250 3 2007 195 33 0 chr13 15148554 15148944 -86724225 - MER57A LTR ERV1 0 403 1 233 218 55 0 chr13 15148946 15149001 -86724168 - MER45 DNA AcHobo -878 75 18 1657 179 26 11 chr13 15149001 15149353 -86723816 + MLT1A1 LTR MaLR 1 357 -8 2247 131 0 0 chr13 15149481 15149793 -86723376 + AluSx SINE Alu 1 312 0 348 299 116 42 chr13 15149793 15150077 -86723092 + L1ME4a LINE L1 5737 6041 -80 257 0 30 0 chr13 15150684 15150717 -86722452 + (TA)n Simple_repeat Simple_repeat 2 35 0 2129 109 7 7 chr13 15150717 15151011 -86722158 - AluSq SINE Alu -18 295 2 462 78 70 0 chr13 15151669 15151797 -86721372 + (TA)n Simple_repeat Simple_repeat 2 138 0 24 0 0 0 chr13 15151797 15151821 -86721348 + AT_rich Low_complexity Low_complexity 1 24 0 682 33 44 50 chr13 15151821 15152002 -86721167 + (TA)n Simple_repeat Simple_repeat 1 180 0 2121 111 32 0 chr13 15152002 15152282 -86720887 - AluSx SINE Alu -23 289 1 361 109 0 0 chr13 15153199 15153254 -86719915 - MSTA LTR MaLR 0 428 374 1718 132 150 6 chr13 15153322 15153649 -86719520 - MSTA LTR MaLR -54 374 1 2085 122 21 0 chr13 15154012 15154300 -86718869 - AluSg SINE Alu -14 296 3 2054 135 3 0 chr13 15154561 15154864 -86718305 - AluSp SINE Alu -9 304 1 2306 106 0 0 chr13 15154965 15155268 -86717901 + AluSc SINE Alu 4 306 -3 1612 184 3 11 chr13 15155349 15155632 -86717537 + AluJb SINE Alu 1 281 -31 2045 115 0 14 chr13 15155632 15155926 -86717243 - AluSc SINE Alu -18 291 1 1000 122 0 0 chr13 15156122 15156261 -86716908 - AluSq/x SINE Alu -173 139 1 3009 167 20 19 chr13 15156262 15157016 -86716153 - L1MA8 LINE L1 -461 5830 5074 2470 113 68 5 chr13 15157016 15157416 -86715753 - MSTB LTR MaLR 0 426 2 3009 167 20 19 chr13 15157416 15157452 -86715717 - L1MA8 LINE L1 -1217 5074 5040 555 16 0 0 chr13 15157462 15157526 -86715643 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 954 182 53 0 chr13 15157526 15157696 -86715473 - AluSg/x SINE Alu 0 312 134 735 159 22 0 chr13 15157699 15157837 -86715332 - L1MA8 LINE L1 -1094 5052 4912 204 97 0 0 chr13 15157838 15157869 -86715300 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 774 184 21 7 chr13 15157873 15158014 -86715155 - AluJb SINE Alu -37 275 133 1335 183 3 99 chr13 15158014 15158348 -86714821 - AluJb SINE Alu 0 302 1 1304 147 25 4 chr13 15158353 15158591 -86714578 - MSTB2 LTR MaLR -214 243 1 305 378 7 14 chr13 15158685 15158702 -86714467 + L2 LINE L2 2564 2580 -734 2493 189 42 12 chr13 15158702 15159060 -86714109 + LTR42 LTR ERVL 1 378 -117 2319 96 6 3 chr13 15159060 15159372 -86713797 - AluSp SINE Alu 0 313 1 2493 189 42 12 chr13 15159372 15159494 -86713675 + LTR42 LTR ERVL 378 495 0 305 378 7 14 chr13 15159494 15159619 -86713550 + L2 LINE L2 2580 2705 -609 350 407 19 0 chr13 15159630 15159792 -86713377 - L2 LINE L2 -4 3268 3104 1437 201 26 63 chr13 15159795 15160172 -86712997 + MLT2D LTR ERVL 1 363 -51 1070 157 30 0 chr13 15160172 15160369 -86712800 + MER2 DNA MER2_type 4 206 -139 319 122 0 0 chr13 15160447 15160496 -86712673 + MLT2D LTR ERVL 472 520 0 281 257 26 26 chr13 15160603 15160716 -86712453 + MER117 DNA MER1_type 12 124 -73 284 294 69 0 chr13 15160919 15161021 -86712148 - MIR SINE MIR -121 141 33 1511 150 21 25 chr13 15161185 15161425 -86711744 - AluJo SINE Alu -73 239 1 309 329 29 0 chr13 15161483 15161623 -86711546 - MIR SINE MIR 0 262 119 2093 133 0 0 chr13 15161864 15162150 -86711019 - AluSc SINE Alu -23 286 1 7399 43 0 0 chr13 15162326 15163616 -86709553 + L1PA5 LINE L1 4865 6154 0 244 253 27 0 chr13 15163663 15163738 -86709431 + L1ME LINE L1 5528 5604 -517 437 158 0 88 chr13 15163777 15163836 -86709333 - L1MC5 LINE L1 -53 7908 7845 2675 101 8 11 chr13 15163836 15164212 -86708957 + THE1C LTR MaLR 1 375 0 10172 105 39 37 chr13 15164212 15165788 -86707381 + THE1C-int LTR MaLR 1 1580 0 2638 116 0 11 chr13 15165788 15166167 -86707002 + THE1C LTR MaLR 1 375 0 437 158 0 88 chr13 15166167 15166219 -86706950 - L1MC5 LINE L1 -113 7848 7805 318 231 157 0 chr13 15166359 15166467 -86706702 - L1ME3A LINE L1 0 6170 6046 625 165 59 83 chr13 15166484 15166738 -86706431 - L1MC5 LINE L1 -261 7700 7453 1209 207 53 57 chr13 15166749 15167139 -86706030 - L1MC5 LINE L1 -593 7368 6979 2279 92 0 7 chr13 15167139 15167152 -86706017 - AluSc SINE Alu 0 309 297 199 0 0 0 chr13 15167152 15167174 -86705995 + (TTTA)n Simple_repeat Simple_repeat 3 132 0 2279 92 0 7 chr13 15167174 15167455 -86705714 - AluSc SINE Alu -12 297 1 1209 207 53 57 chr13 15167455 15167538 -86705631 - L1MC5 LINE L1 -982 6979 6897 31 44 0 0 chr13 15167640 15167685 -86705484 + AT_rich Low_complexity Low_complexity 1 45 0 1755 166 21 0 chr13 15168707 15168991 -86704178 - AluJo SINE Alu -22 290 1 2311 84 3 0 chr13 15169732 15170030 -86703139 - AluSg1 SINE Alu -10 299 1 1824 214 74 11 chr13 15170471 15170944 -86702225 + MLT1D LTR MaLR 1 503 -2 200 253 161 23 chr13 15171620 15171707 -86701462 - L2 LINE L2 0 3313 3215 2272 104 7 7 chr13 15171708 15172017 -86701152 + AluSc SINE Alu 1 309 0 348 277 136 102 chr13 15173696 15174014 -86699155 - L1M2 LINE L1 -5659 1190 884 204 40 0 0 chr13 15174014 15174039 -86699130 + (CCG)n Simple_repeat Simple_repeat 3 27 0 348 277 136 102 chr13 15174039 15174340 -86698829 - L1M2 LINE L1 -5965 884 550 248 273 108 65 chr13 15176138 15176277 -86696892 - MIR3 SINE MIR -23 185 41 21 0 0 0 chr13 15177986 15178007 -86695162 + AT_rich Low_complexity Low_complexity 1 21 0 2145 111 34 0 chr13 15178143 15178440 -86694729 - AluSg SINE Alu -3 307 1 28 61 0 0 chr13 15178523 15178572 -86694597 + AT_rich Low_complexity Low_complexity 1 49 0 261 285 139 0 chr13 15178596 15178761 -86694408 - L1MC/D LINE L1 -2248 5560 5373 2204 98 0 10 chr13 15179274 15179581 -86693588 - AluSq SINE Alu -9 304 1 290 275 148 40 chr13 15179819 15179968 -86693201 + MIR SINE MIR 2 166 -96 568 197 61 0 chr13 15179968 15180100 -86693069 - L1MB7 LINE L1 0 6184 6045 267 163 0 0 chr13 15180122 15180171 -86692998 + L1MA5 LINE L1 5546 5594 -697 * 413 159 105 2 chr13 15180145 15180261 -86692908 + L1MA5 LINE L1 5958 6096 -204 2127 143 91 10 chr13 15180261 15180411 -86692758 - Tigger2 DNA MER2_type 0 2718 2582 1983 91 0 0 chr13 15180411 15180664 -86692505 - AluSq SINE Alu -60 253 1 2127 143 91 10 chr13 15180664 15180919 -86692250 - Tigger2 DNA MER2_type -136 2582 2280 377 143 0 0 chr13 15180917 15180973 -86692196 - Tigger2 DNA MER2_type -2649 69 14 * 1028 120 40 0 chr13 15180974 15181149 -86692020 + L1MA5 LINE L1 6114 6295 -5 296 294 12 0 chr13 15182236 15182321 -86690848 + L2 LINE L2 2438 2523 -791 22 0 0 0 chr13 15182340 15182362 -86690807 + AT_rich Low_complexity Low_complexity 1 22 0 343 198 10 0 chr13 15182848 15182916 -86690253 + AluS SINE Alu 2 57 -243 23 33 0 0 chr13 15183064 15183094 -86690075 + AT_rich Low_complexity Low_complexity 1 30 0 2979 207 102 4 chr13 15183094 15184053 -86689116 - L1ME2 LINE L1 -9 6089 5041 1933 129 16 32 chr13 15184056 15184366 -86688803 - AluJo SINE Alu -7 305 1 287 270 0 0 chr13 15184366 15184440 -86688729 - L1ME2 LINE L1 -1978 4102 4029 699 169 48 16 chr13 15184441 15184565 -86688604 + FLAM_A SINE Alu 1 128 -5 2065 91 6 72 chr13 15184567 15184886 -86688283 + AluSc SINE Alu 1 298 -11 338 229 10 10 chr13 15184940 15185036 -86688133 - L1ME2 LINE L1 -2045 4035 3940 22 35 0 0 chr13 15185082 15185111 -86688058 + AT_rich Low_complexity Low_complexity 1 29 0 2161 92 11 7 chr13 15185112 15185396 -86687773 - AluSg SINE Alu -25 285 1 871 186 14 0 chr13 15185510 15185650 -86687519 - FRAM SINE Alu -26 150 9 443 268 41 41 chr13 15185650 15185782 -86687387 - L1ME2 LINE L1 -4672 1589 1455 2471 87 0 0 chr13 15185782 15186093 -86687076 - AluY SINE Alu 0 311 1 443 268 41 41 chr13 15186093 15186154 -86687015 - L1ME2 LINE L1 -4805 1456 1396 402 201 129 110 chr13 15186241 15186283 -86686886 - L1ME2 LINE L1 -4863 1115 1075 2136 121 0 10 chr13 15186283 15186588 -86686581 - AluSg SINE Alu -8 302 1 402 201 129 110 chr13 15186588 15186656 -86686513 - L1ME2 LINE L1 -4903 1075 1046 2289 90 7 10 chr13 15186656 15186957 -86686212 + AluY SINE Alu 1 300 -11 402 201 129 110 chr13 15186957 15187054 -86686115 - L1ME2 LINE L1 -4932 1046 952 332 221 108 15 chr13 15187150 15187352 -86685817 - L1ME2 LINE L1 -5236 834 484 2092 117 7 10 chr13 15187480 15187780 -86685389 + AluSx SINE Alu 1 299 -13 476 276 125 53 chr13 15187881 15188320 -86684849 - L1ME2 LINE L1 -5597 473 12 37965 65 14 4 chr13 15189118 15195196 -86677973 - L1PA5 LINE L1 -2 6152 12 1481 259 75 60 chr13 15195433 15196082 -86677087 - MLT2F LTR ERVL -4 659 1 1877 232 71 35 chr13 15196387 15196922 -86676247 - ERVL LTR ERVL -360 5404 4851 727 233 88 18 chr13 15196939 15197167 -86676002 - L2 LINE L2 -1626 1688 1445 237 202 32 96 chr13 15197379 15197473 -86675696 + MIR SINE MIR 175 262 0 728 248 124 5 chr13 15197690 15197900 -86675269 + MIR SINE MIR 11 245 -17 297 351 73 20 chr13 15198376 15198527 -86674642 + L2 LINE L2 2582 2740 -574 2140 119 0 3 chr13 15198527 15198830 -86674339 - AluJb SINE Alu -8 304 3 1196 74 0 13 chr13 15199242 15199391 -86673778 - AluSq/x SINE Alu -165 147 1 742 173 12 36 chr13 15199399 15199567 -86673602 - L1MB8 LINE L1 0 6178 6015 1751 190 65 8 chr13 15199577 15199945 -86673224 + MSTD LTR MaLR 1 389 -7 3256 204 32 4 chr13 15199946 15201302 -86671867 - L1MB8 LINE L1 -185 5993 4602 2320 103 0 0 chr13 15201321 15201621 -86671548 - AluSx SINE Alu -12 300 1 213 281 151 41 chr13 15201702 15201848 -86671321 - MIR SINE MIR -98 164 3 931 222 73 28 chr13 15202000 15202288 -86670881 - L1ME3A LINE L1 -37 6116 5816 184 307 163 33 chr13 15202661 15202876 -86670293 + MIR SINE MIR 14 256 -6 2411 75 0 3 chr13 15203083 15203378 -86669791 - AluSq SINE Alu -19 294 1 344 288 50 25 chr13 15204485 15204683 -86668486 + MLT1L LTR MaLR 1 203 -412 275 214 127 40 chr13 15204692 15204818 -86668351 - L1ME3A LINE L1 -685 5462 5326 1071 156 53 97 chr13 15204887 15205247 -86667922 - MLT1A1 LTR MaLR -3 362 19 942 237 35 9 chr13 15205305 15205533 -86667636 + Tigger7 DNA MER2_type 1 234 -471 297 197 42 0 chr13 15205534 15205605 -86667564 + Tigger7 DNA MER2_type 2482 2555 -32 318 270 98 42 chr13 15205867 15206082 -86667087 - L1ME3A LINE L1 -1176 4953 4727 2639 147 153 6 chr13 15206256 15206772 -86666397 - MER7C DNA MER2_type -1 601 10 2152 128 0 0 chr13 15206826 15207122 -86666047 - AluSq SINE Alu -17 296 1 398 258 161 51 chr13 15207268 15207405 -86665764 - L1ME3A LINE L1 -1909 4220 4099 2389 54 10 10 chr13 15207405 15207699 -86665470 + AluY SINE Alu 7 300 -11 398 258 161 51 chr13 15207699 15207953 -86665216 - L1ME3A LINE L1 -2030 4099 3786 359 131 172 30 chr13 15207994 15208093 -86665076 - MER3 DNA MER1_type -96 113 1 1919 154 0 10 chr13 15208205 15208498 -86664671 + AluJb SINE Alu 1 290 -22 374 286 137 24 chr13 15208505 15208747 -86664422 - L1ME3A LINE L1 -2515 3614 3401 810 215 98 5 chr13 15208747 15208952 -86664217 + MER58A DNA MER1_type 1 224 0 374 286 137 24 chr13 15208952 15209346 -86663823 - L1ME3A LINE L1 -2728 3401 2906 353 290 101 22 chr13 15209353 15209849 -86663320 - L1ME3A LINE L1 -3279 2850 2316 914 193 69 112 chr13 15209869 15210369 -86662800 - LTR8A LTR ERV1 -15 707 102 776 208 72 44 chr13 15210412 15210662 -86662507 - LTR8 LTR ERV1 -434 257 1 1600 107 0 0 chr13 15210832 15211047 -86662122 - AluSc SINE Alu -8 301 87 21 0 0 0 chr13 15211054 15211075 -86662094 + AT_rich Low_complexity Low_complexity 1 21 0 237 261 159 52 chr13 15211307 15211767 -86661402 - L1ME3A LINE L1 -5011 1108 600 243 88 0 0 chr13 15212122 15212156 -86661013 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1009 185 177 12 chr13 15212156 15212399 -86660770 - AluJb SINE Alu -18 284 2 2006 141 0 7 chr13 15212859 15213163 -86660006 - AluSx SINE Alu -10 302 1 1634 231 94 36 chr13 15213737 15214287 -86658882 - MER119 DNA MER1_type -1 582 1 209 229 16 33 chr13 15214871 15214932 -86658237 + GA-rich Low_complexity Low_complexity 1 60 0 2020 119 31 3 chr13 15215298 15215591 -86657578 + AluSx SINE Alu 1 301 -11 369 261 90 24 chr13 15215801 15216075 -86657094 - L1P4 LINE L1 -302 5819 5533 313 274 10 49 chr13 15216804 15216906 -86656263 + MIR SINE MIR 57 154 -108 1053 144 8 81 chr13 15217324 15217560 -86655609 + MER20B DNA MER1_type 1 219 0 801 263 106 32 chr13 15217678 15217813 -86655356 + L2 LINE L2 2950 3074 -239 2097 99 13 33 chr13 15217813 15218116 -86655053 - AluSx SINE Alu -15 297 1 801 263 106 32 chr13 15218116 15218127 -86655042 + L2 LINE L2 3074 3083 -230 1595 166 83 3 chr13 15218127 15218416 -86654753 - AluJb SINE Alu 0 312 1 801 263 106 32 chr13 15218416 15218607 -86654562 + L2 LINE L2 3083 3313 0 273 322 0 22 chr13 15218872 15218962 -86654207 + MER5A DNA MER1_type 36 123 -66 723 241 27 0 chr13 15218987 15219174 -86653995 + L1MB4 LINE L1 4887 5078 -1068 2402 166 96 9 chr13 15219178 15219845 -86653324 + L1MB4 LINE L1 5109 5831 -349 1365 76 6 0 chr13 15219845 15220017 -86653152 + AluSc SINE Alu 1 173 -136 1358 160 109 24 chr13 15220017 15220355 -86652814 + L1MB4 LINE L1 5814 6180 0 362 171 13 0 chr13 15220367 15220443 -86652726 + L1MB8 LINE L1 6102 6178 0 1396 181 81 54 chr13 15221393 15221607 -86651562 - L1MB7 LINE L1 -347 5837 5630 2188 104 3 3 chr13 15221607 15221904 -86651265 - AluSg SINE Alu -13 297 1 1396 181 81 54 chr13 15221904 15222025 -86651144 - L1MB7 LINE L1 -554 5630 5514 1506 131 30 128 chr13 15222025 15222361 -86650808 - AluJo SINE Alu -9 303 1 2378 93 0 0 chr13 15222365 15222665 -86650504 - AluSc SINE Alu -9 300 1 1396 181 81 54 chr13 15222665 15222693 -86650476 - L1MB7 LINE L1 -672 5512 5458 2442 56 0 7 chr13 15222789 15223092 -86650077 - AluY SINE Alu -10 301 1 419 237 98 6 chr13 15223130 15223311 -86649858 + MIR SINE MIR 21 216 -46 380 242 153 32 chr13 15223534 15223658 -86649511 + MIR SINE MIR 16 154 -108 837 301 194 44 chr13 15223675 15224890 -86648279 - L2 LINE L2 -16 3297 1891 1138 281 89 37 chr13 15224890 15225398 -86647771 - MLT1H LTR MaLR -4 545 12 466 266 42 151 chr13 15225401 15226045 -86647124 - L2 LINE L2 -1415 1899 1326 2102 141 0 0 chr13 15227266 15227570 -86645599 - AluSx SINE Alu -8 304 1 2538 53 0 10 chr13 15227796 15228099 -86645070 + AluY SINE Alu 1 300 -11 212 259 0 17 chr13 15228334 15228392 -86644777 + CT-rich Low_complexity Low_complexity 2 58 0 301 255 92 41 chr13 15228941 15229039 -86644130 + L2 LINE L2 3167 3269 -3 343 314 99 84 chr13 15229267 15229611 -86643558 - L2 LINE L2 -1 3271 2923 295 288 24 16 chr13 15230321 15230461 -86642708 - L1M4 LINE L1 -1062 5084 4944 2192 149 12 0 chr13 15230549 15230892 -86642277 + MER7A DNA MER2_type 1 345 -1 905 241 100 17 chr13 15230901 15231191 -86641978 - L1M4 LINE L1 -1812 4334 4021 434 171 0 40 chr13 15231225 15231301 -86641868 + Tigger5 DNA MER2_type 7 79 -2244 491 158 0 12 chr13 15231321 15231403 -86641766 + Tigger5 DNA MER2_type 2242 2322 -1 848 250 125 95 chr13 15231430 15232033 -86641136 - L1M4 LINE L1 -1856 4290 3650 1190 227 106 0 chr13 15232033 15232306 -86640863 - AluJo SINE Alu 0 302 1 848 250 125 95 chr13 15232306 15232597 -86640572 - L1M4 LINE L1 -2496 3650 3369 1207 222 100 61 chr13 15232729 15232996 -86640173 - L1ME3A LINE L1 0 6170 5915 264 40 60 0 chr13 15232996 15233046 -86640123 + (TG)n Simple_repeat Simple_repeat 2 54 0 1610 204 4 7 chr13 15233046 15233326 -86639843 - AluJb SINE Alu -29 283 5 1207 222 100 61 chr13 15233326 15233585 -86639584 - L1ME3A LINE L1 -254 5916 5622 226 116 47 0 chr13 15233633 15233676 -86639493 - L1MEd LINE L1 -3834 2810 2766 211 267 0 0 chr13 15233770 15233815 -86639354 - MIR SINE MIR -21 241 197 265 360 15 5 chr13 15233827 15234024 -86639145 - L1MEd LINE L1 -4722 2103 1905 23 0 0 0 chr13 15234051 15234074 -86639095 + AT_rich Low_complexity Low_complexity 1 23 0 316 298 65 26 chr13 15234241 15234320 -86638849 - L1MEd LINE L1 -5103 1439 1365 1406 176 74 35 chr13 15234320 15234604 -86638565 - AluJb SINE Alu -17 295 1 316 298 65 26 chr13 15234604 15234772 -86638397 - L1MEd LINE L1 -5177 1365 1225 299 316 147 26 chr13 15234815 15235081 -86638088 - L1MEd LINE L1 -5345 1289 992 21 36 0 0 chr13 15235473 15235501 -86637668 + AT_rich Low_complexity Low_complexity 1 28 0 1402 161 16 79 chr13 15239479 15239796 -86633373 + AluSx SINE Alu 1 297 -15 1825 127 56 0 chr13 15240044 15240328 -86632841 + AluSx SINE Alu 3 302 -10 242 288 0 30 chr13 15240446 15240512 -86632657 - L2 LINE L2 -50 3222 3159 5664 104 25 34 chr13 15241551 15242398 -86630771 - L1PA15 LINE L1 -4 6161 5308 2060 122 20 0 chr13 15242398 15242694 -86630475 - AluSg SINE Alu -8 302 1 5664 104 25 34 chr13 15242694 15243615 -86629554 - L1PA15 LINE L1 -857 5308 4397 2017 147 3 7 chr13 15243619 15243919 -86629250 - AluSx SINE Alu -13 299 1 2947 218 25 1 chr13 15243993 15244676 -86628493 - L1PA15-16 LINE L1 -3388 3461 2763 23 33 0 0 chr13 15246059 15246089 -86627080 + AT_rich Low_complexity Low_complexity 1 30 0 386 273 82 31 chr13 15246892 15247086 -86626083 + L1MEd LINE L1 606 809 -5310 26 0 0 0 chr13 15248005 15248031 -86625138 + AT_rich Low_complexity Low_complexity 1 26 0 2284 120 0 7 chr13 15248125 15248434 -86624735 + AluSx SINE Alu 1 307 -5 344 318 72 63 chr13 15248563 15248881 -86624288 + HAL1 LINE L1 1214 1534 -973 439 271 165 4 chr13 15249131 15249367 -86623802 + L1MEd LINE L1 2242 2515 -3614 609 281 151 87 chr13 15249711 15250672 -86622497 + L1MEd LINE L1 3042 4063 -2066 26 30 0 0 chr13 15250715 15250748 -86622421 + AT_rich Low_complexity Low_complexity 1 33 0 2556 128 21 19 chr13 15250751 15251173 -86621996 - L1PB3 LINE L1 -7 6147 5725 527 283 84 58 chr13 15251420 15251605 -86621564 + L1MEd LINE L1 4394 4573 -1556 1732 172 44 0 chr13 15251605 15251902 -86621267 + AluJb SINE Alu 1 310 -2 527 283 84 58 chr13 15251902 15252333 -86620836 + L1MEd LINE L1 4573 4992 -1137 2507 71 7 0 chr13 15252333 15252642 -86620527 + AluY SINE Alu 1 311 0 527 283 84 58 chr13 15252642 15252750 -86620419 + L1MEd LINE L1 4992 5096 -1033 2833 148 41 36 chr13 15252750 15253100 -86620069 + L1MA4 LINE L1 5710 6066 -234 2050 121 10 3 chr13 15253100 15253398 -86619771 - AluSx SINE Alu -8 304 5 2833 148 41 36 chr13 15253398 15253635 -86619534 + L1MA4 LINE L1 6066 6300 0 527 283 84 58 chr13 15253635 15253696 -86619473 + L1MEd LINE L1 5096 5201 -928 335 181 236 0 chr13 15253760 15253832 -86619337 + Tigger5 DNA MER2_type 2234 2322 -1 21 0 0 0 chr13 15253869 15253890 -86619279 + AT_rich Low_complexity Low_complexity 1 21 0 216 278 133 11 chr13 15255551 15255641 -86617528 + MER91C DNA MER1_type 39 139 -1 242 195 117 13 chr13 15256471 15256548 -86616621 + L1MC5 LINE L1 7833 7917 -44 1590 193 0 37 chr13 15257255 15257551 -86615618 - AluJb SINE Alu -27 285 1 353 272 53 35 chr13 15258160 15258274 -86614895 - L2 LINE L2 -1 3271 3156 262 314 0 12 chr13 15259395 15259481 -86613688 + (TA)n Simple_repeat Simple_repeat 1 85 0 2170 173 48 35 chr13 15259481 15259937 -86613232 - MLT2B2 LTR ERVL -50 465 4 229 261 145 0 chr13 15260522 15260591 -86612578 + L2 LINE L2 3179 3257 -15 1797 151 13 20 chr13 15260838 15261136 -86612033 - AluSx SINE Alu -16 296 1 188 324 14 0 chr13 15261735 15261806 -86611363 - L2 LINE L2 -313 2959 2888 256 299 16 136 chr13 15261841 15262025 -86611144 + MER5B DNA MER1_type 10 171 -7 2478 68 0 3 chr13 15263673 15263980 -86609189 + AluY SINE Alu 1 306 -5 30 83 0 0 chr13 15264293 15264365 -86608804 + AT_rich Low_complexity Low_complexity 1 72 0 833 238 76 39 chr13 15264907 15265264 -86607905 + L1MC5 LINE L1 7166 7535 -426 505 151 0 43 chr13 15266104 15266197 -86606972 - FLAM_C SINE Alu -8 135 47 1738 108 13 0 chr13 15266423 15266654 -86606515 + AluSp SINE Alu 44 277 -36 195 114 0 0 chr13 15266663 15266698 -86606471 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 226 263 15 86 chr13 15266698 15266896 -86606273 - HAL1 LINE L1 -566 1941 1758 303 49 0 0 chr13 15266903 15266944 -86606225 + (TG)n Simple_repeat Simple_repeat 2 42 0 685 237 43 61 chr13 15266964 15267243 -86605926 - HAL1 LINE L1 -1446 1061 788 1085 258 171 36 chr13 15267248 15267803 -86605366 - HAL1 LINE L1 -1637 870 241 294 195 0 6 chr13 15267812 15267875 -86605294 - FLAM SINE Alu -6 127 76 2229 95 0 10 chr13 15268364 15268660 -86604509 + AluSx SINE Alu 1 293 -19 894 186 54 14 chr13 15268811 15269032 -86604137 - MER20B DNA MER1_type -1 782 553 1762 221 93 41 chr13 15269279 15269840 -86603329 - L1ME2 LINE L1 -121 6043 5454 2035 113 28 7 chr13 15270041 15270332 -86602837 - AluSx SINE Alu -15 297 1 2186 122 3 0 chr13 15270339 15270643 -86602526 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 15270845 15270874 -86602295 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 15271104 15271148 -86602021 + AT_rich Low_complexity Low_complexity 1 44 0 195 271 224 28 chr13 15271567 15271674 -86601495 + L2 LINE L2 3138 3265 -7 2229 103 0 3 chr13 15271855 15272145 -86601024 + AluY SINE Alu 1 289 -22 1728 167 21 0 chr13 15272681 15272963 -86600206 - AluJo SINE Alu -24 288 1 1739 154 28 18 chr13 15273525 15273810 -86599359 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 15274703 15274724 -86598445 + AT_rich Low_complexity Low_complexity 1 21 0 598 203 42 0 chr13 15276470 15276588 -86596581 + MER58B DNA MER1_type 216 338 -3 398 296 59 7 chr13 15276601 15276736 -86596433 - MIR SINE MIR -112 150 9 375 216 207 0 chr13 15276785 15276896 -86596273 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 15278196 15278232 -86594937 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 272 248 96 25 chr13 15278244 15278442 -86594727 - L1ME3A LINE L1 -220 5950 5739 726 267 11 11 chr13 15278566 15278742 -86594427 - MER5B DNA MER1_type -1 177 2 307 275 162 6 chr13 15278743 15278980 -86594189 - L1ME3A LINE L1 -515 5649 5367 243 0 0 0 chr13 15279439 15279466 -86593703 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 15280682 15280714 -86592455 + AT_rich Low_complexity Low_complexity 1 32 0 1202 193 106 23 chr13 15284747 15285011 -86588158 - AluJo SINE Alu -16 286 1 2029 75 8 8 chr13 15285776 15286043 -86587126 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 15286694 15286752 -86586417 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 15286954 15286991 -86586178 + AT_rich Low_complexity Low_complexity 1 37 0 757 274 102 6 chr13 15287101 15287444 -86585725 - L1ME4a LINE L1 -264 5857 5482 387 253 140 26 chr13 15287500 15287798 -86585371 - L1ME4a LINE L1 -738 5426 5086 380 300 40 25 chr13 15287836 15287998 -86585171 + MER5A DNA MER1_type 1 179 -10 386 329 75 32 chr13 15288015 15288295 -86584874 - L1ME4a LINE L1 -1125 5021 4730 207 186 0 0 chr13 15288620 15288663 -86584506 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr13 15288817 15288841 -86584328 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 15289151 15289179 -86583990 + AT_rich Low_complexity Low_complexity 1 28 0 601 287 111 9 chr13 15290486 15290702 -86582467 - MIR SINE MIR -21 241 4 2024 133 7 3 chr13 15291199 15291493 -86581676 - AluSx SINE Alu -17 295 1 263 86 0 0 chr13 15291509 15291544 -86581625 - U2 snRNA snRNA -153 35 1 316 293 96 30 chr13 15291857 15292024 -86581145 - L1ME4a LINE L1 -1726 4420 4243 1540 179 51 4 chr13 15292715 15292988 -86580181 - AluJo SINE Alu -24 288 3 2289 95 0 0 chr13 15293019 15293350 -86579819 + AluSx SINE Alu 1 331 0 21 0 0 0 chr13 15294445 15294466 -86578703 + AT_rich Low_complexity Low_complexity 1 21 0 271 171 43 29 chr13 15294540 15294610 -86578559 - L1ME4a LINE L1 -201 5920 5850 379 234 186 14 chr13 15294668 15294813 -86578356 + MIR SINE MIR 67 236 -26 2184 188 14 55 chr13 15294877 15295383 -86577786 + MER66B LTR ERV1 2 486 0 541 287 120 29 chr13 15295388 15295782 -86577387 - L1ME4a LINE L1 -357 5764 5321 256 212 66 88 chr13 15296262 15296399 -86576770 - L1 LINE L1 -1107 5039 4906 22 35 0 0 chr13 15296427 15296456 -86576713 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr13 15296703 15296747 -86576422 + AT_rich Low_complexity Low_complexity 1 44 0 2093 108 26 23 chr13 15298008 15298313 -86574856 - AluSx SINE Alu -6 306 1 2025 130 0 0 chr13 15298404 15298681 -86574488 - AluSx SINE Alu -35 277 1 229 246 16 16 chr13 15298773 15298834 -86574335 + (TATG)n Simple_repeat Simple_repeat 2 62 0 602 269 64 6 chr13 15298890 15299061 -86574108 - MIR SINE MIR -57 205 25 25 0 0 0 chr13 15299455 15299480 -86573689 + AT_rich Low_complexity Low_complexity 1 25 0 7951 90 35 26 chr13 15300913 15302138 -86571031 - MER11B LTR ERVK 0 1236 1 366 314 37 16 chr13 15302156 15302347 -86570822 + HAL1b LINE L1 395 589 -759 7015 64 13 53 chr13 15302648 15304730 -86568439 + SVA Other Other 1 1385 -1 23 0 0 0 chr13 15304736 15304759 -86568410 + AT_rich Low_complexity Low_complexity 1 23 0 339 293 94 45 chr13 15304983 15305179 -86567990 + L1ME LINE L1 3741 3926 -2220 2470 58 0 0 chr13 15305179 15305473 -86567696 - AluY SINE Alu -17 294 1 339 293 94 45 chr13 15305473 15305720 -86567449 + L1ME LINE L1 3926 4194 -1952 201 74 0 0 chr13 15306192 15306219 -86566950 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1775 180 0 0 chr13 15306222 15306506 -86566663 - AluJb SINE Alu -28 284 1 188 333 100 22 chr13 15306595 15306685 -86566484 - L2 LINE L2 -35 3237 3141 1676 164 3 33 chr13 15306816 15307121 -86566048 - AluSx SINE Alu -16 296 1 350 233 98 30 chr13 15307328 15307461 -86565708 + L1ME LINE L1 5536 5677 -444 366 263 12 0 chr13 15307516 15307596 -86565573 + Tigger3(Golem) DNA MER2_type 2 82 -2947 193 0 94 0 chr13 15307622 15307654 -86565515 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 8482 49 5 222 chr13 15307659 15309402 -86563767 - SVA Other Other -1 1385 21 1684 137 59 0 chr13 15309406 15309676 -86563493 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 286 287 58 0 chr13 15309960 15310047 -86563122 - LTR50 LTR ERVL -703 92 1 337 178 117 84 chr13 15310254 15310446 -86562723 + HAL1b LINE L1 1163 6120 -1 485 247 56 28 chr13 15310903 15311081 -86562088 - L1MC5 LINE L1 -50 7980 7798 1250 170 32 36 chr13 15311140 15311393 -86561776 - AluJo SINE Alu -12 300 49 2349 246 127 51 chr13 15311401 15311595 -86561574 - L1MC5 LINE L1 -385 7645 7467 1855 149 16 3 chr13 15311595 15311903 -86561266 - AluJb SINE Alu 0 312 1 2349 246 127 51 chr13 15311903 15313622 -86559547 - L1MC5 LINE L1 -563 7467 5550 445 259 18 24 chr13 15313619 15313789 -86559380 - L1MC5 LINE L1 -3742 2473 2305 * 754 200 39 19 chr13 15313789 15313944 -86559225 + FRAM SINE Alu 1 155 -21 29 0 0 0 chr13 15313945 15313974 -86559195 + AT_rich Low_complexity Low_complexity 1 29 0 461 158 110 16 chr13 15314028 15314155 -86559014 - L1MC5 LINE L1 -4078 2318 2180 2019 251 85 50 chr13 15314211 15315356 -86557813 - L1MC5 LINE L1 -4370 2026 842 1121 265 78 52 chr13 15315356 15315892 -86557277 - L1MC5 LINE L1 -5825 571 22 9634 87 5 4 chr13 15315970 15318096 -86555073 - L1PA8 LINE L1 -18 6154 4027 348 278 126 63 chr13 15318386 15318609 -86554560 + L2 LINE L2 2962 3198 -115 24 0 0 0 chr13 15318944 15318968 -86554201 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 15319717 15319741 -86553428 + AT_rich Low_complexity Low_complexity 1 24 0 264 30 0 0 chr13 15321009 15321042 -86552127 + (CA)n Simple_repeat Simple_repeat 2 34 0 1998 128 3 0 chr13 15321046 15321334 -86551835 - AluSx SINE Alu -7 305 17 538 279 134 23 chr13 15321476 15321879 -86551290 - MLT1J2 LTR MaLR -2 444 1 24 91 0 0 chr13 15322049 15322115 -86551054 + AT_rich Low_complexity Low_complexity 1 66 0 242 189 42 42 chr13 15322890 15322985 -86550184 - L1MDa LINE L1 -3998 2217 2123 329 356 37 21 chr13 15322994 15323185 -86549984 - L1MDa LINE L1 -4273 2123 1930 603 322 57 13 chr13 15323271 15323749 -86549420 - L1MDa LINE L1 -4640 1756 1258 628 325 43 9 chr13 15324959 15325304 -86547865 - L1ME3A LINE L1 -219 5951 5595 536 233 42 130 chr13 15325646 15325699 -86547470 - L1 LINE L1 -942 5204 5148 2074 114 0 7 chr13 15325699 15325998 -86547171 - AluSx SINE Alu -15 297 1 536 233 42 130 chr13 15325998 15326275 -86546894 - L1 LINE L1 -998 5148 4903 339 269 171 17 chr13 15327167 15327401 -86545768 - HAL1 LINE L1 -910 1597 1328 24 32 0 0 chr13 15328501 15328532 -86544637 + AT_rich Low_complexity Low_complexity 1 31 0 387 0 0 0 chr13 15328724 15328767 -86544402 + (TG)n Simple_repeat Simple_repeat 2 44 0 722 233 33 74 chr13 15330216 15330486 -86542683 + MIR SINE MIR 3 261 -1 30 27 0 0 chr13 15330988 15331025 -86542144 + AT_rich Low_complexity Low_complexity 1 37 0 760 298 4 26 chr13 15331082 15331310 -86541859 + MIR SINE MIR 12 234 -28 1781 164 42 8 chr13 15332539 15332892 -86540277 - MLT1A1 LTR MaLR 0 365 1 3185 174 24 35 chr13 15333312 15333972 -86539197 + MER82 DNA MER2_type 1 653 0 904 80 0 0 chr13 15334517 15334630 -86538539 + AluSg/x SINE Alu 186 298 -11 942 107 14 7 chr13 15336234 15336374 -86536795 - AluSq/x SINE Alu -172 141 1 293 195 0 6 chr13 15336863 15336926 -86536243 + FLAM SINE Alu 76 127 -6 1084 259 171 36 chr13 15336935 15337490 -86535679 + HAL1 LINE L1 241 870 -1637 694 237 43 61 chr13 15337495 15337774 -86535395 + HAL1 LINE L1 788 1061 -1446 267 54 0 0 chr13 15337794 15337831 -86535338 + (CA)n Simple_repeat Simple_repeat 2 38 0 226 263 15 86 chr13 15337838 15338036 -86535133 + HAL1 LINE L1 1758 1941 -566 261 57 0 0 chr13 15338036 15338071 -86535098 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1714 108 13 0 chr13 15338080 15338311 -86534858 - AluSp SINE Alu -36 277 44 502 151 0 43 chr13 15338537 15338630 -86534539 + FLAM_C SINE Alu 47 135 -8 858 238 76 39 chr13 15339470 15339827 -86533342 - L1MC5 LINE L1 -426 7535 7166 30 83 0 0 chr13 15340369 15340441 -86532728 + AT_rich Low_complexity Low_complexity 1 72 0 2424 69 0 3 chr13 15340754 15341059 -86532110 - AluY SINE Alu -7 304 1 257 299 16 136 chr13 15342707 15342891 -86530278 - MER5B DNA MER1_type -7 171 10 185 244 35 70 chr13 15342926 15343012 -86530157 + L2 LINE L2 2888 2959 -313 1815 151 10 20 chr13 15343596 15343895 -86529274 + AluSx SINE Alu 1 296 -16 229 261 145 0 chr13 15344142 15344211 -86528958 - L2 LINE L2 -15 3257 3179 2149 178 47 34 chr13 15344796 15345263 -86527906 + MLT2B2 LTR ERVL 4 476 -39 243 301 0 14 chr13 15345265 15345338 -86527831 + (TA)n Simple_repeat Simple_repeat 1 72 0 354 272 53 35 chr13 15346460 15346574 -86526595 + L2 LINE L2 3156 3271 -1 1563 193 0 37 chr13 15347183 15347479 -86525690 + AluJb SINE Alu 1 285 -27 275 241 89 27 chr13 15348186 15348298 -86524871 - L1MC5 LINE L1 -44 7917 7799 215 278 133 11 chr13 15349093 15349183 -86523986 - MER91C DNA MER1_type -1 139 39 21 0 0 0 chr13 15350844 15350865 -86522304 + AT_rich Low_complexity Low_complexity 1 21 0 339 181 236 0 chr13 15350902 15350974 -86522195 - Tigger5 DNA MER2_type -1 2322 2234 1260 161 22 0 chr13 15351099 15351329 -86521840 - L1MA4 LINE L1 0 6300 6066 2024 112 11 3 chr13 15351336 15351623 -86521546 + AluSx SINE Alu 5 293 -19 911 186 54 14 chr13 15351774 15351995 -86521174 - MER20B DNA MER1_type -1 782 553 1789 221 93 41 chr13 15352242 15352803 -86520366 - L1ME2 LINE L1 -121 6043 5454 2001 113 28 7 chr13 15353004 15353295 -86519874 - AluSx SINE Alu -15 297 1 2154 122 3 0 chr13 15353302 15353606 -86519563 - AluSp SINE Alu -8 305 1 22 35 0 0 chr13 15353808 15353837 -86519332 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 15354067 15354111 -86519058 + AT_rich Low_complexity Low_complexity 1 44 0 197 271 224 28 chr13 15354530 15354637 -86518532 + L2 LINE L2 3138 3265 -7 2195 103 0 3 chr13 15354818 15355108 -86518061 + AluY SINE Alu 1 289 -22 1698 167 21 0 chr13 15355644 15355926 -86517243 - AluJo SINE Alu -24 288 1 1712 154 28 18 chr13 15356488 15356773 -86516396 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 15357667 15357688 -86515481 + AT_rich Low_complexity Low_complexity 1 21 0 600 203 42 0 chr13 15359434 15359552 -86513617 + MER58B DNA MER1_type 216 338 -3 408 294 59 7 chr13 15359564 15359700 -86513469 - MIR SINE MIR -111 151 9 379 216 207 0 chr13 15359749 15359860 -86513309 + MER104 DNA Tc2 47 180 0 202 222 0 0 chr13 15361161 15361197 -86511972 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 299 273 86 15 chr13 15361209 15361407 -86511762 - L1ME3A LINE L1 -220 5950 5739 727 267 11 11 chr13 15361531 15361707 -86511462 - MER5B DNA MER1_type -1 177 2 324 269 162 6 chr13 15361708 15361945 -86511224 - L1ME3A LINE L1 -515 5649 5367 243 0 0 0 chr13 15362403 15362430 -86510739 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr13 15363646 15363678 -86509491 + AT_rich Low_complexity Low_complexity 1 32 0 1178 193 106 23 chr13 15367710 15367974 -86505195 - AluJo SINE Alu -16 286 1 1999 75 8 8 chr13 15368738 15369005 -86504164 - AluSg1 SINE Alu -9 300 34 30 69 0 0 chr13 15369656 15369714 -86503455 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 15369916 15369953 -86503216 + AT_rich Low_complexity Low_complexity 1 37 0 794 274 102 6 chr13 15370063 15370406 -86502763 - L1ME4a LINE L1 -264 5857 5482 393 253 140 26 chr13 15370462 15370760 -86502409 - L1ME4a LINE L1 -738 5426 5086 386 300 40 25 chr13 15370798 15370960 -86502209 + MER5A DNA MER1_type 1 179 -10 390 329 75 32 chr13 15370977 15371257 -86501912 - L1ME4a LINE L1 -1125 5021 4730 210 171 0 0 chr13 15371582 15371623 -86501546 + (CA)n Simple_repeat Simple_repeat 1 41 0 24 0 0 0 chr13 15371777 15371801 -86501368 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 15372111 15372139 -86501030 + AT_rich Low_complexity Low_complexity 1 28 0 617 282 111 9 chr13 15373446 15373662 -86499507 - MIR SINE MIR -21 241 4 1995 133 7 3 chr13 15374159 15374453 -86498716 - AluSx SINE Alu -17 295 1 262 86 0 0 chr13 15374469 15374504 -86498665 - U2 snRNA snRNA -153 35 1 317 299 96 30 chr13 15374817 15374984 -86498185 - L1ME4a LINE L1 -1726 4420 4243 1516 179 51 4 chr13 15375675 15375948 -86497221 - AluJo SINE Alu -24 288 3 2255 95 0 0 chr13 15375979 15376314 -86496855 + AluSx SINE Alu 1 335 0 23 68 0 0 chr13 15427418 15427462 -86445707 + AT_rich Low_complexity Low_complexity 1 44 0 292 341 56 8 chr13 15427484 15427610 -86445559 - L2 LINE L2 -4 3268 3137 2180 100 0 0 chr13 15428515 15428796 -86444373 - AluSx SINE Alu -31 281 1 351 0 0 0 chr13 15428802 15428841 -86444328 + (TG)n Simple_repeat Simple_repeat 2 40 0 5635 115 40 7 chr13 15428846 15429813 -86443356 - L1PA15 LINE L1 -20 6145 5151 1487 117 23 39 chr13 15430113 15430370 -86442799 + Tigger7 DNA MER2_type 2239 2491 0 288 361 107 50 chr13 15430370 15430708 -86442461 - L2 LINE L2 -6 3266 2910 415 195 11 17 chr13 15430779 15430887 -86442282 - AluJb SINE Alu -112 190 122 335 320 157 28 chr13 15431959 15432284 -86440885 + L2 LINE L2 2424 2790 -524 576 306 73 7 chr13 15432556 15432775 -86440394 + MIR SINE MIR 33 262 0 276 313 12 12 chr13 15432838 15432918 -86440251 + L2 LINE L2 3220 3299 -14 243 179 0 0 chr13 15433724 15433791 -86439378 + T-rich Low_complexity Low_complexity 1 67 0 2054 108 0 26 chr13 15434793 15435098 -86438071 + AluSx SINE Alu 1 297 -15 212 184 0 0 chr13 15435999 15436037 -86437132 + T-rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 15437089 15437111 -86436058 + AT_rich Low_complexity Low_complexity 1 22 0 2364 49 18 0 chr13 15437921 15438207 -86434962 - AluY SINE Alu -20 291 1 302 283 117 7 chr13 15438923 15439068 -86434101 + L1MC4a LINE L1 5735 5895 -1913 4551 118 34 10 chr13 15439297 15440084 -86433085 - L1PA16 LINE L1 -2 6164 5321 1305 270 73 74 chr13 15441072 15441392 -86431777 - L2 LINE L2 -423 2891 2572 576 168 0 18 chr13 15441392 15441505 -86431664 - HY1 scRNA scRNA -1 111 1 1305 270 73 74 chr13 15441505 15441900 -86431269 - L2 LINE L2 -742 2572 2177 476 289 34 44 chr13 15441915 15442119 -86431050 - L2 LINE L2 -20 3293 3092 24 53 0 0 chr13 15442217 15442255 -86430914 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 15442564 15442593 -86430576 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 15442641 15442662 -86430507 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 238 167 17 17 chr13 15442804 15442864 -86430305 + T-rich Low_complexity Low_complexity 5 64 0 1825 143 7 0 chr13 15443547 15443850 -86429319 - AluSx SINE Alu 0 308 4 191 342 154 0 chr13 15444001 15444118 -86429051 - L3 LINE CR1 -11 1566 1432 21 57 0 0 chr13 15444618 15444653 -86428516 + AT_rich Low_complexity Low_complexity 1 35 0 349 310 29 56 chr13 15445023 15445364 -86427805 + L1M4 LINE L1 3809 4140 -2006 1638 140 20 98 chr13 15446040 15446446 -86426723 - MLT1A2 LTR MaLR 0 374 1 2222 106 13 0 chr13 15446469 15446772 -86426397 + AluSx SINE Alu 4 310 -2 2168 70 0 70 chr13 15446772 15447087 -86426082 + AluY SINE Alu 1 294 -17 250 292 162 26 chr13 15449919 15450073 -86423096 - L3b LINE CR1 -139 1444 1270 246 244 171 0 chr13 15450246 15450328 -86422841 - L2 LINE L2 -17 3296 3201 273 303 175 52 chr13 15450698 15450909 -86422260 - L2 LINE L2 -706 2608 2372 1985 136 3 7 chr13 15451759 15452054 -86421115 - AluSx SINE Alu -18 294 1 198 0 0 0 chr13 15453049 15453071 -86420098 + (T)n Simple_repeat Simple_repeat 1 22 0 222 118 0 0 chr13 15455291 15455325 -86417844 + (T)n Simple_repeat Simple_repeat 1 34 0 668 243 43 51 chr13 15456264 15456519 -86416650 - L2 LINE L2 0 3313 3061 968 275 96 8 chr13 15456526 15457112 -86416057 - L1MEc LINE L1 -3692 2848 2252 482 271 103 47 chr13 15457237 15457612 -86415557 - L1MEc LINE L1 -4812 1774 1333 1888 118 43 11 chr13 15457612 15457892 -86415277 + AluSx SINE Alu 7 295 -17 482 271 103 47 chr13 15457892 15457998 -86415171 - L1MEc LINE L1 -5253 1333 1234 1124 317 66 22 chr13 15458400 15459059 -86414110 - L2 LINE L2 -231 3082 2387 397 329 176 10 chr13 15459286 15459599 -86413570 + L2 LINE L2 2329 2693 -621 192 77 0 0 chr13 15459626 15459652 -86413517 + (CAG)n Simple_repeat Simple_repeat 1 26 0 1756 143 61 7 chr13 15460111 15460405 -86412764 - AluSx SINE Alu -2 310 1 309 340 174 14 chr13 15460717 15460999 -86412170 - L1 LINE L1 -2275 3871 3545 531 169 123 8 chr13 15461590 15461720 -86411449 + MER104 DNA Tc2 27 171 -9 454 281 113 65 chr13 15461726 15462036 -86411133 - L1ME2 LINE L1 -332 5832 5508 448 311 113 40 chr13 15462067 15462571 -86410598 - L1ME2 LINE L1 -1170 4976 4436 583 296 180 11 chr13 15462743 15463216 -86409953 - L1 LINE L1 -2690 3456 2904 238 321 121 5 chr13 15463535 15463750 -86409419 - L1 LINE L1 -3595 2551 2312 1528 122 18 0 chr13 15464887 15465109 -86408060 - AluSx SINE Alu -18 294 69 458 103 0 0 chr13 15465142 15465210 -86407959 - AluSx SINE Alu -245 68 1 325 293 24 10 chr13 15465406 15465521 -86407648 + MIR SINE MIR 43 161 -63 1679 197 0 13 chr13 15466223 15466533 -86406636 - AluJo SINE Alu -4 308 3 452 257 46 4 chr13 15467891 15468078 -86405091 + MIR SINE MIR 1 259 -3 1232 215 158 48 chr13 15468090 15468532 -86404637 - L2 LINE L2 -419 2895 2405 1923 129 11 7 chr13 15470009 15470296 -86402873 - AluJo SINE Alu -14 298 11 483 273 195 0 chr13 15470543 15470697 -86402472 + MER5A DNA MER1_type 6 189 0 637 291 94 5 chr13 15470845 15471048 -86402121 - MIR SINE MIR -14 248 28 203 289 0 0 chr13 15471374 15471419 -86401750 + L2 LINE L2 3261 3305 -8 1960 261 65 35 chr13 15471465 15471736 -86401433 + L2 LINE L2 2329 2590 -723 1827 138 48 75 chr13 15471736 15472135 -86401034 - MLT1B LTR MaLR -2 388 1 1960 261 65 35 chr13 15472135 15472812 -86400357 + L2 LINE L2 2590 3313 0 359 297 18 27 chr13 15472812 15472923 -86400246 - MIR SINE MIR -63 145 36 2230 110 0 10 chr13 15473037 15473338 -86399831 - AluSp SINE Alu -15 298 1 28 61 0 0 chr13 15473498 15473547 -86399622 + AT_rich Low_complexity Low_complexity 1 49 0 842 209 221 8 chr13 15473671 15473924 -86399245 - HAL1 LINE L1 -607 1900 1594 407 256 23 16 chr13 15476011 15476140 -86397029 + L1ME4a LINE L1 5725 5854 -267 332 197 15 0 chr13 15476148 15476214 -86396955 - MER116 DNA Mariner -12 68 2 400 173 90 0 chr13 15476309 15476401 -86396768 - MIR SINE MIR -49 213 115 2419 98 0 0 chr13 15476987 15477294 -86395875 + AluSx SINE Alu 1 307 -5 468 78 31 0 chr13 15477790 15477854 -86395315 + L1MB8 LINE L1 6104 6169 -9 223 197 0 30 chr13 15477855 15477921 -86395248 + (TA)n Simple_repeat Simple_repeat 1 64 0 748 309 70 25 chr13 15477994 15478522 -86394647 + L1ME2 LINE L1 4483 5034 -1112 2534 66 0 0 chr13 15478527 15478829 -86394340 + AluY SINE Alu 1 302 -9 1189 172 29 10 chr13 15478833 15479042 -86394127 + AluJb SINE Alu 86 298 -14 952 270 105 6 chr13 15479043 15479671 -86393498 + L1ME2 LINE L1 5036 5722 -448 344 204 59 22 chr13 15479683 15479800 -86393369 + L1ME2 LINE L1 5844 5962 -208 226 220 0 0 chr13 15479823 15479873 -86393296 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 3674 147 22 48 chr13 15480713 15481835 -86391334 + L1MA9 LINE L1 4676 5793 -519 242 202 47 8 chr13 15481838 15481967 -86391202 + (TA)n Simple_repeat Simple_repeat 1 134 0 3127 138 38 4 chr13 15481978 15482485 -86390684 + L1MA9 LINE L1 5789 6312 0 321 100 0 0 chr13 15482646 15482696 -86390473 + (TC)n Simple_repeat Simple_repeat 2 51 0 543 30 69 20 chr13 15483931 15484032 -86389137 + GA-rich Low_complexity Low_complexity 2 107 0 1703 74 0 5 chr13 15484235 15484450 -86388719 + AluY SINE Alu 83 296 -15 281 317 20 0 chr13 15484474 15484575 -86388594 + MIR3 SINE MIR 77 179 -29 495 222 152 33 chr13 15485364 15485601 -86387568 - MLT1L LTR MaLR -4 597 349 225 0 0 0 chr13 15485640 15485665 -86387504 + (TG)n Simple_repeat Simple_repeat 2 26 0 3774 183 105 15 chr13 15486767 15487099 -86386070 - L1MB7 LINE L1 -30 6154 5853 2255 194 48 34 chr13 15487099 15487494 -86385675 - MLT1D LTR MaLR 0 505 100 1312 196 45 31 chr13 15487494 15487780 -86385389 + AluJb SINE Alu 1 290 -22 2255 194 48 34 chr13 15487780 15487880 -86385289 - MLT1D LTR MaLR -405 100 3 3774 183 105 15 chr13 15487880 15488075 -86385094 - L1MB7 LINE L1 -331 5853 5677 195 42 0 0 chr13 15488075 15488099 -86385070 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1944 61 20 4 chr13 15488099 15488344 -86384825 - AluY SINE Alu -32 279 31 3774 183 105 15 chr13 15488344 15488789 -86384380 - L1MB7 LINE L1 -506 5678 5093 2220 114 10 3 chr13 15488880 15489187 -86383982 + AluSc SINE Alu 1 309 0 347 167 50 0 chr13 15491325 15491385 -86381784 - U6 snRNA snRNA -44 63 1 671 289 72 30 chr13 15491454 15491779 -86381390 + L2 LINE L2 2692 3022 -291 1267 167 83 34 chr13 15491779 15492043 -86381126 + AluJo SINE Alu 1 277 -35 222 62 0 0 chr13 15492048 15492080 -86381089 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4235 127 51 9 chr13 15492152 15492819 -86380350 - L1PA16 LINE L1 0 6166 5472 412 316 120 45 chr13 15493004 15493270 -86379899 + L1MA9 LINE L1 1493 1778 -5390 5394 179 43 46 chr13 15493354 15493845 -86379324 + L1MA9 LINE L1 3131 3622 -3711 1756 89 31 9 chr13 15493845 15494069 -86379100 + MER30 DNA MER1_type 2 230 0 5394 179 43 46 chr13 15494069 15495655 -86377514 + L1MA9 LINE L1 3622 5211 -2122 2192 82 67 0 chr13 15495655 15495937 -86377232 - AluSc SINE Alu -8 301 1 5394 179 43 46 chr13 15495937 15497201 -86375968 + L1MA9 LINE L1 5211 7214 -119 2009 118 14 0 chr13 15497201 15497519 -86375650 - AluSq SINE Alu 0 322 1 5394 179 43 46 chr13 15497519 15497639 -86375530 + L1MA9 LINE L1 7214 7333 0 183 42 0 0 chr13 15497920 15497944 -86375225 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 28 0 0 0 chr13 15498004 15498032 -86375137 + AT_rich Low_complexity Low_complexity 1 28 0 262 324 68 34 chr13 15498069 15498245 -86374924 - MIR SINE MIR -61 201 20 2187 111 3 10 chr13 15498310 15498608 -86374561 - AluSq SINE Alu -13 300 5 247 215 75 54 chr13 15498623 15498716 -86374453 - MARNA DNA Mariner -374 212 118 2214 92 3 30 chr13 15498814 15499117 -86374052 + AluSg SINE Alu 1 295 -15 241 0 0 0 chr13 15500115 15500142 -86373027 - AluY SINE Alu -258 42 16 676 198 64 43 chr13 15500484 15500671 -86372498 - MIR SINE MIR -2 260 70 207 146 0 0 chr13 15500762 15500803 -86372366 + (TG)n Simple_repeat Simple_repeat 1 41 0 287 194 167 111 chr13 15500809 15500917 -86372252 + L2 LINE L2 3156 3269 -3 413 209 22 14 chr13 15501588 15501727 -86371442 + (TATATG)n Simple_repeat Simple_repeat 1 140 0 * 765 189 0 0 chr13 15501693 15501862 -86371307 + (TG)n Simple_repeat Simple_repeat 2 170 0 632 210 115 0 chr13 15502515 15502672 -86370497 + MER104 DNA MER2_type 5 179 -1 196 289 75 44 chr13 15502768 15502927 -86370242 + L2 LINE L2 2890 3053 -219 453 112 11 56 chr13 15503211 15503300 -86369869 - L1MA10 LINE L1 0 6334 6250 1233 129 78 0 chr13 15503402 15503595 -86369574 - MER2 DNA MER2_type -135 210 3 3291 144 78 93 chr13 15503595 15504126 -86369043 + LTR8 LTR ERV1 1 521 -170 2185 132 0 0 chr13 15504126 15504436 -86368733 + AluSx SINE Alu 3 312 0 3291 144 78 93 chr13 15504436 15504605 -86368564 + LTR8 LTR ERV1 521 691 0 2986 146 111 49 chr13 15504605 15505174 -86367995 + HUERS-P1 LTR ERV1 1 533 -5730 321 68 0 0 chr13 15505174 15505218 -86367951 + (TG)n Simple_repeat Simple_repeat 1 44 0 2986 146 111 49 chr13 15505218 15505742 -86367427 + HUERS-P1 LTR ERV1 533 1246 -5017 1168 158 8 66 chr13 15505808 15506049 -86367120 - LTR8 LTR ERV1 -460 231 5 236 243 114 0 chr13 15506053 15506123 -86367046 - L1MA10 LINE L1 -88 6246 6169 2294 91 7 3 chr13 15506290 15506586 -86366583 + AluSq SINE Alu 1 297 -16 2034 103 156 16 chr13 15507111 15507617 -86365552 - MER4B LTR ERV1 0 694 1 530 267 188 19 chr13 15508622 15509008 -86364161 - L2 LINE L2 -49 3264 2770 2830 254 67 18 chr13 15509079 15510044 -86363125 - L1ME3A LINE L1 -5 6234 5219 5673 230 41 26 chr13 15510086 15510148 -86363021 - L1MEc LINE L1 -2489 3726 3666 2061 143 3 3 chr13 15510148 15510455 -86362714 - AluSx SINE Alu -1 311 5 5673 230 41 26 chr13 15510455 15512254 -86360915 - L1MEc LINE L1 -2549 3666 1881 745 141 16 0 chr13 15512407 15512535 -86360634 + HSMAR2 DNA Mariner 2 131 -1171 * 5941 139 21 12 chr13 15512532 15513483 -86359686 + HSMAR2 DNA Mariner 343 1302 0 350 310 121 41 chr13 15513659 15513949 -86359220 + L2 LINE L2 2059 2371 -943 1068 118 27 43 chr13 15514206 15514393 -86358776 + MER20 DNA MER1_type 36 219 0 444 245 7 53 chr13 15514406 15514504 -86358665 - MER69 DNA AcHobo -1 2525 2435 2196 117 0 3 chr13 15514504 15514813 -86358356 - AluSx SINE Alu -4 308 1 444 245 7 53 chr13 15514813 15514865 -86358304 - MER69 DNA AcHobo -91 2435 2382 * 2031 172 5 33 chr13 15514830 15515197 -86357972 - MLT1A1 LTR MaLR -8 357 1 363 169 0 0 chr13 15515369 15515428 -86357741 - MER69 DNA AcHobo -2467 59 1 279 224 0 0 chr13 15515536 15515612 -86357557 + (TG)n Simple_repeat Simple_repeat 2 77 0 1859 163 7 0 chr13 15517398 15517699 -86355470 - AluSx SINE Alu -9 303 1 540 208 24 24 chr13 15517807 15517967 -86355202 - MER5A DNA MER1_type -25 153 3 2000 133 3 23 chr13 15518533 15518871 -86354298 - AluSx SINE Alu 0 312 1 210 261 0 0 chr13 15519956 15520002 -86353167 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 1865 131 68 18 chr13 15520012 15520349 -86352820 + MER46B DNA MER2_type 2 230 -6 294 73 0 0 chr13 15520351 15520392 -86352777 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr13 15520427 15520451 -86352718 + (CA)n Simple_repeat Simple_repeat 1 24 0 1956 250 110 20 chr13 15520542 15521086 -86352083 + MLT1E LTR MaLR 1 593 0 2682 120 5 10 chr13 15521089 15521497 -86351672 - MER65A LTR ERV1 0 445 40 1250 87 46 25 chr13 15521511 15521707 -86351462 - MSTA LTR MaLR -228 200 1 240 154 0 0 chr13 15522000 15522039 -86351130 - MER65A LTR ERV1 -406 39 1 2111 129 7 7 chr13 15522407 15522717 -86350452 - AluSp SINE Alu -3 310 1 1732 162 7 33 chr13 15522926 15523228 -86349941 + AluJo SINE Alu 6 299 -13 626 324 45 11 chr13 15523329 15523646 -86349523 - L2 LINE L2 -26 3246 2919 2000 93 3 64 chr13 15525104 15525415 -86347754 - AluSc SINE Alu -17 292 1 2258 116 3 7 chr13 15525757 15526067 -86347102 - AluSx SINE Alu -3 309 1 2273 110 0 3 chr13 15526657 15526958 -86346211 + AluSx SINE Alu 1 300 -12 281 228 22 11 chr13 15528307 15528399 -86344770 + MIR3 SINE MIR 109 201 -7 258 361 93 39 chr13 15529468 15529778 -86343391 - L2 LINE L2 -1 3271 2945 1057 273 54 97 chr13 15529918 15530570 -86342599 + L1MEd LINE L1 8 631 -5488 386 285 153 8 chr13 15530911 15531153 -86342016 + L2 LINE L2 1763 2039 -1275 525 339 56 28 chr13 15531225 15531547 -86341622 + L2 LINE L2 2584 2914 -400 578 242 0 17 chr13 15531628 15531748 -86341421 - FLAM_A SINE Alu -15 127 10 423 228 25 21 chr13 15531786 15531944 -86341225 + L1MC4 LINE L1 7017 7256 -632 432 0 0 0 chr13 15531944 15531992 -86341177 + (TA)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr13 15532009 15532048 -86341121 + (CA)n Simple_repeat Simple_repeat 2 40 0 315 0 0 0 chr13 15532109 15532144 -86341025 + (CA)n Simple_repeat Simple_repeat 2 36 0 336 236 69 34 chr13 15532201 15532324 -86340845 + L1MC4 LINE L1 6507 6644 -1191 1007 236 57 74 chr13 15532334 15532808 -86340361 + L1MC4 LINE L1 7265 7730 -312 724 232 72 55 chr13 15532869 15533214 -86339955 + L1MC4 LINE L1 7691 8041 -1 * 1171 221 26 7 chr13 15533190 15533461 -86339708 + L1MC3 LINE L1 6456 6731 -1054 2473 174 118 32 chr13 15533885 15534454 -86338715 + L1MC3 LINE L1 6716 7333 -452 585 220 66 16 chr13 15534433 15534615 -86338554 + L1MC3 LINE L1 7593 7783 -2 * 416 327 90 18 chr13 15534653 15534876 -86338293 + L2 LINE L2 3031 3269 -3 246 333 36 0 chr13 15535349 15535433 -86337736 + L2 LINE L2 3200 3286 -27 1905 143 34 47 chr13 15535433 15535817 -86337352 + MLT1B LTR MaLR 1 379 -11 211 302 62 0 chr13 15535966 15536062 -86337107 - MER5A DNA MER1_type -79 110 9 22 56 0 0 chr13 15536802 15536838 -86336331 + AT_rich Low_complexity Low_complexity 1 36 0 283 254 45 45 chr13 15538459 15538569 -86334600 + LTR67 LTR ERVL 340 449 -108 184 323 102 62 chr13 15538629 15538951 -86334218 + L2 LINE L2 1658 1992 -1322 237 247 68 14 chr13 15539430 15539503 -86333666 - MLT1J LTR MaLR -340 171 95 438 308 85 48 chr13 15539573 15540054 -86333115 + L2 LINE L2 2010 2508 -806 1935 220 24 15 chr13 15540376 15540551 -86332618 + MLT1C LTR MaLR 1 173 -294 1648 185 50 0 chr13 15540551 15540848 -86332321 + AluJo SINE Alu 1 312 0 1935 220 24 15 chr13 15540848 15541135 -86332034 + MLT1C LTR MaLR 173 467 0 237 302 32 0 chr13 15541416 15541479 -86331690 + L2 LINE L2 3111 3175 -97 183 318 30 0 chr13 15542322 15542388 -86330781 + L2 LINE L2 2992 3059 -213 2542 119 16 0 chr13 15542683 15543052 -86330117 - THE1C LTR MaLR 0 375 1 240 243 87 78 chr13 15543098 15543304 -86329865 + Tigger1 DNA MER2_type 879 1086 -1332 21 0 0 0 chr13 15543597 15543618 -86329551 + AT_rich Low_complexity Low_complexity 1 21 0 3067 78 45 2 chr13 15543658 15544084 -86329085 + MLT2A1 LTR ERVL 1 444 0 576 283 12 23 chr13 15544240 15544413 -86328756 - MER5B DNA MER1_type -7 171 1 1386 196 0 51 chr13 15544446 15544757 -86328412 + AluJo SINE Alu 1 295 -17 420 313 42 10 chr13 15545421 15545613 -86327556 + MIR SINE MIR 11 208 -54 8250 12 0 0 chr13 15545645 15547176 -86325993 - L1HS LINE L1 -1 6154 4624 493 335 28 9 chr13 15547197 15547412 -86325757 + L1MEc LINE L1 503 721 -6104 1562 203 25 30 chr13 15547800 15548164 -86325005 + MLT1A1 LTR MaLR 1 362 -3 1120 287 50 36 chr13 15548234 15548921 -86324248 + L1MEc LINE L1 1024 1660 -4882 1878 260 96 28 chr13 15548953 15549849 -86323320 + L1MEc LINE L1 1994 2950 -3875 336 283 41 7 chr13 15549865 15550010 -86323159 + L1MEc LINE L1 3781 3930 -2714 2166 124 10 0 chr13 15550014 15550320 -86322849 + AluSg SINE Alu 1 309 -1 1493 278 117 34 chr13 15550353 15550997 -86322172 + HERV16 LTR ERVL 596 1292 -3704 5384 242 36 58 chr13 15551157 15551795 -86321374 + HERV16 LTR ERVL 1592 2242 -2754 2251 96 3 0 chr13 15551795 15552086 -86321083 + AluSq SINE Alu 1 292 -21 5384 242 36 58 chr13 15552086 15552218 -86320951 + HERV16 LTR ERVL 2242 2375 -2621 1727 157 34 14 chr13 15552218 15552511 -86320658 + AluJo SINE Alu 5 303 -9 5384 242 36 58 chr13 15552511 15553277 -86319892 + HERV16 LTR ERVL 2375 3096 -1900 534 291 11 6 chr13 15553365 15553540 -86319629 + HERV16 LTR ERVL 5175 5350 -304 704 282 13 21 chr13 15553641 15553973 -86319196 + LTR16A LTR ERVL 18 401 -49 882 300 101 39 chr13 15554103 15554640 -86318529 + HERV16 LTR ERVL 2048 2617 -2379 1542 181 19 4 chr13 15554714 15554979 -86318190 + MLT1A1 LTR MaLR 1 269 -96 402 322 34 7 chr13 15554979 15555125 -86318044 + HERV16 LTR ERVL 2778 2927 -2837 2973 317 63 34 chr13 15555159 15556700 -86316469 + HERV16 LTR ERVL 3224 4808 -956 1422 296 35 19 chr13 15556762 15557245 -86315924 + LTR16C LTR ERVL 1 491 0 702 280 19 56 chr13 15560016 15560160 -86313009 - MIR SINE MIR 0 262 131 2499 88 3 0 chr13 15560160 15560468 -86312701 + AluSg SINE Alu 1 309 -1 702 280 19 56 chr13 15560468 15560591 -86312578 - MIR SINE MIR -131 131 5 217 205 0 0 chr13 15560612 15560651 -86312518 + (CCCA)n Simple_repeat Simple_repeat 4 42 0 267 308 26 0 chr13 15561184 15561262 -86311907 + MIR3 SINE MIR 108 187 -21 529 234 111 18 chr13 15561822 15561993 -86311176 - MIR SINE MIR 0 262 76 1870 127 51 0 chr13 15562434 15562710 -86310459 + AluSx SINE Alu 1 290 -22 876 110 79 6 chr13 15563353 15563517 -86309652 - L1MA6 LINE L1 -4 6296 6121 188 282 214 0 chr13 15563517 15563620 -86309549 + L3 LINE CR1 524 648 -929 28 29 0 0 chr13 15563687 15563722 -86309447 + AT_rich Low_complexity Low_complexity 1 35 0 589 269 115 61 chr13 15563812 15564497 -86308672 - L1MC5 LINE L1 -78 7883 7247 1617 166 26 62 chr13 15565135 15565442 -86307727 - AluJo SINE Alu -16 296 1 1566 174 113 64 chr13 15565620 15566027 -86307142 - MER51A LTR ERV1 0 634 208 1406 238 111 2 chr13 15566990 15567439 -86305730 - MER114 LTR ERV 0 648 151 1002 145 0 0 chr13 15567458 15567610 -86305559 - AluSg/x SINE Alu -12 300 149 2169 314 35 10 chr13 15567712 15568701 -86304468 - ERVL LTR ERVL -1412 4352 3292 1206 299 41 19 chr13 15568720 15569223 -86303946 - ERVL LTR ERVL -1913 3083 2666 576 321 38 52 chr13 15569257 15569818 -86303351 - ERVL LTR ERVL -2639 2357 1969 570 263 47 6 chr13 15569833 15570004 -86303165 + L1MD2 LINE L1 6165 6342 -17 204 67 0 0 chr13 15570119 15570149 -86303020 + (CA)n Simple_repeat Simple_repeat 1 30 0 191 272 99 25 chr13 15572082 15572163 -86301006 - L2 LINE L2 -50 3222 3136 207 0 0 0 chr13 15572377 15572400 -86300769 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr13 15572497 15572526 -86300643 + AT_rich Low_complexity Low_complexity 1 29 0 293 365 48 8 chr13 15572554 15572680 -86300489 + L2 LINE L2 3138 3268 -4 1137 251 30 14 chr13 15572751 15573046 -86300123 - MLT1I LTR MaLR -3 406 107 574 182 0 15 chr13 15573278 15573410 -86299759 + CT-rich Low_complexity Low_complexity 2 131 0 1467 172 0 38 chr13 15573416 15573683 -86299486 - AluJo SINE Alu -55 257 1 222 150 0 0 chr13 15574016 15574056 -86299113 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 297 169 185 0 chr13 15574394 15574459 -86298710 + MLT1C LTR MaLR 6 82 -385 3410 136 23 59 chr13 15574460 15575109 -86298060 + L1MA7 LINE L1 5656 6281 -10 496 171 24 81 chr13 15575128 15575251 -86297918 + MLT1C LTR MaLR 67 182 -285 357 62 0 0 chr13 15575256 15575304 -86297865 + (CA)n Simple_repeat Simple_repeat 2 49 0 417 206 11 11 chr13 15575379 15575471 -86297698 + MLT1C LTR MaLR 376 467 0 1085 214 24 36 chr13 15576030 15576282 -86296887 - MIR SINE MIR -3 259 11 279 191 29 0 chr13 15576313 15576381 -86296788 + MER116 DNA Mariner 11 80 0 496 295 9 71 chr13 15576501 15576711 -86296458 + MIR SINE MIR 22 218 -44 2205 128 0 0 chr13 15577583 15577881 -86295288 + AluSx SINE Alu 1 298 -14 1887 201 66 43 chr13 15577985 15578473 -86294696 - MLT1D LTR MaLR -5 500 2 27 62 0 0 chr13 15578897 15578945 -86294224 + AT_rich Low_complexity Low_complexity 1 48 0 225 283 0 0 chr13 15579002 15579062 -86294107 - L1ME4a LINE L1 -88 6033 5974 551 284 148 42 chr13 15579108 15579342 -86293827 + L2 LINE L2 2841 3128 -185 1892 156 70 25 chr13 15579342 15579700 -86293469 - MLT1A2 LTR MaLR 0 374 1 551 284 148 42 chr13 15579700 15579824 -86293345 + L2 LINE L2 3128 3237 -76 303 307 10 10 chr13 15580187 15580288 -86292881 - MIR SINE MIR -74 134 34 1851 183 7 0 chr13 15581445 15581746 -86291423 - AluJo SINE Alu -9 303 1 718 275 160 47 chr13 15581753 15582196 -86290973 + MLT1H LTR MaLR 37 529 -20 336 237 59 44 chr13 15582204 15582339 -86290830 + MER65B LTR ERV1 1 137 -394 777 283 59 110 chr13 15582789 15583179 -86289990 + MLT1L LTR MaLR 110 584 -31 402 287 144 23 chr13 15583258 15583432 -86289737 + MIR3 SINE MIR 7 201 -7 2169 110 10 3 chr13 15584590 15584890 -86288279 - AluSq SINE Alu -11 302 1 240 111 0 0 chr13 15585426 15585471 -86287698 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 2096 115 3 3 chr13 15585722 15586032 -86287137 + AluSq SINE Alu 1 310 0 196 42 0 0 chr13 15586008 15586067 -86287102 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 1193 238 161 43 chr13 15587029 15587520 -86285649 - MLT1H LTR MaLR 0 549 1 446 290 129 24 chr13 15589774 15590022 -86283147 - L1ME4a LINE L1 -297 5824 5551 397 219 39 28 chr13 15590613 15590791 -86282378 + (TA)n Simple_repeat Simple_repeat 1 180 0 217 143 44 11 chr13 15590885 15590976 -86282193 + (TA)n Simple_repeat Simple_repeat 1 94 0 207 132 75 0 chr13 15590993 15591046 -86282123 + (TA)n Simple_repeat Simple_repeat 1 57 0 720 170 89 0 chr13 15591052 15591164 -86282005 - FLAM_C SINE Alu -20 123 2 470 316 38 14 chr13 15592337 15592546 -86280623 - MIR SINE MIR -29 233 20 904 218 40 44 chr13 15592725 15592806 -86280363 - MIR SINE MIR -24 238 158 2106 191 8 11 chr13 15592806 15593172 -86279997 - MLT1A1 LTR MaLR 0 365 1 904 218 40 44 chr13 15593172 15593315 -86279854 - MIR SINE MIR -104 158 15 405 273 245 43 chr13 15593332 15593610 -86279559 - L2 LINE L2 -902 2412 2079 183 256 179 36 chr13 15593616 15593811 -86279358 + L2 LINE L2 2465 2687 -627 199 365 56 0 chr13 15594534 15594660 -86278509 + L2 LINE L2 2910 3042 -230 1004 232 76 108 chr13 15594743 15595310 -86277859 + MER34B LTR ERV1 1 542 0 296 347 0 0 chr13 15595379 15595451 -86277718 + L2 LINE L2 3201 3272 0 1721 175 0 14 chr13 15598148 15598440 -86274729 - AluJb SINE Alu -24 288 1 386 300 14 21 chr13 15598546 15598686 -86274483 + MER117 DNA MER1_type 1 139 -58 632 246 97 64 chr13 15599569 15599899 -86273270 - MLT1J LTR MaLR -8 503 163 458 305 37 21 chr13 15600237 15600427 -86272742 + LTR16C LTR ERVL 299 491 0 270 292 50 33 chr13 15600430 15600550 -86272619 - MLT1J LTR MaLR -354 157 36 1654 178 3 32 chr13 15601141 15601455 -86271714 + AluJo SINE Alu 5 309 -3 865 232 217 62 chr13 15602065 15602517 -86270652 - MLT1L LTR MaLR -5 610 89 398 293 115 0 chr13 15602536 15602693 -86270476 + MIR SINE MIR 88 262 0 423 259 127 71 chr13 15603215 15603412 -86269757 + MIR SINE MIR 47 254 -8 9293 233 63 24 chr13 15603495 15604541 -86268628 - L1ME1 LINE L1 -6 6658 5654 1455 201 27 7 chr13 15604541 15604835 -86268334 + AluJo SINE Alu 1 300 -12 9293 233 63 24 chr13 15604835 15605545 -86267624 - L1ME1 LINE L1 -1010 5654 4973 1899 159 21 0 chr13 15605545 15605835 -86267334 - AluJb SINE Alu -16 296 1 9293 233 63 24 chr13 15605835 15606526 -86266643 - L1ME1 LINE L1 -1691 4973 4310 1608 253 46 36 chr13 15606526 15607024 -86266145 + MLT1D LTR MaLR 1 503 -2 9293 233 63 24 chr13 15607024 15608293 -86264876 - L1ME1 LINE L1 -2354 4310 2769 7628 49 7 3 chr13 15608293 15609965 -86263204 - L1PA7 LINE L1 -2 6152 4477 188 133 0 0 chr13 15610466 15610496 -86262673 - MIR SINE MIR -109 153 124 215 304 0 0 chr13 15611633 15611679 -86261490 + L2 LINE L2 3161 3206 -66 411 199 62 85 chr13 15612075 15612251 -86260918 - MER53 DNA DNA 0 189 18 189 333 0 0 chr13 15612262 15612316 -86260853 + MIR SINE MIR 93 146 -62 294 231 15 15 chr13 15613015 15613080 -86260089 - L2 LINE L2 -2 3270 3206 4309 79 70 0 chr13 15613094 15613678 -86259491 - L1PB1 LINE L1 -5 6146 5522 353 77 0 0 chr13 15613926 15613978 -86259191 + FAM SINE Alu 122 173 -2 209 298 60 48 chr13 15614279 15614363 -86258806 + L2 LINE L2 3143 3227 -45 323 328 106 16 chr13 15614471 15614660 -86258509 + MIR SINE MIR 23 228 -34 378 337 66 28 chr13 15615964 15616145 -86257024 + L2 LINE L2 2932 3119 -153 2121 241 30 35 chr13 15616270 15616846 -86256323 - L1ME1 LINE L1 -5688 854 282 611 266 60 22 chr13 15616873 15617057 -86256112 + MLT1L LTR MaLR 43 233 -382 235 221 84 63 chr13 15617084 15617179 -86255990 - MER5A DNA MER1_type -86 103 7 2183 119 0 7 chr13 15617231 15617533 -86255636 + AluSg SINE Alu 1 300 -10 682 272 109 18 chr13 15617543 15617826 -86255343 + MLT1L LTR MaLR 295 603 -12 198 0 0 0 chr13 15617949 15617971 -86255198 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 1120 241 16 4 chr13 15618207 15618456 -86254713 - MER112 DNA MER1_type -1 259 8 278 294 102 99 chr13 15619293 15619636 -86253533 + L2 LINE L2 2913 3256 -16 4823 177 27 29 chr13 15619680 15620247 -86252922 + L1MB3 LINE L1 4838 5405 -778 2096 129 3 0 chr13 15620247 15620541 -86252628 + AluSq SINE Alu 1 295 -18 4823 177 27 29 chr13 15620541 15621321 -86251848 + L1MB3 LINE L1 5405 6183 0 1739 127 35 0 chr13 15622286 15622545 -86250624 + AluSg SINE Alu 36 303 -7 231 241 0 0 chr13 15622652 15622706 -86250463 - MER5B DNA MER1_type -124 54 1 1847 272 118 41 chr13 15622729 15624069 -86249100 - L2 LINE L2 -42 3271 1825 1688 116 8 0 chr13 15624120 15624362 -86248807 - L1MB2 LINE L1 -125 6046 5803 483 33 0 0 chr13 15627487 15627548 -86245621 + (CA)n Simple_repeat Simple_repeat 2 62 0 195 258 318 0 chr13 15627661 15627727 -86245442 - MER5A DNA MER1_type -94 95 9 428 301 30 12 chr13 15628383 15628549 -86244620 - MIR SINE MIR -24 238 70 349 317 20 0 chr13 15628816 15628917 -86244252 + L2 LINE L2 3208 3310 -3 271 258 11 34 chr13 15629419 15629508 -86243661 + MER5A DNA MER1_type 97 183 -6 505 254 14 28 chr13 15629949 15630091 -86243078 - L2 LINE L2 0 3272 3133 396 125 0 0 chr13 15630462 15630526 -86242643 + (GA)n Simple_repeat Simple_repeat 1 64 0 1227 158 171 40 chr13 15630527 15630849 -86242320 - MLT1B LTR MaLR 0 390 27 1350 77 0 22 chr13 15630942 15631123 -86242046 - L1PB1 LINE L1 -1 6150 5974 2355 76 0 7 chr13 15632453 15632757 -86240412 + AluSq SINE Alu 1 302 -11 25 0 0 0 chr13 15632917 15632942 -86240227 + AT_rich Low_complexity Low_complexity 1 25 0 2417 57 17 0 chr13 15633202 15633499 -86239670 - AluY SINE Alu -9 302 1 455 249 37 69 chr13 15633649 15633838 -86239331 + MER5A DNA MER1_type 7 189 0 259 257 162 13 chr13 15633962 15634111 -86239058 - MIR3 SINE MIR -2 206 36 202 359 29 35 chr13 15634606 15634776 -86238393 + L3b LINE CR1 1317 1485 -98 288 363 14 7 chr13 15634903 15635049 -86238120 - ERVL LTR ERVL -765 4999 4853 1739 216 95 31 chr13 15635485 15635906 -86237263 - LTR16A LTR ERVL -2 448 1 1182 308 70 29 chr13 15636528 15637188 -86235981 - ERVL LTR ERVL -867 4787 4102 647 193 20 7 chr13 15637194 15637344 -86235825 + Charlie1 DNA MER1_type 2610 2761 0 342 0 0 0 chr13 15637739 15637777 -86235392 + (TG)n Simple_repeat Simple_repeat 2 39 0 2151 122 0 10 chr13 15638249 15638552 -86234617 + AluSx SINE Alu 1 300 -12 1023 186 41 23 chr13 15640760 15640980 -86232189 - L1MC1 LINE L1 -13 6320 6097 1375 188 16 8 chr13 15640980 15641161 -86232008 - AluJo SINE Alu -3 309 124 8163 21 5 0 chr13 15641161 15642121 -86231048 + L1PA3 LINE L1 5191 6154 -1 1375 188 16 8 chr13 15642121 15642195 -86230974 - AluJo SINE Alu -188 124 52 2347 138 30 51 chr13 15642228 15642662 -86230507 - L1MC1 LINE L1 -227 6106 5682 3079 139 24 6 chr13 15642666 15643161 -86230008 - L1MB3 LINE L1 -1 6182 5679 545 192 8 0 chr13 15643162 15643282 -86229887 + CT-rich Low_complexity Low_complexity 3 123 0 380 148 15 25 chr13 15643297 15643374 -86229795 - L1P5 LINE L1 -478 5676 5605 * 5433 187 50 31 chr13 15643369 15644365 -86228804 - L1MB3 LINE L1 -649 5695 4657 2521 46 3 3 chr13 15644365 15644669 -86228500 - AluY SINE Alu -7 304 1 5433 187 50 31 chr13 15644669 15645446 -86227723 - L1MB3 LINE L1 -1687 4657 3896 805 99 0 0 chr13 15645493 15645594 -86227575 - AluS SINE Alu -211 102 2 1387 247 63 18 chr13 15645625 15646052 -86227117 + LTR51 LTR ERV1 228 842 -81 325 226 75 82 chr13 15646638 15646797 -86226372 + MIR SINE MIR 105 262 0 250 333 11 11 chr13 15646864 15646954 -86226215 + MIR SINE MIR 20 109 -153 508 224 64 26 chr13 15646966 15647122 -86226047 - MER5A DNA MER1_type -21 168 7 218 169 231 0 chr13 15648522 15648587 -86224582 - L2 LINE L2 0 3272 3193 1615 115 77 4 chr13 15648720 15648955 -86224214 - L1PB3 LINE L1 0 6154 5903 193 133 0 0 chr13 15649013 15649043 -86224126 + MIR SINE MIR 158 187 -75 207 209 0 23 chr13 15649310 15649353 -86223816 + CT-rich Low_complexity Low_complexity 4 45 0 1421 134 17 26 chr13 15650345 15650443 -86222726 - MER30 DNA MER1_type 0 230 133 2392 106 0 0 chr13 15650443 15650746 -86222423 - AluSx SINE Alu -9 303 1 1421 134 17 26 chr13 15650746 15650879 -86222290 - MER30 DNA MER1_type -97 133 1 186 43 0 0 chr13 15650960 15650983 -86222186 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1901 94 4 0 chr13 15651293 15651538 -86221631 - AluSx SINE Alu -6 306 61 3908 148 6 16 chr13 15652558 15653202 -86219967 - L1MB3 LINE L1 0 6183 5546 2266 113 3 3 chr13 15653213 15653522 -86219647 - AluSx SINE Alu -3 309 1 1061 250 24 15 chr13 15654904 15655206 -86217963 + MLT2D LTR ERVL 66 366 -48 725 139 20 0 chr13 15655215 15655472 -86217697 + (TG)n Simple_repeat Simple_repeat 1 262 0 923 76 41 0 chr13 15655490 15655662 -86217507 + (TG)n Simple_repeat Simple_repeat 2 180 0 303 130 0 0 chr13 15655682 15655728 -86217441 + MLT2D LTR ERVL 473 518 -2 884 289 141 22 chr13 15655883 15656344 -86216825 - LTR33 LTR ERVL -4 517 2 681 155 84 39 chr13 15656936 15657091 -86216078 + MER96 DNA MER1_type? 14 175 0 318 26 0 0 chr13 15658530 15658569 -86214600 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 0 0 0 chr13 15658618 15658646 -86214523 + AT_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr13 15658765 15658818 -86214351 + AT_rich Low_complexity Low_complexity 1 53 0 198 291 25 25 chr13 15659619 15659698 -86213471 - MIR SINE MIR 0 262 184 2439 60 7 0 chr13 15659782 15660080 -86213089 + AluY SINE Alu 1 300 -11 537 271 91 50 chr13 15660133 15660489 -86212680 + L1ME3A LINE L1 5208 5579 -583 325 367 59 23 chr13 15660514 15660819 -86212350 + L1ME3A LINE L1 5625 5940 -230 304 160 0 0 chr13 15661493 15661543 -86211626 - L2 LINE L2 -2 3311 3262 909 337 104 15 chr13 15661543 15661925 -86211244 + L2 LINE L2 2202 2549 -765 1912 134 26 35 chr13 15661925 15662238 -86210931 - AluSx SINE Alu -2 310 1 909 337 104 15 chr13 15662238 15662568 -86210601 + L2 LINE L2 2549 2977 -337 422 276 78 0 chr13 15662611 15662727 -86210442 - L2 LINE L2 0 3313 3189 486 263 26 53 chr13 15662891 15663043 -86210126 + L2 LINE L2 3124 3271 -1 274 270 118 33 chr13 15663185 15663337 -86209832 - L2 LINE L2 -1605 1709 1545 762 216 34 6 chr13 15663417 15663593 -86209576 + MER33 DNA MER1_type 6 186 -138 3709 140 42 32 chr13 15663622 15664244 -86208925 + MER82 DNA MER2_type 25 652 -1 545 190 28 21 chr13 15664244 15664372 -86208797 + MER33 DNA MER1_type 192 320 -4 22 0 0 0 chr13 15666359 15666381 -86206788 + AT_rich Low_complexity Low_complexity 1 22 0 281 211 119 0 chr13 15667137 15667246 -86205923 - L1ME4a LINE L1 0 6121 6000 21 0 0 0 chr13 15667974 15667995 -86205174 + AT_rich Low_complexity Low_complexity 1 21 0 209 302 0 16 chr13 15668074 15668137 -86205032 - MIR3 SINE MIR -8 200 139 2395 180 40 4 chr13 15668455 15668905 -86204264 - MLT1C LTR MaLR 0 467 2 445 198 155 9 chr13 15668968 15669084 -86204085 - MIR SINE MIR -88 174 42 1129 255 81 15 chr13 15669121 15669718 -86203451 - L2 LINE L2 -18 3295 2328 282 242 0 16 chr13 15669926 15669988 -86203181 + L2 LINE L2 3210 3270 -2 1026 190 0 0 chr13 15670061 15670235 -86202934 + AluJo SINE Alu 122 295 -17 291 204 0 0 chr13 15670240 15670289 -86202880 + AluSc SINE Alu 125 173 -126 343 197 0 0 chr13 15671393 15671459 -86201710 - Alu SINE Alu 0 302 237 189 0 0 0 chr13 15671500 15671521 -86201648 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1657 167 0 57 chr13 15671524 15671823 -86201346 - AluJo SINE Alu -30 282 1 22 0 0 0 chr13 15672333 15672355 -86200814 + AT_rich Low_complexity Low_complexity 1 22 0 1230 217 20 23 chr13 15672674 15672796 -86200373 - L1MA4 LINE L1 -5 6295 6174 1062 62 12 12 chr13 15672796 15672957 -86200212 + (TTTC)n Simple_repeat Simple_repeat 3 163 0 1677 140 62 11 chr13 15672957 15673224 -86199945 - AluSq SINE Alu -32 281 1 1230 217 20 23 chr13 15673224 15673404 -86199765 - L1MA4 LINE L1 -124 6176 5998 3468 288 176 24 chr13 15673671 15673822 -86199347 - L2 LINE L2 -2 3311 3184 4727 167 57 16 chr13 15673822 15674653 -86198516 - MER6 DNA MER2_type 0 865 1 3468 288 176 24 chr13 15674653 15675653 -86197516 - L2 LINE L2 -129 3184 2338 2636 156 30 26 chr13 15675653 15676083 -86197086 + Tigger2a DNA MER2_type 3 434 0 3468 288 176 24 chr13 15676083 15677417 -86195752 - L2 LINE L2 -975 2338 451 2119 142 0 0 chr13 15677427 15677729 -86195440 - AluSx SINE Alu -10 302 1 309 320 131 8 chr13 15678151 15678410 -86194759 - L2 LINE L2 -645 2669 2379 119 37 0 0 chr13 15678428 15678589 -86194580 + AT_rich Low_complexity Low_complexity 1 161 0 315 276 121 75 chr13 15678764 15678985 -86194184 - L1ME4a LINE L1 -233 5888 5646 951 196 28 0 chr13 15678985 15679164 -86194005 - L1MD1 LINE L1 0 6242 6059 315 276 121 75 chr13 15679164 15679264 -86193905 - L1ME4a LINE L1 -475 5646 5552 239 304 80 64 chr13 15679406 15679656 -86193513 + MLT1J1 LTR MaLR 58 311 -135 785 121 49 197 chr13 15679773 15680037 -86193132 + MLT1A1 LTR MaLR 1 225 -149 579 230 59 0 chr13 15680189 15680341 -86192828 + L2 LINE L2 2448 2608 -706 630 80 0 0 chr13 15680385 15680460 -86192709 + AluY SINE Alu 218 292 -19 1286 249 47 64 chr13 15680502 15680934 -86192235 + L2 LINE L2 2853 3278 -35 1908 209 96 24 chr13 15680934 15681402 -86191767 - MLT1D LTR MaLR -3 502 1 1286 249 47 64 chr13 15681402 15681438 -86191731 + L2 LINE L2 3278 3313 0 599 307 115 16 chr13 15682120 15682364 -86190805 + L3 LINE CR1 1301 1568 -9 285 306 41 27 chr13 15682410 15682557 -86190612 - LTR67 LTR ERVL 0 557 409 525 334 77 13 chr13 15683092 15683658 -86189511 - L1MD1 LINE L1 -755 5391 5176 227 155 14 113 chr13 15685464 15685535 -86187634 - HAL1 LINE L1 -121 2386 2323 455 216 97 15 chr13 15685570 15685704 -86187465 - HAL1 LINE L1 -314 2193 2049 1805 187 62 40 chr13 15685732 15685779 -86187390 - L1MCb LINE L1 -5015 1030 985 285 29 0 0 chr13 15685779 15685813 -86187356 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1805 187 62 40 chr13 15685813 15686187 -86186982 - L1MCb LINE L1 -5060 985 600 460 198 72 27 chr13 15688524 15688635 -86184534 - MER117 DNA MER1_type -3 194 79 927 311 83 11 chr13 15688697 15689141 -86184028 - L2 LINE L2 0 3313 2838 5241 141 21 27 chr13 15689147 15689582 -86183587 + L1MA8 LINE L1 5168 5604 -708 1933 164 0 16 chr13 15689582 15689894 -86183275 + AluJo SINE Alu 1 307 -5 5241 141 21 27 chr13 15689894 15690461 -86182708 + L1MA8 LINE L1 5604 6142 -170 2303 109 3 3 chr13 15690461 15690773 -86182396 - AluSx SINE Alu 0 312 1 5241 141 21 27 chr13 15690773 15690919 -86182250 + L1MA8 LINE L1 6142 6287 -25 180 0 0 0 chr13 15690920 15690940 -86182229 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 204 281 172 0 chr13 15691005 15691069 -86182100 - L2 LINE L2 0 3313 3239 2136 110 3 0 chr13 15691897 15692179 -86180990 + AluSx SINE Alu 1 283 -29 266 210 81 0 chr13 15693159 15693221 -86179948 - MIR SINE MIR -115 147 81 206 106 43 21 chr13 15694306 15694353 -86178816 + (CGGG)n Simple_repeat Simple_repeat 2 49 0 358 319 129 74 chr13 15694373 15695131 -86178038 + L1M2 LINE L1 471 1270 -5579 225 0 0 0 chr13 15697668 15697693 -86175476 + (TG)n Simple_repeat Simple_repeat 1 25 0 362 119 48 0 chr13 15697693 15697777 -86175392 + GA-rich Low_complexity Low_complexity 2 89 0 1216 282 175 10 chr13 15698185 15698798 -86174371 + L2 LINE L2 1954 2667 -647 2227 99 0 7 chr13 15699570 15699862 -86173307 + AluSq SINE Alu 1 290 -23 211 267 13 67 chr13 15700573 15700648 -86172521 + L2 LINE L2 2957 3027 -245 196 368 35 11 chr13 15700686 15700773 -86172396 + L2 LINE L2 3149 3237 -35 301 265 147 1 chr13 15700985 15701111 -86172058 - MLT1J2 LTR MaLR -223 227 99 337 330 168 21 chr13 15701834 15702119 -86171050 - L3 LINE CR1 -11 1566 1240 187 152 0 0 chr13 15702221 15702254 -86170915 - MIR SINE MIR -10 252 220 905 202 43 58 chr13 15703228 15703436 -86169733 - MER58A DNA MER1_type 0 224 20 709 242 144 28 chr13 15703599 15703884 -86169285 - L3 LINE CR1 -464 1113 796 266 250 37 56 chr13 15704220 15704328 -86168841 + MLT1H LTR MaLR 440 545 -4 303 222 56 0 chr13 15704335 15704407 -86168762 + HAL1 LINE L1 1268 1343 -1164 512 244 9 0 chr13 15704433 15704548 -86168621 - HERV16 LTR ERVL -3169 1827 1712 1465 320 53 18 chr13 15704571 15705234 -86167935 - HERV16 LTR ERVL -3539 1457 772 251 241 69 0 chr13 15705294 15705352 -86167817 - HERV16 LTR ERVL -4320 676 615 303 323 55 18 chr13 15705617 15705781 -86167388 - HERV16 LTR ERVL -4766 230 61 1844 247 33 20 chr13 15705801 15706259 -86166910 - LTR16B LTR ERVL 0 464 1 1278 259 154 22 chr13 15706259 15706843 -86166326 + HAL1 LINE L1 1531 2191 -316 429 213 213 62 chr13 15706845 15707070 -86166099 + HAL1 LINE L1 2235 2493 -14 22 88 0 0 chr13 15707071 15707128 -86166041 + AT_rich Low_complexity Low_complexity 1 57 0 194 348 37 31 chr13 15707179 15707340 -86165829 - L3 LINE CR1 -861 716 555 1489 199 65 70 chr13 15707552 15707597 -86165572 - MSTD LTR MaLR 0 396 352 2397 63 0 0 chr13 15707597 15707907 -86165262 - AluY SINE Alu 0 310 1 1489 199 65 70 chr13 15707907 15708258 -86164911 - MSTD LTR MaLR -44 352 1 842 306 15 6 chr13 15708767 15709103 -86164066 + HAL1 LINE L1 1032 1370 -1137 779 269 200 37 chr13 15709106 15709841 -86163328 + HAL1 LINE L1 1642 2496 -11 268 294 94 0 chr13 15709930 15710015 -86163154 - MIR SINE MIR -86 122 30 603 264 194 65 chr13 15710226 15710753 -86162416 - MLT1G1 LTR MaLR 0 595 1 279 341 83 30 chr13 15710781 15710913 -86162256 + L2 LINE L2 2953 3091 -181 230 288 121 79 chr13 15711423 15711638 -86161531 + L2 LINE L2 2837 3060 -253 250 262 12 36 chr13 15712295 15712379 -86160790 + LTR37B LTR ERV1 117 198 -270 * 297 259 12 12 chr13 15712368 15712453 -86160716 + LTR37A LTR ERV1 111 195 -231 797 203 32 60 chr13 15712528 15712779 -86160390 + L2 LINE L2 3065 3308 -5 495 227 53 0 chr13 15712858 15712990 -86160179 + MER112 DNA MER1_type 77 215 -45 489 125 50 0 chr13 15714307 15714427 -86158742 + (CA)n Simple_repeat Simple_repeat 2 127 0 245 157 0 59 chr13 15714532 15714583 -86158586 - MLT1K LTR MaLR -317 271 224 318 192 41 0 chr13 15714752 15714825 -86158344 + L1MB2 LINE L1 6096 6171 0 282 282 64 0 chr13 15715169 15715247 -86157922 + L2 LINE L2 3229 3311 -2 645 222 100 123 chr13 15715461 15715812 -86157357 + MLT1H LTR MaLR 1 343 -206 408 263 62 96 chr13 15716890 15717309 -86155860 - L1ME4a LINE L1 -4 6117 5713 193 196 0 22 chr13 15717309 15717355 -86155814 + L2 LINE L2 3269 3313 0 765 257 82 31 chr13 15718836 15719093 -86154076 + L2 LINE L2 2451 2720 -594 327 209 132 54 chr13 15719096 15719225 -86153944 + L1ME2 LINE L1 5886 6024 -140 538 156 19 14 chr13 15719228 15719330 -86153839 - L1ME LINE L1 -357 5805 5705 648 49 0 24 chr13 15719330 15719412 -86153757 + MADE1 DNA Mariner 1 80 0 538 156 19 14 chr13 15719412 15719432 -86153737 - L1ME LINE L1 -457 5705 5687 815 165 129 31 chr13 15719486 15719680 -86153489 - MIR SINE MIR -42 220 8 234 180 369 9 chr13 15719899 15720010 -86153159 + L2 LINE L2 3159 3309 -4 21 0 0 0 chr13 15720031 15720052 -86153117 + AT_rich Low_complexity Low_complexity 1 21 0 3010 206 36 81 chr13 15720221 15720657 -86152512 - L1ME2 LINE L1 -36 6197 5743 2118 101 0 10 chr13 15720657 15720954 -86152215 - AluSq SINE Alu -19 294 1 3010 206 36 81 chr13 15720954 15721201 -86151968 - L1ME2 LINE L1 -490 5743 5565 2004 144 14 0 chr13 15721201 15721492 -86151677 - AluSx SINE Alu -17 295 1 3010 206 36 81 chr13 15721492 15721741 -86151428 - L1ME2 LINE L1 -668 5565 5306 358 228 89 0 chr13 15721747 15721848 -86151321 + L1M4 LINE L1 5120 5229 -917 2425 231 78 5 chr13 15721869 15722612 -86150557 - L1ME2 LINE L1 -1033 5182 4386 1107 141 0 50 chr13 15722614 15722813 -86150356 - AluJo SINE Alu 0 312 124 751 173 72 43 chr13 15722813 15722927 -86150242 - L1ME2 LINE L1 -1838 4377 4253 183 42 0 0 chr13 15722927 15722951 -86150218 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 751 173 72 43 chr13 15722951 15723044 -86150125 - L1ME2 LINE L1 -1962 4253 4164 6158 231 27 28 chr13 15723046 15723452 -86149717 - L1M4 LINE L1 -1717 4429 4024 2208 68 14 0 chr13 15723452 15723754 -86149415 - AluSp SINE Alu 0 306 1 6158 231 27 28 chr13 15723754 15725191 -86147978 - L1M4 LINE L1 -2122 4024 2588 674 257 78 47 chr13 15725172 15725329 -86147840 - L1ME2 LINE L1 -3930 2466 2315 * 2093 84 84 0 chr13 15725329 15725603 -86147566 - AluSg SINE Alu -13 297 1 674 257 78 47 chr13 15725603 15725869 -86147300 - L1ME2 LINE L1 -4081 2315 2030 601 304 94 38 chr13 15725885 15726744 -86146425 - L1ME2 LINE L1 -5152 1053 173 277 202 119 36 chr13 15727488 15727572 -86145597 - L2 LINE L2 -213 3059 2969 240 261 0 0 chr13 15728103 15728168 -86145001 - L1ME LINE L1 -367 5754 5690 230 281 45 11 chr13 15728810 15728899 -86144270 - MIR SINE MIR -57 205 114 341 258 22 0 chr13 15729078 15729167 -86144002 - MIR SINE MIR -12 250 160 1682 157 40 30 chr13 15729226 15729526 -86143643 + AluJo SINE Alu 1 303 -9 1517 178 6 38 chr13 15729922 15730242 -86142927 - AluJo SINE Alu -2 310 1 2297 52 0 35 chr13 15734500 15734790 -86138379 + AluY SINE Alu 13 292 -19 2483 72 7 0 chr13 15736299 15736606 -86136563 - AluY SINE Alu -2 309 1 2305 117 0 0 chr13 15737428 15737737 -86135432 - AluSg SINE Alu -1 309 1 1635 163 67 11 chr13 15737928 15738211 -86134958 - AluJb SINE Alu -13 299 1 1767 171 7 10 chr13 15740064 15740357 -86132812 + AluJb SINE Alu 2 293 -19 2303 125 0 0 chr13 15740357 15740662 -86132507 + AluSx SINE Alu 1 305 -7 2054 141 42 12 chr13 15740719 15741272 -86131897 - LTR31 LTR ERV1 -9 610 1 2265 90 0 23 chr13 15741458 15741759 -86131410 + AluSc SINE Alu 1 294 -15 630 160 16 0 chr13 15743657 15743782 -86129387 - L1ME4a LINE L1 -3 6118 5992 398 245 133 0 chr13 15743803 15743954 -86129215 - L1ME4a LINE L1 -204 5917 5747 1800 141 7 4 chr13 15744918 15745187 -86127982 + AluJo SINE Alu 13 282 -30 931 160 50 0 chr13 15745249 15745449 -86127720 - Charlie5 DNA MER1_type 0 2623 2414 230 350 60 10 chr13 15745600 15745700 -86127469 + L2 LINE L2 3168 3272 0 333 0 0 0 chr13 15746376 15746413 -86126756 + (T)n Simple_repeat Simple_repeat 1 37 0 231 206 88 29 chr13 15746505 15746573 -86126596 + MIR SINE MIR 73 144 -118 334 295 0 32 chr13 15748595 15748690 -86124479 + MIR SINE MIR 60 151 -57 445 220 262 0 chr13 15748699 15748840 -86124329 + MER5B DNA MER1_type 1 178 0 453 233 164 25 chr13 15748847 15749006 -86124163 - MER5A DNA MER1_type 0 189 9 1889 112 26 0 chr13 15749262 15749531 -86123638 - L1PA11 LINE L1 -7 6167 5892 27 29 0 0 chr13 15749892 15749926 -86123243 + AT_rich Low_complexity Low_complexity 1 34 0 278 223 284 20 chr13 15751254 15751402 -86121767 + L2 LINE L2 3127 3313 0 511 174 143 0 chr13 15752205 15752303 -86120866 - MER5B DNA MER1_type 0 178 67 763 204 49 35 chr13 15752344 15752570 -86120599 + LTR33A LTR ERVL 274 502 -21 468 0 0 0 chr13 15753384 15753436 -86119733 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 287 47 67 chr13 15753694 15753756 -86119413 - MIR SINE MIR -102 160 98 1218 152 221 70 chr13 15753756 15754072 -86119097 - MLT1A1 LTR MaLR 0 365 2 311 287 47 67 chr13 15754072 15754159 -86119010 - MIR SINE MIR -164 98 14 877 216 161 63 chr13 15754552 15754899 -86118270 + MER45R DNA AcHobo 1 381 -1200 245 152 0 0 chr13 15754915 15754961 -86118208 + MER45R DNA AcHobo 890 935 -646 1964 154 3 0 chr13 15754970 15755263 -86117906 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr13 15755268 15755288 -86117881 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2782 153 40 80 chr13 15755307 15755861 -86117308 + MER45R DNA AcHobo 930 1454 -127 2319 113 0 0 chr13 15755861 15756163 -86117006 - AluSx SINE Alu -10 302 1 2782 153 40 80 chr13 15756163 15756287 -86116882 + MER45R DNA AcHobo 1454 1581 0 1293 214 4 0 chr13 15756796 15757030 -86116139 - Charlie1a DNA MER1_type -1218 237 3 2218 109 0 19 chr13 15757307 15757620 -86115549 + AluSc SINE Alu 1 307 -2 425 319 57 69 chr13 15757695 15758084 -86115085 + HAL1 LINE L1 1218 1601 -906 1049 126 222 104 chr13 15758390 15758660 -86114509 - AluJo SINE Alu 0 302 1 238 226 0 48 chr13 15759023 15759107 -86114062 + A-rich Low_complexity Low_complexity 4 83 0 748 186 7 0 chr13 15759121 15759261 -86113908 + L1MC3 LINE L1 7451 7591 -194 204 97 0 0 chr13 15759529 15759560 -86113609 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 387 301 65 115 chr13 15759562 15759901 -86113268 - L2 LINE L2 -12 3260 2939 607 295 85 66 chr13 15760123 15760733 -86112436 + L1MD1 LINE L1 3356 3953 -2193 1836 135 62 0 chr13 15760733 15761022 -86112147 + AluSx SINE Alu 1 307 -5 607 295 85 66 chr13 15761022 15761190 -86111979 + L1MD1 LINE L1 3953 4116 -2030 743 178 0 31 chr13 15761190 15761319 -86111850 + FLAM_A SINE Alu 1 125 -8 607 295 85 66 chr13 15761319 15761459 -86111710 + L1MD1 LINE L1 4116 4292 -1854 225 154 0 0 chr13 15762134 15762173 -86110996 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 375 284 111 65 chr13 15762384 15762934 -86110235 + L1MD1 LINE L1 5330 5829 -413 189 121 0 0 chr13 15762977 15763010 -86110159 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 250 240 0 0 chr13 15763071 15763121 -86110048 + GA-rich Low_complexity Low_complexity 1 50 0 452 169 17 17 chr13 15763145 15763263 -86109906 + GA-rich Low_complexity Low_complexity 3 120 0 2107 229 44 50 chr13 15765858 15766475 -86106694 + MER97a DNA MER1_type? 4 616 -278 1206 186 5 0 chr13 15766481 15766701 -86106468 + L1M4 LINE L1 5438 5658 -526 739 203 32 0 chr13 15766702 15766860 -86106309 - MLT1F1 LTR MaLR -403 164 2 21 0 0 0 chr13 15767051 15767072 -86106097 + AT_rich Low_complexity Low_complexity 1 21 0 254 270 140 10 chr13 15767894 15767994 -86105175 + MIR SINE MIR 39 151 -111 227 231 0 0 chr13 15768039 15768091 -86105078 + L1MC4 LINE L1 6652 6703 -1339 2144 94 75 70 chr13 15768120 15768492 -86104677 - THE1C LTR MaLR -1 374 1 611 278 81 63 chr13 15771823 15772107 -86101062 + L2 LINE L2 3024 3312 -1 2237 161 75 50 chr13 15772197 15772613 -86100556 - MSTB LTR MaLR 0 426 1 2693 97 17 36 chr13 15772757 15772807 -86100362 - L1MA4 LINE L1 -4 6296 6247 216 0 0 0 chr13 15772807 15772831 -86100338 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2289 88 0 0 chr13 15772831 15773114 -86100055 - AluSx SINE Alu -29 283 1 2693 97 17 36 chr13 15773114 15773475 -86099694 - L1MA4 LINE L1 -51 6249 5892 2640 133 31 0 chr13 15773475 15773897 -86099272 + L1MA4 LINE L1 5409 5843 -457 1867 199 126 36 chr13 15774228 15774575 -86098594 - MLT2B1 LTR ERVL 0 520 117 17372 131 32 12 chr13 15774575 15777240 -86095929 - Tigger2 DNA MER2_type 0 2718 2 1867 199 126 36 chr13 15777240 15777369 -86095800 - MLT2B1 LTR ERVL -403 117 1 180 302 43 52 chr13 15777369 15777485 -86095684 + L2 LINE L2 2276 2390 -924 293 343 120 50 chr13 15777496 15777796 -86095373 + L2 LINE L2 2369 2689 -625 2009 221 22 14 chr13 15778736 15779180 -86093989 - MER82 DNA MER2_type -7 646 199 1162 190 10 0 chr13 15779469 15779669 -86093500 - MER82 DNA MER2_type -451 202 1 512 92 51 51 chr13 15780264 15780362 -86092807 - L1MA5A LINE L1 -3 6294 6197 27 0 0 0 chr13 15781132 15781159 -86092010 + AT_rich Low_complexity Low_complexity 1 27 0 362 236 194 0 chr13 15781505 15781649 -86091520 + MER5A DNA MER1_type 8 179 -10 209 238 16 16 chr13 15783185 15783248 -86089921 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 21 82 0 0 chr13 15783316 15783365 -86089804 + AT_rich Low_complexity Low_complexity 1 49 0 1904 147 0 3 chr13 15784117 15784409 -86088760 + AluJb SINE Alu 1 291 -21 216 147 0 0 chr13 15784429 15784463 -86088706 - L2 LINE L2 -19 3253 3220 756 304 91 6 chr13 15785483 15785835 -86087334 + L3 LINE CR1 1190 1571 -6 277 331 171 7 chr13 15786352 15786621 -86086548 + L2 LINE L2 2967 3279 -34 636 246 104 5 chr13 15788273 15788493 -86084676 - MIR SINE MIR 0 262 21 507 133 61 8 chr13 15790398 15790635 -86082534 + (TCTA)n Simple_repeat Simple_repeat 1 249 0 237 323 42 0 chr13 15791051 15791147 -86082022 - MIR SINE MIR -142 120 21 276 196 54 115 chr13 15792051 15792199 -86080970 + Charlie7 DNA MER1_type 2427 2565 -47 742 267 63 55 chr13 15793466 15793863 -86079306 + MLT1L LTR MaLR 1 400 -215 225 196 107 0 chr13 15793907 15793963 -86079206 + MLT1L LTR MaLR 507 568 -47 241 340 59 55 chr13 15794242 15794498 -86078671 + L2 LINE L2 3004 3260 -12 2230 104 0 7 chr13 15795094 15795391 -86077778 - AluSx SINE Alu -17 295 1 296 267 0 22 chr13 15796401 15796491 -86076678 + MIR SINE MIR 125 212 -50 391 288 17 8 chr13 15796537 15796655 -86076514 - L2 LINE L2 0 3313 3195 522 236 20 92 chr13 15798659 15798757 -86074412 + MLT1L LTR MaLR 420 499 -116 1694 121 121 11 chr13 15798757 15799022 -86074147 - AluSg SINE Alu -16 294 1 522 236 20 92 chr13 15799022 15799118 -86074051 + MLT1L LTR MaLR 499 600 -15 2216 123 0 3 chr13 15799266 15799567 -86073602 + AluSx SINE Alu 1 300 -12 2066 129 0 44 chr13 15799652 15799833 -86073336 - AluSx SINE Alu -8 304 141 2267 118 0 0 chr13 15799833 15800129 -86073040 - AluSq SINE Alu -17 296 1 2066 129 0 44 chr13 15800129 15800265 -86072904 - AluSx SINE Alu -171 141 1 576 205 103 7 chr13 15800385 15800535 -86072634 + MER45A DNA AcHobo 13 178 0 2587 77 0 3 chr13 15800756 15801069 -86072100 + AluSx SINE Alu 1 312 0 213 65 0 0 chr13 15805855 15805886 -86067283 + (TG)n Simple_repeat Simple_repeat 1 31 0 408 172 16 8 chr13 15805886 15806008 -86067161 + GA-rich Low_complexity Low_complexity 2 124 0 433 208 12 0 chr13 15806054 15806227 -86066942 + GA-rich Low_complexity Low_complexity 1 175 0 204 318 0 0 chr13 15806804 15806867 -86066302 + L2 LINE L2 3209 3271 -1 441 175 0 0 chr13 15809514 15809594 -86063575 + AluJ/FRAM SINE Alu 219 298 -14 213 383 47 7 chr13 15809742 15809891 -86063278 + MIR SINE MIR 47 201 -61 1970 133 43 54 chr13 15810207 15810575 -86062594 + THE1B LTR MaLR 1 364 0 793 182 0 0 chr13 15810575 15810707 -86062462 + FLAM_A SINE Alu 11 142 0 600 290 29 29 chr13 15811566 15811811 -86061358 + MER112 DNA MER1_type 8 252 -8 308 310 125 47 chr13 15811968 15812177 -86060992 + L3 LINE CR1 280 520 -1057 1499 112 51 0 chr13 15812177 15812392 -86060777 + MER30 DNA MER1_type 5 230 0 308 310 125 47 chr13 15812392 15812479 -86060690 + L3 LINE CR1 520 599 -978 744 333 80 27 chr13 15812741 15813191 -86059978 + L3 LINE CR1 759 1232 -345 367 219 123 0 chr13 15813191 15813305 -86059864 + MER5C DNA MER1_type 1 128 -196 2093 133 7 0 chr13 15813833 15814127 -86059042 + AluSx SINE Alu 1 296 -16 2385 187 64 27 chr13 15814341 15814929 -86058240 + LTR27 LTR ERV1 3 680 -141 580 192 79 11 chr13 15815070 15815247 -86057922 + MER5C DNA MER1_type 132 320 -4 314 135 0 19 chr13 15815366 15815418 -86057751 - MER58A DNA MER1_type -11 96 46 375 300 74 58 chr13 15815457 15815767 -86057402 + L3 LINE CR1 1261 1575 -2 306 279 135 0 chr13 15817255 15817359 -86055810 + MIR SINE MIR 32 149 -113 2311 95 16 0 chr13 15818747 15819051 -86054118 - AluSx SINE Alu -3 309 1 326 348 118 9 chr13 15819209 15819430 -86053739 + MIR SINE MIR 4 248 -14 189 326 45 30 chr13 15819467 15819599 -86053570 - L2 LINE L2 -350 2963 2830 1280 164 9 35 chr13 15820025 15820256 -86052913 - AluJo SINE Alu -17 295 71 1308 208 58 61 chr13 15820829 15821190 -86051979 + MLT1A2 LTR MaLR 1 360 -14 255 143 0 0 chr13 15821263 15821298 -86051871 - Alu SINE Alu -267 35 1 892 204 78 13 chr13 15821303 15821533 -86051636 - L1ME3 LINE L1 -189 5973 5729 2277 98 3 7 chr13 15821535 15821842 -86051327 - AluSc SINE Alu -3 306 1 203 379 116 12 chr13 15822198 15822449 -86050720 + L2 LINE L2 2368 2644 -670 3035 201 106 61 chr13 15823091 15823892 -86049277 + L1ME1 LINE L1 5213 6220 -114 1842 146 0 33 chr13 15823892 15824032 -86049137 + AluJb SINE Alu 1 144 -168 2283 106 3 0 chr13 15824032 15824324 -86048845 + AluSx SINE Alu 1 293 -19 1842 146 0 33 chr13 15824324 15824485 -86048684 + AluJb SINE Alu 144 292 -20 3035 201 106 61 chr13 15824485 15824605 -86048564 + L1ME1 LINE L1 6220 6333 -1 4431 225 35 27 chr13 15824617 15825661 -86047508 + L1MC1 LINE L1 2 1054 -5488 213 65 0 0 chr13 15825661 15825692 -86047477 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5962 195 26 11 chr13 15825695 15827383 -86045786 + L1MC1 LINE L1 5119 6831 0 196 361 56 28 chr13 15828368 15828476 -86044693 - MIR3 SINE MIR -40 168 58 355 274 66 0 chr13 15828892 15828998 -86044171 - L2 LINE L2 -27 3245 3133 2280 186 29 10 chr13 15829186 15829601 -86043568 - MSTB LTR MaLR -1 425 3 2701 169 53 25 chr13 15830342 15830873 -86042296 + LTR35 LTR ERV1 73 618 0 340 287 37 19 chr13 15833298 15833406 -86039763 + MIR SINE MIR 151 260 -2 31 44 0 0 chr13 15833629 15833674 -86039495 + AT_rich Low_complexity Low_complexity 1 45 0 490 298 42 64 chr13 15834100 15834412 -86038757 + MER41E LTR ERV1 148 452 -60 465 206 36 198 chr13 15834555 15834803 -86038366 + MIR SINE MIR 45 252 -10 28 71 0 0 chr13 15835017 15835073 -86038096 + AT_rich Low_complexity Low_complexity 1 56 0 1980 153 0 7 chr13 15835375 15835683 -86037486 + AluSx SINE Alu 1 306 -6 246 105 0 0 chr13 15836173 15836211 -86036958 + (GA)n Simple_repeat Simple_repeat 2 39 0 3597 235 65 10 chr13 15837596 15839300 -86033869 + L1ME1 LINE L1 4235 6051 -115 1930 174 0 0 chr13 15839300 15839604 -86033565 - AluJo SINE Alu -8 304 1 3597 235 65 10 chr13 15839604 15839707 -86033462 + L1ME1 LINE L1 6051 6147 -19 2581 106 6 11 chr13 15839708 15840065 -86033104 - THE1A LTR MaLR 0 355 1 1176 70 6 0 chr13 15840065 15840222 -86032947 - THE1A-int LTR MaLR 0 1580 1423 * 4983 96 38 11 chr13 15840216 15840923 -86032246 - THE1A-int LTR MaLR -853 727 2 2684 93 8 8 chr13 15840924 15841279 -86031890 - THE1A LTR MaLR 0 355 1 2153 129 0 10 chr13 15841294 15841596 -86031573 + AluSx SINE Alu 1 299 -13 640 98 67 0 chr13 15841596 15841760 -86031409 + (TA)n Simple_repeat Simple_repeat 2 176 0 29 28 0 0 chr13 15841803 15841839 -86031330 + AT_rich Low_complexity Low_complexity 1 36 0 280 344 10 10 chr13 15842413 15842509 -86030660 + MIR SINE MIR 19 114 -94 200 200 18 0 chr13 15843042 15843097 -86030072 + CT-rich Low_complexity Low_complexity 2 57 0 315 357 16 8 chr13 15843125 15843251 -86029918 + L2 LINE L2 3185 3311 -2 2184 116 10 7 chr13 15844704 15845014 -86028155 + AluSx SINE Alu 1 311 -1 2969 92 2 12 chr13 15847898 15848302 -86024867 + L1MA1 LINE L1 5903 6302 0 21 36 0 0 chr13 15852248 15852276 -86020893 + AT_rich Low_complexity Low_complexity 1 28 0 738 275 67 37 chr13 15852331 15852693 -86020476 + MLT1I LTR MaLR 52 395 -14 1460 21 3 17 chr13 15855695 15856044 -86017125 + (GGAA)n Simple_repeat Simple_repeat 1 344 0 658 262 24 12 chr13 15857250 15857418 -86015751 + MIR SINE MIR 49 218 -44 201 325 106 63 chr13 15857559 15857796 -86015373 - L2 LINE L2 0 3272 3026 285 75 0 0 chr13 15859246 15859286 -86013883 + (CA)n Simple_repeat Simple_repeat 1 40 0 374 236 68 96 chr13 15860021 15860241 -86012928 + MER112 DNA MER1_type 5 218 -42 226 268 48 100 chr13 15860336 15860479 -86012690 + L2 LINE L2 2451 2579 -735 1712 94 31 5 chr13 15860479 15860703 -86012466 + MER30 DNA MER1_type 1 230 0 226 268 48 100 chr13 15860703 15860790 -86012379 + L2 LINE L2 2579 2669 -645 407 332 109 40 chr13 15860982 15861286 -86011883 + L2 LINE L2 2932 3256 -16 201 274 110 118 chr13 15862048 15862285 -86010884 + L2 LINE L2 2954 3188 -84 312 252 47 9 chr13 15862542 15862649 -86010520 + MIR SINE MIR 74 184 -78 227 295 54 60 chr13 15863417 15863566 -86009603 + L2 LINE L2 2702 2849 -465 2039 138 7 7 chr13 15865670 15865974 -86007195 - AluSx SINE Alu -8 304 1 207 179 0 0 chr13 15866467 15866506 -86006663 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 274 0 0 chr13 15867295 15867368 -86005801 + GA-rich Low_complexity Low_complexity 4 76 0 24 93 0 0 chr13 15867634 15867688 -86005481 + AT_rich Low_complexity Low_complexity 1 54 0 198 291 25 25 chr13 15868489 15868568 -86004601 - MIR SINE MIR 0 262 184 904 216 81 16 chr13 15868620 15868652 -86004517 + L1ME3 LINE L1 5695 5723 -439 2175 108 7 3 chr13 15868652 15868958 -86004211 + AluSg SINE Alu 1 307 -3 904 216 81 16 chr13 15868958 15869190 -86003979 + L1ME3 LINE L1 5723 5973 -189 250 143 0 0 chr13 15869195 15869230 -86003939 + Alu SINE Alu 1 35 -267 1310 205 58 61 chr13 15869303 15869664 -86003505 - MLT1A2 LTR MaLR -14 360 1 186 346 70 59 chr13 15869672 15869958 -86003211 - L2 LINE L2 -2110 1204 916 1303 157 9 26 chr13 15870237 15870466 -86002703 + AluJo SINE Alu 71 295 -17 230 326 45 30 chr13 15870893 15871025 -86002144 + L2 LINE L2 2831 2964 -350 1353 174 101 22 chr13 15872359 15872635 -86000534 + AluJb SINE Alu 1 298 -14 2328 113 3 0 chr13 15872773 15873082 -86000087 - AluSg SINE Alu 0 310 1 22 0 0 0 chr13 15873426 15873448 -85999721 + AT_rich Low_complexity Low_complexity 1 22 0 290 270 14 14 chr13 15873516 15873590 -85999579 + MIR SINE MIR 74 147 -61 436 265 12 96 chr13 15874726 15874819 -85998350 - MIR SINE MIR -27 235 160 2203 104 3 0 chr13 15874819 15875107 -85998062 + AluSp SINE Alu 5 293 -20 436 265 12 96 chr13 15875107 15875179 -85997990 - MIR SINE MIR -102 160 84 258 276 106 65 chr13 15875665 15875835 -85997334 - MIR SINE MIR -41 221 45 579 215 44 0 chr13 15877969 15878104 -85995065 + MIR SINE MIR 53 193 -69 38 40 0 27 chr13 15878267 15878301 -85994868 + AT_rich Low_complexity Low_complexity 1 34 -38 1903 124 35 18 chr13 15878301 15878584 -85994585 + AluSx SINE Alu 1 288 -24 38 40 0 27 chr13 15878584 15878623 -85994546 + AT_rich Low_complexity Low_complexity 34 72 0 995 306 98 30 chr13 15878623 15879163 -85994006 + Charlie7 DNA MER1_type 113 689 -1923 388 182 25 66 chr13 15879148 15879269 -85993900 + Charlie7 DNA MER1_type 2497 2612 0 * 279 0 0 0 chr13 15879615 15879646 -85993523 + (TG)n Simple_repeat Simple_repeat 2 32 0 2215 103 7 0 chr13 15880087 15880388 -85992781 + AluY SINE Alu 1 303 -8 821 290 38 76 chr13 15880499 15880975 -85992194 + L2 LINE L2 2851 3308 -5 240 209 0 0 chr13 15881529 15881572 -85991597 + L2 LINE L2 3219 3261 -11 2451 73 3 19 chr13 15882938 15883254 -85989915 + AluY SINE Alu 1 311 0 213 22 0 89 chr13 15883259 15883304 -85989865 + (TAAAAA)n Simple_repeat Simple_repeat 4 44 0 600 212 123 41 chr13 15884144 15884314 -85988855 - L1ME LINE L1 -382 5739 5556 222 319 122 80 chr13 15884643 15885044 -85988125 - L2 LINE L2 -2 3270 2853 204 326 11 65 chr13 15886194 15886286 -85986883 - MIR SINE MIR -95 113 27 189 0 0 0 chr13 15887713 15887734 -85985435 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr13 15888565 15888595 -85984574 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 361 78 44 chr13 15890531 15890944 -85982225 - L2 LINE L2 -337 2977 2551 463 257 77 22 chr13 15890993 15891176 -85981993 + L1MC/D LINE L1 5625 5817 -1991 295 197 0 118 chr13 15891365 15891441 -85981728 - MER91B DNA MER1_type -129 67 1 1599 175 11 7 chr13 15891900 15892169 -85981000 + AluJb SINE Alu 12 281 -31 192 40 0 0 chr13 15892173 15892198 -85980971 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 581 259 138 0 chr13 15892584 15892773 -85980396 + MIR SINE MIR 38 252 -10 76 51 0 0 chr13 15893356 15893474 -85979695 + AT_rich Low_complexity Low_complexity 1 118 0 259 221 52 39 chr13 15893580 15893657 -85979512 - L1ME4a LINE L1 -108 6013 5936 1795 149 41 16 chr13 15893688 15894003 -85979166 + MER2 DNA MER2_type 22 344 -1 372 43 0 0 chr13 15894004 15894050 -85979119 + (TG)n Simple_repeat Simple_repeat 1 46 0 251 239 14 14 chr13 15894050 15894121 -85979048 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 555 96 0 0 chr13 15896854 15896937 -85976232 + (CA)n Simple_repeat Simple_repeat 2 84 0 6851 86 3 5 chr13 15897979 15898921 -85974248 + L1PB1 LINE L1 5210 6150 -1 2560 167 57 5 chr13 15898949 15899391 -85973778 + LTR32 LTR ERVL 7 471 0 225 108 0 0 chr13 15900181 15900218 -85972951 + (CA)n Simple_repeat Simple_repeat 2 38 0 2328 157 68 30 chr13 15900308 15900748 -85972421 + LTR32 LTR ERVL 15 471 0 306 139 0 0 chr13 15901575 15901618 -85971551 - MER45A DNA AcHobo 0 178 136 848 67 0 0 chr13 15901641 15901746 -85971423 + AluY SINE Alu 206 310 -1 1704 149 103 0 chr13 15901748 15902029 -85971140 + AluJo SINE Alu 1 310 -2 447 251 56 39 chr13 15902171 15902350 -85970819 + L2 LINE L2 3108 3289 -24 2368 101 0 3 chr13 15902609 15902917 -85970252 + AluSg SINE Alu 1 307 -3 1960 140 70 3 chr13 15903286 15903629 -85969540 - L1MB2 LINE L1 -7 6164 5799 620 182 6 136 chr13 15903830 15903910 -85969259 - MER45A DNA AcHobo -1403 178 132 2648 150 56 23 chr13 15903910 15904067 -85969102 + L1MB2 LINE L1 5670 5820 -351 2261 107 0 0 chr13 15904067 15904356 -85968813 + AluSc SINE Alu 1 289 -20 2648 150 56 23 chr13 15904356 15904677 -85968492 + L1MB2 LINE L1 5820 6164 -7 620 182 6 136 chr13 15904677 15904772 -85968397 - MER45A DNA AcHobo -1449 132 26 2290 91 0 0 chr13 15905575 15905860 -85967309 + AluSq SINE Alu 1 285 -28 1019 240 32 16 chr13 15905883 15906133 -85967036 + MIR SINE MIR 9 262 0 1434 233 78 18 chr13 15906544 15906930 -85966239 - MLT1I LTR MaLR 0 409 1 265 214 270 0 chr13 15907401 15907490 -85965679 - L2 LINE L2 0 3272 3160 1928 170 41 27 chr13 15908067 15908432 -85964737 + MLT1A2 LTR MaLR 1 370 -4 2130 136 3 0 chr13 15908631 15908933 -85964236 - AluSx SINE Alu -9 303 1 264 327 26 96 chr13 15910017 15910402 -85962767 - L2 LINE L2 -33 3239 2882 230 255 0 0 chr13 15913262 15913309 -85959860 - MER81 DNA DNA -36 78 32 1138 155 11 5 chr13 15914042 15914229 -85958940 + MER2 DNA MER2_type 3 190 -155 2234 109 0 10 chr13 15914229 15914533 -85958636 + AluSx SINE Alu 1 301 -11 232 211 56 42 chr13 15914602 15914673 -85958496 + MER2 DNA MER2_type 267 338 -7 2418 136 115 14 chr13 15914835 15915254 -85957915 + LOR1b LTR ERV1 1 461 0 5885 134 97 1 chr13 15915273 15916204 -85956965 + LTR28 LTR ERV1 1 1020 0 290 260 67 10 chr13 15916877 15916981 -85956188 + MIR SINE MIR 86 195 -67 837 253 5 31 chr13 15917245 15917295 -85955874 + MER5A DNA MER1_type 1 51 -138 2862 185 18 73 chr13 15917295 15917912 -85955257 + MER119 DNA MER1_type 1 583 0 837 253 5 31 chr13 15917912 15918055 -85955114 + MER5A DNA MER1_type 51 189 0 211 326 52 42 chr13 15919675 15919868 -85953301 + L2 LINE L2 2569 2763 -551 191 302 0 0 chr13 15920371 15920424 -85952745 - L2 LINE L2 -56 3257 3205 334 331 48 0 chr13 15920824 15920948 -85952221 + MIR SINE MIR 26 155 -107 225 211 39 0 chr13 15920975 15921027 -85952142 - MIR SINE MIR -50 212 159 4882 160 14 104 chr13 15921031 15923251 -85949918 - L1MB2 LINE L1 -1 6170 4166 21 0 0 0 chr13 15923708 15923729 -85949440 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr13 15923734 15923762 -85949407 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5642 93 18 8 chr13 15923762 15924969 -85948200 + SVA Other Other 52 1386 0 248 350 166 14 chr13 15925665 15925882 -85947287 - L2 LINE L2 -505 2809 2560 658 192 212 25 chr13 15926156 15926354 -85946815 - MER46A DNA MER2_type -1 235 1 * 775 149 0 0 chr13 15926242 15926356 -85946813 + MER46A DNA MER2_type 33 146 -90 343 273 36 72 chr13 15926459 15926598 -85946571 - MIR SINE MIR -73 135 2 1308 249 109 31 chr13 15926654 15927141 -85946028 + MLT1H LTR MaLR 25 549 0 258 190 35 17 chr13 15928750 15928808 -85944361 - L2 LINE L2 0 3313 3255 21 0 0 0 chr13 15928870 15928891 -85944278 + AT_rich Low_complexity Low_complexity 1 21 0 2247 96 0 0 chr13 15929113 15929443 -85943726 + AluSx SINE Alu 1 330 0 354 296 94 13 chr13 15929972 15930131 -85943038 + MER5B DNA MER1_type 7 178 0 539 134 4 15 chr13 15930316 15930568 -85942601 + AluJo SINE Alu 1 312 0 225 298 16 24 chr13 15930804 15930928 -85942241 + CT-rich Low_complexity Low_complexity 1 123 0 428 310 89 24 chr13 15931707 15931920 -85941249 - MIR SINE MIR -23 239 13 198 0 0 0 chr13 15931979 15932001 -85941168 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1704 174 3 3 chr13 15932006 15932288 -85940881 - AluJb SINE Alu -30 282 1 298 306 200 30 chr13 15932702 15932967 -85940202 - L3 LINE CR1 -555 1022 713 373 362 27 43 chr13 15932977 15933165 -85940004 + L2 LINE L2 3087 3271 -1 258 210 123 12 chr13 15933304 15933385 -85939784 + MIR SINE MIR 95 184 -78 395 321 9 0 chr13 15936234 15936343 -85936826 - MER81 DNA DNA -1 113 4 3489 174 73 24 chr13 15936666 15937398 -85935771 + LTR1B LTR ERV1 1 785 0 23 33 0 0 chr13 15939016 15939046 -85934123 + AT_rich Low_complexity Low_complexity 1 30 0 277 335 31 37 chr13 15939239 15939430 -85933739 - L2 LINE L2 -927 2387 2198 281 306 151 83 chr13 15941167 15941419 -85931750 + L2 LINE L2 3004 3272 0 645 89 0 0 chr13 15941999 15942078 -85931091 + THE1B LTR MaLR 1 79 -285 935 136 7 0 chr13 15942078 15942218 -85930951 + AluSg/x SINE Alu 166 306 -6 449 289 44 22 chr13 15942232 15942412 -85930757 - MIR SINE MIR -67 195 12 181 428 86 0 chr13 15943144 15943296 -85929873 + L2 LINE L2 3107 3271 -1 965 241 9 5 chr13 15943349 15943565 -85929604 + MER20 DNA MER1_type 1 217 -2 338 0 24 0 chr13 15944847 15944889 -85928280 + (CA)n Simple_repeat Simple_repeat 1 43 0 384 307 20 0 chr13 15945208 15945309 -85927860 + MIR SINE MIR 50 152 -110 1195 191 38 0 chr13 15945324 15945534 -85927635 - MER20 DNA MER1_type -1 218 1 192 261 29 43 chr13 15945761 15945830 -85927339 + MIR SINE MIR 158 225 -37 1454 231 139 25 chr13 15946061 15946537 -85926632 + MLT1G3 LTR MaLR 1 530 0 548 260 96 19 chr13 15948321 15948529 -85924640 + MIR SINE MIR 21 244 -18 263 254 54 54 chr13 15948987 15949117 -85924052 + L2 LINE L2 3174 3303 -10 294 325 102 41 chr13 15949353 15949648 -85923521 - L3 LINE CR1 -1072 505 193 219 308 99 0 chr13 15950529 15950620 -85922549 - L2 LINE L2 -5 3267 3168 1909 131 0 54 chr13 15950935 15951248 -85921921 + AluSx SINE Alu 1 296 -16 325 245 76 3 chr13 15951276 15951393 -85921776 + L1MA9 LINE L1 6167 6290 -4 1411 191 33 46 chr13 15951867 15952170 -85920999 - AluJo SINE Alu -13 299 1 203 42 0 0 chr13 15952955 15952979 -85920190 - L2 LINE L2 -23 3290 3267 185 362 0 0 chr13 15954657 15954726 -85918443 - L3 LINE CR1 -14 1563 1495 625 334 96 30 chr13 15954771 15955136 -85918033 - L3 LINE CR1 -209 1368 980 1572 146 47 36 chr13 15956073 15956348 -85916821 + AluJb SINE Alu 18 295 -17 413 313 87 56 chr13 15956542 15957078 -85916091 + L2 LINE L2 2691 3268 -4 3235 93 7 16 chr13 15957277 15957718 -85915451 + MLT2A1 LTR ERVL 1 437 -7 230 268 83 38 chr13 15958018 15958175 -85914994 + L1ME4a LINE L1 5873 6036 -85 2263 87 16 39 chr13 15958598 15958909 -85914260 - AluSx SINE Alu -4 308 5 230 254 45 0 chr13 15959084 15959151 -85914018 + (CATATA)n Simple_repeat Simple_repeat 5 74 0 2056 137 102 0 chr13 15959447 15959762 -85913407 + MER7A DNA MER2_type 1 345 -1 476 264 0 0 chr13 15960217 15960327 -85912842 - L2 LINE L2 -5 3308 3199 473 316 53 53 chr13 15960540 15960727 -85912442 + MIR SINE MIR 29 215 -47 471 305 63 85 chr13 15961286 15961696 -85911473 + L2 LINE L2 2867 3267 -5 2491 74 0 3 chr13 15962033 15962345 -85910824 - AluY SINE Alu 0 311 1 331 213 50 12 chr13 15962788 15962868 -85910301 - MIR SINE MIR 0 262 180 1597 167 56 24 chr13 15962897 15963184 -85909985 - AluJb SINE Alu -16 296 1 359 145 26 13 chr13 15963184 15963260 -85909909 - MIR SINE MIR -66 196 120 275 306 83 9 chr13 15963511 15963619 -85909550 + L2 LINE L2 2945 3060 -212 400 305 85 0 chr13 15963811 15963968 -85909201 + MIR3 SINE MIR 3 164 -64 465 170 32 0 chr13 15964386 15964480 -85908689 + MER5A DNA MER1_type 9 105 -84 29 84 0 0 chr13 15964718 15964789 -85908380 + AT_rich Low_complexity Low_complexity 1 71 0 5565 107 0 28 chr13 15965374 15966170 -85906999 + L1PA10 LINE L1 4536 5299 -869 2288 122 0 0 chr13 15966170 15966481 -85906688 + AluSx SINE Alu 1 311 -1 5565 107 0 28 chr13 15966481 15966946 -85906223 + L1PA10 LINE L1 5299 5776 -392 738 136 0 0 chr13 15967047 15967183 -85905986 + L1PA10 LINE L1 6045 6180 0 2233 131 0 0 chr13 15967796 15968162 -85905007 - AluSq SINE Alu 0 366 1 2108 127 13 98 chr13 15969732 15970009 -85903160 - MER7A DNA MER2_type -2693 345 109 1776 163 13 16 chr13 15970009 15970322 -85902847 + AluJb SINE Alu 1 312 0 2108 127 13 98 chr13 15970322 15970421 -85902748 - MER7A DNA MER2_type -2929 109 3 487 224 50 37 chr13 15970429 15970597 -85902572 + MIR SINE MIR 40 212 -50 249 325 42 42 chr13 15972645 15972765 -85900404 - MIR3 SINE MIR -52 156 37 198 238 0 0 chr13 15973569 15973611 -85899558 + L2 LINE L2 3271 3312 -1 190 141 35 224 chr13 15973619 15973704 -85899465 - MIR SINE MIR -70 192 124 675 277 25 34 chr13 15974671 15974909 -85898260 - MIR SINE MIR -6 256 21 22 0 0 0 chr13 15976100 15976122 -85897047 + AT_rich Low_complexity Low_complexity 1 22 0 2061 125 0 0 chr13 15976184 15976494 -85896675 + AluSx SINE Alu 1 310 0 275 207 17 0 chr13 15976757 15976815 -85896354 - MIR SINE MIR -100 162 104 438 275 22 89 chr13 15978121 15978390 -85894779 + MIR SINE MIR 1 251 -11 1477 168 17 0 chr13 15978395 15978627 -85894542 - MER46A DNA MER2_type 0 236 1 2131 166 30 0 chr13 15980382 15980755 -85892414 + MLT1B LTR MaLR 7 390 0 207 329 37 12 chr13 15980852 15980934 -85892235 - MIR3 SINE MIR -39 169 86 199 170 0 151 chr13 15981597 15981650 -85891519 - L2 LINE L2 -9 3263 3219 * 622 305 26 34 chr13 15981619 15981852 -85891317 - MIR SINE MIR -17 245 15 248 247 165 21 chr13 15984389 15984486 -85888683 + MER103 DNA DNA 22 132 -34 234 160 0 120 chr13 15984708 15984758 -85888411 - Alu SINE Alu -126 176 133 528 286 32 13 chr13 15986620 15986774 -85886395 - MIR3 SINE MIR -2 206 50 330 26 0 0 chr13 15987244 15987283 -85885886 + (TG)n Simple_repeat Simple_repeat 2 40 0 306 103 0 218 chr13 15987353 15987440 -85885729 + L1MB3 LINE L1 5423 5490 -681 2537 147 2 12 chr13 15987441 15987855 -85885314 + L1MB3 LINE L1 5774 6183 0 1962 153 0 10 chr13 15988586 15988887 -85884282 + AluJo SINE Alu 5 302 -10 457 215 146 15 chr13 15989143 15989273 -85883896 + MIR SINE MIR 6 152 -110 30 0 0 0 chr13 15989698 15989728 -85883441 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 15990558 15990579 -85882590 + AT_rich Low_complexity Low_complexity 1 21 0 204 237 0 0 chr13 15992682 15992720 -85880449 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 244 156 0 0 chr13 15992720 15992765 -85880404 - LTR66 LTR ERVL -172 438 394 440 248 22 72 chr13 15994528 15994703 -85878466 - MIR SINE MIR -63 145 18 1533 254 203 17 chr13 15994835 15995544 -85877625 + L2 LINE L2 1838 2678 -636 699 286 45 31 chr13 15995545 15995832 -85877337 + L2 LINE L2 2949 3239 -74 249 159 0 0 chr13 15995865 15995909 -85877260 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 373 273 57 11 chr13 15995977 15996065 -85877104 - MIR SINE MIR -157 105 14 4704 165 60 2 chr13 15996334 15997586 -85875583 + L1MB7 LINE L1 4865 6183 -1 275 296 74 30 chr13 15997663 15997798 -85875371 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 15997931 15998097 -85875072 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 15998716 15998848 -85874321 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 15999250 15999548 -85873621 + AluSx SINE Alu 1 299 -13 648 175 158 12 chr13 15999558 15999729 -85873440 - MIR SINE MIR 0 262 67 622 270 48 70 chr13 16001187 16001607 -85871562 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 16003075 16003096 -85870073 + AT_rich Low_complexity Low_complexity 1 21 0 1803 135 0 18 chr13 16003268 16003542 -85869627 - AluSx SINE Alu -43 269 1 22 0 0 0 chr13 16003925 16003947 -85869222 + AT_rich Low_complexity Low_complexity 1 22 0 888 183 0 23 chr13 16003966 16004141 -85869028 - FRAM SINE Alu -2 174 4 541 290 152 99 chr13 16004359 16004740 -85868429 + L2 LINE L2 2122 2481 -833 1852 159 7 16 chr13 16004740 16005049 -85868120 + AluJb SINE Alu 1 306 -6 541 290 152 99 chr13 16005049 16005436 -85867733 + L2 LINE L2 2481 2931 -383 634 234 72 6 chr13 16005524 16005691 -85867478 + MER5B DNA MER1_type 1 178 0 1082 193 244 52 chr13 16007394 16007799 -85865370 + MLT1F1 LTR MaLR 1 507 -59 1976 120 3 31 chr13 16008053 16008386 -85864783 - AluSx SINE Alu 0 325 1 2087 139 16 68 chr13 16008588 16008685 -85864484 + MER7A DNA MER2_type 1 101 -2937 1999 142 0 35 chr13 16008685 16008995 -85864174 - AluSx SINE Alu -13 299 1 2087 139 16 68 chr13 16008995 16009264 -85863905 + MER7A DNA MER2_type 101 346 0 29 60 0 0 chr13 16011661 16011711 -85861458 + GC_rich Low_complexity Low_complexity 1 50 0 314 221 21 71 chr13 16012098 16012238 -85860931 + C-rich Low_complexity Low_complexity 2 134 0 244 325 202 29 chr13 16014151 16014948 -85858221 + L2 LINE L2 1141 2075 -1239 186 197 76 30 chr13 16015040 16015106 -85858063 + MIR SINE MIR 151 219 -43 610 280 142 19 chr13 16015152 16015420 -85857749 + L2 LINE L2 3013 3313 0 192 379 9 9 chr13 16015465 16015581 -85857588 + L2 LINE L2 2358 2473 -841 185 218 129 118 chr13 16015697 16015867 -85857302 + L2 LINE L2 2912 3083 -189 29 0 0 0 chr13 16016197 16016226 -85856943 + AT_rich Low_complexity Low_complexity 1 29 0 399 261 84 25 chr13 16016375 16016578 -85856591 - L1ME4a LINE L1 -217 5904 5690 855 305 12 4 chr13 16017905 16018164 -85855005 + MIR SINE MIR 2 262 0 196 350 33 42 chr13 16018829 16018949 -85854220 + MIR SINE MIR 25 143 -65 273 321 37 0 chr13 16019569 16019650 -85853519 - MIR SINE MIR -126 136 53 883 138 15 0 chr13 16019664 16019794 -85853375 + AluSq SINE Alu 23 154 -159 7666 130 82 101 chr13 16019794 16021512 -85851657 + pTR5 LTR ERV1 747 2432 -6 1163 145 0 0 chr13 16021512 16021671 -85851498 + AluSg/x SINE Alu 138 296 -16 2201 104 0 0 chr13 16022199 16022496 -85850673 - AluY SINE Alu -14 297 1 327 167 0 0 chr13 16022698 16022752 -85850417 + Tigger2 DNA MER2_type 3 56 -2662 2320 73 3 35 chr13 16022755 16023069 -85850100 - AluY SINE Alu -7 304 1 2072 132 120 57 chr13 16023071 16023483 -85849686 + Tigger2 DNA MER2_type 2267 2708 -10 2444 108 134 8 chr13 16023483 16023863 -85849306 - MSTA LTR MaLR 0 428 1 2072 132 120 57 chr13 16023863 16023875 -85849294 + Tigger2 DNA MER2_type 2708 2718 0 2627 136 75 5 chr13 16024020 16024418 -85848751 - MSTB LTR MaLR 0 426 1 205 242 45 15 chr13 16024524 16024590 -85848579 + L2 LINE L2 3225 3292 -21 523 316 174 4 chr13 16024639 16024886 -85848283 + L2 LINE L2 3006 3294 -19 232 314 107 14 chr13 16024989 16025129 -85848040 + L2 LINE L2 749 901 -2413 282 209 93 6 chr13 16025569 16025656 -85847513 + L2 LINE L2 2890 2980 -292 367 309 57 8 chr13 16025693 16025816 -85847353 + L2 LINE L2 3184 3312 -1 779 197 23 0 chr13 16026148 16026280 -85846889 + AluJo SINE Alu 1 135 -177 23 0 0 0 chr13 16026367 16026390 -85846779 + AT_rich Low_complexity Low_complexity 1 23 0 2553 49 0 0 chr13 16026572 16026877 -85846292 + AluY SINE Alu 1 305 -6 370 210 0 0 chr13 16030301 16030363 -85842806 - L2 LINE L2 0 3313 3252 207 0 0 0 chr13 16030492 16030515 -85842654 + (CAG)n Simple_repeat Simple_repeat 1 23 0 324 231 13 39 chr13 16030544 16030622 -85842547 - L2 LINE L2 -9 3263 3188 462 200 38 9 chr13 16030968 16031073 -85842096 + MER53 DNA DNA 1 108 -81 181 292 0 0 chr13 16031765 16031813 -85841356 + L2 LINE L2 3219 3266 -6 686 217 102 6 chr13 16032000 16032166 -85841003 + MIR SINE MIR 64 245 -17 2250 108 3 10 chr13 16032572 16032886 -85840283 - AluSx SINE Alu 0 312 1 327 365 40 14 chr13 16033582 16033730 -85839439 + MIR3 SINE MIR 48 199 -9 21 0 0 0 chr13 16035375 16035396 -85837773 + AT_rich Low_complexity Low_complexity 1 21 0 5185 150 43 9 chr13 16035459 16036430 -85836739 + L1MB3 LINE L1 5175 6181 -2 193 306 159 71 chr13 16036779 16036949 -85836220 - MER5A DNA MER1_type 0 189 5 374 181 0 96 chr13 16037366 16037409 -85835760 - MER94 DNA DNA -40 94 63 2651 85 13 75 chr13 16037409 16037807 -85835362 - THE1C LTR MaLR -2 373 1 374 181 0 96 chr13 16037807 16037857 -85835312 - MER94 DNA DNA -71 63 10 382 279 0 73 chr13 16038199 16038335 -85834834 - L2 LINE L2 0 3313 3188 812 157 54 7 chr13 16038453 16038600 -85834569 + FAM SINE Alu 18 171 -14 256 253 140 43 chr13 16038716 16038902 -85834267 - L2 LINE L2 -1177 2137 1934 239 312 65 0 chr13 16039621 16039714 -85833455 - L3b LINE CR1 -97 1486 1388 2479 77 0 3 chr13 16040475 16040786 -85832383 + AluSg SINE Alu 1 310 0 2002 156 0 0 chr13 16040794 16041095 -85832074 + AluJb SINE Alu 1 301 -11 694 229 45 22 chr13 16041614 16041793 -85831376 - MIR SINE MIR -74 188 6 303 302 58 0 chr13 16041845 16041931 -85831238 - L2 LINE L2 -19 3294 3204 2135 91 0 88 chr13 16042076 16042405 -85830764 + AluSx SINE Alu 1 300 -12 241 275 47 123 chr13 16042640 16042876 -85830293 - L2 LINE L2 -209 3063 2846 248 320 46 39 chr13 16043102 16043255 -85829914 - MER103 DNA DNA -12 154 1 2255 109 3 3 chr13 16043430 16043741 -85829428 + AluSx SINE Alu 1 311 -1 283 301 48 41 chr13 16044406 16044552 -85828617 + L2 LINE L2 3117 3263 -50 668 161 0 88 chr13 16045223 16045360 -85827809 + FLAM_C SINE Alu 1 125 -8 2116 124 6 43 chr13 16045434 16045756 -85827413 + AluSx SINE Alu 1 310 -2 180 0 0 0 chr13 16047100 16047120 -85826049 + (TA)n Simple_repeat Simple_repeat 2 21 0 330 26 0 0 chr13 16047192 16047231 -85825938 + (TA)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr13 16047437 16047462 -85825707 + (A)n Simple_repeat Simple_repeat 1 25 0 2346 87 30 0 chr13 16047548 16047848 -85825321 + AluSx SINE Alu 1 309 -3 30 0 0 0 chr13 16047848 16047878 -85825291 + AT_rich Low_complexity Low_complexity 1 30 0 1430 208 31 10 chr13 16048987 16049276 -85823893 - AluJo SINE Alu -17 295 1 262 236 85 66 chr13 16049364 16049470 -85823699 - L2 LINE L2 -15 3257 3150 2237 187 52 14 chr13 16049510 16049948 -85823221 - LTR32 LTR ERVL 0 471 17 2359 95 0 7 chr13 16050924 16051230 -85821939 - AluSq SINE Alu -9 304 1 2259 113 0 0 chr13 16054671 16054964 -85818205 - AluSx SINE Alu -19 293 1 215 294 76 0 chr13 16055724 16055816 -85817353 + MIR SINE MIR 94 192 -70 188 254 36 0 chr13 16056007 16056062 -85817107 - MIR SINE MIR -119 143 87 999 211 25 5 chr13 16056548 16056752 -85816417 - MER3 DNA MER1_type -1 208 1 26 30 0 0 chr13 16057657 16057690 -85815479 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr13 16058304 16058324 -85814845 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1532 160 7 44 chr13 16058327 16058620 -85814549 - AluJo SINE Alu -25 287 6 820 176 0 0 chr13 16058643 16058768 -85814401 - AluJb SINE Alu -187 125 1 793 287 61 32 chr13 16059228 16059604 -85813565 + L1MEc LINE L1 92 478 -5918 1987 215 64 16 chr13 16059625 16060063 -85813106 + LTR40b LTR ERVL 4 462 0 486 243 36 0 chr13 16060064 16060175 -85812994 + HERVL40 LTR ERVL 1 115 -5415 1422 215 120 3 chr13 16060177 16060502 -85812667 - MLT1A1 LTR MaLR 0 365 3 719 231 143 37 chr13 16060514 16060730 -85812439 + HERVL40 LTR ERVL 114 352 -5178 1629 240 120 10 chr13 16060737 16061552 -85811617 + L1ME1 LINE L1 4920 5830 -332 1587 142 21 31 chr13 16061557 16061845 -85811324 + L1MA9 LINE L1 5750 6034 -278 473 252 18 87 chr13 16061850 16061885 -85811284 + L1ME1 LINE L1 5832 5868 -298 2362 83 0 22 chr13 16061885 16062198 -85810971 + AluY SINE Alu 1 306 -5 473 252 18 87 chr13 16062198 16062380 -85810789 + L1ME1 LINE L1 5868 6034 -132 2379 151 17 18 chr13 16062406 16062932 -85810237 - L1MA9 LINE L1 -4 6296 5673 2264 88 3 10 chr13 16062938 16063235 -85809934 - AluY SINE Alu -16 295 1 398 214 106 4 chr13 16063243 16063365 -85809804 + L1ME1 LINE L1 6050 6334 0 437 195 48 22 chr13 16063377 16063535 -85809634 + L1MC4 LINE L1 6879 7039 -956 780 306 50 55 chr13 16063790 16064248 -85808921 + LTR16B LTR ERVL 9 464 0 515 321 19 19 chr13 16064305 16064520 -85808649 - L3 LINE CR1 -754 823 609 1769 126 6 94 chr13 16064921 16065263 -85807906 + LTR1B LTR ERV1 1 312 -514 2602 143 69 7 chr13 16065397 16065858 -85807311 + LTR1B LTR ERV1 337 826 0 4704 162 60 0 chr13 16065977 16066958 -85806211 + L1MB7 LINE L1 5149 6183 -1 275 296 74 30 chr13 16067035 16067170 -85805999 + MIR3 SINE MIR 37 177 -31 491 325 66 0 chr13 16067303 16067469 -85805700 + MIR SINE MIR 35 211 -51 656 227 0 8 chr13 16068088 16068220 -85804949 + FLAM_A SINE Alu 1 131 -2 2070 121 13 10 chr13 16068622 16068920 -85804249 + AluSx SINE Alu 1 299 -13 648 190 145 10 chr13 16068930 16069129 -85804040 - MIR SINE MIR 0 262 35 622 270 48 70 chr13 16070559 16070979 -85802190 + L2 LINE L2 2845 3249 -23 21 0 0 0 chr13 16072447 16072468 -85800701 + AT_rich Low_complexity Low_complexity 1 21 0 2506 37 31 0 chr13 16073112 16073406 -85799763 + AluY SINE Alu 1 303 -8 416 314 57 23 chr13 16073953 16074128 -85799041 + MER5A DNA MER1_type 6 186 -3 243 294 171 14 chr13 16074321 16074467 -85798702 + MIR SINE MIR 79 247 -15 1942 130 7 17 chr13 16074771 16075064 -85798105 - AluJo SINE Alu -16 296 7 429 332 29 46 chr13 16075654 16075892 -85797277 + MIR SINE MIR 28 261 -1 2527 172 84 32 chr13 16076687 16077043 -85796126 - L1MA9 LINE L1 -23 6143 5807 321 26 0 0 chr13 16077043 16077081 -85796088 + (TG)n Simple_repeat Simple_repeat 1 38 0 2527 172 84 32 chr13 16077081 16077096 -85796073 - L1MA9 LINE L1 -359 5807 5794 2246 117 0 0 chr13 16077096 16077403 -85795766 - AluSx SINE Alu -5 307 1 2527 172 84 32 chr13 16077403 16077668 -85795501 - L1MA9 LINE L1 -372 5794 5477 1931 135 3 46 chr13 16078727 16079052 -85794117 - AluSp SINE Alu -2 311 1 275 227 0 30 chr13 16079139 16079205 -85793964 + L2 LINE L2 3250 3313 0 930 291 126 22 chr13 16079503 16079705 -85793464 + L2 LINE L2 2823 3003 -310 1645 226 44 14 chr13 16079705 16080068 -85793101 + MLT1A2 LTR MaLR 1 374 0 930 291 126 22 chr13 16080068 16080309 -85792860 + L2 LINE L2 3003 3312 -1 240 35 0 0 chr13 16080395 16080424 -85792745 + (TAA)n Simple_repeat Simple_repeat 3 31 0 2159 119 7 0 chr13 16080494 16080796 -85792373 + AluSx SINE Alu 1 304 -8 374 292 29 64 chr13 16081267 16081438 -85791731 + MIR3 SINE MIR 37 201 -7 188 243 271 22 chr13 16081733 16081914 -85791255 + MIR SINE MIR 8 233 -29 202 188 31 16 chr13 16082224 16082288 -85790881 + (CA)n Simple_repeat Simple_repeat 2 66 0 240 302 0 0 chr13 16082298 16082361 -85790808 + MER5A DNA MER1_type 127 189 0 242 310 90 1 chr13 16082424 16082556 -85790613 + MIR SINE MIR 6 147 -75 475 307 59 7 chr13 16083015 16083168 -85790001 + MER91A DNA MER1_type 1 161 -35 205 283 0 0 chr13 16083194 16083240 -85789929 + MER91A DNA MER1_type 151 196 0 315 49 0 0 chr13 16083353 16083394 -85789775 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 261 329 94 41 chr13 16083395 16083565 -85789604 - L2 LINE L2 -14 3258 3080 1789 175 3 10 chr13 16083857 16084160 -85789009 + AluJo SINE Alu 1 301 -11 597 103 0 0 chr13 16084275 16084353 -85788816 - MADE1 DNA Mariner -2 78 1 25 51 0 0 chr13 16084361 16084400 -85788769 + AT_rich Low_complexity Low_complexity 1 39 0 1073 203 6 0 chr13 16085189 16085366 -85787803 - MER45A DNA AcHobo 0 178 1 301 257 0 14 chr13 16085677 16085747 -85787422 - MIR3 SINE MIR -3 205 137 1935 66 0 4 chr13 16086058 16086299 -85786870 + AluY SINE Alu 71 310 -1 1062 214 13 9 chr13 16086445 16086674 -85786495 - MIR SINE MIR -21 241 12 672 129 138 0 chr13 16087190 16087306 -85785863 + FLAM_C SINE Alu 1 132 -1 1088 162 25 34 chr13 16087598 16087802 -85785367 - AluJb SINE Alu -21 291 90 1346 130 190 8 chr13 16088742 16088995 -85784174 + AluSg SINE Alu 1 299 -1 2285 109 0 0 chr13 16090637 16090940 -85782229 - AluSx SINE Alu -9 303 1 501 327 18 65 chr13 16091758 16092033 -85781136 - MIR SINE MIR 0 262 1 2812 209 58 21 chr13 16092230 16092853 -85780316 + MER82 DNA MER2_type 8 653 0 2368 172 14 2 chr13 16094008 16094445 -85778724 - L1MB2 LINE L1 -2 6169 5728 1015 293 36 38 chr13 16094571 16095070 -85778099 + L2 LINE L2 2810 3307 -6 945 288 8 4 chr13 16095069 16095312 -85777857 - MIR SINE MIR -13 249 6 * 952 103 7 0 chr13 16097521 16097666 -85775503 - L1MC1 LINE L1 -361 5972 5827 2931 232 82 33 chr13 16097670 16099378 -85773791 + L1MD1 LINE L1 1838 3632 -2908 * 4135 157 53 17 chr13 16099347 16099506 -85773663 + L1MD1 LINE L1 5522 5674 -2528 189 0 0 0 chr13 16099506 16099527 -85773642 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 4135 157 53 17 chr13 16099527 16099613 -85773556 + L1MD1 LINE L1 5674 5755 -2447 2139 137 0 3 chr13 16099613 16099926 -85773243 + AluSx SINE Alu 1 312 0 4135 157 53 17 chr13 16099926 16100681 -85772488 + L1MD1 LINE L1 5755 8147 -55 2441 42 0 0 chr13 16100951 16101258 -85771911 + AluY SINE Alu 2 308 0 202 288 0 45 chr13 16101985 16102051 -85771118 - L2 LINE L2 0 3313 3251 2504 202 29 59 chr13 16102433 16103815 -85769354 + L1MB8 LINE L1 4856 6178 0 28338 108 10 9 chr13 16103834 16108039 -85765130 + L1P LINE L1 11 4219 -1927 10256 73 0 0 chr13 16108191 16110333 -85762836 + L1PA6 LINE L1 4010 6154 0 230 336 96 0 chr13 16110397 16110501 -85762668 + MIR SINE MIR 20 133 -129 1076 296 69 17 chr13 16111677 16112139 -85761030 + MER20B DNA MER1_type 1 486 -297 524 192 130 11 chr13 16112784 16112961 -85760208 + MER20B DNA MER1_type 522 719 -64 424 284 73 65 chr13 16113287 16113525 -85759644 - MIR SINE MIR 0 262 21 378 209 0 0 chr13 16113813 16113880 -85759289 + MER33 DNA MER1_type 2 68 -256 2478 67 3 0 chr13 16113900 16114200 -85758969 + AluSp SINE Alu 1 301 -12 2907 174 25 3 chr13 16114202 16114884 -85758285 + L1MA4 LINE L1 4789 5484 -745 * 3841 88 6 37 chr13 16114879 16115540 -85757629 + L1MA1 LINE L1 5137 5785 -517 595 54 0 3 chr13 16115541 16115763 -85757406 + AluY SINE Alu 1 295 -17 3199 88 10 83 chr13 16115765 16116164 -85757005 + L1MA1 LINE L1 5769 6115 -187 2422 46 0 0 chr13 16116164 16116445 -85756724 - AluY SINE Alu -30 281 1 3199 88 10 83 chr13 16116445 16116621 -85756548 + L1MA1 LINE L1 6115 6302 0 4169 155 27 10 chr13 16116637 16117404 -85755765 + L1MA4 LINE L1 5477 6256 -44 1077 139 71 52 chr13 16117464 16117731 -85755438 + MER33 DNA MER1_type 53 324 0 298 298 58 25 chr13 16117879 16118000 -85755169 + MIR SINE MIR 67 191 -71 182 263 221 0 chr13 16118004 16118099 -85755070 - L2 LINE L2 -1 3312 3197 2305 119 0 0 chr13 16120299 16120610 -85752559 + AluSx SINE Alu 1 311 -1 265 278 56 74 chr13 16120659 16120821 -85752348 + MIR SINE MIR 91 249 -13 347 262 24 0 chr13 16120989 16121073 -85752096 - L2 LINE L2 -1 3271 3186 566 51 0 13 chr13 16121094 16121173 -85751996 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 267 288 54 45 chr13 16121929 16122040 -85751129 + L2 LINE L2 3198 3309 -4 1970 183 91 35 chr13 16123237 16123701 -85749468 + LTR2B LTR ERV1 1 490 0 1656 163 27 14 chr13 16126221 16126515 -85746654 + AluJb SINE Alu 1 298 -14 879 284 93 99 chr13 16126577 16127006 -85746163 + L2 LINE L2 1862 2292 -1022 846 123 7 43 chr13 16127006 16127144 -85746025 - FLAM_C SINE Alu 0 133 1 879 284 93 99 chr13 16127144 16127632 -85745537 + L2 LINE L2 2292 2773 -541 334 225 56 0 chr13 16127681 16127752 -85745417 + MIR SINE MIR 78 152 -56 25 0 0 0 chr13 16128576 16128601 -85744568 + AT_rich Low_complexity Low_complexity 1 25 0 994 150 14 59 chr13 16129159 16129325 -85743844 + L1MB3 LINE L1 5974 6129 -54 2366 78 3 0 chr13 16129325 16129621 -85743548 + AluY SINE Alu 1 297 -14 994 150 14 59 chr13 16129621 16129674 -85743495 + L1MB3 LINE L1 6129 6183 0 2289 103 0 16 chr13 16129832 16130142 -85743027 + AluSg SINE Alu 1 305 -5 1697 175 3 14 chr13 16130712 16131003 -85742166 + AluJb SINE Alu 1 288 -24 2020 158 60 26 chr13 16131789 16132207 -85740962 - MSTB1 LTR MaLR 0 432 1 950 111 53 5 chr13 16134288 16134478 -85738691 - L1MA6 LINE L1 -4 6296 6098 7472 160 35 11 chr13 16134480 16136775 -85736394 - L1MA6 LINE L1 -285 6015 3672 224 309 59 70 chr13 16136934 16137098 -85736071 - L2 LINE L2 -212 3060 2899 1730 177 10 13 chr13 16137098 16137408 -85735761 - AluJo SINE Alu -3 309 1 224 309 59 70 chr13 16137408 16137499 -85735670 - L2 LINE L2 -373 2899 2808 212 244 24 61 chr13 16138084 16138166 -85735003 - L2 LINE L2 -1355 1959 1881 372 352 56 11 chr13 16138778 16138957 -85734212 + MIR SINE MIR 1 187 -75 874 288 136 0 chr13 16140375 16140691 -85732478 + LTR16B LTR ERVL 106 464 0 215 378 0 54 chr13 16140735 16140846 -85732323 - MIR SINE MIR -69 139 35 226 282 14 14 chr13 16140851 16140922 -85732247 - L2 LINE L2 -2 3311 3241 382 355 18 0 chr13 16140931 16141100 -85732069 - L2 LINE L2 -568 2746 2575 187 258 81 0 chr13 16141157 16141219 -85731950 - L2 LINE L2 -31 3282 3216 397 223 32 0 chr13 16141785 16141879 -85731290 + MER58B DNA MER1_type 20 116 -225 1981 109 25 0 chr13 16141880 16142000 -85731169 + AluSc SINE Alu 1 116 -197 180 0 0 0 chr13 16142000 16142020 -85731149 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1981 109 25 0 chr13 16142020 16142205 -85730964 + AluSc SINE Alu 116 313 0 1055 140 52 68 chr13 16142420 16142481 -85730688 - MLT1B LTR MaLR 0 390 330 2222 109 0 0 chr13 16142481 16142790 -85730379 - AluSx SINE Alu 0 309 1 1055 140 52 68 chr13 16142790 16142976 -85730193 - MLT1B LTR MaLR -60 330 145 962 167 69 0 chr13 16142976 16143150 -85730019 + MLT1A1 LTR MaLR 109 294 -71 503 216 0 0 chr13 16143187 16143284 -85729885 + MER58B DNA MER1_type 239 335 -6 405 331 116 8 chr13 16143452 16143694 -85729475 + HAL1b LINE L1 110 377 -971 484 306 35 75 chr13 16143698 16143850 -85729319 + HAL1b LINE L1 437 593 -755 1949 174 46 3 chr13 16143850 16144200 -85728969 - MLT1A1 LTR MaLR 0 365 1 484 306 35 75 chr13 16144200 16144554 -85728615 + HAL1b LINE L1 593 923 -425 1005 82 0 0 chr13 16144564 16144699 -85728470 - AluY SINE Alu -3 308 174 364 204 142 28 chr13 16144700 16144876 -85728293 + HAL1b LINE L1 910 1105 -243 214 296 0 0 chr13 16144905 16144949 -85728220 - MER91A DNA MER1_type 0 196 153 222 283 83 0 chr13 16145048 16145108 -85728061 - MER91A DNA MER1_type -114 82 18 1205 106 0 12 chr13 16145116 16145276 -85727893 - AluSg SINE Alu -8 304 147 436 123 0 0 chr13 16145279 16145344 -85727825 - AluSg SINE Alu -253 65 1 1723 249 43 28 chr13 16145391 16145970 -85727199 - L1ME1 LINE L1 -7 6553 5966 662 277 88 22 chr13 16145967 16146475 -85726694 - L1ME1 LINE L1 -4517 2023 1546 * 2146 103 3 20 chr13 16146509 16146810 -85726359 + AluSc SINE Alu 3 298 -11 1319 235 15 18 chr13 16147165 16147559 -85725610 + L1ME1 LINE L1 5774 6161 -5 462 254 37 15 chr13 16147651 16147785 -85725384 - MIR SINE MIR -19 243 107 1794 176 33 43 chr13 16148695 16149252 -85723917 - MLT2A2 LTR ERVL 0 554 1 2722 191 4 4 chr13 16149395 16149881 -85723288 - MER66B LTR ERV1 0 486 1 1997 142 10 0 chr13 16150033 16150322 -85722847 + AluSq SINE Alu 1 292 -21 312 91 0 0 chr13 16150322 16150366 -85722803 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 435 236 22 22 chr13 16150403 16150585 -85722584 + L1MC5 LINE L1 7725 7906 -55 198 296 244 61 chr13 16150844 16150869 -85722300 - L2 LINE L2 -1 3271 3252 1827 136 50 4 chr13 16150869 16151149 -85722020 + AluSx SINE Alu 1 293 -19 198 296 244 61 chr13 16151149 16151238 -85721931 - L2 LINE L2 -20 3252 3136 403 300 198 55 chr13 16151289 16151497 -85721672 + L2 LINE L2 2437 2614 -700 2462 62 10 0 chr13 16151497 16151803 -85721366 - AluY SINE Alu -2 309 1 403 300 198 55 chr13 16151803 16151994 -85721175 + L2 LINE L2 2614 2893 -421 21 71 0 0 chr13 16152205 16152247 -85720922 + AT_rich Low_complexity Low_complexity 1 42 0 366 286 40 16 chr13 16152315 16152441 -85720728 + MIR SINE MIR 107 235 -27 386 266 42 10 chr13 16152621 16152813 -85720356 - L1MC5 LINE L1 -40 7921 7724 2663 106 0 92 chr13 16153301 16153841 -85719328 - MER1A DNA MER1_type -39 494 1 395 226 108 0 chr13 16153990 16154092 -85719077 - MIR SINE MIR -20 242 130 188 360 65 49 chr13 16154313 16154638 -85718531 + L2 LINE L2 2175 2504 -810 1646 198 9 75 chr13 16154663 16155087 -85718082 + MSTD LTR MaLR 1 396 0 604 308 31 18 chr13 16155395 16155619 -85717550 - MIR SINE MIR -24 238 12 190 333 74 0 chr13 16155822 16155903 -85717266 - L2 LINE L2 -5 3267 3181 245 295 58 58 chr13 16155953 16156109 -85717060 - MIR SINE MIR -75 187 32 198 0 0 0 chr13 16156185 16156207 -85716962 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 6936 45 2 0 chr13 16156216 16157453 -85715716 - L1PA7 LINE L1 -7 6147 4926 21 0 0 0 chr13 16158272 16158293 -85714876 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 16158457 16158492 -85714677 + AT_rich Low_complexity Low_complexity 1 35 0 446 118 0 0 chr13 16158492 16158568 -85714601 - L1MA2 LINE L1 0 6304 6229 26 0 0 0 chr13 16158595 16158621 -85714548 + AT_rich Low_complexity Low_complexity 1 26 0 655 210 12 119 chr13 16158687 16158930 -85714239 - MER20 DNA MER1_type -2 217 1 252 234 125 0 chr13 16159402 16159466 -85713703 - L2 LINE L2 0 3272 3201 323 294 59 7 chr13 16159561 16159697 -85713472 - MIR SINE MIR -71 191 49 541 167 0 0 chr13 16159703 16159793 -85713376 - LOR1b LTR ERV1 0 461 372 470 213 37 0 chr13 16159805 16159913 -85713256 + LOR1b LTR ERV1 348 459 -2 9720 140 26 13 chr13 16159915 16161635 -85711534 + LOR1a-int LTR ERV1 1 1743 -6377 7779 132 40 22 chr13 16161636 16161978 -85711191 + LOR1a-int LTR ERV1 2621 2955 -3803 2379 97 3 3 chr13 16161978 16162287 -85710882 + AluSc SINE Alu 1 309 0 7779 132 40 22 chr13 16162287 16163429 -85709740 + LOR1a-int LTR ERV1 2955 6166 -592 1521 153 8 0 chr13 16163610 16163858 -85709311 + LOR1a-int LTR ERV1 6830 7079 -1041 900 198 12 0 chr13 16163881 16164048 -85709121 + MER49 LTR ERV1 1 169 -754 682 112 0 19 chr13 16164048 16164155 -85709014 + LOR1a-int LTR ERV1 7995 8099 -21 2734 128 25 73 chr13 16164168 16164690 -85708479 + LOR1a LTR ERV1 1 497 0 444 244 87 17 chr13 16164783 16165013 -85708156 - Charlie2 DNA MER1_type -6 2856 2611 1955 176 0 0 chr13 16165029 16165336 -85707833 + AluJb SINE Alu 1 307 -5 1437 248 49 65 chr13 16165391 16166015 -85707154 + L1MC5 LINE L1 5255 5868 -1940 2873 117 26 7 chr13 16166015 16166435 -85706734 + MSTA LTR MaLR 1 428 0 1437 248 49 65 chr13 16166435 16166504 -85706665 + L1MC5 LINE L1 5868 5937 -1871 21 57 0 0 chr13 16166706 16166741 -85706428 + AT_rich Low_complexity Low_complexity 1 35 0 1683 225 53 81 chr13 16166951 16167998 -85705171 + L1MC5 LINE L1 6476 7492 -469 313 216 29 29 chr13 16168049 16168151 -85705018 + L1MC5 LINE L1 7481 7582 -379 1806 60 0 21 chr13 16168174 16168408 -85704761 + AluY SINE Alu 82 310 -1 192 77 0 0 chr13 16168526 16168552 -85704617 + (A)n Simple_repeat Simple_repeat 1 26 0 822 223 31 21 chr13 16168562 16168853 -85704316 + L1MC5 LINE L1 7620 7913 -48 391 208 69 82 chr13 16168934 16169237 -85703932 - Charlie2 DNA MER1_type -322 2540 2242 2260 164 40 16 chr13 16169966 16170416 -85702753 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr13 16170521 16170543 -85702626 + AT_rich Low_complexity Low_complexity 1 22 0 2997 167 43 53 chr13 16170587 16171306 -85701863 + LTR8A LTR ERV1 1 712 -15 1422 148 109 0 chr13 16172854 16173137 -85700032 - MER44D DNA MER2_type -25 584 1 641 245 50 0 chr13 16173602 16173761 -85699408 + MIR SINE MIR 71 237 -25 228 290 0 0 chr13 16173774 16173836 -85699333 + (TTG)n Simple_repeat Simple_repeat 3 64 0 348 319 163 43 chr13 16174385 16175037 -85698132 + L2 LINE L2 1837 2566 -748 298 329 77 21 chr13 16175198 16175341 -85697828 + L2 LINE L2 2911 3061 -211 192 77 0 0 chr13 16178179 16178205 -85694964 + (CA)n Simple_repeat Simple_repeat 1 26 0 306 264 298 6 chr13 16178683 16178849 -85694320 + MIR SINE MIR 1 223 -39 2365 83 0 13 chr13 16178849 16179161 -85694008 + AluY SINE Alu 1 308 -3 306 264 298 6 chr13 16179161 16179172 -85693997 + MIR SINE MIR 223 230 -32 2142 107 0 7 chr13 16179172 16179462 -85693707 + AluY SINE Alu 1 288 -23 1258 112 12 0 chr13 16179463 16179633 -85693536 + AluSg/x SINE Alu 133 304 -8 428 200 33 33 chr13 16179881 16180001 -85693168 + MER94 DNA DNA 15 134 0 476 305 51 13 chr13 16180581 16180787 -85692382 - MIR SINE MIR -44 218 7 667 56 0 11 chr13 16181555 16181645 -85691524 - MER4E LTR ERV1 0 766 678 616 116 42 0 chr13 16181695 16181790 -85691379 - MER4B LTR ERV1 -85 525 427 2533 110 6 88 chr13 16181857 16182356 -85690813 - MER4B LTR ERV1 -152 458 1 503 296 140 37 chr13 16182489 16182840 -85690329 - L2 LINE L2 0 3313 2927 309 328 17 17 chr13 16182836 16182952 -85690217 - L2 LINE L2 -25 3247 3132 * 2204 165 15 22 chr13 16183071 16183477 -85689692 + MER57A LTR ERV1 1 403 0 2236 118 25 3 chr13 16184377 16184742 -85688427 - MER39B LTR ERV1 -23 630 258 696 182 0 47 chr13 16184743 16184891 -85688278 - FLAM_C SINE Alu -2 141 1 1824 98 8 0 chr13 16184891 16185157 -85688012 - MER39B LTR ERV1 -385 268 1 321 256 83 38 chr13 16185166 16185299 -85687870 - MIR SINE MIR -14 248 110 299 213 43 64 chr13 16186156 16186250 -85686919 - MIR SINE MIR -150 112 21 21 0 0 0 chr13 16186345 16186366 -85686803 + AT_rich Low_complexity Low_complexity 1 21 0 399 41 0 0 chr13 16186662 16186711 -85686458 + (CA)n Simple_repeat Simple_repeat 2 50 0 452 288 29 14 chr13 16187680 16187819 -85685350 + MIR SINE MIR 16 156 -106 23 40 0 0 chr13 16188289 16188314 -85684855 + AT_rich Low_complexity Low_complexity 1 25 0 822 280 107 20 chr13 16188663 16189145 -85684024 + MLT1H LTR MaLR 1 537 -12 24 77 0 0 chr13 16190472 16190524 -85682645 + AT_rich Low_complexity Low_complexity 1 52 0 26 0 0 0 chr13 16190656 16190682 -85682487 + AT_rich Low_complexity Low_complexity 1 26 0 224 194 32 0 chr13 16191500 16191562 -85681607 + (TAAA)n Simple_repeat Simple_repeat 4 67 0 389 265 82 14 chr13 16191860 16192007 -85681162 - MIR SINE MIR -94 168 12 323 243 27 14 chr13 16192031 16192105 -85681064 + MIR SINE MIR 40 114 -148 338 127 14 42 chr13 16192500 16192572 -85680597 + L1M3 LINE L1 5385 5454 -849 2199 122 51 25 chr13 16192572 16192964 -85680205 + MSTA LTR MaLR 27 428 0 1504 168 25 38 chr13 16192964 16193279 -85679890 + L1M3 LINE L1 5463 5773 -410 398 249 249 35 chr13 16194780 16194884 -85678285 + MIR SINE MIR 8 88 -174 2423 76 0 7 chr13 16194884 16195185 -85677984 - AluY SINE Alu -2 309 11 398 249 249 35 chr13 16195185 16195281 -85677888 + MIR SINE MIR 88 251 -11 5102 166 44 18 chr13 16196398 16197475 -85675694 - L1MC2 LINE L1 -13 6331 5225 23 0 0 0 chr13 16197475 16197498 -85675671 + AT_rich Low_complexity Low_complexity 1 23 0 5445 148 22 6 chr13 16197500 16199181 -85673988 - L1PB3 LINE L1 -6 6148 4441 1569 213 56 2 chr13 16199180 16199589 -85673580 - L1MC2 LINE L1 -905 5241 4811 * 1967 136 0 36 chr13 16200600 16200902 -85672267 + AluJo SINE Alu 1 291 -21 2269 157 56 7 chr13 16201259 16201691 -85671478 - MSTB2 LTR MaLR -4 453 1 2190 123 3 3 chr13 16201918 16202220 -85670949 + AluSg SINE Alu 1 302 -8 1741 166 0 21 chr13 16202378 16202667 -85670502 - AluJb SINE Alu -16 296 14 22 0 0 0 chr13 16203187 16203209 -85669960 + AT_rich Low_complexity Low_complexity 1 22 0 820 196 55 0 chr13 16203466 16203629 -85669540 + MER2 DNA MER2_type 2 173 -172 329 169 70 28 chr13 16203717 16203788 -85669381 + MER2 DNA MER2_type 272 345 0 2277 131 37 3 chr13 16203871 16204254 -85668915 - MER57A LTR ERV1 -6 397 2 644 165 0 0 chr13 16206276 16206373 -85666796 - AluJ/FLAM SINE Alu -213 99 3 195 114 0 0 chr13 16206447 16206482 -85666687 - MER5C DNA MER1_type -57 267 233 441 272 53 0 chr13 16206526 16206640 -85666529 - MER5C DNA MER1_type -204 120 1 401 272 110 13 chr13 16206640 16206868 -85666301 - L1MC2 LINE L1 -2735 3411 3162 756 284 64 21 chr13 16206889 16207010 -85666159 + MIR SINE MIR 17 131 -131 2221 128 0 3 chr13 16207010 16207314 -85665855 + AluSq SINE Alu 1 303 -10 756 284 64 21 chr13 16207314 16207428 -85665741 + MIR SINE MIR 131 262 0 507 263 148 5 chr13 16207432 16207649 -85665520 - L1MC2 LINE L1 -2986 3160 2913 1029 210 25 52 chr13 16207654 16208091 -85665078 - MLT1D LTR MaLR 0 505 10 200 135 27 0 chr13 16208207 16208244 -85664925 + A-rich Low_complexity Low_complexity 1 38 0 2261 107 3 0 chr13 16208288 16208588 -85664581 - AluY SINE Alu -10 301 1 362 301 94 27 chr13 16208618 16208913 -85664256 + L1ME LINE L1 4147 4421 -1725 1739 185 11 0 chr13 16208913 16209199 -85663970 - AluJo SINE Alu -23 289 1 362 301 94 27 chr13 16209199 16209766 -85663403 + L1ME LINE L1 4421 5067 -1079 2530 33 0 20 chr13 16209797 16210097 -85663072 + AluY SINE Alu 1 294 -17 1181 276 68 43 chr13 16211951 16212881 -85660288 + L1MC4 LINE L1 7090 8042 0 259 289 56 0 chr13 16212990 16213080 -85660089 + MIR SINE MIR 59 153 -109 364 295 133 20 chr13 16213530 16213832 -85659337 + L1ME LINE L1 5302 5637 -529 2469 71 0 7 chr13 16213833 16214143 -85659026 - AluY SINE Alu -3 308 1 180 288 51 34 chr13 16216331 16216390 -85656779 - L2 LINE L2 -7 3265 3206 306 260 14 0 chr13 16216490 16216563 -85656606 - MER91B DNA MER1_type 0 190 117 299 215 139 90 chr13 16216565 16216709 -85656460 - MER91B DNA MER1_type -16 174 24 261 303 156 8 chr13 16217463 16217585 -85655584 - MIR SINE MIR -56 206 67 234 0 0 0 chr13 16218546 16218572 -85654597 + (TG)n Simple_repeat Simple_repeat 2 27 0 695 333 148 30 chr13 16218731 16219677 -85653492 - L2 LINE L2 -13 3300 2236 189 262 0 0 chr13 16220381 16220442 -85652727 + GA-rich Low_complexity Low_complexity 2 62 0 * 308 205 25 33 chr13 16220439 16220561 -85652608 + G-rich Low_complexity Low_complexity 5 125 0 207 167 0 0 chr13 16220553 16220595 -85652574 + GA-rich Low_complexity Low_complexity 4 45 0 * 291 367 24 101 chr13 16220901 16221239 -85651930 - L2 LINE L2 -1 3271 2960 258 281 110 0 chr13 16221495 16221577 -85651592 + MIR SINE MIR 166 256 -6 313 283 141 13 chr13 16221749 16221986 -85651183 - MLT1E2 LTR MaLR -369 257 6 406 325 154 31 chr13 16221993 16222375 -85650794 - L2 LINE L2 -15 3298 2870 522 223 97 34 chr13 16222540 16222715 -85650454 - L2 LINE L2 -11 3302 3117 2977 161 40 0 chr13 16222996 16223575 -85649594 - L1MB3 LINE L1 -10 6173 5572 5375 125 35 19 chr13 16224906 16225893 -85647276 - L1MA4 LINE L1 -8 6292 5290 293 361 83 0 chr13 16226346 16226479 -85646690 - MIR3 SINE MIR -62 146 3 2244 93 0 3 chr13 16226843 16227134 -85646035 - AluY SINE Alu -11 300 11 2213 162 28 45 chr13 16227347 16227374 -85645795 + LOR1b LTR ERV1 1 27 -434 1736 168 42 30 chr13 16227374 16227707 -85645462 + MER1B DNA MER1_type 1 337 0 2213 162 28 45 chr13 16227707 16228148 -85645021 + LOR1b LTR ERV1 27 461 0 424 289 105 76 chr13 16228184 16229090 -85644079 + L1MEd LINE L1 326 1257 -4862 328 270 143 0 chr13 16229074 16229263 -85643906 + HAL1 LINE L1 1351 1566 -941 * 2120 140 0 19 chr13 16229263 16229578 -85643591 + AluSx SINE Alu 1 309 -3 421 132 44 0 chr13 16229708 16229776 -85643393 + AluJ/FLAM SINE Alu 1 71 -241 230 310 108 19 chr13 16230457 16230615 -85642554 + MIR SINE MIR 12 183 -79 316 298 64 64 chr13 16231795 16231966 -85641203 - MIR SINE MIR -70 192 22 396 0 0 0 chr13 16232531 16232575 -85640594 + (TG)n Simple_repeat Simple_repeat 2 45 0 298 145 58 0 chr13 16232675 16232744 -85640425 + AluSc SINE Alu 215 287 -12 1678 171 14 10 chr13 16233254 16233546 -85639623 - AluJo SINE Alu -19 293 1 252 281 56 11 chr13 16233567 16233656 -85639513 - L3b LINE CR1 -340 1243 1151 239 208 14 83 chr13 16234504 16234576 -85638593 + MIR3 SINE MIR 101 167 -41 220 326 96 30 chr13 16235433 16235569 -85637600 - MIR3 SINE MIR -73 135 14 207 167 0 0 chr13 16235704 16235746 -85637423 + GA-rich Low_complexity Low_complexity 3 44 0 346 256 67 110 chr13 16236258 16236474 -85636695 - MIR SINE MIR -8 254 44 180 47 47 47 chr13 16236507 16236550 -85636619 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 318 87 0 0 chr13 16236665 16236711 -85636458 + (CA)n Simple_repeat Simple_repeat 1 46 0 417 20 0 0 chr13 16236965 16237015 -85636154 + (TG)n Simple_repeat Simple_repeat 2 51 0 679 137 77 11 chr13 16237447 16237629 -85635540 + Charlie5 DNA MER1_type 2387 2580 -32 225 113 75 57 chr13 16238126 16238179 -85634990 + MER113 DNA MER1_type? 350 403 -118 219 200 27 13 chr13 16238381 16238456 -85634713 + (CTCA)n Simple_repeat Simple_repeat 4 79 0 234 289 0 62 chr13 16238460 16238557 -85634612 - L2 LINE L2 -2 3270 3180 8053 44 0 1 chr13 16238684 16239684 -85633485 - L1P LINE L1 -2789 3357 2359 4026 38 0 4 chr13 16239684 16240160 -85633009 + L1PA5 LINE L1 5385 5858 -296 2618 39 0 0 chr13 16240929 16241236 -85631933 - AluYa5 SINE Alu -4 307 1 1710 189 16 70 chr13 16241410 16241796 -85631373 + MLT1A1 LTR MaLR 1 365 0 511 264 16 0 chr13 16242150 16242275 -85630894 - MER94 DNA DNA 0 134 8 207 265 0 0 chr13 16242330 16242379 -85630790 + L2 LINE L2 3186 3234 -38 948 232 65 90 chr13 16242401 16242897 -85630272 + MLT1H1 LTR MaLR 19 554 -1 385 260 29 0 chr13 16243457 16243561 -85629608 + MIR SINE MIR 91 197 -65 4437 215 40 14 chr13 16243642 16245238 -85627931 + L1MC4 LINE L1 4366 5403 -743 2444 148 63 5 chr13 16244938 16245385 -85627784 + L1MB7 LINE L1 5695 6167 -17 * 289 325 56 25 chr13 16246336 16246496 -85626673 + L2 LINE L2 3145 3309 -4 376 259 110 59 chr13 16246768 16247023 -85626146 + L2 LINE L2 3045 3312 -1 249 271 0 29 chr13 16247023 16247093 -85626076 + GA-rich Low_complexity Low_complexity 4 71 0 2408 77 7 3 chr13 16247734 16248044 -85625125 + AluY SINE Alu 1 311 0 472 292 9 0 chr13 16248076 16248189 -85624980 - L2 LINE L2 -4 3268 3155 3272 132 20 4 chr13 16248641 16249135 -85624034 - L1MB3 LINE L1 -1 6182 5681 4016 173 55 21 chr13 16249381 16249961 -85623208 + MER21B LTR ERV1 1 612 -251 2387 87 7 16 chr13 16249961 16250271 -85622898 - AluSx SINE Alu -5 307 1 4016 173 55 21 chr13 16250271 16250414 -85622755 + MER21B LTR ERV1 612 749 -114 198 0 0 0 chr13 16250415 16250437 -85622732 + (CTTG)n Simple_repeat Simple_repeat 1 22 0 1713 181 3 13 chr13 16251344 16251642 -85621527 - AluJo SINE Alu -17 295 1 777 190 38 22 chr13 16251680 16251864 -85621305 + MER53 DNA DNA 1 187 -2 2148 104 82 25 chr13 16252223 16252578 -85620591 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 16252662 16252697 -85620472 + AT_rich Low_complexity Low_complexity 1 35 0 2553 51 0 0 chr13 16252739 16253035 -85620134 + AluY SINE Alu 1 296 -15 390 324 49 49 chr13 16253589 16253836 -85619333 + L1ME4a LINE L1 5347 5593 -528 949 178 0 41 chr13 16253842 16254011 -85619158 - AluJb SINE Alu -17 295 134 311 283 58 17 chr13 16254348 16254468 -85618701 + L1ME4a LINE L1 5963 6087 -34 2198 99 0 0 chr13 16255392 16255684 -85617485 - AluY SINE Alu -19 292 1 2351 93 0 7 chr13 16257043 16257353 -85615816 - AluY SINE Alu -3 308 1 2091 109 3 10 chr13 16257355 16257649 -85615520 - AluSx SINE Alu -20 292 1 25 0 0 0 chr13 16258067 16258092 -85615077 + AT_rich Low_complexity Low_complexity 1 25 0 2483 73 7 0 chr13 16258933 16259236 -85613933 - AluSc SINE Alu -2 307 3 186 213 0 21 chr13 16259690 16259737 -85613432 + MIR SINE MIR 60 105 -157 1750 200 59 75 chr13 16260208 16260768 -85612401 - L1ME2 LINE L1 -323 5910 5360 274 256 102 47 chr13 16261029 16261244 -85611925 - L1ME2 LINE L1 -916 5299 5073 1111 123 7 0 chr13 16261405 16261584 -85611585 - AluSg/x SINE Alu 0 305 126 2428 80 0 0 chr13 16261586 16261888 -85611281 - AluSc SINE Alu -7 302 1 1870 89 89 7 chr13 16261888 16262159 -85611010 - AluY SINE Alu -5 306 14 1903 211 67 125 chr13 16262162 16262430 -85610739 - L1ME2 LINE L1 -2343 3872 3590 2341 85 3 0 chr13 16262430 16262725 -85610444 + AluSq SINE Alu 8 303 -10 1903 211 67 125 chr13 16262725 16262826 -85610343 - L1ME2 LINE L1 -2625 3590 3485 2465 69 0 10 chr13 16262826 16263132 -85610037 - AluY SINE Alu -8 303 1 1903 211 67 125 chr13 16263132 16263945 -85609224 - L1ME2 LINE L1 -2730 3485 2776 2327 115 0 0 chr13 16263945 16264257 -85608912 + AluSx SINE Alu 1 312 0 1903 211 67 125 chr13 16264257 16264435 -85608734 - L1ME2 LINE L1 -3439 2776 2589 1796 152 28 3 chr13 16264457 16264746 -85608423 - AluSq SINE Alu -17 296 1 369 228 16 93 chr13 16264754 16265000 -85608169 - L1ME2 LINE L1 -4130 2266 2040 368 380 22 0 chr13 16265630 16265814 -85607355 - L1ME2 LINE L1 -6030 366 179 1143 179 85 123 chr13 16265969 16266359 -85606810 + MER4C LTR ERV1 91 465 0 223 305 60 131 chr13 16266670 16267106 -85606063 + L2 LINE L2 2851 3255 -17 205 288 93 42 chr13 16267915 16268033 -85605136 + MIR SINE MIR 16 139 -69 2158 178 37 16 chr13 16268883 16269311 -85603858 + LTR23 LTR ERV1 1 437 0 204 156 0 188 chr13 16269592 16269656 -85603513 - L2 LINE L2 0 3272 3221 188 93 47 47 chr13 16269785 16269828 -85603341 + L3 LINE CR1 1060 1102 -475 22 35 0 0 chr13 16271049 16271078 -85602091 + AT_rich Low_complexity Low_complexity 1 29 0 2416 78 7 3 chr13 16271345 16271651 -85601518 - AluY SINE Alu -4 307 1 1852 161 0 3 chr13 16271653 16271944 -85601225 - AluJb SINE Alu -20 292 3 2643 170 27 29 chr13 16272050 16272574 -85600595 - L1MC2 LINE L1 -2 6342 5820 3330 165 185 31 chr13 16272577 16273890 -85599279 - pTR5 LTR ERV1 0 2438 747 1433 128 60 4 chr13 16273890 16274125 -85599044 - L1MC2 LINE L1 -518 5826 5579 788 250 72 119 chr13 16274342 16274917 -85598252 + MLT1H1 LTR MaLR 1 555 0 2369 74 0 10 chr13 16275038 16275337 -85597832 - AluY SINE Alu -15 296 1 33 0 0 0 chr13 16275339 16275372 -85597797 + AT_rich Low_complexity Low_complexity 1 33 0 269 293 114 32 chr13 16275922 16276045 -85597124 - L2 LINE L2 -4 3268 3136 1903 133 14 7 chr13 16276929 16277208 -85595961 - AluSx SINE Alu -19 293 13 585 311 10 5 chr13 16277274 16277467 -85595702 + Charlie8 DNA MER1_type 1 194 -2223 765 85 57 0 chr13 16277701 16277807 -85595362 + AluSg/x SINE Alu 197 308 -2 2262 107 10 0 chr13 16281514 16281822 -85591347 + AluSx SINE Alu 1 311 -1 2075 119 14 0 chr13 16281837 16282123 -85591046 + AluSc SINE Alu 1 290 -19 245 318 88 36 chr13 16282693 16282885 -85590284 + L3 LINE CR1 248 449 -1128 5587 43 5 0 chr13 16283139 16283772 -85589397 - L1PA8 LINE L1 -10 6162 5527 1499 194 11 0 chr13 16283900 16284207 -85588962 - AluJo SINE Alu 0 326 17 1204 311 89 16 chr13 16284752 16285257 -85587912 + L3 LINE CR1 400 941 -636 385 316 53 8 chr13 16285303 16285436 -85587733 - L3 LINE CR1 -1028 549 411 2389 105 0 0 chr13 16285840 16286146 -85587023 + AluSg SINE Alu 1 306 -4 457 253 124 21 chr13 16286612 16286798 -85586371 + MIR SINE MIR 58 262 0 271 268 52 57 chr13 16287173 16287367 -85585802 - L1MC5 LINE L1 -74 7887 7695 2380 163 12 15 chr13 16287471 16287875 -85585294 - MER57A LTR ERV1 0 403 1 756 179 0 14 chr13 16287956 16288096 -85585073 + MER104 DNA Tc2 28 165 -15 406 235 70 0 chr13 16289073 16289188 -85583981 + MER94 DNA DNA 12 134 0 648 343 85 50 chr13 16289188 16289352 -85583817 + L2 LINE L2 1779 1936 -1378 2118 125 0 10 chr13 16289352 16289655 -85583514 - AluSx SINE Alu -4 308 9 648 343 85 50 chr13 16289655 16290163 -85583006 + L2 LINE L2 1936 2474 -840 352 314 131 0 chr13 16290736 16290911 -85582258 + L2 LINE L2 2470 2667 -647 403 145 0 0 chr13 16292081 16292143 -85581026 - AluSp/q SINE Alu -86 227 166 610 180 22 43 chr13 16292865 16293004 -85580165 + LTR45 LTR ERV1 390 525 0 2332 90 6 10 chr13 16293092 16293403 -85579766 + AluSp SINE Alu 1 310 -3 1365 201 56 88 chr13 16293923 16294470 -85578699 + MER39 LTR ERV1 5 705 -2 234 209 0 0 chr13 16294993 16295036 -85578133 + LTR30 LTR ERV1 1 43 -679 1027 111 19 167 chr13 16295041 16295311 -85577858 + LTR12 LTR ERV1 49 278 -436 325 237 31 21 chr13 16295311 16295408 -85577761 + LTR30 LTR ERV1 546 643 -79 713 130 0 0 chr13 16295410 16295510 -85577659 + LTR12 LTR ERV1 615 714 0 648 193 0 62 chr13 16295847 16295992 -85577177 + MLT1E2 LTR MaLR 69 204 -420 1570 235 74 17 chr13 16295995 16296467 -85576702 + MER84 LTR ERVI 1 499 -8 1079 265 12 4 chr13 16296599 16296856 -85576313 + MLT1E2 LTR MaLR 368 626 0 1714 152 7 0 chr13 16297075 16297344 -85575825 + AluSq SINE Alu 9 279 -34 623 80 0 0 chr13 16297444 16297532 -85575637 - L1PB2 LINE L1 -115 6036 5949 256 287 43 11 chr13 16298057 16298151 -85575018 - L1ME LINE L1 -501 5620 5524 2563 14 3 0 chr13 16301184 16301487 -85571682 + AluYa5 SINE Alu 1 304 0 3214 180 40 32 chr13 16301491 16302208 -85570961 + L1MB7 LINE L1 5457 6179 -5 216 0 0 0 chr13 16302316 16302340 -85570829 + (T)n Simple_repeat Simple_repeat 1 24 0 2572 228 42 35 chr13 16302709 16303402 -85569767 + L1ME1 LINE L1 5479 6334 0 22 0 0 0 chr13 16303535 16303557 -85569612 + AT_rich Low_complexity Low_complexity 1 22 0 456 51 0 0 chr13 16304097 16304156 -85569013 + (TA)n Simple_repeat Simple_repeat 2 60 0 222 150 0 0 chr13 16304255 16304295 -85568874 + (TA)n Simple_repeat Simple_repeat 2 41 0 232 156 0 0 chr13 16304303 16304348 -85568821 - L1MC4 LINE L1 -1339 6703 6659 24 0 0 0 chr13 16306031 16306055 -85567114 + AT_rich Low_complexity Low_complexity 1 24 0 193 244 0 0 chr13 16306218 16306259 -85566910 + L2 LINE L2 3261 3301 -12 933 133 0 15 chr13 16306435 16306612 -85566557 - FLAM_C SINE Alu 0 175 1 190 330 70 20 chr13 16306685 16306785 -85566384 - L2 LINE L2 0 3272 3168 310 147 29 0 chr13 16306836 16306904 -85566265 + (TA)n Simple_repeat Simple_repeat 1 70 0 209 319 147 56 chr13 16306950 16307182 -85565987 - L2 LINE L2 -216 3056 2804 339 214 262 16 chr13 16307540 16307666 -85565503 + MER5B DNA MER1_type 22 178 0 225 266 177 13 chr13 16307709 16307788 -85565381 - MIR SINE MIR -94 114 23 1225 193 15 50 chr13 16308761 16309020 -85564149 + MIR SINE MIR 13 262 0 2148 98 31 3 chr13 16309149 16309435 -85563734 + AluSx SINE Alu 1 294 -18 484 72 48 84 chr13 16309583 16309666 -85563503 + MADE1 DNA Mariner 1 80 0 545 325 11 26 chr13 16310628 16310819 -85562350 - MIR3 SINE MIR -11 197 10 233 29 29 0 chr13 16310918 16310952 -85562217 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 1664 123 119 0 chr13 16311043 16311295 -85561874 + AluSx SINE Alu 1 282 -30 1993 114 0 0 chr13 16311368 16311630 -85561539 + AluSq SINE Alu 39 300 -13 2424 71 0 10 chr13 16312402 16312712 -85560457 - AluY SINE Alu -4 307 1 291 340 72 7 chr13 16313215 16313368 -85559801 - MIR SINE MIR 0 262 100 651 278 9 57 chr13 16313391 16313579 -85559590 - MIR SINE MIR -48 214 36 2180 93 0 54 chr13 16313579 16313892 -85559277 - AluSg1 SINE Alu -13 296 1 651 278 9 57 chr13 16313892 16313915 -85559254 - MIR SINE MIR -226 36 13 2096 126 3 16 chr13 16314614 16314931 -85558238 + AluSq SINE Alu 1 313 0 1998 116 3 39 chr13 16315689 16315999 -85557170 - AluSx SINE Alu -9 303 5 1795 99 12 24 chr13 16316722 16316975 -85556194 + AluSq SINE Alu 1 250 -63 1189 54 7 7 chr13 16316975 16317123 -85556046 + MER4B LTR ERV1 463 610 0 396 268 19 79 chr13 16317317 16317634 -85555535 - HAL1 LINE L1 -1333 1174 877 330 239 112 9 chr13 16317760 16317973 -85555196 + L1ME LINE L1 5568 5854 -267 1026 195 41 1 chr13 16318418 16318740 -85554429 - MER93b LTR ERV1 0 373 6 1977 150 0 10 chr13 16318800 16319100 -85554069 - AluSx SINE Alu -15 297 1 1682 146 58 85 chr13 16319543 16319921 -85553248 + L1MB1 LINE L1 5693 6060 -108 22 0 0 0 chr13 16320057 16320079 -85553090 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 16321007 16321028 -85552141 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 16321100 16321123 -85552046 + AT_rich Low_complexity Low_complexity 1 23 0 206 346 211 0 chr13 16321689 16321793 -85551376 + L2 LINE L2 3127 3252 -20 183 214 71 0 chr13 16321802 16321844 -85551325 + L3 LINE CR1 1530 1574 -3 186 274 145 48 chr13 16322001 16322125 -85551044 - MIR SINE MIR -3 259 124 1448 126 5 5 chr13 16324536 16324743 -85548426 + AluSq SINE Alu 1 207 -106 251 325 0 17 chr13 16325358 16325478 -85547691 + (TA)n Simple_repeat Simple_repeat 1 118 0 207 184 41 0 chr13 16325585 16325634 -85547535 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 854 233 115 84 chr13 16326167 16326519 -85546650 - LTR48B LTR ERV1 0 595 215 1813 97 0 12 chr13 16326519 16326766 -85546403 - AluSx SINE Alu -15 297 54 854 233 115 84 chr13 16326766 16326943 -85546226 - LTR48B LTR ERV1 -380 215 45 623 138 21 0 chr13 16326943 16327037 -85546132 + MER2 DNA MER2_type 2 97 -248 1512 198 0 30 chr13 16327037 16327335 -85545834 + AluJo SINE Alu 1 289 -23 182 91 30 0 chr13 16327339 16327372 -85545797 + (TA)n Simple_repeat Simple_repeat 2 35 0 219 36 0 0 chr13 16327372 16327400 -85545769 + (CA)n Simple_repeat Simple_repeat 2 29 0 225 162 0 0 chr13 16327401 16327438 -85545731 - MER2 DNA MER2_type -226 119 83 185 154 26 0 chr13 16327444 16327483 -85545686 + (TA)n Simple_repeat Simple_repeat 1 40 0 357 24 0 0 chr13 16327484 16327526 -85545643 + (TG)n Simple_repeat Simple_repeat 2 43 0 1302 222 134 82 chr13 16327537 16328251 -85544918 + LTR1B LTR ERV1 41 983 -37 451 175 0 12 chr13 16328307 16328387 -85544782 + MER4A LTR ERV1 20 98 -566 1776 136 47 23 chr13 16328387 16328724 -85544445 + MER4A LTR ERV1 261 664 0 720 241 88 32 chr13 16328751 16329000 -85544169 + MER2 DNA MER2_type 83 345 0 492 171 0 23 chr13 16329001 16329095 -85544074 - MER34C LTR ERV1 -503 82 4 316 145 0 79 chr13 16329106 16329182 -85543987 - L1ME4a LINE L1 -54 6067 5998 457 280 66 19 chr13 16329283 16329540 -85543629 - L1ME4a LINE L1 -281 5840 5572 933 125 0 0 chr13 16329540 16329699 -85543470 - AluY SINE Alu 0 316 158 259 236 0 42 chr13 16329836 16329908 -85543261 + MLT1C LTR MaLR 399 467 0 2379 96 0 0 chr13 16330188 16330481 -85542688 + AluSg SINE Alu 1 293 -17 210 37 0 0 chr13 16332164 16332191 -85540978 + (CA)n Simple_repeat Simple_repeat 2 28 0 1600 139 70 55 chr13 16333395 16333740 -85539429 - LOR1b LTR ERV1 -80 381 32 1877 151 0 50 chr13 16333753 16334072 -85539097 - MER1B DNA MER1_type 0 339 37 736 296 40 12 chr13 16334739 16334986 -85538183 + MIR SINE MIR 2 255 -7 1781 247 95 11 chr13 16335153 16335680 -85537489 - MLT1G LTR MaLR -11 579 9 2412 128 14 3 chr13 16335949 16336307 -85536862 + MER4B LTR ERV1 227 588 -22 1145 99 324 0 chr13 16336307 16336520 -85536649 + LTR12 LTR ERV1 1 282 -432 305 240 0 0 chr13 16336521 16336596 -85536573 + LTR30 LTR ERV1 550 624 -98 1206 93 57 3 chr13 16336596 16336788 -85536381 + LTR12 LTR ERV1 472 660 -54 2479 84 0 0 chr13 16336788 16337096 -85536073 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 16338101 16338122 -85535047 + AT_rich Low_complexity Low_complexity 1 21 0 1468 201 150 35 chr13 16338586 16339159 -85534010 + MER39 LTR ERV1 4 707 0 188 280 20 0 chr13 16339160 16339210 -85533959 - MIR SINE MIR -73 135 85 974 153 64 15 chr13 16340054 16340257 -85532912 - L1M4 LINE L1 -934 5212 5000 261 0 0 0 chr13 16340843 16340872 -85532297 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 14117 188 60 11 chr13 16341440 16346733 -85526436 - L1MA4 LINE L1 -7 6181 580 1586 215 3 3 chr13 16346733 16347026 -85526143 - AluJo SINE Alu -19 293 1 14117 188 60 11 chr13 16347026 16347285 -85525884 - L1MA4 LINE L1 -5608 580 335 845 331 3 48 chr13 16348479 16348794 -85524375 - L1MA4 LINE L1 -5614 341 42 2103 131 7 0 chr13 16348794 16349092 -85524077 - AluSx SINE Alu -12 300 1 845 331 3 48 chr13 16349092 16349132 -85524037 - L1MA4 LINE L1 -5913 42 2 251 163 0 0 chr13 16352516 16352559 -85520610 + MLT1K LTR MaLR 546 588 0 204 324 171 0 chr13 16352649 16352754 -85520415 + L2 LINE L2 3150 3272 0 788 128 0 64 chr13 16353064 16353252 -85519917 + (TTC)n Simple_repeat Simple_repeat 1 176 0 243 268 28 14 chr13 16353357 16353428 -85519741 + MER5B DNA MER1_type 7 78 -100 2174 138 0 0 chr13 16353430 16353742 -85519427 - AluSx SINE Alu 0 312 1 200 291 18 0 chr13 16354651 16354706 -85518463 + MIR3 SINE MIR 111 166 -42 10453 183 32 21 chr13 16354706 16357131 -85516038 + L1M1 LINE L1 3280 5743 -1822 2319 74 7 7 chr13 16357131 16357428 -85515741 + AluY SINE Alu 1 297 -14 10453 183 32 21 chr13 16357428 16357583 -85515586 + L1M1 LINE L1 5743 5895 -1670 1582 176 0 46 chr13 16357571 16357900 -85515269 + L1MD2 LINE L1 5529 5842 -517 * 1526 236 80 70 chr13 16357900 16358487 -85514682 + MLT1E2 LTR MaLR 1 624 -2 2124 200 66 22 chr13 16358489 16358763 -85514406 + L1MD2 LINE L1 5838 6145 -214 1704 137 53 66 chr13 16358763 16359143 -85514026 + THE1C LTR MaLR 1 375 0 2124 200 66 22 chr13 16359143 16359367 -85513802 + L1MD2 LINE L1 6145 6358 -1 34 24 0 0 chr13 16359390 16359431 -85513738 + AT_rich Low_complexity Low_complexity 1 41 0 593 230 36 0 chr13 16359539 16359678 -85513491 - Charlie7 DNA MER1_type -2141 471 328 2342 165 58 48 chr13 16359682 16360180 -85512989 - MLT1D LTR MaLR 0 505 3 548 306 49 61 chr13 16360186 16360513 -85512656 - Charlie7 DNA MER1_type -2289 323 1 1486 176 85 48 chr13 16360589 16360941 -85512228 - MLT1A1 LTR MaLR 0 365 1 312 244 90 0 chr13 16360997 16361075 -85512094 - MIR SINE MIR -116 146 62 362 296 9 26 chr13 16363180 16363295 -85509874 + MER5A DNA MER1_type 51 163 -26 348 268 89 32 chr13 16363199 16363322 -85509847 - MER5A DNA MER1_type -59 130 1 * 237 288 261 0 chr13 16363326 16363437 -85509732 - MIR3 SINE MIR -51 157 18 326 338 70 25 chr13 16363552 16363709 -85509460 + L3b LINE CR1 1412 1575 -8 231 103 0 0 chr13 16364475 16364514 -85508655 + (TA)n Simple_repeat Simple_repeat 1 39 0 187 149 21 21 chr13 16364558 16364605 -85508564 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 1219 167 99 111 chr13 16365858 16365926 -85507243 - MLT1B LTR MaLR 0 390 323 2068 113 3 7 chr13 16365926 16366260 -85506909 + AluSx SINE Alu 1 333 0 1219 167 99 111 chr13 16366260 16366584 -85506585 - MLT1B LTR MaLR -67 323 1 732 91 20 0 chr13 16366597 16366696 -85506473 + AluSg/x SINE Alu 197 297 -13 297 307 88 7 chr13 16367018 16367155 -85506014 + MIR SINE MIR 64 211 -51 200 330 91 0 chr13 16367843 16367931 -85505238 - L2 LINE L2 -43 3229 3134 345 296 0 113 chr13 16369414 16369524 -85503645 + MIR SINE MIR 20 109 -153 2303 75 0 0 chr13 16369524 16369828 -85503341 + AluSc SINE Alu 1 304 0 345 296 0 113 chr13 16369828 16369875 -85503294 + MIR SINE MIR 109 160 -102 258 282 71 12 chr13 16370626 16370711 -85502458 + L2 LINE L2 3209 3298 -15 242 325 69 96 chr13 16371144 16371235 -85501934 + L2 LINE L2 212 304 -3010 2226 174 62 2 chr13 16371235 16371637 -85501532 - MSTB LTR MaLR 0 426 1 242 325 69 96 chr13 16371637 16371818 -85501351 + L2 LINE L2 304 476 -2838 2122 134 0 7 chr13 16371818 16372124 -85501045 - AluSx SINE Alu -8 304 1 242 325 69 96 chr13 16372124 16372185 -85500984 + L2 LINE L2 476 537 -2777 376 296 24 53 chr13 16372249 16372418 -85500751 + L2 LINE L2 2220 2383 -931 2446 136 32 17 chr13 16372966 16373371 -85499798 - LTR57 LTR ERVL 0 411 1 1650 158 40 4 chr13 16373886 16374198 -85498971 - AluSx SINE Alu 0 322 1 3127 173 49 2 chr13 16375083 16375673 -85497496 - L1MB2 LINE L1 -16 6155 5538 21 0 0 0 chr13 16375726 16375747 -85497422 + AT_rich Low_complexity Low_complexity 1 21 0 377 20 20 0 chr13 16376271 16376321 -85496848 + (TG)n Simple_repeat Simple_repeat 2 52 0 1172 208 32 7 chr13 16376397 16376681 -85496488 + L1ME2 LINE L1 4569 4859 -1287 205 296 19 0 chr13 16377042 16377096 -85496073 + L2 LINE L2 3151 3205 -67 2310 94 10 0 chr13 16377294 16377603 -85495566 + AluSx SINE Alu 1 312 0 711 153 30 0 chr13 16378293 16378424 -85494745 - MER53 DNA DNA 0 189 55 506 222 131 17 chr13 16378430 16378606 -85494563 + L1MB8 LINE L1 5983 6178 0 270 295 179 27 chr13 16379139 16379251 -85493918 - L2 LINE L2 -1 3271 3143 4817 100 33 12 chr13 16380657 16381386 -85491783 + L1PB2 LINE L1 5406 6149 -2 21 0 0 0 chr13 16381386 16381407 -85491762 + AT_rich Low_complexity Low_complexity 1 21 0 3941 248 88 15 chr13 16381544 16383846 -85489323 + L1M3d LINE L1 802 3181 -3201 956 214 6 0 chr13 16383849 16384031 -85489138 - MLT2B1 LTR ERVL -317 203 21 1622 133 61 33 chr13 16384039 16384165 -85489004 + L1MB1 LINE L1 5830 5951 -217 2325 163 42 7 chr13 16384165 16384575 -85488594 + MSTB LTR MaLR 3 426 0 1622 133 61 33 chr13 16384575 16384778 -85488391 + L1MB1 LINE L1 5951 6168 0 322 231 19 58 chr13 16384884 16384988 -85488181 - MLT1C LTR MaLR -366 101 2 1427 186 82 48 chr13 16385032 16385409 -85487760 + MLT1B LTR MaLR 1 390 0 1174 261 88 15 chr13 16386046 16386375 -85486794 + MLT1E3 LTR MaLR 270 622 -2 2409 226 108 40 chr13 16386566 16387501 -85485668 + L1ME2 LINE L1 5163 6158 -6 2131 90 4 7 chr13 16387528 16387806 -85485363 + AluSx SINE Alu 1 277 -35 213 47 70 0 chr13 16387806 16387849 -85485320 + (CAA)n Simple_repeat Simple_repeat 3 48 0 503 284 89 48 chr13 16388564 16388856 -85484313 + L2 LINE L2 3006 3309 -4 21 36 0 0 chr13 16388866 16388894 -85484275 + AT_rich Low_complexity Low_complexity 1 28 0 2177 123 0 3 chr13 16388950 16389259 -85483910 - AluSp SINE Alu -5 308 1 1680 207 0 0 chr13 16389283 16389602 -85483567 - AluJb SINE Alu 0 320 2 1484 195 34 84 chr13 16390343 16390819 -85482350 + MLT1C LTR MaLR 1 452 -15 487 205 134 9 chr13 16391278 16391390 -85481779 + FLAM_A SINE Alu 1 126 -7 435 207 333 0 chr13 16392519 16392654 -85480515 - MER5A DNA MER1_type -1 188 9 221 253 110 117 chr13 16392724 16392878 -85480291 + L2 LINE L2 3094 3246 -26 385 309 66 22 chr13 16393976 16394112 -85479057 + MIR SINE MIR 1 142 -120 2042 125 0 0 chr13 16394435 16394754 -85478415 + AluSx SINE Alu 5 323 0 584 274 85 40 chr13 16394868 16395091 -85478078 + MLT1J2 LTR MaLR 1 233 -217 793 246 48 56 chr13 16395091 16395589 -85477580 - MER39 LTR ERV1 0 787 5 260 322 22 61 chr13 16395598 16395778 -85477391 + MLT1J1 LTR MaLR 241 413 -33 2043 135 6 6 chr13 16395780 16396092 -85477077 - AluSq SINE Alu -1 312 1 379 255 21 0 chr13 16398330 16398424 -85474745 + MIR SINE MIR 95 190 -72 220 146 24 0 chr13 16398838 16398879 -85474290 + (TTA)n Simple_repeat Simple_repeat 2 43 0 319 380 7 7 chr13 16399001 16399138 -85474031 + MER5B DNA MER1_type 1 137 -41 420 220 198 34 chr13 16399500 16399677 -85473492 + MIR SINE MIR 13 218 -44 246 298 81 24 chr13 16399719 16399843 -85473326 + MIR SINE MIR 2 132 -130 186 237 0 0 chr13 16399900 16399938 -85473231 - L2 LINE L2 -8 3264 3227 230 305 55 55 chr13 16400105 16400233 -85472936 + L2 LINE L2 2923 3050 -222 2221 118 3 7 chr13 16401313 16401618 -85471551 + AluSx SINE Alu 2 305 -7 342 299 35 40 chr13 16402663 16402837 -85470332 - MIR3 SINE MIR 0 208 36 192 333 74 43 chr13 16403019 16403277 -85469892 + L2 LINE L2 2820 3085 -187 2292 81 3 0 chr13 16403511 16403828 -85469341 - AluSx SINE Alu 0 318 1 1044 259 68 67 chr13 16403887 16404091 -85469078 - HAL1 LINE L1 -143 2364 2162 1749 115 76 49 chr13 16404091 16404379 -85468790 - AluSg SINE Alu -14 296 1 1044 259 68 67 chr13 16404379 16404480 -85468689 - HAL1 LINE L1 -345 2162 2063 1079 214 110 31 chr13 16404480 16404797 -85468372 - MER2 DNA MER2_type -1 343 2 1044 259 68 67 chr13 16404797 16405061 -85468108 - HAL1 LINE L1 -444 2063 1793 1208 250 125 35 chr13 16405578 16406153 -85467016 + L1M4 LINE L1 4627 5253 -893 4978 163 50 30 chr13 16406305 16406614 -85466555 - L1MA4 LINE L1 -165 6135 5834 2369 76 17 0 chr13 16406614 16406916 -85466253 - AluY SINE Alu 0 311 5 4978 163 50 30 chr13 16406916 16407399 -85465770 - L1MA4 LINE L1 -466 5834 5362 2114 105 6 53 chr13 16407399 16407722 -85465447 - AluSx SINE Alu -4 308 1 4978 163 50 30 chr13 16407722 16408636 -85464533 - L1MA4 LINE L1 -938 5362 4393 22 0 0 0 chr13 16409100 16409122 -85464047 + AT_rich Low_complexity Low_complexity 1 22 0 299 341 67 0 chr13 16409164 16409299 -85463870 - L2 LINE L2 -213 3059 2916 1595 208 38 35 chr13 16411604 16411792 -85461377 - MLT1A2 LTR MaLR -17 357 166 2178 102 0 10 chr13 16411792 16412087 -85461082 - AluSg SINE Alu -18 292 1 1595 208 38 35 chr13 16412087 16412244 -85460925 - MLT1A2 LTR MaLR -208 166 11 194 115 0 66 chr13 16413051 16413112 -85460057 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 26 0 0 0 chr13 16413237 16413263 -85459906 + AT_rich Low_complexity Low_complexity 1 26 0 676 221 51 67 chr13 16413263 16413458 -85459711 - MIR SINE MIR -5 257 66 220 330 62 10 chr13 16413998 16414095 -85459074 - L2 LINE L2 -7 3265 3164 220 316 0 0 chr13 16414423 16414480 -85458689 + GA-rich Low_complexity Low_complexity 3 59 0 1080 158 77 0 chr13 16414703 16414886 -85458283 + AluJb SINE Alu 105 301 -11 1508 185 11 21 chr13 16415079 16415365 -85457804 + AluJo SINE Alu 9 291 -21 229 190 17 35 chr13 16415545 16415603 -85457566 - MER45B DNA AcHobo -232 808 752 282 344 48 43 chr13 16415824 16416010 -85457159 - MIR SINE MIR -56 206 20 215 325 65 26 chr13 16416440 16416517 -85456652 + MIR SINE MIR 19 98 -110 418 248 12 56 chr13 16416589 16416756 -85456413 + MER5A DNA MER1_type 7 157 -21 246 325 58 52 chr13 16416893 16417047 -85456122 + MIR SINE MIR 103 257 -5 665 255 62 21 chr13 16417077 16417269 -85455900 - MIR SINE MIR 0 262 63 22 80 0 0 chr13 16417643 16417693 -85455476 + AT_rich Low_complexity Low_complexity 1 50 0 2322 88 0 0 chr13 16417775 16418069 -85455100 + AluSc SINE Alu 1 294 -15 27 29 0 0 chr13 16418077 16418111 -85455058 + AT_rich Low_complexity Low_complexity 1 34 0 275 265 120 72 chr13 16418136 16418510 -85454659 - L1ME4a LINE L1 -113 6008 5617 381 297 116 47 chr13 16418608 16418928 -85454241 - L1ME4a LINE L1 -1326 4820 4479 443 189 106 23 chr13 16419035 16419167 -85454002 - L1MB7 LINE L1 -9 6175 6033 1823 211 43 85 chr13 16419172 16419763 -85453406 - L1ME4a LINE L1 -3314 2832 2276 2054 139 3 0 chr13 16419763 16420066 -85453103 + AluSx SINE Alu 9 312 0 1823 211 43 85 chr13 16420066 16420200 -85452969 - L1ME4a LINE L1 -3870 2276 2138 12246 139 23 4 chr13 16420204 16422126 -85451043 + Tigger4(Zombi) DNA MER2_type 5 1962 -769 602 233 30 8 chr13 16422158 16422291 -85450878 - MER5A DNA MER1_type -42 147 12 21 57 0 0 chr13 16422807 16422842 -85450327 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 16423007 16423028 -85450141 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 16423671 16423700 -85449469 + AT_rich Low_complexity Low_complexity 1 29 0 995 101 14 0 chr13 16424859 16424997 -85448172 + AluSg/x SINE Alu 154 293 -17 2481 132 27 41 chr13 16425679 16426117 -85447052 - MSTB1 LTR MaLR 0 432 1 2318 80 6 13 chr13 16426253 16426388 -85446781 + AluY SINE Alu 1 135 -176 2046 108 3 17 chr13 16426388 16426707 -85446462 + AluSp SINE Alu 1 313 0 2318 80 6 13 chr13 16426707 16426882 -85446287 + AluY SINE Alu 135 309 -2 246 279 16 0 chr13 16427818 16427879 -85445290 + MER5A DNA MER1_type 8 69 -120 370 343 181 16 chr13 16430731 16431096 -85442073 + L2 LINE L2 1048 1472 -1842 1254 175 73 14 chr13 16431121 16431571 -85441598 + Tigger7 DNA MER2_type 8 521 -212 459 180 22 0 chr13 16431570 16431659 -85441510 + Tigger7 DNA MER2_type 2400 2490 -1 * 743 172 59 18 chr13 16431744 16431913 -85441256 - L1M4 LINE L1 -805 5341 5166 1887 214 122 10 chr13 16432021 16432619 -85440550 - L1M4 LINE L1 -1133 5013 4349 2392 77 0 0 chr13 16432689 16432986 -85440183 + AluY SINE Alu 1 297 -14 245 312 201 0 chr13 16434208 16434362 -85438807 + MIR SINE MIR 57 241 -21 185 362 0 17 chr13 16434493 16434551 -85438618 - L2 LINE L2 -5 3267 3211 2170 114 3 10 chr13 16436526 16436824 -85436345 - AluSq SINE Alu -15 298 3 243 385 27 27 chr13 16439261 16439560 -85433609 + HAL1b LINE L1 216 514 -834 2247 229 86 57 chr13 16439923 16440453 -85432716 + L1MC5 LINE L1 6476 7045 -916 2278 133 37 3 chr13 16440453 16440805 -85432364 - THE1B LTR MaLR 0 364 1 2247 229 86 57 chr13 16440805 16441255 -85431914 + L1MC5 LINE L1 7045 7480 -481 309 265 64 54 chr13 16441395 16441602 -85431567 + L1ME3A LINE L1 5962 6162 -8 251 353 133 47 chr13 16441849 16442271 -85430898 + L2 LINE L2 2815 3272 0 351 234 32 11 chr13 16442750 16442844 -85430325 - MIR SINE MIR -89 173 78 1549 190 10 17 chr13 16443185 16443480 -85429689 + AluJo SINE Alu 1 293 -19 232 109 0 0 chr13 16443492 16443538 -85429631 - LTR66 LTR ERVL -171 439 394 188 159 0 23 chr13 16443544 16443588 -85429581 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 38 22 0 0 chr13 16443985 16444030 -85429139 + AT_rich Low_complexity Low_complexity 1 45 0 709 312 24 12 chr13 16444951 16445198 -85427971 - MIR SINE MIR 0 262 13 268 276 0 0 chr13 16445297 16445355 -85427814 - L2 LINE L2 -5 3308 3251 314 383 8 0 chr13 16445459 16445579 -85427590 + L1M4 LINE L1 3715 3835 -2311 32 0 0 0 chr13 16446243 16446275 -85426894 + AT_rich Low_complexity Low_complexity 1 32 0 1882 160 0 3 chr13 16446438 16446726 -85426443 + AluJo SINE Alu 4 290 -22 1580 139 14 11 chr13 16446764 16447044 -85426125 + L1MA8 LINE L1 6011 6291 0 825 336 33 4 chr13 16448467 16448738 -85424431 - LTR33 LTR ERVL -242 279 1 291 316 77 0 chr13 16448771 16448888 -85424281 - MIR SINE MIR -17 245 120 295 315 0 0 chr13 16448914 16449003 -85424166 - MIR SINE MIR -99 163 75 2353 154 21 34 chr13 16449078 16449552 -85423617 + L1MC1 LINE L1 5861 6328 -5 769 135 24 0 chr13 16452134 16452260 -85420909 - MER31A LTR ERV1 -70 415 287 853 95 0 0 chr13 16452267 16452372 -85420797 + AluSq/x SINE Alu 1 105 -208 952 105 13 0 chr13 16452399 16452551 -85420618 + (GAAA)n Simple_repeat Simple_repeat 2 155 0 1178 124 173 24 chr13 16452551 16452800 -85420369 - MER31A LTR ERV1 -199 286 1 261 0 0 0 chr13 16453718 16453747 -85419422 + (TTG)n Simple_repeat Simple_repeat 2 30 0 725 133 19 13 chr13 16454620 16454778 -85418391 - MER33 DNA MER1_type -27 336 178 972 176 0 33 chr13 16454780 16454962 -85418207 - FRAM SINE Alu 0 176 1 562 165 0 0 chr13 16454989 16455080 -85418089 - MER33 DNA MER1_type -205 119 29 24 77 0 0 chr13 16455480 16455532 -85417637 + AT_rich Low_complexity Low_complexity 1 52 0 215 100 75 12 chr13 16455540 16455620 -85417549 + (TA)n Simple_repeat Simple_repeat 2 86 0 222 191 0 0 chr13 16455655 16455702 -85417467 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 312 297 62 23 chr13 16456555 16456683 -85416486 - MIR SINE MIR -69 193 61 844 171 21 0 chr13 16458606 16458746 -85414423 - MER58B DNA MER1_type -5 336 194 1235 150 5 0 chr13 16458749 16458942 -85414227 - MLT1C LTR MaLR -2 465 272 2158 129 0 3 chr13 16458988 16459299 -85413870 + AluSq SINE Alu 1 310 -3 2060 131 0 10 chr13 16460433 16460730 -85412439 - AluSx SINE Alu -18 294 1 878 291 89 54 chr13 16460884 16461313 -85411856 - MLT1K LTR MaLR -60 528 85 2091 145 0 49 chr13 16462646 16463011 -85410158 + MER7A DNA MER2_type 2 346 0 287 264 107 16 chr13 16463337 16463458 -85409711 - MLT1K LTR MaLR -162 426 295 235 314 93 42 chr13 16463514 16463632 -85409537 - MLT1K LTR MaLR -399 189 66 2432 154 14 30 chr13 16463734 16464175 -85408994 + Tigger2a DNA MER2_type 1 434 0 5745 184 55 46 chr13 16464213 16464643 -85408526 - Charlie1a DNA MER1_type -1313 1448 1023 1670 167 47 0 chr13 16464643 16464918 -85408251 - AluJb SINE Alu -14 298 11 5745 184 55 46 chr13 16464918 16465918 -85407251 - Charlie1a DNA MER1_type -1738 1023 6 284 319 141 5 chr13 16466434 16466619 -85406550 + MIR SINE MIR 47 256 -6 290 203 0 0 chr13 16466915 16466974 -85406195 + AluSq SINE Alu 1 59 -249 7067 57 0 5 chr13 16466992 16467964 -85405205 - L1PA6 LINE L1 -3 6151 5182 18966 55 5 2 chr13 16467964 16470420 -85402749 + L1PA6 LINE L1 2740 5200 -946 1563 158 31 4 chr13 16470420 16470679 -85402490 + AluSq SINE Alu 41 306 -7 799 174 31 31 chr13 16471542 16471703 -85401466 + MLT1A2 LTR MaLR 1 161 -213 1651 164 61 3 chr13 16471710 16472003 -85401166 + AluJo SINE Alu 1 310 -2 183 80 0 0 chr13 16472005 16472030 -85401139 + (GGGAGA)n Simple_repeat Simple_repeat 4 28 0 1262 77 0 6 chr13 16472030 16472211 -85400958 + (GAA)n Simple_repeat Simple_repeat 1 180 0 1067 118 82 9 chr13 16472357 16472577 -85400592 - AluSx SINE Alu -45 267 32 189 107 0 0 chr13 16475053 16475081 -85398088 + (TAA)n Simple_repeat Simple_repeat 1 28 0 113 81 0 0 chr13 16475124 16475384 -85397785 + AT_rich Low_complexity Low_complexity 1 260 0 314 184 34 45 chr13 16475384 16475563 -85397606 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 368 155 48 48 chr13 16475506 16475674 -85397495 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 24 0 0 0 chr13 16475682 16475706 -85397463 + AT_rich Low_complexity Low_complexity 1 24 0 240 143 18 36 chr13 16476142 16476198 -85396971 + L1MB3 LINE L1 6109 6163 -20 503 295 61 64 chr13 16477009 16477304 -85395865 - L2 LINE L2 0 3313 3020 660 132 81 0 chr13 16477770 16477906 -85395263 - L1MC2 LINE L1 0 6344 6198 506 161 54 9 chr13 16477975 16478087 -85395082 - L1MC2 LINE L1 -145 6199 6083 230 247 241 25 chr13 16478490 16478563 -85394606 + MIR SINE MIR 71 127 -135 4175 91 4 0 chr13 16478563 16479115 -85394054 - MER41A LTR ERV1 0 554 1 230 247 241 25 chr13 16479115 16479199 -85393970 + MIR SINE MIR 127 262 0 2719 58 137 2 chr13 16479207 16479602 -85393567 + LTR7 LTR ERV1 1 448 -2 269 140 20 20 chr13 16480182 16480232 -85392937 - L2 LINE L2 0 3313 3264 4071 157 62 31 chr13 16480414 16481215 -85391954 - LTR1B LTR ERV1 0 826 1 1348 236 133 19 chr13 16481480 16482366 -85390803 + L1M4 LINE L1 4637 5621 -553 1380 128 0 5 chr13 16482368 16482571 -85390598 + AluSx SINE Alu 2 203 -109 233 67 0 0 chr13 16482620 16482650 -85390519 - MER53 DNA DNA -131 58 29 344 327 56 23 chr13 16482745 16482959 -85390210 + L2 LINE L2 549 769 -2545 676 271 24 19 chr13 16482969 16483176 -85389993 - L2 LINE L2 -208 3105 2898 209 328 17 0 chr13 16483791 16483849 -85389320 + L2 LINE L2 3201 3259 -13 230 54 0 27 chr13 16483849 16483886 -85389283 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 703 277 113 18 chr13 16484405 16484805 -85388364 - L2 LINE L2 -170 3143 2701 2543 52 0 3 chr13 16484925 16485233 -85387936 - AluSq SINE Alu -6 307 1 821 273 97 76 chr13 16486256 16486732 -85386437 + LTR16C LTR ERVL 4 489 -2 210 255 38 104 chr13 16486741 16486847 -85386322 + MER5A DNA MER1_type 84 182 -7 189 0 0 0 chr13 16486944 16486965 -85386204 + (TA)n Simple_repeat Simple_repeat 2 22 0 225 329 53 0 chr13 16487531 16487607 -85385562 - MIR SINE MIR -93 115 36 277 312 109 28 chr13 16488295 16488767 -85384402 + L1MC/D LINE L1 4501 5012 -1134 228 281 175 72 chr13 16488972 16489544 -85383625 + L1MC/D LINE L1 5273 5903 -1905 22 0 0 0 chr13 16489551 16489573 -85383596 + AT_rich Low_complexity Low_complexity 1 22 0 363 229 57 41 chr13 16490766 16490888 -85382281 - MIR SINE MIR -33 229 106 589 249 30 28 chr13 16492287 16492507 -85380662 - L1MC/D LINE L1 -470 5651 5437 552 327 62 2 chr13 16492718 16493167 -85380002 - L1MC/D LINE L1 -1842 4304 3829 * 904 226 0 11 chr13 16493158 16493339 -85379830 + AluJo SINE Alu 124 302 -10 24 32 0 0 chr13 16493550 16493581 -85379588 + AT_rich Low_complexity Low_complexity 1 31 0 1009 165 6 0 chr13 16494045 16494203 -85378966 + FRAM SINE Alu 13 171 -5 428 207 0 0 chr13 16494340 16494422 -85378747 - AluJ/FLAM SINE Alu -225 87 6 1561 151 34 45 chr13 16494575 16494867 -85378302 - AluJo SINE Alu -23 289 1 638 150 35 9 chr13 16495567 16495680 -85377489 - U5 snRNA snRNA 0 116 1 1781 139 90 13 chr13 16496919 16497229 -85375940 - MER1B DNA MER1_type -3 334 1 22 0 0 0 chr13 16497626 16497648 -85375521 + AT_rich Low_complexity Low_complexity 1 22 0 188 277 135 57 chr13 16497765 16497930 -85375239 + MIR SINE MIR 19 188 -62 237 331 86 63 chr13 16498484 16498659 -85374510 - MIR SINE MIR -71 191 13 216 298 164 10 chr13 16498939 16499043 -85374126 + MIR SINE MIR 21 140 -122 236 244 126 76 chr13 16499129 16499248 -85373921 + MIR SINE MIR 20 144 -118 432 55 0 0 chr13 16499464 16499519 -85373650 + (TA)n Simple_repeat Simple_repeat 1 55 0 271 286 158 5 chr13 16500514 16500717 -85372452 - L2 LINE L2 -3 3310 3077 309 299 1 27 chr13 16500882 16501050 -85372119 - L1MC/D LINE L1 -305 5816 5673 1636 206 126 22 chr13 16502278 16502859 -85370310 - L1ME2 LINE L1 -12 6963 6323 748 216 58 32 chr13 16502864 16503206 -85369963 - L1ME2 LINE L1 -2969 3988 3638 554 187 53 120 chr13 16503244 16503527 -85369642 - L1ME2 LINE L1 -3587 3370 3107 577 259 142 12 chr13 16503534 16503858 -85369311 - L1ME2 LINE L1 -4549 2408 1942 616 249 61 30 chr13 16503871 16504168 -85369001 - L1ME2 LINE L1 -5348 1511 1206 447 238 54 12 chr13 16504884 16505052 -85368117 - L1MEc LINE L1 -4614 1782 1608 536 296 170 28 chr13 16505097 16505496 -85367673 - L1MEc LINE L1 -4659 1556 1101 440 214 139 9 chr13 16505503 16505718 -85367451 - L1MEc LINE L1 -5352 1044 802 1394 166 69 12 chr13 16505826 16506146 -85367023 + Tigger2 DNA MER2_type 1 338 -2380 1730 145 0 42 chr13 16506166 16506477 -85366692 + MER1B DNA MER1_type 40 337 -2 707 137 65 0 chr13 16506477 16506598 -85366571 + Tigger2 DNA MER2_type 344 472 -2246 235 135 0 0 chr13 16506608 16506645 -85366524 + Tigger2 DNA MER2_type 708 744 -1974 969 173 142 0 chr13 16506681 16506907 -85366262 + Tigger2 DNA MER2_type 2461 2718 0 397 358 30 20 chr13 16506918 16507119 -85366050 - L1MEc LINE L1 -5696 700 498 814 225 60 30 chr13 16507129 16507188 -85365981 + Tigger7 DNA MER2_type 24 80 -428 1645 181 13 29 chr13 16507188 16507497 -85365672 + AluJo SINE Alu 1 304 -8 814 225 60 30 chr13 16507497 16507652 -85365517 + Tigger7 DNA MER2_type 80 243 -265 228 336 27 7 chr13 16507679 16507825 -85365344 - L1MEc LINE L1 -6007 389 241 379 267 78 0 chr13 16508912 16509028 -85364141 - MIR SINE MIR -17 245 121 599 309 49 14 chr13 16509447 16509732 -85363437 - L1ME LINE L1 -5666 404 110 11759 153 38 5 chr13 16509744 16512223 -85360946 - L1M1 LINE L1 -4027 3538 263 2120 118 7 7 chr13 16512223 16512527 -85360642 - AluSx SINE Alu -8 304 1 11759 153 38 5 chr13 16512527 16512788 -85360381 - L1M1 LINE L1 -7302 263 12 252 222 0 16 chr13 16512785 16512848 -85360321 - L1ME LINE L1 -5964 106 45 * 811 297 139 43 chr13 16512903 16513556 -85359613 + L2 LINE L2 1692 2407 -907 388 258 52 45 chr13 16514226 16514381 -85358788 - L2 LINE L2 0 3313 3158 255 125 0 0 chr13 16514381 16514421 -85358748 + (CAGA)n Simple_repeat Simple_repeat 2 41 0 471 216 141 124 chr13 16514512 16514659 -85358510 - L2 LINE L2 -350 2964 2821 775 170 149 48 chr13 16514659 16514847 -85358322 + MER63A DNA MER1_type 4 210 0 471 216 141 124 chr13 16514847 16514924 -85358245 - L2 LINE L2 -493 2821 2747 1930 148 23 3 chr13 16514924 16515228 -85357941 + AluSx SINE Alu 1 310 -2 471 216 141 124 chr13 16515228 16515293 -85357876 - L2 LINE L2 -567 2747 2669 1230 291 149 29 chr13 16515566 16516600 -85356569 + Charlie8 DNA MER1_type 339 1612 -805 2048 167 44 39 chr13 16516600 16517031 -85356138 - Tigger2a DNA MER2_type -1 433 1 1230 291 149 29 chr13 16517031 16517463 -85355706 + Charlie8 DNA MER1_type 1612 1991 -426 403 208 21 10 chr13 16520208 16520304 -85352865 + MER95 LTR ERV 22 118 -313 336 115 103 13 chr13 16520404 16520482 -85352687 + MER95 LTR ERV 343 427 -4 3265 137 24 0 chr13 16520554 16521387 -85351782 - L1P4 LINE L1 -368 5795 4949 2154 119 3 0 chr13 16521387 16521715 -85351454 + L1PA13 LINE L1 5830 6158 -5 246 316 53 13 chr13 16522936 16523012 -85350157 - L2 LINE L2 -4 3309 3231 1877 169 20 31 chr13 16524764 16525154 -85348015 + MLT1B LTR MaLR 1 386 -4 265 381 35 10 chr13 16525303 16525505 -85347664 - L3 LINE CR1 -258 1319 1113 871 162 40 0 chr13 16525847 16525995 -85347174 - FRAM SINE Alu -23 153 1 2182 105 0 53 chr13 16526277 16526600 -85346569 + AluSq SINE Alu 1 306 -7 203 250 33 11 chr13 16527544 16527636 -85345533 + (TA)n Simple_repeat Simple_repeat 2 95 0 2172 181 19 14 chr13 16528850 16529270 -85343899 - MSTB LTR MaLR -4 422 1 199 259 35 0 chr13 16529620 16529678 -85343491 - L2 LINE L2 -540 2774 2715 313 0 0 0 chr13 16529723 16529760 -85343409 - MSTB LTR MaLR -372 54 18 200 216 20 0 chr13 16530505 16530556 -85342613 + (CAAT)n Simple_repeat Simple_repeat 3 54 0 2367 82 3 16 chr13 16530703 16531008 -85342161 + AluSp SINE Alu 1 301 -12 525 319 113 34 chr13 16531119 16531794 -85341375 + HERVL LTR ERVL 1362 2089 -3675 215 265 0 0 chr13 16531850 16531899 -85341270 + (TA)n Simple_repeat Simple_repeat 2 50 0 341 281 21 10 chr13 16531906 16532002 -85341167 + HERVL LTR ERVL 2171 2267 -3497 286 315 159 26 chr13 16532015 16532355 -85340814 + HERVL LTR ERVL 4506 4890 -764 302 338 22 35 chr13 16532506 16532737 -85340432 + HERVL LTR ERVL 5072 5299 -186 2584 129 194 21 chr13 16533241 16533766 -85339403 + MER51A LTR ERV1 1 616 -18 342 269 0 55 chr13 16534090 16534235 -85338934 + LTR67 LTR ERVL 414 550 -7 197 83 28 0 chr13 16535661 16535697 -85337472 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 513 299 57 6 chr13 16535922 16536079 -85337090 - MIR3 SINE MIR -14 194 30 2105 203 60 6 chr13 16536115 16536594 -85336575 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr13 16537359 16537381 -85335788 + AT_rich Low_complexity Low_complexity 1 22 0 2271 90 3 0 chr13 16537382 16537692 -85335477 + AluSp SINE Alu 1 311 -2 199 111 0 0 chr13 16537739 16537766 -85335403 + L2 LINE L2 3232 3258 -14 245 312 174 7 chr13 16538162 16538300 -85334869 - MIR SINE MIR -6 256 96 316 304 175 21 chr13 16538539 16538733 -85334436 + MIR SINE MIR 19 242 -20 2148 128 0 3 chr13 16539236 16539549 -85333620 - AluSx SINE Alu 0 312 1 714 270 75 107 chr13 16540016 16540390 -85332779 - L2 LINE L2 -1 3271 2910 210 341 62 31 chr13 16540555 16540684 -85332485 + L2 LINE L2 2954 3086 -186 332 276 265 0 chr13 16540744 16540929 -85332240 + MIR SINE MIR 26 259 -3 234 431 36 6 chr13 16540960 16541127 -85332042 + L2 LINE L2 3099 3270 -2 269 366 66 22 chr13 16541630 16541813 -85331356 + MIR3 SINE MIR 9 199 -9 633 266 131 18 chr13 16541975 16542204 -85330965 - MIR SINE MIR -6 256 2 208 372 0 0 chr13 16542212 16542298 -85330871 - MIR SINE MIR -15 247 162 213 252 18 18 chr13 16542637 16542748 -85330421 + (TTATA)n Simple_repeat Simple_repeat 5 115 0 227 181 15 98 chr13 16542801 16542934 -85330235 + (TATAA)n Simple_repeat Simple_repeat 3 124 0 315 267 111 39 chr13 16542960 16543140 -85330029 + MIR SINE MIR 57 249 -13 26 0 0 0 chr13 16543256 16543282 -85329887 + AT_rich Low_complexity Low_complexity 1 26 0 290 222 152 66 chr13 16543321 16543625 -85329544 - L2 LINE L2 -677 2637 2317 188 61 61 0 chr13 16544535 16544568 -85328601 + A-rich Low_complexity Low_complexity 2 36 0 1822 172 53 3 chr13 16544789 16545108 -85328061 - MER7A DNA MER2_type -13 333 1 781 216 33 19 chr13 16545108 16545357 -85327812 - L1MA9 LINE L1 -33 6266 5997 2117 177 60 24 chr13 16545364 16545815 -85327354 - MLT1C LTR MaLR 0 467 1 373 289 83 62 chr13 16548821 16549157 -85324012 + L1ME LINE L1 4477 4819 -1327 249 284 110 55 chr13 16549159 16549268 -85323901 + L2 LINE L2 3198 3312 -1 490 196 209 13 chr13 16549857 16550015 -85323154 + MER5A DNA MER1_type 1 189 0 2095 168 43 33 chr13 16550632 16551178 -85321991 + MLT2A2 LTR ERVL 1 554 0 318 329 43 0 chr13 16551341 16551502 -85321667 + L1ME LINE L1 5569 5736 -385 696 266 84 21 chr13 16552974 16553211 -85319958 + MIR SINE MIR 11 262 0 1431 220 36 51 chr13 16553439 16553907 -85319262 + MER65B LTR ERV1 1 461 -70 23 78 0 0 chr13 16554083 16554134 -85319035 + AT_rich Low_complexity Low_complexity 1 51 0 241 378 20 26 chr13 16554556 16554707 -85318462 + GA-rich Low_complexity Low_complexity 1 150 0 2279 30 0 0 chr13 16554712 16554981 -85318188 - L1PA3 LINE L1 -142 6013 5745 320 130 78 26 chr13 16554981 16555058 -85318111 + MER65B LTR ERV1 440 520 -11 183 80 0 0 chr13 16555226 16555251 -85317918 + (TG)n Simple_repeat Simple_repeat 2 26 0 227 125 50 0 chr13 16555265 16555305 -85317864 + L1MA9 LINE L1 6196 6237 -75 219 116 0 47 chr13 16555306 16555349 -85317820 + (TA)n Simple_repeat Simple_repeat 1 41 0 526 134 42 33 chr13 16555355 16555603 -85317566 + (TATG)n Simple_repeat Simple_repeat 1 250 0 535 122 39 39 chr13 16555609 16555789 -85317380 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 264 174 0 76 chr13 16555789 16555881 -85317288 + (TA)n Simple_repeat Simple_repeat 1 85 0 358 172 115 0 chr13 16555882 16555969 -85317200 - L1MA9 LINE L1 -40 6272 6176 1114 158 48 31 chr13 16555969 16556197 -85316972 - L1MA9 LINE L1 -101 6211 5980 314 203 20 27 chr13 16556197 16556345 -85316824 + (TA)n Simple_repeat Simple_repeat 2 148 0 995 252 9 0 chr13 16556378 16556588 -85316581 - MER58A DNA MER1_type -9 215 4 655 267 85 21 chr13 16557976 16558221 -85314948 - MIR SINE MIR -13 249 3 661 193 62 0 chr13 16558602 16558747 -85314422 + L1MB7 LINE L1 6031 6184 0 436 322 87 51 chr13 16559494 16559829 -85313340 + L2 LINE L2 2925 3271 -1 371 324 35 17 chr13 16560803 16560976 -85312193 - MIR SINE MIR -51 211 36 438 285 62 8 chr13 16561138 16561268 -85311901 + MIR3 SINE MIR 3 139 -69 358 234 11 43 chr13 16562478 16562662 -85310507 + (CATA)n Simple_repeat Simple_repeat 1 178 0 1937 143 3 3 chr13 16563218 16563504 -85309665 + AluSx SINE Alu 1 286 -26 22 56 0 0 chr13 16563504 16563540 -85309629 + AT_rich Low_complexity Low_complexity 1 36 0 457 282 49 45 chr13 16564626 16564871 -85308298 - L1ME LINE L1 -368 5753 5508 653 274 30 79 chr13 16565559 16565825 -85307344 - MIR SINE MIR 0 262 10 251 324 140 59 chr13 16566190 16567053 -85306116 + L2 LINE L2 2296 3221 -51 556 79 13 0 chr13 16567241 16567317 -85305852 + MADE1 DNA Mariner 1 77 -3 2697 151 15 30 chr13 16567399 16567862 -85305307 + MSTB2 LTR MaLR 1 456 -1 350 204 10 61 chr13 16568065 16568163 -85305006 + MIR3 SINE MIR 64 156 -52 348 313 36 62 chr13 16568347 16568366 -85304803 + L2 LINE L2 2892 2910 -362 2370 110 126 3 chr13 16568366 16568747 -85304422 + MSTA LTR MaLR 1 428 0 348 313 36 62 chr13 16568747 16568922 -85304247 + L2 LINE L2 2910 3081 -191 465 281 252 5 chr13 16568994 16569204 -85303965 - MIR SINE MIR 0 262 1 192 353 47 12 chr13 16569222 16569307 -85303862 + L2 LINE L2 3184 3271 -1 236 311 11 56 chr13 16569514 16569604 -85303565 + L2 LINE L2 3184 3269 -3 435 317 0 22 chr13 16569834 16570017 -85303152 + GA-rich Low_complexity Low_complexity 1 179 0 203 258 30 30 chr13 16570163 16570229 -85302940 + MIR3 SINE MIR 137 202 -6 1282 236 106 64 chr13 16570333 16570787 -85302382 + MLT2B1 LTR ERVL 1 479 -41 378 0 0 0 chr13 16570787 16570829 -85302340 + (TG)n Simple_repeat Simple_repeat 2 43 0 1282 236 106 64 chr13 16570829 16570873 -85302296 + MLT2B1 LTR ERVL 479 520 0 1255 233 34 15 chr13 16572321 16572583 -85300586 + AluJb SINE Alu 9 275 -37 180 256 0 0 chr13 16573835 16573878 -85299291 - MIR SINE MIR -3 259 217 341 259 79 36 chr13 16574023 16574162 -85299007 - HsTC2 DNA Tc2 -107 1791 1647 * 405 174 209 0 chr13 16574161 16574247 -85298922 - HsTC2 DNA Tc2 -1764 134 31 388 179 214 0 chr13 16574334 16574418 -85298751 - HsTC2 DNA Tc2 -1766 132 31 300 356 83 21 chr13 16574762 16575099 -85298070 - L2 LINE L2 -404 2910 2553 410 258 43 0 chr13 16575312 16575405 -85297764 - L2 LINE L2 -2 3270 3174 1618 190 102 8 chr13 16575963 16576357 -85296812 - MER63 DNA MER1_type -1 1059 629 634 355 44 19 chr13 16576363 16576507 -85296662 - L2 LINE L2 -436 2878 2739 1492 100 45 0 chr13 16576507 16576727 -85296442 - MER30 DNA MER1_type 0 230 1 634 355 44 19 chr13 16576727 16576943 -85296226 - L2 LINE L2 -575 2739 2509 15123 196 18 29 chr13 16577714 16581537 -85291632 - L1MA4 LINE L1 -6 7713 3850 471 87 0 0 chr13 16581537 16581606 -85291563 - L1MA3 LINE L1 -1 6304 6236 15123 196 18 29 chr13 16581606 16582797 -85290372 - L1MA4 LINE L1 -3869 3850 2758 1980 150 40 0 chr13 16582797 16583097 -85290072 - AluSx SINE Alu 0 312 1 15123 196 18 29 chr13 16583097 16583273 -85289896 - L1MA4 LINE L1 -4961 2758 2582 186 43 0 0 chr13 16583349 16583372 -85289797 + (TA)n Simple_repeat Simple_repeat 1 23 0 5474 148 26 18 chr13 16583372 16584817 -85288352 - L1PB3 LINE L1 -1 6153 4706 1561 307 65 18 chr13 16584825 16585531 -85287638 - L1MA4 LINE L1 -6122 1444 706 5274 235 85 12 chr13 16585563 16586816 -85286353 - L1M1 LINE L1 -4065 1263 9 205 362 26 26 chr13 16587482 16587634 -85285535 - L3b LINE CR1 -328 1255 1104 274 393 124 5 chr13 16587881 16588082 -85285087 - L3 LINE CR1 -1132 445 221 556 256 25 103 chr13 16588642 16588884 -85284285 + MIR SINE MIR 26 248 -14 231 360 0 11 chr13 16589465 16589554 -85283615 + L2 LINE L2 3196 3283 -30 540 184 0 7 chr13 16589554 16589662 -85283507 - L1MA6 LINE L1 -295 5871 5770 2248 162 14 7 chr13 16589662 16590076 -85283093 + L1MA6 LINE L1 5879 6295 -5 21 0 0 0 chr13 16590083 16590104 -85283065 + AT_rich Low_complexity Low_complexity 1 21 0 2361 84 3 0 chr13 16590456 16590752 -85282417 + AluY SINE Alu 1 297 -14 21 71 0 0 chr13 16591047 16591089 -85282080 + AT_rich Low_complexity Low_complexity 1 42 0 249 276 0 0 chr13 16591128 16591186 -85281983 - L2 LINE L2 -223 3049 2992 212 254 141 42 chr13 16591203 16591274 -85281895 + MER91C DNA MER1_type 31 108 -32 7819 17 0 0 chr13 16591310 16592863 -85280306 + L1PA3 LINE L1 4593 6152 -3 2006 121 37 0 chr13 16592935 16593233 -85279936 - AluY SINE Alu 0 311 3 320 311 89 64 chr13 16593390 16593670 -85279499 - MLT1L LTR MaLR -161 454 168 896 186 6 0 chr13 16594072 16594228 -85278941 + L1PB4 LINE L1 5982 6138 -18 1328 110 24 5 chr13 16595636 16595845 -85277324 - L1PA13 LINE L1 -2 6161 5949 1060 210 134 7 chr13 16595848 16596047 -85277122 - L1MD2 LINE L1 -1 6358 6109 219 88 0 0 chr13 16596047 16596081 -85277088 + (TG)n Simple_repeat Simple_repeat 2 35 0 1060 210 134 7 chr13 16596081 16596171 -85276998 - L1MD2 LINE L1 -250 6109 6032 1306 243 73 18 chr13 16596429 16596865 -85276304 + L1MD2 LINE L1 5615 6074 -285 1374 202 31 39 chr13 16596866 16597222 -85275947 - MLT1A1 LTR MaLR -12 353 1 313 238 8 41 chr13 16597222 16597344 -85275825 + L1MD2 LINE L1 6068 6185 -174 231 269 0 39 chr13 16597539 16597617 -85275552 - MIR SINE MIR -180 82 8 293 258 113 24 chr13 16598060 16598184 -85274985 + L2 LINE L2 3138 3272 0 1972 131 34 0 chr13 16598435 16598726 -85274443 - AluSg SINE Alu -9 301 1 1002 196 0 5 chr13 16598848 16599052 -85274117 - MER3 DNA MER1_type -1 208 6 1239 206 51 71 chr13 16599315 16599708 -85273461 + MLT1D LTR MaLR 1 385 -120 284 260 34 2 chr13 16599828 16599957 -85273212 - L1M LINE L1 -749 5413 5281 274 253 0 0 chr13 16599980 16600063 -85273106 - L1M4 LINE L1 -933 5213 5131 1236 260 40 46 chr13 16600099 16600675 -85272494 + MER21B LTR ERV1 162 784 -79 770 304 93 27 chr13 16600688 16601385 -85271784 - L1MEc LINE L1 -2790 3636 2894 366 317 59 69 chr13 16601412 16601718 -85271451 - L1MEc LINE L1 -4237 2370 2068 1923 189 21 3 chr13 16601756 16602157 -85271012 + MER61C LTR ERV1 13 404 -30 598 308 59 17 chr13 16602192 16602669 -85270500 - L1MEc LINE L1 -4634 1973 1477 357 266 60 82 chr13 16602863 16603047 -85270122 - L1MEc LINE L1 -5433 993 814 25 0 0 0 chr13 16603117 16603142 -85270027 + AT_rich Low_complexity Low_complexity 1 25 0 940 139 30 0 chr13 16603142 16603308 -85269861 - L1MA3 LINE L1 0 6305 6135 423 238 98 21 chr13 16603315 16603508 -85269661 - Charlie7 DNA MER1_type -1945 667 460 308 289 62 0 chr13 16604044 16604141 -85269028 - MIR SINE MIR -43 219 117 863 251 37 8 chr13 16604142 16604287 -85268882 - MLT1E1 LTR MaLR 0 654 498 893 167 6 0 chr13 16604287 16604455 -85268714 + L1MA5 LINE L1 6132 6300 0 863 251 37 8 chr13 16604455 16604552 -85268617 - MLT1E1 LTR MaLR -156 498 405 316 177 33 73 chr13 16604584 16604744 -85268425 - MLT1E1 LTR MaLR -433 221 51 199 304 33 22 chr13 16606120 16606212 -85266957 - MIR SINE MIR -45 217 125 208 358 127 6 chr13 16606678 16606843 -85266326 + L2 LINE L2 2434 2618 -696 2709 210 81 15 chr13 16607181 16607926 -85265243 - Charlie1a DNA MER1_type -1306 1455 760 1965 135 55 22 chr13 16607926 16608289 -85264880 + THE1C LTR MaLR 1 375 0 9947 121 30 38 chr13 16608289 16609881 -85263288 + THE1C-int LTR MaLR 1 1580 0 1720 130 109 29 chr13 16609881 16610228 -85262941 + THE1C LTR MaLR 1 375 0 2709 210 81 15 chr13 16610228 16610443 -85262726 - Charlie1a DNA MER1_type -2000 761 368 1371 219 82 30 chr13 16610443 16610844 -85262325 + MLT2B1 LTR ERVL 2 423 -97 269 87 0 22 chr13 16610844 16610890 -85262279 + (TC)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr13 16610890 16610924 -85262245 + (CA)n Simple_repeat Simple_repeat 2 35 0 1484 212 45 17 chr13 16610962 16611321 -85261848 - Charlie1a DNA MER1_type -1082 373 5 397 257 59 0 chr13 16611436 16611572 -85261597 + MLT1K LTR MaLR 379 522 -66 200 35 35 0 chr13 16611572 16611601 -85261568 + (TC)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr13 16611857 16611881 -85261288 + (T)n Simple_repeat Simple_repeat 1 24 0 2172 101 3 3 chr13 16612051 16612349 -85260820 - AluY SINE Alu -13 298 1 542 315 64 5 chr13 16612584 16612803 -85260366 - MIR SINE MIR 0 262 31 221 277 12 48 chr13 16612856 16612939 -85260230 - L2 LINE L2 -4 3309 3230 402 311 115 43 chr13 16613496 16613801 -85259368 - L3 LINE CR1 -21 1556 1230 180 0 0 0 chr13 16614142 16614162 -85259007 + (A)n Simple_repeat Simple_repeat 1 20 0 1784 174 19 25 chr13 16615348 16615715 -85257454 - MLT1A1 LTR MaLR 0 365 1 219 233 62 123 chr13 16617475 16617621 -85255548 + MIR SINE MIR 56 192 -70 204 70 70 0 chr13 16617807 16617850 -85255319 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 713 313 37 67 chr13 16618689 16619124 -85254045 - L2 LINE L2 -2 3311 2890 307 319 72 30 chr13 16620037 16620203 -85252966 + L2 LINE L2 2695 2867 -447 2515 163 12 0 chr13 16620598 16621021 -85252148 - MSTA LTR MaLR 0 428 1 192 338 44 0 chr13 16621091 16621159 -85252010 + MIR SINE MIR 38 108 -100 204 348 70 81 chr13 16621701 16621793 -85251376 + L2 LINE L2 2807 2898 -374 860 149 20 51 chr13 16621793 16621988 -85251181 - MER53 DNA DNA 0 189 1 204 348 70 81 chr13 16621988 16622364 -85250805 + L2 LINE L2 2898 3270 -2 304 307 102 0 chr13 16623296 16623423 -85249746 + L1ME4a LINE L1 5573 5712 -409 280 273 13 0 chr13 16623437 16623514 -85249655 + L1ME4a LINE L1 5788 5865 -256 346 281 51 39 chr13 16623817 16623995 -85249174 + L1ME4a LINE L1 5942 6121 0 918 253 89 50 chr13 16625536 16625975 -85247194 + MLT1C LTR MaLR 6 461 -6 355 202 167 39 chr13 16625975 16626092 -85247077 + MIR SINE MIR 18 161 -93 1290 157 197 14 chr13 16626092 16626386 -85246783 + MER7A DNA MER2_type 1 346 0 355 202 167 39 chr13 16626386 16626423 -85246746 + MIR SINE MIR 161 192 -62 205 326 0 0 chr13 16627061 16627110 -85246059 + L2 LINE L2 3008 3056 -257 1986 138 3 22 chr13 16627692 16628010 -85245159 + AluSx SINE Alu 1 312 0 2420 96 0 0 chr13 16628301 16628603 -85244566 - AluSg SINE Alu -8 302 1 235 125 0 0 chr13 16628620 16628660 -85244509 - MER103 DNA DNA -119 47 8 2182 104 7 0 chr13 16628955 16629243 -85243926 - AluSx SINE Alu -22 290 1 289 331 50 50 chr13 16630453 16630592 -85242577 + MIR3 SINE MIR 4 142 -66 4175 96 12 5 chr13 16630734 16631330 -85241839 - L1PA11 LINE L1 0 6174 5575 951 297 88 23 chr13 16631359 16631800 -85241369 - LTR16C LTR ERVL 0 491 22 21 0 0 0 chr13 16631860 16631881 -85241288 + AT_rich Low_complexity Low_complexity 1 21 0 1004 202 0 5 chr13 16632278 16632466 -85240703 - MER58A DNA MER1_type 0 224 38 325 314 65 20 chr13 16632476 16632629 -85240540 - L1ME LINE L1 -353 5809 5650 1911 141 0 14 chr13 16632649 16632933 -85240236 + AluSx SINE Alu 1 280 -32 363 254 97 92 chr13 16633168 16633396 -85239773 - L1MEd LINE L1 -5871 248 20 231 329 57 0 chr13 16633547 16633617 -85239552 + L2 LINE L2 3150 3223 -49 193 276 103 60 chr13 16634060 16634176 -85238993 - L2 LINE L2 -262 3051 2931 335 58 58 0 chr13 16634411 16634463 -85238706 + CT-rich Low_complexity Low_complexity 4 58 0 1807 119 8 0 chr13 16634463 16634715 -85238454 - AluSx SINE Alu -3 309 56 4796 194 36 7 chr13 16635523 16635677 -85237492 + L1MC3 LINE L1 5311 5459 -2326 192 77 0 0 chr13 16635677 16635703 -85237466 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4796 194 36 7 chr13 16635703 16636630 -85236539 + L1MC3 LINE L1 5459 6424 -1361 3713 191 133 42 chr13 16636647 16637054 -85236115 + L1MC3 LINE L1 6614 6982 -803 2752 118 80 4 chr13 16637054 16637528 -85235641 + L1MA4 LINE L1 5785 6294 -6 3713 191 133 42 chr13 16637528 16638194 -85234975 + L1MC3 LINE L1 6982 7785 0 24 32 0 0 chr13 16638324 16638355 -85234814 + AT_rich Low_complexity Low_complexity 1 31 0 28 95 0 0 chr13 16638711 16638795 -85234374 + AT_rich Low_complexity Low_complexity 1 84 0 576 338 49 21 chr13 16639585 16639913 -85233256 + L2 LINE L2 2020 2356 -958 216 284 101 81 chr13 16640051 16640199 -85232970 + L2 LINE L2 2564 2714 -600 1085 120 0 21 chr13 16640342 16640533 -85232636 - L1MA5A LINE L1 -1 6296 6110 392 298 50 8 chr13 16640674 16640795 -85232374 + L2 LINE L2 3145 3270 -2 270 81 0 0 chr13 16641677 16641714 -85231455 + (TA)n Simple_repeat Simple_repeat 2 38 0 233 258 43 0 chr13 16641726 16641819 -85231350 + L1MC4 LINE L1 6622 6718 -1324 198 71 0 0 chr13 16641822 16641850 -85231319 + (TA)n Simple_repeat Simple_repeat 1 28 0 424 254 30 18 chr13 16641861 16642026 -85231143 - L1M4 LINE L1 -957 5189 5023 1339 80 6 6 chr13 16642029 16642204 -85230965 - AluSp SINE Alu -3 310 136 490 291 102 11 chr13 16642274 16642645 -85230524 - L1M4 LINE L1 -1212 4934 4530 321 324 65 46 chr13 16642684 16643012 -85230157 + L2 LINE L2 2635 3055 -258 431 338 47 5 chr13 16643012 16643441 -85229728 + L1 LINE L1 3964 4410 -1736 333 214 90 11 chr13 16643442 16643531 -85229638 + L1 LINE L1 4419 4514 -1632 753 257 58 35 chr13 16643571 16644107 -85229062 + L1M4 LINE L1 3159 3747 -2399 36 53 0 0 chr13 16644123 16644180 -85228989 + AT_rich Low_complexity Low_complexity 1 57 0 37 23 0 0 chr13 16644296 16644340 -85228829 + AT_rich Low_complexity Low_complexity 1 44 0 1780 243 67 80 chr13 16644360 16645490 -85227679 + L1M4 LINE L1 3797 4912 -1234 24487 42 42 2 chr13 16645494 16648740 -85224429 + L1P LINE L1 3 3378 -2768 238 363 56 31 chr13 16649630 16649790 -85223379 - MIR SINE MIR -78 184 21 234 296 93 0 chr13 16650101 16650209 -85222960 - MLT1H LTR MaLR -11 538 421 384 318 8 58 chr13 16650325 16650567 -85222602 - MLT1H LTR MaLR -289 260 31 379 258 10 10 chr13 16650721 16650818 -85222351 + MIR3 SINE MIR 112 208 0 198 118 0 0 chr13 16651238 16651272 -85221897 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1738 170 3 7 chr13 16651275 16651558 -85221611 - AluJo SINE Alu -30 282 1 1610 167 48 0 chr13 16652467 16652760 -85220409 + Tigger3(Golem) DNA MER2_type 2722 3028 -1 262 280 210 14 chr13 16654441 16654584 -85218585 - MIR SINE MIR -11 251 81 241 356 43 17 chr13 16656029 16656144 -85217025 + L2 LINE L2 3191 3308 -5 296 256 144 0 chr13 16656187 16656277 -85216892 - MIR SINE MIR -76 132 30 376 337 0 18 chr13 16657312 16657475 -85215694 + MIR SINE MIR 71 230 -32 213 305 28 77 chr13 16657792 16658005 -85215164 - MIR SINE MIR -43 219 20 699 236 56 14 chr13 16659586 16659811 -85213358 + MLT1J2 LTR MaLR 1 236 -214 2273 68 3 10 chr13 16659927 16660222 -85212947 + AluSq SINE Alu 1 293 -20 399 229 27 122 chr13 16661478 16661666 -85211503 + MER102a DNA MER1_type 153 322 -8 725 313 111 27 chr13 16661800 16662276 -85210893 + L1M4 LINE L1 3682 4197 -1949 21 71 0 0 chr13 16662415 16662457 -85210712 + AT_rich Low_complexity Low_complexity 1 42 0 1003 213 4 29 chr13 16662511 16662755 -85210414 - MLT1E1 LTR MaLR -2 622 385 1454 96 5 0 chr13 16662762 16662949 -85210220 - AluSg/x SINE Alu -3 309 122 939 248 8 20 chr13 16663050 16663304 -85209865 - AluSx SINE Alu -52 260 10 1376 214 109 19 chr13 16663321 16663714 -85209455 - MLT1E1 LTR MaLR -257 395 6 341 289 13 7 chr13 16663746 16663895 -85209274 + L1M4 LINE L1 4549 4698 -1448 226 204 45 0 chr13 16664137 16664181 -85208988 + MER21B LTR ERV1 47 92 -771 1906 153 0 11 chr13 16664181 16664497 -85208672 - AluJb SINE Alu 0 319 7 1761 242 87 23 chr13 16664719 16665285 -85207884 + MER21B LTR ERV1 157 758 -105 24 0 0 0 chr13 16665702 16665726 -85207443 + AT_rich Low_complexity Low_complexity 1 24 0 1347 209 110 128 chr13 16666283 16667237 -85205932 + LTR1B LTR ERV1 3 1020 0 227 288 18 96 chr13 16668755 16669088 -85204081 - L2 LINE L2 -665 2649 2343 194 103 0 51 chr13 16670273 16670312 -85202857 + (TATATG)n Simple_repeat Simple_repeat 5 41 0 403 286 12 12 chr13 16670443 16670614 -85202555 - L1MC4 LINE L1 -8 8034 7864 1271 258 103 4 chr13 16670734 16671210 -85201959 - L1MC4 LINE L1 -585 7457 6935 387 191 11 11 chr13 16671323 16671412 -85201757 - L1ME1 LINE L1 -185 5981 5893 663 313 70 12 chr13 16671453 16671971 -85201198 - L1M4 LINE L1 -2376 3770 3223 531 315 79 68 chr13 16672113 16672557 -85200612 - L1MEd LINE L1 -5669 450 2 364 271 0 8 chr13 16672621 16672739 -85200430 - MER33 DNA MER1_type -2 322 206 576 215 80 10 chr13 16672794 16672994 -85200175 - MER33 DNA MER1_type -99 225 12 29 60 0 0 chr13 16673654 16673704 -85199465 + AT_rich Low_complexity Low_complexity 1 50 0 207 269 115 26 chr13 16673789 16673867 -85199302 - L2 LINE L2 -27 3245 3161 180 125 0 0 chr13 16673931 16673963 -85199206 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 204 222 0 0 chr13 16674494 16674530 -85198639 + polypyrimidine Low_complexity Low_complexity 1 36 0 269 373 28 14 chr13 16676320 16676462 -85196707 + L2 LINE L2 2685 2828 -486 262 365 88 0 chr13 16676503 16676651 -85196518 + L2 LINE L2 2894 3054 -218 186 310 113 14 chr13 16677993 16678064 -85195105 - L2 LINE L2 -9 3263 3186 246 176 0 0 chr13 16678597 16678648 -85194521 + CT-rich Low_complexity Low_complexity 2 52 0 1586 251 77 20 chr13 16678976 16679203 -85193966 + MER97c DNA MER1_type? 25 238 -852 210 37 0 0 chr13 16679203 16679230 -85193939 + (CA)n Simple_repeat Simple_repeat 2 28 0 1586 251 77 20 chr13 16679230 16679509 -85193660 + MER97c DNA MER1_type? 238 560 -530 797 230 151 42 chr13 16679558 16679915 -85193254 + L1ME1 LINE L1 5766 6161 -5 1743 175 0 7 chr13 16680489 16680769 -85192400 - AluJb SINE Alu -34 278 1 277 206 0 27 chr13 16682313 16682386 -85190783 + MER116 DNA Mariner 2 72 -8 306 106 0 0 chr13 16683175 16683222 -85189947 + (GA)n Simple_repeat Simple_repeat 2 48 0 14471 24 1 0 chr13 16684449 16686923 -85186246 + L1PA3 LINE L1 3677 6151 -4 346 264 147 48 chr13 16686937 16687168 -85186001 + L1M4 LINE L1 4566 4819 -1327 234 279 93 107 chr13 16687712 16687852 -85185317 + L2 LINE L2 2916 3053 -219 2121 192 35 76 chr13 16688132 16688548 -85184621 - L1MD3 LINE L1 -3 7992 7607 2145 85 0 21 chr13 16688548 16688829 -85184340 - AluY SINE Alu 0 311 37 2121 192 35 76 chr13 16688829 16689015 -85184154 - L1MD3 LINE L1 -388 7607 7415 500 313 85 31 chr13 16689069 16689328 -85183841 - L2 LINE L2 -9 3304 3032 2658 184 5 40 chr13 16689328 16689897 -85183272 + MER89 LTR ERV1 1 549 -10 3067 268 61 35 chr13 16689904 16690874 -85182295 - L2 LINE L2 -279 3034 2045 1121 191 69 132 chr13 16691144 16691567 -85181602 + MSTD LTR MaLR 1 396 0 325 218 26 26 chr13 16692721 16692799 -85180370 + MIR SINE MIR 72 149 -113 25 51 0 0 chr13 16693352 16693391 -85179778 + AT_rich Low_complexity Low_complexity 1 39 0 309 268 179 0 chr13 16693626 16693738 -85179431 - MIR SINE MIR -2 260 129 2542 77 0 0 chr13 16693918 16694229 -85178940 - AluY SINE Alu 0 311 1 1004 259 44 24 chr13 16694391 16694664 -85178505 + L1MEc LINE L1 159 425 -5971 2313 146 28 0 chr13 16694664 16695054 -85178115 + MER57A LTR ERV1 3 403 0 1004 259 44 24 chr13 16695054 16695793 -85177376 + L1MEc LINE L1 425 1237 -5159 327 339 57 32 chr13 16695896 16696176 -85176993 - MLT1K LTR MaLR -132 456 170 239 336 67 25 chr13 16696457 16696576 -85176593 + L2 LINE L2 3137 3260 -12 186 43 0 0 chr13 16696728 16696751 -85176418 + (T)n Simple_repeat Simple_repeat 1 23 0 297 218 13 13 chr13 16697711 16697789 -85175380 - HsTC2 DNA Tc2 -1820 78 1 376 304 52 0 chr13 16699733 16699868 -85173301 + MIR SINE MIR 51 192 -70 330 286 118 32 chr13 16700085 16700305 -85172864 + L2 LINE L2 2359 2597 -717 246 359 22 0 chr13 16700436 16700528 -85172641 + L2 LINE L2 3216 3309 -4 229 245 75 0 chr13 16700552 16700605 -85172564 - MIR SINE MIR -87 175 119 530 90 0 0 chr13 16700883 16700961 -85172208 - Alu SINE Alu -2 308 231 805 235 27 76 chr13 16702258 16702362 -85170807 - L1ME2 LINE L1 -5 6159 6051 2474 123 55 26 chr13 16702362 16702778 -85170391 + MSTC LTR MaLR 1 428 0 805 235 27 76 chr13 16702778 16703001 -85170168 - L1ME2 LINE L1 -113 6051 5848 946 231 103 41 chr13 16703108 16703498 -85169671 - MLT1G LTR MaLR -151 439 26 2029 147 14 0 chr13 16703717 16704010 -85169159 + AluSx SINE Alu 1 297 -15 404 177 0 62 chr13 16704373 16704469 -85168700 + MLT1D LTR MaLR 20 109 -517 1313 241 33 41 chr13 16704474 16704973 -85168196 + MLT1C LTR MaLR 6 505 0 896 194 112 23 chr13 16704984 16705242 -85167927 + MLT1D LTR MaLR 153 433 -72 2071 175 13 8 chr13 16705328 16705716 -85167453 + MLT1B LTR MaLR 1 390 0 220 374 84 9 chr13 16705737 16705844 -85167325 - MIR3 SINE MIR -54 154 40 341 294 126 14 chr13 16706885 16707028 -85166141 - MIR SINE MIR -84 178 20 197 257 196 34 chr13 16707022 16707170 -85165999 - MIR SINE MIR -22 240 69 * 837 201 11 11 chr13 16707495 16707684 -85165485 - MER53 DNA DNA 0 189 1 2884 152 47 80 chr13 16707792 16708639 -85164530 + L1MB8 LINE L1 5140 5964 -214 1979 104 61 0 chr13 16708639 16708917 -85164252 + AluY SINE Alu 1 295 -16 2884 152 47 80 chr13 16708917 16708958 -85164211 + L1MB8 LINE L1 5964 6005 -173 488 196 9 0 chr13 16709077 16709184 -85163985 + L1MB8 LINE L1 6064 6171 -7 1730 192 0 22 chr13 16709251 16709568 -85163601 + AluJo SINE Alu 2 311 -1 686 173 39 45 chr13 16709669 16709848 -85163321 + MLT1A1 LTR MaLR 185 362 -3 319 247 45 0 chr13 16709851 16709940 -85163229 - L1MC4a LINE L1 -1105 6703 6611 25 51 0 0 chr13 16710044 16710083 -85163086 + AT_rich Low_complexity Low_complexity 1 39 0 25285 92 21 3 chr13 16710088 16714697 -85158472 - L1PA8 LINE L1 -20 6467 1778 6805 105 3 15 chr13 16714688 16715698 -85157471 - L1PA8 LINE L1 -5454 1007 10 * 2060 156 0 3 chr13 16715713 16716015 -85157154 - AluSx SINE Alu -11 301 1 705 218 94 0 chr13 16716284 16716385 -85156784 - MER5A DNA MER1_type 0 189 99 225 0 0 0 chr13 16716385 16716410 -85156759 + (TG)n Simple_repeat Simple_repeat 1 25 0 705 218 94 0 chr13 16716410 16716478 -85156691 - MER5A DNA MER1_type -90 99 4 1612 189 106 64 chr13 16717190 16717646 -85155523 + MER34B LTR ERV1 1 467 -98 1619 206 3 10 chr13 16717646 16717947 -85155222 + AluJo SINE Alu 1 299 -13 1612 189 106 64 chr13 16717947 16718051 -85155118 + MER34B LTR ERV1 467 565 0 282 56 0 0 chr13 16718171 16718207 -85154962 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1438 182 74 4 chr13 16718210 16718357 -85154812 - AluJo SINE Alu -30 282 147 327 49 0 0 chr13 16718357 16718398 -85154771 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1438 182 74 4 chr13 16718398 16718508 -85154661 - AluJo SINE Alu -165 147 7 28 29 0 0 chr13 16718519 16718554 -85154615 + AT_rich Low_complexity Low_complexity 1 35 0 2407 61 6 10 chr13 16719038 16719350 -85153819 - AluY SINE Alu 0 311 1 279 0 0 0 chr13 16719433 16719464 -85153705 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 449 212 27 49 chr13 16719585 16719638 -85153531 - MER53 DNA DNA -2 187 134 2189 141 122 8 chr13 16719638 16720022 -85153147 - MSTA LTR MaLR 0 428 1 449 212 27 49 chr13 16720022 16720152 -85153017 - MER53 DNA DNA -55 134 8 2456 69 0 13 chr13 16720316 16720621 -85152548 - AluY SINE Alu -10 301 1 452 191 0 0 chr13 16720788 16720872 -85152297 + LTR62 LTR ERVK 1 84 -635 3355 154 40 27 chr13 16720973 16721648 -85151521 + LTR62 LTR ERVK 34 717 -2 618 277 27 27 chr13 16721697 16721921 -85151248 - MLT1H1 LTR MaLR -5 550 327 983 225 100 81 chr13 16721937 16722408 -85150761 + MER34 LTR ERV1 3 482 -60 243 241 35 0 chr13 16722408 16722495 -85150674 + (TA)n Simple_repeat Simple_repeat 1 90 0 706 222 34 36 chr13 16722611 16722854 -85150315 - MLT1H1 LTR MaLR -291 264 1 294 188 31 0 chr13 16723093 16723189 -85149980 + (TA)n Simple_repeat Simple_repeat 1 99 0 487 253 32 19 chr13 16723189 16723347 -85149822 + MER105 DNA DNA 43 202 -2 330 26 0 0 chr13 16723533 16723572 -85149597 + (CA)n Simple_repeat Simple_repeat 2 40 0 2738 7 0 3 chr13 16723781 16724083 -85149086 - AluYa5 SINE Alu -10 301 1 2546 211 31 31 chr13 16724428 16724978 -85148191 - MLT2B3 LTR ERVL -2 552 3 208 386 8 24 chr13 16726470 16726597 -85146572 - L2 LINE L2 -482 2832 2708 1017 275 144 27 chr13 16726727 16727130 -85146039 - L2 LINE L2 0 3313 2864 527 84 56 47 chr13 16727504 16727611 -85145558 + LTR45B LTR ERV1 343 450 -39 495 281 189 6 chr13 16727724 16727888 -85145281 - L2 LINE L2 -586 2728 2535 312 236 69 0 chr13 16729256 16729328 -85143841 + MIR SINE MIR 61 137 -71 1562 150 78 38 chr13 16729342 16729549 -85143620 - MER46B DNA MER2_type -2495 236 133 1848 177 7 7 chr13 16729549 16729848 -85143321 + AluJb SINE Alu 1 299 -13 1562 150 78 38 chr13 16729848 16729986 -85143183 - MER46B DNA MER2_type -2598 133 2 449 314 68 39 chr13 16729999 16730206 -85142963 - MIR SINE MIR -46 216 4 1926 206 40 0 chr13 16730370 16730749 -85142420 + MSTD LTR MaLR 1 394 -2 252 0 0 0 chr13 16730822 16730850 -85142319 + (CA)n Simple_repeat Simple_repeat 1 28 0 986 211 24 87 chr13 16731523 16731914 -85141255 + L1ME1 LINE L1 5674 6034 -132 2032 219 7 7 chr13 16731924 16732349 -85140820 - MLT1C LTR MaLR 0 467 43 2488 161 37 40 chr13 16732349 16732919 -85140250 - MER34C LTR ERV1 0 585 18 287 130 0 0 chr13 16732890 16732936 -85140233 - MLT1C LTR MaLR -421 46 1 * 437 148 188 0 chr13 16732936 16733037 -85140132 + L1ME1 LINE L1 6042 6161 -5 261 139 0 0 chr13 16733347 16733390 -85139779 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 259 114 48 chr13 16733407 16733573 -85139596 + L2 LINE L2 2915 3091 -181 7590 178 94 9 chr13 16734109 16735923 -85137246 - L1 LINE L1 -3706 2676 681 261 0 0 0 chr13 16735923 16735952 -85137217 + (TG)n Simple_repeat Simple_repeat 2 30 0 7590 178 94 9 chr13 16735952 16736079 -85137090 - L1 LINE L1 -5701 681 566 231 321 46 9 chr13 16736136 16736245 -85136924 - MER117 DNA MER1_type -51 146 34 289 331 82 0 chr13 16737209 16737361 -85135808 - MIR SINE MIR -54 208 45 515 296 43 5 chr13 16738820 16739006 -85134163 - MIR SINE MIR -14 248 56 498 248 0 0 chr13 16739683 16740100 -85133069 + (TG)n Simple_repeat Simple_repeat 1 417 0 233 268 0 0 chr13 16740516 16740572 -85132597 + (CA)n Simple_repeat Simple_repeat 1 56 0 548 232 6 0 chr13 16740584 16740761 -85132408 + (CA)n Simple_repeat Simple_repeat 1 178 0 263 275 88 47 chr13 16741067 16741238 -85131931 - L2 LINE L2 -955 2359 2182 1937 155 3 28 chr13 16744940 16745257 -85127912 - AluJb SINE Alu -3 309 1 196 294 162 0 chr13 16745258 16745326 -85127843 + MIR SINE MIR 114 192 -70 1044 266 58 30 chr13 16746189 16746584 -85126585 - MLT1I LTR MaLR 0 409 4 791 188 8 0 chr13 16746953 16747086 -85126083 + MER2 DNA MER2_type 1 134 -211 368 256 12 0 chr13 16747141 16747223 -85125946 + MER2 DNA MER2_type 263 345 0 274 189 21 53 chr13 16748295 16748390 -85124779 - MLT1I LTR MaLR 0 409 318 8928 116 58 12 chr13 16748424 16749867 -85123302 + THE1C-int LTR MaLR 67 1574 -6 1152 190 203 16 chr13 16749872 16750188 -85122981 + THE1C LTR MaLR 1 375 0 462 318 96 46 chr13 16750315 16750365 -85122804 - MIR SINE MIR -1 261 215 2302 94 0 0 chr13 16750365 16750653 -85122516 - AluSg SINE Alu -21 289 2 462 318 96 46 chr13 16750653 16750841 -85122328 - MIR SINE MIR -47 215 11 1128 249 86 90 chr13 16750996 16751220 -85121949 - MLT1E LTR MaLR -1 592 369 2348 83 0 6 chr13 16751220 16751533 -85121636 + AluY SINE Alu 1 311 0 1128 249 86 90 chr13 16751533 16751842 -85121327 - MLT1E LTR MaLR -224 369 61 366 313 41 29 chr13 16752145 16752490 -85120679 - L1ME4a LINE L1 -183 5938 5590 284 236 43 41 chr13 16752809 16752955 -85120214 - L1ME4a LINE L1 -646 5475 5327 666 266 41 22 chr13 16754816 16755083 -85118086 - L1ME4a LINE L1 -1031 5115 4844 835 228 43 17 chr13 16755305 16755661 -85117508 + L1M4 LINE L1 5144 5511 -667 239 233 0 0 chr13 16755666 16755726 -85117443 + LTR68 LTR ERV1 5 64 -676 1831 164 53 0 chr13 16755902 16756243 -85116926 + MER47A DNA MER2_type 8 366 0 3672 187 25 36 chr13 16756394 16756622 -85116547 + L1MB8 LINE L1 4902 5131 -1047 2477 177 88 4 chr13 16756622 16757102 -85116067 - MLT2B1 LTR ERVL 0 520 1 3672 187 25 36 chr13 16757102 16758073 -85115096 + L1MB8 LINE L1 5131 6084 -94 800 278 91 37 chr13 16761073 16761276 -85111893 - HAL1 LINE L1 -383 2124 1933 306 0 0 0 chr13 16761276 16761310 -85111859 + (TG)n Simple_repeat Simple_repeat 2 35 0 800 278 91 37 chr13 16761310 16761566 -85111603 - HAL1 LINE L1 -574 1933 1640 21 0 0 0 chr13 16761593 16761614 -85111555 + AT_rich Low_complexity Low_complexity 1 21 0 1366 274 120 58 chr13 16761812 16763300 -85109869 - HAL1 LINE L1 -927 1580 1 251 243 99 45 chr13 16764038 16764149 -85109020 - MER117 DNA MER1_type -79 118 2 286 136 0 0 chr13 16766250 16766294 -85106875 + AluSx SINE Alu 1 44 -258 2101 92 46 0 chr13 16766295 16766576 -85106593 + AluSx SINE Alu 15 308 -4 692 48 0 0 chr13 16767305 16767388 -85105781 + AluSx SINE Alu 23 105 -207 847 230 14 14 chr13 16767388 16767647 -85105522 - LTR12 LTR ERV1 -136 578 216 1206 166 5 45 chr13 16767795 16768018 -85105151 + AluSx SINE Alu 99 312 0 268 298 255 27 chr13 16768247 16768435 -85104734 + MIR SINE MIR 16 246 -16 198 156 0 0 chr13 16768458 16768503 -85104666 + A-rich Low_complexity Low_complexity 1 45 0 500 250 86 0 chr13 16769552 16769704 -85103465 - MLT2F LTR ERVL -14 649 485 416 286 61 0 chr13 16769947 16770094 -85103075 + MIR SINE MIR 36 191 -71 467 249 167 17 chr13 16770097 16770330 -85102839 - L2 LINE L2 0 3313 3046 1385 221 97 19 chr13 16770331 16770693 -85102476 - MLT1E LTR MaLR 0 593 204 336 334 51 68 chr13 16770855 16771117 -85102052 - L2 LINE L2 -258 3055 2798 749 216 92 80 chr13 16772479 16773002 -85100167 - L1M4 LINE L1 -1296 4850 4322 234 0 0 0 chr13 16773334 16773360 -85099809 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 289 100 22 chr13 16773731 16773821 -85099348 - MIR SINE MIR -101 161 65 22 56 0 0 chr13 16775523 16775559 -85097610 + AT_rich Low_complexity Low_complexity 1 36 0 243 324 65 14 chr13 16776012 16776151 -85097018 - L2 LINE L2 -1 3312 3167 212 338 83 8 chr13 16776411 16776544 -85096625 - L2 LINE L2 -602 2712 2570 291 71 0 0 chr13 16777394 16777436 -85095733 + (TG)n Simple_repeat Simple_repeat 1 42 0 3894 179 95 3 chr13 16778753 16779509 -85093660 + LTR1B LTR ERV1 1 826 0 2171 104 0 7 chr13 16781266 16781564 -85091605 + AluY SINE Alu 1 296 -15 22 0 0 0 chr13 16782095 16782117 -85091052 + AT_rich Low_complexity Low_complexity 1 22 0 2275 110 13 0 chr13 16782225 16782533 -85090636 + AluSx SINE Alu 1 312 0 287 299 127 0 chr13 16782786 16782920 -85090249 - L2 LINE L2 0 3272 3122 205 312 37 107 chr13 16783378 16783593 -85089576 + L2 LINE L2 298 497 -2817 260 264 58 0 chr13 16783792 16783879 -85089290 - MLT1J LTR MaLR -35 476 385 1153 233 56 15 chr13 16783899 16784290 -85088879 + LTR52 LTR ERVL 1 407 -14 919 319 31 11 chr13 16784305 16784659 -85088510 - MLT1J LTR MaLR -149 362 2 251 265 0 36 chr13 16785106 16785189 -85087980 + CT-rich Low_complexity Low_complexity 1 80 0 2085 148 0 7 chr13 16785479 16785782 -85087387 - AluSq SINE Alu -12 301 1 826 253 140 80 chr13 16785855 16786354 -85086815 - MLT1F1 LTR MaLR -10 557 4 897 324 140 44 chr13 16786369 16787777 -85085392 + L2 LINE L2 1756 3309 -4 1275 188 122 24 chr13 16787777 16788112 -85085057 - MER39 LTR ERV1 0 707 340 473 228 110 8 chr13 16788115 16788242 -85084927 - MER39 LTR ERV1 -567 140 1 895 185 85 25 chr13 16789013 16789213 -85083956 - AluJo SINE Alu -1 311 100 1547 173 121 36 chr13 16789232 16789421 -85083748 + LTR2B LTR ERV1 34 205 -285 246 62 0 0 chr13 16789421 16789453 -85083716 + (TTCTG)n Simple_repeat Simple_repeat 2 33 0 1547 173 121 36 chr13 16789453 16789684 -85083485 + LTR2B LTR ERV1 205 490 0 331 286 19 8 chr13 16789684 16789810 -85083359 - AluJ SINE Alu -197 105 17 234 224 0 0 chr13 16791201 16791250 -85081919 - L2 LINE L2 0 3313 3265 333 186 0 0 chr13 16791336 16791406 -85081763 + (CTA)n Simple_repeat Simple_repeat 2 71 0 256 200 44 33 chr13 16791921 16792011 -85081158 - HAL1 LINE L1 -476 2031 1941 589 242 81 57 chr13 16792039 16792457 -85080712 - HAL1 LINE L1 -1048 1459 1032 374 331 12 45 chr13 16792632 16792874 -85080295 + L2 LINE L2 3080 3313 0 300 282 72 76 chr13 16793418 16793680 -85079489 - L1ME LINE L1 -634 5528 5268 3456 259 46 7 chr13 16793783 16794774 -85078395 + ERVL LTR ERVL 1484 2513 -3251 533 318 10 28 chr13 16794775 16795025 -85078144 + ERVL LTR ERVL 2641 2892 -2768 453 239 99 85 chr13 16795025 16795226 -85077943 + MER58C DNA MER1_type 1 204 -11 2231 256 41 4 chr13 16795233 16795796 -85077373 + ERVL LTR ERVL 2921 3504 -2260 367 199 14 2 chr13 16795809 16795890 -85077279 + ERVL LTR ERVL 4285 4399 -1120 810 136 0 57 chr13 16796121 16796261 -85076908 - FLAM_C SINE Alu -1 132 1 2531 300 57 15 chr13 16796263 16797695 -85075474 + ERVL LTR ERVL 3633 5122 -363 1997 176 7 90 chr13 16797702 16798260 -85074909 + L1MB8 LINE L1 5667 6178 0 421 289 8 16 chr13 16798261 16798389 -85074780 + ERVL LTR ERVL 5176 5302 -462 459 146 178 0 chr13 16798396 16798531 -85074638 - L1MC3 LINE L1 -822 6975 6818 * 755 290 89 47 chr13 16798530 16799236 -85073933 - L1MEc LINE L1 -4128 2268 1533 303 293 36 72 chr13 16799426 16799760 -85073409 - L1M4 LINE L1 -2054 4092 3771 2106 99 3 54 chr13 16799922 16800236 -85072933 + AluSp SINE Alu 1 298 -15 518 283 139 9 chr13 16800679 16800909 -85072260 - HsTC2a DNA Tc2 -467 277 18 23 33 0 0 chr13 16801416 16801446 -85071723 + AT_rich Low_complexity Low_complexity 1 30 0 191 300 0 0 chr13 16801995 16802045 -85071124 - MIR SINE MIR -10 252 203 368 312 75 23 chr13 16802294 16802467 -85070702 + MLT1J2 LTR MaLR 255 436 -14 318 245 69 58 chr13 16802673 16802795 -85070374 + MIR SINE MIR 30 152 -60 2356 183 14 20 chr13 16804416 16804919 -85068250 + MER89 LTR ERV1 1 500 -59 192 261 0 0 chr13 16805542 16805607 -85067562 + CT-rich Low_complexity Low_complexity 1 65 0 225 94 0 0 chr13 16805619 16805651 -85067518 + (T)n Simple_repeat Simple_repeat 1 32 0 2153 100 4 0 chr13 16807491 16807771 -85065398 + AluSg SINE Alu 17 297 -13 217 281 0 16 chr13 16808452 16808516 -85064653 + L2 LINE L2 3210 3272 0 394 202 25 25 chr13 16808953 16809072 -85064097 - MER103 DNA DNA -25 141 23 1268 218 7 24 chr13 16809297 16809586 -85063583 + MLT1C LTR MaLR 1 284 -183 323 185 9 130 chr13 16809578 16809686 -85063483 - MER4A LTR ERV1 -197 467 373 * 228 111 22 22 chr13 16809740 16809785 -85063384 - MER4A LTR ERV1 -566 98 54 966 185 39 5 chr13 16809804 16810009 -85063160 + MLT1C LTR MaLR 248 459 -8 286 351 177 26 chr13 16810060 16810325 -85062844 + L2 LINE L2 2968 3272 0 2022 130 0 0 chr13 16811591 16811868 -85061301 - AluSx SINE Alu -15 297 21 351 96 0 0 chr13 16811900 16811952 -85061217 + (TG)n Simple_repeat Simple_repeat 2 53 0 2661 166 66 4 chr13 16811967 16812480 -85060689 - L1MB3 LINE L1 -3 6180 5636 201 208 21 0 chr13 16812613 16812661 -85060508 + (TTA)n Simple_repeat Simple_repeat 3 51 0 205 191 48 0 chr13 16813046 16813088 -85060081 - MIR SINE MIR -111 151 108 231 113 19 38 chr13 16813274 16813327 -85059842 + (TA)n Simple_repeat Simple_repeat 1 52 0 664 269 47 0 chr13 16813396 16813567 -85059602 + MIR SINE MIR 78 256 -6 831 258 77 65 chr13 16814119 16814623 -85058546 + LTR33A LTR ERVL 2 511 -12 504 291 105 12 chr13 16815357 16815529 -85057640 - MIR SINE MIR -63 199 12 2054 120 40 0 chr13 16816303 16816603 -85056566 - AluSq SINE Alu -1 312 1 371 310 166 51 chr13 16818048 16818458 -85054711 - L2 LINE L2 -1 3271 2815 186 261 0 0 chr13 16819138 16819184 -85053985 + MIR SINE MIR 171 216 -46 3678 65 43 0 chr13 16819537 16820029 -85053140 - LTR10D LTR ERV1 0 513 1 22 0 0 0 chr13 16820433 16820455 -85052714 + AT_rich Low_complexity Low_complexity 1 22 0 218 255 0 0 chr13 16821487 16821534 -85051635 + MIR SINE MIR 100 146 -116 22 35 0 0 chr13 16821589 16821618 -85051551 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr13 16824205 16824226 -85048943 + (CAA)n Simple_repeat Simple_repeat 2 22 0 209 176 0 20 chr13 16824776 16824827 -85048342 + CT-rich Low_complexity Low_complexity 2 51 0 691 239 171 11 chr13 16826092 16826356 -85046813 - LTR16A LTR ERVL 0 450 145 498 325 86 11 chr13 16826450 16826730 -85046439 + L2 LINE L2 2384 2684 -630 1014 231 37 34 chr13 16826960 16827310 -85045859 - LTR37A LTR ERV1 -58 368 18 361 204 19 46 chr13 16827415 16827523 -85045646 - MER94 DNA DNA -29 105 1 331 252 27 45 chr13 16830030 16830141 -85043028 - L1ME4a LINE L1 -69 6052 5944 446 265 112 19 chr13 16830145 16830360 -85042809 - L1ME4a LINE L1 -254 5867 5633 450 0 0 0 chr13 16830376 16830426 -85042743 + (TG)n Simple_repeat Simple_repeat 2 51 0 249 286 29 14 chr13 16831886 16831956 -85041213 - L2 LINE L2 -11 3261 3191 186 143 0 0 chr13 16831986 16832021 -85041148 + (TAG)n Simple_repeat Simple_repeat 3 37 0 452 254 147 52 chr13 16832021 16832253 -85040916 - MIR SINE MIR 0 262 9 183 307 27 40 chr13 16832294 16832369 -85040800 + MIR SINE MIR 89 162 -100 300 118 0 0 chr13 16833091 16833142 -85040027 + L1MB2 LINE L1 6079 6129 -42 227 196 0 18 chr13 16833707 16833763 -85039406 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 257 77 26 0 chr13 16834750 16834789 -85038380 - MSTD LTR MaLR 0 396 357 504 157 11 0 chr13 16834800 16834889 -85038280 - MLT1A1-int LTR MaLR -1645 90 1 1391 210 8 72 chr13 16834889 16835279 -85037890 - MLT1A1 LTR MaLR 0 365 1 798 199 117 123 chr13 16835352 16835719 -85037450 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 16835792 16835813 -85037356 + AT_rich Low_complexity Low_complexity 1 21 0 404 280 88 39 chr13 16836550 16836732 -85036437 - L2 LINE L2 -4 3309 3119 655 92 0 0 chr13 16837343 16837487 -85035682 + AluSc SINE Alu 195 338 0 292 284 23 0 chr13 16837842 16837930 -85035239 + L1ME LINE L1 5553 5642 -479 1293 274 108 27 chr13 16837945 16838724 -85034445 + L2 LINE L2 2446 3310 -3 744 175 68 178 chr13 16838940 16839095 -85034074 + MLT1A1 LTR MaLR 4 174 -191 1639 119 0 5 chr13 16839095 16839314 -85033855 - AluSg/x SINE Alu -20 290 73 744 175 68 178 chr13 16839314 16839557 -85033612 + MLT1A1 LTR MaLR 174 358 -7 313 259 309 31 chr13 16841432 16841594 -85031575 - MIR SINE MIR -48 214 8 576 295 84 50 chr13 16841630 16841952 -85031217 + MLT1G1 LTR MaLR 47 379 -216 244 314 20 72 chr13 16842089 16842242 -85030927 - MER45C DNA AcHobo -488 465 321 646 257 208 4 chr13 16842245 16842486 -85030683 - MER45C DNA AcHobo -576 377 88 337 206 48 0 chr13 16843368 16843431 -85029738 + MER5A DNA MER1_type 124 189 0 1771 189 0 0 chr13 16843794 16844085 -85029084 - AluJo SINE Alu -19 293 3 292 277 176 34 chr13 16844098 16844246 -85028923 + MIR SINE MIR 53 221 -41 180 307 9 53 chr13 16844272 16844386 -85028783 + MIR SINE MIR 108 216 -46 360 0 0 0 chr13 16845330 16845370 -85027799 + (CA)n Simple_repeat Simple_repeat 2 41 0 3134 179 52 42 chr13 16845998 16846779 -85026390 - L1MB1 LINE L1 -12 6220 5432 1574 224 10 0 chr13 16846780 16847163 -85026006 - L1MB1 LINE L1 -912 5298 4912 1668 217 24 62 chr13 16847171 16847566 -85025603 - L1MB1 LINE L1 -4519 1622 1214 5705 43 22 18 chr13 16847566 16848268 -85024901 + SVA Other Other 665 1372 -14 186 71 0 0 chr13 16848268 16848296 -85024873 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 5705 43 22 18 chr13 16848296 16848307 -85024862 + SVA Other Other 1372 1381 -5 1668 217 24 62 chr13 16848307 16848603 -85024566 - L1MB1 LINE L1 -4927 1214 640 266 314 12 0 chr13 16848604 16848690 -85024479 - L1M3c LINE L1 -5151 990 904 227 286 39 78 chr13 16849167 16849321 -85023848 - L1MB1 LINE L1 -5487 644 497 819 365 69 11 chr13 16849350 16849783 -85023386 - L1MB1 LINE L1 -5683 458 1 2486 91 0 0 chr13 16849957 16850265 -85022904 + AluSc SINE Alu 1 308 -1 358 306 180 27 chr13 16851057 16851279 -85021890 + MIR SINE MIR 5 260 -2 246 174 152 43 chr13 16851274 16851366 -85021803 + L2 LINE L2 3134 3235 -78 * 1790 152 0 4 chr13 16852645 16852914 -85020255 - AluSx SINE Alu -42 270 3 847 248 9 77 chr13 16853250 16853573 -85019596 - L1MC5 LINE L1 -1021 6940 6640 2076 138 0 0 chr13 16853641 16853931 -85019238 - AluSx SINE Alu -22 290 1 499 320 59 41 chr13 16854297 16854684 -85018485 - HAL1b LINE L1 -734 614 221 684 211 26 10 chr13 16854843 16855037 -85018132 + L1MA4A LINE L1 5926 6122 -181 429 228 0 0 chr13 16855041 16855133 -85018036 + L1MA4A LINE L1 6189 6280 -23 2257 102 3 10 chr13 16855184 16855489 -85017680 - AluY SINE Alu -8 303 1 1807 226 51 44 chr13 16856655 16856924 -85016245 + L1MC4 LINE L1 7282 7548 -494 6733 76 5 2 chr13 16856924 16857881 -85015288 + L1PA7 LINE L1 5194 6152 -2 1807 226 51 44 chr13 16857881 16858203 -85014966 + L1MC4 LINE L1 7548 7877 -165 542 253 7 47 chr13 16858203 16858353 -85014816 + MER82 DNA MER2_type 1 144 -509 1217 185 25 126 chr13 16858353 16858758 -85014411 - MLT1A1 LTR MaLR 0 365 2 815 201 0 0 chr13 16858759 16858913 -85014256 + MER82 DNA MER2_type 140 293 -360 492 226 7 15 chr13 16859005 16859142 -85014027 + L1MC4 LINE L1 7907 8042 0 23 33 0 0 chr13 16860389 16860419 -85012750 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 16860494 16860515 -85012654 + AT_rich Low_complexity Low_complexity 1 21 0 197 284 134 0 chr13 16862097 16862164 -85011005 + MIR3 SINE MIR 81 156 -52 208 0 62 0 chr13 16862197 16862229 -85010940 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3225 22 0 0 chr13 16862229 16862599 -85010570 - L1PA3 LINE L1 -18 6137 5768 23 0 0 0 chr13 16863872 16863895 -85009274 + AT_rich Low_complexity Low_complexity 1 23 0 879 311 73 74 chr13 16864300 16864447 -85008722 + L1MEd LINE L1 75 221 -5898 1983 132 10 0 chr13 16864447 16864735 -85008434 - AluSc SINE Alu -18 291 1 879 311 73 74 chr13 16864735 16865058 -85008111 + L1MEd LINE L1 221 543 -5576 2598 153 29 14 chr13 16865058 16865541 -85007628 + L1MB2 LINE L1 5682 6171 0 879 311 73 74 chr13 16865541 16866235 -85006934 + L1MEd LINE L1 543 1239 -4880 333 200 17 0 chr13 16866291 16866351 -85006818 + MER70B LTR ERVL 1 61 -517 312 87 0 0 chr13 16866351 16866397 -85006772 + MADE1 DNA Mariner 1 46 -34 * 2156 213 17 5 chr13 16866396 16866804 -85006365 + MER70A LTR ERVL 60 472 0 323 278 86 35 chr13 16866866 16867121 -85006048 + L1MEd LINE L1 1430 1697 -4613 34 0 0 0 chr13 16867387 16867421 -85005748 + AT_rich Low_complexity Low_complexity 1 34 0 239 264 11 11 chr13 16867438 16867525 -85005644 - L1M4 LINE L1 -3525 2621 2535 1205 279 73 42 chr13 16868612 16869985 -85003184 + L1MDa LINE L1 1811 3242 -3298 699 310 108 23 chr13 16869992 16870379 -85002790 + L1MDa LINE L1 3395 3814 -2726 1418 278 79 30 chr13 16870501 16871196 -85001973 + L1MDa LINE L1 4090 4749 -1791 2401 211 19 64 chr13 16871196 16871837 -85001332 - LTR9 LTR ERV1 0 612 1 1418 278 79 30 chr13 16871837 16872335 -85000834 + L1MDa LINE L1 4749 5437 -1103 777 288 36 25 chr13 16872365 16872643 -85000526 + MLT1G LTR MaLR 10 290 -300 1752 220 65 21 chr13 16872713 16872889 -85000280 - MLT1D LTR MaLR 0 505 338 2021 138 6 13 chr13 16872889 16873201 -84999968 - AluSx SINE Alu -2 310 1 1752 220 65 21 chr13 16873201 16873497 -84999672 - MLT1D LTR MaLR -167 338 12 508 217 52 40 chr13 16873508 16873680 -84999489 + MLT1F LTR MaLR 356 507 -35 443 331 66 8 chr13 16874525 16874782 -84998387 - L3 LINE CR1 -166 1411 1140 413 299 140 62 chr13 16874786 16875251 -84997918 - MLT1J LTR MaLR 0 511 11 1753 127 0 0 chr13 16875311 16875548 -84997621 + AluSx SINE Alu 63 299 -13 428 346 56 5 chr13 16875743 16875957 -84997212 - L3 LINE CR1 -685 892 668 701 294 93 40 chr13 16877703 16878230 -84994939 + MLT1H1 LTR MaLR 1 555 0 407 277 216 28 chr13 16878435 16878648 -84994521 + MIR SINE MIR 10 262 0 228 86 0 0 chr13 16878836 16878871 -84994298 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2495 32 0 3 chr13 16878873 16879157 -84994012 - AluY SINE Alu -28 283 1 585 299 0 0 chr13 16879916 16880050 -84993119 + MER63 DNA MER1_type 1 760 -302 193 292 0 0 chr13 16881399 16881447 -84991722 - MIR SINE MIR -67 141 94 363 310 18 26 chr13 16881618 16881731 -84991438 - MIR SINE MIR -137 125 14 2579 97 11 6 chr13 16881992 16882354 -84990815 - THE1B LTR MaLR 0 364 1 344 22 22 0 chr13 16883009 16883054 -84990115 + (TG)n Simple_repeat Simple_repeat 2 47 0 25 51 0 0 chr13 16884270 16884309 -84988860 + AT_rich Low_complexity Low_complexity 1 39 0 1692 216 39 18 chr13 16884828 16885212 -84987957 - MSTD LTR MaLR -2 394 3 556 200 26 113 chr13 16885445 16885651 -84987518 + LTR37B LTR ERV1 186 358 -110 1517 174 24 24 chr13 16885651 16885939 -84987230 - AluJo SINE Alu -24 288 1 556 200 26 113 chr13 16885939 16886042 -84987127 + LTR37B LTR ERV1 358 468 0 428 272 73 31 chr13 16886476 16886667 -84986502 - MIR SINE MIR -43 219 21 368 348 76 67 chr13 16888419 16888935 -84984234 + L2 LINE L2 2766 3292 -21 1770 156 8 78 chr13 16889328 16889713 -84983456 + MLT1B LTR MaLR 1 358 -32 305 367 61 18 chr13 16890300 16890529 -84982640 + MIR SINE MIR 8 246 -16 552 261 65 62 chr13 16891604 16891864 -84981305 + MLT1H LTR MaLR 226 486 -63 223 286 14 14 chr13 16892783 16892853 -84980316 - MIR SINE MIR 0 262 193 1822 156 0 36 chr13 16893324 16893632 -84979537 + AluJo SINE Alu 1 297 -15 1653 239 90 37 chr13 16893731 16894220 -84978949 + MLT2B1 LTR ERVL 1 515 -5 230 43 29 87 chr13 16894724 16894793 -84978376 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 45 26 110 chr13 16894823 16894978 -84978191 + (TA)n Simple_repeat Simple_repeat 2 143 0 520 137 11 33 chr13 16895005 16895188 -84977981 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 517 7 104 37 chr13 16895183 16895454 -84977715 + (TA)n Simple_repeat Simple_repeat 1 289 0 * 280 254 42 17 chr13 16895519 16895637 -84977532 - L1MEc LINE L1 -4700 1696 1576 * 848 142 90 52 chr13 16895635 16895787 -84977382 - L1MA9 LINE L1 0 6312 6148 216 0 0 0 chr13 16895787 16895811 -84977358 + (TG)n Simple_repeat Simple_repeat 1 24 0 848 142 90 52 chr13 16895811 16895870 -84977299 - L1MA9 LINE L1 -164 6148 6093 249 33 0 0 chr13 16895904 16895934 -84977235 + (TA)n Simple_repeat Simple_repeat 1 30 0 1810 174 15 9 chr13 16895971 16896311 -84976858 - MER47A DNA MER2_type -3 363 22 363 96 0 0 chr13 16896313 16896365 -84976804 + (CA)n Simple_repeat Simple_repeat 2 53 0 230 79 0 26 chr13 16896529 16896567 -84976602 + (CAT)n Simple_repeat Simple_repeat 2 38 0 623 292 68 9 chr13 16896599 16896818 -84976351 + MIR SINE MIR 31 262 0 686 289 63 24 chr13 16896858 16897273 -84975896 - L1MCc LINE L1 -4121 3001 2571 41 0 0 0 chr13 16897312 16897353 -84975816 + AT_rich Low_complexity Low_complexity 1 41 0 16365 114 10 4 chr13 16897485 16900779 -84972390 - L1PA8A LINE L1 0 6446 3151 5522 184 11 33 chr13 16900766 16902826 -84970343 - L1PA8A LINE L1 -4274 2187 1 428 271 66 11 chr13 16902828 16903009 -84970160 - L1MCc LINE L1 -4639 2483 2293 * 5278 168 55 3 chr13 16902997 16903496 -84969673 - L1MA9 LINE L1 0 6312 5840 276 30 0 0 chr13 16903496 16903529 -84969640 + (TG)n Simple_repeat Simple_repeat 1 33 0 5278 168 55 3 chr13 16903529 16904182 -84968987 - L1MA9 LINE L1 -472 5840 5111 600 284 77 61 chr13 16904182 16904748 -84968421 - L1MCc LINE L1 -4805 2317 1761 1819 89 0 4 chr13 16904748 16904983 -84968186 - AluSc SINE Alu -4 305 72 600 284 77 61 chr13 16904983 16905385 -84967784 - L1MCc LINE L1 -5361 1761 1130 229 335 75 62 chr13 16905611 16905984 -84967185 - L1MCc LINE L1 -5965 458 81 2254 114 7 3 chr13 16906153 16906461 -84966708 - AluSc SINE Alu 0 309 1 313 227 209 18 chr13 16906801 16906911 -84966258 - MIR SINE MIR -81 181 51 189 306 46 37 chr13 16906992 16907100 -84966069 - MIR SINE MIR -59 203 95 1837 144 85 0 chr13 16908815 16909134 -84964035 - MER46B DNA MER2_type -14 222 2 2351 100 3 0 chr13 16910314 16910614 -84962555 + AluSx SINE Alu 1 301 -11 208 325 58 58 chr13 16911140 16911294 -84961875 - MIR SINE MIR -56 206 53 750 174 0 0 chr13 16911330 16911451 -84961718 - FLAM_A SINE Alu 0 142 22 2187 199 31 51 chr13 16911509 16912021 -84961148 - MLT1D LTR MaLR -2 503 2 249 277 65 65 chr13 16912292 16912447 -84960722 - MER103 DNA DNA -1 165 11 279 373 78 33 chr13 16913584 16913737 -84959432 - L2 LINE L2 -6 3266 3107 430 222 35 62 chr13 16913973 16914117 -84959052 - MER5B DNA MER1_type -1 177 38 496 276 60 10 chr13 16914300 16914450 -84958719 + MIR SINE MIR 2 153 -64 1825 248 113 4 chr13 16914490 16915020 -84958149 + L1MC4 LINE L1 7467 7995 0 632 288 85 33 chr13 16915848 16916272 -84956897 - L1MC/D LINE L1 -1998 5810 5365 496 284 168 5 chr13 16916485 16916682 -84956487 + MIR SINE MIR 23 251 -11 1644 194 54 44 chr13 16918308 16918694 -84954475 + MLT1B LTR MaLR 1 390 0 212 344 0 0 chr13 16919136 16919200 -84953969 - MIR3 SINE MIR -35 173 110 312 286 150 7 chr13 16919228 16919368 -84953801 + MIR SINE MIR 97 256 -6 1007 181 6 0 chr13 16919746 16919917 -84953252 + FRAM SINE Alu 1 168 -8 2243 99 3 3 chr13 16919917 16920209 -84952960 + AluSc SINE Alu 1 292 -17 332 198 0 12 chr13 16920235 16920316 -84952853 + GA-rich Low_complexity Low_complexity 3 82 0 226 301 27 0 chr13 16920762 16920835 -84952334 - MLT1J LTR MaLR -59 452 378 634 256 160 8 chr13 16920903 16921141 -84952028 - MLT1J LTR MaLR -237 274 1 2307 93 7 0 chr13 16921225 16921515 -84951654 - AluSq SINE Alu -21 292 1 354 23 0 0 chr13 16921919 16921962 -84951207 + (CA)n Simple_repeat Simple_repeat 1 43 0 348 24 0 0 chr13 16921961 16922002 -84951167 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 257 271 86 76 chr13 16922081 16922291 -84950878 - MER102b DNA MER1_type -49 292 81 252 122 0 0 chr13 16922670 16922711 -84950458 + (TG)n Simple_repeat Simple_repeat 1 41 0 181 337 144 10 chr13 16922884 16923086 -84950083 - L2 LINE L2 -531 2783 2555 2128 132 0 0 chr13 16923282 16923578 -84949591 + AluSx SINE Alu 1 296 -16 1137 270 167 22 chr13 16924123 16924579 -84948590 - MLT1G1 LTR MaLR -1 594 73 390 301 66 88 chr13 16924878 16925104 -84948065 + L2 LINE L2 3045 3265 -7 279 312 76 27 chr13 16925997 16926189 -84946980 + MIR SINE MIR 6 208 -54 237 234 117 63 chr13 16926189 16926300 -84946869 + L2 LINE L2 3197 3313 0 227 259 0 17 chr13 16926301 16926359 -84946810 + MIR SINE MIR 204 260 -2 201 304 11 22 chr13 16926366 16926458 -84946711 + (TAG)n Simple_repeat Simple_repeat 1 91 0 1041 153 119 84 chr13 16927203 16927492 -84945677 - MER57A LTR ERV1 0 403 111 1876 140 0 4 chr13 16927500 16927803 -84945366 + AluSx SINE Alu 15 316 0 1760 319 15 33 chr13 16928070 16928218 -84944951 - MER57-int LTR ERV1 -588 6949 6800 1874 179 55 0 chr13 16928218 16928548 -84944621 + MER7A DNA MER2_type 1 346 0 1760 319 15 33 chr13 16928548 16929130 -84944039 - MER57-int LTR ERV1 -737 6800 6232 2228 57 0 24 chr13 16929565 16929862 -84943307 + AluY SINE Alu 1 290 -21 233 29 29 0 chr13 16929862 16929896 -84943273 + (CAAAC)n Simple_repeat Simple_repeat 2 36 0 893 271 73 84 chr13 16930111 16930737 -84942432 - MER57-int LTR ERV1 -780 6207 3930 1527 204 118 40 chr13 16930887 16931343 -84941826 - MER57-int LTR ERV1 -1716 5821 5330 379 308 0 0 chr13 16931769 16931902 -84941267 + (TA)n Simple_repeat Simple_repeat 1 133 0 439 243 33 59 chr13 16933291 16933372 -84939797 - MIR SINE MIR -112 150 73 1863 174 0 10 chr13 16933372 16933671 -84939498 - AluSx SINE Alu -16 296 1 439 243 33 59 chr13 16933671 16933741 -84939428 - MIR SINE MIR -189 73 3 2798 10 0 7 chr13 16934334 16934641 -84938528 - AluY SINE Alu -6 305 1 233 245 0 0 chr13 16935191 16935244 -84937925 - L2 LINE L2 -4 3309 3257 2381 89 3 0 chr13 16936685 16936989 -84936180 + AluY SINE Alu 1 305 -6 255 212 35 88 chr13 16937132 16937207 -84935962 + MIR SINE MIR 130 199 -63 2150 246 25 14 chr13 16937207 16937719 -84935450 - LTR40a LTR ERVL 0 519 2 255 212 35 88 chr13 16937719 16937756 -84935413 + MIR SINE MIR 199 236 -26 2265 115 0 0 chr13 16938569 16938874 -84934295 - AluSx SINE Alu -7 305 1 359 225 166 0 chr13 16939106 16939244 -84933925 - MER5A DNA MER1_type -20 158 4 2347 93 0 0 chr13 16940984 16941284 -84931885 + AluSx SINE Alu 1 300 -12 2415 59 0 29 chr13 16941286 16941592 -84931577 + AluY SINE Alu 3 299 -12 245 109 22 0 chr13 16942356 16942402 -84930767 + (TG)n Simple_repeat Simple_repeat 1 47 0 624 276 126 0 chr13 16942556 16942730 -84930439 + MIR SINE MIR 18 213 -49 267 321 92 18 chr13 16942978 16943087 -84930082 - MIR SINE MIR -126 136 20 29 0 0 0 chr13 16943104 16943133 -84930036 + AT_rich Low_complexity Low_complexity 1 29 0 427 296 70 28 chr13 16943952 16944094 -84929075 + L2 LINE L2 3125 3272 0 619 280 62 36 chr13 16944235 16944542 -84928627 - MER102b DNA MER1_type 0 341 27 225 213 131 0 chr13 16944573 16944634 -84928535 - MIR SINE MIR -142 120 52 205 88 29 0 chr13 16944664 16944698 -84928471 + (TA)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr13 16944709 16944737 -84928432 + AT_rich Low_complexity Low_complexity 1 28 0 1594 55 10 30 chr13 16944890 16945091 -84928078 - MER107 DNA MER1_type 0 197 1 377 225 11 34 chr13 16945209 16945298 -84927871 - MIR SINE MIR -171 91 5 1997 120 28 0 chr13 16945427 16945710 -84927459 + AluSg SINE Alu 1 291 -19 617 179 11 17 chr13 16945732 16945911 -84927258 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 665 171 23 0 chr13 16945946 16946121 -84927048 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr13 16946163 16946183 -84926986 + (CCA)n Simple_repeat Simple_repeat 1 20 0 219 307 0 0 chr13 16946452 16946589 -84926580 + (TG)n Simple_repeat Simple_repeat 2 138 0 480 242 133 117 chr13 16946930 16947314 -84925855 + LTR33 LTR ERVL 82 471 -50 206 100 0 50 chr13 16948303 16948343 -84924826 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 1204 85 13 0 chr13 16949487 16949640 -84923529 - L1PA14 LINE L1 -4 6157 6003 374 275 25 25 chr13 16952429 16952549 -84920620 - MIR SINE MIR 0 262 143 239 346 0 66 chr13 16952548 16952730 -84920439 + L2 LINE L2 2342 2511 -803 * 262 255 98 0 chr13 16952772 16952874 -84920295 + L2 LINE L2 2809 2920 -352 598 348 68 20 chr13 16952922 16953314 -84919855 + L2 LINE L2 2577 2996 -317 292 270 90 36 chr13 16953684 16953795 -84919374 - MIR SINE MIR -123 139 23 1902 173 28 30 chr13 16954221 16954779 -84918390 + MLT2A2 LTR ERVL 2 554 0 387 113 0 0 chr13 16955769 16955831 -84917338 + (CA)n Simple_repeat Simple_repeat 1 62 0 2246 165 24 14 chr13 16956395 16956820 -84916349 + MSTB1 LTR MaLR 1 429 -3 30 69 0 0 chr13 16957845 16957903 -84915266 + AT_rich Low_complexity Low_complexity 1 58 0 2122 84 44 3 chr13 16958546 16958843 -84914326 - L1PB1 LINE L1 0 6151 5843 321 259 6 18 chr13 16959513 16959679 -84913490 + CT-rich Low_complexity Low_complexity 1 164 0 255 367 115 0 chr13 16962330 16962469 -84910700 + L2 LINE L2 2828 2982 -331 1793 185 33 14 chr13 16962510 16962878 -84910291 + THE1C LTR MaLR 1 375 0 9083 131 13 33 chr13 16962884 16964469 -84908700 + THE1C-int LTR MaLR 27 1580 0 2108 146 30 19 chr13 16964469 16964840 -84908329 + THE1C LTR MaLR 1 375 0 187 213 106 0 chr13 16964840 16964887 -84908282 + L2 LINE L2 3011 3062 -251 308 313 97 7 chr13 16965914 16966058 -84907111 + MIR SINE MIR 57 213 -49 236 227 0 0 chr13 16966264 16966308 -84906861 - LTR33 LTR ERVL 0 521 478 804 216 22 5 chr13 16966557 16966742 -84906427 - MER5A DNA MER1_type 0 189 2 3053 164 44 81 chr13 16967255 16967763 -84905406 + L1MC3 LINE L1 6968 7434 -351 1744 129 3 96 chr13 16967763 16967877 -84905292 + AluSx SINE Alu 2 125 -177 228 35 0 0 chr13 16967877 16967906 -84905263 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1744 129 3 96 chr13 16967906 16968123 -84905046 + AluSx SINE Alu 125 302 0 3053 164 44 81 chr13 16968123 16968455 -84904714 + L1MC3 LINE L1 7434 7777 -8 390 21 0 0 chr13 16969419 16969466 -84903703 + (CA)n Simple_repeat Simple_repeat 1 47 0 263 348 107 30 chr13 16969581 16969880 -84903289 - L2 LINE L2 -680 2634 2313 318 146 0 0 chr13 16970180 16970228 -84902941 + L2 LINE L2 3266 3313 0 1985 133 75 20 chr13 16970565 16970910 -84902259 - THE1B LTR MaLR 0 364 1 222 204 20 0 chr13 16972257 16972306 -84900863 - L2 LINE L2 -13 3259 3210 640 283 128 5 chr13 16974389 16974622 -84898547 + MIR SINE MIR 8 248 -14 255 203 0 0 chr13 16977222 16977286 -84895883 + GA-rich Low_complexity Low_complexity 1 64 0 22 56 0 0 chr13 16977932 16977968 -84895201 + AT_rich Low_complexity Low_complexity 1 36 0 328 200 300 9 chr13 16978190 16978300 -84894869 - MIR SINE MIR -33 229 88 334 265 27 7 chr13 16978386 16978533 -84894636 + L1MC/D LINE L1 4456 4605 -1541 967 331 82 39 chr13 16979253 16979766 -84893403 + L2 LINE L2 1326 1860 -1454 820 92 9 0 chr13 16979773 16979882 -84893287 + AluSg/x SINE Alu 189 298 -11 273 303 71 0 chr13 16979884 16979983 -84893186 + L2 LINE L2 1854 1959 -1355 200 208 146 0 chr13 16980146 16980194 -84892975 - MIR SINE MIR -4 258 204 * 1220 284 186 46 chr13 16980177 16981326 -84891843 + L2 LINE L2 1991 3313 0 565 273 103 39 chr13 16981334 16981871 -84891298 + L1MC/D LINE L1 5197 5761 -409 23 33 0 0 chr13 16981926 16981956 -84891213 + AT_rich Low_complexity Low_complexity 1 30 0 1548 265 53 14 chr13 16982080 16982593 -84890576 - MLT1H1 LTR MaLR -6 549 17 198 351 38 8 chr13 16982758 16982889 -84890280 - L2 LINE L2 -1004 2310 2176 36 40 0 0 chr13 16983388 16983438 -84889731 + AT_rich Low_complexity Low_complexity 1 50 0 2311 75 3 47 chr13 16983637 16983958 -84889211 - AluY SINE Alu -4 307 1 378 310 46 56 chr13 16984012 16984341 -84888828 - L1ME3A LINE L1 -214 5956 5629 408 300 125 21 chr13 16984381 16984708 -84888461 - MLT1L LTR MaLR -52 563 203 334 292 33 2 chr13 16984904 16985077 -84888092 - L1ME3A LINE L1 -561 5601 5423 375 306 99 17 chr13 16985086 16985318 -84887851 - L1ME3A LINE L1 -756 5390 5140 691 278 15 93 chr13 16985500 16985770 -84887399 - MIR SINE MIR -13 249 1 228 277 0 0 chr13 16985973 16986020 -84887149 + polypyrimidine Low_complexity Low_complexity 4 50 0 230 363 44 26 chr13 16987478 16987591 -84885578 - L2 LINE L2 -36 3236 3122 2540 71 3 0 chr13 16988676 16988986 -84884183 - AluY SINE Alu 0 311 1 5709 89 3 44 chr13 16992263 16993177 -84879992 - L1PA11 LINE L1 -14 6160 5284 378 316 44 13 chr13 16993251 16993409 -84879760 - MIR SINE MIR 0 262 100 234 292 80 24 chr13 16993532 16993782 -84879387 + L1ME LINE L1 4342 4605 -1541 232 335 92 38 chr13 16993955 16994194 -84878975 - L2 LINE L2 -2607 707 456 24 0 0 0 chr13 16994244 16994268 -84878901 + AT_rich Low_complexity Low_complexity 1 24 0 462 329 59 29 chr13 16994384 16994949 -84878220 + L1ME LINE L1 4904 5545 -576 1748 166 13 23 chr13 16995174 16995475 -84877694 - AluJb SINE Alu -10 302 5 1686 148 3 42 chr13 16995790 16995931 -84877238 + AluSx SINE Alu 1 127 -185 2098 134 20 0 chr13 16995931 16996237 -84876932 + AluSx SINE Alu 1 312 0 1686 148 3 42 chr13 16996237 16996379 -84876790 + AluSx SINE Alu 127 273 -39 861 40 32 8 chr13 16996383 16996508 -84876661 + (GAAA)n Simple_repeat Simple_repeat 1 128 0 26 30 0 0 chr13 16997496 16997529 -84875640 + AT_rich Low_complexity Low_complexity 1 33 0 466 277 95 92 chr13 16998311 16998636 -84874533 - L2 LINE L2 -1 3312 2987 427 304 51 42 chr13 17000191 17000357 -84872812 + MIR SINE MIR 44 214 -48 2349 124 91 8 chr13 17000357 17000752 -84872417 - MSTA LTR MaLR 0 428 1 427 304 51 42 chr13 17000752 17000802 -84872367 + MIR SINE MIR 214 262 0 199 288 75 62 chr13 17000814 17000894 -84872275 - L2 LINE L2 -25 3288 3208 390 354 78 0 chr13 17002420 17002612 -84870557 + MIR SINE MIR 41 247 -15 5813 186 70 12 chr13 17003468 17003827 -84869342 - L1PBa LINE L1 -3302 3560 3223 396 55 0 0 chr13 17003827 17003882 -84869287 + (TA)n Simple_repeat Simple_repeat 1 55 0 5813 186 70 12 chr13 17003882 17005094 -84868075 - L1PBa LINE L1 -3639 3223 1876 3198 156 7 31 chr13 17005095 17006222 -84866947 + L1PB1 LINE L1 4679 5791 -360 490 147 8 31 chr13 17006222 17006351 -84866818 + (TA)n Simple_repeat Simple_repeat 1 126 0 2327 101 14 20 chr13 17006351 17006706 -84866463 + L1PB1 LINE L1 5782 6134 -17 300 299 41 10 chr13 17008019 17008116 -84865053 + L2 LINE L2 3208 3307 -6 197 311 0 0 chr13 17008481 17008526 -84864643 + L2 LINE L2 3255 3299 -14 505 250 8 23 chr13 17009286 17009414 -84863755 + MIR SINE MIR 66 191 -71 1895 161 49 14 chr13 17009445 17009794 -84863375 - MLT1A1 LTR MaLR -2 363 3 281 293 38 45 chr13 17009945 17010078 -84863091 + L2 LINE L2 2439 2570 -744 269 276 109 13 chr13 17013077 17013233 -84859936 - ERVL LTR ERVL -335 5429 5259 467 313 108 11 chr13 17013461 17013729 -84859440 - ERVL LTR ERVL -2462 3302 3009 495 334 72 20 chr13 17014078 17014383 -84858786 - ERVL LTR ERVL -3163 2491 2171 3084 155 44 24 chr13 17014385 17014951 -84858218 + L1MB7 LINE L1 5280 5862 -322 2129 135 3 0 chr13 17014951 17015254 -84857915 + AluSx SINE Alu 1 304 -8 3084 155 44 24 chr13 17015254 17015321 -84857848 + L1MB7 LINE L1 5862 5926 -258 1745 313 50 13 chr13 17015299 17015992 -84857177 - L1MEc LINE L1 -5646 750 32 * 3344 269 48 54 chr13 17015989 17016953 -84856216 - L1MEc LINE L1 -1336 4879 3911 2339 109 0 0 chr13 17016953 17017266 -84855903 - AluSq SINE Alu 0 313 1 3344 269 48 54 chr13 17017266 17019060 -84854109 - L1MEc LINE L1 -2304 3911 2108 1717 142 15 4 chr13 17019060 17019328 -84853841 - AluSx SINE Alu -3 309 39 3344 269 48 54 chr13 17019328 17020696 -84852473 - L1MEc LINE L1 -4107 2108 288 246 83 333 0 chr13 17020704 17020752 -84852417 - L1M1 LINE L1 -5601 1964 1901 497 306 8 0 chr13 17020847 17020971 -84852198 - L2 LINE L2 0 3313 3189 13979 176 52 22 chr13 17022609 17025219 -84847950 + L1MA4A LINE L1 17 2704 -4861 10631 181 36 23 chr13 17025212 17028346 -84844823 + L1MA4A LINE L1 4462 7637 -85 * 2951 153 56 52 chr13 17028346 17028956 -84844213 + LTR9 LTR ERV1 1 612 0 10631 181 36 23 chr13 17028956 17029016 -84844153 + L1MA4A LINE L1 7637 7695 -27 22 0 0 0 chr13 17029030 17029052 -84844117 + AT_rich Low_complexity Low_complexity 1 22 0 2338 70 37 0 chr13 17029102 17029402 -84843767 + AluY SINE Alu 1 311 0 224 363 44 26 chr13 17030487 17030600 -84842569 + L2 LINE L2 3122 3236 -36 228 277 0 0 chr13 17032056 17032103 -84841066 + polypurine Low_complexity Low_complexity 4 50 0 693 278 15 93 chr13 17032306 17032576 -84840593 + MIR SINE MIR 1 249 -13 349 275 133 24 chr13 17032758 17033172 -84839997 + L1ME LINE L1 5140 5601 -561 513 300 125 21 chr13 17033368 17033695 -84839474 + MLT1L LTR MaLR 203 563 -52 241 326 38 8 chr13 17033787 17033919 -84839250 + L1ME LINE L1 5685 5820 -350 2297 75 3 47 chr13 17034118 17034439 -84838730 + AluY SINE Alu 1 307 -4 36 40 0 0 chr13 17034638 17034688 -84838481 + AT_rich Low_complexity Low_complexity 1 50 0 194 351 38 8 chr13 17035187 17035318 -84837851 + L2 LINE L2 2176 2310 -1004 1699 267 53 14 chr13 17035483 17035996 -84837173 + MLT1H1 LTR MaLR 17 549 -6 24 32 0 0 chr13 17036120 17036151 -84837018 + AT_rich Low_complexity Low_complexity 1 31 0 670 273 97 39 chr13 17036206 17036743 -84836426 - L1ME LINE L1 -409 5761 5197 1173 284 186 46 chr13 17036751 17037900 -84835269 - L2 LINE L2 0 3313 1991 202 208 146 0 chr13 17037883 17037931 -84835238 + MIR SINE MIR 204 258 -4 * 269 313 71 0 chr13 17038094 17038193 -84834976 - L2 LINE L2 -1355 1959 1854 811 92 9 0 chr13 17038195 17038304 -84834865 - AluSg/x SINE Alu -11 298 189 1036 310 83 47 chr13 17038311 17038827 -84834342 - L2 LINE L2 -1454 1860 1326 370 265 27 7 chr13 17039547 17039694 -84833475 - L1ME LINE L1 -1541 4605 4456 331 200 300 9 chr13 17039780 17039890 -84833279 + MIR SINE MIR 88 229 -33 22 56 0 0 chr13 17040112 17040148 -84833021 + AT_rich Low_complexity Low_complexity 1 36 0 327 181 0 0 chr13 17040797 17040869 -84832300 + CT-rich Low_complexity Low_complexity 1 72 0 630 266 132 9 chr13 17043469 17043702 -84829467 - MIR SINE MIR -14 248 8 220 204 20 0 chr13 17045785 17045834 -84827335 + L2 LINE L2 3210 3259 -13 1979 133 75 20 chr13 17047185 17047530 -84825639 + THE1B LTR MaLR 1 364 0 319 146 0 0 chr13 17047867 17047915 -84825254 - L2 LINE L2 0 3313 3266 260 348 107 30 chr13 17048215 17048514 -84824655 + L2 LINE L2 2313 2634 -680 390 21 0 0 chr13 17048629 17048676 -84824493 + (TG)n Simple_repeat Simple_repeat 1 47 0 3241 164 44 82 chr13 17049640 17049972 -84823197 - L1MC3 LINE L1 -8 7777 7434 1742 127 3 96 chr13 17049972 17050189 -84822980 - AluSx SINE Alu 0 302 125 228 35 0 0 chr13 17050189 17050218 -84822951 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1742 127 3 96 chr13 17050218 17050332 -84822837 - AluSx SINE Alu -177 125 2 3241 164 44 82 chr13 17050332 17050833 -84822336 - L1MC3 LINE L1 -351 7434 6975 229 259 19 0 chr13 17050833 17050887 -84822282 + LTR64 LTR ERVK 423 477 -81 823 211 22 5 chr13 17051353 17051538 -84821631 + MER5A DNA MER1_type 2 189 0 257 309 122 8 chr13 17051708 17051831 -84821338 + LTR33 LTR ERVL 385 521 0 313 313 97 7 chr13 17052037 17052181 -84820988 - MIR SINE MIR -49 213 57 187 213 106 0 chr13 17053208 17053255 -84819914 - L2 LINE L2 -251 3062 3011 2281 146 30 19 chr13 17053255 17053626 -84819543 - THE1C LTR MaLR 0 375 1 9881 130 12 33 chr13 17053626 17055213 -84817956 - THE1C-int LTR MaLR 0 1580 27 1959 185 33 14 chr13 17055219 17055587 -84817582 - THE1C LTR MaLR 0 375 1 250 367 115 0 chr13 17055628 17055767 -84817402 - L2 LINE L2 -331 2982 2828 321 259 6 18 chr13 17058418 17058584 -84814585 + GA-rich Low_complexity Low_complexity 1 164 0 2282 84 44 3 chr13 17059254 17059551 -84813618 + L1PB1 LINE L1 5843 6151 0 30 69 0 0 chr13 17060194 17060252 -84812917 + AT_rich Low_complexity Low_complexity 1 58 0 2468 165 24 12 chr13 17061277 17061701 -84811468 - MSTB1 LTR MaLR -3 429 1 333 125 0 0 chr13 17062264 17062320 -84810849 + (TG)n Simple_repeat Simple_repeat 1 56 0 2046 173 28 30 chr13 17063310 17063868 -84809301 - MLT2A2 LTR ERVL 0 554 2 287 270 90 36 chr13 17064294 17064405 -84808764 + MIR SINE MIR 23 139 -123 577 332 76 28 chr13 17064775 17065167 -84808002 - L2 LINE L2 -317 2996 2577 260 274 98 0 chr13 17065215 17065317 -84807852 - L2 LINE L2 -352 2920 2809 229 346 0 66 chr13 17065359 17065541 -84807628 - L2 LINE L2 -803 2511 2342 * 361 275 25 25 chr13 17065540 17065660 -84807509 + MIR SINE MIR 143 262 0 1189 92 13 0 chr13 17068449 17068602 -84804567 + L1PA14 LINE L1 6003 6157 -4 183 42 0 0 chr13 17069745 17069769 -84803400 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 498 240 133 117 chr13 17070776 17071160 -84802009 - LTR33 LTR ERVL -50 471 82 219 307 0 0 chr13 17071501 17071638 -84801531 + (CA)n Simple_repeat Simple_repeat 2 138 0 180 0 0 0 chr13 17071907 17071927 -84801242 + (TGG)n Simple_repeat Simple_repeat 1 20 0 665 171 23 0 chr13 17071969 17072144 -84801025 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 617 179 11 17 chr13 17072179 17072358 -84800811 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 1997 120 28 0 chr13 17072380 17072663 -84800506 - AluSg SINE Alu -19 291 1 377 225 11 34 chr13 17072792 17072881 -84800288 + MIR SINE MIR 5 91 -171 1594 55 10 30 chr13 17072999 17073200 -84799969 + MER107 DNA MER1_type 1 197 0 36 70 0 0 chr13 17073353 17073424 -84799745 + AT_rich Low_complexity Low_complexity 1 71 0 225 213 131 0 chr13 17073454 17073515 -84799654 + MIR SINE MIR 52 120 -142 666 283 58 36 chr13 17073546 17073854 -84799315 + MER102b DNA MER1_type 27 341 0 427 296 70 28 chr13 17073995 17074137 -84799032 - L2 LINE L2 0 3272 3125 29 0 0 0 chr13 17074957 17074986 -84798183 + AT_rich Low_complexity Low_complexity 1 29 0 256 314 132 16 chr13 17074991 17075112 -84798057 + MIR SINE MIR 2 136 -126 624 276 126 0 chr13 17075360 17075534 -84797635 - MIR SINE MIR -49 213 18 263 104 21 0 chr13 17075688 17075736 -84797433 + (CA)n Simple_repeat Simple_repeat 1 49 0 2404 62 0 29 chr13 17076500 17076806 -84796363 - AluY SINE Alu -12 299 3 2285 98 0 0 chr13 17076808 17077105 -84796064 - AluSx SINE Alu -15 297 1 346 270 30 0 chr13 17078845 17078945 -84794224 + MER5A DNA MER1_type 4 106 -83 2291 112 0 0 chr13 17079214 17079519 -84793650 + AluSx SINE Alu 1 305 -7 243 221 35 88 chr13 17080332 17080369 -84792800 - MIR SINE MIR -26 236 199 2188 242 25 14 chr13 17080369 17080881 -84792288 + LTR40a LTR ERVL 2 519 0 243 221 35 88 chr13 17080881 17080956 -84792213 - MIR SINE MIR -63 199 130 2364 89 3 0 chr13 17081099 17081401 -84791768 - AluY SINE Alu -8 303 1 233 245 0 0 chr13 17082842 17082895 -84790274 + L2 LINE L2 3257 3309 -4 2885 10 0 0 chr13 17083445 17083755 -84789414 + AluY SINE Alu 1 310 -1 439 243 33 59 chr13 17084357 17084427 -84788742 + MIR SINE MIR 3 73 -189 1866 174 0 10 chr13 17084427 17084725 -84788444 + AluSx SINE Alu 1 295 -17 439 243 33 59 chr13 17084725 17084806 -84788363 + MIR SINE MIR 73 150 -112 379 308 0 0 chr13 17086195 17086328 -84786841 + (TA)n Simple_repeat Simple_repeat 1 133 0 3036 76 0 109 chr13 17087484 17087706 -84785463 + L1PA7 LINE L1 5684 5826 -328 7875 36 6 0 chr13 17087706 17089125 -84784044 + L1PA5 LINE L1 4725 6148 -6 3036 76 0 109 chr13 17089125 17089389 -84783780 + L1PA7 LINE L1 5826 6117 -37 322 299 62 10 chr13 17090755 17090852 -84782317 + MIR SINE MIR 6 107 -155 675 250 13 14 chr13 17090871 17091037 -84782132 + MLT1J2 LTR MaLR 24 218 -270 393 284 134 35 chr13 17091163 17091364 -84781805 + MLT1J2 LTR MaLR 227 447 -3 25 0 0 0 chr13 17091479 17091504 -84781665 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr13 17091519 17091547 -84781622 + (TC)n Simple_repeat Simple_repeat 1 28 0 306 261 59 34 chr13 17091671 17091790 -84781379 + MIR SINE MIR 71 192 -70 2284 200 37 24 chr13 17092653 17093192 -84779977 + L1MD3 LINE L1 7450 7995 0 63 67 0 0 chr13 17093223 17093342 -84779827 + AT_rich Low_complexity Low_complexity 1 119 0 322 295 92 70 chr13 17094381 17094567 -84778602 + HAL1b LINE L1 59 239 -1109 1887 118 0 11 chr13 17094567 17094838 -84778331 + AluSx SINE Alu 40 307 -5 322 295 92 70 chr13 17094838 17095288 -84777881 + HAL1b LINE L1 239 715 -633 1989 140 27 0 chr13 17095288 17095581 -84777588 + AluSx SINE Alu 1 301 -11 322 295 92 70 chr13 17095581 17095669 -84777500 + HAL1b LINE L1 715 800 -548 1304 233 107 49 chr13 17095858 17096561 -84776608 + L1MC5 LINE L1 6529 7281 -680 538 250 47 8 chr13 17096592 17096720 -84776449 + MLT1D LTR MaLR 1 133 -372 295 217 72 0 chr13 17096720 17096803 -84776366 - L2 LINE L2 -2407 907 819 423 218 0 0 chr13 17096805 17096892 -84776277 + MER105 DNA DNA 2 88 -116 197 331 68 53 chr13 17097521 17097654 -84775515 - L2 LINE L2 -15 3257 3123 250 270 220 0 chr13 17098823 17098923 -84774246 - MIR SINE MIR -85 177 56 27 0 0 0 chr13 17099064 17099091 -84774078 + AT_rich Low_complexity Low_complexity 1 27 0 606 235 99 38 chr13 17099772 17099985 -84773184 + MIR SINE MIR 35 260 -2 293 335 31 43 chr13 17100493 17100654 -84772515 - L2 LINE L2 -9 3263 3105 1754 162 4 0 chr13 17100876 17101147 -84772022 + AluSx SINE Alu 6 277 -35 247 276 143 51 chr13 17101299 17101397 -84771772 + MIR SINE MIR 16 122 -86 210 143 0 0 chr13 17102969 17103004 -84770165 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 320 372 54 14 chr13 17103243 17103391 -84769778 - L2 LINE L2 -6 3266 3113 223 396 81 0 chr13 17103493 17103642 -84769527 - L2 LINE L2 -218 3054 2894 2112 109 3 3 chr13 17104234 17104517 -84768652 + AluSx SINE Alu 1 283 -29 285 0 0 27 chr13 17104517 17104554 -84768615 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 362 252 76 34 chr13 17105096 17105215 -84767954 - MIR SINE MIR -72 190 67 388 289 103 33 chr13 17106978 17107220 -84765949 + LTR33 LTR ERVL 178 436 -85 386 19 0 19 chr13 17107220 17107272 -84765897 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 7480 34 0 0 chr13 17107272 17108204 -84764965 - L1PA4 LINE L1 -11 6144 5213 6920 35 6 0 chr13 17108204 17109100 -84764069 + L1P LINE L1 2788 3688 -2458 339 198 12 12 chr13 17109100 17109186 -84763983 + LTR33 LTR ERVL 421 506 -15 235 303 40 10 chr13 17111051 17111150 -84762019 - MIR3 SINE MIR -24 184 83 277 266 14 173 chr13 17111187 17111331 -84761838 + MER5A DNA MER1_type 9 110 -79 2269 102 0 0 chr13 17111331 17111625 -84761544 - AluSg SINE Alu -16 294 1 277 266 14 173 chr13 17111625 17111694 -84761475 + MER5A DNA MER1_type 110 188 -1 1679 192 0 10 chr13 17112212 17112504 -84760665 - AluJo SINE Alu -13 299 11 1509 246 79 78 chr13 17112560 17113273 -84759896 - MER21B LTR ERV1 -125 738 22 351 18 54 0 chr13 17113273 17113329 -84759840 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 222 396 88 11 chr13 17113754 17113845 -84759324 + L2 LINE L2 3147 3244 -28 2452 75 0 3 chr13 17113855 17114160 -84759009 - AluY SINE Alu -7 304 1 24 0 0 0 chr13 17114365 17114389 -84758780 + AT_rich Low_complexity Low_complexity 1 24 0 369 319 28 14 chr13 17114925 17115069 -84758100 - MIR SINE MIR -5 257 112 31 0 0 0 chr13 17115415 17115446 -84757723 + AT_rich Low_complexity Low_complexity 1 31 0 355 246 73 48 chr13 17115474 17115722 -84757447 + L1ME LINE L1 2158 2411 -3985 3109 261 27 37 chr13 17115740 17117712 -84755457 + L1MA6 LINE L1 16 1951 -4098 3983 207 86 7 chr13 17117722 17118931 -84754238 + L1MA6 LINE L1 2440 3743 -2585 684 185 0 0 chr13 17118966 17119085 -84754084 + AluSg/x SINE Alu 183 301 -9 4874 26 2 0 chr13 17119268 17119838 -84753331 - L1PA4 LINE L1 -3 6152 5582 6563 166 37 35 chr13 17119840 17121332 -84751837 + L1MA6 LINE L1 3735 5228 -1100 3979 169 91 18 chr13 17121322 17122285 -84750884 + L1MA6 LINE L1 5449 6482 0 * 1991 276 65 45 chr13 17122383 17123864 -84749305 + L1ME LINE L1 2495 4004 -2211 2336 89 3 6 chr13 17123887 17124201 -84748968 - AluSp SINE Alu 0 313 1 25 0 0 0 chr13 17124257 17124282 -84748887 + AT_rich Low_complexity Low_complexity 1 25 0 239 299 6 19 chr13 17124415 17124572 -84748597 + L1ME LINE L1 4181 4335 -1880 229 100 25 0 chr13 17124574 17124614 -84748555 - MADE1 DNA Mariner -5 75 35 1259 258 80 6 chr13 17124745 17125246 -84747923 + L1ME LINE L1 4875 5412 -803 305 300 11 0 chr13 17125273 17125363 -84747806 - L1MC4 LINE L1 -1339 6703 6613 212 158 0 0 chr13 17125380 17125418 -84747751 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 873 269 26 16 chr13 17125427 17125735 -84747434 + L1ME LINE L1 5464 5774 -457 1376 315 71 41 chr13 17125736 17126784 -84746385 - HERV16 LTR ERVL -1904 3860 2711 1308 317 26 16 chr13 17126850 17127467 -84745702 - HERV16 LTR ERVL -2588 2408 1914 2011 164 45 32 chr13 17127520 17128027 -84745142 + MLT2A2 LTR ERVL 1 520 0 1912 310 71 13 chr13 17128027 17129165 -84744004 - HERV16 LTR ERVL -3124 1872 604 425 355 47 14 chr13 17129424 17129720 -84743449 - HERV16 LTR ERVL -4676 320 15 752 316 33 28 chr13 17129722 17130117 -84743052 - LTR16B LTR ERVL -2 462 66 1866 136 23 0 chr13 17132831 17133133 -84740036 - MER7A DNA MER2_type 0 346 40 526 286 79 31 chr13 17134606 17134833 -84738336 + MIR SINE MIR 20 257 -5 321 68 0 0 chr13 17136081 17136125 -84737044 + (TG)n Simple_repeat Simple_repeat 1 44 0 2132 138 0 0 chr13 17137271 17137582 -84735587 + AluSx SINE Alu 1 311 -1 221 196 18 0 chr13 17137610 17137666 -84735503 + (TA)n Simple_repeat Simple_repeat 1 57 0 1978 205 94 14 chr13 17137872 17138374 -84734795 - MLT1F LTR MaLR 0 542 1 1448 143 9 5 chr13 17141251 17141474 -84731695 + AluSx SINE Alu 1 224 -88 180 0 0 0 chr13 17141485 17141505 -84731664 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1090 207 132 35 chr13 17141510 17141911 -84731258 - MLT1C LTR MaLR -27 440 1 995 200 45 76 chr13 17142213 17142737 -84730432 + MER34B LTR ERV1 4 585 0 287 273 172 50 chr13 17143456 17143654 -84729515 + MIR SINE MIR 3 224 -38 182 273 55 82 chr13 17143708 17143818 -84729351 - MIR SINE MIR -147 115 9 209 327 77 39 chr13 17144154 17144258 -84728911 - L2 LINE L2 -32 3240 3133 778 213 24 0 chr13 17144579 17144743 -84728426 - MER5A DNA MER1_type -5 184 17 1767 130 70 12 chr13 17144743 17145073 -84728096 - THE1C LTR MaLR 0 375 27 1315 187 101 1 chr13 17147600 17147951 -84725218 - MLT2C2 LTR ERVL 0 397 3 2070 113 7 29 chr13 17147978 17148288 -84724881 + AluSq SINE Alu 11 313 0 21 36 0 0 chr13 17148489 17148517 -84724652 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 17148561 17148587 -84724582 + AT_rich Low_complexity Low_complexity 1 26 0 627 278 46 85 chr13 17148602 17149167 -84724002 + L1ME LINE L1 13 555 -5515 1793 215 61 8 chr13 17149641 17150115 -84723054 - Charlie1b DNA MER1_type -1 522 24 560 329 82 16 chr13 17150265 17150581 -84722588 - ERVL LTR ERVL -1914 3850 3514 438 324 42 14 chr13 17150664 17150880 -84722289 - ERVL LTR ERVL -2375 3389 3168 312 333 33 18 chr13 17150921 17151134 -84722035 - ERVL LTR ERVL -1981 3015 2788 362 264 47 47 chr13 17151141 17151289 -84721880 - MLT1F LTR MaLR -7 535 388 238 329 27 67 chr13 17151419 17151492 -84721677 - MLT1F LTR MaLR -362 228 162 2854 82 0 6 chr13 17151492 17151858 -84721311 + THE1B LTR MaLR 1 364 0 238 329 27 67 chr13 17151858 17151933 -84721236 - MLT1F LTR MaLR -428 162 86 410 325 21 16 chr13 17152424 17152618 -84720551 - ERVL LTR ERVL -3427 2337 2143 440 207 33 50 chr13 17152675 17152796 -84720373 - MLT1F LTR MaLR -8 534 416 232 284 23 0 chr13 17154371 17154459 -84718710 + (TA)n Simple_repeat Simple_repeat 2 91 0 736 246 77 40 chr13 17155923 17156171 -84716998 - MIR SINE MIR 0 262 6 38 22 0 0 chr13 17156554 17156599 -84716570 + AT_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr13 17159246 17159270 -84713899 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1248 237 58 40 chr13 17159492 17159939 -84713230 - MLT1C LTR MaLR -7 460 6 2725 217 103 23 chr13 17160106 17160147 -84713022 - MER21B LTR ERV1 -15 848 812 2271 82 11 61 chr13 17160147 17160524 -84712645 - L1PB2 LINE L1 0 6151 5794 2725 217 103 23 chr13 17160524 17161252 -84711917 - MER21B LTR ERV1 -51 812 18 410 224 0 0 chr13 17161276 17161352 -84711817 - MER21B LTR ERV1 -776 87 12 527 321 75 25 chr13 17161548 17161828 -84711341 + HAL1 LINE L1 1134 1427 -1080 354 104 15 0 chr13 17161834 17161885 -84711284 + L1PA4 LINE L1 5983 6037 -118 428 105 0 105 chr13 17161885 17161980 -84711189 + L1PA10 LINE L1 6084 6168 0 354 104 15 0 chr13 17161980 17161995 -84711174 + L1PA4 LINE L1 6037 6050 -105 1175 234 127 15 chr13 17162122 17162643 -84710526 + MER114 LTR ERV 70 648 0 22 56 0 0 chr13 17163082 17163118 -84710051 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr13 17163136 17163159 -84710010 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 1724 195 0 16 chr13 17163159 17163467 -84709702 + AluJo SINE Alu 4 306 -6 1803 166 43 10 chr13 17167407 17167772 -84705397 + AluSx SINE Alu 1 375 0 327 236 22 22 chr13 17168594 17168683 -84704486 - MIR SINE MIR -117 145 57 508 315 76 0 chr13 17169607 17169791 -84703378 - MIR SINE MIR -8 254 57 847 255 172 45 chr13 17170751 17171147 -84702022 - L2 LINE L2 0 3313 2868 523 280 46 6 chr13 17171824 17171999 -84701170 + MIR SINE MIR 81 262 0 195 352 130 9 chr13 17172094 17172202 -84700967 - L2 LINE L2 -5 3267 3147 303 294 39 0 chr13 17172771 17172873 -84700296 - MLT1H LTR MaLR 0 549 444 384 240 157 30 chr13 17173574 17173761 -84699408 - MIR SINE MIR 0 262 59 2128 117 3 23 chr13 17174633 17174942 -84698227 + AluSg SINE Alu 1 303 -7 2225 76 10 10 chr13 17175803 17176094 -84697075 - AluY SINE Alu -20 291 1 182 233 0 67 chr13 17176138 17176198 -84696971 + L3 LINE CR1 1377 1432 -145 584 188 8 0 chr13 17176383 17176511 -84696658 + L1MB3 LINE L1 4992 5120 -1026 1041 144 26 0 chr13 17176532 17176726 -84696443 + L1MB3 LINE L1 5949 6147 -36 4415 177 14 13 chr13 17176781 17177023 -84696146 + L1MB3 LINE L1 5173 5413 -770 1856 115 118 38 chr13 17177023 17177370 -84695799 + THE1C LTR MaLR 1 375 0 4415 177 14 13 chr13 17177370 17178137 -84695032 + L1MB3 LINE L1 5413 6183 0 2122 152 0 0 chr13 17178202 17178505 -84694664 + AluSx SINE Alu 1 303 -9 1401 220 90 48 chr13 17178911 17179449 -84693720 + MLT1F1 LTR MaLR 1 567 0 727 263 157 27 chr13 17181589 17181920 -84691249 + L2 LINE L2 2940 3313 0 298 252 79 24 chr13 17182757 17182884 -84690285 + LTR16A1 LTR ERVL 321 454 -3 241 233 11 22 chr13 17182917 17183007 -84690162 + A-rich Low_complexity Low_complexity 3 91 0 447 251 57 43 chr13 17183323 17183534 -84689635 - L1MC/D LINE L1 -1992 5816 5603 280 248 168 0 chr13 17183542 17183643 -84689526 + MER69A DNA AcHobo 8 125 -52 310 403 29 21 chr13 17183736 17183974 -84689195 - L1MC/D LINE L1 -526 5595 5356 880 249 169 26 chr13 17184042 17184613 -84688556 - L2 LINE L2 -1 3312 2662 35530 35 25 1 chr13 17185523 17190995 -84682174 - L1HS LINE L1 0 6155 551 1774 191 7 3 chr13 17191846 17192283 -84680886 + AluSx SINE Alu 1 438 0 1772 185 60 32 chr13 17194288 17194822 -84678347 + MLT2A2 LTR ERVL 1 554 0 386 167 115 21 chr13 17195166 17195262 -84677907 - L2 LINE L2 0 3272 3168 1659 166 10 28 chr13 17196644 17196934 -84676235 + AluJb SINE Alu 16 300 -12 467 318 45 0 chr13 17197177 17197309 -84675860 - L2 LINE L2 0 3313 3176 404 256 103 0 chr13 17197325 17197442 -84675727 - MIR SINE MIR -45 217 89 251 299 0 15 chr13 17198823 17198890 -84674279 + MIR SINE MIR 32 97 -111 721 274 59 35 chr13 17199094 17199433 -84673736 + MLT1I LTR MaLR 63 409 0 210 322 101 20 chr13 17199861 17200010 -84673159 - L2 LINE L2 -38 3275 3115 1685 150 49 36 chr13 17200571 17200877 -84672292 + AluSg SINE Alu 1 310 0 1459 184 43 15 chr13 17201326 17201652 -84671517 - MER2 DNA MER2_type -9 336 2 2183 86 0 67 chr13 17201825 17202140 -84671029 - AluY SINE Alu -17 294 1 226 337 20 0 chr13 17202157 17202255 -84670914 + HAL1b LINE L1 798 897 -451 213 360 20 7 chr13 17202739 17202886 -84670283 + CT-rich Low_complexity Low_complexity 5 153 0 * 476 228 0 78 chr13 17202875 17203068 -84670101 + C-rich Low_complexity Low_complexity 3 180 0 2220 113 3 0 chr13 17204173 17204466 -84668703 + AluSx SINE Alu 1 294 -18 398 248 73 29 chr13 17204470 17204607 -84668562 - MIR SINE MIR -1 261 119 331 361 49 0 chr13 17204707 17204829 -84668340 - L2 LINE L2 -1 3271 3144 3428 206 6 57 chr13 17205185 17205578 -84667591 - L1MB5 LINE L1 -14 6160 5749 1985 112 0 11 chr13 17205578 17205847 -84667322 - AluSx SINE Alu -30 282 17 3428 206 6 57 chr13 17205847 17206337 -84666832 - L1MB5 LINE L1 -425 5749 5322 432 200 24 0 chr13 17207094 17207219 -84665950 + (TA)n Simple_repeat Simple_repeat 2 129 0 329 297 27 70 chr13 17208464 17208649 -84664520 + L1ME4a LINE L1 5295 5471 -2337 387 270 114 44 chr13 17208681 17208824 -84664345 + L1ME4a LINE L1 5534 5665 -456 2093 154 0 0 chr13 17208824 17209135 -84664034 + AluSx SINE Alu 1 311 -1 387 270 114 44 chr13 17209135 17209358 -84663811 + L1ME4a LINE L1 5665 5926 -195 22 0 0 0 chr13 17209408 17209430 -84663739 + AT_rich Low_complexity Low_complexity 1 22 0 547 181 19 0 chr13 17210301 17210406 -84662763 + FLAM_C SINE Alu 1 107 -36 15326 67 6 2 chr13 17210406 17212588 -84660581 + L1PA5 LINE L1 1398 3587 -2559 13841 55 14 1 chr13 17212714 17215292 -84657877 + L1PA5 LINE L1 3545 6153 -1 2070 133 10 10 chr13 17215304 17215606 -84657563 + AluSq SINE Alu 1 302 -11 532 163 16 101 chr13 17215813 17215942 -84657227 + FRAM SINE Alu 1 117 -59 189 121 0 0 chr13 17216336 17216369 -84656800 + (GA)n Simple_repeat Simple_repeat 2 34 0 297 276 67 0 chr13 17218744 17218849 -84654320 - MIR3 SINE MIR -4 204 93 3910 153 26 7 chr13 17219681 17219919 -84653250 - Tigger1 DNA MER2_type 0 2418 2186 180 0 0 0 chr13 17219919 17219939 -84653230 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 3910 153 26 7 chr13 17219939 17220015 -84653154 - Tigger1 DNA MER2_type -232 2186 2113 2452 77 0 13 chr13 17220015 17220328 -84652841 - AluY SINE Alu -2 309 1 3910 153 26 7 chr13 17220328 17220731 -84652438 - Tigger1 DNA MER2_type -305 2113 1686 5416 162 30 2 chr13 17220734 17221711 -84651458 - Tigger1 DNA MER2_type -1410 1008 5 479 266 31 8 chr13 17221741 17221869 -84651300 + L2 LINE L2 3134 3264 -8 213 94 0 0 chr13 17221896 17221928 -84651241 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 328 263 32 11 chr13 17223596 17223691 -84649478 + L2 LINE L2 2685 2781 -533 1118 297 96 8 chr13 17223781 17224265 -84648904 + L2 LINE L2 2782 3313 0 1970 121 65 39 chr13 17224288 17224643 -84648526 - THE1B LTR MaLR 0 364 1 242 347 31 20 chr13 17225186 17225284 -84647885 - MER91A DNA MER1_type 0 196 98 248 342 0 0 chr13 17225880 17225959 -84647210 - MIR SINE MIR -16 246 168 219 333 21 21 chr13 17226508 17226601 -84646568 - L3 LINE CR1 -1415 162 70 437 195 0 0 chr13 17226686 17226768 -84646401 - AluJ/FRAM SINE Alu -5 307 226 * 758 174 194 7 chr13 17226764 17226919 -84646250 - AluSg SINE Alu -126 184 1 327 308 42 17 chr13 17227057 17227177 -84645992 - L2 LINE L2 -1 3312 3190 316 244 44 22 chr13 17227764 17227854 -84645315 - L2 LINE L2 0 3313 3222 361 286 8 17 chr13 17230539 17230658 -84642511 - L2 LINE L2 -5 3308 3191 371 187 11 11 chr13 17230772 17230863 -84642306 - L1PA16 LINE L1 0 6166 6076 33 0 0 0 chr13 17230946 17230979 -84642190 + AT_rich Low_complexity Low_complexity 1 33 0 1483 148 29 0 chr13 17231361 17231638 -84641531 + L1MA8 LINE L1 6004 6288 -3 217 354 63 25 chr13 17232005 17232084 -84641085 + L3b LINE CR1 1490 1571 -12 868 236 85 69 chr13 17233049 17233413 -84639756 - MLT1A2 LTR MaLR -4 370 1 314 303 9 0 chr13 17234038 17234147 -84639022 - MER103 DNA DNA -49 117 8 293 241 65 15 chr13 17234168 17234308 -84638861 + MLT1J2 LTR MaLR 1 146 -263 456 212 51 6 chr13 17234393 17234560 -84638609 + MLT1J2 LTR MaLR 274 405 -4 756 225 70 20 chr13 17234658 17234858 -84638311 - MER58A DNA MER1_type -13 211 2 984 232 82 0 chr13 17236725 17236992 -84636177 - MER33 DNA MER1_type 0 324 36 404 227 34 0 chr13 17237052 17237140 -84636029 - MIR SINE MIR -90 172 82 3783 101 2 5 chr13 17237185 17237323 -84635846 - L1PA12 LINE L1 -2 6166 6029 2584 91 11 0 chr13 17237323 17237674 -84635495 + THE1A LTR MaLR 1 355 0 11650 88 15 2 chr13 17237674 17239233 -84633936 + THE1A-int LTR MaLR 1 1580 0 2850 68 3 0 chr13 17239235 17239587 -84633582 + THE1A LTR MaLR 3 355 0 3783 101 2 5 chr13 17239587 17239997 -84633172 - L1PA12 LINE L1 -139 6029 5616 337 306 198 51 chr13 17240122 17240495 -84632674 - L3 LINE CR1 -363 1214 787 2039 123 3 27 chr13 17240660 17240960 -84632209 + AluSx SINE Alu 1 293 -19 638 314 96 17 chr13 17241010 17241363 -84631806 + MLT1I LTR MaLR 3 383 -26 1560 171 62 14 chr13 17243605 17243880 -84629289 - AluJo SINE Alu -20 292 5 384 276 0 35 chr13 17245126 17245242 -84627927 + MER81 DNA DNA 1 112 -2 197 319 15 74 chr13 17245245 17245380 -84627789 + MIR SINE MIR 14 140 -122 452 281 8 0 chr13 17245553 17245681 -84627488 + MER94 DNA DNA 1 129 -5 2219 99 0 23 chr13 17245940 17246242 -84626927 + AluY SINE Alu 1 295 -16 394 53 0 18 chr13 17246373 17246430 -84626739 - MADE1 DNA Mariner 0 80 25 2032 141 0 0 chr13 17246432 17246716 -84626453 + AluSx SINE Alu 3 286 -26 307 140 0 0 chr13 17246816 17246873 -84626296 + Alu SINE Alu 244 300 0 2261 110 0 0 chr13 17247056 17247356 -84625813 - AluSg SINE Alu -10 300 1 513 44 0 0 chr13 17248728 17248796 -84624373 + (TCTCCC)n Simple_repeat Simple_repeat 5 72 0 3735 75 18 77 chr13 17249356 17250084 -84623085 + SVA Other Other 439 1123 -263 595 311 19 19 chr13 17250849 17251058 -84622111 - MIR SINE MIR -41 221 13 1091 127 0 0 chr13 17251426 17251599 -84621570 - L1MA6 LINE L1 0 6300 6128 485 161 27 45 chr13 17251599 17251711 -84621458 + Tigger3(Golem) DNA MER2_type 2 111 -2918 * 3417 145 61 29 chr13 17251708 17251788 -84621381 + Tigger3(Golem) DNA MER2_type 2284 2360 -668 2256 110 0 0 chr13 17251788 17252087 -84621082 + AluSx SINE Alu 1 299 -13 3417 145 61 29 chr13 17252087 17252728 -84620441 + Tigger3(Golem) DNA MER2_type 2360 3028 0 4381 166 5 14 chr13 17252728 17253983 -84619186 - L1MA6 LINE L1 -170 6130 4885 249 186 0 0 chr13 17255578 17255621 -84617548 + MLT1D LTR MaLR 1 43 -462 2176 81 0 0 chr13 17255622 17255883 -84617286 + AluSg SINE Alu 1 261 -49 947 158 0 23 chr13 17255915 17256092 -84617077 + MLT1D LTR MaLR 333 505 0 269 282 120 43 chr13 17257481 17257598 -84615571 + MIR SINE MIR 25 150 -112 474 241 97 7 chr13 17258532 17258677 -84614492 + LTR16A LTR ERVL 293 450 0 776 320 61 28 chr13 17258689 17259148 -84614021 - MARNA DNA Mariner -93 493 20 223 330 68 0 chr13 17259340 17259428 -84613741 + L2 LINE L2 3171 3264 -8 189 0 0 0 chr13 17259494 17259515 -84613654 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 2702 165 19 2 chr13 17260025 17260444 -84612725 - MSTB LTR MaLR 0 426 1 4565 37 6 0 chr13 17260887 17261406 -84611763 + L1PA4 LINE L1 5634 6155 0 262 357 62 40 chr13 17262408 17262632 -84610537 - MIR SINE MIR -14 248 20 505 281 107 29 chr13 17262949 17263249 -84609920 + L1ME4a LINE L1 5309 5631 -490 318 319 42 25 chr13 17263250 17263491 -84609678 + L1ME4a LINE L1 5682 5926 -195 415 365 115 21 chr13 17263919 17264302 -84608867 - L2 LINE L2 -16 3256 2838 254 342 49 49 chr13 17264538 17264781 -84608388 - L2 LINE L2 -479 2835 2593 216 372 102 14 chr13 17265009 17265380 -84607789 - L2 LINE L2 -1003 2311 1908 188 271 94 0 chr13 17269019 17269104 -84604065 - MIR SINE MIR -8 254 162 1282 234 58 58 chr13 17270092 17270541 -84602628 + MLT1D LTR MaLR 5 453 -52 206 121 0 0 chr13 17271948 17271981 -84601188 + (A)n Simple_repeat Simple_repeat 1 33 0 8727 162 15 12 chr13 17271983 17274485 -84598684 + L1PB1 LINE L1 3644 6149 -2 5312 156 16 49 chr13 17274783 17275835 -84597334 + L1PB4 LINE L1 4782 5867 -289 327 49 0 0 chr13 17275835 17275876 -84597293 + (CA)n Simple_repeat Simple_repeat 2 42 0 2148 221 6 30 chr13 17275876 17276343 -84596826 + LTR22A LTR ERVK 3 458 0 5312 156 16 49 chr13 17276343 17276696 -84596473 + L1PB4 LINE L1 5865 6145 -11 6823 129 19 13 chr13 17276872 17278481 -84594688 + L1MA2 LINE L1 4677 6297 -7 2424 70 3 0 chr13 17278481 17278779 -84594390 - AluY SINE Alu -12 299 1 26 30 0 0 chr13 17278779 17278812 -84594357 + AT_rich Low_complexity Low_complexity 1 33 0 452 231 163 7 chr13 17281458 17281605 -84591564 - MIR SINE MIR -14 248 79 216 67 0 0 chr13 17281652 17281682 -84591487 + (TC)n Simple_repeat Simple_repeat 1 30 0 1098 178 20 15 chr13 17281698 17281895 -84591274 + MER3 DNA MER1_type 2 199 -10 273 239 0 14 chr13 17281963 17282034 -84591135 - MIR SINE MIR -71 191 122 1263 152 17 46 chr13 17282046 17282283 -84590886 + MSTB1 LTR MaLR 1 230 -202 1086 145 17 0 chr13 17283145 17283317 -84589852 + MSTB1 LTR MaLR 256 430 -2 316 260 94 10 chr13 17283458 17283554 -84589615 + L2 LINE L2 3210 3313 0 281 351 264 5 chr13 17283582 17283790 -84589379 + L3b LINE CR1 1269 1530 -53 310 279 90 0 chr13 17284569 17284691 -84588478 - LTR33A LTR ERVL 0 523 391 500 306 77 25 chr13 17284793 17285028 -84588141 - LTR33A LTR ERVL -276 247 1 190 246 115 0 chr13 17285167 17285228 -84587941 + L2 LINE L2 3205 3272 0 1678 167 0 46 chr13 17285416 17285739 -84587430 + AluJo SINE Alu 1 308 -4 2207 99 6 37 chr13 17286077 17286399 -84586770 + AluSx SINE Alu 1 312 0 254 264 0 0 chr13 17286705 17286777 -84586392 + L1MC/D LINE L1 5680 5751 -2057 276 354 10 10 chr13 17287448 17287544 -84585625 + L2 LINE L2 3177 3272 0 2325 170 39 30 chr13 17287732 17288192 -84584977 + MLT1C LTR MaLR 1 464 -3 247 322 67 11 chr13 17288755 17288845 -84584324 - L2 LINE L2 -25 3247 3153 29 78 0 0 chr13 17290858 17290922 -84582247 + AT_rich Low_complexity Low_complexity 1 64 0 207 0 0 0 chr13 17291219 17291242 -84581927 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 212 259 58 72 chr13 17291248 17291387 -84581782 - L2 LINE L2 -19 3294 3158 21 36 0 0 chr13 17292023 17292051 -84581118 + AT_rich Low_complexity Low_complexity 1 28 0 219 325 214 8 chr13 17292950 17293067 -84580102 + L2 LINE L2 3124 3264 -8 2330 96 0 3 chr13 17293947 17294248 -84578921 + AluSg SINE Alu 2 301 -9 1353 53 12 16 chr13 17294302 17294551 -84578618 + (GAAA)n Simple_repeat Simple_repeat 4 249 0 3160 222 25 5 chr13 17294926 17295565 -84577604 + MER82 DNA MER2_type 1 652 -1 25 0 0 0 chr13 17296195 17296220 -84576949 + AT_rich Low_complexity Low_complexity 1 25 0 204 247 156 0 chr13 17297811 17297888 -84575281 + L2 LINE L2 2305 2393 -921 278 138 17 0 chr13 17298035 17298093 -84575076 + GA-rich Low_complexity Low_complexity 4 62 0 216 277 24 72 chr13 17298406 17298489 -84574680 + MIR SINE MIR 109 187 -75 1219 258 105 46 chr13 17298664 17299400 -84573769 + L2 LINE L2 2527 3313 0 1687 173 23 13 chr13 17299850 17300151 -84573018 - AluJo SINE Alu -8 304 1 22 56 0 0 chr13 17300219 17300255 -84572914 + AT_rich Low_complexity Low_complexity 1 36 0 303 229 24 0 chr13 17300801 17300884 -84572285 + L1ME LINE L1 5670 5754 -408 595 304 23 37 chr13 17302020 17302234 -84570935 + MIR SINE MIR 52 262 0 211 229 0 0 chr13 17302234 17302282 -84570887 + (TTA)n Simple_repeat Simple_repeat 2 49 0 339 273 100 0 chr13 17302486 17302596 -84570573 - MIR SINE MIR -1 261 141 2531 123 83 5 chr13 17302732 17303129 -84570040 + MSTA LTR MaLR 1 428 0 710 148 0 9 chr13 17303659 17303767 -84569402 + AluSq/x SINE Alu 2 108 -205 446 313 79 0 chr13 17304269 17304478 -84568691 + L1ME LINE L1 5592 5818 -303 195 227 0 0 chr13 17304594 17304638 -84568531 + L2 LINE L2 3021 3064 -208 190 222 62 74 chr13 17304781 17304862 -84568307 + MIR SINE MIR 183 262 0 1966 134 13 19 chr13 17305162 17305476 -84567693 + AluSx SINE Alu 1 312 0 1593 234 103 39 chr13 17307366 17307850 -84565319 - MLT1F LTR MaLR -19 523 9 1225 199 42 94 chr13 17307943 17308289 -84564880 + MER39 LTR ERV1 68 589 -118 2051 119 25 0 chr13 17308289 17308575 -84564594 + AluSp SINE Alu 1 293 -20 1225 199 42 94 chr13 17308575 17308651 -84564518 + MER39 LTR ERV1 589 667 -40 1419 196 122 9 chr13 17308763 17308910 -84564259 + MLT1A2 LTR MaLR 1 130 -244 252 0 0 0 chr13 17308910 17308938 -84564231 + (TC)n Simple_repeat Simple_repeat 1 28 0 1419 196 122 9 chr13 17308938 17309126 -84564043 + MLT1A2 LTR MaLR 130 374 0 207 264 0 19 chr13 17309387 17309440 -84563729 + GA-rich Low_complexity Low_complexity 128 179 0 2468 201 52 89 chr13 17310191 17311075 -84562094 + MER69 DNA AcHobo 1451 2287 -239 2144 104 7 20 chr13 17311075 17311374 -84561795 - AluSg SINE Alu -15 295 1 2468 201 52 89 chr13 17311374 17311606 -84561563 + MER69 DNA AcHobo 2287 2526 0 230 255 176 0 chr13 17311642 17311744 -84561425 - L2 LINE L2 -1262 2052 1933 238 0 0 0 chr13 17311776 17311804 -84561365 + THE1C LTR MaLR 1 28 -347 320 296 18 11 chr13 17313932 17314069 -84559100 - MLT1H1 LTR MaLR -2 565 429 710 291 54 22 chr13 17314365 17314970 -84558199 - L1ME LINE L1 -415 5681 5056 572 263 78 61 chr13 17315021 17315681 -84557488 - L1ME LINE L1 -4748 1513 807 189 368 23 0 chr13 17316601 17316688 -84556481 - L2 LINE L2 -962 2352 2264 423 183 0 0 chr13 17316965 17317047 -84556122 + (TG)n Simple_repeat Simple_repeat 1 82 0 345 275 183 0 chr13 17317237 17317368 -84555801 - MIR3 SINE MIR -12 196 42 240 333 36 29 chr13 17318057 17318195 -84554974 + MIR3 SINE MIR 7 145 -63 1455 214 43 6 chr13 17318205 17318556 -84554613 + MLT1B LTR MaLR 8 371 -19 24 0 0 0 chr13 17319683 17319707 -84553462 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 17320679 17320702 -84552467 + AT_rich Low_complexity Low_complexity 1 23 0 4336 82 2 36 chr13 17320706 17321349 -84551820 - L1PB1 LINE L1 -6 6145 5525 406 306 132 4 chr13 17321821 17322056 -84551113 - L1ME LINE L1 -299 5822 5558 860 268 121 14 chr13 17322625 17322980 -84550189 - LTR16C LTR ERVL 0 491 99 352 287 33 8 chr13 17325357 17325479 -84547690 + L1ME LINE L1 5588 5712 -409 232 178 100 56 chr13 17325997 17326087 -84547082 - Charlie4 DNA MER1_type -587 1374 1281 3618 111 7 16 chr13 17326391 17326875 -84546294 + MER41A LTR ERV1 3 483 -71 2257 102 0 3 chr13 17326875 17327180 -84545989 - AluSq SINE Alu -9 304 1 3618 111 7 16 chr13 17327180 17327252 -84545917 + MER41A LTR ERV1 483 554 0 2132 123 0 49 chr13 17327719 17328045 -84545124 - AluSg SINE Alu 0 310 1 204 125 0 0 chr13 17329675 17329707 -84543462 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2004 212 114 19 chr13 17330399 17330574 -84542595 + L1MC4a LINE L1 7166 7323 -485 1723 115 17 0 chr13 17330574 17330836 -84542333 + AluSx SINE Alu 47 312 0 2004 212 114 19 chr13 17330836 17331244 -84541925 + L1MC4a LINE L1 7323 7806 -2 281 227 176 42 chr13 17333543 17333662 -84539507 - MIR3 SINE MIR -64 144 10 4210 80 2 0 chr13 17333828 17334381 -84538788 - MER41A LTR ERV1 0 554 1 1988 147 24 37 chr13 17334918 17335298 -84537871 - THE1C LTR MaLR 0 375 1 363 179 60 40 chr13 17335756 17335977 -84537192 - MER34B LTR ERV1 -5 537 355 2839 122 7 91 chr13 17336140 17336756 -84536413 + MER4B LTR ERV1 1 564 -46 368 169 22 45 chr13 17336890 17336979 -84536190 - MER34C LTR ERV1 -459 126 40 3425 169 49 25 chr13 17337180 17337890 -84535279 + LTR8A LTR ERV1 1 727 0 311 350 10 0 chr13 17338739 17338836 -84534333 + MIR3 SINE MIR 110 207 -1 234 257 29 100 chr13 17340090 17340230 -84532939 - L2 LINE L2 -202 3070 2941 304 333 79 8 chr13 17340784 17340910 -84532259 - L2 LINE L2 -196 3076 2942 628 225 7 20 chr13 17340939 17341090 -84532079 + MER3 DNA MER1_type 5 153 -56 2570 189 13 25 chr13 17341094 17341651 -84531518 - MER89 LTR ERV1 0 559 10 182 257 156 18 chr13 17343024 17343133 -84530036 + L2 LINE L2 3186 3309 -4 23 0 0 0 chr13 17343136 17343159 -84530010 + AT_rich Low_complexity Low_complexity 1 23 0 214 376 9 46 chr13 17343218 17343327 -84529842 - L2 LINE L2 0 3272 3168 1107 160 0 0 chr13 17343481 17343650 -84529519 + AluSg/x SINE Alu 134 302 -10 288 0 0 0 chr13 17346100 17346132 -84527037 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 426 20 0 0 chr13 17346131 17346182 -84526987 + (TG)n Simple_repeat Simple_repeat 2 52 0 546 223 8 0 chr13 17347852 17347973 -84525196 - MER94 DNA DNA -12 122 1 225 296 0 51 chr13 17348353 17348451 -84524718 - L2 LINE L2 -1 3312 3220 290 136 198 12 chr13 17348553 17348634 -84524535 - MLT1J LTR MaLR -2 509 414 1022 179 0 6 chr13 17348639 17348812 -84524357 + FAM SINE Alu 1 172 -3 798 251 54 133 chr13 17348861 17349343 -84523826 - MLT1J LTR MaLR -67 444 1 234 326 52 36 chr13 17349864 17350057 -84523112 - L2 LINE L2 -411 2903 2708 1963 157 13 0 chr13 17350060 17350365 -84522804 + AluSx SINE Alu 4 312 0 244 213 16 33 chr13 17350773 17350834 -84522335 + GA-rich Low_complexity Low_complexity 1 60 0 2076 141 13 7 chr13 17350850 17351156 -84522013 - AluSx SINE Alu -4 308 1 50 0 0 0 chr13 17351178 17351228 -84521941 + AT_rich Low_complexity Low_complexity 1 50 0 862 295 150 62 chr13 17351310 17352397 -84520772 - L2 LINE L2 0 3313 2126 389 275 55 44 chr13 17352465 17352647 -84520522 + MER69 DNA AcHobo 216 399 -827 2549 197 52 89 chr13 17353607 17354491 -84518678 + MER69 DNA AcHobo 1451 2286 -240 2088 117 7 13 chr13 17354491 17354789 -84518380 - AluY SINE Alu -15 296 1 2549 197 52 89 chr13 17354789 17355022 -84518147 + MER69 DNA AcHobo 2286 2526 0 544 252 80 58 chr13 17355058 17355195 -84517974 - L2 LINE L2 -1262 2052 1920 2125 139 46 0 chr13 17355195 17355541 -84517628 + THE1B LTR MaLR 1 362 -2 10619 98 16 58 chr13 17355544 17357191 -84515978 + THE1B-int LTR MaLR 2 1580 0 2219 152 22 0 chr13 17357191 17357547 -84515622 + THE1B LTR MaLR 1 364 0 544 252 80 58 chr13 17357547 17357630 -84515539 - L2 LINE L2 -1394 1920 1822 573 261 90 36 chr13 17357677 17358076 -84515093 + LTR33 LTR ERVL 45 521 0 183 80 0 0 chr13 17358848 17358873 -84514296 + (A)n Simple_repeat Simple_repeat 1 25 0 470 305 67 14 chr13 17359058 17359281 -84513888 + L2 LINE L2 2827 3061 -211 223 240 120 13 chr13 17359416 17359491 -84513678 + L2 LINE L2 3190 3272 0 192 341 24 24 chr13 17359929 17360011 -84513158 + MIR3 SINE MIR 2 83 -125 580 265 0 0 chr13 17360022 17360158 -84513011 + MIR SINE MIR 65 200 -62 282 352 113 7 chr13 17360190 17360332 -84512837 - MIR3 SINE MIR -34 174 18 2350 63 6 54 chr13 17361599 17361916 -84511253 - AluY SINE Alu -9 302 1 447 290 168 0 chr13 17362276 17362431 -84510738 + MER5A DNA MER1_type 9 189 0 413 253 137 60 chr13 17362557 17362739 -84510430 - MIR SINE MIR -66 196 1 1434 293 74 25 chr13 17363716 17364348 -84508821 - MLT2F LTR ERVL 0 663 1 251 255 92 0 chr13 17364531 17364629 -84508540 - MER103 DNA DNA -59 107 1 1656 197 79 6 chr13 17364759 17365099 -84508070 - MLT1A1 LTR MaLR 0 365 1 1264 240 41 43 chr13 17366563 17367001 -84506168 + LTR16A1 LTR ERVL 7 443 -14 770 258 12 8 chr13 17367092 17367344 -84505825 + L1M4 LINE L1 4795 5047 -1099 458 141 141 0 chr13 17367549 17367648 -84505521 + L1ME LINE L1 4839 4951 -1195 299 250 0 0 chr13 17367648 17367716 -84505453 + Tigger5 DNA MER2_type 2255 2322 -1 1162 268 65 6 chr13 17367769 17368561 -84504608 + L1ME LINE L1 4961 5795 -369 255 234 31 55 chr13 17368562 17368655 -84504514 + L1MC5 LINE L1 7789 7880 -81 1767 201 100 0 chr13 17368655 17369034 -84504135 + MER47B DNA MER2_type 1 417 -1 255 234 31 55 chr13 17369034 17369068 -84504101 + L1MC5 LINE L1 7880 7913 -48 266 288 0 0 chr13 17369331 17369411 -84503758 - MIR SINE MIR 0 262 183 267 311 100 28 chr13 17369435 17369615 -84503554 - L2 LINE L2 -5 3308 3116 400 263 10 20 chr13 17369968 17370067 -84503102 + MER5B DNA MER1_type 17 114 -64 191 269 45 30 chr13 17372566 17372633 -84500536 + L2 LINE L2 3205 3272 0 1810 171 44 3 chr13 17373175 17373473 -84499696 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr13 17373874 17373896 -84499273 + AT_rich Low_complexity Low_complexity 1 22 0 2817 70 0 13 chr13 17373978 17374366 -84498803 + MLT2A1 LTR ERVL 1 383 -61 26 50 0 0 chr13 17374366 17374406 -84498763 + AT_rich Low_complexity Low_complexity 1 40 0 230 57 0 0 chr13 17374408 17374443 -84498726 - MLT2A1 LTR ERVL -44 400 366 366 125 11 4 chr13 17374473 17374556 -84498613 + MLT2A2 LTR ERVL 360 453 0 185 289 24 48 chr13 17375120 17375203 -84497966 - L2 LINE L2 -42 3230 3150 1660 214 73 52 chr13 17375311 17375829 -84497340 + MLT1F LTR MaLR 5 533 -9 236 276 23 11 chr13 17375849 17375936 -84497233 + MLT1F-int LTR MaLR 4 91 -1280 374 276 33 14 chr13 17376534 17376744 -84496425 + MLT1F-int LTR MaLR 307 520 -851 1341 112 128 0 chr13 17376778 17377028 -84496141 - L1MA9 LINE L1 -5 6307 6026 379 252 38 112 chr13 17377703 17378017 -84495152 + MLT1F-int LTR MaLR 1444 1734 -1 1007 246 34 15 chr13 17378018 17378286 -84494883 + MLT1F1 LTR MaLR 1 273 -269 2275 230 90 23 chr13 17378289 17378937 -84494232 + MER63C DNA MER1_type 2 704 -356 3086 168 15 74 chr13 17378937 17379671 -84493498 + LTR8 LTR ERV1 1 691 0 2275 230 90 23 chr13 17379671 17379747 -84493422 + MER63C DNA MER1_type 704 774 -156 2688 130 5 2 chr13 17379748 17380171 -84492998 + MER57B LTR ERV1 2 425 -9 604 195 8 8 chr13 17380240 17380368 -84492801 + MER63C DNA MER1_type 805 932 0 * 1176 180 33 12 chr13 17380368 17380612 -84492557 + MLT1F1 LTR MaLR 311 559 -8 341 232 22 103 chr13 17380797 17380923 -84492246 - MIR SINE MIR -64 144 20 256 133 109 32 chr13 17381233 17381248 -84491921 - L1MC3 LINE L1 -9 7776 7764 2160 64 25 0 chr13 17381248 17381530 -84491639 - L1PA5 LINE L1 -5 6149 5861 256 133 109 32 chr13 17381530 17381828 -84491341 - L1MC3 LINE L1 -21 7764 5989 263 149 0 0 chr13 17382729 17382776 -84490393 - Charlie1 DNA MER1_type -8 2753 2707 2229 198 9 2 chr13 17382871 17383305 -84489864 + MER44D DNA MER2_type 1 492 -113 415 284 9 0 chr13 17383301 17383410 -84489759 - Charlie1 DNA MER1_type -2650 111 2 * 420 293 96 27 chr13 17383720 17383908 -84489261 - MIR SINE MIR -11 251 51 790 244 76 25 chr13 17383928 17384166 -84489003 - MIR SINE MIR -1 261 12 2315 71 40 0 chr13 17384816 17385112 -84488057 + AluY SINE Alu 1 308 -3 222 189 57 0 chr13 17385665 17385718 -84487451 + CT-rich Low_complexity Low_complexity 4 59 0 360 43 0 0 chr13 17386076 17386122 -84487047 + (TG)n Simple_repeat Simple_repeat 1 46 0 1103 252 104 9 chr13 17387140 17387485 -84485684 - MLT1F1 LTR MaLR 0 567 190 261 0 0 0 chr13 17387549 17387578 -84485591 + (T)n Simple_repeat Simple_repeat 1 29 0 695 238 18 6 chr13 17387595 17387763 -84485406 - MLT1F1 LTR MaLR -372 170 1 1100 115 28 197 chr13 17388790 17389180 -84483989 - L1MB3 LINE L1 -13 6170 5847 1719 170 0 31 chr13 17389566 17389860 -84483309 + AluJb SINE Alu 1 285 -27 307 256 150 8 chr13 17390854 17390987 -84482182 - MLT1I LTR MaLR -190 219 68 279 266 46 9 chr13 17391186 17391295 -84481874 + MER46C DNA MER2_type 15 127 -211 779 302 53 4 chr13 17391450 17391695 -84481474 - MIR SINE MIR -5 257 1 2090 121 3 7 chr13 17392130 17392435 -84480734 - AluSx SINE Alu -8 304 1 657 167 35 0 chr13 17392438 17392582 -84480587 - L1MA9 LINE L1 -3 6309 6161 5406 26 0 0 chr13 17392825 17393475 -84479694 + L1PA3 LINE L1 5516 6165 0 22 0 0 0 chr13 17393658 17393680 -84479489 + AT_rich Low_complexity Low_complexity 1 22 0 2212 61 3 27 chr13 17394468 17394762 -84478407 - AluY SINE Alu -2 309 23 194 252 272 0 chr13 17395102 17395205 -84477964 + L2 LINE L2 3122 3252 -20 605 200 0 15 chr13 17395225 17395360 -84477809 + L1PB4 LINE L1 6020 6152 -4 1564 160 80 33 chr13 17395457 17395732 -84477437 - AluJo SINE Alu -24 288 1 532 239 201 10 chr13 17396048 17396257 -84476912 - MIR SINE MIR -1 261 13 255 368 11 0 chr13 17396893 17396980 -84476189 - L2 LINE L2 -4 3309 3222 1292 175 5 116 chr13 17397066 17397471 -84475698 - MLT1A1 LTR MaLR -8 418 1 278 288 0 0 chr13 17397479 17397545 -84475624 + L2 LINE L2 3245 3310 -3 202 291 29 107 chr13 17398736 17398839 -84474330 - L2 LINE L2 -71 3201 3107 1887 137 3 11 chr13 17400312 17400617 -84472552 + AluSx SINE Alu 1 303 0 2845 178 40 30 chr13 17401586 17402214 -84470955 - LTR27 LTR ERV1 0 636 3 423 0 0 0 chr13 17402710 17402757 -84470412 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 220 0 60 chr13 17403874 17403924 -84469245 + MIR SINE MIR 23 69 -193 183 281 16 16 chr13 17403939 17404003 -84469166 + MIR SINE MIR 199 262 0 496 208 131 93 chr13 17404354 17404884 -84468285 + MER34 LTR ERV1 47 542 0 1333 127 39 10 chr13 17404933 17405369 -84467800 + LTR54 LTR ERV1 1 510 0 409 262 104 37 chr13 17405385 17405549 -84467620 - MIR SINE MIR -58 204 30 200 291 134 47 chr13 17405571 17405698 -84467471 - L2 LINE L2 -11 3302 3165 317 235 185 34 chr13 17405699 17405818 -84467351 - MER5A DNA MER1_type -46 143 7 206 346 90 60 chr13 17405849 17406083 -84467086 - L2 LINE L2 -221 3051 2811 333 229 102 72 chr13 17406961 17407127 -84466042 - MER20B DNA MER1_type -612 171 1 309 283 13 19 chr13 17407530 17407689 -84465480 + HAL1 LINE L1 1367 1524 -983 306 268 184 48 chr13 17407725 17407812 -84465357 + HAL1 LINE L1 1529 1603 -904 2200 104 7 7 chr13 17407812 17408109 -84465060 - AluSg SINE Alu -13 297 1 306 268 184 48 chr13 17408109 17408189 -84464980 + HAL1 LINE L1 1603 1719 -788 21 0 0 0 chr13 17408549 17408570 -84464599 + AT_rich Low_complexity Low_complexity 1 21 0 1417 150 15 15 chr13 17408959 17409225 -84463944 - L1MC2 LINE L1 -12 6332 6067 424 277 0 0 chr13 17409650 17409762 -84463407 - L2 LINE L2 -606 2708 2597 1715 190 27 0 chr13 17409804 17410136 -84463033 - MER58B DNA MER1_type 0 341 1 282 0 77 0 chr13 17410137 17410176 -84462993 + T-rich Low_complexity Low_complexity 3 180 0 1540 99 27 157 chr13 17410176 17410509 -84462660 - AluSc SINE Alu -1 328 1 437 292 129 15 chr13 17411490 17411815 -84461354 + L1MC/D LINE L1 3589 3950 -2196 2269 49 10 26 chr13 17412027 17412331 -84460838 + AluY SINE Alu 1 299 -12 251 287 74 9 chr13 17412353 17412461 -84460708 - MLT1I LTR MaLR -22 387 273 413 290 45 11 chr13 17412466 17412642 -84460527 + L1MC/D LINE L1 5615 5796 -2012 21 0 0 0 chr13 17412648 17412669 -84460500 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 17412830 17412868 -84460301 + AT_rich Low_complexity Low_complexity 1 38 0 309 298 36 36 chr13 17412967 17413135 -84460034 - L1 LINE L1 -3677 2469 2302 1679 146 3 3 chr13 17414170 17414457 -84458712 + L1MA6 LINE L1 5844 6130 -170 1843 172 46 0 chr13 17414464 17414790 -84458379 - MER7A DNA MER2_type -7 339 1 857 205 100 0 chr13 17414810 17415000 -84458169 - MER3 DNA MER1_type 0 209 1 3937 222 89 42 chr13 17416118 17417442 -84455727 + HsTC2 DNA Tc2 61 1629 -269 2261 55 4 4 chr13 17417442 17417740 -84455429 + AluY SINE Alu 9 306 0 3937 222 89 42 chr13 17417740 17418026 -84455143 + HsTC2 DNA Tc2 1629 1900 2 1788 186 0 3 chr13 17420263 17420564 -84452605 + AluJb SINE Alu 1 300 -12 2286 112 0 0 chr13 17420567 17420870 -84452299 + AluSg SINE Alu 1 303 -7 2038 194 69 6 chr13 17421293 17421784 -84451385 - L1PA16 LINE L1 -1743 4403 3882 5416 134 18 16 chr13 17421802 17423528 -84449641 + L1PA16 LINE L1 4434 6157 -9 7893 135 16 10 chr13 17424669 17425067 -84448102 - HSMAR2 DNA Mariner -2 1300 906 207 0 0 0 chr13 17425067 17425090 -84448079 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7893 135 16 10 chr13 17425090 17425982 -84447187 - HSMAR2 DNA Mariner -396 906 2 477 313 25 40 chr13 17428563 17428761 -84444408 - MIR SINE MIR -12 250 56 453 19 0 0 chr13 17428988 17429042 -84444127 + (CA)n Simple_repeat Simple_repeat 2 55 0 6968 243 50 32 chr13 17429840 17430704 -84442465 + L1MEc LINE L1 2166 3012 -3203 1692 191 0 3 chr13 17430704 17430992 -84442177 + AluJb SINE Alu 1 287 -25 6968 243 50 32 chr13 17430992 17432872 -84440297 + L1MEc LINE L1 3012 4935 -1280 2160 158 5 16 chr13 17432872 17433251 -84439918 - THE1C LTR MaLR 0 375 1 6968 243 50 32 chr13 17433251 17433386 -84439783 + L1MEc LINE L1 4935 5066 -1149 1077 165 0 0 chr13 17433386 17433544 -84439625 + AluSq SINE Alu 1 158 -155 275 198 26 103 chr13 17433552 17433668 -84439501 + L1MA10 LINE L1 6228 6334 0 810 266 254 7 chr13 17434074 17434458 -84438711 + L2 LINE L2 2519 2989 -283 894 224 21 5 chr13 17434574 17434766 -84438403 + MLT1H LTR MaLR 40 234 -315 1470 196 58 0 chr13 17434884 17435002 -84438167 + AluJo SINE Alu 3 113 -199 243 0 0 0 chr13 17435002 17435029 -84438140 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1470 196 58 0 chr13 17435029 17435170 -84437999 + AluJo SINE Alu 113 277 -35 226 226 0 32 chr13 17435181 17435243 -84437926 + MLT1G1 LTR MaLR 520 579 -16 440 245 9 9 chr13 17435263 17435369 -84437800 + L2 LINE L2 3171 3276 -37 198 0 0 0 chr13 17435437 17435459 -84437710 + (TA)n Simple_repeat Simple_repeat 1 22 0 1039 251 47 0 chr13 17435694 17435929 -84437240 - MLT1F1 LTR MaLR 0 567 322 2084 92 9 82 chr13 17436059 17436387 -84436782 - AluSx SINE Alu -5 307 4 380 226 77 107 chr13 17436390 17436558 -84436611 - MLT1E LTR MaLR -375 167 5 189 107 0 0 chr13 17437361 17437389 -84435780 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 213 196 0 0 chr13 17437765 17437811 -84435358 + (CA)n Simple_repeat Simple_repeat 1 46 0 1384 276 56 82 chr13 17439226 17439937 -84433232 + MER21B LTR ERV1 22 714 -149 387 194 61 103 chr13 17440298 17440463 -84432706 + L2 LINE L2 2357 2514 -800 992 188 2 205 chr13 17440504 17440767 -84432402 + Charlie1a DNA MER1_type 1 153 -2608 1131 201 43 112 chr13 17440767 17441159 -84432010 - MLT1A1 LTR MaLR 0 365 1 992 188 2 205 chr13 17441159 17441304 -84431865 + Charlie1a DNA MER1_type 153 326 -1129 621 172 70 102 chr13 17441365 17441580 -84431589 + MER3 DNA MER1_type 1 208 -1 353 276 141 18 chr13 17442917 17443080 -84430089 - MIR SINE MIR -50 212 30 2115 138 33 30 chr13 17444832 17445195 -84427974 - THE1B LTR MaLR 0 364 1 200 83 0 28 chr13 17445577 17445613 -84427556 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 2232 147 0 8 chr13 17445617 17445984 -84427185 - L1PB1 LINE L1 -3 6864 6501 551 83 83 5 chr13 17445989 17446198 -84426971 + (TA)n Simple_repeat Simple_repeat 1 225 0 555 65 98 0 chr13 17446396 17446549 -84426620 + (TA)n Simple_repeat Simple_repeat 1 168 0 13546 197 60 9 chr13 17446549 17452591 -84420578 - L1PB1 LINE L1 -360 6507 6 188 356 139 0 chr13 17453041 17453142 -84420027 + L2 LINE L2 3149 3263 -9 243 245 0 0 chr13 17453765 17453818 -84419351 + MIR SINE MIR 74 126 -82 213 132 0 0 chr13 17455214 17455252 -84417917 + (GGGA)n Simple_repeat Simple_repeat 3 40 0 1882 135 4 4 chr13 17457238 17457553 -84415616 + AluSx SINE Alu 2 316 0 4813 85 27 3 chr13 17457773 17458445 -84414724 + LTR12 LTR ERV1 1 688 0 2532 292 96 46 chr13 17458580 17459629 -84413540 + L2 LINE L2 1294 2289 -1024 180 77 0 0 chr13 17459629 17459655 -84413514 + (TG)n Simple_repeat Simple_repeat 2 27 0 2532 292 96 46 chr13 17459655 17460511 -84412658 + L2 LINE L2 2289 3305 -8 2516 212 63 26 chr13 17460968 17461726 -84411443 + L1M4 LINE L1 2323 3108 -3038 2625 211 88 20 chr13 17461731 17462346 -84410823 - L1MB8 LINE L1 -207 5971 5399 2197 135 0 0 chr13 17462346 17462643 -84410526 + AluSx SINE Alu 1 297 -15 2625 211 88 20 chr13 17462643 17463100 -84410069 - L1MB8 LINE L1 -779 5399 4813 295 250 0 19 chr13 17463165 17463273 -84409896 + L1M4 LINE L1 2912 3017 -3129 4697 138 20 1 chr13 17463553 17464301 -84408868 - L1MC1 LINE L1 0 6333 5572 21 0 0 0 chr13 17464369 17464390 -84408779 + AT_rich Low_complexity Low_complexity 1 21 0 451 280 34 11 chr13 17464477 17464652 -84408517 + HAL1b LINE L1 521 699 -649 192 314 157 13 chr13 17464956 17465109 -84408060 + L2 LINE L2 3097 3271 -1 437 305 28 67 chr13 17466540 17466689 -84406480 + MIR3 SINE MIR 20 163 -45 489 261 30 0 chr13 17466937 17467071 -84406098 + MER117 DNA MER1_type 32 169 -28 776 255 29 45 chr13 17467392 17467554 -84405615 + MLT1J LTR MaLR 45 208 -303 2080 163 47 126 chr13 17467554 17467621 -84405548 + LTR48B LTR ERV1 1 72 -572 2031 138 3 7 chr13 17467621 17467919 -84405250 + AluSx SINE Alu 1 297 -15 270 0 0 0 chr13 17467919 17467949 -84405220 + (TA)n Simple_repeat Simple_repeat 2 31 0 2080 163 47 126 chr13 17467949 17468579 -84404590 + LTR48B LTR ERV1 70 644 0 776 255 29 45 chr13 17468579 17468659 -84404510 + MLT1J LTR MaLR 208 283 -228 1009 208 38 5 chr13 17468996 17469208 -84403961 + MER58A DNA MER1_type 6 224 0 1019 226 50 31 chr13 17470093 17470411 -84402758 + MER33 DNA MER1_type 1 324 0 3651 120 12 2 chr13 17470423 17470941 -84402228 + MER1A DNA MER1_type 5 527 0 724 144 14 7 chr13 17471552 17471691 -84401478 - L1MA6 LINE L1 -5 6295 6156 1832 152 3 7 chr13 17472097 17472380 -84400789 + AluJo SINE Alu 6 287 -25 1734 144 180 18 chr13 17473876 17474264 -84398905 + LTR47A LTR ERVL 2 452 0 1979 122 14 0 chr13 17474393 17474695 -84398474 - AluSg SINE Alu 0 306 1 347 309 41 0 chr13 17474697 17474794 -84398375 - L2 LINE L2 -8 3305 3205 806 215 13 0 chr13 17474946 17475104 -84398065 + FAM SINE Alu 5 164 -11 303 204 61 21 chr13 17475151 17475259 -84397910 + L1MD2 LINE L1 6243 7994 -1 1975 152 24 32 chr13 17475350 17475726 -84397443 - THE1C LTR MaLR 0 375 3 22 0 0 0 chr13 17475815 17475837 -84397332 + AT_rich Low_complexity Low_complexity 1 22 0 263 313 104 10 chr13 17477166 17477262 -84395907 + L2 LINE L2 3168 3272 0 292 286 27 20 chr13 17477752 17477899 -84395270 + L1MC4a LINE L1 5758 5905 -1903 27 0 0 0 chr13 17478039 17478066 -84395103 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 17478426 17478447 -84394722 + AT_rich Low_complexity Low_complexity 1 21 0 249 231 0 19 chr13 17478490 17478542 -84394627 + MIR SINE MIR 114 164 -98 222 37 0 0 chr13 17479767 17479794 -84393375 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1302 190 76 100 chr13 17481159 17481415 -84391754 - MER34B LTR ERV1 0 585 324 858 134 8 15 chr13 17481415 17481549 -84391620 + FLAM_C SINE Alu 1 133 0 1302 190 76 100 chr13 17481549 17481860 -84391309 - MER34B LTR ERV1 -261 324 13 1970 144 3 0 chr13 17482158 17482457 -84390712 - AluSx SINE Alu -12 300 1 216 0 0 0 chr13 17482900 17482924 -84390245 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 463 165 0 20 chr13 17482993 17483101 -84390068 + L1MA7 LINE L1 5914 6020 -280 299 185 0 65 chr13 17483110 17483202 -84389967 + L1MA7 LINE L1 6206 6291 0 331 276 41 41 chr13 17483780 17484007 -84389162 - MER41B LTR ERV1 -220 415 55 500 255 243 31 chr13 17484081 17484340 -84388829 + L2 LINE L2 2999 3312 -1 1329 211 22 89 chr13 17484423 17484452 -84388717 + LTR37B LTR ERV1 10 39 -429 2584 196 30 13 chr13 17484452 17484992 -84388177 + MER44D DNA MER2_type 1 604 -1 1329 211 22 89 chr13 17484992 17485454 -84387715 + LTR37B LTR ERV1 39 468 0 222 128 0 0 chr13 17486437 17486476 -84386693 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 11996 132 36 7 chr13 17486485 17486528 -84386641 + Tigger1 DNA MER2_type 307 347 -2071 273 29 0 0 chr13 17486528 17486562 -84386607 + (TC)n Simple_repeat Simple_repeat 1 34 0 11996 132 36 7 chr13 17486562 17487171 -84385998 + Tigger1 DNA MER2_type 347 937 -1481 2020 144 0 22 chr13 17487171 17487484 -84385685 - AluSx SINE Alu -6 306 1 11996 132 36 7 chr13 17487484 17488883 -84384286 + Tigger1 DNA MER2_type 937 2418 0 775 138 36 0 chr13 17489079 17489217 -84383952 - Tigger1 DNA MER2_type -223 2195 2053 2277 113 3 0 chr13 17489253 17489553 -84383616 + AluSp SINE Alu 1 301 -12 21 57 0 0 chr13 17489774 17489809 -84383360 + AT_rich Low_complexity Low_complexity 1 35 0 2140 200 41 12 chr13 17490395 17490886 -84382283 - MLT1D LTR MaLR 0 505 1 25 0 0 0 chr13 17491058 17491083 -84382086 + AT_rich Low_complexity Low_complexity 1 25 0 1595 122 4 32 chr13 17491203 17491342 -84381827 + AluSq SINE Alu 1 132 -181 2198 125 0 0 chr13 17491342 17491645 -84381524 + AluSc SINE Alu 1 303 -6 1595 122 4 32 chr13 17491645 17491751 -84381418 + AluSq SINE Alu 132 239 -74 1982 147 26 3 chr13 17491849 17492155 -84381014 + AluSq SINE Alu 1 313 0 694 203 0 0 chr13 17492539 17492657 -84380512 + FLAM_C SINE Alu 1 118 -15 1009 218 53 31 chr13 17493237 17493296 -84379873 - LTR37A LTR ERV1 -22 404 348 1936 164 3 0 chr13 17493296 17493589 -84379580 + AluSq SINE Alu 1 294 -19 1009 218 53 31 chr13 17493589 17493887 -84379282 - LTR37A LTR ERV1 -78 348 39 2012 141 9 3 chr13 17494235 17494575 -84378594 - LTR35 LTR ERV1 0 618 277 1257 160 0 0 chr13 17494575 17494762 -84378407 + AluSg/x SINE Alu 100 286 -26 1739 103 0 73 chr13 17494769 17494833 -84378336 - LTR35 LTR ERV1 -339 279 212 2021 136 7 7 chr13 17494833 17495128 -84378041 + AluSx SINE Alu 1 295 -17 1739 103 0 73 chr13 17495128 17495364 -84377805 - LTR35 LTR ERV1 -406 212 1 2559 202 85 69 chr13 17496437 17497250 -84375919 + LTR1B LTR ERV1 1 826 0 271 348 76 50 chr13 17497814 17498274 -84374895 - L2 LINE L2 -411 2903 2432 1721 182 89 9 chr13 17498796 17499225 -84373944 + MER31A LTR ERV1 1 463 -22 2214 136 31 0 chr13 17499275 17499627 -84373542 + THE1B LTR MaLR 1 363 -1 8690 122 35 59 chr13 17499628 17501192 -84371977 + THE1B-int LTR MaLR 1 1527 -53 2132 142 40 6 chr13 17501211 17501563 -84371606 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr13 17502617 17502645 -84370524 + AT_rich Low_complexity Low_complexity 1 28 0 317 155 0 36 chr13 17502854 17502938 -84370231 - LTR37A LTR ERV1 0 426 346 1769 173 0 7 chr13 17502946 17503235 -84369934 + AluJb SINE Alu 3 289 -23 428 212 9 44 chr13 17503264 17503377 -84369792 + MER31B LTR ERV1 1 109 -357 373 147 13 13 chr13 17503518 17503593 -84369576 + MLT1B LTR MaLR 316 390 0 254 262 43 77 chr13 17503593 17503893 -84369276 + MLT1F LTR MaLR 133 539 -3 309 26 0 0 chr13 17504341 17504379 -84368790 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 1324 146 84 62 chr13 17504379 17504653 -84368516 - AluJo SINE Alu -32 280 1 1824 179 101 30 chr13 17504748 17504878 -84368291 + MER77 LTR ERV1 182 301 -304 2101 138 0 20 chr13 17504878 17505182 -84367987 + AluY SINE Alu 1 298 -13 1824 179 101 30 chr13 17505182 17505447 -84367722 + MER77 LTR ERV1 301 605 0 371 322 47 13 chr13 17505756 17505905 -84367264 + MIR SINE MIR 50 203 -59 22 35 0 0 chr13 17506657 17506686 -84366483 + AT_rich Low_complexity Low_complexity 1 29 0 1695 166 43 0 chr13 17506691 17506969 -84366200 + AluJo SINE Alu 1 290 -22 22 0 0 0 chr13 17506970 17506992 -84366177 + AT_rich Low_complexity Low_complexity 1 22 0 1803 97 4 4 chr13 17507243 17507481 -84365688 - AluSq SINE Alu -75 238 1 225 0 0 0 chr13 17508071 17508096 -84365073 + (T)n Simple_repeat Simple_repeat 1 25 0 227 234 146 135 chr13 17508213 17508258 -84364911 - MIR3 SINE MIR -12 196 153 2085 119 24 0 chr13 17508258 17508576 -84364593 + AluSq SINE Alu 1 313 0 227 234 146 135 chr13 17508576 17508722 -84364447 - MIR3 SINE MIR -55 153 3 184 129 0 32 chr13 17508885 17508916 -84364253 - MER5A DNA MER1_type -116 73 44 207 0 0 0 chr13 17509612 17509635 -84363534 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2016 125 3 26 chr13 17509664 17509969 -84363200 + AluSx SINE Alu 1 298 -14 1482 144 136 0 chr13 17510132 17510389 -84362780 + AluSx SINE Alu 5 296 -16 32 67 0 0 chr13 17510389 17510449 -84362720 + AT_rich Low_complexity Low_complexity 1 60 0 2392 50 0 0 chr13 17511363 17511691 -84361478 - AluY SINE Alu 0 328 1 300 256 25 13 chr13 17513677 17513784 -84359385 - L2 LINE L2 -281 2991 2883 297 0 0 0 chr13 17513852 17513885 -84359284 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2918 26 0 0 chr13 17513890 17514231 -84358938 - L1PA3 LINE L1 0 6155 5815 617 324 45 24 chr13 17514762 17515017 -84358152 - MER102b DNA MER1_type -1088 340 75 243 0 0 0 chr13 17515017 17515044 -84358125 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 617 324 45 24 chr13 17515044 17515121 -84358048 - MER102b DNA MER1_type -1353 75 1 399 275 37 0 chr13 17515204 17515313 -84357856 + MER117 DNA MER1_type 1 113 -84 1373 189 126 31 chr13 17516427 17516808 -84356361 + LTR37A LTR ERV1 8 424 -2 218 279 12 47 chr13 17517703 17517789 -84355380 - L2 LINE L2 -74 3198 3116 679 139 70 16 chr13 17518718 17518847 -84354322 + LTR53 LTR ERVL 1 136 -383 1602 175 25 74 chr13 17518950 17519315 -84353854 - MLT1B LTR MaLR -43 347 1 635 292 15 15 chr13 17519439 17519641 -84353528 + MER58A DNA MER1_type 3 204 -20 298 242 0 0 chr13 17519640 17519702 -84353467 + MER58A DNA MER1_type 163 224 0 * 314 327 29 27 chr13 17519768 17519921 -84353248 + MIR3 SINE MIR 15 164 -55 680 237 189 40 chr13 17520446 17520695 -84352474 + MLT1H LTR MaLR 71 356 -193 330 273 149 0 chr13 17521137 17521258 -84351911 + MER117 DNA MER1_type 2 140 -57 21 0 0 0 chr13 17521407 17521428 -84351741 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 17521540 17521562 -84351607 + AT_rich Low_complexity Low_complexity 1 22 0 2324 103 0 0 chr13 17521566 17521857 -84351312 - AluSx SINE Alu -21 291 1 27 49 0 0 chr13 17521912 17521953 -84351216 + AT_rich Low_complexity Low_complexity 1 41 0 1038 191 4 71 chr13 17522008 17522233 -84350936 + MER58A DNA MER1_type 4 213 -11 333 301 183 20 chr13 17522363 17522516 -84350653 + MER5B DNA MER1_type 1 178 0 1841 143 38 0 chr13 17523736 17524023 -84349146 - AluSx SINE Alu -14 298 1 25 0 0 0 chr13 17524031 17524056 -84349113 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr13 17524377 17524412 -84348757 - L2 LINE L2 -6 3307 3273 532 233 184 82 chr13 17524962 17525293 -84347876 - MLT1A1 LTR MaLR 0 365 1 2058 189 26 8 chr13 17525304 17525684 -84347485 - MLT1A1-int LTR MaLR -11 1724 1338 1273 148 15 0 chr13 17525749 17525952 -84347217 - AluSg/x SINE Alu -4 308 103 760 182 32 0 chr13 17525957 17526111 -84347058 - MLT2B1 LTR ERVL -361 159 1 343 281 113 38 chr13 17528356 17528541 -84344628 + MER20 DNA MER1_type 1 199 -20 279 320 133 35 chr13 17529674 17529930 -84343239 - L2 LINE L2 -782 2532 2252 410 271 271 52 chr13 17530292 17530661 -84342508 + L2 LINE L2 2863 3312 -1 2147 110 0 19 chr13 17531454 17531762 -84341407 + AluSx SINE Alu 1 302 -10 755 109 0 9 chr13 17532129 17532239 -84340930 - MER46A DNA MER2_type -3 233 125 240 337 281 6 chr13 17532949 17533127 -84340042 + L2 LINE L2 189 415 -2899 6061 94 0 17 chr13 17533237 17534134 -84339035 + HERVH LTR ERV1 2114 2995 -4718 991 120 7 0 chr13 17534113 17534263 -84338906 + HERVH LTR ERV1 3140 3290 -4423 * 1053 142 0 6 chr13 17534253 17534415 -84338754 + HERVH LTR ERV1 3492 3652 -4061 * 4606 60 10 2 chr13 17534407 17535010 -84338159 + HERVH LTR ERV1 7106 7713 0 1461 165 65 79 chr13 17535010 17535428 -84337741 + LTR7 LTR ERV1 1 412 -38 249 175 0 35 chr13 17535546 17535603 -84337566 - LTR37A LTR ERV1 -288 138 84 1340 194 46 9 chr13 17535626 17535928 -84337241 - MER61A LTR ERV1 -37 306 1 323 196 0 0 chr13 17535950 17536006 -84337163 - LTR37A LTR ERV1 -363 63 8 28 0 0 0 chr13 17536300 17536328 -84336841 + AT_rich Low_complexity Low_complexity 1 28 0 270 139 0 0 chr13 17536615 17536658 -84336511 + MSTC LTR MaLR 4 46 -382 22 56 0 0 chr13 17537694 17537730 -84335439 + AT_rich Low_complexity Low_complexity 1 36 0 225 0 0 0 chr13 17539185 17539210 -84333959 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1519 141 147 78 chr13 17540319 17540351 -84332818 - MSTB LTR MaLR -44 382 354 2357 91 0 3 chr13 17540351 17540658 -84332511 + AluSg SINE Alu 5 310 0 1519 141 147 78 chr13 17540658 17540958 -84332211 - MSTB LTR MaLR -72 354 27 216 250 0 0 chr13 17541193 17541245 -84331924 + (TTCA)n Simple_repeat Simple_repeat 2 53 0 726 287 188 14 chr13 17541564 17541857 -84331312 - L3 LINE CR1 -813 764 421 1073 265 90 24 chr13 17541868 17542245 -84330924 - MLT1L LTR MaLR -18 597 196 3280 64 0 12 chr13 17542271 17542694 -84330475 - L1PA8A LINE L1 -28 6103 5686 287 197 121 0 chr13 17542695 17542761 -84330408 - MLT1L LTR MaLR -405 210 137 811 133 111 0 chr13 17542977 17543112 -84330057 + AluSg/x SINE Alu 125 274 -36 310 0 67 0 chr13 17543117 17543162 -84330007 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 375 357 5 55 chr13 17544214 17544413 -84328756 - MIR SINE MIR -73 189 1 186 241 56 37 chr13 17544572 17544626 -84328543 - L2 LINE L2 -8 3305 3251 433 290 89 24 chr13 17545959 17546128 -84327041 + MIR SINE MIR 12 191 -71 354 226 168 66 chr13 17546686 17546823 -84326346 - MIR SINE MIR 0 262 112 375 267 154 21 chr13 17546826 17547066 -84326103 - L1ME LINE L1 -303 5818 5547 601 172 0 0 chr13 17547122 17547215 -84325954 - AluJb SINE Alu -17 295 203 * 651 162 0 0 chr13 17547214 17547313 -84325856 - AluJ/FLAM SINE Alu -213 99 1 74 69 0 0 chr13 17547494 17547638 -84325531 + AT_rich Low_complexity Low_complexity 1 144 0 512 247 209 21 chr13 17547651 17547890 -84325279 - MLT1K LTR MaLR -26 562 279 494 267 17 0 chr13 17548052 17548172 -84324997 - L2 LINE L2 -1357 1957 1836 872 292 118 32 chr13 17548210 17549065 -84324104 + L1ME3 LINE L1 4180 5108 -1038 442 256 11 11 chr13 17549076 17549256 -84323913 + GA-rich Low_complexity Low_complexity 1 180 0 324 200 29 19 chr13 17549269 17549374 -84323795 + GA-rich Low_complexity Low_complexity 2 107 0 1357 266 57 15 chr13 17549375 17550090 -84323079 + L1ME3 LINE L1 5122 5862 -300 1624 274 56 2 chr13 17550220 17550651 -84322518 - LTR16B LTR ERVL 0 464 11 1737 182 66 3 chr13 17550956 17551291 -84321878 + MSTA LTR MaLR 1 356 -72 2096 290 135 23 chr13 17551291 17552273 -84320896 - L2 LINE L2 -1687 1627 536 234 145 0 48 chr13 17552354 17552416 -84320753 - L1MC5 LINE L1 -44 7917 7859 284 327 150 19 chr13 17553045 17553460 -84319709 + L2 LINE L2 2586 3057 -215 204 313 0 0 chr13 17553599 17553647 -84319522 + MIR SINE MIR 209 256 -6 530 164 50 29 chr13 17556301 17556441 -84316728 + LTR49-int LTR ERV1 1152 1294 -3642 499 127 155 56 chr13 17556489 17556631 -84316538 + LTR49-int LTR ERV1 1291 1446 -3490 539 263 17 30 chr13 17556775 17557011 -84316158 + LTR49-int LTR ERV1 1683 1915 -3021 2564 202 13 25 chr13 17557423 17557947 -84315222 - MLT2B1 LTR ERVL 0 520 3 260 309 53 0 chr13 17558951 17559045 -84314124 + LTR49-int LTR ERV1 4466 4564 -1767 2984 221 40 77 chr13 17559091 17560082 -84313087 + LTR49-int LTR ERV1 3270 4224 -712 1456 187 8 0 chr13 17560097 17560364 -84312805 + MER49 LTR ERV1 15 283 -640 1401 257 6 12 chr13 17560424 17560747 -84312422 + MER4D LTR ERV1 551 871 -32 595 144 162 77 chr13 17560799 17561021 -84312148 + LTR37A LTR ERV1 5 245 -181 325 277 0 0 chr13 17561070 17561171 -84311998 + LTR49-int LTR ERV1 4370 4470 -466 322 233 9 95 chr13 17561801 17561917 -84311252 + MER92B LTR ERV1 1 106 -530 437 116 14 0 chr13 17562091 17562160 -84311009 + MER92C LTR ERV1 485 554 0 1849 258 117 72 chr13 17562232 17563571 -84309598 - HAL1 LINE L1 -396 2111 713 756 139 90 0 chr13 17563994 17564116 -84309053 - FLAM_A SINE Alu 0 133 1 1807 208 125 22 chr13 17564286 17564868 -84308301 + LTR48B LTR ERV1 1 642 -2 258 32 0 0 chr13 17566974 17567005 -84306164 + (TA)n Simple_repeat Simple_repeat 2 32 0 1735 173 19 3 chr13 17567006 17567313 -84305856 - AluJo SINE Alu 0 312 1 1910 204 13 15 chr13 17567501 17567898 -84305271 - MSTD LTR MaLR 0 396 1 27 29 0 0 chr13 17567993 17568027 -84305142 + AT_rich Low_complexity Low_complexity 1 34 0 2487 110 0 24 chr13 17568781 17569154 -84304015 - THE1B LTR MaLR 0 364 1 1995 174 50 27 chr13 17569247 17569787 -84303382 - MLT2A2 LTR ERVL -2 552 1 245 162 59 44 chr13 17569991 17570059 -84303110 - MLT1K LTR MaLR -340 248 180 276 313 38 0 chr13 17571062 17571193 -84301976 + (TA)n Simple_repeat Simple_repeat 1 136 0 499 206 44 44 chr13 17571310 17571470 -84301699 + MER112 DNA MER1_type 90 249 -11 319 298 0 0 chr13 17572275 17572359 -84300810 + L2 LINE L2 3186 3269 -3 258 323 84 54 chr13 17572463 17572832 -84300337 + L2 LINE L2 2398 2777 -537 221 276 35 0 chr13 17573088 17573146 -84300023 - L2 LINE L2 -17 3296 3237 728 212 26 82 chr13 17573283 17573514 -84299655 + MER20 DNA MER1_type 2 219 0 3078 119 38 4 chr13 17573672 17574194 -84298975 - L1MB3 LINE L1 -10 6173 5634 387 301 78 19 chr13 17574194 17574400 -84298769 - L2 LINE L2 -7 3306 3089 255 297 0 0 chr13 17574524 17574588 -84298581 - MIR SINE MIR -149 113 50 1955 104 75 0 chr13 17574669 17574949 -84298220 - AluSp SINE Alu -12 301 1 240 283 0 0 chr13 17575809 17575862 -84297307 - L2 LINE L2 -10 3262 3210 453 291 10 0 chr13 17576187 17576290 -84296879 - L2 LINE L2 -33 3239 3136 327 301 90 32 chr13 17577273 17577429 -84295740 - MLT1K LTR MaLR -394 194 30 498 276 184 44 chr13 17578290 17578605 -84294564 - L2 LINE L2 -1634 1680 1322 2078 93 4 0 chr13 17578913 17579192 -84293977 - AluY SINE Alu -4 307 28 241 293 24 37 chr13 17579292 17579374 -84293795 + L2 LINE L2 3233 3313 0 21 36 0 0 chr13 17579549 17579577 -84293592 + AT_rich Low_complexity Low_complexity 1 28 0 2159 87 38 0 chr13 17580202 17580491 -84292678 - AluSc SINE Alu -9 300 1 25 65 0 0 chr13 17581017 17581063 -84292106 + AT_rich Low_complexity Low_complexity 1 46 0 2450 70 0 0 chr13 17581119 17581420 -84291749 + AluY SINE Alu 1 301 -10 234 222 63 0 chr13 17583862 17583925 -84289244 + Tigger1 DNA MER2_type 1 67 -2351 8555 126 20 4 chr13 17583926 17585226 -84287943 + Tigger1 DNA MER2_type 39 1359 -1059 1510 182 24 68 chr13 17585338 17585707 -84287462 + L1PA15 LINE L1 5810 6162 -3 21 0 0 0 chr13 17586057 17586078 -84287091 + AT_rich Low_complexity Low_complexity 1 21 0 381 326 191 0 chr13 17586638 17586830 -84286339 - MIR SINE MIR -2 260 34 5418 252 76 47 chr13 17587451 17588170 -84284999 + L1M4 LINE L1 1617 2314 -3901 569 277 94 0 chr13 17588170 17588372 -84284797 - MER58A DNA MER1_type -3 221 1 5418 252 76 47 chr13 17588372 17588707 -84284462 + L1M4 LINE L1 2314 2638 -3577 1860 148 7 7 chr13 17588707 17588997 -84284172 + AluSx SINE Alu 2 291 -21 5418 252 76 47 chr13 17588997 17589973 -84283196 + L1M4 LINE L1 2638 3584 -2631 1937 106 0 4 chr13 17589973 17590237 -84282932 + AluSx SINE Alu 48 310 -2 5418 252 76 47 chr13 17590237 17591748 -84281421 + L1M4 LINE L1 3584 5228 -987 851 202 52 0 chr13 17591752 17592008 -84281161 + L1M4 LINE L1 5252 5518 -725 539 333 86 44 chr13 17592179 17592694 -84280475 + L2 LINE L2 2645 3191 -122 297 0 0 0 chr13 17592694 17592727 -84280442 + (TG)n Simple_repeat Simple_repeat 2 34 0 539 333 86 44 chr13 17592727 17592822 -84280347 + L2 LINE L2 3191 3281 -32 185 254 0 15 chr13 17593029 17593096 -84280073 + (TA)n Simple_repeat Simple_repeat 2 67 0 22 56 0 0 chr13 17593589 17593625 -84279544 + AT_rich Low_complexity Low_complexity 1 36 0 195 69 0 0 chr13 17594160 17594189 -84278980 + (T)n Simple_repeat Simple_repeat 1 29 0 239 301 35 71 chr13 17594748 17594861 -84278308 + MIR3 SINE MIR 77 185 -23 2193 109 7 0 chr13 17595548 17595842 -84277327 + AluSx SINE Alu 1 296 -16 263 252 159 20 chr13 17595864 17596015 -84277154 + L1ME4a LINE L1 5950 6121 0 193 373 27 0 chr13 17596073 17596148 -84277021 + L2 LINE L2 3148 3224 -48 187 351 0 18 chr13 17596661 17596718 -84276451 + MIR SINE MIR 24 79 -183 211 247 74 12 chr13 17596747 17596828 -84276341 + MIR SINE MIR 148 233 -29 1963 189 37 11 chr13 17596838 17597218 -84275951 + MSTD LTR MaLR 1 390 -6 23 0 0 0 chr13 17597401 17597424 -84275745 + AT_rich Low_complexity Low_complexity 1 23 0 584 298 235 22 chr13 17597982 17598395 -84274774 + L2 LINE L2 1248 1748 -1566 1308 191 57 35 chr13 17598395 17598536 -84274633 - AluJo SINE Alu -23 289 152 351 0 0 0 chr13 17598536 17598575 -84274594 + (TA)n Simple_repeat Simple_repeat 1 39 0 1308 191 57 35 chr13 17598575 17598716 -84274453 - AluJo SINE Alu -160 152 1 1921 132 14 14 chr13 17598722 17599009 -84274160 - AluJb SINE Alu -12 300 14 2087 279 114 27 chr13 17599017 17600169 -84273000 + L2 LINE L2 2078 3313 0 544 219 224 10 chr13 17600520 17600712 -84272457 + L1MB7 LINE L1 5868 6100 -84 1833 199 6 0 chr13 17600724 17601061 -84272108 - MER2 DNA MER2_type -6 339 1 254 224 24 12 chr13 17601061 17601146 -84272023 + L1MB2 LINE L1 6086 6171 0 652 328 77 35 chr13 17601354 17601524 -84271645 + L1MDb LINE L1 949 1110 -5296 1527 201 3 3 chr13 17601524 17601827 -84271342 + AluJb SINE Alu 1 303 -9 652 328 77 35 chr13 17601827 17602328 -84270841 + L1MDb LINE L1 1110 1649 -4757 1232 107 11 28 chr13 17602377 17602554 -84270615 + AluSg/x SINE Alu 114 287 -25 429 379 71 41 chr13 17602568 17603283 -84269886 + L1MDb LINE L1 1766 2502 -4085 325 361 40 83 chr13 17603523 17603764 -84269405 + L2 LINE L2 2962 3189 -83 1620 234 81 32 chr13 17603764 17604256 -84268913 - LTR40a LTR ERVL -1 518 3 325 361 40 83 chr13 17604256 17604316 -84268853 + L2 LINE L2 3189 3250 -22 21 0 0 0 chr13 17604328 17604349 -84268820 + AT_rich Low_complexity Low_complexity 1 21 0 4136 81 21 2 chr13 17604987 17605565 -84267604 + L1PA10 LINE L1 5575 6163 -5 912 175 78 53 chr13 17605963 17606169 -84267000 - AluJb SINE Alu -15 297 87 2584 96 6 3 chr13 17606383 17606737 -84266432 + HSMAR1 DNA Mariner 931 1285 -2 4460 119 53 24 chr13 17607390 17608177 -84264992 - L1MA5 LINE L1 0 6300 5491 576 244 0 16 chr13 17608247 17608389 -84264780 + FLAM_A SINE Alu 3 133 0 180 0 0 0 chr13 17608732 17608752 -84264417 + (TG)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr13 17608752 17608791 -84264378 + AT_rich Low_complexity Low_complexity 1 39 0 252 186 29 43 chr13 17608815 17608885 -84264284 + MIR SINE MIR 194 262 0 339 319 67 14 chr13 17609090 17609300 -84263869 - HAL1 LINE L1 -746 1761 1541 694 224 29 17 chr13 17609447 17609621 -84263548 + MIR SINE MIR 3 178 -84 780 132 0 8 chr13 17610009 17610138 -84263031 + L1MA3 LINE L1 6173 6300 -5 7352 93 12 18 chr13 17610264 17611327 -84261842 + MER11C LTR ERVK 1 1057 -14 21 0 0 0 chr13 17612259 17612280 -84260889 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr13 17612561 17612586 -84260583 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr13 17613072 17613109 -84260060 + AT_rich Low_complexity Low_complexity 1 37 0 229 267 56 78 chr13 17613228 17613318 -84259851 + MIR SINE MIR 31 118 -90 593 129 65 0 chr13 17613500 17613593 -84259576 + LTR54 LTR ERV1 1 99 -411 439 275 170 10 chr13 17613596 17613833 -84259336 + MER57A LTR ERV1 108 351 -52 1560 125 129 22 chr13 17613903 17614175 -84258994 - AluSg1 SINE Alu -8 301 1 2264 125 0 0 chr13 17615119 17615430 -84257739 - AluSx SINE Alu -1 311 1 298 342 54 92 chr13 17615859 17616338 -84256831 - L2 LINE L2 0 3272 2812 2294 83 0 35 chr13 17616363 17616675 -84256494 + AluY SINE Alu 1 301 -10 1544 133 0 4 chr13 17616858 17617083 -84256086 + AluSg/x SINE Alu 69 292 -20 207 0 0 0 chr13 17617083 17617106 -84256063 + (TA)n Simple_repeat Simple_repeat 1 23 0 453 116 0 0 chr13 17617106 17617175 -84255994 + (CA)n Simple_repeat Simple_repeat 2 70 0 21 0 0 0 chr13 17617193 17617214 -84255955 + AT_rich Low_complexity Low_complexity 1 21 0 416 302 112 55 chr13 17617245 17617706 -84255463 + L1MEc LINE L1 1416 1849 -4547 2169 133 128 8 chr13 17617706 17618088 -84255081 + MSTA LTR MaLR 1 428 0 8325 188 38 7 chr13 17618088 17619690 -84253479 + MSTA-int LTR MaLR 1 1651 0 1856 175 140 8 chr13 17619690 17620068 -84253101 + MSTA LTR MaLR 1 428 0 416 302 112 55 chr13 17620068 17620316 -84252853 + L1MEc LINE L1 1848 2168 -4228 243 0 0 0 chr13 17620904 17620931 -84252238 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr13 17621015 17621059 -84252110 + AT_rich Low_complexity Low_complexity 1 44 0 3193 220 55 40 chr13 17621067 17621295 -84251874 + L1ME1 LINE L1 5211 5434 -732 1659 116 39 105 chr13 17621295 17621658 -84251511 + MER44D DNA MER2_type 1 609 0 3193 220 55 40 chr13 17621658 17622109 -84251060 + L1ME1 LINE L1 5434 5876 -290 2009 98 15 0 chr13 17622109 17622383 -84250786 + AluSg SINE Alu 1 278 -32 324 0 0 0 chr13 17622389 17622425 -84250744 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3193 220 55 40 chr13 17622425 17622680 -84250489 + L1ME1 LINE L1 5880 6161 -5 21 0 0 0 chr13 17622687 17622708 -84250461 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 17623280 17623303 -84249866 + (TC)n Simple_repeat Simple_repeat 2 24 0 379 0 39 0 chr13 17623487 17623538 -84249631 + (CA)n Simple_repeat Simple_repeat 2 54 0 914 262 13 4 chr13 17623707 17623940 -84249229 - MIR SINE MIR -23 239 5 31 26 0 0 chr13 17624411 17624449 -84248720 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 17624734 17624769 -84248400 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 17624845 17624882 -84248287 + AT_rich Low_complexity Low_complexity 1 37 0 193 313 157 18 chr13 17627429 17627595 -84245574 + L3 LINE CR1 205 393 -1184 278 369 21 7 chr13 17627863 17628004 -84245165 + L3 LINE CR1 981 1123 -454 203 203 89 89 chr13 17628356 17628435 -84244734 + L3 LINE CR1 1425 1503 -74 404 256 58 16 chr13 17628506 17628627 -84244542 - MIR SINE MIR -103 159 34 20000 168 39 19 chr13 17628674 17634194 -84238975 + L1MA9 LINE L1 13 5638 -1927 2553 156 57 2 chr13 17635172 17635628 -84237541 + MER31A LTR ERV1 5 485 0 1993 162 8 14 chr13 17636414 17636520 -84236649 + L1MA9 LINE L1 7105 7210 -521 342 115 0 0 chr13 17636520 17636572 -84236597 + (TA)n Simple_repeat Simple_repeat 2 53 0 1993 162 8 14 chr13 17636572 17636823 -84236346 + L1MA9 LINE L1 7210 7460 -271 405 218 75 30 chr13 17637119 17637252 -84235917 + L1MA9 LINE L1 7593 7731 0 203 246 49 49 chr13 17637526 17637587 -84235582 - MIR SINE MIR -133 129 69 23 33 0 0 chr13 17638654 17638684 -84234485 + AT_rich Low_complexity Low_complexity 1 30 0 2559 105 14 3 chr13 17638685 17639056 -84234113 - THE1C LTR MaLR 0 375 1 230 164 178 0 chr13 17639056 17639129 -84234040 - HAL1b LINE L1 -248 1100 1015 408 268 9 27 chr13 17639983 17640095 -84233074 - L2 LINE L2 -4 3309 3200 22 0 0 0 chr13 17640255 17640277 -84232892 + GC_rich Low_complexity Low_complexity 1 22 0 215 143 41 0 chr13 17640561 17640610 -84232559 + CT-rich Low_complexity Low_complexity 3 53 0 1167 76 16 10 chr13 17640599 17640928 -84232241 + (TTTC)n Simple_repeat Simple_repeat 2 506 0 305 138 0 17 chr13 17640914 17640972 -84232197 + (TCCC)n Simple_repeat Simple_repeat 3 59 0 2072 120 0 0 chr13 17640981 17641255 -84231914 - AluSx SINE Alu -33 279 6 1723 130 14 51 chr13 17641397 17641689 -84231480 - AluJb SINE Alu -30 282 2 1544 202 0 17 chr13 17641737 17642029 -84231140 + AluJo SINE Alu 3 289 -23 352 227 242 0 chr13 17642265 17642397 -84230772 - MIR SINE MIR -27 235 72 25 0 0 0 chr13 17643964 17643989 -84229180 + AT_rich Low_complexity Low_complexity 1 25 0 653 257 36 85 chr13 17645375 17645706 -84227463 - MLT1K LTR MaLR -119 469 155 288 375 39 0 chr13 17646042 17646170 -84226999 + L2 LINE L2 3181 3313 0 301 329 169 41 chr13 17646892 17647236 -84225933 - L2 LINE L2 0 3313 2926 996 167 154 14 chr13 17647292 17647513 -84225656 - AluJo SINE Alu -11 301 50 25 51 0 0 chr13 17647553 17647592 -84225577 + AT_rich Low_complexity Low_complexity 1 39 0 451 296 122 27 chr13 17647592 17648116 -84225053 - L1MC4a LINE L1 -441 5801 5321 2207 115 0 0 chr13 17648307 17648602 -84224567 - AluSq SINE Alu -10 303 9 240 210 49 12 chr13 17648678 17648759 -84224410 - L1 LINE L1 -1106 5040 4957 22 0 0 0 chr13 17649238 17649260 -84223909 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 17649677 17649699 -84223470 + AT_rich Low_complexity Low_complexity 1 22 0 215 331 191 0 chr13 17650816 17650973 -84222196 + MIR SINE MIR 53 239 -23 458 315 94 28 chr13 17651373 17651586 -84221583 + MIR SINE MIR 2 228 -34 265 275 0 92 chr13 17651809 17651940 -84221229 - L3 LINE CR1 -495 1082 964 29 35 0 35 chr13 17652470 17652495 -84220674 + AT_rich Low_complexity Low_complexity 1 25 -31 1925 158 3 0 chr13 17652495 17652792 -84220377 + AluSq SINE Alu 1 298 -15 29 35 0 35 chr13 17652792 17652824 -84220345 + AT_rich Low_complexity Low_complexity 25 56 0 239 250 161 8 chr13 17652832 17652956 -84220213 - L3 LINE CR1 -801 776 634 669 241 35 96 chr13 17653005 17653266 -84219903 - MER112 DNA MER1_type -10 250 6 301 327 33 33 chr13 17653278 17653431 -84219738 - L3 LINE CR1 -1009 568 416 223 322 58 0 chr13 17654179 17654266 -84218903 + L2 LINE L2 2596 2687 -627 1237 216 139 29 chr13 17654696 17655124 -84218045 + MLT1C LTR MaLR 6 467 0 2153 82 3 48 chr13 17655418 17655734 -84217435 + AluY SINE Alu 1 302 -9 382 282 92 41 chr13 17656142 17656337 -84216832 - MIR SINE MIR -56 206 2 6713 142 24 6 chr13 17656808 17657879 -84215290 - Tigger7 DNA MER2_type -1396 1091 1 324 245 64 11 chr13 17657879 17657973 -84215196 + MIR SINE MIR 156 254 -8 513 280 33 50 chr13 17659689 17659871 -84213298 - L2 LINE L2 -1 3312 3134 206 404 37 0 chr13 17660287 17660396 -84212773 + MIR SINE MIR 84 196 -66 248 330 96 92 chr13 17662508 17662790 -84210379 + L2 LINE L2 2600 2882 -432 761 267 83 21 chr13 17662801 17663035 -84210134 - MIR SINE MIR 0 262 21 228 297 36 62 chr13 17663011 17663203 -84209966 + L2 LINE L2 2866 3052 -220 * 1794 148 11 3 chr13 17663203 17663615 -84209554 + AluSx SINE Alu 27 440 0 463 188 8 23 chr13 17663487 17663806 -84209363 + GA-rich Low_complexity Low_complexity 4 320 0 370 330 81 4 chr13 17663880 17664044 -84209125 + MIR SINE MIR 10 184 -76 607 301 18 46 chr13 17664382 17664770 -84208399 - L1M4 LINE L1 -2056 4090 3714 196 69 0 0 chr13 17665213 17665242 -84207927 + (TTTG)n Simple_repeat Simple_repeat 1 80 0 1466 155 3 94 chr13 17665242 17665551 -84207618 - AluJb SINE Alu -1 309 1 385 322 63 44 chr13 17666069 17666326 -84206843 - L1MEd LINE L1 -1144 1346 997 1193 183 55 126 chr13 17666369 17666789 -84206380 + MLT1B LTR MaLR 1 390 0 201 94 0 0 chr13 17666872 17666904 -84206265 + (TAG)n Simple_repeat Simple_repeat 1 32 0 339 263 113 44 chr13 17667335 17667495 -84205674 + MIR SINE MIR 21 191 -71 198 128 0 106 chr13 17667760 17667807 -84205362 - MIR SINE MIR -112 150 109 1000 146 12 0 chr13 17667970 17668135 -84205034 + MSTC LTR MaLR 1 167 -261 1192 170 85 39 chr13 17668270 17668529 -84204640 - MSTB LTR MaLR -155 271 1 1390 262 78 10 chr13 17668705 17669214 -84203955 - L2 LINE L2 -239 3074 2520 1759 96 50 27 chr13 17670007 17670268 -84202901 - AluSx SINE Alu -45 267 1 23 0 0 0 chr13 17670811 17670834 -84202335 + AT_rich Low_complexity Low_complexity 1 23 0 1093 131 6 0 chr13 17670859 17671019 -84202150 + AluSq SINE Alu 140 300 -13 229 265 0 0 chr13 17671022 17671071 -84202098 + Tigger2 DNA MER2_type 1 49 -2669 5819 155 8 4 chr13 17671180 17672412 -84200757 + L1M1 LINE L1 4303 5538 -743 5998 112 12 8 chr13 17672418 17673387 -84199782 + L1PA14 LINE L1 5182 6152 -9 277 308 10 10 chr13 17673387 17673491 -84199678 + MIR SINE MIR 158 261 -1 400 226 140 43 chr13 17674454 17674618 -84198551 - MIR SINE MIR -77 185 6 226 399 59 20 chr13 17675593 17675746 -84197423 + L2 LINE L2 2933 3091 -181 31 26 0 0 chr13 17676006 17676044 -84197125 + AT_rich Low_complexity Low_complexity 1 38 0 1408 199 24 3 chr13 17676047 17676343 -84196826 + L1MB4 LINE L1 5787 6088 -92 * 2568 246 56 13 chr13 17676341 17678182 -84194987 + L1MD2 LINE L1 4101 6082 -277 562 150 39 0 chr13 17678230 17678357 -84194812 + Charlie5 DNA MER1_type 2454 2585 -27 1953 134 70 22 chr13 17678693 17679051 -84194118 - THE1C LTR MaLR 0 375 1 2952 168 28 20 chr13 17679419 17680316 -84192853 + L1P4 LINE L1 4697 5609 -557 1742 176 0 28 chr13 17680316 17680644 -84192525 - AluSx SINE Alu 0 320 1 2952 168 28 20 chr13 17680644 17680793 -84192376 + L1P4 LINE L1 5609 5755 -411 494 248 77 63 chr13 17680903 17681287 -84191882 + L1ME2 LINE L1 2143 2492 -3723 300 28 0 0 chr13 17681285 17681321 -84191848 + L1PA6 LINE L1 10 45 -6416 * 33064 76 48 8 chr13 17681321 17686941 -84186228 + L1PA6 LINE L1 632 6475 0 917 241 67 52 chr13 17686944 17687361 -84185808 + L1ME2 LINE L1 2480 2906 -3309 2001 126 0 17 chr13 17687361 17687654 -84185515 + AluSx SINE Alu 6 293 -19 917 241 67 52 chr13 17687654 17687717 -84185452 + L1ME2 LINE L1 2906 2967 -3248 1035 217 234 36 chr13 17687721 17688463 -84184706 + L1ME2 LINE L1 3028 3916 -2299 * 2210 230 107 0 chr13 17688462 17689050 -84184119 + L1MB7 LINE L1 5534 6184 0 471 282 66 42 chr13 17689066 17689325 -84183844 + L1ME2 LINE L1 3929 4193 -2022 544 216 75 0 chr13 17689328 17689462 -84183707 - MLT1A1 LTR MaLR -221 144 1 299 24 0 24 chr13 17689471 17689512 -84183657 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 387 226 99 94 chr13 17689512 17689918 -84183251 + L1ME2 LINE L1 4465 4875 -1340 2205 248 79 44 chr13 17690019 17690296 -84182873 + L1ME2 LINE L1 5124 5390 -843 2048 131 34 0 chr13 17690296 17690587 -84182582 - AluSx SINE Alu -10 302 2 2205 248 79 44 chr13 17690587 17691339 -84181830 + L1ME2 LINE L1 5390 6211 -22 1449 189 56 25 chr13 17691728 17692014 -84181155 + AluJo SINE Alu 1 295 -17 2158 122 0 0 chr13 17692226 17692521 -84180648 + AluSx SINE Alu 1 295 -17 2145 135 3 0 chr13 17692595 17692906 -84180263 + AluSp SINE Alu 1 312 -1 243 103 0 0 chr13 17693165 17693204 -84179965 + (A)n Simple_repeat Simple_repeat 1 39 0 6218 137 32 3 chr13 17693255 17694677 -84178492 - L1PB1 LINE L1 -1 6150 4688 332 266 129 0 chr13 17694716 17694840 -84178329 + MIR SINE MIR 51 190 -72 6790 220 28 21 chr13 17695518 17697023 -84176146 + L1PA12 LINE L1 7 2616 -4968 252 163 0 0 chr13 17697024 17697067 -84176102 + AluSg/x SINE Alu 127 169 -133 12728 189 20 18 chr13 17697067 17700493 -84172676 + L1PA12 LINE L1 4144 7605 -1 24 67 0 0 chr13 17700539 17700584 -84172585 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr13 17701098 17701127 -84172042 + AT_rich Low_complexity Low_complexity 1 29 0 420 274 44 9 chr13 17701214 17701327 -84171842 + MER58A DNA MER1_type 1 117 0 1460 264 102 46 chr13 17701342 17702000 -84171169 + MER21B LTR ERV1 17 711 -152 530 211 73 0 chr13 17702118 17702227 -84170942 + MER58A DNA MER1_type 108 224 0 311 307 124 7 chr13 17702562 17702699 -84170470 - MIR3 SINE MIR -9 199 47 218 324 36 18 chr13 17703253 17703364 -84169805 - MIR SINE MIR -133 129 17 288 305 13 16 chr13 17705794 17705964 -84167205 + MIR SINE MIR 37 251 -11 183 100 0 0 chr13 17705964 17705994 -84167175 + (TTA)n Simple_repeat Simple_repeat 1 30 0 1530 167 72 72 chr13 17706351 17706741 -84166428 + MLT1B LTR MaLR 1 390 0 271 321 91 48 chr13 17706771 17706958 -84166211 + MIR3 SINE MIR 14 208 0 967 243 72 6 chr13 17707142 17707488 -84165681 - Charlie7 DNA MER1_type -1381 1231 863 283 208 13 26 chr13 17707493 17707570 -84165599 - MLT1J LTR MaLR 0 511 436 917 191 115 32 chr13 17707754 17708032 -84165137 - MER33 DNA MER1_type -23 301 1 409 335 92 52 chr13 17708044 17708316 -84164853 + L2 LINE L2 2990 3272 0 6807 136 52 4 chr13 17709021 17710187 -84162982 - Tigger3b DNA MER2_type 0 1231 10 880 169 94 42 chr13 17711651 17711959 -84161210 - MER33 DNA MER1_type 0 324 1 414 220 0 0 chr13 17712770 17712870 -84160299 + (TATATG)n Simple_repeat Simple_repeat 4 103 0 477 118 13 0 chr13 17712928 17713004 -84160165 + AluS SINE Alu 1 77 -236 830 135 5 111 chr13 17713005 17713156 -84160013 + L1MB3 LINE L1 5996 6121 -62 1157 143 39 0 chr13 17713156 17713359 -84159810 + L1MA6 LINE L1 6090 6300 0 830 135 5 111 chr13 17713359 17713414 -84159755 + L1MB3 LINE L1 6121 6180 -3 25 65 0 0 chr13 17713528 17713574 -84159595 + AT_rich Low_complexity Low_complexity 1 46 0 843 214 33 45 chr13 17713890 17714133 -84159036 + MLT2B1 LTR ERVL 1 240 -174 327 329 33 90 chr13 17714258 17714559 -84158610 + L2 LINE L2 2915 3198 -74 296 320 148 8 chr13 17714737 17714859 -84158310 + MIR3 SINE MIR 19 157 -51 2004 157 21 3 chr13 17714942 17715280 -84157889 - MER2 DNA MER2_type 0 344 1 1962 147 41 29 chr13 17715586 17715792 -84157377 + MER2 DNA MER2_type 1 214 -131 2115 126 52 15 chr13 17715792 17716117 -84157052 - MER1B DNA MER1_type 0 337 1 1962 147 41 29 chr13 17716117 17716251 -84156918 + MER2 DNA MER2_type 214 345 0 226 278 0 0 chr13 17716740 17716794 -84156375 + MIR SINE MIR 179 232 -30 221 365 31 10 chr13 17716838 17716934 -84156235 + MIR SINE MIR 14 111 -151 320 265 0 12 chr13 17717154 17717237 -84155932 - MER34 LTR ERV1 -460 82 1 1804 145 16 13 chr13 17717258 17717561 -84155608 + AluSx SINE Alu 1 304 -8 258 32 0 0 chr13 17717636 17717667 -84155502 + (CA)n Simple_repeat Simple_repeat 2 32 0 457 253 41 20 chr13 17717722 17717868 -84155301 - MER117 DNA MER1_type -3 194 46 397 310 108 29 chr13 17717891 17718381 -84154788 - L1ME4a LINE L1 -215 5906 5378 204 40 0 0 chr13 17718574 17718599 -84154570 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2054 146 0 0 chr13 17719215 17719517 -84153652 - AluSq SINE Alu -11 302 1 299 257 76 29 chr13 17719742 17719847 -84153322 - MIR SINE MIR -71 191 82 567 266 128 44 chr13 17719859 17720085 -84153084 - MIR SINE MIR -11 251 7 272 278 20 99 chr13 17720349 17720500 -84152669 - MLT1G LTR MaLR -80 510 372 688 205 0 0 chr13 17720500 17720617 -84152552 + MER5A DNA MER1_type 61 177 -12 1264 236 76 22 chr13 17720617 17720985 -84152184 - MLT1G LTR MaLR -193 397 10 21 36 0 0 chr13 17721215 17721243 -84151926 + AT_rich Low_complexity Low_complexity 1 28 0 303 247 59 12 chr13 17723644 17723729 -84149440 - MIR SINE MIR -10 252 164 * 434 256 196 25 chr13 17723720 17723919 -84149250 + MIR SINE MIR 30 262 0 379 278 70 67 chr13 17723955 17724239 -84148930 + MARNA DNA Mariner 32 316 -270 227 323 65 0 chr13 17725030 17725092 -84148077 - L2 LINE L2 -3 3310 3245 294 384 100 26 chr13 17727235 17727654 -84145515 + L2 LINE L2 2347 2796 -518 246 230 40 80 chr13 17727969 17728069 -84145100 + L2 LINE L2 3177 3272 0 445 287 52 11 chr13 17728183 17728359 -84144810 - MIR SINE MIR -31 231 45 195 296 37 0 chr13 17728380 17728434 -84144735 + L2 LINE L2 3213 3268 -4 2299 107 0 0 chr13 17729022 17729332 -84143837 - AluSx SINE Alu -2 310 1 278 315 149 31 chr13 17729870 17730092 -84143077 + L2 LINE L2 3019 3266 -47 23 0 0 0 chr13 17730374 17730397 -84142772 + AT_rich Low_complexity Low_complexity 1 23 0 893 270 171 27 chr13 17730830 17731400 -84141769 - L2 LINE L2 -126 3187 2536 563 215 23 105 chr13 17731716 17731935 -84141234 + MER58C DNA MER1_type 3 203 -12 21 0 0 0 chr13 17732952 17732973 -84140196 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 17732994 17733022 -84140147 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr13 17734150 17734172 -84138997 + (GA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr13 17735080 17735101 -84138068 + AT_rich Low_complexity Low_complexity 1 21 0 494 299 35 15 chr13 17736121 17736318 -84136851 + L1ME LINE L1 138 338 -5867 930 261 94 36 chr13 17736409 17737149 -84136020 + L1ME LINE L1 830 1588 -4627 1922 276 81 53 chr13 17737573 17738738 -84134431 - L2 LINE L2 0 3313 2023 2011 170 18 30 chr13 17738967 17739362 -84133807 + MLT1B LTR MaLR 1 390 0 519 304 60 57 chr13 17739469 17740067 -84133102 - HAL1b LINE L1 -689 659 60 24 32 0 0 chr13 17740073 17740104 -84133065 + AT_rich Low_complexity Low_complexity 1 31 0 2373 241 81 29 chr13 17740166 17740356 -84132813 - L1MEc LINE L1 -3255 2960 2781 1710 177 3 7 chr13 17740356 17740650 -84132519 - AluJo SINE Alu -19 293 1 2373 241 81 29 chr13 17740650 17741678 -84131491 - L1MEc LINE L1 -3434 2781 1734 759 242 0 25 chr13 17741820 17742018 -84131151 - L1MB7 LINE L1 -8 6176 5984 1559 177 7 18 chr13 17742136 17742413 -84130756 - AluJo SINE Alu -24 288 15 898 231 136 8 chr13 17743118 17743369 -84129800 + MER102a DNA MER1_type 43 325 -5 228 386 20 0 chr13 17743369 17743470 -84129699 - MIR3 SINE MIR -48 160 58 181 321 60 24 chr13 17743551 17743635 -84129534 + MIR SINE MIR 103 189 -73 1939 134 0 11 chr13 17746932 17747252 -84125917 - AluSx SINE Alu 0 317 1 1615 183 3 7 chr13 17748048 17748337 -84124832 + AluJb SINE Alu 1 288 -24 213 382 10 10 chr13 17748442 17748544 -84124625 + MIR SINE MIR 11 112 -150 184 212 0 0 chr13 17749033 17749066 -84124103 - MIR SINE MIR -12 250 218 923 286 29 26 chr13 17749071 17749420 -84123749 - L1MA9 LINE L1 -25 6287 5938 461 286 9 0 chr13 17749454 17749566 -84123603 - MIR SINE MIR -140 122 10 303 330 70 35 chr13 17749479 17749709 -84123460 + MIR SINE MIR 15 252 -10 * 21 36 0 0 chr13 17750482 17750510 -84122659 + AT_rich Low_complexity Low_complexity 1 28 0 374 337 102 76 chr13 17751617 17752157 -84121012 + L2 LINE L2 2220 2773 -541 439 304 123 27 chr13 17752667 17752960 -84120209 - MLT1I LTR MaLR -9 400 80 2035 93 0 0 chr13 17753167 17753436 -84119733 + AluSc SINE Alu 36 304 -5 530 148 42 28 chr13 17756169 17756311 -84116858 - L1MA4A LINE L1 -3 6300 6157 7286 39 1 0 chr13 17756311 17757753 -84115416 - L1PA4 LINE L1 -4 6151 4709 23371 40 13 2 chr13 17757753 17760676 -84112493 + L1PA4 LINE L1 1741 4696 -1450 1307 186 4 0 chr13 17760676 17760929 -84112240 - L1MA4A LINE L1 -136 6167 5914 2897 156 21 2 chr13 17760931 17761612 -84111557 - L1MA4A LINE L1 -530 5773 5082 274 279 0 0 chr13 17761614 17761693 -84111476 + L1MA4A LINE L1 5021 5099 -1047 30 0 0 0 chr13 17761693 17761723 -84111446 + AT_rich Low_complexity Low_complexity 1 30 0 7776 15 0 0 chr13 17763065 17764483 -84108686 + L1PA2 LINE L1 4757 6174 0 306 279 22 59 chr13 17765125 17765261 -84107908 + L1ME1 LINE L1 6 136 -5934 3186 250 75 24 chr13 17765824 17767738 -84105431 + L1ME1 LINE L1 4061 6076 -24 21 36 0 0 chr13 17767741 17767769 -84105400 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 17769116 17769160 -84104009 + AT_rich Low_complexity Low_complexity 1 44 0 34 84 0 0 chr13 17769677 17769760 -84103409 + AT_rich Low_complexity Low_complexity 1 83 0 22 70 0 0 chr13 17772974 17773017 -84100152 + AT_rich Low_complexity Low_complexity 1 43 0 1089 247 51 8 chr13 17773065 17773320 -84099849 + Tigger7 DNA MER2_type 2 267 -2220 259 160 20 0 chr13 17773334 17773384 -84099785 + Tigger7 DNA MER2_type 2437 2487 0 1118 123 0 23 chr13 17773416 17773587 -84099582 - AluSg/x SINE Alu -12 300 134 2290 86 0 7 chr13 17773589 17773890 -84099279 - AluY SINE Alu -12 299 1 440 162 30 0 chr13 17774505 17774604 -84098565 + L1MB5 LINE L1 5743 5844 -330 273 252 35 48 chr13 17775075 17775218 -84097951 - L1ME LINE L1 -676 5488 5352 2937 202 40 38 chr13 17775228 17776041 -84097128 - L1MB7 LINE L1 -162 6022 5207 1064 277 101 48 chr13 17776047 17777031 -84096138 - L1M LINE L1 -735 5429 4310 259 86 0 0 chr13 17777031 17777066 -84096103 - U2 snRNA snRNA -153 35 1 1064 277 101 48 chr13 17777066 17777595 -84095574 - L1M LINE L1 -1854 4310 3810 906 321 176 29 chr13 17777595 17778872 -84094297 + L2 LINE L2 1820 3305 -8 707 305 60 4 chr13 17779337 17779681 -84093488 - LTR33 LTR ERVL -2 519 102 359 306 52 8 chr13 17779757 17779891 -84093278 - MLT1L LTR MaLR -112 503 364 204 330 85 0 chr13 17780308 17780402 -84092767 - L3 LINE CR1 -157 1420 1319 22 0 0 0 chr13 17780683 17780705 -84092464 + AT_rich Low_complexity Low_complexity 1 22 0 234 318 32 86 chr13 17781928 17782148 -84091021 + L2 LINE L2 3105 3312 -1 592 251 141 31 chr13 17782786 17783077 -84090092 - MER33 DNA MER1_type -1 323 1 228 287 32 32 chr13 17783168 17783262 -84089907 - L2 LINE L2 -1081 2233 2140 27 62 0 0 chr13 17784212 17784260 -84088909 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr13 17784424 17784446 -84088723 + AT_rich Low_complexity Low_complexity 1 22 0 1395 6 0 0 chr13 17784447 17784605 -84088564 - L1HS LINE L1 -1 6154 5997 440 83 0 0 chr13 17784600 17784660 -84088509 + L1P LINE L1 5349 5408 -747 * 37 69 0 0 chr13 17784896 17784968 -84088201 + AT_rich Low_complexity Low_complexity 1 72 0 30 0 0 0 chr13 17785023 17785053 -84088116 + AT_rich Low_complexity Low_complexity 1 30 0 292 273 50 8 chr13 17785826 17785947 -84087222 - L1ME4a LINE L1 -49 6072 5947 2065 78 0 4 chr13 17786299 17786568 -84086601 - AluY SINE Alu -4 307 40 218 274 292 0 chr13 17786835 17786948 -84086221 - MIR SINE MIR -111 151 6 3473 209 49 59 chr13 17786991 17787979 -84085190 - L1MD3 LINE L1 -6 8028 7065 462 36 0 0 chr13 17787979 17788035 -84085134 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 3473 209 49 59 chr13 17788035 17788077 -84085092 - L1MD3 LINE L1 -969 7065 7024 905 224 52 9 chr13 17788083 17788293 -84084876 - MER58A DNA MER1_type -5 219 1 1613 235 145 0 chr13 17788303 17788793 -84084376 - L1MC4 LINE L1 -1037 7005 6445 23 86 0 0 chr13 17789162 17789220 -84083949 + AT_rich Low_complexity Low_complexity 1 58 0 28 48 0 0 chr13 17789708 17789750 -84083419 + AT_rich Low_complexity Low_complexity 1 42 0 500 256 49 79 chr13 17790144 17790347 -84082822 - MIR SINE MIR 0 262 66 282 275 84 42 chr13 17790665 17790807 -84082362 + L1ME3A LINE L1 6018 6165 -5 31 68 0 0 chr13 17791162 17791221 -84081948 + AT_rich Low_complexity Low_complexity 1 59 0 34 65 0 0 chr13 17791655 17791717 -84081452 + AT_rich Low_complexity Low_complexity 1 62 0 31 26 0 0 chr13 17791888 17791926 -84081243 + AT_rich Low_complexity Low_complexity 1 38 0 38 51 0 0 chr13 17792561 17792620 -84080549 + AT_rich Low_complexity Low_complexity 1 59 0 238 355 90 37 chr13 17793189 17793510 -84079659 - L2 LINE L2 -466 2848 2511 2313 68 0 36 chr13 17793975 17794282 -84078887 - AluY SINE Alu -15 296 1 293 213 67 27 chr13 17794300 17794375 -84078794 + MER116 DNA Mariner 3 80 0 186 417 32 6 chr13 17794434 17794590 -84078579 + L3 LINE CR1 617 776 -801 1725 160 20 23 chr13 17795494 17795800 -84077369 - AluSx SINE Alu -7 305 1 4159 34 2 0 chr13 17796621 17797121 -84076048 + L1PA5 LINE L1 5650 6150 -4 696 189 0 23 chr13 17797406 17797538 -84075631 + AluSq/x SINE Alu 5 133 -180 22 70 0 0 chr13 17797828 17797871 -84075298 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr13 17798107 17798140 -84075029 + AT_rich Low_complexity Low_complexity 1 33 0 268 214 0 78 chr13 17798870 17798973 -84074196 - L1MC4 LINE L1 -1334 6708 6614 232 250 0 48 chr13 17798903 17798987 -84074182 + L1MC4 LINE L1 6624 6703 -1339 * 239 315 0 0 chr13 17798989 17799081 -84074088 - L1MC4 LINE L1 -1335 6707 6616 * 306 208 0 62 chr13 17799007 17799103 -84074066 + L1MC4 LINE L1 6614 6703 -1339 225 287 0 43 chr13 17799121 17799215 -84073954 + L1MC4 LINE L1 6614 6703 -1339 330 26 0 0 chr13 17800215 17800254 -84072915 + (CATA)n Simple_repeat Simple_repeat 2 40 0 589 155 19 0 chr13 17800291 17800394 -84072775 + FLAM_A SINE Alu 24 128 -14 1783 126 69 39 chr13 17800417 17800781 -84072388 + THE1C LTR MaLR 1 375 0 2156 100 0 10 chr13 17801030 17801329 -84071840 + AluSg SINE Alu 1 296 -14 474 278 114 13 chr13 17801720 17801947 -84071222 + HAL1b LINE L1 599 848 -500 392 312 21 64 chr13 17802346 17802479 -84070690 + L1M4 LINE L1 2189 2309 -3837 1302 43 0 0 chr13 17802479 17802642 -84070527 + L1PA3 LINE L1 5993 6155 0 392 312 21 64 chr13 17802642 17802742 -84070427 + L1M4 LINE L1 2309 2412 -3734 1418 84 133 0 chr13 17803387 17803612 -84069557 + L1PA4 LINE L1 5896 6150 -5 450 226 23 15 chr13 17803639 17803772 -84069397 + L1ME2 LINE L1 27 160 -5959 714 264 67 17 chr13 17803832 17804177 -84068992 + L1ME2 LINE L1 892 1253 -4866 23 33 0 0 chr13 17804259 17804289 -84068880 + AT_rich Low_complexity Low_complexity 1 30 0 907 130 34 0 chr13 17804492 17804638 -84068531 + L1MC1 LINE L1 6182 6332 -1 24 0 0 0 chr13 17804827 17804851 -84068318 + AT_rich Low_complexity Low_complexity 1 24 0 278 268 102 19 chr13 17805095 17805412 -84067757 + L1ME2 LINE L1 2662 3014 -3115 452 331 91 15 chr13 17805740 17806069 -84067100 + L1ME2 LINE L1 3756 4109 -2020 734 259 83 30 chr13 17806079 17806380 -84066789 + L1MB7 LINE L1 2644 2960 -3186 1845 241 118 7 chr13 17806391 17806538 -84066631 + L1MB7 LINE L1 5522 5651 -533 1975 136 0 7 chr13 17806538 17806853 -84066316 - AluSx SINE Alu 0 313 1 1845 241 118 7 chr13 17806853 17807289 -84065880 + L1MB7 LINE L1 5651 6171 -13 883 274 126 29 chr13 17807294 17808147 -84065022 + L1ME2 LINE L1 4993 5937 -288 344 339 95 29 chr13 17808461 17808975 -84064194 + L1ME4a LINE L1 2372 2919 -3210 305 322 89 23 chr13 17809846 17810060 -84063109 + L1ME4a LINE L1 4462 4689 -1440 1674 230 130 54 chr13 17810880 17811562 -84061607 + HAL1b LINE L1 256 1033 -315 2148 102 0 0 chr13 17811562 17811857 -84061312 + AluY SINE Alu 1 295 -16 1674 230 130 54 chr13 17811857 17812133 -84061036 + HAL1b LINE L1 1033 1287 -61 397 272 124 54 chr13 17812618 17812853 -84060316 + L1ME4a LINE L1 5508 5725 -379 2115 133 0 0 chr13 17812853 17813153 -84060016 - AluSx SINE Alu -12 300 1 397 272 124 54 chr13 17813153 17813450 -84059719 + L1ME4a LINE L1 5725 6077 -27 2232 125 0 0 chr13 17813451 17813756 -84059413 - AluSx SINE Alu -6 306 2 252 0 0 0 chr13 17814141 17814169 -84059000 + (T)n Simple_repeat Simple_repeat 1 28 0 1411 183 47 14 chr13 17814430 17814709 -84058460 - AluJo SINE Alu -14 288 1 986 311 101 24 chr13 17815157 17815575 -84057594 - MLT1J2 LTR MaLR 0 450 1 2266 104 7 0 chr13 17815654 17815961 -84057208 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 17816921 17816945 -84056224 + AT_rich Low_complexity Low_complexity 1 24 0 364 341 42 47 chr13 17817235 17817449 -84055720 - L3 LINE CR1 -57 1520 1308 2174 233 103 15 chr13 17817464 17818078 -84055091 + Cheshire DNA MER1_type 40 707 -1713 877 107 0 129 chr13 17818139 17818317 -84054852 + AluJb SINE Alu 157 311 -1 381 284 115 7 chr13 17818357 17818505 -84054664 + MER58B DNA MER1_type 22 185 -156 2315 160 8 15 chr13 17818529 17818928 -84054241 - MER41E LTR ERV1 -116 396 1 1482 249 65 27 chr13 17819017 17819538 -84053631 - MER41E-int LTR ERV1 -1 6675 6135 1006 350 34 27 chr13 17819560 17820376 -84052793 - HUERS-P3 LTR ERV1 -3720 4036 3215 260 176 20 0 chr13 17820934 17820985 -84052184 - HUERS-P3 LTR ERV1 -2803 2151 2100 1055 295 35 47 chr13 17821109 17821727 -84051442 - HUERS-P3 LTR ERV1 -3958 2718 1854 260 267 89 52 chr13 17821813 17821948 -84051221 - HUERS-P3 LTR ERV1 -6036 1720 1581 335 309 0 16 chr13 17822214 17822337 -84050832 - HUERS-P3 LTR ERV1 -7114 1805 1685 1300 151 41 5 chr13 17822467 17822686 -84050483 - MER41E LTR ERV1 0 512 286 468 240 147 7 chr13 17822686 17822836 -84050333 + MER58B DNA MER1_type 171 341 0 1135 167 52 0 chr13 17823136 17823346 -84049823 - MER58A DNA MER1_type -3 221 1 300 383 29 40 chr13 17823406 17823683 -84049486 - L3 LINE CR1 -304 1273 1000 296 356 92 0 chr13 17823690 17823864 -84049305 - MIR SINE MIR -1 261 72 244 333 108 0 chr13 17824352 17824463 -84048706 + L1MD3 LINE L1 6722 6844 -1151 342 0 0 0 chr13 17825191 17825229 -84047940 + (AGTAG)n Simple_repeat Simple_repeat 1 38 0 1886 157 13 7 chr13 17825231 17825537 -84047632 + AluSx SINE Alu 1 308 -4 2347 80 3 0 chr13 17825659 17825959 -84047210 + AluSp SINE Alu 1 301 -12 284 314 78 0 chr13 17826693 17826795 -84046374 - MIR3 SINE MIR -7 201 92 560 154 0 0 chr13 17827139 17827230 -84045939 + MER33 DNA MER1_type 19 109 -215 2388 67 17 3 chr13 17827431 17827730 -84045439 - AluY SINE Alu -8 303 1 222 342 18 45 chr13 17827980 17828091 -84045078 - MIR SINE MIR -46 216 109 276 226 36 24 chr13 17828363 17828447 -84044722 + MER117 DNA MER1_type 10 94 -103 424 295 85 8 chr13 17828972 17829101 -84044068 - L2 LINE L2 0 3313 3175 1677 169 3 22 chr13 17829241 17829555 -84043614 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr13 17829658 17829679 -84043490 + AT_rich Low_complexity Low_complexity 1 21 0 2093 127 13 3 chr13 17829738 17830037 -84043132 + AluSp SINE Alu 1 302 -11 27 0 0 0 chr13 17830766 17830793 -84042376 + AT_rich Low_complexity Low_complexity 1 27 0 241 287 200 7 chr13 17831058 17831208 -84041961 - L2 LINE L2 -8 3305 3127 262 318 12 0 chr13 17831810 17831895 -84041274 - MIR3 SINE MIR -11 197 112 807 249 31 0 chr13 17832363 17832556 -84040613 - MER58A DNA MER1_type -23 201 3 212 204 21 129 chr13 17832560 17832653 -84040516 + MIR3 SINE MIR 113 195 -13 569 205 99 33 chr13 17834604 17834755 -84038414 + MIR3 SINE MIR 47 207 -1 426 191 117 0 chr13 17834906 17835000 -84038169 - MIR SINE MIR -6 256 152 295 222 0 20 chr13 17836925 17837024 -84036145 + CT-rich Low_complexity Low_complexity 2 98 0 430 331 39 39 chr13 17837028 17837288 -84035881 - MLT1L LTR MaLR -355 260 1 1355 152 141 4 chr13 17837768 17838031 -84035138 + AluJo SINE Alu 1 299 -13 28 0 0 0 chr13 17838622 17838650 -84034519 + AT_rich Low_complexity Low_complexity 1 28 0 2096 142 7 0 chr13 17840072 17840382 -84032787 - AluSx SINE Alu 0 312 1 600 243 7 7 chr13 17841509 17841645 -84031524 - MER58B DNA MER1_type 0 341 206 37 81 0 0 chr13 17843242 17843328 -84029841 + AT_rich Low_complexity Low_complexity 1 86 0 21 36 0 0 chr13 17843682 17843710 -84029459 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 17844755 17844778 -84028391 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 17845538 17845560 -84027609 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr13 17845979 17846024 -84027145 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr13 17846848 17846871 -84026298 + AT_rich Low_complexity Low_complexity 1 23 0 963 256 27 16 chr13 17847023 17847281 -84025888 - MIR SINE MIR 0 262 2 30 59 0 0 chr13 17847478 17847529 -84025640 + AT_rich Low_complexity Low_complexity 1 51 0 244 314 148 30 chr13 17848068 17848237 -84024932 + MIR SINE MIR 4 192 -70 325 387 46 29 chr13 17848483 17848721 -84024448 + L2 LINE L2 2813 3054 -218 2274 92 3 0 chr13 17849190 17849483 -84023686 - AluSc SINE Alu -15 294 1 546 307 56 30 chr13 17849521 17849752 -84023417 + MIR SINE MIR 20 256 -6 317 344 104 11 chr13 17850398 17850581 -84022588 - MIR SINE MIR -61 201 2 24 0 0 0 chr13 17852234 17852258 -84020911 + AT_rich Low_complexity Low_complexity 1 24 0 543 282 75 32 chr13 17852740 17853116 -84020053 + L1ME4a LINE L1 5726 6117 -4 274 319 89 22 chr13 17853518 17853653 -84019516 + MIR SINE MIR 8 151 -111 207 88 0 0 chr13 17853925 17853959 -84019210 + (A)n Simple_repeat Simple_repeat 1 34 0 265 236 14 42 chr13 17854060 17854132 -84019037 - L2 LINE L2 0 3313 3244 258 323 93 52 chr13 17854817 17855065 -84018104 - L3 LINE CR1 -301 1276 1019 5734 122 28 12 chr13 17855073 17856153 -84017016 - L1PB1 LINE L1 -3 6148 5053 589 329 108 23 chr13 17856162 17856515 -84016654 - L3 LINE CR1 -577 1000 618 35 41 0 0 chr13 17856575 17856624 -84016545 + AT_rich Low_complexity Low_complexity 1 49 0 1094 285 44 17 chr13 17858722 17859242 -84013927 + L1MEc LINE L1 582 1115 -5281 990 203 87 87 chr13 17859248 17859699 -84013470 + MLT1E3 LTR MaLR 7 452 -172 1901 153 0 3 chr13 17860416 17860710 -84012459 + AluJo SINE Alu 1 293 -19 184 171 24 0 chr13 17861313 17861354 -84011815 + MER5C DNA MER1_type 119 160 -164 21 0 0 0 chr13 17861453 17861474 -84011695 + AT_rich Low_complexity Low_complexity 1 21 0 228 189 56 22 chr13 17861817 17861907 -84011262 + (TATAA)n Simple_repeat Simple_repeat 5 97 0 488 343 163 6 chr13 17861997 17862523 -84010646 + L2 LINE L2 2602 3215 -98 4862 161 54 12 chr13 17862547 17863301 -84009868 - L1MA8 LINE L1 -29 6262 5459 2021 131 3 6 chr13 17863301 17863613 -84009556 - AluSx SINE Alu -1 311 1 4862 161 54 12 chr13 17863613 17863850 -84009319 - L1MA8 LINE L1 -832 5459 5233 29 0 0 0 chr13 17864020 17864049 -84009120 + AT_rich Low_complexity Low_complexity 1 29 0 6063 211 70 30 chr13 17864178 17865755 -84007414 + L1M4 LINE L1 61 1700 -4842 203 175 0 0 chr13 17867452 17867492 -84005677 + T-rich Low_complexity Low_complexity 2 41 0 346 364 99 20 chr13 17868500 17868794 -84004375 - L3 LINE CR1 -877 700 384 184 286 0 18 chr13 17868868 17868924 -84004245 - MIR3 SINE MIR -31 177 123 212 271 83 90 chr13 17868955 17869088 -84004081 - MIR SINE MIR -3 259 128 2149 124 7 0 chr13 17869785 17870091 -84003078 - AluSq SINE Alu -5 308 1 282 376 27 32 chr13 17870902 17871088 -84002081 + MIR3 SINE MIR 22 206 -2 2031 86 54 0 chr13 17871914 17872194 -84000975 - AluSg1 SINE Alu -14 295 1 213 261 31 0 chr13 17872601 17872666 -84000503 + (TATG)n Simple_repeat Simple_repeat 2 68 0 348 390 6 17 chr13 17875944 17876121 -83997048 + MIR3 SINE MIR 21 195 -13 2128 287 91 11 chr13 17876966 17878046 -83995123 + L2 LINE L2 2099 3313 0 1833 147 22 0 chr13 17878384 17878656 -83994513 + Charlie3 DNA MER1_type 1 278 -2432 2599 78 6 14 chr13 17878656 17879014 -83994155 - THE1A LTR MaLR 0 355 1 738 333 111 8 chr13 17879777 17880128 -83993041 - L3 LINE CR1 -238 1339 953 381 286 48 39 chr13 17880135 17880406 -83992763 - MIR SINE MIR -2 260 24 220 426 0 0 chr13 17880644 17880759 -83992410 - L3 LINE CR1 -978 599 485 2080 136 7 0 chr13 17882335 17882643 -83990526 + AluSx SINE Alu 3 312 0 24 0 0 0 chr13 17882964 17882988 -83990181 + AT_rich Low_complexity Low_complexity 1 24 0 249 33 0 0 chr13 17884672 17884702 -83988467 + (TG)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chr13 17885386 17885414 -83987755 + AT_rich Low_complexity Low_complexity 1 28 0 2011 116 0 17 chr13 17885927 17886221 -83986948 + AluSx SINE Alu 1 289 -23 234 0 0 0 chr13 17886395 17886421 -83986748 + (CA)n Simple_repeat Simple_repeat 2 27 0 1888 262 99 36 chr13 17886435 17888085 -83985084 - L1ME3A LINE L1 -8 6162 4409 2480 252 38 18 chr13 17888163 17888922 -83984247 - L1ME1 LINE L1 -28 6207 5434 859 232 84 48 chr13 17888950 17889801 -83983368 - L1ME1 LINE L1 -852 5363 4455 465 206 9 0 chr13 17889836 17889943 -83983226 + L1ME2 LINE L1 5881 5988 -176 24 32 0 0 chr13 17889998 17890029 -83983140 + AT_rich Low_complexity Low_complexity 1 31 0 778 277 59 22 chr13 17890153 17890659 -83982510 - L1ME1 LINE L1 -2566 3649 3125 925 239 43 0 chr13 17890664 17890873 -83982296 + MER58A DNA MER1_type 6 223 -1 474 229 75 43 chr13 17890875 17891063 -83982106 - L1ME1 LINE L1 -3084 3131 2938 * 2668 223 52 12 chr13 17891034 17892030 -83981139 - L1MD2 LINE L1 -440 5988 4956 711 328 67 49 chr13 17892032 17892705 -83980464 - L1ME1 LINE L1 -5711 685 1 854 318 34 25 chr13 17892732 17893258 -83979911 - L1MD2 LINE L1 -1831 4298 3768 337 290 12 12 chr13 17893314 17893559 -83979610 - L1MD2 LINE L1 -2585 3544 3258 246 39 0 59 chr13 17893578 17893629 -83979540 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 590 212 106 23 chr13 17893747 17893879 -83979290 - MER5A DNA MER1_type 0 189 47 1503 244 60 71 chr13 17893879 17894400 -83978769 - MLT2B1 LTR ERVL 0 520 6 289 196 0 0 chr13 17894405 17894456 -83978713 - MER5A DNA MER1_type -138 51 1 644 279 55 54 chr13 17894659 17895388 -83977781 - L1MD2 LINE L1 -4573 1737 971 2178 124 3 0 chr13 17895458 17895764 -83977405 + AluSg SINE Alu 1 307 -3 272 221 23 23 chr13 17896351 17896437 -83976732 - L1MD2 LINE L1 -5943 176 91 1514 264 70 68 chr13 17896679 17897241 -83975928 - L1MEc LINE L1 -3823 3118 2558 1999 131 3 13 chr13 17897241 17897547 -83975622 + AluSx SINE Alu 1 303 -9 1514 264 70 68 chr13 17897547 17898130 -83975039 - L1MEc LINE L1 -4383 2558 2010 1733 244 81 51 chr13 17898130 17898736 -83974433 - MLT1E2 LTR MaLR 0 626 3 1514 264 70 68 chr13 17898736 17898989 -83974180 - L1MEc LINE L1 -4931 2010 1759 1693 251 114 9 chr13 17899005 17899661 -83973508 - L1MEc LINE L1 -4887 1536 812 1173 296 57 35 chr13 17899767 17900332 -83972837 - L1MEc LINE L1 -5824 599 23 23 33 0 0 chr13 17900375 17900405 -83972764 + AT_rich Low_complexity Low_complexity 1 30 0 692 283 105 70 chr13 17900462 17900845 -83972324 - LTR16A LTR ERVL -54 396 1 22 0 0 0 chr13 17900845 17900867 -83972302 + AT_rich Low_complexity Low_complexity 1 22 0 608 256 0 0 chr13 17901174 17901291 -83971878 - FAM SINE Alu -65 120 4 21 36 0 0 chr13 17901670 17901698 -83971471 + AT_rich Low_complexity Low_complexity 1 28 0 1735 140 23 29 chr13 17902775 17903082 -83970087 - L1PB4 LINE L1 0 6156 5852 1825 163 0 23 chr13 17903419 17903726 -83969443 - AluJo SINE Alu -12 300 1 21 0 0 0 chr13 17903905 17903926 -83969243 + AT_rich Low_complexity Low_complexity 1 21 0 752 167 70 54 chr13 17905182 17905368 -83967801 + MER5A DNA MER1_type 1 189 0 695 250 156 0 chr13 17905999 17906191 -83966978 - MIR SINE MIR -10 252 31 24 96 0 0 chr13 17906797 17906870 -83966299 + AT_rich Low_complexity Low_complexity 1 73 0 599 271 97 14 chr13 17907818 17908025 -83965144 + MIR SINE MIR 15 238 -24 760 317 38 92 chr13 17908043 17908542 -83964627 - L2 LINE L2 -22 3291 2820 234 225 72 65 chr13 17908840 17908978 -83964191 - L2 LINE L2 -80 3233 3095 2092 82 0 34 chr13 17910801 17911150 -83962019 - AluY SINE Alu 0 339 1 23 0 0 0 chr13 17911265 17911288 -83961881 + AT_rich Low_complexity Low_complexity 1 23 0 1360 169 28 0 chr13 17911408 17911656 -83961513 + AluJo SINE Alu 39 293 -19 22 35 0 0 chr13 17913178 17913207 -83959962 + AT_rich Low_complexity Low_complexity 1 29 0 27 92 0 0 chr13 17913397 17913473 -83959696 + AT_rich Low_complexity Low_complexity 1 76 0 820 323 104 9 chr13 17913931 17914393 -83958776 + L1MC4 LINE L1 6493 6998 -1044 791 266 116 55 chr13 17915255 17915835 -83957334 + L1MC5 LINE L1 6903 7517 -444 319 256 58 58 chr13 17915931 17916052 -83957117 + L1ME3 LINE L1 5961 6081 -81 24 32 0 0 chr13 17916095 17916126 -83957043 + AT_rich Low_complexity Low_complexity 1 31 0 244 143 41 0 chr13 17916165 17916214 -83956955 + L1M4 LINE L1 4490 4540 -1606 40 37 0 0 chr13 17916240 17916294 -83956875 + AT_rich Low_complexity Low_complexity 1 54 0 320 284 136 52 chr13 17916356 17916666 -83956503 + L1M4 LINE L1 4728 5063 -1083 2980 240 65 47 chr13 17917125 17919394 -83953775 + L1MB2 LINE L1 801 3160 -3222 3382 191 49 9 chr13 17919461 17920277 -83952892 - L1 LINE L1 -1161 4985 4137 * 11500 136 139 4 chr13 17920266 17922447 -83950722 - L1PBa LINE L1 -3791 3071 598 259 354 48 20 chr13 17922933 17923080 -83950089 + L2 LINE L2 3118 3268 -4 24 0 0 0 chr13 17923618 17923642 -83949527 + AT_rich Low_complexity Low_complexity 1 24 0 981 252 67 0 chr13 17923704 17923986 -83949183 - MER46C DNA MER2_type -33 305 5 311 121 17 0 chr13 17924107 17924165 -83949004 + (CA)n Simple_repeat Simple_repeat 2 60 0 896 177 24 0 chr13 17924177 17924341 -83948828 + MER58B DNA MER1_type 173 340 -1 26 88 0 0 chr13 17924539 17924607 -83948562 + AT_rich Low_complexity Low_complexity 1 68 0 746 188 7 0 chr13 17925273 17925411 -83947758 + AluJo SINE Alu 1 139 -173 272 246 0 0 chr13 17925411 17925468 -83947701 + AluJ/monomer SINE Alu 241 297 -3 2203 187 52 2 chr13 17925672 17926116 -83947053 - L1PBa LINE L1 -6395 468 3 1052 255 42 7 chr13 17926129 17926675 -83946494 + L1MB2 LINE L1 3431 4139 -2243 2353 197 31 69 chr13 17926712 17926900 -83946269 + L1MB2 LINE L1 4879 5072 -1337 240 86 0 0 chr13 17926900 17926935 -83946234 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2353 197 31 69 chr13 17926935 17927176 -83945993 + L1MB2 LINE L1 5072 5320 -1089 2170 121 3 0 chr13 17927176 17927481 -83945688 + AluSp SINE Alu 1 306 -7 2353 197 31 69 chr13 17927481 17927791 -83945378 + L1MB2 LINE L1 5320 5587 -822 3477 159 45 13 chr13 17927838 17928534 -83944635 + L1MB2 LINE L1 5683 6400 -7 612 295 74 32 chr13 17928540 17929121 -83944048 + L1ME LINE L1 5191 5797 -365 2125 146 24 11 chr13 17930360 17930730 -83942439 - THE1C LTR MaLR 0 375 1 840 169 38 19 chr13 17931508 17931668 -83941501 + Tigger1 DNA MER2_type 1 163 -2255 * 1128 176 23 9 chr13 17931647 17931863 -83941306 + Tigger1 DNA MER2_type 2200 2418 0 826 226 98 0 chr13 17931909 17932113 -83941056 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr13 17932564 17932585 -83940584 + AT_rich Low_complexity Low_complexity 1 21 0 1688 164 26 22 chr13 17932619 17932930 -83940239 - AluJo SINE Alu 0 312 1 35 0 0 0 chr13 17933197 17933232 -83939937 + AT_rich Low_complexity Low_complexity 1 35 0 4102 218 70 104 chr13 17933583 17935399 -83937770 - MER52A LTR ERV1 0 1755 1 21 36 0 0 chr13 17935670 17935698 -83937471 + AT_rich Low_complexity Low_complexity 1 28 0 27 96 0 0 chr13 17936298 17936381 -83936788 + AT_rich Low_complexity Low_complexity 1 83 0 340 294 122 46 chr13 17936420 17936479 -83936690 - MER58C DNA MER1_type -2206 214 161 2113 106 10 0 chr13 17936479 17936772 -83936397 - AluSg SINE Alu -14 296 1 340 294 122 46 chr13 17936772 17936909 -83936260 - MER58C DNA MER1_type -2259 161 3 1692 172 114 12 chr13 17937056 17937388 -83935781 + MER47A DNA MER2_type 1 366 0 29 60 0 0 chr13 17937939 17937989 -83935180 + AT_rich Low_complexity Low_complexity 1 50 0 1382 310 62 51 chr13 17938689 17939538 -83933631 + L1MEc LINE L1 107 974 -5422 1958 134 7 0 chr13 17939538 17939822 -83933347 + AluSx SINE Alu 1 286 -26 1382 310 62 51 chr13 17939822 17940126 -83933043 + L1MEc LINE L1 974 1273 -5123 1930 236 45 48 chr13 17940317 17941084 -83932085 + L1MD2 LINE L1 5330 6115 -51 1958 241 44 2 chr13 17941090 17941616 -83931553 + L1MB3 LINE L1 4437 4984 -1162 * 11586 201 60 8 chr13 17941596 17945031 -83928138 + L1MA8 LINE L1 2493 6125 -166 2232 140 42 28 chr13 17945031 17945459 -83927710 - Tigger2a DNA MER2_type 0 434 1 11586 201 60 8 chr13 17945459 17945620 -83927549 + L1MA8 LINE L1 6125 6276 -15 4340 189 32 19 chr13 17945648 17946766 -83926403 + L1MB3 LINE L1 5052 6179 -4 958 248 23 8 chr13 17947076 17947334 -83925835 + L1MEc LINE L1 1535 1796 -4600 372 219 0 0 chr13 17947349 17947422 -83925747 - Tigger5 DNA MER2_type 0 2323 2251 360 265 164 27 chr13 17947469 17947688 -83925481 + L1M4 LINE L1 3899 4147 -1999 13473 149 15 23 chr13 17948596 17950960 -83922209 + L1P2 LINE L1 12 2357 -3789 22244 75 7 4 chr13 17951076 17954275 -83918894 + L1P2 LINE L1 2301 5506 -648 1145 46 0 20 chr13 17954275 17954421 -83918748 + L1PA6 LINE L1 6006 6153 -1 2297 100 3 0 chr13 17955745 17956054 -83917115 + AluSp SINE Alu 1 310 -3 2019 128 3 3 chr13 17956210 17956499 -83916670 + AluSq SINE Alu 1 289 -24 325 141 28 0 chr13 17956499 17956570 -83916599 + (TA)n Simple_repeat Simple_repeat 2 74 0 1122 259 47 7 chr13 17957170 17957471 -83915698 - MER58B DNA MER1_type 0 341 29 407 253 84 42 chr13 17957476 17957642 -83915527 - MER112 DNA MER1_type -9 251 79 337 318 32 16 chr13 17957694 17957820 -83915349 - MIR SINE MIR -63 145 18 23 33 0 0 chr13 17958407 17958437 -83914732 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr13 17958762 17958794 -83914375 + AT_rich Low_complexity Low_complexity 1 32 0 188 268 21 113 chr13 17960426 17960523 -83912646 + L2 LINE L2 3222 3309 -4 309 51 0 0 chr13 17961051 17961090 -83912079 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 397 321 71 9 chr13 17962026 17962214 -83910955 + MIR SINE MIR 9 205 -57 21 0 0 0 chr13 17962984 17963005 -83910164 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 17963637 17963661 -83909508 + AT_rich Low_complexity Low_complexity 1 24 0 408 264 35 76 chr13 17963903 17964047 -83909122 + MIR SINE MIR 125 262 0 31 0 0 0 chr13 17964154 17964185 -83908984 + AT_rich Low_complexity Low_complexity 1 31 0 411 20 0 0 chr13 17964437 17964486 -83908683 + L1P LINE L1 4009 4057 -2089 28 0 0 0 chr13 17964577 17964605 -83908564 + AT_rich Low_complexity Low_complexity 1 28 0 35 71 0 0 chr13 17965003 17965073 -83908096 + AT_rich Low_complexity Low_complexity 1 70 0 787 87 4 8 chr13 17969242 17969368 -83903801 + MER30B DNA MER1_type 6 110 -80 227 158 66 0 chr13 17969383 17969459 -83903710 + (TA)n Simple_repeat Simple_repeat 1 81 0 2116 94 31 0 chr13 17970400 17970688 -83902481 + AluSg SINE Alu 8 304 -6 796 221 39 63 chr13 17971219 17971473 -83901696 - L1MD2 LINE L1 -24 6335 6088 594 153 9 0 chr13 17972108 17972219 -83900950 - L1MB4 LINE L1 -1 6179 6068 1173 162 14 19 chr13 17972219 17972435 -83900734 - Tigger2 DNA MER2_type -15 2703 2489 339 25 0 0 chr13 17972455 17972495 -83900674 + (TG)n Simple_repeat Simple_repeat 2 41 0 228 67 0 0 chr13 17972494 17972524 -83900645 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1234 102 0 0 chr13 17974442 17974609 -83898560 + AluSg/x SINE Alu 131 297 -15 5789 56 6 0 chr13 17975442 17976174 -83896995 - L1PA8 LINE L1 0 6172 5437 321 68 0 0 chr13 17978602 17978646 -83894523 + (TG)n Simple_repeat Simple_repeat 1 44 0 1064 130 7 0 chr13 17978646 17978800 -83894369 - AluSg/x SINE Alu -33 279 125 27 29 0 0 chr13 17979011 17979045 -83894124 + AT_rich Low_complexity Low_complexity 1 34 0 316 279 130 57 chr13 17979120 17979557 -83893612 - HAL1 LINE L1 -120 2387 1919 817 313 66 18 chr13 17979728 17980063 -83893106 + MLT1I LTR MaLR 59 409 0 430 216 103 0 chr13 17980067 17980183 -83892986 - HAL1 LINE L1 -784 1723 1596 691 229 146 55 chr13 17980375 17980759 -83892410 - HAL1 LINE L1 -973 1534 1116 1242 163 0 0 chr13 17982709 17982975 -83890194 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 48 0 0 chr13 17984337 17984379 -83888790 + AT_rich Low_complexity Low_complexity 1 42 0 33 0 0 0 chr13 17985584 17985617 -83887552 + AT_rich Low_complexity Low_complexity 1 33 0 2136 113 0 20 chr13 17985842 17986142 -83887027 + AluSq SINE Alu 1 294 -19 243 420 0 10 chr13 17986313 17986413 -83886756 - L2 LINE L2 -11 3261 3163 711 320 86 31 chr13 17986840 17987349 -83885820 - L2 LINE L2 -626 2688 2152 546 331 107 32 chr13 17987350 17987697 -83885472 + L2 LINE L2 2929 3301 -12 181 184 26 0 chr13 17987810 17987848 -83885321 - L2 LINE L2 -1385 1929 1891 201 340 0 0 chr13 17987898 17987951 -83885218 - L2 LINE L2 -86 3186 3134 228 352 207 26 chr13 17988055 17988597 -83884572 - L2 LINE L2 -1442 1872 1233 284 308 33 0 chr13 17988880 17988971 -83884198 + MIR SINE MIR 48 141 -121 31223 108 10 59 chr13 17990382 17996838 -83876331 - L1PA7 LINE L1 -4 6150 19 1938 154 0 0 chr13 17997126 17997419 -83875750 - AluJb SINE Alu -19 293 1 4579 20 2 2 chr13 17997453 17998010 -83875159 + L1PA3 LINE L1 5612 6155 0 609 110 50 0 chr13 17999583 17999683 -83873486 - L1MA3 LINE L1 0 6305 6201 847 246 40 11 chr13 17999696 17999973 -83873196 + L1ME1 LINE L1 3558 3842 -2304 3672 241 45 19 chr13 17999981 18001015 -83872154 - L1PA16 LINE L1 -1052 5094 4034 5719 138 23 1 chr13 18001018 18002052 -83871117 + L1PA16 LINE L1 5102 6157 -9 2075 227 125 47 chr13 18002074 18002644 -83870525 + L1ME1 LINE L1 3847 4516 -1630 1730 120 36 0 chr13 18002644 18002919 -83870250 + L1MA2 LINE L1 6018 6302 -2 2075 227 125 47 chr13 18002919 18003257 -83869912 + L1ME1 LINE L1 4516 4826 -1320 3347 218 61 8 chr13 18003258 18004097 -83869072 + L1ME1 LINE L1 5280 6162 -4 187 261 0 0 chr13 18004255 18004301 -83868868 + L2 LINE L2 3227 3272 0 396 226 30 131 chr13 18004399 18004598 -83868571 + MIR SINE MIR 84 262 0 199 411 82 0 chr13 18005619 18005765 -83867404 - MIR3 SINE MIR -28 180 23 206 341 178 19 chr13 18006579 18006787 -83866382 - L2 LINE L2 -340 2974 2734 182 360 67 47 chr13 18006940 18007090 -83866079 - L2 LINE L2 -660 2654 2502 6647 138 13 13 chr13 18007670 18008545 -83864624 - L1MA2 LINE L1 0 6304 5431 1948 150 0 0 chr13 18008545 18008839 -83864330 - AluSx SINE Alu -18 294 1 6647 138 13 13 chr13 18008839 18009833 -83863336 - L1MA2 LINE L1 -873 5431 4433 497 230 30 0 chr13 18009835 18009935 -83863234 + Tigger5 DNA MER2_type 2221 2323 0 2315 243 43 0 chr13 18010001 18010531 -83862638 + L1MB7 LINE L1 495 1047 -5495 306 200 88 72 chr13 18010533 18010658 -83862511 + L1MB7 LINE L1 1075 1201 -5341 3554 160 20 8 chr13 18010666 18011303 -83861866 + L1PA15 LINE L1 5517 6161 -4 6132 238 51 40 chr13 18011317 18013700 -83859469 + L1MB7 LINE L1 2506 4909 -1735 3573 193 43 23 chr13 18013696 18013800 -83859369 + L1MB3 LINE L1 5366 5466 -717 * 2575 128 26 14 chr13 18013800 18014223 -83858946 - MSTA LTR MaLR 0 428 1 3573 193 43 23 chr13 18014223 18014916 -83858253 + L1MB3 LINE L1 5466 6179 -4 4105 205 46 25 chr13 18014929 18016663 -83856506 + L1MB7 LINE L1 4914 6682 0 737 316 63 16 chr13 18017191 18017745 -83855424 + L1M4 LINE L1 2131 2710 -3436 3765 116 9 8 chr13 18017768 18018296 -83854873 + MER1A DNA MER1_type 1 529 0 21 0 0 0 chr13 18018397 18018418 -83854751 + AT_rich Low_complexity Low_complexity 1 21 0 925 284 61 56 chr13 18018457 18019569 -83853600 + L1M4 LINE L1 2909 4026 -2120 183 42 0 0 chr13 18019689 18019713 -83853456 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 18021358 18021387 -83851782 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 18021797 18021824 -83851345 + AT_rich Low_complexity Low_complexity 1 27 0 276 130 0 0 chr13 18021937 18021983 -83851186 + (TCC)n Simple_repeat Simple_repeat 1 46 0 999 251 107 31 chr13 18022000 18022459 -83850710 - MLT1G1 LTR MaLR -45 504 1 24 32 0 0 chr13 18022601 18022632 -83850537 + AT_rich Low_complexity Low_complexity 1 31 0 237 254 18 0 chr13 18022829 18022884 -83850285 - L3b LINE CR1 -1 1582 1527 345 152 30 0 chr13 18022892 18022958 -83850211 - MER53 DNA DNA -101 88 21 22 0 0 0 chr13 18022976 18022998 -83850171 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 18023242 18023269 -83849900 + AT_rich Low_complexity Low_complexity 1 27 0 558 214 23 54 chr13 18024577 18024809 -83848360 - MER106B DNA MER1_type 0 1059 11 25 83 0 0 chr13 18024864 18024924 -83848245 + AT_rich Low_complexity Low_complexity 1 60 0 405 0 0 0 chr13 18025004 18025049 -83848120 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 95 0 0 chr13 18025646 18025709 -83847460 + AT_rich Low_complexity Low_complexity 1 63 0 194 224 35 17 chr13 18025858 18025916 -83847253 - MIR3 SINE MIR -30 178 120 28 0 0 0 chr13 18026692 18026720 -83846449 + AT_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr13 18027186 18027212 -83845957 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2194 100 3 0 chr13 18027431 18027720 -83845449 + AluSx SINE Alu 3 292 -20 485 258 47 53 chr13 18027907 18028097 -83845072 - MIR SINE MIR -8 254 66 2117 161 45 8 chr13 18028098 18028477 -83844692 - MLT2C1 LTR ERVL 0 397 5 1824 237 35 89 chr13 18028991 18029642 -83843527 + L2 LINE L2 2131 2746 -568 948 210 36 0 chr13 18029645 18029840 -83843329 - MER3 DNA MER1_type 0 209 8 869 302 120 38 chr13 18029845 18030372 -83842797 + L2 LINE L2 2742 3313 0 26 30 0 0 chr13 18030451 18030484 -83842685 + AT_rich Low_complexity Low_complexity 1 33 0 691 248 250 36 chr13 18030979 18031391 -83841778 + L2 LINE L2 2814 3313 0 193 267 67 0 chr13 18031497 18031542 -83841627 + MIR SINE MIR 64 111 -151 2997 84 23 0 chr13 18031577 18032006 -83841163 - L1PA13 LINE L1 -1 6162 5724 235 326 31 31 chr13 18032015 18032144 -83841025 + MIR SINE MIR 102 230 -32 1143 101 0 19 chr13 18032300 18032458 -83840711 - AluSg/x SINE Alu -18 294 140 1190 109 0 0 chr13 18032559 18032715 -83840454 + AluSg/x SINE Alu 136 291 -19 673 300 40 9 chr13 18032949 18033172 -83839997 - L2 LINE L2 -413 2901 2672 366 23 0 0 chr13 18033804 18033847 -83839322 + (TG)n Simple_repeat Simple_repeat 1 43 0 427 311 48 24 chr13 18033967 18034134 -83839035 - MIR SINE MIR -70 192 22 1561 257 96 51 chr13 18034280 18035370 -83837799 + L1ME1 LINE L1 795 1929 -4477 1171 235 59 47 chr13 18035392 18035851 -83837318 + L1ME1 LINE L1 5116 5629 -853 690 263 21 16 chr13 18035843 18036033 -83837136 + L1ME1 LINE L1 6218 6408 -18 * 189 147 0 0 chr13 18036316 18036350 -83836819 + (TATATG)n Simple_repeat Simple_repeat 6 39 0 21 0 0 0 chr13 18036435 18036456 -83836713 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 18036817 18036840 -83836329 + AT_rich Low_complexity Low_complexity 1 23 0 189 364 129 0 chr13 18037916 18038056 -83835113 - L2 LINE L2 -880 2434 2277 259 348 205 28 chr13 18038295 18038827 -83834342 - L2 LINE L2 -2158 1156 531 23 0 0 0 chr13 18040597 18040620 -83832549 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 18042540 18042577 -83830592 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr13 18042812 18042864 -83830305 + AT_rich Low_complexity Low_complexity 1 52 0 3840 198 88 10 chr13 18042998 18043909 -83829260 - L1 LINE L1 -1088 5760 4779 * 16285 186 22 10 chr13 18043904 18047318 -83825851 - L1 LINE L1 -3390 3458 5 1599 129 3 77 chr13 18047321 18047410 -83825759 - Tigger2a DNA MER2_type -2420 288 194 1923 141 3 0 chr13 18047410 18047720 -83825449 + AluJb SINE Alu 1 311 0 1599 129 3 77 chr13 18047720 18047939 -83825230 - Tigger2a DNA MER2_type -2514 194 2 * 2452 180 71 16 chr13 18047939 18048550 -83824619 - Tigger1 DNA MER2_type -1435 983 5 23 0 0 0 chr13 18049047 18049070 -83824099 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 18050021 18050046 -83823123 + AT_rich Low_complexity Low_complexity 1 25 0 1288 264 141 16 chr13 18052639 18053411 -83819758 - L1ME3 LINE L1 -3 6228 5351 236 235 94 0 chr13 18056054 18056139 -83817030 - L1ME3 LINE L1 -866 5349 5257 2095 274 87 46 chr13 18056151 18056791 -83816378 - L1ME3 LINE L1 -1002 5213 4601 2054 113 0 10 chr13 18056791 18057103 -83816066 + AluSx SINE Alu 1 309 0 2095 274 87 46 chr13 18057103 18057679 -83815490 - L1ME3 LINE L1 -1614 4601 3945 2233 105 0 0 chr13 18061150 18061454 -83811715 - AluSx SINE Alu -8 304 1 24 0 0 0 chr13 18062011 18062035 -83811134 + AT_rich Low_complexity Low_complexity 1 24 0 1581 187 6 16 chr13 18062046 18062361 -83810808 + AluJo SINE Alu 1 312 0 33 43 0 0 chr13 18062693 18062740 -83810429 + AT_rich Low_complexity Low_complexity 1 47 0 306 0 0 0 chr13 18066599 18066633 -83806536 + (TG)n Simple_repeat Simple_repeat 2 35 0 2064 150 0 0 chr13 18067623 18067930 -83805239 + AluSx SINE Alu 3 309 -3 23 0 0 0 chr13 18068772 18068795 -83804374 + AT_rich Low_complexity Low_complexity 1 23 0 719 287 0 0 chr13 18069128 18069316 -83803853 + MER46C DNA MER2_type 137 324 -14 2868 258 41 39 chr13 18071375 18071817 -83801352 - L1ME3 LINE L1 -2995 3220 2780 2388 119 94 8 chr13 18071817 18072211 -83800958 + MSTA LTR MaLR 1 428 0 2868 258 41 39 chr13 18072211 18072697 -83800472 - L1ME3 LINE L1 -3435 2780 2328 648 218 0 0 chr13 18072697 18072821 -83800348 - FLAM_A SINE Alu -8 125 2 2868 258 41 39 chr13 18072821 18073193 -83799976 - L1ME3 LINE L1 -3887 2328 1958 405 309 72 21 chr13 18073210 18073446 -83799723 - L1ME3 LINE L1 -5820 385 138 1077 323 127 10 chr13 18073520 18074239 -83798930 + L2 LINE L2 2501 3309 -4 10531 111 82 5 chr13 18074240 18075892 -83797277 - Tigger1 DNA MER2_type 0 2418 640 1752 138 82 31 chr13 18075892 18076247 -83796922 - THE1C LTR MaLR 0 375 3 3604 148 19 0 chr13 18076249 18076831 -83796338 - Tigger1 DNA MER2_type -1771 647 55 189 0 0 0 chr13 18076831 18076852 -83796317 + (A)n Simple_repeat Simple_repeat 1 21 0 272 286 170 14 chr13 18076897 18077044 -83796125 + MIR SINE MIR 63 232 -30 185 307 78 48 chr13 18077663 18077829 -83795340 + L2 LINE L2 3122 3292 -21 187 343 27 14 chr13 18077836 18077909 -83795260 - L2 LINE L2 -38 3234 3161 259 167 61 45 chr13 18078064 18078130 -83795039 + MER103 DNA DNA 8 74 -92 27 0 0 0 chr13 18078766 18078793 -83794376 + AT_rich Low_complexity Low_complexity 1 27 0 44 35 0 0 chr13 18079796 18079854 -83793315 + AT_rich Low_complexity Low_complexity 1 58 0 217 336 41 33 chr13 18079888 18080010 -83793159 - L2 LINE L2 -12 3301 3179 7582 21 6 2 chr13 18080065 18081392 -83791777 + L1PA3 LINE L1 4823 6152 -3 230 202 0 0 chr13 18081933 18081979 -83791190 - MIR SINE MIR -118 90 45 204 40 0 0 chr13 18081994 18082019 -83791150 + (CTG)n Simple_repeat Simple_repeat 2 26 0 330 297 135 0 chr13 18082021 18082132 -83791037 - MIR SINE MIR -25 237 112 23 33 0 0 chr13 18082380 18082410 -83790759 + AT_rich Low_complexity Low_complexity 1 30 0 2200 70 10 3 chr13 18082942 18083244 -83789925 - L1PB1 LINE L1 -4 6147 5844 2121 115 0 28 chr13 18083572 18083893 -83789276 - AluSx SINE Alu 0 312 1 5936 92 24 3 chr13 18084315 18086133 -83787036 + L1PA13 LINE L1 4317 6160 -3 7330 128 39 40 chr13 18087153 18088088 -83785081 - HSMAR2 DNA Mariner -1 1301 367 1655 170 3 48 chr13 18088088 18088271 -83784898 - AluJb SINE Alu -15 297 132 212 0 36 0 chr13 18088271 18088299 -83784870 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1655 170 3 48 chr13 18088299 18088426 -83784743 - AluJb SINE Alu -180 132 1 7330 128 39 40 chr13 18088426 18088785 -83784384 - HSMAR2 DNA Mariner -935 367 9 255 298 41 41 chr13 18089142 18089263 -83783906 + L2 LINE L2 3151 3271 -1 864 241 46 30 chr13 18089414 18089664 -83783505 + MIR SINE MIR 1 254 -8 538 312 38 0 chr13 18089691 18089848 -83783321 - MLT1I LTR MaLR -206 203 41 25457 48 4 5 chr13 18090862 18094930 -83778239 - L1PA5 LINE L1 -3 6151 2127 308 269 10 67 chr13 18095109 18095213 -83777956 + L2 LINE L2 3169 3266 -6 1865 182 14 20 chr13 18095449 18095483 -83777686 - MLT1A1 LTR MaLR 0 365 332 1760 110 116 12 chr13 18095483 18095810 -83777359 - MER46B DNA MER2_type 0 236 1 1865 182 14 20 chr13 18095810 18096127 -83777042 - MLT1A1 LTR MaLR -33 332 16 1811 247 45 15 chr13 18096538 18097882 -83775287 - L1MDa LINE L1 -1780 4760 3273 * 3488 204 68 4 chr13 18097878 18098753 -83774416 - L1MDa LINE L1 -909 1992 1573 44097 37 3 0 chr13 18098779 18104911 -83768258 - L1PA4 LINE L1 -3 6152 1 5112 217 122 11 chr13 18104915 18106246 -83766923 - L1MDa LINE L1 -4984 1556 116 1225 95 0 6 chr13 18106259 18106428 -83766741 - L1PB1 LINE L1 -6 6145 5978 306 0 0 0 chr13 18106429 18106463 -83766706 + (TG)n Simple_repeat Simple_repeat 2 35 0 3377 145 25 8 chr13 18106466 18107212 -83765957 - L1PB1 LINE L1 -371 5780 5017 385 200 24 12 chr13 18107211 18107296 -83765873 - L1MDa LINE L1 -6412 128 43 * 284 358 83 0 chr13 18107757 18107866 -83765303 - L2 LINE L2 -1 3271 3154 204 40 0 0 chr13 18108721 18108746 -83764423 + (TA)n Simple_repeat Simple_repeat 2 26 0 219 210 25 12 chr13 18109442 18109523 -83763646 + (TA)n Simple_repeat Simple_repeat 2 83 0 22 35 0 0 chr13 18109987 18110016 -83763153 + AT_rich Low_complexity Low_complexity 1 29 0 695 277 104 34 chr13 18111551 18111639 -83761530 + L1MC4 LINE L1 7565 7645 -397 233 0 62 0 chr13 18111639 18111671 -83761498 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1969 79 68 8 chr13 18111673 18111938 -83761231 - AluSq SINE Alu -32 281 1 695 277 104 34 chr13 18111938 18112286 -83760883 + L1MC4 LINE L1 7645 8035 -7 400 302 0 28 chr13 18112430 18112596 -83760573 + L1ME LINE L1 5513 5662 -459 2493 50 7 0 chr13 18113054 18113353 -83759816 + AluY SINE Alu 1 301 -10 236 330 78 0 chr13 18115602 18115717 -83757452 - L2 LINE L2 -1 3271 3148 555 166 12 117 chr13 18115724 18115887 -83757282 + MER20 DNA MER1_type 73 218 -1 183 360 99 41 chr13 18115887 18116129 -83757040 - L2 LINE L2 -116 3156 2901 1018 48 0 0 chr13 18116240 18116366 -83756803 + L1PA5 LINE L1 6026 6151 -3 21 0 0 0 chr13 18116472 18116493 -83756676 + AT_rich Low_complexity Low_complexity 1 21 0 2336 99 0 0 chr13 18116502 18116805 -83756364 - AluSq SINE Alu -10 303 1 218 269 0 0 chr13 18118642 18118694 -83754475 + CT-rich Low_complexity Low_complexity 1 52 0 192 189 0 0 chr13 18121595 18121632 -83751537 - L2 LINE L2 -94 3219 3183 232 308 68 55 chr13 18121955 18122101 -83751068 - MIR SINE MIR -5 257 110 188 257 129 29 chr13 18122164 18122234 -83750935 - MIR3 SINE MIR -43 165 89 437 62 15 0 chr13 18122397 18122462 -83750707 + (TA)n Simple_repeat Simple_repeat 2 67 0 5643 22 0 0 chr13 18122462 18123111 -83750058 - L1PA5 LINE L1 -20 6134 5486 215 177 16 0 chr13 18123403 18123465 -83749704 + (TA)n Simple_repeat Simple_repeat 2 64 0 360 294 65 74 chr13 18125153 18125384 -83747785 - L2 LINE L2 0 3272 3044 313 328 140 67 chr13 18125555 18126002 -83747167 - L2 LINE L2 -218 3054 2568 1720 167 3 42 chr13 18126818 18127129 -83746040 + AluJb SINE Alu 1 299 -13 2226 84 3 0 chr13 18127739 18128047 -83745122 - AluY SINE Alu -2 309 1 201 296 80 40 chr13 18128397 18128522 -83744647 + MIR SINE MIR 19 148 -114 21 0 0 0 chr13 18128862 18128883 -83744286 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 18130457 18130486 -83742683 + AT_rich Low_complexity Low_complexity 1 29 0 2360 91 0 0 chr13 18131204 18131513 -83741656 + AluY SINE Alu 1 309 -2 202 188 0 0 chr13 18132023 18132055 -83741114 + polypurine Low_complexity Low_complexity 2 33 0 474 264 31 0 chr13 18132319 18132448 -83740721 - MIR SINE MIR -44 218 86 216 86 0 0 chr13 18133610 18133645 -83739524 + (TA)n Simple_repeat Simple_repeat 1 35 0 3196 186 41 26 chr13 18133887 18134238 -83738931 - L1MB7 LINE L1 -10 6174 5830 2172 95 3 0 chr13 18134238 18134532 -83738637 - AluY SINE Alu -16 295 1 3196 186 41 26 chr13 18134532 18134884 -83738285 - L1MB7 LINE L1 -354 5830 5460 189 0 0 0 chr13 18135643 18135664 -83737505 + (CA)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr13 18137341 18137363 -83735806 + AT_rich Low_complexity Low_complexity 1 22 0 2670 119 27 19 chr13 18137392 18137803 -83735366 - MSTC LTR MaLR 0 428 15 215 305 222 39 chr13 18139163 18139808 -83733361 - L2 LINE L2 -509 2805 2043 1726 153 20 10 chr13 18139966 18140267 -83732902 + AluJb SINE Alu 1 304 -8 584 268 112 6 chr13 18141208 18141387 -83731782 + MIR SINE MIR 29 226 -36 196 290 58 29 chr13 18141423 18141492 -83731677 + L2 LINE L2 3180 3250 -63 22 0 0 0 chr13 18141720 18141742 -83731427 + AT_rich Low_complexity Low_complexity 1 22 0 292 314 123 83 chr13 18141883 18142087 -83731082 - L2 LINE L2 -4 3268 3057 1495 183 0 4 chr13 18143137 18143394 -83729775 - AluJo SINE Alu -56 256 1 2150 96 3 3 chr13 18143817 18144109 -83729060 + AluSg SINE Alu 1 292 -18 2609 211 39 10 chr13 18144779 18145376 -83727793 + MER90 LTR ERV1 1 614 0 2168 127 0 3 chr13 18145442 18145749 -83727420 + AluSx SINE Alu 1 306 -6 23 68 0 0 chr13 18145854 18145898 -83727271 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr13 18150271 18150299 -83722870 + AT_rich Low_complexity Low_complexity 1 28 0 531 0 0 0 chr13 18152923 18152982 -83720187 + (CTG)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr13 18156750 18156771 -83716398 + AT_rich Low_complexity Low_complexity 1 21 0 446 242 13 59 chr13 18159364 18159517 -83713652 - L1ME1 LINE L1 -7 6159 6014 369 0 0 0 chr13 18160861 18160902 -83712267 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 179 232 9 chr13 18163125 18163237 -83709932 - MIR SINE MIR -66 196 60 21 0 0 0 chr13 18163418 18163439 -83709730 + AT_rich Low_complexity Low_complexity 1 21 0 571 298 144 59 chr13 18164086 18164529 -83708640 - L3 LINE CR1 -14 1563 1083 204 291 114 25 chr13 18165405 18165484 -83707685 - L3 LINE CR1 -473 1104 1019 22 56 0 0 chr13 18165567 18165603 -83707566 + AT_rich Low_complexity Low_complexity 1 36 0 621 296 29 50 chr13 18167316 18167556 -83705613 - MIR SINE MIR -17 245 11 389 255 102 0 chr13 18167560 18167658 -83705511 + MIR SINE MIR 106 213 -49 207 279 59 15 chr13 18167690 18167758 -83705411 - MIR SINE MIR -164 98 28 994 258 151 6 chr13 18167936 18168281 -83704888 + L2 LINE L2 2209 2603 -711 218 302 149 66 chr13 18168336 18168683 -83704486 - L2 LINE L2 -1150 2164 1774 1930 98 39 3 chr13 18168683 18168969 -83704200 + L1PB1 LINE L1 5852 6147 -4 218 302 149 66 chr13 18168969 18169045 -83704124 - L2 LINE L2 -1540 1774 1706 223 392 0 0 chr13 18169652 18169749 -83703420 - L2 LINE L2 -2569 745 649 222 243 14 71 chr13 18170338 18170408 -83702761 + MIR3 SINE MIR 120 185 -23 27 29 0 0 chr13 18170507 18170541 -83702628 + AT_rich Low_complexity Low_complexity 1 34 0 37 90 0 0 chr13 18170571 18170671 -83702498 + AT_rich Low_complexity Low_complexity 1 100 0 223 316 71 10 chr13 18170803 18170901 -83702268 + L3 LINE CR1 69 172 -1405 1398 220 26 87 chr13 18171044 18171061 -83702108 + L1MEc LINE L1 2030 2046 -4169 567 76 13 0 chr13 18171061 18171140 -83702029 + MADE1 DNA Mariner 1 80 0 1398 220 26 87 chr13 18171140 18171362 -83701807 + L1MEc LINE L1 2046 2280 -3935 1647 195 23 3 chr13 18171362 18171664 -83701505 + AluJb SINE Alu 4 311 -1 1398 220 26 87 chr13 18171664 18172096 -83701073 + L1MEc LINE L1 2280 2652 -3563 316 214 0 0 chr13 18172113 18172169 -83701000 - Tigger5 DNA MER2_type 0 2323 2268 440 206 0 0 chr13 18172181 18172254 -83700915 - Tigger5 DNA MER2_type -2250 73 1 969 148 82 0 chr13 18172255 18172451 -83700718 + L1MEc LINE L1 2669 2880 -3335 301 272 82 90 chr13 18172464 18172743 -83700426 + L3 LINE CR1 1111 1387 -190 602 205 0 47 chr13 18172787 18172914 -83700255 - FLAM_A SINE Alu -12 121 1 1653 188 13 3 chr13 18172979 18173287 -83699882 + AluJo SINE Alu 1 311 -1 22 35 0 0 chr13 18174391 18174420 -83698749 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 18175322 18175352 -83697817 + AT_rich Low_complexity Low_complexity 1 30 0 203 248 137 43 chr13 18178603 18178720 -83694449 - L2 LINE L2 -4 3309 3182 390 217 0 12 chr13 18179264 18179347 -83693822 - MER63 DNA MER1_type -295 765 684 471 260 101 52 chr13 18179812 18180355 -83692814 - L1ME4a LINE L1 -2 6119 5550 253 259 37 104 chr13 18180802 18180937 -83692232 - Charlie8 DNA MER1_type -2291 126 1 1485 151 93 18 chr13 18181260 18181538 -83691631 - AluJo SINE Alu -13 299 1 30 0 0 0 chr13 18181663 18181693 -83691476 + AT_rich Low_complexity Low_complexity 1 30 0 1720 169 0 20 chr13 18182684 18182985 -83690184 - AluJo SINE Alu -7 305 11 211 243 135 40 chr13 18183347 18183421 -83689748 - MIR SINE MIR -105 103 23 319 313 99 0 chr13 18183445 18183576 -83689593 - L3 LINE CR1 -1 1576 1433 2233 230 93 47 chr13 18183624 18184367 -83688802 + L2 LINE L2 1801 2577 -737 257 368 152 6 chr13 18184417 18184588 -83688581 - L3 LINE CR1 -498 1079 884 483 305 28 7 chr13 18184665 18184806 -83688363 - MIR SINE MIR -90 172 29 523 327 101 53 chr13 18184900 18185499 -83687670 - L2 LINE L2 -453 2861 2187 3522 167 11 54 chr13 18185512 18186219 -83686950 + MER54B LTR ERVL 1 677 -116 376 297 95 39 chr13 18186287 18186519 -83686650 - L2 LINE L2 -1212 2102 1858 194 290 108 0 chr13 18186542 18186635 -83686534 - L3 LINE CR1 -731 846 744 243 206 59 15 chr13 18187247 18187315 -83685854 + GA-rich Low_complexity Low_complexity 3 73 0 399 267 102 75 chr13 18187316 18187503 -83685666 - MIR SINE MIR -13 249 58 21 82 0 0 chr13 18188356 18188405 -83684764 + AT_rich Low_complexity Low_complexity 1 49 0 2139 98 3 50 chr13 18189760 18190078 -83683091 - AluSx SINE Alu -9 303 1 29 47 0 0 chr13 18190216 18190259 -83682910 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr13 18190609 18190640 -83682529 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr13 18191192 18191241 -83681928 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 0 chr13 18192376 18192405 -83680764 + AT_rich Low_complexity Low_complexity 1 29 0 681 283 68 34 chr13 18193382 18193619 -83679550 - MIR SINE MIR -6 256 12 233 213 129 116 chr13 18194364 18194519 -83678650 + L2 LINE L2 3149 3305 -8 202 350 136 10 chr13 18194701 18194804 -83678365 - L2 LINE L2 -18 3254 3139 577 291 32 16 chr13 18194923 18195112 -83678057 - MIR SINE MIR -66 196 5 24 32 0 0 chr13 18196246 18196277 -83676892 + AT_rich Low_complexity Low_complexity 1 31 0 1795 130 57 3 chr13 18196279 18196595 -83676574 - L1MA4 LINE L1 -14 6286 5954 1296 148 84 15 chr13 18196599 18196859 -83676310 - MER1B DNA MER1_type 0 339 1 36 53 0 0 chr13 18197767 18197824 -83675345 + AT_rich Low_complexity Low_complexity 1 57 0 240 158 105 18 chr13 18198000 18198057 -83675112 - MLT1K LTR MaLR -5 583 522 2181 100 0 55 chr13 18198800 18199129 -83674040 + AluSx SINE Alu 1 311 -1 1815 140 3 17 chr13 18199229 18199522 -83673647 + MER1B DNA MER1_type 51 339 0 293 392 48 0 chr13 18199545 18199711 -83673458 - L2 LINE L2 -743 2571 2398 244 362 79 22 chr13 18199729 18199958 -83673211 - MIR SINE MIR -1 261 20 489 301 80 0 chr13 18199979 18200178 -83672991 - L2 LINE L2 -926 2388 2174 26 0 0 0 chr13 18201270 18201296 -83671873 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 18201837 18201867 -83671302 + AT_rich Low_complexity Low_complexity 1 30 0 2133 112 0 7 chr13 18201869 18202197 -83670972 + AluSx SINE Alu 1 312 0 329 314 18 71 chr13 18202243 18202266 -83670903 + MIR SINE MIR 28 51 -211 1291 205 144 28 chr13 18202266 18202593 -83670576 - MLT1A1 LTR MaLR 0 365 1 329 314 18 71 chr13 18202593 18202795 -83670374 + MIR SINE MIR 51 241 -21 1218 154 46 0 chr13 18202969 18203164 -83670005 + AluJb SINE Alu 6 209 -103 4615 186 264 47 chr13 18203166 18204519 -83668650 - MER52A LTR ERV1 -10 1745 1 607 163 0 0 chr13 18204519 18204611 -83668558 + AluSg/x SINE Alu 203 294 -15 634 216 76 22 chr13 18205634 18205819 -83667350 - MIR SINE MIR -1 261 67 24 0 0 0 chr13 18207036 18207060 -83666109 + AT_rich Low_complexity Low_complexity 1 24 0 314 136 227 0 chr13 18209317 18209383 -83663786 + MER69 DNA AcHobo 1 81 -2445 866 279 77 30 chr13 18209529 18209895 -83663274 - L1MC/D LINE L1 -2089 5719 5337 251 300 0 0 chr13 18210409 18210459 -83662710 - L2 LINE L2 -18 3254 3205 22 0 0 0 chr13 18210578 18210600 -83662569 + AT_rich Low_complexity Low_complexity 1 22 0 265 299 46 0 chr13 18211231 18211318 -83661851 - MIR SINE MIR -49 213 123 413 277 27 0 chr13 18211330 18211442 -83661727 + L2 LINE L2 3158 3272 0 228 35 0 0 chr13 18211901 18211930 -83661239 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 374 264 40 69 chr13 18212169 18212343 -83660826 - MIR SINE MIR -12 250 82 402 96 27 14 chr13 18213031 18213104 -83660065 - L1MC2 LINE L1 -13 6331 6258 335 78 20 0 chr13 18213236 18213287 -83659882 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 557 291 108 55 chr13 18213981 18214418 -83658751 - L2 LINE L2 0 3313 2854 3559 115 24 4 chr13 18214708 18215247 -83657922 - Tigger4(Zombi) DNA MER2_type 0 2731 2182 954 208 0 0 chr13 18215266 18215434 -83657735 - Tigger4(Zombi) DNA MER2_type -2559 172 5 371 339 78 0 chr13 18215699 18215814 -83657355 - L2 LINE L2 -32 3240 3117 2704 26 0 0 chr13 18216234 18216542 -83656627 + AluY SINE Alu 1 308 -3 183 318 136 23 chr13 18217273 18217449 -83655720 - L2 LINE L2 -5 3308 3113 220 350 38 0 chr13 18217890 18217970 -83655199 + L2 LINE L2 3172 3254 -59 381 58 0 0 chr13 18218325 18218377 -83654792 + (TG)n Simple_repeat Simple_repeat 2 53 0 732 205 19 68 chr13 18218417 18218622 -83654547 - MIR SINE MIR -8 254 60 2852 219 68 24 chr13 18219237 18220169 -83653000 - Charlie2 DNA MER1_type -35 2827 1855 21 0 0 0 chr13 18220259 18220280 -83652889 + AT_rich Low_complexity Low_complexity 1 21 0 390 308 33 55 chr13 18222642 18222824 -83650345 - L2 LINE L2 -4 3309 3132 1501 169 4 0 chr13 18222839 18223076 -83650093 + AluSx SINE Alu 58 295 -17 27 0 0 26 chr13 18223140 18223155 -83650014 + AT_rich Low_complexity Low_complexity 1 15 -22 2312 94 0 7 chr13 18223155 18223452 -83649717 - AluSg SINE Alu -15 295 1 27 0 0 26 chr13 18223452 18223474 -83649695 + AT_rich Low_complexity Low_complexity 15 37 0 186 43 0 0 chr13 18223580 18223603 -83649566 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 432 273 44 54 chr13 18223708 18223913 -83649256 + MARNA DNA Mariner 19 221 -365 337 185 0 158 chr13 18224066 18224205 -83648964 - LTR41 LTR ERVL -8 765 648 2216 121 0 3 chr13 18224205 18224503 -83648666 + AluSx SINE Alu 1 297 -15 919 224 133 8 chr13 18224590 18224853 -83648316 - LTR41 LTR ERVL -477 296 1 288 276 81 65 chr13 18225595 18225718 -83647451 - MIR SINE MIR -108 154 30 257 288 50 12 chr13 18226194 18226274 -83646895 - MLT1J LTR MaLR -193 318 236 1134 195 23 9 chr13 18226434 18226655 -83646514 + MER58A DNA MER1_type 1 224 0 668 293 88 11 chr13 18228198 18228714 -83644455 - MLT1L LTR MaLR -2 613 1 253 376 51 17 chr13 18228779 18228896 -83644273 + L2 LINE L2 3136 3256 -16 549 338 129 34 chr13 18229082 18229431 -83643738 - L3 LINE CR1 -1192 385 4 1966 153 0 3 chr13 18229489 18229789 -83643380 - AluJb SINE Alu -13 299 1 226 208 0 0 chr13 18230068 18230116 -83643053 + L2 LINE L2 3266 3313 0 2644 205 41 21 chr13 18230328 18230895 -83642274 + MER119 DNA MER1_type 6 583 0 180 77 0 0 chr13 18231212 18231238 -83641931 + (CCTA)n Simple_repeat Simple_repeat 1 26 0 273 268 0 14 chr13 18232691 18232762 -83640407 + (CATA)n Simple_repeat Simple_repeat 2 71 0 258 405 63 0 chr13 18234720 18234831 -83638338 - L2 LINE L2 -21 3251 3134 272 337 79 0 chr13 18234965 18235066 -83638103 - L2 LINE L2 -211 3061 2953 598 239 138 6 chr13 18235183 18235350 -83637819 + MER5A DNA MER1_type 1 189 0 2389 41 0 50 chr13 18236231 18236551 -83636618 + AluY SINE Alu 1 304 -7 1166 248 35 4 chr13 18236590 18236844 -83636325 - MIR SINE MIR 0 262 1 1178 276 45 11 chr13 18237099 18237451 -83635718 - LTR16A LTR ERVL -20 430 67 700 243 50 6 chr13 18237478 18237659 -83635510 - MER5A DNA MER1_type 0 189 1 343 250 95 7 chr13 18238501 18238649 -83634520 - L1ME4a LINE L1 -1 6120 5960 299 290 11 0 chr13 18238698 18238791 -83634378 - L1ME4a LINE L1 -266 5855 5762 405 0 0 0 chr13 18239730 18239775 -83633394 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 31 44 0 0 chr13 18240207 18240252 -83632917 + AT_rich Low_complexity Low_complexity 1 45 0 1216 112 0 6 chr13 18240474 18240652 -83632517 - L1PA15 LINE L1 -3 6162 5986 213 242 144 45 chr13 18241511 18241643 -83631526 - L2 LINE L2 0 3313 3169 21 0 0 0 chr13 18242217 18242238 -83630931 + AT_rich Low_complexity Low_complexity 1 21 0 2161 89 0 0 chr13 18242678 18242989 -83630180 + AluSg SINE Alu 1 311 0 430 280 129 0 chr13 18243112 18243298 -83629871 - MLT1J1 LTR MaLR -236 210 1 475 306 107 19 chr13 18244523 18244739 -83628430 + MIR SINE MIR 28 262 0 1202 151 36 36 chr13 18245222 18245447 -83627722 - MER46A DNA MER2_type 0 236 12 821 248 51 23 chr13 18245450 18245664 -83627505 + MIR SINE MIR 16 235 -27 354 294 25 34 chr13 18246170 18246289 -83626880 - L2 LINE L2 -5 3267 3150 2174 88 0 7 chr13 18246608 18246931 -83626238 - AluSg SINE Alu 0 321 1 21 0 0 0 chr13 18247814 18247835 -83625334 + AT_rich Low_complexity Low_complexity 1 21 0 310 253 0 0 chr13 18247881 18247956 -83625213 - MLT1L LTR MaLR 0 615 541 410 347 57 0 chr13 18248024 18248200 -83624969 + MIR SINE MIR 65 250 -12 26 30 0 0 chr13 18248333 18248366 -83624803 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 18248474 18248497 -83624672 + AT_rich Low_complexity Low_complexity 1 23 0 477 121 0 0 chr13 18249311 18249416 -83623753 - AluSg/x SINE Alu 0 317 213 290 265 176 0 chr13 18249854 18249956 -83623213 - L2 LINE L2 0 3272 3153 395 260 31 0 chr13 18250713 18250809 -83622360 - MIR SINE MIR 0 262 164 291 161 0 0 chr13 18250978 18251034 -83622135 + A-rich Low_complexity Low_complexity 1 56 0 888 143 0 0 chr13 18251201 18251327 -83621842 + FLAM_C SINE Alu 1 126 -17 1926 101 58 0 chr13 18251355 18251631 -83621538 - AluSq SINE Alu -15 298 7 312 280 104 76 chr13 18252181 18252538 -83620631 - L1MC4 LINE L1 -145 7897 7531 1918 146 3 16 chr13 18252698 18253014 -83620155 - AluSx SINE Alu 0 312 1 1054 301 150 7 chr13 18253510 18253949 -83619220 - MLT1K LTR MaLR -16 572 71 233 261 0 34 chr13 18254017 18254136 -83619033 - L1M LINE L1 -786 5392 5278 25 0 0 0 chr13 18254237 18254262 -83618907 + AT_rich Low_complexity Low_complexity 1 25 0 231 300 89 0 chr13 18254275 18254365 -83618804 - L2 LINE L2 -1 3312 3215 213 293 182 0 chr13 18254812 18254911 -83618258 + MIR3 SINE MIR 70 186 -22 714 178 0 16 chr13 18254971 18255100 -83618069 + FLAM_C SINE Alu 1 127 -16 1508 167 79 24 chr13 18255343 18255684 -83617485 - MER46B DNA MER2_type 0 236 2 21 0 0 0 chr13 18256249 18256270 -83616899 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 18256972 18256993 -83616176 + AT_rich Low_complexity Low_complexity 1 21 0 3415 24 0 1 chr13 18257707 18258144 -83615025 - L1P1 LINE L1 -490 5665 5230 2851 43 0 0 chr13 18258146 18258517 -83614652 + L1PA2 LINE L1 5808 6178 0 2218 78 0 0 chr13 18258602 18258919 -83614250 + AluY SINE Alu 1 317 0 23 33 0 0 chr13 18259540 18259570 -83613599 + AT_rich Low_complexity Low_complexity 1 30 0 1350 186 16 51 chr13 18260912 18261085 -83612084 - AluJo SINE Alu -11 301 142 2386 99 0 0 chr13 18261085 18261397 -83611772 - AluSx SINE Alu 0 312 1 1350 186 16 51 chr13 18261397 18261535 -83611634 - AluJo SINE Alu -170 142 1 568 328 164 42 chr13 18261686 18262608 -83610561 + L2 LINE L2 1653 2686 -628 1574 153 15 37 chr13 18264480 18264806 -83608363 - MER33 DNA MER1_type 0 324 6 25 0 0 0 chr13 18265148 18265173 -83607996 + AT_rich Low_complexity Low_complexity 1 25 0 227 258 164 47 chr13 18265890 18266018 -83607151 + MIR SINE MIR 114 256 -6 261 265 214 0 chr13 18267504 18267602 -83605567 - L2 LINE L2 -8 3264 3146 265 217 103 143 chr13 18267656 18267859 -83605310 - MIR SINE MIR -28 234 40 585 309 125 57 chr13 18268880 18269402 -83603767 - L2 LINE L2 0 3272 2719 185 246 175 0 chr13 18269675 18269732 -83603437 - MIR SINE MIR -57 151 85 396 0 0 0 chr13 18271544 18271588 -83601581 + (CA)n Simple_repeat Simple_repeat 1 44 0 658 292 114 17 chr13 18272061 18272607 -83600562 - L1MC4a LINE L1 -369 5796 5272 372 94 0 0 chr13 18272675 18272728 -83600441 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 18273218 18273240 -83599929 + AT_rich Low_complexity Low_complexity 1 22 0 307 256 139 22 chr13 18274171 18274308 -83598861 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 18274333 18274563 -83598606 - MLT1H LTR MaLR -308 241 1 307 256 139 22 chr13 18275153 18275290 -83597879 - MIR SINE MIR -77 185 33 716 261 61 13 chr13 18275315 18275545 -83597624 - MLT1H LTR MaLR -308 241 1 263 258 155 97 chr13 18275561 18275871 -83597298 - MLT1H-int LTR MaLR -18 1353 1026 271 309 75 60 chr13 18276497 18276749 -83596420 - MLT1H-int LTR MaLR -827 544 289 560 253 119 80 chr13 18276855 18277368 -83595801 - MLT1H LTR MaLR 0 549 17 2124 160 30 26 chr13 18277535 18277961 -83595208 - LTR23 LTR ERV1 0 437 10 371 272 114 19 chr13 18278183 18278341 -83594828 - MIR SINE MIR -54 208 36 1975 158 0 0 chr13 18278472 18278776 -83594393 + AluSx SINE Alu 1 304 -8 304 264 224 17 chr13 18278861 18279035 -83594134 - L2 LINE L2 0 3313 3104 2333 119 0 0 chr13 18279059 18279369 -83593800 + AluSg SINE Alu 1 310 0 781 299 27 14 chr13 18279400 18279647 -83593522 + MIR SINE MIR 3 252 -10 192 346 0 0 chr13 18280828 18280880 -83592289 - L2 LINE L2 -16 3256 3205 204 337 139 43 chr13 18282267 18282635 -83590534 + L2 LINE L2 2831 3233 -39 1077 193 0 33 chr13 18284626 18284838 -83588331 - AluJo SINE Alu -12 300 96 253 321 12 0 chr13 18284993 18285077 -83588092 - L2 LINE L2 0 3313 3229 10048 104 72 32 chr13 18285155 18286218 -83586951 - MER4-int LTR ERV1 -961 5637 4618 2428 79 13 0 chr13 18286218 18286523 -83586646 - AluY SINE Alu 0 311 3 10048 104 72 32 chr13 18286523 18287347 -83585822 - MER4-int LTR ERV1 -1980 4618 3082 4309 148 17 38 chr13 18287473 18287798 -83585371 + L1MB2 LINE L1 5417 5747 -424 2447 87 0 0 chr13 18287798 18288098 -83585071 + AluSg SINE Alu 1 300 -10 4309 148 17 38 chr13 18288098 18288538 -83584631 + L1MB2 LINE L1 5747 6166 -5 264 212 15 0 chr13 18288555 18288621 -83584548 - LTR33 LTR ERVL -53 468 402 365 256 191 35 chr13 18288657 18288856 -83584313 - LTR33 LTR ERVL -233 288 59 2242 112 0 0 chr13 18289389 18289692 -83583477 + AluSc SINE Alu 3 305 -4 3546 202 58 11 chr13 18289985 18290080 -83583089 - L1M4 LINE L1 -639 5545 5456 1406 163 104 31 chr13 18290080 18290369 -83582800 - AluJo SINE Alu -2 310 1 3546 202 58 11 chr13 18290369 18291213 -83581956 - L1M4 LINE L1 -728 5456 4576 1454 208 31 0 chr13 18291213 18291506 -83581663 + MER58B DNA MER1_type 40 341 0 221 260 240 10 chr13 18291770 18291870 -83581299 - MIR3 SINE MIR -5 203 81 2497 87 32 9 chr13 18291955 18292471 -83580698 + MER51A LTR ERV1 1 604 -30 236 302 181 17 chr13 18292645 18292761 -83580408 - MIR SINE MIR -121 141 7 1156 154 0 75 chr13 18294014 18294241 -83578928 + AluJb SINE Alu 100 309 -3 1779 206 74 66 chr13 18294265 18295194 -83577975 + L1MD1 LINE L1 4906 5845 -397 3578 194 69 20 chr13 18295236 18295936 -83577233 - L1MB7 LINE L1 -9 6175 5432 2535 36 0 26 chr13 18295936 18296245 -83576924 - AluY SINE Alu -10 301 1 3578 194 69 20 chr13 18296245 18296309 -83576860 - L1MB7 LINE L1 -752 5432 5373 5412 145 36 30 chr13 18296739 18297423 -83575746 - L1MA7 LINE L1 0 6291 5612 279 0 0 0 chr13 18297423 18297454 -83575715 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1561 157 84 0 chr13 18297454 18297715 -83575454 - AluJb SINE Alu -29 283 1 5412 145 36 30 chr13 18297715 18298047 -83575122 - L1MA7 LINE L1 -678 5613 5268 205 294 29 0 chr13 18298779 18298847 -83574322 - MIR SINE MIR -18 244 175 1287 143 55 73 chr13 18298850 18299123 -83574046 + AluJb SINE Alu 35 302 -10 2282 93 0 3 chr13 18299169 18299460 -83573709 - AluSx SINE Alu -22 290 1 196 239 65 0 chr13 18299906 18299952 -83573217 - MIR SINE MIR -58 150 102 22 0 0 0 chr13 18302230 18302252 -83570917 + AT_rich Low_complexity Low_complexity 1 22 0 923 148 19 13 chr13 18303075 18303230 -83569939 - LTR32 LTR ERVL 0 471 316 1832 170 9 32 chr13 18303235 18303576 -83569593 - LTR32 LTR ERVL -125 346 14 204 315 0 0 chr13 18303645 18303699 -83569470 - L2 LINE L2 0 3272 3219 269 329 88 7 chr13 18303758 18303895 -83569274 - L2 LINE L2 -1 3312 3165 1493 264 105 16 chr13 18303968 18304628 -83568541 - L2 LINE L2 -89 3224 2513 248 355 127 0 chr13 18304864 18304974 -83568195 + L2 LINE L2 3128 3251 -21 437 214 127 0 chr13 18305008 18305134 -83568035 + L2 LINE L2 3172 3313 0 * 1048 254 47 33 chr13 18305133 18305495 -83567674 + L2 LINE L2 2947 3313 0 271 333 42 8 chr13 18305592 18305712 -83567457 - L2 LINE L2 -13 3300 3177 34 55 0 0 chr13 18307340 18307395 -83565774 + AT_rich Low_complexity Low_complexity 1 55 0 237 281 100 43 chr13 18307464 18307833 -83565336 + L1MB8 LINE L1 3338 3754 -2392 357 93 0 0 chr13 18307843 18307897 -83565272 + (TG)n Simple_repeat Simple_repeat 1 54 0 232 274 63 11 chr13 18307927 18308022 -83565147 + L1MB8 LINE L1 4063 4162 -1984 255 318 88 30 chr13 18308131 18308436 -83564733 + L1MB8 LINE L1 4385 4707 -1439 237 273 0 0 chr13 18308689 18308755 -83564414 - L1M4 LINE L1 -1910 4236 4171 298 247 97 69 chr13 18308785 18309151 -83564018 + L1MB8 LINE L1 4885 5282 -879 1830 159 0 26 chr13 18309151 18309460 -83563709 + AluJb SINE Alu 1 301 -11 298 247 97 69 chr13 18309460 18309596 -83563573 + L1MB8 LINE L1 5282 5413 -748 947 224 33 42 chr13 18309728 18310063 -83563106 + L1MB8 LINE L1 5846 6177 -1 1827 214 44 11 chr13 18310076 18310511 -83562658 - L1MC4a LINE L1 -422 7386 6938 192 376 0 0 chr13 18310528 18310613 -83562556 - L2 LINE L2 0 3272 3188 2074 112 0 11 chr13 18311704 18312022 -83561147 + AluSx SINE Alu 1 315 0 1922 138 0 21 chr13 18313056 18313377 -83559792 - AluSx SINE Alu 0 315 1 1225 255 28 28 chr13 18313707 18313845 -83559324 + LTR16A LTR ERVL 68 205 -245 2927 81 3 18 chr13 18313845 18314226 -83558943 + THE1C LTR MaLR 1 375 0 1225 255 28 28 chr13 18314226 18314448 -83558721 + LTR16A LTR ERVL 204 428 -22 983 197 22 0 chr13 18314456 18314639 -83558530 + MER53 DNA DNA 3 189 0 466 230 0 0 chr13 18315922 18316022 -83557147 - L1MB7 LINE L1 -8 6176 6077 427 194 0 0 chr13 18316193 18316265 -83556904 + Tigger7 DNA MER2_type 273 344 -2143 * 961 129 14 7 chr13 18316260 18316407 -83556762 + Tigger7 DNA MER2_type 2439 2586 -1 2086 148 0 0 chr13 18316431 18316736 -83556433 - AluSx SINE Alu -7 305 1 275 270 56 0 chr13 18316756 18316845 -83556324 - MLT1J LTR MaLR -416 95 2 306 282 115 70 chr13 18316879 18317209 -83555960 - MLT2C1 LTR ERVL 0 397 53 * 542 241 57 19 chr13 18317083 18317241 -83555928 - MLT1E3 LTR MaLR -420 204 41 * 579 224 52 15 chr13 18317238 18317372 -83555797 - MLT2F LTR ERVL -524 139 1 203 344 58 45 chr13 18318237 18318391 -83554778 + L2 LINE L2 3113 3268 -4 240 174 0 0 chr13 18318704 18318750 -83554419 + L2 LINE L2 3226 3271 -1 397 223 19 167 chr13 18318881 18319096 -83554073 - MIR SINE MIR -14 248 66 2249 213 63 29 chr13 18319314 18319738 -83553431 + L1ME1 LINE L1 5590 6039 -127 788 192 0 0 chr13 18319738 18319868 -83553301 - FLAM_C SINE Alu -3 130 1 2249 213 63 29 chr13 18319868 18319996 -83553173 + L1ME1 LINE L1 6039 6161 -5 347 269 67 17 chr13 18321498 18321617 -83551552 + MIR SINE MIR 84 208 -54 194 324 28 0 chr13 18321662 18321733 -83551436 + MIR SINE MIR 21 93 -115 363 167 0 64 chr13 18323337 18323415 -83549754 + ORSL DNA AcHobo 1 73 -202 461 164 82 74 chr13 18323417 18323542 -83549627 - L1PB4 LINE L1 -6 6150 6023 1322 115 0 0 chr13 18323646 18323829 -83549340 - AluSg/x SINE Alu -5 305 123 180 0 0 0 chr13 18326299 18326319 -83546850 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 276 193 0 18 chr13 18326547 18326604 -83546565 + L2 LINE L2 3255 3310 -3 198 0 0 0 chr13 18326641 18326663 -83546506 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 693 171 34 0 chr13 18327996 18328113 -83545056 + FLAM_A SINE Alu 11 131 -11 258 81 0 0 chr13 18328859 18328896 -83544273 + (TG)n Simple_repeat Simple_repeat 2 38 0 555 329 24 24 chr13 18331144 18331357 -83541812 - MIR SINE MIR -4 258 46 782 146 7 36 chr13 18331505 18331709 -83541460 + FLAM_C SINE Alu 1 200 0 1552 218 106 12 chr13 18332747 18333321 -83539848 - Charlie2 DNA MER1_type -11 2851 2224 26 30 0 0 chr13 18333648 18333681 -83539488 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr13 18334607 18334642 -83538527 + AT_rich Low_complexity Low_complexity 1 35 0 1838 154 3 3 chr13 18335258 18335544 -83537625 + AluJb SINE Alu 4 289 -23 204 115 16 33 chr13 18336651 18336712 -83536457 + (TAAAA)n Simple_repeat Simple_repeat 3 62 0 29 28 0 0 chr13 18336994 18337030 -83536139 + AT_rich Low_complexity Low_complexity 1 36 0 196 328 0 0 chr13 18337716 18337777 -83535392 + MIR SINE MIR 79 139 -123 207 0 0 0 chr13 18338258 18338281 -83534888 + (A)n Simple_repeat Simple_repeat 1 23 0 411 202 43 0 chr13 18338927 18339021 -83534148 + MER5A DNA MER1_type 4 101 -88 352 158 0 0 chr13 18339128 18339185 -83533984 - L1MC5 LINE L1 -63 7898 7842 425 125 0 0 chr13 18339287 18339351 -83533818 + AluSg SINE Alu 27 90 -220 317 342 8 8 chr13 18339422 18339539 -83533630 + MIR SINE MIR 54 170 -92 2273 80 11 0 chr13 18339908 18340194 -83532975 + AluY SINE Alu 1 289 -22 203 211 0 35 chr13 18342435 18342492 -83530677 + CT-rich Low_complexity Low_complexity 3 57 0 4478 152 25 32 chr13 18343005 18343387 -83529782 + L1MB2 LINE L1 5349 5732 -439 2426 87 0 0 chr13 18343387 18343687 -83529482 + AluSg SINE Alu 1 300 -10 4478 152 25 32 chr13 18343687 18344127 -83529042 + L1MB2 LINE L1 5732 6166 -5 260 236 14 0 chr13 18344144 18344216 -83528953 - LTR33 LTR ERVL -53 468 396 378 274 194 30 chr13 18344246 18344447 -83528722 - LTR33 LTR ERVL -233 288 55 27 29 0 0 chr13 18345078 18345112 -83528057 + AT_rich Low_complexity Low_complexity 1 34 0 260 381 24 0 chr13 18346271 18346355 -83526814 - MER91A DNA MER1_type -110 86 1 24 0 0 0 chr13 18346926 18346950 -83526219 + AT_rich Low_complexity Low_complexity 1 24 0 1453 223 63 12 chr13 18347095 18347526 -83525643 + L1ME3 LINE L1 5561 6013 -149 277 146 0 0 chr13 18347565 18347613 -83525556 - L1ME3 LINE L1 -74 6088 6041 * 326 230 0 103 chr13 18347605 18347731 -83525438 + L1ME3 LINE L1 6020 6132 -30 589 234 24 18 chr13 18348071 18348238 -83524931 + MER104 DNA Tc2 7 174 -6 333 294 150 19 chr13 18348524 18348684 -83524485 - Charlie8 DNA MER1_type -2233 184 4 459 283 17 17 chr13 18348690 18348810 -83524359 + L2 LINE L2 3194 3313 0 199 222 0 0 chr13 18349243 18349279 -83523890 + MIR SINE MIR 222 257 -5 212 259 0 0 chr13 18350321 18350375 -83522794 - L2 LINE L2 -4 3309 3256 821 243 99 0 chr13 18352649 18352871 -83520298 + MIR SINE MIR 8 251 -11 377 244 13 13 chr13 18353281 18353359 -83519810 - L2 LINE L2 -6 3266 3189 2252 104 7 0 chr13 18353413 18353710 -83519459 - AluSg SINE Alu -11 299 1 1558 178 51 7 chr13 18353730 18354006 -83519163 - AluJo SINE Alu -21 291 4 243 0 0 0 chr13 18354026 18354053 -83519116 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr13 18354329 18354356 -83518813 + AT_rich Low_complexity Low_complexity 1 27 0 1435 104 22 5 chr13 18354656 18354878 -83518291 + L1PA10 LINE L1 5943 6168 0 258 274 11 53 chr13 18355839 18355934 -83517235 + L2 LINE L2 3215 3305 -8 391 318 48 8 chr13 18356092 18356218 -83516951 - L2 LINE L2 -4 3309 3179 1672 103 0 0 chr13 18356336 18356559 -83516610 + AluSg/x SINE Alu 72 294 -18 433 274 52 19 chr13 18357251 18357463 -83515706 - L1MCc LINE L1 -6180 243 25 394 59 0 0 chr13 18358049 18358100 -83515069 + L1PA6 LINE L1 6002 6052 -102 2457 45 0 0 chr13 18358200 18358491 -83514678 - AluY SINE Alu -20 291 1 2205 125 0 0 chr13 18358823 18359128 -83514041 - AluSx SINE Alu -7 305 1 26 50 0 0 chr13 18360962 18361002 -83512167 + AT_rich Low_complexity Low_complexity 1 40 0 208 325 113 12 chr13 18361677 18361757 -83511412 - L2 LINE L2 0 3272 3185 21 57 0 0 chr13 18363424 18363459 -83509710 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 18363551 18363581 -83509588 + AT_rich Low_complexity Low_complexity 1 30 0 238 318 118 0 chr13 18363964 18364049 -83509120 - L2 LINE L2 -22 3291 3197 197 243 135 0 chr13 18366407 18366481 -83506688 + MIR SINE MIR 151 234 -28 21 0 0 0 chr13 18368164 18368185 -83504984 + AT_rich Low_complexity Low_complexity 1 21 0 3368 135 49 22 chr13 18368487 18369116 -83504053 - L1MA4 LINE L1 -6 6294 5649 25 0 0 0 chr13 18369215 18369240 -83503929 + AT_rich Low_complexity Low_complexity 1 25 0 399 271 83 44 chr13 18370117 18370298 -83502871 + MIR SINE MIR 49 236 -26 438 248 66 15 chr13 18370337 18370474 -83502695 - MIR SINE MIR -45 217 74 2038 127 0 3 chr13 18371078 18371377 -83501792 - AluSq SINE Alu -15 298 1 204 345 0 0 chr13 18371411 18371466 -83501703 + MIR SINE MIR 35 89 -119 200 267 13 27 chr13 18371459 18371534 -83501635 - L2 LINE L2 -330 2942 2869 * 195 100 0 0 chr13 18373763 18373793 -83499376 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 220 327 0 20 chr13 18374070 18374171 -83498998 + GA-rich Low_complexity Low_complexity 2 100 0 23 0 0 0 chr13 18374837 18374860 -83498309 + AT_rich Low_complexity Low_complexity 1 23 0 276 207 179 28 chr13 18375457 18375602 -83497567 + Charlie7 DNA MER1_type 2429 2595 -17 203 273 26 65 chr13 18379166 18379243 -83493926 - MER5A DNA MER1_type -1 188 115 2124 112 3 20 chr13 18379611 18379915 -83493254 - AluSx SINE Alu -13 299 1 454 318 48 63 chr13 18381463 18381715 -83491454 + MLT1K LTR MaLR 156 403 -185 249 281 30 52 chr13 18381985 18382120 -83491049 + L1ME3A LINE L1 5596 5727 -435 678 212 46 79 chr13 18382136 18382377 -83490792 + L1ME3A LINE L1 5931 6163 -7 1536 168 84 4 chr13 18382652 18382926 -83490243 - MLT1A1 LTR MaLR 0 365 70 350 315 0 0 chr13 18382936 18383047 -83490122 + MIR SINE MIR 32 142 -66 2219 127 10 0 chr13 18383412 18383720 -83489449 - AluSx SINE Alu -1 311 1 1544 107 17 34 chr13 18383768 18384002 -83489167 - MER30 DNA MER1_type 0 230 1 211 252 26 61 chr13 18384279 18384394 -83488775 - MIR3 SINE MIR -32 176 66 485 201 35 6 chr13 18384937 18385106 -83488063 + (CATA)n Simple_repeat Simple_repeat 3 176 0 188 196 0 36 chr13 18385141 18385197 -83487972 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 1057 234 145 37 chr13 18385197 18385507 -83487662 - MLT2B1 LTR ERVL -40 480 110 1885 142 3 28 chr13 18385507 18385795 -83487374 - AluSx SINE Alu -30 282 2 1057 234 145 37 chr13 18385795 18385912 -83487257 - MLT2B1 LTR ERVL -410 110 7 2340 119 0 0 chr13 18386999 18387353 -83485816 + AluSx SINE Alu 1 354 0 294 196 0 0 chr13 18387656 18387707 -83485462 + Tigger5 DNA MER2_type 1 51 -2272 363 216 34 11 chr13 18387714 18387802 -83485367 + Tigger5 DNA MER2_type 2234 2323 0 1880 98 0 16 chr13 18388129 18388375 -83484794 + AluSx SINE Alu 12 253 -59 412 241 48 54 chr13 18388402 18388568 -83484601 - MIR SINE MIR -16 246 82 2142 113 0 30 chr13 18388899 18389200 -83483969 - AluSx SINE Alu -20 292 1 226 349 0 0 chr13 18389318 18389404 -83483765 - L2 LINE L2 0 3313 3228 2611 135 114 27 chr13 18390625 18391085 -83482084 - LTR12 LTR ERV1 -227 487 1 1533 168 25 7 chr13 18391085 18391359 -83481810 - AluJo SINE Alu -33 279 1 1992 112 3 26 chr13 18391372 18391677 -83481492 - AluY SINE Alu -13 298 1 1930 136 0 50 chr13 18392124 18392447 -83480722 - AluJb SINE Alu -5 307 1 278 239 28 0 chr13 18393221 18393292 -83479877 + L1MEd LINE L1 6 78 -6041 458 325 116 56 chr13 18393507 18393990 -83479179 + L1MEd LINE L1 329 840 -5279 3101 167 70 27 chr13 18394036 18394623 -83478546 - LTR9 LTR ERV1 0 612 1 240 278 8 23 chr13 18394636 18394769 -83478400 + A-rich Low_complexity Low_complexity 4 134 0 2016 144 36 41 chr13 18395002 18395511 -83477658 + MLT2A2 LTR ERVL 1 416 -37 1899 116 90 0 chr13 18395512 18395789 -83477380 + AluSg SINE Alu 1 302 -8 1360 273 37 8 chr13 18395890 18396268 -83476901 - L1M1 LINE L1 -7046 519 131 2139 129 0 16 chr13 18396274 18396591 -83476578 - AluSx SINE Alu 0 312 1 690 212 20 85 chr13 18396655 18396854 -83476315 - MLT1B LTR MaLR -186 188 3 1603 184 25 69 chr13 18398297 18398705 -83474464 + MLT1B LTR MaLR 1 390 0 1342 199 108 72 chr13 18398935 18399378 -83473791 + MLT1C LTR MaLR 1 459 -8 232 175 0 0 chr13 18399773 18399813 -83473356 + MLT1B LTR MaLR 347 386 -4 198 240 0 40 chr13 18400223 18400273 -83472896 + L2 LINE L2 3225 3272 0 430 241 209 37 chr13 18400316 18400767 -83472402 - MLT1F LTR MaLR -5 588 4 2066 110 39 0 chr13 18401068 18401350 -83471819 - AluSx SINE Alu -19 293 1 1573 174 3 38 chr13 18402876 18403192 -83469977 + AluJo SINE Alu 1 305 -7 693 173 0 8 chr13 18406149 18406276 -83466893 + FLAM_C SINE Alu 3 128 -5 2122 135 3 3 chr13 18406287 18406599 -83466570 + AluSx SINE Alu 1 312 0 1136 214 158 15 chr13 18406908 18407315 -83465854 + MLT2B1 LTR ERVL 1 464 0 980 196 25 15 chr13 18407476 18407675 -83465494 + MLT1D LTR MaLR 8 208 -297 2218 176 41 77 chr13 18407688 18408309 -83464860 + L1M4 LINE L1 4996 5582 -602 309 51 0 0 chr13 18408309 18408348 -83464821 + (TG)n Simple_repeat Simple_repeat 1 39 0 2218 176 41 77 chr13 18408348 18408544 -83464625 + L1M4 LINE L1 5582 5784 -400 1368 111 0 16 chr13 18408605 18408794 -83464375 - AluSg/x SINE Alu -13 299 114 563 218 0 6 chr13 18408946 18409120 -83464049 + (CA)n Simple_repeat Simple_repeat 2 174 0 564 191 17 12 chr13 18409143 18409316 -83463853 + (CATA)n Simple_repeat Simple_repeat 1 174 0 563 226 3 0 chr13 18409321 18409648 -83463521 + (CA)n Simple_repeat Simple_repeat 1 328 0 378 222 0 17 chr13 18409681 18409857 -83463312 + (CA)n Simple_repeat Simple_repeat 1 173 0 420 258 0 0 chr13 18409876 18410054 -83463115 + (CA)n Simple_repeat Simple_repeat 2 179 0 612 228 0 7 chr13 18410074 18410378 -83462791 + (CA)n Simple_repeat Simple_repeat 1 302 0 560 215 12 0 chr13 18410383 18410555 -83462614 + (CATA)n Simple_repeat Simple_repeat 4 177 0 516 240 0 0 chr13 18410597 18410776 -83462393 + (CA)n Simple_repeat Simple_repeat 2 180 0 252 0 0 0 chr13 18412031 18412059 -83461110 + (A)n Simple_repeat Simple_repeat 1 28 0 340 280 77 7 chr13 18412852 18412995 -83460174 + L2 LINE L2 2926 3078 -194 720 142 59 16 chr13 18413681 18413934 -83459235 + CT-rich Low_complexity Low_complexity 1 264 0 202 128 64 0 chr13 18413946 18413993 -83459176 + CT-rich Low_complexity Low_complexity 2 51 0 293 299 0 19 chr13 18414744 18414851 -83458318 + 7SK RNA RNA 1 105 -88 734 93 107 0 chr13 18417902 18418042 -83455127 - MER41B LTR ERV1 -480 155 1 2178 162 58 75 chr13 18418042 18418574 -83454595 + MER34C LTR ERV1 63 585 0 1456 203 110 42 chr13 18418685 18419138 -83454031 - LTR29 LTR ERV1 -2 620 137 300 289 0 0 chr13 18419143 18419219 -83453950 - MER34 LTR ERV1 -446 96 21 1305 193 26 30 chr13 18419376 18419551 -83453618 + MER49 LTR ERV1 25 200 -723 4300 78 9 2 chr13 18419551 18420101 -83453068 - MER41A LTR ERV1 0 554 1 1305 193 26 30 chr13 18420101 18420195 -83452974 + MER49 LTR ERV1 200 293 -630 1601 200 31 31 chr13 18420231 18420586 -83452583 + MER4D LTR ERV1 549 903 0 2014 183 17 32 chr13 18420860 18421163 -83452006 - L1MB7 LINE L1 0 7603 7308 3638 151 48 5 chr13 18421163 18421772 -83451397 - MER41B LTR ERV1 0 635 1 2014 183 17 32 chr13 18421772 18421932 -83451237 - L1MB7 LINE L1 -295 7308 7147 702 136 24 8 chr13 18422370 18422495 -83450674 - L1MB7 LINE L1 -522 7075 6949 268 189 86 6 chr13 18422496 18422582 -83450587 - L1MB7 LINE L1 -715 6878 6793 1427 208 49 3 chr13 18422621 18422909 -83450260 - AluJo SINE Alu -11 301 1 3266 149 61 14 chr13 18423563 18423652 -83449517 - LTR31 LTR ERV1 0 619 536 522 31 0 0 chr13 18423652 18423716 -83449453 + (CAAG)n Simple_repeat Simple_repeat 1 64 0 3266 149 61 14 chr13 18423716 18424217 -83448952 - LTR31 LTR ERV1 -83 536 1 4972 106 1 16 chr13 18424293 18425029 -83448140 - L1MA3 LINE L1 -1 6304 5580 6721 206 51 17 chr13 18425129 18426765 -83446404 - L1MB7 LINE L1 -912 6653 5075 3901 101 28 14 chr13 18426765 18427278 -83445891 + L1PB1 LINE L1 5571 6100 -51 2092 120 43 7 chr13 18427278 18427578 -83445591 + AluSx SINE Alu 1 311 -1 3901 101 28 14 chr13 18427578 18427630 -83445539 + L1PB1 LINE L1 6100 6150 -1 6721 206 51 17 chr13 18427630 18428092 -83445077 - L1MB7 LINE L1 -2490 5075 4630 2417 160 34 14 chr13 18428092 18428510 -83444659 - MSTB LTR MaLR 0 426 1 6721 206 51 17 chr13 18428510 18430339 -83442830 - L1MB7 LINE L1 -2935 4630 2570 637 302 143 47 chr13 18430424 18430777 -83442392 + L2 LINE L2 2260 2578 -735 3523 142 38 28 chr13 18430777 18431381 -83441788 - MER4B LTR ERV1 0 610 1 637 302 143 47 chr13 18431381 18431476 -83441693 + L2 LINE L2 2578 2663 -650 3261 146 66 9 chr13 18431476 18432039 -83441130 - LTR49 LTR ERV1 0 595 1 637 302 143 47 chr13 18432039 18432543 -83440626 + L2 LINE L2 2663 3313 0 198 367 102 9 chr13 18432588 18432814 -83440355 - L2 LINE L2 -565 2749 2503 2674 159 19 80 chr13 18432843 18433408 -83439761 + LTR8 LTR ERV1 158 688 -3 209 333 21 21 chr13 18433466 18433562 -83439607 - L2 LINE L2 -929 2385 2290 3577 128 10 2 chr13 18433634 18434144 -83439025 - MER75 DNA T2_type 0 514 1 2183 306 68 17 chr13 18434335 18434865 -83438304 + MER89 LTR ERV1 3 559 0 324 313 31 57 chr13 18437015 18437149 -83436020 - Charlie2 DNA MER1_type -2641 221 94 2214 123 7 0 chr13 18437149 18437457 -83435712 - AluSx SINE Alu -2 310 1 324 313 31 57 chr13 18437457 18437549 -83435620 - Charlie2 DNA MER1_type -2768 94 1 322 269 170 6 chr13 18437614 18437785 -83435384 + MIR SINE MIR 5 203 -59 2390 100 3 0 chr13 18437869 18438180 -83434989 + AluSx SINE Alu 1 312 0 541 329 38 14 chr13 18438702 18438915 -83434254 + MIR SINE MIR 20 237 -25 458 209 9 0 chr13 18438915 18439020 -83434149 + L1M4 LINE L1 4109 4214 -1932 189 107 0 0 chr13 18439884 18439912 -83433257 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 336 239 0 54 chr13 18440080 18440172 -83432997 + MLT1B LTR MaLR 1 87 -287 3053 146 35 28 chr13 18440178 18440975 -83432194 - MER21A LTR ERV1 -6 925 1 1017 231 50 43 chr13 18440975 18441274 -83431895 + MLT1B LTR MaLR 89 389 -1 2130 118 16 7 chr13 18441689 18441993 -83431176 - AluSx SINE Alu -5 307 1 520 152 8 104 chr13 18442509 18442578 -83430591 + L1MB5 LINE L1 6056 6109 -65 2259 111 0 0 chr13 18442578 18442867 -83430302 - AluSx SINE Alu -23 289 1 520 152 8 104 chr13 18442867 18442922 -83430247 + L1MB5 LINE L1 6109 6168 -6 189 0 0 0 chr13 18442922 18442943 -83430226 + (T)n Simple_repeat Simple_repeat 1 21 0 22 56 0 0 chr13 18446332 18446368 -83426801 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr13 18446919 18446965 -83426204 + AT_rich Low_complexity Low_complexity 1 46 0 293 197 16 0 chr13 18447331 18447392 -83425777 - L1ME4a LINE L1 -71 6050 5989 2294 79 3 25 chr13 18447658 18447974 -83425195 + AluY SINE Alu 1 309 -2 280 246 109 69 chr13 18448063 18448238 -83424931 + L2 LINE L2 2205 2386 -928 361 363 70 18 chr13 18448769 18448818 -83424351 + L2 LINE L2 3078 3123 -149 2183 174 9 0 chr13 18448818 18449163 -83424006 + MER7A DNA MER2_type 1 346 0 361 363 70 18 chr13 18449163 18449284 -83423885 + L2 LINE L2 3123 3257 -15 215 293 93 0 chr13 18449943 18450018 -83423151 + L2 LINE L2 3232 3313 0 227 290 190 0 chr13 18451516 18451616 -83421553 - L2 LINE L2 0 3313 3195 1317 183 5 9 chr13 18451661 18451885 -83421284 - MER58A DNA MER1_type -1 223 1 337 302 84 11 chr13 18452185 18452364 -83420805 - MIR SINE MIR -50 212 21 870 126 68 5 chr13 18452420 18452610 -83420559 - AluSq SINE Alu -22 291 90 517 88 34 1 chr13 18453228 18453467 -83419702 + AluSq SINE Alu 1 279 -34 180 0 0 0 chr13 18453476 18453496 -83419673 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 820 290 122 52 chr13 18453594 18454118 -83419051 - MLT1K LTR MaLR -3 585 25 369 362 73 6 chr13 18455057 18455234 -83417935 + MIR3 SINE MIR 5 193 -15 2575 70 3 0 chr13 18456023 18456335 -83416834 + AluSp SINE Alu 1 313 0 423 295 70 0 chr13 18457131 18457260 -83415909 - MIR SINE MIR -75 187 50 564 167 0 9 chr13 18458354 18458462 -83414707 + MER50 LTR ERV1 499 605 -129 1982 107 4 18 chr13 18459886 18460158 -83413011 + AluSx SINE Alu 1 268 -44 1791 149 10 34 chr13 18461791 18462087 -83411082 + AluJo SINE Alu 1 289 -23 217 226 95 36 chr13 18462286 18462370 -83410799 + L2 LINE L2 3175 3263 -9 350 308 142 24 chr13 18464164 18464333 -83408836 + MIR SINE MIR 3 191 -71 291 226 16 0 chr13 18466854 18466916 -83406253 - MIR3 SINE MIR -50 158 96 236 298 8 66 chr13 18469004 18469125 -83404044 - L3 LINE CR1 -40 1537 1424 1995 67 85 4 chr13 18469524 18469794 -83403375 + L1MA3 LINE L1 6010 6301 -4 2082 127 10 0 chr13 18469796 18470087 -83403082 - AluSx SINE Alu -18 294 1 22 0 0 0 chr13 18470087 18470109 -83403060 + AT_rich Low_complexity Low_complexity 1 22 0 258 276 60 60 chr13 18470492 18470626 -83402543 - MLT1J LTR MaLR -48 463 330 514 196 29 65 chr13 18470839 18470977 -83402192 - MER20 DNA MER1_type -86 133 1 241 313 33 58 chr13 18471625 18471865 -83401304 - Tigger2 DNA MER2_type -1468 1250 1017 2876 168 27 35 chr13 18472019 18472583 -83400586 + MER89 LTR ERV1 1 559 0 1230 250 128 25 chr13 18473012 18473404 -83399765 - MLT1D LTR MaLR -17 488 57 222 333 103 0 chr13 18473500 18473578 -83399591 + L2 LINE L2 2720 2805 -509 186 328 30 60 chr13 18473627 18473761 -83399408 + L2 LINE L2 2896 3025 -247 * 586 286 124 32 chr13 18473759 18474074 -83399095 - L2 LINE L2 0 3313 2970 398 296 162 42 chr13 18474076 18474184 -83398985 - L2 LINE L2 -482 2832 2738 2736 130 30 28 chr13 18474184 18474615 -83398554 + MSTB1 LTR MaLR 1 432 0 398 296 162 42 chr13 18474615 18474814 -83398355 - L2 LINE L2 -576 2738 2488 261 288 36 27 chr13 18474980 18475091 -83398078 + MER5B DNA MER1_type 43 154 -24 186 43 0 0 chr13 18476347 18476370 -83396799 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 83 0 0 chr13 18477010 18477312 -83395857 - AluY SINE Alu -8 303 2 793 195 39 0 chr13 18478771 18478899 -83394270 + FLAM_A SINE Alu 1 133 0 25 0 0 0 chr13 18480021 18480046 -83393123 + AT_rich Low_complexity Low_complexity 1 25 0 303 155 48 36 chr13 18480321 18480405 -83392764 - HAL1b LINE L1 0 1348 1264 22 0 0 0 chr13 18481133 18481155 -83392014 + AT_rich Low_complexity Low_complexity 1 22 0 729 267 146 39 chr13 18481362 18481897 -83391272 - L1MC4a LINE L1 -1926 5882 5291 25 0 0 0 chr13 18482248 18482273 -83390896 + AT_rich Low_complexity Low_complexity 1 25 0 1193 118 0 6 chr13 18482484 18482653 -83390516 + L1MB8 LINE L1 6011 6178 0 247 167 0 0 chr13 18484414 18484456 -83388713 - MIR SINE MIR -3 259 218 199 184 26 0 chr13 18484423 18484461 -83388708 - L2 LINE L2 -18 3254 3216 * 1175 142 12 0 chr13 18484463 18484632 -83388537 + Tigger4(Zombi) DNA MER2_type 3 173 -2558 3568 112 29 11 chr13 18484634 18485129 -83388040 + Tigger4(Zombi) DNA MER2_type 2170 2677 -54 182 62 31 0 chr13 18485129 18485161 -83388008 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 3568 112 29 11 chr13 18485161 18485217 -83387952 + Tigger4(Zombi) DNA MER2_type 2677 2731 0 336 269 59 34 chr13 18485275 18485394 -83387775 - MIR SINE MIR -117 145 24 1479 179 32 65 chr13 18485949 18486257 -83386912 - AluJo SINE Alu -14 298 1 2217 119 3 0 chr13 18487257 18487560 -83385609 + AluSq SINE Alu 1 304 -9 203 277 78 92 chr13 18488133 18488404 -83384765 - L2 LINE L2 -494 2820 2554 2080 132 3 0 chr13 18489737 18490033 -83383136 - AluJb SINE Alu -7 305 9 279 0 0 0 chr13 18490339 18490370 -83382799 + (TG)n Simple_repeat Simple_repeat 1 31 0 213 39 0 0 chr13 18490369 18490395 -83382774 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2201 116 0 13 chr13 18491243 18491545 -83381624 - AluSx SINE Alu -14 298 1 1101 132 68 29 chr13 18491619 18491824 -83381345 - MER20 DNA MER1_type 0 219 7 2248 118 0 16 chr13 18492205 18492518 -83380651 + AluSx SINE Alu 1 308 -4 329 382 0 0 chr13 18493148 18493279 -83379890 - MIR SINE MIR -117 145 15 344 250 144 30 chr13 18493294 18493426 -83379743 - MER117 DNA MER1_type -9 188 42 52 0 0 0 chr13 18493947 18493999 -83379170 + AT_rich Low_complexity Low_complexity 1 52 0 1867 111 89 0 chr13 18495222 18495492 -83377677 - AluSx SINE Alu -18 294 1 570 239 81 47 chr13 18495869 18496103 -83377066 + L2 LINE L2 3051 3292 -21 360 310 94 61 chr13 18496257 18496651 -83376518 + MLT1K LTR MaLR 128 534 -54 1094 129 0 12 chr13 18496664 18496827 -83376342 + AluSx SINE Alu 1 161 -151 22 0 0 0 chr13 18497314 18497336 -83375833 + AT_rich Low_complexity Low_complexity 1 22 0 2247 176 23 45 chr13 18497838 18498151 -83375018 + MER65C LTR ERV1 1 302 -159 1671 208 0 0 chr13 18498151 18498463 -83374706 - AluJb SINE Alu 0 312 1 2247 176 23 45 chr13 18498463 18498620 -83374549 + MER65C LTR ERV1 302 461 0 27 62 0 0 chr13 18498910 18498958 -83374211 + AT_rich Low_complexity Low_complexity 1 48 0 407 171 0 0 chr13 18499490 18499560 -83373609 + MER65C LTR ERV1 249 318 -143 226 204 0 0 chr13 18499559 18499603 -83373566 - AluSq SINE Alu -3 299 256 * 2091 125 0 0 chr13 18499656 18499936 -83373233 - AluSq SINE Alu -33 280 1 523 268 146 5 chr13 18500370 18500583 -83372586 + MIR SINE MIR 18 260 -2 414 57 0 0 chr13 18500588 18500641 -83372528 + (TG)n Simple_repeat Simple_repeat 2 54 0 2186 94 7 36 chr13 18502002 18502311 -83370858 + AluY SINE Alu 1 300 -11 299 284 159 5 chr13 18502888 18503096 -83370073 + MIR SINE MIR 10 249 -13 2475 186 243 70 chr13 18503212 18504082 -83369087 + LTR28 LTR ERV1 1 1020 0 2028 135 0 7 chr13 18505036 18505333 -83367836 + AluJb SINE Alu 1 295 -17 489 34 0 0 chr13 18505333 18505392 -83367777 + (TA)n Simple_repeat Simple_repeat 1 59 0 1891 170 3 0 chr13 18505435 18505735 -83367434 + AluJb SINE Alu 1 301 -11 206 368 53 0 chr13 18505811 18505887 -83367282 + L2 LINE L2 3168 3247 -25 1754 154 16 20 chr13 18506419 18506725 -83366444 + AluJo SINE Alu 1 305 -7 280 322 0 11 chr13 18507556 18507646 -83365523 + CT-rich Low_complexity Low_complexity 2 90 0 210 191 24 0 chr13 18507687 18507729 -83365440 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1295 206 45 76 chr13 18507865 18508327 -83364842 + MER39 LTR ERV1 260 707 0 268 169 169 56 chr13 18509597 18509668 -83363501 - L2 LINE L2 -2 3311 3233 1945 110 37 33 chr13 18509893 18510192 -83362977 - AluSx SINE Alu -12 300 1 888 141 0 16 chr13 18510679 18510807 -83362362 + FLAM_C SINE Alu 1 126 -7 429 257 7 59 chr13 18510838 18510974 -83362195 + MIR SINE MIR 104 232 -30 606 293 114 74 chr13 18511886 18512708 -83360461 + L2 LINE L2 2467 3312 -1 199 256 73 49 chr13 18513810 18513892 -83359277 - MIR SINE MIR -107 101 18 2208 118 7 7 chr13 18515368 18515673 -83357496 + AluSx SINE Alu 1 305 -7 1078 246 9 9 chr13 18515800 18516020 -83357149 + MER58A DNA MER1_type 1 220 -4 183 80 0 0 chr13 18516715 18516740 -83356429 + (TTTTTA)n Simple_repeat Simple_repeat 3 27 0 2094 108 45 0 chr13 18517059 18517346 -83355823 - AluSx SINE Alu -12 300 1 556 279 50 6 chr13 18517708 18517887 -83355282 - MIR SINE MIR -56 206 20 543 291 10 66 chr13 18517948 18518144 -83355025 + MIR3 SINE MIR 20 204 -4 1332 267 86 80 chr13 18518578 18519278 -83353891 + MER21B LTR ERV1 6 709 -154 1072 261 54 45 chr13 18519278 18519723 -83353446 + L2 LINE L2 2857 3305 -8 2120 85 0 0 chr13 18519926 18520185 -83352984 - AluY SINE Alu -20 291 33 186 43 0 0 chr13 18520843 18520866 -83352303 + (T)n Simple_repeat Simple_repeat 1 23 0 1123 162 6 0 chr13 18521439 18521618 -83351551 + AluSg/x SINE Alu 133 312 0 2093 192 8 0 chr13 18521641 18522006 -83351163 + MER93b LTR ERV1 5 372 -1 241 186 0 51 chr13 18522192 18522251 -83350918 - Charlie3 DNA MER1_type -637 2073 2018 754 279 131 46 chr13 18522260 18522718 -83350451 + L3 LINE CR1 740 1236 -341 181 323 0 15 chr13 18522783 18522848 -83350321 - L2 LINE L2 -8 3264 3201 1827 209 92 35 chr13 18522964 18523418 -83349751 + MLT2B1 LTR ERVL 1 480 -40 2101 128 19 53 chr13 18523419 18523795 -83349374 - THE1B LTR MaLR 0 364 2 5097 78 1 6 chr13 18523796 18524446 -83348723 - THE1B-int LTR MaLR 0 1580 934 1704 156 11 7 chr13 18525149 18525424 -83347745 + AluJb SINE Alu 2 277 -35 227 31 31 0 chr13 18525427 18525459 -83347710 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2209 109 0 6 chr13 18525995 18526307 -83346862 + AluSp SINE Alu 3 312 -1 1858 153 3 31 chr13 18526982 18527302 -83345867 + AluJb SINE Alu 1 311 -1 292 309 52 15 chr13 18527365 18527501 -83345668 + MIR SINE MIR 12 152 -110 2201 105 11 0 chr13 18528744 18529030 -83344139 + AluSc SINE Alu 2 290 -19 1339 134 99 95 chr13 18529337 18529651 -83343518 + AluJb SINE Alu 1 315 0 2586 92 48 28 chr13 18529823 18530180 -83342989 - THE1B LTR MaLR 0 364 1 567 29 0 0 chr13 18531197 18531266 -83341903 + (TG)n Simple_repeat Simple_repeat 2 70 0 973 223 27 0 chr13 18531724 18531908 -83341261 + MER5A DNA MER1_type 1 189 0 285 29 0 0 chr13 18531960 18531994 -83341175 + (TG)n Simple_repeat Simple_repeat 2 35 0 264 259 121 52 chr13 18532235 18532351 -83340818 - MIR3 SINE MIR -27 181 58 183 328 0 0 chr13 18533017 18533081 -83340088 + L2 LINE L2 3250 3313 0 2250 100 10 0 chr13 18533820 18534119 -83339050 - AluSc SINE Alu -7 302 1 204 212 45 91 chr13 18534575 18534641 -83338528 + L2 LINE L2 3170 3232 -40 21 36 0 0 chr13 18535205 18535233 -83337936 + AT_rich Low_complexity Low_complexity 1 28 0 3050 106 50 10 chr13 18535233 18535734 -83337435 - LTR9B LTR ERV1 -82 562 42 1232 136 0 0 chr13 18535742 18535941 -83337228 - HUERS-P3 LTR ERV1 -3 8916 8718 1249 141 5 0 chr13 18535983 18536182 -83336987 - LTR9B LTR ERV1 0 644 445 437 309 137 44 chr13 18536582 18536990 -83336179 - L2 LINE L2 -401 2913 2468 325 337 31 0 chr13 18537047 18537145 -83336024 - L2 LINE L2 -3 3269 3169 306 348 79 0 chr13 18537837 18538015 -83335154 - L2 LINE L2 -534 2780 2589 337 305 16 75 chr13 18538029 18538111 -83335058 + MIR SINE MIR 87 172 -90 481 250 44 61 chr13 18538111 18538291 -83334878 + MER69A DNA AcHobo 1 177 0 337 305 16 75 chr13 18538291 18538395 -83334774 + MIR SINE MIR 172 262 0 326 340 106 30 chr13 18538401 18538769 -83334400 - L2 LINE L2 -817 2497 2102 605 206 82 38 chr13 18538769 18539044 -83334125 + L1MD3 LINE L1 6080 7984 -11 185 81 0 27 chr13 18539044 18539081 -83334088 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 399 119 0 0 chr13 18539422 18539489 -83333680 + (GA)n Simple_repeat Simple_repeat 2 68 0 403 167 117 0 chr13 18539716 18539811 -83333358 + MER5A DNA MER1_type 4 112 -77 2266 100 0 7 chr13 18540473 18540772 -83332397 - AluSx SINE Alu -15 297 1 1894 132 4 0 chr13 18541169 18541449 -83331720 + AluSq SINE Alu 33 313 0 322 278 21 21 chr13 18542208 18542305 -83330864 + MIR SINE MIR 163 259 -3 2060 92 0 0 chr13 18542566 18542827 -83330342 - AluY SINE Alu -50 261 1 26 0 0 0 chr13 18542898 18542924 -83330245 + AT_rich Low_complexity Low_complexity 1 26 0 632 259 121 45 chr13 18542937 18543161 -83330008 - MIR SINE MIR -21 241 1 378 309 79 26 chr13 18543175 18543327 -83329842 - MIR SINE MIR -51 211 52 219 330 25 85 chr13 18543473 18543591 -83329578 + MIR SINE MIR 1 111 -151 207 338 26 0 chr13 18543724 18543801 -83329368 + MIR SINE MIR 56 134 -128 2733 111 24 32 chr13 18546017 18546438 -83326731 - MER4E LTR ERV1 0 766 343 2845 104 60 39 chr13 18546438 18546920 -83326249 - LTR22B LTR ERVK 0 492 1 2733 111 24 32 chr13 18546920 18546964 -83326205 - MER4E LTR ERV1 -423 343 300 482 95 12 60 chr13 18546964 18547048 -83326121 + MADE1 DNA Mariner 1 80 0 2733 111 24 32 chr13 18547048 18547189 -83325980 - MER4E LTR ERV1 -466 300 1 972 194 6 0 chr13 18547515 18547685 -83325484 + FRAM SINE Alu 1 170 -6 346 250 13 0 chr13 18547731 18547807 -83325362 + L2 LINE L2 3196 3272 0 1785 224 35 25 chr13 18548052 18548563 -83324606 - MER77 LTR ERV1 -8 597 1 2777 190 44 10 chr13 18548841 18549435 -83323734 + MER90 LTR ERV1 1 614 0 234 91 0 0 chr13 18549676 18549709 -83323460 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 1658 175 0 45 chr13 18549869 18550177 -83322992 - AluJb SINE Alu -18 294 1 468 273 159 18 chr13 18551493 18551516 -83321653 - MIR SINE MIR -7 255 237 806 140 7 37 chr13 18551516 18551652 -83321517 - FLAM_C SINE Alu 0 133 2 468 273 159 18 chr13 18551652 18551848 -83321321 - MIR SINE MIR -25 237 5 471 256 279 0 chr13 18551871 18552090 -83321079 + Charlie2a DNA MER1_type 14 293 -2489 273 192 39 26 chr13 18552738 18552816 -83320353 + Charlie2a DNA MER1_type 608 686 -2176 1172 185 198 0 chr13 18552833 18553231 -83319938 - MER69 DNA AcHobo -5 2521 2043 760 283 135 7 chr13 18553237 18553541 -83319628 - MER69 DNA AcHobo -598 628 286 2045 182 36 49 chr13 18553541 18553560 -83319609 - L1M4 LINE L1 -1373 4773 4755 2189 104 7 0 chr13 18553560 18553859 -83319310 - AluSp SINE Alu -12 301 1 2045 182 36 49 chr13 18553859 18554395 -83318774 - L1M4 LINE L1 -1391 4755 4225 239 257 37 9 chr13 18554422 18554531 -83318638 + Charlie2 DNA MER1_type 2375 2486 -376 1655 155 11 7 chr13 18554559 18554837 -83318332 - AluJb SINE Alu -33 279 1 1057 176 66 25 chr13 18554882 18555200 -83317969 + Charlie2 DNA MER1_type 2532 2862 0 527 123 0 0 chr13 18555288 18555361 -83317808 + AluS SINE Alu 1 73 -239 1687 147 0 8 chr13 18555361 18555619 -83317550 + AluSx SINE Alu 42 297 -15 22 0 0 0 chr13 18556389 18556411 -83316758 + GC_rich Low_complexity Low_complexity 1 22 0 1027 116 0 43 chr13 18558776 18558940 -83314229 - FRAM SINE Alu -1 175 19 189 289 324 0 chr13 18558997 18559139 -83314030 + MIR SINE MIR 68 255 -7 1027 244 137 18 chr13 18559235 18559783 -83313386 - Charlie2 DNA MER1_type -18 2844 2232 842 262 33 50 chr13 18559831 18560133 -83313036 - Charlie2 DNA MER1_type -2564 298 2 898 164 175 26 chr13 18560140 18560329 -83312840 + MER20 DNA MER1_type 3 219 0 626 197 105 7 chr13 18560381 18560533 -83312636 - MER58C DNA MER1_type -3 212 46 289 315 158 7 chr13 18560533 18560679 -83312490 + MIR SINE MIR 86 253 -9 1205 181 33 13 chr13 18561279 18561583 -83311586 + MER33 DNA MER1_type 9 318 -6 904 275 128 18 chr13 18561657 18562155 -83311014 - HAL1 LINE L1 -98 2409 1857 1931 268 96 55 chr13 18562250 18562453 -83310716 - HAL1 LINE L1 -905 1602 1409 2049 86 0 4 chr13 18562453 18562720 -83310449 - AluY SINE Alu -5 306 41 1931 268 96 55 chr13 18562720 18562747 -83310422 - HAL1 LINE L1 -1098 1409 1385 1898 152 10 16 chr13 18562747 18563056 -83310113 - AluJo SINE Alu -5 307 1 1931 268 96 55 chr13 18563056 18563188 -83309981 - HAL1 LINE L1 -1122 1385 1260 1683 115 35 8 chr13 18563188 18563449 -83309720 - AluSx SINE Alu -5 307 40 1931 268 96 55 chr13 18563449 18563845 -83309324 - HAL1 LINE L1 -1247 1260 882 222 105 0 0 chr13 18563845 18563883 -83309286 + (TG)n Simple_repeat Simple_repeat 1 38 0 1931 268 96 55 chr13 18563883 18564574 -83308595 - HAL1 LINE L1 -1625 882 90 3655 170 40 28 chr13 18564660 18565134 -83308035 - MER44D DNA MER2_type -1882 605 245 2155 121 32 22 chr13 18565134 18565505 -83307664 - THE1C LTR MaLR 0 375 1 3655 170 40 28 chr13 18565505 18565754 -83307415 - MER44D DNA MER2_type -2242 245 1 1133 234 101 15 chr13 18565754 18566443 -83306726 - L1ME3 LINE L1 -80 6082 5323 332 299 25 70 chr13 18566811 18566968 -83306201 - L2 LINE L2 0 3313 3164 21 57 0 0 chr13 18567995 18568030 -83305139 + AT_rich Low_complexity Low_complexity 1 35 0 1080 165 52 19 chr13 18568233 18568445 -83304724 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr13 18569395 18569423 -83303746 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr13 18569810 18569835 -83303334 + (A)n Simple_repeat Simple_repeat 1 25 0 2000 136 0 37 chr13 18570308 18570631 -83302538 - AluSx SINE Alu -1 311 1 691 222 49 6 chr13 18570671 18570833 -83302336 + MIR SINE MIR 31 199 -63 770 289 72 0 chr13 18571603 18571838 -83301331 + MIR SINE MIR 11 262 0 23 54 0 0 chr13 18572021 18572058 -83301111 + AT_rich Low_complexity Low_complexity 1 37 0 231 36 0 0 chr13 18572386 18572414 -83300755 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr13 18572998 18573027 -83300142 + AT_rich Low_complexity Low_complexity 1 29 0 1018 169 0 28 chr13 18573727 18573905 -83299264 - AluJb SINE Alu -17 295 123 275 372 24 64 chr13 18574180 18574476 -83298693 - L2 LINE L2 -53 3219 2936 187 238 0 0 chr13 18574542 18574584 -83298585 + L2 LINE L2 3272 3313 0 2126 98 0 21 chr13 18574848 18575135 -83298034 - AluSx SINE Alu -31 281 1 283 244 24 0 chr13 18575225 18575307 -83297862 - L1MC4a LINE L1 -1884 5924 5841 2264 136 17 8 chr13 18576608 18576969 -83296200 + MLT1A1 LTR MaLR 2 365 0 3258 59 2 7 chr13 18577710 18578154 -83295015 + LTR7 LTR ERV1 1 442 -8 1731 246 79 13 chr13 18578177 18578710 -83294459 - MLT1G LTR MaLR 0 590 23 1829 147 0 4 chr13 18580367 18580647 -83292522 - AluSx SINE Alu 0 312 30 3550 51 0 7 chr13 18580649 18581100 -83292069 - LTR7 LTR ERV1 -2 448 1 2443 71 45 13 chr13 18581100 18581478 -83291691 - HERVH LTR ERV1 0 7713 7324 1267 143 19 0 chr13 18581478 18581694 -83291475 - HERVH LTR ERV1 -1894 5819 5600 4086 138 6 1 chr13 18581695 18582354 -83290815 - HERVH LTR ERV1 -2564 5149 4488 3273 107 0 6 chr13 18582356 18582861 -83290308 - HERVH LTR ERV1 -3720 3993 3492 * 19010 87 57 34 chr13 18582851 18586023 -83287146 - HERVH LTR ERV1 -4423 3290 46 239 195 49 73 chr13 18586023 18586070 -83287099 - AluY SINE Alu -221 80 34 3466 54 9 5 chr13 18586070 18586516 -83286653 - LTR7 LTR ERV1 -2 448 1 239 195 49 73 chr13 18586516 18586550 -83286619 - AluY SINE Alu -267 34 1 472 185 198 51 chr13 18588752 18588909 -83284260 + MER5A DNA MER1_type 10 189 0 3376 144 29 10 chr13 18588978 18589568 -83283601 - MER7C DNA MER2_type -1 601 1 704 103 0 47 chr13 18590115 18590222 -83282947 + FLAM_A SINE Alu 17 118 -24 2172 112 10 0 chr13 18590731 18591034 -83282135 - AluSq SINE Alu -6 307 2 2559 161 57 39 chr13 18591527 18592366 -83280803 + MER73 LTR ERVL 1 640 -4 556 275 145 19 chr13 18592621 18592828 -83280341 - MIR SINE MIR -9 253 21 3334 117 86 16 chr13 18592939 18593520 -83279649 - L1PA16 LINE L1 0 6166 5545 2333 94 0 0 chr13 18593581 18593878 -83279291 - AluY SINE Alu -14 297 1 337 263 30 30 chr13 18595975 18596074 -83277095 - MIR SINE MIR -70 138 40 919 290 107 30 chr13 18597304 18597735 -83275434 - L2 LINE L2 -1 3312 2849 21 36 0 0 chr13 18599090 18599118 -83274051 + AT_rich Low_complexity Low_complexity 1 28 0 2048 122 80 11 chr13 18599858 18600234 -83272935 + L1MA3 LINE L1 5904 6305 0 976 224 14 0 chr13 18600286 18600500 -83272669 + MER58A DNA MER1_type 1 217 -7 330 272 130 6 chr13 18600907 18601076 -83272093 - L1ME LINE L1 -358 5812 5623 307 320 128 57 chr13 18601307 18601673 -83271496 - L1ME LINE L1 -1116 5030 4639 637 152 0 9 chr13 18601750 18601855 -83271314 + FLAM_C SINE Alu 5 108 -35 1690 222 158 21 chr13 18601864 18602225 -83270944 - L1MEc LINE L1 -5594 802 492 3670 81 140 27 chr13 18602225 18602818 -83270351 + PABL_A LTR ERV1 1 660 0 1690 222 158 21 chr13 18602818 18603131 -83270038 - L1MEc LINE L1 -5904 492 35 2022 112 7 20 chr13 18603231 18603525 -83269644 + AluSg SINE Alu 1 290 -20 872 219 35 101 chr13 18603656 18603994 -83269175 - MLT2D LTR ERVL -8 406 91 1720 90 59 67 chr13 18604071 18604427 -83268742 + MER4E LTR ERV1 425 777 -2 529 291 19 34 chr13 18605882 18606088 -83267081 + MIR SINE MIR 12 214 -48 338 225 34 22 chr13 18606137 18606226 -83266943 + L2 LINE L2 3221 3310 -3 2410 74 0 10 chr13 18606448 18606757 -83266412 + AluSg SINE Alu 1 306 -4 22 70 0 0 chr13 18606937 18606980 -83266189 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 18607324 18607353 -83265816 + AT_rich Low_complexity Low_complexity 1 29 0 189 386 14 73 chr13 18607577 18607797 -83265372 - L2 LINE L2 -94 3178 2972 1712 192 68 34 chr13 18607824 18608266 -83264903 + LTR2B LTR ERV1 34 490 0 388 279 82 14 chr13 18608724 18608871 -83264298 - MIR SINE MIR -65 197 41 746 272 181 48 chr13 18608939 18609457 -83263712 - MLT1G1 LTR MaLR -8 587 1 1814 260 53 13 chr13 18609690 18610217 -83262952 + L2 LINE L2 1284 1831 -1483 231 269 45 0 chr13 18610480 18610547 -83262622 - MIR SINE MIR -73 189 120 2121 117 7 19 chr13 18610547 18610854 -83262315 + AluSq SINE Alu 1 303 -10 185 333 0 0 chr13 18610858 18610906 -83262263 + L2 LINE L2 2222 2269 -1045 21 57 0 0 chr13 18610953 18610988 -83262181 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 18611003 18611024 -83262145 + AT_rich Low_complexity Low_complexity 1 21 0 386 341 29 29 chr13 18611031 18611236 -83261933 + L1M4 LINE L1 3985 4189 -1957 23 0 0 0 chr13 18611298 18611321 -83261848 + AT_rich Low_complexity Low_complexity 1 23 0 1329 105 9 22 chr13 18611623 18611852 -83261317 - MER4D LTR ERV1 -638 234 9 1348 194 42 9 chr13 18611864 18612215 -83260954 - MER4D-int LTR ERV1 0 7097 6385 560 140 103 10 chr13 18612221 18612360 -83260809 - MER4D-int LTR ERV1 -624 6134 3950 690 186 6 98 chr13 18612610 18612793 -83260376 - MER4D-int LTR ERV1 -4168 3952 3787 392 211 66 40 chr13 18612925 18613061 -83260108 - LTR38B-int LTR ERV1 -1865 4733 4594 4996 149 72 84 chr13 18613061 18614527 -83258642 - LTR38B-int LTR ERV1 0 1919 1479 2339 79 0 25 chr13 18614527 18614843 -83258326 + AluY SINE Alu 1 308 -3 4996 149 72 84 chr13 18614843 18616207 -83256962 - LTR38B-int LTR ERV1 -440 1479 100 205 156 0 0 chr13 18616208 18616240 -83256929 + GA-rich Low_complexity Low_complexity 1 32 0 820 299 12 16 chr13 18616489 18616740 -83256429 - LTR38B-int LTR ERV1 -1422 364 115 1140 149 70 13 chr13 18616821 18617049 -83256120 - LTR38B LTR ERV1 -25 585 345 375 145 53 0 chr13 18617076 18617160 -83256009 + LTR38B LTR ERV1 522 610 -1 543 53 0 0 chr13 18617181 18617256 -83255913 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2217 111 0 29 chr13 18617258 18617574 -83255595 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 18617621 18617642 -83255527 + AT_rich Low_complexity Low_complexity 1 21 0 513 286 105 46 chr13 18618332 18618570 -83254599 + MIR SINE MIR 8 259 -3 293 230 15 30 chr13 18618647 18618782 -83254387 + (TA)n Simple_repeat Simple_repeat 2 134 0 314 89 13 127 chr13 18620920 18620965 -83252204 - L1MB4 LINE L1 -2 6178 6144 1866 166 3 0 chr13 18620965 18621260 -83251909 - AluJb SINE Alu -16 296 1 314 89 13 127 chr13 18621260 18621293 -83251876 - L1MB4 LINE L1 -36 6144 6109 23 0 0 0 chr13 18621458 18621481 -83251688 + AT_rich Low_complexity Low_complexity 1 23 0 372 268 6 55 chr13 18621561 18621744 -83251425 - MLT1J LTR MaLR -78 433 260 266 298 6 57 chr13 18621827 18621985 -83251184 - MLT1J1 LTR MaLR -296 150 1 746 260 41 32 chr13 18622957 18623176 -83249993 - MER58A DNA MER1_type -3 221 1 307 267 200 13 chr13 18623184 18623334 -83249835 - MER5B DNA MER1_type 0 178 1 486 357 130 34 chr13 18623451 18624305 -83248864 - L2 LINE L2 -424 2890 1955 525 276 156 16 chr13 18624462 18624654 -83248515 + MIR SINE MIR 23 241 -21 2114 82 60 0 chr13 18624879 18625161 -83248008 - AluSx SINE Alu -13 299 1 3658 56 2 2 chr13 18625353 18625816 -83247353 - L1PA10 LINE L1 -2 6166 5704 217 224 122 0 chr13 18625886 18625935 -83247234 - MER5B DNA MER1_type -74 104 50 2495 44 10 0 chr13 18627674 18627972 -83245197 + AluY SINE Alu 1 301 -10 22 0 0 0 chr13 18629205 18629227 -83243942 + AT_rich Low_complexity Low_complexity 1 22 0 355 337 92 30 chr13 18629885 18630220 -83242949 + HAL1 LINE L1 306 661 -1846 21 0 0 0 chr13 18630293 18630314 -83242855 + AT_rich Low_complexity Low_complexity 1 21 0 409 338 25 50 chr13 18630324 18630525 -83242644 + LTR16B LTR ERVL 1 196 -268 10734 197 16 20 chr13 18630574 18630725 -83242444 - L1PB3 LINE L1 -1 6153 6003 2244 112 0 13 chr13 18630725 18631038 -83242131 - AluSg SINE Alu -1 309 1 10734 197 16 20 chr13 18631038 18633720 -83239449 - L1PB3 LINE L1 -151 6003 3357 2143 134 3 0 chr13 18633720 18634018 -83239151 - AluSx SINE Alu -13 299 1 10734 197 16 20 chr13 18634018 18635566 -83237603 - L1PB3 LINE L1 -2797 3357 1803 746 131 0 0 chr13 18635566 18635673 -83237496 - U6 snRNA snRNA 0 107 1 484 241 42 47 chr13 18635690 18635902 -83237267 + LTR16B LTR ERVL 242 452 -12 865 320 48 17 chr13 18636123 18636601 -83236568 + HERV16 LTR ERVL 283 775 -4221 1161 306 23 24 chr13 18636634 18637488 -83235681 + HERV16 LTR ERVL 1664 2577 -2419 871 277 5 8 chr13 18637493 18637762 -83235407 + L1MCa LINE L1 3 250 -5795 835 212 94 0 chr13 18637754 18637966 -83235203 + L1MCa LINE L1 2920 3151 -3413 * 465 268 57 0 chr13 18637968 18638091 -83235078 + L2 LINE L2 3184 3313 0 22 35 0 0 chr13 18639291 18639320 -83233849 + AT_rich Low_complexity Low_complexity 1 29 0 189 355 0 37 chr13 18639694 18639801 -83233368 + L2 LINE L2 715 817 -2497 874 338 38 11 chr13 18641399 18641849 -83231320 - HERVL LTR ERVL -1300 4354 3893 611 303 51 0 chr13 18642619 18642794 -83230375 + MIR SINE MIR 31 214 -48 1044 189 320 53 chr13 18642990 18643478 -83229691 + MER51A LTR ERV1 1 618 -16 3908 117 44 2 chr13 18643933 18644542 -83228627 - MER41B LTR ERV1 0 635 1 225 262 202 0 chr13 18644902 18644986 -83228183 - MIR3 SINE MIR -21 187 87 360 282 68 8 chr13 18644999 18645116 -83228053 - L2 LINE L2 -12 3260 3137 2242 113 0 0 chr13 18645116 18645418 -83227751 - AluSc SINE Alu -7 302 1 1825 133 82 20 chr13 18646238 18646591 -83226578 + THE1C LTR MaLR 1 375 0 2096 108 17 3 chr13 18647164 18647459 -83225710 - AluSx SINE Alu -11 301 3 218 259 17 0 chr13 18648184 18648242 -83224927 + MIR SINE MIR 204 262 0 2251 106 0 3 chr13 18648266 18648567 -83224602 + AluSx SINE Alu 1 300 -12 21 36 0 0 chr13 18648670 18648698 -83224471 + AT_rich Low_complexity Low_complexity 1 28 0 1819 113 109 0 chr13 18649208 18649483 -83223686 + AluSq SINE Alu 1 305 -8 222 323 88 80 chr13 18649983 18650246 -83222923 - L2 LINE L2 -976 2338 2074 189 333 141 0 chr13 18650605 18650704 -83222465 + L2 LINE L2 2923 3035 -237 485 237 138 69 chr13 18650719 18650951 -83222218 + MIR SINE MIR 15 262 0 640 298 57 66 chr13 18651922 18652271 -83220898 - L3 LINE CR1 -163 1414 1069 196 324 131 42 chr13 18652366 18652625 -83220544 + L2 LINE L2 2694 2975 -339 283 295 39 0 chr13 18652782 18652860 -83220309 + L2 LINE L2 3192 3272 0 33 25 0 0 chr13 18654431 18654471 -83218698 + AT_rich Low_complexity Low_complexity 1 40 0 8315 120 28 10 chr13 18654517 18655891 -83217278 - Tigger1 DNA MER2_type 0 2418 1021 5678 131 24 52 chr13 18656026 18657078 -83216091 - Tigger1 DNA MER2_type -1396 1022 1 1742 167 13 10 chr13 18657221 18657521 -83215648 + AluJo SINE Alu 1 301 -11 403 271 10 0 chr13 18657955 18658051 -83215118 - MER68 LTR ERV1 0 562 466 381 162 0 0 chr13 18658051 18658119 -83215050 + CT-rich Low_complexity Low_complexity 4 71 0 2175 200 10 49 chr13 18658144 18658630 -83214539 - MER68 LTR ERV1 -95 467 1 462 194 30 139 chr13 18658868 18658919 -83214250 - LTR16A LTR ERVL -8 442 387 2235 120 3 0 chr13 18658919 18659228 -83213941 - AluSp SINE Alu -3 310 1 462 194 30 139 chr13 18659228 18659243 -83213926 - LTR16A LTR ERVL -63 387 372 2059 140 0 7 chr13 18659243 18659535 -83213634 - AluSx SINE Alu -22 290 1 462 194 30 139 chr13 18659535 18659632 -83213537 - LTR16A LTR ERVL -78 372 296 1923 251 81 30 chr13 18660351 18660567 -83212602 + L1ME3A LINE L1 5340 5544 -626 1921 152 139 16 chr13 18660567 18660948 -83212221 - MSTA LTR MaLR 0 428 1 1923 251 81 30 chr13 18660948 18661488 -83211681 + L1ME3A LINE L1 5544 6134 -36 34 55 0 0 chr13 18662443 18662498 -83210671 + AT_rich Low_complexity Low_complexity 1 55 0 1651 163 27 18 chr13 18662618 18662949 -83210220 - MER44D DNA MER2_type 0 609 6 241 390 78 7 chr13 18662967 18663121 -83210048 + MIR SINE MIR 24 188 -74 311 186 124 183 chr13 18663352 18663483 -83209686 + MER112 DNA MER1_type 2 110 -150 1653 184 6 34 chr13 18663483 18663804 -83209365 - AluJo SINE Alu 0 312 1 311 186 124 183 chr13 18663804 18663946 -83209223 + MER112 DNA MER1_type 110 259 -1 21 0 0 0 chr13 18664275 18664296 -83208873 + AT_rich Low_complexity Low_complexity 1 21 0 693 217 0 0 chr13 18664343 18664472 -83208697 + FRAM SINE Alu 22 150 -26 1026 204 0 0 chr13 18664492 18664698 -83208471 - L1MB7 LINE L1 -57 6127 5922 1904 138 52 0 chr13 18664702 18665028 -83208141 - MER7A DNA MER2_type 0 346 6 4870 205 36 21 chr13 18665037 18665591 -83207578 - L1MB7 LINE L1 -251 5923 5379 1100 174 158 26 chr13 18665591 18665664 -83207505 - MER2 DNA MER2_type 0 344 282 218 32 32 0 chr13 18665664 18665695 -83207474 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1100 174 158 26 chr13 18665695 18665925 -83207244 - MER2 DNA MER2_type -62 282 1 4870 205 36 21 chr13 18665925 18667270 -83205899 - L1MB7 LINE L1 -795 5379 3995 412 234 44 0 chr13 18667275 18667412 -83205757 + L1M4 LINE L1 2988 3130 -3016 * 478 238 0 21 chr13 18667408 18667551 -83205618 - L1MB7 LINE L1 -2487 3659 3520 2234 245 49 17 chr13 18667551 18668436 -83204733 - L1M4c LINE L1 -4320 2505 1459 1851 164 137 33 chr13 18668453 18668971 -83204198 - LTR49 LTR ERV1 -23 572 1 3809 195 32 21 chr13 18668971 18669841 -83203328 - L1M4c LINE L1 -5075 1467 588 900 161 76 85 chr13 18669856 18670080 -83203089 - AluSg/x SINE Alu -15 297 76 889 139 0 29 chr13 18670106 18670243 -83202926 - AluSq/x SINE Alu -179 133 1 1642 213 21 77 chr13 18670244 18670803 -83202366 - L1M4c LINE L1 -5977 565 38 679 217 0 0 chr13 18670841 18670998 -83202171 + L1M4 LINE L1 1025 1181 -5361 366 292 62 8 chr13 18672050 18672180 -83200989 + MIR3 SINE MIR 49 185 -23 38 0 0 38 chr13 18672882 18672910 -83200259 + AT_rich Low_complexity Low_complexity 1 28 -23 2133 125 3 20 chr13 18672910 18673214 -83199955 + AluSx SINE Alu 1 299 -13 38 0 0 38 chr13 18673214 18673238 -83199931 + AT_rich Low_complexity Low_complexity 28 51 0 310 259 58 86 chr13 18673437 18673576 -83199593 + MIR3 SINE MIR 5 139 -69 1713 136 66 17 chr13 18673909 18674196 -83198973 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr13 18674331 18674352 -83198817 + AT_rich Low_complexity Low_complexity 1 21 0 3530 181 26 4 chr13 18674404 18675104 -83198065 + L1MB8 LINE L1 5464 6178 0 22 0 0 0 chr13 18675235 18675257 -83197912 + AT_rich Low_complexity Low_complexity 1 22 0 350 236 11 22 chr13 18675510 18675599 -83197570 - MER5B DNA MER1_type -4 174 87 5434 162 15 18 chr13 18675794 18676168 -83197001 - L1PA16 LINE L1 -5 6161 5787 1995 147 8 54 chr13 18676168 18676521 -83196648 + MER1B DNA MER1_type 1 337 0 5434 162 15 18 chr13 18676521 18677250 -83195919 - L1PA16 LINE L1 -379 5787 5057 1938 169 3 3 chr13 18677250 18677546 -83195623 + AluJb SINE Alu 1 296 -16 5434 162 15 18 chr13 18677546 18678508 -83194661 - L1PA16 LINE L1 -1109 5057 4106 23 0 0 0 chr13 18679010 18679033 -83194136 + AT_rich Low_complexity Low_complexity 1 23 0 430 372 7 0 chr13 18679376 18679521 -83193648 + L3 LINE CR1 1428 1573 -4 254 236 171 0 chr13 18679683 18679806 -83193363 - L1MEc LINE L1 -4873 1240 1097 827 302 165 19 chr13 18679832 18680697 -83192472 - L1MEc LINE L1 -5367 1029 38 21 36 0 0 chr13 18680722 18680750 -83192419 + AT_rich Low_complexity Low_complexity 1 28 0 256 235 29 29 chr13 18680936 18681004 -83192165 + MLT1J2 LTR MaLR 1 68 -382 867 285 11 73 chr13 18681188 18681557 -83191612 + MLT1J2 LTR MaLR 87 432 -18 2549 89 3 21 chr13 18682729 18683109 -83190060 - THE1C LTR MaLR -2 373 1 22 35 0 0 chr13 18683601 18683630 -83189539 + AT_rich Low_complexity Low_complexity 1 29 0 1306 156 141 34 chr13 18683641 18683910 -83189259 - AluJo SINE Alu -4 298 1 2136 160 20 0 chr13 18684605 18684962 -83188207 - MLT1A1 LTR MaLR -1 364 1 1067 168 41 0 chr13 18685868 18686065 -83187104 - MER20 DNA MER1_type -1 218 14 207 0 0 0 chr13 18686115 18686138 -83187031 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1282 184 61 11 chr13 18686142 18686403 -83186766 - AluJb SINE Alu -30 282 9 234 0 0 0 chr13 18686414 18686440 -83186729 + (T)n Simple_repeat Simple_repeat 1 26 0 2230 87 3 10 chr13 18687366 18687666 -83185503 - AluSx SINE Alu -14 298 1 316 283 91 118 chr13 18688051 18688525 -83184644 + L1M2 LINE L1 530 990 -5859 246 226 118 11 chr13 18689973 18690066 -83183103 + L1ME4a LINE L1 5973 6075 -46 618 234 8 0 chr13 18691270 18691394 -83181775 + L2 LINE L2 3188 3312 -1 517 214 10 0 chr13 18691484 18691587 -83181582 - MER94 DNA DNA -25 109 6 291 248 114 0 chr13 18692170 18692275 -83180894 + L1MC4 LINE L1 7556 7672 -370 2054 164 19 6 chr13 18693046 18693406 -83179763 + MLT1A1 LTR MaLR 1 365 0 387 296 166 49 chr13 18693512 18694090 -83179079 + HAL1 LINE L1 1088 1774 -733 2169 164 179 149 chr13 18694317 18694643 -83178526 + L1MD3 LINE L1 6941 7256 -739 516 219 16 0 chr13 18694643 18694766 -83178403 + MLT1F1 LTR MaLR 1 125 -442 2169 164 179 149 chr13 18694766 18695330 -83177839 + L1MD3 LINE L1 7256 7983 -12 25 31 0 0 chr13 18695869 18695901 -83177268 + AT_rich Low_complexity Low_complexity 1 32 0 288 287 77 58 chr13 18695973 18696454 -83176715 + L1ME LINE L1 2518 3007 -3139 833 197 72 10 chr13 18696467 18696660 -83176509 + MER3 DNA MER1_type 5 209 0 31 44 0 0 chr13 18696749 18696794 -83176375 + AT_rich Low_complexity Low_complexity 1 45 0 733 318 77 39 chr13 18697027 18698361 -83174808 + L1ME LINE L1 3641 5043 -1103 2394 91 10 0 chr13 18698506 18698815 -83174354 + AluSx SINE Alu 1 312 0 334 262 87 52 chr13 18698854 18699026 -83174143 + L1ME LINE L1 5254 5431 -743 247 313 0 0 chr13 18699072 18699152 -83174017 + L1ME LINE L1 5485 5564 -557 1655 168 25 14 chr13 18700999 18701279 -83171890 + AluJo SINE Alu 13 295 -17 2392 101 0 0 chr13 18701680 18701988 -83171181 - AluSg SINE Alu -2 308 1 358 268 132 34 chr13 18702532 18702731 -83170438 - MIR SINE MIR -35 227 19 195 69 0 0 chr13 18703425 18703454 -83169715 + (TG)n Simple_repeat Simple_repeat 2 30 0 1924 164 3 3 chr13 18706328 18706626 -83166543 + AluJb SINE Alu 1 298 -14 303 71 0 0 chr13 18706627 18706669 -83166500 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 530 302 48 85 chr13 18707077 18707767 -83165402 + L2 LINE L2 2592 3255 -17 28 48 0 0 chr13 18707774 18707816 -83165353 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 18707891 18707912 -83165257 + AT_rich Low_complexity Low_complexity 1 21 0 611 293 61 10 chr13 18708142 18708436 -83164733 - L1MC5 LINE L1 -44 7917 7609 23 0 0 0 chr13 18708514 18708537 -83164632 + AT_rich Low_complexity Low_complexity 1 23 0 1685 135 24 3 chr13 18709833 18710129 -83163040 + L1MA9 LINE L1 6011 6312 0 183 244 67 0 chr13 18710338 18710383 -83162786 - L3b LINE CR1 -255 1328 1281 487 305 48 29 chr13 18711015 18711225 -83161944 + L3 LINE CR1 1266 1479 -98 851 333 138 43 chr13 18712958 18714310 -83158859 - L2 LINE L2 -6 3266 1789 1809 231 83 4 chr13 18714416 18714909 -83158260 - MLT1H1 LTR MaLR 0 555 24 3698 215 140 48 chr13 18716361 18717259 -83155910 - L1MEc LINE L1 -2049 4166 3352 2258 100 0 0 chr13 18717259 18717567 -83155602 - AluSg SINE Alu 0 308 1 3698 215 140 48 chr13 18717567 18717599 -83155570 - L1MEc LINE L1 -2863 3352 3324 2947 67 0 5 chr13 18717599 18717985 -83155184 + L1PA8 LINE L1 5772 6155 -17 3698 215 140 48 chr13 18717985 18717999 -83155170 - L1MEc LINE L1 -2891 3324 3313 2466 51 10 0 chr13 18717999 18718293 -83154876 + AluY SINE Alu 4 300 -11 3698 215 140 48 chr13 18718293 18719464 -83153705 - L1MEc LINE L1 -2902 3313 1897 2531 136 41 7 chr13 18719464 18719876 -83153293 - MSTB LTR MaLR 0 426 1 3698 215 140 48 chr13 18719876 18719915 -83153254 - L1MEc LINE L1 -4318 1897 1863 1245 273 83 27 chr13 18719926 18720442 -83152727 - MLT1H1 LTR MaLR -4 551 7 734 276 89 39 chr13 18720839 18721403 -83151766 + L1ME2 LINE L1 1926 2512 -4028 5191 257 60 40 chr13 18721418 18722202 -83150967 + L1ME2 LINE L1 2597 3364 -3194 543 106 59 0 chr13 18722202 18722287 -83150882 + L1PA10 LINE L1 6078 6167 -1 5191 257 60 40 chr13 18722287 18723041 -83150128 + L1ME2 LINE L1 3364 4101 -2457 1882 163 0 14 chr13 18723041 18723336 -83149833 + AluSx SINE Alu 1 291 -21 5191 257 60 40 chr13 18723336 18724526 -83148643 + L1ME2 LINE L1 4101 5266 -1292 719 221 34 25 chr13 18724526 18724730 -83148439 + MER3 DNA MER1_type 4 209 0 5191 257 60 40 chr13 18724730 18725827 -83147342 + L1ME2 LINE L1 5266 6524 -34 304 257 42 108 chr13 18725870 18725986 -83147183 + L1MC4 LINE L1 7835 7932 -110 1456 150 144 0 chr13 18725986 18726299 -83146870 + MER46B DNA MER2_type 4 236 0 304 257 42 108 chr13 18726299 18726396 -83146773 + L1MC4 LINE L1 7932 8034 -8 340 186 167 0 chr13 18726458 18726560 -83146609 - L1ME4a LINE L1 -38 6083 5965 256 318 0 0 chr13 18726808 18726893 -83146276 - L1ME LINE L1 -464 5657 5573 295 156 65 0 chr13 18727055 18727125 -83146044 - MIR SINE MIR -84 124 50 744 232 209 27 chr13 18729402 18729665 -83143504 + L2 LINE L2 2999 3309 -4 266 344 86 0 chr13 18730065 18730158 -83143011 - L2 LINE L2 -62 3210 3110 205 161 0 0 chr13 18730359 18730390 -83142779 + polypurine Low_complexity Low_complexity 5 35 0 234 322 51 42 chr13 18731274 18731392 -83141777 - MIR3 SINE MIR -75 133 15 430 312 57 92 chr13 18732684 18733033 -83140136 - L2 LINE L2 -5 3267 2931 270 299 22 60 chr13 18733148 18733282 -83139887 - MIR SINE MIR 0 262 134 23 54 0 0 chr13 18733518 18733555 -83139614 + AT_rich Low_complexity Low_complexity 1 37 0 388 336 62 55 chr13 18735415 18735689 -83137480 - L2 LINE L2 -814 2500 2225 331 272 0 33 chr13 18736201 18736293 -83136876 - MER5A DNA MER1_type -38 151 63 225 302 31 21 chr13 18736409 18736505 -83136664 - MER5A DNA MER1_type 0 189 93 * 356 361 41 24 chr13 18736412 18736581 -83136588 + MER5A DNA MER1_type 18 189 0 24 0 0 0 chr13 18737261 18737285 -83135884 + AT_rich Low_complexity Low_complexity 1 24 0 385 295 80 40 chr13 18739420 18739640 -83133529 + MIR SINE MIR 1 235 -27 458 274 101 62 chr13 18739814 18740171 -83132998 - L2 LINE L2 -2117 1197 827 310 281 157 13 chr13 18740698 18740851 -83132318 + L1MC/D LINE L1 5443 5617 -2191 180 0 0 0 chr13 18741121 18741141 -83132028 + (A)n Simple_repeat Simple_repeat 1 20 0 2190 94 0 7 chr13 18741257 18741564 -83131605 + AluY SINE Alu 1 305 0 315 290 30 0 chr13 18741611 18741780 -83131389 + L1M4 LINE L1 5224 5397 -749 310 265 232 6 chr13 18742151 18742332 -83130837 + L2 LINE L2 88 309 -3005 873 290 9 31 chr13 18742332 18742653 -83130516 + L2 LINE L2 1522 1835 -1479 564 240 49 44 chr13 18742682 18742886 -83130283 - L1ME3A LINE L1 -31 6139 5935 1053 112 13 0 chr13 18742903 18743146 -83130023 - AluSp/q SINE Alu 0 404 160 578 243 50 55 chr13 18743243 18743424 -83129745 - L2 LINE L2 -527 2787 2608 515 206 142 0 chr13 18744413 18744554 -83128615 + L2 LINE L2 1756 1916 -1398 533 270 56 33 chr13 18744671 18744911 -83128258 + MIR SINE MIR 5 262 0 270 81 0 0 chr13 18745372 18745409 -83127760 + (T)n Simple_repeat Simple_repeat 1 37 0 1620 264 92 25 chr13 18746173 18746793 -83126376 + L2 LINE L2 2341 3002 -311 1520 157 7 47 chr13 18748171 18748445 -83124724 - AluJb SINE Alu -11 301 39 280 315 26 32 chr13 18749184 18749307 -83123862 + MIR SINE MIR 46 167 -91 1618 186 17 10 chr13 18749307 18749603 -83123566 + AluJo SINE Alu 2 299 -13 280 315 26 32 chr13 18749603 18749639 -83123530 + MIR SINE MIR 167 202 -56 342 0 0 0 chr13 18749676 18749714 -83123455 + (TG)n Simple_repeat Simple_repeat 2 39 0 595 316 46 14 chr13 18749731 18749949 -83123220 + MIR SINE MIR 12 236 -26 2473 103 31 14 chr13 18750406 18750764 -83122405 - THE1B LTR MaLR 0 364 1 1115 231 172 9 chr13 18750944 18751281 -83121888 - MLT1H LTR MaLR -146 403 12 328 237 80 91 chr13 18751290 18751577 -83121592 - L1ME3A LINE L1 -2216 5592 5309 6134 131 7 6 chr13 18751681 18753154 -83120015 - L1PB1 LINE L1 -2 6149 4677 359 271 48 32 chr13 18753317 18753595 -83119574 - L1ME3A LINE L1 -1109 5037 4757 338 289 0 0 chr13 18754104 18754180 -83118989 - L2 LINE L2 0 3272 3197 256 234 0 0 chr13 18754206 18754253 -83118916 - MIR SINE MIR -102 160 114 326 291 76 51 chr13 18755749 18755907 -83117262 + MIR SINE MIR 67 228 -34 191 317 17 17 chr13 18756091 18756151 -83117018 + MIR SINE MIR 20 79 -183 448 346 16 5 chr13 18756482 18756667 -83116502 + LTR16C LTR ERVL 300 486 -5 238 385 55 0 chr13 18756680 18756771 -83116398 - L2 LINE L2 -49 3223 3128 799 326 7 15 chr13 18756897 18757308 -83115861 - L1ME3A LINE L1 -293 5860 5453 2233 289 103 26 chr13 18757347 18759512 -83113657 - L1ME3A LINE L1 -671 5474 3141 933 212 151 84 chr13 18759529 18759934 -83113235 - MLT1E1 LTR MaLR -2 652 221 235 344 11 0 chr13 18759922 18760015 -83113154 - MLT1E1 LTR MaLR -558 96 3 * 2301 95 3 7 chr13 18760067 18760373 -83112796 - AluY SINE Alu -6 305 1 381 272 52 42 chr13 18760412 18760603 -83112566 - L1ME3A LINE L1 -3204 2925 2733 380 272 22 37 chr13 18760596 18760732 -83112437 - L1ME3A LINE L1 -3616 2513 2380 * 227 304 36 24 chr13 18760791 18761044 -83112125 - L1ME3A LINE L1 -3997 2313 2058 264 336 7 7 chr13 18761164 18761310 -83111859 - L1ME3A LINE L1 -4688 1443 1298 2874 229 8 2 chr13 18761327 18761957 -83111212 + MER82 DNA MER2_type 11 644 -9 26 30 0 0 chr13 18762042 18762075 -83111094 + AT_rich Low_complexity Low_complexity 1 33 0 459 244 52 92 chr13 18762087 18762611 -83110558 - L1ME3A LINE L1 -4885 1234 732 237 340 19 19 chr13 18762832 18762938 -83110231 - L1ME3A LINE L1 -5578 541 436 337 294 141 54 chr13 18763506 18764152 -83109017 - L1MC4a LINE L1 -1844 5964 5263 2736 220 85 7 chr13 18764250 18765342 -83107827 - L1ME1 LINE L1 -4 6162 4980 21 0 0 0 chr13 18765560 18765581 -83107588 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 18765807 18765835 -83107334 + AT_rich Low_complexity Low_complexity 1 28 0 27 81 0 0 chr13 18765850 18765912 -83107257 + AT_rich Low_complexity Low_complexity 1 62 0 1875 177 0 3 chr13 18765961 18766260 -83106909 + AluJb SINE Alu 1 298 -14 560 276 136 42 chr13 18766512 18767026 -83106143 + L2 LINE L2 2708 3272 0 857 332 163 27 chr13 18767214 18767983 -83105186 + L3 LINE CR1 579 1451 -126 268 263 141 0 chr13 18768269 18768368 -83104801 + L3 LINE CR1 1463 1575 -2 650 278 47 16 chr13 18769116 18769307 -83103862 + MIR SINE MIR 54 250 -12 180 0 0 0 chr13 18771291 18771311 -83101858 + (GGA)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr13 18771358 18771381 -83101788 + (CCG)n Simple_repeat Simple_repeat 2 24 0 456 250 191 69 chr13 18771440 18771844 -83101325 + L1M2 LINE L1 566 1018 -5831 184 300 0 17 chr13 18774233 18774293 -83098876 - MIR SINE MIR -86 122 64 358 296 129 60 chr13 18774338 18774571 -83098598 + MIR SINE MIR 8 256 -6 555 317 11 28 chr13 18775137 18775317 -83097852 - MIR SINE MIR -21 241 65 254 213 16 16 chr13 18775405 18775466 -83097703 + CT-rich Low_complexity Low_complexity 3 63 0 299 331 71 32 chr13 18775771 18775925 -83097244 + MIR SINE MIR 20 179 -83 743 164 14 100 chr13 18776205 18776537 -83096632 + AluJo SINE Alu 28 310 -2 447 300 50 39 chr13 18777378 18777558 -83095611 - MIR3 SINE MIR -8 200 19 867 268 60 0 chr13 18778958 18779193 -83093976 - MIR SINE MIR 0 262 14 236 275 0 14 chr13 18779897 18779966 -83093203 + (TATG)n Simple_repeat Simple_repeat 2 69 0 24 53 0 0 chr13 18780689 18780727 -83092442 + AT_rich Low_complexity Low_complexity 1 38 0 767 154 0 0 chr13 18780814 18780931 -83092238 - FLAM_C SINE Alu -16 117 1 1359 118 32 112 chr13 18780987 18781300 -83091869 - Tigger7 DNA MER2_type 0 2587 2300 798 171 0 14 chr13 18781299 18781445 -83091724 - Tigger7 DNA MER2_type -265 74 27 * 1256 300 41 18 chr13 18781460 18782117 -83091052 - L1MC4a LINE L1 -1882 5926 5255 1927 106 14 0 chr13 18782143 18782425 -83090744 - MER7A DNA MER2_type 0 346 63 2313 224 107 6 chr13 18782745 18783425 -83089744 - L1MC4a LINE L1 -4 7804 7056 1730 171 79 6 chr13 18783689 18784029 -83089140 + MLT1A1 LTR MaLR 1 365 0 342 336 81 41 chr13 18784057 18784589 -83088580 + L2 LINE L2 2170 2722 -592 21 0 0 0 chr13 18784724 18784745 -83088424 + AT_rich Low_complexity Low_complexity 1 21 0 2215 127 0 9 chr13 18786505 18786820 -83086349 + AluSx SINE Alu 1 312 0 207 69 0 0 chr13 18787397 18787426 -83085743 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 948 181 0 50 chr13 18787553 18787735 -83085434 - AluJb SINE Alu -3 309 137 278 319 120 0 chr13 18789008 18789135 -83084034 - MIR SINE MIR -67 141 43 21 36 0 0 chr13 18790498 18790526 -83082643 + AT_rich Low_complexity Low_complexity 1 28 0 2509 52 0 13 chr13 18791621 18791927 -83081242 + AluY SINE Alu 1 302 -9 317 318 69 29 chr13 18792980 18793153 -83080016 + MIR SINE MIR 38 217 -45 647 216 199 6 chr13 18793176 18793357 -83079812 - MIR SINE MIR -40 222 7 669 35 0 0 chr13 18795334 18795419 -83077750 + AluY SINE Alu 224 308 -4 347 225 25 92 chr13 18797259 18797379 -83075790 + MIR SINE MIR 118 229 -33 633 294 51 47 chr13 18797559 18797794 -83075375 + MIR SINE MIR 20 255 -7 260 356 30 69 chr13 18798204 18798437 -83074732 + L2 LINE L2 2996 3219 -53 2218 115 0 13 chr13 18799324 18799636 -83073533 - AluSx SINE Alu -4 308 1 186 43 0 0 chr13 18799665 18799688 -83073481 + (CAA)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr13 18800478 18800510 -83072659 + AT_rich Low_complexity Low_complexity 1 32 0 2124 117 3 22 chr13 18800712 18801028 -83072141 + AluSx SINE Alu 1 310 -2 284 220 33 0 chr13 18801038 18801129 -83072040 + MER5A DNA MER1_type 13 106 -83 1254 185 21 110 chr13 18802359 18802694 -83070475 - AluYb8 SINE Alu -13 305 1 2389 71 7 0 chr13 18803488 18803783 -83069386 + AluSq SINE Alu 2 298 -15 422 272 144 15 chr13 18804636 18804831 -83068338 - MIR SINE MIR 0 262 43 21 0 0 0 chr13 18805214 18805235 -83067934 + AT_rich Low_complexity Low_complexity 1 21 0 611 261 46 0 chr13 18805367 18805562 -83067607 - L1ME1 LINE L1 -5 6161 5958 22 35 0 0 chr13 18806757 18806786 -83066383 + AT_rich Low_complexity Low_complexity 1 29 0 1953 149 3 3 chr13 18807249 18807585 -83065584 + AluSx SINE Alu 1 336 0 582 184 0 9 chr13 18808712 18808821 -83064348 + FLAM_A SINE Alu 12 119 -23 27 0 0 0 chr13 18808966 18808993 -83064176 + AT_rich Low_complexity Low_complexity 1 27 0 224 282 0 42 chr13 18809167 18809238 -83063931 + L2 LINE L2 3205 3272 0 2796 16 0 0 chr13 18809969 18810276 -83062893 + AluYa5 SINE Alu 1 307 -4 21 36 0 0 chr13 18810323 18810351 -83062818 + AT_rich Low_complexity Low_complexity 1 28 0 748 234 22 22 chr13 18810353 18810537 -83062632 - MIR SINE MIR -1 261 78 25 31 0 0 chr13 18810696 18810728 -83062441 + AT_rich Low_complexity Low_complexity 1 32 0 1011 37 7 22 chr13 18811374 18811509 -83061660 - L1PA8 LINE L1 0 6172 6040 1809 84 14 0 chr13 18811510 18811785 -83061384 + L1PA8 LINE L1 5096 5374 -772 183 80 0 0 chr13 18811883 18811908 -83061261 + (GGGTG)n Simple_repeat Simple_repeat 3 27 0 6492 52 11 7 chr13 18815472 18816302 -83056867 + L1PA8 LINE L1 5340 6172 0 23 0 0 0 chr13 18816690 18816713 -83056456 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 18817634 18817660 -83055509 + AT_rich Low_complexity Low_complexity 1 26 0 233 214 0 36 chr13 18818981 18819037 -83054132 + L2 LINE L2 3251 3304 -9 2448 121 70 16 chr13 18820228 18820657 -83052512 - Tigger2 DNA MER2_type 0 2718 2267 445 123 0 0 chr13 18820643 18820708 -83052461 - Tigger2 DNA MER2_type -2651 67 3 * 23 54 0 0 chr13 18821550 18821587 -83051582 + AT_rich Low_complexity Low_complexity 1 37 0 1048 155 26 58 chr13 18821711 18821937 -83051232 - MER20 DNA MER1_type 0 219 1 779 264 62 7 chr13 18822599 18822887 -83050282 + MER46C DNA MER2_type 22 325 -13 2143 115 0 7 chr13 18823111 18823406 -83049763 - AluSq SINE Alu -19 294 2 314 317 48 36 chr13 18824259 18824426 -83048743 + L3 LINE CR1 520 688 -889 1650 193 74 20 chr13 18824426 18824779 -83048390 - MLT1A2 LTR MaLR 0 374 3 251 371 73 8 chr13 18825184 18825308 -83047861 + L2 LINE L2 3121 3252 -20 199 315 14 82 chr13 18825323 18825469 -83047700 + L3 LINE CR1 1084 1219 -358 214 246 312 14 chr13 18825548 18825686 -83047483 + MIR SINE MIR 72 250 -12 191 114 29 0 chr13 18825719 18825754 -83047415 + CT-rich Low_complexity Low_complexity 2 37 0 375 339 0 0 chr13 18825900 18826009 -83047160 + L3 LINE CR1 1236 1344 -233 2020 117 0 27 chr13 18826722 18827020 -83046149 - AluSx SINE Alu -22 290 1 205 320 40 0 chr13 18827093 18827168 -83046001 - MIR SINE MIR -113 149 72 2049 43 122 4 chr13 18828256 18828534 -83044635 - AluY SINE Alu 0 311 1 336 311 89 0 chr13 18829300 18829435 -83043734 + MIR SINE MIR 103 249 -13 992 208 50 0 chr13 18829446 18829686 -83043483 + L1MB7 LINE L1 5933 6184 0 217 265 44 15 chr13 18830058 18830126 -83043043 - L2 LINE L2 0 3313 3244 * 1647 279 113 10 chr13 18830114 18830724 -83042445 - L2 LINE L2 -933 2381 1709 608 324 40 14 chr13 18830937 18831159 -83042010 + MIR SINE MIR 2 229 -33 377 299 170 10 chr13 18831224 18831418 -83041751 + MIR SINE MIR 6 230 -32 21 0 0 0 chr13 18831422 18831443 -83041726 + AT_rich Low_complexity Low_complexity 1 21 0 2332 81 0 28 chr13 18831810 18832132 -83041037 + AluSq SINE Alu 1 313 0 207 284 75 0 chr13 18833627 18833694 -83039475 + MIR SINE MIR 118 189 -73 198 0 0 0 chr13 18835161 18835183 -83037986 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 7790 19 0 4 chr13 18835186 18836183 -83036986 - L1PA3 LINE L1 -3 6152 5157 245 277 78 42 chr13 18836489 18836655 -83036514 + MIR SINE MIR 47 218 -44 755 222 113 5 chr13 18837406 18837600 -83035569 - MIR SINE MIR 0 262 48 2273 98 0 7 chr13 18838075 18838372 -83034797 - AluSc SINE Alu -10 299 5 294 314 0 0 chr13 18838863 18838949 -83034220 - L2 LINE L2 0 3313 3228 184 242 0 0 chr13 18839811 18839844 -83033325 + L3 LINE CR1 674 706 -871 190 285 271 0 chr13 18840107 18840251 -83032918 - MIR SINE MIR -29 233 51 220 278 56 0 chr13 18840345 18840417 -83032752 - L2 LINE L2 -51 3262 3187 2335 99 3 0 chr13 18842584 18842886 -83030283 + AluSq SINE Alu 1 303 -10 243 61 0 0 chr13 18845579 18845612 -83027557 + (CAT)n Simple_repeat Simple_repeat 3 35 0 21 0 0 0 chr13 18845639 18845660 -83027509 + AT_rich Low_complexity Low_complexity 1 21 0 225 154 0 0 chr13 18845808 18845847 -83027322 + (TA)n Simple_repeat Simple_repeat 1 39 0 1180 72 13 0 chr13 18845847 18845999 -83027170 - AluY SINE Alu -16 295 142 213 246 15 15 chr13 18846003 18846068 -83027101 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 6083 6 0 3 chr13 18846123 18846808 -83026361 - L1PA2 LINE L1 0 6155 5473 438 0 0 0 chr13 18846808 18846858 -83026311 + L1PA2 LINE L1 5427 5476 -679 24 67 0 0 chr13 18846863 18846908 -83026261 + AT_rich Low_complexity Low_complexity 1 45 0 531 220 113 28 chr13 18848035 18848212 -83024957 + L2 LINE L2 2994 3185 -128 1639 270 105 0 chr13 18848298 18848757 -83024412 - LTR40a LTR ERVL -10 509 3 531 267 38 129 chr13 18848931 18849302 -83023867 + L2 LINE L2 2967 3303 -10 330 320 105 0 chr13 18849421 18849574 -83023595 + L2 LINE L2 3096 3264 -8 288 327 77 39 chr13 18849679 18849887 -83023282 + L3 LINE CR1 1311 1526 -51 221 375 111 14 chr13 18850114 18850258 -83022911 + L2 LINE L2 3115 3272 0 527 248 33 79 chr13 18852652 18852866 -83020303 - MER63A DNA MER1_type -6 204 1 275 304 98 20 chr13 18854001 18854103 -83019066 - MIR3 SINE MIR -93 115 6 1026 140 21 16 chr13 18854589 18854782 -83018387 - L1MA8 LINE L1 0 6291 6098 1004 110 7 19 chr13 18854790 18854945 -83018224 - FRAM SINE Alu -23 153 1 4975 117 19 21 chr13 18854947 18855793 -83017376 - L1MA8 LINE L1 -175 6116 5273 180 222 79 16 chr13 18856821 18856884 -83016285 - L2 LINE L2 -1 3271 3205 1975 147 0 3 chr13 18856886 18857185 -83015984 - AluSx SINE Alu -14 298 1 198 0 0 0 chr13 18857377 18857399 -83015770 + (TA)n Simple_repeat Simple_repeat 2 23 0 357 196 10 82 chr13 18857399 18857496 -83015673 - L1MC4 LINE L1 -1339 6703 6614 245 267 57 19 chr13 18857544 18857649 -83015520 + L1MC4 LINE L1 7924 8032 -10 406 231 101 53 chr13 18857758 18857966 -83015203 - HAL1 LINE L1 0 2507 2290 1274 276 123 45 chr13 18858074 18858412 -83014757 - HAL1 LINE L1 -394 2113 1803 1975 170 88 5 chr13 18858412 18858811 -83014358 - MSTB1 LTR MaLR 0 432 1 1274 276 123 45 chr13 18858811 18859541 -83013628 - HAL1 LINE L1 -704 1803 962 5277 142 102 119 chr13 18861180 18862047 -83011122 + L1MC3 LINE L1 6194 7120 -665 257 326 0 11 chr13 18862047 18862139 -83011030 + MLT1F1 LTR MaLR 35 125 -442 5277 142 102 119 chr13 18862139 18862668 -83010501 + L1MC3 LINE L1 7120 7656 -129 473 174 0 0 chr13 18862652 18862738 -83010431 - L1 LINE L1 -1062 5084 4999 * 726 130 9 0 chr13 18862740 18862848 -83010321 + FRAM SINE Alu 54 162 -14 218 171 0 0 chr13 18863117 18863152 -83010017 + (TG)n Simple_repeat Simple_repeat 1 35 0 444 282 53 73 chr13 18863858 18864064 -83009105 + MIR SINE MIR 13 214 -48 272 315 18 36 chr13 18864587 18864698 -83008471 + MIR3 SINE MIR 97 205 -3 3659 135 33 61 chr13 18864915 18864995 -83008174 - L1MA4 LINE L1 0 6300 6219 2229 103 0 0 chr13 18864995 18865301 -83007868 + AluSx SINE Alu 1 306 0 3659 135 33 61 chr13 18865301 18865954 -83007215 - L1MA4 LINE L1 -81 6219 5587 2333 155 41 56 chr13 18866325 18866810 -83006359 - MER66A LTR ERV1 0 478 1 970 147 6 6 chr13 18867077 18867234 -83005935 + FRAM SINE Alu 1 156 -20 270 281 12 0 chr13 18867525 18867607 -83005562 + GA-rich Low_complexity Low_complexity 2 84 0 434 211 100 0 chr13 18868005 18868095 -83005074 - MER63 DNA MER1_type -311 751 27 21 71 0 0 chr13 18868449 18868491 -83004678 + AT_rich Low_complexity Low_complexity 1 42 0 2139 96 4 0 chr13 18868862 18869133 -83004036 - AluSp SINE Alu -38 275 4 247 344 158 9 chr13 18869134 18869355 -83003814 - MIR SINE MIR -7 255 2 2385 89 0 6 chr13 18870336 18870650 -83002519 + AluSx SINE Alu 1 312 0 239 286 14 0 chr13 18871281 18871351 -83001818 + (TA)n Simple_repeat Simple_repeat 1 71 0 627 266 91 24 chr13 18871445 18871697 -83001472 + MARNA DNA Mariner 164 432 -154 2205 105 0 26 chr13 18872172 18872476 -83000693 + AluSq SINE Alu 1 296 -17 411 256 113 34 chr13 18872743 18872934 -83000235 + MIR SINE MIR 45 244 -18 260 298 158 93 chr13 18873315 18873590 -82999579 - L2 LINE L2 -4 3268 2955 3943 127 46 0 chr13 18873590 18874197 -82998972 - MER41B LTR ERV1 0 635 1 260 298 158 93 chr13 18874197 18874340 -82998829 - L2 LINE L2 -317 2955 2823 1709 153 14 4 chr13 18874747 18875051 -82998118 + AluJb SINE Alu 1 307 0 1985 138 49 18 chr13 18875332 18875659 -82997510 + MER1B DNA MER1_type 1 337 0 22 80 0 0 chr13 18875763 18875813 -82997356 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr13 18876942 18876966 -82996203 + AT_rich Low_complexity Low_complexity 1 24 0 1338 199 3 31 chr13 18877086 18877403 -82995766 - L1MB7 LINE L1 -237 6445 6138 * 4498 200 16 40 chr13 18877402 18877509 -82995660 - L1MB7 LINE L1 -1194 5450 5342 2406 109 0 0 chr13 18877509 18877822 -82995347 + AluSp SINE Alu 1 313 0 4498 200 16 40 chr13 18877822 18878583 -82994586 - L1MB7 LINE L1 -1302 5342 4616 2247 88 26 0 chr13 18878583 18878888 -82994281 + AluSq SINE Alu 1 313 0 4498 200 16 40 chr13 18878888 18879183 -82993986 - L1MB7 LINE L1 -2028 4616 4315 781 241 82 124 chr13 18879192 18879682 -82993487 + MLT2B1 LTR ERVL 86 554 0 5305 250 39 34 chr13 18879683 18882116 -82991053 - L1MB7 LINE L1 -2310 4334 1936 490 185 11 35 chr13 18882115 18882239 -82990930 - L1MB7 LINE L1 -5028 1514 1413 * 806 217 59 10 chr13 18882231 18882434 -82990735 - L1MB7 LINE L1 -6303 239 27 2018 183 58 22 chr13 18882514 18882929 -82990240 - MSTB1 LTR MaLR -2 430 1 330 320 105 0 chr13 18883525 18883678 -82989491 - L2 LINE L2 -8 3264 3096 467 303 8 8 chr13 18883797 18883929 -82989240 - L2 LINE L2 -10 3303 3172 222 123 27 68 chr13 18883948 18884021 -82989148 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 25 0 0 0 chr13 18884999 18885024 -82988145 + AT_rich Low_complexity Low_complexity 1 25 0 1210 163 97 10 chr13 18886742 18887030 -82986139 + MER33 DNA MER1_type 2 314 -10 212 250 18 0 chr13 18888138 18888194 -82984975 - MIR3 SINE MIR -2 206 150 22 0 0 0 chr13 18888216 18888238 -82984931 + AT_rich Low_complexity Low_complexity 1 22 0 305 259 148 0 chr13 18888559 18888640 -82984529 - L2 LINE L2 -19 3253 3161 396 59 0 0 chr13 18888678 18888729 -82984440 + (GA)n Simple_repeat Simple_repeat 2 52 0 43564 32 24 2 chr13 18889470 18895505 -82977664 + L1PA2 LINE L1 1 6175 0 207 209 0 0 chr13 18895524 18895567 -82977602 + A-rich Low_complexity Low_complexity 1 43 0 195 308 26 0 chr13 18896842 18896920 -82976249 - MIR SINE MIR -104 158 79 3588 69 0 0 chr13 18897518 18897980 -82975189 - L1PA8 LINE L1 -7 6165 5704 1889 118 65 7 chr13 18898829 18899137 -82974032 + AluJb SINE Alu 1 312 0 541 197 51 8 chr13 18899260 18899377 -82973792 - L2 LINE L2 -1 3312 3191 396 245 177 55 chr13 18899796 18900339 -82972830 - L1ME4a LINE L1 -5 6116 5508 183 129 0 0 chr13 18900379 18900410 -82972759 + (CA)n Simple_repeat Simple_repeat 1 31 0 419 254 16 16 chr13 18902163 18902289 -82970880 - MIR3 SINE MIR 0 208 83 2230 118 3 0 chr13 18902459 18902756 -82970413 + AluSp SINE Alu 1 298 -15 194 289 0 0 chr13 18902847 18902899 -82970270 - L2 LINE L2 0 3313 3262 34 55 0 0 chr13 18903144 18903199 -82969970 + AT_rich Low_complexity Low_complexity 1 55 0 2207 124 0 0 chr13 18904436 18904734 -82968435 - AluSx SINE Alu -14 298 1 264 214 0 60 chr13 18904925 18905009 -82968160 - L1MC5 LINE L1 -212 7749 7671 22 35 0 0 chr13 18905406 18905435 -82967734 + AT_rich Low_complexity Low_complexity 1 29 0 1770 188 59 37 chr13 18906942 18907347 -82965822 - MLT2D LTR ERVL 0 414 1 1908 126 47 20 chr13 18907478 18907779 -82965390 + AluSq SINE Alu 1 309 -4 296 198 39 110 chr13 18910037 18910182 -82962987 - MIR SINE MIR -61 147 59 360 274 65 24 chr13 18910911 18911035 -82962134 + MER94 DNA DNA 1 129 -5 21 0 0 0 chr13 18911694 18911715 -82961454 + AT_rich Low_complexity Low_complexity 1 21 0 1257 198 53 76 chr13 18911916 18912035 -82961134 - MER39 LTR ERV1 -4 703 583 1724 173 10 10 chr13 18912035 18912324 -82960845 - AluJb SINE Alu -23 289 1 1257 198 53 76 chr13 18912324 18912598 -82960571 - MER39 LTR ERV1 -124 583 319 318 308 10 0 chr13 18912588 18912692 -82960477 - LTR48B LTR ERV1 -539 105 1 * 24 0 0 0 chr13 18913780 18913804 -82959365 + AT_rich Low_complexity Low_complexity 1 24 0 1247 177 12 49 chr13 18913853 18914096 -82959073 + AluJo SINE Alu 2 235 -77 2299 96 0 0 chr13 18914150 18914441 -82958728 + AluSq SINE Alu 19 309 -4 761 107 16 8 chr13 18916077 18916198 -82956971 - L1MA2 LINE L1 0 6304 6183 1507 110 5 14 chr13 18916355 18916564 -82956605 - AluSx SINE Alu -105 207 1 2432 98 3 0 chr13 18917375 18917682 -82955487 - AluSg SINE Alu -2 308 1 243 0 0 0 chr13 18918779 18918806 -82954363 + (TG)n Simple_repeat Simple_repeat 1 27 0 1715 88 8 0 chr13 18919946 18920184 -82952985 - L1MA1 LINE L1 -4 6298 6059 809 185 0 0 chr13 18920425 18920560 -82952609 + FRAM SINE Alu 12 146 -30 180 0 0 0 chr13 18920563 18920583 -82952586 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2020 145 7 7 chr13 18920640 18920943 -82952226 + AluSx SINE Alu 1 303 -9 351 113 0 0 chr13 18921219 18921272 -82951897 + (TCCC)n Simple_repeat Simple_repeat 3 55 0 198 0 0 0 chr13 18921276 18921298 -82951871 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 856 161 13 20 chr13 18921301 18921450 -82951719 - FRAM SINE Alu -28 148 1 3130 116 8 47 chr13 18921672 18922061 -82951108 + L1MB3 LINE L1 5436 5800 -383 1733 144 45 6 chr13 18922061 18922360 -82950809 + L1MC1 LINE L1 6003 6326 -7 3130 116 8 47 chr13 18922360 18922498 -82950671 + L1MB3 LINE L1 5800 5942 -241 691 218 21 21 chr13 18922533 18922721 -82950448 - L1M4 LINE L1 -3714 2432 2245 831 165 0 0 chr13 18922726 18922853 -82950316 + FLAM_C SINE Alu 1 127 -6 1103 132 5 21 chr13 18922877 18923091 -82950078 + MER1B DNA MER1_type 56 335 -4 915 202 61 45 chr13 18923159 18923221 -82949948 + L1MB3 LINE L1 5932 5992 -191 1782 152 21 0 chr13 18923221 18923510 -82949659 - AluJb SINE Alu -17 295 1 915 202 61 45 chr13 18923510 18923694 -82949475 + L1MB3 LINE L1 5992 6182 -1 379 227 136 39 chr13 18924606 18924760 -82948409 + MIR SINE MIR 94 262 0 2340 101 10 0 chr13 18925178 18925485 -82947684 + AluSx SINE Alu 1 310 -2 2760 16 0 13 chr13 18926850 18927158 -82946011 + AluYa5 SINE Alu 1 304 -7 235 311 59 0 chr13 18928610 18928745 -82944424 + MIR SINE MIR 84 226 -36 1988 203 0 18 chr13 18928745 18928884 -82944285 - MLT1B LTR MaLR 0 390 250 2079 134 156 5 chr13 18928884 18929256 -82943913 - MSTA LTR MaLR 0 428 1 1988 203 0 18 chr13 18929256 18929506 -82943663 - MLT1B LTR MaLR -140 250 8 204 40 0 0 chr13 18930039 18930064 -82943105 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 182 209 23 0 chr13 18930067 18930110 -82943059 - L2 LINE L2 -25 3247 3204 465 173 0 0 chr13 18931323 18931398 -82941771 + FRAM SINE Alu 43 117 -59 2312 114 0 0 chr13 18931904 18932203 -82940966 - AluSq SINE Alu -14 299 1 1375 203 12 103 chr13 18932878 18933277 -82939892 - MLT1A1 LTR MaLR 0 365 3 1885 156 82 2 chr13 18933603 18933940 -82939229 - MLT1A1 LTR MaLR 0 396 1 1578 193 121 24 chr13 18934072 18934492 -82938677 - MLT1C LTR MaLR -6 461 1 1825 160 7 0 chr13 18935320 18935620 -82937549 - L1MB3 LINE L1 -59 6124 5823 1133 131 15 45 chr13 18935625 18935824 -82937345 - AluSg/x SINE Alu 0 312 120 10949 62 18 10 chr13 18935833 18937208 -82935961 - SVA Other Other 0 1386 1 1967 186 15 33 chr13 18937220 18937700 -82935469 - L1MB2 LINE L1 -339 5832 5353 1736 169 48 24 chr13 18938666 18938997 -82934172 - MER58B DNA MER1_type 0 341 3 2006 156 64 22 chr13 18939735 18940095 -82933074 - THE1C LTR MaLR 0 375 1 319 322 114 20 chr13 18940464 18940613 -82932556 - MIR3 SINE MIR -9 199 37 2768 182 22 0 chr13 18941090 18941547 -82931622 - MLT1C LTR MaLR 0 467 1 311 343 122 6 chr13 18942456 18942637 -82930532 - MIR SINE MIR -60 202 1 1413 159 126 4 chr13 18942937 18943208 -82929961 + AluJo SINE Alu 1 304 -8 375 127 0 0 chr13 18943776 18943839 -82929330 + (CA)n Simple_repeat Simple_repeat 1 63 0 458 293 142 29 chr13 18944029 18944275 -82928894 + Charlie8 DNA MER1_type 3 276 -2141 362 145 16 0 chr13 18944330 18944392 -82928777 + Charlie8 DNA MER1_type 2341 2403 -14 620 301 28 0 chr13 18945551 18945727 -82927442 - MIR SINE MIR -22 240 60 1697 179 78 29 chr13 18945769 18946115 -82927054 + MLT1A1 LTR MaLR 1 363 -2 28 29 0 0 chr13 18946591 18946626 -82926543 + AT_rich Low_complexity Low_complexity 1 35 0 200 100 0 0 chr13 18948130 18948160 -82925009 + MIR SINE MIR 125 154 -108 299 308 38 15 chr13 18948347 18948480 -82924689 - MIR3 SINE MIR -71 137 2 283 286 14 0 chr13 18949722 18949792 -82923377 + L2 LINE L2 3240 3310 -3 712 65 9 9 chr13 18950019 18950127 -82923042 + (TCCA)n Simple_repeat Simple_repeat 1 108 0 340 258 21 0 chr13 18952034 18952127 -82921042 - MER103 DNA DNA 0 166 72 27 0 0 0 chr13 18953378 18953405 -82919764 + AT_rich Low_complexity Low_complexity 1 27 0 1636 180 36 4 chr13 18955060 18955338 -82917831 + AluJb SINE Alu 5 291 -21 2236 87 7 0 chr13 18956160 18956474 -82916695 + AluSp SINE Alu 1 313 0 2027 184 63 20 chr13 18957918 18958364 -82914805 - MLT1C LTR MaLR 0 467 3 555 256 63 59 chr13 18958536 18958774 -82914395 + L3 LINE CR1 383 621 -956 2276 79 0 54 chr13 18958877 18959192 -82913977 + AluY SINE Alu 1 298 -13 201 365 77 0 chr13 18959235 18959339 -82913830 + L3 LINE CR1 714 825 -752 282 237 0 0 chr13 18959733 18959809 -82913360 + (TG)n Simple_repeat Simple_repeat 2 77 0 551 111 0 12 chr13 18960116 18960197 -82912972 - MADE1 DNA Mariner 0 80 1 234 226 0 48 chr13 18960935 18960997 -82912172 - L2 LINE L2 -1 3312 3254 347 96 0 0 chr13 18961050 18961102 -82912067 - Alu SINE Alu -2 298 247 1604 100 0 0 chr13 18961125 18961335 -82911834 - AluSg/x SINE Alu -16 294 85 1838 136 49 0 chr13 18961664 18961951 -82911218 + AluJb SINE Alu 1 301 -11 392 330 70 48 chr13 18962540 18962720 -82910449 - L3 LINE CR1 -1 1576 1387 2293 96 0 0 chr13 18962720 18963012 -82910157 - AluY SINE Alu -19 292 1 392 330 70 48 chr13 18963012 18963101 -82910068 - L3 LINE CR1 -190 1387 1301 21 0 0 0 chr13 18963506 18963527 -82909642 + AT_rich Low_complexity Low_complexity 1 21 0 2428 77 0 13 chr13 18964087 18964397 -82908772 + AluY SINE Alu 1 306 -5 231 346 83 20 chr13 18965152 18965406 -82907763 + L2 LINE L2 1939 2208 -1106 374 236 94 16 chr13 18965469 18965596 -82907573 - MIR SINE MIR -89 173 37 417 374 15 8 chr13 18965644 18965906 -82907263 + L2 LINE L2 2241 2504 -810 245 346 34 63 chr13 18966144 18966349 -82906820 + L2 LINE L2 2851 3049 -223 310 99 0 0 chr13 18966575 18966624 -82906545 - MLT2C2 LTR ERVL 0 464 422 2259 109 27 56 chr13 18966647 18967022 -82906147 + THE1B LTR MaLR 1 364 0 3965 121 36 2 chr13 18967024 18967723 -82905446 + THE1B-int LTR MaLR 3 752 -828 335 250 149 42 chr13 18969850 18970018 -82903151 - MER5A DNA MER1_type 0 189 4 792 217 30 6 chr13 18970031 18970197 -82902972 + MER5A DNA MER1_type 17 186 -3 2135 133 0 3 chr13 18970757 18971065 -82902104 + AluSx SINE Alu 3 309 -3 2561 50 3 0 chr13 18971525 18971823 -82901346 + AluY SINE Alu 1 299 -12 926 69 15 0 chr13 18971867 18971997 -82901172 + (TTTC)n Simple_repeat Simple_repeat 3 134 0 1159 145 224 59 chr13 18973137 18973392 -82899777 + AluSg SINE Alu 1 297 -3 277 318 33 26 chr13 18973642 18973793 -82899376 - MIR SINE MIR -79 183 32 242 231 125 58 chr13 18974134 18974238 -82898931 - L2 LINE L2 -1 3271 3161 430 94 0 0 chr13 18974590 18974643 -82898526 - Alu SINE Alu -20 292 240 1746 187 13 10 chr13 18974894 18975204 -82897965 + AluJo SINE Alu 1 311 -1 2909 0 0 0 chr13 18975255 18975562 -82897607 - AluYa5 SINE Alu -4 307 1 21 0 0 0 chr13 18976177 18976198 -82896971 + AT_rich Low_complexity Low_complexity 1 21 0 568 91 13 0 chr13 18978050 18978127 -82895042 + MADE1 DNA Mariner 1 78 -2 248 353 76 8 chr13 18978252 18978371 -82894798 + MIR SINE MIR 20 146 -116 347 304 35 94 chr13 18978443 18978870 -82894299 + L2 LINE L2 2461 2862 -452 4296 125 7 0 chr13 18979103 18979701 -82893468 - LTR43 LTR ERV1 0 602 1 565 278 84 16 chr13 18979773 18979964 -82893205 + MIR SINE MIR 1 204 -58 217 359 0 0 chr13 18983410 18983488 -82889681 + MIR SINE MIR 49 126 -82 184 184 0 26 chr13 18984295 18984333 -82888836 - L2 LINE L2 -15 3257 3221 387 60 0 0 chr13 18984750 18984800 -82888369 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 33 0 0 chr13 18986735 18986765 -82886404 + AT_rich Low_complexity Low_complexity 1 30 0 333 68 0 0 chr13 18989113 18989157 -82884012 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 31 58 0 0 chr13 18991352 18991404 -82881765 + AT_rich Low_complexity Low_complexity 1 52 0 2106 132 0 0 chr13 18991518 18991805 -82881364 - AluSx SINE Alu -23 289 3 197 284 30 15 chr13 18992052 18992119 -82881050 + L3 LINE CR1 1386 1453 -124 222 344 50 32 chr13 18992871 18993092 -82880077 - L2 LINE L2 -221 3051 2827 1870 147 0 11 chr13 18993409 18993694 -82879475 + AluJo SINE Alu 1 282 -30 263 313 76 15 chr13 18993756 18993887 -82879282 + MER91C DNA MER1_type 1 139 -1 252 0 0 0 chr13 18994505 18994533 -82878636 + (TG)n Simple_repeat Simple_repeat 1 28 0 1278 147 13 55 chr13 18995512 18995750 -82877419 + AluJo SINE Alu 85 312 0 203 86 0 29 chr13 18997231 18997266 -82875903 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 303 140 0 0 chr13 18997423 18997473 -82875696 + (TATG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr13 18997506 18997531 -82875638 + AT_rich Low_complexity Low_complexity 1 25 0 253 283 100 99 chr13 18998077 18998538 -82874631 + L3 LINE CR1 476 990 -587 432 333 55 52 chr13 18998621 18998951 -82874218 + L3 LINE CR1 1193 1523 -54 610 295 25 17 chr13 18999210 18999453 -82873716 + L1ME LINE L1 5451 5672 -449 785 300 14 18 chr13 18999586 18999809 -82873360 + MIR SINE MIR 29 250 -12 229 236 91 36 chr13 18999841 18999951 -82873218 + L1ME LINE L1 5777 5892 -229 2407 86 0 0 chr13 19000566 19000867 -82872302 - AluSq SINE Alu -11 302 2 270 315 11 0 chr13 19001185 19001277 -82871892 - L1ME LINE L1 -303 5818 5726 278 308 33 33 chr13 19002200 19002320 -82870849 - MIR SINE MIR -115 147 28 180 0 0 0 chr13 19002513 19002533 -82870636 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 306 241 72 33 chr13 19002791 19002938 -82870231 + MIR SINE MIR 61 211 -51 25 0 0 0 chr13 19003126 19003151 -82870018 + AT_rich Low_complexity Low_complexity 1 25 0 1986 147 10 10 chr13 19003604 19003916 -82869253 - AluSx SINE Alu 0 312 1 516 234 33 181 chr13 19004555 19004953 -82868216 + L2 LINE L2 2974 3312 -1 192 385 24 0 chr13 19005022 19005105 -82868064 - L2 LINE L2 -219 3053 2969 770 117 50 0 chr13 19005145 19005265 -82867904 + L1MB3 LINE L1 6054 6179 -4 1786 177 0 7 chr13 19006883 19007183 -82865986 + AluSx SINE Alu 1 298 -14 362 205 291 8 chr13 19007490 19007617 -82865552 - MER5A DNA MER1_type 0 189 27 201 163 0 0 chr13 19007732 19007749 -82865420 + (TAA)n Simple_repeat Simple_repeat 1 17 -32 2080 129 3 0 chr13 19007749 19008036 -82865133 + AluSx SINE Alu 1 288 -24 201 163 0 0 chr13 19008036 19008047 -82865122 + (TAA)n Simple_repeat Simple_repeat 17 27 -22 2036 132 0 10 chr13 19008047 19008335 -82864834 + AluSx SINE Alu 1 285 -27 201 163 0 0 chr13 19008335 19008354 -82864815 + (TAA)n Simple_repeat Simple_repeat 26 49 0 429 292 61 37 chr13 19009207 19009377 -82863792 - MIR SINE MIR -63 145 23 1259 136 0 25 chr13 19010126 19010324 -82862845 - AluJb SINE Alu -7 305 113 1805 158 3 22 chr13 19011458 19011774 -82861395 + AluSx SINE Alu 1 310 -2 358 296 37 69 chr13 19012083 19012272 -82860897 + MIR SINE MIR 73 255 -7 2338 100 3 0 chr13 19012931 19013231 -82859938 + AluSp SINE Alu 1 301 -12 249 321 45 52 chr13 19013259 19013393 -82859776 + MER5B DNA MER1_type 41 173 -5 205 156 0 0 chr13 19014799 19014831 -82858338 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 222 0 0 chr13 19015446 19015482 -82857687 - L3 LINE CR1 -86 1491 1456 2190 103 6 25 chr13 19016019 19016338 -82856831 - AluSp SINE Alu 0 313 1 373 318 9 9 chr13 19017305 19017415 -82855754 + L2 LINE L2 3163 3272 0 427 215 103 9 chr13 19017643 19017750 -82855419 - L2 LINE L2 0 3313 3197 195 247 101 45 chr13 19017939 19018028 -82855141 + L3b LINE CR1 1343 1436 -147 233 224 0 0 chr13 19018441 19018490 -82854679 + T-rich Low_complexity Low_complexity 2 50 0 26 30 0 0 chr13 19018840 19018873 -82854296 + AT_rich Low_complexity Low_complexity 1 33 0 329 170 32 11 chr13 19022705 19022799 -82850370 + (TA)n Simple_repeat Simple_repeat 2 97 0 862 225 63 28 chr13 19023197 19023450 -82849719 - L1ME3A LINE L1 0 6170 5909 361 60 20 0 chr13 19025986 19026036 -82847133 + Alu SINE Alu 1 51 -251 349 349 176 6 chr13 19034212 19034542 -82838627 + L3 LINE CR1 709 1094 -483 683 162 8 17 chr13 19034544 19034661 -82838508 - FLAM_A SINE Alu -8 134 19 721 331 23 43 chr13 19034661 19034808 -82838361 + L3 LINE CR1 1234 1382 -195 1596 59 0 20 chr13 19034808 19035010 -82838159 - AluY SINE Alu 0 311 114 721 331 23 43 chr13 19035010 19035209 -82837960 + L3 LINE CR1 1382 1573 -4 550 323 0 12 chr13 19138041 19138208 -82734961 + MIR3 SINE MIR 33 197 -11 188 243 108 14 chr13 19141283 19141357 -82731812 - MIR SINE MIR -109 153 73 701 322 90 52 chr13 19141771 19142808 -82730361 + L2 LINE L2 2175 3272 0 28 29 0 0 chr13 19142822 19142857 -82730312 + AT_rich Low_complexity Low_complexity 1 35 0 1383 153 133 7 chr13 19143207 19143507 -82729662 - MER44D DNA MER2_type -1 608 1 2252 93 3 7 chr13 19143566 19143855 -82729314 - AluSx SINE Alu -24 288 1 371 282 200 12 chr13 19144323 19144493 -82728676 + MIR SINE MIR 32 233 -29 2011 125 0 29 chr13 19145342 19145654 -82727515 - AluSx SINE Alu -9 303 1 2483 73 0 10 chr13 19145667 19145980 -82727189 - AluSg SINE Alu 0 310 1 2481 60 7 0 chr13 19145980 19146280 -82726889 - AluSq SINE Alu -11 302 1 2521 196 144 43 chr13 19147659 19148409 -82724760 - LTR1B LTR ERV1 0 826 1 2801 138 15 4 chr13 19148522 19148978 -82724191 + MER4C LTR ERV1 1 461 -4 300 332 183 30 chr13 19151232 19151533 -82721636 + L2 LINE L2 2925 3271 -1 281 352 23 8 chr13 19151802 19151930 -82721239 + MER5B DNA MER1_type 1 130 -48 467 179 32 21 chr13 19151937 19152032 -82721137 - L1MC1 LINE L1 -9 6324 6229 526 307 56 42 chr13 19152128 19152343 -82720826 - MIR SINE MIR -34 228 11 25 31 0 0 chr13 19152700 19152732 -82720437 + AT_rich Low_complexity Low_complexity 1 32 0 522 315 90 2 chr13 19153008 19153421 -82719748 + L1M4 LINE L1 3719 4167 -1979 228 85 38 66 chr13 19154305 19154411 -82718758 + (TAAA)n Simple_repeat Simple_repeat 1 103 0 320 250 0 0 chr13 19154963 19155043 -82718126 - Tigger2a DNA MER2_type -354 80 1 607 283 124 13 chr13 19156377 19156603 -82716566 - MIR SINE MIR 0 262 12 292 148 19 0 chr13 19157230 19157284 -82715885 + MER116 DNA Mariner 1 55 -25 1631 165 77 9 chr13 19157883 19158223 -82714946 - MLT2C1 LTR ERVL 0 397 35 692 258 50 0 chr13 19158242 19158424 -82714745 - MIR SINE MIR -59 203 13 295 287 79 30 chr13 19159849 19159950 -82713219 + MIR SINE MIR 2 107 -155 2039 88 11 18 chr13 19160287 19160595 -82712574 + AluSp SINE Alu 2 307 0 1417 54 0 0 chr13 19160595 19160762 -82712407 + AluSp SINE Alu 135 301 -12 2462 151 112 78 chr13 19161574 19162110 -82711059 - MLT2B3 LTR ERVL 0 554 1 502 275 163 0 chr13 19162380 19162540 -82710629 - MIR SINE MIR -2 260 75 28 0 0 0 chr13 19163732 19163760 -82709409 + AT_rich Low_complexity Low_complexity 1 28 0 1577 199 48 3 chr13 19163953 19164244 -82708925 - AluSx SINE Alu -8 304 1 879 193 113 0 chr13 19164389 19164602 -82708567 + MSTD-int LTR MaLR 1499 1735 0 1254 228 94 32 chr13 19164602 19164975 -82708194 + MSTD LTR MaLR 1 396 0 240 288 0 0 chr13 19166323 19166382 -82706787 + AluJ/FLAM SINE Alu 2 60 -242 6015 166 10 33 chr13 19166863 19167975 -82705194 + L1PA15-16 LINE L1 1 1086 -5763 1975 197 29 30 chr13 19167988 19168711 -82704458 + L1PA15-16 LINE L1 2721 3447 -3402 325 242 78 33 chr13 19169003 19169156 -82704013 + L1MEd LINE L1 1028 1187 -5018 2519 47 0 0 chr13 19169213 19169513 -82703656 + AluY SINE Alu 1 300 -11 319 265 110 40 chr13 19169566 19169766 -82703403 + L1MEd LINE L1 1475 1688 -4708 267 152 80 24 chr13 19169769 19169894 -82703275 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 0 0 0 chr13 19169909 19169931 -82703238 + AT_rich Low_complexity Low_complexity 1 22 0 477 130 91 0 chr13 19170215 19170292 -82702877 + AluJb SINE Alu 85 168 -144 1991 174 32 124 chr13 19170293 19170947 -82702222 + LTR9 LTR ERV1 1 594 -18 2856 161 25 20 chr13 19172359 19173284 -82699885 + L1M2 LINE L1 4808 5727 -573 355 164 0 0 chr13 19175542 19175603 -82697566 - L1M2c LINE L1 -4599 2569 2509 4168 140 72 12 chr13 19175610 19176376 -82696793 - Tigger1 DNA MER2_type -5 2413 1602 366 23 0 0 chr13 19176399 19176442 -82696727 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr13 19176443 19176463 -82696706 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 754 129 0 91 chr13 19176463 19176595 -82696574 - FLAM_C SINE Alu -22 121 2 1656 154 3 3 chr13 19176596 19176882 -82696287 - Tigger1 DNA MER2_type -826 1592 1307 10226 196 28 13 chr13 19177038 19179518 -82693651 - L1 LINE L1 -1168 6397 3881 1333 200 103 0 chr13 19179723 19180662 -82692507 - L1 LINE L1 -5372 2193 1107 430 217 17 25 chr13 19180661 19180781 -82692388 - L1 LINE L1 -7432 133 15 * 412 218 61 0 chr13 19180780 19180927 -82692242 - L1M2c LINE L1 -4992 2176 2021 * 763 194 117 4 chr13 19180926 19181174 -82691995 + L1 LINE L1 3113 3388 -2758 1762 161 92 34 chr13 19181183 19181563 -82691606 - MSTB1 LTR MaLR -30 402 1 2825 215 18 8 chr13 19181563 19182219 -82690950 + L1 LINE L1 3388 4050 -2096 260 276 207 0 chr13 19182477 19182564 -82690605 - MIR SINE MIR -149 113 9 24 53 0 0 chr13 19183241 19183279 -82689890 + AT_rich Low_complexity Low_complexity 1 38 0 196 263 35 0 chr13 19184423 19184480 -82688689 - L2 LINE L2 -28 3244 3186 252 86 0 0 chr13 19185030 19185065 -82688104 + (T)n Simple_repeat Simple_repeat 1 35 0 12558 144 19 60 chr13 19185666 19187825 -82685344 + L1PA12 LINE L1 482 3739 -3845 237 33 0 0 chr13 19187825 19187855 -82685314 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 12558 144 19 60 chr13 19187855 19188405 -82684764 + L1PA12 LINE L1 3739 4310 -3274 34 0 0 0 chr13 19190686 19190720 -82682449 + AT_rich Low_complexity Low_complexity 1 34 0 2374 78 0 3 chr13 19191993 19192314 -82680855 + L1PB1 LINE L1 5832 6151 0 295 319 7 14 chr13 19192335 19192476 -82680693 - MER112 DNA MER1_type -104 156 17 1637 125 8 4 chr13 19293614 19293878 -82579291 - THE1A LTR MaLR -90 265 1 1124 64 6 0 chr13 19293878 19294035 -82579134 - THE1A-int LTR MaLR 0 1580 1423 * 4651 94 39 10 chr13 19294033 19294735 -82578434 - THE1A-int LTR MaLR -857 723 2 2508 93 8 8 chr13 19294736 19295091 -82578078 - THE1A LTR MaLR 0 355 1 2156 130 0 10 chr13 19295106 19295407 -82577762 + AluSx SINE Alu 1 298 -14 636 100 33 33 chr13 19295407 19295587 -82577582 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 28 0 0 chr13 19295642 19295678 -82577491 + AT_rich Low_complexity Low_complexity 1 36 0 288 344 10 10 chr13 19296252 19296348 -82576821 + MIR SINE MIR 19 114 -94 200 200 18 0 chr13 19296881 19296936 -82576233 + CT-rich Low_complexity Low_complexity 2 57 0 318 357 16 8 chr13 19296964 19297090 -82576079 + L2 LINE L2 3185 3311 -2 2206 120 10 0 chr13 19298543 19298852 -82574317 + AluSx SINE Alu 1 312 0 2999 92 2 10 chr13 19301736 19302139 -82571030 + L1MA1 LINE L1 5903 6302 0 21 36 0 0 chr13 19306085 19306113 -82567056 + AT_rich Low_complexity Low_complexity 1 28 0 738 275 67 37 chr13 19306168 19306530 -82566639 + MLT1I LTR MaLR 52 395 -14 684 48 10 19 chr13 19309533 19309636 -82563533 + (GGAA)n Simple_repeat Simple_repeat 4 105 0 658 262 24 12 chr13 19310842 19311010 -82562159 + MIR SINE MIR 49 218 -44 194 329 106 63 chr13 19311151 19311388 -82561781 - L2 LINE L2 0 3272 3026 201 39 0 0 chr13 19312838 19312864 -82560305 + (CA)n Simple_repeat Simple_repeat 1 26 0 374 236 68 96 chr13 19313598 19313818 -82559351 + MER112 DNA MER1_type 5 218 -42 217 273 48 100 chr13 19313913 19314056 -82559113 + L2 LINE L2 2451 2579 -735 1712 94 31 5 chr13 19314056 19314280 -82558889 + MER30 DNA MER1_type 1 230 0 217 273 48 100 chr13 19314280 19314367 -82558802 + L2 LINE L2 2579 2669 -645 389 335 109 40 chr13 19314559 19314863 -82558306 + L2 LINE L2 2932 3256 -16 190 279 110 118 chr13 19315626 19315863 -82557306 + L2 LINE L2 2954 3188 -84 297 255 57 9 chr13 19316120 19316226 -82556943 + MIR SINE MIR 74 184 -78 227 295 54 60 chr13 19316995 19317144 -82556025 + L2 LINE L2 2702 2849 -465 2083 132 7 7 chr13 19319249 19319553 -82553616 - AluSx SINE Alu -8 304 1 207 179 0 0 chr13 19320046 19320085 -82553084 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 274 0 0 chr13 19320874 19320947 -82552222 + GA-rich Low_complexity Low_complexity 4 76 0 1353 174 101 22 chr13 19321637 19321913 -82551256 + AluJb SINE Alu 1 298 -14 2342 110 3 0 chr13 19322051 19322360 -82550809 - AluSg SINE Alu 0 310 1 22 0 0 0 chr13 19322704 19322726 -82550443 + AT_rich Low_complexity Low_complexity 1 22 0 290 270 14 14 chr13 19322794 19322868 -82550301 + MIR SINE MIR 74 147 -61 442 268 12 95 chr13 19324004 19324097 -82549072 - MIR SINE MIR -27 235 161 2203 104 3 0 chr13 19324097 19324385 -82548784 + AluSp SINE Alu 5 293 -20 442 268 12 95 chr13 19324385 19324459 -82548710 - MIR SINE MIR -101 161 82 277 271 106 65 chr13 19324943 19325113 -82548056 - MIR SINE MIR -41 221 45 579 215 44 0 chr13 19327246 19327381 -82545788 + MIR SINE MIR 53 193 -69 38 40 0 27 chr13 19327544 19327578 -82545591 + AT_rich Low_complexity Low_complexity 1 34 -38 1903 124 35 18 chr13 19327578 19327861 -82545308 + AluSx SINE Alu 1 288 -24 38 40 0 27 chr13 19327861 19327900 -82545269 + AT_rich Low_complexity Low_complexity 34 72 0 995 306 98 30 chr13 19327900 19328440 -82544729 + Charlie7 DNA MER1_type 113 689 -1923 388 182 25 66 chr13 19328425 19328546 -82544623 + Charlie7 DNA MER1_type 2497 2612 0 * 333 0 0 0 chr13 19328892 19328929 -82544240 + (TG)n Simple_repeat Simple_repeat 2 38 0 2305 96 0 0 chr13 19329370 19329673 -82543496 + AluY SINE Alu 1 303 -8 822 290 38 76 chr13 19329784 19330260 -82542909 + L2 LINE L2 2851 3308 -5 240 209 0 0 chr13 19330814 19330857 -82542312 + L2 LINE L2 3219 3261 -11 2451 73 3 19 chr13 19332223 19332539 -82540630 + AluY SINE Alu 1 311 0 213 22 0 89 chr13 19332544 19332589 -82540580 + (TAAAAA)n Simple_repeat Simple_repeat 4 44 0 584 218 123 41 chr13 19333429 19333599 -82539570 - L1ME LINE L1 -382 5739 5556 236 317 122 80 chr13 19333928 19334329 -82538840 - L2 LINE L2 -2 3270 2853 204 326 11 65 chr13 19335479 19335571 -82537598 - MIR SINE MIR -95 113 27 189 0 0 0 chr13 19336998 19337019 -82536150 + (GGAA)n Simple_repeat Simple_repeat 2 22 0 270 0 0 0 chr13 19337850 19337880 -82535289 + (CA)n Simple_repeat Simple_repeat 2 31 0 207 361 78 44 chr13 19339816 19340229 -82532940 - L2 LINE L2 -337 2977 2551 463 257 77 22 chr13 19340278 19340461 -82532708 + L1MC/D LINE L1 5625 5817 -1991 248 197 0 118 chr13 19340650 19340726 -82532443 - MER91A DNA MER1_type -129 67 1 1599 175 11 7 chr13 19341185 19341454 -82531715 + AluJb SINE Alu 12 281 -31 192 40 0 0 chr13 19341458 19341483 -82531686 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 581 259 138 0 chr13 19341869 19342058 -82531111 + MIR SINE MIR 38 252 -10 76 51 0 0 chr13 19342641 19342759 -82530410 + AT_rich Low_complexity Low_complexity 1 118 0 259 221 52 39 chr13 19342865 19342942 -82530227 - L1ME4a LINE L1 -108 6013 5936 1795 149 41 16 chr13 19342973 19343288 -82529881 + MER2 DNA MER2_type 22 344 -1 372 43 0 0 chr13 19343289 19343335 -82529834 + (TG)n Simple_repeat Simple_repeat 1 46 0 251 239 14 14 chr13 19343335 19343406 -82529763 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 573 94 0 0 chr13 19346139 19346224 -82526945 + (CA)n Simple_repeat Simple_repeat 2 86 0 6851 86 3 5 chr13 19347266 19348208 -82524961 + L1PB1 LINE L1 5210 6150 -1 2560 167 57 5 chr13 19348236 19348678 -82524491 + LTR32 LTR ERVL 7 471 0 225 108 0 0 chr13 19349467 19349504 -82523665 + (CA)n Simple_repeat Simple_repeat 2 38 0 2328 157 68 30 chr13 19349594 19350034 -82523135 + LTR32 LTR ERVL 15 471 0 306 139 0 0 chr13 19350861 19350904 -82522265 - MER45A DNA AcHobo 0 178 136 848 67 0 0 chr13 19350927 19351032 -82522137 + AluY SINE Alu 206 310 -1 1704 149 103 0 chr13 19351034 19351315 -82521854 + AluJo SINE Alu 1 310 -2 447 251 56 39 chr13 19351457 19351636 -82521533 + L2 LINE L2 3108 3289 -24 2368 101 0 3 chr13 19351895 19352203 -82520966 + AluSg SINE Alu 1 307 -3 1960 140 70 3 chr13 19352572 19352915 -82520254 - L1MB2 LINE L1 -7 6164 5799 620 182 6 136 chr13 19353116 19353196 -82519973 - MER45A DNA AcHobo -1403 178 132 2648 150 56 23 chr13 19353196 19353353 -82519816 + L1MB2 LINE L1 5670 5820 -351 2261 107 0 0 chr13 19353353 19353642 -82519527 + AluSc SINE Alu 1 289 -20 2648 150 56 23 chr13 19353642 19353963 -82519206 + L1MB2 LINE L1 5820 6164 -7 620 182 6 136 chr13 19353963 19354058 -82519111 - MER45A DNA AcHobo -1449 132 26 2290 91 0 0 chr13 19354861 19355146 -82518023 + AluSq SINE Alu 1 285 -28 1019 240 32 16 chr13 19355169 19355419 -82517750 + MIR SINE MIR 9 262 0 1434 233 78 18 chr13 19355830 19356216 -82516953 - MLT1I LTR MaLR 0 409 1 265 214 270 0 chr13 19356687 19356776 -82516393 - L2 LINE L2 0 3272 3160 1928 170 41 27 chr13 19357353 19357718 -82515451 + MLT1A2 LTR MaLR 1 370 -4 2130 136 3 0 chr13 19357917 19358219 -82514950 - AluSx SINE Alu -9 303 1 264 327 26 96 chr13 19359303 19359688 -82513481 - L2 LINE L2 -33 3239 2882 230 255 0 0 chr13 19362548 19362595 -82510574 - MER81 DNA DNA -36 78 32 1138 155 11 5 chr13 19363328 19363515 -82509654 + MER2 DNA MER2_type 3 190 -155 2234 109 0 10 chr13 19363515 19363819 -82509350 + AluSx SINE Alu 1 301 -11 232 211 56 42 chr13 19363888 19363959 -82509210 + MER2 DNA MER2_type 267 338 -7 2418 136 115 14 chr13 19364121 19364540 -82508629 + LOR1b LTR ERV1 1 461 0 5913 135 96 1 chr13 19364559 19365491 -82507678 + LTR28 LTR ERV1 1 1020 0 290 260 67 10 chr13 19366164 19366268 -82506901 + MIR SINE MIR 86 195 -67 837 253 5 31 chr13 19366532 19366582 -82506587 + MER5A DNA MER1_type 1 51 -138 2862 185 18 73 chr13 19366582 19367199 -82505970 + MER119 DNA MER1_type 1 583 0 837 253 5 31 chr13 19367199 19367342 -82505827 + MER5A DNA MER1_type 51 189 0 211 326 52 42 chr13 19368962 19369155 -82504014 + L2 LINE L2 2569 2763 -551 191 302 0 0 chr13 19369658 19369711 -82503458 - L2 LINE L2 -56 3257 3205 334 331 48 0 chr13 19370111 19370235 -82502934 + MIR SINE MIR 26 155 -107 225 211 39 0 chr13 19370262 19370314 -82502855 - MIR SINE MIR -50 212 159 4882 160 14 104 chr13 19370318 19372538 -82500631 - L1MB2 LINE L1 -1 6170 4166 21 0 0 0 chr13 19372995 19373016 -82500153 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr13 19373021 19373049 -82500120 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 5642 93 18 8 chr13 19373049 19374256 -82498913 + SVA Other Other 52 1386 0 248 350 166 14 chr13 19374952 19375169 -82498000 - L2 LINE L2 -505 2809 2560 658 192 212 25 chr13 19375443 19375641 -82497528 - MER46A DNA MER2_type -1 235 1 * 775 149 0 0 chr13 19375529 19375643 -82497526 + MER46A DNA MER2_type 33 146 -90 343 273 36 72 chr13 19375746 19375885 -82497284 - MIR SINE MIR -73 135 2 1308 249 109 31 chr13 19375941 19376428 -82496741 + MLT1H LTR MaLR 25 549 0 258 190 35 17 chr13 19378037 19378095 -82495074 - L2 LINE L2 0 3313 3255 21 0 0 0 chr13 19378157 19378178 -82494991 + AT_rich Low_complexity Low_complexity 1 21 0 2247 96 0 0 chr13 19378400 19378730 -82494439 + AluSx SINE Alu 1 330 0 354 296 94 13 chr13 19379259 19379418 -82493751 + MER5B DNA MER1_type 7 178 0 539 134 4 15 chr13 19379603 19379855 -82493314 + AluJo SINE Alu 1 312 0 225 298 16 24 chr13 19380091 19380215 -82492954 + CT-rich Low_complexity Low_complexity 1 123 0 428 310 89 24 chr13 19380994 19381207 -82491962 - MIR SINE MIR -23 239 13 198 0 0 0 chr13 19381266 19381288 -82491881 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1704 174 3 3 chr13 19381293 19381575 -82491594 - AluJb SINE Alu -30 282 1 298 306 200 30 chr13 19381989 19382254 -82490915 - L3 LINE CR1 -555 1022 713 373 362 27 43 chr13 19382264 19382452 -82490717 + L2 LINE L2 3087 3271 -1 258 210 123 12 chr13 19382591 19382672 -82490497 + MIR SINE MIR 95 184 -78 395 321 9 0 chr13 19385521 19385630 -82487539 - MER81 DNA DNA -1 113 4 3489 174 73 24 chr13 19385953 19386685 -82486484 + LTR1B LTR ERV1 1 785 0 23 33 0 0 chr13 19388303 19388333 -82484836 + AT_rich Low_complexity Low_complexity 1 30 0 277 335 31 37 chr13 19388526 19388717 -82484452 - L2 LINE L2 -927 2387 2198 185 229 72 60 chr13 19488895 19488978 -82384191 + L2 LINE L2 3227 3310 -3 2061 291 102 16 chr13 19489015 19489815 -82383354 + L2 LINE L2 1928 2796 -518 215 266 46 46 chr13 19489844 19489953 -82383216 + L2 LINE L2 2768 2876 -438 461 243 35 62 chr13 19489969 19490113 -82383056 + L2 LINE L2 3170 3309 -4 444 82 0 0 chr13 19497069 19497130 -82376039 + (TTCTC)n Simple_repeat Simple_repeat 5 65 0 1924 129 7 4 chr13 19497130 19497409 -82375760 - AluSq SINE Alu -32 281 2 667 129 0 170 chr13 19497409 19497580 -82375589 - AluJb SINE Alu -167 145 4 2201 105 11 0 chr13 19498868 19499154 -82374015 + AluSc SINE Alu 2 290 -19 1357 134 99 95 chr13 19499461 19499775 -82373394 + AluJb SINE Alu 1 315 0 2410 92 48 28 chr13 19499947 19500304 -82372865 - THE1B LTR MaLR 0 364 1 567 29 0 0 chr13 19501321 19501390 -82371779 + (TG)n Simple_repeat Simple_repeat 2 70 0 896 223 27 0 chr13 19501936 19502120 -82371049 + MER5A DNA MER1_type 1 189 0 285 29 0 0 chr13 19502172 19502206 -82370963 + (TG)n Simple_repeat Simple_repeat 2 35 0 256 259 121 52 chr13 19502447 19502563 -82370606 - MIR3 SINE MIR -27 181 58 183 328 0 0 chr13 19503229 19503293 -82369876 + L2 LINE L2 3250 3313 0 2250 100 10 0 chr13 19504030 19504329 -82368840 - AluSc SINE Alu -7 302 1 214 250 42 83 chr13 19504778 19504850 -82368319 + L2 LINE L2 3164 3232 -40 21 36 0 0 chr13 19505414 19505442 -82367727 + AT_rich Low_complexity Low_complexity 1 28 0 3050 106 50 10 chr13 19505442 19505943 -82367226 - LTR9B LTR ERV1 -82 562 42 1232 136 0 0 chr13 19505951 19506150 -82367019 - HUERS-P3 LTR ERV1 -3 8916 8718 1249 141 5 0 chr13 19506192 19506391 -82366778 - LTR9B LTR ERV1 0 644 445 437 309 137 44 chr13 19506791 19507199 -82365970 - L2 LINE L2 -401 2913 2468 325 337 31 0 chr13 19507256 19507354 -82365815 - L2 LINE L2 -3 3269 3169 311 358 73 0 chr13 19508046 19508225 -82364944 - L2 LINE L2 -534 2780 2589 337 305 16 75 chr13 19508239 19508321 -82364848 + MIR SINE MIR 87 172 -90 481 250 44 61 chr13 19508321 19508501 -82364668 + MER69A DNA AcHobo 1 177 0 337 305 16 75 chr13 19508501 19508605 -82364564 + MIR SINE MIR 172 262 0 326 340 106 30 chr13 19508611 19508979 -82364190 - L2 LINE L2 -817 2497 2102 605 206 82 38 chr13 19508979 19509254 -82363915 + L1MD3 LINE L1 6080 7984 -11 185 81 0 27 chr13 19509254 19509291 -82363878 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 399 119 0 0 chr13 19509632 19509699 -82363470 + (GA)n Simple_repeat Simple_repeat 2 68 0 351 207 75 126 chr13 19510696 19510746 -82362423 + L1MEd LINE L1 436 487 -5632 2237 96 0 0 chr13 19510746 19511052 -82362117 - AluSx SINE Alu 0 306 1 351 207 75 126 chr13 19511052 19511174 -82361995 + L1MEd LINE L1 487 600 -5519 687 264 38 27 chr13 19511318 19511610 -82361559 + L1MEd LINE L1 895 1189 -4930 234 106 85 0 chr13 19511609 19511656 -82361513 + L1MB5 LINE L1 6108 6158 -16 * 16525 151 51 15 chr13 19511737 19514097 -82359072 + L1M1 LINE L1 602 3180 -4385 1419 62 21 0 chr13 19514097 19514289 -82358880 - L1PA4 LINE L1 0 6155 5960 16525 151 51 15 chr13 19514289 19516066 -82357103 + L1M1 LINE L1 3180 4891 -2674 863 172 0 0 chr13 19516543 19516712 -82356457 + CT-rich Low_complexity Low_complexity 4 172 0 847 92 42 0 chr13 19516760 19516880 -82356289 - AluJo SINE Alu -174 138 14 1740 163 3 11 chr13 19518428 19518748 -82354421 + AluJb SINE Alu 3 320 0 13653 84 13 18 chr13 19519163 19521286 -82351883 + HERVH LTR ERV1 609 2719 -4994 2173 127 0 20 chr13 19521729 19522029 -82351140 + AluSx SINE Alu 3 296 -16 22 56 0 0 chr13 19522167 19522203 -82350966 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 19522858 19522887 -82350282 + AT_rich Low_complexity Low_complexity 1 29 0 2112 173 6 6 chr13 19523463 19523827 -82349342 - MLT1A1 LTR MaLR 0 365 2 1907 155 30 19 chr13 19524034 19524396 -82348773 - THE1C LTR MaLR -9 366 1 1950 126 0 42 chr13 19524509 19524818 -82348351 - AluSx SINE Alu -16 296 1 691 222 49 6 chr13 19524858 19525020 -82348149 + MIR SINE MIR 31 199 -63 770 289 72 0 chr13 19525790 19526025 -82347144 + MIR SINE MIR 11 262 0 23 54 0 0 chr13 19526208 19526245 -82346924 + AT_rich Low_complexity Low_complexity 1 37 0 231 36 0 0 chr13 19526573 19526601 -82346568 + (TG)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr13 19527185 19527214 -82345955 + AT_rich Low_complexity Low_complexity 1 29 0 1018 169 0 28 chr13 19527914 19528092 -82345077 - AluJb SINE Alu -17 295 123 275 372 24 64 chr13 19528367 19528663 -82344506 - L2 LINE L2 -53 3219 2936 187 238 0 0 chr13 19528729 19528771 -82344398 + L2 LINE L2 3272 3313 0 2126 98 0 21 chr13 19529035 19529322 -82343847 - AluSx SINE Alu -31 281 1 283 244 24 0 chr13 19529412 19529494 -82343675 - L1MC4a LINE L1 -1884 5924 5841 2264 136 17 8 chr13 19530793 19531154 -82342015 + MLT1A1 LTR MaLR 2 365 0 472 185 198 51 chr13 19533428 19533585 -82339584 + MER5A DNA MER1_type 10 189 0 1941 157 14 14 chr13 19533654 19534010 -82339159 - Tigger3(Golem) DNA MER2_type -2 3027 2672 284 94 0 94 chr13 19534112 19534165 -82339004 + FLAM_A SINE Alu 71 118 -15 2172 112 10 0 chr13 19534674 19534977 -82338192 - AluSq SINE Alu -6 307 2 2559 161 57 39 chr13 19535470 19536309 -82336860 + MER73 LTR ERVL 1 640 -4 556 275 145 19 chr13 19536564 19536771 -82336398 - MIR SINE MIR -9 253 21 2045 120 28 9 chr13 19536882 19537207 -82335962 - L1PA16 LINE L1 0 6166 5836 686 270 78 15 chr13 19537307 19537511 -82335658 - MIR SINE MIR -43 219 3 26 64 0 0 chr13 19537908 19537955 -82335214 + AT_rich Low_complexity Low_complexity 1 47 0 710 175 9 0 chr13 19539202 19539316 -82333853 + AluJo SINE Alu 6 120 -192 22 0 0 0 chr13 19539316 19539338 -82333831 + AT_rich Low_complexity Low_complexity 1 22 0 1154 188 0 5 chr13 19539347 19539544 -82333625 + AluJo SINE Alu 101 296 -16 2009 146 7 3 chr13 19540368 19540670 -82332499 - AluSx SINE Alu -9 303 1 2269 114 0 3 chr13 19541269 19541575 -82331594 + AluSc SINE Alu 1 305 -4 1769 294 127 41 chr13 19541768 19542136 -82331033 - L2 LINE L2 0 3313 2978 207 0 0 0 chr13 19542136 19542159 -82331010 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1769 294 127 41 chr13 19542159 19542350 -82330819 - L2 LINE L2 -335 2978 2805 2116 133 7 0 chr13 19542350 19542651 -82330518 - AluSx SINE Alu -5 307 5 1769 294 127 41 chr13 19542651 19543363 -82329806 - L2 LINE L2 -508 2805 1941 254 349 89 29 chr13 19543741 19544175 -82328994 - L2 LINE L2 -181 3091 2633 2088 112 4 0 chr13 19544261 19544538 -82328631 + AluSx SINE Alu 2 279 -33 450 0 0 0 chr13 19544538 19544588 -82328581 + (GAAAA)n Simple_repeat Simple_repeat 5 54 0 1205 181 33 13 chr13 19545125 19545429 -82327740 + MER33 DNA MER1_type 9 318 -6 904 275 128 18 chr13 19545503 19546001 -82327168 - HAL1 LINE L1 -98 2409 1857 1931 268 96 55 chr13 19546096 19546299 -82326870 - HAL1 LINE L1 -905 1602 1409 2049 86 0 4 chr13 19546299 19546566 -82326603 - AluY SINE Alu -5 306 41 1931 268 96 55 chr13 19546566 19546593 -82326576 - HAL1 LINE L1 -1098 1409 1385 1898 152 10 16 chr13 19546593 19546902 -82326267 - AluJo SINE Alu -5 307 1 1931 268 96 55 chr13 19546902 19547034 -82326135 - HAL1 LINE L1 -1122 1385 1260 1683 115 35 8 chr13 19547034 19547295 -82325874 - AluSx SINE Alu -5 307 40 1931 268 96 55 chr13 19547295 19547691 -82325478 - HAL1 LINE L1 -1247 1260 882 222 105 0 0 chr13 19547691 19547729 -82325440 + (TG)n Simple_repeat Simple_repeat 1 38 0 1931 268 96 55 chr13 19547729 19548420 -82324749 - HAL1 LINE L1 -1625 882 90 2575 152 53 17 chr13 19548506 19548980 -82324189 - MER44D DNA MER2_type 0 605 243 370 150 0 0 chr13 19548980 19549040 -82324129 - MSTA LTR MaLR 0 428 369 198 252 74 0 chr13 19551392 19551459 -82321710 + MIR SINE MIR 23 95 -113 1573 148 64 33 chr13 19551734 19552064 -82321105 + THE1C LTR MaLR 1 340 -35 2507 55 0 10 chr13 19552276 19552587 -82320582 + AluY SINE Alu 1 308 -3 1687 188 10 3 chr13 19552784 19553076 -82320093 - AluJb SINE Alu -18 294 1 8682 172 35 20 chr13 19553469 19554145 -82319024 - L1 LINE L1 -1788 4358 3693 2293 116 0 3 chr13 19554145 19554456 -82318713 - AluSq SINE Alu -3 310 1 8682 172 35 20 chr13 19554456 19555683 -82317486 - L1 LINE L1 -2453 3693 2427 2298 113 0 0 chr13 19555683 19555984 -82317185 + AluSq SINE Alu 1 301 -12 309 317 57 8 chr13 19557436 19557559 -82315610 + L2 LINE L2 3142 3270 -2 941 196 20 0 chr13 19557585 19557789 -82315380 + LTR55 LTR ERV 1 208 -340 239 300 100 20 chr13 19557944 19558044 -82315125 - MIR SINE MIR -64 144 37 617 231 113 25 chr13 19558325 19558563 -82314606 + MIR SINE MIR 4 262 0 23 33 0 0 chr13 19559414 19559444 -82313725 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 19562672 19562694 -82310475 + GC_rich Low_complexity Low_complexity 1 22 0 1687 147 0 8 chr13 19563464 19563722 -82309447 - AluSx SINE Alu -15 297 42 527 123 0 0 chr13 19563722 19563795 -82309374 - AluS SINE Alu -240 73 1 1057 176 66 25 chr13 19563883 19564201 -82308968 - Charlie2 DNA MER1_type 0 2862 2532 386 192 13 0 chr13 19564211 19564289 -82308880 - L1PB3 LINE L1 -94 6060 5982 408 326 67 19 chr13 19564315 19564585 -82308584 - L1M4 LINE L1 -1718 4428 4146 255 230 0 27 chr13 19564748 19564822 -82308347 + MLT1B LTR MaLR 220 291 -99 529 173 19 10 chr13 19564830 19564934 -82308235 - MLT1A1 LTR MaLR -78 287 183 12168 144 19 9 chr13 19564934 19567843 -82305326 + L1PA11 LINE L1 3262 6172 -2 232 317 92 43 chr13 19568785 19568949 -82304220 + L2 LINE L2 2885 3056 -257 205 366 40 40 chr13 19569166 19569267 -82303902 + L2 LINE L2 3169 3269 -3 234 91 0 0 chr13 19570311 19570344 -82302825 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 2777 190 44 10 chr13 19570585 19571179 -82301990 - MER90 LTR ERV1 0 614 1 1785 224 35 25 chr13 19571457 19571968 -82301201 + MER77 LTR ERV1 1 597 -8 346 250 13 0 chr13 19572213 19572289 -82300880 - L2 LINE L2 0 3272 3196 972 194 6 0 chr13 19572335 19572505 -82300664 - FRAM SINE Alu -6 170 1 2205 156 73 63 chr13 19572699 19573204 -82299965 - Tigger3b DNA MER2_type -720 511 2 919 290 107 30 chr13 19574658 19575089 -82298080 - L2 LINE L2 -1 3312 2849 21 36 0 0 chr13 19576444 19576472 -82296697 + AT_rich Low_complexity Low_complexity 1 28 0 2048 122 80 11 chr13 19577212 19577588 -82295581 + L1MA3 LINE L1 5904 6305 0 976 224 14 0 chr13 19577640 19577854 -82295315 + MER58A DNA MER1_type 1 217 -7 330 272 130 6 chr13 19578261 19578430 -82294739 - L1ME LINE L1 -358 5812 5623 307 320 128 57 chr13 19578661 19579027 -82294142 - L1ME LINE L1 -1116 5030 4639 637 152 0 9 chr13 19579104 19579209 -82293960 + FLAM_C SINE Alu 5 108 -35 1112 207 111 14 chr13 19579218 19579571 -82293598 - L1MEc LINE L1 -5594 802 416 998 126 97 6 chr13 19579579 19579754 -82293415 + PABL_A LTR ERV1 1 191 -469 886 35 0 9 chr13 19579864 19579977 -82293192 + L1PA5 LINE L1 6040 6151 -3 193 294 73 0 chr13 19580446 19580514 -82292655 + L2 LINE L2 2899 2971 -343 754 286 57 21 chr13 19581051 19581334 -82291835 + L2 LINE L2 3020 3312 -1 500 270 189 18 chr13 19581728 19581950 -82291219 + MIR SINE MIR 3 262 0 667 45 67 0 chr13 19583009 19583098 -82290071 + MER51B LTR ERV1 1 95 -282 734 146 238 0 chr13 19583098 19583249 -82289920 + MER51B-int LTR ERV1 3141 3327 -4489 * 2287 136 139 2 chr13 19583231 19583709 -82289460 + MER51B-int LTR ERV1 2829 4529 -2602 1767 87 70 4 chr13 19583697 19584049 -82289120 + MER51B-int LTR ERV1 2221 2640 -2577 * 7623 153 37 16 chr13 19584054 19586078 -82287091 + MER51B-int LTR ERV1 5758 7815 -1 2158 112 92 6 chr13 19586080 19586427 -82286742 + MER51B LTR ERV1 1 377 0 270 81 0 0 chr13 19586903 19586940 -82286229 + (TG)n Simple_repeat Simple_repeat 1 37 0 255 177 0 0 chr13 19586940 19587002 -82286167 + GA-rich Low_complexity Low_complexity 2 63 0 546 289 154 43 chr13 19587169 19587674 -82285495 + L2 LINE L2 2653 3241 -72 403 139 0 0 chr13 19587698 19587770 -82285399 - L1PA11 LINE L1 -1 6173 6102 1427 72 0 0 chr13 19587770 19587963 -82285206 + L1PA10 LINE L1 5732 5924 -244 229 250 0 0 chr13 19588326 19588386 -82284783 + (TG)n Simple_repeat Simple_repeat 2 61 0 232 218 164 73 chr13 19589221 19589331 -82283838 - MER5A DNA MER1_type -24 165 46 180 0 0 0 chr13 19589812 19589832 -82283337 + (ATTTG)n Simple_repeat Simple_repeat 2 21 0 357 174 0 0 chr13 19590099 19590168 -82283001 + (TA)n Simple_repeat Simple_repeat 2 70 0 405 258 48 24 chr13 19593170 19593294 -82279875 + MIR SINE MIR 17 143 -65 186 133 0 0 chr13 19594024 19594054 -82279115 + (GAA)n Simple_repeat Simple_repeat 1 30 0 216 329 56 35 chr13 19594188 19594331 -82278838 - MIR3 SINE MIR -5 203 58 391 326 22 22 chr13 19594466 19594604 -82278565 - MIR SINE MIR -79 183 46 26 0 0 0 chr13 19597585 19597611 -82275558 + AT_rich Low_complexity Low_complexity 1 26 0 2137 103 4 0 chr13 19597888 19598203 -82274966 - AluSx SINE Alu 0 318 3 2130 130 3 0 chr13 19598916 19599209 -82273960 + AluJb SINE Alu 1 294 -18 186 43 0 0 chr13 19599662 19599685 -82273484 + (TG)n Simple_repeat Simple_repeat 2 24 0 921 206 76 79 chr13 19600606 19600975 -82272194 + L1MC4 LINE L1 7645 8012 -30 22 0 0 0 chr13 19602529 19602551 -82270618 + AT_rich Low_complexity Low_complexity 1 22 0 354 255 29 128 chr13 19603019 19603124 -82270045 - MIR SINE MIR -45 163 135 2069 105 11 0 chr13 19603124 19603410 -82269759 - AluSx SINE Alu -19 293 5 354 255 29 128 chr13 19603410 19603530 -82269639 - MIR SINE MIR -73 135 5 980 245 56 43 chr13 19603568 19603943 -82269226 + MLT1I LTR MaLR 5 384 -25 959 150 0 0 chr13 19604399 19604546 -82268623 + AluSg/x SINE Alu 164 310 0 223 292 139 0 chr13 19606236 19606308 -82266861 - MER5C DNA MER1_type -241 83 2 744 103 8 0 chr13 19606565 19606682 -82266487 + AluSc SINE Alu 186 303 -6 3040 91 29 78 chr13 19607282 19607723 -82265446 - Tigger4(Zombi) DNA MER2_type 0 2731 2325 2198 116 3 7 chr13 19607723 19608033 -82265136 + AluSx SINE Alu 1 309 -3 3040 91 29 78 chr13 19608033 19608183 -82264986 - Tigger4(Zombi) DNA MER2_type -406 2325 2169 503 157 12 0 chr13 19608180 19608263 -82264906 - Tigger4(Zombi) DNA MER2_type -2647 84 1 * 560 268 73 97 chr13 19608549 19608734 -82264435 + L1ME4a LINE L1 5636 5824 -297 450 0 0 0 chr13 19608734 19608784 -82264385 + (TA)n Simple_repeat Simple_repeat 1 50 0 1459 69 35 5 chr13 19608786 19608989 -82264180 - L1PA10 LINE L1 -4 6164 5956 560 268 73 97 chr13 19608989 19609296 -82263873 + L1ME4a LINE L1 5825 6119 -2 212 137 0 137 chr13 19610806 19610857 -82262312 - L2 LINE L2 -5 3308 3265 259 366 30 8 chr13 19614120 19614254 -82258915 + MIR3 SINE MIR 62 198 -10 2090 119 0 0 chr13 19615226 19615503 -82257666 - AluSx SINE Alu -35 277 1 1031 204 136 52 chr13 19615923 19616056 -82257113 - MLT1C LTR MaLR -5 462 342 3805 169 20 49 chr13 19616056 19616811 -82256358 - MER44D DNA MER2_type 0 605 1 1031 204 136 52 chr13 19616811 19617103 -82256066 - MLT1C LTR MaLR -125 342 1 2228 117 49 9 chr13 19617423 19617773 -82255396 - THE1B LTR MaLR 0 364 1 474 317 53 44 chr13 19618049 19618224 -82254945 + MIR SINE MIR 28 207 -55 192 77 0 0 chr13 19618224 19618250 -82254919 + (CA)n Simple_repeat Simple_repeat 1 26 0 474 317 53 44 chr13 19618250 19618301 -82254868 + MIR SINE MIR 207 256 -6 287 165 12 106 chr13 19618618 19618703 -82254466 + LTR67 LTR ERVL 477 553 -4 1939 156 3 0 chr13 19620006 19620307 -82252862 - AluJo SINE Alu -10 302 1 380 236 11 11 chr13 19621888 19621977 -82251192 - L2 LINE L2 -1 3312 3224 270 308 44 13 chr13 19622144 19622303 -82250866 + L2 LINE L2 878 1041 -2273 1062 286 152 32 chr13 19622304 19622930 -82250239 + Charlie2a DNA MER1_type 1 701 -2161 2575 164 55 25 chr13 19622933 19623501 -82249668 - L1MC3 LINE L1 0 7785 7201 539 229 72 44 chr13 19623503 19623883 -82249286 + Charlie2a DNA MER1_type 689 1118 -1744 779 37 148 0 chr13 19623884 19623992 -82249177 + L1PA13 LINE L1 6036 6159 -4 3940 203 64 85 chr13 19624066 19624583 -82248586 + Charlie2a DNA MER1_type 1122 1648 -1214 2007 132 0 33 chr13 19624583 19624886 -82248283 + AluSx SINE Alu 1 293 -19 3940 203 64 85 chr13 19624886 19624909 -82248260 + Charlie2a DNA MER1_type 1648 1670 -1192 573 161 0 0 chr13 19624909 19625002 -82248167 + L1MD1 LINE L1 6142 6234 -8 1483 100 76 0 chr13 19625002 19625247 -82247922 + L1MA2 LINE L1 6034 6301 -3 3940 203 64 85 chr13 19625247 19626480 -82246689 + Charlie2a DNA MER1_type 1668 2860 -2 2613 310 94 60 chr13 19626484 19628405 -82244764 + L2 LINE L2 1038 3057 -215 1536 194 25 68 chr13 19628512 19628831 -82244338 - L1MDa LINE L1 -6142 398 98 2066 126 3 0 chr13 19628831 19629117 -82244052 - AluSp SINE Alu -22 291 5 1536 194 25 68 chr13 19629117 19629195 -82243974 - L1MDa LINE L1 -6442 98 18 323 278 142 21 chr13 19629281 19629962 -82243207 - L1MCa LINE L1 -3264 2865 2093 24 32 0 0 chr13 19630214 19630245 -82242924 + AT_rich Low_complexity Low_complexity 1 31 0 2104 184 52 7 chr13 19630391 19630836 -82242333 + MLT1C LTR MaLR 3 467 0 342 45 0 0 chr13 19630929 19630973 -82242196 + (TG)n Simple_repeat Simple_repeat 2 45 0 397 343 41 6 chr13 19630974 19631143 -82242026 - HAL1 LINE L1 -908 1599 1425 416 206 38 8 chr13 19631195 19631326 -82241843 - L1MCa LINE L1 -5081 1038 904 6712 61 10 13 chr13 19631429 19632949 -82240220 + L1PA7 LINE L1 4635 6151 -3 468 119 36 0 chr13 19632953 19633037 -82240132 - L1MB3 LINE L1 -2 6181 6095 520 133 56 0 chr13 19633038 19633128 -82240041 - L1MA6 LINE L1 -366 5934 5840 1695 106 26 0 chr13 19633128 19633392 -82239777 + L1MA6 LINE L1 6030 6300 0 2425 172 34 4 chr13 19633404 19633880 -82239289 - L1MB3 LINE L1 -78 6105 5616 304 261 34 17 chr13 19633893 19634012 -82239157 - L1MCa LINE L1 -5281 838 718 589 279 123 42 chr13 19634016 19634375 -82238794 - L1MCa LINE L1 -5456 663 276 297 0 0 0 chr13 19634454 19634487 -82238682 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 270 237 7 chr13 19634513 19634665 -82238504 + L2 LINE L2 3126 3312 -1 977 201 5 34 chr13 19635494 19635698 -82237471 - MER58A DNA MER1_type 0 224 27 1057 203 53 9 chr13 19635868 19636095 -82237074 - MLT1F1 LTR MaLR -328 239 3 * 4282 192 69 33 chr13 19636095 19637173 -82235996 - Charlie1a DNA MER1_type -338 1117 1 255 103 0 0 chr13 19637361 19637400 -82235769 + (TCC)n Simple_repeat Simple_repeat 2 40 0 468 51 0 0 chr13 19637409 19637468 -82235701 + (TTTTA)n Simple_repeat Simple_repeat 1 59 0 1485 186 3 69 chr13 19637469 19637512 -82235657 - L1MB1 LINE L1 -7 6161 6117 2345 94 0 0 chr13 19637512 19637809 -82235360 - AluY SINE Alu -14 297 1 1485 186 3 69 chr13 19637809 19637844 -82235325 - L1MB1 LINE L1 -51 6117 6081 2232 107 0 3 chr13 19637844 19638142 -82235027 - AluSg SINE Alu -13 297 1 1485 186 3 69 chr13 19638142 19638438 -82234731 - L1MB1 LINE L1 -87 6081 5811 407 168 141 74 chr13 19639317 19639378 -82233791 - MER69 DNA AcHobo 0 2526 2471 3258 122 33 15 chr13 19639378 19639896 -82233273 + MER1A DNA MER1_type 1 527 0 407 168 141 74 chr13 19639896 19639983 -82233186 - MER69 DNA AcHobo -55 2471 2368 22 35 0 0 chr13 19640331 19640360 -82232809 + AT_rich Low_complexity Low_complexity 1 29 0 194 357 133 36 chr13 19641261 19641457 -82231712 - L3b LINE CR1 -34 1549 1335 201 226 19 38 chr13 19641460 19641513 -82231656 - L2 LINE L2 -8 3264 3213 255 246 148 8 chr13 19641878 19642000 -82231169 - L3b LINE CR1 -338 1245 1107 265 185 111 74 chr13 19642031 19642180 -82230989 + MIR3 SINE MIR 41 193 -15 233 216 49 39 chr13 19642508 19642610 -82230559 - HAL1b LINE L1 -34 1314 1212 276 294 184 65 chr13 19642905 19643242 -82229927 + L2 LINE L2 2014 2390 -924 224 292 139 22 chr13 19643836 19643973 -82229196 - MIR SINE MIR -50 212 60 534 318 69 50 chr13 19644069 19644531 -82228638 + L2 LINE L2 2449 2919 -395 314 202 158 53 chr13 19644506 19644620 -82228549 + L2 LINE L2 3179 3304 -9 * 808 234 45 37 chr13 19645277 19645521 -82227648 + MIR SINE MIR 17 262 0 427 246 136 45 chr13 19645538 19645802 -82227367 - MLT1J LTR MaLR 0 511 224 2343 68 3 65 chr13 19646978 19647302 -82225867 + AluSp SINE Alu 1 304 -9 401 200 73 113 chr13 19648132 19648282 -82224887 + LTR33 LTR ERVL 33 176 -345 1773 105 22 99 chr13 19648600 19648949 -82224220 + AluYb8 SINE Alu 1 325 0 2289 130 50 38 chr13 19648995 19649350 -82223819 + MSTA LTR MaLR 1 363 -65 2176 120 10 0 chr13 19649350 19649658 -82223511 - AluSx SINE Alu -1 311 1 2289 130 50 38 chr13 19649658 19649725 -82223444 + MSTA LTR MaLR 363 428 0 7188 163 121 8 chr13 19649727 19651146 -82222023 + MSTA-int LTR MaLR 3 1580 0 2739 109 46 5 chr13 19651146 19651557 -82221612 + MSTA LTR MaLR 1 428 0 309 272 158 6 chr13 19651704 19651862 -82221307 + LTR33 LTR ERVL 340 521 0 190 318 56 37 chr13 19652201 19652308 -82220861 - MIR SINE MIR -70 192 84 1409 165 15 105 chr13 19653465 19653866 -82219303 - MLT1A1 LTR MaLR 0 365 1 384 343 200 15 chr13 19653870 19654666 -82218503 + L2 LINE L2 2128 3091 -181 614 196 60 114 chr13 19654792 19655144 -82218025 - HAL1 LINE L1 -6 2501 2169 347 263 63 86 chr13 19655194 19655369 -82217800 - HAL1 LINE L1 -664 1843 1673 1818 123 98 11 chr13 19655389 19655665 -82217504 + AluJo SINE Alu 1 300 -12 33 56 0 0 chr13 19655679 19655733 -82217436 + AT_rich Low_complexity Low_complexity 1 54 0 404 211 23 23 chr13 19655776 19655947 -82217222 + A-rich Low_complexity Low_complexity 3 173 0 233 288 0 0 chr13 19655955 19656014 -82217155 + GA-rich Low_complexity Low_complexity 3 61 0 2043 84 40 7 chr13 19656133 19656467 -82216702 - AluY SINE Alu 0 343 1 1886 243 151 61 chr13 19656476 19657874 -82215295 - HAL1 LINE L1 -890 1617 94 244 190 114 51 chr13 19658020 19658099 -82215070 + LTR48B LTR ERV1 1 84 -560 1289 169 14 1 chr13 19658143 19658395 -82214774 + MER39 LTR ERV1 385 487 -55 425 123 0 0 chr13 19658488 19658553 -82214616 + MER34C LTR ERV1 37 101 -484 348 202 43 72 chr13 19658707 19658986 -82214183 + MER34 LTR ERV1 390 527 -15 708 177 8 0 chr13 19658986 19659110 -82214059 - MER5B DNA MER1_type -50 128 4 270 257 66 93 chr13 19659967 19660123 -82213046 + MIR SINE MIR 37 189 -28 1048 153 16 26 chr13 19660211 19660400 -82212769 - MER5A DNA MER1_type -2 187 1 4079 87 7 0 chr13 19660813 19661363 -82211806 - MER41A LTR ERV1 0 554 1 243 401 38 38 chr13 19661452 19661584 -82211585 - L2 LINE L2 -20 3252 3121 617 231 81 6 chr13 19661797 19661957 -82211212 - MIR SINE MIR -6 256 85 2027 102 11 4 chr13 19662220 19662495 -82210674 + AluSc SINE Alu 1 277 -32 216 0 0 0 chr13 19662497 19662521 -82210648 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 654 176 183 20 chr13 19662881 19663034 -82210135 + MER5B DNA MER1_type 1 178 0 2211 121 21 9 chr13 19663671 19664010 -82209159 - MER61A LTR ERV1 0 343 1 718 246 58 45 chr13 19664177 19664203 -82208966 + MIR SINE MIR 9 33 -229 2339 92 0 0 chr13 19664203 19664498 -82208671 + AluSq SINE Alu 1 295 -18 718 246 58 45 chr13 19664498 19664695 -82208474 + MIR SINE MIR 33 235 -27 214 337 20 20 chr13 19665028 19665126 -82208043 + MER5B DNA MER1_type 1 98 -80 23 0 0 0 chr13 19666265 19666288 -82206881 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr13 19666326 19666361 -82206808 + AT_rich Low_complexity Low_complexity 1 35 0 474 146 85 12 chr13 19666373 19666455 -82206714 - AluJ/FLAM SINE Alu -222 90 3 1664 184 20 50 chr13 19666701 19667103 -82206066 + L1ME1 LINE L1 5444 5833 -333 239 140 20 0 chr13 19667901 19667951 -82205218 + GA-rich Low_complexity Low_complexity 2 52 0 2018 156 125 13 chr13 19667956 19668341 -82204828 - MSTA LTR MaLR 0 428 1 408 107 40 0 chr13 19668401 19668476 -82204693 + LTR54B LTR ERV1 400 477 -21 2006 96 4 8 chr13 19668479 19668740 -82204429 - AluY SINE Alu -51 260 1 862 141 96 15 chr13 19669004 19669203 -82203966 + L1MC3 LINE L1 7571 7785 0 2206 115 48 28 chr13 19669954 19670311 -82202858 - THE1B LTR MaLR 0 364 1 234 244 9 96 chr13 19670359 19670415 -82202754 - MER103 DNA DNA -59 107 64 2097 116 0 30 chr13 19670415 19670718 -82202451 - AluSx SINE Alu -18 294 1 234 244 9 96 chr13 19670718 19670776 -82202393 - MER103 DNA DNA -102 64 3 421 211 78 47 chr13 19670939 19671067 -82202102 + MIR SINE MIR 33 164 -98 8981 107 13 1 chr13 19671152 19672423 -82200746 + HSMAR1 DNA Mariner 1 1287 0 431 302 32 58 chr13 19674220 19674409 -82198760 - MIR SINE MIR -8 254 71 186 147 0 29 chr13 19674503 19674537 -82198632 - MER5C DNA MER1_type -259 65 33 319 265 209 36 chr13 19675632 19675828 -82197341 + MIR SINE MIR 20 249 -13 3619 169 63 9 chr13 19676582 19677267 -82195902 + MER72 LTR ERV1 1 722 0 199 282 113 14 chr13 19677629 19677700 -82195469 - L2 LINE L2 -1 3312 3235 702 223 37 32 chr13 19677939 19678127 -82195042 + MER5A DNA MER1_type 1 189 0 21 0 0 0 chr13 19678153 19678174 -82194995 + AT_rich Low_complexity Low_complexity 1 21 0 258 244 51 0 chr13 19678608 19678686 -82194483 + L1MC4 LINE L1 6622 6703 -1339 497 55 14 0 chr13 19678705 19678778 -82194391 + (TA)n Simple_repeat Simple_repeat 1 74 0 242 209 0 0 chr13 19678778 19678821 -82194348 + MER5A DNA MER1_type 137 179 -10 620 293 50 50 chr13 19679092 19679375 -82193794 + MLT1I LTR MaLR 109 391 -18 905 287 47 40 chr13 19680221 19680746 -82192423 - L1ME3A LINE L1 -342 5828 5294 1895 152 24 0 chr13 19680746 19681035 -82192134 + AluSx SINE Alu 1 296 -16 905 287 47 40 chr13 19681035 19681338 -82191831 - L1ME3A LINE L1 -876 5294 4995 754 253 6 0 chr13 19681678 19681848 -82191321 + MLT1D LTR MaLR 1 171 -334 652 120 0 0 chr13 19683432 19683532 -82189637 + L1 LINE L1 3887 3986 -2160 4129 157 84 12 chr13 19684018 19684499 -82188670 - L1MA8 LINE L1 -99 6192 5747 2048 139 32 32 chr13 19684499 19684872 -82188297 + THE1C LTR MaLR 1 373 -2 4129 157 84 12 chr13 19684872 19685828 -82187341 - L1MA8 LINE L1 -544 5747 4643 2240 166 27 64 chr13 19687346 19687480 -82185689 + MER74A LTR ERVL 5 142 -416 1737 170 7 3 chr13 19687480 19687774 -82185395 - AluJo SINE Alu -7 305 11 2240 166 27 64 chr13 19687774 19688187 -82184982 + MER74A LTR ERVL 142 532 -26 23 68 0 0 chr13 19688828 19688872 -82184297 + AT_rich Low_complexity Low_complexity 1 44 0 4113 156 19 56 chr13 19689222 19689442 -82183727 - MER54B LTR ERVL 0 793 567 2045 144 36 30 chr13 19689442 19689804 -82183365 + THE1B LTR MaLR 1 364 0 4113 156 19 56 chr13 19689804 19690406 -82182763 - MER54B LTR ERVL -226 567 1 22 0 0 0 chr13 19690758 19690780 -82182389 + AT_rich Low_complexity Low_complexity 1 22 0 677 168 27 27 chr13 19690881 19691030 -82182139 - L1ME LINE L1 -356 5810 5662 2498 230 63 69 chr13 19691076 19691268 -82181901 + L1MDa LINE L1 2294 2486 -4054 1585 204 14 17 chr13 19691268 19691562 -82181607 + AluJo SINE Alu 1 293 -19 2498 230 63 69 chr13 19691562 19692478 -82180691 + L1MDa LINE L1 2486 3398 -3142 1691 174 6 32 chr13 19692478 19692794 -82180375 - AluJo SINE Alu -4 308 1 2498 230 63 69 chr13 19692794 19693137 -82180032 + L1MDa LINE L1 3398 3742 -2798 2206 63 0 4 chr13 19693504 19693772 -82179397 + AluY SINE Alu 29 295 -16 21 0 0 0 chr13 19694177 19694198 -82178971 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chr13 19694483 19694552 -82178617 + AT_rich Low_complexity Low_complexity 1 69 0 307 329 88 52 chr13 19695050 19695320 -82177849 + L1MEd LINE L1 1081 1340 -1561 2218 120 7 0 chr13 19695320 19695620 -82177549 - AluSx SINE Alu -10 302 1 307 329 88 52 chr13 19695620 19695935 -82177234 + L1MEd LINE L1 1340 1775 -1126 * 331 302 107 12 chr13 19695906 19696075 -82177094 + L1MEd LINE L1 2437 2621 -3919 654 197 15 0 chr13 19696089 19696226 -82176943 - MSTD LTR MaLR 0 396 258 631 188 36 43 chr13 19696269 19696407 -82176762 - MSTC LTR MaLR -258 138 2 420 294 112 13 chr13 19696423 19696957 -82176212 + L1MEd LINE L1 2664 3250 -3290 314 275 68 36 chr13 19697021 19697494 -82175675 + L1MEd LINE L1 3367 3854 -2686 319 205 13 0 chr13 19697705 19697783 -82175386 - MER116 DNA Mariner 0 80 2 351 286 76 65 chr13 19697785 19698192 -82174977 + L1M4 LINE L1 4468 4882 -1264 1651 160 22 60 chr13 19698192 19698510 -82174659 + AluJo SINE Alu 5 310 -2 351 286 76 65 chr13 19698510 19698577 -82174592 + L1M4 LINE L1 4882 4947 -1199 207 0 0 0 chr13 19698670 19698693 -82174476 + (TG)n Simple_repeat Simple_repeat 1 23 0 266 309 52 7 chr13 19698830 19698966 -82174203 + HAL1 LINE L1 13 154 -2353 2423 277 117 28 chr13 19698976 19700387 -82172782 + HAL1 LINE L1 273 1809 -698 2390 118 3 3 chr13 19700589 19700946 -82172223 + THE1B LTR MaLR 7 363 -1 1835 251 131 9 chr13 19700955 19701604 -82171565 - L2 LINE L2 -1106 2208 1481 315 0 0 0 chr13 19703368 19703403 -82169766 + (CA)n Simple_repeat Simple_repeat 2 36 0 1771 248 68 20 chr13 19703710 19704456 -82168713 + HAL1b LINE L1 69 850 -498 186 395 80 5 chr13 19704878 19705078 -82168091 + L3 LINE CR1 64 278 -1299 516 280 74 4 chr13 19705119 19705290 -82167879 - MIR SINE MIR -56 206 28 1802 191 17 56 chr13 19705309 19705770 -82167399 - LTR47B LTR ERVL 0 443 1 252 317 83 28 chr13 19705804 19705949 -82167220 + L3 LINE CR1 345 497 -1080 248 246 0 0 chr13 19706059 19706124 -82167045 + T-rich Low_complexity Low_complexity 1 65 0 2115 122 6 3 chr13 19706126 19706437 -82166732 - AluJo SINE Alu 0 312 1 2112 279 126 13 chr13 19706497 19707214 -82165955 + L3 LINE CR1 581 1378 -199 2085 146 0 0 chr13 19707953 19708248 -82164921 + AluSx SINE Alu 1 295 -17 2937 233 59 11 chr13 19709460 19710259 -82162910 - L1ME3 LINE L1 -6 6156 5320 2771 211 44 32 chr13 19710281 19711009 -82162160 - L1ME1 LINE L1 -10 6156 5420 2278 69 23 13 chr13 19711026 19711329 -82161840 + AluY SINE Alu 1 306 -5 1315 221 24 68 chr13 19712256 19712682 -82160487 + MLT2D LTR ERVL 8 414 0 225 331 78 19 chr13 19713986 19714140 -82159029 - MIR SINE MIR -51 211 49 658 296 36 32 chr13 19714828 19715078 -82158091 - MIR SINE MIR 0 262 12 184 291 39 78 chr13 19716169 19716272 -82156897 - L2 LINE L2 -1 3271 3173 4957 198 38 33 chr13 19717030 19719155 -82154014 - L1MB5 LINE L1 -6 6168 4025 1996 109 65 14 chr13 19719155 19719448 -82153721 - AluSx SINE Alu -4 308 1 4957 198 38 33 chr13 19719448 19719643 -82153526 - L1MB5 LINE L1 -2149 4025 3832 357 215 234 6 chr13 19719678 19719836 -82153333 - MIR SINE MIR -62 200 7 379 307 18 9 chr13 19719860 19719974 -82153195 - L2 LINE L2 -2 3311 3197 2572 234 19 33 chr13 19719992 19720744 -82152425 - L1ME1 LINE L1 -165 6070 5344 2090 117 3 25 chr13 19720744 19721060 -82152109 + AluSx SINE Alu 1 309 -3 2572 234 19 33 chr13 19721060 19721444 -82151725 - L1ME1 LINE L1 -891 5344 4956 2234 147 38 20 chr13 19721444 19721691 -82151478 + L1M2 LINE L1 4895 5136 -1155 2208 91 11 0 chr13 19721691 19722002 -82151167 + AluSp SINE Alu 1 314 0 2234 147 38 20 chr13 19722002 19722435 -82150734 + L1M2 LINE L1 5136 5593 -698 * 3950 244 65 47 chr13 19722434 19724170 -82148999 - L1ME1 LINE L1 -1808 4407 2642 263 242 93 46 chr13 19724157 19724223 -82148946 - L1ME1 LINE L1 -5265 1131 1070 * 2153 116 3 7 chr13 19724223 19724517 -82148652 - AluSx SINE Alu -19 293 1 263 242 93 46 chr13 19724517 19724644 -82148525 - L1ME1 LINE L1 -5326 1070 929 324 329 12 33 chr13 19724779 19724961 -82148208 - L2 LINE L2 -333 2980 2799 483 310 60 25 chr13 19724969 19725253 -82147916 - MLT1I LTR MaLR -8 401 108 757 176 23 0 chr13 19725452 19725583 -82147586 + AluJ SINE Alu 11 144 -168 2180 121 0 13 chr13 19725584 19725899 -82147270 + AluY SINE Alu 1 311 0 199 376 69 0 chr13 19726161 19726262 -82146907 + L3 LINE CR1 1398 1505 -72 1078 273 125 30 chr13 19726278 19726813 -82146356 + Charlie2 DNA MER1_type 45 630 -2152 402 214 31 0 chr13 19726813 19726911 -82146258 + L1PA10 LINE L1 5963 6063 -105 216 333 93 19 chr13 19727311 19727419 -82145750 + L2 LINE L2 3121 3236 -36 286 310 8 70 chr13 19728664 19728793 -82144376 + MIR3 SINE MIR 82 202 -6 1042 172 0 0 chr13 19728794 19728957 -82144212 + AluJ SINE Alu 135 297 -15 299 241 0 37 chr13 19728973 19729081 -82144088 + L1ME1 LINE L1 5175 5278 -868 3159 213 37 22 chr13 19729167 19730000 -82143169 + L1ME1 LINE L1 5297 6142 -24 753 203 0 0 chr13 19730019 19730152 -82143017 - FLAM_C SINE Alu 0 133 1 1716 140 7 57 chr13 19730154 19730454 -82142715 - AluJb SINE Alu -19 293 9 1220 137 64 4 chr13 19730474 19730723 -82142446 - L1MA4 LINE L1 -6 6294 6031 254 283 35 26 chr13 19732279 19732392 -82140777 - MIR SINE MIR -1 261 148 5049 121 5 16 chr13 19732393 19732578 -82140591 + L1PA16 LINE L1 5334 5519 -647 1617 208 14 14 chr13 19732578 19732872 -82140297 + AluJb SINE Alu 1 294 -18 5049 121 5 16 chr13 19732872 19733522 -82139647 + L1PA16 LINE L1 5519 6160 -6 205 244 0 0 chr13 19733664 19733705 -82139464 + GA-rich Low_complexity Low_complexity 3 43 0 967 254 14 161 chr13 19734736 19735389 -82137780 + L2 LINE L2 967 1523 -1791 209 383 25 0 chr13 19735412 19735493 -82137676 - L2 LINE L2 -74 3198 3116 423 311 47 14 chr13 19736007 19736155 -82137014 + MIR3 SINE MIR 47 199 -9 252 0 0 0 chr13 19736770 19736798 -82136371 + (T)n Simple_repeat Simple_repeat 1 28 0 552 265 158 43 chr13 19736991 19737225 -82135944 - MIR SINE MIR -1 261 1 437 230 56 32 chr13 19737285 19737411 -82135758 + L2 LINE L2 3184 3312 -1 488 278 48 32 chr13 19738407 19738594 -82134575 - MIR SINE MIR 0 262 73 618 296 48 5 chr13 19741068 19741274 -82131895 + MIR SINE MIR 47 261 -1 271 108 0 0 chr13 19743189 19743251 -82129918 - Alu SINE Alu 0 307 246 425 351 49 0 chr13 19744974 19745159 -82128010 - MIR SINE MIR -68 194 1 542 308 32 11 chr13 19745821 19746006 -82127163 + MER5A DNA MER1_type 1 189 0 27 29 0 0 chr13 19746038 19746072 -82127097 + AT_rich Low_complexity Low_complexity 1 34 0 1511 243 14 22 chr13 19746188 19746682 -82126487 + L1M4 LINE L1 4488 4977 -1169 524 322 40 10 chr13 19746682 19746881 -82126288 + L2 LINE L2 3107 3311 -2 1257 228 138 50 chr13 19746900 19747624 -82125545 - HAL1b LINE L1 -50 1298 511 2757 267 49 43 chr13 19747666 19747851 -82125318 + L1MEc LINE L1 81 263 -6133 1901 125 52 35 chr13 19747851 19748220 -82124949 - THE1C LTR MaLR 0 375 1 2757 267 49 43 chr13 19748220 19749395 -82123774 + L1MEc LINE L1 263 1449 -4947 486 291 81 44 chr13 19749405 19749835 -82123334 - HAL1b LINE L1 -833 515 70 3996 146 20 14 chr13 19752501 19753234 -82119935 + L1MA8 LINE L1 5543 6280 -11 263 273 16 91 chr13 19753473 19753594 -82119575 - MIR SINE MIR -23 239 128 2219 195 57 13 chr13 19753769 19754297 -82118872 + MER89 LTR ERV1 4 554 -5 688 271 41 14 chr13 19755643 19755864 -82117305 - MIR SINE MIR -18 244 18 464 343 39 23 chr13 19755883 19756192 -82116977 + L2 LINE L2 2590 2903 -411 606 316 53 23 chr13 19756701 19757002 -82116167 - LTR16A LTR ERVL -119 331 22 1178 122 33 0 chr13 19757024 19757204 -82115965 + MER5A DNA MER1_type 1 186 -3 402 275 56 28 chr13 19758053 19758195 -82114974 + MER5A DNA MER1_type 21 166 -23 281 292 34 0 chr13 19758239 19758328 -82114841 - MER5A DNA MER1_type -84 105 14 185 405 38 0 chr13 19758438 19758569 -82114600 + L2 LINE L2 2766 2901 -413 207 204 0 0 chr13 19758581 19758625 -82114544 + (CA)n Simple_repeat Simple_repeat 2 45 0 683 230 19 0 chr13 19758810 19758971 -82114198 - L1PB4 LINE L1 0 6156 5993 1806 182 8 32 chr13 19759859 19760233 -82112936 + MLT1A1 LTR MaLR 1 365 0 545 266 76 19 chr13 19760874 19761032 -82112137 - MER5B DNA MER1_type -9 169 3 584 265 131 64 chr13 19761192 19761679 -82111490 + LTR67 LTR ERVL 29 548 -9 457 276 21 7 chr13 19762446 19762591 -82110578 + MLT1F1 LTR MaLR 313 459 -108 278 333 59 20 chr13 19762930 19763032 -82110137 + L2 LINE L2 3153 3258 -14 347 212 24 12 chr13 19763624 19763709 -82109460 + L1ME1 LINE L1 4884 4969 -1177 1969 249 72 11 chr13 19763710 19764236 -82108933 + MLT1F1 LTR MaLR 2 559 -8 2506 225 62 28 chr13 19764238 19765304 -82107865 + L1ME1 LINE L1 4963 6064 -102 1556 218 88 6 chr13 19765304 19765666 -82107503 + MSTD LTR MaLR 5 396 0 2506 225 62 28 chr13 19765666 19765768 -82107401 + L1ME1 LINE L1 6064 6161 -5 260 79 0 0 chr13 19766522 19766560 -82106609 - AluY SINE Alu -219 82 45 228 108 15 62 chr13 19766588 19766653 -82106516 + (TTTC)n Simple_repeat Simple_repeat 4 65 0 694 258 18 53 chr13 19766698 19766923 -82106246 + MIR SINE MIR 17 233 -29 335 319 120 24 chr13 19767034 19767250 -82105919 - MIR SINE MIR -13 195 11 342 45 0 0 chr13 19767384 19767428 -82105741 + (CA)n Simple_repeat Simple_repeat 2 45 0 348 278 119 11 chr13 19768161 19768352 -82104817 - MIR3 SINE MIR -21 241 26 279 0 42 42 chr13 19768399 19768447 -82104722 + (CAAAAA)n Simple_repeat Simple_repeat 6 53 0 192 77 0 0 chr13 19768546 19768572 -82104597 + (CA)n Simple_repeat Simple_repeat 2 27 0 1961 171 14 22 chr13 19769085 19769453 -82103716 + MLT1A1 LTR MaLR 1 365 0 252 300 25 0 chr13 19769740 19769820 -82103349 - L2 LINE L2 0 3272 3191 758 137 25 50 chr13 19769820 19769981 -82103188 - Tigger7 DNA MER2_type 0 2491 2335 2700 176 26 20 chr13 19770072 19770617 -82102552 - Tigger7 DNA MER2_type -1911 576 29 405 251 18 114 chr13 19770693 19770860 -82102309 - L2 LINE L2 -181 3091 2941 313 288 0 0 chr13 19770984 19771057 -82102112 - L2 LINE L2 0 3272 3200 380 254 71 24 chr13 19772506 19772632 -82100537 + FLAM_C SINE Alu 1 132 -1 198 243 117 36 chr13 19773554 19773665 -82099504 - MIR SINE MIR -56 206 87 250 314 33 33 chr13 19773665 19773786 -82099383 + L1ME LINE L1 5619 5739 -382 2086 125 0 0 chr13 19775342 19775631 -82097538 + AluSx SINE Alu 1 289 -23 231 255 43 96 chr13 19776048 19776142 -82097027 + MIR SINE MIR 59 147 -115 460 343 29 29 chr13 19776602 19776882 -82096287 - L2 LINE L2 -163 3150 2871 21 0 0 0 chr13 19777304 19777325 -82095844 + AT_rich Low_complexity Low_complexity 1 21 0 349 174 163 0 chr13 19777384 19777476 -82095693 - L2 LINE L2 -10 3303 3197 1197 253 83 41 chr13 19778215 19778626 -82094543 + L2 LINE L2 2886 3313 0 1780 120 0 4 chr13 19779011 19779291 -82093878 - AluSx SINE Alu 0 314 36 329 198 86 0 chr13 19779740 19779821 -82093348 - MER3 DNA MER1_type 0 209 122 4385 254 44 59 chr13 19779822 19781730 -82091439 + L1MEc LINE L1 35 1913 -4483 2505 237 41 26 chr13 19781750 19782942 -82090227 + L1MEc LINE L1 1878 3047 -3168 777 283 131 52 chr13 19783108 19783627 -82089542 + MER21B LTR ERV1 155 714 -149 2241 236 48 36 chr13 19783656 19783833 -82089336 + L1MEc LINE L1 3051 3224 -2991 2211 127 3 3 chr13 19783833 19784141 -82089028 + AluSx SINE Alu 1 308 -4 2241 236 48 36 chr13 19784141 19785150 -82088019 + L1MEc LINE L1 3224 4290 -1925 240 257 9 46 chr13 19785180 19785212 -82087957 + L1MEc LINE L1 4361 4393 -1822 1859 142 42 0 chr13 19785212 19785500 -82087669 + AluJo SINE Alu 1 300 -12 240 257 9 46 chr13 19785500 19785576 -82087593 + L1MEc LINE L1 4393 4465 -1750 455 201 117 7 chr13 19785886 19786040 -82087129 + LTR50 LTR ERVL 23 193 -602 2227 108 10 0 chr13 19786066 19786363 -82086806 - AluSp SINE Alu -13 300 1 911 195 83 10 chr13 19786383 19786584 -82086585 - MIR SINE MIR -5 257 41 258 244 23 58 chr13 19787954 19788040 -82085129 - L2 LINE L2 -44 3228 3146 244 319 22 11 chr13 19788203 19788294 -82084875 + MIR SINE MIR 13 104 -158 378 184 0 0 chr13 19788604 19788680 -82084489 + (CA)n Simple_repeat Simple_repeat 2 77 0 196 402 0 0 chr13 19789166 19789248 -82083921 + L2 LINE L2 2589 2670 -644 301 338 96 15 chr13 19789657 19789793 -82083376 + L2 LINE L2 3126 3272 0 251 272 88 44 chr13 19790499 19790613 -82082556 - MIR3 SINE MIR -19 189 71 312 248 38 30 chr13 19791752 19791885 -82081284 + MER113 DNA MER1_type? 3 136 -385 359 226 71 0 chr13 19792141 19792225 -82080944 + L1MC4 LINE L1 6614 6703 -1339 225 0 0 0 chr13 19792225 19792250 -82080919 + (TA)n Simple_repeat Simple_repeat 2 26 0 372 276 24 24 chr13 19792645 19792779 -82080390 + MLT1I LTR MaLR 58 223 -232 544 228 86 73 chr13 19793547 19793780 -82079389 - L1MC4 LINE L1 -306 7736 7501 25596 28 0 1 chr13 19794276 19798122 -82075047 + L1PA3 LINE L1 2326 6170 0 3148 194 51 28 chr13 19798164 19798606 -82074563 + L1MA4 LINE L1 2011 2441 -4407 2284 152 5 13 chr13 19798606 19798982 -82074187 - THE1C LTR MaLR -2 373 1 3148 194 51 28 chr13 19798982 19799493 -82073676 + L1MA4 LINE L1 2441 2986 -3862 1065 178 0 0 chr13 19799495 19799669 -82073500 + FRAM SINE Alu 1 173 -3 8661 192 25 10 chr13 19799669 19801740 -82071429 + L1MA4 LINE L1 2978 5079 -1769 2463 176 46 11 chr13 19801768 19802359 -82070810 + L1MA4 LINE L1 6309 6971 -31 1983 124 0 0 chr13 19802359 19802634 -82070535 - AluSx SINE Alu -3 309 35 2463 176 46 11 chr13 19802634 19802660 -82070509 + L1MA4 LINE L1 6971 6995 -7 189 274 174 44 chr13 19802901 19803171 -82069998 - L2 LINE L2 -654 2660 2356 644 36 12 0 chr13 19803184 19803267 -82069902 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 5767 202 27 30 chr13 19803267 19805662 -82067507 - L1M1 LINE L1 -3946 2382 6 233 276 110 68 chr13 19807286 19807449 -82065720 + L2 LINE L2 2858 3027 -245 1955 250 36 18 chr13 19807460 19807568 -82065601 + L1MA4 LINE L1 17 122 -7443 2342 92 3 13 chr13 19807568 19807883 -82065286 + AluSx SINE Alu 1 312 0 1955 250 36 18 chr13 19807883 19808326 -82064843 + L1MA4 LINE L1 122 578 -6987 1171 248 16 9 chr13 19808472 19808787 -82064382 - L1M1 LINE L1 -5467 2098 1782 3757 210 29 20 chr13 19808804 19809868 -82063301 + L1MA4 LINE L1 3796 4869 -2696 39707 62 5 1 chr13 19809868 19815993 -82057176 + L1PA5 LINE L1 1 6150 -4 8576 166 21 25 chr13 19816009 19818660 -82054509 + L1MA4 LINE L1 4856 7489 -230 207 140 18 211 chr13 19819180 19819294 -82053875 + MER91C DNA MER1_type 17 108 -32 588 262 85 0 chr13 19819613 19819777 -82053392 - MIR SINE MIR -6 256 79 7624 190 30 41 chr13 19819850 19821411 -82051758 + L1M2 LINE L1 3313 4835 -2730 2367 93 0 10 chr13 19821411 19821721 -82051448 + AluSx SINE Alu 1 307 -5 7624 190 30 41 chr13 19821721 19822347 -82050822 + L1M2 LINE L1 4835 5467 -2098 3127 153 19 5 chr13 19822357 19823178 -82049991 + L1M2 LINE L1 6378 7205 -505 251 304 0 0 chr13 19823179 19823235 -82049934 - Tigger3(Golem) DNA MER2_type -1 3028 2973 2185 127 0 0 chr13 19823235 19823535 -82049634 - AluSx SINE Alu -12 300 1 2358 61 0 10 chr13 19823538 19823835 -82049334 - AluY SINE Alu -17 294 1 351 135 144 58 chr13 19823857 19823961 -82049208 - Tigger3(Golem) DNA MER2_type -155 2874 2762 216 316 173 12 chr13 19823961 19824066 -82049103 - L2 LINE L2 -786 2528 2441 252 0 0 0 chr13 19824066 19824094 -82049075 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 216 316 173 12 chr13 19824094 19824156 -82049013 - L2 LINE L2 -873 2441 2334 509 283 60 5 chr13 19824255 19824439 -82048730 + MIR SINE MIR 65 258 -4 181 226 19 19 chr13 19824552 19824605 -82048564 + L3 LINE CR1 1291 1343 -234 1767 191 37 29 chr13 19824667 19824776 -82048393 - MER63C DNA MER1_type -132 928 821 2345 90 3 3 chr13 19824776 19825087 -82048082 + AluSx SINE Alu 1 311 -1 1767 191 37 29 chr13 19825087 19825385 -82047784 - MER63C DNA MER1_type -239 821 518 1602 180 30 33 chr13 19825393 19825726 -82047443 + MER58B DNA MER1_type 9 340 -1 1147 188 58 14 chr13 19825726 19826176 -82046993 - MER63C DNA MER1_type -403 527 22 1945 113 45 3 chr13 19826176 19826468 -82046701 - AluSx SINE Alu -8 304 1 249 288 0 0 chr13 19828359 19828432 -82044737 + (TA)n Simple_repeat Simple_repeat 1 73 0 180 314 0 0 chr13 19828954 19829005 -82044164 - L2 LINE L2 -215 3057 3007 312 264 35 11 chr13 19829019 19829106 -82044063 + MIR SINE MIR 9 97 -165 338 258 129 45 chr13 19829117 19829272 -82043897 - MIR SINE MIR -6 256 89 616 245 170 0 chr13 19830463 19830622 -82042547 - MER5A DNA MER1_type 0 189 4 2087 141 3 3 chr13 19831175 19831481 -82041688 - AluJb SINE Alu -6 306 1 600 128 0 21 chr13 19831606 19831700 -82041469 + AluJ/FLAM SINE Alu 1 92 -220 465 138 0 0 chr13 19831727 19831807 -82041362 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1029 105 11 22 chr13 19831807 19831988 -82041181 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2674 218 37 48 chr13 19832088 19832150 -82041019 + L1ME1 LINE L1 4716 4777 -1389 2182 96 0 0 chr13 19832150 19832459 -82040710 + AluSx SINE Alu 10 318 0 2674 218 37 48 chr13 19832459 19833566 -82039603 + L1ME1 LINE L1 4777 5873 -293 2211 85 3 0 chr13 19833566 19833876 -82039293 + AluSp SINE Alu 1 311 0 2674 218 37 48 chr13 19833876 19834145 -82039024 + L1ME1 LINE L1 5873 6143 -23 549 239 13 19 chr13 19834146 19834301 -82038868 - MER3 DNA MER1_type -55 154 1 305 322 121 19 chr13 19835650 19836001 -82037168 + L2 LINE L2 2649 3068 -204 594 133 29 0 chr13 19836963 19837068 -82036101 - L1MA6 LINE L1 -224 6076 5969 * 642 196 184 0 chr13 19837063 19837231 -82035938 + L1MA6 LINE L1 6093 6291 -9 483 270 73 40 chr13 19837702 19837899 -82035270 - MIR SINE MIR -6 256 53 256 288 36 78 chr13 19837979 19838195 -82034974 - L2 LINE L2 -964 2350 2096 1558 195 10 13 chr13 19838195 19838502 -82034667 + AluJo SINE Alu 1 306 -6 256 288 36 78 chr13 19838502 19838535 -82034634 - L2 LINE L2 -1218 2096 2063 271 318 45 27 chr13 19841773 19841883 -82031286 + L2 LINE L2 2985 3096 -176 212 159 0 45 chr13 19842058 19842102 -82031067 + L2 LINE L2 3218 3259 -13 258 280 72 106 chr13 19842297 19842533 -82030636 + L2 LINE L2 2522 2749 -565 309 172 0 0 chr13 19842553 19842617 -82030552 + (CA)n Simple_repeat Simple_repeat 1 64 0 191 363 37 65 chr13 19842693 19842908 -82030261 + L2 LINE L2 2853 3061 -252 504 250 9 102 chr13 19843057 19843273 -82029896 + L2 LINE L2 3027 3222 -91 1293 226 35 67 chr13 19843656 19843756 -82029413 + MSTD LTR MaLR 1 103 -293 2300 89 3 0 chr13 19843756 19844049 -82029120 + AluSg SINE Alu 1 294 -16 1293 226 35 67 chr13 19844049 19844350 -82028819 + MSTD LTR MaLR 103 389 -7 379 292 0 0 chr13 19844370 19844459 -82028710 + L2 LINE L2 3214 3302 -11 448 340 159 11 chr13 19844596 19844966 -82028203 + L2 LINE L2 2457 2881 -433 543 411 33 10 chr13 19845105 19845409 -82027760 + L2 LINE L2 2931 3241 -31 2180 104 3 7 chr13 19845904 19846202 -82026967 + AluSx SINE Alu 1 297 -15 873 325 105 24 chr13 19848712 19848788 -82024381 - L2 LINE L2 -6 3266 3198 2219 132 0 0 chr13 19848788 19849099 -82024070 + AluJb SINE Alu 1 311 -1 873 325 105 24 chr13 19849099 19849770 -82023399 - L2 LINE L2 -74 3198 2450 2276 102 0 13 chr13 19850363 19850677 -82022492 - AluSg SINE Alu 0 310 1 435 38 0 0 chr13 19851085 19851138 -82022031 + (TG)n Simple_repeat Simple_repeat 2 54 0 254 157 43 57 chr13 19851485 19851555 -82021614 + MLT1B LTR MaLR 320 388 -2 518 295 62 43 chr13 19851612 19851822 -82021347 - MIR SINE MIR -14 248 35 463 240 101 0 chr13 19851826 19851955 -82021214 - MER5B DNA MER1_type 0 178 37 775 264 79 54 chr13 19851956 19852236 -82020933 - MLT1E LTR MaLR 0 593 368 234 245 0 0 chr13 19852300 19852353 -82020816 - MLT1E LTR MaLR -430 163 111 224 216 0 0 chr13 19852394 19852431 -82020738 - MER5B DNA MER1_type -139 39 3 329 180 0 0 chr13 19852586 19852647 -82020522 + MER116 DNA Mariner 15 75 -5 1094 190 54 54 chr13 19853576 19853907 -82019262 + MER33 DNA MER1_type 1 318 -6 818 191 20 80 chr13 19854119 19854318 -82018851 + MER5A DNA MER1_type 3 189 0 361 266 31 88 chr13 19854321 19854383 -82018786 - MIR SINE MIR -67 195 131 2516 109 61 24 chr13 19854383 19854754 -82018415 + MSTB LTR MaLR 1 390 -36 2616 55 0 0 chr13 19854754 19855062 -82018107 - AluY SINE Alu -3 308 1 2516 109 61 24 chr13 19855062 19855101 -82018068 + MSTB LTR MaLR 390 426 0 361 266 31 88 chr13 19855101 19855230 -82017939 - MIR SINE MIR -131 131 15 1267 188 73 23 chr13 19855575 19855928 -82017241 - MLT1A2 LTR MaLR -2 503 1 201 271 14 0 chr13 19856675 19856745 -82016424 + (TA)n Simple_repeat Simple_repeat 1 71 0 27 29 0 0 chr13 19856748 19856782 -82016387 + AT_rich Low_complexity Low_complexity 1 34 0 342 0 0 0 chr13 19857596 19857634 -82015535 + (CA)n Simple_repeat Simple_repeat 2 39 0 1670 166 107 0 chr13 19858102 19858428 -82014741 + MER46B DNA MER2_type 1 236 0 217 368 99 18 chr13 19859391 19859562 -82013607 - L2 LINE L2 -2521 793 609 1932 179 140 11 chr13 19863455 19863834 -82009335 + MSTA LTR MaLR 1 428 0 2245 110 3 0 chr13 19864212 19864512 -82008657 - AluSx SINE Alu -11 301 1 1334 137 33 0 chr13 19865053 19865265 -82007904 - LTR47A LTR ERVL 0 452 234 966 97 8 0 chr13 19865300 19865434 -82007735 - LTR47A LTR ERVL -314 138 4 237 146 0 0 chr13 19867695 19867736 -82005433 + L1MB3 LINE L1 6143 6183 0 296 268 8 73 chr13 19867842 19867965 -82005204 + MIR3 SINE MIR 62 176 -32 1952 150 3 0 chr13 19867974 19868268 -82004901 + AluSq SINE Alu 1 295 -18 180 0 0 0 chr13 19868271 19868291 -82004878 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 367 321 28 0 chr13 19868304 19868413 -82004756 + MER81 DNA DNA 3 114 0 454 247 62 28 chr13 19868491 19868686 -82004483 - MIR SINE MIR -6 256 4 274 183 67 0 chr13 19868699 19868759 -82004410 - MIR SINE MIR -13 249 186 2428 60 0 29 chr13 19868761 19869077 -82004092 - AluY SINE Alu -4 307 1 420 211 106 10 chr13 19869207 19869311 -82003858 - MER81 DNA DNA 0 114 1 387 0 0 0 chr13 19869479 19869522 -82003647 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1140 152 16 0 chr13 19869962 19870153 -82003016 + AluSg/x SINE Alu 117 310 -2 318 296 83 35 chr13 19870153 19870322 -82002847 - L2 LINE L2 -1211 2103 1927 240 130 0 0 chr13 19870356 19870402 -82002767 + (TG)n Simple_repeat Simple_repeat 1 46 0 1892 160 10 0 chr13 19870778 19871071 -82002098 + AluJo SINE Alu 2 297 -15 1989 124 0 0 chr13 19872396 19872686 -82000483 + L1P5 LINE L1 5517 5806 -348 635 281 112 10 chr13 19872970 19873336 -81999833 + L1ME3 LINE L1 5217 5630 -540 314 222 122 0 chr13 19873337 19873427 -81999742 + MER5A DNA MER1_type 9 109 -80 517 231 22 45 chr13 19873485 19873619 -81999550 + MER5B DNA MER1_type 44 174 -4 487 214 29 103 chr13 19873662 19873716 -81999453 + L1ME3 LINE L1 5717 5773 -389 1713 159 7 13 chr13 19873716 19874018 -81999151 + AluJb SINE Alu 1 300 -12 487 214 29 103 chr13 19874018 19874147 -81999022 + L1ME3 LINE L1 5773 5880 -282 2160 104 7 0 chr13 19874147 19874444 -81998725 + AluSg SINE Alu 1 299 -11 487 214 29 103 chr13 19874444 19874502 -81998667 + L1ME3 LINE L1 5880 5941 -221 231 160 67 27 chr13 19874516 19874591 -81998578 - L1MCa LINE L1 -4363 2063 1986 323 165 12 106 chr13 19875047 19875132 -81998037 + LTR67 LTR ERVL 477 553 -4 1925 156 3 0 chr13 19876435 19876736 -81996433 - AluJo SINE Alu -10 302 1 379 236 11 11 chr13 19878317 19878406 -81994763 - L2 LINE L2 -1 3312 3224 249 270 43 37 chr13 19878569 19878732 -81994437 + L2 LINE L2 878 1041 -2273 1293 281 155 35 chr13 19878733 19879359 -81993810 + Charlie2a DNA MER1_type 1 701 -2161 2753 151 61 30 chr13 19879362 19879904 -81993265 - L1MC3 LINE L1 0 7785 7227 1435 259 65 79 chr13 19879904 19880313 -81992856 + Charlie2a DNA MER1_type 666 1079 -1783 842 37 148 0 chr13 19880313 19880421 -81992748 + L1PA13 LINE L1 6036 6159 -4 1435 259 65 79 chr13 19880421 19881012 -81992157 + Charlie2a DNA MER1_type 1079 1652 -1210 2038 138 3 0 chr13 19881012 19881302 -81991867 + AluSp SINE Alu 1 291 -22 1344 213 32 23 chr13 19881311 19881621 -81991548 + L1MDa LINE L1 86 398 -6142 319 259 49 3 chr13 19881722 19881877 -81991292 - L2 LINE L2 -243 3070 2873 2139 307 137 28 chr13 19882156 19883474 -81989695 - L2 LINE L2 -658 2656 1196 203 197 30 45 chr13 19883907 19883973 -81989196 + (CAGA)n Simple_repeat Simple_repeat 4 68 0 375 254 149 29 chr13 19884894 19885086 -81988083 + MIR SINE MIR 32 249 -13 301 277 11 53 chr13 19885257 19885351 -81987818 + MIR SINE MIR 60 149 -59 191 184 102 0 chr13 19885375 19885424 -81987745 + MIR3 SINE MIR 132 185 -23 416 262 200 7 chr13 19886401 19886691 -81986478 - L1ME LINE L1 -567 5603 5258 638 279 76 18 chr13 19886724 19887000 -81986169 - MLT1J LTR MaLR -151 360 69 195 267 198 0 chr13 19887007 19887093 -81986076 + L3 LINE CR1 1154 1256 -321 261 309 12 36 chr13 19887837 19887921 -81985248 - L2 LINE L2 -15 3257 3176 560 121 0 0 chr13 19888378 19888461 -81984708 + AluJ/FRAM SINE Alu 230 312 0 346 215 0 38 chr13 19888477 19888556 -81984613 + FLAM_A SINE Alu 41 116 -17 2207 119 0 0 chr13 19888622 19888925 -81984244 - AluSx SINE Alu -9 303 1 602 184 128 28 chr13 19888985 19889126 -81984043 - L2 LINE L2 0 3313 3159 599 268 193 5 chr13 19889248 19889461 -81983708 + MIR SINE MIR 9 261 -1 425 132 88 0 chr13 19890432 19890500 -81982669 + MER5A DNA MER1_type 2 75 -114 1236 161 72 14 chr13 19890502 19890542 -81982627 + AluJb SINE Alu 1 37 -275 4017 139 6 35 chr13 19890542 19891196 -81981973 - MER41B LTR ERV1 0 635 1 1236 161 72 14 chr13 19891196 19891378 -81981791 + AluJb SINE Alu 37 236 -76 213 254 0 34 chr13 19892223 19892282 -81980887 + L2 LINE L2 1761 1817 -1497 342 286 17 50 chr13 19892304 19892371 -81980798 + MER5B DNA MER1_type 1 64 -114 2097 143 140 29 chr13 19892371 19892756 -81980413 + MSTA LTR MaLR 1 428 0 342 286 17 50 chr13 19892756 19892807 -81980362 + MER5B DNA MER1_type 64 115 -63 1645 176 0 21 chr13 19892913 19893203 -81979966 - AluJo SINE Alu -24 288 5 3343 153 24 43 chr13 19893779 19894305 -81978864 + MER41B LTR ERV1 1 342 -136 2316 84 3 34 chr13 19894305 19894628 -81978541 - AluSp SINE Alu 0 313 1 3343 153 24 43 chr13 19894628 19894751 -81978418 + MER41B LTR ERV1 342 466 -12 801 223 0 48 chr13 19894780 19894968 -81978201 - LTR16A LTR ERVL -13 437 259 227 323 46 0 chr13 19895006 19895071 -81978098 - MIR SINE MIR -174 88 21 576 209 26 89 chr13 19895109 19895143 -81978026 + MER106A DNA MER1_type 15 50 -186 1795 166 0 17 chr13 19895143 19895444 -81977725 - AluJo SINE Alu -15 297 2 576 209 26 89 chr13 19895444 19895600 -81977569 + MER106A DNA MER1_type 50 193 -43 2240 66 7 0 chr13 19895608 19895882 -81977287 + AluSp SINE Alu 1 276 -37 333 0 0 0 chr13 19896432 19896469 -81976700 + (CA)n Simple_repeat Simple_repeat 2 38 0 1234 215 52 17 chr13 19896500 19896788 -81976381 + AluJb SINE Alu 1 298 -14 340 333 74 19 chr13 19897384 19897546 -81975623 + L2 LINE L2 3077 3247 -25 342 291 66 44 chr13 19897962 19898144 -81975025 + L3b LINE CR1 1181 1366 -217 388 228 13 0 chr13 19898205 19898284 -81974885 + MER5A DNA MER1_type 32 111 -78 205 377 26 13 chr13 19898949 19899103 -81974066 + L2 LINE L2 2886 3041 -231 502 238 74 8 chr13 19899271 19899393 -81973776 + L2 LINE L2 3182 3311 -2 226 179 60 48 chr13 19899725 19899809 -81973360 - HSMAR1 DNA Mariner -1202 85 1 1298 197 55 39 chr13 19901640 19901970 -81971199 + MLT1B LTR MaLR 15 349 -41 6121 142 14 8 chr13 19902094 19903836 -81969333 - L1PA13 LINE L1 -34 6129 4383 1101 292 89 28 chr13 19903828 19904658 -81968511 - L1MEd LINE L1 -1891 4753 3873 * 327 321 61 16 chr13 19904687 19904933 -81968236 - L1MEd LINE L1 -3437 3207 2951 2632 234 40 59 chr13 19904956 19905701 -81967468 + MLT1C-int LTR MaLR 637 1367 -4 1519 224 32 55 chr13 19905719 19906152 -81967017 + MLT1C LTR MaLR 45 467 0 406 316 55 20 chr13 19906161 19906414 -81966755 - L1MEd LINE L1 -4003 2822 2561 344 312 56 34 chr13 19906744 19906978 -81966191 - HAL1 LINE L1 -769 1738 1500 347 256 11 33 chr13 19907018 19907108 -81966061 + MER5A DNA MER1_type 51 138 -51 413 266 87 33 chr13 19907173 19907407 -81965762 - L1MEd LINE L1 -4814 1847 1550 1431 112 5 5 chr13 19908420 19908617 -81964552 - L1PA6 LINE L1 0 6154 5958 219 69 0 0 chr13 19908826 19908855 -81964314 + (TC)n Simple_repeat Simple_repeat 1 29 0 649 330 130 50 chr13 19908917 19909926 -81963243 + L2 LINE L2 1608 2696 -618 608 236 111 42 chr13 19910203 19910419 -81962750 - LTR16B LTR ERVL -127 337 107 2111 321 62 27 chr13 19910794 19911980 -81961189 + ERVL LTR ERVL 4143 5370 -394 321 232 11 0 chr13 19912092 19912187 -81960982 + L1MA4 LINE L1 6200 6295 -5 183 42 0 0 chr13 19912201 19912225 -81960944 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1940 143 0 0 chr13 19912225 19912505 -81960664 - AluSx SINE Alu -32 280 1 1799 255 77 8 chr13 19912508 19913093 -81960076 + Charlie7 DNA MER1_type 1477 2101 -511 210 329 82 0 chr13 19913236 19913309 -81959860 + MIR SINE MIR 27 105 -103 396 307 22 7 chr13 19914239 19914376 -81958793 + L2 LINE L2 3175 3313 0 2039 136 7 19 chr13 19914578 19914887 -81958282 + AluSx SINE Alu 1 305 -7 5444 135 22 31 chr13 19915830 19916542 -81956627 - MER4D LTR ERV1 0 903 186 2393 94 0 3 chr13 19916542 19916849 -81956320 - AluSx SINE Alu -6 306 1 5444 135 22 31 chr13 19916849 19916991 -81956178 - MER4D LTR ERV1 -717 186 55 3465 143 72 21 chr13 19916991 19917573 -81955596 - LTR9 LTR ERV1 0 612 1 5444 135 22 31 chr13 19917573 19917623 -81955546 - MER4D LTR ERV1 -848 55 6 2002 112 4 14 chr13 19917768 19918044 -81955125 - AluSx SINE Alu -23 289 17 1970 181 117 49 chr13 19919822 19920291 -81952878 - MLT1D LTR MaLR 0 505 5 242 319 54 49 chr13 19921006 19921088 -81952081 - L2 LINE L2 -1331 1983 1903 1475 201 30 24 chr13 19921088 19921386 -81951783 + AluJo SINE Alu 1 300 -12 242 319 54 49 chr13 19921386 19921488 -81951681 - L2 LINE L2 -1411 1903 1798 1674 191 78 24 chr13 19922028 19922400 -81950769 - MSTD LTR MaLR 0 396 5 2129 101 19 16 chr13 19923920 19924227 -81948942 + AluSx SINE Alu 1 308 -4 288 91 0 0 chr13 19924557 19924601 -81948568 + (CA)n Simple_repeat Simple_repeat 1 44 0 1844 222 42 48 chr13 19924934 19925196 -81947973 + MER20B DNA MER1_type 1 260 -523 2274 96 0 13 chr13 19925196 19925497 -81947672 + AluSq SINE Alu 1 297 -16 1844 222 42 48 chr13 19925497 19925760 -81947409 + MER20B DNA MER1_type 260 523 -260 204 40 0 0 chr13 19925982 19926007 -81947162 + (TA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 19926788 19926809 -81946360 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr13 19926871 19926910 -81946259 + AT_rich Low_complexity Low_complexity 1 39 0 543 268 102 38 chr13 19926910 19926948 -81946221 - L1MC4 LINE L1 -2 8040 8006 1499 136 45 0 chr13 19926948 19927168 -81946001 - MER30 DNA MER1_type 0 230 1 543 268 102 38 chr13 19927168 19927364 -81945805 - L1MC4 LINE L1 -36 8006 7791 2154 119 0 7 chr13 19928272 19928574 -81944595 - AluSx SINE Alu -8 304 5 1156 146 22 0 chr13 19929177 19929355 -81943814 + AluJb SINE Alu 129 310 -2 2184 128 0 0 chr13 19929842 19930140 -81943029 - AluSq SINE Alu -15 298 1 2650 142 40 19 chr13 19930227 19930651 -81942518 + Tigger2a DNA MER2_type 2 434 0 180 0 0 0 chr13 19930841 19930861 -81942308 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 1045 164 101 24 chr13 19931891 19932122 -81941047 - AluJb SINE Alu 0 305 59 3962 217 24 26 chr13 19932241 19933419 -81939750 + L1PA12 LINE L1 728 2681 -4903 2105 100 0 0 chr13 19933425 19933696 -81939473 + L1PA11 LINE L1 5902 6172 -2 478 191 118 7 chr13 19934548 19934684 -81938485 - MSTB LTR MaLR 0 428 278 3935 192 1 10 chr13 19934684 19935396 -81937773 - MST-int LTR MaLR -406 1245 540 1488 156 83 60 chr13 19935401 19935715 -81937454 - MSTB LTR MaLR -105 321 1 540 306 129 9 chr13 19935845 19936077 -81937092 - MIR SINE MIR 0 262 3 347 212 12 0 chr13 19936599 19936684 -81936485 + GA-rich Low_complexity Low_complexity 3 88 0 604 306 35 27 chr13 19936825 19937194 -81935975 + L1MEc LINE L1 1290 1661 -4735 1779 230 117 10 chr13 19938027 19938532 -81934637 + MLT2F LTR ERVL 31 589 -74 1042 209 134 28 chr13 19938533 19938689 -81934480 - MLT1F LTR MaLR -1 541 403 2399 89 0 0 chr13 19938689 19938991 -81934178 + AluSx SINE Alu 1 302 -10 1042 209 134 28 chr13 19938991 19939002 -81934167 - MLT1F LTR MaLR -139 403 395 1053 209 47 14 chr13 19939002 19939217 -81933952 - MER58A DNA MER1_type -2 222 1 1042 209 134 28 chr13 19939217 19939483 -81933686 - MLT1F LTR MaLR -147 395 1 432 258 58 58 chr13 19939632 19939764 -81933405 + HAL1b LINE L1 283 417 -931 1874 153 0 23 chr13 19939764 19940065 -81933104 - AluJo SINE Alu -18 294 1 432 258 58 58 chr13 19940065 19940192 -81932977 + HAL1b LINE L1 416 542 -806 200 219 141 133 chr13 19940463 19940591 -81932578 - L2 LINE L2 -215 3057 2929 457 332 106 8 chr13 19940982 19941217 -81931952 - L2 LINE L2 -468 2846 2589 2076 103 0 0 chr13 19942038 19942309 -81930860 + AluSq SINE Alu 10 280 -33 1759 120 123 25 chr13 19942409 19942726 -81930443 - LTR26 LTR ERV1 -255 348 1 210 338 122 14 chr13 19942734 19942873 -81930296 + MIR3 SINE MIR 38 191 -17 2400 60 0 0 chr13 19943130 19943464 -81929705 + AluY SINE Alu 1 334 0 8512 124 21 19 chr13 19945169 19946134 -81927035 - HSMAR2 DNA Mariner -1 1301 340 2832 63 0 0 chr13 19946134 19946491 -81926678 - L1PA7 LINE L1 0 6154 5820 2093 128 0 0 chr13 19946491 19946780 -81926389 - AluSq SINE Alu -24 289 1 8512 124 21 19 chr13 19946780 19947111 -81926058 - HSMAR2 DNA Mariner -961 341 1 22 70 0 0 chr13 19947394 19947437 -81925732 + AT_rich Low_complexity Low_complexity 1 43 0 408 345 62 23 chr13 19950395 19950653 -81922516 - L2 LINE L2 -822 2492 2225 2307 123 37 35 chr13 19950774 19951148 -81922021 - THE1C LTR MaLR 0 375 1 220 347 40 84 chr13 19951602 19951876 -81921293 - L2 LINE L2 -2797 517 256 453 269 43 43 chr13 19952736 19952877 -81920292 + MIR SINE MIR 13 153 -109 3429 197 13 45 chr13 19952886 19953642 -81919527 + L1PA12 LINE L1 2 733 -6848 28 0 0 0 chr13 19954848 19954876 -81918293 + AT_rich Low_complexity Low_complexity 1 28 0 483 243 50 31 chr13 19954897 19955117 -81918052 - L1MC5 LINE L1 -519 7493 7237 2153 177 8 11 chr13 19955278 19955640 -81917529 - MLT1A1 LTR MaLR -4 361 1 639 110 0 0 chr13 19956004 19956086 -81917083 - 5S rRNA rRNA -33 88 7 2467 96 45 25 chr13 19956369 19956724 -81916445 - THE1B LTR MaLR -2 362 1 807 207 22 84 chr13 19957220 19957353 -81915816 + MER20B DNA MER1_type 524 633 -150 999 141 43 16 chr13 19957353 19957538 -81915631 - L1MB2 LINE L1 -2 6169 5980 807 207 22 84 chr13 19957538 19957679 -81915490 + MER20B DNA MER1_type 633 781 -2 331 274 128 0 chr13 19957684 19957786 -81915383 + L2 LINE L2 3199 3313 0 1543 191 61 0 chr13 19957804 19957925 -81915244 + AluJo SINE Alu 1 113 -199 206 79 0 26 chr13 19957925 19957963 -81915206 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 1543 191 61 0 chr13 19957963 19958135 -81915034 + AluJo SINE Alu 113 312 0 1264 99 11 22 chr13 19958671 19958852 -81914317 + AluSq SINE Alu 121 299 -14 2171 218 23 7 chr13 19959265 19959705 -81913464 - MER39 LTR ERV1 0 707 261 1905 127 0 0 chr13 19959852 19960112 -81913057 + AluSx SINE Alu 1 260 -52 1097 164 6 0 chr13 19960125 19960308 -81912861 + AluJb SINE Alu 129 312 0 1076 218 34 11 chr13 19960318 19960584 -81912585 + MER69 DNA AcHobo 555 826 -400 2130 110 24 0 chr13 19961001 19961292 -81911877 + AluSq SINE Alu 1 298 -15 24 0 0 0 chr13 19961489 19961513 -81911656 + AT_rich Low_complexity Low_complexity 1 24 0 2188 186 55 14 chr13 19961594 19962029 -81911140 + MSTB2 LTR MaLR 1 453 -4 33 0 0 0 chr13 19962535 19962568 -81910601 + AT_rich Low_complexity Low_complexity 1 33 0 744 306 82 41 chr13 19963375 19963862 -81909307 - LTR33 LTR ERVL 0 521 15 2026 117 30 10 chr13 19964181 19964479 -81908690 + AluSc SINE Alu 1 304 -5 558 190 0 10 chr13 19964860 19964960 -81908209 + MER5B DNA MER1_type 1 99 -79 185 268 0 0 chr13 19965008 19965049 -81908120 - MIR3 SINE MIR -28 180 140 778 246 91 55 chr13 19965049 19965559 -81907610 + LTR48B LTR ERV1 3 772 -12 208 186 47 0 chr13 19965686 19965729 -81907440 - L2 LINE L2 -6 3307 3263 957 204 73 0 chr13 19965750 19965956 -81907213 + L1ME1 LINE L1 5707 5927 -239 4399 139 24 7 chr13 19965957 19966656 -81906513 + MER50 LTR ERV1 1 711 -23 827 215 46 38 chr13 19966657 19966875 -81906294 + L1MB8 LINE L1 5928 6150 -28 1427 204 123 17 chr13 19966875 19967233 -81905936 - MSTD LTR MaLR 0 396 1 827 215 46 38 chr13 19967233 19967251 -81905918 + L1MB8 LINE L1 6150 6166 -12 382 297 77 28 chr13 19967387 19967569 -81905600 - MER34 LTR ERV1 -7 535 345 237 267 99 30 chr13 19967813 19967914 -81905255 - MER34 LTR ERV1 -413 129 22 370 198 12 0 chr13 19967931 19968012 -81905157 + MER63C DNA MER1_type 92 173 -757 2440 91 0 0 chr13 19968107 19968415 -81904754 + AluSq SINE Alu 1 308 -5 3423 107 11 0 chr13 19968421 19968880 -81904289 + L1PA11 LINE L1 5709 6172 -2 446 214 48 0 chr13 19969016 19969119 -81904050 + MER63C DNA MER1_type 260 367 -563 1593 188 138 21 chr13 19969319 19969755 -81903414 + LTR54B LTR ERV1 10 496 -2 1900 144 0 0 chr13 19970989 19971267 -81901902 - AluSg SINE Alu -32 278 1 1939 193 62 7 chr13 19971267 19971702 -81901467 + MER63C DNA MER1_type 473 931 0 253 182 15 30 chr13 19971711 19971777 -81901392 - MIR SINE MIR -123 139 75 26 64 0 0 chr13 19972890 19972937 -81900232 + GC_rich Low_complexity Low_complexity 1 47 0 343 290 86 90 chr13 19973029 19973274 -81899895 - L1M2 LINE L1 -5848 1001 758 294 299 186 6 chr13 19974254 19974421 -81898748 + MIR SINE MIR 32 228 -34 1006 167 0 28 chr13 19974570 19974750 -81898419 + FRAM SINE Alu 1 174 -2 875 147 0 7 chr13 19974886 19975029 -81898140 + AluJ SINE Alu 1 142 -170 995 185 6 0 chr13 19975129 19975291 -81897878 + AluJ SINE Alu 131 293 -19 2057 111 30 7 chr13 19975701 19975998 -81897171 - AluSg SINE Alu -6 304 1 723 172 52 0 chr13 19976190 19976306 -81896863 - FLAM_A SINE Alu -11 122 1 694 264 130 13 chr13 19976630 19976861 -81896308 - MIR SINE MIR -3 259 2 466 326 143 46 chr13 19977375 19977746 -81895423 + L3 LINE CR1 1160 1566 -11 1698 171 22 4 chr13 19979511 19979785 -81893384 + AluJo SINE Alu 1 279 -33 401 277 80 50 chr13 19980064 19980302 -81892867 + L1ME3A LINE L1 5512 5756 -365 786 132 0 9 chr13 19980495 19980609 -81892560 + FRAM SINE Alu 34 146 -30 183 80 0 0 chr13 19980744 19980769 -81892400 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 31 0 0 chr13 19981594 19981626 -81891543 + AT_rich Low_complexity Low_complexity 1 32 0 420 248 82 16 chr13 19981740 19981862 -81891307 + MER20B DNA MER1_type 65 197 -22 1257 264 46 78 chr13 19983219 19983783 -81889386 + MLT1H LTR MaLR 4 549 0 303 203 81 0 chr13 19983790 19983864 -81889305 - MLT1F LTR MaLR -7 535 456 553 264 126 0 chr13 19983913 19984080 -81889089 + MLT1G1 LTR MaLR 1 188 -407 1921 142 0 0 chr13 19984299 19984567 -81888602 + AluSx SINE Alu 29 296 -16 853 251 100 26 chr13 19984650 19984961 -81888208 + L1ME3A LINE L1 5824 6157 -13 873 244 112 42 chr13 19984988 19985300 -81887869 + MLT1J LTR MaLR 101 434 -77 2112 113 3 42 chr13 19986240 19986550 -81886619 + AluSx SINE Alu 6 303 -9 298 343 164 0 chr13 19986818 19986964 -81886205 - MIR SINE MIR -61 201 32 384 306 89 17 chr13 19987151 19987331 -81885838 - MIR SINE MIR -50 212 20 2122 120 10 0 chr13 19987384 19987676 -81885493 - AluSx SINE Alu -17 295 1 754 297 116 36 chr13 19987980 19988467 -81884702 - L1MC4a LINE L1 -331 5839 5387 1821 196 0 0 chr13 19988467 19988778 -81884391 - AluJb SINE Alu -1 311 1 754 297 116 36 chr13 19988778 19988879 -81884290 - L1MC4a LINE L1 -783 5387 5295 2030 149 0 0 chr13 19990192 19990488 -81882681 + AluJb SINE Alu 7 302 -10 2418 165 103 9 chr13 19991270 19991706 -81881463 - MER61D LTR ERV1 0 501 25 283 213 0 0 chr13 19991673 19991734 -81881435 - LTR28 LTR ERV1 -959 61 1 * 359 216 105 70 chr13 19992058 19992229 -81880940 - MLT1H1 LTR MaLR -33 522 346 1328 180 51 38 chr13 19992252 19992604 -81880565 + MER58B DNA MER1_type 11 340 -1 2135 112 6 59 chr13 19992633 19992955 -81880214 - AluSq SINE Alu -8 305 1 231 271 108 36 chr13 19992963 19993129 -81880040 - MLT1H1 LTR MaLR -261 288 111 3374 171 56 64 chr13 19993357 19994149 -81879020 - LTR1 LTR ERV1 0 785 1 1866 167 67 110 chr13 19994161 19994687 -81878482 + MLT1D LTR MaLR 1 503 -2 1271 147 5 0 chr13 19994844 19995035 -81878134 - AluSg/x SINE Alu -15 297 106 436 19 0 19 chr13 19995684 19995736 -81877433 - AluYb8 SINE Alu -27 291 241 267 233 164 43 chr13 19996138 19996254 -81876915 + L2 LINE L2 3128 3257 -56 180 303 15 30 chr13 19996435 19996501 -81876668 - L2 LINE L2 -64 3208 3144 222 171 0 0 chr13 19997390 19997431 -81875738 + (TA)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr13 19997614 19997635 -81875534 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 857 235 0 0 chr13 19998249 19998419 -81874750 - FRAM SINE Alu -5 171 2 2395 74 20 0 chr13 19998497 19998793 -81874376 + AluSc SINE Alu 1 302 -7 362 289 31 23 chr13 19999176 19999304 -81873865 + L2 LINE L2 3184 3312 -1 204 311 122 0 chr13 20001410 20001484 -81871685 + L2 LINE L2 3204 3286 -27 189 0 0 0 chr13 20001572 20001593 -81871576 + (TC)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 20001640 20001662 -81871507 + AT_rich Low_complexity Low_complexity 1 22 0 4132 265 172 5 chr13 20001793 20002666 -81870503 + L2 LINE L2 1190 1916 -1397 2310 104 3 7 chr13 20002666 20002975 -81870194 - AluSx SINE Alu -4 308 1 4132 265 172 5 chr13 20002975 20003933 -81869236 + L2 LINE L2 1916 3313 0 223 196 36 18 chr13 20003930 20003986 -81869183 - MIR3 SINE MIR -1 207 151 * 2257 101 0 0 chr13 20005301 20005587 -81867582 + AluSg SINE Alu 1 286 -24 2230 125 0 0 chr13 20006173 20006484 -81866685 + AluSx SINE Alu 1 311 -1 2286 95 3 16 chr13 20006664 20006968 -81866201 - AluSx SINE Alu -12 300 1 1557 141 119 15 chr13 20007308 20007577 -81865592 + AluSx SINE Alu 15 311 -1 364 230 240 0 chr13 20008994 20009094 -81864075 - MER5A DNA MER1_type 0 189 66 2336 85 0 7 chr13 20009095 20009400 -81863769 - AluSq SINE Alu -10 303 1 440 253 129 17 chr13 20010233 20010474 -81862695 + L1MC5 LINE L1 7643 7910 -51 22 35 0 0 chr13 20010502 20010531 -81862638 + AT_rich Low_complexity Low_complexity 1 29 0 600 237 6 41 chr13 20010602 20010771 -81862398 + MER91B DNA MER1_type 27 189 -1 333 181 118 94 chr13 20010987 20011114 -81862055 - L1ME4a LINE L1 -32 6089 5960 1059 178 5 11 chr13 20011122 20011307 -81861862 - AluJo SINE Alu -128 184 1 384 265 45 8 chr13 20011307 20011439 -81861730 - L1ME4a LINE L1 -180 5941 5805 3649 101 29 29 chr13 20011619 20011974 -81861195 + MER41A LTR ERV1 11 368 -186 2357 96 3 0 chr13 20011974 20012286 -81860883 + AluSp SINE Alu 1 313 0 3649 101 29 29 chr13 20012286 20012474 -81860695 + MER41A LTR ERV1 367 554 0 2436 68 0 13 chr13 20012737 20013048 -81860121 - AluY SINE Alu -4 307 1 826 128 0 0 chr13 20013616 20013725 -81859444 - AluSg/x SINE Alu -18 292 184 212 170 75 57 chr13 20014102 20014155 -81859014 + MIR SINE MIR 111 164 -98 478 147 0 0 chr13 20014258 20014326 -81858843 - AluS SINE Alu -243 70 3 2276 101 3 3 chr13 20014360 20014657 -81858512 + AluSx SINE Alu 1 297 -15 291 219 24 61 chr13 20014658 20014740 -81858429 + L2 LINE L2 2644 2722 -592 454 176 10 29 chr13 20014740 20014842 -81858327 + MER4B LTR ERV1 1 100 -510 4145 132 19 20 chr13 20014871 20015507 -81857662 + MER41B LTR ERV1 1 635 0 353 281 244 12 chr13 20015507 20015749 -81857420 + L2 LINE L2 3016 3313 0 1899 196 83 10 chr13 20016218 20016616 -81856553 + MSTB1 LTR MaLR 1 427 -5 735 89 10 0 chr13 20017028 20017129 -81856040 + MER41B LTR ERV1 1 102 -533 378 93 27 107 chr13 20017093 20017168 -81856001 - 5S rRNA rRNA -4 117 49 * 345 283 30 10 chr13 20019404 20019503 -81853666 + MER5A DNA MER1_type 9 109 -80 568 297 28 11 chr13 20020859 20021041 -81852128 - MER5A DNA MER1_type -1 188 4 1705 179 24 14 chr13 20021169 20021466 -81851703 + AluJo SINE Alu 1 300 -12 2116 195 101 6 chr13 20021473 20021950 -81851219 + L1MB4 LINE L1 5600 6121 -59 1907 113 50 0 chr13 20021950 20022232 -81850937 - AluSx SINE Alu -16 296 1 272 200 36 0 chr13 20022240 20022295 -81850874 + AluSp SINE Alu 114 170 -133 1946 117 15 0 chr13 20022820 20023094 -81850075 + AluSq SINE Alu 18 295 -18 504 141 12 0 chr13 20023146 20023231 -81849938 + L1MB8 LINE L1 6093 6178 0 2401 178 141 6 chr13 20023865 20024349 -81848820 - MER44D DNA MER2_type 0 605 2 333 291 12 0 chr13 20024352 20024438 -81848731 + L2 LINE L2 3185 3271 -1 2281 126 0 0 chr13 20024488 20024798 -81848371 + AluSx SINE Alu 1 310 -2 239 317 0 0 chr13 20024815 20024875 -81848294 - L2 LINE L2 0 3272 3213 245 254 16 32 chr13 20025075 20025138 -81848031 + L2 LINE L2 3250 3311 -2 2303 105 0 0 chr13 20026833 20027128 -81846041 + AluSq SINE Alu 1 295 -18 733 299 42 17 chr13 20027363 20027721 -81845448 + HAL1 LINE L1 1227 1593 -914 2352 87 0 3 chr13 20027828 20028126 -81845043 + AluY SINE Alu 1 297 -14 535 291 37 16 chr13 20028152 20028341 -81844828 + MIR SINE MIR 52 244 -18 412 284 191 33 chr13 20028415 20028630 -81844539 + MIR SINE MIR 14 262 0 1243 206 90 34 chr13 20030105 20030483 -81842686 + Charlie4a DNA MER1_type 63 461 -47 2252 65 4 0 chr13 20030593 20030872 -81842297 - AluSx SINE Alu -32 280 1 2626 37 0 0 chr13 20031636 20031936 -81841233 - AluY SINE Alu -11 300 1 288 197 141 0 chr13 20032071 20032142 -81841027 + MER53 DNA DNA 1 81 -108 526 177 108 15 chr13 20032234 20032364 -81840805 + L1MB3 LINE L1 6042 6183 0 288 171 66 26 chr13 20032434 20032510 -81840659 - MER53 DNA DNA -110 79 1 312 306 81 38 chr13 20032620 20032780 -81840389 - L1M2 LINE L1 -5930 919 753 226 0 0 0 chr13 20033096 20033123 -81840046 + L1MC2 LINE L1 6302 6328 -16 21 36 0 0 chr13 20034186 20034214 -81838955 + AT_rich Low_complexity Low_complexity 1 28 0 782 221 164 14 chr13 20034303 20034583 -81838586 + MER5C DNA MER1_type 3 324 0 2080 112 27 0 chr13 20034988 20035282 -81837887 + AluSc SINE Alu 1 302 -7 191 167 24 0 chr13 20036059 20036101 -81837068 + (CA)n Simple_repeat Simple_repeat 2 44 0 1857 176 48 9 chr13 20036137 20036472 -81836697 + MER7A DNA MER2_type 1 346 0 207 69 0 0 chr13 20036608 20036637 -81836532 + (CAGTT)n Simple_repeat Simple_repeat 2 30 0 443 163 255 0 chr13 20037865 20037963 -81835206 + FRAM SINE Alu 19 141 -35 308 239 97 0 chr13 20038334 20038447 -81834722 - L1ME4a LINE L1 -4 6117 5994 387 211 0 14 chr13 20038471 20038542 -81834627 + Charlie1 DNA MER1_type 1 70 -2691 * 1436 209 94 0 chr13 20038541 20038923 -81834246 + Charlie1 DNA MER1_type 2343 2760 -1 385 65 16 16 chr13 20040126 20040188 -81832981 + (TG)n Simple_repeat Simple_repeat 2 63 0 806 192 58 13 chr13 20040710 20040866 -81832303 + AluJo SINE Alu 120 282 -30 1955 167 0 0 chr13 20041375 20041687 -81831482 + AluJb SINE Alu 1 312 0 208 320 0 39 chr13 20041768 20041846 -81831323 + MIR SINE MIR 66 140 -68 180 0 0 0 chr13 20043290 20043310 -81829859 + (CA)n Simple_repeat Simple_repeat 2 21 0 535 274 124 0 chr13 20043972 20044158 -81829011 - MIR SINE MIR -49 213 5 429 314 80 81 chr13 20044445 20044957 -81828212 - L2 LINE L2 0 3272 2761 836 127 110 0 chr13 20044957 20045075 -81828094 - FLAM_C SINE Alu 0 133 3 429 314 80 81 chr13 20045075 20045122 -81828047 - L2 LINE L2 -511 2761 2715 2338 110 0 0 chr13 20045122 20045430 -81827739 - AluSx SINE Alu -4 308 1 429 314 80 81 chr13 20045430 20045582 -81827587 - L2 LINE L2 -557 2715 2558 186 304 169 11 chr13 20045681 20045865 -81827304 - L2 LINE L2 -1809 1505 1293 1785 137 77 58 chr13 20046052 20046417 -81826752 + THE1C LTR MaLR 4 375 0 231 269 0 0 chr13 20049181 20049233 -81823936 - L2 LINE L2 -1 3312 3261 255 276 20 0 chr13 20050971 20051069 -81822100 + L1ME3 LINE L1 5555 5654 -508 264 111 0 0 chr13 20051325 20051370 -81821799 + (TA)n Simple_repeat Simple_repeat 2 46 0 560 286 59 23 chr13 20051380 20051710 -81821459 + L1ME3 LINE L1 5684 5923 -239 26 30 0 0 chr13 20051850 20051883 -81821286 + AT_rich Low_complexity Low_complexity 1 33 0 2235 134 48 31 chr13 20052065 20052423 -81820746 + THE1B LTR MaLR 1 364 0 1014 144 133 26 chr13 20053276 20053471 -81819698 - MER20 DNA MER1_type -3 216 1 1833 160 0 0 chr13 20054017 20054340 -81818829 - AluJb SINE Alu 0 323 1 27 73 0 0 chr13 20054672 20054727 -81818442 + AT_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr13 20054960 20054981 -81818188 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 2609 55 0 7 chr13 20055757 20056065 -81817104 - AluY SINE Alu -5 306 1 3519 219 59 52 chr13 20056135 20057405 -81815764 + L1M4 LINE L1 3441 4719 -1427 228 323 71 8 chr13 20057557 20057684 -81815485 - L2 LINE L2 -995 2319 2185 945 245 69 87 chr13 20057721 20058183 -81814986 + L2 LINE L2 2608 3051 -262 2290 109 3 0 chr13 20058183 20058485 -81814684 - AluSg SINE Alu -7 303 1 945 245 69 87 chr13 20058485 20058575 -81814594 + L2 LINE L2 3051 3141 -172 387 0 0 0 chr13 20058592 20058635 -81814534 + (CA)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr13 20058641 20058670 -81814499 + AT_rich Low_complexity Low_complexity 1 29 0 1503 184 0 22 chr13 20058670 20058942 -81814227 - L1MB5 LINE L1 -8 6166 5901 2815 185 33 41 chr13 20058980 20059318 -81813851 - L1MB5 LINE L1 -416 5758 5419 2340 107 0 16 chr13 20059318 20059635 -81813534 - AluSx SINE Alu 0 312 1 2815 185 33 41 chr13 20059635 20060357 -81812812 - L1MB5 LINE L1 -755 5419 4704 2322 95 0 13 chr13 20060357 20060663 -81812506 - AluSg SINE Alu -8 302 1 2815 185 33 41 chr13 20060663 20060696 -81812473 - L1MB5 LINE L1 -1470 4704 4672 545 248 35 28 chr13 20060708 20060849 -81812320 + L2 LINE L2 3172 3313 0 2223 112 0 6 chr13 20061020 20061332 -81811837 - AluSg SINE Alu 0 310 1 27 0 0 0 chr13 20061874 20061901 -81811268 + AT_rich Low_complexity Low_complexity 1 27 0 216 222 37 56 chr13 20062782 20062836 -81810333 + L2 LINE L2 3251 3303 -10 945 204 41 0 chr13 20062947 20063143 -81810026 + MER20 DNA MER1_type 15 218 -1 1761 160 0 57 chr13 20063381 20063712 -81809457 + AluJo SINE Alu 1 312 0 518 146 122 65 chr13 20063753 20063876 -81809293 - FLAM_C SINE Alu -11 132 3 3853 168 37 40 chr13 20064423 20065294 -81807875 + L1MB4 LINE L1 5262 6131 -49 1655 151 26 40 chr13 20065294 20065598 -81807571 + AluJo SINE Alu 1 300 -12 3853 168 37 40 chr13 20065598 20065645 -81807524 + L1MB4 LINE L1 6131 6177 -3 207 128 77 0 chr13 20067626 20067665 -81805504 + MIR SINE MIR 123 164 -98 2520 46 0 7 chr13 20067823 20068126 -81805043 + AluY SINE Alu 1 301 -10 730 180 0 0 chr13 20068217 20068356 -81804813 + L1MC1 LINE L1 5988 6126 -207 208 182 91 0 chr13 20068824 20068868 -81804301 + L2 LINE L2 3265 3312 -1 1740 166 0 14 chr13 20068927 20069217 -81803952 - AluJb SINE Alu -26 286 1 21 0 0 0 chr13 20069429 20069450 -81803719 + AT_rich Low_complexity Low_complexity 1 21 0 2305 108 3 0 chr13 20069603 20069909 -81803260 - AluSp SINE Alu -6 307 1 1166 182 162 3 chr13 20070786 20071082 -81802087 + MER2 DNA MER2_type 2 344 0 219 249 6 152 chr13 20071154 20071319 -81801850 + L2 LINE L2 3169 3309 -4 2492 68 0 0 chr13 20072140 20072448 -81800721 + AluY SINE Alu 1 308 -3 180 77 0 0 chr13 20073441 20073467 -81799702 + (GA)n Simple_repeat Simple_repeat 1 26 0 199 297 88 33 chr13 20074482 20074573 -81798596 - L2 LINE L2 -18 3295 3200 21 36 0 0 chr13 20076047 20076075 -81797094 + AT_rich Low_complexity Low_complexity 1 28 0 230 270 0 0 chr13 20077542 20077605 -81795564 + C-rich Low_complexity Low_complexity 5 67 0 23 0 0 0 chr13 20077630 20077653 -81795516 + GC_rich Low_complexity Low_complexity 1 23 0 240 35 0 0 chr13 20077720 20077749 -81795420 + (CACCC)n Simple_repeat Simple_repeat 4 32 0 381 257 141 108 chr13 20077962 20078603 -81794566 + L1M2 LINE L1 524 1295 -5554 23 33 0 0 chr13 20081710 20081740 -81791429 + AT_rich Low_complexity Low_complexity 1 30 0 186 298 170 29 chr13 20081968 20082139 -81791030 - L2 LINE L2 -2 3270 3076 318 288 120 0 chr13 20082225 20082350 -81790819 - MER91A DNA MER1_type -52 144 5 182 319 80 0 chr13 20082567 20082680 -81790489 - MIR SINE MIR -36 226 105 285 325 126 7 chr13 20082829 20082980 -81790189 - L2 LINE L2 -639 2675 2507 622 173 168 35 chr13 20083147 20083320 -81789849 + L2 LINE L2 3117 3312 -1 344 237 178 0 chr13 20083376 20083494 -81789675 - Charlie8 DNA MER1_type -2182 235 97 1924 138 0 4 chr13 20083499 20083775 -81789394 - AluSx SINE Alu -37 275 1 2194 95 0 3 chr13 20084871 20085165 -81788004 + AluY SINE Alu 1 293 -18 4068 165 33 16 chr13 20085312 20086317 -81786852 - L1MB2 LINE L1 -52 6119 5096 459 340 81 20 chr13 20086536 20086833 -81786336 + L2 LINE L2 2998 3312 -1 285 29 0 0 chr13 20086969 20087003 -81786166 + (TG)n Simple_repeat Simple_repeat 2 35 0 34 42 0 0 chr13 20087193 20087241 -81785928 + AT_rich Low_complexity Low_complexity 1 48 0 3239 89 5 5 chr13 20087884 20088333 -81784836 - L1PA10 LINE L1 -3 6165 5717 1971 130 33 10 chr13 20088395 20088696 -81784473 + AluJb SINE Alu 1 308 -4 1496 106 23 26 chr13 20088701 20088966 -81784203 + L1MA8 LINE L1 6022 6285 -6 2458 66 0 13 chr13 20089029 20089334 -81783835 - AluY SINE Alu -10 301 1 666 169 184 0 chr13 20089392 20089528 -81783641 - AluSp SINE Alu -16 297 137 183 300 46 62 chr13 20089696 20089826 -81783343 - MIR SINE MIR -53 209 82 2289 109 0 3 chr13 20090310 20090621 -81782548 - AluSx SINE Alu -2 310 1 209 229 0 21 chr13 20090842 20090890 -81782279 + (TAG)n Simple_repeat Simple_repeat 2 48 0 1824 159 0 28 chr13 20090943 20091264 -81781905 + AluJb SINE Alu 1 312 0 1663 181 41 9 chr13 20091303 20091646 -81781523 + MLT1A1 LTR MaLR 2 355 -10 4557 190 33 15 chr13 20091654 20092972 -81780197 - L1MD1 LINE L1 -43 6593 5243 714 221 14 21 chr13 20092975 20093120 -81780049 + AluJo SINE Alu 3 146 -166 3734 215 46 25 chr13 20093124 20093644 -81779525 - L1MD1 LINE L1 -1308 5232 4724 2154 106 38 0 chr13 20093644 20093937 -81779232 - AluSp SINE Alu -9 304 1 3734 215 46 25 chr13 20093937 20094659 -81778510 - L1MD1 LINE L1 -1816 4724 3919 2158 177 85 20 chr13 20094655 20095114 -81778055 - L1MD1 LINE L1 -3584 2956 2528 * 1758 174 7 23 chr13 20095114 20095424 -81777745 - AluJo SINE Alu -7 305 1 2158 177 85 20 chr13 20095424 20095832 -81777337 - L1MD1 LINE L1 -4012 2528 2030 3829 215 115 45 chr13 20097587 20099190 -81773979 - L1MD1 LINE L1 -4495 2045 184 293 0 75 19 chr13 20099190 20099243 -81773926 + (CAAA)n Simple_repeat Simple_repeat 4 59 0 3829 215 115 45 chr13 20099243 20099437 -81773732 - L1MD1 LINE L1 -6356 184 5 2282 108 20 0 chr13 20099585 20099891 -81773278 + AluSx SINE Alu 1 312 0 2361 110 3 0 chr13 20100486 20100796 -81772373 - AluSq SINE Alu -2 311 1 737 118 178 0 chr13 20101325 20101460 -81771709 + MSTA LTR MaLR 1 159 -269 1858 155 28 0 chr13 20101655 20101945 -81771224 - AluSx SINE Alu -14 298 1 1855 151 0 3 chr13 20102109 20102418 -81770751 + AluSx SINE Alu 1 308 0 280 290 60 0 chr13 20102850 20102950 -81770219 + L3 LINE CR1 645 750 -827 2271 77 0 20 chr13 20103224 20103545 -81769624 + AluY SINE Alu 1 311 0 538 290 172 7 chr13 20103559 20103838 -81769331 + L3 LINE CR1 1209 1533 -44 660 246 168 0 chr13 20103840 20104031 -81769138 + MER58A DNA MER1_type 2 224 0 435 145 297 7 chr13 20104847 20104883 -81768286 + MER3 DNA MER1_type 15 39 -170 640 160 101 25 chr13 20104883 20105002 -81768167 + FLAM_A SINE Alu 1 128 -5 435 145 297 7 chr13 20105002 20105103 -81768066 + MER3 DNA MER1_type 39 192 -17 1024 191 31 12 chr13 20105571 20105828 -81767341 - L1MA7 LINE L1 -4 6287 6026 212 377 9 44 chr13 20105988 20106102 -81767067 + MIR SINE MIR 40 149 -59 314 276 60 17 chr13 20106197 20106313 -81766856 + L2 LINE L2 3193 3313 0 1543 156 48 0 chr13 20106317 20106606 -81766563 - MER58B DNA MER1_type 0 341 39 5494 58 46 3 chr13 20106610 20107351 -81765818 - LTR17 LTR ERV1 -7 773 1 506 122 12 0 chr13 20107432 20107514 -81765655 + L1PA16 LINE L1 6075 6157 -9 234 325 53 34 chr13 20107839 20108048 -81765121 + L2 LINE L2 1183 1395 -1919 648 190 0 36 chr13 20108219 20108356 -81764813 - FLAM_A SINE Alu -1 132 1 608 368 85 29 chr13 20108681 20109537 -81763632 + L2 LINE L2 1777 2680 -634 616 279 40 40 chr13 20109614 20109844 -81763325 - MIR SINE MIR 0 262 30 207 0 0 0 chr13 20112006 20112029 -81761140 + (CAA)n Simple_repeat Simple_repeat 2 24 0 291 343 54 24 chr13 20113060 20113226 -81759943 + MER5B DNA MER1_type 3 173 -5 390 284 21 0 chr13 20113889 20113905 -81759264 - L1MA10 LINE L1 -1 6333 6318 2765 204 25 17 chr13 20113905 20114596 -81758573 - L1ME1 LINE L1 -11 6155 5460 8874 169 41 12 chr13 20114718 20116339 -81756830 + L1PA16 LINE L1 2 1813 -5036 180 0 0 0 chr13 20116339 20116359 -81756810 + (TA)n Simple_repeat Simple_repeat 2 21 0 8874 169 41 12 chr13 20116359 20117126 -81756043 + L1PA16 LINE L1 1813 2556 -4293 1060 201 19 8 chr13 20117129 20117397 -81755772 + L1PA16 LINE L1 5652 5922 -927 434 39 0 0 chr13 20117508 20117560 -81755609 + AluSp/q SINE Alu 231 282 -31 5184 121 20 13 chr13 20117560 20118412 -81754757 + L1PA16 LINE L1 5995 6860 -9 3476 185 26 49 chr13 20118419 20119332 -81753837 + L1MB7 LINE L1 5293 6184 0 1270 145 47 0 chr13 20119338 20119572 -81753597 + L1MA4A LINE L1 6059 6303 0 204 299 104 0 chr13 20119998 20120075 -81753094 + L2 LINE L2 3225 3309 -4 3078 128 16 6 chr13 20122937 20123443 -81749726 - L1PA13 LINE L1 -4 6159 5649 4359 176 39 25 chr13 20123451 20124162 -81749007 - L1PA13 LINE L1 -1510 4636 3905 2046 134 0 3 chr13 20124162 20124475 -81748694 - AluSx SINE Alu 0 312 1 4359 176 39 25 chr13 20124475 20124730 -81748439 - L1PA13 LINE L1 -2241 3905 3655 1166 179 5 0 chr13 20124896 20125103 -81748066 - MER63D DNA MER1_type -179 882 675 1094 180 213 19 chr13 20125115 20125477 -81747692 - MER63D DNA MER1_type -626 435 4 2782 171 28 7 chr13 20125560 20126349 -81746820 + L1MB7 LINE L1 5027 5828 -356 234 288 0 0 chr13 20126350 20126416 -81746753 - L2 LINE L2 -1208 2106 2041 193 326 113 28 chr13 20126417 20126558 -81746611 - MIR SINE MIR -77 185 33 476 193 128 100 chr13 20127484 20127936 -81745233 + L1MC5 LINE L1 7274 7738 -223 226 199 178 16 chr13 20127956 20128076 -81745093 - L2 LINE L2 -342 2930 2794 2162 102 20 0 chr13 20128262 20128555 -81744614 + AluSq SINE Alu 1 299 -14 458 307 130 38 chr13 20128710 20128971 -81744198 + L2 LINE L2 2852 3168 -145 1914 223 116 2 chr13 20128971 20129487 -81743682 + MER90 LTR ERV1 1 575 0 458 307 130 38 chr13 20129487 20129648 -81743521 + L2 LINE L2 3168 3313 0 1623 153 139 44 chr13 20129683 20130050 -81743119 + MER93a LTR ERV1 1 402 0 182 250 71 0 chr13 20130487 20130543 -81742626 - MER5A DNA MER1_type 0 189 130 5237 182 138 38 chr13 20130903 20132306 -81740863 - MER52A LTR ERV1 0 1755 212 390 214 98 0 chr13 20133307 20133419 -81739750 - MER67D LTR ERV1 -8 506 384 4840 170 15 4 chr13 20133454 20134438 -81738731 - L1MB4 LINE L1 -1 6179 5184 1170 176 72 71 chr13 20134487 20134852 -81738317 - MER67C LTR ERV1 -243 271 15 2200 105 0 10 chr13 20134896 20135183 -81737986 + AluSx SINE Alu 1 286 -26 483 33 0 0 chr13 20135183 20135244 -81737925 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1075 147 0 0 chr13 20135250 20135413 -81737756 + AluSq SINE Alu 134 296 -17 444 149 56 28 chr13 20136284 20136391 -81736778 - L1MC5 LINE L1 -573 7388 7279 633 216 46 100 chr13 20136505 20136623 -81736546 - L1MC5 LINE L1 -733 7228 7105 2188 124 7 0 chr13 20136623 20136930 -81736239 + AluSq SINE Alu 1 309 -4 633 216 46 100 chr13 20136930 20137220 -81735949 - L1MC5 LINE L1 -856 7105 6864 477 34 0 0 chr13 20137224 20137283 -81735886 + (CA)n Simple_repeat Simple_repeat 2 60 0 227 211 40 138 chr13 20137358 20137510 -81735659 - MLT1I LTR MaLR -272 137 1 1883 169 24 0 chr13 20137515 20137847 -81735322 + MLT2C1 LTR ERVL 1 340 -57 686 204 62 84 chr13 20137853 20138043 -81735126 + L1MB5 LINE L1 4129 4313 -1833 1462 197 124 14 chr13 20138043 20138398 -81734771 + MSTD LTR MaLR 1 394 -2 686 204 62 84 chr13 20138398 20138481 -81734688 + L1MB5 LINE L1 4313 4396 -1750 508 279 31 25 chr13 20138482 20138643 -81734526 + MLT1A2 LTR MaLR 1 162 -212 965 234 10 5 chr13 20138705 20138906 -81734263 + MLT1A2 LTR MaLR 173 374 0 3610 236 66 66 chr13 20138906 20139683 -81733486 + MLT1A2-int LTR MaLR 1 777 -594 2236 121 0 0 chr13 20139683 20139980 -81733189 - AluSg SINE Alu -13 297 1 3610 236 66 66 chr13 20139980 20140314 -81732855 + MLT1A2-int LTR MaLR 777 1115 -256 180 0 0 0 chr13 20140314 20140334 -81732835 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3610 236 66 66 chr13 20140334 20140586 -81732583 + MLT1A2-int LTR MaLR 1114 1365 -6 522 178 99 20 chr13 20140592 20140744 -81732425 + MLT1A2 LTR MaLR 8 171 -219 3089 181 55 15 chr13 20140772 20141695 -81731474 + L1MB5 LINE L1 5086 6046 -128 227 182 91 0 chr13 20141698 20141753 -81731416 - L1MB5 LINE L1 -68 6106 6047 2123 120 7 3 chr13 20141816 20142124 -81731045 + AluSx SINE Alu 1 309 -3 200 241 126 46 chr13 20143558 20143645 -81729524 + MIR SINE MIR 77 170 -92 1773 103 57 21 chr13 20143984 20144266 -81728903 - AluSq SINE Alu -21 292 1 2201 116 0 0 chr13 20144269 20144571 -81728598 - AluSx SINE Alu -10 302 1 586 144 14 65 chr13 20144571 20144710 -81728459 - AluJb SINE Alu -180 132 1 21 0 0 0 chr13 20144720 20144741 -81728428 + AT_rich Low_complexity Low_complexity 1 21 0 1720 162 26 23 chr13 20144938 20145246 -81727923 - AluJb SINE Alu -3 309 1 418 234 90 30 chr13 20145288 20145455 -81727714 + MER5B DNA MER1_type 2 178 0 18203 31 2 1 chr13 20145484 20148458 -81724711 - L1PA4 LINE L1 0 6155 3176 198 0 0 0 chr13 20148511 20148533 -81724636 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 6712 69 25 11 chr13 20148560 20150239 -81722930 - L1PA8 LINE L1 0 6172 4482 646 161 89 16 chr13 20151901 20152025 -81721144 - FLAM_C SINE Alu 0 133 1 2220 122 3 0 chr13 20152494 20152806 -81720363 - AluSq SINE Alu 0 313 1 386 239 63 25 chr13 20152978 20153137 -81720032 + MER104 DNA Tc2 4 168 -12 1163 207 80 19 chr13 20153352 20153666 -81719503 + MER2 DNA MER2_type 7 339 -6 2012 121 14 3 chr13 20153691 20153980 -81719189 - AluSx SINE Alu -20 292 1 723 173 5 70 chr13 20153980 20154100 -81719069 + MER63D DNA MER1_type 889 995 -67 2008 134 3 0 chr13 20154100 20154407 -81718762 - AluSx SINE Alu 0 308 1 723 173 5 70 chr13 20154407 20154470 -81718699 + MER63D DNA MER1_type 995 1061 -1 196 326 103 57 chr13 20154721 20154896 -81718273 - MER5A DNA MER1_type 0 189 7 302 115 19 0 chr13 20155124 20155176 -81717993 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 191 356 0 0 chr13 20155201 20155246 -81717923 - L2 LINE L2 -86 3186 3142 1325 171 103 40 chr13 20155487 20155808 -81717361 - MER2 DNA MER2_type -1 343 3 2317 107 0 0 chr13 20155948 20156248 -81716921 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 20156356 20156381 -81716788 + AT_rich Low_complexity Low_complexity 1 25 0 223 342 99 99 chr13 20156857 20157100 -81716069 + MIR SINE MIR 20 262 0 187 322 81 35 chr13 20157261 20157348 -81715821 - L2 LINE L2 -154 3118 3028 27 0 0 0 chr13 20157904 20157931 -81715238 + AT_rich Low_complexity Low_complexity 1 27 0 2139 107 0 3 chr13 20158802 20159091 -81714078 + AluSq SINE Alu 12 299 -14 256 361 10 0 chr13 20159122 20159219 -81713950 + L3b LINE CR1 1375 1472 -111 2181 95 3 10 chr13 20159283 20159577 -81713592 - AluSx SINE Alu -20 292 1 442 234 58 23 chr13 20159749 20159920 -81713249 + MER104 DNA MER2_type 4 180 0 354 216 43 58 chr13 20162222 20162361 -81710808 - L1MA10 LINE L1 -2 6332 6196 670 244 52 14 chr13 20162413 20162626 -81710543 + MER58A DNA MER1_type 3 223 -1 21 0 0 0 chr13 20164708 20164729 -81708440 + AT_rich Low_complexity Low_complexity 1 21 0 401 136 0 0 chr13 20165111 20165170 -81707999 + AluJ/FRAM SINE Alu 229 287 -25 1552 303 137 28 chr13 20165454 20165757 -81707412 + L2 LINE L2 1355 1623 -1691 902 189 146 0 chr13 20165757 20165963 -81707206 + MER46A DNA MER2_type 1 236 0 1552 303 137 28 chr13 20165963 20166628 -81706541 + L2 LINE L2 1623 2429 -885 687 268 195 49 chr13 20166712 20167138 -81706031 + L2 LINE L2 2824 3311 -2 2312 90 7 3 chr13 20167290 20167591 -81705578 - AluY SINE Alu -9 302 1 8034 114 46 10 chr13 20168883 20170138 -81703031 - HSMAR2 DNA Mariner -1 1301 1 581 258 67 21 chr13 20170359 20170599 -81702570 + L1MC5 LINE L1 6957 7207 -754 324 254 8 31 chr13 20170767 20170897 -81702272 + L1MC5 LINE L1 7292 7418 -543 443 259 54 9 chr13 20171204 20171316 -81701853 + L2 LINE L2 3197 3313 0 737 192 0 0 chr13 20171358 20171483 -81701686 - Tigger1 DNA MER2_type -1 2417 2293 2144 153 88 10 chr13 20171484 20171611 -81701558 - Tigger2 DNA MER2_type -1 2717 2601 1800 174 7 7 chr13 20171611 20171910 -81701259 - AluJb SINE Alu -12 300 2 2144 153 88 10 chr13 20171910 20172200 -81700969 - Tigger2 DNA MER2_type -117 2601 2267 393 135 0 95 chr13 20172186 20172204 -81700965 - Tigger2 DNA MER2_type -2651 67 49 * 2218 106 10 0 chr13 20172204 20172496 -81700673 + AluSc SINE Alu 1 295 -14 393 135 0 95 chr13 20172496 20172551 -81700618 - Tigger2 DNA MER2_type -2669 49 1 * 12621 133 63 17 chr13 20172551 20172994 -81700175 - Tigger1 DNA MER2_type -124 2294 1873 2035 115 0 39 chr13 20172994 20173299 -81699870 + AluSg SINE Alu 2 294 -16 12621 133 63 17 chr13 20173299 20175026 -81698143 - Tigger1 DNA MER2_type -545 1873 24 652 202 0 0 chr13 20175486 20175600 -81697569 - FLAM_C SINE Alu -24 119 6 33 25 0 0 chr13 20175650 20175690 -81697479 + AT_rich Low_complexity Low_complexity 1 40 0 2372 190 16 5 chr13 20176042 20176489 -81696680 - L1MCa LINE L1 -5954 472 21 326 321 38 72 chr13 20176493 20176839 -81696330 + L2 LINE L2 2967 3300 -13 24 67 0 0 chr13 20177646 20177691 -81695478 + AT_rich Low_complexity Low_complexity 1 45 0 468 193 182 6 chr13 20178103 20178257 -81694912 - MER5A DNA MER1_type -1 188 4 444 331 29 29 chr13 20178255 20178430 -81694739 + MER5A DNA MER1_type 1 175 -14 * 2207 94 23 16 chr13 20179268 20179577 -81693592 - AluSq SINE Alu -2 311 1 21 0 0 0 chr13 20179861 20179882 -81693287 + AT_rich Low_complexity Low_complexity 1 21 0 456 290 79 8 chr13 20179991 20180193 -81692976 + MIR SINE MIR 13 225 -37 677 124 39 8 chr13 20181566 20181695 -81691474 - L1PA16 LINE L1 0 6166 6034 326 226 107 12 chr13 20182753 20182837 -81690332 + MIR3 SINE MIR 111 202 -6 2259 108 0 0 chr13 20183582 20183879 -81689290 + AluSx SINE Alu 1 297 -15 21 71 0 0 chr13 20184279 20184321 -81688848 + AT_rich Low_complexity Low_complexity 1 42 0 188 33 0 33 chr13 20185828 20185858 -81687311 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 914 232 59 14 chr13 20187717 20187937 -81685232 + MIR SINE MIR 9 238 -24 370 213 287 0 chr13 20188718 20188840 -81684329 + MER58C DNA MER1_type 57 213 -2 1742 176 28 0 chr13 20189867 20190151 -81683018 + AluJb SINE Alu 1 292 -20 32 0 0 0 chr13 20190673 20190705 -81682464 + AT_rich Low_complexity Low_complexity 1 32 0 285 287 85 0 chr13 20191296 20191390 -81681779 + L2 LINE L2 3208 3309 -4 281 275 136 34 chr13 20191755 20191891 -81681278 - MIR SINE MIR -61 147 8 407 205 36 0 chr13 20192053 20192136 -81681033 - MER5B DNA MER1_type -1 177 92 2110 98 14 20 chr13 20192370 20192666 -81680503 - AluSc SINE Alu -15 294 1 4176 162 56 48 chr13 20192666 20193791 -81679378 - L1MB2 LINE L1 -32 6139 5002 1945 234 173 4 chr13 20194023 20194740 -81678429 - L1MB2 LINE L1 -3061 3085 2248 2809 221 59 59 chr13 20195137 20196206 -81676963 - L1M4 LINE L1 -964 5182 4114 271 258 58 67 chr13 20197549 20197669 -81675500 + MIR3 SINE MIR 65 183 -25 331 148 0 19 chr13 20199830 20199884 -81673285 + MER5A DNA MER1_type 137 189 0 1415 97 5 5 chr13 20200220 20200405 -81672764 - AluSx SINE Alu -127 185 1 433 215 50 41 chr13 20201073 20201194 -81671975 - MIR SINE MIR -30 232 111 2198 107 10 3 chr13 20202993 20203293 -81669876 - AluSc SINE Alu -7 302 1 1579 194 17 7 chr13 20203751 20204044 -81669125 - AluJo SINE Alu -16 296 1 187 267 50 33 chr13 20204560 20204620 -81668549 - MER5B DNA MER1_type -18 160 100 534 248 55 76 chr13 20204684 20204706 -81668463 + MIR SINE MIR 12 33 -229 2252 97 0 0 chr13 20204706 20205004 -81668165 + AluSx SINE Alu 1 298 -14 534 248 55 76 chr13 20205004 20205219 -81667950 + MIR SINE MIR 33 244 -18 423 284 194 27 chr13 20205286 20205508 -81667661 + MIR SINE MIR 4 262 0 1161 212 90 34 chr13 20206983 20207361 -81665808 + Charlie4a DNA MER1_type 63 461 -47 2241 65 4 0 chr13 20207471 20207750 -81665419 - AluSx SINE Alu -32 280 1 2602 37 0 0 chr13 20208514 20208814 -81664355 - AluY SINE Alu -11 300 1 273 197 141 0 chr13 20208949 20209020 -81664149 + MER53 DNA DNA 1 81 -108 496 177 108 15 chr13 20209112 20209242 -81663927 + L1MB3 LINE L1 6042 6183 0 272 171 66 26 chr13 20209312 20209388 -81663781 - MER53 DNA DNA -110 79 1 329 296 141 41 chr13 20209498 20209718 -81663451 - L1M2 LINE L1 -5930 919 678 216 0 0 0 chr13 20210650 20210674 -81662495 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 267 311 107 45 chr13 20210798 20210975 -81662194 - MIR SINE MIR -1 261 74 849 235 76 45 chr13 20211080 20211389 -81661780 - L1MC5 LINE L1 -170 7791 7460 2278 87 24 0 chr13 20211389 20211687 -81661482 - AluSq SINE Alu -8 305 1 849 235 76 45 chr13 20211687 20211862 -81661307 - L1MC5 LINE L1 -501 7460 7292 511 245 53 32 chr13 20212008 20212196 -81660973 - L1MC5 LINE L1 -728 7233 7042 259 249 0 12 chr13 20212325 20212405 -81660764 - L1MC4a LINE L1 -918 6890 6830 389 270 159 26 chr13 20214680 20214869 -81658300 - MIR SINE MIR -17 245 32 270 270 14 0 chr13 20216729 20216803 -81656366 - MLT1L LTR MaLR -50 565 491 798 205 0 48 chr13 20216946 20217112 -81656057 + FRAM SINE Alu 1 158 -18 516 201 190 17 chr13 20219994 20220168 -81653001 - MLT1J LTR MaLR -74 437 234 523 309 34 0 chr13 20220199 20220374 -81652795 - MIR SINE MIR -79 183 3 2065 176 55 2 chr13 20220750 20221148 -81652021 - MSTA LTR MaLR -9 419 1 307 228 53 35 chr13 20221160 20221274 -81651895 - L2 LINE L2 -869 2445 2330 1172 167 5 31 chr13 20221637 20221829 -81651340 - AluJo SINE Alu -125 187 1 1795 166 0 7 chr13 20224085 20224368 -81648801 + AluJo SINE Alu 18 298 -14 1252 140 6 0 chr13 20224505 20224684 -81648485 + AluSg/x SINE Alu 123 302 -10 2152 104 7 3 chr13 20224691 20224979 -81648190 + AluSg SINE Alu 7 295 -15 2165 127 7 0 chr13 20225057 20225356 -81647813 - AluSx SINE Alu -6 306 6 616 189 161 21 chr13 20225358 20225501 -81647668 - AluJb SINE Alu -14 298 136 2218 115 0 0 chr13 20226109 20226405 -81646764 - AluSx SINE Alu -16 296 1 2266 123 10 0 chr13 20226415 20226724 -81646445 - AluSx SINE Alu 0 312 1 24 0 0 0 chr13 20226773 20226797 -81646372 + AT_rich Low_complexity Low_complexity 1 24 0 358 117 0 0 chr13 20226879 20226939 -81646230 - AluJo SINE Alu -2 300 241 1167 146 0 0 chr13 20226940 20227111 -81646058 - AluJo SINE Alu -120 192 22 259 291 124 8 chr13 20227116 20227350 -81645819 + L1ME4a LINE L1 5558 5818 -303 1176 203 137 71 chr13 20227409 20227649 -81645520 + L1MC5 LINE L1 7308 7531 -430 2040 127 0 7 chr13 20227649 20227940 -81645229 - AluSc SINE Alu -20 289 1 1176 203 137 71 chr13 20227940 20228262 -81644907 + L1MC5 LINE L1 7531 7907 -54 314 252 30 82 chr13 20228376 20228511 -81644658 + L1ME4a LINE L1 5966 6093 -28 478 232 268 14 chr13 20228663 20228939 -81644230 - L1MC4a LINE L1 -1875 5933 5588 230 248 71 28 chr13 20228992 20229133 -81644036 - L1MC4a LINE L1 -2375 5433 5287 711 282 102 98 chr13 20229137 20229859 -81643310 - L1MC4a LINE L1 -862 5284 4555 2454 67 0 0 chr13 20229859 20230158 -81643011 - AluY SINE Alu -12 299 1 711 282 102 98 chr13 20230158 20230512 -81642657 - L1MC4a LINE L1 -1591 4555 4204 21 57 0 0 chr13 20230769 20230804 -81642365 + AT_rich Low_complexity Low_complexity 1 35 0 2094 124 3 10 chr13 20231198 20231504 -81641665 - AluSx SINE Alu -8 304 1 2239 108 10 0 chr13 20231932 20232237 -81640932 - AluSx SINE Alu -4 308 1 2101 99 42 0 chr13 20232251 20232534 -81640635 - AluSg SINE Alu -15 295 1 222 152 30 30 chr13 20232767 20232833 -81640336 + (TA)n Simple_repeat Simple_repeat 1 66 0 2158 99 0 3 chr13 20233031 20233314 -81639855 + AluSx SINE Alu 1 282 -30 242 28 0 28 chr13 20233317 20233353 -81639816 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 20233434 20233458 -81639711 + AT_rich Low_complexity Low_complexity 1 24 0 658 238 79 46 chr13 20235393 20235615 -81637554 - MIR SINE MIR -10 252 15 2286 119 0 0 chr13 20235615 20235925 -81637244 - AluSx SINE Alu -2 310 1 913 205 0 0 chr13 20236191 20236347 -81636822 + FRAM SINE Alu 1 155 -21 403 306 82 39 chr13 20237771 20237931 -81635238 + L2 LINE L2 1711 1890 -1424 2059 97 68 0 chr13 20237931 20238210 -81634959 - AluSq SINE Alu -15 298 1 403 306 82 39 chr13 20238210 20238330 -81634839 + L2 LINE L2 1890 2003 -1311 213 265 204 8 chr13 20238371 20238503 -81634666 + L2 LINE L2 2447 2604 -710 435 302 56 73 chr13 20238685 20238973 -81634196 + L2 LINE L2 3031 3313 0 929 163 153 42 chr13 20239538 20239625 -81633544 - MER33 DNA MER1_type -2261 324 248 1531 159 28 42 chr13 20239625 20239914 -81633255 + AluJo SINE Alu 11 295 -17 929 163 153 42 chr13 20239914 20240114 -81633055 - MER33 DNA MER1_type -2337 248 5 605 190 9 9 chr13 20240235 20240351 -81632818 + AluJb SINE Alu 1 116 -196 2287 92 0 20 chr13 20240778 20241073 -81632096 + AluSx SINE Alu 1 289 -23 25 31 0 0 chr13 20241129 20241161 -81632008 + AT_rich Low_complexity Low_complexity 1 32 0 1084 204 113 31 chr13 20241240 20241439 -81631730 + MER2 DNA MER2_type 1 237 -108 1666 157 51 3 chr13 20241439 20241732 -81631437 - AluJb SINE Alu -5 307 1 1084 204 113 31 chr13 20241732 20241850 -81631319 + MER2 DNA MER2_type 237 344 -1 1370 184 0 13 chr13 20241921 20242149 -81631020 + AluSq SINE Alu 1 225 -88 911 155 7 7 chr13 20242189 20242337 -81630832 + FRAM SINE Alu 1 148 -18 1094 250 218 32 chr13 20242391 20243383 -81629786 - HAL1 LINE L1 0 2507 1332 2201 134 74 42 chr13 20243389 20243860 -81629309 - L1MA7 LINE L1 -10 6281 5796 21 0 0 0 chr13 20243860 20243881 -81629288 + AT_rich Low_complexity Low_complexity 1 21 0 2310 76 0 9 chr13 20243884 20244213 -81628956 - LTR17 LTR ERV1 -454 326 1 2140 60 28 0 chr13 20244213 20244497 -81628672 - HERV17 LTR ERV1 0 8626 8335 295 0 0 0 chr13 20244490 20244526 -81628643 - HERV17 LTR ERV1 -1081 7545 7510 * 12246 51 1 10 chr13 20244522 20246103 -81627066 - HERV17 LTR ERV1 -1479 7147 5582 744 71 0 18 chr13 20246103 20246216 -81626953 - LTR17 LTR ERV1 -414 366 256 2913 150 34 14 chr13 20246217 20247129 -81626040 - L1MA7 LINE L1 -478 5813 4890 826 286 175 18 chr13 20247111 20247764 -81625405 - HAL1 LINE L1 -1175 1332 578 * 921 174 27 0 chr13 20248375 20248524 -81624645 + AluJb SINE Alu 1 153 -159 332 167 306 9 chr13 20248524 20248632 -81624537 + HAL1 LINE L1 1088 1227 -1280 777 185 0 7 chr13 20248633 20248768 -81624401 + AluJb SINE Alu 156 289 -23 1939 127 10 7 chr13 20250780 20251072 -81622097 + AluSq SINE Alu 1 293 -20 202 250 0 0 chr13 20251740 20251776 -81621393 + MIR SINE MIR 115 150 -112 1849 147 13 26 chr13 20251980 20252287 -81620882 + AluJb SINE Alu 1 303 -9 633 192 0 0 chr13 20253439 20253543 -81619626 + FRAM SINE Alu 41 144 -32 24 0 0 0 chr13 20253547 20253571 -81619598 + AT_rich Low_complexity Low_complexity 1 24 0 525 256 298 5 chr13 20253696 20253887 -81619282 - MIR SINE MIR -11 251 5 235 268 106 73 chr13 20254026 20254064 -81619105 + L2 LINE L2 3186 3221 -92 2353 82 7 0 chr13 20254064 20254358 -81618811 + AluSp SINE Alu 2 297 -16 235 268 106 73 chr13 20254358 20254442 -81618727 + L2 LINE L2 3221 3312 -1 2402 88 0 3 chr13 20254902 20255208 -81617961 - AluSq SINE Alu -8 305 1 346 285 161 0 chr13 20255225 20255362 -81617807 - MIR SINE MIR -27 235 77 14156 129 66 33 chr13 20255593 20255935 -81617234 + Tigger2 DNA MER2_type 3 332 -2386 2322 86 17 0 chr13 20255935 20256225 -81616944 + AluSq SINE Alu 1 295 -18 14156 129 66 33 chr13 20256225 20256612 -81616557 + Tigger2 DNA MER2_type 332 705 -2013 2041 124 21 0 chr13 20256612 20256903 -81616266 + AluSx SINE Alu 1 297 -15 14156 129 66 33 chr13 20256903 20257864 -81615305 + Tigger2 DNA MER2_type 705 1633 -1085 1934 133 3 17 chr13 20257864 20258165 -81615004 + AluJo SINE Alu 5 301 -11 14156 129 66 33 chr13 20258165 20259101 -81614068 + Tigger2 DNA MER2_type 1633 2718 0 1802 153 66 66 chr13 20259160 20259586 -81613583 - MSTA LTR MaLR -2 426 1 2028 116 17 3 chr13 20260430 20260723 -81612446 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 20260924 20260945 -81612224 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 20261223 20261266 -81611903 + AT_rich Low_complexity Low_complexity 1 43 0 1851 194 25 0 chr13 20261413 20261769 -81611400 - MLT1A1 LTR MaLR 0 365 1 3481 64 14 0 chr13 20261911 20262349 -81610820 - MLT2A1 LTR ERVL 0 444 1 660 328 45 47 chr13 20262899 20263323 -81609846 - MLT1K LTR MaLR -3 585 163 1230 130 6 0 chr13 20264093 20264270 -81608899 - AluSg/x SINE Alu -11 301 124 1624 200 20 8 chr13 20264707 20265062 -81608107 + MLT2D LTR ERVL 1 359 -55 543 53 0 0 chr13 20265064 20265139 -81608030 + (TC)n Simple_repeat Simple_repeat 2 76 0 * 636 14 0 0 chr13 20265138 20265211 -81607958 + (TA)n Simple_repeat Simple_repeat 2 74 0 905 230 30 26 chr13 20265357 20265566 -81607603 + MLT2D LTR ERVL 149 361 -53 543 53 0 0 chr13 20265566 20265641 -81607528 + (TC)n Simple_repeat Simple_repeat 2 76 0 905 230 30 26 chr13 20265641 20265696 -81607473 + MLT2D LTR ERVL 361 414 0 3704 112 11 20 chr13 20265871 20266424 -81606745 + LTR14 LTR ERVK 1 548 0 600 243 113 108 chr13 20267190 20267225 -81605944 + MLT1F1 LTR MaLR 15 48 -494 1784 131 91 0 chr13 20267225 20267499 -81605670 - AluSx SINE Alu -13 299 1 600 243 113 108 chr13 20267499 20267924 -81605245 + MLT1F1 LTR MaLR 48 477 -65 235 199 211 70 chr13 20268233 20268389 -81604780 + MIR SINE MIR 85 262 0 245 337 77 36 chr13 20268444 20268640 -81604529 + L2 LINE L2 1989 2192 -1122 229 287 122 43 chr13 20269798 20269913 -81603256 + L2 LINE L2 2933 3056 -257 483 202 57 16 chr13 20270166 20270290 -81602879 - MER94 DNA DNA -4 130 2 1719 167 53 21 chr13 20270495 20270873 -81602296 - MLT1B LTR MaLR 0 390 1 2177 120 0 0 chr13 20271007 20271298 -81601871 - AluSx SINE Alu -21 291 1 23 33 0 0 chr13 20271370 20271400 -81601769 + AT_rich Low_complexity Low_complexity 1 30 0 1718 129 12 74 chr13 20271413 20271771 -81601398 + AluSx SINE Alu 1 312 0 481 295 155 14 chr13 20272034 20272241 -81600928 + MER115 DNA AcHobo 455 690 -3 2138 125 0 0 chr13 20272241 20272536 -81600633 - AluSx SINE Alu -17 295 1 339 282 204 10 chr13 20272549 20272755 -81600414 - MIR SINE MIR -14 248 3 817 268 338 6 chr13 20274007 20274481 -81598688 + L2 LINE L2 2319 2949 -365 260 105 0 0 chr13 20274529 20274567 -81598602 - MER92C LTR ERV1 -26 528 491 538 215 70 7 chr13 20274633 20274785 -81598384 - MER92B LTR ERV1 -389 165 5 350 182 114 0 chr13 20275241 20275329 -81597840 - Charlie1 DNA MER1_type -2336 425 328 492 105 324 0 chr13 20275345 20275450 -81597719 - MER21B LTR ERV1 -396 467 329 703 270 102 33 chr13 20275450 20275724 -81597445 + L2 LINE L2 3020 3312 -1 31 68 0 0 chr13 20276942 20277001 -81596168 + AT_rich Low_complexity Low_complexity 1 59 0 2075 113 7 7 chr13 20277193 20277485 -81595684 - AluSx SINE Alu -18 294 3 212 269 127 49 chr13 20281398 20281547 -81591622 - MIR SINE MIR -61 147 11 482 290 19 13 chr13 20282331 20282486 -81590683 - MLT1I LTR MaLR -39 370 215 395 292 36 29 chr13 20282622 20282759 -81590410 - MIR SINE MIR -105 157 20 296 104 21 0 chr13 20283754 20283802 -81589367 - L2 LINE L2 0 3313 3265 294 344 0 10 chr13 20283802 20283898 -81589271 - MIR SINE MIR -156 106 12 240 194 0 48 chr13 20284139 20284201 -81588968 - MER69 DNA AcHobo -5 2521 2463 282 29 0 0 chr13 20284201 20284236 -81588933 + (CAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr13 20286221 20286250 -81586919 + AT_rich Low_complexity Low_complexity 1 29 0 421 268 0 36 chr13 20286250 20286418 -81586751 + L1M4 LINE L1 60 221 -6321 635 318 74 12 chr13 20287216 20287458 -81585711 - MIR SINE MIR 0 262 6 239 185 31 31 chr13 20287613 20287678 -81585491 - L1MC5 LINE L1 -52 7909 7845 860 192 14 0 chr13 20287878 20288024 -81585145 + FRAM SINE Alu 11 158 -18 1614 142 22 41 chr13 20288289 20288605 -81584564 - L1MC1 LINE L1 -1 6332 6023 369 332 164 0 chr13 20289415 20289623 -81583546 + MIR SINE MIR 2 243 -19 422 309 46 7 chr13 20290521 20290673 -81582496 + MIR SINE MIR 48 205 -57 882 273 29 3 chr13 20290942 20291320 -81581849 - LTR16A LTR ERVL -9 441 27 237 235 0 0 chr13 20291355 20291406 -81581763 - L3 LINE CR1 -192 1385 1335 342 258 45 0 chr13 20291504 20291636 -81581533 + (CATATA)n Simple_repeat Simple_repeat 2 139 0 472 272 66 33 chr13 20291724 20291937 -81581232 - L2 LINE L2 -947 2367 2148 391 300 69 6 chr13 20292007 20292167 -81581002 + Charlie8 DNA MER1_type 79 248 -2169 207 0 0 0 chr13 20292260 20292283 -81580886 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2226 41 0 0 chr13 20292283 20292551 -81580618 - L1PA5 LINE L1 -11 6143 5876 2187 93 3 23 chr13 20292670 20292972 -81580197 - AluSq SINE Alu -17 296 1 407 263 91 0 chr13 20293012 20293187 -81579982 - L2 LINE L2 -1404 1910 1720 647 226 0 0 chr13 20294396 20294511 -81578658 - FLAM_A SINE Alu -18 115 1 276 346 96 8 chr13 20294522 20294681 -81578488 - MER5A DNA MER1_type -3 186 6 213 261 0 31 chr13 20295536 20295601 -81577568 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 397 335 115 56 chr13 20295618 20295887 -81577282 - L2 LINE L2 -17 3255 2971 47 53 0 0 chr13 20295954 20296029 -81577140 + AT_rich Low_complexity Low_complexity 1 75 0 1915 229 88 8 chr13 20296073 20296689 -81576480 - L1MC4 LINE L1 -140 7902 7238 475 155 24 11 chr13 20296704 20296826 -81576343 - L1MC4 LINE L1 -763 7074 6884 5314 169 26 8 chr13 20297256 20299304 -81573865 - L1PA16 LINE L1 -9 6157 4077 362 195 133 23 chr13 20299377 20299505 -81573664 - L1ME LINE L1 -422 5699 5558 1799 156 3 3 chr13 20299528 20299816 -81573353 - AluSx SINE Alu -24 288 1 332 241 136 55 chr13 20299834 20300091 -81573078 + L1MC/D LINE L1 4567 4844 -1302 1796 136 0 0 chr13 20300349 20300599 -81572570 + AluJb SINE Alu 14 263 -49 1015 224 211 9 chr13 20300653 20301099 -81572070 + L1MC/D LINE L1 5254 5789 -2019 721 263 14 30 chr13 20301215 20301447 -81571722 - L1MC4a LINE L1 -339 5822 5711 2165 112 7 3 chr13 20301447 20301743 -81571426 + AluSq SINE Alu 3 299 -14 721 263 14 30 chr13 20301743 20301774 -81571395 - L1MC4a LINE L1 -450 5711 5681 342 0 0 0 chr13 20303203 20303241 -81569928 + (CA)n Simple_repeat Simple_repeat 2 39 0 297 51 0 0 chr13 20303241 20303280 -81569889 + (CAT)n Simple_repeat Simple_repeat 1 39 0 360 332 91 53 chr13 20303968 20304422 -81568747 - L2 LINE L2 -5 3267 2795 189 0 0 0 chr13 20304539 20304560 -81568609 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 787 135 5 4 chr13 20304560 20304760 -81568409 - AluJb SINE Alu -33 279 2 234 231 96 39 chr13 20305342 20305446 -81567723 - LTR33A LTR ERVL -359 164 55 1819 191 7 55 chr13 20305634 20306068 -81567101 - MLT2D LTR ERVL -1 413 1 1469 212 140 80 chr13 20306914 20307527 -81565642 + MLT1E1 LTR MaLR 1 650 -4 1064 218 3 70 chr13 20307895 20308179 -81564990 + Tigger7 DNA MER2_type 2 266 -284 467 219 0 0 chr13 20308177 20308273 -81564896 + Tigger7 DNA MER2_type 2389 2484 -3 * 301 78 20 0 chr13 20308378 20308429 -81564740 - AluJo SINE Alu -1 301 250 1095 173 78 5 chr13 20308431 20308622 -81564547 - AluJo SINE Alu -107 205 1 2188 110 0 0 chr13 20308862 20309174 -81563995 - AluSc SINE Alu 0 312 1 323 377 9 9 chr13 20309191 20309297 -81563872 - MER91A DNA MER1_type -56 140 35 987 127 61 0 chr13 20309560 20309725 -81563444 - MER58B DNA MER1_type 0 341 167 207 139 0 0 chr13 20312213 20312249 -81560920 + (T)n Simple_repeat Simple_repeat 1 36 0 804 178 51 13 chr13 20313168 20313325 -81559844 - FRAM SINE Alu -13 163 1 28 0 0 0 chr13 20313911 20313939 -81559230 + AT_rich Low_complexity Low_complexity 1 28 0 1354 232 146 31 chr13 20314061 20314514 -81558655 + MLT1D LTR MaLR 1 505 0 25 65 0 0 chr13 20314560 20314606 -81558563 + AT_rich Low_complexity Low_complexity 1 46 0 33 0 0 0 chr13 20314852 20314885 -81558284 + AT_rich Low_complexity Low_complexity 1 33 0 2044 163 20 45 chr13 20315584 20315984 -81557185 - MLT1B LTR MaLR 0 390 1 6236 43 4 0 chr13 20316290 20317082 -81556087 - L1PA5 LINE L1 -2 6152 5358 1111 289 20 31 chr13 20317098 20317455 -81555714 + LTR16C LTR ERVL 139 491 0 253 383 29 0 chr13 20317456 20317631 -81555538 + HERV16 LTR ERVL 2 181 -4815 1316 374 70 17 chr13 20317690 20318046 -81555123 + THE1C LTR MaLR 1 375 0 255 309 105 42 chr13 20318753 20318944 -81554225 + HERV16 LTR ERVL 783 985 -4011 3835 188 28 12 chr13 20319124 20319942 -81553227 + Tigger6a DNA MER2_type 24 854 -229 408 257 112 50 chr13 20320038 20320279 -81552890 + HERV16 LTR ERVL 1718 1973 -3681 1743 191 2 72 chr13 20320316 20320735 -81552434 + MLT1B LTR MaLR 1 390 0 950 308 104 19 chr13 20320743 20321588 -81551581 + HERV16 LTR ERVL 2043 2964 -2032 927 324 23 13 chr13 20321599 20321991 -81551178 + HERV16 LTR ERVL 3863 4258 -1396 309 188 35 9 chr13 20322083 20322342 -81550827 + AluJo SINE Alu 1 302 0 356 368 35 37 chr13 20322829 20323177 -81549992 + HERV16 LTR ERVL 4974 5320 -444 1309 151 101 22 chr13 20324152 20324216 -81548953 - L1PB4 LINE L1 -7 6149 6091 2766 191 71 41 chr13 20324216 20324922 -81548247 - LTR8A LTR ERV1 0 727 1 1309 151 101 22 chr13 20324922 20325135 -81548034 - L1PB4 LINE L1 -65 6091 5850 3107 120 49 44 chr13 20325466 20326001 -81547168 + MER4D LTR ERV1 1 541 -362 1074 85 0 182 chr13 20326001 20326237 -81546932 - 7SK RNA RNA 0 193 1 3107 120 49 44 chr13 20326237 20326292 -81546877 + MER4D LTR ERV1 541 594 -309 1214 150 101 28 chr13 20326302 20326589 -81546580 + THE1C LTR MaLR 2 309 -66 1553 126 3 86 chr13 20326595 20326897 -81546272 + MER4E LTR ERV1 502 778 -1 2460 88 3 0 chr13 20327226 20327532 -81545637 - AluSx SINE Alu -5 307 1 338 211 172 72 chr13 20327754 20327934 -81545235 - MIR SINE MIR -9 253 56 2370 100 24 19 chr13 20328245 20328614 -81544555 + L1PA13 LINE L1 5790 6160 -3 702 243 35 0 chr13 20328615 20328788 -81544381 + LTR16C LTR ERVL 313 491 0 342 0 0 0 chr13 20329688 20329726 -81543443 + (CA)n Simple_repeat Simple_repeat 1 38 0 254 26 53 0 chr13 20329873 20329911 -81543258 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 15009 28 2 0 chr13 20330455 20333020 -81540149 - L1PA2 LINE L1 0 6155 3589 1887 77 0 0 chr13 20333180 20333428 -81539741 - L1PA7 LINE L1 -5 6149 5902 1286 99 80 0 chr13 20333461 20333662 -81539507 + MER30 DNA MER1_type 14 230 0 523 296 38 23 chr13 20334559 20334821 -81538348 + HAL1b LINE L1 360 1666 -734 21 57 0 0 chr13 20335102 20335137 -81538032 + AT_rich Low_complexity Low_complexity 1 35 0 651 148 8 8 chr13 20335174 20335296 -81537873 + L1M3 LINE L1 5470 5591 -743 6637 256 19 23 chr13 20335396 20337770 -81535399 - L1P LINE L1 -2075 4071 1708 616 154 27 0 chr13 20337788 20337898 -81535271 - L1MB3 LINE L1 -237 5946 5834 25537 40 39 2 chr13 20337999 20341373 -81531796 - L1P LINE L1 -2646 3500 3 201 239 0 42 chr13 20341377 20341448 -81531721 + T-rich Low_complexity Low_complexity 5 72 0 250 271 47 0 chr13 20341611 20341718 -81531451 - L1ME LINE L1 -295 5875 5764 234 229 16 16 chr13 20341930 20341991 -81531178 - L1ME LINE L1 -671 5495 5435 389 283 91 20 chr13 20342086 20342284 -81530885 - L1ME LINE L1 -807 5339 5128 23 68 0 0 chr13 20342284 20342328 -81530841 + AT_rich Low_complexity Low_complexity 1 44 0 533 180 0 0 chr13 20342478 20342567 -81530602 - FRAM SINE Alu -68 108 20 996 168 55 0 chr13 20342574 20342794 -81530375 - L1MB2 LINE L1 -2 6169 5938 29 0 0 0 chr13 20342794 20342823 -81530346 + AT_rich Low_complexity Low_complexity 1 29 0 2878 135 57 4 chr13 20342827 20343352 -81529817 - L1PA16 LINE L1 -22 6144 5592 1757 207 30 17 chr13 20343346 20343815 -81529354 - L1 LINE L1 -1446 4700 4226 * 406 304 52 36 chr13 20394169 20394740 -81478429 + L1ME3A LINE L1 5260 5873 -297 186 43 0 0 chr13 20394784 20394807 -81478362 + (TA)n Simple_repeat Simple_repeat 1 23 0 7407 42 0 0 chr13 20394822 20395953 -81477216 + L1PA5 LINE L1 5020 6150 -4 2375 60 0 0 chr13 20396066 20396382 -81476787 - AluY SINE Alu 0 316 1 217 227 27 13 chr13 20396696 20396771 -81476398 + (TA)n Simple_repeat Simple_repeat 2 77 0 27 49 0 0 chr13 20396967 20397008 -81476161 + AT_rich Low_complexity Low_complexity 1 41 0 676 307 98 17 chr13 20397473 20398115 -81475054 - L1MEc LINE L1 -4683 1713 1020 21 71 0 0 chr13 20399643 20399685 -81473484 + AT_rich Low_complexity Low_complexity 1 42 0 2543 167 34 85 chr13 20400590 20400694 -81472475 - LTR9 LTR ERV1 0 612 504 1858 122 7 11 chr13 20400694 20401001 -81472168 + AluSc SINE Alu 1 306 0 2543 167 34 85 chr13 20401001 20401540 -81471629 - LTR9 LTR ERV1 -108 504 1 429 20 0 0 chr13 20402791 20402841 -81470328 + (TG)n Simple_repeat Simple_repeat 2 51 0 854 265 43 12 chr13 20403126 20403379 -81469790 - MIR SINE MIR 0 262 2 2135 128 0 0 chr13 20403633 20403930 -81469239 - AluSx SINE Alu -15 297 1 227 357 22 0 chr13 20403930 20404022 -81469147 - MER5A DNA MER1_type -49 140 36 1132 82 0 0 chr13 20404580 20404715 -81468454 + AluSq/x SINE Alu 2 136 -177 2085 129 3 3 chr13 20404715 20405025 -81468144 + AluSx SINE Alu 1 310 -2 2262 50 50 20 chr13 20405384 20405682 -81467487 + AluY SINE Alu 1 307 -4 4555 138 5 19 chr13 20406970 20407726 -81465443 - L1MC1 LINE L1 -1 6612 5867 2123 111 10 10 chr13 20407731 20408038 -81465131 + AluSx SINE Alu 1 307 -5 450 127 0 0 chr13 20408038 20408109 -81465060 + (GA)n Simple_repeat Simple_repeat 1 71 0 1877 142 43 33 chr13 20408109 20408524 -81464645 - L1MC1 LINE L1 -742 5871 5449 5763 232 48 4 chr13 20408639 20410170 -81462999 - L1MC1 LINE L1 -1204 5222 3625 3947 216 31 35 chr13 20410678 20412043 -81461126 - L1MC1 LINE L1 -2792 3634 2265 2275 110 3 0 chr13 20412043 20412343 -81460826 + AluSp SINE Alu 1 301 -12 282 56 0 0 chr13 20412343 20412379 -81460790 + (TA)n Simple_repeat Simple_repeat 2 37 0 3947 216 31 35 chr13 20412379 20412613 -81460556 - L1MC1 LINE L1 -4159 2267 2038 967 164 223 50 chr13 20412626 20413109 -81460060 - LTR29 LTR ERV1 0 622 1 8646 184 77 44 chr13 20413110 20414535 -81458634 - L1MC1 LINE L1 -4413 2013 507 955 41 8 0 chr13 20414535 20414656 -81458513 + L1PA4 LINE L1 6034 6155 0 8646 184 77 44 chr13 20414656 20415174 -81457995 - L1MC1 LINE L1 -5919 507 7 223 278 22 0 chr13 20415822 20415912 -81457257 + T-rich Low_complexity Low_complexity 2 93 0 2127 105 14 3 chr13 20416208 20416504 -81456665 - AluSx SINE Alu -13 299 1 490 317 48 35 chr13 20416504 20416734 -81456435 + MLT1I LTR MaLR 176 408 -1 1655 259 111 9 chr13 20417054 20417611 -81455558 - L1ME3A LINE L1 -230 5940 5327 1209 188 150 11 chr13 20417613 20417879 -81455290 - MLT1D LTR MaLR -194 311 9 1570 219 33 22 chr13 20418403 20418764 -81454405 - MLT1A1 LTR MaLR 0 365 1 301 234 206 27 chr13 20418944 20419071 -81454098 + MIR3 SINE MIR 15 173 -89 397 288 66 54 chr13 20419191 20419590 -81453579 - MLT1K LTR MaLR -49 539 106 592 291 60 5 chr13 20421063 20421262 -81451907 + MIR SINE MIR 53 262 0 563 310 88 0 chr13 20421271 20421510 -81451659 + MIR SINE MIR 3 262 0 553 262 204 16 chr13 20422359 20422550 -81450619 - MIR SINE MIR -10 252 26 2306 152 31 14 chr13 20422642 20423063 -81450106 + MSTC LTR MaLR 1 428 0 355 308 56 85 chr13 20423208 20423598 -81449571 + L1M4 LINE L1 497 875 -5667 1440 265 134 3 chr13 20423667 20424300 -81448869 + L1M4 LINE L1 879 1594 -4948 27 49 0 0 chr13 20424352 20424393 -81448776 + AT_rich Low_complexity Low_complexity 1 41 0 774 253 37 81 chr13 20424423 20424858 -81448311 + L1M4 LINE L1 2140 2555 -4270 231 337 0 10 chr13 20424859 20424960 -81448209 + (TA)n Simple_repeat Simple_repeat 1 100 0 2535 244 67 12 chr13 20424973 20425872 -81447297 + L1M4 LINE L1 2588 3495 -3149 2234 97 7 0 chr13 20427224 20427522 -81445647 - AluSg SINE Alu -10 300 1 31 0 0 0 chr13 20427531 20427562 -81445607 + AT_rich Low_complexity Low_complexity 1 31 0 312 276 9 67 chr13 20427925 20428030 -81445139 + L2 LINE L2 3174 3272 0 1812 154 165 8 chr13 20428187 20428557 -81444612 - MSTA LTR MaLR 0 428 1 2072 131 3 10 chr13 20428891 20429205 -81443964 + AluSx SINE Alu 1 312 0 2161 179 26 21 chr13 20429423 20429853 -81443316 - MSTB1 LTR MaLR 0 432 1 2091 115 16 20 chr13 20430066 20430594 -81442575 + L1P4 LINE L1 5056 5582 -579 606 255 170 12 chr13 20430928 20431175 -81441994 - LTR33 LTR ERVL -235 286 1 23 33 0 0 chr13 20431569 20431599 -81441570 + AT_rich Low_complexity Low_complexity 1 30 0 399 235 156 28 chr13 20431601 20431865 -81441304 + L1ME4a LINE L1 5332 5622 -499 358 277 71 13 chr13 20431886 20432041 -81441128 + L1ME4a LINE L1 5733 5896 -225 608 87 11 0 chr13 20432122 20432214 -81440955 + (TA)n Simple_repeat Simple_repeat 2 94 0 21 0 0 0 chr13 20432683 20432704 -81440465 + AT_rich Low_complexity Low_complexity 1 21 0 1757 196 57 40 chr13 20433277 20433732 -81439437 - MLT1C LTR MaLR -4 463 1 326 268 21 0 chr13 20433901 20433998 -81439171 - MER103 DNA DNA -1 165 67 1463 248 35 28 chr13 20435709 20436133 -81437036 + LTR40a LTR ERVL 1 427 -92 440 240 53 50 chr13 20436310 20436502 -81436667 - MLT1I LTR MaLR -2 407 266 443 276 80 72 chr13 20437152 20437523 -81435646 + L1M4 LINE L1 3190 3557 -2589 1946 178 87 12 chr13 20437523 20437950 -81435219 + MER65C LTR ERV1 1 459 -2 443 276 80 72 chr13 20437950 20438026 -81435143 + L1M4 LINE L1 3557 3631 -2515 1994 147 16 0 chr13 20438026 20438333 -81434836 - AluJo SINE Alu 0 312 1 443 276 80 72 chr13 20438333 20438453 -81434716 + L1M4 LINE L1 3631 3745 -2401 1622 242 80 54 chr13 20438465 20439187 -81433982 + Charlie2a DNA MER1_type 1604 2344 -518 42596 35 21 3 chr13 20439216 20445256 -81427913 + L1PA3 LINE L1 3 6153 -2 235 291 18 0 chr13 20445290 20445345 -81427824 - MER5A DNA MER1_type -127 62 7 555 297 137 5 chr13 20446308 20446527 -81426642 + MIR SINE MIR 14 261 -1 538 308 109 48 chr13 20446552 20446864 -81426305 - L2 LINE L2 0 3272 2942 232 273 15 15 chr13 20447037 20447103 -81426066 + L2 LINE L2 3206 3271 -1 896 148 23 115 chr13 20447962 20448179 -81424990 + MER67D LTR ERV1 1 197 -317 189 0 0 0 chr13 20448306 20448327 -81424842 + (A)n Simple_repeat Simple_repeat 1 21 0 193 50 25 50 chr13 20448884 20448924 -81424245 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 352 275 28 21 chr13 20449772 20449914 -81423255 + HAL1b LINE L1 55 197 -1151 250 245 0 0 chr13 20451008 20451061 -81422108 + L2 LINE L2 3253 3305 -8 1177 105 0 0 chr13 20452625 20452778 -81420391 + AluSx SINE Alu 1 153 -159 1376 201 38 100 chr13 20454007 20454089 -81419080 + MLT1C LTR MaLR 1 87 -380 1182 367 89 35 chr13 20454089 20454495 -81418674 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 20454495 20454518 -81418651 + MLT1C LTR MaLR 87 110 -357 2047 172 83 2 chr13 20454518 20454914 -81418255 + MSTA LTR MaLR 1 428 0 1376 201 38 100 chr13 20454914 20455294 -81417875 + MLT1C LTR MaLR 110 467 0 1931 99 102 3 chr13 20455491 20455774 -81417395 + AluSp SINE Alu 2 312 -1 347 307 112 57 chr13 20455909 20456258 -81416911 - L2 LINE L2 -675 2639 2272 2126 96 10 20 chr13 20457095 20457397 -81415772 + AluSq SINE Alu 1 299 -14 284 265 142 43 chr13 20458846 20459148 -81414021 - L1M4 LINE L1 -815 5331 5000 201 266 0 47 chr13 20459241 20459305 -81413864 - MIR SINE MIR -105 157 97 942 146 12 130 chr13 20459678 20459925 -81413244 + MER20 DNA MER1_type 2 219 0 2508 169 14 86 chr13 20459984 20460541 -81412628 + MLT2B1 LTR ERVL 1 517 -3 843 284 11 17 chr13 20461652 20461906 -81411263 - MIR SINE MIR -12 250 3 905 223 69 89 chr13 20462900 20463488 -81409681 + L1M4c LINE L1 1510 2184 -4200 1344 174 50 129 chr13 20463515 20464129 -81409040 + L1M4c LINE L1 2869 3434 -2948 2041 236 51 62 chr13 20464581 20465705 -81407464 + L1M4c LINE L1 2030 3151 -3231 6207 74 6 28 chr13 20465883 20466751 -81406418 + SVA Other Other 535 1383 -3 9435 177 30 8 chr13 20466760 20468538 -81404631 - L1 LINE L1 -1287 4859 3033 1515 115 0 5 chr13 20468538 20468746 -81404423 + AluSp SINE Alu 107 313 0 9435 177 30 8 chr13 20468746 20468936 -81404233 - L1 LINE L1 -3113 3033 2849 3116 213 50 34 chr13 20469051 20469934 -81403235 - L1M4 LINE L1 -5007 1535 639 536 295 107 50 chr13 20471276 20471595 -81401574 - L2 LINE L2 -696 2618 2282 361 245 47 19 chr13 20471596 20471702 -81401467 + MER94 DNA DNA 1 109 -25 518 292 51 31 chr13 20471705 20471900 -81401269 - L2 LINE L2 -1014 2300 2102 21 57 0 0 chr13 20472070 20472105 -81401064 + AT_rich Low_complexity Low_complexity 1 35 0 357 211 0 0 chr13 20472264 20472335 -81400834 + MIR SINE MIR 139 209 -53 2616 88 8 0 chr13 20472358 20472710 -81400459 - THE1A LTR MaLR 0 355 1 24 32 0 0 chr13 20472724 20472755 -81400414 + AT_rich Low_complexity Low_complexity 1 31 0 400 269 134 17 chr13 20472755 20472874 -81400295 - FLAM_A SINE Alu 0 133 1 558 215 173 25 chr13 20472968 20473205 -81399964 - HAL1 LINE L1 -310 2197 1926 350 300 127 17 chr13 20473200 20473547 -81399622 - L1M4 LINE L1 -948 5198 4814 * 1152 264 64 30 chr13 20473637 20474043 -81399126 - HAL1 LINE L1 -613 1894 1475 702 278 137 38 chr13 20475108 20475583 -81397586 - HAL1 LINE L1 -1324 1183 662 355 322 90 37 chr13 20475635 20475827 -81397342 - HAL1 LINE L1 -1940 567 358 2349 78 0 0 chr13 20475827 20476122 -81397047 - AluY SINE Alu -16 295 1 355 322 90 37 chr13 20476122 20476174 -81396995 - HAL1 LINE L1 -2149 358 310 272 231 0 0 chr13 20476179 20476231 -81396938 + LTR30 LTR ERV1 1 52 -670 1500 111 193 182 chr13 20476231 20476754 -81396415 + LTR12 LTR ERV1 53 581 -133 202 399 54 14 chr13 20478788 20478936 -81394233 + L2 LINE L2 2906 3059 -213 256 174 43 43 chr13 20478995 20479064 -81394105 - MER116 DNA Mariner -4 76 8 24 53 0 0 chr13 20479415 20479453 -81393716 + AT_rich Low_complexity Low_complexity 1 38 0 305 348 57 8 chr13 20479642 20479886 -81393283 + L1ME LINE L1 5547 5802 -319 582 246 32 27 chr13 20480411 20480631 -81392538 - MER20B DNA MER1_type -30 753 533 1122 201 98 38 chr13 20481977 20482295 -81390874 + MER2 DNA MER2_type 1 337 -8 1213 145 36 0 chr13 20483618 20483839 -81389330 - L1MA8 LINE L1 -147 6144 5916 804 140 51 6 chr13 20483839 20483988 -81389181 + L1MA8 LINE L1 6124 6287 -4 230 324 101 0 chr13 20484206 20484354 -81388815 - MER103 DNA DNA -1 165 3 1722 185 24 18 chr13 20484362 20484448 -81388721 - MER2 DNA MER2_type 0 344 260 2204 110 0 7 chr13 20484448 20484748 -81388421 + AluSx SINE Alu 1 298 -14 1722 185 24 18 chr13 20484748 20485002 -81388167 - MER2 DNA MER2_type -84 260 2 6779 171 158 43 chr13 20485004 20486578 -81386591 + MER52A LTR ERV1 1 1755 0 361 233 38 75 chr13 20487024 20487157 -81386012 + L2 LINE L2 3095 3222 -91 954 207 14 100 chr13 20487161 20487517 -81385652 - L1MA4 LINE L1 -2 6298 5980 323 360 20 28 chr13 20487580 20487833 -81385336 - L2 LINE L2 -1058 2256 2006 266 290 159 28 chr13 20489083 20489190 -81383979 + MIR SINE MIR 16 136 -72 296 296 227 8 chr13 20490376 20490508 -81382661 - MIR3 SINE MIR -10 198 38 428 328 31 13 chr13 20490816 20491045 -81382124 + L2 LINE L2 636 868 -2446 255 216 4 43 chr13 20491087 20491353 -81381816 + AluJo SINE Alu 1 282 -20 193 387 118 14 chr13 20491383 20491815 -81381354 + L2 LINE L2 976 1452 -1862 815 276 68 41 chr13 20491871 20492457 -81380712 - L1M4 LINE L1 -1175 4971 4370 979 332 98 33 chr13 20492590 20493162 -81380007 + L2 LINE L2 2368 2976 -338 352 220 220 10 chr13 20493164 20493264 -81379905 + L2 LINE L2 3190 3310 -3 1886 125 68 0 chr13 20493524 20493803 -81379366 - AluSx SINE Alu -14 298 1 320 318 70 23 chr13 20493813 20493942 -81379227 + L2 LINE L2 3171 3305 -8 28 0 0 0 chr13 20494800 20494828 -81378341 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr13 20494976 20495014 -81378155 + (ATG)n Simple_repeat Simple_repeat 2 39 0 1713 264 30 6 chr13 20496107 20496608 -81376561 - L1M4 LINE L1 -1950 4196 3684 27 0 0 0 chr13 20496612 20496639 -81376530 + AT_rich Low_complexity Low_complexity 1 27 0 4438 193 16 33 chr13 20496641 20497659 -81375510 - L1MA8 LINE L1 -7 6284 5285 224 291 128 40 chr13 20497772 20497920 -81375249 + L2 LINE L2 2744 2904 -410 2586 43 0 0 chr13 20498155 20498459 -81374710 - AluY SINE Alu -7 304 1 2139 91 7 3 chr13 20498557 20498855 -81374314 + AluSq SINE Alu 12 310 -3 28 48 0 0 chr13 20499713 20499755 -81373414 + AT_rich Low_complexity Low_complexity 1 42 0 460 266 189 31 chr13 20500218 20500477 -81372692 - L2 LINE L2 0 3313 3014 1402 195 76 12 chr13 20500804 20501147 -81372022 + MLT1A1 LTR MaLR 1 365 0 270 311 94 0 chr13 20501914 20502020 -81371149 - MIR SINE MIR -38 224 109 376 349 77 40 chr13 20502148 20502592 -81370577 - L2 LINE L2 -1935 1379 920 2344 91 3 0 chr13 20502929 20503236 -81369933 + AluSg SINE Alu 1 308 -2 282 248 79 30 chr13 20503622 20503723 -81369446 + L2 LINE L2 3204 3309 -4 2448 262 88 52 chr13 20505315 20506727 -81366442 + HAL1 LINE L1 1022 2485 -22 588 169 17 8 chr13 20506729 20506847 -81366322 - AluJo SINE Alu -8 304 186 740 151 0 0 chr13 20506860 20506979 -81366190 - AluJo SINE Alu -192 120 2 32 26 0 0 chr13 20508276 20508315 -81364854 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr13 20509364 20509386 -81363783 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 20509449 20509472 -81363697 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr13 20509773 20509797 -81363372 + AT_rich Low_complexity Low_complexity 1 24 0 317 364 29 35 chr13 20510509 20510877 -81362292 + L2 LINE L2 2695 3056 -216 184 156 0 67 chr13 20511911 20511956 -81361213 - L2 LINE L2 0 3313 3272 259 270 70 9 chr13 20512062 20512177 -81360992 - L1MC4 LINE L1 -21 8021 7900 278 256 39 0 chr13 20512182 20512311 -81360858 + (TA)n Simple_repeat Simple_repeat 2 135 0 1848 221 86 60 chr13 20512314 20512992 -81360177 - L1MC4 LINE L1 -136 7906 7212 265 235 0 39 chr13 20513304 20513406 -81359763 + CT-rich Low_complexity Low_complexity 1 98 0 275 324 176 14 chr13 20513542 20513752 -81359417 + MIR SINE MIR 4 247 -15 187 358 46 28 chr13 20516283 20516392 -81356777 - L2 LINE L2 -12 3301 3191 620 195 0 16 chr13 20516587 20516715 -81356454 - MIR SINE MIR -6 256 131 293 270 146 0 chr13 20516973 20517062 -81356107 - MIR SINE MIR -147 115 14 1836 274 96 22 chr13 20520685 20521487 -81351682 - L1ME3A LINE L1 -38 6115 5255 225 0 0 0 chr13 20521576 20521601 -81351568 + (TG)n Simple_repeat Simple_repeat 2 26 0 1262 273 68 25 chr13 20521602 20522048 -81351121 - L1ME3A LINE L1 -1045 5084 4599 2233 115 0 3 chr13 20522048 20522343 -81350826 - AluSg SINE Alu -15 295 2 1262 273 68 25 chr13 20522343 20522562 -81350607 - L1ME3A LINE L1 -1530 4599 4391 2091 113 24 0 chr13 20522566 20522858 -81350311 - AluSx SINE Alu -13 299 1 1072 284 102 9 chr13 20522880 20523274 -81349895 - LTR16A LTR ERVL -2 455 7 2676 163 12 5 chr13 20523468 20523891 -81349278 - MSTB LTR MaLR 0 426 1 2277 207 32 98 chr13 20524128 20524849 -81348320 - LTR8 LTR ERV1 -18 673 1 441 212 122 14 chr13 20524934 20524955 -81348214 + L1M4 LINE L1 2902 2919 -3227 1563 173 0 4 chr13 20524955 20525209 -81347960 + AluJo SINE Alu 41 293 -19 441 212 122 14 chr13 20525209 20525409 -81347760 + L1M4 LINE L1 2919 3147 -2999 30 45 0 0 chr13 20525543 20525587 -81347582 + AT_rich Low_complexity Low_complexity 1 44 0 739 271 83 58 chr13 20525588 20525869 -81347300 - L1MEd LINE L1 -4576 1734 1461 2156 109 7 7 chr13 20525869 20526173 -81346996 - AluSx SINE Alu -8 304 1 739 271 83 58 chr13 20526173 20526800 -81346369 - L1MEd LINE L1 -4849 1461 758 182 313 60 0 chr13 20527481 20527548 -81345621 + L2 LINE L2 3201 3271 -1 553 324 22 0 chr13 20528166 20528351 -81344818 - MIR SINE MIR -14 248 60 31 96 0 0 chr13 20529432 20529526 -81343643 + AT_rich Low_complexity Low_complexity 1 94 0 21 57 0 0 chr13 20529577 20529612 -81343557 + AT_rich Low_complexity Low_complexity 1 35 0 526 280 36 68 chr13 20529637 20529887 -81343282 - MLT1J LTR MaLR -42 469 228 622 139 47 47 chr13 20529934 20530063 -81343106 - AluJb SINE Alu -2 310 182 966 114 8 0 chr13 20530063 20530195 -81342974 - AluSq/x SINE Alu -180 133 1 548 284 76 20 chr13 20530197 20530394 -81342775 - MLT1J LTR MaLR -296 215 8 1395 104 5 0 chr13 20531172 20531364 -81341805 + AluSg/x SINE Alu 114 306 -3 338 343 19 0 chr13 20531376 20531484 -81341685 + MER5A DNA MER1_type 79 188 -1 432 330 45 49 chr13 20532289 20532577 -81340592 + MLT1K LTR MaLR 166 452 -136 198 0 0 0 chr13 20532656 20532678 -81340491 + (T)n Simple_repeat Simple_repeat 1 22 0 333 0 0 0 chr13 20532695 20532732 -81340437 + (TG)n Simple_repeat Simple_repeat 2 38 0 333 303 67 17 chr13 20532822 20532941 -81340228 + L2 LINE L2 3180 3304 -9 649 315 68 64 chr13 20533816 20534334 -81338835 + MLT1L LTR MaLR 2 521 -94 2219 151 34 63 chr13 20535261 20535739 -81337430 + MLT2C2 LTR ERVL 1 464 0 195 42 0 0 chr13 20535872 20535896 -81337273 + (CA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr13 20537310 20537332 -81335837 + AT_rich Low_complexity Low_complexity 1 22 0 1597 276 3 11 chr13 20537671 20538037 -81335132 + L1PA15 LINE L1 1 363 -6424 5527 258 79 27 chr13 20538214 20541176 -81331993 - L1PA13 LINE L1 -3284 3513 377 * 12032 199 26 9 chr13 20541173 20544821 -81328348 + L1PA15 LINE L1 3109 6812 -4 2451 74 0 0 chr13 20544830 20545141 -81328028 + AluY SINE Alu 1 311 0 1163 175 52 22 chr13 20545748 20546044 -81327125 + MER67C LTR ERV1 1 309 -243 21 0 0 0 chr13 20546074 20546095 -81327074 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 20546447 20546480 -81326689 + (TG)n Simple_repeat Simple_repeat 2 34 0 2223 102 0 0 chr13 20546516 20546799 -81326370 - AluSq SINE Alu -29 284 2 519 191 227 12 chr13 20547083 20547383 -81325786 + LTR37A LTR ERV1 18 417 -9 2220 117 0 0 chr13 20547668 20547966 -81325203 + AluSq SINE Alu 1 298 -15 23 86 0 0 chr13 20548262 20548320 -81324849 + AT_rich Low_complexity Low_complexity 1 58 0 407 316 113 22 chr13 20548495 20548699 -81324470 + L1MC4a LINE L1 5326 5564 -606 2241 98 0 0 chr13 20548699 20549004 -81324165 - AluSq SINE Alu 0 305 1 407 316 113 22 chr13 20549004 20549073 -81324096 + L1MC4a LINE L1 5564 5625 -545 398 229 9 9 chr13 20549220 20549325 -81323844 + L1MC4a LINE L1 5732 5836 -1972 21 0 0 0 chr13 20549611 20549632 -81323537 + AT_rich Low_complexity Low_complexity 1 21 0 199 385 0 0 chr13 20549806 20549889 -81323280 + MIR SINE MIR 22 104 -158 195 269 131 117 chr13 20550038 20550183 -81322986 - L3b LINE CR1 -155 1428 1282 181 253 114 25 chr13 20550213 20550292 -81322877 - L3 LINE CR1 -159 1418 1333 254 263 13 115 chr13 20552391 20552547 -81320622 + MER70-int LTR ERVL 2511 2650 -3004 390 331 39 39 chr13 20552938 20553246 -81319923 + MER70-int LTR ERVL 1796 2103 -2920 1169 202 10 26 chr13 20553510 20553817 -81319352 - L1MA6 LINE L1 -1 6299 5998 1425 252 97 16 chr13 20554386 20554810 -81318359 - L1MC4 LINE L1 -1065 6977 6520 1927 154 99 3 chr13 20554810 20555142 -81318027 + MLT2D LTR ERVL 1 364 -50 291 143 63 16 chr13 20555209 20555272 -81317897 + MLT2D LTR ERVL 455 520 0 450 222 10 0 chr13 20555282 20555381 -81317788 - L1MC4a LINE L1 -1366 6442 6343 3223 242 72 13 chr13 20555409 20557266 -81315903 - L1ME2 LINE L1 -36 6128 4166 735 286 105 18 chr13 20557265 20557768 -81315401 - L1ME2 LINE L1 -2766 3380 2834 * 1515 142 46 0 chr13 20557797 20558079 -81315090 - L1MA8 LINE L1 -10 6281 5987 1132 152 20 0 chr13 20558086 20558290 -81314879 - L1MA8 LINE L1 -447 5853 5646 716 261 93 0 chr13 20558303 20558583 -81314586 - L1ME2 LINE L1 -3327 2819 2514 288 265 174 0 chr13 20559047 20559145 -81314024 + MIR SINE MIR 31 145 -63 281 380 6 25 chr13 20559435 20559593 -81313576 - MIR3 SINE MIR -24 184 30 1261 219 7 14 chr13 20560651 20561095 -81312074 + MLT1D LTR MaLR 5 503 -2 445 302 82 6 chr13 20561107 20561289 -81311880 + LTR16C LTR ERVL 296 491 0 698 244 43 158 chr13 20561735 20562324 -81310845 - L2 LINE L2 -129 3184 2659 208 231 19 0 chr13 20562327 20562379 -81310790 - L2 LINE L2 -1898 1416 1364 652 211 15 25 chr13 20562379 20562578 -81310591 - L2 LINE L2 -2419 895 699 266 238 83 12 chr13 20563094 20563178 -81309991 - MIR SINE MIR -86 176 87 679 237 30 112 chr13 20563220 20563515 -81309654 - Zaphod DNA AcHobo -3759 272 2 746 288 72 79 chr13 20563627 20564182 -81308987 - L2 LINE L2 -622 2692 2142 371 271 19 9 chr13 20564204 20564311 -81308858 + L2 LINE L2 2531 2638 -676 235 293 133 51 chr13 20564305 20564345 -81308824 - L2 LINE L2 -2816 498 463 * 1560 207 25 17 chr13 20564345 20564707 -81308462 - MLT1A1 LTR MaLR 0 365 1 235 293 133 51 chr13 20564707 20564922 -81308247 - L2 LINE L2 -2851 463 222 453 313 13 9 chr13 20565108 20565250 -81307919 - MER5A DNA MER1_type -1 188 32 185 351 27 0 chr13 20565281 20565355 -81307814 - L2 LINE L2 -43 3270 3195 29 0 0 0 chr13 20565411 20565440 -81307729 + AT_rich Low_complexity Low_complexity 1 29 0 540 284 53 62 chr13 20567481 20567706 -81305463 + MIR SINE MIR 28 250 -12 3859 129 20 22 chr13 20568774 20569410 -81303759 + MER41B LTR ERV1 1 635 0 4007 111 12 7 chr13 20569456 20570049 -81303120 + MER4A LTR ERV1 1 596 -4 23 0 0 0 chr13 20570065 20570088 -81303081 + AT_rich Low_complexity Low_complexity 1 23 0 181 365 0 0 chr13 20571115 20571178 -81301991 - L2 LINE L2 0 3313 3251 772 234 121 0 chr13 20571230 20571461 -81301708 - MIR SINE MIR -3 259 1 22 70 0 0 chr13 20571571 20571614 -81301555 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr13 20571888 20571915 -81301254 + AT_rich Low_complexity Low_complexity 1 27 0 2161 122 3 0 chr13 20572499 20572794 -81300375 - AluSg SINE Alu -14 296 1 1784 97 48 87 chr13 20572843 20573152 -81300017 + AluSx SINE Alu 1 297 -15 213 356 55 6 chr13 20573215 20573378 -81299791 - MIR SINE MIR -6 256 86 291 310 49 21 chr13 20573618 20573760 -81299409 - MLT1K LTR MaLR -266 322 177 216 200 0 0 chr13 20573806 20573871 -81299298 + (TG)n Simple_repeat Simple_repeat 1 65 0 2460 61 10 0 chr13 20574562 20574858 -81298311 - AluY SINE Alu -12 299 1 2167 136 0 3 chr13 20575403 20575712 -81297457 - AluSq SINE Alu -5 308 1 1684 272 79 67 chr13 20575833 20576858 -81296311 - L2 LINE L2 -86 3227 2175 194 139 47 0 chr13 20576959 20577002 -81296167 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 271 330 80 0 chr13 20577005 20577093 -81296076 - L2 LINE L2 -5 3267 3173 4161 153 41 21 chr13 20577116 20577758 -81295411 + Tigger1 DNA MER2_type 1 664 -1754 1958 146 10 0 chr13 20577758 20578059 -81295110 - AluJb SINE Alu -8 304 1 4161 153 41 21 chr13 20578059 20578214 -81294955 + Tigger1 DNA MER2_type 664 814 -1604 15988 219 38 17 chr13 20578223 20581626 -81291543 + L1PA15 LINE L1 16 3345 -4258 405 39 0 0 chr13 20581626 20581677 -81291492 + (CA)n Simple_repeat Simple_repeat 2 52 0 15988 219 38 17 chr13 20581677 20585420 -81287749 + L1PA15 LINE L1 3345 7599 -4 8306 134 28 11 chr13 20585432 20586839 -81286330 + Tigger1 DNA MER2_type 802 2231 -187 33 25 0 0 chr13 20586929 20586969 -81286200 + AT_rich Low_complexity Low_complexity 1 40 0 1970 138 47 26 chr13 20586979 20587364 -81285805 - L1MA4 LINE L1 -8 6292 5900 955 151 75 0 chr13 20587366 20587552 -81285617 + Tigger1 DNA MER2_type 2217 2416 -2 21 0 0 0 chr13 20588892 20588913 -81284256 + AT_rich Low_complexity Low_complexity 1 21 0 2015 155 0 3 chr13 20588926 20589223 -81283946 - AluSx SINE Alu -16 296 1 956 189 25 45 chr13 20589957 20590201 -81282968 - MLT1A1 LTR MaLR -126 239 1 2360 98 0 0 chr13 20590820 20591115 -81282054 + AluSg SINE Alu 1 295 -15 2031 67 0 4 chr13 20591855 20592122 -81281047 + L1PA7 LINE L1 5876 6141 -13 709 209 21 38 chr13 20592138 20592377 -81280792 + L1MB8 LINE L1 5927 6161 -17 475 311 66 6 chr13 20594001 20594184 -81278985 + MIR SINE MIR 9 202 -60 911 237 37 12 chr13 20594554 20595009 -81278160 + LTR55 LTR ERV 1 533 -15 1325 175 0 31 chr13 20595019 20595250 -81277919 + L1MA3 LINE L1 6029 6251 -54 2131 123 3 10 chr13 20595250 20595550 -81277619 + AluSx SINE Alu 2 299 -13 1325 175 0 31 chr13 20595550 20595604 -81277565 + L1MA3 LINE L1 6251 6305 0 417 310 222 28 chr13 20595607 20596109 -81277060 - L2 LINE L2 -459 2855 2451 1461 179 68 20 chr13 20596109 20596405 -81276764 + AluJo SINE Alu 1 310 -2 417 310 222 28 chr13 20596405 20596718 -81276451 - L2 LINE L2 -863 2451 1882 261 229 48 24 chr13 20597829 20597912 -81275257 - MIR SINE MIR -66 196 112 933 219 104 1 chr13 20598167 20598525 -81274644 + Charlie4a DNA MER1_type 51 490 -18 2139 93 0 60 chr13 20598530 20598857 -81274312 - AluSq SINE Alu 0 309 1 602 284 91 24 chr13 20599081 20599335 -81273834 + LTR16A LTR ERVL 114 384 -66 661 131 85 26 chr13 20599357 20599510 -81273659 - MER53 DNA DNA -27 162 1 286 169 0 46 chr13 20599510 20599570 -81273599 + LTR16A LTR ERVL 394 450 0 628 217 43 0 chr13 20600025 20600140 -81273029 - FLAM_A SINE Alu -13 120 1 25 31 0 0 chr13 20600883 20600915 -81272254 + AT_rich Low_complexity Low_complexity 1 32 0 267 103 0 0 chr13 20601237 20601276 -81271893 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 176 0 0 chr13 20602349 20602417 -81270752 + CT-rich Low_complexity Low_complexity 5 72 0 262 276 86 112 chr13 20602534 20602766 -81270403 + MIR SINE MIR 10 235 -27 245 264 64 96 chr13 20602921 20603046 -81270123 + MIR SINE MIR 52 172 -90 348 24 0 0 chr13 20603412 20603453 -81269716 + (GA)n Simple_repeat Simple_repeat 2 42 0 546 256 61 17 chr13 20603656 20603836 -81269333 + MIR SINE MIR 1 188 -74 2247 120 73 40 chr13 20603845 20604243 -81268926 + L1MA7 LINE L1 5825 6241 -50 2046 92 28 3 chr13 20604243 20604527 -81268642 + AluSx SINE Alu 1 291 -21 2247 120 73 40 chr13 20604527 20604579 -81268590 + L1MA7 LINE L1 6241 6290 -1 204 217 0 22 chr13 20604598 20604644 -81268525 + MIR SINE MIR 186 230 -32 27 29 0 0 chr13 20604655 20604689 -81268480 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 20605532 20605556 -81267613 + AT_rich Low_complexity Low_complexity 1 24 0 1764 196 70 62 chr13 20605720 20606221 -81266948 - MLT1D LTR MaLR 0 505 1 21630 145 19 35 chr13 20606417 20609130 -81264039 + L1M1 LINE L1 22 2776 -4789 561 26 0 26 chr13 20609130 20609208 -81263961 + L1PA4 LINE L1 6080 6155 0 21630 145 19 35 chr13 20609208 20611011 -81262158 + L1M1 LINE L1 2776 4453 -3112 4054 89 16 0 chr13 20611011 20611580 -81261589 + L1PB1 LINE L1 5571 6151 0 21630 145 19 35 chr13 20611580 20612039 -81261130 + L1M1 LINE L1 4453 4918 -2647 1339 284 266 20 chr13 20612795 20613790 -81259379 - L2 LINE L2 -113 3200 1858 2274 144 5 14 chr13 20613790 20614159 -81259010 - MER47A DNA MER2_type 0 366 1 1339 284 266 20 chr13 20614159 20614346 -81258823 - L2 LINE L2 -1455 1858 1718 186 43 0 0 chr13 20615480 20615503 -81257666 + (CAA)n Simple_repeat Simple_repeat 2 24 0 253 365 153 5 chr13 20615558 20615780 -81257389 - MIR SINE MIR -2 260 6 233 293 27 27 chr13 20616192 20616267 -81256902 + MIR SINE MIR 8 82 -180 1501 202 3 16 chr13 20616680 20616987 -81256182 - AluJb SINE Alu -9 303 1 201 158 0 0 chr13 20617030 20617068 -81256101 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 34 55 0 0 chr13 20617075 20617130 -81256039 + AT_rich Low_complexity Low_complexity 1 55 0 750 293 111 30 chr13 20618233 20618908 -81254261 + L1MCa LINE L1 2193 2927 -3499 327 289 32 16 chr13 20618912 20619102 -81254067 + L1ME4a LINE L1 5759 5951 -219 2212 195 53 29 chr13 20619164 20619748 -81253421 + L1ME1 LINE L1 5549 6146 -20 24 77 0 0 chr13 20619935 20619987 -81253182 + AT_rich Low_complexity Low_complexity 1 52 0 624 245 88 10 chr13 20620872 20620924 -81252245 - MLT2F LTR ERVL -2 661 614 266 87 22 0 chr13 20620924 20620970 -81252199 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 624 245 88 10 chr13 20620970 20621121 -81252048 - MLT2F LTR ERVL -49 614 442 2800 226 57 12 chr13 20621121 20622375 -81250794 + L1MB7 LINE L1 4864 6175 -9 1087 227 74 35 chr13 20622391 20622751 -81250418 - MLT2F LTR ERVL -215 448 4 4571 139 51 93 chr13 20622879 20623028 -81250141 - L1MA9 LINE L1 0 6312 6158 402 138 0 0 chr13 20623028 20623093 -81250076 - AluS SINE Alu -15 294 230 4571 139 51 93 chr13 20623093 20624365 -81248804 - L1MA9 LINE L1 -154 6158 4904 4218 247 154 40 chr13 20624363 20624884 -81248285 - L1MA9 LINE L1 -1457 4689 4229 * 322 118 0 0 chr13 20624884 20624935 -81248234 - Alu SINE Alu 0 300 250 4218 247 154 40 chr13 20624935 20625843 -81247326 - L1MA9 LINE L1 -1917 4229 3015 2135 103 7 7 chr13 20625843 20626135 -81247034 - AluSp SINE Alu -21 292 1 4218 247 154 40 chr13 20626135 20626235 -81246934 - L1MA9 LINE L1 -3131 3015 2928 24 0 0 0 chr13 20626406 20626430 -81246739 + AT_rich Low_complexity Low_complexity 1 24 0 310 210 169 40 chr13 20626451 20626575 -81246594 + L1ME4a LINE L1 5982 6121 0 909 130 0 0 chr13 20627820 20627951 -81245218 - FLAM_C SINE Alu -2 131 1 227 283 0 0 chr13 20628251 20628304 -81244865 + L3 LINE CR1 1524 1576 -1 690 290 108 58 chr13 20628421 20628849 -81244320 - MLT1J LTR MaLR -18 493 45 273 57 0 0 chr13 20628886 20628921 -81244248 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 207 146 0 0 chr13 20628927 20628968 -81244201 + (CA)n Simple_repeat Simple_repeat 2 42 0 337 330 74 11 chr13 20629137 20629313 -81243856 + MIR SINE MIR 62 248 -14 2080 107 3 17 chr13 20629469 20629769 -81243400 + AluSq SINE Alu 1 296 -17 279 265 48 12 chr13 20629780 20629863 -81243306 + MIR SINE MIR 73 158 -104 326 305 144 6 chr13 20629984 20630158 -81243011 - MIR SINE MIR -42 220 23 2614 193 41 7 chr13 20630810 20631350 -81241819 - MER74A LTR ERVL 0 558 1 491 333 56 0 chr13 20631653 20631815 -81241354 + MIR3 SINE MIR 32 202 -6 22 0 0 0 chr13 20632549 20632571 -81240598 + AT_rich Low_complexity Low_complexity 1 22 0 206 254 0 17 chr13 20633363 20633422 -81239747 - MIR3 SINE MIR -48 160 103 282 322 82 67 chr13 20633447 20633838 -81239331 - MLT1K LTR MaLR -190 398 2 336 303 76 8 chr13 20634449 20634568 -81238601 + L2 LINE L2 3186 3312 -1 3264 101 24 0 chr13 20637846 20638311 -81234858 - L1PA13 LINE L1 -6 6157 5682 273 293 39 72 chr13 20638629 20638810 -81234359 - LTR33 LTR ERVL -24 497 323 1955 124 0 0 chr13 20639214 20639487 -81233682 + AluSc SINE Alu 1 273 -36 2057 164 91 30 chr13 20639991 20640429 -81232740 + MLT1C LTR MaLR 3 467 0 2252 62 51 20 chr13 20641890 20642182 -81230987 - AluSp SINE Alu -11 302 2 1874 170 13 0 chr13 20642824 20643130 -81230039 - AluJb SINE Alu 0 312 3 207 0 0 0 chr13 20643631 20643654 -81229515 + (CA)n Simple_repeat Simple_repeat 2 24 0 1540 269 150 19 chr13 20643890 20644810 -81228359 - L1MC4 LINE L1 -51 7991 6951 8275 209 30 18 chr13 20644822 20645679 -81227490 - L1MB2 LINE L1 -8 6163 5318 189 0 0 0 chr13 20645679 20645700 -81227469 + (TTG)n Simple_repeat Simple_repeat 1 21 0 8275 209 30 18 chr13 20645700 20645721 -81227448 - L1MB2 LINE L1 -853 5318 5299 7116 37 0 0 chr13 20645721 20646841 -81226328 - L1PA3 LINE L1 0 6155 5017 8275 209 30 18 chr13 20646841 20647588 -81225581 - L1MB2 LINE L1 -872 5299 4563 2089 186 56 0 chr13 20647588 20647997 -81225172 - MSTB1 LTR MaLR 0 432 1 8275 209 30 18 chr13 20647997 20649297 -81223872 - L1MB2 LINE L1 -1608 4563 3198 230 286 0 0 chr13 20650043 20650099 -81223070 - L2 LINE L2 -493 2821 2766 31 68 0 0 chr13 20650602 20650661 -81222508 + AT_rich Low_complexity Low_complexity 1 59 0 29 47 0 0 chr13 20650891 20650934 -81222235 + AT_rich Low_complexity Low_complexity 1 43 0 992 240 123 10 chr13 20651105 20651413 -81221756 + LTR16B LTR ERVL 116 458 -6 321 270 110 67 chr13 20651772 20652128 -81221041 + L1ME LINE L1 604 974 -5096 22 56 0 0 chr13 20652505 20652541 -81220628 + AT_rich Low_complexity Low_complexity 1 36 0 1174 249 186 40 chr13 20653163 20653717 -81219452 + MLT1E1 LTR MaLR 1 635 -19 1195 213 26 96 chr13 20653718 20654197 -81218972 + MLT2B3 LTR ERVL 1 451 -2 445 290 62 31 chr13 20654203 20654427 -81218742 + L1ME LINE L1 2355 2585 -3495 523 271 103 58 chr13 20654430 20654740 -81218429 - MER46C DNA MER2_type -6 332 9 236 219 0 27 chr13 20654827 20654900 -81218269 + L1ME LINE L1 2719 2789 -3291 297 0 0 0 chr13 20655059 20655092 -81218077 + (CA)n Simple_repeat Simple_repeat 2 34 0 458 283 117 60 chr13 20655149 20655703 -81217466 - L1MDa LINE L1 -5800 740 155 1902 68 0 0 chr13 20655703 20655939 -81217230 - LTR12 LTR ERV1 0 714 479 5496 93 54 4 chr13 20655940 20656723 -81216446 - LTR12 LTR ERV1 -4 822 1 290 309 59 0 chr13 20656723 20656859 -81216310 - L1MDa LINE L1 -6382 158 15 706 145 60 177 chr13 20657182 20657430 -81215739 - MER20 DNA MER1_type 0 219 1 2040 178 71 57 chr13 20658862 20658961 -81214208 - MER67D LTR ERV1 0 514 418 1653 161 0 0 chr13 20658961 20659235 -81213934 + L1PA13 LINE L1 5878 6151 -12 2040 178 71 57 chr13 20659235 20659642 -81213527 - MER67D LTR ERV1 -96 418 1 327 344 78 0 chr13 20659687 20659815 -81213354 - MIR SINE MIR -84 178 41 341 140 0 0 chr13 20661977 20662027 -81211142 - AluS SINE Alu -228 74 25 1787 100 0 0 chr13 20662027 20662258 -81210911 + AluSg/x SINE Alu 80 310 0 24 53 0 0 chr13 20662289 20662327 -81210842 + AT_rich Low_complexity Low_complexity 1 38 0 2045 150 144 0 chr13 20662472 20662846 -81210323 + MSTC LTR MaLR 1 428 0 1644 116 0 0 chr13 20664699 20664924 -81208245 - AluSg/x SINE Alu 0 312 88 347 172 16 0 chr13 20665510 20665574 -81207595 - MLT1J LTR MaLR -40 471 407 622 224 210 23 chr13 20665672 20665886 -81207283 - MLT1J LTR MaLR -234 277 24 2129 112 11 0 chr13 20667736 20668022 -81205147 + AluSg SINE Alu 9 297 -13 2243 107 72 20 chr13 20668683 20669029 -81204140 - THE1B LTR MaLR 0 364 1 216 184 0 0 chr13 20669786 20669824 -81203345 + (CA)n Simple_repeat Simple_repeat 1 38 0 187 316 31 92 chr13 20671060 20671158 -81202011 - MIR SINE MIR -64 144 53 308 348 0 0 chr13 20671460 20671529 -81201640 - L3 LINE CR1 -95 1482 1414 210 37 0 0 chr13 20671546 20671573 -81201596 + (TTTAG)n Simple_repeat Simple_repeat 3 29 0 429 323 79 37 chr13 20671657 20672035 -81201134 + MLT1K LTR MaLR 137 530 -58 337 371 105 34 chr13 20672127 20672715 -81200454 - L3 LINE CR1 -249 1328 699 27 0 0 0 chr13 20672739 20672766 -81200403 + AT_rich Low_complexity Low_complexity 1 27 0 204 67 0 0 chr13 20674628 20674658 -81198511 + (T)n Simple_repeat Simple_repeat 1 30 0 253 180 45 11 chr13 20674913 20675002 -81198167 + (TA)n Simple_repeat Simple_repeat 1 92 0 180 0 0 0 chr13 20676202 20676222 -81196947 + (TG)n Simple_repeat Simple_repeat 2 21 0 314 231 44 44 chr13 20676514 20676605 -81196564 - L2 LINE L2 -1 3312 3222 24 53 0 0 chr13 20676622 20676660 -81196509 + AT_rich Low_complexity Low_complexity 1 38 0 570 274 222 0 chr13 20677392 20677604 -81195565 + MIR SINE MIR 2 260 -2 438 254 25 8 chr13 20678321 20678443 -81194726 - LTR33 LTR ERVL -5 516 393 256 373 25 21 chr13 20678705 20678941 -81194228 - ERVL LTR ERVL -437 5327 5091 1148 286 63 34 chr13 20678997 20679441 -81193728 - ERVL LTR ERVL -1164 4600 4144 848 351 37 11 chr13 20679692 20679966 -81193203 - ERVL LTR ERVL -1975 3789 3501 1967 160 0 0 chr13 20679966 20680278 -81192891 - AluSx SINE Alu 0 312 1 848 351 37 11 chr13 20680278 20680379 -81192790 - ERVL LTR ERVL -2263 3501 3404 925 329 56 32 chr13 20680421 20681083 -81192086 - ERVL LTR ERVL -2382 3272 2595 26 30 0 0 chr13 20681605 20681638 -81191531 + AT_rich Low_complexity Low_complexity 1 33 0 1381 130 4 59 chr13 20681697 20681935 -81191234 + AluSg/x SINE Alu 74 298 -14 1402 155 19 0 chr13 20681998 20682256 -81190913 - L1MA9 LINE L1 0 6312 6050 378 254 11 39 chr13 20682262 20682335 -81190834 - L1M4 LINE L1 -3123 3023 2950 2342 50 7 23 chr13 20682335 20682636 -81190533 - AluY SINE Alu -15 296 1 378 254 11 39 chr13 20682636 20682743 -81190426 - L1M4 LINE L1 -3196 2950 2848 3894 195 35 60 chr13 20682786 20683635 -81189534 - L1MD1 LINE L1 -8 6234 5365 1609 146 27 42 chr13 20683635 20683971 -81189198 - L1MA8 LINE L1 -3 6288 5958 3894 195 35 60 chr13 20683971 20685003 -81188166 - L1MD1 LINE L1 -877 5365 4405 27 0 0 0 chr13 20685884 20685911 -81187258 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 20686135 20686165 -81187004 + AT_rich Low_complexity Low_complexity 1 30 0 6556 69 21 2 chr13 20686233 20687276 -81185893 + L1PA8 LINE L1 5105 6164 -8 290 317 201 0 chr13 20687444 20687608 -81185561 + MIR SINE MIR 8 204 -58 2482 74 0 0 chr13 20688731 20689041 -81184128 + AluY SINE Alu 2 311 0 11209 161 135 16 chr13 20689149 20691701 -81181468 + L1PBa LINE L1 115 2971 -3892 251 174 14 14 chr13 20691701 20691770 -81181399 + (TA)n Simple_repeat Simple_repeat 2 70 0 5954 99 18 9 chr13 20691781 20692892 -81180277 + L1PB1 LINE L1 5022 6150 -1 1339 216 14 0 chr13 20694410 20694693 -81178476 + MER63 DNA MER1_type 776 1062 0 200 322 85 0 chr13 20695068 20695127 -81178042 - L2 LINE L2 -1 3271 3208 354 299 81 88 chr13 20695625 20696070 -81177099 - HAL1b LINE L1 -699 649 208 21 82 0 0 chr13 20696387 20696436 -81176733 + AT_rich Low_complexity Low_complexity 1 49 0 403 313 16 16 chr13 20697045 20697173 -81175996 + MIR SINE MIR 16 143 -119 290 191 34 56 chr13 20698161 20698250 -81174919 - HAL1 LINE L1 -8 2499 2413 880 260 63 29 chr13 20698252 20698567 -81174602 - HAL1 LINE L1 -683 1824 1499 360 373 62 0 chr13 20698571 20698748 -81174421 - HAL1 LINE L1 -2213 294 107 197 264 42 42 chr13 20699104 20699176 -81173993 + L3 LINE CR1 996 1067 -510 27 62 0 0 chr13 20700563 20700611 -81172558 + AT_rich Low_complexity Low_complexity 1 48 0 1800 225 85 140 chr13 20701230 20701412 -81171757 - HsTC2 DNA Tc2 -744 1154 964 2066 125 41 0 chr13 20701412 20701707 -81171462 - AluSg SINE Alu -3 307 1 1800 225 85 140 chr13 20701707 20701968 -81171201 - HsTC2 DNA Tc2 -934 964 690 2181 110 0 0 chr13 20701968 20702258 -81170911 + AluSq SINE Alu 7 296 -17 1800 225 85 140 chr13 20702258 20703033 -81170136 - HsTC2 DNA Tc2 -1208 690 2 699 244 24 21 chr13 20703095 20703308 -81169861 - L1MB8 LINE L1 0 6178 5961 371 183 73 0 chr13 20705565 20705647 -81167522 - L1M4 LINE L1 -1223 4923 4836 340 254 23 39 chr13 20705644 20705774 -81167395 - L1MEc LINE L1 -3679 2536 2409 * 263 222 0 0 chr13 20705809 20705863 -81167306 - L1MEc LINE L1 -3794 2421 2368 1558 304 68 32 chr13 20705969 20706521 -81166648 - L1MEc LINE L1 -4307 2089 1483 2633 98 35 0 chr13 20706521 20706898 -81166271 - L1PA11 LINE L1 -10 6164 5775 1558 304 68 32 chr13 20706898 20707350 -81165819 - L1MEc LINE L1 -4913 1483 1049 503 375 13 15 chr13 20707445 20707840 -81165329 - L1MEc LINE L1 -5501 895 502 1805 159 10 10 chr13 20708154 20708456 -81164713 - AluSx SINE Alu -10 302 1 291 189 41 41 chr13 20709189 20709311 -81163858 + (TTATA)n Simple_repeat Simple_repeat 4 125 0 500 264 61 6 chr13 20710424 20710587 -81162582 - L1ME3A LINE L1 -8 6162 5991 630 207 17 6 chr13 20710889 20711063 -81162106 + CT-rich Low_complexity Low_complexity 2 177 0 309 261 45 9 chr13 20711758 20711869 -81161300 + L1MC4a LINE L1 5811 5925 -1883 896 209 23 6 chr13 20712126 20712298 -81160871 - MER41D LTR ERV1 -1 556 382 21 36 0 0 chr13 20713185 20713213 -81159956 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 20714672 20714701 -81158468 + AT_rich Low_complexity Low_complexity 1 29 0 654 309 58 38 chr13 20714922 20714945 -81158224 + L1MEc LINE L1 1072 1093 -5303 3254 178 25 2 chr13 20714945 20715534 -81157635 + LTR26 LTR ERV1 1 603 0 654 309 58 38 chr13 20715534 20716168 -81157001 + L1MEc LINE L1 1093 1742 -4654 2099 109 0 0 chr13 20716218 20716494 -81156675 + AluSx SINE Alu 22 297 -15 1529 202 108 19 chr13 20716846 20717207 -81155962 + MSTD LTR MaLR 4 396 0 26 30 0 0 chr13 20718186 20718219 -81154950 + AT_rich Low_complexity Low_complexity 1 33 0 2419 62 3 3 chr13 20719175 20719481 -81153688 - AluY SINE Alu -5 306 1 188 61 61 0 chr13 20719575 20719608 -81153561 + T-rich Low_complexity Low_complexity 2 36 0 194 210 0 113 chr13 20719883 20719945 -81153224 + MER5B DNA MER1_type 1 55 -123 186 427 10 0 chr13 20720173 20720269 -81152900 - L2 LINE L2 -190 3082 2986 1044 234 56 59 chr13 20720638 20720976 -81152193 - MLT1A1 LTR MaLR -28 337 1 195 107 0 0 chr13 20720976 20721004 -81152165 - L2 LINE L2 -695 2619 2592 534 341 166 26 chr13 20721201 20721653 -81151516 + L2 LINE L2 1644 2204 -1110 2101 93 0 36 chr13 20721653 20721955 -81151214 - AluY SINE Alu -20 291 1 534 341 166 26 chr13 20721955 20722109 -81151060 + L2 LINE L2 2204 2335 -979 654 222 0 0 chr13 20722112 20722229 -81150940 - MLT1A1 LTR MaLR -219 146 30 1571 177 64 3 chr13 20722543 20722826 -81150343 + AluJb SINE Alu 3 302 -10 185 35 69 0 chr13 20723460 20723489 -81149680 + A-rich Low_complexity Low_complexity 5 35 0 25 0 0 0 chr13 20724558 20724583 -81148586 + AT_rich Low_complexity Low_complexity 1 25 0 2412 62 0 10 chr13 20725842 20726147 -81147022 + AluY SINE Alu 2 303 -8 206 400 33 0 chr13 20726559 20726649 -81146520 + L3b LINE CR1 1442 1534 -49 1643 157 77 7 chr13 20726651 20726938 -81146231 + AluSx SINE Alu 1 307 -5 239 403 28 0 chr13 20727277 20727458 -81145711 - L2 LINE L2 -10 3303 3118 324 367 23 8 chr13 20727946 20728074 -81145095 + MIR3 SINE MIR 46 175 -33 26 0 0 0 chr13 20729604 20729630 -81143539 + AT_rich Low_complexity Low_complexity 1 26 0 2102 114 0 0 chr13 20729982 20730286 -81142883 + AluSg SINE Alu 1 304 0 1506 201 3 23 chr13 20731822 20732121 -81141048 + AluJo SINE Alu 1 293 -19 1986 104 61 14 chr13 20733812 20734109 -81139060 - AluSx SINE Alu -1 311 1 207 0 0 0 chr13 20735063 20735086 -81138083 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 633 209 8 0 chr13 20735646 20735775 -81137394 + FLAM_C SINE Alu 6 135 -8 214 332 68 68 chr13 20739153 20739373 -81133796 - L2 LINE L2 -835 2479 2260 1748 48 0 9 chr13 20739508 20739735 -81133434 - L1PA4 LINE L1 0 6155 5931 21 36 0 0 chr13 20740499 20740527 -81132642 + AT_rich Low_complexity Low_complexity 1 28 0 721 360 76 11 chr13 20741146 20741526 -81131643 + L3 LINE CR1 563 967 -610 253 250 135 0 chr13 20742983 20743079 -81130090 - MIR SINE MIR -56 206 98 1884 110 45 17 chr13 20743093 20743384 -81129785 - AluSx SINE Alu -13 299 1 291 275 119 9 chr13 20744084 20744193 -81128976 - MIR3 SINE MIR -54 154 34 22 0 0 0 chr13 20746254 20746276 -81126893 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 20747755 20747779 -81125390 + AT_rich Low_complexity Low_complexity 1 24 0 1169 239 99 95 chr13 20752278 20752846 -81120323 - MLT1G LTR MaLR 0 590 21 13846 93 1 0 chr13 20752846 20755582 -81117587 + L1PA7 LINE L1 3413 6154 0 397 296 110 25 chr13 20756085 20756549 -81116620 - L1MEc LINE L1 -4460 1965 1368 216 308 26 51 chr13 20756620 20756698 -81116471 - L3 LINE CR1 -1441 136 61 2163 110 0 7 chr13 20757432 20757742 -81115427 - AluSc SINE Alu -1 308 1 225 339 9 18 chr13 20757876 20757985 -81115184 + L2 LINE L2 352 459 -2855 287 117 0 0 chr13 20758022 20758069 -81115100 - Alu SINE Alu -258 44 5 269 271 0 14 chr13 20758331 20758401 -81114768 + MER5B DNA MER1_type 1 69 -109 366 290 24 16 chr13 20759356 20759480 -81113689 + MIR SINE MIR 30 154 -108 490 207 0 0 chr13 20760012 20760094 -81113075 - AluS SINE Alu -230 82 1 1134 279 23 25 chr13 20760806 20761200 -81111969 - LTR52 LTR ERVL -5 416 24 207 0 0 0 chr13 20762010 20762033 -81111136 + (TG)n Simple_repeat Simple_repeat 1 23 0 311 391 75 0 chr13 20762711 20762872 -81110297 + MIR3 SINE MIR 30 202 -6 295 246 177 15 chr13 20763596 20763726 -81109443 + MIR SINE MIR 75 225 -37 2043 144 8 41 chr13 20763850 20764238 -81108931 + THE1C LTR MaLR 1 375 0 322 397 20 0 chr13 20766108 20766254 -81106915 - L2 LINE L2 -5 3308 3160 2795 13 0 0 chr13 20766353 20766664 -81106505 + AluYa5 SINE Alu 1 311 0 2004 140 10 3 chr13 20767124 20767431 -81105738 - AluSg SINE Alu -1 309 1 283 326 20 34 chr13 20767527 20767674 -81105495 + L2 LINE L2 313 457 -2857 2343 170 50 5 chr13 20768160 20768561 -81104608 + MSTC LTR MaLR 10 428 0 2179 118 0 0 chr13 20769771 20770068 -81103101 + AluSc SINE Alu 1 297 -12 1711 108 4 12 chr13 20770635 20770884 -81102285 + AluSx SINE Alu 61 307 -5 1694 160 41 28 chr13 20770933 20771321 -81101848 + L1MB8 LINE L1 5785 6177 -1 1846 175 112 5 chr13 20773245 20773628 -81099541 + MSTB LTR MaLR 1 424 -2 3168 203 37 37 chr13 20773678 20774669 -81098500 + L1MD1 LINE L1 5012 6017 -225 12545 159 47 17 chr13 20774679 20777025 -81096144 + Tigger1 DNA MER2_type 1 2418 0 1057 222 72 17 chr13 20777025 20777130 -81096039 + L1MD2 LINE L1 6029 6127 -232 222 91 0 0 chr13 20777130 20777163 -81096006 + (CA)n Simple_repeat Simple_repeat 2 34 0 1057 222 72 17 chr13 20777163 20777350 -81095819 + L1MD2 LINE L1 6127 6337 -22 190 159 87 101 chr13 20777449 20777518 -81095651 - MIR SINE MIR -66 142 75 267 31 0 0 chr13 20777726 20777758 -81095411 + (A)n Simple_repeat Simple_repeat 1 32 0 26 64 0 0 chr13 20777812 20777859 -81095310 + AT_rich Low_complexity Low_complexity 1 47 0 438 259 144 15 chr13 20779640 20779841 -81093328 + MIR SINE MIR 2 228 -34 24 0 0 0 chr13 20783596 20783620 -81089549 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 20783990 20784011 -81089158 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 20784407 20784453 -81088716 + AT_rich Low_complexity Low_complexity 1 46 0 214 356 167 6 chr13 20785924 20786098 -81087071 + MIR SINE MIR 3 204 -58 2855 184 17 31 chr13 20786587 20786972 -81086197 - L1M3f LINE L1 -4756 572 196 1917 138 27 3 chr13 20786972 20787270 -81085899 - AluSg SINE Alu -2 308 4 2855 184 17 31 chr13 20787270 20787464 -81085705 - L1M3f LINE L1 -5132 196 1 239 227 30 0 chr13 20788079 20788145 -81085024 - MLT1C LTR MaLR -167 300 233 737 174 7 14 chr13 20788197 20788335 -81084834 - MLT1C LTR MaLR -330 137 1 2339 93 0 10 chr13 20788831 20789143 -81084026 + AluY SINE Alu 1 309 -2 213 290 155 45 chr13 20791954 20792109 -81081060 + MIR3 SINE MIR 6 177 -31 2255 83 0 0 chr13 20792351 20792665 -81080504 - AluSc SINE Alu 0 315 2 2546 58 7 0 chr13 20793878 20794186 -81078983 + AluY SINE Alu 1 310 -1 33 43 0 0 chr13 20794619 20794666 -81078503 + AT_rich Low_complexity Low_complexity 1 47 0 314 61 20 0 chr13 20794987 20795036 -81078133 + (TC)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr13 20795038 20795061 -81078108 + (CA)n Simple_repeat Simple_repeat 2 24 0 289 276 61 0 chr13 20795231 20795329 -81077840 - L2 LINE L2 -33 3239 3136 181 175 0 53 chr13 20796853 20796910 -81076259 + CT-rich Low_complexity Low_complexity 2 55 0 241 331 73 29 chr13 20797418 20797554 -81075615 + L2 LINE L2 3172 3313 0 467 67 45 22 chr13 20797670 20797759 -81075410 + GA-rich Low_complexity Low_complexity 2 92 0 472 258 16 39 chr13 20798668 20798796 -81074373 + L2 LINE L2 3189 3313 0 180 0 0 0 chr13 20799640 20799660 -81073509 + (TA)n Simple_repeat Simple_repeat 1 20 0 1344 210 19 0 chr13 20799848 20800119 -81073050 + MER58B DNA MER1_type 66 341 0 197 359 60 26 chr13 20803259 20803376 -81069793 - L2 LINE L2 -204 3068 2948 2091 187 44 19 chr13 20803484 20803895 -81069274 + MSTB1 LTR MaLR 12 432 0 679 353 56 49 chr13 20804145 20804979 -81068190 - L2 LINE L2 -797 2517 1678 194 314 35 23 chr13 20805043 20805129 -81068040 - MIR SINE MIR 0 262 176 2130 116 3 3 chr13 20806411 20806705 -81066464 + AluSx SINE Alu 1 294 -18 198 313 0 0 chr13 20809314 20809362 -81063807 + L2 LINE L2 3251 3298 -15 207 0 0 0 chr13 20809693 20809716 -81063453 + (A)n Simple_repeat Simple_repeat 1 23 0 305 216 159 13 chr13 20810117 20810284 -81062885 + LTR40c LTR ERVL 198 384 -78 26 30 0 0 chr13 20810511 20810544 -81062625 + AT_rich Low_complexity Low_complexity 1 33 0 617 279 161 50 chr13 20810619 20811171 -81061998 + L2 LINE L2 2065 2689 -625 2082 118 0 3 chr13 20811171 20811460 -81061709 - AluSx SINE Alu -24 288 1 617 279 161 50 chr13 20811460 20811502 -81061667 + L2 LINE L2 2689 2725 -589 243 267 70 23 chr13 20811758 20811844 -81061325 - L2 LINE L2 -2 3270 3181 25 31 0 0 chr13 20812585 20812617 -81060552 + AT_rich Low_complexity Low_complexity 1 32 0 29 47 0 0 chr13 20813012 20813055 -81060114 + AT_rich Low_complexity Low_complexity 1 43 0 1254 211 77 52 chr13 20813486 20813851 -81059318 + MLT1A2 LTR MaLR 1 374 0 201 378 109 29 chr13 20814434 20814746 -81058423 + L2 LINE L2 2926 3262 -10 259 343 38 59 chr13 20814963 20815081 -81058088 - MIR SINE MIR -64 144 40 203 171 0 24 chr13 20815155 20815196 -81057973 + GA-rich Low_complexity Low_complexity 4 43 0 561 252 77 13 chr13 20815215 20815370 -81057799 - MIR SINE MIR -43 219 55 448 315 33 5 chr13 20816011 20816195 -81056974 + MER5A DNA MER1_type 1 189 0 2811 52 0 0 chr13 20816580 20816929 -81056240 - L1PA5 LINE L1 -2 6152 5804 196 337 12 12 chr13 20818072 20818158 -81055011 - MIR3 SINE MIR -9 199 114 21 71 0 0 chr13 20818618 20818660 -81054509 + AT_rich Low_complexity Low_complexity 1 42 0 310 292 91 32 chr13 20818814 20819033 -81054136 + L1MCc LINE L1 24 255 -6168 361 295 36 30 chr13 20819044 20819210 -81053959 + L1MCc LINE L1 303 469 -5954 225 154 0 0 chr13 20821369 20821408 -81051761 + CT-rich Low_complexity Low_complexity 4 42 0 23 0 0 0 chr13 20823834 20823857 -81049312 + AT_rich Low_complexity Low_complexity 1 23 0 312 218 0 0 chr13 20823916 20824003 -81049166 + CT-rich Low_complexity Low_complexity 3 89 0 198 398 21 0 chr13 20824524 20824617 -81048552 - MIR3 SINE MIR 0 208 114 2365 118 39 14 chr13 20824761 20825116 -81048053 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr13 20825169 20825210 -81047959 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr13 20825697 20825727 -81047442 + AT_rich Low_complexity Low_complexity 1 30 0 353 297 30 0 chr13 20826438 20826539 -81046630 + MER5A DNA MER1_type 9 112 -77 645 225 87 6 chr13 20826799 20826948 -81046221 - MER5A DNA MER1_type -2 187 21 1998 94 0 4 chr13 20826948 20827213 -81045956 - AluY SINE Alu -19 292 29 645 225 87 6 chr13 20827213 20827236 -81045933 - MER5A DNA MER1_type -168 21 1 763 309 40 16 chr13 20827789 20828038 -81045131 + MIR SINE MIR 6 260 -2 277 310 20 0 chr13 20828045 20828145 -81045024 + (CATATA)n Simple_repeat Simple_repeat 5 106 0 365 249 116 26 chr13 20828179 20828368 -81044801 + Charlie7 DNA MER1_type 400 605 -2007 1404 244 30 30 chr13 20830670 20831137 -81042032 - MLT1C LTR MaLR 0 467 1 2518 226 33 68 chr13 20832247 20833166 -81040003 + L1ME1 LINE L1 5279 6161 -5 1384 117 216 9 chr13 20833185 20833416 -81039753 + AluSg1 SINE Alu 1 279 -30 243 0 0 0 chr13 20833423 20833450 -81039719 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3916 158 22 7 chr13 20833627 20834366 -81038803 + L1MA8 LINE L1 5542 6291 0 2316 35 0 7 chr13 20835258 20835544 -81037625 - L1PA4 LINE L1 -1 6154 5871 315 244 9 61 chr13 20837409 20837524 -81035645 - L1MC4 LINE L1 -1320 6722 6614 1174 208 6 45 chr13 20840542 20840879 -81032290 - MER33 DNA MER1_type 0 324 1 297 294 14 82 chr13 20841792 20841938 -81031231 - MIR3 SINE MIR -11 197 62 332 117 0 17 chr13 20842812 20842872 -81030297 + (TTCC)n Simple_repeat Simple_repeat 3 61 0 182 37 37 0 chr13 20842866 20842893 -81030276 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 * 1882 152 26 0 chr13 20842905 20843207 -81029962 - AluSx SINE Alu -2 310 1 2006 136 26 0 chr13 20843459 20843761 -81029408 - AluSx SINE Alu -2 310 1 473 329 80 13 chr13 20843788 20844013 -81029156 + L2 LINE L2 2652 2891 -423 434 285 75 25 chr13 20844134 20844334 -81028835 + L2 LINE L2 3104 3313 0 259 294 76 0 chr13 20844773 20844865 -81028304 + MIR SINE MIR 132 230 -32 1051 196 14 10 chr13 20846828 20847150 -81026019 + MLT1B LTR MaLR 1 390 0 2174 250 82 44 chr13 20847152 20848542 -81024627 + L1ME LINE L1 42 1460 -4620 957 172 0 0 chr13 20848546 20848697 -81024472 + AluJb SINE Alu 147 297 -15 506 280 50 15 chr13 20848697 20848897 -81024272 + L1ME LINE L1 1497 1703 -4558 380 294 78 38 chr13 20849068 20849464 -81023705 + L1MDa LINE L1 1914 2322 -4218 340 136 168 101 chr13 20849472 20849590 -81023579 + MLT1E2 LTR MaLR 1 197 -457 822 242 44 16 chr13 20849648 20849987 -81023182 + MLT1D LTR MaLR 125 502 -3 33 0 0 0 chr13 20850982 20851015 -81022154 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr13 20851409 20851435 -81021734 + AT_rich Low_complexity Low_complexity 1 26 0 708 178 0 39 chr13 20851513 20851642 -81021527 - FLAM_C SINE Alu -16 127 4 366 331 50 7 chr13 20851801 20851940 -81021229 - MIR SINE MIR -115 147 3 387 277 72 63 chr13 20853135 20853261 -81019908 + L1MC4a LINE L1 5432 5555 -566 1700 166 20 20 chr13 20853261 20853563 -81019606 - AluJo SINE Alu -10 302 1 387 277 72 63 chr13 20853563 20853888 -81019281 + L1MC4a LINE L1 5555 5790 -331 5993 201 94 36 chr13 20854621 20855634 -81017535 + L1MB3 LINE L1 862 1814 -4568 2028 105 0 18 chr13 20855634 20855919 -81017250 + AluSg SINE Alu 11 290 -20 5993 201 94 36 chr13 20855919 20857551 -81015618 + L1MB3 LINE L1 1814 3667 -2715 3752 215 32 15 chr13 20857551 20859718 -81013451 + L1MB3 LINE L1 4024 6418 -1 186 43 0 0 chr13 20860293 20860316 -81012853 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr13 20860752 20860796 -81012373 + AT_rich Low_complexity Low_complexity 1 44 0 397 311 49 37 chr13 20861757 20861921 -81011248 - L2 LINE L2 -3 3269 3104 2547 202 55 10 chr13 20862080 20862676 -81010493 + L1 LINE L1 4043 4669 -1477 216 0 0 0 chr13 20862676 20862700 -81010469 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2547 202 55 10 chr13 20862700 20862721 -81010448 + L1 LINE L1 4669 4688 -1458 1452 211 0 0 chr13 20862721 20862986 -81010183 + AluJo SINE Alu 22 286 -26 349 236 21 14 chr13 20862993 20863094 -81010075 - MLT1H1 LTR MaLR -424 131 45 282 311 121 15 chr13 20863128 20863260 -81009909 - L2 LINE L2 -823 2491 2346 573 306 83 32 chr13 20863435 20863713 -81009456 - L2 LINE L2 -19 3294 3003 251 428 59 11 chr13 20863792 20863979 -81009190 + L2 LINE L2 2895 3090 -182 745 99 0 0 chr13 20864273 20864384 -81008785 + L1MA5A LINE L1 6179 6289 -8 29 0 0 0 chr13 20865523 20865552 -81007617 + AT_rich Low_complexity Low_complexity 1 29 0 1832 165 0 13 chr13 20866437 20866740 -81006429 - AluJb SINE Alu -13 299 1 284 68 0 23 chr13 20866929 20866973 -81006196 + (TAA)n Simple_repeat Simple_repeat 2 44 0 223 238 0 32 chr13 20866996 20867059 -81006110 - MIR SINE MIR -31 231 171 27 49 0 0 chr13 20867160 20867201 -81005968 + AT_rich Low_complexity Low_complexity 1 41 0 1477 193 0 7 chr13 20867201 20867475 -81005694 - AluJb SINE Alu -32 280 9 21 0 0 0 chr13 20867494 20867515 -81005654 + AT_rich Low_complexity Low_complexity 1 21 0 497 255 33 71 chr13 20868183 20868367 -81004802 - MER5B DNA MER1_type -1 177 1 254 224 17 0 chr13 20868612 20868670 -81004499 + MER81 DNA DNA 24 82 -32 2184 117 0 0 chr13 20869212 20869511 -81003658 - AluSg SINE Alu -11 299 1 309 344 61 28 chr13 20871518 20871730 -81001439 + MIR SINE MIR 2 220 -42 199 326 153 68 chr13 20872101 20872395 -81000774 - L2 LINE L2 -5 3267 2949 526 111 0 0 chr13 20872832 20872904 -81000265 + FLAM SINE Alu 54 125 -18 287 259 155 17 chr13 20873250 20873366 -80999803 + L2 LINE L2 3173 3304 -9 21 0 0 0 chr13 20873418 20873439 -80999730 + AT_rich Low_complexity Low_complexity 1 21 0 779 250 0 27 chr13 20874899 20875083 -80998086 + MER8 DNA MER2_type 1 179 -60 387 194 0 0 chr13 20875059 20875121 -80998048 + MER2 DNA MER2_type 283 344 -1 * 234 91 0 0 chr13 20875124 20875157 -80998012 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 278 0 0 chr13 20875157 20875247 -80997922 - L1MC4 LINE L1 -1339 6703 6614 263 333 76 56 chr13 20875268 20875412 -80997757 - MIR SINE MIR -111 151 5 40 0 0 0 chr13 20876033 20876073 -80997096 + AT_rich Low_complexity Low_complexity 1 40 0 2244 90 0 10 chr13 20877789 20878089 -80995080 - AluY SINE Alu -14 297 1 304 256 128 39 chr13 20878301 20878457 -80994712 + MIR SINE MIR 18 187 -75 856 232 6 0 chr13 20879055 20879223 -80993946 - FAM SINE Alu -6 169 1 21 82 0 0 chr13 20879390 20879439 -80993730 + AT_rich Low_complexity Low_complexity 1 49 0 232 326 22 11 chr13 20880667 20880756 -80992413 - L2 LINE L2 -240 3032 2943 2534 208 35 2 chr13 20880963 20881502 -80991667 - L1MD3 LINE L1 -10 7985 7429 393 250 35 17 chr13 20881507 20881623 -80991546 - MLT1F1 LTR MaLR -447 120 3 1753 310 50 73 chr13 20881625 20882388 -80990781 - L1MD3 LINE L1 -717 7307 6560 365 360 139 35 chr13 20882420 20882795 -80990374 - L2 LINE L2 0 3272 2859 640 308 66 9 chr13 20883062 20883289 -80989880 - MIR SINE MIR 0 262 23 911 339 27 25 chr13 20887348 20887749 -80985420 + LTR16A LTR ERVL 16 417 -33 2227 298 29 22 chr13 20890161 20890761 -80982408 + L1MEc LINE L1 78 687 -5709 1864 135 6 49 chr13 20890761 20891086 -80982083 + AluSx SINE Alu 1 311 -1 2227 298 29 22 chr13 20891086 20891342 -80981827 + L1MEc LINE L1 687 940 -5456 773 269 77 67 chr13 20891353 20891948 -80981221 + L1MEc LINE L1 1038 1638 -4758 5690 254 59 21 chr13 20891954 20894108 -80979061 + L1M4 LINE L1 2795 5031 -1115 5854 207 40 7 chr13 20894108 20896623 -80976546 + L1PA7 LINE L1 2087 4517 -1637 207 0 0 0 chr13 20896623 20896646 -80976523 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5854 207 40 7 chr13 20896646 20897271 -80975898 + L1PA7 LINE L1 4517 5120 -1034 5854 66 3 0 chr13 20897271 20898002 -80975167 + L1PA7 LINE L1 5411 6152 -2 5854 207 40 7 chr13 20898002 20898031 -80975138 + L1PA7 LINE L1 5120 6152 -2 5488 125 14 0 chr13 20898043 20898883 -80974286 + L1PA13 LINE L1 5312 6163 0 * 10747 201 22 1 chr13 20898874 20900233 -80972936 + L1P4 LINE L1 3025 4448 -1713 378 0 0 0 chr13 20900233 20900275 -80972894 + (CA)n Simple_repeat Simple_repeat 1 42 0 10747 201 22 1 chr13 20900275 20901317 -80971852 + L1P4 LINE L1 4448 5467 -694 2188 80 13 40 chr13 20901317 20901691 -80971478 - L1PA3 LINE L1 0 6155 5792 384 210 145 16 chr13 20902098 20902222 -80970947 + MIR SINE MIR 86 225 -37 203 125 25 0 chr13 20902239 20902279 -80970890 + (TTG)n Simple_repeat Simple_repeat 2 42 0 241 245 0 0 chr13 20902533 20902586 -80970583 + MIR SINE MIR 71 123 -139 242 109 0 43 chr13 20903132 20903178 -80969991 - L1MB7 LINE L1 -9 6175 6132 21 36 0 0 chr13 20903365 20903393 -80969776 + AT_rich Low_complexity Low_complexity 1 28 0 643 352 39 21 chr13 20903854 20904189 -80968980 - L3 LINE CR1 -9 1568 1228 1325 68 11 0 chr13 20905012 20905188 -80967981 + L1PA4 LINE L1 5978 6155 0 181 292 46 15 chr13 20905558 20905623 -80967546 + L2 LINE L2 2583 2649 -665 336 48 0 0 chr13 20905709 20905751 -80967418 + (CA)n Simple_repeat Simple_repeat 1 42 0 547 329 114 30 chr13 20906343 20906953 -80966216 + L2 LINE L2 2633 3298 -15 2272 101 0 13 chr13 20907055 20907362 -80965807 - AluSg SINE Alu -7 303 1 24 32 0 0 chr13 20907467 20907498 -80965671 + AT_rich Low_complexity Low_complexity 1 31 0 787 303 50 3 chr13 20907605 20907905 -80965264 - MER110 LTR ERV1 -12 479 166 334 300 56 50 chr13 20908171 20908351 -80964818 - L1MEd LINE L1 -4878 1241 1061 330 382 36 18 chr13 20909278 20909503 -80963666 - L2 LINE L2 -492 2822 2594 511 210 17 0 chr13 20909528 20909647 -80963522 + MER3 DNA MER1_type 85 205 -4 22 35 0 0 chr13 20911576 20911605 -80961564 + AT_rich Low_complexity Low_complexity 1 29 0 396 0 0 0 chr13 20912138 20912182 -80960987 + (TG)n Simple_repeat Simple_repeat 2 45 0 34 55 0 0 chr13 20912215 20912270 -80960899 + AT_rich Low_complexity Low_complexity 1 55 0 29 47 0 0 chr13 20912741 20912784 -80960385 + AT_rich Low_complexity Low_complexity 1 43 0 27 62 0 0 chr13 20913704 20913752 -80959417 + AT_rich Low_complexity Low_complexity 1 48 0 892 115 0 8 chr13 20914463 20914582 -80958587 + AluJb SINE Alu 1 120 -192 266 0 29 0 chr13 20914582 20914616 -80958553 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr13 20915448 20915469 -80957700 + (TA)n Simple_repeat Simple_repeat 1 21 0 267 308 93 19 chr13 20915752 20915859 -80957310 + L2 LINE L2 3154 3268 -4 228 67 0 0 chr13 20916119 20916149 -80957020 + (TC)n Simple_repeat Simple_repeat 1 30 0 590 308 37 7 chr13 20916536 20916661 -80956508 + L1ME3A LINE L1 3609 3729 -2417 1791 49 9 0 chr13 20916661 20916886 -80956283 + L1PA7 LINE L1 5920 6146 -8 590 308 37 7 chr13 20916886 20917085 -80956084 + L1ME3A LINE L1 3729 3952 -2194 969 279 75 18 chr13 20917259 20917711 -80955458 + L1ME3A LINE L1 5692 6169 -1 14872 24 6 0 chr13 20917910 20920433 -80952736 + L1PA3 LINE L1 3618 6147 -8 34 0 0 0 chr13 20920643 20920677 -80952492 + AT_rich Low_complexity Low_complexity 1 34 0 228 111 0 0 chr13 20921310 20921346 -80951823 + (T)n Simple_repeat Simple_repeat 1 36 0 727 247 44 6 chr13 20926778 20926960 -80946209 - MER5A DNA MER1_type 0 189 1 253 261 15 15 chr13 20927250 20927315 -80945854 - MIR3 SINE MIR -18 190 126 551 296 19 51 chr13 20927445 20927661 -80945508 - MIR SINE MIR 0 262 54 277 251 104 67 chr13 20927936 20928107 -80945062 + MIR SINE MIR 20 189 -73 2224 124 96 15 chr13 20928299 20928695 -80944474 + MSTA LTR MaLR 1 428 0 815 92 77 15 chr13 20930340 20930470 -80942699 + L1PA11 LINE L1 6037 6174 0 25 31 0 0 chr13 20930624 20930656 -80942513 + AT_rich Low_complexity Low_complexity 1 32 0 1068 165 30 0 chr13 20931172 20931372 -80941797 + L1PA13 LINE L1 5958 6163 0 332 259 28 19 chr13 20932126 20932234 -80940935 - MIR SINE MIR -26 236 128 222 208 0 0 chr13 20933326 20933379 -80939790 + (TA)n Simple_repeat Simple_repeat 2 54 0 224 294 0 0 chr13 20934102 20934153 -80939016 + L2 LINE L2 3214 3264 -8 235 310 10 50 chr13 20934354 20934454 -80938715 - L3 LINE CR1 -2 1575 1480 237 308 9 28 chr13 20935559 20935666 -80937503 - MIR SINE MIR -113 149 45 21 36 0 0 chr13 20935744 20935772 -80937397 + AT_rich Low_complexity Low_complexity 1 28 0 252 209 0 0 chr13 20935841 20935884 -80937285 + MIR SINE MIR 49 91 -171 26 0 0 0 chr13 20936670 20936696 -80936473 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr13 20937597 20937625 -80935544 + AT_rich Low_complexity Low_complexity 1 28 0 309 89 0 0 chr13 20938091 20938136 -80935033 + (TG)n Simple_repeat Simple_repeat 2 46 0 216 111 0 0 chr13 20939414 20939450 -80933719 + (TA)n Simple_repeat Simple_repeat 2 37 0 414 261 83 85 chr13 20941889 20942394 -80930775 + L1M4 LINE L1 3839 4342 -1804 35 71 0 0 chr13 20942433 20942503 -80930666 + AT_rich Low_complexity Low_complexity 1 70 0 1488 300 167 24 chr13 20942719 20943480 -80929689 + L2 LINE L2 611 1480 -1834 325 330 25 0 chr13 20943486 20943604 -80929565 + L2 LINE L2 2018 2138 -1176 1400 98 0 5 chr13 20943696 20943899 -80929270 - HUERS-P3b LTR ERV1 -2443 4975 4774 5155 22 0 0 chr13 20943911 20944507 -80928662 - L1PA3 LINE L1 -3 6152 5557 915 19 0 0 chr13 20944507 20944613 -80928556 + L1PA3 LINE L1 5476 5581 -574 564 283 130 26 chr13 20945391 20945621 -80927548 + MIR SINE MIR 6 259 -3 1272 119 73 36 chr13 20945966 20946185 -80926984 + MER30 DNA MER1_type 4 230 0 236 280 144 41 chr13 20946985 20947256 -80925913 - L1MC/D LINE L1 -2211 5597 5299 286 332 112 6 chr13 20948142 20948358 -80924811 - L1MC/D LINE L1 -1894 4252 4015 342 366 52 6 chr13 20948609 20948781 -80924388 - L1M4 LINE L1 -1982 4164 3985 26 30 0 0 chr13 20949604 20949637 -80923532 + AT_rich Low_complexity Low_complexity 1 33 0 1054 231 106 30 chr13 20949768 20950239 -80922930 + Charlie4a DNA MER1_type 2 508 0 2153 123 0 7 chr13 20950350 20950660 -80922509 + AluSx SINE Alu 1 308 -4 222 118 0 0 chr13 20950895 20950929 -80922240 + (TCCA)n Simple_repeat Simple_repeat 4 37 0 259 313 0 12 chr13 20950963 20951043 -80922126 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 30 45 0 0 chr13 20951070 20951114 -80922055 + AT_rich Low_complexity Low_complexity 1 44 0 1306 146 150 33 chr13 20951487 20951761 -80921408 + AluJo SINE Alu 5 310 -2 596 227 64 7 chr13 20951761 20951902 -80921267 + AluJb SINE Alu 134 282 -30 416 102 0 0 chr13 20952157 20952216 -80920953 + MADE1 DNA Mariner 22 80 0 549 88 0 0 chr13 20953562 20953642 -80919527 + (TC)n Simple_repeat Simple_repeat 1 80 0 285 29 0 0 chr13 20954174 20954208 -80918961 + (TG)n Simple_repeat Simple_repeat 1 34 0 258 267 0 0 chr13 20954264 20954324 -80918845 + L2 LINE L2 3212 3271 -1 189 0 0 0 chr13 20955088 20955109 -80918060 + (TA)n Simple_repeat Simple_repeat 1 21 0 267 308 93 19 chr13 20955392 20955499 -80917670 + L2 LINE L2 3154 3268 -4 228 67 0 0 chr13 20955759 20955789 -80917380 + (TC)n Simple_repeat Simple_repeat 1 30 0 495 128 202 0 chr13 20956163 20956257 -80916912 + AluSp/q SINE Alu 192 304 -9 289 339 28 9 chr13 20957379 20957488 -80915681 - L2 LINE L2 -15 3298 3188 1065 168 173 0 chr13 20957592 20957818 -80915351 + MSTA LTR MaLR 1 265 -163 8814 153 30 11 chr13 20957828 20959258 -80913911 + L1MA2 LINE L1 3566 5074 -1230 1655 182 17 13 chr13 20959258 20959560 -80913609 + AluJb SINE Alu 1 303 -9 8814 153 30 11 chr13 20959560 20960815 -80912354 + L1MA2 LINE L1 5074 6304 0 201 333 0 0 chr13 20960828 20960888 -80912281 + MIR SINE MIR 203 262 0 192 325 55 12 chr13 20961267 20961365 -80911804 + MIR SINE MIR 57 162 -46 197 333 89 33 chr13 20961514 20961604 -80911565 + MIR SINE MIR 53 147 -115 223 188 0 47 chr13 20961717 20961781 -80911388 + T-rich Low_complexity Low_complexity 1 61 0 30 83 0 0 chr13 20961787 20961859 -80911310 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr13 20962218 20962242 -80910927 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr13 20963291 20963319 -80909850 + AT_rich Low_complexity Low_complexity 1 28 0 2122 130 3 0 chr13 20963344 20963643 -80909526 - AluSx SINE Alu -10 302 3 311 268 25 19 chr13 20963680 20963837 -80909332 + L1M4 LINE L1 2860 3017 -3129 254 298 125 15 chr13 20963870 20964199 -80908970 + L1M4 LINE L1 3159 3523 -2623 1904 220 5 23 chr13 20964202 20964598 -80908571 + L1MA4A LINE L1 2 390 -6459 * 12939 205 38 35 chr13 20964597 20967310 -80905859 + L1MA4A LINE L1 2038 4743 -2262 2371 46 0 3 chr13 20967310 20967637 -80905532 - AluY SINE Alu 0 328 3 12939 205 38 35 chr13 20967637 20967922 -80905247 + L1MA4A LINE L1 4743 5026 -1979 1414 101 0 10 chr13 20967922 20968129 -80905040 + L1PA13 LINE L1 5958 6162 -1 12939 205 38 35 chr13 20968129 20970067 -80903102 + L1MA4A LINE L1 5026 7000 -5 5886 213 48 45 chr13 20970101 20970251 -80902918 + L1MA8 LINE L1 3508 3656 -2635 1356 164 13 0 chr13 20970251 20970483 -80902686 + MER46A DNA MER2_type 2 236 0 5886 213 48 45 chr13 20970483 20973106 -80900063 + L1MA8 LINE L1 3656 6287 -4 973 188 0 0 chr13 20973118 20973278 -80899891 + AluJb SINE Alu 130 289 -23 452 205 43 43 chr13 20973299 20973460 -80899709 + L1M4 LINE L1 5188 5348 -798 22 0 0 0 chr13 20973516 20973538 -80899631 + AT_rich Low_complexity Low_complexity 1 22 0 978 226 67 15 chr13 20973567 20973908 -80899261 + L1ME LINE L1 4963 5321 -825 220 297 13 26 chr13 20974612 20974767 -80898402 + T-rich Low_complexity Low_complexity 3 155 0 31 0 0 0 chr13 20975261 20975292 -80897877 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr13 20975867 20975919 -80897250 + AT_rich Low_complexity Low_complexity 1 52 0 1863 122 0 21 chr13 20976097 20976376 -80896793 - AluSx SINE Alu -16 296 24 1328 273 71 64 chr13 20978094 20979093 -80894076 + L1ME3A LINE L1 4269 5291 -873 1676 155 9 31 chr13 20979093 20979410 -80893759 - AluJo SINE Alu -2 310 1 1328 273 71 64 chr13 20979410 20979589 -80893580 + L1ME3A LINE L1 5291 5467 -697 920 234 216 48 chr13 20979639 20980249 -80892920 + L1ME3A LINE L1 5456 6168 -2 2560 152 4 6 chr13 20980347 20980822 -80892347 + L1P LINE L1 3021 3494 -2652 4022 105 12 25 chr13 20980822 20981458 -80891711 + L1PA10 LINE L1 5534 6163 -5 2352 48 20 0 chr13 20981709 20981881 -80891288 - AluY SINE Alu -10 301 119 225 0 0 0 chr13 20981881 20981906 -80891263 + (TA)n Simple_repeat Simple_repeat 1 25 0 2352 48 20 0 chr13 20981906 20982028 -80891141 - AluY SINE Alu -192 119 1 245 377 58 34 chr13 20982472 20982679 -80890490 - L2 LINE L2 -554 2760 2549 200 182 0 0 chr13 20982993 20983026 -80890143 + GA-rich Low_complexity Low_complexity 2 34 0 1627 149 27 0 chr13 20984302 20984598 -80888571 + L1MA4 LINE L1 5992 6295 -5 463 301 129 31 chr13 20984600 20985084 -80888085 + L1ME LINE L1 5327 5868 -302 2429 74 0 0 chr13 20985186 20985497 -80887672 + L1PA7 LINE L1 5821 6131 -23 7169 139 32 23 chr13 20985531 20986816 -80886353 - HSMAR2 DNA Mariner -4 1298 2 1410 224 62 40 chr13 20987870 20988325 -80884844 + MER101 LTR ERV1 10 474 0 213 302 47 23 chr13 20988431 20988517 -80884652 - L3 LINE CR1 -3 1574 1487 324 0 0 0 chr13 20988932 20988968 -80884201 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 288 0 0 0 chr13 20989559 20989591 -80883578 + (TG)n Simple_repeat Simple_repeat 2 33 0 2760 22 0 0 chr13 20990269 20990584 -80882585 + AluYb8 SINE Alu 1 315 -3 21 36 0 0 chr13 20993886 20993914 -80879255 + AT_rich Low_complexity Low_complexity 1 28 0 5765 181 5 8 chr13 20994439 20996107 -80877062 + L1MA6 LINE L1 4635 6298 -2 1841 224 94 22 chr13 20996864 20997363 -80875806 + MLT2B3 LTR ERVL 1 535 -19 305 47 23 0 chr13 20997363 20997406 -80875763 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 351 44 0 0 chr13 20997411 20997456 -80875713 + (TG)n Simple_repeat Simple_repeat 2 46 0 1920 124 0 46 chr13 20997503 20997810 -80875359 + AluSg SINE Alu 1 293 -17 2305 95 0 3 chr13 20998137 20998442 -80874727 + AluY SINE Alu 1 304 -7 267 320 50 20 chr13 20998870 20999070 -80874099 + L1ME LINE L1 5615 5820 -301 304 293 171 0 chr13 20999383 20999506 -80873663 + L3 LINE CR1 1041 1184 -393 640 303 29 0 chr13 20999639 20999814 -80873355 + LTR16A LTR ERVL 16 195 -255 3168 149 10 14 chr13 20999923 21000418 -80872751 - MER1A DNA MER1_type 0 529 37 209 277 0 0 chr13 21000935 21000982 -80872187 + L3 LINE CR1 844 890 -687 476 252 0 84 chr13 21001022 21001165 -80872004 + MLT1A1 LTR MaLR 3 133 -521 481 275 5 9 chr13 21001233 21001418 -80871751 - MLT1E1 LTR MaLR -211 415 284 611 99 0 9 chr13 21001438 21001549 -80871620 + (TTCC)n Simple_repeat Simple_repeat 1 110 0 310 222 14 0 chr13 21001681 21001753 -80871416 - L1MD3 LINE L1 -19 7976 7904 239 247 26 13 chr13 21001949 21002026 -80871143 - L1MC3 LINE L1 -1799 5986 5909 1805 162 139 18 chr13 21002026 21002408 -80870761 + MSTA LTR MaLR 1 428 0 549 222 71 10 chr13 21002420 21002618 -80870551 - L1MC3 LINE L1 -768 5474 5265 * 646 236 25 105 chr13 21002604 21002918 -80870251 + L1M4 LINE L1 3383 3671 -2475 559 224 43 50 chr13 21002952 21003113 -80870056 + MLT1A1 LTR MaLR 206 365 0 357 262 65 62 chr13 21003157 21003282 -80869887 - L1ME LINE L1 -5254 1276 1153 1446 157 125 20 chr13 21003282 21003587 -80869582 - MER44D DNA MER2_type -1 608 2 357 262 65 62 chr13 21003587 21003736 -80869433 - L1ME LINE L1 -5377 1153 1001 1619 240 37 21 chr13 21003783 21004166 -80869003 + MSTD LTR MaLR 6 394 -2 307 249 99 99 chr13 21004616 21004817 -80868352 - L1ME LINE L1 -6159 562 362 635 311 21 13 chr13 21005354 21005589 -80867580 - MIR SINE MIR -6 256 20 1926 153 0 0 chr13 21006842 21007145 -80866024 - AluSq SINE Alu 0 305 3 250 240 184 9 chr13 21007152 21007369 -80865800 - L1ME LINE L1 -3960 2580 2326 355 250 196 33 chr13 21007396 21007580 -80865589 - L1ME LINE L1 -4763 1777 1564 515 75 124 31 chr13 21007779 21007940 -80865229 + CT-rich Low_complexity Low_complexity 3 178 0 876 186 62 0 chr13 21007968 21008129 -80865040 - FAM SINE Alu -2 173 3 777 305 24 71 chr13 21008174 21008712 -80864457 - L1ME LINE L1 -5235 1295 783 312 328 38 57 chr13 21008971 21009233 -80863936 - L1ME LINE L1 -6204 336 80 263 243 27 0 chr13 21009469 21009543 -80863626 + (TA)n Simple_repeat Simple_repeat 2 77 0 2998 176 26 11 chr13 21009580 21010149 -80863020 - L1PA16 LINE L1 -9 6157 5580 26 64 0 0 chr13 21010304 21010351 -80862818 + AT_rich Low_complexity Low_complexity 1 47 0 684 255 99 108 chr13 21011257 21011712 -80861457 - MLT1J LTR MaLR -60 451 1 180 77 0 0 chr13 21011738 21011764 -80861405 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 613 130 0 116 chr13 21012260 21012406 -80860763 + LTR7 LTR ERV1 3 131 -319 18931 88 18 31 chr13 21012417 21015325 -80857844 + HERVH LTR ERV1 125 2995 -4718 5990 82 15 2 chr13 21015304 21016147 -80857022 + HERVH LTR ERV1 3140 3993 -3720 * 4422 136 0 1 chr13 21016150 21016812 -80856357 + HERVH LTR ERV1 4489 5149 -2564 1337 130 28 9 chr13 21016813 21017029 -80856140 + HERVH LTR ERV1 5600 5819 -1894 * 2405 95 48 13 chr13 21017027 21017406 -80855763 + HERVH LTR ERV1 7322 7713 0 2634 70 119 5 chr13 21017406 21017808 -80855361 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr13 21018001 21018022 -80855147 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 21018424 21018445 -80854724 + AT_rich Low_complexity Low_complexity 1 21 0 6043 172 111 76 chr13 21018495 21019045 -80854124 + L1MC3 LINE L1 6051 6580 -1205 1705 194 69 75 chr13 21019045 21019362 -80853807 + MLT1D LTR MaLR 1 315 -190 651 78 0 0 chr13 21019362 21019452 -80853717 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 1705 194 69 75 chr13 21019452 21019639 -80853530 + MLT1D LTR MaLR 315 502 -3 6043 172 111 76 chr13 21019639 21020112 -80853057 + L1MC3 LINE L1 6580 7035 -750 266 243 87 29 chr13 21020112 21020215 -80852954 + MLT1F1 LTR MaLR 35 143 -424 6043 172 111 76 chr13 21020215 21020739 -80852430 + L1MC3 LINE L1 7035 7759 -26 1006 90 0 14 chr13 21020739 21020883 -80852286 + L1PA8 LINE L1 6022 6163 -9 206 316 38 68 chr13 21021441 21021574 -80851595 + MER5A DNA MER1_type 35 163 -26 260 207 17 17 chr13 21022529 21022587 -80850582 - MIR3 SINE MIR -23 185 128 415 241 200 0 chr13 21022797 21022942 -80850227 + MLT2E LTR ERVL 19 192 -436 394 292 91 76 chr13 21023578 21023961 -80849208 + MLT1J1 LTR MaLR 51 439 -7 838 288 4 18 chr13 21024147 21024373 -80848796 + MER58A DNA MER1_type 2 224 0 4529 148 27 33 chr13 21024558 21025428 -80847741 + L1MA7 LINE L1 5065 5935 -356 2474 56 7 0 chr13 21025428 21025732 -80847437 - AluY SINE Alu -5 306 1 4529 148 27 33 chr13 21025732 21025882 -80847287 + L1MA7 LINE L1 5935 6084 -207 2380 256 83 39 chr13 21026113 21027088 -80846081 + L1MC4 LINE L1 6621 7638 -404 * 3034 288 80 30 chr13 21027058 21027699 -80845470 + L1MEc LINE L1 5 612 -5784 276 30 0 0 chr13 21027699 21027732 -80845437 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3034 288 80 30 chr13 21027732 21028742 -80844427 + L1MEc LINE L1 612 1739 -4657 307 330 132 35 chr13 21028857 21029260 -80843909 - L1M4 LINE L1 -1115 5031 4590 1267 257 36 70 chr13 21029594 21030181 -80842988 - L1ME3A LINE L1 -9 6161 5595 313 300 140 33 chr13 21030935 21031085 -80842084 - MIR SINE MIR -6 256 91 2236 119 3 0 chr13 21032027 21032338 -80840831 - AluSx SINE Alu 0 312 1 487 308 96 8 chr13 21032495 21032735 -80840434 + MIR SINE MIR 2 262 0 1882 100 100 6 chr13 21033637 21033680 -80839489 - L1PA10 LINE L1 0 6172 6134 378 0 0 0 chr13 21033680 21033722 -80839447 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 1882 100 100 6 chr13 21033722 21034009 -80839160 - L1PA10 LINE L1 -38 6134 5826 9545 111 12 16 chr13 21034047 21036039 -80837130 + L1P4 LINE L1 3835 5807 -361 223 343 128 0 chr13 21036665 21036767 -80836402 + L2 LINE L2 3199 3313 0 252 170 0 0 chr13 21038050 21038103 -80835066 + T-rich Low_complexity Low_complexity 3 55 0 1890 113 60 0 chr13 21038199 21038491 -80834678 + AluSx SINE Alu 1 308 0 322 308 0 0 chr13 21038614 21038718 -80834451 - LTR16A LTR ERVL -21 429 326 621 341 148 6 chr13 21038915 21039267 -80833902 + L2 LINE L2 2514 2915 -399 2937 31 0 45 chr13 21039647 21040028 -80833141 + L1PA4 LINE L1 5791 6154 -1 21 0 0 0 chr13 21041289 21041310 -80831859 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 21041767 21041794 -80831375 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 683 204 0 40 chr13 21041796 21041948 -80831221 - AluJb SINE Alu -30 282 137 191 341 114 8 chr13 21042260 21042383 -80830786 + MIR3 SINE MIR 13 148 -60 278 287 180 0 chr13 21044385 21044467 -80828702 + MARNA DNA Mariner 166 232 -354 272 70 23 0 chr13 21044467 21044510 -80828659 + (CA)n Simple_repeat Simple_repeat 2 45 0 278 287 180 0 chr13 21044510 21044594 -80828575 + MARNA DNA Mariner 232 362 -224 336 102 0 0 chr13 21044693 21044742 -80828427 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 250 374 33 0 chr13 21045017 21045108 -80828061 - L2 LINE L2 -240 3073 2980 499 164 55 0 chr13 21046370 21046480 -80826689 - L1MA5 LINE L1 -10 6290 6175 212 0 36 0 chr13 21047415 21047443 -80825726 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1041 164 29 17 chr13 21047871 21048109 -80825060 - L1MA4 LINE L1 -19 6281 6041 183 356 62 14 chr13 21049362 21049508 -80823661 - L2 LINE L2 0 3313 3161 1905 157 7 0 chr13 21050683 21050976 -80822193 - AluSx SINE Alu -14 298 4 199 236 36 18 chr13 21051540 21051595 -80821574 + L3 LINE CR1 818 873 -704 441 265 20 57 chr13 21053316 21053476 -80819693 + LTR1B LTR ERV1 1 151 -634 1627 67 18 0 chr13 21054142 21054365 -80818804 + L1PA7 LINE L1 5920 6146 -8 590 288 6 0 chr13 21054387 21054564 -80818605 + L1ME3A LINE L1 3775 3952 -2194 983 285 71 16 chr13 21054738 21055191 -80817978 + L1ME3A LINE L1 5692 6169 -1 382 265 73 25 chr13 21055182 21055386 -80817783 + L1MC4 LINE L1 6993 7206 -836 * 26 50 0 0 chr13 21055678 21055718 -80817451 + AT_rich Low_complexity Low_complexity 1 40 0 1596 163 62 43 chr13 21055719 21056087 -80817082 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr13 21056275 21056296 -80816873 + AT_rich Low_complexity Low_complexity 1 21 0 259 130 0 43 chr13 21056340 21056386 -80816783 - THE1C LTR MaLR -331 44 1 25 31 0 0 chr13 21056565 21056597 -80816572 + AT_rich Low_complexity Low_complexity 1 32 0 1565 242 12 6 chr13 21056806 21057145 -80816024 + Tigger7 DNA MER2_type 1 341 -2146 456 284 28 32 chr13 21058538 21058788 -80814381 - L1 LINE L1 -3039 3107 2859 1484 197 149 101 chr13 21058807 21059491 -80813678 + LTR28 LTR ERV1 304 1020 0 399 316 23 63 chr13 21059802 21059976 -80813193 - MIR3 SINE MIR -27 181 15 428 245 104 33 chr13 21061469 21061681 -80811488 + HAL1 LINE L1 1091 1317 -1190 574 203 30 15 chr13 21061697 21061830 -80811339 + L1PB4 LINE L1 6022 6156 0 231 207 11 23 chr13 21062154 21062241 -80810928 + GA-rich Low_complexity Low_complexity 2 87 0 580 207 155 72 chr13 21063091 21063284 -80809885 - MER20 DNA MER1_type -3 216 8 217 224 12 12 chr13 21064700 21064785 -80808384 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 1268 201 10 7 chr13 21064849 21065148 -80808021 - L1MA4 LINE L1 -1 6299 6000 317 278 122 41 chr13 21065149 21065394 -80807775 + L1ME LINE L1 5538 5802 -319 204 40 0 0 chr13 21065397 21065422 -80807747 + (TG)n Simple_repeat Simple_repeat 1 25 0 509 285 140 42 chr13 21067140 21067333 -80805836 - MIR SINE MIR -47 215 4 596 346 178 5 chr13 21070827 21071255 -80801914 - L2 LINE L2 -1365 1949 1448 3339 122 26 66 chr13 21071396 21071871 -80801298 + L1MA4A LINE L1 5662 6104 -199 1976 123 10 3 chr13 21071871 21072164 -80801005 + AluSx SINE Alu 1 295 -17 3339 122 26 66 chr13 21072164 21072352 -80800817 + L1MA4A LINE L1 6104 6298 -5 192 241 0 37 chr13 21072679 21072733 -80800436 - MIR SINE MIR -2 260 209 180 0 0 0 chr13 21072735 21072755 -80800414 + (TA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr13 21072756 21072778 -80800391 + (TG)n Simple_repeat Simple_repeat 2 23 0 227 83 28 0 chr13 21072778 21072814 -80800355 + L1MA4A LINE L1 6250 6286 -17 229 302 31 31 chr13 21072832 21072914 -80800255 - MIR SINE MIR -57 205 121 1966 142 20 0 chr13 21072914 21073216 -80799953 + AluSx SINE Alu 1 308 -4 229 302 31 31 chr13 21073216 21073229 -80799940 - MIR SINE MIR -140 122 110 2064 139 38 12 chr13 21073241 21073586 -80799583 + L1PB4 LINE L1 5772 6125 -31 277 299 155 6 chr13 21073790 21073964 -80799205 - MLT1I LTR MaLR -209 200 1 3597 76 52 2 chr13 21074559 21075043 -80798126 - MER41A LTR ERV1 -46 508 1 370 123 0 0 chr13 21076446 21076511 -80796658 - L1MD2 LINE L1 -3 6356 6292 3468 266 69 64 chr13 21076531 21078529 -80794640 + L1M4b LINE L1 21 2007 -4950 3570 136 20 2 chr13 21078529 21079081 -80794088 + MER61E LTR ERV1 4 565 -4 3468 266 69 64 chr13 21079081 21079485 -80793684 + L1M4b LINE L1 2007 2407 -4550 1675 164 48 0 chr13 21079485 21079754 -80793415 + AluSx SINE Alu 6 287 -25 3468 266 69 64 chr13 21079754 21080742 -80792427 + L1M4b LINE L1 2407 3441 -3516 1438 245 34 5 chr13 21080743 21081159 -80792010 + L1M4b LINE L1 4183 4610 -2347 1097 185 80 15 chr13 21081159 21081419 -80791750 - L1MDa LINE L1 -3890 2650 2461 203 0 37 0 chr13 21081419 21081446 -80791723 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1097 185 80 15 chr13 21081446 21081564 -80791605 - L1MDa LINE L1 -4079 2461 2352 1098 186 44 22 chr13 21081574 21081848 -80791321 - L1MDa LINE L1 -4358 2182 1903 2291 238 95 11 chr13 21081964 21082585 -80790584 - L1MDa LINE L1 -5804 736 64 319 350 91 54 chr13 21082931 21083282 -80789887 + L2 LINE L2 2922 3285 -28 260 242 5 172 chr13 21083322 21083508 -80789661 - L2 LINE L2 -50 3263 3109 1541 163 29 97 chr13 21083539 21083920 -80789249 - MLT1A1 LTR MaLR -7 358 4 21 36 0 0 chr13 21084263 21084291 -80788878 + AT_rich Low_complexity Low_complexity 1 28 0 2342 193 56 6 chr13 21085372 21085853 -80787316 - MLT1D LTR MaLR 0 505 1 396 0 0 0 chr13 21086110 21086154 -80787015 + (TG)n Simple_repeat Simple_repeat 1 44 0 520 335 140 31 chr13 21088070 21088521 -80784648 + L2 LINE L2 2810 3309 -4 2225 95 0 0 chr13 21089360 21089677 -80783492 - AluSp SINE Alu 0 317 1 546 215 69 73 chr13 21090566 21090826 -80782343 - L1MDa LINE L1 -4871 1669 1411 2007 157 0 3 chr13 21090827 21091140 -80782029 - AluSx SINE Alu 0 312 1 10053 61 1 0 chr13 21091197 21093259 -80779910 - L1PA6 LINE L1 0 6154 4097 1856 74 12 0 chr13 21093640 21093898 -80779271 - L1PA6 LINE L1 -2033 4113 3853 1589 262 45 21 chr13 21093896 21094362 -80778807 - L1MDa LINE L1 -6041 499 23 * 1073 186 89 0 chr13 21094371 21094619 -80778550 + Tigger6 DNA MER2_type 1326 1595 -2 423 319 38 4 chr13 21095509 21095680 -80777489 - MIR SINE MIR -64 198 24 370 266 53 0 chr13 21095721 21095815 -80777354 - MIR SINE MIR -163 99 1 862 154 0 27 chr13 21095974 21096143 -80777026 + AluSg/x SINE Alu 136 300 0 21 0 0 0 chr13 21096884 21096905 -80776264 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 21097081 21097121 -80776048 + AT_rich Low_complexity Low_complexity 1 40 0 1573 163 69 14 chr13 21097221 21097510 -80775659 - MLT1A1 LTR MaLR -2 363 59 452 336 111 29 chr13 21097787 21098266 -80774903 - L1 LINE L1 -1654 4492 3975 2525 183 7 4 chr13 21098388 21098848 -80774321 + MLT1C LTR MaLR 3 463 -4 22 0 0 0 chr13 21099160 21099182 -80773987 + AT_rich Low_complexity Low_complexity 1 22 0 452 299 63 111 chr13 21099341 21099612 -80773557 + MIR SINE MIR 5 262 0 367 322 0 0 chr13 21100621 21100736 -80772433 - MER103 DNA DNA -51 115 1 974 196 54 10 chr13 21101036 21101240 -80771929 + AluJb SINE Alu 91 303 -9 457 281 179 5 chr13 21101428 21101624 -80771545 + MIR SINE MIR 33 262 0 312 339 89 32 chr13 21101758 21101882 -80771287 - L2 LINE L2 -20 3252 3122 301 292 56 84 chr13 21104805 21104983 -80768186 - MER5B DNA MER1_type -4 174 2 182 311 59 34 chr13 21105059 21105178 -80767991 + MIR SINE MIR 67 188 -74 2558 115 3 6 chr13 21105445 21105810 -80767359 - THE1B LTR MaLR 0 364 1 215 281 62 0 chr13 21105911 21105975 -80767194 + MIR SINE MIR 66 133 -129 180 405 16 8 chr13 21107649 21107770 -80765399 - MIR SINE MIR -113 149 28 276 30 0 0 chr13 21110661 21110694 -80762475 + (TG)n Simple_repeat Simple_repeat 2 34 0 757 169 23 0 chr13 21112699 21112829 -80760340 + MSTD LTR MaLR 1 133 -263 564 222 49 0 chr13 21112843 21112992 -80760177 + MLT1A1 LTR MaLR 244 364 -1 1544 208 3 10 chr13 21113143 21113455 -80759714 + AluJo SINE Alu 3 312 0 21 57 0 0 chr13 21113911 21113946 -80759223 + AT_rich Low_complexity Low_complexity 1 35 0 363 0 0 0 chr13 21114074 21114118 -80759051 + L1PA6 LINE L1 6108 6151 -3 21 0 0 0 chr13 21114118 21114139 -80759030 + AT_rich Low_complexity Low_complexity 1 21 0 958 231 42 49 chr13 21114531 21114817 -80758352 - MER65B LTR ERV1 -18 513 230 444 346 5 16 chr13 21115661 21115849 -80757320 - MIR SINE MIR -52 210 25 657 277 44 39 chr13 21116373 21116579 -80756590 - MIR SINE MIR -54 208 2 4497 54 0 0 chr13 21117411 21117969 -80755200 - LTR6B LTR ERV1 0 558 1 359 238 12 0 chr13 21118078 21118158 -80755011 - MIR SINE MIR -10 252 172 649 272 10 26 chr13 21118544 21118739 -80754430 - MIR SINE MIR 0 262 71 909 280 96 23 chr13 21118740 21119136 -80754033 + L2 LINE L2 2319 2743 -571 646 296 18 93 chr13 21119119 21119291 -80753878 + L2 LINE L2 2952 3080 -233 * 2329 72 7 3 chr13 21119291 21119595 -80753574 - AluY SINE Alu -6 305 1 646 296 18 93 chr13 21119595 21119810 -80753359 + L2 LINE L2 3080 3310 -3 248 321 12 0 chr13 21120378 21120462 -80752707 + L1ME LINE L1 5598 5682 -439 23 68 0 0 chr13 21127639 21127683 -80745486 + AT_rich Low_complexity Low_complexity 1 44 0 260 266 25 0 chr13 21130370 21130449 -80742720 + (TA)n Simple_repeat Simple_repeat 1 81 0 2057 130 32 13 chr13 21130686 21131002 -80742167 - MER7A DNA MER2_type -26 320 1 189 107 0 0 chr13 21131017 21131045 -80742124 + (CA)n Simple_repeat Simple_repeat 2 29 0 320 250 0 13 chr13 21131046 21131122 -80742047 - L2 LINE L2 -12 3260 3186 195 42 0 0 chr13 21131315 21131339 -80741830 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 50 0 0 chr13 21134016 21134056 -80739113 + AT_rich Low_complexity Low_complexity 1 40 0 475 305 65 29 chr13 21134126 21134572 -80738597 - L1MEc LINE L1 -4672 2153 1692 17686 173 53 27 chr13 21134786 21138899 -80734270 - L1MA2 LINE L1 0 7723 3238 634 156 0 0 chr13 21138899 21138989 -80734180 + 5S rRNA rRNA 2 91 -30 17686 173 53 27 chr13 21138989 21142299 -80730870 - L1MA2 LINE L1 -4485 3238 14 233 230 0 11 chr13 21142301 21142388 -80730781 - L1MEc LINE L1 -5174 1368 1283 23 33 0 0 chr13 21143117 21143147 -80730022 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr13 21144173 21144195 -80728974 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 410 203 24 11 chr13 21144530 21144651 -80728518 - L1MD2 LINE L1 -320 5858 5746 571 184 31 12 chr13 21145559 21145722 -80727447 - L1MA7 LINE L1 -2 6289 6124 472 167 13 0 chr13 21145722 21145800 -80727369 - Tigger5 DNA MER2_type 0 2323 2245 298 200 0 0 chr13 21145807 21145857 -80727312 - Tigger5 DNA MER2_type -2273 50 1 1092 140 17 146 chr13 21145860 21146192 -80726977 - L1MA7 LINE L1 -150 6034 5813 538 158 0 0 chr13 21146227 21146322 -80726847 - L1MA6 LINE L1 -24 6276 6182 * 3706 279 52 37 chr13 21146318 21148237 -80724932 - L1 LINE L1 -3150 3200 1310 198 0 0 0 chr13 21148237 21148259 -80724910 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3706 279 52 37 chr13 21148259 21149280 -80723889 - L1 LINE L1 -5040 1310 540 2299 117 0 0 chr13 21149280 21149588 -80723581 + AluSp SINE Alu 6 313 0 3706 279 52 37 chr13 21149588 21150135 -80723034 - L1 LINE L1 -5810 540 2 357 82 0 0 chr13 21150139 21150188 -80722981 + (TG)n Simple_repeat Simple_repeat 2 50 0 559 289 94 25 chr13 21150572 21150807 -80722362 - MIR SINE MIR -10 252 2 1506 212 59 15 chr13 21151057 21151397 -80721772 + MLT1A1 LTR MaLR 3 357 -8 267 103 0 0 chr13 21151487 21151526 -80721643 + (T)n Simple_repeat Simple_repeat 1 39 0 2132 128 0 0 chr13 21151584 21151882 -80721287 - AluSx SINE Alu -14 298 1 1676 226 60 20 chr13 21151937 21152474 -80720695 - L1MC/D LINE L1 -556 5686 5121 25 0 0 0 chr13 21152777 21152802 -80720367 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr13 21153202 21153245 -80719924 + AT_rich Low_complexity Low_complexity 1 43 0 247 263 26 0 chr13 21153246 21153322 -80719847 + MER116 DNA Mariner 3 80 0 425 332 101 14 chr13 21154092 21154309 -80718860 + MIR SINE MIR 15 250 -12 199 333 89 0 chr13 21154766 21154856 -80718313 - MIR SINE MIR -9 253 156 350 265 103 8 chr13 21154856 21154973 -80718196 + MIR SINE MIR 19 146 -116 602 252 15 0 chr13 21155496 21155627 -80717542 - MER5A DNA MER1_type -56 133 1 2060 144 51 25 chr13 21155696 21156051 -80717118 - THE1B LTR MaLR 0 364 1 11181 105 19 0 chr13 21156053 21157602 -80715567 - THE1B-int LTR MaLR -2 1578 1 2259 113 51 25 chr13 21157602 21157957 -80715212 - THE1B LTR MaLR 0 364 1 195 42 0 0 chr13 21158756 21158780 -80714389 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr13 21158802 21158829 -80714340 + AT_rich Low_complexity Low_complexity 1 27 0 1965 120 0 37 chr13 21158831 21159131 -80714038 + AluSx SINE Alu 1 289 -23 656 248 41 52 chr13 21161006 21161305 -80711864 - L1MEc LINE L1 -3956 2440 2139 186 71 0 0 chr13 21161305 21161333 -80711836 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1856 113 47 14 chr13 21161333 21161603 -80711566 - AluSx SINE Alu -33 279 1 656 248 41 52 chr13 21161603 21161650 -80711519 - L1MEc LINE L1 -4255 2141 2102 5085 163 17 14 chr13 21161689 21162670 -80710499 - L1MA7 LINE L1 -10 6281 5298 914 142 59 34 chr13 21162681 21162885 -80710284 + L1MA7 LINE L1 5075 5283 -863 576 233 18 111 chr13 21162924 21163131 -80710038 - L1MEc LINE L1 -4354 2042 1888 2059 125 3 14 chr13 21163131 21163428 -80709741 - AluSq SINE Alu -18 295 2 576 233 18 111 chr13 21163428 21163615 -80709554 - L1MEc LINE L1 -4508 1888 1685 4044 188 27 46 chr13 21163693 21164862 -80708307 - L1MB7 LINE L1 -19 6165 5016 4226 138 29 0 chr13 21164868 21165551 -80707618 - L1PA15 LINE L1 -3 6162 5460 27369 46 38 3 chr13 21165553 21169050 -80704119 + L1P LINE L1 1 3622 -2524 8626 44 4 0 chr13 21170195 21171265 -80701904 + L1PA4 LINE L1 1449 2522 -3624 8046 30 7 3 chr13 21171245 21172806 -80700363 + L1PA4 LINE L1 4394 5956 -199 * 5856 261 146 37 chr13 21172906 21175497 -80697672 + L1PA15 LINE L1 98 2969 -4612 11768 213 14 11 chr13 21175597 21178427 -80694742 + L1PA15 LINE L1 3812 6646 -957 2127 144 131 11 chr13 21178427 21178809 -80694360 + MSTA LTR MaLR 1 428 0 11768 213 14 11 chr13 21178809 21179763 -80693406 + L1PA15 LINE L1 6646 7595 -8 41 0 0 0 chr13 21179868 21179909 -80693260 + AT_rich Low_complexity Low_complexity 1 41 0 461 181 28 28 chr13 21179909 21180135 -80693034 + (TAA)n Simple_repeat Simple_repeat 1 226 0 601 300 98 18 chr13 21180150 21180660 -80692509 + L1MEc LINE L1 1089 1639 -4757 2555 169 77 8 chr13 21180981 21181513 -80691656 - L1MA5 LINE L1 -2 6298 5730 731 172 8 0 chr13 21182154 21182276 -80690893 + MER20 DNA MER1_type 93 215 -4 2197 123 0 0 chr13 21183859 21184161 -80689008 - AluY SINE Alu -9 302 1 190 226 36 107 chr13 21184726 21184810 -80688359 + MIR SINE MIR 46 123 -139 750 268 56 9 chr13 21185582 21185795 -80687374 + MIR SINE MIR 25 247 -15 508 281 27 36 chr13 21187639 21187860 -80685309 + L1MC4 LINE L1 6474 6692 -1350 2685 232 54 7 chr13 21187863 21188476 -80684693 + MER82 DNA MER2_type 6 647 -6 596 218 115 13 chr13 21188481 21188637 -80684532 + L1MC4 LINE L1 6673 6844 -1198 1616 91 0 5 chr13 21188641 21188849 -80684320 - AluSx SINE Alu -105 207 1 558 317 38 6 chr13 21189988 21190171 -80682998 + MIR SINE MIR 40 228 -34 262 275 58 0 chr13 21190625 21190745 -80682424 - L1MA5 LINE L1 -738 5426 5300 218 204 0 0 chr13 21190914 21190958 -80682211 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 650 308 90 54 chr13 21190969 21191706 -80681463 - L1M4 LINE L1 -892 5254 4454 1489 186 43 14 chr13 21191706 21191986 -80681183 + AluJb SINE Alu 2 289 -23 650 308 90 54 chr13 21191986 21192480 -80680689 - L1M4 LINE L1 -1692 4454 3979 335 293 90 18 chr13 21192598 21192765 -80680404 - L1MEc LINE L1 -4084 2741 2563 43534 42 5 3 chr13 21193216 21199411 -80673758 + L1PA3 LINE L1 1 6204 0 1990 145 3 0 chr13 21199472 21199768 -80673401 + AluSq SINE Alu 1 297 -16 234 326 46 34 chr13 21199857 21200032 -80673137 - L1MEc LINE L1 -4850 1692 1516 2511 220 22 22 chr13 21200299 21200854 -80672315 + MER74A LTR ERVL 4 558 0 21 0 0 0 chr13 21202527 21202548 -80670621 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 110 9 chr13 21203142 21203251 -80669918 - LTR16C LTR ERVL -8 483 364 288 117 43 5 chr13 21203287 21203349 -80669820 + AluY SINE Alu 1 44 -258 1913 105 19 0 chr13 21203474 21203741 -80669428 - AluSp SINE Alu -1 312 41 1934 290 80 23 chr13 21203746 21204480 -80668689 + L1MC/D LINE L1 95 870 -5670 1293 234 33 19 chr13 21204522 21204829 -80668340 + L1MA1 LINE L1 163 473 -7092 * 11088 162 72 61 chr13 21204818 21210660 -80662509 + L1MA1 LINE L1 1707 7618 -103 3967 220 81 21 chr13 21210671 21211811 -80661358 + L1MC/D LINE L1 1084 2323 -4217 351 0 0 0 chr13 21211811 21211850 -80661319 + (CA)n Simple_repeat Simple_repeat 2 40 0 3967 220 81 21 chr13 21211850 21212093 -80661076 + L1MC/D LINE L1 2323 2550 -3990 1062 218 91 40 chr13 21212100 21212729 -80660440 + L1MC/D LINE L1 4841 5437 -1199 2149 70 0 4 chr13 21212729 21213001 -80660168 + AluY SINE Alu 41 311 0 1062 218 91 40 chr13 21213001 21213125 -80660044 + L1MC/D LINE L1 5437 5553 -1083 2103 117 79 18 chr13 21213125 21213468 -80659701 - THE1B LTR MaLR 0 364 1 1062 218 91 40 chr13 21213468 21213540 -80659629 + L1MC/D LINE L1 5553 5970 -666 4529 184 88 159 chr13 21213540 21215429 -80657740 + MER52A LTR ERV1 1 1755 0 614 124 0 0 chr13 21215429 21215526 -80657643 + L1 LINE L1 4735 4831 -1315 30 27 0 0 chr13 21215978 21216015 -80657154 + AT_rich Low_complexity Low_complexity 1 37 0 7517 144 46 25 chr13 21216137 21217022 -80656147 - MER57-int LTR ERV1 -1042 6495 5630 333 0 0 0 chr13 21217022 21217059 -80656110 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 366 23 0 0 chr13 21217058 21217101 -80656068 + (CA)n Simple_repeat Simple_repeat 2 44 0 7517 144 46 25 chr13 21217059 21218299 -80654870 - MER57-int LTR ERV1 -1907 5630 4299 11151 28 6 0 chr13 21218556 21220651 -80652518 + L1PA3 LINE L1 4056 6155 0 236 234 16 16 chr13 21220742 21220870 -80652299 + (TA)n Simple_repeat Simple_repeat 1 128 0 458 337 46 83 chr13 21221048 21221481 -80651688 - HAL1 LINE L1 -933 1574 1158 2183 142 108 5 chr13 21221497 21221885 -80651284 - MSTA LTR MaLR 0 428 1 336 333 22 11 chr13 21222189 21222372 -80650797 - L1MEd LINE L1 -5923 196 12 308 218 79 79 chr13 21223148 21223249 -80649920 + MER58 DNA MER1_type 1 101 -114 381 43 0 0 chr13 21223291 21223338 -80649831 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2343 148 32 25 chr13 21223347 21223778 -80649391 + Tigger2a DNA MER2_type 1 434 0 256 116 0 23 chr13 21223817 21223860 -80649309 + MER58 DNA MER1_type 2379 2420 0 307 283 93 4 chr13 21224299 21224536 -80648633 - HAL1 LINE L1 -2 2505 2248 231 147 0 0 chr13 21224542 21224576 -80648593 + U2 snRNA snRNA 1 34 -154 429 70 0 0 chr13 21224677 21224734 -80648435 + (TG)n Simple_repeat Simple_repeat 2 58 0 1224 162 20 0 chr13 21224743 21224947 -80648222 + MER2 DNA MER2_type 4 211 -134 1155 299 90 68 chr13 21225081 21226060 -80647109 - HAL1 LINE L1 -419 2088 1132 1494 207 14 7 chr13 21226060 21226350 -80646819 - AluJo SINE Alu -16 296 5 1155 299 90 68 chr13 21226350 21226362 -80646807 - HAL1 LINE L1 -1375 1132 1122 2690 89 35 15 chr13 21226362 21226757 -80646412 - L1PA10 LINE L1 -1 6167 5765 1155 299 90 68 chr13 21226757 21227391 -80645778 - HAL1 LINE L1 -1385 1122 427 377 365 38 0 chr13 21228809 21229020 -80644149 - MLT1J2 LTR MaLR -211 239 21 23 33 0 0 chr13 21229529 21229559 -80643610 + AT_rich Low_complexity Low_complexity 1 30 0 1259 205 60 55 chr13 21229720 21230105 -80643064 + MLT1C LTR MaLR 81 467 0 277 266 123 34 chr13 21230182 21230475 -80642694 + L1ME3A LINE L1 3197 3515 -2631 9038 206 39 12 chr13 21230583 21231605 -80641564 - L1PA15 LINE L1 0 6165 5172 195 69 0 0 chr13 21231605 21231634 -80641535 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 9038 206 39 12 chr13 21231634 21232167 -80641002 - L1PA15 LINE L1 -993 5172 4655 2133 67 14 25 chr13 21232167 21232450 -80640719 + AluY SINE Alu 21 300 -11 9038 206 39 12 chr13 21232450 21232462 -80640707 - L1PA15 LINE L1 -1510 4655 4645 2624 87 8 19 chr13 21232462 21232830 -80640339 + THE1B LTR MaLR 1 364 0 9038 206 39 12 chr13 21232830 21234397 -80638772 - L1PA15 LINE L1 -1520 4645 2975 921 241 68 6 chr13 21234629 21234940 -80638229 - L1PA15 LINE L1 -3170 2976 2647 1656 185 110 0 chr13 21234940 21235232 -80637937 - MER1B DNA MER1_type 0 339 16 4410 258 17 21 chr13 21235267 21236588 -80636581 - L1PA15 LINE L1 -3537 2609 1294 264 312 20 15 chr13 21236822 21237024 -80636145 + L1ME3A LINE L1 5004 5206 -940 22 0 0 0 chr13 21237179 21237201 -80635968 + AT_rich Low_complexity Low_complexity 1 22 0 457 324 97 31 chr13 21237257 21237640 -80635529 + L1ME3A LINE L1 5539 5946 -224 23 33 0 0 chr13 21237890 21237920 -80635249 + AT_rich Low_complexity Low_complexity 1 30 0 411 276 199 32 chr13 21238148 21238304 -80634865 - MER5A DNA MER1_type -1 188 7 416 237 38 15 chr13 21238369 21238500 -80634669 + MER94 DNA DNA 1 134 0 2371 73 0 0 chr13 21238970 21239273 -80633896 + AluY SINE Alu 1 303 -8 3524 131 40 8 chr13 21239318 21239914 -80633255 - L1PA16 LINE L1 -2 6164 5550 12327 47 1 1 chr13 21239919 21242206 -80630963 - L1PA5 LINE L1 -3 6151 3854 5411 202 17 11 chr13 21242226 21243664 -80629505 - L1PA16 LINE L1 -600 5565 4123 21 36 0 0 chr13 21243734 21243762 -80629407 + AT_rich Low_complexity Low_complexity 1 28 0 835 415 70 61 chr13 21244910 21245337 -80627832 + Tigger2 DNA MER2_type 2 2716 -2 193 324 40 27 chr13 21245705 21245779 -80627390 - L3 LINE CR1 -434 1143 1069 285 323 116 0 chr13 21245972 21246127 -80627042 - L3 LINE CR1 -801 776 604 322 308 77 0 chr13 21246273 21246403 -80626766 - MIR SINE MIR -57 205 66 1075 236 55 63 chr13 21246525 21246982 -80626187 + L1ME2 LINE L1 5434 5886 -278 26 0 0 0 chr13 21247084 21247110 -80626059 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr13 21247140 21247162 -80626007 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 10461 35 1 8 chr13 21247162 21249208 -80623961 - L1PA3 LINE L1 -10 6145 4109 512 177 0 9 chr13 21251619 21251732 -80621437 + CT-rich Low_complexity Low_complexity 1 112 0 651 360 51 30 chr13 21252118 21252643 -80620526 + L1MEc LINE L1 82 617 -5779 * 3329 153 38 10 chr13 21252642 21252913 -80620256 + L1MC2 LINE L1 5201 5463 -881 2069 164 48 3 chr13 21252913 21253286 -80619883 - MLT1B LTR MaLR 0 390 1 3329 153 38 10 chr13 21253286 21253646 -80619523 + L1MC2 LINE L1 5463 5852 -492 529 202 69 32 chr13 21253925 21254164 -80619005 - MER57A-int LTR ERV1 -2710 3621 1548 2167 160 56 134 chr13 21254164 21254828 -80618341 - LTR9 LTR ERV1 0 612 1 309 175 0 0 chr13 21254917 21255003 -80618166 - MER57A-int LTR ERV1 -3202 2889 1865 461 245 0 0 chr13 21255254 21255348 -80617821 - MER57A-int LTR ERV1 -2991 3340 3247 271 204 0 87 chr13 21255437 21255540 -80617629 - MER57A-int LTR ERV1 -3735 1388 1295 * 337 211 61 26 chr13 21255512 21255626 -80617543 - MER57A-int LTR ERV1 -4612 1986 1869 359 260 13 53 chr13 21255626 21255882 -80617287 - MER34C LTR ERV1 -143 442 155 3901 165 20 6 chr13 21256128 21256897 -80616272 - MER57A-int LTR ERV1 -6695 842 1 2289 156 31 0 chr13 21256897 21257288 -80615881 - MER57A LTR ERV1 0 403 1 26 30 0 0 chr13 21257591 21257624 -80615545 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 21258097 21258119 -80615050 + AT_rich Low_complexity Low_complexity 1 22 0 1771 122 79 4 chr13 21259530 21259809 -80613360 - AluSx SINE Alu -10 302 3 1631 152 40 25 chr13 21260146 21260469 -80612700 + MER4A LTR ERV1 1 328 -336 2965 102 12 0 chr13 21260529 21260930 -80612239 + MLT2A2 LTR ERVL 1 406 -47 258 0 118 0 chr13 21260982 21261016 -80612153 + MLT2A2 LTR ERVL 416 453 0 * 549 189 253 26 chr13 21261016 21261246 -80611923 + MER4C LTR ERV1 165 447 -18 494 339 16 32 chr13 21261566 21261755 -80611414 + MIR SINE MIR 47 232 -30 33 73 0 0 chr13 21261763 21261831 -80611338 + AT_rich Low_complexity Low_complexity 1 68 0 2100 207 52 2 chr13 21262089 21262495 -80610674 - MSTB LTR MaLR 0 426 1 235 275 22 138 chr13 21263070 21263208 -80609961 + MIR3 SINE MIR 82 203 -5 372 348 39 11 chr13 21264153 21264331 -80608838 + MIR SINE MIR 49 231 -31 2137 180 55 2 chr13 21264453 21264853 -80608316 - MSTB1 LTR MaLR -8 424 4 334 265 98 0 chr13 21266740 21266872 -80606297 - L1M4 LINE L1 -2950 3196 3052 7643 255 50 15 chr13 21267147 21270879 -80602290 + L1PA13 LINE L1 1 4391 -2406 1756 180 91 14 chr13 21270979 21271395 -80601774 + L1MC2 LINE L1 5896 6343 -1 287 316 0 8 chr13 21271412 21271529 -80601640 + L1M4 LINE L1 4253 4368 -1778 * 827 127 0 0 chr13 21271528 21271646 -80601523 + THE1-int LTR MaLR 1208 1325 -255 959 290 40 40 chr13 21271707 21271775 -80601394 + L1M4 LINE L1 4416 4483 -1663 2166 105 43 65 chr13 21271775 21271816 -80601353 - THE1B LTR MaLR -1 363 323 1943 158 10 0 chr13 21271816 21272126 -80601043 + AluSq SINE Alu 1 313 0 2166 105 43 65 chr13 21272126 21272455 -80600714 - THE1B LTR MaLR -41 323 1 11491 98 3 1 chr13 21272455 21274032 -80599137 - THE1B-int LTR MaLR 0 1580 1 1955 131 56 47 chr13 21274032 21274391 -80598778 - THE1B LTR MaLR 0 364 3 959 290 40 40 chr13 21274391 21274633 -80598536 + L1M4 LINE L1 4481 4722 -1424 1778 155 29 0 chr13 21274633 21274910 -80598259 - AluSx SINE Alu -27 285 1 959 290 40 40 chr13 21274910 21275214 -80597955 + L1M4 LINE L1 4721 5033 -1113 1007 153 24 17 chr13 21275223 21275427 -80597742 - MER52C LTR ERV1 -1093 185 1 737 205 19 26 chr13 21275430 21275586 -80597583 + L1ME1 LINE L1 5986 6140 -26 22 56 0 0 chr13 21275602 21275638 -80597531 + AT_rich Low_complexity Low_complexity 1 36 0 212 313 50 0 chr13 21276161 21276241 -80596928 - L2 LINE L2 -1 3312 3229 191 383 94 16 chr13 21276472 21276600 -80596569 + MIR3 SINE MIR 4 141 -67 267 261 0 29 chr13 21276622 21276691 -80596478 + MIR SINE MIR 196 262 0 4675 175 32 13 chr13 21277134 21278360 -80594809 - L1PA16 LINE L1 0 6166 4915 180 0 0 0 chr13 21280368 21280388 -80592781 + (A)n Simple_repeat Simple_repeat 1 20 0 1827 148 4 0 chr13 21280450 21280721 -80592448 - AluSg SINE Alu -17 293 22 2821 86 20 13 chr13 21281064 21281461 -80591708 + MLT2A1 LTR ERVL 1 400 -44 247 100 100 0 chr13 21281516 21281566 -80591603 + MLT2A1 LTR ERVL 399 453 0 353 325 61 15 chr13 21282681 21282878 -80590291 + MIR SINE MIR 3 208 -54 983 224 0 45 chr13 21282899 21283167 -80590002 + L1MA4 LINE L1 6005 6260 -40 360 43 0 0 chr13 21283234 21283280 -80589889 + (TG)n Simple_repeat Simple_repeat 2 47 0 5028 176 18 17 chr13 21283441 21284229 -80588940 + L1PA15 LINE L1 3924 4709 -1456 2626 154 2 16 chr13 21284229 21284663 -80588506 - MSTA LTR MaLR 0 428 1 5028 176 18 17 chr13 21284663 21286111 -80587058 + L1PA15 LINE L1 4709 6163 -2 202 316 214 8 chr13 21287313 21287430 -80585739 - MIR SINE MIR -6 256 116 34 55 0 0 chr13 21288044 21288099 -80585070 + AT_rich Low_complexity Low_complexity 1 55 0 30258 48 34 8 chr13 21288155 21292092 -80581077 + L1P LINE L1 1 4038 -2108 486 0 0 0 chr13 21292783 21292837 -80580332 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 276 301 111 13 chr13 21294042 21294195 -80578974 - L1MC/D LINE L1 -2233 5575 5408 276 407 0 7 chr13 21295795 21295930 -80577239 - L2 LINE L2 -1 3271 3138 259 285 78 24 chr13 21295929 21296056 -80577113 + MIR3 SINE MIR 12 146 -67 * 3985 192 30 37 chr13 21296242 21297526 -80575643 - L1MB4 LINE L1 0 6180 4909 245 292 83 4 chr13 21297593 21297709 -80575460 - L1M4c LINE L1 -5710 936 642 21 36 0 0 chr13 21298161 21298189 -80574980 + AT_rich Low_complexity Low_complexity 1 28 0 267 81 50 40 chr13 21298685 21298784 -80574385 + (TA)n Simple_repeat Simple_repeat 1 100 0 4601 31 0 0 chr13 21300106 21300655 -80572514 - L1PA4 LINE L1 0 6155 5607 267 114 0 0 chr13 21301184 21301228 -80571941 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 391 274 41 123 chr13 21301236 21301601 -80571568 - L2 LINE L2 -20 3293 2959 1794 249 46 69 chr13 21301630 21302265 -80570904 - MLT1E2 LTR MaLR -6 620 1 182 248 314 9 chr13 21302265 21302370 -80570799 - L2 LINE L2 -378 2936 2800 358 328 32 0 chr13 21302370 21302495 -80570674 - L2 LINE L2 -458 2856 2728 23 33 0 0 chr13 21302592 21302622 -80570547 + AT_rich Low_complexity Low_complexity 1 30 0 511 210 19 70 chr13 21302898 21303055 -80570114 - MIR SINE MIR -21 241 93 295 255 0 39 chr13 21303055 21303157 -80570012 + L1MA9 LINE L1 6185 6282 -30 291 359 32 26 chr13 21303251 21303407 -80569762 - MIR SINE MIR -79 183 27 795 170 12 64 chr13 21303484 21303655 -80569514 - MER58A DNA MER1_type -3 221 60 4095 183 7 16 chr13 21303655 21303866 -80569303 - MER44D DNA MER2_type -1882 605 394 2998 195 16 67 chr13 21303866 21304594 -80568575 - LTR8 LTR ERV1 0 691 1 4095 183 7 16 chr13 21304594 21304781 -80568388 - MER44D DNA MER2_type -2093 394 207 2180 191 20 75 chr13 21304781 21305367 -80567802 + MLT2B3 LTR ERVL 1 554 0 4095 183 7 16 chr13 21305367 21305701 -80567468 - MER44D DNA MER2_type -2280 207 7 296 242 0 15 chr13 21305704 21305770 -80567399 - MER58A DNA MER1_type -42 65 1 681 266 51 65 chr13 21305789 21306023 -80567146 + L1ME3A LINE L1 5821 6050 -120 1248 139 0 23 chr13 21306023 21306239 -80566930 + L1PA15 LINE L1 5948 6158 -7 681 266 51 65 chr13 21306239 21306358 -80566811 + L1ME3A LINE L1 6050 6169 -1 444 337 50 0 chr13 21306516 21306718 -80566451 - MIR SINE MIR 0 262 51 3542 145 51 73 chr13 21306881 21307603 -80565566 - MER50 LTR ERV1 -28 706 1 229 306 62 62 chr13 21308138 21308298 -80564871 + L2 LINE L2 3151 3310 -3 841 196 57 10 chr13 21309228 21309423 -80563746 + L1MC4 LINE L1 7599 7713 -95 184 378 78 0 chr13 21310231 21310321 -80562848 - L2 LINE L2 -24 3248 3152 2246 237 86 9 chr13 21310415 21311064 -80562105 + L1MC3 LINE L1 6100 6798 -987 1142 243 39 3 chr13 21312175 21312459 -80560710 - MER67D LTR ERV1 -4 510 217 2472 165 20 41 chr13 21312469 21313009 -80560160 - L1MA9 LINE L1 -2 6310 5782 183 80 0 0 chr13 21313020 21313045 -80560124 + (CA)n Simple_repeat Simple_repeat 2 26 0 303 28 0 0 chr13 21313090 21313126 -80560043 + (TA)n Simple_repeat Simple_repeat 1 36 0 1151 137 71 0 chr13 21313136 21313348 -80559821 - L1MA9 LINE L1 -523 5789 5563 966 151 0 121 chr13 21313357 21313589 -80559580 - MER67D LTR ERV1 -296 218 15 246 369 25 8 chr13 21313800 21313922 -80559247 + MER5A DNA MER1_type 66 189 0 538 320 84 19 chr13 21314127 21314449 -80558720 + L1ME3A LINE L1 5807 6149 -21 2155 64 17 20 chr13 21314477 21314773 -80558396 + AluY SINE Alu 1 295 -16 654 386 6 6 chr13 21314903 21315224 -80557945 + LTR16B LTR ERVL 77 397 -67 247 323 21 11 chr13 21315375 21315468 -80557701 - L2 LINE L2 0 3313 3220 333 149 0 0 chr13 21315468 21315535 -80557634 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 313 266 114 93 chr13 21315535 21315825 -80557344 - L2 LINE L2 -824 2490 2195 570 240 8 8 chr13 21316119 21316248 -80556921 + FLAM_A SINE Alu 1 129 -4 286 294 127 0 chr13 21316744 21316870 -80556299 - MIR SINE MIR 0 262 121 917 249 24 40 chr13 21317142 21317519 -80555650 + L1ME1 LINE L1 3224 3594 -2552 2132 236 92 39 chr13 21317551 21317802 -80555367 + L1ME1 LINE L1 5317 5553 -613 1576 192 14 3 chr13 21317802 21318094 -80555075 + AluJo SINE Alu 6 300 -12 2132 236 92 39 chr13 21318094 21318631 -80554538 + L1ME1 LINE L1 5553 6147 -19 389 224 0 0 chr13 21319149 21319216 -80553953 + MER2 DNA MER2_type 278 344 -1 1069 183 78 47 chr13 21319413 21319828 -80553341 - MLT1D LTR MaLR 0 505 41 1876 156 3 0 chr13 21319828 21320117 -80553052 - AluSx SINE Alu -21 291 2 1069 183 78 47 chr13 21320117 21320160 -80553009 - MLT1D LTR MaLR -464 41 1 189 0 0 0 chr13 21321445 21321466 -80551703 + (T)n Simple_repeat Simple_repeat 1 21 0 534 273 44 54 chr13 21322085 21322290 -80550879 - LTR33 LTR ERVL -309 212 10 1709 302 96 21 chr13 21322292 21322962 -80550207 - HAL1 LINE L1 -68 2439 1820 503 103 13 0 chr13 21322962 21323040 -80550129 + MADE1 DNA Mariner 1 79 -1 1709 302 96 21 chr13 21323040 21323112 -80550057 - HAL1 LINE L1 -687 1820 1755 207 0 0 0 chr13 21323112 21323135 -80550034 + (TG)n Simple_repeat Simple_repeat 2 24 0 1709 302 96 21 chr13 21323135 21323370 -80549799 - HAL1 LINE L1 -752 1755 1388 222 264 0 0 chr13 21324476 21324529 -80548640 + (TG)n Simple_repeat Simple_repeat 1 53 0 180 359 145 23 chr13 21324926 21325057 -80548112 - L2 LINE L2 -2734 580 434 393 221 11 21 chr13 21325498 21325593 -80547576 + MER81 DNA DNA 6 99 -15 549 350 34 0 chr13 21327057 21327234 -80545935 + MER91A DNA MER1_type 2 184 -12 1646 95 5 5 chr13 21328317 21328539 -80544630 + AluSx SINE Alu 1 222 -90 400 303 64 77 chr13 21331268 21332314 -80540855 + L1MEc LINE L1 786 1817 -4579 506 303 74 57 chr13 21332323 21332520 -80540649 + L1MEc LINE L1 1880 2072 -4324 239 54 27 0 chr13 21332520 21332557 -80540612 + (TG)n Simple_repeat Simple_repeat 2 39 0 506 303 74 57 chr13 21332557 21332818 -80540351 + L1MEc LINE L1 2072 2346 -4050 319 305 24 43 chr13 21333026 21333190 -80539979 - L1ME LINE L1 -5897 173 13 309 169 0 0 chr13 21334072 21334131 -80539038 + L1MA2 LINE L1 6246 6304 0 30 45 0 0 chr13 21334131 21334175 -80538994 + AT_rich Low_complexity Low_complexity 1 44 0 1104 283 106 45 chr13 21335722 21336281 -80536888 - MLT1E LTR MaLR 0 593 1 21 0 0 0 chr13 21336628 21336649 -80536520 + AT_rich Low_complexity Low_complexity 1 21 0 2358 99 0 13 chr13 21337265 21337579 -80535590 + AluY SINE Alu 1 310 -1 2200 97 16 13 chr13 21337604 21337913 -80535256 + AluSg SINE Alu 1 310 0 273 294 185 8 chr13 21337941 21338060 -80535109 - LTR50 LTR ERVL -612 183 44 575 273 118 51 chr13 21338098 21338453 -80534716 + LTR16A LTR ERVL 67 445 -5 1249 284 88 49 chr13 21338822 21339473 -80533696 - ERVL LTR ERVL -290 5474 4799 6059 75 157 38 chr13 21339713 21340760 -80532409 - MER11A LTR ERVK 0 1266 1 297 314 81 16 chr13 21340969 21341093 -80532076 - L2 LINE L2 -515 2799 2668 2076 158 42 34 chr13 21341157 21341704 -80531465 + MLT2A2 LTR ERVL 1 554 0 557 296 26 57 chr13 21341704 21341934 -80531235 - L2 LINE L2 -991 2323 2101 238 340 57 9 chr13 21342549 21342655 -80530514 - MER5B DNA MER1_type -50 128 18 3476 47 2 0 chr13 21342698 21343128 -80530041 + L1PA5 LINE L1 5720 6150 -4 390 322 65 50 chr13 21344344 21344543 -80528626 - MIR SINE MIR -15 247 46 420 291 54 73 chr13 21344687 21344929 -80528240 - L1M4 LINE L1 -4255 2570 2325 1266 209 95 4 chr13 21344929 21345202 -80527967 + AluJo SINE Alu 1 298 -14 420 291 54 73 chr13 21345202 21345481 -80527688 - L1M4 LINE L1 -4500 2325 2059 * 1899 260 67 39 chr13 21345479 21346704 -80526465 - L1MB7 LINE L1 -3 6181 4903 1156 314 17 101 chr13 21346760 21347168 -80526001 - MLT1A2 LTR MaLR 0 374 1 1172 237 65 67 chr13 21347173 21347485 -80525684 - MLT1D LTR MaLR 0 505 193 2129 130 7 3 chr13 21347485 21347792 -80525377 - AluSg SINE Alu -2 308 1 1172 237 65 67 chr13 21347792 21347956 -80525213 - MLT1D LTR MaLR -312 193 30 1141 248 60 86 chr13 21347978 21349001 -80524168 - L1M4 LINE L1 -4782 1864 875 605 231 26 6 chr13 21349422 21349578 -80523591 - MER57A LTR ERV1 -1 402 244 1637 67 0 0 chr13 21349578 21349788 -80523381 - L1PA8 LINE L1 -187 5944 5735 1545 101 0 0 chr13 21349788 21350004 -80523165 + L1PA8 LINE L1 5941 6158 -14 22 0 0 0 chr13 21350004 21350026 -80523143 + AT_rich Low_complexity Low_complexity 1 22 0 635 220 10 131 chr13 21350026 21350256 -80522913 - MER57B LTR ERV1 -160 274 44 773 296 54 25 chr13 21350277 21350594 -80522575 - MER31-int LTR ERV1 -491 7325 7000 1069 259 33 72 chr13 21352126 21352516 -80520653 - MER31-int LTR ERV1 -1338 6199 5825 3116 224 84 67 chr13 21352851 21354822 -80518347 - MER31-int LTR ERV1 -1492 3444 1959 437 206 37 19 chr13 21355011 21355118 -80518051 - MER34 LTR ERV1 -304 238 130 425 236 75 57 chr13 21355288 21355680 -80517489 - MER31-int LTR ERV1 -374 1412 1029 369 242 0 0 chr13 21356063 21356129 -80517040 - MER31-int LTR ERV1 -7238 299 234 1610 171 0 0 chr13 21356355 21356641 -80516528 - L1P LINE L1 -3774 2372 2087 2432 256 77 26 chr13 21356725 21357425 -80515744 + MER21B LTR ERV1 98 833 -30 22 0 0 0 chr13 21357471 21357493 -80515676 + AT_rich Low_complexity Low_complexity 1 22 0 1481 139 4 0 chr13 21358096 21358333 -80514836 + L1PA13 LINE L1 5735 5972 -191 1180 268 100 33 chr13 21358940 21359369 -80513800 + MLT2B1 LTR ERVL 1 458 -62 646 247 60 11 chr13 21359783 21359965 -80513204 - MIR SINE MIR -4 258 68 625 328 37 72 chr13 21360877 21361077 -80512092 - L1MEc LINE L1 -5668 728 522 1957 153 0 0 chr13 21361077 21361365 -80511804 + AluSg SINE Alu 1 288 -22 625 328 37 72 chr13 21361365 21361676 -80511493 - L1MEc LINE L1 -5874 522 235 2532 56 0 3 chr13 21361761 21362066 -80511103 - AluY SINE Alu -7 304 1 628 127 48 8 chr13 21362407 21362533 -80510636 - L1MA2 LINE L1 0 6304 6174 1834 92 4 0 chr13 21363063 21363303 -80509866 - AluSx SINE Alu -15 297 57 266 280 93 0 chr13 21363592 21363699 -80509470 + LTR41 LTR ERVL 89 205 -568 368 198 47 28 chr13 21363900 21364006 -80509163 + LTR41 LTR ERVL 584 691 -82 5522 137 66 14 chr13 21364112 21365054 -80508115 + MSTA-int LTR MaLR 590 1580 0 1570 157 208 14 chr13 21365054 21365405 -80507764 + MSTA LTR MaLR 1 419 -9 373 310 84 25 chr13 21366023 21366226 -80506943 + L1 LINE L1 3128 3342 -2804 4999 236 59 32 chr13 21367288 21369690 -80503479 + L1PA11 LINE L1 1 3582 -4002 16681 160 20 0 chr13 21369691 21373526 -80499643 + L1PA11 LINE L1 3669 7610 -2 246 105 0 0 chr13 21373565 21373603 -80499566 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2296 95 0 3 chr13 21373977 21374271 -80498898 + AluSp SINE Alu 1 293 -20 198 333 54 27 chr13 21375060 21375171 -80497998 - L2 LINE L2 -5 3308 3195 1067 115 25 0 chr13 21375355 21375512 -80497657 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 21375516 21375547 -80497622 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2333 85 7 0 chr13 21375645 21375952 -80497217 + AluSc SINE Alu 1 309 0 740 348 0 0 chr13 21376039 21376260 -80496909 - MIR SINE MIR -30 232 12 4138 244 39 66 chr13 21376579 21378220 -80494949 + L1MB8 LINE L1 19 1615 -4927 729 201 0 7 chr13 21378221 21378360 -80494809 + FRAM SINE Alu 1 132 -44 765 176 0 0 chr13 21378386 21378511 -80494658 - FLAM_C SINE Alu -18 125 1 1057 223 11 26 chr13 21378511 21378776 -80494393 + L1MB8 LINE L1 4113 4373 -2271 * 1533 257 56 21 chr13 21378773 21379345 -80493824 + L1MB8 LINE L1 4942 5533 -1111 2071 200 50 43 chr13 21379356 21379474 -80493695 + L1MB8 LINE L1 5753 5869 -813 632 184 0 64 chr13 21379474 21379615 -80493554 + FLAM_C SINE Alu 1 132 -1 2071 200 50 43 chr13 21379615 21380101 -80493068 + L1MB8 LINE L1 5869 6361 -321 403 91 0 65 chr13 21380140 21380217 -80492952 + FLAM_C SINE Alu 70 141 -2 1496 172 17 7 chr13 21380218 21380509 -80492660 + L1MB8 LINE L1 6377 6670 -6 4126 173 19 55 chr13 21380582 21381337 -80491832 + L1MB4 LINE L1 5243 5955 -225 2171 88 35 0 chr13 21381337 21381620 -80491549 + AluSg SINE Alu 1 293 -17 4126 173 19 55 chr13 21381620 21381839 -80491330 + L1MB4 LINE L1 5955 6180 0 257 202 76 8 chr13 21383325 21383444 -80489725 - L1ME4a LINE L1 -11 6110 5984 25 31 0 0 chr13 21383556 21383588 -80489581 + AT_rich Low_complexity Low_complexity 1 32 0 2404 176 36 5 chr13 21383589 21384038 -80489131 + LTR24 LTR ERV1 5 467 0 1537 233 11 31 chr13 21384038 21384558 -80488611 + LTR24-int LTR ERV1 1 651 -4472 324 375 109 14 chr13 21384582 21384857 -80488312 + PABL_B-int LTR ERV1 379 679 -6079 422 209 0 33 chr13 21384871 21384962 -80488207 + PABL_B-int LTR ERV1 654 741 -4382 246 193 11 80 chr13 21385282 21385370 -80487799 + CT-rich Low_complexity Low_complexity 3 84 0 871 333 48 30 chr13 21386884 21387385 -80485784 + PABL_B-int LTR ERV1 153 662 -3985 288 222 16 0 chr13 21387486 21387549 -80485620 + PABL_B-int LTR ERV1 4173 4236 -4683 317 331 7 42 chr13 21388585 21388727 -80484442 + PABL_B-int LTR ERV1 5633 5769 -1353 1126 334 56 26 chr13 21388997 21389640 -80483529 + PABL_B-int LTR ERV1 6014 6675 -447 2741 154 57 23 chr13 21390112 21390677 -80482492 + LTR24B LTR ERV1 3 635 0 207 377 29 0 chr13 21390888 21390957 -80482212 - L2 LINE L2 -94 3178 3108 2157 155 137 42 chr13 21391283 21391824 -80481345 + LTR49 LTR ERV1 4 595 0 226 283 98 22 chr13 21392885 21392977 -80480192 + MIR SINE MIR 50 148 -114 857 171 19 6 chr13 21393067 21393225 -80479944 + MLT1A1 LTR MaLR 1 160 -205 921 288 113 15 chr13 21393535 21393935 -80479234 - LTR16A1 LTR ERVL 0 457 19 181 380 36 15 chr13 21394450 21394587 -80478582 - L2 LINE L2 -453 2861 2722 300 170 130 80 chr13 21395820 21395920 -80477249 - MIR SINE MIR -76 186 82 2162 118 0 3 chr13 21395949 21396254 -80476915 + AluSx SINE Alu 5 308 -4 21 0 0 0 chr13 21396333 21396354 -80476815 + AT_rich Low_complexity Low_complexity 1 21 0 1999 207 40 24 chr13 21396396 21396893 -80476276 - MLT1D LTR MaLR 0 505 1 1915 105 3 99 chr13 21396956 21397288 -80475881 + AluSq SINE Alu 1 300 -13 1952 156 3 0 chr13 21398336 21398631 -80474538 + AluSx SINE Alu 1 296 -16 278 233 62 85 chr13 21399133 21399262 -80473907 - L1ME LINE L1 -5900 170 45 4218 130 24 1 chr13 21399372 21400048 -80473121 + L1PA16 LINE L1 5465 6155 -11 32 26 0 0 chr13 21400901 21400940 -80472229 + AT_rich Low_complexity Low_complexity 1 39 0 12703 173 20 96 chr13 21401021 21402476 -80470693 + L1PA7 LINE L1 10 1573 -4888 2245 127 0 0 chr13 21402476 21402784 -80470385 + AluSx SINE Alu 1 308 -4 12703 173 20 96 chr13 21402784 21403936 -80469233 + L1PA7 LINE L1 1573 2203 -4258 6732 88 15 3 chr13 21403936 21405673 -80467496 + L1PA7 LINE L1 4699 6464 -5 12703 173 20 96 chr13 21405673 21407380 -80465789 + L1PA7 LINE L1 2203 4037 -2424 581 77 0 0 chr13 21408206 21408284 -80464885 + Alu SINE Alu 1 78 -232 2205 186 19 12 chr13 21408285 21408699 -80464470 + MER47B DNA MER2_type 2 418 0 915 316 104 38 chr13 21408752 21408820 -80464349 + L1ME LINE L1 817 879 -5517 19564 114 14 2 chr13 21408820 21412708 -80460461 + L1PA8 LINE L1 2243 6172 0 915 316 104 38 chr13 21412708 21413528 -80459641 + L1ME LINE L1 879 1814 -4582 243 107 27 80 chr13 21413657 21413732 -80459437 + A-rich Low_complexity Low_complexity 5 75 0 989 267 33 11 chr13 21413765 21414228 -80458941 + L1ME LINE L1 2176 2610 -3605 2073 121 7 0 chr13 21414228 21414531 -80458638 - AluSp SINE Alu 0 305 1 431 256 81 60 chr13 21414682 21414916 -80458253 + L1ME LINE L1 2683 2921 -3294 2411 138 4 21 chr13 21414917 21415577 -80457592 - L1P4 LINE L1 -615 5548 4896 15755 97 10 0 chr13 21415597 21416326 -80456843 + L1PA7 LINE L1 3058 3778 -2376 2342 89 0 0 chr13 21416326 21416618 -80456551 + AluY SINE Alu 1 292 -19 15755 97 10 0 chr13 21416618 21418978 -80454191 + L1PA7 LINE L1 3778 6150 -4 2693 114 0 0 chr13 21418985 21419380 -80453789 + L1PA13 LINE L1 5769 6163 0 294 259 44 0 chr13 21419394 21419529 -80453640 + L1ME LINE L1 2932 3072 -3143 1056 101 0 13 chr13 21419678 21419837 -80453332 + L1PA11 LINE L1 6018 6174 0 263 146 37 61 chr13 21419857 21419939 -80453230 + L1M LINE L1 5293 5372 -792 190 403 0 0 chr13 21420309 21420386 -80452783 - L2 LINE L2 -561 2753 2677 308 219 49 18 chr13 21421052 21421216 -80451953 + (TA)n Simple_repeat Simple_repeat 2 170 0 300 198 18 135 chr13 21421252 21421363 -80451806 + MER106B DNA MER1_type 5 102 -957 1858 316 82 40 chr13 21421462 21422206 -80450963 - L2 LINE L2 -44 3269 2557 1777 167 13 60 chr13 21422206 21422252 -80450917 + MLT1A1 LTR MaLR 1 48 -317 2271 107 0 3 chr13 21422252 21422552 -80450617 - AluSc SINE Alu -10 299 1 1777 167 13 60 chr13 21422552 21422888 -80450281 + MLT1A1 LTR MaLR 48 365 0 1858 316 82 40 chr13 21422888 21423332 -80449837 - L2 LINE L2 -756 2557 888 4904 205 35 32 chr13 21423333 21424492 -80448677 + L1MCa LINE L1 4 1166 -5260 * 12312 50 2 8 chr13 21424489 21426088 -80447081 - L1PA3 LINE L1 -3647 2499 910 23387 36 5 0 chr13 21426088 21429729 -80443440 + L1PA3 LINE L1 2508 6153 -2 1781 235 64 29 chr13 21429729 21430538 -80442631 + L1MCa LINE L1 1152 2019 -4407 226 103 0 0 chr13 21430538 21430606 -80442563 - Alu SINE Alu 0 323 256 1411 154 20 20 chr13 21430610 21430856 -80442313 + AluJo SINE Alu 57 302 -10 7149 216 56 16 chr13 21430856 21432788 -80440381 + L1MCa LINE L1 2577 4585 -1841 5277 159 33 29 chr13 21432783 21433943 -80439226 + L1MA9 LINE L1 5135 6302 -10 * 4553 234 54 81 chr13 21433963 21436478 -80436691 + L1M4 LINE L1 2163 4608 -1538 213 298 0 0 chr13 21437408 21437465 -80435704 + L2 LINE L2 2583 2639 -675 193 348 76 0 chr13 21438817 21438909 -80434260 + L2 LINE L2 3180 3278 -35 259 263 113 12 chr13 21438935 21439015 -80434154 + MIR SINE MIR 172 259 -3 198 0 0 0 chr13 21439630 21439652 -80433517 + (T)n Simple_repeat Simple_repeat 1 22 0 564 386 96 6 chr13 21439735 21440333 -80432836 + L2 LINE L2 2631 3282 -31 249 57 0 0 chr13 21440336 21440371 -80432798 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 288 313 78 0 chr13 21441128 21441243 -80431926 + MIR SINE MIR 70 193 -69 28 0 0 0 chr13 21441357 21441385 -80431784 + AT_rich Low_complexity Low_complexity 1 28 0 888 333 89 43 chr13 21441576 21441677 -80431492 + L2 LINE L2 1527 1622 -1692 2368 106 0 0 chr13 21441677 21441989 -80431180 - AluSp SINE Alu -1 312 1 888 333 89 43 chr13 21441989 21442496 -80430673 + L2 LINE L2 1622 2189 -1125 2349 166 31 0 chr13 21442496 21442911 -80430258 - MSTA LTR MaLR 0 428 1 888 333 89 43 chr13 21442911 21443161 -80430008 + L2 LINE L2 2189 2426 -888 267 31 0 0 chr13 21443995 21444027 -80429142 + (TTG)n Simple_repeat Simple_repeat 2 33 0 557 250 15 8 chr13 21444061 21444193 -80428976 + ERVL LTR ERVL 1920 2052 -2944 1932 323 105 57 chr13 21444510 21446383 -80426786 + ERVL LTR ERVL 2479 4534 -1230 2453 138 44 10 chr13 21446383 21446795 -80426374 - MSTA LTR MaLR -2 426 1 1932 323 105 57 chr13 21446795 21446949 -80426220 + ERVL LTR ERVL 4534 4679 -1085 912 181 36 10 chr13 21446949 21447222 -80425947 - MLT1A2 LTR MaLR -2 372 4 501 331 23 8 chr13 21447724 21447990 -80425179 + ERVL LTR ERVL 4727 4996 0 2463 62 0 7 chr13 21448044 21448353 -80424816 + AluY SINE Alu 1 307 -4 407 265 7 52 chr13 21448353 21448484 -80424685 + LTR16B LTR ERVL 35 159 -305 659 264 64 21 chr13 21448520 21448755 -80424414 + LTR16B LTR ERVL 220 464 0 1263 296 52 28 chr13 21450197 21450879 -80422290 - L1ME3A LINE L1 -144 6095 5387 1813 160 6 6 chr13 21450946 21451258 -80421911 - AluJb SINE Alu 0 312 1 539 202 191 7 chr13 21451308 21451505 -80421664 + L1MA4 LINE L1 6067 6287 -10 1002 290 82 28 chr13 21451520 21451960 -80421209 - L1ME3A LINE L1 -2929 3286 2795 786 188 35 6 chr13 21451960 21452130 -80421039 - L1MC1 LINE L1 0 6333 6159 1002 290 82 28 chr13 21452130 21452368 -80420801 - L1ME3A LINE L1 -3420 2795 2571 383 294 19 39 chr13 21452436 21452679 -80420490 - L1MEc LINE L1 -3840 2375 2172 268 232 0 14 chr13 21452674 21452743 -80420426 - L1 LINE L1 -2191 3955 3888 * 551 308 91 14 chr13 21452790 21453076 -80420093 - MLT1I LTR MaLR -7 402 95 271 272 0 76 chr13 21453635 21453727 -80419442 - L2 LINE L2 0 3272 3188 4260 115 17 5 chr13 21454621 21455273 -80417896 - L1PA11 LINE L1 -4 6821 6162 3474 150 20 3 chr13 21455359 21456142 -80417027 - L1PA11 LINE L1 -662 6150 5359 1438 119 0 68 chr13 21456142 21456378 -80416791 - AluSc SINE Alu -9 300 81 4613 48 17 2 chr13 21456382 21456960 -80416209 - LTR14C LTR ERVK 0 587 1 982 192 35 0 chr13 21456961 21457164 -80416005 - L1PA11 LINE L1 -1436 5361 5152 * 1914 147 6 0 chr13 21457145 21457534 -80415635 - L1PA11 LINE L1 -4425 2372 1971 609 144 0 0 chr13 21457534 21457652 -80415517 + AluSg/x SINE Alu 190 307 0 657 210 64 56 chr13 21457744 21457977 -80415192 + MER106A DNA MER1_type 1 235 -1 379 313 122 26 chr13 21458263 21458493 -80414676 - MIR SINE MIR -9 253 2 527 114 13 0 chr13 21458948 21459027 -80414142 - MADE1 DNA Mariner 0 80 1 26 64 0 0 chr13 21459053 21459100 -80414069 + AT_rich Low_complexity Low_complexity 1 47 0 30 0 0 0 chr13 21459116 21459146 -80414023 + AT_rich Low_complexity Low_complexity 1 30 0 223 271 0 0 chr13 21459219 21459278 -80413891 + CT-rich Low_complexity Low_complexity 3 61 0 333 319 68 43 chr13 21459289 21459452 -80413717 - MIR SINE MIR -76 186 20 378 287 60 60 chr13 21460078 21460245 -80412924 + MER5A DNA MER1_type 7 173 -16 3156 218 22 87 chr13 21460659 21462550 -80410619 + L1ME2 LINE L1 11 2115 -4826 685 150 0 0 chr13 21462554 21462654 -80410515 + AluJ/FLAM SINE Alu 3 102 -210 216 0 0 0 chr13 21462673 21462697 -80410472 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 245 227 86 57 chr13 21462711 21462867 -80410302 + L1ME2 LINE L1 2225 2421 -4557 253 333 61 56 chr13 21463136 21463367 -80409802 - L2 LINE L2 -850 2464 2233 909 104 0 8 chr13 21463380 21463545 -80409624 - AluSg/x SINE Alu 0 322 159 2068 109 23 3 chr13 21463562 21463866 -80409303 + AluSx SINE Alu 3 312 0 250 406 64 5 chr13 21464242 21464429 -80408740 + MLT1K LTR MaLR 189 386 -202 325 148 25 25 chr13 21464478 21464559 -80408610 + CT-rich Low_complexity Low_complexity 2 82 0 22 94 0 0 chr13 21465333 21465397 -80407772 + AT_rich Low_complexity Low_complexity 1 64 0 210 154 0 0 chr13 21465582 21465621 -80407548 + T-rich Low_complexity Low_complexity 3 41 0 216 281 0 0 chr13 21465628 21465685 -80407484 + L2 LINE L2 3215 3271 -1 537 181 0 0 chr13 21465919 21466096 -80407073 + (TA)n Simple_repeat Simple_repeat 1 177 0 300 183 215 0 chr13 21466568 21466580 -80406589 - L1MA4A LINE L1 0 6303 6292 1435 171 96 42 chr13 21466580 21466936 -80406233 - L1PB4 LINE L1 -5 6151 5777 4296 225 59 57 chr13 21467049 21468005 -80405164 + L1ME2 LINE L1 4415 5368 -1591 1816 181 0 0 chr13 21468005 21468303 -80404866 - AluJo SINE Alu -14 298 1 4296 225 59 57 chr13 21468303 21469396 -80403773 + L1ME2 LINE L1 5368 6469 -490 2098 134 0 0 chr13 21469396 21469695 -80403474 + AluSx SINE Alu 4 302 -10 4296 225 59 57 chr13 21469695 21470078 -80403091 + L1ME2 LINE L1 6469 6850 -109 244 172 35 0 chr13 21470080 21470138 -80403031 + Charlie4 DNA MER1_type 1840 1899 -62 23 0 0 0 chr13 21471071 21471094 -80402075 + AT_rich Low_complexity Low_complexity 1 23 0 206 146 24 0 chr13 21471110 21471124 -80402045 + (TA)n Simple_repeat Simple_repeat 2 14 -29 189 0 0 0 chr13 21471124 21471145 -80402024 + (GA)n Simple_repeat Simple_repeat 2 22 0 206 146 24 0 chr13 21471145 21471171 -80401998 + (TA)n Simple_repeat Simple_repeat 14 43 0 2937 89 1 1 chr13 21471449 21472064 -80401105 + PABL_A LTR ERV1 1 660 0 1748 276 80 25 chr13 21473202 21474203 -80398966 - L1MEc LINE L1 -4098 2727 1510 498 33 0 0 chr13 21474203 21474263 -80398906 + (TG)n Simple_repeat Simple_repeat 1 60 0 1748 276 80 25 chr13 21474263 21474319 -80398850 - L1MEc LINE L1 -5315 1510 1459 1315 267 126 20 chr13 21474340 21475000 -80398169 - L1MEc LINE L1 -5290 1535 806 433 257 103 17 chr13 21475060 21475235 -80397934 - L1MEc LINE L1 -6170 655 466 242 258 15 0 chr13 21476214 21476280 -80396889 + (TA)n Simple_repeat Simple_repeat 2 68 0 320 216 62 72 chr13 21476280 21476377 -80396792 - L1MC4 LINE L1 -1334 6708 6613 29 47 0 0 chr13 21476399 21476442 -80396727 + AT_rich Low_complexity Low_complexity 1 43 0 1928 119 20 20 chr13 21476494 21476787 -80396382 - AluSx SINE Alu -19 293 1 1598 225 54 61 chr13 21477775 21478335 -80394834 - MER74B LTR ERVL -14 608 53 248 292 0 15 chr13 21480234 21480299 -80392870 - L2 LINE L2 0 3313 3250 22 0 0 0 chr13 21480756 21480778 -80392391 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 21481024 21481052 -80392117 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 21481364 21481390 -80391779 + AT_rich Low_complexity Low_complexity 1 26 0 3645 134 45 0 chr13 21481994 21482597 -80390572 + L1MC1 LINE L1 5704 6333 0 289 309 32 16 chr13 21485617 21485740 -80387429 + L2 LINE L2 3148 3272 0 994 318 172 32 chr13 21487478 21488351 -80384818 + L2 LINE L2 685 1679 -1635 193 235 0 0 chr13 21488406 21488457 -80384712 + L2 LINE L2 3263 3313 0 195 218 0 0 chr13 21488480 21488535 -80384634 + (TG)n Simple_repeat Simple_repeat 1 55 0 1992 131 20 0 chr13 21488751 21489056 -80384113 - AluY SINE Alu 0 311 1 26 50 0 0 chr13 21489138 21489178 -80383991 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chr13 21490718 21490741 -80382428 + (TTA)n Simple_repeat Simple_repeat 2 24 0 354 207 11 11 chr13 21490966 21491053 -80382116 + L1ME LINE L1 5548 5634 -487 215 324 0 63 chr13 21491503 21491614 -80381555 + MIR3 SINE MIR 2 105 -103 522 98 76 0 chr13 21492322 21492414 -80380755 - Tigger2 DNA MER2_type -187 2531 2433 275 243 233 0 chr13 21493656 21493759 -80379410 + HsTC2 DNA Tc2 1 127 -1771 357 296 61 8 chr13 21493811 21493943 -80379226 + HsTC2 DNA Tc2 1159 1297 -601 227 272 107 0 chr13 21493948 21494051 -80379118 + HsTC2 DNA Tc2 1638 1751 -147 2057 137 78 6 chr13 21494207 21494566 -80378603 - Tigger2 DNA MER2_type 0 2718 2334 189 0 0 0 chr13 21494697 21494718 -80378451 + (TG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 21494718 21494740 -80378429 + AT_rich Low_complexity Low_complexity 1 22 0 425 169 90 0 chr13 21496179 21496268 -80376901 - MLT1L LTR MaLR -12 603 507 208 202 170 43 chr13 21496295 21496389 -80376780 + MIR SINE MIR 157 262 0 24 32 0 0 chr13 21496533 21496564 -80376605 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 21496775 21496798 -80376371 + AT_rich Low_complexity Low_complexity 1 23 0 217 132 0 0 chr13 21499103 21499141 -80374028 + (T)n Simple_repeat Simple_repeat 1 38 0 689 80 0 0 chr13 21499165 21499253 -80373916 - AluSc SINE Alu -116 193 106 1662 178 60 21 chr13 21499790 21500122 -80373047 + MER7A DNA MER2_type 2 344 -2 290 301 97 57 chr13 21500215 21500391 -80372778 - MER5A DNA MER1_type -4 185 3 5176 59 23 13 chr13 21500551 21501242 -80371927 + SVA Other Other 688 1385 -1 21 0 0 0 chr13 21502792 21502813 -80370356 + AT_rich Low_complexity Low_complexity 1 21 0 330 284 113 28 chr13 21503222 21503363 -80369806 - MIR SINE MIR -25 237 85 28 0 0 0 chr13 21504405 21504433 -80368736 + AT_rich Low_complexity Low_complexity 1 28 0 1769 157 193 0 chr13 21504689 21505052 -80368117 - Tigger2a DNA MER2_type -1 433 1 1782 117 79 41 chr13 21506103 21506444 -80366725 - HSMAR2 DNA Mariner -1 1301 948 7206 193 16 14 chr13 21506444 21508032 -80365137 - L1 LINE L1 -1435 4711 3121 6353 136 8 10 chr13 21508033 21509446 -80363723 + L1PB1 LINE L1 4747 6150 -1 6098 141 8 1 chr13 21509456 21510413 -80362756 - HSMAR2 DNA Mariner -337 965 2 1041 205 5 38 chr13 21510442 21510652 -80362517 - AluJo SINE Alu -25 287 85 367 292 52 36 chr13 21511137 21511329 -80361840 - MIR SINE MIR -57 205 11 2239 204 87 59 chr13 21511576 21511902 -80361267 + LTR8A LTR ERV1 34 349 -378 202 28 28 28 chr13 21511902 21511938 -80361231 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2239 204 87 59 chr13 21511938 21512286 -80360883 + LTR8A LTR ERV1 349 727 0 23 0 0 0 chr13 21512470 21512493 -80360676 + AT_rich Low_complexity Low_complexity 1 23 0 652 232 0 0 chr13 21512520 21512658 -80360511 - FLAM_C SINE Alu -3 140 3 2017 224 54 6 chr13 21513018 21513555 -80359614 + L1M4 LINE L1 3629 4191 -1955 1425 186 12 81 chr13 21514123 21514456 -80358713 - MLT1B LTR MaLR -15 375 66 214 295 211 21 chr13 21515658 21515848 -80357321 - MIR SINE MIR -6 256 31 1447 221 28 36 chr13 21516004 21516361 -80356808 - MLT1A1 LTR MaLR -11 354 1 1303 133 0 84 chr13 21516396 21516645 -80356524 - AluJo SINE Alu 0 312 85 873 230 119 13 chr13 21517248 21517474 -80355695 - MIR SINE MIR -1 261 12 857 219 16 65 chr13 21517962 21518208 -80354961 - MLT1A1 LTR MaLR -5 360 127 206 290 187 9 chr13 21519142 21519249 -80353920 + L2 LINE L2 3139 3264 -8 229 238 262 0 chr13 21519542 21519626 -80353543 - LTR24B LTR ERV1 -7 569 464 528 152 20 20 chr13 21519838 21519937 -80353232 - LTR24B LTR ERV1 -474 102 4 192 165 0 35 chr13 21519948 21520033 -80353136 + (CATTT)n Simple_repeat Simple_repeat 2 83 0 260 189 0 28 chr13 21520068 21520211 -80352958 + (CATTT)n Simple_repeat Simple_repeat 2 140 0 252 246 0 29 chr13 21520223 21520361 -80352808 + T-rich Low_complexity Low_complexity 3 136 0 830 269 56 41 chr13 21520410 21520752 -80352417 + L1ME LINE L1 5412 5758 -363 21 0 0 0 chr13 21520848 21520869 -80352300 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 21520899 21520936 -80352233 + AT_rich Low_complexity Low_complexity 1 37 0 2599 314 89 16 chr13 21521522 21522961 -80350208 - L2 LINE L2 0 3313 1767 4445 177 34 26 chr13 21523122 21524329 -80348840 - L1MB2 LINE L1 -2 6885 5672 2246 109 0 3 chr13 21524329 21524641 -80348528 - AluSx SINE Alu -1 311 1 4445 177 34 26 chr13 21524641 21524738 -80348431 - L1MB2 LINE L1 -1215 5672 5577 299 259 47 12 chr13 21525439 21525524 -80347645 - MIR SINE MIR 0 262 175 6475 164 49 20 chr13 21526140 21529704 -80343465 - L1MB2 LINE L1 -3091 3771 1 842 136 28 51 chr13 21529696 21529873 -80343296 - L1P LINE L1 -966 5180 5008 * 333 319 68 43 chr13 21530181 21530344 -80342825 + MIR SINE MIR 20 186 -76 223 271 0 0 chr13 21530355 21530414 -80342755 + GA-rich Low_complexity Low_complexity 3 61 0 30 0 0 0 chr13 21530487 21530517 -80342652 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr13 21530533 21530580 -80342589 + AT_rich Low_complexity Low_complexity 1 47 0 527 114 13 0 chr13 21530606 21530685 -80342484 + MADE1 DNA Mariner 1 80 0 379 313 122 26 chr13 21531140 21531370 -80341799 + MIR SINE MIR 2 253 -9 657 210 64 56 chr13 21531656 21531889 -80341280 - MER106A DNA MER1_type -1 235 1 608 144 0 0 chr13 21531981 21532099 -80341070 - AluSg/x SINE Alu 0 308 191 1914 146 7 0 chr13 21532099 21532469 -80340700 + L1PA11 LINE L1 1971 2353 -4444 6227 98 19 0 chr13 21532469 21534102 -80339067 + L1PA11 LINE L1 5152 6823 -2 246 105 0 0 chr13 21534140 21534178 -80338991 + (TAAAA)n Simple_repeat Simple_repeat 5 42 0 2261 95 0 3 chr13 21534552 21534846 -80338323 + AluSp SINE Alu 1 293 -20 204 333 54 27 chr13 21535635 21535746 -80337423 - L2 LINE L2 -5 3308 3195 1043 115 25 0 chr13 21535930 21536087 -80337082 + AluSg/x SINE Alu 136 296 -16 246 32 0 0 chr13 21536091 21536122 -80337047 + (CAA)n Simple_repeat Simple_repeat 2 32 0 2297 85 7 0 chr13 21536220 21536527 -80336642 + AluSc SINE Alu 1 309 0 746 348 0 0 chr13 21536614 21536835 -80336334 - MIR SINE MIR -30 232 12 4221 246 38 65 chr13 21537154 21538795 -80334374 + L1M3 LINE L1 19 1615 -4927 613 212 15 7 chr13 21538796 21538933 -80334236 + FRAM SINE Alu 1 132 -44 707 168 8 8 chr13 21538961 21539086 -80334083 - FLAM_C SINE Alu -18 125 1 1016 231 15 26 chr13 21539086 21539350 -80333819 + L1M3 LINE L1 4113 4373 -2271 * 1593 258 56 21 chr13 21539345 21539919 -80333250 + L1M3 LINE L1 4940 5533 -1111 563 147 44 118 chr13 21539930 21540048 -80333121 + L1M3 LINE L1 5753 5851 -827 614 183 0 70 chr13 21540048 21540190 -80332979 + FLAM_C SINE Alu 1 132 -1 563 147 44 118 chr13 21540190 21540275 -80332894 + L1M3 LINE L1 5851 5941 -737 24 0 0 0 chr13 21540378 21540402 -80332767 + AT_rich Low_complexity Low_complexity 1 24 0 2102 91 18 0 chr13 21540588 21540887 -80332282 - AluSq SINE Alu 0 307 4 2394 71 3 0 chr13 21540964 21541261 -80331908 - AluSp SINE Alu -15 298 1 184 361 14 0 chr13 21541511 21541583 -80331586 + L2 LINE L2 3185 3257 -15 595 257 209 26 chr13 21541784 21542095 -80331074 + LTR16C LTR ERVL 36 403 -88 21 36 0 0 chr13 21542181 21542209 -80330960 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr13 21543775 21543808 -80329361 + AT_rich Low_complexity Low_complexity 1 33 0 2797 0 0 3 chr13 21543860 21544168 -80329001 + AluYa5 SINE Alu 1 307 -4 21 0 0 0 chr13 21544314 21544335 -80328834 + AT_rich Low_complexity Low_complexity 1 21 0 1625 142 16 84 chr13 21545253 21545564 -80327605 + AluSx SINE Alu 1 290 -22 23 68 0 0 chr13 21546295 21546339 -80326830 + AT_rich Low_complexity Low_complexity 1 44 0 811 266 175 47 chr13 21547497 21547948 -80325221 - MLT1J LTR MaLR -2 509 1 795 235 16 11 chr13 21548999 21549186 -80323983 - MER5A DNA MER1_type 0 189 2 2298 84 0 3 chr13 21549763 21550060 -80323109 + AluSg SINE Alu 2 297 -13 199 355 25 25 chr13 21551151 21551272 -80321897 - L2 LINE L2 -339 2933 2813 244 286 76 8 chr13 21551606 21551725 -80321444 - LTR33A LTR ERVL -2 521 395 282 116 0 0 chr13 21551885 21551928 -80321241 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1813 339 75 24 chr13 21552548 21553679 -80319490 - HERVL LTR ERVL -293 5361 4173 600 297 78 14 chr13 21553678 21553897 -80319272 - HERVL LTR ERVL -2553 3211 2979 * 753 310 115 38 chr13 21553999 21554914 -80318255 - HERVL LTR ERVL -2779 2875 1919 295 191 16 0 chr13 21556791 21556854 -80316315 - L1ME LINE L1 -253 5868 5805 337 198 49 25 chr13 21557127 21557208 -80315961 + L2 LINE L2 3227 3309 -4 210 330 45 23 chr13 21557293 21557381 -80315788 - MIR SINE MIR -102 106 17 25 51 0 0 chr13 21557458 21557497 -80315672 + AT_rich Low_complexity Low_complexity 1 39 0 391 257 5 102 chr13 21557762 21557949 -80315220 + L1ME LINE L1 1201 1369 -5578 2394 70 0 0 chr13 21558039 21558340 -80314829 - AluY SINE Alu -10 301 1 544 328 48 34 chr13 21558542 21559350 -80313819 + L1ME LINE L1 1331 2323 -4815 180 0 0 0 chr13 21559762 21559782 -80313387 + (A)n Simple_repeat Simple_repeat 1 20 0 841 294 70 46 chr13 21560165 21560733 -80312436 + L1ME3 LINE L1 393 974 -5096 * 2480 262 75 29 chr13 21560722 21560995 -80312174 + L1ME3 LINE L1 3812 4071 -2009 342 98 0 0 chr13 21560995 21561046 -80312123 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2480 262 75 29 chr13 21561046 21561926 -80311243 + L1ME3 LINE L1 4071 5018 -1062 329 298 13 13 chr13 21562052 21562210 -80310959 + L1ME3 LINE L1 5001 5158 -922 1291 229 108 25 chr13 21562236 21562745 -80310424 + L1ME3 LINE L1 5247 5794 -306 411 233 20 100 chr13 21562865 21563015 -80310154 + L1ME3 LINE L1 5838 5975 -121 33 66 0 0 chr13 21563015 21563076 -80310093 + AT_rich Low_complexity Low_complexity 1 61 0 25 65 0 0 chr13 21563137 21563183 -80309986 + AT_rich Low_complexity Low_complexity 1 46 0 235 175 16 63 chr13 21563342 21563405 -80309764 + MIR SINE MIR 154 213 -49 25 0 0 0 chr13 21564821 21564846 -80308323 + AT_rich Low_complexity Low_complexity 1 25 0 369 280 37 0 chr13 21564846 21564953 -80308216 + MIR SINE MIR 141 251 -11 1500 164 41 11 chr13 21565092 21565361 -80307808 - AluJo SINE Alu -35 277 1 2780 153 40 17 chr13 21565734 21566265 -80306904 + L1MC1 LINE L1 5780 6322 -11 1039 46 8 0 chr13 21566942 21567072 -80306097 - AluY SINE Alu -8 303 173 650 198 95 107 chr13 21567299 21567542 -80305627 + MER57B LTR ERV1 1 269 -163 2493 148 8 0 chr13 21567587 21567980 -80305189 - MER57A LTR ERV1 0 403 8 586 151 49 15 chr13 21567982 21568166 -80305003 - MER57A-int LTR ERV1 0 7537 7277 731 129 26 0 chr13 21568175 21568291 -80304878 - LTR54B LTR ERV1 -377 121 3 1916 151 14 0 chr13 21568305 21568584 -80304585 + AluSx SINE Alu 1 283 -29 7453 167 13 10 chr13 21568584 21569874 -80303295 - MER57A-int LTR ERV1 -419 7118 5825 6335 158 10 28 chr13 21570169 21570579 -80302590 - MER57A-int LTR ERV1 -1688 5849 5433 2366 85 0 0 chr13 21570579 21570874 -80302295 - AluSg SINE Alu -15 295 1 6335 158 10 28 chr13 21570874 21571630 -80301539 - MER57A-int LTR ERV1 -2104 5433 4704 603 62 0 0 chr13 21571630 21571710 -80301459 + AluSg/x SINE Alu 217 296 -13 369 143 0 14 chr13 21571799 21571869 -80301300 + LTR23-int LTR ERV1 951 1019 -4104 2011 171 56 107 chr13 21571875 21572711 -80300458 - MER57A-int LTR ERV1 -2151 4180 1548 373 231 64 39 chr13 21572711 21572914 -80300255 - MER57A-int LTR ERV1 -3023 1913 1706 779 151 19 159 chr13 21573027 21573285 -80299884 - MER57A-int LTR ERV1 -2879 3452 3231 383 242 55 35 chr13 21573428 21573688 -80299481 - MER57A-int LTR ERV1 -3659 1978 1097 331 133 33 0 chr13 21573733 21573793 -80299376 - MER34C LTR ERV1 -369 216 155 2427 71 0 0 chr13 21573918 21574229 -80298940 - AluY SINE Alu 0 311 1 3975 203 13 31 chr13 21574346 21575204 -80297965 - MER57A-int LTR ERV1 -6695 842 1 605 193 0 0 chr13 21575204 21575313 -80297856 - MER57A LTR ERV1 0 403 295 1070 124 16 38 chr13 21575326 21575511 -80297658 - MER61A LTR ERV1 -1 342 162 408 83 0 12 chr13 21575632 21575751 -80297418 - MER61A LTR ERV1 -190 153 3 349 217 0 0 chr13 21575751 21575819 -80297350 + AluJ/FRAM SINE Alu 234 301 -1 959 294 22 45 chr13 21575851 21576521 -80296648 + MER57-int LTR ERV1 2357 6179 -1358 248 265 172 37 chr13 21577364 21577579 -80295590 + HAL1b LINE L1 1049 1292 -56 406 323 16 8 chr13 21579140 21579264 -80293905 + MIR SINE MIR 23 147 -115 6126 69 1 0 chr13 21581035 21581827 -80291342 - L1PA7 LINE L1 -7 6147 5355 * 8567 77 25 35 chr13 21581825 21583120 -80290049 + L1PA7 LINE L1 4073 5354 -792 2279 190 50 0 chr13 21584243 21584743 -80288426 - L1MB3 LINE L1 0 6183 5659 1574 163 0 83 chr13 21584839 21585176 -80287993 + AluJo SINE Alu 1 309 -3 21 36 0 0 chr13 21585196 21585224 -80287945 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 21585243 21585271 -80287898 + AT_rich Low_complexity Low_complexity 1 28 0 299 378 65 29 chr13 21585410 21585685 -80287484 - L2 LINE L2 -181 3091 2807 244 333 26 51 chr13 21587163 21587210 -80285959 + L2 LINE L2 3121 3168 -104 1654 219 22 3 chr13 21587210 21587566 -80285603 - MLT1A1 LTR MaLR 0 365 3 244 333 26 51 chr13 21587566 21587674 -80285495 + L2 LINE L2 3168 3272 0 2264 247 30 35 chr13 21587721 21588324 -80284845 - MER90 LTR ERV1 -14 600 1 200 296 99 25 chr13 21589286 21589367 -80283802 - L2 LINE L2 0 3272 3186 1142 174 13 49 chr13 21589456 21589520 -80283649 - MLT1D LTR MaLR -3 502 437 1854 142 0 0 chr13 21589520 21589794 -80283375 + AluSx SINE Alu 17 290 -22 1142 174 13 49 chr13 21589794 21589953 -80283216 - MLT1D LTR MaLR -68 437 287 5639 190 66 15 chr13 21590001 21591983 -80281186 - L1MC1 LINE L1 0 6333 4243 616 142 14 170 chr13 21592048 21592260 -80280909 - MLT1D LTR MaLR -446 180 2 256 397 17 9 chr13 21592821 21592937 -80280232 + L2 LINE L2 3154 3270 -2 752 284 96 11 chr13 21593582 21593864 -80279305 + L2 LINE L2 2534 2839 -475 667 163 8 0 chr13 21594870 21594993 -80278176 - L1MB8 LINE L1 -2 6176 6053 2268 102 3 0 chr13 21594993 21595298 -80277871 - AluSq SINE Alu -7 306 1 2283 225 90 21 chr13 21595299 21596369 -80276800 - L1ME1 LINE L1 -201 5965 4813 803 115 0 0 chr13 21596369 21596482 -80276687 - AluJb SINE Alu -197 115 3 753 212 45 20 chr13 21596482 21596680 -80276489 - L1ME1 LINE L1 -1327 4819 4617 380 294 183 0 chr13 21597641 21597767 -80275402 - MER5A DNA MER1_type 0 189 41 233 346 77 6 chr13 21598150 21598332 -80274837 - L1MC1 LINE L1 -1897 4249 4055 224 151 0 19 chr13 21598393 21598446 -80274723 + CT-rich Low_complexity Low_complexity 1 52 0 192 125 0 0 chr13 21598457 21598489 -80274680 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 1188 262 19 32 chr13 21598722 21599096 -80274073 - L1ME1 LINE L1 -4 6162 5794 240 91 5 0 chr13 21599292 21599339 -80273830 - L1M4 LINE L1 -1136 5010 4963 215 149 64 0 chr13 21599621 21599668 -80273501 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr13 21600408 21600430 -80272739 + AT_rich Low_complexity Low_complexity 1 22 0 238 303 138 0 chr13 21600970 21601115 -80272054 + MLT1J2 LTR MaLR 45 209 -241 893 127 0 8 chr13 21601319 21601453 -80271716 - AluSq/x SINE Alu -180 133 1 1912 111 37 20 chr13 21602143 21602441 -80270728 + AluSq SINE Alu 1 303 -10 232 350 26 8 chr13 21603558 21603675 -80269494 - L2 LINE L2 -1 3312 3194 208 163 23 0 chr13 21603789 21603832 -80269337 + CT-rich Low_complexity Low_complexity 1 44 0 324 257 0 29 chr13 21603864 21603934 -80269235 + MIR SINE MIR 31 98 -164 1541 288 52 16 chr13 21603960 21604534 -80268635 + MLT1H1 LTR MaLR 6 555 0 3833 145 107 116 chr13 21604541 21605887 -80267282 + pTR5 LTR ERV1 743 2397 -41 351 336 29 72 chr13 21606152 21606360 -80266809 - L3 LINE CR1 -18 1559 1361 241 318 0 0 chr13 21607348 21607411 -80265758 + MIR SINE MIR 89 151 -57 5980 107 23 2 chr13 21607842 21608964 -80264205 + L1PA13 LINE L1 5017 6153 -10 588 331 0 0 chr13 21609155 21609318 -80263851 - L2 LINE L2 -962 2352 2190 627 320 184 35 chr13 21609474 21609984 -80263185 - L2 LINE L2 -1926 1388 803 1963 142 0 25 chr13 21610004 21610320 -80262849 + AluSq SINE Alu 1 308 -5 341 318 85 23 chr13 21611162 21611338 -80261831 - L1MC5 LINE L1 -48 7913 7727 2473 196 20 2 chr13 21611523 21612029 -80261140 - L1MD1 LINE L1 0 6242 5728 1238 292 12 8 chr13 21612135 21612614 -80260555 - L1MDa LINE L1 -2533 4007 3527 6924 209 108 87 chr13 21612674 21613787 -80259382 - L1MDa LINE L1 -3687 2853 1765 1022 158 25 0 chr13 21613787 21613945 -80259224 - FRAM SINE Alu -15 161 1 6924 209 108 87 chr13 21613945 21615428 -80257741 - L1MDa LINE L1 -4775 1765 26 26 30 0 0 chr13 21616620 21616653 -80256516 + AT_rich Low_complexity Low_complexity 1 33 0 939 297 45 3 chr13 21618751 21619105 -80254064 - L1M4 LINE L1 -1031 5115 4747 347 172 0 0 chr13 21619111 21619169 -80254000 + Tigger1 DNA MER2_type 1 58 -2360 206 200 0 0 chr13 21619172 21619207 -80253962 + polypyrimidine Low_complexity Low_complexity 2 36 0 497 250 0 9 chr13 21619214 21619326 -80253843 + Tigger1 DNA MER2_type 1028 1138 -1280 7570 163 38 8 chr13 21619327 21620657 -80252512 + Tigger1 DNA MER2_type 67 1436 -982 4502 136 33 11 chr13 21620641 21621391 -80251778 + Tigger1 DNA MER2_type 1652 2418 0 * 845 258 46 27 chr13 21621397 21621769 -80251400 - L1M4 LINE L1 -1410 4736 4358 * 2658 265 93 94 chr13 21621752 21622132 -80251037 - L1MEc LINE L1 -4260 2136 1757 2303 218 92 19 chr13 21622132 21622773 -80250396 - MER76 LTR ERV 0 688 1 2658 265 93 94 chr13 21622773 21623681 -80249488 - L1MEc LINE L1 -4639 1757 850 1319 151 75 86 chr13 21623681 21623973 -80249196 - AluSx SINE Alu -23 289 1 2658 265 93 94 chr13 21623973 21624778 -80248391 - L1MEc LINE L1 -5546 850 45 251 337 10 10 chr13 21675005 21675103 -80198066 - MLT1A2 LTR MaLR -91 283 186 22 0 0 0 chr13 21675543 21675565 -80197604 + AT_rich Low_complexity Low_complexity 1 22 0 1818 142 0 51 chr13 21676327 21676653 -80196516 - AluSx SINE Alu 0 313 3 1078 155 225 5 chr13 21676757 21677098 -80196071 + MSTB1 LTR MaLR 1 457 0 1045 160 0 0 chr13 21677245 21677414 -80195755 + FRAM SINE Alu 1 168 -8 854 111 8 0 chr13 21677481 21677607 -80195562 + L1PA15 LINE L1 5828 5954 -211 2757 95 21 37 chr13 21677607 21677661 -80195508 - MLT2A1 LTR ERVL 0 444 391 403 33 33 0 chr13 21677661 21677722 -80195447 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2757 95 21 37 chr13 21677722 21678098 -80195071 - MLT2A1 LTR ERVL -53 391 21 1163 174 9 5 chr13 21678102 21678320 -80194849 + L1PA15 LINE L1 5947 6165 0 1219 184 4 4 chr13 21679789 21680023 -80193146 - L1PA16 LINE L1 -5 6161 5928 1184 280 88 34 chr13 21680176 21680685 -80192484 - L2 LINE L2 0 3313 2787 203 340 113 14 chr13 21680787 21680928 -80192241 - L2 LINE L2 0 3313 3159 2049 129 10 0 chr13 21681058 21681352 -80191817 + AluSx SINE Alu 2 298 -14 749 288 52 9 chr13 21681434 21681663 -80191506 - MIR SINE MIR -10 252 14 23 0 0 0 chr13 21682609 21682632 -80190537 + AT_rich Low_complexity Low_complexity 1 23 0 378 0 0 0 chr13 21682647 21682689 -80190480 + (TG)n Simple_repeat Simple_repeat 2 43 0 595 271 34 83 chr13 21682843 21683109 -80190060 + MIR SINE MIR 10 262 0 1710 136 73 17 chr13 21683547 21683848 -80189321 - THE1C LTR MaLR -55 320 3 22 0 0 0 chr13 21684340 21684362 -80188807 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr13 21684466 21684496 -80188673 + (A)n Simple_repeat Simple_repeat 1 30 0 700 196 8 8 chr13 21684731 21684864 -80188305 - FLAM_A SINE Alu 0 133 1 228 310 15 31 chr13 21685184 21685310 -80187859 + MIR SINE MIR 5 131 -77 515 312 13 13 chr13 21685339 21685496 -80187673 + MIR SINE MIR 12 168 -94 6947 134 39 20 chr13 21686585 21686630 -80186539 + Tigger3b DNA MER2_type 1 44 -2984 2055 117 0 0 chr13 21686630 21686943 -80186226 + AluSc SINE Alu 1 313 0 6947 134 39 20 chr13 21686943 21688090 -80185079 + Tigger3b DNA MER2_type 44 1217 -14 505 325 32 30 chr13 21688946 21689166 -80184003 - MIR SINE MIR -16 246 28 6769 65 9 13 chr13 21690402 21691311 -80181858 - L1PA8 LINE L1 0 6172 5268 338 143 18 0 chr13 21691304 21691360 -80181809 + L1PA8 LINE L1 5206 5262 -884 * 307 242 0 15 chr13 21691704 21691770 -80181399 - L2 LINE L2 0 3313 3249 260 326 169 62 chr13 21692560 21692738 -80180431 + L2 LINE L2 3076 3272 0 1519 228 19 16 chr13 21693137 21693514 -80179655 - MLT1D LTR MaLR 0 505 128 288 291 19 0 chr13 21693542 21693645 -80179524 + L1MC4a LINE L1 4887 4991 -1155 1834 147 5 97 chr13 21693858 21694239 -80178930 - MER7A DNA MER2_type -1 345 2 1184 269 117 76 chr13 21694275 21695607 -80177562 + L1MC4a LINE L1 5319 6705 -1103 818 298 55 30 chr13 21695615 21696044 -80177125 - LTR16B LTR ERVL 0 464 1 342 237 26 0 chr13 21696047 21696123 -80177046 + L1MC4 LINE L1 6799 6876 -1166 5025 144 27 2 chr13 21696134 21697324 -80175845 + L1PA16 LINE L1 4954 6165 -1 21 57 0 0 chr13 21697361 21697396 -80175773 + AT_rich Low_complexity Low_complexity 1 35 0 2002 130 3 0 chr13 21697398 21697691 -80175478 + AluSp SINE Alu 1 294 -19 27 0 0 0 chr13 21697696 21697723 -80175446 + AT_rich Low_complexity Low_complexity 1 27 0 209 242 70 96 chr13 21697779 21697936 -80175233 + MIR3 SINE MIR 44 196 -12 303 241 69 11 chr13 21699078 21699165 -80174004 - L2 LINE L2 -32 3281 3190 220 262 14 83 chr13 21699165 21699310 -80173859 + L2 LINE L2 2372 2506 -808 2061 87 4 11 chr13 21699328 21699629 -80173540 - AluSx SINE Alu 0 305 7 214 270 32 0 chr13 21700424 21700487 -80172682 + L2 LINE L2 3207 3271 -1 660 332 59 59 chr13 21701678 21702172 -80170997 + L3 LINE CR1 1063 1556 -21 200 263 0 0 chr13 21703770 21703808 -80169361 + polypurine Low_complexity Low_complexity 6 43 0 271 238 75 116 chr13 21703957 21704104 -80169065 - MIR SINE MIR -22 240 100 22 80 0 0 chr13 21705048 21705098 -80168071 + AT_rich Low_complexity Low_complexity 1 50 0 399 273 136 26 chr13 21705566 21705720 -80167449 - L2 LINE L2 -5 3308 3138 277 358 22 15 chr13 21705739 21705873 -80167296 + MER115 DNA AcHobo 13 147 -546 2110 138 3 0 chr13 21706058 21706354 -80166815 - AluSq SINE Alu -16 297 1 339 219 64 11 chr13 21706363 21706525 -80166644 + LTR37A LTR ERV1 111 280 -188 201 226 0 0 chr13 21706548 21706601 -80166568 + (TA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 21706754 21706784 -80166385 + AT_rich Low_complexity Low_complexity 1 30 0 209 368 96 0 chr13 21706784 21706920 -80166249 - L2 LINE L2 -230 3083 2935 22 0 0 0 chr13 21707255 21707277 -80165892 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 21707406 21707428 -80165741 + AT_rich Low_complexity Low_complexity 1 22 0 609 215 23 8 chr13 21707509 21707639 -80165530 - MSTD LTR MaLR -1 395 264 503 219 29 0 chr13 21707697 21707799 -80165370 - MSTD LTR MaLR -244 152 48 1851 184 72 3 chr13 21707799 21708158 -80165011 + MSTA LTR MaLR 1 384 -44 567 179 0 0 chr13 21708158 21708242 -80164927 - AluS SINE Alu -227 85 2 1479 131 0 0 chr13 21708242 21708448 -80164721 + AluSg/x SINE Alu 83 288 -22 265 174 0 0 chr13 21708470 21708516 -80164653 + MSTA LTR MaLR 383 428 0 405 77 0 0 chr13 21708516 21708568 -80164601 - MSTD LTR MaLR -344 52 1 486 0 0 0 chr13 21709989 21710043 -80163126 + (TG)n Simple_repeat Simple_repeat 2 55 0 688 293 101 77 chr13 21710204 21710549 -80162620 - L2 LINE L2 -5 3308 2948 825 206 61 88 chr13 21710549 21710957 -80162212 + MLT2C1 LTR ERVL 1 397 0 688 293 101 77 chr13 21710957 21711068 -80162101 - L2 LINE L2 -365 2948 2841 393 239 11 0 chr13 21711093 21711181 -80161988 - L2 LINE L2 -990 2324 2236 1666 218 43 5 chr13 21712992 21713363 -80159806 - MLT1B LTR MaLR 0 390 6 877 152 18 0 chr13 21714081 21714246 -80158923 - L1MA6 LINE L1 0 6300 6133 900 179 28 9 chr13 21714400 21714612 -80158557 - L1MA7 LINE L1 -9 6282 6067 21 0 0 0 chr13 21715715 21715736 -80157433 + AT_rich Low_complexity Low_complexity 1 21 0 208 380 40 20 chr13 21715982 21716082 -80157087 - MIR3 SINE MIR -97 111 10 4175 161 150 79 chr13 21716837 21717400 -80155769 + L1MC3 LINE L1 6495 7016 -769 292 291 0 0 chr13 21717400 21717479 -80155690 + MLT1F1 LTR MaLR 46 124 -443 4175 161 150 79 chr13 21717479 21718027 -80155142 + L1MC3 LINE L1 7016 7769 -16 318 212 51 68 chr13 21718055 21718173 -80154996 - L1MC4 LINE L1 -1338 6704 6589 223 317 33 0 chr13 21718219 21718279 -80154890 + L2 LINE L2 3173 3234 -38 1805 163 3 29 chr13 21718281 21718587 -80154582 - AluJo SINE Alu -13 299 2 198 128 0 0 chr13 21719387 21719426 -80153743 + (TC)n Simple_repeat Simple_repeat 2 40 0 270 233 14 0 chr13 21720094 21720167 -80153002 + L1ME2 LINE L1 5821 5894 -280 474 261 0 65 chr13 21720256 21720394 -80152775 + L1ME2 LINE L1 5920 6048 -116 1008 172 20 0 chr13 21720407 21720610 -80152559 - L1MA8 LINE L1 -4 6287 6081 3095 170 37 35 chr13 21721722 21722001 -80151168 + L1MA8 LINE L1 5621 5898 -393 1879 186 37 127 chr13 21722001 21722673 -80150496 + LTR9 LTR ERV1 1 612 0 3095 170 37 35 chr13 21722673 21723041 -80150128 + L1MA8 LINE L1 5898 6269 -22 212 279 66 0 chr13 21723371 21723432 -80149737 - L2 LINE L2 0 3313 3249 256 111 95 48 chr13 21724180 21724243 -80148926 - MLT1J LTR MaLR -33 478 413 225 228 277 0 chr13 21724273 21724374 -80148795 - MLT1J LTR MaLR -380 131 3 1036 187 34 1 chr13 21724959 21725176 -80147993 + L1M3 LINE L1 5564 5791 -392 765 149 0 0 chr13 21725404 21725518 -80147651 + AluJo/FLAM SINE Alu 1 114 -198 710 200 40 0 chr13 21725512 21725662 -80147507 + AluSg/x SINE Alu 157 312 0 * 285 301 148 53 chr13 21727269 21727478 -80145691 + MIR SINE MIR 33 261 -1 23 0 0 0 chr13 21727482 21727505 -80145664 + AT_rich Low_complexity Low_complexity 1 23 0 467 342 54 19 chr13 21727934 21728194 -80144975 + L2 LINE L2 1733 2001 -1313 698 217 92 0 chr13 21728238 21728390 -80144779 + MER63A DNA MER1_type 1 166 -44 376 233 89 11 chr13 21728405 21728585 -80144584 + Zaphod DNA AcHobo 648 841 -3190 423 0 0 0 chr13 21728613 21728660 -80144509 + (TA)n Simple_repeat Simple_repeat 2 48 0 1860 159 0 23 chr13 21728660 21728961 -80144208 - AluSx SINE Alu -18 294 1 1571 197 60 26 chr13 21729088 21729179 -80143990 + Zaphod DNA AcHobo 3595 3681 -350 2397 72 0 0 chr13 21729179 21729470 -80143699 + AluSg SINE Alu 1 291 -19 1571 197 60 26 chr13 21729470 21729795 -80143374 + Zaphod DNA AcHobo 3681 4025 -6 408 351 81 11 chr13 21731070 21731355 -80141814 + L2 LINE L2 3005 3309 -4 327 238 12 12 chr13 21732040 21732120 -80141049 + L2 LINE L2 3186 3265 -7 2903 118 7 2 chr13 21733319 21733751 -80139418 + MER57B LTR ERV1 1 434 0 34 42 0 0 chr13 21734774 21734822 -80138347 + AT_rich Low_complexity Low_complexity 1 48 0 2226 276 151 28 chr13 21735456 21736181 -80136988 + HAL1 LINE L1 43 677 -1830 198 0 0 0 chr13 21736181 21736203 -80136966 + (CA)n Simple_repeat Simple_repeat 1 22 0 2226 276 151 28 chr13 21736203 21736924 -80136245 + HAL1 LINE L1 677 1668 -839 358 261 121 20 chr13 21736932 21737131 -80136038 + HAL1 LINE L1 2289 2507 0 475 252 8 8 chr13 21737901 21738020 -80135149 - MIR SINE MIR -24 238 120 2347 92 0 13 chr13 21738032 21738348 -80134821 - AluSx SINE Alu 0 312 1 841 201 98 0 chr13 21739159 21739343 -80133826 - MER3 DNA MER1_type 0 209 8 1791 152 51 0 chr13 21739611 21739887 -80133282 + AluSx SINE Alu 2 291 -21 1453 121 85 40 chr13 21740031 21740350 -80132819 - AluSq SINE Alu 0 331 1 2443 58 0 3 chr13 21740396 21740691 -80132478 + AluY SINE Alu 1 294 -17 182 375 18 0 chr13 21741330 21741386 -80131783 - L2 LINE L2 -90 3182 3126 292 253 115 11 chr13 21741485 21741572 -80131597 - L2 LINE L2 0 3313 3218 2323 96 7 0 chr13 21741851 21742154 -80131015 + AluY SINE Alu 6 310 -1 237 362 70 76 chr13 21742611 21742940 -80130229 - L2 LINE L2 0 3272 2946 23 33 0 0 chr13 21743001 21743031 -80130138 + AT_rich Low_complexity Low_complexity 1 30 0 379 309 33 0 chr13 21743466 21743618 -80129551 - L1ME1 LINE L1 -3 6163 6007 1502 210 10 10 chr13 21743956 21744261 -80128908 + AluJb SINE Alu 1 305 -7 345 24 0 0 chr13 21744395 21744437 -80128732 + (TG)n Simple_repeat Simple_repeat 2 43 0 1259 209 25 76 chr13 21745522 21745939 -80127230 + MLT2C1 LTR ERVL 1 662 -1 23 54 0 0 chr13 21746124 21746161 -80127008 + AT_rich Low_complexity Low_complexity 1 37 0 219 224 0 59 chr13 21746934 21747019 -80126150 + A-rich Low_complexity Low_complexity 4 83 0 29 47 0 0 chr13 21748381 21748424 -80124745 + AT_rich Low_complexity Low_complexity 1 43 0 466 337 10 45 chr13 21748453 21748655 -80124514 - MIR SINE MIR -66 196 2 3500 202 126 5 chr13 21748920 21749899 -80123270 - Charlie1a DNA MER1_type 0 1455 359 1150 234 70 32 chr13 21749918 21750234 -80122935 - Charlie1a DNA MER1_type -1126 329 2 537 125 0 11 chr13 21751528 21751638 -80121531 + AluY SINE Alu 213 311 0 1997 84 23 0 chr13 21752253 21752516 -80120653 + AluSc SINE Alu 26 294 -15 4132 207 34 13 chr13 21753194 21754098 -80119071 + MER49 LTR ERV1 1 923 0 267 366 94 14 chr13 21754829 21755042 -80118127 + L2 LINE L2 2139 2368 -946 201 74 0 0 chr13 21755077 21755104 -80118065 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1556 179 3 34 chr13 21755122 21755413 -80117756 - AluJb SINE Alu -30 282 1 342 194 0 0 chr13 21755508 21755580 -80117589 - MER116 DNA Mariner 0 80 9 29 28 0 0 chr13 21757772 21757808 -80115361 + AT_rich Low_complexity Low_complexity 1 36 0 246 105 0 0 chr13 21758474 21758512 -80114657 + (CA)n Simple_repeat Simple_repeat 1 38 0 441 110 0 0 chr13 21759164 21759237 -80113932 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 0 0 0 chr13 21759624 21759646 -80113523 + AT_rich Low_complexity Low_complexity 1 22 0 265 263 62 0 chr13 21760286 21760366 -80112803 - L2 LINE L2 0 3272 3188 284 309 27 34 chr13 21761145 21761294 -80111875 - L2 LINE L2 -1 3312 3165 315 0 0 0 chr13 21762184 21762219 -80110950 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 198 250 103 15 chr13 21762638 21762706 -80110463 - MIR SINE MIR -63 145 72 216 0 0 0 chr13 21762733 21762757 -80110412 + (A)n Simple_repeat Simple_repeat 1 24 0 2304 96 0 0 chr13 21763496 21763789 -80109380 - AluSc SINE Alu -16 293 1 1785 145 151 3 chr13 21764063 21764380 -80108789 + THE1B LTR MaLR 1 364 0 4762 116 59 0 chr13 21764380 21765138 -80108031 + THE1B-int LTR MaLR 1 803 -777 2664 183 2 48 chr13 21765130 21765390 -80107779 + L1MA7 LINE L1 5523 5794 -497 * 231 36 0 0 chr13 21765390 21765418 -80107751 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 2664 183 2 48 chr13 21765418 21765434 -80107735 + L1MA7 LINE L1 5794 5809 -482 378 0 0 0 chr13 21765434 21765476 -80107693 + (GA)n Simple_repeat Simple_repeat 1 42 0 2664 183 2 48 chr13 21765476 21765800 -80107369 + L1MA7 LINE L1 5809 6096 -195 1101 120 0 0 chr13 21765827 21766004 -80107165 - AluSg/x SINE Alu 0 308 132 701 133 107 0 chr13 21766071 21766221 -80106948 + L1MA9 LINE L1 6141 6306 -6 304 340 109 32 chr13 21766941 21767097 -80106072 + L2 LINE L2 3101 3268 -4 266 315 11 0 chr13 21767100 21767189 -80105980 + (TGGA)n Simple_repeat Simple_repeat 1 90 0 846 225 29 10 chr13 21767593 21767802 -80105367 - LTR16A1 LTR ERVL 0 457 245 337 289 88 0 chr13 21767885 21767999 -80105170 - LTR16A1 LTR ERVL -333 124 1 969 222 19 5 chr13 21768010 21768226 -80104943 - MER20 DNA MER1_type 0 219 1 252 296 0 0 chr13 21769179 21769233 -80103936 - L2 LINE L2 -3 3269 3216 21 36 0 0 chr13 21770076 21770104 -80103065 + AT_rich Low_complexity Low_complexity 1 28 0 2670 179 16 2 chr13 21770977 21771468 -80101701 + ERVL-B1 LTR ERVL 929 1426 -4338 * 4404 174 63 30 chr13 21771460 21772428 -80100741 + ERVL-B1 LTR ERVL 4758 5757 -7 1224 206 7 58 chr13 21772428 21772738 -80100431 + MLT2B1 LTR ERVL 1 294 -226 268 136 0 10 chr13 21772750 21772766 -80100403 + MLT2B3 LTR ERVL 459 474 -80 503 16 16 0 chr13 21772766 21772830 -80100339 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 268 136 0 10 chr13 21772830 21772872 -80100297 + MLT2B3 LTR ERVL 474 554 0 22 35 0 0 chr13 21772940 21772969 -80100200 + AT_rich Low_complexity Low_complexity 1 29 0 264 219 27 27 chr13 21773189 21773262 -80099907 - MIR SINE MIR -120 142 70 1430 81 0 0 chr13 21773375 21773549 -80099620 - AluSq SINE Alu -6 307 134 1922 143 24 8 chr13 21774080 21774424 -80098745 - MER7A DNA MER2_type -1 345 2 276 30 0 0 chr13 21774676 21774709 -80098460 + (TA)n Simple_repeat Simple_repeat 1 33 0 2143 103 0 10 chr13 21774710 21775002 -80098167 - AluSq SINE Alu -24 289 1 357 326 47 17 chr13 21775021 21775193 -80097976 - L1ME LINE L1 -343 5778 5602 195 338 73 0 chr13 21775971 21776039 -80097130 + MIR SINE MIR 3 75 -187 750 337 95 8 chr13 21776042 21776410 -80096759 + L3 LINE CR1 1084 1483 -94 2312 97 0 0 chr13 21777646 21777936 -80095233 + AluSc SINE Alu 1 290 -19 206 261 15 15 chr13 21778059 21778124 -80095045 + MIR SINE MIR 78 142 -120 373 248 91 16 chr13 21778599 21778720 -80094449 + LTR67 LTR ERVL 426 555 -2 204 270 79 0 chr13 21779174 21779237 -80093932 + MIR3 SINE MIR 104 171 -37 26 30 0 0 chr13 21780287 21780320 -80092849 + AT_rich Low_complexity Low_complexity 1 33 0 239 316 26 13 chr13 21780386 21780462 -80092707 - MIR3 SINE MIR -123 85 9 26 30 0 0 chr13 21780597 21780630 -80092539 + AT_rich Low_complexity Low_complexity 1 33 0 316 388 39 11 chr13 21780882 21781060 -80092109 - MIR3 SINE MIR -19 189 7 198 0 0 0 chr13 21781708 21781730 -80091439 + (A)n Simple_repeat Simple_repeat 1 22 0 28 29 0 0 chr13 21782520 21782555 -80090614 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 21784763 21784784 -80088385 + (CTG)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr13 21792631 21792663 -80080506 + AT_rich Low_complexity Low_complexity 1 32 0 534 168 131 9 chr13 21793358 21793465 -80079704 + FLAM_C SINE Alu 1 120 -23 2088 128 28 0 chr13 21794143 21794432 -80078737 - AluSx SINE Alu -15 297 1 460 374 52 0 chr13 21795376 21795550 -80077619 + MER91A DNA MER1_type 2 184 -12 282 190 51 63 chr13 21797951 21798030 -80075139 - MIR SINE MIR -108 154 77 693 166 0 22 chr13 21798316 21798455 -80074714 - L1PA13 LINE L1 -1 6162 6027 749 343 115 32 chr13 21801531 21802021 -80071148 - L2 LINE L2 -6 3266 2818 1700 139 72 31 chr13 21802021 21802380 -80070789 - THE1C LTR MaLR 0 375 2 749 343 115 32 chr13 21802380 21802763 -80070406 - L2 LINE L2 -454 2818 2321 596 255 34 68 chr13 21802820 21803055 -80070114 + MIR SINE MIR 10 236 -26 226 194 30 0 chr13 21803126 21803193 -80069976 + CT-rich Low_complexity Low_complexity 4 72 0 260 289 0 0 chr13 21805396 21805472 -80067697 + MIR SINE MIR 184 259 -3 444 227 101 25 chr13 21805474 21805593 -80067576 + L2 LINE L2 3185 3312 -1 2203 116 0 0 chr13 21805706 21806000 -80067169 + AluSx SINE Alu 3 296 -16 2055 131 0 0 chr13 21806088 21806392 -80066777 - AluSq SINE Alu 0 304 1 22 35 0 0 chr13 21806699 21806728 -80066441 + AT_rich Low_complexity Low_complexity 1 29 0 238 242 16 0 chr13 21806746 21806808 -80066361 + (TA)n Simple_repeat Simple_repeat 1 63 0 26 0 0 0 chr13 21806839 21806865 -80066304 + AT_rich Low_complexity Low_complexity 1 26 0 1722 141 36 16 chr13 21807194 21807319 -80065850 + AluSx SINE Alu 1 122 -190 459 0 0 0 chr13 21807319 21807370 -80065799 + (CA)n Simple_repeat Simple_repeat 2 52 0 1722 141 36 16 chr13 21807370 21807550 -80065619 + AluSx SINE Alu 122 312 0 193 301 72 0 chr13 21807953 21808036 -80065133 + L2 LINE L2 3221 3309 -4 1961 84 92 3 chr13 21809242 21809526 -80063643 - AluSg SINE Alu -1 309 1 300 158 0 0 chr13 21809926 21809983 -80063186 + CT-rich Low_complexity Low_complexity 2 58 0 378 74 0 0 chr13 21809983 21810037 -80063132 + (CA)n Simple_repeat Simple_repeat 1 54 0 440 289 30 48 chr13 21810552 21810718 -80062451 + MIR SINE MIR 28 190 -72 777 223 57 33 chr13 21811143 21811354 -80061815 + MER20 DNA MER1_type 1 216 -3 201 297 81 54 chr13 21811428 21811539 -80061630 + L2 LINE L2 3199 3312 -1 955 194 65 27 chr13 21811779 21812122 -80061047 + L1MA8 LINE L1 5982 6290 -1 2028 106 3 27 chr13 21812135 21812453 -80060716 + AluSq SINE Alu 1 311 0 21 36 0 0 chr13 21813217 21813245 -80059924 + AT_rich Low_complexity Low_complexity 1 28 0 1986 140 17 0 chr13 21813840 21814140 -80059029 - AluSx SINE Alu -7 305 1 439 296 62 12 chr13 21814318 21814480 -80058689 + L3 LINE CR1 1318 1487 -90 2200 116 0 0 chr13 21814745 21815039 -80058130 - AluSx SINE Alu -8 304 11 231 333 157 0 chr13 21816143 21816296 -80056873 - MIR SINE MIR -1 261 85 2138 191 21 50 chr13 21816298 21816564 -80056605 - MLT1D LTR MaLR -2 503 258 2190 107 0 0 chr13 21816564 21816853 -80056316 - AluSq SINE Alu -24 289 1 2138 191 21 50 chr13 21816853 21817104 -80056065 - MLT1D LTR MaLR -247 258 1 1242 61 12 0 chr13 21818343 21818507 -80054662 + L1PA10 LINE L1 6001 6166 -2 245 225 102 176 chr13 21819247 21819360 -80053809 + MER5B DNA MER1_type 6 101 -77 1296 133 45 166 chr13 21819360 21819692 -80053477 - AluJo SINE Alu -10 292 1 245 225 102 176 chr13 21819692 21819765 -80053404 + MER5B DNA MER1_type 101 178 0 645 181 194 12 chr13 21819861 21820021 -80053148 - MER5A DNA MER1_type 0 189 1 2114 125 3 13 chr13 21820281 21820593 -80052576 + AluSx SINE Alu 1 309 -3 586 206 121 0 chr13 21820973 21821114 -80052055 + MER105 DNA DNA 5 162 -42 739 241 60 19 chr13 21821125 21821341 -80051828 - MIR SINE MIR -36 226 2 241 353 0 0 chr13 21821671 21821756 -80051413 - MIR SINE MIR -131 131 47 452 364 57 53 chr13 21822511 21822986 -80050183 - L2 LINE L2 0 3313 2837 2564 205 16 23 chr13 21823286 21823848 -80049321 - MER74A LTR ERVL 0 558 1 1308 120 22 0 chr13 21824629 21824841 -80048328 + AluSg/x SINE Alu 95 310 0 373 289 67 0 chr13 21824905 21825009 -80048160 + L2 LINE L2 3200 3310 -3 1556 182 7 27 chr13 21825748 21826045 -80047124 - AluJb SINE Alu -21 291 1 272 170 259 82 chr13 21826111 21826160 -80047009 - MER103 DNA DNA 0 166 127 2008 74 4 0 chr13 21826160 21826428 -80046741 - AluSp SINE Alu 0 308 40 272 170 259 82 chr13 21826428 21826512 -80046657 - MER103 DNA DNA -39 127 8 233 264 66 75 chr13 21828804 21828910 -80044259 + MER94 DNA DNA 4 108 -26 298 282 103 0 chr13 21830759 21830876 -80042293 + MER112 DNA MER1_type 98 226 -34 219 36 0 0 chr13 21830996 21831024 -80042145 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 679 198 0 0 chr13 21831024 21831140 -80042029 - FLAM_C SINE Alu -27 116 1 200 163 0 20 chr13 21831499 21831548 -80041621 + A-rich Low_complexity Low_complexity 2 49 0 1418 171 54 54 chr13 21831815 21832071 -80041098 - Charlie1 DNA MER1_type 0 2761 2503 2289 108 0 3 chr13 21832071 21832378 -80040791 - AluSg SINE Alu -4 306 1 1418 171 54 54 chr13 21832378 21832513 -80040656 - Charlie1 DNA MER1_type -257 2504 2370 195 204 0 0 chr13 21834196 21834245 -80038924 + T-rich Low_complexity Low_complexity 1 49 0 477 339 99 66 chr13 21835068 21835616 -80037553 - L2 LINE L2 -434 2880 2294 2249 110 3 3 chr13 21835616 21835924 -80037245 + AluSx SINE Alu 1 308 -4 477 339 99 66 chr13 21835924 21836204 -80036965 - L2 LINE L2 -1020 2294 2025 607 320 30 17 chr13 21836209 21836443 -80036726 + MIR SINE MIR 17 253 -9 203 156 0 0 chr13 21836493 21836525 -80036644 + (CAT)n Simple_repeat Simple_repeat 2 33 0 225 343 145 14 chr13 21836573 21836780 -80036389 - L2 LINE L2 -1344 1970 1737 445 196 203 8 chr13 21838363 21838496 -80034673 - MIR SINE MIR -54 208 50 455 332 15 19 chr13 21839771 21840030 -80033139 - HAL1 LINE L1 -2203 304 47 222 180 0 0 chr13 21840617 21840678 -80032491 + (TA)n Simple_repeat Simple_repeat 1 61 0 189 274 264 19 chr13 21841115 21841221 -80031948 + L2 LINE L2 3141 3272 0 1251 161 32 0 chr13 21841536 21841753 -80031416 - AluJo SINE Alu -5 307 84 2272 84 0 3 chr13 21841812 21842124 -80031045 - AluSq SINE Alu 0 311 1 27 73 0 0 chr13 21842542 21842597 -80030572 + AT_rich Low_complexity Low_complexity 1 55 0 297 0 0 0 chr13 21844728 21844761 -80028408 + (TG)n Simple_repeat Simple_repeat 2 34 0 243 61 0 0 chr13 21844822 21844855 -80028314 + (CA)n Simple_repeat Simple_repeat 2 34 0 361 306 25 12 chr13 21845900 21846060 -80027109 - MER103 DNA DNA -1 165 4 818 143 15 170 chr13 21846853 21847112 -80026057 - MER20 DNA MER1_type 0 219 1 1147 96 28 11 chr13 21847502 21847679 -80025490 + THE1B LTR MaLR 1 180 -184 2072 148 42 10 chr13 21847683 21848024 -80025145 - L1MA4 LINE L1 -369 5931 5575 1862 131 4 15 chr13 21848024 21848298 -80024871 - AluSx SINE Alu -10 302 32 2072 148 42 10 chr13 21848298 21848342 -80024827 - L1MA4 LINE L1 -725 5575 5534 1579 171 0 4 chr13 21848369 21848649 -80024520 - L1M2 LINE L1 -549 5763 5485 297 0 0 0 chr13 21849197 21849230 -80023939 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 354 0 0 chr13 21849480 21849562 -80023607 + CT-rich Low_complexity Low_complexity 5 86 0 24 53 0 0 chr13 21849731 21849769 -80023400 + AT_rich Low_complexity Low_complexity 1 38 0 29 90 0 0 chr13 21850475 21850553 -80022616 + AT_rich Low_complexity Low_complexity 1 78 0 299 0 73 0 chr13 21851289 21851330 -80021839 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 405 0 0 0 chr13 21852191 21852236 -80020933 + (ATG)n Simple_repeat Simple_repeat 2 46 0 2226 104 0 0 chr13 21852253 21852533 -80020636 - AluSg SINE Alu -30 280 1 2409 188 104 38 chr13 21853523 21853857 -80019312 + MER82 DNA MER2_type 1 312 -341 2178 104 0 41 chr13 21853857 21854173 -80018996 - AluSx SINE Alu -9 303 1 2409 188 104 38 chr13 21854173 21854445 -80018724 + MER82 DNA MER2_type 312 647 -6 2045 128 24 0 chr13 21854924 21855220 -80017949 - AluSx SINE Alu -9 303 1 187 304 20 130 chr13 21855642 21855895 -80017274 + L2 LINE L2 2953 3177 -95 862 215 0 0 chr13 21856219 21856382 -80016787 + FRAM SINE Alu 1 163 -3 28 0 0 0 chr13 21858816 21858844 -80014325 + AT_rich Low_complexity Low_complexity 1 28 0 312 290 56 48 chr13 21859417 21859652 -80013517 - MIR3 SINE MIR -12 250 15 2274 87 17 0 chr13 21859778 21860067 -80013102 - AluSp SINE Alu -19 294 1 358 374 69 24 chr13 21860362 21860694 -80012475 - L1ME LINE L1 -449 5672 5326 22 56 0 0 chr13 21861788 21861824 -80011345 + AT_rich Low_complexity Low_complexity 1 36 0 2487 67 0 0 chr13 21862244 21862542 -80010627 - AluY SINE Alu -13 298 1 264 292 0 15 chr13 21864190 21864255 -80008914 - L2 LINE L2 0 3313 3250 320 246 200 9 chr13 21864351 21864461 -80008708 - MIR SINE MIR -130 132 2 215 336 28 9 chr13 21864480 21864587 -80008582 - MIR SINE MIR -148 114 6 517 254 8 8 chr13 21865335 21865453 -80007716 + L2 LINE L2 3196 3313 0 192 97 0 0 chr13 21865594 21865625 -80007544 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1728 154 29 4 chr13 21865629 21865909 -80007260 - AluJb SINE Alu -25 287 1 204 82 41 20 chr13 21867332 21867381 -80005788 + (TA)n Simple_repeat Simple_repeat 1 50 0 195 194 32 0 chr13 21867469 21867562 -80005607 + (TA)n Simple_repeat Simple_repeat 1 96 0 762 172 0 0 chr13 21867568 21867690 -80005479 - FLAM_C SINE Alu -21 122 1 189 107 0 0 chr13 21868191 21868219 -80004950 + (A)n Simple_repeat Simple_repeat 1 28 0 527 250 85 0 chr13 21918793 21918957 -79954212 + MER58B DNA MER1_type 153 330 -11 2318 103 0 0 chr13 21919009 21919301 -79953868 - AluSx SINE Alu -20 292 1 1701 202 98 7 chr13 21919302 21919753 -79953416 - Charlie1b DNA MER1_type -5 518 27 2189 108 13 22 chr13 21919765 21920080 -79953089 - AluSq SINE Alu -1 312 1 204 228 18 97 chr13 21920974 21921088 -79952081 + CT-rich Low_complexity Low_complexity 1 105 0 296 287 79 30 chr13 21921726 21921827 -79951342 + MIR SINE MIR 2 107 -155 2084 88 3 18 chr13 21922164 21922447 -79950722 + AluSx SINE Alu 2 280 -32 183 42 0 0 chr13 21922447 21922471 -79950698 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1436 42 6 0 chr13 21922471 21922637 -79950532 + AluSp SINE Alu 135 301 -12 2463 149 112 78 chr13 21923449 21923985 -79949184 - MLT2B3 LTR ERVL 0 554 1 505 275 163 0 chr13 21924255 21924415 -79948754 - MIR SINE MIR -2 260 75 268 257 0 40 chr13 21925371 21925445 -79947724 - L2 LINE L2 0 3313 3243 2367 175 37 2 chr13 21927954 21928411 -79944758 + L1MB8 LINE L1 5697 6169 -9 436 305 106 0 chr13 21929308 21929449 -79943720 + MIR3 SINE MIR 46 201 -7 324 277 69 5 chr13 21931702 21931836 -79941333 + MIR SINE MIR 2 157 -51 312 275 14 113 chr13 21933495 21933637 -79939532 + L2 LINE L2 3186 3313 0 1585 173 45 14 chr13 21934349 21934638 -79938531 + AluJo SINE Alu 1 298 -14 418 346 27 11 chr13 21934953 21935138 -79938031 + MIR SINE MIR 75 262 0 21 36 0 0 chr13 21935177 21935205 -79937964 + AT_rich Low_complexity Low_complexity 1 28 0 551 323 0 12 chr13 21935842 21936009 -79937160 + MIR3 SINE MIR 33 197 -11 279 203 0 0 chr13 21942280 21942339 -79930830 + (CATA)n Simple_repeat Simple_repeat 2 60 0 2255 93 0 7 chr13 21942355 21942644 -79930525 - AluSp SINE Alu -18 295 9 790 184 8 24 chr13 21943794 21943958 -79929211 - MER74A LTR ERVL -179 379 137 2456 194 69 12 chr13 21944166 21944671 -79928498 - MER74A LTR ERVL 0 558 25 284 312 0 0 chr13 21944859 21944936 -79928233 + MER63 DNA MER1_type 985 1061 -1 202 350 0 0 chr13 21944946 21945006 -79928163 - MER91A DNA MER1_type -118 78 19 220 254 68 0 chr13 21945974 21946033 -79927136 - MIR SINE MIR -41 221 159 3333 94 12 2 chr13 21946034 21946515 -79926654 + LTR19A LTR ERV1 1 486 0 2581 252 63 49 chr13 21947311 21948266 -79924903 + L1M4 LINE L1 2 969 -5573 2801 138 15 4 chr13 21949363 21949819 -79923350 - MER4C LTR ERV1 -4 461 1 2521 196 144 43 chr13 21949932 21950682 -79922487 + LTR1B LTR ERV1 1 826 0 378 314 36 23 chr13 21952234 21952454 -79920715 + L2 LINE L2 2051 2273 -1041 3168 127 231 11 chr13 21952458 21953180 -79919989 - Tigger3(Golem) DNA MER2_type -1 3028 2148 1171 196 82 86 chr13 21953209 21953894 -79919275 + LTR1B LTR ERV1 2 745 -81 237 68 23 0 chr13 21953999 21954043 -79919126 - Tigger3(Golem) DNA MER2_type -2706 323 279 1047 155 0 0 chr13 21954043 21954236 -79918933 - L1 LINE L1 -911 5235 5043 1564 143 8 0 chr13 21954236 21954501 -79918668 - Tigger3b DNA MER2_type -826 405 139 310 329 12 59 chr13 21954507 21954677 -79918492 + L2 LINE L2 3150 3311 -2 201 312 32 32 chr13 21954739 21954832 -79918337 - MIR3 SINE MIR -112 96 4 28 0 0 0 chr13 21956645 21956673 -79916496 + AT_rich Low_complexity Low_complexity 1 28 0 1577 199 48 3 chr13 21956866 21957157 -79916012 - AluSx SINE Alu -8 304 1 879 193 113 0 chr13 21957302 21957515 -79915654 + MSTD-int LTR MaLR 1499 1735 0 1254 228 94 32 chr13 21957515 21957888 -79915281 + MSTD LTR MaLR 1 396 0 737 169 16 0 chr13 21959238 21959362 -79913807 + AluJb SINE Alu 1 126 -186 325 242 78 33 chr13 21959562 21959715 -79913454 + L1M4 LINE L1 1457 1616 -5018 2519 47 0 0 chr13 21959772 21960072 -79913097 + AluY SINE Alu 1 300 -11 319 265 110 40 chr13 21960125 21960325 -79912844 + L1M4 LINE L1 1904 2117 -4708 267 152 80 24 chr13 21960328 21960453 -79912716 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 0 0 0 chr13 21960468 21960490 -79912679 + AT_rich Low_complexity Low_complexity 1 22 0 487 128 90 0 chr13 21960774 21960852 -79912317 + AluJb SINE Alu 85 169 -143 2056 174 30 123 chr13 21960852 21961511 -79911658 + LTR9 LTR ERV1 1 598 -14 839 168 0 0 chr13 21961519 21961650 -79911519 + AluJb SINE Alu 166 296 -16 305 260 10 0 chr13 21961662 21961762 -79911407 + L1M4 LINE L1 4390 4490 -2154 1430 226 57 65 chr13 21961856 21962361 -79910808 + MLT1E1 LTR MaLR 154 654 0 411 231 121 40 chr13 21962443 21962790 -79910379 + L1M4 LINE L1 4575 4949 -1695 303 248 165 8 chr13 21962836 21962957 -79910212 + L1M4 LINE L1 5016 5155 -1489 266 216 68 45 chr13 21963396 21963429 -79909740 + L1MC4 LINE L1 6447 6478 -1564 4264 154 61 12 chr13 21963429 21964253 -79908916 + MER6 DNA MER2_type 1 864 -1 266 216 68 45 chr13 21964253 21964307 -79908862 + L1MC4 LINE L1 6478 6536 -1506 3609 137 42 14 chr13 21964307 21964844 -79908325 + Tigger2 DNA MER2_type 2 564 -2154 2085 123 0 3 chr13 21964844 21965158 -79908011 - AluSq SINE Alu 0 313 1 3609 137 42 14 chr13 21965158 21965284 -79907885 + Tigger2 DNA MER2_type 564 685 -2033 270 182 68 45 chr13 21965338 21965426 -79907743 + L1MC4 LINE L1 7016 7105 -937 * 315 123 0 18 chr13 21965410 21965467 -79907702 + L1MC4a LINE L1 7163 7218 -590 274 262 0 48 chr13 21965468 21965571 -79907598 + L1MC4 LINE L1 7387 7484 -558 399 151 0 0 chr13 21965572 21965645 -79907524 + L1PA16 LINE L1 6072 6144 -22 520 233 70 0 chr13 21965656 21965828 -79907341 + L1MC4 LINE L1 7470 7653 -389 272 308 208 23 chr13 21966356 21966577 -79906592 - L2 LINE L2 -182 3090 2829 26 30 0 0 chr13 21967094 21967127 -79906042 + AT_rich Low_complexity Low_complexity 1 33 0 2276 110 0 0 chr13 21968990 21969289 -79903880 - AluSq SINE Alu -14 299 1 2129 114 3 10 chr13 21969815 21970105 -79903064 + AluSp SINE Alu 1 288 -25 195 42 0 0 chr13 21970105 21970129 -79903040 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 608 308 70 12 chr13 21970149 21970477 -79902692 - MER41E LTR ERV1 0 512 166 397 179 84 0 chr13 21971036 21971131 -79902038 + L1MA9 LINE L1 6173 6275 -37 183 219 98 0 chr13 21972717 21972758 -79900411 - L2 LINE L2 -2 3311 3267 319 322 153 6 chr13 21972835 21973018 -79900151 + MIR SINE MIR 47 256 -6 22 35 0 0 chr13 21973203 21973232 -79899937 + AT_rich Low_complexity Low_complexity 1 29 0 272 329 65 26 chr13 21973491 21973722 -79899447 + MIR SINE MIR 23 262 0 190 278 33 56 chr13 21975004 21975094 -79898075 - MIR SINE MIR -128 134 47 363 176 199 37 chr13 22025560 22025696 -79847473 + MER103 DNA DNA 2 159 -7 348 250 70 16 chr13 22025837 22025965 -79847204 - Charlie2a DNA MER1_type -1 2861 2727 516 233 100 0 chr13 22025987 22026137 -79847032 - Charlie2a DNA MER1_type -1224 1638 1474 226 246 0 18 chr13 22026207 22026264 -79846905 - Charlie2b DNA MER1_type -2109 673 618 1095 160 5 30 chr13 22026264 22026464 -79846705 - AluJo SINE Alu -117 195 1 239 138 155 35 chr13 22026469 22026527 -79846642 - Charlie2b DNA MER1_type -2158 624 560 434 259 117 19 chr13 22026584 22026746 -79846423 - Charlie2b DNA MER1_type -2640 222 45 604 170 236 0 chr13 22026805 22026970 -79846199 - MER3 DNA MER1_type 0 209 6 813 238 0 5 chr13 22027516 22027701 -79845468 - MER3 DNA MER1_type -25 184 1 2190 108 7 0 chr13 22028660 22028957 -79844212 - AluSq SINE Alu -14 299 1 186 219 98 0 chr13 22030317 22030358 -79842811 - L2 LINE L2 -2 3311 3267 317 322 153 6 chr13 22030435 22030618 -79842551 + MIR SINE MIR 47 256 -6 22 35 0 0 chr13 22030803 22030832 -79842337 + AT_rich Low_complexity Low_complexity 1 29 0 263 329 65 26 chr13 22031091 22031322 -79841847 + MIR SINE MIR 23 262 0 188 278 33 56 chr13 22032604 22032694 -79840475 - MIR SINE MIR -128 134 47 2358 53 0 41 chr13 22035631 22035950 -79837219 + AluY SINE Alu 1 306 -5 26 30 0 0 chr13 22038062 22038095 -79835074 + AT_rich Low_complexity Low_complexity 1 33 0 1275 211 127 42 chr13 22039004 22039430 -79833739 - MLT1C LTR MaLR 0 467 6 354 23 0 0 chr13 22039963 22040006 -79833163 + (TG)n Simple_repeat Simple_repeat 2 44 0 327 177 16 0 chr13 22041223 22041285 -79831884 - MIR SINE MIR -43 219 157 2303 46 42 7 chr13 22041786 22042071 -79831098 + AluY SINE Alu 2 296 -15 193 240 95 32 chr13 22042547 22042649 -79830520 + MIR SINE MIR 31 145 -63 296 340 35 40 chr13 22044150 22044350 -79828819 - L2 LINE L2 -98 3174 2976 204 158 0 0 chr13 22044567 22044605 -79828564 + T-rich Low_complexity Low_complexity 2 39 0 239 235 226 20 chr13 22045105 22045207 -79827962 + MIR SINE MIR 68 190 -72 441 65 0 0 chr13 22046275 22046337 -79826832 - Alu SINE Alu -7 304 243 1919 60 0 28 chr13 22046345 22046595 -79826574 - AluY SINE Alu -40 271 29 216 106 0 64 chr13 22047801 22047848 -79825321 + (TTTAA)n Simple_repeat Simple_repeat 3 46 0 278 336 161 27 chr13 22048361 22048584 -79824585 + L3 LINE CR1 869 1121 -456 2115 168 34 31 chr13 22048600 22049148 -79824021 + MLT2A2 LTR ERVL 1 554 0 255 252 221 38 chr13 22049196 22049327 -79823842 + L3 LINE CR1 1264 1418 -159 626 293 107 18 chr13 22049341 22049566 -79823603 + MIR SINE MIR 4 248 -14 383 305 103 53 chr13 22050006 22050383 -79822786 + MLT1J LTR MaLR 108 503 -8 246 161 43 65 chr13 22050648 22050741 -79822428 + (TTTAA)n Simple_repeat Simple_repeat 4 94 0 237 264 85 54 chr13 22050833 22050962 -79822207 - L1M4 LINE L1 -1999 4147 4015 3195 156 23 3 chr13 22051654 22052220 -79820949 - L1PA16 LINE L1 -8 7596 7020 1264 136 0 0 chr13 22052222 22052413 -79820756 + AluSc SINE Alu 115 305 -4 8305 196 23 10 chr13 22052414 22054598 -79818571 - L1PA16 LINE L1 -580 7024 4818 385 168 0 32 chr13 22054600 22054695 -79818474 + CT-rich Low_complexity Low_complexity 1 92 0 1180 193 9 9 chr13 22054731 22054944 -79818225 - AluSg/x SINE Alu -14 298 86 3007 232 35 148 chr13 22054944 22055790 -79817379 - L1PA16 LINE L1 -2754 4830 3889 331 21 0 0 chr13 22055790 22055838 -79817331 - AluSp/q SINE Alu 0 303 256 1111 112 7 0 chr13 22055838 22055990 -79817179 - AluSp SINE Alu -160 153 1 3007 232 35 148 chr13 22055990 22057080 -79816089 - L1PA16 LINE L1 -3693 3891 2938 1288 209 13 167 chr13 22057119 22057620 -79815549 - L1PA16 LINE L1 -4893 2681 2256 26 50 0 0 chr13 22057629 22057669 -79815500 + AT_rich Low_complexity Low_complexity 1 40 0 398 293 12 24 chr13 22058450 22058614 -79814555 - L1PA16 LINE L1 -5268 2306 2145 1249 312 58 28 chr13 22058642 22059209 -79813960 - L1PA16 LINE L1 -6203 1371 788 325 107 96 20 chr13 22059518 22059767 -79813402 + (TTATA)n Simple_repeat Simple_repeat 1 267 0 408 128 35 50 chr13 22059900 22060158 -79813011 + (TTATA)n Simple_repeat Simple_repeat 1 254 0 1765 167 19 19 chr13 22060588 22060900 -79812269 - AluJb SINE Alu 0 312 1 216 80 20 40 chr13 22061001 22061051 -79812118 + (CA)n Simple_repeat Simple_repeat 1 49 0 378 268 41 8 chr13 22061070 22061193 -79811976 + MIR SINE MIR 92 218 -44 451 306 113 21 chr13 22062259 22062569 -79810600 + L2 LINE L2 2664 2944 -369 840 264 4 51 chr13 22062569 22062666 -79810503 + MER58A DNA MER1_type 1 101 -2319 1967 164 3 16 chr13 22062666 22062976 -79810193 - AluJb SINE Alu -6 306 1 840 264 4 51 chr13 22062976 22063113 -79810056 + MER58A DNA MER1_type 101 224 0 451 306 113 21 chr13 22063113 22063234 -79809935 + L2 LINE L2 2944 3313 0 190 116 47 0 chr13 22063454 22063497 -79809672 + (TTATA)n Simple_repeat Simple_repeat 2 46 0 1364 182 0 0 chr13 22063622 22063847 -79809322 + AluSg/x SINE Alu 83 307 -3 1909 141 6 31 chr13 22065108 22065428 -79807741 - AluSx SINE Alu 0 312 1 2310 78 10 13 chr13 22065787 22066093 -79807076 - AluSx SINE Alu -7 305 1 236 310 54 39 chr13 22066118 22066247 -79806922 + L2 LINE L2 2190 2320 -994 2426 86 0 0 chr13 22066583 22066884 -79806285 + AluSc SINE Alu 1 301 -8 276 313 74 79 chr13 22067004 22067436 -79805733 - L1ME LINE L1 -424 5746 5317 11399 139 44 11 chr13 22067488 22069513 -79803656 - Tigger4(Zombi) DNA MER2_type 0 2731 640 1778 171 0 52 chr13 22069729 22070057 -79803112 + AluJb SINE Alu 1 311 -1 248 266 25 0 chr13 22070186 22070265 -79802904 - L1ME LINE L1 -1956 4190 4110 40870 30 21 6 chr13 22070371 22076429 -79796740 - L1PA2 LINE L1 -3 6152 3 407 285 80 45 chr13 22076486 22076798 -79796371 - L1ME LINE L1 -2203 3943 3621 3528 154 116 13 chr13 22076980 22077763 -79795406 + MER6 DNA MER2_type 2 865 0 2429 111 53 2 chr13 22077988 22078384 -79794785 + MER57B LTR ERV1 10 425 -9 211 322 33 25 chr13 22078776 22078897 -79794272 + L2 LINE L2 2736 2857 -457 207 349 96 12 chr13 22084607 22084690 -79788479 + L2 LINE L2 3144 3233 -39 562 313 71 5 chr13 22085791 22086002 -79787167 - MIR SINE MIR -31 231 7 324 378 0 9 chr13 22086210 22086321 -79786848 - MIR3 SINE MIR -96 112 3 396 0 0 0 chr13 22088024 22088068 -79785101 + (CA)n Simple_repeat Simple_repeat 2 45 0 410 312 95 30 chr13 22088253 22088484 -79784685 + HAL1b LINE L1 106 351 -997 211 247 72 82 chr13 22089052 22089149 -79784020 + MER5B DNA MER1_type 64 159 -19 229 291 13 0 chr13 22089395 22089474 -79783695 - HsTC2 DNA Tc2 -1811 87 8 766 294 44 11 chr13 22091601 22091876 -79781293 + L2 LINE L2 1025 1308 -2006 1167 151 5 10 chr13 22092340 22092539 -79780630 + MER2 DNA MER2_type 13 210 -135 204 152 196 0 chr13 22092577 22092623 -79780546 + L2 LINE L2 1382 1436 -1878 1691 245 106 4 chr13 22092851 22093333 -79779836 + MLT1F LTR MaLR 1 531 -11 343 231 162 0 chr13 22093363 22093480 -79779689 + MER103 DNA DNA 12 147 -19 194 268 169 0 chr13 22094271 22094342 -79778827 - L2 LINE L2 -63 3250 3168 331 250 58 48 chr13 22094432 22094536 -79778633 + L2 LINE L2 3208 3312 -1 214 267 48 0 chr13 22094554 22094659 -79778510 + (TA)n Simple_repeat Simple_repeat 2 111 0 548 227 105 6 chr13 22094749 22094921 -79778248 - L1ME LINE L1 -390 5731 5543 21 57 0 0 chr13 22095983 22096018 -79777151 + AT_rich Low_complexity Low_complexity 1 35 0 284 321 67 15 chr13 22096344 22096478 -79776691 - MIR SINE MIR -31 231 91 213 39 0 0 chr13 22096767 22096793 -79776376 + (A)n Simple_repeat Simple_repeat 1 26 0 659 191 76 0 chr13 22097120 22097277 -79775892 + MER3 DNA MER1_type 37 205 -4 4706 178 45 24 chr13 22097996 22099132 -79774037 - L1MB2 LINE L1 -1 6170 5059 1651 162 0 54 chr13 22099132 22099466 -79773703 - AluJb SINE Alu 0 318 1 4706 178 45 24 chr13 22099466 22099731 -79773438 - L1MB2 LINE L1 -1112 5059 4801 2093 138 3 13 chr13 22099731 22100043 -79773126 - AluSx SINE Alu -3 309 1 4706 178 45 24 chr13 22100043 22100524 -79772645 - L1MB2 LINE L1 -1370 4801 4237 372 22 0 0 chr13 22100524 22100569 -79772600 + (TG)n Simple_repeat Simple_repeat 2 46 0 4706 178 45 24 chr13 22100569 22100705 -79772464 - L1MB2 LINE L1 -1934 4237 4105 184 360 40 0 chr13 22101011 22101086 -79772083 - MIR3 SINE MIR -129 79 2 1879 141 59 3 chr13 22101135 22101425 -79771744 + AluSx SINE Alu 1 306 -6 392 338 48 0 chr13 22101865 22102010 -79771159 + L1ME LINE L1 5487 5638 -483 676 263 125 22 chr13 22102046 22102278 -79770891 - MIR SINE MIR 0 262 7 645 263 117 24 chr13 22102582 22102795 -79770374 - MIR SINE MIR 0 262 30 1867 142 43 43 chr13 22103014 22103388 -79769781 + THE1C LTR MaLR 1 374 -1 37 81 0 0 chr13 22103459 22103545 -79769624 + AT_rich Low_complexity Low_complexity 1 86 0 1046 310 60 8 chr13 22103613 22103978 -79769191 + L2 LINE L2 1993 2376 -938 915 98 21 0 chr13 22104156 22104299 -79768870 - MER2 DNA MER2_type -135 210 65 609 191 52 0 chr13 22104302 22104417 -79768752 - MER2 DNA MER2_type -224 121 1 638 257 130 36 chr13 22104420 22104696 -79768473 + L2 LINE L2 3005 3306 -7 246 220 17 0 chr13 22105464 22105523 -79767646 + MLT1D LTR MaLR 284 343 -162 712 233 57 25 chr13 22105529 22105808 -79767361 + L1MEc LINE L1 1542 1829 -4567 915 310 64 12 chr13 22105829 22106251 -79766918 + L1M2 LINE L1 3 446 -6403 1335 199 3 43 chr13 22106985 22107287 -79765882 + L1PA16 LINE L1 444 733 -6116 12116 227 30 12 chr13 22107759 22113027 -79760142 + L1PA16 LINE L1 1427 6860 -9 2373 253 48 19 chr13 22113066 22114322 -79758847 + L1MEc LINE L1 1864 3124 -3091 833 101 51 70 chr13 22114325 22114377 -79758792 + MER41A LTR ERV1 400 451 -103 2234 80 0 0 chr13 22114377 22114652 -79758517 + AluSc SINE Alu 35 309 0 833 101 51 70 chr13 22114652 22114757 -79758412 + MER41A LTR ERV1 451 554 0 5386 118 27 30 chr13 22114757 22115388 -79757781 + MER41A-int LTR ERV1 1 632 -5314 2304 92 16 0 chr13 22115388 22115693 -79757476 - AluSg SINE Alu 0 310 1 5386 118 27 30 chr13 22115693 22116646 -79756523 + MER41A-int LTR ERV1 632 1668 -4278 4661 112 35 18 chr13 22116689 22117600 -79755569 + MER41A-int LTR ERV1 1944 2946 -3000 * 12181 103 28 18 chr13 22117582 22119879 -79753290 + MER41B-int LTR ERV1 4092 5941 -5 3435 119 9 11 chr13 22119890 22120438 -79752731 + MER41B LTR ERV1 1 547 -88 356 238 139 5 chr13 22120446 22120669 -79752500 + L1MEc LINE L1 3116 3368 -2847 256 176 0 0 chr13 22120684 22120735 -79752434 - L1ME2 LINE L1 -64 6100 6050 25 31 0 0 chr13 22120854 22120886 -79752283 + AT_rich Low_complexity Low_complexity 1 32 0 779 175 58 0 chr13 22120923 22121077 -79752092 - MER58B DNA MER1_type -12 329 167 803 226 53 43 chr13 22121079 22121402 -79751767 + L1ME2 LINE L1 5829 6154 -10 285 183 42 42 chr13 22123366 22123437 -79749732 - MIR SINE MIR -128 134 64 196 244 22 0 chr13 22123437 22123482 -79749687 - MIR SINE MIR -155 107 62 952 240 69 38 chr13 22123763 22124155 -79749014 - MER96B DNA MER1_type? -1 416 13 273 250 229 14 chr13 22124278 22124418 -79748751 - MIR SINE MIR -65 197 28 26 0 0 0 chr13 22124935 22124961 -79748208 + AT_rich Low_complexity Low_complexity 1 26 0 247 309 21 31 chr13 22125441 22125538 -79747631 + L2 LINE L2 3208 3303 -10 2113 127 0 7 chr13 22126138 22126437 -79746732 - AluSg SINE Alu -13 297 1 250 184 0 41 chr13 22126703 22126752 -79746417 + MER5B DNA MER1_type 8 54 -124 401 347 84 22 chr13 22127062 22127382 -79745787 - L2 LINE L2 -743 2571 2232 236 64 21 43 chr13 22127391 22127438 -79745731 + LTR14B LTR ERVK 1 46 -562 * 1916 122 98 16 chr13 22127426 22127794 -79745375 + LTR14B LTR ERVK 211 608 0 266 335 111 47 chr13 22127831 22128383 -79744786 - L2 LINE L2 -1120 2194 1608 434 271 125 49 chr13 22129921 22130884 -79742285 - L1M4 LINE L1 -2845 3301 2266 186 43 0 0 chr13 22130906 22130929 -79742240 + (TC)n Simple_repeat Simple_repeat 2 24 0 2569 78 24 16 chr13 22130945 22131317 -79741852 - THE1C LTR MaLR 0 375 1 540 281 22 0 chr13 22131885 22132020 -79741149 + MIR3 SINE MIR 70 207 -1 1481 197 3 36 chr13 22132240 22132545 -79740624 - AluJo SINE Alu -13 299 5 1678 235 28 40 chr13 22133218 22133789 -79739380 - L1MC4a LINE L1 -88 7720 7157 273 297 14 22 chr13 22133891 22134029 -79739140 - L1MEd LINE L1 -5914 205 69 246 32 0 0 chr13 22134404 22134435 -79738734 + (ATG)n Simple_repeat Simple_repeat 2 32 0 231 36 0 0 chr13 22134859 22134887 -79738282 + (TG)n Simple_repeat Simple_repeat 1 28 0 1048 117 160 34 chr13 22136251 22136457 -79736712 - LTR18B LTR ERVL 0 614 383 1209 122 15 10 chr13 22136500 22136697 -79736472 - LTR18B LTR ERVL -416 198 1 322 267 89 0 chr13 22138804 22138905 -79734264 - MIR SINE MIR -53 209 100 300 338 91 48 chr13 22139002 22139399 -79733770 - L2 LINE L2 -3 3269 2856 2371 104 0 0 chr13 22139551 22139858 -79733311 - AluSx SINE Alu -5 307 1 389 305 169 0 chr13 22140189 22140402 -79732767 - L1MC/D LINE L1 -2054 5754 5506 371 258 75 19 chr13 22140947 22141160 -79732009 - L1MC4a LINE L1 -1906 5902 5678 207 250 191 15 chr13 22142134 22142202 -79730967 - L2 LINE L2 -2 3270 3191 388 156 0 0 chr13 22142205 22142269 -79730900 + LTR8A LTR ERV1 664 727 0 202 241 52 0 chr13 22142499 22142557 -79730612 - MIR3 SINE MIR -25 183 123 1355 264 27 11 chr13 22143082 22143556 -79729613 + L1ME3 LINE L1 5402 5883 -279 543 119 0 0 chr13 22143569 22143653 -79729516 + MER67D LTR ERV1 26 109 -405 22 109 0 0 chr13 22143653 22143745 -79729424 + AT_rich Low_complexity Low_complexity 1 92 0 1028 186 70 0 chr13 22143772 22143987 -79729182 + MER67C LTR ERV1 114 343 -367 1519 156 38 38 chr13 22144007 22144354 -79728815 + MER4A LTR ERV1 1 347 -317 286 167 17 17 chr13 22144474 22144534 -79728635 + MER4C LTR ERV1 296 355 -110 237 136 23 0 chr13 22144531 22144575 -79728594 + MER4A LTR ERV1 603 647 -17 * 582 249 66 6 chr13 22144625 22144806 -79728363 + MER67D LTR ERV1 319 510 -4 2138 154 30 0 chr13 22145828 22146166 -79727003 + MER7A DNA MER2_type 1 346 0 2083 122 3 29 chr13 22146542 22146854 -79726315 + AluSx SINE Alu 1 304 -8 323 370 24 8 chr13 22146988 22147115 -79726054 + L1ME4a LINE L1 5678 5806 -2002 269 207 11 23 chr13 22147204 22147291 -79725878 + L1ME4a LINE L1 5929 6014 -107 336 83 0 0 chr13 22147291 22147339 -79725830 + (T)n Simple_repeat Simple_repeat 1 48 0 1803 130 67 23 chr13 22147437 22147736 -79725433 - AluSx SINE Alu 0 312 1 448 250 45 51 chr13 22148173 22148349 -79724820 + MER5A DNA MER1_type 9 183 -6 277 224 86 43 chr13 22148460 22148576 -79724593 + MER63 DNA MER1_type 2 748 -88 341 197 0 0 chr13 22148702 22148763 -79724406 + L1MC/D LINE L1 5503 5563 -2245 1065 158 5 48 chr13 22148763 22148972 -79724197 - MLT2D LTR ERVL 0 414 215 781 259 54 11 chr13 22150350 22150648 -79722521 + MLT1I LTR MaLR 63 402 -7 325 296 8 16 chr13 22150967 22151092 -79722077 - MLT1H LTR MaLR -387 162 39 249 218 77 96 chr13 22151190 22151232 -79721937 + L2 LINE L2 22 63 -3251 562 231 16 55 chr13 22151232 22151414 -79721755 - MER69A DNA AcHobo -2 175 1 249 218 77 96 chr13 22151414 22151527 -79721642 + L2 LINE L2 63 174 -3140 883 291 50 18 chr13 22151548 22151830 -79721339 + L2 LINE L2 3019 3309 -4 307 213 33 0 chr13 22151929 22151990 -79721179 - MIR3 SINE MIR -22 186 124 228 216 0 14 chr13 22151991 22152065 -79721104 - Charlie2 DNA MER1_type -116 2746 2674 23231 159 29 23 chr13 22152068 22152209 -79720960 - L1PA10 LINE L1 -4 6479 6340 189 0 0 0 chr13 22152209 22152230 -79720939 + (TCCCC)n Simple_repeat Simple_repeat 1 21 0 23231 159 29 23 chr13 22152230 22157243 -79715926 - L1PA10 LINE L1 -143 6340 1277 180 77 0 0 chr13 22157243 22157269 -79715900 + (TTG)n Simple_repeat Simple_repeat 2 27 0 23231 159 29 23 chr13 22157269 22158539 -79714630 - L1PA10 LINE L1 -5206 1277 17 2155 97 0 42 chr13 22158549 22158858 -79714311 - AluSq SINE Alu -17 296 1 577 236 145 9 chr13 22158858 22159202 -79713967 - Charlie2 DNA MER1_type -171 2691 2301 1072 195 9 26 chr13 22159206 22159437 -79713732 + MER46A DNA MER2_type 1 227 -9 1025 207 40 92 chr13 22159461 22159887 -79713282 - Charlie2 DNA MER1_type -574 2288 1885 590 215 42 14 chr13 22160012 22160156 -79713013 + MER45A DNA AcHobo 31 178 0 * 623 254 85 27 chr13 22160156 22160378 -79712791 - Charlie2 DNA MER1_type -2626 236 2 2658 79 27 3 chr13 22160642 22161008 -79712161 + L1PA11 LINE L1 5798 6172 -2 195 296 0 19 chr13 22161671 22161725 -79711444 + MIR SINE MIR 23 75 -133 449 152 0 11 chr13 22161964 22162056 -79711113 - L1MDa LINE L1 -4115 2425 2335 181 325 0 0 chr13 22164334 22164374 -79708795 + L2 LINE L2 3210 3249 -23 222 333 80 0 chr13 22166366 22166441 -79706728 - L2 LINE L2 -20 3252 3172 300 264 137 61 chr13 22167138 22167335 -79705834 - HAL1 LINE L1 -2295 212 1 399 41 0 0 chr13 22167872 22167921 -79705248 + (CA)n Simple_repeat Simple_repeat 1 49 0 2043 216 50 17 chr13 22168359 22168877 -79704292 - MLT1F1 LTR MaLR -32 535 1 333 390 26 16 chr13 22168909 22169099 -79704070 + L2 LINE L2 2843 3034 -238 183 316 0 18 chr13 22169242 22169299 -79703870 + L2 LINE L2 3193 3248 -24 188 313 157 20 chr13 22169447 22169696 -79703473 - L2 LINE L2 -814 2500 2218 1961 140 20 7 chr13 22171524 22171817 -79701352 - AluSx SINE Alu -15 297 1 945 182 28 0 chr13 22171883 22172064 -79701105 + MLT1B LTR MaLR 1 186 -204 630 205 8 126 chr13 22172060 22172299 -79700870 - LTR24B LTR ERV1 -178 398 188 * 281 148 168 30 chr13 22172394 22172495 -79700674 - LTR23-int LTR ERV1 0 5123 5009 253 319 12 25 chr13 22172866 22172888 -79700281 - MER70-int LTR ERVL -328 4695 4674 338 296 8 15 chr13 22172888 22173020 -79700149 - MER110-int LTR ERV1 -467 6209 6079 2367 78 0 37 chr13 22173498 22173819 -79699350 + AluY SINE Alu 1 309 -2 382 294 74 40 chr13 22174787 22175113 -79698056 - MER110-int LTR ERV1 -2169 2478 2142 539 217 53 59 chr13 22176412 22176734 -79696435 + L1PA16 LINE L1 5812 6131 -35 1245 179 45 38 chr13 22176734 22177024 -79696145 - THE1B LTR MaLR -72 292 1 244 251 239 25 chr13 22177024 22177187 -79695982 + L1ME3A LINE L1 5913 6110 -60 186 319 134 64 chr13 22177680 22177837 -79695332 + MIR SINE MIR 1 168 -94 308 214 9 0 chr13 22177851 22177963 -79695206 + (TA)n Simple_repeat Simple_repeat 1 113 0 1242 221 52 11 chr13 22177982 22178253 -79694916 - AluJo SINE Alu -30 282 1 264 167 0 0 chr13 22178255 22178303 -79694866 + T-rich Low_complexity Low_complexity 1 48 0 6061 126 13 49 chr13 22178320 22179470 -79693699 + L1P LINE L1 3529 4637 -1509 1006 254 48 48 chr13 22179797 22180132 -79693037 + LTR16A LTR ERVL 105 439 -11 1913 117 88 0 chr13 22180401 22180675 -79692494 + AluSc SINE Alu 1 298 -11 1050 182 0 6 chr13 22181588 22181758 -79691411 - AluJb SINE Alu -19 293 125 33 0 0 0 chr13 22181758 22181791 -79691378 + AT_rich Low_complexity Low_complexity 1 33 0 305 309 71 24 chr13 22182424 22182550 -79690619 + MIR3 SINE MIR 66 197 -11 414 0 0 0 chr13 22182577 22182623 -79690546 + (TTA)n Simple_repeat Simple_repeat 3 48 0 39381 35 23 8 chr13 22182623 22188487 -79684682 - L1PA7 LINE L1 -18 6136 187 407 326 181 5 chr13 22189851 22190072 -79683097 + MIR SINE MIR 3 262 0 256 200 36 0 chr13 22191161 22191216 -79681953 + GA-rich Low_complexity Low_complexity 2 58 0 936 136 0 22 chr13 22191216 22191400 -79681769 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 2238 124 7 0 chr13 22191956 22192263 -79680906 + AluSp SINE Alu 1 309 -4 269 296 148 9 chr13 22192632 22192747 -79680422 + MIR3 SINE MIR 27 157 -51 3779 125 15 61 chr13 22192969 22193904 -79679265 - L1MA5 LINE L1 -4 6296 5211 1404 76 10 0 chr13 22193908 22194105 -79679064 + L1MA1 LINE L1 6097 6295 -7 312 237 179 47 chr13 22194115 22194305 -79678864 - L1M4 LINE L1 -1623 4523 4309 439 161 35 0 chr13 22194307 22194394 -79678775 - L1M2a LINE L1 -7075 93 4 325 244 26 0 chr13 22194485 22194563 -79678606 - L3 LINE CR1 -149 1428 1349 325 297 33 6 chr13 22194641 22194823 -79678346 + L1ME LINE L1 5325 5511 -653 2042 254 29 28 chr13 22194968 22195683 -79677486 + L1ME3 LINE L1 5445 6160 -2 1096 306 30 21 chr13 22195920 22196348 -79676821 - LTR16A LTR ERVL -3 447 16 1054 339 63 18 chr13 22196818 22197531 -79675638 - ERVL LTR ERVL -951 4813 4069 2156 113 10 7 chr13 22198108 22198410 -79674759 - AluSq SINE Alu -10 303 1 421 233 11 0 chr13 22199476 22199566 -79673603 + L2 LINE L2 3182 3272 0 182 345 46 23 chr13 22199589 22199676 -79673493 + L2 LINE L2 2994 3082 -190 357 75 0 0 chr13 22199743 22199796 -79673373 + (TC)n Simple_repeat Simple_repeat 2 54 0 218 338 144 30 chr13 22200937 22201271 -79671898 + L2 LINE L2 2368 2739 -575 254 146 0 135 chr13 22202277 22202366 -79670803 + AluSq/x SINE Alu 59 135 -167 2105 130 0 20 chr13 22202997 22203352 -79669817 - L1MA8 LINE L1 -430 5861 5514 324 0 0 0 chr13 22203456 22203492 -79669677 + (CA)n Simple_repeat Simple_repeat 2 37 0 273 387 21 14 chr13 22203498 22203640 -79669529 - MIR SINE MIR -73 189 47 22 0 0 0 chr13 22203925 22203947 -79669222 + AT_rich Low_complexity Low_complexity 1 22 0 1930 186 32 67 chr13 22204221 22204390 -79668779 - MLT1D LTR MaLR 0 505 332 2029 161 148 30 chr13 22204390 22204855 -79668314 - MLT2B1 LTR ERVL 0 520 1 1930 186 32 67 chr13 22204855 22205208 -79667961 - MLT1D LTR MaLR -173 332 1 306 314 157 10 chr13 22205278 22205482 -79667687 + MIR SINE MIR 3 236 -26 417 324 78 64 chr13 22206869 22207165 -79666004 + L1ME LINE L1 5316 5615 -506 2314 113 0 3 chr13 22207482 22207783 -79665386 + AluSq SINE Alu 1 300 -13 4859 55 8 0 chr13 22208401 22209037 -79664132 - L1PA7 LINE L1 -94 6060 5420 4733 115 8 0 chr13 22209033 22209780 -79663389 + L1P LINE L1 2454 3206 -2940 * 472 250 83 22 chr13 22209790 22210018 -79663151 - L1MC4a LINE L1 -1885 5923 5682 3840 100 42 8 chr13 22210519 22211159 -79662010 + L1P LINE L1 3079 3740 -2406 21 0 0 0 chr13 22211515 22211536 -79661633 + AT_rich Low_complexity Low_complexity 1 21 0 213 333 0 0 chr13 22211970 22212060 -79661109 + GA-rich Low_complexity Low_complexity 1 90 0 1070 200 37 62 chr13 22212785 22213140 -79660029 - LTR24-int LTR ERV1 -4473 650 305 490 272 21 21 chr13 22213265 22213456 -79659713 - LTR24 LTR ERV1 0 467 277 755 262 63 30 chr13 22213581 22213818 -79659351 - MIR SINE MIR -1 261 17 201 277 0 0 chr13 22214082 22214129 -79659040 + MIR SINE MIR 102 148 -114 2014 158 12 92 chr13 22214132 22214643 -79658526 + L1PB4 LINE L1 5684 6153 -3 193 158 0 26 chr13 22214644 22214682 -79658487 + MIR3 SINE MIR 137 173 -35 186 243 27 0 chr13 22215338 22215375 -79657794 - L2 LINE L2 -17 3255 3218 378 221 115 0 chr13 22215393 22215506 -79657663 - MIR SINE MIR 0 262 137 241 286 13 39 chr13 22215931 22216008 -79657161 - MER5A DNA MER1_type 0 189 115 * 258 200 29 57 chr13 22215954 22216024 -79657145 + MER5A DNA MER1_type 35 102 -87 2228 84 0 0 chr13 22216792 22217066 -79656103 - AluSc SINE Alu -15 294 21 195 254 55 0 chr13 22217149 22217204 -79655965 - L2 LINE L2 -42 3230 3173 2374 75 0 3 chr13 22217495 22217788 -79655381 - AluSq SINE Alu -9 304 13 185 333 0 0 chr13 22217791 22217842 -79655327 - MIR SINE MIR -136 126 76 523 218 132 29 chr13 22218830 22219004 -79654165 + ERVL LTR ERVL 2781 2972 -2792 793 240 204 34 chr13 22219023 22219406 -79653763 + MLT1D LTR MaLR 55 502 -3 302 183 169 0 chr13 22219438 22219509 -79653660 + LTR67 LTR ERVL 97 179 -378 335 219 68 68 chr13 22219639 22219785 -79653384 + LTR67 LTR ERVL 412 557 0 354 212 96 106 chr13 22221183 22221381 -79651788 + MLT1E2 LTR MaLR 1 196 -430 * 899 212 31 62 chr13 22221282 22221574 -79651595 + MLT2C1 LTR ERVL 115 397 0 3193 77 37 2 chr13 22221904 22222292 -79650877 + MLT2A1 LTR ERVL 1 407 -37 225 0 0 0 chr13 22222292 22222317 -79650852 + (TA)n Simple_repeat Simple_repeat 2 26 0 3193 77 37 2 chr13 22222317 22222357 -79650812 + MLT2A1 LTR ERVL 407 444 0 305 75 0 0 chr13 22224062 22224102 -79649067 - MLT2D LTR ERVL 0 464 425 333 0 0 0 chr13 22224102 22224139 -79649030 + (TG)n Simple_repeat Simple_repeat 1 37 0 1624 205 27 19 chr13 22224611 22224977 -79648192 - MLT2D LTR ERVL -40 374 6 199 339 18 37 chr13 22225109 22225218 -79647951 + MIR3 SINE MIR 55 161 -47 2229 135 13 70 chr13 22225353 22225555 -79647614 + Tigger2 DNA MER2_type 6 218 -2500 1466 165 5 0 chr13 22225555 22225779 -79647390 + AluJb SINE Alu 1 225 -87 2229 135 13 70 chr13 22225779 22226044 -79647125 + Tigger2 DNA MER2_type 218 446 -2272 703 210 64 13 chr13 22226047 22226204 -79646965 + AluJb SINE Alu 147 311 -1 1131 129 95 0 chr13 22226205 22226415 -79646754 + Tigger2 DNA MER2_type 530 759 -1959 439 184 39 0 chr13 22226468 22226571 -79646598 + Tigger2 DNA MER2_type 2461 2567 -151 561 28 28 0 chr13 22226571 22226643 -79646526 - AluY SINE Alu -14 296 223 777 172 40 0 chr13 22226643 22226794 -79646375 + Tigger2 DNA MER2_type 2552 2708 -10 23 33 0 0 chr13 22227186 22227216 -79645953 + AT_rich Low_complexity Low_complexity 1 30 0 303 219 14 14 chr13 22227224 22227297 -79645872 - HAL1b LINE L1 -105 1243 1171 477 263 73 167 chr13 22227302 22227547 -79645622 - L2 LINE L2 -20 3293 3027 1763 53 0 18 chr13 22227547 22227774 -79645395 - L1PA8 LINE L1 0 6172 5950 419 70 0 0 chr13 22227774 22227831 -79645338 + L1P3 LINE L1 5681 5737 -435 477 263 73 167 chr13 22227831 22227966 -79645203 - L2 LINE L2 -284 3029 2897 535 295 26 11 chr13 22229065 22229255 -79643914 - HERV16 LTR ERVL -4330 666 474 425 244 79 40 chr13 22229408 22229783 -79643386 + MLT1G1 LTR MaLR 78 589 -6 301 315 31 12 chr13 22229804 22229966 -79643203 - HERV16 LTR ERVL -4680 316 152 375 318 124 32 chr13 22230718 22231096 -79642073 - LTR16A LTR ERVL -29 428 16 225 288 0 0 chr13 22232505 22232564 -79640605 - L2 LINE L2 -547 2767 2709 3957 142 47 20 chr13 22232760 22233513 -79639656 - L1MA5 LINE L1 -5 6295 5523 329 256 16 48 chr13 22234330 22234455 -79638714 - LTR16C LTR ERVL -2 489 369 619 272 138 34 chr13 22234458 22234778 -79638391 - LTR16C LTR ERVL -52 439 87 2012 109 10 10 chr13 22234924 22235245 -79637924 - AluSq SINE Alu 0 313 1 1261 242 97 21 chr13 22236626 22237064 -79636105 - MLT1C LTR MaLR 0 467 1 250 75 0 57 chr13 22237270 22237323 -79635846 - L1MC5 LINE L1 -44 7917 7868 1063 226 72 104 chr13 22237411 22237954 -79635215 - L1MC5 LINE L1 -283 7678 7176 2248 114 0 0 chr13 22237954 22238260 -79634909 - AluY SINE Alu -1 310 5 1063 226 72 104 chr13 22238260 22238655 -79634514 - L1MC5 LINE L1 -785 7176 6770 234 241 92 82 chr13 22238771 22239086 -79634083 + L1M4 LINE L1 4500 4817 -1329 350 229 7 64 chr13 22239602 22239742 -79633427 + L1ME1 LINE L1 5977 6108 -58 * 410 192 96 90 chr13 22239647 22239803 -79633366 + L1MA10 LINE L1 6175 6331 -3 331 309 64 0 chr13 22239915 22240025 -79633144 + MIR SINE MIR 76 192 -70 569 184 0 0 chr13 22240805 22240908 -79632261 - MER58 DNA MER1_type 0 2420 2318 287 243 19 93 chr13 22240920 22241027 -79632142 - MER58 DNA MER1_type -2321 99 1 225 0 0 0 chr13 22241677 22241702 -79631467 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 616 301 52 32 chr13 22241785 22242400 -79630769 - L1M4 LINE L1 -1131 5015 4389 318 289 33 43 chr13 22242606 22242817 -79630352 - L1M4 LINE L1 -1988 4158 3950 6739 67 53 0 chr13 22242838 22243215 -79629954 - L1PA7 LINE L1 0 6154 5798 2420 69 6 28 chr13 22243215 22243532 -79629637 - AluY SINE Alu -1 310 1 6739 67 53 0 chr13 22243532 22244175 -79628994 - L1PA7 LINE L1 -356 5798 5124 378 0 0 0 chr13 22244691 22244733 -79628436 + (CA)n Simple_repeat Simple_repeat 2 43 0 1746 145 27 10 chr13 22245077 22245373 -79627796 - AluSx SINE Alu -11 301 1 522 285 105 19 chr13 22245653 22246025 -79627144 - L1M4 LINE L1 -2393 3753 3350 282 259 12 0 chr13 22246332 22246413 -79626756 + MLT1I LTR MaLR 326 407 -2 1948 132 0 43 chr13 22246551 22246877 -79626292 - AluSx SINE Alu 0 312 1 311 282 26 51 chr13 22246912 22247107 -79626062 - L1M4 LINE L1 -2993 3153 2964 1593 161 98 0 chr13 22247146 22247420 -79625749 + AluJo SINE Alu 9 309 -3 354 255 138 7 chr13 22247762 22247907 -79625262 - L1M4 LINE L1 -3647 2499 2336 261 248 103 8 chr13 22248064 22248181 -79624988 - L1MC5 LINE L1 -52 7909 7782 21 57 0 0 chr13 22248309 22248344 -79624825 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 22248441 22248462 -79624707 + AT_rich Low_complexity Low_complexity 1 21 0 379 319 125 83 chr13 22248533 22248680 -79624489 - L2 LINE L2 -422 2892 2753 2172 117 3 3 chr13 22248680 22248980 -79624189 + AluSq SINE Alu 1 300 -13 379 319 125 83 chr13 22248980 22250299 -79622870 - L2 LINE L2 -561 2753 1365 288 328 108 53 chr13 22251293 22251634 -79621535 - L2 LINE L2 -8 3305 2946 204 185 31 15 chr13 22253157 22253222 -79619947 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 1022 249 39 0 chr13 22253225 22253482 -79619687 + Tigger3(Golem) DNA MER2_type 17 283 -2746 5703 92 62 1 chr13 22253665 22255084 -79618085 + L1PA11 LINE L1 4697 6174 0 700 174 17 0 chr13 22255088 22255203 -79617966 - FLAM_C SINE Alu -16 117 1 196 262 0 0 chr13 22255607 22255649 -79617520 + MIR3 SINE MIR 162 203 -5 18356 111 9 13 chr13 22256237 22259245 -79613924 - L1P3 LINE L1 -2304 4157 1162 679 98 0 0 chr13 22259243 22259335 -79613834 - L1P3 LINE L1 -6365 96 5 * 381 237 46 15 chr13 22260144 22260275 -79612894 - MER103 DNA DNA -30 136 2 258 229 0 0 chr13 22260989 22261059 -79612110 - L1ME2 LINE L1 -13 6151 6082 201 176 0 0 chr13 22261498 22261532 -79611637 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 26 30 0 0 chr13 22261706 22261739 -79611430 + AT_rich Low_complexity Low_complexity 1 33 0 193 289 48 48 chr13 22263534 22263638 -79609531 + MIR SINE MIR 112 215 -47 7245 161 112 113 chr13 22263918 22265525 -79607644 + L1MC3 LINE L1 5433 7041 -744 847 156 0 15 chr13 22265525 22265660 -79607509 + AluJ SINE Alu 1 133 -169 7245 161 112 113 chr13 22265660 22265694 -79607475 + L1MC3 LINE L1 7041 7074 -711 1114 165 28 0 chr13 22265694 22265876 -79607293 + AluJ SINE Alu 122 308 -4 7245 161 112 113 chr13 22265876 22266399 -79606770 + L1MC3 LINE L1 7074 7776 -9 31 26 0 0 chr13 22266875 22266913 -79606256 + AT_rich Low_complexity Low_complexity 1 38 0 322 272 228 0 chr13 22267466 22267580 -79605589 + MIR3 SINE MIR 31 170 -38 21 36 0 0 chr13 22267732 22267760 -79605409 + AT_rich Low_complexity Low_complexity 1 28 0 1654 258 51 42 chr13 22268547 22269417 -79603752 - L1M4 LINE L1 -833 5313 4437 645 301 84 3 chr13 22269703 22270049 -79603120 - LTR68 LTR ERV1 -366 374 1 238 313 81 30 chr13 22270060 22270159 -79603010 + L2 LINE L2 3204 3307 -6 1522 219 106 47 chr13 22270159 22270671 -79602498 - MLT1F LTR MaLR 0 542 1 261 211 19 19 chr13 22271959 22272011 -79601158 - L2 LINE L2 -16 3256 3205 1139 281 46 13 chr13 22273499 22273891 -79599278 - LTR16A LTR ERVL -39 411 7 1567 184 3 9 chr13 22275184 22275500 -79597669 - L1ME2 LINE L1 -376 5936 5623 327 237 86 59 chr13 22275540 22275692 -79597477 + L1MA9 LINE L1 6119 6274 -38 23 0 0 0 chr13 22275692 22275715 -79597454 + AT_rich Low_complexity Low_complexity 1 23 0 349 200 13 13 chr13 22275746 22275821 -79597348 + MER21B LTR ERV1 16 90 -773 27 49 0 0 chr13 22275969 22276010 -79597159 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 22276066 22276088 -79597081 + AT_rich Low_complexity Low_complexity 1 22 0 845 252 160 69 chr13 22279186 22279322 -79593847 - MLT1E LTR MaLR -68 525 403 2339 70 10 3 chr13 22279322 22279622 -79593547 - AluY SINE Alu -9 302 1 845 252 160 69 chr13 22279622 22279714 -79593455 - MLT1E LTR MaLR -190 403 321 3505 152 0 4 chr13 22279714 22280242 -79592927 - MER1A DNA MER1_type 0 527 2 845 252 160 69 chr13 22280242 22280493 -79592676 - MLT1E LTR MaLR -272 321 1 260 298 51 47 chr13 22280603 22281247 -79591922 - L1M4 LINE L1 -2169 3977 3331 1626 191 40 35 chr13 22281484 22281856 -79591313 - MLT1A2 LTR MaLR 0 374 1 2029 214 30 13 chr13 22281879 22282338 -79590831 + MLT1C LTR MaLR 1 467 0 399 256 192 0 chr13 22283488 22283644 -79589525 + L2 LINE L2 2852 3037 -276 1996 206 84 4 chr13 22283678 22284163 -79589006 - MER74A LTR ERVL -30 528 5 4723 119 29 6 chr13 22284334 22285057 -79588112 + L1PA16 LINE L1 5418 6157 -9 791 197 0 0 chr13 22285647 22285794 -79587375 - MLT1A1 LTR MaLR -48 317 171 2617 42 0 3 chr13 22286144 22286454 -79586715 - AluYa5 SINE Alu -2 309 1 11831 81 7 0 chr13 22286455 22288559 -79584610 - L1P3 LINE L1 -393 5779 3668 298 119 0 0 chr13 22288556 22288598 -79584571 + L1P3 LINE L1 29 70 -6391 * 1040 211 87 16 chr13 22288767 22289090 -79584079 - LTR48B LTR ERV1 0 644 299 605 163 0 47 chr13 22289190 22289319 -79583850 - FAM SINE Alu -62 123 1 288 296 96 32 chr13 22289535 22289660 -79583509 - MER5B DNA MER1_type -4 174 42 392 304 61 16 chr13 22289752 22289918 -79583251 + MIR SINE MIR 10 183 -70 477 203 12 28 chr13 22290496 22290749 -79582420 + GA-rich Low_complexity Low_complexity 1 248 0 21 57 0 0 chr13 22290998 22291033 -79582136 + AT_rich Low_complexity Low_complexity 1 35 0 1145 282 30 30 chr13 22291172 22291624 -79581545 + LTR40a LTR ERVL 5 448 -14 1244 242 21 9 chr13 22291649 22291980 -79581189 + HERVL40 LTR ERVL 17 351 -5179 1517 220 80 23 chr13 22292160 22292597 -79580572 + LTR40b LTR ERVL 1 462 0 369 232 99 110 chr13 22292597 22292932 -79580237 - LTR16A1 LTR ERVL -71 386 54 560 282 153 21 chr13 22294958 22295384 -79577785 - L1ME3A LINE L1 -219 5951 5470 1910 280 55 29 chr13 22295458 22295697 -79577472 - L1ME3A LINE L1 -26 6144 5913 216 0 0 0 chr13 22295697 22295721 -79577448 + (TG)n Simple_repeat Simple_repeat 2 25 0 1910 280 55 29 chr13 22295721 22296349 -79576820 - L1ME3A LINE L1 -257 5913 5254 2009 287 90 27 chr13 22296350 22297522 -79575647 - L1ME3A LINE L1 -2366 3780 2484 2193 142 63 36 chr13 22297522 22297937 -79575232 + MSTB LTR MaLR 1 426 0 2009 287 90 27 chr13 22297937 22298327 -79574842 - L1ME3A LINE L1 -3662 2484 2120 741 304 219 43 chr13 22298499 22299284 -79573885 + L3 LINE CR1 48 970 -607 291 212 0 30 chr13 22300050 22300149 -79573020 - HAL1 LINE L1 -1042 1465 1370 1485 260 124 27 chr13 22300165 22300290 -79572879 - HAL1 LINE L1 -124 2383 2272 2317 166 23 14 chr13 22300290 22300718 -79572451 + MSTB1 LTR MaLR 1 432 0 1485 260 124 27 chr13 22300718 22301416 -79571753 - HAL1 LINE L1 -235 2272 1480 894 265 68 68 chr13 22301458 22302065 -79571104 - HAL1 LINE L1 -1730 777 168 1595 223 7 0 chr13 22302065 22302352 -79570817 - AluJo SINE Alu -23 289 1 894 265 68 68 chr13 22302352 22302510 -79570659 - HAL1 LINE L1 -2338 169 12 333 221 12 0 chr13 22302522 22302608 -79570561 + MER103 DNA DNA 55 141 -25 414 232 14 49 chr13 22302631 22302773 -79570396 - MLT1I LTR MaLR -34 375 239 455 316 126 5 chr13 22303176 22303382 -79569787 + MIR SINE MIR 28 258 -4 1756 147 48 0 chr13 22303382 22303655 -79569514 + AluSq SINE Alu 1 286 -27 423 0 0 0 chr13 22303658 22303705 -79569464 + (TA)n Simple_repeat Simple_repeat 2 48 0 264 30 0 0 chr13 22303704 22303737 -79569432 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 186 191 0 0 chr13 22303741 22303783 -79569386 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2325 98 0 0 chr13 22304082 22304378 -79568791 + AluY SINE Alu 2 297 -14 1748 186 0 11 chr13 22304471 22304842 -79568327 + L1PA14 LINE L1 2290 2656 -3490 * 9328 187 10 12 chr13 22304838 22306813 -79566356 + L1PA14 LINE L1 3266 5236 -910 1964 105 28 50 chr13 22306819 22307182 -79565987 - THE1C LTR MaLR -20 355 1 5312 143 11 2 chr13 22307197 22308095 -79565074 + L1PA14 LINE L1 5254 6159 -2 3485 120 2 22 chr13 22308460 22309002 -79564167 + LTR26B LTR ERV1 1 531 0 3632 118 13 0 chr13 22310005 22310545 -79562624 + L1PA15 LINE L1 5610 6156 -9 21 0 0 0 chr13 22310555 22310576 -79562593 + AT_rich Low_complexity Low_complexity 1 21 0 567 189 139 137 chr13 22312498 22313002 -79560167 - MLT1D LTR MaLR 0 505 1 1675 181 28 19 chr13 22313164 22313528 -79559641 + THE1C LTR MaLR 1 367 -8 9288 115 45 17 chr13 22313528 22315063 -79558106 + THE1C-int LTR MaLR 3 1580 0 1663 164 66 23 chr13 22315078 22315425 -79557744 + THE1C LTR MaLR 14 375 0 1901 181 17 39 chr13 22315947 22316362 -79556807 - MLT2D LTR ERVL -8 406 1 964 299 129 55 chr13 22316929 22317085 -79556084 + L1MC4a LINE L1 4023 4166 -1980 1380 146 33 11 chr13 22317085 22317360 -79555809 - L1MA8 LINE L1 0 6291 6011 964 299 129 55 chr13 22317360 22317569 -79555600 + L1MC4a LINE L1 4166 4358 -1788 195 42 0 0 chr13 22317569 22317593 -79555576 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 964 299 129 55 chr13 22317593 22318225 -79554944 + L1MC4a LINE L1 4358 5095 -1051 336 273 86 8 chr13 22318254 22318382 -79554787 + L1MC4a LINE L1 5195 5332 -814 2020 125 0 40 chr13 22318386 22318707 -79554462 + AluSx SINE Alu 1 308 -4 766 294 109 27 chr13 22318737 22319223 -79553946 + L1MC4a LINE L1 5412 5937 -1871 879 250 23 5 chr13 22320516 22320736 -79552433 + MER58A DNA MER1_type 1 224 0 498 303 60 11 chr13 22320831 22321016 -79552153 + MIR SINE MIR 19 212 -50 456 186 41 0 chr13 22321100 22321197 -79551972 - MLT1H1 LTR MaLR -49 506 406 749 206 7 0 chr13 22321275 22321411 -79551758 + FLAM_C SINE Alu 1 137 -6 927 255 99 14 chr13 22321411 22321693 -79551476 - MLT1H1 LTR MaLR -247 308 3 808 125 18 60 chr13 22321712 22321880 -79551289 + L1M3f LINE L1 1 161 -5167 2037 135 10 0 chr13 22321967 22322264 -79550905 + AluSx SINE Alu 7 306 -6 4700 57 0 7 chr13 22323533 22324128 -79549041 + L1PA7 LINE L1 5558 6148 -6 32 43 0 0 chr13 22324161 22324207 -79548962 + AT_rich Low_complexity Low_complexity 1 46 0 253 278 67 11 chr13 22324411 22324501 -79548668 - MIR SINE MIR -50 212 118 405 254 159 32 chr13 22325029 22325218 -79547951 + L2 LINE L2 2943 3155 -117 266 172 153 24 chr13 22325992 22326075 -79547094 - MER5A DNA MER1_type -8 181 78 229 235 0 49 chr13 22328167 22328248 -79544921 - MER103 DNA DNA -73 93 17 1351 224 53 18 chr13 22328284 22328624 -79544545 - MLT1A1 LTR MaLR -11 354 3 395 326 125 42 chr13 22329791 22330144 -79543025 + MER115 DNA AcHobo 59 440 -253 522 287 60 12 chr13 22330294 22330461 -79542708 - MIR SINE MIR -21 241 67 2211 117 0 0 chr13 22331882 22332180 -79540989 + AluSx SINE Alu 1 298 -14 491 323 68 36 chr13 22332686 22332937 -79540232 + MIR SINE MIR 4 262 0 4629 161 52 13 chr13 22333101 22333592 -79539577 - L1MA8 LINE L1 -4 6287 5817 617 40 0 56 chr13 22333592 22333717 -79539452 + (TA)n Simple_repeat Simple_repeat 2 119 0 4629 161 52 13 chr13 22333717 22334421 -79538748 - L1MA8 LINE L1 -474 5817 5045 339 262 31 10 chr13 22334589 22334716 -79538453 + MER21B LTR ERV1 24 196 -409 * 1040 274 42 83 chr13 22334715 22335329 -79537840 + MER21B LTR ERV1 126 714 -149 25 0 0 0 chr13 22336358 22336383 -79536786 + AT_rich Low_complexity Low_complexity 1 25 0 2354 95 0 0 chr13 22336399 22336695 -79536474 + AluSg SINE Alu 1 296 -14 2201 280 35 54 chr13 22336941 22337923 -79535246 + L1M4b LINE L1 18 1217 -5642 1281 237 19 57 chr13 22338389 22338799 -79534370 + L1M4b LINE L1 1211 1590 -5265 2448 201 50 4 chr13 22338799 22339296 -79533873 + MLT2B1 LTR ERVL 1 520 0 1281 237 19 57 chr13 22339296 22339566 -79533603 + L1M4b LINE L1 1590 1869 -4986 312 27 0 0 chr13 22340185 22340222 -79532947 + (TG)n Simple_repeat Simple_repeat 2 38 0 309 329 62 50 chr13 22340287 22340448 -79532721 + L2 LINE L2 3017 3179 -93 393 247 14 7 chr13 22340512 22340658 -79532511 + GA-rich Low_complexity Low_complexity 2 148 0 381 291 0 0 chr13 22342323 22342488 -79530681 + (CA)n Simple_repeat Simple_repeat 1 165 0 495 268 0 0 chr13 22342509 22342819 -79530350 + (CA)n Simple_repeat Simple_repeat 1 310 0 204 322 44 11 chr13 22343795 22343885 -79529284 + MER5A DNA MER1_type 63 155 -34 322 363 105 36 chr13 22344551 22345120 -79528049 - L2 LINE L2 0 3272 2615 385 217 20 13 chr13 22345209 22345361 -79527808 + (TA)n Simple_repeat Simple_repeat 1 153 0 587 300 137 26 chr13 22346120 22346500 -79526669 - L2 LINE L2 -784 2530 2109 4496 135 30 1 chr13 22346942 22347639 -79525530 - LTR62 LTR ERVK -2 717 1 758 252 85 30 chr13 22347956 22348321 -79524848 - L1MC4a LINE L1 -1759 6049 5665 15765 82 5 0 chr13 22348807 22351304 -79521865 + L1P3 LINE L1 3079 5589 -565 322 314 77 48 chr13 22351475 22351682 -79521487 + L2 LINE L2 1860 2072 -1242 6775 118 20 63 chr13 22351806 22352021 -79521148 + Tigger3b DNA MER2_type 3 226 -2802 1172 139 28 5 chr13 22352021 22352237 -79520932 + L1MA5 LINE L1 6078 6298 -2 6775 118 20 63 chr13 22352237 22353015 -79520154 + Tigger3b DNA MER2_type 226 932 -2096 2253 75 0 0 chr13 22353015 22353356 -79519813 - AluSc SINE Alu 0 341 1 6775 118 20 63 chr13 22353356 22353643 -79519526 + Tigger3b DNA MER2_type 932 1230 -1 234 371 0 0 chr13 22353655 22353744 -79519425 + L2 LINE L2 2260 2348 -966 419 95 54 0 chr13 22353877 22353951 -79519218 - L1MA7 LINE L1 -5 6286 6209 1229 227 175 19 chr13 22354491 22355362 -79517807 - L1ME3 LINE L1 -3 6159 5155 197 400 110 0 chr13 22355492 22355592 -79517577 + L2 LINE L2 3141 3251 -21 180 0 0 0 chr13 22355891 22355911 -79517258 + (A)n Simple_repeat Simple_repeat 1 20 0 1608 161 48 45 chr13 22356691 22357001 -79516168 - AluSx SINE Alu -1 311 1 423 0 0 0 chr13 22358333 22358380 -79514789 + (TG)n Simple_repeat Simple_repeat 2 48 0 236 159 0 95 chr13 22360222 22360285 -79512884 - L1MC4 LINE L1 -26 8016 7960 1157 211 30 32 chr13 22360323 22360435 -79512734 - L1ME3 LINE L1 -1302 4844 4733 1935 167 50 18 chr13 22360435 22360819 -79512350 - MSTD LTR MaLR 0 396 1 1157 211 30 32 chr13 22360819 22361076 -79512093 - L1ME3 LINE L1 -1413 4733 4476 826 267 152 38 chr13 22362555 22362740 -79510429 + MLT1H LTR MaLR 1 164 -385 1654 166 33 33 chr13 22362740 22363047 -79510122 + AluJo SINE Alu 1 307 -5 826 267 152 38 chr13 22363047 22363336 -79509833 + MLT1H LTR MaLR 164 529 -20 330 271 0 12 chr13 22364790 22364875 -79508294 + MIR3 SINE MIR 86 169 -39 2610 142 42 2 chr13 22365115 22365525 -79507644 + MSTB LTR MaLR 1 426 0 4870 178 97 14 chr13 22365525 22365992 -79507177 + MSTB-int LTR MaLR 1 428 -1223 1704 197 7 0 chr13 22365992 22366291 -79506878 + AluJo SINE Alu 1 301 -11 4870 178 97 14 chr13 22366291 22366867 -79506302 + MSTB-int LTR MaLR 428 1130 -521 311 254 0 0 chr13 22366894 22366965 -79506204 + MSTB-int LTR MaLR 1581 1651 0 1780 152 34 133 chr13 22366966 22367440 -79505729 + MSTB LTR MaLR 2 426 0 334 224 182 79 chr13 22367535 22367700 -79505469 + MIR SINE MIR 79 260 -2 435 317 32 27 chr13 22369531 22369717 -79503452 - MIR SINE MIR -51 211 25 2477 45 7 10 chr13 22369820 22370130 -79503039 - AluY SINE Alu -2 309 1 185 299 247 0 chr13 22370601 22370678 -79502491 + MER5A DNA MER1_type 11 106 -83 1582 170 51 11 chr13 22370797 22371073 -79502096 - AluJo SINE Alu -25 287 1 272 278 0 28 chr13 22371090 22371162 -79502007 + L2 LINE L2 3203 3272 0 441 309 67 24 chr13 22371170 22371335 -79501834 - MIR SINE MIR -71 191 20 242 109 0 0 chr13 22371649 22371695 -79501474 + LTR66 LTR ERVL 394 439 -171 333 303 0 0 chr13 22371701 22371790 -79501379 - L1MC4 LINE L1 -1339 6703 6615 193 275 58 29 chr13 22372422 22372491 -79500678 - L2 LINE L2 -9 3263 3193 550 181 173 0 chr13 22373242 22373375 -79499794 - MER5A DNA MER1_type -33 156 1 340 326 49 43 chr13 22373381 22373565 -79499604 - MER5A DNA MER1_type -3 186 2 282 327 19 10 chr13 22373668 22373772 -79499397 - MIR SINE MIR -2 260 156 415 184 13 0 chr13 22373773 22373849 -79499320 - MER2 DNA MER2_type -1 344 268 721 190 7 15 chr13 22373902 22374039 -79499130 - AluJo SINE Alu -176 136 1 1163 166 5 0 chr13 22374061 22374266 -79498903 - MER2 DNA MER2_type -139 206 1 422 148 86 0 chr13 22374269 22374350 -79498819 - MIR SINE MIR -105 157 70 2511 55 0 13 chr13 22374559 22374866 -79498303 - AluY SINE Alu -8 303 1 314 317 150 42 chr13 22375987 22376154 -79497015 - MIR3 SINE MIR -10 198 14 210 310 40 40 chr13 22376333 22376433 -79496736 - L2 LINE L2 -1 3271 3172 2375 147 15 0 chr13 22376572 22376980 -79496189 + L1MB4 LINE L1 5759 6172 -8 209 236 181 42 chr13 22377003 22377075 -79496094 + L2 LINE L2 3187 3268 -4 315 270 40 0 chr13 22377539 22377639 -79495530 - L1ME3 LINE L1 -53 6109 6006 341 22 22 0 chr13 22377684 22377730 -79495439 + (TTA)n Simple_repeat Simple_repeat 3 49 0 24 0 0 0 chr13 22378342 22378366 -79494803 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 22379681 22379702 -79493467 + AT_rich Low_complexity Low_complexity 1 21 0 948 191 108 0 chr13 22379899 22380093 -79493076 + MER58A DNA MER1_type 2 216 -8 285 292 103 17 chr13 22380150 22380584 -79492585 - L1MC4 LINE L1 -184 7777 7311 2430 91 3 0 chr13 22380717 22381026 -79492143 + AluSx SINE Alu 1 310 -2 180 284 28 64 chr13 22381323 22381432 -79491737 + L3b LINE CR1 1120 1224 -359 913 280 36 36 chr13 22382272 22382693 -79490476 - LTR16B LTR ERVL -41 423 3 971 257 78 20 chr13 22383794 22384140 -79489029 + MLT1C LTR MaLR 98 463 -4 6106 32 2 14 chr13 22386636 22387424 -79485745 + L1P LINE L1 4109 4887 -1259 1293 124 0 0 chr13 22388372 22388549 -79484620 + AluSg/x SINE Alu 136 312 0 1887 178 3 3 chr13 22388568 22388871 -79484298 + AluJb SINE Alu 1 303 -9 273 182 0 0 chr13 22388906 22388961 -79484208 + GA-rich Low_complexity Low_complexity 2 56 0 1776 158 3 17 chr13 22388968 22389266 -79483903 + AluJb SINE Alu 1 294 -18 1242 156 33 0 chr13 22389300 22389512 -79483657 - MER20 DNA MER1_type 0 219 1 1301 228 73 0 chr13 22389530 22389833 -79483336 - MLT1F LTR MaLR -4 538 214 335 220 20 0 chr13 22389921 22390021 -79483148 + GA-rich Low_complexity Low_complexity 4 105 0 287 263 66 33 chr13 22390044 22390224 -79482945 + L1MC4a LINE L1 5723 5915 -206 2182 119 30 0 chr13 22390896 22391199 -79481970 + AluSx SINE Alu 1 312 0 964 111 217 21 chr13 22391268 22391457 -79481712 - MER30 DNA MER1_type 0 230 5 1930 169 0 3 chr13 22391862 22392175 -79480994 + AluSx SINE Alu 1 312 0 188 328 0 31 chr13 22392310 22392374 -79480795 + L2 LINE L2 2678 2739 -575 198 206 0 0 chr13 22392416 22392479 -79480690 + A-rich Low_complexity Low_complexity 1 63 0 442 362 68 51 chr13 22392547 22392689 -79480480 + L2 LINE L2 2807 2945 -327 1968 170 11 11 chr13 22392689 22393054 -79480115 - MLT1A1 LTR MaLR 0 365 1 442 362 68 51 chr13 22393054 22393364 -79479805 + L2 LINE L2 2945 3267 -5 327 286 8 8 chr13 22393395 22393521 -79479648 - LTR67 LTR ERVL -6 551 426 344 315 108 79 chr13 22394373 22394678 -79478491 + L2 LINE L2 2928 3241 -31 1251 226 67 35 chr13 22394678 22394760 -79478409 + MLT1A1 LTR MaLR 1 79 -286 4543 50 2 0 chr13 22394760 22395318 -79477851 + L1PA8 LINE L1 5612 6170 -2 1251 226 67 35 chr13 22395318 22395576 -79477593 + MLT1A1 LTR MaLR 79 352 -13 23 0 0 0 chr13 22395618 22395641 -79477528 + AT_rich Low_complexity Low_complexity 1 23 0 1139 196 33 121 chr13 22395697 22396028 -79477141 - AluJb SINE Alu 0 302 1 25 65 0 0 chr13 22396211 22396257 -79476912 + AT_rich Low_complexity Low_complexity 1 46 0 236 128 0 0 chr13 22396300 22396339 -79476830 - Charlie7 DNA MER1_type -300 2312 2274 989 259 68 63 chr13 22396513 22396657 -79476512 - Charlie7 DNA MER1_type -2045 567 425 2272 103 0 31 chr13 22396657 22396976 -79476193 - AluSg SINE Alu -1 309 1 989 259 68 63 chr13 22396976 22397388 -79475781 - Charlie7 DNA MER1_type -2187 425 8 2282 109 0 10 chr13 22397821 22398132 -79475037 + AluSc SINE Alu 1 308 -1 459 296 159 6 chr13 22398303 22398479 -79474690 + L3 LINE CR1 1370 1572 -5 933 148 22 50 chr13 22398765 22398947 -79474222 + AluJb SINE Alu 118 294 -18 910 127 0 36 chr13 22398976 22399142 -79474027 - MER51C LTR ERV1 0 640 481 763 116 16 8 chr13 22399142 22399263 -79473906 - MER83A-int LTR ERV1 -28 7788 7667 1975 152 129 62 chr13 22399269 22399788 -79473381 + MER41A LTR ERV1 1 554 0 744 261 41 59 chr13 22400008 22400399 -79472770 - MER83A-int LTR ERV1 -343 8576 3452 5563 60 29 7 chr13 22400417 22400446 -79472723 - MER4E LTR ERV1 0 766 739 2158 105 7 10 chr13 22400446 22400740 -79472429 - AluSp SINE Alu -20 293 1 5563 60 29 7 chr13 22400740 22401459 -79471710 - MER4E LTR ERV1 -27 739 1 402 21 0 0 chr13 22401627 22401674 -79471495 + (CA)n Simple_repeat Simple_repeat 1 47 0 1096 128 24 12 chr13 22401779 22401943 -79471226 - AluSg/x SINE Alu -10 302 137 974 219 63 51 chr13 22402235 22402716 -79470453 - LTR10B LTR ERV1 -5 542 17 1412 51 0 6 chr13 22402823 22402999 -79470170 + AluY SINE Alu 119 293 -18 2099 117 3 0 chr13 22403170 22403460 -79469709 - AluSx SINE Alu -21 291 1 205 139 56 0 chr13 22403529 22403565 -79469604 + GA-rich Low_complexity Low_complexity 5 42 0 212 358 32 21 chr13 22403613 22403708 -79469461 - MER5A DNA MER1_type -59 130 35 * 291 196 0 0 chr13 22403675 22403721 -79469448 + MER5A DNA MER1_type 134 179 -10 21 57 0 0 chr13 22404025 22404060 -79469109 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr13 22404727 22404768 -79468401 + AT_rich Low_complexity Low_complexity 1 41 0 2131 107 3 17 chr13 22405788 22406088 -79467081 - AluSx SINE Alu -16 296 1 451 57 11 45 chr13 22406370 22406458 -79466711 + (TTCC)n Simple_repeat Simple_repeat 1 85 0 2023 120 10 10 chr13 22406458 22406757 -79466412 - AluSc SINE Alu -9 300 2 10174 193 54 47 chr13 22407435 22409659 -79463510 + L1M4c LINE L1 24 2232 -4150 1823 203 3 0 chr13 22409659 22409970 -79463199 + AluJb SINE Alu 1 312 0 10174 193 54 47 chr13 22409970 22410073 -79463096 + L1M4c LINE L1 2232 2333 -4049 317 24 24 0 chr13 22410073 22410115 -79463054 + (CA)n Simple_repeat Simple_repeat 2 44 0 10174 193 54 47 chr13 22410115 22410545 -79462624 + L1M4c LINE L1 2333 2759 -3623 1896 145 28 0 chr13 22410545 22410828 -79462341 + AluSq SINE Alu 1 291 -22 10174 193 54 47 chr13 22410828 22411541 -79461628 + L1M4c LINE L1 2759 3510 -2872 308 210 27 71 chr13 22411729 22411960 -79461209 + MLT1J LTR MaLR 220 450 0 669 206 24 0 chr13 22414916 22415042 -79458127 - FLAM_A SINE Alu -4 129 1 254 261 0 46 chr13 22415103 22415168 -79458001 - L2 LINE L2 0 3272 3211 246 302 0 0 chr13 22415465 22415528 -79457641 + MIR SINE MIR 92 154 -108 236 213 131 0 chr13 22415675 22415736 -79457433 + L2 LINE L2 3242 3310 -3 2276 124 0 0 chr13 22415786 22416092 -79457077 + AluSx SINE Alu 1 306 -6 316 254 28 0 chr13 22418922 22418993 -79454176 - L2 LINE L2 -10 3303 3231 235 336 58 39 chr13 22420392 22420496 -79452673 + L2 LINE L2 3134 3239 -33 210 321 38 61 chr13 22421530 22421610 -79451559 - L3 LINE CR1 -520 1057 980 2233 36 96 0 chr13 22421610 22421890 -79451279 - AluY SINE Alu -4 307 1 210 321 38 61 chr13 22421890 22421940 -79451229 - L3 LINE CR1 -597 980 930 253 282 13 0 chr13 22422045 22422123 -79451046 - MIR SINE MIR -66 142 59 282 211 78 33 chr13 22422234 22422324 -79450845 - L3 LINE CR1 -1013 564 471 1044 231 28 24 chr13 22422780 22423031 -79450138 + MIR SINE MIR 6 257 -5 564 221 156 7 chr13 22424243 22424397 -79448772 - MER5B DNA MER1_type -1 177 1 2200 131 3 0 chr13 22425919 22426224 -79446945 - AluSq SINE Alu -7 306 1 272 173 5 218 chr13 22426361 22426498 -79446671 - MER5B DNA MER1_type -64 125 2 227 295 91 73 chr13 22426931 22427273 -79445896 - L2 LINE L2 -417 2897 2550 232 277 0 0 chr13 22427282 22427347 -79445822 + MER94 DNA DNA 9 73 -61 735 165 9 0 chr13 22427351 22427466 -79445703 + FLAM_C SINE Alu 1 116 -17 269 213 0 0 chr13 22427482 22427543 -79445626 + MER94 DNA DNA 64 124 -10 246 183 122 69 chr13 22427624 22427755 -79445414 - L2 LINE L2 -1037 2277 2140 232 310 0 0 chr13 22428458 22428529 -79444640 - MIR SINE MIR -82 126 56 230 326 146 56 chr13 22430956 22431134 -79442035 - MIR3 SINE MIR -8 200 7 539 270 49 6 chr13 22431417 22431580 -79441589 + MIR SINE MIR 79 248 -14 2624 48 0 0 chr13 22432549 22432859 -79440310 - AluY SINE Alu -1 310 1 21 36 0 0 chr13 22433697 22433725 -79439444 + AT_rich Low_complexity Low_complexity 1 28 0 2419 90 0 0 chr13 22434007 22434307 -79438862 + AluSq SINE Alu 1 300 -13 1695 143 71 0 chr13 22435222 22435502 -79437667 - AluJo SINE Alu -12 300 1 30 69 0 0 chr13 22435601 22435659 -79437510 + AT_rich Low_complexity Low_complexity 1 58 0 429 240 8 8 chr13 22435747 22435872 -79437297 + L1ME1 LINE L1 5007 5131 -1015 2970 227 33 50 chr13 22435883 22436855 -79436314 + L1ME1 LINE L1 5225 6150 -16 2293 87 0 13 chr13 22436855 22437153 -79436016 + AluSx SINE Alu 1 294 -18 326 248 20 67 chr13 22437153 22437187 -79435982 + L1MA10 LINE L1 6300 6334 0 344 153 0 28 chr13 22437222 22437294 -79435875 + GA-rich Low_complexity Low_complexity 1 70 0 438 244 111 15 chr13 22437305 22437440 -79435729 + MIR SINE MIR 21 168 -94 210 71 0 0 chr13 22438612 22438640 -79434529 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 623 283 130 40 chr13 22439409 22439762 -79433407 - L3 LINE CR1 -15 1562 1178 202 289 0 66 chr13 22439754 22439830 -79433339 + L2 LINE L2 3192 3262 -10 * 1960 155 16 16 chr13 22440398 22440772 -79432397 + MLT1B LTR MaLR 17 390 0 21 0 0 0 chr13 22441020 22441041 -79432128 + AT_rich Low_complexity Low_complexity 1 21 0 278 45 136 0 chr13 22441105 22441149 -79432020 - MADE1 DNA Mariner 0 80 31 337 221 71 0 chr13 22441400 22441513 -79431656 - MER112 DNA MER1_type -59 201 81 1300 240 57 64 chr13 22441513 22442090 -79431079 - L2 LINE L2 -2 3311 2719 858 227 0 0 chr13 22442119 22442282 -79430887 + FRAM SINE Alu 1 159 -17 230 279 82 66 chr13 22442450 22442562 -79430607 - MER5A DNA MER1_type -3 186 68 1703 146 36 14 chr13 22442562 22442843 -79430326 - AluJo SINE Alu -25 287 1 230 279 82 66 chr13 22442843 22442913 -79430256 - MER5A DNA MER1_type -121 68 1 265 215 46 0 chr13 22442929 22442994 -79430175 + MIR SINE MIR 56 123 -139 252 256 13 26 chr13 22443915 22443993 -79429176 + MIR3 SINE MIR 9 85 -123 941 209 6 0 chr13 22444132 22444304 -79428865 + MER5A DNA MER1_type 17 189 0 1056 153 6 12 chr13 22444625 22444795 -79428374 + AluJo SINE Alu 1 169 -143 1253 123 15 15 chr13 22444795 22444990 -79428179 + AluJb SINE Alu 118 312 0 615 258 107 30 chr13 22445277 22445548 -79427621 - MLT1K LTR MaLR 0 588 297 243 360 0 0 chr13 22445751 22445840 -79427329 - L2 LINE L2 -649 2665 2577 2022 129 7 10 chr13 22446018 22446321 -79426848 + AluSx SINE Alu 1 302 -10 1549 198 85 0 chr13 22448730 22449059 -79424110 + MLT1A1 LTR MaLR 1 357 -8 338 300 36 27 chr13 22449212 22449322 -79423847 - MIR SINE MIR -81 127 17 225 0 0 0 chr13 22449375 22449400 -79423769 + (A)n Simple_repeat Simple_repeat 1 25 0 208 310 0 0 chr13 22449427 22449485 -79423684 + L2 LINE L2 3244 3301 -12 326 307 54 83 chr13 22450669 22450910 -79422259 + MIR SINE MIR 8 241 -21 242 143 20 0 chr13 22451822 22451871 -79421298 + T-rich Low_complexity Low_complexity 4 53 0 816 155 83 22 chr13 22452272 22452453 -79420716 + LTR47A LTR ERVL 261 452 0 194 189 75 0 chr13 22452739 22452792 -79420377 + L2 LINE L2 2433 2489 -825 393 276 40 60 chr13 22452804 22453003 -79420166 - MIR SINE MIR 0 262 68 204 305 198 0 chr13 22452999 22453196 -79419973 + L2 LINE L2 2505 2740 -574 * 934 80 0 24 chr13 22453196 22453321 -79419848 + AluSq/x SINE Alu 22 143 -169 848 114 0 0 chr13 22453424 22453538 -79419631 + AluSg/x SINE Alu 190 303 -7 418 333 113 0 chr13 22453557 22453743 -79419426 + L2 LINE L2 2771 2977 -337 210 261 0 0 chr13 22453753 22453799 -79419370 + L2 LINE L2 3263 3308 -5 422 296 59 38 chr13 22454797 22455084 -79418085 + LTR16A1 LTR ERVL 162 454 -3 24 0 0 0 chr13 22455624 22455648 -79417521 + AT_rich Low_complexity Low_complexity 1 24 0 200 256 0 0 chr13 22455863 22455902 -79417267 + polypyrimidine Low_complexity Low_complexity 3 41 0 448 298 88 77 chr13 22455907 22456283 -79416886 - L2 LINE L2 0 3313 2934 423 297 0 0 chr13 22456471 22456582 -79416587 - L2 LINE L2 -13 3300 3190 181 326 70 12 chr13 22457515 22457601 -79415568 + L2 LINE L2 3223 3313 0 367 236 114 65 chr13 22457758 22457881 -79415288 - MIR SINE MIR -112 150 22 2935 131 7 2 chr13 22458029 22458456 -79414713 + MER57B LTR ERV1 1 429 -5 361 279 36 9 chr13 22459234 22459345 -79413824 - L1MC4 LINE L1 -1319 6723 6610 322 283 0 22 chr13 22459264 22459356 -79413813 + L1MC4 LINE L1 6614 6703 -1339 * 236 188 0 0 chr13 22459358 22459406 -79413763 - LTR66 LTR ERVL -169 441 394 2115 92 31 20 chr13 22459426 22459718 -79413451 - AluSx SINE Alu -14 298 4 2099 86 45 7 chr13 22459880 22460172 -79412997 + AluY SINE Alu 1 303 -8 6675 239 28 23 chr13 22460530 22463323 -79409846 + L1PA8 LINE L1 2190 4940 -2644 1651 186 0 7 chr13 22463323 22463651 -79409518 + AluJb SINE Alu 1 312 0 6675 239 28 23 chr13 22463651 22463735 -79409434 + L1PA8 LINE L1 4940 5022 -2562 6275 183 36 37 chr13 22463739 22465326 -79407843 + L1PA8 LINE L1 5383 6983 -627 1997 100 36 0 chr13 22465326 22465606 -79407563 + AluSg SINE Alu 1 290 -20 6275 183 36 37 chr13 22465606 22466234 -79406935 + L1PA8 LINE L1 6983 7610 0 2236 75 11 0 chr13 22466446 22466754 -79406415 - AluY SINE Alu 0 311 1 2404 90 0 6 chr13 22467740 22468051 -79405118 - AluSc SINE Alu 0 309 1 1033 233 94 0 chr13 22468207 22468495 -79404674 + L1MC4 LINE L1 7728 8042 0 2436 125 117 5 chr13 22468532 22468917 -79404252 + MSTA LTR MaLR 1 428 0 279 180 0 0 chr13 22469840 22469884 -79403285 - MER58A DNA MER1_type 0 224 181 542 220 85 0 chr13 22469884 22470002 -79403167 - MER58A DNA MER1_type 0 128 1 671 184 18 0 chr13 22470338 22470452 -79402717 - Tigger3(Golem) DNA MER2_type -5 3024 2909 435 235 0 0 chr13 22470458 22470539 -79402630 - Tigger3(Golem) DNA MER2_type -2948 81 1 763 128 0 32 chr13 22471088 22471213 -79401956 - L1PA8 LINE L1 0 6172 6052 2163 229 67 20 chr13 22472999 22473493 -79399676 - LTR40a LTR ERVL -2 517 1 1367 171 0 0 chr13 22473603 22473820 -79399349 + L1PA16 LINE L1 5950 6166 0 1542 136 0 21 chr13 22474479 22474714 -79398455 + AluSx SINE Alu 1 230 -82 2223 118 0 0 chr13 22474738 22475044 -79398125 + AluSc SINE Alu 1 306 -3 429 141 0 0 chr13 22476004 22476075 -79397094 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 181 341 82 12 chr13 22476132 22476217 -79396952 + L2 LINE L2 3172 3262 -10 22 0 0 0 chr13 22477309 22477331 -79395838 + AT_rich Low_complexity Low_complexity 1 22 0 195 350 25 0 chr13 22477491 22477571 -79395598 + L3 LINE CR1 1493 1574 -3 199 231 26 0 chr13 22477918 22477957 -79395212 - L2 LINE L2 -14 3258 3219 248 335 32 19 chr13 22478583 22478738 -79394431 + MLT1L LTR MaLR 450 606 -9 251 207 0 35 chr13 22480140 22480198 -79392971 + MER58A DNA MER1_type 28 83 -24 5239 106 15 18 chr13 22480198 22480992 -79392177 + L1PA16 LINE L1 5375 6166 0 474 202 56 0 chr13 22481022 22481111 -79392058 + MER58A DNA MER1_type 131 224 0 518 237 21 53 chr13 22481177 22481367 -79391802 + L2 LINE L2 3128 3311 -2 2118 130 3 0 chr13 22481845 22482144 -79391025 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr13 22483103 22483126 -79390043 + AT_rich Low_complexity Low_complexity 1 23 0 269 269 28 46 chr13 22483295 22483403 -79389766 + LTR48B LTR ERV1 1 106 -538 * 1384 217 39 77 chr13 22483370 22483836 -79389333 + MER39 LTR ERV1 260 707 0 361 291 36 55 chr13 22483854 22484074 -79389095 + L1ME LINE L1 5607 5822 -299 213 277 77 71 chr13 22484318 22484473 -79388696 + L2 LINE L2 2918 3073 -240 259 360 90 9 chr13 22484611 22484722 -79388447 + L2 LINE L2 3153 3272 0 3832 132 0 22 chr13 22486765 22486947 -79386222 + MER1A DNA MER1_type 1 186 -2514 1900 131 64 0 chr13 22486947 22487229 -79385940 - AluSx SINE Alu -12 300 1 3832 132 0 22 chr13 22487229 22487585 -79385584 + MER1A DNA MER1_type 186 527 0 990 275 86 43 chr13 22487910 22488115 -79385054 + LTR38 LTR ERV1 94 289 -267 2536 156 2 63 chr13 22488115 22488577 -79384592 - MER57B LTR ERV1 0 434 1 990 275 86 43 chr13 22488577 22488815 -79384354 + LTR38 LTR ERV1 289 556 0 1959 110 50 17 chr13 22488824 22489124 -79384045 - AluSg SINE Alu 0 310 1 21 0 0 0 chr13 22489275 22489296 -79383873 + AT_rich Low_complexity Low_complexity 1 21 0 1028 172 25 39 chr13 22489792 22489996 -79383173 - MER3 DNA MER1_type 0 209 9 256 259 32 127 chr13 22490318 22490538 -79382631 + LTR33A LTR ERVL 325 523 0 266 211 189 21 chr13 22492873 22492968 -79380201 - MIR SINE MIR -79 129 19 262 227 160 0 chr13 22493104 22493179 -79379990 + Charlie8 DNA MER1_type 129 215 -2202 23 54 0 0 chr13 22493581 22493618 -79379551 + AT_rich Low_complexity Low_complexity 1 37 0 2249 114 3 0 chr13 22493703 22494009 -79379160 + AluSg SINE Alu 1 307 -3 264 271 105 38 chr13 22494011 22494144 -79379025 - MIR SINE MIR -108 154 13 281 149 0 21 chr13 22494987 22495034 -79378135 + MIR SINE MIR 102 147 -61 1272 178 0 9 chr13 22496731 22496961 -79376208 + AluJo SINE Alu 84 311 -1 706 194 76 0 chr13 22496982 22497126 -79376043 + L1PB4 LINE L1 6000 6154 -2 2179 97 0 7 chr13 22497147 22497456 -79375713 + AluSx SINE Alu 1 307 0 290 220 68 61 chr13 22497781 22497913 -79375256 + MIR SINE MIR 63 195 -67 186 43 0 0 chr13 22497913 22497936 -79375233 + (TG)n Simple_repeat Simple_repeat 2 24 0 2317 75 4 0 chr13 22498747 22499058 -79374111 + AluSq SINE Alu 1 312 0 32 56 0 14 chr13 22499234 22499285 -79373884 + AT_rich Low_complexity Low_complexity 1 52 -18 2007 177 33 3 chr13 22499285 22499619 -79373550 - MER2 DNA MER2_type 0 344 1 32 56 0 14 chr13 22499619 22499638 -79373531 + AT_rich Low_complexity Low_complexity 52 70 0 1615 152 21 128 chr13 22500123 22500369 -79372800 - MLT1B LTR MaLR -7 383 201 1703 184 7 3 chr13 22500369 22500674 -79372495 - AluJo SINE Alu -6 306 1 1615 152 21 128 chr13 22500674 22500856 -79372313 - MLT1B LTR MaLR -189 201 1 283 368 60 8 chr13 22501216 22501333 -79371836 - MIR3 SINE MIR -84 124 2 1937 185 81 27 chr13 22502757 22502948 -79370221 + MLT1C LTR MaLR 1 180 -287 1894 156 10 10 chr13 22502948 22503243 -79369926 + AluJb SINE Alu 1 295 -17 1937 185 81 27 chr13 22503243 22503266 -79369903 + MLT1C LTR MaLR 180 200 -267 219 69 0 0 chr13 22503266 22503295 -79369874 + (CA)n Simple_repeat Simple_repeat 2 30 0 1937 185 81 27 chr13 22503295 22503522 -79369647 + MLT1C LTR MaLR 200 467 0 225 108 0 0 chr13 22504341 22504378 -79368791 + (TG)n Simple_repeat Simple_repeat 2 38 0 2251 132 6 9 chr13 22505079 22505419 -79367750 + MER1B DNA MER1_type 1 339 0 2278 113 3 0 chr13 22506246 22506555 -79366614 + AluSp SINE Alu 1 310 -3 595 254 0 8 chr13 22506756 22506886 -79366283 - MER3 DNA MER1_type -80 129 1 2913 3 0 0 chr13 22506936 22507246 -79365923 + AluYa5 SINE Alu 1 310 -1 1081 179 17 101 chr13 22508405 22508663 -79364506 + MER33 DNA MER1_type 6 229 -2356 1782 169 0 17 chr13 22508663 22508964 -79364205 - AluJo SINE Alu -16 296 1 1081 179 17 101 chr13 22508964 22509051 -79364118 + MER33 DNA MER1_type 229 322 -2 344 318 104 65 chr13 22510757 22510875 -79362294 + L2 LINE L2 2912 3024 -289 722 183 27 70 chr13 22510875 22511061 -79362108 + MER5B DNA MER1_type 1 178 0 344 318 104 65 chr13 22511061 22511326 -79361843 + L2 LINE L2 3024 3310 -3 2478 93 0 0 chr13 22515607 22515918 -79357251 + AluSx SINE Alu 2 312 0 209 59 59 0 chr13 22516217 22516251 -79356918 + GA-rich Low_complexity Low_complexity 5 40 0 440 293 48 6 chr13 22518210 22518377 -79354792 + MLT1J2 LTR MaLR 3 176 -274 270 251 61 25 chr13 22518465 22518589 -79354580 + MLT1J1 LTR MaLR 290 418 -28 620 290 71 44 chr13 22518904 22519077 -79354092 - MIR SINE MIR 0 262 78 2312 93 0 3 chr13 22519077 22519379 -79353790 + AluSg1 SINE Alu 1 301 -8 620 290 71 44 chr13 22519379 22519457 -79353712 - MIR SINE MIR -184 78 4 648 158 7 96 chr13 22519870 22520016 -79353153 - FLAM_A SINE Alu 0 133 1 1751 251 46 2 chr13 22520117 22520642 -79352527 - L1ME3A LINE L1 -12 6158 5611 539 268 0 8 chr13 22522664 22522787 -79350382 + L2 LINE L2 3191 3312 -1 30 0 0 0 chr13 22525434 22525464 -79347705 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 22526112 22526134 -79347035 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 22526279 22526309 -79346860 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 22527876 22527902 -79345267 + AT_rich Low_complexity Low_complexity 1 26 0 2116 117 47 3 chr13 22528746 22529045 -79344124 + AluSp SINE Alu 1 312 -1 2676 76 8 24 chr13 22529190 22529571 -79343598 - THE1C LTR MaLR 0 375 1 1142 165 0 0 chr13 22529851 22530027 -79343142 - AluSq SINE Alu -9 304 129 261 370 101 21 chr13 22530125 22530452 -79342717 - L2 LINE L2 -409 2905 2553 2774 207 84 26 chr13 22531334 22532260 -79340909 - L1ME1 LINE L1 -3 6163 5190 541 250 0 0 chr13 22532277 22532389 -79340780 - FLAM_A SINE Alu -18 115 4 1761 202 9 40 chr13 22532416 22532639 -79340530 - L1MB4 LINE L1 0 6180 5975 2446 90 3 0 chr13 22532639 22532951 -79340218 - AluSp SINE Alu 0 313 1 1761 202 9 40 chr13 22532951 22533157 -79340012 - L1MB4 LINE L1 -205 5975 5764 1242 183 10 29 chr13 22533183 22533495 -79339674 - L1ME1 LINE L1 -985 5161 4856 5794 229 85 16 chr13 22533517 22534172 -79338997 - L1ME1 LINE L1 -1794 4352 3743 2291 140 37 57 chr13 22534172 22534608 -79338561 + MSTA LTR MaLR 2 428 0 5794 229 85 16 chr13 22534608 22536031 -79337138 - L1ME1 LINE L1 -2403 3743 2131 1537 288 19 19 chr13 22536088 22536554 -79336615 + L2 LINE L2 1750 2215 -1099 671 293 79 27 chr13 22536555 22536976 -79336193 + LTR16A LTR ERVL 1 450 0 5503 87 93 0 chr13 22536994 22537750 -79335419 + LTR12 LTR ERV1 1 826 0 1053 58 0 0 chr13 22537750 22537883 -79335286 + LTR12 LTR ERV1 582 714 0 1353 268 39 88 chr13 22537890 22538334 -79334835 + L2 LINE L2 2235 2699 -614 1314 161 99 68 chr13 22538334 22538688 -79334481 + MLT1A1 LTR MaLR 1 365 0 1353 268 39 88 chr13 22538688 22539276 -79333893 + L2 LINE L2 2699 3302 -11 186 103 0 0 chr13 22539276 22539305 -79333864 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 520 336 129 4 chr13 22540607 22540839 -79332330 - MIR SINE MIR -1 261 1 4030 209 86 34 chr13 22540977 22541206 -79331963 + Charlie1a DNA MER1_type 70 286 -2475 2863 22 0 0 chr13 22541206 22541522 -79331647 + AluYb8 SINE Alu 1 316 -2 4030 209 86 34 chr13 22541522 22542605 -79330564 + Charlie1a DNA MER1_type 286 1451 -4 2181 168 30 5 chr13 22543642 22544046 -79329123 + MSTA LTR MaLR 3 416 -12 2496 51 3 0 chr13 22544053 22544348 -79328821 + AluY SINE Alu 1 296 -15 8612 170 33 14 chr13 22544363 22545981 -79327188 + MSTA-int LTR MaLR 2 1651 0 2655 123 28 14 chr13 22545981 22546403 -79326766 + MSTA LTR MaLR 1 428 0 559 260 0 8 chr13 22546779 22546906 -79326263 + FLAM_C SINE Alu 1 126 -17 1454 160 13 78 chr13 22547046 22547155 -79326014 - AluJo SINE Alu -25 287 172 2219 126 30 38 chr13 22547155 22547521 -79325648 + THE1B LTR MaLR 2 364 0 1454 160 13 78 chr13 22547521 22547718 -79325451 - AluJo SINE Alu -140 172 1 1722 179 4 4 chr13 22547959 22548239 -79324930 - AluJb SINE Alu -26 286 7 2331 105 3 0 chr13 22548256 22548561 -79324608 - AluSq SINE Alu -7 306 1 228 329 147 59 chr13 22548962 22549132 -79324037 + MIR3 SINE MIR 11 195 -13 210 118 0 0 chr13 22549352 22549386 -79323783 + (TC)n Simple_repeat Simple_repeat 1 34 0 1526 192 17 79 chr13 22549430 22549837 -79323332 + MSTD LTR MaLR 1 382 -14 4443 232 63 31 chr13 22549842 22550143 -79323026 + MSTD-int LTR MaLR 2 292 -1443 1736 151 100 6 chr13 22550143 22550474 -79322695 + MER47A DNA MER2_type 2 363 -3 4443 232 63 31 chr13 22550474 22551412 -79321757 + MSTD-int LTR MaLR 292 1281 -454 1012 231 78 11 chr13 22551413 22551681 -79321488 + MSTD LTR MaLR 104 389 -7 379 313 76 8 chr13 22553038 22553169 -79320000 - MIR SINE MIR -76 186 47 491 176 20 0 chr13 22553547 22553649 -79319520 - U13 snRNA snRNA 0 104 1 192 179 13 115 chr13 22556710 22556788 -79316381 - L2 LINE L2 -61 3252 3183 350 179 26 13 chr13 22557121 22557199 -79315970 - MER116 DNA Mariner -1 79 1 198 0 0 0 chr13 22558353 22558375 -79314794 + (TG)n Simple_repeat Simple_repeat 1 22 0 430 199 71 50 chr13 22559362 22559476 -79313693 + L1ME4a LINE L1 5726 5845 -276 2016 129 3 49 chr13 22559476 22559802 -79313367 + AluSp SINE Alu 2 312 -1 430 199 71 50 chr13 22559802 22559828 -79313341 + L1ME4a LINE L1 5845 5869 -252 316 250 71 0 chr13 22559897 22560009 -79313160 + L1ME4a LINE L1 5998 6117 -4 228 314 91 58 chr13 22560318 22560439 -79312730 - L2 LINE L2 0 3272 3148 795 168 0 0 chr13 22560592 22560729 -79312440 - MER3 DNA MER1_type -6 203 67 184 297 31 16 chr13 22562237 22562301 -79310868 - L3b LINE CR1 -226 1357 1293 1911 135 7 7 chr13 22562600 22562882 -79310287 + AluJb SINE Alu 1 282 -30 406 325 70 6 chr13 22562989 22563146 -79310023 - MIR3 SINE MIR -18 190 24 2084 153 34 3 chr13 22564120 22564474 -79308695 - MLT1A1 LTR MaLR 0 365 1 996 110 7 0 chr13 22564542 22564678 -79308491 - AluSp SINE Alu -163 150 14 401 40 0 0 chr13 22564678 22564728 -79308441 - AluY SINE Alu -260 50 1 229 348 0 0 chr13 22564970 22565039 -79308130 - MIR SINE MIR -109 153 85 464 310 91 22 chr13 22566342 22566581 -79306588 + MIR SINE MIR 2 262 0 362 298 104 42 chr13 22568109 22568418 -79304751 - L2 LINE L2 -844 2470 2143 546 302 146 62 chr13 22568770 22568938 -79304231 + L2 LINE L2 1947 2099 -1215 2085 147 3 0 chr13 22568938 22569231 -79303938 - AluSx SINE Alu -16 296 3 546 302 146 62 chr13 22569231 22569728 -79303441 + L2 LINE L2 2099 2668 -646 395 350 68 39 chr13 22569759 22570070 -79303099 + L2 LINE L2 2933 3252 -61 354 362 87 0 chr13 22571642 22571769 -79301400 + L2 LINE L2 3122 3259 -13 234 130 74 0 chr13 22572192 22572246 -79300923 - MLT2B1 LTR ERVL 0 520 463 349 344 86 16 chr13 22572485 22572613 -79300556 + L2 LINE L2 3123 3259 -13 303 255 57 57 chr13 22572689 22572795 -79300374 + L2 LINE L2 3192 3297 -16 25 0 0 0 chr13 22574514 22574539 -79298630 + AT_rich Low_complexity Low_complexity 1 25 0 964 110 0 0 chr13 22574569 22574696 -79298473 + FLAM_C SINE Alu 1 127 -16 354 323 126 6 chr13 22575735 22575902 -79297267 + MER5A DNA MER1_type 3 189 0 273 297 53 90 chr13 22575921 22576187 -79296982 + L2 LINE L2 3004 3259 -13 186 71 0 0 chr13 22577486 22577514 -79295655 + (TG)n Simple_repeat Simple_repeat 1 28 0 2154 104 0 7 chr13 22577938 22578235 -79294934 + AluSx SINE Alu 1 295 -17 185 366 47 91 chr13 22579581 22579920 -79293249 + L2 LINE L2 2946 3269 -3 21 0 0 0 chr13 22580734 22580755 -79292414 + AT_rich Low_complexity Low_complexity 1 21 0 187 250 0 0 chr13 22581040 22581076 -79292093 + L2 LINE L2 3222 3257 -15 3495 158 46 3 chr13 22582815 22583429 -79289740 - LTR48B LTR ERV1 -4 640 1 241 298 0 0 chr13 22583527 22583584 -79289585 - L2 LINE L2 0 3313 3257 233 382 10 10 chr13 22584195 22584297 -79288872 - MIR SINE MIR -149 113 12 256 291 130 72 chr13 22584916 22585277 -79287892 - L3 LINE CR1 -45 1532 1151 21 0 0 0 chr13 22587435 22587456 -79285713 + AT_rich Low_complexity Low_complexity 1 21 0 276 256 204 64 chr13 22588063 22588235 -79284934 + MIR SINE MIR 6 201 -61 4498 104 2 3 chr13 22589383 22590024 -79283145 + L1PA15 LINE L1 5526 6165 0 269 283 0 47 chr13 22591451 22591557 -79281612 + A-rich Low_complexity Low_complexity 4 104 0 461 71 14 0 chr13 22591585 22591655 -79281514 + (CA)n Simple_repeat Simple_repeat 2 72 0 1850 150 14 7 chr13 22592226 22592520 -79280649 - AluJb SINE Alu -16 296 1 195 42 0 0 chr13 22592650 22592674 -79280495 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 423 252 61 0 chr13 22593112 22593243 -79279926 - L1ME1 LINE L1 -2 6164 6026 1792 212 62 3 chr13 22593311 22593835 -79279334 - L1ME1 LINE L1 -530 5636 5058 2214 109 0 10 chr13 22593835 22594138 -79279031 + AluSx SINE Alu 1 300 -12 1792 212 62 3 chr13 22594138 22594355 -79278814 - L1ME1 LINE L1 -1108 5058 4855 345 277 37 0 chr13 22594354 22594479 -79278690 - L1ME1 LINE L1 -2273 3873 3729 * 791 197 0 0 chr13 22595781 22595928 -79277241 - MLT1A1 LTR MaLR -48 317 171 2553 61 0 0 chr13 22596278 22596588 -79276581 - AluSx SINE Alu -2 310 1 2429 87 0 6 chr13 22597574 22597885 -79275284 - AluSc SINE Alu 0 309 1 910 229 94 0 chr13 22598041 22598329 -79274840 + L1MC4 LINE L1 7728 8042 0 2252 125 117 5 chr13 22598366 22598751 -79274418 + MSTA LTR MaLR 1 428 0 256 180 0 0 chr13 22599674 22599718 -79273451 - MER58A DNA MER1_type 0 224 181 496 220 85 0 chr13 22599718 22599836 -79273333 - MER58A DNA MER1_type 0 128 1 619 184 18 0 chr13 22600172 22600286 -79272883 - Tigger3(Golem) DNA MER2_type 0 3034 2919 401 235 0 0 chr13 22600292 22600373 -79272796 - Tigger3(Golem) DNA MER2_type -2948 81 1 702 101 0 18 chr13 22600922 22601031 -79272138 - L1PA8 LINE L1 0 6172 6066 307 326 0 0 chr13 22601480 22601569 -79271600 - L1MC4 LINE L1 -1339 6703 6615 225 154 0 0 chr13 22601569 22601608 -79271561 + (CA)n Simple_repeat Simple_repeat 1 39 0 441 0 0 0 chr13 22601980 22602029 -79271140 + (CA)n Simple_repeat Simple_repeat 2 50 0 180 163 0 0 chr13 22602092 22602135 -79271034 + A-rich Low_complexity Low_complexity 5 47 0 182 274 20 0 chr13 22602740 22602791 -79270378 + MIR SINE MIR 95 146 -62 1602 169 30 0 chr13 22605346 22605612 -79267557 + AluJo SINE Alu 1 274 -38 451 259 89 44 chr13 22605712 22605870 -79267299 + MIR SINE MIR 90 254 -8 200 86 29 0 chr13 22605875 22605910 -79267259 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 257 247 37 0 chr13 22606337 22606418 -79266751 - MER58C DNA MER1_type -10 205 122 380 253 19 2 chr13 22606440 22606582 -79266587 - MER58 DNA MER1_type -71 144 2 1254 182 0 4 chr13 22606591 22606816 -79266353 + MER58A DNA MER1_type 1 224 0 401 298 11 0 chr13 22607878 22607972 -79265197 + L2 LINE L2 3158 3252 -20 567 66 0 0 chr13 22607975 22608051 -79265118 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 496 363 109 11 chr13 22608258 22608624 -79264545 + L3 LINE CR1 179 580 -997 1620 203 10 13 chr13 22608979 22609290 -79263879 - AluJo SINE Alu -2 310 1 304 200 57 9 chr13 22609358 22609463 -79263706 + (TATAA)n Simple_repeat Simple_repeat 3 112 0 186 171 0 0 chr13 22609601 22609642 -79263527 + (TG)n Simple_repeat Simple_repeat 1 41 0 4960 151 159 0 chr13 22609987 22610867 -79262302 + LTR28 LTR ERV1 1 1020 0 369 0 0 0 chr13 22611135 22611176 -79261993 + (TG)n Simple_repeat Simple_repeat 2 42 0 3301 197 49 48 chr13 22612265 22612646 -79260523 + L1MB3 LINE L1 4344 4723 -1460 853 159 0 36 chr13 22612646 22612784 -79260385 + FLAM_C SINE Alu 1 133 0 3301 197 49 48 chr13 22612784 22613757 -79259412 + L1MB3 LINE L1 4723 5706 -477 994 103 0 109 chr13 22613758 22613978 -79259191 - AluSg/x SINE Alu 0 329 129 21 36 0 0 chr13 22613982 22614010 -79259159 + AT_rich Low_complexity Low_complexity 1 28 0 1042 63 8 0 chr13 22614014 22614140 -79259029 + AluSg SINE Alu 1 127 -183 2053 169 16 0 chr13 22614140 22614507 -79258662 + L1MB3 LINE L1 5702 6074 -109 1025 236 24 11 chr13 22614519 22614700 -79258469 - L1MC4 LINE L1 -538 7504 7327 2004 164 0 0 chr13 22614700 22615010 -79258159 - AluSx SINE Alu -2 310 1 1025 236 24 11 chr13 22615010 22615279 -79257890 - L1MC4 LINE L1 -715 7327 6855 338 89 0 54 chr13 22615345 22615401 -79257768 - L1MB3 LINE L1 -219 5964 5912 189 0 0 0 chr13 22615447 22615468 -79257701 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 369 0 0 0 chr13 22615467 22615508 -79257661 + (TG)n Simple_repeat Simple_repeat 2 42 0 1688 168 3 7 chr13 22615508 22615793 -79257376 - AluJo SINE Alu -28 284 1 335 273 0 0 chr13 22615875 22615952 -79257217 + Charlie8 DNA MER1_type 2336 2412 -5 807 272 99 23 chr13 22616511 22617053 -79256116 - L1ME LINE L1 -391 5771 5181 476 237 20 40 chr13 22617062 22617214 -79255955 + L2 LINE L2 3165 3313 0 17117 171 45 14 chr13 22617248 22618633 -79254536 - L1PBa LINE L1 -1538 5324 3983 362 21 0 21 chr13 22618633 22618681 -79254488 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 17117 171 45 14 chr13 22618681 22620640 -79252529 - L1PBa LINE L1 -2879 3983 2086 2131 94 14 3 chr13 22620640 22620928 -79252241 + AluSq SINE Alu 1 291 -22 17117 171 45 14 chr13 22620928 22622747 -79250422 - L1PBa LINE L1 -4776 2086 1 687 167 40 16 chr13 22623199 22623325 -79249844 + FLAM_C SINE Alu 5 133 0 2454 208 58 21 chr13 22623402 22623973 -79249196 - L1MD3 LINE L1 0 7995 7404 274 263 13 13 chr13 22623973 22624049 -79249120 - MLT1F1 LTR MaLR -442 125 50 239 91 0 0 chr13 22624076 22624109 -79249060 - L1MD3 LINE L1 -879 7116 7084 2435 95 0 0 chr13 22624115 22624420 -79248749 - AluSq SINE Alu -8 305 1 23 54 0 0 chr13 22624832 22624869 -79248300 + AT_rich Low_complexity Low_complexity 1 37 0 2347 102 0 9 chr13 22625463 22625778 -79247391 - AluSq SINE Alu -1 312 1 703 283 19 38 chr13 22626194 22626352 -79246817 - MIR SINE MIR 0 262 107 2457 133 11 22 chr13 22626352 22626720 -79246449 - THE1B LTR MaLR 0 364 1 703 283 19 38 chr13 22626720 22626773 -79246396 - MIR SINE MIR -155 107 55 2160 151 6 12 chr13 22627545 22627890 -79245279 + MLT1A1 LTR MaLR 1 343 -22 430 98 0 16 chr13 22627930 22627991 -79245178 - MADE1 DNA Mariner -20 60 1 214 213 13 13 chr13 22630075 22630150 -79243019 + CT-rich Low_complexity Low_complexity 2 76 0 1522 116 3 99 chr13 22630420 22630713 -79242456 - AluSx SINE Alu 0 312 48 26 50 0 0 chr13 22631111 22631151 -79242018 + AT_rich Low_complexity Low_complexity 1 40 0 2400 66 0 0 chr13 22631700 22631988 -79241181 + AluY SINE Alu 24 311 0 261 295 9 38 chr13 22632744 22632849 -79240320 - MLT1L LTR MaLR -164 451 350 264 182 26 65 chr13 22632897 22632927 -79240242 - MLT1J2 LTR MaLR -317 133 103 4204 165 48 69 chr13 22632927 22633431 -79239738 - MER21A LTR ERV1 0 931 418 2058 112 4 0 chr13 22633431 22633733 -79239436 - AluSx SINE Alu 0 308 6 4204 165 48 69 chr13 22633733 22633744 -79239425 - MER21A LTR ERV1 -513 418 408 219 36 0 0 chr13 22633744 22633772 -79239397 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 4204 165 48 69 chr13 22633772 22634205 -79238964 - MER21A LTR ERV1 -523 408 1 264 182 26 65 chr13 22634205 22634251 -79238918 - MLT1J2 LTR MaLR -347 103 60 276 268 0 12 chr13 22634644 22634726 -79238443 - MLT1L LTR MaLR -2 613 533 260 268 181 39 chr13 22635355 22635482 -79237687 + MIR3 SINE MIR 36 180 -28 740 173 100 20 chr13 22636360 22636510 -79236659 - MER20 DNA MER1_type -23 196 35 282 180 0 0 chr13 22637070 22637131 -79236038 + GA-rich Low_complexity Low_complexity 2 62 0 209 200 20 0 chr13 22637727 22637777 -79235392 + G-rich Low_complexity Low_complexity 4 54 0 21 0 0 0 chr13 22637827 22637848 -79235321 + GC_rich Low_complexity Low_complexity 1 21 0 2253 70 0 7 chr13 22642135 22642453 -79230716 + AluY SINE Alu 1 316 0 835 206 106 12 chr13 22644436 22644606 -79228563 - MER5A DNA MER1_type 0 189 4 223 113 75 0 chr13 22644831 22644884 -79228285 + (TA)n Simple_repeat Simple_repeat 1 57 0 2018 133 17 0 chr13 22645400 22645693 -79227476 + AluSx SINE Alu 2 299 -13 18323 33 4 1 chr13 22645842 22648705 -79224464 - L1PA4 LINE L1 0 6155 3304 2163 130 0 0 chr13 22648879 22649178 -79223991 - AluSq SINE Alu -14 299 1 326 305 54 24 chr13 22649201 22649368 -79223801 - MER5A DNA MER1_type -15 174 3 496 242 12 50 chr13 22650579 22650740 -79222429 + MER103 DNA DNA 1 155 -11 2145 102 27 14 chr13 22651583 22651876 -79221293 + AluSg SINE Alu 1 297 -13 399 196 152 0 chr13 22652421 22652533 -79220636 - MER103 DNA DNA -33 133 5 349 316 128 30 chr13 22652653 22652786 -79220383 - L2 LINE L2 -18 3254 3109 1193 280 78 39 chr13 22652905 22653391 -79219778 + LTR33A LTR ERVL 19 523 0 2268 114 0 0 chr13 22653819 22654117 -79219052 - AluSq SINE Alu -15 298 1 206 350 120 10 chr13 22654206 22654406 -79218763 - L2 LINE L2 -638 2676 2455 622 199 152 18 chr13 22655152 22655323 -79217846 - MER57A LTR ERV1 -4 399 206 24 77 0 0 chr13 22655324 22655376 -79217793 + AT_rich Low_complexity Low_complexity 1 52 0 2237 74 60 0 chr13 22656447 22656732 -79216437 - AluSp SINE Alu -11 302 1 306 279 171 66 chr13 22656749 22657176 -79215993 - L2 LINE L2 0 3313 2842 2003 153 3 7 chr13 22657516 22657824 -79215345 + AluJb SINE Alu 1 307 -5 304 270 112 0 chr13 22657898 22657987 -79215182 + L2 LINE L2 3134 3232 -40 223 388 29 15 chr13 22658807 22659013 -79214156 - L2 LINE L2 -874 2440 2232 211 176 0 0 chr13 22659428 22659462 -79213707 + polypyrimidine Low_complexity Low_complexity 3 36 0 255 288 128 71 chr13 22660103 22660329 -79212840 + MIR SINE MIR 22 260 -2 328 259 12 12 chr13 22660344 22660425 -79212744 - L2 LINE L2 -13 3300 3220 285 293 113 82 chr13 22661745 22662177 -79210992 + L2 LINE L2 2632 3090 -182 1875 128 7 38 chr13 22663063 22663352 -79209817 + AluSx SINE Alu 14 293 -19 233 255 167 59 chr13 22663902 22664004 -79209165 + L2 LINE L2 3201 3313 0 469 176 0 0 chr13 22664065 22664139 -79209030 - MER45A DNA AcHobo 0 178 105 1162 173 14 34 chr13 22664139 22664347 -79208822 + AluJo SINE Alu 87 290 -22 249 118 0 0 chr13 22664347 22664381 -79208788 - MER45A DNA AcHobo -66 112 79 2042 126 10 0 chr13 22665908 22666201 -79206968 - AluSx SINE Alu -16 296 1 2507 63 0 3 chr13 22666490 22666790 -79206379 - AluY SINE Alu -12 299 1 268 369 150 6 chr13 22666797 22666957 -79206212 - MIR SINE MIR -76 186 4 2051 119 58 73 chr13 22767645 22768058 -79105111 - MLT2D LTR ERVL -6 408 2 400 288 118 26 chr13 22768065 22768371 -79104798 - MER93a LTR ERV1 -11 391 58 703 265 38 93 chr13 22768468 22768759 -79104410 - MLT1E LTR MaLR -88 505 231 1991 128 24 0 chr13 22769071 22769360 -79103809 - AluSx SINE Alu -16 296 1 1965 156 30 0 chr13 22769468 22769802 -79103367 + MSTB LTR MaLR 1 344 -82 2446 70 0 3 chr13 22772117 22772429 -79100740 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 22772677 22772698 -79100471 + AT_rich Low_complexity Low_complexity 1 21 0 317 173 62 0 chr13 22772904 22772985 -79100184 - L1MB4 LINE L1 -2 6178 6093 4732 130 2 1 chr13 22773007 22773905 -79099264 - L1MA4 LINE L1 -289 6011 5113 3335 173 30 7 chr13 22773910 22774639 -79098530 + L1MA4 LINE L1 4336 5081 -1065 242 346 8 60 chr13 22774712 22774845 -79098324 + MIR SINE MIR 49 174 -88 31 26 0 0 chr13 22776168 22776206 -79096963 + AT_rich Low_complexity Low_complexity 1 38 0 307 71 0 0 chr13 22776208 22776250 -79096919 - Alu SINE Alu -8 292 251 2043 105 4 0 chr13 22776250 22776526 -79096643 - AluSx SINE Alu -35 277 1 196 238 0 0 chr13 22776643 22776685 -79096484 + MIR SINE MIR 103 144 -64 2341 70 6 22 chr13 22776971 22777287 -79095882 - AluY SINE Alu 0 311 1 694 251 17 17 chr13 22779883 22780058 -79093111 + MIR SINE MIR 88 262 0 226 272 44 44 chr13 22780766 22780880 -79092289 - LTR33 LTR ERVL -384 137 24 2389 85 0 3 chr13 22780978 22781285 -79091884 - AluSx SINE Alu -6 306 1 211 133 67 0 chr13 22782805 22782878 -79090291 + A-rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr13 22783715 22783736 -79089433 + AT_rich Low_complexity Low_complexity 1 21 0 38401 69 7 4 chr13 22783741 22789876 -79083293 - L1PA5 LINE L1 -3 6151 2 2690 156 25 18 chr13 22790512 22791173 -79081996 + MER72 LTR ERV1 1 722 0 360 269 78 60 chr13 22794313 22794581 -79078588 + MARNA DNA Mariner 287 559 -27 246 314 69 29 chr13 22794715 22794817 -79078352 + MIR SINE MIR 26 131 -77 935 188 30 10 chr13 22796097 22796294 -79076875 - LTR40a LTR ERVL -1 518 318 332 331 39 0 chr13 22796288 22796466 -79076703 + MLT1L LTR MaLR 431 615 0 * 942 309 140 50 chr13 22796469 22797217 -79075952 - L2 LINE L2 -676 2638 1823 345 381 67 3 chr13 22797613 22797973 -79075196 + L2 LINE L2 1713 2095 -1219 321 303 28 67 chr13 22799942 22800120 -79073049 - L2 LINE L2 -420 2894 2724 740 234 126 14 chr13 22801116 22801338 -79071831 - MIR SINE MIR -10 252 6 2502 272 140 20 chr13 22801738 22802666 -79070503 + L2 LINE L2 1264 2302 -1012 275 250 0 24 chr13 22802745 22802829 -79070340 + MLT1L LTR MaLR 2 83 -532 1117 152 29 3 chr13 22802859 22803194 -79069975 - MSTB1 LTR MaLR 0 432 1 774 262 88 25 chr13 22803197 22803639 -79069530 + MLT1L LTR MaLR 124 593 -22 410 196 10 0 chr13 22803937 22804039 -79069130 + CT-rich Low_complexity Low_complexity 3 105 0 788 308 97 31 chr13 22804296 22804896 -79068273 - L2 LINE L2 -2 3311 2672 742 216 66 62 chr13 22804897 22805138 -79068031 - MLT1D LTR MaLR -261 244 3 222 37 0 0 chr13 22805153 22805180 -79067989 + (GA)n Simple_repeat Simple_repeat 1 27 0 1695 186 3 32 chr13 22805233 22805545 -79067624 - AluJb SINE Alu -9 303 1 606 243 44 0 chr13 22805745 22805881 -79067288 + L2 LINE L2 3172 3313 0 1608 188 33 23 chr13 22806573 22806877 -79066292 + AluJo SINE Alu 3 309 -3 261 194 14 0 chr13 22807645 22807717 -79065452 + L1MC2 LINE L1 6261 7779 -6 24 32 0 0 chr13 22808144 22808175 -79064994 + AT_rich Low_complexity Low_complexity 1 31 0 375 242 50 72 chr13 22808579 22808759 -79064410 + L1ME4a LINE L1 5219 5387 -873 2301 112 0 0 chr13 22808759 22809062 -79064107 - AluSx SINE Alu -9 303 1 375 242 50 72 chr13 22809062 22809174 -79063995 + L1ME4a LINE L1 5387 5500 -760 227 252 38 30 chr13 22809470 22809601 -79063568 + L1ME4a LINE L1 5813 5944 -177 183 268 169 0 chr13 22810778 22810849 -79062320 - MIR SINE MIR -91 117 35 22 0 0 0 chr13 22811272 22811294 -79061875 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 22811774 22811801 -79061368 + AT_rich Low_complexity Low_complexity 1 27 0 181 222 0 0 chr13 22812397 22812433 -79060736 + L2 LINE L2 3218 3253 -19 504 206 21 7 chr13 22812437 22812578 -79060591 + GA-rich Low_complexity Low_complexity 3 145 0 2345 107 0 3 chr13 22813417 22813726 -79059443 + AluSx SINE Alu 1 308 -4 2011 127 23 13 chr13 22813879 22814187 -79058982 - AluSx SINE Alu -1 311 1 632 259 63 44 chr13 22814188 22814393 -79058776 - MIR SINE MIR -1 261 53 409 292 65 18 chr13 22815701 22815869 -79057300 + MIR SINE MIR 73 248 -14 186 295 49 16 chr13 22816780 22816841 -79056328 - L2 LINE L2 -12 3301 3239 376 303 74 55 chr13 22817625 22817935 -79055234 - LTR33 LTR ERVL 0 521 206 280 267 40 0 chr13 22817966 22818067 -79055102 - LTR33 LTR ERVL -413 108 4 248 249 56 129 chr13 22818121 22818354 -79054815 + L1M4 LINE L1 8 223 -6319 5217 233 49 23 chr13 22818629 22822341 -79050828 + L1M4 LINE L1 539 4428 -2216 314 303 25 76 chr13 22822360 22822558 -79050611 - MIR SINE MIR -14 248 61 210 91 0 0 chr13 22823632 22823665 -79049504 + (TC)n Simple_repeat Simple_repeat 1 33 0 2026 114 23 16 chr13 22823665 22823971 -79049198 - AluSc SINE Alu -1 308 1 23 0 0 0 chr13 22825288 22825311 -79047858 + AT_rich Low_complexity Low_complexity 1 23 0 2366 77 0 3 chr13 22825831 22826128 -79047041 - AluSp SINE Alu -17 296 1 862 201 53 46 chr13 22826586 22826746 -79046423 + L1MC4 LINE L1 7756 7920 -122 420 20 0 0 chr13 22826746 22826795 -79046374 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 862 201 53 46 chr13 22826795 22826917 -79046252 + L1MC4 LINE L1 7920 8040 -2 421 294 127 27 chr13 22827301 22827522 -79045647 - MIR SINE MIR -17 245 3 210 309 0 0 chr13 22827551 22827606 -79045563 - L2 LINE L2 -9 3263 3209 460 319 38 6 chr13 22827817 22827974 -79045195 - MIR3 SINE MIR -9 199 38 255 114 0 0 chr13 22828110 22828154 -79045015 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 33 0 0 chr13 22828675 22828705 -79044464 + (TG)n Simple_repeat Simple_repeat 1 30 0 1093 220 95 79 chr13 22829637 22830153 -79043016 - MER39 LTR ERV1 0 707 1 279 295 116 23 chr13 22830724 22830853 -79042316 - MIR3 SINE MIR -37 171 31 234 234 31 0 chr13 22831820 22831884 -79041285 + L1ME3A LINE L1 5929 5994 -176 872 148 7 7 chr13 22832141 22832276 -79040893 + FRAM SINE Alu 11 145 -31 21 0 0 0 chr13 22832439 22832460 -79040709 + AT_rich Low_complexity Low_complexity 1 21 0 2016 219 86 2 chr13 22833485 22833951 -79039218 + MLT1D LTR MaLR 1 505 0 715 209 0 0 chr13 22835124 22835258 -79037911 - FLAM_C SINE Alu -9 134 1 302 238 299 7 chr13 22835630 22835777 -79037392 + MIR3 SINE MIR 13 202 -6 2334 141 20 66 chr13 22837139 22837627 -79035542 - MER31B LTR ERV1 0 466 1 2411 82 0 3 chr13 22838027 22838332 -79034837 + AluSx SINE Alu 1 304 -8 210 266 97 0 chr13 22838381 22838475 -79034694 + MIR SINE MIR 50 154 -108 235 214 0 54 chr13 22838885 22838941 -79034228 + L2 LINE L2 3220 3272 0 24 0 0 0 chr13 22839092 22839116 -79034053 + AT_rich Low_complexity Low_complexity 1 24 0 1395 167 0 0 chr13 22839125 22839341 -79033828 - AluJb SINE Alu -10 302 87 840 255 111 15 chr13 22839421 22839692 -79033477 - L2 LINE L2 -4 3309 3013 505 294 92 14 chr13 22839932 22840150 -79033019 - L2 LINE L2 -345 2969 2735 390 21 0 0 chr13 22840158 22840205 -79032964 + (TG)n Simple_repeat Simple_repeat 2 48 0 1793 228 79 45 chr13 22840205 22840736 -79032433 - MLT2B3 LTR ERVL -5 549 1 2771 166 2 44 chr13 22840737 22841127 -79032042 - L1MB3 LINE L1 -10 6173 5813 411 43 0 43 chr13 22841127 22841196 -79031973 + (TA)n Simple_repeat Simple_repeat 1 66 0 2771 166 2 44 chr13 22841196 22841373 -79031796 - L1MB3 LINE L1 -370 5813 5630 534 250 323 0 chr13 22841373 22841605 -79031564 - L2 LINE L2 -563 2751 2445 183 42 0 0 chr13 22841814 22841838 -79031331 + (TG)n Simple_repeat Simple_repeat 2 25 0 356 260 208 0 chr13 22842226 22842380 -79030789 - MIR SINE MIR -7 255 70 209 264 56 28 chr13 22843803 22843875 -79029294 + MIR3 SINE MIR 81 154 -54 240 330 93 35 chr13 22843902 22844299 -79028870 - LTR67 LTR ERVL -3 554 135 672 246 7 115 chr13 22845395 22845683 -79027486 + L2 LINE L2 3055 3311 -2 264 30 0 0 chr13 22846140 22846173 -79026996 + (TG)n Simple_repeat Simple_repeat 2 34 0 488 269 81 75 chr13 22846740 22847100 -79026069 - HAL1 LINE L1 -863 1644 1283 600 291 118 62 chr13 22847155 22847801 -79025368 - HAL1 LINE L1 -1778 729 48 303 209 0 45 chr13 22848117 22848184 -79024985 - L2 LINE L2 0 3313 3250 859 329 90 26 chr13 22848634 22848705 -79024464 + L2 LINE L2 2365 2430 -842 2381 174 26 9 chr13 22848705 22849160 -79024009 - MLT1C LTR MaLR -4 463 1 859 329 90 26 chr13 22849160 22849736 -79023433 + L2 LINE L2 2430 3051 -221 1281 239 151 36 chr13 22849741 22850185 -79022984 + MLT1D LTR MaLR 5 499 -6 227 310 76 44 chr13 22850236 22850394 -79022775 + L2 LINE L2 3083 3245 -27 658 290 35 66 chr13 22851097 22851414 -79021755 + MLT1K LTR MaLR 167 473 -115 253 238 170 61 chr13 22851589 22851736 -79021433 + MLT1J LTR MaLR 99 261 -250 214 243 14 40 chr13 22852949 22853023 -79020146 + (TG)n Simple_repeat Simple_repeat 2 73 0 300 233 0 0 chr13 22853044 22853117 -79020052 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 33 43 0 0 chr13 22853144 22853191 -79019978 + AT_rich Low_complexity Low_complexity 1 47 0 292 301 9 26 chr13 22853391 22853504 -79019665 - MIR SINE MIR -49 159 48 1233 160 62 4 chr13 22854753 22854997 -79018172 - L1MB1 LINE L1 -1 6167 5910 3383 188 20 4 chr13 22854999 22855685 -79017484 + L1 LINE L1 4448 5144 -1002 14771 199 27 37 chr13 22855938 22859087 -79014082 - L1MA5 LINE L1 -4 7358 4328 1471 200 46 3 chr13 22859087 22859372 -79013797 - AluJo SINE Alu -5 297 1 14771 199 27 37 chr13 22859372 22860897 -79012272 - L1MA5 LINE L1 -3034 4328 2789 2171 253 38 52 chr13 22860884 22862257 -79010912 - L1MA5 LINE L1 -4915 2294 1 * 24 0 0 0 chr13 22862939 22862963 -79010206 + AT_rich Low_complexity Low_complexity 1 24 0 1996 70 3 101 chr13 22863143 22863447 -79009722 + AluY SINE Alu 1 272 -39 180 0 0 0 chr13 22863447 22863467 -79009702 + (CA)n Simple_repeat Simple_repeat 1 20 0 1996 70 3 101 chr13 22863467 22863490 -79009679 + AluY SINE Alu 272 296 -15 490 261 73 0 chr13 22864474 22864639 -79008530 - HAL1 LINE L1 -353 2154 1978 2704 271 90 28 chr13 22864643 22865786 -79007383 - HAL1 LINE L1 -1245 1262 49 521 258 48 0 chr13 22865865 22865989 -79007180 + MER91B DNA MER1_type 1 130 -60 236 323 32 21 chr13 22866006 22866099 -79007070 + MER91B DNA MER1_type 90 183 -7 922 136 4 140 chr13 22867244 22867472 -79005697 + L1PA16 LINE L1 5961 6157 -9 6854 62 1 0 chr13 22867642 22868512 -79004657 + L1PA6 LINE L1 5282 6152 -2 606 275 130 5 chr13 22869071 22869271 -79003898 + MIR SINE MIR 14 238 -24 22 56 0 0 chr13 22869389 22869425 -79003744 + AT_rich Low_complexity Low_complexity 1 36 0 2311 109 0 0 chr13 22869433 22869737 -79003432 + AluSq SINE Alu 1 304 -9 230 250 40 81 chr13 22870167 22870291 -79002878 + HAL1b LINE L1 589 707 -641 404 315 149 41 chr13 22870470 22870860 -79002309 + MLT1L LTR MaLR 41 472 -143 385 321 86 45 chr13 22870874 22871117 -79002052 + L1M4 LINE L1 2787 3039 -3107 4536 35 0 0 chr13 22871462 22871999 -79001170 + L1PA4 LINE L1 5611 6147 -8 400 257 75 35 chr13 22872142 22872368 -79000801 + L1ME4a LINE L1 5664 5898 -223 405 0 0 0 chr13 22872685 22872730 -79000439 + (TG)n Simple_repeat Simple_repeat 2 46 0 2399 66 7 0 chr13 22873373 22873662 -78999507 - AluYa5 SINE Alu -7 304 14 2328 87 0 0 chr13 22874841 22875128 -78998041 + AluSc SINE Alu 1 287 -22 287 313 64 21 chr13 22875835 22875983 -78997186 - MIR SINE MIR -63 145 2 233 168 9 224 chr13 22876106 22876213 -78996956 - MIR SINE MIR -1 261 178 255 271 57 41 chr13 22876412 22876534 -78996635 - MIR SINE MIR -137 125 2 225 294 55 84 chr13 22877703 22877978 -78995191 - MLT1L LTR MaLR -182 433 167 1261 178 47 34 chr13 22878628 22878948 -78994221 + MER33 DNA MER1_type 1 324 0 211 194 0 0 chr13 22879120 22879156 -78994013 + (ATG)n Simple_repeat Simple_repeat 3 38 0 12370 231 20 21 chr13 22880786 22885013 -78988156 + L1PA15 LINE L1 1081 5309 -1488 5769 98 39 3 chr13 22885043 22886529 -78986640 + L1PA15 LINE L1 5280 6811 -5 237 232 0 18 chr13 22886919 22886975 -78986194 + G-rich Low_complexity Low_complexity 3 57 0 217 347 174 0 chr13 22890337 22890435 -78982734 + L2 LINE L2 3150 3264 -8 2107 129 10 0 chr13 22890696 22891005 -78982164 - AluSx SINE Alu 0 312 1 509 311 0 0 chr13 22892334 22892456 -78980713 - L2 LINE L2 -1 3271 3150 809 197 111 5 chr13 22892463 22892661 -78980508 - MER58A DNA MER1_type -5 219 1 445 343 106 35 chr13 22892853 22893279 -78979890 - L2 LINE L2 -337 2977 2522 295 21 64 0 chr13 22894249 22894296 -78978873 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6286 23 8 10 chr13 22894296 22895084 -78978085 - L1PA3 LINE L1 -16 6139 5354 22 56 0 0 chr13 22896344 22896380 -78976789 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr13 22896579 22896599 -78976570 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1123 256 34 21 chr13 22896850 22897268 -78975901 - Charlie7 DNA MER1_type -461 2151 1729 571 261 40 27 chr13 22897272 22897494 -78975675 - Charlie7 DNA MER1_type -2091 521 297 3329 94 13 0 chr13 22897755 22898214 -78974955 - L1PA11 LINE L1 0 6174 5710 294 233 0 68 chr13 22899506 22899609 -78973560 - MIR SINE MIR -56 206 111 1840 135 40 4 chr13 22899627 22899952 -78973217 - AluSx SINE Alu 0 335 1 1066 205 68 34 chr13 22900347 22900694 -78972475 - MSTD LTR MaLR 0 396 1 1421 217 98 61 chr13 22900696 22901221 -78971948 + MLT1F1 LTR MaLR 25 567 0 199 185 358 0 chr13 22901577 22901658 -78971511 + MIR SINE MIR 117 226 -36 260 231 0 0 chr13 22901676 22901728 -78971441 - MIR SINE MIR -60 148 97 359 185 0 0 chr13 22902868 22902933 -78970236 - U4 snRNA snRNA -80 65 1 325 343 42 30 chr13 22903131 22903367 -78969802 + L2 LINE L2 2518 2756 -558 532 278 64 71 chr13 22903616 22903911 -78969258 + L2 LINE L2 3021 3313 0 262 379 85 26 chr13 22904244 22904516 -78968653 + L2 LINE L2 2981 3268 -4 1144 70 6 0 chr13 22905456 22905612 -78967557 + L1PA13 LINE L1 5564 5720 -454 479 93 0 103 chr13 22905612 22905717 -78967452 + L1PA13 LINE L1 6064 6159 -4 808 320 128 43 chr13 22907259 22908021 -78965148 + L2 LINE L2 2329 3173 -99 1622 171 45 7 chr13 22908021 22908313 -78964856 + AluJb SINE Alu 1 303 -9 808 320 128 43 chr13 22908313 22908423 -78964746 + L2 LINE L2 3173 3272 0 219 204 0 0 chr13 22909207 22909256 -78963913 + CT-rich Low_complexity Low_complexity 4 52 0 200 233 0 0 chr13 22909258 22909301 -78963868 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 251 320 21 31 chr13 22909316 22909413 -78963756 - L2 LINE L2 -50 3263 3168 227 368 26 0 chr13 22909536 22909612 -78963557 - L2 LINE L2 -204 3068 2991 260 67 0 67 chr13 22909854 22909914 -78963255 + (CA)n Simple_repeat Simple_repeat 2 57 0 279 0 0 0 chr13 22910343 22910374 -78962795 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 322 308 83 30 chr13 22912663 22912832 -78960337 + MIR SINE MIR 56 233 -29 1546 220 37 135 chr13 22913217 22914238 -78958931 - L1MC5 LINE L1 -423 7818 6898 24 53 0 0 chr13 22914560 22914598 -78958571 + AT_rich Low_complexity Low_complexity 1 38 0 1334 247 146 2 chr13 22914766 22915244 -78957925 - L1MC5 LINE L1 -1879 6209 5663 437 309 80 41 chr13 22915507 22916095 -78957074 - L1MC5 LINE L1 -1094 5332 4722 452 287 87 52 chr13 22916096 22916615 -78956554 - L1MC5 LINE L1 -5032 1394 858 619 231 81 6 chr13 22916850 22917010 -78956159 - MLT1D LTR MaLR 0 505 334 609 190 32 38 chr13 22917044 22917202 -78955967 + MER53 DNA DNA 28 184 -5 * 1461 211 12 36 chr13 22917185 22917521 -78955648 - MLT1D LTR MaLR -177 328 1 885 172 61 22 chr13 22917534 22917714 -78955455 + MER53 DNA DNA 1 187 -2 3417 133 2 4 chr13 22919311 22919828 -78953341 + L1MA5A LINE L1 5508 6023 -274 1407 122 39 24 chr13 22919852 22919936 -78953233 + L1MC3 LINE L1 7527 7608 -177 2042 131 3 7 chr13 22919936 22920270 -78952899 + AluSx SINE Alu 1 333 0 1407 122 39 24 chr13 22920270 22920438 -78952731 + L1MC3 LINE L1 7608 7784 -1 2024 129 0 3 chr13 22920860 22921146 -78952023 - AluSx SINE Alu -15 297 13 455 258 18 60 chr13 22921202 22921369 -78951800 - L1MC5 LINE L1 -50 7911 7752 204 307 166 57 chr13 22921394 22921677 -78951492 - L2 LINE L2 -15 3298 2985 8158 15 0 0 chr13 22921898 22923141 -78950028 - L1HS LINE L1 0 6155 4913 3703 56 6 0 chr13 22925332 22925800 -78947369 - L1P LINE L1 -3813 2333 1863 2652 98 3 3 chr13 22925797 22926173 -78946996 - L1P LINE L1 -4759 1387 1012 * 7716 45 8 2 chr13 22926173 22927172 -78945997 + L1PA5 LINE L1 5146 6150 -4 2267 109 3 3 chr13 22927660 22927973 -78945196 + AluSq SINE Alu 1 313 0 1969 148 26 3 chr13 22928919 22929224 -78943945 + AluSx SINE Alu 1 312 0 523 248 86 40 chr13 22929419 22929554 -78943615 + MIR SINE MIR 53 201 -61 2433 100 0 0 chr13 22929554 22929864 -78943305 + AluSg SINE Alu 1 310 0 523 248 86 40 chr13 22929864 22929926 -78943243 + MIR SINE MIR 201 259 -3 251 135 0 96 chr13 22933197 22933249 -78939920 + L2 LINE L2 2709 2755 -559 297 325 60 13 chr13 22933339 22933490 -78939679 + MIR SINE MIR 48 205 -57 298 286 136 69 chr13 22933569 22933974 -78939195 - L2 LINE L2 -50 3263 2832 580 210 81 16 chr13 22934069 22934193 -78938976 - FLAM_C SINE Alu 0 133 2 2270 164 125 74 chr13 22934920 22934957 -78938212 - MLT2B2 LTR ERVL 0 515 481 432 0 0 0 chr13 22934957 22935005 -78938164 + (GA)n Simple_repeat Simple_repeat 1 48 0 2270 164 125 74 chr13 22935005 22935455 -78937714 - MLT2B2 LTR ERVL -34 481 3 3190 118 7 0 chr13 22935957 22936382 -78936787 - MSTA LTR MaLR 0 428 1 190 383 78 8 chr13 22936715 22936843 -78936326 - L2 LINE L2 -43 3229 3093 243 140 0 0 chr13 22938616 22938666 -78934503 + (CA)n Simple_repeat Simple_repeat 2 51 0 32 43 0 0 chr13 22939870 22939916 -78933253 + AT_rich Low_complexity Low_complexity 1 46 0 10687 25 4 1 chr13 22939919 22941879 -78931290 - L1PA3 LINE L1 0 6155 4195 322 227 0 0 chr13 22941973 22942039 -78931130 + MER113 DNA MER1_type? 456 521 0 1193 245 79 25 chr13 22942429 22942956 -78930213 + MLT2F LTR ERVL 1 601 -62 783 189 0 40 chr13 22942960 22943108 -78930061 + Tigger2 DNA MER2_type 2577 2718 0 15117 131 6 4 chr13 22943248 22945618 -78927551 - L1P LINE L1 -1038 5108 2735 1552 217 16 0 chr13 22945617 22945935 -78927234 + L1ME1 LINE L1 5840 6162 -4 * 31 112 0 0 chr13 22946545 22946688 -78926481 + AT_rich Low_complexity Low_complexity 1 143 0 383 246 17 17 chr13 22946704 22947052 -78926117 + (TA)n Simple_repeat Simple_repeat 1 348 0 229 65 0 0 chr13 22947054 22947100 -78926069 + LTR66 LTR ERVL 394 439 -171 2135 136 7 0 chr13 22948138 22948447 -78924722 - AluSx SINE Alu -1 311 1 444 317 17 17 chr13 22948559 22948739 -78924430 - MIR3 SINE MIR -11 197 18 235 366 41 41 chr13 22948845 22949017 -78924152 + MER5A DNA MER1_type 18 189 0 361 299 174 11 chr13 22949047 22949231 -78923938 + MIR SINE MIR 43 256 -6 21 0 0 0 chr13 22949348 22949369 -78923800 + AT_rich Low_complexity Low_complexity 1 21 0 1523 223 24 3 chr13 22949627 22949968 -78923201 - L1ME2 LINE L1 0 6164 5817 2515 38 0 0 chr13 22950060 22950352 -78922817 - AluY SINE Alu -19 292 1 1526 218 160 39 chr13 22950660 22951246 -78921923 + Charlie7 DNA MER1_type 65 721 -1891 582 288 209 17 chr13 22952912 22953382 -78919787 - L2 LINE L2 -5 3308 2750 1392 189 60 98 chr13 22953395 22953792 -78919377 - MLT1B LTR MaLR -8 382 1 1207 264 338 8 chr13 22953793 22954565 -78918604 - L2 LINE L2 -561 2753 1727 210 222 141 40 chr13 22954651 22954750 -78918419 + MIR SINE MIR 97 205 -57 387 296 28 0 chr13 22955012 22955120 -78918049 + MIR SINE MIR 73 183 -79 1850 222 18 22 chr13 22956268 22956844 -78916325 + LTR40a LTR ERVL 1 519 0 979 172 0 0 chr13 22956875 22957032 -78916137 + FAM SINE Alu 6 162 -23 2032 141 0 0 chr13 22957047 22957337 -78915832 + AluSx SINE Alu 1 290 -22 543 43 0 0 chr13 22957412 22957482 -78915687 + (TG)n Simple_repeat Simple_repeat 1 70 0 385 265 68 8 chr13 22957590 22957707 -78915462 + L2 LINE L2 3187 3310 -3 190 342 44 61 chr13 22957913 22958027 -78915142 + MIR3 SINE MIR 95 206 -2 2397 101 0 0 chr13 22958425 22958733 -78914436 + AluSx SINE Alu 1 308 -4 2311 127 12 0 chr13 22960986 22961308 -78911861 + L1PA16 LINE L1 5832 6157 -9 207 0 0 0 chr13 22962021 22962044 -78911125 + (TG)n Simple_repeat Simple_repeat 2 24 0 294 255 21 11 chr13 22962074 22962168 -78911001 + (TA)n Simple_repeat Simple_repeat 1 95 0 2171 128 3 0 chr13 22963269 22963574 -78909595 + AluSx SINE Alu 1 306 -6 686 227 29 29 chr13 22965550 22965755 -78907414 + MER8 DNA MER2_type 20 345 0 253 170 21 0 chr13 22966219 22966266 -78906903 - L2 LINE L2 -5 3267 3220 2150 69 0 0 chr13 22967216 22967476 -78905693 + AluSx SINE Alu 32 291 -21 1712 238 83 65 chr13 22967489 22967933 -78905236 + MER97c DNA MER1_type? 45 479 -611 1742 171 53 73 chr13 22967933 22968331 -78904838 - MLT1B LTR MaLR 0 390 1 1712 238 83 65 chr13 22968331 22968357 -78904812 + MER97c DNA MER1_type? 479 503 -587 2199 130 0 0 chr13 22968357 22968664 -78904505 + AluSx SINE Alu 1 307 -5 1712 238 83 65 chr13 22968664 22968873 -78904296 + MER97c DNA MER1_type? 503 707 -383 2115 121 30 0 chr13 22968873 22969170 -78903999 + AluSc SINE Alu 1 306 -3 1712 238 83 65 chr13 22969170 22969239 -78903930 + MER97c DNA MER1_type? 707 773 -317 526 163 0 0 chr13 22969239 22969319 -78903850 + MADE1 DNA Mariner 1 80 0 1712 238 83 65 chr13 22969319 22969388 -78903781 + MER97c DNA MER1_type? 773 880 -210 402 344 158 4 chr13 22969741 22970020 -78903149 - MER115 DNA AcHobo -287 406 85 2168 128 0 0 chr13 22970298 22970596 -78902573 - AluSx SINE Alu -14 298 1 243 0 0 0 chr13 22971792 22971819 -78901350 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5031 161 17 19 chr13 22971820 22973534 -78899635 - L1PA16 LINE L1 -177 5989 4273 182 298 140 89 chr13 22973988 22974280 -78898889 - L2 LINE L2 -1022 2292 1986 27 0 0 0 chr13 22974298 22974325 -78898844 + AT_rich Low_complexity Low_complexity 1 27 0 892 206 0 0 chr13 22974325 22974485 -78898684 + AluJo SINE Alu 1 160 -152 1869 53 109 0 chr13 22976402 22976649 -78896520 + LTR12 LTR ERV1 1 274 -440 297 303 10 0 chr13 22976653 22976752 -78896417 + LTR30 LTR ERV1 544 643 -79 1038 159 176 2 chr13 22976752 22976978 -78896191 + LTR12 LTR ERV1 73 614 -100 462 287 69 21 chr13 22977512 22977700 -78895469 + L1ME4a LINE L1 5669 5865 -256 206 234 4 34 chr13 22978746 22978812 -78894357 - MIR SINE MIR -69 139 74 404 331 18 12 chr13 22979859 22980022 -78893147 + MIR SINE MIR 73 236 -26 439 221 213 0 chr13 22980034 22980156 -78893013 - MIR SINE MIR 0 262 115 690 222 34 108 chr13 22980694 22980965 -78892204 + L1MA9 LINE L1 6039 6289 -2 * 1489 269 191 20 chr13 22980963 22982018 -78891151 - L1M4 LINE L1 -2672 3474 2239 300 288 128 0 chr13 22982280 22982405 -78890764 - L1MC4 LINE L1 -1 8041 7901 193 286 119 12 chr13 22982648 22982732 -78890437 + MER5A DNA MER1_type 54 146 -43 645 306 31 9 chr13 22982765 22982987 -78890182 - MIR SINE MIR -12 250 24 3830 172 87 56 chr13 22982999 22983824 -78889345 - MER21B LTR ERV1 -12 851 1 250 202 167 35 chr13 22984324 22984438 -78888731 + L2 LINE L2 2678 2806 -508 2004 113 0 55 chr13 22984814 22985123 -78888046 - AluSq SINE Alu -21 292 1 21 71 0 0 chr13 22985267 22985309 -78887860 + AT_rich Low_complexity Low_complexity 1 42 0 191 243 0 0 chr13 22985499 22985536 -78887633 - MER5A DNA MER1_type -102 87 51 215 227 0 0 chr13 22985576 22985620 -78887549 + MER5A DNA MER1_type 146 189 0 320 317 116 31 chr13 22986319 22986543 -78886626 - MIR SINE MIR 0 262 20 * 482 271 0 16 chr13 22986532 22986654 -78886515 + L2 LINE L2 3175 3294 -19 441 243 40 35 chr13 22986766 22986992 -78886177 + L1MEc LINE L1 2078 2304 -4092 365 271 57 57 chr13 22987053 22987193 -78885976 - MIR3 SINE MIR -67 141 2 186 339 54 54 chr13 22987264 22987745 -78885424 - L2 LINE L2 -1977 1337 857 458 276 56 56 chr13 22989355 22989551 -78883618 + MLT1J LTR MaLR 3 198 -313 780 259 137 8 chr13 22990838 22991101 -78882068 + MLT1J2 LTR MaLR 117 413 -37 568 293 6 6 chr13 22992138 22992302 -78880867 + MIR SINE MIR 33 196 -66 214 245 57 0 chr13 22993084 22993137 -78880032 + L2 LINE L2 3177 3232 -40 212 152 0 0 chr13 22993211 22993244 -78879925 + L2 LINE L2 3240 3272 0 2365 96 3 0 chr13 22993560 22993862 -78879307 + AluSp SINE Alu 1 303 -10 613 270 52 56 chr13 22994320 22994553 -78878616 - MER102b DNA MER1_type -7 334 103 748 249 138 9 chr13 22997805 22998030 -78875139 - MIR SINE MIR -1 261 8 677 289 80 17 chr13 22998176 22998415 -78874754 + MIR SINE MIR 9 262 0 1050 193 78 21 chr13 23001027 23001067 -78872102 - MLT2B3 LTR ERVL 0 554 518 767 49 37 25 chr13 23001067 23001230 -78871939 + (TA)n Simple_repeat Simple_repeat 2 166 0 198 0 0 0 chr13 23001239 23001261 -78871908 + (GA)n Simple_repeat Simple_repeat 2 23 0 1050 193 78 21 chr13 23001261 23001522 -78871647 - MLT2B3 LTR ERVL -43 511 229 1927 130 19 16 chr13 23001523 23001649 -78871520 + AluSq SINE Alu 1 125 -188 189 0 0 0 chr13 23001649 23001670 -78871499 + (CA)n Simple_repeat Simple_repeat 2 22 0 1927 130 19 16 chr13 23001670 23001851 -78871318 + AluSq SINE Alu 125 309 -4 513 128 29 0 chr13 23001851 23001953 -78871216 + GA-rich Low_complexity Low_complexity 1 105 0 1653 116 39 4 chr13 23001954 23002213 -78870956 - MLT2A2 LTR ERVL -185 268 1 269 247 24 35 chr13 23002263 23002348 -78870821 - L2 LINE L2 -1 3271 3188 1429 183 66 101 chr13 23002555 23002725 -78870444 + MLT1A1 LTR MaLR 1 175 -190 278 26 26 0 chr13 23002725 23002764 -78870405 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1429 183 66 101 chr13 23002764 23002970 -78870199 + MLT1A1 LTR MaLR 175 364 -1 189 74 0 0 chr13 23003338 23003365 -78869804 + (TA)n Simple_repeat Simple_repeat 2 28 0 335 285 162 54 chr13 23003624 23004013 -78869156 + L2 LINE L2 2842 3272 0 613 265 40 20 chr13 23004090 23004290 -78868879 - MIR SINE MIR -17 245 42 1844 87 0 4 chr13 23004387 23004628 -78868541 - AluSc SINE Alu -1 308 69 431 367 65 4 chr13 23005896 23006125 -78867044 + MIR SINE MIR 20 262 0 211 293 173 0 chr13 23006391 23006466 -78866703 + MIR SINE MIR 30 117 -91 279 337 0 12 chr13 23006483 23006569 -78866600 + MIR SINE MIR 11 95 -167 727 259 22 0 chr13 23006584 23006769 -78866400 - MIR SINE MIR -6 256 68 207 333 126 0 chr13 23006886 23006973 -78866196 - L2 LINE L2 -20 3252 3155 224 267 17 0 chr13 23007399 23007459 -78865710 - L2 LINE L2 -2 3311 3251 333 222 8 64 chr13 23007738 23007849 -78865320 + MIR SINE MIR 46 154 -66 231 88 0 0 chr13 23008693 23008727 -78864442 + (TCC)n Simple_repeat Simple_repeat 1 34 0 1660 91 5 0 chr13 23008813 23009023 -78864146 - AluSq SINE Alu -19 294 84 1299 85 17 0 chr13 23009456 23009632 -78863537 + AluSg/x SINE Alu 129 307 -5 225 349 163 5 chr13 23009917 23010126 -78863043 - L3b LINE CR1 -218 1365 1124 210 319 0 0 chr13 23010502 23010549 -78862620 + MIR SINE MIR 29 75 -133 526 298 162 5 chr13 23011451 23011649 -78861520 - L3 LINE CR1 -1 1576 1348 998 139 0 6 chr13 23012484 23012515 -78860654 + (GGAA)n Simple_repeat Simple_repeat 1 209 0 998 139 0 6 chr13 23012515 23012695 -78860474 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 259 282 88 94 chr13 23012736 23012917 -78860252 - L3 LINE CR1 -279 1298 1119 204 200 17 50 chr13 23013424 23013484 -78859685 + GA-rich Low_complexity Low_complexity 6 63 0 222 353 78 33 chr13 23013979 23014132 -78859037 - L3 LINE CR1 -1166 411 252 260 292 46 138 chr13 23014581 23014821 -78858348 - MIR SINE MIR -10 252 35 2031 243 36 4 chr13 23016211 23016710 -78856459 + L1ME1 LINE L1 5647 6161 -5 2393 76 0 3 chr13 23016794 23017095 -78856074 + AluY SINE Alu 1 300 -11 186 43 0 0 chr13 23017672 23017695 -78855474 + (TGG)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 23017805 23017828 -78855341 + AT_rich Low_complexity Low_complexity 1 23 0 217 318 62 23 chr13 23019812 23019941 -78853228 - L2 LINE L2 0 3313 3180 439 202 56 22 chr13 23021139 23021228 -78851941 - MER81 DNA DNA -21 93 2 813 226 24 0 chr13 23021549 23021713 -78851456 + MER5A DNA MER1_type 21 188 -1 2772 26 3 0 chr13 23021824 23022134 -78851035 - AluY SINE Alu 0 311 1 215 321 48 0 chr13 23023768 23023852 -78849317 - L2 LINE L2 0 3272 3185 938 196 88 0 chr13 23023881 23024075 -78849094 - MIR SINE MIR -49 213 3 2327 111 0 0 chr13 23025451 23025758 -78847411 - AluSx SINE Alu -5 307 1 1395 189 33 49 chr13 23025965 23026271 -78846898 - AluJo SINE Alu -6 306 6 541 331 116 52 chr13 23027003 23027667 -78845502 + L2 LINE L2 1610 2371 -943 1953 131 0 4 chr13 23027667 23027965 -78845204 - AluSx SINE Alu 0 307 11 541 331 116 52 chr13 23027965 23028367 -78844802 + L2 LINE L2 2371 2746 -568 216 97 0 0 chr13 23028473 23028504 -78844665 + (CAT)n Simple_repeat Simple_repeat 3 33 0 501 273 52 6 chr13 23028509 23028681 -78844488 - MIR SINE MIR -10 252 73 648 320 40 0 chr13 23030133 23030361 -78842808 - MIR SINE MIR 0 262 26 2213 108 3 7 chr13 23030438 23030766 -78842403 - AluSq SINE Alu 0 313 1 686 270 25 0 chr13 23030769 23030965 -78842204 - MIR SINE MIR -49 213 13 510 326 38 13 chr13 23031909 23032145 -78841024 + MIR SINE MIR 21 262 0 296 327 0 0 chr13 23033540 23033641 -78839528 - MIR SINE MIR -130 132 32 262 320 0 19 chr13 23034501 23034604 -78838565 - MIR SINE MIR -130 132 32 1219 242 81 73 chr13 23034852 23035344 -78837825 + MER21B LTR ERV1 100 595 -268 710 61 0 10 chr13 23036038 23036136 -78837033 + L1PB1 LINE L1 6054 6150 -1 27 49 0 0 chr13 23036136 23036177 -78836992 + AT_rich Low_complexity Low_complexity 1 41 0 2005 133 3 11 chr13 23036178 23036495 -78836674 - AluSx SINE Alu 0 315 1 190 241 0 19 chr13 23038945 23038999 -78834170 - MER5B DNA MER1_type -124 54 2 252 0 0 0 chr13 23039019 23039047 -78834122 + (CA)n Simple_repeat Simple_repeat 2 29 0 246 309 100 0 chr13 23039157 23039267 -78833902 + MIR3 SINE MIR 64 184 -24 537 295 62 48 chr13 23040928 23041264 -78831905 - MER102b DNA MER1_type 0 341 1 1034 99 35 0 chr13 23043038 23043179 -78829990 - AluSp/q SINE Alu -7 306 161 841 156 96 0 chr13 23043653 23043820 -78829349 - MER5A DNA MER1_type -1 188 6 21 36 0 0 chr13 23044166 23044194 -78828975 + AT_rich Low_complexity Low_complexity 1 28 0 465 244 51 21 chr13 23044528 23044718 -78828451 + MIR SINE MIR 25 218 -44 256 269 11 75 chr13 23047541 23047634 -78825535 + MER5A DNA MER1_type 87 173 -16 327 293 41 0 chr13 23048588 23048711 -78824458 - L2 LINE L2 -6 3307 3180 243 283 0 0 chr13 23049029 23049082 -78824087 - L2 LINE L2 -680 2634 2582 312 309 146 28 chr13 23050336 23050514 -78822655 + MIR3 SINE MIR 3 201 -7 354 311 82 20 chr13 23052016 23052212 -78820957 + L2 LINE L2 3075 3282 -31 1569 192 0 21 chr13 23053591 23053877 -78819292 + AluJb SINE Alu 3 282 -30 24 0 0 0 chr13 23053886 23053910 -78819259 + AT_rich Low_complexity Low_complexity 1 24 0 1766 217 125 53 chr13 23055477 23055989 -78817180 - MLT1H LTR MaLR 0 549 1 362 202 48 0 chr13 23058010 23058094 -78815075 - Charlie8 DNA MER1_type -2259 158 71 269 276 41 41 chr13 23058588 23058711 -78814458 - MIR3 SINE MIR -54 154 32 456 311 144 0 chr13 23058965 23059145 -78814024 - MIR SINE MIR -29 233 28 333 228 138 83 chr13 23060980 23061125 -78812044 + MER5A DNA MER1_type 37 189 0 2012 154 0 10 chr13 23061576 23061881 -78811288 - AluJb SINE Alu 0 312 11 549 255 50 6 chr13 23062059 23062220 -78810949 + MER5B DNA MER1_type 9 176 -2 870 183 5 42 chr13 23062974 23063165 -78810004 + MER5A DNA MER1_type 5 188 -1 190 259 69 17 chr13 23063783 23063841 -78809328 - MIR SINE MIR -127 81 21 4331 108 21 3 chr13 23064813 23065436 -78807733 - MER51A LTR ERV1 0 634 1 453 270 36 0 chr13 23065861 23065998 -78807171 - MIR SINE MIR 0 262 121 26 0 0 0 chr13 23067063 23067089 -78806080 + AT_rich Low_complexity Low_complexity 1 26 0 1701 162 30 18 chr13 23067219 23067553 -78805616 - L1MB8 LINE L1 -1 6177 5840 28 0 0 0 chr13 23067636 23067664 -78805505 + AT_rich Low_complexity Low_complexity 1 28 0 193 284 241 12 chr13 23067666 23067828 -78805341 - MIR SINE MIR -32 230 32 608 226 77 52 chr13 23068042 23068290 -78804879 + MIR SINE MIR 9 262 0 2457 90 0 3 chr13 23068653 23068964 -78804205 + AluSg SINE Alu 1 310 0 271 331 52 15 chr13 23069330 23069466 -78803703 + L1ME LINE L1 5684 5824 -297 2258 237 78 95 chr13 23070874 23071464 -78801705 - MLT1G LTR MaLR -15 575 1 2198 108 3 10 chr13 23072124 23072421 -78800748 + AluSx SINE Alu 1 295 -17 697 275 90 9 chr13 23072705 23072938 -78800231 - MIR SINE MIR -5 257 6 711 163 188 6 chr13 23073393 23073553 -78799616 - MER53 DNA DNA 0 189 1 313 176 15 0 chr13 23073822 23073890 -78799279 - L1MC4 LINE L1 0 8042 7974 699 257 40 14 chr13 23074093 23074315 -78798854 - L1MC4 LINE L1 -203 7839 7612 571 309 100 0 chr13 23074334 23074554 -78798615 - MIR SINE MIR -20 242 1 205 339 104 42 chr13 23074735 23074927 -78798242 + MIR SINE MIR 47 250 -12 1772 197 67 6 chr13 23075338 23075694 -78797475 + MLT1B LTR MaLR 1 378 -12 1543 99 49 0 chr13 23075747 23075925 -78797244 + MLT2A2 LTR ERVL 220 413 -40 333 0 0 0 chr13 23075925 23075962 -78797207 + (TG)n Simple_repeat Simple_repeat 2 38 0 1543 99 49 0 chr13 23075962 23076006 -78797163 + MLT2A2 LTR ERVL 413 453 0 2135 128 0 0 chr13 23077624 23077914 -78795255 - AluSx SINE Alu -15 297 8 492 157 22 11 chr13 23079872 23079961 -78793208 - MER46A DNA MER2_type -97 139 50 320 323 60 42 chr13 23080694 23080911 -78792258 - MIR SINE MIR -24 238 18 287 296 40 59 chr13 23080959 23081111 -78792058 + MIR SINE MIR 39 187 -75 856 201 0 19 chr13 23081166 23081325 -78791844 - FRAM SINE Alu -7 159 4 528 251 113 88 chr13 23081455 23081898 -78791271 - MLT1L LTR MaLR 0 615 162 293 194 30 15 chr13 23081936 23082003 -78791166 - MLT1L LTR MaLR -543 72 5 261 282 73 16 chr13 23083570 23083694 -78789475 - MIR SINE MIR -46 216 86 1247 144 8 58 chr13 23084816 23085059 -78788110 - L1PA13 LINE L1 -7 6156 5926 258 252 189 0 chr13 23088296 23088407 -78784762 + L2 LINE L2 3182 3313 0 288 0 0 0 chr13 23089102 23089134 -78784035 + (TC)n Simple_repeat Simple_repeat 1 32 0 257 233 128 0 chr13 23089336 23089422 -78783747 + MER5A DNA MER1_type 10 106 -83 2242 116 0 10 chr13 23089516 23089827 -78783342 + AluSg SINE Alu 1 308 -2 359 275 38 33 chr13 23090195 23090405 -78782764 + MIR SINE MIR 17 232 -30 821 141 59 82 chr13 23090757 23090977 -78782192 + MER20 DNA MER1_type 1 215 -4 359 297 97 11 chr13 23091459 23091634 -78781535 + MLT1L LTR MaLR 368 557 -58 2027 97 0 4 chr13 23091820 23092077 -78781092 - AluSq SINE Alu -26 287 32 403 257 26 9 chr13 23093311 23093424 -78779745 + MIR SINE MIR 81 195 -67 516 271 103 23 chr13 23093442 23093656 -78779513 + MIR SINE MIR 2 232 -30 204 217 0 0 chr13 23093687 23093733 -78779436 + MIR SINE MIR 215 260 -2 1519 237 22 16 chr13 23093889 23094252 -78778917 - MLT1A2 LTR MaLR -5 369 5 22 0 0 0 chr13 23095448 23095470 -78777699 + AT_rich Low_complexity Low_complexity 1 22 0 330 328 8 22 chr13 23096557 23096691 -78776478 - MER5A DNA MER1_type 0 189 58 222 285 60 53 chr13 23096577 23096728 -78776441 + MER5A DNA MER1_type 31 182 -7 * 222 339 100 83 chr13 23096958 23097297 -78775872 - L2 LINE L2 -50 3222 2878 2014 163 12 15 chr13 23097328 23097671 -78775498 - MLT1A1 LTR MaLR 0 365 24 377 240 11 33 chr13 23098797 23098980 -78774189 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 237 236 0 0 chr13 23099012 23099067 -78774102 - MIR SINE MIR -112 150 96 934 244 40 4 chr13 23099499 23099749 -78773420 - MIR SINE MIR 0 262 4 180 0 0 0 chr13 23102288 23102308 -78770861 + (TTG)n Simple_repeat Simple_repeat 2 21 0 234 270 52 43 chr13 23102733 23102848 -78770321 - MIR3 SINE MIR -29 179 64 183 80 0 0 chr13 23102907 23102932 -78770237 + (CCCCCA)n Simple_repeat Simple_repeat 3 27 0 420 335 36 0 chr13 23106949 23107116 -78766053 + L3b LINE CR1 1264 1436 -147 222 167 24 0 chr13 23108259 23108301 -78764868 + (TA)n Simple_repeat Simple_repeat 1 43 0 1142 182 36 9 chr13 23110474 23110699 -78762470 + L1MC1 LINE L1 6101 6331 -2 1675 231 164 25 chr13 23110989 23111539 -78761630 - MLT1E2 LTR MaLR 0 626 1 192 255 189 20 chr13 23111539 23111692 -78761477 + L2 LINE L2 1828 2006 -1308 2172 117 3 0 chr13 23112009 23112307 -78760862 + AluSp SINE Alu 2 300 -13 1846 163 3 16 chr13 23112569 23112875 -78760294 + AluJo SINE Alu 1 302 -10 520 139 0 0 chr13 23113015 23113101 -78760068 + MER5A DNA MER1_type 20 105 -84 228 356 130 18 chr13 23113324 23113608 -78759561 + L2 LINE L2 2910 3225 -47 320 250 36 0 chr13 23114263 23114347 -78758822 + MIR SINE MIR 120 206 -56 2286 119 0 0 chr13 23114726 23115038 -78758131 - AluSx SINE Alu 0 312 1 2179 179 39 10 chr13 23116173 23116587 -78756582 + MSTB LTR MaLR 1 426 0 285 289 26 50 chr13 23116800 23116924 -78756245 - MIR SINE MIR -67 141 46 293 274 18 44 chr13 23117030 23117167 -78756002 - LTR33A LTR ERVL -2 521 411 241 311 48 0 chr13 23117425 23117528 -78755641 - LTR67 LTR ERVL -336 221 114 309 26 0 0 chr13 23118214 23118252 -78754917 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr13 23118261 23118299 -78754870 + AT_rich Low_complexity Low_complexity 1 38 0 531 353 92 11 chr13 23118325 23118673 -78754496 + L3 LINE CR1 1068 1443 -134 201 39 0 0 chr13 23119570 23119596 -78753573 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 258 135 0 chr13 23120988 23121077 -78752092 + MIR SINE MIR 162 262 0 338 288 42 42 chr13 23121175 23121293 -78751876 + L2 LINE L2 3137 3254 -18 223 265 29 20 chr13 23121485 23121587 -78751582 + MER5A DNA MER1_type 85 187 -2 2513 77 0 0 chr13 23123012 23123323 -78749846 + AluY SINE Alu 1 311 0 273 186 246 36 chr13 23123540 23123707 -78749462 + L2 LINE L2 3107 3308 -5 1028 152 25 0 chr13 23124645 23124803 -78748366 - AluSg/x SINE Alu -15 297 136 2424 149 39 12 chr13 23124841 23125250 -78747919 - MSTB LTR MaLR 0 426 7 207 0 0 0 chr13 23125331 23125354 -78747815 + (CAA)n Simple_repeat Simple_repeat 2 24 0 218 236 56 0 chr13 23125634 23125706 -78747463 - L2 LINE L2 -215 3057 2982 201 286 51 41 chr13 23125721 23125819 -78747350 - L2 LINE L2 -49 3264 3166 194 333 106 8 chr13 23126558 23126681 -78746488 + L2 LINE L2 2681 2815 -499 512 249 30 6 chr13 23126726 23126891 -78746278 - L1M4 LINE L1 -775 5371 5203 329 306 171 14 chr13 23127437 23127653 -78745516 + MIR SINE MIR 13 262 0 522 173 0 0 chr13 23127868 23127972 -78745197 + (TCCA)n Simple_repeat Simple_repeat 2 105 0 317 250 54 45 chr13 23127972 23128084 -78745085 - L2 LINE L2 0 3272 3160 260 367 120 6 chr13 23128178 23128336 -78744833 + MIR3 SINE MIR 20 195 -13 267 291 53 76 chr13 23129037 23129339 -78743830 + L2 LINE L2 2943 3237 -35 523 296 23 6 chr13 23129367 23129539 -78743630 - MIR SINE MIR 0 262 88 368 206 0 0 chr13 23129717 23129785 -78743384 - AluJo SINE Alu -7 295 228 553 179 9 28 chr13 23129785 23129891 -78743278 - AluJo SINE Alu -160 152 49 180 135 0 0 chr13 23130877 23130914 -78742255 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 2172 181 21 65 chr13 23130987 23131513 -78741656 - MLT1D LTR MaLR -2 503 1 1414 245 52 46 chr13 23132071 23132573 -78740596 + MLT1D LTR MaLR 1 505 0 354 212 0 0 chr13 23132961 23133060 -78740109 + (CA)n Simple_repeat Simple_repeat 1 99 0 189 270 0 0 chr13 23133469 23133506 -78739663 - L2 LINE L2 -34 3279 3243 520 216 60 0 chr13 23133871 23133987 -78739182 - L1PB4 LINE L1 0 6156 6034 1279 301 93 21 chr13 23133992 23134809 -78738360 - L2 LINE L2 -1064 2250 1375 411 288 76 83 chr13 23135082 23135502 -78737667 + L1MEd LINE L1 176 592 -5613 337 289 79 5 chr13 23135555 23135609 -78737560 + L1MEd LINE L1 723 772 -5433 204 40 0 0 chr13 23135609 23135634 -78737535 + (CAGAGA)n Simple_repeat Simple_repeat 6 30 0 337 289 79 5 chr13 23135634 23135769 -78737400 + L1MEd LINE L1 772 926 -5279 731 87 0 39 chr13 23135787 23135891 -78737278 + HY3 scRNA scRNA 1 100 -1 504 145 111 26 chr13 23135933 23136050 -78737119 + L1MB1 LINE L1 6042 6168 0 * 570 259 62 69 chr13 23136047 23136223 -78736946 + L1MEd LINE L1 935 1111 -5094 2178 113 3 0 chr13 23136223 23136528 -78736641 + AluSx SINE Alu 1 306 0 570 259 62 69 chr13 23136528 23136755 -78736414 + L1MEd LINE L1 1111 1336 -4869 443 285 79 18 chr13 23136892 23137120 -78736049 + L1MEd LINE L1 1573 1814 -4582 186 340 92 76 chr13 23138169 23138551 -78734618 - L2 LINE L2 -48 3224 2837 22 0 0 0 chr13 23138674 23138696 -78734473 + AT_rich Low_complexity Low_complexity 1 22 0 300 350 79 46 chr13 23138727 23139118 -78734051 - L2 LINE L2 -649 2665 2262 262 257 68 23 chr13 23140603 23140702 -78732467 + MIR SINE MIR 56 162 -46 690 204 45 17 chr13 23140711 23140887 -78732282 + Charlie8 DNA MER1_type 57 237 -2180 1059 180 24 33 chr13 23140976 23141187 -78731982 - MER3 DNA MER1_type 0 209 1 362 301 22 22 chr13 23142084 23142220 -78730949 + MER5B DNA MER1_type 43 178 0 2310 76 38 3 chr13 23143555 23143846 -78729323 - AluY SINE Alu -10 301 1 323 301 90 8 chr13 23144038 23144171 -78728998 + MER5B DNA MER1_type 4 147 -31 395 183 11 32 chr13 23144306 23144399 -78728770 - MER5A DNA MER1_type -90 99 9 429 274 97 6 chr13 23144485 23144660 -78728509 + MIR SINE MIR 2 192 -70 378 0 0 0 chr13 23144870 23144912 -78728257 + (TG)n Simple_repeat Simple_repeat 2 43 0 866 47 0 0 chr13 23146019 23146126 -78727043 - L1PA8 LINE L1 0 6172 6066 346 323 51 13 chr13 23146424 23146582 -78726587 + MER5B DNA MER1_type 9 172 -6 * 438 340 6 19 chr13 23146570 23146729 -78726440 - MIR3 SINE MIR -32 176 20 239 236 42 0 chr13 23147134 23147206 -78725963 + MIR SINE MIR 173 247 -15 584 235 157 0 chr13 23147863 23148016 -78725153 + MER5A DNA MER1_type 13 189 0 266 294 29 0 chr13 23148333 23148435 -78724734 - L1MC4 LINE L1 -1324 6718 6614 2310 182 30 32 chr13 23148456 23148929 -78724240 - MLT2B1 LTR ERVL -48 472 1 421 265 164 60 chr13 23148952 23149577 -78723592 + L2 LINE L2 2574 3251 -62 330 338 105 18 chr13 23151300 23151634 -78721535 + L2 LINE L2 2920 3282 -31 249 33 0 0 chr13 23151641 23151671 -78721498 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 237 255 32 11 chr13 23152367 23152461 -78720708 + L2 LINE L2 2934 3029 -243 224 283 44 62 chr13 23153427 23153540 -78719629 + MIR SINE MIR 46 156 -106 270 170 19 0 chr13 23154745 23154798 -78718371 + MER116 DNA Mariner 22 75 -5 254 239 43 33 chr13 23155471 23155563 -78717606 - L3 LINE CR1 -62 1515 1423 489 297 29 42 chr13 23155620 23155859 -78717310 + MIR SINE MIR 15 250 -12 268 247 118 12 chr13 23155893 23155978 -78717191 - L3 LINE CR1 -255 1322 1229 2665 30 0 0 chr13 23156416 23156713 -78716456 + AluY SINE Alu 1 297 -14 745 256 256 10 chr13 23157563 23157795 -78715374 + L2 LINE L2 2805 2979 -334 180 0 0 0 chr13 23157795 23157815 -78715354 + (TC)n Simple_repeat Simple_repeat 1 20 0 745 256 256 10 chr13 23157815 23157989 -78715180 + L2 LINE L2 2979 3311 -2 275 244 39 0 chr13 23158672 23158750 -78714419 + GA-rich Low_complexity Low_complexity 1 81 0 566 322 10 5 chr13 23158858 23159066 -78714103 + MIR SINE MIR 30 238 -24 221 180 20 0 chr13 23159069 23159119 -78714050 + (CAT)n Simple_repeat Simple_repeat 1 51 0 197 293 67 0 chr13 23159129 23159204 -78713965 - MIR SINE MIR -42 220 141 198 260 20 0 chr13 23159454 23159504 -78713665 + MIR SINE MIR 21 71 -137 498 276 10 36 chr13 23160204 23160400 -78712769 + MIR SINE MIR 44 234 -28 632 297 4 48 chr13 23162359 23162608 -78710561 + MIR SINE MIR 15 252 -10 1660 59 0 18 chr13 23162613 23162832 -78710337 + L1PA8 LINE L1 5957 6171 -1 2351 105 0 7 chr13 23165389 23165694 -78707475 - AluSx SINE Alu -9 303 1 404 226 135 30 chr13 23166242 23166375 -78706794 - MLT1K LTR MaLR -254 334 188 1817 245 89 35 chr13 23166393 23166932 -78706237 - MLT1E2 LTR MaLR -8 618 51 262 339 87 0 chr13 23167592 23167719 -78705450 + MIR3 SINE MIR 20 157 -51 1188 289 51 12 chr13 23168292 23168701 -78704468 - LTR16A LTR ERVL 0 450 26 1986 161 70 21 chr13 23169047 23169419 -78703750 - MLT1B LTR MaLR 0 390 1 189 0 0 0 chr13 23169531 23169552 -78703617 + (T)n Simple_repeat Simple_repeat 1 21 0 501 110 0 128 chr13 23169592 23169701 -78703468 - L1PA10 LINE L1 0 6168 6074 250 209 108 39 chr13 23169722 23169851 -78703318 - L1ME4a LINE L1 -40 6081 5944 218 57 57 0 chr13 23170312 23170347 -78702822 + (ATTG)n Simple_repeat Simple_repeat 4 40 0 350 210 0 10 chr13 23171096 23171196 -78701973 + GA-rich Low_complexity Low_complexity 4 102 0 227 229 0 16 chr13 23171179 23171199 -78701970 - LTR66 LTR ERVL -152 458 439 * 201 147 0 0 chr13 23171199 23171233 -78701936 + (TA)n Simple_repeat Simple_repeat 2 35 0 586 199 87 0 chr13 23172046 23172207 -78700962 + MER96B DNA MER1_type? 1 175 -242 561 138 0 0 chr13 23172348 23172442 -78700727 + L1MA8 LINE L1 6186 6279 -12 676 182 49 28 chr13 23223015 23223158 -78650011 + MER69 DNA AcHobo 2380 2525 -1 371 184 208 48 chr13 23223964 23224089 -78649080 - L2 LINE L2 0 3313 3169 461 259 93 51 chr13 23225462 23225678 -78647491 - L2 LINE L2 -123 3190 2966 315 277 0 0 chr13 23225987 23226052 -78647117 + MER69 DNA AcHobo 1 65 -2461 2617 267 106 12 chr13 23226062 23226947 -78646222 - L2 LINE L2 -363 2951 1984 298 268 52 0 chr13 23226948 23227045 -78646124 - L2 LINE L2 -2383 931 830 227 179 221 63 chr13 23227046 23227141 -78646028 - Charlie2 DNA MER1_type -2718 144 35 439 254 164 5 chr13 23227238 23227427 -78645742 + L2 LINE L2 1319 1537 -1777 460 244 64 19 chr13 23227431 23227587 -78645582 + L1MC4 LINE L1 7879 8041 -1 1172 210 178 25 chr13 23227623 23227923 -78645246 + Charlie2 DNA MER1_type 2249 2502 -360 2243 60 63 0 chr13 23227923 23228207 -78644962 - AluY SINE Alu -9 302 1 1172 210 178 25 chr13 23228207 23228435 -78644734 + Charlie2 DNA MER1_type 2502 2858 -4 1213 297 79 2 chr13 23228470 23228888 -78644281 - L2 LINE L2 -2031 1283 834 1495 220 133 21 chr13 23228888 23229470 -78643699 + MLT1E3 LTR MaLR 1 597 -27 1911 273 88 26 chr13 23229486 23230216 -78642953 - L2 LINE L2 -2492 822 48 1971 185 83 37 chr13 23230496 23230929 -78642240 - MSTB2 LTR MaLR 0 457 5 24 0 0 0 chr13 23231707 23231731 -78641438 + AT_rich Low_complexity Low_complexity 1 24 0 376 349 94 10 chr13 23232231 23232423 -78640746 - MIR SINE MIR -21 241 34 1251 168 15 58 chr13 23232892 23233166 -78640003 + AluJo SINE Alu 48 309 -3 650 254 128 89 chr13 23234187 23234750 -78638419 + MER45C DNA AcHobo 4 633 -320 354 127 0 0 chr13 23234745 23234800 -78638369 + MER45C DNA AcHobo 899 953 0 * 222 320 26 0 chr13 23234830 23234908 -78638261 - L3 LINE CR1 -763 814 735 440 299 69 10 chr13 23235255 23235459 -78637710 - MER67D LTR ERV1 -3 511 296 * 1806 201 37 16 chr13 23235457 23235840 -78637329 - MER67B LTR ERV1 -270 391 1 451 335 65 39 chr13 23236782 23237092 -78636077 + L3 LINE CR1 687 1004 -573 1483 208 68 42 chr13 23237953 23238377 -78634792 - L1ME1 LINE L1 -4 6162 5728 1853 185 46 48 chr13 23238397 23238857 -78634312 + MLT1C LTR MaLR 1 459 -8 1494 202 105 8 chr13 23238863 23239743 -78633426 - L1ME1 LINE L1 -470 5696 4680 180 301 89 96 chr13 23240381 23240527 -78632642 - L2 LINE L2 -5 3267 3123 786 229 62 110 chr13 23241621 23242040 -78631129 - MLT1J LTR MaLR -3 508 110 230 236 36 0 chr13 23241999 23242054 -78631115 - LTR67 LTR ERVL -401 156 100 * 582 15 0 0 chr13 23242976 23243043 -78630126 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 295 152 15 15 chr13 23243043 23243109 -78630060 + GA-rich Low_complexity Low_complexity 2 67 0 518 269 73 18 chr13 23243850 23243897 -78629272 + MIR SINE MIR 10 53 -209 2026 130 10 17 chr13 23243897 23244197 -78628972 + AluSx SINE Alu 1 298 -14 518 269 73 18 chr13 23244197 23244384 -78628785 + MIR SINE MIR 53 250 -12 1191 158 79 0 chr13 23244664 23244866 -78628303 + MER58A DNA MER1_type 1 218 -6 255 311 119 37 chr13 23245485 23245729 -78627440 - L2 LINE L2 -653 2661 2398 1200 107 40 0 chr13 23245774 23245951 -78627218 - L1MB2 LINE L1 -3 6168 5985 254 314 57 19 chr13 23246074 23246179 -78626990 - L2 LINE L2 0 3272 3164 1786 235 21 41 chr13 23246774 23247242 -78625927 + MER20B DNA MER1_type 33 491 -292 597 157 0 0 chr13 23247402 23247491 -78625678 + AluSg/x SINE Alu 208 296 -16 240 203 43 29 chr13 23247499 23247568 -78625601 + MIR SINE MIR 57 126 -136 408 154 108 15 chr13 23247798 23247928 -78625241 + MER20B DNA MER1_type 568 709 -74 244 288 15 0 chr13 23247929 23247995 -78625174 - MIR SINE MIR -75 133 67 353 350 126 37 chr13 23248066 23248495 -78624674 - L2 LINE L2 -2 3270 2804 195 303 134 79 chr13 23248627 23249007 -78624162 - L2 LINE L2 -694 2620 2220 287 288 230 7 chr13 23249015 23249154 -78624015 - MIR SINE MIR -70 192 23 1012 181 0 0 chr13 23251026 23251197 -78621972 - FRAM SINE Alu -7 169 1 196 326 101 11 chr13 23251676 23251765 -78621404 - L2 LINE L2 -25 3288 3192 432 258 198 22 chr13 23252052 23252234 -78620935 - MIR SINE MIR -18 244 31 1750 185 0 13 chr13 23253916 23254218 -78618951 + AluJo SINE Alu 1 298 -14 399 285 107 69 chr13 23255173 23255492 -78617677 - L2 LINE L2 0 3272 2942 355 310 53 103 chr13 23256240 23256708 -78616461 + L2 LINE L2 2824 3268 -4 252 240 140 0 chr13 23257326 23257426 -78615743 - MER103 DNA DNA -2 164 51 258 32 0 0 chr13 23257549 23257580 -78615589 + (CA)n Simple_repeat Simple_repeat 2 32 0 214 158 0 0 chr13 23257969 23258007 -78615162 + CT-rich Low_complexity Low_complexity 1 38 0 193 29 59 0 chr13 23259030 23259064 -78614105 + (TA)n Simple_repeat Simple_repeat 2 37 0 1292 113 61 19 chr13 23259574 23259821 -78613348 + L1PA11 LINE L1 5940 6195 0 2213 129 0 0 chr13 23259903 23260212 -78612957 + AluSx SINE Alu 3 311 -1 213 297 30 69 chr13 23260492 23260593 -78612576 + MIR SINE MIR 15 111 -151 770 198 111 0 chr13 23261011 23261183 -78611986 + MIR SINE MIR 7 197 -65 530 317 6 28 chr13 23261181 23261361 -78611808 - MIR SINE MIR -73 189 14 * 228 271 0 0 chr13 23261650 23261698 -78611471 + polypurine Low_complexity Low_complexity 3 50 0 238 290 62 92 chr13 23261782 23262054 -78611115 - L2 LINE L2 -1491 1823 1560 588 65 0 0 chr13 23262090 23262167 -78611002 + (GGATG)n Simple_repeat Simple_repeat 5 81 0 249 33 0 0 chr13 23262167 23262197 -78610972 - MLT2A2 LTR ERVL 0 453 424 9475 70 6 1 chr13 23262198 23263374 -78609795 - HERVL-A1 LTR ERVL -4472 1182 1 3177 69 72 19 chr13 23263374 23263420 -78609749 - MLT2A1 LTR ERVL 0 444 402 441 97 0 0 chr13 23263420 23263492 -78609677 + (TA)n Simple_repeat Simple_repeat 2 73 0 3177 69 72 19 chr13 23263492 23263863 -78609306 - MLT2A1 LTR ERVL -42 402 5 306 212 15 15 chr13 23263916 23263982 -78609187 - MER112 DNA MER1_type -186 74 9 232 230 0 54 chr13 23264152 23264226 -78608943 - L2 LINE L2 -1 3312 3243 2017 124 7 7 chr13 23265071 23265383 -78607786 - AluSq SINE Alu 0 313 1 211 262 33 0 chr13 23265383 23265444 -78607725 - MIR3 SINE MIR -54 154 92 197 278 134 12 chr13 23266391 23266496 -78606673 - MIR SINE MIR -62 146 27 242 309 203 0 chr13 23267808 23267931 -78605238 + MIR SINE MIR 16 163 -99 341 204 9 3 chr13 23269542 23269679 -78603490 + MER96B DNA MER1_type? 1 176 -241 201 121 30 15 chr13 23269905 23269971 -78603198 + (TTTA)n Simple_repeat Simple_repeat 4 70 0 21 82 0 0 chr13 23269977 23270026 -78603143 + AT_rich Low_complexity Low_complexity 1 49 0 2375 97 0 0 chr13 23270028 23270326 -78602843 + AluSx SINE Alu 1 298 -14 25 31 0 0 chr13 23270343 23270375 -78602794 + AT_rich Low_complexity Low_complexity 1 32 0 251 143 24 0 chr13 23270392 23270434 -78602735 + MER96B DNA MER1_type? 190 232 -185 1655 174 36 44 chr13 23270670 23270804 -78602365 + MLT1A1 LTR MaLR 2 136 -229 2579 125 80 10 chr13 23270804 23271204 -78601965 - MSTA LTR MaLR 0 428 1 1655 174 36 44 chr13 23271204 23271432 -78601737 + MLT1A1 LTR MaLR 136 361 -4 219 204 0 0 chr13 23271451 23271500 -78601669 + (TG)n Simple_repeat Simple_repeat 2 50 0 1843 114 4 46 chr13 23272543 23272824 -78600345 - AluSx SINE Alu -17 295 27 474 357 43 4 chr13 23272987 23273222 -78599947 - MIR SINE MIR 0 262 19 424 272 24 0 chr13 23274037 23274162 -78599007 - MER94 DNA DNA -5 129 2 309 215 108 39 chr13 23275742 23275872 -78597297 - MLT1H LTR MaLR -375 174 36 275 280 0 0 chr13 23275891 23275966 -78597203 - L1P4 LINE L1 -361 5805 5731 238 248 37 55 chr13 23276001 23276110 -78597059 - MIR SINE MIR -70 192 86 3052 163 62 85 chr13 23276934 23277678 -78595491 - LTR8A LTR ERV1 0 727 1 2084 250 50 44 chr13 23277678 23278335 -78594834 - HUERS-P1 LTR ERV1 0 6263 5603 4782 148 88 42 chr13 23278345 23278399 -78594770 - HUERS-P1 LTR ERV1 -2862 5258 5208 2259 102 3 7 chr13 23278399 23278694 -78594475 + AluSq SINE Alu 1 294 -19 4782 148 88 42 chr13 23278694 23279690 -78593479 - HUERS-P1 LTR ERV1 -2912 5208 2326 189 107 0 0 chr13 23279697 23279725 -78593444 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3577 91 12 4 chr13 23279725 23280211 -78592958 - L1PB1 LINE L1 -6 6145 5656 5107 123 17 5 chr13 23280219 23282599 -78590570 - L1PBa LINE L1 -2988 3874 1417 414 298 117 5 chr13 23282817 23283005 -78590164 - MER21B LTR ERV1 -633 230 22 427 193 0 34 chr13 23283029 23283117 -78590052 - MER21B LTR ERV1 -773 90 6 1889 214 59 4 chr13 23283157 23283644 -78589525 + L1MD3 LINE L1 5397 5809 -357 1827 179 153 37 chr13 23283659 23284150 -78589019 + LTR10A LTR ERV1 1 548 -61 556 244 39 12 chr13 23284157 23284375 -78588794 + L1MA10 LINE L1 5944 6323 -5 3439 132 29 61 chr13 23284453 23285076 -78588093 - LTR26 LTR ERV1 0 603 1 486 244 141 6 chr13 23285411 23285567 -78587602 - MER5B DNA MER1_type -1 177 1 321 211 70 47 chr13 23285826 23285954 -78587215 - L1ME4a LINE L1 -9 6112 5982 1795 171 10 3 chr13 23286078 23286388 -78586781 - AluSx SINE Alu 0 312 1 350 305 73 28 chr13 23287543 23287720 -78585449 - L2 LINE L2 -2 3311 3127 500 211 178 11 chr13 23288254 23288439 -78584730 + LTR16C LTR ERVL 274 489 -2 676 258 15 78 chr13 23288727 23288816 -78584353 + MIR SINE MIR 9 102 -160 2278 155 58 19 chr13 23288816 23289228 -78583941 + MSTA LTR MaLR 1 428 0 676 258 15 78 chr13 23289228 23289406 -78583763 + MIR SINE MIR 102 259 -3 684 271 122 37 chr13 23289658 23290094 -78583075 - L1ME4a LINE L1 -115 6006 5534 180 260 67 29 chr13 23291238 23291342 -78581827 - L3 LINE CR1 -417 1160 1053 607 213 133 76 chr13 23291543 23291979 -78581190 + L1ME4a LINE L1 5661 6121 0 2155 83 7 7 chr13 23292103 23292393 -78580776 - AluSg SINE Alu -18 292 3 2198 93 4 0 chr13 23293333 23293657 -78579512 - AluSp SINE Alu 0 326 2 324 0 0 0 chr13 23293667 23293703 -78579466 + (T)n Simple_repeat Simple_repeat 1 36 0 533 268 20 40 chr13 23294096 23294294 -78578875 + MIR SINE MIR 61 254 -8 584 221 6 37 chr13 23294699 23294862 -78578307 + MIR SINE MIR 104 261 -1 195 310 50 30 chr13 23294917 23295017 -78578152 + MIR SINE MIR 88 189 -73 212 0 36 0 chr13 23295059 23295087 -78578082 + (TTG)n Simple_repeat Simple_repeat 2 30 0 291 54 0 0 chr13 23295093 23295130 -78578039 + (TG)n Simple_repeat Simple_repeat 2 38 0 2127 92 11 14 chr13 23295130 23295414 -78577755 - AluSc SINE Alu -26 283 1 521 229 11 11 chr13 23296026 23296201 -78576968 + GA-rich Low_complexity Low_complexity 3 177 0 306 331 60 0 chr13 23296900 23297051 -78576118 - MIR SINE MIR -7 255 96 409 194 142 37 chr13 23297618 23297752 -78575417 + MIR SINE MIR 89 236 -26 180 271 0 0 chr13 23298335 23298383 -78574786 - L2 LINE L2 0 3313 3266 1932 132 86 9 chr13 23298427 23298775 -78574394 - THE1C LTR MaLR 0 375 1 188 301 58 39 chr13 23298817 23298973 -78574196 - L2 LINE L2 -292 3021 2863 959 189 43 56 chr13 23298974 23299039 -78574130 + MER96B DNA MER1_type? 1 65 -352 2271 106 0 7 chr13 23299039 23299341 -78573828 + AluSx SINE Alu 1 300 -12 959 189 43 56 chr13 23299341 23299508 -78573661 + MER96B DNA MER1_type? 65 230 -187 328 183 0 16 chr13 23299513 23299592 -78573577 - MER96B DNA MER1_type? -102 73 1 216 373 9 9 chr13 23300103 23300213 -78572956 + MIR SINE MIR 39 148 -114 279 268 83 51 chr13 23301165 23301322 -78571847 - MER20B DNA MER1_type -616 167 6 288 359 0 8 chr13 23301455 23301572 -78571597 + MIR SINE MIR 77 192 -70 365 314 69 0 chr13 23303316 23303504 -78569665 + MIR SINE MIR 62 262 0 4174 57 2 4 chr13 23304037 23304560 -78568609 + L1PA8 LINE L1 5650 6171 -1 501 17 0 0 chr13 23304713 23304771 -78568398 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 675 94 0 0 chr13 23304773 23304869 -78568300 + (GGAAA)n Simple_repeat Simple_repeat 4 99 0 1226 80 11 0 chr13 23304876 23305051 -78568118 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 644 115 21 0 chr13 23306011 23306107 -78567062 + AluJo SINE Alu 37 134 -178 22 35 0 0 chr13 23306158 23306187 -78566982 + AT_rich Low_complexity Low_complexity 1 29 0 257 288 172 18 chr13 23306257 23306694 -78566475 + L1M4 LINE L1 2311 2814 -3332 * 1268 215 37 44 chr13 23306675 23306719 -78566450 + L1M4 LINE L1 3346 3389 -2757 3537 118 39 0 chr13 23306719 23307226 -78565943 - MER1A DNA MER1_type 0 527 1 1268 215 37 44 chr13 23307226 23307586 -78565583 + L1M4 LINE L1 3389 3747 -2399 828 220 24 43 chr13 23307591 23307800 -78565369 + MER6B DNA MER2_type 6 210 0 526 226 16 16 chr13 23307800 23307924 -78565245 + L1M4 LINE L1 3746 3869 -2277 * 3666 178 27 19 chr13 23307919 23308789 -78564380 + L1M4 LINE L1 4597 5480 -694 246 32 0 0 chr13 23308789 23308820 -78564349 + (CA)n Simple_repeat Simple_repeat 2 32 0 3666 178 27 19 chr13 23308820 23309011 -78564158 + L1M4 LINE L1 5480 5668 -506 284 280 17 8 chr13 23309542 23309660 -78563509 - MIR SINE MIR -14 248 130 271 238 0 0 chr13 23309666 23309729 -78563440 - MIR SINE MIR 0 262 200 820 215 176 20 chr13 23309758 23310064 -78563105 + MLT1I LTR MaLR 72 390 -19 203 250 47 0 chr13 23310083 23310147 -78563022 - MIR SINE MIR -59 203 137 627 264 90 41 chr13 23310775 23310827 -78562342 - MIR SINE MIR 0 262 214 2515 76 0 0 chr13 23310827 23311128 -78562041 - AluSx SINE Alu -11 301 1 627 264 90 41 chr13 23311128 23311325 -78561844 - MIR SINE MIR -48 214 4 246 247 12 24 chr13 23311690 23311775 -78561394 + L2 LINE L2 3230 3313 0 2671 58 81 0 chr13 23311895 23312242 -78560927 + THE1C LTR MaLR 1 375 0 734 184 153 0 chr13 23313183 23313346 -78559823 - MER5A DNA MER1_type -1 188 1 219 267 13 27 chr13 23313422 23313497 -78559672 - MIR SINE MIR -169 93 20 180 0 0 0 chr13 23314052 23314072 -78559097 + (T)n Simple_repeat Simple_repeat 1 20 0 380 279 104 7 chr13 23316150 23316304 -78556865 - MIR3 SINE MIR -8 200 32 1926 137 0 11 chr13 23316450 23316734 -78556435 - AluJo SINE Alu -17 295 15 21 0 0 0 chr13 23316734 23316755 -78556414 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr13 23316900 23316935 -78556234 + (T)n Simple_repeat Simple_repeat 1 35 0 425 132 22 33 chr13 23317481 23317572 -78555597 + MER53 DNA DNA 93 182 -7 * 540 108 21 21 chr13 23317495 23317588 -78555581 - MER53 DNA DNA -96 93 1 549 262 139 18 chr13 23318043 23318270 -78554899 - MIR SINE MIR -9 253 9 234 273 65 0 chr13 23318533 23318610 -78554559 - MER5A DNA MER1_type -12 177 96 1956 89 100 4 chr13 23318621 23318890 -78554279 + AluSx SINE Alu 1 295 -17 276 314 69 0 chr13 23319002 23319104 -78554065 + L2 LINE L2 3145 3253 -19 1826 116 7 25 chr13 23320062 23320197 -78552972 + AluSg SINE Alu 1 137 -173 2410 96 0 3 chr13 23320197 23320510 -78552659 + AluSq SINE Alu 1 312 -1 1826 116 7 25 chr13 23320510 23320658 -78552511 + AluSg SINE Alu 137 279 -31 21 0 0 0 chr13 23320738 23320759 -78552410 + AT_rich Low_complexity Low_complexity 1 21 0 259 325 12 0 chr13 23321147 23321227 -78551942 + MIR SINE MIR 58 138 -124 498 269 9 104 chr13 23321613 23321825 -78551344 + MIR SINE MIR 33 224 -38 1000 172 5 32 chr13 23323278 23323464 -78549705 - AluJo SINE Alu -12 300 120 5012 16 0 0 chr13 23323490 23324050 -78549119 - L1PA2 LINE L1 -3 6152 5593 1573 206 58 3 chr13 23324150 23324510 -78548659 + L1MB4 LINE L1 5793 6172 -8 256 189 0 0 chr13 23324606 23324659 -78548510 + L1MCc LINE L1 1410 1462 -4961 962 112 0 0 chr13 23324670 23324795 -78548374 - AluSq SINE Alu -78 235 111 1564 268 105 10 chr13 23324804 23325479 -78547690 + L1MCc LINE L1 2926 3664 -3277 30 0 0 0 chr13 23325722 23325752 -78547417 + AT_rich Low_complexity Low_complexity 1 30 0 255 290 29 0 chr13 23325889 23325958 -78547211 - L2 LINE L2 -3 3269 3199 1426 153 9 113 chr13 23326126 23326453 -78546716 - AluJb SINE Alu -9 293 1 272 27 27 0 chr13 23326575 23326612 -78546557 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 189 143 29 0 chr13 23327006 23327041 -78546128 + L2 LINE L2 3266 3301 -12 509 267 82 0 chr13 23327358 23327504 -78545665 - MIR SINE MIR -2 260 103 181 333 148 30 chr13 23327587 23327890 -78545279 - L2 LINE L2 -1117 2197 1859 279 0 0 0 chr13 23327938 23327969 -78545200 + (TC)n Simple_repeat Simple_repeat 2 32 0 234 0 0 0 chr13 23328795 23328821 -78544348 + (A)n Simple_repeat Simple_repeat 1 26 0 1215 283 60 22 chr13 23330842 23331611 -78541558 + L2 LINE L2 2518 3312 -1 181 196 39 59 chr13 23331619 23331670 -78541499 - MIR SINE MIR -209 53 4 236 286 9 54 chr13 23331911 23332023 -78541146 + L2 LINE L2 3121 3227 -86 388 277 21 0 chr13 23332522 23332616 -78540553 + MER117 DNA MER1_type 101 196 -1 1778 175 0 19 chr13 23334137 23334445 -78538724 + AluJb SINE Alu 1 302 -10 318 239 29 142 chr13 23335226 23335465 -78537704 - MIR SINE MIR -16 246 35 2087 142 3 0 chr13 23336104 23336400 -78536769 - AluSx SINE Alu -15 297 1 340 329 41 7 chr13 23336423 23336569 -78536600 + MIR SINE MIR 30 180 -82 268 220 30 50 chr13 23336873 23336974 -78536195 - LTR67 LTR ERVL -14 509 412 1903 137 3 27 chr13 23337969 23338262 -78534907 - AluSx SINE Alu -26 286 1 23 0 0 0 chr13 23338300 23338323 -78534846 + AT_rich Low_complexity Low_complexity 1 23 0 3285 228 88 53 chr13 23338652 23339884 -78533285 - L1MC5 LINE L1 -30 7931 6656 512 199 65 111 chr13 23339905 23340211 -78532958 - L1MC5 LINE L1 -371 7590 7299 21994 66 11 5 chr13 23341824 23344823 -78528346 + L1P2 LINE L1 2460 5474 -680 1885 124 0 0 chr13 23345169 23345426 -78527743 + AluSx SINE Alu 1 257 -55 492 266 28 0 chr13 23346245 23346388 -78526781 + MER103 DNA DNA 3 149 -17 2255 126 0 0 chr13 23347706 23348008 -78525161 - AluSg SINE Alu -8 302 1 2352 130 0 23 chr13 23348099 23348444 -78524725 - MER1B DNA MER1_type 0 337 1 1342 112 0 0 chr13 23348665 23348843 -78524326 - AluSg/x SINE Alu -8 302 125 715 281 114 48 chr13 23348866 23349279 -78523890 + MLT1J1 LTR MaLR 1 440 -6 337 276 41 32 chr13 23349315 23349438 -78523731 + MIR SINE MIR 2 125 -137 21 57 0 0 chr13 23349861 23349896 -78523273 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 23350136 23350158 -78523011 + AT_rich Low_complexity Low_complexity 1 22 0 342 0 0 0 chr13 23350929 23350967 -78522202 + (CA)n Simple_repeat Simple_repeat 2 39 0 330 87 0 0 chr13 23352047 23352093 -78521076 + (TG)n Simple_repeat Simple_repeat 2 47 0 748 356 76 7 chr13 23352934 23353367 -78519802 + L3 LINE CR1 945 1407 -170 279 336 0 0 chr13 23353923 23354027 -78519142 + L3 LINE CR1 1466 1569 -8 194 108 0 27 chr13 23354899 23354936 -78518233 + MER5B DNA MER1_type 66 101 -77 437 254 75 128 chr13 23356214 23356437 -78516732 - L2 LINE L2 -353 2961 2728 432 133 11 33 chr13 23356437 23356527 -78516642 - L1PB4 LINE L1 -1 6155 6068 437 254 75 128 chr13 23356527 23356550 -78516619 - L2 LINE L2 -586 2728 2705 617 68 0 0 chr13 23356550 23356638 -78516531 + L1PB1 LINE L1 6063 6150 -1 437 254 75 128 chr13 23356638 23356683 -78516486 - L2 LINE L2 -609 2705 2659 2393 50 0 0 chr13 23356683 23357004 -78516165 - AluY SINE Alu 0 321 1 437 254 75 128 chr13 23357004 23357232 -78515937 - L2 LINE L2 -655 2659 2467 1440 175 108 16 chr13 23357822 23358137 -78515032 + MER2 DNA MER2_type 1 344 0 428 254 105 74 chr13 23358508 23358831 -78514338 + MLT1I LTR MaLR 70 402 -7 1098 278 66 37 chr13 23359985 23360000 -78513169 - L1ME4a LINE L1 -30 6091 6078 342 0 0 0 chr13 23360000 23360038 -78513131 + (TA)n Simple_repeat Simple_repeat 2 39 0 1098 278 66 37 chr13 23360038 23360565 -78512604 - L1ME4a LINE L1 -43 6078 5533 2243 130 30 16 chr13 23361198 23361568 -78511601 + THE1C LTR MaLR 1 375 0 13880 69 16 8 chr13 23362321 23364948 -78508221 - L1PA6 LINE L1 0 6154 3513 40958 38 26 1 chr13 23365051 23369999 -78503170 - L1P LINE L1 -1074 5072 3 630 172 26 0 chr13 23370021 23370137 -78503032 - FLAM_C SINE Alu -21 122 4 1160 169 113 108 chr13 23370165 23370527 -78502642 - MLT1A1 LTR MaLR 0 365 2 846 222 5 26 chr13 23371120 23371309 -78501860 - MER5A DNA MER1_type -4 185 1 2618 127 43 19 chr13 23371415 23371833 -78501336 + MSTA LTR MaLR 1 428 0 369 369 45 14 chr13 23372106 23372328 -78500841 - MIR SINE MIR -13 249 21 243 250 17 17 chr13 23372635 23372695 -78500474 + MIR SINE MIR 197 256 -6 201 121 0 0 chr13 23372696 23372729 -78500440 + (CAT)n Simple_repeat Simple_repeat 3 35 0 22 0 0 0 chr13 23374855 23374877 -78498292 + AT_rich Low_complexity Low_complexity 1 22 0 556 274 11 11 chr13 23375685 23375864 -78497305 - MIR3 SINE MIR 0 208 30 192 231 0 0 chr13 23376964 23377003 -78496166 + L2 LINE L2 3189 3227 -86 754 210 27 21 chr13 23377208 23377394 -78495775 - MIR SINE MIR -29 233 47 1251 164 0 9 chr13 23378325 23378538 -78494631 - AluJo SINE Alu -14 298 88 2296 108 3 7 chr13 23378538 23378844 -78494325 - AluSx SINE Alu -7 305 1 21 36 0 0 chr13 23378853 23378881 -78494288 + AT_rich Low_complexity Low_complexity 1 28 0 1287 189 0 0 chr13 23378890 23379118 -78494051 - L1MC1 LINE L1 -90 6243 6016 578 236 16 39 chr13 23379407 23379589 -78493580 + MIR SINE MIR 4 181 -81 480 265 105 6 chr13 23379749 23379911 -78493258 - MER5A DNA MER1_type 0 189 12 188 279 0 82 chr13 23380029 23380090 -78493079 - MIR SINE MIR -137 71 16 305 300 39 20 chr13 23382585 23382745 -78490424 + MIR3 SINE MIR 34 199 -9 222 128 0 26 chr13 23382800 23382839 -78490330 - L2 LINE L2 -14 3299 3262 2764 98 0 6 chr13 23383767 23384133 -78489036 + THE1B LTR MaLR 1 364 0 282 349 47 0 chr13 23384273 23384402 -78488767 - MIR SINE MIR -68 194 60 199 200 0 0 chr13 23384914 23384954 -78488215 + L2 LINE L2 3274 3313 0 264 122 0 0 chr13 23385222 23385263 -78487906 + (T)n Simple_repeat Simple_repeat 1 41 0 184 247 182 13 chr13 23385906 23385983 -78487186 + L3 LINE CR1 589 678 -899 232 318 252 8 chr13 23386056 23386298 -78486871 + L2 LINE L2 3012 3312 -1 1162 74 0 0 chr13 23386446 23386594 -78486575 - L1PA8 LINE L1 -63 6109 5962 191 346 62 8 chr13 23386595 23386725 -78486444 + L3 LINE CR1 1279 1415 -162 305 297 8 34 chr13 23386754 23386872 -78486297 + L2 LINE L2 3199 3313 0 317 290 81 81 chr13 23386973 23387068 -78486101 + L2 LINE L2 3148 3245 -27 396 160 122 99 chr13 23387068 23387199 -78485970 + MER94 DNA DNA 1 134 0 317 290 81 81 chr13 23387199 23387227 -78485942 + L2 LINE L2 3244 3271 -1 464 236 75 75 chr13 23387270 23387469 -78485700 - L3 LINE CR1 -198 1379 1181 364 353 14 0 chr13 23388857 23388996 -78484173 + MIR3 SINE MIR 60 200 -8 440 267 145 0 chr13 23389220 23389392 -78483777 + MIR SINE MIR 63 259 -3 2803 44 3 3 chr13 23390318 23390660 -78482509 - L1PA5 LINE L1 -9 6145 5804 1183 77 6 3 chr13 23390660 23390824 -78482345 + L1PA3 LINE L1 5687 5854 -267 2102 129 3 3 chr13 23390976 23391279 -78481890 - AluSx SINE Alu -9 303 1 1785 162 0 0 chr13 23391287 23391553 -78481616 - AluJb SINE Alu -25 287 22 1611 174 0 25 chr13 23391866 23392142 -78481027 - AluJb SINE Alu -43 269 1 1706 197 89 11 chr13 23392211 23392571 -78480598 + MLT1B LTR MaLR 1 388 -2 2286 98 20 0 chr13 23392776 23393071 -78480098 + AluSp SINE Alu 1 301 -12 3132 247 60 40 chr13 23393817 23395450 -78477719 + L1MEc LINE L1 201 1960 -4436 2178 217 99 73 chr13 23395419 23395739 -78477430 + L1MEc LINE L1 3161 3471 -2744 * 2407 106 0 0 chr13 23395739 23396042 -78477127 + AluSq SINE Alu 1 303 -10 2178 217 99 73 chr13 23396042 23396474 -78476695 + L1MEc LINE L1 3471 3944 -2271 2031 68 4 0 chr13 23396474 23396723 -78476446 + AluY SINE Alu 60 309 -2 2178 217 99 73 chr13 23396723 23396889 -78476280 + L1MEc LINE L1 3944 4104 -2111 368 191 12 0 chr13 23396885 23396969 -78476200 + L1M4 LINE L1 4975 5059 -1087 * 343 239 209 0 chr13 23397460 23397594 -78475575 - MIR SINE MIR -27 235 74 2309 91 3 0 chr13 23398467 23398765 -78474404 - AluY SINE Alu -12 299 1 414 239 178 17 chr13 23399188 23399461 -78473708 + MLT1J2 LTR MaLR 4 329 -117 1883 181 12 35 chr13 23399718 23400117 -78473052 + MLT1B LTR MaLR 1 390 0 208 309 89 32 chr13 23401587 23401710 -78471459 - L2 LINE L2 0 3313 3184 2689 29 3 19 chr13 23401727 23402043 -78471126 + AluY SINE Alu 1 311 0 583 299 64 0 chr13 23403112 23403299 -78469870 + MIR SINE MIR 28 226 -36 276 212 40 61 chr13 23404012 23404111 -78469058 - MIR SINE MIR -91 117 21 399 232 36 51 chr13 23404212 23404350 -78468819 - L2 LINE L2 -24 3289 3154 243 0 0 0 chr13 23405321 23405348 -78467821 + (T)n Simple_repeat Simple_repeat 1 27 0 1648 209 71 23 chr13 23405761 23406154 -78467015 - MLT2D LTR ERVL 0 414 3 405 0 0 0 chr13 23406207 23406252 -78466917 + (CA)n Simple_repeat Simple_repeat 1 45 0 243 0 0 0 chr13 23406490 23406517 -78466652 + (CA)n Simple_repeat Simple_repeat 1 27 0 658 213 72 23 chr13 23406532 23406753 -78466416 + MIR SINE MIR 1 232 -30 228 67 0 0 chr13 23407032 23407062 -78466107 + (T)n Simple_repeat Simple_repeat 1 30 0 444 212 174 65 chr13 23407627 23407811 -78465358 - MIR SINE MIR -3 259 56 614 281 51 41 chr13 23408010 23408402 -78464767 - L1ME4a LINE L1 -20 6101 5706 836 150 0 0 chr13 23408408 23408541 -78464628 + L1MA8 LINE L1 6154 6286 -5 26 0 0 0 chr13 23408541 23408567 -78464602 + AT_rich Low_complexity Low_complexity 1 26 0 240 301 26 53 chr13 23410112 23410225 -78462944 - MIR SINE MIR -62 146 37 2895 167 93 66 chr13 23411714 23412422 -78460747 + LTR8A LTR ERV1 1 727 0 612 321 5 27 chr13 23412422 23412646 -78460523 + HUERS-P1 LTR ERV1 1 219 -6044 4641 182 81 45 chr13 23412730 23413981 -78459188 + HUERS-P1 LTR ERV1 364 1615 -4648 3239 219 75 80 chr13 23413968 23414142 -78459027 + MER83B-int LTR ERV1 768 941 -5551 * 225 0 0 0 chr13 23414142 23414167 -78459002 + (TAA)n Simple_repeat Simple_repeat 1 25 0 3239 219 75 80 chr13 23414167 23414769 -78458400 + MER83B-int LTR ERV1 941 1544 -4948 2165 137 0 0 chr13 23414769 23415068 -78458101 - AluSx SINE Alu -13 299 1 3239 219 75 80 chr13 23415068 23416022 -78457147 + MER83B-int LTR ERV1 1544 3409 -3083 234 184 20 0 chr13 23416023 23416072 -78457097 + MER34C LTR ERV1 170 219 -366 4316 145 16 20 chr13 23416121 23417052 -78456117 + MER83B-int LTR ERV1 1843 3016 -1864 2100 140 0 0 chr13 23417052 23417344 -78455825 + AluSx SINE Alu 1 292 -20 1942 146 0 3 chr13 23417585 23417872 -78455297 - AluJb SINE Alu -16 296 11 5152 221 27 22 chr13 23417890 23418903 -78454266 - L1M4 LINE L1 -1480 4666 3644 1467 88 48 0 chr13 23418903 23419131 -78454038 - L1MA5A LINE L1 -4 6293 6055 5152 221 27 22 chr13 23419131 23419470 -78453699 - L1M4 LINE L1 -2502 3644 3308 723 173 53 132 chr13 23419480 23419608 -78453561 - Charlie2 DNA MER1_type -70 2792 2655 2306 95 7 0 chr13 23419608 23419902 -78453267 + AluSc SINE Alu 1 296 -13 723 173 53 132 chr13 23419902 23420024 -78453145 - Charlie2 DNA MER1_type -207 2655 2574 806 139 46 0 chr13 23420024 23420175 -78452994 - L1MA8 LINE L1 0 6291 6134 723 173 53 132 chr13 23420175 23420265 -78452904 - Charlie2 DNA MER1_type -288 2574 2478 1827 202 16 21 chr13 23420278 23420708 -78452461 - Charlie2 DNA MER1_type -579 2283 1856 730 276 98 20 chr13 23420711 23421008 -78452161 - Charlie2 DNA MER1_type -2538 324 5 1169 221 18 27 chr13 23421025 23421403 -78451766 - L2 LINE L2 -263 3050 2676 376 327 133 15 chr13 23421738 23422129 -78451040 - LTR16A1 LTR ERVL -5 452 16 678 212 150 49 chr13 23422748 23423135 -78450034 + L1MC5 LINE L1 7506 7931 -30 208 239 138 138 chr13 23424876 23424985 -78448184 - L2 LINE L2 -18 3254 3146 287 284 39 0 chr13 23425081 23425183 -78447986 - MIR SINE MIR -65 197 92 1764 163 153 12 chr13 23425805 23426210 -78446959 - MLT1C LTR MaLR 0 467 6 188 345 72 58 chr13 23426544 23426588 -78446581 - L2 LINE L2 0 3272 3230 2221 96 10 0 chr13 23426588 23426879 -78446290 - AluSp SINE Alu -19 294 1 188 345 72 58 chr13 23426879 23426973 -78446196 - L2 LINE L2 -42 3230 3132 1848 135 39 7 chr13 23427318 23427621 -78445548 - AluSx SINE Alu 0 312 1 1817 161 3 10 chr13 23427725 23428029 -78445140 + AluJo SINE Alu 9 310 -2 1039 242 206 32 chr13 23428778 23429240 -78443929 - MLT1G LTR MaLR -2 588 47 236 208 0 52 chr13 23429777 23429854 -78443315 + GA-rich Low_complexity Low_complexity 3 75 0 3911 79 20 4 chr13 23430599 23431104 -78442065 - L1PA10 LINE L1 -4 6164 5652 3883 96 13 8 chr13 23431104 23431955 -78441214 + L1PA10 LINE L1 4795 5646 -522 * 4719 161 25 26 chr13 23431953 23433260 -78439909 - L1MB8 LINE L1 -5 6173 4869 323 65 0 0 chr13 23433291 23433337 -78439832 - L1MB4 LINE L1 -7 6173 6128 1682 147 68 0 chr13 23433346 23433640 -78439529 - AluJb SINE Alu 0 312 1 721 221 51 32 chr13 23433734 23433951 -78439218 - MIR SINE MIR -32 230 10 416 266 260 16 chr13 23433972 23434164 -78439005 - MIR SINE MIR -21 241 3 203 259 37 62 chr13 23434607 23434688 -78438481 - MIR3 SINE MIR -39 169 91 2402 93 0 3 chr13 23435084 23435386 -78437783 + AluSc SINE Alu 1 301 -8 357 235 174 0 chr13 23437691 23437789 -78435380 - MIR SINE MIR -101 161 47 180 0 0 0 chr13 23438316 23438336 -78434833 + (A)n Simple_repeat Simple_repeat 1 20 0 249 56 111 0 chr13 23438474 23438510 -78434659 + L1MA6 LINE L1 6160 6199 -101 516 174 10 0 chr13 23438707 23438805 -78434364 + L1MA5 LINE L1 6202 6300 0 210 200 346 85 chr13 23438814 23438944 -78434225 + MER5A DNA MER1_type 26 189 0 1887 145 3 7 chr13 23439293 23439576 -78433593 + AluJo SINE Alu 6 287 -25 414 259 71 0 chr13 23439786 23439898 -78433271 + MIR3 SINE MIR 37 156 -52 1943 156 0 13 chr13 23440947 23441255 -78431914 + AluJo SINE Alu 1 304 -8 1975 140 0 17 chr13 23442268 23442561 -78430608 + AluSx SINE Alu 1 288 -24 2027 142 0 3 chr13 23445157 23445452 -78427717 - AluSx SINE Alu -18 294 1 391 308 140 14 chr13 23447953 23448167 -78425002 + MER112 DNA MER1_type 3 243 -17 270 0 0 0 chr13 23448901 23448931 -78424238 + (TG)n Simple_repeat Simple_repeat 1 30 0 1631 162 0 80 chr13 23449619 23449933 -78423236 - AluJb SINE Alu -23 289 1 12783 121 35 50 chr13 23450118 23452299 -78420870 + Tigger1 DNA MER2_type 272 2418 0 619 294 20 15 chr13 23453777 23453981 -78419188 - MIR SINE MIR -46 216 12 255 289 13 0 chr13 23455592 23455668 -78417501 - MER103 DNA DNA -77 89 13 224 170 19 0 chr13 23456550 23456603 -78416566 + (TTCTG)n Simple_repeat Simple_repeat 2 55 0 360 336 79 0 chr13 23458279 23458419 -78414750 - MIR SINE MIR -100 162 12 1338 192 0 33 chr13 23459047 23459323 -78413846 - AluJo SINE Alu -45 267 1 334 26 0 0 chr13 23460204 23460243 -78412926 - L1PA8 LINE L1 -7 6165 6127 1607 58 0 0 chr13 23463211 23463400 -78409769 - L1PA5 LINE L1 -6 6148 5960 186 71 0 0 chr13 23464250 23464278 -78408891 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2170 86 7 4 chr13 23464281 23464559 -78408610 - AluSc SINE Alu -30 279 1 792 169 0 0 chr13 23464681 23464805 -78408364 + FLAM_C SINE Alu 3 126 -17 290 325 25 0 chr13 23465685 23465765 -78407404 + MIR3 SINE MIR 108 189 -19 2239 106 0 0 chr13 23466610 23466902 -78406267 - AluSg SINE Alu -18 292 1 293 245 92 61 chr13 23467116 23467214 -78405955 + MIR SINE MIR 92 192 -70 230 165 52 52 chr13 23467804 23467901 -78405268 - Charlie7 DNA MER1_type -78 2534 2438 2306 87 0 7 chr13 23467911 23468210 -78404959 + AluSg SINE Alu 1 297 -13 189 247 62 37 chr13 23468845 23468926 -78404243 - MIR SINE MIR -49 213 131 * 288 247 100 108 chr13 23468911 23469170 -78403999 - L2 LINE L2 -4 3268 3012 181 301 142 9 chr13 23469284 23469397 -78403772 + L2 LINE L2 3141 3268 -4 225 0 0 0 chr13 23471776 23471801 -78401368 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 2350 230 76 10 chr13 23472703 23473298 -78399871 + MER69 DNA AcHobo 56 689 -537 555 168 90 13 chr13 23473330 23473485 -78399684 + MER69 DNA AcHobo 1652 1818 -708 246 116 0 0 chr13 23474285 23474328 -78398841 + (TG)n Simple_repeat Simple_repeat 1 43 0 232 387 45 9 chr13 23474457 23474568 -78398601 - L2 LINE L2 -14 3258 3144 324 0 0 0 chr13 23475423 23475459 -78397710 + (TG)n Simple_repeat Simple_repeat 2 37 0 186 43 0 0 chr13 23475920 23475943 -78397226 + (ATG)n Simple_repeat Simple_repeat 1 23 0 314 353 8 17 chr13 23476031 23476150 -78397019 - MIR SINE MIR -143 119 2 3942 126 42 11 chr13 23476373 23477014 -78396155 - L1MA5 LINE L1 0 6300 5640 2964 81 8 0 chr13 23477205 23477577 -78395592 - THE1C LTR MaLR 0 375 1 2502 78 0 0 chr13 23478156 23478465 -78394704 - AluY SINE Alu -2 309 1 2134 129 20 0 chr13 23478846 23479149 -78394020 - AluSp SINE Alu -4 309 1 31 0 0 0 chr13 23479290 23479321 -78393848 + AT_rich Low_complexity Low_complexity 1 31 0 212 345 95 55 chr13 23479701 23480049 -78393120 - L2 LINE L2 -48 3224 2863 213 213 0 0 chr13 23480084 23480131 -78393038 + (TG)n Simple_repeat Simple_repeat 2 48 0 1029 108 27 0 chr13 23480167 23480315 -78392854 + L1PA7 LINE L1 6002 6153 -1 614 293 167 0 chr13 23480949 23481284 -78391885 + LTR16A LTR ERVL 57 447 -3 384 272 64 50 chr13 23481416 23481578 -78391591 + MIR SINE MIR 1 162 -67 242 220 20 0 chr13 23482028 23482078 -78391091 + L2 LINE L2 3217 3267 -5 1943 183 83 15 chr13 23482748 23483207 -78389962 + L1MD1 LINE L1 5746 6235 -7 275 219 31 0 chr13 23483208 23483272 -78389897 - Charlie8 DNA MER1_type -2140 277 212 234 0 0 0 chr13 23483815 23483841 -78389328 + (TC)n Simple_repeat Simple_repeat 2 27 0 228 184 0 0 chr13 23483864 23483913 -78389256 + GA-rich Low_complexity Low_complexity 2 50 0 1152 223 20 24 chr13 23484142 23484389 -78388780 + MIR SINE MIR 16 261 -1 297 311 78 0 chr13 23484925 23485028 -78388141 + MIR SINE MIR 43 153 -55 726 235 93 0 chr13 23485058 23485220 -78387949 - MER45A DNA AcHobo -1 177 1 2245 112 3 6 chr13 23485312 23485625 -78387544 - AluSx SINE Alu 0 312 1 2470 166 24 7 chr13 23486035 23486452 -78386717 - MSTB LTR MaLR 0 426 3 203 268 0 0 chr13 23486984 23487025 -78386144 + polypurine Low_complexity Low_complexity 4 44 0 24 0 0 0 chr13 23487575 23487599 -78385570 + AT_rich Low_complexity Low_complexity 1 24 0 348 282 43 91 chr13 23488077 23488286 -78384883 - MIR SINE MIR -50 212 14 2353 91 3 0 chr13 23489596 23489904 -78383265 + AluSx SINE Alu 1 309 -3 499 278 75 12 chr13 23489934 23490107 -78383062 + MIR SINE MIR 39 222 -40 1877 128 7 34 chr13 23490714 23491042 -78382127 + AluJo SINE Alu 3 312 0 571 303 72 5 chr13 23491199 23491394 -78381775 - MIR SINE MIR -51 211 4 325 316 87 52 chr13 23491466 23491893 -78381276 + L2 LINE L2 2830 3271 -1 282 329 58 19 chr13 23492139 23492294 -78380875 - MIR3 SINE MIR -37 171 11 201 320 138 22 chr13 23492948 23493129 -78380040 - MIR3 SINE MIR -4 204 3 598 299 119 29 chr13 23493462 23494130 -78379039 + L2 LINE L2 2231 3226 -87 397 230 158 48 chr13 23494877 23495100 -78378069 - MIR SINE MIR -11 251 14 340 209 15 0 chr13 23495139 23495206 -78377963 + MER81 DNA DNA 40 107 -7 2008 132 148 8 chr13 23495480 23495852 -78377317 + MSTA LTR MaLR 1 424 -4 271 269 0 77 chr13 23496501 23496605 -78376564 + MER5A DNA MER1_type 94 189 0 300 308 81 75 chr13 23497130 23497490 -78375679 + L2 LINE L2 2911 3272 0 190 250 0 58 chr13 23498357 23498409 -78374760 - MIR SINE MIR -108 154 106 1431 94 5 28 chr13 23500732 23500944 -78372225 + AluJb SINE Alu 86 292 -20 334 312 47 53 chr13 23501325 23501495 -78371674 + L1MDa LINE L1 2473 2641 -3899 225 229 0 21 chr13 23501682 23501730 -78371439 + L2 LINE L2 3150 3196 -76 521 213 0 9 chr13 23501985 23502093 -78371076 + MIR SINE MIR 36 142 -120 261 0 0 0 chr13 23502094 23502123 -78371046 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2292 264 123 45 chr13 23502124 23502842 -78370327 - L2 LINE L2 -8 3305 2645 2453 93 0 0 chr13 23502842 23503152 -78370017 - AluSx SINE Alu -2 310 1 2292 264 123 45 chr13 23503152 23503695 -78369474 - L2 LINE L2 -668 2645 1938 209 242 21 116 chr13 23503687 23503782 -78369387 + MIR SINE MIR 177 262 0 * 2673 140 20 40 chr13 23503889 23504331 -78368838 + MER31A LTR ERV1 2 434 -51 1854 109 80 14 chr13 23504331 23504607 -78368562 - AluSx SINE Alu -16 296 3 2673 140 20 40 chr13 23504607 23504658 -78368511 + MER31A LTR ERV1 434 485 0 910 264 104 4 chr13 23505091 23505322 -78367847 + MIR SINE MIR 9 262 0 347 353 38 61 chr13 23505966 23506067 -78367102 + MIR SINE MIR 2 104 -158 2054 122 36 42 chr13 23506067 23506403 -78366766 - MER1B DNA MER1_type 0 337 4 347 353 38 61 chr13 23506403 23506562 -78366607 + MIR SINE MIR 104 256 -6 279 345 81 21 chr13 23506604 23506888 -78366281 + L2 LINE L2 2308 2608 -706 229 325 56 19 chr13 23506961 23507121 -78366048 + L2 LINE L2 2836 3001 -312 234 320 131 0 chr13 23507768 23507890 -78365279 - MIR3 SINE MIR -68 140 3 313 345 0 0 chr13 23508504 23508614 -78364555 + (TG)n Simple_repeat Simple_repeat 1 110 0 935 114 8 0 chr13 23508794 23508926 -78364243 + FLAM_C SINE Alu 1 133 0 214 204 61 0 chr13 23509270 23509319 -78363850 + L2 LINE L2 3205 3256 -16 226 180 0 66 chr13 23509399 23509460 -78363709 + Charlie7 DNA MER1_type 45 101 -2511 225 200 140 0 chr13 23509453 23509553 -78363616 + Charlie7 DNA MER1_type 2430 2543 -69 * 254 134 6 29 chr13 23509714 23509753 -78363416 - MLT2B2 LTR ERVL 0 515 477 492 62 0 0 chr13 23509753 23509817 -78363352 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 950 143 6 0 chr13 23509823 23509998 -78363171 + (TGGA)n Simple_repeat Simple_repeat 2 177 0 254 134 6 29 chr13 23509998 23510014 -78363155 - MLT2B2 LTR ERVL -23 492 477 805 157 4 4 chr13 23510027 23510273 -78362896 + (TGGA)n Simple_repeat Simple_repeat 1 246 0 1377 178 62 2 chr13 23510288 23510659 -78362510 - MLT2B2 LTR ERVL -42 473 2 410 338 111 0 chr13 23511140 23511338 -78361831 - MIR SINE MIR -12 250 31 229 347 93 13 chr13 23511365 23511515 -78361654 + L3 LINE CR1 1193 1354 -223 597 14 0 0 chr13 23511570 23511640 -78361529 + (TTATG)n Simple_repeat Simple_repeat 2 71 0 395 264 0 0 chr13 23511750 23511837 -78361332 + L2 LINE L2 3186 3272 0 1691 76 27 4 chr13 23512046 23512271 -78360898 - MER30 DNA MER1_type 0 230 1 646 111 0 2 chr13 23512833 23513069 -78360100 + AluSx SINE Alu 1 284 -25 1764 261 66 16 chr13 23513080 23513629 -78359540 + L1MEc LINE L1 35 610 -5786 2113 204 45 12 chr13 23513630 23514133 -78359036 + L1ME2 LINE L1 5141 5674 -492 1970 191 39 34 chr13 23514133 23514598 -78358571 - MLT1C LTR MaLR 0 467 1 2113 204 45 12 chr13 23514598 23514712 -78358457 + L1ME2 LINE L1 5674 5783 -383 5570 123 52 120 chr13 23514714 23514925 -78358244 + Tigger3b DNA MER2_type 2 226 -2802 2067 128 25 0 chr13 23514925 23515245 -78357924 + L1PB1 LINE L1 5824 6151 0 5570 123 52 120 chr13 23515245 23515842 -78357327 + Tigger3b DNA MER2_type 226 862 -2166 2078 140 0 0 chr13 23515842 23516142 -78357027 - AluSx SINE Alu -12 300 1 5570 123 52 120 chr13 23516142 23516215 -78356954 + Tigger3b DNA MER2_type 862 938 -2090 1921 158 0 34 chr13 23516215 23516538 -78356631 + AluJo SINE Alu 1 312 0 5570 123 52 120 chr13 23516538 23516974 -78356195 + Tigger3b DNA MER2_type 938 1231 0 866 196 116 40 chr13 23516982 23517100 -78356069 + L1ME2 LINE L1 5789 5897 -267 2237 120 0 0 chr13 23517100 23517391 -78355778 + AluSx SINE Alu 1 291 -21 866 196 116 40 chr13 23517391 23517548 -78355621 + L1ME2 LINE L1 5897 6085 -79 1824 173 131 52 chr13 23517548 23518006 -78355163 - MLT1D LTR MaLR 0 505 12 315 158 40 13 chr13 23518009 23518085 -78355084 + L1ME1 LINE L1 6084 6161 -5 2111 143 0 3 chr13 23518278 23518585 -78354584 - AluSx SINE Alu -6 306 1 803 152 49 12 chr13 23518847 23519011 -78354158 - L1MB1 LINE L1 -1 6167 5998 321 89 0 0 chr13 23519440 23519485 -78353684 + (TCCC)n Simple_repeat Simple_repeat 4 48 0 180 111 0 0 chr13 23520048 23520075 -78353094 + (TG)n Simple_repeat Simple_repeat 1 27 0 215 152 0 136 chr13 23520838 23520904 -78352265 - L2 LINE L2 -5 3308 3252 314 306 106 42 chr13 23522154 23522268 -78350901 - L1 LINE L1 -1518 4628 4523 2159 131 7 0 chr13 23522268 23522565 -78350604 - AluSg SINE Alu -11 299 1 314 306 106 42 chr13 23522565 23522734 -78350435 - L1 LINE L1 -1623 4523 4327 1968 106 53 0 chr13 23522806 23523090 -78350079 - AluSc SINE Alu 0 298 1 481 333 78 16 chr13 23523372 23523630 -78349539 + L1M4 LINE L1 3665 3938 -2208 1942 154 3 0 chr13 23524396 23524689 -78348480 + AluJb SINE Alu 3 296 -16 655 205 145 6 chr13 23525073 23525239 -78347930 - MER5A DNA MER1_type 0 189 1 337 263 112 50 chr13 23529896 23530155 -78343014 - L2 LINE L2 -69 3244 2970 236 121 0 0 chr13 23530219 23530251 -78342918 - MLT1C LTR MaLR -2 465 434 3020 178 72 34 chr13 23530251 23530966 -78342203 + Tigger7 DNA MER2_type 1 2566 -21 467 131 9 0 chr13 23530968 23531048 -78342121 - MLT1C LTR MaLR -60 407 245 234 229 0 0 chr13 23531048 23531118 -78342051 + CT-rich Low_complexity Low_complexity 2 71 0 1234 38 5 32 chr13 23531124 23531309 -78341860 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1926 140 0 0 chr13 23531364 23531635 -78341534 - AluSx SINE Alu -41 271 1 1641 127 156 16 chr13 23531635 23531943 -78341226 - MLT1C LTR MaLR -115 352 2 1833 97 4 16 chr13 23532255 23532594 -78340575 - AluSx SINE Alu 0 374 39 25 0 0 0 chr13 23532605 23532630 -78340539 + AT_rich Low_complexity Low_complexity 1 25 0 236 147 0 0 chr13 23533022 23533056 -78340113 - AluSx SINE Alu -265 34 1 243 0 0 0 chr13 23535319 23535346 -78337823 + (CA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr13 23536534 23536560 -78336609 + AT_rich Low_complexity Low_complexity 1 26 0 926 105 0 15 chr13 23538136 23538269 -78334900 + FLAM_C SINE Alu 1 131 -2 403 294 72 6 chr13 23538969 23539149 -78334020 + MIR SINE MIR 69 260 -2 550 197 126 27 chr13 23541141 23541324 -78331845 - MIR SINE MIR -19 243 43 1858 108 104 7 chr13 23541744 23542023 -78331146 - AluSq SINE Alu -7 306 1 2359 93 0 0 chr13 23542339 23542639 -78330530 - AluY SINE Alu -11 300 1 213 121 0 0 chr13 23544632 23544665 -78328504 + (TG)n Simple_repeat Simple_repeat 2 34 0 333 182 50 50 chr13 23549370 23549469 -78323700 - MER63D DNA MER1_type -650 411 313 1709 130 0 112 chr13 23550635 23550991 -78322178 - AluSx SINE Alu 0 312 1 539 218 26 32 chr13 23551432 23551588 -78321581 - MER63D DNA MER1_type -118 944 790 1428 198 72 20 chr13 23551590 23551938 -78321231 - MER87 LTR ERV1 -2 539 174 255 307 114 0 chr13 23551979 23552067 -78321102 - LTR8 LTR ERV1 -567 124 27 1089 180 52 16 chr13 23552101 23552466 -78320703 - MER63D DNA MER1_type -619 442 3 244 301 88 0 chr13 23552914 23553027 -78320142 + MIR SINE MIR 128 250 -12 346 252 143 25 chr13 23553027 23553146 -78320023 - MER94 DNA DNA -1 133 1 1370 154 128 70 chr13 23553328 23553673 -78319496 + MLT1A1 LTR MaLR 1 365 0 27 92 0 0 chr13 23554715 23554791 -78318378 + AT_rich Low_complexity Low_complexity 1 76 0 2267 123 0 0 chr13 23554953 23555262 -78317907 + AluSx SINE Alu 1 309 -3 382 291 44 44 chr13 23556523 23556705 -78316464 + MER5A DNA MER1_type 7 188 -1 426 239 0 77 chr13 23556739 23556869 -78316300 - L2 LINE L2 0 3272 3153 265 193 0 36 chr13 23557841 23557924 -78315245 + CT-rich Low_complexity Low_complexity 3 82 0 453 177 15 71 chr13 23557961 23558036 -78315133 - L1ME2 LINE L1 -33 7928 7850 2231 86 0 4 chr13 23558036 23558316 -78314853 - AluSp SINE Alu -6 307 29 453 177 15 71 chr13 23558316 23558372 -78314797 - L1ME2 LINE L1 -111 7850 7792 5586 120 76 120 chr13 23558372 23558720 -78314449 - Tigger3b DNA MER2_type -1797 1231 869 209 33 33 0 chr13 23558720 23558750 -78314419 + (TGAG)n Simple_repeat Simple_repeat 4 34 0 5586 120 76 120 chr13 23558750 23559689 -78313480 - Tigger3b DNA MER2_type -2159 869 1 453 177 15 71 chr13 23559689 23559836 -78313333 - L1ME2 LINE L1 -169 7792 5828 908 186 6 6 chr13 23560012 23560184 -78312985 - AluSx SINE Alu -29 281 110 924 96 80 0 chr13 23560216 23560341 -78312828 - AluSx SINE Alu -177 135 1 2710 159 53 121 chr13 23560344 23561171 -78311998 - L1ME2 LINE L1 -343 5821 5038 992 191 79 130 chr13 23561227 23561391 -78311778 - L1MC5 LINE L1 -271 7690 7519 2285 87 28 7 chr13 23561391 23561680 -78311489 - AluSg SINE Alu -14 296 2 992 191 79 130 chr13 23561680 23561904 -78311265 - L1MC5 LINE L1 -442 7519 7285 2363 109 3 0 chr13 23561904 23562216 -78310953 - AluSq SINE Alu 0 313 1 992 191 79 130 chr13 23562216 23562382 -78310787 - L1MC5 LINE L1 -676 7285 7164 2030 129 13 23 chr13 23562382 23562691 -78310478 - AluSx SINE Alu -6 306 1 992 191 79 130 chr13 23562691 23562727 -78310442 - L1MC5 LINE L1 -797 7164 7128 569 266 39 0 chr13 23563986 23564114 -78309055 - MER94 DNA DNA 0 134 2 909 205 45 67 chr13 23564161 23564429 -78308740 + L1MC4a LINE L1 7073 7334 -474 2304 100 0 0 chr13 23564429 23564720 -78308449 - AluSx SINE Alu -21 291 1 287 257 14 0 chr13 23564967 23565041 -78308128 + MIR SINE MIR 54 128 -134 1979 192 60 12 chr13 23565041 23565457 -78307712 + L1MD3 LINE L1 7502 7937 -58 1489 168 0 82 chr13 23565458 23565621 -78307548 - AluJo SINE Alu -17 295 120 2271 118 0 0 chr13 23565621 23565917 -78307252 - AluSx SINE Alu -16 296 1 678 73 0 31 chr13 23565924 23566040 -78307129 - L1PA5 LINE L1 0 6154 6055 1489 168 0 82 chr13 23566040 23566184 -78306985 - AluJo SINE Alu -198 114 6 1592 129 3 129 chr13 23567380 23567720 -78305449 + AluJb SINE Alu 16 312 0 2424 78 3 13 chr13 23568710 23569018 -78304151 - AluSg SINE Alu -5 305 1 304 324 171 0 chr13 23569144 23569320 -78303849 - MIR SINE MIR -55 207 2 312 171 14 0 chr13 23569465 23569535 -78303634 - L1MB8 LINE L1 0 6178 6108 2238 102 0 3 chr13 23569577 23569882 -78303287 - AluSx SINE Alu 0 304 1 41 0 0 0 chr13 23570187 23570228 -78302941 + AT_rich Low_complexity Low_complexity 1 41 0 338 164 0 0 chr13 23570387 23570448 -78302721 - AluSx SINE Alu 0 301 241 1539 100 5 0 chr13 23570448 23570648 -78302521 - AluSx SINE Alu -111 201 1 377 172 115 8 chr13 23570787 23570909 -78302260 - L1MC5 LINE L1 -218 7743 7609 414 216 0 90 chr13 23570922 23570995 -78302174 - L1MB8 LINE L1 -7 6171 6114 2259 96 3 0 chr13 23570995 23571286 -78301883 - AluSc SINE Alu -17 292 1 414 216 0 90 chr13 23571286 23571346 -78301823 - L1MB8 LINE L1 -64 6114 6050 * 2630 220 46 86 chr13 23571342 23571775 -78301394 - L1MC5 LINE L1 -369 7592 7143 2028 105 64 17 chr13 23571775 23572071 -78301098 - AluSg SINE Alu 0 310 1 2630 220 46 86 chr13 23572071 23572886 -78300283 - L1MC5 LINE L1 -818 7143 6377 183 42 0 0 chr13 23572908 23572932 -78300237 + (TTG)n Simple_repeat Simple_repeat 2 25 0 690 146 31 39 chr13 23572975 23573105 -78300064 - FLAM_A SINE Alu -4 129 1 547 205 26 19 chr13 23573188 23573344 -78299825 - L1MB8 LINE L1 0 6178 6022 2715 221 66 4 chr13 23573344 23573970 -78299199 - L1M4 LINE L1 -1234 4912 4235 270 0 0 0 chr13 23573970 23574000 -78299169 + (TG)n Simple_repeat Simple_repeat 2 31 0 2715 221 66 4 chr13 23574000 23574087 -78299082 - L1M4 LINE L1 -1911 4235 4155 287 193 0 18 chr13 23574130 23574187 -78298982 - L1M4 LINE L1 -1984 4162 4107 * 10566 158 51 22 chr13 23574174 23574399 -78298770 - L1MC3 LINE L1 -47 7738 7521 2461 81 3 0 chr13 23574399 23574707 -78298462 - AluSp SINE Alu -4 309 1 10566 158 51 22 chr13 23574707 23576226 -78296943 - L1MC3 LINE L1 -264 7521 5925 2152 124 3 13 chr13 23576226 23576540 -78296629 - AluSq SINE Alu -2 311 1 10566 158 51 22 chr13 23576540 23576808 -78296361 - L1MC3 LINE L1 -1860 5925 5666 546 223 13 19 chr13 23576811 23576968 -78296201 - AluSg/x SINE Alu -16 296 141 2378 108 0 9 chr13 23627937 23628252 -78244917 - AluSx SINE Alu 0 312 1 180 316 118 15 chr13 23628495 23628631 -78244538 + L2 LINE L2 2716 2865 -449 226 365 9 26 chr13 23629434 23629594 -78243575 - MIR SINE MIR -17 191 34 338 204 64 30 chr13 23630034 23630175 -78242994 + MLT1H LTR MaLR 250 549 0 1606 190 133 3 chr13 23631374 23631743 -78241426 + Charlie4a DNA MER1_type 5 421 -87 26 0 0 0 chr13 23632298 23632324 -78240845 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr13 23632957 23632981 -78240188 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1690 166 16 7 chr13 23633427 23633734 -78239435 + AluJb SINE Alu 1 310 -2 1623 143 136 10 chr13 23634265 23634566 -78238603 + MER44D DNA MER2_type 1 609 0 840 282 145 28 chr13 23636721 23636892 -78236277 - L2 LINE L2 -3 3310 3161 2009 98 36 0 chr13 23636892 23637166 -78236003 + AluSx SINE Alu 1 284 -28 441 0 0 0 chr13 23637166 23637215 -78235954 + (CATA)n Simple_repeat Simple_repeat 2 50 0 840 282 145 28 chr13 23637215 23637792 -78235377 - L2 LINE L2 -151 3162 2469 2241 83 38 0 chr13 23638801 23639091 -78234078 + AluSp SINE Alu 1 301 -12 1627 148 37 30 chr13 23639715 23640013 -78233156 - AluJb SINE Alu -12 300 1 2097 108 9 32 chr13 23640642 23640957 -78232212 + AluSq SINE Alu 1 308 -5 2233 102 3 0 chr13 23642437 23642732 -78230437 - AluSx SINE Alu -13 299 4 232 298 99 33 chr13 23644289 23644410 -78228759 + MIR SINE MIR 134 262 0 631 266 48 29 chr13 23645220 23645427 -78227742 + L3 LINE CR1 937 1147 -430 1604 141 59 59 chr13 23645457 23645763 -78227406 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr13 23645955 23645977 -78227192 + (A)n Simple_repeat Simple_repeat 1 22 0 423 62 62 0 chr13 23647232 23647297 -78225872 + MER41A LTR ERV1 400 468 -86 200 35 35 0 chr13 23647608 23647637 -78225532 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 805 139 9 0 chr13 23647639 23647754 -78225415 - FLAM_C SINE Alu -17 116 1 587 275 85 19 chr13 23648930 23649188 -78223981 + L1MC4 LINE L1 7501 7775 -267 1272 131 10 5 chr13 23649188 23649387 -78223782 + AluSq SINE Alu 1 200 -113 1829 160 4 0 chr13 23649577 23649858 -78223311 - AluSx SINE Alu -30 282 1 337 200 76 38 chr13 23650222 23650327 -78222842 + MER34 LTR ERV1 434 542 0 28 29 0 0 chr13 23651802 23651837 -78221332 + AT_rich Low_complexity Low_complexity 1 35 0 4435 86 2 9 chr13 23652061 23652619 -78220550 - MER41A LTR ERV1 0 554 1 2068 118 0 60 chr13 23652895 23653226 -78219943 - AluSx SINE Alu -1 311 1 712 205 0 0 chr13 23653249 23653376 -78219793 - FLAM_A SINE Alu 0 142 16 229 153 31 20 chr13 23653791 23653889 -78219280 + (CATATA)n Simple_repeat Simple_repeat 4 102 0 605 109 43 0 chr13 23654441 23654533 -78218636 - AluSg/x SINE Alu -9 303 208 1100 108 13 0 chr13 23654533 23654691 -78218478 - AluSq SINE Alu -153 160 1 2188 113 3 3 chr13 23655120 23655421 -78217748 - AluSg SINE Alu -9 301 1 2065 113 0 78 chr13 23656345 23656680 -78216489 + AluSg1 SINE Alu 1 309 0 2102 111 3 44 chr13 23657203 23657519 -78215650 + AluSx SINE Alu 1 303 -9 1662 163 37 23 chr13 23657784 23658084 -78215085 - AluSx SINE Alu -6 306 3 1824 81 0 13 chr13 23658983 23659219 -78213950 - AluY SINE Alu -15 296 64 1880 146 0 50 chr13 23659460 23659783 -78213386 - AluSx SINE Alu -5 307 1 303 296 95 37 chr13 23660493 23660682 -78212487 - L2 LINE L2 -837 2477 2278 2477 72 0 10 chr13 23660877 23661183 -78211986 + AluY SINE Alu 1 303 -8 2340 90 30 0 chr13 23661193 23661494 -78211675 + AluSg SINE Alu 1 310 0 866 179 0 19 chr13 23662936 23663139 -78210030 + AluSg/x SINE Alu 127 326 0 1875 127 3 68 chr13 23663424 23663746 -78209423 - AluSx SINE Alu -11 301 1 2259 112 3 0 chr13 23664041 23664346 -78208823 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr13 23665352 23665381 -78207788 + AT_rich Low_complexity Low_complexity 1 29 0 2226 72 0 0 chr13 23666142 23666421 -78206748 + AluSc SINE Alu 1 279 -30 386 222 48 56 chr13 23666659 23666785 -78206384 - L1 LINE L1 -1153 4993 4867 2224 136 107 3 chr13 23666785 23667167 -78206002 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 23667167 23667530 -78205639 + THE1B LTR MaLR 1 364 0 519 281 45 30 chr13 23667533 23667800 -78205369 - L1 LINE L1 -1270 4876 4606 2325 90 3 0 chr13 23667805 23668105 -78205064 + AluSq SINE Alu 5 305 -8 324 305 0 0 chr13 23668115 23668210 -78204959 + L1MC4 LINE L1 7770 7864 -178 351 248 64 8 chr13 23668287 23668434 -78204735 + L1MC4 LINE L1 5936 8042 0 536 240 55 7 chr13 23668461 23668607 -78204562 + L1MA10 LINE L1 6175 6327 -7 306 0 0 0 chr13 23668607 23668641 -78204528 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 158 42 0 chr13 23668877 23668925 -78204244 + MIR SINE MIR 97 148 -62 2484 64 3 0 chr13 23669395 23669692 -78203477 - AluSp SINE Alu -15 298 1 1583 144 31 0 chr13 23669750 23669979 -78203190 - MER46A DNA MER2_type 0 236 1 2000 124 13 3 chr13 23670623 23670921 -78202248 + AluSx SINE Alu 1 301 -11 1172 183 8 12 chr13 23671516 23671757 -78201412 + L1MC/D LINE L1 4948 5187 -959 2224 150 136 20 chr13 23671758 23672206 -78200963 + L1MB3 LINE L1 5684 6183 0 2323 104 0 0 chr13 23672240 23672547 -78200622 + AluY SINE Alu 1 307 -4 2622 183 44 18 chr13 23672547 23673044 -78200125 - MST-int LTR MaLR -49 1686 1089 842 196 20 110 chr13 23673035 23673204 -78199965 - L1MC4a LINE L1 -857 6951 6768 * 234 0 0 0 chr13 23673204 23673230 -78199939 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2059 124 0 0 chr13 23673233 23673506 -78199663 - AluSg SINE Alu -30 280 8 842 196 20 110 chr13 23673506 23673577 -78199592 - L1MC4a LINE L1 -1042 6766 6729 1384 121 0 73 chr13 23673578 23673810 -78199359 - AluSg/x SINE Alu -13 299 85 989 99 0 112 chr13 23673810 23673971 -78199198 - AluSq SINE Alu -63 250 108 953 138 0 0 chr13 23674071 23674201 -78198968 - AluSq SINE Alu -182 130 1 2191 133 3 0 chr13 23674212 23674520 -78198649 - AluSx SINE Alu -3 309 1 279 178 0 0 chr13 23674535 23674580 -78198589 - L1MC4a LINE L1 -1086 6722 6678 232 282 219 60 chr13 23674893 23674927 -78198242 + L1MC/D LINE L1 5385 5412 -2396 2247 108 0 0 chr13 23674927 23675251 -78197918 + AluY SINE Alu 1 311 0 232 282 219 60 chr13 23675251 23675331 -78197838 + L1MC/D LINE L1 5412 5478 -2330 2166 132 0 3 chr13 23675331 23675635 -78197534 + AluSx SINE Alu 1 303 -9 232 282 219 60 chr13 23675635 23675783 -78197386 + L1MC/D LINE L1 5478 5601 -2207 246 81 0 0 chr13 23675783 23675820 -78197349 + (TG)n Simple_repeat Simple_repeat 1 37 0 232 282 219 60 chr13 23675820 23675888 -78197281 + L1MC/D LINE L1 5601 5770 -2038 237 281 53 111 chr13 23675919 23676090 -78197079 - L2 LINE L2 -252 3061 2901 184 255 21 0 chr13 23676238 23676285 -78196884 + L2 LINE L2 3265 3312 -1 2652 154 28 9 chr13 23676360 23676820 -78196349 + Charlie4a DNA MER1_type 37 505 -3 1534 252 44 9 chr13 23677024 23677457 -78195712 + L1ME1 LINE L1 5476 5923 -243 8040 33 0 0 chr13 23677462 23678485 -78194684 - L1PA3 LINE L1 0 6155 5133 7869 40 0 1 chr13 23678485 23679428 -78193741 + L1PA3 LINE L1 4220 5161 -985 374 230 82 59 chr13 23679557 23679692 -78193477 + L1MA10 LINE L1 6192 6329 -5 429 56 0 0 chr13 23680101 23680155 -78193014 + Alu SINE Alu 245 298 -13 1960 99 64 7 chr13 23680364 23680647 -78192522 - AluSp SINE Alu -14 299 1 211 200 83 17 chr13 23682503 23682563 -78190606 + MIR SINE MIR 91 154 -108 2367 119 0 0 chr13 23683077 23683389 -78189780 - AluSx SINE Alu 0 312 1 1469 186 42 11 chr13 23683527 23683812 -78189357 - AluJb SINE Alu -18 294 1 486 259 129 40 chr13 23684258 23684439 -78188730 - MIR SINE MIR -6 256 49 2045 140 0 3 chr13 23684439 23684746 -78188423 - AluSx SINE Alu 0 306 1 486 259 129 40 chr13 23684746 23684787 -78188382 - MIR SINE MIR -213 49 13 26 50 0 0 chr13 23685001 23685041 -78188128 + AT_rich Low_complexity Low_complexity 1 40 0 2017 134 3 3 chr13 23685365 23685696 -78187473 + AluSq SINE Alu 1 313 0 21 0 0 0 chr13 23687590 23687611 -78185558 + AT_rich Low_complexity Low_complexity 1 21 0 705 275 29 59 chr13 23687617 23687745 -78185424 - L1MC/D LINE L1 -1992 5816 5686 2040 44 48 0 chr13 23687745 23687995 -78185174 + AluY SINE Alu 41 302 -9 705 275 29 59 chr13 23687995 23688139 -78185030 - L1MC/D LINE L1 -2122 5686 5552 269 390 70 6 chr13 23688159 23688331 -78184838 - MIR3 SINE MIR -6 202 20 268 206 41 14 chr13 23688343 23688416 -78184753 - L1ME4a LINE L1 -75 6046 5972 1974 133 11 0 chr13 23688492 23688778 -78184391 + AluSx SINE Alu 1 289 -23 195 69 0 0 chr13 23688783 23688812 -78184357 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 192 97 0 0 chr13 23688881 23688912 -78184257 + (T)n Simple_repeat Simple_repeat 1 31 0 211 211 0 70 chr13 23689671 23689728 -78183441 - L2 LINE L2 -2 3270 3218 375 272 9 0 chr13 23690228 23690342 -78182827 + L1ME4a LINE L1 5716 5830 -291 1822 140 0 26 chr13 23690342 23690614 -78182555 + AluSx SINE Alu 1 265 -47 355 307 8 0 chr13 23691879 23692006 -78181163 - MIR SINE MIR -48 214 87 607 173 136 0 chr13 23692862 23692972 -78180197 + FLAM_A SINE Alu 3 127 -6 1724 120 90 0 chr13 23692982 23693248 -78179921 + AluSx SINE Alu 1 290 -22 2057 114 10 16 chr13 23694663 23694970 -78178199 + AluSx SINE Alu 7 311 -1 326 256 64 56 chr13 23694989 23695114 -78178055 + MIR SINE MIR 66 191 -71 712 169 0 59 chr13 23695117 23695246 -78177923 + AluJo/FLAM SINE Alu 2 124 -188 1942 112 98 4 chr13 23695246 23695523 -78177646 - AluSq SINE Alu -10 303 1 460 174 98 45 chr13 23695646 23695778 -78177391 - MIR SINE MIR -27 235 97 2272 79 0 4 chr13 23695890 23696170 -78176999 + AluY SINE Alu 1 279 -32 473 308 92 4 chr13 23696333 23696573 -78176596 - MIR SINE MIR 0 262 2 2259 93 0 17 chr13 23697640 23697940 -78175229 + AluSq SINE Alu 1 295 -18 838 88 0 0 chr13 23698173 23698275 -78174894 - AluS SINE Alu -211 102 1 2025 124 7 7 chr13 23698276 23698558 -78174611 - AluSq SINE Alu -31 282 1 313 75 57 19 chr13 23698558 23698611 -78174558 + MSTB-int LTR MaLR 1526 1580 0 2286 120 85 22 chr13 23698611 23698943 -78174226 + MSTB LTR MaLR 1 364 -62 2519 85 0 0 chr13 23698943 23699248 -78173921 - AluSx SINE Alu -7 305 1 2286 120 85 22 chr13 23699248 23699316 -78173853 + MSTB LTR MaLR 364 426 0 2615 198 118 31 chr13 23699318 23700002 -78173167 + L1MC4a LINE L1 6944 7708 -100 2064 107 38 0 chr13 23700002 23700291 -78172878 - AluSx SINE Alu -12 300 1 2615 198 118 31 chr13 23700291 23700401 -78172768 + L1MC4a LINE L1 7708 7807 -1 638 102 102 8 chr13 23700420 23700538 -78172631 + L1MA9 LINE L1 6162 6290 -22 27 62 0 0 chr13 23700538 23700586 -78172583 + AT_rich Low_complexity Low_complexity 1 48 0 14908 86 8 2 chr13 23700773 23703577 -78169592 - L1PA7 LINE L1 -1 6153 3332 33378 79 7 10 chr13 23703677 23709084 -78164085 + L1PA5 LINE L1 767 6154 0 2173 121 10 3 chr13 23709843 23710149 -78163020 - AluSg SINE Alu -2 308 1 2300 100 3 3 chr13 23710155 23710466 -78162703 - AluSx SINE Alu 0 312 2 2160 118 10 20 chr13 23710510 23710816 -78162353 - AluSq SINE Alu -10 303 1 986 127 0 0 chr13 23710845 23710979 -78162190 - AluSq/x SINE Alu -178 134 1 234 0 0 0 chr13 23711177 23711203 -78161966 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1182 137 6 0 chr13 23711203 23711379 -78161790 - AluJb SINE Alu -4 308 129 396 0 0 0 chr13 23711403 23711447 -78161722 + (CTTG)n Simple_repeat Simple_repeat 2 45 0 2192 114 0 0 chr13 23711466 23711774 -78161395 - AluSg SINE Alu 0 310 1 1611 92 0 32 chr13 23711798 23711878 -78161291 - AluSc SINE Alu -98 211 130 2297 72 3 62 chr13 23711878 23712199 -78160970 - AluY SINE Alu -7 304 3 1611 92 0 32 chr13 23712199 23712335 -78160834 - AluSc SINE Alu -179 130 2 36 23 0 0 chr13 23712720 23712763 -78160406 + AT_rich Low_complexity Low_complexity 1 43 0 1145 88 0 0 chr13 23712780 23712916 -78160253 - AluSq/x SINE Alu -172 141 6 2244 113 0 3 chr13 23713389 23713690 -78159479 - AluSq SINE Alu -13 300 1 373 267 166 0 chr13 23714058 23714233 -78158936 - MIR SINE MIR 0 262 55 848 160 0 0 chr13 23714307 23714432 -78158737 + FLAM_C SINE Alu 1 125 -18 2901 10 0 0 chr13 23714635 23714944 -78158225 - AluYa5 SINE Alu -2 309 1 881 206 0 0 chr13 23714946 23715106 -78158063 - FRAM SINE Alu -16 160 1 195 276 35 0 chr13 23715650 23715708 -78157461 - L2 LINE L2 -9 3263 3204 2354 122 0 0 chr13 23715933 23716245 -78156924 - AluSx SINE Alu 0 312 1 835 167 17 69 chr13 23716555 23716729 -78156440 + AluJb SINE Alu 137 301 -11 2257 92 31 0 chr13 23717120 23717412 -78155757 - AluSx SINE Alu -11 301 1 4002 185 8 19 chr13 23717468 23718269 -78154900 + L1 LINE L1 4243 5034 -1112 1756 169 10 24 chr13 23718280 23718576 -78154593 + AluJb SINE Alu 1 292 -20 207 162 0 0 chr13 23718576 23718613 -78154556 + G-rich Low_complexity Low_complexity 1 37 0 1329 173 38 21 chr13 23718684 23718921 -78154248 + AluJo SINE Alu 3 243 -69 1779 82 5 0 chr13 23718923 23719142 -78154027 + AluSp SINE Alu 76 295 -18 4976 142 93 38 chr13 23719143 23719236 -78153933 + L1PA16 LINE L1 5183 5269 -897 2180 127 0 0 chr13 23719236 23719527 -78153642 + AluSg SINE Alu 3 293 -17 4976 142 93 38 chr13 23719527 23719877 -78153292 + L1PA16 LINE L1 5269 5598 -568 2330 107 3 3 chr13 23719877 23720185 -78152984 + AluSp SINE Alu 1 308 -5 4976 142 93 38 chr13 23720185 23720349 -78152820 + L1PA16 LINE L1 5598 5751 -415 2168 122 7 0 chr13 23720349 23720643 -78152526 + AluSp SINE Alu 1 296 -17 4976 142 93 38 chr13 23720643 23720967 -78152202 + L1PA16 LINE L1 5751 6157 -9 228 207 216 36 chr13 23721161 23721272 -78151897 - MIR SINE MIR -14 248 118 2147 127 0 3 chr13 23721273 23721572 -78151597 - AluSx SINE Alu -14 298 1 1744 132 69 31 chr13 23722024 23722313 -78150856 + AluJo SINE Alu 1 300 -12 246 32 0 0 chr13 23722359 23722390 -78150779 + (CA)n Simple_repeat Simple_repeat 2 32 0 2521 14 41 7 chr13 23722752 23723042 -78150127 + AluY SINE Alu 1 300 -11 2303 92 7 0 chr13 23723091 23723385 -78149784 + AluSx SINE Alu 1 296 -16 697 207 0 7 chr13 23723399 23723539 -78149630 - AluJb SINE Alu -2 310 172 3763 163 49 57 chr13 23724286 23725128 -78148041 - L1MB8 LINE L1 0 6178 5331 1790 125 121 7 chr13 23725128 23725409 -78147760 - AluSp SINE Alu 0 313 1 1649 146 0 0 chr13 23725410 23725657 -78147512 - AluSx SINE Alu -8 304 58 3763 163 49 57 chr13 23725657 23725779 -78147390 - L1MB8 LINE L1 -846 5332 5207 1634 156 7 7 chr13 23725781 23726064 -78147105 - AluY SINE Alu -12 299 17 386 273 47 16 chr13 23726244 23726372 -78146797 + MLT1J2 LTR MaLR 262 393 -57 13010 21 0 0 chr13 23726378 23728632 -78144537 - L1PA2 LINE L1 0 6155 3902 469 185 267 56 chr13 23729202 23729364 -78143805 + MIR SINE MIR 2 215 -47 2302 79 0 24 chr13 23729364 23729705 -78143464 + AluSx SINE Alu 1 334 0 469 185 267 56 chr13 23729705 23729734 -78143435 + MIR SINE MIR 215 237 -25 1886 172 33 44 chr13 23729934 23730323 -78142846 - MLT1B LTR MaLR -5 385 1 21 0 0 0 chr13 23730506 23730527 -78142642 + AT_rich Low_complexity Low_complexity 1 21 0 821 188 0 7 chr13 23730739 23730877 -78142292 + AluJo SINE Alu 3 139 -173 2277 111 3 0 chr13 23730881 23731188 -78141981 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr13 23731189 23731216 -78141953 + AT_rich Low_complexity Low_complexity 1 27 0 802 174 0 0 chr13 23731216 23731348 -78141821 + AluSq/x SINE Alu 1 132 -181 2190 89 10 29 chr13 23731350 23731663 -78141506 + AluSx SINE Alu 1 307 -5 2213 108 0 40 chr13 23731665 23731801 -78141368 + AluSq SINE Alu 1 141 -172 2578 41 0 7 chr13 23731801 23732095 -78141074 + AluY SINE Alu 1 292 -19 2213 108 0 40 chr13 23732095 23732282 -78140887 + AluSq SINE Alu 141 311 -2 2154 112 0 3 chr13 23732804 23733099 -78140070 + AluSq SINE Alu 1 294 -19 977 118 0 15 chr13 23733287 23733422 -78139747 - FLAM_C SINE Alu 0 133 1 2012 154 0 3 chr13 23733843 23734148 -78139021 + AluJo SINE Alu 1 304 -8 194 183 83 17 chr13 23734465 23734525 -78138644 - MIR SINE MIR -43 219 156 14347 134 75 113 chr13 23735132 23736336 -78136833 - L1P LINE L1 -2894 3252 2003 2356 87 0 19 chr13 23736336 23736648 -78136521 + AluSg SINE Alu 5 310 0 14347 134 75 113 chr13 23736648 23738826 -78134343 - L1P LINE L1 -4143 2003 1 486 277 77 23 chr13 23738917 23739105 -78134064 + MIR3 SINE MIR 2 208 0 2392 102 0 6 chr13 23739278 23739591 -78133578 - AluSx SINE Alu -1 311 1 1915 160 3 0 chr13 23740696 23740990 -78132179 - AluJo SINE Alu -17 295 1 2602 122 45 47 chr13 23740997 23741345 -78131824 - L1MB4 LINE L1 0 6180 5832 2157 131 3 3 chr13 23741345 23741651 -78131518 - AluSg SINE Alu -4 306 1 2602 122 45 47 chr13 23741651 23741770 -78131399 - L1MB4 LINE L1 -348 5832 5714 1855 107 0 93 chr13 23742164 23742503 -78130666 + AluSx SINE Alu 1 310 0 1979 121 3 3 chr13 23742575 23742904 -78130265 + AluSx SINE Alu 1 329 0 1166 164 50 142 chr13 23743115 23743517 -78129652 + MLT1A1 LTR MaLR 1 365 0 243 347 10 80 chr13 23743617 23743816 -78129353 - L2 LINE L2 -1 3271 3087 270 268 42 0 chr13 23743877 23743948 -78129221 + L2 LINE L2 3199 3272 0 222 243 264 43 chr13 23744523 23744663 -78128506 - MIR SINE MIR -61 201 31 216 0 0 0 chr13 23744722 23744746 -78128423 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1436 134 21 134 chr13 23744749 23745085 -78128084 - AluSc SINE Alu -1 298 1 844 225 70 65 chr13 23745216 23745450 -78127719 - L1MEc LINE L1 -864 5351 5113 2292 109 0 10 chr13 23745450 23745752 -78127417 - AluSx SINE Alu -13 299 1 844 225 70 65 chr13 23745752 23745931 -78127238 - L1MEc LINE L1 -1102 5113 4936 2224 136 107 3 chr13 23745931 23746313 -78126856 - MSTC LTR MaLR 0 428 7 2845 102 6 3 chr13 23746313 23746676 -78126493 + THE1B LTR MaLR 1 364 0 716 272 39 58 chr13 23746679 23746947 -78126222 - L1MEc LINE L1 -1270 4945 4684 2148 116 7 0 chr13 23746947 23747240 -78125929 + AluSq SINE Alu 2 296 -17 716 272 39 58 chr13 23747240 23747335 -78125834 - L1MEc LINE L1 -1531 4684 4589 1879 154 7 3 chr13 23747370 23747656 -78125513 - AluSx SINE Alu -25 287 1 323 190 0 25 chr13 23747732 23747811 -78125358 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 2226 91 3 3 chr13 23747811 23748098 -78125071 - AluSc SINE Alu -22 287 1 380 179 77 17 chr13 23748101 23748218 -78124951 - L1MEc LINE L1 -1701 4514 4391 1440 233 106 58 chr13 23748320 23748818 -78124351 - MLT1E LTR MaLR -2 591 70 740 289 260 17 chr13 23748869 23749526 -78123643 - L1MEc LINE L1 -1988 4227 3411 796 224 21 0 chr13 23749599 23749742 -78123427 - FRAM SINE Alu -30 146 1 1387 150 109 19 chr13 23750056 23750323 -78122846 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr13 23750347 23750368 -78122801 + AT_rich Low_complexity Low_complexity 1 21 0 2355 102 0 3 chr13 23750419 23750724 -78122445 - AluSx SINE Alu -8 304 1 620 271 201 24 chr13 23750731 23751233 -78121936 - L1MEc LINE L1 -3241 2974 2384 1962 125 11 0 chr13 23751311 23751628 -78121541 + AluSq SINE Alu 1 320 0 289 73 0 0 chr13 23751798 23751839 -78121330 - LTR60 LTR ERV1 0 586 546 240 250 161 27 chr13 23751898 23752010 -78121159 - L1MEc LINE L1 -4653 1743 1617 319 200 15 0 chr13 23752077 23752142 -78121027 - L1MEc LINE L1 -3435 2780 2715 1931 159 0 3 chr13 23752157 23752459 -78120710 - AluSx SINE Alu -11 301 1 365 263 5 54 chr13 23752585 23752771 -78120398 + C-rich Low_complexity Low_complexity 2 178 0 2318 41 44 7 chr13 23753568 23753862 -78119307 + AluY SINE Alu 1 305 -6 2163 93 0 23 chr13 23753869 23754179 -78118990 + AluSg SINE Alu 1 303 -7 386 238 87 0 chr13 23754479 23754605 -78118564 - L1MEc LINE L1 -5282 923 787 2104 132 3 7 chr13 23754734 23755038 -78118131 + AluSx SINE Alu 1 303 -9 1685 192 7 0 chr13 23755038 23755329 -78117840 - AluJo SINE Alu -19 293 1 201 268 0 0 chr13 23755515 23755571 -78117598 + (TA)n Simple_repeat Simple_repeat 2 57 0 471 290 50 73 chr13 23756213 23756265 -78116904 + MIR SINE MIR 3 55 -207 2319 97 0 3 chr13 23756265 23756564 -78116605 - AluSx SINE Alu -14 298 1 471 290 50 73 chr13 23756564 23756770 -78116399 + MIR SINE MIR 55 255 -7 1880 146 4 11 chr13 23756775 23757055 -78116114 + AluSx SINE Alu 1 278 -34 2298 95 3 0 chr13 23757100 23757394 -78115775 - AluSq SINE Alu -18 295 1 687 226 120 20 chr13 23757420 23757514 -78115655 + L1MDa LINE L1 2348 2431 -4253 2109 120 31 0 chr13 23757514 23757805 -78115364 + AluJb SINE Alu 1 300 -12 687 226 120 20 chr13 23757805 23757824 -78115345 + L1MDa LINE L1 2431 2447 -4237 2214 106 3 37 chr13 23757824 23758145 -78115024 + AluSg SINE Alu 1 310 0 687 226 120 20 chr13 23758145 23758399 -78114770 + L1MDa LINE L1 2447 2792 -3892 183 42 0 0 chr13 23758453 23758477 -78114692 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 528 346 49 11 chr13 23758646 23758912 -78114257 + HAL1 LINE L1 618 893 -1614 421 337 34 17 chr13 23758913 23758987 -78114182 + MLT1J LTR MaLR 3 74 -335 1782 154 10 29 chr13 23758987 23759293 -78113876 + AluJo SINE Alu 1 300 -12 421 337 34 17 chr13 23759293 23759427 -78113742 + MLT1J LTR MaLR 74 174 -235 326 116 0 0 chr13 23759437 23759480 -78113689 + Alu SINE Alu 1 43 -258 2522 81 3 0 chr13 23759530 23759839 -78113330 - AluSq SINE Alu -3 310 1 522 239 64 32 chr13 23759840 23760179 -78112990 + HAL1 LINE L1 1055 1496 -1011 1480 173 48 17 chr13 23760222 23760517 -78112652 + AluJb SINE Alu 1 304 -8 870 175 0 0 chr13 23760518 23760655 -78112514 + AluSg/x SINE Alu 137 273 -39 435 275 222 44 chr13 23760655 23761110 -78112059 + HAL1 LINE L1 1531 2066 -441 1788 145 25 7 chr13 23761154 23761437 -78111732 + AluJo SINE Alu 1 288 -24 43593 33 23 2 chr13 23761455 23767481 -78105688 + L1PA2 LINE L1 1 6151 -4 311 218 0 13 chr13 23767541 23767619 -78105550 + HAL1 LINE L1 2129 2205 -302 248 245 177 27 chr13 23767644 23767791 -78105378 + HAL1 LINE L1 2309 2477 -30 545 290 119 10 chr13 23767844 23768228 -78104941 + L1MC4a LINE L1 5188 5614 -628 439 245 54 44 chr13 23768289 23768424 -78104745 + L1MC4a LINE L1 5750 5882 -239 414 0 0 0 chr13 23768424 23768470 -78104699 + (CA)n Simple_repeat Simple_repeat 2 47 0 439 245 54 44 chr13 23768470 23768595 -78104574 + L1MC4a LINE L1 5882 6016 -105 29 28 0 0 chr13 23768669 23768705 -78104464 + AT_rich Low_complexity Low_complexity 1 36 0 6472 121 4 0 chr13 23769376 23769565 -78103604 + L1PA15 LINE L1 4928 5115 -1050 2123 117 0 13 chr13 23769565 23769865 -78103304 + AluSq SINE Alu 1 296 -17 6472 121 4 0 chr13 23769865 23770907 -78102262 + L1PA15 LINE L1 5115 6165 0 335 184 195 0 chr13 23771000 23771087 -78102082 - L1M LINE L1 -2614 5428 5325 1818 100 3 147 chr13 23771088 23771449 -78101720 - AluSx SINE Alu -3 309 1 2145 137 0 0 chr13 23771451 23771757 -78101412 - AluSx SINE Alu -6 306 1 2166 103 3 0 chr13 23771766 23772087 -78101082 - AluSq SINE Alu 0 322 1 595 246 15 20 chr13 23772087 23772282 -78100887 - L1M4 LINE L1 -864 5282 5089 482 225 8 62 chr13 23773402 23773531 -78099638 - MIR SINE MIR -54 208 87 1201 138 0 6 chr13 23773602 23773783 -78099386 - AluSg/x SINE Alu 0 310 131 285 242 110 11 chr13 23773899 23773990 -78099179 - MIR SINE MIR -64 144 45 1834 99 134 0 chr13 23774130 23774392 -78098777 + AluSx SINE Alu 1 297 -5 2256 108 13 0 chr13 23774683 23774988 -78098181 - AluSq SINE Alu -4 309 1 279 250 125 11 chr13 23776254 23776342 -78096827 - MIR SINE MIR -16 246 149 2400 232 26 42 chr13 23776440 23777081 -78096088 + L1ME1 LINE L1 5531 6161 -5 332 43 22 0 chr13 23777277 23777323 -78095846 + (TA)n Simple_repeat Simple_repeat 2 48 0 353 322 41 7 chr13 23777325 23777471 -78095698 - L1ME LINE L1 -356 5765 5615 321 266 159 18 chr13 23777859 23777972 -78095197 - MIR SINE MIR -10 252 124 188 293 67 40 chr13 23777972 23778047 -78095122 - MIR3 SINE MIR -129 79 3 294 298 0 12 chr13 23778151 23778235 -78094934 - L2 LINE L2 0 3313 3231 2290 106 13 0 chr13 23778556 23778858 -78094311 - AluSq SINE Alu -7 306 1 1180 239 19 0 chr13 23779271 23779531 -78093638 - AluJo SINE Alu -9 303 39 1974 158 87 14 chr13 23780049 23780417 -78092752 + LTR57 LTR ERVL 17 411 0 2195 119 0 16 chr13 23781281 23781592 -78091577 + AluSq SINE Alu 1 306 -7 217 243 0 0 chr13 23781925 23781962 -78091207 - L2 LINE L2 -12 3260 3224 * 424 289 98 5 chr13 23781930 23782124 -78091045 - MIR SINE MIR -11 251 40 34 55 0 0 chr13 23782306 23782361 -78090808 + AT_rich Low_complexity Low_complexity 1 55 0 1628 115 0 0 chr13 23783975 23784201 -78088968 - AluY SINE Alu -8 303 78 2083 44 4 4 chr13 23784301 23784549 -78088620 + AluY SINE Alu 52 299 -12 1132 192 5 0 chr13 23784549 23784747 -78088422 - AluJo SINE Alu -113 199 1 2286 100 3 25 chr13 23785544 23785863 -78087306 + AluSx SINE Alu 1 312 0 560 173 209 0 chr13 23786217 23786356 -78086813 + L1ME2 LINE L1 5726 5893 -273 1227 131 11 11 chr13 23786362 23786545 -78086624 + AluSg/x SINE Alu 120 302 -8 592 260 130 18 chr13 23786545 23786768 -78086401 + L1ME2 LINE L1 5907 6154 -10 310 305 39 8 chr13 23786795 23786923 -78086246 + L1MC5 LINE L1 7782 7913 -48 672 216 0 8 chr13 23787021 23787155 -78086014 - FLAM_A SINE Alu 0 133 1 1663 155 34 7 chr13 23787381 23787678 -78085491 + AluJo SINE Alu 1 305 -7 446 205 39 71 chr13 23788186 23788313 -78084856 + L1ME LINE L1 5547 5669 -452 207 100 0 0 chr13 23788313 23788343 -78084826 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1708 162 47 14 chr13 23788348 23788644 -78084525 + AluJb SINE Alu 1 306 -6 587 275 74 89 chr13 23788666 23788860 -78084309 + L2 LINE L2 2915 3110 -203 1674 143 0 8 chr13 23788860 23789104 -78084065 - AluJo SINE Alu -50 262 21 587 275 74 89 chr13 23789104 23789171 -78083998 + L2 LINE L2 3110 3176 -137 531 0 0 0 chr13 23789171 23789230 -78083939 + (TG)n Simple_repeat Simple_repeat 2 60 0 587 275 74 89 chr13 23789230 23789371 -78083798 + L2 LINE L2 3176 3312 -1 1078 288 76 3 chr13 23789997 23790341 -78082828 + MLT1G1 LTR MaLR 5 373 -222 367 237 40 0 chr13 23790469 23790545 -78082624 + MER2 DNA MER2_type 267 345 0 573 252 15 0 chr13 23790551 23790686 -78082483 + MER119 DNA MER1_type 170 306 -277 * 1168 202 185 34 chr13 23790676 23791033 -78082136 + MLT1G3 LTR MaLR 110 520 -10 2159 118 0 7 chr13 23792400 23792704 -78080465 - AluSx SINE Alu -10 302 1 1680 93 5 0 chr13 23793272 23793486 -78079683 - AluSp SINE Alu -18 295 81 229 228 193 0 chr13 23793610 23793667 -78079502 - MIR SINE MIR -116 146 79 294 322 0 0 chr13 23794446 23794536 -78078633 - L2 LINE L2 -32 3281 3192 1436 114 199 4 chr13 23794650 23794896 -78078273 - AluJb SINE Alu -8 294 1 510 206 56 32 chr13 23794916 23795042 -78078127 - MER5A DNA MER1_type -44 145 17 2079 116 4 0 chr13 23795306 23795583 -78077586 + AluSg SINE Alu 1 278 -32 432 0 0 0 chr13 23795584 23795632 -78077537 + (TA)n Simple_repeat Simple_repeat 2 49 0 183 286 43 0 chr13 23797007 23797077 -78076092 + MIR SINE MIR 46 118 -90 2212 82 0 58 chr13 23797707 23797852 -78075317 + AluSx SINE Alu 1 153 -159 237 33 0 0 chr13 23797852 23797882 -78075287 + (CA)n Simple_repeat Simple_repeat 2 31 0 2212 82 0 58 chr13 23797882 23798064 -78075105 + AluSx SINE Alu 153 309 -3 2135 114 3 0 chr13 23798076 23798365 -78074804 + AluSx SINE Alu 5 294 -18 1351 145 200 14 chr13 23798762 23799154 -78074015 - LTR54B LTR ERV1 0 510 8 2025 143 3 0 chr13 23799209 23799502 -78073667 - AluSx SINE Alu -18 294 1 275 268 37 12 chr13 23799504 23799586 -78073583 - L1ME3A LINE L1 -53 6117 6034 1085 157 24 43 chr13 23800100 23800310 -78072859 + AluJb SINE Alu 107 312 0 605 231 164 29 chr13 23800699 23800937 -78072232 - MLT1H1 LTR MaLR 0 555 286 1578 178 4 15 chr13 23802294 23802563 -78070606 + AluJb SINE Alu 32 297 -15 275 289 70 18 chr13 23803995 23804109 -78069060 - L2 LINE L2 -1 3271 3152 567 225 0 26 chr13 23804123 23804274 -78068895 + L2 LINE L2 3166 3312 -1 453 158 0 12 chr13 23804301 23804383 -78068786 + FLAM_A SINE Alu 44 124 -18 510 249 97 55 chr13 23804530 23804641 -78068528 - MIR SINE MIR 0 262 157 2252 104 0 16 chr13 23804641 23804948 -78068221 - AluSx SINE Alu -10 302 1 510 249 97 55 chr13 23804948 23805073 -78068096 - MIR SINE MIR -105 157 16 1773 146 0 76 chr13 23805612 23805928 -78067241 + AluJo SINE Alu 1 292 -20 21 0 0 0 chr13 23805928 23805949 -78067220 + AT_rich Low_complexity Low_complexity 1 21 0 236 30 30 0 chr13 23806412 23806445 -78066724 + (GA)n Simple_repeat Simple_repeat 1 34 0 1785 155 26 4 chr13 23806617 23806888 -78066281 + AluJo SINE Alu 3 279 -33 265 222 120 26 chr13 23806994 23807111 -78066058 + L2 LINE L2 2841 2968 -304 625 295 83 58 chr13 23807123 23807662 -78065507 + LTR67 LTR ERVL 2 554 -3 785 232 97 56 chr13 23808240 23808341 -78064828 + MLT1L LTR MaLR 41 136 -479 1296 228 66 9 chr13 23808341 23808661 -78064508 + MER58B DNA MER1_type 1 338 -3 785 232 97 56 chr13 23808661 23808899 -78064270 + MLT1L LTR MaLR 136 394 -221 297 207 17 17 chr13 23808930 23808988 -78064181 + MLT1L LTR MaLR 467 524 -91 1853 149 14 3 chr13 23809012 23809307 -78063862 + AluJo SINE Alu 1 298 -14 21 36 0 0 chr13 23809514 23809542 -78063627 + AT_rich Low_complexity Low_complexity 1 28 0 232 258 32 0 chr13 23809571 23809633 -78063536 + CT-rich Low_complexity Low_complexity 6 69 0 23 0 0 0 chr13 23809767 23809790 -78063379 + AT_rich Low_complexity Low_complexity 1 23 0 1876 142 38 0 chr13 23809796 23810112 -78063057 + L1MA5 LINE L1 5973 6300 0 2050 94 0 18 chr13 23810242 23810518 -78062651 - AluSx SINE Alu -2 310 40 2325 102 0 0 chr13 23810987 23811282 -78061887 - AluSx SINE Alu -17 295 1 1177 105 6 6 chr13 23811557 23811719 -78061450 - AluSg/x SINE Alu -22 287 126 1408 77 0 11 chr13 23811820 23812002 -78061167 + AluSg/x SINE Alu 120 299 -11 1403 134 103 65 chr13 23812630 23812815 -78060354 - AluJo SINE Alu -10 302 101 3977 128 14 76 chr13 23812815 23813552 -78059617 + LTR8 LTR ERV1 1 691 0 1403 134 103 65 chr13 23813552 23813657 -78059512 - AluJo SINE Alu -211 101 1 2350 104 3 3 chr13 23814031 23814340 -78058829 + AluSx SINE Alu 3 311 -1 282 29 0 0 chr13 23814405 23814440 -78058729 + (TG)n Simple_repeat Simple_repeat 1 35 0 198 0 0 0 chr13 23814439 23814461 -78058708 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 775 196 28 0 chr13 23814467 23814595 -78058574 - AluJo SINE Alu -44 268 134 2198 112 6 13 chr13 23814595 23814908 -78058261 - AluSx SINE Alu -1 311 1 775 196 28 0 chr13 23814908 23814922 -78058247 - AluJo SINE Alu -178 134 122 2422 62 7 3 chr13 23816432 23816737 -78056432 - AluSp SINE Alu -7 306 1 213 234 65 39 chr13 23817056 23817133 -78056036 + MIR SINE MIR 66 144 -64 334 0 21 21 chr13 23817152 23817199 -78055970 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2141 116 0 3 chr13 23817215 23817507 -78055662 - AluSg SINE Alu -19 291 1 258 323 0 21 chr13 23818020 23818113 -78055056 + MER5A DNA MER1_type 68 158 -31 398 271 129 13 chr13 23818148 23818303 -78054866 + MER5A DNA MER1_type 8 180 -9 21 0 0 0 chr13 23818441 23818462 -78054707 + AT_rich Low_complexity Low_complexity 1 21 0 1873 197 21 0 chr13 23819135 23819475 -78053694 + MER7A DNA MER2_type 1 345 -1 2440 81 3 0 chr13 23819909 23820207 -78052962 + AluSp SINE Alu 1 299 -14 339 314 39 39 chr13 23821626 23821830 -78051339 - MIR3 SINE MIR 0 208 5 2065 133 17 0 chr13 23823853 23824146 -78049023 + AluSx SINE Alu 1 298 -14 270 280 197 0 chr13 23824467 23824599 -78048570 - MIR SINE MIR -25 237 80 808 169 7 7 chr13 23825219 23825355 -78047814 + AluJo SINE Alu 1 136 -176 2041 139 16 7 chr13 23826801 23827110 -78046059 + AluJb SINE Alu 1 312 0 195 154 39 58 chr13 23827601 23827653 -78045516 + L2 LINE L2 3220 3270 -2 2389 68 7 3 chr13 23828429 23828722 -78044447 - AluSc SINE Alu -15 294 1 305 233 226 15 chr13 23828810 23828943 -78044226 + MER20B DNA MER1_type 29 189 -594 1779 116 105 0 chr13 23829072 23829339 -78043830 - AluSx SINE Alu -17 295 1 1441 200 75 8 chr13 23829859 23830165 -78043004 - MLT1A2 LTR MaLR 0 593 55 381 303 69 6 chr13 23830201 23830376 -78042793 + MIR SINE MIR 20 205 -57 2433 69 0 29 chr13 23830394 23830700 -78042469 - AluY SINE Alu -14 297 1 834 207 12 6 chr13 23830709 23830873 -78042296 - FAM SINE Alu -10 165 1 438 217 40 63 chr13 23832016 23832188 -78040981 - L1ME3A LINE L1 -1 6163 5996 2480 63 7 7 chr13 23834502 23834805 -78038364 + AluY SINE Alu 1 303 -8 2305 93 0 13 chr13 23836013 23836313 -78036856 - AluSx SINE Alu -16 296 1 2452 83 0 0 chr13 23837059 23837360 -78035809 + AluSg SINE Alu 1 301 -9 779 294 16 13 chr13 23838649 23838962 -78034207 + L1PA16 LINE L1 2 315 -7266 240 682 0 0 chr13 23838965 23839122 -78034047 + C-rich Low_complexity Low_complexity 1 157 0 13218 225 38 25 chr13 23839136 23842842 -78030327 + L1PA16 LINE L1 320 4930 -2674 2157 108 10 3 chr13 23842842 23843138 -78030031 + AluSg SINE Alu 1 298 -12 13218 225 38 25 chr13 23843138 23845837 -78027332 + L1PA16 LINE L1 4930 7591 -13 1933 155 10 13 chr13 23846998 23847307 -78025862 + AluJb SINE Alu 1 308 -4 254 222 16 0 chr13 23848071 23848134 -78025035 + (TA)n Simple_repeat Simple_repeat 2 65 0 2242 96 17 0 chr13 23848536 23848829 -78024340 - AluSc SINE Alu -11 298 1 2575 48 0 16 chr13 23848834 23849143 -78024026 - AluY SINE Alu -7 304 1 846 50 117 0 chr13 23849279 23849399 -78023770 + MER85 DNA T2_type 4 137 -2 2767 196 44 7 chr13 23851107 23851703 -78021466 - MER54A LTR ERVL 0 901 284 895 132 0 0 chr13 23851703 23851824 -78021345 + FRAM SINE Alu 28 148 -28 2036 101 11 0 chr13 23851824 23852102 -78021067 - AluSp SINE Alu -16 297 17 23 0 0 0 chr13 23852102 23852125 -78021044 + AT_rich Low_complexity Low_complexity 1 23 0 21 119 0 0 chr13 23852206 23852332 -78020837 + AT_rich Low_complexity Low_complexity 1 126 0 225 94 0 0 chr13 23852745 23852777 -78020392 + (TG)n Simple_repeat Simple_repeat 1 32 0 2279 114 0 0 chr13 23852927 23853235 -78019934 - AluSc SINE Alu -1 308 1 23 78 0 0 chr13 23853262 23853313 -78019856 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr13 23853421 23853449 -78019720 + AT_rich Low_complexity Low_complexity 1 28 0 2399 103 3 0 chr13 23854007 23854319 -78018850 + AluSp SINE Alu 1 313 0 628 193 0 6 chr13 23854341 23854583 -78018586 + AluJ SINE Alu 1 295 -17 40951 32 23 1 chr13 23854590 23860638 -78012531 + L1PA2 LINE L1 3 6155 0 296 241 143 9 chr13 23860929 23861041 -78012128 - MIR SINE MIR -55 207 81 227 362 103 9 chr13 23861130 23861362 -78011807 - L2 LINE L2 -668 2646 2393 495 348 17 6 chr13 23861827 23862005 -78011164 + MER5A DNA MER1_type 7 186 -3 2260 132 0 7 chr13 23862749 23863059 -78010110 + AluSx SINE Alu 1 308 -4 282 357 94 22 chr13 23863150 23863374 -78009795 - L3b LINE CR1 -219 1364 1125 24913 57 5 0 chr13 23863502 23867638 -78005531 + L1PA6 LINE L1 1997 6149 -5 8636 203 21 43 chr13 23867632 23868212 -78004957 + L1 LINE L1 2920 3512 -2634 * 2251 106 3 3 chr13 23868212 23868514 -78004655 + AluSg SINE Alu 1 302 -8 8636 203 21 43 chr13 23868514 23869030 -78004139 + L1 LINE L1 3512 4038 -2108 2170 120 7 0 chr13 23869030 23869329 -78003840 + AluSx SINE Alu 1 301 -11 8636 203 21 43 chr13 23869329 23870761 -78002408 + L1 LINE L1 4038 5392 -754 1264 124 27 0 chr13 23870756 23870981 -78002188 + L1PA16 LINE L1 5602 5832 -334 * 301 136 0 34 chr13 23870991 23871050 -78002119 + L1P4 LINE L1 5778 5834 -332 2096 158 5 23 chr13 23871058 23871116 -78002053 + L1PA16 LINE L1 5778 5836 -330 2430 89 0 0 chr13 23871116 23871418 -78001751 + AluSq SINE Alu 3 304 -9 2096 158 5 23 chr13 23871418 23871745 -78001424 + L1PA16 LINE L1 5836 6156 -10 656 278 36 26 chr13 23871835 23872144 -78001025 + L1ME LINE L1 3837 4148 -1998 2105 257 89 107 chr13 23872371 23873717 -77999452 + L1ME LINE L1 2586 3955 -2207 2037 138 16 0 chr13 23873717 23874022 -77999147 - AluSx SINE Alu -2 310 1 2105 257 89 107 chr13 23874022 23874054 -77999115 + L1ME LINE L1 3955 3986 -2176 324 0 0 0 chr13 23874054 23874090 -77999079 + (CA)n Simple_repeat Simple_repeat 2 37 0 2105 257 89 107 chr13 23874090 23874433 -77998736 + L1ME LINE L1 3986 4334 -1828 909 137 0 0 chr13 23874433 23874557 -77998612 + AluJb SINE Alu 168 291 -21 2105 257 89 107 chr13 23874557 23875886 -77997283 + L1ME LINE L1 4334 5705 -457 2275 121 0 0 chr13 23875886 23876184 -77996985 + AluSx SINE Alu 1 298 -14 2105 257 89 107 chr13 23876184 23876228 -77996941 + L1ME LINE L1 5705 5748 -414 400 252 19 7 chr13 23876359 23876514 -77996655 + L1ME LINE L1 4536 4692 -1454 553 292 113 52 chr13 23876560 23876886 -77996283 + L1ME LINE L1 4813 5176 -970 1894 165 0 7 chr13 23876886 23877183 -77995986 + AluJo SINE Alu 3 297 -15 553 292 113 52 chr13 23877183 23877315 -77995854 + L1ME LINE L1 5176 5299 -847 343 169 26 13 chr13 23877632 23877709 -77995460 - MER116 DNA Mariner 0 80 3 5440 134 55 15 chr13 23878233 23879423 -77993746 + L1MA8 LINE L1 4770 6029 -262 2280 108 10 3 chr13 23879423 23879728 -77993441 - AluSq SINE Alu -6 307 1 5440 134 55 15 chr13 23879728 23880002 -77993167 + L1MA8 LINE L1 6029 6291 0 315 276 31 0 chr13 23880132 23880230 -77992939 + CT-rich Low_complexity Low_complexity 2 102 0 24 32 0 0 chr13 23880464 23880495 -77992674 + AT_rich Low_complexity Low_complexity 1 31 0 216 228 0 0 chr13 23882133 23882190 -77990979 + (TA)n Simple_repeat Simple_repeat 1 57 0 389 221 255 0 chr13 23883084 23883233 -77989936 + L1ME LINE L1 5575 5761 -360 480 176 0 0 chr13 23883288 23883390 -77989779 + (TA)n Simple_repeat Simple_repeat 1 102 0 2544 59 0 3 chr13 23883390 23883696 -77989473 - AluY SINE Alu -6 305 1 2375 104 0 3 chr13 23883707 23884015 -77989154 - AluSq SINE Alu -6 307 1 188 149 21 0 chr13 23884199 23884246 -77988923 + (TA)n Simple_repeat Simple_repeat 1 48 0 903 186 127 51 chr13 23885526 23885763 -77987406 + AluJo SINE Alu 49 303 -9 254 231 39 13 chr13 23886248 23886326 -77986843 + MLT1H LTR MaLR 4 83 -466 2597 249 108 21 chr13 23886547 23887125 -77986044 + L1M4 LINE L1 3670 4196 -1950 1429 160 103 39 chr13 23887125 23887406 -77985763 + AluJo SINE Alu 1 299 -13 2597 249 108 21 chr13 23887406 23887686 -77985483 + L1M4 LINE L1 4196 4450 -1696 324 94 0 0 chr13 23887686 23887739 -77985430 + (TG)n Simple_repeat Simple_repeat 2 54 0 2597 249 108 21 chr13 23887739 23888118 -77985051 + L1M4 LINE L1 4450 5016 -1130 299 198 44 11 chr13 23888125 23888216 -77984953 + L1ME3 LINE L1 6067 6160 -2 234 255 0 0 chr13 23888223 23888274 -77984895 + (CATA)n Simple_repeat Simple_repeat 4 54 0 2824 83 20 0 chr13 23888290 23888685 -77984484 - L1PA11 LINE L1 -3 6171 5769 495 89 258 0 chr13 23889677 23889786 -77983383 - L1M2 LINE L1 -387 5787 5661 328 132 0 0 chr13 23889798 23889851 -77983318 - AluSg SINE Alu -215 85 33 204 40 0 0 chr13 23890070 23890095 -77983074 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 40731 36 22 1 chr13 23890283 23896310 -77976859 - L1PA3 LINE L1 0 6155 1 21 57 0 0 chr13 23897664 23897699 -77975470 + AT_rich Low_complexity Low_complexity 1 35 0 1269 195 10 70 chr13 23897810 23898112 -77975057 + AluJo SINE Alu 13 296 -16 1046 164 50 50 chr13 23948188 23948408 -77924761 + ERVL-B3 LTR ERVL 5536 5755 -9 1376 127 73 70 chr13 23948410 23948526 -77924643 + MLT2B3 LTR ERVL 1 115 -439 1815 146 42 0 chr13 23948526 23948813 -77924356 - AluJb SINE Alu -11 301 3 1376 127 73 70 chr13 23948813 23948955 -77924214 + MLT2B3 LTR ERVL 115 260 -294 1468 275 79 55 chr13 23948955 23949594 -77923575 - L2 LINE L2 -879 2435 1778 1743 184 7 26 chr13 23949594 23949899 -77923270 + AluJb SINE Alu 1 299 -13 1468 275 79 55 chr13 23949899 23949929 -77923240 - L2 LINE L2 -1536 1778 1750 1603 197 16 7 chr13 23950012 23950321 -77922848 + AluJb SINE Alu 1 312 0 396 224 103 67 chr13 23950423 23950588 -77922581 + MIR3 SINE MIR 33 203 -5 2300 96 0 7 chr13 23950671 23950974 -77922195 + AluSg1 SINE Alu 1 301 -8 2434 91 0 0 chr13 23951341 23951650 -77921519 - AluSq SINE Alu -3 310 2 1720 175 36 7 chr13 23951840 23952143 -77921026 + AluJo SINE Alu 1 312 0 518 299 147 5 chr13 23952446 23952657 -77920512 + MIR SINE MIR 4 244 -18 612 205 117 2 chr13 23952660 23952814 -77920355 + L1MD2 LINE L1 5750 5918 -263 1656 149 20 0 chr13 23952824 23953073 -77920096 + MER1B DNA MER1_type 86 339 0 919 212 69 27 chr13 23953074 23953347 -77919822 + L1ME1 LINE L1 5901 6135 -31 1739 206 97 10 chr13 23953347 23953749 -77919420 + L1MD3 LINE L1 7559 7995 0 23 0 0 0 chr13 23954049 23954072 -77919097 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chr13 23954585 23954629 -77918540 + L2 LINE L2 3265 3308 -5 198 143 0 0 chr13 23954976 23955011 -77918158 + (A)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chr13 23955107 23955133 -77918036 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2306 84 0 53 chr13 23955155 23955478 -77917691 - AluY SINE Alu -5 306 1 5817 33 0 0 chr13 23955734 23956370 -77916799 + L1PA5 LINE L1 5510 6145 -9 22 0 0 0 chr13 23956370 23956392 -77916777 + AT_rich Low_complexity Low_complexity 1 22 0 225 320 64 13 chr13 23956640 23956718 -77916451 - MIR SINE MIR -161 101 20 2465 87 0 3 chr13 23956777 23957088 -77916081 + AluSg SINE Alu 1 310 0 2174 113 3 0 chr13 23957672 23957963 -77915206 + AluSq SINE Alu 1 292 -21 879 138 0 23 chr13 23958032 23958162 -77915007 - FLAM_C SINE Alu -6 127 1 21 0 0 0 chr13 23958168 23958189 -77914980 + AT_rich Low_complexity Low_complexity 1 21 0 190 156 62 109 chr13 23958799 23958814 -77914355 + MIR SINE MIR 201 215 -47 2342 96 0 3 chr13 23958814 23959116 -77914053 + AluSx SINE Alu 1 301 -11 190 156 62 109 chr13 23959116 23959164 -77914005 + MIR SINE MIR 215 261 -1 697 288 175 31 chr13 23959845 23960171 -77912998 - L2 LINE L2 -502 2812 2440 207 220 0 60 chr13 23960172 23960222 -77912947 + MIR SINE MIR 210 256 -6 2199 115 3 6 chr13 23960423 23960737 -77912432 + AluSq SINE Alu 1 313 0 271 333 140 71 chr13 23960755 23961497 -77911672 + L2 LINE L2 2128 2920 -394 * 708 285 54 16 chr13 23961487 23961729 -77911440 - MIR SINE MIR -10 252 2 469 197 31 79 chr13 23962282 23962343 -77910826 - MER5A DNA MER1_type -68 121 68 2167 123 0 0 chr13 23962343 23962636 -77910533 + AluSx SINE Alu 1 293 -19 469 197 31 79 chr13 23962636 23962701 -77910468 - MER5A DNA MER1_type -121 68 1 2100 122 0 16 chr13 23962942 23963245 -77909924 - AluSx SINE Alu -14 298 1 558 318 76 14 chr13 23963474 23963697 -77909472 + L2 LINE L2 2805 3041 -272 2458 71 7 0 chr13 23965180 23965488 -77907681 + AluSg SINE Alu 1 310 0 279 0 0 0 chr13 23965490 23965521 -77907648 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 238 110 66 chr13 23966016 23966772 -77906397 - L1M4 LINE L1 -1353 4793 3883 35 41 0 0 chr13 23966772 23966821 -77906348 + AT_rich Low_complexity Low_complexity 1 49 0 1884 178 152 8 chr13 23966884 23967278 -77905891 - LTR32 LTR ERVL -7 464 14 374 227 76 74 chr13 23967373 23967406 -77905763 + L1ME3 LINE L1 5381 5412 -758 1902 141 14 0 chr13 23967406 23967697 -77905472 + AluSx SINE Alu 1 295 -17 374 227 76 74 chr13 23967697 23967860 -77905309 + L1ME3 LINE L1 5412 5578 -592 2368 155 29 3 chr13 23968009 23968390 -77904779 - MSTA LTR MaLR -37 391 1 1206 224 171 21 chr13 23968390 23968860 -77904309 + L1ME3 LINE L1 5582 6127 -35 1523 154 61 39 chr13 23968862 23969168 -77904001 + AluJo SINE Alu 3 314 0 653 164 52 177 chr13 23969829 23969979 -77903190 + L1M4 LINE L1 4339 4506 -1640 1986 107 4 0 chr13 23969979 23970251 -77902918 + AluSp SINE Alu 41 313 0 653 164 52 177 chr13 23970251 23970293 -77902876 + L1M4 LINE L1 4506 4552 -1594 2402 43 3 10 chr13 23970293 23970594 -77902575 + AluY SINE Alu 1 299 -12 653 164 52 177 chr13 23970594 23970710 -77902459 + L1M4 LINE L1 4552 4609 -1537 625 149 16 58 chr13 23970716 23970837 -77902332 + FLAM_A SINE Alu 22 137 -5 236 160 0 40 chr13 23970837 23970887 -77902282 + L1M4 LINE L1 4604 4651 -1495 2346 96 0 0 chr13 23970893 23971195 -77901974 + AluSx SINE Alu 1 302 -10 273 330 9 19 chr13 23971212 23971278 -77901891 - MER5A DNA MER1_type -75 114 48 1444 169 37 30 chr13 23971278 23971574 -77901595 + AluJb SINE Alu 1 298 -14 273 330 9 19 chr13 23971574 23971613 -77901556 - MER5A DNA MER1_type -141 48 10 1229 174 9 0 chr13 23971715 23971928 -77901241 - AluJb SINE Alu -12 300 86 234 278 41 52 chr13 23971973 23972070 -77901099 + MER21B LTR ERV1 1 96 -767 2624 226 59 35 chr13 23972109 23972800 -77900369 + MER21B LTR ERV1 98 805 -58 332 263 32 11 chr13 23972856 23972951 -77900218 + L2 LINE L2 3216 3312 -1 1927 155 0 3 chr13 23973139 23973435 -77899734 - AluJb SINE Alu -15 297 3 1163 179 134 70 chr13 23973673 23973823 -77899346 + MSTC LTR MaLR 1 140 -288 2204 103 3 0 chr13 23973823 23974132 -77899037 + AluSp SINE Alu 1 310 0 1163 179 134 70 chr13 23974132 23974382 -77898787 + MSTC LTR MaLR 140 428 0 262 259 71 0 chr13 23974448 23974533 -77898636 + L1ME LINE L1 5767 5857 -264 2174 113 0 7 chr13 23974680 23974980 -77898189 + AluSx SINE Alu 5 302 -10 22 35 0 0 chr13 23975220 23975249 -77897920 + AT_rich Low_complexity Low_complexity 1 29 0 385 208 131 69 chr13 23975885 23976015 -77897154 - MIR3 SINE MIR -6 202 65 2233 106 10 0 chr13 23977603 23977906 -77895263 - AluSp SINE Alu -7 306 1 1795 90 4 8 chr13 23978862 23979096 -77894073 - AluSg/x SINE Alu -14 298 66 344 261 127 28 chr13 23979277 23979419 -77893750 - MIR SINE MIR -105 157 2 557 283 66 6 chr13 23979735 23979901 -77893268 + MIR SINE MIR 25 200 -62 3613 198 59 24 chr13 23979901 23980779 -77892390 + L1ME1 LINE L1 5254 6162 -4 2030 121 7 0 chr13 23980803 23981084 -77892085 + AluSx SINE Alu 1 283 -29 253 160 7 0 chr13 23981097 23981153 -77892016 + L1PA7 LINE L1 6091 6166 -6 218 330 85 28 chr13 23981957 23982063 -77891106 + L2 LINE L2 3159 3270 -2 27 29 0 0 chr13 23982330 23982364 -77890805 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr13 23982494 23982517 -77890652 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1341 143 6 163 chr13 23982532 23982881 -77890288 - AluJo SINE Alu -18 294 1 208 125 0 100 chr13 23983597 23983637 -77889532 - MIR3 SINE MIR -22 186 151 230 223 152 45 chr13 23983721 23983833 -77889336 - MIR3 SINE MIR -27 181 58 458 163 35 0 chr13 23983838 23983924 -77889245 - L2 LINE L2 -2 3311 3223 17740 147 58 14 chr13 23983942 23986938 -77886231 + ERVL LTR ERVL 2409 5538 -226 2207 100 0 36 chr13 23986938 23987247 -77885922 - AluSg SINE Alu -12 298 1 2112 135 0 7 chr13 23987292 23987595 -77885574 - AluSx SINE Alu -11 301 1 467 291 106 5 chr13 23987956 23988145 -77885024 + MIR SINE MIR 2 209 -53 27 29 0 0 chr13 23988183 23988217 -77884952 + AT_rich Low_complexity Low_complexity 1 34 0 353 298 78 0 chr13 23988308 23988449 -77884720 + L1MC4 LINE L1 7890 8041 -1 1328 197 80 24 chr13 23988529 23988818 -77884351 + AluJo SINE Alu 1 305 -7 1183 148 51 5 chr13 23989120 23989337 -77883832 + MER46A DNA MER2_type 6 232 -4 279 0 0 0 chr13 23989865 23989896 -77883273 + (A)n Simple_repeat Simple_repeat 1 31 0 1801 179 0 3 chr13 23991146 23991437 -77881732 - AluJo SINE Alu -22 290 1 1968 140 3 7 chr13 23992008 23992300 -77880869 - AluJb SINE Alu -21 291 1 205 297 0 31 chr13 23993657 23993721 -77879448 - L3 LINE CR1 -1199 378 317 301 284 49 39 chr13 23994805 23994907 -77878262 - L1MEd LINE L1 -4741 1390 1288 464 201 169 44 chr13 23995096 23995327 -77877842 - L1MEd LINE L1 -4917 1202 931 1905 134 31 14 chr13 23995327 23995617 -77877552 - AluSx SINE Alu -17 295 1 464 201 169 44 chr13 23995617 23995658 -77877511 - L1MEd LINE L1 -5188 931 896 652 192 53 0 chr13 23995704 23995855 -77877314 - L1MA10 LINE L1 -1 6333 6175 285 171 27 95 chr13 23995855 23995968 -77877201 - L1ME2 LINE L1 -151 6015 5917 339 147 0 44 chr13 23995976 23996044 -77877125 + Tigger2 DNA MER2_type 5 69 -2649 * 925 130 0 12 chr13 23996034 23996196 -77876973 + Tigger2 DNA MER2_type 2273 2432 -286 911 180 12 30 chr13 23996196 23996363 -77876806 + AluJo SINE Alu 1 164 -148 284 238 48 0 chr13 23996365 23996428 -77876741 + Tigger2 DNA MER2_type 2653 2718 0 315 202 18 37 chr13 23996446 23996555 -77876614 - L1ME2 LINE L1 -279 5887 5781 443 83 0 0 chr13 23996558 23996618 -77876551 + Alu SINE Alu 235 294 -15 385 184 11 0 chr13 23996620 23996707 -77876462 + L1M4 LINE L1 5688 5775 -409 1613 141 12 0 chr13 23996740 23996982 -77876187 + AluSx SINE Alu 1 245 -67 708 319 59 12 chr13 23997010 23997418 -77875751 + L1MEd LINE L1 474 900 -5219 798 239 0 10 chr13 23997430 23997627 -77875542 + L1MEc LINE L1 37 231 -6165 492 187 16 32 chr13 23997635 23997758 -77875411 + L1ME LINE L1 5564 5684 -482 * 524 277 86 26 chr13 23997739 23998006 -77875163 - L1MEd LINE L1 -5669 450 168 25 31 0 0 chr13 23998437 23998469 -77874700 + AT_rich Low_complexity Low_complexity 1 32 0 2130 131 0 0 chr13 23998474 23998764 -77874405 - AluSq SINE Alu -23 290 1 1808 170 13 3 chr13 23998827 23999133 -77874036 - AluJo SINE Alu -3 309 1 337 333 80 84 chr13 23999869 24000320 -77872849 + L2 LINE L2 2809 3257 -15 25 31 0 0 chr13 24001007 24001039 -77872130 + AT_rich Low_complexity Low_complexity 1 32 0 1931 148 21 3 chr13 24001072 24001362 -77871807 + AluSx SINE Alu 6 300 -12 778 236 48 75 chr13 24001363 24001761 -77871408 - L1MC5 LINE L1 -287 7674 7288 1645 154 0 101 chr13 24001833 24002170 -77870999 - AluJo SINE Alu -6 306 4 587 181 56 95 chr13 24002176 24002456 -77870713 - L1MC5 LINE L1 -34 7927 7658 2373 91 3 0 chr13 24002456 24002753 -77870416 - AluSp SINE Alu -15 298 1 587 181 56 95 chr13 24002753 24002776 -77870393 - L1MC5 LINE L1 -303 7658 7636 1854 167 86 3 chr13 24002776 24003136 -77870033 + MLT1B LTR MaLR 1 390 0 897 123 152 6 chr13 24003727 24003898 -77869271 + MSTA LTR MaLR 1 196 -232 6580 66 21 35 chr13 24003898 24005889 -77867280 + SVA Other Other 7 1386 0 4616 26 0 0 chr13 24005936 24006473 -77866696 - L1PA2 LINE L1 -5 6150 5614 4144 20 0 0 chr13 24006473 24006974 -77866195 + L1P LINE L1 4507 5007 -1139 6409 59 35 38 chr13 24007173 24008218 -77864951 + SVA Other Other 433 1386 0 458 143 92 59 chr13 24008250 24008303 -77864866 + LTR49-int LTR ERV1 3141 3191 -3140 2158 138 3 6 chr13 24008303 24008615 -77864554 - AluSq SINE Alu -2 311 1 458 143 92 59 chr13 24008615 24008680 -77864489 + LTR49-int LTR ERV1 3191 3263 -3068 319 200 0 0 chr13 24008734 24008794 -77864375 + LTR49-int LTR ERV1 3275 3334 -2997 457 194 20 0 chr13 24008857 24008955 -77864214 + LTR49-int LTR ERV1 3348 3447 -2884 186 43 0 0 chr13 24009132 24009155 -77864014 + (A)n Simple_repeat Simple_repeat 1 23 0 1320 96 87 30 chr13 24009156 24009386 -77863783 + MSTA LTR MaLR 186 428 0 245 343 14 0 chr13 24009554 24009627 -77863542 - L2 LINE L2 -44 3228 3155 788 191 0 0 chr13 24010036 24010167 -77863002 + FLAM_A SINE Alu 1 131 -2 2270 97 0 7 chr13 24010838 24011138 -77862031 + AluSc SINE Alu 1 298 -11 423 273 42 35 chr13 24011400 24011543 -77861626 - MIR3 SINE MIR -1 207 64 2348 185 79 84 chr13 24011567 24012245 -77860924 - L1MC4 LINE L1 -5 8037 7362 734 167 0 0 chr13 24012245 24012359 -77860810 - FLAM_A SINE Alu -18 115 2 2348 185 79 84 chr13 24012359 24012473 -77860696 - L1MC4 LINE L1 -680 7362 7249 673 159 0 0 chr13 24012498 24012605 -77860564 - AluSg/x SINE Alu -16 293 187 994 206 0 0 chr13 24013029 24013204 -77859965 + FAM SINE Alu 1 175 0 21 0 0 0 chr13 24013771 24013792 -77859377 + AT_rich Low_complexity Low_complexity 1 21 0 1940 136 19 10 chr13 24013915 24014223 -77858946 + AluSx SINE Alu 1 311 -1 430 261 187 25 chr13 24014535 24014738 -77858431 - MIR SINE MIR -21 241 6 2315 90 3 3 chr13 24015142 24015441 -77857728 + AluSc SINE Alu 2 300 -9 1600 154 60 101 chr13 24015792 24016076 -77857093 - MLT1C LTR MaLR 0 467 210 1780 154 0 0 chr13 24016076 24016349 -77856820 - AluJb SINE Alu -39 273 1 1600 154 60 101 chr13 24016349 24016551 -77856618 - MLT1C LTR MaLR -257 210 1 2137 130 7 3 chr13 24016854 24017154 -77856015 + AluSx SINE Alu 1 301 -11 448 269 100 0 chr13 24017335 24017495 -77855674 + MER5B DNA MER1_type 3 178 0 508 286 65 39 chr13 24018893 24019125 -77854044 + MIR SINE MIR 30 260 -2 2055 119 7 7 chr13 24019205 24019500 -77853669 - AluJo SINE Alu -12 300 6 334 265 10 0 chr13 24019692 24019790 -77853379 + L1ME3A LINE L1 6072 6170 0 1999 167 0 0 chr13 24020331 24020630 -77852539 - AluJb SINE Alu -11 301 3 438 256 78 85 chr13 24020922 24021180 -77851989 + MIR SINE MIR 7 262 0 238 238 32 16 chr13 24021234 24021297 -77851872 - L1P LINE L1 -2471 3675 3612 1003 224 10 15 chr13 24021328 24021533 -77851636 - AluJo SINE Alu -25 287 84 295 250 83 0 chr13 24022635 24022707 -77850462 - MIR SINE MIR -173 89 12 1813 171 23 0 chr13 24022864 24023163 -77850006 - AluJo SINE Alu -6 306 1 252 268 163 26 chr13 24024217 24024370 -77848799 - MIR SINE MIR -12 250 77 1970 170 10 24 chr13 24025323 24025741 -77847428 + L1MB8 LINE L1 5761 6172 -6 670 280 147 5 chr13 24025922 24026140 -77847029 + MIR SINE MIR 12 260 -2 2217 101 7 16 chr13 24027890 24028197 -77844972 - AluSp SINE Alu -8 305 2 491 286 119 80 chr13 24029047 24029451 -77843718 + L1M4 LINE L1 4600 5037 -1109 2219 114 0 3 chr13 24029451 24029758 -77843411 + AluSc SINE Alu 1 306 -3 491 286 119 80 chr13 24029758 24029957 -77843212 + L1M4 LINE L1 5037 5227 -919 247 252 194 7 chr13 24030079 24030218 -77842951 + L1M2 LINE L1 5399 5563 -737 242 345 0 0 chr13 24030472 24030588 -77842581 + T-rich Low_complexity Low_complexity 1 116 0 440 167 10 0 chr13 24031251 24031347 -77841822 + (TA)n Simple_repeat Simple_repeat 2 98 0 404 174 0 31 chr13 24031717 24031755 -77841414 + MER53 DNA DNA 95 133 -56 2269 109 0 3 chr13 24031755 24032059 -77841110 + AluSx SINE Alu 1 303 -9 404 174 0 31 chr13 24032059 24032118 -77841051 + MER53 DNA DNA 133 189 0 2382 104 0 0 chr13 24032679 24032978 -77840191 + AluSq SINE Alu 1 299 -14 2022 160 0 3 chr13 24033310 24033623 -77839546 + AluSx SINE Alu 1 312 0 208 319 14 0 chr13 24033689 24033761 -77839408 - MIR3 SINE MIR -11 197 125 2234 112 0 7 chr13 24033873 24034169 -77839000 - AluSx SINE Alu -18 294 1 2075 154 0 3 chr13 24034383 24034681 -77838488 - AluSx SINE Alu -15 297 1 1083 150 0 0 chr13 24034723 24034876 -77838293 + FRAM SINE Alu 5 157 -19 2048 102 25 3 chr13 24035544 24035828 -77837341 - AluSc SINE Alu -19 290 1 23 0 0 0 chr13 24035950 24035973 -77837196 + AT_rich Low_complexity Low_complexity 1 23 0 442 223 117 0 chr13 24036156 24036250 -77836919 - L2 LINE L2 -10 3303 3199 21 0 0 0 chr13 24036321 24036342 -77836827 + AT_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr13 24036826 24036892 -77836277 + AT_rich Low_complexity Low_complexity 1 66 0 2079 122 27 3 chr13 24037264 24037560 -77835609 + AluSg SINE Alu 5 307 -3 627 142 8 16 chr13 24037563 24037690 -77835479 + GA-rich Low_complexity Low_complexity 3 128 0 1796 158 0 47 chr13 24037722 24038039 -77835130 + AluJo SINE Alu 1 302 -10 1661 176 6 53 chr13 24038105 24038428 -77834741 + AluJb SINE Alu 1 308 -4 2200 98 17 0 chr13 24038959 24039255 -77833914 + AluSx SINE Alu 1 301 -11 2112 131 155 78 chr13 24039258 24039786 -77833383 + L1MC3 LINE L1 7206 7774 -11 806 174 0 0 chr13 24039830 24039962 -77833207 - FLAM_C SINE Alu -1 132 1 311 293 152 30 chr13 24040509 24040673 -77832496 - MIR SINE MIR -71 191 8 1752 176 7 13 chr13 24041869 24042170 -77830999 - AluJo SINE Alu -13 299 1 1984 137 3 3 chr13 24042746 24043045 -77830124 + AluSx SINE Alu 1 299 -13 206 360 64 12 chr13 24043583 24043755 -77829414 + L2 LINE L2 2637 2817 -497 1325 237 27 17 chr13 24043862 24044272 -77828897 + L1M4 LINE L1 4748 5161 -985 2209 78 62 0 chr13 24044372 24044694 -77828475 + L1MC1 LINE L1 5538 5879 -454 1417 123 24 44 chr13 24044694 24044944 -77828225 + L1MC1 LINE L1 6083 6328 -5 2308 95 0 0 chr13 24045420 24045714 -77827455 - AluSg SINE Alu -16 294 1 852 141 8 0 chr13 24045718 24045846 -77827323 - FLAM_C SINE Alu 0 133 5 1715 155 24 3 chr13 24046027 24046323 -77826846 + AluJb SINE Alu 1 302 -10 1918 150 67 3 chr13 24046390 24046717 -77826452 + MER7A DNA MER2_type 1 346 0 965 172 53 6 chr13 24046964 24047133 -77826036 + AluSx SINE Alu 42 218 -94 1638 138 106 0 chr13 24048396 24048678 -77824491 - AluSx SINE Alu 0 312 1 22 35 0 0 chr13 24049024 24049053 -77824116 + AT_rich Low_complexity Low_complexity 1 29 0 773 101 72 203 chr13 24049054 24049136 -77824033 + L1 LINE L1 4558 4649 -1497 2338 95 0 0 chr13 24049136 24049432 -77823737 - AluSg SINE Alu -14 296 1 773 101 72 203 chr13 24049432 24049463 -77823706 + L1 LINE L1 4649 4682 -1464 769 174 0 0 chr13 24049463 24049578 -77823591 + FLAM_C SINE Alu 1 115 -18 773 101 72 203 chr13 24049578 24049739 -77823430 + L1 LINE L1 4682 4797 -1349 441 239 0 0 chr13 24049739 24049827 -77823342 - L2 LINE L2 -37 3276 3189 548 275 88 0 chr13 24049882 24050042 -77823127 + FAM SINE Alu 1 174 -11 191 233 0 47 chr13 24050374 24050417 -77822752 - MER5B DNA MER1_type -99 79 39 1070 178 11 0 chr13 24050512 24050697 -77822472 + AluJo SINE Alu 1 187 -125 183 42 0 0 chr13 24050768 24050792 -77822377 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 24051058 24051088 -77822081 + AT_rich Low_complexity Low_complexity 1 30 0 199 371 136 14 chr13 24052200 24052340 -77820829 - L2 LINE L2 0 3272 3116 189 414 36 18 chr13 24052613 24052724 -77820445 + MIR SINE MIR 18 130 -132 180 0 0 0 chr13 24053602 24053622 -77819547 + (A)n Simple_repeat Simple_repeat 1 20 0 5170 198 92 35 chr13 24055709 24056877 -77816292 + Charlie1a DNA MER1_type 1 1260 -1501 683 195 8 23 chr13 24056877 24057005 -77816164 - FLAM_A SINE Alu -7 126 1 5170 198 92 35 chr13 24057005 24057207 -77815962 + Charlie1a DNA MER1_type 1260 1449 -6 266 305 97 7 chr13 24057257 24057411 -77815758 - L1ME LINE L1 -422 5699 5532 25 51 0 0 chr13 24057533 24057572 -77815597 + AT_rich Low_complexity Low_complexity 1 39 0 607 167 0 0 chr13 24057794 24057896 -77815273 - Charlie1 DNA MER1_type 0 2761 2660 759 178 0 22 chr13 24058042 24058177 -77814992 + AluJo SINE Alu 1 132 -170 751 201 30 37 chr13 24058206 24058370 -77814799 + AluJo SINE Alu 120 282 -30 186 43 0 0 chr13 24058407 24058430 -77814739 + (TG)n Simple_repeat Simple_repeat 1 23 0 217 234 208 0 chr13 24058570 24058647 -77814522 + L2 LINE L2 3221 3313 0 1881 163 0 0 chr13 24059371 24059659 -77813510 - AluJb SINE Alu -21 291 4 538 228 31 8 chr13 24059683 24059810 -77813359 - FLAM_A SINE Alu -3 130 1 1970 144 0 19 chr13 24059944 24060256 -77812913 + AluSx SINE Alu 1 306 -6 1761 161 3 47 chr13 24060450 24060772 -77812397 - AluJo SINE Alu 0 312 5 31 26 0 0 chr13 24060882 24060920 -77812249 + AT_rich Low_complexity Low_complexity 1 38 0 477 177 0 0 chr13 24061009 24061088 -77812081 - Charlie2 DNA MER1_type -2474 308 230 305 226 43 0 chr13 24061250 24061343 -77811826 + L1ME3 LINE L1 5727 5823 -339 307 265 56 51 chr13 24061355 24061551 -77811618 + L1ME3 LINE L1 5871 6067 -95 23 33 0 0 chr13 24061779 24061809 -77811360 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr13 24061848 24061883 -77811286 + AT_rich Low_complexity Low_complexity 1 35 0 206 312 37 46 chr13 24063310 24063419 -77809750 + MER5A DNA MER1_type 7 114 -75 2284 90 3 0 chr13 24064408 24064696 -77808473 + AluSp SINE Alu 5 293 -20 473 267 170 59 chr13 24064818 24065205 -77807964 - L1ME LINE L1 -421 5743 5299 189 0 0 0 chr13 24065707 24065728 -77807441 + (T)n Simple_repeat Simple_repeat 1 21 0 760 160 8 0 chr13 24065802 24065947 -77807222 - FLAM_C SINE Alu 0 146 1 2019 120 34 0 chr13 24066038 24066330 -77806839 - AluSx SINE Alu -10 302 1 1389 136 23 0 chr13 24066542 24066762 -77806407 - AluJb SINE Alu -22 290 66 1130 113 9 113 chr13 24067092 24067322 -77805847 - L1PA16 LINE L1 -12 6154 5949 1172 194 13 17 chr13 24067478 24067710 -77805459 - MIR SINE MIR -29 233 3 265 222 148 0 chr13 24067732 24067813 -77805356 + L1ME LINE L1 5689 5781 -340 633 258 45 0 chr13 24068390 24068522 -77804647 + MIR SINE MIR 36 173 -89 280 301 68 30 chr13 24068682 24068815 -77804354 - MER112 DNA MER1_type -121 139 2 28 29 0 0 chr13 24069218 24069253 -77803916 + AT_rich Low_complexity Low_complexity 1 35 0 431 299 0 0 chr13 24069666 24069763 -77803406 - MIR3 SINE MIR -27 181 85 213 272 29 48 chr13 24070090 24070193 -77802976 - MIR3 SINE MIR -41 167 67 213 241 63 38 chr13 24072711 24072790 -77800379 - L2 LINE L2 -5 3308 3228 1469 203 11 18 chr13 24072908 24073189 -77799980 + AluJo SINE Alu 1 279 -33 344 290 107 8 chr13 24074787 24074918 -77798251 + MIR SINE MIR 1 144 -118 266 236 163 24 chr13 24074923 24075046 -77798123 + MIR SINE MIR 117 256 -6 1576 37 11 0 chr13 24075564 24075753 -77797416 - AluY SINE Alu -12 299 109 234 0 0 0 chr13 24075853 24075879 -77797290 + (TA)n Simple_repeat Simple_repeat 1 26 0 504 241 115 9 chr13 24076219 24076368 -77796801 + MIR3 SINE MIR 39 208 0 24 53 0 0 chr13 24078473 24078511 -77794658 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 24079530 24079560 -77793609 + AT_rich Low_complexity Low_complexity 1 30 0 1087 137 36 0 chr13 24080350 24080518 -77792651 - AluSg/x SINE Alu -10 302 129 857 188 6 29 chr13 24081086 24081256 -77791913 + FRAM SINE Alu 1 166 0 21 71 0 0 chr13 24082019 24082061 -77791108 + AT_rich Low_complexity Low_complexity 1 42 0 263 258 30 0 chr13 24082118 24082184 -77790985 - L2 LINE L2 -6 3307 3240 326 263 132 26 chr13 24082452 24082604 -77790565 - MIR SINE MIR 0 262 95 345 309 24 42 chr13 24082707 24082875 -77790294 + MIR SINE MIR 68 232 -30 552 227 106 7 chr13 24082929 24083070 -77790099 + MIR SINE MIR 90 244 -18 2437 67 7 0 chr13 24083405 24083702 -77789467 + AluY SINE Alu 1 299 -12 180 0 0 0 chr13 24083762 24083782 -77789387 + (CATTC)n Simple_repeat Simple_repeat 5 24 0 2087 125 0 3 chr13 24084050 24084339 -77788830 + AluSg SINE Alu 2 289 -21 24 85 0 0 chr13 24084418 24084477 -77788692 + AT_rich Low_complexity Low_complexity 1 59 0 279 0 0 0 chr13 24084766 24084797 -77788372 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 5835 60 21 47 chr13 24084797 24085769 -77787400 + SVA Other Other 50 866 -520 1840 143 3 41 chr13 24085882 24086196 -77786973 - MER1B DNA MER1_type -37 302 1 233 257 122 0 chr13 24086263 24086337 -77786832 - L2 LINE L2 -24 3289 3207 344 302 158 14 chr13 24086378 24086593 -77786576 - L2 LINE L2 -241 3072 2827 1627 187 20 7 chr13 24086790 24087084 -77786085 + AluJb SINE Alu 1 298 -14 321 275 147 0 chr13 24087125 24087234 -77785935 - MER5A DNA MER1_type -22 167 43 1580 153 43 0 chr13 24087430 24087685 -77785484 - AluSx SINE Alu -24 288 23 42550 59 7 1 chr13 24087702 24093808 -77779361 - L1PA5 LINE L1 0 6154 11 1505 201 21 0 chr13 24093822 24094106 -77779063 - AluJb SINE Alu -22 290 1 456 261 197 46 chr13 24094184 24094555 -77778614 + L2 LINE L2 1729 2155 -1159 403 339 104 32 chr13 24094833 24095304 -77777865 + L2 LINE L2 2726 3221 -51 3287 153 59 65 chr13 24095409 24095960 -77777209 - L1MB2 LINE L1 -1 6170 5622 2099 110 21 0 chr13 24095960 24096242 -77776927 - AluSg SINE Alu -22 288 1 3287 153 59 65 chr13 24096242 24096418 -77776751 - L1MB2 LINE L1 -549 5622 5447 2214 125 3 13 chr13 24097320 24097633 -77775536 - AluSx SINE Alu -2 310 1 823 231 0 0 chr13 24097963 24098123 -77775046 + FRAM SINE Alu 1 160 -6 21 0 0 0 chr13 24098444 24098465 -77774704 + AT_rich Low_complexity Low_complexity 1 21 0 2235 116 0 0 chr13 24098467 24098761 -77774408 + AluSx SINE Alu 3 296 -16 359 266 58 91 chr13 24100397 24100551 -77772618 - L2 LINE L2 -1 3271 3123 247 276 47 39 chr13 24100742 24100869 -77772300 + L2 LINE L2 2932 3059 -213 1244 149 9 33 chr13 24101083 24101298 -77771871 - AluJb SINE Alu -17 295 86 2950 189 80 14 chr13 24101385 24102011 -77771158 - L1MB8 LINE L1 -2 6176 5510 491 296 177 24 chr13 24102061 24102455 -77770714 - L2 LINE L2 -94 3219 2770 1112 150 22 75 chr13 24102543 24102769 -77770400 - AluJo SINE Alu -12 300 87 1313 132 118 87 chr13 24102776 24103063 -77770106 - AluSg SINE Alu -14 296 1 2247 102 0 3 chr13 24104082 24104385 -77768784 + AluSx SINE Alu 1 302 -10 654 41 0 0 chr13 24105647 24105720 -77767449 - tRNA-Glu-GAA tRNA tRNA -2 73 1 333 118 0 0 chr13 24105816 24105867 -77767302 + (CCG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr13 24107007 24107035 -77766134 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 247 113 23 chr13 24108959 24109437 -77763732 - L1MC4a LINE L1 -1775 6033 5513 189 0 0 0 chr13 24110200 24110221 -77762948 + (A)n Simple_repeat Simple_repeat 1 21 0 467 288 105 9 chr13 24111601 24111830 -77761339 - L1ME LINE L1 -336 5785 5535 1365 144 144 4 chr13 24111903 24112160 -77761009 - AluJb SINE Alu -15 297 5 1573 150 7 37 chr13 24112309 24112582 -77760587 + AluJo SINE Alu 1 265 -47 796 158 0 15 chr13 24112955 24113088 -77760081 - L1PB4 LINE L1 0 6156 6026 277 265 100 80 chr13 24113153 24113402 -77759767 - L1ME LINE L1 -1310 4836 4583 181 30 91 0 chr13 24113539 24113572 -77759597 + A-rich Low_complexity Low_complexity 3 38 0 970 120 0 8 chr13 24114155 24114288 -77758881 + AluSq/x SINE Alu 1 132 -181 1969 95 4 0 chr13 24114291 24114543 -77758626 + AluY SINE Alu 1 253 -58 621 108 0 0 chr13 24114543 24114626 -77758543 + AluY SINE Alu 209 291 -20 1237 128 0 0 chr13 24114626 24114814 -77758355 + AluSp SINE Alu 121 308 -5 342 250 0 0 chr13 24115157 24115221 -77757948 + L2 LINE L2 3186 3249 -23 1976 137 0 16 chr13 24116671 24116978 -77756191 + AluSg SINE Alu 1 302 -8 2493 139 58 15 chr13 24117180 24117590 -77755579 - MSTA LTR MaLR 0 428 1 207 180 49 82 chr13 24118080 24118141 -77755028 - MIR3 SINE MIR -28 180 122 2114 104 13 10 chr13 24118142 24118440 -77754729 + AluSq SINE Alu 1 299 -14 2175 92 34 0 chr13 24118442 24118735 -77754434 + AluSx SINE Alu 1 303 -9 2311 71 7 10 chr13 24118845 24119140 -77754029 - AluY SINE Alu -15 296 3 426 313 149 9 chr13 24119402 24119616 -77753553 + MIR SINE MIR 6 249 -13 1693 130 0 0 chr13 24119629 24119867 -77753302 + AluSx SINE Alu 6 243 -69 31 0 0 0 chr13 24119867 24119898 -77753271 + AT_rich Low_complexity Low_complexity 1 31 0 379 272 39 0 chr13 24119986 24120089 -77753080 - MER94 DNA DNA 0 134 28 1610 197 3 10 chr13 24120292 24120586 -77752583 - AluJo SINE Alu -14 298 7 2218 113 0 13 chr13 24121181 24121492 -77751677 - AluSc SINE Alu -2 307 1 1629 158 27 30 chr13 24121920 24122256 -77750913 + L1PB4 LINE L1 3679 4013 -2133 989 170 0 0 chr13 24122257 24122416 -77750753 + AluSg/x SINE Alu 137 295 -17 5767 178 43 26 chr13 24122418 24123457 -77749712 + L1PB4 LINE L1 4003 5023 -1133 2371 106 3 0 chr13 24123457 24123769 -77749400 + AluSp SINE Alu 1 313 0 5767 178 43 26 chr13 24123769 24124200 -77748969 + L1PB4 LINE L1 5023 5445 -711 1868 102 117 11 chr13 24124200 24124474 -77748695 + AluSx SINE Alu 1 303 -9 5767 178 43 26 chr13 24124474 24125133 -77748036 + L1PB4 LINE L1 5445 6152 -4 2095 103 4 0 chr13 24125845 24126118 -77747051 + AluSc SINE Alu 18 291 -18 1815 172 7 3 chr13 24126127 24126430 -77746739 + AluJb SINE Alu 1 304 -8 913 182 0 0 chr13 24126576 24126735 -77746434 + FRAM SINE Alu 1 158 -18 1485 168 0 4 chr13 24127085 24127323 -77745846 - AluJb SINE Alu -75 237 1 349 218 158 45 chr13 24127972 24128105 -77745064 + MIR SINE MIR 104 251 -11 347 369 78 18 chr13 24128114 24128331 -77744838 + L3 LINE CR1 1329 1558 -19 214 321 0 12 chr13 24130117 24130198 -77742971 - L2 LINE L2 -964 2350 2271 849 160 0 0 chr13 24130399 24130518 -77742651 + FLAM_C SINE Alu 1 119 -14 1792 166 14 3 chr13 24130559 24130854 -77742315 - AluJo SINE Alu -10 302 5 474 192 10 120 chr13 24131290 24131498 -77741671 + L1MC5 LINE L1 7744 7928 -33 206 241 0 0 chr13 24131968 24132022 -77741147 + A-rich Low_complexity Low_complexity 5 58 0 21 0 0 0 chr13 24132038 24132059 -77741110 + AT_rich Low_complexity Low_complexity 1 21 0 2132 126 0 10 chr13 24132059 24132360 -77740809 + AluSx SINE Alu 1 298 -14 2209 115 14 0 chr13 24133374 24133670 -77739499 + AluSq SINE Alu 1 300 -13 2296 87 7 0 chr13 24135281 24135570 -77737599 + AluSx SINE Alu 11 301 -11 1239 134 0 0 chr13 24135571 24135750 -77737419 + AluSg/x SINE Alu 126 304 -8 1525 199 4 0 chr13 24135831 24136097 -77737072 + AluJo SINE Alu 26 292 -20 275 316 148 7 chr13 24136218 24136373 -77736796 - MIR SINE MIR -7 255 79 457 305 121 51 chr13 24136508 24136866 -77736303 + L2 LINE L2 2835 3224 -89 1408 160 63 63 chr13 24136866 24137166 -77736003 - AluJo SINE Alu -12 300 1 457 305 121 51 chr13 24137166 24137197 -77735972 + L2 LINE L2 3224 3251 -62 23 0 0 0 chr13 24137451 24137474 -77735695 + AT_rich Low_complexity Low_complexity 1 23 0 546 217 106 81 chr13 24137623 24137858 -77735311 - MIR SINE MIR 0 262 22 959 113 35 0 chr13 24137875 24138016 -77735153 + AluSg/x SINE Alu 157 302 -10 248 266 85 43 chr13 24138058 24138152 -77735017 + MIR SINE MIR 50 147 -61 693 198 0 8 chr13 24138516 24138637 -77734532 + FLAM_C SINE Alu 1 120 -13 33 0 0 0 chr13 24138881 24138914 -77734255 + AT_rich Low_complexity Low_complexity 1 33 0 2104 84 3 14 chr13 24141201 24141487 -77731682 - AluSc SINE Alu -26 283 1 2237 107 3 0 chr13 24141859 24142158 -77731011 - AluSp SINE Alu -10 303 4 3583 126 18 27 chr13 24142319 24142386 -77730783 + L1PA15 LINE L1 5624 5690 -475 1403 133 152 4 chr13 24142386 24142492 -77730677 + AluSq SINE Alu 1 90 -223 378 0 0 0 chr13 24142492 24142534 -77730635 + (CA)n Simple_repeat Simple_repeat 2 43 0 1403 133 152 4 chr13 24142534 24142683 -77730486 + AluSq SINE Alu 90 294 -19 3583 126 18 27 chr13 24142683 24143162 -77730007 + L1PA15 LINE L1 5690 6165 0 2482 106 116 40 chr13 24144027 24144247 -77728922 - MSTA LTR MaLR 0 428 226 2055 116 28 0 chr13 24144247 24144531 -77728638 - AluSg SINE Alu -17 293 2 2482 106 116 40 chr13 24144531 24144708 -77728461 - MSTA LTR MaLR -202 226 1 2545 52 0 7 chr13 24145467 24145775 -77727394 - AluY SINE Alu -5 306 1 404 274 36 143 chr13 24145893 24146404 -77726765 - L2 LINE L2 -94 3219 2655 198 71 0 0 chr13 24146404 24146432 -77726737 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 404 274 36 143 chr13 24146432 24146518 -77726651 - L2 LINE L2 -658 2655 2698 1521 191 0 4 chr13 24146518 24146769 -77726400 + AluJb SINE Alu 1 250 -62 404 274 36 143 chr13 24146769 24146799 -77726370 - L2 LINE L2 -614 2699 2667 2261 189 38 5 chr13 24146923 24147372 -77725797 + MER101 LTR ERV1 11 474 0 889 204 7 0 chr13 24147449 24147601 -77725568 + FAM SINE Alu 13 165 -20 278 225 94 69 chr13 24147653 24147740 -77725429 + L2 LINE L2 1932 2026 -1288 3372 145 53 8 chr13 24147740 24148270 -77724899 - MER41C LTR ERV1 0 554 1 278 225 94 69 chr13 24148270 24148342 -77724827 + L2 LINE L2 2026 2095 -1219 203 289 62 52 chr13 24148410 24148507 -77724662 - L2 LINE L2 -11 3302 3205 193 313 84 23 chr13 24148533 24148664 -77724505 + L2 LINE L2 2232 2370 -944 224 30 30 0 chr13 24148762 24148795 -77724374 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1972 137 17 10 chr13 24149051 24149351 -77723818 + AluJo SINE Alu 1 302 -10 1523 186 249 57 chr13 24149386 24149546 -77723623 + LTR48 LTR ERV1 1 129 -658 2153 104 0 11 chr13 24149546 24149855 -77723314 + AluSx SINE Alu 1 306 0 1523 186 249 57 chr13 24149855 24150112 -77723057 + LTR48 LTR ERV1 129 335 -452 2152 134 0 0 chr13 24150112 24150410 -77722759 - AluSx SINE Alu -14 298 1 1523 186 249 57 chr13 24150410 24150645 -77722524 + LTR48 LTR ERV1 335 781 -6 323 239 76 0 chr13 24150775 24150867 -77722302 - MIR SINE MIR -15 247 149 1976 95 51 14 chr13 24150870 24151166 -77722003 + LTR23 LTR ERV1 1 307 -130 584 183 135 0 chr13 24151167 24151271 -77721898 + AluJo/FLAM SINE Alu 2 119 -193 2461 67 0 0 chr13 24151271 24151571 -77721598 - AluY SINE Alu -11 300 1 579 149 26 6 chr13 24151592 24151737 -77721432 + LTR56 LTR ERV1 318 467 0 1665 209 72 32 chr13 24151737 24152313 -77720856 + LTR56-int LTR ERV1 1 745 -4378 252 250 19 74 chr13 24152628 24152667 -77720502 + CT-rich Low_complexity Low_complexity 1 41 -61 2019 117 28 3 chr13 24152667 24152750 -77720419 - AluSx SINE Alu -14 298 218 189 0 0 0 chr13 24152750 24152771 -77720398 + (CA)n Simple_repeat Simple_repeat 1 21 0 2019 117 28 3 chr13 24152771 24152978 -77720191 - AluSx SINE Alu -94 218 1 252 250 19 74 chr13 24152978 24153046 -77720123 + CT-rich Low_complexity Low_complexity 41 102 0 1946 151 3 3 chr13 24154000 24154298 -77718871 + AluSx SINE Alu 1 298 -14 1256 190 69 84 chr13 24154312 24154644 -77718525 + LTR49-int LTR ERV1 2081 2407 -3924 * 1986 170 87 48 chr13 24154641 24155160 -77718009 - MER31-int LTR ERV1 -1489 4842 4304 786 199 63 101 chr13 24155153 24155500 -77717669 - MER31-int LTR ERV1 -1900 3036 2729 * 699 208 0 8 chr13 24155502 24155627 -77717542 + FLAM_C SINE Alu 1 124 -9 1420 214 27 10 chr13 24155636 24155930 -77717239 + AluJo SINE Alu 7 305 -7 861 221 52 0 chr13 24155938 24156092 -77717077 + FRAM SINE Alu 1 162 -4 1433 169 61 26 chr13 24156112 24156500 -77716669 - MER65-int LTR ERV1 -1941 4657 2474 880 168 15 50 chr13 24156549 24156751 -77716418 - MER65-int LTR ERV1 -2868 3730 3536 1425 176 43 109 chr13 24156838 24157423 -77715746 - MER65-int LTR ERV1 -4283 2475 1930 2429 101 0 0 chr13 24157431 24157738 -77715431 - AluSc SINE Alu -2 307 1 455 171 79 66 chr13 24157752 24157904 -77715265 - MER65-int LTR ERV1 -6371 1749 1596 3502 184 84 68 chr13 24157954 24158702 -77714467 - MER65-int LTR ERV1 -2377 2494 1610 189 0 0 0 chr13 24158702 24158723 -77714446 + (CA)n Simple_repeat Simple_repeat 2 22 0 3502 184 84 68 chr13 24158723 24158931 -77714238 - MER65-int LTR ERV1 -3261 1610 1407 1101 189 7 65 chr13 24158933 24159208 -77713961 - AluJo SINE Alu -23 289 31 830 164 5 72 chr13 24159209 24159272 -77713897 - MER65-int LTR ERV1 -3316 1555 1489 2477 73 10 0 chr13 24159272 24159573 -77713596 - AluY SINE Alu -7 304 1 830 164 5 72 chr13 24159573 24159704 -77713465 - MER65-int LTR ERV1 -3382 1489 1374 813 222 10 10 chr13 24159785 24159979 -77713190 - MER65-int LTR ERV1 -3531 1340 1147 1764 187 7 0 chr13 24160400 24160700 -77712469 + AluJb SINE Alu 1 302 -10 2542 71 0 10 chr13 24160754 24161065 -77712104 - AluSp SINE Alu -5 308 1 9701 98 8 21 chr13 24161083 24161183 -77711986 - HSMAR1 DNA Mariner -1 1286 1186 2217 105 0 3 chr13 24161183 24161477 -77711692 + AluSg SINE Alu 1 293 -17 2461 67 0 10 chr13 24161477 24161789 -77711380 + AluY SINE Alu 1 309 -2 9701 98 8 21 chr13 24161789 24162340 -77710829 - HSMAR1 DNA Mariner -100 1187 630 2196 112 7 10 chr13 24162340 24162643 -77710526 + AluSx SINE Alu 1 302 -10 9701 98 8 21 chr13 24162643 24163292 -77709877 - HSMAR1 DNA Mariner -657 630 1 2416 134 98 3 chr13 24164381 24164770 -77708399 + MSTB LTR MaLR 1 426 0 2159 78 55 42 chr13 24165769 24166077 -77707092 - AluSx SINE Alu 0 312 1 2459 159 128 0 chr13 24166478 24166917 -77706252 - LTR44 LTR ERV1 0 519 25 1802 126 4 0 chr13 24166923 24167177 -77705992 + AluSq SINE Alu 1 255 -58 427 140 0 0 chr13 24167177 24167234 -77705935 + AluSc SINE Alu 227 283 -26 525 118 0 0 chr13 24167307 24167383 -77705786 - AluJ/FRAM SINE Alu -5 307 232 1825 108 77 39 chr13 24167386 24167672 -77705497 - AluSx SINE Alu -15 297 1 476 151 0 0 chr13 24167676 24167749 -77705420 - AluJo SINE Alu -172 140 68 5622 186 43 23 chr13 24167795 24167999 -77705170 + MER21-int LTR ERV1 1648 1846 -2345 2543 21 41 0 chr13 24167999 24168290 -77704879 + AluY SINE Alu 1 303 -8 5622 186 43 23 chr13 24168290 24169165 -77704004 + MER21-int LTR ERV1 1846 2749 -1442 409 248 52 46 chr13 24169165 24169318 -77703851 - LTR38 LTR ERV1 0 556 403 1046 195 29 10 chr13 24169412 24169617 -77703552 - AluJo SINE Alu -18 294 86 2528 62 0 7 chr13 24169717 24170021 -77703148 - AluY SINE Alu -9 302 1 5140 166 24 38 chr13 24170164 24171088 -77702081 + MER21-int LTR ERV1 2746 3656 -535 1494 108 23 9 chr13 24171088 24171302 -77701867 - MER4E LTR ERV1 0 779 563 * 5598 65 18 22 chr13 24171301 24171641 -77701528 - MER4E LTR ERV1 -5 761 421 2110 125 3 0 chr13 24171641 24171938 -77701231 + AluSg SINE Alu 1 298 -12 5598 65 18 22 chr13 24171938 24172361 -77700808 - MER4E LTR ERV1 -345 421 1 2141 113 44 76 chr13 24172363 24172586 -77700583 - MER4B LTR ERV1 -214 396 190 2333 118 0 3 chr13 24172586 24172900 -77700269 + AluSq SINE Alu 1 313 0 2141 113 44 76 chr13 24172900 24173085 -77700084 - MER4B LTR ERV1 -420 190 1 1049 162 57 29 chr13 24173085 24173295 -77699874 + MER21-int LTR ERV1 3653 3868 -323 2404 103 65 0 chr13 24173300 24173641 -77699528 + MER51B LTR ERV1 15 377 0 678 146 6 4 chr13 24173653 24173836 -77699333 + MER21B-int LTR ERV1 3873 4135 -56 2828 166 62 2 chr13 24173910 24174371 -77698798 + MER21B LTR ERV1 1 492 -371 3770 124 144 17 chr13 24174371 24174444 -77698725 - LTR8A LTR ERV1 0 727 665 1933 142 3 17 chr13 24174444 24174746 -77698423 + AluJb SINE Alu 1 298 -14 3770 124 144 17 chr13 24174746 24175317 -77697852 - LTR8A LTR ERV1 -62 665 1 288 217 0 0 chr13 24175348 24175394 -77697775 + L2 LINE L2 3247 3292 -21 2145 129 0 3 chr13 24175404 24175698 -77697471 + AluSx SINE Alu 1 293 -19 500 198 45 9 chr13 24175817 24175928 -77697241 + LTR37A LTR ERV1 83 197 -229 2857 102 19 24 chr13 24175955 24176083 -77697086 - MER75 DNA T2_type 0 514 387 2232 116 0 3 chr13 24176083 24176377 -77696792 + AluSx SINE Alu 1 293 -19 2319 85 0 0 chr13 24176377 24176670 -77696499 + AluY SINE Alu 1 294 -17 2857 102 19 24 chr13 24176670 24176963 -77696206 - MER75 DNA T2_type -125 389 94 1212 133 118 0 chr13 24176963 24177158 -77696011 + AluSx SINE Alu 1 218 -94 199 0 0 61 chr13 24177181 24177214 -77695955 + (TTA)n Simple_repeat Simple_repeat 2 32 0 620 149 9 28 chr13 24177214 24177313 -77695856 - MER75 DNA T2_type -415 99 1 524 208 110 29 chr13 24177318 24177491 -77695678 + LTR37A LTR ERV1 240 426 0 858 152 7 26 chr13 24177578 24177726 -77695443 + LTR26B LTR ERV1 1 145 -386 664 100 0 20 chr13 24177726 24177826 -77695343 + MER4A LTR ERV1 1 98 -566 1384 138 23 140 chr13 24177826 24178021 -77695148 + MER4A LTR ERV1 261 450 -214 2239 80 4 0 chr13 24178021 24178297 -77694872 - AluSp SINE Alu -13 300 24 1384 138 23 140 chr13 24178297 24178490 -77694679 + MER4A LTR ERV1 450 664 0 2363 162 26 85 chr13 24178493 24178534 -77694635 + MER4A-int LTR ERV1 1 43 -6555 2495 61 0 0 chr13 24178534 24178831 -77694338 - AluY SINE Alu -14 297 1 2363 162 26 85 chr13 24178831 24179470 -77693699 + MER4A-int LTR ERV1 43 837 -5761 1407 235 70 25 chr13 24179529 24179887 -77693282 + MER4A-int LTR ERV1 1851 2224 -4107 4569 112 43 8 chr13 24179892 24180779 -77692390 + MER4B-int LTR ERV1 190 1142 -5616 342 0 0 0 chr13 24180783 24180821 -77692348 + (TG)n Simple_repeat Simple_repeat 2 39 0 2123 110 10 16 chr13 24180837 24181147 -77692022 + AluSq SINE Alu 1 308 -5 4205 96 65 7 chr13 24181152 24181858 -77691311 + MER4B-int LTR ERV1 1749 2495 -4103 1547 114 84 0 chr13 24181858 24182095 -77691074 - LTR8 LTR ERV1 -434 257 1 3912 132 76 48 chr13 24182095 24182378 -77690791 + MER4B-int LTR ERV1 2737 3011 -3587 2241 122 0 10 chr13 24182378 24182690 -77690479 + AluSg SINE Alu 1 309 -1 3912 132 76 48 chr13 24182690 24183300 -77689869 + MER4B-int LTR ERV1 3011 3655 -2943 926 150 0 0 chr13 24183300 24183440 -77689729 - AluSg/x SINE Alu 0 310 171 1314 84 9 33 chr13 24183440 24183650 -77689519 + MER4B-int LTR ERV1 3271 3350 -1665 399 57 0 0 chr13 24183650 24183703 -77689466 - LTR9 LTR ERV1 -559 53 1 * 1157 138 0 16 chr13 24183703 24183881 -77689288 + LTR26E LTR ERV1 165 339 -283 286 87 24 0 chr13 24183880 24183928 -77689241 + AluJb SINE Alu 90 131 -171 * 1654 191 17 0 chr13 24184001 24184289 -77688880 - AluJb SINE Alu -19 293 1 1304 193 65 84 chr13 24184370 24184854 -77688315 + L1MC5 LINE L1 7128 7602 -359 2436 58 3 16 chr13 24184854 24185163 -77688006 - AluY SINE Alu -5 306 2 1304 193 65 84 chr13 24185163 24185228 -77687941 + L1MC5 LINE L1 7602 7667 -294 1894 166 10 0 chr13 24185244 24185546 -77687623 - AluSx SINE Alu -7 305 1 571 136 218 36 chr13 24185619 24185729 -77687440 + AluJo/FLAM SINE Alu 2 131 -181 2355 101 3 0 chr13 24185729 24186036 -77687133 + AluSc SINE Alu 1 308 -1 1137 188 28 98 chr13 24186043 24186384 -77686785 - MLT1A2 LTR MaLR -41 333 13 2361 85 7 0 chr13 24186440 24186735 -77686434 - AluSp SINE Alu -16 297 1 514 254 40 8 chr13 24186872 24186998 -77686171 + L2 LINE L2 3182 3311 -2 606 243 136 15 chr13 24187033 24187239 -77685930 + MIR SINE MIR 5 235 -27 21 0 0 0 chr13 24187649 24187670 -77685499 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 24188049 24188072 -77685097 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 712 202 8 0 chr13 24189072 24189196 -77683973 - FLAM_A SINE Alu -8 125 1 412 254 22 15 chr13 24189379 24189513 -77683656 - L1ME4a LINE L1 -1 6120 5986 2190 111 3 10 chr13 24189514 24189820 -77683349 - AluSx SINE Alu -7 305 2 237 336 85 44 chr13 24190100 24190279 -77682890 + MIR3 SINE MIR 17 205 -3 2172 111 0 0 chr13 24190527 24190824 -77682345 - AluSq SINE Alu -16 297 1 611 177 92 46 chr13 24191503 24191633 -77681536 - FRAM SINE Alu -16 160 25 219 315 10 98 chr13 24191928 24192131 -77681038 - L2 LINE L2 -84 3188 3004 2370 80 3 10 chr13 24192146 24192458 -77680711 - AluSx SINE Alu -2 310 1 1995 191 63 14 chr13 24192458 24193274 -77679895 - L1MC4 LINE L1 -743 5403 4969 201 108 0 0 chr13 24193275 24193312 -77679857 + (T)n Simple_repeat Simple_repeat 1 37 0 475 111 0 0 chr13 24193328 24193391 -77679778 - FRAM/FAM SINE Alu -94 82 20 445 210 34 17 chr13 24193935 24194054 -77679115 - MIR SINE MIR 0 262 142 1327 164 0 9 chr13 24194062 24194275 -77678894 - AluJo SINE Alu -16 296 86 465 246 102 0 chr13 24194294 24194412 -77678757 - MIR SINE MIR -120 142 13 261 349 186 37 chr13 24194693 24195048 -77678121 + L2 LINE L2 2855 3262 -10 2407 78 3 0 chr13 24195252 24195547 -77677622 + AluSg SINE Alu 1 296 -14 370 386 43 5 chr13 24195575 24195785 -77677384 + L2 LINE L2 3015 3232 -40 2099 136 0 0 chr13 24196171 24196466 -77676703 - AluSx SINE Alu -17 295 1 1062 178 30 12 chr13 24196495 24196664 -77676505 + FAM SINE Alu 1 172 -3 350 286 150 7 chr13 24196684 24196831 -77676338 + Charlie8 DNA MER1_type 99 266 -2151 2132 120 7 0 chr13 24199696 24199988 -77673181 + AluSx SINE Alu 1 294 -18 234 0 0 0 chr13 24200551 24200577 -77672592 + (TGGA)n Simple_repeat Simple_repeat 3 28 0 518 262 61 0 chr13 24200759 24200923 -77672246 - MIR SINE MIR -87 175 2 1861 112 101 0 chr13 24201110 24201378 -77671791 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr13 24201865 24201886 -77671283 + AT_rich Low_complexity Low_complexity 1 21 0 1926 128 49 23 chr13 24201962 24202266 -77670903 + AluSx SINE Alu 1 312 0 2441 78 0 0 chr13 24202321 24202616 -77670553 - AluY SINE Alu -16 295 1 1307 207 11 11 chr13 24203193 24203454 -77669715 + ERVL LTR ERVL 1345 1605 -4159 1771 136 0 0 chr13 24203454 24203697 -77669472 + AluSx SINE Alu 1 243 -69 5460 171 30 21 chr13 24203698 24204666 -77668503 + ERVL LTR ERVL 1785 2761 -3003 269 244 13 26 chr13 24204713 24204791 -77668378 - MIR SINE MIR -29 233 157 340 274 145 8 chr13 24204889 24205006 -77668163 - MIR SINE MIR -89 173 41 1762 153 10 17 chr13 24206331 24206626 -77666543 + AluJb SINE Alu 1 293 -19 1714 233 149 13 chr13 24206912 24207389 -77665780 - MLT1F LTR MaLR 0 542 1 598 294 87 32 chr13 24207475 24207822 -77665347 + HAL1b LINE L1 293 658 -690 2234 237 70 66 chr13 24208107 24208199 -77664970 + L1MC5 LINE L1 6476 6566 -1395 1987 217 95 29 chr13 24208199 24208450 -77664719 - LTR40a LTR ERVL -4 515 282 1767 153 13 45 chr13 24208450 24208625 -77664544 - AluJo SINE Alu -9 303 141 2318 106 0 6 chr13 24208625 24208937 -77664232 - AluSg SINE Alu 0 310 1 1767 153 13 45 chr13 24208937 24209074 -77664095 - AluJo SINE Alu -171 141 1 1987 217 95 29 chr13 24209074 24209305 -77663864 - LTR40a LTR ERVL -237 282 1 2234 237 70 66 chr13 24209305 24210247 -77662922 + L1MC5 LINE L1 6566 7537 -424 313 252 9 61 chr13 24210320 24210435 -77662734 + L1ME3A LINE L1 5962 6070 -100 1957 147 0 3 chr13 24210532 24210832 -77662337 + AluSg SINE Alu 1 299 -11 285 193 294 0 chr13 24211067 24211176 -77661993 - L1ME4a LINE L1 -2 6119 5979 2223 107 0 7 chr13 24211699 24211997 -77661172 - AluSx SINE Alu -16 296 1 2440 230 81 110 chr13 24212309 24212635 -77660534 - L1MC4 LINE L1 -17 8025 7691 738 186 17 8 chr13 24212635 24212753 -77660416 - FLAM_A SINE Alu -13 120 2 2440 230 81 110 chr13 24212753 24214076 -77659093 - L1MC4 LINE L1 -351 7691 6315 2295 101 0 10 chr13 24214076 24214374 -77658795 + AluSx SINE Alu 1 295 -17 2440 230 81 110 chr13 24214374 24214567 -77658602 - L1MC4 LINE L1 -1727 6315 6118 195 42 0 0 chr13 24214633 24214657 -77658512 + (T)n Simple_repeat Simple_repeat 1 24 0 835 200 50 50 chr13 24214768 24214948 -77658221 + AluJo SINE Alu 121 300 -12 337 286 98 47 chr13 24215177 24215411 -77657758 + L1MC4a LINE L1 6413 6658 -1150 1775 169 0 3 chr13 24215521 24215805 -77657364 - AluJb SINE Alu -29 283 1 1935 131 3 11 chr13 24216328 24216651 -77656518 + AluSg SINE Alu 1 321 0 309 109 0 0 chr13 24216663 24216718 -77656451 + (TG)n Simple_repeat Simple_repeat 2 56 0 754 124 0 18 chr13 24216733 24216846 -77656323 + AluSg/x SINE Alu 199 309 -3 255 93 0 0 chr13 24216869 24216912 -77656257 + (TG)n Simple_repeat Simple_repeat 2 44 0 1372 195 152 14 chr13 24216912 24217321 -77655848 - MLT1C LTR MaLR -3 464 1 415 213 0 0 chr13 24217342 24217417 -77655752 + MER82 DNA MER2_type 2 76 -577 1217 129 0 0 chr13 24217485 24217648 -77655521 + FRAM SINE Alu 1 162 -14 378 288 105 21 chr13 24217681 24217872 -77655297 - MIR SINE MIR -48 214 8 1055 225 5 10 chr13 24217906 24218115 -77655054 + MER82 DNA MER2_type 444 651 -2 1884 165 0 3 chr13 24218262 24218559 -77654610 + AluJo SINE Alu 1 296 -16 26 64 0 0 chr13 24219311 24219358 -77653811 + AT_rich Low_complexity Low_complexity 1 47 0 248 209 29 180 chr13 24219363 24219502 -77653667 - HAL1 LINE L1 -22 2485 2368 538 229 42 0 chr13 24219540 24219684 -77653485 - HAL1 LINE L1 -133 2374 2225 1070 254 158 40 chr13 24219917 24220649 -77652520 - HAL1 LINE L1 -613 1894 845 1527 168 0 96 chr13 24220649 24220982 -77652187 - AluJb SINE Alu -11 301 1 1070 254 158 40 chr13 24220982 24221206 -77651963 - HAL1 LINE L1 -1662 845 649 457 312 64 28 chr13 24221232 24221605 -77651564 - HAL1 LINE L1 -1932 575 156 2223 107 0 10 chr13 24221715 24222014 -77651155 + AluSq SINE Alu 1 296 -17 2392 86 3 0 chr13 24222177 24222479 -77650690 + AluSp SINE Alu 1 303 -10 254 223 115 57 chr13 24222492 24222623 -77650546 - L1ME4a LINE L1 -71 6050 5907 2044 127 0 10 chr13 24222623 24222922 -77650247 - AluSx SINE Alu -16 296 1 254 223 115 57 chr13 24222922 24222947 -77650222 - L1ME4a LINE L1 -214 5907 5885 2141 114 26 26 chr13 24223205 24223546 -77649623 + L1MA5 LINE L1 5959 6299 -1 1832 157 10 16 chr13 24224143 24224456 -77648713 - AluJo SINE Alu -1 311 1 1789 131 65 3 chr13 24225442 24225732 -77647437 - AluSc SINE Alu -1 308 1 1278 106 0 6 chr13 24226910 24227080 -77646089 - AluSc SINE Alu -8 301 133 2135 124 7 0 chr13 24227512 24227811 -77645358 - AluSx SINE Alu -11 301 1 401 194 107 10 chr13 24228032 24228135 -77645034 - MER5B DNA MER1_type -6 172 60 196 327 0 0 chr13 24228217 24228272 -77644897 - MER5A DNA MER1_type -83 106 52 1873 204 135 59 chr13 24229764 24230343 -77642826 - MLT1E3 LTR MaLR -1 623 1 22 0 0 0 chr13 24230453 24230475 -77642694 + AT_rich Low_complexity Low_complexity 1 22 0 2412 70 3 10 chr13 24231283 24231584 -77641585 + AluY SINE Alu 1 299 -12 258 266 46 87 chr13 24231897 24232070 -77641099 + MLT1K LTR MaLR 278 443 -145 2051 118 27 7 chr13 24232394 24232690 -77640479 - AluSx SINE Alu -6 306 5 2295 117 3 0 chr13 24232717 24233024 -77640145 - AluSp SINE Alu -5 308 1 2387 90 0 0 chr13 24233433 24233732 -77639437 - AluSx SINE Alu -13 299 1 1751 137 23 50 chr13 24234317 24234616 -77638553 + AluJb SINE Alu 1 291 -21 343 245 0 101 chr13 24234635 24234794 -77638375 - L1MC4 LINE L1 -63 7979 7837 24 0 0 0 chr13 24235946 24235970 -77637199 + AT_rich Low_complexity Low_complexity 1 24 0 613 189 47 0 chr13 24236072 24236178 -77636991 + FLAM_C SINE Alu 15 125 -18 213 39 0 0 chr13 24236390 24236416 -77636753 + (T)n Simple_repeat Simple_repeat 1 26 0 216 381 36 0 chr13 24236529 24236613 -77636556 - L2 LINE L2 -86 3186 3100 2292 100 6 6 chr13 24236661 24236972 -77636197 + AluSx SINE Alu 1 311 -1 2263 107 0 7 chr13 24237141 24237439 -77635730 - AluSg1 SINE Alu -13 296 1 1865 164 11 0 chr13 24237445 24237732 -77635437 - AluJo SINE Alu -22 290 1 17814 131 95 12 chr13 24237762 24239952 -77633217 + L1MA2 LINE L1 15 2023 -5542 2069 121 0 0 chr13 24239952 24240232 -77632937 + AluSq SINE Alu 1 280 -33 215 61 30 0 chr13 24240232 24240265 -77632904 + (CA)n Simple_repeat Simple_repeat 1 34 0 17814 131 95 12 chr13 24240265 24240860 -77632309 + L1MA2 LINE L1 2023 2567 -4998 2019 135 14 7 chr13 24240860 24241156 -77632013 + AluSp SINE Alu 1 298 -15 17814 131 95 12 chr13 24241156 24241358 -77631811 + L1MA2 LINE L1 2567 3251 -4314 14762 161 15 36 chr13 24241352 24241639 -77631530 + L1MA2 LINE L1 3462 3753 -3971 * 2517 81 7 0 chr13 24241639 24241948 -77631221 + AluY SINE Alu 1 311 0 14762 161 15 36 chr13 24241948 24242146 -77631023 + L1MA2 LINE L1 3753 3954 -3770 931 136 0 0 chr13 24242146 24242278 -77630891 + FLAM_C SINE Alu 1 132 -1 14762 161 15 36 chr13 24242278 24245409 -77627760 + L1MA2 LINE L1 3954 6998 -726 3227 98 64 2 chr13 24245411 24245943 -77627226 + L1MA2 LINE L1 7159 7723 0 461 249 114 72 chr13 24245971 24246304 -77626865 - L1MC4 LINE L1 -75 7967 7621 934 170 114 55 chr13 24246320 24246681 -77626488 - MSTC LTR MaLR -3 425 1 272 226 36 12 chr13 24246702 24246786 -77626383 - L1MC4 LINE L1 -465 7577 7492 1916 176 83 8 chr13 24246842 24247119 -77626050 - MSTA LTR MaLR 0 428 111 2470 78 3 7 chr13 24247119 24247426 -77625743 + AluSp SINE Alu 1 306 -7 1916 176 83 8 chr13 24247426 24247546 -77625623 - MSTA LTR MaLR -317 111 1 309 304 222 24 chr13 24247575 24247679 -77625490 - L1MC4 LINE L1 -547 7495 7413 3386 157 70 11 chr13 24247679 24248303 -77624866 + MER67B LTR ERV1 1 661 0 309 304 222 24 chr13 24248303 24248405 -77624764 - L1MC4 LINE L1 -629 7413 7248 1079 252 77 49 chr13 24248410 24248913 -77624256 + MLT1F1 LTR MaLR 6 527 -40 1746 168 42 3 chr13 24249040 24249325 -77623844 + AluJo SINE Alu 1 296 -16 2297 103 0 10 chr13 24249330 24249631 -77623538 + AluSg SINE Alu 5 302 -8 255 177 165 76 chr13 24249645 24249724 -77623445 - MER5A DNA MER1_type -95 94 9 498 182 15 45 chr13 24250198 24250330 -77622839 + L1ME3A LINE L1 6028 6155 -15 1074 176 0 0 chr13 24250332 24250497 -77622672 - AluJb SINE Alu -13 299 135 22 0 0 0 chr13 24250521 24250543 -77622626 + AT_rich Low_complexity Low_complexity 1 22 0 570 172 0 0 chr13 24250548 24250641 -77622528 + FLAM_A SINE Alu 42 134 -8 1815 88 69 47 chr13 24250645 24250943 -77622226 + AluY SINE Alu 1 304 0 2109 130 25 91 chr13 24251106 24251177 -77621992 - MSTC LTR MaLR 0 428 354 2054 114 24 3 chr13 24251177 24251474 -77621695 + AluSx SINE Alu 1 303 -9 2109 130 25 91 chr13 24251474 24251853 -77621316 - MSTC LTR MaLR -74 354 1 1439 176 34 81 chr13 24252932 24253324 -77619845 - L1ME2 LINE L1 -12 6152 5784 1996 129 40 64 chr13 24253324 24253697 -77619472 + THE1B LTR MaLR 1 364 0 1439 176 34 81 chr13 24253697 24253776 -77619393 - L1ME2 LINE L1 -380 5784 5703 270 210 0 16 chr13 24253947 24254009 -77619160 + MER41B LTR ERV1 274 334 -301 2159 116 3 0 chr13 24254100 24254393 -77618776 - AluSx SINE Alu -18 294 1 984 265 57 0 chr13 24254620 24254899 -77618270 - L1ME2 LINE L1 -452 5712 5418 890 219 42 50 chr13 24254910 24255098 -77618071 - L1ME2 LINE L1 -904 5242 5057 2507 87 0 0 chr13 24255098 24255409 -77617760 - AluY SINE Alu 0 311 1 890 219 42 50 chr13 24255409 24255599 -77617570 - L1ME2 LINE L1 -1089 5057 4867 637 188 86 0 chr13 24255611 24255739 -77617430 - MER3 DNA MER1_type -68 141 3 855 138 209 9 chr13 24255854 24256064 -77617105 + L1MB3 LINE L1 5920 6171 -12 1421 201 46 26 chr13 24256100 24256404 -77616765 + AluJo SINE Alu 2 311 -1 2892 76 19 0 chr13 24256775 24257145 -77616024 - MER51B LTR ERV1 0 377 1 685 79 0 20 chr13 24257888 24257989 -77615180 + AluJ/FLAM SINE Alu 1 99 -213 213 39 0 0 chr13 24259430 24259456 -77613713 + (CAG)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr13 24261167 24261195 -77611974 + (A)n Simple_repeat Simple_repeat 1 28 0 283 266 125 0 chr13 24262858 24262922 -77610247 - MIR SINE MIR -102 106 35 2539 58 0 10 chr13 24263514 24263824 -77609345 + AluSc SINE Alu 3 309 0 913 104 0 0 chr13 24264971 24265086 -77608083 - AluSg SINE Alu -195 115 1 1001 234 137 15 chr13 24265363 24265700 -77607469 - MLT1J LTR MaLR -133 378 1 395 341 72 47 chr13 24266036 24266397 -77606772 - L2 LINE L2 -401 2913 2544 401 293 106 35 chr13 24266724 24266922 -77606247 - MLT1J LTR MaLR -249 262 51 21 36 0 0 chr13 24266928 24266956 -77606213 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 24267844 24267865 -77605304 + AT_rich Low_complexity Low_complexity 1 21 0 610 129 0 20 chr13 24267969 24268070 -77605099 - AluJb SINE Alu -9 303 205 212 398 11 11 chr13 24268091 24268179 -77604990 - MIR SINE MIR -87 121 34 997 122 0 0 chr13 24268267 24268398 -77604771 - AluJb SINE Alu -179 133 3 201 187 0 53 chr13 24268627 24268702 -77604467 + T-rich Low_complexity Low_complexity 2 72 0 38 0 0 0 chr13 24268742 24268780 -77604389 + AT_rich Low_complexity Low_complexity 1 38 0 1871 112 4 4 chr13 24269190 24269450 -77603719 + AluSx SINE Alu 39 298 -14 1673 155 24 34 chr13 24269831 24270122 -77603047 + AluJo SINE Alu 1 288 -24 249 83 0 0 chr13 24270122 24270158 -77603011 + (TA)n Simple_repeat Simple_repeat 2 37 0 2067 170 57 48 chr13 24270702 24270995 -77602174 - L1MD2 LINE L1 -23 6336 6047 2489 80 3 3 chr13 24270995 24271306 -77601863 - AluSp SINE Alu -2 311 1 2067 170 57 48 chr13 24271306 24271415 -77601754 - L1MD2 LINE L1 -312 6047 5941 1707 162 42 21 chr13 24271415 24271699 -77601470 + AluJo SINE Alu 5 294 -18 2067 170 57 48 chr13 24271699 24271800 -77601369 - L1MD2 LINE L1 -418 5941 5827 1322 245 30 53 chr13 24271807 24272276 -77600893 + L1M4 LINE L1 15 472 -6070 3892 156 23 76 chr13 24272290 24272653 -77600516 + L1MB7 LINE L1 5137 5518 -666 492 196 0 28 chr13 24272653 24272760 -77600409 + U13 snRNA snRNA 1 104 0 3892 156 23 76 chr13 24272760 24273510 -77599659 + L1MB7 LINE L1 5518 6184 0 673 108 14 72 chr13 24273512 24273651 -77599518 - L1MD1 LINE L1 -414 5828 5698 2000 98 0 29 chr13 24273669 24273944 -77599225 - AluSx SINE Alu -45 267 1 353 237 154 58 chr13 24274274 24274430 -77598739 + L2 LINE L2 3143 3313 0 2213 104 0 0 chr13 24275204 24275491 -77597678 + AluSg1 SINE Alu 1 287 -22 796 169 0 0 chr13 24275800 24275918 -77597251 + FLAM_A SINE Alu 4 121 -12 6713 109 28 19 chr13 24276363 24277424 -77595745 + MER11C LTR ERVK 1 1071 0 22 35 0 0 chr13 24277469 24277498 -77595671 + AT_rich Low_complexity Low_complexity 1 29 0 1699 202 0 0 chr13 24277924 24278221 -77594948 + AluJo SINE Alu 1 297 -15 2289 103 3 0 chr13 24278362 24278664 -77594505 - AluSp SINE Alu -10 303 1 2476 207 60 78 chr13 24279281 24279571 -77593598 + L1M4 LINE L1 1130 1423 -5221 1043 187 6 0 chr13 24279571 24279737 -77593432 + FAM SINE Alu 1 167 -8 2476 207 60 78 chr13 24279737 24280111 -77593058 + L1M4 LINE L1 1423 1802 -4842 2465 71 0 7 chr13 24280111 24280419 -77592750 + AluY SINE Alu 2 307 -4 2476 207 60 78 chr13 24280419 24280579 -77592590 + L1M4 LINE L1 1802 1963 -4681 1498 200 0 23 chr13 24280579 24280879 -77592290 - AluJo SINE Alu -19 293 1 2476 207 60 78 chr13 24280879 24281209 -77591960 + L1M4 LINE L1 1963 2266 -4378 2113 116 3 7 chr13 24281209 24281501 -77591668 + AluSq SINE Alu 1 291 -22 2325 88 0 10 chr13 24282158 24282486 -77590683 + AluSg SINE Alu 5 310 0 2908 244 55 35 chr13 24282496 24283215 -77589954 + L1M4 LINE L1 2877 3580 -3064 1690 151 45 20 chr13 24283215 24283507 -77589662 + AluJo SINE Alu 1 299 -13 2908 244 55 35 chr13 24283507 24283592 -77589577 + L1M4 LINE L1 3580 3662 -2982 2563 71 0 0 chr13 24283592 24283903 -77589266 - AluY SINE Alu 0 311 1 2908 244 55 35 chr13 24283903 24284485 -77588684 + L1M4 LINE L1 3662 4292 -2352 1480 191 60 12 chr13 24284494 24284830 -77588339 - MLT1A1 LTR MaLR -12 353 2 593 189 61 0 chr13 24284832 24284980 -77588189 + L1M4 LINE L1 4290 4446 -2198 2393 109 0 0 chr13 24285004 24285316 -77587853 + AluSx SINE Alu 1 312 0 1825 110 0 0 chr13 24285360 24285606 -77587563 - AluSg SINE Alu -64 246 1 1772 167 0 7 chr13 24285627 24285914 -77587255 - AluJo SINE Alu -14 298 14 2487 224 62 46 chr13 24285928 24287273 -77585896 + L1MB5 LINE L1 1966 3337 -3045 3118 152 21 36 chr13 24287287 24288284 -77584885 + L1MB5 LINE L1 5125 6102 -308 293 175 0 0 chr13 24288277 24288340 -77584829 + L1MB5 LINE L1 6340 6402 -8 * 521 172 10 0 chr13 24288361 24288460 -77584709 - LTR47A LTR ERVL -2 450 351 285 29 0 0 chr13 24288461 24288495 -77584674 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 238 135 0 0 chr13 24288495 24288522 -77584647 + (TTCTCC)n Simple_repeat Simple_repeat 6 35 -7 2300 110 0 0 chr13 24288522 24288831 -77584338 - AluSc SINE Alu 0 309 1 238 135 0 0 chr13 24288831 24288840 -77584329 + (TTCTCC)n Simple_repeat Simple_repeat 34 42 0 356 207 0 11 chr13 24288852 24288939 -77584230 + CT-rich Low_complexity Low_complexity 4 89 0 1588 192 16 19 chr13 24288946 24289253 -77583916 - AluJo SINE Alu -5 307 2 1363 185 119 3 chr13 24289253 24289572 -77583597 - LTR47A LTR ERVL -96 356 1 7514 191 59 37 chr13 24289574 24291791 -77581378 - MER21-int LTR ERV1 -632 6009 3841 2283 93 3 3 chr13 24291791 24292092 -77581077 - AluSg SINE Alu -7 303 3 7514 191 59 37 chr13 24292092 24292315 -77580854 - MER21-int LTR ERV1 -2800 3841 3624 3526 48 0 70 chr13 24292315 24292797 -77580372 - LTR7 LTR ERV1 -2 448 1 7514 191 59 37 chr13 24292797 24293473 -77579696 - MER21-int LTR ERV1 -3017 3624 552 629 178 15 86 chr13 24293473 24293670 -77579499 + MER4A LTR ERV1 3 185 -479 1378 168 20 72 chr13 24293728 24294135 -77579034 + MER83B-int LTR ERV1 355 2538 -4880 * 1551 237 67 94 chr13 24294132 24294598 -77578571 + MER83B-int LTR ERV1 768 1245 -4901 182 62 31 0 chr13 24294598 24294630 -77578539 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1551 237 67 94 chr13 24294630 24294692 -77578477 + MER83B-int LTR ERV1 1245 1307 -4839 378 0 0 0 chr13 24294692 24294734 -77578435 + (CA)n Simple_repeat Simple_repeat 2 43 0 1551 237 67 94 chr13 24294734 24295613 -77577556 + MER83B-int LTR ERV1 1307 2634 -3512 325 243 32 57 chr13 24295650 24295857 -77577312 + MER34C LTR ERV1 155 402 -183 1404 154 36 128 chr13 24295867 24296384 -77576785 + MER83B-int LTR ERV1 1833 3729 -3808 680 182 86 61 chr13 24296404 24296602 -77576567 + MER83B-int LTR ERV1 2719 2921 -1959 6692 139 18 68 chr13 24296605 24296719 -77576450 + MER83B-int LTR ERV1 4239 4357 -3763 2334 96 7 0 chr13 24296719 24297021 -77576148 + AluSp SINE Alu 1 304 -9 6692 139 18 68 chr13 24297021 24297264 -77575905 + MER83B-int LTR ERV1 4357 4611 -3509 2421 91 0 7 chr13 24297264 24297572 -77575597 - AluSg SINE Alu -4 306 1 6692 139 18 68 chr13 24297572 24298034 -77575135 + MER83B-int LTR ERV1 4611 4971 -3149 1838 173 17 0 chr13 24298034 24298335 -77574834 + AluSx SINE Alu 1 306 -6 6692 139 18 68 chr13 24298335 24298821 -77574348 + MER83B-int LTR ERV1 4971 5480 -2640 917 169 33 11 chr13 24298855 24299038 -77574131 + MER4C LTR ERV1 279 465 0 1663 165 45 37 chr13 24299038 24299429 -77573740 - MER83B-int LTR ERV1 -1977 2903 2790 1091 181 0 11 chr13 24299442 24299624 -77573545 - AluJb SINE Alu 0 312 133 701 121 71 37 chr13 24299624 24299805 -77573364 - MER83B-int LTR ERV1 -2777 3554 2779 752 203 96 137 chr13 24300085 24300585 -77572584 + LTR8 LTR ERV1 246 691 0 326 167 0 0 chr13 24300585 24300645 -77572524 - MER83B-int LTR ERV1 -3901 3636 3577 1223 150 169 52 chr13 24300648 24301170 -77571999 - LTR29 LTR ERV1 -6 616 1 604 179 79 62 chr13 24301178 24301394 -77571775 - MER83B-int LTR ERV1 -4012 2746 1956 271 179 0 18 chr13 24301422 24301478 -77571691 - MER83B-int LTR ERV1 -3888 1235 1181 551 151 0 5 chr13 24301504 24301600 -77571569 - MER83B-int LTR ERV1 -3220 2726 2646 1476 248 43 43 chr13 24301601 24302024 -77571145 - MER83B-int LTR ERV1 -4058 2273 1851 344 210 51 65 chr13 24301999 24302137 -77571032 - MER83B-int LTR ERV1 -2594 2286 2151 * 527 190 133 62 chr13 24302227 24302434 -77570735 + MER61E LTR ERV1 1 223 -484 328 141 141 0 chr13 24302427 24302491 -77570678 + MER51A LTR ERV1 208 280 -354 * 1351 166 36 23 chr13 24302461 24302762 -77570407 + LTR25 LTR ERV1 480 784 -10 2679 181 4 9 chr13 24303059 24303513 -77569656 - LTR47A LTR ERVL 0 452 1 597 232 6 65 chr13 24303544 24303712 -77569457 + L1MC/D LINE L1 3952 4109 -2037 520 195 0 0 chr13 24303716 24303798 -77569371 - AluJ SINE Alu -18 294 213 1090 209 20 62 chr13 24303798 24304090 -77569079 - LTR4 LTR ERV1 0 596 317 698 247 52 108 chr13 24304176 24304545 -77568624 - LTR4 LTR ERV1 -239 357 10 705 156 0 70 chr13 24304555 24304683 -77568486 - AluJo SINE Alu -92 220 102 3964 214 61 32 chr13 24304684 24304928 -77568241 + L1MC/D LINE L1 4112 4348 -2011 3336 125 34 43 chr13 24304928 24305434 -77567735 - LTR26B LTR ERV1 0 531 29 2327 95 0 0 chr13 24305434 24305729 -77567440 + AluSg SINE Alu 1 295 -15 3336 125 34 43 chr13 24305729 24305758 -77567411 - LTR26B LTR ERV1 -502 29 1 3964 214 61 32 chr13 24305758 24306689 -77566480 + L1MC/D LINE L1 4348 5251 -1108 2465 139 15 105 chr13 24306689 24307164 -77566005 - MER61C LTR ERV1 0 434 3 3964 214 61 32 chr13 24307164 24307540 -77565629 + L1MC/D LINE L1 5251 5703 -656 1746 135 79 0 chr13 24307540 24307806 -77565363 - AluSx SINE Alu -25 287 1 3964 214 61 32 chr13 24307806 24307867 -77565302 + L1MC/D LINE L1 5703 5761 -598 2296 101 0 3 chr13 24308279 24308576 -77564593 + AluSq SINE Alu 1 296 -17 27 29 0 0 chr13 24308606 24308640 -77564529 + AT_rich Low_complexity Low_complexity 1 34 0 220 146 57 32 chr13 24308677 24308800 -77564369 + (TTATA)n Simple_repeat Simple_repeat 5 130 0 2392 93 0 0 chr13 24309685 24309987 -77563182 + AluSq SINE Alu 1 302 -11 494 204 254 7 chr13 24310281 24310423 -77562746 - MER5A DNA MER1_type 0 189 13 26 50 0 0 chr13 24310705 24310745 -77562424 + AT_rich Low_complexity Low_complexity 1 40 0 2858 145 9 2 chr13 24311127 24311548 -77561621 + MSTB LTR MaLR 1 424 -2 281 322 87 0 chr13 24312283 24312398 -77560771 - MIR SINE MIR -13 249 125 28 48 0 0 chr13 24312431 24312473 -77560696 + AT_rich Low_complexity Low_complexity 1 42 0 2921 221 46 68 chr13 24312511 24313693 -77559476 - L1ME2 LINE L1 -10 6154 5008 3208 138 35 57 chr13 24313699 24313983 -77559186 - MER21A LTR ERV1 -2 929 661 2022 110 3 30 chr13 24313983 24314284 -77558885 - AluSx SINE Alu -19 293 1 3208 138 35 57 chr13 24314284 24314565 -77558604 - MER21A LTR ERV1 -270 661 376 1668 140 11 15 chr13 24314570 24314835 -77558334 - MER21A LTR ERV1 -667 264 1 1885 214 20 63 chr13 24314911 24315416 -77557753 - MER92C LTR ERV1 -15 539 57 618 323 46 39 chr13 24315584 24315664 -77557505 - MER92C-int LTR ERV1 -177 6624 6546 2866 115 4 80 chr13 24315664 24316125 -77557044 - MSTB LTR MaLR 0 426 1 618 323 46 39 chr13 24316125 24316475 -77556694 - MER92C-int LTR ERV1 -255 6546 6191 1367 197 61 0 chr13 24317409 24317688 -77555481 - MER89-int LTR ERV1 -3903 1033 738 2273 80 0 42 chr13 24317914 24318226 -77554943 + AluSq SINE Alu 1 299 -14 443 277 66 59 chr13 24318379 24318805 -77554364 - MER89-int LTR ERV1 -3069 3732 3304 189 0 0 0 chr13 24319206 24319227 -77553942 + (A)n Simple_repeat Simple_repeat 1 21 0 578 193 67 0 chr13 24319227 24319346 -77553823 + L1MC2 LINE L1 6181 6307 -37 240 258 157 0 chr13 24319576 24319665 -77553504 - MIR SINE MIR -51 211 109 213 39 0 0 chr13 24321176 24321202 -77551967 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2445 81 10 0 chr13 24322776 24323085 -77550084 + AluSx SINE Alu 1 312 0 1289 157 15 114 chr13 24323783 24324107 -77549062 + AluJo SINE Alu 2 293 -19 1869 145 103 16 chr13 24325241 24325551 -77547618 + MER1B DNA MER1_type 1 337 0 1144 188 99 50 chr13 24326115 24326145 -77547024 - AluJo SINE Alu -16 296 269 2658 81 27 48 chr13 24326145 24326298 -77546871 - THE1B LTR MaLR 0 364 209 2009 127 13 10 chr13 24326298 24326598 -77546571 + AluSx SINE Alu 1 301 -11 2658 81 27 48 chr13 24326598 24326816 -77546353 - THE1B LTR MaLR -155 209 1 1144 188 99 50 chr13 24326816 24327067 -77546102 - AluJo SINE Alu -43 269 1 1620 125 0 0 chr13 24327070 24327302 -77545867 - AluSg/x SINE Alu 0 312 81 669 128 0 0 chr13 24327359 24327453 -77545716 - AluJ/FLAM SINE Alu -216 96 3 2310 106 7 0 chr13 24327804 24328106 -77545063 + AluSg SINE Alu 1 304 -6 918 264 75 17 chr13 24328157 24328449 -77544720 + MLT1J LTR MaLR 71 379 -132 308 96 0 58 chr13 24328512 24328564 -77544605 + FLAM_A SINE Alu 85 133 0 1202 115 6 23 chr13 24328565 24328739 -77544430 + AluSx SINE Alu 1 171 -141 2000 112 7 0 chr13 24328816 24329094 -77544075 - AluSq SINE Alu -22 291 12 1003 134 24 18 chr13 24329281 24329445 -77543724 + AluJo SINE Alu 1 165 -147 263 273 118 18 chr13 24329456 24329566 -77543603 + L2 LINE L2 3193 3313 0 29 28 0 0 chr13 24330229 24330265 -77542904 + AT_rich Low_complexity Low_complexity 1 36 0 1403 191 68 25 chr13 24330265 24330543 -77542626 - AluJo SINE Alu -22 290 1 2235 131 10 0 chr13 24330559 24330865 -77542304 - 7SLRNA srpRNA srpRNA -11 309 1 2342 86 0 0 chr13 24331080 24331372 -77541797 + AluSg SINE Alu 1 292 -18 1769 119 20 0 chr13 24332037 24332288 -77540881 + AluSx SINE Alu 1 256 -56 2180 103 0 39 chr13 24332310 24332621 -77540548 - AluSg SINE Alu -11 299 1 941 219 35 62 chr13 24332698 24332958 -77540211 + L1MD3 LINE L1 4698 4950 -1196 2193 116 13 3 chr13 24332964 24333274 -77539895 + AluSq SINE Alu 1 313 0 2279 117 0 7 chr13 24333284 24333592 -77539577 + AluSx SINE Alu 1 306 -6 1714 163 29 80 chr13 24333621 24334071 -77539098 + L1MD3 LINE L1 5332 5803 -377 1935 127 0 17 chr13 24334071 24334363 -77538806 + AluSx SINE Alu 25 311 -1 1714 163 29 80 chr13 24334363 24334467 -77538702 + L1MD3 LINE L1 5803 5911 -269 2695 146 36 5 chr13 24334467 24334905 -77538264 + LTR47A LTR ERVL 1 452 0 1714 163 29 80 chr13 24334905 24335240 -77537929 + L1MD3 LINE L1 5911 6152 -28 692 180 0 9 chr13 24335252 24335363 -77537806 + FLAM_A SINE Alu 23 132 -10 318 23 0 0 chr13 24335385 24335429 -77537740 + L1MB4 LINE L1 6136 6179 -1 1778 153 7 17 chr13 24335537 24335838 -77537331 - AluJb SINE Alu -14 298 1 668 332 94 17 chr13 24335987 24336562 -77536607 + L2 LINE L2 2021 2639 -675 1348 180 30 67 chr13 24336618 24336796 -77536373 + Charlie4a DNA MER1_type 19 181 -1780 1909 132 7 30 chr13 24336796 24337099 -77536070 + AluSx SINE Alu 3 298 -14 1348 180 30 67 chr13 24337099 24337248 -77535921 + Charlie4a DNA MER1_type 181 334 -174 353 75 0 0 chr13 24337244 24337297 -77535872 - AluSp/q SINE Alu 0 303 251 * 370 167 0 15 chr13 24337292 24337358 -77535811 + AluSp/q SINE Alu 229 293 -10 233 294 84 64 chr13 24337402 24337759 -77535410 - L1MCa LINE L1 -1347 5079 4716 2168 103 14 0 chr13 24337781 24338071 -77535098 + AluSg SINE Alu 1 294 -16 182 147 118 0 chr13 24338072 24338106 -77535063 + L2 LINE L2 3201 3238 -75 1622 233 44 50 chr13 24338106 24338625 -77534544 + MER74B LTR ERVL 72 587 -35 1054 281 47 0 chr13 24338651 24338992 -77534177 + L1MC4a LINE L1 5543 5899 -1909 498 270 95 21 chr13 24339001 24339190 -77533979 + MIR SINE MIR 9 211 -51 767 115 0 0 chr13 24339329 24339425 -77533744 - AluSg/x SINE Alu -150 160 65 3005 246 63 12 chr13 24339543 24340506 -77532663 - L1MCa LINE L1 -2592 3834 2823 648 144 245 43 chr13 24340498 24340568 -77532601 - L1MCa LINE L1 -4120 2306 2251 * 2560 47 3 0 chr13 24340568 24340868 -77532301 - AluY SINE Alu -10 301 1 2114 102 14 3 chr13 24340868 24341162 -77532007 - AluSq SINE Alu -16 297 1 648 144 245 43 chr13 24341162 24341377 -77531792 - L1MCa LINE L1 -4174 2252 1933 520 264 0 0 chr13 24341381 24341491 -77531678 + FLAM_A SINE Alu 1 110 -32 951 106 0 0 chr13 24341493 24341616 -77531553 + AluSg/x SINE Alu 163 285 -25 252 0 0 0 chr13 24341616 24341644 -77531525 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2455 74 15 21 chr13 24341646 24341983 -77531186 + L1PB2 LINE L1 5816 6150 -1 1116 137 24 19 chr13 24341993 24342063 -77531106 - L1MCa LINE L1 -4502 1924 1856 2437 86 3 0 chr13 24342063 24342366 -77530803 - AluSg SINE Alu -6 304 1 1116 137 24 19 chr13 24342366 24342463 -77530706 - L1MCa LINE L1 -4570 1856 1753 1535 162 92 4 chr13 24342463 24342734 -77530435 - AluJb SINE Alu -17 295 1 1116 137 24 19 chr13 24342734 24342770 -77530399 - L1MCa LINE L1 -4673 1753 1719 2656 73 0 12 chr13 24342770 24343112 -77530057 - MER4C LTR ERV1 0 465 128 704 89 40 0 chr13 24343112 24343213 -77529956 - AluSc SINE Alu -3 306 202 643 186 0 9 chr13 24343220 24343333 -77529836 - MER4D LTR ERV1 -238 665 554 2542 43 0 13 chr13 24343344 24343645 -77529524 + AluY SINE Alu 1 297 -14 1972 132 103 97 chr13 24343907 24344238 -77528931 + MSTA LTR MaLR 1 328 -100 2285 112 0 6 chr13 24344238 24344551 -77528618 - AluSq SINE Alu -2 311 1 1972 132 103 97 chr13 24344551 24344604 -77528565 + MSTA LTR MaLR 328 391 -37 2195 125 3 0 chr13 24344604 24344900 -77528269 - AluSq SINE Alu -16 297 1 1972 132 103 97 chr13 24344900 24344939 -77528230 + MSTA LTR MaLR 391 428 0 2147 215 103 65 chr13 24345310 24345839 -77527330 + MER50 LTR ERV1 10 517 -217 7968 130 16 24 chr13 24345839 24345959 -77527210 - L1PA11 LINE L1 0 6174 6055 2347 99 0 0 chr13 24345959 24346262 -77526907 - AluSc SINE Alu -6 303 1 7968 130 16 24 chr13 24346262 24346991 -77526178 - L1PA11 LINE L1 -119 6055 5322 2403 79 3 0 chr13 24346991 24347282 -77525887 - AluY SINE Alu -19 292 1 2424 103 3 0 chr13 24347292 24347603 -77525566 - AluSx SINE Alu 0 312 1 7968 130 16 24 chr13 24347603 24348869 -77524300 - L1PA11 LINE L1 -861 5313 4052 2147 215 103 65 chr13 24348869 24349037 -77524132 + MER50 LTR ERV1 517 734 0 1037 147 0 71 chr13 24349786 24349829 -77523340 - AluSx SINE Alu 0 310 266 180 0 0 0 chr13 24349829 24349849 -77523320 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1037 147 0 71 chr13 24349849 24350003 -77523166 - AluSx SINE Alu -44 266 127 305 221 130 0 chr13 24350011 24350088 -77523081 - L1MC4 LINE L1 -1339 6703 6617 2431 70 0 17 chr13 24350088 24350389 -77522780 - AluY SINE Alu -15 296 1 919 118 0 15 chr13 24350390 24350525 -77522644 - AluSx SINE Alu -179 133 1 2511 124 8 0 chr13 24350537 24350908 -77522261 - MER41D LTR ERV1 -183 374 1 1274 185 22 0 chr13 24350909 24351131 -77522038 + AluJo SINE Alu 56 282 -30 194 315 45 0 chr13 24351213 24351302 -77521867 - MIR SINE MIR -118 144 52 683 241 47 16 chr13 24351537 24351728 -77521441 - MIR SINE MIR -60 202 6 713 286 91 33 chr13 24351944 24352308 -77520861 + L1MC4a LINE L1 5464 5848 -1960 1629 161 21 0 chr13 24352386 24352665 -77520504 + MER49 LTR ERV1 1 285 -638 1193 189 6 8 chr13 24352715 24352975 -77520194 + LTR39 LTR ERV1 394 774 -129 466 158 0 0 chr13 24352979 24353055 -77520114 - AluS SINE Alu -229 84 9 343 288 25 34 chr13 24353065 24353183 -77519986 + MER4E LTR ERV1 641 757 -22 885 151 0 0 chr13 24353183 24353309 -77519860 + AluJo SINE Alu 1 126 -186 516 124 29 0 chr13 24353309 24353414 -77519755 + (TA)n Simple_repeat Simple_repeat 1 108 0 2161 120 3 0 chr13 24353432 24353724 -77519445 + AluSg SINE Alu 1 293 -17 401 261 21 63 chr13 24353736 24353878 -77519291 + AluJo SINE Alu 129 264 -48 1748 157 0 4 chr13 24354256 24354530 -77518639 - AluJb SINE Alu -37 275 3 237 204 68 80 chr13 24354677 24354765 -77518404 - MLT2B3 LTR ERVL 0 554 468 387 0 0 0 chr13 24354767 24354810 -77518359 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1976 183 147 5 chr13 24354840 24355277 -77517892 - MLT2B3 LTR ERVL -55 499 1 2175 110 24 0 chr13 24355296 24355586 -77517583 + AluSg SINE Alu 1 297 -13 2195 127 0 10 chr13 24355709 24356016 -77517153 + AluSx SINE Alu 1 304 -8 266 233 100 33 chr13 24356050 24356140 -77517029 - LTR67 LTR ERVL -276 281 186 251 281 0 42 chr13 24356297 24356393 -77516776 - L1MC/D LINE L1 -1936 5872 5781 2048 112 3 43 chr13 24356497 24356820 -77516349 + AluSg SINE Alu 1 310 0 2218 105 24 0 chr13 24356980 24357275 -77515894 + AluSp SINE Alu 1 302 -11 2347 78 7 10 chr13 24357277 24357586 -77515583 + AluY SINE Alu 1 308 -3 6758 128 96 17 chr13 24358046 24359101 -77514068 + MER52C LTR ERV1 1 1162 -116 2162 128 0 0 chr13 24359101 24359407 -77513762 + AluSg SINE Alu 1 306 -4 6758 128 96 17 chr13 24359407 24359535 -77513634 + MER52C LTR ERV1 1162 1278 0 199 262 0 0 chr13 24359682 24359724 -77513445 + L3 LINE CR1 1453 1494 -83 2380 92 0 13 chr13 24359901 24360206 -77512963 + AluSx SINE Alu 2 302 -10 872 205 0 0 chr13 24360250 24360401 -77512768 - Tigger3(Golem) DNA MER2_type 0 3029 2879 283 208 113 0 chr13 24360402 24360455 -77512714 - Tigger3(Golem) DNA MER2_type -2969 60 2 1478 152 97 61 chr13 24360550 24360912 -77512257 + THE1C LTR MaLR 1 375 0 1481 187 0 53 chr13 24360915 24361011 -77512158 + AluJo SINE Alu 1 101 -211 2572 58 0 0 chr13 24361011 24361305 -77511864 + AluSg SINE Alu 1 294 -16 1481 187 0 53 chr13 24361305 24361492 -77511677 + AluJo SINE Alu 101 269 -43 399 296 50 69 chr13 24361559 24361819 -77511350 - L2 LINE L2 -78 3194 2940 279 0 0 0 chr13 24361882 24361913 -77511256 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1382 161 8 56 chr13 24361991 24362096 -77511073 + AluJb SINE Alu 42 151 -161 2336 108 0 0 chr13 24362096 24362392 -77510777 + AluSx SINE Alu 1 296 -16 1382 161 8 56 chr13 24362392 24362553 -77510616 + AluJb SINE Alu 151 295 -17 419 288 22 27 chr13 24362555 24362739 -77510430 - L2 LINE L2 -450 2864 2682 408 240 19 0 chr13 24362768 24362872 -77510297 - Charlie4 DNA MER1_type -16 1945 1840 3276 175 62 40 chr13 24362872 24362960 -77510209 + L1MB8 LINE L1 4360 4445 -1701 1877 159 3 19 chr13 24362960 24363268 -77509901 + AluJo SINE Alu 1 303 -9 3276 175 62 40 chr13 24363268 24363881 -77509288 + L1MB8 LINE L1 4445 5084 -1062 1362 205 37 34 chr13 24363881 24364179 -77508990 + AluJo SINE Alu 1 299 -13 3276 175 62 40 chr13 24364179 24364299 -77508870 + L1MB8 LINE L1 5084 5200 -946 1641 132 92 86 chr13 24364306 24364549 -77508620 - MLT1B LTR MaLR 0 390 143 1649 117 133 0 chr13 24364549 24364813 -77508356 - AluSg SINE Alu -9 301 3 1641 132 92 86 chr13 24364813 24364917 -77508252 - MLT1B LTR MaLR -247 143 41 1760 149 73 89 chr13 24364921 24365322 -77507847 + L1MB8 LINE L1 5745 6140 -38 2576 59 0 3 chr13 24365322 24365626 -77507543 - AluY SINE Alu -8 303 1 1760 149 73 89 chr13 24365626 24365660 -77507509 + L1MB8 LINE L1 6140 6173 -5 288 111 0 0 chr13 24365660 24365714 -77507455 - Charlie4 DNA MER1_type -97 1864 1811 231 91 0 0 chr13 24365720 24365753 -77507416 - Alu SINE Alu -10 291 259 507 127 13 0 chr13 24366114 24366193 -77506976 + L1MB3 LINE L1 6059 6138 -45 852 155 0 0 chr13 24366193 24366322 -77506847 + FLAM_C SINE Alu 1 129 -4 298 98 61 0 chr13 24366322 24366404 -77506765 + (TA)n Simple_repeat Simple_repeat 2 88 0 41 66 0 0 chr13 24366406 24366482 -77506687 + AT_rich Low_complexity Low_complexity 1 76 0 210 231 0 0 chr13 24366482 24366547 -77506622 + (TA)n Simple_repeat Simple_repeat 2 66 0 1645 158 7 58 chr13 24366686 24366996 -77506173 - AluJo SINE Alu -18 294 1 2190 100 3 3 chr13 24367271 24367587 -77505582 - AluSg SINE Alu 0 310 1 858 141 6 24 chr13 24367595 24367765 -77505404 - L1MA6 LINE L1 0 6300 6134 1278 128 27 14 chr13 24468635 24468854 -77404315 + AluSq SINE Alu 1 222 -91 1187 222 225 21 chr13 24468858 24469733 -77403436 - SATR1 Satellite Satellite -96 1053 1 960 219 193 27 chr13 24470916 24471325 -77401844 - SATR1 Satellite Satellite -2 476 1 1150 216 263 33 chr13 24471372 24472220 -77400949 - SATR1 Satellite Satellite -51 1042 1 1194 217 236 41 chr13 24472285 24473507 -77399662 - SATR1 Satellite Satellite -95 1460 1 1087 230 252 28 chr13 24473553 24474883 -77398286 - SATR1 Satellite Satellite -51 1627 1 1290 217 278 7 chr13 24474917 24477666 -77395503 - SATR1 Satellite Satellite -1 3494 1 1120 231 237 39 chr13 24477681 24479289 -77393880 - SATR1 Satellite Satellite -106 1926 1 2079 202 108 9 chr13 24479323 24480659 -77392510 - SATR1 Satellite Satellite -1 1468 1 248 216 5 88 chr13 24480746 24480940 -77392229 + (TTA)n Simple_repeat Simple_repeat 1 178 0 2307 181 105 21 chr13 24481037 24482737 -77390432 - SATR1 Satellite Satellite 0 1841 1 823 172 45 45 chr13 24482884 24483082 -77390087 + LTR2 LTR ERV1 235 432 -17 522 83 0 0 chr13 24483107 24483179 -77389990 - tRNA-Glu-GAG tRNA tRNA -2 73 2 3178 105 14 0 chr13 24483180 24483619 -77389550 + HERVE LTR ERV1 647 1091 -6722 375 210 36 51 chr13 24483620 24483758 -77389411 - L1M LINE L1 -772 5390 5255 1156 80 0 0 chr13 24483763 24483914 -77389255 + AluSp SINE Alu 1 151 -162 22 80 0 0 chr13 24484649 24484699 -77388470 + GC_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr13 24484896 24484938 -77388231 + GC_rich Low_complexity Low_complexity 1 42 0 249 291 142 0 chr13 24485196 24485330 -77387839 + MIR SINE MIR 46 198 -64 198 135 0 54 chr13 24485723 24485760 -77387409 + MIR SINE MIR 117 151 -57 216 67 0 0 chr13 24486346 24486376 -77386793 + (CAA)n Simple_repeat Simple_repeat 1 30 0 324 48 0 0 chr13 24490645 24490687 -77382482 + (TG)n Simple_repeat Simple_repeat 1 42 0 506 261 118 6 chr13 24492639 24492800 -77380369 - MIR3 SINE MIR 0 208 30 218 206 0 16 chr13 24493242 24493305 -77379864 + (CA)n Simple_repeat Simple_repeat 2 63 0 608 176 6 0 chr13 24493316 24493486 -77379683 + (CA)n Simple_repeat Simple_repeat 1 171 0 2037 119 0 7 chr13 24493581 24493874 -77379295 - AluSx SINE Alu -21 291 1 222 37 0 0 chr13 24495921 24495948 -77377221 + (TC)n Simple_repeat Simple_repeat 1 27 0 2179 90 7 4 chr13 24496162 24496441 -77376728 + AluSx SINE Alu 1 280 -32 303 28 0 0 chr13 24496443 24496479 -77376690 + (TAA)n Simple_repeat Simple_repeat 2 37 0 342 0 0 0 chr13 24496479 24496517 -77376652 + (GAA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr13 24498076 24498097 -77375072 + AT_rich Low_complexity Low_complexity 1 21 0 3572 135 86 26 chr13 24498912 24499530 -77373639 - L1MB7 LINE L1 0 6184 5415 2425 66 7 3 chr13 24499530 24499832 -77373337 - AluY SINE Alu -8 303 1 3572 135 86 26 chr13 24499832 24499977 -77373192 - L1MB7 LINE L1 -769 5415 5280 * 7028 118 29 4 chr13 24499965 24501536 -77371633 - L1MA2 LINE L1 0 7723 6115 32535 106 15 51 chr13 24501540 24507917 -77365252 - L1PA7 LINE L1 -4 6150 12 5373 136 26 1 chr13 24507929 24508841 -77364328 - L1MA2 LINE L1 -1434 6131 5197 3858 70 6 6 chr13 24508841 24509340 -77363829 - L1PA7 LINE L1 0 6154 5656 5265 80 0 0 chr13 24509340 24510029 -77363140 + L1P LINE L1 3753 4441 -1705 * 20893 147 39 30 chr13 24510000 24510757 -77362412 - L1MA2 LINE L1 -2330 5235 4486 2455 76 0 3 chr13 24510757 24511060 -77362109 + AluSq SINE Alu 5 306 -7 20893 147 39 30 chr13 24511060 24511997 -77361172 - L1MA2 LINE L1 -3079 4486 3559 2180 123 0 10 chr13 24511997 24512298 -77360871 - AluSq SINE Alu -15 298 1 20893 147 39 30 chr13 24512298 24514127 -77359042 - L1MA2 LINE L1 -4006 3559 1649 198 0 0 0 chr13 24514127 24514149 -77359020 + (TC)n Simple_repeat Simple_repeat 2 23 0 20893 147 39 30 chr13 24514149 24515803 -77357366 - L1MA2 LINE L1 -5916 1649 11 1871 172 7 3 chr13 24515834 24516136 -77357033 - AluJo SINE Alu -9 303 1 4854 192 42 54 chr13 24516137 24516365 -77356804 - L1M4 LINE L1 -858 5288 5059 2450 64 3 0 chr13 24516365 24516660 -77356509 - AluY SINE Alu -15 296 1 4854 192 42 54 chr13 24516660 24517070 -77356099 - L1M4 LINE L1 -1087 5059 4646 750 163 0 22 chr13 24517070 24517205 -77355964 - FLAM_C SINE Alu -1 132 1 4854 192 42 54 chr13 24517205 24517851 -77355318 - L1M4 LINE L1 -1500 4646 4018 225 0 0 0 chr13 24518196 24518221 -77354948 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 387 0 0 0 chr13 24518220 24518263 -77354906 + (TG)n Simple_repeat Simple_repeat 1 43 0 279 208 13 52 chr13 24518452 24518529 -77354640 - MER103 DNA DNA -8 158 85 1029 262 80 17 chr13 24518555 24518941 -77354228 - MLT1J LTR MaLR -34 477 1 265 186 0 0 chr13 24518941 24518983 -77354186 - MER103 DNA DNA -74 92 51 582 244 45 24 chr13 24519592 24519797 -77353372 + MIR SINE MIR 11 229 -33 188 242 200 11 chr13 24519962 24520057 -77353112 + MIR SINE MIR 19 131 -77 571 269 55 79 chr13 24520474 24520847 -77352322 + L2 LINE L2 2910 3270 -2 276 154 0 0 chr13 24521299 24521351 -77351818 + (TG)n Simple_repeat Simple_repeat 1 52 0 215 208 14 83 chr13 24522093 24522165 -77351004 - MIR3 SINE MIR -41 167 101 224 281 56 11 chr13 24523013 24523102 -77350067 + L3b LINE CR1 1151 1243 -340 1681 171 14 10 chr13 24523123 24523415 -77349754 + AluJo SINE Alu 1 293 -19 286 189 245 0 chr13 24524142 24524248 -77348921 - MIR SINE MIR -70 192 61 217 254 104 0 chr13 24525043 24525110 -77348059 + MIR SINE MIR 54 127 -135 432 0 0 0 chr13 24525303 24525351 -77347818 + (CA)n Simple_repeat Simple_repeat 2 49 0 291 245 71 20 chr13 24525356 24525454 -77347715 - L1ME3 LINE L1 -95 6067 5965 203 308 11 33 chr13 24525737 24525828 -77347341 + L2 LINE L2 3141 3229 -43 692 223 0 0 chr13 24525935 24526065 -77347104 + FLAM_C SINE Alu 2 131 -2 24 0 0 0 chr13 24526224 24526248 -77346921 + AT_rich Low_complexity Low_complexity 1 24 0 2635 197 7 45 chr13 24526903 24526986 -77346183 - L1MB7 LINE L1 -1 6183 6098 1874 146 3 14 chr13 24526986 24527281 -77345888 + AluJb SINE Alu 1 292 -20 2635 197 7 45 chr13 24527281 24527791 -77345378 - L1MB7 LINE L1 -86 6098 5613 208 242 154 0 chr13 24528024 24528115 -77345054 - L2 LINE L2 -63 3250 3146 727 285 91 30 chr13 24528197 24528565 -77344604 + MLT1J2 LTR MaLR 71 440 -10 1804 160 3 30 chr13 24528736 24529036 -77344133 + AluJb SINE Alu 1 292 -20 844 128 0 0 chr13 24530356 24530473 -77342696 - FRAM SINE Alu -20 156 40 690 252 70 21 chr13 24530476 24530718 -77342451 - MIR SINE MIR -1 261 8 204 158 0 0 chr13 24530875 24530913 -77342256 + GA-rich Low_complexity Low_complexity 3 40 0 2719 107 3 3 chr13 24531160 24531524 -77341645 - THE1B LTR MaLR 0 364 1 3956 98 24 5 chr13 24531788 24532368 -77340801 + L1PB1 LINE L1 5561 6151 0 539 289 90 61 chr13 24532462 24532907 -77340262 + MLT1H LTR MaLR 1 547 -2 376 244 130 0 chr13 24533360 24533475 -77339694 - L1ME4a LINE L1 0 6121 5992 408 305 30 30 chr13 24533504 24533718 -77339451 - L1ME4a LINE L1 -226 5895 5679 1697 183 10 16 chr13 24533718 24534024 -77339145 - AluJb SINE Alu -8 304 1 408 305 30 30 chr13 24534024 24534071 -77339098 - L1ME4a LINE L1 -441 5680 5634 315 0 0 0 chr13 24534080 24534115 -77339054 + (CA)n Simple_repeat Simple_repeat 2 36 0 2351 110 19 45 chr13 24534125 24534499 -77338670 - THE1B LTR MaLR 0 364 1 7103 89 4 1 chr13 24534499 24535417 -77337752 - THE1B-int LTR MaLR 0 1580 660 3088 76 21 7 chr13 24535413 24535835 -77337334 - THE1B-int LTR MaLR -1152 428 1 * 605 116 0 12 chr13 24535835 24535921 -77337248 - THE1B LTR MaLR 0 375 291 277 226 45 11 chr13 24535964 24536052 -77337117 + L1ME LINE L1 5513 5612 -509 442 123 235 0 chr13 24536056 24536137 -77337032 + AluJ/FLAM SINE Alu 2 101 -211 3528 151 50 18 chr13 24537263 24537867 -77335302 - MER21B LTR ERV1 -113 750 128 343 238 42 35 chr13 24537869 24538012 -77335157 + L1MEc LINE L1 356 499 -5897 729 176 58 5 chr13 24538013 24538233 -77334936 + L1M4 LINE L1 4897 5182 -964 2171 147 97 1 chr13 24538311 24538815 -77334354 - L1ME4a LINE L1 -666 5518 4964 428 234 73 8 chr13 24538821 24538945 -77334224 + L1MA10 LINE L1 6201 6332 -2 29 90 0 0 chr13 24539172 24539250 -77333919 + AT_rich Low_complexity Low_complexity 1 78 0 831 186 13 46 chr13 24540091 24540410 -77332759 - MLT1A1 LTR MaLR -2 372 15 399 267 184 23 chr13 24540413 24540679 -77332490 - L2 LINE L2 -23 3249 2941 339 259 35 0 chr13 24541234 24541319 -77331850 - MIR SINE MIR -81 127 40 492 257 29 12 chr13 24541393 24541564 -77331605 - L2 LINE L2 -31 3282 3109 1544 136 55 0 chr13 24542146 24542382 -77330787 - AluSx SINE Alu -8 304 56 784 159 166 18 chr13 24542387 24542550 -77330619 - MER21B LTR ERV1 -113 750 564 562 90 0 0 chr13 24542557 24542635 -77330534 - AluSx SINE Alu -233 79 2 333 194 15 0 chr13 24543339 24543406 -77329763 + MIR SINE MIR 80 147 -115 301 278 19 9 chr13 24543699 24543807 -77329362 - MER103 DNA DNA -12 154 46 1278 171 22 44 chr13 24544027 24544301 -77328868 - L1MD3 LINE L1 0 7995 7728 847 250 107 93 chr13 24545041 24545545 -77327624 + MLT1L LTR MaLR 22 532 -83 1123 194 89 5 chr13 24545684 24546055 -77327114 - MLT1D LTR MaLR 0 505 3 186 133 0 0 chr13 24546248 24546278 -77326891 + (GA)n Simple_repeat Simple_repeat 1 30 0 413 268 36 0 chr13 24548456 24548594 -77324575 - LTR67 LTR ERVL -2 555 413 860 115 94 120 chr13 24549158 24549327 -77323842 - L1MA9 LINE L1 0 6312 6149 342 0 0 0 chr13 24549327 24549365 -77323804 + (TG)n Simple_repeat Simple_repeat 1 38 0 860 115 94 120 chr13 24549365 24549429 -77323740 - L1MA9 LINE L1 -163 6149 6085 2209 112 10 0 chr13 24549642 24549938 -77323231 + AluSx SINE Alu 1 299 -13 197 154 0 28 chr13 24550450 24550491 -77322678 - MIR SINE MIR -139 69 29 202 350 89 0 chr13 24550740 24550863 -77322306 + MIR SINE MIR 49 182 -80 691 99 124 25 chr13 24551742 24551863 -77321306 + THE1C LTR MaLR 194 326 -49 693 229 0 14 chr13 24551892 24552032 -77321137 + FLAM_A SINE Alu 2 139 -3 864 330 73 14 chr13 24552124 24552643 -77320526 + L2 LINE L2 1745 2294 -1020 744 211 0 0 chr13 24552674 24552807 -77320362 + FLAM_A SINE Alu 1 133 0 323 221 18 62 chr13 24552837 24552950 -77320219 - L1MC4 LINE L1 -17 8025 7918 203 186 51 17 chr13 24552965 24553024 -77320145 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 782 191 54 170 chr13 24553025 24553234 -77319935 - L1MC4 LINE L1 -124 7918 7686 447 143 0 0 chr13 24553234 24553311 -77319858 - L1PB1 LINE L1 -1 6150 6074 782 191 54 170 chr13 24553311 24553537 -77319632 - L1MC4 LINE L1 -356 7686 7450 494 318 13 0 chr13 24553542 24553693 -77319476 - MIR SINE MIR -76 186 34 1332 248 30 73 chr13 24553788 24554348 -77318821 - L1MC4 LINE L1 -469 7573 7038 616 266 14 28 chr13 24554397 24554615 -77318554 + L2 LINE L2 2303 2517 -797 595 239 14 7 chr13 24554689 24554831 -77318338 + MER5B DNA MER1_type 2 144 -34 1349 196 109 16 chr13 24555358 24555735 -77317434 + MER66A LTR ERV1 27 438 -40 637 323 109 37 chr13 24556149 24557326 -77315843 + L1MC4a LINE L1 3683 4957 -1189 1630 179 18 72 chr13 24557326 24557712 -77315457 + MLT1A1 LTR MaLR 1 365 0 637 323 109 37 chr13 24557712 24557796 -77315373 + L1MC4a LINE L1 4957 5034 -1112 1043 264 138 24 chr13 24558016 24558558 -77314611 + L1MC4a LINE L1 5264 5867 -1941 517 291 63 44 chr13 24558794 24558882 -77314287 + L1M4 LINE L1 4741 4826 -1320 2162 144 5 57 chr13 24558882 24559265 -77313904 - MLT1A1 LTR MaLR 0 365 3 517 291 63 44 chr13 24559265 24559540 -77313629 + L1M4 LINE L1 4826 5111 -1035 670 184 40 0 chr13 24559563 24559688 -77313481 + FLAM_A SINE Alu 1 130 -3 896 61 0 0 chr13 24559905 24560019 -77313150 - L1PA5 LINE L1 -2 6152 6039 768 173 0 29 chr13 24560069 24560208 -77312961 - AluJo SINE Alu -175 137 3 281 318 10 42 chr13 24560212 24560404 -77312765 + HAL1 LINE L1 1278 1463 -1044 2071 122 3 0 chr13 24561475 24561762 -77311407 - AluSg SINE Alu -22 288 1 45556 33 4 1 chr13 24561935 24568052 -77305117 - L1PA4 LINE L1 -3 6152 12 1810 244 35 39 chr13 24568475 24568995 -77304174 + MER97c DNA MER1_type? 1 518 -572 283 270 144 47 chr13 24569092 24569307 -77303862 + MER97c DNA MER1_type? 824 1059 -31 245 250 0 0 chr13 24570010 24570062 -77303107 + LTR30 LTR ERV1 1 52 -670 2328 81 169 157 chr13 24570062 24570655 -77302514 + LTR12 LTR ERV1 57 581 -133 907 219 0 0 chr13 24570795 24570959 -77302210 - FAM SINE Alu -16 169 6 1303 257 82 21 chr13 24570969 24571393 -77301776 + MER74B LTR ERVL 91 540 -82 249 250 68 0 chr13 24571324 24571412 -77301757 - MER88 LTR ERVL -291 173 80 * 396 0 0 0 chr13 24571913 24571957 -77301212 + (CA)n Simple_repeat Simple_repeat 2 45 0 761 346 38 3 chr13 24571972 24572319 -77300850 + MER115 DNA AcHobo 3 361 -332 240 35 0 0 chr13 24574003 24574032 -77299137 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr13 24575971 24575993 -77297176 + AT_rich Low_complexity Low_complexity 1 22 0 808 241 72 14 chr13 24576210 24576417 -77296752 + MER20 DNA MER1_type 1 219 0 354 249 137 29 chr13 24577117 24577322 -77295847 + L1MC5 LINE L1 7701 7927 -34 575 254 103 82 chr13 24578077 24578570 -77294599 - MLT1H LTR MaLR -4 545 1 410 243 196 0 chr13 24579992 24580140 -77293029 - MER5B DNA MER1_type -1 177 1 1786 279 71 1 chr13 24580500 24581167 -77292002 + L2 LINE L2 2396 3145 -168 2033 137 0 10 chr13 24581167 24581466 -77291703 - AluJb SINE Alu -6 306 11 1786 279 71 1 chr13 24581466 24581648 -77291521 + L2 LINE L2 3145 3313 0 182 294 119 24 chr13 24582459 24582585 -77290584 - MIR SINE MIR -19 243 106 1157 209 0 5 chr13 24582595 24582810 -77290359 + L1MB7 LINE L1 1 214 -6328 * 5606 174 48 13 chr13 24582807 24583930 -77289239 + L1MB7 LINE L1 4761 5976 -706 2075 137 7 0 chr13 24583930 24584223 -77288946 + AluSx SINE Alu 1 295 -17 5606 174 48 13 chr13 24584223 24584938 -77288231 + L1MB7 LINE L1 5976 6664 -18 21 36 0 0 chr13 24584939 24584967 -77288202 + AT_rich Low_complexity Low_complexity 1 28 0 401 198 10 0 chr13 24585498 24585599 -77287570 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 1775 208 14 14 chr13 24586970 24587335 -77285834 - MLT1A1 LTR MaLR 0 365 1 430 223 37 15 chr13 24587425 24587579 -77285590 - MLT1I LTR MaLR -206 203 46 416 242 33 0 chr13 24587838 24587958 -77285211 + MIR SINE MIR 136 259 -3 24 53 0 0 chr13 24587960 24587998 -77285171 + AT_rich Low_complexity Low_complexity 1 38 0 907 160 0 13 chr13 24588142 24588292 -77284877 - AluJo SINE Alu -161 151 4 354 23 0 0 chr13 24590973 24591016 -77282153 + (CA)n Simple_repeat Simple_repeat 2 44 0 205 214 125 0 chr13 24591484 24591540 -77281629 - MIR SINE MIR -85 123 61 1938 166 0 22 chr13 24591678 24591997 -77281172 + AluJb SINE Alu 1 312 0 359 244 17 26 chr13 24593555 24593670 -77279499 + MIR SINE MIR 46 159 -103 478 278 29 17 chr13 24593702 24593875 -77279294 + MIR SINE MIR 88 262 0 200 216 0 0 chr13 24595945 24595982 -77277187 + CT-rich Low_complexity Low_complexity 3 39 0 263 323 16 8 chr13 24597132 24597256 -77275913 + (TA)n Simple_repeat Simple_repeat 2 126 0 34 24 0 0 chr13 24597419 24597460 -77275709 + AT_rich Low_complexity Low_complexity 1 41 0 186 232 0 54 chr13 24597485 24597541 -77275628 + L2 LINE L2 3180 3232 -81 234 143 0 0 chr13 24598416 24598451 -77274718 + L1P LINE L1 4204 4238 -1908 615 9 0 73 chr13 24598451 24598561 -77274608 + (TCTCCC)n Simple_repeat Simple_repeat 4 105 0 6832 76 13 8 chr13 24598581 24599998 -77273171 + SVA Other Other 78 1386 0 2056 138 0 3 chr13 24600011 24600315 -77272854 + AluSg SINE Alu 1 303 -7 1757 144 27 33 chr13 24600317 24600616 -77272553 + AluSx SINE Alu 1 297 -15 286 100 0 0 chr13 24600616 24600656 -77272513 + L1MA2 LINE L1 6069 6108 -196 529 174 15 0 chr13 24600670 24600802 -77272367 + (TA)n Simple_repeat Simple_repeat 2 135 0 1645 138 0 21 chr13 24600816 24601105 -77272064 - AluSx SINE Alu -29 283 1 1190 143 10 0 chr13 24601105 24601301 -77271868 + L1MA2 LINE L1 6107 6304 0 2869 188 7 0 chr13 24601387 24601955 -77271214 + L1 LINE L1 4270 4841 -1305 4691 76 20 19 chr13 24601955 24602602 -77270567 + L1PB2 LINE L1 5504 6151 0 2230 263 57 13 chr13 24603813 24604411 -77268758 - MER115 DNA AcHobo -10 683 60 193 219 16 16 chr13 24605309 24605373 -77267796 + CT-rich Low_complexity Low_complexity 4 67 0 299 239 119 28 chr13 24606628 24606737 -77266432 + MIR3 SINE MIR 51 169 -39 212 313 240 0 chr13 24606922 24607018 -77266151 - MIR SINE MIR -62 146 28 1889 160 3 26 chr13 24607026 24607338 -77265831 - AluJo SINE Alu -7 305 1 490 298 101 6 chr13 24607898 24608056 -77265113 + MIR3 SINE MIR 23 195 -13 2327 28 7 11 chr13 24608162 24608485 -77264684 - AluY SINE Alu 0 322 1 449 234 0 2 chr13 24610182 24610272 -77262897 - MER2 DNA MER2_type -150 89 1 969 230 72 122 chr13 24610465 24610545 -77262624 + L1MC4 LINE L1 7355 7437 -605 2418 90 0 3 chr13 24610545 24610856 -77262313 + AluSg SINE Alu 1 310 0 969 230 72 122 chr13 24610856 24611376 -77261793 + L1MC4 LINE L1 7437 8042 0 312 306 68 14 chr13 24611436 24611583 -77261586 + MIR3 SINE MIR 42 196 -12 2527 78 0 0 chr13 24612767 24613075 -77260094 + AluSg SINE Alu 1 308 -2 1664 199 6 3 chr13 24615622 24615933 -77257236 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 24615966 24615987 -77257182 + AT_rich Low_complexity Low_complexity 1 21 0 1069 260 122 26 chr13 24616637 24616678 -77256491 + LTR33 LTR ERVL 55 91 -430 2114 210 128 12 chr13 24616678 24617255 -77255914 + LTR48B LTR ERV1 1 644 0 1069 260 122 26 chr13 24617255 24617632 -77255537 + LTR33 LTR ERVL 91 513 -8 192 152 0 0 chr13 24617664 24617697 -77255472 + T-rich Low_complexity Low_complexity 1 33 0 8320 12 0 1 chr13 24618706 24619682 -77253487 + L1PA3 LINE L1 5199 6173 0 472 212 62 27 chr13 24619766 24619912 -77253257 - L1MEc LINE L1 -5341 1055 905 400 318 40 11 chr13 24619948 24620124 -77253045 + MIR SINE MIR 46 226 -36 1684 144 17 50 chr13 24621302 24621601 -77251568 - AluJo SINE Alu -11 301 13 411 330 189 3 chr13 24621944 24622262 -77250907 + HsTC2 DNA Tc2 242 618 -1280 1961 217 93 28 chr13 24622596 24623248 -77249921 - L1ME3A LINE L1 -23 6141 5420 405 0 0 0 chr13 24623972 24624017 -77249152 + (CA)n Simple_repeat Simple_repeat 2 46 0 980 246 68 73 chr13 24624875 24625285 -77247884 + L2 LINE L2 2302 2709 -605 631 280 63 71 chr13 24625615 24626136 -77247033 - HAL1b LINE L1 -597 751 235 265 288 0 0 chr13 24626210 24626276 -77246893 - L2 LINE L2 0 3313 3248 363 279 115 8 chr13 24627137 24627259 -77245910 + MLT1L LTR MaLR 132 266 -349 609 249 65 20 chr13 24627365 24627629 -77245540 + MLT1L LTR MaLR 260 612 0 6213 199 15 4 chr13 24628065 24629333 -77243836 + L1P LINE L1 3220 4501 -1645 3554 27 2 0 chr13 24629358 24629920 -77243249 + L1P2 LINE L1 5107 5669 -486 308 153 0 17 chr13 24630020 24630079 -77243090 + MER51B-int LTR ERV1 3146 3203 -4613 * 1023 94 19 0 chr13 24630074 24630233 -77242936 + MER51B-int LTR ERV1 6085 6246 -1570 1613 145 0 4 chr13 24630236 24630477 -77242692 + MER51B-int LTR ERV1 7576 7815 -1 1624 100 124 0 chr13 24630479 24630729 -77242440 + MER51B LTR ERV1 1 281 -96 1321 119 2 20 chr13 24630759 24630986 -77242183 + L1P4 LINE L1 5476 5701 -462 1980 162 15 66 chr13 24630994 24631325 -77241844 + L1HS LINE L1 5652 5951 -214 2398 97 0 0 chr13 24631325 24631633 -77241536 + AluSc SINE Alu 1 308 -1 1980 162 15 66 chr13 24631633 24631714 -77241455 + L1HS LINE L1 5951 6035 -130 495 143 20 20 chr13 24631719 24631796 -77241373 + L1 LINE L1 4376 4455 -1691 755 151 0 8 chr13 24631796 24631919 -77241250 + L1PA15 LINE L1 6041 6165 0 495 143 20 20 chr13 24631919 24631939 -77241230 + L1 LINE L1 4454 4473 -1673 1039 174 24 42 chr13 24632735 24632947 -77240222 + MER3 DNA MER1_type 2 209 0 254 111 0 0 chr13 24633099 24633135 -77240034 + Alu SINE Alu 3 38 -263 2325 105 0 0 chr13 24633234 24633529 -77239640 - AluSx SINE Alu -12 300 6 7304 58 7 0 chr13 24633606 24635116 -77238053 - L1PA6 LINE L1 -2 6152 4625 9237 60 1 0 chr13 24635216 24636388 -77236781 - L1PA6 LINE L1 -1996 4150 2978 383 335 28 11 chr13 24636392 24636571 -77236598 - MARNA DNA Mariner -117 469 288 416 287 15 29 chr13 24636580 24636716 -77236453 + MIR3 SINE MIR 74 207 -1 412 250 92 43 chr13 24636717 24636792 -77236377 - MARNA DNA Mariner -286 300 230 2313 168 6 6 chr13 24636792 24637156 -77236013 + MER47A DNA MER2_type 3 366 0 412 250 92 43 chr13 24637156 24637244 -77235925 - MARNA DNA Mariner -356 230 129 24 0 0 0 chr13 24637294 24637318 -77235851 + AT_rich Low_complexity Low_complexity 1 24 0 255 302 160 56 chr13 24638658 24639032 -77234137 + L2 LINE L2 2247 2659 -655 277 339 67 67 chr13 24639117 24639433 -77233736 + L2 LINE L2 2932 3247 -25 231 305 39 94 chr13 24640428 24640556 -77232613 + MIR SINE MIR 67 187 -75 248 336 82 0 chr13 24640566 24640688 -77232481 + MIR SINE MIR 123 254 -8 312 238 0 0 chr13 24640877 24640940 -77232229 + MIR SINE MIR 200 262 0 289 273 100 27 chr13 24640953 24641103 -77232066 - L3b LINE CR1 -118 1465 1305 390 349 32 16 chr13 24641548 24641737 -77231432 + L2 LINE L2 2866 3057 -215 811 224 120 26 chr13 24643296 24643488 -77229681 + MER63A DNA MER1_type 1 210 0 547 332 71 42 chr13 24643775 24644155 -77229014 + L2 LINE L2 2880 3270 -2 512 178 92 72 chr13 24644829 24644981 -77228188 + MER112 DNA MER1_type 6 160 -100 303 276 51 41 chr13 24644983 24645081 -77228088 + L2 LINE L2 3167 3265 -7 231 303 72 59 chr13 24645988 24646140 -77227029 - MIR SINE MIR -60 202 49 301 299 0 35 chr13 24646390 24646477 -77226692 - Charlie8 DNA MER1_type -2332 85 2 815 221 127 0 chr13 24646618 24646799 -77226370 + MIR SINE MIR 37 240 -22 407 222 129 46 chr13 24648427 24648621 -77224548 - MIR SINE MIR -7 255 46 485 274 54 11 chr13 24649927 24650113 -77223056 - L2 LINE L2 -2 3311 3118 452 241 136 27 chr13 24650198 24650455 -77222714 + L1MC5 LINE L1 7631 7915 -46 207 349 40 20 chr13 24651170 24651322 -77221847 - MIR SINE MIR -49 213 59 458 318 19 26 chr13 24652457 24652611 -77220558 + MIR3 SINE MIR 16 168 -40 304 318 55 18 chr13 24652830 24652940 -77220229 + MIR SINE MIR 36 149 -59 608 211 53 119 chr13 24652950 24653287 -77219882 + HAL1 LINE L1 2081 2395 -112 535 253 60 134 chr13 24653410 24653746 -77219423 - L2 LINE L2 -19 3253 2943 7598 25 7 0 chr13 24654019 24655450 -77217719 + L1PA4 LINE L1 4700 6154 -1 25 0 0 0 chr13 24655450 24655475 -77217694 + AT_rich Low_complexity Low_complexity 1 25 0 313 339 63 25 chr13 24655782 24655944 -77217225 + MIR SINE MIR 26 192 -65 335 292 18 35 chr13 24655946 24656059 -77217110 + MIR3 SINE MIR 73 183 -25 764 300 171 32 chr13 24656298 24657024 -77216145 - L2 LINE L2 -1191 2123 1297 1332 116 0 70 chr13 24657587 24657829 -77215340 + L1PA15 LINE L1 5939 6163 -2 386 231 157 0 chr13 24659845 24659953 -77213216 - MER94 DNA DNA -9 125 1 2290 104 0 3 chr13 24660152 24660461 -77212708 + AluSg SINE Alu 1 308 -2 2107 121 3 0 chr13 24660523 24660813 -77212356 + AluSq SINE Alu 3 293 -20 319 300 0 0 chr13 24661270 24661350 -77211819 + L2 LINE L2 3234 3313 0 3518 137 28 28 chr13 24662254 24662858 -77210311 + MER6A DNA MER2_type 2 605 0 690 270 180 5 chr13 24662890 24663101 -77210068 + MIR SINE MIR 15 262 0 2336 93 3 0 chr13 24663840 24664140 -77209029 - AluSp SINE Alu -12 301 1 451 335 71 11 chr13 24664270 24664452 -77208717 - MIR SINE MIR -47 215 23 397 346 32 0 chr13 24664782 24664938 -77208231 + MIR SINE MIR 68 228 -34 391 314 10 0 chr13 24665398 24665500 -77207669 - L2 LINE L2 -1 3271 3169 2193 124 3 0 chr13 24665582 24665880 -77207289 + AluSx SINE Alu 1 299 -13 1955 111 7 4 chr13 24666776 24667082 -77206087 + AluSx SINE Alu 1 307 0 511 254 92 40 chr13 24668088 24668261 -77204908 - MIR SINE MIR -50 212 31 214 339 54 18 chr13 24668494 24668606 -77204563 - L2 LINE L2 0 3313 3198 655 184 0 14 chr13 24668920 24669067 -77204102 + L1P LINE L1 4753 4897 -1249 726 187 0 0 chr13 24669068 24669202 -77203967 - L1 LINE L1 -1455 4691 4558 1517 163 33 33 chr13 24669335 24669636 -77203533 - MER58B DNA MER1_type 0 341 41 764 261 85 15 chr13 24669796 24670068 -77203101 + MER102b DNA MER1_type 35 325 -16 422 291 166 10 chr13 24670172 24670371 -77202798 + MIR SINE MIR 19 248 -14 409 304 75 50 chr13 24670449 24670610 -77202559 - MIR3 SINE MIR -28 180 16 3969 203 5 5 chr13 24671094 24671927 -77201242 + L1P LINE L1 4304 5136 -1010 1530 189 71 0 chr13 24671925 24672263 -77200906 + L1MC4 LINE L1 7062 7423 -619 * 1575 166 14 38 chr13 24672264 24672553 -77200616 - MER1B DNA MER1_type -1 338 57 1984 186 72 23 chr13 24672564 24672965 -77200204 + L1MC4 LINE L1 7415 7844 -198 2170 114 7 0 chr13 24672965 24673263 -77199906 - AluSx SINE Alu -12 300 1 1984 186 72 23 chr13 24673263 24673335 -77199834 + L1MC4 LINE L1 7844 7911 -131 306 50 0 0 chr13 24673356 24673396 -77199773 + (GA)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chr13 24674721 24674745 -77198424 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 1123 227 54 53 chr13 24674797 24675247 -77197922 + MLT1K LTR MaLR 81 558 -30 2788 23 0 0 chr13 24675354 24675663 -77197506 - AluYb8 SINE Alu -9 309 1 418 252 23 0 chr13 24675859 24675990 -77197179 + MER103 DNA DNA 13 146 -20 560 258 8 0 chr13 24676052 24676180 -77196989 + FLAM_A SINE Alu 1 129 -13 494 234 30 96 chr13 24677161 24677358 -77195811 + MIR SINE MIR 79 262 0 2108 146 0 0 chr13 24677988 24678290 -77194879 - AluSx SINE Alu -10 302 1 180 278 0 19 chr13 24678447 24678501 -77194668 + L3b LINE CR1 1205 1257 -326 2231 94 35 0 chr13 24678750 24679038 -77194131 - AluSc SINE Alu -11 298 1 527 203 161 8 chr13 24679292 24679410 -77193759 + MIR SINE MIR 4 139 -123 3094 236 36 29 chr13 24679730 24680560 -77192609 - L1M4 LINE L1 -1198 4948 4108 578 23 23 35 chr13 24680560 24680647 -77192522 - L1PA4 LINE L1 0 6155 6070 3094 236 36 29 chr13 24680647 24680803 -77192366 - L1M4 LINE L1 -2038 4108 3955 301 342 33 0 chr13 24680923 24681043 -77192126 - L1ME LINE L1 -5941 129 6 885 229 76 46 chr13 24681256 24681623 -77191546 - HAL1 LINE L1 0 2507 2130 254 139 0 23 chr13 24681623 24681666 -77191503 + Tigger5 DNA MER2_type 4 45 -2278 256 128 0 43 chr13 24681703 24681750 -77191419 - Tigger5 DNA MER2_type -2278 45 1 291 68 0 23 chr13 24681851 24681895 -77191274 + Tigger5 DNA MER2_type 2123 2165 -158 1037 190 119 36 chr13 24681920 24682257 -77190912 - HAL1 LINE L1 -754 1753 1389 369 0 0 0 chr13 24682258 24682299 -77190870 + (TG)n Simple_repeat Simple_repeat 2 42 0 368 342 31 12 chr13 24682443 24682604 -77190565 - HAL1 LINE L1 -2065 442 279 420 252 214 15 chr13 24683115 24683321 -77189848 - MIR SINE MIR -14 248 2 239 129 29 43 chr13 24683402 24683472 -77189697 + (TAAG)n Simple_repeat Simple_repeat 1 69 0 292 346 0 0 chr13 24684358 24684439 -77188730 - MER63 DNA MER1_type -1 1059 979 285 135 77 0 chr13 24684442 24684494 -77188675 - MER63 DNA MER1_type -312 749 694 928 141 14 0 chr13 24686861 24687003 -77186166 - AluSg/x SINE Alu -33 279 136 189 316 53 40 chr13 24687297 24687373 -77185796 - L2 LINE L2 -12 3260 3184 23 0 0 0 chr13 24687789 24687812 -77185357 + AT_rich Low_complexity Low_complexity 1 23 0 10450 32 0 1 chr13 24689282 24690548 -77182621 - L1P LINE L1 -1997 4149 2885 8446 30 0 3 chr13 24690548 24692323 -77180846 + L1PA3 LINE L1 4382 6153 -2 2311 171 11 11 chr13 24692335 24692792 -77180377 + L1P LINE L1 4481 4937 -1209 1463 157 45 114 chr13 24693061 24693463 -77179706 + MLT1A2 LTR MaLR 1 374 0 180 111 0 0 chr13 24693838 24693865 -77179304 + (TATG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 24694549 24694572 -77178597 + AT_rich Low_complexity Low_complexity 1 23 0 1363 138 47 7 chr13 24695046 24695321 -77177848 + MER33 DNA MER1_type 37 322 -2 422 252 70 14 chr13 24697173 24697316 -77175853 + MIR SINE MIR 2 152 -110 240 230 8 143 chr13 24697316 24697442 -77175727 + MIR SINE MIR 127 235 -27 568 143 19 38 chr13 24697513 24697618 -77175551 + Ricksha DNA DNA 1 103 -3143 2137 159 28 3 chr13 24697630 24697982 -77175187 + Ricksha DNA DNA 240 600 -2646 1742 140 23 44 chr13 24697974 24698167 -77175002 + Ricksha DNA DNA 2882 3021 -239 * 2278 107 0 0 chr13 24698167 24698475 -77174694 - AluSq SINE Alu -5 308 1 1742 140 23 44 chr13 24698475 24698698 -77174471 + Ricksha DNA DNA 3021 3247 -13 265 136 23 0 chr13 24698783 24698827 -77174342 + Ricksha DNA DNA 2563 2607 -247 388 303 92 50 chr13 24698916 24699134 -77174035 - MIR SINE MIR -32 230 4 309 51 0 0 chr13 24699314 24699353 -77173816 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 287 374 96 0 chr13 24699521 24699636 -77173533 - L2 LINE L2 -4 3268 3143 1668 243 131 20 chr13 24701310 24701973 -77171196 - HAL1 LINE L1 -4 2503 1767 231 298 0 0 chr13 24701973 24702030 -77171139 - MIR SINE MIR -11 251 195 265 273 129 7 chr13 24702066 24702220 -77170949 + L1P5 LINE L1 5290 5467 -684 688 268 118 21 chr13 24702270 24702465 -77170704 + L1ME3A LINE L1 5626 5859 -311 1986 195 10 45 chr13 24702465 24702948 -77170221 + MER31B LTR ERV1 1 466 0 688 268 118 21 chr13 24702948 24703039 -77170130 + L1ME3A LINE L1 5859 5940 -230 257 316 68 34 chr13 24703318 24703435 -77169734 - L2 LINE L2 -190 3082 2962 1619 179 10 67 chr13 24703588 24703990 -77169179 + L1ME1 LINE L1 4679 5057 -1089 243 243 57 0 chr13 24704002 24704072 -77169097 + L1ME1 LINE L1 5210 5283 -863 1378 172 9 4 chr13 24704073 24704305 -77168864 + AluJb SINE Alu 67 299 -13 3180 223 77 26 chr13 24704306 24705136 -77168033 + L1ME1 LINE L1 5275 6146 -20 309 294 46 46 chr13 24705160 24705313 -77167856 - L2 LINE L2 -605 2709 2557 226 384 34 20 chr13 24705859 24706005 -77167164 + MIR3 SINE MIR 2 149 -59 1190 167 0 0 chr13 24706826 24707006 -77166163 + AluJb SINE Alu 1 180 -132 460 328 69 10 chr13 24707357 24707732 -77165437 - L1 LINE L1 -1058 5088 4674 1037 195 0 19 chr13 24707750 24707965 -77165204 - L1ME LINE L1 -642 5524 5314 656 238 72 6 chr13 24707969 24708150 -77165019 - L1MC4 LINE L1 -1374 6668 6476 926 191 10 10 chr13 24708472 24708681 -77164488 - L1ME LINE L1 -816 5330 5122 367 276 16 42 chr13 24708689 24708845 -77164324 - L1ME LINE L1 -2008 4138 3987 285 310 185 33 chr13 24708975 24709159 -77164010 + MIR SINE MIR 14 225 -37 284 347 0 0 chr13 24709220 24709292 -77163877 - L2 LINE L2 -2 3311 3240 1852 113 14 0 chr13 24710170 24710445 -77162724 + L1PA15 LINE L1 5884 6162 -3 240 294 39 0 chr13 24712937 24713039 -77160130 + L1ME LINE L1 5757 5862 -259 25 31 0 0 chr13 24716005 24716037 -77157132 + AT_rich Low_complexity Low_complexity 1 32 0 1893 143 7 0 chr13 24718186 24718459 -77154710 - MER1B DNA MER1_type -64 275 1 822 275 226 25 chr13 24718517 24718924 -77154245 + L2 LINE L2 2823 3311 -2 317 316 30 77 chr13 24719212 24719446 -77153723 + L2 LINE L2 2980 3202 -111 387 183 0 0 chr13 24719446 24719506 -77153663 + MER20 DNA MER1_type 160 219 0 511 300 116 38 chr13 24720149 24720469 -77152700 - L3b LINE CR1 -116 1467 1123 490 224 146 18 chr13 24720518 24720683 -77152486 - MER5A DNA MER1_type 0 189 4 209 236 28 28 chr13 24720895 24721001 -77152168 + (TA)n Simple_repeat Simple_repeat 1 106 0 264 252 45 81 chr13 24722976 24723087 -77150082 + LTR33A LTR ERVL 56 162 -361 1167 188 14 14 chr13 24723179 24723397 -77149772 + MER58A DNA MER1_type 2 219 -5 231 146 0 24 chr13 24723541 24723582 -77149587 + LTR33A LTR ERVL 458 497 -26 1991 96 68 4 chr13 24724432 24724712 -77148457 - AluSp SINE Alu -13 300 3 248 252 108 0 chr13 24724885 24724996 -77148173 - L1ME3A LINE L1 -87 6083 5961 1829 147 7 24 chr13 24725118 24725411 -77147758 - AluJo SINE Alu -12 300 13 21 36 0 0 chr13 24725594 24725622 -77147547 + AT_rich Low_complexity Low_complexity 1 28 0 275 327 48 58 chr13 24726219 24726323 -77146846 + MIR SINE MIR 28 130 -78 270 298 107 0 chr13 24726339 24726423 -77146746 + MIR3 SINE MIR 105 197 -11 221 347 92 25 chr13 24728335 24728531 -77144638 + L2 LINE L2 2851 3059 -213 2338 74 0 10 chr13 24728730 24729028 -77144141 + AluSp SINE Alu 1 295 -18 377 393 11 6 chr13 24729976 24730154 -77143015 + L2 LINE L2 2565 2743 -571 1130 149 6 0 chr13 24730426 24730600 -77142569 - FAM SINE Alu 0 175 1 194 385 46 9 chr13 24730625 24730734 -77142435 + L2 LINE L2 3142 3254 -18 280 323 72 36 chr13 24731896 24732063 -77141106 - L3 LINE CR1 -6 1571 1399 2497 60 0 0 chr13 24732247 24732546 -77140623 + AluY SINE Alu 1 299 -12 2414 125 8 5 chr13 24732653 24733052 -77140117 + L1MA4A LINE L1 5900 6299 -4 264 248 78 179 chr13 24733298 24733580 -77139589 + MIR SINE MIR 10 262 0 22 0 0 0 chr13 24734058 24734080 -77139089 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 24734515 24734537 -77138632 + AT_rich Low_complexity Low_complexity 1 22 0 622 275 60 0 chr13 24735684 24735866 -77137303 + MIR SINE MIR 60 252 -10 254 256 23 12 chr13 24735868 24735954 -77137215 + (TTA)n Simple_repeat Simple_repeat 3 89 0 47 24 4 0 chr13 24737895 24737993 -77135176 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr13 24738741 24738771 -77134398 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr13 24739392 24739435 -77133734 + AT_rich Low_complexity Low_complexity 1 43 0 1562 157 16 36 chr13 24741061 24741366 -77131803 - L1MA7 LINE L1 -3 6288 5990 660 273 39 61 chr13 24743348 24743673 -77129496 - L2 LINE L2 -276 3037 2723 1274 209 90 47 chr13 24743721 24744123 -77129046 + LTR40b LTR ERVL 44 462 0 3852 248 81 120 chr13 24744125 24746306 -77126863 - L2 LINE L2 -656 2658 563 192 347 32 11 chr13 24746312 24746407 -77126762 - L2 LINE L2 -3059 255 159 622 243 80 42 chr13 24746699 24747014 -77126155 - L1MD3 LINE L1 -1984 5824 5613 336 320 44 61 chr13 24747257 24747367 -77125802 + MIR SINE MIR 3 110 -152 2176 127 0 0 chr13 24747367 24747674 -77125495 + AluSx SINE Alu 1 307 -5 336 320 44 61 chr13 24747674 24747744 -77125425 + MIR SINE MIR 110 180 -82 198 222 0 0 chr13 24747793 24747847 -77125322 + (TTA)n Simple_repeat Simple_repeat 1 54 0 405 0 0 0 chr13 24750453 24750498 -77122671 + (CA)n Simple_repeat Simple_repeat 2 46 0 1015 47 0 8 chr13 24751549 24751678 -77121491 + L1PA3 LINE L1 6026 6153 -2 198 91 0 0 chr13 24751684 24751717 -77121452 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2101 127 33 33 chr13 24752280 24752643 -77120526 + THE1B LTR MaLR 1 363 -1 204 125 62 0 chr13 24753140 24753188 -77119981 + (TA)n Simple_repeat Simple_repeat 2 52 0 510 302 29 71 chr13 24754219 24754527 -77118642 + L2 LINE L2 2977 3271 -1 2139 113 0 0 chr13 24754712 24755004 -77118165 + AluSg SINE Alu 1 292 -18 1819 135 71 17 chr13 24757488 24757784 -77115385 - AluSx SINE Alu 0 312 1 746 190 47 65 chr13 24758227 24758459 -77114710 + L1MA7 LINE L1 6021 6248 -43 310 336 82 9 chr13 24759707 24759817 -77113352 - L2 LINE L2 -2 3311 3194 2464 81 0 3 chr13 24760497 24760807 -77112362 - AluY SINE Alu 0 311 3 577 264 56 76 chr13 24761620 24761923 -77111246 + L2 LINE L2 3017 3313 0 185 184 0 0 chr13 24762082 24762120 -77111049 + L2 LINE L2 3015 3052 -261 188 366 0 0 chr13 24762257 24762328 -77110841 + L2 LINE L2 3201 3271 -1 380 402 94 18 chr13 24762938 24763162 -77110007 - L2 LINE L2 0 3272 3032 946 228 123 19 chr13 24763163 24763522 -77109647 - Charlie7 DNA MER1_type -123 2489 2094 231 326 174 0 chr13 24763826 24763964 -77109205 - L2 LINE L2 -559 2755 2594 550 184 48 68 chr13 24764385 24764532 -77108637 + L2 LINE L2 3159 3302 -11 1382 230 53 65 chr13 24764536 24764970 -77108199 + LTR16A1 LTR ERVL 29 457 0 239 0 0 31 chr13 24765236 24765268 -77107901 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2121 87 7 14 chr13 24765473 24765793 -77107376 - AluY SINE Alu 0 318 1 2155 68 0 0 chr13 24765795 24766074 -77107095 - L1PA6 LINE L1 -1 6153 5875 2958 53 0 0 chr13 24766075 24766497 -77106672 + L1P2 LINE L1 5205 5626 -528 218 302 151 9 chr13 24767197 24767303 -77105866 + L3 LINE CR1 586 706 -871 13601 38 1 1 chr13 24767636 24769292 -77103877 - L1PA4 LINE L1 -1377 4769 3114 7119 36 7 22 chr13 24769292 24770691 -77102478 + L1PA4 LINE L1 4770 6155 0 2241 164 6 81 chr13 24770691 24770807 -77102362 + Tigger1 DNA MER2_type 1471 1594 -824 2251 108 0 0 chr13 24770807 24771142 -77102027 + AluSc SINE Alu 1 309 0 213 39 0 0 chr13 24771142 24771168 -77102001 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2241 164 6 81 chr13 24771168 24771544 -77101625 + Tigger1 DNA MER2_type 1592 1927 -491 811 261 115 0 chr13 24771563 24771789 -77101380 + MIR SINE MIR 1 252 -10 22 35 0 0 chr13 24771789 24771818 -77101351 + AT_rich Low_complexity Low_complexity 1 29 0 180 301 133 0 chr13 24771819 24771902 -77101267 + L3b LINE CR1 1116 1209 -374 19961 65 1 1 chr13 24772781 24776207 -77096962 + L1PA6 LINE L1 2722 6152 -2 1661 85 0 0 chr13 24776284 24776485 -77096684 + AluSq SINE Alu 6 206 -107 5796 96 5 17 chr13 24777747 24777768 -77095401 - L1MA3 LINE L1 0 6305 6285 2013 112 115 15 chr13 24777768 24778098 -77095071 + THE1B LTR MaLR 2 364 0 5796 96 5 17 chr13 24778098 24778939 -77094230 - L1MA3 LINE L1 -20 6285 5454 22 70 0 0 chr13 24779093 24779136 -77094033 + AT_rich Low_complexity Low_complexity 1 43 0 187 329 13 13 chr13 24779384 24779460 -77093709 - MIR3 SINE MIR -22 186 111 651 266 102 9 chr13 24779469 24779811 -77093358 + L1M4 LINE L1 3001 3374 -2772 26 0 0 0 chr13 24780192 24780218 -77092951 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr13 24780383 24780409 -77092760 + AT_rich Low_complexity Low_complexity 1 26 0 1509 156 4 0 chr13 24781072 24781316 -77091853 - L1PA16 LINE L1 -12 6154 5910 343 180 117 54 chr13 24781898 24782009 -77091160 - L1M4 LINE L1 -1703 4443 4326 307 200 9 118 chr13 24782020 24782130 -77091039 - L1MC4 LINE L1 -1331 6711 6614 1803 234 96 12 chr13 24782147 24782753 -77090416 - L1M4 LINE L1 -1807 4339 3683 894 261 100 22 chr13 24782746 24783195 -77089974 - L1MEc LINE L1 -4688 2434 1951 * 480 264 133 22 chr13 24783202 24783517 -77089652 - L1MEc LINE L1 -4890 1731 1306 1213 128 79 57 chr13 24785647 24785874 -77087295 + MER46A DNA MER2_type 3 234 -2 538 319 27 11 chr13 24785879 24786064 -77087105 - MIR SINE MIR -32 230 43 500 248 55 9 chr13 24786392 24786501 -77086668 + L2 LINE L2 3158 3271 -1 1556 181 38 0 chr13 24786613 24786733 -77086436 + AluJo SINE Alu 1 115 -197 230 0 33 0 chr13 24786733 24786763 -77086406 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1556 181 38 0 chr13 24786763 24786908 -77086261 + AluJo SINE Alu 115 276 -36 447 68 0 0 chr13 24786919 24786978 -77086191 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 21 0 0 0 chr13 24787233 24787254 -77085915 + AT_rich Low_complexity Low_complexity 1 21 0 334 250 0 22 chr13 24787897 24787989 -77085180 + CT-rich Low_complexity Low_complexity 3 92 0 635 330 121 42 chr13 24787994 24788867 -77084302 - L2 LINE L2 -8 3264 2325 22 35 0 0 chr13 24789201 24789230 -77083939 + AT_rich Low_complexity Low_complexity 1 29 0 207 301 0 27 chr13 24789942 24790015 -77083154 + GA-rich Low_complexity Low_complexity 2 72 0 218 317 40 40 chr13 24790999 24791100 -77082069 + MIR3 SINE MIR 105 205 -3 277 119 34 0 chr13 24791135 24791194 -77081975 + L1ME4a LINE L1 6061 6121 0 23 0 0 0 chr13 24791692 24791715 -77081454 + AT_rich Low_complexity Low_complexity 1 23 0 286 267 103 67 chr13 24792440 24792531 -77080638 + L1MC5 LINE L1 7505 7591 -370 1600 199 3 13 chr13 24792531 24792832 -77080337 - AluJb SINE Alu -12 300 3 286 267 103 67 chr13 24792832 24793099 -77080070 + L1MC5 LINE L1 7591 7876 -85 217 236 127 0 chr13 24793171 24793226 -77079943 + MIR SINE MIR 200 261 -1 432 318 115 5 chr13 24793282 24793474 -77079695 + MIR SINE MIR 20 232 -30 180 345 71 9 chr13 24793627 24793740 -77079429 - L2 LINE L2 -212 3060 2941 2367 57 23 3 chr13 24793793 24794094 -77079075 + AluY SINE Alu 1 307 -4 24 32 0 0 chr13 24794385 24794416 -77078753 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr13 24794529 24794550 -77078619 + (A)n Simple_repeat Simple_repeat 1 21 0 2212 116 0 0 chr13 24794757 24795050 -77078119 - AluSx SINE Alu -19 293 1 1918 171 0 10 chr13 24795198 24795508 -77077661 - AluJb SINE Alu -4 308 2 2388 79 3 0 chr13 24795514 24795817 -77077352 - AluSp SINE Alu -9 304 1 23 33 0 0 chr13 24796335 24796365 -77076804 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 24797451 24797479 -77075690 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr13 24797751 24797774 -77075395 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 2066 127 0 10 chr13 24797778 24798070 -77075099 - AluSx SINE Alu -23 289 1 209 267 0 0 chr13 24798106 24798151 -77075018 - L2 LINE L2 -4 3309 3265 267 310 35 49 chr13 24798318 24798460 -77074709 - MIR3 SINE MIR 0 208 69 523 332 20 5 chr13 24800264 24800466 -77072703 - MIR SINE MIR -40 222 18 22 56 0 0 chr13 24800542 24800578 -77072591 + AT_rich Low_complexity Low_complexity 1 36 0 442 332 121 33 chr13 24800735 24801441 -77071728 - L2 LINE L2 -10 3262 2482 21 0 0 0 chr13 24801983 24802004 -77071165 + AT_rich Low_complexity Low_complexity 1 21 0 2315 74 0 13 chr13 24802460 24802772 -77070397 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 24802782 24802803 -77070366 + AT_rich Low_complexity Low_complexity 1 21 0 237 212 15 15 chr13 24803460 24803526 -77069643 + (TA)n Simple_repeat Simple_repeat 2 67 0 721 196 0 0 chr13 24803529 24803641 -77069528 - FLAM_A SINE Alu -30 112 1 23 33 0 0 chr13 24803659 24803689 -77069480 + AT_rich Low_complexity Low_complexity 1 30 0 544 278 68 35 chr13 24803751 24803978 -77069191 - MIR SINE MIR -16 246 13 265 338 35 21 chr13 24804084 24804229 -77068940 - L2 LINE L2 -214 3058 2912 199 260 71 55 chr13 24804491 24804618 -77068551 - L2 LINE L2 -1317 1997 1869 332 319 184 20 chr13 24805187 24805795 -77067374 + L2 LINE L2 2174 2881 -433 494 368 93 33 chr13 24805884 24806333 -77066836 + L2 LINE L2 2498 2973 -341 334 317 48 10 chr13 24806729 24806833 -77066336 - L2 LINE L2 0 3272 3165 214 208 19 0 chr13 24807297 24807350 -77065819 + CT-rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chr13 24807675 24807711 -77065458 + AT_rich Low_complexity Low_complexity 1 36 0 219 69 0 0 chr13 24807926 24807955 -77065214 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 275 194 37 0 chr13 24808108 24808216 -77064953 + (TA)n Simple_repeat Simple_repeat 1 112 0 2217 124 0 0 chr13 24808315 24808613 -77064556 + AluSg SINE Alu 1 298 -12 1682 164 11 4 chr13 24809340 24809608 -77063561 + AluJb SINE Alu 1 270 -42 189 0 0 0 chr13 24809616 24809637 -77063532 + (TC)n Simple_repeat Simple_repeat 2 22 0 254 109 0 0 chr13 24809659 24809705 -77063464 + LTR66 LTR ERVL 394 439 -171 193 303 56 22 chr13 24809761 24809850 -77063319 + MER5B DNA MER1_type 87 178 0 22 35 0 0 chr13 24809858 24809887 -77063282 + AT_rich Low_complexity Low_complexity 1 29 0 201 263 0 0 chr13 24810048 24810105 -77063064 + (TAA)n Simple_repeat Simple_repeat 2 58 0 250 296 169 17 chr13 24810106 24810278 -77062891 - MIR SINE MIR -1 261 64 270 240 47 54 chr13 24812059 24812188 -77060981 + MER103 DNA DNA 8 135 -31 270 0 0 0 chr13 24812567 24812597 -77060572 + (CA)n Simple_repeat Simple_repeat 2 31 0 446 38 0 0 chr13 24816482 24816535 -77056634 + (TATG)n Simple_repeat Simple_repeat 2 54 0 713 224 99 48 chr13 24816701 24816887 -77056282 - L1MC4 LINE L1 -1 8041 7831 2578 97 22 8 chr13 24816887 24817257 -77055912 - THE1C LTR MaLR 0 375 1 713 224 99 48 chr13 24817257 24817383 -77055786 - L1MC4 LINE L1 -211 7831 7713 294 336 86 51 chr13 24817398 24817770 -77055399 - L2 LINE L2 -780 2534 2150 207 242 15 38 chr13 24818038 24818170 -77054999 + CT-rich Low_complexity Low_complexity 3 131 0 897 217 137 0 chr13 24818289 24818538 -77054631 + L1MC4 LINE L1 6460 6742 -1300 5911 60 26 50 chr13 24818570 24819632 -77053537 + SVA Other Other 7 868 -554 5385 71 4 1 chr13 24820709 24821411 -77051758 + L1PA11 LINE L1 5463 6166 -8 274 157 0 0 chr13 24821881 24821932 -77051237 + L1MC4 LINE L1 6652 6702 -1340 350 346 11 33 chr13 24822082 24822264 -77050905 - MER5B DNA MER1_type 0 178 1 446 0 19 0 chr13 24823183 24823237 -77049932 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 652 200 0 0 chr13 24823252 24823367 -77049802 - FLAM_C SINE Alu -20 123 9 509 71 47 12 chr13 24824100 24824185 -77048984 - L1P LINE L1 -1762 4384 4297 1798 67 20 20 chr13 24824185 24824438 -77048731 + L1PA7 LINE L1 5900 6153 -1 1793 167 7 3 chr13 24824445 24824732 -77048437 + AluJb SINE Alu 9 296 -16 597 289 79 21 chr13 24824885 24825075 -77048094 - MIR SINE MIR -1 261 61 2681 32 3 0 chr13 24825466 24825776 -77047393 + AluY SINE Alu 1 311 0 351 0 0 0 chr13 24825782 24825821 -77047348 + (TA)n Simple_repeat Simple_repeat 2 40 0 2163 249 20 15 chr13 24827327 24827985 -77045184 + L1P LINE L1 3013 3673 -2473 26 30 0 0 chr13 24828471 24828504 -77044665 + AT_rich Low_complexity Low_complexity 1 33 0 450 305 124 24 chr13 24830228 24830395 -77042774 - MIR SINE MIR -3 259 72 213 358 78 26 chr13 24830395 24830588 -77042581 + MIR SINE MIR 1 203 -59 24 0 0 0 chr13 24831239 24831263 -77041906 + AT_rich Low_complexity Low_complexity 1 24 0 390 240 20 0 chr13 24831499 24831599 -77041570 + MLT1D LTR MaLR 402 503 -2 362 236 69 48 chr13 24831959 24832110 -77041059 - MIR SINE MIR -6 256 100 198 267 59 59 chr13 24832143 24832278 -77040891 - L2 LINE L2 -1025 2289 2155 499 321 58 26 chr13 24833400 24833590 -77039579 - MIR SINE MIR -59 203 8 481 208 38 9 chr13 24833678 24833784 -77039385 + MER3 DNA MER1_type 1 109 -100 433 86 0 0 chr13 24833795 24833853 -77039316 - Alu SINE Alu -16 293 236 282 308 11 33 chr13 24834020 24834111 -77039058 + L2 LINE L2 3186 3274 -39 181 250 42 0 chr13 24834224 24834272 -77038897 - L2 LINE L2 -528 2786 2737 258 280 13 13 chr13 24834609 24834684 -77038485 + L2 LINE L2 1851 1925 -1389 2770 255 103 8 chr13 24834687 24835728 -77037441 + L2 LINE L2 2039 3272 -41 584 361 95 22 chr13 24835780 24836315 -77036854 + L2 LINE L2 1931 2504 -810 185 339 35 58 chr13 24836465 24836636 -77036533 + L2 LINE L2 3146 3312 -1 702 283 113 20 chr13 24839028 24839588 -77033581 - L1ME LINE L1 -348 5822 5202 490 296 74 7 chr13 24839725 24840022 -77033147 - L1ME LINE L1 -1300 4846 4530 21 0 0 0 chr13 24840141 24840162 -77033007 + AT_rich Low_complexity Low_complexity 1 21 0 361 329 47 0 chr13 24840313 24840462 -77032707 - L1ME LINE L1 -2036 4110 3955 2215 102 0 13 chr13 24840834 24841137 -77032032 + AluSc SINE Alu 1 299 -10 5784 135 12 3 chr13 24841150 24842070 -77031099 - L1P4 LINE L1 -1200 4946 4019 2254 153 40 1 chr13 24842063 24842555 -77030614 + L1P4 LINE L1 4947 5455 -713 * 378 61 0 0 chr13 24843266 24843315 -77029854 + (CA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr13 24843481 24843510 -77029659 + AT_rich Low_complexity Low_complexity 1 29 0 3363 242 110 16 chr13 24844128 24845249 -77027920 - L1MC4 LINE L1 -64 7978 6662 1884 138 33 0 chr13 24845388 24845690 -77027479 + AluSx SINE Alu 1 311 0 950 223 11 0 chr13 24845989 24846173 -77026996 + MER5A DNA MER1_type 4 189 0 220 100 20 20 chr13 24848169 24848219 -77024950 + (CA)n Simple_repeat Simple_repeat 1 50 0 2900 78 20 8 chr13 24848220 24848615 -77024554 - MLT2A1 LTR ERVL -44 400 1 5524 197 39 7 chr13 24848615 24850258 -77022911 - L1P4 LINE L1 -456 5710 4019 284 175 0 123 chr13 24850259 24850373 -77022796 - L1M4 LINE L1 -815 5331 5232 603 151 25 0 chr13 24850492 24850611 -77022558 - MLT2B1 LTR ERVL -398 122 1 1818 171 0 16 chr13 24851508 24851824 -77021345 - AluJo SINE Alu -1 311 1 270 0 0 0 chr13 24851999 24852029 -77021140 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1724 189 0 0 chr13 24852034 24852309 -77020860 - AluSx SINE Alu -37 275 1 824 211 0 7 chr13 24852365 24852517 -77020652 - MER58B DNA MER1_type -3 338 188 234 272 162 15 chr13 24852539 24852553 -77020616 - L1MA10 LINE L1 -2 6332 6319 1454 185 120 3 chr13 24852553 24852697 -77020472 - L1ME1 LINE L1 -5 6161 6018 592 237 43 38 chr13 24852697 24852908 -77020261 - L1MB4 LINE L1 -191 5989 5778 428 98 39 0 chr13 24852957 24853059 -77020110 + (TA)n Simple_repeat Simple_repeat 2 107 0 608 206 187 14 chr13 24853649 24853863 -77019306 - HsTC2 DNA Tc2 0 1900 1650 201 111 22 22 chr13 24853866 24853911 -77019258 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 10450 32 0 1 chr13 24854074 24855340 -77017829 - L1P LINE L1 -1997 4149 2885 8446 30 0 3 chr13 24855340 24857117 -77016052 + L1PA3 LINE L1 4382 6155 0 496 223 127 0 chr13 24857263 24857429 -77015740 - L2 LINE L2 -742 2572 2386 2267 98 10 0 chr13 24857757 24858062 -77015107 - AluSx SINE Alu -4 308 1 2254 101 10 3 chr13 24858758 24859064 -77014105 - AluSx SINE Alu -2 310 3 187 242 65 32 chr13 24859081 24859143 -77014026 - L2 LINE L2 -4 3309 3246 554 88 0 25 chr13 24859506 24859586 -77013583 + MSTB1 LTR MaLR 302 379 -53 207 0 0 0 chr13 24859588 24859611 -77013558 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 6978 156 19 16 chr13 24859620 24861873 -77011296 - L1MA3 LINE L1 -3 6302 4044 1794 123 82 7 chr13 24861883 24862176 -77010993 + MSTA LTR MaLR 1 315 -113 378 212 168 62 chr13 24862897 24863076 -77010093 - HAL1b LINE L1 -201 1147 950 1009 266 22 33 chr13 24863152 24863520 -77009649 + L1ME1 LINE L1 5796 6159 -7 610 222 50 16 chr13 24864098 24864328 -77008841 + L1ME2 LINE L1 5796 6031 -144 22 0 0 0 chr13 24864450 24864472 -77008697 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 24864666 24864695 -77008474 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 222 28 chr13 24865682 24865826 -77007343 - L2 LINE L2 -856 2458 2287 1543 168 57 20 chr13 24865885 24866182 -77006987 + AluJo SINE Alu 5 312 0 285 109 0 0 chr13 24866191 24866237 -77006932 + (GGGGA)n Simple_repeat Simple_repeat 5 50 0 239 250 0 69 chr13 24867688 24867804 -77005365 + HAL1 LINE L1 1156 1263 -1244 1591 185 13 22 chr13 24867922 24868236 -77004933 + AluJo SINE Alu 1 311 -1 250 271 9 28 chr13 24868241 24868348 -77004821 + HAL1 LINE L1 1912 2016 -491 959 256 30 53 chr13 24868460 24868933 -77004236 + HAL1 LINE L1 2040 2501 -6 751 235 58 86 chr13 24869838 24870267 -77002902 - L1MC4 LINE L1 0 8042 7626 4846 82 28 10 chr13 24870511 24870865 -77002304 + L1PB2 LINE L1 5428 5774 -377 444 37 0 0 chr13 24870865 24870919 -77002250 + (CA)n Simple_repeat Simple_repeat 2 55 0 4846 82 28 10 chr13 24870919 24871274 -77001895 + L1PB2 LINE L1 5774 6150 -1 2436 70 0 3 chr13 24871296 24871595 -77001574 + AluY SINE Alu 1 298 -13 22 0 0 0 chr13 24871642 24871664 -77001505 + AT_rich Low_complexity Low_complexity 1 22 0 1110 158 38 25 chr13 24872488 24872601 -77000568 + L1MA9 LINE L1 5714 5824 -488 2529 103 14 0 chr13 24872601 24872951 -77000218 - THE1A LTR MaLR 0 355 1 1110 158 38 25 chr13 24872951 24873077 -77000092 + L1MA9 LINE L1 5824 5956 -356 639 246 58 73 chr13 24873076 24873406 -76999763 - L1M3e LINE L1 -5208 1822 1431 * 2293 114 0 0 chr13 24873830 24874138 -76999031 - AluSg SINE Alu -2 308 1 1953 144 35 32 chr13 24874982 24875356 -76997813 - THE1C LTR MaLR 0 375 1 308 289 18 44 chr13 24876023 24876137 -76997032 - MIR3 SINE MIR -25 183 73 313 339 63 25 chr13 24876139 24876301 -76996868 - MIR SINE MIR -65 143 26 25 0 0 0 chr13 24876608 24876633 -76996536 + AT_rich Low_complexity Low_complexity 1 25 0 7656 27 0 0 chr13 24876633 24877591 -76995578 - L1PA4 LINE L1 -1 6154 5199 5439 193 37 26 chr13 24878277 24878382 -76994787 - L1M1 LINE L1 -5292 2273 2171 2417 118 34 14 chr13 24878382 24878739 -76994430 + THE1B LTR MaLR 1 364 0 5439 193 37 26 chr13 24878739 24880160 -76993009 - L1M1 LINE L1 -5394 2171 16 237 275 175 17 chr13 24880209 24880329 -76992840 - MIR SINE MIR -121 141 3 193 309 82 21 chr13 24880686 24880783 -76992386 - L3b LINE CR1 -182 1401 1299 22 0 0 0 chr13 24880853 24880875 -76992294 + AT_rich Low_complexity Low_complexity 1 22 0 233 167 0 56 chr13 24880945 24881017 -76992152 + A-rich Low_complexity Low_complexity 1 68 0 229 212 424 0 chr13 24931350 24931449 -76941720 - MIR SINE MIR 0 262 122 740 204 44 7 chr13 24931712 24931849 -76941320 + MER5A DNA MER1_type 34 175 -14 860 211 12 0 chr13 24932390 24932556 -76940613 - LTR33 LTR ERVL -28 493 326 407 149 25 246 chr13 24932642 24932923 -76940246 + L1M4 LINE L1 2476 2694 -3452 1060 202 28 44 chr13 24933030 24933124 -76940045 + L1M4 LINE L1 2675 2769 -3377 2163 108 3 19 chr13 24933124 24933431 -76939738 + AluSq SINE Alu 1 302 -11 1060 202 28 44 chr13 24933431 24933584 -76939585 + L1M4 LINE L1 2769 2918 -3228 279 294 20 39 chr13 24933584 24933686 -76939483 + MER117 DNA MER1_type 98 197 0 284 310 65 73 chr13 24933813 24934045 -76939124 + L2 LINE L2 2204 2433 -881 801 211 54 111 chr13 24934204 24934555 -76938614 + Charlie2 DNA MER1_type 2532 2862 0 208 292 167 0 chr13 24934596 24934668 -76938501 + L2 LINE L2 3187 3270 -2 826 322 31 6 chr13 24934955 24935275 -76937894 + MER57-int LTR ERV1 6816 7143 -394 1161 269 108 18 chr13 24935277 24935667 -76937502 + MER57B LTR ERV1 1 425 -9 1429 157 0 22 chr13 24935700 24935923 -76937246 - MER20 DNA MER1_type -1 218 1 2056 126 3 17 chr13 24936561 24936708 -76936461 + AluSx SINE Alu 3 150 -162 2695 111 6 6 chr13 24936708 24937070 -76936099 + THE1B LTR MaLR 3 364 0 2056 126 3 17 chr13 24937070 24937223 -76935946 + AluSx SINE Alu 150 299 -13 495 247 143 17 chr13 24938746 24938977 -76934192 - MIR SINE MIR 0 262 3 183 100 0 0 chr13 24939087 24939117 -76934052 + (A)n Simple_repeat Simple_repeat 1 30 0 2302 43 20 23 chr13 24939207 24939508 -76933661 - AluY SINE Alu -11 300 1 324 312 55 18 chr13 24939799 24939908 -76933261 + MIR3 SINE MIR 75 187 -21 308 309 81 7 chr13 24940204 24940340 -76932829 - MIR3 SINE MIR -34 174 29 224 264 0 0 chr13 24941867 24941920 -76931249 - MIR SINE MIR -53 209 157 416 200 91 9 chr13 24941979 24942089 -76931080 - MIR SINE MIR -56 206 88 1665 152 0 19 chr13 24942252 24942515 -76930654 - AluJo SINE Alu -16 296 39 202 339 17 0 chr13 24942519 24942578 -76930591 - L2 LINE L2 -16 3256 3197 193 328 68 68 chr13 24942686 24942921 -76930248 - L2 LINE L2 -224 3048 2814 2337 103 3 0 chr13 24943572 24943882 -76929287 + AluSx SINE Alu 1 311 -1 566 232 14 70 chr13 24944076 24944218 -76928951 - MER5A DNA MER1_type 0 189 56 2297 111 0 16 chr13 24944309 24944625 -76928544 + AluSp SINE Alu 1 311 -2 1949 153 10 0 chr13 24944809 24945104 -76928065 - AluJb SINE Alu -14 298 1 350 284 148 7 chr13 24945209 24945364 -76927805 - L1MC/D LINE L1 -2376 5432 5256 721 277 62 22 chr13 24945471 24945597 -76927572 + MIR SINE MIR 20 160 -102 2197 100 10 3 chr13 24945597 24945896 -76927273 + AluSc SINE Alu 1 301 -8 721 277 62 22 chr13 24945896 24945993 -76927176 + MIR SINE MIR 160 252 -10 189 0 0 0 chr13 24947321 24947342 -76925827 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 21 0 0 0 chr13 24947342 24947363 -76925806 + AT_rich Low_complexity Low_complexity 1 21 0 2188 119 0 0 chr13 24947363 24947649 -76925520 - AluSx SINE Alu -26 286 1 206 276 52 17 chr13 24947998 24948056 -76925113 + L2 LINE L2 2942 3001 -312 375 263 113 30 chr13 24948106 24948239 -76924930 + L2 LINE L2 3166 3309 -4 23 54 0 0 chr13 24948418 24948455 -76924714 + AT_rich Low_complexity Low_complexity 1 37 0 1311 185 8 4 chr13 24948455 24948709 -76924460 - L1MB3 LINE L1 -7 6176 5922 1663 223 112 23 chr13 24948744 24949216 -76923953 - MLT2B1 LTR ERVL -6 514 1 3150 123 6 12 chr13 24949216 24949704 -76923465 - L1MB3 LINE L1 -255 5928 5444 320 258 15 0 chr13 24950600 24950666 -76922503 - L2 LINE L2 -21 3251 3185 862 278 119 68 chr13 24950761 24951272 -76921897 + MER21B LTR ERV1 1 537 -326 342 209 73 36 chr13 24951307 24951417 -76921752 + MER21B LTR ERV1 626 739 -124 192 349 0 0 chr13 24951549 24951615 -76921554 - MIR SINE MIR -113 149 84 38 39 0 0 chr13 24952378 24952430 -76920739 + AT_rich Low_complexity Low_complexity 1 52 0 324 263 113 27 chr13 24952438 24952624 -76920545 - MER20B DNA MER1_type -550 233 32 533 96 12 48 chr13 24952772 24952855 -76920314 - MADE1 DNA Mariner 0 80 1 1911 110 10 55 chr13 24953849 24954157 -76919012 - AluSc SINE Alu -15 294 1 2388 88 3 0 chr13 24954992 24955299 -76917870 + AluSc SINE Alu 2 309 0 572 246 205 8 chr13 24955475 24955743 -76917426 + L1ME1 LINE L1 5522 5842 -279 460 254 16 8 chr13 24956330 24956452 -76916717 - L2 LINE L2 -996 2318 2196 1136 181 10 20 chr13 24956469 24956673 -76916496 + MER20 DNA MER1_type 1 202 -17 496 159 103 111 chr13 24956914 24957040 -76916129 - FLAM_C SINE Alu -10 133 9 402 323 56 60 chr13 24957041 24957494 -76915675 + L2 LINE L2 2536 3271 -1 238 317 144 37 chr13 24957535 24957806 -76915363 - L2 LINE L2 -1144 2170 1871 1042 288 79 4 chr13 24957807 24958074 -76915095 - MLT2E LTR ERVL -306 322 36 1232 254 57 35 chr13 24958138 24958649 -76914520 - L1MEc LINE L1 -4564 1832 1311 596 214 23 88 chr13 24958785 24959000 -76914169 + L2 LINE L2 3113 3313 0 220 289 105 0 chr13 24959141 24959255 -76913914 - L2 LINE L2 -1503 1811 1686 408 318 76 33 chr13 24959440 24959770 -76913399 + ERVL LTR ERVL 5041 5384 -380 2037 129 3 0 chr13 24959814 24960108 -76913061 + AluSx SINE Alu 6 300 -12 719 286 143 34 chr13 24960202 24960614 -76912555 + LTR16A1 LTR ERVL 1 457 0 600 232 65 7 chr13 24961010 24961148 -76912021 + MER5A DNA MER1_type 7 152 -37 806 171 12 18 chr13 24961189 24961353 -76911816 + L1MB5 LINE L1 6012 6174 0 711 227 87 19 chr13 24961354 24961561 -76911608 + L1ME1 LINE L1 5941 6161 -5 191 256 0 0 chr13 24961592 24961635 -76911534 + MER5A DNA MER1_type 147 189 0 1487 215 106 81 chr13 24961645 24962203 -76910966 + Charlie7 DNA MER1_type 3 574 -2038 * 2247 229 53 14 chr13 24962201 24962786 -76910383 + Charlie7 DNA MER1_type 1765 2372 -240 299 334 145 22 chr13 24962815 24963126 -76910043 + L2 LINE L2 2150 2498 -816 243 325 160 15 chr13 24963661 24963867 -76909302 + L2 LINE L2 2153 2388 -926 303 67 40 40 chr13 24963996 24964071 -76909098 + (TA)n Simple_repeat Simple_repeat 2 76 0 185 296 220 31 chr13 24964814 24964973 -76908196 - L2 LINE L2 -572 2742 2554 282 326 8 31 chr13 24965042 24965171 -76907998 + GA-rich Low_complexity Low_complexity 5 130 0 239 339 77 35 chr13 24966389 24966675 -76906494 + LTR16A LTR ERVL 60 357 -93 466 100 0 0 chr13 24967294 24967354 -76905815 - Alu SINE Alu -252 61 2 22 0 0 0 chr13 24967451 24967473 -76905696 + AT_rich Low_complexity Low_complexity 1 22 0 2221 116 0 3 chr13 24967831 24968133 -76905036 - AluSx SINE Alu -11 301 1 625 293 82 77 chr13 24968883 24968909 -76904260 - L3 LINE CR1 -1 1576 1552 2133 117 13 0 chr13 24968909 24969207 -76903962 + AluSx SINE Alu 1 302 -10 625 293 82 77 chr13 24969207 24969607 -76903562 - L3 LINE CR1 -25 1552 1148 1699 190 26 21 chr13 24969669 24969981 -76903188 + L1MC4a LINE L1 5171 5486 -698 2322 80 10 3 chr13 24969981 24970281 -76902888 + AluSq SINE Alu 1 302 -11 1699 190 26 21 chr13 24970281 24970405 -76902764 + L1MC4a LINE L1 5486 5608 -576 272 306 135 40 chr13 24971256 24971377 -76901792 - MIR SINE MIR -14 248 140 1955 147 0 16 chr13 24971377 24971684 -76901485 - AluJb SINE Alu -10 302 1 272 306 135 40 chr13 24971684 24971784 -76901385 - MIR SINE MIR -122 140 6 2112 124 10 7 chr13 24971857 24972164 -76901005 + AluSx SINE Alu 1 308 -4 1712 138 11 11 chr13 24972164 24972429 -76900740 - L1MB4 LINE L1 -20 6160 5893 437 294 113 32 chr13 24972691 24972912 -76900257 - MIR SINE MIR -10 252 14 749 205 0 0 chr13 24974478 24974600 -76898569 + FRAM SINE Alu 1 122 -54 839 204 14 64 chr13 24974607 24974827 -76898342 + AluJo SINE Alu 89 297 -15 2260 92 24 0 chr13 24975289 24975581 -76897588 - AluSg SINE Alu -3 307 9 21 0 0 0 chr13 24975886 24975907 -76897262 + AT_rich Low_complexity Low_complexity 1 21 0 2172 148 8 8 chr13 24977610 24977969 -76895200 - L1MB3 LINE L1 -3 6180 5822 251 305 17 0 chr13 24978226 24978285 -76894884 - MER5A DNA MER1_type -67 122 63 249 280 195 38 chr13 24978315 24978576 -76894593 - L3 LINE CR1 -196 1381 1080 1458 218 82 62 chr13 24978634 24979134 -76894035 + MLT1E3 LTR MaLR 115 624 0 814 293 14 20 chr13 24980607 24980904 -76892265 + L1MC4a LINE L1 5643 5937 -1871 516 261 68 6 chr13 24980980 24981156 -76892013 - LTR33A LTR ERVL 0 523 337 282 225 11 67 chr13 24982084 24982173 -76890996 + LTR16C LTR ERVL 408 491 0 201 233 0 0 chr13 24982404 24982447 -76890722 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 2537 83 0 0 chr13 24982720 24983033 -76890136 - AluSq SINE Alu 0 313 1 1939 141 0 0 chr13 24984129 24984399 -76888770 + AluSx SINE Alu 3 272 -40 272 25 50 0 chr13 24984411 24984451 -76888718 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 1987 164 2 97 chr13 24984624 24984875 -76888294 + MLT1A1 LTR MaLR 1 201 -164 2445 47 0 20 chr13 24984875 24985174 -76887995 - AluY SINE Alu -18 293 1 1987 164 2 97 chr13 24985174 24985325 -76887844 + MLT1A1 LTR MaLR 201 365 0 249 350 83 17 chr13 24985345 24985525 -76887644 + MIR SINE MIR 35 226 -36 224 388 84 14 chr13 24985567 24985925 -76887244 + L2 LINE L2 1896 2278 -1036 662 288 109 43 chr13 24986580 24986948 -76886221 + LTR16C LTR ERVL 100 491 0 2098 128 0 16 chr13 24987128 24987434 -76885735 - AluJb SINE Alu -11 301 1 1897 170 88 19 chr13 24989179 24989544 -76883625 + MLT1B LTR MaLR 1 390 0 2120 128 0 16 chr13 24989771 24990084 -76883085 + AluSx SINE Alu 1 308 -4 502 278 141 43 chr13 24990530 24990857 -76882312 + L2 LINE L2 2616 2974 -340 222 245 0 0 chr13 24990924 24990973 -76882196 + (TAA)n Simple_repeat Simple_repeat 2 50 0 873 307 39 14 chr13 24992756 24993193 -76879976 - L1MC4a LINE L1 -1867 5941 5494 1078 159 0 6 chr13 24993237 24993407 -76879762 - FRAM SINE Alu -7 169 1 39 0 0 0 chr13 24993670 24993709 -76879460 + AT_rich Low_complexity Low_complexity 1 39 0 848 141 0 40 chr13 24994389 24994538 -76878631 - FAM SINE Alu 0 49 1 250 197 106 0 chr13 24995842 24995908 -76877261 + LTR33A LTR ERVL 451 523 0 2255 111 3 0 chr13 24996813 24997120 -76876049 + AluSc SINE Alu 1 308 -1 583 286 25 20 chr13 24997550 24997753 -76875416 - ERVL LTR ERVL -772 4992 4789 2458 141 27 83 chr13 24997901 24998210 -76874959 + L1MA9 LINE L1 5790 6115 -197 674 238 16 0 chr13 24998210 24998332 -76874837 + FLAM_A SINE Alu 1 124 -9 2458 141 27 83 chr13 24998332 24998435 -76874734 + L1MA9 LINE L1 6115 6166 -146 1989 156 0 0 chr13 24998435 24998737 -76874432 + AluSq SINE Alu 1 302 -11 2458 141 27 83 chr13 24998737 24998877 -76874292 + L1MA9 LINE L1 6166 6312 0 329 287 153 0 chr13 24999505 24999714 -76873455 - L1MC4a LINE L1 -1532 4614 4374 381 305 6 12 chr13 24999807 24999971 -76873198 - L1MC4a LINE L1 -2106 4040 3878 2273 100 0 3 chr13 25000666 25000966 -76872203 + AluY SINE Alu 1 299 -12 2452 72 0 7 chr13 25001416 25001721 -76871448 - AluY SINE Alu -8 303 1 2035 157 103 0 chr13 25002616 25002947 -76870222 + MLT1A1 LTR MaLR 1 365 0 859 269 88 0 chr13 25003407 25003645 -76869524 + MIR SINE MIR 2 260 -2 3336 274 60 34 chr13 25003661 25004688 -76868481 - L2 LINE L2 -4 3309 2239 2400 171 44 35 chr13 25004688 25005167 -76868002 - MER66B LTR ERV1 -3 483 1 3336 274 60 34 chr13 25005167 25005626 -76867543 - L2 LINE L2 -1074 2239 1794 198 0 0 0 chr13 25006551 25006573 -76866596 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 414 0 0 0 chr13 25006572 25006618 -76866551 + (GA)n Simple_repeat Simple_repeat 1 46 0 1789 158 0 0 chr13 25006618 25006896 -76866273 - AluJb SINE Alu -34 278 1 306 309 44 97 chr13 25007407 25007727 -76865442 + L2 LINE L2 2804 3106 -166 212 305 0 0 chr13 25007783 25007842 -76865327 + L2 LINE L2 3255 3313 0 27 29 0 0 chr13 25007942 25007976 -76865193 + AT_rich Low_complexity Low_complexity 1 34 0 548 191 63 24 chr13 25009215 25009341 -76863828 + MIR SINE MIR 58 188 -74 203 337 139 10 chr13 25009566 25009656 -76863513 - MIR SINE MIR -34 228 151 1909 119 0 63 chr13 25009656 25009990 -76863179 + AluSx SINE Alu 1 315 0 203 337 139 10 chr13 25009990 25010100 -76863069 - MIR SINE MIR -111 151 1 2081 127 0 3 chr13 25010620 25010911 -76862258 - AluSx SINE Alu -22 290 1 349 254 0 0 chr13 25011020 25011087 -76862082 + MER1B DNA MER1_type 1 67 -270 14469 22 3 1 chr13 25011088 25013270 -76859899 + L1PA3 LINE L1 3722 5907 -248 1890 110 10 53 chr13 25013370 25013671 -76859498 + MER1B DNA MER1_type 52 339 0 1504 160 12 8 chr13 25013988 25014238 -76858931 - AluJo SINE Alu -53 259 9 25 31 0 0 chr13 25014248 25014280 -76858889 + AT_rich Low_complexity Low_complexity 1 32 0 364 248 30 53 chr13 25014907 25015040 -76858129 + MLT1G LTR MaLR 9 138 -457 294 95 0 0 chr13 25015040 25015082 -76858087 + (T)n Simple_repeat Simple_repeat 1 42 0 459 220 52 181 chr13 25015082 25015380 -76857789 + MLT1G LTR MaLR 100 402 -193 1035 277 82 64 chr13 25015381 25016406 -76856763 + L1MEd LINE L1 596 1750 -740 464 260 78 50 chr13 25016858 25017100 -76856069 + MLT1J LTR MaLR 3 251 -260 314 253 75 48 chr13 25017304 25017450 -76855719 + L1MEd LINE L1 2126 2275 -3854 1854 166 67 9 chr13 25017526 25017869 -76855300 - MLT1A1 LTR MaLR 0 365 3 434 296 50 13 chr13 25017904 25018063 -76855106 + MIR SINE MIR 48 212 -50 849 329 124 41 chr13 25018107 25019198 -76853971 - L2 LINE L2 0 3272 1976 1564 152 53 14 chr13 25019198 25019481 -76853688 + AluJo SINE Alu 1 294 -18 849 329 124 41 chr13 25019481 25019629 -76853540 - L2 LINE L2 -1296 1976 1842 21 0 0 0 chr13 25020384 25020405 -76852764 + GC_rich Low_complexity Low_complexity 1 21 0 301 281 6 34 chr13 25020618 25020796 -76852373 + G-rich Low_complexity Low_complexity 2 174 0 264 223 125 54 chr13 25021990 25022102 -76851067 - L2 LINE L2 -1 3312 3193 242 304 0 14 chr13 25022475 25022544 -76850625 - Charlie4 DNA MER1_type -2 1959 1892 231 229 16 16 chr13 25022567 25022628 -76850541 + (TATG)n Simple_repeat Simple_repeat 3 63 0 1395 158 89 4 chr13 25022760 25023019 -76850150 - AluJo SINE Alu -10 302 22 1518 149 0 78 chr13 25023257 25023566 -76849603 - AluJo SINE Alu -27 285 1 2177 93 37 0 chr13 25023697 25023997 -76849172 - AluY SINE Alu 0 311 1 1356 171 6 73 chr13 25024423 25024738 -76848431 + AluJo SINE Alu 6 299 -13 362 159 79 0 chr13 25027767 25027830 -76845339 + L1ME LINE L1 5454 5521 -643 590 240 49 5 chr13 25027835 25028026 -76845143 + L1MA10 LINE L1 5959 6325 -5 281 310 0 41 chr13 25028321 25028492 -76844677 + G-rich Low_complexity Low_complexity 2 165 0 253 89 0 54 chr13 25028498 25028554 -76844615 + (CGGGG)n Simple_repeat Simple_repeat 5 57 0 1918 120 0 0 chr13 25029440 25029707 -76843462 + AluSx SINE Alu 1 267 -45 827 175 30 48 chr13 25030039 25030235 -76842934 + AluJo SINE Alu 120 312 0 2469 73 6 19 chr13 25030997 25031314 -76841855 - AluSp SINE Alu 0 313 1 283 82 41 41 chr13 25031369 25031418 -76841751 - MER116 DNA Mariner -31 49 1 637 214 16 24 chr13 25032228 25032354 -76840815 + FLAM_C SINE Alu 14 138 -5 580 174 17 17 chr13 25032377 25032492 -76840677 + L1PA12 LINE L1 6054 6168 0 363 212 0 0 chr13 25032514 25032660 -76840509 + (TA)n Simple_repeat Simple_repeat 1 146 0 330 255 0 47 chr13 25032699 25032795 -76840374 - L1MC4 LINE L1 -1339 6703 6611 2162 91 3 11 chr13 25032795 25033080 -76840089 - AluSc SINE Alu -26 283 1 348 198 198 0 chr13 25033311 25033407 -76839762 - MER112 DNA MER1_type -5 255 141 498 231 0 0 chr13 25033634 25033725 -76839444 - MER58B DNA MER1_type 0 341 251 1238 183 77 31 chr13 25033727 25034050 -76839119 + L1MA9 LINE L1 5966 6303 -9 1193 171 49 53 chr13 25034062 25034325 -76838844 - MER58B DNA MER1_type -78 263 2 363 196 16 35 chr13 25035029 25035274 -76837895 + AluJo SINE Alu 1 302 0 267 340 0 20 chr13 25035947 25036047 -76837122 + CT-rich Low_complexity Low_complexity 6 103 0 24 53 0 0 chr13 25036624 25036662 -76836507 + AT_rich Low_complexity Low_complexity 1 38 0 655 248 55 30 chr13 25036788 25036990 -76836179 - L2 LINE L2 0 3313 3107 188 254 64 36 chr13 25037023 25037133 -76836036 - L2 LINE L2 -313 3000 2888 1209 170 24 10 chr13 25037349 25037555 -76835614 - MER6B DNA MER2_type -1 209 1 325 267 53 107 chr13 25037674 25037780 -76835389 + MIR SINE MIR 9 100 -162 824 239 183 56 chr13 25037780 25038173 -76834996 + MLT1J1 LTR MaLR 4 446 0 325 267 53 107 chr13 25038173 25038272 -76834897 + MIR SINE MIR 100 203 -59 27 0 0 0 chr13 25038283 25038310 -76834859 + AT_rich Low_complexity Low_complexity 1 27 0 2212 120 0 0 chr13 25038411 25038711 -76834458 - AluSx SINE Alu -12 300 1 2219 130 0 0 chr13 25039060 25039367 -76833802 - AluSx SINE Alu -5 307 1 4436 115 48 0 chr13 25040046 25040630 -76832539 - LTR9 LTR ERV1 0 612 1 688 313 117 21 chr13 25040911 25041111 -76832058 - L2 LINE L2 -4 3309 3065 273 29 0 0 chr13 25041111 25041145 -76832024 + (TG)n Simple_repeat Simple_repeat 2 35 0 688 313 117 21 chr13 25041145 25041270 -76831899 - L2 LINE L2 -248 3065 2953 312 246 0 0 chr13 25042215 25042276 -76830893 - Charlie1 DNA MER1_type -2663 98 38 435 266 30 75 chr13 25042323 25042522 -76830647 - L2 LINE L2 -311 3002 2813 257 264 0 0 chr13 25042553 25042606 -76830563 + MIR SINE MIR 209 261 -1 1354 258 79 77 chr13 25042688 25042792 -76830377 - L2 LINE L2 -1550 1764 1662 2297 89 3 0 chr13 25042792 25043084 -76830085 + AluSp SINE Alu 1 293 -20 1354 258 79 77 chr13 25043084 25043747 -76829422 - L2 LINE L2 -1652 1662 995 312 209 302 8 chr13 25044084 25044213 -76828956 + MIR SINE MIR 91 257 -5 2076 112 14 7 chr13 25045044 25045330 -76827839 - AluSx SINE Alu -24 288 1 927 144 7 20 chr13 25045354 25045507 -76827662 + L1MB3 LINE L1 5685 5835 -348 1897 197 103 7 chr13 25045648 25046055 -76827114 - MER82 DNA MER2_type -2 651 206 1001 207 5 20 chr13 25046148 25046351 -76826818 - MER82 DNA MER2_type -449 204 5 198 0 0 0 chr13 25046825 25046847 -76826322 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 27 49 0 0 chr13 25047340 25047381 -76825788 + AT_rich Low_complexity Low_complexity 1 41 0 753 236 62 36 chr13 25051341 25051566 -76821603 + MIR SINE MIR 2 232 -30 855 276 17 27 chr13 25051924 25052221 -76820948 + L2 LINE L2 3015 3308 -5 2330 164 6 3 chr13 25052501 25052866 -76820303 + MER47A DNA MER2_type 1 366 0 207 241 37 0 chr13 25052944 25052998 -76820171 - L2 LINE L2 -210 3062 3007 21 0 0 0 chr13 25053236 25053257 -76819912 + AT_rich Low_complexity Low_complexity 1 21 0 459 78 0 0 chr13 25053775 25053839 -76819330 + (TCCA)n Simple_repeat Simple_repeat 2 65 0 265 333 68 0 chr13 25054150 25054267 -76818902 + MIR SINE MIR 72 196 -66 244 348 56 0 chr13 25056982 25057071 -76816098 + L2 LINE L2 2609 2702 -612 243 269 26 13 chr13 25057288 25057366 -76815803 - LTR33A LTR ERVL 0 523 445 311 219 114 57 chr13 25057611 25057716 -76815453 - MLT2E LTR ERVL -486 142 32 246 209 105 23 chr13 25057646 25057732 -76815437 - MLT1J LTR MaLR -340 171 79 * 390 200 0 11 chr13 25057833 25057923 -76815246 - HAL1b LINE L1 -81 1267 1179 2252 88 16 16 chr13 25058045 25058352 -76814817 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 25058415 25058436 -76814733 + AT_rich Low_complexity Low_complexity 1 21 0 700 257 15 0 chr13 25058441 25058634 -76814535 - L1MA3 LINE L1 -10 6295 5963 892 219 75 12 chr13 25058844 25059242 -76813927 - HAL1b LINE L1 -579 769 322 289 187 80 13 chr13 25060055 25060130 -76813039 - MIR SINE MIR -64 144 65 1737 237 58 45 chr13 25060257 25060370 -76812799 - L1MC4a LINE L1 -692 7116 7006 2106 144 0 0 chr13 25060370 25060668 -76812501 - AluSx SINE Alu -14 298 1 1737 237 58 45 chr13 25060668 25061221 -76811948 - L1MC4a LINE L1 -802 7006 6441 25 51 0 0 chr13 25063364 25063403 -76809766 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 25064212 25064241 -76808928 + AT_rich Low_complexity Low_complexity 1 29 0 1914 156 10 0 chr13 25065065 25065354 -76807815 - AluSx SINE Alu -19 293 2 5037 249 67 30 chr13 25065749 25066182 -76806987 + L1MEc LINE L1 27 443 -5772 414 0 0 0 chr13 25066182 25066228 -76806941 + (CA)n Simple_repeat Simple_repeat 2 47 0 5037 249 67 30 chr13 25066228 25068514 -76804655 + L1MEc LINE L1 443 2829 -3386 2040 207 35 41 chr13 25068514 25069022 -76804147 - MLT1D LTR MaLR 0 505 1 5037 249 67 30 chr13 25069022 25069205 -76803964 + L1MEc LINE L1 2829 3004 -3211 389 181 128 0 chr13 25069223 25069317 -76803852 + HERVL40 LTR ERVL 4496 4601 -929 3065 212 56 30 chr13 25069319 25069863 -76803306 + L1MB2 LINE L1 4382 4963 -1183 1441 184 13 93 chr13 25069863 25070260 -76802909 + MLT1A1 LTR MaLR 1 365 0 3065 212 56 30 chr13 25070260 25070678 -76802491 + L1MB2 LINE L1 4963 5369 -777 1596 106 14 0 chr13 25070688 25071077 -76802092 + L1M1 LINE L1 5107 5502 -743 659 115 9 9 chr13 25071074 25071187 -76801982 - L1M1 LINE L1 -666 5634 5522 * 4279 154 24 17 chr13 25071187 25072030 -76801139 + L1MA4 LINE L1 5445 6295 -5 4195 156 23 24 chr13 25072047 25072096 -76801073 + L1MB2 LINE L1 5354 5402 -769 1982 154 0 3 chr13 25072096 25072395 -76800774 + AluJb SINE Alu 1 298 -14 4195 156 23 24 chr13 25072395 25073164 -76800005 + L1MB2 LINE L1 5402 6171 0 1825 32 5 0 chr13 25073193 25073413 -76799756 + L1PA4 LINE L1 5932 6152 -3 183 133 33 0 chr13 25074256 25074286 -76798883 + L2 LINE L2 3226 3256 -16 2296 114 0 0 chr13 25074292 25074599 -76798570 - AluSx SINE Alu -5 307 1 2898 104 32 2 chr13 25075231 25075663 -76797506 - L1PA16 LINE L1 -3 6163 5719 1117 231 114 26 chr13 25076020 25076483 -76796686 - HAL1 LINE L1 -856 1651 1148 1295 267 83 52 chr13 25076512 25077221 -76795948 - HAL1 LINE L1 -1699 808 78 25 31 0 0 chr13 25077308 25077340 -76795829 + AT_rich Low_complexity Low_complexity 1 32 0 2179 123 0 3 chr13 25077340 25077641 -76795528 + AluSx SINE Alu 1 300 -12 192 291 36 18 chr13 25078433 25078488 -76794681 - L2 LINE L2 -10 3303 3248 314 244 44 22 chr13 25078766 25078856 -76794313 - L2 LINE L2 -2 3311 3220 3646 108 25 11 chr13 25079142 25079662 -76793507 + MER1A DNA MER1_type 1 527 0 274 212 271 0 chr13 25080031 25080116 -76793053 + MIR SINE MIR 34 141 -67 1042 194 40 0 chr13 25080512 25080713 -76792456 - MER3 DNA MER1_type 0 209 1 267 31 0 0 chr13 25080911 25080943 -76792226 + (GA)n Simple_repeat Simple_repeat 1 32 0 584 248 17 84 chr13 25082768 25083006 -76790163 - MLT1L LTR MaLR -371 244 23 346 241 0 23 chr13 25083137 25083224 -76789945 - MLT1J LTR MaLR -51 460 376 583 267 54 67 chr13 25083250 25083621 -76789548 - MLT1J2 LTR MaLR -21 429 64 295 273 64 14 chr13 25083711 25083865 -76789304 - MLT1J LTR MaLR -294 194 1 294 125 0 0 chr13 25084139 25084187 -76788982 + (TATG)n Simple_repeat Simple_repeat 4 51 0 1975 175 28 38 chr13 25084208 25084608 -76788561 - MSTD LTR MaLR 0 396 1 471 227 31 23 chr13 25084934 25085062 -76788107 + L2 LINE L2 3185 3313 0 2320 110 0 7 chr13 25085136 25085446 -76787723 - AluSx SINE Alu -4 308 1 2104 120 3 7 chr13 25085900 25086199 -76786970 + AluSg SINE Alu 1 298 -12 303 290 24 93 chr13 25086413 25086661 -76786508 - L2 LINE L2 -376 2938 2708 274 388 0 20 chr13 25087609 25087707 -76785462 - MIR3 SINE MIR -103 105 10 186 338 41 35 chr13 25087736 25087881 -76785288 - L2 LINE L2 -973 2341 2196 203 309 12 24 chr13 25088191 25088275 -76784894 - L2 LINE L2 -4 3268 3186 811 255 45 10 chr13 25088344 25088544 -76784625 - MIR SINE MIR -13 249 43 270 116 0 0 chr13 25088776 25088819 -76784350 + (TG)n Simple_repeat Simple_repeat 2 44 0 223 85 43 21 chr13 25089073 25089120 -76784049 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 384 22 0 0 chr13 25089711 25089756 -76783413 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 1371 48 0 0 chr13 25090050 25090216 -76782953 + L1PA10 LINE L1 6002 6167 -1 2175 94 10 0 chr13 25090442 25090730 -76782439 + AluSx SINE Alu 1 291 -21 1066 139 12 0 chr13 25091428 25091593 -76781576 - FRAM SINE Alu -9 167 1 249 309 211 8 chr13 25092472 25092595 -76780574 + MER5B DNA MER1_type 31 178 0 413 341 30 0 chr13 25093550 25093685 -76779484 - L2 LINE L2 0 3272 3134 202 250 76 43 chr13 25093660 25093752 -76779417 - L2 LINE L2 -931 2383 2289 * 22 0 0 0 chr13 25093844 25093866 -76779303 + AT_rich Low_complexity Low_complexity 1 22 0 354 256 22 0 chr13 25094172 25094262 -76778907 - MIR SINE MIR -123 139 48 191 422 73 0 chr13 25094447 25094556 -76778613 - L2 LINE L2 -16 3256 3140 181 361 106 31 chr13 25094715 25095103 -76778066 - L2 LINE L2 -355 2959 2543 224 319 149 0 chr13 25096758 25096852 -76776317 + L2 LINE L2 3152 3259 -13 2367 65 0 0 chr13 25097078 25097369 -76775800 + AluY SINE Alu 1 291 -20 23 78 0 0 chr13 25098789 25098840 -76774329 + AT_rich Low_complexity Low_complexity 1 51 0 392 135 27 0 chr13 25098840 25098914 -76774255 - L1MB2 LINE L1 -25 6146 6071 362 74 19 0 chr13 25100209 25100263 -76772906 + (CA)n Simple_repeat Simple_repeat 2 56 0 2067 147 34 3 chr13 25100263 25100617 -76772552 + MER47A DNA MER2_type 2 366 0 2378 146 33 24 chr13 25101400 25101819 -76771350 - MSTC LTR MaLR -2 426 4 1172 225 43 7 chr13 25102547 25103001 -76770168 + L1ME LINE L1 5049 5518 -648 543 238 49 5 chr13 25103006 25103197 -76769972 + L1MA10 LINE L1 5959 6325 -5 183 139 28 0 chr13 25104173 25104209 -76768960 - MER5B DNA MER1_type 0 178 142 602 292 44 22 chr13 25104494 25104720 -76768449 - MIR SINE MIR -12 250 20 203 250 0 21 chr13 25105010 25105058 -76768111 - L2 LINE L2 -36 3277 3231 204 194 0 0 chr13 25105248 25105284 -76767885 + CT-rich Low_complexity Low_complexity 1 36 0 421 237 182 67 chr13 25105328 25105674 -76767495 - L2 LINE L2 -102 3211 2826 191 325 129 47 chr13 25105753 25106008 -76767161 + L2 LINE L2 2816 3091 -181 1047 229 47 20 chr13 25106048 25106301 -76766868 - MIR SINE MIR -1 261 2 182 37 37 0 chr13 25106950 25106977 -76766192 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr13 25107073 25107094 -76766075 + (GA)n Simple_repeat Simple_repeat 1 21 0 195 270 14 40 chr13 25107189 25107263 -76765906 + MIR SINE MIR 171 242 -20 22 35 0 0 chr13 25107439 25107468 -76765701 + AT_rich Low_complexity Low_complexity 1 29 0 197 167 24 0 chr13 25108241 25108283 -76764886 - MIR SINE MIR -124 138 96 26 30 0 0 chr13 25108977 25109010 -76764159 + AT_rich Low_complexity Low_complexity 1 33 0 206 265 0 0 chr13 25109530 25109579 -76763590 - L2 LINE L2 -1 3312 3264 731 291 111 55 chr13 25109970 25110608 -76762561 - L2 LINE L2 -1127 2187 1514 184 281 0 18 chr13 25110654 25110711 -76762458 - L2 LINE L2 -1901 1413 1358 1693 121 8 0 chr13 25111295 25111560 -76761609 - L1MA5A LINE L1 -3 6294 6028 212 143 0 20 chr13 25111764 25111775 -76761394 + (TTTTTA)n Simple_repeat Simple_repeat 5 15 -37 1568 141 121 0 chr13 25111775 25112031 -76761138 + AluJo SINE Alu 3 289 -23 212 143 0 20 chr13 25112031 25112040 -76761129 + (TTTTTA)n Simple_repeat Simple_repeat 15 23 -29 2263 97 0 10 chr13 25112040 25112338 -76760831 + AluY SINE Alu 1 295 -16 212 143 0 20 chr13 25112338 25112365 -76760804 + (TTTTTA)n Simple_repeat Simple_repeat 23 52 0 1828 160 6 13 chr13 25112565 25112877 -76760292 + AluJo SINE Alu 1 310 -2 356 201 43 95 chr13 25113341 25113500 -76759669 - MLT1H1 LTR MaLR -398 157 1 556 159 119 32 chr13 25113597 25113723 -76759446 - MLT1E3 LTR MaLR -2 622 486 949 120 15 0 chr13 25113741 25113874 -76759295 + AluSq/x SINE Alu 1 135 -178 1708 136 96 0 chr13 25113875 25114147 -76759022 + AluSx SINE Alu 2 299 -13 1972 134 31 0 chr13 25114370 25114662 -76758507 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr13 25114679 25114700 -76758469 + AT_rich Low_complexity Low_complexity 1 21 0 712 274 11 16 chr13 25115104 25115294 -76757875 + MIR SINE MIR 12 200 -62 441 305 127 20 chr13 25116501 25116698 -76756471 - MIR SINE MIR -43 219 2 749 307 100 24 chr13 25116831 25117212 -76755957 + L3 LINE CR1 1049 1458 -119 200 313 172 16 chr13 25117229 25117357 -76755812 - MIR3 SINE MIR -24 184 37 471 219 53 18 chr13 25117545 25117659 -76755510 + L2 LINE L2 3154 3271 -1 22 56 0 0 chr13 25117955 25117991 -76755178 + AT_rich Low_complexity Low_complexity 1 36 0 304 280 0 43 chr13 25118836 25118929 -76754240 - L2 LINE L2 0 3313 3225 40 0 0 0 chr13 25120046 25120086 -76753083 + AT_rich Low_complexity Low_complexity 1 40 0 18502 35 2 1 chr13 25120086 25123082 -76750087 - L1PA4 LINE L1 -2 6153 3123 573 13 0 0 chr13 25123082 25123159 -76750010 + L1PA4 LINE L1 3060 3136 -3010 2086 130 16 0 chr13 25123558 25123865 -76749304 + AluSx SINE Alu 1 312 0 614 270 57 20 chr13 25125598 25125846 -76747323 + L1MC4a LINE L1 5668 5924 -1884 216 200 22 0 chr13 25127313 25127358 -76745811 + MIR SINE MIR 85 130 -132 1528 185 66 0 chr13 25128095 25128382 -76744787 - AluJo SINE Alu -6 306 1 312 286 95 24 chr13 25128590 25128716 -76744453 + L2 LINE L2 3137 3271 -1 1410 180 129 42 chr13 25129922 25130278 -76742891 + MLT1D LTR MaLR 1 387 -118 2122 129 45 14 chr13 25130279 25130636 -76742533 - L1PB4 LINE L1 0 6156 5789 324 0 0 0 chr13 25132986 25133022 -76740147 + (CA)n Simple_repeat Simple_repeat 2 37 0 243 95 0 5 chr13 25133022 25133061 -76740108 + L1P5 LINE L1 5790 5829 -322 * 3048 105 34 16 chr13 25133059 25133553 -76739616 - L1PB4 LINE L1 -365 5791 5289 582 186 2 1 chr13 25133555 25133669 -76739500 + MLT1D LTR MaLR 251 505 0 434 204 10 0 chr13 25133831 25133934 -76739235 + (TA)n Simple_repeat Simple_repeat 1 104 0 554 224 29 46 chr13 25134182 25134356 -76738813 - LTR1B LTR ERV1 -6 820 650 1076 60 0 0 chr13 25136166 25136300 -76736869 + AluSc SINE Alu 1 134 -175 22 0 0 0 chr13 25136328 25136350 -76736819 + AT_rich Low_complexity Low_complexity 1 22 0 1454 156 27 19 chr13 25137655 25137912 -76735257 - AluJo SINE Alu -17 295 37 493 328 81 0 chr13 25138234 25138420 -76734749 + MIR SINE MIR 5 205 -57 27 0 0 0 chr13 25138771 25138798 -76734371 + AT_rich Low_complexity Low_complexity 1 27 0 598 63 0 0 chr13 25138913 25138992 -76734177 + AluS SINE Alu 1 79 -234 1917 132 3 14 chr13 25139147 25139466 -76733703 - AluSx SINE Alu 0 316 1 490 250 17 0 chr13 25140216 25140332 -76732837 - L1ME3A LINE L1 -18 6152 6035 1117 61 0 0 chr13 25142774 25142905 -76730264 + AluY SINE Alu 1 131 -180 2345 90 3 6 chr13 25142907 25143218 -76729951 + AluY SINE Alu 1 310 -1 2135 131 0 7 chr13 25143636 25143942 -76729227 + AluSq SINE Alu 1 304 -9 2089 121 0 0 chr13 25143947 25144228 -76728941 + AluSq SINE Alu 19 299 -14 7638 27 0 0 chr13 25144269 25145480 -76727689 - L1PA3 LINE L1 0 6155 4944 256 256 12 24 chr13 25146396 25146478 -76726691 + CT-rich Low_complexity Low_complexity 1 81 0 428 267 9 9 chr13 25147370 25147475 -76725694 - MER2 DNA MER2_type -240 105 1 413 238 16 97 chr13 25150262 25150447 -76722722 + L2 LINE L2 3144 3313 0 559 41 165 10 chr13 25151350 25151447 -76721722 + L1MA9 LINE L1 6184 6295 -17 852 206 0 0 chr13 25151673 25151828 -76721341 + AluJb SINE Alu 136 290 -22 186 43 0 0 chr13 25151832 25151855 -76721314 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2379 87 0 0 chr13 25152068 25152367 -76720802 + AluSx SINE Alu 1 299 -13 342 264 72 77 chr13 25152538 25152746 -76720423 - MIR SINE MIR -34 228 22 182 313 199 46 chr13 25153075 25153206 -76719963 + L2 LINE L2 3122 3272 0 2571 53 3 0 chr13 25153232 25153535 -76719634 - AluY SINE Alu -7 304 1 1856 87 28 32 chr13 25153537 25153790 -76719379 - AluSc SINE Alu -22 287 36 2147 119 0 3 chr13 25154089 25154382 -76718787 - AluSq SINE Alu -21 292 1 1902 159 3 0 chr13 25154382 25154678 -76718491 - AluJb SINE Alu -15 297 1 302 278 70 17 chr13 25155032 25155147 -76718022 - MER112 DNA MER1_type -12 248 128 339 85 0 0 chr13 25155349 25155396 -76717773 + (TG)n Simple_repeat Simple_repeat 2 48 0 915 187 0 23 chr13 25156106 25156277 -76716892 - AluJb SINE Alu -9 303 137 390 145 48 0 chr13 25156697 25156780 -76716389 - L1ME4a LINE L1 -38 6083 5997 233 271 113 18 chr13 25157288 25157427 -76715742 + MIR SINE MIR 72 262 0 1936 252 105 28 chr13 25158465 25159283 -76713886 - L1ME2 LINE L1 -19 6145 5265 1882 148 0 26 chr13 25160900 25161204 -76711965 + AluJb SINE Alu 3 298 -14 2659 36 0 3 chr13 25162402 25162711 -76710458 + AluY SINE Alu 1 308 -3 403 256 127 71 chr13 25163149 25163583 -76709586 - L1M2 LINE L1 -5453 1396 417 1922 155 30 6 chr13 25163803 25164138 -76709031 + MER2 DNA MER2_type 2 344 0 213 225 0 0 chr13 25164138 25164178 -76708991 + (TG)n Simple_repeat Simple_repeat 1 40 0 24 53 0 0 chr13 25164181 25164219 -76708950 + AT_rich Low_complexity Low_complexity 1 38 0 1969 171 0 0 chr13 25164416 25164708 -76708461 + AluJb SINE Alu 3 294 -18 361 255 92 21 chr13 25165423 25165564 -76707605 - MIR3 SINE MIR -3 205 55 1041 284 99 2 chr13 25165565 25165970 -76707199 + Tigger8 DNA MER2_type 46 489 -177 1398 204 10 31 chr13 25165987 25166281 -76706888 + AluJo SINE Alu 1 288 -14 22 0 0 0 chr13 25166283 25166305 -76706864 + AT_rich Low_complexity Low_complexity 1 22 0 375 23 0 0 chr13 25167418 25167462 -76705707 + (TG)n Simple_repeat Simple_repeat 2 45 0 2126 124 3 0 chr13 25168793 25169083 -76704086 - AluSx SINE Alu -21 291 1 21 0 0 0 chr13 25170159 25170180 -76702989 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 25170808 25170830 -76702339 + AT_rich Low_complexity Low_complexity 1 22 0 1935 145 0 3 chr13 25171087 25171376 -76701793 - AluJb SINE Alu -24 288 1 1055 131 47 11 chr13 25172735 25172926 -76700243 + L1PA16 LINE L1 5969 6166 0 696 250 52 0 chr13 25173303 25173475 -76699694 + MIR SINE MIR 54 234 -28 387 253 158 41 chr13 25173585 25173806 -76699363 - L3 LINE CR1 -11 1566 1320 556 153 7 29 chr13 25173937 25174074 -76699095 + CT-rich Low_complexity Low_complexity 2 135 0 303 283 99 76 chr13 25174076 25174299 -76698870 - L3 LINE CR1 -295 1282 1055 593 285 117 37 chr13 25174385 25174683 -76698486 - L3 LINE CR1 -737 840 519 1784 159 25 0 chr13 25175565 25175841 -76697328 - AluJo SINE Alu -29 283 1 1929 149 0 10 chr13 25176627 25176928 -76696241 + AluSg SINE Alu 1 298 -12 382 258 21 10 chr13 25176928 25177025 -76696144 - MER5A DNA MER1_type -54 135 38 4149 190 48 14 chr13 25177132 25178218 -76694951 + L1MB7 LINE L1 5043 6175 -9 2247 114 13 0 chr13 25178380 25178688 -76694481 + AluSx SINE Alu 1 312 0 1050 154 6 11 chr13 25178971 25179146 -76694023 + AluJb SINE Alu 137 310 -2 2021 115 0 4 chr13 25182392 25182697 -76690472 - AluSc SINE Alu 0 306 3 1657 207 84 22 chr13 25183017 25183481 -76689688 - Charlie4a DNA MER1_type -4 504 12 215 269 26 0 chr13 25183529 25183607 -76689562 + A-rich Low_complexity Low_complexity 5 84 0 26 50 0 0 chr13 25184495 25184535 -76688634 + AT_rich Low_complexity Low_complexity 1 40 0 349 180 279 9 chr13 25184636 25184747 -76688422 - MIR SINE MIR -74 188 48 354 206 227 14 chr13 25184811 25184952 -76688217 - MIR SINE MIR -44 218 48 983 183 0 11 chr13 25185094 25185269 -76687900 + FRAM SINE Alu 1 172 -4 21 0 0 0 chr13 25185288 25185309 -76687860 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 25185547 25185579 -76687590 + AT_rich Low_complexity Low_complexity 1 32 0 308 143 0 0 chr13 25185709 25185758 -76687411 - L2 LINE L2 0 3313 3265 26 50 0 0 chr13 25186458 25186498 -76686671 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 25187275 25187297 -76685872 + AT_rich Low_complexity Low_complexity 1 22 0 1824 176 92 36 chr13 25187884 25188362 -76684807 - MLT1D LTR MaLR 0 505 1 1232 84 11 0 chr13 25188384 25188562 -76684607 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 408 40 0 0 chr13 25188563 25188613 -76684556 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 2039 136 0 3 chr13 25188613 25188899 -76684270 - AluSx SINE Alu -27 285 1 189 0 0 0 chr13 25189104 25189125 -76684044 + (TA)n Simple_repeat Simple_repeat 1 21 0 337 228 323 6 chr13 25189397 25189564 -76683605 - MIR SINE MIR 0 262 43 37 23 0 0 chr13 25190240 25190284 -76682885 + AT_rich Low_complexity Low_complexity 1 44 0 1882 143 29 76 chr13 25191034 25191454 -76681715 - L1MC2 LINE L1 -17 6327 5928 756 160 16 0 chr13 25191575 25191700 -76681469 - AluJ SINE Alu -6 306 180 337 176 206 0 chr13 25191721 25191789 -76681380 - AluJ SINE Alu -177 125 44 298 208 115 10 chr13 25192626 25192722 -76680447 + MIR SINE MIR 87 192 -70 2433 119 5 30 chr13 25192750 25192824 -76680345 - THE1B LTR MaLR 0 364 290 2217 113 0 3 chr13 25192824 25193126 -76680043 + AluSx SINE Alu 1 301 -11 2433 119 5 30 chr13 25193126 25193422 -76679747 - THE1B LTR MaLR -74 290 3 256 221 65 39 chr13 25193466 25193543 -76679626 - L3 LINE CR1 -890 687 609 234 318 163 50 chr13 25194128 25194490 -76678679 - L2 LINE L2 -60 3212 2810 210 340 170 23 chr13 25194529 25194876 -76678293 - L2 LINE L2 -648 2666 2269 187 403 52 13 chr13 25194865 25195019 -76678150 - L3 LINE CR1 -1351 226 67 * 413 283 86 20 chr13 25195322 25195474 -76677695 + MIR SINE MIR 26 187 -75 21 36 0 0 chr13 25196890 25196918 -76676251 + AT_rich Low_complexity Low_complexity 1 28 0 1705 129 57 18 chr13 25198671 25198951 -76674218 - AluSx SINE Alu -21 291 1 23 33 0 0 chr13 25199095 25199125 -76674044 + AT_rich Low_complexity Low_complexity 1 30 0 363 327 52 20 chr13 25199129 25199160 -76674009 - MIR3 SINE MIR -25 183 154 1951 140 0 3 chr13 25199160 25199445 -76673724 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr13 25199445 25199470 -76673699 + (CAT)n Simple_repeat Simple_repeat 2 26 0 363 327 52 20 chr13 25199470 25199590 -76673579 - MIR3 SINE MIR -53 155 26 2106 134 0 7 chr13 25199911 25200217 -76672952 - AluSx SINE Alu -8 304 1 433 250 32 8 chr13 25201277 25201401 -76671768 + L1MB3 LINE L1 6048 6174 -9 28 0 0 0 chr13 25203875 25203903 -76669266 + AT_rich Low_complexity Low_complexity 1 28 0 206 219 16 0 chr13 25204204 25204268 -76668901 + (CATA)n Simple_repeat Simple_repeat 2 66 0 236 189 82 98 chr13 25204855 25204888 -76668281 - L1MA4A LINE L1 -2 6301 6269 1996 125 3 3 chr13 25204888 25205175 -76667994 + AluY SINE Alu 1 287 -24 236 189 82 98 chr13 25205175 25205192 -76667977 - L1MA4A LINE L1 -34 6269 5965 1830 182 46 36 chr13 25205192 25205583 -76667586 - L1PB4 LINE L1 -24 6132 5738 1024 307 111 28 chr13 25205588 25206249 -76666920 + L2 LINE L2 2329 3034 -238 26 30 0 0 chr13 25206303 25206336 -76666833 + AT_rich Low_complexity Low_complexity 1 33 0 1729 183 0 3 chr13 25206346 25206631 -76666538 - AluJo SINE Alu -28 284 1 2301 108 0 0 chr13 25206901 25207198 -76665971 + AluSg SINE Alu 1 297 -13 6316 78 17 25 chr13 25207312 25207982 -76665187 + L1PA10 LINE L1 5096 5756 -412 2157 117 0 10 chr13 25207982 25208280 -76664889 + AluSg SINE Alu 1 295 -15 6316 78 17 25 chr13 25208280 25208690 -76664479 + L1PA10 LINE L1 5756 6168 0 33 0 0 0 chr13 25208820 25208853 -76664316 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 25209282 25209303 -76663866 + AT_rich Low_complexity Low_complexity 1 21 0 563 125 28 28 chr13 25210010 25210154 -76663015 + GA-rich Low_complexity Low_complexity 1 144 0 252 300 0 0 chr13 25210415 25210505 -76662664 + T-rich Low_complexity Low_complexity 1 90 0 35 54 0 0 chr13 25211547 25211603 -76661566 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 25211954 25211986 -76661183 + AT_rich Low_complexity Low_complexity 1 32 0 435 209 0 0 chr13 25212050 25212155 -76661014 + (TA)n Simple_repeat Simple_repeat 1 105 0 2077 104 7 27 chr13 25212481 25212780 -76660389 + AluSx SINE Alu 1 293 -19 228 135 0 0 chr13 25213224 25213261 -76659908 + tRNA-Lys-AAG tRNA tRNA 3 39 -37 663 133 149 103 chr13 25214201 25214255 -76658914 - MER3 DNA MER1_type -5 204 154 1514 180 18 25 chr13 25214255 25214533 -76658636 + AluJo SINE Alu 1 276 -36 663 133 149 103 chr13 25214533 25214673 -76658496 - MER3 DNA MER1_type -55 154 1 544 215 19 0 chr13 25214681 25214788 -76658381 + MER5A DNA MER1_type 1 109 -80 21 82 0 0 chr13 25217318 25217367 -76655802 + AT_rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr13 25217828 25217858 -76655311 + AT_rich Low_complexity Low_complexity 1 30 0 1906 112 83 0 chr13 25218052 25218328 -76654841 + AluSx SINE Alu 1 299 -13 23 33 0 0 chr13 25220569 25220599 -76652570 + AT_rich Low_complexity Low_complexity 1 30 0 244 196 36 18 chr13 25221347 25221403 -76651766 + L2 LINE L2 3007 3063 -209 220 193 175 0 chr13 25221515 25221572 -76651597 + L2 LINE L2 3242 3308 -5 2275 102 17 0 chr13 25222243 25222537 -76650632 + AluSx SINE Alu 1 299 -13 256 320 117 10 chr13 25222573 25222676 -76650493 - L2 LINE L2 -1 3271 3158 2251 120 75 35 chr13 25224340 25224765 -76648404 - L1MD1 LINE L1 0 6242 5801 230 327 97 43 chr13 25225267 25225524 -76647645 - L2 LINE L2 -626 2688 2418 186 356 69 0 chr13 25225582 25225669 -76647500 - L2 LINE L2 -1048 2266 2174 355 229 9 16 chr13 25225672 25225789 -76647380 - LTR50 LTR ERVL -236 559 367 296 237 82 0 chr13 25225882 25225979 -76647190 - LTR50 LTR ERVL -673 122 18 2860 6 0 0 chr13 25226031 25226342 -76646827 + AluYa5 SINE Alu 1 311 0 226 183 7 222 chr13 25226402 25226555 -76646614 + L3 LINE CR1 1180 1299 -278 220 333 78 0 chr13 25226594 25226684 -76646485 + L3 LINE CR1 1397 1493 -84 360 280 93 0 chr13 25226691 25226798 -76646371 + L2 LINE L2 3193 3309 -4 196 266 94 0 chr13 25226799 25226863 -76646306 + L3 LINE CR1 1495 1564 -13 2167 106 3 0 chr13 25226997 25227281 -76645888 - AluSg SINE Alu -15 295 11 803 122 0 38 chr13 25227710 25227841 -76645328 + FLAM_C SINE Alu 1 126 -7 225 128 128 0 chr13 25227915 25227962 -76645207 - MIR SINE MIR -72 190 138 4678 114 63 54 chr13 25228333 25228638 -76644531 + Tigger3b DNA MER2_type 1 302 -2726 2184 114 7 3 chr13 25228638 25228937 -76644232 - AluSx SINE Alu -10 302 3 4678 114 63 54 chr13 25228937 25229564 -76643605 + Tigger3b DNA MER2_type 302 942 -289 1912 114 0 15 chr13 25229568 25229841 -76643328 + AluSx SINE Alu 21 289 -23 226 79 79 0 chr13 25229841 25229904 -76643265 + (TA)n Simple_repeat Simple_repeat 1 68 0 267 184 46 35 chr13 25229906 25230080 -76643089 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 1593 122 52 4 chr13 25230094 25230364 -76642805 + Tigger3b DNA MER2_type 950 1232 0 259 210 32 172 chr13 25230414 25230503 -76642666 + MER112 DNA MER1_type 93 153 -107 1515 136 0 117 chr13 25230503 25230843 -76642326 + AluJb SINE Alu 4 306 0 259 210 32 172 chr13 25230843 25230909 -76642260 + MER112 DNA MER1_type 153 227 -33 976 189 6 0 chr13 25230911 25231091 -76642078 - MER58A DNA MER1_type -4 220 40 320 368 22 44 chr13 25231153 25231335 -76641834 + MER5B DNA MER1_type 1 178 0 2387 85 0 3 chr13 25231370 25231677 -76641492 - AluSc SINE Alu -3 306 1 798 150 34 0 chr13 25231706 25231853 -76641316 - L1MA6 LINE L1 -5 6295 6144 304 324 18 0 chr13 25231919 25232030 -76641139 + L1M4 LINE L1 2718 2830 -3316 1293 179 0 0 chr13 25232602 25232809 -76640360 + AluJo SINE Alu 1 207 -105 27 29 0 0 chr13 25232816 25232850 -76640319 + AT_rich Low_complexity Low_complexity 1 34 0 258 353 81 22 chr13 25233274 25233410 -76639759 + L2 LINE L2 3127 3270 -2 355 302 45 64 chr13 25233470 25233675 -76639494 - L1M4 LINE L1 -2461 3685 3485 281 242 0 0 chr13 25233708 25233774 -76639395 - L1M4 LINE L1 -3118 3028 2963 1671 120 0 0 chr13 25234161 25234378 -76638791 - AluSg/x SINE Alu -17 293 77 312 260 67 10 chr13 25234381 25234485 -76638684 - L1M4 LINE L1 -3168 2978 2869 1697 171 19 7 chr13 25234554 25234863 -76638306 + MLT1A1 LTR MaLR 1 313 -52 347 169 56 0 chr13 25234890 25234961 -76638208 + MLT1A1 LTR MaLR 291 365 0 646 181 110 0 chr13 25235217 25235372 -76637797 + MER33 DNA MER1_type 1 172 -152 504 315 40 11 chr13 25235466 25235742 -76637427 + L1ME LINE L1 5535 5818 -303 2147 112 7 16 chr13 25235754 25236058 -76637111 + AluSq SINE Alu 1 301 -12 523 154 107 0 chr13 25236394 25236543 -76636626 + MER33 DNA MER1_type 153 317 -7 21 57 0 0 chr13 25236689 25236724 -76636445 + AT_rich Low_complexity Low_complexity 1 35 0 408 304 24 19 chr13 25237037 25237244 -76635925 + L1MB8 LINE L1 4903 5110 -1036 386 314 31 0 chr13 25237988 25238147 -76635022 + L1MB8 LINE L1 5127 5290 -856 2472 218 95 13 chr13 25238170 25238917 -76634252 - L1ME1 LINE L1 -6 6160 5353 418 338 102 9 chr13 25238932 25239255 -76633914 + L1MB8 LINE L1 5295 5647 -523 2118 108 14 0 chr13 25239676 25239987 -76633182 - AluSx SINE Alu 0 315 1 29 0 0 0 chr13 25239995 25240024 -76633145 + AT_rich Low_complexity Low_complexity 1 29 0 1777 115 36 8 chr13 25240265 25240600 -76632569 + MER61C LTR ERV1 1 434 0 2802 114 20 20 chr13 25242530 25242591 -76630578 - MER83 LTR ERV1 0 448 388 2128 125 45 31 chr13 25242591 25242950 -76630219 + THE1B LTR MaLR 1 364 0 2802 114 20 20 chr13 25242950 25243336 -76629833 - MER83 LTR ERV1 -59 389 1 27 49 0 0 chr13 25245014 25245055 -76628114 + AT_rich Low_complexity Low_complexity 1 41 0 426 248 291 26 chr13 25245261 25245491 -76627678 - L3 LINE CR1 -333 1244 954 2864 133 31 0 chr13 25246872 25247325 -76625844 + LTR24 LTR ERV1 1 467 0 1426 173 100 4 chr13 25247525 25247796 -76625373 + AluJo SINE Alu 1 297 -15 197 393 0 12 chr13 25248249 25248333 -76624836 + MIR SINE MIR 54 136 -72 531 277 78 106 chr13 25248805 25249238 -76623931 - L2 LINE L2 -16 3256 2836 1546 203 103 27 chr13 25249460 25249754 -76623415 + L1MB8 LINE L1 5669 6014 -164 2240 47 27 23 chr13 25249754 25250053 -76623116 - L1PA6 LINE L1 -3 6151 5852 1546 203 103 27 chr13 25250053 25250232 -76622937 + L1MB8 LINE L1 6014 6178 0 246 366 53 15 chr13 25251009 25251140 -76622029 - MIR3 SINE MIR -36 172 37 387 338 61 19 chr13 25251503 25251716 -76621453 + L2 LINE L2 2599 2820 -494 1385 140 88 6 chr13 25251727 25252147 -76621022 + LTR19A LTR ERV1 1 486 0 364 324 99 7 chr13 25252192 25252334 -76620835 + L2 LINE L2 2898 3052 -261 198 0 0 0 chr13 25253460 25253482 -76619687 + (CGG)n Simple_repeat Simple_repeat 3 24 0 202 169 31 46 chr13 25253494 25253559 -76619610 + (CGGGG)n Simple_repeat Simple_repeat 5 68 0 27 0 0 0 chr13 25255196 25255223 -76617946 + AT_rich Low_complexity Low_complexity 1 27 0 1904 156 3 7 chr13 25255810 25256112 -76617057 + AluSx SINE Alu 1 301 -11 503 257 108 0 chr13 25257090 25257238 -76615931 + MIR SINE MIR 77 240 -22 213 352 48 9 chr13 25257257 25257362 -76615807 - L2 LINE L2 -16 3297 3189 24 0 0 0 chr13 25257643 25257667 -76615502 + AT_rich Low_complexity Low_complexity 1 24 0 1762 157 3 7 chr13 25257668 25257955 -76615214 - AluJb SINE Alu -26 286 1 1048 177 52 5 chr13 25259376 25259568 -76613601 + MER20 DNA MER1_type 19 219 0 2184 252 61 46 chr13 25259827 25260692 -76612477 - L1MEc LINE L1 -4273 2123 1233 198 118 0 0 chr13 25260692 25260726 -76612443 + (CTCA)n Simple_repeat Simple_repeat 3 36 0 2184 252 61 46 chr13 25260726 25261430 -76611739 - L1MEc LINE L1 -5163 1233 541 576 246 199 9 chr13 25261487 25261698 -76611471 - L1MEc LINE L1 -6046 350 100 204 312 148 52 chr13 25262125 25262603 -76610566 - L2 LINE L2 -656 2658 2135 198 272 132 52 chr13 25262688 25262824 -76610345 + MER5A DNA MER1_type 43 189 0 225 266 87 34 chr13 25262982 25263189 -76609980 - L1ME4a LINE L1 -4 6117 5900 433 275 201 36 chr13 25263265 25263378 -76609791 - L1MC4a LINE L1 -94 6027 5934 1796 139 77 0 chr13 25263378 25263665 -76609504 - AluSx SINE Alu -3 309 1 433 275 201 36 chr13 25263665 25263962 -76609207 - L1MC4a LINE L1 -187 5934 5597 496 318 71 38 chr13 25265397 25265636 -76607533 + MIR SINE MIR 2 248 -14 283 272 76 0 chr13 25265653 25265745 -76607424 - L1ME4a LINE L1 -458 5663 5565 284 311 88 20 chr13 25266050 25266198 -76606971 - MIR SINE MIR -46 216 59 765 208 0 0 chr13 25266621 25266751 -76606418 - FLAM_A SINE Alu -3 130 1 216 268 18 36 chr13 25266904 25266960 -76606209 + L2 LINE L2 3168 3222 -50 204 97 0 0 chr13 25267585 25267616 -76605553 + (TTTTTA)n Simple_repeat Simple_repeat 3 33 0 235 273 91 11 chr13 25268117 25268205 -76604964 - L2 LINE L2 0 3313 3219 200 333 121 0 chr13 25268398 25268530 -76604639 + L2 LINE L2 1949 2096 -1218 2349 78 0 3 chr13 25268698 25268992 -76604177 - AluY SINE Alu -18 293 1 1186 263 75 71 chr13 25269697 25270741 -76602428 - L1MC4 LINE L1 -1 8041 7006 629 266 61 76 chr13 25270782 25271124 -76602045 - L1MC4 LINE L1 -944 7098 6762 865 276 70 13 chr13 25271267 25272461 -76600708 - L1MC4a LINE L1 -12 7796 6546 2075 115 21 0 chr13 25272667 25272955 -76600214 - AluSx SINE Alu -18 294 1 438 221 0 0 chr13 25274619 25274705 -76598464 - Tigger5 DNA MER2_type -1 2322 2237 322 200 0 0 chr13 25274714 25274769 -76598400 - Tigger5 DNA MER2_type -2268 55 1 337 230 163 7 chr13 25275313 25275448 -76597721 - MIR SINE MIR -15 247 92 2200 119 10 3 chr13 25275807 25276109 -76597060 - AluSx SINE Alu -8 304 1 377 223 159 64 chr13 25276190 25276410 -76596759 - L1ME4a LINE L1 -56 6065 5825 556 261 48 0 chr13 25276519 25276684 -76596485 - L2 LINE L2 -262 3051 2879 27 62 0 0 chr13 25278257 25278305 -76594864 + AT_rich Low_complexity Low_complexity 1 48 0 216 301 87 19 chr13 25285459 25285562 -76587607 - MIR SINE MIR -91 171 62 1133 211 155 4 chr13 25285592 25285843 -76587326 + Tigger7 DNA MER2_type 2 290 -2197 581 191 0 0 chr13 25285820 25285914 -76587255 + Tigger7 DNA MER2_type 2397 2490 -1 * 2330 97 0 0 chr13 25286161 25286459 -76586710 - AluSx SINE Alu -14 298 1 1588 188 42 27 chr13 25286844 25287146 -76586023 + MER58B DNA MER1_type 1 310 -2110 1852 125 81 36 chr13 25287146 25287505 -76585664 - THE1C LTR MaLR 0 375 1 1588 188 42 27 chr13 25287505 25287538 -76585631 + MER58B DNA MER1_type 310 341 0 863 164 0 0 chr13 25288272 25288394 -76584775 - FLAM_C SINE Alu -21 122 1 678 268 85 86 chr13 25288669 25289290 -76583879 - L2 LINE L2 -43 3270 2653 23 68 0 0 chr13 25290076 25290120 -76583049 + AT_rich Low_complexity Low_complexity 1 44 0 561 288 191 50 chr13 25291213 25291675 -76581494 + L3 LINE CR1 435 961 -616 389 326 7 14 chr13 25291726 25291873 -76581296 - MER5A DNA MER1_type -37 152 7 2153 99 7 20 chr13 25291979 25292281 -76580888 + AluSx SINE Alu 1 298 -14 371 244 101 8 chr13 25292769 25292888 -76580281 - MER94 DNA DNA -1 133 4 21 0 0 0 chr13 25294917 25294938 -76578231 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 25295252 25295273 -76577896 + AT_rich Low_complexity Low_complexity 1 21 0 2177 125 0 7 chr13 25295574 25295879 -76577290 + AluSx SINE Alu 4 306 -6 24 0 0 0 chr13 25297260 25297284 -76575885 + AT_rich Low_complexity Low_complexity 1 24 0 938 240 86 1 chr13 25298021 25298256 -76574913 + MIR SINE MIR 10 253 -9 1837 148 21 0 chr13 25298295 25298586 -76574583 - AluSx SINE Alu -15 297 1 572 297 54 18 chr13 25299185 25299407 -76573762 + MIR SINE MIR 15 244 -18 642 133 91 14 chr13 25299669 25299812 -76573357 + L1MB7 LINE L1 6031 6184 0 195 42 0 0 chr13 25299966 25299990 -76573179 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 396 0 0 0 chr13 25301315 25301359 -76571810 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 37 0 0 chr13 25301674 25301701 -76571468 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 346 272 18 9 chr13 25301870 25301984 -76571185 + CT-rich Low_complexity Low_complexity 6 120 0 213 195 0 0 chr13 25301990 25302031 -76571138 + (TG)n Simple_repeat Simple_repeat 2 42 0 1264 159 87 35 chr13 25305080 25305369 -76567800 - L1MC1 LINE L1 -1 6332 6029 650 266 88 39 chr13 25306028 25306333 -76566836 + MER102b DNA MER1_type 22 341 0 291 279 260 9 chr13 25306523 25306742 -76566427 + L3 LINE CR1 317 590 -987 2456 136 67 0 chr13 25306764 25307155 -76566014 - MSTA LTR MaLR -11 417 1 181 348 22 45 chr13 25308017 25308106 -76565063 - L2 LINE L2 -52 3220 3134 556 180 18 9 chr13 25308124 25308235 -76564934 - MER6 DNA MER2_type 0 865 33 190 242 111 92 chr13 25308328 25308481 -76564688 - L2 LINE L2 -248 3024 2869 752 350 81 16 chr13 25308586 25309091 -76564078 + L3 LINE CR1 1010 1547 -30 182 339 0 16 chr13 25309133 25309195 -76563974 + MIR SINE MIR 4 64 -198 350 323 101 0 chr13 25309200 25309358 -76563811 - L1MEd LINE L1 -5468 651 478 2138 106 0 3 chr13 25309651 25309944 -76563225 - AluSq SINE Alu -16 297 6 22 0 0 0 chr13 25310006 25310028 -76563141 + AT_rich Low_complexity Low_complexity 1 22 0 297 226 165 38 chr13 25310307 25310440 -76562729 + L1ME3A LINE L1 5927 6076 -94 349 280 100 14 chr13 25310534 25310783 -76562386 + L1MDa LINE L1 1551 1761 -4621 293 261 119 40 chr13 25310942 25311107 -76562062 - MIR SINE MIR -67 141 2 2885 64 11 5 chr13 25311164 25311537 -76561632 - THE1C LTR MaLR 0 375 1 312 314 71 40 chr13 25312697 25312949 -76560220 + L1MEd LINE L1 20 279 -5840 1737 134 6 111 chr13 25312960 25313004 -76560165 - MLT2D LTR ERVL 0 414 367 369 0 0 0 chr13 25313004 25313045 -76560124 + (TG)n Simple_repeat Simple_repeat 2 42 0 1737 134 6 111 chr13 25313045 25313350 -76559819 - MLT2D LTR ERVL -47 367 102 2346 108 0 0 chr13 25313350 25313655 -76559514 - AluSq SINE Alu -8 305 1 619 264 98 37 chr13 25313657 25313983 -76559186 + L1MEd LINE L1 910 1255 -4864 232 265 71 95 chr13 25314098 25314309 -76558860 + L1ME3A LINE L1 5962 6167 -3 2176 119 6 19 chr13 25314425 25314736 -76558433 + AluSx SINE Alu 1 307 -5 186 43 0 0 chr13 25314782 25314805 -76558364 + (A)n Simple_repeat Simple_repeat 1 23 0 585 236 181 23 chr13 25316270 25316529 -76556640 + L2 LINE L2 3014 3313 0 475 320 31 15 chr13 25316579 25316767 -76556402 + MIR3 SINE MIR 16 207 -1 2118 185 56 23 chr13 25317513 25317993 -76555176 + MLT1D LTR MaLR 1 496 -9 1228 173 70 38 chr13 25318070 25318383 -76554786 + MER33 DNA MER1_type 2 324 0 270 56 0 0 chr13 25319896 25319932 -76553237 + (CA)n Simple_repeat Simple_repeat 2 37 0 205 266 64 85 chr13 25320851 25320945 -76552224 + MER5A DNA MER1_type 29 131 -58 714 130 27 55 chr13 25320949 25321095 -76552074 - L1MC3 LINE L1 0 7785 7644 338 105 163 93 chr13 25321248 25321334 -76551835 - L1MC3 LINE L1 -732 7053 6995 * 439 184 28 73 chr13 25321332 25321441 -76551728 + L1MC3 LINE L1 7649 7752 -33 2337 146 221 116 chr13 25321451 25321878 -76551291 - L1MC3 LINE L1 -115 7670 7289 268 256 35 12 chr13 25321878 25321964 -76551205 - MLT1F1 LTR MaLR -443 124 37 2337 146 221 116 chr13 25321964 25322225 -76550944 - L1MC3 LINE L1 -496 7289 6816 1382 132 37 25 chr13 25322452 25322695 -76550474 + L1MA8 LINE L1 6043 6288 -3 2207 125 0 0 chr13 25323453 25323765 -76549404 + AluSx SINE Alu 1 312 0 687 274 63 30 chr13 25326599 25326836 -76546333 + MIR SINE MIR 18 262 0 210 340 10 0 chr13 25327054 25327151 -76546018 + (TATATG)n Simple_repeat Simple_repeat 1 98 0 310 313 104 10 chr13 25327151 25327343 -76545826 - L1MC4a LINE L1 -1902 5906 5697 3985 146 8 0 chr13 25328891 25329492 -76543677 - L1PA16 LINE L1 -5 6161 5556 377 285 164 6 chr13 25329912 25330077 -76543092 + MIR3 SINE MIR 12 202 -6 284 346 83 28 chr13 25330195 25330412 -76542757 + L2 LINE L2 3044 3272 0 425 258 44 63 chr13 25330612 25330771 -76542398 - MIR SINE MIR -105 157 2 1189 312 129 32 chr13 25330882 25331847 -76541322 + L2 LINE L2 1919 2977 -337 2427 178 44 36 chr13 25331857 25332358 -76540811 + MLT1D LTR MaLR 1 505 0 253 192 0 96 chr13 25332440 25332513 -76540656 + Charlie5 DNA MER1_type 10 75 -2537 346 308 68 51 chr13 25332579 25332813 -76540356 + MLT1K LTR MaLR 99 336 -252 543 255 28 49 chr13 25333002 25333249 -76539920 + MLT1K LTR MaLR 319 560 -28 3122 128 21 21 chr13 25333563 25333614 -76539555 - L1MA8 LINE L1 -1 6290 6240 2090 110 7 17 chr13 25333614 25333914 -76539255 - AluSq SINE Alu -16 297 1 3122 128 21 21 chr13 25333914 25334384 -76538785 - L1MA8 LINE L1 -50 6241 5769 22 0 0 0 chr13 25334400 25334422 -76538747 + AT_rich Low_complexity Low_complexity 1 22 0 2896 135 13 18 chr13 25334556 25335014 -76538155 - L1MA8 LINE L1 -502 5789 5334 512 221 33 33 chr13 25335073 25335195 -76537974 + L2 LINE L2 3192 3313 0 221 304 108 49 chr13 25335209 25335311 -76537858 - L2 LINE L2 -16 3256 3149 21 0 0 0 chr13 25335325 25335346 -76537823 + AT_rich Low_complexity Low_complexity 1 21 0 208 208 42 0 chr13 25336918 25336966 -76536203 + GA-rich Low_complexity Low_complexity 1 50 0 206 291 69 89 chr13 25337132 25337335 -76535834 + L2 LINE L2 3040 3238 -34 1954 160 83 4 chr13 25337708 25338122 -76535047 + MLT1D LTR MaLR 1 495 -10 543 301 71 61 chr13 25338587 25338771 -76534398 + HAL1 LINE L1 962 1143 -1364 1705 191 13 3 chr13 25338771 25339080 -76534089 + AluJo SINE Alu 1 312 0 543 301 71 61 chr13 25339080 25339496 -76533673 + HAL1 LINE L1 1143 1505 -1002 242 284 41 8 chr13 25339501 25339641 -76533528 + L1 LINE L1 3679 3823 -2323 415 309 116 10 chr13 25339985 25340192 -76532977 + MLT1H LTR MaLR 71 299 -250 781 202 0 0 chr13 25340202 25340370 -76532799 + L1P LINE L1 2739 2906 -3240 190 333 130 29 chr13 25340371 25340509 -76532660 + L2 LINE L2 2694 2845 -469 726 240 161 0 chr13 25340879 25341096 -76532073 + MIR SINE MIR 11 262 0 234 232 81 40 chr13 25341116 25341215 -76531954 + L2 LINE L2 3169 3271 -1 2081 107 4 0 chr13 25342525 25342795 -76530374 - AluSx SINE Alu -4 308 38 2348 108 0 3 chr13 25343544 25343850 -76529319 - AluSg SINE Alu -5 305 1 230 262 0 16 chr13 25344125 25344186 -76528983 - HAL1b LINE L1 -95 1253 1194 249 319 106 29 chr13 25344341 25344548 -76528621 - L1MC/D LINE L1 -2084 5724 5502 405 86 0 0 chr13 25344710 25344768 -76528401 + (GA)n Simple_repeat Simple_repeat 1 58 0 318 307 135 62 chr13 25344829 25345376 -76527793 - L1MC/D LINE L1 -1109 5037 4451 1505 251 96 61 chr13 25345440 25346037 -76527132 + MLT2E LTR ERVL 8 628 0 239 252 126 0 chr13 25346561 25346672 -76526497 - L1MC/D LINE L1 -1923 4223 4099 345 24 0 0 chr13 25346741 25346783 -76526386 + (CA)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr13 25346782 25346809 -76526360 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 568 350 38 25 chr13 25347557 25347923 -76525246 - L1MC/D LINE L1 -2988 3158 2788 651 170 59 2 chr13 25348150 25348293 -76524876 - L1MC3 LINE L1 0 7778 6207 1973 251 10 69 chr13 25348296 25349016 -76524153 + L1M4 LINE L1 3203 3879 -2267 1747 199 44 18 chr13 25349009 25349395 -76523774 + L1MC2 LINE L1 5947 6342 -2 * 309 177 16 0 chr13 25350353 25350415 -76522754 + Charlie1a DNA MER1_type 76 138 -1317 3973 210 121 9 chr13 25351130 25351753 -76521416 + Charlie1a DNA MER1_type 149 920 -1841 2370 146 28 25 chr13 25351753 25352116 -76521053 + THE1B LTR MaLR 1 364 0 3973 210 121 9 chr13 25352116 25352457 -76520712 + Charlie1a DNA MER1_type 920 1221 -234 831 159 23 0 chr13 25352532 25352664 -76520505 + FRAM SINE Alu 11 145 -31 676 265 25 0 chr13 25352667 25352829 -76520340 - L1MD2 LINE L1 -208 6151 5986 574 132 0 0 chr13 25352893 25352984 -76520185 - L1MA5 LINE L1 0 6300 6210 570 176 54 38 chr13 25353088 25353212 -76519957 - L1MA9 LINE L1 -24 6288 6167 1510 165 111 7 chr13 25353212 25353376 -76519793 - AluJo SINE Alu -4 308 162 333 0 0 0 chr13 25353376 25353413 -76519756 + (TG)n Simple_repeat Simple_repeat 2 38 0 1510 165 111 7 chr13 25353413 25353527 -76519642 - AluJo SINE Alu -150 162 1 570 176 54 38 chr13 25353527 25353769 -76519400 - L1MA9 LINE L1 -145 6167 5783 192 355 214 0 chr13 25353958 25354178 -76518991 + L2 LINE L2 1890 2156 -1158 2174 108 10 0 chr13 25354212 25354500 -76518669 - AluSx SINE Alu -21 291 1 437 312 60 36 chr13 25355223 25355733 -76517436 - L1MEd LINE L1 -825 1665 1026 195 270 203 0 chr13 25356606 25356680 -76516489 + L2 LINE L2 3173 3261 -11 317 243 179 7 chr13 25357642 25357782 -76515387 + MLT1K LTR MaLR 156 319 -269 491 297 61 12 chr13 25357813 25357978 -76515191 + MLT1K LTR MaLR 409 581 -7 21 0 0 0 chr13 25360022 25360043 -76513126 + AT_rich Low_complexity Low_complexity 1 21 0 690 215 0 0 chr13 25360046 25360167 -76513002 + FLAM_C SINE Alu 2 122 -21 207 69 0 0 chr13 25360179 25360208 -76512961 + (GAAAA)n Simple_repeat Simple_repeat 3 31 0 351 337 92 5 chr13 25361945 25362129 -76511040 - MIR SINE MIR -7 255 56 279 79 0 0 chr13 25363860 25363898 -76509271 + (TG)n Simple_repeat Simple_repeat 1 38 0 597 303 75 34 chr13 25364426 25364720 -76508449 + L3 LINE CR1 917 1222 -355 273 326 72 43 chr13 25364730 25364868 -76508301 - L3 LINE CR1 -7 1570 1429 207 200 0 0 chr13 25365015 25365060 -76508109 + (TA)n Simple_repeat Simple_repeat 2 46 0 559 298 12 29 chr13 25365760 25365931 -76507238 + MIR SINE MIR 15 182 -80 245 380 26 0 chr13 25365947 25366060 -76507109 - MIR SINE MIR -67 141 26 238 194 15 30 chr13 25366073 25366140 -76507029 - MER5A DNA MER1_type 0 189 124 352 231 67 39 chr13 25367529 25367633 -76505536 + MIR SINE MIR 78 184 -78 1019 175 40 0 chr13 25368135 25368312 -76504857 - MER3 DNA MER1_type -23 186 3 311 256 88 24 chr13 25368312 25368379 -76504790 - MER103 DNA DNA -78 88 14 487 250 29 43 chr13 25368657 25368711 -76504458 - MIR3 SINE MIR -3 205 152 1769 172 3 23 chr13 25368711 25369019 -76504150 - AluJb SINE Alu -10 302 1 487 250 29 43 chr13 25369019 25369104 -76504065 - MIR3 SINE MIR -56 152 68 251 246 48 119 chr13 25370021 25370147 -76503022 + MER5A DNA MER1_type 73 189 0 182 169 17 119 chr13 25370104 25370163 -76503006 - MER5A DNA MER1_type -135 54 2 * 1783 186 43 55 chr13 25370615 25370668 -76502501 + MSTD LTR MaLR 1 53 -343 2438 77 0 3 chr13 25370668 25370967 -76502202 + AluSq SINE Alu 1 298 -15 1783 186 43 55 chr13 25370967 25371312 -76501857 + MSTD LTR MaLR 53 394 -2 337 344 8 30 chr13 25371392 25371523 -76501646 + MIR SINE MIR 19 146 -62 294 262 87 32 chr13 25371553 25371679 -76501490 + L2 LINE L2 1912 2044 -1270 226 319 49 92 chr13 25371859 25372207 -76500962 + L2 LINE L2 2150 2482 -832 1401 189 129 30 chr13 25372438 25372841 -76500328 + HsTC2 DNA Tc2 1282 1900 0 853 186 0 51 chr13 25373001 25373178 -76499991 - MER5A DNA MER1_type -21 168 1 249 197 0 0 chr13 25374094 25374170 -76498999 + (CA)n Simple_repeat Simple_repeat 2 77 0 380 321 112 5 chr13 25374444 25374631 -76498538 - MIR SINE MIR -8 254 48 2433 187 72 36 chr13 25374957 25375454 -76497715 - MLT2B2 LTR ERVL 0 515 1 393 22 0 0 chr13 25376386 25376432 -76496737 + (CA)n Simple_repeat Simple_repeat 1 46 0 745 256 56 64 chr13 25377913 25378087 -76495082 + MIR SINE MIR 15 188 -74 2173 201 56 63 chr13 25378087 25378643 -76494526 - MLT2B3 LTR ERVL -2 552 1 745 256 56 64 chr13 25378643 25378718 -76494451 + MIR SINE MIR 188 262 0 1447 167 144 20 chr13 25379553 25379859 -76493310 + MER2 DNA MER2_type 1 344 0 225 0 0 0 chr13 25380150 25380175 -76492994 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2529 58 0 0 chr13 25380243 25380536 -76492633 + AluY SINE Alu 1 293 -18 2404 163 116 15 chr13 25380543 25381002 -76492167 + MLT1D LTR MaLR 1 505 0 1020 172 18 0 chr13 25381041 25381210 -76491959 - AluJb SINE Alu -11 301 130 65 0 0 0 chr13 25381210 25381275 -76491894 + AT_rich Low_complexity Low_complexity 1 65 0 846 119 16 8 chr13 25381275 25381401 -76491768 - AluJb SINE Alu -185 127 1 569 226 116 26 chr13 25382378 25382533 -76490636 + MIR SINE MIR 22 190 -72 326 324 129 4 chr13 25383539 25383780 -76489389 + L2 LINE L2 2449 2719 -595 802 293 58 8 chr13 25383848 25384090 -76489079 + MIR SINE MIR 6 259 -3 1059 201 11 0 chr13 25385087 25385276 -76487893 + MER20 DNA MER1_type 1 191 -28 1732 131 92 3 chr13 25385578 25385860 -76487309 - AluSx SINE Alu -5 307 1 963 173 56 0 chr13 25385918 25386097 -76487072 + MER53 DNA DNA 1 189 0 573 279 30 6 chr13 25386186 25386351 -76486818 + MIR SINE MIR 94 262 0 193 324 29 29 chr13 25386969 25387105 -76486064 - L2 LINE L2 -1215 2099 1964 476 253 67 47 chr13 25387274 25387574 -76485595 + L1MEd LINE L1 918 1223 -4896 1170 187 102 85 chr13 25387635 25388001 -76485168 + MLT1C LTR MaLR 1 465 -103 2581 223 18 18 chr13 25388003 25388600 -76484569 + L1ME1 LINE L1 5568 6164 -2 430 188 47 16 chr13 25388601 25388729 -76484440 + L1ME1 LINE L1 5151 5282 -864 44035 30 21 1 chr13 25388730 25394761 -76478408 + L1PA2 LINE L1 1 6155 0 2455 215 87 36 chr13 25394759 25395488 -76477681 + L1ME1 LINE L1 5296 6059 -107 * 268 200 0 0 chr13 25395490 25395540 -76477629 + L1ME3 LINE L1 6113 6162 0 253 206 0 48 chr13 25395580 25395643 -76477526 + L1MC5 LINE L1 7827 7886 -75 1745 211 98 25 chr13 25395643 25396083 -76477086 + MLT1D LTR MaLR 34 505 0 821 279 134 19 chr13 25396085 25396560 -76476609 + L1ME LINE L1 5236 5764 -398 852 282 64 23 chr13 25396580 25396977 -76476192 + L2 LINE L2 2729 3149 -164 2357 105 0 0 chr13 25396977 25397281 -76475888 + AluSx SINE Alu 1 304 -8 724 138 156 42 chr13 25397282 25397464 -76475705 + THE1C LTR MaLR 185 375 0 280 348 27 0 chr13 25397501 25397613 -76475556 + L2 LINE L2 3199 3313 0 2022 134 7 3 chr13 25398108 25398399 -76474770 - AluSx SINE Alu -20 292 1 234 91 0 0 chr13 25398865 25398898 -76474271 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 188 358 8 50 chr13 25398921 25399041 -76474128 - L2 LINE L2 -2892 422 308 5415 169 21 3 chr13 25399432 25400683 -76472486 - L1MB2 LINE L1 -1 6170 4894 1484 240 54 8 chr13 25400672 25401155 -76472014 - L1MB2 LINE L1 -2907 3239 2735 * 206 274 36 48 chr13 25401374 25401458 -76471711 - MIR3 SINE MIR -1 207 125 2527 217 46 79 chr13 25401652 25401915 -76471254 - L1MC1 LINE L1 0 6333 6071 4120 116 68 11 chr13 25401915 25402572 -76470597 - L1MB2 LINE L1 -31 6140 5446 1142 219 55 45 chr13 25402792 25403187 -76469982 + MLT1E2 LTR MaLR 117 622 -4 399 292 42 8 chr13 25403428 25403548 -76469621 + L2 LINE L2 3146 3269 -3 387 0 0 0 chr13 25403841 25403884 -76469285 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr13 25404684 25404707 -76468462 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 395 182 0 0 chr13 25404872 25404938 -76468231 - MER69 DNA AcHobo -3 2523 2458 2710 32 3 0 chr13 25404938 25405248 -76467921 + AluY SINE Alu 1 311 0 1834 154 9 31 chr13 25405256 25405574 -76467595 + AluJo SINE Alu 1 311 -1 573 212 61 0 chr13 25405602 25405734 -76467435 - MER69 DNA AcHobo -1086 140 1 269 264 28 0 chr13 25405846 25405918 -76467251 - MIR SINE MIR -126 136 63 399 287 129 70 chr13 25406152 25406525 -76466644 + MARNA DNA Mariner 11 405 -181 421 247 230 25 chr13 25406637 25406834 -76466335 - MIR SINE MIR -20 242 3 445 289 30 15 chr13 25407645 25407780 -76465389 + MIR SINE MIR 47 183 -79 * 693 300 64 9 chr13 25407772 25408005 -76465164 + MIR SINE MIR 17 262 0 3834 129 17 5 chr13 25409157 25409747 -76463422 + L1PA15-16 LINE L1 2089 2685 -4164 354 70 0 0 chr13 25409748 25409791 -76463378 + HY3 scRNA scRNA 1 43 -58 371 102 0 0 chr13 25409791 25409840 -76463329 + L1PA15-16 LINE L1 2675 2723 -4126 2075 149 68 11 chr13 25409840 25410195 -76462974 + THE1C LTR MaLR 1 375 0 9038 126 9 54 chr13 25410195 25411685 -76461484 + THE1C-int LTR MaLR 1 1423 -157 1479 218 22 9 chr13 25411702 25412019 -76461150 + L1P LINE L1 3523 3843 -2303 1082 91 19 0 chr13 25412009 25412163 -76461006 + THE1C-int LTR MaLR 1424 1580 0 * 2408 124 47 11 chr13 25412163 25412525 -76460644 + THE1C LTR MaLR 1 375 0 8269 226 19 3 chr13 25412525 25415772 -76457397 + L1PA15-16 LINE L1 2719 6035 -814 12050 99 11 18 chr13 25415774 25417748 -76455421 - L1P3 LINE L1 -4481 1980 2 295 255 107 41 chr13 25417841 25418048 -76455121 + L1ME4a LINE L1 5831 6062 -59 2085 138 0 0 chr13 25418048 25418344 -76454825 - AluSq SINE Alu -17 296 1 295 255 107 41 chr13 25418344 25418407 -76454762 + L1ME4a LINE L1 6062 6119 -2 457 147 0 0 chr13 25419529 25419597 -76453572 + AluS SINE Alu 226 293 -19 288 102 0 0 chr13 25419621 25419670 -76453499 + (TTG)n Simple_repeat Simple_repeat 3 51 0 1678 172 18 0 chr13 25419675 25419954 -76453215 - AluSx SINE Alu -28 284 1 291 204 43 75 chr13 25420280 25420373 -76452796 - MLT1K LTR MaLR -15 573 484 934 287 111 28 chr13 25420420 25420782 -76452387 - MLT1K LTR MaLR -187 401 10 288 77 0 0 chr13 25421262 25421301 -76451868 + (TG)n Simple_repeat Simple_repeat 1 39 0 2299 146 28 2 chr13 25421392 25421818 -76451351 + L1MC3 LINE L1 7342 7778 -7 305 265 39 10 chr13 25421828 25421930 -76451239 - L1ME4a LINE L1 -76 6045 5941 316 200 14 0 chr13 25422019 25422089 -76451080 + MER58 DNA MER1_type 167 237 -104 12361 138 13 10 chr13 25422114 25423423 -76449746 - L1MA2 LINE L1 0 6304 5000 2206 110 0 16 chr13 25423423 25423731 -76449438 - AluSx SINE Alu -9 303 1 12361 138 13 10 chr13 25423731 25425736 -76447433 - L1MA2 LINE L1 -1304 5000 2983 21 0 0 0 chr13 25426193 25426214 -76446955 + AT_rich Low_complexity Low_complexity 1 21 0 4627 127 14 28 chr13 25427194 25428003 -76445166 - L1PA16 LINE L1 -47 6119 5323 5124 63 16 3 chr13 25428003 25428671 -76444498 - L1PA7 LINE L1 -6 6148 5472 12719 92 1 1 chr13 25428679 25430546 -76442623 - L1PA7 LINE L1 -1316 4830 2963 879 27 18 0 chr13 25430586 25430696 -76442473 + L1PA4 LINE L1 6044 6155 0 480 194 10 0 chr13 25430698 25430796 -76442373 - HAL1 LINE L1 -866 1641 1543 313 311 31 19 chr13 25431269 25431430 -76441739 - MLT1H LTR MaLR -270 279 117 198 0 0 0 chr13 25431671 25431693 -76441476 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 850 96 45 39 chr13 25431831 25431987 -76441182 + L1PA6 LINE L1 5996 6152 -2 23 0 0 0 chr13 25431987 25432010 -76441159 + AT_rich Low_complexity Low_complexity 1 23 0 210 247 216 21 chr13 25432104 25432201 -76440968 + MIR SINE MIR 31 146 -116 264 248 20 20 chr13 25432933 25433034 -76440135 + CT-rich Low_complexity Low_complexity 3 103 0 21 0 0 0 chr13 25433045 25433066 -76440103 + AT_rich Low_complexity Low_complexity 1 21 0 1516 209 0 22 chr13 25434953 25435264 -76437905 + AluJo SINE Alu 5 308 -4 203 293 53 0 chr13 25435373 25435448 -76437721 - MIR SINE MIR -26 236 158 * 257 303 40 0 chr13 25435447 25435523 -76437646 + L2 LINE L2 2930 3008 -264 245 278 0 14 chr13 25435833 25435905 -76437264 + CT-rich Low_complexity Low_complexity 2 72 0 266 267 17 0 chr13 25435908 25435968 -76437201 + MIR SINE MIR 1 61 -201 2270 108 0 0 chr13 25436710 25437005 -76436164 + AluSx SINE Alu 1 295 -17 228 273 0 0 chr13 25438151 25438206 -76434963 - L2 LINE L2 -13 3300 3246 954 187 68 90 chr13 25438293 25438671 -76434498 - MLT1A1 LTR MaLR 0 365 1 204 267 0 0 chr13 25439297 25439342 -76433827 + (TTA)n Simple_repeat Simple_repeat 2 46 0 298 251 178 52 chr13 25440172 25440363 -76432806 + MLT1J LTR MaLR 30 244 -267 223 246 0 46 chr13 25440855 25440920 -76432249 + CT-rich Low_complexity Low_complexity 1 62 0 1402 193 71 7 chr13 25440929 25441209 -76431960 - AluJo SINE Alu -14 298 1 872 184 63 29 chr13 25443103 25443310 -76429859 + MER20 DNA MER1_type 6 219 0 2267 143 34 5 chr13 25443548 25443927 -76429242 - MLT1B LTR MaLR 0 390 1 268 139 0 0 chr13 25444052 25444095 -76429074 + L1MA8 LINE L1 6044 6086 -205 507 232 7 7 chr13 25444310 25444448 -76428721 - L1ME3A LINE L1 -13 6157 6020 2327 142 117 17 chr13 25445140 25445732 -76427437 + LTR12 LTR ERV1 1 2212 -226 2036 224 74 60 chr13 25446593 25447303 -76425866 - L1MC5 LINE L1 -52 7909 7181 2037 236 73 21 chr13 25447303 25447867 -76425302 - MLT1E LTR MaLR 0 593 1 2036 224 74 60 chr13 25447867 25448087 -76425082 - L1MC5 LINE L1 -780 7181 6966 247 273 11 23 chr13 25448346 25448434 -76424735 - L1ME3A LINE L1 -541 5643 5557 1351 130 174 105 chr13 25448747 25448836 -76424333 - MSTB LTR MaLR 0 426 345 8634 26 0 0 chr13 25448836 25450618 -76422551 - L1PA2 LINE L1 -2 6153 4369 1351 130 174 105 chr13 25450618 25450919 -76422250 - MSTB LTR MaLR -81 345 9 238 303 126 42 chr13 25451013 25451132 -76422037 - MIR3 SINE MIR -46 162 34 386 321 58 32 chr13 25451329 25451519 -76421650 - MIR SINE MIR -49 213 19 486 0 0 0 chr13 25451519 25451573 -76421596 + (CA)n Simple_repeat Simple_repeat 2 55 0 334 119 0 22 chr13 25452476 25452545 -76420624 - Alu SINE Alu -248 51 1 417 253 18 148 chr13 25452844 25453073 -76420096 + MIR SINE MIR 47 245 -17 267 309 64 36 chr13 25454918 25455028 -76418141 + L2 LINE L2 3200 3312 -1 5088 80 41 25 chr13 25455237 25455964 -76417205 + SVA Other Other 644 1382 -4 25 0 0 0 chr13 25455964 25455989 -76417180 + AT_rich Low_complexity Low_complexity 1 25 0 183 245 0 38 chr13 25456202 25456255 -76416914 + MIR3 SINE MIR 144 194 -14 23 0 0 0 chr13 25456329 25456352 -76416817 + AT_rich Low_complexity Low_complexity 1 23 0 242 204 20 0 chr13 25457406 25457455 -76415714 + MIR SINE MIR 96 145 -117 353 265 87 111 chr13 25457458 25457907 -76415262 - L2 LINE L2 0 3272 2835 371 287 237 14 chr13 25458293 25458761 -76414408 - L2 LINE L2 -242 3030 2458 391 210 37 9 chr13 25459426 25459540 -76413629 + L1ME4a LINE L1 1232 6096 -1 2194 83 14 0 chr13 25459817 25460105 -76413064 + AluY SINE Alu 1 292 -19 244 133 33 44 chr13 25460200 25460290 -76412879 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 2450 50 13 13 chr13 25460449 25460750 -76412419 - AluY SINE Alu -10 301 1 371 298 96 11 chr13 25460776 25460964 -76412205 + L3 LINE CR1 828 1031 -546 1852 161 7 13 chr13 25460992 25461302 -76411867 + AluSx SINE Alu 1 308 -4 27 49 0 0 chr13 25461354 25461395 -76411774 + AT_rich Low_complexity Low_complexity 1 41 0 918 272 110 43 chr13 25461483 25461798 -76411371 - L1MC4a LINE L1 -1854 5954 5662 2505 57 0 0 chr13 25461798 25462095 -76411074 - AluY SINE Alu -14 297 1 918 272 110 43 chr13 25462095 25462386 -76410783 - L1MC4a LINE L1 -2146 5662 5307 208 216 59 0 chr13 25462400 25462451 -76410718 + L2 LINE L2 2769 2822 -492 651 315 4 9 chr13 25462962 25463194 -76409975 + MLT1J LTR MaLR 99 329 -182 384 289 139 29 chr13 25463292 25463565 -76409604 - MLT1H LTR MaLR -15 534 232 768 212 26 78 chr13 25463703 25463934 -76409235 - MER20 DNA MER1_type 0 219 1 414 249 56 63 chr13 25464326 25464646 -76408523 + MLT1H LTR MaLR 71 384 -25 2348 105 0 0 chr13 25464892 25465196 -76407973 + AluSx SINE Alu 1 304 -8 490 310 26 37 chr13 25465335 25465604 -76407565 - L1ME4a LINE L1 -234 5887 5694 22 35 0 0 chr13 25466164 25466193 -76406976 + AT_rich Low_complexity Low_complexity 1 29 0 185 341 0 0 chr13 25467166 25467210 -76405959 - L2 LINE L2 -92 3180 3137 306 276 0 0 chr13 25467382 25467458 -76405711 + L2 LINE L2 3237 3312 -1 245 288 106 42 chr13 25467469 25467705 -76405464 - L2 LINE L2 -367 2947 2697 2532 183 77 20 chr13 25467718 25468302 -76404867 + L1M4 LINE L1 4668 5284 -862 980 150 20 7 chr13 25468302 25468455 -76404714 + FRAM SINE Alu 1 150 -26 933 226 25 5 chr13 25468601 25468805 -76404364 + L1MB2 LINE L1 4670 4877 -1269 4861 159 17 27 chr13 25468819 25469741 -76403428 + L1MB2 LINE L1 5255 6167 -4 1330 186 36 112 chr13 25470430 25470823 -76402346 - MLT1A1 LTR MaLR -2 363 1 203 250 0 33 chr13 25470989 25471049 -76402120 + GA-rich Low_complexity Low_complexity 1 58 0 875 180 67 6 chr13 25471078 25471256 -76401913 - MER5A DNA MER1_type 0 189 1 831 206 23 23 chr13 25471267 25471442 -76401727 + MER5B DNA MER1_type 2 176 -2 379 179 26 0 chr13 25471475 25471553 -76401616 + MER5A DNA MER1_type 25 104 -85 1415 170 64 18 chr13 25471864 25471994 -76401175 + AluJo SINE Alu 1 124 -188 2400 79 0 31 chr13 25471994 25472311 -76400858 + AluSx SINE Alu 1 307 -5 1415 170 64 18 chr13 25472311 25472462 -76400707 + AluJo SINE Alu 124 295 -17 200 128 0 26 chr13 25472761 25472800 -76400369 + (CAA)n Simple_repeat Simple_repeat 1 38 0 933 237 5 14 chr13 25472852 25473067 -76400102 + MIR SINE MIR 1 213 -49 630 154 9 9 chr13 25473148 25473258 -76399911 - FLAM_A SINE Alu -4 138 29 1518 222 221 56 chr13 25473984 25474545 -76398624 + L2 LINE L2 2053 2520 -793 2257 115 0 3 chr13 25474545 25474850 -76398319 - AluSq SINE Alu -8 305 2 1518 222 221 56 chr13 25474850 25475362 -76397807 + L2 LINE L2 2520 3313 0 2280 93 0 13 chr13 25475926 25476227 -76396942 + AluSg SINE Alu 1 297 -13 641 244 86 25 chr13 25476702 25476899 -76396270 - MIR SINE MIR -9 253 45 643 206 202 31 chr13 25477155 25477378 -76395791 - MIR SINE MIR 0 262 2 312 137 0 0 chr13 25477427 25477478 -76395691 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 0 0 0 chr13 25478604 25478646 -76394523 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1109 309 97 27 chr13 25478728 25479331 -76393838 + L2 LINE L2 2404 3044 -269 648 246 14 0 chr13 25479583 25479721 -76393448 - MER97c DNA MER1_type? -944 146 7 922 230 65 103 chr13 25479925 25480191 -76392978 - MLT1I LTR MaLR 0 409 163 7897 35 1 0 chr13 25480191 25481080 -76392089 + L1PA4 LINE L1 5266 6155 0 922 230 65 103 chr13 25481080 25481230 -76391939 - MLT1I LTR MaLR -246 163 9 361 200 279 48 chr13 25481452 25481617 -76391552 + MER105 DNA DNA 1 203 -1 356 346 87 22 chr13 25481864 25482176 -76390993 + L2 LINE L2 2565 2896 -418 389 281 65 54 chr13 25482197 25482457 -76390712 - HAL1 LINE L1 -5 2502 2240 1033 180 0 6 chr13 25482516 25482688 -76390481 + AluJb SINE Alu 129 299 -13 239 256 64 0 chr13 25482708 25482786 -76390383 - HAL1 LINE L1 -366 2141 2059 700 281 181 16 chr13 25482867 25483066 -76390103 - HAL1 LINE L1 -592 1915 1750 17051 99 6 28 chr13 25483066 25484179 -76388990 - L1PA7 LINE L1 -4 6150 5014 2312 100 0 0 chr13 25484179 25484480 -76388689 - AluY SINE Alu -10 301 1 17051 99 6 28 chr13 25484480 25486607 -76386562 - L1PA7 LINE L1 -1140 5014 2963 700 281 181 16 chr13 25486607 25486727 -76386442 - HAL1 LINE L1 -757 1750 1543 352 311 31 19 chr13 25487201 25487362 -76385807 - MLT1H LTR MaLR -270 279 117 303 28 0 0 chr13 25487807 25487843 -76385326 + (CAA)n Simple_repeat Simple_repeat 2 37 0 407 234 76 57 chr13 25487886 25488044 -76385125 + MIR SINE MIR 31 191 -71 264 273 0 40 chr13 25488734 25488833 -76384336 + CT-rich Low_complexity Low_complexity 3 97 0 1562 198 0 29 chr13 25490757 25491070 -76382099 + AluJo SINE Alu 5 308 -4 203 293 53 0 chr13 25491182 25491257 -76381912 - MIR SINE MIR -26 236 158 * 265 349 161 20 chr13 25491256 25491554 -76381615 + L2 LINE L2 2930 3269 -3 245 278 0 14 chr13 25491652 25491724 -76381445 + CT-rich Low_complexity Low_complexity 2 72 0 265 267 17 0 chr13 25491727 25491787 -76381382 + MIR SINE MIR 1 61 -201 2084 138 0 0 chr13 25492529 25492827 -76380342 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr13 25494242 25494262 -76378907 + (A)n Simple_repeat Simple_repeat 1 20 0 346 255 93 47 chr13 25494274 25494339 -76378830 - L1ME4a LINE L1 0 6121 6060 1888 134 79 0 chr13 25494339 25494629 -76378540 + AluSq SINE Alu 1 313 0 346 255 93 47 chr13 25494629 25494841 -76378328 - L1ME4a LINE L1 -61 6060 5831 4767 117 3 18 chr13 25494935 25495644 -76377525 + L1P3 LINE L1 3 700 -5761 31707 114 10 57 chr13 25495934 25502388 -76370781 + L1PA7 LINE L1 12 6151 -3 265 219 14 14 chr13 25502382 25502455 -76370714 - L1ME4a LINE L1 -406 5715 5643 * 23 0 0 0 chr13 25502517 25502540 -76370629 + AT_rich Low_complexity Low_complexity 1 23 0 554 255 76 6 chr13 25505454 25505611 -76367558 + MER5B DNA MER1_type 5 172 -6 998 282 32 51 chr13 25505814 25506286 -76366883 - LTR16B LTR ERVL -1 463 1 536 301 30 12 chr13 25506716 25506882 -76366287 + MER5B DNA MER1_type 2 170 -8 1925 206 61 47 chr13 25507678 25507855 -76365314 + MLT1D LTR MaLR 1 174 -331 2358 94 7 0 chr13 25507855 25508162 -76365007 + AluSp SINE Alu 1 309 -4 1925 206 61 47 chr13 25508162 25508475 -76364694 + MLT1D LTR MaLR 174 498 -7 5073 214 63 68 chr13 25508559 25508931 -76364238 - L1MC4a LINE L1 0 7808 7436 2422 93 0 0 chr13 25508931 25509242 -76363927 - AluY SINE Alu 0 311 1 5073 214 63 68 chr13 25509242 25510414 -76362755 - L1MC4a LINE L1 -372 7436 6272 201 317 81 56 chr13 25511438 25511599 -76361570 - MIR SINE MIR -6 256 92 23 0 0 0 chr13 25511752 25511775 -76361394 + AT_rich Low_complexity Low_complexity 1 23 0 1258 197 38 4 chr13 25512240 25512504 -76360665 - L1MA4 LINE L1 -6 6294 6022 22 35 0 0 chr13 25513176 25513205 -76359964 + AT_rich Low_complexity Low_complexity 1 29 0 944 293 56 68 chr13 25514647 25515176 -76357993 + MLT1K LTR MaLR 11 534 -54 2445 130 28 0 chr13 25515176 25515530 -76357639 - THE1B LTR MaLR 0 364 1 944 293 56 68 chr13 25515530 25515573 -76357596 + MLT1K LTR MaLR 534 576 -12 633 312 55 13 chr13 25517596 25517833 -76355336 + MIR SINE MIR 6 252 -10 2296 144 18 73 chr13 25518242 25518680 -76354489 + MLT2D LTR ERVL 1 414 0 1108 188 47 24 chr13 25520512 25520725 -76352444 - MER20 DNA MER1_type -1 218 1 483 303 108 28 chr13 25520916 25520969 -76352200 + L2 LINE L2 2605 2652 -620 2309 140 6 105 chr13 25520969 25521447 -76351722 + MSTB1 LTR MaLR 2 432 0 483 303 108 28 chr13 25521447 25521832 -76351337 + L2 LINE L2 2652 3079 -193 2083 106 22 0 chr13 25522170 25522468 -76350701 - AluSg SINE Alu 0 304 1 321 269 39 0 chr13 25523521 25523599 -76349570 + L2 LINE L2 3149 3229 -43 348 268 9 18 chr13 25524811 25524923 -76348246 - HsTC2 DNA Tc2 0 1898 1788 554 216 15 30 chr13 25524964 25525098 -76348071 - FLAM_A SINE Alu -1 132 1 475 275 21 7 chr13 25525993 25526135 -76347034 - MIR SINE MIR 0 262 119 1691 153 162 86 chr13 25526135 25526566 -76346603 + MLT1C LTR MaLR 1 464 -3 467 294 34 67 chr13 25528250 25528488 -76344681 + MIR SINE MIR 33 262 0 1551 178 7 21 chr13 25529576 25529863 -76343306 + AluSx SINE Alu 28 310 -2 749 11 11 0 chr13 25530022 25530112 -76343057 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1803 168 26 16 chr13 25531269 25531578 -76341591 + AluJo SINE Alu 1 312 0 751 143 77 50 chr13 25531606 25531788 -76341381 - MER5A DNA MER1_type 0 189 3 207 69 0 0 chr13 25532054 25532083 -76341086 + (A)n Simple_repeat Simple_repeat 1 29 0 374 253 68 56 chr13 25532440 25532602 -76340567 - MER5B DNA MER1_type -14 164 1 242 296 200 9 chr13 25532795 25532910 -76340259 - MIR SINE MIR -106 156 20 23 0 0 29 chr13 25535022 25535033 -76338136 + AT_rich Low_complexity Low_complexity 1 11 -22 1919 138 3 14 chr13 25535033 25535330 -76337839 + AluSx SINE Alu 1 294 -18 23 0 0 29 chr13 25535330 25535352 -76337817 + AT_rich Low_complexity Low_complexity 11 33 0 442 327 108 23 chr13 25535825 25536131 -76337038 + L2 LINE L2 2494 2825 -489 2386 222 66 85 chr13 25536136 25536372 -76336797 + MER21B LTR ERV1 1 240 -623 2112 131 40 37 chr13 25536372 25536746 -76336423 - THE1C LTR MaLR 0 375 1 2386 222 66 85 chr13 25536746 25537324 -76335845 + MER21B LTR ERV1 240 800 -63 370 323 92 51 chr13 25539237 25539553 -76333616 - L2 LINE L2 -15 3257 2929 252 86 0 0 chr13 25539553 25539588 -76333581 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 716 245 126 39 chr13 25542004 25542314 -76330855 + MLT1J LTR MaLR 3 339 -172 261 263 72 26 chr13 25543223 25543375 -76329794 - Charlie7 DNA MER1_type -3 2609 2451 480 284 111 20 chr13 25545435 25545704 -76327465 - L1 LINE L1 -1818 4328 4034 283 202 48 0 chr13 25545831 25545915 -76327254 - L1 LINE L1 -2196 3950 3863 1651 169 6 32 chr13 25545977 25546291 -76326878 - AluJb SINE Alu -6 306 1 465 203 32 96 chr13 25546824 25547011 -76326158 + MER104 DNA MER2_type 3 177 -3 367 319 25 0 chr13 25548338 25548457 -76324712 + L2 LINE L2 3142 3263 -9 544 270 49 5 chr13 25548960 25549145 -76324024 + L1ME LINE L1 5589 5781 -340 207 213 0 21 chr13 25549608 25549655 -76323514 + (CATATA)n Simple_repeat Simple_repeat 4 49 0 23 0 0 0 chr13 25549713 25549736 -76323433 + AT_rich Low_complexity Low_complexity 1 23 0 186 62 0 62 chr13 25549768 25549816 -76323353 + (TTAAA)n Simple_repeat Simple_repeat 1 45 0 234 91 0 0 chr13 25550133 25550166 -76323003 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 1916 155 12 108 chr13 25551235 25551662 -76321507 - MLT1B LTR MaLR 0 390 5 198 118 29 0 chr13 25552615 25552649 -76320520 - L2 LINE L2 -16 3297 3263 616 178 12 0 chr13 25552733 25552848 -76320321 - MER3 DNA MER1_type -100 109 7 302 348 50 7 chr13 25552958 25553099 -76320070 - L3 LINE CR1 -14 1563 1417 12193 29 1 0 chr13 25553371 25554805 -76318364 - L1PA3 LINE L1 -1868 4278 2844 9904 25 0 0 chr13 25554805 25556675 -76316494 + L1PA3 LINE L1 4282 6155 0 2187 105 34 0 chr13 25556896 25557191 -76315978 - AluSx SINE Alu -7 305 1 243 319 0 0 chr13 25557718 25557787 -76315382 - MIR SINE MIR -31 231 163 367 239 171 8 chr13 25557861 25557978 -76315191 - MIR SINE MIR -122 140 5 4010 121 55 63 chr13 25558161 25559432 -76313737 + pTR5 LTR ERV1 281 2295 -143 323 330 52 88 chr13 25559668 25559851 -76313318 - L2 LINE L2 0 3272 3105 1764 169 43 10 chr13 25559851 25560152 -76313017 + AluSx SINE Alu 1 311 -1 323 330 52 88 chr13 25560152 25560298 -76312871 - L2 LINE L2 -167 3105 2955 783 324 76 56 chr13 25560331 25560978 -76312191 + L2 LINE L2 2377 3060 -253 2195 129 3 3 chr13 25561951 25562262 -76310907 + AluSq SINE Alu 1 311 -2 758 282 63 32 chr13 25562311 25562786 -76310383 - L1MDa LINE L1 -4792 1748 1259 541 303 32 83 chr13 25562948 25563181 -76309988 - L1MDa LINE L1 -5253 1468 1260 2123 112 10 3 chr13 25563181 25563477 -76309692 + AluSp SINE Alu 1 298 -15 541 303 32 83 chr13 25563477 25563616 -76309553 - L1MDa LINE L1 -5461 1260 1115 180 0 0 0 chr13 25564106 25564126 -76309043 + (TA)n Simple_repeat Simple_repeat 2 21 0 443 333 17 0 chr13 25564324 25564444 -76308725 + L2 LINE L2 3151 3272 0 252 314 112 37 chr13 25564597 25564785 -76308384 - L2 LINE L2 -525 2789 2588 1862 156 7 0 chr13 25565628 25565942 -76307227 + AluSx SINE Alu 1 316 0 4019 177 49 42 chr13 25566454 25567328 -76305841 + MER49 LTR ERV1 33 912 -11 435 197 114 30 chr13 25567839 25567971 -76305198 - LTR33 LTR ERVL -9 512 370 1163 159 72 120 chr13 25567986 25568182 -76304987 + MLT1D LTR MaLR 1 176 -329 2574 71 0 0 chr13 25568182 25568492 -76304677 + AluY SINE Alu 1 310 -1 1163 159 72 120 chr13 25568492 25568628 -76304541 + MLT1D LTR MaLR 176 317 -188 980 234 122 32 chr13 25568626 25569036 -76304133 + Charlie1b DNA MER1_type 46 492 -31 * 333 314 21 68 chr13 25569070 25569261 -76303908 + MLT1K LTR MaLR 3 184 -404 283 203 29 29 chr13 25569242 25569311 -76303858 + MLT1K LTR MaLR 453 521 -67 * 23 68 0 0 chr13 25569531 25569575 -76303594 + AT_rich Low_complexity Low_complexity 1 44 0 267 260 173 40 chr13 25569849 25570022 -76303147 + L2 LINE L2 3117 3312 -1 239 279 54 39 chr13 25570076 25570205 -76302964 - L2 LINE L2 -188 3084 2954 1824 180 0 6 chr13 25570273 25570584 -76302585 - AluJo SINE Alu -3 309 1 313 290 19 43 chr13 25570807 25570969 -76302200 - L2 LINE L2 -5 3308 3151 245 291 67 15 chr13 25570972 25571106 -76302063 + L1MDa LINE L1 1751 1891 -4649 285 151 0 0 chr13 25571380 25571433 -76301736 + GA-rich Low_complexity Low_complexity 3 55 0 1811 169 20 48 chr13 25571804 25572158 -76301011 + MER2 DNA MER2_type 1 344 0 619 241 79 15 chr13 25575513 25575716 -76297453 + L1MC5 LINE L1 7696 7911 -50 180 111 0 0 chr13 25576308 25576335 -76296834 + (TG)n Simple_repeat Simple_repeat 2 28 0 396 277 21 0 chr13 25576776 25576870 -76296299 + L2 LINE L2 3137 3232 -40 186 245 11 117 chr13 25577397 25577411 -76295758 + L3 LINE CR1 1415 1418 -159 206 250 152 36 chr13 25577411 25577523 -76295646 - MER5B DNA MER1_type 0 178 54 344 278 192 0 chr13 25577724 25577875 -76295294 - MER5A DNA MER1_type -6 183 4 1908 124 0 70 chr13 25577888 25578218 -76294951 + AluJo SINE Alu 4 310 -2 216 0 0 0 chr13 25578479 25578503 -76294666 + (T)n Simple_repeat Simple_repeat 1 24 0 1840 139 3 21 chr13 25580778 25581066 -76292103 - AluSx SINE Alu -2 310 28 322 250 58 0 chr13 25581090 25581194 -76291975 - MIR SINE MIR -31 231 122 23 0 0 0 chr13 25581938 25581961 -76291208 + AT_rich Low_complexity Low_complexity 1 23 0 248 346 85 13 chr13 25583053 25583206 -76289963 - MIR SINE MIR -78 184 21 538 259 53 12 chr13 25583331 25583501 -76289668 + MIR SINE MIR 19 195 -67 2301 103 3 3 chr13 25585995 25586305 -76286864 - AluSg SINE Alu 0 310 1 330 111 0 19 chr13 25589546 25589600 -76283569 + L1PA2 LINE L1 6098 6150 -5 3780 134 31 5 chr13 25590162 25590750 -76282419 - LTR26 LTR ERV1 0 603 1 303 269 134 0 chr13 25590785 25590904 -76282265 - L2 LINE L2 0 3272 3138 2203 121 0 3 chr13 25591267 25591572 -76281597 + AluSg SINE Alu 1 304 -6 1085 182 61 108 chr13 25593629 25594024 -76279145 - MLT1C LTR MaLR 0 467 103 417 39 0 0 chr13 25594371 25594422 -76278747 + (CA)n Simple_repeat Simple_repeat 2 52 0 2351 165 40 2 chr13 25595052 25595457 -76277712 - MLT2B1 LTR ERVL -98 422 3 901 207 107 25 chr13 25596231 25596490 -76276679 - MLT1C LTR MaLR 0 467 182 2048 137 3 13 chr13 25596490 25596803 -76276366 - AluSx SINE Alu -2 310 1 901 207 107 25 chr13 25596803 25596823 -76276346 - MLT1C LTR MaLR -285 182 165 2057 164 40 5 chr13 25596824 25597197 -76275972 + MER50 LTR ERV1 1 386 -348 1187 147 21 11 chr13 25597486 25597676 -76275493 + MER50 LTR ERV1 382 573 -161 1392 49 55 11 chr13 25597676 25597859 -76275310 - AluYa5 SINE Alu -16 295 105 1056 93 21 0 chr13 25597859 25597999 -76275170 + MER50 LTR ERV1 569 711 -23 547 239 31 44 chr13 25597997 25598156 -76275013 - MLT1C LTR MaLR -326 179 23 * 292 21 0 21 chr13 25598841 25598889 -76274280 - AluSp/q SINE Alu 0 303 257 204 125 0 0 chr13 25599156 25599188 -76273981 + (TG)n Simple_repeat Simple_repeat 2 33 0 1975 139 0 17 chr13 25599719 25600033 -76273136 + AluSx SINE Alu 1 309 0 3200 120 52 19 chr13 25600262 25600802 -76272367 + MER34B LTR ERV1 1 558 -7 2089 100 4 11 chr13 25601096 25601401 -76271768 - AluSx SINE Alu 0 309 7 405 0 0 0 chr13 25601413 25601458 -76271711 + (TG)n Simple_repeat Simple_repeat 2 46 0 3438 98 6 2 chr13 25603394 25603899 -76269270 + L1PB2 LINE L1 5666 6172 0 216 97 0 0 chr13 25604017 25604048 -76269121 + (TG)n Simple_repeat Simple_repeat 2 32 0 438 266 135 73 chr13 25604065 25604464 -76268705 - MLT1L LTR MaLR -1 614 191 818 213 46 37 chr13 25605847 25606063 -76267106 - MER20 DNA MER1_type -1 218 1 355 286 126 34 chr13 25606254 25606307 -76266862 + L2 LINE L2 2605 2652 -662 2154 140 6 105 chr13 25606307 25606785 -76266384 + MSTB1 LTR MaLR 2 432 0 355 286 126 34 chr13 25606785 25607056 -76266113 + L2 LINE L2 2652 2959 -355 1817 129 84 19 chr13 25607962 25608272 -76264897 - MER44D DNA MER2_type -9 600 1 269 314 8 32 chr13 25608289 25608413 -76264756 - L2 LINE L2 -182 3090 2970 723 327 44 17 chr13 25608943 25609304 -76263865 + MLT1I LTR MaLR 39 409 0 925 188 41 41 chr13 25610439 25610636 -76262533 - AluJo SINE Alu -7 305 109 589 253 129 10 chr13 25610734 25610928 -76262241 - MER45C DNA AcHobo -724 229 13 31 0 0 0 chr13 25611554 25611585 -76261584 + AT_rich Low_complexity Low_complexity 1 31 0 352 270 132 11 chr13 25611828 25612002 -76261167 + L1ME4a LINE L1 5589 5783 -338 364 223 29 39 chr13 25612010 25612113 -76261056 + MIR SINE MIR 1 102 -160 405 277 93 63 chr13 25612131 25612457 -76260712 - MLT1H LTR MaLR -2 547 96 849 168 90 18 chr13 25612480 25612647 -76260522 - MER20 DNA MER1_type -12 207 29 265 262 193 22 chr13 25612818 25613093 -76260076 + L1ME4a LINE L1 5799 6120 -1 373 255 149 27 chr13 25613349 25613537 -76259632 + L1ME LINE L1 5473 5683 -438 555 277 85 68 chr13 25615653 25616123 -76257046 + MLT1J LTR MaLR 1 478 -33 210 319 123 23 chr13 25616852 25617194 -76255975 + L2 LINE L2 2471 2846 -468 3528 162 31 15 chr13 25617302 25617968 -76255201 - L1MC2 LINE L1 -10 6334 5658 313 350 37 25 chr13 25617985 25618148 -76255021 + L2 LINE L2 2897 3061 -211 2754 20 0 0 chr13 25618306 25618606 -76254563 - AluYb8 SINE Alu -18 300 1 399 312 200 5 chr13 25618834 25619049 -76254120 + MIR SINE MIR 2 258 -4 3818 106 31 30 chr13 25619098 25619740 -76253429 - L1MA3 LINE L1 -158 6147 5505 803 304 90 24 chr13 25619909 25620182 -76252987 + LTR16B LTR ERVL 1 313 -151 3114 122 48 19 chr13 25620182 25620698 -76252471 - LTR26B LTR ERV1 0 531 1 803 304 90 24 chr13 25620698 25620845 -76252324 + LTR16B LTR ERVL 313 449 -15 1541 140 20 48 chr13 25622233 25622444 -76250725 + MER49 LTR ERV1 1 203 -720 2318 105 0 0 chr13 25622444 25622738 -76250431 - AluSx SINE Alu -18 294 1 1541 140 20 48 chr13 25622738 25622819 -76250350 + MER49 LTR ERV1 203 285 -638 392 180 0 77 chr13 25622811 25622926 -76250243 + MER4E LTR ERV1 59 168 -611 * 3033 119 47 43 chr13 25623406 25623741 -76249428 - LTR26B LTR ERV1 0 531 192 2045 124 7 0 chr13 25623741 25624031 -76249138 - AluSq SINE Alu -21 292 1 3033 119 47 43 chr13 25624031 25624224 -76248945 - LTR26B LTR ERV1 -339 192 1 234 345 34 10 chr13 25624646 25624805 -76248364 + MIR SINE MIR 15 228 -34 1118 208 100 20 chr13 25624888 25625035 -76248134 + MLT1B LTR MaLR 23 157 -233 1726 177 3 19 chr13 25625035 25625346 -76247823 + AluSx SINE Alu 1 306 -6 1118 208 100 20 chr13 25625346 25625539 -76247630 + MLT1B LTR MaLR 157 390 0 1591 188 71 6 chr13 25626907 25627075 -76246094 - MSTD LTR MaLR 0 396 240 252 0 0 0 chr13 25627075 25627103 -76246066 + (GA)n Simple_repeat Simple_repeat 1 28 0 1591 188 71 6 chr13 25627103 25627270 -76245899 - MSTD LTR MaLR -156 240 39 10742 125 30 3 chr13 25627271 25629801 -76243368 - L1PA10 LINE L1 0 6168 3570 1673 245 59 65 chr13 25629802 25630713 -76242456 - L1PA12 LINE L1 -4770 2228 37 368 100 25 26 chr13 25630722 25630794 -76242375 - MSTD LTR MaLR -289 76 1 211 321 104 33 chr13 25631044 25631225 -76241944 + MIR3 SINE MIR 1 187 -63 2068 112 7 7 chr13 25631402 25631697 -76241472 - AluSx SINE Alu -17 295 1 522 287 6 24 chr13 25631725 25631892 -76241277 + MLT1J2 LTR MaLR 37 200 -250 * 2185 233 16 21 chr13 25631887 25632453 -76240716 - MER119 DNA MER1_type -16 567 5 520 239 113 50 chr13 25632458 25632697 -76240472 + MLT1J2 LTR MaLR 197 450 0 2180 101 0 36 chr13 25633701 25634007 -76239162 - AluSx SINE Alu -17 295 1 1516 127 72 36 chr13 25634138 25634414 -76238755 - AluJo SINE Alu 0 312 27 1308 77 0 0 chr13 25634737 25634906 -76238263 - AluY SINE Alu -6 305 137 1008 186 90 32 chr13 25634960 25635456 -76237713 + MLT1E3 LTR MaLR 20 624 0 192 163 0 0 chr13 25635695 25635738 -76237431 + (CAG)n Simple_repeat Simple_repeat 2 44 0 817 153 0 36 chr13 25637059 25637196 -76235973 + FLAM_C SINE Alu 2 133 0 605 314 29 14 chr13 25637376 25637512 -76235657 - MIR SINE MIR -22 240 98 406 145 0 84 chr13 25637512 25637595 -76235574 + MER116 DNA Mariner 3 78 -2 605 314 29 14 chr13 25637595 25637668 -76235501 - MIR SINE MIR -164 98 28 925 152 79 0 chr13 25638082 25638260 -76234909 - LTR47A LTR ERVL 0 452 261 58 47 0 0 chr13 25639562 25639648 -76233521 + AT_rich Low_complexity Low_complexity 1 86 0 314 256 0 0 chr13 25639649 25639735 -76233434 + T-rich Low_complexity Low_complexity 1 86 0 1558 159 14 0 chr13 25639766 25640055 -76233114 - L1MA8 LINE L1 -4 6287 5995 208 250 125 0 chr13 25641153 25641217 -76231952 + MIR3 SINE MIR 85 156 -52 260 360 27 27 chr13 25643086 25643197 -76229972 + L2 LINE L2 2223 2333 -981 322 271 76 49 chr13 25644433 25644577 -76228592 + L2 LINE L2 3166 3313 0 543 241 24 111 chr13 25644690 25644897 -76228272 + MIR SINE MIR 73 261 -1 343 213 12 0 chr13 25646454 25646534 -76226635 - MLT1I LTR MaLR -283 126 46 656 151 126 8 chr13 25647459 25647578 -76225591 + FLAM_C SINE Alu 1 133 0 1923 132 10 24 chr13 25647678 25647974 -76225195 - AluSq SINE Alu -21 292 1 454 254 37 75 chr13 25647995 25648263 -76224906 + MIR SINE MIR 3 260 -2 1190 219 0 0 chr13 25648527 25648769 -76224400 + MLT2C1 LTR ERVL 6 247 -150 209 347 21 0 chr13 25649139 25649234 -76223935 + L2 LINE L2 1542 1638 -1676 225 159 0 0 chr13 25649238 25649282 -76223887 + (ATG)n Simple_repeat Simple_repeat 2 45 0 332 347 28 35 chr13 25649315 25649459 -76223710 - MIR SINE MIR -87 175 33 7395 185 21 46 chr13 25649761 25649872 -76223297 + L1MC1 LINE L1 20 132 -6294 2333 136 8 104 chr13 25649872 25649942 -76223227 + MSTB LTR MaLR 2 77 -349 1944 121 7 0 chr13 25649942 25650214 -76222955 + AluSx SINE Alu 30 303 -9 2333 136 8 104 chr13 25650214 25650613 -76222556 + MSTB LTR MaLR 77 426 0 7395 185 21 46 chr13 25650613 25651551 -76221618 + L1MC1 LINE L1 132 1094 -5332 1489 168 4 0 chr13 25651551 25651819 -76221350 + L1MB1 LINE L1 5899 6167 -1 7395 185 21 46 chr13 25651819 25652656 -76220513 + L1MC1 LINE L1 1094 1950 -4476 4601 230 16 19 chr13 25652660 25653975 -76219194 + L1MC1 LINE L1 4080 5390 -1036 1113 140 11 0 chr13 25653987 25654173 -76218996 + L1PA13 LINE L1 5965 6152 -11 515 177 13 92 chr13 25654179 25654421 -76218748 + MLT1C LTR MaLR 160 421 -46 5880 149 24 25 chr13 25654445 25655655 -76217514 + L1MC1 LINE L1 5403 6612 -1 561 304 62 27 chr13 25655913 25656137 -76217032 + MIR SINE MIR 15 246 -16 270 143 243 29 chr13 25656743 25656813 -76216356 + MIR SINE MIR 108 192 -70 225 203 68 17 chr13 25656980 25657039 -76216130 + L2 LINE L2 3226 3287 -26 1504 200 43 7 chr13 25657213 25657493 -76215676 + AluJo SINE Alu 1 290 -22 2851 161 40 9 chr13 25657506 25658078 -76215091 + L1MB3 LINE L1 5579 6168 -15 951 211 83 15 chr13 25659628 25659893 -76213276 + MER4D LTR ERV1 621 903 0 194 360 13 0 chr13 25661184 25661259 -76211910 + L3 LINE CR1 755 830 -747 424 262 161 13 chr13 25661289 25661438 -76211731 + MIR3 SINE MIR 15 185 -23 514 165 40 191 chr13 25661471 25661743 -76211426 + L1MC4 LINE L1 6796 7026 -1016 375 227 82 0 chr13 25661758 25661868 -76211301 + L1MC4 LINE L1 7924 8042 0 532 306 179 32 chr13 25662085 25662464 -76210705 + L3 LINE CR1 1099 1533 -44 24 0 0 0 chr13 25662756 25662780 -76210389 + AT_rich Low_complexity Low_complexity 1 24 0 339 265 22 72 chr13 25662794 25662975 -76210194 + L1M4 LINE L1 4487 4658 -1488 1019 221 53 0 chr13 25663810 25664018 -76209151 - MER58A DNA MER1_type 0 224 6 334 262 151 8 chr13 25664839 25664965 -76208204 - MIR3 SINE MIR -1 207 64 288 299 37 27 chr13 25666538 25666725 -76206444 + HAL1 LINE L1 1616 1804 -703 601 260 15 10 chr13 25666734 25666938 -76206231 + L1MA9 LINE L1 6070 6274 -38 2169 117 0 13 chr13 25666967 25667276 -76205893 + AluSg SINE Alu 1 305 -5 2033 155 3 0 chr13 25667497 25667794 -76205375 - AluSx SINE Alu -14 298 1 325 351 8 15 chr13 25667975 25668106 -76205063 + L2 LINE L2 3182 3311 -2 249 270 135 8 chr13 25668210 25668336 -76204833 + MLT1L LTR MaLR 474 615 0 1593 213 80 8 chr13 25668730 25668943 -76204226 - LTR52 LTR ERVL -1 420 224 201 94 0 0 chr13 25668943 25668975 -76204194 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 1593 213 80 8 chr13 25668975 25669151 -76204018 - LTR52 LTR ERVL -197 224 3 5892 151 16 10 chr13 25669663 25671258 -76201911 - L1PB1 LINE L1 -2 6865 5267 3319 173 80 1 chr13 25671259 25671903 -76201266 - L1PB1 LINE L1 -3412 3450 2737 181 0 69 0 chr13 25671903 25671932 -76201237 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3319 173 80 1 chr13 25671932 25672030 -76201139 - L1PB1 LINE L1 -4125 2737 2648 * 6715 193 167 8 chr13 25672014 25673820 -76199349 - L1PB1 LINE L1 -4765 2098 6 836 325 89 8 chr13 25674169 25674538 -76198631 + MLT1L LTR MaLR 7 405 -210 243 227 34 68 chr13 25674603 25674652 -76198517 + MLT1L LTR MaLR 523 569 -46 1567 137 160 28 chr13 25674652 25675089 -76198080 - LTR54B LTR ERV1 -2 496 2 243 227 34 68 chr13 25675089 25675127 -76198042 + MLT1L LTR MaLR 569 607 -8 460 266 71 13 chr13 25675307 25675461 -76197708 + MLT1H LTR MaLR 180 342 -207 944 286 51 32 chr13 25675639 25676009 -76197160 + MLT1I LTR MaLR 33 409 0 1229 223 129 88 chr13 25676009 25676090 -76197079 - L2 LINE L2 -254 3059 2983 2157 133 33 16 chr13 25676090 25676457 -76196712 - THE1C LTR MaLR -2 373 1 1229 223 129 88 chr13 25676457 25676686 -76196483 - L2 LINE L2 -330 2983 2765 1718 151 14 7 chr13 25676686 25676964 -76196205 - AluJo SINE Alu -32 280 1 1229 223 129 88 chr13 25676964 25677276 -76195893 - L2 LINE L2 -548 2765 2420 425 287 57 29 chr13 25678284 25678538 -76194631 + L2 LINE L2 2760 3018 -254 250 222 63 0 chr13 25678643 25678706 -76194463 - L2 LINE L2 -557 2757 2691 232 175 0 0 chr13 25678701 25678741 -76194428 + L2 LINE L2 3027 3066 -247 * 2742 150 6 8 chr13 25678782 25679250 -76193919 - MER41B LTR ERV1 -39 596 130 298 314 103 21 chr13 25679293 25679615 -76193554 - LTR33 LTR ERVL -156 367 33 309 324 199 12 chr13 25679645 25679901 -76193268 + L2 LINE L2 3001 3304 -9 245 222 19 0 chr13 25679901 25679955 -76193214 + GA-rich Low_complexity Low_complexity 3 57 0 310 354 31 23 chr13 25680152 25680282 -76192887 - MIR SINE MIR -71 191 61 261 0 0 0 chr13 25680924 25680953 -76192216 + (TG)n Simple_repeat Simple_repeat 2 30 0 1172 233 163 96 chr13 25681656 25682209 -76190960 + MLT1G1 LTR MaLR 1 590 -5 419 264 56 71 chr13 25682852 25683049 -76190120 - L2 LINE L2 -3 3310 3117 1561 116 6 142 chr13 25683923 25684298 -76188871 - AluSg1 SINE Alu 0 309 1 188 250 19 39 chr13 25684755 25684807 -76188362 + MIR SINE MIR 47 97 -165 305 267 89 20 chr13 25685928 25686074 -76187095 - MER103 DNA DNA 0 166 11 219 265 88 98 chr13 25687764 25687866 -76185303 - MIR3 SINE MIR -105 103 3 878 93 106 56 chr13 25688081 25688242 -76184927 - MER44D DNA MER2_type -4 701 533 4352 116 52 4 chr13 25688242 25688960 -76184209 - Tigger3(Golem) DNA MER2_type -1 3028 2277 464 169 0 0 chr13 25688953 25689024 -76184145 - Tigger3(Golem) DNA MER2_type -2923 106 36 * 576 250 79 0 chr13 25689084 25689236 -76183933 - MER44D DNA MER2_type -171 438 5 797 234 72 63 chr13 25689246 25689579 -76183590 + MER46C DNA MER2_type 3 338 0 673 235 6 0 chr13 25689608 25689770 -76183399 - HAL1b LINE L1 -7 1341 1179 790 251 118 73 chr13 25689816 25689943 -76183226 - HAL1b LINE L1 -323 1025 905 3622 198 20 66 chr13 25689943 25690959 -76182210 + LTR5 LTR ERVK 1 969 0 790 251 118 73 chr13 25690959 25691340 -76181829 - HAL1b LINE L1 -443 905 494 2762 76 3 0 chr13 25691580 25691934 -76181235 - THE1A LTR MaLR 0 355 1 203 267 0 0 chr13 25691978 25692038 -76181131 + T-rich Low_complexity Low_complexity 2 61 0 345 309 115 7 chr13 25692105 25692244 -76180925 + L2 LINE L2 3160 3313 0 292 250 99 33 chr13 25693555 25693573 -76179596 - L1MA10 LINE L1 -4 6330 6313 3146 212 85 26 chr13 25693573 25694206 -76178963 - L1ME1 LINE L1 -12 6154 5457 1766 160 0 27 chr13 25694206 25694341 -76178828 + AluJo SINE Alu 3 140 -172 2187 81 22 0 chr13 25694341 25694644 -76178525 + AluSc SINE Alu 1 309 0 1766 160 0 27 chr13 25694644 25694801 -76178368 + AluJo SINE Alu 140 288 -24 3146 212 85 26 chr13 25694801 25695017 -76178152 - L1ME1 LINE L1 -709 5457 5255 1786 174 47 20 chr13 25695017 25695426 -76177743 - LTR52 LTR ERVL -1 420 1 1971 123 4 7 chr13 25695482 25695759 -76177410 - AluSq SINE Alu -37 276 1 271 215 46 31 chr13 25696236 25696301 -76176868 - L2 LINE L2 -23 3249 3184 234 143 18 18 chr13 25697114 25697170 -76175999 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 216 269 19 0 chr13 25697199 25697251 -76175918 + GA-rich Low_complexity Low_complexity 1 53 0 564 308 0 0 chr13 25697272 25697439 -76175730 - MIR SINE MIR -32 230 65 230 329 163 50 chr13 25697575 25698055 -76175114 - L2 LINE L2 -773 2541 2008 578 240 130 75 chr13 25700528 25700836 -76172333 - MLT1J LTR MaLR -46 465 141 655 320 123 5 chr13 25700850 25701247 -76171922 + L1MEc LINE L1 90 533 -5586 301 241 0 0 chr13 25701304 25701362 -76171807 + L1MEc LINE L1 615 672 -5447 245 267 63 7 chr13 25701364 25701514 -76171655 + L1MEc LINE L1 1535 1654 -861 449 259 125 51 chr13 25702219 25702404 -76170765 + L1MEc LINE L1 2663 2833 -3296 2127 212 43 25 chr13 25702404 25702914 -76170255 + LTR40a LTR ERVL 1 519 0 449 259 125 51 chr13 25702914 25703318 -76169851 + L1MEc LINE L1 2833 3296 -2833 407 315 45 94 chr13 25704239 25704506 -76168663 + L2 LINE L2 3019 3272 0 1397 237 132 20 chr13 25704832 25705280 -76167889 - MLT1D LTR MaLR 0 505 8 1847 141 42 0 chr13 25706095 25706379 -76166790 + AluSx SINE Alu 1 296 -16 23 0 0 0 chr13 25708027 25708050 -76165119 + AT_rich Low_complexity Low_complexity 1 23 0 205 342 162 0 chr13 25708653 25708770 -76164399 + MIR SINE MIR 32 167 -95 24 0 0 0 chr13 25709302 25709326 -76163843 + AT_rich Low_complexity Low_complexity 1 24 0 241 250 78 0 chr13 25710122 25710186 -76162983 + MIR3 SINE MIR 133 201 -7 5300 155 9 12 chr13 25710397 25711285 -76161884 - MER4D LTR ERV1 -17 886 2 549 224 129 21 chr13 25711468 25711709 -76161460 + LTR37A LTR ERV1 197 421 -5 240 35 0 0 chr13 25711734 25711763 -76161406 + (TG)n Simple_repeat Simple_repeat 1 29 0 2198 137 30 30 chr13 25713007 25713371 -76159798 + THE1B LTR MaLR 1 364 0 300 208 0 0 chr13 25713463 25713516 -76159653 - MER91B DNA MER1_type -137 53 1 402 21 0 0 chr13 25714247 25714294 -76158875 + (TG)n Simple_repeat Simple_repeat 2 48 0 307 280 85 44 chr13 25714998 25715156 -76158013 - MIR SINE MIR -55 207 38 224 295 125 54 chr13 25715681 25715793 -76157376 + L2 LINE L2 3136 3255 -17 25 0 0 0 chr13 25716114 25716139 -76157030 + AT_rich Low_complexity Low_complexity 1 25 0 1281 235 91 20 chr13 25716254 25716595 -76156574 - MLT1A1 LTR MaLR 0 365 1 731 286 109 52 chr13 25716597 25717121 -76156048 - L1MC4a LINE L1 -1836 5972 5419 448 178 262 9 chr13 25717198 25717305 -76155864 + MER45 DNA AcHobo 1448 1581 0 275 301 209 8 chr13 25717561 25717648 -76155521 - L1ME LINE L1 -527 5635 5567 495 0 0 0 chr13 25717648 25717703 -76155466 + (TA)n Simple_repeat Simple_repeat 1 55 0 275 301 209 8 chr13 25717703 25717874 -76155295 - L1ME LINE L1 -595 5567 5325 626 292 89 49 chr13 25717907 25718597 -76154572 - L1ME LINE L1 -939 5207 4546 882 144 0 0 chr13 25718597 25718722 -76154447 + FLAM_C SINE Alu 1 125 -8 204 40 0 0 chr13 25718729 25718754 -76154415 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 626 292 89 49 chr13 25718754 25719116 -76154053 - L1ME LINE L1 -1605 4541 3999 416 345 60 42 chr13 25719122 25719504 -76153665 - MLT1I LTR MaLR -2 407 19 765 295 38 30 chr13 25719614 25720011 -76153158 - L1ME LINE L1 -2268 3878 3476 209 341 77 0 chr13 25720892 25720983 -76152186 + MIR SINE MIR 36 133 -75 700 200 14 98 chr13 25721097 25721312 -76151857 + MER3 DNA MER1_type 6 202 -7 2158 128 7 0 chr13 25723148 25723454 -76149715 + AluSx SINE Alu 1 308 -4 322 135 0 40 chr13 25723471 25723545 -76149624 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 2227 111 7 0 chr13 25723932 25724238 -76148931 + AluY SINE Alu 1 308 -3 180 0 0 0 chr13 25724342 25724362 -76148807 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 236 351 53 47 chr13 25726800 25726971 -76146198 + MIR SINE MIR 77 248 -14 261 320 78 31 chr13 25727538 25727666 -76145503 - L2 LINE L2 0 3272 3139 587 114 13 0 chr13 25727933 25728012 -76145157 + MADE1 DNA Mariner 1 80 0 26 0 0 0 chr13 25729203 25729229 -76143940 + AT_rich Low_complexity Low_complexity 1 26 0 535 255 42 75 chr13 25730194 25730433 -76142736 + L1ME4a LINE L1 5412 5642 -479 420 271 49 42 chr13 25730448 25730592 -76142577 - MIR SINE MIR -70 192 48 888 228 52 77 chr13 25730669 25731072 -76142097 + L1ME4a LINE L1 5710 6102 -19 711 146 28 97 chr13 25731086 25731230 -76141939 + AluJb SINE Alu 2 135 -177 492 299 112 5 chr13 25731317 25731531 -76141638 - MIR SINE MIR 0 262 26 * 643 291 84 0 chr13 25731528 25731741 -76141428 + MIR SINE MIR 5 235 -27 376 296 70 9 chr13 25731799 25731914 -76141255 + MIR SINE MIR 13 134 -128 1517 201 85 13 chr13 25733148 25733466 -76139703 + MER58B DNA MER1_type 1 341 0 1064 169 33 5 chr13 25733474 25733658 -76139511 - MER5A DNA MER1_type 0 189 1 525 263 160 30 chr13 25734118 25734185 -76138984 - MLT1H LTR MaLR 0 555 498 207 0 0 0 chr13 25734185 25734208 -76138961 + (TTG)n Simple_repeat Simple_repeat 2 24 0 525 263 160 30 chr13 25734208 25734520 -76138649 - MLT1H LTR MaLR -57 498 114 1645 148 73 20 chr13 25735256 25735437 -76137732 + L1MB7 LINE L1 5652 5857 -327 2419 144 3 19 chr13 25735437 25735806 -76137363 + MER47A DNA MER2_type 4 366 0 1645 148 73 20 chr13 25735806 25735927 -76137242 + L1MB7 LINE L1 5857 5970 -214 1953 157 49 35 chr13 25735955 25736325 -76136844 - THE1C LTR MaLR 0 375 1 867 199 46 7 chr13 25736705 25736856 -76136313 - FRAM SINE Alu -18 158 2 801 281 23 30 chr13 25736940 25737203 -76135966 - MIR SINE MIR 0 262 2 324 263 12 0 chr13 25737443 25737523 -76135646 - L2 LINE L2 -4 3268 3188 2720 148 16 73 chr13 25737665 25738157 -76135012 - MLT2C2 LTR ERVL 0 464 1 300 291 146 36 chr13 25738529 25738694 -76134475 - MIR3 SINE MIR -3 205 23 197 175 53 53 chr13 25738787 25738844 -76134325 + MIR SINE MIR 87 143 -119 297 337 83 12 chr13 25738851 25738949 -76134220 - MER5A DNA MER1_type 0 189 99 2451 94 0 0 chr13 25738949 25739258 -76133911 - AluSp SINE Alu -4 309 1 297 337 83 12 chr13 25739258 25739328 -76133841 - MER5A DNA MER1_type -90 99 9 198 243 0 108 chr13 25739324 25739398 -76133771 + MIR3 SINE MIR 142 207 -1 * 380 245 21 0 chr13 25739504 25739598 -76133571 - MER94 DNA DNA 0 134 39 2143 103 7 3 chr13 25740041 25740333 -76132836 - AluSg SINE Alu -17 293 1 212 256 0 0 chr13 25740484 25740527 -76132642 - L2 LINE L2 -4 3309 3267 248 267 55 73 chr13 25740775 25740940 -76132229 + L2 LINE L2 3049 3210 -103 534 363 144 5 chr13 25741439 25741808 -76131361 - L3 LINE CR1 -922 655 236 291 43 0 5 chr13 25741892 25741939 -76131230 + MADE1 DNA Mariner 4 38 -42 30 0 0 0 chr13 25741955 25741985 -76131184 + AT_rich Low_complexity Low_complexity 1 30 0 343 65 0 0 chr13 25741985 25742031 -76131138 + MADE1 DNA Mariner 35 80 0 359 310 123 77 chr13 25742035 25742260 -76130909 + L3 LINE CR1 763 1015 -562 2237 125 0 0 chr13 25742260 25742571 -76130598 + AluSx SINE Alu 1 311 -1 359 310 123 77 chr13 25742571 25742735 -76130434 + L3 LINE CR1 1015 1170 -407 763 307 53 0 chr13 25743077 25743305 -76129864 + MIR SINE MIR 2 241 -21 418 290 107 45 chr13 25743311 25743535 -76129634 - MIR SINE MIR -24 238 1 358 301 45 30 chr13 25744608 25744787 -76128382 - MER20B DNA MER1_type 0 219 34 231 88 0 0 chr13 25744934 25744968 -76128201 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1249 188 71 23 chr13 25744971 25745237 -76127932 - AluJo SINE Alu -33 279 1 306 346 68 0 chr13 25745383 25745516 -76127653 + L3 LINE CR1 1169 1310 -267 467 332 62 12 chr13 25745565 25745809 -76127360 + MIR SINE MIR 1 256 -6 236 204 0 37 chr13 25745960 25746014 -76127155 + MLT1L LTR MaLR 9 60 -555 2894 131 41 5 chr13 25746015 25746426 -76126743 - MSTB LTR MaLR 0 426 1 298 154 115 91 chr13 25746796 25746909 -76126260 + MLT1I LTR MaLR 275 549 0 516 275 64 64 chr13 25747701 25747787 -76125382 + MIR SINE MIR 20 105 -157 1875 194 41 22 chr13 25747787 25748154 -76125015 - MLT1A2 LTR MaLR 0 374 1 516 275 64 64 chr13 25748154 25748262 -76124907 + MIR SINE MIR 105 217 -45 330 87 0 0 chr13 25748262 25748308 -76124861 + (TA)n Simple_repeat Simple_repeat 1 46 0 516 275 64 64 chr13 25748308 25748330 -76124839 + MIR SINE MIR 216 237 -25 1121 323 167 23 chr13 25748461 25749430 -76123739 - L3 LINE CR1 -58 1519 367 31724 120 15 72 chr13 25749467 25755981 -76117188 - L1PA7 LINE L1 -2 6152 13 2288 8 0 0 chr13 25756698 25756942 -76116227 - L1PA2 LINE L1 -1 6154 5911 2472 12 0 0 chr13 25756942 25757263 -76115906 + L1P LINE L1 5107 5427 -728 223 329 0 0 chr13 25758737 25758810 -76114359 + (CAG)n Simple_repeat Simple_repeat 3 75 0 367 281 97 23 chr13 25758893 25759110 -76114059 + LTR33A LTR ERVL 275 507 -16 189 349 75 0 chr13 25760900 25761006 -76112163 - MIR SINE MIR -51 211 98 491 200 200 70 chr13 25761452 25761611 -76111558 + L1ME4a LINE L1 5793 5930 -191 1737 180 7 10 chr13 25761611 25761917 -76111252 + AluJo SINE Alu 7 311 -1 491 200 200 70 chr13 25761917 25761960 -76111209 + L1ME4a LINE L1 5930 5966 -155 1421 171 4 17 chr13 25761960 25762199 -76110970 - MER46A DNA MER2_type 0 236 1 491 200 200 70 chr13 25762199 25762280 -76110889 + L1ME4a LINE L1 5966 6114 -7 21 36 0 0 chr13 25762290 25762318 -76110851 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 25762402 25762432 -76110737 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 25762751 25762771 -76110398 + (T)n Simple_repeat Simple_repeat 1 20 0 2294 50 0 57 chr13 25763113 25763448 -76109721 + AluY SINE Alu 1 318 0 264 255 57 92 chr13 25764093 25764234 -76108935 + MIR SINE MIR 123 258 -4 841 173 18 36 chr13 25764423 25764591 -76108578 - MER20 DNA MER1_type -54 165 1 235 241 0 17 chr13 25764801 25764859 -76108310 + L2 LINE L2 2999 3055 -217 463 283 181 22 chr13 25765824 25766050 -76107119 - MIR SINE MIR 0 262 1 701 269 63 36 chr13 25766352 25766575 -76106594 - MIR SINE MIR 0 262 34 390 232 39 126 chr13 25766660 25766867 -76106302 - MER5A DNA MER1_type 0 189 1 297 0 0 0 chr13 25768214 25768247 -76104922 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 271 140 28 chr13 25769358 25769465 -76103704 + L2 LINE L2 3193 3311 -2 1751 200 18 30 chr13 25769556 25770100 -76103069 + MER97c DNA MER1_type? 1 606 -484 3118 191 23 0 chr13 25770262 25770604 -76102565 - L1PA16 LINE L1 -24 6142 5780 357 24 0 0 chr13 25770604 25770646 -76102523 + (TG)n Simple_repeat Simple_repeat 2 43 0 3118 191 23 0 chr13 25770646 25770875 -76102294 - L1PA16 LINE L1 -386 5780 5558 2721 252 39 0 chr13 25770875 25771513 -76101656 - L1ME1 LINE L1 -56 6110 5448 1692 265 75 18 chr13 25771909 25772457 -76100712 - MLT1E LTR MaLR 0 593 15 359 261 346 0 chr13 25772466 25772596 -76100573 + MER96 DNA MER1_type 1 175 0 228 291 87 58 chr13 25772858 25772961 -76100208 + MER5A DNA MER1_type 1 106 -83 2011 120 0 24 chr13 25773837 25774159 -76099010 + AluSx SINE Alu 1 315 0 181 224 52 52 chr13 25777068 25777126 -76096043 - L2 LINE L2 -6 3266 3209 207 0 0 0 chr13 25777448 25777471 -76095698 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2151 139 7 0 chr13 25777491 25777801 -76095368 + AluSx SINE Alu 1 312 0 542 301 46 6 chr13 25777896 25778069 -76095100 + MIR SINE MIR 7 186 -76 2643 107 12 22 chr13 25778236 25778638 -76094531 + L1PA16 LINE L1 5760 6157 -9 814 255 29 31 chr13 25778819 25779242 -76093927 + L1ME3A LINE L1 5721 6131 -31 273 330 126 51 chr13 25780592 25780833 -76092336 + L2 LINE L2 2288 2510 -762 1992 117 125 67 chr13 25780833 25781234 -76091935 + MSTA LTR MaLR 1 424 -4 273 330 126 51 chr13 25781234 25781842 -76091327 + L2 LINE L2 2510 3223 -49 1017 251 5 0 chr13 25781939 25782162 -76091007 + MER58A DNA MER1_type 1 224 0 708 252 105 55 chr13 25782401 25782878 -76090291 + MLT1J LTR MaLR 5 505 -6 2265 179 44 72 chr13 25784320 25784890 -76088279 + MLT2B3 LTR ERVL 1 554 0 191 266 25 76 chr13 25785264 25785343 -76087826 + MIR SINE MIR 108 182 -80 344 300 130 20 chr13 25785874 25786074 -76087095 - MIR SINE MIR -18 244 23 682 258 51 23 chr13 25786090 25786307 -76086862 + MIR SINE MIR 40 262 0 323 365 60 16 chr13 25786330 25786645 -76086524 + L2 LINE L2 2153 2481 -833 26 30 0 0 chr13 25786760 25786793 -76086376 + AT_rich Low_complexity Low_complexity 1 33 0 668 211 0 12 chr13 25786793 25786954 -76086215 - MER96B DNA MER1_type? -258 159 1 1789 167 48 14 chr13 25787480 25787833 -76085336 + MLT1A1 LTR MaLR 1 365 0 2133 125 0 26 chr13 25788106 25788419 -76084750 + AluSx SINE Alu 1 305 -7 271 315 12 12 chr13 25789339 25789456 -76083713 + MIR SINE MIR 3 120 -88 1649 136 0 12 chr13 25790530 25790780 -76082389 - AluJo SINE Alu -21 291 45 2208 128 126 5 chr13 25791537 25791919 -76081250 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr13 25792012 25792041 -76081128 + AT_rich Low_complexity Low_complexity 1 29 0 180 176 0 0 chr13 25792517 25792551 -76080618 + (CATA)n Simple_repeat Simple_repeat 2 35 0 281 317 113 36 chr13 25792614 25792835 -76080334 + L2 LINE L2 2811 3048 -224 254 71 0 24 chr13 25793078 25793120 -76080049 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 227 196 22 0 chr13 25794248 25794294 -76078875 - MIR SINE MIR -114 148 102 549 224 82 20 chr13 25794495 25794642 -76078527 + MIR SINE MIR 3 158 -104 285 239 228 58 chr13 25795406 25795761 -76077408 - MLT1L LTR MaLR -138 477 1 998 150 0 0 chr13 25795908 25796055 -76077114 + AluSq SINE Alu 151 297 -16 377 336 8 16 chr13 25796105 25796240 -76076929 - MIR3 SINE MIR -31 177 43 1849 113 77 39 chr13 25796314 25796651 -76076518 - THE1B LTR MaLR -12 352 3 11805 92 5 4 chr13 25796653 25798232 -76074937 - THE1B-int LTR MaLR 0 1580 1 2134 118 29 31 chr13 25798232 25798581 -76074588 - THE1B LTR MaLR 0 364 17 426 347 58 11 chr13 25798760 25798950 -76074219 + MIR SINE MIR 57 255 -7 25 51 0 0 chr13 25799678 25799717 -76073452 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr13 25799822 25799850 -76073319 + AT_rich Low_complexity Low_complexity 1 28 0 414 248 169 23 chr13 25800352 25800654 -76072515 + L1MEc LINE L1 797 1142 -5254 723 256 24 71 chr13 25800736 25801486 -76071683 + L1ME LINE L1 710 1462 -4848 897 45 18 0 chr13 25801874 25801985 -76071184 - L1PA10 LINE L1 -4 6164 6052 728 286 67 37 chr13 25802095 25802766 -76070403 - L1M4 LINE L1 -1703 4443 3753 270 0 0 0 chr13 25803002 25803032 -76070137 + (T)n Simple_repeat Simple_repeat 1 30 0 365 276 76 11 chr13 25804636 25804821 -76068348 - L1M3 LINE L1 -718 5450 5254 346 305 41 7 chr13 25805080 25805372 -76067797 + L1ME LINE L1 4291 4592 -1537 229 254 106 7 chr13 25806002 25806144 -76067025 + L1ME LINE L1 5275 5430 -719 1182 90 145 47 chr13 25806435 25806669 -76066500 + MLT1B LTR MaLR 1 257 -133 830 150 90 6 chr13 25806832 25806999 -76066170 + MLT1B LTR MaLR 210 390 0 884 252 32 5 chr13 25807022 25807240 -76065929 - MER58A DNA MER1_type 0 224 1 1872 261 173 28 chr13 25807686 25808729 -76064440 + L2 LINE L2 2115 3313 0 848 285 21 0 chr13 25808813 25809048 -76064121 + MIR SINE MIR 21 260 -2 502 276 83 7 chr13 25809942 25810087 -76063082 - L2 LINE L2 -8 3264 3109 2490 112 22 0 chr13 25810242 25810598 -76062571 + THE1B LTR MaLR 1 364 0 216 196 20 0 chr13 25810720 25810771 -76062398 + L2 LINE L2 3262 3313 0 380 233 58 10 chr13 25812103 25812206 -76060963 - MIR SINE MIR -50 212 105 852 196 63 23 chr13 25812208 25812632 -76060537 + MLT1D LTR MaLR 1 505 0 258 289 21 91 chr13 25812697 25812884 -76060285 - MIR SINE MIR -17 245 72 237 163 0 0 chr13 25814185 25814234 -76058935 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 270 143 0 0 chr13 25814371 25814413 -76058756 + 5S rRNA rRNA 1 42 -79 186 43 0 0 chr13 25814479 25814502 -76058667 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1597 160 21 42 chr13 25814505 25814793 -76058376 - AluJo SINE Alu -30 282 1 2295 106 3 0 chr13 25814952 25815263 -76057906 + AluSx SINE Alu 1 312 0 324 0 0 0 chr13 25815270 25815306 -76057863 + (TA)n Simple_repeat Simple_repeat 2 37 0 1775 149 0 0 chr13 25817838 25818106 -76055063 + AluSx SINE Alu 38 305 -7 282 260 0 27 chr13 25818118 25818191 -76054978 - MER5A DNA MER1_type -24 165 95 782 301 45 4 chr13 25818818 25819064 -76054105 + MIR SINE MIR 7 262 0 387 0 0 0 chr13 25820043 25820086 -76053083 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 405 24 0 chr13 25820194 25820278 -76052891 - L2 LINE L2 -608 2706 2621 1912 160 7 3 chr13 25820558 25820851 -76052318 + AluJb SINE Alu 1 294 -18 330 115 0 0 chr13 25820853 25820905 -76052264 + (TG)n Simple_repeat Simple_repeat 1 52 0 413 291 17 51 chr13 25821881 25822039 -76051130 + MIR SINE MIR 20 172 -61 31 0 0 0 chr13 25822254 25822285 -76050884 + AT_rich Low_complexity Low_complexity 1 31 0 2125 109 10 3 chr13 25822295 25822589 -76050580 + AluSx SINE Alu 1 296 -16 2019 114 3 20 chr13 25822673 25822971 -76050198 + AluSq SINE Alu 1 293 -20 672 287 117 24 chr13 25822978 25823441 -76049728 + L1M4 LINE L1 2318 2823 -3323 258 323 0 8 chr13 25823957 25824084 -76049085 - L1M4 LINE L1 -1480 4666 4541 911 298 111 17 chr13 25824485 25825089 -76048080 - L1M4 LINE L1 -1830 4316 3656 2202 187 44 67 chr13 25825303 25825778 -76047391 + MLT2C2 LTR ERVL 1 464 0 219 238 0 0 chr13 25826430 25826472 -76046697 + (CA)n Simple_repeat Simple_repeat 1 42 0 307 219 41 27 chr13 25826657 25826730 -76046439 + MIR SINE MIR 76 149 -113 2120 183 119 28 chr13 25828695 25829197 -76043972 - Charlie1a DNA MER1_type -907 548 1 1285 230 138 17 chr13 25829424 25829829 -76043340 - MLT1C LTR MaLR 0 467 14 1287 262 58 38 chr13 25830005 25830455 -76042714 - L1ME1 LINE L1 -5 6161 5703 305 343 38 9 chr13 25830600 25830813 -76042356 + L1ME LINE L1 5544 5762 -359 2366 253 35 16 chr13 25831271 25831947 -76041222 + L1ME3A LINE L1 5473 6161 -9 1375 267 34 59 chr13 25832802 25833398 -76039771 + L1MC5 LINE L1 6676 7255 -733 1202 246 62 26 chr13 25833515 25834015 -76039154 + L1MC5 LINE L1 7260 7777 -184 336 296 83 15 chr13 25834765 25834897 -76038272 + MIR SINE MIR 20 160 -102 1705 185 3 7 chr13 25835244 25835541 -76037628 + AluJo SINE Alu 1 296 -16 1449 206 18 83 chr13 25835616 25835783 -76037386 + MLT1A2 LTR MaLR 1 177 -197 16681 28 1 0 chr13 25835783 25838408 -76034761 + L1PA3 LINE L1 3528 6155 0 1449 206 18 83 chr13 25838408 25838637 -76034532 + MLT1A2 LTR MaLR 177 371 -3 186 337 36 24 chr13 25838726 25838809 -76034360 + MIR SINE MIR 64 147 -61 187 320 13 13 chr13 25838861 25838936 -76034233 + MIR SINE MIR 172 246 -16 254 300 108 31 chr13 25838959 25839089 -76034080 + L2 LINE L2 3169 3308 -5 24 0 0 0 chr13 25839396 25839420 -76033749 + AT_rich Low_complexity Low_complexity 1 24 0 205 322 89 0 chr13 25840454 25840544 -76032625 - L2 LINE L2 -528 2786 2689 348 333 68 10 chr13 25840860 25841067 -76032102 + L1MEd LINE L1 264 482 -5637 545 292 55 41 chr13 25841205 25841695 -76031474 + L1MEd LINE L1 654 1150 -4969 2565 52 0 0 chr13 25841737 25842042 -76031127 + AluY SINE Alu 1 305 -6 863 136 0 45 chr13 25842204 25842336 -76030833 + FLAM_C SINE Alu 1 126 -7 22 0 0 0 chr13 25842336 25842358 -76030811 + AT_rich Low_complexity Low_complexity 1 22 0 196 209 0 90 chr13 25842642 25842709 -76030460 - MIR3 SINE MIR -133 75 15 667 240 31 10 chr13 25843517 25843709 -76029460 + LTR16A LTR ERVL 25 220 -230 1938 170 58 33 chr13 25843763 25844304 -76028865 + MLT2A2 LTR ERVL 1 554 0 554 196 45 0 chr13 25844304 25844433 -76028736 + LTR16A LTR ERVL 306 440 -10 1939 159 3 0 chr13 25844466 25844768 -76028401 - AluJo SINE Alu -8 304 2 552 145 0 12 chr13 25844951 25845034 -76028135 + AluJb SINE Alu 172 253 -59 421 238 157 0 chr13 25845069 25845216 -76027953 + LTR16A LTR ERVL 281 450 0 3743 55 0 7 chr13 25845615 25846066 -76027103 - LTR7 LTR ERV1 -2 448 1 2526 81 45 16 chr13 25846066 25846447 -76026722 - HERVH LTR ERV1 0 7713 7322 1364 119 18 44 chr13 25846445 25846671 -76026498 - HERVH LTR ERV1 -1894 5819 5600 * 2458 173 15 0 chr13 25846672 25847076 -76026093 - HERVH LTR ERV1 -2564 5149 4740 1011 143 0 7 chr13 25847075 25847229 -76025940 - HERVH LTR ERV1 -4069 3644 3492 * 871 124 41 0 chr13 25847219 25847364 -76025805 - HERVH LTR ERV1 -4423 3290 3140 * 15769 88 12 16 chr13 25847343 25849610 -76023559 - HERVH LTR ERV1 -4718 2995 739 1141 251 105 33 chr13 25849925 25850476 -76022693 + L1MC4 LINE L1 7442 8032 -10 2432 61 0 22 chr13 25850476 25850788 -76022381 - AluY SINE Alu -2 309 5 236 246 0 14 chr13 25850916 25850985 -76022184 + L1ME3A LINE L1 6100 6167 -3 286 176 0 20 chr13 25851381 25851432 -76021737 - MLT1J LTR MaLR -74 437 388 611 111 10 20 chr13 25851495 25851594 -76021575 + MER4A LTR ERV1 1 98 -566 1799 124 159 90 chr13 25851594 25851920 -76021249 + MER4A LTR ERV1 261 618 -46 2469 60 0 10 chr13 25851920 25852220 -76020949 - AluY SINE Alu -14 297 1 1799 124 159 90 chr13 25852220 25852271 -76020898 + MER4A LTR ERV1 618 664 0 360 342 111 0 chr13 25852280 25852397 -76020772 - MIR SINE MIR -90 172 43 671 280 54 88 chr13 25852437 25852791 -76020378 - MLT1J LTR MaLR -145 366 25 321 254 189 30 chr13 25853014 25853215 -76019954 + L1ME4a LINE L1 5702 5934 -187 307 248 110 35 chr13 25853217 25853362 -76019807 + L1ME4a LINE L1 5962 6117 -4 1466 218 85 19 chr13 25853953 25854329 -76018840 + LTR40c LTR ERVL 65 465 0 412 351 104 13 chr13 25854598 25854752 -76018417 + MER91A DNA MER1_type 1 168 -28 2594 37 0 7 chr13 25855686 25855985 -76017184 - AluY SINE Alu -14 297 1 2345 112 0 3 chr13 25855994 25856306 -76016863 - AluSx SINE Alu -1 311 1 33 25 0 0 chr13 25857471 25857511 -76015658 + AT_rich Low_complexity Low_complexity 1 40 0 721 211 133 0 chr13 25857956 25858122 -76015047 + MER5A DNA MER1_type 2 189 0 356 225 63 36 chr13 25858951 25859062 -76014107 - L2 LINE L2 -5 3267 3154 405 0 0 0 chr13 25861404 25861449 -76011720 + (TG)n Simple_repeat Simple_repeat 2 46 0 6820 53 35 31 chr13 25863068 25864549 -76008620 - SVA Other Other -799 1386 57 938 7 20 61 chr13 25864549 25864697 -76008472 + (GGGAGA)n Simple_repeat Simple_repeat 1 142 0 209 33 33 0 chr13 25866740 25866770 -76006399 + (CA)n Simple_repeat Simple_repeat 2 32 0 253 216 27 27 chr13 25866770 25866844 -76006325 + (CAGAGA)n Simple_repeat Simple_repeat 5 78 0 202 222 22 0 chr13 25867210 25867255 -76005914 + CT-rich Low_complexity Low_complexity 1 46 0 1868 135 13 48 chr13 25867572 25867884 -76005285 - AluJb SINE Alu -11 301 1 673 243 151 0 chr13 25868016 25868168 -76005001 + MER5A DNA MER1_type 12 186 -3 341 321 15 36 chr13 25869030 25869167 -76004002 - MER63 DNA MER1_type -76 760 1 2512 176 32 36 chr13 25869321 25869827 -76003342 + MLT1D LTR MaLR 1 504 -1 498 259 67 0 chr13 25870563 25870698 -76002471 + MIR SINE MIR 105 248 -14 731 215 0 0 chr13 25871693 25871823 -76001346 + FLAM_C SINE Alu 2 131 -2 29 21 0 21 chr13 25871874 25871890 -76001279 + AT_rich Low_complexity Low_complexity 1 16 -30 1792 165 7 0 chr13 25871890 25872181 -76000988 + AluJb SINE Alu 1 293 -19 29 21 0 21 chr13 25872181 25872211 -76000958 + AT_rich Low_complexity Low_complexity 16 46 0 235 368 173 32 chr13 25872298 25872982 -76000187 + L2 LINE L2 2129 2908 -406 248 337 109 0 chr13 25873047 25873139 -76000030 - MER91A DNA MER1_type 0 196 95 403 354 29 23 chr13 25873142 25873317 -75999852 - MER91A DNA MER1_type -20 176 1 351 349 55 0 chr13 25873708 25873817 -75999352 + L2 LINE L2 3136 3250 -22 2323 113 0 0 chr13 25873933 25874243 -75998926 - AluSq SINE Alu -3 310 1 22 0 0 0 chr13 25875369 25875391 -75997778 + AT_rich Low_complexity Low_complexity 1 22 0 210 320 230 11 chr13 25876433 25876611 -75996558 + MIR SINE MIR 34 250 -12 698 148 23 23 chr13 25877350 25877478 -75995691 - LTR12 LTR ERV1 -228 486 359 319 219 0 0 chr13 25877478 25877551 -75995618 - LTR30 LTR ERV1 -98 624 552 1539 86 3 162 chr13 25877551 25877890 -75995279 - LTR12 LTR ERV1 -429 285 1 215 360 88 0 chr13 25877912 25878048 -75995121 + L3b LINE CR1 1319 1466 -117 2147 143 0 0 chr13 25878588 25878888 -75994281 - AluSx SINE Alu -12 300 1 2151 117 3 7 chr13 25880144 25880452 -75992717 - AluSx SINE Alu -3 309 3 1922 151 99 14 chr13 25880461 25880893 -75992276 - MER4D LTR ERV1 -434 469 1 276 79 16 32 chr13 25881134 25881197 -75991972 + (CAAAAA)n Simple_repeat Simple_repeat 2 63 0 5336 206 65 32 chr13 25881210 25882615 -75990554 - MER109 Unknown Unknown -2 2430 980 1508 131 8 17 chr13 25882615 25882852 -75990317 - MER1B DNA MER1_type 0 339 105 2300 167 29 18 chr13 25884120 25884190 -75988979 - MER90 LTR ERV1 -87 527 459 2549 106 0 11 chr13 25884190 25884557 -75988612 + THE1B LTR MaLR 1 363 -1 2300 167 29 18 chr13 25884557 25884934 -75988235 - MER90 LTR ERV1 -155 459 75 7076 57 20 0 chr13 25884939 25885886 -75987283 - L1PA7 LINE L1 -1 6153 5203 360 324 122 38 chr13 25886027 25886240 -75986929 + MIR SINE MIR 21 251 -11 2918 16 0 0 chr13 25886632 25886950 -75986219 + AluYb8 SINE Alu 1 318 0 356 317 129 54 chr13 25887318 25887946 -75985223 + L1MC4a LINE L1 2148 2822 -3324 902 207 29 0 chr13 25887979 25888153 -75985016 - AluJb SINE Alu -5 307 129 314 319 122 16 chr13 25888495 25888749 -75984420 + L1MC4a LINE L1 5089 5369 -777 963 119 7 20 chr13 25888884 25889035 -75984134 + FRAM SINE Alu 3 151 -25 520 337 96 44 chr13 25889063 25889728 -75983441 - L2 LINE L2 -25 3288 2552 12624 116 32 92 chr13 25889729 25890687 -75982482 + Tigger1 DNA MER2_type 1 1015 -1403 2333 93 0 3 chr13 25890687 25890988 -75982181 - AluSx SINE Alu -12 300 1 12624 116 32 92 chr13 25890988 25892602 -75980567 + Tigger1 DNA MER2_type 1015 2417 -1 2194 311 116 48 chr13 25892607 25893727 -75979442 - L2 LINE L2 -777 2537 1257 2251 120 3 3 chr13 25893727 25894036 -75979133 + AluSq SINE Alu 1 309 -4 2194 311 116 48 chr13 25894036 25894644 -75978525 - L2 LINE L2 -2057 1257 692 593 340 57 20 chr13 25895839 25896136 -75977033 - L2 LINE L2 -2671 643 336 180 0 0 0 chr13 25896143 25896163 -75977006 + (T)n Simple_repeat Simple_repeat 1 20 0 2639 210 42 25 chr13 25896165 25896880 -75976289 - L1MC4a LINE L1 0 7808 7082 1532 170 115 0 chr13 25897243 25897513 -75975656 + AluJo SINE Alu 1 301 -11 314 266 90 11 chr13 25897622 25897799 -75975370 + L1MC4a LINE L1 5727 5917 -1891 529 250 64 70 chr13 25897849 25897971 -75975198 - MLT1J2 LTR MaLR -35 411 290 2819 6 3 3 chr13 25897971 25898284 -75974885 + AluYb8 SINE Alu 1 313 -5 529 250 64 70 chr13 25898284 25898568 -75974601 - MLT1J2 LTR MaLR -156 290 4 230 278 0 0 chr13 25899112 25899166 -75974003 + L2 LINE L2 3219 3272 0 415 290 57 8 chr13 25899411 25899535 -75973634 + MER5A DNA MER1_type 38 167 -22 214 263 128 38 chr13 25899416 25899549 -75973620 - MER5A DNA MER1_type -31 158 14 * 1608 233 32 15 chr13 25899852 25900373 -75972796 - MER90 LTR ERV1 0 614 8 841 269 59 20 chr13 25900471 25900776 -75972393 - MLT1J1 LTR MaLR -129 317 1 354 23 0 0 chr13 25902446 25902489 -75970680 + (TG)n Simple_repeat Simple_repeat 2 44 0 426 183 0 0 chr13 25903715 25903830 -75969339 + (TCCA)n Simple_repeat Simple_repeat 4 118 0 389 264 50 0 chr13 25904262 25904383 -75968786 - MER20B DNA MER1_type -604 179 53 316 389 42 27 chr13 25904509 25904841 -75968328 - L2 LINE L2 -560 2754 2418 518 374 74 12 chr13 25905369 25905706 -75967463 - L3 LINE CR1 -782 795 438 26 30 0 0 chr13 25905868 25905901 -75967268 + AT_rich Low_complexity Low_complexity 1 33 0 1986 154 0 0 chr13 25906243 25906548 -75966621 - AluJb SINE Alu -7 305 1 254 83 42 62 chr13 25906871 25906919 -75966250 + MER5A DNA MER1_type 59 105 -84 1401 196 161 7 chr13 25907160 25907589 -75965580 - MLT1D LTR MaLR -9 496 2 1663 270 91 26 chr13 25907951 25908044 -75965125 - HAL1 LINE L1 -604 1903 1818 830 192 66 0 chr13 25908044 25908211 -75964958 - MER5B DNA MER1_type 0 178 1 1663 270 91 26 chr13 25908211 25908883 -75964286 - HAL1 LINE L1 -689 1818 1088 376 343 83 44 chr13 25909015 25909426 -75963743 - HAL1 LINE L1 -1917 590 164 1571 178 146 26 chr13 25909580 25909997 -75963172 + MLT1C LTR MaLR 1 467 0 235 426 59 34 chr13 25909998 25910235 -75962934 + L2 LINE L2 2943 3185 -87 289 202 0 24 chr13 25910803 25910887 -75962282 + CT-rich Low_complexity Low_complexity 4 85 0 183 233 0 23 chr13 25912036 25912079 -75961090 - MIR SINE MIR -2 260 219 286 304 43 14 chr13 25912766 25912904 -75960265 + MARNA DNA Mariner 431 572 -14 24 0 0 0 chr13 25913528 25913552 -75959617 + AT_rich Low_complexity Low_complexity 1 24 0 2237 108 3 3 chr13 25914270 25914565 -75958604 - AluSx SINE Alu -17 295 1 225 179 0 0 chr13 25914709 25914748 -75958421 - L2 LINE L2 -1 3312 3274 474 299 27 27 chr13 25915437 25915584 -75957585 - L2 LINE L2 0 3313 3167 1983 144 144 8 chr13 25915662 25916036 -75957133 - MSTA LTR MaLR 0 428 4 451 281 26 7 chr13 25916164 25916317 -75956852 + MLT1L LTR MaLR 93 248 -367 467 294 86 47 chr13 25916330 25916664 -75956505 - L1MEc LINE L1 -3734 2508 2182 763 268 105 88 chr13 25916707 25917290 -75955879 - HAL1 LINE L1 -1071 1436 844 273 294 99 17 chr13 25917983 25918276 -75954893 + L1ME4a LINE L1 3121 3437 -2709 189 0 0 0 chr13 25918549 25918570 -75954599 + (CA)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr13 25918949 25918970 -75954199 + (CA)n Simple_repeat Simple_repeat 1 21 0 210 71 0 0 chr13 25918970 25918998 -75954171 + (TC)n Simple_repeat Simple_repeat 1 28 0 451 316 108 53 chr13 25919003 25919418 -75953751 + L1ME4a LINE L1 3700 4137 -2009 2155 115 27 0 chr13 25919660 25919956 -75953213 + AluSq SINE Alu 1 304 -9 5234 132 25 63 chr13 25920125 25921097 -75952072 - L1MA8 LINE L1 -6 6285 5277 2069 111 3 41 chr13 25921097 25921412 -75951757 - AluSq SINE Alu -10 303 1 5234 132 25 63 chr13 25921412 25921698 -75951471 - L1MA8 LINE L1 -1014 5277 5097 1950 161 6 3 chr13 25921698 25922009 -75951160 - AluSx SINE Alu 0 312 1 5234 132 25 63 chr13 25922009 25922343 -75950826 - L1MA8 LINE L1 -1194 5097 4752 303 301 193 39 chr13 25922617 25922949 -75950220 + L1ME4a LINE L1 5515 5897 -224 1208 177 23 19 chr13 25923101 25923367 -75949802 + L1MA6 LINE L1 6034 6300 0 355 270 221 33 chr13 25925382 25925953 -75947216 - L1MC4a LINE L1 -1839 5969 5292 471 276 33 26 chr13 25926078 25926230 -75946939 + L2 LINE L2 3161 3313 0 1372 82 146 10 chr13 25926638 25926844 -75946325 - L1PA11 LINE L1 0 6174 5941 283 278 22 44 chr13 25927364 25927477 -75945692 + MIR SINE MIR 42 151 -62 573 262 142 71 chr13 25927588 25927955 -75945214 + HAL1 LINE L1 4 396 -2111 3162 3 0 3 chr13 25928112 25928446 -75944723 + L1PA3 LINE L1 5822 6154 -1 2322 113 0 0 chr13 25930986 25931297 -75941872 - AluSx SINE Alu -1 311 1 582 328 93 48 chr13 25932698 25933095 -75940074 - L2 LINE L2 -5 3308 2852 2027 132 21 0 chr13 25933095 25933384 -75939785 - AluSx SINE Alu -12 300 6 582 328 93 48 chr13 25933384 25933672 -75939497 - L2 LINE L2 -461 2852 2579 774 214 109 50 chr13 25934062 25934300 -75938869 - MER112 DNA MER1_type -1 259 8 4213 98 7 0 chr13 25934364 25934914 -75938255 + MER41A LTR ERV1 1 554 0 1830 217 50 37 chr13 25935030 25935543 -75937626 + MER39 LTR ERV1 1 700 -7 2466 90 0 0 chr13 25935635 25935945 -75937224 + AluSg SINE Alu 1 310 0 341 318 47 8 chr13 25936007 25936136 -75937033 + MIR SINE MIR 10 143 -119 842 270 35 45 chr13 25937486 25937639 -75935530 - LTR16B LTR ERVL 0 464 311 2228 140 89 29 chr13 25937639 25938053 -75935116 - MER65A LTR ERV1 -4 441 3 842 270 35 45 chr13 25938053 25938203 -75934966 - LTR16B LTR ERVL -153 311 164 385 294 98 7 chr13 25938203 25938346 -75934823 + LTR26 LTR ERV1 1 156 -447 951 196 22 45 chr13 25938357 25938581 -75934588 + LTR26 LTR ERV1 385 603 0 318 255 41 69 chr13 25938581 25938713 -75934456 - LTR16B LTR ERVL -303 161 34 2034 224 82 84 chr13 25938774 25938973 -75934196 + MER21B LTR ERV1 1 199 -664 2439 94 0 7 chr13 25938973 25939282 -75933887 + AluSg SINE Alu 1 307 -3 2034 224 82 84 chr13 25939282 25939822 -75933347 + MER21B LTR ERV1 199 739 -124 244 316 129 58 chr13 25939876 25939971 -75933198 + L2 LINE L2 2991 3078 -194 1448 110 48 40 chr13 25939971 25940199 -75932970 - MER30 DNA MER1_type 0 230 1 244 316 129 58 chr13 25940199 25940274 -75932895 + L2 LINE L2 3078 3173 -99 2216 117 0 0 chr13 25940961 25941259 -75931910 + AluSg SINE Alu 1 298 -12 1203 201 39 42 chr13 25941361 25941671 -75931498 - AluJo SINE Alu 0 309 1 474 286 97 19 chr13 25941796 25941950 -75931219 - MIR SINE MIR -89 173 8 186 43 0 0 chr13 25942071 25942094 -75931075 + (T)n Simple_repeat Simple_repeat 1 23 0 2573 59 0 0 chr13 25942096 25942403 -75930766 - AluY SINE Alu -4 307 1 185 35 69 0 chr13 25943788 25943817 -75929352 + T-rich Low_complexity Low_complexity 1 31 0 2128 91 4 0 chr13 25943821 25944095 -75929074 - AluSx SINE Alu -37 275 1 301 242 80 37 chr13 25945376 25945523 -75927646 - MER5B DNA MER1_type -18 171 4 189 307 70 53 chr13 25945523 25945607 -75927562 - L2 LINE L2 -66 3247 3162 247 206 32 48 chr13 25946052 25946115 -75927054 - MER5A DNA MER1_type 0 189 128 789 151 0 8 chr13 25946119 25946238 -75926931 + AluSq/x SINE Alu 2 119 -194 259 59 0 0 chr13 25946238 25946272 -75926897 + Alu SINE Alu 254 287 -13 662 170 28 0 chr13 25946281 25946387 -75926782 - MER5A DNA MER1_type -80 109 1 202 335 86 46 chr13 25946400 25946552 -75926617 - L2 LINE L2 -559 2755 2598 843 146 0 0 chr13 25946610 25946733 -75926436 + AluJb SINE Alu 1 123 -189 245 311 9 38 chr13 25946860 25946966 -75926203 + MIR3 SINE MIR 62 164 -44 1145 228 5 5 chr13 25946974 25947193 -75925976 + MER20 DNA MER1_type 1 219 0 2498 70 0 0 chr13 25947765 25948066 -75925103 + AluY SINE Alu 1 301 -10 935 241 61 67 chr13 25949089 25949417 -75923752 + MSTD LTR MaLR 40 396 0 2175 132 0 0 chr13 25949634 25949937 -75923232 + AluSg SINE Alu 1 303 -7 1507 168 58 24 chr13 25949949 25950241 -75922928 + AluJo SINE Alu 3 304 -8 2140 97 3 10 chr13 25950313 25950611 -75922558 - AluSx SINE Alu -16 296 1 469 221 89 0 chr13 25950957 25951105 -75922064 + L1MC4 LINE L1 6443 6610 -1198 2003 215 113 21 chr13 25951106 25951691 -75921478 - MLT1E2 LTR MaLR 0 626 1 4872 189 73 68 chr13 25951713 25952023 -75921146 + L1MC4 LINE L1 6611 6918 -1124 884 114 7 57 chr13 25952023 25952163 -75921006 + FLAM_C SINE Alu 1 133 0 4872 189 73 68 chr13 25952163 25953064 -75920105 + L1MC4 LINE L1 6918 7831 -211 1494 156 114 35 chr13 25953064 25953353 -75919816 + AluSx SINE Alu 1 312 0 4872 189 73 68 chr13 25953353 25953426 -75919743 + L1MC4 LINE L1 7831 7902 -140 2079 191 43 41 chr13 25953442 25953904 -75919265 + MLT1C LTR MaLR 4 466 -1 652 256 134 59 chr13 25953931 25954065 -75919104 + LTR38B LTR ERV1 61 184 -427 2256 108 0 19 chr13 25954065 25954379 -75918790 + AluSx SINE Alu 1 308 -4 652 256 134 59 chr13 25954379 25954744 -75918425 + LTR38B LTR ERV1 184 611 0 755 189 37 18 chr13 25954860 25955024 -75918145 - LTR49 LTR ERV1 -13 582 416 * 1549 138 270 9 chr13 25955022 25955355 -75917814 - LTR29 LTR ERV1 -202 420 1 2364 88 0 0 chr13 25955379 25955673 -75917496 + AluSg SINE Alu 1 294 -16 237 318 218 0 chr13 25956186 25956356 -75916813 - L2 LINE L2 -627 2687 2481 23 0 0 0 chr13 25957107 25957130 -75916039 + AT_rich Low_complexity Low_complexity 1 23 0 3328 267 113 46 chr13 25959377 25961107 -75912062 + L2 LINE L2 1388 3289 -24 602 214 14 50 chr13 25961300 25961440 -75911729 + L1MC/D LINE L1 5425 5559 -2249 308 275 131 31 chr13 25961467 25962242 -75910927 + L1 LINE L1 3502 4470 -1676 2408 77 0 3 chr13 25962242 25962554 -75910615 + AluY SINE Alu 1 311 0 308 275 131 31 chr13 25962554 25962627 -75910542 + L1 LINE L1 4470 4534 -1612 268 300 130 10 chr13 25962814 25963107 -75910062 + L1 LINE L1 4874 5201 -945 26 30 0 0 chr13 25963560 25963593 -75909576 + AT_rich Low_complexity Low_complexity 1 33 0 3877 135 56 32 chr13 25966580 25966676 -75906493 + MER50 LTR ERV1 1 93 -641 2274 107 0 13 chr13 25966676 25966986 -75906183 - AluSx SINE Alu -6 306 1 3877 135 56 32 chr13 25966986 25967444 -75905725 + MER50 LTR ERV1 93 578 -156 2314 91 7 0 chr13 25967444 25967741 -75905428 - AluSp SINE Alu -14 299 1 3877 135 56 32 chr13 25967741 25967879 -75905290 + MER50 LTR ERV1 578 711 -23 496 271 18 60 chr13 25969495 25969661 -75903508 - MLT1I LTR MaLR -240 169 11 266 238 24 36 chr13 25969762 25969846 -75903323 - L2 LINE L2 -9 3263 3181 261 0 0 0 chr13 25969869 25969898 -75903271 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chr13 25969897 25969927 -75903242 + (GA)n Simple_repeat Simple_repeat 2 31 0 238 319 34 88 chr13 25970018 25970222 -75902947 - L2 LINE L2 -568 2746 2554 583 197 43 0 chr13 25970535 25970652 -75902517 + L2 LINE L2 3192 3313 0 1884 161 154 15 chr13 25970803 25971193 -75901976 + LTR47A LTR ERVL 6 449 -3 333 0 0 0 chr13 25971193 25971230 -75901939 + (CA)n Simple_repeat Simple_repeat 2 38 0 282 56 0 0 chr13 25971230 25971266 -75901903 + (GA)n Simple_repeat Simple_repeat 1 36 0 191 322 0 0 chr13 25971618 25971677 -75901492 + MIR SINE MIR 64 122 -140 4295 142 31 46 chr13 25972879 25973042 -75900127 + LTR8A LTR ERV1 1 165 -562 2305 84 7 0 chr13 25973042 25973350 -75899819 + AluY SINE Alu 2 311 0 4295 142 31 46 chr13 25973350 25973924 -75899245 + LTR8A LTR ERV1 165 727 0 280 192 39 0 chr13 25974177 25974255 -75898914 + CT-rich Low_complexity Low_complexity 4 84 0 2391 53 7 10 chr13 25974504 25974805 -75898364 + AluY SINE Alu 1 300 -11 734 249 34 15 chr13 25974807 25975012 -75898157 + MER67C LTR ERV1 123 331 -379 1161 123 41 10 chr13 25975022 25975217 -75897952 + MER67C LTR ERV1 507 707 -3 487 211 64 9 chr13 25975218 25975327 -75897842 - L2 LINE L2 -26 3287 3173 347 265 37 52 chr13 25975754 25975890 -75897279 - L3 LINE CR1 -622 955 822 333 303 92 41 chr13 25975911 25976106 -75897063 + L3 LINE CR1 1178 1382 -195 181 235 101 128 chr13 25976145 25976294 -75896875 - MER5B DNA MER1_type -28 150 6 5036 156 34 37 chr13 25976444 25977366 -75895803 + MER49 LTR ERV1 5 923 0 315 204 0 0 chr13 25977366 25977420 -75895749 + MER94 DNA DNA 9 62 -72 528 279 13 6 chr13 25977852 25978010 -75895159 + MER114 LTR ERV 490 648 0 1102 215 42 105 chr13 25978714 25979301 -75893868 - MER39 LTR ERV1 0 684 1 3701 53 0 11 chr13 25979671 25980124 -75893045 + LTR7 LTR ERV1 1 448 -2 19073 90 26 15 chr13 25980126 25982909 -75890260 + HERVH LTR ERV1 1 2815 -4898 181 385 12 0 chr13 25983114 25983197 -75889972 - L2 LINE L2 -5 3267 3184 313 325 51 17 chr13 25983229 25983346 -75889823 - MIR3 SINE MIR -54 154 34 2107 133 0 13 chr13 25984068 25984370 -75888799 - AluSx SINE Alu -14 298 1 387 322 7 34 chr13 25984536 25984685 -75888484 + MIR SINE MIR 20 164 -98 2330 100 3 0 chr13 25984897 25985207 -75887962 - AluSx SINE Alu 0 312 2 596 100 0 0 chr13 25985596 25985676 -75887493 - MADE1 DNA Mariner 0 80 1 2455 158 28 125 chr13 25985804 25986444 -75886725 + MER70B LTR ERVL 1 578 0 696 238 62 33 chr13 25986488 25986698 -75886471 + MIR SINE MIR 47 262 0 1524 244 74 17 chr13 25986727 25987186 -75885983 + L1ME LINE L1 5324 5808 -362 890 316 104 13 chr13 25987303 25987677 -75885492 - MLT1J LTR MaLR -3 508 101 468 259 0 37 chr13 25987695 25987803 -75885366 + MLT1F LTR MaLR 1 104 -438 * 813 206 111 26 chr13 25987801 25987990 -75885179 + MLT1F1 LTR MaLR 363 567 0 1717 181 0 13 chr13 25988032 25988331 -75884838 + AluJb SINE Alu 5 299 -13 2501 244 48 57 chr13 25988586 25988881 -75884288 - L2 LINE L2 -355 2959 2663 1658 185 31 69 chr13 25988881 25989270 -75883899 + MLT1A2 LTR MaLR 1 374 0 2501 244 48 57 chr13 25989270 25989787 -75883382 - L2 LINE L2 -651 2663 2154 928 196 17 0 chr13 25990084 25990257 -75882912 - MER5B DNA MER1_type 0 178 3 2351 85 0 0 chr13 25990407 25990701 -75882468 + AluSq SINE Alu 3 296 -17 2239 128 0 0 chr13 25990983 25991296 -75881873 - AluSq SINE Alu 0 313 1 234 307 0 0 chr13 25992092 25992167 -75881002 + MIR SINE MIR 65 139 -123 2478 223 45 75 chr13 25992708 25993418 -75879751 + MER21B LTR ERV1 123 811 -52 22 0 0 0 chr13 25993544 25993566 -75879603 + AT_rich Low_complexity Low_complexity 1 22 0 1990 122 0 67 chr13 25994198 25994525 -75878644 + AluSx SINE Alu 1 305 -7 228 231 103 13 chr13 25994918 25994996 -75878173 + L2 LINE L2 1876 1960 -1354 484 51 0 0 chr13 25995021 25995080 -75878089 - Alu SINE Alu -10 300 242 1094 101 0 0 chr13 25995080 25995218 -75877951 - AluSg SINE Alu -172 138 1 335 122 110 12 chr13 25995532 25995614 -75877555 - MLT1L LTR MaLR -4 611 522 322 256 86 52 chr13 25995625 25995682 -75877487 + L1MC5 LINE L1 7479 7533 -428 1914 212 20 20 chr13 25995682 25996078 -75877091 - MSTD LTR MaLR 0 396 1 322 256 86 52 chr13 25996078 25996289 -75876880 + L1MC5 LINE L1 7533 7756 -205 305 232 0 12 chr13 25996478 25996580 -75876589 + L1MC5 LINE L1 7832 8011 -31 323 251 78 42 chr13 25996601 25996768 -75876401 - MLT1L LTR MaLR -60 555 383 560 195 55 8 chr13 25996769 25996897 -75876272 - MER94 DNA DNA 0 134 1 407 369 68 28 chr13 25997203 25997528 -75875641 + L2 LINE L2 2549 2886 -428 2022 123 0 36 chr13 25997812 25997977 -75875192 - AluSq SINE Alu -20 293 142 2491 77 0 3 chr13 25997977 25998287 -75874882 - AluSg1 SINE Alu 0 309 1 2022 123 0 36 chr13 25998287 25998423 -75874746 - AluSq SINE Alu -171 142 3 394 173 15 90 chr13 25998464 25998597 -75874572 - MER106B DNA MER1_type -3 1056 934 659 174 60 9 chr13 25999047 25999203 -75873966 - MIR SINE MIR 0 262 98 412 323 8 23 chr13 25999901 26000034 -75873135 + L2 LINE L2 3183 3313 0 606 180 18 9 chr13 26000437 26000548 -75872621 - MER101 LTR ERV1 0 474 363 553 128 12 0 chr13 26000537 26000623 -75872546 - MER101 LTR ERV1 -387 87 1 * 183 248 108 101 chr13 26000660 26000761 -75872408 - MIR SINE MIR -63 145 41 4680 97 16 75 chr13 26000761 26000935 -75872234 - LTR8 LTR ERV1 0 691 508 2356 79 10 3 chr13 26000935 26001240 -75871929 - AluSc SINE Alu -2 307 1 4680 97 16 75 chr13 26001240 26001797 -75871372 - LTR8 LTR ERV1 -183 508 3 183 248 108 101 chr13 26001797 26001824 -75871345 - MIR SINE MIR -167 41 16 1886 72 124 11 chr13 26002131 26002396 -75870773 + AluSg SINE Alu 1 295 -15 1214 97 103 0 chr13 26002570 26002745 -75870424 - AluSg SINE Alu -117 193 1 232 362 43 83 chr13 26003578 26003929 -75869240 - L2 LINE L2 -26 3246 2910 586 174 39 84 chr13 26003997 26004041 -75869128 - Charlie5 DNA MER1_type -5 2580 2536 2652 23 0 3 chr13 26004041 26004341 -75868828 - AluY SINE Alu -11 300 2 586 174 39 84 chr13 26004341 26004474 -75868695 - Charlie5 DNA MER1_type -49 2536 2411 1699 146 7 43 chr13 26004480 26004782 -75868387 + AluJo SINE Alu 9 299 -13 265 282 26 13 chr13 26004782 26004860 -75868309 - MIR SINE MIR -131 131 53 1919 252 54 44 chr13 26005209 26005330 -75867839 - MER20B DNA MER1_type -70 713 595 2054 129 3 0 chr13 26005330 26005624 -75867545 + AluSx SINE Alu 1 295 -17 1919 252 54 44 chr13 26005624 26006201 -75866968 - MER20B DNA MER1_type -188 595 8 243 131 16 66 chr13 26006422 26006483 -75866686 + FAM SINE Alu 121 178 -1 22 0 0 0 chr13 26006576 26006598 -75866571 + AT_rich Low_complexity Low_complexity 1 22 0 1415 80 0 0 chr13 26006822 26006998 -75866171 - L1PA11 LINE L1 0 6174 5999 2062 129 0 0 chr13 26007252 26007547 -75865622 - AluSx SINE Alu -17 295 1 394 250 58 33 chr13 26007589 26007709 -75865460 + L2 LINE L2 3191 3313 0 187 260 164 0 chr13 26008333 26008406 -75864763 + L2 LINE L2 2977 3061 -211 371 228 69 40 chr13 26008725 26008826 -75864343 + L2 LINE L2 3156 3259 -13 221 221 29 59 chr13 26009430 26009498 -75863671 + L2 LINE L2 3207 3272 0 372 266 0 0 chr13 26009910 26009989 -75863180 - MER58 DNA MER1_type 0 2420 2342 234 54 0 81 chr13 26009989 26010026 -75863143 + L1PA10 LINE L1 6098 6131 -37 186 316 34 60 chr13 26010175 26010292 -75862877 - L2 LINE L2 0 3313 3200 230 348 36 45 chr13 26010318 26010430 -75862739 + L2 LINE L2 3153 3263 -9 395 187 167 136 chr13 26010620 26010818 -75862351 - MER102b DNA MER1_type 0 341 138 513 274 65 60 chr13 26011181 26011396 -75861773 - MIR SINE MIR -32 230 15 1072 287 130 11 chr13 26011441 26011901 -75861268 - LTR33A LTR ERVL -7 516 2 23 0 0 0 chr13 26063498 26063521 -75809648 + AT_rich Low_complexity Low_complexity 1 23 0 1269 169 24 109 chr13 26064211 26064462 -75808707 + MLT1D LTR MaLR 1 219 -286 198 0 0 0 chr13 26064462 26064484 -75808685 + (GA)n Simple_repeat Simple_repeat 1 22 0 1269 169 24 109 chr13 26064484 26064563 -75808606 + MLT1D LTR MaLR 219 303 -202 368 311 37 62 chr13 26065431 26065592 -75807577 + MIR3 SINE MIR 31 187 -21 211 275 62 88 chr13 26065724 26065746 -75807423 + L2 LINE L2 3157 3178 -94 3218 175 60 15 chr13 26065746 26066341 -75806828 - LTR26E LTR ERV1 0 622 1 211 275 62 88 chr13 26066341 26066398 -75806771 + L2 LINE L2 3178 3234 -38 1713 128 13 58 chr13 26066534 26066847 -75806322 + MER4D LTR ERV1 1 299 -573 3178 163 125 29 chr13 26067042 26067705 -75805464 - LTR8A LTR ERV1 0 727 1 232 342 105 13 chr13 26067712 26067788 -75805381 - MIR SINE MIR -156 106 24 542 287 130 14 chr13 26067862 26068085 -75805084 - MIR SINE MIR -12 250 2 2131 112 84 35 chr13 26068408 26068755 -75804414 + THE1B LTR MaLR 1 364 0 180 321 107 0 chr13 26069500 26069584 -75803585 + L2 LINE L2 3201 3293 -20 252 231 167 0 chr13 26070218 26070296 -75802873 + L2 LINE L2 2640 2730 -584 861 301 36 42 chr13 26070434 26070820 -75802349 - HAL1 LINE L1 -1594 913 530 670 257 25 40 chr13 26070834 26071036 -75802133 - MER63A DNA MER1_type -11 199 1 1269 261 80 23 chr13 26071051 26071487 -75801682 - HAL1 LINE L1 -2001 506 46 663 188 0 55 chr13 26071680 26071808 -75801361 + FLAM_A SINE Alu 1 121 -12 336 260 68 62 chr13 26072754 26072900 -75800269 + MIR SINE MIR 34 180 -82 26 50 0 0 chr13 26073045 26073085 -75800084 + AT_rich Low_complexity Low_complexity 1 40 0 190 235 26 130 chr13 26073522 26073637 -75799532 + L2 LINE L2 2954 3056 -257 525 280 53 0 chr13 26073810 26073960 -75799209 + MIR SINE MIR 2 159 -103 387 250 29 10 chr13 26074717 26074821 -75798348 - MER103 DNA DNA -45 121 16 364 321 144 52 chr13 26075457 26076059 -75797110 + L2 LINE L2 2212 2869 -445 358 369 27 34 chr13 26076423 26076572 -75796597 + L2 LINE L2 3125 3272 0 2162 124 41 86 chr13 26077745 26078164 -75795005 + LTR19C LTR ERV1 380 779 0 3894 206 34 20 chr13 26078165 26078736 -75794433 - L1 LINE L1 -2839 3307 2714 1983 120 52 7 chr13 26078736 26079027 -75794142 - AluSq SINE Alu -9 304 1 3894 206 34 20 chr13 26079027 26079477 -75793692 - L1 LINE L1 -3432 2714 2272 12924 103 137 23 chr13 26079489 26081743 -75791426 - L1PBa LINE L1 -4349 2514 3 21 0 0 0 chr13 26081816 26081837 -75791332 + AT_rich Low_complexity Low_complexity 1 21 0 1299 92 54 0 chr13 26081957 26082141 -75791028 - AluSp SINE Alu -6 307 114 1272 205 86 37 chr13 26082262 26082691 -75790478 - LTR7 LTR ERV1 0 450 1 3323 132 24 4 chr13 26082691 26083237 -75789932 - HERVH LTR ERV1 0 7713 7157 309 200 0 0 chr13 26083230 26083285 -75789884 - HERVH LTR ERV1 -1697 6016 5962 * 4652 102 27 3 chr13 26083305 26083979 -75789190 - HERVH LTR ERV1 -2803 4910 4221 1422 134 0 5 chr13 26083977 26084193 -75788976 - HERVH LTR ERV1 -3423 4290 4076 * 1162 181 60 32 chr13 26084193 26084441 -75788728 - MSTB LTR MaLR -168 258 4 1099 283 114 23 chr13 26084662 26085090 -75788079 - LTR33 LTR ERVL -52 469 3 2360 107 0 0 chr13 26085300 26085609 -75787560 - AluSq SINE Alu -4 309 1 2183 103 7 3 chr13 26085609 26085900 -75787269 - AluSx SINE Alu -20 292 1 331 278 9 28 chr13 26085926 26086034 -75787135 - MIR SINE MIR -11 251 146 356 246 82 33 chr13 26086118 26086335 -75786834 - L1M3 LINE L1 -734 5437 5210 1185 247 147 28 chr13 26087158 26087615 -75785554 - MLT1J LTR MaLR 0 511 1 1702 184 78 9 chr13 26088865 26089213 -75783956 - MLT1D LTR MaLR -133 372 1 2081 83 28 7 chr13 26089220 26089509 -75783660 - AluY SINE Alu -16 295 1 395 252 107 0 chr13 26091882 26091985 -75781184 - L2 LINE L2 -1 3271 3158 236 216 0 20 chr13 26092365 26092416 -75780753 + L2 LINE L2 3222 3271 -1 763 306 192 21 chr13 26092925 26093569 -75779600 - L2 LINE L2 -8 3305 2557 461 232 134 75 chr13 26094772 26095162 -75778007 - L1MEd LINE L1 -1037 1453 947 1675 156 4 4 chr13 26095204 26095454 -75777715 - AluSq SINE Alu -63 250 1 249 305 76 44 chr13 26095466 26095715 -75777454 - HAL1 LINE L1 -1429 1078 822 23 68 0 0 chr13 26096446 26096490 -75776679 + AT_rich Low_complexity Low_complexity 1 44 0 902 216 31 108 chr13 26097394 26097653 -75775516 - MER8 DNA MER2_type 0 239 1 1897 123 18 3 chr13 26098267 26098551 -75774618 - AluSx SINE Alu -24 288 1 241 188 62 0 chr13 26098855 26098903 -75774266 + L2 LINE L2 3222 3272 0 1116 251 244 17 chr13 26099280 26099866 -75773303 + L2 LINE L2 1743 2461 -853 723 268 117 0 chr13 26099871 26100076 -75773093 - LTR16A LTR ERVL -5 445 217 308 266 89 0 chr13 26100077 26100156 -75773013 - L2 LINE L2 -1112 2202 2117 455 309 73 0 chr13 26100156 26100334 -75772835 - LTR16A LTR ERVL -242 208 18 1168 267 135 3 chr13 26100343 26100729 -75772440 + L2 LINE L2 2450 2886 -428 188 326 10 82 chr13 26100865 26100963 -75772206 - MIR SINE MIR -102 106 16 216 0 0 0 chr13 26101454 26101478 -75771691 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr13 26101975 26102008 -75771161 + AT_rich Low_complexity Low_complexity 1 33 0 475 265 146 64 chr13 26102477 26102664 -75770505 + MIR SINE MIR 13 222 -40 2677 141 53 0 chr13 26102664 26103118 -75770051 - L1PA13 LINE L1 0 6163 5686 475 265 146 64 chr13 26103118 26103149 -75770020 + MIR SINE MIR 222 249 -13 258 369 85 0 chr13 26103241 26103382 -75769787 + MIR SINE MIR 104 256 -6 970 171 62 0 chr13 26103822 26103998 -75769171 - MER6B DNA MER2_type -1 209 23 2165 80 14 3 chr13 26104035 26104322 -75768847 - AluY SINE Alu -20 291 2 2508 96 11 14 chr13 26104376 26104741 -75768428 - THE1B LTR MaLR 0 364 1 312 241 0 0 chr13 26105431 26105510 -75767659 + (TA)n Simple_repeat Simple_repeat 1 79 0 2495 66 0 0 chr13 26105750 26106053 -75767116 - AluY SINE Alu -8 303 1 372 330 79 23 chr13 26106883 26107098 -75766071 - MIR SINE MIR -30 232 6 356 252 122 46 chr13 26107113 26107244 -75765925 - MIR SINE MIR -65 197 57 637 236 146 6 chr13 26107489 26107667 -75765502 - MIR SINE MIR -17 245 43 2168 95 4 0 chr13 26107669 26107942 -75765227 + AluSg SINE Alu 2 275 -35 231 245 0 0 chr13 26109870 26109923 -75763246 - Charlie4 DNA MER1_type -1908 53 1 233 242 66 55 chr13 26110697 26110788 -75762381 + MER5C DNA MER1_type 14 105 -219 236 278 44 22 chr13 26110827 26110917 -75762252 + MER5C DNA MER1_type 233 324 0 * 527 305 30 30 chr13 26110917 26111106 -75762063 - L3 LINE CR1 -47 1530 1342 308 294 76 34 chr13 26111334 26111453 -75761716 + L3 LINE CR1 269 392 -1185 852 319 146 22 chr13 26111809 26112375 -75760794 - L2 LINE L2 -1 3312 2688 564 200 0 0 chr13 26112462 26112562 -75760607 + Charlie1a DNA MER1_type 102 201 -1254 245 169 220 68 chr13 26112606 26112641 -75760528 + L1M4 LINE L1 4972 5000 -1146 782 264 49 59 chr13 26112641 26113047 -75760122 - MER93a LTR ERV1 0 402 1 245 169 220 68 chr13 26113047 26113129 -75760040 + L1M4 LINE L1 5000 5107 -1039 686 268 48 67 chr13 26113142 26113285 -75759884 - L1M4 LINE L1 -2414 3732 3588 1995 97 22 4 chr13 26113285 26113554 -75759615 - AluY SINE Alu -3 308 35 686 268 48 67 chr13 26113554 26113660 -75759509 - L1M4 LINE L1 -2558 3588 3482 2313 96 0 10 chr13 26113660 26113974 -75759195 - AluSx SINE Alu -1 311 1 686 268 48 67 chr13 26113974 26114201 -75758968 - L1M4 LINE L1 -2664 3482 3264 1306 277 106 10 chr13 26114224 26115062 -75758107 - L1M4 LINE L1 -2998 3148 2131 192 234 0 0 chr13 26115066 26115113 -75758056 + (TA)n Simple_repeat Simple_repeat 1 47 0 1530 187 0 8 chr13 26115251 26115513 -75757656 + AluJo SINE Alu 36 295 -17 2575 169 26 61 chr13 26115922 26115985 -75757184 - Charlie1 DNA MER1_type -76 2685 2621 1695 194 3 16 chr13 26115985 26116295 -75756874 - AluJb SINE Alu 0 312 7 2575 169 26 61 chr13 26116295 26116883 -75756286 - Charlie1 DNA MER1_type -140 2621 2057 950 200 17 0 chr13 26116883 26117063 -75756106 + MER5A DNA MER1_type 7 189 0 1225 319 133 33 chr13 26117746 26118593 -75754576 - L2 LINE L2 -685 2629 1698 715 262 50 130 chr13 26118699 26119122 -75754047 + L3 LINE CR1 796 1184 -393 386 275 125 0 chr13 26119122 26119242 -75753927 - L2 LINE L2 -2 3311 3177 1057 230 39 30 chr13 26119255 26119666 -75753503 + MLT1H LTR MaLR 3 539 -10 1098 289 113 42 chr13 26119685 26120242 -75752927 - L2 LINE L2 -164 3149 2530 2360 78 3 0 chr13 26120242 26120535 -75752634 + AluSp SINE Alu 1 294 -19 1098 289 113 42 chr13 26120535 26120672 -75752497 - L2 LINE L2 -783 2530 2404 309 290 77 13 chr13 26120668 26120823 -75752346 + L3 LINE CR1 1220 1384 -193 * 202 224 24 106 chr13 26120843 26120928 -75752241 - L2 LINE L2 -6 3307 3230 407 250 80 0 chr13 26120973 26121073 -75752096 + L3 LINE CR1 1467 1574 -3 585 174 42 7 chr13 26121138 26121282 -75751887 - L1MB8 LINE L1 -3 6175 6027 4341 205 81 60 chr13 26121308 26122745 -75750424 - L1M4 LINE L1 -1325 4821 3355 389 240 0 20 chr13 26122913 26123013 -75750156 - MER63 DNA MER1_type -271 789 692 2212 107 10 0 chr13 26123014 26123436 -75749733 + AluSp SINE Alu 1 425 0 307 150 0 190 chr13 26123439 26123539 -75749630 - MER63 DNA MER1_type -355 707 1 1097 278 75 21 chr13 26125573 26125962 -75747207 + HERV16 LTR ERVL 742 1151 -3845 2457 254 110 54 chr13 26126345 26126529 -75746640 + HAL1 LINE L1 798 970 -1537 1975 146 0 10 chr13 26126529 26126831 -75746338 + AluSx SINE Alu 1 299 -13 2457 254 110 54 chr13 26126831 26128084 -75745085 + HAL1 LINE L1 970 2319 -188 939 135 7 7 chr13 26128087 26128228 -75744941 + AluJb SINE Alu 1 141 -171 3111 101 26 0 chr13 26128357 26128781 -75744388 + MLT2A2 LTR ERVL 19 453 0 227 200 0 13 chr13 26128822 26128897 -75744272 + (CTA)n Simple_repeat Simple_repeat 1 74 0 2020 156 35 24 chr13 26129577 26129948 -75743221 + THE1C LTR MaLR 1 375 0 425 284 7 20 chr13 26130198 26130346 -75742823 - L2 LINE L2 -1 3312 3167 231 103 0 0 chr13 26130622 26130651 -75742518 + (A)n Simple_repeat Simple_repeat 1 29 0 225 0 0 0 chr13 26130656 26130681 -75742488 + (TA)n Simple_repeat Simple_repeat 1 25 0 2711 119 17 4 chr13 26130781 26131294 -75741875 - L1P5 LINE L1 -472 5679 5160 612 133 250 0 chr13 26131362 26131490 -75741679 + AluSq SINE Alu 134 293 -20 806 253 218 7 chr13 26131510 26131913 -75741256 - L1ME LINE L1 -2272 3808 3321 430 185 167 43 chr13 26131986 26132148 -75741021 - L1ME LINE L1 -3225 2855 2674 422 259 210 13 chr13 26132155 26132379 -75740790 - MER5C DNA MER1_type -56 268 1 1122 284 62 6 chr13 26132388 26132859 -75740310 - L1ME LINE L1 -3372 2708 2212 1018 206 45 45 chr13 26132913 26133199 -75739970 - L1ME1 LINE L1 -5 6161 5876 261 272 58 53 chr13 26133201 26133407 -75739762 - L1ME LINE L1 -5862 208 2 2122 148 3 0 chr13 26133547 26133857 -75739312 - AluJb SINE Alu -1 311 1 288 0 0 0 chr13 26136393 26136425 -75736744 + (CA)n Simple_repeat Simple_repeat 2 33 0 252 213 16 0 chr13 26136710 26136771 -75736398 + L3b LINE CR1 1135 1196 -387 220 161 0 54 chr13 26136818 26136874 -75736295 - L2 LINE L2 0 3313 3261 959 204 43 14 chr13 26137455 26137666 -75735503 - MER20 DNA MER1_type -1 218 2 227 189 271 3 chr13 26137951 26138040 -75735129 + L2 LINE L2 3151 3313 0 260 246 149 9 chr13 26138444 26138558 -75734611 + MIR SINE MIR 24 153 -109 1382 62 6 0 chr13 26138561 26138737 -75734432 + L1PA5 LINE L1 5974 6150 -4 479 255 103 37 chr13 26138905 26139271 -75733898 - MLT1G1 LTR MaLR -59 536 67 212 352 0 0 chr13 26139574 26139628 -75733541 + L2 LINE L2 3151 3204 -68 566 266 69 6 chr13 26141483 26141656 -75731513 - MIR SINE MIR -43 219 36 1102 87 0 0 chr13 26144349 26144487 -75728682 - AluSp/q SINE Alu -17 296 159 188 257 68 40 chr13 26146331 26146405 -75726764 + MIR SINE MIR 45 120 -88 405 314 73 14 chr13 26146445 26146665 -75726504 + MIR SINE MIR 20 252 -10 613 170 63 6 chr13 26147123 26147282 -75725887 - Charlie4 DNA MER1_type -54 1907 1740 335 281 260 5 chr13 26147841 26148037 -75725132 + MIR SINE MIR 6 251 -11 444 232 179 0 chr13 26148065 26148216 -75724953 + MER5B DNA MER1_type 1 178 0 633 247 13 0 chr13 26148691 26148841 -75724328 + MER5A DNA MER1_type 13 164 -25 451 252 43 36 chr13 26148857 26148996 -75724173 + MIR SINE MIR 9 148 -114 1679 187 82 12 chr13 26149025 26149195 -75723974 + Charlie4a DNA MER1_type 17 174 -1787 2624 59 0 0 chr13 26149195 26149500 -75723669 - AluY SINE Alu -2 309 5 1679 187 82 12 chr13 26149500 26149741 -75723428 + Charlie4a DNA MER1_type 174 457 -51 321 194 30 0 chr13 26150247 26150314 -75722855 - L2 LINE L2 -7 3306 3238 1804 211 27 17 chr13 26150430 26150837 -75722332 + MLT2D LTR ERVL 4 414 0 432 263 88 39 chr13 26151075 26151280 -75721889 - MIR SINE MIR -11 251 37 277 315 19 19 chr13 26151723 26151831 -75721338 - L3 LINE CR1 -1150 427 320 317 321 0 70 chr13 26153027 26153214 -75719955 + LTR67 LTR ERVL 13 186 -371 397 264 93 21 chr13 26153312 26153505 -75719664 + LTR67 LTR ERVL 351 557 0 258 240 0 0 chr13 26153726 26153776 -75719393 + MER3 DNA MER1_type 41 90 -119 * 313 118 0 105 chr13 26153738 26153803 -75719366 - MER3 DNA MER1_type -5 204 146 5336 65 20 39 chr13 26153803 26154037 -75719132 + L1MA1 LINE L1 5554 5791 -511 2194 110 0 0 chr13 26154037 26154345 -75718824 + AluSx SINE Alu 1 308 0 5336 65 20 39 chr13 26154345 26154872 -75718297 + L1MA1 LINE L1 5791 6302 0 607 271 6 0 chr13 26154893 26155059 -75718110 - MER3 DNA MER1_type -42 167 1 212 242 316 0 chr13 26155498 26155593 -75717576 + L2 LINE L2 3137 3261 -11 298 291 100 0 chr13 26155894 26156004 -75717165 + MIR SINE MIR 126 246 -16 21 0 0 0 chr13 26156285 26156306 -75716863 + AT_rich Low_complexity Low_complexity 1 21 0 206 132 0 26 chr13 26156471 26156509 -75716660 + (TCTCCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr13 26156725 26156752 -75716417 + (TC)n Simple_repeat Simple_repeat 2 28 0 312 278 24 18 chr13 26156754 26156923 -75716246 + (TCTCTG)n Simple_repeat Simple_repeat 2 171 0 201 337 23 0 chr13 26157385 26157471 -75715698 - MIR SINE MIR -97 165 78 360 43 0 0 chr13 26159211 26159257 -75713912 + (CA)n Simple_repeat Simple_repeat 1 46 0 4111 138 5 20 chr13 26160219 26160864 -75712305 - MER41B LTR ERV1 0 635 1 255 203 34 0 chr13 26161939 26161998 -75711171 + tRNA-Ile-ATT tRNA tRNA 14 74 -3 911 240 71 83 chr13 26162476 26162927 -75710242 - L2 LINE L2 -2 3311 2851 4815 129 30 13 chr13 26162927 26163697 -75709472 - LTR39 LTR ERV1 0 783 1 911 240 71 83 chr13 26163697 26163796 -75709373 - L2 LINE L2 -462 2851 2752 412 159 0 45 chr13 26164661 26164749 -75708420 - MER53 DNA DNA -3 186 103 2461 86 0 0 chr13 26164750 26165051 -75708118 + AluSq SINE Alu 1 301 -12 2290 104 0 7 chr13 26165061 26165370 -75707799 + AluSq SINE Alu 1 307 -6 227 151 19 19 chr13 26165385 26165438 -75707731 - MER53 DNA DNA -3 186 134 1175 126 0 91 chr13 26165542 26165741 -75707428 - AluSg/x SINE Alu -34 278 98 643 204 22 0 chr13 26165754 26165891 -75707278 - MER53 DNA DNA -44 145 6 363 359 21 11 chr13 26166577 26166811 -75706358 - MIR SINE MIR -14 248 14 2262 103 7 0 chr13 26168559 26168859 -75704310 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr13 26169542 26169571 -75703598 + AT_rich Low_complexity Low_complexity 1 29 0 330 243 201 14 chr13 26169771 26169915 -75703254 - MER5A DNA MER1_type -2 187 17 1568 190 96 25 chr13 26171557 26171993 -75701176 + MLT1C LTR MaLR 1 467 0 193 274 65 0 chr13 26172089 26172151 -75701018 + L2 LINE L2 3207 3272 0 548 276 131 0 chr13 26175570 26175769 -75697400 - MIR SINE MIR -1 261 37 227 323 196 5 chr13 26176023 26176243 -75696926 + L2 LINE L2 2576 2837 -477 1764 174 0 17 chr13 26176363 26176662 -75696507 + AluJo SINE Alu 1 294 -18 836 221 43 14 chr13 26176662 26176859 -75696310 - MLT1D LTR MaLR -299 206 1 207 271 0 0 chr13 26176897 26176945 -75696224 + L2 LINE L2 3240 3287 -26 185 259 17 17 chr13 26177512 26177570 -75695599 + MIR SINE MIR 152 209 -53 1324 199 112 13 chr13 26178160 26178472 -75694697 + MER2 DNA MER2_type 1 343 -1 438 300 0 0 chr13 26178518 26178618 -75694551 - L3 LINE CR1 -7 1570 1471 266 300 11 0 chr13 26179111 26179201 -75693968 - L1ME LINE L1 -274 5847 5757 450 313 21 26 chr13 26180502 26180694 -75692475 + MLT1K LTR MaLR 124 314 -274 1729 215 39 35 chr13 26181901 26182361 -75690808 - MLT1C LTR MaLR 0 467 6 340 315 18 9 chr13 26182562 26182673 -75690496 + MER81 DNA DNA 3 114 0 186 373 7 20 chr13 26183756 26183906 -75689263 + L2 LINE L2 2943 3090 -182 206 252 48 68 chr13 26184196 26184299 -75688870 + L2 LINE L2 3171 3271 -1 487 277 54 36 chr13 26184819 26184985 -75688184 + MIR3 SINE MIR 3 171 -37 312 295 36 0 chr13 26185516 26185628 -75687541 - MLT1L LTR MaLR -4 611 496 354 266 52 88 chr13 26185657 26185849 -75687320 - MLT1L LTR MaLR -204 411 227 791 356 21 23 chr13 26186655 26187082 -75686087 - LTR16B LTR ERVL 0 464 39 617 247 165 40 chr13 26187786 26188102 -75685067 - MLT1L LTR MaLR -10 554 240 22 0 0 0 chr13 26188792 26188814 -75684355 + AT_rich Low_complexity Low_complexity 1 22 0 11346 27 0 0 chr13 26189804 26191108 -75682061 - L1PA2 LINE L1 -1201 4945 3642 8275 19 0 0 chr13 26191108 26192308 -75680861 + L1PA2 LINE L1 4952 6151 -4 355 337 122 6 chr13 26192316 26192497 -75680672 + MIR SINE MIR 33 234 -28 2176 113 0 17 chr13 26192811 26193112 -75680057 - AluSg SINE Alu -14 296 1 29 47 0 0 chr13 26193289 26193332 -75679837 + AT_rich Low_complexity Low_complexity 1 43 0 7782 85 4 0 chr13 26193332 26195116 -75678053 - L1PA7 LINE L1 -5 6149 4358 1302 224 97 63 chr13 26196417 26196922 -75676247 - MER39 LTR ERV1 0 707 51 2838 231 76 22 chr13 26196948 26197167 -75676002 - MER72 LTR ERV1 0 722 516 2125 120 0 17 chr13 26197167 26197466 -75675703 + AluSq SINE Alu 1 294 -19 2838 231 76 22 chr13 26197466 26197931 -75675238 - MER72 LTR ERV1 -206 516 1 404 278 63 16 chr13 26197954 26198080 -75675089 + L2 LINE L2 3182 3313 0 231 321 112 15 chr13 26198410 26198544 -75674625 + MER20B DNA MER1_type 29 175 -608 2234 108 0 13 chr13 26198581 26198887 -75674282 - AluY SINE Alu -8 303 2 182 229 0 16 chr13 26198961 26199022 -75674147 + CT-rich Low_complexity Low_complexity 1 60 0 332 314 0 79 chr13 26199353 26199493 -75673676 + LTR33A LTR ERVL 5 133 -390 598 271 71 28 chr13 26199510 26199765 -75673404 + LTR33A LTR ERVL 250 515 -8 300 277 193 0 chr13 26199788 26199907 -75673262 - MIR SINE MIR -119 143 2 268 303 156 0 chr13 26200073 26200195 -75672974 + L3 LINE CR1 400 540 -1037 1956 124 67 0 chr13 26201545 26201828 -75671341 - AluSq SINE Alu -9 304 3 1115 221 109 22 chr13 26202050 26202416 -75670753 - MLT1C LTR MaLR -69 398 1 381 243 201 14 chr13 26204058 26204202 -75668967 + MER5A DNA MER1_type 17 187 -2 22 35 0 0 chr13 26204403 26204432 -75668737 + AT_rich Low_complexity Low_complexity 1 29 0 2226 104 7 0 chr13 26205115 26205413 -75667756 - AluSx SINE Alu -10 302 3 635 230 119 28 chr13 26205453 26205817 -75667352 + MLT1J2 LTR MaLR 13 396 -13 733 347 137 24 chr13 26205831 26206453 -75666716 + L3 LINE CR1 553 1244 -333 2382 188 25 4 chr13 26206460 26206934 -75666235 - L1MB7 LINE L1 -5 6179 5696 1571 113 0 0 chr13 26206964 26207168 -75666001 - L1PA8A LINE L1 -17 6114 5911 2211 176 44 26 chr13 26207172 26207216 -75665953 - L1MB7 LINE L1 -488 5690 5648 1980 158 40 53 chr13 26207216 26207596 -75665573 + THE1C LTR MaLR 1 375 0 2211 176 44 26 chr13 26207596 26208340 -75664829 - L1MB7 LINE L1 -530 5648 4890 2981 214 19 6 chr13 26208360 26209032 -75664137 - L1MB7 LINE L1 -3014 3132 2452 274 217 14 0 chr13 26209041 26209110 -75664059 - L1MEc LINE L1 -1542 4864 4795 5621 124 51 15 chr13 26209124 26210001 -75663168 - HSMAR2 DNA Mariner -2 1300 392 1176 123 22 0 chr13 26209988 26210167 -75663002 - HSMAR2 DNA Mariner -1119 183 1 * 903 282 63 36 chr13 26210168 26210722 -75662447 - L1MEc LINE L1 -1627 4779 4211 367 294 139 21 chr13 26210976 26211214 -75661955 + Charlie8 DNA MER1_type 1 266 -2151 1510 95 3 165 chr13 26212473 26212800 -75660369 + LTR12 LTR ERV1 1 274 -440 243 260 70 0 chr13 26212802 26212902 -75660267 + LTR30 LTR ERV1 537 643 -79 529 172 10 0 chr13 26212904 26213003 -75660166 + LTR12 LTR ERV1 615 714 0 944 292 123 6 chr13 26213722 26214236 -75658933 - L1MEc LINE L1 -2299 4107 3534 770 223 36 86 chr13 26214283 26214503 -75658666 + MER58A DNA MER1_type 4 212 -12 1714 255 81 50 chr13 26214523 26215583 -75657586 - L1MEc LINE L1 -2923 3483 2391 341 328 20 55 chr13 26215878 26215990 -75657179 - L1MEc LINE L1 -4576 2011 1908 2296 111 0 13 chr13 26215990 26216305 -75656864 + AluSq SINE Alu 1 311 -2 341 328 20 55 chr13 26216305 26216393 -75656776 - L1MEc LINE L1 -4679 1908 1818 324 327 40 15 chr13 26216559 26216758 -75656411 - L1MEc LINE L1 -4936 1460 1257 1079 150 0 0 chr13 26216758 26216918 -75656251 - FRAM SINE Alu -4 172 13 2302 156 28 49 chr13 26216975 26217448 -75655721 - L1MB8 LINE L1 0 6178 5716 208 246 14 29 chr13 26217580 26217649 -75655520 + T-rich Low_complexity Low_complexity 2 69 0 233 88 29 0 chr13 26217737 26217771 -75655398 - L1MEc LINE L1 -5489 907 873 265 277 39 39 chr13 26218091 26218221 -75654948 - L1MEc LINE L1 -5987 409 280 876 292 87 5 chr13 26218254 26218645 -75654524 + L1ME4a LINE L1 5502 5924 -197 314 201 97 65 chr13 26218662 26218816 -75654353 + L1ME4a LINE L1 5963 6121 0 2034 143 23 7 chr13 26219254 26219561 -75653608 + AluSx SINE Alu 1 312 0 266 107 196 0 chr13 26220445 26220501 -75652668 - L1MEc LINE L1 -5597 812 746 410 252 17 28 chr13 26220509 26220631 -75652538 - L1MEc LINE L1 -5753 656 460 682 232 57 11 chr13 26220654 26220831 -75652338 - L1MEc LINE L1 -6223 186 2 1223 284 147 8 chr13 26221450 26222194 -75650975 + L2 LINE L2 2461 3312 -1 2065 198 111 20 chr13 26222491 26223019 -75650150 - MLT1E2 LTR MaLR -1 625 72 223 348 0 0 chr13 26223519 26223588 -75649581 - MIR SINE MIR -169 93 25 2390 150 23 71 chr13 26224686 26225167 -75648002 + LTR32 LTR ERVL 14 471 0 413 353 0 0 chr13 26225355 26225471 -75647698 + L2 LINE L2 3153 3268 -4 245 328 23 8 chr13 26226448 26226579 -75646590 + CT-rich Low_complexity Low_complexity 1 133 0 558 343 33 6 chr13 26226591 26226772 -75646397 + MER91A DNA MER1_type 10 195 -1 307 246 29 0 chr13 26227285 26227354 -75645815 + L2 LINE L2 3201 3271 -1 207 181 169 60 chr13 26229381 26229464 -75643705 - MIR SINE MIR -81 127 36 2576 153 9 41 chr13 26230362 26230825 -75642344 + MLT2C2 LTR ERVL 2 449 -15 444 201 60 75 chr13 26230888 26231055 -75642114 + MIR SINE MIR 30 192 -61 2012 116 0 0 chr13 26231114 26231381 -75641788 + AluSx SINE Alu 31 297 -15 34 0 0 0 chr13 26232133 26232167 -75641002 + AT_rich Low_complexity Low_complexity 1 34 0 1013 181 88 15 chr13 26232186 26232390 -75640779 + MER20 DNA MER1_type 1 219 0 242 266 103 7 chr13 26233309 26233405 -75639764 - MIR3 SINE MIR -104 104 12 209 284 136 0 chr13 26233502 26233583 -75639586 + MIR SINE MIR 62 153 -109 391 265 122 0 chr13 26233752 26233899 -75639270 + MER103 DNA DNA 2 166 0 2311 136 67 84 chr13 26234158 26234620 -75638549 - LTR32 LTR ERVL 0 471 18 482 294 51 68 chr13 26234627 26234920 -75638249 + MLT1H LTR MaLR 249 536 -13 321 279 109 82 chr13 26234979 26235319 -75637850 - MLT1-int LTR MaLR 0 1371 1023 458 202 56 0 chr13 26236270 26236359 -75636810 - MLT1H LTR MaLR -13 536 443 2144 119 3 0 chr13 26236752 26237047 -75636122 + AluSx SINE Alu 2 297 -15 253 354 0 14 chr13 26237385 26237529 -75635640 + (TG)n Simple_repeat Simple_repeat 1 142 0 199 225 188 0 chr13 26238395 26238475 -75634694 - MIR SINE MIR -83 179 85 2320 97 0 3 chr13 26238624 26238924 -75634245 + AluSg SINE Alu 1 299 -11 293 326 66 22 chr13 26240628 26240809 -75632360 - MIR SINE MIR -34 228 40 1822 188 47 21 chr13 26241562 26241578 -75631591 + L1MB4 LINE L1 5788 5802 -378 2123 108 3 66 chr13 26241578 26241911 -75631258 - AluSx SINE Alu 0 312 1 1822 188 47 21 chr13 26241911 26242277 -75630892 + L1MB4 LINE L1 5802 6180 0 233 242 154 11 chr13 26242584 26242675 -75630494 - L2 LINE L2 -179 3093 2990 502 314 32 5 chr13 26243379 26243564 -75629605 + MIR SINE MIR 3 192 -70 210 256 0 0 chr13 26243628 26243671 -75629498 + L3 LINE CR1 1528 1570 -7 2181 93 29 35 chr13 26244468 26244781 -75628388 - AluSx SINE Alu -1 311 1 2043 136 30 0 chr13 26246210 26246512 -75626657 - AluSx SINE Alu -1 311 1 855 241 68 4 chr13 26247232 26247468 -75625701 + MIR SINE MIR 7 257 -5 207 290 241 35 chr13 26248236 26248381 -75624788 - MIR3 SINE MIR -12 196 22 414 265 98 7 chr13 26249044 26249331 -75623838 - L1M4 LINE L1 -2714 3432 3120 1631 194 0 25 chr13 26249339 26249654 -75623515 - AluJb SINE Alu -5 307 1 822 236 70 16 chr13 26249716 26250030 -75623139 - L1M4 LINE L1 -3132 3014 2684 378 0 0 0 chr13 26250675 26250717 -75622452 + (TG)n Simple_repeat Simple_repeat 2 43 0 242 316 19 19 chr13 26250718 26250876 -75622293 + GA-rich Low_complexity Low_complexity 2 159 0 493 234 48 6 chr13 26251198 26251365 -75621804 + L1ME4a LINE L1 5946 6119 -2 1975 87 4 19 chr13 26251472 26251736 -75621433 + AluSq SINE Alu 46 305 -8 326 290 93 16 chr13 26252917 26253100 -75620069 + MIR SINE MIR 16 212 -50 5526 164 17 19 chr13 26254762 26256648 -75616521 + L1PA16 LINE L1 4279 6155 -11 2213 125 0 13 chr13 26256648 26256959 -75616210 + AluSx SINE Alu 1 307 -5 631 299 111 29 chr13 26257927 26258369 -75614800 + HAL1 LINE L1 812 1289 -1218 462 285 14 0 chr13 26258684 26258828 -75614341 + (CACCAT)n Simple_repeat Simple_repeat 4 149 0 180 235 0 0 chr13 26258922 26258990 -75614179 + (CCA)n Simple_repeat Simple_repeat 1 68 0 229 345 17 35 chr13 26258996 26259170 -75613999 + (CACCAT)n Simple_repeat Simple_repeat 3 173 0 * 306 368 6 6 chr13 26259076 26259242 -75613927 + (CCA)n Simple_repeat Simple_repeat 1 166 0 476 320 6 0 chr13 26259272 26259450 -75613719 + (CCA)n Simple_repeat Simple_repeat 2 180 0 399 89 0 0 chr13 26260769 26260825 -75612344 + (T)n Simple_repeat Simple_repeat 1 56 0 315 228 32 106 chr13 26262755 26262878 -75610291 - MIR SINE MIR -70 192 79 355 219 23 78 chr13 26263010 26263138 -75610031 - MER5A DNA MER1_type -32 157 37 493 216 147 59 chr13 26263144 26263172 -75609997 + MIR SINE MIR 9 33 -229 2147 99 0 10 chr13 26263172 26263464 -75609705 + AluSg SINE Alu 1 289 -21 493 216 147 59 chr13 26263464 26263639 -75609530 + MIR SINE MIR 33 230 -32 400 264 189 0 chr13 26264222 26264370 -75608799 - MIR SINE MIR -73 189 14 263 272 111 12 chr13 26264932 26265013 -75608156 + MIR3 SINE MIR 66 154 -54 680 260 98 6 chr13 26265203 26265376 -75607793 - MIR SINE MIR -21 241 53 1974 144 3 0 chr13 26265602 26265893 -75607276 + AluJo SINE Alu 1 292 -20 188 182 23 0 chr13 26267330 26267374 -75605795 + GA-rich Low_complexity Low_complexity 1 45 0 351 270 37 37 chr13 26267392 26267555 -75605614 + GA-rich Low_complexity Low_complexity 2 164 0 267 79 0 0 chr13 26269638 26269676 -75603493 + (CA)n Simple_repeat Simple_repeat 2 39 0 1674 138 40 0 chr13 26272232 26272509 -75600660 + L1PA16 LINE L1 5692 5982 -184 924 216 0 0 chr13 26272610 26272795 -75600374 + L1PA16 LINE L1 5982 6166 0 21 36 0 0 chr13 26273430 26273458 -75599711 + AT_rich Low_complexity Low_complexity 1 28 0 1573 129 0 4 chr13 26273653 26273894 -75599275 - L1MA4 LINE L1 -11 6289 6050 234 0 0 0 chr13 26275455 26275481 -75597688 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr13 26275773 26275794 -75597375 + AT_rich Low_complexity Low_complexity 1 21 0 1644 273 182 37 chr13 26276075 26276299 -75596870 - L2 LINE L2 -41 3272 3082 2338 135 28 28 chr13 26276299 26276663 -75596506 + THE1B LTR MaLR 1 364 0 1644 273 182 37 chr13 26276663 26277856 -75595313 - L2 LINE L2 -231 3082 1652 214 181 114 133 chr13 26277928 26278033 -75595136 - MIR3 SINE MIR -24 184 82 256 357 105 32 chr13 26278882 26279159 -75594010 + L2 LINE L2 2879 3175 -97 1805 148 7 30 chr13 26279286 26279591 -75593578 - AluJo SINE Alu -11 301 4 2357 97 3 0 chr13 26282811 26283111 -75590058 + AluSx SINE Alu 1 301 -11 22 88 0 0 chr13 26283907 26283964 -75589205 + AT_rich Low_complexity Low_complexity 1 57 0 234 324 45 0 chr13 26287997 26288108 -75585061 - L2 LINE L2 -914 2400 2285 748 195 96 7 chr13 26288128 26288341 -75584828 + LTR40c LTR ERVL 30 268 -197 196 292 163 50 chr13 26289386 26289687 -75583482 + L2 LINE L2 1755 2089 -1225 314 327 29 0 chr13 26289943 26290047 -75583122 + MIR SINE MIR 47 153 -55 2342 114 0 0 chr13 26290214 26290520 -75582649 + AluSx SINE Alu 1 306 -6 791 161 0 0 chr13 26290823 26290947 -75582222 - FLAM_C SINE Alu -8 125 2 2724 13 0 0 chr13 26291148 26291450 -75581719 - AluYa5 SINE Alu -9 302 1 22 35 0 0 chr13 26291455 26291484 -75581685 + AT_rich Low_complexity Low_complexity 1 29 0 387 246 159 55 chr13 26291947 26292167 -75581002 - L1ME4a LINE L1 0 6121 5879 260 262 138 71 chr13 26293265 26293490 -75579679 - MIR SINE MIR 0 262 23 203 231 15 15 chr13 26294060 26294125 -75579044 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 818 262 17 0 chr13 26294204 26294376 -75578793 + MER5A DNA MER1_type 12 186 -3 202 302 75 0 chr13 26294441 26294494 -75578675 + MIR3 SINE MIR 132 188 -20 303 267 67 0 chr13 26297847 26297967 -75575202 + L1ME4a LINE L1 5695 5822 -299 5041 181 67 10 chr13 26297971 26300698 -75572471 + L1MA4 LINE L1 3310 6293 -7 392 252 141 0 chr13 26300680 26300922 -75572247 + L1ME4a LINE L1 5800 6075 -46 * 232 313 25 25 chr13 26302231 26302311 -75570858 + L2 LINE L2 3151 3230 -42 324 266 175 7 chr13 26302377 26302531 -75570638 - MIR SINE MIR -81 181 2 2195 98 7 23 chr13 26302734 26303039 -75570130 - AluSg SINE Alu -10 300 1 301 229 213 59 chr13 26304710 26304839 -75568330 + L1ME4a LINE L1 5675 5783 -338 3743 14 0 0 chr13 26304839 26305265 -75567904 + L1PA2 LINE L1 5727 6152 -3 301 229 213 59 chr13 26305265 26305358 -75567811 + L1ME4a LINE L1 5783 5860 -261 186 43 0 0 chr13 26305358 26305381 -75567788 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 301 229 213 59 chr13 26305381 26305462 -75567707 + L1ME4a LINE L1 5860 6026 -95 26 30 0 0 chr13 26305670 26305703 -75567466 + AT_rich Low_complexity Low_complexity 1 33 0 1188 155 204 12 chr13 26305797 26306042 -75567127 - AluSg1 SINE Alu -17 292 1 297 280 93 34 chr13 26306136 26306254 -75566915 - MIR SINE MIR -126 136 12 194 218 0 55 chr13 26306816 26306871 -75566298 - MIR SINE MIR -29 233 182 362 231 9 37 chr13 26306911 26307019 -75566150 - MIR SINE MIR -41 221 117 449 287 45 13 chr13 26307378 26307535 -75565634 - MIR SINE MIR -49 213 52 252 247 20 110 chr13 26307596 26307742 -75565427 + L2 LINE L2 3173 3305 -8 180 286 111 16 chr13 26308392 26308455 -75564714 + MER5A DNA MER1_type 59 127 -62 346 328 31 36 chr13 26314475 26314667 -75558502 + L1ME4a LINE L1 5726 5916 -205 189 0 0 0 chr13 26314932 26314953 -75558216 + (CA)n Simple_repeat Simple_repeat 2 22 0 368 138 0 50 chr13 26315358 26315438 -75557731 - L1PA3 LINE L1 -1 6154 6079 415 372 92 26 chr13 26315482 26315872 -75557297 - L1MC/D LINE L1 -2028 5780 5365 22 0 0 0 chr13 26315877 26315899 -75557270 + AT_rich Low_complexity Low_complexity 1 22 0 583 257 0 48 chr13 26315907 26316094 -75557075 + MER5B DNA MER1_type 1 178 0 223 396 0 0 chr13 26316120 26316216 -75556953 + L2 LINE L2 1822 1917 -1397 231 291 15 37 chr13 26316231 26316365 -75556804 + L2 LINE L2 2150 2280 -1034 197 313 0 31 chr13 26316766 26316821 -75556348 + L2 LINE L2 2980 3032 -240 512 365 26 0 chr13 26316821 26317010 -75556159 - MER91A DNA MER1_type -2 194 1 225 132 0 0 chr13 26317185 26317223 -75555946 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 188 234 0 43 chr13 26318213 26318260 -75554909 - MIR SINE MIR -115 147 103 294 29 0 0 chr13 26318839 26318874 -75554295 + (CA)n Simple_repeat Simple_repeat 2 36 0 309 228 69 40 chr13 26318956 26319057 -75554112 - L2 LINE L2 0 3272 3169 2342 190 168 25 chr13 26321214 26321981 -75551188 + MER97b DNA MER1_type? 2 878 -175 414 238 82 34 chr13 26322079 26322285 -75550884 + MER97c DNA MER1_type? 870 1085 -5 191 290 120 22 chr13 26322974 26323082 -75550087 - MIR SINE MIR -62 146 44 265 341 40 16 chr13 26323185 26323311 -75549858 - L3 LINE CR1 -1108 469 341 545 261 73 58 chr13 26325282 26325708 -75547461 - L1M4 LINE L1 -2130 4016 3581 1792 137 87 0 chr13 26325708 26325985 -75547184 - AluJb SINE Alu -7 305 5 545 261 73 58 chr13 26325985 26326021 -75547148 - L1M4 LINE L1 -2565 3581 3547 425 252 122 34 chr13 26377878 26378025 -75495144 + MLT1J2 LTR MaLR 284 443 -7 862 193 21 11 chr13 26378026 26378213 -75494956 - MER5A DNA MER1_type 0 189 1 337 285 41 41 chr13 26378535 26378658 -75494511 - MIR SINE MIR -21 241 119 485 275 40 13 chr13 26381609 26381758 -75491411 + MER5A DNA MER1_type 35 187 -2 408 149 284 35 chr13 26382935 26383076 -75490093 - MER5B DNA MER1_type 0 178 3 181 327 0 0 chr13 26383206 26383258 -75489911 - MIR SINE MIR -62 146 95 2095 122 20 0 chr13 26383323 26383617 -75489552 - AluSx SINE Alu -10 302 3 2338 93 13 3 chr13 26384221 26384522 -75488647 + AluSc SINE Alu 3 306 -3 238 49 24 24 chr13 26385000 26385041 -75488128 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 251 207 207 35 chr13 26385542 26385658 -75487511 + MIR SINE MIR 63 198 -64 186 283 50 0 chr13 26385737 26385797 -75487372 - L2 LINE L2 0 3272 3210 33 43 0 0 chr13 26387810 26387857 -75485312 + AT_rich Low_complexity Low_complexity 1 47 0 425 288 140 14 chr13 26387887 26388172 -75484997 - L1ME4a LINE L1 -74 6047 5727 200 200 0 0 chr13 26391067 26391102 -75482067 + A-rich Low_complexity Low_complexity 2 36 0 29 28 0 0 chr13 26391830 26391866 -75481303 + AT_rich Low_complexity Low_complexity 1 36 0 2511 64 0 0 chr13 26392021 26392316 -75480853 + AluY SINE Alu 1 295 -16 306 204 11 102 chr13 26393065 26393153 -75480016 - MIR SINE MIR -10 252 173 333 255 0 0 chr13 26393266 26393364 -75479805 + GA-rich Low_complexity Low_complexity 1 98 0 1075 136 15 97 chr13 26395448 26395654 -75477515 - MER5A DNA MER1_type 0 189 1 477 227 162 25 chr13 26396972 26397170 -75475999 + MIR SINE MIR 33 257 -5 344 296 150 23 chr13 26397164 26397384 -75475785 + MIR SINE MIR 15 262 0 * 186 103 0 0 chr13 26397437 26397466 -75475703 + (CA)n Simple_repeat Simple_repeat 1 29 0 346 363 76 56 chr13 26403123 26403426 -75469743 - L2 LINE L2 0 3272 2964 330 221 137 30 chr13 26403756 26403887 -75469282 - L2 LINE L2 -928 2386 2242 206 146 0 24 chr13 26404019 26404060 -75469109 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2202 131 34 0 chr13 26406460 26406788 -75466381 - MER1B DNA MER1_type 0 339 1 419 121 55 33 chr13 26407317 26407408 -75465761 - L1MC4a LINE L1 -1873 5935 5843 253 285 60 26 chr13 26407411 26407562 -75465607 - L1MC4a LINE L1 -400 5721 5566 2257 96 7 0 chr13 26407927 26408220 -75464949 - AluSx SINE Alu -17 295 1 571 312 30 30 chr13 26408240 26408286 -75464883 - MIR SINE MIR -15 247 202 989 217 27 0 chr13 26408286 26408470 -75464699 + MER5A DNA MER1_type 1 189 0 571 312 30 30 chr13 26408470 26408660 -75464509 - MIR SINE MIR -59 203 11 244 301 211 35 chr13 26408693 26408892 -75464277 - L2 LINE L2 -33 3239 3006 387 309 115 22 chr13 26409241 26409380 -75463789 + MIR3 SINE MIR 35 186 -22 329 212 0 0 chr13 26409393 26409459 -75463710 - MER58 DNA MER1_type 0 2420 2355 219 69 0 0 chr13 26410066 26410095 -75463074 + (A)n Simple_repeat Simple_repeat 1 29 0 206 250 0 21 chr13 26410623 26410671 -75462498 + L2 LINE L2 3263 3309 -4 508 303 12 18 chr13 26411027 26411192 -75461977 - MIR3 SINE MIR -7 201 38 191 263 184 18 chr13 26411789 26411903 -75461266 - L2 LINE L2 -225 3047 2915 231 36 0 0 chr13 26412036 26412064 -75461105 + (CA)n Simple_repeat Simple_repeat 2 29 0 521 269 64 18 chr13 26412066 26412237 -75460932 + MIR3 SINE MIR 21 199 -9 2692 39 0 0 chr13 26412974 26413282 -75459887 - AluY SINE Alu -3 308 1 418 310 131 34 chr13 26415276 26415313 -75457856 - L2 LINE L2 -176 3137 3105 2373 79 3 0 chr13 26415313 26415605 -75457564 + AluY SINE Alu 1 293 -18 418 310 131 34 chr13 26415605 26415960 -75457209 - L2 LINE L2 -208 3105 2705 465 275 88 92 chr13 26416017 26416530 -75456639 + MLT1J LTR MaLR 1 511 0 396 345 71 16 chr13 26416547 26416802 -75456367 - L2 LINE L2 -729 2585 2317 285 217 67 0 chr13 26420164 26420224 -75452945 - L2 LINE L2 -3 3269 3206 295 320 89 92 chr13 26422296 26422612 -75450557 + L2 LINE L2 2831 3145 -127 3087 162 19 32 chr13 26422727 26423259 -75449910 + Tigger7 DNA MER2_type 1 525 -208 695 120 0 0 chr13 26423253 26423345 -75449824 + Tigger7 DNA MER2_type 2396 2487 0 * 316 256 264 0 chr13 26423888 26424017 -75449152 + MER5A DNA MER1_type 27 189 0 346 154 10 135 chr13 26424354 26424458 -75448711 + LTR37A LTR ERV1 94 184 -242 693 179 37 0 chr13 26424479 26424613 -75448556 + LTR37A LTR ERV1 288 426 0 2418 80 3 0 chr13 26424742 26425042 -75448127 - AluSp SINE Alu -12 301 1 4173 11 0 4 chr13 26425686 26426179 -75446990 - L1PA2 LINE L1 0 6155 5702 21 0 0 0 chr13 26427202 26427223 -75445946 + AT_rich Low_complexity Low_complexity 1 21 0 272 234 85 78 chr13 26427255 26427396 -75445773 + L2 LINE L2 3171 3312 -1 182 74 0 37 chr13 26427519 26427546 -75445623 - L2 LINE L2 -20 3252 3227 235 312 62 63 chr13 26428887 26429263 -75443906 + L2 LINE L2 2675 3091 -181 1053 180 115 14 chr13 26432580 26432797 -75440372 - MER8 DNA MER2_type 0 239 1 493 299 7 0 chr13 26432898 26433042 -75440127 - MIR SINE MIR -2 260 116 306 0 0 0 chr13 26436454 26436488 -75436681 + (CA)n Simple_repeat Simple_repeat 2 35 0 187 297 0 31 chr13 26436588 26436652 -75436517 + L3b LINE CR1 1368 1429 -154 249 292 22 11 chr13 26437313 26437402 -75435767 + MIR3 SINE MIR 115 204 -4 294 308 29 19 chr13 26437503 26437607 -75435562 - MIR SINE MIR -111 151 47 2302 85 3 7 chr13 26440580 26440873 -75432296 - AluY SINE Alu -19 292 1 192 298 0 18 chr13 26440887 26440944 -75432225 + MIR3 SINE MIR 105 160 -48 678 268 14 43 chr13 26441012 26441221 -75431948 + MIR SINE MIR 58 260 -2 271 349 112 13 chr13 26441325 26441477 -75431692 - L2 LINE L2 -2 3270 3104 1770 176 52 67 chr13 26441560 26442025 -75431144 + MLT1C LTR MaLR 7 464 -3 184 194 0 60 chr13 26442053 26442120 -75431049 - L2 LINE L2 -209 3063 3001 660 268 18 0 chr13 26443063 26443227 -75429942 - MIR3 SINE MIR -1 207 41 365 335 42 32 chr13 26443270 26443554 -75429615 - L3 LINE CR1 -110 1467 1181 288 217 145 26 chr13 26443809 26443961 -75429208 - L3 LINE CR1 -607 970 801 2388 74 0 0 chr13 26444383 26444679 -75428490 + AluY SINE Alu 1 296 -15 228 370 92 8 chr13 26446227 26446346 -75426823 + L2 LINE L2 3143 3271 -1 491 230 7 61 chr13 26447217 26447365 -75425804 + MIR SINE MIR 113 252 -10 204 200 0 0 chr13 26447872 26447917 -75425252 + (CA)n Simple_repeat Simple_repeat 1 45 0 488 111 12 0 chr13 26448355 26448436 -75424733 + (TTCCC)n Simple_repeat Simple_repeat 3 84 0 314 96 0 19 chr13 26448468 26448520 -75424649 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2215 133 3 0 chr13 26448531 26448840 -75424329 - AluJb SINE Alu 0 312 3 227 271 0 0 chr13 26449527 26449586 -75423583 + GA-rich Low_complexity Low_complexity 1 59 0 233 307 150 20 chr13 26449730 26449883 -75423286 - L2 LINE L2 0 3272 3100 213 218 0 18 chr13 26449963 26450018 -75423151 + L2 LINE L2 3173 3226 -46 1635 171 38 97 chr13 26451343 26451764 -75421405 + MSTD LTR MaLR 1 396 0 2630 229 62 28 chr13 26452336 26453100 -75420069 + L1ME LINE L1 36 825 -5571 1368 237 40 42 chr13 26453112 26453568 -75419601 + MLT1D LTR MaLR 49 503 -2 2367 269 36 19 chr13 26453583 26454694 -75418475 + L1ME LINE L1 816 1945 -4451 5033 237 70 29 chr13 26454723 26456753 -75416416 + L1ME LINE L1 2101 4185 -2030 765 202 56 63 chr13 26456759 26457106 -75416063 + L1ME1 LINE L1 5829 6311 -1 781 273 97 2 chr13 26458285 26458507 -75414662 + MIR SINE MIR 11 262 0 418 329 75 4 chr13 26458695 26458925 -75414244 - MIR SINE MIR -2 260 10 307 308 64 29 chr13 26459635 26459807 -75413362 + L1ME LINE L1 5290 5467 -748 250 321 38 11 chr13 26459911 26460095 -75413074 + L1ME4a LINE L1 5827 6015 -106 24 32 0 0 chr13 26460140 26460171 -75412998 + AT_rich Low_complexity Low_complexity 1 31 0 2089 141 0 0 chr13 26460181 26460486 -75412683 + AluSx SINE Alu 1 305 -7 977 303 80 34 chr13 26461337 26461812 -75411357 - L2 LINE L2 0 3313 2817 451 225 12 12 chr13 26461971 26462140 -75411029 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 189 339 23 39 chr13 26462983 26463113 -75410056 - L2 LINE L2 -178 3094 2967 309 314 99 6 chr13 26463417 26463629 -75409540 + L1ME LINE L1 5602 5840 -350 269 239 15 0 chr13 26463936 26464003 -75409166 - MIR SINE MIR -98 164 97 193 305 130 45 chr13 26464927 26465127 -75408042 + L2 LINE L2 1618 1834 -1480 1044 321 124 35 chr13 26465337 26466605 -75406564 + L2 LINE L2 1832 3219 -94 2059 92 0 54 chr13 26466694 26466989 -75406180 + AluSq SINE Alu 1 279 -34 184 372 44 35 chr13 26467715 26467828 -75405341 - L2 LINE L2 -5 3308 3195 305 159 16 0 chr13 26467847 26467910 -75405259 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 2214 164 60 2 chr13 26468077 26468480 -75404689 + MSTB LTR MaLR 1 426 0 286 301 128 8 chr13 26469215 26469348 -75403821 + MER117 DNA MER1_type 7 155 -42 1879 158 3 30 chr13 26469532 26469836 -75403333 + AluJb SINE Alu 1 296 -16 2231 91 7 3 chr13 26470682 26470978 -75402191 - AluSq SINE Alu -16 297 1 1918 162 36 17 chr13 26472114 26472472 -75400697 - MLT1A1 LTR MaLR 0 365 1 308 209 15 0 chr13 26472823 26472890 -75400279 + Tigger2 DNA MER2_type 2 69 -2649 * 2365 158 11 25 chr13 26472888 26473091 -75400078 + Tigger2 DNA MER2_type 2280 2484 -234 1692 164 55 10 chr13 26473091 26473384 -75399785 - AluJb SINE Alu -6 306 1 2365 158 11 25 chr13 26473384 26473624 -75399545 + Tigger2 DNA MER2_type 2484 2717 -1 409 237 137 8 chr13 26473917 26474048 -75399121 - MIR SINE MIR -86 176 29 534 286 120 14 chr13 26475209 26475426 -75397743 + MIR SINE MIR 23 262 0 2590 258 52 22 chr13 26475533 26476190 -75396979 + L1MEc LINE L1 35 730 -5666 207 0 0 0 chr13 26476190 26476213 -75396956 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2590 258 52 22 chr13 26476213 26476502 -75396667 + L1MEc LINE L1 730 1009 -5387 219 252 39 10 chr13 26477294 26477397 -75395772 + (TA)n Simple_repeat Simple_repeat 2 107 0 23 0 0 0 chr13 26477567 26477590 -75395579 + AT_rich Low_complexity Low_complexity 1 23 0 1718 169 32 23 chr13 26477858 26478166 -75395003 + AluJb SINE Alu 1 311 -1 189 200 25 0 chr13 26478245 26478285 -75394884 + L2 LINE L2 3210 3250 -22 217 333 44 130 chr13 26478605 26479013 -75394156 + L2 LINE L2 2848 3220 -52 668 299 98 48 chr13 26479653 26480195 -75392974 + L2 LINE L2 2197 2765 -549 211 320 301 0 chr13 26480255 26480358 -75392811 + L2 LINE L2 3137 3270 -2 2548 47 0 3 chr13 26480790 26481090 -75392079 - AluY SINE Alu -12 299 1 1100 35 42 14 chr13 26481731 26481874 -75391295 - L1PA8 LINE L1 -8 6164 6018 339 254 37 15 chr13 26481888 26482022 -75391147 - MER103 DNA DNA -8 158 22 311 246 72 0 chr13 26482742 26482811 -75390358 + L3 LINE CR1 1478 1551 -26 229 342 34 0 chr13 26482981 26483130 -75390039 + L1ME LINE L1 4736 4889 -1257 22 0 0 0 chr13 26483338 26483360 -75389809 + AT_rich Low_complexity Low_complexity 1 22 0 323 347 7 0 chr13 26483543 26483690 -75389479 + L1ME LINE L1 5564 5711 -410 292 275 169 50 chr13 26483764 26483924 -75389245 - MIR SINE MIR -10 252 74 27 0 0 0 chr13 26483990 26484017 -75389152 + AT_rich Low_complexity Low_complexity 1 27 0 333 118 0 0 chr13 26484900 26484951 -75388218 + (CA)n Simple_repeat Simple_repeat 2 52 0 347 189 234 18 chr13 26485194 26485305 -75387864 + L2 LINE L2 3179 3313 0 183 80 0 0 chr13 26485292 26485317 -75387852 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 252 318 139 16 chr13 26485708 26485837 -75387332 + MIR SINE MIR 10 154 -108 357 86 0 0 chr13 26487982 26488040 -75385129 + (TA)n Simple_repeat Simple_repeat 1 58 0 25 31 0 0 chr13 26488263 26488295 -75384874 + AT_rich Low_complexity Low_complexity 1 32 0 6027 58 6 323 chr13 26489541 26491526 -75381643 - SVA Other Other 0 1386 32 271 0 0 49 chr13 26491527 26491568 -75381601 + (GGGAGA)n Simple_repeat Simple_repeat 1 39 0 2131 118 7 0 chr13 26492225 26492512 -75380657 + AluSx SINE Alu 1 289 -23 2291 114 7 0 chr13 26492544 26492851 -75380318 + AluSx SINE Alu 1 309 -3 1260 108 0 0 chr13 26493233 26493399 -75379770 + AluSg SINE Alu 38 203 -107 1397 196 0 91 chr13 26493539 26493881 -75379288 + AluJo SINE Alu 1 311 -1 2123 124 3 0 chr13 26493988 26494279 -75378890 + AluSx SINE Alu 1 292 -20 446 176 24 0 chr13 26495527 26495612 -75377557 - Tigger5 DNA MER2_type 0 2323 2237 508 193 0 0 chr13 26495623 26495711 -75377458 + Tigger5 DNA MER2_type 1 88 -2235 232 175 0 0 chr13 26495774 26495814 -75377355 - Tigger5 DNA MER2_type -2283 40 1 195 289 173 41 chr13 26495936 26496133 -75377036 + L2 LINE L2 3074 3296 -17 40 49 0 0 chr13 26496133 26496194 -75376975 + AT_rich Low_complexity Low_complexity 1 61 0 303 274 24 0 chr13 26496219 26496303 -75376866 + GA-rich Low_complexity Low_complexity 3 88 0 329 247 12 0 chr13 26497278 26497363 -75375806 + Tigger7 DNA MER2_type 2402 2487 0 354 267 53 82 chr13 26501551 26501757 -75371412 - MIR SINE MIR -24 238 39 340 340 54 14 chr13 26501892 26502039 -75371130 - L2 LINE L2 0 3313 3161 411 322 152 29 chr13 26505483 26505935 -75367234 + L2 LINE L2 2782 3288 -25 2617 150 78 23 chr13 26506024 26506550 -75366619 + MER74A LTR ERVL 2 556 -2 2004 135 10 16 chr13 26506657 26506969 -75366200 + AluSx SINE Alu 1 310 -2 753 133 66 46 chr13 26507257 26507344 -75365825 + L1MC1 LINE L1 6161 6254 -79 2416 119 86 28 chr13 26507344 26507774 -75365395 - MSTB2 LTR MaLR -2 455 1 753 133 66 46 chr13 26507774 26507837 -75365332 + L1MC1 LINE L1 6254 6314 -19 356 195 0 26 chr13 26508925 26509002 -75364167 - MER116 DNA Mariner -5 75 1 225 0 0 0 chr13 26509236 26509261 -75363908 + (T)n Simple_repeat Simple_repeat 1 25 0 182 348 22 44 chr13 26511872 26512007 -75361162 + L3 LINE CR1 1230 1361 -216 205 317 50 0 chr13 26512026 26512086 -75361083 - L2 LINE L2 -3 3310 3248 220 360 138 14 chr13 26512436 26512725 -75360444 - L2 LINE L2 -519 2795 2471 571 209 27 75 chr13 26512990 26513177 -75359992 - MER5B DNA MER1_type 0 178 1 1181 97 6 45 chr13 26513340 26513516 -75359653 - AluSq SINE Alu -11 302 134 1898 92 110 14 chr13 26513516 26513798 -75359371 - AluSg1 SINE Alu 0 309 1 294 366 71 0 chr13 26514015 26514127 -75359042 + L2 LINE L2 3134 3253 -19 928 168 77 10 chr13 26515197 26515405 -75357764 + L1MC4a LINE L1 7306 7527 -281 190 390 26 39 chr13 26517774 26517928 -75355241 - L2 LINE L2 -5 3267 3116 282 289 99 21 chr13 26518007 26518149 -75355020 - L2 LINE L2 -192 3080 2928 181 342 0 26 chr13 26518509 26518585 -75354584 - MER5A DNA MER1_type -40 149 76 301 260 130 84 chr13 26519227 26519381 -75353788 + MIR3 SINE MIR 43 203 -5 2460 74 0 0 chr13 26519424 26519721 -75353448 - AluY SINE Alu -14 297 1 189 224 75 45 chr13 26520576 26520643 -75352526 - L2 LINE L2 -16 3297 3229 224 286 0 0 chr13 26521368 26521417 -75351752 + L2 LINE L2 3246 3294 -19 380 161 74 12 chr13 26521504 26521585 -75351584 + L2 LINE L2 3223 3308 -5 21 0 0 0 chr13 26522566 26522587 -75350582 + AT_rich Low_complexity Low_complexity 1 21 0 2374 199 18 32 chr13 26524656 26525214 -75347955 - MER74A LTR ERVL -6 552 3 310 291 284 0 chr13 26525252 26525393 -75347776 - MER5A DNA MER1_type 0 189 9 351 302 81 29 chr13 26525468 26525640 -75347529 - MIR SINE MIR -16 246 66 733 265 113 4 chr13 26526102 26526340 -75346829 - L2 LINE L2 -50 3263 3000 3035 75 2 0 chr13 26526421 26526821 -75346348 - L1PA7 LINE L1 -1 6153 5753 2088 125 3 0 chr13 26526831 26527120 -75346049 - AluSx SINE Alu -22 290 1 198 0 0 0 chr13 26527678 26527700 -75345469 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 374 255 21 55 chr13 26528431 26528576 -75344593 - HAL1 LINE L1 -7 2500 2361 2275 254 80 50 chr13 26528739 26529904 -75343265 - HAL1 LINE L1 -115 2392 1193 1969 158 6 28 chr13 26529932 26530293 -75342876 + THE1B LTR MaLR 1 353 -11 379 256 42 74 chr13 26530343 26530628 -75342541 - HAL1 LINE L1 -1410 1097 822 365 302 118 96 chr13 26530929 26531469 -75341700 - HAL1 LINE L1 -1954 553 2 253 280 27 0 chr13 26531772 26531847 -75341322 + GA-rich Low_complexity Low_complexity 4 80 0 213 214 0 0 chr13 26532211 26532253 -75340916 + (TATG)n Simple_repeat Simple_repeat 2 43 0 219 309 155 0 chr13 26532571 26532655 -75340514 + MIR SINE MIR 152 248 -14 2277 116 0 6 chr13 26534011 26534322 -75338847 + AluSg SINE Alu 2 310 0 377 222 0 0 chr13 26534732 26534804 -75338365 + MER81 DNA DNA 1 72 -42 2499 59 20 0 chr13 26534816 26535120 -75338049 + AluY SINE Alu 2 311 0 396 258 168 39 chr13 26535335 26535490 -75337679 - MER5B DNA MER1_type -2 176 2 204 324 54 14 chr13 26535759 26535833 -75337336 - L2 LINE L2 -40 3273 3197 403 348 108 42 chr13 26538178 26538531 -75334638 - L2 LINE L2 0 3272 2897 3911 203 116 78 chr13 26538875 26539437 -75333732 - L1MC3 LINE L1 -12 7773 7234 312 212 61 0 chr13 26539437 26539503 -75333666 - MLT1F1 LTR MaLR -453 114 45 3911 203 116 78 chr13 26539503 26540191 -75332978 - L1MC3 LINE L1 -551 7234 6408 22 0 0 0 chr13 26540222 26540244 -75332925 + AT_rich Low_complexity Low_complexity 1 22 0 416 242 102 16 chr13 26540297 26540425 -75332744 + MLT1J2 LTR MaLR 35 173 -277 791 268 64 38 chr13 26540499 26540920 -75332249 + L1ME2 LINE L1 3873 4304 -1842 4125 215 84 41 chr13 26540925 26542480 -75330689 - L1MB7 LINE L1 -1 6168 4681 2244 87 3 3 chr13 26542480 26542766 -75330403 - AluSc SINE Alu -13 296 11 4125 215 84 41 chr13 26542766 26542806 -75330363 - L1MB7 LINE L1 -1488 4681 4644 782 160 0 8 chr13 26542806 26542937 -75330232 + FLAM_C SINE Alu 4 133 0 4125 215 84 41 chr13 26542937 26543758 -75329411 - L1MB7 LINE L1 -1525 4644 3649 2457 242 85 49 chr13 26543762 26544534 -75328635 + L1ME2 LINE L1 4322 5065 -1099 1179 117 0 0 chr13 26544534 26544714 -75328455 + (TA)n Simple_repeat Simple_repeat 1 180 0 2457 242 85 49 chr13 26544714 26545717 -75327452 + L1ME2 LINE L1 5065 6154 -10 2311 110 0 0 chr13 26545824 26546133 -75327036 + AluY SINE Alu 1 309 -2 21 57 0 0 chr13 26546258 26546293 -75326876 + AT_rich Low_complexity Low_complexity 1 35 0 203 100 0 50 chr13 26546306 26546346 -75326823 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 433 271 149 11 chr13 26546348 26546529 -75326640 + MIR SINE MIR 57 262 0 204 40 0 0 chr13 26550090 26550115 -75323054 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 26551339 26551360 -75321809 + AT_rich Low_complexity Low_complexity 1 21 0 227 223 0 96 chr13 26551363 26551457 -75321712 + L1ME4a LINE L1 5880 5964 -157 191 111 0 28 chr13 26551460 26551496 -75321673 + (TA)n Simple_repeat Simple_repeat 1 35 0 252 59 0 0 chr13 26552350 26552384 -75320785 + (T)n Simple_repeat Simple_repeat 1 34 0 2117 118 0 16 chr13 26554219 26554534 -75318635 - AluSq SINE Alu -3 310 1 231 288 0 17 chr13 26554534 26554593 -75318576 + MER20B DNA MER1_type 122 179 -604 264 333 33 8 chr13 26554683 26554803 -75318366 + L3b LINE CR1 1108 1230 -353 2179 170 30 24 chr13 26554933 26555398 -75317771 + L1MB1 LINE L1 3287 3754 -2392 4456 180 34 9 chr13 26555559 26556947 -75316222 + L1MB1 LINE L1 4744 6166 -2 227 343 52 52 chr13 26556981 26557115 -75316054 + L3b LINE CR1 1443 1576 -7 186 43 0 0 chr13 26557749 26557772 -75315397 + (CA)n Simple_repeat Simple_repeat 2 24 0 276 296 91 15 chr13 26558742 26558874 -75314295 - MIR SINE MIR -9 253 112 1931 147 6 13 chr13 26560089 26560224 -75312945 + AluSx SINE Alu 1 135 -177 2386 88 0 0 chr13 26560224 26560529 -75312640 + AluY SINE Alu 1 305 -6 1931 147 6 13 chr13 26560529 26560707 -75312462 + AluSx SINE Alu 135 312 0 565 311 96 0 chr13 26560969 26561178 -75311991 + MIR SINE MIR 26 254 -8 2337 91 7 3 chr13 26561186 26561483 -75311686 + AluSx SINE Alu 1 298 -14 1104 198 9 91 chr13 26562480 26562799 -75310370 + MLT1A1 LTR MaLR 56 348 -17 6438 205 98 60 chr13 26562809 26564237 -75308932 + MLT1A1-int LTR MaLR 1 1503 -232 1928 151 0 10 chr13 26564237 26564535 -75308634 - AluSx SINE Alu -15 297 3 6438 205 98 60 chr13 26564535 26564778 -75308391 + MLT1A1-int LTR MaLR 1503 1735 0 1081 223 57 79 chr13 26564781 26565149 -75308020 + MLT1A1 LTR MaLR 4 363 -2 2452 164 31 2 chr13 26565260 26565674 -75307495 - MSTB LTR MaLR 0 426 1 1972 128 24 0 chr13 26565782 26566071 -75307098 + AluSx SINE Alu 1 296 -16 795 265 38 93 chr13 26566384 26566675 -75306494 + MLT1E LTR MaLR 231 505 -88 484 288 118 26 chr13 26566772 26567078 -75306091 + MER93a LTR ERV1 58 391 -11 2191 119 58 73 chr13 26567085 26567498 -75305671 + MLT2D LTR ERVL 2 408 -6 2252 198 19 50 chr13 26567501 26567966 -75305203 - MLT2B3 LTR ERVL -23 531 81 349 97 28 83 chr13 26568078 26568109 -75305060 - MLT2B3 LTR ERVL -486 68 37 1974 132 46 32 chr13 26568109 26568479 -75304690 - THE1C LTR MaLR 0 375 1 349 97 28 83 chr13 26568479 26568519 -75304650 - MLT2B3 LTR ERVL -517 37 1 1918 240 107 56 chr13 26569491 26570671 -75302498 - L1ME2 LINE L1 -15 6149 4866 1704 176 13 10 chr13 26570671 26570977 -75302192 - AluJo SINE Alu -5 307 1 1918 240 107 56 chr13 26570977 26571332 -75301837 - L1ME2 LINE L1 -1298 4866 4530 1388 244 102 59 chr13 26571337 26572119 -75301050 - L1ME2 LINE L1 -1778 4368 3553 21 36 0 0 chr13 26623820 26623848 -75249321 + AT_rich Low_complexity Low_complexity 1 28 0 447 246 85 106 chr13 26624055 26624291 -75248878 + MIR SINE MIR 21 251 -11 1554 169 86 0 chr13 26624439 26624706 -75248463 + AluJb SINE Alu 1 290 -22 360 133 0 0 chr13 26624706 26624766 -75248403 + (GGGA)n Simple_repeat Simple_repeat 1 60 0 341 172 62 0 chr13 26624781 26624845 -75248324 + L1M1 LINE L1 14 81 -7484 * 6211 178 36 36 chr13 26624843 26626876 -75246293 + L1M1 LINE L1 3128 5183 -2382 1278 112 28 0 chr13 26626876 26627091 -75246078 + L1M1 LINE L1 5854 6074 -1491 379 65 65 0 chr13 26627091 26627151 -75246018 + L1MA3 LINE L1 6240 6305 0 679 317 106 26 chr13 26627629 26628045 -75245124 - L2 LINE L2 0 3313 2865 22 35 0 0 chr13 26629144 26629173 -75243996 + AT_rich Low_complexity Low_complexity 1 29 0 366 229 67 19 chr13 26631544 26631649 -75241520 + MER117 DNA MER1_type 5 114 -83 243 182 39 13 chr13 26632038 26632115 -75241054 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 223 284 108 27 chr13 26632722 26632796 -75240373 + L2 LINE L2 3197 3276 -37 253 328 99 59 chr13 26632808 26633382 -75239787 - L2 LINE L2 -850 2464 1868 2159 77 7 44 chr13 26634129 26634449 -75238720 + AluSp SINE Alu 1 309 0 306 246 15 0 chr13 26634504 26634569 -75238600 + MIR3 SINE MIR 117 182 -26 192 77 0 0 chr13 26634825 26634851 -75238318 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 213 39 0 0 chr13 26636352 26636378 -75236791 + (CACAA)n Simple_repeat Simple_repeat 3 28 0 561 173 58 79 chr13 26639190 26639329 -75233840 + MER33 DNA MER1_type 1 136 -188 * 660 189 27 7 chr13 26639318 26639466 -75233703 + MLT1D LTR MaLR 353 503 -2 305 200 15 0 chr13 26639466 26639531 -75233638 + MER33 DNA MER1_type 297 362 -1 351 291 34 0 chr13 26639535 26639652 -75233517 + L2 LINE L2 3192 3312 -1 279 253 0 53 chr13 26639690 26639765 -75233404 - L2 LINE L2 0 3313 3243 428 183 20 74 chr13 26639765 26639862 -75233307 + L1MB5 LINE L1 5961 6049 -125 2362 102 0 0 chr13 26639862 26640165 -75233004 - AluSx SINE Alu -9 303 1 428 183 20 74 chr13 26640165 26640187 -75232982 + L1MB5 LINE L1 6049 6071 -103 547 200 37 126 chr13 26640263 26640478 -75232691 - MLT1A1 LTR MaLR -169 196 1 416 269 149 62 chr13 26641260 26641535 -75231634 + L2 LINE L2 3015 3313 0 521 206 136 39 chr13 26641756 26641911 -75231258 + MIR SINE MIR 82 251 -11 374 369 78 18 chr13 26641920 26642137 -75231032 + L3 LINE CR1 1329 1558 -19 2830 16 0 0 chr13 26643856 26644165 -75229004 - AluYa5 SINE Alu -2 309 1 461 263 11 16 chr13 26644399 26644536 -75228633 + MER20B DNA MER1_type 58 197 -22 321 303 67 52 chr13 26644721 26644988 -75228181 + L1M4 LINE L1 2670 2940 -3206 1346 161 0 9 chr13 26645300 26645523 -75227646 - AluJb SINE Alu -5 307 87 264 158 0 0 chr13 26645708 26645765 -75227404 + (CA)n Simple_repeat Simple_repeat 2 58 0 448 267 46 59 chr13 26645765 26646068 -75227101 + L1M4 LINE L1 3524 3822 -2324 2274 203 37 4 chr13 26647690 26648179 -75224990 + MLT1D LTR MaLR 1 505 0 2287 98 0 3 chr13 26648304 26648610 -75224559 - AluSg SINE Alu -5 305 1 841 141 6 24 chr13 26648618 26648788 -75224381 - L1MA6 LINE L1 0 6300 6134 2173 89 7 36 chr13 26649524 26649826 -75223343 + AluSc SINE Alu 9 301 -8 381 344 73 38 chr13 26649961 26650249 -75222920 - L3 LINE CR1 -343 1234 937 495 298 73 87 chr13 26651721 26652258 -75220911 + L1MEd LINE L1 23 566 -5553 1338 201 21 28 chr13 26652258 26652541 -75220628 - AluJo SINE Alu -31 281 1 495 298 73 87 chr13 26652541 26653105 -75220064 + L1MEd LINE L1 566 1109 -5010 2073 128 0 13 chr13 26653226 26653524 -75219645 + AluSc SINE Alu 1 294 -15 871 272 107 46 chr13 26653542 26654167 -75219002 + L1ME3A LINE L1 5294 5956 -214 207 0 0 0 chr13 26656203 26656226 -75216943 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 495 0 0 0 chr13 26656403 26656458 -75216711 + (CA)n Simple_repeat Simple_repeat 2 56 0 605 295 52 19 chr13 26657287 26657497 -75215672 - MIR SINE MIR -14 248 32 392 282 8 8 chr13 26657587 26657704 -75215465 + LTR16B LTR ERVL 35 151 -313 463 77 0 0 chr13 26658146 26658211 -75214958 - L1PA6 LINE L1 -1 6153 6089 316 265 49 29 chr13 26659546 26659648 -75213521 - L2 LINE L2 -7 3265 3162 1902 147 119 16 chr13 26659648 26660036 -75213133 - MSTA LTR MaLR 0 428 1 1592 274 100 10 chr13 26660150 26660782 -75212387 + L2 LINE L2 2440 3151 -162 329 274 12 0 chr13 26660825 26660909 -75212260 - MER63A DNA MER1_type -26 184 100 474 259 38 8 chr13 26660992 26661123 -75212046 + L2 LINE L2 3178 3312 -1 17716 141 29 20 chr13 26661823 26664717 -75208452 + L1MA3 LINE L1 1 2921 -4644 400 215 56 0 chr13 26664715 26664822 -75208347 + L1MA3 LINE L1 4246 4358 -3207 * 362 236 21 126 chr13 26664986 26665177 -75207992 + L1ME LINE L1 5254 5424 -2384 288 284 99 33 chr13 26665282 26665525 -75207644 + L1ME LINE L1 5496 5754 -367 203 0 0 36 chr13 26666094 26666122 -75207047 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7555 29 18 0 chr13 26666122 26667086 -75206083 - L1PA3 LINE L1 -6 6149 5182 276 206 0 0 chr13 26667087 26667155 -75206014 + L1MA3 LINE L1 4349 4416 -3149 1456 179 19 0 chr13 26667155 26667423 -75205746 - L1MA3 LINE L1 -2094 5471 5199 6700 136 17 32 chr13 26667430 26669463 -75203706 + L1MA3 LINE L1 5486 7480 -244 1731 136 39 11 chr13 26669463 26669743 -75203426 + AluJb SINE Alu 1 288 -24 6700 136 17 32 chr13 26669743 26669985 -75203184 + L1MA3 LINE L1 7480 7724 0 195 386 68 11 chr13 26671057 26671145 -75202024 - L2 LINE L2 -32 3240 3148 278 191 0 0 chr13 26671763 26671810 -75201359 + L2 LINE L2 3210 3256 -16 436 169 102 8 chr13 26675712 26675830 -75197339 + L1MA8 LINE L1 6161 6289 -2 716 140 67 61 chr13 26676034 26676198 -75196971 + L1MB8 LINE L1 6008 6172 -6 1110 179 93 4 chr13 26676211 26676490 -75196679 + L1 LINE L1 3183 3486 -2660 1181 123 15 20 chr13 26676490 26676685 -75196484 + AluSg/x SINE Alu 115 308 -4 215 233 0 0 chr13 26677305 26677348 -75195821 + CT-rich Low_complexity Low_complexity 2 44 0 608 245 155 0 chr13 26677561 26677716 -75195453 + MER5A DNA MER1_type 11 189 0 541 254 56 0 chr13 26678144 26678286 -75194883 + MER69A DNA AcHobo 28 177 0 3755 48 0 6 chr13 26678326 26678800 -75194369 - L1PA7 LINE L1 -8 6146 5676 405 172 0 0 chr13 26678810 26678932 -75194237 + (TA)n Simple_repeat Simple_repeat 1 122 0 2161 125 3 0 chr13 26678932 26679229 -75193940 - AluSx SINE Alu -14 298 1 195 129 0 0 chr13 26679653 26679684 -75193485 + (CA)n Simple_repeat Simple_repeat 2 32 0 318 352 57 6 chr13 26679906 26680082 -75193087 - L1ME LINE L1 -320 5801 5617 14506 189 74 16 chr13 26680271 26680619 -75192550 - L1PB1 LINE L1 -316 6551 6225 234 0 0 0 chr13 26680619 26680645 -75192524 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14506 189 74 16 chr13 26680645 26686476 -75186693 - L1PB1 LINE L1 -642 6225 6 6641 233 64 17 chr13 26686490 26692327 -75180842 - L1MDa LINE L1 -421 6215 17 257 194 0 30 chr13 26693548 26693615 -75179554 + (CATA)n Simple_repeat Simple_repeat 2 66 0 745 247 101 22 chr13 26693615 26693636 -75179533 - L1ME4a LINE L1 -157 5964 5946 297 109 0 0 chr13 26693636 26693682 -75179487 + (TG)n Simple_repeat Simple_repeat 2 47 0 745 247 101 22 chr13 26693682 26693976 -75179193 - L1ME4a LINE L1 -175 5946 5624 311 317 45 55 chr13 26694793 26695102 -75178067 - L1ME4a LINE L1 -801 5345 5040 2300 96 0 3 chr13 26695181 26695474 -75177695 - AluSq SINE Alu -21 292 1 30 27 0 0 chr13 26695476 26695513 -75177656 + AT_rich Low_complexity Low_complexity 1 37 0 848 324 25 16 chr13 26695933 26696378 -75176791 + L1MC4a LINE L1 5453 5901 -1907 285 29 0 0 chr13 26696408 26696442 -75176727 + (TG)n Simple_repeat Simple_repeat 1 34 0 31 26 0 0 chr13 26696670 26696708 -75176461 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 26698193 26698221 -75174948 + AT_rich Low_complexity Low_complexity 1 28 0 191 133 22 0 chr13 26698469 26698514 -75174655 + GA-rich Low_complexity Low_complexity 2 47 0 206 264 38 75 chr13 26699098 26699204 -75173965 + MIR SINE MIR 33 134 -74 265 331 90 35 chr13 26699635 26699780 -75173389 + MIR3 SINE MIR 19 171 -37 2230 91 10 3 chr13 26701747 26702045 -75171124 + AluSx SINE Alu 1 300 -12 2038 148 3 0 chr13 26702473 26702771 -75170398 + AluSx SINE Alu 1 299 -13 292 206 0 15 chr13 26703023 26703091 -75170078 + HsTC2 DNA Tc2 8 74 -1824 21 57 0 0 chr13 26703523 26703558 -75169611 + AT_rich Low_complexity Low_complexity 1 35 0 528 122 0 0 chr13 26703581 26703663 -75169506 + (CA)n Simple_repeat Simple_repeat 2 83 0 2318 84 10 10 chr13 26704248 26704558 -75168611 - AluY SINE Alu -1 310 1 465 225 95 35 chr13 26704692 26704861 -75168308 - MIR SINE MIR -10 252 74 184 299 0 75 chr13 26705832 26705899 -75167270 + L2 LINE L2 3116 3177 -95 232 196 0 0 chr13 26706337 26706388 -75166781 + L1MC4 LINE L1 6653 6703 -1339 186 208 0 0 chr13 26706388 26706436 -75166733 + (TA)n Simple_repeat Simple_repeat 2 49 0 369 279 95 39 chr13 26707368 26707557 -75165612 - MIR SINE MIR -65 143 1 23 33 0 0 chr13 26707754 26707784 -75165385 + AT_rich Low_complexity Low_complexity 1 30 0 1280 230 16 23 chr13 26707880 26708184 -75164985 - AluJo SINE Alu -10 302 1 1447 245 35 38 chr13 26708596 26709049 -75164120 + LTR40a LTR ERVL 68 519 0 196 312 183 0 chr13 26709646 26709739 -75163430 - MIR SINE MIR -83 125 16 704 236 15 84 chr13 26709839 26710042 -75163127 + MIR SINE MIR 8 196 -66 1722 214 47 31 chr13 26710392 26710879 -75162290 + MLT1D LTR MaLR 1 495 -10 402 267 51 90 chr13 26710975 26711286 -75161883 - L2 LINE L2 0 3313 3015 299 304 31 99 chr13 26712297 26712458 -75160711 + MIR SINE MIR 24 173 -89 624 213 77 12 chr13 26712943 26713130 -75160039 - MER58C DNA MER1_type 0 215 1 2065 124 3 3 chr13 26713280 26713578 -75159591 + AluSq SINE Alu 1 298 -15 261 224 0 31 chr13 26713943 26714041 -75159128 + GA-rich Low_complexity Low_complexity 2 96 0 2075 126 0 3 chr13 26714138 26714431 -75158738 + AluSx SINE Alu 1 292 -20 2081 108 17 7 chr13 26714431 26714719 -75158450 + AluSp SINE Alu 17 307 -6 239 376 40 0 chr13 26714932 26715033 -75158136 - MER91A DNA MER1_type -45 151 47 2122 181 12 2 chr13 26716732 26717140 -75156029 + MLT2C2 LTR ERVL 1 412 -52 23 54 0 0 chr13 26718903 26718940 -75154229 + AT_rich Low_complexity Low_complexity 1 37 0 1223 242 75 16 chr13 26721032 26721591 -75151578 - HAL1 LINE L1 -171 2336 1701 529 283 96 33 chr13 26721626 26721932 -75151237 - HAL1 LINE L1 -1164 1343 1058 2121 128 0 3 chr13 26721932 26722228 -75150941 + AluSx SINE Alu 1 295 -17 529 283 96 33 chr13 26722228 26723101 -75150068 - HAL1 LINE L1 -1449 1058 14 242 195 0 0 chr13 26724568 26724609 -75148560 - L2 LINE L2 -8 3264 3224 183 352 0 34 chr13 26726170 26726258 -75146911 + L2 LINE L2 2994 3078 -194 198 103 0 0 chr13 26726396 26726425 -75146744 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 762 103 37 7 chr13 26728717 26728853 -75144316 - Tigger1 DNA MER2_type -74 2344 2205 * 872 166 0 13 chr13 26728847 26729004 -75144165 - Tigger1 DNA MER2_type -2263 155 1 1834 182 92 14 chr13 26729015 26729448 -75143721 + MLT1C LTR MaLR 1 467 0 484 253 187 0 chr13 26730873 26731023 -75142146 + MER5A DNA MER1_type 9 186 -3 180 250 0 97 chr13 26733149 26733221 -75139948 + L2 LINE L2 3249 3313 0 2025 114 40 0 chr13 26733297 26733609 -75139560 + AluSx SINE Alu 1 323 0 1758 128 94 26 chr13 26733685 26734036 -75139133 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr13 26734647 26734680 -75138489 + AT_rich Low_complexity Low_complexity 1 33 0 657 236 62 36 chr13 26735054 26735330 -75137839 + MER39 LTR ERV1 425 707 0 497 294 78 39 chr13 26736879 26737083 -75136086 - L2 LINE L2 -3 3310 3099 678 309 240 17 chr13 26737111 26737142 -75136027 - L2 LINE L2 -351 2963 2940 2609 174 10 14 chr13 26737142 26737647 -75135522 + L1MC1 LINE L1 5830 6332 -1 678 309 240 17 chr13 26737647 26738081 -75135088 - L2 LINE L2 -374 2940 2394 274 294 0 0 chr13 26738209 26738277 -75134892 + (TA)n Simple_repeat Simple_repeat 2 69 0 216 306 26 45 chr13 26738342 26738487 -75134682 - MIR SINE MIR -63 145 24 283 311 153 22 chr13 26740400 26740583 -75132586 - MIR SINE MIR -50 212 6 345 354 67 12 chr13 26741307 26741471 -75131698 + MIR SINE MIR 28 200 -62 380 330 0 0 chr13 26742308 26742420 -75130749 + MIR3 SINE MIR 87 198 -10 819 296 20 2 chr13 26743226 26743465 -75129704 + MIR SINE MIR 4 244 -18 208 186 23 0 chr13 26743674 26743717 -75129452 + GA-rich Low_complexity Low_complexity 3 46 0 337 366 49 24 chr13 26743959 26744123 -75129046 - MIR3 SINE MIR -28 180 13 378 0 0 0 chr13 26744408 26744450 -75128719 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr13 26744782 26744805 -75128364 + AT_rich Low_complexity Low_complexity 1 23 0 657 36 0 0 chr13 26746751 26746835 -75126334 + AluSg/x SINE Alu 219 302 -8 324 0 0 0 chr13 26748595 26748631 -75124538 + (CA)n Simple_repeat Simple_repeat 2 37 0 497 308 35 30 chr13 26748879 26749048 -75124121 - MIR SINE MIR -51 211 42 382 322 24 97 chr13 26750376 26750749 -75122420 - L2 LINE L2 -27 3245 2900 272 257 0 40 chr13 26750786 26750860 -75122309 - L2 LINE L2 -538 2776 2706 790 318 69 40 chr13 26750954 26751148 -75122021 - L2 LINE L2 -609 2705 2518 953 243 14 9 chr13 26751148 26751370 -75121799 - MER58A DNA MER1_type -1 223 1 790 318 69 40 chr13 26751370 26751625 -75121544 - L2 LINE L2 -796 2518 2243 294 214 20 51 chr13 26751843 26751941 -75121228 - MLT1J2 LTR MaLR -354 96 2 21 36 0 0 chr13 26752964 26752992 -75120177 + AT_rich Low_complexity Low_complexity 1 28 0 2270 106 0 0 chr13 26754415 26754716 -75118453 - AluY SINE Alu -10 301 1 234 324 52 0 chr13 26754923 26755059 -75118110 + L1P LINE L1 4910 5052 -1094 329 287 231 12 chr13 26755296 26755620 -75117549 + L1ME4a LINE L1 5260 5654 -467 22 70 0 0 chr13 26755739 26755782 -75117387 + AT_rich Low_complexity Low_complexity 1 43 0 305 261 39 46 chr13 26755823 26755976 -75117193 + L1ME4a LINE L1 5964 6115 -6 304 235 0 0 chr13 26757563 26757631 -75115538 + MER92C LTR ERV1 483 550 -4 200 214 0 0 chr13 26758022 26758064 -75115105 + MIR SINE MIR 99 140 -122 2340 103 0 0 chr13 26758158 26758460 -75114709 - AluSx SINE Alu -10 302 1 3551 155 11 16 chr13 26758476 26759113 -75114056 - L1MB7 LINE L1 0 6184 5551 22 56 0 0 chr13 26759508 26759544 -75113625 + AT_rich Low_complexity Low_complexity 1 36 0 243 389 24 8 chr13 26759557 26759683 -75113486 - L2 LINE L2 -219 3053 2926 356 338 29 38 chr13 26759738 26759978 -75113191 - L2 LINE L2 -815 2499 2262 1232 134 51 24 chr13 26762531 26762784 -75110385 - L1MA4 LINE L1 -15 6285 6026 318 203 159 11 chr13 26763195 26763327 -75109842 - L1MD3 LINE L1 -11 7984 6192 5370 168 39 26 chr13 26763328 26764487 -75108682 + Ricksha_a DNA DNA 35 1176 -10 1364 191 78 58 chr13 26764494 26764908 -75108261 - L1MD3 LINE L1 -140 7855 5808 1587 203 75 17 chr13 26765243 26765379 -75107790 + MLT1A1 LTR MaLR 1 128 -237 2382 99 0 6 chr13 26765379 26765693 -75107476 + AluSq SINE Alu 1 312 -1 1587 203 75 17 chr13 26765693 26765901 -75107268 + MLT1A1 LTR MaLR 128 365 0 25 0 0 0 chr13 26766560 26766585 -75106584 + AT_rich Low_complexity Low_complexity 1 25 0 380 274 27 41 chr13 26766884 26767030 -75106139 + L1MDa LINE L1 2440 2583 -3957 512 282 135 71 chr13 26767032 26767468 -75105701 + L1ME LINE L1 141 604 -5601 247 220 77 18 chr13 26767754 26767922 -75105247 + L1ME LINE L1 2086 2263 -4133 513 132 0 0 chr13 26767933 26768009 -75105160 + AluSg/x SINE Alu 218 293 -16 198 0 0 0 chr13 26768015 26768037 -75105132 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 266 50 25 0 chr13 26768036 26768076 -75105093 + (TA)n Simple_repeat Simple_repeat 1 41 0 1904 248 84 29 chr13 26768080 26769079 -75104090 + L1ME LINE L1 2233 3286 -2929 2536 252 62 44 chr13 26769083 26770171 -75102998 + L1ME LINE L1 3669 4783 -1432 2448 66 3 0 chr13 26770171 26770474 -75102695 + AluSc SINE Alu 5 308 -1 2536 252 62 44 chr13 26770474 26770609 -75102560 + L1ME LINE L1 4783 4914 -1301 4393 150 13 4 chr13 26770609 26771314 -75101855 + MER50 LTR ERV1 1 711 -23 585 238 104 19 chr13 26771323 26771646 -75101523 + L1ME LINE L1 4919 5284 -931 346 211 105 34 chr13 26771730 26771941 -75101228 + L1ME LINE L1 5285 5506 -725 422 279 87 38 chr13 26771956 26772139 -75101030 + L1M4 LINE L1 2732 2923 -3223 205 164 18 18 chr13 26772289 26772344 -75100825 + GA-rich Low_complexity Low_complexity 3 57 0 511 314 81 50 chr13 26772465 26772847 -75100322 + L1M4 LINE L1 3385 3778 -2368 507 265 35 4 chr13 26772996 26773226 -75099943 + L1M4 LINE L1 3816 4052 -2094 36596 34 3 30 chr13 26773636 26779175 -75093994 - L1PA4 LINE L1 -11 6161 835 683 110 0 0 chr13 26779173 26779273 -75093896 - L1PA4 LINE L1 -6043 103 4 * 5806 172 13 9 chr13 26779317 26781346 -75091823 + L1PA16 LINE L1 4125 6157 -9 1098 64 0 0 chr13 26781367 26781507 -75091662 + AluY SINE Alu 172 311 0 414 0 0 0 chr13 26782103 26782149 -75091020 + (CA)n Simple_repeat Simple_repeat 2 47 0 2541 176 61 32 chr13 26783325 26784177 -75088992 + MER45B DNA AcHobo 1 942 -639 2752 17 0 0 chr13 26784177 26784478 -75088691 - AluYa5 SINE Alu -10 301 1 2541 176 61 32 chr13 26784478 26784577 -75088592 + MER45B DNA AcHobo 942 1037 -3 219 374 35 17 chr13 26784579 26784694 -75088475 + L2 LINE L2 3188 3304 -9 329 315 47 16 chr13 26784726 26784853 -75088316 + L3 LINE CR1 1006 1136 -441 272 339 36 18 chr13 26784855 26784967 -75088202 + MIR SINE MIR 48 161 -101 7815 85 9 1 chr13 26785185 26786314 -75086855 - L1P LINE L1 -2758 3388 2251 381 279 50 37 chr13 26786426 26786587 -75086582 - L1MC4a LINE L1 -1945 5863 5701 192 383 0 82 chr13 26787183 26787366 -75085803 + L2 LINE L2 296 463 -2851 213 401 14 24 chr13 26787438 26787645 -75085524 + L2 LINE L2 542 746 -2568 1530 188 47 0 chr13 26787908 26788342 -75084827 + L1MC/D LINE L1 5132 5588 -743 308 252 154 8 chr13 26788528 26788777 -75084392 + L1ME LINE L1 1244 1526 -5004 914 191 144 30 chr13 26788789 26789025 -75084144 + MSTA LTR MaLR 1 263 -165 1232 134 51 24 chr13 26790112 26790365 -75082804 - L1MA4 LINE L1 -15 6285 6026 322 227 182 15 chr13 26790776 26790908 -75082261 - L1MD2 LINE L1 -14 6345 6192 5009 168 39 26 chr13 26790909 26792068 -75081101 + Ricksha_a DNA DNA 38 1176 -10 1254 191 78 58 chr13 26792075 26792489 -75080680 - L1MD3 LINE L1 -140 7855 5808 1574 203 75 17 chr13 26792824 26792960 -75080209 + MLT1A1 LTR MaLR 1 128 -237 2421 98 0 6 chr13 26792960 26793275 -75079894 + AluSq SINE Alu 1 313 0 1574 203 75 17 chr13 26793275 26793483 -75079686 + MLT1A1 LTR MaLR 128 365 0 25 0 0 0 chr13 26794142 26794167 -75079002 + AT_rich Low_complexity Low_complexity 1 25 0 373 274 17 63 chr13 26794437 26794612 -75078557 + L1ME LINE L1 2417 2583 -3957 386 282 135 71 chr13 26794614 26795050 -75078119 + L1ME LINE L1 141 604 -5601 509 238 65 6 chr13 26795336 26795504 -75077665 + L1ME LINE L1 2086 2263 -4133 518 132 0 0 chr13 26795515 26795591 -75077578 + AluS SINE Alu 221 296 -16 234 0 0 0 chr13 26795597 26795623 -75077546 + (TC)n Simple_repeat Simple_repeat 2 27 0 202 56 56 0 chr13 26795622 26795658 -75077511 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 1665 249 84 29 chr13 26795658 26796656 -75076513 + L1ME LINE L1 2234 3286 -2929 2017 246 59 49 chr13 26796660 26797738 -75075431 + L1ME LINE L1 3669 4757 -1458 2258 105 3 3 chr13 26797750 26798054 -75075115 + AluSx SINE Alu 5 308 -4 189 265 258 13 chr13 26798079 26798230 -75074939 - MER5A DNA MER1_type -1 188 1 523 266 89 128 chr13 26798293 26798538 -75074631 + L2 LINE L2 2536 2789 -524 678 85 0 0 chr13 26798538 26798632 -75074537 + L1MB5 LINE L1 6075 6168 -6 523 266 89 128 chr13 26798632 26799138 -75074031 + L2 LINE L2 2789 3275 -38 2175 124 7 0 chr13 26800121 26800427 -75072742 - AluSq SINE Alu -5 308 1 1540 187 34 24 chr13 26800427 26800721 -75072448 - AluJo SINE Alu -15 297 1 512 220 63 13 chr13 26801808 26801967 -75071202 - LTR33A LTR ERVL -13 510 344 901 139 63 67 chr13 26802664 26802820 -75070349 + L1MD2 LINE L1 6137 6293 -66 2005 92 4 26 chr13 26802820 26803093 -75070076 - AluSx SINE Alu -10 302 36 901 139 63 67 chr13 26803093 26803159 -75070010 + L1MD2 LINE L1 6293 6358 -1 180 0 0 0 chr13 26804108 26804128 -75069041 + (CAGGG)n Simple_repeat Simple_repeat 3 22 0 246 328 82 8 chr13 26804248 26804382 -75068787 + L2 LINE L2 2560 2703 -611 189 0 0 0 chr13 26804463 26804484 -75068685 + (A)n Simple_repeat Simple_repeat 1 21 0 457 224 105 28 chr13 26804510 26804653 -75068516 - LTR16C LTR ERVL -21 470 317 281 285 41 49 chr13 26804842 26804965 -75068204 + MER5B DNA MER1_type 57 178 0 240 319 18 62 chr13 26805117 26805154 -75068015 + L2 LINE L2 3163 3200 -72 2519 61 0 16 chr13 26805154 26805464 -75067705 + AluY SINE Alu 1 305 -6 240 319 18 62 chr13 26805464 26805539 -75067630 + L2 LINE L2 3200 3270 -2 198 205 0 0 chr13 26805657 26805696 -75067473 - L2 LINE L2 -12 3301 3263 256 246 0 43 chr13 26806554 26806623 -75066546 - L2 LINE L2 0 3272 3207 2014 106 10 3 chr13 26806799 26807091 -75066078 - AluSp SINE Alu -19 294 1 189 295 77 13 chr13 26808767 26808845 -75064324 + MIR3 SINE MIR 77 159 -49 34594 34 3 1 chr13 26811849 26817014 -75056155 + L1PA4 LINE L1 973 6147 -8 461 261 35 4 chr13 26817422 26817652 -75055517 - L1M4 LINE L1 -2094 4052 3816 513 314 81 50 chr13 26817801 26818183 -75054986 - L1M4 LINE L1 -2368 3778 3385 205 164 18 18 chr13 26818304 26818359 -75054810 + CT-rich Low_complexity Low_complexity 3 57 0 422 279 87 38 chr13 26818509 26818692 -75054477 - L1M4 LINE L1 -3223 2923 2732 290 211 94 35 chr13 26818707 26818878 -75054291 - L1M4 LINE L1 -727 5437 5256 342 138 0 0 chr13 26819002 26819060 -75054109 - L1M4 LINE L1 -931 5215 5158 499 232 74 26 chr13 26819135 26819325 -75053844 - L1M4 LINE L1 -1098 5048 4850 4176 149 13 4 chr13 26819334 26820039 -75053130 - MER50 LTR ERV1 -23 711 1 284 286 50 0 chr13 26820039 26820179 -75052990 - L1M4 LINE L1 -1301 4845 4699 2729 26 0 0 chr13 26820183 26820488 -75052681 - AluYa5 SINE Alu -6 305 1 579 121 10 10 chr13 26820488 26820587 -75052582 + MER45 DNA AcHobo 1480 1578 -3 226 374 35 17 chr13 26820589 26820704 -75052465 + L2 LINE L2 3188 3304 -9 337 315 47 16 chr13 26820736 26820863 -75052306 + L3 LINE CR1 1006 1136 -441 266 339 36 18 chr13 26820865 26820977 -75052192 + MIR SINE MIR 48 161 -101 200 316 151 19 chr13 26821115 26821321 -75051848 + L3 LINE CR1 1219 1451 -126 328 271 77 71 chr13 26821412 26821582 -75051587 - MIR SINE MIR -14 248 78 222 37 0 0 chr13 26822583 26822610 -75050559 + (CA)n Simple_repeat Simple_repeat 2 28 0 1928 149 0 7 chr13 26824495 26824790 -75048379 + AluJb SINE Alu 2 294 -18 207 0 0 0 chr13 26825092 26825115 -75048054 + (C)n Simple_repeat Simple_repeat 1 23 0 402 121 0 0 chr13 26825150 26825216 -75047953 + (C)n Simple_repeat Simple_repeat 1 66 0 284 235 0 0 chr13 26825393 26825461 -75047708 + MER92C LTR ERV1 483 550 -4 202 214 0 0 chr13 26825852 26825894 -75047275 + MIR SINE MIR 99 140 -122 2312 117 0 7 chr13 26825988 26826295 -75046874 - AluSx SINE Alu -7 305 1 324 0 0 0 chr13 26826497 26826533 -75046636 + (TG)n Simple_repeat Simple_repeat 1 36 0 1978 123 0 0 chr13 26826538 26826806 -75046363 - AluSx SINE Alu -30 282 15 222 283 0 0 chr13 26827855 26827908 -75045261 + CT-rich Low_complexity Low_complexity 3 55 0 369 214 69 23 chr13 26828402 26828533 -75044636 + MER103 DNA DNA 21 157 -9 432 311 8 8 chr13 26828808 26828927 -75044242 - MIR3 SINE MIR -36 172 54 356 85 0 0 chr13 26829634 26829681 -75043488 - U6 snRNA snRNA -60 47 1 201 263 18 0 chr13 26829888 26829945 -75043224 + L2 LINE L2 2182 2239 -1075 386 323 117 40 chr13 26830219 26830871 -75042298 + L2 LINE L2 2544 3271 -1 22 0 0 0 chr13 26832970 26832992 -75040177 + AT_rich Low_complexity Low_complexity 1 22 0 815 188 18 0 chr13 26833175 26833345 -75039824 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 26833347 26833467 -75039702 + FRAM SINE Alu 66 175 -1 671 234 138 17 chr13 26833470 26833660 -75039509 + MLT1B LTR MaLR 200 426 -41 437 0 0 19 chr13 26833660 26833714 -75039455 + (TTG)n Simple_repeat Simple_repeat 2 54 0 671 234 138 17 chr13 26833714 26833762 -75039407 + MLT1B LTR MaLR 426 467 0 181 262 95 36 chr13 26834321 26834405 -75038764 - MIR3 SINE MIR -5 203 115 2191 112 0 3 chr13 26834907 26835201 -75037968 + AluSx SINE Alu 1 293 -19 376 221 115 29 chr13 26838601 26838705 -75034464 - L2 LINE L2 -2 3311 3199 1870 141 0 7 chr13 26838740 26839023 -75034146 + AluJb SINE Alu 5 285 -27 47 19 0 0 chr13 26839023 26839077 -75034092 + AT_rich Low_complexity Low_complexity 1 54 0 1406 109 12 51 chr13 26839232 26839488 -75033681 + Tigger2a DNA MER2_type 1 246 -188 519 209 0 0 chr13 26839485 26839576 -75033593 + Tigger2a DNA MER2_type 354 444 0 * 734 276 132 0 chr13 26839581 26839824 -75033345 - L2 LINE L2 -338 2976 2702 483 202 57 8 chr13 26839824 26839948 -75033221 - L1MB8 LINE L1 0 6178 6049 1838 225 56 56 chr13 26839951 26840185 -75032984 - L1PA13 LINE L1 -2 6161 5928 2803 174 65 12 chr13 26840185 26840554 -75032615 - L1MB8 LINE L1 -250 5934 5586 2391 91 0 0 chr13 26840554 26840850 -75032319 - AluSg SINE Alu -11 299 4 2803 174 65 12 chr13 26840850 26841505 -75031664 - L1MB8 LINE L1 -598 5586 4858 1056 253 41 15 chr13 26841505 26841608 -75031561 - L2 LINE L2 -599 2715 2616 2240 156 55 103 chr13 26841608 26842154 -75031015 - MLT2B1 LTR ERVL 0 520 1 1056 253 41 15 chr13 26842154 26842319 -75030850 - L2 LINE L2 -698 2616 2440 1956 174 67 5 chr13 26843216 26843589 -75029580 - MSTD LTR MaLR 0 396 1 345 229 259 0 chr13 26844764 26844895 -75028274 + L1ME4a LINE L1 5831 5995 -126 431 274 18 58 chr13 26845017 26845133 -75028036 + L1MC4 LINE L1 5694 5798 -2010 2342 127 42 3 chr13 26845133 26845494 -75027675 + THE1C LTR MaLR 1 375 0 431 274 18 58 chr13 26845494 26845603 -75027566 + L1MC4 LINE L1 5798 5910 -1898 21 0 0 0 chr13 26845716 26845737 -75027432 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 26845813 26845834 -75027335 + AT_rich Low_complexity Low_complexity 1 21 0 291 137 20 0 chr13 26846683 26846738 -75026431 + L2 LINE L2 3217 3313 0 1885 216 45 2 chr13 26847291 26847763 -75025406 + Charlie4a DNA MER1_type 17 508 0 485 288 56 68 chr13 26847980 26848230 -75024939 + MIR SINE MIR 1 247 -15 952 260 41 4 chr13 26848336 26848582 -75024587 + MIR SINE MIR 8 262 0 275 366 101 26 chr13 26850379 26850647 -75022522 + L2 LINE L2 2684 2971 -343 3494 229 34 19 chr13 26850839 26852327 -75020842 - L1ME1 LINE L1 -5 6161 4644 2368 106 0 0 chr13 26852327 26852630 -75020539 - AluSx SINE Alu -9 303 1 3494 229 34 19 chr13 26852630 26852995 -75020174 - L1ME1 LINE L1 -1522 4644 4286 186 133 0 0 chr13 26853467 26853497 -75019672 + (TA)n Simple_repeat Simple_repeat 1 30 0 329 242 0 44 chr13 26853498 26853589 -75019580 + L1MC4 LINE L1 6614 6700 -1342 * 336 261 0 22 chr13 26853528 26853620 -75019549 - L1MC4 LINE L1 -1339 6703 6614 302 307 11 0 chr13 26853597 26853685 -75019484 + L1MC4 LINE L1 6615 6703 -1339 * 307 258 0 0 chr13 26853721 26853810 -75019359 + L1MC4 LINE L1 6616 6704 -1338 27 0 0 0 chr13 26853810 26853837 -75019332 + AT_rich Low_complexity Low_complexity 1 27 0 1459 124 0 0 chr13 26853837 26854031 -75019138 - AluSg/x SINE Alu -46 264 71 1586 163 50 0 chr13 26854061 26854319 -75018850 - AluJo SINE Alu -18 294 24 332 286 57 21 chr13 26855024 26855164 -75018005 - L1ME4a LINE L1 -12 6109 5965 1664 166 3 21 chr13 26855616 26855905 -75017264 + AluJb SINE Alu 1 284 -28 535 149 0 18 chr13 26855905 26856019 -75017150 + (GGGGA)n Simple_repeat Simple_repeat 1 112 0 203 265 181 12 chr13 26856069 26856152 -75017017 + L2 LINE L2 3125 3221 -51 433 127 42 127 chr13 26856346 26856464 -75016705 + FLAM_A SINE Alu 35 142 0 1211 231 75 14 chr13 26856639 26856999 -75016170 + MLT1H LTR MaLR 1 382 -167 2853 171 97 62 chr13 26857053 26857423 -75015746 + L1MD1 LINE L1 5410 5766 -476 2229 118 3 3 chr13 26857423 26857729 -75015440 + AluSx SINE Alu 1 306 -6 2853 171 97 62 chr13 26857729 26858161 -75015008 + L1MD1 LINE L1 5766 6240 -2 381 269 156 18 chr13 26858161 26858328 -75014841 + MIR SINE MIR 73 262 0 2121 115 7 7 chr13 26858564 26858869 -75014300 - AluSx SINE Alu -7 305 1 218 336 133 28 chr13 26858919 26859062 -75014107 - L3 LINE CR1 -3 1574 1417 499 274 0 9 chr13 26859319 26859425 -75013744 - L2 LINE L2 0 3272 3168 263 237 79 13 chr13 26860495 26860571 -75012598 - MIR SINE MIR -98 164 84 184 345 142 26 chr13 26862521 26862634 -75010535 - MIR3 SINE MIR -25 183 58 1311 191 9 10 chr13 26862640 26862963 -75010206 - MLT1A1 LTR MaLR -10 355 1 221 289 67 115 chr13 26864121 26864329 -75008840 - L3b LINE CR1 -93 1490 1293 202 323 75 21 chr13 26865404 26865497 -75007672 + MIR SINE MIR 19 116 -92 208 344 89 89 chr13 26865598 26865868 -75007301 + L2 LINE L2 3003 3272 0 1605 185 25 4 chr13 26868496 26868615 -75004554 + AluJo SINE Alu 1 116 -196 201 39 0 0 chr13 26868615 26868641 -75004528 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1605 185 25 4 chr13 26868641 26868797 -75004372 + AluJo SINE Alu 116 282 -30 213 253 80 27 chr13 26869242 26869317 -75003852 + MIR SINE MIR 52 130 -132 299 294 63 21 chr13 26870141 26870284 -75002885 + L1ME4a LINE L1 5607 5755 -2053 399 237 160 65 chr13 26870700 26870863 -75002306 + L1ME4a LINE L1 5788 5987 -134 333 0 0 0 chr13 26870863 26870900 -75002269 + (CA)n Simple_repeat Simple_repeat 2 38 0 399 237 160 65 chr13 26870900 26870998 -75002171 + L1ME4a LINE L1 5987 6074 -47 2064 59 3 69 chr13 26871945 26872235 -75000934 - AluY SINE Alu -16 295 25 800 194 18 0 chr13 26873926 26874096 -74999073 + MLT1B LTR MaLR 1 173 -217 526 158 0 83 chr13 26874098 26874218 -74998951 + FRAM SINE Alu 66 175 -1 666 243 115 12 chr13 26874221 26874412 -74998757 + MLT1B LTR MaLR 200 423 -44 377 20 0 20 chr13 26874412 26874463 -74998706 + (TTG)n Simple_repeat Simple_repeat 1 50 0 666 243 115 12 chr13 26874463 26874514 -74998655 + MLT1B LTR MaLR 423 467 0 974 175 7 0 chr13 26875441 26875595 -74997574 - AluSx SINE Alu -120 192 38 198 0 0 0 chr13 26876982 26877004 -74996165 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 249 348 22 0 chr13 26877006 26877098 -74996071 - L2 LINE L2 -8 3264 3171 3432 132 105 8 chr13 26877166 26877793 -74995376 + L1MA4A LINE L1 5609 6296 -7 201 229 25 147 chr13 26877842 26877999 -74995170 + MIR SINE MIR 92 229 -33 223 250 0 44 chr13 26878330 26878398 -74994771 + GA-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr13 26878589 26878610 -74994559 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 26879578 26879603 -74993566 + (TC)n Simple_repeat Simple_repeat 1 25 0 380 292 50 8 chr13 26879940 26880060 -74993109 - L3b LINE CR1 -124 1459 1335 2300 96 0 0 chr13 26880293 26880584 -74992585 + AluSx SINE Alu 1 291 -21 508 257 44 34 chr13 26880586 26880792 -74992377 + L1MC4a LINE L1 4999 5206 -940 3665 40 0 0 chr13 26880792 26881271 -74991898 - L1P LINE L1 -4424 1722 1244 396 73 0 0 chr13 26881276 26881331 -74991838 - L1P LINE L1 -5983 163 109 5328 42 6 1 chr13 26881331 26881990 -74991179 + L1PA4 LINE L1 5491 6152 -3 1380 273 57 29 chr13 26881997 26882683 -74990486 + L1MC4a LINE L1 5348 6052 -1756 1179 267 11 62 chr13 26883174 26883720 -74989449 + L1MC5 LINE L1 6625 7142 -819 213 179 71 18 chr13 26883720 26883776 -74989393 + MIR SINE MIR 121 179 -83 1768 152 27 75 chr13 26884025 26884180 -74988989 - L1M1 LINE L1 -4833 2732 2571 2030 149 0 3 chr13 26884180 26884476 -74988693 - AluSq SINE Alu -18 295 1 1768 152 27 75 chr13 26884476 26884801 -74988368 - L1M1 LINE L1 -4994 2571 2275 193 29 29 29 chr13 26884912 26884947 -74988222 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2151 102 14 0 chr13 26885017 26885310 -74987859 - AluSx SINE Alu -15 297 1 2007 130 7 0 chr13 26886095 26886387 -74986782 - AluSx SINE Alu -18 294 1 26 0 0 0 chr13 26886395 26886421 -74986748 + AT_rich Low_complexity Low_complexity 1 26 0 742 232 48 0 chr13 26886459 26886627 -74986542 - MER5B DNA MER1_type -1 177 2 4682 114 38 23 chr13 26886975 26887771 -74985398 - L1MA5 LINE L1 -2 6298 5491 1772 108 148 75 chr13 26888052 26888409 -74984760 + MSTA LTR MaLR 1 391 -37 2341 90 0 3 chr13 26888409 26888708 -74984461 - AluSc SINE Alu -11 298 1 1772 108 148 75 chr13 26888708 26888749 -74984420 + MSTA LTR MaLR 391 428 0 242 330 70 10 chr13 26888806 26888906 -74984263 - L2 LINE L2 -49 3264 3159 415 182 0 20 chr13 26889395 26889494 -74983675 + (TA)n Simple_repeat Simple_repeat 2 98 0 638 324 180 9 chr13 26889711 26890260 -74982909 - L2 LINE L2 -400 2914 2272 2235 49 3 11 chr13 26890364 26890687 -74982482 + AluY SINE Alu 1 321 0 1363 138 21 0 chr13 26892818 26893057 -74980112 + L1MA5A LINE L1 6054 6297 0 318 342 92 11 chr13 26893830 26894014 -74979155 + MIR SINE MIR 33 231 -31 447 364 145 27 chr13 26894474 26895490 -74977679 + L2 LINE L2 2143 3272 0 681 242 26 84 chr13 26896056 26896105 -74977064 + MER58A DNA MER1_type 1 51 -2369 618 188 31 8 chr13 26896105 26896233 -74976936 - FLAM_A SINE Alu -2 131 1 681 242 26 84 chr13 26896233 26896410 -74976759 + MER58A DNA MER1_type 51 214 -10 282 237 26 13 chr13 26896849 26896925 -74976244 + GA-rich Low_complexity Low_complexity 2 78 0 3959 160 24 20 chr13 26898743 26899493 -74973676 - L1MB2 LINE L1 -8 6163 5411 453 150 0 0 chr13 26899493 26899573 -74973596 - L1MB2 LINE L1 -1611 4535 4456 236 323 106 43 chr13 26899977 26900212 -74972957 - L2 LINE L2 -815 2499 2250 22 35 0 0 chr13 26900412 26900441 -74972728 + AT_rich Low_complexity Low_complexity 1 29 0 5676 127 13 14 chr13 26900441 26902200 -74970969 - L1PA15 LINE L1 0 6165 4400 380 258 88 61 chr13 26902800 26902865 -74970304 + MER20B DNA MER1_type 5 67 -152 180 77 0 0 chr13 26902865 26902891 -74970278 + (TTGG)n Simple_repeat Simple_repeat 3 28 0 380 258 88 61 chr13 26902891 26903015 -74970154 + MER20B DNA MER1_type 67 219 0 3408 165 27 2 chr13 26904021 26904610 -74968559 + MER6A DNA MER2_type 1 604 -1 213 167 0 0 chr13 26904610 26904646 -74968523 + (TA)n Simple_repeat Simple_repeat 2 37 0 577 118 42 0 chr13 26907363 26907482 -74965687 + (CCTCG)n Simple_repeat Simple_repeat 4 127 0 343 314 151 57 chr13 26907585 26908043 -74965126 - L1M2 LINE L1 -5584 1265 765 473 84 127 0 chr13 26908924 26908995 -74964174 - MADE1 DNA Mariner 0 80 1 352 242 88 144 chr13 26909252 26909446 -74963723 + MER5B DNA MER1_type 1 183 -6 320 187 0 0 chr13 26909738 26909813 -74963356 + L1MB7 LINE L1 6110 6184 0 2209 81 18 0 chr13 26910091 26910374 -74962795 - AluSx SINE Alu -16 296 9 520 238 131 60 chr13 26910975 26911257 -74961912 - MLT1D LTR MaLR -2 465 164 2063 188 183 2 chr13 26911263 26911732 -74961437 - MER89 LTR ERV1 0 559 6 583 211 45 64 chr13 26911733 26911889 -74961280 - MLT1D LTR MaLR -352 153 1 212 339 65 0 chr13 26912755 26912817 -74960352 - L2 LINE L2 -64 3208 3143 769 304 40 8 chr13 26912840 26913090 -74960079 - MIR SINE MIR 0 262 5 284 259 326 0 chr13 26913319 26913466 -74959703 - L2 LINE L2 -97 3216 3022 * 364 304 27 9 chr13 26913450 26913562 -74959607 - L2 LINE L2 -730 2584 2471 3658 284 202 25 chr13 26913735 26915808 -74957361 - L2 LINE L2 -853 2461 22 1053 212 4 37 chr13 26916054 26916299 -74956870 - MER8 DNA MER2_type -1 238 2 711 266 100 22 chr13 26916372 26916601 -74956568 + MIR SINE MIR 1 247 -15 190 208 42 0 chr13 26916892 26916940 -74956229 - L2 LINE L2 -219 3053 3004 251 341 0 0 chr13 26917324 26917409 -74955760 - MER117 DNA MER1_type -49 148 64 483 305 155 13 chr13 26917425 26917651 -74955518 - MIR SINE MIR 0 262 5 21 0 0 0 chr13 26918362 26918383 -74954786 + AT_rich Low_complexity Low_complexity 1 21 0 494 322 121 0 chr13 26919068 26919242 -74953927 + MIR SINE MIR 3 197 -65 220 262 254 32 chr13 26919526 26919652 -74953517 - L2 LINE L2 -22 3291 3138 21 0 0 0 chr13 26920011 26920032 -74953137 + AT_rich Low_complexity Low_complexity 1 21 0 3082 246 22 1 chr13 26920042 26920848 -74952321 + L1ME LINE L1 3905 4727 -1419 242 310 35 11 chr13 26920848 26920935 -74952234 - MER21B LTR ERV1 -79 784 696 3123 184 12 0 chr13 26920935 26921446 -74951723 + Tigger7 DNA MER2_type 1 517 -216 1064 97 28 0 chr13 26921448 26921593 -74951576 + AluSq/x SINE Alu 1 149 -164 1550 106 65 12 chr13 26921593 26921839 -74951330 + Tigger7 DNA MER2_type 2229 2487 0 2190 209 88 81 chr13 26921839 26922463 -74950706 - MER21B LTR ERV1 -166 697 66 2435 145 33 9 chr13 26922463 26922883 -74950286 + MSTB1 LTR MaLR 3 432 0 2190 209 88 81 chr13 26922883 26922950 -74950219 - MER21B LTR ERV1 -797 66 1 1477 208 110 25 chr13 26922951 26923389 -74949780 + L1ME LINE L1 4724 5198 -948 306 50 0 0 chr13 26923495 26923535 -74949634 + (CA)n Simple_repeat Simple_repeat 1 40 0 1020 232 102 34 chr13 26923535 26924204 -74948965 + L1MB7 LINE L1 5454 6184 0 309 275 12 0 chr13 26924210 26924290 -74948879 + GA-rich Low_complexity Low_complexity 3 83 0 1183 332 109 20 chr13 26924517 26925475 -74947694 - L2 LINE L2 0 3313 2286 379 264 95 125 chr13 26925796 26926164 -74947005 + MLT1H LTR MaLR 23 379 -170 307 375 148 8 chr13 26926398 26926654 -74946515 - L2 LINE L2 -1076 2238 1947 220 344 15 53 chr13 26926665 26926796 -74946373 - MIR SINE MIR -63 145 20 22 35 0 0 chr13 26926840 26926869 -74946300 + AT_rich Low_complexity Low_complexity 1 29 0 22 43 0 21 chr13 26929271 26929292 -74943877 + AT_rich Low_complexity Low_complexity 1 21 -25 2294 104 0 0 chr13 26929292 26929590 -74943579 - AluSx SINE Alu -14 298 1 22 43 0 21 chr13 26929590 26929615 -74943554 + AT_rich Low_complexity Low_complexity 21 46 0 294 95 0 0 chr13 26929719 26929761 -74943408 + (CA)n Simple_repeat Simple_repeat 2 43 0 341 310 143 16 chr13 26929989 26930234 -74942935 + L1ME LINE L1 5304 5579 -587 488 259 89 35 chr13 26930248 26930453 -74942716 - L1ME3 LINE L1 0 6334 5961 292 125 0 0 chr13 26930454 26930502 -74942667 - L1MB8 LINE L1 -6 6172 6125 2526 75 0 0 chr13 26930555 26930862 -74942307 - AluY SINE Alu -4 307 1 4722 84 58 36 chr13 26930866 26931619 -74941550 - L1PA13 LINE L1 -8 6155 5386 * 17104 182 17 11 chr13 26931618 26931816 -74941353 - L1PA13 LINE L1 -1537 5260 5065 279 0 0 0 chr13 26931816 26931847 -74941322 + (TG)n Simple_repeat Simple_repeat 1 31 0 17104 182 17 11 chr13 26931847 26935787 -74937382 - L1PA13 LINE L1 -1732 5065 1079 328 258 42 8 chr13 26935785 26935905 -74937264 - L1MB8 LINE L1 -40 6138 6015 * 4020 222 67 74 chr13 26935924 26937857 -74935312 - L1MDa LINE L1 -4443 2097 23 1938 171 0 0 chr13 26939137 26939436 -74933733 + AluJb SINE Alu 3 301 -11 276 292 12 47 chr13 26939653 26939747 -74933422 - MIR SINE MIR -83 125 34 433 330 153 11 chr13 26939953 26940235 -74932934 - L1MC4a LINE L1 -237 5933 5612 225 178 44 0 chr13 26940732 26940777 -74932392 + L1ME LINE L1 851 897 -5475 2348 95 3 0 chr13 26940836 26941141 -74932028 + AluSq SINE Alu 1 306 -7 1851 85 4 0 chr13 26941422 26941658 -74931511 + AluSq SINE Alu 70 306 -7 319 205 33 120 chr13 26941926 26941990 -74931179 + L1ME LINE L1 1673 1741 -4768 183 42 0 0 chr13 26941990 26942014 -74931155 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1731 171 7 4 chr13 26942016 26942297 -74930872 - AluSx SINE Alu -30 282 1 319 205 33 120 chr13 26942297 26942369 -74930800 + L1ME LINE L1 1742 1923 -4586 7482 229 59 45 chr13 26942481 26945719 -74927450 + L1ME LINE L1 2138 5395 -1005 1703 166 15 0 chr13 26945719 26945990 -74927179 + AluJo SINE Alu 1 275 -37 7482 229 59 45 chr13 26945990 26946623 -74926546 + L1ME LINE L1 5395 6018 -382 408 74 0 0 chr13 26946624 26946678 -74926491 - L1P LINE L1 -5984 162 109 5445 37 1 8 chr13 26946678 26947346 -74925823 + L1PA4 LINE L1 5491 6154 -1 274 100 0 0 chr13 26947349 26947389 -74925780 + L1ME LINE L1 6005 6044 -354 3226 163 34 42 chr13 26947465 26947502 -74925667 + L1MB8 LINE L1 5431 5467 -711 2907 107 16 5 chr13 26947502 26947931 -74925238 + MER57B LTR ERV1 1 434 0 3226 163 34 42 chr13 26947931 26948543 -74924626 + L1MB8 LINE L1 5467 6075 -103 265 276 22 104 chr13 26948548 26948682 -74924487 + LTR35 LTR ERV1 1 123 -495 617 243 94 58 chr13 26948796 26949133 -74924036 + LTR35 LTR ERV1 350 617 -1 561 139 20 0 chr13 26949145 26949246 -74923923 + L1MB7 LINE L1 6082 6184 0 228 103 0 0 chr13 26949468 26949507 -74923662 - MER57A LTR ERV1 0 403 365 775 236 158 42 chr13 26949539 26949899 -74923270 - MER57B LTR ERV1 -23 411 10 614 276 66 17 chr13 26949960 26950141 -74923028 + MIR SINE MIR 59 248 -14 2818 13 0 0 chr13 26950848 26951157 -74922012 - AluYb8 SINE Alu -9 309 1 7452 29 0 0 chr13 26952256 26953615 -74919554 - L1PA4 LINE L1 -4 6151 4786 575 287 63 36 chr13 26954754 26954977 -74918192 - MIR SINE MIR 0 262 34 24 32 0 0 chr13 26955020 26955051 -74918118 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 26955425 26955456 -74917713 + AT_rich Low_complexity Low_complexity 1 31 0 515 267 53 13 chr13 26957201 26957351 -74915818 + LTR16A1 LTR ERVL 299 454 -3 2260 100 0 0 chr13 26957544 26957834 -74915335 + AluSx SINE Alu 1 290 -22 2283 114 0 0 chr13 26958114 26958420 -74914749 + AluSx SINE Alu 1 306 -6 342 0 0 0 chr13 26959120 26959158 -74914011 + (TG)n Simple_repeat Simple_repeat 2 39 0 306 293 47 9 chr13 26959349 26959455 -74913714 + L2 LINE L2 3204 3313 0 254 296 59 53 chr13 26959722 26959874 -74913295 + L2 LINE L2 2892 3044 -228 1152 192 12 41 chr13 26959928 26960173 -74912996 + MER8 DNA MER2_type 2 239 0 1057 157 60 23 chr13 26961775 26961924 -74911245 - L1PA16 LINE L1 -14 6152 5991 2271 119 0 0 chr13 26961924 26962226 -74910943 - AluSx SINE Alu -10 302 1 1057 157 60 23 chr13 26962226 26962292 -74910877 - L1PA16 LINE L1 -175 5991 5929 4866 135 29 4 chr13 26962294 26963347 -74909822 - L1PA16 LINE L1 -138 6028 4950 540 336 37 8 chr13 26963355 26963599 -74909570 - L3 LINE CR1 -396 1181 931 15164 155 45 19 chr13 26963696 26966189 -74906980 + L1M1 LINE L1 15 2583 -4982 2068 146 0 0 chr13 26966189 26966484 -74906685 + AluSq SINE Alu 1 295 -18 15164 155 45 19 chr13 26966484 26966639 -74906530 + L1M1 LINE L1 2583 2732 -4833 215 179 71 18 chr13 26966888 26966944 -74906225 - MIR SINE MIR -83 179 121 1329 266 17 62 chr13 26966944 26967535 -74905634 - L1MC5 LINE L1 -819 7142 6575 1564 273 57 29 chr13 26967981 26968667 -74904502 - L1MC4a LINE L1 -1756 6052 5348 5438 36 5 1 chr13 26968674 26969334 -74903835 - L1PA4 LINE L1 -3 6152 5491 416 73 0 0 chr13 26969334 26969389 -74903780 + L1P LINE L1 109 163 -5983 3833 40 0 0 chr13 26969394 26969873 -74903296 + L1P LINE L1 1244 1722 -4424 1412 236 27 50 chr13 26969873 26970081 -74903088 - L1 LINE L1 -940 5206 4995 2259 110 0 0 chr13 26970081 26970372 -74902797 - AluSx SINE Alu -21 291 1 1412 236 27 50 chr13 26970372 26970604 -74902565 - L1 LINE L1 -1151 4995 4776 308 283 43 11 chr13 26970631 26970818 -74902351 - L1MC4a LINE L1 -915 5231 5039 633 300 70 0 chr13 26971161 26971361 -74901808 + MIR SINE MIR 49 262 0 371 288 79 58 chr13 26971350 26971489 -74901680 - MIR SINE MIR -101 161 20 * 21 0 0 0 chr13 26971579 26971600 -74901569 + AT_rich Low_complexity Low_complexity 1 21 0 2114 121 0 0 chr13 26971611 26971925 -74901244 - AluSx SINE Alu 0 314 1 242 217 14 0 chr13 26973508 26973577 -74899592 + CT-rich Low_complexity Low_complexity 3 72 0 206 214 24 0 chr13 26973800 26973842 -74899327 - L2 LINE L2 -16 3297 3255 21 0 0 0 chr13 26974629 26974650 -74898519 + AT_rich Low_complexity Low_complexity 1 21 0 245 297 16 0 chr13 26975096 26975160 -74898009 - L2 LINE L2 -75 3197 3133 21 0 0 0 chr13 26975175 26975196 -74897973 + AT_rich Low_complexity Low_complexity 1 21 0 2103 116 0 0 chr13 26976849 26977157 -74896012 + AluSx SINE Alu 1 308 0 2687 33 0 0 chr13 26977476 26977782 -74895387 + AluY SINE Alu 1 306 -5 360 319 85 21 chr13 26979472 26979613 -74893556 + MER5B DNA MER1_type 6 155 -23 279 260 170 20 chr13 26980020 26980120 -74893049 - L2 LINE L2 -12 3260 3146 2066 112 0 34 chr13 26980697 26981018 -74892151 + AluSx SINE Alu 1 311 0 2861 3 0 3 chr13 26981196 26981531 -74891638 + AluYa5 SINE Alu 1 334 0 239 288 14 0 chr13 26981773 26981846 -74891323 + MER5B DNA MER1_type 86 159 -19 303 80 140 0 chr13 26982015 26982065 -74891104 + L1PA8 LINE L1 5940 5996 -158 1205 79 0 6 chr13 26982165 26982330 -74890839 + L1PA8 LINE L1 6008 6171 -1 336 328 0 8 chr13 26982344 26982463 -74890706 - MER5A DNA MER1_type -56 133 16 504 291 107 22 chr13 26983625 26983854 -74889315 + MIR SINE MIR 2 250 -12 1381 173 103 11 chr13 26983868 26984139 -74889030 - AluJb SINE Alu -12 300 5 456 287 7 22 chr13 26985336 26985472 -74887697 + MIR SINE MIR 20 153 -109 21 36 0 0 chr13 26985882 26985910 -74887259 + AT_rich Low_complexity Low_complexity 1 28 0 1681 159 4 0 chr13 26985910 26986162 -74887007 - AluSx SINE Alu -22 290 38 198 0 0 0 chr13 26987549 26987571 -74885598 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 249 348 22 0 chr13 26987573 26987665 -74885504 - L2 LINE L2 -8 3264 3171 3466 132 105 8 chr13 26987733 26988360 -74884809 + L1MA4A LINE L1 5609 6296 -7 203 229 25 147 chr13 26988409 26988566 -74884603 + MIR SINE MIR 92 229 -33 239 235 0 44 chr13 26988897 26988965 -74884204 + GA-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr13 26989156 26989177 -74883992 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 26990145 26990170 -74882999 + (TC)n Simple_repeat Simple_repeat 1 25 0 384 292 50 8 chr13 26990507 26990627 -74882542 - L3b LINE CR1 -124 1459 1335 2269 92 0 0 chr13 26990860 26991185 -74881984 + AluSx SINE Alu 1 325 0 384 235 168 13 chr13 26991705 26991854 -74881315 - MIR SINE MIR -51 211 40 2837 10 0 0 chr13 26993471 26993781 -74879388 + AluYb8 SINE Alu 1 310 -8 2291 86 7 7 chr13 26993924 26994226 -74878943 - AluSx SINE Alu -10 302 1 2096 130 3 3 chr13 26994337 26994638 -74878531 - AluSq SINE Alu -12 301 1 403 297 60 22 chr13 26995219 26995404 -74877765 - MIR SINE MIR -64 198 7 191 345 9 43 chr13 26996202 26996318 -74876851 + L2 LINE L2 3190 3301 -12 432 0 0 0 chr13 26997150 26997198 -74875971 + (T)n Simple_repeat Simple_repeat 1 48 0 2153 204 91 12 chr13 26997811 26998380 -74874789 - LTR48B LTR ERV1 -30 614 1 1619 114 24 108 chr13 26998988 26999322 -74873847 + AluYb8 SINE Alu 1 306 -12 279 266 85 32 chr13 26999680 26999774 -74873395 - L2 LINE L2 -2 3270 3172 317 287 99 61 chr13 27000364 27000545 -74872624 - L1M2 LINE L1 -5894 955 768 245 279 0 0 chr13 27000782 27000843 -74872326 + (CG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr13 27001063 27001085 -74872084 + GC_rich Low_complexity Low_complexity 1 22 0 2093 102 0 16 chr13 27001452 27001765 -74871404 - AluY SINE Alu -3 308 1 653 291 100 28 chr13 27001950 27002552 -74870617 + L1MC5 LINE L1 7260 7904 -57 21 0 0 0 chr13 27002564 27002585 -74870584 + AT_rich Low_complexity Low_complexity 1 21 0 1517 253 105 11 chr13 27002953 27003695 -74869474 - L1M4 LINE L1 -2887 3259 2448 976 236 8 37 chr13 27004622 27004863 -74868306 - MER8 DNA MER2_type -4 235 2 183 240 96 48 chr13 27004938 27005042 -74868127 - L2 LINE L2 -249 3023 2915 267 366 144 16 chr13 27006961 27007218 -74865951 - L2 LINE L2 -1078 2236 1947 215 322 7 59 chr13 27007192 27007360 -74865809 - MIR SINE MIR -63 145 20 * 22 35 0 0 chr13 27007405 27007434 -74865735 + AT_rich Low_complexity Low_complexity 1 29 0 2281 118 0 0 chr13 27008796 27009102 -74864067 - AluSx SINE Alu -6 306 1 2003 126 0 0 chr13 27009382 27009667 -74863502 - AluSx SINE Alu -22 290 6 2566 165 34 38 chr13 27009767 27010324 -74862845 + L1MB8 LINE L1 5521 6075 -103 261 323 0 0 chr13 27010577 27010670 -74862499 + LTR58 LTR ERV1 350 442 -237 419 279 41 14 chr13 27010767 27010914 -74862255 + LTR35 LTR ERV1 467 617 -1 465 136 34 11 chr13 27010926 27011014 -74862155 + L1MB8 LINE L1 6080 6169 -9 2369 188 38 13 chr13 27011132 27011663 -74861506 + L1MC3 LINE L1 7221 7764 -21 660 311 55 60 chr13 27012622 27013259 -74859910 - HAL1 LINE L1 -1871 636 3 661 248 7 0 chr13 27013516 27013661 -74859508 + FRAM SINE Alu 1 145 -31 4028 250 8 10 chr13 27013797 27014967 -74858202 + L1P LINE L1 1264 2430 -3716 269 67 22 22 chr13 27016784 27016829 -74856340 - L1PA7 LINE L1 -617 5537 5493 4150 79 3 18 chr13 27016829 27017426 -74855743 + L1PA7 LINE L1 5567 6154 0 1852 126 0 27 chr13 27017721 27018014 -74855155 + AluY SINE Alu 16 300 -11 2518 64 0 0 chr13 27018433 27018744 -74854425 - AluY SINE Alu 0 311 1 875 272 96 32 chr13 27018929 27019555 -74853614 + L1MC5 LINE L1 7260 7925 -36 1124 170 5 16 chr13 27019736 27019930 -74853239 + AluJo SINE Alu 87 278 -34 313 331 134 52 chr13 27020256 27020504 -74852665 + L3 LINE CR1 1095 1372 -205 1496 225 85 40 chr13 27020504 27020949 -74852220 + LTR40c LTR ERVL 1 465 0 313 331 134 52 chr13 27020949 27020990 -74852179 + L3 LINE CR1 1372 1408 -169 387 193 145 0 chr13 27021365 27021448 -74851721 - L1MC3 LINE L1 -477 7308 7214 4241 174 61 13 chr13 27022808 27023741 -74849428 - L1MC3 LINE L1 -21 7764 6787 31 44 0 0 chr13 27024363 27024408 -74848761 + AT_rich Low_complexity Low_complexity 1 45 0 404 335 101 33 chr13 27025575 27026031 -74847138 - L2 LINE L2 -457 2857 2371 231 36 0 0 chr13 27026031 27026059 -74847110 + (TGG)n Simple_repeat Simple_repeat 2 29 0 2086 41 8 19 chr13 27026778 27027045 -74846124 - AluY SINE Alu -8 303 40 215 238 36 36 chr13 27028039 27028123 -74845046 - MIR3 SINE MIR 0 208 125 855 196 63 74 chr13 27028872 27029143 -74844026 - L2 LINE L2 -4 3309 3042 * 1251 278 97 43 chr13 27029133 27029755 -74843414 - L2 LINE L2 -1050 2264 1610 367 319 9 9 chr13 27030475 27030588 -74842581 - MIR3 SINE MIR -35 173 61 23 0 0 0 chr13 27030591 27030614 -74842555 + AT_rich Low_complexity Low_complexity 1 23 0 389 267 19 0 chr13 27030618 27030723 -74842446 - MIR SINE MIR -3 259 153 751 181 87 0 chr13 27030905 27031043 -74842126 + MER5A DNA MER1_type 35 184 -5 1871 310 95 55 chr13 27031067 27031954 -74841215 + ERVL LTR ERVL 2256 3219 -2545 2209 62 66 3 chr13 27031954 27032242 -74840927 - AluY SINE Alu -5 306 1 1871 310 95 55 chr13 27032242 27032727 -74840442 + ERVL LTR ERVL 3219 3683 -2081 301 289 90 45 chr13 27033149 27033448 -74839721 - MLT1H LTR MaLR -200 349 1 326 341 98 0 chr13 27033544 27033667 -74839502 - L2 LINE L2 -8 3305 3171 334 294 128 0 chr13 27033698 27033807 -74839362 - MIR SINE MIR -87 175 53 194 303 45 84 chr13 27034491 27034646 -74838523 - MIR SINE MIR -77 185 37 644 266 36 39 chr13 27037001 27037220 -74835949 - MIR SINE MIR -46 216 2 1315 179 29 7 chr13 27037264 27037537 -74835632 + L1MB8 LINE L1 5891 6169 -9 253 359 54 74 chr13 27037552 27037903 -74835266 - L2 LINE L2 -101 3171 2828 1860 166 3 7 chr13 27038004 27038312 -74834857 - AluJo SINE Alu -5 307 1 2200 119 0 0 chr13 27039061 27039356 -74833813 - AluSx SINE Alu -17 295 1 35 71 0 0 chr13 27039735 27039805 -74833364 + AT_rich Low_complexity Low_complexity 1 70 0 257 350 0 16 chr13 27039969 27040092 -74833077 + CT-rich Low_complexity Low_complexity 5 125 0 204 40 0 0 chr13 27040346 27040371 -74832798 + (T)n Simple_repeat Simple_repeat 1 25 0 2340 162 29 10 chr13 27040654 27041068 -74832101 - MSTB LTR MaLR -4 422 1 2107 115 3 0 chr13 27041485 27041772 -74831397 + AluSp SINE Alu 1 288 -25 186 43 0 0 chr13 27041772 27041795 -74831374 + (TA)n Simple_repeat Simple_repeat 1 23 0 2276 114 3 0 chr13 27042248 27042555 -74830614 + AluSx SINE Alu 1 308 -4 2738 96 48 32 chr13 27042624 27042668 -74830501 - MLT2A1 LTR ERVL 0 444 402 2090 138 0 19 chr13 27042668 27042986 -74830183 + AluSx SINE Alu 1 312 0 2738 96 48 32 chr13 27042986 27043009 -74830160 - MLT2A1 LTR ERVL -42 402 381 315 0 0 0 chr13 27043009 27043044 -74830125 + (TA)n Simple_repeat Simple_repeat 1 35 0 2738 96 48 32 chr13 27043044 27043412 -74829757 - MLT2A1 LTR ERVL -63 381 1 2680 77 51 134 chr13 27043877 27044330 -74828839 + MLT2A2 LTR ERVL 1 411 -42 504 0 0 0 chr13 27044330 27044386 -74828783 + (TA)n Simple_repeat Simple_repeat 2 57 0 2680 77 51 134 chr13 27044386 27044424 -74828745 + MLT2A2 LTR ERVL 411 451 -2 359 181 0 14 chr13 27044750 27044822 -74828347 + L1MEd LINE L1 1181 1251 -4868 1246 227 61 76 chr13 27044958 27044993 -74828176 - L1M4 LINE L1 -2648 3498 3464 1485 148 9 4 chr13 27044993 27045222 -74827947 + AluJb SINE Alu 74 303 -9 1246 227 61 76 chr13 27045222 27045742 -74827427 - L1M4 LINE L1 -2682 3464 2951 1301 174 13 4 chr13 27045742 27045989 -74827180 + MER57A LTR ERV1 1 278 -156 775 135 53 2 chr13 27045955 27046137 -74827032 - L1M4 LINE L1 -3197 2949 2757 * 2498 179 18 53 chr13 27046138 27046613 -74826556 + MLT1C LTR MaLR 4 467 0 2082 231 26 25 chr13 27046613 27046660 -74826509 - L1M4 LINE L1 -3428 2718 2673 2437 145 79 13 chr13 27046660 27047052 -74826117 - MER47B DNA MER2_type 0 418 1 2082 231 26 25 chr13 27047052 27047607 -74825562 - L1M4 LINE L1 -3473 2673 2115 895 125 0 22 chr13 27047616 27047752 -74825417 + AluJo SINE Alu 2 134 -178 2114 145 10 3 chr13 27047872 27048182 -74824987 - AluSx SINE Alu 0 312 1 521 180 9 9 chr13 27048253 27048364 -74824805 - MER69 DNA AcHobo -416 2110 2000 * 1812 244 127 10 chr13 27048352 27048856 -74824313 - MER69 DNA AcHobo -1958 568 6 561 314 115 66 chr13 27049065 27049821 -74823348 + L2 LINE L2 2153 2945 -369 436 344 89 37 chr13 27049841 27050269 -74822900 + L2 LINE L2 2509 2958 -356 21 57 0 0 chr13 27050368 27050403 -74822766 + AT_rich Low_complexity Low_complexity 1 35 0 319 299 74 65 chr13 27050567 27050798 -74822371 + L3 LINE CR1 1333 1565 -12 273 29 0 0 chr13 27050940 27050974 -74822195 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 180 284 105 32 chr13 27051875 27051970 -74821199 + MER5A DNA MER1_type 40 141 -48 702 39 29 0 chr13 27052583 27052685 -74820484 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 201 39 0 0 chr13 27052687 27052713 -74820456 + (TCTCTG)n Simple_repeat Simple_repeat 2 27 0 312 321 12 75 chr13 27052759 27052999 -74820170 + MARNA DNA Mariner 348 572 -14 208 246 0 0 chr13 27055992 27056049 -74817120 + (TA)n Simple_repeat Simple_repeat 2 58 0 1069 81 0 32 chr13 27056735 27056920 -74816249 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 201 74 0 0 chr13 27056927 27056954 -74816215 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 202 235 20 0 chr13 27057054 27057105 -74816064 + GA-rich Low_complexity Low_complexity 4 55 0 193 146 18 127 chr13 27057208 27057263 -74815906 - L2 LINE L2 0 3313 3265 1273 270 106 23 chr13 27057386 27057473 -74815696 + LTR16A LTR ERVL 22 100 -350 2493 195 122 4 chr13 27057473 27057894 -74815275 + MLT2B2 LTR ERVL 1 482 -33 288 53 0 0 chr13 27057894 27057932 -74815237 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 2493 195 122 4 chr13 27057932 27057971 -74815198 + MLT2B2 LTR ERVL 482 515 0 1273 270 106 23 chr13 27057971 27058279 -74814890 + LTR16A LTR ERVL 100 450 0 1853 328 53 27 chr13 27058421 27059457 -74813712 + HERVL LTR ERVL 4225 5287 -367 992 243 65 11 chr13 27059738 27060014 -74813155 + LTR16A LTR ERVL 160 450 0 576 323 194 27 chr13 27060014 27060671 -74812498 - L2 LINE L2 -181 3132 2364 232 258 65 0 chr13 27060883 27060945 -74812224 - MER5A DNA MER1_type -113 76 11 426 287 79 24 chr13 27060977 27061141 -74812028 + MIR SINE MIR 36 208 -54 339 340 54 15 chr13 27062996 27063199 -74809970 + MIR SINE MIR 49 259 -3 2006 125 0 17 chr13 27063494 27063783 -74809386 - AluSx SINE Alu -28 284 1 3832 154 36 39 chr13 27063999 27064120 -74809049 + L1MC2 LINE L1 5593 5713 -631 922 237 90 88 chr13 27064120 27064656 -74808513 + MER34 LTR ERV1 5 541 -1 3832 154 36 39 chr13 27064656 27065279 -74807890 + L1MC2 LINE L1 5713 6335 -9 224 260 0 0 chr13 27065465 27065515 -74807654 + T-rich Low_complexity Low_complexity 1 50 0 3125 240 47 13 chr13 27065900 27066918 -74806251 - L1ME3 LINE L1 0 6162 5107 412 288 192 0 chr13 27066983 27067223 -74805946 - L1ME3 LINE L1 -1227 4919 4634 4308 261 104 61 chr13 27067283 27067606 -74805563 - HAL1 LINE L1 -5 2502 2194 2330 112 3 0 chr13 27067606 27067918 -74805251 - AluSq SINE Alu 0 313 1 4308 261 104 61 chr13 27067918 27068199 -74804970 - HAL1 LINE L1 -313 2194 1927 1811 177 18 81 chr13 27068199 27068584 -74804585 - MLT1A1 LTR MaLR -4 361 1 4308 261 104 61 chr13 27068584 27070375 -74802794 - HAL1 LINE L1 -580 1927 3 955 184 0 0 chr13 27070632 27070784 -74802385 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 27070930 27070954 -74802215 + AT_rich Low_complexity Low_complexity 1 24 0 2201 86 0 24 chr13 27072452 27072743 -74800426 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 27073023 27073038 -74800131 + L1P3 LINE L1 5477 5491 -671 4942 57 2 12 chr13 27073038 27073633 -74799536 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 27073633 27073729 -74799440 + L1PA7 LINE L1 5491 5581 -581 2324 105 0 0 chr13 27073733 27074037 -74799132 + AluY SINE Alu 1 304 -7 283 267 188 0 chr13 27074180 27074281 -74798888 - L2 LINE L2 -12 3301 3182 1530 230 34 27 chr13 27074683 27075092 -74798077 - LTR52 LTR ERVL -9 412 1 225 0 0 0 chr13 27075451 27075476 -74797693 + (T)n Simple_repeat Simple_repeat 1 25 0 223 360 86 14 chr13 27075519 27075658 -74797511 - MER5A DNA MER1_type -6 183 35 355 262 121 13 chr13 27075916 27076065 -74797104 - MIR SINE MIR -50 212 48 1979 79 64 4 chr13 27076082 27076383 -74796786 - AluY SINE Alu 0 317 1 557 354 34 20 chr13 27076704 27076998 -74796171 - L2 LINE L2 -398 2916 2619 1966 215 8 11 chr13 27077063 27077426 -74795743 + MLT1A1 LTR MaLR 4 365 0 35 24 0 0 chr13 27077609 27077651 -74795518 + AT_rich Low_complexity Low_complexity 1 42 0 2115 78 0 84 chr13 27077773 27078093 -74795076 - AluSx SINE Alu -19 293 1 332 250 13 0 chr13 27078363 27078439 -74794730 - MLT1K LTR MaLR -2 586 510 1765 205 68 20 chr13 27079318 27079369 -74793800 - MLT2D LTR ERVL 0 414 367 216 0 0 0 chr13 27079369 27079393 -74793776 + (CAGAGA)n Simple_repeat Simple_repeat 1 24 0 1765 205 68 20 chr13 27079393 27079736 -74793433 - MLT2D LTR ERVL -47 367 1 1574 174 55 4 chr13 27081519 27081794 -74791375 + AluJo SINE Alu 1 289 -23 533 219 75 147 chr13 27082559 27082933 -74790236 - L1MC4 LINE L1 -2 8040 7694 183 80 0 0 chr13 27082937 27082962 -74790207 + (T)n Simple_repeat Simple_repeat 1 25 0 8418 12 3 0 chr13 27082984 27084506 -74788663 - L1PA2 LINE L1 0 6155 4630 37455 36 29 2 chr13 27087891 27092400 -74780769 - L1PA2 LINE L1 -1514 4632 2 594 295 28 31 chr13 27092411 27092699 -74780470 - L1MC4 LINE L1 -364 7678 7392 1567 235 57 40 chr13 27092758 27093234 -74779935 + MLT1D LTR MaLR 22 505 0 527 230 11 11 chr13 27093807 27093985 -74779184 + CT-rich Low_complexity Low_complexity 3 180 0 233 205 0 0 chr13 27093985 27094024 -74779145 + polypyrimidine Low_complexity Low_complexity 2 40 0 231 167 0 0 chr13 27094141 27094183 -74778986 + CT-rich Low_complexity Low_complexity 1 42 0 317 147 0 29 chr13 27094193 27094261 -74778908 + (TCTCCC)n Simple_repeat Simple_repeat 3 68 0 1587 263 92 0 chr13 27094772 27095205 -74777964 - MER45C DNA AcHobo -480 473 1 235 255 0 0 chr13 27096479 27096530 -74776639 - MER63 DNA MER1_type 0 1060 1010 181 315 130 37 chr13 27096917 27097025 -74776144 - L2 LINE L2 -16 3256 3139 283 303 74 19 chr13 27097124 27097286 -74775883 + L1ME4a LINE L1 5945 6115 -6 1757 152 4 14 chr13 27097363 27097640 -74775529 - MER1B DNA MER1_type -65 274 1 268 321 15 45 chr13 27098861 27098995 -74774174 - L2 LINE L2 0 3272 3143 445 305 142 19 chr13 27101206 27101580 -74771589 - L1ME4a LINE L1 -202 5919 5500 233 238 0 32 chr13 27101630 27101693 -74771476 - MIR SINE MIR -114 148 88 274 242 33 44 chr13 27103395 27103486 -74769683 + MLT2E LTR ERVL 49 138 -490 655 241 38 72 chr13 27103857 27104098 -74769071 + L1ME3A LINE L1 5887 6118 -52 2363 108 3 0 chr13 27104098 27104404 -74768765 - AluSp SINE Alu -6 307 1 655 241 38 72 chr13 27104404 27104453 -74768716 + L1ME3A LINE L1 6118 6167 -3 242 254 4 4 chr13 27104519 27104596 -74768573 - MIR SINE MIR -45 163 86 2311 100 3 13 chr13 27105365 27105675 -74767494 - AluSx SINE Alu -5 307 1 281 355 45 0 chr13 27105779 27105889 -74767280 - L2 LINE L2 0 3272 3158 272 354 12 0 chr13 27107002 27107084 -74766085 + MIR SINE MIR 30 112 -96 185 362 8 31 chr13 27107076 27107203 -74765966 + MER5A DNA MER1_type 38 161 -28 * 6006 93 12 40 chr13 27109392 27110477 -74762692 + L1PA13 LINE L1 5105 6162 -1 4445 146 28 4 chr13 27111535 27112240 -74760929 - MER50 LTR ERV1 -12 722 1 230 325 50 15 chr13 27114772 27114905 -74758264 + MIR SINE MIR 1 144 -118 1729 113 50 108 chr13 27114905 27115261 -74757908 + THE1C LTR MaLR 1 333 -42 2114 143 0 0 chr13 27115261 27115554 -74757615 - AluSx SINE Alu -19 293 1 1729 113 50 108 chr13 27115554 27115595 -74757574 + THE1C LTR MaLR 333 375 0 577 208 130 0 chr13 27115809 27115963 -74757206 - MIR SINE MIR -30 232 59 1289 235 81 47 chr13 27115964 27116411 -74756758 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr13 27116671 27116692 -74756477 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 27116818 27116862 -74756307 + AT_rich Low_complexity Low_complexity 1 44 0 4288 77 266 3 chr13 27117712 27118366 -74754803 + LTR12 LTR ERV1 1 826 0 23 0 0 0 chr13 27118511 27118534 -74754635 + AT_rich Low_complexity Low_complexity 1 23 0 1126 205 117 56 chr13 27119985 27120327 -74752842 + MLT1A1 LTR MaLR 1 363 -2 223 276 48 38 chr13 27120364 27120469 -74752700 + L2 LINE L2 2394 2499 -815 2144 124 0 43 chr13 27120500 27120823 -74752346 - AluSx SINE Alu -3 309 1 266 257 43 107 chr13 27122092 27122275 -74750894 - MER5A DNA MER1_type 0 189 7 1226 300 72 9 chr13 27122944 27123457 -74749712 - MLT1G1 LTR MaLR -7 588 3 53 49 0 0 chr13 27126778 27126859 -74746310 + AT_rich Low_complexity Low_complexity 1 81 0 1596 203 15 30 chr13 27126961 27127360 -74745809 - MER69 DNA AcHobo 0 2526 2134 1597 259 100 34 chr13 27127361 27127949 -74745220 - MER69 DNA AcHobo -1899 627 1 195 353 60 26 chr13 27128072 27128338 -74744831 - L2 LINE L2 -1217 2097 1823 398 255 186 49 chr13 27128848 27129111 -74744058 - L1ME4a LINE L1 -261 5860 5562 2199 117 0 3 chr13 27129580 27129880 -74743289 - AluSq SINE Alu -13 300 2 197 373 36 0 chr13 27129999 27130109 -74743060 - L2 LINE L2 -245 3027 2914 320 260 41 18 chr13 27130611 27130761 -74742408 + MIR3 SINE MIR 30 181 -27 1720 134 76 44 chr13 27131538 27131839 -74741330 + AluJo SINE Alu 1 310 0 215 356 0 0 chr13 27132001 27132074 -74741095 - MIR SINE MIR -79 129 57 * 225 219 0 31 chr13 27132060 27132124 -74741045 + L2 LINE L2 3250 3311 -2 353 336 39 0 chr13 27132463 27132591 -74740578 + LTR67 LTR ERVL 110 242 -315 278 301 156 23 chr13 27132960 27133133 -74740036 + L2 LINE L2 3118 3313 0 188 255 121 64 chr13 27133868 27134009 -74739160 - L2 LINE L2 -175 3097 2949 180 316 0 0 chr13 27134200 27134257 -74738912 + L2 LINE L2 2907 2963 -309 522 269 0 44 chr13 27134345 27134505 -74738664 + L2 LINE L2 3161 3313 0 435 253 129 39 chr13 27134652 27134830 -74738339 - L2 LINE L2 -18 3295 3102 232 209 42 49 chr13 27135487 27135593 -74737576 - MIR SINE MIR -73 135 42 553 246 67 58 chr13 27135597 27135821 -74737348 - L1MC5 LINE L1 -30 7931 7706 233 283 0 0 chr13 27135902 27135962 -74737207 + (TGAA)n Simple_repeat Simple_repeat 1 60 0 290 164 18 0 chr13 27136025 27136080 -74737089 + AluS SINE Alu 2 57 -245 531 333 44 27 chr13 27136225 27136450 -74736719 - MER115 DNA AcHobo -375 318 90 731 228 109 50 chr13 27136579 27136607 -74736562 + MLT1E3 LTR MaLR 4 29 -595 1574 213 133 42 chr13 27136607 27137040 -74736129 + MLT2B1 LTR ERVL 3 484 -36 414 0 0 0 chr13 27137040 27137086 -74736083 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1574 213 133 42 chr13 27137086 27137127 -74736042 + MLT2B1 LTR ERVL 484 520 0 731 228 109 50 chr13 27137127 27137454 -74735715 + MLT1E3 LTR MaLR 29 387 -237 503 132 0 0 chr13 27137570 27137646 -74735523 - AluS SINE Alu -235 77 2 217 273 45 34 chr13 27138891 27138979 -74734190 - MIR3 SINE MIR -2 206 118 240 291 97 10 chr13 27139280 27139383 -74733786 + MIR3 SINE MIR 85 196 -12 473 92 0 0 chr13 27140270 27140335 -74732834 + Alu SINE Alu 227 291 -19 667 251 96 17 chr13 27140355 27140594 -74732575 + MER112 DNA MER1_type 2 259 -1 221 312 0 64 chr13 27141019 27141128 -74732041 + MIR SINE MIR 87 188 -74 399 301 18 24 chr13 27141251 27141417 -74731752 - MIR SINE MIR -16 246 82 7501 42 5 0 chr13 27141525 27143084 -74730085 + L1PA6 LINE L1 4585 6149 -5 198 167 0 0 chr13 27143099 27143135 -74730034 + A-rich Low_complexity Low_complexity 1 36 0 244 266 133 16 chr13 27143136 27143264 -74729905 + L1MC5 LINE L1 7743 7885 -76 973 198 62 41 chr13 27143273 27143516 -74729653 + L1MC/D LINE L1 5387 5634 -2174 218 223 146 29 chr13 27143760 27143863 -74729306 - MIR3 SINE MIR -27 181 67 806 180 0 0 chr13 27144274 27144402 -74728767 + FLAM_C SINE Alu 1 128 -5 2197 120 7 10 chr13 27145534 27145842 -74727327 + AluSx SINE Alu 2 308 -4 622 197 116 34 chr13 27145842 27146075 -74727094 + L1M4 LINE L1 3091 3342 -2804 2771 221 68 41 chr13 27146097 27146786 -74726383 + MER21B LTR ERV1 20 732 -131 192 77 0 0 chr13 27146786 27146812 -74726357 + (AATTG)n Simple_repeat Simple_repeat 1 26 0 2771 221 68 41 chr13 27146812 27146876 -74726293 + MER21B LTR ERV1 732 793 -70 1459 228 32 39 chr13 27146906 27147341 -74725828 + L1M4 LINE L1 3340 3771 -2375 2241 107 3 19 chr13 27147501 27147810 -74725359 + AluSx SINE Alu 5 308 -4 464 200 0 27 chr13 27147944 27148054 -74725115 + L1MC5 LINE L1 7808 7914 -47 2577 239 83 29 chr13 27148116 27149718 -74723451 + L1M4 LINE L1 48 1821 -4825 229 274 43 60 chr13 27150386 27150503 -74722666 - MIR SINE MIR 0 262 148 2223 110 0 0 chr13 27150972 27151271 -74721898 - AluSq SINE Alu -14 299 1 425 222 21 65 chr13 27151321 27151526 -74721643 - MLT1H LTR MaLR -53 496 241 1683 168 3 0 chr13 27151832 27152117 -74721052 + AluJb SINE Alu 5 290 -22 258 296 0 0 chr13 27152866 27152920 -74720249 + MIR SINE MIR 94 147 -115 196 237 51 34 chr13 27152926 27152985 -74720184 - L2 LINE L2 0 3272 3213 1215 102 6 6 chr13 27153476 27153652 -74719517 + L1P5 LINE L1 5570 5745 -409 426 70 23 105 chr13 27153752 27153838 -74719331 + L1MB5 LINE L1 6090 6168 -6 240 277 53 11 chr13 27153852 27153946 -74719223 - MLT1J LTR MaLR -310 201 104 219 209 99 55 chr13 27154153 27154244 -74718925 + MIR3 SINE MIR 89 183 -25 2702 191 111 44 chr13 27154930 27155630 -74717539 - MER21B LTR ERV1 -57 806 60 2649 184 86 12 chr13 27155736 27156465 -74716704 + L1MB3 LINE L1 4782 5593 -590 1509 134 14 28 chr13 27156469 27156752 -74716417 + L1MB3 LINE L1 5904 6182 -1 818 280 36 18 chr13 27156784 27157170 -74715999 + L1M4 LINE L1 2265 2657 -3989 797 286 97 19 chr13 27157580 27157951 -74715218 + LTR16C LTR ERVL 92 491 0 475 318 179 14 chr13 27158126 27158478 -74714691 - L2 LINE L2 -765 2549 2140 508 254 164 0 chr13 27158737 27158902 -74714267 + MIR SINE MIR 14 205 -57 2303 91 3 0 chr13 27158975 27159282 -74713887 + AluSp SINE Alu 1 308 -5 911 176 74 0 chr13 27159959 27160135 -74713034 - MER5A DNA MER1_type 0 189 1 684 251 25 6 chr13 27160562 27160725 -74712444 - Charlie8 DNA MER1_type -2241 176 11 215 196 36 0 chr13 27160735 27160791 -74712378 - L2 LINE L2 -541 2773 2716 642 225 33 33 chr13 27161215 27161366 -74711803 - MLT1G LTR MaLR 0 590 440 216 135 216 27 chr13 27161499 27161573 -74711596 + MIR SINE MIR 33 120 -88 1951 129 7 7 chr13 27162093 27162387 -74710782 - AluSx SINE Alu -18 294 1 601 216 32 16 chr13 27162387 27162563 -74710606 - L1MEc LINE L1 -4310 2086 1905 2459 281 35 29 chr13 27162583 27163353 -74709816 - HERV16 LTR ERVL -3667 1329 555 648 165 0 19 chr13 27163438 27163541 -74709628 - FRAM SINE Alu -16 160 60 462 274 68 7 chr13 27163908 27164054 -74709115 + MER117 DNA MER1_type 6 160 -37 196 270 243 0 chr13 27164252 27164326 -74708843 - MIR3 SINE MIR -54 154 63 1789 159 0 3 chr13 27164900 27165201 -74707968 - AluJb SINE Alu -12 300 1 372 301 9 0 chr13 27165270 27165383 -74707786 - MIR SINE MIR -70 192 79 385 333 18 0 chr13 27166601 27166715 -74706454 + MIR3 SINE MIR 86 201 -7 696 97 11 0 chr13 27166876 27166969 -74706200 - AluSq/x SINE Alu -204 108 15 505 317 112 18 chr13 27167525 27167749 -74705420 + MIR SINE MIR 9 253 -9 207 180 45 112 chr13 27167784 27167873 -74705296 + MIR SINE MIR 69 151 -57 1780 144 7 7 chr13 27168561 27168853 -74704316 + AluSx SINE Alu 1 292 -20 393 211 35 35 chr13 27169018 27169132 -74704037 - MER112 DNA MER1_type 0 260 147 2155 59 0 24 chr13 27169182 27169493 -74703676 + AluY SINE Alu 1 304 0 311 270 53 112 chr13 27170124 27170276 -74702893 - MIR SINE MIR -65 143 1 1080 123 57 75 chr13 27170856 27171084 -74702085 - AluJo SINE Alu 0 312 89 794 220 109 43 chr13 27171184 27171246 -74701923 - L1MEc LINE L1 -2987 3228 3172 2117 111 3 0 chr13 27171246 27171553 -74701616 - AluSp SINE Alu -5 308 1 794 220 109 43 chr13 27171553 27171886 -74701283 - L1MEc LINE L1 -3043 3172 2807 * 1232 235 40 9 chr13 27171879 27172300 -74700869 - L1MEc LINE L1 -3873 2523 2090 2058 136 0 3 chr13 27172303 27172611 -74700558 - AluSx SINE Alu -5 307 1 287 288 0 0 chr13 27173479 27173545 -74699624 - MIR SINE MIR -13 249 184 316 329 169 30 chr13 27173743 27173980 -74699189 - L3 LINE CR1 -29 1548 1279 560 319 32 0 chr13 27174474 27174631 -74698538 + L2 LINE L2 3111 3272 0 197 118 59 0 chr13 27174916 27174950 -74698219 + MIR SINE MIR 109 144 -64 200 326 38 53 chr13 27175269 27175401 -74697768 - L3 LINE CR1 -32 1545 1416 607 321 80 13 chr13 27175713 27175950 -74697219 + MIR SINE MIR 9 261 -1 303 293 154 8 chr13 27176008 27176131 -74697038 + MIR SINE MIR 58 198 -64 311 296 10 0 chr13 27176139 27176237 -74696932 + MER94 DNA DNA 1 99 -35 1760 64 0 0 chr13 27176308 27176527 -74696642 - AluY SINE Alu -9 302 84 1467 177 7 40 chr13 27176596 27176895 -74696274 + AluJo SINE Alu 19 307 -5 216 198 359 38 chr13 27177237 27177343 -74695826 - MIR SINE MIR -107 155 16 263 307 193 9 chr13 27177848 27177962 -74695207 + MIR SINE MIR 96 230 -32 22 0 0 0 chr13 27177981 27178003 -74695166 + AT_rich Low_complexity Low_complexity 1 22 0 1907 112 24 10 chr13 27178007 27178301 -74694868 + AluSx SINE Alu 1 298 -14 456 337 87 0 chr13 27178428 27178600 -74694569 + MIR3 SINE MIR 2 143 -65 2165 104 0 3 chr13 27179129 27179426 -74693743 - AluSq SINE Alu -15 298 3 261 242 17 92 chr13 27179478 27179598 -74693571 + L2 LINE L2 3151 3261 -52 767 180 16 0 chr13 27179625 27179753 -74693416 + AluJo SINE Alu 2 131 -181 1950 137 0 0 chr13 27179945 27180304 -74692865 - AluSx SINE Alu 0 359 1 691 305 32 28 chr13 27180365 27180614 -74692555 + MIR SINE MIR 7 256 -6 1999 123 7 13 chr13 27181416 27181717 -74691452 + AluSx SINE Alu 1 299 -13 898 188 0 0 chr13 27181717 27181877 -74691292 + AluJo SINE Alu 134 293 -19 184 248 67 86 chr13 27182801 27182906 -74690263 + MIR SINE MIR 30 132 -76 3592 271 69 63 chr13 27183065 27183337 -74689832 - HAL1 LINE L1 -429 2078 1809 1694 177 18 81 chr13 27183337 27183722 -74689447 - MLT1A1 LTR MaLR -4 361 1 3592 271 69 63 chr13 27183722 27185513 -74687656 - HAL1 LINE L1 -698 1809 3 904 184 0 0 chr13 27185770 27185922 -74687247 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr13 27186068 27186092 -74687077 + AT_rich Low_complexity Low_complexity 1 24 0 2094 86 0 24 chr13 27187590 27187881 -74685288 - AluY SINE Alu -12 299 16 547 181 16 50 chr13 27188161 27188176 -74684993 + L1P3 LINE L1 5477 5491 -671 4702 57 2 12 chr13 27188176 27188771 -74684398 - L1PA7 LINE L1 0 6154 5566 547 181 16 50 chr13 27188771 27188867 -74684302 + L1PA7 LINE L1 5491 5581 -581 2124 112 0 0 chr13 27188871 27189166 -74684003 + AluY SINE Alu 1 295 -16 944 260 22 5 chr13 27189495 27189718 -74683451 - MIR SINE MIR 0 262 36 437 224 28 56 chr13 27189718 27189861 -74683308 - L1MC/D LINE L1 -2012 5796 5658 1986 123 13 25 chr13 27189900 27190216 -74682953 + AluSx SINE Alu 1 312 0 231 336 44 9 chr13 27190587 27190700 -74682469 + MIR3 SINE MIR 38 154 -54 433 355 15 30 chr13 27190749 27190952 -74682217 + L2 LINE L2 2848 3047 -266 1007 226 51 117 chr13 27194647 27195217 -74677952 + L2 LINE L2 2787 3313 0 2903 205 62 10 chr13 27196700 27197314 -74675855 - MER82 DNA MER2_type -7 646 1 199 201 191 92 chr13 27197365 27197488 -74675681 - MIR SINE MIR -66 142 16 415 314 39 13 chr13 27197777 27197930 -74675239 + MIR3 SINE MIR 9 165 -43 21 36 0 0 chr13 27198580 27198608 -74674561 + AT_rich Low_complexity Low_complexity 1 28 0 408 291 148 22 chr13 27199909 27200132 -74673037 + MIR SINE MIR 10 260 -2 1081 179 7 80 chr13 27200270 27200404 -74672765 + MLT1D LTR MaLR 250 317 -150 861 132 0 22 chr13 27200404 27200540 -74672629 - FLAM_C SINE Alu 0 133 1 1081 179 7 80 chr13 27200540 27200681 -74672488 + MLT1D LTR MaLR 317 467 0 267 246 8 67 chr13 27200805 27200939 -74672230 + GA-rich Low_complexity Low_complexity 5 130 0 961 248 86 72 chr13 27201174 27201719 -74671450 + HAL1 LINE L1 1238 1790 -717 1146 216 46 0 chr13 27201778 27201996 -74671173 + AluJb SINE Alu 85 312 0 287 164 16 0 chr13 27201996 27202057 -74671112 + GA-rich Low_complexity Low_complexity 4 65 0 783 243 112 36 chr13 27202063 27202501 -74670668 + HAL1 LINE L1 1869 2349 -158 2188 91 10 7 chr13 27202501 27202799 -74670370 + AluSq SINE Alu 1 299 -14 783 243 112 36 chr13 27202799 27202853 -74670316 + HAL1 LINE L1 2349 2398 -109 338 0 0 23 chr13 27202881 27202924 -74670245 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7917 8 0 0 chr13 27202924 27203963 -74669206 - L1PA3 LINE L1 -10 6145 5108 7064 32 0 0 chr13 27203963 27204844 -74668325 + L1PA3 LINE L1 4229 5109 -1037 319 311 96 7 chr13 27205002 27205137 -74668032 - MIR SINE MIR -81 181 35 510 295 31 16 chr13 27207398 27207591 -74665578 + MIR SINE MIR 39 234 -28 271 340 17 8 chr13 27207834 27208044 -74665125 - L1M3 LINE L1 -345 5826 5617 1821 100 52 8 chr13 27209747 27209997 -74663172 - AluSc SINE Alu -5 304 44 213 333 0 0 chr13 27212397 27212457 -74660712 + CT-rich Low_complexity Low_complexity 1 60 0 755 219 38 0 chr13 27215779 27215939 -74657230 + MER5A DNA MER1_type 5 170 -19 648 309 88 5 chr13 27219089 27219306 -74653863 - MIR SINE MIR -6 256 22 327 325 81 16 chr13 27219916 27220039 -74653130 + MIR SINE MIR 1 131 -131 563 179 50 1 chr13 27220310 27220443 -74652726 + MLT1B LTR MaLR 1 125 -265 1171 181 15 31 chr13 27220532 27220792 -74652377 + MLT1B LTR MaLR 135 390 0 202 167 33 17 chr13 27220842 27220902 -74652267 + T-rich Low_complexity Low_complexity 5 65 0 24 0 0 0 chr13 27220906 27220930 -74652239 + AT_rich Low_complexity Low_complexity 1 24 0 511 241 43 32 chr13 27222153 27222340 -74650829 - MLT1C LTR MaLR -3 464 276 1929 141 0 23 chr13 27222388 27222692 -74650477 - AluSx SINE Alu -15 297 1 238 269 26 13 chr13 27223119 27223197 -74649972 + L2 LINE L2 2992 3070 -202 2328 107 0 0 chr13 27224111 27224466 -74648703 - L1P LINE L1 -1263 4883 4529 231 189 139 50 chr13 27224868 27225048 -74648121 - Charlie7 DNA MER1_type -67 2545 2350 667 258 113 56 chr13 27225053 27225355 -74647814 - MLT1H LTR MaLR 0 549 231 1735 137 8 4 chr13 27225383 27225645 -74647524 - AluSc SINE Alu -3 306 44 3759 171 66 34 chr13 27225645 27226525 -74646644 - L1MC2 LINE L1 -14 6330 5423 1684 209 124 26 chr13 27226694 27227421 -74645748 - Charlie7 DNA MER1_type -294 2318 1521 348 254 164 38 chr13 27227421 27227634 -74645535 - Charlie7 DNA MER1_type -2286 326 87 737 206 139 10 chr13 27228292 27228486 -74644683 - MER20 DNA MER1_type 0 219 1 1335 270 24 34 chr13 27228869 27229353 -74643816 + L2 LINE L2 2542 3020 -293 1862 155 21 3 chr13 27229353 27229682 -74643487 + MSTB LTR MaLR 91 425 -1 1326 198 49 34 chr13 27230000 27230324 -74642845 + MLT1A1 LTR MaLR 35 363 -2 1949 160 7 74 chr13 27230516 27230934 -74642235 - MLT1B LTR MaLR 0 390 1 24 0 0 0 chr13 27230934 27230958 -74642211 + AT_rich Low_complexity Low_complexity 1 24 0 2011 154 3 7 chr13 27231108 27231413 -74641756 - AluSx SINE Alu -4 308 5 223 327 19 0 chr13 27231545 27231597 -74641572 + L2 LINE L2 3134 3186 -86 297 304 68 68 chr13 27231690 27231940 -74641229 + MLT1J LTR MaLR 101 350 -161 1356 274 68 54 chr13 27231940 27233131 -74640038 - L1MEd LINE L1 -4604 1525 323 383 379 9 23 chr13 27233431 27233650 -74639519 + L1MC4a LINE L1 5708 5923 -1885 259 212 24 71 chr13 27233841 27233926 -74639243 + MIR SINE MIR 182 262 0 2526 69 0 0 chr13 27234038 27234341 -74638828 - AluSp SINE Alu -10 303 1 1846 220 82 76 chr13 27235412 27235581 -74637588 - MER50 LTR ERV1 0 734 567 2151 93 17 0 chr13 27235581 27235872 -74637297 + AluSq SINE Alu 1 296 -17 1846 220 82 76 chr13 27235872 27235885 -74637284 - MER50 LTR ERV1 -167 567 556 284 0 28 0 chr13 27235885 27235921 -74637248 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1846 220 82 76 chr13 27235921 27236460 -74636709 - MER50 LTR ERV1 -178 556 8 222 37 0 0 chr13 27237474 27237501 -74635668 - MIR SINE MIR -64 144 118 238 254 70 0 chr13 27238192 27238273 -74634896 + MIR3 SINE MIR 75 159 -49 2317 101 3 0 chr13 27239006 27239303 -74633866 - AluSg SINE Alu -12 298 1 778 330 83 46 chr13 27239956 27240219 -74632950 + L2 LINE L2 2329 2581 -691 2154 141 82 25 chr13 27240219 27240624 -74632545 - MSTA LTR MaLR 0 428 1 778 330 83 46 chr13 27240624 27241063 -74632106 + L2 LINE L2 2581 3064 -208 317 242 0 11 chr13 27241383 27241478 -74631691 - L1ME LINE L1 -3775 2305 2212 228 347 8 0 chr13 27241757 27241881 -74631288 - L1ME LINE L1 -4579 1682 1558 436 268 42 38 chr13 27241912 27242125 -74631044 + L1MC5 LINE L1 7321 7534 -427 431 283 73 26 chr13 27242505 27242696 -74630473 - L1ME LINE L1 -4814 1268 1069 302 278 38 22 chr13 27242760 27242996 -74630173 - L1ME LINE L1 -5040 1043 807 368 319 128 14 chr13 27243787 27243928 -74629241 + L2 LINE L2 3116 3272 0 485 244 37 7 chr13 27243930 27244065 -74629104 - MIR SINE MIR -38 224 86 25 31 0 0 chr13 27244412 27244444 -74628725 + AT_rich Low_complexity Low_complexity 1 32 0 632 105 21 6 chr13 27244445 27244591 -74628578 - L1MC1 LINE L1 0 6333 6155 258 244 64 0 chr13 27245119 27245197 -74627972 + MIR SINE MIR 93 175 -87 291 54 0 0 chr13 27246167 27246204 -74626965 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 268 177 26 chr13 27246764 27246966 -74626203 - MIR3 SINE MIR -4 258 35 208 368 110 13 chr13 27247378 27247606 -74625563 + L2 LINE L2 2926 3175 -97 289 268 147 45 chr13 27248590 27248738 -74624431 + MIR SINE MIR 23 189 -73 478 234 117 7 chr13 27248738 27248892 -74624277 + MER5B DNA MER1_type 4 174 -4 203 140 18 105 chr13 27250317 27250374 -74622795 + L2 LINE L2 3175 3226 -87 501 291 34 17 chr13 27250723 27250894 -74622275 - MIR SINE MIR -65 143 5 572 246 40 75 chr13 27251798 27251882 -74621287 - MIR SINE MIR -70 192 107 186 43 0 0 chr13 27251882 27251905 -74621264 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 572 246 40 75 chr13 27251905 27252019 -74621150 - MIR SINE MIR -155 107 1 1056 146 0 0 chr13 27253777 27253955 -74619214 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 504 294 29 69 chr13 27253965 27254241 -74618928 + MLT1K LTR MaLR 319 583 -5 291 307 105 18 chr13 27254656 27254770 -74618399 - L2 LINE L2 -16 3256 3133 475 315 30 0 chr13 27255050 27255215 -74617954 + L2 LINE L2 3133 3302 -11 621 315 97 59 chr13 27255227 27255700 -74617469 - L3 LINE CR1 -407 1170 680 343 308 304 9 chr13 27255789 27256111 -74617058 - L3 LINE CR1 -880 697 281 185 0 0 39 chr13 27257475 27257501 -74615668 + (TAA)n Simple_repeat Simple_repeat 2 26 0 28 29 0 0 chr13 27257737 27257772 -74615397 + AT_rich Low_complexity Low_complexity 1 35 0 2171 133 0 0 chr13 27258054 27258356 -74614813 + AluSg SINE Alu 2 303 -7 401 316 51 19 chr13 27260331 27260489 -74612680 + MIR3 SINE MIR 3 165 -43 289 287 37 0 chr13 27260995 27261001 -74612168 + (CATATA)n Simple_repeat Simple_repeat 3 7 -107 248 75 0 25 chr13 27261001 27261041 -74612128 + (TATG)n Simple_repeat Simple_repeat 2 40 0 289 287 37 0 chr13 27261041 27261142 -74612027 + (CATATA)n Simple_repeat Simple_repeat 7 114 0 180 77 0 0 chr13 27261841 27261867 -74611302 + (TAGA)n Simple_repeat Simple_repeat 3 28 0 315 0 0 0 chr13 27262131 27262166 -74611003 + (CA)n Simple_repeat Simple_repeat 2 36 0 2842 105 54 13 chr13 27262391 27262838 -74610331 - MER4C LTR ERV1 0 465 1 1019 121 0 0 chr13 27262876 27263017 -74610152 + AluSg/x SINE Alu 163 303 -9 291 325 5 78 chr13 27263115 27263246 -74609923 + MIR SINE MIR 34 146 -116 2257 98 0 14 chr13 27263246 27263542 -74609627 + AluSx SINE Alu 14 305 -7 291 325 5 78 chr13 27263542 27263616 -74609553 + MIR SINE MIR 146 224 -38 1427 207 55 65 chr13 27263869 27264362 -74608807 + L1 LINE L1 2294 2781 -3365 1034 209 4 4 chr13 27264364 27264594 -74608575 + L1 LINE L1 3776 4005 -2141 3819 165 98 31 chr13 27264594 27265516 -74607653 + L1MC3 LINE L1 6803 7785 0 330 291 112 8 chr13 27265945 27266079 -74607090 - MIR SINE MIR -68 194 47 286 339 50 16 chr13 27266881 27267002 -74606167 + L3 LINE CR1 1381 1505 -72 2430 157 16 9 chr13 27267647 27268086 -74605083 - LTR47B LTR ERVL -1 442 1 2267 95 10 0 chr13 27268249 27268543 -74604626 + AluSx SINE Alu 1 297 -15 983 180 14 24 chr13 27268574 27268785 -74604384 + L1MB3 LINE L1 5958 6166 -17 22 35 0 0 chr13 27268790 27268819 -74604350 + AT_rich Low_complexity Low_complexity 1 29 0 199 265 157 20 chr13 27269284 27269386 -74603783 - L3 LINE CR1 -170 1407 1292 1143 315 139 30 chr13 27270195 27271124 -74602045 - L2 LINE L2 -1 3312 2281 555 326 39 72 chr13 27271122 27271512 -74601657 - L2 LINE L2 0 3272 2896 * 2222 134 0 20 chr13 27271736 27272080 -74601089 - MER1B DNA MER1_type 0 337 1 1670 176 30 19 chr13 27273287 27273650 -74599519 + L1MC2 LINE L1 5969 6335 -9 1008 323 132 0 chr13 27273724 27274157 -74599012 - L2 LINE L2 -1089 2225 1736 230 293 84 58 chr13 27274185 27274218 -74598951 - L2 LINE L2 -2228 1086 1055 2537 46 7 3 chr13 27274218 27274522 -74598647 + AluY SINE Alu 1 305 -6 230 293 84 58 chr13 27274522 27274679 -74598490 - L2 LINE L2 -2259 1055 891 385 291 67 22 chr13 27275144 27275278 -74597891 - MIR SINE MIR -78 184 45 24 77 0 0 chr13 27276035 27276087 -74597082 + AT_rich Low_complexity Low_complexity 1 52 0 380 360 48 36 chr13 27276101 27276351 -74596818 + L1ME LINE L1 58 310 -5809 643 298 46 36 chr13 27276872 27277106 -74596063 + L1ME LINE L1 1097 1327 -4983 2266 128 0 0 chr13 27277106 27277418 -74595751 - AluSq SINE Alu -1 312 1 643 298 46 36 chr13 27277418 27277766 -74595403 + L1ME LINE L1 1327 1729 -4581 39 22 0 0 chr13 27277791 27277837 -74595332 + AT_rich Low_complexity Low_complexity 1 46 0 424 349 121 8 chr13 27277849 27278098 -74595071 + L1ME LINE L1 1832 2108 -4202 1941 245 68 56 chr13 27278125 27278555 -74594614 + L1MEc LINE L1 1372 1795 -4420 2368 93 3 0 chr13 27278555 27278865 -74594304 + AluSp SINE Alu 3 313 0 1941 245 68 56 chr13 27278865 27279912 -74593257 + L1MEc LINE L1 1795 2941 -3274 489 336 68 32 chr13 27280363 27280606 -74592563 + L2 LINE L2 2917 3179 -134 1166 201 146 19 chr13 27280606 27280874 -74592295 + AluJo SINE Alu 1 302 0 489 336 68 32 chr13 27280874 27280999 -74592170 + L2 LINE L2 3179 3298 -15 686 270 76 30 chr13 27281026 27281330 -74591839 + L2 LINE L2 2996 3313 0 250 191 0 32 chr13 27281870 27281933 -74591236 + GA-rich Low_complexity Low_complexity 3 63 0 697 190 0 22 chr13 27282314 27282451 -74590718 - MER94 DNA DNA 0 134 1 1162 152 52 44 chr13 27282779 27283029 -74590140 + MER33 DNA MER1_type 1 252 -72 262 280 270 35 chr13 27283666 27283866 -74589303 - L2 LINE L2 -484 2830 2584 336 306 181 14 chr13 27284068 27284284 -74588885 - L1ME4a LINE L1 -268 5853 5602 22 0 0 0 chr13 27284437 27284459 -74588710 + AT_rich Low_complexity Low_complexity 1 22 0 181 301 161 21 chr13 27284470 27284563 -74588606 - L2 LINE L2 -1 3271 3166 21 36 0 0 chr13 27284677 27284705 -74588464 + AT_rich Low_complexity Low_complexity 1 28 0 1361 270 64 33 chr13 27285584 27286332 -74586837 - L2 LINE L2 0 3313 2542 539 171 86 0 chr13 27286470 27286587 -74586582 + MSTB-int LTR MaLR 1520 1646 -5 2177 159 55 15 chr13 27286599 27287001 -74586168 + MSTB LTR MaLR 9 426 0 28 61 0 0 chr13 27287724 27287773 -74585396 + AT_rich Low_complexity Low_complexity 1 49 0 198 91 0 0 chr13 27288234 27288267 -74584902 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6702 68 9 2 chr13 27288267 27289430 -74583739 - L1PA7 LINE L1 -18 6136 4979 180 0 0 0 chr13 27289451 27289471 -74583698 + (C)n Simple_repeat Simple_repeat 1 20 0 2096 29 25 0 chr13 27340044 27340286 -74532883 - L1PA4 LINE L1 -1 6154 5907 6288 148 24 30 chr13 27340543 27340887 -74532282 + L1MA4 LINE L1 4145 4489 -1811 1451 138 5 5 chr13 27340887 27341104 -74532065 - AluSq SINE Alu -96 217 1 6288 148 24 30 chr13 27341104 27342926 -74530243 + L1MA4 LINE L1 4489 6294 -6 1302 195 60 4 chr13 27342953 27343220 -74529949 + L1ME1 LINE L1 5876 6157 -9 2463 136 35 0 chr13 27343585 27343954 -74529215 - MLT1B LTR MaLR 0 390 9 453 351 65 10 chr13 27346141 27346434 -74526735 + L2 LINE L2 2426 2734 -580 268 258 30 0 chr13 27346560 27346626 -74526543 + MLT1J2 LTR MaLR 67 134 -316 269 323 148 37 chr13 27346955 27347252 -74525917 + L2 LINE L2 2918 3247 -25 514 247 340 19 chr13 27347338 27347662 -74525507 + L2 LINE L2 2886 3313 0 239 321 133 64 chr13 27348699 27349060 -74524109 + L3 LINE CR1 547 932 -645 207 153 0 136 chr13 27349085 27349144 -74524025 + L2 LINE L2 2326 2376 -938 2079 136 0 0 chr13 27349290 27349584 -74523585 - AluSx SINE Alu -18 294 1 220 274 109 154 chr13 27349584 27349850 -74523319 - L2 LINE L2 -2 3270 3017 1122 202 10 5 chr13 27349867 27350075 -74523094 - MER3 DNA MER1_type 0 209 1 2098 131 0 13 chr13 27350101 27350414 -74522755 + AluSx SINE Alu 1 309 -3 1049 313 114 39 chr13 27350879 27351807 -74521362 + L2 LINE L2 2089 3091 -181 1166 216 166 38 chr13 27351840 27352262 -74520907 + MLT1D LTR MaLR 22 497 -8 703 232 85 0 chr13 27352924 27353088 -74520081 - MER45A DNA AcHobo 0 178 1 5129 101 0 25 chr13 27353109 27353860 -74519309 + L1PB1 LINE L1 5420 6151 0 786 270 72 41 chr13 27354315 27354634 -74518535 - MER102b DNA MER1_type -9 332 4 496 286 95 5 chr13 27354653 27354863 -74518306 + MIR SINE MIR 34 262 0 256 329 0 0 chr13 27355254 27355324 -74517845 + (CACG)n Simple_repeat Simple_repeat 4 73 0 915 176 6 29 chr13 27357269 27357439 -74515730 - FRAM SINE Alu 0 166 1 296 188 0 118 chr13 27357448 27357533 -74515636 + MIR SINE MIR 110 184 -78 588 181 145 24 chr13 27357914 27358080 -74515089 + MER53 DNA DNA 1 186 -3 2013 207 37 86 chr13 27359061 27359631 -74513538 + MLT1F LTR MaLR 1 542 0 542 245 50 31 chr13 27359669 27359828 -74513341 - MLT1I LTR MaLR -147 262 101 1402 167 25 16 chr13 27360325 27360570 -74512599 + L1MD1 LINE L1 3 249 -6291 1597 230 32 60 chr13 27360582 27361168 -74512001 + L1MD1 LINE L1 236 1038 -5502 1398 219 138 35 chr13 27361186 27361642 -74511527 - MLT1D LTR MaLR -2 503 1 4839 190 55 20 chr13 27361678 27361828 -74511341 + L1MD1 LINE L1 5011 5154 -1482 2278 108 7 0 chr13 27361828 27362124 -74511045 + AluSx SINE Alu 1 298 -14 4839 190 55 20 chr13 27362124 27363537 -74509632 + L1MD1 LINE L1 5154 6636 0 215 30 0 30 chr13 27363638 27363671 -74509498 + (TTA)n Simple_repeat Simple_repeat 3 34 0 494 269 113 72 chr13 27363883 27364299 -74508870 + L1ME LINE L1 5381 5813 -308 429 20 0 0 chr13 27364299 27364349 -74508820 + (CA)n Simple_repeat Simple_repeat 1 50 0 26 64 0 0 chr13 27364433 27364480 -74508689 + AT_rich Low_complexity Low_complexity 1 47 0 4579 37 0 2 chr13 27364480 27365018 -74508151 - L1PA4 LINE L1 -11 6144 5608 243 351 41 23 chr13 27365539 27365710 -74507459 + MIR SINE MIR 49 222 -40 254 304 152 6 chr13 27365745 27365916 -74507253 + MIR SINE MIR 2 197 -65 202 211 0 0 chr13 27365930 27365968 -74507201 - MIR SINE MIR -6 256 219 * 234 200 22 0 chr13 27365935 27365980 -74507189 - L2 LINE L2 -17 3255 3210 1963 157 0 10 chr13 27366110 27366415 -74506754 - AluJb SINE Alu -10 302 1 544 279 111 13 chr13 27367256 27367482 -74505687 + MIR SINE MIR 12 259 -3 332 291 136 31 chr13 27371325 27371495 -74501674 + MIR SINE MIR 6 199 -63 186 340 0 0 chr13 27371532 27371582 -74501587 - L2 LINE L2 -16 3297 3248 271 0 0 77 chr13 27372146 27372185 -74500984 - L1P LINE L1 -830 5342 5307 683 157 0 0 chr13 27372185 27372293 -74500876 - L1PA4 LINE L1 -69 6086 5979 1834 101 4 14 chr13 27372406 27372683 -74500486 - L1PA4 LINE L1 -804 5342 5069 6986 40 0 0 chr13 27372683 27373528 -74499641 + L1PA4 LINE L1 5333 6181 0 269 311 33 13 chr13 27373579 27373730 -74499439 - L2 LINE L2 -1209 2105 1952 298 303 13 40 chr13 27375084 27375236 -74497933 + L2 LINE L2 3165 3312 -1 934 66 29 0 chr13 27375364 27375501 -74497668 + (TTTC)n Simple_repeat Simple_repeat 1 141 0 289 269 77 31 chr13 27378519 27378649 -74494520 - MIR SINE MIR -56 206 71 313 295 107 0 chr13 27379021 27379133 -74494036 - L2 LINE L2 -28 3244 3121 238 208 152 88 chr13 27380915 27381040 -74492129 + L2 LINE L2 3136 3268 -4 189 0 0 0 chr13 27381081 27381102 -74492067 + (A)n Simple_repeat Simple_repeat 1 21 0 182 314 86 29 chr13 27382656 27382831 -74490338 + MIR SINE MIR 77 261 -1 1853 157 0 28 chr13 27382866 27383184 -74489985 + AluJo SINE Alu 1 309 -3 330 26 0 0 chr13 27383819 27383858 -74489311 + (TG)n Simple_repeat Simple_repeat 2 40 0 1134 52 0 8 chr13 27384239 27384373 -74488796 + AluY SINE Alu 1 133 -178 282 248 44 35 chr13 27384428 27384541 -74488628 + MIR SINE MIR 79 192 -70 368 331 110 33 chr13 27384787 27385152 -74488017 - L2 LINE L2 -8 3264 2872 1438 199 58 17 chr13 27385383 27385556 -74487613 - AluJo SINE Alu -4 308 117 366 61 0 0 chr13 27385556 27385605 -74487564 + (TG)n Simple_repeat Simple_repeat 2 50 0 1438 199 58 17 chr13 27385605 27385723 -74487446 - AluJo SINE Alu -195 117 5 2224 138 24 162 chr13 27387869 27388407 -74484762 + LTR32 LTR ERVL 7 470 -1 188 348 22 22 chr13 27388556 27388645 -74484524 - MIR SINE MIR -172 90 2 404 251 78 63 chr13 27388716 27388907 -74484262 + MIR3 SINE MIR 15 208 0 203 294 44 0 chr13 27389191 27389259 -74483910 + MIR SINE MIR 96 166 -96 478 288 169 5 chr13 27390636 27390855 -74482314 + MIR SINE MIR 3 257 -5 517 222 136 25 chr13 27390863 27391061 -74482108 - MIR SINE MIR -6 256 37 242 235 0 74 chr13 27391271 27391352 -74481817 + MLT1L LTR MaLR 1 75 -540 2163 176 13 10 chr13 27391375 27391761 -74481408 - L1MB3 LINE L1 -109 6074 5688 2547 147 71 16 chr13 27391761 27392209 -74480960 + MER44D DNA MER2_type 1 528 -77 2132 172 8 3 chr13 27392297 27392658 -74480511 + MLT1A1 LTR MaLR 1 363 -2 218 301 0 24 chr13 27393430 27393513 -74479656 + GA-rich Low_complexity Low_complexity 2 82 0 359 309 57 11 chr13 27393933 27394108 -74479061 - MIR SINE MIR -59 203 21 249 260 0 13 chr13 27394503 27394580 -74478589 + GA-rich Low_complexity Low_complexity 2 77 0 359 157 1 28 chr13 27395625 27395697 -74477472 + L1MC2 LINE L1 5861 5931 -247 * 6508 156 43 17 chr13 27395688 27396885 -74476284 - L1MCa LINE L1 -5179 1247 20 1177 185 29 8 chr13 27396888 27397126 -74476043 + L1MB8 LINE L1 5914 6156 -22 284 252 0 19 chr13 27397135 27397238 -74475931 + GA-rich Low_complexity Low_complexity 2 102 0 194 229 0 16 chr13 27397267 27397328 -74475841 + G-rich Low_complexity Low_complexity 2 61 0 685 171 92 75 chr13 27397604 27397832 -74475337 + MER106B DNA MER1_type 5 1059 0 195 217 330 28 chr13 27397837 27397943 -74475226 + L2 LINE L2 3124 3261 -11 2366 245 62 34 chr13 27398916 27399984 -74473185 - L1ME3A LINE L1 -28 6142 5052 1139 148 6 0 chr13 27400042 27400225 -74472944 - L1MA9 LINE L1 0 6312 6129 233 297 0 0 chr13 27400227 27400301 -74472868 - L1ME3A LINE L1 -1652 4494 4421 180 340 75 19 chr13 27400515 27400674 -74472495 - L2 LINE L2 -220 3052 2885 244 262 12 48 chr13 27402290 27402374 -74470795 - MLT1K LTR MaLR -318 270 190 317 357 8 0 chr13 27402673 27402802 -74470367 + MIR SINE MIR 2 131 -131 255 61 0 0 chr13 27402804 27402837 -74470332 + (CAT)n Simple_repeat Simple_repeat 3 35 0 263 221 10 125 chr13 27404133 27404237 -74468932 - MIR3 SINE MIR -48 160 69 787 224 29 11 chr13 27404319 27404493 -74468676 - MLT1J2 LTR MaLR -8 442 266 1099 193 28 5 chr13 27404500 27404713 -74468456 + MER20 DNA MER1_type 2 219 0 438 292 245 8 chr13 27405039 27405423 -74467746 + L2 LINE L2 2249 2723 -591 639 278 96 52 chr13 27405718 27406175 -74466994 + L2 LINE L2 2837 3313 0 279 202 0 31 chr13 27406900 27407013 -74466156 + MER69 DNA AcHobo 1 166 -2360 1791 222 53 52 chr13 27407013 27407893 -74465276 + MER69 DNA AcHobo 137 2427 -99 1893 95 0 0 chr13 27408133 27408394 -74464775 - AluY SINE Alu 0 300 40 194 160 260 40 chr13 27411391 27411491 -74461678 + MIR SINE MIR 120 241 -21 350 252 19 29 chr13 27412595 27412698 -74460471 + MIR SINE MIR 100 201 -61 602 265 126 0 chr13 27412945 27413096 -74460073 + MER45A DNA AcHobo 8 177 -1 380 209 11 11 chr13 27415823 27415914 -74457255 - MLT1K LTR MaLR -3 585 495 234 185 62 15 chr13 27416171 27416236 -74456933 - MLT1K LTR MaLR -512 76 9 2318 113 0 0 chr13 27416874 27417184 -74455985 + AluSx SINE Alu 1 310 -2 2024 208 47 16 chr13 27417440 27417930 -74455239 + MLT1D LTR MaLR 1 505 0 2431 153 10 0 chr13 27418014 27418405 -74454764 - MER57A LTR ERV1 -1 402 8 394 271 31 47 chr13 27418422 27418551 -74454618 + MIR3 SINE MIR 66 192 -16 251 219 106 0 chr13 27420737 27420836 -74452333 + MIR3 SINE MIR 78 188 -20 369 0 0 0 chr13 27421995 27422036 -74451133 + (CA)n Simple_repeat Simple_repeat 1 41 0 698 283 21 13 chr13 27422082 27422319 -74450850 + MIR SINE MIR 23 261 -1 305 343 81 6 chr13 27422513 27422685 -74450484 - MIR3 SINE MIR -20 188 4 2173 129 7 0 chr13 27422748 27423058 -74450111 + AluSx SINE Alu 1 312 0 207 0 0 0 chr13 27423518 27423541 -74449628 + (A)n Simple_repeat Simple_repeat 1 23 0 2681 147 22 2 chr13 27423582 27423998 -74449171 + MSTB LTR MaLR 1 424 -2 466 200 46 23 chr13 27424044 27424174 -74448995 + L2 LINE L2 3181 3313 0 204 254 200 9 chr13 27424223 27424333 -74448836 + MIR SINE MIR 92 222 -40 2103 109 31 3 chr13 27424480 27424773 -74448396 + AluSx SINE Alu 1 301 -11 527 250 132 5 chr13 27427838 27428050 -74445119 + MIR SINE MIR 12 250 -12 1659 184 70 28 chr13 27428311 27428670 -74444499 + MLT1A2 LTR MaLR 1 374 0 205 273 0 0 chr13 27429013 27429057 -74444112 + (TATG)n Simple_repeat Simple_repeat 4 47 0 209 330 82 0 chr13 27430796 27430893 -74442276 - L2 LINE L2 0 3313 3209 1972 112 0 0 chr13 27430911 27431200 -74441969 + AluSx SINE Alu 35 323 0 585 185 9 0 chr13 27432305 27432413 -74440756 + FLAM_A SINE Alu 34 142 0 216 67 0 0 chr13 27432900 27432930 -74440239 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 897 140 0 0 chr13 27432932 27433110 -74440059 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 439 267 25 43 chr13 27433345 27433506 -74439663 + L2 LINE L2 2925 3082 -190 183 445 27 7 chr13 27433580 27433726 -74439443 + L2 LINE L2 3124 3272 0 379 71 0 0 chr13 27435536 27435592 -74437577 - L1MB2 LINE L1 -1 6170 6115 1775 168 29 0 chr13 27435593 27435908 -74437261 - L1MB2 LINE L1 -173 6010 5687 255 161 0 0 chr13 27436495 27436551 -74436618 + (CA)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr13 27437125 27437156 -74436013 + AT_rich Low_complexity Low_complexity 1 31 0 520 227 27 27 chr13 27438429 27438579 -74434590 + L1MC4 LINE L1 7473 7622 -420 * 1434 61 0 6 chr13 27438577 27438758 -74434411 - L1PA7 LINE L1 -142 6012 5833 1258 236 47 33 chr13 27438752 27439176 -74433993 + L1MC4 LINE L1 7613 8042 0 * 3431 50 0 0 chr13 27440171 27440590 -74432579 - L1PA8 LINE L1 0 6172 5754 533 42 0 0 chr13 27440590 27440662 -74432507 + L1P LINE L1 5270 5341 -831 294 259 110 52 chr13 27440703 27441012 -74432157 + L2 LINE L2 2348 2674 -640 1040 123 25 6 chr13 27441077 27441240 -74431929 - L1PA10 LINE L1 -12 6156 5991 360 347 54 77 chr13 27441476 27441825 -74431344 + L2 LINE L2 2923 3263 -9 214 270 56 11 chr13 27442380 27442469 -74430700 + L2 LINE L2 3138 3230 -42 334 323 89 22 chr13 27443510 27443753 -74429416 - MIR SINE MIR 0 262 8 820 250 207 25 chr13 27443794 27444376 -74428793 - LTR50 LTR ERVL -1 794 25 402 310 70 11 chr13 27444478 27444665 -74428504 - MIR SINE MIR -26 236 39 1046 224 80 32 chr13 27444690 27445029 -74428140 - MLT1C LTR MaLR 0 467 113 289 244 39 0 chr13 27445125 27445203 -74427966 - MLT1C LTR MaLR -379 88 8 1125 221 53 8 chr13 27447614 27447877 -74425292 + MLT1C LTR MaLR 193 467 0 2000 191 75 0 chr13 27448527 27448929 -74424240 - MSTB1 LTR MaLR 0 432 1 230 351 0 0 chr13 27448934 27449011 -74424158 + MER103 DNA DNA 36 112 -54 266 176 0 0 chr13 27450413 27450464 -74422705 - L2 LINE L2 0 3313 3263 262 254 15 0 chr13 27450585 27450652 -74422517 - MER91 DNA MER1_type -5 135 68 323 348 49 0 chr13 27450857 27451027 -74422142 - MIR SINE MIR -58 150 20 1099 177 10 19 chr13 27451046 27451255 -74421914 + MER3 DNA MER1_type 3 209 0 404 271 47 100 chr13 27451765 27452086 -74421083 + MER102b DNA MER1_type 35 338 -3 210 259 0 0 chr13 27452371 27452425 -74420744 + MIR SINE MIR 206 259 -3 198 327 59 30 chr13 27452817 27452918 -74420251 + L2 LINE L2 3150 3253 -19 22 0 0 0 chr13 27453081 27453103 -74420066 + AT_rich Low_complexity Low_complexity 1 22 0 294 298 69 55 chr13 27453108 27453397 -74419772 + L1ME LINE L1 5545 5837 -284 1802 174 0 20 chr13 27453503 27453801 -74419368 + AluJo SINE Alu 1 292 -20 1472 199 11 0 chr13 27453803 27454080 -74419089 - L1ME LINE L1 -529 5637 5358 * 1739 210 65 60 chr13 27454078 27454613 -74418556 + L1ME2 LINE L1 5639 6334 0 393 339 110 46 chr13 27454681 27455118 -74418051 + L2 LINE L2 2808 3272 0 342 331 34 29 chr13 27457126 27457301 -74415868 - L2 LINE L2 -173 3099 2924 908 210 0 6 chr13 27457805 27457981 -74415188 + MER5B DNA MER1_type 3 177 -1 1826 192 57 21 chr13 27458246 27458667 -74414502 - MER63B DNA MER1_type 0 436 1 210 224 0 0 chr13 27459773 27459822 -74413347 + (TG)n Simple_repeat Simple_repeat 2 50 0 3067 143 17 37 chr13 27460255 27460785 -74412384 - LTR27 LTR ERV1 -137 810 3 276 291 12 0 chr13 27461128 27461214 -74411955 - L2 LINE L2 -2 3270 3184 928 143 23 0 chr13 27462654 27462829 -74410340 + GA-rich Low_complexity Low_complexity 2 180 0 219 129 0 0 chr13 27462831 27462862 -74410307 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 200 86 86 0 chr13 27463140 27463175 -74409994 - MIR SINE MIR -55 153 116 1185 191 56 88 chr13 27463864 27464240 -74408929 - MLT2D LTR ERVL -48 366 3 466 287 50 36 chr13 27465178 27465496 -74407673 - MLT1I LTR MaLR -14 395 31 222 37 0 0 chr13 27466347 27466374 -74406795 + (A)n Simple_repeat Simple_repeat 1 27 0 974 257 62 54 chr13 27467707 27468155 -74405014 + LTR16A1 LTR ERVL 1 452 -5 409 318 18 12 chr13 27468481 27468651 -74404518 - MARNA DNA Mariner -41 545 375 399 303 107 11 chr13 27468922 27469100 -74404069 - L2 LINE L2 0 3313 3119 593 258 66 16 chr13 27469474 27469656 -74403513 - MIR SINE MIR -44 218 28 2911 119 21 5 chr13 27469706 27470133 -74403036 - MER57B LTR ERV1 0 434 1 690 286 70 39 chr13 27470309 27470666 -74402503 + L1ME4a LINE L1 5527 5894 -227 1897 108 63 4 chr13 27471085 27471353 -74401816 - AluSg SINE Alu -26 284 1 231 184 41 0 chr13 27472047 27472096 -74401073 + GA-rich Low_complexity Low_complexity 2 52 0 1640 221 8 21 chr13 27472342 27472717 -74400452 - MLT1A2 LTR MaLR -4 370 1 522 276 41 31 chr13 27473627 27473823 -74399346 + MLT1L LTR MaLR 418 615 0 643 237 19 0 chr13 27473948 27474104 -74399065 + MIR SINE MIR 33 191 -71 2403 75 14 0 chr13 27474272 27474564 -74398605 + AluSx SINE Alu 1 296 -16 397 230 158 54 chr13 27474749 27475084 -74398085 - L1ME4a LINE L1 -206 5915 5546 758 157 55 180 chr13 27476101 27476356 -74396813 - MER58A DNA MER1_type 0 224 2 337 235 0 78 chr13 27476801 27476903 -74396266 + MIR3 SINE MIR 69 162 -46 2282 169 86 21 chr13 27477228 27477714 -74395455 - MLT2B1 LTR ERVL 0 520 3 21 0 0 0 chr13 27478225 27478246 -74394923 + AT_rich Low_complexity Low_complexity 1 21 0 196 301 27 0 chr13 27478331 27478404 -74394765 + MIR SINE MIR 124 198 -64 396 238 36 0 chr13 27479475 27479559 -74393610 - HERV16 LTR ERVL -4909 87 1 667 292 70 23 chr13 27479581 27479874 -74393295 - LTR16A LTR ERVL -10 440 133 1136 334 76 34 chr13 27480113 27481724 -74391445 - HERV16 LTR ERVL -367 5287 3628 426 39 0 0 chr13 27482242 27482294 -74390875 + (TG)n Simple_repeat Simple_repeat 1 52 0 274 245 43 11 chr13 27482616 27482710 -74390459 - MER5A DNA MER1_type -84 105 9 2568 86 3 0 chr13 27483262 27483613 -74389556 - L1PA8 LINE L1 -1489 4657 4306 7211 63 16 0 chr13 27483615 27485098 -74388071 + L1PA8 LINE L1 4675 6172 0 184 330 39 50 chr13 27485247 27485426 -74387743 - MIR3 SINE MIR -2 206 30 421 257 140 47 chr13 27485977 27485994 -74387175 - MIR SINE MIR -16 246 232 462 230 18 9 chr13 27485994 27486107 -74387062 - MER81 DNA DNA 0 114 1 421 257 140 47 chr13 27486107 27486303 -74386866 - MIR SINE MIR -30 232 13 304 284 0 0 chr13 27486906 27486987 -74386182 - MIR SINE MIR -64 198 118 296 169 36 60 chr13 27488029 27488112 -74385057 - LTR67 LTR ERVL -5 552 472 312 318 9 9 chr13 27488501 27488618 -74384551 + MIR SINE MIR 19 134 -74 1018 150 0 0 chr13 27490600 27490753 -74382416 + FRAM SINE Alu 1 151 -25 209 288 19 19 chr13 27490844 27490934 -74382235 - MER5A DNA MER1_type 0 189 92 2657 48 0 0 chr13 27491589 27491898 -74381271 + AluY SINE Alu 1 309 -2 545 295 54 28 chr13 27492535 27492761 -74380408 + MIR SINE MIR 17 247 -15 409 282 176 25 chr13 27493176 27493659 -74379510 + L2 LINE L2 111 666 -2648 1757 229 35 53 chr13 27493660 27493733 -74379436 + MLT1D LTR MaLR 1 74 -431 2104 145 33 41 chr13 27493733 27494126 -74379043 + MLT1B LTR MaLR 1 390 0 1757 229 35 53 chr13 27494126 27494564 -74378605 + MLT1D LTR MaLR 74 503 -2 478 263 229 45 chr13 27494573 27495128 -74378041 + L2 LINE L2 670 1326 -1988 205 291 94 115 chr13 27495139 27495383 -74377786 + L2 LINE L2 3019 3257 -15 186 103 0 0 chr13 27495383 27495412 -74377757 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 190 290 81 16 chr13 27495672 27495734 -74377435 - L3b LINE CR1 -5 1578 1513 24 32 0 0 chr13 27495802 27495833 -74377336 + AT_rich Low_complexity Low_complexity 1 31 0 338 269 62 88 chr13 27496445 27496605 -74376564 - L2 LINE L2 0 3272 3117 299 241 99 43 chr13 27496825 27496966 -74376203 + MLT1J2 LTR MaLR 302 450 0 325 338 15 0 chr13 27497214 27497347 -74375822 - MER113 DNA MER1_type? -38 483 349 2283 151 88 103 chr13 27497348 27497871 -74375298 + MLT2B2 LTR ERVL 1 515 0 1210 294 38 21 chr13 27497872 27498430 -74374739 + L2 LINE L2 2750 3313 0 348 244 12 0 chr13 27498444 27498526 -74374643 - MER113 DNA MER1_type? -201 320 238 1340 189 55 32 chr13 27498535 27498915 -74374254 - LTR37A LTR ERV1 0 426 38 347 230 35 9 chr13 27498972 27499085 -74374084 - MER113 DNA MER1_type? -286 235 120 349 302 154 0 chr13 27499145 27499294 -74373875 - MER5A DNA MER1_type -9 180 9 206 232 71 0 chr13 27499388 27499444 -74373725 - L2 LINE L2 -567 2747 2688 814 282 70 4 chr13 27500128 27500321 -74372848 - L1ME1 LINE L1 -5 6161 5943 2256 104 14 0 chr13 27500321 27500618 -74372551 - AluSg SINE Alu -9 301 1 814 282 70 4 chr13 27500618 27500697 -74372472 - L1ME1 LINE L1 -223 5943 5871 183 315 27 0 chr13 27500960 27501033 -74372136 - MIR SINE MIR -67 195 121 248 244 13 39 chr13 27502202 27502280 -74370889 - MIR SINE MIR -150 112 37 570 265 24 6 chr13 27503297 27503467 -74369702 - MIR SINE MIR -7 255 83 21 0 0 0 chr13 27503577 27503598 -74369571 + AT_rich Low_complexity Low_complexity 1 21 0 1043 274 56 11 chr13 27503598 27503955 -74369214 - L2 LINE L2 -8 3305 2933 356 330 182 14 chr13 27504409 27504618 -74368551 + HAL1 LINE L1 2 245 -2262 2009 98 9 90 chr13 27504722 27505244 -74367925 - LTR12 LTR ERV1 -98 624 1 577 254 161 38 chr13 27505283 27505680 -74367489 + HAL1 LINE L1 910 1355 -1152 189 0 0 0 chr13 27506295 27506316 -74366853 + (A)n Simple_repeat Simple_repeat 1 21 0 250 239 85 90 chr13 27506401 27506589 -74366580 + Tigger1 DNA MER2_type 815 1001 -1417 7507 156 109 62 chr13 27507078 27508754 -74364415 + MER52A LTR ERV1 1 1755 0 253 313 124 51 chr13 27509746 27509963 -74363206 - MIR SINE MIR -10 252 20 189 189 27 0 chr13 27509974 27510011 -74363158 - L2 LINE L2 -15 3298 3261 1627 169 45 13 chr13 27512537 27512845 -74360324 + MLT1F LTR MaLR 223 540 -2 487 234 139 19 chr13 27514100 27514258 -74358911 - MER5B DNA MER1_type 0 178 2 2267 104 0 0 chr13 27514379 27514695 -74358474 + AluSq SINE Alu 1 316 0 192 172 86 52 chr13 27515116 27515174 -74357995 - MER5A DNA MER1_type -5 184 125 1933 171 0 3 chr13 27515175 27515479 -74357690 + AluJb SINE Alu 1 303 -9 208 340 0 0 chr13 27515483 27515536 -74357633 + MER5A DNA MER1_type 65 117 -72 2268 108 3 0 chr13 27515569 27515876 -74357293 + AluSx SINE Alu 1 308 -4 3155 137 19 9 chr13 27515886 27516679 -74356490 + L1PB3 LINE L1 4943 5743 -411 237 65 0 0 chr13 27516680 27516711 -74356458 + (CA)n Simple_repeat Simple_repeat 2 32 0 2317 115 6 3 chr13 27516726 27517064 -74356105 + L1PB3 LINE L1 5807 6145 -9 407 217 373 6 chr13 27517084 27517245 -74355924 - MIR SINE MIR -8 254 35 22 70 0 0 chr13 27519908 27519951 -74353218 + AT_rich Low_complexity Low_complexity 1 43 0 1578 150 113 13 chr13 27520469 27520899 -74352270 + MER44D DNA MER2_type 1 569 -36 206 130 65 43 chr13 27521237 27521283 -74351886 - L2 LINE L2 0 3272 3226 1112 174 57 28 chr13 27521317 27521529 -74351640 + AluJb SINE Alu 20 237 -75 979 158 45 50 chr13 27521637 27521839 -74351330 - THE1B LTR MaLR 0 364 164 36 23 0 0 chr13 27521885 27521928 -74351241 + AT_rich Low_complexity Low_complexity 1 43 0 1963 127 0 0 chr13 27521977 27522253 -74350916 + AluJb SINE Alu 1 276 -36 194 0 39 0 chr13 27522263 27522289 -74350880 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chr13 27522370 27522391 -74350778 + (TG)n Simple_repeat Simple_repeat 2 22 0 459 258 37 18 chr13 27523400 27523563 -74349606 + GA-rich Low_complexity Low_complexity 3 168 0 345 240 181 76 chr13 27524051 27524602 -74348567 + L1M4 LINE L1 2931 3539 -2607 2052 146 0 3 chr13 27525059 27525360 -74347809 - AluSx SINE Alu -12 300 1 2412 92 0 6 chr13 27525604 27525918 -74347251 - AluSx SINE Alu 0 312 1 429 268 140 37 chr13 27526166 27526981 -74346188 - L1M4 LINE L1 -3118 3028 2130 273 322 92 30 chr13 27528063 27528256 -74344913 - MIR SINE MIR -8 254 41 2299 52 16 39 chr13 27529444 27529752 -74343417 - AluY SINE Alu -10 301 1 350 321 33 10 chr13 27530108 27530285 -74342884 + MIR SINE MIR 5 261 -1 362 259 111 58 chr13 27530465 27530574 -74342595 + MIR SINE MIR 15 117 -145 1978 126 0 14 chr13 27530574 27530879 -74342290 - AluSx SINE Alu 0 301 1 362 259 111 58 chr13 27530879 27531000 -74342169 + MIR SINE MIR 117 259 -3 21 57 0 0 chr13 27531050 27531085 -74342084 + AT_rich Low_complexity Low_complexity 1 35 0 226 258 32 16 chr13 27531508 27531570 -74341599 + L2 LINE L2 3209 3271 -1 379 293 31 63 chr13 27531826 27532144 -74341025 + L2 LINE L2 1853 2160 -1154 1377 81 99 14 chr13 27533691 27533902 -74339267 + MER30 DNA MER1_type 2 230 0 348 152 0 0 chr13 27534171 27534237 -74338932 + (CA)n Simple_repeat Simple_repeat 2 67 0 563 267 80 37 chr13 27534626 27534813 -74338356 + MIR SINE MIR 20 214 -48 180 68 45 23 chr13 27535043 27535087 -74338082 + (TTA)n Simple_repeat Simple_repeat 2 46 0 2392 76 0 3 chr13 27535191 27535493 -74337676 + AluSg SINE Alu 1 301 -9 203 341 67 61 chr13 27535513 27535677 -74337492 - L2 LINE L2 -195 3077 2913 22 0 0 0 chr13 27535677 27535699 -74337470 + AT_rich Low_complexity Low_complexity 1 22 0 1118 253 201 33 chr13 27535861 27535973 -74337196 + L1ME3A LINE L1 4006 4098 -2048 1187 192 67 35 chr13 27535973 27536286 -74336883 + MER33 DNA MER1_type 1 323 -1 1118 253 201 33 chr13 27536286 27537306 -74335863 + L1ME3A LINE L1 4098 5329 -817 828 167 0 0 chr13 27537306 27537432 -74335737 + FLAM_C SINE Alu 1 126 -17 1132 210 35 51 chr13 27537442 27537813 -74335356 + L1ME3A LINE L1 5298 5662 -508 1033 273 90 12 chr13 27537819 27538229 -74334940 + L1ME3A LINE L1 5716 6157 -13 365 256 23 87 chr13 27538233 27538378 -74334791 + L1ME3A LINE L1 4981 5134 -1012 2263 84 3 24 chr13 27538378 27538676 -74334493 + AluSp SINE Alu 1 292 -21 365 256 23 87 chr13 27538676 27538698 -74334471 + L1ME3A LINE L1 5134 5156 -990 210 71 0 0 chr13 27538698 27538726 -74334443 + (TA)n Simple_repeat Simple_repeat 2 29 0 365 256 23 87 chr13 27538726 27538776 -74334393 + L1ME3A LINE L1 5156 5185 -961 1159 122 0 6 chr13 27538777 27538941 -74334228 + AluSg/x SINE Alu 132 294 -18 2472 74 0 3 chr13 27539034 27539344 -74333825 + AluY SINE Alu 1 309 -2 698 299 131 24 chr13 27539349 27539871 -74333298 + L1ME3A LINE L1 5257 5859 -311 2086 134 67 3 chr13 27539871 27540215 -74332954 - MER47A DNA MER2_type 0 366 1 698 299 131 24 chr13 27540215 27540320 -74332849 + L1ME3A LINE L1 5859 5951 -219 3886 236 83 59 chr13 27540776 27541711 -74331458 + L1MB5 LINE L1 2 913 -5733 1694 174 0 64 chr13 27541711 27541856 -74331313 + AluJo SINE Alu 1 154 -158 2394 103 0 0 chr13 27541856 27542168 -74331001 + AluSx SINE Alu 1 312 0 1694 174 0 64 chr13 27542168 27542350 -74330819 + AluJo SINE Alu 154 307 -5 3886 236 83 59 chr13 27542350 27543345 -74329824 + L1MB5 LINE L1 913 2158 -4488 3862 174 77 40 chr13 27543427 27544034 -74329135 + L1MB5 LINE L1 5293 5876 -796 1174 147 104 127 chr13 27544034 27544168 -74329001 + AluJo SINE Alu 1 137 -165 2290 86 0 7 chr13 27544168 27544460 -74328709 + AluSq SINE Alu 1 290 -23 1174 147 104 127 chr13 27544460 27544624 -74328545 + AluJo SINE Alu 137 292 -10 3862 174 77 40 chr13 27544624 27545325 -74327844 + L1MB5 LINE L1 5876 6671 -1 389 381 42 32 chr13 27545381 27545788 -74327381 + L2 LINE L2 2456 2866 -448 1118 178 5 5 chr13 27545894 27546091 -74327078 + AluJb SINE Alu 112 308 -4 34 24 0 0 chr13 27547153 27547194 -74325975 + AT_rich Low_complexity Low_complexity 1 41 0 2369 93 0 3 chr13 27547572 27547884 -74325285 + AluSq SINE Alu 1 311 -2 2019 128 0 3 chr13 27548460 27548742 -74324427 - AluJo SINE Alu -20 292 12 669 249 26 5 chr13 27550193 27550382 -74322787 - MER105 DNA DNA -9 195 3 513 180 85 138 chr13 27550388 27550577 -74322592 - MIR SINE MIR -82 180 2 30 27 0 0 chr13 27551639 27551676 -74321493 + AT_rich Low_complexity Low_complexity 1 37 0 1941 131 35 0 chr13 27552100 27552390 -74320779 + AluJb SINE Alu 5 304 -8 714 186 8 0 chr13 27552912 27553036 -74320133 + FLAM_C SINE Alu 1 125 -8 1559 179 39 4 chr13 27553049 27553328 -74319841 + AluJb SINE Alu 5 293 -19 268 333 28 9 chr13 27553504 27553612 -74319557 - L2 LINE L2 -5 3308 3199 701 235 150 15 chr13 27553666 27553866 -74319303 - MIR SINE MIR -33 229 3 2076 104 46 3 chr13 27554089 27554396 -74318773 + L1PA11 LINE L1 5834 6153 -21 807 298 42 39 chr13 27556263 27556619 -74316550 + L2 LINE L2 2604 2960 -354 642 51 0 226 chr13 27557048 27557122 -74316047 + L1MB3 LINE L1 6066 6097 -86 2310 68 0 4 chr13 27557122 27557403 -74315766 + AluSx SINE Alu 1 280 -32 642 51 0 226 chr13 27557403 27557465 -74315704 + L1MB3 LINE L1 6097 6171 -12 589 236 168 82 chr13 27557734 27557868 -74315301 + L1ME4a LINE L1 5469 5590 -531 2146 91 10 36 chr13 27557868 27558175 -74314994 + AluSp SINE Alu 2 300 -13 589 236 168 82 chr13 27558175 27558352 -74314817 + L1ME4a LINE L1 5590 5750 -371 1867 135 11 11 chr13 27558352 27558660 -74314509 - AluSx SINE Alu 0 308 1 589 236 168 82 chr13 27558660 27558761 -74314408 + L1ME4a LINE L1 5750 5920 -201 1838 134 21 14 chr13 27558777 27559068 -74314101 + AluJb SINE Alu 9 301 -11 288 0 0 0 chr13 27559385 27559417 -74313752 + (CA)n Simple_repeat Simple_repeat 2 33 0 426 340 93 50 chr13 27559739 27559923 -74313246 + L2 LINE L2 2149 2324 -948 2584 58 0 0 chr13 27559923 27560234 -74312935 - AluY SINE Alu 0 311 1 426 340 93 50 chr13 27560234 27560423 -74312746 + L2 LINE L2 2324 2503 -769 2335 79 24 0 chr13 27560423 27560713 -74312456 - AluSc SINE Alu -12 297 1 426 340 93 50 chr13 27560713 27561016 -74312153 + L2 LINE L2 2503 3186 -86 272 283 93 66 chr13 27561896 27562274 -74310895 + L1MC4a LINE L1 4885 5272 -874 1788 258 40 32 chr13 27562292 27562343 -74310826 + L1MC4a LINE L1 5331 5380 -2428 2037 155 0 0 chr13 27562343 27562652 -74310517 + AluSx SINE Alu 1 309 -3 1788 258 40 32 chr13 27562652 27563193 -74309976 + L1MC4a LINE L1 5380 5928 -1880 1998 138 14 0 chr13 27563211 27563502 -74309667 - AluSx SINE Alu -17 295 1 243 0 0 0 chr13 27565099 27565126 -74308043 + (CA)n Simple_repeat Simple_repeat 2 28 0 937 143 0 0 chr13 27565328 27565461 -74307708 + AluSq/x SINE Alu 1 133 -180 198 103 0 0 chr13 27565491 27565520 -74307649 + (TA)n Simple_repeat Simple_repeat 2 30 0 261 111 0 0 chr13 27565522 27565567 -74307602 + LTR66 LTR ERVL 394 438 -172 288 170 0 0 chr13 27565570 27565623 -74307546 + (TA)n Simple_repeat Simple_repeat 2 54 0 1730 150 37 3 chr13 27565623 27565917 -74307252 - AluJb SINE Alu -8 304 1 262 282 76 53 chr13 27566422 27566553 -74306616 + Charlie7 DNA MER1_type 59 192 -2420 811 335 180 38 chr13 27567258 27568451 -74304718 - L2 LINE L2 -405 2909 1547 185 263 0 0 chr13 27568665 27568703 -74304466 + MIR SINE MIR 217 254 -8 * 668 240 106 6 chr13 27568669 27568848 -74304321 - MIR SINE MIR -35 227 31 627 315 152 6 chr13 27569679 27570299 -74302870 - L2 LINE L2 -15 3298 2543 3022 211 94 8 chr13 27570315 27571409 -74301760 + L1MC2 LINE L1 4846 6028 -316 304 330 139 15 chr13 27571412 27571685 -74301484 - L2 LINE L2 -1392 1922 1616 6268 214 99 87 chr13 27572012 27572308 -74300861 + L1MCb LINE L1 19 310 -6254 1998 119 37 7 chr13 27572308 27572602 -74300567 - AluSq SINE Alu -10 303 1 6268 214 99 87 chr13 27572602 27573084 -74300085 + L1MCb LINE L1 310 785 -5779 1738 156 3 10 chr13 27573084 27573372 -74299797 + AluJo SINE Alu 16 301 -11 6268 214 99 87 chr13 27573372 27573583 -74299586 + L1MCb LINE L1 785 992 -5572 1615 183 3 7 chr13 27573583 27573896 -74299273 + AluJb SINE Alu 1 312 0 6268 214 99 87 chr13 27573896 27574353 -74298816 + L1MCb LINE L1 992 1442 -5122 277 191 176 0 chr13 27574353 27574421 -74298748 - Tigger5 DNA MER2_type 0 2323 2244 * 460 140 514 0 chr13 27574418 27574525 -74298644 - Tigger5 DNA MER2_type -2129 194 33 * 6268 214 99 87 chr13 27574421 27577472 -74295697 + L1MCb LINE L1 1442 4682 -1882 1897 109 7 25 chr13 27577579 27577863 -74295306 + AluSx SINE Alu 20 298 -14 2625 35 0 13 chr13 27577866 27578179 -74294990 + AluY SINE Alu 1 309 -2 283 333 0 0 chr13 27578190 27578265 -74294904 - MER91A DNA MER1_type -121 75 1 186 281 0 18 chr13 27578363 27578420 -74294749 - L2 LINE L2 -2583 731 676 1016 228 54 131 chr13 27578420 27579068 -74294101 - MLT1G LTR MaLR 0 590 13 719 152 0 32 chr13 27579169 27579294 -74293875 + L1PB3 LINE L1 6034 6154 0 2387 128 67 78 chr13 27579394 27579687 -74293482 + MSTB2 LTR MaLR 1 289 -168 2209 93 10 3 chr13 27579687 27579977 -74293192 - AluSg SINE Alu -18 292 1 2387 128 67 78 chr13 27579977 27580145 -74293024 + MSTB2 LTR MaLR 289 457 0 1886 281 13 2 chr13 27580228 27580687 -74292482 - LTR16B LTR ERVL 0 464 1 339 259 111 69 chr13 27580771 27581175 -74291994 - MLT1L LTR MaLR 0 615 168 231 163 23 0 chr13 27581260 27581303 -74291866 + MER65B LTR ERV1 1 44 -487 207 0 0 0 chr13 27581303 27581326 -74291843 + (A)n Simple_repeat Simple_repeat 1 23 0 2311 115 0 0 chr13 27581326 27581639 -74291530 + AluSq SINE Alu 1 313 0 837 129 58 0 chr13 27581646 27581785 -74291384 + MER65B LTR ERV1 40 186 -345 293 136 0 0 chr13 27581803 27581847 -74291322 + LTR54 LTR ERV1 399 442 -68 2000 138 14 0 chr13 27581852 27582149 -74291020 - AluSg SINE Alu -9 301 1 1848 175 0 13 chr13 27582149 27582452 -74290717 - AluJo SINE Alu -13 299 1 1391 156 62 0 chr13 27582504 27582760 -74290409 + MER65A LTR ERV1 174 445 0 1758 156 3 27 chr13 27582831 27583126 -74290043 + AluSx SINE Alu 1 288 -24 846 153 0 15 chr13 27583207 27583338 -74289831 - FLAM_C SINE Alu -4 129 1 2015 99 31 20 chr13 27583501 27583794 -74289375 + AluSx SINE Alu 1 296 -16 297 318 112 0 chr13 27584702 27584809 -74288360 + MIR SINE MIR 23 141 -67 436 230 127 70 chr13 27584832 27585163 -74288006 + L1M4 LINE L1 2865 3214 -2932 258 281 45 0 chr13 27585185 27585274 -74287895 + L1M4 LINE L1 3686 3778 -2368 1967 140 0 4 chr13 27585294 27585572 -74287597 + AluJb SINE Alu 9 285 -27 833 133 0 0 chr13 27585630 27585743 -74287426 - FRAM SINE Alu -70 106 1 1234 216 65 129 chr13 27585843 27585957 -74287212 + L1MC4 LINE L1 7411 7531 -511 2284 99 10 0 chr13 27585957 27586251 -74286918 + AluSg SINE Alu 1 297 -13 1234 216 65 129 chr13 27586251 27586457 -74286712 + L1MC4 LINE L1 7531 7749 -293 559 168 14 154 chr13 27586457 27586600 -74286569 + FLAM_C SINE Alu 3 125 -8 1234 216 65 129 chr13 27586600 27586813 -74286356 + L1MC4 LINE L1 7749 7900 -142 264 100 0 0 chr13 27586813 27586853 -74286316 + (TG)n Simple_repeat Simple_repeat 2 41 0 1234 216 65 129 chr13 27586853 27586960 -74286209 + L1MC4 LINE L1 7900 8012 -30 1173 141 40 5 chr13 27587078 27587276 -74285893 + AluSx SINE Alu 1 205 -107 2065 135 3 3 chr13 27587362 27587673 -74285496 + AluSq SINE Alu 1 311 -2 820 201 85 0 chr13 27587889 27588078 -74285091 + L1MB7 LINE L1 5921 6125 -59 1049 214 86 62 chr13 27588083 27588467 -74284702 + LTR1B LTR ERV1 1 393 -433 707 121 0 43 chr13 27589027 27589143 -74284026 - FLAM_A SINE Alu -8 134 24 2151 120 13 0 chr13 27589291 27589599 -74283570 - AluSx SINE Alu 0 312 1 6180 90 46 0 chr13 27591129 27591919 -74281250 + LTR12 LTR ERV1 1 826 0 836 127 0 8 chr13 27591919 27592045 -74281124 + LTR12 LTR ERV1 590 714 0 640 200 193 0 chr13 27592187 27592327 -74280842 - AluSg/x SINE Alu -9 301 135 2145 135 3 0 chr13 27592340 27592651 -74280518 - AluSq SINE Alu -1 312 1 366 203 0 0 chr13 27593105 27593179 -74279990 - MER52A LTR ERV1 0 1755 1682 * 3785 212 56 71 chr13 27593151 27594329 -74278840 - MER52A LTR ERV1 -125 1196 56 206 141 0 94 chr13 27594501 27594565 -74278604 + (TGGGGG)n Simple_repeat Simple_repeat 3 60 0 228 288 15 0 chr13 27594580 27594646 -74278523 - MER52A LTR ERV1 -1688 67 1 1407 137 26 9 chr13 27594793 27595049 -74278120 + AluSx SINE Alu 52 311 0 2437 74 0 0 chr13 27595068 27595377 -74277792 + AluY SINE Alu 2 310 -1 1691 135 52 0 chr13 27595385 27595652 -74277517 + AluJb SINE Alu 1 281 -31 32 0 0 0 chr13 27596594 27596626 -74276543 + AT_rich Low_complexity Low_complexity 1 32 0 195 100 0 0 chr13 27596945 27596975 -74276194 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr13 27596995 27597017 -74276152 + (A)n Simple_repeat Simple_repeat 1 22 0 1635 171 92 43 chr13 27597275 27597602 -74275567 - MER61A LTR ERV1 0 343 1 216 135 0 0 chr13 27597894 27597931 -74275238 + (CATA)n Simple_repeat Simple_repeat 3 39 0 1878 166 13 3 chr13 27597948 27598255 -74274914 + AluSx SINE Alu 1 310 -2 3409 124 81 48 chr13 27598264 27598854 -74274315 + MER4B LTR ERV1 1 610 0 696 203 0 0 chr13 27598855 27598973 -74274196 - FLAM_C SINE Alu -15 118 1 2171 123 0 0 chr13 27599063 27599355 -74273814 - AluSx SINE Alu -20 292 1 2022 118 0 0 chr13 27599856 27600128 -74273041 + AluSg SINE Alu 32 303 -7 533 213 56 0 chr13 27600128 27600236 -74272933 - MLT1D LTR MaLR -389 116 3 1857 139 0 43 chr13 27601726 27602029 -74271140 - AluJb SINE Alu -22 290 1 25 51 0 0 chr13 27602122 27602161 -74271008 + AT_rich Low_complexity Low_complexity 1 39 0 514 332 78 5 chr13 27602599 27602804 -74270365 + MIR SINE MIR 38 257 -5 24 0 0 0 chr13 27602841 27602865 -74270304 + AT_rich Low_complexity Low_complexity 1 24 0 342 247 134 0 chr13 27603231 27603328 -74269841 + MIR SINE MIR 88 197 -65 2428 84 0 6 chr13 27603903 27604214 -74268955 - AluSp SINE Alu -3 310 2 2738 29 0 0 chr13 27604288 27604595 -74268574 - AluY SINE Alu -4 307 1 1897 115 0 4 chr13 27604600 27604869 -74268300 - AluSx SINE Alu -11 301 34 2242 103 10 0 chr13 27605222 27605523 -74267646 + AluSx SINE Alu 1 304 -8 2401 91 0 0 chr13 27605839 27606147 -74267022 - AluY SINE Alu -3 308 1 216 0 0 0 chr13 27606544 27606568 -74266601 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 321 26 0 0 chr13 27606978 27607016 -74266153 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2394 76 0 7 chr13 27608340 27608641 -74264528 - AluY SINE Alu -12 299 1 262 111 111 0 chr13 27608645 27608690 -74264479 - MSTC LTR MaLR -378 50 1 5690 240 82 67 chr13 27608698 27610396 -74262773 - MSTD-int LTR MaLR -9 1726 2 1798 192 72 47 chr13 27610398 27610743 -74262426 - MSTD LTR MaLR 0 396 38 1885 143 4 0 chr13 27610743 27611054 -74262115 + AluSg SINE Alu 1 312 0 1798 192 72 47 chr13 27611054 27611093 -74262076 - MSTD LTR MaLR -358 38 1 2025 156 3 3 chr13 27611173 27611480 -74261689 + AluJb SINE Alu 1 307 -5 658 125 19 29 chr13 27611482 27611586 -74261583 + U13 snRNA snRNA 1 103 -1 1293 171 89 26 chr13 27611739 27611827 -74261342 - MSTA LTR MaLR -140 288 207 2465 46 20 7 chr13 27611827 27612129 -74261040 - AluY SINE Alu -5 306 1 1293 171 89 26 chr13 27612129 27612309 -74260860 - MSTA LTR MaLR -221 207 3 1031 293 114 13 chr13 27612332 27612728 -74260441 - HAL1 LINE L1 -2069 438 3 1574 168 0 11 chr13 27613127 27613401 -74259768 + AluSx SINE Alu 42 312 0 2584 148 4 60 chr13 27613458 27613937 -74259232 - MLT2C2 LTR ERVL -2 462 11 2599 228 88 139 chr13 27613949 27614796 -74258373 + HAL1 LINE L1 718 1607 -900 832 120 0 93 chr13 27614796 27614946 -74258223 + FLAM_C SINE Alu 8 143 0 2599 228 88 139 chr13 27614946 27615094 -74258075 + HAL1 LINE L1 1607 1761 -746 2344 110 0 3 chr13 27615094 27615403 -74257766 + AluSq SINE Alu 1 308 -5 2599 228 88 139 chr13 27615403 27615646 -74257523 + HAL1 LINE L1 1761 2015 -492 2405 72 23 0 chr13 27615646 27615952 -74257217 + AluSp SINE Alu 1 313 0 2599 228 88 139 chr13 27615952 27616100 -74257069 + HAL1 LINE L1 2015 2169 -338 1843 147 13 33 chr13 27616100 27616400 -74256769 - AluJo SINE Alu -18 294 1 2599 228 88 139 chr13 27616400 27616605 -74256564 + HAL1 LINE L1 2169 2360 -147 2143 129 0 3 chr13 27616605 27616915 -74256254 - AluSx SINE Alu -3 309 1 2599 228 88 139 chr13 27616915 27617056 -74256113 + HAL1 LINE L1 2360 2507 0 217 260 81 116 chr13 27617141 27617314 -74255855 + MIR SINE MIR 75 241 -21 940 160 0 0 chr13 27619249 27619380 -74253789 + FLAM_C SINE Alu 2 132 -1 2447 74 0 7 chr13 27620660 27620958 -74252211 - AluSp SINE Alu -17 296 1 33 80 0 0 chr13 27620962 27621037 -74252132 + AT_rich Low_complexity Low_complexity 1 75 0 2264 121 0 0 chr13 27621105 27621403 -74251766 - AluSx SINE Alu -14 298 1 26 50 0 0 chr13 27621423 27621463 -74251706 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 27621900 27621921 -74251248 + AT_rich Low_complexity Low_complexity 1 21 0 2182 114 0 3 chr13 27621981 27622278 -74250891 + AluSx SINE Alu 1 296 -16 429 193 158 9 chr13 27622463 27622577 -74250592 + MLT1L LTR MaLR 142 272 -343 2199 95 3 7 chr13 27622786 27623099 -74250070 - AluSp SINE Alu 0 312 1 1202 155 9 161 chr13 27623243 27623414 -74249755 + AluJo SINE Alu 2 95 -207 1943 164 3 10 chr13 27623414 27623726 -74249443 + AluSx SINE Alu 1 310 -2 1202 155 9 161 chr13 27623726 27623902 -74249267 + AluJo SINE Alu 95 296 -6 2236 121 3 0 chr13 27623934 27624240 -74248929 + AluSq SINE Alu 1 307 -6 2210 113 7 3 chr13 27624450 27624752 -74248417 + AluSx SINE Alu 1 303 -9 1730 173 0 33 chr13 27624829 27625135 -74248034 - AluJo SINE Alu -16 296 1 2089 125 4 0 chr13 27625239 27625519 -74247650 + AluSg SINE Alu 1 281 -29 2419 84 0 10 chr13 27626082 27626391 -74246778 - AluSp SINE Alu -7 306 1 1277 242 104 103 chr13 27626418 27626712 -74246457 - L1MEc LINE L1 -3987 2409 2117 626 268 0 0 chr13 27626712 27626839 -74246330 + FLAM_A SINE Alu 1 127 -6 1277 242 104 103 chr13 27626839 27626932 -74246237 - L1MEc LINE L1 -4279 2117 2026 1920 174 3 0 chr13 27626932 27627237 -74245932 + AluJb SINE Alu 1 306 -6 1739 178 0 17 chr13 27627242 27627540 -74245629 - AluJo SINE Alu -19 293 1 1277 242 104 103 chr13 27627540 27627943 -74245226 - L1MEc LINE L1 -4373 2023 1622 293 176 0 0 chr13 27627943 27627994 -74245175 - AluSq SINE Alu 0 300 250 1675 101 0 0 chr13 27627994 27628201 -74244968 - AluSq SINE Alu -106 207 1 2198 141 0 0 chr13 27628209 27628521 -74244648 - AluSx SINE Alu 0 312 1 1277 242 104 103 chr13 27628521 27628724 -74244445 - L1MEc LINE L1 -4780 1616 1415 2062 164 0 0 chr13 27628724 27629034 -74244135 - AluSq SINE Alu -3 310 1 1277 242 104 103 chr13 27629034 27629349 -74243820 - L1MEc LINE L1 -4981 1415 1030 2084 137 0 0 chr13 27629349 27629641 -74243528 - AluSx SINE Alu -20 292 1 294 194 0 0 chr13 27629746 27629818 -74243351 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 24 0 0 0 chr13 27629859 27629883 -74243286 + AT_rich Low_complexity Low_complexity 1 24 0 315 268 65 59 chr13 27629883 27630036 -74243133 + L2 LINE L2 3159 3312 -1 1259 280 93 23 chr13 27630410 27630885 -74242284 - MLT1J LTR MaLR -3 508 1 399 280 56 16 chr13 27631337 27631462 -74241707 + L2 LINE L2 3134 3263 -9 504 303 51 67 chr13 27631475 27631544 -74241625 - MIR SINE MIR -10 252 183 1598 199 0 0 chr13 27631544 27631835 -74241334 - AluJb SINE Alu -21 291 1 504 303 51 67 chr13 27631835 27632019 -74241150 - MIR SINE MIR -79 183 3 807 174 0 35 chr13 27632402 27632546 -74240623 - FLAM_C SINE Alu -4 139 1 4413 75 16 0 chr13 27633275 27633836 -74239333 + L1PA14 LINE L1 5592 6161 0 1480 142 97 22 chr13 27634291 27634559 -74238610 - AluJo SINE Alu -16 296 9 2558 57 0 0 chr13 27635641 27635939 -74237230 + AluY SINE Alu 1 298 -13 249 182 0 0 chr13 27636220 27636275 -74236894 + (CA)n Simple_repeat Simple_repeat 2 56 0 283 25 100 0 chr13 27636365 27636405 -74236764 - AluSg SINE Alu -6 295 252 1229 84 7 0 chr13 27636405 27636560 -74236609 - AluSg SINE Alu -154 156 1 721 183 43 9 chr13 27636568 27636683 -74236486 - FLAM_C SINE Alu -19 124 6 228 35 0 0 chr13 27636746 27636775 -74236394 + (TC)n Simple_repeat Simple_repeat 2 30 0 1996 104 26 23 chr13 27636790 27637099 -74236070 - AluSg SINE Alu 0 310 1 24 77 0 0 chr13 27637173 27637225 -74235944 + GC_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr13 27637280 27637312 -74235857 + GC_rich Low_complexity Low_complexity 1 32 0 2673 192 96 18 chr13 27637628 27638741 -74234428 + L1MC2 LINE L1 4437 5631 -713 1445 152 92 20 chr13 27638746 27639049 -74234120 + L1MC2 LINE L1 6009 6333 -11 339 332 98 10 chr13 27639141 27639346 -74233823 + MIR SINE MIR 40 262 0 378 260 139 90 chr13 27640106 27640239 -74232930 + L3 LINE CR1 1003 1128 -449 2295 69 3 3 chr13 27640239 27640529 -74232640 - AluY SINE Alu -21 290 1 378 260 139 90 chr13 27640529 27640718 -74232451 + L3 LINE CR1 1128 1341 -236 1975 141 13 10 chr13 27640935 27641239 -74231930 + AluSx SINE Alu 1 305 -7 1745 126 4 4 chr13 27641286 27641540 -74231629 + AluSx SINE Alu 29 282 -30 198 0 0 0 chr13 27641543 27641565 -74231604 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1542 170 85 7 chr13 27641722 27642004 -74231165 + AluJb SINE Alu 1 304 -8 630 196 233 0 chr13 27642005 27642138 -74231031 + AluJo/FRAM SINE Alu 139 302 0 215 31 31 0 chr13 27643373 27643405 -74229764 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 336 24 0 0 chr13 27644683 27644724 -74228445 + (A)n Simple_repeat Simple_repeat 1 41 0 2374 91 7 3 chr13 27645123 27645430 -74227739 - AluSp SINE Alu -5 308 1 797 174 8 0 chr13 27645497 27645629 -74227540 + MER3 DNA MER1_type 1 133 -76 1332 192 11 11 chr13 27645632 27645893 -74227276 - AluJo SINE Alu -11 301 41 1764 159 0 54 chr13 27645898 27646213 -74226956 - AluSx SINE Alu -14 298 1 233 167 0 0 chr13 27646213 27646255 -74226914 + MER3 DNA MER1_type 153 194 -15 287 330 29 0 chr13 27646940 27647043 -74226126 + MIR SINE MIR 106 211 -51 866 193 0 0 chr13 27647417 27647567 -74225602 - AluJb SINE Alu -26 286 137 2179 119 10 0 chr13 27647585 27647888 -74225281 - AluSx SINE Alu 0 312 7 609 271 70 80 chr13 27647914 27648152 -74225017 - MLT1L LTR MaLR -81 534 295 234 0 0 0 chr13 27648152 27648178 -74224991 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1901 96 61 0 chr13 27648178 27648439 -74224730 - AluSx SINE Alu -32 280 4 1996 119 0 34 chr13 27648445 27648771 -74224398 - AluSx SINE Alu 0 316 1 609 271 70 80 chr13 27648771 27648921 -74224248 - MLT1L LTR MaLR -324 291 141 2161 113 7 13 chr13 27650151 27650453 -74222716 + AluSx SINE Alu 1 300 -12 2202 116 0 0 chr13 27651457 27651749 -74221420 + AluSq SINE Alu 1 292 -21 1590 157 75 20 chr13 27652058 27652352 -74220817 - AluJo SINE Alu -2 310 1 281 202 53 32 chr13 27652389 27652483 -74220686 + MER34 LTR ERV1 435 530 -12 566 229 114 0 chr13 27652494 27652625 -74220544 - MIR SINE MIR -64 198 53 827 145 0 23 chr13 27652752 27652883 -74220286 - AluJb SINE Alu -101 211 84 2121 121 0 0 chr13 27653273 27653596 -74219573 - AluSx SINE Alu 0 323 1 23 0 0 0 chr13 27653634 27653657 -74219512 + AT_rich Low_complexity Low_complexity 1 23 0 750 243 21 46 chr13 27655715 27655954 -74217215 + LTR16B LTR ERVL 232 464 0 442 313 6 45 chr13 27656111 27656253 -74216916 + MIR SINE MIR 33 168 -94 1829 129 42 14 chr13 27656253 27656539 -74216630 + AluJo SINE Alu 5 298 -14 442 313 6 45 chr13 27656539 27656575 -74216594 + MIR SINE MIR 168 204 -58 200 272 0 39 chr13 27656940 27657043 -74216126 + C-rich Low_complexity Low_complexity 4 102 0 23 0 0 0 chr13 27657522 27657545 -74215624 + GC_rich Low_complexity Low_complexity 1 23 0 23 86 0 0 chr13 27657607 27657665 -74215504 + GC_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr13 27657788 27657811 -74215358 + GC_rich Low_complexity Low_complexity 1 23 0 207 297 0 0 chr13 27658946 27659010 -74214159 + (CCA)n Simple_repeat Simple_repeat 2 65 0 234 150 0 0 chr13 27659783 27659823 -74213346 + (CAA)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr13 27663033 27663056 -74210113 + AT_rich Low_complexity Low_complexity 1 23 0 263 282 77 13 chr13 27663170 27663248 -74209921 + L2 LINE L2 3100 3182 -90 2030 132 0 3 chr13 27663876 27664179 -74208990 + AluJb SINE Alu 1 302 -10 258 339 83 44 chr13 27664305 27664485 -74208684 + L2 LINE L2 2992 3178 -94 204 289 31 72 chr13 27664712 27664809 -74208360 + L3 LINE CR1 1239 1331 -246 515 246 59 27 chr13 27664855 27665042 -74208127 - HAL1 LINE L1 -5 2502 2310 732 282 74 9 chr13 27665050 27665266 -74207903 + MIR SINE MIR 3 232 -30 528 208 26 104 chr13 27665540 27665732 -74207437 - HAL1 LINE L1 -1551 956 780 790 178 0 0 chr13 27665732 27665850 -74207319 + FLAM_C SINE Alu 2 119 -24 28 0 0 0 chr13 27665850 27665878 -74207291 + AT_rich Low_complexity Low_complexity 1 28 0 256 217 0 0 chr13 27665886 27665932 -74207237 - HAL1 LINE L1 -1727 780 735 * 2699 249 123 55 chr13 27665928 27667738 -74205431 - HAL1 LINE L1 -453 2054 23 264 302 63 70 chr13 27667957 27668143 -74205026 - MIR SINE MIR -61 201 16 22 0 0 0 chr13 27668431 27668453 -74204716 + AT_rich Low_complexity Low_complexity 1 22 0 664 139 37 19 chr13 27668526 27668634 -74204535 + AluJb SINE Alu 17 126 -186 1105 344 103 17 chr13 27668958 27669716 -74203453 + L2 LINE L2 1950 2772 -542 198 338 165 8 chr13 27669822 27669955 -74203214 + L2 LINE L2 2920 3073 -199 1901 119 14 3 chr13 27671248 27671543 -74201626 - AluSq SINE Alu -15 298 1 21 82 0 0 chr13 27673716 27673765 -74199404 + GC_rich Low_complexity Low_complexity 1 49 0 300 240 200 16 chr13 27675649 27675774 -74197395 + MIR3 SINE MIR 58 205 -3 256 274 60 24 chr13 27675801 27675885 -74197284 + L3 LINE CR1 1277 1363 -214 295 323 65 13 chr13 27677567 27677722 -74195447 + MIR3 SINE MIR 20 182 -26 186 43 0 0 chr13 27677789 27677812 -74195357 + (TG)n Simple_repeat Simple_repeat 1 23 0 427 287 129 30 chr13 27677847 27678049 -74195120 + MIR SINE MIR 41 262 0 507 262 94 20 chr13 27678648 27678885 -74194284 - Charlie8 DNA MER1_type -2132 285 17 263 253 242 21 chr13 27679074 27679169 -74194000 - L2 LINE L2 -1 3271 3156 414 258 11 0 chr13 27679609 27679702 -74193467 + MER81 DNA DNA 18 111 -3 * 677 235 135 41 chr13 27679702 27680010 -74193159 + MLT1J1 LTR MaLR 29 366 -80 1081 244 50 45 chr13 27681348 27681729 -74191440 + MLT1J1 LTR MaLR 3 385 -61 310 234 20 164 chr13 27682232 27682433 -74190736 + MER102a DNA MER1_type 152 323 -7 449 266 208 24 chr13 27682684 27682891 -74190278 - MIR SINE MIR -11 251 7 208 351 46 75 chr13 27683334 27683508 -74189661 - L2 LINE L2 0 3272 3104 401 36 18 0 chr13 27683852 27683907 -74189262 + (TC)n Simple_repeat Simple_repeat 1 56 0 1856 147 7 0 chr13 27683947 27684246 -74188923 + AluJb SINE Alu 7 307 -5 197 241 176 37 chr13 27685315 27685423 -74187746 - L2 LINE L2 -944 2370 2248 308 293 84 22 chr13 27685478 27685782 -74187387 + MLT1J2 LTR MaLR 76 416 -34 271 316 58 45 chr13 27686971 27687126 -74186043 - MIR3 SINE MIR -5 203 47 205 325 79 16 chr13 27687200 27687326 -74185843 - L2 LINE L2 0 3313 3180 1945 145 0 0 chr13 27687430 27687726 -74185443 + AluSx SINE Alu 1 296 -16 1608 141 54 30 chr13 27688534 27688831 -74184338 - AluJo SINE Alu -8 304 1 261 0 0 0 chr13 27688865 27688894 -74184275 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1551 188 90 37 chr13 27689015 27689472 -74183697 - Charlie4a DNA MER1_type -2 506 26 310 338 39 0 chr13 27690012 27690166 -74183003 + L1ME4a LINE L1 5571 5730 -391 370 275 58 7 chr13 27690311 27690449 -74182720 + L1ME4a LINE L1 5956 6100 -21 362 182 0 0 chr13 27690615 27690681 -74182488 - AluJ/FRAM SINE Alu -10 292 227 2320 176 105 23 chr13 27691512 27691552 -74181617 - MLT2B2 LTR ERVL 0 515 480 939 80 23 17 chr13 27691552 27691727 -74181442 + (CATATA)n Simple_repeat Simple_repeat 4 179 0 2320 176 105 23 chr13 27691727 27692162 -74181007 - MLT2B2 LTR ERVL -35 480 1 265 229 266 0 chr13 27692983 27693092 -74180077 + MIR SINE MIR 55 192 -70 362 289 25 16 chr13 27693481 27693602 -74179567 + MIR3 SINE MIR 65 186 -22 1840 125 14 10 chr13 27693610 27693907 -74179262 - AluSq SINE Alu -15 298 1 4759 135 36 28 chr13 27694210 27695579 -74177590 - pTR5 LTR ERV1 0 2438 743 195 319 29 14 chr13 27695582 27695651 -74177518 - L2 LINE L2 -76 3196 3127 403 248 48 0 chr13 27695680 27695785 -74177384 + MIR SINE MIR 87 196 -66 225 286 88 11 chr13 27696280 27696371 -74176798 + L2 LINE L2 3175 3272 0 562 191 15 0 chr13 27697030 27697161 -74176008 + CT-rich Low_complexity Low_complexity 1 133 0 2033 123 0 3 chr13 27697380 27697673 -74175496 + AluSx SINE Alu 1 292 -20 295 316 165 53 chr13 27697753 27698019 -74175150 + L3 LINE CR1 901 1196 -381 363 220 142 21 chr13 27699086 27699227 -74173942 + LTR33 LTR ERVL 8 165 -356 335 240 27 67 chr13 27699379 27699529 -74173640 + LTR33 LTR ERVL 371 514 -7 249 297 0 55 chr13 27699535 27699626 -74173543 + L2 LINE L2 3186 3271 -1 708 292 11 31 chr13 27699681 27699941 -74173228 + MER112 DNA MER1_type 6 260 0 2027 136 0 7 chr13 27700083 27700392 -74172777 + AluSx SINE Alu 1 307 -5 2073 124 0 3 chr13 27700503 27700801 -74172368 - AluSx SINE Alu -15 297 1 845 245 91 65 chr13 27701492 27701864 -74171305 - L2 LINE L2 -2 3311 2930 2699 192 31 13 chr13 27702002 27702543 -74170626 - L1MB3 LINE L1 -2 6181 5631 345 102 0 0 chr13 27703402 27703461 -74169708 + (TG)n Simple_repeat Simple_repeat 1 59 0 255 293 86 17 chr13 27703496 27703612 -74169557 + MIR SINE MIR 139 262 0 209 277 0 31 chr13 27703629 27703694 -74169475 + GA-rich Low_complexity Low_complexity 3 65 0 297 154 39 19 chr13 27704845 27704949 -74168220 + (CAGAGA)n Simple_repeat Simple_repeat 2 107 0 359 253 95 32 chr13 27706359 27706517 -74166652 + MLT1J2 LTR MaLR 282 449 -1 558 206 290 40 chr13 27706576 27706824 -74166345 + L2 LINE L2 3004 3313 0 557 173 28 6 chr13 27707155 27707268 -74165901 - MER5A DNA MER1_type -4 185 59 1851 138 0 14 chr13 27707268 27707427 -74165742 - AluSx SINE Alu -20 292 137 2043 123 7 0 chr13 27707427 27707727 -74165442 - AluSq SINE Alu -11 302 1 1851 138 0 14 chr13 27707727 27707809 -74165360 - AluSx SINE Alu -175 137 1 393 111 0 0 chr13 27707809 27707863 -74165306 - Alu SINE Alu -249 54 1 * 955 179 60 0 chr13 27707863 27708035 -74165134 + MER58A DNA MER1_type 41 223 -1 278 118 176 81 chr13 27709329 27709465 -74163704 - MER112 DNA MER1_type -77 183 35 184 194 0 0 chr13 27712722 27712753 -74160416 - L2 LINE L2 -25 3247 3217 2460 56 0 0 chr13 27713347 27713649 -74159520 - AluY SINE Alu -9 302 1 371 308 136 5 chr13 27713913 27714127 -74159042 + MIR SINE MIR 18 259 -3 328 284 81 21 chr13 27714185 27714346 -74158823 + MIR SINE MIR 45 216 -46 2121 80 45 3 chr13 27714551 27714838 -74158331 + AluSc SINE Alu 3 301 -8 1214 307 120 53 chr13 27715617 27716758 -74156411 + L2 LINE L2 1672 2735 -578 2050 93 0 17 chr13 27716758 27717048 -74156121 - AluSc SINE Alu -13 296 12 1214 307 120 53 chr13 27717048 27717167 -74156002 + L2 LINE L2 2735 2845 -468 731 202 92 6 chr13 27717167 27717340 -74155829 - MER5A DNA MER1_type 0 189 2 1214 307 120 53 chr13 27717340 27717571 -74155598 + L2 LINE L2 2845 3312 -1 336 307 121 30 chr13 27718907 27719138 -74154031 + MIR SINE MIR 3 254 -8 572 258 83 68 chr13 27719495 27719747 -74153422 - MIR SINE MIR 0 262 7 255 287 0 0 chr13 27720580 27720747 -74152422 + (CA)n Simple_repeat Simple_repeat 2 168 0 366 198 75 19 chr13 27720869 27720975 -74152194 - L1ME4a LINE L1 -1 6120 6009 353 266 0 0 chr13 27721584 27721663 -74151506 - MER117 DNA MER1_type -45 152 74 1971 114 17 0 chr13 27722291 27722581 -74150588 + AluSx SINE Alu 3 297 -15 307 318 63 24 chr13 27723196 27723322 -74149847 - MIR SINE MIR -110 152 22 2164 101 0 16 chr13 27725121 27725427 -74147742 + AluSc SINE Alu 1 301 -8 321 294 18 28 chr13 27725644 27725753 -74147416 + L3 LINE CR1 329 436 -1141 375 332 89 61 chr13 27725834 27726226 -74146943 + L2 LINE L2 2870 3272 0 256 289 198 37 chr13 27726224 27726411 -74146758 + L3 LINE CR1 558 774 -803 * 2427 55 7 3 chr13 27726505 27726815 -74146354 - AluY SINE Alu 0 311 1 432 0 0 0 chr13 27726934 27726982 -74146187 + (TCCA)n Simple_repeat Simple_repeat 2 49 0 340 279 115 57 chr13 27726982 27727226 -74145943 - L2 LINE L2 -25 3288 3031 * 502 311 16 38 chr13 27727210 27727393 -74145776 + L3 LINE CR1 891 1069 -508 2024 100 0 7 chr13 27727421 27727712 -74145457 - AluSg SINE Alu -21 289 1 1203 81 0 6 chr13 27727712 27727873 -74145296 - AluSp SINE Alu -9 304 145 347 343 184 29 chr13 27727906 27728221 -74144948 + L3 LINE CR1 1144 1507 -70 21 0 0 0 chr13 27728408 27728429 -74144740 + AT_rich Low_complexity Low_complexity 1 21 0 347 269 77 29 chr13 27729362 27729466 -74143703 - L2 LINE L2 -1 3271 3163 316 237 349 6 chr13 27729640 27729809 -74143360 - MIR SINE MIR 0 262 36 784 233 47 55 chr13 27730557 27730832 -74142337 - MER20B DNA MER1_type -292 491 219 346 328 40 45 chr13 27730947 27731145 -74142024 + L2 LINE L2 3117 3313 0 2100 104 0 13 chr13 27732174 27732483 -74140686 - AluSx SINE Alu -7 305 1 251 193 53 0 chr13 27734391 27734448 -74138721 - L2 LINE L2 0 3272 3213 206 96 0 96 chr13 27734768 27734820 -74138349 + (CCCCG)n Simple_repeat Simple_repeat 1 47 0 475 263 80 62 chr13 27737135 27737428 -74135741 - L1MC4a LINE L1 -1844 5964 5663 4281 190 47 18 chr13 27737428 27738266 -74134903 + MER21B LTR ERV1 1 862 -1 475 263 80 62 chr13 27738266 27738310 -74134859 - L1MC4a LINE L1 -2145 5663 5621 2059 119 10 0 chr13 27738812 27739106 -74134063 - AluSx SINE Alu -15 297 1 371 296 67 79 chr13 27739254 27739494 -74133675 + LTR67 LTR ERVL 3 239 -318 421 183 54 11 chr13 27739565 27739658 -74133511 + LTR67 LTR ERVL 458 554 -3 385 331 55 0 chr13 27740176 27740303 -74132866 - L2 LINE L2 0 3272 3139 186 367 17 0 chr13 27740348 27740408 -74132761 - MIR SINE MIR -112 96 36 183 129 0 0 chr13 27740521 27740552 -74132617 + (TC)n Simple_repeat Simple_repeat 1 31 0 527 268 93 22 chr13 27741152 27741200 -74131969 + MIR SINE MIR 59 102 -160 1353 180 33 59 chr13 27741200 27741506 -74131663 + AluJo SINE Alu 3 300 -12 527 268 93 22 chr13 27741506 27741640 -74131529 + MIR SINE MIR 102 254 -8 263 232 29 43 chr13 27741645 27741714 -74131455 - MIR SINE MIR -106 156 89 196 313 0 16 chr13 27741722 27741786 -74131383 - L2 LINE L2 -78 3194 3132 24 32 0 0 chr13 27742081 27742112 -74131057 + AT_rich Low_complexity Low_complexity 1 31 0 674 228 60 102 chr13 27742201 27742244 -74130925 - L1MC4a LINE L1 -1922 5886 5843 2202 95 0 0 chr13 27742244 27742539 -74130630 + AluSg SINE Alu 1 295 -15 674 228 60 102 chr13 27742539 27742877 -74130292 - L1MC4a LINE L1 -1965 5843 5521 315 237 35 79 chr13 27744354 27744468 -74128701 - MIR SINE MIR -42 220 112 23 0 0 0 chr13 27744581 27744604 -74128565 + AT_rich Low_complexity Low_complexity 1 23 0 263 319 0 0 chr13 27744754 27744823 -74128346 - L3 LINE CR1 -1 1576 1508 251 93 23 0 chr13 27744929 27744972 -74128197 + (TG)n Simple_repeat Simple_repeat 2 45 0 252 0 0 0 chr13 27745733 27745761 -74127408 + (T)n Simple_repeat Simple_repeat 1 28 0 2385 81 0 0 chr13 27746735 27747043 -74126126 - AluSg SINE Alu -2 308 1 1337 96 127 22 chr13 27747144 27747373 -74125796 - L1MB4 LINE L1 0 6180 5928 380 57 0 267 chr13 27747384 27747449 -74125720 - MADE1 DNA Mariner -3 77 49 1956 135 0 31 chr13 27747449 27747768 -74125401 + AluSq SINE Alu 1 309 -4 380 57 0 267 chr13 27747768 27747807 -74125362 - MADE1 DNA Mariner -31 49 1 1377 166 12 0 chr13 27748156 27748409 -74124760 - L1MB3 LINE L1 -7 6176 5921 1567 181 13 13 chr13 27748571 27748881 -74124288 + AluJo SINE Alu 1 310 -2 23 0 0 0 chr13 27748881 27748904 -74124265 + AT_rich Low_complexity Low_complexity 1 23 0 1906 148 0 0 chr13 27749205 27749503 -74123666 - AluJo SINE Alu 0 312 15 491 299 87 0 chr13 27750389 27750573 -74122596 + MIR SINE MIR 14 213 -49 528 59 0 0 chr13 27750703 27750729 -74122440 + (TTCC)n Simple_repeat Simple_repeat 1 94 0 528 59 0 0 chr13 27750729 27750797 -74122372 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1029 183 22 27 chr13 27750829 27751053 -74122116 - AluJo SINE Alu -3 309 87 199 280 0 0 chr13 27751231 27751281 -74121888 + L2 LINE L2 2456 2505 -809 1697 166 14 0 chr13 27751626 27751915 -74121254 - AluJb SINE Alu -19 293 1 269 321 0 45 chr13 27751931 27752043 -74121126 + L2 LINE L2 3159 3265 -48 2296 81 0 0 chr13 27752174 27752469 -74120700 - AluY SINE Alu -16 295 1 425 290 124 14 chr13 27752514 27752659 -74120510 + MIR SINE MIR 6 166 -96 217 0 61 0 chr13 27753432 27753465 -74119704 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 301 298 93 15 chr13 27753465 27753651 -74119518 + MIR SINE MIR 28 220 -42 345 326 11 17 chr13 27754147 27754328 -74118841 - MER104 DNA Tc2 0 180 1 264 355 48 36 chr13 27754379 27754545 -74118624 - MIR SINE MIR -69 193 26 2064 62 66 4 chr13 27754687 27754960 -74118209 - AluY SINE Alu -21 290 1 234 293 0 20 chr13 27755446 27755462 -74117707 - L1MB1 LINE L1 -227 5941 5926 514 316 140 18 chr13 27755462 27755911 -74117258 - L1MC4a LINE L1 -1884 5924 5421 423 263 266 1 chr13 27756452 27756635 -74116534 + MIR SINE MIR 30 258 -4 572 298 132 17 chr13 27756770 27757065 -74116104 + MER102a DNA MER1_type 2 330 0 439 301 68 36 chr13 27757204 27757423 -74115746 - MIR SINE MIR -33 229 4 246 285 101 119 chr13 27758437 27758774 -74114395 - L2 LINE L2 -4 3268 2938 965 220 62 59 chr13 27759446 27759854 -74113315 - Zaphod DNA AcHobo -27 4004 3595 * 1016 188 114 45 chr13 27759851 27760297 -74112872 - Zaphod DNA AcHobo -3040 991 515 1206 168 5 0 chr13 27760297 27760506 -74112663 + MER2 DNA MER2_type 1 210 -135 932 261 135 88 chr13 27760615 27761067 -74112102 - Zaphod DNA AcHobo -3515 516 44 572 177 44 55 chr13 27761066 27761247 -74111922 - MER53 DNA DNA -7 182 4 * 623 171 0 9 chr13 27761300 27761411 -74111758 + FLAM_A SINE Alu 25 134 -8 2060 139 0 0 chr13 27761532 27761827 -74111342 - AluSx SINE Alu -17 295 1 202 224 20 0 chr13 27762141 27762190 -74110979 - L2 LINE L2 0 3313 3264 * 571 277 123 5 chr13 27762157 27762352 -74110817 - MIR SINE MIR -10 252 35 1622 197 59 72 chr13 27762576 27763134 -74110035 + L1M4 LINE L1 4640 5190 -956 278 325 138 52 chr13 27764558 27765370 -74107799 + L2 LINE L2 2388 3269 -3 216 0 0 0 chr13 27766339 27766363 -74106806 + (CA)n Simple_repeat Simple_repeat 2 25 0 297 340 60 0 chr13 27766451 27766551 -74106618 + MIR3 SINE MIR 88 193 -15 253 121 318 0 chr13 27767338 27767404 -74105765 + MER31B LTR ERV1 351 437 -29 186 43 0 0 chr13 27767404 27767427 -74105742 + (A)n Simple_repeat Simple_repeat 1 23 0 920 125 0 22 chr13 27767972 27768108 -74105061 + FLAM_C SINE Alu 1 133 0 1033 156 84 9 chr13 27768113 27768338 -74104831 + L1MB2 LINE L1 5928 6169 -2 668 169 8 0 chr13 27768382 27768512 -74104657 + CT-rich Low_complexity Low_complexity 2 132 0 2933 209 76 29 chr13 27768554 27768616 -74104553 - L1ME1 LINE L1 -5 6230 6172 855 199 32 5 chr13 27768616 27768802 -74104367 - L1PA16 LINE L1 -17 6149 5959 2933 209 76 29 chr13 27768802 27770002 -74103167 - L1ME1 LINE L1 -63 6172 4893 333 0 0 0 chr13 27770002 27770039 -74103130 + (TG)n Simple_repeat Simple_repeat 2 38 0 2933 209 76 29 chr13 27770039 27770102 -74103067 - L1ME1 LINE L1 -1342 4893 4834 1086 234 27 10 chr13 27770117 27770644 -74102525 - L1ME1 LINE L1 -2438 3777 2853 4191 216 117 72 chr13 27770658 27770942 -74102227 - L1ME1 LINE L1 -3873 2523 2253 2275 112 26 0 chr13 27770942 27771246 -74101923 - AluSx SINE Alu 0 312 1 4191 216 117 72 chr13 27771246 27771561 -74101608 - L1ME1 LINE L1 -4143 2253 1954 648 205 0 33 chr13 27771561 27771683 -74101486 - FLAM_A SINE Alu -15 118 1 4191 216 117 72 chr13 27771683 27772306 -74100863 - L1ME1 LINE L1 -4442 1954 1360 2037 113 32 26 chr13 27772306 27772616 -74100553 - AluSx SINE Alu 0 312 1 4191 216 117 72 chr13 27772616 27773433 -74099736 - L1ME1 LINE L1 -5036 1360 390 495 222 103 29 chr13 27773476 27773719 -74099450 - HAL1 LINE L1 0 2507 2247 1179 256 163 33 chr13 27773999 27774632 -74098537 - HAL1 LINE L1 -604 1903 1189 2089 118 10 38 chr13 27774636 27774950 -74098219 - AluSx SINE Alu -4 308 4 256 230 35 11 chr13 27775074 27775161 -74098008 + MER53 DNA DNA 101 189 0 * 355 192 0 0 chr13 27775089 27775167 -74098002 - MER53 DNA DNA -108 81 4 315 309 80 6 chr13 27775951 27776113 -74097056 + L1MC/D LINE L1 5607 5780 -2028 21 0 0 0 chr13 27776251 27776272 -74096897 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 27776570 27776603 -74096566 + AT_rich Low_complexity Low_complexity 1 33 0 299 259 15 74 chr13 27776673 27776808 -74096361 + MARNA DNA Mariner 216 342 -244 200 329 0 0 chr13 27778245 27778318 -74094851 + G-rich Low_complexity Low_complexity 1 73 0 345 24 0 0 chr13 27779793 27779835 -74093334 + (A)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 27780651 27780672 -74092497 + AT_rich Low_complexity Low_complexity 1 21 0 239 224 0 52 chr13 27786513 27786571 -74086598 + L2 LINE L2 3203 3257 -15 2145 127 0 3 chr13 27786699 27787006 -74086163 + AluSx SINE Alu 1 306 -6 31 26 0 0 chr13 27787409 27787447 -74085722 + AT_rich Low_complexity Low_complexity 1 38 0 2131 109 10 3 chr13 27787943 27788245 -74084924 + AluSx SINE Alu 1 304 -8 2345 111 0 0 chr13 27788584 27788891 -74084278 + AluSx SINE Alu 1 307 -5 1858 204 154 9 chr13 27789074 27789632 -74083537 + L1MC4a LINE L1 7121 7759 -49 261 119 0 0 chr13 27789639 27789681 -74083488 + (TG)n Simple_repeat Simple_repeat 2 43 0 1422 203 41 0 chr13 27789685 27789951 -74083218 - AluJb SINE Alu -35 277 1 232 96 19 39 chr13 27789953 27790005 -74083164 + L1MC4 LINE L1 7991 8041 -1 922 197 0 0 chr13 27790685 27790837 -74082332 - FAM SINE Alu -27 158 7 672 284 46 5 chr13 27790840 27791034 -74082135 - MIR SINE MIR -28 234 33 993 73 0 0 chr13 27791124 27791248 -74081921 + AluSq/x SINE Alu 1 124 -189 408 115 16 0 chr13 27791250 27791311 -74081858 + AluS SINE Alu 232 293 -19 23 0 0 0 chr13 27792094 27792117 -74081052 + AT_rich Low_complexity Low_complexity 1 23 0 1879 154 26 7 chr13 27792380 27792686 -74080483 + AluJb SINE Alu 1 312 0 2367 101 3 13 chr13 27793190 27793506 -74079663 + AluSq SINE Alu 1 313 0 1104 171 22 40 chr13 27793632 27793684 -74079485 + AluJb SINE Alu 82 133 -179 1380 188 0 96 chr13 27793684 27794008 -74079161 + AluJb SINE Alu 1 293 -19 1104 171 22 40 chr13 27794008 27794177 -74078992 + AluJb SINE Alu 133 299 -13 279 0 0 0 chr13 27794200 27794231 -74078938 + (TG)n Simple_repeat Simple_repeat 1 31 0 396 0 0 0 chr13 27794279 27794323 -74078846 + (TG)n Simple_repeat Simple_repeat 2 45 0 2009 123 3 11 chr13 27794324 27794609 -74078560 - AluSx SINE Alu -29 283 1 855 216 0 12 chr13 27794643 27794810 -74078359 + FRAM SINE Alu 1 165 -1 2312 67 0 0 chr13 27795595 27795900 -74077269 + AluY SINE Alu 1 305 0 441 200 152 36 chr13 27796689 27796854 -74076315 + MER105 DNA DNA 21 204 0 371 337 58 0 chr13 27797011 27797183 -74075986 - MIR SINE MIR -34 228 47 222 329 82 12 chr13 27797396 27797481 -74075688 + L2 LINE L2 3178 3268 -4 216 0 0 0 chr13 27797518 27797542 -74075627 + (A)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr13 27797597 27797632 -74075537 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 27798000 27798023 -74075146 + AT_rich Low_complexity Low_complexity 1 23 0 1800 148 11 0 chr13 27798214 27798527 -74074642 + AluSx SINE Alu 1 316 0 2012 129 7 7 chr13 27799151 27799446 -74073723 + AluSg SINE Alu 1 295 -15 1785 139 0 0 chr13 27799471 27799715 -74073454 + AluSx SINE Alu 1 244 -68 2401 82 3 13 chr13 27799749 27800065 -74073104 + AluSp SINE Alu 1 313 0 2218 97 0 0 chr13 27800068 27800366 -74072803 + AluSc SINE Alu 1 298 0 212 280 108 54 chr13 27801081 27801174 -74071995 + MIR SINE MIR 14 111 -151 2248 122 0 0 chr13 27801345 27801648 -74071521 + AluSx SINE Alu 1 303 -9 817 197 40 0 chr13 27802418 27802570 -74070599 - FRAM SINE Alu -8 158 1 2178 126 0 3 chr13 27802577 27802879 -74070290 - AluSx SINE Alu -11 301 1 949 112 0 22 chr13 27803035 27803169 -74070000 + AluJb SINE Alu 1 131 -181 189 326 0 22 chr13 27805055 27805144 -74068025 - L2 LINE L2 -1405 1909 1823 422 198 113 19 chr13 27805662 27805768 -74067401 - MIR SINE MIR -83 179 64 198 132 0 26 chr13 27805759 27805797 -74067372 + L2 LINE L2 3276 3312 -1 * 260 312 32 48 chr13 27806413 27806459 -74066710 + L2 LINE L2 3149 3194 -78 2207 114 0 22 chr13 27806459 27806495 -74066674 - AluSx SINE Alu 0 312 277 216 0 0 0 chr13 27806495 27806519 -74066650 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2207 114 0 22 chr13 27806519 27806797 -74066372 - AluSx SINE Alu -35 277 5 260 312 32 48 chr13 27806797 27806875 -74066294 + L2 LINE L2 3194 3271 -1 348 83 0 0 chr13 27807594 27807642 -74065527 + (TA)n Simple_repeat Simple_repeat 2 49 0 1498 171 3 70 chr13 27807683 27807981 -74065188 - AluJo SINE Alu -30 282 5 2131 143 0 3 chr13 27808058 27808366 -74064803 - AluSg SINE Alu -3 307 1 2539 57 0 0 chr13 27808502 27808801 -74064368 + AluY SINE Alu 1 299 -12 2227 67 0 3 chr13 27808998 27809320 -74063849 + AluY SINE Alu 1 321 0 2279 93 7 7 chr13 27810405 27810706 -74062463 + AluSg SINE Alu 1 301 -9 848 265 263 25 chr13 27810762 27811234 -74061935 + MLT1K LTR MaLR 2 585 -3 1273 186 27 0 chr13 27811307 27811575 -74061594 + AluJb SINE Alu 86 359 0 201 191 24 0 chr13 27811641 27811683 -74061486 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 27811804 27811825 -74061344 + AT_rich Low_complexity Low_complexity 1 21 0 289 261 70 84 chr13 27811828 27812043 -74061126 - L1MC4 LINE L1 -372 7670 7459 * 494 216 24 78 chr13 27812027 27812194 -74060975 - L1MC4 LINE L1 -1878 5930 5773 828 264 28 6 chr13 27812215 27812473 -74060696 - L1ME4a LINE L1 -278 5843 5572 30 0 0 0 chr13 27812518 27812548 -74060621 + AT_rich Low_complexity Low_complexity 1 30 0 234 105 0 0 chr13 27812650 27812688 -74060481 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 369 0 0 0 chr13 27812983 27813024 -74060145 + (CA)n Simple_repeat Simple_repeat 2 42 0 210 37 0 0 chr13 27813167 27813194 -74059975 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1669 175 7 21 chr13 27813197 27813483 -74059686 - AluJo SINE Alu -30 282 1 528 276 60 37 chr13 27813924 27814275 -74058894 + MLT1K LTR MaLR 228 586 -2 367 270 88 46 chr13 27814484 27814922 -74058247 + LTR33 LTR ERVL 24 508 -13 191 247 54 75 chr13 27815479 27815572 -74057597 + L2 LINE L2 3150 3240 -32 2262 169 54 41 chr13 27815807 27816268 -74056901 + MLT1C LTR MaLR 1 467 0 491 230 66 20 chr13 27816357 27816509 -74056660 + MIR SINE MIR 94 252 -10 284 306 35 0 chr13 27816524 27816609 -74056560 - MIR SINE MIR -57 151 64 2387 82 0 7 chr13 27816901 27817206 -74055963 + AluSc SINE Alu 3 305 -4 203 86 0 29 chr13 27818147 27818182 -74054987 + (GAAA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr13 27818722 27818745 -74054424 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1964 160 3 0 chr13 27818750 27819056 -74054113 - AluSx SINE Alu -5 307 1 848 134 0 22 chr13 27819554 27819688 -74053481 - FLAM_C SINE Alu -2 131 1 2020 139 3 3 chr13 27820006 27820300 -74052869 + AluSx SINE Alu 2 295 -17 182 61 0 30 chr13 27820300 27820333 -74052836 + (TA)n Simple_repeat Simple_repeat 2 33 0 936 160 0 0 chr13 27820339 27820489 -74052680 + AluJb SINE Alu 143 292 -20 1519 185 11 0 chr13 27820493 27820753 -74052416 - AluJo SINE Alu -49 263 1 406 224 191 7 chr13 27821004 27821151 -74052018 + MER5A DNA MER1_type 9 182 -7 43 0 0 0 chr13 27821597 27821640 -74051529 + AT_rich Low_complexity Low_complexity 1 43 0 225 269 15 0 chr13 27823348 27823415 -74049754 + Tigger7 DNA MER2_type 1774 1841 -646 247 261 205 4 chr13 27823969 27824147 -74049022 - MIR SINE MIR -54 208 3 2624 105 8 6 chr13 27824500 27824862 -74048307 - THE1B LTR MaLR 0 364 2 2233 111 3 3 chr13 27825607 27825914 -74047255 + AluSc SINE Alu 1 307 -2 2142 138 0 0 chr13 27825964 27826276 -74046893 - AluSx SINE Alu 0 312 1 22 0 0 0 chr13 27826458 27826480 -74046689 + AT_rich Low_complexity Low_complexity 1 22 0 364 343 92 18 chr13 27826510 27826793 -74046376 + L3 LINE CR1 1193 1496 -81 2079 123 3 7 chr13 27827521 27827823 -74045346 - AluSx SINE Alu -11 301 1 1933 170 0 0 chr13 27828070 27828359 -74044810 - AluJo SINE Alu -23 289 1 2336 99 3 0 chr13 27828424 27828726 -74044443 - AluSp SINE Alu -10 303 1 1797 155 3 23 chr13 27829165 27829474 -74043695 + AluJo SINE Alu 1 303 -9 2173 114 0 3 chr13 27829924 27830213 -74042956 + AluSg SINE Alu 1 288 -22 2076 134 13 0 chr13 27830415 27830713 -74042456 + AluSx SINE Alu 1 302 -10 2584 40 3 0 chr13 27830713 27831012 -74042157 + AluY SINE Alu 1 301 -10 2174 112 10 0 chr13 27832510 27832805 -74040364 - AluSp SINE Alu -15 298 1 4723 254 73 42 chr13 27832927 27833898 -74039271 + L1MEc LINE L1 34 973 -5423 2391 71 3 7 chr13 27833898 27834193 -74038976 - AluSp SINE Alu -19 294 1 4723 254 73 42 chr13 27834193 27834812 -74038357 + L1MEc LINE L1 973 1571 -4825 1987 148 0 0 chr13 27834812 27835090 -74038079 + AluSg SINE Alu 2 279 -31 315 0 0 0 chr13 27835093 27835128 -74038041 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4723 254 73 42 chr13 27835128 27835490 -74037679 + L1MEc LINE L1 1572 2053 -4343 246 278 79 56 chr13 27836327 27836453 -74036716 + MIR3 SINE MIR 4 132 -76 28 71 0 0 chr13 27836506 27836562 -74036607 + AT_rich Low_complexity Low_complexity 1 56 0 1112 166 9 74 chr13 27836655 27836713 -74036456 + MER46A DNA MER2_type 1 61 -2670 634 159 106 0 chr13 27836713 27836826 -74036343 - FLAM_A SINE Alu -8 125 1 1112 166 9 74 chr13 27836826 27836996 -74036173 + MER46A DNA MER2_type 61 214 -22 2259 105 0 0 chr13 27837016 27837302 -74035867 - AluSq SINE Alu -23 290 5 191 308 0 0 chr13 27837322 27837374 -74035795 + L2 LINE L2 3216 3267 -5 348 83 0 0 chr13 27838099 27838147 -74035022 + (TA)n Simple_repeat Simple_repeat 2 49 0 1490 171 3 70 chr13 27838188 27838486 -74034683 - AluJo SINE Alu -30 282 5 2125 143 0 3 chr13 27838563 27838871 -74034298 - AluSg SINE Alu -3 307 1 2579 57 0 0 chr13 27839007 27839306 -74033863 + AluY SINE Alu 1 299 -12 2279 67 0 3 chr13 27839503 27839825 -74033344 + AluY SINE Alu 1 321 0 341 237 10 31 chr13 27840661 27840758 -74032411 + MER69 DNA AcHobo 2096 2190 -336 868 128 0 30 chr13 27841494 27841627 -74031542 - FLAM_C SINE Alu -3 130 2 294 298 18 61 chr13 27841768 27841995 -74031174 + MLT1L LTR MaLR 107 317 -194 436 255 0 28 chr13 27842709 27842815 -74030354 + MER5A DNA MER1_type 4 106 -83 306 0 0 0 chr13 27843764 27843798 -74029371 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2202 122 0 0 chr13 27843800 27844094 -74029075 - AluSx SINE Alu -18 294 1 2385 107 22 25 chr13 27844642 27845007 -74028162 + THE1B LTR MaLR 1 364 0 2327 99 0 0 chr13 27845785 27846078 -74027091 + AluSc SINE Alu 1 293 -16 10485 22 3 184 chr13 27846165 27846218 -74026951 - SVA Other Other 0 1386 1325 234 0 0 0 chr13 27846218 27846244 -74026925 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 10485 22 3 184 chr13 27846244 27847901 -74025268 - SVA Other Other -61 1325 3 22 0 0 0 chr13 27847901 27847923 -74025246 + GC_rich Low_complexity Low_complexity 1 22 0 476 314 20 25 chr13 27847923 27848165 -74025004 + CT-rich Low_complexity Low_complexity 1 240 0 257 409 0 8 chr13 27848109 27848241 -74024928 + C-rich Low_complexity Low_complexity 3 133 0 * 2064 130 17 3 chr13 27848554 27848846 -74024323 + AluSx SINE Alu 1 296 -16 3194 128 23 54 chr13 27848847 27849455 -74023714 + L1MA7 LINE L1 5701 6289 -2 235 268 179 0 chr13 27849489 27849612 -74023557 - MIR3 SINE MIR -28 180 36 288 95 24 0 chr13 27850590 27850632 -74022537 + MER75 DNA T2_type 462 504 0 1541 253 104 41 chr13 27850648 27850790 -74022379 + L2 LINE L2 2046 2178 -1136 2350 154 48 17 chr13 27850790 27851206 -74021963 - MSTB1 LTR MaLR -2 430 2 1541 253 104 41 chr13 27851206 27851871 -74021298 + L2 LINE L2 2178 2904 -410 431 143 78 0 chr13 27851878 27851955 -74021214 - Charlie4a DNA MER1_type -2 506 424 2035 141 0 6 chr13 27851955 27852268 -74020901 - AluSx SINE Alu -1 311 1 2047 141 0 0 chr13 27852311 27852595 -74020574 - AluSx SINE Alu -25 287 4 291 100 186 0 chr13 27852602 27852672 -74020497 - Charlie4a DNA MER1_type -75 433 351 1885 203 12 15 chr13 27852689 27853098 -74020071 - Charlie4a DNA MER1_type -100 408 1 636 298 114 27 chr13 27853101 27853477 -74019692 + L2 LINE L2 2905 3313 0 23 33 0 0 chr13 27853588 27853618 -74019551 + AT_rich Low_complexity Low_complexity 1 30 0 223 303 62 21 chr13 27853965 27854110 -74019059 - L2 LINE L2 -955 2359 2209 2116 166 63 96 chr13 27855540 27855910 -74017259 + MER69 DNA AcHobo 1932 2312 -214 2480 95 0 0 chr13 27855910 27856214 -74016955 + AluSx SINE Alu 1 304 -8 2116 166 63 96 chr13 27856214 27856400 -74016769 + MER69 DNA AcHobo 2312 2470 -56 1958 145 3 0 chr13 27856400 27856705 -74016464 + AluSx SINE Alu 1 306 0 2116 166 63 96 chr13 27856705 27856761 -74016408 + MER69 DNA AcHobo 2470 2526 0 258 205 246 57 chr13 27857600 27857722 -74015447 + MIR3 SINE MIR 38 182 -26 282 247 55 0 chr13 27858021 27858094 -74015075 - MER91C DNA MER1_type -62 78 2 2415 95 3 0 chr13 27858675 27858980 -74014189 + AluSx SINE Alu 7 312 0 427 252 17 17 chr13 27859274 27859393 -74013776 + MER5B DNA MER1_type 1 119 -59 650 237 7 0 chr13 27859534 27859673 -74013496 + MER5B DNA MER1_type 39 178 0 1911 148 0 29 chr13 27860003 27860313 -74012856 + AluSx SINE Alu 1 301 -11 2127 102 3 3 chr13 27861290 27861573 -74011596 + AluSq SINE Alu 1 372 0 676 67 0 0 chr13 27861573 27861662 -74011507 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 207 0 0 0 chr13 27861810 27861833 -74011336 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2072 119 14 3 chr13 27862369 27862655 -74010514 - AluSq SINE Alu -24 289 1 190 274 60 12 chr13 27863656 27863740 -74009429 - MIR3 SINE MIR -16 192 105 2194 102 34 0 chr13 27864329 27864622 -74008547 + AluY SINE Alu 3 305 -6 1133 153 0 11 chr13 27864625 27864815 -74008354 + AluSx SINE Alu 1 188 -124 577 95 36 0 chr13 27864919 27865034 -74008135 + AluSx SINE Alu 195 312 0 341 263 10 10 chr13 27865812 27865911 -74007258 - MIR3 SINE MIR -5 203 105 188 286 76 59 chr13 27866025 27866144 -74007025 + L3b LINE CR1 1179 1299 -284 2167 132 0 7 chr13 27866695 27867005 -74006164 + AluSq SINE Alu 1 308 -5 253 143 40 24 chr13 27867049 27867175 -74005994 + (TA)n Simple_repeat Simple_repeat 1 128 0 259 256 64 0 chr13 27867332 27867410 -74005759 - L1ME LINE L1 -329 5792 5710 358 129 0 0 chr13 27867693 27867755 -74005414 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 764 142 41 0 chr13 27867761 27867930 -74005239 + CT-rich Low_complexity Low_complexity 1 176 0 247 65 0 0 chr13 27867934 27867965 -74005204 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr13 27867965 27867988 -74005181 + (TC)n Simple_repeat Simple_repeat 1 23 0 1508 207 26 26 chr13 27867988 27868170 -74004999 - AluJb SINE Alu -7 305 121 549 0 0 0 chr13 27868170 27868231 -74004938 + (TG)n Simple_repeat Simple_repeat 2 62 0 1508 207 26 26 chr13 27868231 27868352 -74004817 - AluJb SINE Alu -190 122 2 1721 146 27 4 chr13 27869086 27869378 -74003791 - AluJb SINE Alu 0 313 16 1650 99 47 0 chr13 27869495 27869727 -74003442 + AluSx SINE Alu 62 304 -8 1179 146 41 55 chr13 27869727 27869947 -74003222 - MER4E LTR ERV1 -186 593 377 1033 84 156 0 chr13 27870049 27870203 -74002966 - MER4E LTR ERV1 -601 178 1 181 283 33 17 chr13 27870596 27870656 -74002513 - MIR SINE MIR -51 211 151 205 163 61 0 chr13 27870657 27870706 -74002463 - L2 LINE L2 0 3313 3262 1057 78 0 0 chr13 27870732 27870861 -74002308 + AluSq/x SINE Alu 1 129 -184 6299 224 122 48 chr13 27871040 27871259 -74001910 - L1MC3 LINE L1 0 7785 7584 2291 117 10 0 chr13 27871259 27871568 -74001601 - AluSx SINE Alu 0 312 1 6299 224 122 48 chr13 27871568 27872009 -74001160 - L1MC3 LINE L1 -201 7584 7177 2519 55 6 13 chr13 27872009 27872320 -74000849 - AluY SINE Alu -2 309 1 6299 224 122 48 chr13 27872320 27872760 -74000409 - L1MC3 LINE L1 -608 7177 6771 1089 200 9 14 chr13 27872760 27872980 -74000189 + MER20 DNA MER1_type 1 219 0 6299 224 122 48 chr13 27872980 27873296 -73999873 - L1MC3 LINE L1 -1014 6771 6480 2290 113 0 3 chr13 27873296 27873605 -73999564 + AluSx SINE Alu 1 308 -4 6299 224 122 48 chr13 27873605 27874498 -73998671 - L1MC3 LINE L1 -1305 6480 5298 2193 107 33 3 chr13 27874749 27875079 -73998090 + AluSc SINE Alu 1 339 0 2143 97 3 48 chr13 27875226 27875536 -73997633 + AluSg SINE Alu 1 296 -14 282 221 104 0 chr13 27875829 27875906 -73997263 - MIR SINE MIR -55 207 123 2098 138 0 3 chr13 27876186 27876483 -73996686 - AluJo SINE Alu -16 296 1 556 190 33 43 chr13 27876521 27876705 -73996464 - Charlie7 DNA MER1_type 0 2612 2431 989 302 78 44 chr13 27876754 27877168 -73996001 - Charlie7 DNA MER1_type -2062 550 112 1931 110 18 14 chr13 27877168 27877480 -73995689 - AluSq SINE Alu 0 313 1 989 302 78 44 chr13 27877480 27877590 -73995579 - Charlie7 DNA MER1_type -2500 112 7 2575 116 29 60 chr13 27877590 27877780 -73995389 + Tigger2a DNA MER2_type 1 195 -2513 1900 139 13 10 chr13 27877780 27878081 -73995088 + AluJb SINE Alu 1 302 -10 2575 116 29 60 chr13 27878081 27878167 -73995002 + Tigger2a DNA MER2_type 195 282 -2426 2405 84 7 0 chr13 27878167 27878466 -73994703 + AluSp SINE Alu 1 301 -12 2575 116 29 60 chr13 27878466 27878635 -73994534 + Tigger2a DNA MER2_type 282 433 -1 1418 77 0 0 chr13 27879456 27879637 -73993532 + AluY SINE Alu 131 311 0 1900 126 18 0 chr13 27879696 27880013 -73993156 - AluSx SINE Alu 0 324 3 2109 125 0 0 chr13 27881212 27881499 -73991670 - AluSg SINE Alu -23 287 1 1779 179 0 22 chr13 27881630 27881943 -73991226 + AluSx SINE Alu 2 307 -5 206 105 53 0 chr13 27881953 27881991 -73991178 + A-rich Low_complexity Low_complexity 1 40 0 2104 130 10 0 chr13 27882319 27882620 -73990549 - AluSx SINE Alu -8 304 1 763 211 75 111 chr13 27882632 27882986 -73990183 - HAL1 LINE L1 -147 2360 2026 2241 99 3 0 chr13 27882986 27883311 -73989858 - AluSp SINE Alu 0 326 1 763 211 75 111 chr13 27883311 27883449 -73989720 - HAL1 LINE L1 -481 2026 1885 718 281 92 20 chr13 27883448 27883743 -73989426 - HAL1 LINE L1 -2081 426 111 * 232 125 0 0 chr13 27883877 27883909 -73989260 - MER46A DNA MER2_type 0 236 205 2210 111 3 0 chr13 27883909 27884198 -73988971 + AluSq SINE Alu 1 290 -23 1112 166 9 74 chr13 27884218 27884388 -73988781 - MER46A DNA MER2_type -2517 214 61 634 159 106 0 chr13 27884388 27884501 -73988668 + FLAM_A SINE Alu 1 125 -8 1112 166 9 74 chr13 27884501 27884559 -73988610 - MER46A DNA MER2_type -2670 61 1 28 71 0 0 chr13 27884652 27884708 -73988461 + AT_rich Low_complexity Low_complexity 1 56 0 246 278 79 56 chr13 27884761 27884887 -73988282 - MIR3 SINE MIR -76 132 4 4723 254 73 42 chr13 27885724 27886086 -73987083 - L1MEc LINE L1 -4343 2053 1704 315 0 0 0 chr13 27886086 27886121 -73987048 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1987 148 0 0 chr13 27886124 27886402 -73986767 - AluSg SINE Alu -31 279 2 4723 254 73 42 chr13 27886402 27887021 -73986148 - L1MEc LINE L1 -4693 1703 1105 2391 71 3 7 chr13 27887021 27887316 -73985853 + AluSp SINE Alu 1 294 -19 4723 254 73 42 chr13 27887316 27888287 -73984882 - L1MEc LINE L1 -5291 1105 34 2174 112 10 0 chr13 27888409 27888704 -73984465 + AluSp SINE Alu 1 298 -15 2617 36 3 0 chr13 27890203 27890505 -73982664 - AluY SINE Alu -8 303 1 2114 128 13 0 chr13 27890505 27890802 -73982367 - AluSx SINE Alu -10 302 1 34 55 0 0 chr13 27890941 27890996 -73982173 + AT_rich Low_complexity Low_complexity 1 55 0 494 216 24 78 chr13 27890996 27891163 -73982006 + L1MC4 LINE L1 5773 5930 -1878 255 207 98 24 chr13 27891147 27891229 -73981940 + L1MC4 LINE L1 7459 7546 -496 * 324 106 0 0 chr13 27891310 27891357 -73981812 + Alu SINE Alu 255 301 -1 243 268 138 43 chr13 27891554 27891692 -73981477 + MLT1K LTR MaLR 252 402 -186 4070 149 19 27 chr13 27891705 27892402 -73980767 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 27892432 27892471 -73980698 - MER21A LTR ERV1 -22 909 872 5311 64 31 0 chr13 27892471 27893141 -73980028 + LTR8 LTR ERV1 1 691 0 2773 136 57 47 chr13 27893141 27893453 -73979716 - MER21A LTR ERV1 -59 872 549 2037 89 100 0 chr13 27893453 27893724 -73979445 - AluSp SINE Alu -15 298 1 2773 136 57 47 chr13 27893724 27893880 -73979289 - MER21A LTR ERV1 -382 549 396 757 245 16 16 chr13 27893891 27894079 -73979090 - AluJb SINE Alu -18 294 107 1200 143 56 5 chr13 27894108 27894324 -73978845 - MER21A LTR ERV1 -704 227 1 349 273 109 0 chr13 27894331 27894441 -73978728 + MLT1K LTR MaLR 435 556 -32 2443 96 0 3 chr13 27895508 27895821 -73977348 + AluSx SINE Alu 1 312 0 188 171 0 0 chr13 27895918 27895953 -73977216 - MIR SINE MIR -111 151 117 297 0 0 0 chr13 27896252 27896285 -73976884 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 27896327 27896356 -73976813 + AT_rich Low_complexity Low_complexity 1 29 0 1539 156 8 38 chr13 27896399 27896662 -73976507 - AluJo SINE Alu -57 255 1 2207 148 16 34 chr13 27896666 27897063 -73976106 - L1MB3 LINE L1 -48 6135 5747 486 340 20 5 chr13 27897063 27897266 -73975903 - L3 LINE CR1 -164 1413 1208 1776 140 0 0 chr13 27898439 27898703 -73974466 + AluSx SINE Alu 49 312 0 2344 98 3 0 chr13 27898826 27899122 -73974047 + AluSc SINE Alu 1 297 -12 288 0 0 0 chr13 27899734 27899766 -73973403 + (TC)n Simple_repeat Simple_repeat 2 33 0 1893 171 41 36 chr13 27901793 27902156 -73971013 - MLT1A1 LTR MaLR 0 365 1 281 261 69 23 chr13 27902320 27902450 -73970719 + MER5A DNA MER1_type 4 139 -50 250 281 140 18 chr13 27902553 27902667 -73970502 + MIR SINE MIR 20 147 -115 306 296 51 0 chr13 27902788 27902886 -73970283 + L2 LINE L2 2560 2662 -652 21 0 0 0 chr13 27903337 27903358 -73969811 + AT_rich Low_complexity Low_complexity 1 21 0 3536 154 48 165 chr13 27903404 27904229 -73968940 - L1MC3 LINE L1 0 7785 6865 537 154 22 0 chr13 27904229 27904320 -73968849 - Tigger5 DNA MER2_type 0 2323 2231 231 200 40 0 chr13 27904327 27904377 -73968792 - Tigger5 DNA MER2_type -2270 53 2 3536 154 48 165 chr13 27904377 27904625 -73968544 - L1MC3 LINE L1 -926 6859 6708 2263 144 78 8 chr13 27904636 27905033 -73968136 - MSTB LTR MaLR -1 425 1 28 0 0 0 chr13 27905059 27905087 -73968082 + AT_rich Low_complexity Low_complexity 1 28 0 712 209 7 0 chr13 27905110 27905249 -73967920 - FLAM_C SINE Alu -1 142 3 2251 101 0 3 chr13 27905303 27905599 -73967570 + AluSg SINE Alu 1 295 -15 583 255 60 30 chr13 27905863 27906130 -73967039 + L1ME4a LINE L1 5831 6105 -16 1948 143 0 3 chr13 27906267 27906567 -73966602 - AluJb SINE Alu -13 299 1 27 0 0 0 chr13 27906618 27906645 -73966524 + AT_rich Low_complexity Low_complexity 1 27 0 335 194 28 14 chr13 27906720 27906792 -73966377 - L2 LINE L2 0 3313 3241 363 276 23 51 chr13 27906810 27906897 -73966272 + L1ME4a LINE L1 5690 5778 -343 2406 87 0 13 chr13 27906897 27907207 -73965962 + AluY SINE Alu 1 306 -5 363 276 23 51 chr13 27907207 27907333 -73965836 + L1ME4a LINE L1 5778 5897 -224 1962 122 54 4 chr13 27907486 27907764 -73965405 - AluSg SINE Alu -18 292 1 882 121 0 64 chr13 27908270 27908411 -73964758 - FLAM_C SINE Alu 0 133 2 421 221 229 0 chr13 27908661 27908783 -73964386 - MIR SINE MIR -11 251 102 181 318 12 0 chr13 27908783 27908868 -73964301 + L2 LINE L2 2148 2233 -1081 243 236 160 38 chr13 27908875 27908981 -73964188 + L2 LINE L2 3195 3313 0 355 216 134 0 chr13 27909285 27909382 -73963787 + MIR SINE MIR 14 123 -139 452 300 109 48 chr13 27909389 27909437 -73963732 - MLT1K LTR MaLR 0 588 544 189 0 0 0 chr13 27909437 27909458 -73963711 + (CAA)n Simple_repeat Simple_repeat 1 21 0 452 300 109 48 chr13 27909458 27909897 -73963272 - MLT1K LTR MaLR -44 544 1 403 293 158 34 chr13 27910471 27910768 -73962401 + L2 LINE L2 2904 3237 -76 2128 103 4 4 chr13 27910778 27911090 -73962079 - AluSx SINE Alu 0 312 1 2056 113 4 0 chr13 27911537 27911831 -73961338 - AluSx SINE Alu 0 301 7 608 31 31 10 chr13 27912861 27912957 -73960212 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 2235 98 0 3 chr13 27913187 27913497 -73959672 + AluSx SINE Alu 1 309 0 2168 114 7 3 chr13 27916214 27916522 -73956647 + AluSx SINE Alu 1 309 -3 1466 103 79 5 chr13 27916525 27916739 -73956430 + MER30 DNA MER1_type 1 230 0 233 261 0 58 chr13 27917543 27917612 -73955557 + L2 LINE L2 3206 3270 -2 24 0 0 0 chr13 27918236 27918260 -73954909 + AT_rich Low_complexity Low_complexity 1 24 0 466 186 0 12 chr13 27918270 27918356 -73954813 - AluJ/FLAM SINE Alu -226 86 2 644 241 21 7 chr13 27918872 27919017 -73954152 - MER58B DNA MER1_type 0 341 195 288 234 0 31 chr13 27918988 27919052 -73954117 - MER58B DNA MER1_type -279 62 1 * 269 323 134 25 chr13 27919063 27919264 -73953905 - MIR SINE MIR 0 262 40 2143 126 3 0 chr13 27919853 27920146 -73953023 - AluSx SINE Alu -18 294 1 198 250 14 83 chr13 27920261 27920333 -73952836 - MIR SINE MIR -78 184 118 924 217 0 0 chr13 27920696 27920894 -73952275 - AluJo SINE Alu -1 311 114 316 219 14 0 chr13 27920894 27920967 -73952202 - L1ME2 LINE L1 -15 6149 6076 708 215 37 6 chr13 27921972 27922135 -73951034 + MIR SINE MIR 31 198 -64 875 193 14 45 chr13 27922141 27922364 -73950805 - L2 LINE L2 -3 3310 3095 2188 107 0 0 chr13 27922364 27922644 -73950525 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr13 27922646 27922673 -73950496 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 274 215 25 91 chr13 27923129 27923250 -73949919 + L2 LINE L2 3152 3264 -49 2233 126 7 0 chr13 27926026 27926336 -73946833 - AluSx SINE Alu 0 312 1 660 245 31 20 chr13 27926341 27926537 -73946632 - L1MC5 LINE L1 -54 7907 7710 2036 164 49 49 chr13 27927057 27927296 -73945873 - MSTB LTR MaLR 0 426 185 2185 127 0 0 chr13 27927296 27927587 -73945582 - AluSx SINE Alu -21 291 1 2036 164 49 49 chr13 27927587 27927773 -73945396 - MSTB LTR MaLR -240 186 1 328 308 0 0 chr13 27927945 27928036 -73945133 + L2 LINE L2 3219 3309 -4 503 226 94 31 chr13 27928119 27928278 -73944891 + MIR SINE MIR 46 214 -48 240 86 0 0 chr13 27929403 27929438 -73943731 + (A)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr13 27929923 27929957 -73943212 + (TG)n Simple_repeat Simple_repeat 2 35 0 2229 104 3 3 chr13 27930602 27930899 -73942270 - AluSc SINE Alu -12 297 1 2624 105 8 6 chr13 27931644 27932006 -73941163 + THE1B LTR MaLR 2 364 0 247 261 205 4 chr13 27932359 27932537 -73940632 + MIR SINE MIR 3 208 -54 225 269 15 0 chr13 27933089 27933156 -73940013 - Tigger7 DNA MER2_type -646 1841 1774 2233 126 7 0 chr13 27935060 27935370 -73937799 - AluSx SINE Alu 0 312 1 660 245 31 20 chr13 27935375 27935571 -73937598 - L1MC5 LINE L1 -54 7907 7710 2036 164 49 49 chr13 27936091 27936330 -73936839 - MSTB LTR MaLR 0 426 185 2185 127 0 0 chr13 27936330 27936621 -73936548 - AluSx SINE Alu -21 291 1 2036 164 49 49 chr13 27936621 27936807 -73936362 - MSTB LTR MaLR -240 186 1 328 308 0 0 chr13 27936979 27937070 -73936099 + L2 LINE L2 3219 3309 -4 503 226 94 31 chr13 27937153 27937312 -73935857 + MIR SINE MIR 46 214 -48 240 86 0 0 chr13 27938437 27938472 -73934697 + (A)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr13 27938957 27938991 -73934178 + (TG)n Simple_repeat Simple_repeat 2 35 0 2347 80 3 13 chr13 27939636 27939938 -73933231 - AluSq SINE Alu -12 301 3 369 0 0 0 chr13 27940978 27941019 -73932150 + (TG)n Simple_repeat Simple_repeat 2 42 0 2373 148 46 7 chr13 27941434 27941846 -73931323 - MSTC LTR MaLR 0 428 1 1251 171 9 5 chr13 27943212 27943428 -73929741 + AluJo SINE Alu 83 299 -13 2406 101 0 0 chr13 27944755 27945062 -73928107 + AluSg SINE Alu 4 310 0 286 176 20 0 chr13 27945199 27945250 -73927919 - MER66B LTR ERV1 -140 346 295 1582 101 4 13 chr13 27945387 27945614 -73927555 - AluSp SINE Alu -1 312 88 1236 223 10 14 chr13 27946688 27946979 -73926190 - AluSp SINE Alu -13 290 1 2128 138 0 19 chr13 27947007 27947325 -73925844 + AluJb SINE Alu 1 312 0 1275 128 8 64 chr13 27947466 27947701 -73925468 - AluSq SINE Alu -4 309 88 1731 197 7 3 chr13 27948004 27948314 -73924855 - AluJb SINE Alu -1 311 1 36 53 0 0 chr13 27948319 27948376 -73924793 + AT_rich Low_complexity Low_complexity 1 57 0 1921 126 30 0 chr13 27948397 27948688 -73924481 - AluSg SINE Alu 0 301 3 749 186 16 115 chr13 27948774 27949027 -73924142 - L1MD2 LINE L1 -1 6358 6131 * 21624 87 8 4 chr13 27949011 27949034 -73924135 - L1P LINE L1 -2124 4022 4001 389 98 0 0 chr13 27949034 27949095 -73924074 - L1PA3 LINE L1 -1 6154 6094 21624 87 8 4 chr13 27949095 27952065 -73921104 - L1P LINE L1 -2145 4001 1018 1767 170 35 3 chr13 27952123 27952411 -73920758 - AluJb SINE Alu -15 297 1 1238 114 0 0 chr13 27952418 27952584 -73920585 - AluSx SINE Alu -2 310 145 385 141 0 31 chr13 27952585 27952649 -73920520 - AluJo SINE Alu -121 181 120 993 171 0 47 chr13 27952662 27952832 -73920337 - AluSx SINE Alu -150 162 1 508 186 12 0 chr13 27953000 27953086 -73920083 - MER7C DNA MER2_type -28 574 488 2091 119 0 75 chr13 27953092 27953227 -73919942 - MER1B DNA MER1_type -2379 333 189 1540 116 9 21 chr13 27953227 27953460 -73919709 + MER30 DNA MER1_type 1 230 0 2091 119 0 75 chr13 27953460 27953684 -73919485 - MER1B DNA MER1_type -2523 189 1 * 2482 163 40 50 chr13 27953684 27954186 -73918983 - MER7C DNA MER2_type -105 497 1 1631 117 0 0 chr13 27954648 27954870 -73918299 - AluSg/x SINE Alu -19 293 72 1885 134 31 3 chr13 27954875 27955166 -73918003 - AluSx SINE Alu -11 301 3 2226 106 0 0 chr13 27955599 27955913 -73917256 - AluSq SINE Alu 0 314 1 207 0 0 0 chr13 27955939 27955962 -73917207 + (T)n Simple_repeat Simple_repeat 1 23 0 1629 165 34 3 chr13 27956068 27956359 -73916810 + AluJb SINE Alu 1 300 -12 653 247 124 10 chr13 27956386 27956580 -73916589 + MIR SINE MIR 44 259 -3 1967 109 55 0 chr13 27956600 27956874 -73916295 - AluSx SINE Alu -23 289 1 233 260 0 0 chr13 27957078 27957128 -73916041 + Charlie8 DNA MER1_type 1362 1411 -1006 2323 96 3 10 chr13 27957298 27957477 -73915692 - AluSx SINE Alu 0 312 134 2228 110 3 0 chr13 27957477 27957798 -73915371 - AluSp SINE Alu 0 313 1 2323 96 3 10 chr13 27957798 27957932 -73915237 - AluSx SINE Alu -178 134 1 21 0 0 0 chr13 27958060 27958081 -73915088 + AT_rich Low_complexity Low_complexity 1 21 0 1459 204 145 85 chr13 27958232 27958866 -73914303 - LTR1B LTR ERV1 -88 738 67 378 276 20 23 chr13 27959008 27959313 -73913856 + GA-rich Low_complexity Low_complexity 1 304 0 216 148 34 45 chr13 27959336 27959424 -73913745 + GA-rich Low_complexity Low_complexity 1 87 0 369 258 26 23 chr13 27959497 27959761 -73913408 + GA-rich Low_complexity Low_complexity 1 264 0 299 98 0 20 chr13 27959761 27959812 -73913357 - LTR1B LTR ERV1 -776 50 1 760 189 49 0 chr13 27959837 27960001 -73913168 + L1MC1 LINE L1 6162 6333 0 296 271 17 34 chr13 27960011 27960129 -73913040 - MIR SINE MIR 0 262 147 247 349 40 24 chr13 27960220 27960346 -73912823 - MIR SINE MIR -112 150 23 627 288 35 35 chr13 27960663 27960892 -73912277 - MIR SINE MIR -9 253 25 2021 141 0 17 chr13 27961401 27961720 -73911449 + AluSx SINE Alu 1 312 0 675 269 124 22 chr13 27961916 27962191 -73910978 + L1ME4a LINE L1 5566 5868 -253 1239 217 51 74 chr13 27962228 27962577 -73910592 - L1MC5 LINE L1 -66 7895 7562 2329 96 0 7 chr13 27962577 27962878 -73910291 + AluSq SINE Alu 1 299 -14 1239 217 51 74 chr13 27962878 27963094 -73910075 - L1MC5 LINE L1 -399 7562 7343 2011 159 86 0 chr13 27963123 27963482 -73909687 + MLT1B LTR MaLR 1 390 0 828 130 0 46 chr13 27963602 27963733 -73909436 + FLAM_C SINE Alu 1 125 -18 645 286 77 15 chr13 27963756 27963952 -73909217 - MIR SINE MIR -28 234 27 741 300 44 4 chr13 27964390 27964617 -73908552 + MIR SINE MIR 2 237 -25 7951 110 27 25 chr13 27965697 27966938 -73906231 - MER52C LTR ERV1 0 1278 35 1254 185 46 108 chr13 27967718 27968107 -73905062 + MLT1A1 LTR MaLR 1 365 0 2035 82 0 4 chr13 27968205 27968472 -73904697 + AluSg SINE Alu 14 279 -31 328 0 20 41 chr13 27968475 27968524 -73904645 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 452 291 65 34 chr13 27968554 27968780 -73904389 - MIR SINE MIR -6 256 21 22 0 0 0 chr13 27968799 27968821 -73904348 + AT_rich Low_complexity Low_complexity 1 22 0 2104 149 18 39 chr13 27969641 27969680 -73903489 - THE1C LTR MaLR 0 375 337 2104 141 0 0 chr13 27969680 27969992 -73903177 + AluSx SINE Alu 1 312 0 2104 149 18 39 chr13 27969992 27970335 -73902834 - THE1C LTR MaLR -38 337 1 241 276 134 55 chr13 27970879 27971006 -73902163 + L2 LINE L2 3136 3272 0 1691 168 93 110 chr13 27971494 27971895 -73901274 - MLT2B1 LTR ERVL 0 520 129 1748 167 21 70 chr13 27971895 27972205 -73900964 + MLT1A1 LTR MaLR 1 290 -75 2144 99 0 3 chr13 27972205 27972498 -73900671 - AluSq SINE Alu -16 297 6 1748 167 21 70 chr13 27972498 27972571 -73900598 + MLT1A1 LTR MaLR 290 365 0 1691 168 93 110 chr13 27972571 27972698 -73900471 - MLT2B1 LTR ERVL -391 129 1 387 241 60 9 chr13 27972791 27972907 -73900262 - LTR67 LTR ERVL 0 557 436 276 258 21 129 chr13 27973093 27973287 -73899882 - LTR67 LTR ERVL -364 193 21 1633 175 145 7 chr13 27973936 27974370 -73898799 - LTR54B LTR ERV1 -4 494 1 242 360 9 45 chr13 27974982 27975000 -73898169 + L2 LINE L2 2444 2461 -853 2232 71 3 13 chr13 27975000 27975308 -73897861 - AluSx SINE Alu -7 305 1 242 360 9 45 chr13 27975308 27975400 -73897769 + L2 LINE L2 2461 2550 -764 2401 51 3 13 chr13 27975628 27975940 -73897229 - AluY SINE Alu -2 309 1 2018 115 0 20 chr13 27976368 27976672 -73896497 - AluSx SINE Alu -14 298 1 1285 259 120 41 chr13 27976852 27977461 -73895708 + MLT2F LTR ERVL 1 657 -6 358 288 55 31 chr13 27977994 27978157 -73895012 + MIR SINE MIR 96 262 0 382 313 52 8 chr13 27978200 27978334 -73894835 - MIR SINE MIR 0 262 123 1792 185 93 14 chr13 27978604 27979036 -73894133 + MLT1C LTR MaLR 2 467 0 445 273 126 16 chr13 27979163 27979346 -73893823 - MIR SINE MIR -59 203 1 1877 203 7 56 chr13 27980213 27980292 -73892877 - MSTD LTR MaLR -2 394 313 2037 119 6 3 chr13 27980292 27980603 -73892566 + AluSx SINE Alu 1 312 0 1877 203 7 56 chr13 27980603 27980936 -73892233 - MSTD LTR MaLR -83 313 2 331 276 38 0 chr13 27980957 27981062 -73892107 + LTR33 LTR ERVL 33 141 -380 275 81 0 0 chr13 27981113 27981150 -73892019 + MLT2A2 LTR ERVL 267 303 -150 * 496 261 69 15 chr13 27981117 27981247 -73891922 + MLT2B3 LTR ERVL 267 403 -151 246 118 0 0 chr13 27981229 27981263 -73891906 + MLT2A2 LTR ERVL 293 326 -127 * 535 105 0 0 chr13 27981291 27981367 -73891802 + Alu SINE Alu 220 295 -14 326 0 0 0 chr13 27981367 27981404 -73891765 - MLT2A1 LTR ERVL -346 98 62 615 49 0 0 chr13 27981404 27981486 -73891683 - MLT2A2 LTR ERVL -371 82 1 202 254 0 36 chr13 27981564 27981619 -73891550 + CT-rich Low_complexity Low_complexity 2 54 0 1362 165 9 120 chr13 27982300 27982633 -73890536 - AluJo SINE Alu -4 298 3 644 234 121 40 chr13 27982871 27983097 -73890072 + MIR SINE MIR 19 258 -4 2099 164 22 3 chr13 27984071 27984437 -73888732 - L1MB2 LINE L1 0 6171 5799 432 270 84 22 chr13 27984724 27984902 -73888267 + MIR SINE MIR 62 250 -12 1283 174 4 68 chr13 27985161 27985442 -73887727 + AluJo SINE Alu 1 263 -49 266 0 0 29 chr13 27985941 27985976 -73887193 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1904 109 0 4 chr13 27985984 27986258 -73886911 - AluSx SINE Alu -39 273 1 397 305 41 61 chr13 27987252 27987449 -73885720 - L1ME4a LINE L1 -154 5967 5775 319 250 21 21 chr13 27987452 27987548 -73885621 - L1ME4a LINE L1 -392 5729 5634 4453 230 165 76 chr13 27988014 27988266 -73884903 - HAL1 LINE L1 0 2507 2279 1624 146 0 51 chr13 27988266 27988560 -73884609 - AluJb SINE Alu -11 301 23 4453 230 165 76 chr13 27988560 27990569 -73882600 - HAL1 LINE L1 -228 2279 44 296 339 36 26 chr13 27990945 27991060 -73882109 - MIR SINE MIR -61 147 40 249 300 164 18 chr13 27992628 27992738 -73880431 - MIR SINE MIR -128 134 9 27 29 0 0 chr13 27996520 27996554 -73876615 + AT_rich Low_complexity Low_complexity 1 34 0 829 276 154 34 chr13 27996643 27997110 -73876059 - LTR33A LTR ERVL 0 523 1 2089 161 98 44 chr13 27997347 27997464 -73875705 + MLT1D LTR MaLR 3 112 -393 2138 114 3 16 chr13 27997464 27997779 -73875390 - AluSx SINE Alu -1 311 1 2089 161 98 44 chr13 27997779 27998138 -73875031 + MLT1D LTR MaLR 112 505 0 370 241 62 25 chr13 27998423 27998574 -73874595 + MLT1F1 LTR MaLR 42 198 -369 243 216 0 0 chr13 27998595 27998698 -73874471 + CT-rich Low_complexity Low_complexity 1 103 0 1285 117 146 181 chr13 27999257 27999676 -73873493 - MER4A LTR ERV1 0 664 261 507 263 67 34 chr13 27999745 27999924 -73873245 - MIR SINE MIR -70 192 8 1916 129 7 0 chr13 28000046 28000375 -73872794 - AluSx SINE Alu 0 331 1 1068 170 9 65 chr13 28000410 28000640 -73872529 - MER20 DNA MER1_type -2 217 1 312 91 0 0 chr13 28000781 28000825 -73872344 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1636 171 34 0 chr13 28000825 28001117 -73872052 - AluJb SINE Alu -10 302 1 1064 255 93 26 chr13 28001614 28001991 -73871178 - LTR16C LTR ERVL -6 485 84 1895 261 59 33 chr13 28002012 28002584 -73870585 - MLT1E LTR MaLR 0 593 7 2053 120 3 0 chr13 28003533 28003833 -73869336 + AluSg SINE Alu 1 301 -9 1988 146 3 0 chr13 28004071 28004441 -73868728 - AluSx SINE Alu 0 371 1 242 220 88 0 chr13 28004892 28004983 -73868186 + L2 LINE L2 949 1047 -2267 1082 188 14 19 chr13 28005017 28005225 -73867944 - MSTD LTR MaLR -3 393 187 1015 118 6 30 chr13 28005227 28005396 -73867773 - AluSg/x SINE Alu -11 299 135 918 159 19 18 chr13 28005398 28005564 -73867605 - MSTD LTR MaLR -243 153 7 3816 267 132 16 chr13 28005571 28007579 -73865590 + L2 LINE L2 1063 3313 0 1626 41 0 0 chr13 28008254 28008448 -73864721 + L1PA6 LINE L1 5959 6152 -2 2100 166 24 7 chr13 28008482 28008891 -73864278 + L1MB8 LINE L1 5751 6166 -12 339 197 19 188 chr13 28008955 28009062 -73864107 + MER69A DNA AcHobo 2 59 -2467 2194 109 0 0 chr13 28009062 28009365 -73863804 - AluSg SINE Alu -7 303 1 339 197 19 188 chr13 28009365 28009465 -73863704 + MER69A DNA AcHobo 59 174 -3 24 53 0 0 chr13 28009817 28009855 -73863314 + AT_rich Low_complexity Low_complexity 1 38 0 388 301 98 25 chr13 28010966 28011202 -73861967 - MIR SINE MIR -7 255 3 940 226 71 4 chr13 28011329 28011595 -73861574 + L2 LINE L2 2228 2511 -803 9334 103 9 7 chr13 28011598 28012874 -73860295 - HSMAR1 DNA Mariner -3 1284 6 1015 230 224 26 chr13 28012874 28013295 -73859874 + L2 LINE L2 2514 2850 -463 2075 195 6 3 chr13 28013295 28013659 -73859510 - MLT1A1 LTR MaLR 0 365 1 1015 230 224 26 chr13 28013659 28013899 -73859270 + L2 LINE L2 2850 3312 -1 1608 146 56 14 chr13 28014030 28014317 -73858852 - AluJb SINE Alu -11 301 3 494 194 95 122 chr13 28014973 28015231 -73857938 - L1MC5 LINE L1 -14 7947 7697 1938 149 0 3 chr13 28015231 28015539 -73857630 + AluJb SINE Alu 1 307 -5 494 194 95 122 chr13 28015539 28015584 -73857585 - L1MC5 LINE L1 -264 7697 7652 368 291 81 34 chr13 28015822 28015970 -73857199 + MIR SINE MIR 50 204 -58 1940 125 0 67 chr13 28016079 28016408 -73856761 + AluSx SINE Alu 1 307 -5 667 289 95 48 chr13 28017223 28017559 -73855610 + L2 LINE L2 2916 3267 -5 350 168 40 173 chr13 28017571 28017695 -73855474 - MIR SINE MIR -11 251 155 2067 99 7 17 chr13 28017695 28017987 -73855182 - AluSx SINE Alu -23 289 1 350 168 40 173 chr13 28017987 28018035 -73855134 - MIR SINE MIR -107 155 102 862 138 0 15 chr13 28018809 28018939 -73854230 + FLAM_A SINE Alu 1 128 -5 203 229 0 0 chr13 28019015 28019050 -73854119 + (CGTG)n Simple_repeat Simple_repeat 4 38 0 1579 263 118 39 chr13 28019194 28019698 -73853471 + MER115 DNA AcHobo 11 575 -118 2279 200 113 16 chr13 28019698 28020257 -73852912 + MER90 LTR ERV1 2 614 0 1579 263 118 39 chr13 28020257 28020372 -73852797 + MER115 DNA AcHobo 575 679 -14 1962 108 0 0 chr13 28020971 28021240 -73851929 - AluSx SINE Alu -2 310 42 461 127 14 0 chr13 28021240 28021311 -73851858 - AluS SINE Alu -239 73 2 2061 114 0 32 chr13 28021808 28022116 -73851053 - AluSx SINE Alu -14 298 1 340 108 45 27 chr13 28022117 28022219 -73850950 + T-rich Low_complexity Low_complexity 3 109 -6 2279 89 3 10 chr13 28022219 28022533 -73850636 - AluSx SINE Alu 0 312 1 858 137 0 0 chr13 28022558 28022675 -73850494 + FLAM_C SINE Alu 2 118 -15 34 24 0 0 chr13 28022675 28022716 -73850453 + AT_rich Low_complexity Low_complexity 1 41 0 547 272 48 77 chr13 28022716 28022811 -73850358 - L1MC4 LINE L1 -24 8018 7922 306 0 0 0 chr13 28022811 28022845 -73850324 + (CA)n Simple_repeat Simple_repeat 2 35 0 547 272 48 77 chr13 28022845 28023131 -73850038 - L1MC4 LINE L1 -120 7922 7544 5213 129 28 23 chr13 28023148 28024022 -73849147 - L1MC1 LINE L1 -16 6317 5440 182 330 22 22 chr13 28024023 28024114 -73849055 - L3 LINE CR1 -164 1413 1323 775 234 16 96 chr13 28024234 28024537 -73848632 + Charlie8 DNA MER1_type 1 279 -2138 247 267 53 0 chr13 28024586 28024661 -73848508 + Charlie8 DNA MER1_type 2339 2417 0 1217 189 68 4 chr13 28024709 28024881 -73848288 - AluJo SINE Alu 0 307 109 198 0 0 0 chr13 28024881 28024903 -73848266 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1217 189 68 4 chr13 28024903 28025019 -73848150 - AluJo SINE Alu -198 109 2 255 239 14 42 chr13 28025026 28025097 -73848072 - MIR SINE MIR -75 187 119 208 270 63 16 chr13 28026461 28026524 -73846645 - L2 LINE L2 -55 3217 3152 467 296 136 0 chr13 28026646 28026808 -73846361 - MER63A DNA MER1_type -23 187 4 948 147 0 0 chr13 28026837 28026987 -73846182 + FRAM SINE Alu 8 157 -19 396 228 50 95 chr13 28027439 28027628 -73845541 - MIR3 SINE MIR -7 201 17 2405 162 86 35 chr13 28027644 28028157 -73845012 + LTR55 LTR ERV 1 539 -9 1719 166 0 3 chr13 28028198 28028487 -73844682 + AluJb SINE Alu 1 288 -24 26 0 0 0 chr13 28028488 28028514 -73844655 + AT_rich Low_complexity Low_complexity 1 26 0 442 221 52 44 chr13 28029398 28029534 -73843635 - MIR SINE MIR -47 215 79 1181 153 64 70 chr13 28029566 28029880 -73843289 + MER33 DNA MER1_type 6 317 -7 576 268 90 38 chr13 28031240 28031425 -73841744 + MIR3 SINE MIR 5 205 -3 2371 93 0 0 chr13 28031747 28032060 -73841109 - AluSq SINE Alu 0 313 1 1263 203 12 92 chr13 28032593 28032881 -73840288 - Charlie5 DNA MER1_type 0 2624 2379 1698 158 11 0 chr13 28032881 28033166 -73840003 - AluJo SINE Alu -23 289 2 1263 203 12 92 chr13 28033166 28033300 -73839869 - Charlie5 DNA MER1_type -245 2379 2236 553 217 17 0 chr13 28033310 28033430 -73839739 - MER3 DNA MER1_type -87 122 48 268 264 18 45 chr13 28033517 28033627 -73839542 + L2 LINE L2 3160 3266 -6 186 43 0 0 chr13 28034700 28034723 -73838446 + (TTG)n Simple_repeat Simple_repeat 2 24 0 768 286 24 78 chr13 28035430 28035842 -73837327 - MLT1K LTR MaLR 0 588 199 511 296 62 36 chr13 28036136 28036410 -73836759 + L1MC4 LINE L1 7618 7898 -144 339 25 0 0 chr13 28036417 28036457 -73836712 + (TG)n Simple_repeat Simple_repeat 2 41 0 650 166 283 0 chr13 28036888 28037033 -73836136 - MLT1D LTR MaLR 0 505 320 1359 212 61 88 chr13 28037266 28037375 -73835794 + L1MC5 LINE L1 7260 7370 -591 2177 68 3 19 chr13 28037375 28037721 -73835448 + AluY SINE Alu 1 311 0 1359 212 61 88 chr13 28037721 28038088 -73835081 + L1MC5 LINE L1 7370 7746 -215 248 0 0 30 chr13 28038088 28038121 -73835048 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2266 60 4 0 chr13 28038125 28038406 -73834763 - AluY SINE Alu -29 282 1 1359 212 61 88 chr13 28038406 28038451 -73834718 + L1MC5 LINE L1 7749 7794 -167 11066 34 1 0 chr13 28038451 28040514 -73832655 + L1PA5 LINE L1 4090 6153 -1 1359 212 61 88 chr13 28040514 28040674 -73832495 + L1MC5 LINE L1 7794 7929 -32 814 241 85 98 chr13 28040699 28041217 -73831952 + MLT1J LTR MaLR 1 511 0 246 297 16 0 chr13 28041302 28041366 -73831803 - L2 LINE L2 -220 3052 2988 1293 171 105 49 chr13 28041402 28041688 -73831481 + AluJb SINE Alu 1 302 0 237 265 20 82 chr13 28042237 28042335 -73830834 + MIR SINE MIR 56 147 -61 391 152 22 87 chr13 28043010 28043102 -73830067 - MLT1D LTR MaLR -323 182 95 2130 96 3 7 chr13 28043228 28043530 -73829639 + AluSx SINE Alu 1 301 -11 1710 199 39 34 chr13 28043530 28043938 -73829231 - MLT1D LTR MaLR -95 410 1 1570 174 7 4 chr13 28045611 28045909 -73827260 - AluJb SINE Alu 0 307 9 1864 132 0 24 chr13 28045982 28046277 -73826892 + AluSx SINE Alu 1 288 -24 380 213 143 49 chr13 28046304 28046548 -73826621 + L1ME4a LINE L1 5855 6121 0 438 241 86 37 chr13 28047210 28047372 -73825797 + MIR SINE MIR 69 238 -24 925 111 0 42 chr13 28047626 28047770 -73825399 + AluJo SINE Alu 2 139 -173 1563 168 15 4 chr13 28047774 28048042 -73825127 + AluJo SINE Alu 21 291 -21 4319 188 51 9 chr13 28049022 28049391 -73823778 - MER54A LTR ERVL -2 899 547 2313 56 10 7 chr13 28049391 28049696 -73823473 + AluY SINE Alu 3 308 -3 4319 188 51 9 chr13 28049696 28050189 -73822980 - MER54A LTR ERVL -354 547 1 753 212 61 30 chr13 28050321 28050519 -73822650 - MIR SINE MIR -11 251 48 250 261 118 65 chr13 28051029 28051182 -73821987 + L2 LINE L2 3108 3268 -4 1794 165 0 0 chr13 28052247 28052538 -73820631 - AluJb SINE Alu -20 292 2 1695 69 142 0 chr13 28053722 28054010 -73819159 + AluY SINE Alu 1 323 0 2340 98 48 31 chr13 28054091 28054449 -73818720 + THE1B LTR MaLR 1 364 0 448 241 36 9 chr13 28055913 28056025 -73817144 + MIR SINE MIR 32 146 -116 2106 127 0 10 chr13 28056581 28056895 -73816274 + AluSx SINE Alu 1 311 -1 374 332 31 57 chr13 28057113 28057188 -73815981 - L2 LINE L2 -3 3269 3194 850 132 0 31 chr13 28057188 28057317 -73815852 + FLAM_C SINE Alu 3 127 -6 374 332 31 57 chr13 28057317 28057434 -73815735 - L2 LINE L2 -78 3194 3082 382 194 21 11 chr13 28057961 28058054 -73815115 - L1ME3A LINE L1 0 6170 6077 202 294 59 0 chr13 28058913 28058981 -73814188 - L2 LINE L2 0 3272 3201 886 289 87 18 chr13 28059036 28059412 -73813757 + MLT1J2 LTR MaLR 66 444 -6 2247 97 0 7 chr13 28059495 28059803 -73813366 + AluSg SINE Alu 1 306 -4 319 232 24 73 chr13 28059856 28059938 -73813231 + L1MC4 LINE L1 6635 6712 -1330 331 290 71 18 chr13 28060051 28060220 -73812949 + MLT1K LTR MaLR 229 406 -182 1529 246 90 44 chr13 28060664 28061230 -73811939 - MLT1G1 LTR MaLR -3 592 1 361 284 26 84 chr13 28061302 28061351 -73811818 + MLT1K LTR MaLR 393 443 -145 1800 163 0 7 chr13 28061351 28061671 -73811498 + AluSx SINE Alu 1 312 0 361 284 26 84 chr13 28061671 28061811 -73811358 + MLT1K LTR MaLR 443 571 -17 1971 133 0 7 chr13 28061874 28062174 -73810995 - AluSx SINE Alu -14 298 1 311 216 0 40 chr13 28062218 28062292 -73810877 + FLAM SINE Alu 64 125 -8 823 145 8 8 chr13 28062303 28062434 -73810735 + FLAM_C SINE Alu 1 131 -12 371 319 17 17 chr13 28062445 28062564 -73810605 - L2 LINE L2 -4 3309 3191 277 232 42 53 chr13 28062659 28062754 -73810415 - L2 LINE L2 -1206 2108 2015 2318 75 0 0 chr13 28062793 28063087 -73810082 + AluSc SINE Alu 1 294 -15 216 67 0 0 chr13 28063298 28063328 -73809841 + (GA)n Simple_repeat Simple_repeat 1 30 0 432 0 0 0 chr13 28063328 28063376 -73809793 + (TG)n Simple_repeat Simple_repeat 2 49 0 388 276 32 87 chr13 28063713 28063898 -73809271 - MIR3 SINE MIR -4 204 30 449 312 39 34 chr13 28064542 28064747 -73808422 - MIR SINE MIR 0 262 57 348 259 24 0 chr13 28064854 28064939 -73808230 - MIR SINE MIR -110 152 66 1553 181 20 10 chr13 28064966 28065259 -73807910 - AluJb SINE Alu -16 296 1 579 245 86 0 chr13 28065308 28065447 -73807722 - MIR SINE MIR -5 257 107 2171 118 0 0 chr13 28065647 28065944 -73807225 + AluSx SINE Alu 2 298 -14 389 273 94 38 chr13 28066064 28066371 -73806798 + MLT1J LTR MaLR 219 542 0 416 266 133 73 chr13 28067066 28067435 -73805734 - MLT1K LTR MaLR -11 577 187 2321 87 0 0 chr13 28067472 28067770 -73805399 + AluSg SINE Alu 1 298 -12 1087 147 17 82 chr13 28068103 28068335 -73804834 - MER20 DNA MER1_type 0 219 3 424 265 70 76 chr13 28068604 28068711 -73804458 - MIR SINE MIR -70 192 85 1852 122 14 10 chr13 28068711 28069007 -73804162 + AluJb SINE Alu 1 297 -15 424 265 70 76 chr13 28069007 28069084 -73804085 - MIR SINE MIR -177 85 9 491 289 8 63 chr13 28069426 28069572 -73803597 + MIR3 SINE MIR 6 143 -65 1794 169 0 0 chr13 28069572 28069868 -73803301 - AluJo SINE Alu -15 297 2 491 289 8 63 chr13 28069868 28069911 -73803258 + MIR3 SINE MIR 143 187 -21 1581 141 74 27 chr13 28071115 28071413 -73801756 - AluJo SINE Alu 0 312 1 359 311 61 45 chr13 28071742 28071874 -73801295 + L2 LINE L2 3180 3313 0 276 291 0 13 chr13 28071926 28072005 -73801164 + L2 LINE L2 3235 3312 -1 224 308 13 0 chr13 28072594 28072672 -73800497 + CT-rich Low_complexity Low_complexity 4 82 0 1298 224 128 17 chr13 28073115 28073530 -73799639 - MLT1C LTR MaLR -1 466 6 1138 179 63 5 chr13 28073725 28073932 -73799237 + MER20 DNA MER1_type 1 219 0 1935 106 3 3 chr13 28074091 28074411 -73798758 - AluSx SINE Alu 0 320 1 3287 74 2 9 chr13 28074483 28074928 -73798241 - L1PA13 LINE L1 -2 6161 5720 298 323 151 29 chr13 28075127 28075539 -73797630 + L2 LINE L2 2851 3312 -1 2597 103 3 0 chr13 28075861 28076228 -73796941 + L1PA8 LINE L1 5805 6172 0 655 272 112 18 chr13 28076525 28076877 -73796292 + MLT1J LTR MaLR 51 476 -35 412 308 124 58 chr13 28077492 28077944 -73795225 - L2 LINE L2 0 3313 2832 187 225 56 56 chr13 28079180 28079251 -73793918 + MIR SINE MIR 142 212 -50 231 36 0 0 chr13 28081313 28081341 -73791828 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 219 159 0 23 chr13 28082558 28082602 -73790567 + GA-rich Low_complexity Low_complexity 3 45 0 278 238 126 73 chr13 28082636 28082787 -73790382 - MIR SINE MIR -59 203 45 1903 108 11 4 chr13 28084101 28084404 -73788765 - AluSx SINE Alu 0 305 1 252 149 0 0 chr13 28084547 28084594 -73788575 + (TA)n Simple_repeat Simple_repeat 2 48 0 308 246 0 0 chr13 28084616 28084673 -73788496 - L1MC4 LINE L1 -1334 6708 6652 201 74 0 0 chr13 28084971 28084998 -73788171 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 315 254 76 42 chr13 28085399 28085517 -73787652 - L1ME LINE L1 -473 5648 5527 563 306 32 0 chr13 28085707 28085864 -73787305 - MER91B DNA MER1_type 0 190 29 195 366 0 0 chr13 28086237 28086319 -73786850 + L2 LINE L2 2449 2530 -784 2027 149 0 3 chr13 28087154 28087463 -73785706 + AluSx SINE Alu 1 308 -4 1333 246 108 46 chr13 28087585 28088057 -73785112 + MER77 LTR ERV1 119 599 -6 286 218 36 0 chr13 28088031 28088086 -73785083 + MER21A LTR ERV1 682 738 -193 * 203 272 128 48 chr13 28088112 28088237 -73784932 + L3b LINE CR1 1328 1462 -121 253 230 20 90 chr13 28088405 28088505 -73784664 + L2 LINE L2 3221 3313 0 456 129 82 0 chr13 28088574 28088659 -73784510 - L1MB7 LINE L1 -15 6169 6078 246 325 12 0 chr13 28089153 28089233 -73783936 - L2 LINE L2 -6 3307 3227 209 317 69 41 chr13 28089395 28089540 -73783629 - L2 LINE L2 -213 3059 2911 276 320 111 12 chr13 28089631 28089803 -73783366 - L2 LINE L2 -572 2742 2554 229 120 40 20 chr13 28089830 28089880 -73783289 + A-rich Low_complexity Low_complexity 3 53 0 273 119 0 0 chr13 28089932 28089974 -73783195 + (ATG)n Simple_repeat Simple_repeat 1 42 0 603 225 23 0 chr13 28089981 28090110 -73783059 - MIR SINE MIR -42 220 89 181 294 0 0 chr13 28090159 28090210 -73782959 - L2 LINE L2 -942 2372 2322 1347 114 19 215 chr13 28090279 28090683 -73782486 - AluJb SINE Alu 0 330 1 464 353 29 10 chr13 28090731 28090938 -73782231 - L3 LINE CR1 -1131 446 236 1848 152 0 0 chr13 28091345 28091675 -73781494 + AluSx SINE Alu 1 330 0 267 288 15 0 chr13 28091851 28091917 -73781252 + MIR3 SINE MIR 136 202 -6 1351 159 32 62 chr13 28092221 28092529 -73780640 - AluJo SINE Alu -13 299 1 23 54 0 0 chr13 28092770 28092807 -73780362 + AT_rich Low_complexity Low_complexity 1 37 0 1937 96 4 0 chr13 28092807 28093078 -73780091 + AluSq SINE Alu 1 272 -41 2256 49 0 3 chr13 28093080 28093365 -73779804 + AluY SINE Alu 17 300 -11 227 30 0 30 chr13 28093563 28093596 -73779573 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 661 0 0 0 chr13 28094238 28094311 -73778858 - tRNA-Glu-GAA tRNA tRNA -2 73 1 300 253 99 0 chr13 28094473 28094564 -73778605 + L2 LINE L2 2130 2229 -1085 2130 103 0 13 chr13 28095498 28095808 -73777361 + AluSx SINE Alu 1 306 -6 218 221 273 0 chr13 28095857 28095934 -73777235 - MIR SINE MIR -29 233 136 1565 150 15 11 chr13 28096347 28096621 -73776548 - AluJb SINE Alu -9 303 29 894 213 40 0 chr13 28096742 28096916 -73776253 - MER63A DNA MER1_type -2 208 28 2074 117 0 0 chr13 28097058 28097356 -73775813 + AluSx SINE Alu 1 298 -14 359 233 157 57 chr13 28097538 28097697 -73775472 + MER5A DNA MER1_type 15 189 0 209 294 111 46 chr13 28097715 28097868 -73775301 + L2 LINE L2 2658 2820 -494 296 292 52 0 chr13 28098188 28098284 -73774885 - L3b LINE CR1 -144 1439 1339 382 284 47 54 chr13 28099011 28099159 -73774010 + L2 LINE L2 3107 3253 -19 489 235 25 0 chr13 28099160 28099279 -73773890 - MIR SINE MIR -51 211 90 28 48 0 0 chr13 28099310 28099352 -73773817 + AT_rich Low_complexity Low_complexity 1 42 0 1052 232 30 3 chr13 28100251 28100491 -73772678 - MIR SINE MIR 0 262 22 1681 271 124 27 chr13 28100975 28101894 -73771275 + L2 LINE L2 2294 3313 0 2505 175 49 68 chr13 28102605 28102898 -73770271 - MER89 LTR ERV1 0 559 262 1785 137 11 4 chr13 28102898 28103169 -73770000 + AluSx SINE Alu 1 273 -39 2258 84 0 3 chr13 28103179 28103476 -73769693 + AluSx SINE Alu 1 296 -16 2505 175 49 68 chr13 28103476 28103741 -73769428 - MER89 LTR ERV1 -306 253 1 1955 96 7 3 chr13 28103972 28104277 -73768892 + AluSx SINE Alu 1 306 0 2059 123 0 10 chr13 28105108 28105416 -73767753 + AluSq SINE Alu 1 305 -8 2199 100 3 6 chr13 28105645 28105956 -73767213 + AluSg SINE Alu 1 310 0 385 191 85 0 chr13 28106575 28106669 -73766500 + LTR50 LTR ERVL 57 158 -637 895 201 241 74 chr13 28106718 28106989 -73766180 + LTR50 LTR ERVL 292 517 -278 1984 123 3 0 chr13 28106989 28107289 -73765880 - AluSx SINE Alu -6 306 6 895 201 241 74 chr13 28107289 28107449 -73765720 + LTR50 LTR ERVL 517 795 0 1476 220 115 5 chr13 28107670 28108043 -73765126 - LTR40b LTR ERVL -47 415 2 1959 122 7 7 chr13 28108256 28108551 -73764618 - AluSx SINE Alu -12 300 6 189 184 0 53 chr13 28108967 28109005 -73764164 + MIR SINE MIR 220 255 -7 423 306 157 34 chr13 28109162 28109571 -73763598 - L2 LINE L2 -3 3310 2852 803 193 7 0 chr13 28109870 28110015 -73763154 + MER5A DNA MER1_type 1 146 -43 369 248 188 27 chr13 28110065 28110214 -73762955 + MER5A DNA MER1_type 17 189 0 2028 120 0 3 chr13 28110662 28110971 -73762198 - AluSx SINE Alu 0 308 1 235 206 103 41 chr13 28111933 28112079 -73761090 + L1P LINE L1 5270 5424 -742 442 220 209 98 chr13 28112541 28112900 -73760269 - LTR37B LTR ERV1 -1 467 69 1167 174 14 0 chr13 28112915 28113122 -73760047 - AluSg/x SINE Alu -4 308 99 1371 130 30 0 chr13 28113144 28113344 -73759825 + MER1B DNA MER1_type 133 338 -1 2182 116 0 0 chr13 28113612 28113914 -73759255 + AluSx SINE Alu 5 306 -6 2168 100 37 0 chr13 28113941 28114241 -73758928 + AluSp SINE Alu 1 311 -2 327 330 15 74 chr13 28114249 28114300 -73758869 + L1MEd LINE L1 1148 1200 -5172 1699 134 3 55 chr13 28114300 28114607 -73758562 + AluJo SINE Alu 6 296 -16 327 330 15 74 chr13 28114607 28114758 -73758411 + L1MEd LINE L1 1200 1338 -5034 24 32 0 0 chr13 28114783 28114814 -73758355 + AT_rich Low_complexity Low_complexity 1 31 0 426 252 59 51 chr13 28114844 28115098 -73758071 + HAL1 LINE L1 1331 1586 -921 312 318 60 42 chr13 28115398 28115615 -73757554 + L1MEd LINE L1 2188 2408 -3976 2573 53 0 0 chr13 28117822 28118125 -73755044 - AluY SINE Alu -8 303 1 1265 104 0 0 chr13 28118224 28118387 -73754782 - AluSp SINE Alu -17 296 134 1130 144 39 11 chr13 28119119 28119300 -73753869 + AluJo SINE Alu 117 302 -10 237 33 0 0 chr13 28119660 28119690 -73753479 + (CA)n Simple_repeat Simple_repeat 2 31 0 218 54 0 27 chr13 28120000 28120037 -73753132 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 778 241 93 12 chr13 28120230 28120562 -73752607 + L1MEd LINE L1 1899 2257 -4306 3080 245 109 14 chr13 28120567 28122034 -73751135 + L1MEd LINE L1 2514 4131 -2251 710 153 69 28 chr13 28122250 28122394 -73750775 + MIR SINE MIR 3 152 -110 212 260 192 29 chr13 28123511 28123547 -73749622 + MIR3 SINE MIR 63 92 -116 2383 105 0 0 chr13 28123547 28123851 -73749318 - AluSx SINE Alu -8 304 1 212 260 192 29 chr13 28123851 28123918 -73749251 + MIR3 SINE MIR 92 183 -25 2187 118 10 0 chr13 28124449 28124754 -73748415 - AluSx SINE Alu -4 308 1 191 250 18 89 chr13 28125195 28125307 -73747862 + MIR SINE MIR 120 223 -39 2811 0 0 0 chr13 28125512 28125813 -73747356 - AluYa5 SINE Alu -10 301 1 1965 147 0 7 chr13 28126668 28126960 -73746209 - AluSx SINE Alu -22 290 1 206 308 69 54 chr13 28127676 28127806 -73745363 - MIR SINE MIR -129 133 2 270 217 50 0 chr13 28127885 28127945 -73745224 + L2 LINE L2 1732 1794 -1520 2025 136 18 0 chr13 28127955 28128285 -73744884 - Tigger1 DNA MER2_type -4 2414 2079 356 287 98 37 chr13 28128285 28128449 -73744720 + L2 LINE L2 2955 3128 -185 1896 128 82 0 chr13 28128455 28128737 -73744432 - AluSx SINE Alu -7 305 1 4080 161 120 94 chr13 28128888 28129452 -73743717 - L1MD3 LINE L1 -8 7987 7439 552 170 45 0 chr13 28129452 28129564 -73743605 - MLT1F1 LTR MaLR -445 122 6 4080 161 120 94 chr13 28129564 28130138 -73743031 - L1MD3 LINE L1 -556 7439 6705 207 0 0 0 chr13 28130324 28130347 -73742822 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1332 118 53 44 chr13 28132044 28132174 -73740995 + MER30 DNA MER1_type 1 135 -95 2593 30 7 3 chr13 28132174 28132478 -73740691 + AluY SINE Alu 1 305 -6 1332 118 53 44 chr13 28132478 28132575 -73740594 + MER30 DNA MER1_type 135 230 0 2905 137 28 54 chr13 28132656 28133197 -73739972 - MER1A DNA MER1_type 0 527 1 43 35 0 0 chr13 28133328 28133385 -73739784 + AT_rich Low_complexity Low_complexity 1 57 0 2252 128 0 0 chr13 28133520 28133826 -73739343 - AluSq SINE Alu -7 306 1 191 309 18 0 chr13 28134489 28134544 -73738625 + MIR SINE MIR 34 89 -173 341 127 0 0 chr13 28134556 28134611 -73738558 + MADE1 DNA Mariner 1 55 -25 240 296 207 7 chr13 28134612 28134747 -73738422 + MIR SINE MIR 101 262 0 213 301 98 16 chr13 28134766 28134889 -73738280 - L3 LINE CR1 -767 810 678 260 256 25 25 chr13 28136112 28136233 -73736936 + MER104 DNA Tc2 11 131 -49 2334 119 0 0 chr13 28136234 28136544 -73736625 - AluSg SINE Alu 0 310 1 2182 104 7 0 chr13 28136592 28136881 -73736288 - AluSx SINE Alu -21 291 1 1865 142 51 3 chr13 28137095 28137391 -73735778 + AluSq SINE Alu 1 310 -3 203 278 211 50 chr13 28137608 28137788 -73735381 + MIR SINE MIR 48 256 -6 438 200 69 38 chr13 28138450 28138610 -73734559 + L1MEc LINE L1 2230 2394 -4002 * 485 242 45 0 chr13 28138607 28138764 -73734405 - L1M4 LINE L1 -1236 4910 4747 2750 179 78 0 chr13 28138801 28139355 -73733814 + MER7C DNA MER2_type 1 597 -5 726 236 97 42 chr13 28139452 28140112 -73733057 - L1M4 LINE L1 -1576 4570 3712 673 255 5 15 chr13 28140123 28140327 -73732842 - L1M4 LINE L1 -3651 2495 2294 481 270 65 32 chr13 28140326 28140604 -73732565 + L1ME1 LINE L1 4906 5192 -954 * 2417 261 43 23 chr13 28140603 28141319 -73731850 + L1MEc LINE L1 37 771 -5625 2188 110 44 41 chr13 28141319 28141682 -73731487 + THE1B LTR MaLR 1 364 0 2417 261 43 23 chr13 28141682 28141739 -73731430 + L1MEc LINE L1 771 825 -5571 2011 90 4 0 chr13 28141752 28142044 -73731125 + AluY SINE Alu 25 317 0 279 234 85 43 chr13 28142416 28142510 -73730659 + MER5C DNA MER1_type 1 98 -226 2284 119 0 0 chr13 28142619 28142929 -73730240 - AluSx SINE Alu -2 310 1 2089 116 3 14 chr13 28143013 28143330 -73729839 + AluSx SINE Alu 8 312 0 1922 103 84 4 chr13 28143564 28143837 -73729332 + AluSg SINE Alu 1 295 -15 432 241 171 5 chr13 28144738 28144925 -73728244 + L3b LINE CR1 1117 1334 -249 210 260 179 32 chr13 28145149 28145272 -73727897 + L3b LINE CR1 1326 1466 -117 2185 118 7 3 chr13 28146984 28147290 -73725879 - AluSx SINE Alu -5 307 1 2021 200 77 23 chr13 28148407 28148963 -73724206 + L1ME1 LINE L1 5572 6157 -9 191 339 0 0 chr13 28150802 28150861 -73722308 - L2 LINE L2 -2506 808 750 1144 189 9 9 chr13 28150863 28151080 -73722089 - AluJo SINE Alu -9 303 87 809 326 117 30 chr13 28151300 28152000 -73721169 + L2 LINE L2 1927 2687 -627 631 188 8 34 chr13 28152597 28152858 -73720311 + GA-rich Low_complexity Low_complexity 1 253 0 1373 139 175 75 chr13 28152993 28153381 -73719788 - MSTC LTR MaLR -1 427 1 230 263 0 0 chr13 28153482 28153539 -73719630 - L2 LINE L2 -5 3308 3252 2071 125 14 0 chr13 28154081 28154368 -73718801 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr13 28156002 28156023 -73717146 + AT_rich Low_complexity Low_complexity 1 21 0 1097 125 60 10 chr13 28157500 28157700 -73715469 + Tigger2 DNA MER2_type 1 210 -2508 729 179 97 0 chr13 28157706 28157840 -73715329 + Tigger2 DNA MER2_type 2571 2717 -1 2212 108 3 3 chr13 28157844 28158149 -73715020 + AluSx SINE Alu 1 305 -7 29 0 0 0 chr13 28158506 28158535 -73714634 + AT_rich Low_complexity Low_complexity 1 29 0 1774 187 0 3 chr13 28159039 28159322 -73713847 + AluJo SINE Alu 1 282 -30 750 160 8 0 chr13 28159342 28159467 -73713702 - FLAM_C SINE Alu -6 127 2 1468 117 5 31 chr13 28159482 28159704 -73713465 - AluSq SINE Alu -12 301 86 313 68 0 0 chr13 28159805 28159849 -73713320 + Alu SINE Alu 244 287 -15 727 197 111 20 chr13 28159860 28160058 -73713111 + MSTD LTR MaLR 181 396 0 2076 150 0 3 chr13 28160406 28160719 -73712450 + AluSx SINE Alu 1 312 0 2776 58 0 0 chr13 28160757 28161102 -73712067 - L1PA3 LINE L1 -1 6154 5810 1064 238 91 9 chr13 28161150 28161469 -73711700 + L2 LINE L2 2193 2537 -777 3072 155 68 4 chr13 28161470 28162018 -73711151 + Tigger1 DNA MER2_type 2 584 -1834 744 222 14 0 chr13 28162022 28162166 -73711003 - FRAM SINE Alu -29 147 2 2696 97 11 36 chr13 28162199 28162457 -73710712 + Tigger1 DNA MER2_type 1495 1739 -679 2346 79 0 7 chr13 28162457 28162762 -73710407 + AluY SINE Alu 1 303 -8 2696 97 11 36 chr13 28162762 28162947 -73710222 + Tigger1 DNA MER2_type 1739 1927 -491 1194 154 13 60 chr13 28162947 28163143 -73710026 - AluJo SINE Alu -89 223 38 2131 118 16 10 chr13 28163143 28163449 -73709720 + AluSq SINE Alu 1 308 -5 1194 154 13 60 chr13 28163449 28163486 -73709683 - AluJo SINE Alu -274 38 1 635 118 77 186 chr13 28163486 28163707 -73709462 + Tigger1 DNA MER2_type 2220 2416 -2 1042 245 151 22 chr13 28163710 28164186 -73708983 + L2 LINE L2 2537 3128 -185 1780 106 0 109 chr13 28164186 28164525 -73708644 + AluSg1 SINE Alu 1 302 -7 1042 245 151 22 chr13 28164525 28164733 -73708436 + L2 LINE L2 3128 3308 -5 275 68 0 0 chr13 28164773 28164817 -73708352 + Tigger1 DNA MER2_type 1884 1927 -491 677 153 24 8 chr13 28164817 28164941 -73708228 - AluJo SINE Alu -89 223 98 254 316 223 14 chr13 28166005 28166220 -73706949 - MIR SINE MIR -1 261 2 299 280 42 109 chr13 28166402 28166595 -73706574 + L2 LINE L2 2986 3165 -107 2167 100 7 3 chr13 28166855 28167155 -73706014 + AluSx SINE Alu 1 301 -11 2482 67 0 0 chr13 28167215 28167512 -73705657 + AluSc SINE Alu 1 297 -12 1205 231 184 37 chr13 28167791 28168837 -73704332 - L1ME3A LINE L1 -168 6002 4809 * 3902 135 40 34 chr13 28168831 28169402 -73703767 - L1MB3 LINE L1 -8 6175 5596 1611 105 23 139 chr13 28169402 28169746 -73703423 + AluYb8 SINE Alu 1 304 -14 3902 135 40 34 chr13 28169746 28169987 -73703182 - L1MB3 LINE L1 -587 5596 5358 1935 134 67 0 chr13 28170003 28170287 -73702882 + AluJo SINE Alu 1 303 -9 1588 56 15 10 chr13 28170349 28170546 -73702623 + AluSp SINE Alu 1 198 -115 220 378 73 7 chr13 28170552 28170703 -73702466 + L2 LINE L2 2882 3042 -230 2360 82 7 0 chr13 28170904 28171198 -73701971 - AluSp SINE Alu -15 298 3 212 353 63 19 chr13 28171205 28171218 -73701951 + L2 LINE L2 1988 1999 -1315 306 0 0 0 chr13 28171218 28171252 -73701917 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 353 63 19 chr13 28171252 28171445 -73701724 + L2 LINE L2 1999 2203 -1111 481 204 0 0 chr13 28171653 28171741 -73701428 - MER81 DNA DNA -26 88 1 416 222 205 0 chr13 28171757 28171874 -73701295 - MER5A DNA MER1_type 0 189 49 189 94 0 0 chr13 28171874 28171906 -73701263 + (CTG)n Simple_repeat Simple_repeat 3 34 0 259 295 131 25 chr13 28171964 28172086 -73701083 + L2 LINE L2 3160 3294 -19 2035 165 0 0 chr13 28172121 28172418 -73700751 + AluJo SINE Alu 1 297 -15 418 329 231 20 chr13 28172670 28173613 -73699556 + L2 LINE L2 1024 3053 -219 308 95 0 0 chr13 28173687 28173729 -73699440 - Cheshire DNA MER1_type -2 2418 2377 302 135 0 122 chr13 28173826 28173900 -73699269 - MER2 DNA MER2_type -280 65 1 1097 195 60 8 chr13 28173910 28174177 -73698992 - Cheshire DNA MER1_type -54 2366 2086 2323 101 0 0 chr13 28174503 28174799 -73698370 - AluSc SINE Alu -13 296 1 1417 186 18 46 chr13 28175058 28175338 -73697831 + AluJo SINE Alu 3 274 -38 207 139 0 0 chr13 28175338 28175374 -73697795 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr13 28175440 28175472 -73697697 + AT_rich Low_complexity Low_complexity 1 32 0 2514 93 14 3 chr13 28175947 28176311 -73696858 + THE1C LTR MaLR 8 375 0 548 306 49 55 chr13 28176311 28176599 -73696570 + L2 LINE L2 2264 2551 -763 2325 102 3 0 chr13 28176599 28176902 -73696267 - AluSx SINE Alu -8 304 1 548 306 49 55 chr13 28176902 28176960 -73696209 + L2 LINE L2 2551 2608 -706 2010 160 6 3 chr13 28177071 28177389 -73695780 + 7SLRNA srpRNA srpRNA 1 319 -1 1033 224 32 5 chr13 28177431 28177650 -73695519 - MIR SINE MIR -7 255 31 438 247 238 23 chr13 28177626 28177951 -73695218 + L2 LINE L2 2772 3177 -136 * 875 282 62 0 chr13 28178014 28178255 -73694914 + MIR SINE MIR 7 262 0 318 329 41 41 chr13 28178318 28178464 -73694705 + MER5A DNA MER1_type 41 186 -3 216 86 0 0 chr13 28178862 28178897 -73694272 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1571 172 0 34 chr13 28179578 28179874 -73693295 - AluJb SINE Alu -21 291 6 2239 137 0 3 chr13 28180010 28180323 -73692846 - AluSx SINE Alu 0 312 1 2316 101 0 3 chr13 28180666 28180972 -73692197 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr13 28181045 28181066 -73692103 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr13 28181144 28181169 -73692000 + (ATG)n Simple_repeat Simple_repeat 1 25 0 242 282 56 28 chr13 28181519 28181590 -73691579 - MIR SINE MIR -115 93 21 258 314 27 96 chr13 28181623 28181811 -73691358 + MIR SINE MIR 82 256 -6 525 190 127 7 chr13 28182017 28182159 -73691010 + MER58C DNA MER1_type 56 214 -1 30 27 0 0 chr13 28182793 28182830 -73690339 + AT_rich Low_complexity Low_complexity 1 37 0 286 330 32 21 chr13 28182920 28183014 -73690155 + MIR3 SINE MIR 4 98 -110 358 366 119 8 chr13 28184304 28184539 -73688630 - MIR SINE MIR 0 262 2 216 260 0 0 chr13 28184676 28184726 -73688443 - L2 LINE L2 0 3313 3264 1026 270 162 42 chr13 28184741 28185471 -73687698 + L2 LINE L2 2497 3313 0 264 356 64 75 chr13 28185466 28185626 -73687543 - L2 LINE L2 -76 3196 3036 * 1967 134 10 3 chr13 28185626 28185933 -73687236 + AluJo SINE Alu 1 309 -3 264 356 64 75 chr13 28185933 28186148 -73687021 - L2 LINE L2 -236 3036 2825 294 225 42 0 chr13 28186193 28186264 -73686905 + MIR SINE MIR 119 192 -70 2618 75 21 16 chr13 28186273 28186646 -73686523 - THE1C LTR MaLR 0 375 1 534 334 60 63 chr13 28186796 28187227 -73685942 + L1MEd LINE L1 12 441 -5678 279 228 19 152 chr13 28187228 28187439 -73685730 + L1MC4 LINE L1 7860 8042 0 255 277 96 11 chr13 28187797 28187891 -73685278 - MIR SINE MIR -2 260 159 445 274 59 113 chr13 28188015 28188423 -73684746 - MLT1L LTR MaLR -62 553 168 349 313 0 10 chr13 28188612 28188711 -73684458 - MIR SINE MIR -99 163 66 216 301 36 12 chr13 28189392 28189475 -73683694 + MIR SINE MIR 111 195 -67 426 302 62 17 chr13 28190724 28190903 -73682266 - MIR SINE MIR -70 192 6 2318 98 0 3 chr13 28191093 28191399 -73681770 + AluSx SINE Alu 1 305 -7 1539 134 90 60 chr13 28191555 28191854 -73681315 - AluJo SINE Alu -4 308 1 2480 71 0 0 chr13 28193040 28193334 -73679835 + AluY SINE Alu 3 296 -15 951 128 0 0 chr13 28193805 28194083 -73679086 + (TA)n Simple_repeat Simple_repeat 1 278 0 1984 132 3 3 chr13 28194083 28194370 -73678799 - AluSx SINE Alu -25 287 1 408 225 0 110 chr13 28194373 28194574 -73678595 - L1 LINE L1 -1817 4329 4151 2270 100 13 0 chr13 28194802 28195102 -73678067 - AluSx SINE Alu -7 305 2 21 0 0 0 chr13 28195178 28195199 -73677970 + AT_rich Low_complexity Low_complexity 1 21 0 783 182 0 0 chr13 28195377 28195498 -73677671 + FLAM_A SINE Alu 1 121 -12 630 247 133 0 chr13 28196426 28196576 -73676593 + FRAM SINE Alu 1 170 -6 409 164 35 17 chr13 28196613 28196729 -73676440 + L1M4 LINE L1 2894 3011 -3135 1159 228 101 68 chr13 28196793 28197349 -73675820 + L1ME2 LINE L1 5581 6154 -10 1518 180 3 40 chr13 28197672 28197972 -73675197 + AluJo SINE Alu 1 289 -23 22 0 0 0 chr13 28197973 28197995 -73675174 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 28198146 28198171 -73674998 + AT_rich Low_complexity Low_complexity 1 25 0 202 318 35 12 chr13 28198918 28199003 -73674166 - MER5A DNA MER1_type -42 147 61 549 0 0 0 chr13 28199069 28199130 -73674039 + (TG)n Simple_repeat Simple_repeat 2 62 0 423 0 0 0 chr13 28199184 28199231 -73673938 + (TG)n Simple_repeat Simple_repeat 2 48 0 2048 121 3 17 chr13 28199231 28199520 -73673649 - AluSx SINE Alu -27 285 1 1947 106 39 3 chr13 28199568 28199850 -73673319 + AluSg SINE Alu 1 292 -18 645 237 46 62 chr13 28199866 28199948 -73673221 - Charlie2a DNA MER1_type -611 2251 2169 794 106 0 0 chr13 28199948 28200061 -73673108 + L1PB3 LINE L1 6040 6152 -2 645 237 46 62 chr13 28200061 28200303 -73672866 - Charlie2a DNA MER1_type -693 2169 1932 229 247 67 45 chr13 28200345 28200434 -73672735 + MIR SINE MIR 124 214 -48 * 379 278 57 52 chr13 28200424 28200636 -73672533 - MIR SINE MIR -2 260 48 2364 81 7 0 chr13 28200695 28200991 -73672178 - AluSp SINE Alu -15 298 1 691 191 391 14 chr13 28201038 28201383 -73671786 - Charlie2a DNA MER1_type -915 1947 1473 1077 257 74 33 chr13 28201419 28202031 -73671138 - Charlie2b DNA MER1_type -2116 666 1 28 29 0 0 chr13 28203021 28203056 -73670113 + AT_rich Low_complexity Low_complexity 1 35 0 1806 159 28 10 chr13 28203403 28203693 -73669476 + AluJo SINE Alu 1 295 -17 2208 102 0 35 chr13 28203698 28204012 -73669157 + AluSx SINE Alu 10 312 0 22 56 0 0 chr13 28204697 28204733 -73668436 + AT_rich Low_complexity Low_complexity 1 36 0 2152 117 0 19 chr13 28205288 28205605 -73667564 - AluSx SINE Alu -1 311 1 2286 102 0 0 chr13 28205795 28206107 -73667062 + AluSq SINE Alu 1 312 0 1836 68 4 8 chr13 28207454 28207689 -73665480 + AluSx SINE Alu 64 297 -15 189 0 0 0 chr13 28208588 28208609 -73664560 + (GTTTG)n Simple_repeat Simple_repeat 4 24 0 405 255 122 0 chr13 28208771 28208869 -73664300 - L2 LINE L2 -1 3271 3162 406 277 164 38 chr13 28208875 28209222 -73663947 - L2 LINE L2 -49 3264 2874 209 344 0 16 chr13 28209281 28209342 -73663827 - L2 LINE L2 -182 3090 3031 1771 87 4 0 chr13 28209360 28209590 -73663579 - AluSg/x SINE Alu 0 312 82 2532 46 0 0 chr13 28209590 28209891 -73663278 - AluY SINE Alu -9 302 1 520 314 51 11 chr13 28210336 28210511 -73662658 + MER5A DNA MER1_type 8 189 0 747 183 0 8 chr13 28210521 28210652 -73662517 + AluJb SINE Alu 4 133 -179 1783 150 6 38 chr13 28211298 28211618 -73661551 + AluJo SINE Alu 1 310 -2 180 250 54 18 chr13 28212065 28212121 -73661048 - L3 LINE CR1 -586 991 934 357 179 40 168 chr13 28212583 28213057 -73660112 - MER5A DNA MER1_type 0 189 39 1985 146 17 7 chr13 28212663 28212965 -73660204 - AluSx SINE Alu -7 305 1 322 194 59 182 chr13 28212965 28213079 -73660090 + MER5A DNA MER1_type 97 185 -4 492 206 11 0 chr13 28213247 28213339 -73659830 + LTR67 LTR ERVL 92 184 -373 389 329 81 14 chr13 28213628 28213838 -73659331 + MIR SINE MIR 5 228 -34 320 195 23 46 chr13 28213945 28214020 -73659149 - MLT1K LTR MaLR -11 577 503 1458 153 71 46 chr13 28214020 28214163 -73659006 + AluJo SINE Alu 1 139 -173 2366 90 3 0 chr13 28214163 28214473 -73658696 + AluY SINE Alu 1 311 0 1458 153 71 46 chr13 28214473 28214610 -73658559 + AluJo SINE Alu 139 288 -24 320 195 23 46 chr13 28214610 28214621 -73658548 - MLT1K LTR MaLR -85 503 493 189 232 0 0 chr13 28214637 28214706 -73658463 + A-rich Low_complexity Low_complexity 1 69 0 1184 302 58 14 chr13 28214713 28215196 -73657973 - MLT1K LTR MaLR -71 517 14 278 232 29 14 chr13 28215959 28216028 -73657141 - MLT1K LTR MaLR -505 83 14 2091 133 0 0 chr13 28216231 28216525 -73656644 + AluSx SINE Alu 1 294 -18 2128 124 7 3 chr13 28216841 28217140 -73656029 + AluSx SINE Alu 1 300 -12 200 268 207 0 chr13 28217230 28217312 -73655857 - L2 LINE L2 -10 3303 3205 1807 159 0 26 chr13 28217850 28218152 -73655017 + AluJb SINE Alu 1 294 -18 2033 116 7 0 chr13 28218870 28219146 -73654023 + AluSq SINE Alu 1 278 -35 207 0 0 0 chr13 28219152 28219175 -73653994 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 263 263 137 30 chr13 28219188 28219353 -73653816 + L1 LINE L1 4813 5009 -1137 1965 124 4 0 chr13 28219363 28219637 -73653532 - AluSx SINE Alu -29 283 9 2281 104 3 0 chr13 28219773 28220072 -73653097 + AluSp SINE Alu 6 305 -8 2156 110 31 0 chr13 28220339 28220629 -73652540 - AluSg SINE Alu -9 301 3 2505 47 0 13 chr13 28221518 28221817 -73651352 + AluY SINE Alu 2 296 -15 370 209 64 27 chr13 28223545 28223655 -73649514 + MIR SINE MIR 67 180 -82 1522 188 34 13 chr13 28223822 28224120 -73649049 + AluJb SINE Alu 1 304 -8 927 227 44 0 chr13 28224178 28224407 -73648762 - MIR SINE MIR -19 243 5 1909 100 55 11 chr13 28224756 28225063 -73648106 - AluSx SINE Alu 0 319 1 670 49 0 0 chr13 28225269 28225392 -73647777 - AluY SINE Alu 0 323 201 182 265 140 25 chr13 28225414 28225614 -73647555 + L2 LINE L2 1940 2162 -1152 2358 91 3 0 chr13 28226720 28227017 -73646152 - AluSx SINE Alu -14 298 1 214 167 48 0 chr13 28227020 28227062 -73646107 + MIR3 SINE MIR 154 197 -11 1829 156 7 13 chr13 28227809 28228111 -73645058 - AluJo SINE Alu -1 311 12 594 191 28 14 chr13 28228907 28229048 -73644121 - LTR67 LTR ERVL -13 544 402 769 122 122 47 chr13 28229432 28229457 -73643712 + MER53 DNA DNA 5 27 -162 2052 146 0 3 chr13 28229457 28229752 -73643417 + AluSx SINE Alu 1 294 -18 769 122 122 47 chr13 28229752 28229898 -73643271 + MER53 DNA DNA 27 189 0 269 290 109 36 chr13 28230824 28231017 -73642152 + L2 LINE L2 2885 3091 -181 445 243 171 43 chr13 28231100 28231310 -73641859 + MLT1J LTR MaLR 40 276 -235 1819 123 4 19 chr13 28231473 28231597 -73641572 - AluSx SINE Alu -56 256 132 2169 116 17 3 chr13 28231597 28231899 -73641270 - AluSq SINE Alu -7 306 1 1819 123 4 19 chr13 28231899 28232034 -73641135 - AluSx SINE Alu -180 132 1 1562 117 0 5 chr13 28232304 28232509 -73640660 - AluSx SINE Alu -108 204 1 2279 104 3 28 chr13 28232834 28232869 -73640300 - AluSx SINE Alu -2 310 276 216 0 0 0 chr13 28232869 28232893 -73640276 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2279 104 3 28 chr13 28232893 28233175 -73639994 - AluSx SINE Alu -36 276 1 2092 133 7 3 chr13 28233427 28233720 -73639449 + AluSx SINE Alu 1 294 -18 515 272 153 40 chr13 28233725 28234026 -73639143 - L1MC4a LINE L1 -1895 5913 5579 421 271 43 29 chr13 28234523 28234663 -73638506 - L2 LINE L2 0 3313 3172 2272 185 40 2 chr13 28234692 28235136 -73638033 - L1MB3 LINE L1 -3 6180 5720 1161 129 77 138 chr13 28235155 28235332 -73637837 + AluJo SINE Alu 1 152 -160 967 111 0 183 chr13 28235332 28235567 -73637602 + 7SK RNA RNA 2 193 0 1161 129 77 138 chr13 28235567 28235700 -73637469 + AluJo SINE Alu 152 292 -20 702 160 0 38 chr13 28235921 28236052 -73637117 + AluJo/FLAM SINE Alu 1 126 -176 1293 173 0 5 chr13 28236052 28236266 -73636903 + AluJb SINE Alu 88 300 -12 2181 119 10 3 chr13 28236516 28236826 -73636343 + AluSx SINE Alu 1 312 0 2482 66 13 0 chr13 28237064 28237366 -73635803 - AluY SINE Alu -5 306 1 1784 158 3 7 chr13 28237837 28238151 -73635018 - AluJb SINE Alu 0 313 1 554 220 8 0 chr13 28238510 28238628 -73634541 + FLAM_A SINE Alu 4 122 -11 458 272 18 78 chr13 28238768 28238841 -73634328 + L2 LINE L2 2236 2312 -1002 2302 92 0 0 chr13 28238841 28239168 -73634001 - AluSq SINE Alu 0 327 1 458 272 18 78 chr13 28239168 28239310 -73633859 + L2 LINE L2 2312 2439 -875 182 289 97 26 chr13 28239309 28239423 -73633746 + L2 LINE L2 2915 3036 -236 * 933 109 92 27 chr13 28239762 28239935 -73633234 + L1M3 LINE L1 5428 5615 -556 2374 84 0 3 chr13 28239935 28240232 -73632937 + AluY SINE Alu 1 296 -15 2041 142 0 0 chr13 28240307 28240603 -73632566 - AluSx SINE Alu -16 296 1 189 94 0 0 chr13 28240608 28240640 -73632529 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 488 72 14 0 chr13 28240640 28240709 -73632460 - MER41A LTR ERV1 -86 468 399 957 105 8 0 chr13 28240756 28240880 -73632289 - FLAM_C SINE Alu -16 127 3 1513 183 84 44 chr13 28240989 28241372 -73631797 + L1MC4 LINE L1 7475 7872 -170 283 164 206 0 chr13 28241493 28241566 -73631603 + L1MC4 LINE L1 7919 8006 -36 2081 153 0 3 chr13 28241566 28241874 -73631295 - AluJb SINE Alu -5 307 1 1780 167 10 22 chr13 28241975 28242287 -73630882 + AluJb SINE Alu 1 308 -4 445 93 13 0 chr13 28242393 28242468 -73630701 + AluSp/q SINE Alu 232 307 -6 246 311 58 0 chr13 28242567 28242670 -73630499 - LTR67 LTR ERVL -18 539 431 2213 109 3 3 chr13 28243093 28243386 -73629783 + AluSx SINE Alu 6 298 -14 328 177 4 4 chr13 28243392 28243464 -73629705 - Alu SINE Alu -253 49 1 2176 134 0 3 chr13 28243809 28244122 -73629047 - AluSx SINE Alu 0 312 1 892 146 28 7 chr13 28245145 28245289 -73627880 + FRAM SINE Alu 11 157 -19 2008 127 38 0 chr13 28245289 28245580 -73627589 + AluSx SINE Alu 1 302 -10 585 214 18 0 chr13 28245705 28245817 -73627352 + FLAM_A SINE Alu 2 115 -18 1605 147 114 0 chr13 28245817 28246089 -73627080 - AluJb SINE Alu -9 303 1 1006 185 19 38 chr13 28246089 28246300 -73626869 - AluJb SINE Alu -10 302 96 3613 201 33 64 chr13 28246400 28246580 -73626589 + L1ME1 LINE L1 4847 5031 -1303 2096 115 7 33 chr13 28246580 28246884 -73626285 + AluSx SINE Alu 1 296 -16 3613 201 33 64 chr13 28246884 28246966 -73626203 + L1ME1 LINE L1 5031 5114 -1220 1422 175 48 28 chr13 28246966 28247257 -73625912 - AluJo SINE Alu -15 297 1 3613 201 33 64 chr13 28247257 28247403 -73625766 + L1ME1 LINE L1 5114 5263 -1071 2455 93 0 6 chr13 28247403 28247715 -73625454 + AluSg SINE Alu 1 310 0 3613 201 33 64 chr13 28247715 28248329 -73624840 + L1ME1 LINE L1 5263 5964 -370 1240 156 107 52 chr13 28248329 28248618 -73624551 + AluJb SINE Alu 1 305 -7 3613 201 33 64 chr13 28248618 28248978 -73624191 + L1ME1 LINE L1 5964 6334 0 2225 123 0 0 chr13 28248994 28249286 -73623883 + AluSx SINE Alu 1 292 -20 1757 141 0 11 chr13 28250232 28250502 -73622667 - AluSx SINE Alu -45 267 1 268 214 22 11 chr13 28250504 28250573 -73622596 + (TTTA)n Simple_repeat Simple_repeat 1 68 -331 1830 142 4 4 chr13 28250573 28250840 -73622329 - AluJb SINE Alu -45 267 1 268 214 22 11 chr13 28250840 28250899 -73622270 + (TTTA)n Simple_repeat Simple_repeat 68 399 0 1240 180 43 31 chr13 28251673 28251928 -73621241 - MLT1A2 LTR MaLR -92 282 25 612 256 33 56 chr13 28251960 28252175 -73620994 + LTR16A LTR ERVL 229 438 -12 299 206 75 109 chr13 28252217 28252363 -73620806 - MIR SINE MIR -51 211 77 2210 141 0 0 chr13 28252363 28252675 -73620494 + AluSx SINE Alu 1 312 0 299 206 75 109 chr13 28252675 28252715 -73620454 - MIR SINE MIR -185 77 37 357 24 0 0 chr13 28253326 28253368 -73619801 + (CA)n Simple_repeat Simple_repeat 2 43 0 26 74 0 0 chr13 28253731 28253785 -73619384 + AT_rich Low_complexity Low_complexity 1 54 0 1753 85 0 5 chr13 28254256 28254480 -73618689 - AluSc SINE Alu -4 305 83 951 301 76 22 chr13 28254674 28255082 -73618087 + L2 LINE L2 2883 3312 -1 2645 50 0 0 chr13 28255112 28255411 -73617758 + AluY SINE Alu 1 299 -12 353 284 11 11 chr13 28255414 28255509 -73617660 - MER5A DNA MER1_type -80 109 15 1791 172 7 3 chr13 28255509 28255811 -73617358 - AluJb SINE Alu -9 303 1 1935 142 0 43 chr13 28255883 28256185 -73616984 - AluSx SINE Alu -23 289 1 1439 202 73 89 chr13 28256372 28257277 -73615892 - LTR28 LTR ERV1 0 1020 1 1898 159 10 3 chr13 28257299 28257588 -73615581 - AluSx SINE Alu -21 291 1 2935 136 39 53 chr13 28257600 28258143 -73615026 - MER4D LTR ERV1 -368 535 1 305 173 25 49 chr13 28258146 28258227 -73614942 - MER92C LTR ERV1 -274 280 202 903 152 0 0 chr13 28258302 28258434 -73614735 + AluSg/x SINE Alu 165 296 -16 2064 114 11 32 chr13 28258434 28258482 -73614687 + MER4B LTR ERV1 313 360 -250 1116 166 257 4 chr13 28258482 28258723 -73614446 - AluJo SINE Alu 0 302 1 2064 114 11 32 chr13 28258723 28258879 -73614290 + MER4B LTR ERV1 360 436 -174 2012 119 57 33 chr13 28258879 28259214 -73613955 - MER61A LTR ERV1 0 343 1 2064 114 11 32 chr13 28259214 28259386 -73613783 + MER4B LTR ERV1 436 610 0 756 221 133 29 chr13 28259386 28259610 -73613559 + MER92C LTR ERV1 280 528 -26 183 42 0 0 chr13 28259610 28259634 -73613535 + (GA)n Simple_repeat Simple_repeat 2 25 0 583 245 40 44 chr13 28259638 28259820 -73613349 - MLT1F1 LTR MaLR -401 189 4 243 0 0 0 chr13 28260189 28260216 -73612953 + (A)n Simple_repeat Simple_repeat 1 27 0 2375 74 0 0 chr13 28260638 28260945 -73612224 - AluSq SINE Alu 0 307 1 1264 84 0 0 chr13 28261535 28261690 -73611479 + AluSg/x SINE Alu 130 284 -26 750 189 31 70 chr13 28261986 28262214 -73610955 + L1MC5 LINE L1 7144 7362 -599 2058 131 0 22 chr13 28262223 28262535 -73610634 + AluSx SINE Alu 1 305 -7 2108 93 29 0 chr13 28262535 28262813 -73610356 + AluSx SINE Alu 1 286 -26 330 240 10 31 chr13 28262919 28263015 -73610154 + AluSg/x SINE Alu 208 301 -1 452 301 16 27 chr13 28263784 28263970 -73609199 - MER5A DNA MER1_type 0 189 6 2094 146 3 7 chr13 28264086 28264395 -73608774 + AluJb SINE Alu 1 308 -4 227 333 40 0 chr13 28264723 28264822 -73608347 + MIR SINE MIR 141 243 -19 206 139 28 0 chr13 28265128 28265164 -73608005 + (CA)n Simple_repeat Simple_repeat 2 38 0 913 127 0 8 chr13 28265410 28265544 -73607625 - FLAM_C SINE Alu 0 133 1 809 204 18 24 chr13 28265552 28265719 -73607450 - FRAM SINE Alu 0 166 1 236 309 25 12 chr13 28265928 28266009 -73607160 - L2 LINE L2 -5 3267 3186 260 0 0 0 chr13 28266013 28266045 -73607124 + L1MA9 LINE L1 6274 6305 -7 266 306 39 105 chr13 28266059 28266422 -73606747 - L2 LINE L2 -107 3165 2827 263 289 128 50 chr13 28268128 28268308 -73604861 + L2 LINE L2 3120 3313 0 2281 108 0 10 chr13 28268891 28269197 -73603972 + AluSg SINE Alu 1 303 -7 526 119 0 48 chr13 28269545 28269629 -73603540 + AluSg/x SINE Alu 212 291 -18 944 119 0 179 chr13 28269631 28269866 -73603303 + 7SK RNA RNA 1 193 0 1977 152 0 7 chr13 28269883 28270185 -73602984 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr13 28270327 28270348 -73602821 + AT_rich Low_complexity Low_complexity 1 21 0 1038 75 8 0 chr13 28270676 28270810 -73602359 - AluSq SINE Alu -69 244 110 24 0 0 0 chr13 28271003 28271027 -73602142 + AT_rich Low_complexity Low_complexity 1 24 0 1469 162 0 0 chr13 28271085 28271314 -73601855 + AluSg SINE Alu 64 292 -18 1845 158 3 7 chr13 28271314 28271621 -73601548 - AluJo SINE Alu 0 307 2 2102 124 0 3 chr13 28271949 28272239 -73600930 - AluJb SINE Alu -23 289 1 838 270 146 39 chr13 28272401 28272880 -73600289 - L2 LINE L2 -49 3264 2744 877 264 80 8 chr13 28272891 28273130 -73600039 + MIR SINE MIR 2 257 -5 3401 248 52 22 chr13 28273136 28273700 -73599469 - L2 LINE L2 -568 2746 2140 1869 63 178 0 chr13 28273700 28273953 -73599216 + AluSp SINE Alu 1 298 -15 3401 248 52 22 chr13 28273953 28274353 -73598816 - L2 LINE L2 -1174 2140 1753 1864 168 27 0 chr13 28274353 28274651 -73598518 + AluJb SINE Alu 1 306 -6 605 249 102 23 chr13 28274672 28274849 -73598320 + MIR SINE MIR 35 225 -37 1374 272 43 26 chr13 28274857 28275320 -73597849 - MLT1E LTR MaLR 0 593 123 1434 242 117 82 chr13 28275337 28276019 -73597150 - L2 LINE L2 -1700 1614 909 414 248 19 73 chr13 28276026 28276232 -73596937 + LTR4 LTR ERV1 2 196 -400 782 227 25 35 chr13 28276407 28276689 -73596480 + LTR4 LTR ERV1 318 596 0 343 216 45 9 chr13 28276689 28276800 -73596369 - L2 LINE L2 -2401 913 799 584 303 192 2 chr13 28276884 28277306 -73595863 + MLT1K LTR MaLR 76 577 -11 346 297 216 0 chr13 28277475 28277660 -73595509 + MIR SINE MIR 3 227 -35 2144 128 0 3 chr13 28277683 28277979 -73595190 - AluSx SINE Alu -13 299 5 2033 88 81 0 chr13 28278014 28278287 -73594882 - AluSg SINE Alu -15 295 1 183 216 114 91 chr13 28278511 28278599 -73594570 - MIR SINE MIR 0 262 173 998 235 49 4 chr13 28278749 28278996 -73594173 + MIR SINE MIR 1 258 -4 260 324 39 0 chr13 28280060 28280162 -73593007 + L2 LINE L2 1803 1908 -1406 529 198 40 16 chr13 28280166 28280292 -73592877 - MLT1H LTR MaLR -2 547 419 545 229 78 42 chr13 28280362 28280554 -73592615 - MLT1H LTR MaLR -278 271 73 198 0 0 0 chr13 28280569 28280591 -73592578 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 713 97 29 0 chr13 28280592 28280695 -73592474 - U6 snRNA snRNA -1 106 1 1022 215 85 17 chr13 28280717 28281010 -73592159 + L2 LINE L2 1903 2215 -1099 1967 148 0 0 chr13 28281389 28281680 -73591489 - AluSx SINE Alu -21 291 1 854 262 55 61 chr13 28282200 28282543 -73590626 + L2 LINE L2 2946 3286 -27 1025 155 34 19 chr13 28282571 28282778 -73590391 + MER2 DNA MER2_type 1 210 -135 884 188 6 29 chr13 28282816 28282986 -73590183 - AluJo SINE Alu -146 166 1 309 258 0 0 chr13 28282995 28283061 -73590108 + MER2 DNA MER2_type 280 345 0 267 298 29 39 chr13 28283137 28283241 -73589928 + MIR SINE MIR 39 141 -67 234 343 0 29 chr13 28284277 28284382 -73588787 + MIR SINE MIR 111 212 -50 446 209 26 17 chr13 28284730 28284845 -73588324 - MER94 DNA DNA 0 134 19 2264 99 0 3 chr13 28285509 28285802 -73587367 - AluSx SINE Alu -20 292 1 790 320 84 36 chr13 28286129 28286520 -73586649 + L3 LINE CR1 845 1254 -323 519 236 174 0 chr13 28286663 28286807 -73586362 + MIR SINE MIR 2 170 -92 1956 158 0 3 chr13 28287306 28287598 -73585571 + AluSq SINE Alu 3 293 -20 2082 42 72 8 chr13 28287758 28288043 -73585126 - AluY SINE Alu 0 334 33 386 354 25 19 chr13 28288289 28288447 -73584722 + L3 LINE CR1 1009 1167 -410 1626 223 89 16 chr13 28288601 28289049 -73584120 - L1MC4 LINE L1 -1097 6945 6465 1797 187 0 10 chr13 28289548 28289853 -73583316 + AluJb SINE Alu 1 302 -10 366 222 10 10 chr13 28290846 28290945 -73582224 - Charlie8 DNA MER1_type -2223 194 96 245 217 33 0 chr13 28290980 28291040 -73582129 - MER103 DNA DNA -54 112 51 247 241 114 108 chr13 28291296 28291454 -73581715 + L2 LINE L2 3153 3311 -2 197 395 81 16 chr13 28291510 28291758 -73581411 + L2 LINE L2 2618 2881 -433 23 0 0 0 chr13 28292130 28292153 -73581016 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 28292312 28292338 -73580831 + AT_rich Low_complexity Low_complexity 1 26 0 1700 160 67 27 chr13 28292497 28292797 -73580372 + AluJb SINE Alu 1 312 0 279 280 91 23 chr13 28293864 28293996 -73579173 - L2 LINE L2 0 3313 3173 1094 123 0 0 chr13 28294031 28294177 -73578992 - AluSq/x SINE Alu -167 146 1 1984 152 15 0 chr13 28294315 28294650 -73578519 - L1PA16 LINE L1 -13 6153 5814 843 199 78 0 chr13 28294689 28294855 -73578314 - FAM SINE Alu -5 44 1 23 68 0 0 chr13 28294928 28294972 -73578197 + AT_rich Low_complexity Low_complexity 1 44 0 2393 86 3 0 chr13 28295245 28295548 -73577621 - AluSp SINE Alu -9 304 1 2423 42 3 29 chr13 28296345 28296651 -73576518 - AluY SINE Alu -13 298 1 191 190 52 17 chr13 28296900 28296958 -73576211 - L2 LINE L2 0 3313 3254 2271 116 3 0 chr13 28297033 28297336 -73575833 + AluSx SINE Alu 3 306 -6 352 271 181 8 chr13 28297963 28298096 -73575073 + MIR SINE MIR 107 262 0 816 142 47 0 chr13 28299307 28299434 -73573735 - FLAM_A SINE Alu 0 133 1 294 275 34 67 chr13 28299982 28300131 -73573038 - L2 LINE L2 -798 2516 2373 1248 263 77 40 chr13 28300191 28300895 -73572274 - L2 LINE L2 -1 3312 2567 1273 135 5 54 chr13 28300997 28301219 -73571950 - AluJo SINE Alu -101 211 1 2150 119 42 31 chr13 28301433 28301793 -73571376 + THE1B LTR MaLR 1 364 0 954 111 0 0 chr13 28302723 28302858 -73570311 - AluSx SINE Alu -9 303 169 342 68 232 4 chr13 28302868 28302937 -73570232 + AluSq/x SINE Alu 62 133 -170 1081 133 6 6 chr13 28302943 28303108 -73570061 - AluSx SINE Alu -147 165 1 231 175 0 0 chr13 28303414 28303454 -73569715 - Charlie1a DNA MER1_type -1 1454 1415 5055 196 43 29 chr13 28303485 28304702 -73568467 - Charlie1a DNA MER1_type -220 1235 2 2226 98 0 3 chr13 28304895 28305191 -73567978 + AluSq SINE Alu 1 295 -18 344 308 0 17 chr13 28305345 28305462 -73567707 - MIR SINE MIR -55 207 93 308 229 114 9 chr13 28306122 28306227 -73566942 - L1MC4 LINE L1 0 8042 7927 1566 102 0 5 chr13 28306673 28306888 -73566281 + AluSg/x SINE Alu 84 297 -13 24 32 0 0 chr13 28306935 28306966 -73566203 + AT_rich Low_complexity Low_complexity 1 31 0 1252 158 0 0 chr13 28307207 28307384 -73565785 + AluSx SINE Alu 1 177 -135 1575 135 9 0 chr13 28307402 28307632 -73565537 + AluSg/x SINE Alu 70 301 -11 1554 190 39 7 chr13 28307788 28308072 -73565097 + AluJb SINE Alu 1 293 -19 22 35 0 0 chr13 28308589 28308618 -73564551 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr13 28308646 28308668 -73564501 + (TA)n Simple_repeat Simple_repeat 2 23 0 457 186 0 0 chr13 28308668 28308738 -73564431 - AluS SINE Alu -17 294 225 625 216 22 89 chr13 28308939 28309139 -73564030 - L1MC5 LINE L1 -48 7913 7740 2454 87 0 0 chr13 28309139 28309448 -73563721 - AluSq SINE Alu -4 309 1 625 216 22 89 chr13 28309448 28309562 -73563607 - L1MC5 LINE L1 -221 7740 7620 1562 123 57 104 chr13 28310567 28310731 -73562438 - AluSx SINE Alu -10 302 159 2354 83 0 10 chr13 28310731 28311033 -73562136 - AluSc SINE Alu -10 299 1 1562 123 57 104 chr13 28311033 28311185 -73561984 - AluSx SINE Alu -153 159 1 37 0 0 0 chr13 28311531 28311568 -73561601 + AT_rich Low_complexity Low_complexity 1 37 0 735 112 9 0 chr13 28311799 28311906 -73561263 - AluSq/x SINE Alu -201 111 4 1565 139 57 60 chr13 28311912 28312280 -73560889 + MLT1B LTR MaLR 24 390 0 425 197 31 8 chr13 28312382 28312509 -73560660 - L1ME3A LINE L1 -5 6165 6036 23 33 0 0 chr13 28312739 28312769 -73560400 + AT_rich Low_complexity Low_complexity 1 30 0 1606 178 56 14 chr13 28312780 28313066 -73560103 - AluJo SINE Alu -14 298 1 2066 127 33 3 chr13 28313824 28314123 -73559046 - AluSx SINE Alu -4 308 1 2401 153 59 20 chr13 28314370 28315012 -73558157 - L1MB8 LINE L1 -9 6169 5413 2237 180 156 32 chr13 28315201 28315879 -73557290 - L1MB8 LINE L1 -845 5301 4540 3157 186 41 55 chr13 28315963 28316174 -73556995 - L1MD2 LINE L1 -1 6358 6145 243 0 0 0 chr13 28316174 28316201 -73556968 + (TG)n Simple_repeat Simple_repeat 2 28 0 3157 186 41 55 chr13 28316201 28316417 -73556752 - L1MD2 LINE L1 -214 6145 5927 2596 62 0 0 chr13 28316417 28316721 -73556448 - AluY SINE Alu -7 304 1 3157 186 41 55 chr13 28316721 28317104 -73556065 - L1MD2 LINE L1 -432 5927 5559 228 122 0 0 chr13 28317686 28317727 -73555442 + (CA)n Simple_repeat Simple_repeat 2 42 0 2198 100 3 7 chr13 28320096 28320395 -73552774 + L1PA12 LINE L1 5871 6168 0 21 71 0 0 chr13 28320487 28320529 -73552640 + AT_rich Low_complexity Low_complexity 1 42 0 208 323 0 16 chr13 28320532 28320594 -73552575 + L2 LINE L2 3248 3308 -5 1599 178 7 26 chr13 28322195 28322558 -73550611 - AluJb SINE Alu 0 357 1 1471 154 12 20 chr13 28322635 28322881 -73550288 + AluJo SINE Alu 1 244 -68 22 0 0 0 chr13 28322890 28322912 -73550257 + AT_rich Low_complexity Low_complexity 1 22 0 294 360 10 0 chr13 28322977 28323077 -73550092 - MIR SINE MIR -150 112 12 659 195 8 16 chr13 28323106 28323234 -73549935 + FLAM_A SINE Alu 4 130 -3 2604 195 21 87 chr13 28323356 28323758 -73549411 - MLT1E3 LTR MaLR 0 624 280 2374 111 0 0 chr13 28323758 28324065 -73549104 - AluSx SINE Alu -5 307 1 2604 195 21 87 chr13 28324065 28324314 -73548855 - MLT1E3 LTR MaLR -344 280 16 227 54 27 0 chr13 28325105 28325142 -73548027 + (TA)n Simple_repeat Simple_repeat 2 39 0 651 141 0 0 chr13 28325156 28325255 -73547914 + L1P5 LINE L1 5705 5803 -353 369 186 58 12 chr13 28325235 28325321 -73547848 + L1M4 LINE L1 3362 3451 -2695 * 744 221 15 36 chr13 28326123 28326318 -73546851 - L1MC5 LINE L1 -44 7917 7727 552 187 0 22 chr13 28326333 28326424 -73546745 + AluJ/FLAM SINE Alu 3 91 -221 1896 130 42 3 chr13 28326570 28326854 -73546315 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr13 28329000 28329022 -73544147 + AT_rich Low_complexity Low_complexity 1 22 0 45 104 0 0 chr13 28329199 28329363 -73543806 + AT_rich Low_complexity Low_complexity 1 164 0 35 63 0 0 chr13 28329544 28329607 -73543562 + AT_rich Low_complexity Low_complexity 1 63 0 883 272 91 33 chr13 28329765 28330356 -73542813 - L1ME LINE L1 -539 5903 5256 2015 133 9 19 chr13 28330356 28330671 -73542498 - AluSx SINE Alu 0 312 1 883 272 91 33 chr13 28330671 28330880 -73542289 - L1ME LINE L1 -1186 5256 5061 3015 165 17 4 chr13 28330924 28331398 -73541771 + Tigger7 DNA MER2_type 32 511 -222 615 276 111 42 chr13 28331461 28332087 -73541082 - L1MEd LINE L1 -4859 1567 1015 1116 225 65 98 chr13 28332323 28332781 -73540388 - MLT1H LTR MaLR -23 526 84 366 267 23 30 chr13 28332924 28333055 -73540114 + MER94 DNA DNA 5 134 0 277 281 134 61 chr13 28333421 28333898 -73539271 - HAL1b LINE L1 -252 1096 585 34 42 0 0 chr13 28334271 28334319 -73538850 + AT_rich Low_complexity Low_complexity 1 48 0 859 144 7 7 chr13 28334463 28334602 -73538567 + AluJb SINE Alu 3 141 -171 33 66 0 0 chr13 28335009 28335070 -73538099 + AT_rich Low_complexity Low_complexity 1 61 0 1274 133 225 4 chr13 28335741 28335981 -73537188 - AluSg1 SINE Alu -16 293 1 386 254 231 8 chr13 28336691 28336825 -73536344 + MIR SINE MIR 2 165 -97 854 268 131 40 chr13 28336850 28337279 -73535890 - MLT1J LTR MaLR -43 468 1 234 260 10 73 chr13 28337281 28337377 -73535792 + MIR SINE MIR 161 250 -12 1741 150 11 11 chr13 28337432 28337706 -73535463 - AluSx SINE Alu -4 308 35 914 121 8 8 chr13 28337982 28338114 -73535055 - FRAM SINE Alu -21 155 24 1585 162 20 40 chr13 28338402 28338704 -73534465 - AluJb SINE Alu -16 296 1 906 135 195 0 chr13 28339127 28339312 -73533857 + L1MA8 LINE L1 6066 6286 -5 2203 118 0 0 chr13 28339562 28339858 -73533311 - AluSx SINE Alu -16 296 1 2222 108 0 16 chr13 28339860 28340174 -73532995 - AluSg SINE Alu -1 309 1 24 0 0 0 chr13 28340201 28340225 -73532944 + AT_rich Low_complexity Low_complexity 1 24 0 883 146 0 0 chr13 28340691 28340814 -73532355 + FLAM_C SINE Alu 1 123 -20 38 0 0 0 chr13 28340815 28340853 -73532316 + AT_rich Low_complexity Low_complexity 1 38 0 1994 142 10 3 chr13 28341493 28341789 -73531380 - AluSx SINE Alu -14 298 1 489 279 49 44 chr13 28342144 28342348 -73530821 - MIR SINE MIR -50 212 8 6028 62 11 1 chr13 28342492 28343219 -73529950 - L1PA6 LINE L1 -1 6153 5420 224 333 82 53 chr13 28343738 28343945 -73529224 + L2 LINE L2 2845 3057 -215 296 250 188 0 chr13 28344079 28344191 -73528978 - MER112 DNA MER1_type -97 163 31 248 277 67 42 chr13 28344237 28344284 -73528885 + L2 LINE L2 3151 3195 -77 291 93 0 0 chr13 28344284 28344327 -73528842 + (CA)n Simple_repeat Simple_repeat 2 44 0 248 277 67 42 chr13 28344327 28344398 -73528771 + L2 LINE L2 3195 3272 0 505 257 107 27 chr13 28344875 28345062 -73528107 + MIR SINE MIR 42 243 -19 216 232 111 61 chr13 28345692 28345791 -73527378 + MIR SINE MIR 41 144 -64 722 240 36 58 chr13 28347065 28347283 -73525886 - MLT1A1 LTR MaLR 0 374 160 2268 97 7 16 chr13 28347283 28347593 -73525576 - AluSq SINE Alu -6 307 1 369 0 0 0 chr13 28347599 28347640 -73525529 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1510 144 67 42 chr13 28347699 28347983 -73525186 - AluJo SINE Alu 0 312 22 928 150 6 12 chr13 28348012 28348172 -73524997 - MLT1A1 LTR MaLR -206 159 1 257 265 36 0 chr13 28348301 28348384 -73524785 - L2 LINE L2 -111 3202 3117 2123 106 3 7 chr13 28348754 28349047 -73524122 + AluSx SINE Alu 1 292 -20 232 177 21 125 chr13 28349048 28349144 -73524025 + L1MCa LINE L1 1995 2080 -4346 492 297 53 65 chr13 28349157 28349465 -73523704 + L1MCa LINE L1 2434 2739 -3687 2301 98 166 5 chr13 28349465 28349832 -73523337 - MSTA LTR MaLR 0 428 3 492 297 53 65 chr13 28349832 28349863 -73523306 + L1MCa LINE L1 2739 2769 -3657 1301 79 6 0 chr13 28349903 28350067 -73523102 - AluSp SINE Alu -13 300 136 647 83 9 46 chr13 28350068 28350177 -73522992 + MER11A LTR ERVK 1161 1265 -1 514 235 10 0 chr13 28350201 28350299 -73522870 - L2 LINE L2 -6 3307 3209 392 270 59 2 chr13 28350299 28350447 -73522722 + L1ME1 LINE L1 5940 6104 -74 322 306 118 12 chr13 28350453 28350698 -73522471 - L2 LINE L2 -108 3205 2935 397 289 93 61 chr13 28350735 28350753 -73522416 + L1MCa LINE L1 3352 3368 -3058 2242 112 7 0 chr13 28350753 28351056 -73522113 + AluSg SINE Alu 1 305 -5 397 289 93 61 chr13 28351056 28351303 -73521866 + L1MCa LINE L1 3368 3605 -2821 2440 80 0 0 chr13 28351303 28351605 -73521564 + AluSc SINE Alu 1 302 -7 397 289 93 61 chr13 28351605 28352012 -73521157 + L1MCa LINE L1 3605 4047 -2379 2440 90 0 0 chr13 28352048 28352349 -73520820 + AluSc SINE Alu 1 301 -8 1146 125 0 28 chr13 28352349 28352516 -73520653 + AluSg/x SINE Alu 134 297 -13 1571 195 42 0 chr13 28352585 28352872 -73520297 + AluJb SINE Alu 1 299 -13 848 237 31 77 chr13 28352952 28353266 -73519903 + L1MC4a LINE L1 5543 5694 -468 2288 99 7 3 chr13 28353266 28353569 -73519600 + AluSq SINE Alu 1 304 -9 848 237 31 77 chr13 28353569 28353684 -73519485 + L1MC4a LINE L1 5694 5813 -349 1776 140 51 10 chr13 28354378 28354670 -73518499 + AluSx SINE Alu 1 304 -8 212 373 27 27 chr13 28354758 28354908 -73518261 - L2 LINE L2 -498 2816 2667 224 0 65 0 chr13 28355848 28355879 -73517290 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 818 169 0 15 chr13 28356058 28356188 -73516981 - FLAM_C SINE Alu -3 130 3 1013 223 125 75 chr13 28357184 28357386 -73515783 + MLT1D LTR MaLR 1 191 -314 2094 111 20 7 chr13 28357386 28357683 -73515486 + AluSx SINE Alu 1 301 -11 1013 223 125 75 chr13 28357683 28357710 -73515459 + MLT1D LTR MaLR 191 215 -290 2119 128 3 0 chr13 28357710 28358008 -73515161 + AluSx SINE Alu 1 299 -13 1013 223 125 75 chr13 28358008 28358258 -73514911 + MLT1D LTR MaLR 215 505 0 275 304 43 9 chr13 28358258 28358373 -73514796 + L2 LINE L2 2966 3084 -188 2146 109 0 0 chr13 28358950 28359268 -73513901 + AluSx SINE Alu 1 318 0 276 308 78 67 chr13 28359727 28359845 -73513324 + L1ME LINE L1 5531 5646 -475 1895 164 3 3 chr13 28359845 28360132 -73513037 + AluJb SINE Alu 1 287 -25 276 308 78 67 chr13 28360132 28360357 -73512812 + L1ME LINE L1 5646 5878 -243 333 295 75 75 chr13 28360773 28360837 -73512332 + L2 LINE L2 2650 2713 -601 2046 137 6 10 chr13 28360837 28361150 -73512019 + AluSx SINE Alu 1 312 0 333 295 75 75 chr13 28361150 28361353 -73511816 + L2 LINE L2 2712 2917 -397 1915 176 52 55 chr13 28361782 28361898 -73511271 - MLT1C LTR MaLR -4 463 348 2265 86 0 0 chr13 28361898 28362201 -73510968 + AluSg SINE Alu 1 303 0 1915 176 52 55 chr13 28362201 28362542 -73510627 - MLT1C LTR MaLR -119 348 6 1521 133 4 9 chr13 28362612 28362837 -73510332 - AluSx SINE Alu -88 224 1 423 200 0 0 chr13 28362887 28362962 -73510207 - MLT1A1 LTR MaLR 0 365 291 1011 126 0 0 chr13 28362962 28363097 -73510072 + AluSq/x SINE Alu 1 135 -177 2100 104 3 42 chr13 28363097 28363406 -73509763 + AluSg SINE Alu 1 297 -13 1190 246 63 0 chr13 28363406 28363674 -73509495 - MLT1A1 LTR MaLR -79 286 2 1428 192 23 23 chr13 28364043 28364203 -73508966 - AluJo SINE Alu -5 307 145 2090 120 23 3 chr13 28364203 28364502 -73508667 - AluSg SINE Alu -5 305 1 1428 192 23 23 chr13 28364502 28364643 -73508526 - AluJo SINE Alu -166 146 6 1838 147 3 11 chr13 28364912 28365227 -73507942 - AluSx SINE Alu 0 313 1 362 193 67 80 chr13 28365328 28365478 -73507691 + L1MC5 LINE L1 7507 7654 -307 863 85 0 0 chr13 28365478 28365584 -73507585 + AluSp SINE Alu 1 106 -207 25 51 0 0 chr13 28366625 28366664 -73506505 + AT_rich Low_complexity Low_complexity 1 39 0 1934 136 0 33 chr13 28368322 28368624 -73504545 + AluSx SINE Alu 1 292 -20 1786 156 3 35 chr13 28368627 28368942 -73504227 + AluJb SINE Alu 1 305 -7 245 299 9 169 chr13 28369404 28369635 -73503534 + L2 LINE L2 3027 3220 -52 2378 92 0 0 chr13 28369714 28370017 -73503152 + AluSg SINE Alu 2 304 -6 789 241 64 15 chr13 28370137 28370512 -73502657 + LTR16A LTR ERVL 7 450 0 2274 92 0 25 chr13 28370641 28370958 -73502211 + AluSc SINE Alu 1 309 0 299 284 23 0 chr13 28371034 28371122 -73502047 + MIR SINE MIR 90 179 -83 745 184 0 0 chr13 28371283 28371397 -73501772 + AluJo/FLAM SINE Alu 2 115 -187 2124 133 0 3 chr13 28371398 28371707 -73501462 + AluSg SINE Alu 1 308 -2 1029 110 0 85 chr13 28371707 28371754 -73501415 + AluSq/x SINE Alu 5 150 -162 739 87 0 0 chr13 28371754 28371846 -73501323 - AluS SINE Alu -220 93 2 1030 119 0 179 chr13 28371864 28372099 -73501070 - 7SK RNA RNA 0 193 1 522 143 0 48 chr13 28372101 28372185 -73500984 - AluSg/x SINE Alu -18 291 212 22 0 0 0 chr13 28373160 28373182 -73499987 + AT_rich Low_complexity Low_complexity 1 22 0 37 0 0 0 chr13 28375718 28375755 -73497414 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr13 28376004 28376026 -73497143 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 808 169 0 0 chr13 28376307 28376431 -73496738 - AluJb SINE Alu -188 124 1 183 381 79 8 chr13 28376701 28376827 -73496342 - MIR3 SINE MIR -38 170 36 1891 147 0 39 chr13 28377690 28378002 -73495167 + AluSx SINE Alu 1 300 -12 565 195 47 13 chr13 28380486 28380635 -73492534 + MER104 DNA Tc2 25 178 -2 23 33 0 0 chr13 28380775 28380805 -73492364 + AT_rich Low_complexity Low_complexity 1 30 0 1310 167 126 15 chr13 28380805 28381068 -73492101 - AluJo SINE Alu -19 293 2 426 244 106 8 chr13 28381926 28382049 -73491120 - MIR3 SINE MIR -23 185 51 263 183 33 50 chr13 28382176 28382236 -73490933 - MLT1K LTR MaLR -10 578 520 2163 103 0 0 chr13 28382580 28382881 -73490288 + AluSx SINE Alu 1 301 0 1962 120 0 31 chr13 28383146 28383461 -73489708 + AluSx SINE Alu 1 306 0 1643 173 0 28 chr13 28383577 28383860 -73489309 - AluSx SINE Alu -37 275 1 654 193 0 52 chr13 28384369 28384504 -73488665 + Charlie1 DNA MER1_type 1 128 -2633 286 225 67 11 chr13 28384501 28384590 -73488579 + Charlie1 DNA MER1_type 2623 2716 -45 * 574 123 38 0 chr13 28384625 28384731 -73488438 - L1MA7 LINE L1 -2 6289 6180 264 288 81 9 chr13 28384766 28384877 -73488292 + L2 LINE L2 3193 3311 -2 23 33 0 0 chr13 28385005 28385035 -73488134 + AT_rich Low_complexity Low_complexity 1 30 0 1760 124 161 24 chr13 28385588 28385918 -73487251 - THE1C LTR MaLR 0 375 1 2172 112 3 3 chr13 28385990 28386293 -73486876 - AluSc SINE Alu -6 303 1 26 50 0 0 chr13 28386516 28386556 -73486613 + AT_rich Low_complexity Low_complexity 1 40 0 402 290 57 0 chr13 28386820 28386944 -73486225 + L2 LINE L2 3137 3267 -5 387 41 0 0 chr13 28387470 28387519 -73485650 + (CA)n Simple_repeat Simple_repeat 1 49 0 1356 189 128 4 chr13 28388350 28388615 -73484554 + AluSx SINE Alu 1 298 -14 377 321 0 9 chr13 28388931 28389040 -73484129 - L2 LINE L2 -19 3294 3187 1046 131 199 0 chr13 28389672 28389903 -73483266 + Tigger3(Golem) DNA MER2_type 54 3029 0 2068 255 83 65 chr13 28390144 28391195 -73481974 + L2 LINE L2 2246 3313 0 213 354 157 22 chr13 28391181 28391500 -73481669 - L2 LINE L2 -450 2864 2503 * 22 35 0 0 chr13 28391837 28391866 -73481303 + AT_rich Low_complexity Low_complexity 1 29 0 937 134 0 0 chr13 28391900 28392044 -73481125 - FLAM_C SINE Alu 0 144 1 2205 99 7 0 chr13 28392062 28392356 -73480813 - AluSp SINE Alu -12 301 6 290 138 17 0 chr13 28392432 28392490 -73480679 + (CA)n Simple_repeat Simple_repeat 2 60 0 958 137 6 19 chr13 28392900 28393216 -73479953 - AluSq SINE Alu 0 439 126 2051 137 0 0 chr13 28393217 28393517 -73479652 - AluSx SINE Alu -12 300 1 234 0 0 0 chr13 28393520 28393546 -73479623 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2288 97 0 3 chr13 28393550 28393850 -73479319 - AluY SINE Alu -8 303 5 226 236 36 0 chr13 28394046 28394101 -73479068 + L2 LINE L2 3179 3235 -78 238 203 17 34 chr13 28394101 28394160 -73479009 + CT-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr13 28394247 28394268 -73478901 + AT_rich Low_complexity Low_complexity 1 21 0 328 42 21 0 chr13 28395668 28395716 -73477453 - AluY SINE Alu -253 49 1 1778 126 49 11 chr13 28395716 28395881 -73477288 - AluSx SINE Alu -15 297 140 2143 78 24 3 chr13 28395881 28395895 -73477274 - AluSc SINE Alu -10 299 287 486 0 0 0 chr13 28395895 28395949 -73477220 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 2143 78 24 3 chr13 28395949 28396227 -73476942 - AluSc SINE Alu -22 287 1 315 0 0 0 chr13 28396227 28396262 -73476907 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 1778 126 49 11 chr13 28396262 28396381 -73476788 - AluSx SINE Alu -171 141 1 1171 176 24 0 chr13 28396444 28396613 -73476556 - AluSg/x SINE Alu -8 302 126 207 0 0 0 chr13 28396613 28396636 -73476533 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1171 176 24 0 chr13 28396636 28396671 -73476498 - AluSg/x SINE Alu -184 126 93 258 158 0 0 chr13 28396677 28396715 -73476454 - Alu SINE Alu -265 38 1 181 294 188 55 chr13 28396962 28397055 -73476114 - L2 LINE L2 -218 3095 3016 2127 112 0 53 chr13 28397055 28397377 -73475792 + AluSg SINE Alu 1 305 -5 181 294 188 55 chr13 28397377 28397501 -73475668 - L2 LINE L2 -297 3016 2849 1844 117 30 43 chr13 28397532 28397653 -73475516 + AluSx SINE Alu 1 122 -190 2671 3 0 0 chr13 28397653 28397936 -73475233 + AluYa5 SINE Alu 16 298 -13 1844 117 30 43 chr13 28397936 28398113 -73475056 + AluSx SINE Alu 122 295 -17 237 65 0 0 chr13 28398113 28398144 -73475025 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 288 258 0 15 chr13 28398681 28398747 -73474422 + GA-rich Low_complexity Low_complexity 3 67 0 26 30 0 0 chr13 28399106 28399139 -73474030 + AT_rich Low_complexity Low_complexity 1 33 0 927 134 0 0 chr13 28399297 28399439 -73473730 + L1PA14 LINE L1 6019 6160 -1 1084 198 78 83 chr13 28399502 28399532 -73473637 - L1MC5 LINE L1 -370 7591 7562 4109 108 11 0 chr13 28399532 28400080 -73473089 + MER41A LTR ERV1 1 554 0 1084 198 78 83 chr13 28400080 28400444 -73472725 - L1MC5 LINE L1 -399 7562 7199 1763 167 27 10 chr13 28400460 28400760 -73472409 + AluJb SINE Alu 1 305 -7 2420 68 22 19 chr13 28401052 28401363 -73471806 + AluSx SINE Alu 1 312 0 2346 113 0 0 chr13 28401375 28401684 -73471485 + AluSq SINE Alu 1 309 -4 1781 120 50 14 chr13 28401752 28401884 -73471285 + AluSx SINE Alu 1 127 -185 2047 103 17 0 chr13 28401884 28402174 -73470995 + AluSx SINE Alu 1 295 -17 1781 120 50 14 chr13 28402174 28402324 -73470845 + AluSx SINE Alu 127 293 -19 579 94 19 19 chr13 28402341 28402447 -73470722 + (GGAA)n Simple_repeat Simple_repeat 1 106 0 185 133 0 0 chr13 28402579 28402609 -73470560 + MER5C DNA MER1_type 78 107 -217 608 126 63 0 chr13 28402640 28402735 -73470434 + AluY SINE Alu 203 303 -8 728 190 26 65 chr13 28402759 28402955 -73470214 + MER5C DNA MER1_type 102 289 -35 2124 118 3 25 chr13 28402955 28403270 -73469899 + AluSx SINE Alu 1 308 -4 728 190 26 65 chr13 28403270 28403305 -73469864 + MER5C DNA MER1_type 289 324 0 1130 133 61 0 chr13 28403500 28403665 -73469504 - AluSx SINE Alu -137 175 1 2390 197 28 71 chr13 28403776 28404355 -73468814 + MLT2B3 LTR ERVL 1 554 0 2465 57 0 13 chr13 28404376 28404675 -73468494 - AluY SINE Alu -16 295 1 1484 216 65 38 chr13 28404841 28405286 -73467883 + HAL1 LINE L1 1207 1663 -844 1824 176 116 51 chr13 28405332 28405786 -73467383 - MLT2B1 LTR ERVL -31 523 1 585 258 56 52 chr13 28405786 28406019 -73467150 - L2 LINE L2 -27 3286 3053 1166 83 0 0 chr13 28406019 28406163 -73467006 + AluSq/x SINE Alu 1 144 -168 2388 84 10 0 chr13 28406163 28406462 -73466707 + AluSg SINE Alu 1 302 -8 1649 93 32 0 chr13 28406787 28407003 -73466166 - AluSq SINE Alu -65 248 26 1744 169 3 29 chr13 28407048 28407355 -73465814 - AluJo SINE Alu -13 299 1 1840 109 11 8 chr13 28407363 28407649 -73465520 - AluSc SINE Alu 0 303 17 590 125 0 0 chr13 28407653 28407733 -73465436 + AluSg/x SINE Alu 215 294 -16 2392 81 0 0 chr13 28407770 28408066 -73465103 - AluY SINE Alu -15 296 1 2149 77 4 0 chr13 28408852 28409111 -73464058 + AluSp SINE Alu 31 290 -23 1113 160 50 178 chr13 28410266 28410575 -73462594 + L1MC/D LINE L1 5217 5431 -1021 2052 120 0 7 chr13 28410575 28410874 -73462295 - AluSx SINE Alu -15 297 1 1113 160 50 178 chr13 28410874 28411120 -73462049 + L1MC/D LINE L1 5431 5707 -745 1408 179 10 66 chr13 28411121 28411307 -73461862 - AluSq SINE Alu 0 320 158 2526 65 0 7 chr13 28411307 28411616 -73461553 - AluSg1 SINE Alu -2 307 1 1408 179 10 66 chr13 28411616 28411766 -73461403 - AluSq SINE Alu -162 158 1 1383 64 0 12 chr13 28412046 28412219 -73460950 - AluSg/x SINE Alu -13 297 127 1255 175 51 78 chr13 28412703 28412714 -73460455 - L1MB8 LINE L1 -34 6150 6140 2206 112 0 10 chr13 28412714 28413019 -73460150 - AluY SINE Alu -9 302 1 1255 175 51 78 chr13 28413019 28413049 -73460120 - L1MB8 LINE L1 -44 6140 6111 1434 166 121 11 chr13 28413049 28413314 -73459855 + AluJb SINE Alu 1 294 -18 1255 175 51 78 chr13 28413314 28413603 -73459566 - L1MB8 LINE L1 -73 6111 5828 461 214 56 0 chr13 28413603 28413692 -73459477 + MER2 DNA MER2_type 1 94 -251 207 0 0 0 chr13 28413692 28413715 -73459454 + (TTA)n Simple_repeat Simple_repeat 2 24 0 5500 42 0 0 chr13 28413715 28414357 -73458812 - L1PA5 LINE L1 -22 6132 5491 1050 184 90 30 chr13 28414357 28414590 -73458579 + MER2 DNA MER2_type 99 345 0 1093 176 67 13 chr13 28414590 28414829 -73458340 - L1MB8 LINE L1 -355 5829 5578 2203 103 0 13 chr13 28414829 28415130 -73458039 - AluSq SINE Alu -16 297 1 2706 126 62 2 chr13 28415575 28415979 -73457190 - MSTA LTR MaLR 0 428 1 2321 110 3 0 chr13 28417200 28417510 -73455659 - AluSx SINE Alu 0 312 2 237 246 0 31 chr13 28417580 28417645 -73455524 + L2 LINE L2 3210 3272 0 2074 105 11 0 chr13 28418014 28418291 -73454878 + AluSp SINE Alu 1 280 -33 336 322 208 5 chr13 28418430 28418632 -73454537 - L2 LINE L2 -218 3054 2812 420 250 100 31 chr13 28419932 28420092 -73453077 - MER5A DNA MER1_type -12 177 7 367 110 16 12 chr13 28420303 28420377 -73452792 + AluS SINE Alu 1 59 -244 190 333 204 0 chr13 28420757 28420850 -73452319 - L2 LINE L2 -7 3265 3154 724 175 25 8 chr13 28420960 28421080 -73452089 + AluJ SINE Alu 2 123 -189 904 170 19 22 chr13 28421129 28421372 -73451797 + AluJ SINE Alu 104 309 -3 299 310 60 0 chr13 28422973 28423073 -73450096 - L2 LINE L2 -9 3304 3199 608 286 11 27 chr13 28423079 28423264 -73449905 - MER5A DNA MER1_type -1 188 7 943 143 54 24 chr13 28423552 28423720 -73449449 + AluSq SINE Alu 134 306 -7 650 300 112 36 chr13 28424478 28424971 -73448198 - L1M4 LINE L1 -1250 4896 4367 1336 146 5 41 chr13 28424976 28425195 -73447974 + AluJb SINE Alu 84 294 -18 249 180 81 10 chr13 28425534 28425630 -73447539 + L1MA9 LINE L1 6213 6333 -1 264 48 0 0 chr13 28426367 28426409 -73446760 - AluSp/q SINE Alu -3 300 259 2308 97 7 0 chr13 28426753 28427052 -73446117 - AluSp SINE Alu -12 301 1 1520 88 0 5 chr13 28427073 28427265 -73445904 - AluSq SINE Alu -122 191 1 2309 107 0 7 chr13 28428016 28428325 -73444844 + AluSx SINE Alu 1 307 -5 2299 103 3 7 chr13 28429176 28429527 -73443642 - AluSg SINE Alu 0 350 1 2051 144 3 26 chr13 28430463 28430775 -73442394 + AluJo SINE Alu 1 305 -7 821 211 68 0 chr13 28431224 28431385 -73441784 + FAM SINE Alu 1 172 -3 1960 161 3 0 chr13 28431750 28432054 -73441115 + AluJb SINE Alu 1 305 -7 26 50 0 0 chr13 28432681 28432721 -73440448 + AT_rich Low_complexity Low_complexity 1 40 0 2291 86 23 7 chr13 28432888 28433190 -73439979 + AluSp SINE Alu 7 313 0 32 26 0 0 chr13 28433374 28433413 -73439756 + AT_rich Low_complexity Low_complexity 1 39 0 2048 117 3 49 chr13 28433698 28434023 -73439146 - AluSx SINE Alu -2 310 1 393 22 0 0 chr13 28434602 28434648 -73438521 + (CA)n Simple_repeat Simple_repeat 1 46 0 416 306 166 5 chr13 28435607 28435806 -73437363 - MIR SINE MIR 0 262 32 1883 154 0 3 chr13 28436067 28436373 -73436796 - AluSx SINE Alu 0 305 1 2513 83 3 0 chr13 28436781 28437093 -73436076 + AluSp SINE Alu 1 313 0 203 337 36 12 chr13 28437995 28438078 -73435091 + MIR SINE MIR 42 126 -82 234 0 0 0 chr13 28438220 28438246 -73434923 + (T)n Simple_repeat Simple_repeat 1 26 0 2284 110 0 0 chr13 28438664 28438964 -73434205 + AluSq SINE Alu 1 300 -13 1585 163 3 72 chr13 28438978 28439297 -73433872 + AluJb SINE Alu 3 299 -13 198 0 0 0 chr13 28439303 28439325 -73433844 + (TA)n Simple_repeat Simple_repeat 2 23 0 479 254 30 66 chr13 28439331 28439528 -73433641 + MER102b DNA MER1_type 149 338 -3 1007 163 58 0 chr13 28439533 28439723 -73433446 + MER3 DNA MER1_type 4 204 -5 192 265 217 24 chr13 28439925 28440008 -73433161 - L2 LINE L2 -18 3295 3197 222 37 0 0 chr13 28440372 28440399 -73432770 + (T)n Simple_repeat Simple_repeat 1 27 0 196 304 0 0 chr13 28440882 28440938 -73432231 - L2 LINE L2 0 3313 3258 1032 143 9 67 chr13 28441199 28441337 -73431832 + MER2 DNA MER2_type 1 123 -222 1854 144 37 18 chr13 28441337 28441664 -73431505 + MER1B DNA MER1_type 1 333 -4 1032 143 9 67 chr13 28441664 28441748 -73431421 + MER2 DNA MER2_type 123 210 -135 2306 104 0 0 chr13 28441780 28442079 -73431090 - AluSx SINE Alu -13 299 1 243 320 0 0 chr13 28442088 28442166 -73431003 + MER2 DNA MER2_type 268 345 0 253 242 21 63 chr13 28442471 28442566 -73430603 + MIR SINE MIR 172 262 0 2170 107 31 3 chr13 28442790 28443081 -73430088 - AluSx SINE Alu -13 299 1 2303 117 17 47 chr13 28443418 28443785 -73429384 - L1PB1 LINE L1 0 6151 5796 363 44 0 0 chr13 28443785 28443830 -73429339 + (TA)n Simple_repeat Simple_repeat 2 46 0 2303 117 17 47 chr13 28443830 28443865 -73429304 - L1PB1 LINE L1 -355 5796 5761 543 279 33 16 chr13 28443887 28444070 -73429099 + AluY SINE Alu 110 295 -16 1529 121 14 5 chr13 28444317 28444532 -73428637 - AluSc SINE Alu -92 217 1 2187 118 0 0 chr13 28444697 28444986 -73428183 - AluSg SINE Alu -21 289 1 241 91 18 18 chr13 28445241 28445296 -73427873 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 2411 82 0 13 chr13 28445302 28445619 -73427550 - AluSq SINE Alu 0 313 1 24 53 0 0 chr13 28446196 28446234 -73426935 + AT_rich Low_complexity Low_complexity 1 38 0 1975 136 37 0 chr13 28446895 28447189 -73425980 - AluSx SINE Alu -7 305 1 333 286 13 0 chr13 28447375 28447452 -73425717 + L2 LINE L2 3234 3311 -2 1126 138 37 43 chr13 28448993 28449181 -73423988 - AluJb SINE Alu -19 293 107 348 177 0 0 chr13 28449214 28449276 -73423893 + MER3 DNA MER1_type 1 62 -147 1869 178 15 32 chr13 28449940 28450340 -73422829 + Tigger6 DNA MER2_type 1205 1597 0 2191 196 16 64 chr13 28450342 28450637 -73422532 + MER44D DNA MER2_type 1 311 -2176 2180 66 43 26 chr13 28450637 28450940 -73422229 + AluY SINE Alu 1 308 -3 2191 196 16 64 chr13 28450940 28451222 -73421947 + MER44D DNA MER2_type 311 605 0 619 268 142 0 chr13 28451316 28451521 -73421648 - MIR SINE MIR -27 235 2 2416 88 3 0 chr13 28451728 28452034 -73421135 + AluSq SINE Alu 1 307 -6 528 267 79 0 chr13 28452725 28452927 -73420242 + L1ME LINE L1 5559 5776 -345 29 0 0 0 chr13 28454515 28454544 -73418625 + AT_rich Low_complexity Low_complexity 1 29 0 967 261 157 15 chr13 28454576 28455036 -73418133 + Charlie7 DNA MER1_type 115 639 -1973 277 247 12 12 chr13 28455037 28455118 -73418051 - LTR33A LTR ERVL -4 519 439 302 270 0 43 chr13 28455387 28455502 -73417667 + Charlie7 DNA MER1_type 641 750 -1862 395 293 93 20 chr13 28455925 28455987 -73417182 - MER5B DNA MER1_type 0 178 122 2343 107 3 0 chr13 28455987 28456295 -73416874 + AluSq SINE Alu 1 309 -4 395 293 93 20 chr13 28456295 28456382 -73416787 - MER5B DNA MER1_type -56 122 18 1437 79 0 3 chr13 28456491 28456732 -73416437 - AluY SINE Alu -3 308 1 912 153 6 62 chr13 28457580 28457757 -73415412 + AluJo SINE Alu 1 167 -145 1706 86 5 0 chr13 28457758 28457978 -73415191 + AluY SINE Alu 72 292 -19 2267 109 0 0 chr13 28457986 28458289 -73414880 + AluY SINE Alu 1 303 -8 1728 197 0 7 chr13 28458931 28459220 -73413949 + AluJo SINE Alu 1 287 -25 1706 160 32 0 chr13 28459278 28459559 -73413610 - AluJb SINE Alu -22 290 1 204 67 0 0 chr13 28459564 28459594 -73413575 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1574 154 71 11 chr13 28459600 28459866 -73413303 - AluJo SINE Alu -30 282 1 29 0 0 0 chr13 28459945 28459974 -73413195 + AT_rich Low_complexity Low_complexity 1 29 0 2530 51 0 3 chr13 28460072 28460368 -73412801 - AluY SINE Alu -16 295 1 553 146 0 3 chr13 28460404 28460521 -73412648 + LTR24 LTR ERV1 350 467 0 26 0 0 0 chr13 28461087 28461113 -73412056 + AT_rich Low_complexity Low_complexity 1 26 0 1906 124 54 10 chr13 28461113 28461411 -73411758 - AluSx SINE Alu -1 311 1 2455 81 0 0 chr13 28461819 28462114 -73411055 + AluSg SINE Alu 1 295 -15 670 131 0 0 chr13 28463709 28463808 -73409361 + AluS SINE Alu 4 102 -211 1547 133 19 8 chr13 28463945 28464209 -73408960 + AluSq SINE Alu 36 302 -11 180 0 0 0 chr13 28464851 28464871 -73408298 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 28465715 28465736 -73407433 + AT_rich Low_complexity Low_complexity 1 21 0 304 314 50 0 chr13 28466676 28466771 -73406398 + MIR SINE MIR 7 106 -102 2251 110 7 0 chr13 28466871 28467170 -73405999 - AluSq SINE Alu -12 301 1 1716 159 212 17 chr13 28467356 28467714 -73405455 - MSTC LTR MaLR 0 428 1 2359 105 0 0 chr13 28468022 28468327 -73404842 - AluSq SINE Alu -8 305 1 2068 107 0 17 chr13 28470919 28471231 -73401938 - AluSx SINE Alu 0 307 1 2211 92 7 3 chr13 28471470 28471764 -73401405 - AluY SINE Alu -16 295 1 2036 122 4 0 chr13 28471857 28472135 -73401034 + AluSg SINE Alu 1 279 -31 1440 91 0 11 chr13 28472206 28472393 -73400776 - AluSp SINE Alu -17 296 112 1069 74 0 47 chr13 28472530 28472543 -73400626 - AluSg SINE Alu -168 142 130 2109 109 20 0 chr13 28472543 28472837 -73400332 - AluSp SINE Alu -13 300 1 1069 74 0 47 chr13 28472837 28472972 -73400197 - AluSg SINE Alu -180 130 1 452 208 0 10 chr13 28472973 28473074 -73400095 + L1ME1 LINE L1 5698 5797 -369 578 242 224 9 chr13 28473079 28473298 -73399871 + L1ME1 LINE L1 5876 6141 -25 1936 122 14 0 chr13 28473321 28473607 -73399562 + AluSx SINE Alu 3 292 -20 233 275 88 55 chr13 28473994 28474091 -73399078 + L1MC/D LINE L1 5725 5817 -1991 2239 78 7 0 chr13 28474091 28474384 -73398785 + AluSx SINE Alu 1 295 -17 233 275 88 55 chr13 28474384 28474468 -73398701 + L1MC/D LINE L1 5817 5912 -1896 2042 105 16 10 chr13 28475276 28475582 -73397587 + AluY SINE Alu 1 308 -3 1793 151 3 3 chr13 28476795 28477079 -73396090 + AluJo SINE Alu 3 286 -26 1145 186 46 8 chr13 28477085 28477322 -73395847 + AluSx SINE Alu 48 293 -19 1439 145 0 40 chr13 28477992 28478240 -73394929 - AluJb SINE Alu -64 248 11 213 269 283 14 chr13 28478470 28478615 -73394554 + MIR SINE MIR 76 259 -3 2033 114 7 3 chr13 28479077 28479374 -73393795 + AluSq SINE Alu 1 298 -15 864 103 0 29 chr13 28479377 28479513 -73393656 + AluSg/x SINE Alu 180 311 -1 1573 154 116 16 chr13 28479873 28480191 -73392978 - MLT1A1 LTR MaLR 0 365 16 2228 100 0 3 chr13 28480191 28480491 -73392678 + AluSg SINE Alu 1 299 -11 192 77 0 0 chr13 28480559 28480585 -73392584 + (T)n Simple_repeat Simple_repeat 1 26 0 247 167 106 30 chr13 28481554 28481620 -73391549 - MLT1K LTR MaLR -2 586 516 264 30 0 0 chr13 28481779 28481812 -73391357 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 2007 114 0 0 chr13 28481812 28482092 -73391077 - AluSx SINE Alu -32 280 1 332 316 86 34 chr13 28482484 28482601 -73390568 + L2 LINE L2 3146 3268 -4 1435 144 17 44 chr13 28482976 28483274 -73389895 - AluSx SINE Alu -22 290 1 330 247 34 51 chr13 28483276 28483445 -73389724 - L1MC/D LINE L1 -297 5824 5673 1665 139 0 77 chr13 28483788 28484098 -73389071 + AluSx SINE Alu 6 291 -21 824 161 0 8 chr13 28484103 28484233 -73388936 - FLAM_C SINE Alu 0 133 5 323 264 127 59 chr13 28484362 28484374 -73388795 - HAL1 LINE L1 -1446 1061 1051 1650 145 6 42 chr13 28484374 28484585 -73388584 - AluJo SINE Alu 0 312 114 1742 133 91 0 chr13 28484585 28484871 -73388298 - AluSx SINE Alu 0 312 1 1650 145 6 42 chr13 28484871 28484970 -73388199 - AluJo SINE Alu -198 114 13 323 264 127 59 chr13 28484970 28485264 -73387905 - HAL1 LINE L1 -1456 1051 734 461 356 68 5 chr13 28485500 28485722 -73387447 - MIR SINE MIR -1 261 26 261 139 23 0 chr13 28485725 28485768 -73387401 + FRAM/FAM SINE Alu 26 69 -97 248 114 0 0 chr13 28486359 28486394 -73386775 + U2 snRNA snRNA 1 35 -153 1870 105 0 4 chr13 28486454 28486711 -73386458 + AluSq SINE Alu 1 256 -57 1817 245 92 6 chr13 28486711 28487201 -73385968 + MLT1F LTR MaLR 11 542 0 914 103 0 0 chr13 28487930 28488056 -73385113 - FLAM_C SINE Alu -7 126 1 2536 45 0 3 chr13 28488062 28488374 -73384795 - AluY SINE Alu 0 311 1 713 134 19 70 chr13 28489607 28489764 -73383405 - AluJo SINE Alu -162 150 2 818 127 0 24 chr13 28489772 28489898 -73383271 + AluJo/FLAM SINE Alu 10 132 -180 1950 131 3 7 chr13 28489899 28490033 -73383136 + AluSx SINE Alu 1 134 -178 2264 77 3 13 chr13 28490033 28490346 -73382823 + AluY SINE Alu 1 310 -1 1950 131 3 7 chr13 28490346 28490517 -73382652 + AluSx SINE Alu 134 305 -7 1754 134 31 7 chr13 28490540 28490830 -73382339 - AluSx SINE Alu -15 297 1 1276 268 102 32 chr13 28490830 28491388 -73381781 - L2 LINE L2 -259 3054 2227 1907 211 114 30 chr13 28491449 28491941 -73381228 - MLT1H LTR MaLR -16 533 1 2427 59 3 0 chr13 28491959 28492262 -73380907 - AluY SINE Alu -7 304 1 1526 147 62 38 chr13 28492345 28492637 -73380532 + AluJb SINE Alu 11 309 -3 1634 181 3 3 chr13 28492641 28492944 -73380225 + AluJo SINE Alu 1 303 -9 266 280 38 68 chr13 28493269 28493401 -73379768 - L3b LINE CR1 -164 1419 1292 1917 145 0 3 chr13 28493794 28494091 -73379078 - AluSg SINE Alu -14 296 1 2534 62 0 0 chr13 28494100 28494407 -73378762 - AluY SINE Alu -4 307 1 328 268 106 16 chr13 28494589 28494712 -73378457 - MIR SINE MIR -81 181 48 467 271 88 26 chr13 28494930 28495122 -73378047 + L3 LINE CR1 794 997 -580 2278 69 10 7 chr13 28495136 28495440 -73377729 + AluY SINE Alu 1 305 -6 2074 114 7 0 chr13 28495755 28496052 -73377117 + AluSx SINE Alu 1 299 -13 820 231 0 0 chr13 28496105 28496265 -73376904 + FRAM SINE Alu 6 165 -11 1142 202 62 78 chr13 28496267 28496543 -73376626 + MER39 LTR ERV1 343 613 -94 2104 97 13 0 chr13 28496543 28496841 -73376328 + AluSc SINE Alu 1 302 -7 1142 202 62 78 chr13 28496841 28496935 -73376234 + MER39 LTR ERV1 613 707 0 841 158 0 0 chr13 28497691 28497824 -73375345 - AluJb SINE Alu -179 133 1 734 160 0 83 chr13 28497847 28497991 -73375178 + FLAM_C SINE Alu 6 137 -6 747 217 0 26 chr13 28498736 28498888 -73374281 - FRAM SINE Alu -21 155 8 414 247 65 71 chr13 28499522 28499676 -73373493 + L2 LINE L2 1917 2069 -1245 1233 161 107 29 chr13 28499676 28499956 -73373213 - AluJo SINE Alu -10 302 1 332 145 246 0 chr13 28499959 28500028 -73373141 - FLAM_A SINE Alu -13 120 35 566 234 269 29 chr13 28500180 28500745 -73372424 + L2 LINE L2 2305 3054 -259 653 208 8 0 chr13 28501378 28501503 -73371666 + FLAM_C SINE Alu 1 126 -17 975 181 80 8 chr13 28501802 28502039 -73371130 + AluJo SINE Alu 34 287 -25 311 218 129 10 chr13 28502331 28502432 -73370737 - MER58 DNA MER1_type -2161 259 147 1818 143 11 0 chr13 28503877 28504163 -73369006 - AluSx SINE Alu -23 289 1 973 182 30 2 chr13 28507890 28507952 -73365217 + AluJo SINE Alu 7 66 -246 189 0 0 0 chr13 28507952 28507973 -73365196 + (CA)n Simple_repeat Simple_repeat 2 22 0 973 182 30 2 chr13 28507973 28508146 -73365023 + AluJo SINE Alu 66 297 -15 1051 68 0 0 chr13 28508544 28508677 -73364492 + AluSp SINE Alu 149 281 -32 2108 85 0 7 chr13 28509004 28509286 -73363883 - AluSx SINE Alu -31 281 2 2279 89 0 0 chr13 28509627 28509931 -73363238 + AluSx SINE Alu 1 304 -8 274 179 86 60 chr13 28510001 28510118 -73363051 - MER112 DNA MER1_type -43 217 98 1091 127 0 0 chr13 28510118 28510343 -73362826 - AluSg/x SINE Alu 0 347 123 1876 157 0 0 chr13 28510722 28511022 -73362147 + AluSx SINE Alu 1 300 -12 1982 95 0 0 chr13 28511091 28511353 -73361816 + AluSq SINE Alu 1 262 -51 526 134 24 0 chr13 28511353 28511435 -73361734 + FLAM SINE Alu 45 128 -15 2361 60 0 7 chr13 28511501 28511801 -73361368 + AluY SINE Alu 1 298 -13 449 246 73 92 chr13 28511809 28511895 -73361274 + L2 LINE L2 3015 3101 -212 1648 148 79 0 chr13 28511895 28512173 -73360996 - AluSx SINE Alu -10 302 3 2388 64 0 10 chr13 28512173 28512486 -73360683 - AluY SINE Alu -1 310 1 449 246 73 92 chr13 28512486 28512534 -73360635 + L2 LINE L2 3100 3147 -166 2204 103 10 0 chr13 28512534 28512844 -73360325 - AluSp SINE Alu 0 313 1 449 246 73 92 chr13 28512844 28512967 -73360202 + L2 LINE L2 3147 3269 -44 1895 137 0 40 chr13 28512969 28513291 -73359878 + AluSx SINE Alu 1 309 -3 228 235 0 74 chr13 28513428 28513509 -73359660 + L1ME4a LINE L1 5946 6020 -101 813 147 0 23 chr13 28513753 28513882 -73359287 + FLAM_C SINE Alu 2 127 -16 2100 93 23 3 chr13 28514473 28514775 -73358394 - AluSg SINE Alu -2 308 1 2238 96 3 6 chr13 28514785 28515097 -73358072 - AluY SINE Alu 0 311 1 558 0 0 0 chr13 28515218 28515280 -73357889 + (TTTC)n Simple_repeat Simple_repeat 3 64 0 2377 85 0 0 chr13 28515873 28516178 -73356991 + AluSp SINE Alu 1 305 -8 237 97 0 0 chr13 28516422 28516453 -73356716 + AluSx SINE Alu 1 31 -272 2015 117 0 0 chr13 28516472 28516755 -73356414 + AluSx SINE Alu 21 303 -9 780 171 0 0 chr13 28517044 28517167 -73356002 - FLAM_A SINE Alu -10 123 1 1625 175 0 23 chr13 28517749 28518058 -73355111 - AluJb SINE Alu -8 304 3 233 213 21 0 chr13 28518293 28518340 -73354829 + Charlie1 DNA MER1_type 37 84 -2677 2434 57 0 0 chr13 28518343 28518641 -73354528 - AluY SINE Alu -13 298 1 379 117 0 0 chr13 28518641 28518701 -73354468 - AluSp/q SINE Alu -7 296 237 410 118 15 0 chr13 28518823 28518891 -73354278 - L1PB2 LINE L1 -14 6137 6069 466 181 0 0 chr13 28518891 28518963 -73354206 + MER45 DNA AcHobo 1510 1581 0 795 244 84 65 chr13 28519002 28519342 -73353827 - L2 LINE L2 -761 2553 2204 351 44 0 0 chr13 28519342 28519387 -73353782 + (CA)n Simple_repeat Simple_repeat 2 46 0 795 244 84 65 chr13 28519387 28519415 -73353754 - L2 LINE L2 -1110 2204 2178 240 302 0 0 chr13 28519978 28520031 -73353138 + L2 LINE L2 3261 3313 0 452 297 8 31 chr13 28520191 28520319 -73352850 - L2 LINE L2 -1 3312 3188 403 310 35 9 chr13 28521024 28521137 -73352032 + MIR SINE MIR 31 146 -116 251 174 217 0 chr13 28521839 28521908 -73351261 + MER91B DNA MER1_type 47 130 -60 519 206 0 10 chr13 28521925 28522022 -73351147 + MER91B DNA MER1_type 91 186 -4 229 200 127 0 chr13 28522809 28522864 -73350305 - L2 LINE L2 -74 3198 3137 2226 97 0 0 chr13 28523004 28523302 -73349867 - AluSg1 SINE Alu -11 298 1 28 0 0 0 chr13 28723944 28723972 -73149197 + AT_rich Low_complexity Low_complexity 1 28 0 827 233 6 6 chr13 28724231 28724407 -73148762 - FRAM SINE Alu -1 175 1 214 50 50 0 chr13 28724408 28724448 -73148721 + (TA)n Simple_repeat Simple_repeat 2 43 0 540 308 115 36 chr13 28725083 28725414 -73147755 - L2 LINE L2 -2 3311 2955 27 29 0 0 chr13 28725786 28725820 -73147349 + AT_rich Low_complexity Low_complexity 1 34 0 9360 162 37 15 chr13 28725820 28728797 -73144372 - L1MA3 LINE L1 0 6305 3260 2108 120 3 3 chr13 28728800 28729099 -73144070 - AluSq SINE Alu -8 305 7 9344 119 25 32 chr13 28729101 28730513 -73142656 - L1M1 LINE L1 -3924 3641 2252 1496 209 7 3 chr13 28730513 28730809 -73142360 + AluJb SINE Alu 1 297 -15 9344 119 25 32 chr13 28730809 28731045 -73142124 - L1M1 LINE L1 -5313 2252 2016 680 144 8 76 chr13 28731039 28731171 -73141998 + L1M1 LINE L1 481 603 -6962 * 1868 152 32 7 chr13 28731177 28731487 -73141682 - L1M1 LINE L1 -5551 2014 1697 * 4608 186 11 36 chr13 28731485 28732362 -73140807 - L1M1 LINE L1 -6702 863 9 22 0 0 0 chr13 28732657 28732679 -73140490 + AT_rich Low_complexity Low_complexity 1 22 0 1675 257 32 25 chr13 28732904 28733553 -73139616 - L1MEc LINE L1 -4122 2274 1621 1535 237 24 44 chr13 28733568 28733981 -73139188 + MSTB1 LTR MaLR 1 405 -27 499 273 97 0 chr13 28733982 28734136 -73139033 - FAM SINE Alu -5 170 2 698 85 11 0 chr13 28734156 28734250 -73138919 - AluSq/x SINE Alu -179 133 39 286 27 27 0 chr13 28734251 28734288 -73138881 + MSTB1 LTR MaLR 395 432 0 30 0 0 0 chr13 28734311 28734341 -73138828 + AT_rich Low_complexity Low_complexity 1 30 0 2131 94 16 26 chr13 28734390 28734699 -73138470 - AluY SINE Alu -3 308 3 248 375 27 9 chr13 28734975 28735087 -73138082 - MER81 DNA DNA 0 114 1 2998 282 51 19 chr13 28735089 28736293 -73136876 - L1MEc LINE L1 -5125 1271 30 2185 120 3 0 chr13 28736357 28736656 -73136513 + AluSp SINE Alu 1 300 -13 557 311 128 45 chr13 28737186 28737633 -73135536 + MLT1J LTR MaLR 28 511 0 21 0 0 0 chr13 28739307 28739328 -73133841 + AT_rich Low_complexity Low_complexity 1 21 0 3680 264 75 80 chr13 28739355 28743617 -73129552 + L1MC/D LINE L1 6 4426 -2000 330 141 16 0 chr13 28743617 28743681 -73129488 + L1PA16 LINE L1 6102 6166 0 3680 264 75 80 chr13 28743681 28744804 -73128365 + L1MC/D LINE L1 4426 5553 -873 26 30 0 0 chr13 28745133 28745166 -73128003 + AT_rich Low_complexity Low_complexity 1 33 0 1283 178 119 3 chr13 28745169 28745455 -73127714 + L1MC/D LINE L1 5662 5980 -633 2342 86 0 3 chr13 28745547 28745848 -73127321 - AluSq SINE Alu -13 300 1 268 243 95 74 chr13 28746093 28746241 -73126928 + L2 LINE L2 3159 3309 -4 326 294 129 18 chr13 28746261 28746431 -73126738 - MER5A DNA MER1_type 0 189 1 233 153 0 34 chr13 28746891 28746950 -73126219 + (TTATA)n Simple_repeat Simple_repeat 4 60 0 2072 127 0 0 chr13 28748130 28748429 -73124740 + AluY SINE Alu 1 299 -12 441 169 0 0 chr13 28749639 28749722 -73123447 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 34 78 0 0 chr13 28749967 28750031 -73123138 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 28750120 28750143 -73123026 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 28751761 28751797 -73121372 + AT_rich Low_complexity Low_complexity 1 36 0 1765 205 87 11 chr13 28751857 28752237 -73120932 + L1P3 LINE L1 36 444 -5431 736 168 15 0 chr13 28752258 28752389 -73120780 + L1 LINE L1 4844 4976 -1170 685 242 215 44 chr13 28752591 28752878 -73120291 - L1MEc LINE L1 -2764 3451 3214 2253 88 10 3 chr13 28752878 28753186 -73119983 - AluY SINE Alu -1 310 1 685 242 215 44 chr13 28753186 28753379 -73119790 - L1MEc LINE L1 -3001 3214 3055 2133 99 0 0 chr13 28753379 28753695 -73119474 - AluSg SINE Alu 0 316 1 685 242 215 44 chr13 28753695 28753803 -73119366 - L1MEc LINE L1 -3160 3055 2760 789 232 150 29 chr13 28753915 28754324 -73118845 - L1MEc LINE L1 -3625 2590 2162 1833 108 17 61 chr13 28754324 28754665 -73118504 - AluSx SINE Alu 0 328 1 789 232 150 29 chr13 28754665 28754731 -73118438 - L1MEc LINE L1 -4053 2162 2105 742 240 24 10 chr13 28754750 28754958 -73118211 - L1MD3 LINE L1 -8 7987 7777 466 288 7 7 chr13 28754979 28755118 -73118051 - L1MEc LINE L1 -4580 1816 1678 786 161 88 20 chr13 28755204 28755441 -73117728 + L1MCa LINE L1 2269 2560 -3950 494 303 53 54 chr13 28755617 28756051 -73117118 - L1M2a LINE L1 -5328 883 10 2270 66 0 26 chr13 28757290 28757593 -73115576 + AluY SINE Alu 1 295 -16 1629 137 109 11 chr13 28757647 28757931 -73115238 + AluJb SINE Alu 1 312 0 326 41 0 41 chr13 28757934 28757983 -73115186 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 188 347 116 0 chr13 28758348 28758443 -73114726 + L2 LINE L2 2957 3062 -251 29 47 0 0 chr13 28759539 28759582 -73113587 + AT_rich Low_complexity Low_complexity 1 43 0 291 345 34 47 chr13 28759808 28759956 -73113213 + L2 LINE L2 3122 3267 -5 426 344 31 18 chr13 28760255 28760479 -73112690 - L1M4 LINE L1 -743 5403 5177 748 282 95 12 chr13 28761711 28761952 -73111217 + MIR SINE MIR 2 262 0 2482 63 0 0 chr13 28762263 28762582 -73110587 + L1PA5 LINE L1 5830 6148 -6 27 29 0 0 chr13 28762664 28762698 -73110471 + AT_rich Low_complexity Low_complexity 1 34 0 477 0 0 0 chr13 28762789 28762842 -73110327 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2287 96 0 0 chr13 28762890 28763193 -73109976 + AluSx SINE Alu 1 303 -9 188 132 0 26 chr13 28763206 28763235 -73109934 + (CA)n Simple_repeat Simple_repeat 2 31 -7 1785 146 29 38 chr13 28763235 28763550 -73109619 - AluSx SINE Alu 0 312 1 188 132 0 26 chr13 28763550 28763558 -73109611 + (CA)n Simple_repeat Simple_repeat 31 38 0 252 279 0 0 chr13 28763839 28763900 -73109269 + L2 LINE L2 3241 3301 -12 215 31 31 0 chr13 28764092 28764124 -73109045 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1408 217 3 7 chr13 28764368 28764654 -73108515 + AluJo SINE Alu 4 288 -24 22 0 0 0 chr13 28764655 28764677 -73108492 + AT_rich Low_complexity Low_complexity 1 22 0 227 320 78 23 chr13 28765272 28765400 -73107769 + MIR SINE MIR 19 153 -109 389 244 38 50 chr13 28765409 28765569 -73107600 - MER104 DNA Tc2 -4 176 19 313 209 90 0 chr13 28767248 28767315 -73105854 + LTR33A LTR ERVL 446 518 -5 34 0 0 0 chr13 28767790 28767824 -73105345 + AT_rich Low_complexity Low_complexity 1 34 0 335 253 84 76 chr13 28767846 28768095 -73105074 + L1ME1 LINE L1 3011 3261 -2885 3973 228 46 26 chr13 28768179 28769235 -73103934 - Tigger6a DNA MER2_type 0 1083 6 1814 267 50 35 chr13 28769628 28771084 -73102085 + L1ME1 LINE L1 4608 6116 -50 294 29 0 0 chr13 28771084 28771119 -73102050 + (TA)n Simple_repeat Simple_repeat 1 35 0 520 239 99 0 chr13 28771119 28771164 -73102005 + L1MA10 LINE L1 6292 6331 -3 21 82 0 0 chr13 28771225 28771274 -73101895 + AT_rich Low_complexity Low_complexity 1 49 0 208 333 0 0 chr13 28771568 28771619 -73101550 - L2 LINE L2 -5 3267 3217 964 207 13 30 chr13 28772037 28772274 -73100895 - AluJo SINE Alu -30 282 50 1033 335 75 13 chr13 28774904 28775378 -73097791 - L2 LINE L2 -30 3283 2779 187 345 0 12 chr13 28775862 28775946 -73097223 - L2 LINE L2 -90 3223 3141 25 51 0 0 chr13 28776740 28776779 -73096390 + AT_rich Low_complexity Low_complexity 1 39 0 270 106 0 0 chr13 28777529 28777576 -73095593 + (AATTG)n Simple_repeat Simple_repeat 3 49 0 42 36 0 0 chr13 28777644 28777700 -73095469 + AT_rich Low_complexity Low_complexity 1 56 0 2026 130 10 0 chr13 28778080 28778388 -73094781 - AluSx SINE Alu -1 311 1 183 42 0 0 chr13 28778440 28778464 -73094705 + (TA)n Simple_repeat Simple_repeat 2 25 0 263 59 0 0 chr13 28779169 28779203 -73093966 - HERVL LTR ERVL -5383 271 238 433 373 39 39 chr13 28780326 28780715 -73092454 + L2 LINE L2 2401 2789 -525 25 0 0 0 chr13 28781878 28781903 -73091266 + AT_rich Low_complexity Low_complexity 1 25 0 378 0 0 0 chr13 28782087 28782129 -73091040 + (CA)n Simple_repeat Simple_repeat 2 43 0 596 303 5 21 chr13 28782133 28782321 -73090848 + MIR SINE MIR 30 214 -48 25051 57 12 11 chr13 28782826 28786063 -73087106 - HERV17 LTR ERV1 -5385 3241 1 5687 65 15 36 chr13 28786063 28786860 -73086309 - LTR17 LTR ERV1 0 780 1 698 226 58 13 chr13 28786860 28787050 -73086119 - L1M2 LINE L1 -743 5403 5297 28 86 0 0 chr13 28787424 28787494 -73085675 + AT_rich Low_complexity Low_complexity 1 70 0 306 223 0 106 chr13 28787638 28787732 -73085437 + HAL1b LINE L1 793 876 -472 3196 84 35 0 chr13 28788152 28788582 -73084587 + MLT2A2 LTR ERVL 1 445 -8 2817 168 29 8 chr13 28788841 28789507 -73083662 - L1P5 LINE L1 -379 5775 5100 694 271 83 41 chr13 28789537 28789803 -73083366 + MLT1C LTR MaLR 191 467 0 509 370 74 21 chr13 28789908 28790422 -73082747 + L2 LINE L2 1168 1708 -1606 1827 157 26 3 chr13 28791402 28791746 -73081423 + L1MA5 LINE L1 5949 6300 0 25 90 0 0 chr13 28791801 28791868 -73081301 + AT_rich Low_complexity Low_complexity 1 67 0 24 32 0 0 chr13 28792014 28792045 -73081124 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 28792704 28792727 -73080442 + AT_rich Low_complexity Low_complexity 1 23 0 285 197 8 49 chr13 28792751 28792873 -73080296 + (TAAA)n Simple_repeat Simple_repeat 2 118 0 22 35 0 0 chr13 28792939 28792968 -73080201 + AT_rich Low_complexity Low_complexity 1 29 0 281 235 61 10 chr13 28793182 28793280 -73079889 - LTR16A LTR ERVL -105 345 243 1048 161 0 0 chr13 28793282 28793450 -73079719 - AluSq SINE Alu -10 303 136 494 118 0 0 chr13 28793454 28793530 -73079639 + AluSq/x SINE Alu 39 114 -198 686 215 6 35 chr13 28793718 28793890 -73079279 - MER3 DNA MER1_type -41 168 2 180 328 52 0 chr13 28794004 28794062 -73079107 - L2 LINE L2 -248 3065 3005 262 396 29 0 chr13 28794190 28794329 -73078840 - L2 LINE L2 -441 2873 2731 1767 178 18 12 chr13 28794697 28795029 -73078140 + MLT1B LTR MaLR 57 390 0 28 71 0 0 chr13 28795101 28795157 -73078012 + AT_rich Low_complexity Low_complexity 1 56 0 35 71 0 0 chr13 28795195 28795265 -73077904 + AT_rich Low_complexity Low_complexity 1 70 0 525 154 0 0 chr13 28795671 28795762 -73077407 - L1MA8 LINE L1 -12 6279 6189 2668 7 0 3 chr13 28796762 28797059 -73076110 - AluYa5 SINE Alu -15 296 1 186 206 111 16 chr13 28797391 28797454 -73075715 + MIR SINE MIR 84 152 -110 1130 234 60 18 chr13 28797558 28797840 -73075329 + AluJo SINE Alu 1 294 -8 3054 221 42 11 chr13 28797992 28798104 -73075065 - L1MA9 LINE L1 -38 6274 6167 198 118 0 0 chr13 28798104 28798138 -73075031 + (TG)n Simple_repeat Simple_repeat 1 34 0 3054 221 42 11 chr13 28798138 28798787 -73074382 - L1MA9 LINE L1 -145 6167 5489 5791 60 14 36 chr13 28798787 28799585 -73073584 - LTR17 LTR ERV1 0 780 1 2362 52 14 0 chr13 28799585 28799873 -73073296 - HERV17 LTR ERV1 0 8626 8335 294 51 0 0 chr13 28799863 28799902 -73073267 - HERV17 LTR ERV1 -1078 7548 7510 * 3978 45 4 0 chr13 28799895 28800378 -73072791 - HERV17 LTR ERV1 -2607 6019 5535 548 0 0 0 chr13 28800375 28800436 -73072733 - HERV17 LTR ERV1 -3026 5600 5540 * 6105 38 19 0 chr13 28800421 28801164 -73072005 - HERV17 LTR ERV1 -2926 5700 4944 585 76 0 0 chr13 28802532 28802611 -73070558 + (GAA)n Simple_repeat Simple_repeat 1 79 0 29 60 0 0 chr13 28803343 28803393 -73069776 + AT_rich Low_complexity Low_complexity 1 50 0 24 77 0 0 chr13 28803639 28803691 -73069478 + AT_rich Low_complexity Low_complexity 1 52 0 2071 113 0 27 chr13 28804541 28804842 -73068327 - AluSg SINE Alu -17 293 1 304 240 30 50 chr13 28805188 28805288 -73067881 - MIR SINE MIR -34 228 131 369 238 76 23 chr13 28805725 28805897 -73067272 + MER113 DNA MER1_type? 37 217 -304 514 335 68 49 chr13 28805906 28806359 -73066810 + L1ME LINE L1 147 608 -5597 260 238 24 0 chr13 28806787 28806871 -73066298 + L1ME LINE L1 854 939 -5266 671 309 81 29 chr13 28806923 28807718 -73065451 + L1ME LINE L1 1686 2521 -3875 469 202 20 0 chr13 28808729 28808828 -73064341 - FRAM SINE Alu -15 161 61 2096 116 51 40 chr13 28809048 28809418 -73063751 - THE1C LTR MaLR -1 374 1 346 302 70 80 chr13 28811072 28811446 -73061723 + L2 LINE L2 2158 2527 -787 238 48 95 24 chr13 28811684 28811726 -73061443 - MLT2A2 LTR ERVL 0 453 409 456 104 0 0 chr13 28811726 28811793 -73061376 + (TG)n Simple_repeat Simple_repeat 2 68 0 2160 142 0 0 chr13 28812424 28812727 -73060442 - AluSx SINE Alu -9 303 1 683 221 28 11 chr13 28812772 28812953 -73060216 - L1MA8 LINE L1 -41 6250 6067 186 133 0 0 chr13 28814391 28814421 -73058748 + (T)n Simple_repeat Simple_repeat 1 30 0 2367 78 7 0 chr13 28814441 28814747 -73058422 - AluY SINE Alu -3 308 1 186 43 0 0 chr13 28814765 28814788 -73058381 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 221 327 107 24 chr13 28815248 28815429 -73057740 + MIR3 SINE MIR 35 229 -33 498 130 0 0 chr13 28815831 28815908 -73057261 - L1PA12 LINE L1 -16 6152 6076 187 420 0 0 chr13 28817658 28817739 -73055430 - MIR SINE MIR -78 130 50 318 186 41 21 chr13 28820432 28820529 -73052640 - L1MC4a LINE L1 -546 7262 7164 1055 174 30 25 chr13 28820695 28820896 -73052273 - MER67C LTR ERV1 -307 403 202 * 2085 161 14 6 chr13 28820874 28821235 -73051934 - THE1C LTR MaLR -11 364 1 9218 118 29 67 chr13 28821235 28822878 -73050291 - THE1C-int LTR MaLR 0 1580 1 2396 118 16 11 chr13 28822878 28823251 -73049918 - THE1C LTR MaLR 0 375 1 1779 269 161 37 chr13 28823461 28824605 -73048564 - L1MC4a LINE L1 -729 7079 5794 21 36 0 0 chr13 28824764 28824792 -73048377 + AT_rich Low_complexity Low_complexity 1 28 0 989 154 22 22 chr13 28824830 28825012 -73048157 + MER61A LTR ERV1 162 343 0 204 40 0 0 chr13 28825946 28825971 -73047198 + (CA)n Simple_repeat Simple_repeat 2 26 0 288 154 0 0 chr13 28826007 28826059 -73047110 + (TA)n Simple_repeat Simple_repeat 2 53 0 981 278 126 12 chr13 28826656 28826990 -73046179 - MSTD LTR MaLR 0 396 25 201 39 0 0 chr13 28827002 28827028 -73046141 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 5041 107 7 13 chr13 28827038 28827793 -73045376 - L1PB2 LINE L1 -2 6149 5400 5490 248 98 44 chr13 28827834 28829478 -73043691 - MSTD-int LTR MaLR 0 1735 2 1257 256 54 31 chr13 28829481 28829868 -73043301 - MSTD LTR MaLR 0 396 1 1824 154 0 4 chr13 28830003 28830305 -73042864 + AluSx SINE Alu 20 312 0 429 349 77 10 chr13 28830461 28830656 -73042513 - MIR SINE MIR -24 238 31 5138 61 10 15 chr13 28831544 28832760 -73040409 - L1PA6 LINE L1 -228 5926 4720 258 217 33 0 chr13 28834129 28834189 -73038980 + GA-rich Low_complexity Low_complexity 3 64 0 371 91 0 0 chr13 28834236 28834291 -73038878 + L1MA3 LINE L1 6241 6295 -10 1765 65 5 0 chr13 28834474 28834691 -73038478 + AluY SINE Alu 87 304 -7 387 330 138 21 chr13 28834721 28834909 -73038260 + MIR SINE MIR 52 261 -1 23 33 0 0 chr13 28835201 28835231 -73037938 + AT_rich Low_complexity Low_complexity 1 30 0 303 71 0 0 chr13 28835785 28835827 -73037342 + (CAT)n Simple_repeat Simple_repeat 2 43 0 2212 140 39 3 chr13 28836187 28836572 -73036597 - Tigger3b DNA MER2_type -577 654 256 26 0 0 0 chr13 28837184 28837210 -73035959 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr13 28837660 28837695 -73035474 + AT_rich Low_complexity Low_complexity 1 35 0 456 322 33 41 chr13 28838340 28838585 -73034584 + MIR SINE MIR 19 261 -1 309 245 0 0 chr13 28839541 28839643 -73033526 + CT-rich Low_complexity Low_complexity 3 104 0 351 276 108 63 chr13 28839712 28839898 -73033271 - MLT1L LTR MaLR -31 584 408 1975 134 24 46 chr13 28839898 28840270 -73032899 + THE1B LTR MaLR 1 364 0 351 276 108 63 chr13 28840270 28840457 -73032712 - MLT1L LTR MaLR -207 408 110 970 227 129 98 chr13 28841764 28842244 -73030925 + MLT1D-int LTR MaLR 877 1371 0 1196 269 80 23 chr13 28842244 28842720 -73030449 + MLT1D LTR MaLR 1 503 -2 1067 210 44 0 chr13 28842734 28842939 -73030230 + AluJb SINE Alu 87 300 -12 1252 252 104 68 chr13 28843115 28843973 -73029196 + L1MC/D LINE L1 4264 5152 -994 450 162 0 0 chr13 28843985 28844053 -73029116 + Tigger2 DNA MER2_type 1 68 -2650 * 2182 146 36 36 chr13 28844044 28844490 -73028679 + Tigger2 DNA MER2_type 2273 2718 0 456 213 8 8 chr13 28844490 28844612 -73028557 + L1MC/D LINE L1 5361 5482 -877 333 0 0 0 chr13 28845584 28845621 -73027548 + (TA)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr13 28845857 28845887 -73027282 + AT_rich Low_complexity Low_complexity 1 30 0 333 0 0 0 chr13 28846081 28846118 -73027051 + (TTA)n Simple_repeat Simple_repeat 2 38 0 10167 233 64 32 chr13 28846118 28849482 -73023687 - L1MB1 LINE L1 -11 5981 2725 2819 187 70 36 chr13 28849482 28850241 -73022928 + LTR1 LTR ERV1 1 785 0 1613 119 16 0 chr13 28850241 28850492 -73022677 - AluSx SINE Alu -57 255 1 10167 233 64 32 chr13 28850492 28852532 -73020637 - L1MB1 LINE L1 -3267 2725 716 279 0 0 0 chr13 28852532 28852563 -73020606 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10167 233 64 32 chr13 28852563 28853302 -73019867 - L1MB1 LINE L1 -5276 716 2 1844 130 11 7 chr13 28853875 28854160 -73019009 + AluSx SINE Alu 1 286 -26 2333 90 3 0 chr13 28854202 28854512 -73018657 + AluY SINE Alu 1 311 0 25 51 0 0 chr13 28855218 28855257 -73017912 + AT_rich Low_complexity Low_complexity 1 39 0 2122 138 0 0 chr13 28855739 28856051 -73017118 + AluSx SINE Alu 1 312 0 378 20 41 0 chr13 28856072 28856121 -73017048 - AluY SINE Alu -8 294 244 1391 38 0 0 chr13 28856121 28856279 -73016890 - AluY SINE Alu -144 167 10 34 24 0 0 chr13 28856301 28856342 -73016827 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 28856803 28856828 -73016341 + AT_rich Low_complexity Low_complexity 1 25 0 897 325 49 41 chr13 28856861 28857439 -73015730 - L2 LINE L2 -26 3287 2700 1382 188 17 31 chr13 28857439 28857732 -73015437 + AluJo SINE Alu 1 289 -23 897 325 49 41 chr13 28857732 28857837 -73015332 - L2 LINE L2 -613 2700 2597 523 318 124 22 chr13 28859775 28860090 -73013079 + MLT1J1 LTR MaLR 99 445 -1 23 0 0 0 chr13 28860581 28860604 -73012565 + AT_rich Low_complexity Low_complexity 1 23 0 4073 189 13 8 chr13 28860667 28861500 -73011669 + L1MC1 LINE L1 5491 6327 -6 324 102 0 0 chr13 28861503 28861552 -73011617 + (CA)n Simple_repeat Simple_repeat 2 50 0 1546 274 132 23 chr13 28863014 28863710 -73009459 - L1ME3A LINE L1 -22 6148 5377 9671 197 28 73 chr13 28863730 28865116 -73008053 - LTR48B-int LTR ERV1 -2532 3799 2576 2320 72 3 3 chr13 28865116 28865409 -73007760 - AluSg SINE Alu -17 293 1 9671 197 28 73 chr13 28865409 28866562 -73006607 - LTR48B-int LTR ERV1 -3755 2576 1373 359 153 0 59 chr13 28866646 28866731 -73006438 - LTR48B-int LTR ERV1 -4953 1378 1299 * 2855 169 37 58 chr13 28866730 28867836 -73005333 - LTR48B-int LTR ERV1 -3264 1616 1 1776 231 96 38 chr13 28867839 28868446 -73004723 - LTR48B LTR ERV1 -1 643 2 749 133 215 0 chr13 28868449 28868607 -73004562 - L1MB1 LINE L1 -81 6108 5917 199 356 8 42 chr13 28869300 28869336 -73003833 + MIR SINE MIR 32 68 -140 1867 158 6 3 chr13 28869336 28869647 -73003522 - AluJb SINE Alu 0 312 1 199 356 8 42 chr13 28869647 28869728 -73003441 + MIR SINE MIR 68 145 -63 215 0 0 62 chr13 28869795 28869827 -73003342 + (TTAA)n Simple_repeat Simple_repeat 4 33 0 22 35 0 0 chr13 28869867 28869896 -73003273 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr13 28870143 28870174 -73002995 + AT_rich Low_complexity Low_complexity 1 31 0 504 299 89 41 chr13 28870271 28870562 -73002607 - MLT1I LTR MaLR -42 367 63 193 197 30 0 chr13 28871761 28871827 -73001342 + CT-rich Low_complexity Low_complexity 2 69 0 22 0 0 0 chr13 28871858 28871880 -73001289 + AT_rich Low_complexity Low_complexity 1 22 0 2136 111 7 19 chr13 28874422 28874729 -72998440 - AluSx SINE Alu -9 303 1 37 23 0 0 chr13 28874744 28874788 -72998381 + AT_rich Low_complexity Low_complexity 1 44 0 379 314 76 81 chr13 28875912 28876282 -72996887 + MLT1K LTR MaLR 208 575 -13 499 261 79 30 chr13 28876318 28876647 -72996522 + L1MC4 LINE L1 7695 8039 -3 1095 214 0 0 chr13 28877929 28878130 -72995039 - AluJo SINE Alu -25 287 87 212 218 0 36 chr13 28878217 28878272 -72994897 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 28878499 28878520 -72994649 + AT_rich Low_complexity Low_complexity 1 21 0 1350 226 32 32 chr13 28878741 28879086 -72994083 - MLT1A1 LTR MaLR 0 365 21 1357 186 83 11 chr13 28879089 28879401 -72993768 - MER61B LTR ERV1 0 425 1 290 80 20 0 chr13 28881076 28881126 -72992043 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1846 127 62 4 chr13 28881128 28881403 -72991766 - AluSx SINE Alu -21 291 1 2838 7 0 0 chr13 28882157 28882463 -72990706 + AluYa5 SINE Alu 1 306 -5 21 0 0 0 chr13 28883972 28883993 -72989176 + AT_rich Low_complexity Low_complexity 1 21 0 3207 147 0 0 chr13 28884473 28884970 -72988199 + LOR1a LTR ERV1 1 497 0 249 57 0 0 chr13 28886930 28886965 -72986204 + (TG)n Simple_repeat Simple_repeat 1 35 0 2018 190 67 9 chr13 28887630 28888066 -72985103 + LOR1b LTR ERV1 1 461 0 268 209 38 139 chr13 28888734 28888892 -72984277 - L1ME2 LINE L1 -21 6143 6002 2437 184 31 69 chr13 28888950 28889558 -72983611 + MER34C LTR ERV1 1 585 0 333 193 157 0 chr13 28889560 28889643 -72983526 - L1ME2 LINE L1 -205 5959 5864 2405 175 110 69 chr13 28890141 28890839 -72982330 - LTR8A LTR ERV1 0 727 1 1066 265 69 48 chr13 28890854 28891291 -72981878 + LTR16A1 LTR ERVL 4 449 -8 3172 150 19 15 chr13 28891460 28892048 -72981121 - LTR49 LTR ERV1 -3 592 3 205 281 16 49 chr13 28892064 28892249 -72980920 + T-rich Low_complexity Low_complexity 2 180 0 845 128 0 15 chr13 28892396 28892529 -72980640 + MER41C LTR ERV1 1 131 -423 * 992 180 95 5 chr13 28892520 28892731 -72980438 + LTR1B LTR ERV1 597 826 0 1432 242 81 5 chr13 28892968 28893332 -72979837 + MLT2B1 LTR ERVL 1 397 -67 1009 148 25 6 chr13 28893382 28893544 -72979625 - LTR29 LTR ERV1 -3 619 455 1918 191 5 23 chr13 28893547 28893934 -72979235 - MER67D LTR ERV1 -123 391 12 366 283 9 35 chr13 28894223 28894336 -72978833 - MIR3 SINE MIR -39 169 60 4639 139 60 36 chr13 28894921 28895803 -72977366 + MER4D LTR ERV1 1 903 0 2232 124 14 30 chr13 28895850 28896220 -72976949 - THE1B LTR MaLR 0 364 1 11586 100 2 1 chr13 28896220 28897797 -72975372 - THE1B-int LTR MaLR 0 1580 1 2129 136 8 37 chr13 28897797 28898172 -72974997 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr13 28898226 28898254 -72974915 + AT_rich Low_complexity Low_complexity 1 28 0 215 206 0 44 chr13 28898846 28898914 -72974255 + (TATG)n Simple_repeat Simple_repeat 2 66 0 1304 133 10 0 chr13 28899142 28899345 -72973824 - MER54B LTR ERVL -1 792 588 826 224 12 0 chr13 28899337 28899502 -72973667 - MER54B LTR ERVL -515 278 112 * 1333 217 93 3 chr13 28899502 28899901 -72973268 + MER66A LTR ERV1 1 478 0 714 179 9 0 chr13 28899901 28900013 -72973156 - MER54B LTR ERVL -678 115 3 2364 94 0 0 chr13 28900193 28900490 -72972679 - AluY SINE Alu -14 297 1 28 79 0 0 chr13 28900725 28900788 -72972381 + AT_rich Low_complexity Low_complexity 1 63 0 21 71 0 0 chr13 28901068 28901110 -72972059 + AT_rich Low_complexity Low_complexity 1 42 0 7879 112 4 4 chr13 28901118 28902290 -72970879 + L1P LINE L1 1726 2897 -3249 21 0 0 0 chr13 28902457 28902478 -72970691 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 28902525 28902589 -72970580 + AT_rich Low_complexity Low_complexity 1 64 0 68 42 0 0 chr13 28902676 28902772 -72970397 + AT_rich Low_complexity Low_complexity 1 96 0 1572 223 54 82 chr13 28903328 28904306 -72968863 - L1MD2 LINE L1 -13 6346 5245 4814 100 43 35 chr13 28904306 28905079 -72968090 - LTR19C LTR ERV1 0 779 1 1572 223 54 82 chr13 28905079 28905653 -72967516 - L1MD2 LINE L1 -1114 5245 4657 21 36 0 0 chr13 28906179 28906207 -72966962 + AT_rich Low_complexity Low_complexity 1 28 0 1298 192 80 17 chr13 28906496 28906783 -72966386 - AluJb SINE Alu -7 305 1 2122 125 0 7 chr13 28906871 28907168 -72966001 + AluSg SINE Alu 1 295 -15 1101 200 4 0 chr13 28907190 28907420 -72965749 + L1 LINE L1 4507 4737 -1409 3194 151 27 7 chr13 28907565 28908121 -72965048 + Tigger3(Golem) DNA MER2_type 2463 3029 0 222 372 41 8 chr13 28908506 28908627 -72964542 - L2 LINE L2 -547 2767 2643 2217 117 0 7 chr13 28908655 28908963 -72964206 + AluSq SINE Alu 1 306 -7 717 187 80 0 chr13 28908986 28909136 -72964033 + pTR5 LTR ERV1 1415 1576 -862 1380 76 0 0 chr13 28909137 28909322 -72963847 + HERVFH21 LTR ERV1 2107 2291 -4238 * 7650 209 80 79 chr13 28909319 28909766 -72963403 + HERVFH21 LTR ERV1 3074 3519 -3010 4931 101 8 10 chr13 28909766 28910489 -72962680 + LTR30 LTR ERV1 1 722 0 7650 209 80 79 chr13 28910489 28912822 -72960347 + HERVFH21 LTR ERV1 3519 5860 -669 6190 78 17 4 chr13 28912822 28913637 -72959532 - LTR12 LTR ERV1 0 826 1 7650 209 80 79 chr13 28913637 28914308 -72958861 + HERVFH21 LTR ERV1 5860 6529 0 2075 126 102 42 chr13 28914310 28914714 -72958455 + LTR21A LTR ERV1 62 489 -16 3561 203 79 29 chr13 28914785 28915593 -72957576 + MER21B LTR ERV1 1 849 -14 186 346 73 29 chr13 28915695 28915831 -72957338 + L2 LINE L2 2439 2580 -734 342 200 7 44 chr13 28916076 28916189 -72956980 - L1MC4 LINE L1 -1339 6983 1996 301 333 0 0 chr13 28916170 28916260 -72956909 - L1MC4 LINE L1 -1339 6703 6614 * 358 282 29 109 chr13 28916447 28916621 -72956548 - MLT1J LTR MaLR -259 252 93 344 294 27 14 chr13 28917379 28917525 -72955644 + LTR68 LTR ERV1 3 150 -590 419 255 68 52 chr13 28917554 28917746 -72955423 + LTR68 LTR ERV1 237 431 -309 3171 157 26 0 chr13 28918047 28918587 -72954582 - MER41C LTR ERV1 0 554 1 2007 127 0 36 chr13 28918882 28919189 -72953980 - AluSq SINE Alu -17 296 1 375 302 202 26 chr13 28919383 28919734 -72953435 - MLT1J LTR MaLR -1 510 98 1922 100 89 4 chr13 28920034 28920303 -72952866 - AluSx SINE Alu -20 292 1 1090 304 137 24 chr13 28920336 28921013 -72952156 - L2 LINE L2 -1056 2258 1505 1281 237 25 80 chr13 28921085 28921524 -72951645 - MLT1C LTR MaLR 0 467 53 2089 130 3 3 chr13 28922339 28922640 -72950529 + AluSg SINE Alu 1 301 -9 2179 211 73 6 chr13 28925427 28925976 -72947193 - L1MB7 LINE L1 -10 6174 5589 858 276 52 41 chr13 28926023 28926080 -72947089 - MER74B LTR ERVL -74 548 493 2036 128 174 8 chr13 28926080 28926447 -72946722 - MSTA LTR MaLR 0 428 1 858 276 52 41 chr13 28926447 28926751 -72946418 - MER74B LTR ERVL -129 493 183 4148 165 18 11 chr13 28926766 28927843 -72945326 + L1MA4 LINE L1 4895 5980 -320 1269 147 135 36 chr13 28928057 28928309 -72944860 + AluJo SINE Alu 6 282 -30 25 51 0 0 chr13 28928309 28928348 -72944821 + AT_rich Low_complexity Low_complexity 1 39 0 477 280 18 0 chr13 28928439 28928607 -72944562 + L1ME1 LINE L1 4936 5106 -1040 249 247 94 0 chr13 28928734 28928819 -72944350 + L1ME1 LINE L1 5328 5420 -750 21 0 0 0 chr13 28928829 28928850 -72944319 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 28929525 28929560 -72943609 + AT_rich Low_complexity Low_complexity 1 35 0 320 273 37 64 chr13 28929566 28929753 -72943416 + L1ME LINE L1 663 844 -5226 2478 55 0 26 chr13 28929874 28930184 -72942985 + AluY SINE Alu 1 302 -9 772 317 57 21 chr13 28930274 28930801 -72942368 - L1ME3A LINE L1 -227 5943 5398 23 33 0 0 chr13 28930952 28930982 -72942187 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 28931268 28931289 -72941880 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 28931634 28931660 -72941509 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 28931919 28931954 -72941215 + AT_rich Low_complexity Low_complexity 1 35 0 385 282 78 33 chr13 28932306 28932551 -72940618 + L1ME1 LINE L1 5457 5712 -409 1064 227 92 22 chr13 28932678 28933035 -72940134 + L1ME1 LINE L1 5779 6160 -6 16337 85 1 7 chr13 28934104 28936398 -72936771 - L1P LINE L1 -1412 4734 2456 1560 136 105 14 chr13 28936398 28936692 -72936477 + MER9 LTR ERVK 191 511 0 4362 106 10 32 chr13 28936692 28937369 -72935800 + HERVK9 LTR ERVK 1 662 -5254 8721 78 0 0 chr13 28937369 28938495 -72934674 + HERVK9 LTR ERVK 1625 2750 -3166 5431 163 21 5 chr13 28938509 28939446 -72933723 - L1P LINE L1 -5184 962 11 951 155 0 58 chr13 28939455 28939662 -72933507 + L1MA4A LINE L1 6104 6298 -5 11121 224 22 27 chr13 28939987 28942107 -72931062 - L1P4 LINE L1 -730 6139 4009 213 39 0 0 chr13 28942107 28942133 -72931036 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1990 157 0 0 chr13 28942137 28942424 -72930745 - AluSx SINE Alu -25 287 1 11121 224 22 27 chr13 28942424 28942715 -72930454 - L1P4 LINE L1 -2863 4006 3715 1689 212 0 0 chr13 28942715 28943017 -72930152 - AluJb SINE Alu -10 302 1 11121 224 22 27 chr13 28943017 28943879 -72929290 - L1P4 LINE L1 -3154 3715 2879 9588 194 11 18 chr13 28943883 28945603 -72927566 - L1P4 LINE L1 -5127 1722 16 186 43 0 0 chr13 28945610 28945633 -72927536 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3208 244 43 21 chr13 28945634 28946080 -72927089 - L1MEc LINE L1 -1377 5267 4833 1250 242 35 0 chr13 28946080 28946365 -72926804 - AluJo SINE Alu -15 297 3 3208 244 43 21 chr13 28946365 28947113 -72926056 - L1MEc LINE L1 -1811 4833 4046 276 89 44 0 chr13 28947128 28947173 -72925996 + AluJ/FLAM SINE Alu 12 58 -244 2234 96 3 0 chr13 28947274 28947556 -72925613 + AluSq SINE Alu 12 294 -19 3217 267 39 46 chr13 28947556 28948049 -72925120 - L1MEc LINE L1 -2589 4055 3560 1747 180 0 26 chr13 28948049 28948354 -72924815 - AluSx SINE Alu -13 299 3 3217 267 39 46 chr13 28948354 28949102 -72924067 - L1MEc LINE L1 -3084 3560 2808 2026 128 17 0 chr13 28949102 28949392 -72923777 - AluSx SINE Alu -17 295 1 3217 267 39 46 chr13 28949392 28949827 -72923342 - L1MEc LINE L1 -3836 2808 2442 1536 206 11 7 chr13 28949827 28950138 -72923031 - AluJo SINE Alu 0 312 1 3217 267 39 46 chr13 28950138 28950528 -72922641 - L1MEc LINE L1 -4202 2442 2051 2679 246 50 64 chr13 28950530 28950782 -72922387 - L1MEc LINE L1 -5471 1071 817 2310 75 0 3 chr13 28950782 28951074 -72922095 + AluY SINE Alu 1 291 -20 2679 246 50 64 chr13 28951074 28951612 -72921557 - L1MEc LINE L1 -5725 817 297 2403 45 3 0 chr13 28951612 28951898 -72921271 - AluY SINE Alu -24 287 1 2679 246 50 64 chr13 28951898 28952177 -72920992 - L1MEc LINE L1 -6245 297 16 30 27 0 0 chr13 28952271 28952308 -72920861 + AT_rich Low_complexity Low_complexity 1 37 0 33 43 0 0 chr13 28952695 28952742 -72920427 + AT_rich Low_complexity Low_complexity 1 47 0 626 283 7 0 chr13 28953531 28953676 -72919493 - LTR33 LTR ERVL -340 181 36 775 315 24 20 chr13 28954019 28954311 -72918858 - MLT2E LTR ERVL -15 613 321 353 333 96 6 chr13 28954310 28954485 -72918684 - MLT2E LTR ERVL -414 214 24 1464 194 70 32 chr13 28954485 28954762 -72918407 - MLT1A1 LTR MaLR 0 365 71 455 99 70 0 chr13 28954762 28954833 -72918336 - MADE1 DNA Mariner 0 80 5 1464 194 70 32 chr13 28954833 28954896 -72918273 - MLT1A1 LTR MaLR -294 71 12 248 327 9 62 chr13 28954999 28955112 -72918057 + L2 LINE L2 3207 3313 0 23 33 0 0 chr13 28955973 28956003 -72917166 + AT_rich Low_complexity Low_complexity 1 30 0 1136 287 142 124 chr13 28957381 28958715 -72914454 - L2 LINE L2 -1 3312 2004 777 256 20 20 chr13 28958715 28958918 -72914251 - MER63A DNA MER1_type -7 203 1 1136 287 142 124 chr13 28958918 28960072 -72913097 - L2 LINE L2 -1309 2004 566 1863 262 37 10 chr13 28960072 28960771 -72912398 + L1MB7 LINE L1 5421 6162 -4 182 260 27 55 chr13 28960791 28960864 -72912305 - L2 LINE L2 -2726 588 518 180 167 0 0 chr13 28960864 28960912 -72912257 + T-rich Low_complexity Low_complexity 1 48 0 1136 303 77 44 chr13 28960913 28961304 -72911865 - L2 LINE L2 -2784 530 119 1539 254 109 8 chr13 28961304 28961772 -72911397 - LTR40a LTR ERVL -2 517 3 1136 303 77 44 chr13 28961772 28961858 -72911311 - L2 LINE L2 -3195 119 37 277 237 64 133 chr13 28962264 28962437 -72910732 + MLT1H LTR MaLR 389 549 0 302 143 0 0 chr13 28962484 28962533 -72910636 - U5 snRNA snRNA -67 49 1 29 70 0 0 chr13 28962777 28962834 -72910335 + AT_rich Low_complexity Low_complexity 1 57 0 2035 160 0 0 chr13 28963263 28963569 -72909600 - AluJb SINE Alu -2 310 5 31 36 0 18 chr13 28964051 28964070 -72909099 + AT_rich Low_complexity Low_complexity 1 19 -36 1627 188 25 7 chr13 28964070 28964347 -72908822 + AluJo SINE Alu 1 282 -30 31 36 0 18 chr13 28964347 28964383 -72908786 + AT_rich Low_complexity Low_complexity 19 55 0 23 92 0 0 chr13 28964450 28964515 -72908654 + AT_rich Low_complexity Low_complexity 1 65 0 279 133 0 0 chr13 28964645 28964690 -72908479 + (TG)n Simple_repeat Simple_repeat 2 46 0 1162 111 5 26 chr13 28965475 28965664 -72907505 - MER30B DNA MER1_type 0 190 6 1005 192 72 110 chr13 28968608 28969028 -72904141 - MER66A LTR ERV1 -52 426 97 603 189 41 16 chr13 28969219 28969341 -72903828 + AluJb SINE Alu 9 133 -179 306 295 97 19 chr13 28970289 28970547 -72902622 - L1ME LINE L1 -361 5760 5483 603 189 41 16 chr13 28972039 28972161 -72901008 + AluJb SINE Alu 9 133 -179 197 376 127 29 chr13 28972509 28972714 -72900455 - L2 LINE L2 -357 2957 2733 377 300 98 40 chr13 28973109 28973501 -72899668 - L1ME LINE L1 -361 5760 5348 1689 107 8 173 chr13 28973921 28974446 -72898723 - LTR21B LTR ERV1 0 438 1 1098 79 0 7 chr13 28974929 28975068 -72898101 - AluSq/x SINE Alu -175 138 1 23 0 0 0 chr13 28975687 28975710 -72897459 + AT_rich Low_complexity Low_complexity 1 23 0 2112 136 0 0 chr13 28975919 28976213 -72896956 + AluSx SINE Alu 3 296 -16 700 236 40 40 chr13 28976265 28976424 -72896745 - LTR16B LTR ERVL -6 458 297 2335 59 10 0 chr13 28976424 28976712 -72896457 + AluY SINE Alu 1 291 -20 700 236 40 40 chr13 28976712 28976777 -72896392 - LTR16B LTR ERVL -166 298 234 1061 211 90 34 chr13 28977020 28977399 -72895770 - Charlie1 DNA MER1_type -17 2744 2345 1278 195 118 39 chr13 28978163 28978552 -72894617 - Charlie5 DNA MER1_type 0 2619 2200 289 206 226 10 chr13 28978530 28978632 -72894537 - Charlie5 DNA MER1_type -2488 124 1 * 672 186 0 0 chr13 28979123 28979252 -72893917 + FLAM_A SINE Alu 5 133 0 1256 181 44 38 chr13 28979474 28979527 -72893642 + MER33 DNA MER1_type 8 59 -2526 2837 75 26 61 chr13 28979527 28979568 -72893601 - MLT2A1 LTR ERVL 0 444 403 524 61 0 37 chr13 28979568 28979650 -72893519 + (TA)n Simple_repeat Simple_repeat 1 79 0 2837 75 26 61 chr13 28979650 28980064 -72893105 - MLT2A1 LTR ERVL -41 403 5 1256 181 44 38 chr13 28980064 28980325 -72892844 + MER33 DNA MER1_type 59 324 0 298 316 110 0 chr13 28981746 28981882 -72891287 - MIR SINE MIR -56 206 56 21 0 0 0 chr13 28981884 28981905 -72891264 + AT_rich Low_complexity Low_complexity 1 21 0 220 196 0 36 chr13 28982266 28982322 -72890847 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 236 318 0 34 chr13 28983326 28983414 -72889755 - MIR3 SINE MIR -34 174 90 1679 175 7 13 chr13 28984245 28984548 -72888621 - AluJo SINE Alu -10 302 2 287 336 95 28 chr13 28984627 28984838 -72888331 - MLT1J LTR MaLR -24 487 263 22 0 0 0 chr13 28985865 28985887 -72887282 + AT_rich Low_complexity Low_complexity 1 22 0 190 319 14 42 chr13 28986514 28986586 -72886583 - L2 LINE L2 -12 3260 3191 1955 110 3 53 chr13 28986759 28987078 -72886091 + AluY SINE Alu 1 303 -8 1915 265 31 77 chr13 28987243 28988232 -72884937 + L1MEc LINE L1 43 986 -5410 1108 240 0 0 chr13 28988236 28988444 -72884725 - Tigger5 DNA MER2_type -2114 209 2 1387 214 0 31 chr13 28988539 28988833 -72884336 - AluJo SINE Alu -27 285 1 21 0 0 0 chr13 28989487 28989508 -72883661 + AT_rich Low_complexity Low_complexity 1 21 0 298 297 55 28 chr13 28989697 28989842 -72883327 - MIR SINE MIR -40 222 74 345 240 0 20 chr13 28990007 28990107 -72883062 - MER103 DNA DNA -65 101 4 22 0 0 0 chr13 28990240 28990262 -72882907 + AT_rich Low_complexity Low_complexity 1 22 0 334 138 86 5 chr13 28990426 28990507 -72882662 - MSTD LTR MaLR -327 69 1 21 0 0 0 chr13 28991181 28991202 -72881967 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 28992042 28992077 -72881092 + AT_rich Low_complexity Low_complexity 1 35 0 510 314 54 27 chr13 28992238 28992461 -72880708 - MIR SINE MIR -8 254 26 194 157 0 20 chr13 28992580 28992631 -72880538 + (TA)n Simple_repeat Simple_repeat 1 50 0 326 275 22 51 chr13 28992912 28993050 -72880119 + L3 LINE CR1 671 804 -773 2172 131 0 6 chr13 28993213 28993525 -72879644 + AluSg SINE Alu 1 310 0 463 322 110 9 chr13 28993818 28994045 -72879124 - MIR SINE MIR 0 262 13 223 279 198 0 chr13 28994682 28994768 -72878401 - L2 LINE L2 -20 3293 3191 204 286 57 0 chr13 28994932 28995002 -72878167 + L2 LINE L2 685 758 -2556 319 344 52 68 chr13 28995258 28995545 -72877624 + L2 LINE L2 2148 2438 -834 647 231 0 0 chr13 28995545 28995675 -72877494 - FLAM_A SINE Alu -3 130 1 319 344 52 68 chr13 28995675 28996226 -72876943 + L2 LINE L2 2438 3048 -224 240 119 119 0 chr13 28997081 28997140 -72876029 - L1ME4a LINE L1 -1 6120 6055 1977 138 34 42 chr13 28997951 28998329 -72874840 - THE1C LTR MaLR 0 375 1 17746 30 8 0 chr13 28998388 29000556 -72872613 - L1P LINE L1 -1560 4586 2401 308 293 67 83 chr13 29001609 29001862 -72871307 - L1M4 LINE L1 -5545 1310 1061 1979 130 81 26 chr13 29001862 29002207 -72870962 - THE1B LTR MaLR 0 364 1 308 293 67 83 chr13 29002207 29002253 -72870916 - L1M4 LINE L1 -5794 1061 1016 189 74 0 0 chr13 29002585 29002612 -72870557 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 287 254 55 41 chr13 29002669 29002828 -72870341 - L1M4 LINE L1 -6383 472 2 2056 112 0 0 chr13 29002842 29003142 -72870027 + AluSx SINE Alu 10 309 0 1353 227 153 5 chr13 29003498 29003930 -72869239 - LTR54B LTR ERV1 -2 496 1 207 0 0 0 chr13 29004822 29004845 -72868324 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr13 29005616 29005639 -72867530 + (T)n Simple_repeat Simple_repeat 1 23 0 213 39 0 0 chr13 29006111 29006137 -72867032 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 486 282 27 16 chr13 29006961 29007126 -72866043 + MLT1J LTR MaLR 109 287 -163 32 26 0 0 chr13 29009069 29009108 -72864061 + AT_rich Low_complexity Low_complexity 1 39 0 293 82 20 0 chr13 29009286 29009335 -72863834 + (TA)n Simple_repeat Simple_repeat 1 50 0 581 301 152 41 chr13 29009349 29009791 -72863378 - L2 LINE L2 -533 2781 2291 1222 200 126 15 chr13 29010208 29010478 -72862691 - AluJb SINE Alu -2 300 1 24 67 0 0 chr13 29010813 29010858 -72862311 + AT_rich Low_complexity Low_complexity 1 45 0 234 0 0 0 chr13 29012540 29012566 -72860603 + (TG)n Simple_repeat Simple_repeat 2 27 0 2364 47 3 7 chr13 29013214 29013514 -72859655 + AluY SINE Alu 1 299 -12 1576 171 19 4 chr13 29063543 29064225 -72808944 - L1 LINE L1 -3483 4082 3347 18319 107 5 1 chr13 29064239 29067759 -72805410 - L1PA7 LINE L1 -6 6463 2934 5687 115 173 4 chr13 29067759 29068868 -72804301 - L1PA7 LINE L1 -4784 1677 1 2940 104 16 16 chr13 29068869 29069359 -72803810 - L1 LINE L1 -4206 3359 2870 744 135 0 68 chr13 29069362 29069495 -72803674 - THE1B LTR MaLR 0 364 241 13367 171 22 9 chr13 29069500 29071756 -72801413 - L1 LINE L1 -5264 2301 17 2439 98 0 0 chr13 29071995 29072302 -72800867 + AluSx SINE Alu 1 307 -5 301 58 39 0 chr13 29072783 29072835 -72800334 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 201 346 118 28 chr13 29074420 29074674 -72798495 - L2 LINE L2 -32 3281 3005 232 297 0 0 chr13 29074956 29075020 -72798149 + (CTA)n Simple_repeat Simple_repeat 1 64 0 511 341 39 5 chr13 29075135 29075343 -72797826 + L2 LINE L2 2676 2890 -424 229 302 142 35 chr13 29075406 29075575 -72797594 + L2 LINE L2 3103 3289 -24 293 349 39 23 chr13 29075746 29075875 -72797294 + MIR SINE MIR 20 150 -58 779 143 119 0 chr13 29077989 29078115 -72795054 - L1P3 LINE L1 -6120 341 201 7037 55 11 1 chr13 29078115 29079503 -72793666 + L1PA8 LINE L1 4768 6165 -7 2847 7 0 0 chr13 29080462 29080769 -72792400 - AluYa5 SINE Alu -4 307 1 532 366 91 40 chr13 29081864 29082866 -72790303 + L2 LINE L2 1098 2234 -1080 432 287 124 13 chr13 29083191 29083495 -72789674 + L1ME3A LINE L1 5188 5518 -646 334 313 46 0 chr13 29083514 29083735 -72789434 + L1ME3A LINE L1 5627 5817 -304 1907 220 43 31 chr13 29084127 29084614 -72788555 + MLT1D LTR MaLR 6 498 -7 237 360 25 25 chr13 29084744 29084810 -72788359 - MIR SINE MIR -8 254 189 558 88 0 0 chr13 29084810 29084890 -72788279 + MADE1 DNA Mariner 1 80 0 237 360 25 25 chr13 29084890 29084984 -72788185 - MIR SINE MIR -72 190 94 24 32 0 0 chr13 29085039 29085070 -72788099 + AT_rich Low_complexity Low_complexity 1 31 0 351 78 0 0 chr13 29085582 29085633 -72787536 + (GA)n Simple_repeat Simple_repeat 2 52 0 470 280 53 34 chr13 29087143 29087350 -72785819 - LTR33 LTR ERVL 0 521 311 192 77 0 0 chr13 29087720 29087746 -72785423 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 825 305 24 4 chr13 29087761 29088007 -72785162 - ERVL LTR ERVL -2319 3445 3195 26 30 0 0 chr13 29088791 29088824 -72784345 + AT_rich Low_complexity Low_complexity 1 33 0 243 269 0 0 chr13 29089077 29089144 -72784025 + (TA)n Simple_repeat Simple_repeat 2 68 0 382 205 0 26 chr13 29089915 29089993 -72783176 - MLT1D LTR MaLR -429 76 1 3148 143 103 48 chr13 29090134 29091227 -72781942 + pTR5 LTR ERV1 6 558 -156 493 310 75 5 chr13 29093721 29093934 -72779235 + MIR SINE MIR 27 254 -8 268 192 48 106 chr13 29095071 29095175 -72777994 - MIR SINE MIR -68 194 97 1198 230 129 59 chr13 29095321 29095777 -72777392 - MLT1D LTR MaLR 0 505 18 29 47 0 0 chr13 29095953 29095996 -72777173 + AT_rich Low_complexity Low_complexity 1 43 0 189 171 0 0 chr13 29096214 29096249 -72776920 + (TA)n Simple_repeat Simple_repeat 1 35 0 675 237 193 55 chr13 29096814 29097249 -72775920 + MLT1D LTR MaLR 3 497 -8 330 288 108 7 chr13 29097258 29097397 -72775772 + HERVL LTR ERVL 2 154 -5500 349 198 18 0 chr13 29097455 29097566 -72775603 + (TA)n Simple_repeat Simple_repeat 2 114 0 1191 258 95 14 chr13 29097613 29098388 -72774781 + HERVL LTR ERVL 294 1164 -4490 3829 185 56 17 chr13 29098389 29099135 -72774034 + MSTB1-int LTR MaLR 877 1651 0 2340 163 34 2 chr13 29099135 29099553 -72773616 + MSTB1 LTR MaLR 1 431 -1 1142 207 38 54 chr13 29099560 29099821 -72773348 + HERVL LTR ERVL 2003 2259 -3505 27 29 0 0 chr13 29099877 29099911 -72773258 + AT_rich Low_complexity Low_complexity 1 34 0 1697 141 27 11 chr13 29100336 29100691 -72772478 + LOR1b-int LTR ERV1 5369 6064 -1086 540 165 0 0 chr13 29100690 29100781 -72772388 + LOR1b-int LTR ERV1 8030 8120 0 * 1974 167 115 14 chr13 29100781 29101200 -72771969 + LOR1b LTR ERV1 1 461 0 23 68 0 0 chr13 29101982 29102026 -72771143 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 29102283 29102304 -72770865 + AT_rich Low_complexity Low_complexity 1 21 0 395 234 15 75 chr13 29102556 29102757 -72770412 + pTR5 LTR ERV1 840 1028 -1410 4402 95 33 158 chr13 29102837 29103780 -72769389 + LTR12 LTR ERV1 2 826 0 783 71 106 0 chr13 29103780 29103893 -72769276 + LTR12 LTR ERV1 590 714 0 21 0 0 0 chr13 29103915 29103936 -72769233 + AT_rich Low_complexity Low_complexity 1 21 0 1616 172 7 21 chr13 29105427 29105712 -72767457 + AluJb SINE Alu 1 281 -31 277 306 53 52 chr13 29106488 29106640 -72766529 + MIR SINE MIR 11 166 -42 565 205 116 0 chr13 29107037 29107149 -72766020 - FLAM_C SINE Alu -18 125 1 241 317 154 82 chr13 29108021 29108437 -72764732 + L2 LINE L2 2826 3271 -1 1017 252 114 32 chr13 29108552 29109038 -72764131 + LTR28 LTR ERV1 1 1232 -137 35 41 0 0 chr13 29109849 29109898 -72763271 + AT_rich Low_complexity Low_complexity 1 49 0 9794 195 37 13 chr13 29109899 29112905 -72760264 - L1PA14 LINE L1 -4 6157 3091 248 278 68 26 chr13 29113050 29113241 -72759928 + HAL1 LINE L1 980 1178 -1329 327 302 74 45 chr13 29113278 29113480 -72759689 + HAL1 LINE L1 1274 1481 -1026 1073 215 90 98 chr13 29113879 29114443 -72758726 + MLT1E1 LTR MaLR 1 585 -8 270 0 0 0 chr13 29114806 29114836 -72758333 + (CA)n Simple_repeat Simple_repeat 1 30 0 389 300 31 38 chr13 29114836 29114996 -72758173 - MIR SINE MIR -74 188 30 1818 165 23 3 chr13 29115901 29116262 -72756907 + MER7A DNA MER2_type 1 346 0 2265 105 0 13 chr13 29116579 29116911 -72756258 + AluSx SINE Alu 1 312 0 1031 193 124 69 chr13 29117571 29117949 -72755220 - MER57A LTR ERV1 -2 401 3 30 100 0 0 chr13 29117988 29118088 -72755081 + AT_rich Low_complexity Low_complexity 1 100 0 7283 163 14 9 chr13 29118101 29120539 -72752630 - L1MA3 LINE L1 0 6305 3856 5914 161 71 42 chr13 29120539 29121825 -72751344 + pTR5 LTR ERV1 743 2065 -373 32 57 0 0 chr13 29122220 29122273 -72750896 + AT_rich Low_complexity Low_complexity 1 53 0 708 218 0 8 chr13 29122409 29122542 -72750627 + FLAM_C SINE Alu 2 133 0 7121 169 146 41 chr13 29122841 29124429 -72748740 + MER52A LTR ERV1 1 1755 0 296 148 16 0 chr13 29124502 29124563 -72748606 + (TA)n Simple_repeat Simple_repeat 1 62 0 478 325 47 71 chr13 29125495 29125962 -72747207 + MLT1J LTR MaLR 15 470 -41 2070 65 0 0 chr13 29126245 29126614 -72746555 - L1PA8 LINE L1 -605 5526 5158 4983 59 3 0 chr13 29126614 29127234 -72745935 + L1PA8 LINE L1 5526 6153 -19 316 337 48 27 chr13 29128399 29128586 -72744583 + MLT1J LTR MaLR 85 275 -236 232 283 0 0 chr13 29129138 29129191 -72743978 + (TG)n Simple_repeat Simple_repeat 2 54 0 216 242 81 16 chr13 29129904 29129966 -72743203 - MIR SINE MIR -13 249 184 243 214 10 20 chr13 29129985 29130083 -72743086 + GA-rich Low_complexity Low_complexity 1 97 0 1892 138 67 14 chr13 29131085 29131441 -72741728 - THE1C LTR MaLR 0 375 1 1994 77 70 14 chr13 29131619 29131906 -72741263 + AluY SINE Alu 1 303 -8 205 171 0 0 chr13 29131910 29131951 -72741218 + (CAAA)n Simple_repeat Simple_repeat 3 43 0 213 196 0 0 chr13 29132767 29132823 -72740346 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1087 214 74 19 chr13 29132865 29133136 -72740033 - AluJo SINE Alu -2 310 25 321 258 40 24 chr13 29133143 29133267 -72739902 + MLT1J LTR MaLR 51 176 -335 2655 242 83 26 chr13 29133505 29134141 -72739028 - L1ME1 LINE L1 -5 6161 5562 450 0 0 0 chr13 29134141 29134191 -72738978 + (TG)n Simple_repeat Simple_repeat 1 50 0 2655 242 83 26 chr13 29134191 29134304 -72738865 - L1ME1 LINE L1 -604 5562 5457 518 244 0 22 chr13 29134304 29134439 -72738730 + FLAM_C SINE Alu 2 133 0 2655 242 83 26 chr13 29134439 29134489 -72738680 - L1ME1 LINE L1 -709 5457 5411 2306 79 0 13 chr13 29134489 29134792 -72738377 - AluY SINE Alu -12 299 1 2655 242 83 26 chr13 29134792 29134837 -72738332 - L1ME1 LINE L1 -755 5411 5267 203 270 11 11 chr13 29134853 29134942 -72738227 + (TA)n Simple_repeat Simple_repeat 1 89 0 281 280 43 0 chr13 29134960 29135053 -72738116 - L1ME1 LINE L1 -916 5230 5134 538 355 93 49 chr13 29135639 29136397 -72736772 + L2 LINE L2 1947 2880 -433 2128 126 0 0 chr13 29136397 29136698 -72736471 - AluY SINE Alu -10 301 1 538 355 93 49 chr13 29136698 29137153 -72736016 + L2 LINE L2 2880 3313 0 1196 195 103 29 chr13 29137286 29137558 -72735611 - AluJo SINE Alu -9 293 2 195 69 0 0 chr13 29138032 29138061 -72735108 + (TA)n Simple_repeat Simple_repeat 2 30 0 192 269 173 19 chr13 29140248 29140352 -72732817 + MIR SINE MIR 124 243 -19 3396 195 27 1 chr13 29140832 29141541 -72731628 + L1MC1 LINE L1 5607 6333 0 447 328 28 17 chr13 29141552 29141729 -72731440 - LTR33 LTR ERVL -339 182 4 26 0 0 0 chr13 29143698 29143724 -72729445 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr13 29146100 29146134 -72727035 + AT_rich Low_complexity Low_complexity 1 34 0 1064 207 11 19 chr13 29147614 29147880 -72725289 - L1MD3 LINE L1 -1 7994 7731 24 53 0 0 chr13 29147962 29148000 -72725169 + AT_rich Low_complexity Low_complexity 1 38 0 997 251 80 23 chr13 29148333 29148771 -72724398 + LTR37B LTR ERV1 4 466 -2 278 333 44 8 chr13 29149367 29149619 -72723550 - L1ME1 LINE L1 -1487 4659 4399 21 0 0 0 chr13 29150409 29150430 -72722739 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 29150851 29150872 -72722297 + AT_rich Low_complexity Low_complexity 1 21 0 225 322 0 0 chr13 29150918 29150977 -72722192 + L2 LINE L2 3248 3306 -7 488 307 73 28 chr13 29152371 29152806 -72720363 + L1MC/D LINE L1 5366 5820 -722 21 71 0 0 chr13 29153745 29153787 -72719382 + AT_rich Low_complexity Low_complexity 1 42 0 2615 192 26 26 chr13 29154243 29154847 -72718322 - L1MA10 LINE L1 0 6334 5731 26 0 0 0 chr13 29156043 29156069 -72717100 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr13 29156842 29156872 -72716297 + AT_rich Low_complexity Low_complexity 1 30 0 335 303 0 0 chr13 29156992 29157081 -72716088 - L1MC4 LINE L1 -1339 6703 6615 2042 121 26 71 chr13 29157104 29157152 -72716017 - L1PA15 LINE L1 -21 6144 6095 7731 16 2 0 chr13 29157152 29158442 -72714727 + L1PA3 LINE L1 4860 6151 -4 2042 121 26 71 chr13 29158442 29158460 -72714709 - L1PA15 LINE L1 -70 6095 6078 279 0 0 0 chr13 29158460 29158491 -72714678 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2042 121 26 71 chr13 29158491 29158803 -72714366 - L1PA15 LINE L1 -87 6078 5782 1497 189 14 0 chr13 29158812 29159109 -72714060 + L1P LINE L1 3479 3779 -2367 2144 168 6 11 chr13 29159261 29159625 -72713544 - THE1C LTR MaLR 0 375 14 231 356 127 13 chr13 29159886 29160122 -72713047 - L2 LINE L2 -609 2705 2443 23 33 0 0 chr13 29160474 29160504 -72712665 + AT_rich Low_complexity Low_complexity 1 30 0 315 364 12 19 chr13 29160888 29161050 -72712119 + LTR33 LTR ERVL 52 212 -309 3547 145 133 8 chr13 29161124 29162480 -72710689 + pTR5 LTR ERV1 742 2606 0 605 197 8 41 chr13 29162689 29162811 -72710358 + FLAM_C SINE Alu 1 118 -25 189 171 0 0 chr13 29162813 29162848 -72710321 + GA-rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 29163029 29163050 -72710119 + AT_rich Low_complexity Low_complexity 1 21 0 627 286 66 33 chr13 29163106 29163347 -72709822 - MIR SINE MIR -9 253 5 410 318 84 28 chr13 29163382 29163775 -72709394 + L1M4 LINE L1 4349 4763 -1383 36 77 0 0 chr13 29164682 29164760 -72708409 + AT_rich Low_complexity Low_complexity 1 78 0 381 358 147 29 chr13 29165729 29166565 -72706604 + L2 LINE L2 1724 2658 -656 25 0 0 0 chr13 29166881 29166906 -72706263 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 29166914 29166935 -72706234 + AT_rich Low_complexity Low_complexity 1 21 0 359 322 23 35 chr13 29167918 29168092 -72705077 - L2 LINE L2 -5 3308 3137 807 243 36 8 chr13 29168095 29168456 -72704713 + MLT2B1 LTR ERVL 2 460 -60 183 229 0 0 chr13 29168698 29168759 -72704410 + A-rich Low_complexity Low_complexity 1 61 0 1206 317 127 27 chr13 29168791 29168846 -72704323 - L2 LINE L2 -1281 2033 1985 2004 173 16 19 chr13 29168846 29169222 -72703947 - THE1C LTR MaLR 0 375 1 1206 317 127 27 chr13 29169222 29169838 -72703331 - L2 LINE L2 -1329 1985 1295 298 277 0 0 chr13 29169842 29169925 -72703244 + (TA)n Simple_repeat Simple_repeat 1 83 0 180 176 0 0 chr13 29169957 29169991 -72703178 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 2184 156 6 8 chr13 29170027 29170392 -72702777 - THE1B LTR MaLR 0 364 1 8144 118 175 0 chr13 29170393 29171737 -72701432 - THE1B-int LTR MaLR -1 1579 1 2160 164 6 3 chr13 29171739 29172099 -72701070 - THE1B LTR MaLR -2 362 2 1627 251 59 60 chr13 29172149 29173129 -72700040 - L1MA4A LINE L1 -3318 3064 2091 8626 228 51 32 chr13 29173129 29176067 -72697102 + L1MA4A LINE L1 3035 6037 -502 1907 62 62 0 chr13 29176067 29176324 -72696845 + AluY SINE Alu 39 311 0 8626 228 51 32 chr13 29176324 29176829 -72696340 + L1MA4A LINE L1 6037 6531 -8 2228 113 7 0 chr13 29177726 29178036 -72695133 + AluSx SINE Alu 1 312 0 576 165 0 0 chr13 29178218 29178303 -72694866 + FLAM SINE Alu 38 122 -21 5827 206 19 26 chr13 29178320 29178751 -72694418 + L1MA5A LINE L1 2920 3353 -2793 2142 97 7 13 chr13 29178751 29179051 -72694118 + AluY SINE Alu 1 298 -13 5827 206 19 26 chr13 29179051 29180088 -72693081 + L1MA5A LINE L1 3353 4377 -1769 1954 138 0 21 chr13 29180098 29180423 -72692746 + L1PA7 LINE L1 8 325 -6136 * 4395 98 8 5 chr13 29180406 29181048 -72692121 + L1PA7 LINE L1 1006 1649 -4812 20356 105 9 0 chr13 29181031 29184895 -72688274 + L1PA7 LINE L1 2569 6469 0 5217 160 31 44 chr13 29184897 29186805 -72686364 + L1MA5A LINE L1 4368 6280 -17 1521 159 85 15 chr13 29187712 29187983 -72685186 - AluJb SINE Alu -22 290 1 1663 153 42 88 chr13 29188381 29188734 -72684435 + MER1B DNA MER1_type 1 337 0 249 133 142 17 chr13 29189451 29189571 -72683598 + (TTTAA)n Simple_repeat Simple_repeat 2 136 0 3429 117 42 17 chr13 29189915 29190554 -72682615 - HERV17 LTR ERV1 -2686 5434 4780 1296 199 13 63 chr13 29190554 29191005 -72682164 + MER52A LTR ERV1 663 1232 -523 762 163 23 0 chr13 29191341 29191470 -72681699 - LTR12 LTR ERV1 -234 480 349 301 169 28 28 chr13 29191470 29191541 -72681628 - LTR30 LTR ERV1 -108 614 544 1387 132 108 4 chr13 29191541 29191792 -72681377 - LTR12 LTR ERV1 -437 277 1 4839 129 4 8 chr13 29191792 29192569 -72680600 - HERV9 LTR ERV1 0 8399 7626 1695 161 71 63 chr13 29192567 29193332 -72679837 - HERV17 LTR ERV1 -5156 1740 840 * 23432 99 5 4 chr13 29193325 29196710 -72676459 - HERV17 LTR ERV1 -3445 4954 1568 8094 134 4 26 chr13 29196707 29198085 -72675084 - HERV17 LTR ERV1 -6998 1401 55 * 754 143 45 60 chr13 29198069 29198236 -72674933 - LTR12 LTR ERV1 -231 483 299 * 252 243 14 0 chr13 29198236 29198306 -72674863 - LTR30 LTR ERV1 -108 614 544 1310 157 31 66 chr13 29198306 29198593 -72674576 - LTR12 LTR ERV1 -437 277 1 1807 226 27 57 chr13 29198597 29199146 -72674023 + MER52A LTR ERV1 641 1755 0 18335 131 19 20 chr13 29199146 29199885 -72673284 + MER52A-int LTR ERV1 1 739 -6352 2138 114 0 43 chr13 29199885 29200210 -72672959 - AluY SINE Alu 0 311 1 18335 131 19 20 chr13 29200210 29203686 -72669483 + MER52A-int LTR ERV1 739 4342 -2749 1690 118 11 78 chr13 29203687 29204057 -72669112 - MER4A LTR ERV1 0 664 261 557 102 20 20 chr13 29204057 29204155 -72669014 - MER4A LTR ERV1 -566 98 1 18432 109 10 8 chr13 29204155 29206903 -72666266 + MER52A-int LTR ERV1 4340 7091 0 1357 208 45 45 chr13 29206908 29207460 -72665709 + MER52A LTR ERV1 663 1359 -396 731 245 25 0 chr13 29207444 29207607 -72665562 + MER52A LTR ERV1 1587 1753 -2 * 16682 136 39 32 chr13 29207613 29210941 -72662228 - LOR1b-int LTR ERV1 -3331 4789 1439 6039 127 48 23 chr13 29210979 29212103 -72661066 - LOR1b-int LTR ERV1 -6766 1354 203 1781 174 57 0 chr13 29212113 29212464 -72660705 - LOR1b-int LTR ERV1 -7749 371 1 2137 148 117 14 chr13 29212464 29212882 -72660287 - LOR1b LTR ERV1 0 461 1 1473 128 35 0 chr13 29213375 29213602 -72659567 - LTR12 LTR ERV1 0 714 480 275 253 11 0 chr13 29213602 29213693 -72659476 - LTR30 LTR ERV1 -79 643 552 1399 64 223 0 chr13 29213693 29213926 -72659243 - LTR12 LTR ERV1 -429 285 1 2114 130 0 0 chr13 29214759 29215051 -72658118 - AluSx SINE Alu -15 297 6 439 354 42 0 chr13 29215069 29215281 -72657888 - MIR SINE MIR -32 230 10 216 67 0 0 chr13 29216186 29216216 -72656953 + (CA)n Simple_repeat Simple_repeat 1 30 0 1208 274 103 8 chr13 29218152 29218638 -72654531 - MLT1E LTR MaLR 0 593 62 4295 138 40 58 chr13 29218646 29219487 -72653682 - LTR1B LTR ERV1 0 826 1 2815 171 48 46 chr13 29219487 29220178 -72652991 - LTR8A LTR ERV1 -2 725 34 1441 163 100 62 chr13 29220205 29220823 -72652346 - LTR48 LTR ERV1 -4 783 18 3861 121 114 138 chr13 29221008 29222542 -72650627 - pTR5 LTR ERV1 0 2438 743 257 346 92 0 chr13 29222555 29222685 -72650484 + MIR SINE MIR 49 190 -72 22 35 0 0 chr13 29223140 29223169 -72650000 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 29224444 29224469 -72648700 + AT_rich Low_complexity Low_complexity 1 25 0 36 40 0 0 chr13 29225698 29225748 -72647421 + AT_rich Low_complexity Low_complexity 1 50 0 2560 52 0 10 chr13 29225979 29226288 -72646881 + AluY SINE Alu 1 306 -5 248 406 47 8 chr13 29227001 29227129 -72646040 + L2 LINE L2 3117 3249 -23 316 219 0 109 chr13 29227190 29227318 -72645851 + L1MC4 LINE L1 6590 6703 -1339 2048 152 3 0 chr13 29227374 29227684 -72645485 + AluSq SINE Alu 3 313 0 242 303 47 43 chr13 29227867 29228144 -72645025 - L1ME LINE L1 -540 5630 5353 1886 126 3 120 chr13 29229289 29229671 -72643498 - MER1B DNA MER1_type 0 337 1 223 371 21 0 chr13 29229863 29229960 -72643209 + L2 LINE L2 3138 3236 -36 6730 150 23 31 chr13 29230100 29230565 -72642604 + Tigger1 DNA MER2_type 1 469 -1949 760 201 11 26 chr13 29230565 29230754 -72642415 - MER30B DNA MER1_type -4 186 1 6730 150 23 31 chr13 29230754 29231697 -72641472 + Tigger1 DNA MER2_type 469 1419 -999 1117 110 0 13 chr13 29231697 29232016 -72641153 + AluSx SINE Alu 1 317 0 6730 150 23 31 chr13 29232016 29232110 -72641059 + Tigger1 DNA MER2_type 1419 1512 -906 2293 172 39 0 chr13 29232110 29232522 -72640647 + MSTA LTR MaLR 1 428 0 6730 150 23 31 chr13 29232522 29233362 -72639807 + Tigger1 DNA MER2_type 1512 2418 0 575 62 12 0 chr13 29233465 29233545 -72639624 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 237 342 53 9 chr13 29233648 29233762 -72639407 + MIR SINE MIR 123 241 -21 22 43 0 21 chr13 29233940 29233968 -72639201 + AT_rich Low_complexity Low_complexity 1 29 -17 701 191 0 0 chr13 29233968 29234083 -72639086 - FLAM_A SINE Alu -18 115 1 22 43 0 21 chr13 29234083 29234101 -72639068 + AT_rich Low_complexity Low_complexity 29 46 0 2124 161 8 25 chr13 29234176 29234574 -72638595 + L1PA16 LINE L1 5767 6157 -9 26 30 0 0 chr13 29234841 29234874 -72638295 + AT_rich Low_complexity Low_complexity 1 33 0 233 313 113 33 chr13 29234952 29235102 -72638067 + L2 LINE L2 1751 1912 -1402 4032 99 2 0 chr13 29235384 29235937 -72637232 + MER41A LTR ERV1 1 554 0 21 36 0 0 chr13 29236622 29236650 -72636519 + AT_rich Low_complexity Low_complexity 1 28 0 369 341 35 58 chr13 29237724 29237950 -72635219 - MIR SINE MIR -22 240 20 6895 186 146 22 chr13 29238359 29239130 -72634039 + MER52A LTR ERV1 1 675 -1080 2685 76 24 0 chr13 29239130 29239499 -72633670 + L1PA8 LINE L1 5792 6169 -3 6895 186 146 22 chr13 29239499 29240288 -72632881 + MER52A LTR ERV1 675 1755 0 565 283 61 19 chr13 29241277 29241489 -72631680 + MIR SINE MIR 24 244 -18 1821 171 0 3 chr13 29241583 29241887 -72631282 + AluJb SINE Alu 1 303 -9 421 338 46 28 chr13 29241955 29242171 -72630998 + L2 LINE L2 1452 1671 -1643 1584 239 23 87 chr13 29242237 29242414 -72630755 + MER97b DNA MER1_type? 3 190 -863 297 0 0 0 chr13 29242414 29242447 -72630722 + (CAA)n Simple_repeat Simple_repeat 1 33 0 1584 239 23 87 chr13 29242447 29242877 -72630292 + MER97b DNA MER1_type? 190 571 -482 337 241 18 27 chr13 29243080 29243192 -72629977 + MER97c DNA MER1_type? 980 1090 0 618 242 27 22 chr13 29243263 29243486 -72629683 - L1M4 LINE L1 -3104 3042 2819 399 135 24 143 chr13 29243494 29243620 -72629549 - L1MB7 LINE L1 -8 6176 6066 330 307 73 0 chr13 29243622 29243814 -72629355 - L1M4 LINE L1 -3338 2808 2603 6081 205 16 6 chr13 29243842 29245111 -72628058 - L1P LINE L1 -1082 5064 3784 1922 157 135 6 chr13 29245121 29245477 -72627692 - MSTA LTR MaLR -24 404 3 268 309 81 0 chr13 29245581 29245704 -72627465 - L2 LINE L2 -1281 2033 1901 25 51 0 0 chr13 29245872 29245911 -72627258 + AT_rich Low_complexity Low_complexity 1 39 0 604 285 103 61 chr13 29246128 29246553 -72626616 + LTR16B LTR ERVL 3 445 -19 2241 105 0 13 chr13 29246763 29247078 -72626091 + AluSx SINE Alu 1 311 -1 1972 204 50 9 chr13 29247470 29247907 -72625262 + MLT1C LTR MaLR 1 455 -12 1457 354 33 3 chr13 29248024 29248687 -72624482 + HERV16 LTR ERVL 731 1413 -3583 1593 302 47 37 chr13 29248771 29249311 -72623858 + HERV16 LTR ERVL 1597 2199 -2925 1484 220 36 12 chr13 29249311 29249647 -72623522 + MER2 DNA MER2_type 1 344 0 1593 302 47 37 chr13 29249647 29249867 -72623302 + HERV16 LTR ERVL 2199 2415 -2709 1409 186 30 4 chr13 29249876 29250140 -72623029 - AluJb SINE Alu -21 291 21 303 235 15 0 chr13 29250558 29250626 -72622543 + LTR16B LTR ERVL 396 464 0 372 290 35 28 chr13 29252899 29253044 -72620125 - MIR SINE MIR -74 188 43 24 91 0 0 chr13 29253918 29253984 -72619185 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr13 29254088 29254113 -72619056 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr13 29254250 29254284 -72618885 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr13 29254509 29254534 -72618635 + AT_rich Low_complexity Low_complexity 1 25 0 225 139 0 0 chr13 29254627 29254670 -72618499 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 331 269 38 106 chr13 29254687 29254847 -72618322 + LTR33A LTR ERVL 4 152 -371 670 93 0 0 chr13 29255161 29255258 -72617911 - L1PA3 LINE L1 -213 5942 5846 925 36 0 0 chr13 29255258 29255364 -72617805 + L1PA3 LINE L1 6045 6155 0 21 0 0 0 chr13 29255364 29255385 -72617784 + AT_rich Low_complexity Low_complexity 1 21 0 805 140 28 9 chr13 29255514 29255729 -72617440 + GA-rich Low_complexity Low_complexity 1 218 0 188 65 0 32 chr13 29255730 29255761 -72617408 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 1877 125 32 42 chr13 29255819 29256132 -72617037 - AluSx SINE Alu -2 310 1 2211 107 0 0 chr13 29256473 29256773 -72616396 - AluSx SINE Alu -12 300 1 2095 99 3 0 chr13 29257190 29257515 -72615654 - AluSx SINE Alu 0 326 1 25 31 0 0 chr13 29257640 29257672 -72615497 + AT_rich Low_complexity Low_complexity 1 32 0 360 317 42 0 chr13 29257780 29257900 -72615269 - L1MEc LINE L1 -4502 1894 1770 186 71 0 0 chr13 29258578 29258606 -72614563 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 589 254 73 11 chr13 29258630 29258807 -72614362 + MER5A DNA MER1_type 2 189 0 22 56 0 0 chr13 29259262 29259298 -72613871 + AT_rich Low_complexity Low_complexity 1 36 0 646 107 12 0 chr13 29259842 29259942 -72613227 - MSTA LTR MaLR 0 428 268 186 296 0 0 chr13 29259942 29259986 -72613183 - L2 LINE L2 -695 2619 2576 1364 140 133 8 chr13 29259986 29260250 -72612919 + MSTA LTR MaLR 1 297 -131 796 307 57 62 chr13 29260308 29260796 -72612373 + L2 LINE L2 2828 3313 0 24 32 0 0 chr13 29260900 29260931 -72612238 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr13 29261721 29261758 -72611411 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 29262097 29262118 -72611051 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 29263394 29263423 -72609746 + AT_rich Low_complexity Low_complexity 1 29 0 2189 190 29 94 chr13 29263800 29264480 -72608689 - MER92B LTR ERV1 0 636 1 186 306 121 16 chr13 29265514 29265638 -72607531 + MIR SINE MIR 16 152 -56 183 217 12 24 chr13 29266444 29266527 -72606642 + CT-rich Low_complexity Low_complexity 3 84 0 1608 215 36 15 chr13 29267964 29268355 -72604814 + MER63B DNA MER1_type 2 400 -36 21 36 0 0 chr13 29268546 29268574 -72604595 + AT_rich Low_complexity Low_complexity 1 28 0 275 206 75 28 chr13 29268575 29268682 -72604487 - L1MA8 LINE L1 -5 6286 6175 363 230 161 0 chr13 29269344 29269431 -72603738 + MER5A DNA MER1_type 4 104 -85 324 247 108 0 chr13 29269497 29269590 -72603579 + L2 LINE L2 3196 3298 -15 23 78 0 0 chr13 29269766 29269817 -72603352 + AT_rich Low_complexity Low_complexity 1 51 0 222 323 16 0 chr13 29269880 29269942 -72603227 - MER5A DNA MER1_type -13 176 114 213 375 42 0 chr13 29269897 29269969 -72603200 + MER5A DNA MER1_type 43 117 -72 * 1594 167 46 101 chr13 29270009 29270535 -72602634 - LTR54B LTR ERV1 -1 497 1 2251 222 26 21 chr13 29270805 29271274 -72601895 + MLT2B3 LTR ERVL 84 554 0 1672 25 5 0 chr13 29272016 29272216 -72600953 - L1PA5 LINE L1 -8 6146 5946 218 341 70 47 chr13 29272384 29272568 -72600601 + MIR3 SINE MIR 4 192 -43 180 274 321 0 chr13 29272645 29272729 -72600440 + L2 LINE L2 2129 2239 -1075 874 284 124 34 chr13 29272775 29273212 -72599957 + L2 LINE L2 2833 3308 -5 363 293 67 13 chr13 29273536 29273705 -72599464 - MIR SINE MIR -62 146 4 237 368 60 26 chr13 29273866 29273983 -72599186 - MIR3 SINE MIR -7 201 81 23 33 0 0 chr13 29275737 29275767 -72597402 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 29275944 29275973 -72597196 + AT_rich Low_complexity Low_complexity 1 29 0 223 344 99 32 chr13 29276182 29276403 -72596766 - L2 LINE L2 -838 2476 2241 203 355 110 82 chr13 29276763 29277081 -72596088 + L2 LINE L2 2933 3259 -13 1777 262 45 107 chr13 29277454 29278639 -72594530 + L1M4 LINE L1 5 1143 -5503 495 80 13 13 chr13 29278639 29278714 -72594455 + MADE1 DNA Mariner 1 75 -5 1777 262 45 107 chr13 29278714 29278980 -72594189 + L1M4 LINE L1 1143 1424 -5222 * 7030 257 50 13 chr13 29278958 29281413 -72591756 + L1M4 LINE L1 3307 5851 -793 747 156 0 8 chr13 29281423 29281545 -72591624 + L1M4 LINE L1 6026 6146 -526 25 51 0 0 chr13 29281756 29281795 -72591374 + AT_rich Low_complexity Low_complexity 1 39 0 250 208 19 0 chr13 29281994 29282047 -72591122 + L2 LINE L2 3255 3308 -5 339 331 56 94 chr13 29282269 29282749 -72590420 - L2 LINE L2 -2 3270 2809 298 275 148 7 chr13 29282938 29283087 -72590082 - L2 LINE L2 -957 2357 2188 197 241 101 0 chr13 29283178 29283257 -72589912 + L3b LINE CR1 1293 1379 -204 2089 122 0 0 chr13 29285759 29286053 -72587116 + AluSq SINE Alu 1 294 -19 23 0 0 0 chr13 29286100 29286123 -72587046 + AT_rich Low_complexity Low_complexity 1 23 0 1413 152 0 0 chr13 29286389 29286593 -72586576 + AluSx SINE Alu 1 204 -108 238 152 61 0 chr13 29286594 29286696 -72586473 + (TTTA)n Simple_repeat Simple_repeat 1 108 0 841 261 73 67 chr13 29287068 29287425 -72585744 - LTR16A1 LTR ERVL -18 439 81 2538 167 71 24 chr13 29287544 29288077 -72585092 - L1MC1 LINE L1 0 6333 5776 24 0 0 0 chr13 29288413 29288437 -72584732 + AT_rich Low_complexity Low_complexity 1 24 0 325 273 61 59 chr13 29289040 29289485 -72583684 + L1MEd LINE L1 925 1464 -1026 24 0 0 0 chr13 29290019 29290043 -72583126 + AT_rich Low_complexity Low_complexity 1 24 0 225 298 7 33 chr13 29290086 29290237 -72582932 + A-rich Low_complexity Low_complexity 4 150 0 22 0 0 0 chr13 29290793 29290815 -72582354 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr13 29292870 29292904 -72580265 + (CA)n Simple_repeat Simple_repeat 1 34 0 1742 186 3 3 chr13 29293064 29293371 -72579798 - AluSx SINE Alu -5 307 1 662 181 0 192 chr13 29293839 29294110 -72579059 - MER20 DNA MER1_type 0 219 1 365 223 46 61 chr13 29294604 29294653 -72578516 - MSTB LTR MaLR -175 251 203 1780 172 7 0 chr13 29294653 29294943 -72578226 + AluSx SINE Alu 1 292 -20 365 223 46 61 chr13 29294943 29295082 -72578087 - MSTB LTR MaLR -223 203 1 10298 75 5 37 chr13 29295400 29297766 -72575403 - L1PA7 LINE L1 0 6154 3872 356 167 30 0 chr13 29298194 29298260 -72574909 + MIR SINE MIR 82 149 -113 2021 121 3 0 chr13 29298705 29298995 -72574174 + AluSp SINE Alu 1 291 -22 1521 198 116 56 chr13 29299175 29299660 -72573509 + MER67D LTR ERV1 1 514 0 24 32 0 0 chr13 29300513 29300544 -72572625 + AT_rich Low_complexity Low_complexity 1 31 0 5505 133 7 8 chr13 29300570 29302335 -72570834 - L1PA15 LINE L1 -4 6812 5053 7478 248 74 29 chr13 29302353 29304151 -72569018 - L1PA15 LINE L1 -2805 3992 2276 2059 57 7 18 chr13 29304151 29304432 -72568737 - L1PA8 LINE L1 0 6172 5895 7478 248 74 29 chr13 29304432 29306421 -72566748 - L1PA15 LINE L1 -4521 2276 2 22 0 0 0 chr13 29306808 29306830 -72566339 + AT_rich Low_complexity Low_complexity 1 22 0 292 300 83 105 chr13 29307406 29307457 -72565712 + L3 LINE CR1 1209 1260 -317 608 213 5 56 chr13 29307457 29307654 -72565515 - MER53 DNA DNA -2 187 1 292 300 83 105 chr13 29307654 29307975 -72565194 + L3 LINE CR1 1260 1573 -4 43 20 0 0 chr13 29308416 29308466 -72564703 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr13 29308623 29308648 -72564521 + AT_rich Low_complexity Low_complexity 1 25 0 1670 177 10 3 chr13 29308659 29308958 -72564211 + AluJo SINE Alu 11 311 -1 279 236 0 28 chr13 29310990 29311062 -72562107 + GA-rich Low_complexity Low_complexity 4 73 0 229 255 0 0 chr13 29311317 29311368 -72561801 + (TG)n Simple_repeat Simple_repeat 2 52 0 258 333 27 34 chr13 29311369 29311516 -72561653 + L2 LINE L2 1717 1862 -1452 280 265 15 0 chr13 29312010 29312078 -72561091 + L2 LINE L2 3237 3305 -8 252 0 0 0 chr13 29312277 29312305 -72560864 + (CA)n Simple_repeat Simple_repeat 1 28 0 281 366 32 0 chr13 29313390 29313483 -72559686 + MIR3 SINE MIR 87 182 -26 413 308 0 8 chr13 29313540 29313660 -72559509 - L2 LINE L2 -3 3310 3192 1924 133 68 11 chr13 29313779 29314132 -72559037 - THE1C LTR MaLR 0 375 3 30 27 0 0 chr13 29314286 29314323 -72558846 + AT_rich Low_complexity Low_complexity 1 37 0 193 189 0 0 chr13 29314370 29314407 -72558762 - MIR SINE MIR 0 262 226 818 267 84 15 chr13 29314411 29314936 -72558233 - MLT1G3 LTR MaLR 0 595 1 2258 172 52 0 chr13 29315169 29315576 -72557593 - MSTA LTR MaLR 0 428 1 26 0 0 0 chr13 29315827 29315853 -72557316 + AT_rich Low_complexity Low_complexity 1 26 0 343 361 22 11 chr13 29315853 29316033 -72557136 - MLT1-int LTR MaLR -498 873 692 393 268 47 37 chr13 29316307 29316497 -72556672 - MLT1-int LTR MaLR -830 541 350 313 47 0 23 chr13 29316512 29316555 -72556614 - U2 snRNA snRNA -146 42 1 1495 213 17 7 chr13 29316799 29317100 -72556069 + AluJb SINE Alu 1 304 -8 972 328 78 15 chr13 29317223 29317620 -72555549 - MLT1G1 LTR MaLR -173 422 1 546 262 85 0 chr13 29317643 29317807 -72555362 - MIR SINE MIR -73 189 12 275 319 0 11 chr13 29317819 29317910 -72555259 + MIR SINE MIR 65 154 -108 24 32 0 0 chr13 29318057 29318088 -72555081 + AT_rich Low_complexity Low_complexity 1 31 0 2093 125 0 7 chr13 29318281 29318578 -72554591 - AluSg SINE Alu -15 295 1 1590 168 47 50 chr13 29318676 29319016 -72554153 + MER44D DNA MER2_type 1 609 0 239 0 32 0 chr13 29319207 29319238 -72553931 + (TA)n Simple_repeat Simple_repeat 2 33 0 324 70 0 0 chr13 29319239 29319282 -72553887 + (TG)n Simple_repeat Simple_repeat 2 44 0 407 305 75 32 chr13 29319290 29319477 -72553692 + LTR33 LTR ERVL 17 211 -310 397 232 12 0 chr13 29319653 29319735 -72553434 + MER8 DNA MER2_type 7 89 -150 241 250 0 0 chr13 29319775 29319819 -72553350 + MER2 DNA MER2_type 302 345 0 319 287 50 99 chr13 29320282 29320585 -72552584 + L2 LINE L2 3026 3313 0 508 324 85 52 chr13 29321307 29321545 -72551624 - L1MEd LINE L1 -893 1597 1368 2077 114 4 0 chr13 29321545 29321869 -72551300 - AluSp SINE Alu 0 328 4 508 324 85 52 chr13 29321869 29322213 -72550956 - L1MEd LINE L1 -1122 1368 915 2158 119 0 0 chr13 29322693 29322988 -72550181 + AluSc SINE Alu 1 295 -14 21 57 0 0 chr13 29323528 29323563 -72549606 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 29324493 29324517 -72548652 + AT_rich Low_complexity Low_complexity 1 24 0 1938 141 0 0 chr13 29325518 29325808 -72547361 - AluSx SINE Alu -21 291 2 6178 43 145 14 chr13 29325840 29326727 -72546442 - L1P LINE L1 -5141 1005 2 597 342 163 52 chr13 29326813 29327606 -72545563 + L2 LINE L2 79 959 -2355 970 294 96 21 chr13 29327606 29327990 -72545179 + L2 LINE L2 2104 2516 -798 1550 203 4 14 chr13 29328008 29328289 -72544880 + MER1B DNA MER1_type 1 278 -61 354 367 19 13 chr13 29329072 29329230 -72543939 + L2 LINE L2 2895 3053 -260 606 292 40 26 chr13 29331740 29331966 -72541203 - MLT1J LTR MaLR -46 465 237 27 73 0 0 chr13 29332899 29332954 -72540215 + AT_rich Low_complexity Low_complexity 1 55 0 233 333 13 0 chr13 29335532 29335607 -72537562 + C-rich Low_complexity Low_complexity 6 81 0 281 111 0 0 chr13 29336093 29336138 -72537031 + L1MA2 LINE L1 6260 6304 0 2074 124 3 0 chr13 29336679 29336977 -72536192 + AluSx SINE Alu 2 300 -12 2010 107 34 0 chr13 29337007 29337298 -72535871 + AluY SINE Alu 1 301 -10 2473 49 0 7 chr13 29337399 29337705 -72535464 + AluY SINE Alu 1 304 -7 318 282 47 0 chr13 29337707 29337792 -72535377 + L1MC4 LINE L1 6615 6703 -1339 190 280 120 40 chr13 29338026 29338151 -72535018 - MIR SINE MIR -50 212 78 258 123 31 77 chr13 29338172 29338237 -72534932 - MSTC LTR MaLR -366 62 1 491 272 37 0 chr13 29338272 29338408 -72534761 - MIR SINE MIR 0 262 122 1948 141 58 0 chr13 29339405 29339731 -72533438 + MER7A DNA MER2_type 3 345 -1 1518 285 30 52 chr13 29340312 29340902 -72532267 - MLT1E LTR MaLR -8 585 9 5770 108 18 11 chr13 29341022 29342419 -72530750 - L1PA14 LINE L1 0 6161 4758 24 0 0 0 chr13 29342881 29342905 -72530264 + AT_rich Low_complexity Low_complexity 1 24 0 2430 61 3 0 chr13 29343083 29343379 -72529790 + AluY SINE Alu 1 297 -14 22 0 0 0 chr13 29343379 29343401 -72529768 + AT_rich Low_complexity Low_complexity 1 22 0 1196 152 17 104 chr13 29344002 29344291 -72528878 + L1MCa LINE L1 620 883 -5543 * 5751 181 14 6 chr13 29344286 29346407 -72526762 + L1PB2 LINE L1 4004 6143 -8 204 40 0 0 chr13 29346408 29346433 -72526736 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 3047 164 79 23 chr13 29346433 29347295 -72525874 + L1MCa LINE L1 888 1895 -4531 23 0 0 0 chr13 29347498 29347521 -72525648 + AT_rich Low_complexity Low_complexity 1 23 0 201 261 17 17 chr13 29347777 29347896 -72525273 + (TA)n Simple_repeat Simple_repeat 1 119 0 338 292 46 46 chr13 29348920 29349160 -72524009 - L1MEd LINE L1 -2025 4104 3865 201 138 0 0 chr13 29349202 29349231 -72523938 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 188 35 35 0 chr13 29349318 29349347 -72523822 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr13 29349362 29349387 -72523782 + AT_rich Low_complexity Low_complexity 1 25 0 1672 154 0 18 chr13 29349424 29349696 -72523473 - AluSx SINE Alu -12 300 34 362 260 82 25 chr13 29350070 29350389 -72522780 - L1MEd LINE L1 -2916 3213 2877 420 294 108 13 chr13 29350419 29350650 -72522519 - L1MEd LINE L1 -3706 2423 2171 373 315 42 32 chr13 29351277 29351493 -72521676 - L1MEd LINE L1 -5340 779 562 25 65 0 0 chr13 29351893 29351939 -72521230 + AT_rich Low_complexity Low_complexity 1 46 0 320 215 13 0 chr13 29352112 29352191 -72520978 - MER116 DNA Mariner 0 80 1 333 0 0 0 chr13 29352459 29352496 -72520673 + (CA)n Simple_repeat Simple_repeat 2 38 0 1676 188 0 10 chr13 29352804 29353112 -72520057 + AluJb SINE Alu 1 305 -7 365 95 16 0 chr13 29353112 29353175 -72519994 + (GA)n Simple_repeat Simple_repeat 1 64 0 249 83 0 0 chr13 29353174 29353210 -72519959 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 * 2406 78 3 0 chr13 29353303 29353612 -72519557 + AluY SINE Alu 1 310 -1 2360 262 69 45 chr13 29353919 29355756 -72517413 - L1MB7 LINE L1 0 6184 4283 1555 199 0 17 chr13 29355769 29356061 -72517108 - AluJo SINE Alu -25 287 1 1851 203 20 29 chr13 29356061 29356504 -72516665 - L1MB2 LINE L1 -45 6126 5688 1064 180 13 9 chr13 29356507 29356740 -72516429 - L1MB2 LINE L1 -949 5197 4964 * 2373 244 34 41 chr13 29356729 29357709 -72515460 + L1MC3 LINE L1 887 7178 -887 1048 238 0 4 chr13 29357716 29357960 -72515209 + L1MC3 LINE L1 7815 8057 -8 29 47 0 0 chr13 29358111 29358154 -72515015 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr13 29362793 29362821 -72510348 + (T)n Simple_repeat Simple_repeat 1 28 0 385 292 93 18 chr13 29363281 29363507 -72509662 + L1ME3A LINE L1 5578 5820 -1988 190 127 14 56 chr13 29363580 29363651 -72509518 + (TA)n Simple_repeat Simple_repeat 1 68 0 517 239 122 10 chr13 29363727 29363932 -72509237 + L1ME3A LINE L1 5729 5956 -214 23 0 0 0 chr13 29364824 29364847 -72508322 + AT_rich Low_complexity Low_complexity 1 23 0 397 263 95 15 chr13 29365906 29366056 -72507113 + MIR SINE MIR 35 194 -63 372 316 92 41 chr13 29366176 29366569 -72506600 + L1ME3A LINE L1 4283 4695 -1451 1192 255 15 7 chr13 29366590 29366861 -72506308 + AluJb SINE Alu 1 273 -39 630 84 28 0 chr13 29366863 29366970 -72506199 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 37 0 0 0 chr13 29367329 29367366 -72505803 + AT_rich Low_complexity Low_complexity 1 37 0 368 361 28 52 chr13 29367553 29367844 -72505325 - L2 LINE L2 -479 2835 2552 2032 88 56 7 chr13 29368706 29368991 -72504178 - AluSg1 SINE Alu -10 299 1 422 348 61 71 chr13 29371254 29371665 -72501504 + L2 LINE L2 2866 3272 0 209 271 0 0 chr13 29372224 29372272 -72500897 + (CA)n Simple_repeat Simple_repeat 1 48 0 960 283 159 25 chr13 29374128 29374734 -72498435 + L1ME3A LINE L1 5472 6166 -4 30 45 0 0 chr13 29374851 29374895 -72498274 + AT_rich Low_complexity Low_complexity 1 44 0 463 360 68 0 chr13 29374995 29375231 -72497938 - MIR SINE MIR -6 256 5 247 291 142 30 chr13 29375399 29375533 -72497636 - L2 LINE L2 -47 3266 3118 256 259 49 0 chr13 29376827 29376908 -72496261 - MIR SINE MIR -46 216 132 1510 181 78 54 chr13 29377704 29378034 -72495135 + MER67C LTR ERV1 1 333 -313 1363 83 0 10 chr13 29378034 29378227 -72494942 + L1PA5 LINE L1 5961 6151 -3 1510 181 78 54 chr13 29378227 29378300 -72494869 + MER67C LTR ERV1 333 403 -243 338 267 163 15 chr13 29378312 29378447 -72494722 + MER67D LTR ERV1 356 510 -4 216 0 0 0 chr13 29378808 29378832 -72494337 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 1805 267 73 13 chr13 29379160 29379755 -72493414 - MLT1E2 LTR MaLR -2 624 1 404 335 22 11 chr13 29379858 29380040 -72493129 - MIR SINE MIR -2 260 77 252 0 0 0 chr13 29380049 29380077 -72493092 + (A)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr13 29380507 29380531 -72492638 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1962 127 7 0 chr13 29380535 29380819 -72492350 - AluSg SINE Alu -24 286 1 205 291 85 48 chr13 29380871 29381036 -72492133 + MIR SINE MIR 66 236 -26 556 142 0 121 chr13 29381886 29382027 -72491142 + FLAM_C SINE Alu 1 124 -9 5516 166 29 9 chr13 29382315 29383718 -72489451 - L1MA8 LINE L1 -11 6280 4851 1138 154 0 5 chr13 29383718 29383913 -72489256 + L1PA13 LINE L1 5970 6163 0 341 308 43 0 chr13 29384233 29384350 -72488819 + MIR SINE MIR 48 169 -93 21 0 0 0 chr13 29384565 29384586 -72488583 + AT_rich Low_complexity Low_complexity 1 21 0 311 292 21 0 chr13 29384596 29384692 -72488477 - L1M4 LINE L1 -1286 4860 4763 238 157 14 57 chr13 29386050 29386120 -72487049 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 400 276 29 0 chr13 29386162 29386267 -72486902 - MIR SINE MIR -89 173 66 25 0 0 0 chr13 29386565 29386590 -72486579 + AT_rich Low_complexity Low_complexity 1 25 0 285 288 116 10 chr13 29386615 29386813 -72486356 + L1MC4a LINE L1 4630 4848 -1298 1155 266 114 47 chr13 29387189 29387848 -72485321 + L1MC4a LINE L1 5283 5985 -1823 180 378 178 7 chr13 29388734 29388869 -72484300 + MIR3 SINE MIR 23 180 -28 24 53 0 0 chr13 29388940 29388978 -72484191 + AT_rich Low_complexity Low_complexity 1 38 0 248 307 13 13 chr13 29389689 29389764 -72483405 - L2 LINE L2 -1 3312 3238 382 341 106 66 chr13 29389854 29389988 -72483181 + L2 LINE L2 257 384 -2930 2510 68 0 0 chr13 29389988 29390299 -72482870 + AluY SINE Alu 1 311 0 382 341 106 66 chr13 29390299 29390695 -72482474 + L2 LINE L2 384 808 -2506 228 135 0 0 chr13 29390908 29390945 -72482224 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 29 0 0 chr13 29391114 29391148 -72482021 + AT_rich Low_complexity Low_complexity 1 34 0 2496 69 0 0 chr13 29391444 29391749 -72481420 + AluY SINE Alu 1 305 -6 249 312 108 45 chr13 29392951 29393265 -72479904 + L2 LINE L2 1737 2070 -1244 559 220 8 30 chr13 29393300 29393432 -72479737 + MER94 DNA DNA 3 131 -3 514 338 33 42 chr13 29393871 29394202 -72478967 - L2 LINE L2 -1164 2150 1823 457 342 24 62 chr13 29394202 29394573 -72478596 + L1M3d LINE L1 421 777 -5526 2405 257 83 33 chr13 29394638 29396920 -72476249 + L1M3d LINE L1 779 3290 -3092 824 292 23 11 chr13 29396967 29397231 -72475938 + LTR16B LTR ERVL 191 457 -7 524 336 89 33 chr13 29397232 29397592 -72475577 - L2 LINE L2 -1528 1786 1407 1569 151 41 33 chr13 29397605 29397970 -72475199 - L1MA8 LINE L1 -13 6278 5911 717 218 6 0 chr13 29398014 29398179 -72474990 - L1M3e LINE L1 -3760 3346 3181 345 224 26 0 chr13 29398184 29398260 -72474909 - L1 LINE L1 -6667 363 286 * 413 274 18 0 chr13 29398256 29398369 -72474800 + L1M3e LINE L1 680 794 -6236 1553 244 73 59 chr13 29398379 29399006 -72474163 - L1M3e LINE L1 -5574 1456 821 355 303 67 25 chr13 29399041 29399160 -72474009 - L2 LINE L2 -2955 359 236 1411 199 162 8 chr13 29399640 29400011 -72473158 - MSTA LTR MaLR 0 428 1 8284 151 24 47 chr13 29400011 29401625 -72471544 - MSTA-int LTR MaLR 0 1580 3 1717 169 146 13 chr13 29401627 29402005 -72471164 - MSTA LTR MaLR 0 428 1 219 356 132 21 chr13 29402077 29402501 -72470668 + L2 LINE L2 1545 2015 -1299 188 238 16 0 chr13 29403478 29403541 -72469628 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 236 81 81 0 chr13 29403601 29403638 -72469531 - MADE1 DNA Mariner 0 80 41 3020 94 7 7 chr13 29403743 29404191 -72468978 - LTR7 LTR ERV1 -2 448 1 300 222 0 0 chr13 29404667 29404739 -72468430 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 205 409 108 16 chr13 29404930 29405253 -72467916 + L3 LINE CR1 236 588 -989 30 59 0 0 chr13 29405925 29405976 -72467193 + AT_rich Low_complexity Low_complexity 1 51 0 296 102 0 17 chr13 29406108 29406167 -72467002 + (TTTA)n Simple_repeat Simple_repeat 1 58 0 13941 193 33 14 chr13 29406168 29407910 -72465259 - L1PB1 LINE L1 -9 6858 5150 254 29 29 0 chr13 29407910 29407945 -72465224 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 13941 193 33 14 chr13 29407945 29410269 -72462900 - L1PB1 LINE L1 -1717 5150 2509 180 0 0 0 chr13 29410269 29410289 -72462880 + (TTA)n Simple_repeat Simple_repeat 2 21 0 13941 193 33 14 chr13 29410289 29412215 -72460954 - L1PB1 LINE L1 -4358 2509 621 1084 183 5 0 chr13 29412203 29412400 -72460769 - L1PB1 LINE L1 -6663 200 3 * 263 295 49 33 chr13 29412402 29412524 -72460645 + L3 LINE CR1 634 757 -820 250 281 10 10 chr13 29412887 29412983 -72460186 - L1ME LINE L1 -276 5845 5750 1513 177 7 40 chr13 29412992 29413292 -72459877 - AluJb SINE Alu -17 295 6 657 173 8 0 chr13 29413299 29413426 -72459743 - FRAM SINE Alu 0 40 1 237 250 42 8 chr13 29413704 29413824 -72459345 + (TA)n Simple_repeat Simple_repeat 2 125 0 884 258 45 38 chr13 29414117 29414381 -72458788 - LTR40a LTR ERVL 0 519 254 513 73 0 0 chr13 29414399 29414467 -72458702 - MADE1 DNA Mariner -1 79 12 * 544 253 122 35 chr13 29414449 29414678 -72458491 - LTR40a LTR ERVL -270 249 1 350 238 82 49 chr13 29414678 29414800 -72458369 - MIR SINE MIR -125 137 12 241 322 70 9 chr13 29416247 29416362 -72456807 - L3 LINE CR1 -14 1563 1442 1729 127 44 29 chr13 29416455 29416760 -72456409 + AluSx SINE Alu 3 311 0 2104 107 0 0 chr13 29417521 29417829 -72455340 + AluSg1 SINE Alu 1 308 0 1225 188 11 15 chr13 29419101 29419367 -72453802 + L1MB7 LINE L1 5902 6166 -18 21 0 0 0 chr13 29419543 29419564 -72453605 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 29419860 29419896 -72453273 + AT_rich Low_complexity Low_complexity 1 36 0 706 240 0 0 chr13 29420304 29420450 -72452719 - FRAM SINE Alu -16 160 15 21 0 0 0 chr13 29420880 29420901 -72452268 + AT_rich Low_complexity Low_complexity 1 21 0 317 321 9 0 chr13 29420964 29421076 -72452093 + (CA)n Simple_repeat Simple_repeat 1 113 0 21 0 0 0 chr13 29421991 29422012 -72451157 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 29422172 29422212 -72450957 + AT_rich Low_complexity Low_complexity 1 40 0 2619 20 7 3 chr13 29422564 29422870 -72450299 - AluY SINE Alu -4 307 1 345 24 0 0 chr13 29423091 29423133 -72450036 + (CA)n Simple_repeat Simple_repeat 1 42 0 240 238 0 0 chr13 29425637 29425700 -72447469 + (TA)n Simple_repeat Simple_repeat 2 64 0 3861 167 127 28 chr13 29425702 29426535 -72446634 + MER21A LTR ERV1 16 931 0 21 0 0 0 chr13 29426893 29426914 -72446255 + AT_rich Low_complexity Low_complexity 1 21 0 264 300 50 10 chr13 29427852 29427952 -72445217 - LOR1-int LTR ERV1 -1613 6507 6404 846 248 125 20 chr13 29429019 29429471 -72443698 + MLT1E LTR MaLR 1 593 0 527 338 15 0 chr13 29429527 29429725 -72443444 + L2 LINE L2 2316 2516 -798 338 363 21 32 chr13 29429790 29429841 -72443328 + L2 LINE L2 2710 2760 -554 2284 83 10 13 chr13 29429841 29430142 -72443027 - AluY SINE Alu -11 300 1 338 363 21 32 chr13 29430142 29430280 -72442889 + L2 LINE L2 2760 2897 -417 284 102 20 0 chr13 29430570 29430619 -72442550 + (TC)n Simple_repeat Simple_repeat 2 51 0 195 42 0 0 chr13 29430619 29430643 -72442526 + (CA)n Simple_repeat Simple_repeat 1 24 0 371 336 38 21 chr13 29431185 29431423 -72441746 + L1MEc LINE L1 23 264 -6132 728 188 50 17 chr13 29431487 29431668 -72441501 + L1MB2 LINE L1 5985 6171 0 642 255 79 5 chr13 29431684 29431900 -72441269 + L1MEc LINE L1 2171 2402 -3994 568 230 44 96 chr13 29431923 29432133 -72441036 - MLT1E3 LTR MaLR -177 447 207 521 186 8 0 chr13 29432141 29432270 -72440899 + CT-rich Low_complexity Low_complexity 1 130 0 1154 232 54 14 chr13 29432281 29432578 -72440591 - MLT1E1 LTR MaLR -345 309 1 21 0 0 0 chr13 29432821 29432842 -72440327 + AT_rich Low_complexity Low_complexity 1 21 0 1106 194 5 22 chr13 29432872 29433094 -72440075 - AluJb SINE Alu -8 304 87 304 283 24 24 chr13 29434782 29434948 -72438221 + (CA)n Simple_repeat Simple_repeat 2 167 0 320 311 76 8 chr13 29435593 29435725 -72437444 - MER5A DNA MER1_type -6 183 43 2051 213 129 6 chr13 29436059 29436562 -72436607 + MER70B LTR ERVL 5 569 -9 1739 179 30 0 chr13 29436699 29436995 -72436174 - AluSx SINE Alu -7 305 1 258 200 0 18 chr13 29437811 29437866 -72435303 + CT-rich Low_complexity Low_complexity 2 55 0 366 23 0 0 chr13 29437886 29437929 -72435240 + (CA)n Simple_repeat Simple_repeat 2 44 0 216 0 0 0 chr13 29438863 29438887 -72434282 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 372 316 0 0 chr13 29439184 29439342 -72433827 + (CATATA)n Simple_repeat Simple_repeat 5 162 0 1866 151 83 14 chr13 29439683 29440034 -72433135 - THE1C LTR MaLR 0 375 1 1369 296 54 28 chr13 29440086 29440620 -72432549 - MLT1H1 LTR MaLR -7 548 1 718 276 104 5 chr13 29440770 29440991 -72432178 - MIR SINE MIR -14 248 6 2773 19 0 0 chr13 29441431 29441741 -72431428 + AluYa5 SINE Alu 1 310 -1 27 0 0 0 chr13 29443061 29443088 -72430081 + AT_rich Low_complexity Low_complexity 1 27 0 199 114 0 91 chr13 29443644 29443688 -72429481 + L2 LINE L2 3274 3313 0 747 144 20 13 chr13 29444288 29444441 -72428728 + GA-rich Low_complexity Low_complexity 1 154 0 258 105 0 0 chr13 29445316 29445354 -72427815 + (GA)n Simple_repeat Simple_repeat 2 39 0 1897 131 117 0 chr13 29446323 29446673 -72426496 - L1PA13 LINE L1 0 6163 5773 25 0 0 0 chr13 29447203 29447228 -72425941 + AT_rich Low_complexity Low_complexity 1 25 0 2342 103 60 0 chr13 29447948 29448298 -72424871 + THE1C LTR MaLR 5 375 0 8407 131 45 66 chr13 29448298 29448498 -72424671 + THE1C-int LTR MaLR 1 204 -1376 1997 155 3 0 chr13 29448498 29448807 -72424362 + AluSx SINE Alu 1 310 -2 8407 131 45 66 chr13 29448807 29450219 -72422950 + THE1C-int LTR MaLR 204 1580 0 2375 134 13 5 chr13 29450219 29450591 -72422578 + THE1C LTR MaLR 1 375 0 193 351 81 56 chr13 29450842 29451127 -72422042 + L2 LINE L2 1839 2130 -1184 293 360 38 42 chr13 29451155 29451391 -72421778 + L2 LINE L2 2208 2442 -872 22 35 0 0 chr13 29453257 29453286 -72419883 + AT_rich Low_complexity Low_complexity 1 29 0 1855 147 0 13 chr13 29454629 29454928 -72418241 - AluSx SINE Alu -17 295 1 230 343 80 23 chr13 29456459 29456634 -72416535 - L2 LINE L2 -116 3197 3013 1181 123 0 0 chr13 29456643 29456822 -72416347 - L1PA16 LINE L1 -441 5725 5547 2386 139 40 31 chr13 29456822 29457244 -72415925 + L1PA16 LINE L1 5729 6157 -9 300 27 0 0 chr13 29457331 29457368 -72415801 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 0 0 0 chr13 29457920 29457948 -72415221 + AT_rich Low_complexity Low_complexity 1 28 0 1377 222 104 43 chr13 29458001 29458626 -72414543 + L1ME1 LINE L1 3851 4513 -1633 1936 246 21 34 chr13 29458746 29459376 -72413793 + L1ME1 LINE L1 5215 5835 -331 3767 147 7 2 chr13 29459425 29460031 -72413138 + L1PA14 LINE L1 5505 6113 -48 22 56 0 0 chr13 29460091 29460127 -72413042 + AT_rich Low_complexity Low_complexity 1 36 0 240 200 70 20 chr13 29460214 29460314 -72412855 + L1M4 LINE L1 4301 4405 -1741 612 265 100 71 chr13 29460347 29460656 -72412513 + L2 LINE L2 2988 3305 -8 547 240 27 28 chr13 29460657 29460866 -72412303 + L1ME1 LINE L1 5821 6023 -143 259 329 0 0 chr13 29461540 29461625 -72411544 + L1ME1 LINE L1 6010 6094 -72 33 25 0 0 chr13 29461625 29461665 -72411504 + AT_rich Low_complexity Low_complexity 1 40 0 439 85 57 40 chr13 29461673 29461850 -72411319 + (TA)n Simple_repeat Simple_repeat 1 180 0 292 331 67 44 chr13 29462007 29462533 -72410636 + HAL1b LINE L1 69 606 -742 1425 235 19 30 chr13 29462934 29463300 -72409869 - MLT1A1 LTR MaLR 0 365 4 750 253 103 82 chr13 29463353 29463901 -72409268 + L1MC5 LINE L1 6597 7078 -883 550 266 112 23 chr13 29463914 29464173 -72408996 + L1MC5 LINE L1 7249 7530 -431 28 29 0 0 chr13 29467024 29467059 -72406110 + AT_rich Low_complexity Low_complexity 1 35 0 2504 56 0 0 chr13 29467070 29467376 -72405793 + AluY SINE Alu 1 306 -5 2247 100 3 28 chr13 29467729 29468048 -72405121 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr13 29468642 29468664 -72404505 + AT_rich Low_complexity Low_complexity 1 22 0 255 242 0 0 chr13 29469009 29469071 -72404098 + T-rich Low_complexity Low_complexity 1 62 0 987 119 6 31 chr13 29469213 29469373 -72403796 + MER54B LTR ERVL 1 156 -637 38 22 0 0 chr13 29469417 29469462 -72403707 + AT_rich Low_complexity Low_complexity 1 45 0 3085 206 41 17 chr13 29469478 29470113 -72403056 + MER54B LTR ERVL 144 793 0 241 269 39 10 chr13 29470660 29470764 -72402405 + (TA)n Simple_repeat Simple_repeat 1 107 0 360 0 0 0 chr13 29470815 29470855 -72402314 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 281 26 26 0 chr13 29470854 29470892 -72402277 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 454 174 0 0 chr13 29470944 29471030 -72402139 - L1MB1 LINE L1 0 6168 6083 24 32 0 0 chr13 29472308 29472339 -72400830 + AT_rich Low_complexity Low_complexity 1 31 0 241 314 112 25 chr13 29472664 29472906 -72400263 - L2 LINE L2 -1210 2104 1842 30 45 0 0 chr13 29474583 29474627 -72398542 + AT_rich Low_complexity Low_complexity 1 44 0 2273 97 3 0 chr13 29475161 29475459 -72397710 + AluSx SINE Alu 1 299 -13 231 331 83 32 chr13 29475988 29476145 -72397024 + L3 LINE CR1 1185 1349 -228 226 187 22 55 chr13 29476237 29476328 -72396841 + (TATAA)n Simple_repeat Simple_repeat 4 91 0 1055 279 28 45 chr13 29476579 29476938 -72396231 + MLT1H1 LTR MaLR 195 547 -8 454 322 0 0 chr13 29477133 29477276 -72395893 + MLT1-int LTR MaLR 399 541 -830 1703 113 0 0 chr13 29477981 29478220 -72394949 + AluSq SINE Alu 1 239 -74 1051 104 7 0 chr13 29478225 29478369 -72394800 + AluSg/x SINE Alu 156 300 -12 340 303 23 8 chr13 29478690 29478822 -72394347 + MLT1H1 LTR MaLR 3 136 -454 908 104 42 7 chr13 29478842 29478986 -72394183 - MSTA LTR MaLR -279 149 1 789 316 33 11 chr13 29479413 29479688 -72393481 + MLT1H1 LTR MaLR 175 455 -100 189 0 0 0 chr13 29479791 29479812 -72393357 + (TC)n Simple_repeat Simple_repeat 1 21 0 311 237 119 68 chr13 29480833 29481010 -72392159 - LTR41 LTR ERVL -1 772 587 426 335 138 45 chr13 29481859 29482256 -72390913 - L2 LINE L2 0 3313 2880 231 303 77 58 chr13 29482328 29482483 -72390686 + MIR SINE MIR 91 248 -14 1357 225 26 0 chr13 29484173 29484484 -72388685 + MER67C LTR ERV1 1 319 -391 2351 226 53 42 chr13 29484484 29485589 -72387580 + LTR27 LTR ERV1 3 1755 0 1204 164 18 91 chr13 29485593 29485867 -72387302 + MER67C LTR ERV1 320 573 -137 1509 141 42 157 chr13 29485869 29486252 -72386917 - MER1B DNA MER1_type 0 339 1 862 123 36 0 chr13 29486252 29486390 -72386779 + MER67C LTR ERV1 568 710 0 14433 220 14 7 chr13 29487378 29487734 -72385435 - L1PB1 LINE L1 -8 6143 5791 261 83 0 0 chr13 29487734 29487770 -72385399 + (TA)n Simple_repeat Simple_repeat 2 37 0 14433 220 14 7 chr13 29487770 29492058 -72381111 - L1PB1 LINE L1 -360 5791 1479 2249 94 3 0 chr13 29492269 29492567 -72380602 - AluY SINE Alu -12 299 1 189 121 0 0 chr13 29493089 29493122 -72380047 + (TG)n Simple_repeat Simple_repeat 1 33 0 2964 172 78 17 chr13 29493125 29493137 -72380032 + MER4D LTR ERV1 1 11 -892 207 0 0 0 chr13 29493137 29493160 -72380009 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2964 172 78 17 chr13 29493160 29493791 -72379378 + MER4D LTR ERV1 11 683 -220 1136 237 36 23 chr13 29493807 29494154 -72379015 - LTR43 LTR ERV1 -59 461 195 821 177 146 42 chr13 29494368 29494475 -72378694 + MER4D LTR ERV1 680 774 -129 2416 126 20 3 chr13 29494475 29494833 -72378336 - THE1B LTR MaLR 0 364 1 821 177 146 42 chr13 29494833 29494917 -72378252 + MER4D LTR ERV1 774 891 -12 250 290 97 41 chr13 29495395 29495540 -72377629 + HAL1 LINE L1 349 501 -2006 2043 150 33 31 chr13 29495573 29495932 -72377237 - THE1B LTR MaLR 0 364 5 2054 130 6 62 chr13 29497499 29497852 -72375317 - MER1B DNA MER1_type 0 339 7 311 250 14 0 chr13 29497865 29497937 -72375232 - U6 snRNA snRNA -31 76 4 414 349 13 13 chr13 29498930 29499082 -72374087 + MER91A DNA MER1_type 2 153 -43 24 0 0 0 chr13 29499563 29499587 -72373582 + AT_rich Low_complexity Low_complexity 1 24 0 334 286 6 30 chr13 29499605 29499747 -72373422 + (TA)n Simple_repeat Simple_repeat 2 141 -24 297 0 0 0 chr13 29499747 29499780 -72373389 + (TG)n Simple_repeat Simple_repeat 2 34 0 334 286 6 30 chr13 29499780 29499805 -72373364 + (TA)n Simple_repeat Simple_repeat 141 165 0 24 0 0 0 chr13 29500441 29500465 -72372704 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 29500819 29500848 -72372321 + AT_rich Low_complexity Low_complexity 1 29 0 320 310 31 85 chr13 29501497 29501755 -72371414 - MIR SINE MIR -16 246 3 1092 221 32 59 chr13 29504080 29504233 -72368936 + MSTD LTR MaLR 1 157 -239 2187 73 24 3 chr13 29504233 29504520 -72368649 + AluY SINE Alu 1 293 -18 1092 221 32 59 chr13 29504520 29504847 -72368322 + MSTD LTR MaLR 157 396 0 213 310 17 0 chr13 29504930 29504988 -72368181 + L2 LINE L2 3250 3308 -5 21 0 0 0 chr13 29505014 29505035 -72368134 + AT_rich Low_complexity Low_complexity 1 21 0 1591 224 43 6 chr13 29506026 29506378 -72366791 - MLT1A1 LTR MaLR 0 365 1 26 30 0 0 chr13 29506493 29506526 -72366643 + AT_rich Low_complexity Low_complexity 1 33 0 2379 74 0 0 chr13 29508042 29508367 -72364802 - AluY SINE Alu 0 311 1 317 319 75 65 chr13 29508652 29509195 -72363974 - L2 LINE L2 -1201 2113 1565 186 167 0 0 chr13 29509255 29509291 -72363878 + T-rich Low_complexity Low_complexity 1 36 0 185 233 17 50 chr13 29510122 29510164 -72363005 + L3b LINE CR1 1526 1567 -16 2363 59 3 0 chr13 29510164 29510502 -72362667 - AluY SINE Alu 0 311 1 185 233 17 50 chr13 29510502 29510519 -72362650 + L3b LINE CR1 1567 1583 0 498 271 93 100 chr13 29510520 29510940 -72362229 - LTR33A LTR ERVL 0 523 107 1831 230 98 29 chr13 29511501 29512198 -72360971 - L1MDa LINE L1 -4434 2106 1362 901 279 92 45 chr13 29512195 29512664 -72360505 - L1MDa LINE L1 -5914 629 139 * 932 235 39 0 chr13 29512679 29512883 -72360286 + MER20 DNA MER1_type 1 212 -7 312 403 16 0 chr13 29514138 29514267 -72358902 + L2 LINE L2 3107 3237 -35 2126 109 0 10 chr13 29514307 29514601 -72358568 + AluSg SINE Alu 1 291 -19 189 0 0 0 chr13 29514604 29514625 -72358544 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 315 197 26 26 chr13 29515214 29515290 -72357879 + Tigger2 DNA MER2_type 2 77 -2641 547 165 16 71 chr13 29515353 29515480 -72357689 + AluJo SINE Alu 4 123 -189 2377 214 11 11 chr13 29515499 29516070 -72357099 - L1PB3 LINE L1 -1693 4453 3883 5251 189 63 38 chr13 29516070 29517682 -72355487 + L1PB3 LINE L1 4479 6150 -4 919 207 16 0 chr13 29517689 29517877 -72355292 + AluJo SINE Alu 120 310 -2 339 65 0 0 chr13 29518010 29518056 -72355113 + (TG)n Simple_repeat Simple_repeat 1 46 0 704 177 0 7 chr13 29518364 29518511 -72354658 + CT-rich Low_complexity Low_complexity 2 147 0 763 185 8 0 chr13 29518511 29518641 -72354528 - FLAM_A SINE Alu -1 132 2 985 131 17 0 chr13 29518705 29518880 -72354289 + CT-rich Low_complexity Low_complexity 3 180 0 2005 245 35 53 chr13 29518908 29519508 -72353661 - MER77 LTR ERV1 -8 597 9 594 312 85 7 chr13 29519531 29519813 -72353356 - L1ME3 LINE L1 -24 6138 5835 502 243 81 0 chr13 29519821 29519994 -72353175 + L1M4 LINE L1 3750 3936 -2210 493 264 159 64 chr13 29520031 29520451 -72352718 - L1ME3 LINE L1 -371 5791 5332 237 70 0 0 chr13 29520523 29520566 -72352603 + L1M4 LINE L1 5258 5300 -846 256 257 29 9 chr13 29520632 29520737 -72352432 + (TA)n Simple_repeat Simple_repeat 1 107 0 1063 246 74 36 chr13 29520908 29521461 -72351708 - L1ME3 LINE L1 -1329 4817 4244 1433 206 105 34 chr13 29521570 29522980 -72350189 - L1PBa LINE L1 -5204 1659 6 1574 222 33 18 chr13 29523962 29524295 -72348874 + MLT1A1 LTR MaLR 28 365 0 474 208 10 10 chr13 29524767 29524863 -72348306 + MLT1C LTR MaLR 372 467 0 321 316 84 7 chr13 29524956 29525111 -72348058 + MER69A DNA AcHobo 10 176 -1 6246 149 59 14 chr13 29525367 29526545 -72346624 + Tigger3b DNA MER2_type 1 1231 0 2822 98 62 7 chr13 29526640 29527060 -72346109 - MLT2A1 LTR ERVL -1 443 1 268 359 47 26 chr13 29527268 29527460 -72345709 - L2 LINE L2 -989 2325 2130 25 0 0 0 chr13 29527543 29527568 -72345601 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr13 29528008 29528043 -72345126 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 29528302 29528324 -72344845 + AT_rich Low_complexity Low_complexity 1 22 0 180 125 0 0 chr13 29528593 29528625 -72344544 + (TTC)n Simple_repeat Simple_repeat 2 33 0 195 42 0 0 chr13 29529316 29529340 -72343829 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 378 221 47 12 chr13 29529346 29529432 -72343737 - L2 LINE L2 -1 3312 3224 22 35 0 0 chr13 29529641 29529670 -72343499 + AT_rich Low_complexity Low_complexity 1 29 0 225 330 34 17 chr13 29529687 29529805 -72343364 - L2 LINE L2 -495 2819 2700 336 316 76 51 chr13 29529810 29530047 -72343122 - MIR SINE MIR 0 262 20 2318 164 36 2 chr13 29530113 29530527 -72342642 - MSTA LTR MaLR 0 428 1 1931 214 86 8 chr13 29530970 29531447 -72341722 - MLT2B2 LTR ERVL -1 514 1 1693 192 0 10 chr13 29532221 29532518 -72340651 - AluJb SINE Alu -17 295 2 820 207 57 141 chr13 29533609 29534048 -72339121 + MER31B LTR ERV1 22 423 -43 532 304 45 32 chr13 29535681 29535713 -72337456 + HAL1 LINE L1 1853 1883 -624 1160 214 55 78 chr13 29535713 29536096 -72337073 - MLT1A2 LTR MaLR 0 374 1 532 304 45 32 chr13 29536096 29536419 -72336750 + HAL1 LINE L1 1883 2211 -296 221 270 0 16 chr13 29536718 29536781 -72336388 + A-rich Low_complexity Low_complexity 4 65 0 191 313 0 16 chr13 29536790 29536854 -72336315 + L2 LINE L2 1362 1424 -1890 355 347 70 86 chr13 29537718 29538343 -72334826 + L2 LINE L2 2257 2871 -443 1839 259 95 52 chr13 29538707 29539774 -72333395 - L1MDa LINE L1 -2189 4351 3332 375 23 0 0 chr13 29539774 29539818 -72333351 + (TA)n Simple_repeat Simple_repeat 1 44 0 1960 113 0 7 chr13 29539819 29540102 -72333067 - AluY SINE Alu -30 281 1 1839 259 95 52 chr13 29540102 29540758 -72332411 - L1MDa LINE L1 -3207 3333 2556 2020 144 29 47 chr13 29541495 29541533 -72331636 + THE1C LTR MaLR 1 38 -337 2048 128 0 3 chr13 29541533 29541823 -72331346 - AluSx SINE Alu -3 309 21 2020 144 29 47 chr13 29541823 29542166 -72331003 + THE1C LTR MaLR 38 375 0 1070 258 87 43 chr13 29542747 29544263 -72328906 - L1MDa LINE L1 -2463 4077 2351 1451 241 111 29 chr13 29544492 29544704 -72328465 + L1MB5 LINE L1 5558 5751 -423 315 0 0 0 chr13 29544704 29544739 -72328430 + (CA)n Simple_repeat Simple_repeat 2 36 0 1451 241 111 29 chr13 29544739 29545097 -72328072 + L1MB5 LINE L1 5751 6172 -2 1602 154 4 26 chr13 29545319 29545585 -72327584 - MER4E LTR ERV1 -3 776 517 2436 102 18 21 chr13 29545663 29546045 -72327124 - L1MA1 LINE L1 -16 6286 5906 3346 160 61 8 chr13 29546045 29546639 -72326530 - MER4D LTR ERV1 -278 625 1 22 0 0 0 chr13 29548075 29548097 -72325072 + AT_rich Low_complexity Low_complexity 1 22 0 2311 137 11 6 chr13 29549192 29549549 -72323620 + THE1B LTR MaLR 6 364 0 867 206 100 74 chr13 29549596 29550068 -72323101 + MER39 LTR ERV1 1 707 0 926 184 55 78 chr13 29550183 29550492 -72322677 - MER33 DNA MER1_type -22 302 1 575 196 89 0 chr13 29550698 29550810 -72322359 - FLAM_A SINE Alu -11 122 1 282 265 224 7 chr13 29551192 29551339 -72321830 + MIR SINE MIR 84 262 0 23 0 0 0 chr13 29551441 29551464 -72321705 + AT_rich Low_complexity Low_complexity 1 23 0 682 213 85 6 chr13 29552182 29552346 -72320823 - MER5B DNA MER1_type -1 177 1 21 57 0 0 chr13 29553189 29553224 -72319945 + AT_rich Low_complexity Low_complexity 1 35 0 28 61 0 0 chr13 29553663 29553712 -72319457 + AT_rich Low_complexity Low_complexity 1 49 0 475 265 42 84 chr13 29554119 29554357 -72318812 + HAL1 LINE L1 17 244 -2263 1300 206 102 83 chr13 29554746 29554775 -72318394 + MLT1D LTR MaLR 9 36 -469 2417 70 0 3 chr13 29554775 29555087 -72318082 - AluY SINE Alu 0 311 1 1300 206 102 83 chr13 29555087 29555537 -72317632 + MLT1D LTR MaLR 36 497 -8 2083 107 10 10 chr13 29555624 29555924 -72317245 - AluSx SINE Alu -8 304 5 4422 212 42 24 chr13 29606125 29607765 -72265404 + L1M1 LINE L1 2491 4167 -3398 5375 144 2 2 chr13 29607768 29608624 -72264545 - L1PA15 LINE L1 0 6165 5310 3653 201 19 16 chr13 29608622 29608645 -72264524 + L1M1 LINE L1 4153 4174 -3391 * 2228 101 0 3 chr13 29608645 29608942 -72264227 - AluSc SINE Alu -12 297 2 3653 201 19 16 chr13 29608942 29609807 -72263362 + L1M1 LINE L1 4174 5044 -2521 226 380 22 22 chr13 29610105 29610197 -72262972 + MIR SINE MIR 3 94 -168 639 288 81 28 chr13 29610439 29610724 -72262445 + LTR33 LTR ERVL 209 508 -13 25 31 0 0 chr13 29610955 29610987 -72262182 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr13 29611876 29611900 -72261269 + AT_rich Low_complexity Low_complexity 1 24 0 32 67 0 0 chr13 29614298 29614358 -72258811 + AT_rich Low_complexity Low_complexity 1 60 0 6163 163 17 41 chr13 29614402 29615318 -72257851 + L1P4 LINE L1 4073 4929 -1236 2199 110 3 3 chr13 29615318 29615628 -72257541 + AluSx SINE Alu 1 310 -2 6163 163 17 41 chr13 29615628 29616294 -72256875 + L1P4 LINE L1 4929 5610 -555 755 165 0 0 chr13 29616294 29616415 -72256754 + L1P4 LINE L1 5545 5665 -500 207 139 0 0 chr13 29616431 29616467 -72256702 + (TA)n Simple_repeat Simple_repeat 1 36 0 843 162 7 73 chr13 29616485 29616695 -72256474 + MLT2A2 LTR ERVL 293 453 0 3589 260 58 36 chr13 29616695 29617290 -72255879 + L1PB3 LINE L1 771 1351 -4852 2820 10 0 0 chr13 29617290 29617601 -72255568 + AluYb8 SINE Alu 1 311 -7 2030 154 0 0 chr13 29617611 29617916 -72255253 + AluSc SINE Alu 3 307 -2 3589 260 58 36 chr13 29617916 29619087 -72254082 + L1PB3 LINE L1 1359 2596 -3607 * 26457 142 7 9 chr13 29619085 29625461 -72247708 + L1PA8A LINE L1 5 6428 -18 207 0 0 0 chr13 29625465 29625488 -72247681 + (TAA)n Simple_repeat Simple_repeat 2 24 0 10703 192 49 25 chr13 29625490 29626160 -72247009 + L1PB3 LINE L1 2589 3242 -2969 188 83 0 28 chr13 29626160 29626196 -72246973 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 10703 192 49 25 chr13 29626196 29628225 -72244944 + L1PB3 LINE L1 3242 5392 -819 2462 54 0 0 chr13 29628225 29628520 -72244649 + AluY SINE Alu 1 295 -16 10703 192 49 25 chr13 29628520 29629358 -72243811 + L1PB3 LINE L1 5392 6209 -2 34 24 0 0 chr13 29629483 29629524 -72243645 + AT_rich Low_complexity Low_complexity 1 41 0 2824 10 0 0 chr13 29629578 29629890 -72243279 - AluYb8 SINE Alu -6 312 1 1095 222 4 11 chr13 29630817 29631078 -72242091 - L1M4 LINE L1 -3242 2904 2646 507 33 0 0 chr13 29632636 29632697 -72240472 + (TA)n Simple_repeat Simple_repeat 2 62 0 351 0 0 0 chr13 29632696 29632735 -72240434 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 21 0 0 0 chr13 29634006 29634027 -72239142 + AT_rich Low_complexity Low_complexity 1 21 0 262 330 11 96 chr13 29634816 29635004 -72238165 + L2 LINE L2 2584 2755 -559 324 234 117 0 chr13 29635290 29635384 -72237785 + L2 LINE L2 3205 3309 -4 2253 121 0 9 chr13 29636098 29636445 -72236724 - HERVH LTR ERV1 -3878 3835 3492 890 140 7 0 chr13 29636435 29636585 -72236584 - HERVH LTR ERV1 -4423 3290 3140 * 10886 83 6 8 chr13 29636579 29638317 -72234852 - HERVH LTR ERV1 -4726 2987 1251 2909 50 5 8 chr13 29638317 29638700 -72234469 - LTR7 LTR ERV1 -68 382 1 4786 216 34 17 chr13 29638700 29639075 -72234094 - L1MC1 LINE L1 -352 5964 5597 6980 97 11 2 chr13 29639075 29640035 -72233134 + LTR5 LTR ERVK 1 969 0 4786 216 34 17 chr13 29640035 29641808 -72231361 - L1MC1 LINE L1 -719 5597 3782 28 48 0 0 chr13 29641815 29641857 -72231312 + AT_rich Low_complexity Low_complexity 1 42 0 273 432 0 32 chr13 29642915 29643070 -72230099 + L2 LINE L2 3117 3266 -6 208 308 0 0 chr13 29643662 29643727 -72229442 + L2 LINE L2 2997 3061 -252 2064 165 86 8 chr13 29644523 29644918 -72228251 - MSTB LTR MaLR 0 426 1 1178 245 77 9 chr13 29644945 29645284 -72227885 - MLT1D LTR MaLR -4 501 140 501 313 96 59 chr13 29645929 29646252 -72226917 - L1MC1 LINE L1 -4880 1239 905 229 318 36 27 chr13 29646989 29647099 -72226070 + L2 LINE L2 3154 3264 -8 886 247 0 5 chr13 29647483 29647669 -72225500 - MLT1A1 LTR MaLR -180 185 1 1443 262 58 33 chr13 29647674 29648774 -72224395 + L1ME1 LINE L1 4920 6157 -9 1989 179 174 116 chr13 29648824 29649105 -72224064 + L1MC3 LINE L1 6793 7056 -729 225 247 94 12 chr13 29649105 29649190 -72223979 + MLT1F1 LTR MaLR 42 133 -434 1989 179 174 116 chr13 29649190 29649612 -72223557 + L1MC3 LINE L1 7056 7626 -159 398 235 157 0 chr13 29649701 29649816 -72223353 + L1MC3 LINE L1 6788 6920 -865 931 134 0 35 chr13 29649847 29650019 -72223150 + L1MC3 LINE L1 7620 7785 0 21 36 0 0 chr13 29651842 29651870 -72221299 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 29652829 29652853 -72220316 + AT_rich Low_complexity Low_complexity 1 24 0 251 261 0 0 chr13 29652973 29653042 -72220127 + (CTA)n Simple_repeat Simple_repeat 2 70 0 5747 108 25 12 chr13 29653079 29654427 -72218742 - L1PA13 LINE L1 0 6163 4795 1915 272 60 43 chr13 29656604 29657473 -72215696 + L1M4 LINE L1 4332 5154 -992 1963 126 10 7 chr13 29657473 29657766 -72215403 + AluSq SINE Alu 1 294 -19 1915 272 60 43 chr13 29657766 29657994 -72215175 + L1M4 LINE L1 5154 5377 -769 183 327 140 0 chr13 29658337 29658444 -72214725 + L2 LINE L2 2963 3084 -229 1522 47 0 0 chr13 29658490 29658790 -72214379 - L1PA5 LINE L1 -4 6150 5798 21 0 0 0 chr13 29660077 29660098 -72213071 + AT_rich Low_complexity Low_complexity 1 21 0 435 281 116 18 chr13 29660248 29660412 -72212757 - MIR SINE MIR -74 188 9 283 250 150 36 chr13 29660598 29660738 -72212431 - L2 LINE L2 0 3313 3158 309 258 0 30 chr13 29661401 29661467 -72211702 + Tigger3b DNA MER2_type 5 68 -1163 1165 155 163 47 chr13 29661468 29661726 -72211443 - AluJo SINE Alu -16 296 9 6366 120 31 65 chr13 29661733 29662942 -72210227 + Tigger3b DNA MER2_type 65 1231 0 953 228 28 5 chr13 29663483 29663694 -72209475 + MER58A DNA MER1_type 1 216 -8 182 416 26 0 chr13 29663862 29663939 -72209230 + L2 LINE L2 3200 3278 -35 262 355 137 0 chr13 29665696 29665820 -72207349 - MIR3 SINE MIR -17 191 51 1153 307 43 38 chr13 29666299 29667061 -72206108 - L2 LINE L2 0 3313 2552 683 238 41 17 chr13 29667072 29667244 -72205925 + MER8 DNA MER2_type 2 177 -62 246 224 103 0 chr13 29667220 29667278 -72205891 + MER2 DNA MER2_type 281 344 -1 * 386 140 0 0 chr13 29667292 29667349 -72205820 - Tigger2 DNA MER2_type -2661 57 1 1020 261 68 12 chr13 29667350 29667675 -72205494 - L2 LINE L2 -776 2538 2196 235 261 15 0 chr13 29667736 29667801 -72205368 - L1MEd LINE L1 -5394 725 660 406 347 65 44 chr13 29667959 29668417 -72204752 + L1MB2 LINE L1 2576 3043 -3103 31 58 0 0 chr13 29668599 29668651 -72204518 + AT_rich Low_complexity Low_complexity 1 52 0 303 318 12 12 chr13 29668806 29668979 -72204190 + (TA)n Simple_repeat Simple_repeat 1 173 0 21 0 0 0 chr13 29669194 29669215 -72203954 + AT_rich Low_complexity Low_complexity 1 21 0 4820 217 25 23 chr13 29669243 29671346 -72201823 + L1MB2 LINE L1 3985 6094 -77 320 324 116 34 chr13 29671418 29671884 -72201285 + L1MC4a LINE L1 4329 4832 -1314 1042 166 215 12 chr13 29671964 29672211 -72200958 + AluSx SINE Alu 1 297 -5 485 319 84 26 chr13 29672615 29673188 -72199981 + L1MC4a LINE L1 5304 5909 -1899 438 200 30 20 chr13 29673693 29673793 -72199376 - L2 LINE L2 -1 3312 3212 301 298 39 60 chr13 29674112 29674313 -72198856 - MIR SINE MIR -45 217 22 23 54 0 0 chr13 29674644 29674681 -72198488 + AT_rich Low_complexity Low_complexity 1 37 0 254 351 57 18 chr13 29676360 29676523 -72196646 + MIR SINE MIR 13 177 -69 2122 249 65 75 chr13 29677997 29679486 -72193683 + L1ME2 LINE L1 2611 4085 -2061 430 240 10 0 chr13 29679509 29679613 -72193556 - MER70B LTR ERVL -18 560 456 383 192 48 64 chr13 29680054 29680179 -72192990 + L1ME2 LINE L1 4078 4200 -1946 1320 275 50 16 chr13 29680220 29680776 -72192393 + L1ME2 LINE L1 4276 4850 -1296 322 248 24 80 chr13 29680789 29680914 -72192255 + L1ME2 LINE L1 4906 5023 -1123 377 205 262 22 chr13 29681011 29681233 -72191936 + L1ME2 LINE L1 5161 5432 -743 2229 166 42 7 chr13 29681233 29681642 -72191527 + MER39B LTR ERV1 1 423 -230 1029 25 57 6 chr13 29681649 29681807 -72191362 + (TTTC)n Simple_repeat Simple_repeat 3 168 0 38931 71 20 3 chr13 29681816 29687857 -72185312 - L1PA5 LINE L1 -7 6147 1 1061 199 8 25 chr13 29687863 29688099 -72185070 + MER39B LTR ERV1 422 653 0 1970 245 73 20 chr13 29688099 29688314 -72184855 + L1ME2 LINE L1 5429 5631 -533 2186 149 8 3 chr13 29688314 29688676 -72184493 - THE1B LTR MaLR 0 364 1 1970 245 73 20 chr13 29688676 29689158 -72184011 + L1ME2 LINE L1 5631 6163 -1 230 369 47 27 chr13 29689411 29689560 -72183609 + L2 LINE L2 2936 3087 -185 239 280 110 10 chr13 29689848 29689948 -72183221 - MIR SINE MIR -7 255 146 2148 156 31 14 chr13 29691401 29691759 -72181410 - THE1B LTR MaLR 0 364 1 1468 246 55 19 chr13 29692617 29693123 -72180046 - LTR28 LTR ERV1 -1 511 1 225 270 148 0 chr13 29694391 29694459 -72178710 + MIR SINE MIR 72 141 -67 2647 133 51 0 chr13 29694531 29694944 -72178225 + MER57B LTR ERV1 1 434 0 1687 102 188 82 chr13 29695096 29695500 -72177669 - LTR7 LTR ERV1 0 450 4 1400 263 36 6 chr13 29695711 29696068 -72177101 - MER77 LTR ERV1 -2 603 236 693 264 13 63 chr13 29696160 29696399 -72176770 - MER77 LTR ERV1 -378 227 1 378 296 43 21 chr13 29696567 29696753 -72176416 - L1MC4a LINE L1 -1898 5910 5721 22 0 0 0 chr13 29699280 29699302 -72173867 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 29700497 29700526 -72172643 + AT_rich Low_complexity Low_complexity 1 29 0 210 268 0 0 chr13 29701468 29701524 -72171645 + T-rich Low_complexity Low_complexity 1 56 0 2149 118 0 10 chr13 29701909 29702223 -72170946 + AluSq SINE Alu 3 313 0 21 36 0 0 chr13 29702410 29702438 -72170731 + AT_rich Low_complexity Low_complexity 1 28 0 263 308 154 35 chr13 29702745 29702914 -72170255 + MIR SINE MIR 8 196 -66 310 250 119 54 chr13 29703447 29703615 -72169554 - LTR50 LTR ERVL -94 701 523 228 224 149 0 chr13 29703635 29703702 -72169467 - LTR50 LTR ERVL -715 80 4 1574 214 26 0 chr13 29704178 29704482 -72168687 + AluJo SINE Alu 1 312 0 752 265 126 5 chr13 29704818 29705033 -72168136 + MIR SINE MIR 12 252 -10 2259 158 53 12 chr13 29705035 29705446 -72167723 - MSTA LTR MaLR 0 428 1 301 297 29 58 chr13 29705492 29705630 -72167539 + MIR SINE MIR 58 191 -71 209 216 0 0 chr13 29706432 29706469 -72166700 + L2 LINE L2 3214 3250 -22 463 211 29 29 chr13 29706661 29706765 -72166404 + MER5A DNA MER1_type 9 112 -77 356 318 142 18 chr13 29708085 29708359 -72164810 - L2 LINE L2 0 3313 3006 487 343 60 41 chr13 29708372 29708737 -72164432 - L2 LINE L2 -454 2860 2489 216 0 0 0 chr13 29709406 29709430 -72163739 + (TA)n Simple_repeat Simple_repeat 2 25 0 195 42 0 0 chr13 29710373 29710397 -72162772 + (ATG)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 29711697 29711727 -72161442 + (TTTTTG)n Simple_repeat Simple_repeat 3 32 0 216 67 0 0 chr13 29714753 29714783 -72158386 + (TTG)n Simple_repeat Simple_repeat 2 31 0 329 102 17 0 chr13 29714855 29714914 -72158255 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 207 0 0 0 chr13 29715009 29715032 -72158137 + (GA)n Simple_repeat Simple_repeat 2 24 0 470 17 17 0 chr13 29715054 29715113 -72158056 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 481 257 103 51 chr13 29715361 29715848 -72157321 - HAL1 LINE L1 -1045 1462 951 574 345 76 20 chr13 29717223 29717617 -72155552 - L2 LINE L2 -469 2845 2430 23 0 0 0 chr13 29717643 29717666 -72155503 + AT_rich Low_complexity Low_complexity 1 23 0 594 165 12 35 chr13 29719094 29719264 -72153905 + T-rich Low_complexity Low_complexity 3 168 0 520 315 25 0 chr13 29719270 29719432 -72153737 - AluJ SINE Alu 0 302 137 232 116 0 47 chr13 29719432 29719471 -72153698 - AluJ SINE Alu -166 136 100 2670 194 46 98 chr13 29719471 29720236 -72152933 - MER50 LTR ERV1 0 734 10 623 178 0 0 chr13 29720242 29720343 -72152826 - AluJ SINE Alu -209 103 3 881 305 37 17 chr13 29720345 29720779 -72152390 - MLT1J1 LTR MaLR -2 448 8 295 323 167 5 chr13 29722994 29723186 -72149983 + MIR SINE MIR 25 247 -15 643 266 52 47 chr13 29724469 29724621 -72148548 + MIR SINE MIR 2 157 -105 3929 135 28 14 chr13 29724621 29724898 -72148271 + L1PA15 LINE L1 5505 5777 -388 2385 81 0 0 chr13 29724898 29725196 -72147973 + AluSc SINE Alu 1 298 -11 3929 135 28 14 chr13 29725196 29725570 -72147599 + L1PA15 LINE L1 5777 6165 0 643 266 52 47 chr13 29725570 29725650 -72147519 + MIR SINE MIR 157 235 -27 652 233 129 0 chr13 29725886 29726049 -72147120 - MER5A DNA MER1_type -1 188 5 391 287 226 0 chr13 29728998 29729193 -72143976 - MIR SINE MIR -22 240 2 345 154 33 0 chr13 29729716 29729807 -72143362 + (TA)n Simple_repeat Simple_repeat 2 95 0 492 333 72 13 chr13 29729809 29730046 -72143123 - MIR SINE MIR -10 252 2 486 0 0 0 chr13 29730310 29730364 -72142805 + (TA)n Simple_repeat Simple_repeat 2 55 0 2060 122 3 3 chr13 29730510 29730821 -72142348 - AluSx SINE Alu -1 311 1 184 98 0 78 chr13 29730887 29730938 -72142231 + (CCCCCT)n Simple_repeat Simple_repeat 4 50 0 3191 233 43 15 chr13 29733556 29734432 -72138737 - L1ME1 LINE L1 -5 6161 5261 34 72 0 0 chr13 29734659 29734728 -72138441 + AT_rich Low_complexity Low_complexity 1 69 0 1739 172 0 0 chr13 29735917 29736202 -72136967 + AluJb SINE Alu 6 290 -22 184 256 90 13 chr13 29737817 29737895 -72135274 - MIR SINE MIR -13 249 166 950 218 38 19 chr13 29739831 29740042 -72133127 - MER58A DNA MER1_type -1 223 9 23 0 0 0 chr13 29743004 29743027 -72130142 + AT_rich Low_complexity Low_complexity 1 23 0 1919 100 82 4 chr13 29743029 29743299 -72129870 + AluSg SINE Alu 1 291 -19 25 0 0 0 chr13 29743624 29743649 -72129520 + AT_rich Low_complexity Low_complexity 1 25 0 463 307 62 0 chr13 29743835 29744014 -72129155 - MIR SINE MIR -72 190 1 2303 175 49 9 chr13 29744170 29744615 -72128554 + MLT1C LTR MaLR 1 463 -4 2374 105 0 0 chr13 29744861 29745174 -72127995 - AluSq SINE Alu 0 313 1 309 293 50 56 chr13 29745674 29745872 -72127297 - LTR67 LTR ERVL -2 555 359 251 243 95 27 chr13 29746236 29746310 -72126859 + L2 LINE L2 3171 3249 -23 197 282 28 42 chr13 29746778 29746849 -72126320 - L2 LINE L2 0 3272 3203 198 0 0 0 chr13 29747131 29747153 -72126016 + (A)n Simple_repeat Simple_repeat 1 22 0 1391 193 51 0 chr13 29747719 29747852 -72125317 - AluJo SINE Alu -45 267 142 228 67 0 0 chr13 29747852 29747882 -72125287 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1391 193 51 0 chr13 29747882 29748002 -72125167 - AluJo SINE Alu -170 142 1 658 253 76 22 chr13 29748428 29748653 -72124516 - MER102b DNA MER1_type -12 329 93 239 234 104 13 chr13 29748671 29748748 -72124421 - MER102b DNA MER1_type -223 118 35 3252 36 0 0 chr13 29748950 29749335 -72123834 + L1PA5 LINE L1 5763 6147 -7 360 0 0 0 chr13 29749337 29749377 -72123792 + (TA)n Simple_repeat Simple_repeat 1 40 0 25 31 0 0 chr13 29749647 29749679 -72123490 + AT_rich Low_complexity Low_complexity 1 32 0 2708 170 30 48 chr13 29749847 29750411 -72122758 - MLT2B3 LTR ERVL 0 554 1 23 0 0 0 chr13 29750898 29750921 -72122248 + AT_rich Low_complexity Low_complexity 1 23 0 625 290 6 6 chr13 29751323 29751499 -72121670 - MER5B DNA MER1_type -2 176 1 195 42 0 0 chr13 29751646 29751670 -72121499 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 198 281 94 16 chr13 29752711 29752775 -72120394 - MIR3 SINE MIR -8 200 132 180 176 0 0 chr13 29752787 29752821 -72120348 - L2 LINE L2 -3 3310 3277 355 263 50 0 chr13 29753287 29753386 -72119783 - L1ME2 LINE L1 -27 6137 6034 987 221 19 5 chr13 29753393 29753601 -72119568 + MER58A DNA MER1_type 3 213 -11 1668 260 28 15 chr13 29753658 29753895 -72119274 - L1ME2 LINE L1 -230 5934 5702 1711 209 18 28 chr13 29753895 29754292 -72118877 + MSTD LTR MaLR 4 396 0 3892 128 19 3 chr13 29754301 29754894 -72118275 - LTR43 LTR ERV1 0 602 1 1668 260 28 15 chr13 29754894 29755180 -72117989 - L1ME2 LINE L1 -469 5695 5394 259 366 0 0 chr13 29755440 29755541 -72117628 - L2 LINE L2 -49 3264 3164 507 255 46 0 chr13 29756413 29756430 -72116739 - L1MA10 LINE L1 0 6334 6318 2766 227 38 39 chr13 29756430 29757456 -72115713 - L1ME1 LINE L1 -11 6155 5149 31 0 0 0 chr13 29757653 29757684 -72115485 + AT_rich Low_complexity Low_complexity 1 31 0 1897 117 26 0 chr13 29757813 29758113 -72115056 + AluSx SINE Alu 16 322 0 21 0 0 0 chr13 29758228 29758249 -72114920 + AT_rich Low_complexity Low_complexity 1 21 0 4552 87 45 43 chr13 29758600 29759290 -72113879 + LTR8 LTR ERV1 1 691 0 23 117 0 0 chr13 29760190 29760318 -72112851 + AT_rich Low_complexity Low_complexity 1 128 0 21 36 0 0 chr13 29760541 29760569 -72112600 + AT_rich Low_complexity Low_complexity 1 28 0 302 305 67 0 chr13 29760597 29760702 -72112467 - MIR3 SINE MIR -36 172 61 241 267 13 53 chr13 29760710 29760785 -72112384 - L2 LINE L2 0 3272 3201 1392 219 68 50 chr13 29761521 29761964 -72111205 - MER74B LTR ERVL -103 519 69 250 282 47 0 chr13 29762203 29762288 -72110881 + L1MC4 LINE L1 6614 6702 -1340 393 243 0 0 chr13 29762304 29762411 -72110758 + (TA)n Simple_repeat Simple_repeat 1 107 0 1463 216 32 0 chr13 29762433 29762711 -72110458 - AluJb SINE Alu -25 287 1 231 314 0 0 chr13 29763401 29763471 -72109698 - HsTC2 DNA Tc2 -1815 83 14 422 363 18 67 chr13 29763486 29763875 -72109294 - L2 LINE L2 -428 2886 2517 308 301 189 0 chr13 29765253 29765396 -72107773 - MIR SINE MIR -23 239 70 2277 95 0 7 chr13 29765408 29765702 -72107467 + AluSx SINE Alu 1 292 -20 865 338 125 14 chr13 29765898 29766743 -72106426 - L2 LINE L2 0 3313 2375 247 294 0 0 chr13 29766743 29766811 -72106358 + (TG)n Simple_repeat Simple_repeat 1 68 0 284 261 96 26 chr13 29766861 29766976 -72106193 + L2 LINE L2 3191 3313 0 472 303 53 33 chr13 29767045 29767289 -72105880 - L2 LINE L2 -1080 2234 1986 1952 95 0 8 chr13 29768212 29768464 -72104705 + AluSc SINE Alu 1 250 -59 188 298 106 19 chr13 29768468 29768572 -72104597 + MIR SINE MIR 103 215 -47 199 339 0 0 chr13 29769183 29769242 -72103927 + MIR SINE MIR 32 90 -172 24 0 0 0 chr13 29770589 29770613 -72102556 + AT_rich Low_complexity Low_complexity 1 24 0 849 215 60 78 chr13 29770822 29771204 -72101965 - MER39 LTR ERV1 -74 633 259 292 211 44 56 chr13 29771189 29771279 -72101890 - LTR48B LTR ERV1 -555 89 1 * 2231 164 30 25 chr13 29771572 29772004 -72101165 + Tigger2a DNA MER2_type 1 434 0 361 276 114 0 chr13 29772039 29772144 -72101025 - MIR SINE MIR -30 232 116 1862 80 4 15 chr13 29772215 29772478 -72100691 - L1PA6 LINE L1 0 6154 5895 324 279 176 60 chr13 29772728 29772961 -72100208 + MIR SINE MIR 2 261 -1 2498 88 131 5 chr13 29773685 29774083 -72099086 + LTR7 LTR ERV1 1 448 -2 3177 87 0 23 chr13 29774085 29774555 -72098614 + HERVH LTR ERV1 1 459 -7254 14582 101 9 19 chr13 29774609 29776827 -72096342 + HERVH LTR ERV1 793 2987 -4726 972 127 7 0 chr13 29776821 29776971 -72096198 + HERVH LTR ERV1 3140 3290 -4423 * 3462 109 0 6 chr13 29776961 29777466 -72095703 + HERVH LTR ERV1 3492 3993 -3720 2331 166 7 25 chr13 29777452 29777920 -72095249 + HERVH LTR ERV1 3954 4374 -2749 * 3528 126 2 2 chr13 29777920 29778435 -72094734 + HERVH LTR ERV1 4635 5149 -2564 1440 120 19 0 chr13 29778436 29778652 -72094517 + HERVH LTR ERV1 5600 5819 -1894 * 2267 119 48 13 chr13 29778650 29779029 -72094140 + HERVH LTR ERV1 7322 7713 0 2530 80 131 5 chr13 29779029 29779427 -72093742 + LTR7 LTR ERV1 1 448 -2 25 31 0 0 chr13 29779566 29779598 -72093571 + AT_rich Low_complexity Low_complexity 1 32 0 211 358 159 23 chr13 29780100 29780446 -72092723 - L2 LINE L2 -340 2974 2582 658 158 50 127 chr13 29780451 29780672 -72092497 + MER3 DNA MER1_type 2 205 -4 6854 139 36 19 chr13 29780828 29782026 -72091143 - Tigger3b DNA MER2_type 0 1231 14 452 286 16 0 chr13 29782181 29782307 -72090862 - MER94 DNA DNA 0 134 7 21 0 0 0 chr13 29782348 29782369 -72090800 + AT_rich Low_complexity Low_complexity 1 21 0 2149 86 31 20 chr13 29784160 29784452 -72088717 + AluSc SINE Alu 1 295 -14 198 378 102 0 chr13 29785029 29785127 -72088042 - L2 LINE L2 -248 3024 2917 2226 116 134 8 chr13 29785599 29785979 -72087190 + MSTA LTR MaLR 1 428 0 1657 147 3 45 chr13 29786295 29786607 -72086562 - AluSq SINE Alu -10 303 5 204 267 69 30 chr13 29787062 29787163 -72086006 - MIR SINE MIR -64 198 94 2066 196 20 18 chr13 29787742 29788200 -72084969 + LTR40b LTR ERVL 4 462 0 951 193 0 6 chr13 29789545 29789721 -72083448 - AluJb SINE Alu -1 311 137 295 321 106 44 chr13 29791315 29791608 -72081561 + L2 LINE L2 2483 2793 -521 228 111 0 0 chr13 29792918 29792954 -72080215 + (TC)n Simple_repeat Simple_repeat 1 36 0 346 134 15 0 chr13 29794781 29794848 -72078321 - L1MA9 LINE L1 -1 6311 6244 1545 194 0 47 chr13 29794860 29795180 -72077989 - AluJb SINE Alu -6 306 2 356 221 139 0 chr13 29796715 29796801 -72076368 - L2 LINE L2 -1 3271 3174 272 356 7 14 chr13 29797673 29797819 -72075350 + CT-rich Low_complexity Low_complexity 1 145 0 1467 172 7 36 chr13 29798035 29798338 -72074831 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr13 29799684 29799705 -72073464 + AT_rich Low_complexity Low_complexity 1 21 0 556 265 95 9 chr13 29801451 29801662 -72071507 - MIR SINE MIR -10 252 24 494 301 75 0 chr13 29801676 29801822 -72071347 + MIR SINE MIR 31 187 -75 1292 114 0 6 chr13 29801939 29802115 -72071054 - AluSg SINE Alu -135 175 1 2160 166 49 42 chr13 29802115 29802568 -72070601 + Tigger1 DNA MER2_type 6 461 -1957 948 147 7 0 chr13 29802622 29802765 -72070404 + Tigger1 DNA MER2_type 1324 1467 -951 * 11214 136 25 20 chr13 29802760 29804674 -72068495 + Tigger1 DNA MER2_type 495 2417 -1 2363 51 0 0 chr13 29804851 29805144 -72068025 + L1PA7 LINE L1 5862 6154 0 184 277 205 24 chr13 29807672 29807755 -72065414 - L2 LINE L2 -4 3268 3171 934 203 92 103 chr13 29808305 29808674 -72064495 + MLT1A1 LTR MaLR 1 365 0 657 299 68 4 chr13 29808824 29809058 -72064111 + MIR SINE MIR 14 262 0 32 43 0 0 chr13 29809320 29809366 -72063803 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr13 29809431 29809452 -72063717 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 29810077 29810110 -72063059 + AT_rich Low_complexity Low_complexity 1 33 0 390 304 154 20 chr13 29810173 29810374 -72062795 + MIR SINE MIR 35 262 0 2048 148 23 0 chr13 29811249 29811594 -72061575 + L1MA3 LINE L1 5484 5836 -469 30 0 0 0 chr13 29811760 29811790 -72061379 + AT_rich Low_complexity Low_complexity 1 30 0 294 376 85 14 chr13 29811797 29812079 -72061090 + L2 LINE L2 2190 2491 -823 4152 186 36 25 chr13 29812148 29813425 -72059744 + L1PB4 LINE L1 4402 5682 -474 5756 268 41 65 chr13 29813445 29816801 -72056368 + L1PA12 LINE L1 8 3711 -3873 894 188 0 7 chr13 29816801 29816955 -72056214 + AluSg/x SINE Alu 143 295 -15 5756 268 41 65 chr13 29816955 29817731 -72055438 + L1PA12 LINE L1 3711 4504 -3080 4836 169 5 16 chr13 29817845 29818724 -72054445 + L1PA15 LINE L1 5294 6162 -3 649 134 27 9 chr13 29818726 29818838 -72054331 + L1PB4 LINE L1 5675 5788 -368 250 238 125 0 chr13 29818852 29818932 -72054237 - L1MC4 LINE L1 -1339 6703 6614 * 263 242 27 23 chr13 29818874 29818985 -72054184 + L1MC4 LINE L1 2007 6989 -1333 2081 139 11 11 chr13 29819024 29819384 -72053785 + L1PB4 LINE L1 5785 6144 -12 440 339 16 16 chr13 29820957 29821140 -72052029 - MER5A DNA MER1_type 0 189 7 495 245 184 22 chr13 29822164 29822356 -72050813 - MIR SINE MIR -14 248 34 2395 61 0 7 chr13 29822490 29822787 -72050382 + AluY SINE Alu 1 295 -16 3603 161 111 16 chr13 29822883 29823637 -72049532 - LTR1B LTR ERV1 0 826 1 402 21 0 0 chr13 29827654 29827701 -72045468 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 266 258 15 0 chr13 29829081 29829147 -72044022 - MER94 DNA DNA -67 67 1 23 0 0 0 chr13 29830841 29830864 -72042305 + AT_rich Low_complexity Low_complexity 1 23 0 788 268 103 0 chr13 29830891 29831115 -72042054 - MIR SINE MIR -15 247 1 252 0 0 0 chr13 29831765 29831793 -72041376 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 3874 152 26 1 chr13 29831931 29832589 -72040580 + MER11B LTR ERVK 1 674 -562 348 325 98 45 chr13 29833135 29833381 -72039788 + MIR SINE MIR 3 261 -1 285 231 29 58 chr13 29834453 29834479 -72038690 + MLT1I LTR MaLR 344 369 -40 1699 220 123 57 chr13 29834479 29835253 -72037916 - LTR1B LTR ERV1 -1 825 1 285 231 29 58 chr13 29835253 29835330 -72037839 + MLT1I LTR MaLR 369 409 0 25 31 0 0 chr13 29836228 29836260 -72036909 + AT_rich Low_complexity Low_complexity 1 32 0 383 266 53 11 chr13 29837320 29837414 -72035755 + MER81 DNA DNA 17 114 0 378 0 0 0 chr13 29839444 29839486 -72033683 + (TTA)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr13 29840236 29840266 -72032903 + AT_rich Low_complexity Low_complexity 1 30 0 1010 125 74 0 chr13 29841002 29841178 -72031991 + THE1C LTR MaLR 185 373 -2 2528 143 35 38 chr13 29841180 29841826 -72031343 - L1P4 LINE L1 -435 5731 5093 27 29 0 0 chr13 29842509 29842543 -72030626 + AT_rich Low_complexity Low_complexity 1 34 0 310 151 27 14 chr13 29842842 29842915 -72030254 + GA-rich Low_complexity Low_complexity 2 75 0 217 151 38 0 chr13 29843300 29843353 -72029816 + CT-rich Low_complexity Low_complexity 2 56 0 257 246 49 0 chr13 29844680 29844741 -72028428 + MER46C DNA MER2_type 1 64 -274 795 273 23 8 chr13 29844823 29845079 -72028090 + MER46C DNA MER2_type 79 338 0 3850 129 20 61 chr13 29845839 29846545 -72026624 - L1PA13 LINE L1 -11 6152 5476 252 51 0 0 chr13 29846545 29846584 -72026585 - AluJb SINE Alu -2 306 268 1334 118 29 13 chr13 29846584 29846854 -72026315 - L1PA13 LINE L1 -678 5490 5217 545 202 8 0 chr13 29846855 29846974 -72026195 + L1P LINE L1 4256 4375 -1771 * 2078 258 24 6 chr13 29846973 29847640 -72025529 - L1P3 LINE L1 -4247 2214 1545 277 188 0 14 chr13 29847620 29847689 -72025480 - L1 LINE L1 -1087 5059 4992 * 1690 175 3 7 chr13 29847700 29847986 -72025183 - AluJb SINE Alu -27 285 1 3408 187 5 0 chr13 29847986 29848621 -72024548 - L1PA13 LINE L1 -1130 5016 4379 260 167 0 0 chr13 29848625 29848673 -72024496 - L1PA13 LINE L1 -1879 4267 4220 * 544 261 22 0 chr13 29848669 29848807 -72024362 + L1P LINE L1 1894 2034 -4112 333 300 72 60 chr13 29849941 29850191 -72022978 + Charlie8 DNA MER1_type 1 253 -2164 253 245 32 64 chr13 29850186 29850280 -72022889 + Charlie8 DNA MER1_type 2326 2416 -1 * 252 325 17 42 chr13 29852692 29852812 -72020357 - L2 LINE L2 -615 2699 2583 21 0 0 0 chr13 29854073 29854094 -72019075 + AT_rich Low_complexity Low_complexity 1 21 0 2291 102 0 0 chr13 29854159 29854462 -72018707 - AluSg SINE Alu -7 303 1 241 266 178 47 chr13 29855341 29855407 -72017762 + MIR SINE MIR 72 128 -134 2071 114 3 7 chr13 29855407 29855697 -72017472 + AluSx SINE Alu 1 289 -23 241 266 178 47 chr13 29855697 29855799 -72017370 + MIR SINE MIR 128 262 0 25 65 0 0 chr13 29855817 29855863 -72017306 + AT_rich Low_complexity Low_complexity 1 46 0 257 282 99 7 chr13 29856521 29856663 -72016506 + L1MC4a LINE L1 5760 5914 -1894 242 260 202 55 chr13 29856679 29856971 -72016198 + L1MC4a LINE L1 5844 6178 -1630 332 339 109 72 chr13 29857340 29857955 -72015214 + L2 LINE L2 2261 2940 -373 2895 116 5 2 chr13 29857955 29858387 -72014782 - L1PB2 LINE L1 -10 6141 5709 332 339 109 72 chr13 29858387 29858726 -72014443 + L2 LINE L2 2940 3265 -48 2285 101 0 3 chr13 29858925 29859223 -72013946 + AluSg SINE Alu 1 297 -13 42 57 0 0 chr13 29859233 29859303 -72013866 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 29859316 29859337 -72013832 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 29859827 29859849 -72013320 + AT_rich Low_complexity Low_complexity 1 22 0 2184 149 48 26 chr13 29859959 29860376 -72012793 - MSTA LTR MaLR 0 428 3 1066 218 44 98 chr13 29860476 29860862 -72012307 + MLT1A1 LTR MaLR 1 365 0 2362 199 12 91 chr13 29860870 29861519 -72011650 + MLT1A1-int LTR MaLR 9 606 -1129 1408 192 7 38 chr13 29861519 29861834 -72011335 + AluJo SINE Alu 1 306 0 2876 179 17 13 chr13 29861937 29862539 -72010630 - L1PBb LINE L1 -5124 1739 1134 3663 92 18 25 chr13 29862539 29863279 -72009890 + MER11A LTR ERVK 1 798 -438 5332 247 22 17 chr13 29863280 29865342 -72007827 - L1PBa LINE L1 -5219 1644 3 3388 181 20 6 chr13 29865356 29866054 -72007115 - L1 LINE L1 -1347 4799 4092 1879 177 105 5 chr13 29866054 29866443 -72006726 + MSTA LTR MaLR 1 428 0 1080 118 18 6 chr13 29866445 29866614 -72006555 + MSTA-int LTR MaLR 3 173 -1407 4109 267 30 16 chr13 29866617 29868181 -72004988 - L1M1 LINE L1 -5278 2287 16 544 274 13 0 chr13 29868206 29868359 -72004810 + L1ME1 LINE L1 3503 3657 -2489 376 202 0 0 chr13 29868424 29868501 -72004668 + MLT1E2 LTR MaLR 86 208 -446 366 232 56 14 chr13 29868501 29868643 -72004526 + L1M4 LINE L1 5033 5180 -966 990 271 81 11 chr13 29868743 29869095 -72004074 + MLT1E2 LTR MaLR 208 622 -4 537 204 92 47 chr13 29869102 29869220 -72003949 + L1ME1 LINE L1 3656 3767 -2379 2184 140 27 30 chr13 29869220 29869585 -72003584 - THE1B LTR MaLR 0 364 1 11360 103 9 0 chr13 29869585 29871151 -72002018 - THE1B-int LTR MaLR 0 1580 1 2243 135 28 25 chr13 29871151 29871514 -72001655 - THE1B LTR MaLR 0 364 1 537 204 92 47 chr13 29871514 29871568 -72001601 + L1ME1 LINE L1 3766 3838 -2308 * 545 254 109 12 chr13 29871561 29871817 -72001352 + L1ME1 LINE L1 4349 4629 -1517 2240 152 5 12 chr13 29871837 29872251 -72000918 - L1MA5 LINE L1 -6 6294 5884 5029 179 23 21 chr13 29872254 29873476 -71999693 + L1M2 LINE L1 4194 5436 -864 2257 140 91 5 chr13 29873476 29873870 -71999299 + MSTA LTR MaLR 1 428 0 5029 179 23 21 chr13 29873870 29874223 -71998946 + L1M2 LINE L1 5436 5787 -513 930 256 0 0 chr13 29874331 29874526 -71998643 - MER58A DNA MER1_type -24 200 6 1332 241 58 0 chr13 29874531 29874930 -71998239 + L1ME1 LINE L1 4759 5180 -966 490 219 22 17 chr13 29874936 29875114 -71998055 + GA-rich Low_complexity Low_complexity 1 179 0 257 103 0 59 chr13 29875248 29875316 -71997853 + (GGGAA)n Simple_repeat Simple_repeat 5 68 0 791 263 75 3 chr13 29875316 29875664 -71997505 + L1ME1 LINE L1 5187 5559 -605 1068 217 15 120 chr13 29875673 29875962 -71997207 - MLT1A1 LTR MaLR -2 363 124 1229 231 102 14 chr13 29875962 29876326 -71996843 + MSTD LTR MaLR 1 396 0 1068 217 15 120 chr13 29876326 29876428 -71996741 - MLT1A1 LTR MaLR -241 124 13 1252 261 71 55 chr13 29876439 29877034 -71996135 + L1ME1 LINE L1 5558 6161 -5 1214 216 60 0 chr13 29877068 29877415 -71995754 + Looper DNA T2_type 1 368 -1190 400 329 85 41 chr13 29877417 29877828 -71995341 + L2 LINE L2 2280 2708 -606 617 100 0 5 chr13 29877835 29878021 -71995148 + AluSq SINE Alu 1 283 -30 596 97 11 0 chr13 29878021 29878114 -71995055 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 266 343 126 8 chr13 29878118 29878426 -71994743 + L2 LINE L2 2716 3066 -206 1213 184 5 167 chr13 29881809 29882439 -71990730 - L1M3 LINE L1 -495 5688 5159 2236 189 11 11 chr13 29882487 29882957 -71990212 + L1MB1 LINE L1 5698 6167 -1 300 91 0 0 chr13 29884481 29884525 -71988644 + (TG)n Simple_repeat Simple_repeat 2 45 0 2347 94 0 0 chr13 29884894 29885193 -71987976 + AluSx SINE Alu 1 299 -13 1157 251 48 20 chr13 29885237 29885595 -71987574 - L1MC4a LINE L1 -6 7802 7435 976 224 33 24 chr13 29885599 29885930 -71987239 + L1MB8 LINE L1 4230 4563 -1583 1291 261 57 20 chr13 29885968 29886374 -71986795 - MLT1D LTR MaLR -84 421 1 1527 207 20 43 chr13 29886374 29886482 -71986687 + L1MB8 LINE L1 4551 4660 -1486 2883 3 0 0 chr13 29886482 29886793 -71986376 + AluYa5 SINE Alu 1 311 0 1527 207 20 43 chr13 29886793 29887075 -71986094 + L1MB8 LINE L1 4660 4932 -1214 2067 225 67 13 chr13 29887081 29887738 -71985431 + L1MB8 LINE L1 5293 6008 -181 446 211 9 0 chr13 29887744 29887853 -71985316 + L1MB8 LINE L1 6068 6177 -1 230 231 43 0 chr13 29889445 29889562 -71983607 + (TA)n Simple_repeat Simple_repeat 2 123 0 546 331 72 31 chr13 29889825 29890184 -71982985 + MLT1J LTR MaLR 28 401 -110 366 260 19 19 chr13 29890284 29890388 -71982781 + MIR SINE MIR 159 262 0 304 315 105 21 chr13 29890667 29890810 -71982359 + MIR SINE MIR 6 160 -102 265 265 33 86 chr13 29890866 29891017 -71982152 + MLT1L LTR MaLR 86 228 -387 205 333 163 0 chr13 29892584 29892731 -71980438 + MIR SINE MIR 48 218 -44 340 321 59 16 chr13 29892794 29892981 -71980188 - MLT1J1 LTR MaLR 0 446 252 268 222 63 0 chr13 29893116 29893179 -71979990 - MLT1J2 LTR MaLR -382 68 2 1970 158 33 25 chr13 29893370 29893731 -71979438 + THE1B LTR MaLR 1 364 0 246 136 0 0 chr13 29893931 29893975 -71979194 + (TC)n Simple_repeat Simple_repeat 1 44 0 323 78 20 0 chr13 29894458 29894509 -71978660 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 226 176 44 54 chr13 29894553 29894658 -71978511 - MLT1J1 LTR MaLR -5 445 343 1355 146 105 70 chr13 29894768 29895156 -71978013 - MER67C LTR ERV1 -246 268 2 2033 156 33 0 chr13 29895349 29895683 -71977486 - L1PA15 LINE L1 0 6165 5821 249 246 31 0 chr13 29895688 29895753 -71977416 - MLT1J2 LTR MaLR -317 133 67 540 321 78 44 chr13 29896024 29896385 -71976784 - LTR67 LTR ERVL -26 531 159 22 0 0 0 chr13 29896509 29896531 -71976638 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 29896659 29896697 -71976472 + AT_rich Low_complexity Low_complexity 1 38 0 271 366 10 20 chr13 29897473 29897574 -71975595 - MIR SINE MIR -83 125 26 977 79 0 22 chr13 29898579 29898718 -71974451 + AluY SINE Alu 169 304 -7 349 277 135 0 chr13 29900406 29900554 -71972615 + MER46C DNA MER2_type 1 168 -170 223 331 24 48 chr13 29902460 29902584 -71970585 - MER5A DNA MER1_type -1 188 68 27 0 0 0 chr13 29902836 29902863 -71970306 + AT_rich Low_complexity Low_complexity 1 27 0 237 132 0 0 chr13 29902982 29903020 -71970149 + (T)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr13 29904773 29904795 -71968374 + AT_rich Low_complexity Low_complexity 1 22 0 847 219 81 0 chr13 29904804 29905050 -71968119 - L1MD3 LINE L1 0 7995 7730 1064 262 58 62 chr13 29906289 29906804 -71966365 - LTR40a LTR ERVL -2 517 5 427 245 87 16 chr13 29907218 29907402 -71965767 - L1MC5 LINE L1 -36 7925 7729 21 0 0 0 chr13 29908184 29908205 -71964964 + AT_rich Low_complexity Low_complexity 1 21 0 489 194 11 0 chr13 29908770 29908863 -71964306 + AluJo SINE Alu 127 220 -92 5585 109 57 6 chr13 29908919 29909937 -71963232 + L1PA14 LINE L1 5099 6161 0 2276 95 0 0 chr13 29910130 29910426 -71962743 + AluSq SINE Alu 1 296 -17 218 305 17 0 chr13 29910584 29910643 -71962526 - L2 LINE L2 0 3272 3213 * 226 231 0 0 chr13 29910610 29910649 -71962520 - MIR SINE MIR -21 241 203 4073 191 41 0 chr13 29911207 29911566 -71961603 - L1 LINE L1 -1363 4783 4440 189 0 0 0 chr13 29911566 29911587 -71961582 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 4073 191 41 0 chr13 29911587 29912084 -71961085 - L1 LINE L1 -1706 4440 3892 * 5604 112 24 35 chr13 29912080 29912785 -71960384 + L1PB1 LINE L1 5090 5779 -372 348 24 0 0 chr13 29912785 29912826 -71960343 + (CA)n Simple_repeat Simple_repeat 2 42 0 5604 112 24 35 chr13 29912826 29913194 -71959975 + L1PB1 LINE L1 5779 6150 -1 24 0 0 0 chr13 29913251 29913275 -71959894 + AT_rich Low_complexity Low_complexity 1 24 0 423 287 98 16 chr13 29913458 29913702 -71959467 + L1ME4a LINE L1 2232 2495 -3651 1198 158 0 36 chr13 29913707 29913954 -71959215 + L1MA9 LINE L1 6075 6312 0 648 302 99 23 chr13 29914166 29914722 -71958447 + L1ME4a LINE L1 5402 5999 -122 235 289 13 0 chr13 29914902 29914978 -71958191 + MER52A LTR ERV1 1 77 -1678 3324 197 15 20 chr13 29915212 29915862 -71957307 + MER52A LTR ERV1 1074 1720 -35 386 253 133 24 chr13 29915899 29916065 -71957104 - L2 LINE L2 -129 3184 3001 1767 127 0 4 chr13 29916802 29917069 -71956100 + L1M1 LINE L1 5514 5779 -524 279 341 0 0 chr13 29917310 29917398 -71955771 + L3 LINE CR1 1484 1571 -6 832 258 43 36 chr13 29917880 29918209 -71954960 - HAL1 LINE L1 0 2507 2177 277 286 141 30 chr13 29918378 29918640 -71954529 - HAL1 LINE L1 -2135 372 82 248 281 112 0 chr13 29918945 29919034 -71954135 - MIR SINE MIR 0 262 164 599 278 26 26 chr13 29919470 29919661 -71953508 + MIR SINE MIR 51 241 -21 235 323 47 39 chr13 29919672 29919799 -71953370 - MIR SINE MIR -68 194 67 22 43 0 21 chr13 29919995 29920023 -71953146 + AT_rich Low_complexity Low_complexity 1 29 -17 2401 154 12 44 chr13 29920023 29920504 -71952665 + L1MB1 LINE L1 5702 6167 -1 22 43 0 21 chr13 29920504 29920522 -71952647 + AT_rich Low_complexity Low_complexity 29 46 0 236 345 0 12 chr13 29924686 29924770 -71948399 + L2 LINE L2 3227 3309 -4 210 205 0 0 chr13 29926300 29926339 -71946830 + L2 LINE L2 3221 3259 -13 246 62 0 0 chr13 29926340 29926372 -71946797 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 233 276 24 0 chr13 29927179 29927302 -71945867 + (TA)n Simple_repeat Simple_repeat 2 127 0 257 0 30 0 chr13 29929396 29929429 -71943740 + (TC)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr13 29929428 29929449 -71943720 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 261 319 132 56 chr13 29930483 29930771 -71942398 + L2 LINE L2 2037 2346 -968 24 77 0 0 chr13 29931782 29931834 -71941335 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr13 29932293 29932315 -71940854 + AT_rich Low_complexity Low_complexity 1 22 0 257 316 32 11 chr13 29932461 29932556 -71940613 + MIR3 SINE MIR 112 208 0 184 354 111 0 chr13 29933490 29933589 -71939580 - L2 LINE L2 -822 2492 2383 1572 249 75 36 chr13 29933719 29934241 -71938928 + MLT1F LTR MaLR 1 542 0 1769 166 11 0 chr13 29934260 29934543 -71938626 + AluSx SINE Alu 1 286 -26 446 61 15 0 chr13 29934546 29934612 -71938557 + (CATA)n Simple_repeat Simple_repeat 2 68 0 258 323 169 36 chr13 29934699 29934947 -71938222 - L2 LINE L2 -1182 2132 1852 1585 145 26 36 chr13 29935429 29935732 -71937437 + AluJb SINE Alu 11 310 -2 264 326 70 0 chr13 29935927 29936013 -71937156 - L2 LINE L2 -4 3268 3177 3280 115 10 4 chr13 29936232 29936736 -71936433 - L1PA11 LINE L1 0 6174 5668 25 21 0 43 chr13 29937016 29937038 -71936131 + AT_rich Low_complexity Low_complexity 1 22 -23 8545 39 5 0 chr13 29937038 29938861 -71934308 - L1PA5 LINE L1 0 6154 4325 25 21 0 43 chr13 29938861 29938885 -71934284 + AT_rich Low_complexity Low_complexity 22 45 0 5504 160 15 16 chr13 29940295 29941329 -71931840 - L1MA7 LINE L1 0 6291 5259 28 71 0 0 chr13 29941338 29941394 -71931775 + AT_rich Low_complexity Low_complexity 1 56 0 2041 204 41 7 chr13 29943132 29943543 -71929626 - MSTB LTR MaLR 0 426 2 5248 158 52 9 chr13 29946372 29947526 -71925643 + L1MA7 LINE L1 5089 6291 0 22 35 0 0 chr13 29947526 29947555 -71925614 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 29947688 29947718 -71925451 + AT_rich Low_complexity Low_complexity 1 30 0 304 287 24 37 chr13 29948009 29948173 -71924996 + L1M4 LINE L1 2113 2274 -3872 24 0 0 0 chr13 29949588 29949612 -71923557 + AT_rich Low_complexity Low_complexity 1 24 0 312 331 86 13 chr13 29949705 29950555 -71922614 - L1ME LINE L1 -498 5672 4743 377 263 67 51 chr13 29950767 29951020 -71922149 - L1ME LINE L1 -2214 3932 3671 2555 232 158 105 chr13 29951059 29951253 -71921916 - L1ME LINE L1 -707 5393 5211 189 0 0 0 chr13 29951253 29951274 -71921895 + (TC)n Simple_repeat Simple_repeat 2 22 0 2555 232 158 105 chr13 29951274 29952455 -71920714 - L1ME LINE L1 -889 5211 4094 1212 208 41 4 chr13 29952455 29952700 -71920469 - MLT2B2 LTR ERVL -261 254 1 2555 232 158 105 chr13 29952700 29953958 -71919211 - L1ME LINE L1 -2006 4094 2364 284 294 48 73 chr13 29953982 29954230 -71918939 - L1ME LINE L1 -3951 2310 2069 238 317 134 31 chr13 29954301 29954525 -71918644 - L1ME LINE L1 -5286 696 450 245 349 65 24 chr13 29954982 29955151 -71918018 - L1ME LINE L1 -5636 434 259 23 0 0 0 chr13 29955268 29955291 -71917878 + AT_rich Low_complexity Low_complexity 1 23 0 1716 309 24 17 chr13 29957991 29958149 -71915020 + MLT1H1 LTR MaLR 1 156 -399 3815 107 0 11 chr13 29958149 29958712 -71914457 + L1PA13 LINE L1 5607 6163 0 1716 309 24 17 chr13 29958712 29959096 -71914073 + MLT1H1 LTR MaLR 156 547 -8 324 343 0 57 chr13 29960068 29960208 -71912961 + MIR SINE MIR 20 151 -111 264 329 21 35 chr13 29960837 29960980 -71912189 - MIR SINE MIR 0 262 122 260 256 56 33 chr13 29961471 29961561 -71911608 + MLT1L LTR MaLR 179 270 -345 235 301 0 0 chr13 29961710 29961783 -71911386 + MLT1K LTR MaLR 466 538 -50 907 215 37 23 chr13 29961810 29962024 -71911145 - MER20 DNA MER1_type -1 218 2 574 224 75 0 chr13 29962609 29962743 -71910426 + MER3 DNA MER1_type 7 150 -59 318 224 50 93 chr13 29963122 29963283 -71909886 + MER51A LTR ERV1 438 591 -49 21 71 0 0 chr13 29966381 29966423 -71906746 + AT_rich Low_complexity Low_complexity 1 42 0 712 248 64 5 chr13 29967167 29967369 -71905800 + MIR SINE MIR 31 244 -18 559 184 119 0 chr13 29967899 29968008 -71905161 + FLAM_A SINE Alu 1 122 -11 2526 68 0 0 chr13 29968098 29968405 -71904764 + AluY SINE Alu 1 307 -4 953 184 6 0 chr13 29968408 29968571 -71904598 + AluJb SINE Alu 137 300 -12 980 226 69 85 chr13 29968792 29969168 -71904001 + MLT1A2 LTR MaLR 1 370 -4 944 218 24 10 chr13 29969215 29969421 -71903748 - MER6B DNA MER2_type -1 209 1 24 0 0 0 chr13 29969641 29969665 -71903504 + AT_rich Low_complexity Low_complexity 1 24 0 205 139 23 151 chr13 29969722 29969808 -71903361 + L2 LINE L2 1317 1391 -1923 256 272 43 33 chr13 29969894 29969986 -71903183 - LTR33A LTR ERVL -20 503 411 342 282 100 0 chr13 29970022 29970132 -71903037 - LTR50 LTR ERVL -190 605 485 578 320 53 5 chr13 29970236 29970442 -71902727 - LTR50 LTR ERVL -575 220 5 1450 337 113 31 chr13 29970455 29971655 -71901514 + L2 LINE L2 1610 2907 -407 27 62 0 0 chr13 29971732 29971780 -71901389 + AT_rich Low_complexity Low_complexity 1 48 0 778 189 104 15 chr13 29971994 29972195 -71900974 - MER20 DNA MER1_type 0 219 1 447 266 90 43 chr13 29972272 29972460 -71900709 - L2 LINE L2 0 3313 3117 1599 201 69 6 chr13 29973693 29974056 -71899113 + MLT1B LTR MaLR 2 387 -3 567 310 102 28 chr13 29975637 29976001 -71897168 + MLT1J1 LTR MaLR 15 405 -41 1320 283 103 9 chr13 29976283 29976856 -71896313 - Charlie7 DNA MER1_type -1923 689 63 1605 189 16 22 chr13 29976956 29977269 -71895900 + AluJb SINE Alu 2 312 0 1963 88 38 69 chr13 29978137 29978456 -71894713 + AluSc SINE Alu 1 309 0 226 301 14 14 chr13 29978680 29978753 -71894416 + L2 LINE L2 2605 2677 -637 428 298 0 8 chr13 29978761 29978885 -71894284 + FLAM_C SINE Alu 1 123 -20 924 301 23 4 chr13 29978899 29979257 -71893912 + L2 LINE L2 2695 3057 -256 1548 280 61 45 chr13 29980607 29980778 -71892391 + L2 LINE L2 1519 1686 -1628 2300 226 44 18 chr13 29980778 29981397 -71891772 + LTR27 LTR ERV1 2 636 0 1548 280 61 45 chr13 29981397 29981928 -71891241 + L2 LINE L2 1686 2232 -1082 1032 257 9 0 chr13 29982214 29982432 -71890737 - MER58A DNA MER1_type -3 221 2 330 181 0 42 chr13 29982432 29982502 -71890667 + MLT1I LTR MaLR 341 407 -2 282 268 138 29 chr13 29984330 29984468 -71888701 - MIR SINE MIR -34 228 76 1604 174 19 32 chr13 29984805 29985121 -71888048 - AluJo SINE Alu 0 312 1 21 36 0 0 chr13 29985697 29985725 -71887444 + AT_rich Low_complexity Low_complexity 1 28 0 187 330 62 45 chr13 29985860 29985972 -71887197 - L2 LINE L2 -8 3264 3151 180 269 161 54 chr13 29986558 29986651 -71886518 + MIR SINE MIR 40 142 -66 184 162 54 0 chr13 29988750 29988787 -71884382 + L3b LINE CR1 1303 1341 -242 1602 189 113 6 chr13 29989147 29989502 -71883667 - MSTD LTR MaLR 0 396 4 2001 122 20 7 chr13 29989778 29990072 -71883097 - AluSx SINE Alu -14 298 1 288 0 0 0 chr13 29991513 29991545 -71881624 + (T)n Simple_repeat Simple_repeat 1 32 0 258 311 58 19 chr13 29992278 29992381 -71880788 - MIR SINE MIR -142 120 14 1177 77 6 12 chr13 29992691 29992859 -71880310 + L1PA10 LINE L1 6002 6168 0 2136 113 20 0 chr13 29992990 29993291 -71879878 - AluSp SINE Alu -6 307 1 21 0 0 0 chr13 29994830 29994851 -71878318 + AT_rich Low_complexity Low_complexity 1 21 0 579 243 58 86 chr13 29995262 29995505 -71877664 + MER8 DNA MER2_type 3 238 -1 1661 251 108 37 chr13 29995549 29996122 -71877047 + MLT1E3 LTR MaLR 8 621 -3 283 291 97 49 chr13 29996153 29996400 -71876769 + MLT1L LTR MaLR 353 611 -4 253 284 90 62 chr13 29996600 29997035 -71876134 + L1ME2 LINE L1 1290 1736 -4834 1558 252 103 26 chr13 29997140 29997857 -71875312 - L1 LINE L1 -2840 3306 2535 243 61 0 0 chr13 29997867 29997900 -71875269 + (TATTG)n Simple_repeat Simple_repeat 3 35 0 4348 214 24 27 chr13 29998006 29999334 -71873835 + L1MA9 LINE L1 3289 4619 -1693 195 42 0 0 chr13 29999334 29999358 -71873811 + (TG)n Simple_repeat Simple_repeat 2 25 0 4348 214 24 27 chr13 29999358 29999853 -71873316 + L1MA9 LINE L1 4619 6270 -42 1456 250 73 30 chr13 29999853 30000426 -71872743 + L1MB8 LINE L1 5568 6165 -13 493 280 32 11 chr13 30000429 30000618 -71872551 + L1ME2 LINE L1 2052 2244 -4581 394 249 88 10 chr13 30000810 30001071 -71872098 + L1ME2 LINE L1 2482 2721 -3925 920 133 53 7 chr13 30001103 30001254 -71871915 - Tigger2 DNA MER2_type -288 2430 2273 264 200 62 0 chr13 30001244 30001309 -71871860 - Tigger2 DNA MER2_type -2649 69 1 * 942 270 50 38 chr13 30001372 30001768 -71871401 + L1ME2 LINE L1 2813 3213 -3431 858 252 71 53 chr13 30001794 30002157 -71871012 - MLT1A2 LTR MaLR 0 374 1 514 279 42 5 chr13 30002157 30002372 -71870797 + L1ME2 LINE L1 3233 3455 -3189 243 228 0 18 chr13 30002832 30002889 -71870280 + (TA)n Simple_repeat Simple_repeat 1 56 0 1485 272 153 22 chr13 30002895 30003704 -71869465 + L1ME2 LINE L1 5742 6657 -5 382 143 0 0 chr13 30006563 30006619 -71866550 + L1PA8A LINE L1 6069 6124 -7 1208 157 14 5 chr13 30006694 30006904 -71866265 + AluSg/x SINE Alu 77 288 -24 2035 246 47 27 chr13 30006915 30007552 -71865617 - L1ME1 LINE L1 -23 6212 5563 316 249 56 67 chr13 30007633 30007902 -71865267 - L1ME1 LINE L1 -2751 3464 3199 * 387 236 187 0 chr13 30007891 30008104 -71865065 - L1ME1 LINE L1 -3735 2480 2230 483 232 76 27 chr13 30008108 30008293 -71864876 - L1ME1 LINE L1 -4203 2193 2000 334 200 40 60 chr13 30008819 30008919 -71864250 - MIR SINE MIR -7 255 158 1892 125 3 7 chr13 30010161 30010448 -71862721 + AluSx SINE Alu 1 286 -26 22 35 0 0 chr13 30010589 30010618 -71862551 + AT_rich Low_complexity Low_complexity 1 29 0 765 236 91 5 chr13 30011835 30012034 -71861135 + MER20 DNA MER1_type 3 218 -1 268 350 106 50 chr13 30012407 30012830 -71860339 - L2 LINE L2 -657 2657 2211 24 0 0 0 chr13 30013109 30013133 -71860036 + AT_rich Low_complexity Low_complexity 1 24 0 257 271 93 25 chr13 30015587 30015705 -71857464 - MER94 DNA DNA -1 133 8 348 24 0 0 chr13 30016399 30016440 -71856729 + (TGG)n Simple_repeat Simple_repeat 3 43 0 314 328 30 0 chr13 30019743 30019874 -71853295 + L2 LINE L2 2517 2651 -663 202 318 202 43 chr13 30019959 30020217 -71852952 + L2 LINE L2 1731 2029 -1285 451 278 69 6 chr13 30020260 30020433 -71852736 - LTR33 LTR ERVL -5 516 333 375 331 0 0 chr13 30020616 30020737 -71852432 - LTR33 LTR ERVL -400 121 1 226 341 123 31 chr13 30020738 30021087 -71852082 + L2 LINE L2 2103 2483 -831 232 360 70 25 chr13 30021230 30021430 -71851739 - L2 LINE L2 -190 3082 2874 188 323 71 30 chr13 30022027 30022126 -71851043 + MIR3 SINE MIR 91 193 -15 2260 98 0 0 chr13 30023140 30023436 -71849733 + AluSg SINE Alu 1 296 -14 21 57 0 0 chr13 30024516 30024551 -71848618 + AT_rich Low_complexity Low_complexity 1 35 0 201 211 0 0 chr13 30024779 30024831 -71848338 + (TA)n Simple_repeat Simple_repeat 1 52 0 206 247 14 55 chr13 30026094 30026167 -71847002 + MIR SINE MIR 167 236 -26 200 348 71 9 chr13 30030375 30030487 -71842682 + MIR SINE MIR 2 120 -142 447 190 35 60 chr13 30031197 30031313 -71841856 - L2 LINE L2 -5 3308 3196 296 285 45 84 chr13 30033360 30033539 -71839630 + L2 LINE L2 2597 2768 -546 2089 119 32 40 chr13 30033664 30034042 -71839127 + THE1C LTR MaLR 1 375 0 548 313 88 9 chr13 30034895 30035122 -71838047 + MIR SINE MIR 2 246 -16 2239 94 3 7 chr13 30036790 30037088 -71836081 - AluSx SINE Alu -2 310 14 675 279 89 49 chr13 30037130 30037688 -71835481 + MLT1G1 LTR MaLR 1 549 0 22 35 0 0 chr13 30037825 30037854 -71835315 + AT_rich Low_complexity Low_complexity 1 29 0 558 274 97 21 chr13 30039280 30039466 -71833703 + MIR SINE MIR 61 260 -2 423 277 45 68 chr13 30039567 30039617 -71833552 - MIR SINE MIR -46 216 166 2399 125 5 14 chr13 30039617 30039984 -71833185 + THE1B LTR MaLR 1 364 0 423 277 45 68 chr13 30039984 30040153 -71833016 - MIR SINE MIR -96 166 2 216 298 85 78 chr13 30041538 30041796 -71831373 + L2 LINE L2 2397 2656 -658 399 309 113 40 chr13 30041914 30042049 -71831120 + L2 LINE L2 2933 3057 -256 1818 168 45 6 chr13 30042049 30042383 -71830786 - MER7A DNA MER2_type -1 345 1 399 309 113 40 chr13 30042383 30042600 -71830569 + L2 LINE L2 3057 3311 -2 304 259 197 20 chr13 30043335 30043482 -71829687 + MIR SINE MIR 58 230 -32 311 265 77 17 chr13 30043499 30043616 -71829553 + MIR3 SINE MIR 54 177 -31 231 353 43 9 chr13 30045412 30045528 -71827641 + 5S rRNA rRNA 1 120 -1 348 301 151 24 chr13 30045547 30045713 -71827456 + MIR SINE MIR 12 198 -64 3944 181 49 24 chr13 30045714 30046614 -71826555 + L1MA9 LINE L1 5391 6312 0 231 99 49 25 chr13 30046618 30046699 -71826470 + (TA)n Simple_repeat Simple_repeat 1 83 0 294 214 214 10 chr13 30046837 30046935 -71826234 - L2 LINE L2 -4 3309 3192 21 57 0 0 chr13 30047770 30047805 -71825364 + AT_rich Low_complexity Low_complexity 1 35 0 493 114 53 92 chr13 30049533 30049664 -71823505 + L1MA4 LINE L1 6174 6299 -1 968 228 105 46 chr13 30049747 30050071 -71823098 - MER2 DNA MER2_type -2 343 1 361 343 123 9 chr13 30050093 30050312 -71822857 + L3 LINE CR1 1288 1531 -46 2302 96 0 34 chr13 30050383 30050706 -71822463 - AluSx SINE Alu 0 312 1 2585 124 41 2 chr13 30051425 30051837 -71821332 + MSTA LTR MaLR 1 428 0 246 62 0 0 chr13 30055170 30055202 -71817967 + (CA)n Simple_repeat Simple_repeat 2 33 0 1344 154 9 0 chr13 30056193 30056407 -71816762 - L1PB4 LINE L1 -1 6155 5940 214 337 66 22 chr13 30056709 30056890 -71816279 + L2 LINE L2 2450 2638 -676 202 364 173 0 chr13 30057348 30057458 -71815711 + L2 LINE L2 3141 3269 -3 266 324 14 0 chr13 30057487 30057561 -71815608 - MIR SINE MIR -115 93 19 2388 150 104 17 chr13 30108038 30108164 -71765005 + MER6 DNA MER2_type 330 444 -421 2116 138 33 25 chr13 30108164 30108525 -71764644 + THE1B LTR MaLR 1 364 0 2388 150 104 17 chr13 30108525 30108879 -71764290 + MER6 DNA MER2_type 444 852 -13 928 245 0 11 chr13 30111117 30111305 -71761864 + MER5A DNA MER1_type 1 186 -3 454 322 33 16 chr13 30111640 30111823 -71761346 + MIR SINE MIR 16 201 -61 765 209 28 0 chr13 30111827 30112009 -71761160 - MER53 DNA DNA 0 189 3 26 0 0 0 chr13 30112080 30112106 -71761063 + AT_rich Low_complexity Low_complexity 1 26 0 697 253 25 8 chr13 30113814 30114122 -71759047 - L1M4c LINE L1 -3814 2918 2608 1728 168 3 13 chr13 30114251 30114549 -71758620 + AluSx SINE Alu 1 295 -17 363 246 56 28 chr13 30114899 30115078 -71758091 - L1M4c LINE L1 -4116 2618 2435 1332 128 55 206 chr13 30115144 30115647 -71757522 + Tigger2a DNA MER2_type 1 409 -25 3453 256 54 39 chr13 30115776 30117177 -71755992 - L1M4c LINE L1 -4516 2137 1167 254 284 74 0 chr13 30117298 30117379 -71755790 + MIR SINE MIR 62 148 -114 965 161 0 7 chr13 30117783 30117938 -71755231 - AluSg SINE Alu -154 156 3 249 324 98 0 chr13 30118540 30118642 -71754527 + MIR SINE MIR 151 262 0 180 0 0 0 chr13 30121412 30121432 -71751737 + (CAA)n Simple_repeat Simple_repeat 2 21 0 635 261 6 19 chr13 30121432 30121578 -71751591 - FRAM SINE Alu -156 146 1 24 0 0 0 chr13 30122120 30122144 -71751025 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 30123109 30123133 -71750036 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr13 30123444 30123486 -71749683 + AT_rich Low_complexity Low_complexity 1 42 0 1309 203 185 10 chr13 30124573 30124962 -71748207 - MSTB2 LTR MaLR 0 457 1 27 49 0 0 chr13 30126217 30126258 -71746911 + AT_rich Low_complexity Low_complexity 1 41 0 214 306 12 24 chr13 30126518 30126603 -71746566 + MIR3 SINE MIR 82 165 -43 248 253 13 0 chr13 30126636 30126715 -71746454 + (TA)n Simple_repeat Simple_repeat 2 81 0 695 264 62 0 chr13 30126902 30127080 -71746089 - MER5A DNA MER1_type 0 189 1 394 236 173 17 chr13 30127088 30127252 -71745917 - MER5A DNA MER1_type -1 177 1 1139 134 50 34 chr13 30127304 30127543 -71745626 + L1MA9 LINE L1 6070 6312 0 233 241 149 0 chr13 30130745 30130832 -71742337 - MIR SINE MIR -73 189 90 291 282 68 19 chr13 30132138 30132241 -71740928 + MIR SINE MIR 76 183 -79 226 244 96 67 chr13 30132450 30132585 -71740584 + L1ME4a LINE L1 5977 6115 -6 278 273 81 20 chr13 30132698 30132797 -71740372 - L2 LINE L2 0 3313 3209 182 168 122 84 chr13 30132837 30132944 -71740225 - MER5C DNA MER1_type -204 120 10 1150 250 151 33 chr13 30134354 30134923 -71738246 - L1ME3A LINE L1 -9 6397 5762 589 152 51 14 chr13 30134923 30135061 -71738108 - LTR37A LTR ERV1 -2 424 282 319 189 147 32 chr13 30135158 30135253 -71737916 - LTR37A LTR ERV1 -320 106 1 480 257 101 27 chr13 30135253 30135510 -71737659 - L1ME3A LINE L1 -641 5765 5490 350 322 42 72 chr13 30135645 30135977 -71737192 - L1ME3A LINE L1 -4781 1603 1282 542 253 96 9 chr13 30135981 30136210 -71736959 - L1ME3A LINE L1 -4975 1397 1149 2143 193 29 2 chr13 30136298 30136749 -71736420 - L1MB2 LINE L1 -1 6234 5772 1140 178 62 36 chr13 30136753 30137029 -71736140 + THE1C LTR MaLR 1 283 -92 623 241 54 25 chr13 30137899 30138102 -71735067 + MIR SINE MIR 44 252 -10 268 335 43 43 chr13 30138789 30138974 -71734195 - MIR3 SINE MIR -11 197 13 195 311 0 0 chr13 30139176 30139221 -71733948 - MIR SINE MIR -135 73 29 274 288 77 17 chr13 30139294 30139424 -71733745 - MLT1J1 LTR MaLR -37 413 278 397 320 87 12 chr13 30139448 30139620 -71733549 - MLT1J2 LTR MaLR -245 205 21 2112 107 7 13 chr13 30139836 30140145 -71733024 + AluSx SINE Alu 1 307 -5 26 0 0 0 chr13 30140354 30140380 -71732789 + AT_rich Low_complexity Low_complexity 1 26 0 1495 178 44 24 chr13 30140571 30140864 -71732305 + AluJb SINE Alu 1 299 -13 1699 223 27 5 chr13 30141291 30141704 -71731465 - L1MB2 LINE L1 -870 5340 4919 1481 163 72 39 chr13 30141714 30142077 -71731092 - THE1C LTR MaLR 0 375 1 9753 129 7 39 chr13 30142079 30143701 -71729468 - THE1C-int LTR MaLR -7 1573 3 1695 153 72 28 chr13 30143703 30144062 -71729107 - THE1C LTR MaLR 0 375 1 2129 183 52 35 chr13 30144079 30144563 -71728606 - L1MB2 LINE L1 -1311 4899 4403 13630 153 19 10 chr13 30144563 30146960 -71726209 - Tigger1 DNA MER2_type 0 2418 1 2129 183 52 35 chr13 30146960 30147212 -71725957 - L1MB2 LINE L1 -1807 4403 4157 387 109 0 0 chr13 30147212 30147276 -71725893 + MER73 LTR ERVL 1 64 -580 475 236 2 46 chr13 30147277 30147460 -71725709 - L1MB2 LINE L1 -5053 1078 907 393 333 42 66 chr13 30147864 30148243 -71724926 - L1MB2 LINE L1 -5497 634 265 377 348 63 52 chr13 30148346 30148728 -71724441 - L1MEd LINE L1 -5355 764 379 2257 170 26 19 chr13 30148763 30148784 -71724385 - MSTB LTR MaLR -5 421 402 2198 143 80 5 chr13 30148784 30149182 -71723987 + MSTA LTR MaLR 1 428 0 2257 170 26 19 chr13 30149182 30149578 -71723591 - MSTB LTR MaLR -24 402 1 341 339 47 47 chr13 30150185 30150507 -71722662 - L1MEd LINE L1 -5732 387 66 1521 266 97 58 chr13 30150817 30151521 -71721648 - MER21B LTR ERV1 -129 734 4 21 0 0 0 chr13 30151615 30151636 -71721533 + AT_rich Low_complexity Low_complexity 1 21 0 266 352 89 45 chr13 30153459 30153930 -71719239 + L2 LINE L2 2599 3085 -187 1344 265 35 53 chr13 30154034 30154303 -71718866 - LTR16A LTR ERVL -13 437 177 2348 139 42 40 chr13 30154303 30154728 -71718441 + MSTB LTR MaLR 1 426 0 1344 265 35 53 chr13 30154728 30154888 -71718281 - LTR16A LTR ERVL -273 177 16 181 382 45 27 chr13 30154903 30155013 -71718156 + L2 LINE L2 3202 3313 0 187 292 0 0 chr13 30156700 30156748 -71716421 - MER5B DNA MER1_type -81 97 50 1398 181 73 16 chr13 30157603 30157918 -71715251 + L1MA3 LINE L1 5970 6302 -3 295 301 0 12 chr13 30158410 30158493 -71714676 + MIR3 SINE MIR 114 195 -13 489 239 93 58 chr13 30159004 30159309 -71713860 + LTR37A LTR ERV1 8 289 -137 306 0 0 0 chr13 30159309 30159343 -71713826 + (CA)n Simple_repeat Simple_repeat 2 35 0 489 239 93 58 chr13 30159343 30159487 -71713682 + LTR37A LTR ERV1 289 426 0 205 308 89 48 chr13 30159487 30159633 -71713536 - L2 LINE L2 -4 3309 3158 183 129 0 0 chr13 30160734 30160765 -71712404 + (TAGG)n Simple_repeat Simple_repeat 1 31 0 964 290 41 52 chr13 30160765 30161248 -71711921 - MLT2B1 LTR ERVL -42 478 1 7741 197 45 40 chr13 30161318 30162120 -71711049 + L1M4 LINE L1 6 803 -5525 2197 91 14 0 chr13 30162120 30162405 -71710764 - AluSx SINE Alu -23 289 1 7741 197 45 40 chr13 30162405 30165607 -71707562 + L1M4 LINE L1 803 4075 -2253 407 21 0 0 chr13 30165607 30165655 -71707514 + tRNA-Gln-CAG tRNA tRNA 1 48 -27 7741 197 45 40 chr13 30165655 30165814 -71707355 + L1M4 LINE L1 4075 4232 -2096 477 209 111 45 chr13 30165916 30166093 -71707076 + L1M4 LINE L1 5403 5587 -743 26 0 0 0 chr13 30166127 30166153 -71707016 + AT_rich Low_complexity Low_complexity 1 26 0 328 272 12 41 chr13 30166183 30166352 -71706817 - L1MDa LINE L1 -5079 1533 1300 22 56 0 0 chr13 30168709 30168745 -71704424 + AT_rich Low_complexity Low_complexity 1 36 0 377 340 19 12 chr13 30170267 30170429 -71702740 - MIR3 SINE MIR -1 207 45 1814 269 81 30 chr13 30171201 30171911 -71701258 - L1ME3A LINE L1 -26 6144 5344 2439 74 0 0 chr13 30171911 30172209 -71700960 + AluSc SINE Alu 1 298 -11 1814 269 81 30 chr13 30172209 30172717 -71700452 - L1ME3A LINE L1 -826 5344 4864 223 288 0 25 chr13 30173765 30173845 -71699324 + (TATTG)n Simple_repeat Simple_repeat 3 80 0 333 225 65 35 chr13 30174685 30174855 -71698314 + L1MC4 LINE L1 7600 7884 -158 254 316 0 0 chr13 30174883 30174962 -71698207 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 248 250 103 9 chr13 30174973 30175089 -71698080 + L1MC4 LINE L1 7916 8042 0 24 32 0 0 chr13 30175169 30175200 -71697969 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr13 30175733 30175783 -71697386 + AT_rich Low_complexity Low_complexity 1 50 0 10946 180 34 16 chr13 30176292 30178529 -71694640 + L1P LINE L1 1744 4020 -2126 5081 152 1 57 chr13 30178528 30179453 -71693716 - THE1C-int LTR MaLR -705 875 3 * 1587 173 58 28 chr13 30179455 30179819 -71693350 - THE1C LTR MaLR 0 375 1 2040 114 0 0 chr13 30179884 30180157 -71693012 + AluSg SINE Alu 1 273 -37 184 77 51 0 chr13 30180161 30180200 -71692969 + (TATAA)n Simple_repeat Simple_repeat 4 44 0 23 33 0 0 chr13 30181852 30181882 -71691287 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 30181993 30182015 -71691154 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 30182219 30182263 -71690906 + AT_rich Low_complexity Low_complexity 1 44 0 248 302 35 9 chr13 30182375 30182491 -71690678 - L1MC/D LINE L1 -2284 5524 5406 23 0 0 0 chr13 30182520 30182543 -71690626 + AT_rich Low_complexity Low_complexity 1 23 0 2123 82 39 0 chr13 30182544 30182824 -71690345 - AluY SINE Alu -20 291 1 399 276 70 27 chr13 30182828 30183013 -71690156 - L1MC/D LINE L1 -762 5384 5192 366 314 151 6 chr13 30183124 30183449 -71689720 - L1ME3A LINE L1 -1282 4864 4493 435 281 168 27 chr13 30183469 30183687 -71689482 - L1ME3A LINE L1 -1617 4529 4343 2204 100 17 3 chr13 30183687 30183986 -71689183 - AluSg SINE Alu -7 303 1 435 281 168 27 chr13 30183986 30184173 -71688996 - L1ME3A LINE L1 -1803 4343 4067 407 312 93 34 chr13 30184216 30184453 -71688716 - MIR SINE MIR -11 251 1 466 310 76 35 chr13 30184543 30185146 -71688023 - L1ME3A LINE L1 -2155 3991 3364 304 289 21 37 chr13 30185410 30185461 -71687708 - L1ME3A LINE L1 -3111 3035 2985 732 92 25 0 chr13 30185461 30185580 -71687589 - L1MA5 LINE L1 -1 6299 6178 304 289 21 37 chr13 30185580 30185715 -71687454 - L1ME3A LINE L1 -3161 2985 2852 6626 133 52 27 chr13 30185831 30187031 -71686138 + Tigger3b DNA MER2_type 1 1231 0 202 372 139 0 chr13 30187431 30187517 -71685652 + L2 LINE L2 3156 3253 -19 398 125 50 12 chr13 30187753 30187913 -71685256 + (TA)n Simple_repeat Simple_repeat 1 166 0 1788 123 3 0 chr13 30188001 30188285 -71684884 - L1MA4 LINE L1 -1 6299 6015 29 28 0 0 chr13 30189101 30189137 -71684032 + AT_rich Low_complexity Low_complexity 1 36 0 703 335 58 4 chr13 30189802 30190044 -71683125 + MIR SINE MIR 4 258 -4 1293 249 94 5 chr13 30190311 30190692 -71682477 - LTR52 LTR ERVL -1 420 6 24 32 0 0 chr13 30191514 30191545 -71681624 + AT_rich Low_complexity Low_complexity 1 31 0 2016 131 0 3 chr13 30191949 30192255 -71680914 + AluY SINE Alu 1 305 -6 246 288 0 0 chr13 30192566 30192639 -71680530 + L1ME LINE L1 5588 5660 -461 538 158 16 31 chr13 30192678 30192805 -71680364 + AluJb SINE Alu 1 125 -187 318 217 14 0 chr13 30192831 30192900 -71680269 + L1ME1 LINE L1 3775 3844 -2302 2330 258 33 37 chr13 30192922 30194178 -71678991 + L1ME1 LINE L1 4875 6119 -47 24 0 0 0 chr13 30194182 30194206 -71678963 + AT_rich Low_complexity Low_complexity 1 24 0 596 359 103 34 chr13 30194311 30195203 -71677966 - L2 LINE L2 0 3272 2282 401 290 80 45 chr13 30195272 30195472 -71677697 - MIR SINE MIR -2 260 54 322 242 9 52 chr13 30195887 30196002 -71677167 + MIR SINE MIR 57 166 -83 198 0 0 0 chr13 30196084 30196106 -71677063 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 602 328 62 4 chr13 30196436 30196677 -71676492 + MIR SINE MIR 8 262 0 473 169 12 0 chr13 30196749 30196832 -71676337 - AluJ/FLAM SINE Alu -228 84 1 1362 208 88 48 chr13 30200006 30200451 -71672718 - LTR56 LTR ERV1 0 440 4 825 177 151 10 chr13 30201241 30201433 -71671736 - MER20 DNA MER1_type 0 219 1 201 296 200 9 chr13 30201757 30201872 -71671297 - MIR SINE MIR -44 218 82 23 0 0 0 chr13 30202094 30202117 -71671052 + AT_rich Low_complexity Low_complexity 1 23 0 540 281 157 0 chr13 30202448 30202633 -71670536 + MIR SINE MIR 49 262 0 23 54 0 0 chr13 30202855 30202892 -71670277 + AT_rich Low_complexity Low_complexity 1 37 0 1365 282 69 22 chr13 30203225 30203754 -71669415 - MLT1F1 LTR MaLR -12 555 1 1417 148 21 4 chr13 30205141 30205378 -71667791 + MLT2C1 LTR ERVL 1 241 -156 246 136 0 0 chr13 30205379 30205423 -71667746 + (CA)n Simple_repeat Simple_repeat 1 44 0 353 378 46 0 chr13 30205537 30205754 -71667415 - L2 LINE L2 -792 2522 2296 22 0 0 0 chr13 30208949 30208971 -71664198 + AT_rich Low_complexity Low_complexity 1 22 0 1086 266 95 38 chr13 30209017 30209544 -71663625 + MER34B LTR ERV1 9 565 0 1554 242 117 26 chr13 30210336 30210848 -71662321 + MLT1F1 LTR MaLR 1 567 0 1497 165 24 31 chr13 30210866 30211157 -71662012 + AluJb SINE Alu 4 292 -20 186 71 0 0 chr13 30211631 30211659 -71661510 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1331 195 8 22 chr13 30211671 30211938 -71661231 - AluJo SINE Alu 0 312 50 5717 103 26 20 chr13 30212333 30212409 -71660760 + L1PA13 LINE L1 5254 5328 -835 2389 88 0 0 chr13 30212409 30212703 -71660466 + AluSc SINE Alu 1 294 -15 5717 103 26 20 chr13 30212703 30213530 -71659639 + L1PA13 LINE L1 5328 6163 0 27 29 0 0 chr13 30215626 30215660 -71657509 + AT_rich Low_complexity Low_complexity 1 34 0 435 217 0 47 chr13 30216409 30216515 -71656654 - Charlie7 DNA MER1_type -330 2282 2182 480 235 102 32 chr13 30216541 30216699 -71656470 + MIR SINE MIR 29 203 -59 2389 77 0 0 chr13 30216699 30216996 -71656173 + AluY SINE Alu 6 302 -9 480 235 102 32 chr13 30216996 30217024 -71656145 + MIR SINE MIR 203 228 -34 1212 271 139 12 chr13 30217152 30217513 -71655656 - Charlie7 DNA MER1_type -1235 1377 1063 1460 179 120 7 chr13 30217513 30217821 -71655348 + MER2 DNA MER2_type 2 344 0 1212 271 139 12 chr13 30217821 30218035 -71655134 - Charlie7 DNA MER1_type -1549 1063 729 860 282 75 34 chr13 30218081 30218559 -71654610 - Charlie7 DNA MER1_type -2060 552 55 191 247 156 26 chr13 30220291 30220368 -71652801 + MIR SINE MIR 176 262 0 7630 57 4 0 chr13 30220899 30222653 -71650516 - L1PA5 LINE L1 -1 6153 4396 6450 29 1 0 chr13 30222653 30223421 -71649748 + L1PA5 LINE L1 3630 4398 -1748 463 217 57 19 chr13 30223607 30223641 -71649528 - L1MA10 LINE L1 0 6334 6301 3488 243 66 35 chr13 30223641 30225881 -71647288 - L1ME1 LINE L1 -31 6135 3821 963 247 97 22 chr13 30225897 30226486 -71646683 + L1ME LINE L1 4821 5449 -713 479 260 75 58 chr13 30226488 30226780 -71646389 + L1M4 LINE L1 4563 4859 -1287 357 268 152 49 chr13 30226804 30226968 -71646201 + MER5A DNA MER1_type 9 189 0 1791 181 7 0 chr13 30227922 30228221 -71644948 + AluJb SINE Alu 1 301 -11 1440 138 149 68 chr13 30228280 30228649 -71644520 - MER57A LTR ERV1 0 403 5 189 0 0 0 chr13 30229331 30229352 -71643817 + (T)n Simple_repeat Simple_repeat 1 21 0 1932 256 50 8 chr13 30229813 30230309 -71642860 + LTR40a LTR ERVL 1 517 -2 2441 76 0 0 chr13 30230480 30230782 -71642387 - AluY SINE Alu -9 302 1 201 310 103 17 chr13 30231680 30231796 -71641373 - MIR SINE MIR -108 154 29 * 263 250 60 50 chr13 30231794 30231894 -71641275 + MIR SINE MIR 162 262 0 199 275 145 58 chr13 30231966 30232104 -71641065 - L2 LINE L2 0 3313 3164 248 256 184 16 chr13 30234398 30234523 -71638646 - MIR SINE MIR -18 244 99 355 313 60 0 chr13 30235508 30235674 -71637495 + MIR SINE MIR 67 242 -20 304 249 31 204 chr13 30235650 30235939 -71637230 - MIR SINE MIR -21 241 3 * 312 301 41 16 chr13 30235962 30236085 -71637084 + MER94 DNA DNA 9 134 0 1930 231 108 17 chr13 30237079 30237599 -71635570 - MLT1F1 LTR MaLR 0 567 1 1301 200 31 78 chr13 30237703 30238088 -71635081 - MLT2D LTR ERVL -47 367 1 1194 203 94 26 chr13 30238125 30238391 -71634778 + AluJb SINE Alu 1 284 -18 205 267 17 0 chr13 30239904 30239964 -71633205 + (TGAA)n Simple_repeat Simple_repeat 3 63 0 1555 204 0 0 chr13 30240312 30240596 -71632573 - AluJo SINE Alu -16 296 13 228 362 101 7 chr13 30241357 30241506 -71631663 + MIR SINE MIR 35 197 -65 266 284 54 0 chr13 30241527 30241601 -71631568 - MIR SINE MIR -1 261 184 185 281 47 31 chr13 30241607 30241671 -71631498 + MIR SINE MIR 194 258 -4 7686 25 0 7 chr13 30242013 30243315 -71629854 - L1PA3 LINE L1 -3 6152 4854 19317 27 2 1 chr13 30243315 30245643 -71627526 + L1PA3 LINE L1 2527 4857 -1289 380 250 109 26 chr13 30245736 30245892 -71627277 + MIR SINE MIR 86 254 -8 21 36 0 0 chr13 30246076 30246104 -71627065 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 30246965 30246988 -71626181 + AT_rich Low_complexity Low_complexity 1 23 0 181 122 98 24 chr13 30247238 30247279 -71625890 - MIR SINE MIR -13 249 206 342 0 0 0 chr13 30247526 30247564 -71625605 + (CA)n Simple_repeat Simple_repeat 1 38 0 284 370 25 8 chr13 30247565 30247684 -71625485 + MIR SINE MIR 32 152 -110 5256 89 61 6 chr13 30248207 30248990 -71624179 - LTR12 LTR ERV1 0 826 1 193 261 20 181 chr13 30249478 30249677 -71623492 + MER5B DNA MER1_type 1 167 -11 481 324 51 57 chr13 30249697 30249784 -71623385 - MER102a DNA MER1_type -1123 294 208 2502 50 0 0 chr13 30249784 30250082 -71623087 + AluY SINE Alu 1 298 -13 481 324 51 57 chr13 30250082 30250290 -71622879 - MER102a DNA MER1_type -1209 208 1 197 197 16 0 chr13 30250722 30250783 -71622386 + CT-rich Low_complexity Low_complexity 1 62 0 403 309 106 57 chr13 30252107 30252389 -71620780 - L1MEd LINE L1 -5369 750 455 324 276 70 124 chr13 30252426 30252813 -71620356 - L1MEd LINE L1 -5751 368 3 1126 21 0 0 chr13 30252926 30253069 -71620100 - L1P2 LINE L1 -724 5431 5289 1923 153 0 25 chr13 30253141 30253461 -71619708 + AluSx SINE Alu 1 312 0 22 0 0 0 chr13 30254319 30254341 -71618828 + AT_rich Low_complexity Low_complexity 1 22 0 201 328 22 89 chr13 30254421 30254601 -71618568 - MIR3 SINE MIR -21 187 20 281 270 35 26 chr13 30254947 30254995 -71618174 - L1ME LINE L1 -301 5863 5817 3760 63 2 8 chr13 30254995 30255499 -71617670 - L1PA8 LINE L1 -1 6171 5671 281 270 35 26 chr13 30255499 30255565 -71617604 - L1ME LINE L1 -347 5817 5748 210 248 98 68 chr13 30256442 30256575 -71616594 + MIR SINE MIR 82 218 -44 282 143 0 0 chr13 30256983 30257032 -71616137 + (CA)n Simple_repeat Simple_repeat 2 50 0 210 239 0 0 chr13 30257794 30257865 -71615304 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 6008 139 14 1 chr13 30258025 30259212 -71613957 + L1PB1 LINE L1 4949 6150 -1 1109 255 164 34 chr13 30259367 30259886 -71613283 + L1ME3A LINE L1 5016 5466 -704 2340 96 0 10 chr13 30259886 30260198 -71612971 - AluSc SINE Alu 0 309 1 1109 255 164 34 chr13 30260198 30260688 -71612481 + L1ME3A LINE L1 5466 6161 -9 234 238 60 48 chr13 30260864 30260948 -71612221 - MIR SINE MIR -12 250 166 438 298 101 55 chr13 30260963 30261289 -71611880 + MLT1L LTR MaLR 47 387 -228 281 302 48 24 chr13 30261296 30261422 -71611747 - MIR SINE MIR -71 191 63 2483 118 3 8 chr13 30261655 30262021 -71611148 + THE1B LTR MaLR 1 364 0 735 222 98 10 chr13 30263123 30263326 -71609843 + MER58A DNA MER1_type 3 223 -1 615 240 49 101 chr13 30266186 30266453 -71606716 - L3b LINE CR1 -141 1442 1190 376 196 216 0 chr13 30266985 30267087 -71606082 + MIR SINE MIR 73 196 -66 246 62 0 0 chr13 30267712 30267744 -71605425 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr13 30268609 30268638 -71604531 + (TA)n Simple_repeat Simple_repeat 1 29 0 300 158 0 0 chr13 30276302 30276359 -71596810 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr13 30276386 30276408 -71596761 + AT_rich Low_complexity Low_complexity 1 22 0 211 259 0 19 chr13 30276487 30276541 -71596628 - L3 LINE CR1 -288 1289 1237 269 151 19 19 chr13 30276984 30277037 -71596132 + MLT1J1 LTR MaLR 71 123 -323 4473 248 103 73 chr13 30277158 30278349 -71594820 + L1ME1 LINE L1 2511 3665 -2481 1555 162 92 94 chr13 30278349 30278805 -71594364 - MSTB2 LTR MaLR 0 457 3 4473 248 103 73 chr13 30278805 30278970 -71594199 + L1ME1 LINE L1 3665 3824 -2322 1487 61 0 5 chr13 30278970 30279167 -71594002 + L1PA4 LINE L1 5957 6152 -3 4473 248 103 73 chr13 30279167 30279520 -71593649 + L1ME1 LINE L1 3824 4165 -1981 2092 126 7 0 chr13 30279520 30279814 -71593355 - AluSq SINE Alu -17 296 1 4473 248 103 73 chr13 30279814 30280909 -71592260 + L1ME1 LINE L1 4165 5401 -745 776 236 64 14 chr13 30280909 30281129 -71592040 - MER96B DNA MER1_type? -182 235 5 2156 263 31 35 chr13 30281129 30281902 -71591267 + L1ME1 LINE L1 5392 6161 -5 2881 9 0 0 chr13 30282583 30282900 -71590269 - AluYb8 SINE Alu -1 317 1 314 339 41 0 chr13 30283043 30283164 -71590005 + MIR3 SINE MIR 81 206 -2 812 271 119 28 chr13 30283178 30283816 -71589353 - HsTC2a DNA Tc2 -3 739 2 306 0 0 0 chr13 30283954 30283988 -71589181 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 75 0 0 chr13 30283988 30284028 -71589141 + (GA)n Simple_repeat Simple_repeat 1 40 0 735 294 11 6 chr13 30285161 30285341 -71587828 + MIR3 SINE MIR 20 200 -8 2165 90 0 10 chr13 30287595 30287894 -71585275 - AluY SINE Alu -15 296 1 1974 170 33 0 chr13 30288486 30288821 -71584348 - MER7A DNA MER2_type -2 344 1 2553 107 33 3 chr13 30289121 30289484 -71583685 - THE1C LTR MaLR -1 374 1 2280 107 0 0 chr13 30289513 30289823 -71583346 + AluSg SINE Alu 1 310 0 384 307 136 40 chr13 30289962 30290190 -71582979 + MIR SINE MIR 13 262 0 515 287 66 0 chr13 30290396 30290563 -71582606 - MER5B DNA MER1_type 0 178 1 952 224 144 44 chr13 30291928 30292268 -71580901 - MLT1A2 LTR MaLR 0 374 1 1110 192 11 72 chr13 30292269 30292545 -71580624 - MLT1E2-int LTR MaLR -1 1734 1476 328 227 35 28 chr13 30292601 30292738 -71580431 - MLT1E2-int LTR MaLR -490 881 653 1539 230 0 3 chr13 30292756 30293108 -71580061 - L1P LINE L1 -3453 2693 2343 6087 202 38 7 chr13 30293141 30295232 -71577937 + L1PA15 LINE L1 4031 6148 -17 1909 221 10 10 chr13 30295907 30296305 -71576864 - MLT1E2-int LTR MaLR -714 657 260 2737 233 176 32 chr13 30296332 30297870 -71575299 + L1M3e LINE L1 1 2361 -4676 475 283 72 0 chr13 30297991 30298129 -71575040 - MIR SINE MIR -99 163 16 5711 85 2 6 chr13 30298393 30299179 -71573990 - L1PA11 LINE L1 0 6174 5392 241 302 60 12 chr13 30299211 30299295 -71573874 - MIR SINE MIR -61 147 64 252 239 90 30 chr13 30299934 30300068 -71573101 + HAL1b LINE L1 778 919 -429 1362 177 13 17 chr13 30300073 30300310 -71572859 + AluJo SINE Alu 49 284 -28 210 71 0 0 chr13 30300310 30300338 -71572831 + (TA)n Simple_repeat Simple_repeat 2 29 0 202 196 39 0 chr13 30300399 30300450 -71572719 + (TA)n Simple_repeat Simple_repeat 1 53 0 594 360 92 15 chr13 30300933 30301333 -71571836 + L2 LINE L2 2230 2660 -654 352 367 48 59 chr13 30301431 30301701 -71571468 + L2 LINE L2 3004 3270 -2 1593 252 42 113 chr13 30301791 30302834 -71570335 + L1ME LINE L1 142 1110 -5095 * 3264 272 58 45 chr13 30302818 30303254 -71569915 + L1ME LINE L1 1495 1924 -4291 1581 249 123 19 chr13 30303254 30303821 -71569348 - MLT1E2 LTR MaLR 0 626 1 3264 272 58 45 chr13 30303821 30304347 -71568822 + L1ME LINE L1 1924 2441 -3774 1393 212 3 12 chr13 30304347 30304672 -71568497 + L1MB7 LINE L1 5862 6183 -1 3264 272 58 45 chr13 30304672 30304942 -71568227 + L1ME LINE L1 2441 2706 -3509 444 0 29 43 chr13 30304942 30305011 -71568158 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 3264 272 58 45 chr13 30305011 30305025 -71568144 + L1ME LINE L1 2706 2718 -3497 2304 108 0 0 chr13 30305025 30305331 -71567838 + AluY SINE Alu 1 306 -5 3264 272 58 45 chr13 30305331 30305958 -71567211 + L1ME LINE L1 2718 3335 -2880 2231 133 0 0 chr13 30305958 30306267 -71566902 + AluSx SINE Alu 3 311 -1 3264 272 58 45 chr13 30306267 30306878 -71566291 + L1ME LINE L1 3335 3971 -2244 1523 205 158 2 chr13 30306885 30307285 -71565884 - MLT1D LTR MaLR -42 463 2 200 244 44 0 chr13 30307534 30307579 -71565590 + L3 LINE CR1 1428 1474 -103 890 230 148 26 chr13 30307615 30307967 -71565202 - L1MC4a LINE L1 -2 7806 7412 * 2359 252 91 19 chr13 30307962 30308423 -71564746 + L1ME LINE L1 3961 4387 -1828 2147 125 0 3 chr13 30308423 30308720 -71564449 + AluSx SINE Alu 1 296 -16 2359 252 91 19 chr13 30308720 30309363 -71563806 + L1ME LINE L1 4387 5251 -964 187 358 12 37 chr13 30309368 30309449 -71563720 - MIR SINE MIR -171 91 13 193 340 137 46 chr13 30309714 30309867 -71563302 + MIR3 SINE MIR 15 181 -27 2049 97 4 0 chr13 30311056 30311358 -71561811 - AluSg SINE Alu 0 316 14 1118 209 90 16 chr13 30312450 30312761 -71560408 - L1ME3A LINE L1 -219 5951 5618 223 277 0 46 chr13 30312973 30313038 -71560131 - L2 LINE L2 0 3272 3211 322 269 201 20 chr13 30313081 30313230 -71559939 - MIR3 SINE MIR 0 208 33 21 0 0 0 chr13 30315446 30315467 -71557702 + AT_rich Low_complexity Low_complexity 1 21 0 389 256 23 30 chr13 30316146 30316279 -71556890 + MER58C DNA MER1_type 80 211 -4 311 254 115 16 chr13 30317525 30317647 -71555522 + MER94 DNA DNA 1 134 0 668 207 41 0 chr13 30317713 30317858 -71555311 - MIR SINE MIR -33 229 79 236 342 72 26 chr13 30317878 30318071 -71555098 - MIR SINE MIR -14 248 47 371 337 29 49 chr13 30318930 30319176 -71553993 + MIR SINE MIR 16 256 -6 351 300 138 12 chr13 30319190 30319350 -71553819 + MIR SINE MIR 77 256 -6 21 0 0 0 chr13 30320760 30320781 -71552388 + AT_rich Low_complexity Low_complexity 1 21 0 336 301 165 0 chr13 30321437 30321570 -71551599 - MIR SINE MIR -1 261 107 243 208 14 42 chr13 30322203 30322275 -71550894 - MIR SINE MIR -1 261 192 221 284 111 0 chr13 30322345 30322426 -71550743 - MIR SINE MIR -78 184 95 31 44 0 0 chr13 30322763 30322808 -71550361 + AT_rich Low_complexity Low_complexity 1 45 0 1200 228 37 51 chr13 30322811 30322986 -71550183 - AluJo SINE Alu -20 292 121 420 37 0 0 chr13 30322986 30323040 -71550129 + (TG)n Simple_repeat Simple_repeat 1 54 0 1200 228 37 51 chr13 30323040 30323158 -71550011 - AluJo SINE Alu -191 121 3 279 282 150 23 chr13 30323391 30323611 -71549558 + L1MEd LINE L1 994 1241 -4878 1138 277 43 26 chr13 30323665 30324127 -71549042 + L1MC4a LINE L1 5602 6071 -1737 2148 119 0 10 chr13 30324656 30324968 -71548201 + AluSc SINE Alu 1 309 0 259 254 0 0 chr13 30325812 30325879 -71547290 + L1MC4a LINE L1 5199 5265 -881 4480 126 26 10 chr13 30328188 30328905 -71544264 + L1PA15 LINE L1 5437 6165 0 257 360 122 48 chr13 30328945 30329298 -71543871 - L2 LINE L2 0 3272 2894 256 282 29 29 chr13 30329557 30329660 -71543509 + MIR SINE MIR 18 120 -88 515 301 49 11 chr13 30329660 30329843 -71543326 + MIR SINE MIR 25 214 -48 400 312 106 32 chr13 30329844 30330212 -71542957 + LTR16C LTR ERVL 1 490 -1 401 146 45 22 chr13 30331193 30331282 -71541887 + L1MC5 LINE L1 7352 7442 -519 219 333 14 0 chr13 30331398 30331470 -71541699 - MIR SINE MIR -26 236 164 931 226 114 68 chr13 30331471 30331875 -71541294 - MLT1H LTR MaLR -7 588 1 226 288 71 94 chr13 30332109 30332279 -71540890 + L2 LINE L2 3147 3312 -1 487 255 108 85 chr13 30333145 30333321 -71539848 + L1MC4a LINE L1 5589 5776 -2032 333 0 0 0 chr13 30333321 30333358 -71539811 + (TA)n Simple_repeat Simple_repeat 1 37 0 487 255 108 85 chr13 30333358 30333487 -71539682 + L1MC4a LINE L1 5776 5901 -1907 349 311 39 0 chr13 30334371 30334474 -71538695 - MER5B DNA MER1_type 0 178 72 770 249 55 76 chr13 30334486 30334816 -71538353 - MER77 LTR ERV1 -230 375 53 645 254 47 31 chr13 30334847 30335040 -71538129 + L1ME3A LINE L1 5967 6162 -8 226 282 0 29 chr13 30335307 30335395 -71537774 + GA-rich Low_complexity Low_complexity 1 85 0 600 261 85 94 chr13 30335510 30335862 -71537307 - LTR16A1 LTR ERVL -31 426 78 3016 158 34 16 chr13 30336226 30336778 -71536391 + L1MA8 LINE L1 5545 6106 -185 1928 101 0 36 chr13 30336780 30337058 -71536111 + AluY SINE Alu 1 268 -43 640 90 0 0 chr13 30337058 30337147 -71536022 + Alu SINE Alu 220 308 -4 1041 65 0 0 chr13 30337154 30337278 -71535891 + AluY SINE Alu 7 130 -181 5021 148 35 13 chr13 30337282 30337834 -71535335 + L1PB4 LINE L1 5219 5805 -351 414 0 0 0 chr13 30337834 30337880 -71535289 + (TA)n Simple_repeat Simple_repeat 2 47 0 5021 148 35 13 chr13 30337880 30338240 -71534929 + L1PB4 LINE L1 5805 6156 0 2048 154 0 0 chr13 30338925 30339224 -71533945 + AluSx SINE Alu 1 299 -13 203 262 0 0 chr13 30340336 30340378 -71532791 + L2 LINE L2 3254 3295 -18 180 0 0 0 chr13 30340527 30340547 -71532622 + (T)n Simple_repeat Simple_repeat 1 20 0 241 228 18 0 chr13 30341154 30341211 -71531958 + CT-rich Low_complexity Low_complexity 1 58 0 1634 199 17 0 chr13 30341293 30341595 -71531574 - AluJo SINE Alu -5 307 1 234 379 23 43 chr13 30341704 30342053 -71531116 + L2 LINE L2 2722 3063 -209 218 146 0 36 chr13 30342218 30342273 -71530896 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 25 0 0 0 chr13 30342503 30342528 -71530641 + AT_rich Low_complexity Low_complexity 1 25 0 239 242 250 24 chr13 30342565 30342689 -71530480 - MIR SINE MIR -101 161 10 24 32 0 0 chr13 30342904 30342935 -71530234 + AT_rich Low_complexity Low_complexity 1 31 0 900 226 40 82 chr13 30342995 30343349 -71529820 + MER47A DNA MER2_type 27 365 -1 2736 37 0 0 chr13 30343522 30343848 -71529321 - L1PA4 LINE L1 -3 6152 5827 273 29 0 0 chr13 30344303 30344337 -71528832 + (GAAAA)n Simple_repeat Simple_repeat 3 36 0 182 359 57 31 chr13 30344337 30344496 -71528673 - L2 LINE L2 -740 2574 2412 2109 135 3 10 chr13 30344752 30345064 -71528105 - AluY SINE Alu -1 310 1 713 310 26 9 chr13 30347987 30348216 -71524953 + MIR SINE MIR 18 250 -12 449 303 191 8 chr13 30350053 30350294 -71522875 + L3b LINE CR1 1202 1486 -97 22 0 0 0 chr13 30351918 30351940 -71521229 + AT_rich Low_complexity Low_complexity 1 22 0 3055 149 14 60 chr13 30352142 30352210 -71520959 - MLT2B3 LTR ERVL -2 518 448 617 48 29 19 chr13 30352210 30352313 -71520856 + (TAGA)n Simple_repeat Simple_repeat 2 105 0 3055 149 14 60 chr13 30352313 30352839 -71520330 - MLT2B3 LTR ERVL -72 448 1 1302 254 123 41 chr13 30353214 30353496 -71519673 - MER21B LTR ERV1 -128 735 478 2332 95 0 16 chr13 30353496 30353813 -71519356 + AluSq SINE Alu 1 312 -1 1302 254 123 41 chr13 30353813 30354194 -71518975 - MER21B LTR ERV1 -385 478 17 338 263 0 90 chr13 30354221 30354377 -71518792 + L2 LINE L2 3172 3313 0 314 169 0 46 chr13 30354536 30354601 -71518568 - L2 LINE L2 -1 3312 3251 2358 141 53 12 chr13 30354698 30355109 -71518060 - MSTA LTR MaLR 0 428 1 1817 164 3 20 chr13 30355682 30355981 -71517188 - AluJo SINE Alu -18 294 1 715 285 96 22 chr13 30357490 30357550 -71515619 + MLT1J LTR MaLR 61 115 -396 2351 75 0 3 chr13 30357550 30357843 -71515326 - AluY SINE Alu -19 292 1 715 285 96 22 chr13 30357843 30358094 -71515075 + MLT1J LTR MaLR 115 395 -116 737 262 93 42 chr13 30359134 30359194 -71513975 + MLT1J LTR MaLR 61 116 -395 2387 68 0 3 chr13 30359194 30359487 -71513682 - AluY SINE Alu -19 292 1 737 262 93 42 chr13 30359487 30359758 -71513411 + MLT1J LTR MaLR 116 409 -102 257 224 0 0 chr13 30359951 30360000 -71513169 + (TATG)n Simple_repeat Simple_repeat 3 51 0 247 388 62 31 chr13 30361509 30361736 -71511433 - L2 LINE L2 -114 3158 2925 301 255 153 0 chr13 30361861 30361959 -71511210 + L2 LINE L2 3201 3313 0 386 259 20 51 chr13 30362026 30362224 -71510945 + L1M1 LINE L1 5661 5849 -318 22 0 0 0 chr13 30362467 30362489 -71510680 + AT_rich Low_complexity Low_complexity 1 22 0 760 249 79 9 chr13 30362609 30362854 -71510315 + MIR SINE MIR 1 258 -4 451 302 59 105 chr13 30362975 30363587 -71509582 - L2 LINE L2 -576 2738 2155 2813 169 58 21 chr13 30363654 30364188 -71508981 + MLT2B3 LTR ERVL 1 554 0 334 350 32 6 chr13 30364200 30364357 -71508812 - L1M4 LINE L1 -1983 4163 4003 208 139 0 0 chr13 30364678 30364714 -71508455 + (T)n Simple_repeat Simple_repeat 1 36 0 377 150 170 20 chr13 30365412 30365512 -71507657 + MER58 DNA MER1_type 2306 2420 0 426 224 24 97 chr13 30365722 30365887 -71507282 - MER20 DNA MER1_type -66 153 1 816 226 17 52 chr13 30370315 30370545 -71502624 + MER58A DNA MER1_type 2 223 -1 253 78 0 39 chr13 30370859 30370910 -71502259 + (CATTT)n Simple_repeat Simple_repeat 2 50 0 553 93 43 14 chr13 30371249 30371389 -71501780 + (TAGA)n Simple_repeat Simple_repeat 1 144 0 223 266 16 47 chr13 30371412 30371476 -71501693 + MIR SINE MIR 17 78 -130 255 347 162 0 chr13 30372665 30372838 -71500331 - MIR SINE MIR -54 208 8 208 346 99 0 chr13 30372892 30372973 -71500196 - MIR SINE MIR -86 122 34 1484 223 43 43 chr13 30373214 30373676 -71499493 - MLT1C LTR MaLR 0 467 6 296 242 107 13 chr13 30373875 30373989 -71499180 + MIR SINE MIR 20 156 -63 2285 95 0 3 chr13 30375879 30376174 -71496995 + AluSg SINE Alu 1 294 -16 231 36 0 0 chr13 30376175 30376203 -71496966 + (TA)n Simple_repeat Simple_repeat 1 28 0 392 318 143 49 chr13 30376203 30376273 -71496896 + L2 LINE L2 2709 2771 -542 2133 146 0 0 chr13 30376273 30376567 -71496602 + AluSx SINE Alu 1 294 -18 392 318 143 49 chr13 30376567 30377035 -71496134 + L2 LINE L2 2771 3302 -11 2290 98 3 3 chr13 30377085 30377380 -71495789 + AluSc SINE Alu 1 295 -14 2323 92 3 20 chr13 30377606 30377932 -71495237 + AluSx SINE Alu 1 312 0 1463 179 7 11 chr13 30378995 30379268 -71493901 - AluJb SINE Alu 0 312 41 353 294 61 103 chr13 30379756 30380344 -71492825 + L2 LINE L2 2696 3270 -43 581 267 204 55 chr13 30381660 30382128 -71491041 + L2 LINE L2 2709 3281 -32 1833 163 14 7 chr13 30382128 30382423 -71490746 - AluJo SINE Alu -15 297 1 581 267 204 55 chr13 30382423 30382462 -71490707 + L2 LINE L2 3281 3313 0 217 214 0 0 chr13 30383066 30383108 -71490061 + (TG)n Simple_repeat Simple_repeat 1 42 0 653 256 14 72 chr13 30383158 30383381 -71489788 + MIR SINE MIR 19 228 -34 1847 185 118 10 chr13 30383680 30384096 -71489073 + LOR1b LTR ERV1 1 461 0 413 235 12 0 chr13 30384261 30384342 -71488827 - MIR SINE MIR -21 241 160 360 242 129 57 chr13 30384397 30384414 -71488755 + MER5A DNA MER1_type 35 49 -140 2351 192 30 13 chr13 30384414 30384873 -71488296 - MLT1C LTR MaLR 0 467 1 360 242 129 57 chr13 30384873 30384979 -71488190 + MER5A DNA MER1_type 49 167 -22 208 374 48 0 chr13 30385273 30385356 -71487813 - L2 LINE L2 -44 3228 3142 2147 114 0 0 chr13 30385381 30385686 -71487483 + AluSg1 SINE Alu 1 305 0 2063 197 50 36 chr13 30386613 30387110 -71486059 - MLT1D LTR MaLR 0 505 2 213 259 0 56 chr13 30387390 30387444 -71485725 + L2 LINE L2 3201 3251 -21 21 0 0 0 chr13 30387445 30387466 -71485703 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 30388075 30388097 -71485072 + AT_rich Low_complexity Low_complexity 1 22 0 4438 136 115 98 chr13 30388809 30390168 -71483001 + pTR5 LTR ERV1 743 2295 -143 3135 122 8 12 chr13 30390971 30391470 -71481699 - LOR1a LTR ERV1 0 497 1 1884 142 112 45 chr13 30391497 30391656 -71481513 + MSTA LTR MaLR 1 148 -280 2258 119 0 0 chr13 30391656 30391958 -71481211 + AluSx SINE Alu 2 303 -9 1884 142 112 45 chr13 30391958 30392199 -71480970 + MSTA LTR MaLR 148 428 0 425 281 53 9 chr13 30393057 30393171 -71479998 + MER5B DNA MER1_type 33 151 -27 328 316 53 0 chr13 30394965 30395098 -71478071 + MIR SINE MIR 115 254 -8 365 262 187 13 chr13 30395247 30395472 -71477697 - L2 LINE L2 -217 3096 2833 275 244 195 0 chr13 30395499 30395581 -71477588 + MER5A DNA MER1_type 9 106 -83 278 374 10 10 chr13 30395644 30395743 -71477426 - L2 LINE L2 -557 2757 2659 2324 88 0 16 chr13 30398181 30398487 -71474682 + AluY SINE Alu 1 301 -10 295 343 76 0 chr13 30398724 30398829 -71474340 + L2 LINE L2 3192 3304 -9 2094 96 4 0 chr13 30398930 30399240 -71473929 + AluSx SINE Alu 1 311 0 189 315 0 67 chr13 30399358 30399447 -71473722 + L2 LINE L2 3231 3313 0 412 308 54 57 chr13 30399843 30400177 -71472992 + MLT1J LTR MaLR 140 472 -39 1470 88 83 0 chr13 30400970 30401187 -71471982 - LTR12 LTR ERV1 0 714 480 281 253 11 0 chr13 30401187 30401282 -71471887 - LTR30 LTR ERV1 -79 643 548 1798 146 87 65 chr13 30401286 30401826 -71471343 - pTR5 LTR ERV1 -437 1683 34 246 247 82 0 chr13 30402161 30402246 -71470923 - MIR SINE MIR -86 176 85 453 224 56 7 chr13 30402406 30402549 -71470620 - pTR5 LTR ERV1 -1240 1198 1049 543 181 62 62 chr13 30402554 30402714 -71470455 - pTR5 LTR ERV1 -1536 902 743 333 0 0 0 chr13 30403319 30403356 -71469813 + (TG)n Simple_repeat Simple_repeat 2 38 0 235 208 0 21 chr13 30403369 30403417 -71469752 - MER2 DNA MER2_type -14 331 285 474 191 11 0 chr13 30403440 30403529 -71469640 - MER2 DNA MER2_type -246 99 10 22 0 0 0 chr13 30403621 30403643 -71469526 + AT_rich Low_complexity Low_complexity 1 22 0 2143 29 0 0 chr13 30403758 30404024 -71469145 - L1PA2 LINE L1 -965 5181 4913 7896 12 0 0 chr13 30404024 30404993 -71468176 + L1PA2 LINE L1 5185 6153 -2 27 49 0 0 chr13 30406750 30406791 -71466378 + AT_rich Low_complexity Low_complexity 1 41 0 331 270 0 0 chr13 30406793 30406867 -71466302 - MIR3 SINE MIR -30 178 105 183 42 0 0 chr13 30407421 30407445 -71465724 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 313 246 187 8 chr13 30408260 30408394 -71464775 - MIR SINE MIR -56 206 49 2219 113 0 0 chr13 30411405 30411696 -71461473 + AluSq SINE Alu 2 292 -21 458 250 10 0 chr13 30411752 30411852 -71461317 + MER5A DNA MER1_type 9 109 -80 309 243 0 0 chr13 30412346 30412416 -71460753 - Charlie8 DNA MER1_type -2199 218 149 2346 95 0 0 chr13 30412418 30412714 -71460455 - AluY SINE Alu -15 296 1 188 347 107 0 chr13 30412943 30413018 -71460151 - MIR3 SINE MIR -41 167 85 528 16 0 0 chr13 30413846 30413907 -71459262 + (TAAAA)n Simple_repeat Simple_repeat 1 61 0 5236 134 14 27 chr13 30414275 30414766 -71458403 + L1PA16 LINE L1 4996 5492 -674 2205 109 10 0 chr13 30414766 30415068 -71458101 + AluSq SINE Alu 1 305 -8 5236 134 14 27 chr13 30415068 30415755 -71457414 + L1PA16 LINE L1 5492 6163 -3 2160 136 0 0 chr13 30415755 30416065 -71457104 + AluY SINE Alu 1 310 -1 225 187 91 18 chr13 30416097 30416158 -71457011 + MIR SINE MIR 84 142 -66 266 270 20 40 chr13 30416834 30416934 -71456235 - MIR SINE MIR 0 262 165 649 220 107 0 chr13 30416969 30417128 -71456041 - MIR SINE MIR -86 176 1 1916 115 0 0 chr13 30417913 30418166 -71455003 - AluSq SINE Alu -60 253 1 26 30 0 0 chr13 30419082 30419115 -71454054 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr13 30419250 30419284 -71453885 + AT_rich Low_complexity Low_complexity 1 34 0 252 203 34 0 chr13 30419319 30419378 -71453791 + GA-rich Low_complexity Low_complexity 3 63 0 95 39 0 0 chr13 30419525 30419655 -71453514 + AT_rich Low_complexity Low_complexity 1 130 0 357 319 140 22 chr13 30421244 30421262 -71451907 + MIR SINE MIR 6 20 -242 340 105 0 0 chr13 30421262 30421319 -71451850 + L1PA6 LINE L1 6098 6154 0 357 319 140 22 chr13 30421319 30421529 -71451640 + MIR SINE MIR 20 261 -1 1499 195 81 24 chr13 30421532 30421901 -71451268 + MLT1B LTR MaLR 1 390 0 859 340 42 15 chr13 30422191 30422665 -71450504 + MLT1J LTR MaLR 5 491 -20 242 235 37 37 chr13 30422954 30423035 -71450134 + LTR16C LTR ERVL 309 389 -102 2000 198 22 17 chr13 30425787 30426197 -71446972 + MLT2C2 LTR ERVL 1 412 -52 220 329 29 0 chr13 30426261 30426331 -71446838 - MIR SINE MIR -3 259 188 23 0 0 0 chr13 30426649 30426672 -71446497 + AT_rich Low_complexity Low_complexity 1 23 0 238 241 0 0 chr13 30427142 30427196 -71445973 + (CAA)n Simple_repeat Simple_repeat 3 56 0 2296 120 0 9 chr13 30427404 30427720 -71445449 - AluSq SINE Alu 0 313 1 729 274 62 11 chr13 30427756 30428113 -71445056 + L1ME4a LINE L1 5510 5884 -237 269 350 31 0 chr13 30428145 30428242 -71444927 + MIR3 SINE MIR 85 184 -24 1751 180 10 43 chr13 30428578 30428973 -71444196 - MLT2C1 LTR ERVL 0 397 16 275 305 0 73 chr13 30430177 30430341 -71442828 - MLT1K LTR MaLR 0 588 437 405 0 0 0 chr13 30431020 30431065 -71442104 + (TG)n Simple_repeat Simple_repeat 1 45 0 283 326 76 7 chr13 30431353 30431497 -71441672 - MIR3 SINE MIR -3 205 52 1345 150 65 20 chr13 30431681 30431928 -71441241 + MER1B DNA MER1_type 1 258 -81 310 273 98 100 chr13 30433062 30433421 -71439748 + L1M2 LINE L1 652 1009 -5840 6463 123 40 20 chr13 30433918 30435071 -71438098 + Tigger3b DNA MER2_type 54 1229 -2 198 0 0 0 chr13 30435097 30435119 -71438050 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 2053 140 0 0 chr13 30435119 30435398 -71437771 - AluSx SINE Alu -33 279 1 528 244 90 26 chr13 30435455 30435611 -71437558 + MIR SINE MIR 19 184 -78 2485 197 117 24 chr13 30436159 30437020 -71436149 - LTR28 LTR ERV1 0 1020 3 313 250 46 0 chr13 30438375 30438483 -71434686 + MER103 DNA DNA 17 129 -37 212 299 0 46 chr13 30439071 30439158 -71434011 + MER5A DNA MER1_type 18 100 -89 23 0 0 0 chr13 30439394 30439417 -71433752 + AT_rich Low_complexity Low_complexity 1 23 0 661 285 22 0 chr13 30440312 30440491 -71432678 - MER5A DNA MER1_type -1 188 6 473 260 39 0 chr13 30440582 30440709 -71432460 - Charlie8 DNA MER1_type -2253 164 33 204 354 0 15 chr13 30441244 30441309 -71431860 - MER5B DNA MER1_type -27 151 88 301 300 0 69 chr13 30442040 30442170 -71430999 + MIR SINE MIR 71 191 -71 914 192 13 57 chr13 30442301 30442530 -71430639 - MER20 DNA MER1_type 0 219 1 198 235 0 0 chr13 30444042 30444076 -71429093 + L2 LINE L2 434 467 -2847 2056 149 0 0 chr13 30444920 30445229 -71427940 + AluSx SINE Alu 1 309 -3 243 297 7 65 chr13 30445424 30445562 -71427607 - MIR3 SINE MIR 0 208 79 1457 226 63 29 chr13 30445578 30446025 -71427144 - LTR40b LTR ERVL 0 462 1 547 259 21 0 chr13 30446032 30446175 -71426994 - HERVL40 LTR ERVL -8 5522 5377 317 268 121 42 chr13 30446502 30446676 -71426493 + MLT1J2 LTR MaLR 135 335 -115 1971 204 56 45 chr13 30446676 30446718 -71426451 - MLT2B1 LTR ERVL 0 520 480 801 90 15 8 chr13 30446718 30446852 -71426317 + (TAGA)n Simple_repeat Simple_repeat 2 136 0 1971 204 56 45 chr13 30446852 30447323 -71425846 - MLT2B1 LTR ERVL -40 480 1 317 268 121 42 chr13 30447323 30447387 -71425782 + MLT1J2 LTR MaLR 335 392 -58 330 316 6 17 chr13 30447512 30447686 -71425483 + L1ME3A LINE L1 5768 5939 -231 260 53 26 0 chr13 30447892 30447930 -71425239 + (TA)n Simple_repeat Simple_repeat 2 40 0 9535 90 4 0 chr13 30448816 30450149 -71423020 + L1PA7 LINE L1 3229 4566 -1580 6881 62 2 6 chr13 30450149 30451044 -71422125 + L1PA7 LINE L1 5261 6154 0 1843 160 3 10 chr13 30451106 30451406 -71421763 + AluJo SINE Alu 1 298 -14 2173 130 39 33 chr13 30452436 30452798 -71420371 + THE1B LTR MaLR 1 364 0 365 343 28 28 chr13 30452846 30452989 -71420180 + L2 LINE L2 2943 3085 -187 1072 207 32 0 chr13 30454754 30454971 -71418198 - MER58A DNA MER1_type 0 224 1 1934 248 18 2 chr13 30455369 30455813 -71417356 + MER74C LTR ERVL 10 460 0 454 309 29 43 chr13 30456809 30456866 -71416303 + MIR SINE MIR 56 112 -150 1571 196 83 0 chr13 30456866 30457202 -71415967 + MLT1A1 LTR MaLR 2 365 0 454 309 29 43 chr13 30457202 30457354 -71415815 + MIR SINE MIR 112 262 0 203 162 0 27 chr13 30458151 30458188 -71414981 + GA-rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 30458202 30458226 -71414943 + AT_rich Low_complexity Low_complexity 1 24 0 404 210 42 17 chr13 30458961 30459080 -71414089 - L1ME4a LINE L1 -264 5857 5736 277 296 46 0 chr13 30459394 30459502 -71413667 + L1MC4 LINE L1 7188 7300 -742 1012 320 44 35 chr13 30459629 30460187 -71412982 + L1M3d LINE L1 1 511 -5380 6299 190 27 16 chr13 30460195 30462362 -71410807 + L1MB1 LINE L1 3973 6168 0 336 202 119 9 chr13 30462394 30462503 -71410666 - MLT1I LTR MaLR -8 401 281 721 293 61 51 chr13 30462770 30463341 -71409828 + L1MC4 LINE L1 7440 8016 -26 3167 121 15 4 chr13 30463706 30464181 -71408988 + MER1A DNA MER1_type 1 528 -1 220 224 0 0 chr13 30464978 30465027 -71408142 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 194 152 0 22 chr13 30466265 30466311 -71406858 + (TA)n Simple_repeat Simple_repeat 2 46 0 306 306 16 50 chr13 30467478 30467599 -71405570 + L2 LINE L2 3146 3262 -10 1156 228 19 29 chr13 30469456 30469589 -71403580 - MER2 DNA MER2_type 0 345 212 1253 186 15 0 chr13 30469589 30469852 -71403317 + L1MA4 LINE L1 6028 6294 -6 1156 228 19 29 chr13 30469852 30470025 -71403144 - MER2 DNA MER2_type -133 212 42 235 211 0 18 chr13 30470054 30470111 -71403058 - MER112 DNA MER1_type -204 56 1 198 360 0 0 chr13 30470611 30470686 -71402483 + L2 LINE L2 3239 3313 0 283 339 8 8 chr13 30470870 30470988 -71402181 + MER117 DNA MER1_type 1 118 -79 22 0 0 0 chr13 30472095 30472117 -71401052 + AT_rich Low_complexity Low_complexity 1 22 0 979 203 51 18 chr13 30472651 30472868 -71400301 - MER58A DNA MER1_type 0 224 1 452 286 109 24 chr13 30473041 30473251 -71399918 + MIR SINE MIR 9 236 -26 1072 264 33 6 chr13 30473264 30473597 -71399572 + HAL1b LINE L1 296 637 -711 263 284 39 65 chr13 30473755 30473910 -71399259 + MLT1J1 LTR MaLR 18 168 -278 198 233 0 23 chr13 30474822 30474865 -71398304 - MIR3 SINE MIR -23 185 144 240 280 161 0 chr13 30477790 30477908 -71395261 - MIR SINE MIR -50 212 76 586 302 149 0 chr13 30479006 30479228 -71393941 - MIR SINE MIR 0 262 8 240 211 0 0 chr13 30479259 30479335 -71393834 + GA-rich Low_complexity Low_complexity 1 76 0 3691 221 60 57 chr13 30479407 30480629 -71392540 + MER69B DNA AcHobo 2 1226 0 429 294 81 54 chr13 30481661 30481882 -71391287 - MIR SINE MIR -22 240 14 336 359 113 37 chr13 30483110 30483703 -71389466 + L2 LINE L2 2293 2930 -384 682 215 14 7 chr13 30483735 30483879 -71389290 + MER5A DNA MER1_type 45 189 0 252 386 28 88 chr13 30483880 30484131 -71389038 + L2 LINE L2 2985 3220 -52 792 295 49 16 chr13 30484139 30484383 -71388786 - MIR SINE MIR 0 262 11 1244 168 7 91 chr13 30484956 30485230 -71387939 + MLT1B LTR MaLR 66 316 -74 1713 171 51 21 chr13 30485264 30485598 -71387571 + MER2 DNA MER2_type 1 344 0 2970 174 50 84 chr13 30487452 30488206 -71384963 - MER44D DNA MER2_type -3 602 2 528 16 0 0 chr13 30488207 30488268 -71384901 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 225 0 113 chr13 30488285 30488356 -71384813 - MIR SINE MIR -79 183 121 197 361 28 49 chr13 30488500 30488683 -71384486 + MER5A DNA MER1_type 14 154 -35 390 323 19 32 chr13 30488525 30488565 -71384604 - MER5B DNA MER1_type -25 153 114 339 25 0 0 chr13 30488565 30488605 -71384564 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 390 323 19 32 chr13 30488605 30488719 -71384450 - MER5B DNA MER1_type -64 114 1 26 30 0 0 chr13 30490288 30490321 -71382848 + AT_rich Low_complexity Low_complexity 1 33 0 526 293 126 75 chr13 30490619 30491056 -71382113 - L2 LINE L2 -1 3271 2813 591 240 79 17 chr13 30492042 30492221 -71380948 - MLT1K LTR MaLR -125 490 275 640 242 195 0 chr13 30492225 30492440 -71380729 - MIR SINE MIR -1 261 5 954 284 73 24 chr13 30492779 30493191 -71379978 - L2 LINE L2 -54 3259 2828 275 315 151 42 chr13 30493317 30493727 -71379442 + L2 LINE L2 2319 2773 -541 403 303 79 24 chr13 30494069 30494234 -71378935 + L2 LINE L2 2350 2523 -791 1672 232 63 8 chr13 30494234 30494726 -71378443 - LTR53 LTR ERVL 0 519 1 5885 230 20 8 chr13 30494950 30496195 -71376974 - HERVL74 LTR ERVL -2335 3350 2091 4584 207 39 21 chr13 30496356 30497395 -71375774 - HERVL74 LTR ERVL -3593 2092 1036 673 204 90 12 chr13 30497473 30497640 -71375529 - HERVL74 LTR ERVL -2587 969 790 281 236 14 0 chr13 30497728 30497800 -71375369 + tRNA-Met-i tRNA tRNA 1 73 -2 1287 242 101 31 chr13 30498041 30498517 -71374652 - LTR53 LTR ERVL 0 519 11 703 315 137 24 chr13 30498522 30499227 -71373942 + L2 LINE L2 2519 3308 -5 691 239 20 65 chr13 30499530 30499731 -71373438 - MIR SINE MIR -23 239 48 210 156 0 0 chr13 30499754 30499799 -71373370 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 1606 156 45 39 chr13 30499800 30500133 -71373036 - MLT2C1 LTR ERVL -62 335 1 748 357 124 30 chr13 30501321 30502124 -71371045 - L2 LINE L2 -35 3278 2377 2493 78 0 0 chr13 30502911 30503219 -71369950 + AluY SINE Alu 1 308 -3 257 103 59 0 chr13 30503800 30503868 -71369301 + (TA)n Simple_repeat Simple_repeat 2 73 0 316 273 166 33 chr13 30505027 30505200 -71367969 - MLT1J1 LTR MaLR -2 407 232 362 181 8 134 chr13 30505208 30505299 -71367870 - MLT1I LTR MaLR -253 156 84 2598 104 6 6 chr13 30505299 30505663 -71367506 - THE1B LTR MaLR 0 364 1 362 181 8 134 chr13 30505663 30505698 -71367471 - MLT1I LTR MaLR -325 84 46 2183 118 6 10 chr13 30506845 30507158 -71366011 - AluSx SINE Alu 0 312 1 181 366 84 0 chr13 30509089 30509160 -71364009 - L2 LINE L2 -69 3203 3127 232 391 53 0 chr13 30509271 30509404 -71363765 - L2 LINE L2 -224 3048 2909 352 211 119 0 chr13 30509700 30509809 -71363360 - MIR SINE MIR -4 258 137 204 261 109 11 chr13 30510033 30510125 -71363044 - MIR SINE MIR -56 206 106 * 668 309 5 5 chr13 30510102 30510325 -71362844 - L2 LINE L2 -554 2760 2538 470 276 130 60 chr13 30510480 30510864 -71362305 + L2 LINE L2 2885 3295 -18 182 336 133 0 chr13 30511397 30511525 -71361644 - MIR SINE MIR -111 151 7 414 220 0 0 chr13 30512279 30512379 -71360790 + (TG)n Simple_repeat Simple_repeat 2 101 0 337 303 0 0 chr13 30512392 30512481 -71360688 - L1MC4 LINE L1 -1340 6702 6614 186 133 0 0 chr13 30512484 30512514 -71360655 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 245 130 0 0 chr13 30512530 30512576 -71360593 + LTR66 LTR ERVL 394 439 -171 483 63 0 0 chr13 30512576 30512639 -71360530 + (TA)n Simple_repeat Simple_repeat 2 64 0 2005 170 9 3 chr13 30513846 30514188 -71358981 - MER2 DNA MER2_type 0 344 1 4249 19 0 0 chr13 30514589 30515075 -71358094 - L1PA3 LINE L1 -4 6151 5666 323 22 0 0 chr13 30515075 30515120 -71358049 + L1P LINE L1 3056 3100 -3046 427 228 118 0 chr13 30518297 30518424 -71354745 - MER69 DNA AcHobo -3 2523 2382 316 278 23 92 chr13 30619858 30620031 -71253138 - L1 LINE L1 -1083 5063 4903 813 167 0 8 chr13 30620752 30620884 -71252285 - FLAM_A SINE Alu -2 140 10 2219 87 0 3 chr13 30621338 30621627 -71251542 - AluSg SINE Alu -22 288 1 399 289 69 17 chr13 30621767 30621940 -71251229 - MER106A DNA MER1_type -54 182 1 2385 64 3 3 chr13 30622374 30622672 -71250497 + AluY SINE Alu 6 303 -8 801 283 20 20 chr13 30623523 30623774 -71249395 + MIR SINE MIR 2 252 -10 1643 113 0 4 chr13 30623909 30624148 -71249021 + AluSc SINE Alu 72 309 0 2327 96 7 0 chr13 30624792 30625093 -71248076 + AluSx SINE Alu 1 303 -9 192 186 23 47 chr13 30625174 30625217 -71247952 - L2 LINE L2 -5 3267 3226 446 173 0 0 chr13 30625217 30625292 -71247877 - MER46C DNA MER2_type -184 154 80 208 329 215 7 chr13 30625549 30626097 -71247072 - L2 LINE L2 -649 2665 2004 367 354 61 18 chr13 30626180 30626460 -71246709 - L2 LINE L2 -2050 1264 973 2237 85 0 14 chr13 30626596 30626914 -71246255 + AluSx SINE Alu 1 312 0 183 291 23 81 chr13 30627157 30627243 -71245926 + MIR3 SINE MIR 12 92 -116 591 245 60 0 chr13 30627264 30627415 -71245754 - MIR SINE MIR -2 260 101 641 308 62 42 chr13 30630046 30630464 -71242705 - HAL1b LINE L1 -725 623 190 2371 85 0 3 chr13 30630464 30630758 -71242411 - AluSg SINE Alu -17 293 1 641 308 62 42 chr13 30630758 30630891 -71242278 - HAL1b LINE L1 -1158 190 61 434 286 145 39 chr13 30631489 30631800 -71241369 - L2 LINE L2 0 3272 2929 28 0 0 0 chr13 30632101 30632129 -71241040 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr13 30632878 30632907 -71240262 + AT_rich Low_complexity Low_complexity 1 29 0 186 320 53 0 chr13 30633535 30633610 -71239559 + L2 LINE L2 3168 3246 -67 470 286 91 0 chr13 30633639 30633793 -71239376 + MIR SINE MIR 43 210 -52 250 182 78 39 chr13 30634054 30634131 -71239038 - MER91C DNA MER1_type -37 103 24 655 221 64 85 chr13 30634400 30634589 -71238580 + L2 LINE L2 3029 3212 -101 2391 86 0 0 chr13 30634589 30634891 -71238278 - AluY SINE Alu -9 302 1 655 221 64 85 chr13 30634891 30634982 -71238187 + L2 LINE L2 3212 3303 -10 489 333 183 31 chr13 30635060 30636090 -71237079 + L2 LINE L2 1995 3180 -92 213 298 167 9 chr13 30636322 30636436 -71236733 + MIR3 SINE MIR 41 172 -36 1452 204 40 13 chr13 30636584 30636883 -71236286 - AluJo SINE Alu -5 307 1 221 175 0 0 chr13 30637240 30637280 -71235889 + L2 LINE L2 3271 3310 -3 459 164 67 39 chr13 30637975 30638079 -71235090 + AluSg SINE Alu 2 108 -202 249 271 17 0 chr13 30638227 30638286 -71234883 - MER106A DNA MER1_type -176 60 1 1987 174 34 9 chr13 30638296 30638623 -71234546 + MER1B DNA MER1_type 3 337 0 2299 99 3 7 chr13 30638852 30639154 -71234015 + AluSp SINE Alu 1 301 -12 2045 145 0 3 chr13 30639165 30639462 -71233707 + AluSx SINE Alu 1 296 -16 2428 69 0 10 chr13 30639699 30640002 -71233167 + AluY SINE Alu 1 300 -11 481 248 0 39 chr13 30640700 30640829 -71232340 + MER94 DNA DNA 10 133 -1 2177 116 7 0 chr13 30641755 30642056 -71231113 + AluSx SINE Alu 1 303 -9 289 256 13 13 chr13 30642169 30642247 -71230922 + L2 LINE L2 3193 3270 -2 867 286 71 19 chr13 30642257 30642582 -71230587 + HAL1 LINE L1 1441 1782 -725 252 246 0 15 chr13 30642962 30643027 -71230142 + HAL1 LINE L1 2077 2140 -367 2259 102 7 3 chr13 30643072 30643376 -71229793 + AluSc SINE Alu 1 305 -4 446 120 13 0 chr13 30643376 30643451 -71229718 + (GA)n Simple_repeat Simple_repeat 1 76 0 493 202 0 11 chr13 30643533 30643622 -71229547 + FRAM SINE Alu 72 159 -17 920 139 21 0 chr13 30644651 30644795 -71228374 + AluSq/x SINE Alu 1 147 -166 306 119 0 0 chr13 30644795 30644837 -71228332 + AluY SINE Alu 208 249 -52 1152 149 0 70 chr13 30644837 30645065 -71228104 + AluSg/x SINE Alu 85 296 -16 192 97 0 0 chr13 30645068 30645099 -71228070 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 185 359 51 0 chr13 30645224 30645302 -71227867 + L2 LINE L2 2433 2514 -800 180 0 0 0 chr13 30645403 30645423 -71227746 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 394 96 0 0 chr13 30645433 30645485 -71227684 - MER66B LTR ERV1 -140 346 295 2435 56 0 13 chr13 30645856 30646161 -71227008 + AluY SINE Alu 1 301 -10 1613 80 0 9 chr13 30646295 30646508 -71226661 + AluY SINE Alu 1 211 -100 2365 83 10 0 chr13 30647280 30647580 -71225589 - AluY SINE Alu -8 303 1 2200 110 3 3 chr13 30647741 30648049 -71225120 - AluY SINE Alu -3 308 1 1288 183 7 129 chr13 30648050 30648330 -71224839 - L1MC5 LINE L1 -985 6976 6760 2467 75 0 0 chr13 30648330 30648636 -71224533 - AluSg SINE Alu -2 308 3 1288 183 7 129 chr13 30648636 30648766 -71224403 - L1MC5 LINE L1 -1201 6760 6616 2473 90 3 0 chr13 30649356 30649667 -71223502 + AluSp SINE Alu 1 312 -1 2258 91 0 3 chr13 30649973 30650259 -71222910 + AluSg SINE Alu 5 289 -21 14309 136 35 7 chr13 30650284 30652602 -71220567 + L1M1 LINE L1 1252 3635 -3930 2127 108 0 3 chr13 30652602 30652889 -71220280 + AluSc SINE Alu 1 286 -23 1077 168 17 0 chr13 30652890 30653069 -71220100 - Tigger1 DNA MER2_type -2236 182 1 201 181 14 28 chr13 30653085 30653157 -71220012 + (TA)n Simple_repeat Simple_repeat 1 71 0 1069 83 117 0 chr13 30653259 30653404 -71219765 - AluY SINE Alu -149 162 1 253 171 86 43 chr13 30654463 30654533 -71218636 - L1MC5 LINE L1 -45 7916 7844 594 181 47 18 chr13 30654546 30654717 -71218452 - L1MC5 LINE L1 -170 7791 7616 2025 64 45 19 chr13 30654719 30654984 -71218185 - AluY SINE Alu -7 304 33 2395 64 7 3 chr13 30654987 30655284 -71217885 - AluSg SINE Alu -12 298 1 2375 72 3 3 chr13 30655317 30655610 -71217559 - AluY SINE Alu -18 293 1 203 270 325 8 chr13 30655998 30656124 -71217045 - MIR SINE MIR -18 244 79 2464 82 0 0 chr13 30656618 30656921 -71216248 + AluSc SINE Alu 1 303 -6 566 323 108 35 chr13 30657285 30657712 -71215457 + L2 LINE L2 2308 2765 -549 531 309 75 41 chr13 30657827 30658122 -71215047 + L2 LINE L2 3005 3309 -4 21 57 0 0 chr13 30658193 30658228 -71214941 + AT_rich Low_complexity Low_complexity 1 35 0 213 230 60 80 chr13 30658256 30658356 -71214813 + L2 LINE L2 2307 2404 -910 1620 186 14 14 chr13 30658509 30658804 -71214365 + AluJo SINE Alu 5 299 -13 1878 154 0 0 chr13 30659445 30659724 -71213445 - AluSg SINE Alu -31 279 1 192 152 0 0 chr13 30659989 30660022 -71213147 + A-rich Low_complexity Low_complexity 3 35 0 1732 194 0 0 chr13 30712143 30712426 -71160743 + AluJb SINE Alu 3 285 -27 7123 64 9 29 chr13 30712609 30713734 -71159435 + L1PA7 LINE L1 5047 6152 -2 274 131 91 30 chr13 30713752 30713851 -71159318 + Charlie5 DNA MER1_type 2424 2528 -84 446 261 90 22 chr13 30713900 30714078 -71159091 - MIR SINE MIR -31 231 38 286 342 89 6 chr13 30714110 30714268 -71158901 + MER5A DNA MER1_type 8 178 -11 260 298 193 6 chr13 30715876 30716037 -71157132 - MIR SINE MIR -8 254 64 204 350 17 0 chr13 30717923 30717979 -71155190 + L3 LINE CR1 1257 1313 -264 374 232 219 26 chr13 30717979 30718134 -71155035 - MER5A DNA MER1_type -1 188 4 408 285 91 21 chr13 30718290 30718476 -71154693 + MIR SINE MIR 58 256 -6 259 236 163 41 chr13 30718810 30718933 -71154236 - MIR SINE MIR -46 216 79 352 276 0 0 chr13 30719113 30719189 -71153980 - MIR3 SINE MIR -46 162 87 188 262 0 0 chr13 30720115 30720157 -71153012 - L3 LINE CR1 -5 1572 1531 24 0 0 0 chr13 30722375 30722399 -71150770 + AT_rich Low_complexity Low_complexity 1 24 0 1965 154 10 10 chr13 30722404 30722716 -71150453 - 7SLRNA srpRNA srpRNA -4 316 5 296 297 211 27 chr13 30722817 30723002 -71150167 - MIR SINE MIR -12 250 32 449 339 28 6 chr13 30725581 30725822 -71147347 + MIR3 SINE MIR 14 259 -3 460 248 0 0 chr13 30725938 30726043 -71147126 + L1MA10 LINE L1 6230 6334 0 185 423 58 13 chr13 30726786 30726942 -71146227 - L2 LINE L2 -181 3091 2929 921 254 85 72 chr13 30727101 30727503 -71145666 - MLT1I LTR MaLR 0 409 3 198 103 0 0 chr13 30729197 30729226 -71143943 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 28 0 0 0 chr13 30730173 30730201 -71142968 + AT_rich Low_complexity Low_complexity 1 28 0 304 292 18 35 chr13 30732853 30732887 -71140282 - L2 LINE L2 -622 2692 2659 2481 112 22 30 chr13 30732887 30733254 -71139915 - THE1B LTR MaLR 0 364 1 304 292 18 35 chr13 30733254 30733332 -71139837 - L2 LINE L2 -655 2659 2582 431 266 18 18 chr13 30733621 30733730 -71139439 + L2 LINE L2 3205 3313 0 2457 181 27 61 chr13 30733835 30734392 -71138777 + MLT2B3 LTR ERVL 17 554 0 236 200 12 82 chr13 30734394 30734479 -71138690 - L2 LINE L2 -1499 1815 1737 917 280 64 32 chr13 30734657 30735000 -71138169 - LTR33 LTR ERVL -145 376 23 435 292 33 8 chr13 30735681 30735801 -71137368 - L2 LINE L2 -5 3308 3186 219 339 41 33 chr13 30737433 30737554 -71135615 - L2 LINE L2 0 3272 3151 2571 54 0 0 chr13 30737566 30737861 -71135308 + AluY SINE Alu 1 295 -16 619 250 164 12 chr13 30739266 30739510 -71133659 - MIR SINE MIR 0 262 1 200 267 47 100 chr13 30740945 30741095 -71132074 - MIR SINE MIR -76 186 45 356 261 46 39 chr13 30743378 30743508 -71129661 - MIR SINE MIR -24 238 108 264 380 30 0 chr13 30743633 30743733 -71129436 + MIR SINE MIR 20 122 -140 434 298 7 43 chr13 30744147 30744254 -71128915 + L3 LINE CR1 1384 1486 -91 2546 127 101 0 chr13 30744254 30744641 -71128528 - MSTB LTR MaLR 0 426 1 434 298 7 43 chr13 30744641 30744674 -71128495 + L3 LINE CR1 1486 1519 -58 339 121 0 0 chr13 30745678 30745736 -71127433 + (TG)n Simple_repeat Simple_repeat 2 59 0 305 255 59 39 chr13 30745921 30746023 -71127146 - LTR67 LTR ERVL -367 190 87 307 359 31 66 chr13 30746281 30746462 -71126707 + MIR SINE MIR 6 177 -85 2167 117 3 0 chr13 30746462 30746760 -71126409 + AluSx SINE Alu 1 299 -13 307 359 31 66 chr13 30746760 30746834 -71126335 + MIR SINE MIR 177 252 -10 197 194 0 0 chr13 30746802 30746838 -71126331 + L2 LINE L2 3225 3260 -12 * 247 336 57 16 chr13 30747128 30747250 -71125919 - LTR16A LTR ERVL -323 127 1 397 377 109 25 chr13 30747365 30747731 -71125438 - L2 LINE L2 -6 3307 2911 331 331 99 7 chr13 30747783 30747925 -71125244 - L2 LINE L2 -848 2466 2312 209 129 0 0 chr13 30749687 30749718 -71123451 + MIR SINE MIR 86 116 -146 303 28 0 0 chr13 30750447 30750483 -71122686 + (TC)n Simple_repeat Simple_repeat 2 37 0 257 282 84 0 chr13 30751427 30751498 -71121671 + L2 LINE L2 3237 3313 0 320 265 15 0 chr13 30751708 30751776 -71121393 + MIR SINE MIR 82 150 -58 340 315 175 10 chr13 30751781 30751981 -71121188 - MIR SINE MIR -2 260 28 2162 144 88 0 chr13 30752287 30752662 -71120507 + L1MB2 LINE L1 5732 6139 -32 797 148 128 20 chr13 30752918 30753067 -71120102 - FAM SINE Alu -11 174 10 391 333 41 14 chr13 30753181 30753328 -71119841 + MIR3 SINE MIR 54 204 -4 2524 154 29 2 chr13 30753996 30754412 -71118757 - MSTA LTR MaLR 0 428 2 1169 207 109 8 chr13 30755178 30755475 -71117694 - AluJb SINE Alu 0 326 4 2572 89 46 0 chr13 30755602 30755950 -71117219 - THE1B LTR MaLR 0 364 1 2614 56 0 0 chr13 30756144 30756450 -71116719 - AluY SINE Alu -5 306 1 478 215 93 14 chr13 30758128 30758335 -71114834 - MLT1F1 LTR MaLR 0 595 339 428 298 32 55 chr13 30758439 30758657 -71114512 - MLT1F1 LTR MaLR -275 280 68 550 265 9 18 chr13 30758721 30758944 -71114225 + L1MEc LINE L1 1410 1630 -4766 436 267 111 28 chr13 30759068 30759420 -71113749 + L1ME3A LINE L1 4575 4955 -1191 1783 182 47 21 chr13 30759426 30759806 -71113363 + MLT1B LTR MaLR 1 390 0 1922 206 86 12 chr13 30759806 30760364 -71112805 + MLT1B-int LTR MaLR 1 727 -644 352 244 0 0 chr13 30760473 30760563 -71112606 + MLT1B-int LTR MaLR 681 770 -965 2293 204 24 7 chr13 30760635 30761090 -71112079 + MLT1B-int LTR MaLR 1256 1718 -17 1580 226 46 20 chr13 30761088 30761548 -71111621 + L1ME3A LINE L1 5686 6157 -13 * 241 241 30 45 chr13 30761561 30761694 -71111475 + L1MEc LINE L1 1632 1762 -4634 385 211 36 60 chr13 30762111 30762277 -71110892 + L1MEc LINE L1 2291 2452 -3763 360 169 90 0 chr13 30762276 30762365 -71110804 + L1MB2 LINE L1 6071 6167 -4 * 535 162 12 104 chr13 30762389 30762562 -71110607 + L1MEc LINE L1 2436 2592 -3623 549 309 64 14 chr13 30763138 30763358 -71109811 + MIR SINE MIR 2 232 -30 1688 200 14 27 chr13 30763846 30764216 -71108953 - MLT1A1 LTR MaLR 0 365 1 341 280 121 38 chr13 30766376 30766508 -71106661 + MIR SINE MIR 33 175 -87 2140 118 7 0 chr13 30768007 30768294 -71104875 + AluSx SINE Alu 1 289 -23 517 290 32 0 chr13 30768303 30768458 -71104711 - MIR SINE MIR 0 262 103 751 191 0 0 chr13 30769579 30769710 -71103459 + FLAM_A SINE Alu 1 131 -2 1028 245 98 0 chr13 30769729 30770076 -71103093 + L1ME3 LINE L1 5605 5985 -177 2875 154 55 98 chr13 30770095 30770860 -71102309 - L1MA9 LINE L1 -36 6276 5545 575 265 19 0 chr13 30770862 30771024 -71102145 + L1ME3 LINE L1 5972 6136 -26 2025 146 3 3 chr13 30771034 30771328 -71101841 - AluJb SINE Alu -18 294 1 607 269 66 16 chr13 30771345 30771537 -71101632 + MIR SINE MIR 64 262 0 451 209 12 22 chr13 30772473 30772623 -71100546 + MER3 DNA MER1_type 1 209 0 306 98 0 0 chr13 30772964 30773015 -71100154 + (TC)n Simple_repeat Simple_repeat 1 51 0 980 258 12 12 chr13 30774585 30774833 -71098336 + MIR SINE MIR 5 252 -10 250 270 96 70 chr13 30775169 30775284 -71097885 + L3 LINE CR1 949 1066 -511 1874 283 61 25 chr13 30775376 30775754 -71097415 - L2 LINE L2 -126 3187 2824 1747 259 77 16 chr13 30775754 30776310 -71096859 + MLT1G LTR MaLR 1 590 0 1874 283 61 25 chr13 30776310 30776827 -71096342 - L2 LINE L2 -489 2824 2253 262 324 99 9 chr13 30776822 30776933 -71096236 + L3 LINE CR1 1049 1169 -408 * 411 203 0 0 chr13 30777338 30777417 -71095752 + MLT1A2 LTR MaLR 296 374 0 372 293 124 102 chr13 30778954 30779660 -71093509 + L1M2 LINE L1 607 1332 -5517 372 43 0 0 chr13 30779660 30779706 -71093463 + (CGG)n Simple_repeat Simple_repeat 2 47 0 372 293 124 102 chr13 30779706 30779746 -71093423 + L1M2 LINE L1 1332 1370 -5479 31 0 0 0 chr13 30784524 30784555 -71088614 + AT_rich Low_complexity Low_complexity 1 31 0 2485 80 0 0 chr13 30784666 30784965 -71088204 + AluSg SINE Alu 1 299 -11 1865 144 3 56 chr13 30785135 30785455 -71087714 + AluJo SINE Alu 1 303 -9 2018 134 20 0 chr13 30785778 30786070 -71087099 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr13 30786444 30786470 -71086699 + AT_rich Low_complexity Low_complexity 1 26 0 183 319 184 35 chr13 30786822 30786963 -71086206 + MIR SINE MIR 67 228 -34 281 291 94 26 chr13 30787044 30787161 -71086008 + L2 LINE L2 3139 3263 -9 21 36 0 0 chr13 30787373 30787401 -71085768 + AT_rich Low_complexity Low_complexity 1 28 0 735 308 124 28 chr13 30787499 30787960 -71085209 + MLT1K LTR MaLR 56 560 -28 181 302 81 12 chr13 30789744 30789830 -71083339 - L3 LINE CR1 -518 1059 968 180 336 149 25 chr13 30790095 30790330 -71082839 + L2 LINE L2 2714 2977 -337 378 241 214 9 chr13 30790366 30790478 -71082691 - MER5A DNA MER1_type 0 189 55 198 390 70 0 chr13 30790524 30790624 -71082545 + L2 LINE L2 3008 3114 -199 576 313 69 26 chr13 30790901 30791134 -71082035 + MIR SINE MIR 6 248 -14 23 33 0 0 chr13 30791608 30791638 -71081531 + AT_rich Low_complexity Low_complexity 1 30 0 195 129 0 0 chr13 30791690 30791721 -71081448 + (TA)n Simple_repeat Simple_repeat 1 31 0 780 262 73 13 chr13 30791816 30791878 -71081291 - L1ME LINE L1 -360 5879 5822 1018 257 157 13 chr13 30791878 30792325 -71080844 - MLT1J LTR MaLR 0 511 1 780 262 73 13 chr13 30792325 30792531 -71080638 - L1ME LINE L1 -417 5822 5599 439 264 90 30 chr13 30792798 30792999 -71080170 + MIR SINE MIR 1 213 -49 3072 203 33 37 chr13 30793215 30794101 -71079068 - L1ME2 LINE L1 -21 6143 5262 * 3936 250 50 31 chr13 30794094 30795748 -71077421 - L1ME LINE L1 -789 5426 3742 2238 129 32 45 chr13 30795988 30796368 -71076801 + THE1C LTR MaLR 1 375 0 244 57 0 0 chr13 30796552 30796587 -71076582 - Alu SINE Alu -160 141 107 1177 30 0 0 chr13 30796587 30796721 -71076448 + AluY SINE Alu 159 292 -19 311 292 149 10 chr13 30796804 30796999 -71076170 - L1ME LINE L1 -6077 319 98 500 213 83 30 chr13 30797623 30797859 -71075310 - MLT1H LTR MaLR 0 549 301 296 347 14 61 chr13 30798502 30798641 -71074528 - MIR3 SINE MIR -54 154 20 1547 101 0 10 chr13 30798641 30798872 -71074297 - AluSc SINE Alu 0 310 82 1799 129 0 15 chr13 30800618 30800889 -71072280 + AluSx SINE Alu 28 294 -18 24 0 0 0 chr13 30800969 30800993 -71072176 + AT_rich Low_complexity Low_complexity 1 24 0 1090 258 99 59 chr13 30801220 30802198 -71070971 - L1MEc LINE L1 -3216 2913 1942 493 296 107 19 chr13 30802354 30802833 -71070336 - L1MEc LINE L1 -4581 1729 1209 261 271 30 30 chr13 30802930 30802975 -71070194 - L1MEc LINE L1 -5091 1028 984 332 71 18 0 chr13 30802975 30803031 -71070138 + (TTG)n Simple_repeat Simple_repeat 2 58 0 261 271 30 30 chr13 30803031 30803118 -71070051 - L1MEc LINE L1 -5134 985 896 421 320 19 6 chr13 30804012 30804168 -71069001 - LTR16A1 LTR ERVL -299 158 1 1266 236 98 9 chr13 30804199 30804534 -71068635 + MLT1A1 LTR MaLR 1 365 0 2311 115 0 3 chr13 30804585 30804897 -71068272 - AluSx SINE Alu -1 311 1 1430 119 10 0 chr13 30804957 30805159 -71068010 - LTR12 LTR ERV1 -134 580 377 394 246 41 0 chr13 30805159 30805281 -71067888 - LTR30 LTR ERV1 -79 643 517 1102 78 131 89 chr13 30805281 30805472 -71067697 - LTR12 LTR ERV1 -463 251 53 271 211 0 0 chr13 30805472 30805524 -71067645 - LTR30 LTR ERV1 -670 52 1 458 85 0 0 chr13 30805526 30805585 -71067584 + LTR12 LTR ERV1 656 714 0 252 200 0 0 chr13 30805613 30805668 -71067501 + (CA)n Simple_repeat Simple_repeat 2 56 0 430 341 92 63 chr13 30806782 30807066 -71066103 - L2 LINE L2 0 3272 2981 * 551 338 61 20 chr13 30807049 30807345 -71065824 - L2 LINE L2 -842 2472 2165 2130 117 3 0 chr13 30807418 30807716 -71065453 + AluSx SINE Alu 3 301 -11 2131 103 3 45 chr13 30807727 30808037 -71065132 + AluSq SINE Alu 1 297 -16 253 390 150 4 chr13 30810163 30810409 -71062760 + L2 LINE L2 2987 3268 -4 302 283 0 11 chr13 30811144 30811236 -71061933 + (CA)n Simple_repeat Simple_repeat 2 92 0 311 0 26 0 chr13 30811253 30811292 -71061877 + (TC)n Simple_repeat Simple_repeat 1 40 0 285 75 0 0 chr13 30811291 30811331 -71061838 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 200 277 43 0 chr13 30812494 30812588 -71060581 + (TA)n Simple_repeat Simple_repeat 2 99 0 455 277 185 11 chr13 30813514 30813698 -71059471 - MIR SINE MIR -5 257 42 283 369 60 24 chr13 30813825 30813993 -71059176 + MER5A DNA MER1_type 10 183 -6 262 275 99 0 chr13 30814265 30814356 -71058813 + MARNA DNA Mariner 423 522 -64 24 0 0 0 chr13 30814359 30814383 -71058786 + AT_rich Low_complexity Low_complexity 1 24 0 2694 91 41 0 chr13 30815970 30816311 -71056858 + THE1A LTR MaLR 1 355 0 10199 95 96 1 chr13 30816311 30817754 -71055415 + THE1A-int LTR MaLR 1 1580 0 2755 105 6 0 chr13 30817754 30818107 -71055062 + THE1A LTR MaLR 1 355 0 2103 126 0 0 chr13 30818484 30818770 -71054399 + AluSx SINE Alu 1 286 -26 28 29 0 0 chr13 30818771 30818806 -71054363 + AT_rich Low_complexity Low_complexity 1 35 0 1772 156 0 48 chr13 30819875 30820189 -71052980 + AluJb SINE Alu 9 307 -5 2221 113 0 7 chr13 30820431 30820741 -71052428 + AluSc SINE Alu 1 308 -1 835 161 13 13 chr13 30821807 30822031 -71051138 + GA-rich Low_complexity Low_complexity 1 224 0 284 221 78 13 chr13 30822337 30822414 -71050755 + MLT1G1-int LTR MaLR 5 86 -1285 463 310 94 92 chr13 30823092 30823637 -71049532 + MLT1G1-int LTR MaLR 756 1301 -70 837 259 172 29 chr13 30823718 30824177 -71048992 + MLT1G1 LTR MaLR 20 595 0 360 265 111 39 chr13 30824323 30824504 -71048665 + L2 LINE L2 3104 3297 -16 439 214 11 0 chr13 30824682 30824771 -71048398 + MLT1I LTR MaLR 320 409 0 2801 169 24 2 chr13 30825209 30825666 -71047503 + MLT1C LTR MaLR 1 467 0 394 266 84 37 chr13 30826268 30826482 -71046687 - MARNA DNA Mariner -342 244 21 985 170 0 12 chr13 30826522 30826687 -71046482 - AluJb SINE Alu -13 299 137 256 294 79 40 chr13 30827350 30827476 -71045693 + L2 LINE L2 3141 3271 -1 642 183 19 0 chr13 30827973 30828077 -71045092 + FLAM_A SINE Alu 14 119 -23 689 209 58 17 chr13 30828686 30828858 -71044311 + LTR41 LTR ERVL 1 179 -594 471 208 14 111 chr13 30829090 30829258 -71043911 + LTR41 LTR ERVL 581 727 -46 2289 129 23 12 chr13 30829258 30829600 -71043569 - MER7A DNA MER2_type -1 345 2 471 208 14 111 chr13 30829600 30829638 -71043531 + LTR41 LTR ERVL 727 767 -6 1905 112 11 0 chr13 30829661 30829921 -71043248 - AluSx SINE Alu -1 311 49 2168 112 0 13 chr13 30831998 30832303 -71040866 + AluSx SINE Alu 1 301 -11 334 255 104 19 chr13 30833745 30833851 -71039318 + L2 LINE L2 3153 3267 -5 27 29 0 0 chr13 30834043 30834077 -71039092 + AT_rich Low_complexity Low_complexity 1 34 0 1692 114 9 0 chr13 30834453 30834680 -71038489 - MER30 DNA MER1_type 0 230 2 2265 104 3 3 chr13 30835075 30835382 -71037787 - AluSq SINE Alu -4 309 3 213 39 0 0 chr13 30836957 30836983 -71036186 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1736 221 6 14 chr13 30837451 30837813 -71035356 - L1PB4 LINE L1 -1 6155 5797 331 364 30 20 chr13 30838159 30838357 -71034812 - L2 LINE L2 -243 3029 2830 196 329 40 26 chr13 30838992 30839068 -71034101 + L3b LINE CR1 1420 1496 -87 1277 261 67 8 chr13 30839853 30840244 -71032925 + MLT1C LTR MaLR 54 467 0 2282 98 0 0 chr13 30840496 30840791 -71032378 - AluSx SINE Alu -17 295 1 236 120 20 0 chr13 30841511 30841561 -71031608 + CT-rich Low_complexity Low_complexity 1 51 0 655 248 218 5 chr13 30842844 30843046 -71030123 + MIR SINE MIR 18 262 0 560 316 50 31 chr13 30843262 30843738 -71029431 - L2 LINE L2 -144 3169 2686 1193 230 139 91 chr13 30843743 30844260 -71028909 + MLT1E LTR MaLR 1 542 0 944 291 124 42 chr13 30844260 30844734 -71028435 - L2 LINE L2 -627 2687 2175 821 237 101 18 chr13 30844735 30845169 -71028000 - MLT1G LTR MaLR 0 590 1 1025 298 37 16 chr13 30845171 30845547 -71027622 - L2 LINE L2 -1138 2176 1793 289 322 268 23 chr13 30845611 30845965 -71027204 - L3 LINE CR1 -83 1494 1054 246 32 0 0 chr13 30846735 30846766 -71026403 + (CA)n Simple_repeat Simple_repeat 1 31 0 385 251 69 44 chr13 30847259 30847462 -71025707 + MIR SINE MIR 5 212 -50 505 245 93 65 chr13 30847611 30847933 -71025236 + HAL1 LINE L1 1122 1452 -1055 358 328 74 0 chr13 30848507 30848629 -71024540 + L2 LINE L2 3123 3253 -19 537 223 128 95 chr13 30848705 30848978 -71024191 - MER102b DNA MER1_type -1 340 59 474 221 31 72 chr13 30849571 30849766 -71023403 + HAL1b LINE L1 593 779 -569 21 0 0 0 chr13 30850005 30850026 -71023143 + AT_rich Low_complexity Low_complexity 1 21 0 544 250 12 6 chr13 30850065 30850225 -71022944 + HAL1b LINE L1 1181 1341 -7 1735 142 19 68 chr13 30850374 30850685 -71022484 - AluJo SINE Alu -14 298 3 252 365 79 8 chr13 30851753 30851879 -71021290 + L2 LINE L2 3138 3272 0 465 273 41 17 chr13 30852048 30852383 -71020786 - MLT1L LTR MaLR -31 584 149 313 274 64 129 chr13 30852470 30852942 -71020227 + L2 LINE L2 2786 3227 -45 326 250 0 0 chr13 30853237 30853301 -71019868 - MER81 DNA DNA -36 78 15 828 189 26 37 chr13 30854356 30854546 -71018623 + MIR SINE MIR 31 218 -44 2201 106 0 17 chr13 30854656 30854957 -71018212 + AluSq SINE Alu 1 296 -17 210 357 124 0 chr13 30855231 30855360 -71017809 - L2 LINE L2 -189 3083 2939 501 245 61 74 chr13 30856205 30856667 -71016502 + L1MC5 LINE L1 7452 7907 -54 1824 172 0 22 chr13 30856689 30857003 -71016166 - AluJb SINE Alu -5 307 1 450 0 0 0 chr13 30857768 30857818 -71015351 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 414 0 0 0 chr13 30857817 30857863 -71015306 + (TG)n Simple_repeat Simple_repeat 1 46 0 * 411 306 201 10 chr13 30857961 30858170 -71014999 - MIR SINE MIR -2 260 12 231 250 111 0 chr13 30858302 30858410 -71014759 + L1ME4a LINE L1 6002 6121 0 469 192 128 32 chr13 30859995 30860120 -71013049 + MIR SINE MIR 124 260 -2 339 96 0 0 chr13 30860439 30860491 -71012678 + (CA)n Simple_repeat Simple_repeat 1 52 0 629 287 89 40 chr13 30860666 30861143 -71012026 - L1ME4a LINE L1 -113 6008 5486 2383 93 0 0 chr13 30861143 30861444 -71011725 - AluY SINE Alu -10 301 1 629 287 89 40 chr13 30861444 30861622 -71011547 - L1ME4a LINE L1 -635 5486 5318 2108 132 48 25 chr13 30861677 30862033 -71011136 + THE1B LTR MaLR 1 364 0 11417 93 14 21 chr13 30862033 30863623 -71009546 + THE1B-int LTR MaLR 1 1580 0 2257 121 25 25 chr13 30863623 30863987 -71009182 + THE1B LTR MaLR 1 364 0 273 146 0 0 chr13 30864785 30864833 -71008336 + MLT1F LTR MaLR 2 49 -518 1254 182 121 67 chr13 30864853 30865199 -71007970 - MLT1A1 LTR MaLR 0 365 1 916 227 203 10 chr13 30865204 30865495 -71007674 + MLT1F LTR MaLR 136 482 -60 367 335 77 14 chr13 30865604 30865825 -71007344 + MLT1L LTR MaLR 252 486 -129 1784 235 94 31 chr13 30866574 30867023 -71006146 + L1ME3A LINE L1 5445 5864 -306 452 16 0 32 chr13 30867023 30867085 -71006084 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1760 165 3 21 chr13 30867088 30867379 -71005790 - AluJb SINE Alu -26 286 1 1784 235 94 31 chr13 30867379 30867602 -71005567 + L1ME3A LINE L1 5865 6164 -6 74 12 0 0 chr13 30867632 30867713 -71005456 + AT_rich Low_complexity Low_complexity 1 81 0 435 292 55 32 chr13 30870467 30870665 -71002504 + MIR SINE MIR 1 213 -49 770 284 126 31 chr13 30871158 30871546 -71001623 + L2 LINE L2 2858 3282 -31 2254 232 24 27 chr13 30871820 30872497 -71000672 - L1ME2 LINE L1 -2 6162 5488 2181 130 20 66 chr13 30872775 30873184 -70999985 + MLT1B LTR MaLR 1 390 0 719 301 46 27 chr13 30873552 30874034 -70999135 + L1ME4a LINE L1 5630 6120 -1 21 57 0 0 chr13 30874037 30874072 -70999097 + AT_rich Low_complexity Low_complexity 1 35 0 2589 133 84 80 chr13 30874552 30875065 -70998104 - MLT2B2 LTR ERVL 0 515 1 4218 121 16 14 chr13 30875134 30875829 -70997340 + MER50 LTR ERV1 2 697 -37 658 245 90 138 chr13 30876069 30876648 -70996521 + MLT1G3 LTR MaLR 3 553 -42 27 29 0 0 chr13 30876898 30876932 -70996237 + AT_rich Low_complexity Low_complexity 1 34 0 222 204 0 0 chr13 30877448 30877492 -70995677 + L2 LINE L2 3270 3313 0 342 341 103 1 chr13 30877513 30877673 -70995496 + MIR3 SINE MIR 18 194 -14 * 421 279 49 16 chr13 30877669 30877791 -70995378 + L2 LINE L2 3146 3271 -1 769 177 0 8 chr13 30880265 30880395 -70992774 + FLAM_C SINE Alu 1 129 -4 181 385 36 12 chr13 30880426 30880509 -70992660 + L2 LINE L2 3127 3211 -61 187 364 185 0 chr13 30880726 30880877 -70992292 + MIR SINE MIR 2 180 -82 1335 259 124 19 chr13 30880879 30881361 -70991808 + MLT2E LTR ERVL 1 533 -95 406 272 88 7 chr13 30881394 30881541 -70991628 + MER63A DNA MER1_type 51 209 -1 191 255 0 0 chr13 30881637 30881684 -70991485 + MIR SINE MIR 215 261 -1 31064 23 0 0 chr13 30882472 30887109 -70986060 + L1PA2 LINE L1 1517 6154 -1 245 295 38 19 chr13 30887975 30888080 -70985089 - L2 LINE L2 -511 2803 2697 214 211 0 0 chr13 30888357 30888395 -70984774 - L2 LINE L2 -954 2360 2323 466 355 94 41 chr13 30888443 30889538 -70983631 + L2 LINE L2 2026 3272 0 198 0 0 0 chr13 30890823 30890845 -70982324 + (CA)n Simple_repeat Simple_repeat 2 23 0 207 0 0 0 chr13 30890845 30890868 -70982301 + (TA)n Simple_repeat Simple_repeat 1 23 0 189 339 96 71 chr13 30892568 30892807 -70980362 - L2 LINE L2 -7 3265 3021 196 306 35 12 chr13 30892829 30892914 -70980255 - L2 LINE L2 0 3272 3186 695 284 99 34 chr13 30893115 30894091 -70979078 - L1M4 LINE L1 -758 5388 4349 270 306 106 4 chr13 30894095 30894370 -70978799 - L1MEd LINE L1 -3623 2506 2204 505 244 87 35 chr13 30894512 30894741 -70978428 - MLT1L LTR MaLR -5 610 370 320 202 0 43 chr13 30895163 30895257 -70977912 - L1MC4 LINE L1 -1339 6703 6614 254 182 0 0 chr13 30895203 30895269 -70977900 + L1MC4 LINE L1 6636 6701 -1341 * 333 0 0 0 chr13 30895269 30895306 -70977863 + (GA)n Simple_repeat Simple_repeat 2 38 0 2186 102 46 0 chr13 30895814 30896099 -70977070 + AluSq SINE Alu 1 298 -15 213 65 0 0 chr13 30896115 30896146 -70977023 + (CATA)n Simple_repeat Simple_repeat 2 32 0 240 286 62 49 chr13 30896148 30896372 -70976797 - HAL1 LINE L1 -898 1609 1383 255 319 37 22 chr13 30896434 30896569 -70976600 - L1MEd LINE L1 -5503 616 480 557 311 145 20 chr13 30897424 30898284 -70974885 + L1MC4a LINE L1 4903 5724 -397 282 299 0 0 chr13 30898349 30898416 -70974753 + (TG)n Simple_repeat Simple_repeat 2 68 0 30 45 0 0 chr13 30898529 30898573 -70974596 + AT_rich Low_complexity Low_complexity 1 44 0 187 333 13 27 chr13 30898853 30898928 -70974241 + L2 LINE L2 2937 3010 -262 286 228 81 40 chr13 30899496 30899645 -70973524 + MER103 DNA DNA 3 157 -9 2817 128 24 13 chr13 30899649 30900111 -70973058 - MLT1C LTR MaLR 0 467 1 205 254 228 9 chr13 30900264 30900378 -70972791 - MIR SINE MIR -88 174 36 182 322 115 23 chr13 30902579 30902666 -70970503 + L2 LINE L2 3211 3305 -8 2564 128 61 10 chr13 30902861 30903268 -70969901 + MSTA LTR MaLR 1 428 0 926 234 99 13 chr13 30904570 30904813 -70968356 - MIR SINE MIR -13 249 3 561 214 22 72 chr13 30905804 30906000 -70967169 + MIR SINE MIR 3 190 -62 334 253 243 13 chr13 30906336 30906534 -70966635 - MIR SINE MIR 0 262 3 260 385 32 6 chr13 30907574 30907730 -70965439 + MIR SINE MIR 23 182 -80 810 177 15 8 chr13 30907839 30907969 -70965200 + FRAM SINE Alu 1 131 -45 533 210 133 0 chr13 30908413 30908556 -70964613 - MER117 DNA MER1_type 0 197 36 555 301 57 16 chr13 30909210 30909403 -70963766 - MIR SINE MIR -54 208 8 319 288 253 11 chr13 30909714 30909999 -70963170 + L2 LINE L2 2489 2842 -472 304 357 13 6 chr13 30910001 30910158 -70963011 + L2 LINE L2 3156 3313 0 269 376 40 8 chr13 30910373 30910498 -70962671 - L2 LINE L2 0 3272 3144 292 302 107 62 chr13 30910773 30910998 -70962171 - L2 LINE L2 -474 2840 2606 262 274 94 66 chr13 30912701 30912913 -70960256 + MIR SINE MIR 32 249 -13 285 372 44 7 chr13 30913277 30913414 -70959755 + L2 LINE L2 3113 3254 -18 22 56 0 0 chr13 30913721 30913757 -70959412 + AT_rich Low_complexity Low_complexity 1 36 0 371 234 47 104 chr13 30913929 30913977 -70959192 - MIR SINE MIR -19 243 194 1412 208 102 47 chr13 30913977 30914361 -70958808 + MLT1I LTR MaLR 3 407 -2 371 234 47 104 chr13 30914361 30914411 -70958758 - MIR SINE MIR -68 194 143 1523 249 92 9 chr13 30914411 30914836 -70958333 + LTR40b LTR ERVL 3 462 0 371 234 47 104 chr13 30914836 30914928 -70958241 - MIR SINE MIR -119 143 63 216 175 0 0 chr13 30914982 30915022 -70958147 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 582 259 60 50 chr13 30915505 30915706 -70957463 + MIR SINE MIR 47 249 -13 182 250 107 36 chr13 30915943 30916027 -70957142 - L2 LINE L2 -25 3288 3199 284 343 10 0 chr13 30916400 30916502 -70956667 - L2 LINE L2 -584 2730 2628 2128 146 0 0 chr13 30916519 30916820 -70956349 + AluSx SINE Alu 1 301 -11 701 228 118 29 chr13 30917517 30917763 -70955406 + L1ME4a LINE L1 5560 5827 -294 288 234 105 24 chr13 30917845 30917969 -70955200 + L1ME4a LINE L1 5810 5943 -178 548 307 62 33 chr13 30918110 30918348 -70954821 - MIR SINE MIR -2 260 9 582 267 19 19 chr13 30918811 30918972 -70954197 + MIR3 SINE MIR 48 208 0 646 252 130 17 chr13 30920032 30920262 -70952907 - MIR SINE MIR -6 256 1 252 184 0 0 chr13 30920291 30920340 -70952829 + (TG)n Simple_repeat Simple_repeat 2 50 0 457 232 0 11 chr13 30920926 30921021 -70952148 + MER94 DNA DNA 1 94 -40 1691 167 29 0 chr13 30921025 30921173 -70951996 - AluJb SINE Alu -29 283 122 225 0 0 0 chr13 30921173 30921198 -70951971 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1691 167 29 0 chr13 30921198 30921324 -70951845 - AluJb SINE Alu -190 122 1 2498 179 65 70 chr13 30922965 30923580 -70949589 + LTR9 LTR ERV1 1 612 0 1798 146 0 57 chr13 30923766 30924081 -70949088 + AluSx SINE Alu 1 297 -15 226 237 0 66 chr13 30924670 30924746 -70948423 + LTR33A LTR ERVL 420 490 -33 866 261 105 17 chr13 30924751 30925046 -70948123 + MLT1J2 LTR MaLR 9 329 -121 847 160 0 20 chr13 30925420 30925570 -70947599 + L1MA9 LINE L1 6166 6312 0 525 307 40 36 chr13 30926824 30927049 -70946120 - MIR SINE MIR -31 231 6 1205 250 11 11 chr13 30927376 30927656 -70945513 + L1ME1 LINE L1 5877 6156 -10 28 0 0 0 chr13 30928700 30928728 -70944441 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr13 30932567 30932598 -70940571 + AT_rich Low_complexity Low_complexity 1 31 0 294 276 20 0 chr13 30933021 30933119 -70940050 + (CTA)n Simple_repeat Simple_repeat 1 100 0 431 250 118 0 chr13 30933897 30934049 -70939120 + MIR SINE MIR 37 206 -56 283 232 37 12 chr13 30934148 30934230 -70938939 + L2 LINE L2 3230 3313 0 240 383 35 14 chr13 30935690 30935831 -70937338 + MIR3 SINE MIR 35 178 -30 410 248 53 30 chr13 30936615 30936748 -70936421 - MIR SINE MIR -9 253 118 205 213 21 0 chr13 30937050 30937097 -70936072 + GA-rich Low_complexity Low_complexity 4 51 0 4791 134 15 9 chr13 30939174 30939929 -70933240 - L1PA13 LINE L1 -19 6144 5386 966 186 48 11 chr13 30940035 30940223 -70932946 - MER20 DNA MER1_type -4 215 21 1303 235 68 9 chr13 30941074 30941398 -70931771 + MER2 DNA MER2_type 1 343 -1 2067 162 26 3 chr13 30942151 30942491 -70930678 + MER7A DNA MER2_type 1 346 0 389 113 99 28 chr13 30942553 30942624 -70930545 + MER20 DNA MER1_type 67 142 -77 417 306 163 6 chr13 30943090 30943250 -70929919 + MIR SINE MIR 30 214 -48 350 298 8 68 chr13 30943842 30944031 -70929138 + MIR3 SINE MIR 1 183 -59 2010 130 7 10 chr13 30945171 30945479 -70927690 + L1MA2 LINE L1 5996 6302 -2 277 325 7 33 chr13 30945563 30945714 -70927455 + GA-rich Low_complexity Low_complexity 4 150 0 287 317 24 21 chr13 30945768 30945976 -70927193 + GA-rich Low_complexity Low_complexity 1 208 0 2596 43 10 0 chr13 30946715 30947018 -70926151 - AluY SINE Alu -5 306 1 442 265 241 0 chr13 30947083 30947253 -70925916 + MIR SINE MIR 41 251 -11 209 260 221 0 chr13 30949029 30949106 -70924063 - L2 LINE L2 -9 3263 3170 231 200 40 20 chr13 30949128 30949178 -70923991 + L1PBa LINE L1 625 675 -6188 470 269 67 52 chr13 30950063 30950196 -70922973 + MIR SINE MIR 57 195 -67 2384 100 0 0 chr13 30950196 30950506 -70922663 + AluSg SINE Alu 1 310 0 470 269 67 52 chr13 30950506 30950565 -70922604 + MIR SINE MIR 195 252 -10 383 275 90 60 chr13 30951351 30951518 -70921651 + MER5B DNA MER1_type 6 177 -1 189 226 0 0 chr13 30951783 30951836 -70921333 + (CTGGGG)n Simple_repeat Simple_repeat 3 55 0 184 212 30 106 chr13 30952956 30952969 -70920200 + MIR SINE MIR 58 70 -138 1804 178 7 0 chr13 30952969 30953273 -70919896 + AluJb SINE Alu 1 306 -6 184 212 30 106 chr13 30953273 30953325 -70919844 + MIR SINE MIR 70 118 -90 293 330 85 0 chr13 30955142 30955236 -70917933 + L2 LINE L2 3158 3259 -13 1333 224 76 14 chr13 30956463 30956807 -70916362 + MLT1A1 LTR MaLR 1 365 0 1608 163 42 10 chr13 30956977 30957290 -70915879 + MER33 DNA MER1_type 1 323 -1 568 304 33 49 chr13 30957619 30957862 -70915307 + MER102b DNA MER1_type 103 341 0 803 180 60 7 chr13 30958300 30958450 -70914719 - MER45A DNA AcHobo -19 159 2 374 152 0 13 chr13 30959043 30959122 -70914047 + (TG)n Simple_repeat Simple_repeat 1 78 0 3308 278 72 26 chr13 30959213 30960352 -70912817 - L2 LINE L2 -1 3312 2227 1562 179 3 41 chr13 30960352 30960642 -70912527 + AluJo SINE Alu 1 279 -33 396 0 0 0 chr13 30960642 30960686 -70912483 + (CA)n Simple_repeat Simple_repeat 1 44 0 3308 278 72 26 chr13 30960686 30961035 -70912134 - L2 LINE L2 -1085 2228 1759 1271 166 38 76 chr13 30961975 30962289 -70910880 - MER33 DNA MER1_type -22 302 1 228 301 19 19 chr13 30962679 30962782 -70910387 - L2 LINE L2 -484 2830 2728 334 260 39 0 chr13 30962811 30962915 -70910254 - MIR3 SINE MIR -50 158 51 21 36 0 0 chr13 30963329 30963357 -70909812 + AT_rich Low_complexity Low_complexity 1 28 0 352 316 34 17 chr13 30963876 30963993 -70909176 - L2 LINE L2 -12 3260 3142 2017 185 52 79 chr13 30963993 30964512 -70908657 - MLT1D LTR MaLR 0 505 1 656 242 37 64 chr13 30965976 30966273 -70906896 + L1ME3A LINE L1 5876 6164 -6 2134 117 0 0 chr13 30966274 30966600 -70906569 + AluSg SINE Alu 1 326 0 2313 99 3 19 chr13 30966703 30967017 -70906152 + AluSx SINE Alu 1 309 -3 2025 169 107 26 chr13 30967212 30967631 -70905538 + MLT2C2 LTR ERVL 1 453 -11 194 236 69 42 chr13 30969309 30969381 -70903788 - MIR SINE MIR -79 183 110 2186 119 0 0 chr13 30969500 30969794 -70903375 + AluSx SINE Alu 1 294 -18 245 271 59 12 chr13 30970624 30970709 -70902460 - L2 LINE L2 -18 3254 3166 1528 184 32 23 chr13 30971944 30972253 -70900916 + AluJo SINE Alu 1 312 0 192 40 0 0 chr13 30972263 30972288 -70900881 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 762 345 72 17 chr13 30972551 30973012 -70900157 + L2 LINE L2 2392 2877 -437 547 204 15 83 chr13 30973046 30973178 -70899991 - L2 LINE L2 -2 3311 3189 601 285 26 0 chr13 30973193 30973344 -70899825 + L2 LINE L2 3158 3312 -1 2403 42 0 7 chr13 30973989 30974298 -70898871 + AluY SINE Alu 1 307 0 183 85 64 0 chr13 30975499 30975546 -70897623 + (TA)n Simple_repeat Simple_repeat 2 51 0 688 299 108 0 chr13 30975733 30975964 -70897205 - MIR SINE MIR 0 262 7 180 0 0 0 chr13 30976868 30976888 -70896281 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 1566 270 67 57 chr13 30976888 30977751 -70895418 - L2 LINE L2 -13 3300 2435 2419 80 3 0 chr13 30977773 30978072 -70895097 + AluSp SINE Alu 13 312 -1 267 348 54 0 chr13 30979026 30979138 -70894031 + MIR SINE MIR 28 145 -63 276 324 0 0 chr13 30979300 30979371 -70893798 + MIR SINE MIR 84 154 -108 327 215 295 20 chr13 30980037 30980186 -70892983 + MIR SINE MIR 1 190 -72 216 220 187 22 chr13 30980259 30980294 -70892875 - MIR SINE MIR -66 196 168 2646 123 5 14 chr13 30980294 30980661 -70892508 - THE1B LTR MaLR 0 364 1 216 220 187 22 chr13 30980661 30980716 -70892453 - MIR SINE MIR -94 168 91 321 206 192 0 chr13 30980896 30980969 -70892200 - MIR3 SINE MIR -37 171 85 382 295 67 99 chr13 30981082 30981394 -70891775 - L2 LINE L2 -85 3187 2886 934 298 159 12 chr13 30981642 30982138 -70891031 + L3 LINE CR1 414 982 -595 720 320 201 20 chr13 30982701 30983189 -70889980 + L3 LINE CR1 989 1564 -13 475 292 91 8 chr13 30983347 30983590 -70889579 - L3b LINE CR1 -142 1441 1179 268 210 99 49 chr13 30983841 30983922 -70889247 + MER103 DNA DNA 69 153 -13 259 283 158 13 chr13 30984238 30984390 -70888779 - MIR3 SINE MIR -19 189 16 186 311 165 29 chr13 30984449 30984552 -70888617 + MER5A DNA MER1_type 71 187 -2 218 277 148 0 chr13 30984633 30984734 -70888435 + MIR3 SINE MIR 92 207 -1 325 273 173 32 chr13 30984871 30985091 -70888078 - MIR SINE MIR -10 252 2 191 238 32 48 chr13 30985143 30985206 -70887963 + L2 LINE L2 3242 3303 -10 295 401 94 10 chr13 30987334 30987536 -70885633 - L2 LINE L2 0 3272 3054 492 309 0 14 chr13 30987611 30987750 -70885419 + MER5B DNA MER1_type 2 138 -40 868 315 87 39 chr13 30990639 30991759 -70881410 + L1ME LINE L1 4525 5716 -454 722 289 98 26 chr13 30991804 30992298 -70880871 + L1ME3A LINE L1 3169 3695 -2451 2151 97 4 0 chr13 30992298 30992577 -70880592 + AluSg SINE Alu 17 296 -14 997 283 42 30 chr13 30992577 30993071 -70880098 + L1ME3A LINE L1 4267 4766 -1380 459 200 79 55 chr13 30993077 30993242 -70879927 - MER69A DNA AcHobo 0 177 9 1718 286 65 29 chr13 30993270 30993583 -70879586 + L1ME3A LINE L1 4785 5085 -1085 774 172 28 7 chr13 30993583 30993728 -70879441 + L1PA16 LINE L1 6010 6157 -9 1718 286 65 29 chr13 30993728 30993866 -70879303 + L1ME3A LINE L1 5085 5217 -953 559 214 54 12 chr13 30993866 30994034 -70879135 + MER104 DNA MER2_type 4 178 -2 1718 286 65 29 chr13 30994034 30994699 -70878470 + L1ME3A LINE L1 5217 5951 -219 21 71 0 0 chr13 30995147 30995189 -70877980 + AT_rich Low_complexity Low_complexity 1 42 0 373 323 8 8 chr13 30995564 30995691 -70877478 - L2 LINE L2 -23 3290 3164 2802 105 6 0 chr13 30996207 30996568 -70876601 + THE1B LTR MaLR 1 363 -1 296 273 73 18 chr13 30996666 30996776 -70876393 - L2 LINE L2 0 3313 3198 335 252 92 0 chr13 30996907 30997038 -70876131 + HAL1 LINE L1 2005 2147 -360 1979 113 0 45 chr13 30997211 30997521 -70875648 + AluSx SINE Alu 1 296 -16 2453 168 2 57 chr13 30997636 30998095 -70875074 - Tigger2a DNA MER2_type 0 434 1 1719 180 0 0 chr13 30999702 30999969 -70873200 + Tigger7 DNA MER2_type 1 267 -466 587 186 10 0 chr13 30999967 31000064 -70873105 + Tigger7 DNA MER2_type 2389 2486 -1 * 250 231 0 0 chr13 31000581 31000633 -70872536 + L2 LINE L2 3262 3313 0 783 257 77 18 chr13 31000744 31000966 -70872203 - MIR SINE MIR -26 236 2 21 0 0 0 chr13 31001765 31001786 -70871383 + AT_rich Low_complexity Low_complexity 1 21 0 1946 142 3 24 chr13 31002342 31002637 -70870532 - AluJo SINE Alu -15 297 9 192 125 0 0 chr13 31002743 31002775 -70870394 + (CAT)n Simple_repeat Simple_repeat 1 32 0 336 292 169 19 chr13 31002813 31002967 -70870202 - MIR SINE MIR -58 204 28 696 196 127 0 chr13 31003143 31003304 -70869865 - MER5A DNA MER1_type 0 189 4 25 0 0 0 chr13 31003897 31003922 -70869247 + AT_rich Low_complexity Low_complexity 1 25 0 232 289 72 58 chr13 31006607 31006901 -70866268 - L2 LINE L2 -10 3303 2924 2075 113 23 0 chr13 31007685 31007987 -70865182 + AluSc SINE Alu 1 309 0 203 61 30 0 chr13 31008675 31008708 -70864461 + (CA)n Simple_repeat Simple_repeat 2 35 0 1303 199 0 15 chr13 31009756 31010027 -70863142 + AluJo SINE Alu 40 306 -6 1419 81 4 136 chr13 31011857 31011935 -70861234 - L1PB2 LINE L1 -2 6149 6062 2033 121 24 0 chr13 31011935 31012233 -70860936 - AluSc SINE Alu -4 305 1 1419 81 4 136 chr13 31012233 31012427 -70860742 - L1PB2 LINE L1 -89 6062 5913 227 308 143 33 chr13 31013078 31013169 -70860000 - L2 LINE L2 -19 3253 3153 288 346 13 44 chr13 31013204 31013363 -70859806 - L2 LINE L2 -452 2862 2709 354 336 159 28 chr13 31013381 31013664 -70859505 + L1ME LINE L1 5382 5701 -420 690 210 61 33 chr13 31014241 31014422 -70858747 + MER53 DNA DNA 4 189 0 265 291 225 35 chr13 31014765 31014884 -70858285 - L2 LINE L2 -455 2859 2764 405 0 0 0 chr13 31014884 31014929 -70858240 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 291 225 35 chr13 31014929 31015067 -70858102 - L2 LINE L2 -550 2764 2553 186 227 0 0 chr13 31015074 31015118 -70858051 + GA-rich Low_complexity Low_complexity 5 48 0 214 301 114 41 chr13 31016312 31016435 -70856734 - MIR SINE MIR -120 142 11 283 266 138 11 chr13 31017551 31017645 -70855524 + L2 LINE L2 3208 3313 0 279 0 0 0 chr13 31019326 31019357 -70853812 + (CA)n Simple_repeat Simple_repeat 2 32 0 2683 169 40 16 chr13 31019520 31020143 -70853026 + L1MA9 LINE L1 5558 6291 -21 449 285 32 65 chr13 31020251 31020437 -70852732 - MER91A DNA MER1_type 0 196 17 484 179 116 45 chr13 31020742 31020854 -70852315 + AluJo SINE Alu 1 120 -192 6686 131 16 9 chr13 31020855 31022145 -70851024 + HERVH LTR ERV1 3685 4910 -2287 1569 138 35 0 chr13 31022145 31022406 -70850763 + HERVH LTR ERV1 5747 6016 -1697 * 3641 116 14 9 chr13 31022399 31022953 -70850216 + HERVH LTR ERV1 7157 7713 0 1174 171 88 107 chr13 31022953 31023410 -70849759 + LTR7 LTR ERV1 1 448 -2 1172 151 5 19 chr13 31023412 31023617 -70849552 + AluJo SINE Alu 103 304 -8 300 322 51 0 chr13 31023858 31023976 -70849193 + MIR3 SINE MIR 50 173 -35 536 328 109 13 chr13 31025946 31026184 -70846985 - MIR SINE MIR 0 262 2 5151 74 1 1 chr13 31026255 31026918 -70846251 - L1PA8 LINE L1 -1 6171 5509 736 263 96 5 chr13 31026922 31027120 -70846049 - MIR SINE MIR -36 226 11 4497 134 14 21 chr13 31027326 31028037 -70845132 + MER50 LTR ERV1 1 706 -28 1083 258 75 95 chr13 31028103 31028300 -70844869 - MER21B LTR ERV1 -169 694 495 1824 164 0 0 chr13 31028300 31028599 -70844570 - AluSx SINE Alu -13 299 1 1083 258 75 95 chr13 31028599 31029010 -70844159 - MER21B LTR ERV1 -368 495 98 318 271 8 85 chr13 31028983 31029112 -70844057 - MER77 LTR ERV1 -408 197 79 * 203 293 0 81 chr13 31029479 31029578 -70843591 - MIR3 SINE MIR -8 200 110 305 232 0 0 chr13 31029700 31029756 -70843413 + MIR SINE MIR 92 147 -61 279 233 0 0 chr13 31030298 31030358 -70842811 + MER91 DNA MER1_type 81 140 0 271 293 52 9 chr13 31031168 31031284 -70841885 + MIR SINE MIR 18 138 -70 2110 74 3 11 chr13 31031765 31032077 -70841092 - AluSg1 SINE Alu 0 310 1 188 260 68 14 chr13 31032558 31032631 -70840538 + MER5A DNA MER1_type 11 87 -102 206 250 50 0 chr13 31032756 31032816 -70840353 + MER5A DNA MER1_type 33 95 -94 399 246 52 77 chr13 31033806 31034010 -70839159 - MIR3 SINE MIR -57 205 10 4057 102 27 0 chr13 31034036 31034627 -70838542 - L1MA2 LINE L1 0 6304 5698 181 325 63 40 chr13 31034627 31034753 -70838416 + L2 LINE L2 1775 1903 -1411 2115 188 30 26 chr13 31034757 31035220 -70837949 + MLT1C LTR MaLR 1 465 -2 1166 334 115 18 chr13 31035220 31036049 -70837120 + L2 LINE L2 1901 2809 -505 484 322 40 0 chr13 31036069 31036221 -70836948 + MIR SINE MIR 91 248 -14 213 235 0 0 chr13 31036224 31036275 -70836894 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1377 202 30 4 chr13 31036380 31036642 -70836527 + THE1A LTR MaLR 1 269 -86 293 328 66 97 chr13 31036743 31037002 -70836167 + L2 LINE L2 3022 3272 0 864 328 64 48 chr13 31037625 31038144 -70835025 + L3 LINE CR1 735 1261 -316 566 179 132 0 chr13 31038188 31038294 -70834875 - FLAM_A SINE Alu -13 120 1 324 360 58 0 chr13 31038674 31038813 -70834356 + L3 LINE CR1 1372 1518 -59 496 315 28 6 chr13 31038824 31039002 -70834167 - MER5A DNA MER1_type -7 182 1 309 253 77 0 chr13 31039473 31039564 -70833605 + MER20B DNA MER1_type 44 141 -642 211 209 0 0 chr13 31040808 31040851 -70832318 + (TGAA)n Simple_repeat Simple_repeat 4 46 0 292 284 114 0 chr13 31040947 31041035 -70832134 - MIR SINE MIR -131 131 34 846 252 59 28 chr13 31041457 31041711 -70831458 - MIR SINE MIR 0 262 1 199 292 77 15 chr13 31041721 31041786 -70831383 + MIR SINE MIR 32 100 -108 * 288 278 127 16 chr13 31041779 31041905 -70831264 - L2 LINE L2 -217 3055 2916 1671 169 13 23 chr13 31042074 31042382 -70830787 + AluJo SINE Alu 2 306 -6 3269 168 16 5 chr13 31043501 31044056 -70829113 - MER68 LTR ERV1 -1 561 1 345 47 0 0 chr13 31044337 31044380 -70828789 + (TTG)n Simple_repeat Simple_repeat 3 45 0 265 254 27 45 chr13 31044430 31044540 -70828629 + LTR16C LTR ERVL 350 457 -34 1692 195 0 3 chr13 31044547 31044860 -70828309 - AluJo SINE Alu 0 312 1 180 325 182 39 chr13 31045048 31045251 -70827918 - L2 LINE L2 0 3313 3082 202 246 140 79 chr13 31045342 31045456 -70827713 - L2 LINE L2 -1045 2269 2149 261 241 111 46 chr13 31045716 31045824 -70827345 - MIR3 SINE MIR -6 202 88 471 315 0 82 chr13 31045831 31045982 -70827187 + L2 LINE L2 3104 3240 -32 1819 123 25 0 chr13 31045982 31046284 -70826885 - AluSx SINE Alu 0 309 1 471 315 0 82 chr13 31046284 31046315 -70826854 + L2 LINE L2 3240 3272 0 22 0 0 0 chr13 31050473 31050495 -70822674 + AT_rich Low_complexity Low_complexity 1 22 0 1342 165 84 40 chr13 31051027 31051348 -70821821 + MER2 DNA MER2_type 1 335 -10 408 331 172 8 chr13 31051973 31052333 -70820836 + L2 LINE L2 1932 2350 -964 377 310 18 127 chr13 31052385 31052669 -70820500 - L2 LINE L2 -40 3232 2980 1639 126 4 0 chr13 31052873 31053119 -70820050 + AluSp SINE Alu 57 303 -10 201 229 0 0 chr13 31053250 31053298 -70819871 + CT-rich Low_complexity Low_complexity 2 49 0 341 231 12 17 chr13 31053498 31053638 -70819531 + GA-rich Low_complexity Low_complexity 1 140 -814 1838 181 69 82 chr13 31053638 31053941 -70819228 - MLT1D LTR MaLR -3 502 207 1725 136 54 0 chr13 31053941 31054221 -70818948 - AluJb SINE Alu -13 299 5 1838 181 69 82 chr13 31054221 31054426 -70818743 - MLT1D LTR MaLR -298 207 1 341 231 12 17 chr13 31054426 31054458 -70818711 + GA-rich Low_complexity Low_complexity 140 954 0 222 250 67 42 chr13 31054576 31054696 -70818473 + L2 LINE L2 3191 3313 0 346 277 214 14 chr13 31055712 31055932 -70817237 - L2 LINE L2 0 3313 3050 864 250 19 5 chr13 31056393 31056605 -70816564 - MER20 DNA MER1_type 0 219 5 279 0 0 0 chr13 31056746 31056777 -70816392 + (CA)n Simple_repeat Simple_repeat 1 31 0 279 339 92 31 chr13 31058006 31058148 -70815021 + MIR SINE MIR 4 148 -60 198 71 0 0 chr13 31058149 31058177 -70814992 + (ATG)n Simple_repeat Simple_repeat 2 29 0 1803 170 13 29 chr13 31058214 31058525 -70814644 + AluJo SINE Alu 1 306 -6 1734 99 0 5 chr13 31059678 31059901 -70813268 + AluSc SINE Alu 1 222 -87 333 0 0 0 chr13 31060196 31060233 -70812936 + (TG)n Simple_repeat Simple_repeat 1 37 0 451 258 68 0 chr13 31060489 31060637 -70812532 - MER20B DNA MER1_type -22 197 37 1651 214 15 42 chr13 31060737 31061143 -70812026 - MLT2C1 LTR ERVL 0 397 3 542 240 23 0 chr13 31061144 31061273 -70811896 + MER94 DNA DNA 3 134 0 524 214 119 0 chr13 31061545 31061671 -70811498 + MIR SINE MIR 12 152 -110 305 229 36 0 chr13 31061739 31061822 -70811347 + L2 LINE L2 1936 2021 -1293 818 309 84 54 chr13 31061833 31062380 -70810789 + L2 LINE L2 2154 2748 -524 329 0 24 0 chr13 31062380 31062421 -70810748 + (CA)n Simple_repeat Simple_repeat 1 42 0 818 309 84 54 chr13 31062421 31062737 -70810432 + L2 LINE L2 2748 3053 -219 1718 169 121 6 chr13 31062887 31063242 -70809927 + MSTD LTR MaLR 1 396 0 2296 106 3 0 chr13 31063297 31063590 -70809579 - AluSg SINE Alu -16 294 1 370 253 18 46 chr13 31063665 31063813 -70809356 - MIR SINE MIR -55 153 31 180 0 0 0 chr13 31064152 31064172 -70808997 + (A)n Simple_repeat Simple_repeat 1 20 0 347 320 67 13 chr13 31064456 31064606 -70808563 + MIR3 SINE MIR 19 176 -32 2250 76 40 23 chr13 31064740 31065044 -70808125 + AluY SINE Alu 1 309 -2 2549 153 61 67 chr13 31065295 31065611 -70807558 - MLT1D LTR MaLR 0 505 189 1687 176 39 23 chr13 31065611 31065917 -70807252 - AluJo SINE Alu -1 311 1 2549 153 61 67 chr13 31065917 31065988 -70807181 - MLT1D LTR MaLR -316 189 119 2159 197 76 5 chr13 31065988 31066424 -70806745 + MLT1C LTR MaLR 1 467 0 2549 153 61 67 chr13 31066424 31066543 -70806626 - MLT1D LTR MaLR -386 119 1 1497 205 81 40 chr13 31067050 31067494 -70805675 + MLT1C LTR MaLR 6 467 0 439 260 81 15 chr13 31068165 31068494 -70804675 + L1MB8 LINE L1 5668 6013 -151 329 175 63 0 chr13 31068636 31068699 -70804470 - AluS SINE Alu -1 299 233 2191 79 0 4 chr13 31068806 31069073 -70804096 - AluY SINE Alu -45 266 1 238 330 0 10 chr13 31069358 31069455 -70803714 + L2 LINE L2 2995 3090 -182 298 304 161 0 chr13 31069694 31069862 -70803307 + L3b LINE CR1 1221 1415 -168 * 331 330 94 9 chr13 31069849 31070029 -70803140 + MIR SINE MIR 6 208 -54 2087 106 35 0 chr13 31070029 31070312 -70802857 + AluSx SINE Alu 1 293 -19 331 330 94 9 chr13 31070312 31070343 -70802826 + MIR SINE MIR 208 235 -27 779 183 143 0 chr13 31072196 31072426 -70800743 - Charlie5 DNA MER1_type 0 2616 2354 701 197 0 8 chr13 31072449 31072571 -70800598 + FLAM_A SINE Alu 5 125 -8 764 185 96 11 chr13 31072589 31072767 -70800402 - Charlie5 DNA MER1_type -2419 193 1 288 308 57 13 chr13 31072784 31072943 -70800226 - L3 LINE CR1 -96 1481 1316 2465 63 3 0 chr13 31073513 31073814 -70799355 - AluSp SINE Alu -10 303 2 236 250 0 0 chr13 31073915 31073979 -70799190 - L1MC4a LINE L1 -1876 5932 5869 253 360 103 7 chr13 31076648 31076784 -70796385 + L2 LINE L2 3121 3269 -3 436 207 95 101 chr13 31077392 31077561 -70795608 + MIR SINE MIR 5 172 -90 591 251 48 18 chr13 31077722 31077889 -70795280 - MER45A DNA AcHobo -6 172 1 417 304 107 18 chr13 31078216 31078384 -70794785 + MIR3 SINE MIR 22 204 -4 1033 169 27 0 chr13 31078940 31079124 -70794045 - MER5A DNA MER1_type 0 189 1 2329 75 0 7 chr13 31079200 31079495 -70793674 + AluY SINE Alu 1 293 -18 2516 81 0 0 chr13 31079559 31079869 -70793300 + AluY SINE Alu 1 310 -1 233 233 93 12 chr13 31079956 31080042 -70793127 - MER5A DNA MER1_type -32 157 65 459 223 151 7 chr13 31080526 31080665 -70792504 - MER5A DNA MER1_type -1 188 30 1027 271 47 28 chr13 31081785 31082013 -70791156 + L1MD2 LINE L1 5470 5573 -597 2168 128 0 0 chr13 31082013 31082317 -70790852 + AluSx SINE Alu 1 304 -8 1027 271 47 28 chr13 31082317 31082532 -70790637 + L1MD2 LINE L1 5573 5783 -387 246 293 132 42 chr13 31082590 31082783 -70790386 + L1ME3A LINE L1 5940 6155 -15 441 0 0 0 chr13 31082783 31082832 -70790337 + (CA)n Simple_repeat Simple_repeat 1 49 0 246 293 132 42 chr13 31082832 31082850 -70790319 + L1ME3A LINE L1 6155 6170 0 2208 90 7 0 chr13 31082864 31083214 -70789955 + AluSg SINE Alu 1 352 0 1920 147 3 29 chr13 31084362 31084668 -70788501 + AluJo SINE Alu 1 298 -14 504 299 126 19 chr13 31084864 31085295 -70787874 - L2 LINE L2 -195 3077 2593 637 287 60 0 chr13 31085541 31085757 -70787412 + MIR SINE MIR 22 250 -12 23 0 0 0 chr13 31086448 31086471 -70786698 + AT_rich Low_complexity Low_complexity 1 23 0 212 286 0 0 chr13 31088807 31088863 -70784306 - L2 LINE L2 -16 3297 3242 465 256 92 43 chr13 31089263 31089470 -70783699 + L2 LINE L2 3097 3313 0 2140 159 11 19 chr13 31089857 31090227 -70782942 + L1MB4 LINE L1 5286 5652 -531 2409 151 26 30 chr13 31090233 31090698 -70782471 + L1MB4 LINE L1 5717 6179 -1 2279 99 7 0 chr13 31090873 31091167 -70782002 - AluSq SINE Alu -9 304 9 4085 146 9 0 chr13 31093175 31093804 -70779365 + MER41B LTR ERV1 1 635 0 516 307 88 30 chr13 31094702 31095087 -70778082 + MLT1J LTR MaLR 59 511 0 1028 228 65 8 chr13 31098681 31098944 -70774225 - LTR33 LTR ERVL 0 521 244 358 197 45 83 chr13 31098942 31099074 -70774095 - LTR33 LTR ERVL -394 127 1 * 292 227 118 50 chr13 31099176 31099295 -70773874 + MIR SINE MIR 25 151 -111 501 192 24 51 chr13 31100701 31100859 -70772310 + MIR SINE MIR 31 182 -61 183 129 0 0 chr13 31101156 31101187 -70771982 + (CAT)n Simple_repeat Simple_repeat 2 32 0 183 274 24 48 chr13 31101504 31101588 -70771581 + L2 LINE L2 3188 3269 -3 297 0 0 0 chr13 31101652 31101685 -70771484 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 804 209 8 57 chr13 31102309 31102553 -70770616 - L1MC5 LINE L1 -38 7923 7692 2492 62 7 10 chr13 31102716 31103025 -70770144 + AluY SINE Alu 1 308 -3 304 398 55 6 chr13 31103172 31103536 -70769633 + L1MEc LINE L1 503 884 -5941 258 105 0 0 chr13 31104029 31104067 -70769102 + (CA)n Simple_repeat Simple_repeat 2 39 0 237 267 125 8 chr13 31104090 31104210 -70768959 + L1MEc LINE L1 1115 1248 -5298 638 202 9 0 chr13 31104312 31104421 -70768748 - FLAM_A SINE Alu -20 122 13 767 272 50 3 chr13 31104429 31104750 -70768419 + L1MEc LINE L1 1303 1572 -4970 1014 260 39 24 chr13 31104773 31105104 -70768065 - MER76 LTR ERV -11 677 342 1772 175 6 19 chr13 31105105 31105419 -70767750 + AluJo SINE Alu 1 310 -2 989 176 39 11 chr13 31105428 31105610 -70767559 - MER76 LTR ERV -488 200 14 653 288 47 0 chr13 31105613 31105828 -70767341 + L1MEc LINE L1 1733 1957 -4868 242 301 0 0 chr13 31105843 31105916 -70767253 + A-rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr13 31105941 31105962 -70767207 + AT_rich Low_complexity Low_complexity 1 21 0 1283 246 59 33 chr13 31105963 31106149 -70767020 + L1MEc LINE L1 1962 2142 -4683 1572 206 24 7 chr13 31106149 31106436 -70766733 + AluJb SINE Alu 2 293 -19 1283 246 59 33 chr13 31106436 31106708 -70766461 + L1MEc LINE L1 2142 2432 -4393 203 221 303 57 chr13 31108432 31108713 -70764456 - L2 LINE L2 -15 3298 2949 1136 323 54 10 chr13 31109521 31110020 -70763149 + LTR33 LTR ERVL 1 521 0 873 283 48 58 chr13 31110227 31110661 -70762508 + L2 LINE L2 2835 3264 -49 274 291 89 0 chr13 31111058 31111137 -70762032 - L2 LINE L2 -27 3286 3201 679 259 24 131 chr13 31113524 31113814 -70759355 - L2 LINE L2 0 3272 3014 593 355 10 0 chr13 31113993 31114196 -70758973 - MIR SINE MIR -11 251 47 410 70 0 99 chr13 31114228 31114299 -70758870 + AluS SINE Alu 4 67 -246 2088 143 45 3 chr13 31114526 31114882 -70758287 - L1PA15 LINE L1 -2 6163 5793 241 280 13 0 chr13 31114893 31114968 -70758201 - L3b LINE CR1 -318 1265 1190 2066 87 6 62 chr13 31115089 31115410 -70757759 + AluSq SINE Alu 1 303 -10 1548 248 68 22 chr13 31116120 31116308 -70756861 - MLT1J LTR MaLR -54 457 279 1306 197 0 0 chr13 31116308 31116531 -70756638 + MER58A DNA MER1_type 1 223 -1 1548 248 68 22 chr13 31116531 31116757 -70756412 - MLT1J LTR MaLR -232 279 24 2020 203 17 0 chr13 31117102 31117521 -70755648 + L1PB4 LINE L1 5725 6150 -6 24 0 0 0 chr13 31117521 31117545 -70755624 + AT_rich Low_complexity Low_complexity 1 24 0 696 261 49 5 chr13 31118835 31119019 -70754150 + MER91A DNA MER1_type 3 194 -2 1904 121 48 0 chr13 31119158 31119448 -70753721 + AluSx SINE Alu 4 307 -5 506 283 103 30 chr13 31119795 31120028 -70753141 + MIR SINE MIR 11 260 -2 273 119 0 0 chr13 31122301 31122343 -70750826 + (A)n Simple_repeat Simple_repeat 1 42 0 1251 248 10 10 chr13 31122508 31122798 -70750371 + MLT1I LTR MaLR 120 409 0 374 208 40 163 chr13 31125510 31125712 -70747457 + L2 LINE L2 2921 3097 -175 3725 158 76 13 chr13 31125886 31126634 -70746535 - L1MC3 LINE L1 -12 7773 6979 251 273 15 0 chr13 31126636 31126702 -70746467 + L2 LINE L2 3246 3312 -1 2110 166 26 18 chr13 31126704 31127089 -70746080 + MLT1B LTR MaLR 1 388 -2 267 337 48 0 chr13 31127534 31127617 -70745552 + MIR3 SINE MIR 93 179 -29 593 286 36 55 chr13 31127649 31127756 -70745413 - MIR SINE MIR -44 218 111 1879 120 0 40 chr13 31127756 31128081 -70745088 + AluSx SINE Alu 1 312 0 593 286 36 55 chr13 31128081 31128193 -70744976 - MIR SINE MIR -151 111 3 24 0 0 0 chr13 31134809 31134833 -70738336 + GC_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr13 31136612 31136650 -70736519 + AT_rich Low_complexity Low_complexity 1 38 0 349 235 61 53 chr13 31137458 31137590 -70735579 + L1MC5 LINE L1 7733 7865 -96 762 307 0 9 chr13 31137735 31137953 -70735216 - MIR SINE MIR 0 262 47 226 288 0 30 chr13 31138878 31138944 -70734225 + MIR SINE MIR 183 246 -16 240 184 0 0 chr13 31139498 31139547 -70733622 + (CATA)n Simple_repeat Simple_repeat 2 50 0 279 324 39 70 chr13 31140104 31140363 -70732806 + L2 LINE L2 2286 2536 -778 1245 243 49 54 chr13 31140484 31140891 -70732278 + LTR16C LTR ERVL 85 489 -2 180 111 0 0 chr13 31140917 31140944 -70732225 + (T)n Simple_repeat Simple_repeat 1 27 0 2118 93 0 3 chr13 31140962 31141251 -70731918 + AluSg SINE Alu 2 289 -21 367 283 166 13 chr13 31141262 31141425 -70731744 - MIR SINE MIR -31 231 45 288 318 111 48 chr13 31141460 31141812 -70731357 + L2 LINE L2 2594 2967 -347 332 228 35 70 chr13 31142028 31142142 -70731027 + L2 LINE L2 3202 3311 -2 337 293 0 0 chr13 31143133 31143215 -70729954 - LTR16A1 LTR ERVL 0 457 376 803 186 0 7 chr13 31143227 31143367 -70729802 + FLAM_C SINE Alu 1 139 -4 408 266 124 72 chr13 31143369 31143606 -70729563 - LTR16A1 LTR ERVL -104 353 92 2251 75 0 0 chr13 31143606 31143919 -70729250 + AluY SINE Alu 1 313 0 408 266 124 72 chr13 31143919 31144011 -70729158 - LTR16A1 LTR ERVL -365 92 6 571 204 191 31 chr13 31144018 31144070 -70729099 - MER5A DNA MER1_type -1 188 146 719 179 0 0 chr13 31144070 31144187 -70728982 + FLAM_A SINE Alu 2 118 -15 279 0 0 0 chr13 31144187 31144218 -70728951 + (CA)n Simple_repeat Simple_repeat 2 32 0 571 204 191 31 chr13 31144218 31144326 -70728843 - MER5A DNA MER1_type -42 147 1 4032 113 4 73 chr13 31144443 31144567 -70728602 - MER41B LTR ERV1 0 635 504 2166 115 7 0 chr13 31144567 31144872 -70728297 + AluSq SINE Alu 3 309 -4 4032 113 4 73 chr13 31144872 31145429 -70727740 - MER41B LTR ERV1 -131 504 1 191 35 0 35 chr13 31145569 31145598 -70727571 + (CCCCCT)n Simple_repeat Simple_repeat 3 30 0 279 346 25 37 chr13 31145673 31145835 -70727334 + L3 LINE CR1 1025 1184 -393 467 335 39 22 chr13 31145863 31146042 -70727127 + L3 LINE CR1 1394 1575 -2 2801 185 30 4 chr13 31146046 31146539 -70726630 + MLT2B2 LTR ERVL 10 515 0 2161 126 47 19 chr13 31148575 31148940 -70724229 + THE1C LTR MaLR 1 375 0 1787 210 68 24 chr13 31149048 31149458 -70723711 + Charlie1a DNA MER1_type 1 428 -1027 785 157 25 0 chr13 31149463 31149584 -70723585 + AluJb SINE Alu 1 124 -188 228 184 0 0 chr13 31149587 31149636 -70723533 + GA-rich Low_complexity Low_complexity 2 50 0 3011 171 62 9 chr13 31149677 31150333 -70722836 + Charlie1a DNA MER1_type 765 1455 0 1031 209 130 0 chr13 31150415 31150645 -70722524 - MIR SINE MIR -2 260 1 2373 72 0 0 chr13 31151456 31151762 -70721407 - AluY SINE Alu -5 306 1 276 161 345 0 chr13 31152122 31152209 -70720960 + MIR3 SINE MIR 85 201 -7 270 247 65 54 chr13 31152426 31152519 -70720650 - L2 LINE L2 -21 3292 3199 358 278 130 18 chr13 31153278 31153447 -70719722 + MLT1L LTR MaLR 119 306 -309 390 208 0 0 chr13 31153448 31153525 -70719644 + L1ME1 LINE L1 5645 5721 -445 3946 152 62 0 chr13 31153546 31154783 -70718386 - pTR5 LTR ERV1 0 2468 1524 2490 106 9 6 chr13 31154783 31155133 -70718036 - THE1B LTR MaLR -13 351 1 1582 236 72 12 chr13 31155134 31155553 -70717616 + L1ME1 LINE L1 5718 6161 -5 507 235 65 144 chr13 31155565 31155673 -70717496 + MLT1L LTR MaLR 284 399 -216 2007 228 69 37 chr13 31155673 31156238 -70716931 + MER119 DNA MER1_type 1 583 0 507 235 65 144 chr13 31156238 31156264 -70716905 + MLT1L LTR MaLR 399 425 -190 1741 98 19 0 chr13 31156264 31156530 -70716639 + L1MA4A LINE L1 6027 6297 -6 507 235 65 144 chr13 31156530 31156700 -70716469 + MLT1L LTR MaLR 425 565 -50 367 283 165 42 chr13 31156711 31157152 -70716017 - L1ME4a LINE L1 -56 6065 5551 608 211 39 26 chr13 31157207 31157363 -70715806 + MLT1L LTR MaLR 163 320 -295 419 232 92 23 chr13 31157634 31157897 -70715272 - L1ME4a LINE L1 -686 5488 5215 234 0 0 0 chr13 31157919 31157945 -70715224 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 515 338 113 23 chr13 31157958 31158435 -70714734 - L1ME4a LINE L1 -1003 5143 4622 231 281 0 0 chr13 31158447 31158504 -70714665 - L1P LINE L1 -1552 4594 4538 458 332 20 84 chr13 31158543 31158841 -70714328 - L1ME4a LINE L1 -1646 4500 4222 231 284 21 21 chr13 31158883 31158978 -70714191 - L1ME4a LINE L1 -3794 2352 2258 2077 111 10 26 chr13 31159025 31159332 -70713837 + AluSx SINE Alu 1 302 -10 213 39 0 0 chr13 31159345 31159371 -70713798 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1934 126 7 0 chr13 31159565 31159858 -70713311 + AluSq SINE Alu 1 295 -18 256 151 430 0 chr13 31160488 31160574 -70712595 - L2 LINE L2 0 3313 3191 508 241 18 85 chr13 31161056 31161311 -70711858 - HAL1b LINE L1 -706 1664 400 847 280 67 93 chr13 31161318 31161811 -70711358 - MLT1K LTR MaLR -23 565 86 207 198 23 105 chr13 31161812 31161898 -70711271 + GA-rich Low_complexity Low_complexity 3 81 0 311 253 141 57 chr13 31161942 31162035 -70711134 - HAL1 LINE L1 -1046 1461 1377 9864 75 9 26 chr13 31162035 31163431 -70709738 - SVA Other Other 0 1386 15 311 253 141 57 chr13 31163431 31163634 -70709535 - HAL1 LINE L1 -1130 1377 1140 335 130 0 0 chr13 31164146 31164192 -70708977 - Alu SINE Alu -256 46 1 2080 89 0 38 chr13 31164735 31165051 -70708118 - AluY SINE Alu -7 304 1 7197 110 180 83 chr13 31165109 31166678 -70706491 + pTR5 LTR ERV1 142 2438 0 220 318 47 73 chr13 31166678 31166870 -70706299 + L2 LINE L2 3027 3213 -100 1246 178 63 49 chr13 31166947 31167234 -70705935 + AluJb SINE Alu 11 301 -11 262 282 35 58 chr13 31169783 31169957 -70703212 - L2 LINE L2 -225 3047 2878 320 252 25 33 chr13 31170152 31170269 -70702900 - MIR SINE MIR -61 147 32 218 192 19 0 chr13 31170291 31170343 -70702826 + (ATGGTG)n Simple_repeat Simple_repeat 1 53 0 683 292 105 0 chr13 31172054 31172273 -70700896 - MIR SINE MIR 0 262 21 2067 82 0 78 chr13 31172274 31172593 -70700576 - AluY SINE Alu -17 294 1 2320 94 0 0 chr13 31172669 31172977 -70700192 - AluSx SINE Alu -4 308 1 184 258 32 32 chr13 31173231 31173293 -70699876 - L3b LINE CR1 -230 1353 1292 2255 98 7 0 chr13 31173343 31173650 -70699519 - AluSg SINE Alu -1 309 1 455 313 8 8 chr13 31173819 31173950 -70699219 - MIR3 SINE MIR -63 145 15 277 327 126 13 chr13 31174017 31174176 -70698993 + MIR3 SINE MIR 23 199 -9 355 263 132 69 chr13 31174824 31175005 -70698164 - MIR3 SINE MIR -9 199 1 382 274 34 48 chr13 31175288 31175434 -70697735 + MIR3 SINE MIR 2 145 -63 1055 254 195 22 chr13 31176777 31176796 -70696373 + L2 LINE L2 2413 2427 -886 1906 145 0 10 chr13 31176796 31177100 -70696069 - AluJo SINE Alu -2 310 10 1055 254 195 22 chr13 31177100 31177692 -70695477 + L2 LINE L2 2427 3189 -124 2148 70 42 0 chr13 31177692 31177976 -70695193 + AluY SINE Alu 1 296 -15 1055 254 195 22 chr13 31177976 31178116 -70695053 + L2 LINE L2 3189 3304 -9 2215 98 0 3 chr13 31178116 31178421 -70694748 + AluSg SINE Alu 1 304 -6 2822 217 121 8 chr13 31178801 31179603 -70693566 + L1ME3A LINE L1 5261 6153 -17 1990 141 0 0 chr13 31179612 31179909 -70693260 - AluSx SINE Alu -15 297 1 531 243 95 0 chr13 31180339 31180487 -70692682 - MER103 DNA DNA -2 164 3 251 91 0 23 chr13 31180490 31180534 -70692635 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 580 244 68 50 chr13 31180569 31180912 -70692257 - MLT1J2 LTR MaLR -10 440 64 336 327 115 56 chr13 31180974 31181313 -70691856 + L2 LINE L2 2895 3253 -19 666 58 0 0 chr13 31181324 31181411 -70691758 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 256 339 0 0 chr13 31181511 31181573 -70691596 + G-rich Low_complexity Low_complexity 5 66 0 818 114 15 0 chr13 31181575 31181707 -70691462 + (GGAA)n Simple_repeat Simple_repeat 3 136 0 1982 114 50 0 chr13 31182086 31182383 -70690786 + AluSx SINE Alu 1 312 0 294 253 27 100 chr13 31182780 31182930 -70690239 + MIR SINE MIR 54 192 -70 2517 49 0 0 chr13 31184056 31184360 -70688809 + AluY SINE Alu 1 304 -7 21 0 0 0 chr13 31184427 31184448 -70688721 + AT_rich Low_complexity Low_complexity 1 21 0 2229 117 0 0 chr13 31185609 31185917 -70687252 + AluSc SINE Alu 1 308 -1 229 322 50 28 chr13 31185966 31186146 -70687023 - L2 LINE L2 -1211 2103 1920 1435 156 28 35 chr13 31187598 31187886 -70685283 - AluJo SINE Alu -20 292 7 397 254 63 16 chr13 31187892 31188018 -70685151 - MIR SINE MIR -115 147 16 573 244 77 18 chr13 31188510 31188678 -70684491 - MIR SINE MIR -70 192 15 2323 93 0 0 chr13 31188823 31189134 -70684035 - AluY SINE Alu 0 311 1 1852 133 0 37 chr13 31189137 31189460 -70683709 - AluJo SINE Alu -1 311 1 1977 101 4 0 chr13 31189469 31189747 -70683422 - AluSc SINE Alu -12 297 19 258 81 0 0 chr13 31189826 31189863 -70683306 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 213 194 0 0 chr13 31191046 31191082 -70682087 + polypurine Low_complexity Low_complexity 2 37 0 1903 149 3 0 chr13 31191182 31191490 -70681679 - AluSx SINE Alu -3 309 1 225 132 0 0 chr13 31191633 31191671 -70681498 + (CA)n Simple_repeat Simple_repeat 2 39 0 274 226 0 21 chr13 31192225 31192318 -70680851 + CT-rich Low_complexity Low_complexity 5 95 0 397 291 111 23 chr13 31192340 31192512 -70680657 - L2 LINE L2 -37 3235 3049 180 274 94 60 chr13 31192624 31192741 -70680428 - MIR3 SINE MIR -75 133 13 234 229 86 0 chr13 31193240 31193310 -70679859 - L2 LINE L2 0 3313 3238 194 263 0 12 chr13 31193978 31194058 -70679111 + GA-rich Low_complexity Low_complexity 2 80 0 422 252 16 16 chr13 31195377 31195500 -70677669 - LTR67 LTR ERVL -1 556 434 1467 240 160 55 chr13 31195942 31196504 -70676665 + MLT1E2 LTR MaLR 6 626 0 216 318 45 0 chr13 31196770 31196836 -70676333 + MIR SINE MIR 132 200 -62 * 419 258 83 23 chr13 31196810 31196942 -70676227 - MIR SINE MIR -121 141 2 396 0 0 0 chr13 31197410 31197454 -70675715 + (CA)n Simple_repeat Simple_repeat 2 45 0 531 269 62 22 chr13 31197530 31197757 -70675412 - L1M4b LINE L1 -6601 258 23 2148 116 3 0 chr13 31198679 31198980 -70674189 + AluSx SINE Alu 1 302 -10 350 341 100 6 chr13 31199175 31199345 -70673824 + MIR3 SINE MIR 15 200 -8 542 227 23 0 chr13 31199545 31199677 -70673492 - MIR SINE MIR 0 262 128 478 298 69 49 chr13 31200631 31200876 -70672293 - MIR SINE MIR 0 262 13 224 277 11 75 chr13 31202338 31202432 -70670737 - MIR SINE MIR -89 173 86 2153 100 3 0 chr13 31202971 31203271 -70669898 - AluY SINE Alu -10 301 1 815 259 161 33 chr13 31203485 31203906 -70669263 - MLT1L LTR MaLR 0 615 141 608 200 168 0 chr13 31205025 31205180 -70667989 - MER5A DNA MER1_type 0 189 9 1104 246 12 4 chr13 31205295 31205551 -70667618 + Charlie1b DNA MER1_type 1 258 -265 4892 138 15 88 chr13 31205575 31205738 -70667431 + L1MB3 LINE L1 5254 5427 -756 2128 97 7 0 chr13 31205738 31206027 -70667142 - AluSp SINE Alu -22 291 1 4892 138 15 88 chr13 31206027 31206599 -70666570 + L1MB3 LINE L1 5427 6039 -144 2940 105 21 2 chr13 31206599 31207019 -70666150 + MSTA LTR MaLR 1 428 0 4892 138 15 88 chr13 31207019 31207242 -70665927 + L1MB3 LINE L1 6039 6140 -43 1840 141 26 13 chr13 31207242 31207548 -70665621 - AluSx SINE Alu -2 310 1 4892 138 15 88 chr13 31207548 31207588 -70665581 + L1MB3 LINE L1 6140 6181 -2 327 381 20 7 chr13 31207773 31207920 -70665249 + MIR3 SINE MIR 4 152 -56 620 214 24 48 chr13 31208013 31208146 -70665023 - MER103 DNA DNA -1 165 35 1112 293 84 11 chr13 31208146 31208600 -70664569 - LTR16C LTR ERVL -2 489 3 620 214 24 48 chr13 31208600 31208634 -70664535 - MER103 DNA DNA -131 35 2 4751 117 3 3 chr13 31209025 31209718 -70663451 + L1PA16 LINE L1 5465 6157 -9 225 65 0 0 chr13 31209720 31209751 -70663418 + (CA)n Simple_repeat Simple_repeat 2 32 0 244 48 48 0 chr13 31209751 31209793 -70663376 + (GA)n Simple_repeat Simple_repeat 1 44 0 248 293 13 0 chr13 31210532 31210607 -70662562 - MER116 DNA Mariner -2 78 3 24 67 0 0 chr13 31210786 31210831 -70662338 + AT_rich Low_complexity Low_complexity 1 45 0 2220 116 3 0 chr13 31210811 31211114 -70662055 - AluSp SINE Alu -9 304 1 1782 166 11 0 chr13 31211245 31211522 -70661647 + AluJb SINE Alu 1 280 -32 728 91 9 0 chr13 31211522 31211559 -70661610 + (GGAA)n Simple_repeat Simple_repeat 1 148 0 728 91 9 0 chr13 31211559 31211669 -70661500 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 887 106 0 8 chr13 31211676 31211808 -70661361 + MER41A LTR ERV1 424 554 0 506 266 106 55 chr13 31212213 31212412 -70660757 + Charlie2 DNA MER1_type 1 209 -2653 2128 141 33 22 chr13 31213181 31213542 -70659627 - MLT1A1 LTR MaLR 0 365 1 256 170 21 0 chr13 31213925 31213972 -70659197 + MLT1K LTR MaLR 509 556 -32 379 354 45 44 chr13 31214308 31214868 -70658301 - L2 LINE L2 -212 3060 2507 215 269 65 11 chr13 31215307 31215400 -70657769 + L2 LINE L2 3173 3270 -2 1584 164 13 50 chr13 31215416 31215537 -70657632 + AluJo SINE Alu 1 125 -187 2206 116 0 3 chr13 31215537 31215831 -70657338 - AluSx SINE Alu -19 293 1 1584 164 13 50 chr13 31215831 31216007 -70657162 + AluJo SINE Alu 125 287 -25 23 33 0 0 chr13 31216330 31216360 -70656809 + AT_rich Low_complexity Low_complexity 1 30 0 2209 132 0 0 chr13 31216892 31217195 -70655974 - AluSx SINE Alu -9 303 1 371 267 14 122 chr13 31218001 31218222 -70654947 + MIR SINE MIR 18 214 -48 1058 261 157 42 chr13 31218690 31219167 -70654002 + MLT1H1 LTR MaLR 20 595 0 249 83 0 0 chr13 31219537 31219573 -70653596 + (TG)n Simple_repeat Simple_repeat 2 37 0 336 304 9 27 chr13 31220266 31220378 -70652791 + MER5B DNA MER1_type 36 145 -33 2084 250 113 50 chr13 31220392 31221489 -70651680 + HAL1 LINE L1 25 1190 -1317 491 298 25 12 chr13 31221647 31221808 -70651361 - MIR SINE MIR -3 259 97 333 0 0 0 chr13 31221886 31221923 -70651246 + (CA)n Simple_repeat Simple_repeat 2 38 0 2174 103 0 3 chr13 31222644 31222962 -70650207 - AluSx SINE Alu 0 320 4 2321 107 0 0 chr13 31222977 31223276 -70649893 - AluSg SINE Alu -11 299 1 1593 201 23 16 chr13 31223778 31224086 -70649083 + AluJb SINE Alu 1 310 -2 435 216 0 59 chr13 31224158 31224260 -70648909 - MIR SINE MIR -94 168 73 218 281 0 16 chr13 31224496 31224560 -70648609 - MIR3 SINE MIR -143 65 3 2210 153 67 34 chr13 31224769 31225071 -70648098 + MSTB1 LTR MaLR 2 323 -109 2458 86 0 0 chr13 31225071 31225373 -70647796 - AluSx SINE Alu -10 302 1 2210 153 67 34 chr13 31225373 31225487 -70647682 + MSTB1 LTR MaLR 323 432 0 364 274 8 129 chr13 31226990 31227087 -70646082 - MIR SINE MIR -12 250 143 1451 113 19 0 chr13 31227087 31227300 -70645869 - AluSg/x SINE Alu -5 305 89 364 274 8 129 chr13 31227300 31227374 -70645795 - MIR SINE MIR -119 143 62 2236 110 0 7 chr13 31227374 31227673 -70645496 + AluSx SINE Alu 2 298 -14 2123 108 17 14 chr13 31227676 31227973 -70645196 + AluSq SINE Alu 1 298 -15 364 274 8 129 chr13 31227973 31228051 -70645118 - MIR SINE MIR -202 60 27 259 306 28 28 chr13 31228176 31228284 -70644885 - L3 LINE CR1 -16 1561 1454 332 339 87 7 chr13 31228687 31228964 -70644205 - L1ME4a LINE L1 -172 5949 5651 2099 88 37 0 chr13 31228984 31229307 -70643862 - AluY SINE Alu 0 333 1 242 252 150 31 chr13 31229528 31229655 -70643514 + MIR3 SINE MIR 5 146 -62 2026 178 16 24 chr13 31229887 31230264 -70642905 - MLT1A2 LTR MaLR 0 374 1 266 263 42 32 chr13 31230378 31230473 -70642696 + MIR SINE MIR 51 146 -116 493 244 0 24 chr13 31230476 31230599 -70642570 - L2 LINE L2 0 3313 3194 2290 88 0 3 chr13 31232312 31232657 -70640512 - AluSq SINE Alu 0 344 1 288 276 98 6 chr13 31232827 31232990 -70640179 - L2 LINE L2 -528 2786 2609 2376 89 0 0 chr13 31233494 31233787 -70639382 + AluSg SINE Alu 1 293 -17 1593 202 48 11 chr13 31234370 31234722 -70638447 + MLT1A1 LTR MaLR 1 365 0 2262 89 17 0 chr13 31235076 31235369 -70637800 + AluSx SINE Alu 3 300 -12 662 308 53 84 chr13 31235610 31235918 -70637251 + L2 LINE L2 2300 2616 -656 1395 186 49 35 chr13 31235918 31236203 -70636966 + AluJo SINE Alu 1 289 -23 2367 98 0 16 chr13 31236212 31236529 -70636640 + AluSx SINE Alu 1 312 0 662 308 53 84 chr13 31236529 31237134 -70636035 + L2 LINE L2 2624 3229 -43 1939 174 66 24 chr13 31237253 31237633 -70635536 - MSTD LTR MaLR 0 396 1 872 269 117 49 chr13 31238277 31238788 -70634381 - L1MC4a LINE L1 -1844 5964 5400 2274 118 3 0 chr13 31238788 31239094 -70634075 + AluSx SINE Alu 1 307 -5 872 269 117 49 chr13 31239094 31239213 -70633956 - L1MC4a LINE L1 -2408 5400 5291 306 73 0 0 chr13 31240172 31240213 -70632956 + (CA)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chr13 31240245 31240273 -70632896 + (TG)n Simple_repeat Simple_repeat 1 28 0 27 62 0 0 chr13 31241796 31241844 -70631325 + GC_rich Low_complexity Low_complexity 1 48 0 330 317 78 0 chr13 31241946 31242113 -70631056 + MIR3 SINE MIR 4 183 -25 194 0 39 0 chr13 31242261 31242287 -70630882 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2345 95 0 10 chr13 31244333 31244468 -70628701 + AluSx SINE Alu 1 136 -176 2469 61 0 3 chr13 31244468 31244765 -70628404 + AluY SINE Alu 1 296 -15 2345 95 0 10 chr13 31244765 31244934 -70628235 + AluSx SINE Alu 136 302 -10 1501 81 58 27 chr13 31244970 31245193 -70627976 - MER30 DNA MER1_type 0 230 1 272 174 43 22 chr13 31246086 31246178 -70626991 + (TA)n Simple_repeat Simple_repeat 2 95 0 395 316 53 29 chr13 31246988 31247159 -70626010 - MER5B DNA MER1_type 0 178 4 350 295 101 0 chr13 31249390 31249519 -70623650 - L2 LINE L2 -8 3264 3123 7211 28 8 0 chr13 31250093 31250930 -70622239 + L1PA4 LINE L1 5309 6152 -3 236 167 64 51 chr13 31250960 31251038 -70622131 + L1MC5 LINE L1 7853 7931 -30 1586 236 204 9 chr13 31251069 31251608 -70621561 - MER20B DNA MER1_type -139 644 1 692 193 47 0 chr13 31252219 31252369 -70620800 + MER5A DNA MER1_type 1 157 -32 2359 56 32 0 chr13 31252370 31252655 -70620514 - AluSc SINE Alu -15 294 1 3263 96 48 16 chr13 31252676 31253176 -70619993 - L1MA4A LINE L1 -6 6297 5782 1199 174 31 10 chr13 31253186 31253382 -70619787 - AluJo SINE Alu -112 200 1 3595 137 31 25 chr13 31253382 31253480 -70619689 - L1M2 LINE L1 -4780 2069 1973 2021 104 20 30 chr13 31253480 31253778 -70619391 - AluSx SINE Alu -17 295 1 3595 137 31 25 chr13 31253778 31254352 -70618817 - L1M2 LINE L1 -4876 1973 1393 561 239 24 54 chr13 31254464 31254631 -70618538 + MER5B DNA MER1_type 3 164 -14 213 235 49 59 chr13 31255585 31255687 -70617482 - L2 LINE L2 -165 3107 3007 584 238 137 54 chr13 31255713 31255844 -70617325 + L2 LINE L2 3013 3132 -181 2068 108 34 0 chr13 31255844 31256141 -70617028 - AluSx SINE Alu -5 307 1 2368 61 0 61 chr13 31256142 31256470 -70616699 - AluY SINE Alu -3 308 1 584 238 137 54 chr13 31256470 31256613 -70616556 + L2 LINE L2 3131 3312 -1 1551 139 131 4 chr13 31256840 31257114 -70616055 - AluSx SINE Alu -3 309 1 1850 170 0 3 chr13 31257372 31257666 -70615503 + AluJb SINE Alu 4 296 -16 445 315 73 23 chr13 31257740 31257959 -70615210 - L3 LINE CR1 -101 1476 1247 264 346 157 19 chr13 31258512 31258824 -70614345 - L3 LINE CR1 -323 1254 900 27361 87 13 8 chr13 31259017 31265406 -70607763 + L1PA7 LINE L1 12 6466 -3 1441 123 106 49 chr13 31265401 31265751 -70607418 + L1MA3 LINE L1 5936 6305 0 * 258 361 0 0 chr13 31265759 31265878 -70607291 + L1M4 LINE L1 3717 3835 -2311 27 62 0 0 chr13 31266144 31266192 -70606977 + AT_rich Low_complexity Low_complexity 1 48 0 937 110 55 22 chr13 31268878 31269060 -70604109 + L1MB3 LINE L1 5994 6181 -2 523 254 6 73 chr13 31269575 31269752 -70603417 - L2 LINE L2 0 3313 3149 2368 74 0 0 chr13 31269899 31270203 -70602966 + AluY SINE Alu 1 304 0 2109 171 110 79 chr13 31270205 31270608 -70602561 - L1ME1 LINE L1 -5 6161 5723 1770 130 76 0 chr13 31270608 31270884 -70602285 - AluSx SINE Alu -15 297 1 2109 171 110 79 chr13 31270884 31271216 -70601953 - L1ME1 LINE L1 -443 5723 5403 1996 179 128 96 chr13 31271225 31271842 -70601327 - L1ME1 LINE L1 -856 5290 4695 2447 70 0 10 chr13 31271842 31272156 -70601013 - AluY SINE Alu 0 311 1 1996 179 128 96 chr13 31272156 31272179 -70600990 - L1ME1 LINE L1 -1451 4695 4674 561 168 67 25 chr13 31272179 31272298 -70600871 - FLAM_C SINE Alu -8 125 2 1996 179 128 96 chr13 31272298 31272446 -70600723 - L1ME1 LINE L1 -1472 4674 4532 2105 98 45 11 chr13 31272446 31272733 -70600436 - AluSx SINE Alu -15 297 1 1996 179 128 96 chr13 31272733 31272822 -70600347 - L1ME1 LINE L1 -1614 4532 4382 2246 90 7 13 chr13 31273266 31273576 -70599593 - AluSq SINE Alu -5 308 1 305 291 51 25 chr13 31273629 31273787 -70599382 + L1M4 LINE L1 4425 4586 -1560 1619 141 81 32 chr13 31273796 31274079 -70599090 - AluJb SINE Alu -15 297 1 736 260 213 24 chr13 31274079 31274540 -70598629 - L1ME3A LINE L1 -41 6129 5582 2032 166 74 3 chr13 31274540 31274931 -70598238 + MSTA LTR MaLR 1 419 -9 6318 83 2 7 chr13 31275133 31276055 -70597114 - L1P LINE L1 -1206 4940 4023 514 203 62 0 chr13 31276198 31276326 -70596843 - MIR SINE MIR -18 244 109 2250 100 7 0 chr13 31276359 31276648 -70596521 - AluSq SINE Alu -22 291 1 293 315 56 0 chr13 31276710 31276857 -70596312 + MIR SINE MIR 33 141 -67 575 319 83 11 chr13 31276916 31277314 -70595855 - MLT1L LTR MaLR -13 602 70 199 230 54 40 chr13 31277962 31278036 -70595133 - L2 LINE L2 0 3272 3198 2130 120 3 3 chr13 31278357 31278648 -70594521 + AluSx SINE Alu 1 291 -21 255 79 0 0 chr13 31278788 31278826 -70594343 + (CA)n Simple_repeat Simple_repeat 2 39 0 306 249 114 85 chr13 31278840 31279041 -70594128 - L1MC4a LINE L1 -1913 5895 5689 188 263 26 97 chr13 31279041 31279155 -70594014 + MIR SINE MIR 155 260 -2 270 275 53 0 chr13 31279340 31279471 -70593698 - L1ME3A LINE L1 -2336 5472 5335 2084 102 27 17 chr13 31280480 31280774 -70592395 - AluSq SINE Alu -16 297 1 253 272 114 50 chr13 31283493 31283695 -70589474 - L2 LINE L2 -214 3058 2844 291 28 0 0 chr13 31283727 31283763 -70589406 + (TG)n Simple_repeat Simple_repeat 2 37 0 266 383 33 33 chr13 31286550 31286733 -70586436 + MER5A DNA MER1_type 6 188 -1 1532 153 80 28 chr13 31286819 31287106 -70586063 + AluJo SINE Alu 1 302 -10 263 270 0 0 chr13 31287220 31287283 -70585886 + MIR3 SINE MIR 131 193 -15 481 234 97 8 chr13 31287646 31287770 -70585399 + L2 LINE L2 3179 3313 0 189 0 0 0 chr13 31288226 31288247 -70584922 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1909 162 7 7 chr13 31288250 31288559 -70584610 + AluJo SINE Alu 1 309 -3 180 0 0 0 chr13 31288620 31288640 -70584529 + (A)n Simple_repeat Simple_repeat 1 20 0 923 189 13 0 chr13 31288765 31288924 -70584245 + FAM SINE Alu 9 169 -16 180 250 36 107 chr13 31289027 31289111 -70584058 - L2 LINE L2 -16 3297 3220 275 252 166 26 chr13 31290052 31290203 -70582966 - MIR SINE MIR -71 191 20 2387 63 7 3 chr13 31290567 31290868 -70582301 + AluY SINE Alu 1 302 -9 254 167 192 0 chr13 31291362 31291440 -70581729 - MER46C DNA MER2_type -1 337 245 422 206 0 0 chr13 31291447 31291520 -70581649 + Tigger7 DNA MER2_type 2 74 -476 555 140 348 0 chr13 31291524 31291688 -70581481 + Tigger7 DNA MER2_type 2271 2491 0 288 270 34 0 chr13 31291688 31291777 -70581392 - MER46C DNA MER2_type -99 239 148 192 77 0 0 chr13 31291817 31291843 -70581326 + (CA)n Simple_repeat Simple_repeat 1 26 0 719 260 51 5 chr13 31291887 31292083 -70581086 - MIR SINE MIR -57 205 1 2256 110 7 3 chr13 31292846 31293145 -70580024 + AluSg SINE Alu 1 300 -10 365 235 37 66 chr13 31293250 31293386 -70579783 + MIR SINE MIR 13 144 -118 1491 143 9 13 chr13 31294273 31294503 -70578666 + AluJb SINE Alu 3 231 -81 864 206 0 29 chr13 31294519 31294694 -70578475 + FRAM SINE Alu 1 170 -6 2033 108 36 33 chr13 31295563 31295868 -70577301 - AluSx SINE Alu -6 306 1 2481 62 13 3 chr13 31298458 31298766 -70574403 - AluSp SINE Alu -2 311 1 1458 167 40 67 chr13 31299378 31299508 -70573661 + L1MD1 LINE L1 1 133 -6407 1527 179 3 89 chr13 31299508 31299833 -70573336 + AluJo SINE Alu 1 297 -15 1458 167 40 67 chr13 31299833 31300073 -70573096 + L1MD1 LINE L1 133 361 -6179 1707 156 47 7 chr13 31300075 31300351 -70572818 + AluJo SINE Alu 1 287 -25 2584 220 70 74 chr13 31300388 31300702 -70572467 + L1MD1 LINE L1 3461 3775 -2765 1624 191 58 0 chr13 31300702 31300822 -70572347 + AluJb SINE Alu 1 113 -199 225 83 0 0 chr13 31300822 31300858 -70572311 + (TTAAA)n Simple_repeat Simple_repeat 3 38 0 1624 191 58 0 chr13 31300858 31301030 -70572139 + AluJb SINE Alu 113 310 -2 2584 220 70 74 chr13 31301030 31302006 -70571163 + L1MD1 LINE L1 3775 4746 -1794 1299 220 79 66 chr13 31302029 31302402 -70570767 + L1MD1 LINE L1 5033 5419 -1121 1663 204 0 7 chr13 31302402 31302701 -70570468 + AluJo SINE Alu 1 297 -15 1299 220 79 66 chr13 31302701 31302932 -70570237 + L1MD1 LINE L1 5419 5645 -895 355 245 75 9 chr13 31302937 31303043 -70570126 + L1MD1 LINE L1 6358 6470 -166 1221 204 69 11 chr13 31303052 31303312 -70569857 - AluJo SINE Alu -16 296 22 662 169 104 7 chr13 31303312 31303466 -70569703 + L1MD1 LINE L1 6461 6629 -7 1471 177 15 15 chr13 31303472 31303732 -70569437 - AluJb SINE Alu -15 297 38 1774 162 14 0 chr13 31303765 31304055 -70569114 + AluJb SINE Alu 1 294 -18 22 35 0 0 chr13 31304130 31304159 -70569010 + AT_rich Low_complexity Low_complexity 1 29 0 1113 178 78 25 chr13 31305783 31305921 -70567248 - MER33 DNA MER1_type -2283 302 173 1849 160 6 16 chr13 31305921 31306234 -70566935 + AluJo SINE Alu 1 310 -2 1113 178 78 25 chr13 31306234 31306376 -70566793 - MER33 DNA MER1_type -2412 173 7 270 189 38 0 chr13 31306809 31306862 -70566307 - MIR SINE MIR -115 147 93 238 248 55 55 chr13 31307260 31307369 -70565800 + MIR SINE MIR 105 213 -49 260 205 108 0 chr13 31307595 31307678 -70565491 + L1MD3 LINE L1 7881 7972 -23 192 40 0 0 chr13 31307693 31307718 -70565451 + (CA)n Simple_repeat Simple_repeat 2 26 0 799 194 6 24 chr13 31308939 31309104 -70564065 + MER20 DNA MER1_type 6 167 -52 280 215 0 15 chr13 31309238 31309303 -70563866 - L2 LINE L2 -2 3311 3248 1986 140 0 10 chr13 31309306 31309606 -70563563 - AluJo SINE Alu -13 299 3 1995 113 18 0 chr13 31310572 31310846 -70562323 + AluSx SINE Alu 25 303 -9 858 186 6 34 chr13 31311487 31311664 -70561505 + AluJb SINE Alu 137 308 -4 288 250 223 47 chr13 31312495 31312643 -70560526 - L2 LINE L2 -6 3266 3093 342 296 96 0 chr13 31312833 31312958 -70560211 - MIR SINE MIR -10 252 116 299 331 61 14 chr13 31313091 31313239 -70559930 + MIR SINE MIR 82 236 -26 456 258 32 8 chr13 31313273 31313397 -70559772 + MIR SINE MIR 90 216 -46 29 70 0 0 chr13 31313546 31313603 -70559566 + AT_rich Low_complexity Low_complexity 1 57 0 1989 109 10 20 chr13 31314061 31314363 -70558806 - AluSx SINE Alu -13 299 1 340 202 0 21 chr13 31315553 31315647 -70557522 + MER53 DNA DNA 98 189 0 530 118 0 0 chr13 31316043 31316119 -70557050 - AluS SINE Alu -13 299 224 2089 124 3 19 chr13 31316611 31316918 -70556251 + AluSc SINE Alu 1 302 -7 1751 108 0 4 chr13 31317312 31317553 -70555616 + AluSg/x SINE Alu 68 307 -5 1919 141 38 0 chr13 31318513 31318804 -70554365 + AluSx SINE Alu 1 302 -10 265 269 43 0 chr13 31319610 31319710 -70553459 - MIR SINE MIR -57 151 83 341 281 49 0 chr13 31319942 31320024 -70553145 + L2 LINE L2 3149 3234 -38 992 168 0 0 chr13 31321254 31321403 -70551766 + FRAM SINE Alu 1 144 -32 430 197 0 0 chr13 31322293 31322369 -70550800 - L2 LINE L2 -10 3303 3228 1766 139 78 24 chr13 31323299 31323557 -70549612 + AluSx SINE Alu 1 278 -34 222 62 0 0 chr13 31323557 31323589 -70549580 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 1766 139 78 24 chr13 31323589 31323625 -70549544 + AluSx SINE Alu 278 311 -1 1967 141 0 26 chr13 31323780 31324093 -70549076 + AluJb SINE Alu 1 305 -7 1027 235 0 14 chr13 31324409 31324626 -70548543 - MER20 DNA MER1_type -4 215 2 2625 58 0 3 chr13 31324763 31325075 -70548094 + AluY SINE Alu 1 311 0 234 0 0 0 chr13 31325077 31325103 -70548066 + (TA)n Simple_repeat Simple_repeat 2 27 0 865 129 0 16 chr13 31326852 31326976 -70546193 - FLAM_C SINE Alu -11 122 1 22 0 0 0 chr13 31326982 31327004 -70546165 + AT_rich Low_complexity Low_complexity 1 22 0 673 281 151 30 chr13 31328330 31328661 -70544508 - L2 LINE L2 -505 2809 2439 220 231 179 0 chr13 31328810 31328888 -70544281 + L2 LINE L2 1883 1974 -1340 211 292 161 84 chr13 31328944 31329588 -70543581 + L2 LINE L2 2128 2821 -493 1968 88 8 4 chr13 31329589 31329852 -70543317 - AluSg SINE Alu -46 264 1 367 231 0 0 chr13 31329852 31329917 -70543252 - MER5A DNA MER1_type -121 68 4 1278 222 107 59 chr13 31329920 31330464 -70542705 + L1ME3 LINE L1 5591 6160 -2 433 309 77 13 chr13 31330741 31330972 -70542197 + L2 LINE L2 2794 3045 -268 301 238 58 165 chr13 31331981 31332326 -70540843 + L1M2 LINE L1 752 1059 -5790 1167 239 94 76 chr13 31332922 31333646 -70539523 - L1M4 LINE L1 -1353 4793 4057 326 196 152 11 chr13 31333647 31333739 -70539430 - L1M4 LINE L1 -2210 3936 3832 1517 178 165 0 chr13 31333761 31334149 -70539020 - LTR32 LTR ERVL -7 464 13 529 194 182 12 chr13 31334239 31334409 -70538760 + L1ME LINE L1 5381 5579 -585 6516 85 11 27 chr13 31335104 31336301 -70536868 - L1PA7 LINE L1 -3 6151 4960 15914 91 0 2 chr13 31336301 31338641 -70534528 + L1P LINE L1 2407 4743 -1403 302 238 12 48 chr13 31339233 31339317 -70533852 + MER21B LTR ERV1 3 83 -780 2125 100 0 0 chr13 31340272 31340553 -70532616 - AluSx SINE Alu -26 286 6 1098 142 39 34 chr13 31340897 31341102 -70532067 - AluJo SINE Alu -106 206 1 303 173 254 9 chr13 31341102 31341212 -70531957 - L1MB8 LINE L1 -269 5909 5773 5259 102 66 19 chr13 31341222 31342159 -70531010 - L1MA4A LINE L1 -1 7004 6024 937 195 0 0 chr13 31342172 31342331 -70530838 - AluJb SINE Alu -23 289 131 242 29 29 0 chr13 31342347 31342382 -70530787 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 437 171 0 13 chr13 31342386 31342462 -70530707 - AluJb SINE Alu -54 258 184 1402 182 115 7 chr13 31342463 31342732 -70530437 - AluJo SINE Alu -14 298 1 3012 190 28 9 chr13 31342732 31343407 -70529762 - L1MA4A LINE L1 -815 6033 5346 1961 137 7 0 chr13 31343520 31343813 -70529356 - AluSx SINE Alu -17 295 1 9364 178 13 30 chr13 31343813 31344834 -70528335 - L1MA4A LINE L1 -1844 5004 3967 1810 180 0 10 chr13 31344834 31345139 -70528030 - AluJo SINE Alu -8 304 3 9364 178 13 30 chr13 31345139 31345525 -70527644 - L1MA4A LINE L1 -2881 3967 3576 1895 161 0 10 chr13 31345525 31345816 -70527353 - AluJo SINE Alu -24 288 1 9364 178 13 30 chr13 31345816 31346373 -70526796 - L1MA4A LINE L1 -3272 3576 3090 2226 106 0 3 chr13 31346373 31346676 -70526493 - AluSg SINE Alu -8 302 1 9364 178 13 30 chr13 31346676 31347195 -70525974 - L1MA4A LINE L1 -3758 3090 2564 3161 216 90 35 chr13 31347197 31348220 -70524949 + L1M4 LINE L1 4015 5093 -1053 1455 230 84 94 chr13 31348220 31348847 -70524322 - L1MCa LINE L1 -5784 642 22 1204 196 56 11 chr13 31348853 31349139 -70524030 - L1MB8 LINE L1 -567 5599 5301 928 123 31 6 chr13 31349176 31349338 -70523831 - L1MA6 LINE L1 -6 6294 6129 201 149 15 90 chr13 31350604 31350671 -70522498 + A-rich Low_complexity Low_complexity 4 65 0 3070 260 37 32 chr13 31352558 31353616 -70519553 - L1PA12 LINE L1 -5204 2380 10 2404 80 7 0 chr13 31354020 31354321 -70518848 + AluY SINE Alu 1 303 -8 779 254 11 77 chr13 31354335 31354595 -70518574 + MLT1H LTR MaLR 72 314 -235 1383 118 48 0 chr13 31354650 31354879 -70518290 - L1MA5 LINE L1 -6 6294 6055 2813 196 17 39 chr13 31354885 31355898 -70517271 - L1 LINE L1 -3529 3259 2273 1856 163 7 13 chr13 31355898 31356198 -70516971 - AluSg SINE Alu -12 298 1 2813 196 17 39 chr13 31356198 31356317 -70516852 - L1 LINE L1 -4515 2273 2153 463 117 25 75 chr13 31356318 31356340 -70516829 - L1 LINE L1 -4851 1938 1916 285 29 0 0 chr13 31356340 31356374 -70516795 + (TA)n Simple_repeat Simple_repeat 1 34 0 1796 179 3 0 chr13 31356375 31356665 -70516504 - AluSx SINE Alu -21 291 1 463 117 25 75 chr13 31356665 31356760 -70516409 - L1 LINE L1 -4872 1917 1825 2390 65 3 37 chr13 31357257 31357579 -70515590 + AluY SINE Alu 1 311 0 432 0 0 0 chr13 31357579 31357627 -70515542 + (TA)n Simple_repeat Simple_repeat 2 49 0 2208 126 0 0 chr13 31358265 31358574 -70514595 - AluSg SINE Alu -1 309 1 6376 95 8 8 chr13 31358584 31359710 -70513459 - L1PA11 LINE L1 0 6174 5052 359 195 39 0 chr13 31359719 31359796 -70513373 - L1PA13 LINE L1 -5005 1782 1703 888 225 112 78 chr13 31360457 31360831 -70512338 + L1ME3A LINE L1 5779 6165 -5 2380 101 0 0 chr13 31360898 31361196 -70511973 + AluSg SINE Alu 1 298 -12 634 278 78 72 chr13 31361213 31361420 -70511749 + L1MC/D LINE L1 4798 5002 -1359 1429 175 36 68 chr13 31361420 31361728 -70511441 - AluJo SINE Alu -14 298 1 634 278 78 72 chr13 31361728 31362079 -70511090 + L1MC/D LINE L1 5002 5363 -998 1890 118 79 0 chr13 31362079 31362358 -70510811 + AluSg SINE Alu 1 301 -9 634 278 78 72 chr13 31362358 31362616 -70510553 + L1MC/D LINE L1 5363 5618 -743 3189 138 41 18 chr13 31362787 31363401 -70509768 + MER11A LTR ERVK 638 1265 -1 210 241 35 0 chr13 31366173 31366231 -70506938 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 213 39 0 0 chr13 31367571 31367597 -70505572 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 183 0 24 chr13 31367601 31367683 -70505486 + (TA)n Simple_repeat Simple_repeat 2 81 0 301 302 0 38 chr13 31367689 31367795 -70505374 + L1MC4 LINE L1 6614 6715 -1327 213 202 12 24 chr13 31367841 31367925 -70505244 + (TA)n Simple_repeat Simple_repeat 1 83 0 5857 140 48 56 chr13 31367941 31368121 -70505048 + Tigger1 DNA MER2_type 1 181 -2237 2176 91 3 0 chr13 31368121 31368407 -70504762 - AluSg SINE Alu -23 287 1 5857 140 48 56 chr13 31368407 31369418 -70503751 + Tigger1 DNA MER2_type 181 1182 -1236 7386 178 38 122 chr13 31369419 31372679 -70500490 + L1M2c LINE L1 14 2745 -4043 2215 113 0 0 chr13 31372679 31372979 -70500190 + AluY SINE Alu 3 302 -9 7386 178 38 122 chr13 31372979 31374397 -70498772 + L1M2c LINE L1 2745 4281 -2507 2968 151 2 8 chr13 31374402 31374912 -70498257 + Tigger1 DNA MER2_type 1911 2417 -1 368 252 115 3 chr13 31376836 31377035 -70496134 - L1MC/D LINE L1 -364 5757 5609 2103 114 27 3 chr13 31377935 31378234 -70494935 - AluSc SINE Alu -3 306 1 355 295 74 19 chr13 31378777 31379035 -70494134 - HAL1b LINE L1 -609 739 468 5234 105 8 21 chr13 31379482 31379819 -70493350 - L1PA14 LINE L1 -2 6159 5819 2268 89 0 10 chr13 31379819 31380121 -70493048 - AluY SINE Alu -12 299 1 5234 105 8 21 chr13 31380121 31380622 -70492547 - L1PA14 LINE L1 -342 5819 5332 200 246 18 35 chr13 31381076 31381133 -70492036 - MIR SINE MIR -62 146 91 1881 143 0 0 chr13 31381632 31381905 -70491264 + AluSx SINE Alu 1 273 -39 213 121 0 0 chr13 31383030 31383063 -70490106 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2039 93 0 0 chr13 31383281 31383538 -70489631 + AluSg SINE Alu 33 289 -21 13289 136 36 18 chr13 31383563 31385878 -70487291 + L1MA2 LINE L1 1252 3635 -3930 2240 117 0 0 chr13 31385878 31386186 -70486983 + AluSc SINE Alu 1 308 -1 13289 136 36 18 chr13 31386186 31386440 -70486729 + L1MA2 LINE L1 3635 3883 -3682 8704 155 25 10 chr13 31386463 31386636 -70486533 + L1MA2 LINE L1 4943 5112 -2611 2153 132 3 0 chr13 31386636 31386940 -70486229 + AluSx SINE Alu 1 305 -7 8704 155 25 10 chr13 31386940 31389431 -70483738 + L1MA2 LINE L1 5112 7651 -72 306 150 67 0 chr13 31390132 31390192 -70482977 + U2 snRNA snRNA 6 69 -119 1791 15 0 0 chr13 31390382 31390586 -70482583 - L1PA2 LINE L1 -2 6153 5950 2179 128 3 3 chr13 31390594 31390906 -70482263 - AluSx SINE Alu 0 312 1 666 233 33 61 chr13 31391290 31391470 -70481699 + MER5A DNA MER1_type 14 188 -1 414 0 0 0 chr13 31391616 31391668 -70481501 - L1PA2 LINE L1 -154 6001 5950 2195 125 3 3 chr13 31391676 31391988 -70481181 - AluSx SINE Alu 0 312 1 622 221 40 47 chr13 31392372 31392521 -70480648 + MER5A DNA MER1_type 14 161 -28 788 169 4 161 chr13 31392786 31393046 -70480123 - MER20 DNA MER1_type 0 219 1 516 181 24 127 chr13 31394399 31394565 -70478604 - MLT1H LTR MaLR -22 527 379 2267 235 20 46 chr13 31394669 31395410 -70477759 + L1M2c LINE L1 1193 1952 -4837 1796 179 3 0 chr13 31395410 31395700 -70477469 + AluSx SINE Alu 1 291 -21 432 0 0 0 chr13 31395701 31395749 -70477420 + (TA)n Simple_repeat Simple_repeat 1 48 0 2267 235 20 46 chr13 31395749 31395771 -70477398 + L1M2c LINE L1 1917 1938 -4851 2866 185 18 44 chr13 31395772 31395891 -70477278 + L1M2c LINE L1 2153 2274 -4514 1933 156 7 13 chr13 31395891 31396192 -70476977 + AluSg SINE Alu 1 299 -11 2866 185 18 44 chr13 31396192 31397209 -70475960 + L1M2c LINE L1 2274 3259 -3529 1166 109 57 0 chr13 31397215 31397408 -70475761 + L1MA5 LINE L1 6055 6258 -42 774 256 11 75 chr13 31397486 31397752 -70475417 - MLT1H LTR MaLR -228 321 73 2419 79 0 7 chr13 31397767 31398071 -70475098 - AluY SINE Alu -9 302 1 40975 32 22 0 chr13 31398417 31404434 -70468735 + L1PA2 LINE L1 2 6155 0 3094 259 37 33 chr13 31404505 31405527 -70467642 + L1PA12 LINE L1 10 1035 -6546 6118 95 9 6 chr13 31405547 31407210 -70465959 + L1PA11 LINE L1 4452 6157 -17 304 232 42 0 chr13 31407218 31407325 -70465844 - L1ME3 LINE L1 -3 6159 6049 2474 261 80 36 chr13 31407326 31407706 -70465463 - L1M4 LINE L1 -1138 5008 4646 351 0 0 0 chr13 31407706 31407745 -70465424 + (CA)n Simple_repeat Simple_repeat 2 40 0 2474 261 80 36 chr13 31407745 31407909 -70465260 - L1M4 LINE L1 -1500 4646 4491 2308 82 3 3 chr13 31407909 31408201 -70464968 - AluY SINE Alu -15 296 5 2474 261 80 36 chr13 31408201 31408344 -70464825 - L1M4 LINE L1 -1655 4491 4356 6609 63 7 0 chr13 31408344 31409982 -70463187 - L1PA8 LINE L1 -9 6163 4508 1295 164 103 46 chr13 31409986 31410267 -70462902 - AluJo SINE Alu -15 297 1 2474 261 80 36 chr13 31410267 31410865 -70462304 - L1M4 LINE L1 -1792 4354 3660 1768 5 0 0 chr13 31412534 31412734 -70460435 + L1PA2 LINE L1 5956 6155 0 573 152 0 20 chr13 31413144 31413295 -70459874 + (TA)n Simple_repeat Simple_repeat 1 148 0 2333 95 3 0 chr13 31413396 31413702 -70459467 - AluSg SINE Alu -3 307 1 310 247 0 0 chr13 31413917 31413990 -70459179 - L1ME LINE L1 -474 5647 5575 28695 41 4 2 chr13 31416039 31419751 -70453418 - L1P LINE L1 -2423 3723 7 290 333 20 0 chr13 31420459 31420558 -70452611 + GA-rich Low_complexity Low_complexity 2 102 0 4982 155 45 13 chr13 31420684 31422152 -70451017 - L1MA8 LINE L1 0 6291 4774 293 242 127 72 chr13 31422992 31423131 -70450038 - L1ME LINE L1 -847 5299 5169 1864 153 0 7 chr13 31423131 31423419 -70449750 - AluJb SINE Alu -21 291 6 293 242 127 72 chr13 31423419 31423680 -70449489 - L1ME LINE L1 -977 5169 4877 355 268 21 7 chr13 31423791 31423933 -70449236 - L1ME LINE L1 -1454 4692 4549 23 0 0 0 chr13 31423973 31423996 -70449173 + AT_rich Low_complexity Low_complexity 1 23 0 911 281 105 20 chr13 31424073 31424127 -70449042 - L1ME LINE L1 -399 5763 5715 2125 105 14 0 chr13 31424127 31424421 -70448748 - AluSx SINE Alu -14 298 1 911 281 105 20 chr13 31424421 31425405 -70447764 - L1ME LINE L1 -447 5715 4637 * 4895 97 4 0 chr13 31425403 31426116 -70447053 + L1P LINE L1 572 1287 -4859 10980 37 0 0 chr13 31426120 31428262 -70444907 + L1PA5 LINE L1 4030 6150 -4 2598 244 94 60 chr13 31428296 31428609 -70444560 - L1ME LINE L1 -1538 4608 4307 1795 155 6 32 chr13 31428609 31428925 -70444244 - AluJb SINE Alu -4 308 1 2598 244 94 60 chr13 31428925 31429161 -70444008 - L1ME LINE L1 -1839 4307 4081 261 0 0 0 chr13 31429161 31429190 -70443979 + (TG)n Simple_repeat Simple_repeat 1 29 0 2598 244 94 60 chr13 31429190 31429221 -70443948 - L1ME LINE L1 -2065 4081 4053 1711 162 44 3 chr13 31429221 31429518 -70443651 + AluSg SINE Alu 1 309 -1 2598 244 94 60 chr13 31429518 31430282 -70442887 - L1ME LINE L1 -2093 4053 3317 2306 71 0 0 chr13 31430282 31430596 -70442573 + AluY SINE Alu 1 314 0 2598 244 94 60 chr13 31430596 31430981 -70442188 - L1ME LINE L1 -2829 3317 2798 2382 81 3 0 chr13 31430981 31431279 -70441890 + AluSp SINE Alu 1 299 -14 2598 244 94 60 chr13 31431279 31431495 -70441674 - L1ME LINE L1 -3348 2798 2591 706 276 36 23 chr13 31431735 31432043 -70441126 - L1ME LINE L1 -1998 4148 3837 2486 43 0 3 chr13 31432053 31432352 -70440817 - AluY SINE Alu -13 298 1 11786 194 36 12 chr13 31432433 31437868 -70435301 - L1PA16 LINE L1 -9 6860 1307 2553 148 12 0 chr13 31437875 31438280 -70434889 - L1PA16 LINE L1 -6437 412 3 423 337 98 25 chr13 31438281 31438607 -70434562 - L1ME LINE L1 -2322 3824 3475 568 137 21 0 chr13 31438610 31438705 -70434464 + AluSg/x SINE Alu 204 300 -12 578 183 92 12 chr13 31439051 31439215 -70433954 + MER96B DNA MER1_type? 3 179 -238 339 272 0 11 chr13 31439724 31439816 -70433353 - MER112 DNA MER1_type -8 252 162 2331 102 3 0 chr13 31439817 31440121 -70433048 + AluSp SINE Alu 1 305 -8 563 282 16 43 chr13 31440268 31440456 -70432713 + MIR3 SINE MIR 23 205 -3 1995 129 14 7 chr13 31440534 31440828 -70432341 + AluSx SINE Alu 1 296 -16 405 0 0 0 chr13 31441436 31441481 -70431688 + (TG)n Simple_repeat Simple_repeat 1 45 0 846 203 53 123 chr13 31441650 31442197 -70430972 - L1MC5 LINE L1 -48 7913 7405 509 254 23 8 chr13 31442197 31442327 -70430842 - MIR SINE MIR -42 220 89 2217 109 10 0 chr13 31443669 31443972 -70429197 - AluSx SINE Alu -6 306 1 221 351 69 15 chr13 31446132 31446263 -70426906 + L3b LINE CR1 1125 1262 -321 182 189 38 0 chr13 31446472 31446578 -70426591 + (TA)n Simple_repeat Simple_repeat 2 111 0 2009 120 4 7 chr13 31446601 31446877 -70426292 - AluSx SINE Alu -37 275 1 413 335 27 21 chr13 31447416 31447604 -70425565 - MER5A DNA MER1_type 0 189 1 218 365 113 4 chr13 31448070 31448300 -70424869 + L2 LINE L2 2393 2647 -667 266 235 195 40 chr13 31448388 31448537 -70424632 + MIR SINE MIR 81 252 -10 542 222 17 0 chr13 31448785 31448902 -70424267 - AluJb SINE Alu -4 308 190 904 161 0 0 chr13 31448904 31449041 -70424128 - FLAM_C SINE Alu -6 137 1 2442 70 0 6 chr13 31449268 31449580 -70423589 - AluY SINE Alu -1 310 1 2077 127 14 0 chr13 31450184 31450475 -70422694 + AluSx SINE Alu 5 299 -13 396 59 0 0 chr13 31450475 31450526 -70422643 + (TA)n Simple_repeat Simple_repeat 1 51 0 809 125 8 0 chr13 31451199 31451319 -70421850 - FRAM SINE Alu -28 148 28 3087 187 37 3 chr13 31451319 31451917 -70421252 + MER54A LTR ERVL 284 901 0 2321 101 7 0 chr13 31452903 31453201 -70419968 + AluSx SINE Alu 1 300 -12 992 24 81 0 chr13 31453952 31454076 -70419093 - MER85 DNA T2_type -2 137 4 1299 98 12 0 chr13 31455450 31455614 -70417555 - AluSg/x SINE Alu -15 295 130 1982 162 0 3 chr13 31455622 31455931 -70417238 - AluSx SINE Alu -4 308 1 2095 143 13 0 chr13 31456037 31456337 -70416832 - AluSx SINE Alu -8 304 1 17294 89 1 0 chr13 31456543 31459075 -70414094 - L1PA7 LINE L1 -1207 4939 2407 6525 78 7 16 chr13 31459075 31460264 -70412905 + L1PA7 LINE L1 4960 6150 -4 248 247 54 21 chr13 31462161 31462254 -70410915 + MIR SINE MIR 35 130 -78 2246 106 0 7 chr13 31464054 31464357 -70408812 - AluSx SINE Alu -11 301 1 1112 96 0 7 chr13 31464357 31464503 -70408666 - AluSq/x SINE Alu -167 145 1 778 224 0 0 chr13 31464667 31464810 -70408359 + FRAM SINE Alu 4 146 -30 351 0 0 0 chr13 31464814 31464853 -70408316 + (CA)n Simple_repeat Simple_repeat 2 40 0 876 178 12 0 chr13 31465261 31465424 -70407745 + AluJb SINE Alu 134 298 -14 209 200 247 35 chr13 31465445 31465530 -70407639 + MIR SINE MIR 21 123 -139 273 326 31 39 chr13 31465925 31466054 -70407115 - MIR SINE MIR -129 133 6 1951 124 0 22 chr13 31466810 31467124 -70406045 + AluSq SINE Alu 1 307 -6 900 235 68 56 chr13 31467279 31467526 -70405643 - MLT1L LTR MaLR -210 405 151 1339 230 46 9 chr13 31467526 31467852 -70405317 - MER58B DNA MER1_type -3 338 1 900 235 68 56 chr13 31467852 31467944 -70405225 - MLT1L LTR MaLR -464 151 62 2312 87 0 6 chr13 31468302 31468614 -70404555 + AluY SINE Alu 2 311 0 733 310 58 49 chr13 31468853 31469401 -70403768 - LTR67 LTR ERVL -3 554 2 236 237 140 18 chr13 31469413 31469527 -70403642 - L2 LINE L2 -304 2968 2841 1612 163 25 3 chr13 31469600 31469883 -70403286 - AluJo SINE Alu -21 291 3 203 88 29 0 chr13 31470063 31470097 -70403072 + (TC)n Simple_repeat Simple_repeat 2 36 0 1632 152 0 60 chr13 31470561 31470876 -70402293 - AluJo SINE Alu -15 297 2 581 272 116 13 chr13 31471422 31471646 -70401523 + MIR SINE MIR 16 262 0 509 111 12 12 chr13 31471792 31471873 -70401296 - FLAM SINE Alu -18 125 45 479 258 0 75 chr13 31471900 31472059 -70401110 - L2 LINE L2 -1 3312 3166 261 323 81 16 chr13 31472062 31472186 -70400983 + L2 LINE L2 3140 3271 -1 248 300 133 52 chr13 31472190 31472423 -70400746 - L2 LINE L2 -163 3150 2899 1284 159 58 39 chr13 31473618 31473875 -70399294 - AluJb SINE Alu -19 293 32 225 94 0 0 chr13 31473945 31473977 -70399192 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 2269 69 0 23 chr13 31474032 31474336 -70398833 - AluY SINE Alu -14 297 1 2194 96 3 0 chr13 31476148 31476449 -70396720 - AluSp SINE Alu -11 302 1 1366 91 11 0 chr13 31476685 31476872 -70396297 + AluSg1 SINE Alu 2 190 -119 378 0 0 0 chr13 31476886 31476928 -70396241 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 640 273 26 16 chr13 31477060 31477254 -70395915 - MIR SINE MIR -7 255 60 2540 48 0 3 chr13 31477362 31477673 -70395496 - AluY SINE Alu -1 310 1 2448 47 0 0 chr13 31477878 31478177 -70394992 - AluY SINE Alu -12 299 1 1380 85 0 0 chr13 31478647 31478824 -70394345 - AluSx SINE Alu -135 177 1 2146 71 0 52 chr13 31479027 31479335 -70393834 + AluSg SINE Alu 1 292 -18 225 263 0 18 chr13 31479936 31479993 -70393176 - MIR SINE MIR -68 140 85 200 299 126 39 chr13 31480339 31480466 -70392703 - L2 LINE L2 -177 3095 2958 1814 113 58 0 chr13 31481141 31481416 -70391753 - AluSp SINE Alu -22 291 1 1560 124 3 118 chr13 31481424 31481782 -70391387 - AluSx SINE Alu 0 321 1 346 274 159 57 chr13 31482074 31482231 -70390938 + MER5A DNA MER1_type 5 188 -1 230 231 83 83 chr13 31482232 31482340 -70390829 + MIR SINE MIR 102 209 -53 * 698 210 16 86 chr13 31482337 31482487 -70390682 + MER5A DNA MER1_type 17 153 -36 1113 146 169 50 chr13 31482487 31482748 -70390421 + AluJb SINE Alu 1 292 -10 698 210 16 86 chr13 31482748 31482783 -70390386 + MER5A DNA MER1_type 153 189 0 397 325 18 0 chr13 31482786 31482900 -70390269 + L2 LINE L2 3192 3307 -6 1946 108 3 17 chr13 31483294 31483589 -70389580 - AluSg SINE Alu -19 291 1 376 297 186 0 chr13 31483861 31484006 -70389163 + MIR SINE MIR 79 250 -12 2211 109 0 0 chr13 31484463 31484774 -70388395 - AluY SINE Alu 0 311 1 235 141 169 0 chr13 31485329 31485400 -70387769 + HsTC2 DNA Tc2 1795 1877 -21 1173 207 183 7 chr13 31486265 31486555 -70386614 - MLT1G3 LTR MaLR -10 520 180 1051 235 158 9 chr13 31486559 31486908 -70386261 - L1ME2 LINE L1 -68 6096 5696 1482 173 23 33 chr13 31487967 31488268 -70384901 + AluJo SINE Alu 7 304 -8 2318 64 14 3 chr13 31488273 31488569 -70384600 + AluY SINE Alu 1 299 -12 2300 82 0 3 chr13 31488728 31489032 -70384137 - AluY SINE Alu -8 303 1 2182 99 3 0 chr13 31489303 31489605 -70383564 - AluSq SINE Alu -10 303 1 2055 87 3 11 chr13 31490135 31490422 -70382747 + AluY SINE Alu 1 285 -26 41 0 0 0 chr13 31490422 31490463 -70382706 + AT_rich Low_complexity Low_complexity 1 41 0 1835 112 0 0 chr13 31490568 31490819 -70382350 + AluSg SINE Alu 1 251 -59 246 286 34 76 chr13 31492375 31492494 -70380675 + MIR SINE MIR 17 130 -78 2234 80 0 7 chr13 31494295 31494594 -70378575 - AluSx SINE Alu -13 299 3 2064 180 9 0 chr13 31494684 31495028 -70378141 - MER7A DNA MER2_type -1 345 1 193 297 212 8 chr13 31495590 31495708 -70377461 + MIR SINE MIR 16 157 -105 428 307 129 12 chr13 31495835 31495998 -70377171 - MER5A DNA MER1_type 0 189 8 1972 134 0 3 chr13 31496062 31496354 -70376815 - AluSx SINE Alu -21 291 1 205 368 0 23 chr13 31496354 31496441 -70376728 - MER5A DNA MER1_type -37 152 68 269 215 149 37 chr13 31496951 31497058 -70376111 - MIR SINE MIR -64 144 26 186 209 0 0 chr13 31497133 31497176 -70375993 + A-rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr13 31498312 31498338 -70374831 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 2371 68 7 0 chr13 31498886 31499195 -70373974 - AluY SINE Alu 0 311 1 1089 69 7 7 chr13 31499195 31499340 -70373829 - AluSq/x SINE Alu -167 145 1 867 175 0 0 chr13 31499504 31499647 -70373522 + FRAM SINE Alu 4 146 -30 333 0 0 0 chr13 31499649 31499686 -70373483 + (CA)n Simple_repeat Simple_repeat 2 38 0 990 162 12 0 chr13 31500096 31500269 -70372900 + AluJb SINE Alu 134 308 -4 209 200 247 35 chr13 31500296 31500381 -70372788 + MIR SINE MIR 21 123 -139 269 326 31 39 chr13 31500774 31500903 -70372266 - MIR SINE MIR -129 133 6 2208 93 0 25 chr13 31501659 31501980 -70371189 + AluSq SINE Alu 1 313 0 958 232 62 50 chr13 31502140 31502387 -70370782 - MLT1L LTR MaLR -210 405 151 1388 229 43 9 chr13 31502387 31502714 -70370455 - MER58B DNA MER1_type -3 338 1 958 232 62 50 chr13 31502714 31502806 -70370363 - MLT1L LTR MaLR -464 151 62 185 345 69 69 chr13 31503048 31503164 -70370005 - L2 LINE L2 -4 3268 3153 2293 81 0 10 chr13 31503164 31503474 -70369695 + AluY SINE Alu 2 308 -3 662 317 10 34 chr13 31503963 31504256 -70368913 - LTR67 LTR ERVL -270 287 2 259 214 143 18 chr13 31504270 31504382 -70368787 - L2 LINE L2 -306 2966 2841 1629 161 25 3 chr13 31504455 31504740 -70368429 - AluJo SINE Alu -20 292 2 203 88 29 0 chr13 31504919 31504953 -70368216 + (TC)n Simple_repeat Simple_repeat 2 36 0 1581 152 0 63 chr13 31505419 31505735 -70367434 - AluJo SINE Alu -15 297 2 553 261 109 35 chr13 31506282 31506512 -70366657 + MIR SINE MIR 16 262 0 463 134 0 24 chr13 31506651 31506733 -70366436 - FLAM_A SINE Alu -19 123 44 492 265 0 80 chr13 31506760 31506922 -70366247 - L2 LINE L2 -1 3312 3164 300 266 83 18 chr13 31506938 31507047 -70366122 + L2 LINE L2 3197 3312 -1 239 292 137 56 chr13 31507051 31507284 -70365885 - L2 LINE L2 -163 3150 2899 1326 160 52 37 chr13 31508465 31508734 -70364435 - AluJb SINE Alu -8 304 32 2240 70 0 24 chr13 31508796 31509094 -70364075 - AluY SINE Alu -20 291 1 1515 86 4 43 chr13 31510909 31511141 -70362028 - AluSq SINE Alu 0 313 91 7034 114 22 36 chr13 31511159 31512128 -70361041 + L1MA1 LINE L1 4316 5296 -1006 4686 25 0 0 chr13 31512128 31512659 -70360510 + L1PA3 LINE L1 5623 6153 -2 7034 114 22 36 chr13 31512659 31513674 -70359495 + L1MA1 LINE L1 5296 6302 0 454 238 128 80 chr13 31513747 31513974 -70359195 + MLT1H1 LTR MaLR 1 226 -329 2048 116 23 0 chr13 31513974 31514276 -70358893 + AluSc SINE Alu 1 309 0 454 238 128 80 chr13 31514276 31514323 -70358846 + MLT1H1 LTR MaLR 226 269 -286 2079 99 3 50 chr13 31514351 31514673 -70358496 + AluSx SINE Alu 6 312 0 2152 87 0 35 chr13 31514765 31515075 -70358094 + AluSg SINE Alu 3 301 -9 262 269 19 56 chr13 31515669 31515777 -70357392 - MIR SINE MIR -68 140 37 235 284 64 46 chr13 31516075 31516184 -70356985 - L2 LINE L2 -177 3095 2985 2196 70 53 0 chr13 31516869 31517153 -70356016 - AluSp SINE Alu -14 299 1 2121 125 0 0 chr13 31517186 31517473 -70355696 - AluSx SINE Alu -25 287 1 2538 62 3 0 chr13 31517500 31517807 -70355362 + AluY SINE Alu 1 308 -3 373 316 95 13 chr13 31518075 31518233 -70354936 + MER5A DNA MER1_type 19 189 0 249 247 111 0 chr13 31518233 31518314 -70354855 + MIR SINE MIR 102 191 -71 635 233 16 85 chr13 31518335 31518488 -70354681 + MER5A DNA MER1_type 14 153 -36 1224 118 171 49 chr13 31518488 31518751 -70354418 + AluJb SINE Alu 1 295 -17 635 233 16 85 chr13 31518751 31518786 -70354383 + MER5A DNA MER1_type 153 189 0 367 333 18 0 chr13 31518789 31518903 -70354266 + L2 LINE L2 3192 3307 -6 24 53 0 0 chr13 31519272 31519310 -70353859 + AT_rich Low_complexity Low_complexity 1 38 0 357 288 185 7 chr13 31519559 31519705 -70353464 + MIR SINE MIR 79 250 -12 229 163 82 0 chr13 31520693 31520742 -70352427 + HsTC2 DNA Tc2 1795 1847 -51 1282 208 140 60 chr13 31521630 31521968 -70351201 - MLT1G3 LTR MaLR -10 520 143 2044 97 11 4 chr13 31521968 31522271 -70350898 - AluSg SINE Alu 0 305 1 1282 208 140 60 chr13 31522271 31522331 -70350838 - MLT1G3 LTR MaLR -387 143 89 478 267 38 0 chr13 31522296 31522427 -70350742 - MER119 DNA MER1_type -277 306 171 * 521 111 22 11 chr13 31522519 31522609 -70350560 - MER2 DNA MER2_type -134 211 121 1927 144 3 7 chr13 31522609 31522907 -70350262 + AluSx SINE Alu 1 297 -15 2082 117 0 7 chr13 31522979 31523269 -70349900 - AluSx SINE Alu -17 295 8 1744 178 3 10 chr13 31523632 31523935 -70349234 - AluJb SINE Alu -5 307 7 762 218 0 0 chr13 31524171 31524304 -70348865 + FLAM_A SINE Alu 1 133 0 400 218 48 15 chr13 31524387 31524539 -70348630 - L1MD3 LINE L1 -1 7994 7782 1264 221 162 12 chr13 31524561 31524969 -70348200 - L1ME2 LINE L1 0 6164 5696 1656 179 3 29 chr13 31526021 31526334 -70346835 + AluJo SINE Alu 1 305 -7 2061 127 3 3 chr13 31526729 31527036 -70346133 - AluSq SINE Alu -6 307 1 1936 112 0 0 chr13 31527668 31527919 -70345250 + AluSg SINE Alu 1 251 -59 2133 83 22 0 chr13 31528128 31528431 -70344738 - AluSx SINE Alu 0 309 1 27 49 0 0 chr13 31528812 31528853 -70344316 + AT_rich Low_complexity Low_complexity 1 41 0 438 281 101 0 chr13 31529069 31529247 -70343922 + MIR SINE MIR 56 251 -11 213 206 0 0 chr13 31529218 31529252 -70343917 + L2 LINE L2 3227 3260 -12 * 2148 176 99 0 chr13 31530498 31530872 -70342297 - LTR57 LTR ERVL 0 411 1 1291 218 8 8 chr13 31531430 31531691 -70341478 + AluJo SINE Alu 39 299 -13 201 297 68 40 chr13 31532620 31532694 -70340475 + MIR3 SINE MIR 3 78 -130 * 362 250 118 37 chr13 31532682 31532818 -70340351 + MIR SINE MIR 116 262 0 516 217 19 0 chr13 31533299 31533405 -70339764 - L1MA10 LINE L1 -2 6332 6225 441 0 0 0 chr13 31533438 31533487 -70339682 + (CA)n Simple_repeat Simple_repeat 2 50 0 1962 181 28 65 chr13 31533492 31533694 -70339475 - L1ME1 LINE L1 -190 5976 5768 2331 82 0 20 chr13 31533694 31533997 -70339172 - AluSg SINE Alu -13 297 1 1962 181 28 65 chr13 31533997 31534257 -70338912 - L1ME1 LINE L1 -398 5768 5531 242 265 143 10 chr13 31534327 31534425 -70338744 + MIR SINE MIR 134 244 -18 2029 129 27 3 chr13 31534690 31534985 -70338184 - AluSg SINE Alu -8 302 1 200 180 20 20 chr13 31535677 31535727 -70337442 + (TTATA)n Simple_repeat Simple_repeat 1 50 0 1953 169 51 6 chr13 31536933 31537283 -70335886 + MER47A DNA MER2_type 1 366 0 198 0 0 0 chr13 31537557 31537579 -70335590 + (A)n Simple_repeat Simple_repeat 1 22 0 774 153 0 8 chr13 31537742 31537866 -70335303 - AluSg/x SINE Alu 0 309 187 1176 163 17 26 chr13 31537871 31538104 -70335065 - AluJb SINE Alu -81 231 1 260 268 37 24 chr13 31538117 31538199 -70334970 + MER5A DNA MER1_type 63 145 -44 368 273 143 19 chr13 31538218 31538379 -70334790 + MER5A DNA MER1_type 9 189 0 206 289 116 25 chr13 31538779 31538900 -70334269 + L2 LINE L2 2489 2620 -694 197 304 103 39 chr13 31539101 31539305 -70333864 + L2 LINE L2 1794 2010 -1304 491 251 121 35 chr13 31539673 31540004 -70333165 - MLT1L LTR MaLR -10 605 190 353 357 0 0 chr13 31540960 31541128 -70332041 + (TGG)n Simple_repeat Simple_repeat 1 168 0 656 256 14 58 chr13 31541954 31542161 -70331008 - LTR67 LTR ERVL -2 555 358 407 192 39 135 chr13 31542433 31542589 -70330580 - MER69A DNA AcHobo -1 176 36 200 315 0 90 chr13 31542651 31542740 -70330429 + L2 LINE L2 2981 3061 -211 262 154 0 0 chr13 31542895 31542934 -70330235 - Alu SINE Alu -263 39 1 2502 77 0 0 chr13 31543007 31543318 -70329851 - AluY SINE Alu 0 311 1 22 0 0 0 chr13 31543656 31543678 -70329491 + AT_rich Low_complexity Low_complexity 1 22 0 438 286 101 0 chr13 31543894 31544072 -70329097 + MIR SINE MIR 56 251 -11 217 243 0 0 chr13 31544040 31544077 -70329092 + L2 LINE L2 3224 3260 -12 * 21 57 0 0 chr13 31544360 31544395 -70328774 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr13 31544985 31545024 -70328145 + AT_rich Low_complexity Low_complexity 1 39 0 2272 171 79 0 chr13 31545245 31545626 -70327543 - LTR57 LTR ERVL 0 411 1 1310 212 11 8 chr13 31546179 31546443 -70326726 + AluJo SINE Alu 34 298 -14 379 239 116 22 chr13 31547432 31547570 -70325599 + MIR SINE MIR 112 262 0 2405 209 50 44 chr13 31548060 31548209 -70324960 - L1ME2 LINE L1 -9 6155 6008 207 69 0 0 chr13 31548209 31548238 -70324931 + (CA)n Simple_repeat Simple_repeat 2 30 0 2405 209 50 44 chr13 31548238 31548445 -70324724 - L1ME2 LINE L1 -156 6008 5804 2236 96 0 20 chr13 31548445 31548748 -70324421 - AluSg SINE Alu -13 297 1 2405 209 50 44 chr13 31548748 31549008 -70324161 - L1ME2 LINE L1 -360 5804 5534 297 250 130 10 chr13 31549078 31549178 -70323991 + MIR SINE MIR 134 245 -17 2235 96 3 0 chr13 31549470 31549761 -70323408 - AluSq SINE Alu -21 292 1 1582 173 0 47 chr13 31550772 31551090 -70322079 - AluJo SINE Alu -9 303 1 2310 100 0 3 chr13 31551116 31551417 -70321752 - AluSg SINE Alu -10 300 1 21 0 0 0 chr13 31551750 31551771 -70321398 + AT_rich Low_complexity Low_complexity 1 21 0 2077 118 3 3 chr13 31553078 31553366 -70319803 - AluSc SINE Alu -20 289 2 2150 131 0 0 chr13 31553478 31553784 -70319385 - AluSg SINE Alu -4 306 1 2195 129 0 0 chr13 31553895 31554189 -70318980 - AluSx SINE Alu -18 294 1 2225 102 7 7 chr13 31555187 31555491 -70317678 + AluSx SINE Alu 1 304 -8 303 244 13 13 chr13 31555604 31555682 -70317487 + L2 LINE L2 3193 3270 -2 833 274 70 27 chr13 31555692 31556020 -70317149 + HAL1 LINE L1 1441 1782 -725 2068 103 50 0 chr13 31556499 31556781 -70316388 + AluSc SINE Alu 1 296 -13 512 198 0 11 chr13 31556860 31556951 -70316218 + FRAM SINE Alu 71 160 -16 236 295 78 66 chr13 31557183 31557349 -70315820 + HAL1 LINE L1 2304 2471 -36 1721 166 39 106 chr13 31557694 31558110 -70315059 + MLT1B LTR MaLR 3 390 0 2336 100 0 0 chr13 31558284 31558584 -70314585 - AluSx SINE Alu -12 300 1 194 138 0 0 chr13 31559188 31559217 -70313952 - MIR SINE MIR -82 180 152 697 165 63 0 chr13 31559248 31559375 -70313794 - MLT1D LTR MaLR 0 505 371 774 138 0 0 chr13 31559391 31559500 -70313669 + FLAM_A SINE Alu 21 129 -13 245 148 34 182 chr13 31559500 31559588 -70313581 - MLT1D LTR MaLR -123 382 308 261 0 0 0 chr13 31559617 31559646 -70313523 + (TA)n Simple_repeat Simple_repeat 1 29 0 1314 186 84 11 chr13 31559646 31559920 -70313249 - AluJb SINE Alu -15 297 4 727 221 129 66 chr13 31559922 31560225 -70312944 - MLT1D LTR MaLR -183 322 1 230 37 0 0 chr13 31560226 31560253 -70312916 - MIR SINE MIR -164 98 72 21 0 0 0 chr13 31560484 31560505 -70312664 + GC_rich Low_complexity Low_complexity 1 21 0 380 242 85 34 chr13 31560860 31561077 -70312092 - LTR26E LTR ERV1 -7 720 356 376 213 65 26 chr13 31561140 31561300 -70311869 - LTR8 LTR ERV1 -399 142 1 2498 50 3 0 chr13 31561922 31562219 -70310950 + AluSp SINE Alu 1 298 -15 204 346 59 10 chr13 31562452 31562553 -70310616 + L2 LINE L2 2286 2391 -923 453 311 74 48 chr13 31562618 31562969 -70310200 + L2 LINE L2 2394 2753 -561 280 344 11 0 chr13 31563014 31563107 -70310062 + L2 LINE L2 2932 3025 -247 676 183 133 117 chr13 31563236 31563734 -70309435 - MER34B LTR ERV1 0 542 8 1778 130 0 96 chr13 31564091 31564414 -70308755 + AluSx SINE Alu 1 292 -20 1009 173 18 0 chr13 31564920 31565088 -70308081 - MER5A DNA MER1_type 0 189 19 925 133 7 27 chr13 31565115 31565265 -70307904 - FRAM SINE Alu -7 169 23 1171 145 40 72 chr13 31567658 31567934 -70305235 - L1MA7 LINE L1 -9 6282 6016 2032 142 39 6 chr13 31568000 31568337 -70304832 - MER7A DNA MER2_type 0 346 1 558 235 124 0 chr13 31569235 31569388 -70303781 + MER5B DNA MER1_type 1 172 -6 21 0 0 0 chr13 31569654 31569675 -70303494 + AT_rich Low_complexity Low_complexity 1 21 0 317 314 66 4 chr13 31569686 31569912 -70303257 - L1ME4a LINE L1 -252 5869 5630 413 259 101 54 chr13 31570032 31570214 -70302955 + L1MC4 LINE L1 7697 7902 -140 2287 105 0 3 chr13 31570214 31570510 -70302659 - AluSg SINE Alu -14 296 2 413 259 101 54 chr13 31570510 31570643 -70302526 + L1MC4 LINE L1 7902 8027 -15 1074 174 0 0 chr13 31570724 31570896 -70302273 + FAM SINE Alu 1 172 -3 2258 79 0 26 chr13 31570900 31571204 -70301965 + AluY SINE Alu 1 296 -15 222 235 20 0 chr13 31571898 31571949 -70301220 + CT-rich Low_complexity Low_complexity 3 54 0 2929 138 48 45 chr13 31571951 31572073 -70301096 - L1MB4 LINE L1 0 6180 6060 240 35 0 0 chr13 31572073 31572102 -70301067 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1951 104 0 78 chr13 31572102 31572409 -70300760 - AluSx SINE Alu -29 283 1 2929 138 48 45 chr13 31572409 31572913 -70300256 - L1MB4 LINE L1 -119 6061 5551 603 241 60 6 chr13 31573312 31573478 -70299691 + MER5B DNA MER1_type 2 176 -2 22 0 0 0 chr13 31573488 31573510 -70299659 + AT_rich Low_complexity Low_complexity 1 22 0 448 138 0 43 chr13 31573832 31573926 -70299243 - L1MC3 LINE L1 0 7785 7696 394 322 40 17 chr13 31573933 31574107 -70299062 + L1M4 LINE L1 5057 5234 -912 745 133 0 0 chr13 31574144 31574257 -70298912 - L1PA10 LINE L1 -8 6160 6048 1644 155 0 34 chr13 31574486 31574751 -70298418 + AluJo SINE Alu 1 256 -56 2298 92 0 7 chr13 31575672 31575967 -70297202 - AluSx SINE Alu -19 293 1 674 168 92 40 chr13 31576594 31576767 -70296402 + L1MC1 LINE L1 6127 6308 -25 1990 102 11 4 chr13 31576769 31577033 -70296136 - AluSq SINE Alu -18 295 30 2421 78 0 0 chr13 31577521 31577817 -70295352 + AluY SINE Alu 1 296 -15 2103 123 0 23 chr13 31577991 31578299 -70294870 - AluSx SINE Alu -11 301 1 269 319 85 0 chr13 31578428 31578522 -70294647 + L2 LINE L2 3169 3270 -2 1169 101 6 0 chr13 31579118 31579277 -70293892 + AluSp SINE Alu 137 296 -17 2220 102 0 0 chr13 31579486 31579770 -70293399 - AluY SINE Alu -27 284 1 1841 162 0 41 chr13 31579862 31580177 -70292992 - AluJo SINE Alu -10 302 1 2002 131 3 3 chr13 31580190 31580480 -70292689 - AluSx SINE Alu -22 290 1 1584 143 42 65 chr13 31580490 31580874 -70292295 - L1MB4 LINE L1 0 6180 5806 192 152 0 0 chr13 31581142 31581175 -70291994 + CT-rich Low_complexity Low_complexity 1 33 0 1788 153 4 11 chr13 31581175 31581450 -70291719 - AluJb SINE Alu -39 273 1 432 204 31 93 chr13 31581656 31581779 -70291390 - L1ME1 LINE L1 -9 6157 6045 1698 158 7 10 chr13 31581779 31582071 -70291098 + AluJo SINE Alu 5 295 -17 432 204 31 93 chr13 31582071 31582109 -70291060 - L1ME1 LINE L1 -121 6045 6006 180 236 127 0 chr13 31582595 31582650 -70290519 - L2 LINE L2 -1 3271 3210 232 282 29 0 chr13 31582952 31583055 -70290114 + (TA)n Simple_repeat Simple_repeat 2 107 0 734 134 21 7 chr13 31584415 31584557 -70288612 - L1MB3 LINE L1 -7 6176 6033 26 82 0 0 chr13 31584878 31584939 -70288230 + AT_rich Low_complexity Low_complexity 1 61 0 25 0 0 0 chr13 31584994 31585019 -70288150 + AT_rich Low_complexity Low_complexity 1 25 0 1934 147 20 0 chr13 31585772 31586064 -70287105 + AluJo SINE Alu 1 298 -14 279 0 0 0 chr13 31586450 31586481 -70286688 + (TG)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr13 31586652 31586688 -70286481 + AT_rich Low_complexity Low_complexity 1 36 0 529 292 29 12 chr13 31587162 31587333 -70285836 + MIR SINE MIR 4 177 -85 1278 183 103 0 chr13 31588035 31588336 -70284833 - L1MD3 LINE L1 -256 7739 7408 301 273 11 0 chr13 31588341 31588429 -70284740 - MLT1F1 LTR MaLR -443 124 36 2719 183 60 38 chr13 31588429 31589123 -70284046 - L1MC3 LINE L1 -813 6972 6263 316 194 69 0 chr13 31589146 31589218 -70283951 + Charlie2 DNA MER1_type 45 121 -2741 1519 219 154 3 chr13 31589336 31589925 -70283244 + Charlie2 DNA MER1_type 1880 2557 -305 540 225 33 0 chr13 31590117 31590268 -70282901 + MLT1B LTR MaLR 22 177 -213 283 233 153 74 chr13 31590283 31590498 -70282671 + Charlie2 DNA MER1_type 2525 2756 -106 189 322 96 17 chr13 31590642 31590757 -70282412 + MIR SINE MIR 52 175 -87 1501 241 93 22 chr13 31591591 31592193 -70280976 - MER20B DNA MER1_type -132 651 7 398 299 45 15 chr13 31592268 31592402 -70280767 - MIR SINE MIR -74 188 51 22 0 0 0 chr13 31592803 31592825 -70280344 + AT_rich Low_complexity Low_complexity 1 22 0 762 154 39 0 chr13 31592913 31593043 -70280126 + AluJo SINE Alu 1 135 -177 287 232 76 92 chr13 31593253 31593290 -70279879 + L2 LINE L2 3132 3168 -145 2218 129 0 3 chr13 31593290 31593601 -70279568 - AluSx SINE Alu -2 310 1 287 232 76 92 chr13 31593601 31593748 -70279421 + L2 LINE L2 3168 3313 0 29 28 0 0 chr13 31593792 31593828 -70279341 + AT_rich Low_complexity Low_complexity 1 36 0 399 97 0 28 chr13 31594029 31594101 -70279068 + L1MB3 LINE L1 6088 6157 -26 2427 59 0 0 chr13 31594525 31594811 -70278358 - AluY SINE Alu -21 290 5 520 157 20 0 chr13 31594821 31594923 -70278246 - MLT1F LTR MaLR 0 542 439 271 336 91 21 chr13 31595009 31595152 -70278017 + L2 LINE L2 2375 2527 -787 1669 154 90 0 chr13 31595803 31596069 -70277100 - AluJo SINE Alu -22 290 1 282 267 67 73 chr13 31596381 31596531 -70276638 + L2 LINE L2 3163 3311 -2 239 228 80 68 chr13 31597118 31597280 -70275889 - L1ME4a LINE L1 -11 6110 5947 2202 84 10 17 chr13 31597317 31597613 -70275556 - AluSx SINE Alu -18 294 1 311 244 30 73 chr13 31597768 31597803 -70275366 + L1ME4a LINE L1 4378 4413 -1733 288 53 0 0 chr13 31597803 31597841 -70275328 + (TG)n Simple_repeat Simple_repeat 2 39 0 311 244 30 73 chr13 31597841 31597969 -70275200 + L1ME4a LINE L1 4413 4534 -1612 1423 176 40 58 chr13 31597984 31598308 -70274861 - MER61E LTR ERV1 -7 787 459 1983 146 0 44 chr13 31598308 31598623 -70274546 + AluSx SINE Alu 1 301 -11 1423 176 40 58 chr13 31598623 31599008 -70274161 - MER61E LTR ERV1 -335 459 1 239 284 78 41 chr13 31599112 31599355 -70273814 + L1ME4a LINE L1 4678 4929 -1217 2397 75 0 3 chr13 31599481 31599776 -70273393 - AluSc SINE Alu -15 294 1 417 262 156 26 chr13 31599938 31600323 -70272846 + L1ME4a LINE L1 5657 6091 -30 3452 42 2 8 chr13 31601159 31601561 -70271608 - SVA Other Other 0 1386 987 333 89 0 18 chr13 31601666 31601722 -70271447 + Alu SINE Alu 244 298 -4 453 176 0 0 chr13 31603124 31603198 -70269971 + AluS SINE Alu 1 74 -238 2103 133 7 3 chr13 31603285 31603586 -70269583 + AluSx SINE Alu 1 302 -10 2244 109 0 3 chr13 31603959 31604253 -70268916 + AluSx SINE Alu 1 293 -19 277 151 0 140 chr13 31605151 31605183 -70267986 + MER116 DNA Mariner 1 36 -44 2107 81 46 14 chr13 31605183 31605466 -70267703 + AluY SINE Alu 1 292 -19 277 151 0 140 chr13 31605466 31605526 -70267643 + MER116 DNA Mariner 36 80 0 1587 167 6 69 chr13 31605595 31605913 -70267256 - AluJo SINE Alu -11 301 4 329 143 11 132 chr13 31606679 31606695 -70266474 + AluJb SINE Alu 203 219 -106 1803 146 188 6 chr13 31606695 31607057 -70266112 + MSTA LTR MaLR 1 428 0 9104 166 37 2 chr13 31607061 31608653 -70264516 + MSTA-int LTR MaLR 5 1651 0 2133 128 150 5 chr13 31608653 31609027 -70264142 + MSTA LTR MaLR 1 428 0 329 143 11 132 chr13 31609027 31609138 -70264031 + AluJb SINE Alu 220 325 0 1799 88 15 0 chr13 31609785 31610046 -70263123 + L1MA1 LINE L1 6034 6298 -4 23 0 0 0 chr13 31610046 31610069 -70263100 + AT_rich Low_complexity Low_complexity 1 23 0 1073 115 0 0 chr13 31610084 31610223 -70262946 + AluSg SINE Alu 1 139 -171 2246 86 0 0 chr13 31610223 31610526 -70262643 + AluSc SINE Alu 1 303 0 1625 180 11 0 chr13 31611095 31611379 -70261790 - AluSx SINE Alu -10 302 16 894 132 0 16 chr13 31611425 31611554 -70261615 + FLAM_C SINE Alu 1 127 -16 2410 57 0 7 chr13 31611950 31612247 -70260922 + AluY SINE Alu 1 295 -16 1831 149 0 17 chr13 31613258 31613546 -70259623 + AluJb SINE Alu 20 302 -10 2147 110 0 7 chr13 31613980 31614271 -70258898 + AluSx SINE Alu 1 289 -23 2010 190 47 14 chr13 31614343 31614770 -70258399 + MER68 LTR ERV1 1 441 -121 2083 107 7 10 chr13 31614806 31615096 -70258073 - AluSx SINE Alu -23 289 1 330 67 0 0 chr13 31616063 31616108 -70257061 + (TG)n Simple_repeat Simple_repeat 2 46 0 832 178 0 8 chr13 31616224 31616353 -70256816 - FLAM_C SINE Alu -5 128 1 851 143 38 23 chr13 31616699 31616832 -70256337 - AluJo SINE Alu -176 136 2 2213 114 0 3 chr13 31617317 31617614 -70255555 + AluSx SINE Alu 1 296 -16 510 239 148 14 chr13 31617666 31617808 -70255361 - MIR3 SINE MIR -21 187 27 5286 68 12 18 chr13 31618047 31618144 -70255025 + PABL_A LTR ERV1 1 97 -563 2191 116 7 3 chr13 31618144 31618445 -70254724 + AluSq SINE Alu 1 302 -11 5286 68 12 18 chr13 31618445 31619011 -70254158 + PABL_A LTR ERV1 97 660 0 22 0 0 0 chr13 31619242 31619264 -70253905 + AT_rich Low_complexity Low_complexity 1 22 0 460 235 59 0 chr13 31619554 31619673 -70253496 - L1ME4a LINE L1 -40 6081 5956 253 209 15 45 chr13 31619901 31619968 -70253201 - L1ME4a LINE L1 -511 5610 5546 5437 138 39 32 chr13 31619982 31620877 -70252292 + MER4D LTR ERV1 1 901 -2 222 37 0 0 chr13 31621499 31621526 -70251643 + (CA)n Simple_repeat Simple_repeat 2 28 0 220 271 0 0 chr13 31621576 31621624 -70251545 - MIR SINE MIR -108 154 107 21 0 0 0 chr13 31622252 31622273 -70250896 + AT_rich Low_complexity Low_complexity 1 21 0 975 214 17 34 chr13 31623259 31623497 -70249672 + MIR SINE MIR 29 262 0 23 0 0 0 chr13 31624293 31624316 -70248853 + AT_rich Low_complexity Low_complexity 1 23 0 2127 157 48 8 chr13 31624539 31624890 -70248279 + MLT1A1 LTR MaLR 1 365 0 212 280 67 13 chr13 31624980 31625055 -70248114 + L2 LINE L2 3190 3268 -4 2350 49 42 3 chr13 31625849 31626134 -70247035 - AluY SINE Alu -15 296 1 278 255 88 20 chr13 31626325 31626427 -70246742 - MIR SINE MIR -44 218 110 204 329 49 0 chr13 31626788 31626870 -70246299 - L2 LINE L2 -55 3217 3132 1997 106 84 0 chr13 31626887 31627171 -70245998 - AluSg SINE Alu -2 308 1 1213 155 0 19 chr13 31627753 31627959 -70245210 - AluSc SINE Alu 0 309 108 353 299 57 13 chr13 31628065 31628222 -70244947 + MIR3 SINE MIR 40 203 -5 2368 102 0 0 chr13 31628263 31628566 -70244603 + AluSg SINE Alu 1 303 -7 1984 147 0 3 chr13 31628599 31628891 -70244278 + AluJo SINE Alu 13 303 -9 2117 120 7 0 chr13 31628891 31629183 -70243986 + AluY SINE Alu 1 294 -17 2268 185 40 15 chr13 31629722 31630176 -70242993 - MLT1C LTR MaLR 0 467 3 189 270 16 48 chr13 31630802 31630865 -70242304 - L2 LINE L2 -1 3312 3252 2473 131 22 8 chr13 31631603 31631962 -70241207 - THE1B LTR MaLR 0 364 1 287 287 20 59 chr13 31631989 31632067 -70241102 - MIR SINE MIR -144 118 38 1778 163 40 10 chr13 31632067 31632186 -70240983 + AluJo SINE Alu 1 115 -197 486 0 0 0 chr13 31632186 31632240 -70240929 + (CA)n Simple_repeat Simple_repeat 2 55 0 453 19 0 0 chr13 31632239 31632293 -70240876 + (TC)n Simple_repeat Simple_repeat 2 55 0 * 1778 163 40 10 chr13 31632240 31632474 -70240695 + AluJo SINE Alu 115 310 -2 287 287 20 59 chr13 31632474 31632496 -70240673 - MIR SINE MIR -224 38 22 1573 170 48 4 chr13 31632498 31632768 -70240401 + AluJo SINE Alu 15 296 -16 2367 92 0 0 chr13 31633167 31633461 -70239708 + AluY SINE Alu 1 294 -17 304 276 103 86 chr13 31633797 31633841 -70239328 + MER5B DNA MER1_type 2 44 -134 2207 101 3 0 chr13 31633841 31634128 -70239041 - AluSc SINE Alu -13 296 9 304 276 103 86 chr13 31634128 31634257 -70238912 + MER5B DNA MER1_type 44 178 0 2310 87 3 0 chr13 31634678 31634966 -70238203 - AluSq SINE Alu -21 292 4 22 0 0 0 chr13 31635008 31635030 -70238139 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 7 89 chr13 31635312 31635447 -70237722 + L1ME4a LINE L1 5975 6098 -23 748 158 61 0 chr13 31635526 31635640 -70237529 + FLAM_A SINE Alu 10 130 -12 260 192 0 0 chr13 31636044 31636096 -70237073 - L1MB2 LINE L1 0 6171 6120 6146 33 3 18 chr13 31636096 31636827 -70236342 - SVA Other Other -2 1384 665 1369 108 0 0 chr13 31637047 31637223 -70235946 - AluSg SINE Alu -134 176 1 21 0 0 0 chr13 31637290 31637311 -70235858 + AT_rich Low_complexity Low_complexity 1 21 0 518 289 64 23 chr13 31637367 31637540 -70235629 - MIR SINE MIR -20 242 63 794 192 8 0 chr13 31637644 31637774 -70235395 + FLAM_A SINE Alu 1 131 -2 315 68 23 0 chr13 31637987 31638031 -70235138 - MADE1 DNA Mariner 0 80 36 1978 137 0 3 chr13 31638265 31638550 -70234619 + AluJb SINE Alu 16 299 -13 558 262 36 78 chr13 31638584 31638774 -70234395 - L1ME LINE L1 -509 5612 5440 2107 147 0 3 chr13 31638774 31639081 -70234088 - AluSx SINE Alu -6 306 1 558 262 36 78 chr13 31639081 31639222 -70233947 - L1ME LINE L1 -681 5440 5295 24 0 0 0 chr13 31639238 31639262 -70233907 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 31639305 31639341 -70233828 + AT_rich Low_complexity Low_complexity 1 36 0 188 286 0 52 chr13 31639448 31639525 -70233644 - MIR SINE MIR -133 129 57 488 257 96 20 chr13 31640643 31640872 -70232297 - MLT1I LTR MaLR -2 624 150 837 203 45 11 chr13 31641191 31641368 -70231801 - L2 LINE L2 0 3313 3131 312 280 95 45 chr13 31641893 31642093 -70231076 + L2 LINE L2 3104 3313 0 2442 63 10 10 chr13 31642491 31642792 -70230377 + AluSq SINE Alu 1 301 -12 421 242 10 30 chr13 31642879 31642978 -70230191 - L2 LINE L2 -4 3309 3213 1193 198 25 8 chr13 31642981 31643218 -70229951 - MLT1E3 LTR MaLR 0 624 384 451 192 0 0 chr13 31643227 31643305 -70229864 - FRAM SINE Alu -75 101 24 636 153 8 0 chr13 31643317 31643435 -70229734 - HsTC2 DNA Tc2 -140 1758 1640 1830 142 10 39 chr13 31643512 31643822 -70229347 - AluJb SINE Alu -11 301 1 2467 84 10 0 chr13 31644078 31644387 -70228782 - AluSx SINE Alu 0 312 1 684 89 7 15 chr13 31644521 31644656 -70228513 - SVA Other Other -592 794 661 5941 69 18 17 chr13 31644670 31645735 -70227434 - SVA Other Other -518 868 50 306 0 0 0 chr13 31645735 31645769 -70227400 + (GGGAGA)n Simple_repeat Simple_repeat 1 34 0 2321 204 26 76 chr13 31646466 31646967 -70226202 - L1ME1 LINE L1 -4 6162 5702 2309 98 7 0 chr13 31646967 31647263 -70225906 - AluSp SINE Alu -15 298 1 2321 204 26 76 chr13 31647263 31647444 -70225725 - L1ME1 LINE L1 -464 5702 5514 1053 261 21 73 chr13 31647440 31647812 -70225357 - L1MEc LINE L1 -6010 386 34 * 546 332 104 11 chr13 31647896 31648251 -70224918 + L2 LINE L2 2922 3309 -4 487 251 50 56 chr13 31648249 31648428 -70224741 - L2 LINE L2 -995 2319 2142 * 6141 98 18 11 chr13 31649396 31651397 -70221772 - L1PA16 LINE L1 -5 6161 4168 2093 127 0 10 chr13 31651440 31651747 -70221422 + AluSc SINE Alu 1 304 -5 186 308 23 77 chr13 31653334 31653464 -70219705 + L2 LINE L2 2249 2371 -943 2329 128 20 69 chr13 31653486 31653878 -70219291 - MER83C LTR ERV1 0 373 1 467 233 101 73 chr13 31654005 31654224 -70218945 + MIR SINE MIR 29 253 -9 2278 121 53 28 chr13 31654323 31654678 -70218491 - THE1B LTR MaLR 0 364 1 182 344 62 21 chr13 31654987 31655083 -70218086 - L2 LINE L2 -5 3267 3168 190 291 76 0 chr13 31655211 31655290 -70217879 - L2 LINE L2 -590 2724 2640 244 350 118 22 chr13 31655330 31655747 -70217422 - L2 LINE L2 -811 2503 2047 5945 79 20 23 chr13 31656187 31657056 -70216113 - SVA Other Other -520 866 1 2324 105 13 0 chr13 31657366 31657670 -70215499 + AluSg SINE Alu 1 308 -2 368 293 122 0 chr13 31657956 31658079 -70215090 + MIR3 SINE MIR 66 203 -5 2278 144 37 3 chr13 31658694 31659020 -70214149 + MER1B DNA MER1_type 1 337 0 821 166 45 13 chr13 31659062 31659219 -70213950 + FRAM SINE Alu 2 163 -13 2178 93 31 0 chr13 31659439 31659730 -70213439 + AluSq SINE Alu 1 300 -13 346 256 87 76 chr13 31659795 31660084 -70213085 - MER65-int LTR ERV1 -2959 1977 1686 226 67 44 0 chr13 31660090 31660135 -70213034 + (TTA)n Simple_repeat Simple_repeat 3 49 0 38853 29 23 2 chr13 31660135 31665575 -70207594 - L1PA3 LINE L1 -18 6137 576 806 211 0 0 chr13 31665611 31665763 -70207406 + FRAM SINE Alu 13 164 -12 1135 205 60 41 chr13 31665767 31666133 -70207036 - MER65-int LTR ERV1 -3306 1817 1445 1017 254 61 85 chr13 31666143 31666638 -70206531 - LTR38 LTR ERV1 -11 545 66 498 180 9 180 chr13 31666658 31666763 -70206406 - MER65-int LTR ERV1 -3691 1180 1059 191 0 32 32 chr13 31666763 31666794 -70206375 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1954 122 48 0 chr13 31666794 31667065 -70206104 - AluSx SINE Alu -1 314 1 498 180 9 180 chr13 31667065 31667183 -70205986 - MER65-int LTR ERV1 -3638 1233 1096 552 281 138 35 chr13 31667183 31667414 -70205755 - MER34C LTR ERV1 -171 414 160 3788 173 80 53 chr13 31667425 31667753 -70205416 - LTR49-int LTR ERV1 -3788 2543 2225 4982 73 24 37 chr13 31667753 31668426 -70204743 - MER4A LTR ERV1 0 664 1 3788 173 80 53 chr13 31668426 31669014 -70204155 - LTR49-int LTR ERV1 -4106 2225 753 2482 94 0 0 chr13 31669066 31669375 -70203794 + AluSg SINE Alu 1 309 -1 242 278 30 104 chr13 31670094 31670309 -70202860 - L1M4 LINE L1 -1305 4841 4658 1592 39 133 0 chr13 31670309 31670512 -70202657 - MER30 DNA MER1_type 0 230 1 242 278 30 104 chr13 31670512 31670634 -70202535 - L1M4 LINE L1 -1488 4658 4529 1854 162 0 3 chr13 31670635 31670943 -70202226 - AluJo SINE Alu 0 307 1 3486 110 9 38 chr13 31670952 31671505 -70201664 - L1MA8 LINE L1 -5 6286 5750 911 126 0 15 chr13 31671656 31671791 -70201378 - AluJb SINE Alu -176 136 4 1861 146 0 0 chr13 31671797 31672091 -70201078 - L1MA5A LINE L1 0 6297 6004 269 186 291 0 chr13 31672120 31672206 -70200963 - L1M4 LINE L1 -1801 4345 4235 1640 133 10 68 chr13 31672233 31672541 -70200628 - AluJo SINE Alu -22 290 1 891 262 120 23 chr13 31672827 31673276 -70199893 - L1MC/D LINE L1 -754 5392 5174 1349 165 0 30 chr13 31673335 31673565 -70199604 - AluJb SINE Alu -17 295 73 1612 203 3 16 chr13 31673567 31673878 -70199291 - AluJo SINE Alu 0 312 6 31 58 0 0 chr13 31673892 31673944 -70199225 + AT_rich Low_complexity Low_complexity 1 52 0 2369 89 0 0 chr13 31673989 31674281 -70198888 - AluSg SINE Alu -12 298 7 557 96 24 0 chr13 31674291 31674374 -70198795 - AluY SINE Alu -9 302 218 2172 52 8 4 chr13 31674593 31674861 -70198308 + AluY SINE Alu 32 300 -11 1053 174 7 109 chr13 31675380 31675673 -70197496 - L1ME1 LINE L1 -301 5865 5603 3272 71 28 0 chr13 31675675 31676097 -70197072 - MLT2A1 LTR ERVL -10 434 1 767 210 96 6 chr13 31676099 31676367 -70196802 - L1ME1 LINE L1 -553 5613 5180 2398 97 0 3 chr13 31676425 31676735 -70196434 - AluSg1 SINE Alu 0 309 1 279 300 77 20 chr13 31676781 31677078 -70196091 - L1MDa LINE L1 -3723 2406 2093 416 237 70 59 chr13 31677382 31677568 -70195601 - L1MC5 LINE L1 -36 7925 7738 31 26 0 0 chr13 31677587 31677625 -70195544 + AT_rich Low_complexity Low_complexity 1 38 0 360 272 184 27 chr13 31677685 31678060 -70195109 - L1MDa LINE L1 -4476 1653 1220 408 265 118 91 chr13 31678076 31678238 -70194931 - L1MDa LINE L1 -4910 1209 1053 2443 69 0 0 chr13 31678238 31678529 -70194640 - AluSq SINE Alu -5 308 18 408 265 118 91 chr13 31678529 31678891 -70194278 - L1MDa LINE L1 -5066 1053 671 1106 274 155 42 chr13 31678983 31679491 -70193678 + L1MEd LINE L1 333 783 -5336 2025 184 11 43 chr13 31679491 31679607 -70193562 - MLT1A1 LTR MaLR -2 363 245 2227 106 7 3 chr13 31679607 31679910 -70193259 + AluSq SINE Alu 1 304 -9 2025 184 11 43 chr13 31679910 31680168 -70193001 - MLT1A1 LTR MaLR -120 245 1 1106 274 155 42 chr13 31680168 31680487 -70192682 + L1MEd LINE L1 783 1253 -4866 319 335 148 19 chr13 31680605 31681145 -70192024 + L2 LINE L2 1201 1810 -1504 897 140 0 7 chr13 31681146 31681282 -70191887 - AluJo/FRAM SINE Alu -10 302 168 772 200 30 0 chr13 31681283 31681418 -70191751 + AluJo SINE Alu 29 167 -145 291 299 32 32 chr13 31681421 31681575 -70191594 + L2 LINE L2 1802 1955 -1359 1700 102 17 4 chr13 31681648 31681884 -70191285 - AluSg/x SINE Alu -8 304 66 474 280 70 32 chr13 31682010 31682057 -70191112 + MIR SINE MIR 53 97 -165 2706 14 0 0 chr13 31682057 31682350 -70190819 - AluY SINE Alu -18 293 1 474 280 70 32 chr13 31682350 31682488 -70190681 + MIR SINE MIR 97 245 -17 2060 102 11 4 chr13 31683254 31683529 -70189640 + AluSq SINE Alu 29 305 -8 2122 183 62 56 chr13 31683545 31684047 -70189122 + MLT1D LTR MaLR 1 505 0 203 223 181 64 chr13 31684268 31684362 -70188807 + L2 LINE L2 3168 3272 0 228 67 0 0 chr13 31685092 31685122 -70188047 + (A)n Simple_repeat Simple_repeat 1 30 0 1707 129 3 111 chr13 31685146 31685487 -70187682 + AluJb SINE Alu 2 305 -7 392 337 30 57 chr13 31687048 31687253 -70185916 + MIR3 SINE MIR 3 201 -7 2158 111 16 7 chr13 31687745 31688051 -70185118 - AluSq SINE Alu -4 309 1 305 266 12 92 chr13 31688094 31688287 -70184882 - MIR3 SINE MIR -69 139 2 883 153 0 8 chr13 31691885 31692016 -70181153 - FLAM_C SINE Alu -3 130 1 523 216 0 0 chr13 31692420 31692517 -70180652 - MER105 DNA DNA -43 161 65 686 312 168 35 chr13 31692615 31693536 -70179633 + L2 LINE L2 1621 2664 -650 262 247 108 44 chr13 31693709 31693867 -70179302 + L2 LINE L2 2939 3106 -166 412 300 21 50 chr13 31694483 31694623 -70178546 - MER5A DNA MER1_type 0 189 54 850 237 37 47 chr13 31694642 31694889 -70178280 + MIR SINE MIR 19 262 0 1393 90 0 0 chr13 31696022 31696199 -70176970 + AluSg/x SINE Alu 126 302 -10 553 118 0 0 chr13 31696225 31696310 -70176859 + AluSp/q SINE Alu 227 311 -2 1464 84 35 0 chr13 31696381 31696584 -70176585 - AluSp SINE Alu -13 300 91 448 162 105 0 chr13 31696941 31697046 -70176123 - AluSp SINE Alu -107 206 91 290 290 65 111 chr13 31697458 31697484 -70175685 - L2 LINE L2 0 3272 3246 1967 90 135 0 chr13 31697484 31697751 -70175418 + AluSp SINE Alu 1 303 0 290 290 65 111 chr13 31697751 31697941 -70175228 - L2 LINE L2 -26 3246 3066 274 263 25 12 chr13 31697939 31698019 -70175150 + L2 LINE L2 2641 2721 -593 * 2001 143 0 19 chr13 31698053 31698361 -70174808 - AluSx SINE Alu -8 304 3 1104 269 32 27 chr13 31698364 31698772 -70174397 + MLT1G LTR MaLR 21 410 -132 454 323 45 14 chr13 31698819 31699042 -70174127 + L2 LINE L2 2748 2977 -337 579 250 23 10 chr13 31699069 31699235 -70173934 + MIR SINE MIR 2 250 -12 645 239 130 29 chr13 31699276 31699514 -70173655 + L2 LINE L2 3047 3308 -5 1581 180 58 10 chr13 31700492 31700786 -70172383 - AluJb SINE Alu -2 310 3 2550 69 0 0 chr13 31700926 31701230 -70171939 + AluY SINE Alu 1 304 -7 351 318 56 0 chr13 31702215 31702322 -70170847 + L2 LINE L2 3153 3265 -7 2855 96 0 3 chr13 31702685 31703041 -70170128 - THE1A LTR MaLR 0 355 1 12589 89 2 1 chr13 31703041 31704618 -70168551 - THE1A-int LTR MaLR 0 1580 2 2658 83 6 3 chr13 31704626 31704974 -70168195 - THE1A LTR MaLR -6 349 1 1870 153 10 27 chr13 31705025 31705326 -70167843 - AluJo SINE Alu -16 296 1 277 132 0 38 chr13 31705549 31705602 -70167567 - Charlie1 DNA MER1_type -29 2732 2682 729 178 47 8 chr13 31705605 31705734 -70167435 - MER20 DNA MER1_type 0 219 86 1125 143 0 28 chr13 31705737 31705919 -70167250 + FRAM SINE Alu 1 168 -8 297 119 0 119 chr13 31705922 31705989 -70167180 - MER20 DNA MER1_type -160 59 1 1958 149 41 80 chr13 31705989 31706505 -70166664 - Charlie1 DNA MER1_type -75 2686 2191 573 236 115 0 chr13 31706512 31706660 -70166509 - Charlie1a DNA MER1_type -1290 165 1 399 212 119 8 chr13 31707299 31707417 -70165752 + L1ME4a LINE L1 5963 6093 -28 349 203 63 25 chr13 31709677 31709756 -70163413 - L2 LINE L2 -5 3267 3186 370 274 169 16 chr13 31709846 31710101 -70163068 - L1MC4a LINE L1 -1908 5900 5607 375 202 31 101 chr13 31710464 31710593 -70162576 - MIR SINE MIR -5 257 138 * 484 196 78 98 chr13 31710588 31710745 -70162424 - L2 LINE L2 -3 3310 3156 2767 149 126 22 chr13 31710745 31711283 -70161886 - LTR49 LTR ERV1 -1 594 1 484 196 78 98 chr13 31711283 31711329 -70161840 - L2 LINE L2 -157 3156 3111 1343 167 5 9 chr13 31711330 31711574 -70161595 + AluJo SINE Alu 63 305 0 347 273 153 28 chr13 31711576 31711752 -70161417 - L2 LINE L2 -193 3120 2923 2209 207 69 131 chr13 31711755 31712084 -70161085 + MER21B LTR ERV1 1 349 -514 2170 113 0 3 chr13 31712084 31712385 -70160784 - AluSc SINE Alu -9 300 1 2209 207 69 131 chr13 31712385 31712924 -70160245 + MER21B LTR ERV1 349 815 -48 244 224 26 13 chr13 31712950 31713026 -70160143 - L2 LINE L2 -366 2906 2830 * 398 243 24 15 chr13 31713016 31713147 -70160022 - MIR SINE MIR -42 166 35 255 299 209 35 chr13 31713396 31713764 -70159405 - L2 LINE L2 0 3272 2841 3218 60 10 2 chr13 31714227 31714625 -70158544 - MER9 LTR ERVK -110 401 1 3134 198 25 53 chr13 31714647 31715667 -70157502 + MLT-int LTR MaLR 1 1084 -651 1102 147 19 184 chr13 31715672 31716046 -70157123 - MER93b LTR ERV1 -61 312 1 244 333 11 86 chr13 31716076 31716172 -70156997 - MLT1J LTR MaLR -201 310 231 2188 89 3 14 chr13 31716172 31716465 -70156704 - AluSx SINE Alu -22 290 1 244 333 11 86 chr13 31716465 31716542 -70156627 - MLT1J LTR MaLR -280 231 150 551 236 103 24 chr13 31716547 31716749 -70156420 + Charlie8 DNA MER1_type 81 1395 -1022 4419 121 55 19 chr13 31716771 31717475 -70155694 + Tigger1 DNA MER2_type 24 753 -1665 1585 183 25 11 chr13 31717464 31717749 -70155420 + Tigger1 DNA MER2_type 2130 2418 0 * 237 65 0 0 chr13 31717832 31717863 -70155306 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 379 83 42 14 chr13 31718050 31718122 -70155047 + C-rich Low_complexity Low_complexity 4 77 0 1561 154 38 30 chr13 31718136 31718402 -70154767 - AluJb SINE Alu -44 268 1 1472 260 75 72 chr13 31718485 31718584 -70154585 - L2 LINE L2 -2 3311 3214 1749 156 0 27 chr13 31718584 31718885 -70154284 + AluJb SINE Alu 1 293 -19 1472 260 75 72 chr13 31718885 31719657 -70153512 - L2 LINE L2 -99 3214 2446 1852 166 3 0 chr13 31719657 31719941 -70153228 - AluJb SINE Alu -25 287 3 1472 260 75 72 chr13 31719941 31720172 -70152997 - L2 LINE L2 -867 2446 2208 2017 191 6 0 chr13 31720172 31720533 -70152636 + MLT1A1 LTR MaLR 1 363 -2 1472 260 75 72 chr13 31720533 31720736 -70152433 - L2 LINE L2 -1105 2208 2007 427 344 40 9 chr13 31720762 31721091 -70152078 - L2 LINE L2 -1929 1385 1047 22 0 0 0 chr13 31726176 31726198 -70146971 + AT_rich Low_complexity Low_complexity 1 22 0 211 183 118 43 chr13 31726821 31726914 -70146255 + MIR SINE MIR 76 175 -87 1670 173 19 13 chr13 31727088 31727395 -70145774 - AluJb SINE Alu -2 310 2 208 163 61 0 chr13 31727518 31727567 -70145602 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 2192 130 0 7 chr13 31727679 31727986 -70145183 - AluSx SINE Alu -7 305 1 233 250 250 0 chr13 31728165 31728289 -70144880 - MIR SINE MIR -6 256 102 780 122 0 99 chr13 31729164 31729336 -70143833 - AluJb SINE Alu -8 304 150 2107 123 0 17 chr13 31729570 31729872 -70143297 - AluSc SINE Alu -10 299 3 495 265 141 17 chr13 31730138 31730429 -70142740 - L1MC4a LINE L1 -1870 5938 5612 49 52 0 0 chr13 31730530 31730607 -70142562 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr13 31730782 31730804 -70142365 + AT_rich Low_complexity Low_complexity 1 22 0 189 75 125 25 chr13 31731318 31731358 -70141811 + L2 LINE L2 3267 3310 -3 192 217 11 98 chr13 31731482 31731574 -70141595 + MIR SINE MIR 120 203 -59 33080 102 11 55 chr13 31731614 31738051 -70135118 - L1PA7 LINE L1 -1 6153 12 245 94 0 0 chr13 31738132 31738164 -70135005 - L1P3 LINE L1 -5384 1077 1046 1592 94 13 34 chr13 31738557 31738792 -70134377 + MER30 DNA MER1_type 1 230 0 232 195 184 35 chr13 31739529 31739616 -70133553 + MIR SINE MIR 52 151 -111 26 0 0 0 chr13 31741181 31741207 -70131962 + AT_rich Low_complexity Low_complexity 1 26 0 226 250 146 21 chr13 31741461 31741557 -70131612 + MLT1I LTR MaLR 68 175 -234 859 227 152 45 chr13 31741587 31741917 -70131252 + MLT1G1 LTR MaLR 224 588 -7 1182 231 104 22 chr13 31741922 31742286 -70130883 - L1MC4a LINE L1 -1897 5911 5518 404 312 104 35 chr13 31742312 31742687 -70130482 - L1MC4a LINE L1 -748 5398 4998 4395 115 52 11 chr13 31742791 31743498 -70129671 + Tigger3b DNA MER2_type 18 753 -478 832 137 16 16 chr13 31743518 31743642 -70129527 - FRAM SINE Alu -30 146 23 3268 108 13 4 chr13 31743662 31744132 -70129037 + Tigger3b DNA MER2_type 744 1217 -14 1929 143 117 28 chr13 31747041 31747433 -70125736 - MSTC LTR MaLR 0 428 2 23 0 0 0 chr13 31747716 31747739 -70125430 + AT_rich Low_complexity Low_complexity 1 23 0 1737 164 3 30 chr13 31747739 31748043 -70125126 - AluJo SINE Alu -16 296 1 875 162 27 22 chr13 31749367 31749552 -70123617 + MER53 DNA DNA 2 187 -2 542 216 142 17 chr13 31749742 31749918 -70123251 - LTR33A LTR ERVL -55 468 271 506 255 163 0 chr13 31751404 31751557 -70121612 + MER5A DNA MER1_type 12 189 0 526 247 0 81 chr13 31751569 31751638 -70121531 - MER5B DNA MER1_type -1 177 104 2120 99 4 0 chr13 31751638 31751911 -70121258 + AluSg SINE Alu 37 310 0 526 247 0 81 chr13 31751911 31752015 -70121154 - MER5B DNA MER1_type -74 104 18 413 277 18 0 chr13 31754420 31754532 -70118637 + MIR SINE MIR 13 126 -136 1924 127 0 0 chr13 31756719 31756978 -70116191 - AluSq SINE Alu -54 259 1 328 292 25 17 chr13 31757058 31757178 -70115991 - MIR SINE MIR -122 140 20 2383 98 0 0 chr13 31757316 31757622 -70115547 - AluSq SINE Alu -7 306 1 271 362 34 0 chr13 31758103 31758252 -70114917 + MIR3 SINE MIR 25 178 -30 857 194 113 0 chr13 31758741 31758927 -70114242 + MER3 DNA MER1_type 1 207 -2 258 302 307 0 chr13 31759125 31759327 -70113842 - L2 LINE L2 -32 3240 2977 1456 175 86 0 chr13 31760966 31761223 -70111946 - AluJo SINE Alu -33 279 1 27 0 0 0 chr13 31763369 31763396 -70109773 + AT_rich Low_complexity Low_complexity 1 27 0 807 261 43 4 chr13 31763412 31763642 -70109527 - MIR SINE MIR -22 240 2 271 336 83 22 chr13 31764358 31764587 -70108582 - MIR SINE MIR -18 244 2 288 265 60 30 chr13 31766257 31766423 -70106746 + L2 LINE L2 2921 3091 -181 231 346 94 16 chr13 31767595 31767722 -70105447 + L2 LINE L2 3119 3255 -17 229 290 16 0 chr13 31767745 31767807 -70105362 - MIR SINE MIR 0 262 200 339 239 53 44 chr13 31768006 31768119 -70105050 + MIR SINE MIR 126 239 -23 427 344 108 15 chr13 31768381 31768724 -70104445 + L2 LINE L2 1596 1970 -1344 239 313 12 0 chr13 31768764 31768847 -70104322 - L1ME2 LINE L1 -15 6149 6066 1876 279 125 32 chr13 31768899 31770075 -70103094 + L2 LINE L2 2029 3313 0 2049 136 0 0 chr13 31771388 31771695 -70101474 - AluSx SINE Alu 0 309 3 534 147 32 0 chr13 31771947 31772042 -70101127 + MER20 DNA MER1_type 122 219 0 974 153 21 0 chr13 31772184 31772328 -70100841 + FAM SINE Alu 2 148 -37 375 276 129 45 chr13 31773234 31773636 -70099533 - L1ME4a LINE L1 -47 6074 5639 314 264 27 88 chr13 31773664 31773812 -70099357 - MIR SINE MIR -1 261 123 801 266 11 0 chr13 31774492 31774669 -70098500 - MIR SINE MIR -51 211 33 192 358 15 0 chr13 31774800 31774867 -70098302 - L2 LINE L2 -1 3312 3245 186 305 60 109 chr13 31775125 31775509 -70097660 - L2 LINE L2 -338 2976 2612 2022 114 29 16 chr13 31779913 31780219 -70092950 - AluSq SINE Alu 0 313 4 2396 76 3 0 chr13 31780383 31780674 -70092495 + AluSp SINE Alu 20 311 -2 184 302 0 0 chr13 31781129 31781172 -70091997 - MIR SINE MIR -2 260 218 503 258 107 22 chr13 31781181 31781406 -70091763 - L1ME4a LINE L1 -20 6101 5858 204 274 91 70 chr13 31782623 31782809 -70090360 - L2 LINE L2 -545 2769 2580 1765 186 10 10 chr13 31783848 31784154 -70089015 + AluJo SINE Alu 1 306 -6 221 191 21 0 chr13 31785405 31785452 -70087717 - L2 LINE L2 -3 3310 3263 528 293 48 12 chr13 31787245 31787412 -70085757 - MIR SINE MIR -14 248 76 22 35 0 0 chr13 31787870 31787899 -70085270 + AT_rich Low_complexity Low_complexity 1 29 0 624 206 16 0 chr13 31788512 31788638 -70084531 + MER94 DNA DNA 6 133 -1 3659 67 11 60 chr13 31789024 31789558 -70083611 - L1PA7 LINE L1 0 6154 5647 31 68 0 0 chr13 31789786 31789845 -70083324 + AT_rich Low_complexity Low_complexity 1 59 0 201 300 193 20 chr13 31790853 31791003 -70082166 - MIR SINE MIR -79 183 8 2256 117 0 0 chr13 31791468 31791758 -70081411 - AluSc SINE Alu -19 290 1 611 271 0 7 chr13 31792190 31792334 -70080835 + MIR SINE MIR 112 254 -8 415 287 181 37 chr13 31792659 31792875 -70080294 + MIR SINE MIR 16 262 0 318 241 12 0 chr13 31793779 31793862 -70079307 - L1MA8 LINE L1 0 6291 6208 220 180 0 33 chr13 31794012 31794073 -70079096 + C-rich Low_complexity Low_complexity 4 62 0 437 154 65 14 chr13 31794507 31794791 -70078378 + (CA)n Simple_repeat Simple_repeat 1 298 0 255 217 14 14 chr13 31795117 31795186 -70077983 + (TG)n Simple_repeat Simple_repeat 2 70 0 870 119 0 0 chr13 31796271 31796397 -70076772 - FLAM_C SINE Alu -6 137 12 387 157 0 0 chr13 31796902 31796972 -70076197 + C-rich Low_complexity Low_complexity 5 74 0 272 236 0 56 chr13 31796990 31797062 -70076107 + polypyrimidine Low_complexity Low_complexity 3 70 0 1987 194 97 0 chr13 31797639 31798093 -70075076 + MLT1D LTR MaLR 8 505 0 579 171 0 27 chr13 31798148 31798259 -70074910 + AluJb SINE Alu 204 311 -1 255 61 0 0 chr13 31798742 31798775 -70074394 + (CA)n Simple_repeat Simple_repeat 2 34 0 351 282 91 64 chr13 31799801 31800021 -70073148 - L2 LINE L2 -11 3302 3077 187 290 0 0 chr13 31800190 31800252 -70072917 - L2 LINE L2 -559 2755 2694 303 175 0 0 chr13 31800690 31800747 -70072422 + CT-rich Low_complexity Low_complexity 2 58 0 180 276 76 48 chr13 31800756 31800861 -70072308 - L2 LINE L2 -47 3266 3159 335 333 97 46 chr13 31800890 31801127 -70072042 + L1ME4a LINE L1 5653 5901 -269 306 204 68 11 chr13 31801315 31801403 -70071766 + L1ME4a LINE L1 5970 6062 -59 1789 158 3 70 chr13 31801730 31802058 -70071111 + AluJb SINE Alu 1 306 -6 292 221 55 102 chr13 31802897 31803024 -70070145 - MIR3 SINE MIR -25 183 63 293 276 51 83 chr13 31804193 31804349 -70068820 - MIR SINE MIR -1 261 111 1828 241 141 23 chr13 31804389 31804588 -70068581 + MER69B DNA AcHobo 27 201 -2325 2268 94 0 7 chr13 31804588 31804886 -70068283 - AluSc SINE Alu -13 296 1 1828 241 141 23 chr13 31804886 31805750 -70067419 + MER69B DNA AcHobo 201 1218 -8 229 250 67 0 chr13 31805758 31805818 -70067351 - MIR SINE MIR -146 116 53 191 192 19 19 chr13 31805925 31805977 -70067192 - MER5A DNA MER1_type -134 55 4 307 298 26 46 chr13 31806284 31806435 -70066734 + MIR SINE MIR 60 207 -55 224 370 14 0 chr13 31807845 31807918 -70065251 - L2 LINE L2 0 3272 3199 655 275 171 21 chr13 31808408 31808944 -70064225 - L2 LINE L2 -1 3312 2689 182 200 29 0 chr13 31809256 31809291 -70063878 - MIR SINE MIR -20 242 207 383 187 244 24 chr13 31809592 31809715 -70063454 - MLT1H LTR MaLR -4 545 396 2708 191 16 29 chr13 31813033 31813587 -70059582 - MER74A LTR ERVL -9 549 3 397 268 200 0 chr13 31813670 31813860 -70059309 - MLT1H LTR MaLR -321 228 1 238 266 148 8 chr13 31814313 31814441 -70058728 - MIR SINE MIR 0 262 117 883 224 52 14 chr13 31815733 31815943 -70057226 + MER20 DNA MER1_type 1 218 -1 1029 164 102 58 chr13 31816006 31816232 -70056937 - MER46A DNA MER2_type 0 236 1 230 93 0 23 chr13 31816403 31816446 -70056723 + (CAT)n Simple_repeat Simple_repeat 3 44 0 273 167 0 0 chr13 31816607 31816661 -70056508 + (CAT)n Simple_repeat Simple_repeat 3 56 0 342 0 0 0 chr13 31816874 31816912 -70056257 + (CA)n Simple_repeat Simple_repeat 2 39 0 497 245 96 32 chr13 31817810 31817998 -70055171 + LTR16A1 LTR ERVL 4 203 -254 1240 209 18 33 chr13 31817999 31818329 -70054840 - MLT1F LTR MaLR 0 542 218 310 303 62 56 chr13 31818700 31818895 -70054274 + L2 LINE L2 1825 2020 -1294 4323 176 56 60 chr13 31819713 31821489 -70051680 - L1MB7 LINE L1 -5 6179 4433 378 77 0 0 chr13 31821489 31821541 -70051628 - L1MA6 LINE L1 -3 6297 6246 4323 176 56 60 chr13 31821541 31821784 -70051385 - L1MB7 LINE L1 -1751 4433 4190 1372 230 53 98 chr13 31822519 31822600 -70050569 + LTR40a LTR ERVL 1 84 -435 2210 104 17 0 chr13 31822600 31822911 -70050258 - AluSc SINE Alu 0 309 1 2367 107 0 0 chr13 31822912 31823212 -70049957 - AluSx SINE Alu -12 300 1 1372 230 53 98 chr13 31823212 31823343 -70049826 + LTR40a LTR ERVL 84 219 -300 1591 172 92 0 chr13 31823343 31823616 -70049553 + AluJo SINE Alu 1 298 -14 1372 230 53 98 chr13 31823616 31823891 -70049278 + LTR40a LTR ERVL 219 469 -50 422 269 45 32 chr13 31823901 31824057 -70049112 - MER5B DNA MER1_type -20 158 1 3976 101 2 0 chr13 31825627 31826153 -70047016 + MER1A DNA MER1_type 1 527 0 453 266 121 85 chr13 31826331 31826696 -70046473 + MLT1K LTR MaLR 184 561 -27 503 208 167 46 chr13 31827872 31828088 -70045081 - LTR33A LTR ERVL -6 515 254 317 263 97 59 chr13 31828163 31828349 -70044820 - LTR33A LTR ERVL -258 265 73 710 217 53 0 chr13 31829884 31830073 -70043096 - LTR54 LTR ERV1 -7 503 305 737 88 20 0 chr13 31830076 31830178 -70042991 - LTR54B LTR ERV1 -394 104 1 3050 108 9 14 chr13 31830207 31830641 -70042528 - MSTB1 LTR MaLR 0 432 1 2284 107 3 0 chr13 31830892 31831190 -70041979 + AluSp SINE Alu 1 299 -14 1942 153 40 20 chr13 31831219 31831565 -70041604 - MLT1B LTR MaLR -37 353 1 484 280 35 67 chr13 31831595 31831877 -70041292 + L1ME LINE L1 5551 5823 -298 2421 97 0 3 chr13 31831888 31832199 -70040970 + AluSg SINE Alu 1 310 0 2397 87 0 3 chr13 31832487 31832786 -70040383 + AluSq SINE Alu 1 298 -15 2158 216 30 0 chr13 31833618 31834054 -70039115 - MER110 LTR ERV1 0 491 43 1065 234 8 0 chr13 31834266 31834514 -70038655 + MIR SINE MIR 13 262 0 2054 129 63 24 chr13 31835223 31835586 -70037583 + THE1C LTR MaLR 1 375 0 377 272 39 0 chr13 31835691 31835794 -70037375 - MLT1L LTR MaLR -361 254 148 302 229 60 0 chr13 31835880 31835963 -70037206 - MIR SINE MIR -71 191 104 * 739 286 36 0 chr13 31835960 31836184 -70036985 - MIR SINE MIR -2 260 29 750 258 149 69 chr13 31837062 31838019 -70035150 + LTR27 LTR ERV1 7 1755 0 254 72 29 43 chr13 31838042 31838111 -70035058 + (TTTTA)n Simple_repeat Simple_repeat 2 69 0 192 264 0 0 chr13 31838637 31838690 -70034479 + L2 LINE L2 3261 3313 0 2041 189 17 3 chr13 31838928 31839288 -70033881 - MLT1A1 LTR MaLR 0 365 1 207 375 0 0 chr13 31839728 31839816 -70033353 - L3b LINE CR1 -324 1259 1172 1055 82 0 7 chr13 31839881 31840027 -70033142 - L1PB1 LINE L1 -2 6149 6005 1913 138 33 74 chr13 31842207 31842377 -70030792 + THE1C LTR MaLR 1 176 -199 195 42 0 0 chr13 31842377 31842401 -70030768 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2122 108 0 0 chr13 31842403 31842682 -70030487 - AluY SINE Alu -32 279 1 1913 138 33 74 chr13 31842682 31842899 -70030270 + THE1C LTR MaLR 177 375 0 351 209 58 0 chr13 31843411 31843497 -70029672 - L2 LINE L2 -13 3259 3169 800 226 80 19 chr13 31845501 31845713 -70027456 + MIR SINE MIR 20 244 -18 276 306 28 46 chr13 31846356 31846464 -70026705 - L2 LINE L2 -1 3271 3166 1122 276 121 35 chr13 31846466 31846952 -70026217 - LTR67 LTR ERVL -12 545 18 294 422 14 0 chr13 31847044 31847262 -70025907 - L2 LINE L2 -189 3083 2863 * 333 263 0 0 chr13 31847259 31847335 -70025834 + MER5A DNA MER1_type 114 189 0 4079 234 133 56 chr13 31847336 31848979 -70024190 - HAL1 LINE L1 -171 2336 567 534 16 0 0 chr13 31848982 31849045 -70024124 + (TG)n Simple_repeat Simple_repeat 2 64 0 2305 181 102 40 chr13 31849053 31849424 -70023745 - MLT1F LTR MaLR -3 539 128 1898 56 0 0 chr13 31849424 31849638 -70023531 + AluY SINE Alu 84 297 -14 2305 181 102 40 chr13 31849638 31849768 -70023401 - MLT1F LTR MaLR -414 128 7 1509 287 88 20 chr13 31849794 31850352 -70022817 - HAL1 LINE L1 -1907 600 5 283 269 43 21 chr13 31850641 31850734 -70022435 - MER65A LTR ERV1 -350 95 1 2446 74 0 0 chr13 31851046 31851342 -70021827 + AluSg SINE Alu 1 296 -14 243 277 69 30 chr13 31851642 31851743 -70021426 + MIR3 SINE MIR 98 202 -6 291 338 12 23 chr13 31853454 31853653 -70019516 + MIR SINE MIR 20 212 -50 529 237 97 14 chr13 31856059 31856381 -70016788 + L1ME2 LINE L1 5584 5951 -213 291 211 32 11 chr13 31856673 31856768 -70016401 + GA-rich Low_complexity Low_complexity 1 97 0 384 59 0 0 chr13 31857120 31857171 -70015998 + (TG)n Simple_repeat Simple_repeat 1 51 0 200 295 13 0 chr13 31857201 31857279 -70015890 + L2 LINE L2 2407 2485 -829 183 352 0 14 chr13 31858226 31858297 -70014872 + L2 LINE L2 3200 3269 -3 1787 199 73 11 chr13 31858956 31859393 -70013776 - L1M4c LINE L1 -4876 1770 1307 2019 176 44 63 chr13 31859414 31859892 -70013277 - L1MA9 LINE L1 -103 6209 5741 304 218 35 46 chr13 31859975 31860062 -70013107 - L1MC4 LINE L1 -1340 6702 6617 189 171 0 0 chr13 31860077 31860112 -70013057 + (TA)n Simple_repeat Simple_repeat 2 36 0 2931 195 51 111 chr13 31860129 31860173 -70012996 - L1M4c LINE L1 -5271 1271 1226 1752 161 23 20 chr13 31860173 31860472 -70012697 - AluJb SINE Alu -12 300 1 2931 195 51 111 chr13 31860472 31860628 -70012541 - L1M4c LINE L1 -5316 1226 1062 1918 121 7 36 chr13 31860628 31860935 -70012234 + AluJo SINE Alu 1 298 -14 2931 195 51 111 chr13 31860935 31861276 -70011893 - L1M4c LINE L1 -5480 1062 702 417 20 0 0 chr13 31861276 31861326 -70011843 + (TG)n Simple_repeat Simple_repeat 2 51 0 2931 195 51 111 chr13 31861326 31861787 -70011382 - L1M4c LINE L1 -5840 702 328 1406 177 44 51 chr13 31861891 31862219 -70010950 + MER61B LTR ERV1 2 425 0 2676 244 63 24 chr13 31862219 31863400 -70009769 - L1MEc LINE L1 -3143 2986 1796 232 324 80 6 chr13 31863411 31863587 -70009582 - L1MEc LINE L1 -4579 1731 1543 331 253 141 32 chr13 31863920 31864169 -70009000 - L1MEc LINE L1 -4755 1555 1280 2297 192 75 105 chr13 31864204 31864919 -70008250 + LTR8A LTR ERV1 34 727 0 305 289 59 40 chr13 31864937 31865311 -70007858 - L1MEc LINE L1 -4909 1210 830 715 262 58 9 chr13 31866027 31866252 -70006917 - MIR SINE MIR -3 259 24 806 209 118 24 chr13 31866857 31867144 -70006025 - L1ME4a LINE L1 -2 6119 5806 2220 156 62 29 chr13 31867202 31867394 -70005775 + Tigger2a DNA MER2_type 3 187 -2521 2261 118 0 10 chr13 31867394 31867708 -70005461 - AluSx SINE Alu -1 311 1 2220 156 62 29 chr13 31867708 31867933 -70005236 + Tigger2a DNA MER2_type 187 434 0 2267 73 13 13 chr13 31867935 31868235 -70004934 - AluSq SINE Alu -13 300 1 246 238 79 0 chr13 31868392 31868455 -70004714 + L2 LINE L2 3191 3258 -55 2332 265 18 8 chr13 31868458 31869010 -70004159 + L1MC4 LINE L1 5269 5829 -1979 2340 119 0 0 chr13 31869010 31869320 -70003849 + AluSg SINE Alu 1 310 0 2332 265 18 8 chr13 31869320 31869383 -70003786 + L1MC4 LINE L1 5829 5890 -1918 1470 178 12 10 chr13 31869400 31869748 -70003421 - AluJo SINE Alu -30 282 32 227 263 35 0 chr13 31870170 31870227 -70002942 + L1MC4 LINE L1 6708 6766 -1276 34 24 0 0 chr13 31870257 31870298 -70002871 + AT_rich Low_complexity Low_complexity 1 41 0 279 240 0 27 chr13 31870637 31870712 -70002457 + L1M4 LINE L1 4548 4620 -1526 811 188 61 18 chr13 31870729 31870894 -70002275 - AluJo SINE Alu -136 176 5 1651 182 82 0 chr13 31871321 31871650 -70001519 - L1MB2 LINE L1 -1 6170 5815 248 259 190 9 chr13 31872468 31872584 -70000585 + MIR SINE MIR 28 164 -98 398 278 8 24 chr13 31872622 31872748 -70000421 + LTR33A LTR ERVL 343 466 -57 713 216 0 0 chr13 31873212 31873334 -69999835 - Tigger3b DNA MER2_type -2 1229 1108 1817 143 82 10 chr13 31873334 31873627 -69999542 - MER1B DNA MER1_type 0 339 26 * 3619 102 39 47 chr13 31873618 31874584 -69998585 - Tigger3b DNA MER2_type -143 1088 1 264 258 144 0 chr13 31874722 31874819 -69998350 + MER96 DNA MER1_type? 57 167 -8 364 274 67 0 chr13 31874919 31875054 -69998115 + MER5A DNA MER1_type 1 144 -45 343 319 57 6 chr13 31875135 31875292 -69997877 - L3 LINE CR1 -149 1428 1264 240 214 0 0 chr13 31876577 31876633 -69996536 + (TA)n Simple_repeat Simple_repeat 2 57 0 758 199 112 15 chr13 31876729 31876925 -69996244 - MER20 DNA MER1_type -4 215 1 393 302 47 19 chr13 31877633 31877848 -69995321 + L1ME LINE L1 5348 5568 -594 445 132 13 0 chr13 31880415 31880491 -69992678 + MIR SINE MIR 77 153 -109 389 239 74 1 chr13 31880672 31880776 -69992393 + MIR SINE MIR 37 146 -62 453 290 68 14 chr13 31881792 31881999 -69991170 + MIR SINE MIR 33 250 -12 241 262 36 0 chr13 31882020 31882104 -69991065 + MIR SINE MIR 59 145 -117 307 194 15 0 chr13 31883140 31883207 -69989962 + L2 LINE L2 3228 3295 -18 213 316 67 31 chr13 31883851 31884076 -69989093 + L2 LINE L2 2745 2977 -337 755 243 151 61 chr13 31884104 31884451 -69988718 + L1MC4 LINE L1 7121 7505 -303 1743 163 138 9 chr13 31884451 31884800 -69988369 - MSTD LTR MaLR -2 394 1 755 243 151 61 chr13 31884800 31884992 -69988177 + L1MC4 LINE L1 7505 7678 -130 2330 79 7 16 chr13 31885313 31885618 -69987551 + AluSc SINE Alu 1 302 -7 243 280 159 24 chr13 31887641 31887848 -69985321 + L2 LINE L2 2859 3093 -179 1755 174 7 13 chr13 31889391 31889690 -69983479 - AluJo SINE Alu -13 299 3 380 305 34 56 chr13 31890217 31890450 -69982719 - MIR SINE MIR -1 261 34 1124 206 128 7 chr13 31890543 31890825 -69982344 - MER34 LTR ERV1 0 542 227 661 210 32 124 chr13 31891280 31891406 -69981763 + L1MC5 LINE L1 6820 6956 -1005 2026 144 34 3 chr13 31891406 31891732 -69981437 + L1MC1 LINE L1 5998 6333 0 2336 96 6 13 chr13 31891742 31892056 -69981113 + AluSq SINE Alu 1 312 -1 661 210 32 124 chr13 31892056 31892474 -69980695 + L1MC5 LINE L1 6965 7224 -737 597 284 83 53 chr13 31892650 31893157 -69980012 + L1MC5 LINE L1 7311 7832 -129 340 281 42 21 chr13 31893562 31893725 -69979444 + MIR SINE MIR 53 216 -46 386 296 25 26 chr13 31894984 31895144 -69978025 + MIR3 SINE MIR 2 160 -48 567 210 34 0 chr13 31895158 31895277 -69977892 - L1MA9 LINE L1 -22 6290 6168 192 40 0 0 chr13 31895278 31895303 -69977866 + (TG)n Simple_repeat Simple_repeat 1 25 0 261 0 0 0 chr13 31895307 31895336 -69977833 + (GA)n Simple_repeat Simple_repeat 2 30 0 1550 172 12 16 chr13 31895341 31895662 -69977507 + MLT1A1 LTR MaLR 12 365 0 203 129 32 177 chr13 31895662 31895724 -69977445 + MIR3 SINE MIR 145 197 -11 402 21 0 0 chr13 31897675 31897722 -69975447 + (TG)n Simple_repeat Simple_repeat 1 47 0 350 325 8 0 chr13 31897788 31897905 -69975264 - MIR3 SINE MIR -10 198 81 288 300 45 18 chr13 31898828 31898938 -69974231 - MIR SINE MIR -77 131 19 1523 210 108 16 chr13 31899256 31899699 -69973470 - L1M4 LINE L1 -2007 4139 3656 2850 0 0 3 chr13 31899707 31900009 -69973160 - AluYa5 SINE Alu -10 301 1 3000 160 57 51 chr13 31900019 31900515 -69972654 - L1MB7 LINE L1 0 6184 5692 6570 112 84 26 chr13 31900515 31901675 -69971494 + Tigger3b DNA MER2_type 3 1230 -1 3000 160 57 51 chr13 31901675 31901826 -69971343 - L1MB7 LINE L1 -492 5692 5529 2223 98 0 7 chr13 31901826 31902151 -69971018 + AluSq SINE Alu 1 323 0 3000 160 57 51 chr13 31902151 31902187 -69970982 - L1MB7 LINE L1 -655 5529 5495 1396 143 70 11 chr13 31902285 31902557 -69970612 - L1MB3 LINE L1 -2 6181 5894 310 91 0 0 chr13 31902557 31902601 -69970568 - AluJo SINE Alu -4 296 253 228 333 29 38 chr13 31903116 31903326 -69969843 + L2 LINE L2 2871 3078 -194 1781 166 4 0 chr13 31903846 31904123 -69969046 - AluJo SINE Alu -34 278 1 183 175 0 25 chr13 31904561 31904601 -69968568 + MIR3 SINE MIR 161 199 -9 1609 163 7 2 chr13 31906693 31906982 -69966187 + MER1B DNA MER1_type 3 339 0 1767 156 14 0 chr13 31908582 31908864 -69964305 - AluJb SINE Alu -26 286 1 1058 167 0 12 chr13 31909193 31909361 -69963808 - FRAM SINE Alu 0 166 1 235 316 41 0 chr13 31910394 31910492 -69962677 + MIR3 SINE MIR 96 197 -11 313 211 92 0 chr13 31912534 31912610 -69960559 - L2 LINE L2 -2 3270 3188 380 267 58 61 chr13 31913039 31913339 -69959830 + L1PA8A LINE L1 5267 5567 -564 2115 108 10 26 chr13 31913653 31913960 -69959209 - AluSx SINE Alu -10 302 1 270 56 0 0 chr13 31913979 31914015 -69959154 + (CA)n Simple_repeat Simple_repeat 2 37 0 278 258 76 38 chr13 31914175 31914307 -69958862 + L1ME4a LINE L1 5955 6091 -30 30 59 0 0 chr13 31915914 31915965 -69957204 + AT_rich Low_complexity Low_complexity 1 51 0 315 223 7 43 chr13 31915968 31916107 -69957062 + T-rich Low_complexity Low_complexity 5 138 0 429 104 0 0 chr13 31916144 31916221 -69956948 + (T)n Simple_repeat Simple_repeat 1 77 0 472 213 41 0 chr13 31917576 31917698 -69955471 + LTR37A LTR ERV1 298 424 -2 1847 183 37 12 chr13 31919273 31919682 -69953487 - Charlie1b DNA MER1_type 0 523 105 21 0 0 0 chr13 31920028 31920049 -69953120 + AT_rich Low_complexity Low_complexity 1 21 0 2483 178 58 17 chr13 31920166 31920645 -69952524 - LTR10B LTR ERV1 0 505 7 1889 164 4 0 chr13 31920793 31921074 -69952095 + AluJb SINE Alu 6 287 -25 1258 234 80 92 chr13 31921613 31922372 -69950797 + MER31-int LTR ERV1 3327 4076 -860 1794 108 112 22 chr13 31922377 31922654 -69950515 + AluSg SINE Alu 9 310 0 234 0 0 0 chr13 31922853 31922879 -69950290 + (T)n Simple_repeat Simple_repeat 1 26 0 558 231 98 69 chr13 31922991 31923337 -69949832 + LTR37A LTR ERV1 19 374 -52 905 203 17 11 chr13 31924031 31924208 -69948961 - MER45A DNA AcHobo 0 178 1 407 273 36 27 chr13 31924895 31925005 -69948164 + L2 LINE L2 3162 3272 0 381 319 29 48 chr13 31925135 31925345 -69947824 - MIR SINE MIR -43 219 14 2405 81 0 0 chr13 31927888 31928184 -69944985 - AluSg SINE Alu -14 296 1 245 319 14 0 chr13 31930064 31930136 -69943033 + MIR SINE MIR 87 159 -103 233 175 0 0 chr13 31930183 31930223 -69942946 + MIR SINE MIR 156 195 -67 22 35 0 0 chr13 31930433 31930462 -69942707 + AT_rich Low_complexity Low_complexity 1 29 0 486 249 266 33 chr13 31930948 31931189 -69941980 + L2 LINE L2 2996 3292 -21 289 229 16 0 chr13 31931333 31931394 -69941775 + MIR SINE MIR 177 238 -24 2414 83 0 0 chr13 31931826 31932127 -69941042 + AluSg SINE Alu 1 301 -9 1103 229 29 12 chr13 31932226 31932466 -69940703 + MIR SINE MIR 19 262 0 357 244 33 0 chr13 31932909 31932999 -69940170 - L2 LINE L2 -9 3263 3171 314 336 149 24 chr13 31933148 31933356 -69939813 + L2 LINE L2 3030 3263 -9 756 180 11 60 chr13 31933894 31934077 -69939092 + L1MB4 LINE L1 6007 6180 0 21 57 0 0 chr13 31934083 31934118 -69939051 + AT_rich Low_complexity Low_complexity 1 35 0 557 343 96 10 chr13 31934750 31935158 -69938011 + L2 LINE L2 2362 2804 -510 2258 117 0 3 chr13 31935280 31935579 -69937590 + AluSx SINE Alu 1 298 -14 180 322 34 17 chr13 31935749 31935808 -69937361 + L2 LINE L2 3197 3256 -57 2086 121 38 0 chr13 31936197 31936486 -69936683 + AluSx SINE Alu 1 300 -12 293 314 55 92 chr13 31937711 31938093 -69935076 + L2 LINE L2 2812 3179 -93 252 330 84 82 chr13 31938143 31938467 -69934702 - L2 LINE L2 -1201 2113 1791 2023 121 15 15 chr13 31938467 31938806 -69934363 + L1MB3 LINE L1 5838 6176 -7 252 330 84 82 chr13 31938806 31939500 -69933669 - L2 LINE L2 -1523 1791 1093 491 291 99 50 chr13 31941004 31941670 -69931499 + L1M4 LINE L1 4417 5115 -1031 235 241 105 8 chr13 31941684 31941817 -69931352 + L1M4 LINE L1 5198 5343 -803 660 148 111 19 chr13 31941856 31942018 -69931151 + MER68 LTR ERV1 1 177 -385 1620 123 104 4 chr13 31942134 31942385 -69930784 - AluSx SINE Alu -36 276 1 1429 138 39 4 chr13 31942385 31942639 -69930530 - L1MB3 LINE L1 -280 5903 5641 2441 246 85 73 chr13 31942649 31943511 -69929658 - L1MEd LINE L1 -2304 4078 3228 439 233 95 0 chr13 31943511 31943522 -69929647 - FLAM_C SINE Alu -182 130 121 17602 46 3 1 chr13 31943522 31946498 -69926671 - L1PA5 LINE L1 -2 6152 3176 439 233 95 0 chr13 31946498 31946602 -69926567 - FLAM_C SINE Alu -191 121 4 2441 246 85 73 chr13 31946602 31947470 -69925699 - L1MEd LINE L1 -3154 3228 2254 1427 220 48 0 chr13 31947470 31947765 -69925404 - AluJo SINE Alu -3 309 1 2441 246 85 73 chr13 31947765 31947793 -69925376 - L1MEd LINE L1 -4128 2254 2228 460 97 0 0 chr13 31947794 31947856 -69925313 + Alu SINE Alu 1 62 -256 1046 119 80 28 chr13 31947857 31948033 -69925136 + AluSg/x SINE Alu 128 312 0 1319 247 72 17 chr13 31948036 31948522 -69924647 - L1MEd LINE L1 -4328 2235 1563 1831 159 4 0 chr13 31948522 31948798 -69924371 + AluJo SINE Alu 6 282 -30 1319 247 72 17 chr13 31948798 31948814 -69924355 - L1MEd LINE L1 -5000 1563 1549 964 321 68 44 chr13 31948846 31949755 -69923414 - L1MEd LINE L1 -5096 1276 346 435 292 111 37 chr13 31949907 31950150 -69923019 + L3 LINE CR1 585 845 -732 1062 139 22 0 chr13 31950211 31950391 -69922778 + L1MA3 LINE L1 6122 6305 0 1438 178 113 106 chr13 31950554 31951092 -69922077 - MLT1F LTR MaLR 0 542 1 26 74 0 0 chr13 31951155 31951209 -69921960 + AT_rich Low_complexity Low_complexity 1 54 0 323 319 11 0 chr13 31951375 31951469 -69921700 + L3 LINE CR1 1245 1339 -238 258 424 93 0 chr13 31951478 31951629 -69921540 + L2 LINE L2 3102 3266 -6 302 246 251 42 chr13 31951649 31951816 -69921353 + L3 LINE CR1 1342 1543 -34 331 294 135 43 chr13 31952056 31952219 -69920950 + MIR SINE MIR 2 179 -83 258 215 31 46 chr13 31952840 31952905 -69920264 + L2 LINE L2 3188 3251 -21 2226 107 10 0 chr13 31953646 31953946 -69919223 - AluSx SINE Alu -9 303 1 303 266 21 11 chr13 31954047 31954141 -69919028 + Zaphod DNA AcHobo 8 102 -3929 22 35 0 0 chr13 31954298 31954327 -69918842 + AT_rich Low_complexity Low_complexity 1 29 0 2404 97 0 0 chr13 31954436 31954735 -69918434 - AluSg SINE Alu -11 299 1 308 279 101 17 chr13 31954900 31954997 -69918172 - L1MC4a LINE L1 -460 5661 5738 2388 81 0 3 chr13 31954997 31955292 -69917877 - AluSp SINE Alu -19 294 1 308 279 101 17 chr13 31955292 31955509 -69917660 - L1MC4a LINE L1 -382 5739 5542 51 86 0 0 chr13 31955813 31955941 -69917228 + AT_rich Low_complexity Low_complexity 1 128 0 312 173 27 27 chr13 31955970 31956087 -69917082 + T-rich Low_complexity Low_complexity 1 117 0 49 18 0 0 chr13 31956123 31956179 -69916990 + AT_rich Low_complexity Low_complexity 1 56 0 351 318 56 17 chr13 31956788 31956967 -69916202 - L1MC4a LINE L1 -809 5337 5152 396 321 16 0 chr13 31957416 31957609 -69915560 - L1MC4a LINE L1 -2303 3843 3648 690 287 121 5 chr13 31957610 31957833 -69915336 + MIR SINE MIR 8 256 -6 692 261 61 48 chr13 31957979 31958134 -69915035 - L1ME4a LINE L1 -223 5898 5747 2004 164 0 3 chr13 31958134 31958433 -69914736 - AluJb SINE Alu -14 298 1 692 261 61 48 chr13 31958433 31958653 -69914516 - L1ME4a LINE L1 -374 5747 5518 227 307 37 32 chr13 31959100 31959289 -69913880 - L1ME4a LINE L1 -1155 4991 4802 42136 37 4 1 chr13 31959453 31965586 -69907583 + L1PA3 LINE L1 1 6153 -2 911 148 60 5 chr13 31965605 31965822 -69907347 - Charlie1 DNA MER1_type -114 2647 2419 473 171 0 0 chr13 31965820 31965902 -69907267 - Charlie1 DNA MER1_type -2621 140 59 * 291 344 5 77 chr13 31967151 31967346 -69905823 - MIR3 SINE MIR -14 194 14 774 261 76 83 chr13 31968204 31968599 -69904570 + L2 LINE L2 2917 3308 -5 38 68 0 0 chr13 31968636 31968709 -69904460 + AT_rich Low_complexity Low_complexity 1 73 0 24 0 0 0 chr13 31968718 31968742 -69904427 + AT_rich Low_complexity Low_complexity 1 24 0 521 284 111 13 chr13 31969418 31969643 -69903526 - MIR SINE MIR 0 262 16 2568 127 35 24 chr13 31970031 31970457 -69902712 + Tigger2a DNA MER2_type 4 434 0 211 301 151 35 chr13 31970913 31971199 -69901970 - L2 LINE L2 -668 2646 2327 930 224 92 4 chr13 31973030 31973258 -69899911 - MIR SINE MIR -10 252 5 280 318 64 18 chr13 31973295 31973405 -69899764 - L2 LINE L2 0 3272 3158 676 194 116 7 chr13 31975218 31975373 -69897796 + MLT1C LTR MaLR 6 177 -290 1730 161 10 10 chr13 31975381 31975680 -69897489 + AluJo SINE Alu 1 299 -13 812 219 0 0 chr13 31975688 31975834 -69897335 + FRAM SINE Alu 1 140 -36 951 206 130 8 chr13 31975874 31976121 -69897048 + MLT1C LTR MaLR 187 463 -4 1291 255 90 14 chr13 31979204 31979823 -69893346 - MER115 DNA AcHobo -1 692 1 6304 146 17 19 chr13 31982854 31983699 -69889470 + L1PB1 LINE L1 4271 5116 -1035 2227 127 0 0 chr13 31983699 31984006 -69889163 + AluSx SINE Alu 1 307 -5 6304 146 17 19 chr13 31984006 31985052 -69888117 + L1PB1 LINE L1 5116 6151 0 444 37 0 0 chr13 31985245 31985299 -69887870 + (TG)n Simple_repeat Simple_repeat 1 54 0 1622 42 0 0 chr13 31985775 31985967 -69887202 + AluYa5 SINE Alu 119 310 -1 301 262 29 84 chr13 31986139 31986392 -69886777 - L1MEd LINE L1 -4924 1195 956 1745 138 17 38 chr13 31986392 31986706 -69886463 - AluJb SINE Alu 0 308 1 301 262 29 84 chr13 31986706 31986726 -69886443 - L1MEd LINE L1 -5163 956 936 2443 80 10 0 chr13 31986789 31987088 -69886081 - AluSc SINE Alu -7 302 1 1160 135 26 10 chr13 31987178 31987371 -69885798 - L1MB4 LINE L1 0 6180 5985 273 333 12 0 chr13 31987494 31987578 -69885591 - L2 LINE L2 -20 3252 3168 327 295 57 0 chr13 31989918 31990023 -69883146 + L2 LINE L2 2207 2317 -997 227 265 86 152 chr13 31990308 31990749 -69882420 + L2 LINE L2 2861 3272 0 1738 174 47 19 chr13 31990980 31991302 -69881867 - MER2 DNA MER2_type 0 345 15 1724 178 33 69 chr13 31991302 31991594 -69881575 - MER7A DNA MER2_type -2692 346 70 1642 167 3 39 chr13 31991594 31991900 -69881269 + AluJo SINE Alu 10 304 -8 1724 178 33 69 chr13 31991900 31991967 -69881202 - MER7A DNA MER2_type -2968 70 2 900 108 15 15 chr13 31992730 31992860 -69880309 + L1PA8A LINE L1 6000 6129 -2 2139 141 0 0 chr13 31992977 31993282 -69879887 + AluSx SINE Alu 1 305 -7 2735 43 3 18 chr13 31993538 31993865 -69879304 - L1PA4 LINE L1 0 6155 5834 39093 49 6 2 chr13 31993865 31998663 -69874506 - L1PA4 LINE L1 -1328 4818 3 6090 227 140 14 chr13 31999104 32001668 -69871501 - L1M4 LINE L1 -1777 4867 1876 2203 188 79 76 chr13 32001681 32002403 -69870766 - L1M4 LINE L1 -5003 1539 816 262 259 24 12 chr13 32002635 32002720 -69870449 - L1M4 LINE L1 -6455 87 2 2119 122 0 0 chr13 32003016 32003340 -69869829 - AluSx SINE Alu 0 324 1 2113 107 10 10 chr13 32004319 32004610 -69868559 - AluSx SINE Alu -21 291 1 26 0 0 0 chr13 32005478 32005504 -69867665 + AT_rich Low_complexity Low_complexity 1 26 0 2185 100 17 10 chr13 32006056 32006379 -69866790 - AluSx SINE Alu 0 312 1 208 111 139 0 chr13 32006815 32006851 -69866318 + L2 LINE L2 3267 3307 -6 577 178 31 0 chr13 32007001 32007106 -69866063 + MER5A DNA MER1_type 4 112 -77 709 175 0 98 chr13 32007128 32007271 -69865898 + FLAM_C SINE Alu 1 129 -4 227 379 0 11 chr13 32007445 32007532 -69865637 - L2 LINE L2 -10 3262 3177 420 357 47 8 chr13 32009012 32009141 -69864028 - L2 LINE L2 -5 3267 3134 226 296 56 28 chr13 32011054 32011162 -69862007 + MIR3 SINE MIR 5 115 -93 2361 67 40 0 chr13 32011993 32012292 -69860877 - AluYa5 SINE Alu 0 311 1 21 0 0 0 chr13 32015404 32015425 -69857744 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 32016984 32017005 -69856164 + AT_rich Low_complexity Low_complexity 1 21 0 180 281 141 0 chr13 32017710 32017774 -69855395 - MIR3 SINE MIR -10 198 126 442 194 39 54 chr13 32018695 32018824 -69854345 + MIR SINE MIR 103 229 -33 192 323 158 0 chr13 32018865 32018998 -69854171 - MIR3 SINE MIR -54 154 1 300 323 21 0 chr13 32019877 32019970 -69853199 + L2 LINE L2 3161 3255 -17 1374 98 25 102 chr13 32019982 32020217 -69852952 + AluSq SINE Alu 10 226 -87 2023 154 40 9 chr13 32020754 32021104 -69852065 - MER46B DNA MER2_type 0 236 1 350 138 31 15 chr13 32021740 32021805 -69851364 - MLT1D LTR MaLR -15 490 425 893 217 35 28 chr13 32023540 32023954 -69849215 - MLT1D LTR MaLR -64 441 1 338 304 62 78 chr13 32024643 32024950 -69848219 + HAL1b LINE L1 1186 6117 -4 258 228 107 60 chr13 32025097 32025246 -69847923 + L1ME4a LINE L1 5964 6119 -2 256 283 22 0 chr13 32025421 32025513 -69847656 + MIR SINE MIR 7 100 -162 343 267 86 9 chr13 32026187 32026292 -69846877 + L1MCa LINE L1 1958 2070 -4356 223 200 44 0 chr13 32026318 32026363 -69846806 - MIR SINE MIR -86 122 76 2305 96 0 0 chr13 32027235 32027547 -69845622 + AluSx SINE Alu 3 314 0 561 291 234 23 chr13 32028699 32029917 -69843252 - L2 LINE L2 -1 3312 1836 1122 226 69 67 chr13 32030859 32031338 -69841831 - L1ME1 LINE L1 -50 6116 5637 332 286 111 8 chr13 32031350 32031476 -69841693 - MIR SINE MIR -74 188 50 237 264 243 0 chr13 32031603 32031751 -69841418 - L2 LINE L2 -167 3105 2922 189 304 18 18 chr13 32032222 32032278 -69840891 + L2 LINE L2 3204 3259 -13 2268 117 0 0 chr13 32032284 32032574 -69840595 + AluSx SINE Alu 1 290 -22 335 213 39 87 chr13 32033018 32033145 -69840024 + MLT1H LTR MaLR 429 549 0 297 252 205 16 chr13 32033225 32033352 -69839817 + MIR SINE MIR 111 261 -1 377 256 84 78 chr13 32034852 32035043 -69838126 + MIR SINE MIR 15 206 -56 347 270 76 45 chr13 32035048 32035316 -69837853 + L1MC4 LINE L1 1948 6994 -159 923 210 60 0 chr13 32035383 32035550 -69837619 + MER45A DNA AcHobo 2 178 0 1838 144 3 52 chr13 32035907 32036213 -69836956 + AluJo SINE Alu 3 293 -19 180 237 0 0 chr13 32036622 32036660 -69836509 - L3 LINE CR1 -2 1575 1538 908 183 21 31 chr13 32036699 32036890 -69836279 - MER5A DNA MER1_type 0 189 1 1058 150 75 4 chr13 32037725 32037965 -69835204 - MER33 DNA MER1_type -34 290 34 333 266 133 21 chr13 32038661 32038804 -69834365 - HAL1b LINE L1 -3 1345 1187 23 33 0 0 chr13 32038810 32038840 -69834329 + AT_rich Low_complexity Low_complexity 1 30 0 4614 144 29 39 chr13 32038948 32039728 -69833441 - L1MB1 LINE L1 -1 6167 5396 2162 121 0 22 chr13 32039728 32040041 -69833128 - AluSx SINE Alu -6 306 1 4614 144 29 39 chr13 32040041 32040161 -69833008 - L1MB1 LINE L1 -772 5396 5276 476 143 0 12 chr13 32041974 32042058 -69831111 + L1MC3 LINE L1 7322 7404 -381 192 200 0 0 chr13 32042719 32042769 -69830400 + (TAA)n Simple_repeat Simple_repeat 1 50 0 668 179 75 12 chr13 32042870 32043043 -69830126 - LTR33A LTR ERVL -46 477 294 316 261 0 11 chr13 32043074 32043162 -69830007 - LTR33 LTR ERVL -317 204 118 181 239 65 22 chr13 32043322 32043368 -69829801 + L2 LINE L2 3175 3222 -50 364 275 55 0 chr13 32043411 32043520 -69829649 - MIR SINE MIR -113 149 35 749 249 12 0 chr13 32044516 32044681 -69828488 + MER45A DNA AcHobo 12 178 0 346 200 352 8 chr13 32045564 32045689 -69827480 + MER5B DNA MER1_type 10 177 -1 693 264 7 0 chr13 32047519 32047674 -69825495 + MER91B DNA MER1_type 24 179 -11 699 260 73 5 chr13 32048325 32048517 -69824652 + MIR SINE MIR 43 247 -15 2280 99 0 3 chr13 32048530 32048823 -69824346 - AluSx SINE Alu -18 294 3 342 0 0 0 chr13 32049507 32049545 -69823624 + (CA)n Simple_repeat Simple_repeat 1 38 0 460 235 206 7 chr13 32049602 32049738 -69823431 + MER5A DNA MER1_type 11 173 -16 554 260 20 14 chr13 32050578 32050724 -69822445 + MER5B DNA MER1_type 29 175 -3 30 0 0 0 chr13 32051343 32051373 -69821796 + GC_rich Low_complexity Low_complexity 1 30 0 448 284 147 0 chr13 32052793 32052990 -69820179 + MIR SINE MIR 31 256 -6 273 214 0 0 chr13 32053272 32053328 -69819841 + MIR SINE MIR 36 91 -117 700 284 116 4 chr13 32053336 32053561 -69819608 - MIR SINE MIR -10 252 3 435 259 19 9 chr13 32053567 32053675 -69819494 + MIR3 SINE MIR 94 202 -6 237 65 0 0 chr13 32053978 32054009 -69819160 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 293 86 21 chr13 32055282 32055428 -69817741 + MIR SINE MIR 22 191 -68 206 240 120 0 chr13 32055436 32055486 -69817683 - L2 LINE L2 -1 3312 3257 * 510 263 46 13 chr13 32055464 32055616 -69817553 - MIR SINE MIR -93 169 13 4197 149 27 19 chr13 32055987 32056732 -69816437 - L1MB3 LINE L1 -2 6181 5431 1939 68 81 0 chr13 32056896 32057144 -69816025 - AluY SINE Alu -17 294 27 307 289 49 88 chr13 32057560 32057631 -69815538 + L1ME4a LINE L1 5847 5919 -202 2518 75 0 3 chr13 32057631 32057937 -69815232 - AluSc SINE Alu -4 305 1 307 289 49 88 chr13 32057937 32058149 -69815020 + L1ME4a LINE L1 5919 6119 -2 694 254 58 55 chr13 32058243 32058640 -69814529 - LTR16A1 LTR ERVL 0 457 60 1307 254 6 3 chr13 32059382 32059712 -69813457 + LTR53 LTR ERVL 189 519 0 1519 171 6 105 chr13 32059894 32060228 -69812941 + AluJo SINE Alu 1 301 -1 217 247 137 0 chr13 32060960 32061033 -69812136 - MER5A DNA MER1_type -105 84 2 550 171 0 0 chr13 32061789 32061871 -69811298 - FRAM SINE Alu -19 157 76 291 71 0 0 chr13 32063979 32064021 -69809148 + (TG)n Simple_repeat Simple_repeat 1 42 0 209 239 84 42 chr13 32065864 32065935 -69807234 - MIR SINE MIR -36 226 153 428 211 55 16 chr13 32065974 32066102 -69807067 + L1ME4a LINE L1 5989 6121 0 383 231 13 0 chr13 32066172 32066250 -69806919 - MIR SINE MIR -111 151 73 186 358 11 32 chr13 32067005 32067100 -69806069 + MIR SINE MIR 154 246 -16 616 222 8 0 chr13 32067246 32067372 -69805797 - MER94 DNA DNA -2 132 6 252 59 0 0 chr13 32069035 32069069 -69804100 + (A)n Simple_repeat Simple_repeat 1 34 0 1838 158 7 17 chr13 32070446 32070743 -69802426 - AluJb SINE Alu -18 294 1 410 260 38 18 chr13 32070835 32071009 -69802160 + MLT1I LTR MaLR 279 409 0 768 144 25 0 chr13 32071718 32071878 -69801291 - L1MB4 LINE L1 0 6180 6017 2136 120 3 3 chr13 32072037 32072338 -69800831 + AluSx SINE Alu 1 301 -11 1012 140 13 0 chr13 32072724 32072874 -69800295 - L1MB5 LINE L1 -13 6161 6010 1537 125 139 52 chr13 32072988 32073275 -69799894 - AluJo SINE Alu 0 312 1 362 312 29 47 chr13 32073651 32073821 -69799348 + MER5A DNA MER1_type 23 189 0 372 291 57 29 chr13 32074613 32074788 -69798381 + MIR3 SINE MIR 20 199 -9 794 246 73 103 chr13 32075042 32075586 -69797583 + MLT1K LTR MaLR 29 556 -32 911 236 89 4 chr13 32075953 32076503 -69796666 + MER45B DNA AcHobo 1 707 -333 392 309 29 15 chr13 32077293 32077429 -69795740 + MIR SINE MIR 4 141 -121 308 333 45 13 chr13 32077787 32077943 -69795226 - L1 LINE L1 -1227 4919 4759 547 280 10 55 chr13 32077955 32078155 -69795014 + MIR SINE MIR 1 191 -71 219 341 121 0 chr13 32078301 32078392 -69794777 + L2 LINE L2 3197 3298 -15 1179 134 0 6 chr13 32078525 32078689 -69794480 + AluSx SINE Alu 1 163 -149 2147 103 3 23 chr13 32078926 32079236 -69793933 - AluSx SINE Alu -4 308 5 336 343 72 25 chr13 32079588 32079824 -69793345 + MIR SINE MIR 6 252 -10 1432 200 11 0 chr13 32080739 32081019 -69792150 + L1M4 LINE L1 4788 5070 -1076 303 242 0 0 chr13 32081022 32081084 -69792085 + MER5A DNA MER1_type 128 189 0 3808 114 49 0 chr13 32081533 32082061 -69791108 - MER41C LTR ERV1 0 554 1 212 358 166 19 chr13 32082103 32082410 -69790759 - L2 LINE L2 -471 2843 2492 233 235 115 95 chr13 32084315 32084515 -69788654 - L1MC5 LINE L1 -52 7909 7706 2157 89 0 4 chr13 32084565 32084834 -69788335 + AluSq SINE Alu 1 268 -45 1940 115 14 7 chr13 32085067 32085366 -69787803 - AluSg SINE Alu 0 301 1 2360 92 0 16 chr13 32085636 32085953 -69787216 + AluSq SINE Alu 2 313 0 323 282 161 17 chr13 32086480 32086654 -69786515 - MLT1L LTR MaLR -4 611 413 252 263 189 53 chr13 32086655 32086883 -69786286 + L1ME4a LINE L1 5863 6121 0 197 100 50 0 chr13 32086884 32086924 -69786245 + A-rich Low_complexity Low_complexity 2 43 0 289 246 15 0 chr13 32087677 32087742 -69785427 - MIR3 SINE MIR -21 187 122 6441 170 104 47 chr13 32088042 32089031 -69784138 + MER52A LTR ERV1 2 1194 -561 2096 112 6 48 chr13 32089031 32089345 -69783824 + AluSq SINE Alu 1 301 -12 6441 170 104 47 chr13 32089345 32089940 -69783229 + MER52A LTR ERV1 1194 1754 -1 332 314 69 19 chr13 32090306 32090465 -69782704 - MIR SINE MIR -76 186 20 1151 251 93 46 chr13 32091484 32092255 -69780914 + L2 LINE L2 2524 3310 -3 389 200 24 0 chr13 32093231 32093316 -69779853 - MIR SINE MIR -62 200 114 302 271 12 0 chr13 32093400 32093485 -69779684 - MER94 DNA DNA -5 129 44 2143 138 0 0 chr13 32093557 32093861 -69779308 + AluSx SINE Alu 1 304 -8 495 278 54 58 chr13 32094413 32094750 -69778419 - L1MC/D LINE L1 -537 5584 5255 26 0 0 0 chr13 32094846 32094872 -69778297 + AT_rich Low_complexity Low_complexity 1 26 0 1865 177 0 0 chr13 32094873 32095167 -69778002 - 7SLRNA srpRNA srpRNA -21 299 6 318 271 56 42 chr13 32095678 32095822 -69777347 + MIR SINE MIR 117 262 0 2385 97 3 0 chr13 32096671 32096980 -69776189 - AluSx SINE Alu -1 311 2 1310 44 6 0 chr13 32097115 32097273 -69775896 - L1PA4 LINE L1 0 6155 5997 606 242 66 74 chr13 32097545 32097789 -69775380 - MER112 DNA MER1_type -13 247 6 323 237 88 79 chr13 32098148 32098262 -69774907 - MIR3 SINE MIR -52 156 42 281 248 186 18 chr13 32100076 32100189 -69772980 + L2 LINE L2 3182 3313 0 189 298 0 0 chr13 32100197 32100244 -69772925 - L3 LINE CR1 -7 1570 1524 336 298 105 0 chr13 32100380 32100504 -69772665 - L2 LINE L2 -2 3311 3175 702 103 47 9 chr13 32101253 32101360 -69771809 + HY1 scRNA scRNA 1 111 -1 23 0 0 0 chr13 32101360 32101383 -69771786 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr13 32103105 32103152 -69770017 + GC_rich Low_complexity Low_complexity 1 47 0 5903 72 28 3 chr13 32104446 32105193 -69767976 + MER4E LTR ERV1 1 766 0 275 300 55 9 chr13 32105503 32105613 -69767556 + MIR SINE MIR 72 186 -76 187 265 170 70 chr13 32106533 32106733 -69766436 - L2 LINE L2 -350 2964 2745 246 180 100 110 chr13 32106916 32107016 -69766153 - MLT1K LTR MaLR 0 588 490 217 237 34 0 chr13 32107207 32107266 -69765903 + MIR SINE MIR 180 240 -22 756 305 77 0 chr13 32107292 32107538 -69765631 + L2 LINE L2 974 1238 -2076 596 246 134 88 chr13 32107544 32107564 -69765605 + L2 LINE L2 1392 1410 -1904 2419 86 3 0 chr13 32107564 32107867 -69765302 + AluSx SINE Alu 1 304 -8 596 246 134 88 chr13 32107867 32108153 -69765016 + L2 LINE L2 1410 1720 -1594 1760 166 7 10 chr13 32108153 32108455 -69764714 + AluJb SINE Alu 4 304 -8 596 246 134 88 chr13 32108455 32108521 -69764648 + L2 LINE L2 1720 1782 -1532 366 287 82 62 chr13 32108674 32108918 -69764251 - MIR SINE MIR -8 254 6 308 240 199 14 chr13 32109120 32109260 -69763909 - MIR SINE MIR -78 130 3 1187 128 51 36 chr13 32109372 32109568 -69763601 + MER3 DNA MER1_type 7 205 -4 709 253 68 14 chr13 32109996 32110217 -69762952 + Charlie8 DNA MER1_type 43 275 -2142 298 217 0 0 chr13 32110249 32110309 -69762860 + Charlie8 DNA MER1_type 1368 1427 -990 307 324 9 0 chr13 32110335 32110440 -69762729 - MIR SINE MIR -56 206 101 1605 135 107 38 chr13 32111527 32111816 -69761353 - AluJo SINE Alu -3 309 1 200 216 198 9 chr13 32112507 32112618 -69760551 - L2 LINE L2 -3 3310 3179 802 112 0 0 chr13 32113542 32113649 -69759520 + AluSg/x SINE Alu 196 302 -10 325 167 90 51 chr13 32114116 32114194 -69758975 - MIR SINE MIR -21 241 161 852 283 35 17 chr13 32114195 32114425 -69758744 + MLT1I LTR MaLR 22 255 -154 458 209 33 0 chr13 32114454 32114545 -69758624 + MLT1I LTR MaLR 316 409 0 1517 217 25 0 chr13 32114747 32115024 -69758145 - AluJb SINE Alu -28 284 1 377 258 144 54 chr13 32115272 32115824 -69757345 - L1MC/D LINE L1 -775 5371 5211 1098 253 30 68 chr13 32116223 32116650 -69756519 + MLT1J LTR MaLR 101 511 0 2337 79 0 3 chr13 32116774 32117064 -69756105 - AluSg SINE Alu -5 305 17 1266 144 0 0 chr13 32117759 32117933 -69755236 - FAM SINE Alu -1 174 1 197 319 64 99 chr13 32118736 32118877 -69754292 + MIR3 SINE MIR 6 141 -67 * 200 178 22 44 chr13 32118845 32118890 -69754279 + MIR SINE MIR 111 154 -108 575 278 150 22 chr13 32118919 32119192 -69753977 - MLT1L LTR MaLR -62 553 246 747 183 41 24 chr13 32119566 32119735 -69753434 + MER20 DNA MER1_type 2 173 -46 2216 116 0 3 chr13 32119764 32120056 -69753113 - AluSx SINE Alu -21 291 1 2579 163 102 4 chr13 32120237 32120697 -69752472 - MLT1D LTR MaLR 0 505 1 378 149 40 14 chr13 32120837 32120911 -69752258 - HsTC2 DNA Tc2 0 1898 1823 319 215 47 47 chr13 32120945 32121052 -69752117 + MLT1H LTR MaLR 3 109 -440 320 197 0 0 chr13 32121261 32121322 -69751847 - HsTC2 DNA Tc2 -1836 62 2 28 0 0 0 chr13 32121686 32121714 -69751455 + AT_rich Low_complexity Low_complexity 1 28 0 204 135 96 39 chr13 32122271 32122323 -69750846 - MIR SINE MIR -44 218 164 299 391 105 0 chr13 32122636 32122769 -69750400 + L2 LINE L2 3126 3272 0 2466 73 0 0 chr13 32123876 32124176 -69748993 - AluSq SINE Alu -13 300 1 1037 254 145 70 chr13 32125070 32125567 -69747602 + L2 LINE L2 2244 2777 -537 768 299 38 44 chr13 32125628 32125735 -69747434 + L2 LINE L2 2949 3055 -258 2006 136 17 13 chr13 32125735 32126037 -69747132 + AluSx SINE Alu 1 303 -9 768 299 38 44 chr13 32126037 32126294 -69746875 + L2 LINE L2 3055 3311 -2 1114 188 46 96 chr13 32126984 32127226 -69745943 - Charlie2a DNA MER1_type -364 2498 2245 1952 125 50 16 chr13 32127226 32127529 -69745640 - AluSq SINE Alu 0 313 1 1114 188 46 96 chr13 32127529 32127754 -69745415 - Charlie2a DNA MER1_type -617 2245 2057 2156 132 6 0 chr13 32127754 32128065 -69745104 - AluSq SINE Alu 0 313 1 1114 188 46 96 chr13 32128065 32128117 -69745052 - Charlie2a DNA MER1_type -805 2057 2004 2874 152 19 10 chr13 32128117 32128677 -69744492 + L1M4 LINE L1 5215 5779 -399 2136 126 10 3 chr13 32128677 32128987 -69744182 + AluSq SINE Alu 1 312 -1 2874 152 19 10 chr13 32128987 32129028 -69744141 + L1M4 LINE L1 5779 5818 -360 1672 202 20 7 chr13 32129031 32129323 -69743846 - AluJo SINE Alu -15 297 2 869 208 167 10 chr13 32129326 32129716 -69743453 - Charlie2a DNA MER1_type -1197 1665 1215 14698 32 4 3 chr13 32129723 32131241 -69741928 - L1PA4 LINE L1 -2 6153 4629 2300 87 0 31 chr13 32131241 32131562 -69741607 - AluY SINE Alu 0 311 1 14698 32 4 3 chr13 32131562 32132597 -69740572 - L1PA4 LINE L1 -1526 4629 3597 34238 55 5 0 chr13 32132744 32137271 -69735898 - L1P LINE L1 -1588 4558 11 450 228 86 0 chr13 32137277 32137439 -69735730 - Charlie2a DNA MER1_type -1638 1224 1049 754 91 0 0 chr13 32137514 32137613 -69735556 + AluSp/q SINE Alu 199 297 -16 1677 232 133 45 chr13 32137616 32138484 -69734685 - Charlie2a DNA MER1_type -1825 1037 94 2151 100 3 13 chr13 32138484 32138785 -69734384 + AluSx SINE Alu 5 302 -10 388 123 62 0 chr13 32138830 32138895 -69734274 - U6 snRNA snRNA -38 69 1 332 296 50 19 chr13 32139525 32139684 -69733485 + MIR SINE MIR 70 233 -29 504 237 46 46 chr13 32140184 32140336 -69732833 - MER5B DNA MER1_type -2 176 25 1680 125 117 23 chr13 32140740 32141083 -69732086 - L1MC1 LINE L1 -1 6332 5958 840 171 0 20 chr13 32141091 32141237 -69731932 - FLAM_C SINE Alu 0 143 1 2818 111 7 7 chr13 32141244 32141687 -69731482 - L1MC1 LINE L1 -366 5967 5525 262 286 0 0 chr13 32142119 32142189 -69730980 - L2 LINE L2 0 3272 3203 289 322 125 29 chr13 32143767 32143975 -69729194 + L2 LINE L2 2633 2860 -454 2125 104 23 16 chr13 32144533 32144840 -69728329 - AluSc SINE Alu 0 309 1 292 328 65 97 chr13 32144858 32145166 -69728003 + L2 LINE L2 2938 3235 -37 269 387 65 0 chr13 32146133 32146319 -69726850 - L2 LINE L2 -552 2762 2565 405 274 14 55 chr13 32146362 32146508 -69726661 + MIR SINE MIR 19 158 -104 290 230 124 26 chr13 32146837 32146950 -69726219 + LTR67 LTR ERVL 434 557 0 257 279 0 0 chr13 32146950 32147018 -69726151 + MIR SINE MIR 161 228 -34 371 332 77 63 chr13 32147328 32147756 -69725413 + L2 LINE L2 2804 3237 -35 570 252 56 26 chr13 32148522 32148756 -69724413 - L1MC4a LINE L1 -1869 5939 5699 446 349 132 24 chr13 32148928 32149269 -69723900 + L2 LINE L2 2895 3272 0 184 125 0 0 chr13 32150135 32150167 -69723002 + L2 LINE L2 3282 3313 0 335 252 5 24 chr13 32150173 32150273 -69722896 + MIR SINE MIR 66 167 -41 2137 149 0 0 chr13 32150321 32150629 -69722540 + AluSx SINE Alu 1 308 -4 24 32 0 0 chr13 32151020 32151051 -69722118 + AT_rich Low_complexity Low_complexity 1 31 0 400 291 0 18 chr13 32151236 32151346 -69721823 - MIR SINE MIR -81 127 20 552 190 29 29 chr13 32151815 32151952 -69721217 - LTR45 LTR ERV1 0 525 389 829 271 132 17 chr13 32152494 32152973 -69720196 + L1MC4a LINE L1 5616 6149 -1659 971 271 98 26 chr13 32152996 32153373 -69719796 - L2 LINE L2 -610 2704 2301 792 243 130 34 chr13 32153798 32154090 -69719079 + MLT1A1 LTR MaLR 1 320 -45 1289 235 62 17 chr13 32154433 32154613 -69718556 - MLT1A2 LTR MaLR -5 369 199 195 42 0 0 chr13 32154613 32154637 -69718532 + (GA)n Simple_repeat Simple_repeat 2 25 0 1289 235 62 17 chr13 32154637 32154809 -69718360 - MLT1A2 LTR MaLR -175 199 1 347 281 79 40 chr13 32154818 32155196 -69717973 + LTR16A LTR ERVL 24 491 0 610 155 0 0 chr13 32155905 32156002 -69717167 - AluJb SINE Alu -7 305 209 33 85 0 0 chr13 32156049 32156131 -69717038 + AT_rich Low_complexity Low_complexity 1 82 0 1751 164 6 32 chr13 32156486 32156798 -69716371 - AluJb SINE Alu -8 304 1 2019 126 0 4 chr13 32157059 32157336 -69715833 + AluSg SINE Alu 1 276 -34 6757 63 17 6 chr13 32157367 32158979 -69714190 + L1PA7 LINE L1 4533 6154 0 625 118 0 0 chr13 32158995 32159088 -69714081 + AluJb SINE Alu 211 303 -9 901 290 60 35 chr13 32159088 32159620 -69713549 - L1ME LINE L1 -314 5807 5265 30 0 0 0 chr13 32159848 32159878 -69713291 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 32160148 32160175 -69712994 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr13 32160232 32160254 -69712915 + AT_rich Low_complexity Low_complexity 1 22 0 237 286 54 0 chr13 32160294 32160406 -69712763 - L1ME LINE L1 -1539 4607 4490 1261 206 127 0 chr13 32160470 32160737 -69712432 - AluJo SINE Alu -1 301 1 216 0 0 0 chr13 32161060 32161084 -69712085 + (CA)n Simple_repeat Simple_repeat 2 25 0 636 327 48 16 chr13 32162220 32162468 -69710701 + MIR SINE MIR 5 260 -2 1186 244 102 36 chr13 32162811 32163446 -69709723 + L2 LINE L2 2636 3313 0 1770 119 8 23 chr13 32163560 32163820 -69709349 + AluSq SINE Alu 43 298 -15 2109 113 30 7 chr13 32164603 32164905 -69708264 - AluSg1 SINE Alu 0 309 1 403 299 44 101 chr13 32166034 32166321 -69706848 - L2 LINE L2 -2 3270 3015 2282 113 7 0 chr13 32166321 32166631 -69706538 + AluSx SINE Alu 1 312 0 403 299 44 101 chr13 32166631 32166728 -69706441 - L2 LINE L2 -257 3015 2914 870 141 0 15 chr13 32167458 32167593 -69705576 - FLAM_C SINE Alu 0 133 1 230 241 172 0 chr13 32167687 32167774 -69705395 - MIR3 SINE MIR -10 198 97 800 253 89 32 chr13 32167838 32168209 -69704960 - LTR16A LTR ERVL -7 443 52 21 0 0 0 chr13 32168410 32168431 -69704738 + AT_rich Low_complexity Low_complexity 1 21 0 1997 103 3 52 chr13 32168464 32168774 -69704395 - AluSx SINE Alu -17 295 1 1940 160 0 0 chr13 32170514 32170801 -69702368 + AluJb SINE Alu 1 287 -25 17531 59 5 1 chr13 32171788 32175269 -69697900 - L1PA6 LINE L1 -1 6153 2660 304 135 0 19 chr13 32175662 32175714 -69697455 + L2 LINE L2 3258 3308 -5 1043 168 245 7 chr13 32176282 32176592 -69696577 - L1MB8 LINE L1 0 6178 5795 975 215 27 9 chr13 32177360 32177579 -69695590 + MER58A DNA MER1_type 1 223 -1 276 155 62 70 chr13 32177646 32177775 -69695394 + Charlie7 DNA MER1_type 2444 2571 -41 24 0 0 0 chr13 32178218 32178242 -69694927 + AT_rich Low_complexity Low_complexity 1 24 0 368 311 88 7 chr13 32179959 32180107 -69693062 + L2 LINE L2 2597 2756 -558 210 71 0 0 chr13 32180711 32180739 -69692430 + (TG)n Simple_repeat Simple_repeat 2 29 0 284 284 134 8 chr13 32181007 32181134 -69692035 - L3b LINE CR1 -85 1498 1356 548 305 17 28 chr13 32181266 32181443 -69691726 + MER5B DNA MER1_type 4 178 0 195 42 0 0 chr13 32182457 32182481 -69690688 + (A)n Simple_repeat Simple_repeat 1 24 0 303 162 0 95 chr13 32182673 32182747 -69690422 - MIR SINE MIR -82 180 114 339 244 12 0 chr13 32182750 32182836 -69690333 + MER46C DNA MER2_type 251 337 -1 274 263 121 0 chr13 32182836 32182935 -69690234 + MIR SINE MIR 152 262 0 229 370 161 0 chr13 32183438 32183630 -69689539 - L2 LINE L2 -927 2387 2165 718 11 0 21 chr13 32184213 32184306 -69688863 + (TTCC)n Simple_repeat Simple_repeat 2 92 0 1872 107 61 0 chr13 32184307 32184569 -69688600 - AluSx SINE Alu -34 278 1 261 0 0 0 chr13 32185161 32185190 -69687979 + (A)n Simple_repeat Simple_repeat 1 29 0 873 228 50 15 chr13 32185809 32186011 -69687158 + MER63A DNA MER1_type 2 210 0 231 239 14 14 chr13 32186076 32186147 -69687022 + LTR33 LTR ERVL 382 452 -69 1486 177 90 153 chr13 32186238 32186815 -69686354 + MLT1F LTR MaLR 2 542 0 375 264 78 82 chr13 32187132 32187363 -69685806 + L2 LINE L2 2844 3073 -199 398 201 173 36 chr13 32187505 32187644 -69685525 + L2 LINE L2 3155 3312 -1 630 279 119 10 chr13 32187649 32187850 -69685319 + MIR SINE MIR 28 250 -12 550 255 106 16 chr13 32190127 32190315 -69682854 + L3 LINE CR1 1371 1575 -2 342 311 42 17 chr13 32190375 32190494 -69682675 + MER5B DNA MER1_type 55 176 -2 31 58 0 0 chr13 32191273 32191325 -69681844 + AT_rich Low_complexity Low_complexity 1 52 0 1165 206 125 22 chr13 32191382 32191742 -69681427 - MLT2C1 LTR ERVL 0 397 1 353 256 240 0 chr13 32191883 32192004 -69681165 + MIR3 SINE MIR 48 197 -11 408 266 196 5 chr13 32192236 32192450 -69680719 - MLT1K LTR MaLR -10 578 324 2816 170 33 2 chr13 32192930 32193441 -69679728 + MER44D DNA MER2_type 1 582 -23 689 95 0 0 chr13 32193445 32193550 -69679619 + L1PA10 LINE L1 5464 5568 -606 2427 78 6 6 chr13 32193550 32193879 -69679290 + L1PA10 LINE L1 5834 6168 0 1589 194 8 26 chr13 32193896 32194247 -69678922 - L1M3 LINE L1 -399 5784 5440 266 338 0 0 chr13 32194576 32194644 -69678525 - MIR SINE MIR -84 124 57 502 168 11 0 chr13 32194701 32194796 -69678373 + MLT1A1 LTR MaLR 3 98 -298 399 228 43 0 chr13 32194794 32194886 -69678283 + MLT1J LTR MaLR 311 406 -105 * 649 203 71 78 chr13 32194911 32195192 -69677977 + MLT1A1 LTR MaLR 87 365 0 2378 70 0 0 chr13 32195512 32195821 -69677348 - AluY SINE Alu 0 309 1 2080 118 4 0 chr13 32196124 32196404 -69676765 + AluSc SINE Alu 14 294 -15 2568 7 0 0 chr13 32196542 32196825 -69676344 - AluYb8 SINE Alu -35 283 1 324 22 22 0 chr13 32197461 32197507 -69675662 + MADE1 DNA Mariner 34 80 0 268 174 101 0 chr13 32197863 32197932 -69675237 + LTR33 LTR ERVL 2 77 -444 444 220 139 17 chr13 32198119 32198292 -69674877 + LTR33 LTR ERVL 328 521 0 15552 101 17 17 chr13 32199026 32201494 -69671675 - L1P LINE L1 -3237 2909 442 2405 184 16 11 chr13 32201992 32202444 -69670725 + MLT2B2 LTR ERVL 1 454 -61 2042 159 72 0 chr13 32202444 32202803 -69670366 + MSTB LTR MaLR 1 385 -41 677 156 65 65 chr13 32202905 32203088 -69670081 + AluSg/x SINE Alu 132 314 0 629 220 8 0 chr13 32203464 32203582 -69669587 - FLAM_A SINE Alu -14 119 1 253 312 75 0 chr13 32203867 32203960 -69669209 - MIR3 SINE MIR -11 197 98 22 35 0 0 chr13 32204039 32204068 -69669101 + AT_rich Low_complexity Low_complexity 1 29 0 1791 138 90 16 chr13 32204288 32204600 -69668569 - MER1B DNA MER1_type 0 337 3 183 270 0 0 chr13 32204612 32204649 -69668520 - L2 LINE L2 -216 3056 3020 2155 88 37 30 chr13 32204722 32205018 -69668151 + AluSq SINE Alu 1 298 -15 1990 140 0 0 chr13 32205050 32205335 -69667834 + AluSx SINE Alu 12 296 -16 278 295 84 0 chr13 32205705 32205800 -69667369 + MIR SINE MIR 85 187 -75 546 278 91 37 chr13 32205934 32206175 -69666994 + MIR SINE MIR 8 261 -1 3347 133 93 10 chr13 32206270 32206896 -69666273 - Tigger3(Golem) DNA MER2_type 0 3028 2338 1956 82 26 65 chr13 32206896 32207202 -69665967 - AluY SINE Alu -17 294 1 3347 133 93 10 chr13 32207202 32207266 -69665903 - Tigger3(Golem) DNA MER2_type -690 2338 2281 486 221 25 25 chr13 32207249 32207371 -69665798 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 250 302 101 36 chr13 32208491 32208630 -69664539 - MIR SINE MIR -71 191 44 996 182 6 0 chr13 32209017 32209187 -69663982 - FRAM SINE Alu -6 170 1 1891 177 3 0 chr13 32210022 32210316 -69662853 + 7SLRNA srpRNA srpRNA 3 297 -23 218 186 51 51 chr13 32210318 32210377 -69662792 - MIR SINE MIR -61 147 89 287 314 59 25 chr13 32210753 32210989 -69662180 - L1ME LINE L1 -302 5819 5576 1239 165 4 22 chr13 32211462 32211692 -69661477 - AluJb SINE Alu -1 311 86 2236 59 0 3 chr13 32211903 32212193 -69660976 + L1P2 LINE L1 5495 5783 -371 20349 67 2 0 chr13 32212203 32214923 -69658246 + L1P LINE L1 9 2734 -3412 21426 53 13 5 chr13 32215023 32217938 -69655231 - L1P LINE L1 -2954 3192 253 2248 119 7 0 chr13 32218088 32218391 -69654778 - AluSx SINE Alu -7 305 1 355 339 58 17 chr13 32218710 32218884 -69654285 + MIR SINE MIR 34 214 -48 2423 85 3 7 chr13 32219251 32219558 -69653611 + AluSg SINE Alu 1 306 -4 22 0 0 0 chr13 32219634 32219656 -69653513 + AT_rich Low_complexity Low_complexity 1 22 0 339 358 58 0 chr13 32220846 32220966 -69652203 - MIR3 SINE MIR -32 176 50 219 340 52 21 chr13 32221160 32221257 -69651912 - L2 LINE L2 -32 3240 3141 448 270 44 44 chr13 32222789 32222948 -69650221 + L2 LINE L2 3107 3265 -48 228 326 52 56 chr13 32223061 32223328 -69649841 - L2 LINE L2 -180 3092 2827 30 27 0 0 chr13 32223584 32223621 -69649548 + AT_rich Low_complexity Low_complexity 1 37 0 41 0 0 36 chr13 32223807 32223845 -69649324 + AT_rich Low_complexity Low_complexity 1 38 -16 341 67 0 33 chr13 32223845 32223905 -69649264 - L1PB1 LINE L1 -3 6148 6091 41 0 0 36 chr13 32223905 32223922 -69649247 + AT_rich Low_complexity Low_complexity 38 54 0 15251 34 8 1 chr13 32223922 32226656 -69646513 - L1PA5 LINE L1 -23 6131 3381 737 130 23 148 chr13 32226922 32227138 -69646031 + MER53 DNA DNA 1 189 0 285 270 9 81 chr13 32227141 32227252 -69645917 + L2 LINE L2 3168 3270 -2 1655 164 76 48 chr13 32227471 32227514 -69645655 - MLT1A1 LTR MaLR -1 364 324 2036 117 0 7 chr13 32227514 32227796 -69645373 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr13 32227797 32227821 -69645348 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1655 164 76 48 chr13 32227821 32228129 -69645040 - MLT1A1 LTR MaLR -40 325 1 648 283 108 21 chr13 32228177 32228463 -69644706 + L2 LINE L2 3001 3311 -2 265 339 61 48 chr13 32228592 32228726 -69644443 + L2 LINE L2 2488 2628 -686 1840 159 20 3 chr13 32228726 32229021 -69644148 + AluSx SINE Alu 3 302 -10 265 339 61 48 chr13 32229021 32229116 -69644053 + L2 LINE L2 2628 2720 -594 643 89 0 122 chr13 32229120 32229191 -69643978 - MSTB LTR MaLR 0 432 381 2336 104 3 0 chr13 32229191 32229500 -69643669 + AluSx SINE Alu 1 310 -2 643 89 0 122 chr13 32229500 32229551 -69643618 - MSTB LTR MaLR -51 381 325 1229 216 43 7 chr13 32230470 32230748 -69642421 - MSTB LTR MaLR -138 288 1 1515 231 61 17 chr13 32231049 32231456 -69641713 + HsTC2a DNA Tc2 4 428 -316 267 206 52 41 chr13 32231463 32231560 -69641609 + HsTC2a DNA Tc2 645 742 0 296 268 10 62 chr13 32231647 32231744 -69641425 + L2 LINE L2 3179 3270 -2 408 350 6 28 chr13 32233051 32233231 -69639938 + MER5B DNA MER1_type 3 178 0 7076 166 59 103 chr13 32233608 32235444 -69637725 + MER52A LTR ERV1 1 1755 0 40 21 0 0 chr13 32237334 32237381 -69635788 + GC_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr13 32237620 32237663 -69635506 + GC_rich Low_complexity Low_complexity 1 43 0 442 275 144 53 chr13 32238590 32238874 -69634295 - L1M2 LINE L1 -5768 1081 772 188 132 0 26 chr13 32239029 32239067 -69634102 + (TTCCC)n Simple_repeat Simple_repeat 2 38 0 267 31 0 0 chr13 32239241 32239273 -69633896 + (CGG)n Simple_repeat Simple_repeat 1 32 0 2194 97 3 0 chr13 32242925 32243215 -69629954 - AluSp SINE Alu -22 291 1 216 0 0 0 chr13 32243234 32243258 -69629911 + (T)n Simple_repeat Simple_repeat 1 24 0 4473 172 57 4 chr13 32243939 32245177 -69627992 - L1MB2 LINE L1 0 6171 4874 321 347 13 38 chr13 32245284 32245477 -69627692 + MIR SINE MIR 23 209 -53 22 35 0 0 chr13 32245565 32245594 -69627575 + AT_rich Low_complexity Low_complexity 1 29 0 20697 84 19 3 chr13 32246058 32249708 -69623461 + L1PA7 LINE L1 2480 6143 -11 1864 136 46 60 chr13 32250011 32250379 -69622790 - MLT2D LTR ERVL -48 366 4 361 274 85 90 chr13 32250670 32250782 -69622387 - MIR SINE MIR -17 245 133 1735 173 0 13 chr13 32250782 32251088 -69622081 + AluJo SINE Alu 1 302 -10 361 274 85 90 chr13 32251088 32251176 -69621993 - MIR SINE MIR -129 133 46 979 239 159 64 chr13 32251409 32251904 -69621265 - L2 LINE L2 -4 3309 2650 604 104 9 264 chr13 32251904 32252124 -69621045 + FRAM SINE Alu 3 166 0 979 239 159 64 chr13 32252124 32252320 -69620849 - L2 LINE L2 -663 2650 2474 671 228 123 33 chr13 32253351 32253562 -69619607 - MIR SINE MIR -5 257 28 290 261 26 83 chr13 32253657 32253860 -69619309 - MER20B DNA MER1_type -16 203 4 264 30 0 0 chr13 32253914 32253947 -69619222 + (TG)n Simple_repeat Simple_repeat 2 34 0 181 250 47 47 chr13 32255664 32255728 -69617441 - L2 LINE L2 0 3313 3250 1557 88 77 25 chr13 32256195 32256480 -69616689 + L1MA5A LINE L1 5998 6297 0 1677 218 84 89 chr13 32256921 32257506 -69615663 - L1ME LINE L1 -386 5780 5191 2438 71 10 0 chr13 32257506 32257802 -69615367 + AluY SINE Alu 1 299 -12 1677 218 84 89 chr13 32257802 32258376 -69614793 - L1ME LINE L1 -975 5191 4616 536 205 83 79 chr13 32258386 32258615 -69614554 - L1ME LINE L1 -1619 4527 4298 573 256 0 16 chr13 32258617 32258742 -69614427 - FLAM_A SINE Alu -14 128 6 807 228 133 78 chr13 32258768 32259278 -69613891 - L1ME LINE L1 -1869 4277 3740 1149 236 8 61 chr13 32259290 32259651 -69613518 - MLT2B1 LTR ERVL -178 342 1 261 316 43 17 chr13 32259668 32259785 -69613384 - MIR3 SINE MIR -6 202 83 22 70 0 0 chr13 32259794 32259837 -69613332 + AT_rich Low_complexity Low_complexity 1 43 0 259 222 14 14 chr13 32259885 32259957 -69613212 + L1MB7 LINE L1 6104 6175 -9 2875 260 58 39 chr13 32260071 32260713 -69612456 + L2 LINE L2 2109 2775 -538 2258 84 10 17 chr13 32260713 32261010 -69612159 + AluSq SINE Alu 3 297 -16 2875 260 58 39 chr13 32261010 32261384 -69611785 + L2 LINE L2 2775 3140 -173 400 236 56 83 chr13 32261772 32261916 -69611253 + MER5B DNA MER1_type 36 175 -3 300 246 14 0 chr13 32262649 32262718 -69610451 - MIR SINE MIR -76 132 63 1309 201 32 29 chr13 32263319 32263667 -69609502 + MLT1A2 LTR MaLR 1 349 -25 914 269 170 17 chr13 32263930 32264342 -69608827 - L2 LINE L2 0 3313 2839 1789 179 60 54 chr13 32264489 32264952 -69608217 - MLT1C LTR MaLR 0 467 2 247 203 0 40 chr13 32266162 32266236 -69606933 - L1MB8 LINE L1 -1 6177 6107 2201 112 3 3 chr13 32266237 32266532 -69606637 - AluSc SINE Alu -14 295 1 207 0 0 0 chr13 32266537 32266560 -69606609 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1143 99 0 13 chr13 32266568 32266719 -69606450 - AluSx SINE Alu -37 275 127 355 189 0 27 chr13 32266742 32266816 -69606353 - AluSx SINE Alu -170 133 62 764 62 0 0 chr13 32266818 32266914 -69606255 - AluS SINE Alu -217 96 1 342 191 53 38 chr13 32266931 32267062 -69606107 - L1MB8 LINE L1 -72 6106 5974 583 152 0 0 chr13 32267930 32268022 -69605147 - Tigger7 DNA MER2_type 0 2587 2496 * 2496 175 39 16 chr13 32268021 32268530 -69604639 - Tigger7 DNA MER2_type -212 521 1 262 157 78 0 chr13 32268867 32268918 -69604251 - MLT2B1 LTR ERVL 0 520 466 1546 147 99 6 chr13 32268924 32269237 -69603932 - MER7A DNA MER2_type -6 340 1 22 56 0 0 chr13 32269496 32269532 -69603637 + AT_rich Low_complexity Low_complexity 1 36 0 1934 138 0 14 chr13 32271186 32271483 -69601686 - AluSx SINE Alu -19 293 1 442 97 75 43 chr13 32272182 32272275 -69600894 - L1MB2 LINE L1 0 6171 6076 26 30 0 0 chr13 32272288 32272321 -69600848 + AT_rich Low_complexity Low_complexity 1 33 0 380 325 38 25 chr13 32272488 32272645 -69600524 - L2 LINE L2 -208 3064 2906 21 36 0 0 chr13 32272653 32272681 -69600488 + AT_rich Low_complexity Low_complexity 1 28 0 531 214 10 0 chr13 32273869 32273967 -69599202 - AluJ/FLAM SINE Alu -213 99 1 562 267 87 101 chr13 32275875 32276126 -69597043 - MLT1J LTR MaLR -70 441 197 2039 111 18 4 chr13 32276126 32276406 -69596763 + AluSq SINE Alu 13 296 -17 562 267 87 101 chr13 32276406 32276600 -69596569 - MLT1J LTR MaLR -314 197 2 3522 139 69 0 chr13 32277004 32277614 -69595555 + Tigger3b DNA MER2_type 10 661 -570 1853 145 16 26 chr13 32277615 32277926 -69595243 - AluJb SINE Alu -3 309 2 353 45 0 0 chr13 32277926 32277970 -69595199 + (TG)n Simple_repeat Simple_repeat 1 44 0 4292 162 58 10 chr13 32278085 32279222 -69593947 + L1MB7 LINE L1 4901 6092 -92 22 0 0 0 chr13 32279787 32279809 -69593360 + AT_rich Low_complexity Low_complexity 1 22 0 2352 119 5 30 chr13 32279812 32280183 -69592986 - THE1B LTR MaLR -2 362 1 384 255 40 0 chr13 32280206 32280346 -69592823 + L1MC4 LINE L1 7900 7995 0 333 0 0 0 chr13 32280661 32280698 -69592471 + (TG)n Simple_repeat Simple_repeat 2 38 0 399 293 122 32 chr13 32281376 32281622 -69591547 - MLT1J LTR MaLR -232 279 12 631 251 104 24 chr13 32281644 32281855 -69591314 - L1MC5 LINE L1 -1122 6839 6612 437 249 126 1 chr13 32281941 32282084 -69591085 + MIR SINE MIR 39 196 -62 181 318 45 68 chr13 32282332 32282508 -69590661 + L2 LINE L2 3117 3288 -25 3346 220 92 29 chr13 32283220 32283953 -69589216 - L1ME1 LINE L1 -5 6161 5476 2231 111 3 0 chr13 32283953 32284260 -69588909 - AluSx SINE Alu -4 308 1 3346 220 92 29 chr13 32284260 32284275 -69588894 - L1ME1 LINE L1 -690 5476 5463 2113 105 0 3 chr13 32284275 32284602 -69588567 - AluSx SINE Alu 0 326 1 3346 220 92 29 chr13 32284602 32285804 -69587365 - L1ME1 LINE L1 -703 5463 4078 278 377 14 7 chr13 32285939 32286085 -69587084 + HsTC2 DNA Tc2 491 637 -1261 561 93 0 0 chr13 32286213 32286343 -69586826 - AluSg/x SINE Alu 0 338 209 387 223 68 10 chr13 32286357 32286460 -69586709 + HsTC2 DNA Tc2 782 890 -1008 231 228 76 43 chr13 32286681 32286773 -69586396 + MIR SINE MIR 167 261 -1 2286 91 0 3 chr13 32287089 32287385 -69585784 + AluSq SINE Alu 3 297 -16 1883 119 72 0 chr13 32287584 32287862 -69585307 - AluSx SINE Alu -14 298 1 560 299 136 71 chr13 32288422 32288597 -69584572 - L2 LINE L2 -237 3035 2873 1770 78 0 4 chr13 32288597 32288828 -69584341 + MER30 DNA MER1_type 1 230 0 560 299 136 71 chr13 32288828 32289681 -69583488 - L2 LINE L2 -399 2873 1911 426 177 51 0 chr13 32289691 32289770 -69583399 - MLT1H1 LTR MaLR -10 545 463 248 313 28 27 chr13 32289797 32289994 -69583175 - MLT1H LTR MaLR -185 370 185 195 200 0 0 chr13 32290540 32290575 -69582594 + L2 LINE L2 3019 3053 -260 1633 162 29 16 chr13 32291309 32291492 -69581677 - AluJo SINE Alu 0 312 133 189 0 0 0 chr13 32291492 32291513 -69581656 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 369 0 0 0 chr13 32291512 32291553 -69581616 + (TG)n Simple_repeat Simple_repeat 2 42 0 1633 162 29 16 chr13 32291513 32291677 -69581492 - AluJo SINE Alu -179 133 1 2226 110 3 0 chr13 32292005 32292315 -69580854 - AluY SINE Alu 0 311 1 494 246 98 0 chr13 32293333 32293455 -69579714 + MIR SINE MIR 129 262 0 26 64 0 0 chr13 32293638 32293685 -69579484 + AT_rich Low_complexity Low_complexity 1 47 0 726 213 84 36 chr13 32293781 32294030 -69579139 + MIR SINE MIR 2 262 0 196 381 48 0 chr13 32294272 32294377 -69578792 + L2 LINE L2 3159 3268 -4 515 286 174 19 chr13 32294988 32295362 -69577807 + L1ME3A LINE L1 4820 5251 -895 2014 104 16 39 chr13 32295362 32295671 -69577498 - MER1B DNA MER1_type 0 339 38 1475 228 89 14 chr13 32295695 32295875 -69577294 + L1ME3A LINE L1 5259 5424 -746 276 77 0 0 chr13 32295875 32295914 -69577255 + (CA)n Simple_repeat Simple_repeat 2 40 0 1475 228 89 14 chr13 32295914 32296172 -69576997 + L1ME3A LINE L1 5424 5730 -440 1157 188 38 0 chr13 32296191 32296404 -69576765 + AluJo SINE Alu 74 294 -18 440 238 131 6 chr13 32296406 32296566 -69576603 + L1ME3A LINE L1 5774 5953 -217 334 333 0 0 chr13 32296584 32296701 -69576468 + L1ME3A LINE L1 6036 6152 -18 780 287 92 20 chr13 32296709 32297252 -69575917 - L1ME3A LINE L1 -297 5873 5292 228 67 0 0 chr13 32297771 32297801 -69575368 + (TG)n Simple_repeat Simple_repeat 1 30 0 652 227 30 78 chr13 32298765 32299034 -69574135 - L1MC5 LINE L1 -438 7523 7268 1866 118 4 0 chr13 32299522 32299776 -69573393 + AluSx SINE Alu 3 257 -55 216 0 0 0 chr13 32299778 32299802 -69573367 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 290 297 63 27 chr13 32300890 32301001 -69572168 - L2 LINE L2 -9 3304 3190 277 305 139 60 chr13 32301778 32302080 -69571089 - L3b LINE CR1 -13 1570 1245 282 249 42 90 chr13 32302086 32302239 -69570930 - L1ME4a LINE L1 0 6121 5977 2382 89 0 0 chr13 32302239 32302542 -69570627 + AluSx SINE Alu 1 303 -9 282 249 42 90 chr13 32302542 32302577 -69570592 - L1ME4a LINE L1 -144 5977 5942 608 289 156 68 chr13 32302720 32303222 -69569947 - L2 LINE L2 -14 3299 2751 672 314 193 19 chr13 32303225 32303760 -69569409 - L2 LINE L2 -389 2925 2298 22 35 0 0 chr13 32303760 32303789 -69569380 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 32304162 32304190 -69568979 + AT_rich Low_complexity Low_complexity 1 28 0 734 255 112 5 chr13 32304618 32304814 -69568355 + MIR SINE MIR 43 259 -3 1166 191 59 7 chr13 32305134 32305438 -69567731 - MER33 DNA MER1_type 0 324 5 21 57 0 0 chr13 32305840 32305875 -69567294 + AT_rich Low_complexity Low_complexity 1 35 0 219 69 0 0 chr13 32306135 32306164 -69567005 + (TTC)n Simple_repeat Simple_repeat 2 30 0 2295 101 3 0 chr13 32306925 32307233 -69565936 + AluSp SINE Alu 2 310 -3 23 0 0 0 chr13 32307460 32307483 -69565686 + AT_rich Low_complexity Low_complexity 1 23 0 231 380 83 9 chr13 32307657 32307765 -69565404 - L2 LINE L2 -18 3295 3180 26 64 0 0 chr13 32307976 32308023 -69565146 + AT_rich Low_complexity Low_complexity 1 47 0 403 277 121 0 chr13 32309959 32310100 -69563069 + MIR SINE MIR 49 206 -56 221 363 140 38 chr13 32310498 32310790 -69562379 - L2 LINE L2 -430 2884 2563 207 326 86 29 chr13 32310974 32311149 -69562020 - L2 LINE L2 -929 2385 2201 2087 112 0 14 chr13 32312536 32312822 -69560347 - AluSx SINE Alu -30 282 1 25 0 0 0 chr13 32312833 32312858 -69560311 + AT_rich Low_complexity Low_complexity 1 25 0 2405 56 7 13 chr13 32313616 32313922 -69559247 + AluSq SINE Alu 1 304 -9 697 251 104 22 chr13 32314093 32314324 -69558845 - MIR SINE MIR -10 252 3 1770 151 74 19 chr13 32314353 32314677 -69558492 + MER2 DNA MER2_type 2 343 -1 184 237 0 0 chr13 32315116 32315154 -69558015 - MIR SINE MIR -57 205 168 184 368 66 0 chr13 32315158 32315234 -69557935 - MIR SINE MIR -162 100 20 699 175 12 81 chr13 32315500 32315660 -69557509 - MIR SINE MIR -50 212 64 24 0 0 0 chr13 32316902 32316926 -69556243 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr13 32317055 32317088 -69556081 + AT_rich Low_complexity Low_complexity 1 33 0 195 302 0 0 chr13 32317588 32317631 -69555538 - MIR SINE MIR -55 153 111 2831 228 145 10 chr13 32317756 32318973 -69554196 + L1MB1 LINE L1 4603 5990 -199 1693 217 167 11 chr13 32318614 32319137 -69554032 + L1ME1 LINE L1 5566 6333 -1 * 306 106 0 0 chr13 32319840 32319887 -69553282 + (CA)n Simple_repeat Simple_repeat 1 47 0 2136 97 10 13 chr13 32320249 32320549 -69552620 - AluSx SINE Alu -13 299 1 28 0 0 0 chr13 32320640 32320668 -69552501 + AT_rich Low_complexity Low_complexity 1 28 0 376 335 78 37 chr13 32322051 32322269 -69550900 - L2 LINE L2 -449 2865 2639 972 201 67 100 chr13 32322269 32322761 -69550408 + L1MC5 LINE L1 7179 7654 -307 694 289 144 29 chr13 32322967 32323517 -69549652 - L2 LINE L2 -972 2342 1730 3011 165 40 44 chr13 32323684 32324326 -69548843 + L1MB7 LINE L1 5526 6165 -19 25 0 0 0 chr13 32324667 32324692 -69548477 + AT_rich Low_complexity Low_complexity 1 25 0 262 261 29 0 chr13 32326448 32326517 -69546652 + MIR SINE MIR 13 83 -179 559 194 0 0 chr13 32327031 32327129 -69546040 - Tigger7 DNA MER2_type -1 2490 2393 * 1290 180 66 23 chr13 32327127 32327383 -69545786 - Tigger7 DNA MER2_type -466 267 1 511 249 168 6 chr13 32328804 32328977 -69544192 - MIR SINE MIR -14 248 48 303 232 29 0 chr13 32329026 32329095 -69544074 - MIR SINE MIR -190 72 2 2076 83 8 8 chr13 32329345 32329611 -69543558 - AluSg SINE Alu -6 304 39 748 243 122 9 chr13 32329679 32329893 -69543276 + MIR SINE MIR 22 259 -3 251 276 103 26 chr13 32329957 32330073 -69543096 - L1ME LINE L1 -361 5760 5636 209 189 0 0 chr13 32330268 32330305 -69542864 + (TG)n Simple_repeat Simple_repeat 1 37 0 494 320 11 6 chr13 32332500 32332678 -69540491 - MIR SINE MIR -20 242 64 198 0 0 0 chr13 32332789 32332811 -69540358 + (T)n Simple_repeat Simple_repeat 1 22 0 944 247 13 17 chr13 32333066 32333297 -69539872 + MIR SINE MIR 8 237 -25 221 250 103 59 chr13 32333352 32333488 -69539681 - L3 LINE CR1 -22 1555 1414 219 310 18 18 chr13 32333507 32333620 -69539549 + (TGAG)n Simple_repeat Simple_repeat 2 114 0 253 203 31 31 chr13 32334135 32334199 -69538970 + MIR SINE MIR 31 94 -168 879 130 0 0 chr13 32336412 32336558 -69536611 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 260 282 36 55 chr13 32336558 32336668 -69536501 - L2 LINE L2 -13 3300 3193 222 306 28 122 chr13 32336725 32336905 -69536264 + L3 LINE CR1 1413 1575 -2 732 266 68 14 chr13 32337202 32337424 -69535745 - MIR SINE MIR -15 247 14 338 250 114 0 chr13 32338351 32338439 -69534730 + MIR SINE MIR 87 184 -78 2176 105 3 13 chr13 32338641 32338946 -69534223 - AluSx SINE Alu -6 306 5 423 305 105 14 chr13 32339405 32340014 -69533155 - L1M4 LINE L1 -376 5802 5123 * 433 296 65 63 chr13 32340004 32340152 -69533017 - L1M4 LINE L1 -1247 4899 4753 2508 76 0 3 chr13 32340152 32340456 -69532713 - AluSx SINE Alu -9 303 1 433 296 65 63 chr13 32340456 32340784 -69532385 - L1M4 LINE L1 -1393 4753 4422 5890 150 48 4 chr13 32340816 32341909 -69531260 - L1MC2 LINE L1 -10 6334 5195 1067 143 90 97 chr13 32342230 32342509 -69530660 - MLT1A1 LTR MaLR 0 365 89 419 263 53 8 chr13 32343092 32343225 -69529944 - MER117 DNA MER1_type -58 139 1 216 0 0 0 chr13 32343847 32343871 -69529298 + (T)n Simple_repeat Simple_repeat 1 24 0 940 184 19 0 chr13 32344806 32344964 -69528205 + FRAM SINE Alu 5 165 -1 392 264 45 36 chr13 32345983 32346093 -69527076 + L2 LINE L2 3203 3313 0 386 240 80 40 chr13 32346749 32346899 -69526270 + MIR SINE MIR 57 212 -50 5904 113 12 5 chr13 32346931 32347808 -69525361 - Tigger3b DNA MER2_type -3 1228 345 637 210 48 8 chr13 32347829 32347953 -69525216 - FLAM_A SINE Alu -13 129 1 2190 142 21 0 chr13 32347953 32348290 -69524879 - Tigger3b DNA MER2_type -887 344 1 262 290 0 0 chr13 32348345 32348414 -69524755 - MIR SINE MIR -43 219 151 1981 147 0 10 chr13 32348438 32348763 -69524406 + AluSx SINE Alu 1 312 0 1479 231 117 25 chr13 32349156 32349597 -69523572 - MLT2B1 LTR ERVL -20 534 1 385 266 48 16 chr13 32349830 32349954 -69523215 - L2 LINE L2 -22 3250 3123 278 264 58 11 chr13 32350021 32350108 -69523061 - MIR SINE MIR -66 196 106 480 264 24 16 chr13 32350203 32350328 -69522841 - L2 LINE L2 -1 3271 3146 189 178 0 0 chr13 32350927 32350972 -69522197 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 537 248 105 13 chr13 32353367 32353520 -69519649 + MER5B DNA MER1_type 12 178 0 2381 167 44 15 chr13 32353546 32354000 -69519169 + MLT1C LTR MaLR 1 467 0 459 314 89 5 chr13 32355161 32355352 -69517817 + MIR SINE MIR 13 219 -43 2357 194 55 28 chr13 32355532 32355994 -69517175 + MLT2B1 LTR ERVL 1 449 -71 213 39 0 0 chr13 32355994 32356020 -69517149 + (TG)n Simple_repeat Simple_repeat 2 27 0 572 0 15 0 chr13 32356022 32356090 -69517079 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 2357 194 55 28 chr13 32356090 32356130 -69517039 + MLT2B1 LTR ERVL 449 520 0 210 366 162 0 chr13 32356423 32356565 -69516604 + L2 LINE L2 3089 3253 -19 462 259 30 104 chr13 32356663 32356702 -69516467 - MIR SINE MIR -17 245 205 1630 185 3 7 chr13 32356702 32356994 -69516175 - AluJo SINE Alu -11 301 11 462 259 30 104 chr13 32356994 32357155 -69516014 - MIR SINE MIR -57 205 60 2543 135 23 18 chr13 32357804 32358188 -69514981 - MLT1B LTR MaLR -4 386 1 262 277 12 12 chr13 32359922 32360005 -69513164 + MIR SINE MIR 147 229 -33 1801 187 30 18 chr13 32361222 32361559 -69511610 - MER2 DNA MER2_type -3 341 1 210 162 0 0 chr13 32362438 32362475 -69510694 + T-rich Low_complexity Low_complexity 1 37 0 233 314 29 0 chr13 32364627 32364697 -69508472 - L3b LINE CR1 -165 1418 1347 22 56 0 0 chr13 32367507 32367543 -69505626 + AT_rich Low_complexity Low_complexity 1 36 0 277 283 236 0 chr13 32368107 32368213 -69504956 - MIR3 SINE MIR -21 187 57 196 341 39 8 chr13 32369701 32369830 -69503339 - MIR SINE MIR -8 254 122 1004 197 111 0 chr13 32369949 32370147 -69503022 - MER58A DNA MER1_type -4 220 1 844 160 0 0 chr13 32372520 32372651 -69500518 - FLAM_A SINE Alu -2 131 1 782 261 73 8 chr13 32372672 32372906 -69500263 - MIR SINE MIR 0 262 14 735 242 36 49 chr13 32373559 32373782 -69499387 + MIR SINE MIR 11 230 -32 296 264 96 96 chr13 32373858 32374025 -69499144 - MARNA DNA Mariner -277 309 143 7111 188 60 20 chr13 32374038 32375832 -69497337 + L1M4 LINE L1 3659 5514 -664 561 193 46 18 chr13 32376100 32376209 -69496960 + MER81 DNA DNA 3 114 0 644 212 33 78 chr13 32376221 32376543 -69496626 + MLT1J1 LTR MaLR 75 377 -69 2339 106 0 6 chr13 32377163 32377475 -69495694 + AluSx SINE Alu 1 310 -2 198 266 89 13 chr13 32377483 32377562 -69495607 + MIR SINE MIR 175 259 -3 1245 301 38 7 chr13 32377639 32378057 -69495112 - LTR16B LTR ERVL 0 464 34 2376 101 0 0 chr13 32378166 32378462 -69494707 - AluSx SINE Alu -16 296 1 2160 207 38 54 chr13 32379123 32379410 -69493759 - MER69B DNA AcHobo -1308 1218 928 2249 109 0 13 chr13 32379410 32379713 -69493456 - AluSx SINE Alu -12 300 2 2160 207 38 54 chr13 32379713 32380050 -69493119 - MER69B DNA AcHobo -1598 928 604 2058 160 46 29 chr13 32380050 32380162 -69493007 - MER95 LTR ERV 0 431 322 2303 115 0 0 chr13 32380162 32380457 -69492712 + AluSx SINE Alu 1 295 -17 2058 160 46 29 chr13 32380457 32380756 -69492413 - MER95 LTR ERV -109 322 13 1388 260 64 25 chr13 32380758 32381242 -69491927 - MER69B DNA AcHobo -618 608 106 277 263 91 63 chr13 32381384 32381559 -69491610 - Tigger8 DNA MER2_type -5 661 482 682 319 84 4 chr13 32381852 32382125 -69491044 - L1MC/D LINE L1 -2042 5766 5472 1775 82 0 5 chr13 32382126 32382345 -69490824 - AluSq SINE Alu -84 229 12 231 61 0 0 chr13 32382370 32382403 -69490766 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 291 250 12 12 chr13 32382411 32382491 -69490678 - L1MC/D LINE L1 -2330 5478 5399 238 279 139 0 chr13 32382545 32382631 -69490538 - MLT1E3 LTR MaLR -414 210 113 285 73 24 0 chr13 32382786 32382827 -69490342 + tRNA-Cys-TGC tRNA tRNA 2 43 -32 576 264 87 109 chr13 32382852 32383405 -69489764 - L1MC/D LINE L1 -925 5221 4657 2551 66 0 0 chr13 32383405 32383707 -69489462 + AluY SINE Alu 1 302 -9 576 264 87 109 chr13 32383707 32384366 -69488803 - L1MC/D LINE L1 -1489 4657 4036 232 152 22 0 chr13 32384860 32384906 -69488263 - Tigger8 DNA MER2_type -410 256 210 4322 83 2 0 chr13 32385027 32385580 -69487589 - MER41A LTR ERV1 0 554 1 268 267 67 44 chr13 32385670 32385760 -69487409 - MER63A DNA MER1_type -24 186 95 1792 158 3 45 chr13 32385941 32386251 -69486918 - AluJo SINE Alu -15 297 1 386 283 70 44 chr13 32387299 32387571 -69485598 - MLT1J LTR MaLR -2 509 231 3737 153 38 31 chr13 32387587 32387691 -69485478 + L1MC1 LINE L1 5618 5720 -613 2288 142 25 0 chr13 32387691 32388044 -69485125 + THE1B LTR MaLR 1 362 -2 3737 153 38 31 chr13 32388044 32388352 -69484817 + L1MC1 LINE L1 5720 6024 -309 2252 164 36 7 chr13 32388352 32388766 -69484403 + MSTB LTR MaLR 1 426 0 3737 153 38 31 chr13 32388766 32389063 -69484106 + L1MC1 LINE L1 6024 6333 0 291 213 16 0 chr13 32389135 32389196 -69483973 - MLT1J LTR MaLR -331 180 119 2062 105 40 0 chr13 32389472 32389748 -69483421 - AluSx SINE Alu -18 294 8 227 298 12 24 chr13 32390023 32390107 -69483062 + LTR67 LTR ERVL 64 146 -411 21 0 0 0 chr13 32390310 32390331 -69482838 + AT_rich Low_complexity Low_complexity 1 21 0 253 260 0 2 chr13 32391075 32391149 -69482020 + MLT1J LTR MaLR 44 153 -332 368 265 53 15 chr13 32391371 32391503 -69481666 + LTR67 LTR ERVL 408 544 -13 572 336 37 4 chr13 32391527 32391768 -69481401 + MIR SINE MIR 1 249 -13 466 270 90 0 chr13 32394248 32394426 -69478743 + MIR SINE MIR 66 259 -3 2037 119 48 3 chr13 32395929 32396223 -69476946 + AluSx SINE Alu 1 307 -5 2347 103 3 0 chr13 32396225 32396527 -69476642 + AluSp SINE Alu 1 303 -10 479 335 78 14 chr13 32396586 32396916 -69476253 - L2 LINE L2 -218 3054 2708 23 0 0 0 chr13 32397995 32398018 -69475151 + AT_rich Low_complexity Low_complexity 1 23 0 215 318 89 30 chr13 32398511 32398747 -69474422 - L2 LINE L2 -191 3081 2832 326 138 17 0 chr13 32399299 32399357 -69473812 - MIR SINE MIR -114 148 90 1725 156 60 7 chr13 32399542 32399824 -69473345 - AluJo SINE Alu -15 297 1 792 291 96 46 chr13 32399843 32400309 -69472860 - L1ME4a LINE L1 -6 6115 5619 1834 159 0 30 chr13 32400309 32400605 -69472564 - AluJb SINE Alu -21 291 5 792 291 96 46 chr13 32400605 32400661 -69472508 - L1ME4a LINE L1 -502 5619 5567 2139 115 41 0 chr13 32400844 32401184 -69471985 - L1MA5A LINE L1 0 6297 5944 372 304 43 7 chr13 32401274 32401412 -69471757 - MIR SINE MIR -118 144 2 1123 89 0 21 chr13 32401463 32401697 -69471472 + (GGA)n Simple_repeat Simple_repeat 1 230 0 2473 59 3 13 chr13 32402931 32403237 -69469932 - AluY SINE Alu -8 303 1 2371 120 0 0 chr13 32403835 32404144 -69469025 - AluSx SINE Alu -3 309 1 1803 149 26 13 chr13 32404954 32405262 -69467907 + AluJo SINE Alu 1 312 0 198 111 56 0 chr13 32405908 32405944 -69467225 - L2 LINE L2 -8 3305 3268 252 0 0 0 chr13 32406345 32406373 -69466796 + (T)n Simple_repeat Simple_repeat 1 28 0 1167 189 18 40 chr13 32406729 32406800 -69466369 + MER58A DNA MER1_type 1 72 -2348 2222 117 0 3 chr13 32406800 32407099 -69466070 + AluSg SINE Alu 1 298 -12 1167 189 18 40 chr13 32407099 32407255 -69465914 + MER58A DNA MER1_type 72 223 -1 23 0 0 0 chr13 32407273 32407296 -69465873 + AT_rich Low_complexity Low_complexity 1 23 0 351 210 50 20 chr13 32407371 32407471 -69465698 + MER117 DNA MER1_type 1 103 -94 2308 95 0 3 chr13 32412333 32412628 -69460541 - AluSc SINE Alu -15 294 1 3206 123 12 18 chr13 32412644 32413150 -69460019 - L1PB4 LINE L1 -1 6155 5653 1489 201 36 10 chr13 32414230 32414539 -69458630 - L1ME LINE L1 -479 5683 5367 477 217 60 30 chr13 32414565 32414731 -69458438 - L1ME LINE L1 -868 5278 5108 1659 195 0 16 chr13 32414743 32415050 -69458119 - AluJo SINE Alu -10 302 1 1453 133 44 0 chr13 32415664 32415890 -69457279 + MER46A DNA MER2_type 1 236 0 831 139 0 16 chr13 32416575 32416697 -69456472 + FLAM_A SINE Alu 7 126 -16 1068 170 32 50 chr13 32416761 32416979 -69456190 - MER20 DNA MER1_type -5 214 1 24 32 0 0 chr13 32417057 32417088 -69456081 + AT_rich Low_complexity Low_complexity 1 31 0 450 171 13 0 chr13 32417195 32417271 -69455898 + MER3 DNA MER1_type 1 77 -132 235 324 49 10 chr13 32417433 32417535 -69455634 - HAL1 LINE L1 -1995 512 407 252 0 0 0 chr13 32417546 32417574 -69455595 + (TG)n Simple_repeat Simple_repeat 2 29 0 437 200 0 0 chr13 32417574 32417644 -69455525 - MER58A DNA MER1_type -37 70 1 554 191 122 27 chr13 32418479 32418626 -69454543 + MER5B DNA MER1_type 1 161 -17 21 0 0 0 chr13 32419700 32419721 -69453448 + AT_rich Low_complexity Low_complexity 1 21 0 333 202 164 112 chr13 32421911 32422198 -69450971 - MLT1K LTR MaLR -13 575 274 509 193 66 66 chr13 32423086 32423252 -69449917 + L2 LINE L2 3143 3308 -5 253 230 40 0 chr13 32424105 32424179 -69448990 + (TA)n Simple_repeat Simple_repeat 2 78 0 224 238 0 0 chr13 32424437 32424479 -69448690 + (ATG)n Simple_repeat Simple_repeat 3 44 0 228 239 291 22 chr13 32424571 32424705 -69448464 + MLT2F LTR ERVL 5 174 -489 579 204 45 19 chr13 32424733 32424890 -69448279 + MLT2F LTR ERVL 248 408 -255 587 284 18 0 chr13 32425055 32425224 -69447945 - MIR SINE MIR -84 178 7 389 227 103 0 chr13 32425326 32425423 -69447746 + L1MA4 LINE L1 6187 6293 -7 1063 185 0 0 chr13 32425490 32425663 -69447506 - FAM SINE Alu -2 173 1 471 256 62 0 chr13 32429267 32429396 -69443773 + MER5A DNA MER1_type 51 187 -2 444 315 61 30 chr13 32429454 32429651 -69443518 + MIR SINE MIR 58 260 -2 496 242 48 0 chr13 32430259 32430383 -69442786 - L2 LINE L2 -1 3312 3183 474 262 262 12 chr13 32430668 32431091 -69442078 - L2 LINE L2 -385 2929 2401 2611 149 19 18 chr13 32431791 32432248 -69440921 + MLT1C LTR MaLR 1 384 -12 648 275 156 16 chr13 32432258 32432627 -69440542 - L2 LINE L2 -174 3139 2701 3635 147 34 8 chr13 32432825 32433464 -69439705 + L1MB3 LINE L1 5526 6181 -2 357 337 64 16 chr13 32433668 32433855 -69439314 - L3b LINE CR1 -155 1428 1233 527 172 278 41 chr13 32434671 32434840 -69438329 + MER3 DNA MER1_type 1 209 0 421 204 30 68 chr13 32435178 32435310 -69437859 + L1ME3A LINE L1 6044 6170 0 192 354 26 9 chr13 32439153 32439266 -69433903 - L2 LINE L2 -1 3271 3157 332 187 103 56 chr13 32440191 32440298 -69432871 - MER91C DNA MER1_type -27 113 2 227 204 0 0 chr13 32440897 32440941 -69432228 - L2 LINE L2 -224 3048 3005 546 266 248 45 chr13 32441286 32441726 -69431443 + MLT1H LTR MaLR 21 549 0 433 294 119 24 chr13 32441800 32442052 -69431117 - L2 LINE L2 -793 2521 2246 726 216 35 24 chr13 32442658 32442856 -69430313 - MIR SINE MIR -39 223 23 372 222 17 60 chr13 32444288 32444405 -69428764 - MIR SINE MIR -1 261 150 1563 220 33 66 chr13 32444513 32445188 -69427981 + LTR9 LTR ERV1 1 612 0 647 221 147 0 chr13 32445708 32445871 -69427298 - L2 LINE L2 0 3313 3127 2096 119 0 7 chr13 32446305 32446615 -69426554 + AluSq SINE Alu 1 308 -5 225 230 380 10 chr13 32448565 32448665 -69424504 - MIR3 SINE MIR -52 156 20 181 286 0 0 chr13 32448736 32448778 -69424391 - L2 LINE L2 -93 3220 3179 992 302 77 25 chr13 32450360 32450917 -69422252 + L1ME4a LINE L1 5518 6103 -18 421 162 31 2 chr13 32451807 32451896 -69421273 - MER5A DNA MER1_type -93 85 4 201 132 53 0 chr13 32455448 32455486 -69417683 + CT-rich Low_complexity Low_complexity 2 41 0 604 254 36 0 chr13 32455536 32455674 -69417495 - MIR3 SINE MIR -27 181 39 815 255 100 81 chr13 32456590 32457069 -69416100 + MLT1J LTR MaLR 24 511 0 205 273 0 0 chr13 32458159 32458214 -69414955 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 23 33 0 0 chr13 32460050 32460080 -69413089 + AT_rich Low_complexity Low_complexity 1 30 0 237 291 76 0 chr13 32460812 32460891 -69412278 + L2 LINE L2 2648 2732 -582 409 339 89 22 chr13 32461159 32461383 -69411786 - L1ME LINE L1 -327 5794 5556 219 132 57 19 chr13 32461895 32461948 -69411221 + (CATA)n Simple_repeat Simple_repeat 4 58 0 221 264 0 109 chr13 32462870 32462980 -69410189 + MIR SINE MIR 109 206 -56 973 216 0 24 chr13 32463142 32463355 -69409814 - MIR SINE MIR -37 225 18 248 264 126 84 chr13 32463431 32463692 -69409477 + L2 LINE L2 1042 1313 -2001 1612 164 16 31 chr13 32463842 32464159 -69409010 + AluJo SINE Alu 1 312 0 639 276 93 115 chr13 32464173 32464988 -69408181 + L2 LINE L2 1586 2382 -932 286 306 49 44 chr13 32465104 32465417 -69407752 - L2 LINE L2 -216 3056 2698 2179 88 0 7 chr13 32465659 32465954 -69407215 - AluSp SINE Alu -20 293 1 33 0 0 0 chr13 32467534 32467567 -69405602 + GC_rich Low_complexity Low_complexity 1 33 0 221 211 0 40 chr13 32467786 32467862 -69405307 + C-rich Low_complexity Low_complexity 5 77 0 215 237 53 0 chr13 32467875 32467951 -69405218 + (CG)n Simple_repeat Simple_repeat 1 80 0 * 244 282 28 33 chr13 32467908 32468089 -69405080 + (CGTG)n Simple_repeat Simple_repeat 1 180 0 302 363 71 12 chr13 32468827 32468995 -69404174 - MIR SINE MIR -70 192 15 1686 150 49 0 chr13 32469377 32469663 -69403506 - AluJb SINE Alu -12 300 1 256 330 11 11 chr13 32470050 32470144 -69403025 - MIR SINE MIR -7 255 162 305 311 87 0 chr13 32470365 32470468 -69402701 - L2 LINE L2 -1 3271 3160 1803 181 25 60 chr13 32471669 32471957 -69401212 - MLT1B LTR MaLR -5 385 112 2163 90 0 0 chr13 32471957 32472339 -69400830 - AluSc SINE Alu 0 382 1 1803 181 25 60 chr13 32472339 32472448 -69400721 - MLT1B LTR MaLR -278 112 1 431 235 228 12 chr13 32472547 32472709 -69400460 + MIR SINE MIR 65 261 -1 1359 142 5 0 chr13 32473012 32473224 -69399945 + AluSg/x SINE Alu 99 311 -1 1735 183 0 6 chr13 32473767 32474078 -69399091 + AluJo SINE Alu 1 309 -3 271 276 71 61 chr13 32474197 32474295 -69398874 - L2 LINE L2 -33 3280 3182 382 309 175 12 chr13 32474787 32475033 -69398136 + L2 LINE L2 1535 1820 -1494 916 338 93 46 chr13 32475055 32476276 -69396893 + L2 LINE L2 1968 3257 -15 206 302 0 0 chr13 32476278 32476331 -69396838 + L2 LINE L2 3204 3256 -16 1594 307 69 32 chr13 32477788 32478305 -69394864 + L2 LINE L2 1949 2504 -810 1830 152 0 0 chr13 32478305 32478595 -69394574 - AluSx SINE Alu -22 290 1 1594 307 69 32 chr13 32478595 32478864 -69394305 + L2 LINE L2 2504 2761 -553 184 347 105 0 chr13 32478872 32478967 -69394202 - L2 LINE L2 -922 2392 2288 1354 124 10 0 chr13 32479443 32479637 -69393532 + AluSg/x SINE Alu 107 302 -10 675 291 34 13 chr13 32480135 32480372 -69392797 - MIR SINE MIR -7 255 14 679 294 97 0 chr13 32481798 32482036 -69391133 + L2 LINE L2 2912 3172 -141 401 238 0 36 chr13 32482022 32482106 -69391063 - L2 LINE L2 -20 3293 3213 * 2082 182 46 26 chr13 32482237 32482654 -69390515 - MSTC LTR MaLR 0 428 4 254 262 71 50 chr13 32482945 32483086 -69390083 - L1MC/D LINE L1 -1919 5889 5746 2385 88 0 7 chr13 32483469 32483777 -69389392 - AluSq SINE Alu -7 306 1 313 203 163 2 chr13 32484298 32484447 -69388722 + MER63 DNA MER1_type 1 1688 0 1226 259 86 88 chr13 32484581 32485175 -69387994 - MLT1G1 LTR MaLR 0 595 3 1334 131 11 24 chr13 32485249 32485401 -69387768 - MSTB1 LTR MaLR 0 426 273 2341 95 7 0 chr13 32485401 32485696 -69387473 - AluSq SINE Alu -16 297 1 1334 131 11 24 chr13 32485696 32485898 -69387271 - MSTB1 LTR MaLR -153 273 1 506 274 159 44 chr13 32486024 32486407 -69386762 - L2 LINE L2 0 3313 2887 630 319 98 30 chr13 32486426 32486918 -69386251 - L2 LINE L2 -1052 2262 1738 275 271 37 28 chr13 32487380 32487487 -69385682 - MIR3 SINE MIR -8 200 93 22 0 0 0 chr13 32487777 32487799 -69385370 + AT_rich Low_complexity Low_complexity 1 22 0 2320 174 120 62 chr13 32488050 32488791 -69384378 + Harlequin LTR ERV1 957 1740 -5156 * 5595 108 8 4 chr13 32488769 32489563 -69383606 + Harlequin LTR ERV1 7603 8399 0 232 269 0 0 chr13 32489563 32489615 -69383554 + LTR30 LTR ERV1 1 52 -670 2631 109 11 92 chr13 32489615 32490081 -69383088 + LTR12 LTR ERV1 53 480 -234 209 179 0 54 chr13 32490608 32490664 -69382505 - MIR SINE MIR -120 142 90 2145 89 0 38 chr13 32490700 32491023 -69382146 - AluSp SINE Alu 0 313 2 944 214 145 126 chr13 32491067 32491783 -69381386 - L1ME3A LINE L1 -23 6130 5401 338 125 0 0 chr13 32491801 32491849 -69381320 + Charlie3 DNA MER1_type 221 268 -2442 648 295 71 14 chr13 32491849 32492332 -69380837 - L1ME3A LINE L1 -738 5407 4868 612 237 132 0 chr13 32492963 32493142 -69380027 + LTR41 LTR ERVL 9 239 -556 794 240 6 6 chr13 32493333 32493516 -69379653 - L1MC4 LINE L1 -982 7060 6878 1393 266 46 57 chr13 32493516 32494060 -69379109 - L1ME3A LINE L1 -1814 4315 3778 707 293 63 52 chr13 32494358 32494880 -69378289 - L1ME3A LINE L1 -5061 1058 531 3998 105 15 11 chr13 32494881 32495405 -69377764 + MER1A DNA MER1_type 1 526 -1 462 234 199 0 chr13 32495774 32495945 -69377224 - L2 LINE L2 -773 2541 2337 317 93 93 0 chr13 32495955 32496009 -69377160 + HSMAR1 DNA Mariner 1229 1287 0 272 301 12 0 chr13 32496009 32496092 -69377077 - L2 LINE L2 -992 2322 2239 589 260 103 5 chr13 32496835 32497039 -69376130 - MIR SINE MIR -4 258 35 2177 169 22 37 chr13 32497946 32498355 -69374814 + MER57A LTR ERV1 1 403 0 413 237 0 0 chr13 32499108 32499184 -69373985 - MER5A DNA MER1_type -83 106 31 324 0 0 0 chr13 32499632 32499668 -69373501 + (TG)n Simple_repeat Simple_repeat 2 37 0 667 284 125 58 chr13 32500285 32500764 -69372405 - MLT1K LTR MaLR -2 586 76 2426 67 0 10 chr13 32501020 32501318 -69371851 - AluY SINE Alu -16 295 1 2205 119 7 0 chr13 32501389 32501684 -69371485 - AluSx SINE Alu -15 297 1 676 321 160 8 chr13 32501684 32502154 -69371015 - L3 LINE CR1 -193 1384 844 313 223 10 68 chr13 32502350 32502453 -69370716 - L1ME3A LINE L1 -99 6071 5975 2217 244 80 46 chr13 32502572 32503568 -69369601 - L1MC5 LINE L1 -439 7522 6476 644 304 67 44 chr13 32503846 32504431 -69368738 - HAL1b LINE L1 -690 658 61 23 33 0 0 chr13 32505013 32505043 -69368126 + AT_rich Low_complexity Low_complexity 1 30 0 550 331 129 18 chr13 32505946 32506327 -69366842 - L2 LINE L2 -1043 2271 1849 357 297 7 19 chr13 32507022 32507177 -69365992 - L1MC5 LINE L1 -2355 5453 5301 292 325 80 7 chr13 32508084 32508235 -69364934 - LTR16C LTR ERVL -32 459 298 220 224 0 15 chr13 32508849 32508916 -69364253 + (TA)n Simple_repeat Simple_repeat 1 66 0 1400 196 104 13 chr13 32510144 32510460 -69362709 - MER2 DNA MER2_type 0 345 1 232 287 193 7 chr13 32510480 32510630 -69362539 - MIR SINE MIR -1 261 84 344 329 35 21 chr13 32510828 32510971 -69362198 - MIR SINE MIR -98 164 20 1375 109 0 0 chr13 32511932 32512116 -69361053 - AluSp SINE Alu 0 313 130 1092 77 0 0 chr13 32512198 32512328 -69360841 - AluSp SINE Alu -183 130 1 202 300 173 55 chr13 32512918 32513028 -69360141 - MIR3 SINE MIR -72 136 14 358 252 9 54 chr13 32513945 32514015 -69359154 - MLT1J LTR MaLR -30 481 416 2428 125 122 8 chr13 32514015 32514399 -69358770 - MSTA LTR MaLR 0 428 1 358 252 9 54 chr13 32514399 32514439 -69358730 - MLT1J LTR MaLR -95 416 376 4085 137 8 20 chr13 32514477 32515132 -69358037 - MSTA-int LTR MaLR 0 1580 934 3744 53 0 7 chr13 32515134 32515585 -69357584 - LTR7 LTR ERV1 -2 448 1 2552 81 45 16 chr13 32515585 32515966 -69357203 - HERVH LTR ERV1 0 7713 7322 1365 119 20 0 chr13 32515964 32516165 -69357004 - HERVH LTR ERV1 -1894 5819 5615 * 2289 160 73 0 chr13 32516202 32516584 -69356585 - HERVH LTR ERV1 -2564 5149 4740 967 145 0 0 chr13 32516583 32516728 -69356441 - HERVH LTR ERV1 -4069 3644 3500 * 943 140 7 0 chr13 32516727 32516877 -69356292 - HERVH LTR ERV1 -4423 3290 3140 * 20507 88 26 16 chr13 32516856 32519824 -69353345 - HERVH LTR ERV1 -4718 2995 1 3693 53 5 7 chr13 32519826 32520275 -69352894 - LTR7 LTR ERV1 -2 448 1 2906 169 24 12 chr13 32520275 32520773 -69352396 - MSTA-int LTR MaLR -642 938 435 1809 139 3 7 chr13 32520786 32521073 -69352096 - MSTA-int LTR MaLR -1365 286 1 2363 143 114 5 chr13 32521073 32521459 -69351710 - MSTA LTR MaLR 0 428 1 550 268 26 103 chr13 32521608 32521825 -69351344 - MLT1J LTR MaLR -268 243 1 236 193 18 0 chr13 32522857 32522914 -69350255 + (TG)n Simple_repeat Simple_repeat 1 58 0 2274 113 0 0 chr13 32523038 32523339 -69349830 - AluSx SINE Alu -6 306 6 3439 16 5 3 chr13 32523536 32523913 -69349256 - L1PA2 LINE L1 0 6155 5778 298 317 41 16 chr13 32523982 32524105 -69349064 + L2 LINE L2 3188 3313 0 326 331 33 16 chr13 32524108 32524229 -69348940 + MIR SINE MIR 140 262 0 813 252 73 28 chr13 32524348 32524665 -69348504 + L2 LINE L2 1816 2146 -1168 488 301 154 4 chr13 32524687 32525013 -69348156 - LTR33 LTR ERVL 0 521 114 642 271 203 25 chr13 32525102 32525423 -69347746 + L2 LINE L2 2172 2549 -765 1812 164 11 3 chr13 32525475 32525761 -69347408 - AluJo SINE Alu -24 288 1 492 258 16 16 chr13 32525783 32525911 -69347258 - L2 LINE L2 -3 3269 3142 2595 177 22 0 chr13 32526325 32526772 -69346397 + LTR32 LTR ERVL 15 471 0 257 239 113 31 chr13 32527498 32527668 -69345501 + L1ME LINE L1 1043 1311 -5323 1794 179 43 3 chr13 32528455 32528780 -69344389 - MER74A LTR ERVL -187 371 34 574 290 39 23 chr13 32529166 32529428 -69343741 - L1M4 LINE L1 -1949 4197 3935 181 0 0 0 chr13 32529609 32529629 -69343540 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 2023 96 19 4 chr13 32529629 32529900 -69343269 - AluSq SINE Alu -28 285 11 2642 87 6 6 chr13 32529980 32530335 -69342834 + THE1A LTR MaLR 1 355 0 463 276 35 14 chr13 32531892 32532037 -69341132 + MIR SINE MIR 4 151 -111 628 193 118 57 chr13 32532583 32532665 -69340504 + L1ME3 LINE L1 5917 5993 -169 2162 113 0 0 chr13 32532665 32532989 -69340180 - AluSx SINE Alu 0 324 1 628 193 118 57 chr13 32532989 32533133 -69340036 + L1ME3 LINE L1 5993 6158 -4 705 246 82 35 chr13 32533596 32533828 -69339341 + MIR SINE MIR 15 257 -5 21 0 0 0 chr13 32534958 32534979 -69338190 + AT_rich Low_complexity Low_complexity 1 21 0 264 320 0 0 chr13 32535361 32535439 -69337730 + L2 LINE L2 3231 3308 -5 2870 140 39 51 chr13 32535756 32536208 -69336961 + L1MB2 LINE L1 5601 6046 -125 1855 157 30 7 chr13 32536208 32536513 -69336656 + AluJo SINE Alu 1 312 0 2870 140 39 51 chr13 32536513 32536631 -69336538 + L1MB2 LINE L1 6046 6164 -7 210 91 0 0 chr13 32536666 32536699 -69336470 + (TCTCTG)n Simple_repeat Simple_repeat 5 37 0 480 266 0 9 chr13 32536703 32536812 -69336357 - MER45C DNA AcHobo -149 804 697 935 242 127 29 chr13 32536837 32537151 -69336018 - MER45C DNA AcHobo -608 345 1 1360 186 0 23 chr13 32537528 32537791 -69335378 + AluJo SINE Alu 40 296 -16 381 171 288 14 chr13 32538066 32538212 -69334957 - MER5A DNA MER1_type 0 189 4 260 264 9 47 chr13 32538315 32538421 -69334748 + L2 LINE L2 2994 3095 -177 1491 190 108 78 chr13 32538562 32538728 -69334441 - MLT1D LTR MaLR 0 505 346 207 0 0 0 chr13 32538728 32538751 -69334418 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1491 190 108 78 chr13 32538751 32539074 -69334095 - MLT1D LTR MaLR -159 346 1 468 286 23 41 chr13 32542208 32542379 -69330790 - MER5B DNA MER1_type -6 172 5 2296 93 3 0 chr13 32542403 32542693 -69330476 - AluSx SINE Alu -21 291 1 649 131 0 10 chr13 32543272 32543371 -69329798 + MER4A LTR ERV1 1 98 -566 1925 123 3 59 chr13 32543371 32543737 -69329432 + MER4A LTR ERV1 261 664 0 35 24 0 0 chr13 32543958 32544000 -69329169 + AT_rich Low_complexity Low_complexity 1 42 0 661 157 33 0 chr13 32544001 32544122 -69329047 - L1MB1 LINE L1 -1 6167 6043 1674 152 165 70 chr13 32544127 32544496 -69328673 - MER4A LTR ERV1 0 664 261 538 122 89 0 chr13 32544496 32544586 -69328583 - MER4A LTR ERV1 -566 98 1 16656 106 85 54 chr13 32544587 32548334 -69324835 - MER4A-int LTR ERV1 0 6598 1303 2300 107 0 0 chr13 32548334 32548623 -69324546 - AluSg SINE Alu -21 289 1 16656 106 85 54 chr13 32548623 32548773 -69324396 - MER4A-int LTR ERV1 -5295 1303 1159 944 112 158 112 chr13 32548768 32548989 -69324180 - MER4A-int LTR ERV1 -4236 1268 1059 * 408 71 0 0 chr13 32548989 32549045 -69324124 + (CA)n Simple_repeat Simple_repeat 2 57 0 944 112 158 112 chr13 32549045 32549163 -69324006 - MER4A-int LTR ERV1 -4445 1059 503 * 2934 104 144 22 chr13 32549149 32549685 -69323484 - MER4A-int LTR ERV1 -5997 601 1 1733 143 162 73 chr13 32549688 32550059 -69323110 - MER4A LTR ERV1 0 664 261 528 101 101 0 chr13 32550059 32550148 -69323021 - MER4A LTR ERV1 -566 98 1 4052 106 2 7 chr13 32550152 32550707 -69322462 - MER41A LTR ERV1 -2 552 1 3859 149 32 53 chr13 32550707 32550809 -69322360 - L1MB1 LINE L1 -125 6043 5940 2124 135 10 0 chr13 32550809 32551106 -69322063 - AluSx SINE Alu -12 300 1 3859 149 32 53 chr13 32551106 32551795 -69321374 - L1MB1 LINE L1 -228 5940 5279 281 233 111 0 chr13 32552347 32552437 -69320732 + L1ME4a LINE L1 6020 6119 -2 242 254 36 0 chr13 32552462 32552517 -69320652 + polypurine Low_complexity Low_complexity 2 58 0 195 69 0 0 chr13 32553050 32553079 -69320090 + (CA)n Simple_repeat Simple_repeat 2 30 0 200 314 196 0 chr13 32553213 32553315 -69319854 + L2 LINE L2 3149 3270 -2 189 298 0 0 chr13 32553489 32553536 -69319633 - MER5A DNA MER1_type -2 187 141 500 259 59 12 chr13 32554112 32554282 -69318887 + LTR33A LTR ERVL 346 523 0 1765 164 9 46 chr13 32554458 32554782 -69318387 - AluJo SINE Alu 0 312 1 340 256 151 10 chr13 32555772 32555971 -69317198 - MER110A LTR ERV1 0 468 242 45 0 0 0 chr13 32556562 32556607 -69316562 + AT_rich Low_complexity Low_complexity 1 45 0 1280 160 29 8 chr13 32556638 32556882 -69316287 - L1MB3 LINE L1 -2 6181 5933 4186 97 0 4 chr13 32556882 32557438 -69315731 - MER41A LTR ERV1 0 554 1 9412 63 50 40 chr13 32557442 32557693 -69315476 - MER41A-int LTR ERV1 -8 5938 5691 2165 91 35 0 chr13 32557693 32557980 -69315189 - AluSc SINE Alu -12 297 1 9412 63 50 40 chr13 32557980 32559080 -69314089 - MER41A-int LTR ERV1 -255 5691 4574 5229 118 59 47 chr13 32559062 32560530 -69312639 - MER41A-int LTR ERV1 -1906 4273 2186 * 865 168 37 6 chr13 32560510 32560671 -69312498 - MER41A-int LTR ERV1 -5308 638 473 * 953 155 0 0 chr13 32560658 32560800 -69312369 - MER41A-int LTR ERV1 -5426 520 379 3505 158 23 7 chr13 32560834 32561405 -69311764 - LTR22 LTR ERVK 0 580 1 2746 108 11 3 chr13 32561405 32561786 -69311383 - MER41A-int LTR ERV1 -5562 384 1 4117 88 18 0 chr13 32561786 32562330 -69310839 - MER41A LTR ERV1 0 554 1 461 169 0 0 chr13 32562330 32562407 -69310762 - L1MB3 LINE L1 -247 5933 5857 530 267 79 20 chr13 32562655 32562857 -69310312 + MIR SINE MIR 2 215 -47 1891 151 7 13 chr13 32562953 32563258 -69309911 - AluJb SINE Alu -9 303 1 964 299 22 38 chr13 32564493 32564945 -69308224 + L2 LINE L2 1949 2393 -921 2368 87 0 0 chr13 32565010 32565297 -69307872 - AluSc SINE Alu -22 287 1 673 156 9 0 chr13 32565297 32565406 -69307763 - MLT1B LTR MaLR -280 110 1 373 248 170 13 chr13 32565505 32565658 -69307511 + MIR SINE MIR 65 241 -21 1422 146 5 0 chr13 32565970 32566182 -69306987 + AluSg/x SINE Alu 99 311 -1 1720 194 3 7 chr13 32566725 32567035 -69306134 + AluJo SINE Alu 1 309 -3 198 274 16 0 chr13 32568192 32568254 -69304915 + L2 LINE L2 3250 3312 -1 2488 195 108 45 chr13 32569529 32570212 -69302957 - LTR8A LTR ERV1 0 727 2 200 273 52 91 chr13 32570230 32570384 -69302785 - L2 LINE L2 0 3313 3166 1270 256 82 8 chr13 32570405 32570772 -69302397 + MLT1I LTR MaLR 12 405 -4 217 306 35 12 chr13 32571398 32571483 -69301686 - L3 LINE CR1 -242 1335 1249 224 237 8 93 chr13 32571519 32571637 -69301532 + MIR SINE MIR 107 214 -48 352 277 52 32 chr13 32571696 32571851 -69301318 + MIR3 SINE MIR 3 160 -48 21 0 0 0 chr13 32572637 32572658 -69300511 + AT_rich Low_complexity Low_complexity 1 21 0 249 281 0 0 chr13 32573922 32573979 -69299190 + L2 LINE L2 3244 3300 -13 348 276 60 37 chr13 32574017 32574151 -69299018 + MIR3 SINE MIR 27 163 -45 4634 196 79 52 chr13 32574260 32575566 -69297603 + Charlie1a DNA MER1_type 1 1341 -114 537 148 96 17 chr13 32575673 32575788 -69297381 + Charlie1a DNA MER1_type 1332 1455 0 986 210 126 47 chr13 32576219 32576600 -69296569 + MER69 DNA AcHobo 2115 2525 -1 2218 123 0 3 chr13 32576617 32576926 -69296243 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 32577014 32577035 -69296134 + AT_rich Low_complexity Low_complexity 1 21 0 194 139 0 28 chr13 32577111 32577147 -69296022 + MIR3 SINE MIR 153 187 -21 2198 96 7 10 chr13 32577491 32577792 -69295377 - AluSg SINE Alu -10 300 1 261 221 32 32 chr13 32578188 32578283 -69294886 + (TTCA)n Simple_repeat Simple_repeat 1 95 0 1510 179 4 4 chr13 32578521 32578778 -69294391 + AluJo SINE Alu 11 267 -45 190 284 30 0 chr13 32579078 32579145 -69294024 - MIR SINE MIR -95 167 99 * 582 351 130 10 chr13 32579126 32579647 -69293522 + L2 LINE L2 2732 3313 0 209 309 48 12 chr13 32579638 32579722 -69293447 - MIR SINE MIR -156 106 20 * 1893 142 10 42 chr13 32579797 32580106 -69293063 + AluJo SINE Alu 1 299 -13 213 281 49 12 chr13 32580728 32580810 -69292359 + MIR SINE MIR 73 157 -105 367 320 20 14 chr13 32580903 32581050 -69292119 + L3 LINE CR1 1380 1527 -50 253 250 279 0 chr13 32581119 32581259 -69291910 + L2 LINE L2 2883 3061 -252 251 394 62 13 chr13 32581509 32581735 -69291434 - L2 LINE L2 -18 3254 3018 2898 231 41 3 chr13 32582011 32582640 -69290529 + MER82 DNA MER2_type 1 653 0 1271 216 134 26 chr13 32582640 32583028 -69290141 - MLT1C LTR MaLR -32 435 6 276 77 0 0 chr13 32583504 32583543 -69289626 + (A)n Simple_repeat Simple_repeat 1 39 0 312 291 122 23 chr13 32583546 32583718 -69289451 + MIR SINE MIR 64 252 -10 404 171 0 11 chr13 32583718 32583806 -69289363 + CT-rich Low_complexity Low_complexity 1 87 0 1596 184 118 19 chr13 32583812 32584226 -69288943 - MLT1C LTR MaLR -7 460 6 424 231 154 35 chr13 32586624 32586793 -69286376 + MIR SINE MIR 66 254 -8 1474 80 25 5 chr13 32586916 32587140 -69286029 + L1PA10 LINE L1 5948 6175 0 2162 93 0 81 chr13 32587145 32587466 -69285703 + AluSx SINE Alu 1 295 -17 1106 192 9 49 chr13 32587488 32587712 -69285457 + MER58A DNA MER1_type 2 216 -8 1142 233 108 17 chr13 32587799 32588102 -69285067 + MLT1A2 LTR MaLR 51 370 -4 185 309 25 37 chr13 32589282 32589363 -69283806 + MIR SINE MIR 21 100 -162 2038 107 3 17 chr13 32589873 32590164 -69283005 + AluJb SINE Alu 24 310 -2 696 201 32 78 chr13 32590220 32590504 -69282665 - L1MC5 LINE L1 -31 7930 7660 5892 193 67 84 chr13 32590627 32591898 -69281271 - L1MC4 LINE L1 0 8042 6822 384 77 0 0 chr13 32591898 32591950 -69281219 + (CA)n Simple_repeat Simple_repeat 1 52 0 5892 193 67 84 chr13 32591950 32592870 -69280299 - L1MC4 LINE L1 -1220 6822 5888 182 276 0 0 chr13 32596406 32596464 -69276705 - MIR SINE MIR -108 154 97 223 303 0 0 chr13 32596596 32596662 -69276507 + MIR SINE MIR 61 126 -136 610 258 99 5 chr13 32598792 32599005 -69274164 - MIR SINE MIR -14 248 16 299 300 17 8 chr13 32599000 32599120 -69274049 - MIR SINE MIR -76 186 66 * 510 290 43 24 chr13 32599604 32599937 -69273232 + MLT1J LTR MaLR 75 447 -64 428 221 138 48 chr13 32600625 32601031 -69272138 + MLT1E LTR MaLR 21 547 -8 358 219 14 0 chr13 32601144 32601217 -69271952 + MER91A DNA MER1_type 1 74 -122 862 232 38 21 chr13 32602700 32602937 -69270232 - L1MA9 LINE L1 -37 6275 6035 548 124 112 0 chr13 32602930 32603019 -69270150 + L1MA9 LINE L1 5681 5779 -533 * 478 115 35 0 chr13 32603019 32603106 -69270063 + (TCTA)n Simple_repeat Simple_repeat 2 91 0 1058 175 35 70 chr13 32603108 32603365 -69269804 + L1MA9 LINE L1 5793 6040 -272 260 322 144 0 chr13 32603365 32603483 -69269686 - MIR SINE MIR -78 184 50 821 130 8 23 chr13 32603982 32604105 -69269064 + FLAM_C SINE Alu 1 123 -189 294 73 0 0 chr13 32604105 32604146 -69269023 + (CA)n Simple_repeat Simple_repeat 2 42 0 266 261 41 118 chr13 32604890 32605085 -69268084 + MIR SINE MIR 33 212 -50 1016 102 7 0 chr13 32607122 32607269 -69265900 - L1PA15 LINE L1 0 6165 6018 1801 153 3 20 chr13 32607960 32608255 -69264914 - AluJo SINE Alu -22 290 1 318 268 47 55 chr13 32608929 32609056 -69264113 + MIR SINE MIR 28 153 -109 14275 67 11 0 chr13 32609288 32611946 -69261223 + L1PA6 LINE L1 3491 6154 0 232 254 200 9 chr13 32612070 32612180 -69260989 - L2 LINE L2 -21 3251 3121 1537 99 36 5 chr13 32612490 32612713 -69260456 - L1PA8 LINE L1 -24 6148 5919 563 114 114 0 chr13 32612713 32612801 -69260368 + 5S rRNA rRNA 1 98 -23 715 218 29 113 chr13 32612824 32613063 -69260106 - MER20 DNA MER1_type 0 219 1 239 307 228 8 chr13 32614294 32614421 -69258748 + MIR3 SINE MIR 21 175 -33 458 312 81 29 chr13 32616796 32617181 -69255988 + L1ME4a LINE L1 5529 5933 -188 410 195 125 0 chr13 32617182 32617310 -69255859 + L1ME4a LINE L1 5978 6121 0 185 348 67 18 chr13 32617513 32617677 -69255492 - L2 LINE L2 -1275 2039 1868 363 321 8 8 chr13 32618232 32618366 -69254803 + MIR SINE MIR 4 137 -125 201 39 0 0 chr13 32618369 32618395 -69254774 + (TAA)n Simple_repeat Simple_repeat 1 26 0 186 294 15 15 chr13 32618659 32618727 -69254442 - L2 LINE L2 -5 3308 3241 271 344 182 21 chr13 32618821 32619013 -69254156 - MIR SINE MIR -20 242 20 1112 236 99 40 chr13 32619709 32619878 -69253291 - L2 LINE L2 0 3313 3155 2197 116 3 3 chr13 32619878 32620180 -69252989 + AluSx SINE Alu 1 302 -10 219 69 0 0 chr13 32620180 32620209 -69252960 + (TA)n Simple_repeat Simple_repeat 1 29 0 1112 236 99 40 chr13 32620209 32620685 -69252484 - L2 LINE L2 -157 3156 2625 234 346 52 7 chr13 32620862 32620998 -69252171 + L2 LINE L2 3125 3266 -6 336 102 0 0 chr13 32623057 32623106 -69250063 + (TG)n Simple_repeat Simple_repeat 1 49 0 527 309 75 28 chr13 32623550 32623916 -69249253 + L1MCc LINE L1 31 446 -5977 677 296 66 34 chr13 32624300 32625065 -69248104 + L1MCc LINE L1 1129 1910 -4910 309 389 8 0 chr13 32625747 32625878 -69247291 + MIR SINE MIR 20 151 -111 747 222 35 43 chr13 32626541 32626771 -69246398 - MER112 DNA MER1_type -31 229 2 184 306 41 82 chr13 32627007 32627105 -69246064 - L2 LINE L2 -55 3217 3124 1603 199 167 12 chr13 32627188 32627590 -69245579 - MLT1C LTR MaLR 0 467 4 358 198 174 0 chr13 32628237 32628323 -69244846 - L2 LINE L2 -10 3303 3203 626 147 101 0 chr13 32628875 32629004 -69244165 - L1MB7 LINE L1 0 6184 6043 518 163 0 0 chr13 32629166 32629246 -69243923 - AluJ/FLAM SINE Alu -228 84 5 1743 181 53 0 chr13 32629609 32629947 -69243222 - L1MB4 LINE L1 -12 6168 5813 1042 167 0 0 chr13 32629947 32630109 -69243060 - AluSg/x SINE Alu -23 287 126 927 251 164 25 chr13 32631009 32631535 -69241634 + L1MC4a LINE L1 5670 6268 -1540 308 328 98 57 chr13 32631544 32631809 -69241360 + L1MC4 LINE L1 6312 6587 -1455 2299 240 28 35 chr13 32631868 32632974 -69240195 + L1MCc LINE L1 826 1945 -4887 517 284 37 25 chr13 32634216 32634378 -69238791 + MIR SINE MIR 46 209 -53 238 159 0 23 chr13 32634412 32634456 -69238713 + MER116 DNA Mariner 38 80 0 794 245 46 42 chr13 32635650 32635887 -69237282 + L1ME2 LINE L1 5883 6120 -44 256 359 35 7 chr13 32637136 32637278 -69235891 - L2 LINE L2 -10 3303 3158 243 309 0 0 chr13 32637326 32637410 -69235759 - L1MC4 LINE L1 -1338 6704 6621 676 301 70 18 chr13 32639499 32639850 -69233319 + L1ME LINE L1 5374 5652 -469 538 213 19 84 chr13 32640529 32640684 -69232485 - MIR3 SINE MIR -34 174 30 201 341 96 36 chr13 32640856 32641023 -69232146 - MIR SINE MIR -77 185 9 1159 114 0 0 chr13 32641059 32641226 -69231943 - AluSg/x SINE Alu -3 309 143 626 273 26 39 chr13 32641704 32641935 -69231234 + MIR SINE MIR 23 250 -12 611 282 31 6 chr13 32642050 32642213 -69230956 + MIR SINE MIR 48 214 -48 829 201 24 76 chr13 32642431 32642680 -69230489 + L1ME2 LINE L1 3784 4019 -2127 339 248 137 19 chr13 32642903 32643064 -69230105 + L1MC5 LINE L1 7033 7212 -749 764 258 134 42 chr13 32643182 32643262 -69229907 + L1MC5 LINE L1 7249 7320 -641 1098 156 65 15 chr13 32643262 32643461 -69229708 - MER3 DNA MER1_type 0 209 1 764 258 134 42 chr13 32643461 32643926 -69229243 + L1MC5 LINE L1 7320 7844 -117 24 32 0 0 chr13 32643979 32644010 -69229159 + AT_rich Low_complexity Low_complexity 1 31 0 28 79 0 0 chr13 32644112 32644175 -69228994 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr13 32644281 32644302 -69228867 + AT_rich Low_complexity Low_complexity 1 21 0 444 284 8 8 chr13 32644595 32644722 -69228447 + MER94 DNA DNA 7 133 -1 280 239 65 43 chr13 32645140 32645232 -69227937 - MER5B DNA MER1_type -84 94 1 227 315 141 13 chr13 32646471 32646620 -69226549 - L2 LINE L2 -173 3099 2932 2183 186 72 33 chr13 32647316 32647626 -69225543 - MLT1D LTR MaLR -3 502 165 2274 80 3 3 chr13 32647626 32647926 -69225243 - AluSp SINE Alu -13 300 1 2183 186 72 33 chr13 32647926 32648098 -69225071 - MLT1D LTR MaLR -340 165 1 13739 48 74 5 chr13 32648174 32649923 -69223246 + L1P LINE L1 3 1873 -4273 489 226 58 13 chr13 32649936 32650091 -69223078 - L1MC4 LINE L1 -273 7769 7608 6214 74 21 29 chr13 32650097 32651897 -69221272 - SVA Other Other -551 1385 4 234 0 0 0 chr13 32653347 32653373 -69219796 + (TA)n Simple_repeat Simple_repeat 2 27 0 1689 112 123 4 chr13 32653930 32654187 -69218982 + AluSx SINE Alu 1 293 -9 2326 77 3 3 chr13 32654187 32654498 -69218671 + AluY SINE Alu 1 311 0 1689 112 123 4 chr13 32654498 32654509 -69218660 + AluSx SINE Alu 293 301 -1 214 158 0 18 chr13 32654611 32654668 -69218501 + (TG)n Simple_repeat Simple_repeat 1 56 0 3084 233 57 34 chr13 32654771 32655560 -69217609 + L1ME2 LINE L1 4334 5103 -1061 1845 182 30 45 chr13 32655560 32655956 -69217213 + MLT1B LTR MaLR 1 390 0 3084 233 57 34 chr13 32655956 32656744 -69216425 + L1ME2 LINE L1 5103 5965 -199 1252 380 3 38 chr13 32656744 32657060 -69216109 + AluSq SINE Alu 1 305 -8 3084 233 57 34 chr13 32657060 32657258 -69215911 + L1ME2 LINE L1 5965 6157 -7 1140 219 0 18 chr13 32657682 32657910 -69215259 + MER58A DNA MER1_type 1 224 0 587 313 58 8 chr13 32657988 32658231 -69214938 - MIR SINE MIR 0 262 8 436 317 189 27 chr13 32658680 32659277 -69213892 - L2 LINE L2 -760 2554 1861 191 265 199 51 chr13 32659500 32659696 -69213473 - L2 LINE L2 -1913 1401 1177 309 259 63 116 chr13 32661991 32662180 -69210989 - MER91A DNA MER1_type -15 181 3 197 212 0 0 chr13 32662632 32662665 -69210504 - MER5B DNA MER1_type -142 36 4 705 291 196 16 chr13 32664451 32664829 -69208340 - L2 LINE L2 -42 3271 2826 205 263 144 6 chr13 32665246 32665359 -69207810 - MIR SINE MIR -6 256 54 195 219 0 94 chr13 32665644 32665708 -69207461 + MER5A DNA MER1_type 81 138 -51 251 306 60 45 chr13 32667556 32667690 -69205479 - MER5A DNA MER1_type -37 152 17 355 287 102 30 chr13 32667711 32667878 -69205291 + MIR SINE MIR 41 219 -43 295 265 99 40 chr13 32669161 32669384 -69203785 - L1ME4a LINE L1 0 6121 5886 186 206 0 0 chr13 32670754 32670788 -69202381 - MIR SINE MIR -122 140 107 318 50 0 0 chr13 32671198 32671238 -69201931 + (TG)n Simple_repeat Simple_repeat 2 41 0 620 248 107 20 chr13 32672091 32672319 -69200850 - MIR SINE MIR 0 262 13 396 179 0 0 chr13 32673164 32673242 -69199927 + G-rich Low_complexity Low_complexity 4 81 0 192 200 0 79 chr13 32673945 32674049 -69199120 + MIR SINE MIR 37 179 -83 446 96 110 14 chr13 32674123 32674196 -69198973 - Tigger5 DNA MER2_type 0 2323 2244 316 230 0 14 chr13 32674276 32674350 -69198819 - Tigger5 DNA MER2_type 0 2323 2251 476 290 62 42 chr13 32674369 32674562 -69198607 - MIR SINE MIR -7 255 59 685 256 28 11 chr13 32674624 32674800 -69198369 + MIR SINE MIR 76 254 -8 271 341 83 0 chr13 32677251 32677383 -69195786 - MIR SINE MIR -18 244 102 2179 62 7 4 chr13 32678580 32678856 -69194313 + AluSp SINE Alu 5 281 -32 21 0 0 0 chr13 32679307 32679328 -69193841 + AT_rich Low_complexity Low_complexity 1 21 0 30413 32 20 4 chr13 32679358 32685374 -69187795 - L1PA2 LINE L1 -5 6150 1 189 195 0 0 chr13 32685455 32685496 -69187673 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 233 67 33 chr13 32685920 32686010 -69187159 + L1ME4a LINE L1 5985 6077 -44 304 306 73 8 chr13 32686090 32686214 -69186955 + MIR SINE MIR 126 257 -5 245 253 102 49 chr13 32686418 32686683 -69186486 - L1 LINE L1 -1717 4429 4151 349 339 88 18 chr13 32686692 32686863 -69186306 - L1 LINE L1 -2052 4094 3912 810 90 33 0 chr13 32686872 32686994 -69186175 - THE1C LTR MaLR -55 320 195 284 296 23 8 chr13 32687066 32687198 -69185971 - L1 LINE L1 -2301 3845 3712 285 278 100 22 chr13 32688398 32688538 -69184631 + MIR3 SINE MIR 21 173 -35 2913 9 0 0 chr13 32689301 32689618 -69183551 + AluYb8 SINE Alu 1 317 -1 687 189 8 8 chr13 32690917 32691044 -69182125 + MER5B DNA MER1_type 51 177 -1 386 322 88 79 chr13 32691400 32691480 -69181689 - L2 LINE L2 -1 3271 3193 1540 220 65 52 chr13 32691480 32692034 -69181135 - MER68 LTR ERV1 0 562 2 386 322 88 79 chr13 32692034 32692787 -69180382 - L2 LINE L2 -79 3193 2430 790 137 11 28 chr13 32692870 32693052 -69180117 + CT-rich Low_complexity Low_complexity 1 179 0 279 261 18 63 chr13 32693094 32693205 -69179964 - L2 LINE L2 -979 2335 2230 302 296 12 0 chr13 32694793 32694874 -69178295 + GA-rich Low_complexity Low_complexity 3 84 0 1961 155 0 37 chr13 32694915 32695238 -69177931 - AluJb SINE Alu -1 311 1 690 243 62 8 chr13 32695274 32695517 -69177652 - L1ME LINE L1 -375 5746 5491 2296 104 3 22 chr13 32695746 32696062 -69177107 + AluSx SINE Alu 1 310 -2 413 296 85 45 chr13 32698171 32698394 -69174775 + L2 LINE L2 3041 3272 0 207 260 268 63 chr13 32698879 32699006 -69174163 + MIR SINE MIR 35 187 -75 1503 183 73 24 chr13 32699006 32699295 -69173874 - AluJo SINE Alu -9 303 1 410 345 57 17 chr13 32699812 32699989 -69173180 + MIR SINE MIR 29 212 -50 224 295 0 0 chr13 32700188 32700249 -69172920 + MIR SINE MIR 188 248 -14 248 212 106 83 chr13 32700312 32700444 -69172725 - MIR3 SINE MIR -26 182 48 203 222 0 14 chr13 32701179 32701251 -69171918 + (TATG)n Simple_repeat Simple_repeat 2 72 0 224 328 30 0 chr13 32701924 32701991 -69171178 - L2 LINE L2 0 3272 3204 1503 146 15 58 chr13 32701994 32702402 -69170767 - Tigger3(Golem) DNA MER2_type -1 3028 2 231 385 71 12 chr13 32702494 32702663 -69170506 - L2 LINE L2 -252 3061 2883 362 184 58 11 chr13 32702976 32703063 -69170106 + MIR SINE MIR 172 262 0 236 86 0 0 chr13 32703095 32703130 -69170039 + L1MC4a LINE L1 7171 7205 -603 861 230 127 32 chr13 32703132 32703217 -69169952 + L1MD3 LINE L1 7610 7686 -309 2291 95 3 3 chr13 32703217 32703513 -69169656 - AluSp SINE Alu -17 296 1 861 230 127 32 chr13 32703513 32703766 -69169403 + L1MD3 LINE L1 7686 7980 -15 859 255 63 64 chr13 32703776 32703965 -69169204 + L1ME4a LINE L1 856 1044 -5352 2287 81 3 0 chr13 32703965 32704272 -69168897 + AluSp SINE Alu 1 308 0 859 255 63 64 chr13 32704272 32704780 -69168389 + L1ME4a LINE L1 1044 1553 -4843 * 2972 217 13 28 chr13 32704778 32705608 -69167561 + L1M4 LINE L1 3202 4019 -2127 2646 227 138 10 chr13 32705618 32706513 -69166656 + L1MC4 LINE L1 6614 7623 -419 452 322 95 43 chr13 32706659 32707322 -69165847 + L1ME4a LINE L1 3767 4473 -1742 294 323 16 10 chr13 32707376 32707568 -69165601 + L1ME4a LINE L1 4536 4728 -1487 319 279 65 71 chr13 32707582 32707676 -69165493 + L1ME4a LINE L1 5011 5104 -1111 2468 84 3 0 chr13 32707676 32707984 -69165185 + AluSp SINE Alu 1 309 -4 319 279 65 71 chr13 32707984 32708183 -69164986 + L1ME4a LINE L1 5104 5302 -913 415 286 95 23 chr13 32708232 32708776 -69164393 + L1ME4a LINE L1 5357 5942 -248 5650 116 18 18 chr13 32708798 32710339 -69162830 + L1PA16 LINE L1 4615 6166 0 582 27 27 0 chr13 32710453 32710528 -69162641 + AluY SINE Alu 221 297 -12 330 298 66 39 chr13 32712283 32712538 -69160631 + L1ME4a LINE L1 5157 5420 -755 399 224 119 66 chr13 32712802 32713105 -69160064 + L1ME4a LINE L1 5724 6042 -79 2005 154 3 0 chr13 32714728 32715020 -69158149 + AluSx SINE Alu 1 293 -19 1036 175 6 0 chr13 32715247 32715407 -69157762 - FAM SINE Alu -16 169 9 1241 197 9 5 chr13 32716319 32716542 -69156627 + MER58A DNA MER1_type 1 224 0 385 263 154 40 chr13 32719482 32719657 -69153512 + MIR SINE MIR 11 205 -57 357 24 0 0 chr13 32720000 32720042 -69153127 + (CA)n Simple_repeat Simple_repeat 2 43 0 191 241 157 83 chr13 32720738 32720846 -69152323 + MIR3 SINE MIR 88 203 -5 192 182 0 0 chr13 32720846 32720890 -69152279 + (TCCA)n Simple_repeat Simple_repeat 4 47 0 369 306 252 19 chr13 32721431 32721637 -69151532 + MIR SINE MIR 1 254 -8 686 221 176 25 chr13 32722244 32722443 -69150726 + MIR SINE MIR 2 230 -32 23 0 0 0 chr13 32722773 32722796 -69150373 + AT_rich Low_complexity Low_complexity 1 23 0 1900 109 0 0 chr13 32722796 32723062 -69150107 - L1PA8 LINE L1 0 6172 5907 294 131 83 83 chr13 32723215 32723299 -69149870 + MER112 DNA MER1_type 1 84 -176 596 120 10 0 chr13 32723346 32723446 -69149723 + (CATCC)n Simple_repeat Simple_repeat 4 104 0 385 151 0 0 chr13 32724414 32724487 -69148682 + LTR1B LTR ERV1 1 73 -753 * 1992 107 28 16 chr13 32724477 32724796 -69148373 + MER4A LTR ERV1 342 664 0 316 294 139 15 chr13 32726052 32726253 -69146916 + MIR SINE MIR 21 246 -16 643 234 131 51 chr13 32727052 32727366 -69145803 - L1ME2 LINE L1 -25 6139 5800 4055 203 73 50 chr13 32727467 32727877 -69145292 - L1ME2 LINE L1 -952 5194 4795 1582 206 0 52 chr13 32727877 32728058 -69145111 - AluJo SINE Alu -1 311 153 2294 87 0 10 chr13 32728058 32728356 -69144813 - AluY SINE Alu -16 295 1 1582 206 0 52 chr13 32728356 32728499 -69144670 - AluJo SINE Alu -159 153 4 4055 203 73 50 chr13 32728499 32728603 -69144566 - L1ME2 LINE L1 -1351 4795 4695 2149 150 3 15 chr13 32728603 32728944 -69144225 + MER1B DNA MER1_type 1 337 0 4055 203 73 50 chr13 32728944 32729795 -69143374 - L1ME2 LINE L1 -1451 4695 3797 1991 155 0 16 chr13 32729906 32730216 -69142953 + AluJb SINE Alu 5 309 -3 207 314 229 17 chr13 32731307 32731788 -69141381 + L2 LINE L2 2379 2961 -353 338 333 18 0 chr13 32732101 32732215 -69140954 - MIR SINE MIR -66 142 27 6059 172 76 11 chr13 32734748 32735445 -69137724 + Charlie1a DNA MER1_type 5 656 -2105 252 0 0 0 chr13 32735445 32735473 -69137696 + (TG)n Simple_repeat Simple_repeat 2 29 0 6059 172 76 11 chr13 32735473 32736138 -69137031 + Charlie1a DNA MER1_type 656 1455 0 210 37 0 0 chr13 32737990 32738017 -69135152 + (CA)n Simple_repeat Simple_repeat 1 27 0 216 0 0 0 chr13 32738472 32738496 -69134673 + (A)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr13 32738558 32738579 -69134590 + AT_rich Low_complexity Low_complexity 1 21 0 807 264 31 9 chr13 32738583 32738810 -69134359 + MIR SINE MIR 23 254 -8 201 286 20 0 chr13 32740139 32740188 -69132981 + MIR SINE MIR 66 115 -147 522 300 91 4 chr13 32740234 32740464 -69132705 + MIR SINE MIR 13 262 0 23 54 0 0 chr13 32740775 32740812 -69132357 + AT_rich Low_complexity Low_complexity 1 37 0 3394 237 106 25 chr13 32741276 32742543 -69130626 + L1MEc LINE L1 35 1403 -4993 1752 161 43 0 chr13 32742582 32742861 -69130308 + AluJb SINE Alu 1 291 -21 5755 217 65 50 chr13 32742862 32745728 -69127441 - L1M4 LINE L1 -3609 3035 39 607 256 119 18 chr13 32746129 32746348 -69126821 + MIR SINE MIR 8 248 -14 1940 105 10 66 chr13 32747081 32747432 -69125737 + AluSx SINE Alu 1 312 0 323 304 256 10 chr13 32747529 32747736 -69125433 - MIR SINE MIR 0 262 5 2444 45 0 7 chr13 32748992 32749301 -69123868 + AluY SINE Alu 1 311 0 391 247 70 71 chr13 32749688 32749905 -69123264 + MIR SINE MIR 4 220 -42 23 68 0 0 chr13 32751365 32751409 -69121760 + AT_rich Low_complexity Low_complexity 1 44 0 188 206 0 0 chr13 32751853 32751887 -69121282 + L2 LINE L2 3267 3300 -13 310 284 83 41 chr13 32751981 32752199 -69120970 - L2 LINE L2 -222 3050 2824 446 251 26 77 chr13 32752261 32752456 -69120713 - MIR SINE MIR -10 252 68 21 0 0 0 chr13 32753458 32753479 -69119690 + AT_rich Low_complexity Low_complexity 1 21 0 685 160 131 51 chr13 32754992 32755167 -69118002 + MER5A DNA MER1_type 1 189 0 1745 214 90 28 chr13 32755768 32756379 -69116790 + L1ME3 LINE L1 5492 6140 -22 24 32 0 0 chr13 32757210 32757241 -69115928 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr13 32757681 32757709 -69115460 + GC_rich Low_complexity Low_complexity 1 28 0 2154 116 7 0 chr13 32758248 32758550 -69114619 + AluSx SINE Alu 1 304 -8 1132 184 26 4 chr13 32759038 32759494 -69113675 - MER44D DNA MER2_type 0 605 1 348 221 127 17 chr13 32759614 32759795 -69113374 - L1ME4a LINE L1 -217 5904 5704 5473 86 9 14 chr13 32760023 32760162 -69113007 + L1PA10 LINE L1 5360 5498 -670 2567 64 0 10 chr13 32760162 32760473 -69112696 + AluSp SINE Alu 1 308 -5 5473 86 9 14 chr13 32760473 32761135 -69112034 + L1PA10 LINE L1 5498 6157 -11 711 296 22 9 chr13 32761804 32762034 -69111135 - MIR SINE MIR -14 248 16 230 229 14 57 chr13 32762049 32762119 -69111050 + L2 LINE L2 3202 3268 -4 2019 226 59 6 chr13 32762873 32763416 -69109753 + MER90 LTR ERV1 1 572 -3 2861 7 0 0 chr13 32766035 32766345 -69106824 + AluYa5 SINE Alu 1 310 -1 1475 269 44 29 chr13 32766438 32766914 -69106255 - L2 LINE L2 -16 3297 2815 248 315 27 46 chr13 32767084 32767303 -69105866 + MER112 DNA MER1_type 12 226 -34 2040 164 20 0 chr13 32767972 32768313 -69104856 + MER7A DNA MER2_type 1 346 0 249 219 35 44 chr13 32768427 32768541 -69104628 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 24 0 0 0 chr13 32768650 32768674 -69104495 + AT_rich Low_complexity Low_complexity 1 24 0 216 282 47 12 chr13 32768888 32768973 -69104196 + L3b LINE CR1 1295 1382 -201 23 0 0 0 chr13 32769816 32769839 -69103330 + AT_rich Low_complexity Low_complexity 1 23 0 6851 100 15 5 chr13 32769839 32770983 -69102186 - L1MA2 LINE L1 0 6304 5143 219 328 180 8 chr13 32771523 32771651 -69101518 + MIR3 SINE MIR 16 165 -43 3404 133 25 7 chr13 32772591 32773155 -69100014 - MER50 LTR ERV1 -23 711 138 996 33 0 0 chr13 32774362 32774482 -69098687 + L1PA3 LINE L1 6036 6155 0 205 170 0 106 chr13 32774644 32774691 -69098478 + L2 LINE L2 120 161 -3153 764 240 27 0 chr13 32775955 32776138 -69097031 + MER63A DNA MER1_type 9 196 -14 214 350 15 85 chr13 32776968 32777168 -69096001 + MIR3 SINE MIR 2 187 -21 1131 153 94 30 chr13 32777346 32777549 -69095620 - AluJb SINE Alu -10 302 87 21 0 0 0 chr13 32777643 32777664 -69095505 + AT_rich Low_complexity Low_complexity 1 21 0 287 242 11 22 chr13 32777734 32777825 -69095344 - MLT1K LTR MaLR 0 588 499 206 295 85 31 chr13 32777914 32778043 -69095126 + L2 LINE L2 596 731 -2583 320 235 24 12 chr13 32779431 32779516 -69093653 - L1MC5 LINE L1 -44 7917 7832 22 56 0 0 chr13 32779603 32779639 -69093530 + AT_rich Low_complexity Low_complexity 1 36 0 739 238 71 58 chr13 32779791 32780368 -69092801 - L1MC5 LINE L1 -203 7758 7260 228 314 126 16 chr13 32780478 32780669 -69092500 + L2 LINE L2 3020 3231 -82 4571 160 44 15 chr13 32780669 32781675 -69091494 - L1MC2 LINE L1 -9 6335 5156 320 247 0 59 chr13 32781678 32781763 -69091406 + L2 LINE L2 3225 3304 -9 350 296 86 18 chr13 32782636 32782825 -69090344 + L1M4 LINE L1 5037 5241 -905 819 216 20 106 chr13 32782868 32783036 -69090133 + LTR16A LTR ERVL 207 347 -103 1584 212 6 3 chr13 32783036 32783347 -69089822 - AluJb SINE Alu 0 312 1 819 216 20 106 chr13 32783347 32783432 -69089737 + LTR16A LTR ERVL 347 438 -12 432 319 60 24 chr13 32783444 32784051 -69089118 - L1MC4a LINE L1 -312 5858 5267 416 271 65 57 chr13 32784068 32784315 -69088854 - L1MC4a LINE L1 -905 5241 4993 2047 153 0 3 chr13 32784343 32784643 -69088526 - AluSx SINE Alu -13 299 1 376 316 81 0 chr13 32784777 32784951 -69088218 + L1MEc LINE L1 1624 1811 -4585 2686 129 18 0 chr13 32785293 32785736 -69087433 + L1MB3 LINE L1 5718 6168 -15 1914 149 33 27 chr13 32785840 32786175 -69086994 - MER1B DNA MER1_type -2 337 1 219 316 99 67 chr13 32786206 32786459 -69086710 + L2 LINE L2 2453 2713 -601 366 322 101 66 chr13 32786663 32786980 -69086189 + L2 LINE L2 2945 3272 0 1627 94 31 0 chr13 32787000 32787223 -69085946 + MER30 DNA MER1_type 1 230 0 25 0 0 0 chr13 32787532 32787557 -69085612 + AT_rich Low_complexity Low_complexity 1 25 0 1712 78 0 0 chr13 32787574 32787779 -69085390 - AluSc SINE Alu -25 284 80 1159 186 57 0 chr13 32787779 32787989 -69085180 + MER58A DNA MER1_type 2 223 -1 341 240 192 0 chr13 32788680 32788784 -69084385 + L2 LINE L2 3187 3310 -3 231 36 0 0 chr13 32789155 32789183 -69083986 + (A)n Simple_repeat Simple_repeat 1 28 0 3134 202 16 31 chr13 32790344 32790871 -69082298 + L1ME1 LINE L1 4513 5047 -1119 2444 38 0 56 chr13 32790871 32791191 -69081978 + AluY SINE Alu 1 302 -9 3134 202 16 31 chr13 32791191 32791806 -69081363 + L1ME1 LINE L1 5047 5634 -532 949 242 18 26 chr13 32791806 32792188 -69080981 + MLT2B1 LTR ERVL 1 477 -43 512 130 0 122 chr13 32792308 32792423 -69080746 - MER46A DNA MER2_type -135 101 1 1533 196 60 69 chr13 32792468 32793005 -69080164 + L1ME1 LINE L1 5630 6161 -5 2893 136 6 24 chr13 32793209 32793703 -69079466 + MER31A LTR ERV1 1 485 0 734 250 53 26 chr13 32793839 32794143 -69079026 - L1ME4a LINE L1 -195 5926 5615 302 254 92 34 chr13 32794234 32794488 -69078681 - L1ME4a LINE L1 -521 5600 5329 25 0 0 0 chr13 32794925 32794950 -69078219 + AT_rich Low_complexity Low_complexity 1 25 0 2296 100 3 3 chr13 32794950 32795259 -69077910 - AluSx SINE Alu -3 309 1 283 193 0 0 chr13 32795590 32795647 -69077522 + MER31A LTR ERV1 420 476 -9 2035 244 34 19 chr13 32795647 32796269 -69076900 - L1ME2 LINE L1 -97 6067 5437 543 265 61 10 chr13 32796295 32796491 -69076678 - L1ME2 LINE L1 -52 6046 5841 804 191 74 57 chr13 32796491 32796552 -69076617 - MLT1E3 LTR MaLR 0 624 566 2325 71 0 0 chr13 32796552 32796876 -69076293 - AluY SINE Alu 0 324 1 804 191 74 57 chr13 32796876 32797043 -69076126 - MLT1E3 LTR MaLR -58 566 391 624 178 172 44 chr13 32797085 32797265 -69075904 - MLT1E3 LTR MaLR -368 258 56 1874 213 106 39 chr13 32797307 32798214 -69074955 - L1ME2 LINE L1 -247 5851 4888 2681 219 26 32 chr13 32798250 32799117 -69074052 - L1ME2 LINE L1 -1436 4644 3783 560 254 128 22 chr13 32799122 32799616 -69073553 - L1ME2 LINE L1 -5063 928 454 527 164 0 18 chr13 32799907 32800017 -69073152 + GA-rich Low_complexity Low_complexity 1 108 0 * 763 106 23 8 chr13 32800007 32800139 -69073030 + A-rich Low_complexity Low_complexity 4 137 0 442 299 58 56 chr13 32800212 32800623 -69072546 - L1ME2 LINE L1 -5618 452 41 319 273 85 18 chr13 32800699 32800781 -69072388 - L1ME4a LINE L1 -194 5927 5852 3342 170 8 15 chr13 32800781 32801388 -69071781 - MER6A DNA MER2_type -2 603 1 319 273 85 18 chr13 32801388 32801470 -69071699 - L1ME4a LINE L1 -269 5852 5752 897 155 48 170 chr13 32801562 32801654 -69071515 - MER8 DNA MER2_type -1 238 136 2305 88 17 0 chr13 32801654 32801948 -69071221 - AluSx SINE Alu -13 299 1 897 155 48 170 chr13 32801948 32802126 -69071043 - MER8 DNA MER2_type -103 136 1 180 0 0 0 chr13 32802975 32802995 -69070174 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4827 178 14 10 chr13 32802998 32803033 -69070136 - L1MB2 LINE L1 -16 6155 6122 2316 104 0 0 chr13 32803033 32803332 -69069837 - AluSx SINE Alu -13 299 1 4827 178 14 10 chr13 32803332 32805130 -69068039 - L1MB2 LINE L1 -49 6122 4316 22721 165 25 16 chr13 32805362 32811566 -69061603 - L1PA11 LINE L1 -4 7608 1 286 234 75 11 chr13 32811800 32811894 -69061275 - MIR SINE MIR 0 262 163 226 221 12 35 chr13 32812158 32812244 -69060925 - L1MC4 LINE L1 -41 8001 7918 233 375 0 0 chr13 32812245 32812325 -69060844 + CT-rich Low_complexity Low_complexity 6 85 0 259 317 20 27 chr13 32812325 32812618 -69060551 - L1MC5 LINE L1 -167 7794 7504 2413 121 53 22 chr13 32813088 32813503 -69059666 - MSTA LTR MaLR 0 428 1 337 298 65 16 chr13 32814054 32814178 -69058991 - MIR SINE MIR -101 161 32 225 0 0 0 chr13 32814181 32814206 -69058963 + (TG)n Simple_repeat Simple_repeat 2 26 0 224 162 297 0 chr13 32814326 32814400 -69058769 + L2 LINE L2 2691 2786 -528 1792 235 82 40 chr13 32814402 32815156 -69058013 + L1MC4 LINE L1 7228 8013 -29 245 200 19 43 chr13 32815446 32815569 -69057600 - L1MC/D LINE L1 -738 5426 5374 317 288 52 26 chr13 32815644 32815797 -69057372 - L1MC/D LINE L1 -868 5278 5122 2384 164 34 47 chr13 32815906 32816441 -69056728 - L1MA4 LINE L1 -7 6293 5766 813 116 0 0 chr13 32816441 32816553 -69056616 - AluSg/x SINE Alu -25 285 174 2021 105 0 3 chr13 32816553 32816858 -69056311 - L1MA4 LINE L1 -518 5782 5479 257 50 0 25 chr13 32816858 32816898 -69056271 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 38 39 0 0 chr13 32817432 32817484 -69055685 + AT_rich Low_complexity Low_complexity 1 52 0 31 20 0 20 chr13 32818062 32818088 -69055081 + AT_rich Low_complexity Low_complexity 1 27 -21 2096 149 0 19 chr13 32818088 32818404 -69054765 + AluSx SINE Alu 3 312 0 31 20 0 20 chr13 32818404 32818426 -69054743 + AT_rich Low_complexity Low_complexity 27 48 0 523 254 17 94 chr13 32820210 32820498 -69052671 - MLT1K LTR MaLR -12 576 311 1290 270 71 26 chr13 32820721 32821188 -69051981 + MLT1L LTR MaLR 95 582 -33 257 223 96 57 chr13 32821316 32821473 -69051696 - MLT1K LTR MaLR -342 246 84 21 71 0 0 chr13 32822248 32822290 -69050879 + AT_rich Low_complexity Low_complexity 1 42 0 300 296 90 98 chr13 32823814 32824213 -69048956 - L1M2 LINE L1 -5706 1143 748 195 270 83 64 chr13 32824487 32824691 -69048478 - L3b LINE CR1 -200 1383 1176 208 292 146 21 chr13 32824934 32825030 -69048139 + MIR3 SINE MIR 11 118 -90 986 164 16 11 chr13 32825281 32825470 -69047699 - MER20 DNA MER1_type -2 217 28 338 175 57 153 chr13 32825545 32825661 -69047508 - MER104 DNA Tc2 -1737 161 66 917 188 29 0 chr13 32825661 32825831 -69047338 - FAM SINE Alu 0 175 1 338 175 57 153 chr13 32825831 32825891 -69047278 - MER104 DNA Tc2 -1832 66 2 466 275 50 25 chr13 32827398 32827558 -69045611 + MIR SINE MIR 21 184 -78 245 319 17 16 chr13 32828128 32828243 -69044926 - MIR SINE MIR -68 140 23 1245 205 62 62 chr13 32828371 32828742 -69044427 - MLT1B LTR MaLR -19 371 1 2493 84 0 0 chr13 32830678 32831022 -69042147 - AluY SINE Alu 0 344 1 11129 77 10 4 chr13 32832223 32834528 -69038641 - L1PA7 LINE L1 -5 6149 3828 6699 111 8 1 chr13 32834529 32835592 -69037577 + L1PA7 LINE L1 2746 3815 -2331 226 321 12 12 chr13 32835599 32835680 -69037489 + MIR SINE MIR 57 137 -71 194 152 0 43 chr13 32836225 32836271 -69036898 + T-rich Low_complexity Low_complexity 2 45 0 246 62 0 0 chr13 32836273 32836305 -69036864 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 323 272 33 11 chr13 32836383 32836475 -69036694 - MIR SINE MIR -50 212 119 234 71 119 0 chr13 32836621 32836663 -69036506 - MLT1D LTR MaLR -405 100 54 1207 82 155 43 chr13 32838225 32838432 -69034737 + MER30 DNA MER1_type 1 230 0 316 289 134 24 chr13 32838788 32839199 -69033970 - L1MEd LINE L1 -3021 3108 2653 299 250 10 0 chr13 32839431 32839535 -69033634 - L1MEd LINE L1 -3822 2307 2203 1919 147 0 26 chr13 32839712 32840018 -69033151 - AluJo SINE Alu -14 298 1 255 249 147 40 chr13 32840473 32840650 -69032519 - HAL1 LINE L1 -875 1632 1437 485 277 58 33 chr13 32840695 32841024 -69032145 - L1MEd LINE L1 -4864 1255 919 1283 187 0 0 chr13 32841116 32841320 -69031849 + MER1B DNA MER1_type 5 211 -168 1873 44 0 0 chr13 32841320 32841548 -69031621 + L1PA5 LINE L1 5920 6147 -7 190 286 0 0 chr13 32841953 32842002 -69031167 - L2 LINE L2 0 3313 3265 626 134 30 67 chr13 32842321 32842455 -69030714 + MER1B DNA MER1_type 211 339 0 312 346 73 42 chr13 32842463 32842873 -69030296 - L1MEd LINE L1 -5308 811 389 291 187 132 22 chr13 32842893 32842984 -69030185 - L1MEd LINE L1 -5965 154 54 985 298 146 21 chr13 32843328 32843848 -69029321 - MLT1K LTR MaLR 0 588 4 270 217 0 0 chr13 32845320 32845389 -69027780 + (TG)n Simple_repeat Simple_repeat 2 70 0 263 59 0 0 chr13 32845426 32845460 -69027709 - U2 snRNA snRNA -152 36 3 4366 277 142 23 chr13 32846025 32846365 -69026804 + L2 LINE L2 923 1221 -2092 1655 168 16 6 chr13 32846365 32846686 -69026483 + MER33 DNA MER1_type 1 324 0 4366 277 142 23 chr13 32846686 32848348 -69024821 + L2 LINE L2 1221 3184 -129 723 220 112 70 chr13 32848350 32848821 -69024348 + MLT1D LTR MaLR 1 467 0 375 194 185 9 chr13 32848827 32848935 -69024234 + L2 LINE L2 3182 3308 -5 374 244 47 0 chr13 32852450 32852585 -69020584 - L1MD2 LINE L1 -32 7806 6196 246 32 0 0 chr13 32852627 32852658 -69020511 + (CA)n Simple_repeat Simple_repeat 2 32 0 252 0 0 0 chr13 32852708 32852736 -69020433 + (TG)n Simple_repeat Simple_repeat 2 29 0 290 139 0 0 chr13 32852748 32852791 -69020378 - L1MD2 LINE L1 -249 6110 6068 345 100 0 0 chr13 32853068 32853118 -69020051 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 694 200 0 0 chr13 32854308 32854428 -69018741 + 5S rRNA rRNA 1 120 -1 331 268 0 0 chr13 32854624 32854721 -69018448 + (TA)n Simple_repeat Simple_repeat 2 98 0 2186 125 0 3 chr13 32855325 32855628 -69017541 - AluSx SINE Alu -8 304 3 180 268 0 0 chr13 32856326 32856397 -69016772 + (CA)n Simple_repeat Simple_repeat 1 71 0 280 348 54 9 chr13 32858820 32858932 -69014237 - L2 LINE L2 0 3272 3156 25 0 0 0 chr13 32860288 32860313 -69012856 + AT_rich Low_complexity Low_complexity 1 25 0 440 65 0 0 chr13 32860418 32860480 -69012689 - Alu SINE Alu -8 303 242 948 99 0 0 chr13 32860480 32860601 -69012568 - AluSg/x SINE Alu -36 276 156 769 253 74 0 chr13 32861414 32861616 -69011553 - MER58A DNA MER1_type -1 223 7 501 281 61 64 chr13 32861946 32862671 -69010498 + L1ME4a LINE L1 3728 4447 -1699 2081 126 0 40 chr13 32862671 32862996 -69010173 + AluSx SINE Alu 1 312 0 501 281 61 64 chr13 32862996 32863288 -69009881 + L1ME4a LINE L1 4447 4738 -1408 238 289 101 0 chr13 32863310 32863459 -69009710 + L1P LINE L1 4878 5041 -1105 1071 160 35 113 chr13 32863607 32863951 -69009218 - MER33 DNA MER1_type -1 323 7 802 275 41 34 chr13 32864071 32864634 -69008535 + L1ME4a LINE L1 5410 5979 -142 243 267 20 20 chr13 32864694 32864795 -69008374 + L1MC4a LINE L1 6075 6175 -1633 225 0 0 0 chr13 32865269 32865294 -69007875 + (T)n Simple_repeat Simple_repeat 1 25 0 253 258 8 137 chr13 32867325 32867449 -69005720 + L2 LINE L2 2992 3099 -173 195 300 67 0 chr13 32869420 32869510 -69003659 + L2 LINE L2 3177 3272 0 963 255 83 9 chr13 32870433 32870759 -69002410 - MLT1J2 LTR MaLR 0 450 101 2972 180 9 4 chr13 32870801 32871346 -69001823 + MER44D DNA MER2_type 2 604 -1 233 333 11 0 chr13 32871849 32871942 -69001227 + L2 LINE L2 2765 2858 -456 39 60 0 0 chr13 32872452 32872519 -69000650 + AT_rich Low_complexity Low_complexity 1 67 0 290 242 220 8 chr13 32872614 32872746 -69000423 + MIR SINE MIR 48 207 -55 391 292 102 22 chr13 32872886 32873023 -69000146 + MIR3 SINE MIR 1 148 -60 251 238 107 0 chr13 32873181 32873265 -68999904 - L2 LINE L2 -3 3310 3218 5161 147 37 7 chr13 32873342 32874554 -68998615 + L1PA16 LINE L1 4927 6166 0 248 287 70 17 chr13 32874591 32874706 -68998463 - L2 LINE L2 -188 3125 3005 725 233 72 27 chr13 32874881 32875104 -68998065 + MER69 DNA AcHobo 153 385 -2141 2259 186 122 20 chr13 32875107 32875813 -68997356 + MER69 DNA AcHobo 1749 2526 0 209 211 0 0 chr13 32876537 32876575 -68996594 + MER91 DNA MER1_type 126 163 -27 182 309 15 0 chr13 32876646 32876714 -68996455 + MIR SINE MIR 106 174 -88 216 0 0 0 chr13 32877100 32877124 -68996045 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 2291 102 30 0 chr13 32877189 32877492 -68995677 + AluSx SINE Alu 1 312 0 380 291 36 0 chr13 32877623 32877733 -68995436 + MIR3 SINE MIR 93 206 -2 191 252 58 117 chr13 32878088 32878191 -68994978 - MIR SINE MIR -138 124 28 305 200 0 67 chr13 32880219 32880294 -68992875 - MIR SINE MIR -21 241 172 579 245 67 70 chr13 32880307 32880650 -68992519 + LTR37B LTR ERV1 7 348 -120 395 227 27 36 chr13 32880741 32880851 -68992318 - MIR SINE MIR -144 118 10 252 189 0 19 chr13 32880917 32880970 -68992199 - L2 LINE L2 0 3313 3262 185 320 33 41 chr13 32882671 32882793 -68990376 - MIR SINE MIR -70 138 18 559 306 54 61 chr13 32884114 32884559 -68988610 - LTR16C LTR ERVL -49 442 1 203 324 126 48 chr13 32885128 32885348 -68987821 - L2 LINE L2 -18 3254 3014 1024 192 43 17 chr13 32885910 32886144 -68987025 + Charlie1 DNA MER1_type 1 240 -2521 565 224 17 0 chr13 32886171 32886287 -68986882 + Charlie1 DNA MER1_type 2644 2761 0 320 173 53 13 chr13 32887555 32887630 -68985539 - MER103 DNA DNA -46 120 43 195 227 23 0 chr13 32888310 32888354 -68984815 + L3b LINE CR1 1529 1573 -10 1818 183 136 18 chr13 32889024 32889407 -68983762 + MSTA LTR MaLR 1 428 0 3421 78 48 2 chr13 32889806 32890239 -68982930 - MLT2A2 LTR ERVL 0 453 1 594 289 13 43 chr13 32890251 32890486 -68982683 - MER102a DNA MER1_type 0 330 103 186 43 0 0 chr13 32890494 32890517 -68982652 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 293 324 29 0 chr13 32890594 32890730 -68982439 + L1MEd LINE L1 2 141 -5978 1164 311 118 39 chr13 32890783 32891587 -68981582 + L1MEd LINE L1 217 1084 -5035 254 233 244 0 chr13 32891608 32891694 -68981475 + L1ME LINE L1 47 153 -5917 349 283 0 72 chr13 32891831 32891997 -68981172 + L1ME LINE L1 378 531 -5539 1176 287 69 50 chr13 32892110 32893010 -68980159 + L1ME LINE L1 526 1442 -4819 40049 74 11 7 chr13 32893023 32899137 -68974032 + L1PA6 LINE L1 11 6154 0 477 322 12 31 chr13 32899134 32899392 -68973777 + L1ME LINE L1 1431 1683 -4578 * 326 190 63 0 chr13 32899396 32899475 -68973694 + L1M4 LINE L1 5139 5222 -924 500 309 111 13 chr13 32899873 32899944 -68973225 - L2 LINE L2 -951 2363 2300 2722 16 0 3 chr13 32899944 32900248 -68972921 - AluY SINE Alu -8 303 1 500 309 111 13 chr13 32900248 32900474 -68972695 - L2 LINE L2 -1014 2300 2037 218 385 62 0 chr13 32900621 32900751 -68972418 + MER5A DNA MER1_type 49 186 -3 182 204 0 37 chr13 32900903 32900957 -68972212 + GA-rich Low_complexity Low_complexity 3 54 0 248 303 26 0 chr13 32901628 32901704 -68971465 + L2 LINE L2 3186 3263 -9 229 239 18 37 chr13 32901756 32901865 -68971304 + CT-rich Low_complexity Low_complexity 1 107 0 198 169 28 42 chr13 32901949 32902020 -68971149 + CT-rich Low_complexity Low_complexity 2 71 0 2034 123 0 14 chr13 32902247 32902557 -68970612 + AluSx SINE Alu 9 312 0 593 226 83 29 chr13 32903186 32903374 -68969795 - MIR SINE MIR -61 201 3 401 335 43 6 chr13 32903492 32903656 -68969513 - MIR SINE MIR -37 225 56 441 364 61 23 chr13 32903960 32904221 -68968948 + L2 LINE L2 2553 2823 -491 2478 68 3 10 chr13 32905199 32905510 -68967659 - AluSg1 SINE Alu 0 309 1 228 317 146 8 chr13 32905700 32905823 -68967346 + MLT1I LTR MaLR 81 220 -189 284 281 0 0 chr13 32906564 32906628 -68966541 + MLT1I LTR MaLR 343 406 -3 1946 129 4 4 chr13 32906758 32907038 -68966131 + AluJo SINE Alu 1 280 -32 334 386 0 0 chr13 32908005 32908137 -68965032 - MIR3 SINE MIR 0 208 77 1456 208 74 104 chr13 32908449 32909035 -68964134 + MLT1F1 LTR MaLR 1 567 0 924 165 0 0 chr13 32909248 32909381 -68963788 + FLAM_C SINE Alu 1 133 0 13120 168 95 11 chr13 32910165 32913545 -68959624 + L1PA16 LINE L1 6 3670 -3192 4558 116 73 85 chr13 32913545 32914971 -68958198 + pTR5 LTR ERV1 66 2438 0 11242 185 16 14 chr13 32914971 32915064 -68958105 + L1PA16 LINE L1 3666 3757 -3125 2364 85 0 0 chr13 32915064 32915358 -68957811 + AluY SINE Alu 1 294 -17 11242 185 16 14 chr13 32915358 32916711 -68956458 + L1PA16 LINE L1 3757 5105 -1777 221 0 35 0 chr13 32916711 32916740 -68956429 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 11242 185 16 14 chr13 32916740 32918493 -68954676 + L1PA16 LINE L1 5105 6849 -33 207 139 0 0 chr13 32918634 32918670 -68954499 + (TTC)n Simple_repeat Simple_repeat 3 38 0 228 281 0 0 chr13 32918670 32918727 -68954442 + CT-rich Low_complexity Low_complexity 1 57 0 207 0 0 0 chr13 32919158 32919181 -68953988 + (A)n Simple_repeat Simple_repeat 1 23 0 185 301 159 40 chr13 32919769 32919945 -68953224 + MIR3 SINE MIR 6 202 -6 414 0 0 0 chr13 32920041 32920087 -68953082 + (CA)n Simple_repeat Simple_repeat 1 46 0 229 347 40 0 chr13 32920522 32920597 -68952572 - MIR SINE MIR -132 130 53 338 293 179 14 chr13 32921241 32921381 -68951788 - MIR SINE MIR -21 241 79 4980 165 47 3 chr13 32921849 32922830 -68950339 - L1MB3 LINE L1 -1 6182 5152 831 238 137 4 chr13 32922971 32923219 -68949950 - LTR50 LTR ERVL -5 790 510 1028 183 114 26 chr13 32923259 32923532 -68949637 - LTR50 LTR ERVL -498 297 1 271 236 97 0 chr13 32923577 32923649 -68949520 + L2 LINE L2 3230 3308 -5 643 267 111 9 chr13 32923808 32924025 -68949144 - MIR SINE MIR -12 250 12 228 100 0 0 chr13 32924201 32924241 -68948928 + (CCTG)n Simple_repeat Simple_repeat 2 41 0 252 167 0 0 chr13 32924243 32924291 -68948878 + CT-rich Low_complexity Low_complexity 2 49 0 822 209 117 0 chr13 32924541 32924737 -68948432 + MER58A DNA MER1_type 6 224 0 328 321 10 62 chr13 32925897 32926090 -68947079 - MER5A DNA MER1_type 0 189 7 340 214 12 12 chr13 32926826 32926910 -68946259 + MER117 DNA MER1_type 4 87 -110 485 308 117 71 chr13 32928033 32928399 -68944770 - L2 LINE L2 -4 3268 2876 486 33 0 0 chr13 32928399 32928459 -68944710 + (TG)n Simple_repeat Simple_repeat 2 61 0 485 308 117 71 chr13 32928459 32928568 -68944601 - L2 LINE L2 -396 2876 2773 1263 166 36 5 chr13 32928892 32929115 -68944054 + MER97b DNA MER1_type? 8 237 -816 4950 153 25 29 chr13 32929209 32930079 -68943090 - Tigger1 DNA MER2_type -1551 867 1 1333 267 135 42 chr13 32930081 32930924 -68942245 - L1MDa LINE L1 -2294 3786 2865 * 5688 171 34 8 chr13 32930900 32932522 -68940647 - L1PA13 LINE L1 0 6097 2160 281 274 53 38 chr13 32932540 32932819 -68940350 - L1MDa LINE L1 -4879 1201 947 852 223 13 0 chr13 32933277 32933434 -68939735 - MER45A DNA AcHobo -14 164 6 391 309 123 12 chr13 32933468 32933630 -68939539 + MIR SINE MIR 34 213 -49 716 224 6 38 chr13 32934118 32934301 -68938868 - MER5B DNA MER1_type 0 178 2 191 359 13 0 chr13 32934564 32934642 -68938527 + MIR SINE MIR 184 262 0 2131 114 10 3 chr13 32934794 32935092 -68938077 - AluSg SINE Alu -10 300 1 1738 121 103 60 chr13 32936053 32936575 -68936594 - MER51A LTR ERV1 0 634 1 407 194 0 0 chr13 32937112 32937179 -68935990 + Tigger2 DNA MER2_type 3 69 -2649 * 2249 97 77 6 chr13 32937177 32937527 -68935642 + Tigger2 DNA MER2_type 2280 2654 -64 5669 127 3 11 chr13 32937528 32938400 -68934769 + L1PA15 LINE L1 5299 6163 -2 279 205 13 64 chr13 32938427 32938505 -68934664 + Tigger2 DNA MER2_type 2635 2708 -10 538 219 24 71 chr13 32938874 32939043 -68934126 - MER103 DNA DNA -2 164 4 1920 121 21 38 chr13 32939624 32939964 -68933205 - L1MA4A LINE L1 0 6303 5970 232 326 139 8 chr13 32941290 32941419 -68931750 - MLT1I LTR MaLR -189 220 75 2493 64 3 10 chr13 32941602 32941913 -68931256 + AluSg1 SINE Alu 1 309 0 512 252 86 14 chr13 32943016 32943226 -68929943 - L1M4 LINE L1 -2193 3953 3729 619 239 85 17 chr13 32943558 32943734 -68929435 + MER58A DNA MER1_type 7 194 -30 24 0 0 0 chr13 32944228 32944252 -68928917 + AT_rich Low_complexity Low_complexity 1 24 0 216 326 62 62 chr13 32948319 32948448 -68924721 + L2 LINE L2 3142 3270 -2 235 245 0 0 chr13 32949334 32949387 -68923782 + MER89 LTR ERV1 11 63 -496 3159 126 61 29 chr13 32949416 32949972 -68923197 - MER4B LTR ERV1 -36 574 1 650 307 25 12 chr13 32949975 32950216 -68922953 + MER89 LTR ERV1 197 440 -119 691 271 87 26 chr13 32950378 32950644 -68922525 - MLT1L LTR MaLR -239 376 95 626 236 28 104 chr13 32950867 32951155 -68922014 + MLT1K LTR MaLR 311 576 -12 228 35 0 0 chr13 32952417 32952446 -68920723 + (CA)n Simple_repeat Simple_repeat 1 29 0 345 100 0 0 chr13 32953452 32953502 -68919667 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 6199 112 7 16 chr13 32954876 32955857 -68917312 + L1P LINE L1 1111 2082 -4064 759 297 25 65 chr13 32957103 32957470 -68915699 - LTR16C LTR ERVL -103 388 37 511 253 41 66 chr13 32957521 32957741 -68915428 - MIR SINE MIR -19 243 33 228 35 0 0 chr13 32959109 32959138 -68914031 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 326 62 62 chr13 32960259 32960388 -68912781 + L2 LINE L2 3142 3270 -2 702 309 88 29 chr13 32961323 32961698 -68911471 + MLT1I LTR MaLR 11 407 -2 346 263 27 43 chr13 32962301 32962487 -68910682 - L1ME4a LINE L1 -4 6117 5935 28 0 0 0 chr13 32962500 32962528 -68910641 + AT_rich Low_complexity Low_complexity 1 28 0 1725 209 16 29 chr13 32962529 32962907 -68910262 + MLT1A2 LTR MaLR 1 373 -1 270 0 0 0 chr13 32962907 32962937 -68910232 + (TG)n Simple_repeat Simple_repeat 2 31 0 331 281 83 31 chr13 32963179 32963371 -68909798 + L1ME LINE L1 5616 5817 -304 1146 180 25 0 chr13 32963380 32963580 -68909589 + L1MD2 LINE L1 6148 6352 -7 572 288 11 5 chr13 32964101 32964285 -68908884 - MLT1H LTR MaLR -353 196 12 213 152 0 0 chr13 32964348 32964381 -68908788 + L2 LINE L2 1762 1794 -1520 2043 163 41 27 chr13 32964888 32965432 -68907737 - MLT2A2 LTR ERVL 0 554 1 222 266 64 55 chr13 32965631 32965740 -68907429 + L3b LINE CR1 1272 1381 -202 311 235 92 31 chr13 32966081 32966179 -68906990 + MLT1H LTR MaLR 93 196 -353 22 0 0 0 chr13 32966892 32966914 -68906255 + AT_rich Low_complexity Low_complexity 1 22 0 526 232 168 7 chr13 32968218 32968373 -68904796 - MER5A DNA MER1_type -1 188 9 374 288 16 53 chr13 32969640 32969826 -68903343 - MIR SINE MIR -56 206 27 2546 214 58 25 chr13 32970940 32971546 -68901623 + MLT1E2 LTR MaLR 1 626 0 264 324 0 14 chr13 32972988 32973062 -68900107 + L2 LINE L2 3200 3272 0 318 285 58 36 chr13 32974535 32974672 -68898497 + MIR SINE MIR 117 256 -6 548 324 79 41 chr13 32975671 32975986 -68897183 - L3 LINE CR1 -4 1573 1247 330 286 64 29 chr13 32975997 32976137 -68897032 + Charlie8 DNA MER1_type 46 190 -2227 1364 195 73 0 chr13 32976140 32976386 -68896783 + Tigger7 DNA MER2_type 4 267 -466 531 161 9 89 chr13 32976381 32976493 -68896676 + Tigger7 DNA MER2_type 2385 2487 0 * 393 143 14 0 chr13 32976496 32976566 -68896603 + Charlie8 DNA MER1_type 205 275 -2142 655 223 44 58 chr13 32977161 32977367 -68895802 + MIR SINE MIR 41 243 -19 1333 278 24 49 chr13 32977418 32977885 -68895284 + LTR16C LTR ERVL 37 491 0 327 284 37 28 chr13 32977885 32977994 -68895175 + HERV16 LTR ERVL 1 110 -4886 930 351 44 22 chr13 32978156 32978705 -68894464 + ERVL LTR ERVL 4469 5029 -735 2022 117 78 0 chr13 32978971 32979254 -68893915 - AluSx SINE Alu -7 305 1 1898 164 0 25 chr13 32979798 32980190 -68892979 + AluJo SINE Alu 3 386 0 550 258 0 0 chr13 32980656 32980776 -68892393 - MIR SINE MIR -31 231 112 2351 93 3 3 chr13 32980887 32981198 -68891971 + AluSq SINE Alu 1 311 -2 237 33 0 0 chr13 32981285 32981315 -68891854 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 266 210 16 chr13 32981371 32981495 -68891674 + MIR3 SINE MIR 10 157 -51 405 221 16 33 chr13 32982421 32982437 -68890732 - L1MA10 LINE L1 0 6334 6319 3098 222 86 24 chr13 32982437 32983950 -68889219 - L1ME1 LINE L1 -5 6161 4550 1750 152 30 20 chr13 32983959 32984262 -68888907 - AluJb SINE Alu -6 306 1 460 315 172 31 chr13 32984454 32984901 -68888268 + MLT1H LTR MaLR 40 549 0 30 0 0 0 chr13 32985334 32985364 -68887805 + AT_rich Low_complexity Low_complexity 1 30 0 428 320 121 10 chr13 32986228 32986434 -68886735 + MIR SINE MIR 34 262 0 355 236 19 9 chr13 32986713 32986819 -68886350 + L1MC4 LINE L1 7463 7569 -473 641 134 21 10 chr13 32986841 32986938 -68886231 + FLAM_C SINE Alu 28 125 -18 629 247 91 38 chr13 32986952 32987215 -68885954 + L1MC4 LINE L1 7578 7854 -188 379 205 0 18 chr13 32987471 32987583 -68885586 + (TA)n Simple_repeat Simple_repeat 2 111 0 240 314 93 0 chr13 32987679 32987765 -68885404 - L2 LINE L2 -60 3212 3119 889 198 111 133 chr13 32989360 32989872 -68883297 + LTR28 LTR ERV1 1 1303 -452 288 222 74 37 chr13 32989959 32990067 -68883102 + MARNA DNA Mariner 439 550 -36 1342 227 78 21 chr13 32990100 32990435 -68882734 - MER89 LTR ERV1 -9 550 197 3209 126 59 29 chr13 32990438 32990995 -68882174 + MER4B LTR ERV1 1 574 -36 240 245 0 0 chr13 32991024 32991077 -68882092 - MER89 LTR ERV1 -496 63 11 1364 160 118 43 chr13 32991724 32992212 -68880957 - MER34B LTR ERV1 0 565 2 454 241 12 82 chr13 32993384 32993554 -68879615 - L1MC4 LINE L1 -787 7255 7098 1368 258 86 23 chr13 32993757 32994360 -68878809 - L2 LINE L2 0 3313 2682 234 370 24 8 chr13 32994369 32994496 -68878673 - MIR SINE MIR -88 174 46 1398 157 76 30 chr13 32995248 32995510 -68877659 + AluJo SINE Alu 35 308 -4 399 344 52 10 chr13 32995796 32995988 -68877181 - MIR SINE MIR -35 227 28 356 182 16 107 chr13 32996409 32996530 -68876639 - MER103 DNA DNA -49 117 8 294 282 43 26 chr13 32996617 32996734 -68876435 + L2 LINE L2 3191 3309 -4 293 403 45 0 chr13 32997316 32997450 -68875719 - MIR3 SINE MIR -35 173 34 211 299 11 46 chr13 32997545 32997632 -68875537 - MIR3 SINE MIR -15 193 110 716 151 277 18 chr13 32997664 32997830 -68875339 + MER3 DNA MER1_type 1 209 0 2961 132 79 2 chr13 32998962 32999432 -68873737 + L1PA16 LINE L1 5657 6162 -4 862 248 47 23 chr13 33000902 33001201 -68871968 + L1MC5 LINE L1 7608 7913 -48 189 107 0 0 chr13 33002321 33002349 -68870820 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 186 389 22 17 chr13 33002772 33002919 -68870250 - MIR3 SINE MIR -79 129 12 489 319 56 27 chr13 33003775 33004166 -68869003 + MLT1J LTR MaLR 65 507 -4 394 225 167 25 chr13 33004936 33005109 -68868060 - L1MD3 LINE L1 0 8042 7860 267 300 106 38 chr13 33005734 33005808 -68867361 - MER5B DNA MER1_type -6 172 105 378 0 0 0 chr13 33005808 33005850 -68867319 + (TG)n Simple_repeat Simple_repeat 1 42 0 348 24 0 0 chr13 33005849 33005890 -68867279 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 267 300 106 38 chr13 33005850 33005975 -68867194 - MER5B DNA MER1_type -73 105 2 476 260 23 23 chr13 33006155 33006300 -68866869 - MER5A DNA MER1_type 0 189 34 235 304 72 56 chr13 33006205 33006330 -68866839 + MER5A DNA MER1_type 61 187 -2 * 358 300 18 9 chr13 33007704 33007814 -68865355 + MIR SINE MIR 23 133 -129 184 277 44 109 chr13 33009026 33009163 -68864006 - L2 LINE L2 -22 3291 3164 201 227 227 45 chr13 33009344 33009454 -68863715 + MER5A DNA MER1_type 12 141 -48 604 308 174 20 chr13 33009761 33010118 -68863051 - L3 LINE CR1 -12 1565 1154 1920 121 21 38 chr13 33010713 33011053 -68862116 + L1MA4A LINE L1 5970 6303 0 391 273 99 84 chr13 33011808 33012141 -68861028 + MLT1J LTR MaLR 124 461 -50 1456 169 60 18 chr13 33012152 33012436 -68860733 + AluJo SINE Alu 8 303 -9 1638 267 68 45 chr13 33012474 33013410 -68859759 - L2 LINE L2 -2 3311 2353 191 253 213 67 chr13 33015353 33015503 -68857666 + MIR3 SINE MIR 30 201 -7 349 190 76 38 chr13 33015743 33015822 -68857347 - Charlie3 DNA MER1_type -2623 87 6 * 3573 113 16 19 chr13 33015783 33016295 -68856874 + MER1A DNA MER1_type 20 529 0 2129 154 21 68 chr13 33016295 33016718 -68856451 - MSTB1 LTR MaLR -22 410 8 330 167 0 0 chr13 33016761 33016821 -68856348 + (TA)n Simple_repeat Simple_repeat 2 61 0 337 332 106 42 chr13 33017662 33017879 -68855290 + MIR SINE MIR 21 251 -11 863 276 68 52 chr13 33019074 33019501 -68853668 - LTR16A LTR ERVL 0 450 17 439 319 26 53 chr13 33019642 33019912 -68853257 - ERVL LTR ERVL -381 5383 5124 2732 134 3 0 chr13 33019912 33020286 -68852883 - THE1C LTR MaLR 0 375 1 439 319 26 53 chr13 33020286 33020394 -68852775 - ERVL LTR ERVL -640 5124 5015 2135 142 44 0 chr13 33020475 33020813 -68852356 - THE1B LTR MaLR -10 354 2 425 287 19 0 chr13 33020825 33020933 -68852236 - ERVL LTR ERVL -921 4843 4734 272 297 95 54 chr13 33021372 33021541 -68851628 + MER5A DNA MER1_type 1 186 -3 356 322 8 25 chr13 33022455 33022576 -68850593 - MIR SINE MIR -124 138 20 343 273 45 0 chr13 33022700 33022810 -68850359 + MIR SINE MIR 148 262 0 256 245 0 0 chr13 33023554 33023607 -68849562 + MER5B DNA MER1_type 4 56 -122 2037 150 3 3 chr13 33024133 33024427 -68848742 + AluSx SINE Alu 2 295 -17 73 57 0 0 chr13 33024676 33024798 -68848371 + AT_rich Low_complexity Low_complexity 1 122 0 575 271 92 70 chr13 33024919 33025550 -68847619 + L1MDa LINE L1 1281 1925 -4615 3111 201 48 36 chr13 33025606 33026173 -68846996 + L1ME1 LINE L1 5431 5989 -177 2830 0 3 3 chr13 33026173 33026480 -68846689 + AluYa5 SINE Alu 1 307 -4 1692 188 40 77 chr13 33026488 33026940 -68846229 + MER63B DNA MER1_type 1 435 -1 3111 201 48 36 chr13 33026940 33027085 -68846084 + L1ME1 LINE L1 5995 6161 -5 394 231 242 10 chr13 33027095 33027257 -68845912 + L1MC4a LINE L1 5600 5779 -342 1349 144 35 5 chr13 33027257 33027459 -68845710 + MER6B DNA MER2_type 1 208 -2 394 231 242 10 chr13 33027459 33027489 -68845680 + L1MC4a LINE L1 5779 5801 -320 257 341 38 8 chr13 33027708 33027840 -68845329 - MIR3 SINE MIR -19 189 54 673 216 0 0 chr13 33028115 33028249 -68844920 - L1PB4 LINE L1 0 6156 6023 215 191 172 89 chr13 33031014 33031156 -68842013 - MIR SINE MIR -76 132 21 297 311 121 37 chr13 33031735 33031969 -68841200 - MIR SINE MIR -5 257 5 265 222 16 16 chr13 33036487 33036550 -68836619 + L2 LINE L2 2501 2563 -751 3527 130 4 54 chr13 33036567 33037230 -68835939 + MER41B LTR ERV1 6 554 0 340 241 0 71 chr13 33037251 33037363 -68835806 + L2 LINE L2 2594 2697 -617 1189 136 23 0 chr13 33037402 33037579 -68835590 + L1MA4A LINE L1 6065 6245 -58 1386 115 23 0 chr13 33037404 33037621 -68835548 + L1MA4A LINE L1 6067 6288 -15 2025 144 39 33 chr13 33037626 33037988 -68835181 - THE1B LTR MaLR 0 364 1 2888 173 12 4 chr13 33038206 33038767 -68834402 + L1MB3 LINE L1 5616 6181 -2 204 273 0 0 chr13 33038774 33038818 -68834351 + L2 LINE L2 2736 2779 -535 222 365 26 0 chr13 33038831 33038946 -68834223 - MER5B DNA MER1_type 0 178 61 1790 80 0 0 chr13 33039121 33039359 -68833810 + L1PA8 LINE L1 5931 6168 -4 360 310 26 65 chr13 33039864 33040019 -68833150 - MIR3 SINE MIR -46 162 14 341 324 29 24 chr13 33040294 33040464 -68832705 + L1MC4a LINE L1 5744 5914 -1894 876 297 122 34 chr13 33041204 33041918 -68831251 - L2 LINE L2 0 3313 2530 443 262 133 38 chr13 33041932 33042142 -68831027 + L2 LINE L2 3080 3309 -4 1630 275 96 21 chr13 33042178 33042354 -68830815 - L2 LINE L2 -774 2540 2378 2421 146 59 0 chr13 33042354 33042758 -68830411 + MSTC LTR MaLR 1 428 0 1630 275 96 21 chr13 33042758 33043188 -68829981 - L2 LINE L2 -936 2378 1889 1656 225 34 5 chr13 33043203 33043589 -68829580 - MLT1C LTR MaLR 0 467 71 935 280 69 24 chr13 33043645 33044020 -68829149 - L2 LINE L2 -1471 1843 1452 197 341 34 57 chr13 33044031 33044119 -68829050 - L2 LINE L2 -50 3222 3137 459 0 0 0 chr13 33044696 33044747 -68828422 + (CA)n Simple_repeat Simple_repeat 1 51 0 4075 134 18 5 chr13 33044819 33045490 -68827679 + L1PA16 LINE L1 5485 6164 -2 284 310 103 35 chr13 33046009 33046183 -68826986 + MIR3 SINE MIR 18 203 -5 21 0 0 0 chr13 33047655 33047676 -68825493 + AT_rich Low_complexity Low_complexity 1 21 0 371 162 29 0 chr13 33047835 33047903 -68825266 + AluJ/FRAM SINE Alu 231 300 -2 429 206 130 101 chr13 33048228 33048448 -68824721 + L1MC5 LINE L1 6643 6855 -1106 2525 54 0 3 chr13 33048448 33048746 -68824423 + AluY SINE Alu 1 297 -14 429 206 130 101 chr13 33048746 33049312 -68823857 + L1MC5 LINE L1 6855 7625 -336 277 361 108 0 chr13 33049527 33049657 -68823512 + MIR3 SINE MIR 2 145 -63 570 191 67 49 chr13 33050299 33050512 -68822657 - LTR45B LTR ERV1 0 606 296 233 333 40 0 chr13 33051003 33051078 -68822091 + MIR3 SINE MIR 104 181 -27 3698 124 0 6 chr13 33051696 33052226 -68820943 + MER1A DNA MER1_type 1 527 0 706 181 9 0 chr13 33052866 33052982 -68820187 + FLAM_A SINE Alu 1 117 -16 324 0 0 0 chr13 33052986 33053022 -68820147 + (CA)n Simple_repeat Simple_repeat 2 37 0 2208 131 0 0 chr13 33054246 33054552 -68818617 - AluSx SINE Alu -6 306 1 1003 142 35 104 chr13 33055249 33055537 -68817632 - ORSL DNA AcHobo -2 273 6 1614 172 20 16 chr13 33056917 33057220 -68815949 + AluJo SINE Alu 1 304 -8 5434 56 1 0 chr13 33057281 33057958 -68815211 + L1PA5 LINE L1 5462 6139 -15 180 97 0 0 chr13 33057958 33057989 -68815180 + (TA)n Simple_repeat Simple_repeat 1 31 0 1104 249 25 63 chr13 33058108 33058190 -68814979 - L1MC4a LINE L1 -1919 5889 5805 3551 144 54 2 chr13 33058190 33058816 -68814353 - L1MC1 LINE L1 -5 6328 5670 1104 249 25 63 chr13 33058816 33059130 -68814039 - L1MC4a LINE L1 -2003 5805 5508 330 234 101 8 chr13 33059874 33059985 -68813184 + MLT1E LTR MaLR 1 116 -450 222 37 0 0 chr13 33059990 33060017 -68813152 + (A)n Simple_repeat Simple_repeat 1 27 0 247 254 8 82 chr13 33060021 33060143 -68813026 + MLT1F1 LTR MaLR 128 240 -327 * 518 228 16 16 chr13 33060133 33060260 -68812909 + MLT1F1 LTR MaLR 388 514 -53 2842 169 249 1 chr13 33060270 33060982 -68812187 - L1PB3 LINE L1 -1526 4620 3733 4597 150 40 3 chr13 33060990 33062306 -68810863 + L1PB3 LINE L1 4641 6008 -146 238 326 11 21 chr13 33062517 33062612 -68810557 + MIR SINE MIR 21 114 -148 2133 183 96 92 chr13 33062656 33063445 -68809724 - L1MC5 LINE L1 -78 7883 7106 1511 46 0 0 chr13 33063445 33063644 -68809525 + AluY SINE Alu 106 304 0 2133 183 96 92 chr13 33063644 33063901 -68809268 - L1MC5 LINE L1 -855 7106 6852 510 231 9 0 chr13 33063903 33064011 -68809158 + MER81 DNA DNA 6 114 0 640 217 0 13 chr13 33064013 33064165 -68809004 - L1MC5 LINE L1 -1116 6845 6696 520 264 6 13 chr13 33064167 33064326 -68808843 + MIR SINE MIR 105 262 0 309 300 142 34 chr13 33066342 33066475 -68806694 - L1 LINE L1 -3351 2795 2678 446 0 19 0 chr13 33066475 33066529 -68806640 + (TG)n Simple_repeat Simple_repeat 2 56 0 309 300 142 34 chr13 33066529 33066782 -68806387 - L1 LINE L1 -3468 2678 2367 1606 204 40 3 chr13 33066800 33067152 -68806017 - MLT1A1 LTR MaLR 0 365 1 325 306 47 43 chr13 33067532 33067785 -68805384 - HAL1b LINE L1 -148 2359 709 546 237 180 34 chr13 33067984 33068334 -68804835 - HAL1b LINE L1 -740 608 208 585 232 55 24 chr13 33070045 33070209 -68802960 - MIR SINE MIR -51 211 43 191 355 26 13 chr13 33070283 33070435 -68802734 + L2 LINE L2 1846 1999 -1315 1897 172 0 3 chr13 33071125 33071416 -68801753 - AluJo SINE Alu -22 290 1 1609 179 10 26 chr13 33071546 33071854 -68801315 - AluJo SINE Alu -9 303 1 535 217 20 35 chr13 33071873 33072071 -68801098 + L1MC5 LINE L1 7603 7797 -164 193 315 31 63 chr13 33072353 33072480 -68800689 - MIR SINE MIR -3 259 137 503 311 71 34 chr13 33072763 33073001 -68800168 + MIR SINE MIR 16 262 0 1032 174 64 4 chr13 33073137 33073401 -68799768 - MER33 DNA MER1_type 0 324 45 314 286 105 0 chr13 33073852 33073957 -68799212 - L2 LINE L2 -20 3293 3178 183 270 0 27 chr13 33074132 33074206 -68798963 - L2 LINE L2 -328 2985 2914 217 270 63 0 chr13 33074537 33074600 -68798569 + L2 LINE L2 3239 3305 -8 496 299 55 20 chr13 33075253 33075454 -68797715 - MIR SINE MIR -24 238 31 486 182 161 14 chr13 33075817 33075960 -68797209 + MIR SINE MIR 63 226 -36 266 270 82 66 chr13 33078826 33079022 -68794147 + L1ME LINE L1 5675 5873 -248 22 56 0 0 chr13 33079086 33079122 -68794047 + AT_rich Low_complexity Low_complexity 1 36 0 564 130 0 0 chr13 33079220 33079335 -68793834 + (TA)n Simple_repeat Simple_repeat 2 116 0 3862 133 24 13 chr13 33079336 33079967 -68793202 - L1PA16 LINE L1 -9 6157 5520 2338 110 0 0 chr13 33080347 33080646 -68792523 + AluSg SINE Alu 1 299 -11 2114 128 3 0 chr13 33081277 33081574 -68791595 - AluSc SINE Alu -11 298 1 212 237 176 38 chr13 33081865 33082021 -68791148 - MIR SINE MIR -60 202 22 5120 165 47 48 chr13 33082542 33082810 -68790359 + Ricksha_a DNA DNA 1 268 -2983 1963 163 0 16 chr13 33082810 33083117 -68790052 + AluJo SINE Alu 1 302 -10 5120 165 47 48 chr13 33083117 33084023 -68789146 + Ricksha_a DNA DNA 268 1173 -8 2211 114 0 19 chr13 33084199 33084516 -68788653 + AluSx SINE Alu 1 311 -1 546 211 166 9 chr13 33084712 33084935 -68788234 - L1ME4a LINE L1 -3 6118 5861 224 380 42 0 chr13 33086385 33086527 -68786642 + MIR SINE MIR 110 257 -5 409 271 19 19 chr13 33087722 33087829 -68785340 - MIR SINE MIR -120 142 36 802 276 15 0 chr13 33090865 33091068 -68782101 - MIR SINE MIR -7 255 50 347 249 70 19 chr13 33092823 33093036 -68780133 + L1MC/D LINE L1 5174 5397 -749 589 288 46 14 chr13 33093105 33093324 -68779845 + L1MC/D LINE L1 5555 5780 -2028 292 267 11 0 chr13 33093325 33093415 -68779754 - MER46C DNA MER2_type 0 338 248 237 233 86 52 chr13 33093433 33093549 -68779620 - MER46C DNA MER2_type -218 120 1 2702 125 184 71 chr13 33093676 33094774 -68778395 + Tigger3b DNA MER2_type 7 1231 -1 468 257 235 0 chr13 33095050 33095233 -68777936 - MIR SINE MIR -16 246 21 1001 219 78 14 chr13 33096037 33096060 -68777109 + MIR SINE MIR 25 45 -217 501 257 9 9 chr13 33096060 33096173 -68776996 - MER81 DNA DNA 0 114 2 1001 219 78 14 chr13 33096173 33096368 -68776801 + MIR SINE MIR 45 257 -5 292 163 0 0 chr13 33096617 33096666 -68776503 + L2 LINE L2 3265 3313 0 522 276 129 50 chr13 33097870 33098233 -68774936 - MER115 DNA AcHobo 0 693 302 1519 186 18 87 chr13 33101752 33102144 -68771025 + MLT1A1 LTR MaLR 1 365 0 965 238 70 0 chr13 33102423 33102637 -68770532 + MIR SINE MIR 34 262 0 465 117 0 13 chr13 33102926 33103003 -68770166 - MLT1B LTR MaLR 0 390 315 * 965 232 45 80 chr13 33102999 33103461 -68769708 - MER20B DNA MER1_type -335 448 3 202 167 0 0 chr13 33103512 33103548 -68769621 + L2 LINE L2 3277 3312 -1 1877 158 14 0 chr13 33103694 33103979 -68769190 - AluJo SINE Alu -22 290 2 746 220 36 12 chr13 33104496 33104664 -68768505 + MER5B DNA MER1_type 7 178 0 252 313 268 0 chr13 33104783 33104895 -68768274 - MER5A DNA MER1_type 0 189 48 4384 157 4 11 chr13 33105131 33105882 -68767287 + L1MB5 LINE L1 5421 6166 -8 326 297 122 68 chr13 33107700 33107996 -68765173 - L2 LINE L2 -12 3301 2990 2263 103 0 17 chr13 33108900 33109202 -68763967 + AluSx SINE Alu 1 297 -15 183 42 0 0 chr13 33109740 33109764 -68763405 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 544 335 26 9 chr13 33110209 33110436 -68762733 + MIR SINE MIR 20 250 -12 251 309 138 20 chr13 33110571 33110723 -68762446 + MIR3 SINE MIR 2 171 -37 193 271 119 0 chr13 33110726 33110785 -68762384 + MIR SINE MIR 49 114 -148 293 147 274 11 chr13 33111906 33112001 -68761168 + L2 LINE L2 3192 3311 -2 21 0 0 0 chr13 33112008 33112029 -68761140 + AT_rich Low_complexity Low_complexity 1 21 0 395 261 8 0 chr13 33112245 33112379 -68760790 + (CA)n Simple_repeat Simple_repeat 2 136 0 369 286 0 0 chr13 33112466 33112613 -68760556 + (CATATA)n Simple_repeat Simple_repeat 4 150 0 515 357 0 11 chr13 33112617 33112799 -68760370 + (CA)n Simple_repeat Simple_repeat 1 180 0 1160 269 87 18 chr13 33113644 33114034 -68759135 - L2 LINE L2 -3 3310 2894 612 277 48 68 chr13 33114034 33114326 -68758843 - Charlie8 DNA MER1_type -2131 286 1 2281 82 0 30 chr13 33114485 33114789 -68758380 - AluY SINE Alu -16 295 1 316 296 0 11 chr13 33116855 33116943 -68756226 + MIR SINE MIR 75 161 -101 1070 194 35 112 chr13 33117532 33117908 -68755261 + MLT1A1 LTR MaLR 19 365 0 216 0 0 0 chr13 33118185 33118209 -68754960 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 308 187 49 106 chr13 33118745 33118868 -68754301 + HAL1 LINE L1 902 1017 -1490 359 330 30 15 chr13 33118868 33119132 -68754037 + L1MEc LINE L1 967 1234 -4971 22 35 0 0 chr13 33119159 33119188 -68753981 + AT_rich Low_complexity Low_complexity 1 29 0 1462 295 83 30 chr13 33119283 33120409 -68752760 + L1ME2 LINE L1 580 1764 -4632 * 2636 239 43 20 chr13 33120394 33121423 -68751746 + L1ME2 LINE L1 2472 3523 -2692 2327 223 24 38 chr13 33121417 33122130 -68751039 + L1ME2 LINE L1 5497 6199 -34 * 4092 133 18 28 chr13 33122132 33122876 -68750293 + L1MA8 LINE L1 5552 6287 -4 761 271 69 8 chr13 33122948 33123195 -68749974 + L2 LINE L2 1693 1954 -1360 840 187 7 0 chr13 33123195 33123345 -68749824 + MLT1B LTR MaLR 240 390 0 238 277 21 0 chr13 33123345 33123439 -68749730 + L1MEc LINE L1 4408 4503 -1712 256 295 38 48 chr13 33123457 33123562 -68749607 + L2 LINE L2 3119 3222 -50 520 269 146 56 chr13 33123931 33124363 -68748806 + L2 LINE L2 2843 3313 0 180 176 0 0 chr13 33124661 33124695 -68748474 + (CTGGGG)n Simple_repeat Simple_repeat 1 34 0 350 181 0 0 chr13 33125163 33125235 -68747934 + (TG)n Simple_repeat Simple_repeat 1 72 0 303 288 158 5 chr13 33125631 33125815 -68747354 + L1MEc LINE L1 4891 5102 -1113 318 50 0 0 chr13 33126043 33126083 -68747086 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 311 134 0 chr13 33126095 33126214 -68746955 - MIR SINE MIR -119 143 9 243 345 21 99 chr13 33127595 33127737 -68745432 + L2 LINE L2 3127 3257 -15 216 67 0 0 chr13 33127761 33127791 -68745378 + (CTTG)n Simple_repeat Simple_repeat 2 31 0 185 80 0 0 chr13 33128097 33128122 -68745047 + L3b LINE CR1 1434 1458 -125 636 198 101 128 chr13 33128190 33128558 -68744611 - MLT1J LTR MaLR 0 511 154 415 118 0 24 chr13 33128560 33128645 -68744524 + Tigger2 DNA MER2_type 2467 2549 -169 7875 120 38 25 chr13 33128655 33129992 -68743177 - Tigger2 DNA MER2_type -231 2487 1134 202 270 0 0 chr13 33129992 33130066 -68743103 + T-rich Low_complexity Low_complexity 1 74 0 7197 23 0 0 chr13 33130066 33130938 -68742231 - L1PA3 LINE L1 0 6155 5284 * 8102 28 1 0 chr13 33130937 33131974 -68741195 + L1P LINE L1 2765 3802 -2344 3709 130 58 1 chr13 33131974 33133025 -68740144 - Tigger2 DNA MER2_type -1576 1142 1 192 276 110 76 chr13 33134322 33134467 -68738702 - L2 LINE L2 -1401 1913 1764 194 282 128 0 chr13 33134931 33135009 -68738160 + MIR SINE MIR 175 262 0 217 341 77 40 chr13 33135603 33135876 -68737293 - L2 LINE L2 -8 3305 3023 372 281 43 36 chr13 33136140 33136279 -68736890 - MIR3 SINE MIR -55 153 14 361 167 0 0 chr13 33137429 33137489 -68735680 - MER81 DNA DNA -1 113 54 1260 175 8 4 chr13 33137802 33138048 -68735121 - MLT1D LTR MaLR -258 247 1 266 0 29 0 chr13 33138579 33138613 -68734556 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9818 25 0 0 chr13 33138613 33140535 -68732634 - L1PA4 LINE L1 -8 6147 4226 440 283 157 0 chr13 33143184 33143350 -68729819 + MIR SINE MIR 71 262 0 212 314 58 35 chr13 33144026 33144112 -68729057 - L2 LINE L2 -17 3296 3209 810 229 25 15 chr13 33144449 33144650 -68728519 + MIR SINE MIR 60 262 0 2311 113 0 0 chr13 33144661 33144970 -68728199 - AluSg SINE Alu -1 309 1 188 372 47 12 chr13 33145186 33145236 -68727933 + MIR SINE MIR 60 116 -146 546 206 109 29 chr13 33145236 33145411 -68727758 - MER53 DNA DNA 0 189 1 188 372 47 12 chr13 33145411 33145446 -68727723 + MIR SINE MIR 116 148 -114 350 294 14 7 chr13 33145514 33145657 -68727512 - MER103 DNA DNA -3 163 20 224 328 31 0 chr13 33145704 33145768 -68727401 + L3b LINE CR1 1517 1582 -1 5764 221 57 37 chr13 33146235 33148196 -68724973 + L1M4 LINE L1 2 2135 -4690 2179 131 3 0 chr13 33148196 33148501 -68724668 + AluSp SINE Alu 1 306 -7 5764 221 57 37 chr13 33148501 33148744 -68724425 + L1M4 LINE L1 2135 2372 -4453 273 270 45 27 chr13 33148775 33148886 -68724283 + L1M4c LINE L1 1643 1755 -4629 1308 323 41 28 chr13 33149029 33149643 -68723526 + L1MB7 LINE L1 9 630 -6159 3222 195 61 26 chr13 33149807 33150075 -68723094 + L1MB7 LINE L1 1356 1613 -5176 369 0 0 0 chr13 33150075 33150116 -68723053 + (CA)n Simple_repeat Simple_repeat 2 42 0 3222 195 61 26 chr13 33150116 33150715 -68722454 + L1MB7 LINE L1 1613 2253 -4536 6397 226 28 14 chr13 33150719 33153112 -68720057 + L1MB7 LINE L1 4096 6597 -229 3047 206 72 9 chr13 33153112 33153853 -68719316 - LTR48 LTR ERV1 0 787 1 6397 226 28 14 chr13 33153853 33154067 -68719102 + L1MB7 LINE L1 6597 6807 -19 647 254 127 51 chr13 33154292 33154843 -68718326 - L1ME4a LINE L1 -6 6115 5523 25 0 0 0 chr13 33154938 33154963 -68718206 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 33155323 33155345 -68717824 + AT_rich Low_complexity Low_complexity 1 22 0 261 256 143 37 chr13 33155441 33155762 -68717407 - L1ME4a LINE L1 -1251 4895 4541 228 306 0 25 chr13 33156369 33156384 -68716785 - L1MA10 LINE L1 -2 6332 6318 956 200 19 5 chr13 33156384 33156594 -68716575 - L1ME1 LINE L1 -5 6161 5949 533 270 142 33 chr13 33158555 33158766 -68714403 - MIR SINE MIR -14 248 15 203 245 20 0 chr13 33159464 33159513 -68713656 + C-rich Low_complexity Low_complexity 1 50 0 2424 84 0 0 chr13 33160797 33161108 -68712061 - AluY SINE Alu 0 311 1 203 348 160 14 chr13 33161110 33161258 -68711911 + MIR SINE MIR 45 212 -50 672 311 50 9 chr13 33161589 33161811 -68711358 + MIR SINE MIR 6 236 -26 366 261 69 0 chr13 33162092 33162222 -68710947 + MIR SINE MIR 40 178 -84 295 141 31 0 chr13 33164126 33164190 -68708979 + CT-rich Low_complexity Low_complexity 2 67 0 4796 87 5 0 chr13 33166377 33167024 -68706145 + L1PA10 LINE L1 5519 6168 0 408 295 43 68 chr13 33167959 33168193 -68704976 + MIR SINE MIR 23 250 -12 186 208 0 0 chr13 33169350 33169398 -68703771 + (CA)n Simple_repeat Simple_repeat 1 48 0 1208 223 42 71 chr13 33170027 33170507 -68702662 - LTR37B LTR ERV1 -2 466 1 2618 127 19 0 chr13 33170651 33171076 -68702093 + L1MB2 LINE L1 5730 6162 -9 810 108 24 24 chr13 33171820 33171986 -68701183 + CT-rich Low_complexity Low_complexity 3 168 0 192 125 0 0 chr13 33173932 33173964 -68699205 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1173 233 99 17 chr13 33174174 33174586 -68698583 + L2 LINE L2 1352 1797 -1517 651 112 0 9 chr13 33174587 33174703 -68698466 - Charlie5 DNA MER1_type -27 2585 2471 577 209 68 14 chr13 33174752 33174900 -68698269 + L2 LINE L2 1806 1961 -1353 1960 169 40 31 chr13 33174903 33175443 -68697726 - MLT2A2 LTR ERVL 0 554 3 1451 255 107 27 chr13 33175443 33176003 -68697166 + L2 LINE L2 1961 2565 -749 1607 186 20 14 chr13 33176802 33177098 -68696071 + AluJo SINE Alu 1 298 -14 41704 42 3 1 chr13 33177181 33183306 -68689863 + L1PA4 LINE L1 13 6152 -3 324 308 105 15 chr13 33183384 33183517 -68689652 + L1ME4a LINE L1 5779 5923 -198 261 299 6 45 chr13 33184269 33184446 -68688723 + L1ME LINE L1 5717 5886 -235 274 243 23 0 chr13 33184512 33184593 -68688576 - L1M1 LINE L1 -578 5543 5462 2300 158 70 0 chr13 33184634 33185032 -68688137 + MSTB LTR MaLR 1 426 0 2053 146 24 11 chr13 33185032 33185408 -68687761 + MSTB-int LTR MaLR 1 381 -1270 236 154 0 123 chr13 33185660 33185725 -68687444 - LTR40b LTR ERVL -414 48 1 844 345 92 37 chr13 33185726 33186589 -68686580 + L2 LINE L2 800 1709 -1605 441 324 45 47 chr13 33186609 33187156 -68686013 + L2 LINE L2 2624 3213 -100 273 197 0 0 chr13 33187224 33187290 -68685879 + (TGAA)n Simple_repeat Simple_repeat 4 69 0 368 313 129 11 chr13 33188004 33188202 -68684967 - MIR SINE MIR 0 262 44 186 356 14 0 chr13 33188590 33188663 -68684506 + L2 LINE L2 3194 3267 -5 1777 247 51 39 chr13 33188757 33189162 -68684007 + L1MCc LINE L1 860 1258 -5651 2150 117 0 27 chr13 33189162 33189462 -68683707 + AluSx SINE Alu 8 299 -13 1777 247 51 39 chr13 33189462 33190196 -68682973 + L1MCc LINE L1 1258 2012 -4897 3884 157 41 7 chr13 33190205 33190931 -68682238 + L1MC3 LINE L1 7027 7777 -8 1358 273 63 10 chr13 33190951 33191555 -68681614 + L1MCc LINE L1 2202 2837 -4285 * 2880 192 7 68 chr13 33191554 33192263 -68680906 + L1MA10 LINE L1 5667 6332 -2 1496 225 26 17 chr13 33192275 33192653 -68680516 + L1ME1 LINE L1 5718 6018 -148 3377 101 36 0 chr13 33192653 33193157 -68680012 + L1MA2 LINE L1 5782 6303 -1 1496 225 26 17 chr13 33193157 33193217 -68679952 + L1ME1 LINE L1 6018 6076 -90 204 281 0 18 chr13 33194581 33194638 -68678531 + GA-rich Low_complexity Low_complexity 6 61 0 21 57 0 0 chr13 33194786 33194821 -68678348 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr13 33195469 33195501 -68677668 + AT_rich Low_complexity Low_complexity 1 32 0 227 171 40 40 chr13 33196363 33196439 -68676730 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 * 271 205 60 13 chr13 33196432 33196583 -68676586 + (TA)n Simple_repeat Simple_repeat 2 159 0 1860 220 41 62 chr13 33196583 33197214 -68675955 - L1MC5 LINE L1 -730 7231 6614 474 260 55 17 chr13 33197347 33197528 -68675641 - L1MC5 LINE L1 -2320 5488 5301 800 269 138 38 chr13 33197596 33198275 -68674894 - L1MC5 LINE L1 -913 5233 4487 336 286 66 54 chr13 33198335 33198576 -68674593 - HAL1b LINE L1 -774 574 331 25 0 0 0 chr13 33198901 33198926 -68674243 + AT_rich Low_complexity Low_complexity 1 25 0 256 264 9 123 chr13 33200311 33200417 -68672752 + MIR SINE MIR 168 261 -1 1893 135 0 64 chr13 33200913 33201240 -68671929 + AluSx SINE Alu 1 306 -6 243 304 61 43 chr13 33202016 33202131 -68671038 + L3 LINE CR1 1385 1501 -76 438 137 42 11 chr13 33202158 33202253 -68670916 - L1MC2 LINE L1 0 6344 6247 426 98 0 0 chr13 33202255 33202316 -68670853 - MSTD LTR MaLR 0 457 397 1224 226 78 0 chr13 33202316 33202573 -68670596 - MSTD LTR MaLR -119 277 1 2939 208 6 20 chr13 33202573 33203209 -68669960 - L1MC3 LINE L1 -89 7696 7070 2373 98 35 19 chr13 33204025 33204393 -68668776 + L1PA11 LINE L1 5800 6173 -1 270 0 0 0 chr13 33204664 33204694 -68668475 + (TG)n Simple_repeat Simple_repeat 2 31 0 307 299 104 0 chr13 33204839 33204986 -68668183 - MIR3 SINE MIR -60 148 2 189 0 0 0 chr13 33205111 33205132 -68668037 + (CA)n Simple_repeat Simple_repeat 1 21 0 2200 82 14 0 chr13 33205189 33205492 -68667677 + AluSq SINE Alu 1 307 0 30 27 0 0 chr13 33205565 33205602 -68667567 + AT_rich Low_complexity Low_complexity 1 37 0 512 293 68 20 chr13 33206497 33206746 -68666423 - MIR SINE MIR 0 262 2 7556 25 2 9 chr13 33206930 33208339 -68664830 - L1PA4 LINE L1 0 6155 4766 10525 21 2 6 chr13 33208339 33209584 -68663585 + L1PA4 LINE L1 3524 4762 -1384 27 29 0 0 chr13 33209772 33209806 -68663363 + AT_rich Low_complexity Low_complexity 1 34 0 395 273 142 23 chr13 33209855 33210031 -68663138 - MIR SINE MIR 0 262 66 314 288 12 0 chr13 33210138 33210218 -68662951 + MLT1I LTR MaLR 68 148 -261 350 282 63 28 chr13 33210256 33210398 -68662771 + MLT1J2 LTR MaLR 263 409 -41 210 290 167 56 chr13 33211028 33211352 -68661817 - L2 LINE L2 -565 2749 2390 247 246 8 29 chr13 33214469 33214597 -68658572 + MER5B DNA MER1_type 1 178 0 25 0 0 0 chr13 33214776 33214801 -68658368 + AT_rich Low_complexity Low_complexity 1 25 0 272 256 103 26 chr13 33214801 33214996 -68658173 - L1ME4a LINE L1 -14 6107 5898 578 347 50 0 chr13 33217211 33217453 -68655716 + MIR SINE MIR 1 254 -8 423 247 173 44 chr13 33217505 33217652 -68655517 + L1ME4a LINE L1 5554 5681 -440 4058 157 14 4 chr13 33217652 33218367 -68654802 - L1MD1 LINE L1 -1 6241 5520 423 247 173 44 chr13 33218367 33218583 -68654586 + L1ME4a LINE L1 5681 5964 -157 490 294 77 49 chr13 33218804 33219633 -68653536 - L1ME4a LINE L1 -752 5394 4955 253 226 48 0 chr13 33219862 33219924 -68653245 + L1ME4a LINE L1 5855 5919 -202 31 26 0 0 chr13 33220180 33220218 -68652951 + AT_rich Low_complexity Low_complexity 1 38 0 804 299 30 15 chr13 33220218 33220482 -68652687 - L3 LINE CR1 -17 1560 1293 180 0 0 0 chr13 33220488 33220508 -68652661 + (T)n Simple_repeat Simple_repeat 1 20 0 763 323 18 4 chr13 33220608 33220837 -68652332 - MIR SINE MIR -23 239 8 1323 239 122 19 chr13 33220847 33221215 -68651954 - MLT1H LTR MaLR -141 408 3 225 108 0 0 chr13 33225372 33225409 -68647760 + (TG)n Simple_repeat Simple_repeat 2 38 0 422 320 155 0 chr13 33225698 33225904 -68647265 - MIR SINE MIR -6 256 19 523 261 13 32 chr13 33225913 33226070 -68647099 - MER5A DNA MER1_type 0 189 36 602 238 121 29 chr13 33226624 33226830 -68646339 - MIR SINE MIR -12 250 26 246 305 0 49 chr13 33227943 33228025 -68645144 + MIR SINE MIR 61 138 -124 485 284 56 0 chr13 33228503 33228665 -68644504 - LTR67 LTR ERVL -7 550 380 2318 159 17 26 chr13 33228935 33229364 -68643805 + MSTB LTR MaLR 1 374 -1 1905 171 7 3 chr13 33230175 33230485 -68642684 - AluJo SINE Alu -1 311 1 425 235 35 0 chr13 33230500 33230585 -68642584 - L2 LINE L2 -38 3234 3147 2764 162 17 53 chr13 33231579 33232159 -68641010 - MER89 LTR ERV1 0 559 1 319 309 58 29 chr13 33232826 33232965 -68640204 - MIR SINE MIR -34 228 86 483 238 46 33 chr13 33232969 33233177 -68639992 + LTR1 LTR ERV1 70 425 -565 457 176 28 142 chr13 33233242 33233418 -68639751 + LTR28 LTR ERV1 865 1020 0 3504 178 21 36 chr13 33233418 33234147 -68639022 + L1MA10 LINE L1 5579 6296 -38 717 118 45 0 chr13 33234151 33234261 -68638908 - AluJo SINE Alu -177 135 21 24 0 0 0 chr13 33234950 33234974 -68638195 + AT_rich Low_complexity Low_complexity 1 24 0 417 302 21 30 chr13 33235664 33235905 -68637264 + L2 LINE L2 2756 2992 -321 569 290 159 12 chr13 33236220 33236472 -68636697 + L2 LINE L2 3024 3312 -1 34 24 0 0 chr13 33236510 33236551 -68636618 + AT_rich Low_complexity Low_complexity 1 41 0 234 0 0 0 chr13 33236670 33236696 -68636473 + (TA)n Simple_repeat Simple_repeat 2 27 0 1563 121 12 0 chr13 33237108 33237357 -68635812 - L1MA5A LINE L1 -6 6291 6040 192 343 48 19 chr13 33237466 33237571 -68635598 + MIR SINE MIR 30 137 -71 22 0 0 0 chr13 33238081 33238103 -68635066 + AT_rich Low_complexity Low_complexity 1 22 0 492 195 47 8 chr13 33238264 33238392 -68634777 + L1MB7 LINE L1 6052 6184 0 1300 201 42 50 chr13 33239140 33239423 -68633746 + AluJo SINE Alu 4 284 -18 327 49 0 0 chr13 33239423 33239464 -68633705 + (CA)n Simple_repeat Simple_repeat 2 42 0 1860 168 3 0 chr13 33240600 33240892 -68632277 - AluJb SINE Alu -19 293 1 562 284 119 49 chr13 33241443 33241915 -68631254 + MLT1K LTR MaLR 77 581 -7 2077 152 3 3 chr13 33241931 33242234 -68630935 - AluSx SINE Alu -9 303 1 381 287 0 19 chr13 33242566 33242674 -68630495 + MLT2E LTR ERVL 30 135 -493 297 0 0 0 chr13 33242914 33242947 -68630222 + (CAGC)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr13 33243278 33243307 -68629862 + AT_rich Low_complexity Low_complexity 1 29 0 730 142 0 0 chr13 33248540 33248646 -68624523 + FRAM SINE Alu 41 146 -30 207 0 0 0 chr13 33248650 33248673 -68624496 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 310 256 70 35 chr13 33248921 33249007 -68624162 + MIR SINE MIR 40 128 -134 428 334 13 5 chr13 33249657 33249842 -68623327 + MIR3 SINE MIR 15 200 -8 368 278 35 77 chr13 33250042 33250211 -68622958 + MLT1J LTR MaLR 258 419 -92 581 293 47 16 chr13 33251861 33252052 -68621117 - MIR SINE MIR -38 224 28 2986 167 14 61 chr13 33252070 33252712 -68620457 + LTR9 LTR ERV1 1 612 0 298 273 203 16 chr13 33253906 33254034 -68619135 + MIR SINE MIR 110 261 -1 1742 173 9 35 chr13 33254341 33254687 -68618482 - MER1B DNA MER1_type 0 337 1 211 237 105 26 chr13 33254825 33254901 -68618268 + MIR SINE MIR 181 262 0 231 339 150 0 chr13 33254902 33255029 -68618140 + L3b LINE CR1 1168 1313 -270 502 152 50 0 chr13 33255737 33255836 -68617333 - MER5A DNA MER1_type -77 112 9 192 163 116 0 chr13 33257779 33257822 -68615347 + MIR3 SINE MIR 119 166 -42 * 692 211 60 18 chr13 33257816 33257982 -68615187 - MER5B DNA MER1_type -5 173 1 214 271 17 0 chr13 33257982 33258037 -68615132 + MIR3 SINE MIR 153 208 0 262 229 0 0 chr13 33258558 33258619 -68614550 + T-rich Low_complexity Low_complexity 1 61 0 7295 30 1 1 chr13 33258620 33259522 -68613647 - L1PA3 LINE L1 0 6155 5254 475 29 43 0 chr13 33259533 33259603 -68613566 + L1P LINE L1 3745 3817 -2329 312 206 137 0 chr13 33260085 33260158 -68613011 + MIR SINE MIR 71 153 -109 6204 124 40 22 chr13 33260159 33260352 -68612817 + Tigger1 DNA MER2_type 1 189 -2229 2199 103 7 0 chr13 33260352 33260644 -68612525 - AluSx SINE Alu -18 294 1 6204 124 40 22 chr13 33260644 33260669 -68612500 + Tigger1 DNA MER2_type 189 212 -2206 2232 143 6 3 chr13 33260669 33261011 -68612158 + MER61A LTR ERV1 1 343 0 6204 124 40 22 chr13 33261011 33261871 -68611298 + Tigger1 DNA MER2_type 212 1099 -1319 2046 144 6 54 chr13 33262087 33262441 -68610728 + MER1B DNA MER1_type 1 337 0 1686 187 25 30 chr13 33263007 33263403 -68609766 + MSTD LTR MaLR 3 396 0 353 330 0 0 chr13 33263525 33263625 -68609544 + MIR SINE MIR 157 256 -6 396 289 56 41 chr13 33263758 33263955 -68609214 - MIR3 SINE MIR -1 207 8 309 283 71 0 chr13 33264376 33264475 -68608694 + MIR SINE MIR 65 170 -92 180 111 0 0 chr13 33264525 33264552 -68608617 + (TTG)n Simple_repeat Simple_repeat 3 29 0 372 261 292 5 chr13 33264789 33264984 -68608185 - MIR SINE MIR 0 262 12 327 49 0 0 chr13 33265428 33265469 -68607700 + (TA)n Simple_repeat Simple_repeat 2 42 0 326 298 101 38 chr13 33265694 33265852 -68607317 + MIR3 SINE MIR 30 197 -11 216 255 0 0 chr13 33266080 33266131 -68607038 + CT-rich Low_complexity Low_complexity 3 53 0 28 0 0 0 chr13 33266165 33266193 -68606976 + AT_rich Low_complexity Low_complexity 1 28 0 1597 199 34 0 chr13 33267635 33267931 -68605238 - AluJo SINE Alu -1 311 6 223 294 98 29 chr13 33268127 33268229 -68604940 - MIR SINE MIR -44 218 110 273 119 0 0 chr13 33268366 33268408 -68604761 + (A)n Simple_repeat Simple_repeat 1 42 0 2163 119 7 10 chr13 33268762 33269065 -68604104 + AluSq SINE Alu 1 302 -11 2188 128 0 0 chr13 33269828 33270124 -68603045 + AluSx SINE Alu 1 296 -16 438 294 25 103 chr13 33270679 33271039 -68602130 + L2 LINE L2 2941 3272 0 1546 164 4 4 chr13 33271301 33271551 -68601618 + AluSx SINE Alu 1 250 -62 25 0 0 0 chr13 33271672 33271697 -68601472 + AT_rich Low_complexity Low_complexity 1 25 0 332 279 125 0 chr13 33271715 33271819 -68601350 + L2 LINE L2 3156 3272 0 316 330 213 20 chr13 33272030 33272630 -68600539 - L3 LINE CR1 -102 1475 760 770 176 0 0 chr13 33273485 33273610 -68599559 - FLAM_C SINE Alu -8 125 1 302 278 104 26 chr13 33273999 33274114 -68599055 - L3 LINE CR1 -68 1509 1386 277 0 0 0 chr13 33275282 33275314 -68597855 + L1PA10 LINE L1 6025 6056 -112 2183 101 0 16 chr13 33275511 33275818 -68597351 + AluSx SINE Alu 1 302 -10 2231 95 7 7 chr13 33275821 33276117 -68597052 + AluSg SINE Alu 1 296 -14 2258 89 20 3 chr13 33276118 33276411 -68596758 + AluSq SINE Alu 2 299 -14 2319 78 0 7 chr13 33276523 33276818 -68596351 - AluY SINE Alu -18 293 1 1531 171 100 7 chr13 33276996 33277276 -68595893 + AluJo SINE Alu 1 306 -6 5001 161 109 40 chr13 33277308 33277366 -68595803 - Charlie1a DNA MER1_type -1310 1451 1398 1627 163 27 44 chr13 33277366 33277661 -68595508 + AluJb SINE Alu 21 310 -2 5001 161 109 40 chr13 33277661 33277938 -68595231 - Charlie1a DNA MER1_type -1363 1398 1141 1447 155 33 100 chr13 33277938 33278067 -68595102 + AluJo SINE Alu 1 137 -175 2444 89 0 0 chr13 33278067 33278371 -68594798 + AluSx SINE Alu 1 304 -8 1447 155 33 100 chr13 33278371 33278570 -68594599 + AluJo SINE Alu 137 307 -5 5001 161 109 40 chr13 33278570 33278653 -68594516 - Charlie1a DNA MER1_type -1620 1141 1065 1852 160 0 16 chr13 33278653 33278966 -68594203 - AluJb SINE Alu -4 308 1 5001 161 109 40 chr13 33278966 33279903 -68593266 - Charlie1a DNA MER1_type -1696 1065 1 2240 94 0 50 chr13 33282131 33282450 -68590719 - AluY SINE Alu -8 303 1 639 199 0 57 chr13 33282800 33282941 -68590228 + FLAM_C SINE Alu 1 133 0 363 192 0 0 chr13 33282957 33283030 -68590139 + (TA)n Simple_repeat Simple_repeat 2 74 0 23 0 0 0 chr13 33283684 33283707 -68589462 + AT_rich Low_complexity Low_complexity 1 23 0 513 0 0 0 chr13 33283707 33283764 -68589405 + (TA)n Simple_repeat Simple_repeat 2 58 0 427 189 90 8 chr13 33284822 33284944 -68588225 + MER94 DNA DNA 1 132 -2 22 35 0 0 chr13 33285463 33285492 -68587677 + AT_rich Low_complexity Low_complexity 1 29 0 2247 102 0 0 chr13 33287405 33287690 -68585479 - AluSp SINE Alu -28 285 1 804 67 0 0 chr13 33287745 33287849 -68585320 - AluY SINE Alu 0 311 208 2181 133 0 0 chr13 33288368 33288669 -68584500 + AluSx SINE Alu 1 301 -11 323 130 37 0 chr13 33289323 33289377 -68583792 + AluS SINE Alu 225 280 -21 524 209 0 0 chr13 33289377 33289506 -68583663 + L1MA4 LINE L1 6164 6292 -8 192 40 0 0 chr13 33289548 33289573 -68583596 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2116 93 0 7 chr13 33289573 33289852 -68583317 - AluSc SINE Alu -32 277 1 25 0 0 0 chr13 33289897 33289922 -68583247 + AT_rich Low_complexity Low_complexity 1 25 0 1627 131 10 86 chr13 33289936 33290226 -68582943 - AluJo SINE Alu -44 268 1 2160 128 0 3 chr13 33290415 33290712 -68582457 - AluSx SINE Alu -16 296 1 565 125 104 0 chr13 33291265 33291361 -68581808 + FLAM_C SINE Alu 6 111 -32 1982 123 20 13 chr13 33291466 33291768 -68581401 + AluSx SINE Alu 1 304 -8 1736 174 7 3 chr13 33292271 33292559 -68580610 - AluJo SINE Alu -17 295 7 2056 125 10 0 chr13 33292885 33293180 -68579989 + AluSq SINE Alu 1 298 -15 431 324 115 42 chr13 33294712 33294881 -68578288 + L2 LINE L2 2210 2365 -949 2113 118 14 0 chr13 33294881 33295178 -68577991 - AluSx SINE Alu -11 301 1 431 324 115 42 chr13 33295178 33295418 -68577751 + L2 LINE L2 2365 2649 -665 207 374 0 24 chr13 33297040 33297123 -68576046 - L2 LINE L2 -7 3265 3185 2434 179 50 44 chr13 33298734 33299254 -68573915 - MER44D DNA MER2_type -1 604 27 22 0 0 0 chr13 33299439 33299461 -68573708 + AT_rich Low_complexity Low_complexity 1 22 0 2089 104 6 22 chr13 33299464 33299600 -68573569 + AluSx SINE Alu 1 138 -174 2324 78 0 53 chr13 33299600 33299920 -68573249 + AluY SINE Alu 1 303 -8 2089 104 6 22 chr13 33299920 33300100 -68573069 + AluSx SINE Alu 138 312 0 2188 107 10 0 chr13 33301587 33301887 -68571282 + AluSg SINE Alu 1 303 -7 2178 107 3 0 chr13 33303062 33303360 -68569809 - AluSq SINE Alu -14 299 1 298 278 0 0 chr13 33303705 33303795 -68569374 + L1MC4 LINE L1 6614 6703 -1339 201 182 0 0 chr13 33303795 33303828 -68569341 + (TA)n Simple_repeat Simple_repeat 1 33 0 2063 137 0 0 chr13 33303828 33304120 -68569049 - AluSx SINE Alu -20 292 1 580 301 118 18 chr13 33304761 33304990 -68568179 + MIR SINE MIR 11 262 0 180 0 0 0 chr13 33305514 33305534 -68567635 + (CA)n Simple_repeat Simple_repeat 2 21 0 2018 85 14 11 chr13 33305938 33306220 -68566949 - AluSg SINE Alu -27 283 1 270 302 274 16 chr13 33306343 33306598 -68566571 - L3 LINE CR1 -155 1422 1102 1485 173 40 10 chr13 33306956 33307256 -68565913 + AluJo SINE Alu 1 309 -3 1904 87 112 0 chr13 33307595 33307871 -68565298 - AluSx SINE Alu -5 307 1 2028 129 0 10 chr13 33308234 33308537 -68564632 - AluSx SINE Alu -10 302 3 23 33 0 0 chr13 33308998 33309028 -68564141 + AT_rich Low_complexity Low_complexity 1 30 0 2001 121 17 0 chr13 33310561 33310851 -68562318 + AluSg SINE Alu 3 297 -13 1936 110 7 17 chr13 33311268 33311559 -68561610 + AluSg SINE Alu 1 288 -22 1196 263 33 82 chr13 33311606 33312092 -68561077 + L2 LINE L2 2804 3265 -48 24 0 0 0 chr13 33313421 33313445 -68559724 + AT_rich Low_complexity Low_complexity 1 24 0 2007 120 7 0 chr13 33314772 33315071 -68558098 - AluSx SINE Alu -11 301 1 237 267 0 0 chr13 33315081 33315126 -68558043 + C-rich Low_complexity Low_complexity 5 49 0 1985 101 0 0 chr13 33315129 33315386 -68557783 - AluSg SINE Alu -53 257 1 1491 116 148 12 chr13 33315680 33315930 -68557239 - AluSx SINE Alu -28 284 1 688 157 26 0 chr13 33315955 33316070 -68557099 + FLAM_C SINE Alu 1 118 -25 25 51 0 0 chr13 33316070 33316109 -68557060 + AT_rich Low_complexity Low_complexity 1 39 0 2143 108 0 3 chr13 33316109 33316404 -68556765 - AluSq SINE Alu -19 294 1 2211 71 44 3 chr13 33316408 33316703 -68556466 - AluY SINE Alu -4 307 1 45 34 0 0 chr13 33316709 33316768 -68556401 + AT_rich Low_complexity Low_complexity 1 59 0 21 95 0 0 chr13 33318343 33318406 -68554763 + AT_rich Low_complexity Low_complexity 1 63 0 21 57 0 0 chr13 33318463 33318498 -68554671 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 33319089 33319120 -68554049 + AT_rich Low_complexity Low_complexity 1 31 0 1475 179 14 21 chr13 33319277 33319557 -68553612 - AluJo SINE Alu -34 278 1 925 92 8 15 chr13 33319564 33319694 -68553475 - AluSq/x SINE Alu -180 133 5 333 226 65 65 chr13 33319884 33319977 -68553192 - L2 LINE L2 -6 3307 3215 9845 126 81 13 chr13 33319981 33320176 -68552993 + Tigger2 DNA MER2_type 944 1124 -1594 2457 70 0 0 chr13 33320176 33320477 -68552692 - AluY SINE Alu -10 301 1 9845 126 81 13 chr13 33320477 33321942 -68551227 + Tigger2 DNA MER2_type 1124 2718 0 4507 183 75 20 chr13 33321944 33322906 -68550263 - L1MB3 LINE L1 0 6183 5275 1840 118 54 4 chr13 33322906 33323185 -68549984 - AluSg SINE Alu -17 293 1 4507 183 75 20 chr13 33323185 33324127 -68549042 - L1MB3 LINE L1 -908 5275 4190 647 257 231 21 chr13 33324179 33324517 -68548652 + L2 LINE L2 1284 1692 -1622 22 0 0 0 chr13 33324677 33324699 -68548470 + AT_rich Low_complexity Low_complexity 1 22 0 1850 155 0 20 chr13 33325366 33325669 -68547500 - AluJb SINE Alu -14 298 2 1473 129 40 114 chr13 33326563 33326705 -68546464 + AluJo SINE Alu 1 107 -205 1546 77 0 61 chr13 33326705 33326778 -68546391 - L1PA13 LINE L1 -5 6158 6082 2153 118 0 6 chr13 33326778 33327091 -68546078 - AluSx SINE Alu -1 311 1 1546 77 0 61 chr13 33327091 33327264 -68545905 - L1PA13 LINE L1 -81 6082 5927 1473 129 40 114 chr13 33327264 33327446 -68545723 + AluJo SINE Alu 107 301 -11 545 272 97 106 chr13 33328600 33328920 -68544249 + L3 LINE CR1 907 1223 -354 4552 158 60 10 chr13 33328971 33329794 -68543375 + MER6 DNA MER2_type 2 865 0 23 54 0 0 chr13 33329915 33329952 -68543217 + AT_rich Low_complexity Low_complexity 1 37 0 2144 128 0 0 chr13 33330154 33330451 -68542718 - AluSx SINE Alu -15 297 1 1999 119 11 3 chr13 33330467 33330753 -68542416 - AluSq SINE Alu -25 288 1 1327 117 0 0 chr13 33330922 33331101 -68542068 - AluSg/x SINE Alu -6 304 126 450 0 0 0 chr13 33331101 33331151 -68542018 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2042 121 0 0 chr13 33331151 33331433 -68541736 - AluSg SINE Alu -28 282 1 2183 96 0 32 chr13 33333380 33333694 -68539475 + AluSp SINE Alu 1 304 -9 659 104 58 0 chr13 33333727 33334074 -68539095 + (TA)n Simple_repeat Simple_repeat 1 367 0 1394 83 0 0 chr13 33334089 33334270 -68538899 - AluY SINE Alu 0 311 131 187 286 18 0 chr13 33335701 33335757 -68537412 + MER5A DNA MER1_type 50 106 -83 504 228 0 0 chr13 33335794 33335886 -68537283 + L2 LINE L2 3221 3312 -1 2487 30 3 3 chr13 33335958 33336255 -68536914 - AluY SINE Alu -14 297 1 966 161 0 25 chr13 33336941 33337102 -68536067 - FRAM SINE Alu -20 156 1 257 281 76 41 chr13 33338029 33338269 -68534900 - L1ME LINE L1 -364 5798 5533 22 0 0 0 chr13 33338745 33338767 -68534402 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr13 33339253 33339280 -68533889 + (A)n Simple_repeat Simple_repeat 1 27 0 192 77 0 0 chr13 33340285 33340311 -68532858 + (CTG)n Simple_repeat Simple_repeat 2 27 0 28 29 0 0 chr13 33340412 33340447 -68532722 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 33341293 33341322 -68531847 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr13 33341807 33341861 -68531308 + AT_rich Low_complexity Low_complexity 1 54 0 1294 109 0 0 chr13 33344736 33344910 -68528259 - AluSq SINE Alu -6 307 134 32 75 0 0 chr13 33345804 33345871 -68527298 + AT_rich Low_complexity Low_complexity 1 67 0 32 75 0 0 chr13 33346626 33346693 -68526476 + AT_rich Low_complexity Low_complexity 1 67 0 23 86 0 0 chr13 33347288 33347346 -68525823 + AT_rich Low_complexity Low_complexity 1 58 0 214 246 0 0 chr13 33347492 33347553 -68525616 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 611 254 57 24 chr13 33351931 33352140 -68521029 - MIR SINE MIR -43 219 4 654 234 86 54 chr13 33352448 33352670 -68520499 - MIR SINE MIR -2 260 32 2500 45 0 0 chr13 33352716 33353004 -68520165 - AluSc SINE Alu -14 295 8 695 225 177 10 chr13 33353237 33353446 -68519723 + MIR SINE MIR 18 261 -1 2093 85 60 0 chr13 33353529 33353811 -68519358 - AluSg SINE Alu -10 300 2 393 261 52 0 chr13 33354282 33354397 -68518772 - MIR SINE MIR -10 252 132 2544 52 0 3 chr13 33355153 33355459 -68517710 + AluY SINE Alu 1 305 -6 715 195 16 0 chr13 33355896 33356024 -68517145 - FLAM_A SINE Alu -3 130 1 1651 177 97 89 chr13 33356178 33356674 -68516495 + MLT1D LTR MaLR 4 503 -2 198 0 0 0 chr13 33356731 33356753 -68516416 + (TG)n Simple_repeat Simple_repeat 2 23 0 1224 162 18 9 chr13 33356780 33357009 -68516160 - AluJb SINE Alu 0 312 82 1815 128 64 0 chr13 33357802 33358083 -68515086 - AluSx SINE Alu -13 299 1 407 329 57 73 chr13 33358309 33358625 -68514544 - L3 LINE CR1 -213 1364 1054 1815 141 0 53 chr13 33359813 33360117 -68513052 - AluSx SINE Alu -24 288 1 639 310 113 68 chr13 33361081 33361206 -68511963 - L2 LINE L2 -809 2505 2387 189 0 0 0 chr13 33361206 33361227 -68511942 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 474 75 0 0 chr13 33361226 33361293 -68511876 + (TG)n Simple_repeat Simple_repeat 1 67 0 639 310 113 68 chr13 33361227 33361829 -68511340 - L2 LINE L2 -927 2387 1814 2363 104 3 0 chr13 33362041 33362350 -68510819 + AluSp SINE Alu 1 310 -3 225 220 68 0 chr13 33363649 33363708 -68509461 - L1ME LINE L1 -328 5793 5731 2201 103 7 0 chr13 33363750 33364040 -68509129 - AluSq SINE Alu -19 294 3 1134 74 0 0 chr13 33364041 33364176 -68508993 - AluSq/x SINE Alu -176 136 2 571 164 60 0 chr13 33364615 33364731 -68508438 - L1MB3 LINE L1 -7 6176 6054 2247 95 3 0 chr13 33365001 33365286 -68507883 - AluSx SINE Alu -26 286 1 2277 75 7 3 chr13 33365620 33365914 -68507255 - AluSc SINE Alu -14 295 1 255 281 16 0 chr13 33366133 33366197 -68506972 + CT-rich Low_complexity Low_complexity 3 67 0 241 304 183 9 chr13 33367321 33367436 -68505733 - MIR SINE MIR -120 142 8 1010 247 179 17 chr13 33367754 33368660 -68504509 + L1MEc LINE L1 626 1691 -4705 992 204 120 4 chr13 33368666 33368941 -68504228 + L1MEc LINE L1 2017 2323 -4073 2105 126 3 16 chr13 33369558 33369868 -68503301 + AluJb SINE Alu 3 308 -4 5306 220 56 80 chr13 33369894 33369941 -68503228 + L1MEc LINE L1 2272 2319 -3896 1995 137 40 0 chr13 33369941 33370241 -68502928 + AluSx SINE Alu 1 312 0 5306 220 56 80 chr13 33370241 33370288 -68502881 + L1MEc LINE L1 2319 2366 -3849 1918 125 25 75 chr13 33370288 33370609 -68502560 + AluJb SINE Alu 3 307 -5 5306 220 56 80 chr13 33370609 33370972 -68502197 + L1MEc LINE L1 2366 2736 -3479 825 129 204 30 chr13 33370972 33371173 -68501996 + MER46A DNA MER2_type 1 236 0 5306 220 56 80 chr13 33371173 33371239 -68501930 + L1MEc LINE L1 2736 2802 -3413 814 215 126 0 chr13 33371239 33371430 -68501739 + MER58C DNA MER1_type 1 215 0 5306 220 56 80 chr13 33371430 33372144 -68501025 + L1MEc LINE L1 2802 3531 -2684 1974 141 36 10 chr13 33372144 33372448 -68500721 + AluJb SINE Alu 1 312 0 5306 220 56 80 chr13 33372448 33373252 -68499917 + L1MEc LINE L1 3531 4269 -1946 524 221 18 55 chr13 33373259 33373422 -68499747 - L1ME1 LINE L1 -124 6042 5886 1582 141 102 18 chr13 33373513 33373796 -68499373 - AluJo SINE Alu -3 309 3 185 238 0 0 chr13 33373804 33373846 -68499323 + L2 LINE L2 2216 2257 -1057 477 139 89 0 chr13 33374871 33374950 -68498219 + L2 LINE L2 3228 3313 0 2266 88 14 3 chr13 33375014 33375311 -68497858 + AluSq SINE Alu 1 300 -13 535 269 87 0 chr13 33376960 33377109 -68496060 + MLT1J2 LTR MaLR 3 164 -286 281 269 29 19 chr13 33377819 33377923 -68495246 + MIR3 SINE MIR 103 207 -1 2131 98 3 17 chr13 33377963 33378258 -68494911 - AluSc SINE Alu -18 291 1 2035 108 0 46 chr13 33378265 33378588 -68494581 - AluSp SINE Alu -5 308 1 916 201 12 0 chr13 33378801 33378970 -68494199 - AluJb SINE Alu -10 302 132 557 263 27 0 chr13 33379682 33379868 -68493301 + L1ME4a LINE L1 5716 5906 -215 273 172 62 16 chr13 33379890 33379954 -68493215 + L1ME4a LINE L1 5969 6035 -86 1787 171 0 13 chr13 33380418 33380723 -68492446 + AluJb SINE Alu 1 301 -11 366 333 29 0 chr13 33381217 33381322 -68491847 - MIR3 SINE MIR -16 192 85 228 174 286 41 chr13 33382009 33382107 -68491062 + L1ME4a LINE L1 5598 5719 -402 313 245 39 90 chr13 33382259 33382414 -68490755 + L1ME4a LINE L1 5968 6114 -7 2142 126 0 10 chr13 33382786 33383095 -68490074 - AluSx SINE Alu -6 306 1 419 257 57 0 chr13 33383222 33383327 -68489842 + MIR SINE MIR 151 261 -1 819 206 7 7 chr13 33383429 33383584 -68489585 + FRAM SINE Alu 1 155 -11 1114 268 342 12 chr13 33383893 33384811 -68488358 + L2 LINE L2 1259 2479 -835 809 274 131 8 chr13 33384811 33385056 -68488113 + LTR50 LTR ERVL 5 279 -516 554 275 80 13 chr13 33385113 33385362 -68487807 + LTR50 LTR ERVL 271 483 -40 862 252 215 27 chr13 33385362 33385892 -68487277 + L2 LINE L2 2679 3313 0 1227 267 143 19 chr13 33385943 33386591 -68486578 + HAL1b LINE L1 86 814 -534 653 249 188 12 chr13 33386596 33386818 -68486351 + HAL1b LINE L1 870 1052 -296 2365 62 3 32 chr13 33386818 33387127 -68486042 + AluY SINE Alu 1 300 -11 653 249 188 12 chr13 33387127 33387309 -68485860 + HAL1b LINE L1 1052 1345 -3 577 76 9 57 chr13 33387339 33387444 -68485725 + L1MB2 LINE L1 6070 6169 -2 26 50 0 0 chr13 33387444 33387484 -68485685 + AT_rich Low_complexity Low_complexity 1 40 0 354 269 65 0 chr13 33388109 33388217 -68484952 - L1ME LINE L1 -411 5710 5596 2311 88 0 10 chr13 33388246 33388553 -68484616 - AluSg SINE Alu -4 306 3 2665 16 7 3 chr13 33388792 33389097 -68484072 - AluY SINE Alu -5 306 1 23 0 0 0 chr13 33390359 33390382 -68482787 + AT_rich Low_complexity Low_complexity 1 23 0 1015 233 268 20 chr13 33390806 33390978 -68482191 + MLT1G LTR MaLR 1 129 -461 2085 109 0 4 chr13 33390978 33391253 -68481916 + AluSc SINE Alu 3 276 -33 1015 233 268 20 chr13 33391253 33391531 -68481638 + MLT1G LTR MaLR 129 563 -27 215 265 148 43 chr13 33392067 33392229 -68480940 + L2 LINE L2 2056 2234 -1080 257 287 21 35 chr13 33394202 33394345 -68478824 + C-rich Low_complexity Low_complexity 4 144 0 36 53 0 0 chr13 33395073 33395130 -68478039 + GC_rich Low_complexity Low_complexity 1 57 0 333 0 0 0 chr13 33400847 33400884 -68472285 + (TG)n Simple_repeat Simple_repeat 2 38 0 315 0 0 0 chr13 33401596 33401631 -68471538 + (CA)n Simple_repeat Simple_repeat 2 36 0 307 277 208 0 chr13 33404336 33404437 -68468732 - L2 LINE L2 -2 3270 3149 194 213 131 0 chr13 33404931 33404992 -68468177 - L2 LINE L2 -67 3205 3137 486 243 105 12 chr13 33405527 33405699 -68467470 - MIR SINE MIR -43 219 21 371 301 0 0 chr13 33406233 33406326 -68466843 - L2 LINE L2 -8 3264 3172 388 248 99 0 chr13 33406459 33406580 -68466589 - MIR SINE MIR -127 135 3 1599 146 59 4 chr13 33407093 33407347 -68465822 - AluJo SINE Alu -44 268 1 1240 162 4 51 chr13 33407731 33407966 -68465203 + AluJb SINE Alu 72 295 -17 22 0 0 0 chr13 33408585 33408607 -68464562 + AT_rich Low_complexity Low_complexity 1 22 0 459 248 69 7 chr13 33408609 33408754 -68464415 - L1ME4a LINE L1 -7 6114 5961 262 245 50 29 chr13 33408786 33408920 -68464249 - L1ME4a LINE L1 -226 5895 5758 206 95 24 0 chr13 33408920 33408962 -68464207 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 245 98 0 0 chr13 33408966 33409007 -68464162 - L1PA3 LINE L1 0 6155 6115 304 57 0 75 chr13 33409136 33409189 -68463980 - L1MA3 LINE L1 0 6305 6257 1973 130 7 10 chr13 33409201 33409493 -68463676 - AluJb SINE Alu -19 293 3 318 80 0 0 chr13 33410266 33410316 -68462853 + (CA)n Simple_repeat Simple_repeat 2 51 0 1689 148 21 28 chr13 33412151 33412286 -68460883 + AluJo SINE Alu 1 135 -177 2227 103 0 7 chr13 33412286 33412622 -68460547 + AluY SINE Alu 1 311 0 1689 148 21 28 chr13 33412622 33412770 -68460399 + AluJo SINE Alu 135 282 -30 207 0 0 0 chr13 33412774 33412797 -68460372 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2330 97 7 0 chr13 33413337 33413635 -68459534 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr13 33414159 33414179 -68458990 + (T)n Simple_repeat Simple_repeat 1 20 0 311 252 56 47 chr13 33414624 33414731 -68458438 + MIR SINE MIR 20 127 -81 340 208 159 76 chr13 33414987 33415197 -68457972 - L1ME4a LINE L1 -1 6120 5878 2204 135 0 0 chr13 33415197 33415509 -68457660 - AluSx SINE Alu 0 312 1 340 208 159 76 chr13 33415509 33415587 -68457582 - L1ME4a LINE L1 -243 5878 5808 28 86 0 0 chr13 33415587 33415657 -68457512 + AT_rich Low_complexity Low_complexity 1 70 0 218 276 19 29 chr13 33415779 33415884 -68457285 + (TATG)n Simple_repeat Simple_repeat 4 107 0 2181 113 7 10 chr13 33416047 33416348 -68456821 - AluSg SINE Alu -10 300 1 524 271 117 12 chr13 33416359 33416599 -68456570 - L1ME4a LINE L1 -346 5775 5511 200 152 0 152 chr13 33417700 33417766 -68455403 - L2 LINE L2 -1 3312 3257 333 212 25 8 chr13 33418490 33418608 -68454561 + CT-rich Low_complexity Low_complexity 2 121 0 1354 262 52 14 chr13 33419378 33419798 -68453371 + L3b LINE CR1 1121 1556 -27 1300 197 16 29 chr13 33420570 33420621 -68452548 - L1MB2 LINE L1 0 6171 6121 1911 147 0 19 chr13 33420621 33420928 -68452241 - AluJo SINE Alu -11 301 1 1300 197 16 29 chr13 33420928 33421191 -68451978 - L1MB2 LINE L1 -50 6121 5861 2293 151 7 6 chr13 33421193 33421655 -68451514 - L1MB2 LINE L1 -546 5625 5161 297 0 0 0 chr13 33421783 33421816 -68451353 + (CA)n Simple_repeat Simple_repeat 2 34 0 241 215 115 62 chr13 33423909 33424039 -68449130 - HAL1b LINE L1 -7 1341 1205 789 276 78 63 chr13 33424039 33424782 -68448387 - L1ME4a LINE L1 -79 6042 5314 2164 106 0 48 chr13 33424976 33425287 -68447882 - AluSx SINE Alu -14 298 3 225 0 0 0 chr13 33426433 33426458 -68446711 + (T)n Simple_repeat Simple_repeat 1 25 0 1458 86 0 16 chr13 33427262 33427489 -68445680 + AluY SINE Alu 101 324 0 236 354 18 35 chr13 33429715 33429828 -68443341 - L2 LINE L2 -11 3302 3192 900 262 73 4 chr13 33430865 33431140 -68442029 - L2 LINE L2 -480 2834 2541 192 77 0 0 chr13 33431413 33431439 -68441730 + (TTTTC)n Simple_repeat Simple_repeat 3 28 0 207 296 125 0 chr13 33431768 33431856 -68441313 - MIR SINE MIR -51 211 113 433 273 153 6 chr13 33431967 33432143 -68441026 + MIR SINE MIR 52 253 -9 2260 119 3 0 chr13 33432963 33433265 -68439904 - AluSq SINE Alu -10 303 1 3106 217 78 58 chr13 33433498 33434523 -68438646 + MER69 DNA AcHobo 89 1133 -1393 588 128 0 0 chr13 33434524 33434618 -68438551 + L1PA16 LINE L1 6057 6150 -16 2306 111 0 9 chr13 33434625 33434940 -68438229 + AluSx SINE Alu 1 312 0 8072 49 1 0 chr13 33434990 33436755 -68436414 + L1PA6 LINE L1 4387 6154 0 689 171 92 12 chr13 33436814 33436978 -68436191 + MER69 DNA AcHobo 2347 2523 -3 292 319 157 0 chr13 33437067 33437233 -68435936 + MIR SINE MIR 60 251 -11 234 0 0 0 chr13 33437511 33437537 -68435632 + (CA)n Simple_repeat Simple_repeat 2 27 0 2468 93 0 0 chr13 33438062 33438373 -68434796 + AluSx SINE Alu 2 312 0 188 211 42 99 chr13 33439006 33439077 -68434092 - L2 LINE L2 -5 3308 3242 1696 153 7 45 chr13 33439091 33439399 -68433770 - AluJo SINE Alu -16 296 1 1458 117 21 0 chr13 33439686 33439925 -68433244 - L1MA4 LINE L1 -4 6296 6053 23 54 0 0 chr13 33440464 33440501 -68432668 + AT_rich Low_complexity Low_complexity 1 37 0 2503 61 0 10 chr13 33440900 33441212 -68431957 + AluSc SINE Alu 1 309 0 248 336 31 23 chr13 33441363 33441491 -68431678 + L2 LINE L2 3138 3266 -6 262 377 47 22 chr13 33443630 33443991 -68429178 + L2 LINE L2 2283 2652 -662 2992 112 2 0 chr13 33444200 33444639 -68428530 - L1MB3 LINE L1 -8 6175 5736 212 326 32 32 chr13 33444701 33444796 -68428373 + L2 LINE L2 2712 2806 -508 282 314 95 19 chr13 33444853 33444958 -68428211 - L2 LINE L2 -3 3269 3157 2005 149 3 0 chr13 33445608 33445896 -68427273 - AluSx SINE Alu -23 289 1 2275 101 0 25 chr13 33447600 33447917 -68425252 + AluJb SINE Alu 1 309 -3 207 0 0 0 chr13 33448630 33448653 -68424516 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 216 149 0 85 chr13 33448949 33448996 -68424173 + L2 LINE L2 3271 3313 0 1874 156 69 0 chr13 33449336 33449625 -68423544 - AluSx SINE Alu -3 309 1 41071 30 21 2 chr13 33449935 33455970 -68417199 - L1PA2 LINE L1 0 6155 1 233 160 20 0 chr13 33458151 33458201 -68414968 - MLT2B1 LTR ERVL 0 554 504 1379 206 92 70 chr13 33458242 33458699 -68414470 - MLT2B1 LTR ERVL -53 467 1 25 0 0 0 chr13 33458824 33458849 -68414320 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr13 33459886 33459926 -68413243 + AT_rich Low_complexity Low_complexity 1 40 0 701 142 17 50 chr13 33460111 33460231 -68412938 - FLAM_C SINE Alu -11 132 17 377 258 112 102 chr13 33462084 33462476 -68410693 + MLT1L LTR MaLR 6 401 -214 901 171 84 46 chr13 33462817 33463012 -68410157 - MER63 DNA MER1_type -16 1044 837 1651 153 13 67 chr13 33463012 33463326 -68409843 - AluJo SINE Alu -15 297 1 901 171 84 46 chr13 33463326 33463369 -68409800 - MER63 DNA MER1_type -223 837 797 2595 96 2 5 chr13 33463369 33463764 -68409405 - L1M2 LINE L1 -584 5707 5314 1713 182 4 0 chr13 33464746 33465026 -68408143 - AluJo SINE Alu -31 281 1 1525 184 70 27 chr13 33465484 33465815 -68407354 - MLT1A1 LTR MaLR 0 365 21 744 185 99 0 chr13 33465830 33465981 -68407188 - AluJo SINE Alu -97 215 50 553 259 17 32 chr13 33466200 33466364 -68406805 - MIR SINE MIR -66 142 3 222 241 43 139 chr13 33468059 33468246 -68404923 + MIR SINE MIR 21 190 -18 1986 102 88 0 chr13 33468870 33469144 -68404025 - AluSx SINE Alu -14 298 1 1295 137 13 4 chr13 33469160 33469386 -68403783 - L1MB3 LINE L1 -7 6176 5949 494 274 173 10 chr13 33471300 33471508 -68401661 + MIR SINE MIR 7 248 -14 1430 233 7 3 chr13 33472505 33472797 -68400372 + AluJb SINE Alu 2 294 -18 252 0 0 0 chr13 33472800 33472828 -68400341 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1928 148 122 26 chr13 33472963 33473389 -68399780 - MLT1C LTR MaLR 0 467 1 571 284 42 21 chr13 33474269 33474505 -68398664 + L1ME4a LINE L1 5637 5877 -244 1963 159 0 0 chr13 33474609 33474905 -68398264 - AluJo SINE Alu -16 296 1 203 179 0 0 chr13 33475993 33476032 -68397137 + T-rich Low_complexity Low_complexity 3 41 0 289 100 0 0 chr13 33477037 33477077 -68396092 + MADE1 DNA Mariner 1 40 -40 356 241 73 125 chr13 33477187 33477419 -68395750 - L1MC4 LINE L1 -1 8041 7822 753 237 12 43 chr13 33477456 33477713 -68395456 - L1ME2 LINE L1 -10 6154 5906 880 103 0 0 chr13 33477880 33477997 -68395172 - AluSq/x SINE Alu -196 117 1 268 284 0 0 chr13 33478445 33478512 -68394657 + CT-rich Low_complexity Low_complexity 2 68 0 2140 136 0 0 chr13 33479916 33480210 -68392959 - AluSx SINE Alu -18 294 1 265 327 0 19 chr13 33480322 33480429 -68392740 - L3b LINE CR1 -202 1381 1277 2424 80 0 3 chr13 33481231 33481530 -68391639 + AluSc SINE Alu 1 298 -11 332 48 0 0 chr13 33481742 33481784 -68391385 + MER4E LTR ERV1 653 694 -72 201 361 0 0 chr13 33481924 33481985 -68391184 + MIR SINE MIR 42 102 -106 41 48 0 0 chr13 33482307 33482369 -68390800 + AT_rich Low_complexity Low_complexity 1 62 0 427 264 158 10 chr13 33482421 33482713 -68390456 - L1MEc LINE L1 -4709 1687 1353 7076 227 55 26 chr13 33482717 33487199 -68385970 + L1MB7 LINE L1 118 4827 -1817 1110 142 124 34 chr13 33487199 33487397 -68385772 + Tigger2 DNA MER2_type 1 180 -2538 1868 162 0 9 chr13 33487397 33487712 -68385457 - AluJb SINE Alu 0 312 1 1110 142 124 34 chr13 33487712 33487895 -68385274 + Tigger2 DNA MER2_type 180 2718 0 1210 170 9 9 chr13 33487948 33488160 -68385009 - AluJb SINE Alu -16 296 85 4484 187 36 9 chr13 33488160 33489911 -68383258 + L1MB7 LINE L1 4870 6663 -19 1373 178 127 0 chr13 33489913 33490267 -68382902 + L1MC3 LINE L1 7387 7785 0 1786 154 14 7 chr13 33490272 33490564 -68382605 + AluSq SINE Alu 1 294 -19 667 108 0 0 chr13 33490791 33490893 -68382276 + L1PA14 LINE L1 6060 6161 0 1163 167 152 60 chr13 33491493 33491762 -68381407 + AluJo SINE Alu 1 294 -8 631 197 57 8 chr13 33495237 33495359 -68377810 - L2 LINE L2 -4 3309 3182 738 225 24 62 chr13 33495359 33495568 -68377601 + MIR SINE MIR 46 246 -16 197 242 45 45 chr13 33496074 33496140 -68377029 + MIR3 SINE MIR 100 165 -43 383 282 122 19 chr13 33496949 33497105 -68376064 - MIR3 SINE MIR -5 203 32 221 267 0 0 chr13 33497340 33497385 -68375784 - MIR SINE MIR -71 137 93 221 259 17 0 chr13 33497398 33497456 -68375713 - L2 LINE L2 -6 3307 3249 216 286 143 43 chr13 33497499 33497639 -68375530 - L2 LINE L2 -77 3195 3042 2089 134 0 0 chr13 33498590 33498894 -68374275 - AluSx SINE Alu 0 304 1 180 0 0 0 chr13 33499244 33499264 -68373905 + (TA)n Simple_repeat Simple_repeat 1 20 0 203 265 0 0 chr13 33499274 33499323 -68373846 + (TATG)n Simple_repeat Simple_repeat 3 51 0 934 124 35 41 chr13 33499840 33500009 -68373160 + L1MB2 LINE L1 5624 5791 -380 2043 123 17 3 chr13 33500025 33500327 -68372842 + L1MB2 LINE L1 5864 6169 -2 616 172 95 0 chr13 33500332 33500448 -68372721 + MER5B DNA MER1_type 52 178 0 21 36 0 0 chr13 33500950 33500978 -68372191 + AT_rich Low_complexity Low_complexity 1 28 0 2660 164 21 7 chr13 33501007 33501557 -68371612 - L1MA9 LINE L1 -22 6290 5636 180 0 0 0 chr13 33501565 33501585 -68371584 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2580 69 36 3 chr13 33502365 33502698 -68370471 + THE1A LTR MaLR 1 344 -11 12796 78 11 3 chr13 33502717 33504285 -68368884 + THE1A-int LTR MaLR 1 1580 0 2905 79 0 38 chr13 33504285 33504522 -68368647 + THE1A LTR MaLR 1 221 -134 2359 101 0 0 chr13 33504522 33504818 -68368351 + AluSg SINE Alu 4 299 -11 2905 79 0 38 chr13 33504818 33504949 -68368220 + THE1A LTR MaLR 221 355 0 210 245 41 0 chr13 33505071 33505120 -68368049 + L2 LINE L2 3262 3312 -1 507 258 18 42 chr13 33505213 33505380 -68367789 + MIR SINE MIR 46 208 -54 201 39 0 0 chr13 33505849 33505875 -68367294 + (TG)n Simple_repeat Simple_repeat 2 27 0 369 250 67 0 chr13 33507230 33507334 -68365835 + MIR SINE MIR 93 203 -59 421 289 91 37 chr13 33507643 33507840 -68365329 - MIR SINE MIR -42 220 16 336 226 39 59 chr13 33508837 33508939 -68364230 + L2 LINE L2 3209 3308 -5 329 191 0 45 chr13 33508990 33509079 -68364090 + L1MC5 LINE L1 7832 7916 -45 2198 110 0 0 chr13 33509423 33509714 -68363455 - AluSq SINE Alu -22 291 1 2094 146 0 3 chr13 33509719 33510028 -68363141 - AluSx SINE Alu -4 308 1 1769 158 3 24 chr13 33510565 33510857 -68362312 + AluJo SINE Alu 6 291 -21 216 97 0 0 chr13 33510857 33510888 -68362281 + (TAAG)n Simple_repeat Simple_repeat 1 31 0 3419 186 52 14 chr13 33510905 33511534 -68361635 + MER82 DNA MER2_type 1 653 0 23 0 0 0 chr13 33511701 33511724 -68361445 + AT_rich Low_complexity Low_complexity 1 23 0 5987 118 43 4 chr13 33512643 33513581 -68359588 + Tigger3b DNA MER2_type 1 974 -257 588 275 81 31 chr13 33514368 33514626 -68358543 + L2 LINE L2 3041 3311 -2 507 333 24 6 chr13 33514868 33515033 -68358136 + MIR3 SINE MIR 31 198 -10 243 0 0 0 chr13 33515438 33515465 -68357704 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 2020 128 0 4 chr13 33515465 33515746 -68357423 - AluSx SINE Alu -32 280 1 24 0 0 0 chr13 33515746 33515770 -68357399 + AT_rich Low_complexity Low_complexity 1 24 0 1862 142 26 0 chr13 33515886 33516188 -68356981 - AluSx SINE Alu -1 311 2 23 54 0 0 chr13 33517136 33517173 -68355996 + AT_rich Low_complexity Low_complexity 1 37 0 329 212 106 0 chr13 33517441 33517526 -68355643 + MER103 DNA DNA 10 103 -63 423 279 55 38 chr13 33517720 33517903 -68355266 + L2 LINE L2 2772 2957 -357 2138 103 7 17 chr13 33517918 33518208 -68354961 - AluSc SINE Alu -18 291 5 210 188 42 42 chr13 33518844 33518892 -68354277 - MIR3 SINE MIR -49 159 112 303 208 56 0 chr13 33518899 33518971 -68354198 + MER91C DNA MER1_type 33 108 -32 214 176 0 0 chr13 33518981 33519015 -68354154 - MIR SINE MIR -89 119 86 324 321 109 30 chr13 33519140 33519405 -68353764 + L3 LINE CR1 833 1118 -459 255 159 23 0 chr13 33519501 33519545 -68353624 + MIR SINE MIR 218 262 0 327 179 0 0 chr13 33519743 33519810 -68353359 + CT-rich Low_complexity Low_complexity 3 69 0 568 252 189 37 chr13 33519962 33520232 -68352937 - L2 LINE L2 -4 3268 2958 1838 181 0 10 chr13 33520303 33520606 -68352563 - AluJo SINE Alu -9 303 4 284 318 63 16 chr13 33521762 33521888 -68351281 - L2 LINE L2 -18 3295 3164 803 254 46 171 chr13 33521921 33522682 -68350487 - L2 LINE L2 -848 2466 1801 333 0 0 0 chr13 33523976 33524013 -68349156 + (CA)n Simple_repeat Simple_repeat 2 38 0 2544 62 3 3 chr13 33524189 33524494 -68348675 + AluSp SINE Alu 1 305 -8 290 160 0 53 chr13 33525185 33525260 -68347909 - L1ME4a LINE L1 -3 6118 6048 240 35 0 0 chr13 33525918 33525947 -68347222 + (CA)n Simple_repeat Simple_repeat 1 29 0 7839 46 0 0 chr13 33525991 33527062 -68346107 + L1PA6 LINE L1 5078 6148 -6 473 291 16 0 chr13 33527253 33527380 -68345789 - L1ME3A LINE L1 -98 6072 5944 843 277 182 9 chr13 33527430 33527972 -68345197 + LTR50 LTR ERVL 46 771 -24 868 292 82 19 chr13 33528132 33528447 -68344722 - HAL1 LINE L1 -529 1978 1644 1149 257 82 14 chr13 33528459 33529440 -68343729 - HAL1 LINE L1 -913 1594 419 947 257 28 28 chr13 33529489 33529773 -68343396 - HAL1 LINE L1 -2223 284 1 216 0 0 0 chr13 33529802 33529826 -68343343 + (T)n Simple_repeat Simple_repeat 1 24 0 1970 65 19 27 chr13 33529947 33530207 -68342962 - AluY SINE Alu -15 296 39 1158 295 53 28 chr13 33531244 33531752 -68341417 + MLT1K LTR MaLR 66 586 -2 2429 71 0 3 chr13 33532080 33532376 -68340793 - AluY SINE Alu -16 295 1 777 98 0 0 chr13 33532793 33532905 -68340264 + (TTTC)n Simple_repeat Simple_repeat 3 114 0 2115 98 14 4 chr13 33532907 33533184 -68339985 - AluSq SINE Alu -32 281 2 385 190 25 0 chr13 33533269 33533348 -68339821 - L1MB7 LINE L1 0 6184 6104 368 125 80 0 chr13 33533523 33533611 -68339558 + L1ME4a LINE L1 6023 6117 -4 2208 86 0 24 chr13 33533775 33534089 -68339080 - AluSq SINE Alu 0 307 1 25 31 0 0 chr13 33534090 33534122 -68339047 + AT_rich Low_complexity Low_complexity 1 32 0 2186 62 0 0 chr13 33534780 33535085 -68338084 - AluY SINE Alu 0 331 27 22 35 0 0 chr13 33535532 33535561 -68337608 + AT_rich Low_complexity Low_complexity 1 29 0 246 32 0 0 chr13 33536022 33536053 -68337116 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 1874 124 19 0 chr13 33536064 33536331 -68336838 - AluSx SINE Alu -40 272 1 403 334 45 51 chr13 33537738 33537975 -68335194 + MIR SINE MIR 3 256 -6 1885 143 6 30 chr13 33539552 33539881 -68333288 - L1MA7 LINE L1 -2 6289 5969 264 330 77 19 chr13 33542011 33542220 -68330949 - L2 LINE L2 -969 2345 2125 2444 78 0 0 chr13 33543041 33543335 -68329834 + AluSc SINE Alu 1 294 -15 1556 178 36 7 chr13 33543630 33543911 -68329258 + AluJo SINE Alu 5 293 -19 1056 321 63 39 chr13 33544665 33545176 -68327993 - L3 LINE CR1 -517 1060 538 5274 113 19 7 chr13 33545182 33546052 -68327117 - Tigger3(Golem) DNA MER2_type -1 3028 2148 538 198 0 27 chr13 33546081 33546192 -68326977 - Tigger3(Golem) DNA MER2_type -2921 108 1 268 254 11 0 chr13 33546786 33546963 -68326206 + (CA)n Simple_repeat Simple_repeat 2 180 0 775 203 92 0 chr13 33547116 33547279 -68325890 + MER45A DNA AcHobo 1 178 0 3889 137 14 60 chr13 33547511 33548234 -68324935 - LTR8 LTR ERV1 0 691 2 2358 108 0 9 chr13 33548301 33548616 -68324553 - AluSx SINE Alu 0 312 1 775 224 35 80 chr13 33548684 33548997 -68324172 - L2 LINE L2 -10 3303 3005 294 229 0 12 chr13 33549841 33549924 -68323245 + LTR33A LTR ERVL 426 507 -16 1095 168 84 4 chr13 33550159 33550409 -68322760 - L1MA9 LINE L1 -32 6280 6011 1298 124 10 0 chr13 33550445 33550654 -68322515 - L1PA14 LINE L1 0 6161 5951 315 265 12 59 chr13 33550818 33550988 -68322181 - HAL1b LINE L1 -437 911 750 234 191 0 0 chr13 33551349 33551396 -68321773 + T-rich Low_complexity Low_complexity 1 47 0 341 322 103 13 chr13 33551464 33551697 -68321472 - HAL1 LINE L1 -590 1917 1664 265 299 57 25 chr13 33552410 33552567 -68320602 - MIR3 SINE MIR -27 181 20 306 0 0 0 chr13 33553516 33553550 -68319619 + (A)n Simple_repeat Simple_repeat 1 34 0 334 339 162 44 chr13 33554041 33554430 -68318739 + L2 LINE L2 2824 3258 -14 1654 312 71 14 chr13 33554684 33555342 -68317827 - L3 LINE CR1 -2 1575 880 21 0 0 0 chr13 33555509 33555530 -68317639 + AT_rich Low_complexity Low_complexity 1 21 0 271 308 9 0 chr13 33555722 33555829 -68317340 + MARNA DNA Mariner 141 248 -338 27 0 0 0 chr13 33556384 33556411 -68316758 + AT_rich Low_complexity Low_complexity 1 27 0 4006 106 21 32 chr13 33557452 33558228 -68314941 - L1PB1 LINE L1 -16 6150 5333 486 226 57 40 chr13 33559379 33559462 -68313707 - MER104 DNA Tc2 -1718 180 100 1514 194 40 48 chr13 33559462 33559860 -68313309 - MLT2C1 LTR ERVL -2 395 1 486 226 57 40 chr13 33559860 33559953 -68313216 - MER104 DNA Tc2 -1798 100 1 281 262 164 16 chr13 33560080 33560202 -68312967 - MIR3 SINE MIR -56 152 13 705 281 83 67 chr13 33560489 33560984 -68312185 + LTR33A LTR ERVL 3 505 -18 1474 142 46 0 chr13 33561082 33561342 -68311827 - MSTB LTR MaLR 0 426 155 975 113 0 0 chr13 33561519 33561661 -68311508 - MSTB LTR MaLR -284 142 1 198 337 22 45 chr13 33561761 33561850 -68311319 - MIR SINE MIR -91 117 31 319 341 121 14 chr13 33561859 33562082 -68311087 + MIR SINE MIR 6 252 -10 2283 104 10 0 chr13 33562258 33562566 -68310603 + AluSx SINE Alu 1 311 -1 240 192 0 19 chr13 33563907 33563959 -68309210 + CT-rich Low_complexity Low_complexity 2 52 0 26826 93 3 15 chr13 33564005 33569025 -68304144 - L1PA7 LINE L1 0 6154 1178 3502 243 58 66 chr13 33569281 33570993 -68302176 + L1ME4a LINE L1 44 1767 -4313 2138 103 14 7 chr13 33570993 33571283 -68301886 + AluSc SINE Alu 1 292 -17 3502 243 58 66 chr13 33571283 33571387 -68301782 + L1ME4a LINE L1 1767 1870 -4210 270 0 0 0 chr13 33571387 33571417 -68301752 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 702 113 0 0 chr13 33571416 33571522 -68301647 + (TA)n Simple_repeat Simple_repeat 1 106 0 3502 243 58 66 chr13 33571417 33571567 -68301602 + L1ME4a LINE L1 1870 2020 -4060 2204 104 16 0 chr13 33571567 33571874 -68301295 + AluSx SINE Alu 1 312 0 3502 243 58 66 chr13 33571874 33573323 -68299846 + L1ME4a LINE L1 2020 3289 -2791 28 29 0 0 chr13 33573518 33573553 -68299616 + AT_rich Low_complexity Low_complexity 1 35 0 8648 178 28 8 chr13 33573553 33575707 -68297462 - L1PA15 LINE L1 -1 6164 3997 2221 101 0 7 chr13 33575707 33576003 -68297166 - AluSq SINE Alu -19 294 1 8648 178 28 8 chr13 33576003 33576435 -68296734 - L1PA15 LINE L1 -2168 3997 3575 4863 126 1 3 chr13 33576502 33577238 -68295931 - L1PA16 LINE L1 -9 6157 5423 2160 200 68 29 chr13 33577239 33578040 -68295129 + L1ME4a LINE L1 5001 5876 -224 668 321 127 3 chr13 33578098 33578459 -68294710 - L2 LINE L2 -969 2345 1940 28 29 0 0 chr13 33578616 33578651 -68294518 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 33578773 33578819 -68294350 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 33579006 33579036 -68294133 + AT_rich Low_complexity Low_complexity 1 30 0 388 247 119 44 chr13 33580154 33580326 -68292843 + MIR SINE MIR 6 184 -63 545 280 119 13 chr13 33582141 33582377 -68290792 + MIR SINE MIR 2 262 0 247 229 0 0 chr13 33582630 33582691 -68290478 + L1ME4a LINE L1 5922 5982 -73 1462 130 56 53 chr13 33583610 33583933 -68289236 + MER33 DNA MER1_type 1 324 0 350 262 56 9 chr13 33583962 33584069 -68289100 + MIR SINE MIR 69 180 -82 32 0 0 0 chr13 33584082 33584114 -68289055 + AT_rich Low_complexity Low_complexity 1 32 0 251 246 8 29 chr13 33586951 33587079 -68286090 + MER5B DNA MER1_type 1 178 0 25 0 0 0 chr13 33587258 33587283 -68285886 + AT_rich Low_complexity Low_complexity 1 25 0 403 256 103 26 chr13 33587283 33587478 -68285691 - L1ME4a LINE L1 -14 6107 5898 591 347 50 0 chr13 33589693 33589935 -68283234 + MIR SINE MIR 1 254 -8 331 247 173 44 chr13 33589987 33590134 -68283035 + L1ME4a LINE L1 5554 5681 -440 4024 157 14 4 chr13 33590134 33590849 -68282320 - L1MD1 LINE L1 -1 6241 5520 331 247 173 44 chr13 33590849 33591065 -68282104 + L1ME4a LINE L1 5681 5964 -157 373 327 72 33 chr13 33591286 33591803 -68281366 - L1ME4a LINE L1 -1999 5809 5273 445 270 89 58 chr13 33591822 33592115 -68281054 - L1ME4a LINE L1 -890 5256 4955 234 226 48 0 chr13 33592344 33592406 -68280763 + L1ME LINE L1 5855 5919 -202 31 26 0 0 chr13 33592662 33592700 -68280469 + AT_rich Low_complexity Low_complexity 1 38 0 807 299 30 15 chr13 33592700 33592964 -68280205 - L3 LINE CR1 -17 1560 1293 189 0 0 0 chr13 33592970 33592991 -68280178 + (T)n Simple_repeat Simple_repeat 1 21 0 761 323 18 4 chr13 33593091 33593320 -68279849 - MIR SINE MIR -23 239 8 1204 243 56 21 chr13 33593360 33593698 -68279471 - MLT1H LTR MaLR -197 352 3 225 108 0 0 chr13 33597855 33597892 -68275277 + (TG)n Simple_repeat Simple_repeat 2 38 0 423 320 155 0 chr13 33598181 33598387 -68274782 - MIR SINE MIR -6 256 19 536 261 13 32 chr13 33598396 33598553 -68274616 - MER5A DNA MER1_type 0 189 36 603 238 121 29 chr13 33599107 33599313 -68273856 - MIR SINE MIR -12 250 26 244 305 0 49 chr13 33600426 33600508 -68272661 + MIR SINE MIR 61 138 -124 433 284 56 0 chr13 33600986 33601148 -68272021 - LTR67 LTR ERVL -7 550 380 2166 159 17 26 chr13 33601418 33601847 -68271322 + MSTB LTR MaLR 1 363 -1 1946 171 7 3 chr13 33602658 33602967 -68270202 - AluJo SINE Alu -2 310 1 431 235 35 0 chr13 33602982 33603067 -68270102 - L2 LINE L2 -38 3234 3147 2762 162 17 53 chr13 33604061 33604641 -68268528 - MER89 LTR ERV1 0 559 1 329 310 55 28 chr13 33605308 33605453 -68267716 - MIR SINE MIR -34 228 80 445 236 43 14 chr13 33605459 33605599 -68267570 + LTR1 LTR ERV1 77 220 -565 406 199 23 136 chr13 33605724 33605900 -68267269 + LTR28 LTR ERV1 865 1020 0 3315 177 21 34 chr13 33605900 33606628 -68266541 + L1MA10 LINE L1 5579 6296 -38 723 139 0 0 chr13 33606634 33606742 -68266427 - FLAM_C SINE Alu -15 128 21 24 0 0 0 chr13 33607431 33607455 -68265714 + AT_rich Low_complexity Low_complexity 1 24 0 340 306 104 53 chr13 33608731 33608951 -68264218 + L1P LINE L1 2852 3059 -3087 2049 161 0 3 chr13 33608951 33609262 -68263907 + AluJb SINE Alu 1 310 -2 340 306 104 53 chr13 33609262 33609465 -68263704 + L1P LINE L1 3059 3250 -2896 1868 197 28 0 chr13 33609465 33609820 -68263349 - MLT1A1 LTR MaLR 0 365 1 340 306 104 53 chr13 33609820 33611043 -68262126 + L1P LINE L1 3250 4583 -1563 261 278 0 0 chr13 33611314 33611368 -68261801 + L2 LINE L2 3214 3267 -5 1456 190 4 15 chr13 33611466 33611735 -68261434 - AluJo SINE Alu -36 276 11 905 250 5 5 chr13 33611796 33611984 -68261185 - MER5A DNA MER1_type -1 188 1 194 174 22 0 chr13 33612042 33612088 -68261081 + (TA)n Simple_repeat Simple_repeat 1 47 0 706 254 119 13 chr13 33612179 33612415 -68260754 - MIR SINE MIR 0 262 2 1318 267 75 3 chr13 33613557 33613946 -68259223 + L2 LINE L2 2434 2850 -464 1339 255 204 51 chr13 33613979 33615068 -68258101 + L2 LINE L2 1251 3199 -114 604 253 195 34 chr13 33616271 33616599 -68256570 + MLT1J2 LTR MaLR 6 386 -64 1969 176 0 0 chr13 33616599 33616901 -68256268 + AluJb SINE Alu 1 302 -10 1625 190 0 11 chr13 33617536 33617820 -68255349 + AluJo SINE Alu 15 295 -17 493 248 0 0 chr13 33617831 33617960 -68255209 + L1MC4a LINE L1 2230 2358 -4038 * 809 278 12 12 chr13 33617959 33618290 -68254879 + L1MC4a LINE L1 3342 3672 -2543 * 994 217 94 8 chr13 33618286 33618669 -68254500 + L1ME4a LINE L1 4233 4648 -1567 6766 182 54 13 chr13 33618679 33620170 -68252999 + L1 LINE L1 3105 4671 -1475 3037 67 0 0 chr13 33620170 33620560 -68252609 - L1PA7 LINE L1 -1 6153 5764 6766 182 54 13 chr13 33620560 33620711 -68252458 + L1 LINE L1 4671 4814 -1332 308 293 117 18 chr13 33620749 33621022 -68252147 + L1MC4a LINE L1 3754 4053 -2162 37 86 0 0 chr13 33621225 33621318 -68251851 + AT_rich Low_complexity Low_complexity 1 93 0 2236 85 0 31 chr13 33621328 33621645 -68251524 + AluSq SINE Alu 1 308 0 335 286 105 40 chr13 33621648 33622274 -68250895 + L1MC4a LINE L1 5327 5616 -695 284 167 24 24 chr13 33622297 33622381 -68250788 + (TA)n Simple_repeat Simple_repeat 1 84 0 2471 75 0 0 chr13 33622588 33622883 -68250286 - AluY SINE Alu -16 295 1 498 255 38 33 chr13 33622963 33623175 -68249994 + L1ME4a LINE L1 5460 5672 -518 200 313 15 0 chr13 33623255 33623322 -68249847 + MIR SINE MIR 185 252 -10 2664 77 3 35 chr13 33623357 33623733 -68249436 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr13 33623753 33623781 -68249388 + AT_rich Low_complexity Low_complexity 1 28 0 395 217 72 46 chr13 33623918 33624070 -68249099 + L1ME4a LINE L1 6013 6168 -22 196 321 0 0 chr13 33624128 33624184 -68248985 + MIR SINE MIR 50 105 -157 2109 76 40 43 chr13 33625142 33625445 -68247724 + AluY SINE Alu 2 303 -8 507 226 250 0 chr13 33625475 33625639 -68247530 + L2 LINE L2 2593 2797 -517 270 204 0 0 chr13 33625639 33625693 -68247476 - MER94 DNA DNA 0 134 81 739 284 82 39 chr13 33625699 33626030 -68247139 + L2 LINE L2 2969 3313 0 298 303 66 41 chr13 33626505 33626627 -68246542 - MIR SINE MIR -115 147 23 252 86 0 0 chr13 33626898 33626933 -68246236 + (T)n Simple_repeat Simple_repeat 1 35 0 240 300 0 0 chr13 33627925 33627985 -68245184 + L2 LINE L2 3250 3309 -4 789 257 76 16 chr13 33628074 33628377 -68244792 - L1MEd LINE L1 -5793 326 6 343 287 95 26 chr13 33628772 33628933 -68244236 - MIR SINE MIR -50 212 42 21 0 0 0 chr13 33629034 33629055 -68244114 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 33629275 33629300 -68243869 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 218 244 202 48 chr13 33629870 33630038 -68243131 + L2 LINE L2 3119 3312 -1 306 291 0 34 chr13 33630731 33630848 -68242321 - MIR SINE MIR -48 214 102 23 0 0 0 chr13 33631717 33631740 -68241429 + AT_rich Low_complexity Low_complexity 1 23 0 1014 134 34 0 chr13 33632479 33632628 -68240541 + FRAM SINE Alu 1 151 -25 378 226 12 0 chr13 33632644 33632728 -68240441 - MER96B DNA MER1_type? -318 99 15 311 286 20 0 chr13 33633005 33633103 -68240066 + MIR SINE MIR 117 216 -46 525 264 39 0 chr13 33633164 33633293 -68239876 + MIR SINE MIR 98 231 -31 244 336 0 18 chr13 33633302 33633415 -68239754 + (CTA)n Simple_repeat Simple_repeat 2 112 0 21 57 0 0 chr13 33634474 33634509 -68238660 + AT_rich Low_complexity Low_complexity 1 35 0 206 248 30 20 chr13 33634561 33634662 -68238507 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 692 291 80 8 chr13 33634700 33634937 -68238232 - MIR SINE MIR -8 254 1 263 270 216 9 chr13 33637432 33637467 -68235702 - L2 LINE L2 -1 3271 3245 1700 124 199 10 chr13 33637467 33637773 -68235396 + THE1B LTR MaLR 1 364 0 263 270 216 9 chr13 33637773 33637848 -68235321 - L2 LINE L2 -27 3245 3138 256 284 53 11 chr13 33638209 33638304 -68234865 + L2 LINE L2 2970 3068 -204 315 0 0 0 chr13 33639338 33639373 -68233796 + (CA)n Simple_repeat Simple_repeat 2 36 0 538 289 39 100 chr13 33641648 33642029 -68231140 + L2 LINE L2 2915 3272 0 189 319 22 22 chr13 33643207 33643298 -68229871 + MIR3 SINE MIR 71 161 -47 431 193 0 0 chr13 33643950 33644033 -68229136 - FLAM_C SINE Alu -4 139 57 620 245 38 6 chr13 33644566 33644725 -68228444 + MIR SINE MIR 99 262 0 350 136 30 0 chr13 33646324 33646390 -68226779 + GA-rich Low_complexity Low_complexity 3 70 0 1659 174 18 81 chr13 33646644 33647028 -68226141 - MLT1A2 LTR MaLR 0 374 15 311 175 9 53 chr13 33647041 33647155 -68226014 + GA-rich Low_complexity Low_complexity 3 111 0 366 273 93 35 chr13 33648499 33648665 -68224504 + MER5A DNA MER1_type 1 189 0 311 259 15 96 chr13 33648674 33648809 -68224360 + MIR SINE MIR 20 143 -119 407 250 214 0 chr13 33649243 33649355 -68223814 + MIR3 SINE MIR 19 154 -54 589 281 18 6 chr13 33650700 33650871 -68222298 + MIR SINE MIR 90 262 0 229 258 72 31 chr13 33651913 33652010 -68221159 + LTR16A1 LTR ERVL 1 101 -356 514 250 0 0 chr13 33652177 33652289 -68220880 + LTR16A LTR ERVL 231 342 -108 308 202 155 0 chr13 33652626 33652710 -68220459 - MER5C DNA MER1_type 0 324 228 3255 173 35 21 chr13 33652716 33653368 -68219801 + L1MC3 LINE L1 7125 7785 0 437 277 62 0 chr13 33653425 33653555 -68219614 - MER5C DNA MER1_type -185 139 2 260 217 27 27 chr13 33653555 33653616 -68219553 + MIR3 SINE MIR 103 164 -44 1916 110 8 11 chr13 33654478 33654742 -68218427 + AluSg SINE Alu 33 295 -15 389 274 157 24 chr13 33654988 33655260 -68217909 - MLT1J2 LTR MaLR -13 437 103 4605 106 120 131 chr13 33655263 33656682 -68216487 - pTR5 LTR ERV1 0 2438 743 321 202 149 43 chr13 33656682 33656776 -68216393 - MLT1J1 LTR MaLR -303 106 3 499 302 31 78 chr13 33656935 33657190 -68215979 + MIR SINE MIR 10 252 -10 * 565 302 49 22 chr13 33657167 33657392 -68215777 - MIR SINE MIR -1 261 31 3086 222 60 44 chr13 33657460 33659141 -68214028 - L1ME1 LINE L1 -5 6095 4387 3688 130 2 26 chr13 33659141 33659681 -68213488 + MER1A DNA MER1_type 1 527 0 182 277 0 0 chr13 33659793 33659840 -68213329 + MIR SINE MIR 108 154 -108 270 0 0 0 chr13 33660042 33660072 -68213097 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 241 234 0 65 chr13 33660595 33660672 -68212497 - MLT1J2 LTR MaLR -2 448 377 324 212 74 50 chr13 33660724 33660896 -68212273 - MLT1J2 LTR MaLR -166 243 68 613 311 58 9 chr13 33661203 33661428 -68211741 + MERVL LTR ERVL 4746 4981 -504 746 213 53 92 chr13 33661437 33661817 -68211352 - L1ME1 LINE L1 -2795 3285 2921 1647 261 121 21 chr13 33661820 33662434 -68210735 - L1ME1 LINE L1 -5313 757 83 1790 253 97 4 chr13 33662754 33663229 -68209940 + LTR33 LTR ERVL 1 519 -2 257 250 10 48 chr13 33663349 33663453 -68209716 - MIR SINE MIR -56 206 107 702 292 52 17 chr13 33663888 33664121 -68209048 + MIR SINE MIR 8 248 -14 2259 141 5 25 chr13 33667393 33667761 -68205408 - MLT1B LTR MaLR 0 390 30 183 42 0 0 chr13 33667813 33667837 -68205332 + (TA)n Simple_repeat Simple_repeat 1 24 0 305 191 0 71 chr13 33668607 33668733 -68204436 + A-rich Low_complexity Low_complexity 5 121 0 258 246 97 9 chr13 33668769 33668883 -68204286 - L1MC4 LINE L1 -1 8041 7918 337 289 173 5 chr13 33668894 33669016 -68204153 - L1MC4 LINE L1 -216 7826 7726 189 0 0 0 chr13 33669016 33669037 -68204132 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 337 289 173 5 chr13 33669037 33669122 -68204047 - L1MC4 LINE L1 -316 7726 7584 208 213 347 0 chr13 33669487 33669562 -68203607 + MIR SINE MIR 131 231 -31 210 37 0 0 chr13 33670294 33670321 -68202848 + (CA)n Simple_repeat Simple_repeat 2 28 0 2621 160 5 0 chr13 33671218 33671619 -68201550 + MER57A LTR ERV1 1 403 0 474 292 16 25 chr13 33671716 33671959 -68201210 - L1MEc LINE L1 -4443 2108 1857 729 81 0 10 chr13 33672270 33672369 -68200800 + MER4A LTR ERV1 1 98 -566 1827 134 3 77 chr13 33672369 33672742 -68200427 + MER4A LTR ERV1 261 664 0 1149 280 69 83 chr13 33672831 33673398 -68199771 + MER77 LTR ERV1 41 599 -6 200 204 23 0 chr13 33673960 33674004 -68199165 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 225 132 0 0 chr13 33674758 33674796 -68198373 + (A)n Simple_repeat Simple_repeat 1 38 0 686 296 46 11 chr13 33675008 33675292 -68197877 + L1ME4a LINE L1 5532 5825 -296 248 229 128 18 chr13 33675379 33675488 -68197681 + L1ME4a LINE L1 5960 6080 -41 201 147 0 0 chr13 33676760 33676794 -68196375 + (A)n Simple_repeat Simple_repeat 1 34 0 204 125 0 0 chr13 33676986 33677018 -68196151 + (CTG)n Simple_repeat Simple_repeat 1 32 0 222 118 0 0 chr13 33677397 33677431 -68195738 + (GGGGA)n Simple_repeat Simple_repeat 2 35 0 302 159 32 0 chr13 33677455 33677518 -68195651 + GA-rich Low_complexity Low_complexity 3 67 0 214 116 93 0 chr13 33677553 33677596 -68195573 + GA-rich Low_complexity Low_complexity 4 50 0 24 0 0 0 chr13 33677627 33677651 -68195518 + AT_rich Low_complexity Low_complexity 1 24 0 1477 214 41 6 chr13 33677788 33678106 -68195063 + MER46C DNA MER2_type 3 331 -7 210 97 32 0 chr13 33678111 33678142 -68195027 - MIR SINE MIR -118 144 113 1155 163 25 5 chr13 33679257 33679460 -68193709 - MER20 DNA MER1_type 0 219 13 434 183 12 0 chr13 33679657 33679739 -68193430 + MLT1A2 LTR MaLR 288 370 -4 46 33 0 0 chr13 33679892 33679952 -68193217 + AT_rich Low_complexity Low_complexity 1 60 0 1298 155 16 52 chr13 33679957 33680209 -68192960 + L1MC/D LINE L1 5547 5789 -570 231 61 0 0 chr13 33680301 33680334 -68192835 + (TG)n Simple_repeat Simple_repeat 2 34 0 181 366 24 0 chr13 33681162 33681285 -68191884 + L2 LINE L2 2596 2721 -593 527 289 22 101 chr13 33682205 33682382 -68190787 + L2 LINE L2 3051 3200 -113 4517 130 25 12 chr13 33682382 33683074 -68190095 - L1MB3 LINE L1 0 6183 5483 527 289 22 101 chr13 33683074 33683173 -68189996 + L2 LINE L2 3200 3305 -8 242 324 112 39 chr13 33683203 33683382 -68189787 + MIR SINE MIR 39 230 -32 638 284 17 30 chr13 33683548 33683780 -68189389 + L2 LINE L2 3085 3313 0 328 358 67 65 chr13 33683778 33684242 -68188927 - L2 LINE L2 -4 3268 2804 * 1412 237 15 26 chr13 33684876 33685202 -68187967 - MLT1C LTR MaLR 0 467 144 2532 134 22 6 chr13 33685202 33685561 -68187608 + MLT1A1 LTR MaLR 1 365 0 1412 237 15 26 chr13 33685561 33685576 -68187593 - MLT1C LTR MaLR -323 144 130 * 1707 165 57 9 chr13 33685573 33685889 -68187280 - MLT1C LTR MaLR -135 332 2 322 347 33 0 chr13 33687768 33687889 -68185280 + L1ME LINE L1 137 261 -5944 2443 271 102 15 chr13 33687929 33688792 -68184377 + L1ME LINE L1 177 1114 -5282 * 3999 242 21 10 chr13 33688759 33689795 -68183374 + L1MB3 LINE L1 3612 4659 -1556 * 4788 150 73 10 chr13 33689781 33689825 -68183344 + L1MB3 LINE L1 5293 5333 -919 618 88 0 0 chr13 33689825 33689905 -68183264 - MADE1 DNA Mariner 0 80 1 4788 150 73 10 chr13 33689905 33690757 -68182412 + L1MB3 LINE L1 5333 6248 -4 399 261 30 52 chr13 33691012 33691146 -68182023 - L2 LINE L2 0 3272 3142 211 176 39 0 chr13 33691953 33692004 -68181165 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 247 239 60 0 chr13 33692153 33692220 -68180949 - L2 LINE L2 -8 3305 3235 190 167 130 0 chr13 33692629 33692683 -68180486 - MIR SINE MIR -108 100 40 220 224 0 0 chr13 33693640 33693689 -68179480 + T-rich Low_complexity Low_complexity 1 49 0 227 83 0 28 chr13 33695156 33695192 -68177977 + LTR27 LTR ERV1 498 532 -104 562 271 55 15 chr13 33696482 33696681 -68176488 + MER112 DNA MER1_type 49 255 -5 2429 101 0 0 chr13 33700492 33700799 -68172370 - AluSx SINE Alu -5 307 1 1169 264 71 33 chr13 33700830 33701254 -68171915 + LTR16B LTR ERVL 8 447 -17 1064 115 0 0 chr13 33702100 33702256 -68170913 + MLT1B LTR MaLR 235 390 0 2399 248 67 32 chr13 33702259 33703122 -68170047 + L1ME3A LINE L1 5254 6146 -24 267 286 102 64 chr13 33703187 33703453 -68169716 + MLT1J LTR MaLR 232 507 -4 620 279 117 22 chr13 33703869 33704185 -68168984 - MLT1J LTR MaLR -144 367 22 389 282 86 73 chr13 33705199 33705419 -68167750 + L2 LINE L2 2830 3052 -220 183 293 155 35 chr13 33705492 33705608 -68167561 + L2 LINE L2 3182 3311 -2 702 311 26 7 chr13 33706121 33706394 -68166775 + L1ME3A LINE L1 5445 5722 -448 608 86 0 11 chr13 33706470 33706563 -68166606 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 306 276 79 79 chr13 33706643 33706897 -68166272 + L1ME3A LINE L1 5841 6094 -76 25 0 0 0 chr13 33706965 33706990 -68166179 + AT_rich Low_complexity Low_complexity 1 25 0 353 305 33 8 chr13 33706990 33707104 -68166065 - MIR SINE MIR -93 115 3 1532 179 8 0 chr13 33707140 33707437 -68165732 + L1MB2 LINE L1 5736 6047 -121 2305 114 0 0 chr13 33707976 33708283 -68164886 + AluSg SINE Alu 1 307 -3 1803 86 0 0 chr13 33708744 33708976 -68164193 - L1PA6 LINE L1 -11 6143 5912 1487 47 0 0 chr13 33708977 33709168 -68164001 + L1P2 LINE L1 5613 5803 -351 280 235 136 0 chr13 33709460 33709541 -68163628 + MIR SINE MIR 84 175 -87 386 348 25 0 chr13 33709624 33709785 -68163384 + MIR3 SINE MIR 28 192 -16 289 313 47 0 chr13 33713873 33714001 -68159168 + HAL1b LINE L1 447 580 -768 1567 176 76 3 chr13 33714085 33714375 -68158794 + AluJb SINE Alu 1 311 -1 541 99 0 12 chr13 33714449 33714530 -68158639 - MADE1 DNA Mariner 0 80 1 315 318 47 56 chr13 33715263 33715370 -68157799 - MIR SINE MIR -63 145 40 319 315 42 71 chr13 33715544 33715782 -68157387 + MLT1I LTR MaLR 179 409 0 658 344 113 9 chr13 33715803 33716149 -68157020 - L3 LINE CR1 -940 637 256 2069 109 3 36 chr13 33716643 33716946 -68156223 + AluSq SINE Alu 2 294 -19 380 295 98 23 chr13 33718056 33718229 -68154940 - MIR3 SINE MIR -7 201 16 2048 112 0 0 chr13 33718246 33718562 -68154607 - AluSx SINE Alu 0 329 14 1892 148 42 3 chr13 33718661 33718944 -68154225 - AluJo SINE Alu -18 294 1 222 377 138 13 chr13 33719089 33719320 -68153849 + L2 LINE L2 2718 2977 -337 311 318 70 8 chr13 33719682 33719811 -68153358 + L1ME4a LINE L1 5259 5395 -2413 980 92 15 0 chr13 33719813 33719944 -68153225 + AluSc SINE Alu 166 298 -11 544 238 20 0 chr13 33720053 33720200 -68152969 + L1ME4a LINE L1 5520 5669 -452 7706 21 2 0 chr13 33720201 33721287 -68151882 + L1PA3 LINE L1 5130 6217 0 265 265 229 9 chr13 33721315 33721651 -68151518 + L1ME4a LINE L1 5703 6112 -9 257 202 9 101 chr13 33721664 33721773 -68151396 - L1MC4 LINE L1 -1339 6703 6605 387 295 41 16 chr13 33721996 33722118 -68151051 + L2 LINE L2 3143 3267 -5 1867 137 53 66 chr13 33722575 33722954 -68150215 - THE1C LTR MaLR 0 375 2 248 323 217 5 chr13 33723549 33723738 -68149431 + MIR SINE MIR 22 250 -12 393 265 16 81 chr13 33723887 33724072 -68149097 - MIR SINE MIR -70 192 20 360 189 144 27 chr13 33724537 33724648 -68148521 + MER46C DNA MER2_type 1 124 -214 400 248 64 0 chr13 33724704 33724813 -68148356 + MER46C DNA MER2_type 209 324 -14 706 304 12 90 chr13 33725751 33726096 -68147073 + L2 LINE L2 2943 3260 -12 274 304 186 26 chr13 33726400 33726712 -68146457 - L2 LINE L2 -803 2511 2150 226 275 33 11 chr13 33726780 33726871 -68146298 + GA-rich Low_complexity Low_complexity 4 96 0 1460 111 0 0 chr13 33726874 33727063 -68146106 - AluSx SINE Alu -123 189 1 358 312 86 62 chr13 33727078 33727447 -68145722 - L2 LINE L2 -71 3242 2841 2011 132 3 14 chr13 33727447 33727743 -68145426 + AluSx SINE Alu 1 293 -19 358 312 86 62 chr13 33727743 33727866 -68145303 - L2 LINE L2 -472 2841 2723 395 219 144 64 chr13 33728946 33729133 -68144036 + Charlie7 DNA MER1_type 44 245 -2367 2975 220 56 32 chr13 33729192 33730788 -68142381 + L1ME1 LINE L1 4532 6162 -4 375 235 151 17 chr13 33731441 33731560 -68141609 + MIR3 SINE MIR 15 149 -59 225 233 0 0 chr13 33731900 33731943 -68141226 - L2 LINE L2 -4 3309 3267 1738 165 41 48 chr13 33731976 33732369 -68140800 + MLT1B LTR MaLR 1 390 0 3481 137 9 6 chr13 33732932 33733456 -68139713 - MER1A DNA MER1_type 0 527 2 205 359 75 13 chr13 33733607 33733766 -68139403 + L2 LINE L2 2150 2318 -996 4649 225 46 18 chr13 33734666 33735464 -68137705 - L1M4 LINE L1 -1198 4948 4174 1980 148 0 3 chr13 33735464 33735777 -68137392 - AluSx SINE Alu 0 312 1 4649 225 46 18 chr13 33735777 33736493 -68136676 - L1M4 LINE L1 -1972 4174 3317 252 86 0 0 chr13 33737841 33737876 -68135293 + (T)n Simple_repeat Simple_repeat 1 35 0 240 300 0 0 chr13 33738868 33738928 -68134241 + L2 LINE L2 3250 3309 -4 789 257 76 16 chr13 33739017 33739320 -68133849 - L1MEd LINE L1 -5793 326 6 343 287 95 26 chr13 33739715 33739876 -68133293 - MIR SINE MIR -50 212 42 21 0 0 0 chr13 33739977 33739998 -68133171 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 33740218 33740243 -68132926 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 218 244 202 48 chr13 33740813 33740981 -68132188 + L2 LINE L2 3119 3312 -1 306 291 0 34 chr13 33741674 33741791 -68131378 - MIR SINE MIR -48 214 102 23 0 0 0 chr13 33742660 33742683 -68130486 + AT_rich Low_complexity Low_complexity 1 23 0 1014 134 34 0 chr13 33743422 33743571 -68129598 + FRAM SINE Alu 1 151 -25 378 226 12 0 chr13 33743587 33743671 -68129498 - MER96B DNA MER1_type? -318 99 15 311 286 20 0 chr13 33743948 33744046 -68129123 + MIR SINE MIR 117 216 -46 525 264 39 0 chr13 33744107 33744236 -68128933 + MIR SINE MIR 98 231 -31 244 336 0 18 chr13 33744245 33744358 -68128811 + (CTA)n Simple_repeat Simple_repeat 2 112 0 21 57 0 0 chr13 33745417 33745452 -68127717 + AT_rich Low_complexity Low_complexity 1 35 0 206 248 30 20 chr13 33745504 33745605 -68127564 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 692 291 80 8 chr13 33745643 33745880 -68127289 - MIR SINE MIR -8 254 1 261 270 216 9 chr13 33748375 33748410 -68124759 - L2 LINE L2 -1 3271 3245 1847 124 199 10 chr13 33748410 33748716 -68124453 + THE1B LTR MaLR 1 364 0 261 270 216 9 chr13 33748716 33748791 -68124378 - L2 LINE L2 -27 3245 3138 254 284 53 11 chr13 33749152 33749247 -68123922 + L2 LINE L2 2970 3068 -204 315 0 0 0 chr13 33750281 33750316 -68122853 + (CA)n Simple_repeat Simple_repeat 2 36 0 541 289 39 100 chr13 33752591 33752972 -68120197 + L2 LINE L2 2915 3272 0 180 325 24 12 chr13 33754150 33754233 -68118936 + MIR3 SINE MIR 71 154 -54 457 232 161 0 chr13 33754898 33755010 -68118159 - FLAM_A SINE Alu 0 133 4 606 245 38 6 chr13 33755509 33755668 -68117501 + MIR SINE MIR 99 262 0 350 136 30 0 chr13 33757267 33757333 -68115836 + GA-rich Low_complexity Low_complexity 3 70 0 1659 174 18 81 chr13 33757587 33757971 -68115198 - MLT1A2 LTR MaLR 0 374 15 311 175 9 53 chr13 33757984 33758098 -68115071 + GA-rich Low_complexity Low_complexity 3 111 0 366 273 93 35 chr13 33759442 33759608 -68113561 + MER5A DNA MER1_type 1 189 0 311 259 15 96 chr13 33759617 33759752 -68113417 + MIR SINE MIR 20 143 -119 407 250 214 0 chr13 33760186 33760298 -68112871 + MIR3 SINE MIR 19 154 -54 589 281 18 6 chr13 33761643 33761814 -68111355 + MIR SINE MIR 90 262 0 229 258 72 31 chr13 33762856 33762953 -68110216 + LTR16A1 LTR ERVL 1 101 -356 514 250 0 0 chr13 33763120 33763232 -68109937 + LTR16A LTR ERVL 231 342 -108 308 202 155 0 chr13 33763569 33763653 -68109516 - MER5C DNA MER1_type 0 324 228 3255 173 35 21 chr13 33763659 33764311 -68108858 + L1MC3 LINE L1 7125 7785 0 437 277 62 0 chr13 33764368 33764498 -68108671 - MER5C DNA MER1_type -185 139 2 260 217 27 27 chr13 33764498 33764559 -68108610 + MIR3 SINE MIR 103 164 -44 1916 110 8 11 chr13 33765421 33765685 -68107484 + AluSg SINE Alu 33 295 -15 389 274 157 24 chr13 33765931 33766203 -68106966 - MLT1J2 LTR MaLR -13 437 103 4605 106 120 131 chr13 33766206 33767625 -68105544 - pTR5 LTR ERV1 0 2438 743 321 202 149 43 chr13 33767625 33767719 -68105450 - MLT1J1 LTR MaLR -303 106 3 499 302 31 78 chr13 33767878 33768133 -68105036 + MIR SINE MIR 10 252 -10 * 565 302 49 22 chr13 33768110 33768335 -68104834 - MIR SINE MIR -1 261 31 3086 222 60 44 chr13 33768403 33770084 -68103085 - L1ME1 LINE L1 -5 6095 4387 3688 130 2 26 chr13 33770084 33770624 -68102545 + MER1A DNA MER1_type 1 527 0 182 277 0 0 chr13 33770736 33770783 -68102386 + MIR SINE MIR 108 154 -108 270 0 0 0 chr13 33770985 33771015 -68102154 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 241 234 0 65 chr13 33771538 33771615 -68101554 - MLT1J2 LTR MaLR -2 448 377 324 212 74 50 chr13 33771667 33771839 -68101330 - MLT1J2 LTR MaLR -166 243 68 613 311 58 9 chr13 33772146 33772371 -68100798 + MERVL LTR ERVL 4746 4981 -504 746 213 53 92 chr13 33772380 33772760 -68100409 - L1ME1 LINE L1 -2795 3285 2921 1647 261 121 21 chr13 33772763 33773377 -68099792 - L1ME1 LINE L1 -5313 757 83 1790 253 97 4 chr13 33773697 33774172 -68098997 + LTR33 LTR ERVL 1 519 -2 257 250 10 48 chr13 33774292 33774396 -68098773 - MIR SINE MIR -56 206 107 702 292 52 17 chr13 33774831 33775064 -68098105 + MIR SINE MIR 8 248 -14 2259 141 5 25 chr13 33778336 33778704 -68094465 - MLT1B LTR MaLR 0 390 30 183 42 0 0 chr13 33778756 33778780 -68094389 + (TA)n Simple_repeat Simple_repeat 1 24 0 305 191 0 71 chr13 33779550 33779676 -68093493 + A-rich Low_complexity Low_complexity 5 121 0 258 246 97 9 chr13 33779712 33779826 -68093343 - L1MC4 LINE L1 -1 8041 7918 337 289 173 5 chr13 33779837 33779959 -68093210 - L1MC4 LINE L1 -216 7826 7726 189 0 0 0 chr13 33779959 33779980 -68093189 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 337 289 173 5 chr13 33779980 33780065 -68093104 - L1MC4 LINE L1 -316 7726 7584 208 213 347 0 chr13 33780430 33780505 -68092664 + MIR SINE MIR 131 231 -31 210 37 0 0 chr13 33781237 33781264 -68091905 + (CA)n Simple_repeat Simple_repeat 2 28 0 2621 160 5 0 chr13 33782161 33782562 -68090607 + MER57A LTR ERV1 1 403 0 474 292 16 25 chr13 33782659 33782902 -68090267 - L1MEc LINE L1 -4443 2108 1857 729 81 0 10 chr13 33783213 33783312 -68089857 + MER4A LTR ERV1 1 98 -566 1827 134 3 77 chr13 33783312 33783685 -68089484 + MER4A LTR ERV1 261 664 0 1149 280 69 83 chr13 33783774 33784341 -68088828 + MER77 LTR ERV1 41 599 -6 200 204 23 0 chr13 33784903 33784947 -68088222 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 225 132 0 0 chr13 33785701 33785739 -68087430 + (A)n Simple_repeat Simple_repeat 1 38 0 686 296 46 11 chr13 33785951 33786235 -68086934 + L1ME4a LINE L1 5532 5825 -296 248 229 128 18 chr13 33786322 33786431 -68086738 + L1ME4a LINE L1 5960 6080 -41 201 147 0 0 chr13 33787703 33787737 -68085432 + (A)n Simple_repeat Simple_repeat 1 34 0 204 125 0 0 chr13 33787929 33787961 -68085208 + (CTG)n Simple_repeat Simple_repeat 1 32 0 1713 215 75 32 chr13 33788332 33788774 -68084395 + L1MA10 LINE L1 5871 6331 -3 636 259 110 0 chr13 33788832 33789060 -68084109 + L1MD3 LINE L1 7743 7995 0 556 134 0 62 chr13 33789071 33789183 -68083986 + L1MB3 LINE L1 6079 6183 0 592 209 0 0 chr13 33789187 33789292 -68083877 + L1PA16 LINE L1 6053 6157 -9 26 0 0 0 chr13 33789292 33789318 -68083851 + AT_rich Low_complexity Low_complexity 1 26 0 1607 205 65 8 chr13 33789322 33789678 -68083491 + MER101 LTR ERV1 72 447 -27 247 308 33 42 chr13 33789865 33789985 -68083184 - MER5B DNA MER1_type -59 119 1 3235 203 111 88 chr13 33890444 33890525 -67982644 - L1M4 LINE L1 -986 5160 5082 2218 98 3 3 chr13 33890525 33890822 -67982347 + AluSx SINE Alu 1 297 -15 3235 203 111 88 chr13 33890822 33891230 -67981939 - L1M4 LINE L1 -1064 5082 4685 2035 130 7 0 chr13 33891230 33891522 -67981647 + AluSx SINE Alu 1 294 -18 3235 203 111 88 chr13 33891522 33891600 -67981569 - L1M4 LINE L1 -1461 4685 4610 495 0 0 0 chr13 33891600 33891655 -67981514 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 769 142 0 25 chr13 33891661 33891781 -67981388 - FLAM_C SINE Alu -15 118 2 3235 203 111 88 chr13 33891781 33892530 -67980639 - L1M4 LINE L1 -1540 4606 3802 2419 94 3 0 chr13 33892530 33892838 -67980331 - AluSg SINE Alu -1 309 1 3235 203 111 88 chr13 33892838 33892849 -67980320 - L1M4 LINE L1 -2344 3802 3793 6162 164 24 25 chr13 33892856 33894090 -67979079 - L1MC1 LINE L1 -6 6327 5093 2500 54 0 10 chr13 33894090 33894388 -67978781 + AluY SINE Alu 1 295 -16 6162 164 24 25 chr13 33894388 33894405 -67978764 - L1MC1 LINE L1 -1240 5093 5077 2516 166 26 5 chr13 33894405 33894822 -67978347 - MSTB LTR MaLR 0 426 1 6162 164 24 25 chr13 33894822 33895155 -67978014 - L1MC1 LINE L1 -1256 5077 4746 744 194 0 43 chr13 33895155 33895294 -67977875 - FLAM_A SINE Alu 0 133 1 6162 164 24 25 chr13 33895294 33895413 -67977756 - L1MC1 LINE L1 -1587 4746 4628 440 206 0 0 chr13 33895417 33895490 -67977679 - FLAM_A SINE Alu -64 78 6 7947 217 38 72 chr13 33895498 33896530 -67976639 - L1MEc LINE L1 -1401 4814 3749 1872 164 6 13 chr13 33896530 33896842 -67976327 - AluJo SINE Alu -2 310 1 7947 217 38 72 chr13 33896842 33897752 -67975417 - L1MEc LINE L1 -2466 3749 2810 2111 65 0 8 chr13 33897752 33898013 -67975156 + AluY SINE Alu 40 298 -13 7947 217 38 72 chr13 33898013 33898458 -67974711 - L1MEc LINE L1 -3405 2810 2352 2025 122 10 32 chr13 33898458 33898769 -67974400 + AluSx SINE Alu 1 304 -8 7947 217 38 72 chr13 33898769 33898985 -67974184 - L1MEc LINE L1 -3863 2352 2371 2286 120 0 0 chr13 33898985 33899293 -67973876 - AluSg SINE Alu 0 310 3 7947 217 38 72 chr13 33899293 33899731 -67973438 - L1MEc LINE L1 -3843 2372 1921 2510 206 37 19 chr13 33899708 33900299 -67972870 + L1M4 LINE L1 4446 5047 -1099 * 1786 216 45 31 chr13 33900427 33900875 -67972294 + LTR40c LTR ERVL 8 461 -4 449 267 50 40 chr13 33900892 33901117 -67972052 - L1MC5 LINE L1 -534 7493 7236 994 151 7 0 chr13 33902461 33902613 -67970556 + FRAM SINE Alu 21 173 -3 498 161 23 11 chr13 33902613 33902700 -67970469 + polypurine Low_complexity Low_complexity 1 88 0 520 173 6 40 chr13 33902707 33902880 -67970289 + GA-rich Low_complexity Low_complexity 3 169 0 389 137 0 11 chr13 33902872 33902967 -67970202 + (CAG)n Simple_repeat Simple_repeat 2 95 0 * 360 133 0 0 chr13 33902971 33903031 -67970138 + (GGA)n Simple_repeat Simple_repeat 3 62 0 5971 166 77 28 chr13 33903044 33903127 -67970042 + MER21A-int LTR ERV1 1231 1309 -2882 861 165 0 8 chr13 33903127 33903260 -67969909 + FLAM_C SINE Alu 1 132 -1 5971 166 77 28 chr13 33903260 33904306 -67968863 + MER21A-int LTR ERV1 1309 2415 -1776 * 7436 140 34 51 chr13 33904286 33904926 -67968243 + MER21A-int LTR ERV1 2841 3491 -700 2309 84 3 0 chr13 33904926 33905223 -67967946 + AluY SINE Alu 1 298 -13 7436 140 34 51 chr13 33905223 33905657 -67967512 + MER21A-int LTR ERV1 3491 3890 -301 1589 188 0 33 chr13 33905657 33905960 -67967209 + AluJb SINE Alu 1 293 -19 7436 140 34 51 chr13 33905960 33906207 -67966962 + MER21A-int LTR ERV1 3890 4140 -51 551 122 41 0 chr13 33906281 33906379 -67966790 + MER21A LTR ERV1 1 102 -829 2140 116 3 0 chr13 33906379 33906664 -67966505 + AluSx SINE Alu 1 286 -26 249 196 0 0 chr13 33906664 33906720 -67966449 + (TA)n Simple_repeat Simple_repeat 1 56 0 1042 178 163 15 chr13 33906736 33907068 -67966101 + MER21B LTR ERV1 93 494 -369 297 224 0 0 chr13 33907079 33907137 -67966032 - MLT1D LTR MaLR -52 453 396 3195 75 19 0 chr13 33907146 33907562 -67965607 + MER41A LTR ERV1 1 424 -130 2110 143 0 0 chr13 33907562 33907869 -67965300 - AluSx SINE Alu -5 307 1 1811 115 4 4 chr13 33907870 33908122 -67965047 + AluSq SINE Alu 50 301 -12 720 102 0 74 chr13 33908122 33908230 -67964939 + MER30 DNA MER1_type 131 230 0 1284 125 103 22 chr13 33908263 33908487 -67964682 - MLT1D LTR MaLR -261 244 3 2031 115 14 3 chr13 33908516 33908802 -67964367 - AluSc SINE Alu -20 289 1 4361 155 27 10 chr13 33909163 33910270 -67962899 - L1PB1 LINE L1 -68 6083 4753 2179 112 3 3 chr13 33910270 33910565 -67962604 - AluSx SINE Alu -17 295 1 4361 155 27 10 chr13 33910565 33911196 -67961973 - L1PB1 LINE L1 -1398 4753 4134 3952 90 15 43 chr13 33911196 33911229 -67961940 - MER4B LTR ERV1 -24 586 554 2205 115 0 0 chr13 33911229 33911515 -67961654 + AluSx SINE Alu 1 286 -26 3952 90 15 43 chr13 33911515 33912084 -67961085 - MER4B LTR ERV1 -56 554 1 2416 87 0 0 chr13 33912238 33912538 -67960631 - AluY SINE Alu -11 300 1 1302 200 12 4 chr13 33912748 33912998 -67960171 + L1MB7 LINE L1 4853 5104 -1042 1767 237 36 48 chr13 33913000 33913439 -67959730 - MLT2B3 LTR ERVL -3 551 118 2063 128 7 7 chr13 33913439 33913735 -67959434 - AluSx SINE Alu -16 296 1 1007 120 0 0 chr13 33913746 33913879 -67959290 - AluSq/x SINE Alu -179 133 1 795 127 16 0 chr13 33913879 33914005 -67959164 - MLT2B3 LTR ERVL -387 128 1 4331 189 46 15 chr13 33914008 33915051 -67958118 + L1MB7 LINE L1 5103 6184 0 1980 128 3 20 chr13 33915058 33915355 -67957814 + AluJo SINE Alu 1 292 -20 2348 102 0 0 chr13 33915488 33915791 -67957378 + AluSc SINE Alu 1 303 -6 2301 58 3 17 chr13 33916102 33916396 -67956773 + AluY SINE Alu 1 290 -21 1034 218 0 0 chr13 33916558 33916732 -67956437 - FAM SINE Alu -1 174 1 22 56 0 0 chr13 33917972 33918008 -67955161 + AT_rich Low_complexity Low_complexity 1 36 0 557 101 0 0 chr13 33918124 33918193 -67954976 - AluSq/x SINE Alu -210 103 35 1390 122 0 0 chr13 33918193 33918381 -67954788 + AluSq SINE Alu 111 298 -15 480 114 0 9 chr13 33918391 33918610 -67954559 + AluJb SINE Alu 1 306 -6 2196 113 3 13 chr13 33918900 33919210 -67953959 - AluSx SINE Alu -5 307 1 879 271 61 4 chr13 33919245 33919492 -67953677 + MIR SINE MIR 2 262 0 3305 87 24 0 chr13 33920537 33920961 -67952208 + MER57B LTR ERV1 1 434 0 237 327 82 18 chr13 33920961 33921071 -67952098 + MIR SINE MIR 35 151 -111 207 0 0 0 chr13 33921196 33921219 -67951950 + (A)n Simple_repeat Simple_repeat 1 23 0 2393 80 13 0 chr13 33921691 33921993 -67951176 - AluSx SINE Alu -6 306 1 322 324 9 9 chr13 33924981 33925089 -67948080 - L2 LINE L2 0 3313 3206 2382 81 16 7 chr13 33925323 33925633 -67947536 - AluSq SINE Alu 0 313 1 255 286 60 0 chr13 33925875 33925959 -67947210 + MARNA DNA Mariner 90 178 -408 * 320 266 79 22 chr13 33925900 33926039 -67947130 - MARNA DNA Mariner -120 466 320 306 172 156 0 chr13 33926044 33926108 -67947061 + MARNA DNA Mariner 473 546 -40 2356 100 0 3 chr13 33926279 33926590 -67946579 - AluSx SINE Alu -2 310 1 332 336 49 28 chr13 33926616 33926759 -67946410 - MLT1K LTR MaLR -322 266 121 1664 170 4 0 chr13 33927976 33928241 -67944928 - AluJb SINE Alu -45 267 2 21 0 0 0 chr13 33928309 33928330 -67944839 + AT_rich Low_complexity Low_complexity 1 21 0 2214 92 0 7 chr13 33928429 33928737 -67944432 + AluSg SINE Alu 1 306 0 318 244 8 84 chr13 33929008 33929127 -67944042 + MIR SINE MIR 61 170 -92 2244 106 0 3 chr13 33929304 33929597 -67943572 - AluSg SINE Alu -6 304 13 2186 120 0 0 chr13 33929822 33930114 -67943055 + AluSx SINE Alu 4 295 -17 2254 100 7 3 chr13 33930116 33930425 -67942744 + AluSg SINE Alu 1 310 0 988 191 0 12 chr13 33930577 33930745 -67942424 - FRAM SINE Alu 0 166 1 934 162 0 7 chr13 33930777 33930925 -67942244 + AluJo SINE Alu 5 151 -161 589 265 110 15 chr13 33931210 33931410 -67941759 - MIR SINE MIR -41 221 3 1417 159 0 0 chr13 33931446 33931666 -67941503 - AluJb SINE Alu -9 303 84 2268 101 16 3 chr13 33932388 33932696 -67940473 - AluSx SINE Alu 0 312 1 2235 97 0 3 chr13 33934071 33934379 -67938790 - AluY SINE Alu -4 307 1 472 173 113 125 chr13 33934483 33934507 -67938662 - MIR SINE MIR 0 262 239 2213 100 0 3 chr13 33934507 33934796 -67938373 - AluSg SINE Alu -20 290 3 472 173 113 125 chr13 33934796 33934880 -67938289 - MIR SINE MIR -23 239 156 306 0 0 0 chr13 33934880 33934914 -67938255 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2234 111 0 7 chr13 33934916 33935214 -67937955 - AluSq SINE Alu -14 299 4 472 173 113 125 chr13 33935214 33935269 -67937900 - MIR SINE MIR -107 155 97 1606 166 14 38 chr13 33935302 33935421 -67937748 + AluJb SINE Alu 1 121 -191 216 97 0 0 chr13 33935421 33935452 -67937717 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1606 166 14 38 chr13 33935452 33935621 -67937548 + AluJb SINE Alu 121 282 -30 2497 60 0 13 chr13 33935622 33935924 -67937245 + AluSp SINE Alu 1 298 -15 716 147 184 7 chr13 33936122 33936258 -67936911 + FRAM SINE Alu 7 166 -10 2297 109 0 0 chr13 33936365 33936668 -67936501 + AluSx SINE Alu 1 303 -9 214 319 0 42 chr13 33937014 33937086 -67936083 + MIR3 SINE MIR 109 177 -31 967 192 98 0 chr13 33937324 33937517 -67935652 + MIR SINE MIR 9 220 -42 80 21 0 0 chr13 33937558 33937652 -67935517 + AT_rich Low_complexity Low_complexity 1 94 0 2892 97 8 3 chr13 33938486 33938859 -67934310 - THE1C LTR MaLR 0 375 1 2351 113 0 0 chr13 33938919 33939230 -67933939 - AluSx SINE Alu -1 311 1 332 0 47 0 chr13 33939616 33939659 -67933510 + (TTTTG)n Simple_repeat Simple_repeat 1 45 0 939 132 0 0 chr13 33939660 33939796 -67933373 - AluJo/FRAM SINE Alu -32 280 145 229 146 0 125 chr13 33939797 33939845 -67933324 - AluJo/FRAM SINE Alu -135 168 127 827 165 13 106 chr13 33939850 33940087 -67933082 - L1MC5 LINE L1 -50 7911 7697 2065 112 3 62 chr13 33940162 33940340 -67932829 - AluSx SINE Alu -10 302 150 2263 100 0 0 chr13 33940340 33940631 -67932538 - AluSc SINE Alu -4 305 15 2065 112 3 62 chr13 33940631 33940773 -67932396 - AluSx SINE Alu -162 150 1 2143 115 0 10 chr13 33940897 33941220 -67931949 + AluSx SINE Alu 6 312 0 1772 119 112 7 chr13 33941230 33941507 -67931662 + AluSg SINE Alu 1 306 -4 1605 175 6 32 chr13 33941551 33941865 -67931304 + AluJb SINE Alu 6 311 -1 2456 68 0 0 chr13 33942505 33942824 -67930345 + AluY SINE Alu 1 319 0 187 292 69 0 chr13 33942906 33942978 -67930191 + L2 LINE L2 1358 1434 -1880 543 83 52 42 chr13 33943291 33943387 -67929782 - L1PA13 LINE L1 0 6163 6067 215 319 33 22 chr13 33943447 33943538 -67929631 + L2 LINE L2 1844 1935 -1379 254 341 32 0 chr13 33943553 33943676 -67929493 - L1ME3 LINE L1 -9 6153 6027 1899 213 23 19 chr13 33943782 33944214 -67928955 - L1ME1 LINE L1 -95 6071 5638 674 262 35 0 chr13 33944217 33944419 -67928750 + L1MD3 LINE L1 7787 7995 0 21 0 0 0 chr13 33944510 33944531 -67928638 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 33944665 33944686 -67928483 + AT_rich Low_complexity Low_complexity 1 21 0 257 279 103 44 chr13 33945971 33946083 -67927086 + MIR SINE MIR 108 232 -30 2174 81 0 14 chr13 33946083 33946396 -67926773 + AluY SINE Alu 2 310 0 257 279 103 44 chr13 33946396 33946418 -67926751 + MIR SINE MIR 232 251 -11 2299 119 0 0 chr13 33946604 33946914 -67926255 - AluSg SINE Alu 0 310 1 485 182 50 10 chr13 33946918 33947017 -67926152 + MER5A DNA MER1_type 2 104 -85 23 33 0 0 chr13 33947368 33947398 -67925771 + AT_rich Low_complexity Low_complexity 1 30 0 2251 100 7 0 chr13 33947398 33947689 -67925480 - AluSc SINE Alu -16 293 1 1965 153 78 21 chr13 33947877 33948286 -67924883 + L1MC3 LINE L1 7337 7772 -13 2116 115 3 3 chr13 33948286 33948582 -67924587 + AluSx SINE Alu 1 296 -16 1965 153 78 21 chr13 33948582 33948596 -67924573 + L1MC3 LINE L1 7772 7784 -1 2486 50 3 10 chr13 33948604 33948906 -67924263 + AluY SINE Alu 1 300 -11 6871 131 34 51 chr13 33950074 33950608 -67922561 - Tigger3b DNA MER2_type -1797 1231 689 2490 69 0 7 chr13 33950608 33950911 -67922258 + AluSc SINE Alu 1 301 -8 6871 131 34 51 chr13 33950911 33951323 -67921846 - Tigger3b DNA MER2_type -2339 689 271 680 85 0 11 chr13 33951323 33951417 -67921752 + HY4 scRNA scRNA 1 93 0 6871 131 34 51 chr13 33951417 33951439 -67921730 - Tigger3b DNA MER2_type -2757 271 250 2095 127 3 0 chr13 33951439 33951730 -67921439 + AluSx SINE Alu 1 292 -20 6871 131 34 51 chr13 33951730 33952012 -67921157 - Tigger3b DNA MER2_type -2778 250 1 2062 86 0 96 chr13 33952036 33952360 -67920809 + AluY SINE Alu 1 293 -18 1418 158 70 40 chr13 33952627 33952899 -67920270 + AluJb SINE Alu 13 292 -20 2301 97 3 0 chr13 33953026 33953324 -67919845 + AluSp SINE Alu 1 299 -14 202 223 74 91 chr13 33953421 33953513 -67919656 + L3 LINE CR1 996 1087 -490 2024 130 0 23 chr13 33953513 33953814 -67919355 - AluSx SINE Alu -17 295 2 202 223 74 91 chr13 33953814 33953842 -67919327 + L3 LINE CR1 1087 1114 -463 2587 58 0 6 chr13 33953843 33954154 -67919015 + AluY SINE Alu 1 309 -2 273 317 109 35 chr13 33954403 33954605 -67918564 + L3 LINE CR1 1247 1463 -114 1692 196 47 28 chr13 33954607 33954647 -67918522 - MER74A LTR ERVL 0 558 520 1518 211 121 8 chr13 33954647 33955003 -67918166 - MSTD LTR MaLR 0 396 1 1692 196 47 28 chr13 33955003 33955325 -67917844 - MER74A LTR ERVL -38 520 189 2495 81 0 0 chr13 33955523 33955833 -67917336 - AluY SINE Alu -1 310 1 1517 196 32 15 chr13 33955974 33956315 -67916854 - L1M4 LINE L1 -1103 5043 4697 21 0 0 0 chr13 33956322 33956343 -67916826 + AT_rich Low_complexity Low_complexity 1 21 0 2118 137 0 0 chr13 33956344 33956643 -67916526 + AluSx SINE Alu 1 299 -13 2548 184 91 13 chr13 33956644 33957307 -67915862 + L1ME2 LINE L1 5162 5873 -293 2529 69 0 0 chr13 33957524 33957829 -67915340 + AluY SINE Alu 1 305 -6 1093 125 0 7 chr13 33957830 33957982 -67915187 + AluSg/x SINE Alu 134 284 -28 180 0 0 0 chr13 33957987 33958007 -67915162 + (CAA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr13 33958036 33958067 -67915102 + AT_rich Low_complexity Low_complexity 1 31 0 1769 172 31 0 chr13 33958420 33958711 -67914458 - AluJb SINE Alu -12 300 1 2366 82 7 0 chr13 33958907 33959198 -67913971 + AluSp SINE Alu 1 293 -20 1378 127 174 15 chr13 33959204 33959463 -67913706 + AluSg SINE Alu 1 300 0 312 239 14 99 chr13 33959464 33959606 -67913563 + L1ME2 LINE L1 6025 6154 -10 246 260 13 13 chr13 33959641 33959718 -67913451 + L1MC4 LINE L1 7826 7902 -140 1904 111 41 4 chr13 33959982 33960252 -67912917 - AluSg SINE Alu -30 280 1 2143 89 44 10 chr13 33960543 33960836 -67912333 + AluSc SINE Alu 1 303 -6 1500 152 9 84 chr13 33961094 33961232 -67911937 + AluJo SINE Alu 1 148 -164 2426 54 0 7 chr13 33961232 33961527 -67911642 + AluY SINE Alu 1 293 -18 1500 152 9 84 chr13 33961527 33961710 -67911459 + AluJo SINE Alu 148 298 -14 497 282 178 0 chr13 33962067 33962241 -67910928 - MIR SINE MIR -17 245 41 973 126 0 38 chr13 33962317 33962476 -67910693 - FAM SINE Alu -19 156 4 1771 161 3 14 chr13 33962490 33962781 -67910388 - AluJb SINE Alu -24 288 1 1342 181 261 26 chr13 33963535 33964118 -67909051 - SATR1 Satellite Satellite -3 1834 1389 2381 86 3 3 chr13 33964118 33964421 -67908748 + AluY SINE Alu 1 303 -8 1342 181 261 26 chr13 33964421 33965020 -67908149 - SATR1 Satellite Satellite -448 1389 1 1951 115 3 30 chr13 33965072 33965196 -67907973 + AluSq SINE Alu 13 139 -174 2132 121 24 0 chr13 33965196 33965493 -67907676 + AluSg SINE Alu 1 304 -6 1951 115 3 30 chr13 33965493 33965663 -67907506 + AluSq SINE Alu 139 299 -14 583 187 8 24 chr13 33965665 33965788 -67907381 - FLAM_C SINE Alu -22 121 1 2139 102 20 0 chr13 33965850 33966143 -67907026 - AluSp SINE Alu -14 299 1 1241 208 77 0 chr13 33966418 33966678 -67906491 + AluJb SINE Alu 1 280 -32 390 42 0 0 chr13 33966678 33966726 -67906443 + (TAAA)n Simple_repeat Simple_repeat 4 51 0 1003 177 6 0 chr13 33967325 33967489 -67905680 + FAM SINE Alu 1 165 -10 2043 114 47 0 chr13 33967713 33968010 -67905159 + AluSq SINE Alu 3 313 0 2098 141 3 0 chr13 33968143 33968447 -67904722 - AluSq SINE Alu -8 305 1 1769 152 0 48 chr13 33969050 33969360 -67903809 + AluJb SINE Alu 2 296 -16 1981 120 3 40 chr13 33969484 33969785 -67903384 + AluSx SINE Alu 1 290 -22 1105 277 30 38 chr13 33969938 33970306 -67902863 + MLT1J LTR MaLR 1 365 -146 780 181 289 17 chr13 33970306 33970538 -67902631 + SATR1 Satellite Satellite 158 452 -18 2834 194 18 29 chr13 33970672 33971225 -67901944 + MER74A LTR ERVL 3 549 -9 4197 116 54 18 chr13 33974221 33974903 -67898266 - Tigger3b DNA MER2_type -245 986 280 609 102 0 11 chr13 33974904 33974992 -67898177 + HY4 scRNA scRNA 4 90 -3 1876 162 7 0 chr13 33975025 33975315 -67897854 + AluSx SINE Alu 1 292 -20 412 153 42 0 chr13 33975335 33975407 -67897762 - LOR1-int LTR ERV1 -16 8104 8030 * 1833 103 44 4 chr13 33975406 33975678 -67897491 - LOR1-int LTR ERV1 -2056 6064 5782 * 9242 92 72 34 chr13 33975658 33976390 -67896779 - LOR1-int LTR ERV1 -2596 5524 4821 1755 154 4 0 chr13 33976390 33976643 -67896526 + AluSx SINE Alu 28 281 -31 230 0 33 0 chr13 33976646 33976676 -67896493 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 9242 92 72 34 chr13 33976676 33977351 -67895818 - LOR1-int LTR ERV1 -3300 4820 4048 2337 94 3 3 chr13 33977351 33977650 -67895519 - AluY SINE Alu -12 299 1 9242 92 72 34 chr13 33977650 33977763 -67895406 - LOR1-int LTR ERV1 -4072 4048 3941 2264 86 21 0 chr13 33977763 33978053 -67895116 - AluSx SINE Alu -15 297 2 2055 80 44 87 chr13 33978053 33978245 -67894924 - LOR1-int LTR ERV1 -4937 3183 2984 1731 152 7 18 chr13 33978245 33978522 -67894647 + AluSx SINE Alu 1 274 -38 258 32 0 0 chr13 33978530 33978561 -67894608 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2055 80 44 87 chr13 33978561 33978744 -67894425 - LOR1-int LTR ERV1 -5143 2977 2816 32087 107 16 66 chr13 33978750 33983641 -67889528 - L1PA8 LINE L1 -8 6164 1684 2242 126 0 0 chr13 33983641 33983942 -67889227 - AluSg SINE Alu -9 301 1 32087 107 16 66 chr13 33983942 33985539 -67887630 - L1PA8 LINE L1 -4488 1684 9 221 200 0 0 chr13 33985598 33985638 -67887531 + MER5A DNA MER1_type 9 48 -141 14770 94 74 46 chr13 33985783 33986210 -67886959 - LOR1b-int LTR ERV1 -5300 2820 2407 1898 143 58 0 chr13 33986210 33986503 -67886666 + AluSg SINE Alu 1 310 0 14770 94 74 46 chr13 33986503 33987559 -67885610 - LOR1b-int LTR ERV1 -5713 2407 1382 1845 120 88 7 chr13 33987559 33987843 -67885326 - AluSg SINE Alu -3 307 1 14770 94 74 46 chr13 33987843 33988536 -67884633 - LOR1b-int LTR ERV1 -6738 1382 558 2070 119 0 45 chr13 33988536 33988680 -67884489 + AluSg SINE Alu 1 125 -185 2575 47 0 7 chr13 33988680 33988977 -67884192 + AluY SINE Alu 1 295 -16 2070 119 0 45 chr13 33988977 33989143 -67884026 + AluSg SINE Alu 125 297 -13 14770 94 74 46 chr13 33989143 33989505 -67883664 - LOR1b-int LTR ERV1 -7562 558 208 374 39 19 0 chr13 33989505 33989557 -67883612 + (CA)n Simple_repeat Simple_repeat 2 54 0 2252 128 42 8 chr13 33989560 33989919 -67883250 - LOR1b-int LTR ERV1 -7749 371 1 2196 146 30 63 chr13 33989919 33990231 -67882938 - LOR1b LTR ERV1 0 461 165 2413 76 0 0 chr13 33990231 33990521 -67882648 - AluY SINE Alu -13 298 9 2196 146 30 63 chr13 33990521 33990639 -67882530 - LOR1b LTR ERV1 -296 165 45 3656 167 28 56 chr13 33990779 33991344 -67881825 + L1MB8 LINE L1 5403 5983 -195 2294 110 0 7 chr13 33991344 33991652 -67881517 + AluSx SINE Alu 1 306 -6 3656 167 28 56 chr13 33991652 33991813 -67881356 + L1MB8 LINE L1 5983 6107 -71 1920 167 10 10 chr13 33991813 33992125 -67881044 - AluJb SINE Alu 0 312 1 3656 167 28 56 chr13 33992125 33992195 -67880974 + L1MB8 LINE L1 6107 6177 -1 1319 167 50 89 chr13 33992656 33993055 -67880114 - MLT1B LTR MaLR 0 467 2 2318 123 0 0 chr13 33993079 33993389 -67879780 + AluSx SINE Alu 1 310 -2 235 230 204 80 chr13 33993504 33993617 -67879552 + MER5B DNA MER1_type 4 130 -48 4656 147 48 16 chr13 33993685 33994514 -67878655 - L1MC3 LINE L1 -11 7774 6919 276 161 71 0 chr13 33994519 33994575 -67878594 + MER5B DNA MER1_type 119 178 0 481 117 13 0 chr13 33995353 33995430 -67877739 + MER5A DNA MER1_type 1 78 -111 1073 171 6 0 chr13 33995430 33995605 -67877564 + FRAM SINE Alu 1 176 0 480 220 0 85 chr13 33995609 33995750 -67877419 + MER5A DNA MER1_type 61 189 0 314 175 0 32 chr13 33995886 33995949 -67877220 + L2 LINE L2 3196 3256 -16 198 91 0 0 chr13 33996001 33996034 -67877135 + (T)n Simple_repeat Simple_repeat 1 33 0 198 0 0 0 chr13 33996507 33996529 -67876640 + (AGCTG)n Simple_repeat Simple_repeat 3 24 0 241 156 111 0 chr13 33996641 33996686 -67876483 - Charlie8 DNA MER1_type -2227 190 141 3893 147 20 45 chr13 33996837 33997002 -67876167 + L1MB3 LINE L1 5445 5613 -570 2168 130 0 0 chr13 33997002 33997295 -67875874 + AluSx SINE Alu 1 293 -19 3893 147 20 45 chr13 33997295 33997878 -67875291 + L1MB3 LINE L1 5613 6174 -9 306 230 180 0 chr13 33997893 33997993 -67875176 - MIR SINE MIR -5 257 140 198 118 0 0 chr13 33997993 33998027 -67875142 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 297 0 0 0 chr13 33998026 33998059 -67875110 + (GA)n Simple_repeat Simple_repeat 1 33 0 1505 187 26 4 chr13 33998059 33998327 -67874842 - AluJo SINE Alu -37 275 2 729 238 0 0 chr13 33998334 33998481 -67874688 - FRAM SINE Alu -25 151 5 3439 200 57 22 chr13 33998486 33999346 -67873823 - L1ME1 LINE L1 -58 6108 5221 2275 92 0 0 chr13 33999414 33999719 -67873450 - AluY SINE Alu 0 305 1 1394 198 171 20 chr13 33999818 34000162 -67873007 - MSTD LTR MaLR 0 396 1 834 286 55 80 chr13 34000606 34001191 -67871978 + L2 LINE L2 463 1032 -2282 437 214 53 121 chr13 34001203 34001254 -67871915 - L1ME3A LINE L1 -13 6157 6104 994 139 0 61 chr13 34001254 34001434 -67871735 + L1MB5 LINE L1 6000 6168 -6 437 214 53 121 chr13 34001434 34001447 -67871722 - L1ME3A LINE L1 -66 6104 6092 2198 85 0 7 chr13 34001447 34001741 -67871428 + AluSc SINE Alu 1 292 -17 437 214 53 121 chr13 34001741 34001980 -67871189 - L1ME3A LINE L1 -78 6092 5797 1705 85 0 30 chr13 34002369 34002605 -67870564 + AluY SINE Alu 1 229 -82 1103 51 11 62 chr13 34002605 34002783 -67870386 - MER11A LTR ERVK -1002 264 1 297 75 0 0 chr13 34002792 34002832 -67870337 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 1916 142 10 0 chr13 34002850 34003138 -67870031 - AluJb SINE Alu -21 291 1 345 169 0 0 chr13 34003138 34003197 -67869972 + MSTD LTR MaLR 326 384 -12 182 235 161 25 chr13 34003205 34003286 -67869883 - L2 LINE L2 -175 3138 3047 876 261 23 29 chr13 34003383 34003689 -67869480 - L1ME2 LINE L1 -9 6155 5852 1183 180 0 5 chr13 34003710 34003916 -67869253 - AluJo SINE Alu -107 205 1 636 179 36 100 chr13 34003919 34003991 -67869178 - L1M4 LINE L1 -947 5199 5124 2054 124 13 0 chr13 34003991 34004297 -67868872 - AluSx SINE Alu -2 310 1 636 179 36 100 chr13 34004297 34004438 -67868731 - L1M4 LINE L1 -1022 5124 5002 2068 98 3 20 chr13 34004438 34004743 -67868426 - AluSg SINE Alu -6 304 5 636 179 36 100 chr13 34004743 34004779 -67868390 - L1M4 LINE L1 -1144 5002 4965 337 219 49 49 chr13 34004779 34004861 -67868308 - FRAM/FAM SINE Alu -85 81 1 1024 316 91 32 chr13 34004863 34005338 -67867831 - ERVL LTR ERVL -3924 1840 1338 2537 55 0 0 chr13 34006535 34006846 -67866323 + AluY SINE Alu 1 311 0 2218 103 0 0 chr13 34007441 34007742 -67865427 + AluSq SINE Alu 3 303 -10 1213 247 83 53 chr13 34008109 34008215 -67864954 - L1ME3 LINE L1 -220 6336 6235 2719 137 41 33 chr13 34008215 34008703 -67864466 + LTR22B LTR ERVK 1 492 0 1213 247 83 53 chr13 34008703 34008925 -67864244 - L1ME3 LINE L1 -321 6235 6021 1564 197 123 42 chr13 34008925 34009190 -67863979 - MLT1C LTR MaLR 0 467 152 2188 109 3 0 chr13 34009190 34009492 -67863677 - AluSq SINE Alu -10 303 1 1564 197 123 42 chr13 34009492 34009658 -67863511 - MLT1C LTR MaLR -315 152 1 1213 247 83 53 chr13 34009658 34009816 -67863353 - L1ME3 LINE L1 -535 6021 5869 2339 73 0 3 chr13 34009816 34010116 -67863053 - AluY SINE Alu -10 301 3 1213 247 83 53 chr13 34010116 34010327 -67862842 - L1ME3 LINE L1 -687 5869 5613 1362 171 19 31 chr13 34010390 34010647 -67862522 - AluJb SINE Alu -58 254 1 308 273 69 12 chr13 34010684 34010967 -67862202 - L1ME3 LINE L1 -3775 2765 2471 1983 129 0 3 chr13 34011369 34011663 -67861506 + AluSx SINE Alu 1 293 -19 2048 117 0 0 chr13 34011665 34011993 -67861176 + AluSc SINE Alu 1 328 0 704 279 107 95 chr13 34011995 34012085 -67861084 - L1ME3 LINE L1 -4379 2162 2075 1437 212 6 10 chr13 34012085 34012396 -67860773 - AluJo SINE Alu -2 310 1 704 279 107 95 chr13 34012396 34012447 -67860722 - L1ME3 LINE L1 -4466 2075 2026 1973 119 0 17 chr13 34012447 34012749 -67860420 + AluSx SINE Alu 1 297 -15 704 279 107 95 chr13 34012749 34012849 -67860320 - L1ME3 LINE L1 -4515 2026 1929 1713 178 13 3 chr13 34012849 34013147 -67860022 - AluJb SINE Alu -11 301 1 704 279 107 95 chr13 34013147 34013742 -67859427 - L1ME3 LINE L1 -4612 1929 1224 2124 117 3 0 chr13 34014359 34014666 -67858503 + AluSg SINE Alu 1 308 -2 334 203 14 212 chr13 34014802 34014960 -67858209 + MER5B DNA MER1_type 1 104 -74 2205 101 0 0 chr13 34014960 34015258 -67857911 - AluSx SINE Alu -14 298 1 334 203 14 212 chr13 34015258 34015321 -67857848 + MER5B DNA MER1_type 104 178 0 897 147 0 0 chr13 34015383 34015512 -67857657 + FLAM_C SINE Alu 1 129 -4 692 213 21 0 chr13 34015525 34015666 -67857503 + MLT1B LTR MaLR 1 144 -246 1795 119 22 35 chr13 34015826 34016138 -67857031 - AluJo SINE Alu -4 308 1 273 236 0 0 chr13 34016172 34016227 -67856942 + L2 LINE L2 3210 3264 -8 321 245 174 11 chr13 34016701 34016813 -67856356 - MIR SINE MIR -72 136 36 225 0 0 0 chr13 34017538 34017563 -67855606 + (T)n Simple_repeat Simple_repeat 1 25 0 1276 50 12 0 chr13 34017578 34017738 -67855431 - AluY SINE Alu -149 162 1 2156 63 16 16 chr13 34018017 34018320 -67854849 + AluY SINE Alu 1 303 -8 2149 125 0 0 chr13 34018378 34018689 -67854480 - AluSx SINE Alu -1 311 1 430 313 82 13 chr13 34019041 34019268 -67853901 + MIR SINE MIR 15 262 0 2141 107 0 7 chr13 34019625 34019935 -67853234 + AluSg1 SINE Alu 1 308 -1 1013 147 18 6 chr13 34020512 34020682 -67852487 - MER5A DNA MER1_type -13 176 5 451 289 101 7 chr13 34020685 34020834 -67852335 + L2 LINE L2 2605 2767 -547 1010 299 107 13 chr13 34020892 34021286 -67851883 + L2 LINE L2 532 962 -2352 1629 126 3 83 chr13 34021290 34021624 -67851545 - MER4A LTR ERV1 -21 643 261 685 111 0 10 chr13 34021624 34021723 -67851446 - MER4A LTR ERV1 -566 98 1 423 288 245 0 chr13 34021725 34021958 -67851211 + L2 LINE L2 967 1256 -2058 1349 173 38 125 chr13 34021978 34022378 -67850791 - MLT1A1 LTR MaLR 0 365 1 493 191 161 56 chr13 34022392 34022554 -67850615 + MER5A DNA MER1_type 11 189 0 331 281 117 12 chr13 34022595 34022766 -67850403 + L2 LINE L2 1318 1506 -1808 2023 115 30 0 chr13 34022766 34023061 -67850108 - AluSx SINE Alu -8 304 1 1077 145 0 6 chr13 34023346 34023512 -67849657 - AluSp SINE Alu -148 165 1 667 254 177 4 chr13 34023512 34023760 -67849409 + L2 LINE L2 2967 3257 -56 721 235 24 18 chr13 34024068 34024238 -67848931 + MLT1F LTR MaLR 19 189 -353 684 288 54 21 chr13 34024265 34024505 -67848664 + MLT1J LTR MaLR 3 250 -261 1841 146 0 10 chr13 34024569 34024863 -67848306 - AluSx SINE Alu -21 291 1 771 150 277 33 chr13 34024863 34025076 -67848093 + ORSL DNA AcHobo 7 271 -4 303 262 145 29 chr13 34025205 34025377 -67847792 - L2 LINE L2 -211 3061 2870 348 24 0 0 chr13 34025390 34025431 -67847738 + (TG)n Simple_repeat Simple_repeat 2 42 0 433 239 85 85 chr13 34025493 34025752 -67847417 - MER102b DNA MER1_type -17 324 66 2219 75 24 0 chr13 34026334 34026627 -67846542 + AluY SINE Alu 1 300 -11 777 128 0 0 chr13 34026639 34026748 -67846421 + FLAM_C SINE Alu 2 110 -33 186 43 0 0 chr13 34026760 34026783 -67846386 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 404 242 166 6 chr13 34027633 34027790 -67845379 - LTR33A LTR ERVL -44 479 298 4304 156 84 82 chr13 34028128 34028480 -67844689 + L1MC3 LINE L1 6629 6979 -806 2162 116 0 0 chr13 34028480 34028783 -67844386 + AluSx SINE Alu 1 303 -9 4304 156 84 82 chr13 34028783 34028915 -67844254 + L1MC3 LINE L1 6979 7109 -676 258 323 0 0 chr13 34028915 34029008 -67844161 + MLT1F1 LTR MaLR 33 125 -442 4304 156 84 82 chr13 34029008 34029584 -67843585 + L1MC3 LINE L1 7109 7784 -1 2009 134 0 3 chr13 34029599 34029898 -67843271 - AluSx SINE Alu -14 298 1 1392 170 130 4 chr13 34030269 34030522 -67842647 + AluJo SINE Alu 4 288 -14 2143 109 3 0 chr13 34030611 34030913 -67842256 - AluSx SINE Alu -9 303 1 667 226 75 0 chr13 34031506 34031652 -67841517 + MIR SINE MIR 106 262 0 389 283 66 0 chr13 34031650 34031756 -67841413 - MIR3 SINE MIR -46 162 50 * 2592 90 16 19 chr13 34031800 34032165 -67841004 - THE1B LTR MaLR 0 364 1 1261 85 0 6 chr13 34032237 34032401 -67840768 + AluSq SINE Alu 1 163 -150 33 0 0 0 chr13 34032401 34032434 -67840735 + AT_rich Low_complexity Low_complexity 1 33 0 428 301 46 20 chr13 34032713 34032866 -67840303 + L1 LINE L1 3312 3468 -2678 224 239 0 0 chr13 34033292 34033338 -67839831 + A-rich Low_complexity Low_complexity 4 49 0 2207 142 65 70 chr13 34034291 34034749 -67838420 + MER31B LTR ERV1 3 458 -8 2165 115 3 0 chr13 34034976 34035288 -67837881 - AluSq SINE Alu 0 313 1 1589 121 4 12 chr13 34035290 34035539 -67837630 - AluJb SINE Alu -8 304 58 1287 200 108 53 chr13 34035546 34035967 -67837202 - MER66A LTR ERV1 -16 462 99 1611 162 31 45 chr13 34036035 34036066 -67837103 - MER66A-int LTR ERV1 -1 6675 6645 2283 98 0 0 chr13 34036066 34036371 -67836798 - AluSq SINE Alu -8 305 1 1611 162 31 45 chr13 34036371 34036629 -67836540 - MER66A-int LTR ERV1 -31 6645 6390 * 9161 190 82 106 chr13 34036618 34037257 -67835912 - MER66A-int LTR ERV1 -1735 4941 4288 2336 88 0 0 chr13 34037257 34037562 -67835607 + AluSc SINE Alu 1 305 -4 9161 190 82 106 chr13 34037562 34037865 -67835304 - MER66A-int LTR ERV1 -2388 4288 3979 2112 108 3 13 chr13 34037865 34038179 -67834990 - AluSx SINE Alu 0 312 2 9161 190 82 106 chr13 34038179 34038677 -67834492 - MER66A-int LTR ERV1 -2697 3979 3470 360 0 0 0 chr13 34038677 34038717 -67834452 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 1689 168 14 0 chr13 34038717 34038997 -67834172 - AluJb SINE Alu -28 284 1 9161 190 82 106 chr13 34038997 34039191 -67833978 - MER66A-int LTR ERV1 -3205 3471 3274 242 54 0 27 chr13 34039191 34039228 -67833941 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1943 135 0 0 chr13 34039230 34039518 -67833651 - AluSq SINE Alu -25 288 1 9161 190 82 106 chr13 34039518 34040551 -67832618 - MER66A-int LTR ERV1 -3403 3273 2333 4161 189 67 23 chr13 34040536 34042470 -67830699 - MER66A-int LTR ERV1 -4507 2169 65 * 1509 209 85 79 chr13 34042615 34043157 -67830012 - MER66A LTR ERV1 0 478 97 430 277 69 50 chr13 34043158 34043360 -67829809 - MIR SINE MIR -27 235 30 2400 54 0 7 chr13 34044738 34045036 -67828133 + AluY SINE Alu 1 296 -15 1887 187 9 11 chr13 34045226 34045320 -67827849 + MER7A DNA MER2_type 1 94 -2944 2049 99 22 22 chr13 34045320 34045633 -67827536 - AluSq SINE Alu 0 313 1 1887 187 9 11 chr13 34045633 34045886 -67827283 + MER7A DNA MER2_type 94 345 -1 1963 184 36 69 chr13 34046034 34046130 -67827039 + L1MC5 LINE L1 6697 6795 -1194 1490 163 7 48 chr13 34046130 34046263 -67826906 + AluJb SINE Alu 1 138 -174 1939 54 0 65 chr13 34046263 34046542 -67826627 + AluY SINE Alu 40 300 -11 1490 163 7 48 chr13 34046542 34046702 -67826467 + AluJb SINE Alu 138 282 -30 186 43 0 0 chr13 34046710 34046733 -67826436 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1963 184 36 69 chr13 34046733 34047208 -67825961 + L1MC5 LINE L1 6802 7256 -733 1771 212 71 77 chr13 34047209 34047514 -67825655 + L1MC5 LINE L1 7182 7487 -474 221 0 35 0 chr13 34047514 34047543 -67825626 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 1771 212 71 77 chr13 34047543 34047982 -67825187 + L1MC5 LINE L1 7487 7922 -39 2035 111 6 35 chr13 34048007 34048322 -67824847 + AluSx SINE Alu 1 306 -6 567 123 18 18 chr13 34048327 34048441 -67824728 + GA-rich Low_complexity Low_complexity 4 117 0 417 194 140 0 chr13 34048798 34048891 -67824278 - MER91C DNA MER1_type 0 140 35 2266 78 0 3 chr13 34049038 34049333 -67823836 - AluSg SINE Alu -16 294 1 338 200 95 95 chr13 34049410 34049515 -67823654 - MLT1J2 LTR MaLR 0 450 346 226 265 0 0 chr13 34049638 34049687 -67823482 - MLT1I LTR MaLR -243 166 118 1991 201 19 17 chr13 34050204 34050617 -67822552 - MLT2D LTR ERVL 0 414 1 209 270 90 34 chr13 34052101 34052190 -67820979 + MER5A DNA MER1_type 65 158 -31 * 381 131 16 0 chr13 34052130 34052191 -67820978 - MER5A DNA MER1_type -86 103 42 206 349 58 0 chr13 34052567 34052653 -67820516 + MIR SINE MIR 52 142 -66 727 169 7 44 chr13 34052700 34052836 -67820333 - AluJo SINE Alu -176 136 6 21 0 0 0 chr13 34052842 34052863 -67820306 + AT_rich Low_complexity Low_complexity 1 21 0 202 310 0 0 chr13 34052867 34052938 -67820231 + MIR SINE MIR 143 213 -49 463 273 8 8 chr13 34053681 34053809 -67819360 + MIR SINE MIR 23 150 -112 1474 123 30 30 chr13 34054168 34054403 -67818766 + MER46A DNA MER2_type 2 236 0 853 89 9 0 chr13 34054409 34054521 -67818648 - AluSg/x SINE Alu -19 291 179 963 249 118 33 chr13 34054537 34054902 -67818267 + MLT1L LTR MaLR 194 589 -26 2394 78 10 3 chr13 34055697 34055993 -67817176 + AluSq SINE Alu 1 298 -15 493 287 46 69 chr13 34056158 34056461 -67816708 + MLT1I LTR MaLR 107 402 -7 317 175 30 24 chr13 34056466 34056557 -67816612 + MLT1F1 LTR MaLR 485 592 -3 409 255 87 91 chr13 34056564 34056862 -67816307 - MLT1K LTR MaLR -109 479 183 267 234 19 103 chr13 34056926 34057033 -67816136 - MLT1K LTR MaLR -62 526 429 877 255 64 10 chr13 34057283 34057520 -67815649 + MIR SINE MIR 16 262 0 2253 109 0 10 chr13 34057891 34058202 -67814967 - AluSg1 SINE Alu -1 308 1 2253 100 0 10 chr13 34059033 34059332 -67813837 - AluSx SINE Alu -16 296 1 2402 105 0 3 chr13 34059463 34059809 -67813360 - AluSx SINE Alu 0 345 1 190 347 11 0 chr13 34059810 34059905 -67813264 - MIR SINE MIR -114 148 53 675 176 59 98 chr13 34059959 34060065 -67813104 + MER3 DNA MER1_type 13 109 -100 1451 135 67 74 chr13 34060065 34060362 -67812807 - AluJo SINE Alu -17 295 1 675 176 59 98 chr13 34060362 34060459 -67812710 + MER3 DNA MER1_type 109 208 -1 322 200 31 0 chr13 34060406 34060471 -67812698 - MER3 DNA MER1_type -106 103 37 * 2277 104 0 0 chr13 34060597 34060894 -67812275 - AluSg1 SINE Alu -12 297 1 2034 110 0 0 chr13 34061098 34061361 -67811808 + AluSx SINE Alu 35 297 -15 2213 103 34 0 chr13 34061362 34061654 -67811515 + AluSq SINE Alu 2 303 -10 568 301 6 0 chr13 34062310 34062486 -67810683 + MIR SINE MIR 86 262 0 1069 131 6 6 chr13 34062536 34062712 -67810457 - L1PA10 LINE L1 -4 6164 5989 1135 133 0 0 chr13 34062715 34062914 -67810255 - AluSx SINE Alu 0 312 129 537 122 0 0 chr13 34062914 34062988 -67810181 - AluSx SINE Alu -230 82 9 2116 90 59 0 chr13 34063068 34063358 -67809811 - AluSc SINE Alu 0 309 3 296 347 33 20 chr13 34063440 34063590 -67809579 - L2 LINE L2 0 3313 3162 973 165 0 13 chr13 34063856 34064014 -67809155 - FRAM SINE Alu -10 156 1 318 333 93 13 chr13 34064310 34064460 -67808709 - MIR3 SINE MIR -28 180 19 21 95 0 0 chr13 34064491 34064554 -67808615 + AT_rich Low_complexity Low_complexity 1 63 0 207 139 0 0 chr13 34066086 34066122 -67807047 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 637 168 64 163 chr13 34066143 34066194 -67806975 - MLT1A1 LTR MaLR -17 348 294 2407 53 3 0 chr13 34066194 34066512 -67806657 - AluY SINE Alu 0 319 1 637 168 64 163 chr13 34066512 34066662 -67806507 - MLT1A1 LTR MaLR -71 294 171 227 194 0 0 chr13 34066660 34066696 -67806473 - MLT1A1 LTR MaLR -169 196 161 * 1001 184 0 0 chr13 34066724 34066882 -67806287 - FAM SINE Alu -14 171 14 767 217 6 6 chr13 34066885 34067042 -67806127 - MLT1A1 LTR MaLR -208 157 1 1575 96 5 18 chr13 34067639 34067859 -67805310 - AluSq SINE Alu -24 289 73 2457 63 7 3 chr13 34067859 34068158 -67805011 - AluY SINE Alu -10 301 1 652 93 0 0 chr13 34068158 34068244 -67804925 - AluSq SINE Alu -226 87 2 183 309 69 57 chr13 34068466 34068641 -67804528 - L2 LINE L2 -814 2500 2324 2156 115 3 32 chr13 34069335 34069648 -67803521 - AluSx SINE Alu -8 304 1 326 255 75 0 chr13 34069795 34069889 -67803280 + Charlie8 DNA MER1_type 88 188 -2229 180 0 0 0 chr13 34070026 34070046 -67803123 + (T)n Simple_repeat Simple_repeat 1 20 0 2279 99 3 10 chr13 34070118 34070420 -67802749 - AluSg SINE Alu -10 300 1 1945 70 62 37 chr13 34070597 34070904 -67802265 - AluSc SINE Alu 0 314 1 332 270 72 72 chr13 34071157 34071379 -67801790 - L2 LINE L2 -9 3304 3083 237 283 72 72 chr13 34072124 34072290 -67800879 + MLT1K LTR MaLR 413 578 -10 2205 106 17 3 chr13 34072702 34073003 -67800166 + AluSx SINE Alu 1 305 -7 2037 125 0 14 chr13 34073182 34073470 -67799699 + AluSx SINE Alu 1 284 -28 18665 106 5 51 chr13 34074448 34078170 -67794999 + L1PA14 LINE L1 2605 6143 -18 257 184 0 0 chr13 34078180 34078229 -67794940 + L1M LINE L1 5320 5368 -934 2021 131 3 10 chr13 34078231 34078528 -67794641 + AluSx SINE Alu 1 295 -17 2127 204 78 5 chr13 34078934 34079355 -67793814 + MER82 DNA MER2_type 202 653 0 671 141 8 41 chr13 34079481 34079602 -67793567 + FLAM_A SINE Alu 20 136 -6 309 346 56 26 chr13 34079602 34079836 -67793333 + L3b LINE CR1 1259 1499 -84 2121 132 7 0 chr13 34080290 34080600 -67792569 + AluSx SINE Alu 1 312 0 258 307 0 0 chr13 34081281 34081356 -67791813 + HsTC2 DNA Tc2 44 118 -1780 * 294 178 0 0 chr13 34081354 34081399 -67791770 + HsTC2 DNA Tc2 1242 1286 -612 185 376 0 0 chr13 34082678 34082787 -67790382 - MIR SINE MIR -134 128 20 837 222 64 5 chr13 34083324 34083527 -67789642 + MER20 DNA MER1_type 1 215 -4 565 257 47 34 chr13 34083605 34083806 -67789363 - MIR SINE MIR -14 248 44 267 193 0 0 chr13 34083955 34084043 -67789126 + (TG)n Simple_repeat Simple_repeat 1 88 0 3626 241 69 35 chr13 34084923 34087019 -67786150 + L1M4 LINE L1 795 3076 -3568 683 217 71 25 chr13 34088391 34088631 -67784538 - L1ME4a LINE L1 -7 6114 5864 356 279 88 7 chr13 34088696 34088832 -67784337 - MIR SINE MIR -12 250 104 1706 163 30 30 chr13 34089297 34089665 -67783504 - L1MB8 LINE L1 -6 6172 5805 188 302 23 0 chr13 34089670 34089756 -67783413 + MIR SINE MIR 166 253 -9 1694 141 0 15 chr13 34090300 34090563 -67782606 + AluJo SINE Alu 38 296 -16 661 211 144 107 chr13 34090802 34091148 -67782021 - MLT1H1 LTR MaLR -7 548 190 180 322 0 44 chr13 34092817 34092907 -67780262 - L3 LINE CR1 -74 1503 1418 391 293 153 0 chr13 34093152 34093302 -67779867 - MIR SINE MIR -70 192 20 2049 152 0 3 chr13 34093327 34093629 -67779540 - AluJb SINE Alu -10 302 2 248 276 58 23 chr13 34093797 34093884 -67779285 + MLT1H1 LTR MaLR 100 189 -366 251 235 44 96 chr13 34093903 34094039 -67779130 + MLT1H LTR MaLR 421 549 0 5250 175 111 13 chr13 34094661 34094740 -67778429 + Charlie1a DNA MER1_type 1 71 -2690 1819 171 0 16 chr13 34094740 34095045 -67778124 + AluJb SINE Alu 1 300 -12 5250 175 111 13 chr13 34095045 34095104 -67778065 + Charlie1a DNA MER1_type 71 123 -2638 2314 112 3 0 chr13 34095104 34095407 -67777762 - AluSg SINE Alu -6 304 1 5250 175 111 13 chr13 34095407 34096329 -67776840 + Charlie1a DNA MER1_type 123 1166 -289 1476 194 17 17 chr13 34097019 34097318 -67775851 + AluJo SINE Alu 1 299 -13 778 226 30 39 chr13 34097390 34097624 -67775545 - MIR SINE MIR -30 232 1 1361 128 56 7 chr13 34098106 34098394 -67774775 + Charlie1a DNA MER1_type 1154 1455 0 443 236 86 93 chr13 34099147 34099427 -67773742 - L1ME4a LINE L1 -248 5873 5596 1628 194 56 0 chr13 34099606 34099925 -67773244 - MER58B DNA MER1_type -1 340 4 373 310 58 26 chr13 34100467 34100693 -67772476 - L3 LINE CR1 -721 856 624 1808 138 48 17 chr13 34101009 34101298 -67771871 - AluJb SINE Alu -14 298 1 186 167 0 0 chr13 34101511 34101547 -67771622 + GA-rich Low_complexity Low_complexity 2 37 0 395 241 37 9 chr13 34101640 34101748 -67771421 - L2 LINE L2 -23 3290 3180 317 294 139 28 chr13 34101955 34102896 -67770273 - L2 LINE L2 -495 2819 1704 240 293 24 0 chr13 34103849 34103931 -67769238 + L2 LINE L2 2228 2311 -1003 423 242 79 53 chr13 34104124 34104215 -67768954 + MIR SINE MIR 48 135 -127 1801 175 91 26 chr13 34104215 34104633 -67768536 + MER65A LTR ERV1 1 445 0 423 242 79 53 chr13 34104633 34104731 -67768438 + MIR SINE MIR 135 242 -20 454 157 0 56 chr13 34106424 34106513 -67766656 - FLAM SINE Alu -15 128 45 277 189 0 0 chr13 34106540 34106593 -67766576 - Alu SINE Alu -252 56 4 318 276 71 31 chr13 34106894 34107021 -67766148 + MIR SINE MIR 15 146 -116 4159 116 42 11 chr13 34110557 34111279 -67761890 + Tigger3b DNA MER2_type 1 744 -487 366 288 178 52 chr13 34111421 34111730 -67761439 - L3b LINE CR1 -131 1452 1105 558 180 168 12 chr13 34112434 34112595 -67760574 + MER53 DNA DNA 4 189 0 2284 110 0 16 chr13 34112653 34112970 -67760199 + AluSx SINE Alu 1 312 0 305 264 27 55 chr13 34113013 34113123 -67760046 - L2 LINE L2 -7 3306 3200 214 301 78 10 chr13 34113251 34113354 -67759815 + MIR SINE MIR 81 190 -72 2247 103 0 0 chr13 34114130 34114422 -67758747 + AluSp SINE Alu 1 292 -21 21 0 0 0 chr13 34114425 34114446 -67758723 + AT_rich Low_complexity Low_complexity 1 21 0 249 338 142 0 chr13 34114912 34115060 -67758109 - MIR3 SINE MIR -36 172 4 23 0 0 0 chr13 34115785 34115808 -67757361 + AT_rich Low_complexity Low_complexity 1 23 0 1985 152 0 0 chr13 34115929 34116225 -67756944 - AluSx SINE Alu -14 298 3 592 314 105 15 chr13 34116405 34116510 -67756659 - L1ME LINE L1 -319 5802 5708 709 177 125 31 chr13 34116510 34116702 -67756467 - MER6B DNA MER2_type 0 210 1 592 314 105 15 chr13 34116702 34117064 -67756105 - L1ME LINE L1 -413 5708 5293 584 304 73 30 chr13 34117086 34117180 -67755989 - L1ME LINE L1 -927 5219 5130 1501 196 28 14 chr13 34117180 34117466 -67755703 + AluJb SINE Alu 1 290 -22 584 304 73 30 chr13 34117466 34118002 -67755167 - L1ME LINE L1 -1016 5130 4562 567 222 9 0 chr13 34118047 34118155 -67755014 + MER21B LTR ERV1 329 437 -426 477 0 0 0 chr13 34118168 34118221 -67754948 + (TA)n Simple_repeat Simple_repeat 1 53 0 3501 135 27 15 chr13 34118392 34118994 -67754175 + LTR38B LTR ERV1 1 609 -1 1802 152 7 11 chr13 34118994 34119270 -67753899 + AluJo SINE Alu 27 301 -11 222 61 61 0 chr13 34119291 34119340 -67753829 + (TTTA)n Simple_repeat Simple_repeat 3 54 0 501 312 38 38 chr13 34119383 34119646 -67753523 + L1ME4a LINE L1 5630 5892 -229 2094 120 3 10 chr13 34119807 34120115 -67753054 + AluSg SINE Alu 1 306 -4 24 0 0 0 chr13 34120163 34120187 -67752982 + AT_rich Low_complexity Low_complexity 1 24 0 469 344 134 30 chr13 34121866 34122184 -67750985 + L2 LINE L2 1925 2208 -1106 2523 74 0 3 chr13 34122184 34122495 -67750674 - AluY SINE Alu -1 310 1 469 344 134 30 chr13 34122495 34122883 -67750286 + L2 LINE L2 2208 2705 -609 857 214 105 68 chr13 34123381 34123792 -67749377 - MER67C LTR ERV1 -139 571 146 397 284 45 30 chr13 34126293 34126356 -67746813 + L2 LINE L2 3008 3069 -244 351 0 0 0 chr13 34126356 34126395 -67746774 + (CA)n Simple_repeat Simple_repeat 1 39 0 397 284 45 30 chr13 34126395 34126532 -67746637 + L2 LINE L2 3069 3211 -102 4443 21 0 0 chr13 34126769 34127284 -67745885 + L1PA3 LINE L1 5641 6155 0 2532 75 0 0 chr13 34127745 34128050 -67745119 - AluSq SINE Alu -8 305 1 195 265 20 0 chr13 34128468 34128517 -67744652 - MIR SINE MIR -110 152 103 1953 104 0 0 chr13 34129863 34130122 -67743047 - AluSg1 SINE Alu -2 307 49 1927 117 31 9 chr13 34130175 34130501 -67742668 + L1MA4 LINE L1 5963 6295 -5 32 0 0 0 chr13 34130646 34130678 -67742491 + AT_rich Low_complexity Low_complexity 1 32 0 207 279 16 16 chr13 34131173 34131234 -67741935 - L2 LINE L2 -32 3240 3180 1283 105 42 155 chr13 34131330 34131691 -67741478 + MER33 DNA MER1_type 5 324 0 465 226 250 43 chr13 34131882 34132090 -67741079 - MIR SINE MIR -2 260 10 446 124 58 0 chr13 34132178 34132299 -67740870 + GA-rich Low_complexity Low_complexity 2 129 0 2093 71 4 8 chr13 34133141 34133408 -67739761 - AluY SINE Alu -12 299 34 23 54 0 0 chr13 34133790 34133827 -67739342 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr13 34133910 34133940 -67739229 + AT_rich Low_complexity Low_complexity 1 30 0 388 61 0 30 chr13 34134678 34134744 -67738425 + (TA)n Simple_repeat Simple_repeat 2 65 0 224 256 26 13 chr13 34134845 34134923 -67738246 + (CATATA)n Simple_repeat Simple_repeat 2 80 0 428 282 90 27 chr13 34135268 34135456 -67737713 - MIR SINE MIR -12 250 51 207 182 0 0 chr13 34136475 34136508 -67736661 + polypyrimidine Low_complexity Low_complexity 2 34 0 1843 163 0 3 chr13 34136904 34137192 -67735977 + AluSx SINE Alu 1 287 -25 22 0 0 0 chr13 34137913 34137935 -67735234 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr13 34138071 34138101 -67735068 + (TA)n Simple_repeat Simple_repeat 2 31 0 406 305 66 73 chr13 34138144 34138583 -67734586 + MARNA DNA Mariner 125 560 -26 646 169 21 42 chr13 34138622 34138764 -67734405 + L1MB2 LINE L1 5953 6091 -80 233 245 75 0 chr13 34139651 34139704 -67733465 - L2 LINE L2 -4 3309 3253 327 25 0 0 chr13 34139882 34139922 -67733247 + (TG)n Simple_repeat Simple_repeat 1 40 0 1603 290 57 46 chr13 34139958 34140737 -67732432 - L2 LINE L2 -340 2974 2188 717 163 57 0 chr13 34141095 34141218 -67731951 + AluJb SINE Alu 5 134 -178 694 183 9 0 chr13 34141230 34141345 -67731824 + AluJb SINE Alu 103 218 -94 185 0 0 39 chr13 34141361 34141387 -67731782 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 325 284 49 10 chr13 34142137 34142239 -67730930 + L2 LINE L2 2948 3053 -219 241 337 179 0 chr13 34143163 34143258 -67729911 + L2 LINE L2 3158 3269 -3 1848 178 0 20 chr13 34143713 34144016 -67729153 + AluJo SINE Alu 1 297 -15 843 204 85 27 chr13 34144029 34144289 -67728880 + L1MC5 LINE L1 6633 6907 -1054 222 174 0 0 chr13 34144373 34144419 -67728750 + (TA)n Simple_repeat Simple_repeat 1 46 0 479 263 21 44 chr13 34144477 34144746 -67728423 + L1MC5 LINE L1 7005 7256 -733 23 33 0 0 chr13 34144878 34144908 -67728261 + AT_rich Low_complexity Low_complexity 1 30 0 195 391 0 0 chr13 34144993 34145062 -67728107 - L3 LINE CR1 -1468 109 41 2094 94 52 3 chr13 34145402 34145688 -67727481 + AluSg SINE Alu 1 300 -10 770 262 57 13 chr13 34145804 34146033 -67727136 + MIR SINE MIR 12 250 -12 316 260 71 39 chr13 34146104 34146258 -67726911 + L1ME4a LINE L1 5962 6120 -1 274 309 59 33 chr13 34146394 34146588 -67726581 + L2 LINE L2 2724 2919 -353 238 246 45 36 chr13 34146677 34146787 -67726382 + MLT1J2 LTR MaLR 338 448 -2 547 207 138 69 chr13 34146818 34147198 -67725971 + HAL1 LINE L1 2027 2444 -63 2255 120 3 0 chr13 34147198 34147507 -67725662 + AluSx SINE Alu 1 310 -2 547 207 138 69 chr13 34147507 34147575 -67725594 + HAL1 LINE L1 2444 2506 -1 297 120 0 0 chr13 34148473 34148523 -67724646 + L1MB8 LINE L1 6108 6157 -21 2198 148 8 13 chr13 34149229 34149606 -67723563 + THE1C LTR MaLR 1 375 0 190 347 159 11 chr13 34149633 34149809 -67723360 + L2 LINE L2 2578 2779 -535 2325 112 0 0 chr13 34149817 34150213 -67722956 + AluSg SINE Alu 1 396 0 424 169 60 12 chr13 34150520 34150603 -67722566 - MIR SINE MIR -10 252 166 21 112 0 0 chr13 34150659 34150757 -67722412 + AT_rich Low_complexity Low_complexity 1 98 0 9274 113 16 1 chr13 34150801 34152328 -67720841 + L1M1 LINE L1 2060 3609 -3956 953 160 0 0 chr13 34152328 34152472 -67720697 + AluJb SINE Alu 169 312 0 1681 174 0 30 chr13 34152472 34152845 -67720324 + L1M1 LINE L1 3597 3958 -3607 454 204 92 0 chr13 34152846 34152944 -67720225 + L1M1 LINE L1 5484 5590 -1975 4743 140 14 11 chr13 34152995 34154985 -67718184 + L1MA2 LINE L1 4065 6304 0 1852 92 0 0 chr13 34155030 34155269 -67717900 + AluSq SINE Alu 67 305 -8 1831 149 47 0 chr13 34155354 34155629 -67717540 + AluSx SINE Alu 2 289 -23 773 140 27 80 chr13 34155659 34155809 -67717360 + FLAM_C SINE Alu 2 143 0 2221 114 34 3 chr13 34155813 34156171 -67716998 + L1MC/D LINE L1 5317 5685 -557 1924 142 0 45 chr13 34156254 34156563 -67716606 + AluJb SINE Alu 1 295 -17 185 176 0 0 chr13 34157343 34157377 -67715792 + L2 LINE L2 3280 3313 0 1927 213 196 22 chr13 34157513 34158210 -67714959 + L1ME1 LINE L1 5188 6077 -89 2357 102 0 0 chr13 34158210 34158505 -67714664 - AluSg SINE Alu -15 295 1 1927 213 196 22 chr13 34158505 34158605 -67714564 + L1ME1 LINE L1 6077 6158 -8 33 0 0 0 chr13 34158874 34158907 -67714262 + AT_rich Low_complexity Low_complexity 1 33 0 2033 121 57 7 chr13 34159794 34160092 -67713077 - AluSq SINE Alu 0 313 1 1832 172 20 3 chr13 34160208 34160511 -67712658 - AluJb SINE Alu -4 308 1 2405 57 6 25 chr13 34161274 34161591 -67711578 - AluY SINE Alu 0 311 1 277 297 10 0 chr13 34162084 34162185 -67710984 - MARNA DNA Mariner -51 535 434 195 42 0 0 chr13 34162689 34162713 -67710456 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 23 33 0 0 chr13 34162938 34162968 -67710201 + AT_rich Low_complexity Low_complexity 1 30 0 410 241 178 29 chr13 34163795 34163969 -67709200 - MIR SINE MIR -58 204 5 2389 45 0 17 chr13 34164142 34164433 -67708736 + L1PA5 LINE L1 5869 6154 0 713 249 104 10 chr13 34165150 34165351 -67707818 + MIR SINE MIR 43 262 0 270 0 0 0 chr13 34165511 34165541 -67707628 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 734 144 68 8 chr13 34165890 34166008 -67707161 - LTR9B LTR ERV1 -432 212 88 5562 82 42 11 chr13 34166008 34166838 -67706331 + SVA Other Other 13 868 -518 1644 168 7 7 chr13 34167060 34167346 -67705823 - AluJo SINE Alu -26 286 1 2878 146 38 8 chr13 34167346 34167825 -67705344 + Tigger3(Golem) DNA MER2_type 2537 3029 0 302 246 19 103 chr13 34168320 34168352 -67704817 - MER5A DNA MER1_type -33 145 112 2607 54 0 0 chr13 34168352 34168650 -67704519 + AluY SINE Alu 1 298 -13 302 246 19 103 chr13 34168650 34168790 -67704379 - MER5A DNA MER1_type -66 112 1 208 286 104 26 chr13 34169344 34169421 -67703748 + MIR SINE MIR 8 90 -172 310 279 105 17 chr13 34169695 34169867 -67703302 - MIR SINE MIR -48 214 28 * 768 268 16 49 chr13 34169812 34170055 -67703114 + MIR SINE MIR 6 240 -22 3009 208 67 17 chr13 34170597 34170758 -67702411 + L1MB5 LINE L1 2880 3032 -3114 2264 113 3 0 chr13 34170758 34171067 -67702102 + AluSg SINE Alu 1 310 0 3009 208 67 17 chr13 34171067 34171728 -67701441 + L1MB5 LINE L1 3032 3743 -2403 1692 172 23 36 chr13 34172559 34172867 -67700302 + AluJo SINE Alu 1 304 -8 180 203 51 51 chr13 34173385 34173444 -67699725 - MER5B DNA MER1_type -4 174 116 245 292 44 31 chr13 34173536 34173646 -67699523 + MER5A DNA MER1_type 65 177 -1 192 306 82 35 chr13 34174212 34174297 -67698872 + L2 LINE L2 3137 3225 -47 1098 189 141 42 chr13 34174340 34174403 -67698766 - MER46C DNA MER2_type -2 336 281 1695 161 24 7 chr13 34174403 34174694 -67698475 - AluJb SINE Alu -12 300 5 1098 189 141 42 chr13 34174694 34174936 -67698233 - MER46C DNA MER2_type -57 281 1 290 210 12 37 chr13 34174955 34175036 -67698133 - MIR SINE MIR 0 262 184 505 128 26 0 chr13 34175312 34175390 -67697779 + AluJ/FLAM SINE Alu 1 80 -232 216 297 10 79 chr13 34175655 34175756 -67697413 - MER5A DNA MER1_type 0 189 96 27 0 0 0 chr13 34175786 34175813 -67697356 + AT_rich Low_complexity Low_complexity 1 27 0 1603 157 122 29 chr13 34176361 34176706 -67696463 + MLT1C LTR MaLR 91 467 0 538 157 39 10 chr13 34176711 34176813 -67696356 + L1MB5 LINE L1 3860 3964 -2182 1942 163 0 0 chr13 34176817 34177124 -67696045 + AluJb SINE Alu 1 307 -5 1903 151 41 60 chr13 34177133 34177748 -67695421 + L1MB5 LINE L1 4918 5528 -652 1548 181 53 20 chr13 34177749 34178048 -67695121 + AluJb SINE Alu 1 309 -3 548 80 5 120 chr13 34178057 34178257 -67694912 + (GGAAA)n Simple_repeat Simple_repeat 3 179 0 1563 150 68 4 chr13 34178260 34178540 -67694629 + L1MB5 LINE L1 5535 5832 -342 1399 119 55 0 chr13 34178540 34178741 -67694428 + AluSq SINE Alu 1 212 -101 1695 117 0 79 chr13 34178913 34179204 -67693965 - AluSg SINE Alu -42 268 1 589 196 29 36 chr13 34179451 34179589 -67693580 + L2 LINE L2 3132 3268 -4 2013 103 0 39 chr13 34180320 34180631 -67692538 + AluJo SINE Alu 1 299 -13 216 0 0 0 chr13 34180778 34180802 -67692367 + (T)n Simple_repeat Simple_repeat 1 24 0 559 233 120 0 chr13 34181167 34181317 -67691852 - MER5A DNA MER1_type -2 187 20 2003 135 0 47 chr13 34181318 34181636 -67691533 - AluSx SINE Alu -9 303 1 247 367 79 22 chr13 34181652 34181791 -67691378 + L2 LINE L2 3119 3265 -7 * 559 162 110 37 chr13 34181760 34181844 -67691325 - L2 LINE L2 0 3313 3214 198 0 0 0 chr13 34181844 34181866 -67691303 + (CA)n Simple_repeat Simple_repeat 2 23 0 559 162 110 37 chr13 34181866 34181917 -67691252 - L2 LINE L2 -99 3214 3168 1761 156 19 36 chr13 34183920 34184228 -67688941 + AluJo SINE Alu 1 303 -9 748 175 0 8 chr13 34184558 34184678 -67688491 - FLAM_C SINE Alu -12 131 13 463 257 0 0 chr13 34184690 34184795 -67688374 - L1MA10 LINE L1 -64 6270 6166 1728 176 3 16 chr13 34185315 34185628 -67687541 - AluJo SINE Alu -3 309 1 688 262 65 31 chr13 34185657 34185947 -67687222 - L1ME3A LINE L1 -232 5938 5639 2335 104 3 0 chr13 34185964 34186271 -67686898 + AluSx SINE Alu 1 308 -4 308 195 0 0 chr13 34186276 34186357 -67686812 - L1ME3A LINE L1 -741 5429 5372 1148 182 29 10 chr13 34186823 34187032 -67686137 + L1MB7 LINE L1 5895 6107 -77 351 241 45 38 chr13 34187126 34187259 -67685910 - L1ME3A LINE L1 -36 6134 6001 314 295 58 64 chr13 34187310 34187401 -67685768 - L1ME3A LINE L1 -875 5271 5180 1906 176 0 3 chr13 34187401 34187702 -67685467 - AluJb SINE Alu -12 300 1 314 295 58 64 chr13 34187702 34187783 -67685386 - L1ME3A LINE L1 -966 5180 5100 474 75 0 0 chr13 34187858 34187925 -67685244 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 2132 137 0 0 chr13 34188184 34188483 -67684686 - AluSx SINE Alu -13 299 1 2231 123 0 16 chr13 34189278 34189595 -67683574 + AluSx SINE Alu 1 312 0 246 276 61 51 chr13 34189711 34189809 -67683360 - MIR SINE MIR -64 144 46 2437 78 10 0 chr13 34189917 34190225 -67682944 + AluY SINE Alu 1 311 0 189 74 0 0 chr13 34190298 34190325 -67682844 + (CATAT)n Simple_repeat Simple_repeat 4 30 0 414 288 59 12 chr13 34190881 34191051 -67682118 + L1ME4a LINE L1 5681 5858 -263 239 220 0 0 chr13 34191098 34191157 -67682012 + L1ME4a LINE L1 6060 6118 -3 26 30 0 0 chr13 34192172 34192205 -67680964 + AT_rich Low_complexity Low_complexity 1 33 0 1261 114 116 32 chr13 34192440 34192700 -67680469 - MER1B DNA MER1_type -1 338 97 451 256 118 36 chr13 34192729 34192973 -67680196 + L1MC4 LINE L1 7688 7994 -1 829 211 58 0 chr13 34192973 34193144 -67680025 + AluJb SINE Alu 127 307 -5 1856 88 7 81 chr13 34193275 34193611 -67679558 + AluSq SINE Alu 1 313 0 2210 132 31 0 chr13 34193705 34194032 -67679137 + MER1B DNA MER1_type 1 337 0 2203 78 0 3 chr13 34194258 34194586 -67678583 + AluSx SINE Alu 1 327 0 209 273 0 55 chr13 34195317 34195372 -67677797 + L2 LINE L2 3219 3270 -2 348 332 64 25 chr13 34195872 34196074 -67677095 + L2 LINE L2 2851 3060 -212 182 346 0 19 chr13 34196154 34196206 -67676963 + L2 LINE L2 3136 3186 -86 586 179 21 132 chr13 34196332 34196522 -67676647 - MER7A DNA MER2_type -179 167 1 205 333 77 43 chr13 34197341 34197458 -67675711 + L2 LINE L2 3142 3262 -10 207 0 0 0 chr13 34197932 34197955 -67675214 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1321 176 5 0 chr13 34197979 34198200 -67674969 - AluJb SINE Alu -90 222 1 627 277 55 30 chr13 34198207 34198409 -67674760 - MIR SINE MIR -54 208 2 362 271 42 25 chr13 34198517 34198635 -67674534 - L2 LINE L2 -26 3287 3168 248 335 13 83 chr13 34198984 34199122 -67674047 + L2 LINE L2 2621 2767 -547 754 159 273 49 chr13 34199122 34199323 -67673846 + MER33 DNA MER1_type 2 157 -2428 2055 118 0 0 chr13 34199323 34199593 -67673576 + AluSc SINE Alu 1 270 -39 630 0 0 0 chr13 34199593 34199663 -67673506 + (TC)n Simple_repeat Simple_repeat 2 71 0 342 0 0 0 chr13 34199662 34199700 -67673469 + (TA)n Simple_repeat Simple_repeat 1 38 0 754 159 273 49 chr13 34199663 34199761 -67673408 + MER33 DNA MER1_type 156 324 0 248 335 13 83 chr13 34199761 34199852 -67673317 + L2 LINE L2 2767 2834 -480 22 35 0 0 chr13 34199966 34199995 -67673174 + AT_rich Low_complexity Low_complexity 1 29 0 2066 153 0 0 chr13 34200004 34200305 -67672864 + AluSx SINE Alu 1 301 -11 304 277 161 9 chr13 34200516 34200628 -67672541 + L2 LINE L2 3141 3269 -3 1980 62 4 35 chr13 34200706 34200963 -67672206 - AluY SINE Alu -17 294 46 1772 98 0 0 chr13 34202517 34202742 -67670427 + AluSg/x SINE Alu 84 308 -2 417 273 48 48 chr13 34202760 34202925 -67670244 - L2 LINE L2 -19 3294 3130 2114 66 37 0 chr13 34203873 34204145 -67669024 + AluY SINE Alu 1 282 -29 231 36 0 0 chr13 34204145 34204173 -67668996 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 321 120 0 0 chr13 34204173 34204223 -67668946 + Alu SINE Alu 250 299 -1 280 306 65 9 chr13 34205244 34205352 -67667817 + MIR SINE MIR 34 147 -61 1624 206 14 0 chr13 34205956 34206252 -67666917 + AluJo SINE Alu 5 304 -8 1105 163 0 0 chr13 34206330 34206496 -67666673 + FRAM SINE Alu 1 165 -11 555 290 125 17 chr13 34206603 34206900 -67666269 - MLT1J2 LTR MaLR 0 450 122 6882 53 2 32 chr13 34208587 34209504 -67663665 + SVA Other Other 497 1386 0 31 26 0 0 chr13 34209547 34209585 -67663584 + AT_rich Low_complexity Low_complexity 1 38 0 2273 95 7 0 chr13 34209629 34209923 -67663246 - AluY SINE Alu -15 296 1 1220 130 17 35 chr13 34210230 34210460 -67662709 + L1MB7 LINE L1 5940 6165 -19 22 0 0 0 chr13 34210656 34210678 -67662491 + AT_rich Low_complexity Low_complexity 1 22 0 2178 125 0 0 chr13 34210707 34211012 -67662157 - AluSq SINE Alu -8 305 1 260 230 40 0 chr13 34211183 34211257 -67661912 - L1ME3A LINE L1 -88 6082 6006 235 139 0 0 chr13 34211311 34211347 -67661822 - MIR SINE MIR -110 152 117 1285 300 42 9 chr13 34211350 34211894 -67661275 - L1ME3A LINE L1 -208 5962 5401 25 51 0 0 chr13 34212877 34212916 -67660253 + AT_rich Low_complexity Low_complexity 1 39 0 14401 115 43 40 chr13 34213343 34213512 -67659657 - Tigger1 DNA MER2_type -1 2417 2250 768 41 10 0 chr13 34213512 34213609 -67659560 + L1PA3 LINE L1 6056 6153 -2 14401 115 43 40 chr13 34213609 34215847 -67657322 - Tigger1 DNA MER2_type -168 2250 1 435 333 37 7 chr13 34216129 34216264 -67656905 - L2 LINE L2 0 3272 3134 199 369 12 24 chr13 34216843 34216927 -67656242 + MIR SINE MIR 69 151 -57 275 348 189 0 chr13 34217714 34217878 -67655291 - L2 LINE L2 0 3272 3078 1814 150 19 0 chr13 34218835 34219142 -67654027 + L1M2 LINE L1 5473 5785 -506 2038 130 3 0 chr13 34219142 34219434 -67653735 + AluSx SINE Alu 1 293 -19 378 318 7 7 chr13 34219499 34219650 -67653519 - L1ME LINE L1 -578 5584 5434 1187 168 5 0 chr13 34219650 34219835 -67653334 - AluJb SINE Alu -56 256 71 795 176 0 0 chr13 34219845 34219970 -67653199 - FLAM_C SINE Alu -8 125 1 813 181 27 13 chr13 34220045 34220194 -67652975 - FRAM SINE Alu -25 151 1 25 0 0 0 chr13 34220371 34220396 -67652773 + AT_rich Low_complexity Low_complexity 1 25 0 475 261 73 105 chr13 34220414 34221069 -67652100 + HAL1 LINE L1 999 1632 -875 367 264 123 75 chr13 34221526 34221731 -67651438 + L1ME4a LINE L1 2104 2329 -4067 216 0 0 0 chr13 34221731 34221755 -67651414 + (CA)n Simple_repeat Simple_repeat 1 24 0 367 264 123 75 chr13 34221755 34221841 -67651328 + L1ME4a LINE L1 2329 2409 -3987 2098 91 0 18 chr13 34222148 34222454 -67650715 + AluSg SINE Alu 9 309 0 349 337 183 5 chr13 34222772 34223143 -67650026 + L1ME4a LINE L1 4108 4544 -1671 254 247 146 19 chr13 34223249 34223407 -67649762 + HAL1b LINE L1 1164 1341 -7 303 284 234 12 chr13 34223489 34223746 -67649423 + L1ME4a LINE L1 4588 4901 -1314 22 0 0 0 chr13 34223890 34223912 -67649257 + AT_rich Low_complexity Low_complexity 1 22 0 595 245 132 34 chr13 34224195 34224460 -67648709 + L1ME4a LINE L1 5583 5873 -317 457 307 13 0 chr13 34224500 34224650 -67648519 + MER104 DNA Tc2 28 179 -1 322 225 23 54 chr13 34224797 34224926 -67648243 + L1ME4a LINE L1 6061 6185 -5 2358 89 7 0 chr13 34225012 34225315 -67647854 - AluSg SINE Alu -5 305 1 294 150 0 0 chr13 34225766 34225806 -67647363 + Alu SINE Alu 1 40 -263 653 94 0 31 chr13 34225806 34225902 -67647267 + AluJb SINE Alu 208 300 -12 2257 100 3 0 chr13 34226210 34226509 -67646660 + AluSx SINE Alu 1 300 -12 354 265 6 0 chr13 34226630 34226735 -67646434 + L1ME2 LINE L1 6054 6166 0 188 268 0 0 chr13 34228260 34228301 -67644868 - L2 LINE L2 -4 3309 3269 260 262 16 0 chr13 34228942 34229003 -67644166 - L2 LINE L2 -6 3307 3246 339 44 0 0 chr13 34230217 34230262 -67642907 + (CA)n Simple_repeat Simple_repeat 2 46 0 2020 230 27 6 chr13 34232957 34233470 -67639699 + L1MEc LINE L1 859 1382 -5339 475 143 13 0 chr13 34233473 34233550 -67639619 + LTR54 LTR ERV1 404 481 -29 244 313 6 32 chr13 34233562 34233746 -67639423 + L1MEc LINE L1 1322 1500 -5040 8595 122 24 39 chr13 34233788 34235268 -67637901 + L1M1 LINE L1 1587 3044 -4521 354 147 9 4 chr13 34235276 34235496 -67637673 + AluJo SINE Alu 1 300 0 434 136 12 0 chr13 34235498 34235579 -67637590 + GA-rich Low_complexity Low_complexity 3 84 0 2961 117 30 36 chr13 34235579 34235953 -67637216 + L1MA3 LINE L1 5780 6152 -153 2302 84 0 42 chr13 34235953 34236263 -67636906 - AluY SINE Alu -14 297 1 2961 117 30 36 chr13 34236263 34236416 -67636753 + L1MA3 LINE L1 6152 6304 -1 301 368 57 24 chr13 34236472 34236681 -67636488 - L1MC4a LINE L1 -1223 6585 6370 36 87 0 0 chr13 34237411 34237503 -67635666 + AT_rich Low_complexity Low_complexity 1 92 0 884 111 0 15 chr13 34237527 34237662 -67635507 + FLAM_C SINE Alu 1 133 0 190 357 142 37 chr13 34237959 34238335 -67634834 - L2 LINE L2 -790 2524 2084 1592 165 36 25 chr13 34238335 34238614 -67634555 + AluJb SINE Alu 1 282 -30 190 357 142 37 chr13 34238614 34238722 -67634447 - L2 LINE L2 -1230 2084 1989 778 127 22 30 chr13 34239576 34239710 -67633459 + FLAM_C SINE Alu 1 133 0 1978 154 7 3 chr13 34240910 34241216 -67631953 + AluSx SINE Alu 1 307 -5 2434 150 65 14 chr13 34241463 34241896 -67631273 + LTR32 LTR ERVL 15 469 -2 318 52 0 103 chr13 34242139 34242197 -67630972 - MADE1 DNA Mariner -28 52 1 2032 156 0 29 chr13 34242423 34242770 -67630399 - MER1B DNA MER1_type 0 337 1 261 0 0 0 chr13 34242889 34242918 -67630251 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 454 230 119 72 chr13 34244234 34244621 -67628548 + L1ME4a LINE L1 5694 6098 -23 2009 135 0 22 chr13 34244696 34245014 -67628155 + AluJb SINE Alu 2 312 0 2230 107 0 20 chr13 34245018 34245318 -67627851 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr13 34245318 34245342 -67627827 + AT_rich Low_complexity Low_complexity 1 24 0 652 217 8 0 chr13 34245497 34245617 -67627552 + L2 LINE L2 3189 3309 -4 24 0 0 0 chr13 34245624 34245648 -67627521 + AT_rich Low_complexity Low_complexity 1 24 0 719 281 41 8 chr13 34246073 34246315 -67626854 + MER112 DNA MER1_type 6 255 -5 1064 224 54 12 chr13 34246370 34246611 -67626558 + MIR SINE MIR 12 262 0 467 234 43 14 chr13 34246970 34247111 -67626058 - L1MB7 LINE L1 0 6184 6040 3413 172 49 14 chr13 34247649 34248342 -67624827 + L1MB8 LINE L1 5452 6168 -10 1912 136 30 7 chr13 34248349 34248644 -67624525 - AluSx SINE Alu -10 302 1 2173 96 3 0 chr13 34248759 34249041 -67624128 - AluSx SINE Alu -19 293 11 1247 182 0 22 chr13 34249163 34249388 -67623781 + AluJb SINE Alu 85 304 -8 392 242 36 129 chr13 34250196 34250390 -67622779 + MLT1J LTR MaLR 1 176 -335 261 196 71 0 chr13 34250398 34250454 -67622715 + L1MDa LINE L1 40 99 -6441 3290 202 63 96 chr13 34250781 34251876 -67621293 + L1MDa LINE L1 89 1147 -5393 2019 141 3 3 chr13 34252074 34252372 -67620797 + AluSx SINE Alu 1 298 -14 670 175 18 0 chr13 34252401 34252515 -67620654 - FLAM_A SINE Alu -11 131 16 812 236 39 0 chr13 34252912 34253094 -67620075 - MER5A DNA MER1_type 0 189 1 764 125 15 29 chr13 34253219 34253355 -67619814 + AluJb SINE Alu 1 134 -178 194 217 87 0 chr13 34253494 34253540 -67619629 - L2 LINE L2 0 3313 3264 3465 154 119 14 chr13 34253780 34254501 -67618668 + L1MC3 LINE L1 6987 7783 -2 404 138 0 0 chr13 34255361 34255419 -67617750 + MER58 DNA MER1_type 2363 2420 0 453 297 46 15 chr13 34255741 34255936 -67617233 - MLT1A1-int LTR MaLR -478 893 693 270 130 0 0 chr13 34256167 34256213 -67616956 + LTR49 LTR ERV1 2 47 -548 * 704 180 86 54 chr13 34256200 34256213 -67616956 + MER34B LTR ERV1 337 348 -217 2376 65 3 0 chr13 34256213 34256504 -67616665 - AluY SINE Alu -19 292 1 704 180 86 54 chr13 34256504 34256712 -67616457 + MER34B LTR ERV1 348 565 0 503 313 67 17 chr13 34256739 34257036 -67616133 - MLT1A1-int LTR MaLR -765 606 295 1725 165 4 0 chr13 34257211 34257477 -67615692 + AluJb SINE Alu 25 291 -21 2024 177 11 3 chr13 34257491 34257842 -67615327 - MLT1A1 LTR MaLR 0 365 12 1278 222 214 39 chr13 34257876 34258335 -67614834 - MLT1F LTR MaLR -3 539 1 193 247 0 136 chr13 34258846 34258927 -67614242 - MIR SINE MIR -73 189 120 1269 219 12 0 chr13 34258929 34259171 -67613998 - AluJo SINE Alu -66 246 2 344 334 58 30 chr13 34259202 34259597 -67613572 - L1ME LINE L1 -338 5783 5378 790 239 163 35 chr13 34260789 34261157 -67612012 - L1ME1 LINE L1 -4 6162 5748 * 1082 194 51 77 chr13 34261155 34261204 -67611965 + L1ME2 LINE L1 5559 5608 -556 2226 126 0 0 chr13 34261204 34261514 -67611655 + AluSx SINE Alu 1 310 -2 1082 194 51 77 chr13 34261514 34261814 -67611355 + L1ME2 LINE L1 5608 5899 -265 1569 165 73 0 chr13 34261955 34262215 -67610954 - AluJb SINE Alu -33 279 1 629 321 37 47 chr13 34262216 34262618 -67610551 - L1MEd LINE L1 -5286 833 436 548 308 19 10 chr13 34262742 34262950 -67610219 - L1MEd LINE L1 -5899 220 11 492 310 54 10 chr13 34262959 34263162 -67610007 - L3 LINE CR1 -715 862 651 353 350 122 14 chr13 34264021 34264235 -67608934 + MIR SINE MIR 20 256 -6 712 184 28 14 chr13 34264357 34264498 -67608671 + FLAM_C SINE Alu 1 143 0 384 305 103 62 chr13 34264568 34264840 -67608329 - L1MC4a LINE L1 -1470 6338 6056 242 272 11 22 chr13 34264854 34264946 -67608223 - L1MC4a LINE L1 -1907 5901 5811 498 233 0 17 chr13 34264990 34265110 -67608059 - L1MC4a LINE L1 -2001 5807 5690 652 219 159 56 chr13 34265120 34265288 -67607881 - L1MC4a LINE L1 -2232 5576 5368 2079 134 0 0 chr13 34265288 34265578 -67607591 - AluSx SINE Alu -20 292 3 652 219 159 56 chr13 34265578 34265679 -67607490 - L1MC4a LINE L1 -2440 5368 5279 549 290 114 18 chr13 34265842 34266114 -67607055 - HAL1b LINE L1 -835 513 216 662 145 145 8 chr13 34266342 34266459 -67606710 - FLAM_A SINE Alu 0 133 1 876 134 0 0 chr13 34266723 34266850 -67606319 - FLAM_C SINE Alu -16 127 1 302 186 75 36 chr13 34267482 34267585 -67605584 + LTR48 LTR ERV1 486 751 -13 1794 142 0 53 chr13 34267614 34267916 -67605253 - AluJb SINE Alu -26 286 1 574 301 122 44 chr13 34268032 34268583 -67604586 - HAL1b LINE L1 -498 850 257 398 170 140 0 chr13 34268673 34268773 -67604396 - L1MB4 LINE L1 -2 6178 6065 4049 176 117 20 chr13 34269068 34270495 -67602674 - L1PA16 LINE L1 -1 6165 4352 402 21 0 0 chr13 34270495 34270542 -67602627 + (TG)n Simple_repeat Simple_repeat 1 47 0 4049 176 117 20 chr13 34270542 34270798 -67602371 - L1PA16 LINE L1 -1814 4352 4122 207 0 0 0 chr13 34271001 34271024 -67602145 + (TA)n Simple_repeat Simple_repeat 1 23 0 1673 197 28 0 chr13 34271072 34271361 -67601808 + AluJb SINE Alu 1 297 -15 336 217 130 36 chr13 34271371 34271509 -67601660 - L1MB4 LINE L1 -2240 5802 5652 488 235 45 8 chr13 34271527 34271659 -67601510 + L1ME LINE L1 5406 5542 -622 * 817 227 89 38 chr13 34271646 34271937 -67601232 - L1MB4 LINE L1 -511 5655 5350 457 228 131 67 chr13 34271928 34272196 -67600973 - L1ME4a LINE L1 -234 5887 5603 * 2311 94 16 0 chr13 34272289 34272597 -67600572 + AluSq SINE Alu 1 313 0 279 54 0 0 chr13 34273519 34273556 -67599613 + (CCA)n Simple_repeat Simple_repeat 1 37 0 344 284 219 22 chr13 34274877 34275060 -67598109 + MIR SINE MIR 21 239 -23 349 202 87 10 chr13 34275255 34275359 -67597810 + L1ME4a LINE L1 5992 6103 -18 2273 65 0 26 chr13 34275426 34275732 -67597437 + AluSx SINE Alu 1 298 -14 596 103 164 35 chr13 34275737 34275853 -67597316 + FLAM_C SINE Alu 1 131 -2 401 120 0 40 chr13 34275866 34275941 -67597228 + L1ME LINE L1 5533 5604 -517 23 33 0 0 chr13 34275958 34275988 -67597181 + AT_rich Low_complexity Low_complexity 1 30 0 663 276 93 16 chr13 34276538 34276975 -67596194 - L1ME LINE L1 -336 5768 5305 528 281 107 60 chr13 34277126 34277731 -67595438 - L1ME LINE L1 -1956 4173 3518 258 302 147 23 chr13 34278121 34278720 -67594449 - L1ME LINE L1 -3044 3085 2413 316 219 100 62 chr13 34278811 34278971 -67594198 - L1ME LINE L1 -3850 2279 2114 1961 125 0 0 chr13 34279042 34279306 -67593863 - AluSx SINE Alu -24 288 25 349 267 104 45 chr13 34279691 34280028 -67593141 - HAL1b LINE L1 -770 1653 457 235 261 120 28 chr13 34280074 34280216 -67592953 - L1ME LINE L1 -5070 1049 895 180 182 0 136 chr13 34280265 34280331 -67592838 - L3 LINE CR1 -294 1283 1227 271 238 100 81 chr13 34280557 34280717 -67592452 + L1ME LINE L1 5599 5761 -360 53 0 0 0 chr13 34280717 34280770 -67592399 + AT_rich Low_complexity Low_complexity 1 53 0 253 169 99 14 chr13 34280977 34281048 -67592121 - MIR SINE MIR -50 212 136 312 27 0 0 chr13 34281249 34281286 -67591883 + (TA)n Simple_repeat Simple_repeat 2 38 0 2051 97 12 66 chr13 34281890 34282210 -67590959 - AluSg SINE Alu -7 303 1 8342 164 23 47 chr13 34282210 34283074 -67590095 - L1MC3 LINE L1 -25 7760 6877 2199 125 0 3 chr13 34283074 34283377 -67589792 - AluSx SINE Alu -10 302 1 8342 164 23 47 chr13 34283377 34283922 -67589247 - L1MC3 LINE L1 -908 6877 6399 1369 185 70 21 chr13 34283922 34284208 -67588961 + AluSg SINE Alu 3 302 -8 8342 164 23 47 chr13 34284208 34284565 -67588604 - L1MC3 LINE L1 -1386 6399 6035 4168 191 73 22 chr13 34284634 34285640 -67587529 - Charlie1a DNA MER1_type 0 1455 399 933 205 44 57 chr13 34285705 34285934 -67587235 - Charlie1a DNA MER1_type -1219 236 11 1835 119 8 8 chr13 34287215 34287476 -67585693 - AluSx SINE Alu -12 300 40 1445 142 41 0 chr13 34287933 34288152 -67585017 - AluJo SINE Alu -82 230 3 297 289 0 48 chr13 34288177 34288260 -67584909 - MIR SINE MIR -172 90 12 228 291 197 33 chr13 34288265 34288621 -67584548 + L2 LINE L2 2005 2473 -841 185 343 152 39 chr13 34288622 34288800 -67584369 + L2 LINE L2 2678 2875 -439 21 0 0 0 chr13 34289193 34289214 -67583955 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 34289651 34289682 -67583487 + AT_rich Low_complexity Low_complexity 1 31 0 600 266 48 16 chr13 34290644 34290832 -67582337 + MIR SINE MIR 36 229 -33 2969 209 47 65 chr13 34291413 34292218 -67580951 - MER21B LTR ERV1 -54 809 19 274 238 60 24 chr13 34292243 34292327 -67580842 - MER21B LTR ERV1 -776 87 1 1989 116 7 23 chr13 34292785 34293088 -67580081 - AluSx SINE Alu -12 300 3 894 180 72 68 chr13 34293114 34293392 -67579777 - LTR4 LTR ERV1 0 596 318 512 249 19 80 chr13 34293584 34293797 -67579372 - LTR4 LTR ERV1 -396 200 1 534 241 87 34 chr13 34293923 34294130 -67579039 - LTR48B LTR ERV1 -304 340 123 1675 179 0 39 chr13 34294559 34294866 -67578303 + AluJo SINE Alu 1 295 -17 596 278 51 63 chr13 34295282 34295319 -67577850 - LTR24B LTR ERV1 -6 570 534 2290 106 0 0 chr13 34295319 34295612 -67577557 - AluSq SINE Alu -16 297 5 596 278 51 63 chr13 34295612 34295908 -67577261 - LTR24B LTR ERV1 -42 534 241 1486 196 10 27 chr13 34295933 34296234 -67576935 + AluJo SINE Alu 3 298 -14 406 181 9 57 chr13 34296293 34296398 -67576771 - LTR24B LTR ERV1 -365 100 1 1336 223 7 40 chr13 34296433 34296734 -67576435 - AluJo SINE Alu -21 291 1 23 33 0 0 chr13 34296862 34296892 -67576277 + AT_rich Low_complexity Low_complexity 1 30 0 1966 138 10 14 chr13 34296895 34297191 -67575978 + AluSx SINE Alu 1 295 -17 1019 325 121 36 chr13 34298746 34299416 -67573753 - L3 LINE CR1 -673 904 178 23 33 0 0 chr13 34299459 34299489 -67573680 + AT_rich Low_complexity Low_complexity 1 30 0 1893 157 14 3 chr13 34300345 34300631 -67572538 + AluJb SINE Alu 1 289 -23 1676 161 9 40 chr13 34300735 34301057 -67572112 - AluJo SINE Alu 0 312 1 220 191 43 0 chr13 34301438 34301485 -67571684 + (CATA)n Simple_repeat Simple_repeat 4 52 0 180 0 0 0 chr13 34301694 34301714 -67571455 + (TA)n Simple_repeat Simple_repeat 2 21 0 866 125 0 22 chr13 34301715 34301851 -67571318 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr13 34301851 34301881 -67571288 + AT_rich Low_complexity Low_complexity 1 30 0 202 190 17 35 chr13 34302546 34302604 -67570565 + CT-rich Low_complexity Low_complexity 2 58 0 1948 160 0 3 chr13 34303048 34303354 -67569815 + AluJb SINE Alu 1 305 -7 2031 142 0 14 chr13 34303760 34304056 -67569113 + AluSx SINE Alu 1 292 -20 543 300 89 0 chr13 34304083 34304263 -67568906 + L1ME4a LINE L1 5447 5642 -2166 1138 186 5 9 chr13 34304555 34304765 -67568404 - MER3 DNA MER1_type 0 209 1 2341 94 51 14 chr13 34304775 34305126 -67568043 - THE1B LTR MaLR 0 364 1 1848 186 0 3 chr13 34305272 34305568 -67567601 - AluJb SINE Alu -17 295 1 23 0 0 0 chr13 34305571 34305594 -67567575 + AT_rich Low_complexity Low_complexity 1 23 0 868 185 20 0 chr13 34305934 34306085 -67567084 + FAM SINE Alu 12 165 -20 1658 163 16 16 chr13 34306934 34307240 -67565929 + AluJb SINE Alu 1 306 -6 530 230 122 12 chr13 34307411 34307584 -67565585 - MIR SINE MIR -33 229 39 1952 139 3 3 chr13 34308425 34308719 -67564450 + AluJb SINE Alu 1 294 -18 317 266 53 35 chr13 34308767 34308880 -67564289 + L1ME4a LINE L1 5815 5929 -235 303 200 130 20 chr13 34309051 34309151 -67564018 + L1ME4a LINE L1 5976 6086 -35 187 286 302 0 chr13 34309302 34309428 -67563741 - MIR3 SINE MIR -7 201 38 767 226 6 28 chr13 34310440 34310621 -67562548 - MIR SINE MIR -55 207 31 1859 155 30 0 chr13 34313398 34313701 -67559468 - AluJo SINE Alu 0 312 1 2148 107 3 3 chr13 34314041 34314351 -67558818 - AluSq SINE Alu 0 313 1 366 277 218 16 chr13 34314659 34314847 -67558322 + MIR SINE MIR 34 259 -3 1458 196 57 45 chr13 34315642 34315820 -67557349 + MER58B DNA MER1_type 2 187 -2233 1526 189 60 0 chr13 34315820 34316101 -67557068 + AluJo SINE Alu 1 298 -14 1458 196 57 45 chr13 34316101 34316258 -67556911 + MER58B DNA MER1_type 187 341 0 1732 155 7 42 chr13 34317115 34317424 -67555745 - AluJo SINE Alu -14 298 1 217 310 195 17 chr13 34317818 34317992 -67555177 + MIR SINE MIR 10 214 -48 714 259 96 0 chr13 34318492 34318689 -67554480 + MIR SINE MIR 26 241 -21 902 132 90 0 chr13 34318888 34319032 -67554137 - AluSg/x SINE Alu -1 311 155 2248 108 10 0 chr13 34319372 34319677 -67553492 - AluSx SINE Alu -4 308 1 1077 266 57 55 chr13 34319697 34319775 -67553394 - L1MC4a LINE L1 -1872 5936 5860 2300 100 0 16 chr13 34319775 34320085 -67553084 + AluSx SINE Alu 1 305 -7 1077 266 57 55 chr13 34320085 34320424 -67552745 - L1MC4a LINE L1 -1948 5860 5518 1119 178 70 19 chr13 34320753 34320966 -67552203 + AluJb SINE Alu 1 224 -88 24 67 0 0 chr13 34320975 34321020 -67552149 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr13 34321898 34321930 -67551239 + AT_rich Low_complexity Low_complexity 1 32 0 1814 174 7 3 chr13 34322461 34322748 -67550421 + AluJb SINE Alu 3 290 -22 2440 199 151 100 chr13 34323169 34324425 -67548744 - HAL1 LINE L1 -559 1948 630 2561 50 0 0 chr13 34324851 34325152 -67548017 - AluSg SINE Alu -5 305 5 2185 79 4 0 chr13 34325251 34325579 -67547590 - AluSg SINE Alu 0 330 2 207 0 0 0 chr13 34325891 34325914 -67547255 + (CGGG)n Simple_repeat Simple_repeat 2 24 0 280 291 196 59 chr13 34326435 34326613 -67546556 - L2 LINE L2 -38 3234 3082 1622 58 19 0 chr13 34326613 34326818 -67546351 - AluSp SINE Alu -9 304 96 280 291 196 59 chr13 34326818 34326910 -67546259 - L2 LINE L2 -190 3082 2927 1084 304 125 29 chr13 34327021 34327979 -67545190 + L2 LINE L2 2247 3297 -16 220 128 0 0 chr13 34327984 34328023 -67545146 + L2 LINE L2 3275 3313 0 2435 93 3 0 chr13 34330783 34331095 -67542074 - AluSp SINE Alu 0 313 1 2419 84 10 0 chr13 34331463 34331773 -67541396 - AluSq SINE Alu 0 313 1 29 37 0 19 chr13 34331773 34331800 -67541369 + AT_rich Low_complexity Low_complexity 1 27 -26 1877 162 0 7 chr13 34331800 34332096 -67541073 + AluJb SINE Alu 1 294 -18 29 37 0 19 chr13 34332096 34332122 -67541047 + AT_rich Low_complexity Low_complexity 27 53 0 2008 116 13 13 chr13 34332502 34332805 -67540364 - AluSq SINE Alu -10 303 1 974 200 76 89 chr13 34333271 34333504 -67539665 + MER33 DNA MER1_type 1 226 -2359 1914 146 36 7 chr13 34333504 34333806 -67539363 - AluSx SINE Alu -1 311 1 974 200 76 89 chr13 34333806 34333900 -67539269 + MER33 DNA MER1_type 226 320 -4 1741 149 10 30 chr13 34333950 34334246 -67538923 + AluJb SINE Alu 1 290 -22 5070 32 17 3 chr13 34334270 34334861 -67538308 + SVA Other Other 635 1233 -153 277 43 43 0 chr13 34334878 34334925 -67538244 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 228 234 62 0 chr13 34335789 34335853 -67537316 - MIR SINE MIR 0 262 195 1197 182 91 23 chr13 34335897 34336161 -67537008 + AluJo SINE Alu 1 282 -30 2554 65 0 7 chr13 34336677 34336985 -67536184 - AluY SINE Alu -3 308 3 534 289 86 31 chr13 34337090 34337381 -67535788 - L1ME3A LINE L1 -307 5863 5557 1358 108 10 0 chr13 34337381 34337575 -67535594 - Tigger5 DNA MER2_type -77 2246 2051 813 161 8 0 chr13 34337574 34337704 -67535465 - MER2 DNA MER2_type -214 131 1 * 355 233 0 0 chr13 34337747 34337837 -67535332 - L1ME3A LINE L1 -1495 4651 4562 41 0 0 0 chr13 34337853 34337894 -67535275 + AT_rich Low_complexity Low_complexity 1 41 0 220 258 54 12 chr13 34337927 34338094 -67535075 + (TATG)n Simple_repeat Simple_repeat 2 175 0 * 374 218 41 24 chr13 34338010 34338180 -67534989 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 264 172 0 17 chr13 34338193 34338251 -67534918 - L1ME3A LINE L1 -1610 4536 4480 198 0 0 0 chr13 34338319 34338341 -67534828 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 586 318 72 18 chr13 34338357 34338801 -67534368 - L1ME3A LINE L1 -1785 4361 3894 398 204 65 126 chr13 34338912 34338997 -67534172 - L1MC4 LINE L1 -128 7914 7825 2213 105 3 10 chr13 34338997 34339293 -67533876 - AluSc SINE Alu -15 294 1 398 204 65 126 chr13 34339293 34339320 -67533849 - L1MC4 LINE L1 -217 7825 7798 2452 119 28 19 chr13 34339320 34339681 -67533488 + THE1B LTR MaLR 1 364 0 398 204 65 126 chr13 34339681 34339797 -67533372 - L1MC4 LINE L1 -244 7798 7699 1928 151 3 7 chr13 34339815 34340107 -67533062 - AluJb SINE Alu -21 291 1 1647 149 76 21 chr13 34340265 34340553 -67532616 - AluJo SINE Alu -8 304 1 453 285 20 0 chr13 34340603 34340622 -67532547 - L1MA10 LINE L1 -1 6333 6315 1502 239 74 9 chr13 34340622 34341069 -67532100 - L1ME2 LINE L1 -14 6150 5675 2325 87 0 3 chr13 34341110 34341410 -67531759 - AluSq SINE Alu -14 299 1 305 316 62 11 chr13 34341492 34341669 -67531500 - L1ME2 LINE L1 -1771 4375 4190 1605 192 107 0 chr13 34341704 34342248 -67530921 - L1ME LINE L1 -510 5656 5046 2517 73 0 0 chr13 34343111 34343413 -67529756 - AluSq SINE Alu -11 302 1 482 296 129 21 chr13 34343467 34343700 -67529469 - MLT1L LTR MaLR -6 609 352 1838 164 0 23 chr13 34344255 34344560 -67528609 + AluJb SINE Alu 3 300 -12 656 298 113 55 chr13 34345150 34345238 -67527931 + L2 LINE L2 2285 2366 -947 441 0 0 0 chr13 34345238 34345287 -67527882 + (CA)n Simple_repeat Simple_repeat 2 50 0 656 298 113 55 chr13 34345287 34346158 -67527011 + L2 LINE L2 2366 3297 -16 275 269 34 89 chr13 34346279 34346381 -67526788 - L1M4 LINE L1 -914 5232 5126 1782 157 28 3 chr13 34346381 34346667 -67526502 - AluJo SINE Alu -19 293 1 275 269 34 89 chr13 34346667 34346891 -67526278 - L1M4 LINE L1 -1020 5126 4924 24 0 0 0 chr13 34348107 34348131 -67525038 + AT_rich Low_complexity Low_complexity 1 24 0 999 223 70 4 chr13 34348317 34348546 -67524623 - MIR SINE MIR -13 249 6 2790 10 0 0 chr13 34348617 34348915 -67524254 - AluY SINE Alu -11 300 3 237 237 61 53 chr13 34349443 34349557 -67523612 + L1MC5 LINE L1 7793 7907 -54 2295 89 0 7 chr13 34349825 34350129 -67523040 - AluSc SINE Alu -7 302 1 2271 116 0 0 chr13 34352542 34352845 -67520324 - AluSg SINE Alu -7 303 1 922 86 8 16 chr13 34353457 34353585 -67519584 + L1PB2 LINE L1 6023 6149 -2 2342 96 0 3 chr13 34354257 34354558 -67518611 - AluSq SINE Alu -13 300 1 2135 139 0 0 chr13 34355029 34355330 -67517839 - AluSx SINE Alu -11 301 1 536 205 31 75 chr13 34355564 34355669 -67517500 - MER5A DNA MER1_type -6 183 86 2467 93 0 0 chr13 34355669 34355980 -67517189 + AluSx SINE Alu 1 311 -1 536 205 31 75 chr13 34355980 34356035 -67517134 - MER5A DNA MER1_type -103 86 30 343 255 152 37 chr13 34356334 34356577 -67516592 + L1ME4a LINE L1 5848 6118 -3 224 296 37 12 chr13 34358604 34358685 -67514484 + L2 LINE L2 3190 3272 0 184 226 151 21 chr13 34359225 34359318 -67513851 + MER5A DNA MER1_type 1 105 -84 2487 79 0 0 chr13 34359390 34359695 -67513474 - AluSc SINE Alu -4 305 1 1988 140 64 14 chr13 34360275 34360632 -67512537 - THE1C LTR MaLR 0 375 1 1913 141 54 30 chr13 34360955 34361079 -67512090 - L1MB3 LINE L1 0 6183 6064 2211 120 3 84 chr13 34361079 34361446 -67511723 - MER1B DNA MER1_type 0 337 1 1913 141 54 30 chr13 34361446 34361689 -67511480 - L1MB3 LINE L1 -119 6064 5807 183 158 0 0 chr13 34362075 34362113 -67511056 + L2 LINE L2 3275 3312 -1 192 152 0 0 chr13 34364282 34364315 -67508854 + (CA)n Simple_repeat Simple_repeat 2 34 0 2204 81 14 17 chr13 34364534 34364831 -67508338 + AluSx SINE Alu 1 296 -16 2429 80 0 3 chr13 34365525 34365824 -67507345 + AluSg SINE Alu 1 298 -12 806 175 8 8 chr13 34367948 34368074 -67505095 - FLAM_A SINE Alu -7 126 1 1766 156 13 30 chr13 34368211 34368513 -67504656 + AluJb SINE Alu 1 297 -15 195 184 0 0 chr13 34368529 34368567 -67504602 + (TA)n Simple_repeat Simple_repeat 2 39 0 2037 98 73 11 chr13 34368660 34368947 -67504222 - AluSx SINE Alu -7 305 1 259 224 30 15 chr13 34369002 34369069 -67504100 - L2 LINE L2 0 3272 3205 193 286 0 0 chr13 34369206 34369255 -67503914 + L3 LINE CR1 1350 1398 -179 382 221 202 10 chr13 34369951 34370055 -67503114 - L2 LINE L2 -1 3271 3148 998 58 8 0 chr13 34371107 34371228 -67501941 + L1PA10 LINE L1 6047 6168 0 2347 81 10 0 chr13 34371716 34372011 -67501158 + AluSp SINE Alu 1 298 -15 22 35 0 0 chr13 34372699 34372728 -67500441 + AT_rich Low_complexity Low_complexity 1 29 0 2001 132 0 23 chr13 34372762 34373065 -67500104 + AluSx SINE Alu 6 301 -11 1671 169 53 3 chr13 34373485 34373769 -67499400 - AluJo SINE Alu -14 298 1 2255 93 3 3 chr13 34373970 34374292 -67498877 + AluSp SINE Alu 1 313 0 4013 108 9 9 chr13 34376167 34376694 -67496475 - MER1A DNA MER1_type 0 527 1 1961 128 35 0 chr13 34377579 34377861 -67495308 - AluJb SINE Alu -20 292 1 2365 85 10 7 chr13 34377892 34378197 -67494972 + AluSg SINE Alu 1 306 -4 2279 184 24 52 chr13 34378272 34378683 -67494486 + L1MB5 LINE L1 5678 6074 -100 1938 96 4 0 chr13 34378683 34378932 -67494237 + AluSx SINE Alu 51 300 -12 2279 184 24 52 chr13 34378932 34379024 -67494145 + L1MB5 LINE L1 6074 6167 -7 1760 158 41 3 chr13 34379769 34380061 -67493108 - AluJb SINE Alu -9 303 1 2128 108 14 11 chr13 34380600 34380887 -67492282 + AluSx SINE Alu 1 288 -24 240 200 78 0 chr13 34380887 34380977 -67492192 + GA-rich Low_complexity Low_complexity 1 97 0 2505 67 0 0 chr13 34381401 34381700 -67491469 + AluY SINE Alu 1 299 -12 1990 114 0 0 chr13 34382684 34382946 -67490223 + AluSc SINE Alu 1 262 -47 219 304 53 76 chr13 34383050 34383221 -67489948 - L2 LINE L2 -595 2719 2553 658 292 46 38 chr13 34383543 34383783 -67489386 + L1MB3 LINE L1 5515 5756 -2052 21 36 0 0 chr13 34384121 34384149 -67489020 + AT_rich Low_complexity Low_complexity 1 28 0 2304 120 3 40 chr13 34384283 34384633 -67488536 + MER1B DNA MER1_type 1 337 0 760 235 64 80 chr13 34385545 34385796 -67487373 - MIR SINE MIR -13 249 3 2317 82 20 0 chr13 34385979 34386272 -67486897 - AluY SINE Alu -12 299 1 973 124 0 8 chr13 34387420 34387549 -67485620 + FLAM_C SINE Alu 1 128 -5 2522 167 14 29 chr13 34387714 34387792 -67485377 + L1MB3 LINE L1 5706 5784 -399 4772 167 39 24 chr13 34387792 34388137 -67485032 + MER6 DNA MER2_type 1 339 -526 186 43 0 0 chr13 34388137 34388160 -67485009 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 4772 167 39 24 chr13 34388160 34388203 -67484966 + MER6 DNA MER2_type 339 380 -485 2370 71 3 7 chr13 34388203 34388500 -67484669 + AluSq SINE Alu 11 306 -7 4772 167 39 24 chr13 34388500 34388961 -67484208 + MER6 DNA MER2_type 380 864 -1 2522 167 14 29 chr13 34388961 34389157 -67484012 + L1MB3 LINE L1 5784 5981 -202 2582 60 0 0 chr13 34389157 34389459 -67483710 + AluY SINE Alu 1 302 -9 2522 167 14 29 chr13 34389459 34389668 -67483501 + L1MB3 LINE L1 5981 6183 0 818 227 52 0 chr13 34390411 34390583 -67482586 - MLT1G LTR MaLR -49 541 361 483 197 90 90 chr13 34390610 34390798 -67482371 - MER21B LTR ERV1 -361 570 290 411 321 64 28 chr13 34391343 34391592 -67481577 + L1M4 LINE L1 4491 4748 -1398 1847 116 18 39 chr13 34391612 34391897 -67481272 + AluSx SINE Alu 21 299 -13 478 276 26 0 chr13 34391936 34392092 -67481077 + HAL1 LINE L1 990 1149 -1358 808 126 34 145 chr13 34392109 34392316 -67480853 + AluJb SINE Alu 120 303 -9 245 244 199 77 chr13 34392323 34392386 -67480783 + HAL1 LINE L1 1202 1256 -1251 1781 133 0 67 chr13 34392386 34392702 -67480467 - AluJo SINE Alu -17 295 1 245 244 199 77 chr13 34392702 34392884 -67480285 + HAL1 LINE L1 1256 1477 -1030 801 130 0 21 chr13 34392896 34393158 -67480011 + AluJb SINE Alu 2 307 -5 2003 149 20 0 chr13 34393158 34393459 -67479710 + AluSx SINE Alu 1 307 -5 276 370 31 8 chr13 34393583 34393710 -67479459 + L3b LINE CR1 1102 1231 -352 2343 88 7 3 chr13 34394082 34394387 -67478782 + AluSg SINE Alu 1 306 -4 2641 48 0 0 chr13 34394388 34394698 -67478471 + AluY SINE Alu 2 311 0 6092 61 55 7 chr13 34394769 34396084 -67477085 + SVA Other Other 1 1415 0 671 310 43 53 chr13 34397944 34398341 -67474828 - L1MC4a LINE L1 -1926 5882 5490 2251 95 0 14 chr13 34398422 34398717 -67474452 + AluSc SINE Alu 1 291 -18 456 221 387 6 chr13 34398739 34398920 -67474249 - MIR SINE MIR 0 262 13 1864 142 0 56 chr13 34399069 34399207 -67473962 + AluJb SINE Alu 1 145 -167 2061 132 0 22 chr13 34399207 34399526 -67473643 + AluSx SINE Alu 1 312 0 1864 142 0 56 chr13 34399526 34399711 -67473458 + AluJb SINE Alu 145 306 -6 425 241 88 29 chr13 34400535 34400672 -67472497 - MIR SINE MIR -38 224 80 2236 102 3 0 chr13 34400842 34401137 -67472032 + AluSp SINE Alu 1 296 -17 2056 151 0 0 chr13 34401823 34402121 -67471048 + AluJb SINE Alu 2 299 -13 1740 153 25 11 chr13 34402297 34402579 -67470590 + AluSx SINE Alu 1 286 -26 2449 76 0 3 chr13 34403226 34403527 -67469642 - AluSq SINE Alu -13 300 1 2177 132 0 0 chr13 34403557 34403861 -67469308 - AluSx SINE Alu -8 304 1 2137 114 0 0 chr13 34403916 34404196 -67468973 - AluSx SINE Alu -32 280 1 22 0 0 0 chr13 34404381 34404403 -67468766 + AT_rich Low_complexity Low_complexity 1 22 0 2893 143 54 14 chr13 34404408 34404911 -67468258 + L1MB3 LINE L1 5539 6061 -122 5243 113 26 5 chr13 34404912 34405681 -67467488 + L1PA16 LINE L1 5373 6157 -9 2306 76 33 3 chr13 34405684 34405985 -67467184 + AluY SINE Alu 1 310 -1 691 167 0 16 chr13 34406003 34406129 -67467040 + L1MB3 LINE L1 6053 6176 -7 2120 125 46 3 chr13 34407862 34408191 -67464978 + MER2 DNA MER2_type 1 343 -1 2251 80 3 3 chr13 34409120 34409421 -67463748 + AluY SINE Alu 1 301 -10 1747 169 3 13 chr13 34410081 34410382 -67462787 + AluJb SINE Alu 1 298 -14 1268 328 139 33 chr13 34410856 34411974 -67461195 - L2 LINE L2 -528 2786 1550 2160 96 0 0 chr13 34411984 34412291 -67460878 + AluSq SINE Alu 2 308 0 551 167 175 0 chr13 34412450 34412570 -67460599 - L1M4 LINE L1 -627 5557 5417 1878 116 20 14 chr13 34412673 34412965 -67460204 + AluJo SINE Alu 1 294 -18 276 30 0 0 chr13 34413159 34413192 -67459977 + (TG)n Simple_repeat Simple_repeat 2 34 0 2016 113 3 10 chr13 34413332 34413625 -67459544 - AluSg SINE Alu -19 291 1 29 0 0 0 chr13 34415434 34415463 -67457706 + GC_rich Low_complexity Low_complexity 1 29 0 279 236 0 45 chr13 34415977 34416066 -67457103 - MIR3 SINE MIR -15 193 109 327 243 38 2 chr13 34416565 34416676 -67456493 + MER67B LTR ERV1 352 661 0 180 247 0 130 chr13 34416698 34416775 -67456394 + L2 LINE L2 2995 3061 -211 230 257 284 28 chr13 34416898 34417007 -67456162 + L2 LINE L2 3172 3308 -5 181 244 0 110 chr13 34417163 34417245 -67455924 - L2 LINE L2 -14 3258 3186 1846 138 39 0 chr13 34417496 34417778 -67455391 + AluSx SINE Alu 6 298 -14 831 176 0 0 chr13 34417954 34418090 -67455079 + FLAM_C SINE Alu 2 137 -6 1554 175 10 30 chr13 34418197 34418500 -67454669 - AluJo SINE Alu -15 297 1 2152 122 0 0 chr13 34418697 34419000 -67454169 + AluSx SINE Alu 3 305 -7 1746 174 0 3 chr13 34419041 34419351 -67453818 - AluJo SINE Alu -3 309 1 1694 118 3 96 chr13 34419804 34420126 -67453043 + AluSq SINE Alu 1 292 -21 399 211 26 18 chr13 34420137 34420245 -67452924 + L1MC4 LINE L1 7466 7675 -367 853 181 0 19 chr13 34420245 34420405 -67452764 - FRAM SINE Alu -19 157 1 289 264 76 61 chr13 34420418 34420541 -67452628 + L1MC5 LINE L1 7579 7699 -343 1793 148 29 0 chr13 34420541 34420858 -67452311 + AluJo SINE Alu 1 325 0 289 264 76 61 chr13 34420858 34421014 -67452155 + L1MC5 LINE L1 7699 7968 -74 1672 137 108 0 chr13 34421048 34421326 -67451843 - AluSg SINE Alu -2 308 1 371 264 11 0 chr13 34421415 34421502 -67451667 - L2 LINE L2 0 3272 3185 500 286 93 6 chr13 34421529 34421690 -67451479 + LTR16A LTR ERVL 18 192 -258 6239 71 19 58 chr13 34421919 34423806 -67449363 + SVA Other Other 17 1386 0 2151 108 3 3 chr13 34423841 34424146 -67449023 + AluSx SINE Alu 8 312 0 737 201 67 12 chr13 34424148 34424312 -67448857 + LTR16A LTR ERVL 206 378 -72 2533 305 47 34 chr13 34424322 34424950 -67448219 + ERVL LTR ERVL 4057 4675 -1089 5246 59 6 0 chr13 34424950 34425593 -67447576 + L1PA8 LINE L1 5521 6167 -5 2533 305 47 34 chr13 34425593 34426192 -67446977 + ERVL LTR ERVL 4675 5300 -464 2115 145 92 36 chr13 34426366 34426759 -67446410 - MSTB LTR MaLR 0 426 12 259 211 18 18 chr13 34426799 34426856 -67446313 + LTR16A LTR ERVL 96 152 -298 427 231 77 17 chr13 34426890 34427007 -67446162 + LTR16A LTR ERVL 327 450 0 330 333 44 19 chr13 34427112 34427271 -67445898 - L2 LINE L2 -220 3052 2890 1633 131 37 0 chr13 34427302 34427547 -67445622 + AluSx SINE Alu 1 254 -58 1270 170 39 4 chr13 34427547 34427776 -67445393 - AluJb SINE Alu -69 243 7 433 314 0 16 chr13 34427789 34427913 -67445256 - L2 LINE L2 -540 2774 2653 2052 127 0 10 chr13 34427939 34428247 -67444922 + AluSc SINE Alu 5 309 0 1793 263 80 50 chr13 34428255 34428580 -67444589 + MER115 DNA AcHobo 114 428 -265 8290 44 0 0 chr13 34428580 34429549 -67443620 + LTR5 LTR ERVK 1 969 0 1793 263 80 50 chr13 34429549 34429660 -67443509 + MER115 DNA AcHobo 428 534 -159 1637 178 3 26 chr13 34429660 34429964 -67443205 + AluJb SINE Alu 1 297 -15 1793 263 80 50 chr13 34429964 34430089 -67443080 + MER115 DNA AcHobo 534 693 0 446 291 104 32 chr13 34430103 34430336 -67442833 + L1MEc LINE L1 1528 1929 -814 2047 117 7 7 chr13 34430336 34430634 -67442535 - AluSx SINE Alu -14 298 1 446 291 104 32 chr13 34430634 34430651 -67442518 + L1MEc LINE L1 1929 1943 -800 773 146 0 23 chr13 34430904 34431034 -67442135 - FLAM_C SINE Alu -6 137 11 22 0 0 0 chr13 34431049 34431071 -67442098 + AT_rich Low_complexity Low_complexity 1 22 0 2376 64 3 0 chr13 34431215 34431513 -67441656 - AluY SINE Alu -12 299 1 815 153 45 51 chr13 34432074 34432104 -67441065 + FAM SINE Alu 1 4294967192 -289 2887 180 68 62 chr13 34432104 34432448 -67440721 - LTR8A LTR ERV1 0 727 386 2314 82 0 13 chr13 34432448 34432763 -67440406 + AluY SINE Alu 1 311 0 2887 180 68 62 chr13 34432763 34433141 -67440028 - LTR8A LTR ERV1 -341 386 1 815 153 45 51 chr13 34433141 34433287 -67439882 + FAM SINE Alu -105 40 -9 976 227 154 18 chr13 34433730 34433899 -67439270 - MLT1J2 LTR MaLR -125 325 180 4656 125 25 11 chr13 34433899 34434619 -67438550 + MER50 LTR ERV1 1 730 -4 976 227 154 18 chr13 34434619 34434735 -67438434 - MLT1J2 LTR MaLR -270 180 1 325 171 57 14 chr13 34434746 34434816 -67438353 - MIR SINE MIR -70 192 120 383 154 0 0 chr13 34434820 34434902 -67438267 - L1MA4A LINE L1 -1 6276 6074 1523 176 120 0 chr13 34434922 34435189 -67437980 - AluJb SINE Alu -1 301 3 414 336 0 0 chr13 34435190 34435300 -67437869 - MIR SINE MIR -133 129 20 188 338 29 0 chr13 34435402 34435470 -67437699 - MIR3 SINE MIR -52 156 87 2124 103 16 13 chr13 34435533 34435664 -67437505 + AluSx SINE Alu 1 130 -182 2288 80 0 17 chr13 34435664 34435963 -67437206 + AluSp SINE Alu 1 294 -19 2124 103 16 13 chr13 34435963 34436142 -67437027 + AluSx SINE Alu 130 312 0 1863 121 15 0 chr13 34436260 34436532 -67436637 + AluSx SINE Alu 5 280 -32 204 40 0 0 chr13 34436533 34436558 -67436611 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 457 190 197 42 chr13 34436589 34436731 -67436438 + MLT1J2 LTR MaLR 162 325 -125 824 164 0 0 chr13 34437164 34437298 -67435871 + AluJo SINE Alu 1 134 -178 1760 115 12 127 chr13 34437573 34437912 -67435257 - AluSx SINE Alu -2 300 1 1243 158 95 60 chr13 34438958 34439242 -67433927 - AluJo SINE Alu -18 294 1 244 307 0 0 chr13 34439506 34439581 -67433588 + L1M4 LINE L1 3986 4060 -2086 1722 246 55 50 chr13 34439601 34440182 -67432987 + MLT1G LTR MaLR 7 590 0 330 289 127 12 chr13 34440187 34440533 -67432636 + L1M4 LINE L1 4075 4460 -1686 500 269 33 61 chr13 34440780 34440992 -67432177 + L1ME LINE L1 255 460 -5610 * 1121 238 32 94 chr13 34440983 34441484 -67431685 + L1ME LINE L1 116 562 -5508 2114 80 40 10 chr13 34441484 34441786 -67431383 - AluY SINE Alu 0 311 1 1121 238 32 94 chr13 34441786 34442095 -67431074 + L1ME LINE L1 562 888 -5182 389 257 49 83 chr13 34442100 34442306 -67430863 + L1M4 LINE L1 4474 4663 -1483 2079 113 10 0 chr13 34442306 34442597 -67430572 + AluSx SINE Alu 1 294 -18 389 257 49 83 chr13 34442597 34442775 -67430394 + L1M4 LINE L1 4663 4845 -1301 2303 177 40 42 chr13 34442927 34443430 -67429739 - L1MA10 LINE L1 -10 6324 5823 344 113 0 0 chr13 34443430 34443483 -67429686 - AluSx SINE Alu -1 301 249 1381 92 22 0 chr13 34443483 34443668 -67429501 - AluSx SINE Alu -123 189 1 1450 139 0 0 chr13 34443699 34443908 -67429261 + AluSg SINE Alu 2 210 -100 632 220 43 10 chr13 34443908 34444117 -67429052 + HAL1 LINE L1 1050 1265 -1242 1783 136 4 0 chr13 34444124 34444396 -67428773 + AluSx SINE Alu 1 273 -39 449 213 71 8 chr13 34444411 34444538 -67428631 - MIR SINE MIR -38 224 90 649 221 0 43 chr13 34444543 34444683 -67428486 - FLAM_C SINE Alu -4 139 6 1986 120 0 0 chr13 34444803 34445109 -67428060 - AluSx SINE Alu 0 306 1 1535 110 7 123 chr13 34446480 34446789 -67426380 + AluSx SINE Alu 16 288 -24 440 240 60 160 chr13 34446800 34446889 -67426280 - MIR3 SINE MIR -10 198 138 1497 151 10 67 chr13 34446889 34447188 -67425981 + AluJo SINE Alu 1 282 -30 440 240 60 160 chr13 34447188 34447298 -67425871 - MIR3 SINE MIR -70 138 19 243 268 155 54 chr13 34447571 34447739 -67425430 + MLT1L LTR MaLR 1 185 -430 2008 130 0 7 chr13 34447860 34448159 -67425010 - AluSq SINE Alu -16 297 1 568 265 48 32 chr13 34448227 34448416 -67424753 + MLT1L LTR MaLR 411 602 -13 316 233 93 0 chr13 34448420 34448506 -67424663 + MIR SINE MIR 107 200 -62 2174 110 0 3 chr13 34448840 34449150 -67424019 - AluSg SINE Alu -1 309 1 237 296 12 0 chr13 34449150 34449231 -67423938 + L1ME LINE L1 5603 5684 -437 2227 67 24 7 chr13 34449354 34449652 -67423517 + AluY SINE Alu 1 303 -8 713 43 0 11 chr13 34450386 34450480 -67422689 + (TTATA)n Simple_repeat Simple_repeat 5 97 0 1837 152 0 14 chr13 34450481 34450777 -67422392 - AluJo SINE Alu -20 292 1 2349 58 3 0 chr13 34450814 34451108 -67422061 + AluY SINE Alu 1 295 -16 374 229 26 52 chr13 34451552 34451705 -67421464 - MER20B DNA MER1_type -19 764 616 261 0 0 0 chr13 34451711 34451740 -67421429 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1312 133 35 0 chr13 34451743 34451946 -67421223 - AluJo SINE Alu -30 282 73 400 197 0 40 chr13 34452057 34452133 -67421036 - AluJo SINE Alu -228 74 2 * 1520 248 45 73 chr13 34452133 34452501 -67420668 - MER20B DNA MER1_type -169 614 263 2028 107 0 0 chr13 34452501 34452841 -67420328 - AluSg SINE Alu 0 340 1 1520 248 45 73 chr13 34452841 34453004 -67420165 - MER20B DNA MER1_type -520 263 97 641 271 42 47 chr13 34454533 34454725 -67418444 - MIR SINE MIR -28 234 44 2109 66 0 0 chr13 34455882 34456141 -67417028 - AluSc SINE Alu -12 297 39 210 71 0 0 chr13 34456327 34456355 -67416814 + (T)n Simple_repeat Simple_repeat 1 28 0 2079 124 0 0 chr13 34456368 34456666 -67416503 + AluSx SINE Alu 1 298 -14 1692 164 4 0 chr13 34456673 34456953 -67416216 - AluJb SINE Alu -30 282 2 2225 103 0 0 chr13 34457134 34457444 -67415725 - AluSg SINE Alu 0 310 1 904 154 143 0 chr13 34457472 34457647 -67415522 + AluSg/x SINE Alu 84 283 -27 217 0 61 0 chr13 34457652 34457685 -67415484 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1746 122 13 55 chr13 34458368 34458679 -67414490 + AluSx SINE Alu 1 298 -14 945 129 0 0 chr13 34458680 34458870 -67414299 + AluJb SINE Alu 142 331 0 1772 133 35 90 chr13 34458981 34459349 -67413820 + MER7A DNA MER2_type 1 346 0 742 144 0 24 chr13 34459803 34459928 -67413241 - FLAM_C SINE Alu -19 124 3 1679 139 31 17 chr13 34460690 34461005 -67412164 + AluJo SINE Alu 1 312 0 1594 143 16 0 chr13 34461161 34461412 -67411757 + AluSx SINE Alu 45 299 -13 26 50 0 0 chr13 34461765 34461805 -67411364 + AT_rich Low_complexity Low_complexity 1 40 0 210 268 18 0 chr13 34462198 34462254 -67410915 - L3 LINE CR1 -162 1415 1359 230 314 57 14 chr13 34462385 34462455 -67410714 - L2 LINE L2 -37 3276 3204 549 274 104 38 chr13 34462528 34462740 -67410429 - MIR SINE MIR -14 248 23 705 301 59 80 chr13 34463410 34463856 -67409313 - L1MEd LINE L1 -5364 755 328 2136 103 0 7 chr13 34463856 34464156 -67409013 + AluSg SINE Alu 3 300 -10 705 301 59 80 chr13 34464156 34464434 -67408735 - L1MEd LINE L1 -5791 328 46 4420 101 23 3 chr13 34464968 34465574 -67407595 - MER51A LTR ERV1 -16 618 1 1701 159 7 3 chr13 34466707 34467003 -67406166 - AluJb SINE Alu -10 302 6 709 141 17 85 chr13 34467009 34467035 -67406134 + MER67C LTR ERV1 8 34 -676 917 179 41 9 chr13 34467035 34467253 -67405916 + L1MA4 LINE L1 6072 6296 -4 709 141 17 85 chr13 34467253 34467403 -67405766 + MER67C LTR ERV1 34 172 -538 666 238 12 12 chr13 34467404 34467572 -67405597 + FRAM SINE Alu 1 168 -8 2875 180 49 9 chr13 34467572 34468106 -67405063 + MER67C LTR ERV1 156 710 0 405 0 0 0 chr13 34468409 34468454 -67404715 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1415 162 7 57 chr13 34468457 34468627 -67404542 - AluJo SINE Alu -30 282 132 2053 115 0 10 chr13 34468627 34468923 -67404246 + AluSp SINE Alu 1 293 -20 1415 162 7 57 chr13 34468923 34469049 -67404120 - AluJo SINE Alu -180 132 1 561 298 35 29 chr13 34469637 34469808 -67403361 + MIR SINE MIR 21 192 -70 1526 171 7 20 chr13 34469862 34470154 -67403015 - AluJo SINE Alu -24 288 1 192 293 40 91 chr13 34470169 34470268 -67402901 - L2 LINE L2 -38 3234 3141 281 226 0 128 chr13 34471171 34471273 -67401896 - LTR33 LTR ERVL -432 89 1 599 175 0 47 chr13 34471924 34472160 -67401009 + GA-rich Low_complexity Low_complexity 1 224 0 278 289 0 40 chr13 34472160 34472179 -67400990 + polypurine Low_complexity Low_complexity 1 72 0 1969 148 3 0 chr13 34472179 34472544 -67400625 + AluSx SINE Alu 1 366 0 214 151 0 75 chr13 34472569 34472622 -67400547 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 387 285 199 5 chr13 34472805 34472991 -67400178 - MIR SINE MIR -18 244 23 295 271 107 0 chr13 34473070 34473192 -67399977 + HAL1 LINE L1 320 454 -2053 1875 134 6 16 chr13 34473250 34473563 -67399606 + AluJb SINE Alu 1 310 -2 651 276 110 46 chr13 34473800 34473929 -67399240 - L1MC4 LINE L1 -1 8041 7922 2092 139 0 0 chr13 34473929 34474239 -67398930 - AluSx SINE Alu -2 310 1 651 276 110 46 chr13 34474239 34474718 -67398451 - L1MC4 LINE L1 -120 7922 7365 2358 78 0 0 chr13 34474718 34475025 -67398144 - AluY SINE Alu -4 307 1 651 276 110 46 chr13 34475025 34475173 -67397996 - L1MC4 LINE L1 -677 7365 7228 346 233 78 11 chr13 34475222 34475312 -67397857 + HAL1 LINE L1 812 907 -1600 555 276 70 60 chr13 34475312 34475482 -67397687 + HAL1 LINE L1 866 1033 -1474 1793 140 23 30 chr13 34475482 34475782 -67397387 - AluJo SINE Alu -14 298 1 555 276 70 60 chr13 34475782 34475912 -67397257 + HAL1 LINE L1 1033 1160 -1347 2174 119 0 0 chr13 34475912 34476222 -67396947 + AluSg SINE Alu 1 310 0 555 276 70 60 chr13 34476222 34476351 -67396818 + HAL1 LINE L1 1160 1300 -1207 1590 136 81 34 chr13 34476353 34476648 -67396521 + AluJb SINE Alu 1 309 -3 398 156 16 148 chr13 34476663 34476785 -67396384 + L1MA9 LINE L1 6156 6269 -30 25 51 0 0 chr13 34476786 34476825 -67396344 + AT_rich Low_complexity Low_complexity 1 39 0 526 164 229 0 chr13 34476831 34476971 -67396198 + HAL1 LINE L1 1372 1543 -964 2208 109 0 3 chr13 34476974 34477278 -67395891 + AluSx SINE Alu 1 303 -9 1877 140 0 7 chr13 34477289 34477589 -67395580 + AluJo SINE Alu 1 298 -14 2364 49 0 0 chr13 34477592 34477928 -67395241 + AluY SINE Alu 1 336 0 3411 198 94 7 chr13 34477958 34478796 -67394373 + L1MC4a LINE L1 6898 7808 0 1833 234 115 39 chr13 34478799 34479471 -67393698 + HAL1 LINE L1 1553 2275 -232 450 270 0 0 chr13 34479879 34479994 -67393175 + MER103 DNA DNA 2 116 -50 2195 125 0 0 chr13 34480732 34481044 -67392125 + AluSx SINE Alu 1 312 0 243 140 0 0 chr13 34482169 34482219 -67390950 + (G)n Simple_repeat Simple_repeat 1 50 0 1374 168 37 0 chr13 34483034 34483278 -67389891 + AluJo SINE Alu 38 290 -22 299 262 159 19 chr13 34483279 34483386 -67389783 + MIR3 SINE MIR 81 202 -6 1831 145 33 3 chr13 34483937 34484240 -67388929 + AluJb SINE Alu 1 312 0 31 0 0 0 chr13 34484633 34484664 -67388505 + AT_rich Low_complexity Low_complexity 1 31 0 765 192 0 0 chr13 34484664 34484794 -67388375 - FLAM_C SINE Alu -12 131 2 1836 167 16 87 chr13 34485231 34485657 -67387512 - MSTD LTR MaLR 0 396 1 1622 158 16 41 chr13 34485860 34486176 -67386993 + AluJo SINE Alu 3 310 -2 575 215 98 31 chr13 34486247 34486307 -67386862 - MER104 DNA Tc2 -1724 174 119 1429 121 8 163 chr13 34486307 34486670 -67386499 + AluJb SINE Alu 1 307 -5 575 215 98 31 chr13 34486670 34486772 -67386397 - MER104 DNA Tc2 -1779 119 1 28 0 0 0 chr13 34487293 34487321 -67385848 + AT_rich Low_complexity Low_complexity 1 28 0 312 209 9 0 chr13 34487330 34487407 -67385762 + L1MA4A LINE L1 6210 6290 -10 2221 121 108 5 chr13 34487463 34487851 -67385318 - MSTA LTR MaLR 0 428 1 1053 191 39 0 chr13 34488015 34488219 -67384950 + AluJb SINE Alu 86 297 -15 341 204 186 54 chr13 34488219 34488386 -67384783 - L1ME3A LINE L1 -19 6151 5963 841 152 7 0 chr13 34488396 34488534 -67384635 - FLAM_C SINE Alu -4 139 1 1136 200 169 31 chr13 34488534 34488687 -67384482 - L1ME3A LINE L1 -196 5974 5843 1648 153 14 11 chr13 34488687 34488974 -67384195 - AluJb SINE Alu -24 288 1 1136 200 169 31 chr13 34488974 34489140 -67384029 - L1ME3A LINE L1 -327 5843 5611 344 143 14 0 chr13 34489360 34489430 -67383739 + GA-rich Low_complexity Low_complexity 2 72 0 2070 105 3 16 chr13 34491550 34491854 -67381315 - AluSg SINE Alu -10 300 1 1800 158 16 13 chr13 34492183 34492494 -67380675 - AluJb SINE Alu 0 312 1 2267 67 40 0 chr13 34493214 34493511 -67379658 + AluY SINE Alu 1 309 -2 2107 105 0 0 chr13 34493528 34493813 -67379356 + AluSq SINE Alu 1 285 -28 1871 126 16 48 chr13 34494672 34494847 -67378322 - AluSq SINE Alu -13 300 138 2050 110 3 0 chr13 34494847 34495129 -67378040 - AluSx SINE Alu -29 283 1 1871 126 16 48 chr13 34495129 34495263 -67377906 - AluSq SINE Alu -175 138 1 239 320 140 22 chr13 34495300 34495478 -67377691 - L2 LINE L2 -44 3228 3030 2144 199 24 46 chr13 34495478 34495981 -67377188 - LTR53 LTR ERVL 0 519 28 2249 93 0 6 chr13 34495987 34496299 -67376870 + AluY SINE Alu 1 310 -1 1142 112 18 0 chr13 34496299 34496468 -67376701 + AluSg/x SINE Alu 132 303 -7 258 163 23 0 chr13 34496468 34496511 -67376658 - LTR53 LTR ERVL -475 44 1 204 186 186 0 chr13 34496540 34496599 -67376570 - L2 LINE L2 -302 2970 2901 212 317 17 0 chr13 34497078 34497138 -67376031 + MER5A DNA MER1_type 128 188 -1 715 213 0 0 chr13 34497215 34497342 -67375827 - FLAM_A SINE Alu -6 127 1 2347 62 3 3 chr13 34497850 34498154 -67375015 + AluY SINE Alu 1 304 -7 2247 91 0 0 chr13 34498440 34498737 -67374432 - AluY SINE Alu -14 297 1 1174 188 0 5 chr13 34498751 34498974 -67374195 - AluJo SINE Alu -4 308 87 1154 156 72 54 chr13 34498983 34499259 -67373910 - L1MB7 LINE L1 -2 6182 5902 309 241 134 18 chr13 34500436 34500548 -67372621 - HAL1b LINE L1 -519 829 705 1747 152 7 20 chr13 34500695 34500997 -67372172 - AluSx SINE Alu -14 298 1 204 279 0 0 chr13 34501243 34501286 -67371883 + MIR SINE MIR 109 151 -57 212 386 24 24 chr13 34501480 34501607 -67371562 + L2 LINE L2 2966 3092 -180 225 257 79 63 chr13 34501890 34502102 -67371067 + L2 LINE L2 2998 3293 -20 1473 152 54 123 chr13 34502126 34502141 -67371028 + L1MD2 LINE L1 5297 5311 -1048 198 71 0 0 chr13 34502141 34502169 -67371000 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1473 152 54 123 chr13 34502169 34502336 -67370833 + L1MD2 LINE L1 5311 5488 -871 2035 129 3 6 chr13 34502336 34502647 -67370522 + AluSg SINE Alu 1 310 0 1473 152 54 123 chr13 34502647 34502986 -67370183 + L1MD2 LINE L1 5488 5849 -510 2030 129 3 0 chr13 34502986 34503295 -67369874 - AluSx SINE Alu -2 310 1 1473 152 54 123 chr13 34503295 34503521 -67369648 + L1MD2 LINE L1 5849 6089 -270 284 0 28 0 chr13 34503521 34503557 -67369612 + (CA)n Simple_repeat Simple_repeat 2 38 0 1473 152 54 123 chr13 34503557 34503673 -67369496 + L1MD2 LINE L1 6089 6211 -148 2048 97 24 3 chr13 34503673 34503962 -67369207 - AluSq SINE Alu -18 295 1 1473 152 54 123 chr13 34503962 34504100 -67369069 + L1MD2 LINE L1 6211 6358 -1 3773 181 46 36 chr13 34504420 34504621 -67368548 - L1MB3 LINE L1 -66 6117 5919 1425 160 21 108 chr13 34504621 34505002 -67368167 - MER7A DNA MER2_type 0 346 1 3773 181 46 36 chr13 34505002 34505623 -67367546 - L1MB3 LINE L1 -264 5919 5287 2250 69 0 3 chr13 34505868 34506190 -67366979 + AluY SINE Alu 1 321 0 936 108 15 0 chr13 34507185 34507315 -67365854 + AluSx SINE Alu 1 132 -181 1108 145 102 0 chr13 34507324 34507510 -67365659 - LTR12 LTR ERV1 -133 581 377 268 265 29 20 chr13 34507510 34507612 -67365557 - LTR30 LTR ERV1 -79 643 541 2859 159 150 27 chr13 34507612 34508395 -67364774 - pTR5 LTR ERV1 -440 1523 5 1040 152 23 6 chr13 34508407 34508578 -67364591 + AluSx SINE Alu 119 292 -18 1609 166 38 17 chr13 34509071 34509361 -67363808 - AluJo SINE Alu -16 296 1 2210 97 0 10 chr13 34510113 34510412 -67362757 + AluSc SINE Alu 14 309 0 22 0 0 0 chr13 34510578 34510600 -67362569 + AT_rich Low_complexity Low_complexity 1 22 0 2329 98 7 0 chr13 34510854 34511149 -67362020 - AluSx SINE Alu -15 297 1 181 167 48 48 chr13 34512172 34512214 -67360955 - MER5B DNA MER1_type -135 43 2 202 288 106 0 chr13 34512232 34512298 -67360871 - MIR SINE MIR -71 191 119 189 74 0 0 chr13 34512514 34512541 -67360628 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 2050 103 0 4 chr13 34512544 34512817 -67360352 - AluSx SINE Alu -24 288 17 2143 74 13 17 chr13 34512817 34513115 -67360054 + AluY SINE Alu 15 311 0 1012 238 98 22 chr13 34513213 34513831 -67359338 + L1MD3 LINE L1 5449 6161 -5 383 234 57 91 chr13 34513903 34513945 -67359224 + L1M4 LINE L1 4384 4426 -1720 1960 125 7 17 chr13 34513945 34514241 -67358928 + AluSx SINE Alu 1 293 -19 383 234 57 91 chr13 34514241 34514463 -67358706 + L1M4 LINE L1 4426 4639 -1507 1228 130 0 0 chr13 34514468 34514637 -67358532 - AluSg/x SINE Alu -18 294 126 352 325 69 39 chr13 34514701 34514932 -67358237 + L1M4 LINE L1 4689 4926 -1220 231 254 0 0 chr13 34514990 34515053 -67358116 + L1M4 LINE L1 5265 5327 -819 2128 105 32 0 chr13 34515149 34515434 -67357735 + AluSg SINE Alu 1 294 -16 1571 132 45 69 chr13 34516362 34516651 -67356518 - AluJo SINE Alu -22 290 9 383 244 93 138 chr13 34516986 34517342 -67355827 + LTR40a LTR ERVL 1 340 -179 282 188 109 0 chr13 34517351 34517415 -67355754 + LTR40a LTR ERVL 448 518 -1 233 189 94 19 chr13 34517460 34517513 -67355656 + L2 LINE L2 2718 2774 -540 2597 62 0 0 chr13 34517994 34518299 -67354870 + AluY SINE Alu 1 305 -6 2126 126 3 0 chr13 34518907 34519200 -67353969 - AluSg SINE Alu -13 297 4 2197 109 0 22 chr13 34519432 34519743 -67353426 + AluSx SINE Alu 9 312 0 216 97 0 0 chr13 34520029 34520060 -67353109 + (TG)n Simple_repeat Simple_repeat 1 31 0 409 265 169 5 chr13 34520173 34520362 -67352807 + MIR SINE MIR 21 240 -22 23 92 0 0 chr13 34520851 34520916 -67352253 + GC_rich Low_complexity Low_complexity 1 65 0 253 286 22 0 chr13 34521043 34521134 -67352035 + (CGGGG)n Simple_repeat Simple_repeat 5 97 0 4850 69 60 22 chr13 34521624 34521707 -67351462 + PABL_A LTR ERV1 1 79 -581 2543 34 10 0 chr13 34521707 34522002 -67351167 + AluY SINE Alu 1 298 -13 4850 69 60 22 chr13 34522002 34522554 -67350615 + PABL_A LTR ERV1 79 660 0 1236 136 95 66 chr13 34522571 34522883 -67350286 + L1MB2 LINE L1 5855 6171 0 521 253 59 38 chr13 34522933 34523119 -67350050 + L2 LINE L2 3120 3309 -4 858 298 189 43 chr13 34523196 34524258 -67348911 + L2 LINE L2 1758 2974 -340 234 200 53 80 chr13 34524442 34524517 -67348652 + L2 LINE L2 3185 3257 -15 187 326 128 29 chr13 34524665 34524837 -67348332 + L3 LINE CR1 875 1063 -514 1382 153 98 29 chr13 34525043 34525318 -67347851 - AluJb SINE Alu -16 296 3 1288 154 14 32 chr13 34526256 34526477 -67346692 + MER20 DNA MER1_type 1 217 -2 2103 95 42 0 chr13 34526484 34526769 -67346400 + AluSq SINE Alu 1 297 -16 826 137 0 32 chr13 34527137 34527261 -67345908 - FLAM_A SINE Alu -10 123 4 1364 190 15 15 chr13 34527621 34527890 -67345279 + MLT1C LTR MaLR 199 467 0 4993 130 43 26 chr13 34527966 34528736 -67344433 + LTR39 LTR ERV1 1 783 0 21 36 0 0 chr13 34529961 34529989 -67343180 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 34531589 34531627 -67341542 + AT_rich Low_complexity Low_complexity 1 38 0 262 341 24 0 chr13 34532303 34532388 -67340781 - MIR SINE MIR -65 143 57 2318 68 0 24 chr13 34532426 34532722 -67340447 - AluY SINE Alu -20 291 3 2384 78 10 3 chr13 34532728 34533036 -67340133 - AluSg SINE Alu 0 310 1 223 333 32 21 chr13 34533588 34533681 -67339488 + MIR SINE MIR 38 131 -77 2168 87 38 10 chr13 34533696 34534052 -67339117 + AluSp SINE Alu 1 313 0 22 0 0 0 chr13 34534098 34534120 -67339049 + AT_rich Low_complexity Low_complexity 1 22 0 283 225 108 27 chr13 34534494 34534605 -67338564 + MER103 DNA DNA 2 121 -45 2280 117 0 0 chr13 34534633 34534932 -67338237 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr13 34535359 34535383 -67337786 + AT_rich Low_complexity Low_complexity 1 24 0 912 137 0 0 chr13 34535405 34535536 -67337633 + FAM SINE Alu 33 163 -22 372 200 109 36 chr13 34536137 34536247 -67336922 - L2 LINE L2 0 3313 3196 2607 55 0 3 chr13 34536296 34536605 -67336564 - AluY SINE Alu -3 308 1 24 0 0 0 chr13 34536662 34536686 -67336483 + AT_rich Low_complexity Low_complexity 1 24 0 341 272 10 0 chr13 34536872 34536975 -67336194 + L1MC4 LINE L1 7932 8035 -7 2516 87 0 0 chr13 34537541 34537851 -67335318 - AluY SINE Alu -1 310 1 2572 173 30 25 chr13 34537855 34538400 -67334769 + L1MB4 LINE L1 5417 5969 -201 2415 74 7 0 chr13 34538677 34538973 -67334196 + AluSg SINE Alu 1 298 -12 2074 125 3 3 chr13 34539536 34539823 -67333346 + AluSx SINE Alu 1 287 -25 21 0 0 0 chr13 34539823 34539844 -67333325 + AT_rich Low_complexity Low_complexity 1 21 0 275 354 164 18 chr13 34539926 34540316 -67332853 - L2 LINE L2 -647 2667 2221 961 243 45 29 chr13 34541712 34542225 -67330944 + L1MC/D LINE L1 1006 1635 -4905 645 301 71 55 chr13 34542352 34542854 -67330315 + L1MC/D LINE L1 2427 2913 -3627 207 0 0 0 chr13 34542854 34542877 -67330292 + (CA)n Simple_repeat Simple_repeat 2 24 0 645 301 71 55 chr13 34542877 34542960 -67330209 + L1MC/D LINE L1 2913 2993 -3547 369 0 0 0 chr13 34543191 34543232 -67329937 + (CA)n Simple_repeat Simple_repeat 2 42 0 2139 141 0 0 chr13 34543256 34543560 -67329609 - AluSx SINE Alu -8 304 1 264 289 0 0 chr13 34543587 34543663 -67329506 + L1P LINE L1 2942 3017 -3129 520 124 0 62 chr13 34543666 34543763 -67329406 + L1MC1 LINE L1 6079 6169 -164 30 45 0 0 chr13 34544330 34544374 -67328795 + AT_rich Low_complexity Low_complexity 1 44 0 309 326 26 17 chr13 34544387 34544620 -67328549 + L1MC/D LINE L1 4078 4312 -2228 1158 227 64 6 chr13 34544707 34545095 -67328074 + L1MC/D LINE L1 5497 5921 -743 942 243 64 12 chr13 34545251 34545502 -67327667 + L1MC/D LINE L1 5937 6200 -2002 533 143 48 0 chr13 34545715 34545799 -67327370 - AluJo SINE Alu -175 137 50 2008 145 3 0 chr13 34546004 34546294 -67326875 - AluSx SINE Alu -21 291 1 230 268 79 55 chr13 34546316 34546480 -67326689 + L2 LINE L2 2078 2245 -1069 1307 104 6 0 chr13 34546833 34547016 -67326153 + AluSg/x SINE Alu 129 312 0 634 238 50 44 chr13 34547166 34547347 -67325822 + MIR SINE MIR 77 258 -4 416 360 81 0 chr13 34547604 34547765 -67325404 + MIR SINE MIR 20 193 -69 381 261 50 39 chr13 34548867 34549008 -67324161 + MIR SINE MIR 42 183 -60 1686 142 98 0 chr13 34550031 34550306 -67322863 + AluSx SINE Alu 1 302 -10 2118 124 7 7 chr13 34550491 34550798 -67322371 + AluSx SINE Alu 1 307 -5 2287 61 0 4 chr13 34551094 34551373 -67321796 + AluY SINE Alu 1 278 -33 180 0 0 0 chr13 34551376 34551396 -67321773 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr13 34552387 34552409 -67320760 + (A)n Simple_repeat Simple_repeat 1 22 0 21 36 0 0 chr13 34552673 34552701 -67320468 + AT_rich Low_complexity Low_complexity 1 28 0 2065 160 89 83 chr13 34552704 34552846 -67320323 - L1MB8 LINE L1 -2 6176 6036 2283 103 0 0 chr13 34552846 34553137 -67320032 + AluSg1 SINE Alu 1 291 -18 2453 88 3 0 chr13 34553147 34553453 -67319716 + AluSc SINE Alu 1 307 -2 2065 160 89 83 chr13 34553453 34553863 -67319306 - L1MB8 LINE L1 -150 6028 5610 2443 63 0 13 chr13 34553863 34554163 -67319006 - AluY SINE Alu -15 296 1 1626 186 4 0 chr13 34554163 34554443 -67318726 - AluJb SINE Alu -21 291 11 301 241 25 13 chr13 34554455 34554534 -67318635 + MER113 DNA MER1_type? 408 487 -34 2051 143 7 0 chr13 34555203 34555497 -67317672 - AluSx SINE Alu -15 297 2 1728 158 0 35 chr13 34556230 34556515 -67316654 + AluJo SINE Alu 14 288 -24 2319 114 0 0 chr13 34556724 34557031 -67316138 + AluSx SINE Alu 3 309 -3 8196 115 41 33 chr13 34557162 34557510 -67315659 + HSMAR2 DNA Mariner 2 346 -956 2512 64 0 0 chr13 34557510 34557808 -67315361 + AluY SINE Alu 1 298 -13 8196 115 41 33 chr13 34557808 34558747 -67314422 + HSMAR2 DNA Mariner 346 1299 -3 288 305 225 42 chr13 34559039 34559059 -67314110 - MIR SINE MIR 0 262 247 2363 79 13 0 chr13 34559059 34559364 -67313805 + AluY SINE Alu 1 309 -2 288 305 225 42 chr13 34559364 34559556 -67313613 - MIR SINE MIR -15 247 11 368 211 73 28 chr13 34559605 34559714 -67313455 + L1ME3A LINE L1 6042 6155 -15 2153 100 47 3 chr13 34559807 34560106 -67313063 + AluSx SINE Alu 1 312 0 25 0 0 0 chr13 34560152 34560177 -67312992 + AT_rich Low_complexity Low_complexity 1 25 0 1335 32 0 0 chr13 34560177 34560333 -67312836 - L1PA3 LINE L1 -2 6153 5998 2210 92 0 14 chr13 34560343 34560636 -67312533 - AluY SINE Alu -22 289 1 1869 144 0 46 chr13 34560639 34560945 -67312224 - AluJb SINE Alu -20 292 1 2107 131 0 7 chr13 34562839 34563145 -67310024 - AluSx SINE Alu -8 304 1 451 271 125 56 chr13 34563316 34563619 -67309550 + MLT1H LTR MaLR 226 549 0 336 256 43 57 chr13 34563704 34563934 -67309235 - L1M4 LINE L1 -3135 3011 2785 675 215 70 17 chr13 34564096 34564268 -67308901 - MER119 DNA MER1_type -400 183 3 276 100 0 0 chr13 34564456 34564496 -67308673 + (TA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr13 34564496 34564532 -67308637 + (GA)n Simple_repeat Simple_repeat 1 36 0 546 265 86 60 chr13 34564619 34564683 -67308486 - Charlie2 DNA MER1_type -2307 475 414 2253 88 3 3 chr13 34564683 34564978 -67308191 - AluSp SINE Alu -18 295 1 546 265 86 60 chr13 34564978 34565181 -67307988 - Charlie2 DNA MER1_type -2368 414 201 244 233 82 0 chr13 34565346 34565419 -67307750 - MER116 DNA Mariner -1 79 1 4341 216 65 35 chr13 34566047 34567107 -67306062 - L1MD2 LINE L1 0 6359 5332 525 16 0 0 chr13 34567107 34567169 -67306000 + (TG)n Simple_repeat Simple_repeat 2 63 0 824 211 0 12 chr13 34567169 34567330 -67305839 - FAM SINE Alu -16 159 1 4341 216 65 35 chr13 34567330 34568577 -67304592 - L1MD2 LINE L1 -1026 5333 3962 246 233 50 0 chr13 34568945 34569005 -67304164 + MIR SINE MIR 64 126 -136 255 230 27 40 chr13 34569200 34569274 -67303895 + MER5C DNA MER1_type 4 76 -248 4352 145 65 47 chr13 34569424 34569525 -67303644 - L1MA8 LINE L1 -4 6287 6189 1829 173 17 3 chr13 34569525 34569820 -67303349 + AluSx SINE Alu 1 299 -13 4352 145 65 47 chr13 34569820 34569939 -67303230 - L1MA8 LINE L1 -102 6189 6074 2077 148 77 0 chr13 34569939 34570277 -67302892 + THE1B LTR MaLR 1 364 0 4352 145 65 47 chr13 34570277 34571013 -67302156 - L1MA8 LINE L1 -217 6074 5285 2411 68 0 3 chr13 34571013 34571306 -67301863 - AluY SINE Alu -15 296 5 4352 145 65 47 chr13 34571306 34571778 -67301391 - L1MA8 LINE L1 -1006 5285 4823 1579 165 16 3 chr13 34572004 34572325 -67300844 - L1MA8 LINE L1 -1330 4816 4492 781 229 139 11 chr13 34573516 34573783 -67299386 + L1ME3A LINE L1 5870 6170 0 933 96 0 0 chr13 34574154 34574269 -67298900 - AluSx SINE Alu -137 175 61 331 309 107 34 chr13 34574469 34574647 -67298522 + L2 LINE L2 3005 3195 -118 21 36 0 0 chr13 34574795 34574823 -67298346 + AT_rich Low_complexity Low_complexity 1 28 0 2193 112 10 0 chr13 34574919 34575213 -67297956 - AluSx SINE Alu -15 297 1 21 0 0 0 chr13 34575305 34575326 -67297843 + AT_rich Low_complexity Low_complexity 1 21 0 2475 81 0 0 chr13 34575338 34575645 -67297524 + AluY SINE Alu 1 307 -4 1452 157 56 94 chr13 34575737 34576056 -67297113 + AluJb SINE Alu 1 307 -5 210 242 187 11 chr13 34576268 34576359 -67296810 + MIR SINE MIR 155 261 -1 2117 117 0 16 chr13 34576616 34576932 -67296237 + AluSx SINE Alu 1 311 -1 1937 153 20 3 chr13 34576965 34577266 -67295903 + AluSx SINE Alu 1 306 -6 305 262 0 12 chr13 34577675 34577759 -67295410 + LTR67 LTR ERVL 458 540 -17 248 270 11 11 chr13 34577995 34578084 -67295085 - L1M4 LINE L1 -2319 3827 3739 214 346 59 7 chr13 34579493 34579646 -67293523 + L2 LINE L2 2144 2304 -1010 407 219 42 10 chr13 34579727 34579823 -67293346 + MER58 DNA MER1_type 1 99 -242 398 184 11 0 chr13 34579839 34579926 -67293243 + MER58 DNA MER1_type 2324 2411 -9 1047 229 106 29 chr13 34579927 34580202 -67292967 + AluJb SINE Alu 1 296 -6 2217 113 0 0 chr13 34580266 34580559 -67292610 + AluSx SINE Alu 1 293 -19 398 259 142 77 chr13 34580690 34581107 -67292062 + L2 LINE L2 2318 2761 -553 1913 146 17 0 chr13 34581183 34581477 -67291692 + AluJo SINE Alu 1 299 -13 2662 52 3 0 chr13 34582303 34582613 -67290556 + AluY SINE Alu 1 311 0 469 289 25 47 chr13 34582661 34582896 -67290273 + HAL1b LINE L1 149 378 -970 255 235 29 0 chr13 34583059 34583127 -67290042 + HAL1b LINE L1 668 737 -611 1786 147 40 25 chr13 34583143 34583469 -67289700 + MER1B DNA MER1_type 9 339 0 1968 140 7 19 chr13 34583571 34583879 -67289290 + AluSx SINE Alu 1 304 -8 1725 257 113 27 chr13 34583969 34585071 -67288098 + L1MD1 LINE L1 2980 4228 -1918 2251 86 13 3 chr13 34585071 34585372 -67287797 + AluSc SINE Alu 1 304 -5 1725 257 113 27 chr13 34585372 34585538 -67287631 + L1MD1 LINE L1 4228 4378 -1768 1674 177 0 20 chr13 34585543 34585843 -67287326 + AluJb SINE Alu 1 294 -18 1583 171 43 21 chr13 34585854 34586135 -67287034 + AluJo SINE Alu 11 297 -15 2446 212 70 22 chr13 34586135 34587249 -67285920 + L1MD1 LINE L1 4504 5704 -538 189 0 0 0 chr13 34587249 34587270 -67285899 + (CA)n Simple_repeat Simple_repeat 2 22 0 2446 212 70 22 chr13 34587270 34587430 -67285739 + L1MD1 LINE L1 5704 5855 -387 617 155 26 0 chr13 34587435 34587551 -67285618 + L1MD1 LINE L1 6108 6226 -16 338 298 126 79 chr13 34587808 34588278 -67284891 + L1MC4a LINE L1 6126 6617 -1191 202 188 58 0 chr13 34588279 34588348 -67284821 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 1428 230 40 89 chr13 34588483 34588899 -67284270 + L1MC5 LINE L1 6749 7184 -777 3444 128 29 6 chr13 34588899 34589414 -67283755 - MER1A DNA MER1_type 0 527 1 1428 230 40 89 chr13 34589414 34589698 -67283471 + L1MC5 LINE L1 7184 7404 -557 1717 164 44 17 chr13 34589698 34589996 -67283173 + AluJb SINE Alu 1 306 -6 1428 230 40 89 chr13 34589996 34590139 -67283030 + L1MC5 LINE L1 7404 7552 -409 469 87 0 14 chr13 34590139 34590208 -67282961 + MLT2B3 LTR ERVL 1 68 -486 585 204 24 22 chr13 34590308 34590512 -67282657 + MLT2B3 LTR ERVL 78 326 -189 9736 31 4 179 chr13 34590759 34592432 -67280737 + SVA Other Other 1 1379 -7 26 0 0 0 chr13 34592432 34592458 -67280711 + AT_rich Low_complexity Low_complexity 1 26 0 494 253 66 50 chr13 34592759 34593130 -67280039 + L1MEd LINE L1 892 1306 -4869 960 98 23 0 chr13 34593210 34593342 -67279827 + AluSq/x SINE Alu 1 135 -177 1778 172 10 10 chr13 34593342 34593645 -67279524 + AluJo SINE Alu 1 303 -9 252 0 0 0 chr13 34593676 34593704 -67279465 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 438 299 236 35 chr13 34593734 34594750 -67278419 + L2 LINE L2 1050 2269 -1045 495 113 65 48 chr13 34594953 34595077 -67278092 - L1MB8 LINE L1 -5 6173 6048 851 110 8 24 chr13 34595077 34595193 -67277976 - FLAM_C SINE Alu -196 116 1 377 220 0 51 chr13 34595194 34595312 -67277857 - L1MB7 LINE L1 -129 6055 5944 210 289 157 31 chr13 34595471 34595630 -67277539 + L2 LINE L2 2244 2422 -892 * 212 286 116 0 chr13 34595628 34595740 -67277429 + MIR SINE MIR 132 256 -6 373 239 134 16 chr13 34595798 34596045 -67277124 - L1MEd LINE L1 -5155 964 689 28 0 0 0 chr13 34596554 34596582 -67276587 + AT_rich Low_complexity Low_complexity 1 28 0 2543 62 0 3 chr13 34596698 34597003 -67276166 + AluSx SINE Alu 7 310 -2 289 191 0 48 chr13 34597047 34597131 -67276038 + L1MA10 LINE L1 6202 6281 -53 388 270 30 0 chr13 34597234 34597334 -67275835 + MIR SINE MIR 63 165 -97 2099 95 0 4 chr13 34597585 34597859 -67275310 + AluSg SINE Alu 27 299 -11 389 262 18 50 chr13 34597925 34598280 -67274889 - L1MEc LINE L1 -3913 2339 2003 495 319 90 32 chr13 34598363 34598739 -67274430 - L1MEc LINE L1 -5663 542 145 3652 192 83 10 chr13 34598839 34599741 -67273428 - L1MB7 LINE L1 -9 6175 5162 1718 183 33 13 chr13 34599741 34600041 -67273128 - AluJb SINE Alu -6 306 1 3652 192 83 10 chr13 34600041 34600384 -67272785 - L1MB7 LINE L1 -1022 5162 4846 228 67 0 0 chr13 34600396 34600426 -67272743 + (A)n Simple_repeat Simple_repeat 1 30 0 949 178 4 54 chr13 34600448 34600689 -67272480 - L1MB7 LINE L1 -1305 4841 4613 212 197 0 33 chr13 34600689 34600750 -67272419 + A-rich Low_complexity Low_complexity 3 61 0 566 166 106 13 chr13 34600762 34600913 -67272256 - L1MB7 LINE L1 -1540 4606 4442 267 175 48 0 chr13 34600949 34601012 -67272157 - L1MB7 LINE L1 -1696 4450 4385 792 175 32 7 chr13 34601023 34601177 -67271992 - AluJb SINE Alu -19 293 136 1414 190 0 101 chr13 34601184 34601521 -67271648 - AluJb SINE Alu -9 303 1 1452 233 22 3 chr13 34601523 34601888 -67271281 - L1MB7 LINE L1 -1780 4366 3995 * 1919 243 47 44 chr13 34601873 34602082 -67271087 + L1ME1 LINE L1 5386 5593 -573 2211 115 0 3 chr13 34602082 34602377 -67270792 + AluSx SINE Alu 1 294 -18 1919 243 47 44 chr13 34602377 34602897 -67270272 + L1ME1 LINE L1 5593 6117 -49 1774 161 11 3 chr13 34603481 34603766 -67269403 - AluJb SINE Alu -25 287 1 2080 128 6 31 chr13 34604434 34604754 -67268415 + AluSx SINE Alu 1 312 0 950 126 0 7 chr13 34605642 34605777 -67267392 - AluSq/x SINE Alu -179 134 1 997 115 22 28 chr13 34606894 34607065 -67266104 + MER2 DNA MER2_type 30 201 -144 1567 186 16 33 chr13 34607065 34607371 -67265798 - AluJo SINE Alu -11 301 1 462 214 67 57 chr13 34607613 34607715 -67265454 + L1MC5 LINE L1 7705 7805 -156 2118 133 109 14 chr13 34607715 34608083 -67265086 + MER57A LTR ERV1 1 403 0 462 214 67 57 chr13 34608083 34608190 -67264979 + L1MC5 LINE L1 7805 7916 -45 1319 196 13 0 chr13 34608234 34608469 -67264700 - AluJo SINE Alu -74 238 1 273 298 114 26 chr13 34608549 34608663 -67264506 + MIR3 SINE MIR 70 193 -15 195 282 123 58 chr13 34609205 34609684 -67263485 + L2 LINE L2 1697 2206 -1108 779 216 24 61 chr13 34609724 34609937 -67263232 + MER58A DNA MER1_type 19 223 -1 2394 101 0 3 chr13 34610277 34610583 -67262586 - AluSx SINE Alu -7 305 1 253 302 42 69 chr13 34610663 34610852 -67262317 + L2 LINE L2 2996 3179 -93 262 288 164 46 chr13 34610878 34611097 -67262072 + MIR SINE MIR 18 262 0 580 254 0 0 chr13 34611266 34611380 -67261789 - MER81 DNA DNA 0 114 1 230 212 25 136 chr13 34611387 34611505 -67261664 - LTR67 LTR ERVL -20 537 433 1982 118 61 0 chr13 34612158 34612438 -67260731 + AluJb SINE Alu 1 297 -15 461 200 0 67 chr13 34612984 34613089 -67260080 + MER2 DNA MER2_type 1 98 -247 1467 168 121 0 chr13 34613532 34613788 -67259381 + AluJo SINE Alu 1 287 -25 24 0 0 0 chr13 34613793 34613817 -67259352 + AT_rich Low_complexity Low_complexity 1 24 0 285 215 51 38 chr13 34613922 34614001 -67259168 + MER116 DNA Mariner 1 80 0 581 175 0 0 chr13 34614052 34614155 -67259014 + L1M3 LINE L1 5716 5818 -365 352 298 124 0 chr13 34614331 34614452 -67258717 - L2 LINE L2 0 3272 3137 1046 163 0 0 chr13 34617069 34617235 -67255934 - AluSg/x SINE Alu -13 299 134 2534 65 0 0 chr13 34617235 34617541 -67255628 - AluSx SINE Alu -6 306 1 590 220 60 40 chr13 34617569 34617769 -67255400 + MIR SINE MIR 57 260 -2 399 188 14 0 chr13 34617999 34618068 -67255101 + AluJ/FLAM SINE Alu 1 70 -232 1223 145 0 16 chr13 34618115 34618308 -67254861 + AluJb SINE Alu 88 277 -35 189 0 0 0 chr13 34618309 34618330 -67254839 + (T)n Simple_repeat Simple_repeat 1 21 0 1537 206 7 3 chr13 34619776 34620063 -67253106 + AluJo SINE Alu 1 288 -24 252 221 137 0 chr13 34620066 34620161 -67253008 + MIR SINE MIR 124 231 -31 182 171 0 24 chr13 34620297 34620338 -67252831 - L2 LINE L2 -3 3310 3271 39 50 0 0 chr13 34621948 34622008 -67251161 + GC_rich Low_complexity Low_complexity 1 60 0 183 42 0 0 chr13 34622130 34622154 -67251015 + (CGG)n Simple_repeat Simple_repeat 3 26 0 185 108 27 0 chr13 34622160 34622197 -67250972 + G-rich Low_complexity Low_complexity 5 42 0 210 378 0 0 chr13 34622446 34622528 -67250641 + MER5B DNA MER1_type 21 102 -76 2099 211 35 18 chr13 34622593 34623048 -67250121 - LTR40c LTR ERVL -2 463 1 264 351 52 6 chr13 34623595 34623769 -67249400 - L2 LINE L2 -2422 892 711 2042 203 51 26 chr13 34623776 34624269 -67248900 + MLT1D LTR MaLR 1 505 0 226 269 104 0 chr13 34624341 34624408 -67248761 - L2 LINE L2 0 3313 3240 2466 84 0 0 chr13 34624514 34624810 -67248359 + AluSg SINE Alu 1 296 -14 637 235 186 5 chr13 34625075 34625296 -67247873 - MIR SINE MIR 0 262 2 750 154 0 0 chr13 34625369 34625486 -67247683 + FLAM_C SINE Alu 2 118 -25 216 67 0 0 chr13 34625489 34625519 -67247650 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 839 238 66 16 chr13 34625531 34625775 -67247394 - MIR SINE MIR 0 262 7 2250 89 48 0 chr13 34627794 34628087 -67245082 - AluSc SINE Alu -2 307 1 242 29 29 0 chr13 34628149 34628184 -67244985 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 236 325 0 0 chr13 34628674 34628757 -67244412 + L2 LINE L2 2977 3059 -213 2074 124 10 7 chr13 34629472 34629763 -67243406 - AluSx SINE Alu -20 292 1 253 242 74 21 chr13 34631779 34631874 -67241295 - L1MEd LINE L1 -3316 2813 2714 1179 150 45 20 chr13 34631876 34632076 -67241093 + MER3 DNA MER1_type 1 205 -4 425 237 86 20 chr13 34632087 34632239 -67240930 - L1MEd LINE L1 -4973 1146 985 1131 192 25 1 chr13 34632380 34632651 -67240518 + L1MC/D LINE L1 5198 5473 -743 3340 214 72 37 chr13 34632756 34633101 -67240068 + L1MD2 LINE L1 5392 5723 -636 2377 93 0 3 chr13 34633101 34633403 -67239766 + AluSg SINE Alu 1 301 -9 3340 214 72 37 chr13 34633403 34633974 -67239195 + L1MD2 LINE L1 5723 6340 -19 247 250 17 0 chr13 34633975 34634035 -67239134 + (TA)n Simple_repeat Simple_repeat 2 62 0 283 184 220 55 chr13 34634174 34634283 -67238886 - L1MEd LINE L1 -5981 138 12 1918 124 9 22 chr13 34634563 34634912 -67238257 - MER4A LTR ERV1 0 664 262 662 102 10 10 chr13 34634912 34635010 -67238159 - MER4A LTR ERV1 -566 98 1 400 212 195 0 chr13 34635010 34635127 -67238042 - MLT1I LTR MaLR -37 372 233 245 254 0 0 chr13 34635298 34635357 -67237812 + GA-rich Low_complexity Low_complexity 4 62 0 1977 163 70 0 chr13 34635730 34636085 -67237084 - LTR26E LTR ERV1 -48 574 195 567 240 8 8 chr13 34636092 34636213 -67236956 - LTR28 LTR ERV1 0 1020 900 1820 190 85 124 chr13 34636292 34637067 -67236102 - LTR1B LTR ERV1 -81 745 1 1072 116 35 86 chr13 34637068 34637177 -67235992 - LTR26E LTR ERV1 -434 188 75 2022 148 0 13 chr13 34637177 34637480 -67235689 - AluSx SINE Alu -10 302 4 2141 103 3 13 chr13 34637489 34637791 -67235378 - AluSx SINE Alu -13 299 1 1072 116 35 86 chr13 34637791 34637869 -67235300 - LTR26E LTR ERV1 -555 67 1 1749 193 0 7 chr13 34638432 34638737 -67234432 + AluJo SINE Alu 1 303 -9 538 283 85 5 chr13 34638867 34639079 -67234090 - MIR SINE MIR 0 262 34 360 202 36 0 chr13 34639065 34639149 -67234020 - MIR SINE MIR -59 203 117 * 439 245 0 0 chr13 34639139 34639237 -67233932 + MER5A DNA MER1_type 12 109 -80 356 255 38 0 chr13 34639270 34639376 -67233793 - MER5A DNA MER1_type 0 189 80 569 193 76 0 chr13 34639546 34639665 -67233504 - MER58B DNA MER1_type -39 302 175 418 203 50 66 chr13 34639674 34639856 -67233313 - LTR37B LTR ERV1 -74 394 216 4925 112 18 42 chr13 34639856 34640289 -67232880 - L1MC1 LINE L1 0 6333 5928 2066 151 65 45 chr13 34640289 34640635 -67232534 + LTR47A LTR ERVL 1 359 -93 207 0 0 0 chr13 34640635 34640658 -67232511 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2066 151 65 45 chr13 34640658 34640754 -67232415 + LTR47A LTR ERVL 359 452 0 4925 112 18 42 chr13 34640754 34641145 -67232024 - L1MC1 LINE L1 -405 5928 5529 3483 103 33 48 chr13 34641145 34641767 -67231402 + MER4B LTR ERV1 1 779 0 619 190 10 2 chr13 34641767 34641915 -67231254 - L1MC1 LINE L1 -801 5532 5384 2064 136 10 10 chr13 34642089 34642384 -67230785 + AluSg SINE Alu 1 295 -15 2211 177 100 93 chr13 34643001 34643723 -67229446 + LTR8A LTR ERV1 1 727 0 350 184 0 11 chr13 34644168 34644255 -67228914 + C-rich Low_complexity Low_complexity 3 88 0 679 178 16 0 chr13 34644269 34644398 -67228771 - FLAM_C SINE Alu -1 132 2 1993 97 0 0 chr13 34645717 34645974 -67227195 + AluSc SINE Alu 49 305 -4 3205 125 39 34 chr13 34646526 34646593 -67226576 + L1MA8 LINE L1 5717 5782 -509 228 67 0 0 chr13 34646593 34646623 -67226546 + (CATA)n Simple_repeat Simple_repeat 2 31 0 3205 125 39 34 chr13 34646623 34646896 -67226273 + L1MA8 LINE L1 5782 6064 -227 1642 176 48 7 chr13 34646896 34647186 -67225983 + AluJb SINE Alu 1 302 -10 3205 125 39 34 chr13 34647186 34647410 -67225759 + L1MA8 LINE L1 6064 6285 -6 2086 152 3 0 chr13 34647740 34648042 -67225127 - AluJb SINE Alu -9 303 1 240 275 38 12 chr13 34648118 34648198 -67224971 - MIR3 SINE MIR -28 180 99 1815 136 0 11 chr13 34648276 34648549 -67224620 - AluJo SINE Alu -5 307 38 1923 100 7 54 chr13 34648760 34649039 -67224130 - AluSx SINE Alu -26 286 21 776 195 12 30 chr13 34649199 34649368 -67223801 - FRAM SINE Alu 0 166 1 2060 129 0 3 chr13 34650039 34650334 -67222835 + AluJb SINE Alu 6 299 -13 360 188 35 0 chr13 34650904 34650989 -67222180 + MER53 DNA DNA 1 88 -101 1312 197 4 20 chr13 34651010 34651264 -67221905 - AluJo SINE Alu -62 250 1 241 120 220 70 chr13 34651267 34651367 -67221802 - MER53 DNA DNA -74 115 1 775 179 92 0 chr13 34651602 34651775 -67221394 + MER5A DNA MER1_type 1 189 0 2067 143 3 7 chr13 34651970 34652271 -67220898 + AluJb SINE Alu 6 305 -7 1053 205 11 0 chr13 34652362 34652547 -67220622 + Tigger7 DNA MER2_type 2 188 -517 870 161 0 0 chr13 34652547 34652696 -67220473 + MER5A DNA MER1_type 41 189 0 1647 171 16 40 chr13 34653045 34653349 -67219820 + AluJb SINE Alu 1 297 -15 215 176 0 78 chr13 34653760 34653811 -67219358 + L2 LINE L2 3225 3271 -1 516 261 78 32 chr13 34654109 34654327 -67218842 + MER112 DNA MER1_type 8 235 -25 2029 157 0 0 chr13 34654532 34654832 -67218337 + AluJo SINE Alu 1 300 -12 265 315 45 0 chr13 34655793 34655882 -67217287 + MER91C DNA MER1_type 9 101 -39 27 0 0 0 chr13 34659205 34659232 -67213937 + GC_rich Low_complexity Low_complexity 1 27 0 252 226 85 19 chr13 34659533 34659639 -67213530 + MIR SINE MIR 27 139 -123 1974 121 19 7 chr13 34659699 34660006 -67213163 - AluJb SINE Alu 0 312 2 907 266 275 14 chr13 34660456 34661530 -67211639 + L2 LINE L2 309 1662 -1652 257 164 16 16 chr13 34661530 34661591 -67211578 + L2 LINE L2 1770 1830 -1484 636 217 63 68 chr13 34662207 34662414 -67210755 + L2 LINE L2 3108 3313 0 208 274 94 47 chr13 34662405 34662511 -67210658 + L2 LINE L2 3193 3303 -10 * 652 233 138 24 chr13 34662978 34663188 -67209981 - MIR SINE MIR -21 241 8 2818 3 0 0 chr13 34663358 34663660 -67209509 + AluYa5 SINE Alu 1 302 -9 748 130 0 8 chr13 34663755 34663878 -67209291 - FLAM_C SINE Alu -21 122 1 1461 177 100 3 chr13 34665039 34665339 -67207830 - L1MB5 LINE L1 -7 6167 5839 208 267 0 0 chr13 34665605 34665650 -67207519 + L2 LINE L2 3251 3295 -18 305 311 75 9 chr13 34665726 34665887 -67207282 + MIR SINE MIR 1 172 -36 2425 93 0 0 chr13 34666361 34666662 -67206507 - AluSg SINE Alu -9 301 1 28 29 0 0 chr13 34667987 34668022 -67205147 + AT_rich Low_complexity Low_complexity 1 35 0 1631 140 4 4 chr13 34668022 34668258 -67204911 - AluSq SINE Alu -77 236 1 276 135 0 0 chr13 34669193 34669245 -67203924 - L1MB4 LINE L1 0 6180 6129 217 300 30 10 chr13 34671031 34671131 -67202038 + (TA)n Simple_repeat Simple_repeat 1 102 0 863 78 70 0 chr13 34672866 34672994 -67200175 + MER85 DNA T2_type 1 137 -2 351 296 0 10 chr13 34673097 34673195 -67199974 + MIR SINE MIR 149 245 -17 245 313 12 38 chr13 34673234 34673314 -67199855 - MIR SINE MIR -60 148 71 1227 137 66 22 chr13 34673675 34673901 -67199268 - MER46A DNA MER2_type 0 236 1 863 248 202 35 chr13 34675253 34675868 -67197301 + L2 LINE L2 2611 3313 0 949 217 136 31 chr13 34676355 34676613 -67196556 - AluJo SINE Alu -16 286 2 194 224 0 41 chr13 34679624 34679673 -67193496 - L2 LINE L2 -76 3196 3150 2312 77 10 3 chr13 34679709 34680006 -67193163 + AluSc SINE Alu 1 299 -10 1682 180 0 3 chr13 34680013 34680308 -67192861 + AluJb SINE Alu 1 294 -18 856 144 0 0 chr13 34680560 34680685 -67192484 - FLAM_C SINE Alu -18 125 1 27 0 0 0 chr13 34682815 34682842 -67190327 + AT_rich Low_complexity Low_complexity 1 27 0 1883 133 0 61 chr13 34683226 34683556 -67189613 - AluJb SINE Alu -2 310 1 25 65 0 0 chr13 34683620 34683666 -67189503 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr13 34683825 34683855 -67189314 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr13 34684429 34684475 -67188694 + AT_rich Low_complexity Low_complexity 1 46 0 1875 137 21 7 chr13 34685071 34685356 -67187813 - AluSx SINE Alu -23 289 1 2122 129 3 7 chr13 34685388 34685697 -67187472 - AluSx SINE Alu -4 308 1 1743 160 17 7 chr13 34685773 34686061 -67187108 + AluJb SINE Alu 1 291 -21 1786 176 0 7 chr13 34686738 34687028 -67186141 + AluJb SINE Alu 1 288 -24 465 296 21 14 chr13 34687265 34687407 -67185762 + MIR SINE MIR 6 148 -114 759 208 101 0 chr13 34688799 34688958 -67184211 - FAM SINE Alu 0 175 1 2318 87 0 0 chr13 34689149 34689438 -67183731 + AluY SINE Alu 1 289 -22 2014 92 3 73 chr13 34689854 34690170 -67182999 + AluSg SINE Alu 1 294 -16 340 200 306 12 chr13 34692361 34692450 -67180719 - L1ME4a LINE L1 -226 5895 5833 2321 104 0 0 chr13 34692450 34692749 -67180420 - AluSx SINE Alu -13 299 1 340 200 306 12 chr13 34692749 34692819 -67180350 - L1ME4a LINE L1 -288 5833 5689 727 197 7 20 chr13 34693707 34693854 -67179315 + MLT1F1 LTR MaLR 5 149 -418 * 1239 188 188 0 chr13 34693852 34694113 -67179056 + MLT1F1 LTR MaLR 253 562 -5 222 269 58 29 chr13 34694200 34694304 -67178865 + L2 LINE L2 2342 2448 -866 1827 134 98 128 chr13 34694305 34694806 -67178363 + LTR21A LTR ERV1 1 486 -19 778 274 225 18 chr13 34694810 34695452 -67177717 + L2 LINE L2 2454 3311 -2 183 318 0 0 chr13 34695876 34695920 -67177249 - L2 LINE L2 -15 3298 3255 21 0 0 0 chr13 34696985 34697006 -67176163 + AT_rich Low_complexity Low_complexity 1 21 0 1668 152 10 35 chr13 34697046 34697359 -67175810 + AluJo SINE Alu 1 306 0 597 233 42 62 chr13 34697829 34698022 -67175147 - MER5A DNA MER1_type 0 189 1 839 196 0 20 chr13 34698254 34698402 -67174767 - FRAM SINE Alu -30 146 2 1029 169 0 0 chr13 34698426 34698586 -67174583 - AluSg/x SINE Alu -16 294 135 3562 195 69 49 chr13 34699128 34700093 -67173076 + L1MC4 LINE L1 6496 7480 -562 1643 173 29 0 chr13 34700308 34700615 -67172554 + AluJb SINE Alu 1 315 0 2287 126 118 65 chr13 34701308 34701816 -67171353 - L1MB7 LINE L1 -19 6165 5631 1977 150 10 0 chr13 34702237 34702530 -67170639 + AluJo SINE Alu 1 296 -16 2313 63 0 0 chr13 34702703 34702989 -67170180 - L1PA7 LINE L1 -13 6141 5856 5578 80 22 1 chr13 34702989 34703750 -67169419 + L1P LINE L1 3497 4273 -1873 450 310 129 25 chr13 34705604 34706085 -67167084 - L1M4 LINE L1 -1857 4289 3759 1032 119 40 0 chr13 34706198 34706347 -67166822 - MER30 DNA MER1_type 0 230 76 531 95 0 0 chr13 34706347 34706421 -67166748 + MADE1 DNA Mariner 2 75 -5 280 56 0 0 chr13 34706433 34706469 -67166700 - MER30 DNA MER1_type -194 36 1 1745 205 85 17 chr13 34706498 34706971 -67166198 + MLT1D LTR MaLR 1 505 0 453 236 143 33 chr13 34707814 34707996 -67165173 - L3b LINE CR1 -152 1431 1230 29 0 0 0 chr13 34708162 34708191 -67164978 + AT_rich Low_complexity Low_complexity 1 29 0 375 286 87 36 chr13 34708560 34708756 -67164413 - MIR SINE MIR -50 212 7 382 143 0 16 chr13 34708824 34708887 -67164282 + MER97a DNA MER1_type? 118 179 -715 299 224 103 19 chr13 34709012 34709119 -67164050 - MIR SINE MIR -3 259 144 664 300 58 19 chr13 34709704 34710096 -67163073 + MER20B DNA MER1_type 12 456 -327 390 286 143 24 chr13 34710896 34711106 -67162063 + MER112 DNA MER1_type 15 249 -11 29 0 0 0 chr13 34711404 34711433 -67161736 + AT_rich Low_complexity Low_complexity 1 29 0 1838 158 24 3 chr13 34711614 34711905 -67161264 - AluJo SINE Alu -15 297 1 31 68 0 0 chr13 34711926 34711985 -67161184 + AT_rich Low_complexity Low_complexity 1 59 0 14204 173 31 18 chr13 34712525 34714464 -67158705 + L1M1 LINE L1 83 2069 -4780 1875 109 18 7 chr13 34714464 34714738 -67158431 + AluSq SINE Alu 36 312 -1 14204 173 31 18 chr13 34714738 34715560 -67157609 + L1M1 LINE L1 2069 2879 -3970 36432 76 9 10 chr13 34715560 34720798 -67152371 + L1PA6 LINE L1 1 5235 -911 40657 33 22 2 chr13 34720799 34726821 -67146348 + L1PA2 LINE L1 13 6152 -3 6784 63 8 5 chr13 34726832 34727759 -67145410 + L1PA6 LINE L1 5225 6154 0 13492 167 41 14 chr13 34727774 34728370 -67144799 + L1M1 LINE L1 2865 3443 -3562 2265 93 3 3 chr13 34728370 34728670 -67144499 - AluSc SINE Alu -9 300 1 13492 167 41 14 chr13 34728670 34729097 -67144072 + L1M1 LINE L1 3443 3857 -3148 794 183 0 0 chr13 34729097 34729228 -67143941 + FLAM_A SINE Alu 1 131 -2 13492 167 41 14 chr13 34729228 34731757 -67141412 + L1M1 LINE L1 3857 6511 -494 2273 108 0 0 chr13 34732583 34732880 -67140289 - AluSx SINE Alu -15 297 1 444 269 110 59 chr13 34733896 34734497 -67138672 + L1MC4a LINE L1 5303 5786 -335 483 18 0 0 chr13 34735300 34735356 -67137813 + (TAG)n Simple_repeat Simple_repeat 1 56 0 791 139 0 0 chr13 34735357 34735472 -67137697 - FLAM_C SINE Alu -18 115 1 197 309 96 11 chr13 34735554 34735648 -67137521 + MIR3 SINE MIR 64 165 -43 767 155 65 0 chr13 34735675 34735843 -67137326 - L1MD3 LINE L1 0 7995 7817 34 65 0 0 chr13 34735904 34735966 -67137203 + AT_rich Low_complexity Low_complexity 1 62 0 743 158 0 24 chr13 34735966 34736093 -67137076 - FLAM_C SINE Alu -9 124 1 2081 133 0 27 chr13 34736167 34736468 -67136701 + AluSx SINE Alu 1 293 -19 295 271 86 57 chr13 34737271 34737411 -67135758 - MIR SINE MIR -71 191 48 271 287 75 0 chr13 34738132 34738226 -67134943 - MIR SINE MIR -105 157 57 501 291 90 85 chr13 34738307 34738685 -67134484 + L2 LINE L2 2888 3267 -5 1560 197 17 14 chr13 34738986 34739280 -67133889 - AluJo SINE Alu -17 295 1 369 281 187 29 chr13 34739409 34739580 -67133589 + MIR SINE MIR 28 225 -37 247 250 65 21 chr13 34740142 34740324 -67132845 + L2 LINE L2 3032 3311 -2 21 57 0 0 chr13 34740589 34740624 -67132545 + AT_rich Low_complexity Low_complexity 1 35 0 1950 147 0 0 chr13 34741703 34741995 -67131174 + AluSx SINE Alu 14 305 -7 440 155 21 6 chr13 34742208 34742447 -67130722 + AluJo SINE Alu 1 293 -19 21 36 0 0 chr13 34743091 34743119 -67130050 + AT_rich Low_complexity Low_complexity 1 28 0 2790 150 87 93 chr13 34743788 34744180 -67128989 + L1MB7 LINE L1 4947 5340 -844 2437 70 0 26 chr13 34744180 34744493 -67128676 + AluSg SINE Alu 1 305 -5 2790 150 87 93 chr13 34744493 34745272 -67127897 + L1MB7 LINE L1 5340 6122 -62 240 190 139 0 chr13 34745273 34745352 -67127817 + L1MB8 LINE L1 6077 6166 -12 429 255 189 36 chr13 34745458 34745654 -67127515 + MIR SINE MIR 3 228 -34 22 35 0 0 chr13 34746016 34746045 -67127124 + AT_rich Low_complexity Low_complexity 1 29 0 478 192 20 10 chr13 34746104 34746203 -67126966 + MER5A DNA MER1_type 4 103 -86 981 313 163 25 chr13 34746311 34746706 -67126463 - L2 LINE L2 -2 3270 2931 733 224 0 114 chr13 34746706 34746951 -67126218 + MER20 DNA MER1_type 2 218 -1 981 313 163 25 chr13 34746951 34747461 -67125708 - L2 LINE L2 -341 2931 2240 256 282 51 0 chr13 34747599 34747677 -67125492 + U4 snRNA snRNA 1 82 -63 2186 115 10 0 chr13 34748274 34748569 -67124600 + AluSx SINE Alu 6 303 -9 252 364 20 33 chr13 34749639 34749790 -67123379 - LTR67 LTR ERVL -315 242 94 677 300 32 62 chr13 34750277 34750757 -67122412 - L2 LINE L2 -136 3177 2714 589 245 51 51 chr13 34750762 34750958 -67122211 + MER20 DNA MER1_type 24 219 0 2415 237 228 52 chr13 34750965 34751155 -67122014 - L2 LINE L2 -603 2711 2556 2329 104 0 0 chr13 34751155 34751452 -67121717 + AluSg SINE Alu 1 297 -13 2415 237 228 52 chr13 34751452 34752365 -67120804 - L2 LINE L2 -758 2556 1413 853 247 43 0 chr13 34752529 34752715 -67120454 - MIR SINE MIR -59 203 10 965 181 10 10 chr13 34752861 34753060 -67120109 + L1MB3 LINE L1 5985 6183 0 371 282 97 32 chr13 34753550 34753674 -67119495 + L2 LINE L2 3180 3311 -2 29805 99 12 21 chr13 34754837 34761153 -67112016 - L1PA7 LINE L1 0 6469 128 1793 164 59 0 chr13 34761473 34761796 -67111373 + MER2 DNA MER2_type 1 342 -2 326 292 0 0 chr13 34762188 34762260 -67110909 - L2 LINE L2 -13 3259 3188 877 275 191 14 chr13 34762264 34762534 -67110635 + L2 LINE L2 2805 3026 -287 2228 87 31 0 chr13 34762534 34762821 -67110348 - AluSx SINE Alu -15 297 2 877 275 191 14 chr13 34762821 34762975 -67110194 + L2 LINE L2 3026 3304 -9 215 343 15 0 chr13 34763241 34763308 -67109861 + L2 LINE L2 3186 3253 -19 223 330 204 23 chr13 34763349 34763613 -67109556 - L2 LINE L2 -1230 2084 1773 281 308 41 82 chr13 34763636 34763782 -67109387 - MIR3 SINE MIR -63 145 6 233 261 130 72 chr13 34764928 34765066 -67108103 - MER5A DNA MER1_type -37 152 7 487 292 3 43 chr13 34766054 34766312 -67106857 + GA-rich Low_complexity Low_complexity 1 247 0 22 0 0 0 chr13 34766468 34766490 -67106679 + AT_rich Low_complexity Low_complexity 1 22 0 585 218 223 32 chr13 34766501 34766689 -67106480 - MIR SINE MIR -25 237 14 2415 87 0 0 chr13 34767591 34767891 -67105278 - AluSx SINE Alu -12 300 1 22 35 0 0 chr13 34769600 34769629 -67103540 + AT_rich Low_complexity Low_complexity 1 29 0 205 280 182 7 chr13 34769960 34770103 -67103066 + MIR SINE MIR 94 261 -1 371 253 272 0 chr13 34770130 34770292 -67102877 - MIR SINE MIR 0 262 57 304 327 201 38 chr13 34770594 34771382 -67101787 + L2 LINE L2 102 1017 -2297 232 248 99 10 chr13 34772397 34772498 -67100671 - L1ME LINE L1 -296 5874 5765 180 0 0 0 chr13 34772541 34772561 -67100608 + (T)n Simple_repeat Simple_repeat 1 20 0 1182 252 102 62 chr13 34772564 34772724 -67100445 - L2 LINE L2 -1 3312 3160 1595 202 14 7 chr13 34772724 34773021 -67100148 + AluJb SINE Alu 1 299 -13 1182 252 102 62 chr13 34773021 34773457 -67099712 - L2 LINE L2 -153 3160 2687 799 196 54 34 chr13 34773458 34773662 -67099507 + L1ME LINE L1 5527 5734 -436 957 218 30 26 chr13 34773663 34773897 -67099272 - L2 LINE L2 -928 2386 2152 637 247 116 26 chr13 34773931 34774201 -67098968 - L1ME LINE L1 -455 5715 5414 596 280 85 30 chr13 34774216 34774616 -67098553 - L1ME LINE L1 -820 5326 4905 2162 69 7 31 chr13 34774769 34775090 -67098079 - AluY SINE Alu 0 314 1 776 311 227 27 chr13 34775105 34775923 -67097246 + L2 LINE L2 1836 2817 -497 973 238 82 0 chr13 34776085 34776316 -67096853 + MIR SINE MIR 2 251 -11 595 143 0 0 chr13 34777213 34777304 -67095865 + FLAM_C SINE Alu 17 107 -36 198 0 0 0 chr13 34777518 34777540 -67095629 + (A)n Simple_repeat Simple_repeat 1 22 0 254 268 14 0 chr13 34778970 34779041 -67094128 + MER94 DNA DNA 1 72 -62 575 193 179 47 chr13 34779385 34779659 -67093510 + MER114 LTR ERV 1 310 -338 319 300 97 74 chr13 34782181 34782615 -67090554 + L2 LINE L2 2726 3171 -101 21 0 0 0 chr13 34782799 34782820 -67090349 + AT_rich Low_complexity Low_complexity 1 21 0 718 92 0 0 chr13 34783845 34783943 -67089226 - HY3 scRNA scRNA -2 99 2 29 28 0 0 chr13 34784175 34784211 -67088958 + AT_rich Low_complexity Low_complexity 1 36 0 306 305 34 42 chr13 34784674 34784792 -67088377 + L2 LINE L2 3182 3298 -15 835 276 60 4 chr13 34785697 34785929 -67087240 + MIR SINE MIR 17 261 -1 200 200 60 0 chr13 34786203 34786253 -67086916 - MER5B DNA MER1_type -99 79 27 1428 88 49 0 chr13 34786728 34786932 -67086237 + MLT2A1 LTR ERVL 1 214 -230 7871 60 14 0 chr13 34786932 34787907 -67085262 + HERVL LTR ERVL 2891 3879 -1775 289 143 0 0 chr13 34787907 34787956 -67085213 - L1M4c LINE L1 -5426 958 910 2865 157 44 32 chr13 34787983 34788338 -67084831 - L1M4c LINE L1 -5455 929 563 1674 144 50 22 chr13 34788338 34788615 -67084554 - AluJo SINE Alu -27 285 1 2865 157 44 32 chr13 34788615 34788844 -67084325 - L1M4c LINE L1 -5821 563 338 2148 107 27 3 chr13 34788894 34789194 -67083975 - AluSg SINE Alu -3 307 1 403 258 70 103 chr13 34789194 34789454 -67083715 + MLT1J LTR MaLR 194 446 -65 1751 219 93 32 chr13 34789454 34790042 -67083127 - MLT1E3 LTR MaLR 0 624 1 1788 137 29 7 chr13 34790117 34790423 -67082746 - L1MB3 LINE L1 0 6183 5871 833 140 0 29 chr13 34790470 34790606 -67082563 + FLAM_C SINE Alu 2 133 0 558 196 8 145 chr13 34790608 34790843 -67082326 - L2 LINE L2 -1230 2084 1882 260 128 21 21 chr13 34791097 34791144 -67082025 - L2 LINE L2 0 3313 3267 22 35 0 0 chr13 34792099 34792128 -67081041 + AT_rich Low_complexity Low_complexity 1 29 0 412 274 65 91 chr13 34793008 34793153 -67080016 - L3 LINE CR1 -1 1576 1440 2215 121 3 0 chr13 34793153 34793458 -67079711 + AluSx SINE Alu 1 306 -6 412 274 65 91 chr13 34793458 34793575 -67079594 - L3 LINE CR1 -137 1440 1321 205 359 185 0 chr13 34795417 34795612 -67077557 - L3 LINE CR1 -2 1575 1345 526 115 0 23 chr13 34795612 34795699 -67077470 + AluSc SINE Alu 1 85 -224 356 301 165 37 chr13 34795709 34795981 -67077188 - L3 LINE CR1 -355 1222 916 398 318 64 88 chr13 34796875 34796936 -67076233 - L3 LINE CR1 -728 849 788 2213 108 0 3 chr13 34796936 34797232 -67075937 - AluSx SINE Alu -17 295 1 398 318 64 88 chr13 34797232 34797466 -67075703 - L3 LINE CR1 -789 788 561 190 268 24 0 chr13 34797865 34797906 -67075263 - MIR SINE MIR -176 86 45 226 309 15 29 chr13 34798302 34798370 -67074799 - L2 LINE L2 -5 3267 3201 1517 183 76 0 chr13 34799238 34799500 -67073669 + AluJo SINE Alu 1 282 -30 227 238 24 36 chr13 34799611 34799695 -67073474 - L1MEd LINE L1 -6001 118 36 413 335 71 71 chr13 34799723 34800105 -67073064 + L2 LINE L2 2872 3253 -19 1485 103 0 0 chr13 34801540 34801754 -67071415 - L1PA8 LINE L1 -14 6158 5945 296 208 113 66 chr13 34801919 34802025 -67071144 - MER94 DNA DNA -20 114 4 1733 171 18 0 chr13 34802053 34802333 -67070836 - AluJo SINE Alu -21 291 7 22 80 0 0 chr13 34802473 34802523 -67070646 + AT_rich Low_complexity Low_complexity 1 50 0 640 220 39 114 chr13 34802646 34802790 -67070379 - MIR SINE MIR -7 255 137 2322 99 0 0 chr13 34802790 34803083 -67070086 + AluSx SINE Alu 1 293 -19 640 220 39 114 chr13 34803083 34803193 -67069976 - MIR SINE MIR -125 137 20 808 268 30 5 chr13 34803223 34803421 -67069748 + MER20 DNA MER1_type 4 206 -13 207 0 0 0 chr13 34803508 34803531 -67069638 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 266 309 48 0 chr13 34804503 34804629 -67068540 - L1ME4a LINE L1 -11 6110 5979 238 259 37 46 chr13 34804739 34804847 -67068322 - L1ME4a LINE L1 -2007 5801 5695 1125 285 99 62 chr13 34805124 34806310 -67066859 - L1MEd LINE L1 -1009 1481 143 237 267 35 0 chr13 34806327 34806413 -67066756 - L1MEd LINE L1 -6027 92 4 894 133 0 21 chr13 34806714 34806857 -67066312 + MLT1B LTR MaLR 4 143 -247 1544 186 29 26 chr13 34806857 34807294 -67065875 - LTR2B LTR ERV1 0 490 1 1173 189 15 64 chr13 34807294 34807553 -67065616 + MLT1B LTR MaLR 140 385 -5 345 301 58 0 chr13 34807791 34807894 -67065275 + L1MC4a LINE L1 6758 6866 -942 4354 169 42 36 chr13 34807897 34808246 -67064923 + L1MB5 LINE L1 4874 5219 -955 2135 126 0 7 chr13 34808246 34808556 -67064613 - AluSx SINE Alu -4 308 1 4354 169 42 36 chr13 34808556 34809162 -67064007 + L1MB5 LINE L1 5219 5828 -346 2389 91 3 0 chr13 34809162 34809469 -67063700 + AluSx SINE Alu 1 308 -4 4354 169 42 36 chr13 34809469 34809811 -67063358 + L1MB5 LINE L1 5828 6166 -8 904 188 0 0 chr13 34809918 34810062 -67063107 - FRAM SINE Alu -21 155 12 3395 111 2 18 chr13 34810182 34810694 -67062475 - L1PA13 LINE L1 -101 6062 5559 28 0 0 0 chr13 34810754 34810782 -67062387 + AT_rich Low_complexity Low_complexity 1 28 0 1410 156 12 97 chr13 34810782 34811102 -67062067 - AluJb SINE Alu -9 293 1 255 191 16 63 chr13 34811314 34811377 -67061792 + Charlie4 DNA MER1_type 1 60 -1901 845 86 86 0 chr13 34811504 34811632 -67061537 + MER85 DNA T2_type 1 139 0 21 36 0 0 chr13 34811969 34811997 -67061172 + AT_rich Low_complexity Low_complexity 1 28 0 1124 71 13 0 chr13 34812306 34812460 -67060709 + L1PA7 LINE L1 5999 6154 0 464 297 87 35 chr13 34812479 34812708 -67060461 + MIR SINE MIR 20 260 -2 266 271 73 10 chr13 34812818 34812914 -67060255 + MARNA DNA Mariner 157 258 -328 405 289 60 27 chr13 34813564 34813713 -67059456 - L2 LINE L2 -8 3305 3152 257 247 136 25 chr13 34813845 34813926 -67059243 + MLT1H1 LTR MaLR 179 268 -287 402 150 218 0 chr13 34814116 34814263 -67058906 - Charlie5 DNA MER1_type -62 2550 2372 5782 137 29 29 chr13 34814279 34814698 -67058471 - L1MA4 LINE L1 -35 6265 5847 1796 171 3 7 chr13 34814698 34815007 -67058162 - AluJo SINE Alu 0 312 5 5782 137 29 29 chr13 34815007 34815657 -67057512 - L1MA4 LINE L1 -453 5847 5194 855 154 8 0 chr13 34815657 34815787 -67057382 - FLAM_C SINE Alu -1 132 2 5782 137 29 29 chr13 34815787 34816138 -67057031 - L1MA4 LINE L1 -1106 5194 4844 540 188 62 0 chr13 34816203 34816315 -67056854 - L1MA4 LINE L1 -1286 4860 4742 * 696 168 34 0 chr13 34816305 34816454 -67056715 - L1MA4 LINE L1 -1677 4469 4316 24 0 0 0 chr13 34816454 34816478 -67056691 + AT_rich Low_complexity Low_complexity 1 24 0 894 122 0 0 chr13 34816480 34816595 -67056574 - FLAM_C SINE Alu -28 115 1 1251 120 0 0 chr13 34816595 34816795 -67056374 - L1MA4 LINE L1 -1815 4331 4132 673 154 48 0 chr13 34816798 34816922 -67056247 - MER33 DNA MER1_type -259 65 1 1469 127 94 22 chr13 34817218 34817485 -67055684 + MER46B DNA MER2_type 1 161 -75 211 93 47 0 chr13 34817490 34817533 -67055636 + (TA)n Simple_repeat Simple_repeat 2 46 0 320 225 56 11 chr13 34817533 34817622 -67055547 + L1MC4 LINE L1 6612 6704 -1338 212 143 24 0 chr13 34817622 34817664 -67055505 + (TA)n Simple_repeat Simple_repeat 1 43 0 399 191 12 0 chr13 34817673 34817757 -67055412 + MER46B DNA MER2_type 147 231 -5 1131 135 22 44 chr13 34817901 34818130 -67055039 - L1PB1 LINE L1 -2 6149 5926 590 244 58 13 chr13 34818749 34818905 -67054264 + MIR SINE MIR 82 244 -18 183 279 23 0 chr13 34819005 34819048 -67054121 + L2 LINE L2 3217 3260 -12 24 0 0 0 chr13 34820004 34820028 -67053141 + AT_rich Low_complexity Low_complexity 1 24 0 17831 31 3 3 chr13 34821066 34823989 -67049180 + L1PA3 LINE L1 3201 6121 -34 369 263 12 23 chr13 34823989 34824160 -67049009 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 602 14 0 0 chr13 34824160 34824231 -67048938 + L1PA3 LINE L1 6077 6147 -8 1589 195 11 7 chr13 34824300 34824582 -67048587 - AluJb SINE Alu -29 283 1 1286 151 15 5 chr13 34824741 34824947 -67048222 - AluJb SINE Alu -104 208 1 3588 108 17 17 chr13 34824947 34825539 -67047630 - MER4B LTR ERV1 -21 758 1 1255 160 14 5 chr13 34825539 34825752 -67047417 + AluJo SINE Alu 90 304 -8 340 319 98 39 chr13 34825753 34826007 -67047162 + L1ME3A LINE L1 1528 1796 -4588 284 79 0 0 chr13 34826298 34826336 -67046833 - MER4E LTR ERV1 -99 667 630 4095 166 53 25 chr13 34826623 34827483 -67045686 + MER4D LTR ERV1 1 593 -17 1006 186 26 0 chr13 34827487 34827680 -67045489 + L1PBa LINE L1 3 200 -6663 6336 118 22 6 chr13 34827680 34829196 -67043973 + L1PBa LINE L1 634 2315 -4548 617 263 73 105 chr13 34829342 34829772 -67043397 + L1ME3A LINE L1 4618 5019 -1363 2065 74 8 0 chr13 34829772 34830028 -67043141 + AluY SINE Alu 35 292 -19 617 263 73 105 chr13 34830028 34830281 -67042888 + L1ME3A LINE L1 5019 5279 -1103 1060 201 0 6 chr13 34830346 34830525 -67042644 - AluJb SINE Alu -22 290 113 329 201 24 110 chr13 34830551 34830617 -67042552 + L1ME3A LINE L1 5359 5429 -953 2282 98 0 3 chr13 34830617 34830914 -67042255 + AluSx SINE Alu 2 297 -15 329 201 24 110 chr13 34830914 34831011 -67042158 + L1ME3A LINE L1 5429 5508 -874 445 273 54 41 chr13 34831051 34831293 -67041876 + L1ME3A LINE L1 5942 6186 -220 343 256 62 67 chr13 34831359 34831554 -67041615 + L1ME3A LINE L1 6198 6391 -15 2376 236 30 20 chr13 34831594 34832200 -67040969 + MER74B LTR ERVL 1 612 -10 21 0 0 0 chr13 34832214 34832235 -67040934 + AT_rich Low_complexity Low_complexity 1 21 0 3751 147 86 15 chr13 34832577 34833312 -67039857 + L1MC2 LINE L1 5545 6331 -13 1825 154 0 26 chr13 34834430 34834735 -67038434 + AluSg SINE Alu 1 297 -13 410 47 16 109 chr13 34835065 34835193 -67037976 + (TTTCC)n Simple_repeat Simple_repeat 3 118 0 1938 154 10 0 chr13 34835197 34835495 -67037674 - AluSx SINE Alu -11 301 1 12467 180 28 22 chr13 34836899 34839752 -67033417 - L1PB1 LINE L1 0 6151 3273 2168 125 0 0 chr13 34839752 34840057 -67033112 - AluSx SINE Alu 0 312 8 12467 180 28 22 chr13 34840057 34840881 -67032288 - L1PB1 LINE L1 -2878 3273 2456 1565 181 31 21 chr13 34841027 34841315 -67031854 - AluJb SINE Alu -21 291 1 584 290 94 45 chr13 34841676 34841967 -67031202 + L2 LINE L2 2966 3276 -37 2286 109 0 6 chr13 34841967 34842280 -67030889 - AluSq SINE Alu -2 311 1 584 290 94 45 chr13 34842280 34842319 -67030850 + L2 LINE L2 3276 3312 -1 392 287 19 9 chr13 34842356 34842464 -67030705 - L2 LINE L2 0 3272 3164 2263 102 3 0 chr13 34843800 34844104 -67029065 + AluSq SINE Alu 7 311 -2 1248 157 144 0 chr13 34845192 34845421 -67027748 - MLT1B LTR MaLR -2 388 127 1552 155 44 25 chr13 34845439 34846146 -67027023 + LTR1B LTR ERV1 1 826 0 459 65 0 117 chr13 34846146 34846222 -67026947 - MLT1B LTR MaLR -300 90 24 451 167 0 0 chr13 34846502 34846580 -67026589 + MIR SINE MIR 164 241 -21 1047 201 35 15 chr13 34847347 34847546 -67025623 + MER3 DNA MER1_type 1 203 -6 365 298 0 19 chr13 34848028 34848132 -67025037 - L2 LINE L2 0 3272 3171 24 53 0 0 chr13 34850037 34850075 -67023094 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 34851086 34851116 -67022053 + AT_rich Low_complexity Low_complexity 1 30 0 489 220 21 14 chr13 34851132 34851273 -67021896 - L1MB8 LINE L1 -6 6408 6267 1818 29 0 0 chr13 34851284 34851490 -67021679 - AluY SINE Alu -18 293 88 7727 208 66 35 chr13 34851492 34852636 -67020533 - L1MB8 LINE L1 -280 6140 5033 2047 134 17 3 chr13 34852636 34852928 -67020241 - AluSx SINE Alu -14 298 3 7727 208 66 35 chr13 34852928 34854308 -67018861 - L1MB8 LINE L1 -1387 5033 3471 228 135 0 0 chr13 34854308 34854345 -67018824 - tRNA-Gly-GGA tRNA tRNA -36 39 3 7727 208 66 35 chr13 34854345 34854847 -67018322 - L1MB8 LINE L1 -2949 3471 2986 1151 191 15 5 chr13 34854847 34855051 -67018118 + AluJo SINE Alu 87 292 -20 674 206 76 45 chr13 34855058 34855492 -67017677 - L1MB8 LINE L1 -3391 2991 2478 1409 174 76 14 chr13 34855492 34855767 -67017402 + AluJo SINE Alu 1 292 -20 674 206 76 45 chr13 34855767 34855803 -67017366 - L1MB8 LINE L1 -3904 2478 2445 1064 93 0 7 chr13 34855805 34855944 -67017225 - AluSg/x SINE Alu -17 293 156 483 181 0 0 chr13 34856089 34856161 -67017008 - AluS SINE Alu -238 75 4 621 262 67 41 chr13 34856163 34856628 -67016541 - L1MB8 LINE L1 -3942 2442 1966 325 308 119 13 chr13 34856893 34857052 -67016117 + MIR3 SINE MIR 31 206 -2 1698 144 0 4 chr13 34857337 34857609 -67015560 + AluJo SINE Alu 48 318 0 310 309 189 24 chr13 34858019 34858352 -67014817 - L1ME LINE L1 -366 5804 5417 4355 173 24 14 chr13 34859271 34860178 -67012991 - L1 LINE L1 -2068 4078 3163 38 258 0 0 chr13 34860477 34860566 -67012603 + AT_rich Low_complexity Low_complexity 1 89 0 31 26 0 0 chr13 34861069 34861107 -67012062 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 34861543 34861571 -67011598 + AT_rich Low_complexity Low_complexity 1 28 0 2237 241 28 31 chr13 34862746 34863352 -67009817 + L1M4 LINE L1 5 608 -5934 498 296 73 57 chr13 34863618 34863865 -67009304 + MIR SINE MIR 11 261 -1 624 250 128 0 chr13 34863949 34864121 -67009048 + MLT1I LTR MaLR 214 407 -2 283 284 83 43 chr13 34864584 34864908 -67008261 + L1M4 LINE L1 4009 4345 -2299 38028 62 25 2 chr13 34864912 34870926 -67002243 + L1PA7 LINE L1 2 6154 0 1561 226 101 58 chr13 34871662 34871824 -67001345 + L1ME LINE L1 2153 2307 -4337 1628 169 14 32 chr13 34871824 34872108 -67001061 + AluJb SINE Alu 2 280 -32 1561 226 101 58 chr13 34872108 34872757 -67000412 + L1ME LINE L1 2307 2927 -3717 2077 142 0 6 chr13 34872757 34873068 -67000101 + AluJb SINE Alu 1 309 -3 1561 226 101 58 chr13 34873068 34873114 -67000055 + L1ME LINE L1 2927 2970 -3674 2052 146 36 11 chr13 34873114 34873471 -66999698 - MER47A DNA MER2_type 0 366 1 1561 226 101 58 chr13 34873471 34873518 -66999651 + L1ME LINE L1 2970 3062 -3582 1166 200 92 19 chr13 34873531 34873915 -66999254 + L1ME LINE L1 5509 5919 -743 389 225 12 50 chr13 34873939 34874099 -66999070 + L1MA10 LINE L1 6180 6333 -1 269 272 43 22 chr13 34874664 34874756 -66998413 - MIR SINE MIR -68 194 101 419 265 71 0 chr13 34875157 34875255 -66997914 - L2 LINE L2 0 3272 3168 28 29 0 0 chr13 34875295 34875330 -66997839 + AT_rich Low_complexity Low_complexity 1 35 0 371 319 48 59 chr13 34875600 34875873 -66997296 - L2 LINE L2 -556 2758 2489 217 210 16 16 chr13 34877574 34877636 -66995533 + T-rich Low_complexity Low_complexity 4 65 0 2297 97 0 19 chr13 34877932 34878242 -66994927 - AluSg SINE Alu -6 304 1 2011 234 106 14 chr13 34879485 34880152 -66993017 + L1MC4a LINE L1 7079 7807 -1 201 306 0 48 chr13 34880928 34880990 -66992179 - MER5A DNA MER1_type -130 59 1 258 169 13 52 chr13 34881088 34881165 -66992004 + L1ME LINE L1 6309 6382 -237 764 255 64 33 chr13 34881353 34881682 -66991487 - MLT1J1 LTR MaLR -22 424 86 23 0 0 0 chr13 34881752 34881775 -66991394 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 34881910 34881933 -66991236 + (TG)n Simple_repeat Simple_repeat 2 24 0 261 83 0 0 chr13 34882226 34882262 -66990907 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 432 307 157 11 chr13 34883047 34883314 -66989855 - LTR16A LTR ERVL -88 362 57 2313 112 0 13 chr13 34883423 34883735 -66989434 - AluSx SINE Alu -2 310 3 574 279 95 52 chr13 34885296 34885706 -66987463 + MLT1J LTR MaLR 1 526 -89 27 0 0 0 chr13 34885758 34885785 -66987384 + AT_rich Low_complexity Low_complexity 1 27 0 268 167 45 0 chr13 34885808 34885874 -66987295 + CT-rich Low_complexity Low_complexity 2 70 0 233 275 75 20 chr13 34886232 34886432 -66986737 + L1ME4a LINE L1 5754 5964 -157 715 258 107 9 chr13 34886795 34887028 -66986141 + MLT1H1 LTR MaLR 246 501 -54 2477 43 26 0 chr13 34887284 34887586 -66985583 + AluY SINE Alu 1 310 -1 2101 99 0 0 chr13 34889493 34889765 -66983404 + AluSx SINE Alu 1 272 -40 341 105 0 0 chr13 34890373 34890430 -66982739 + Alu SINE Alu 243 299 -3 318 232 21 11 chr13 34890638 34890733 -66982436 + LTR33A LTR ERVL 405 500 -23 378 288 59 33 chr13 34890950 34891103 -66982066 - MIR SINE MIR -71 191 35 2247 189 33 29 chr13 34891103 34891585 -66981584 + MER31A LTR ERV1 2 485 0 2287 102 0 0 chr13 34892126 34892420 -66980749 - AluSg SINE Alu -16 294 1 2053 149 0 0 chr13 34892690 34892991 -66980178 - AluSx SINE Alu -10 302 2 22 35 0 0 chr13 34893509 34893538 -66979631 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 34893704 34893728 -66979441 + AT_rich Low_complexity Low_complexity 1 24 0 382 341 81 17 chr13 34894419 34894592 -66978577 + MER5A DNA MER1_type 5 188 -1 2430 97 7 0 chr13 34894768 34895077 -66978092 - AluSp SINE Alu -2 311 1 514 250 138 40 chr13 34895481 34895705 -66977464 - MIR SINE MIR -13 249 4 209 296 30 91 chr13 34895901 34896035 -66977134 + L2 LINE L2 1720 1840 -1474 2024 188 31 74 chr13 34896035 34896577 -66976592 - LTR40a LTR ERVL 0 519 1 209 296 30 91 chr13 34896577 34896641 -66976528 + L2 LINE L2 1840 1906 -1408 1397 314 131 51 chr13 34896697 34897932 -66975237 - L2 LINE L2 -6 3266 1931 181 261 62 46 chr13 34897936 34898001 -66975168 - MIR SINE MIR -118 144 79 299 270 20 20 chr13 34898262 34898362 -66974807 + MER5B DNA MER1_type 43 142 -36 305 272 59 101 chr13 34900335 34900504 -66972665 - MER5B DNA MER1_type 0 178 17 184 232 125 0 chr13 34901220 34901276 -66971893 - L3b LINE CR1 -244 1339 1277 268 340 119 5 chr13 34901288 34901473 -66971696 - MIR SINE MIR -10 252 47 518 302 114 20 chr13 34901490 34901841 -66971328 + L1ME4a LINE L1 5736 6119 -2 266 316 105 30 chr13 34902067 34902200 -66970969 - MIR3 SINE MIR -63 145 3 206 225 0 28 chr13 34903120 34903191 -66969978 + G-rich Low_complexity Low_complexity 3 71 0 24 53 0 0 chr13 34903274 34903312 -66969857 + AT_rich Low_complexity Low_complexity 1 38 0 438 171 34 77 chr13 34903463 34903580 -66969589 - L1PB4 LINE L1 -7 6149 6038 362 317 92 32 chr13 34904082 34904331 -66968838 - L2 LINE L2 -24 3248 2985 495 329 30 0 chr13 34904509 34904673 -66968496 - L2 LINE L2 -572 2742 2574 210 313 24 24 chr13 34904965 34905048 -66968121 - MIR SINE MIR -149 113 31 433 237 26 9 chr13 34906588 34906702 -66966467 - MIR SINE MIR 0 262 147 29 28 0 0 chr13 34906716 34906752 -66966417 + AT_rich Low_complexity Low_complexity 1 36 0 837 145 0 15 chr13 34906752 34906883 -66966286 - FLAM_C SINE Alu -4 129 1 325 284 71 16 chr13 34906888 34907015 -66966154 - MIR SINE MIR -58 150 17 392 231 19 28 chr13 34907184 34907292 -66965877 - MIR SINE MIR -90 172 66 14045 202 28 19 chr13 34907358 34913336 -66959833 - L1MA5A LINE L1 -10 6929 890 21 0 0 0 chr13 34914220 34914241 -66958928 + AT_rich Low_complexity Low_complexity 1 21 0 * 28747 114 8 64 chr13 34914233 34914245 -66958924 - L1PA3 LINE L1 0 6155 6144 5240 64 0 3 chr13 34914245 34914920 -66958249 - L1PA7 LINE L1 -6 6148 5476 28747 114 8 64 chr13 34914920 34918238 -66954931 - L1PA3 LINE L1 -11 6144 3375 2320 117 3 0 chr13 34918238 34918547 -66954622 - AluY SINE Alu -1 310 1 28747 114 8 64 chr13 34918547 34921734 -66951435 - L1PA3 LINE L1 -2780 3375 12 285 198 231 58 chr13 34921734 34921855 -66951314 - MIR3 SINE MIR -50 158 17 246 264 41 91 chr13 34922392 34922513 -66950656 + MIR SINE MIR 93 207 -55 193 283 163 43 chr13 34923085 34923177 -66949992 - MIR SINE MIR -85 123 21 1090 119 0 19 chr13 34923500 34923660 -66949509 - AluSx SINE Alu -12 300 144 1047 85 8 0 chr13 34923802 34923931 -66949238 - AluSx SINE Alu -173 139 10 468 350 159 15 chr13 34923962 34924836 -66948333 + L2 LINE L2 1978 2977 -337 446 237 37 104 chr13 34925070 34925323 -66947846 + MIR SINE MIR 9 240 -22 330 132 0 0 chr13 34926400 34926453 -66946716 + (T)n Simple_repeat Simple_repeat 1 53 0 5633 113 15 19 chr13 34928356 34929447 -66943722 - L1PA13 LINE L1 -3 6160 5080 1594 160 8 37 chr13 34929580 34929848 -66943321 - AluJo SINE Alu -31 281 22 238 224 106 47 chr13 34930210 34930295 -66942874 - MIR SINE MIR -20 242 153 1784 169 39 74 chr13 34930303 34930666 -66942503 + MLT1C LTR MaLR 1 344 -123 2595 117 38 17 chr13 34930666 34931084 -66942085 - MSTA LTR MaLR 0 428 2 1784 169 39 74 chr13 34931084 34931204 -66941965 + MLT1C LTR MaLR 344 467 0 300 229 76 19 chr13 34931546 34931651 -66941518 + MER103 DNA DNA 54 164 -2 519 236 94 42 chr13 34931931 34932122 -66941047 - MER90 LTR ERV1 -1 613 413 284 326 56 22 chr13 34932278 34932456 -66940713 - MER89-int LTR ERV1 -408 6393 6210 2499 183 40 4 chr13 34932501 34932972 -66940197 + MLT2B3 LTR ERVL 21 508 -46 238 50 50 0 chr13 34932973 34933013 -66940156 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 382 68 99 19 chr13 34933051 34933213 -66939956 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 334 103 17 0 chr13 34933214 34933272 -66939897 + MLT2B3 LTR ERVL 462 520 0 609 183 0 0 chr13 34933769 34933862 -66939307 - AluJb SINE Alu -58 254 162 13343 92 5 2 chr13 34933909 34936584 -66936585 - L1PA7 LINE L1 -1 6153 3463 592 350 29 51 chr13 34936793 34937319 -66935850 - MER89-int LTR ERV1 -3152 3649 3136 25 65 0 0 chr13 34937467 34937513 -66935656 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr13 34937553 34937579 -66935590 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr13 34938738 34938781 -66934388 + AT_rich Low_complexity Low_complexity 1 43 0 238 293 0 0 chr13 34939168 34939226 -66933943 + GA-rich Low_complexity Low_complexity 3 60 0 379 163 25 25 chr13 34940297 34940377 -66932792 - MER90 LTR ERV1 0 614 535 427 186 115 0 chr13 34940594 34940707 -66932462 - L1MD1 LINE L1 -19 6617 6492 1127 167 11 5 chr13 34940709 34940895 -66932274 - AluJb SINE Alu -4 308 122 689 137 18 30 chr13 34940895 34941063 -66932106 + CT-rich Low_complexity Low_complexity 4 169 0 253 132 0 0 chr13 34941081 34941119 -66932050 - FLAM SINE Alu -24 109 72 3872 179 56 20 chr13 34941119 34942165 -66931004 - L1MD1 LINE L1 -135 6501 5409 35102 77 14 7 chr13 34942179 34947161 -66926008 + L1PA5 LINE L1 11 5028 -1118 7237 44 3 0 chr13 34947164 34948054 -66925115 + L1PA5 LINE L1 5254 6146 -8 3620 218 71 83 chr13 34948067 34949883 -66923286 - L1MD1 LINE L1 -1121 5419 3582 889 180 25 0 chr13 34949883 34950044 -66923125 + AluJb SINE Alu 1 165 -147 3620 218 71 83 chr13 34950044 34951237 -66921932 - L1MD1 LINE L1 -2958 3582 2376 266 87 22 0 chr13 34951237 34951283 -66921886 + (TA)n Simple_repeat Simple_repeat 1 47 0 3620 218 71 83 chr13 34951283 34951602 -66921567 - L1MD1 LINE L1 -4164 2376 1990 2032 125 3 3 chr13 34951602 34951936 -66921233 - AluSq SINE Alu 0 313 1 3620 218 71 83 chr13 34951936 34952133 -66921036 - L1MD1 LINE L1 -4550 1990 1792 495 268 122 18 chr13 34954589 34954753 -66918416 - MIR SINE MIR -9 253 73 665 300 33 49 chr13 34954932 34955322 -66917847 + HAL1 LINE L1 501 884 -1623 1700 245 97 9 chr13 34955373 34955780 -66917389 + HAL1 LINE L1 1710 2200 -307 3725 168 23 34 chr13 34955780 34956520 -66916649 + MER44D DNA MER2_type 2 605 0 1700 245 97 9 chr13 34956520 34956782 -66916387 + HAL1 LINE L1 2200 2438 -69 30 27 0 0 chr13 34956826 34956863 -66916306 + AT_rich Low_complexity Low_complexity 1 37 0 417 242 2 7 chr13 34957076 34957213 -66915956 - MLT1L LTR MaLR 0 615 454 1117 156 123 0 chr13 34958934 34959146 -66914023 - LTR64 LTR ERVK -90 468 231 2313 123 0 0 chr13 34959157 34959466 -66913703 - AluSq SINE Alu -4 309 1 2128 127 31 20 chr13 34959466 34959820 -66913349 - THE1B LTR MaLR -6 358 1 1542 127 0 0 chr13 34959820 34960056 -66913113 - LTR64 LTR ERVK -322 236 1 1385 182 92 26 chr13 34960569 34961167 -66912002 - LOR1-int LTR ERV1 -1682 4916 2471 714 192 10 54 chr13 34961245 34961448 -66911721 - LOR1-int LTR ERV1 -2869 3729 3536 3225 162 30 54 chr13 34961532 34962653 -66910516 - LOR1-int LTR ERV1 -4279 2479 1220 4022 152 14 1 chr13 34962662 34963372 -66909797 - L1PB4 LINE L1 -7 6149 5431 625 229 0 0 chr13 34963416 34963547 -66909622 - FLAM_C SINE Alu -6 137 7 2931 180 51 16 chr13 34963551 34964312 -66908857 - L1PB4 LINE L1 -743 5403 4654 3914 152 51 30 chr13 34964315 34965252 -66907917 - LTR57-int LTR ERVL -4073 1270 313 576 301 51 47 chr13 34965519 34965775 -66907394 - LOR1-int LTR ERV1 -6135 623 367 3348 125 60 4 chr13 34966182 34966695 -66906474 - LTR64 LTR ERVK -16 542 1 226 204 0 0 chr13 34966818 34966862 -66906307 - L1ME3A LINE L1 -219 5951 5908 414 321 115 2 chr13 34966930 34967241 -66905928 - L1ME3A LINE L1 -399 5771 5425 436 296 167 14 chr13 34967485 34967701 -66905468 - MIR SINE MIR 0 262 14 489 327 82 44 chr13 34968103 34968531 -66904638 - L1MEd LINE L1 -5353 766 323 943 268 49 70 chr13 34968533 34969083 -66904086 + MLT1G3 LTR MaLR 1 583 -12 763 243 45 28 chr13 34969493 34969740 -66903429 + L2 LINE L2 1822 2072 -1242 423 0 0 0 chr13 34969769 34969816 -66903353 + (TG)n Simple_repeat Simple_repeat 2 48 0 242 309 120 76 chr13 34970281 34970572 -66902597 - L2 LINE L2 0 3272 2969 2965 111 14 5 chr13 34971159 34971583 -66901586 + L1PB1 LINE L1 5723 6150 -1 2375 169 74 89 chr13 34971705 34972233 -66900936 + MLT2B1 LTR ERVL 1 520 0 348 302 47 7 chr13 34972454 34972610 -66900559 + MIR SINE MIR 31 195 -67 1589 181 48 56 chr13 34973913 34974288 -66898881 - MLT1B LTR MaLR -16 374 3 1367 287 29 22 chr13 34974688 34974991 -66898178 + L2 LINE L2 2860 3168 -145 2241 153 16 19 chr13 34974991 34975357 -66897812 - MER47A DNA MER2_type 0 366 2 1367 287 29 22 chr13 34975357 34975503 -66897666 + L2 LINE L2 3168 3312 -1 439 251 36 72 chr13 34976225 34976380 -66896789 + MIR SINE MIR 19 169 -63 496 145 24 0 chr13 34977206 34977289 -66895880 + Charlie1 DNA MER1_type 2661 2745 -16 357 194 15 0 chr13 34977302 34977369 -66895800 + Charlie1 DNA MER1_type 2694 2761 0 365 239 202 0 chr13 34978135 34978244 -66894925 + MIR SINE MIR 47 177 -85 184 400 42 0 chr13 34978417 34978512 -66894657 - L2 LINE L2 -23 3249 3151 1267 141 137 0 chr13 34978571 34978812 -66894357 - L1MC1 LINE L1 0 6333 6060 2285 176 37 60 chr13 34979076 34979588 -66893581 + MLT1D LTR MaLR 6 505 0 483 321 66 10 chr13 34980025 34980221 -66892948 - MIR SINE MIR 0 262 56 290 270 103 32 chr13 34980273 34980399 -66892770 + MIR SINE MIR 20 154 -108 690 332 21 0 chr13 34980414 34980652 -66892517 + MIR SINE MIR 3 245 -17 206 204 0 23 chr13 34982369 34982413 -66890756 - MIR SINE MIR -50 212 170 5700 84 20 8 chr13 34982528 34983267 -66889902 + L1PA11 LINE L1 5420 6167 -7 519 315 62 28 chr13 34983345 34983598 -66889571 - MIR SINE MIR 0 262 3 320 310 49 15 chr13 34983877 34984020 -66889149 + MIR SINE MIR 16 163 -45 294 333 77 39 chr13 34984414 34984621 -66888548 + MIR SINE MIR 42 256 -6 329 383 62 29 chr13 34985636 34986139 -66887030 - L2 LINE L2 -212 3060 2542 5289 199 44 13 chr13 34987527 34988998 -66884171 - L1MD2 LINE L1 0 6359 4848 4315 169 60 40 chr13 34989006 34989045 -66884124 + L1MB3 LINE L1 5173 5210 -973 2223 158 92 5 chr13 34989045 34989437 -66883732 + MSTB LTR MaLR 1 426 0 4315 169 60 40 chr13 34989437 34989980 -66883189 + L1MB3 LINE L1 5210 5781 -402 1791 171 25 109 chr13 34989980 34990412 -66882757 + MSTD LTR MaLR 1 396 0 4315 169 60 40 chr13 34990412 34990822 -66882347 + L1MB3 LINE L1 5781 6181 -2 1772 219 16 14 chr13 34990817 34991246 -66881923 - L1MD2 LINE L1 -1286 4860 4431 * 563 330 11 5 chr13 34992920 34993105 -66880064 - MIR SINE MIR -21 241 56 2141 110 3 0 chr13 34993116 34993407 -66879762 - AluSg SINE Alu -12 298 7 305 255 59 20 chr13 34994822 34994924 -66878245 + L2 LINE L2 3164 3269 -44 307 262 76 131 chr13 34994993 34995230 -66877939 + MIR SINE MIR 8 231 -31 840 284 45 0 chr13 34996145 34996367 -66876802 - MIR SINE MIR 0 262 31 362 308 54 0 chr13 34996984 34997114 -66876055 + L2 LINE L2 3136 3272 0 1506 157 82 37 chr13 34997307 34997601 -66875568 + AluJo SINE Alu 1 307 -5 456 65 16 0 chr13 34997732 34997794 -66875375 + MADE1 DNA Mariner 18 80 0 254 261 33 22 chr13 34998190 34998282 -66874887 - L1MC4 LINE L1 -16 8026 7934 2394 87 3 0 chr13 34998415 34998715 -66874454 - AluSx SINE Alu -11 301 1 353 323 125 22 chr13 34998944 34999176 -66873993 - L1MC/D LINE L1 -2055 5577 5322 1110 193 97 75 chr13 34999193 34999648 -66873521 - L1MC4 LINE L1 -16 8026 7562 621 274 163 16 chr13 34999651 35000226 -66872943 - L1MC/D LINE L1 -660 5330 4674 398 288 12 62 chr13 35000257 35000397 -66872772 - L1ME LINE L1 -519 5643 5498 2718 98 31 17 chr13 35000397 35000756 -66872413 + THE1B LTR MaLR 1 364 0 13022 82 9 1 chr13 35000756 35002323 -66870846 + THE1B-int LTR MaLR 1 1580 0 2571 122 28 17 chr13 35002323 35002683 -66870486 + THE1B LTR MaLR 1 364 0 398 288 12 62 chr13 35002683 35002700 -66870469 - L1ME LINE L1 -661 5501 5492 185 299 138 0 chr13 35002963 35003050 -66870119 + MIR SINE MIR 164 262 0 376 385 115 7 chr13 35003053 35003349 -66869820 + L2 LINE L2 2403 2730 -584 541 264 115 0 chr13 35003569 35003751 -66869418 + MIR SINE MIR 8 210 -52 278 286 66 33 chr13 35003902 35003993 -66869176 + MLT1K LTR MaLR 104 197 -391 1218 249 72 34 chr13 35004400 35004845 -66868324 + MLT1C LTR MaLR 6 467 0 545 258 8 0 chr13 35005075 35005203 -66867966 - MER94 DNA DNA -1 133 5 2509 124 113 10 chr13 35005270 35005658 -66867511 - MSTA LTR MaLR 0 428 1 679 228 84 18 chr13 35006145 35006312 -66866857 + MER5B DNA MER1_type 1 178 0 2548 103 48 50 chr13 35006414 35006813 -66866356 + MER48 LTR ERV1 1 398 0 350 314 176 41 chr13 35007902 35008220 -66864949 + L2 LINE L2 2904 3264 -8 246 296 0 28 chr13 35008398 35008469 -66864700 - MIR3 SINE MIR -125 83 15 501 303 68 0 chr13 35008958 35009120 -66864049 - MIR SINE MIR -21 241 69 433 304 144 29 chr13 35009184 35009427 -66863742 + L1MC/D LINE L1 5536 5806 -2002 335 307 11 0 chr13 35009752 35009840 -66863329 - LTR67 LTR ERVL -377 180 92 4965 216 39 79 chr13 35010169 35010536 -66862633 - L1MC/D LINE L1 -1746 4224 3844 697 101 0 0 chr13 35010536 35010625 -66862544 + 5S rRNA rRNA 1 89 -32 4965 216 39 79 chr13 35010625 35011876 -66861293 - L1MC/D LINE L1 -2126 3844 2587 3389 252 76 41 chr13 35011865 35012349 -66860820 - L1M1 LINE L1 -3627 2343 1877 * 4870 82 8 2 chr13 35012349 35012945 -66860224 - MER4A LTR ERV1 0 600 1 3389 252 76 41 chr13 35012945 35013227 -66859942 - L1M1 LINE L1 -4093 1877 1606 2820 138 7 9 chr13 35013227 35013662 -66859507 - MER57B LTR ERV1 0 434 1 3389 252 76 41 chr13 35013662 35014331 -66858838 - L1M1 LINE L1 -4364 1606 845 180 0 0 0 chr13 35014331 35014351 -66858818 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3389 252 76 41 chr13 35014351 35014829 -66858340 - L1M1 LINE L1 -5125 845 385 571 288 77 55 chr13 35015074 35015400 -66857769 - L1M1 LINE L1 -5558 333 1 2324 175 89 69 chr13 35016123 35016631 -66856538 + MLT2B1 LTR ERVL 3 520 0 459 0 0 0 chr13 35018219 35018270 -66854899 + (TG)n Simple_repeat Simple_repeat 2 52 0 266 279 15 0 chr13 35018270 35018338 -66854831 + L2 LINE L2 3193 3261 -11 250 229 186 42 chr13 35018513 35018631 -66854538 + MIR SINE MIR 120 254 -8 202 276 86 95 chr13 35018884 35018989 -66854180 + L2 LINE L2 3169 3272 0 329 285 65 83 chr13 35019095 35019427 -66853742 + L2 LINE L2 2716 3063 -209 800 265 78 37 chr13 35019427 35019667 -66853502 - L2 LINE L2 0 3313 3055 1393 263 87 11 chr13 35019667 35020047 -66853122 - MLT1I LTR MaLR 0 409 1 800 265 78 37 chr13 35020047 35020127 -66853042 - L2 LINE L2 -258 3055 2980 1481 232 44 25 chr13 35020131 35020605 -66852564 + L2 LINE L2 2413 2895 -419 263 325 39 13 chr13 35020614 35020691 -66852478 - L2 LINE L2 -1 3312 3234 303 93 0 0 chr13 35020847 35020890 -66852279 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr13 35020889 35020909 -66852260 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chr13 35022138 35022169 -66851000 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 208 303 148 21 chr13 35023165 35023307 -66849862 + MIR SINE MIR 47 206 -56 511 304 51 33 chr13 35023648 35023862 -66849307 - LTR67 LTR ERVL -3 554 337 23 0 0 0 chr13 35024144 35024167 -66849002 + AT_rich Low_complexity Low_complexity 1 23 0 4789 154 11 62 chr13 35024190 35025174 -66847995 - L1MA7 LINE L1 -4 6287 5354 1665 309 68 22 chr13 35025399 35026169 -66847000 - ERVL LTR ERVL -501 5263 4459 5731 215 49 33 chr13 35026219 35027634 -66845535 - L1PBa LINE L1 -3916 2947 2390 1812 146 71 0 chr13 35027634 35027901 -66845268 + AluSx SINE Alu 13 298 -14 5731 215 49 33 chr13 35027901 35029950 -66843219 - L1PBa LINE L1 -4473 2390 376 269 255 49 49 chr13 35029950 35030052 -66843117 - ERVL LTR ERVL -1583 4181 4080 287 238 95 12 chr13 35030098 35030182 -66842987 - ERVL LTR ERVL -2346 3418 3328 1158 318 75 28 chr13 35030332 35031007 -66842162 - ERVL LTR ERVL -1912 3084 2413 2355 139 24 9 chr13 35031031 35031370 -66841799 + MER2 DNA MER2_type 1 344 0 742 200 74 7 chr13 35031422 35031588 -66841581 + MLT1B LTR MaLR 1 176 -198 450 0 0 0 chr13 35031588 35031638 -66841531 + (TC)n Simple_repeat Simple_repeat 1 50 0 742 200 74 7 chr13 35031638 35031649 -66841520 + MLT1B LTR MaLR 176 185 -189 343 336 0 0 chr13 35032142 35032261 -66840908 - ERVL LTR ERVL -5134 630 512 206 188 16 31 chr13 35032291 35032355 -66840814 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 393 213 0 0 chr13 35032475 35032550 -66840619 - LTR67 LTR ERVL -2 555 481 1012 59 0 0 chr13 35032562 35032681 -66840488 + AluY SINE Alu 1 119 -192 865 260 100 82 chr13 35032694 35033183 -66839986 - LTR67 LTR ERVL -58 499 2 2408 35 6 35 chr13 35033233 35033546 -66839623 + AluY SINE Alu 1 304 -7 205 190 52 35 chr13 35033714 35033772 -66839397 + MER91 DNA MER1_type 1 59 -81 203 366 9 9 chr13 35033799 35033911 -66839258 + MIR SINE MIR 12 123 -139 1084 223 48 0 chr13 35034084 35034290 -66838879 + MER20 DNA MER1_type 4 219 0 1047 208 14 27 chr13 35034569 35034790 -66838379 + MER20 DNA MER1_type 1 218 -1 193 230 81 68 chr13 35035224 35035298 -66837871 - L2 LINE L2 -10 3262 3188 1160 161 12 33 chr13 35035590 35035620 -66837549 - MSTB LTR MaLR -1 425 396 1435 150 26 9 chr13 35035620 35035846 -66837323 + MER30 DNA MER1_type 1 230 0 1160 161 12 33 chr13 35035846 35036148 -66837021 - MSTB LTR MaLR -30 396 1 223 172 52 35 chr13 35036345 35036403 -66836766 + MER91 DNA MER1_type 1 59 -81 392 324 7 7 chr13 35036430 35036566 -66836603 + MIR SINE MIR 12 147 -115 394 274 119 32 chr13 35038186 35038431 -66834738 + MIR SINE MIR 1 262 0 2069 110 4 7 chr13 35038441 35038749 -66834420 - AluSx SINE Alu 0 310 4 1392 132 19 0 chr13 35038750 35038955 -66834214 + Tigger1 DNA MER2_type 364 572 -1846 721 203 0 0 chr13 35038955 35039073 -66834096 - FLAM_C SINE Alu -15 118 1 651 313 110 26 chr13 35039156 35039466 -66833703 - L2 LINE L2 0 3272 2937 2283 118 0 0 chr13 35039734 35040040 -66833129 + AluSx SINE Alu 1 306 -6 618 247 96 60 chr13 35040566 35040817 -66832352 - MIR SINE MIR -1 261 2 324 298 85 0 chr13 35040909 35041050 -66832119 + L1ME LINE L1 5672 5824 -297 1254 296 69 21 chr13 35041055 35041521 -66831648 + HAL1 LINE L1 1 488 -2019 1982 268 137 0 chr13 35041575 35042231 -66830938 + L2 LINE L2 1956 2701 -613 509 292 120 0 chr13 35042226 35042435 -66830734 + L2 LINE L2 2837 3070 -243 * 1895 129 37 0 chr13 35042443 35042741 -66830428 - AluSq SINE Alu 0 308 1 257 280 0 0 chr13 35042816 35042866 -66830303 + MIR SINE MIR 204 253 -9 441 287 32 6 chr13 35042937 35043094 -66830075 + HAL1 LINE L1 605 765 -1742 507 184 11 0 chr13 35043110 35043197 -66829972 + MER81 DNA DNA 26 113 -1 3369 255 164 33 chr13 35043198 35044730 -66828439 + HAL1 LINE L1 761 2494 -13 2732 26 0 6 chr13 35044730 35045058 -66828111 - AluYa5 SINE Alu 0 326 1 484 236 179 61 chr13 35045075 35045174 -66827995 - L1ME3A LINE L1 -5 6165 6079 2196 122 0 0 chr13 35045174 35045468 -66827701 - AluSx SINE Alu -18 294 1 484 236 179 61 chr13 35045468 35045597 -66827572 - L1ME3A LINE L1 -91 6079 5910 205 222 25 12 chr13 35045601 35045668 -66827501 + (TAA)n Simple_repeat Simple_repeat 2 72 -11 361 121 60 96 chr13 35045668 35045751 -66827418 - MADE1 DNA Mariner 0 80 1 205 222 25 12 chr13 35045751 35045764 -66827405 + (TAA)n Simple_repeat Simple_repeat 72 83 0 501 262 87 4 chr13 35045777 35045968 -66827201 - L1ME3A LINE L1 -272 5898 5727 530 323 113 50 chr13 35046104 35046503 -66826666 - L2 LINE L2 0 3272 2849 255 296 68 0 chr13 35046560 35046648 -66826521 - L2 LINE L2 -1407 1907 1814 270 0 0 0 chr13 35047049 35047079 -66826090 + (CA)n Simple_repeat Simple_repeat 2 31 0 30 0 0 0 chr13 35047963 35047993 -66825176 + AT_rich Low_complexity Low_complexity 1 30 0 191 308 158 17 chr13 35048114 35048234 -66824935 - L2 LINE L2 -2 3311 3175 236 30 30 0 chr13 35048962 35048995 -66824174 + (TC)n Simple_repeat Simple_repeat 2 35 0 239 343 41 68 chr13 35049332 35049478 -66823691 - L2 LINE L2 -5 3267 3126 456 220 5 151 chr13 35049892 35050110 -66823059 + L2 LINE L2 3095 3280 -33 237 132 0 0 chr13 35050125 35050163 -66823006 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 370 294 73 45 chr13 35051216 35051393 -66821776 + MIR SINE MIR 25 206 -56 342 302 9 17 chr13 35051682 35051798 -66821371 - L2 LINE L2 -2 3270 3156 989 275 69 125 chr13 35052040 35052665 -66820504 + L2 LINE L2 1755 2319 -995 1817 156 9 41 chr13 35052665 35052985 -66820184 - AluJb SINE Alu -2 310 1 989 275 69 125 chr13 35052985 35053233 -66819936 + L2 LINE L2 2319 2579 -735 811 244 79 125 chr13 35053208 35053546 -66819623 + L2 LINE L2 2816 3123 -190 * 2261 97 3 0 chr13 35053546 35053834 -66819335 + AluSx SINE Alu 1 289 -23 811 244 79 125 chr13 35053834 35054016 -66819153 + L2 LINE L2 3123 3312 -1 439 296 26 7 chr13 35054537 35054689 -66818480 - MER117 DNA MER1_type -42 155 1 381 241 175 0 chr13 35055062 35055199 -66817970 + MIR SINE MIR 92 252 -10 194 383 33 17 chr13 35056658 35056778 -66816391 - L3b LINE CR1 -121 1462 1341 1602 196 11 48 chr13 35056967 35057324 -66815845 - L1MD3 LINE L1 -296 7699 7356 2130 171 11 14 chr13 35057466 35057829 -66815340 - MLT1A1 LTR MaLR 0 365 4 33 0 0 0 chr13 35057850 35057883 -66815286 + AT_rich Low_complexity Low_complexity 1 33 0 6639 121 27 1 chr13 35057910 35059015 -66814154 - L1MA4 LINE L1 -7 6293 5157 227 254 0 70 chr13 35059480 35059551 -66813618 + L3 LINE CR1 1508 1573 -4 2218 99 30 0 chr13 35059662 35060039 -66813130 + AluSx SINE Alu 1 386 0 905 216 0 82 chr13 35060116 35060348 -66812821 - MER58C DNA MER1_type -1 214 2 359 253 101 0 chr13 35060352 35060451 -66812718 - MER103 DNA DNA -57 109 1 660 292 65 75 chr13 35060597 35061428 -66811741 + L1ME3 LINE L1 5039 5873 -248 1974 144 7 0 chr13 35061428 35061733 -66811436 + AluSp SINE Alu 1 307 -6 660 292 65 75 chr13 35061733 35061825 -66811344 + L1ME3 LINE L1 5873 5964 -157 951 108 0 0 chr13 35061872 35061992 -66811177 - AluSq/x SINE Alu -193 120 1 306 263 90 32 chr13 35064273 35064429 -66808740 - LTR67 LTR ERVL -36 521 357 551 294 181 31 chr13 35066201 35066616 -66806553 - L2 LINE L2 0 3313 2837 301 269 48 54 chr13 35067169 35067336 -66805833 - L2 LINE L2 -560 2754 2589 1843 154 34 3 chr13 35067804 35068097 -66805072 + AluJb SINE Alu 1 302 -10 212 29 0 59 chr13 35068158 35068192 -66804977 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 760 177 26 0 chr13 35068203 35068316 -66804853 - FLAM_C SINE Alu -26 117 2 2132 114 7 3 chr13 35069059 35069349 -66803820 - AluSc SINE Alu -18 291 1 301 284 92 9 chr13 35069736 35069845 -66803324 + MER57A LTR ERV1 1 118 -316 1071 220 103 28 chr13 35070138 35070447 -66802722 + MER57A LTR ERV1 99 403 0 22 35 0 0 chr13 35070472 35070501 -66802668 + AT_rich Low_complexity Low_complexity 1 29 0 591 340 98 18 chr13 35070551 35070951 -66802218 + L3 LINE CR1 678 1109 -468 2224 145 132 8 chr13 35070965 35071345 -66801824 - MSTA LTR MaLR -1 427 1 9254 144 41 42 chr13 35071345 35072924 -66800245 - MSTA-int LTR MaLR 0 1580 3 2027 143 137 8 chr13 35072929 35073301 -66799868 - MSTA LTR MaLR -3 425 6 485 284 72 49 chr13 35073303 35073692 -66799477 - MLT1J LTR MaLR -4 461 106 318 282 212 46 chr13 35073891 35074150 -66799019 + L3 LINE CR1 1276 1577 0 302 289 151 19 chr13 35074221 35074380 -66798789 - MIR SINE MIR -77 185 6 261 327 87 7 chr13 35075507 35075657 -66797512 + MIR3 SINE MIR 30 191 -17 274 180 155 0 chr13 35075726 35075802 -66797367 - MIR SINE MIR -62 146 82 445 261 125 17 chr13 35075837 35076013 -66797156 - HAL1 LINE L1 0 2507 2313 825 193 71 21 chr13 35076029 35076267 -66796902 - HAL1 LINE L1 -279 2228 1979 15751 121 27 21 chr13 35076313 35076681 -66796488 + Tigger1 DNA MER2_type 14 378 -2040 2168 116 0 13 chr13 35076681 35076984 -66796185 - AluSx SINE Alu -10 302 4 15751 121 27 21 chr13 35076984 35078446 -66794723 + Tigger1 DNA MER2_type 378 1865 -553 2327 92 13 0 chr13 35078446 35078749 -66794420 + AluY SINE Alu 2 308 -3 15751 121 27 21 chr13 35078749 35079307 -66793862 + Tigger1 DNA MER2_type 1865 2418 0 1710 259 18 11 chr13 35079307 35079751 -66793418 - HAL1 LINE L1 -555 1952 1506 2825 243 54 41 chr13 35080634 35081094 -66792075 - L1ME3A LINE L1 -270 5900 5448 1922 113 53 25 chr13 35081094 35081242 -66791927 - AluSc SINE Alu -18 291 149 2241 98 40 0 chr13 35081242 35081538 -66791631 - AluSq SINE Alu -5 308 1 1922 113 53 25 chr13 35081538 35081672 -66791497 - AluSc SINE Alu -160 149 1 2825 243 54 41 chr13 35081672 35081992 -66791177 - L1ME3A LINE L1 -722 5448 5134 2062 134 0 7 chr13 35081992 35082298 -66790871 - AluSq SINE Alu -8 305 2 2825 243 54 41 chr13 35082298 35083170 -66789999 - L1ME3A LINE L1 -1036 5134 3653 597 267 112 14 chr13 35083971 35084198 -66788971 - MIR SINE MIR -12 250 5 323 291 80 7 chr13 35084642 35084793 -66788376 + MER103 DNA DNA 4 165 -1 448 319 44 6 chr13 35084928 35085110 -66788059 + L3 LINE CR1 1388 1576 -1 3591 198 48 42 chr13 35085177 35085954 -66787215 + MER21B LTR ERV1 12 792 -71 700 252 156 66 chr13 35086040 35086509 -66786660 - MLT1J LTR MaLR 0 511 1 407 277 60 42 chr13 35087392 35087558 -66785611 + MER5B DNA MER1_type 7 175 -3 390 338 111 8 chr13 35088083 35088317 -66784852 - L3b LINE CR1 -197 1386 1129 427 313 34 56 chr13 35088502 35088681 -66784488 + MIR3 SINE MIR 19 193 -15 644 276 56 28 chr13 35090254 35090468 -66782701 + MIR SINE MIR 17 236 -26 24 0 0 0 chr13 35091801 35091825 -66781344 + AT_rich Low_complexity Low_complexity 1 24 0 492 206 95 123 chr13 35092203 35092446 -66780723 - MER112 DNA MER1_type 0 260 25 2102 123 76 25 chr13 35092516 35092873 -66780296 + THE1C LTR MaLR 1 375 0 345 114 0 0 chr13 35093003 35093058 -66780111 - MLT2D LTR ERVL -2 462 415 229 65 0 0 chr13 35093067 35093113 -66780056 - LTR66 LTR ERVL -171 439 394 294 143 0 0 chr13 35093113 35093162 -66780007 + (CA)n Simple_repeat Simple_repeat 2 50 0 341 87 0 0 chr13 35093243 35093289 -66779880 + MLT2C2 LTR ERVL 417 462 -2 1003 173 115 21 chr13 35093361 35093604 -66779565 - MLT2D LTR ERVL -46 368 103 539 140 65 9 chr13 35093696 35093803 -66779366 - MLT2B1 LTR ERVL -407 113 1 507 264 61 7 chr13 35093906 35094054 -66779115 - MER63A DNA MER1_type 0 210 55 1051 47 0 16 chr13 35094235 35094364 -66778805 - L1PB3 LINE L1 0 6154 6028 2338 112 0 0 chr13 35094544 35094848 -66778321 + AluSx SINE Alu 1 304 -8 621 227 95 103 chr13 35094852 35095178 -66777991 + L1MC5 LINE L1 7390 7712 -249 2680 121 54 5 chr13 35095178 35095584 -66777585 + MSTA LTR MaLR 3 428 0 621 227 95 103 chr13 35095584 35095803 -66777366 + L1MC5 LINE L1 7712 7931 -30 1994 116 22 0 chr13 35096255 35096558 -66776611 + AluSq SINE Alu 1 309 0 5291 117 30 4 chr13 35096615 35097374 -66775795 + MER4E LTR ERV1 1 779 0 264 328 15 22 chr13 35097518 35097652 -66775517 - MIR3 SINE MIR -9 199 67 391 236 77 93 chr13 35097969 35098103 -66775066 - MIR SINE MIR 0 262 130 2402 88 3 0 chr13 35098103 35098409 -66774760 + AluSp SINE Alu 1 307 -6 391 236 77 93 chr13 35098409 35098456 -66774713 - MIR SINE MIR -132 130 84 386 289 95 74 chr13 35098508 35098698 -66774471 + MER91A DNA MER1_type 1 194 -2 292 267 193 11 chr13 35098869 35099045 -66774124 + L1MB7 LINE L1 5975 6182 -2 4815 191 42 24 chr13 35099182 35100195 -66772974 + MER45B DNA AcHobo 8 1039 -1 2090 97 3 79 chr13 35100212 35100542 -66772627 + AluSx SINE Alu 1 305 -7 310 265 88 10 chr13 35100561 35100663 -66772506 - MIR SINE MIR -82 126 17 2212 123 10 0 chr13 35100729 35101031 -66772138 + AluSx SINE Alu 1 305 -7 622 240 125 10 chr13 35101842 35102034 -66771135 - MIR SINE MIR 0 262 49 204 264 97 69 chr13 35102192 35102264 -66770905 - MER91A DNA MER1_type 0 196 123 2005 108 0 30 chr13 35102489 35102786 -66770383 + AluSg SINE Alu 1 288 -22 306 73 0 0 chr13 35102786 35102827 -66770342 + (TA)n Simple_repeat Simple_repeat 1 41 0 1996 135 0 3 chr13 35102844 35103132 -66770037 + AluSg SINE Alu 1 287 -23 26 0 0 0 chr13 35103132 35103158 -66770011 + AT_rich Low_complexity Low_complexity 1 26 0 259 130 0 0 chr13 35103162 35103208 -66769961 - LTR66 LTR ERVL -171 439 394 21 0 0 0 chr13 35104687 35104708 -66768461 + AT_rich Low_complexity Low_complexity 1 21 0 421 258 110 31 chr13 35105414 35105577 -66767592 - MIR SINE MIR -6 256 81 684 226 64 10 chr13 35105710 35105914 -66767255 + MER20B DNA MER1_type 569 783 0 1843 118 135 32 chr13 35107633 35107973 -66765196 - THE1C LTR MaLR 0 375 1 23 78 0 0 chr13 35108593 35108644 -66764525 + AT_rich Low_complexity Low_complexity 1 51 0 258 32 0 0 chr13 35108645 35108657 -66764512 + (TG)n Simple_repeat Simple_repeat 1 43 0 258 32 0 0 chr13 35108657 35108688 -66764481 + (TG)n Simple_repeat Simple_repeat 2 32 0 258 286 143 31 chr13 35108982 35109080 -66764089 - L2 LINE L2 -50 3222 3114 214 200 0 0 chr13 35109658 35109698 -66763471 + (TAA)n Simple_repeat Simple_repeat 2 41 0 3873 243 121 35 chr13 35110191 35111623 -66761546 - L2 LINE L2 -184 3129 1558 180 0 0 0 chr13 35111646 35111666 -66761503 + (A)n Simple_repeat Simple_repeat 1 20 0 190 244 24 0 chr13 35111673 35111714 -66761455 - L2 LINE L2 -1764 1550 1509 1803 182 54 6 chr13 35111790 35112125 -66761044 + MLT1A1 LTR MaLR 15 365 0 183 100 0 0 chr13 35112308 35112338 -66760831 + (T)n Simple_repeat Simple_repeat 1 30 0 374 109 0 18 chr13 35112355 35112410 -66760759 - LTR7 LTR ERV1 -8 442 389 873 115 92 14 chr13 35112580 35112738 -66760431 - LTR7 LTR ERV1 -232 218 1 2863 95 16 29 chr13 35112738 35113189 -66759980 - HERVH LTR ERV1 0 7713 7269 * 16332 168 62 46 chr13 35113171 35116957 -66756212 - HERVH LTR ERV1 -2693 5020 1172 1911 157 67 66 chr13 35116944 35117672 -66755497 - HERVH LTR ERV1 -6668 1045 1 * 1424 183 116 74 chr13 35117672 35118104 -66755065 - LTR7 LTR ERV1 0 450 1 209 145 29 29 chr13 35118578 35118647 -66754522 + GA-rich Low_complexity Low_complexity 2 70 0 262 341 30 0 chr13 35118838 35118973 -66754196 + L2 LINE L2 2247 2385 -929 835 203 88 30 chr13 35120387 35120642 -66752527 + L1ME1 LINE L1 5915 6182 -2 196 176 0 0 chr13 35120680 35120714 -66752455 + L2 LINE L2 3230 3263 -9 187 263 100 12 chr13 35122264 35122344 -66750825 - MIR SINE MIR 0 262 176 1736 186 0 3 chr13 35122707 35122992 -66750177 + AluJo SINE Alu 1 284 -28 2147 117 3 3 chr13 35122995 35123293 -66749876 - AluSg SINE Alu -12 298 1 25 65 0 0 chr13 35123295 35123341 -66749828 + AT_rich Low_complexity Low_complexity 1 46 0 806 268 106 11 chr13 35123422 35123799 -66749370 - L1ME4a LINE L1 -2 6119 5707 252 250 0 0 chr13 35123803 35123859 -66749310 - L1ME4a LINE L1 -452 5669 5614 2397 94 0 0 chr13 35123875 35124182 -66748987 + AluSx SINE Alu 1 307 -5 2362 89 0 13 chr13 35124207 35124340 -66748829 + AluSg SINE Alu 1 134 -176 2473 64 3 6 chr13 35124340 35124652 -66748517 + AluY SINE Alu 1 311 0 2362 89 0 13 chr13 35124652 35124821 -66748348 + AluSg SINE Alu 134 299 -11 246 128 0 0 chr13 35124994 35125033 -66748136 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 235 299 92 40 chr13 35125808 35125982 -66747187 - MIR SINE MIR -46 216 34 3228 94 16 16 chr13 35125989 35126423 -66746746 + MER57B LTR ERV1 1 434 0 624 276 15 67 chr13 35126770 35127038 -66746131 + MIR SINE MIR 1 254 -8 189 132 0 0 chr13 35127039 35127077 -66746092 + (ATG)n Simple_repeat Simple_repeat 2 39 0 719 235 125 14 chr13 35127573 35127808 -66745361 + MIR SINE MIR 2 261 -1 544 240 114 7 chr13 35128508 35128661 -66744508 + MER69 DNA AcHobo 1 2524 -2 280 207 108 54 chr13 35128696 35128807 -66744362 - MER117 DNA MER1_type -79 118 2 1401 206 74 50 chr13 35128923 35129340 -66743829 + MER31B LTR ERV1 1 427 -39 2354 138 33 33 chr13 35129486 35129849 -66743320 + THE1B LTR MaLR 2 364 0 2046 125 4 0 chr13 35130344 35130623 -66742546 + AluSq SINE Alu 1 280 -33 369 0 0 0 chr13 35130623 35130664 -66742505 + (CA)n Simple_repeat Simple_repeat 1 41 0 551 281 34 0 chr13 35131418 35131564 -66741605 + MLT1J1 LTR MaLR 191 341 -105 232 130 0 43 chr13 35132094 35132140 -66741029 - L2 LINE L2 -5 3308 3265 1172 282 68 18 chr13 35132429 35132809 -66740360 - MER115 DNA AcHobo 0 693 295 324 304 20 0 chr13 35132918 35133020 -66740149 - MER115 DNA AcHobo -589 104 1 330 258 60 26 chr13 35133062 35133130 -66740039 - MER103 DNA DNA -10 156 92 1790 193 73 28 chr13 35133130 35133488 -66739681 - MLT1A2 LTR MaLR 0 374 1 330 258 60 26 chr13 35133488 35133570 -66739599 - MER103 DNA DNA -74 92 1 24 32 0 0 chr13 35134840 35134871 -66738298 + AT_rich Low_complexity Low_complexity 1 31 0 805 144 133 16 chr13 35135502 35135775 -66737394 + MLT1E1 LTR MaLR 1 353 -301 367 274 11 21 chr13 35137262 35137357 -66735812 + L2 LINE L2 3149 3242 -30 320 297 79 39 chr13 35137533 35137664 -66735505 - MIR SINE MIR -63 145 30 287 359 114 15 chr13 35138798 35138870 -66734299 + MIR SINE MIR 2 65 -197 2342 112 0 3 chr13 35138870 35139183 -66733986 - AluSx SINE Alu 0 312 1 287 359 114 15 chr13 35139183 35139241 -66733928 + MIR SINE MIR 65 145 -117 2201 222 38 23 chr13 35139390 35139918 -66733251 - MLT1F LTR MaLR -6 536 1 483 285 85 18 chr13 35139920 35140085 -66733084 + MIR SINE MIR 87 262 0 718 310 56 40 chr13 35140592 35140915 -66732254 - L2 LINE L2 -1 3312 2985 1371 193 0 12 chr13 35141476 35141735 -66731434 + AluJb SINE Alu 40 295 -17 455 262 8 33 chr13 35141745 35141867 -66731302 - MIR3 SINE MIR -21 187 69 376 336 8 8 chr13 35142033 35142161 -66731008 - L2 LINE L2 -973 2341 2214 451 236 66 38 chr13 35142162 35142308 -66730861 - MIR SINE MIR -58 150 20 351 0 0 0 chr13 35143153 35143192 -66729977 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 1910 132 22 0 chr13 35143192 35143464 -66729705 - AluSg SINE Alu -32 278 1 281 270 114 93 chr13 35143507 35143874 -66729295 + L2 LINE L2 1967 2341 -973 260 318 184 20 chr13 35144349 35144669 -66728500 + L2 LINE L2 2473 2739 -533 1458 196 43 4 chr13 35144669 35144945 -66728224 - AluJo SINE Alu -21 291 5 260 318 184 20 chr13 35144945 35145102 -66728067 + L2 LINE L2 2739 3055 -217 1987 167 23 3 chr13 35145185 35145532 -66727637 - MER47A DNA MER2_type -12 354 1 319 307 21 107 chr13 35145562 35145702 -66727467 + L2 LINE L2 3133 3260 -12 250 314 116 8 chr13 35146425 35146543 -66726626 + MIR SINE MIR 23 151 -65 720 265 115 99 chr13 35147035 35147711 -66725458 + HAL1 LINE L1 1117 1803 -704 1256 281 51 8 chr13 35148007 35148398 -66724771 - LTR16A1 LTR ERVL 0 457 50 407 263 11 56 chr13 35148731 35148910 -66724259 + HAL1b LINE L1 746 916 -432 566 289 30 42 chr13 35149028 35149291 -66723878 + HAL1 LINE L1 2246 2505 -2 186 262 90 57 chr13 35149293 35149415 -66723754 + MIR SINE MIR 137 262 0 267 338 50 88 chr13 35149887 35150047 -66723122 + L2 LINE L2 3109 3262 -10 393 102 0 0 chr13 35150047 35150106 -66723063 + (TGGA)n Simple_repeat Simple_repeat 4 62 0 306 231 33 33 chr13 35150315 35150406 -66722763 + MIR SINE MIR 22 112 -150 265 275 150 25 chr13 35150492 35150612 -66722557 + MIR SINE MIR 128 262 0 211 320 200 0 chr13 35150648 35150748 -66722421 - L2 LINE L2 -21 3251 3132 294 313 95 0 chr13 35153382 35153488 -66719681 + MIR SINE MIR 34 148 -66 864 193 47 6 chr13 35154276 35154447 -66718722 - MER5B DNA MER1_type 0 178 1 21 36 0 0 chr13 35154949 35154977 -66718192 + AT_rich Low_complexity Low_complexity 1 28 0 386 300 255 8 chr13 35155773 35156040 -66717129 + L2 LINE L2 2940 3272 0 220 299 11 11 chr13 35156104 35156191 -66716978 + A-rich Low_complexity Low_complexity 4 90 0 207 0 0 0 chr13 35156980 35157003 -66716166 + (CA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr13 35157138 35157161 -66716008 + AT_rich Low_complexity Low_complexity 1 23 0 888 252 64 33 chr13 35157231 35157560 -66715609 + MLT1J1 LTR MaLR 86 424 -22 300 216 11 45 chr13 35157737 35157825 -66715344 - L1ME4a LINE L1 -226 5895 5811 197 306 0 48 chr13 35157923 35157985 -66715184 + MER5A DNA MER1_type 1 59 -130 331 278 148 0 chr13 35158241 35158403 -66714766 - MLT1J LTR MaLR -317 194 9 228 292 225 0 chr13 35158475 35158595 -66714574 + MIR SINE MIR 54 200 -62 990 229 52 4 chr13 35158731 35158962 -66714207 + MIR SINE MIR 15 256 -6 3269 221 84 13 chr13 35159957 35160816 -66712353 - L1MC4a LINE L1 -1 7807 6888 2274 97 7 3 chr13 35161995 35162294 -66710875 - AluSx SINE Alu -12 300 1 262 261 22 33 chr13 35162892 35162984 -66710185 + L1MDa LINE L1 5 95 -6445 283 250 0 0 chr13 35163267 35163335 -66709834 - MIR SINE MIR 0 262 195 725 232 0 0 chr13 35163352 35163477 -66709692 + FLAM_A SINE Alu 1 125 -8 2527 68 0 0 chr13 35163482 35163777 -66709392 + AluSg SINE Alu 1 295 -15 1065 241 14 0 chr13 35163817 35164037 -66709132 - MER58A DNA MER1_type 0 224 2 447 256 157 0 chr13 35164042 35164163 -66709006 - MIR SINE MIR -121 141 2 2688 167 59 2 chr13 35164304 35164782 -66708387 - MLT1D LTR MaLR 0 505 1 722 309 132 9 chr13 35165146 35165473 -66707696 - LTR16B LTR ERVL -3 461 95 1083 244 141 42 chr13 35166939 35167393 -66705776 - LTR33A LTR ERVL 0 523 25 2745 176 84 2 chr13 35167451 35167927 -66705242 + MLT2B2 LTR ERVL 1 515 0 1704 173 11 14 chr13 35168128 35168417 -66704752 - AluJo SINE Alu -24 288 6 26 0 0 0 chr13 35168688 35168714 -66704455 + AT_rich Low_complexity Low_complexity 1 26 0 532 125 0 0 chr13 35169627 35169707 -66703462 - MADE1 DNA Mariner 0 80 1 324 280 54 0 chr13 35169803 35169896 -66703273 - MIR SINE MIR -129 133 36 341 316 38 30 chr13 35170404 35170537 -66702632 + MER91A DNA MER1_type 40 173 -23 24 0 0 0 chr13 35170732 35170756 -66702413 + AT_rich Low_complexity Low_complexity 1 24 0 183 345 0 0 chr13 35171041 35171096 -66702073 - L2 LINE L2 -17 3255 3201 2350 67 10 13 chr13 35171186 35171486 -66701683 - AluY SINE Alu -12 299 1 1452 249 267 21 chr13 35172265 35173403 -66699766 - L2 LINE L2 -159 3154 1527 322 281 91 6 chr13 35173478 35173643 -66699526 - L1ME LINE L1 -684 5480 5296 1957 172 51 109 chr13 35173975 35174563 -66698606 + MLT2B3 LTR ERVL 1 554 0 562 275 95 5 chr13 35174596 35174818 -66698351 + L1MEc LINE L1 1579 1820 -4576 2393 62 13 0 chr13 35174980 35175284 -66697885 - AluY SINE Alu -3 308 1 496 215 79 34 chr13 35175374 35175551 -66697618 - LTR16B LTR ERVL -2 462 278 320 320 39 56 chr13 35175567 35175801 -66697368 - L2 LINE L2 -340 2974 2745 196 287 172 0 chr13 35175821 35175908 -66697261 - L2 LINE L2 -3 3269 3168 641 175 83 0 chr13 35176081 35176201 -66696968 + MER96 DNA MER1_type? 1 130 -45 1582 199 22 0 chr13 35176225 35176501 -66696668 - AluJb SINE Alu -30 282 1 3439 163 43 8 chr13 35176523 35176965 -66696204 - L1MB7 LINE L1 -3 6159 5649 583 74 0 12 chr13 35176965 35177046 -66696123 + MADE1 DNA Mariner 1 80 0 3439 163 43 8 chr13 35177046 35177327 -66695842 - L1MB7 LINE L1 -513 5649 5379 2227 221 132 34 chr13 35178853 35179560 -66693609 + LTR50 LTR ERVL 19 794 -1 6298 155 16 5 chr13 35179906 35181973 -66691196 - L1PB1 LINE L1 -1 6150 4063 495 349 66 31 chr13 35182057 35182315 -66690854 + ERVL LTR ERVL 352 618 -5146 351 352 13 44 chr13 35182437 35182660 -66690509 + ERVL LTR ERVL 775 988 -4776 2238 123 0 0 chr13 35182660 35182960 -66690209 - AluJb SINE Alu -10 302 3 351 352 13 44 chr13 35182960 35183034 -66690135 + ERVL LTR ERVL 988 1063 -4701 921 300 14 18 chr13 35183054 35183334 -66689835 + ERVL LTR ERVL 2921 3199 -2565 264 291 12 0 chr13 35183358 35183444 -66689725 + L1M4 LINE L1 3681 3767 -2379 374 252 56 9 chr13 35183460 35183567 -66689602 + L2 LINE L2 3196 3307 -6 343 233 31 83 chr13 35183570 35183763 -66689406 + L1M4 LINE L1 3791 3973 -2173 386 243 107 23 chr13 35183769 35183946 -66689223 + L1M4 LINE L1 4362 4553 -1593 189 0 0 0 chr13 35183946 35183967 -66689202 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 448 214 207 21 chr13 35184377 35184522 -66688647 - MIR SINE MIR 0 262 91 30 27 0 0 chr13 35184536 35184573 -66688596 + AT_rich Low_complexity Low_complexity 1 37 0 1300 264 48 50 chr13 35184607 35185070 -66688099 - MLT1C LTR MaLR 0 467 6 244 259 25 37 chr13 35185074 35185155 -66688014 - MIR SINE MIR -180 82 3 206 163 0 23 chr13 35185683 35185726 -66687443 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1725 173 7 20 chr13 35186424 35186725 -66686444 - AluJb SINE Alu -15 297 1 975 205 31 31 chr13 35187385 35187609 -66685560 + MER58A DNA MER1_type 1 224 0 327 293 81 77 chr13 35187794 35188091 -66685078 - L2 LINE L2 -843 2471 2174 25 0 0 0 chr13 35188476 35188501 -66684668 + AT_rich Low_complexity Low_complexity 1 25 0 3042 162 48 3 chr13 35188555 35189122 -66684047 - L1MD3 LINE L1 0 7995 7404 501 153 71 0 chr13 35189122 35189207 -66683962 - MLT1F1 LTR MaLR -442 125 35 819 226 15 0 chr13 35189218 35189417 -66683752 - L1MC3 LINE L1 -702 7083 6882 213 121 0 0 chr13 35189432 35189465 -66683704 + (TG)n Simple_repeat Simple_repeat 2 34 0 191 103 26 0 chr13 35190322 35190361 -66682808 + T-rich Low_complexity Low_complexity 2 41 0 863 194 37 46 chr13 35191404 35191620 -66681549 - MER58C DNA MER1_type 0 215 2 241 319 78 44 chr13 35192909 35193067 -66680102 + MIR SINE MIR 23 183 -79 281 269 13 87 chr13 35194488 35194637 -66678532 + MIR SINE MIR 75 212 -50 186 373 67 67 chr13 35194712 35194862 -66678307 - L2 LINE L2 0 3272 3123 23 0 0 0 chr13 35194863 35194886 -66678283 + AT_rich Low_complexity Low_complexity 1 23 0 1035 231 9 5 chr13 35195063 35195284 -66677885 - MER58A DNA MER1_type -2 222 1 372 329 13 20 chr13 35195339 35195488 -66677681 - MIR SINE MIR 0 262 115 333 324 140 16 chr13 35195689 35196195 -66676974 + L1M4 LINE L1 4274 4842 -1304 2386 84 3 0 chr13 35196472 35196780 -66676389 - AluSc SINE Alu 0 309 1 292 258 86 12 chr13 35196907 35197070 -66676099 + L1MC4a LINE L1 5199 5373 -773 404 326 130 33 chr13 35197100 35197431 -66675738 + L1MC4a LINE L1 5542 5907 -255 349 253 63 0 chr13 35197727 35197822 -66675347 - MER94 DNA DNA -6 128 28 235 271 12 35 chr13 35197829 35197914 -66675255 - L2 LINE L2 -1407 1907 1825 2408 84 0 7 chr13 35198186 35198495 -66674674 - AluSg SINE Alu -3 307 1 234 190 69 0 chr13 35199783 35199841 -66673328 + MER116 DNA Mariner 18 79 -1 842 84 0 0 chr13 35199941 35200048 -66673121 + U6 snRNA snRNA 1 107 0 2054 117 13 3 chr13 35200048 35200365 -66672804 + L1P LINE L1 2354 2673 -3473 1606 173 22 35 chr13 35200590 35200902 -66672267 + AluJo SINE Alu 1 308 -4 2095 248 214 20 chr13 35200943 35201788 -66671381 + L1MEc LINE L1 409 1509 -4887 2360 95 0 0 chr13 35201788 35202083 -66671086 - AluSc SINE Alu -14 295 1 2095 248 214 20 chr13 35202083 35202310 -66670859 + L1MEc LINE L1 1509 1690 -4706 873 166 40 0 chr13 35202419 35202570 -66670599 - MER47A DNA MER2_type -209 157 1 1259 200 92 19 chr13 35202630 35203015 -66670154 + L1M4 LINE L1 5011 5422 -743 714 213 0 7 chr13 35203039 35203194 -66669975 + L1MA10 LINE L1 6180 6333 -1 367 38 19 293 chr13 35203217 35203323 -66669846 + MADE1 DNA Mariner 1 77 -3 806 220 18 6 chr13 35203712 35203880 -66669289 + MER5A DNA MER1_type 15 184 -5 1141 200 86 40 chr13 35204721 35204949 -66668220 + L1MC5 LINE L1 7501 7756 -205 2284 88 3 3 chr13 35204949 35205246 -66667923 + AluSg SINE Alu 1 297 -13 1141 200 86 40 chr13 35205246 35205412 -66667757 + L1MC5 LINE L1 7756 7913 -48 648 143 20 0 chr13 35205560 35205658 -66667511 - FLAM_C SINE Alu -34 109 10 21 36 0 0 chr13 35205673 35205701 -66667468 + AT_rich Low_complexity Low_complexity 1 28 0 1885 172 21 0 chr13 35206795 35207132 -66666037 - MER2 DNA MER2_type 0 344 1 2131 123 0 3 chr13 35207232 35207534 -66665635 + AluSq SINE Alu 1 301 -12 1362 225 35 24 chr13 35207871 35208240 -66664929 + MLT1A2 LTR MaLR 1 373 -1 3087 193 7 37 chr13 35208243 35208735 -66664434 + MLT1A2-int LTR MaLR 3 471 -1264 2153 127 43 3 chr13 35208735 35209082 -66664087 + MER46B DNA MER2_type 1 236 0 3087 193 7 37 chr13 35209082 35209267 -66663902 + MLT1A2-int LTR MaLR 471 660 -1075 230 207 0 52 chr13 35209329 35209387 -66663782 + MLT1A2-int LTR MaLR 829 883 -488 400 277 0 0 chr13 35209417 35209511 -66663658 + MLT-int LTR MaLR 696 789 -946 * 2220 202 84 55 chr13 35209496 35210065 -66663104 + MLT1A2-int LTR MaLR 1150 1735 0 1403 204 23 67 chr13 35210068 35210456 -66662713 + MLT1A2 LTR MaLR 4 374 0 6189 194 26 12 chr13 35210457 35211411 -66661758 - L1 LINE L1 -912 5234 4294 228 35 0 0 chr13 35211411 35211440 -66661729 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 194 26 12 chr13 35211440 35211525 -66661644 - L1 LINE L1 -1852 4294 4212 7238 96 17 18 chr13 35211525 35212593 -66660576 + MER11C LTR ERVK 1 1067 -4 6189 194 26 12 chr13 35212593 35212882 -66660287 - L1 LINE L1 -1934 4212 3887 1179 251 42 26 chr13 35212906 35213289 -66659880 - L1ME3A LINE L1 -14 6156 5768 418 231 109 30 chr13 35213344 35213515 -66659654 - L1ME3A LINE L1 -536 5626 5471 2071 136 3 0 chr13 35213525 35213819 -66659350 - AluSx SINE Alu -17 295 1 351 281 136 37 chr13 35213828 35214152 -66659017 - L1ME3A LINE L1 -787 5359 5004 311 188 47 47 chr13 35214198 35214283 -66658886 - L1MC4 LINE L1 -8 8034 7950 486 0 0 0 chr13 35214516 35214570 -66658599 + (CA)n Simple_repeat Simple_repeat 1 54 0 420 296 280 23 chr13 35215258 35215901 -66657268 + L2 LINE L2 1817 2624 -690 1036 196 0 68 chr13 35215901 35216197 -66656972 + L1 LINE L1 4144 4419 -1727 * 2050 132 13 20 chr13 35216189 35216568 -66656601 + L1MA5 LINE L1 5634 6011 -289 1769 107 0 4 chr13 35216817 35217051 -66656118 + AluSg SINE Alu 1 233 -77 1560 197 13 17 chr13 35217098 35217397 -66655772 + AluJb SINE Alu 1 298 -14 2215 95 7 0 chr13 35217397 35217691 -66655478 + AluSg1 SINE Alu 14 309 0 22 35 0 0 chr13 35217691 35217720 -66655449 + AT_rich Low_complexity Low_complexity 1 29 0 2261 112 7 7 chr13 35218577 35218882 -66654287 + AluSq SINE Alu 1 305 -8 1124 212 183 59 chr13 35218988 35219431 -66653738 + MLT1D LTR MaLR 1 498 -7 482 254 25 25 chr13 35220031 35220204 -66652965 + MER4E LTR ERV1 1 282 -590 * 1351 229 34 26 chr13 35220201 35220551 -66652618 + MER4D LTR ERV1 543 895 -8 549 258 101 56 chr13 35222138 35222305 -66650864 + LTR33A LTR ERVL 13 171 -352 2143 131 46 22 chr13 35222305 35222671 -66650498 - THE1C LTR MaLR 0 375 1 549 258 101 56 chr13 35222671 35222897 -66650272 + LTR33A LTR ERVL 171 462 -61 303 217 14 0 chr13 35224071 35224140 -66649029 + L2 LINE L2 3243 3312 -1 1013 156 7 7 chr13 35224836 35225109 -66648060 + MLT1A1 LTR MaLR 1 363 -2 218 282 0 42 chr13 35225160 35225231 -66647938 + MIR SINE MIR 169 236 -26 1268 146 190 4 chr13 35225661 35225929 -66647240 + MLT2C2 LTR ERVL 1 318 -146 612 92 244 17 chr13 35225948 35226067 -66647102 - MER4C LTR ERV1 -18 447 302 1090 153 159 52 chr13 35226140 35226448 -66646721 - MER4A LTR ERV1 -323 341 1 399 180 56 11 chr13 35226448 35226537 -66646632 + MLT2C1 LTR ERVL 248 340 -57 231 167 0 0 chr13 35226551 35226593 -66646576 + (TG)n Simple_repeat Simple_repeat 1 42 0 236 191 0 0 chr13 35226593 35226635 -66646534 + MLT2C2 LTR ERVL 422 463 -1 1890 296 108 26 chr13 35227294 35227442 -66645727 + L2 LINE L2 723 858 -2456 869 152 0 0 chr13 35227442 35227574 -66645595 - FLAM_C SINE Alu -1 132 1 1890 296 108 26 chr13 35227574 35228668 -66644501 + L2 LINE L2 858 2066 -1248 700 173 132 48 chr13 35228684 35228956 -66644213 - L1MC5 LINE L1 -32 7929 7635 445 289 162 53 chr13 35228964 35229046 -66644123 + L2 LINE L2 2057 2129 -1185 2270 71 4 4 chr13 35229046 35229357 -66643812 - AluY SINE Alu 0 311 1 445 289 162 53 chr13 35229357 35229668 -66643501 + L2 LINE L2 2129 2494 -820 575 116 0 0 chr13 35229671 35229757 -66643412 - MLT-int LTR MaLR -221 1514 1429 262 254 30 0 chr13 35229780 35229847 -66643322 + MLT1J LTR MaLR 382 450 -61 253 343 9 0 chr13 35229895 35230003 -66643166 + L2 LINE L2 2496 2604 -710 2206 169 98 7 chr13 35230013 35230432 -66642737 + MSTB2 LTR MaLR 1 457 0 1132 167 57 179 chr13 35230432 35230857 -66642312 - MLT1A1 LTR MaLR -1 364 1 736 286 157 38 chr13 35230858 35231486 -66641683 + L2 LINE L2 2607 3309 -4 1287 194 72 25 chr13 35231513 35231791 -66641378 - AluJo SINE Alu -21 291 1 217 288 0 0 chr13 35232020 35232086 -66641083 + L2 LINE L2 2873 2938 -334 680 258 36 10 chr13 35232383 35232577 -66640592 - MIR SINE MIR -38 224 26 308 194 0 15 chr13 35232608 35232675 -66640494 + MIR SINE MIR 191 256 -6 263 340 0 0 chr13 35232696 35232793 -66640376 + L2 LINE L2 2751 2847 -467 344 31 31 31 chr13 35232808 35232872 -66640297 + (TA)n Simple_repeat Simple_repeat 1 64 0 598 196 103 58 chr13 35232878 35233102 -66640067 - LOR1-int LTR ERV1 -6426 1694 1461 3833 172 27 56 chr13 35233114 35234011 -66639158 - LTR67-int LTR ERVL -4163 1180 310 1672 159 65 17 chr13 35234162 35234395 -66638774 - LTR64 LTR ERVK -29 529 309 2143 117 3 7 chr13 35234395 35234693 -66638476 - AluSx SINE Alu -15 297 1 1672 159 65 17 chr13 35234693 35234899 -66638270 - LTR64 LTR ERVK -249 309 5 463 237 50 14 chr13 35235160 35235299 -66637870 - LTR67 LTR ERVL -6 551 408 1951 172 23 48 chr13 35235727 35236123 -66637046 - MLT1B LTR MaLR -4 386 1 296 259 0 0 chr13 35236310 35236391 -66636778 + MER5A DNA MER1_type 26 106 -83 606 215 74 6 chr13 35236793 35236956 -66636213 + MIR SINE MIR 89 262 0 183 368 32 0 chr13 35238246 35238341 -66634828 + L2 LINE L2 2952 3049 -223 954 221 21 21 chr13 35238374 35238614 -66634555 + MLT2D LTR ERVL 6 245 -169 2690 119 19 67 chr13 35238668 35239289 -66633880 + MER4E LTR ERV1 1 765 -1 773 155 42 48 chr13 35239293 35239461 -66633708 + MLT2C1 LTR ERVL 231 397 0 339 247 40 40 chr13 35239544 35239694 -66633475 + L2 LINE L2 3164 3313 0 2456 95 0 0 chr13 35239747 35240051 -66633118 - AluSc SINE Alu -3 306 3 658 213 8 0 chr13 35240101 35240228 -66632941 + FRAM SINE Alu 1 128 -48 2530 81 32 46 chr13 35240271 35240591 -66632578 + THE1B LTR MaLR 1 317 -47 2044 143 0 7 chr13 35240591 35240891 -66632278 + AluSx SINE Alu 1 298 -14 2530 81 32 46 chr13 35240891 35240939 -66632230 + THE1B LTR MaLR 317 364 0 809 250 148 17 chr13 35240946 35241447 -66631722 + L2 LINE L2 2688 3239 -74 245 29 0 29 chr13 35241484 35241519 -66631650 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 184 279 0 0 chr13 35241716 35241759 -66631410 + L2 LINE L2 3252 3294 -19 21 36 0 0 chr13 35242076 35242104 -66631065 + AT_rich Low_complexity Low_complexity 1 28 0 3429 95 12 16 chr13 35242334 35242829 -66630340 - LTR15 LTR ERV1 0 493 1 963 169 79 0 chr13 35242888 35243066 -66630103 - LTR47A LTR ERVL 0 452 261 569 198 0 52 chr13 35243313 35243429 -66629740 - PABL_B-int LTR ERV1 -681 6077 5968 500 395 7 3 chr13 35243606 35243895 -66629274 - PABL_B-int LTR ERV1 -437 6685 6396 22 0 0 0 chr13 35244073 35244095 -66629074 + AT_rich Low_complexity Low_complexity 1 22 0 282 234 89 81 chr13 35244460 35244584 -66628585 - PABL_B-int LTR ERV1 -1365 5757 5633 578 346 65 48 chr13 35245268 35246591 -66626578 - HERVL32 LTR ERVL -1264 4079 2728 2840 86 11 0 chr13 35246876 35247247 -66625922 + THE1C LTR MaLR 1 375 0 1456 229 36 87 chr13 35247393 35247675 -66625494 - LTR34 LTR ERV1 -4 695 449 1694 188 16 10 chr13 35247675 35247979 -66625190 + AluJo SINE Alu 3 308 -4 1456 229 36 87 chr13 35247979 35248216 -66624953 - LTR34 LTR ERV1 -250 449 202 258 231 0 0 chr13 35248225 35248277 -66624892 - MER4A LTR ERV1 -477 187 136 453 194 37 19 chr13 35248361 35248469 -66624700 - MER4C LTR ERV1 -351 114 5 621 295 21 24 chr13 35248492 35248758 -66624411 - HERVL32 LTR ERVL -1095 2323 2033 2429 109 0 0 chr13 35248791 35249103 -66624066 + AluSx SINE Alu 1 312 0 1564 181 0 15 chr13 35249108 35249159 -66624010 + AluJb SINE Alu 1 51 -261 4397 80 14 4 chr13 35249159 35249722 -66623447 - MER61E LTR ERV1 0 569 1 1564 181 0 15 chr13 35249722 35249930 -66623239 + AluJb SINE Alu 51 256 -56 366 338 53 32 chr13 35249962 35250398 -66622771 - HERVL32 LTR ERVL -1321 2097 1666 825 169 107 23 chr13 35252084 35252261 -66620908 - LTR47A LTR ERVL 0 452 261 1247 168 35 10 chr13 35252457 35252660 -66620509 + MER77 LTR ERV1 1 208 -397 1941 219 27 22 chr13 35252736 35253142 -66620027 + MER77 LTR ERV1 196 603 -2 1873 197 63 40 chr13 35254180 35254475 -66618694 + L1M4 LINE L1 4846 5133 -1051 2291 112 3 0 chr13 35254475 35254779 -66618390 + AluSp SINE Alu 2 306 -7 1873 197 63 40 chr13 35254779 35255358 -66617811 + L1M4 LINE L1 5133 5732 -452 3160 116 49 61 chr13 35255362 35255949 -66617220 + MER39B LTR ERV1 6 585 -68 595 144 33 0 chr13 35255949 35256070 -66617099 - FLAM_A SINE Alu 0 149 26 1018 188 31 0 chr13 35256070 35256262 -66616907 + L1MB8 LINE L1 5369 5566 -618 263 259 19 0 chr13 35256294 35256348 -66616821 + LTR48B LTR ERV1 590 644 0 714 81 0 0 chr13 35256348 35256447 -66616722 + L1MB8 LINE L1 5730 5828 -350 * 21441 99 25 38 chr13 35256443 35261885 -66611284 + L1MA3 LINE L1 1 5513 -2211 2086 147 0 0 chr13 35261885 35262185 -66610984 + AluSx SINE Alu 1 300 -12 21441 99 25 38 chr13 35262185 35263608 -66609561 + L1MA3 LINE L1 5513 7072 -652 2298 105 10 0 chr13 35263608 35263903 -66609266 - AluSq SINE Alu -15 298 1 21441 99 25 38 chr13 35263903 35264548 -66608621 + L1MA3 LINE L1 7072 7724 0 1483 164 94 30 chr13 35264558 35264887 -66608282 + L1MB8 LINE L1 5813 6162 -16 1490 191 4 8 chr13 35265091 35265347 -66607822 + ERVL LTR ERVL 1825 2079 -3685 1969 179 121 14 chr13 35265350 35265763 -66607406 + MLT2B1 LTR ERVL 4 460 -60 426 108 0 0 chr13 35265768 35265842 -66607327 + (TC)n Simple_repeat Simple_repeat 2 75 0 904 128 17 0 chr13 35265854 35266003 -66607166 + ERVL LTR ERVL 2043 2196 -3289 1029 123 0 109 chr13 35266344 35266555 -66606614 - MER5A DNA MER1_type -1 188 1 508 258 113 20 chr13 35266757 35267005 -66606164 + L2 LINE L2 3043 3313 0 556 192 0 0 chr13 35267234 35267333 -66605836 + AluJ/FLAM SINE Alu 2 100 -212 973 133 0 0 chr13 35267336 35267471 -66605698 + AluJo/FRAM SINE Alu 167 301 -11 613 183 17 0 chr13 35268564 35268684 -66604485 + L2 LINE L2 3192 3313 0 1935 199 82 23 chr13 35269176 35269774 -66603395 - MER39 LTR ERV1 0 707 1 5059 147 63 1 chr13 35269823 35270600 -66602569 - LTR1B LTR ERV1 0 826 2 497 202 0 0 chr13 35270725 35270809 -66602360 + LTR8 LTR ERV1 608 691 0 702 249 64 49 chr13 35270818 35271083 -66602086 + HAL1 LINE L1 2158 2426 -81 3414 140 24 34 chr13 35271110 35271701 -66601468 - MER34C LTR ERV1 0 585 1 297 315 0 18 chr13 35271729 35271757 -66601412 + (TA)n Simple_repeat Simple_repeat 2 29 -81 4209 104 7 0 chr13 35271757 35272307 -66600862 - MER41A LTR ERV1 0 554 1 297 315 0 18 chr13 35272307 35272389 -66600780 + (TA)n Simple_repeat Simple_repeat 29 110 0 1123 188 68 34 chr13 35272693 35272959 -66600210 + ORSL DNA AcHobo 1 275 0 187 286 13 13 chr13 35273195 35273272 -66599897 - MIR SINE MIR -150 112 36 3587 71 0 11 chr13 35273435 35273888 -66599281 - LTR7 LTR ERV1 -2 448 1 2205 145 20 6 chr13 35273987 35274339 -66598830 - MLT1A1 LTR MaLR -8 357 1 258 169 169 0 chr13 35275309 35275368 -66597801 + Tigger2 DNA MER2_type 1 69 -2649 * 2431 123 74 42 chr13 35275358 35275790 -66597379 + Tigger2 DNA MER2_type 2273 2718 0 22 0 0 0 chr13 35275842 35275864 -66597305 + AT_rich Low_complexity Low_complexity 1 22 0 247 287 9 52 chr13 35275954 35276069 -66597100 + MIR SINE MIR 97 206 -56 3809 143 61 53 chr13 35276138 35276905 -66596264 + MER4D LTR ERV1 1 773 -130 4296 35 19 0 chr13 35276905 35277384 -66595785 + LTR2B LTR ERV1 1 488 -2 944 104 17 7 chr13 35277485 35277634 -66595535 + THE1C LTR MaLR 237 375 0 983 194 99 12 chr13 35277654 35277907 -66595262 - MLT1A2 LTR MaLR 0 374 100 3244 170 50 22 chr13 35278120 35278587 -66594582 + LTR26E LTR ERV1 3 492 -130 2184 112 7 0 chr13 35278587 35278882 -66594287 - AluSc SINE Alu -12 297 1 3244 170 50 22 chr13 35278882 35279015 -66594154 + LTR26E LTR ERV1 492 620 -2 3604 146 70 66 chr13 35279457 35280181 -66592988 - LTR8A LTR ERV1 0 727 1 216 0 0 0 chr13 35280228 35280252 -66592917 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1353 119 5 15 chr13 35280375 35280576 -66592593 - AluSq SINE Alu -114 199 1 1668 181 10 23 chr13 35280576 35280879 -66592290 - AluJb SINE Alu -13 299 1 850 183 80 0 chr13 35282050 35282225 -66590944 - MER53 DNA DNA 0 189 1 2036 148 0 3 chr13 35282735 35283032 -66590137 + AluSx SINE Alu 1 296 -16 891 223 6 0 chr13 35283033 35283199 -66589970 + AluJb SINE Alu 132 298 -14 562 66 0 13 chr13 35283606 35283682 -66589487 - MADE1 DNA Mariner 0 80 6 4464 188 59 17 chr13 35284077 35284905 -66588264 + MER21B LTR ERV1 1 863 0 192 280 0 40 chr13 35285086 35285136 -66588033 - L2 LINE L2 -25 3288 3241 2033 135 3 7 chr13 35285240 35285543 -66587626 + AluSx SINE Alu 1 302 -10 377 229 57 57 chr13 35286213 35286388 -66586781 + Charlie2 DNA MER1_type 94 268 -2514 2161 88 4 0 chr13 35286388 35286662 -66586507 + AluSp SINE Alu 25 299 -14 1326 134 9 209 chr13 35286877 35287302 -66585867 + THE1A LTR MaLR 1 340 -15 538 219 0 41 chr13 35287323 35287446 -66585723 + Charlie2a DNA MER1_type 1511 1628 -1234 578 207 36 7 chr13 35287461 35287601 -66585568 + Charlie2a DNA MER1_type 2719 2862 0 1937 64 0 0 chr13 35287806 35288040 -66585129 - L1MA2 LINE L1 0 6304 6071 242 283 0 124 chr13 35288128 35288241 -66584928 + L2 LINE L2 3169 3267 -5 187 214 79 67 chr13 35289038 35289127 -66584042 - MIR SINE MIR -170 92 3 1701 189 34 99 chr13 35289211 35289568 -66583601 + LTR56 LTR ERV1 1 321 -124 1948 168 0 0 chr13 35289568 35289866 -66583303 + AluJo SINE Alu 14 311 -1 1701 189 34 99 chr13 35289866 35289984 -66583185 + LTR56 LTR ERV1 321 445 0 354 318 101 61 chr13 35290951 35291149 -66582020 - L2 LINE L2 0 3272 3067 1687 230 47 12 chr13 35291166 35291574 -66581595 - LTR40c LTR ERVL 0 465 44 232 273 26 26 chr13 35291895 35291972 -66581197 + MIR SINE MIR 88 164 -98 315 104 0 0 chr13 35292044 35292092 -66581077 + (CAT)n Simple_repeat Simple_repeat 1 48 0 2285 110 0 0 chr13 35292430 35292730 -66580439 + AluY SINE Alu 3 302 -9 289 167 0 0 chr13 35292765 35292807 -66580362 - AluSg/x SINE Alu -49 251 210 * 757 211 199 23 chr13 35292804 35293065 -66580104 - MER69 DNA AcHobo -815 411 105 2257 217 166 15 chr13 35293114 35293781 -66579388 - MER69 DNA AcHobo -1734 792 25 189 74 0 0 chr13 35294030 35294057 -66579112 + (TG)n Simple_repeat Simple_repeat 1 27 0 284 202 250 0 chr13 35294476 35294580 -66578589 - MIR SINE MIR -10 252 123 579 107 12 0 chr13 35295045 35295129 -66578040 + L1PB3 LINE L1 6064 6148 -6 1698 167 0 7 chr13 35295156 35295432 -66577737 - AluJb SINE Alu -17 295 22 22 0 0 0 chr13 35295432 35295454 -66577715 + AT_rich Low_complexity Low_complexity 1 22 0 2288 102 0 7 chr13 35295470 35295775 -66577394 + AluSx SINE Alu 1 303 -9 369 254 69 8 chr13 35295792 35295922 -66577247 - L1ME4a LINE L1 -50 6071 5934 22 0 0 0 chr13 35296614 35296636 -66576533 + AT_rich Low_complexity Low_complexity 1 22 0 1636 185 7 7 chr13 35296795 35297092 -66576077 - AluJo SINE Alu 0 312 16 197 294 22 65 chr13 35297382 35297474 -66575695 + MER5A DNA MER1_type 22 109 -80 301 235 39 39 chr13 35297523 35297625 -66575544 + MIR SINE MIR 48 149 -59 390 268 71 42 chr13 35297695 35297804 -66575365 + MIR SINE MIR 90 207 -55 2031 205 48 34 chr13 35297804 35298064 -66575105 - MLT1D LTR MaLR 0 505 233 183 42 0 0 chr13 35298064 35298088 -66575081 + (CACAT)n Simple_repeat Simple_repeat 5 28 0 2031 205 48 34 chr13 35298088 35298325 -66574844 - MLT1D LTR MaLR -272 233 1 390 268 71 42 chr13 35298325 35298383 -66574786 + MIR SINE MIR 207 262 0 211 229 83 0 chr13 35298761 35298809 -66574360 - L2 LINE L2 0 3313 3262 236 32 32 0 chr13 35299018 35299049 -66574120 + L2 LINE L2 3263 3294 -19 322 285 49 59 chr13 35299627 35299822 -66573347 - MIR SINE MIR -50 212 17 875 263 133 16 chr13 35300743 35301051 -66572118 + L1MC4 LINE L1 6542 6961 -923 1099 166 90 11 chr13 35301175 35301452 -66571717 - AluSp SINE Alu 0 303 5 208 234 0 0 chr13 35302461 35302508 -66570661 + (CA)n Simple_repeat Simple_repeat 1 47 0 1070 192 47 0 chr13 35302983 35303176 -66569993 - MER20 DNA MER1_type 0 219 18 21 0 0 0 chr13 35304018 35304039 -66569130 + AT_rich Low_complexity Low_complexity 1 21 0 390 282 0 27 chr13 35304258 35304369 -66568800 - MIR3 SINE MIR -21 187 79 2432 89 3 0 chr13 35304755 35305057 -66568112 - AluSx SINE Alu -9 303 1 26 0 0 0 chr13 35306275 35306301 -66566868 + AT_rich Low_complexity Low_complexity 1 26 0 1340 174 81 0 chr13 35307017 35307275 -66565894 - AluJo SINE Alu -20 292 14 5168 178 76 2 chr13 35307513 35308538 -66564631 - L1MD2 LINE L1 -2 6357 5257 1269 74 0 12 chr13 35308659 35308821 -66564348 - AluSc SINE Alu -149 160 1 323 222 38 113 chr13 35308825 35309010 -66564159 - L1MD2 LINE L1 -1103 5043 4873 4656 223 42 20 chr13 35309020 35310367 -66562802 - L1MD2 LINE L1 -2217 3929 2553 449 316 24 11 chr13 35310878 35311226 -66561943 + L1MEc LINE L1 1319 1712 -864 300 244 35 12 chr13 35311544 35311630 -66561539 - MLT1H LTR MaLR -4 545 458 385 221 222 59 chr13 35311737 35312051 -66561118 - MLT1H LTR MaLR -192 403 39 263 299 65 30 chr13 35312257 35312628 -66560541 + L1MEc LINE L1 2179 2562 -3653 913 78 23 0 chr13 35312844 35312972 -66560197 + L1MA5 LINE L1 6168 6298 -2 513 205 71 104 chr13 35312974 35313275 -66559894 + L1MEc LINE L1 3841 4136 -2079 2249 80 42 0 chr13 35313498 35313786 -66559383 + AluY SINE Alu 1 300 -11 1704 238 23 10 chr13 35313847 35314233 -66558936 - MLT1J LTR MaLR -120 391 1 7106 175 162 30 chr13 35314311 35315839 -66557330 - MER52A LTR ERV1 0 1755 26 24 24 0 24 chr13 35316537 35316567 -66556602 + AT_rich Low_complexity Low_complexity 1 31 -10 2007 145 0 3 chr13 35316567 35316856 -66556313 - AluSx SINE Alu -24 288 1 24 24 0 24 chr13 35316856 35316867 -66556302 + AT_rich Low_complexity Low_complexity 31 41 0 24 0 0 0 chr13 35316928 35316952 -66556217 + AT_rich Low_complexity Low_complexity 1 24 0 1618 160 71 11 chr13 35317017 35317299 -66555870 - AluJo SINE Alu -13 299 1 258 171 55 226 chr13 35317921 35318120 -66555049 - MER112 DNA MER1_type 0 260 96 462 75 0 0 chr13 35318124 35318191 -66554978 + (TA)n Simple_repeat Simple_repeat 1 67 0 446 240 187 35 chr13 35318195 35318478 -66554691 - L1M4 LINE L1 -811 5335 5010 397 271 226 6 chr13 35319020 35319197 -66553972 + MIR SINE MIR 21 236 -26 209 333 0 0 chr13 35319887 35319944 -66553225 + CT-rich Low_complexity Low_complexity 3 59 0 27 0 0 0 chr13 35320873 35320900 -66552269 + AT_rich Low_complexity Low_complexity 1 27 0 840 261 104 24 chr13 35322024 35322400 -66550769 - Tigger8 DNA MER2_type -164 502 97 1435 108 50 67 chr13 35323429 35323669 -66549500 - MER46A DNA MER2_type 0 236 1 555 236 42 14 chr13 35324424 35324568 -66548601 + MIR SINE MIR 48 195 -67 24 0 0 0 chr13 35324912 35324936 -66548233 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr13 35325067 35325091 -66548078 + (TA)n Simple_repeat Simple_repeat 2 25 0 230 284 0 54 chr13 35325248 35325322 -66547847 + MIR SINE MIR 20 89 -119 1626 218 102 14 chr13 35325355 35325778 -66547391 - MLT1C LTR MaLR -2 465 6 1834 177 134 17 chr13 35326831 35327249 -66545920 + MLT1C LTR MaLR 1 467 0 255 31 0 0 chr13 35327443 35327475 -66545694 + (TC)n Simple_repeat Simple_repeat 2 33 0 256 268 114 57 chr13 35328584 35328707 -66544462 + MIR3 SINE MIR 72 201 -7 2703 170 78 0 chr13 35329079 35329543 -66543626 + Tigger7 DNA MER2_type 1 500 -233 969 137 160 0 chr13 35329542 35329717 -66543452 + Tigger7 DNA MER2_type 2284 2486 -1 * 257 348 26 0 chr13 35329720 35329835 -66543334 + L1MEd LINE L1 716 833 -5286 368 169 67 0 chr13 35330157 35330246 -66542923 + L1ME3A LINE L1 5857 5951 -211 355 261 59 26 chr13 35330263 35330416 -66542753 + L1ME3A LINE L1 6013 6170 0 210 277 0 0 chr13 35330440 35330487 -66542682 - MIR SINE MIR -64 144 98 454 207 164 92 chr13 35332110 35332536 -66540633 + L1ME4a LINE L1 5517 5973 -148 257 118 132 15 chr13 35332556 35332624 -66540545 + L1ME4a LINE L1 6046 6121 0 22 0 0 0 chr13 35333821 35333843 -66539326 + AT_rich Low_complexity Low_complexity 1 22 0 1850 166 20 0 chr13 35334349 35334645 -66538524 - AluJb SINE Alu -10 302 1 2156 98 39 0 chr13 35334996 35335281 -66537888 + AluSx SINE Alu 1 296 -16 232 210 0 160 chr13 35338496 35338596 -66534573 - MIR SINE MIR -131 131 48 204 135 0 0 chr13 35338624 35338661 -66534508 + (A)n Simple_repeat Simple_repeat 1 37 0 226 312 192 40 chr13 35339208 35339702 -66533467 - L2 LINE L2 -339 2975 2407 1943 141 0 33 chr13 35339844 35340148 -66533021 + AluJb SINE Alu 1 294 -18 262 293 8 49 chr13 35341088 35341211 -66531958 - MLT1K LTR MaLR -6 582 465 202 177 16 16 chr13 35341226 35341288 -66531881 + CT-rich Low_complexity Low_complexity 1 62 0 459 267 79 92 chr13 35341288 35341580 -66531589 - MLT1K LTR MaLR -158 430 143 1216 206 111 49 chr13 35341604 35341948 -66531221 - MLT1A1 LTR MaLR 0 365 1 457 278 94 17 chr13 35342344 35342524 -66530645 - L1MC/D LINE L1 -2159 5649 5456 1316 158 48 90 chr13 35343182 35343492 -66529677 - AluJo SINE Alu -15 297 1 2005 145 7 0 chr13 35343496 35343792 -66529377 - AluSx SINE Alu -12 300 3 510 241 194 24 chr13 35344196 35344393 -66528776 + MIR SINE MIR 36 261 -1 185 222 0 67 chr13 35344403 35344448 -66528721 + MIR SINE MIR 215 256 -6 467 264 8 8 chr13 35347957 35348078 -66525091 - LTR28 LTR ERV1 0 1020 900 1609 216 84 121 chr13 35348118 35348938 -66524231 - LTR28 LTR ERV1 -39 981 1 1342 230 37 74 chr13 35349070 35349527 -66523642 + L1MC5 LINE L1 6928 7367 -594 726 99 0 187 chr13 35349554 35349626 -66523543 - MER57A LTR ERV1 -264 139 116 2901 83 0 0 chr13 35349626 35349988 -66523181 - L1PA7 LINE L1 0 6154 5793 726 99 0 187 chr13 35349988 35350086 -66523083 - MER57A LTR ERV1 -287 116 1 1669 91 5 0 chr13 35350086 35350306 -66522863 - MER4B LTR ERV1 -389 221 1 321 352 6 19 chr13 35350425 35350587 -66522582 - L1M4 LINE L1 -2258 3888 3729 199 288 14 27 chr13 35350678 35350751 -66522418 - MIR3 SINE MIR -52 156 85 1467 188 40 24 chr13 35350796 35350976 -66522193 - AluJo SINE Alu -9 303 115 477 0 0 0 chr13 35350976 35351029 -66522140 + (TG)n Simple_repeat Simple_repeat 2 54 0 1467 188 40 24 chr13 35351029 35351146 -66522023 - AluJo SINE Alu -197 115 1 190 321 18 73 chr13 35351166 35351331 -66521838 + L2 LINE L2 2509 2664 -650 411 312 96 0 chr13 35351475 35351600 -66521569 + MIR3 SINE MIR 10 146 -62 3603 121 61 113 chr13 35351631 35352398 -66520771 - MER4E LTR ERV1 0 779 53 1390 143 0 0 chr13 35352398 35352607 -66520562 + AluSg/x SINE Alu 94 302 -10 2441 159 72 13 chr13 35352640 35353099 -66520070 - L1MA8 LINE L1 0 6291 5806 2979 142 43 2 chr13 35353100 35353985 -66519184 + L1M2 LINE L1 4853 5769 -522 1412 116 0 0 chr13 35354147 35354337 -66518832 - AluSq SINE Alu -123 190 1 208 290 108 32 chr13 35354610 35354703 -66518466 - MIR SINE MIR -78 130 31 2028 267 79 38 chr13 35355125 35355479 -66517690 - L2 LINE L2 -1106 2208 1870 2044 163 0 0 chr13 35355479 35355779 -66517390 + AluSx SINE Alu 1 300 -12 2028 267 79 38 chr13 35355779 35356161 -66517008 - L2 LINE L2 -1444 1870 1442 370 258 225 0 chr13 35356583 35356703 -66516466 + MIR SINE MIR 102 248 -14 249 261 34 0 chr13 35356779 35356867 -66516302 + L1MD3 LINE L1 7881 7971 -24 199 240 100 0 chr13 35357113 35357163 -66516006 - L2 LINE L2 -2918 396 342 432 308 125 44 chr13 35359380 35359701 -66513468 + L2 LINE L2 2859 3205 -108 651 249 103 28 chr13 35359784 35360037 -66513132 - L2 LINE L2 0 3313 3042 1541 159 26 55 chr13 35360835 35361143 -66512026 + AluJb SINE Alu 1 299 -13 216 139 116 0 chr13 35362924 35362967 -66510202 + L2 LINE L2 3262 3309 -4 897 253 88 5 chr13 35363394 35363687 -66509482 - L1ME2 LINE L1 -29 6135 5818 1822 174 83 60 chr13 35363819 35364073 -66509096 - MLT1C LTR MaLR -19 448 178 2320 77 0 3 chr13 35364073 35364359 -66508810 - AluSg SINE Alu -21 289 5 1822 174 83 60 chr13 35364359 35364540 -66508629 - MLT1C LTR MaLR -289 178 3 243 0 0 0 chr13 35365471 35365498 -66507671 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 288 0 0 0 chr13 35365497 35365529 -66507640 + (TG)n Simple_repeat Simple_repeat 2 33 0 547 296 110 19 chr13 35365603 35365897 -66507272 - L2 LINE L2 -690 2624 2299 2487 64 3 0 chr13 35365897 35366192 -66506977 - AluSp SINE Alu -17 296 1 547 296 110 19 chr13 35366192 35366205 -66506964 - L2 LINE L2 -1015 2299 2289 823 224 51 31 chr13 35366212 35366669 -66506500 - MER115 DNA AcHobo -2 691 140 989 285 133 21 chr13 35367285 35367758 -66505411 - L2 LINE L2 -1061 2253 1728 476 130 0 0 chr13 35367777 35367846 -66505323 + (TCCCC)n Simple_repeat Simple_repeat 3 71 0 186 43 0 0 chr13 35367991 35368014 -66505155 + (TCCCC)n Simple_repeat Simple_repeat 2 24 0 316 56 56 0 chr13 35368024 35368078 -66505091 + T-rich Low_complexity Low_complexity 1 57 0 181 239 75 0 chr13 35368093 35368160 -66505009 - L2 LINE L2 -1633 1681 1610 25 0 0 0 chr13 35368677 35368702 -66504467 + AT_rich Low_complexity Low_complexity 1 25 0 436 281 179 23 chr13 35368912 35369347 -66503822 + L1ME4a LINE L1 5318 5820 -301 495 155 155 27 chr13 35369425 35369573 -66503596 + L1ME4a LINE L1 5955 6121 0 242 191 0 16 chr13 35369706 35369769 -66503400 - L1ME4a LINE L1 -1 6120 6059 535 259 25 43 chr13 35370154 35370316 -66502853 + L2 LINE L2 3152 3310 -3 600 279 80 35 chr13 35370553 35370779 -66502390 - MIR SINE MIR -26 236 1 1000 245 64 50 chr13 35370807 35371243 -66501926 - L2 LINE L2 0 3313 2872 426 96 24 12 chr13 35371377 35371453 -66501716 + (GA)n Simple_repeat Simple_repeat 1 80 -4 243 0 0 0 chr13 35371453 35371480 -66501689 + (TG)n Simple_repeat Simple_repeat 1 27 0 426 96 24 12 chr13 35371480 35371486 -66501683 + (GA)n Simple_repeat Simple_repeat 80 84 0 2760 286 157 5 chr13 35371486 35371509 -66501660 - L2 LINE L2 -650 2664 2646 315 0 0 0 chr13 35371509 35371544 -66501625 + (TG)n Simple_repeat Simple_repeat 1 35 0 2760 286 157 5 chr13 35371544 35372754 -66500415 - L2 LINE L2 -668 2646 1243 313 257 81 14 chr13 35375018 35375092 -66498077 + L2 LINE L2 3171 3249 -23 6238 129 29 6 chr13 35376035 35377178 -66495991 - L1MC1 LINE L1 0 6333 5172 1177 213 75 57 chr13 35377189 35377407 -66495762 + MSTB2 LTR MaLR 1 214 -243 2083 112 3 7 chr13 35377407 35377693 -66495476 + AluSg SINE Alu 1 285 -25 1177 213 75 57 chr13 35377693 35377916 -66495253 + MSTB2 LTR MaLR 214 450 -7 2573 41 0 25 chr13 35378531 35378847 -66494322 - AluY SINE Alu -3 308 1 1842 149 24 17 chr13 35378847 35379142 -66494027 - AluSx SINE Alu -11 301 5 270 190 35 0 chr13 35379152 35379210 -66493959 + MER5B DNA MER1_type 119 178 0 2170 124 0 7 chr13 35380491 35380797 -66492372 + AluSc SINE Alu 1 304 -5 24 0 0 0 chr13 35381143 35381167 -66492002 + AT_rich Low_complexity Low_complexity 1 24 0 1182 234 104 3 chr13 35381731 35382030 -66491139 + L2 LINE L2 2970 3298 -15 30 0 0 0 chr13 35382991 35383021 -66490148 + AT_rich Low_complexity Low_complexity 1 30 0 556 171 86 34 chr13 35383033 35383150 -66490019 - FRAM SINE Alu -46 130 8 2078 120 3 0 chr13 35383163 35383481 -66489688 - AluSx SINE Alu 0 319 1 365 271 34 73 chr13 35384008 35384185 -66488984 - L1M4 LINE L1 -1645 4501 4332 27 62 0 0 chr13 35384239 35384287 -66488882 + AT_rich Low_complexity Low_complexity 1 48 0 1395 126 15 0 chr13 35384473 35384671 -66488498 - 7SLRNA srpRNA srpRNA -119 201 1 556 143 0 0 chr13 35385417 35385501 -66487668 + MSTB LTR MaLR 1 84 -342 297 192 0 0 chr13 35385502 35385554 -66487615 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385555 35385607 -66487562 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385608 35385660 -66487509 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385661 35385713 -66487456 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385714 35385766 -66487403 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385767 35385819 -66487350 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385820 35385872 -66487297 + MSTB LTR MaLR 33 84 -342 297 192 0 0 chr13 35385873 35385925 -66487244 + MSTB LTR MaLR 33 84 -342 303 173 0 0 chr13 35385926 35385978 -66487191 + MSTB LTR MaLR 33 84 -342 278 192 0 0 chr13 35385979 35386031 -66487138 + MSTB LTR MaLR 33 84 -342 278 192 0 0 chr13 35386032 35386084 -66487085 + MSTB LTR MaLR 33 84 -342 267 231 0 0 chr13 35386085 35386137 -66487032 + MSTB LTR MaLR 33 84 -342 2225 169 8 13 chr13 35386188 35386584 -66486585 + MSTB LTR MaLR 33 426 0 305 302 30 23 chr13 35387397 35387517 -66485652 + MIR SINE MIR 43 154 -66 253 306 122 10 chr13 35387562 35387660 -66485509 - MIR3 SINE MIR -13 195 87 585 193 8 8 chr13 35387665 35387784 -66485385 - FLAM_A SINE Alu -10 132 14 691 216 45 6 chr13 35387905 35388081 -66485088 + MER105 DNA DNA 2 184 -20 2191 131 3 3 chr13 35388286 35388598 -66484571 - AluSx SINE Alu 0 312 1 655 184 0 16 chr13 35389426 35389551 -66483618 - FAM SINE Alu -8 41 1 927 241 63 25 chr13 35389929 35390248 -66482921 - MER46C DNA MER2_type -7 331 1 894 316 95 34 chr13 35390315 35390695 -66482474 + L2 LINE L2 2884 3286 -27 524 319 215 5 chr13 35390977 35391370 -66481799 - L2 LINE L2 -243 3070 2588 410 267 26 0 chr13 35391502 35391618 -66481551 - L2 LINE L2 -1023 2291 2173 29 28 0 0 chr13 35393097 35393133 -66480036 + AT_rich Low_complexity Low_complexity 1 36 0 1212 112 93 0 chr13 35393714 35393929 -66479240 + L1MA4 LINE L1 6066 6300 0 231 221 174 0 chr13 35394071 35394157 -66479012 - Charlie7 DNA MER1_type -2510 102 2 1954 159 0 3 chr13 35394345 35394635 -66478534 - AluJo SINE Alu -18 294 6 22 0 0 0 chr13 35396347 35396369 -66476800 + AT_rich Low_complexity Low_complexity 1 22 0 399 209 70 76 chr13 35397376 35397534 -66475635 + Charlie2a DNA MER1_type 1507 1663 -1199 381 206 71 35 chr13 35397534 35397675 -66475494 + Charlie2a DNA MER1_type 2716 2861 -1 1339 231 67 71 chr13 35397832 35398369 -66474800 + MLT1F LTR MaLR 1 535 -7 1226 212 13 0 chr13 35398409 35398635 -66474534 + AluJo SINE Alu 1 229 -83 32 0 0 0 chr13 35398661 35398693 -66474476 + AT_rich Low_complexity Low_complexity 1 32 0 2303 230 85 51 chr13 35399132 35399897 -66473272 + MER21B LTR ERV1 19 809 -54 188 163 23 0 chr13 35399914 35399957 -66473212 + (TA)n Simple_repeat Simple_repeat 1 44 0 195 42 0 0 chr13 35401987 35402011 -66471158 + (T)n Simple_repeat Simple_repeat 1 24 0 40844 31 21 2 chr13 35402019 35408037 -66465132 - L1HS LINE L1 -7 6148 12 216 0 0 0 chr13 35408610 35408634 -66464535 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr13 35408738 35408763 -66464406 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr13 35409513 35409544 -66463625 + AT_rich Low_complexity Low_complexity 1 31 0 446 303 11 28 chr13 35410251 35410429 -66462740 + L1ME3A LINE L1 5987 6161 -9 4685 159 40 22 chr13 35410618 35411170 -66461999 + L1MB7 LINE L1 4765 5305 -879 1903 162 0 3 chr13 35411170 35411460 -66461709 + AluJb SINE Alu 3 291 -21 2346 110 0 0 chr13 35411462 35411772 -66461397 + AluSg SINE Alu 1 310 0 4685 159 40 22 chr13 35411772 35412590 -66460579 + L1MB7 LINE L1 5305 6175 -9 1832 167 11 3 chr13 35412625 35412912 -66460257 - AluJb SINE Alu -23 289 1 2043 100 14 4 chr13 35413321 35413700 -66459469 + AluSx SINE Alu 1 382 0 1117 176 59 0 chr13 35414054 35414258 -66458911 - MER21B LTR ERV1 -371 492 277 457 56 0 14 chr13 35414270 35414342 -66458827 - L1PB1 LINE L1 -12 6139 6069 21 0 0 0 chr13 35414587 35414608 -66458561 + AT_rich Low_complexity Low_complexity 1 21 0 895 190 27 0 chr13 35414912 35415096 -66458073 - MER5A DNA MER1_type 0 189 1 7418 169 63 37 chr13 35415402 35417058 -66456111 + MER52A LTR ERV1 37 1735 -20 741 209 15 0 chr13 35417086 35417220 -66455949 - MIR SINE MIR -109 153 18 970 284 166 41 chr13 35418233 35419100 -66454069 + L2 LINE L2 2264 3273 -40 536 274 146 24 chr13 35419346 35419558 -66453611 + MIR SINE MIR 2 239 -23 2817 103 86 0 chr13 35419566 35419994 -66453175 + MER4C LTR ERV1 1 465 0 980 302 50 9 chr13 35420840 35421420 -66451749 + L1M4 LINE L1 3074 3677 -2469 * 11885 131 42 33 chr13 35421416 35423679 -66449490 + L1M LINE L1 3089 5376 -803 279 223 75 21 chr13 35423742 35423836 -66449333 + HAL1 LINE L1 8 106 -2401 512 115 0 26 chr13 35423851 35423929 -66449240 - AluJo SINE Alu -21 291 216 * 606 135 0 39 chr13 35423922 35424026 -66449143 - AluJo SINE Alu -128 184 85 524 296 6 6 chr13 35424030 35424202 -66448967 + HAL1 LINE L1 144 315 -2192 676 270 135 0 chr13 35424212 35424464 -66448705 + HAL1 LINE L1 682 967 -1540 252 336 123 62 chr13 35424623 35424769 -66448400 + MIR SINE MIR 19 173 -89 555 269 166 9 chr13 35425845 35426068 -66447101 + MIR SINE MIR 5 262 0 1465 296 82 15 chr13 35426280 35427241 -66445928 + L2 LINE L2 2294 3313 0 2197 117 3 0 chr13 35427329 35427627 -66445542 + AluSx SINE Alu 1 299 -13 187 314 111 53 chr13 35427953 35428160 -66445009 - L2 LINE L2 -219 3053 2835 723 172 98 23 chr13 35428671 35428845 -66444324 + MER21A LTR ERV1 78 264 -667 3090 136 53 20 chr13 35428879 35429050 -66444119 + MER21A LTR ERV1 403 567 -364 2030 128 10 0 chr13 35429050 35429346 -66443823 - AluSx SINE Alu -11 301 3 3090 136 53 20 chr13 35429346 35429680 -66443489 + MER21A LTR ERV1 567 925 -6 313 215 62 0 chr13 35429795 35429860 -66443309 - MER96 DNA MER1_type? 0 175 107 265 265 60 0 chr13 35430023 35430106 -66443063 - MIR SINE MIR -56 206 119 23 0 0 0 chr13 35430643 35430666 -66442503 + AT_rich Low_complexity Low_complexity 1 23 0 1660 93 0 0 chr13 35431165 35431381 -66441788 + AluY SINE Alu 83 298 -13 1589 147 0 12 chr13 35432291 35432536 -66440633 + MLT1A1 LTR MaLR 116 357 -8 205 314 66 58 chr13 35433392 35433529 -66439640 - MER5B DNA MER1_type -17 161 24 208 254 0 0 chr13 35433577 35433632 -66439537 + (TA)n Simple_repeat Simple_repeat 2 56 0 618 332 137 4 chr13 35434253 35434479 -66438690 - MIR SINE MIR 0 262 7 355 277 53 0 chr13 35434660 35434754 -66438415 + MIR SINE MIR 149 247 -15 607 277 134 26 chr13 35434772 35435003 -66438166 - MIR SINE MIR -2 260 5 239 359 15 103 chr13 35435002 35435264 -66437905 - L2 LINE L2 -109 3163 2925 * 393 250 50 0 chr13 35435277 35435377 -66437792 + MIR SINE MIR 128 232 -30 204 273 0 0 chr13 35435527 35435571 -66437598 + L2 LINE L2 3262 3305 -8 1435 257 48 60 chr13 35435676 35436174 -66436995 + MLT1F LTR MaLR 1 492 -50 2278 102 0 3 chr13 35436930 35437223 -66435946 - AluSx SINE Alu -20 292 1 366 358 48 52 chr13 35437223 35437491 -66435678 + L2 LINE L2 2198 2464 -850 847 173 96 5 chr13 35437523 35437731 -66435438 - L1MDb LINE L1 -3998 2589 2363 * 3381 192 50 28 chr13 35437727 35438867 -66434302 + L1MD1 LINE L1 4856 6020 -222 396 312 40 7 chr13 35438937 35439114 -66434055 - L1MDb LINE L1 -5753 656 410 705 186 0 29 chr13 35439274 35439414 -66433755 - FLAM_C SINE Alu -7 136 1 21 0 0 0 chr13 35439447 35439468 -66433701 + AT_rich Low_complexity Low_complexity 1 21 0 842 146 0 0 chr13 35439555 35439678 -66433491 + FLAM_C SINE Alu 1 123 -10 23 33 0 0 chr13 35440248 35440278 -66432891 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 35440784 35440808 -66432361 + AT_rich Low_complexity Low_complexity 1 24 0 1166 238 104 3 chr13 35441372 35441671 -66431498 + L2 LINE L2 2970 3298 -15 30 0 0 0 chr13 35442632 35442662 -66430507 + AT_rich Low_complexity Low_complexity 1 30 0 521 179 86 34 chr13 35442674 35442791 -66430378 - FRAM SINE Alu -46 130 8 2114 113 3 0 chr13 35442801 35443121 -66430048 - AluSx SINE Alu 0 321 1 365 271 34 73 chr13 35443648 35443825 -66429344 - L1M4 LINE L1 -1645 4501 4332 27 62 0 0 chr13 35443879 35443927 -66429242 + AT_rich Low_complexity Low_complexity 1 48 0 1372 132 20 0 chr13 35444113 35444310 -66428859 - 7SLRNA srpRNA srpRNA -119 201 1 474 202 0 0 chr13 35445056 35445140 -66428029 + MSTB LTR MaLR 1 84 -342 227 269 0 0 chr13 35445141 35445193 -66427976 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445194 35445246 -66427923 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445247 35445299 -66427870 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445300 35445352 -66427817 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445353 35445405 -66427764 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445406 35445458 -66427711 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445459 35445511 -66427658 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445512 35445564 -66427605 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445565 35445617 -66427552 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445618 35445670 -66427499 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445671 35445723 -66427446 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445724 35445776 -66427393 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445777 35445829 -66427340 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445830 35445882 -66427287 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445883 35445935 -66427234 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445936 35445988 -66427181 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35445989 35446041 -66427128 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446042 35446094 -66427075 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446095 35446147 -66427022 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446148 35446200 -66426969 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446201 35446253 -66426916 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446254 35446306 -66426863 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446307 35446359 -66426810 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446360 35446412 -66426757 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446413 35446465 -66426704 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446466 35446518 -66426651 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446519 35446571 -66426598 + MSTB LTR MaLR 33 84 -342 227 269 0 0 chr13 35446572 35446624 -66426545 + MSTB LTR MaLR 33 84 -342 2286 177 8 13 chr13 35446625 35447021 -66426148 + MSTB LTR MaLR 33 426 0 309 302 30 23 chr13 35447822 35447942 -66425227 + MIR SINE MIR 43 154 -66 259 306 122 10 chr13 35447987 35448085 -66425084 - MIR3 SINE MIR -13 195 87 603 185 8 8 chr13 35448090 35448209 -66424960 - FLAM_A SINE Alu -10 132 14 745 216 45 6 chr13 35448330 35448506 -66424663 + MER105 DNA DNA 2 184 -20 2156 131 3 3 chr13 35448710 35449022 -66424147 - AluSx SINE Alu 0 312 1 863 226 0 11 chr13 35449852 35450029 -66423140 - FAM SINE Alu 0 175 1 680 80 0 0 chr13 35450430 35450530 -66422639 + AluSg/x SINE Alu 213 312 0 186 43 0 0 chr13 35450640 35450663 -66422506 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1493 197 42 0 chr13 35450670 35450934 -66422235 - AluJb SINE Alu -37 275 1 1117 216 14 0 chr13 35450976 35451194 -66421975 - AluJb SINE Alu -8 304 84 30945 108 20 56 chr13 35451274 35457640 -66415529 - L1PA7 LINE L1 -12 6142 10 1968 126 33 3 chr13 35458199 35458500 -66414669 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr13 35458590 35458612 -66414557 + AT_rich Low_complexity Low_complexity 1 22 0 2023 122 17 0 chr13 35459415 35459709 -66413460 - AluSx SINE Alu -13 299 1 33 73 0 0 chr13 35462699 35462767 -66410402 + AT_rich Low_complexity Low_complexity 1 68 0 1688 161 37 3 chr13 35463305 35463603 -66409566 - MER7A DNA MER2_type -40 306 1 2457 79 0 0 chr13 35463894 35464198 -66408971 + AluSc SINE Alu 1 304 -5 649 167 0 0 chr13 35464518 35464632 -66408537 + FRAM SINE Alu 63 176 0 25 65 0 0 chr13 35465467 35465513 -66407656 + AT_rich Low_complexity Low_complexity 1 46 0 238 339 62 8 chr13 35466723 35466853 -66406316 - MIR3 SINE MIR -21 187 51 189 0 0 0 chr13 35466853 35466874 -66406295 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 701 183 9 0 chr13 35466880 35466995 -66406174 - FLAM_A SINE Alu -17 116 1 1846 231 55 18 chr13 35467464 35467632 -66405537 + L1MC4a LINE L1 5508 5668 -2140 267 103 0 0 chr13 35467632 35467671 -66405498 + (CA)n Simple_repeat Simple_repeat 2 40 0 1846 231 55 18 chr13 35467671 35468083 -66405086 + L1MC4a LINE L1 5668 6156 -1652 638 213 69 6 chr13 35468085 35468245 -66404924 - MER58B DNA MER1_type -2 339 170 187 125 175 0 chr13 35468339 35468379 -66404790 + L2 LINE L2 3263 3309 -4 260 347 40 17 chr13 35468632 35468805 -66404364 - HAL1 LINE L1 -720 1787 1611 437 285 102 12 chr13 35468826 35468946 -66404223 - HAL1 LINE L1 -983 1524 1416 2052 123 7 3 chr13 35468946 35469239 -66403930 + AluSg SINE Alu 2 295 -15 437 285 102 12 chr13 35469239 35469374 -66403795 - HAL1 LINE L1 -1091 1416 1246 961 167 0 0 chr13 35469749 35469899 -66403270 - AluJb SINE Alu -11 301 152 922 151 84 39 chr13 35469971 35470150 -66403019 + MER5A DNA MER1_type 3 189 0 1716 156 20 17 chr13 35471094 35471396 -66401773 + AluJo SINE Alu 1 303 -9 323 187 220 11 chr13 35473008 35473099 -66400070 - MIR SINE MIR -70 192 83 343 232 53 21 chr13 35473103 35473198 -66399971 + MIR SINE MIR 95 192 -70 623 273 164 5 chr13 35473344 35473564 -66399605 + MIR SINE MIR 8 262 0 211 286 229 14 chr13 35475099 35475169 -66398000 + MIR SINE MIR 23 107 -155 28 0 0 0 chr13 35475207 35475235 -66397934 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 35475532 35475556 -66397613 + AT_rich Low_complexity Low_complexity 1 24 0 6929 64 4 0 chr13 35476118 35477799 -66395370 - L1PA7 LINE L1 0 6154 4468 13077 79 21 29 chr13 35477799 35479817 -66393352 - L1P3 LINE L1 -4417 2044 4 4318 224 25 23 chr13 35480195 35481322 -66391847 + L1MEc LINE L1 44 1172 -5224 2242 119 0 0 chr13 35481356 35481658 -66391511 + AluSx SINE Alu 1 302 -10 3057 218 42 46 chr13 35481667 35481847 -66391322 + L1MEc LINE L1 1541 1720 -4495 2315 92 0 7 chr13 35481847 35482151 -66391018 + AluSg SINE Alu 1 302 -8 3057 218 42 46 chr13 35482151 35482175 -66390994 + L1MEc LINE L1 1720 1743 -4472 649 188 8 0 chr13 35482175 35482292 -66390877 - FLAM_C SINE Alu -15 118 1 3057 218 42 46 chr13 35482292 35483123 -66390046 + L1MEc LINE L1 1743 2531 -3684 1549 188 31 3 chr13 35483598 35483886 -66389283 - AluJo SINE Alu -16 296 1 413 200 227 22 chr13 35484030 35484215 -66388954 + MLT1H1 LTR MaLR 326 548 -7 628 306 110 47 chr13 35484218 35484547 -66388622 + L2 LINE L2 1644 2022 -1292 2066 124 3 10 chr13 35484547 35484879 -66388290 - AluSx SINE Alu 0 312 3 628 306 110 47 chr13 35484879 35485085 -66388084 + L2 LINE L2 2022 2213 -1101 632 250 159 9 chr13 35485086 35485306 -66387863 + MIR SINE MIR 2 254 -8 536 271 76 34 chr13 35485324 35485560 -66387609 + L2 LINE L2 2244 2489 -825 705 136 37 37 chr13 35485875 35486037 -66387132 - Charlie1 DNA MER1_type 0 2761 2600 1274 162 16 76 chr13 35486038 35486353 -66386816 - L1MB8 LINE L1 -28 6150 5855 4282 173 75 22 chr13 35486441 35487388 -66385781 - Charlie1 DNA MER1_type -153 2608 1612 966 185 23 6 chr13 35487387 35487560 -66385609 + Tigger3(Golem) DNA MER2_type 2861 3036 0 * 21 36 0 0 chr13 35487588 35487616 -66385553 + AT_rich Low_complexity Low_complexity 1 28 0 982 160 16 41 chr13 35487636 35487830 -66385339 - AluJo SINE Alu -123 189 1 1481 246 84 21 chr13 35487872 35488302 -66384867 - L1ME LINE L1 -5417 653 197 290 293 93 21 chr13 35488474 35488614 -66384555 - L2 LINE L2 -564 2750 2601 205 300 17 0 chr13 35488837 35488897 -66384272 - L3b LINE CR1 -130 1453 1393 504 189 27 9 chr13 35489190 35489301 -66383868 + L1ME3A LINE L1 6044 6156 -14 190 291 105 23 chr13 35489757 35489843 -66383326 + L2 LINE L2 3220 3312 -1 6808 48 22 17 chr13 35490718 35492052 -66381117 + L1PA5 LINE L1 4810 6148 -6 23 97 0 0 chr13 35493598 35493670 -66379499 + AT_rich Low_complexity Low_complexity 1 72 0 2193 112 0 0 chr13 35493772 35494076 -66379093 - AluSc SINE Alu -5 304 1 716 191 0 8 chr13 35494222 35494353 -66378816 - FLAM_C SINE Alu -2 131 2 187 211 88 53 chr13 35494577 35494634 -66378535 - MIR SINE MIR -30 232 174 6438 137 58 21 chr13 35494859 35496045 -66377124 + Tigger3b DNA MER2_type 2 1231 0 351 288 102 8 chr13 35496199 35496317 -66376852 - MIR SINE MIR -127 135 7 2198 107 7 0 chr13 35497236 35497535 -66375634 - AluSx SINE Alu -9 303 3 200 132 26 0 chr13 35497719 35497757 -66375412 + (TTATA)n Simple_repeat Simple_repeat 5 43 0 1739 174 3 3 chr13 35497877 35498165 -66375004 + AluSq SINE Alu 1 288 -25 30 27 0 0 chr13 35498165 35498202 -66374967 + AT_rich Low_complexity Low_complexity 1 37 0 2444 117 0 3 chr13 35498567 35498917 -66374252 + L1PA16 LINE L1 5682 6030 -136 400 246 65 87 chr13 35499685 35500061 -66373108 + L1MEc LINE L1 1440 1743 -833 249 327 79 52 chr13 35501047 35501077 -66372092 + L2 LINE L2 1790 1818 -1496 2149 90 33 0 chr13 35501077 35501376 -66371793 - AluSx SINE Alu -3 309 1 249 327 79 52 chr13 35501376 35501634 -66371535 + L2 LINE L2 1818 2097 -1217 1957 150 36 27 chr13 35501634 35501968 -66371201 - MER1B DNA MER1_type 0 337 1 249 327 79 52 chr13 35501968 35502121 -66371048 + L2 LINE L2 2097 2244 -1070 272 188 0 0 chr13 35502388 35502436 -66370733 - MER5B DNA MER1_type -130 48 1 4521 171 49 1 chr13 35502727 35503516 -66369653 + MER21B LTR ERV1 1 827 -36 192 330 136 19 chr13 35503547 35503650 -66369519 + L2 LINE L2 2918 3032 -240 1016 318 87 43 chr13 35503731 35504560 -66368609 - L2 LINE L2 0 3313 2452 2311 85 0 0 chr13 35504738 35505031 -66368138 - AluSq SINE Alu -20 293 1 21 0 0 0 chr13 35505113 35505134 -66368035 + AT_rich Low_complexity Low_complexity 1 21 0 2370 86 3 0 chr13 35506617 35506920 -66366249 - AluSq SINE Alu -9 304 1 387 208 14 0 chr13 35507968 35508040 -66365129 + L2 LINE L2 3241 3313 0 406 186 0 43 chr13 35508918 35508988 -66364181 - Tigger2 DNA MER2_type -3 2715 2649 965 173 6 0 chr13 35508988 35509150 -66364019 - FAM SINE Alu -3 46 1 702 144 70 53 chr13 35509159 35509346 -66363823 - Tigger2 DNA MER2_type -78 2640 2451 1336 142 29 8 chr13 35509407 35509647 -66363522 - Tigger2 DNA MER2_type -2473 245 1 276 229 72 24 chr13 35509926 35510009 -66363160 + MIR3 SINE MIR 111 197 -11 1852 162 0 19 chr13 35510173 35510487 -66362682 - AluJo SINE Alu -4 308 1 27 49 0 0 chr13 35511380 35511421 -66361748 + AT_rich Low_complexity Low_complexity 1 41 0 2282 89 0 16 chr13 35511509 35511813 -66361356 + AluSg SINE Alu 1 299 -11 1634 195 96 54 chr13 35511845 35512405 -66360764 + L1MC5 LINE L1 7328 7911 -50 320 388 6 12 chr13 35513436 35513596 -66359573 + L2 LINE L2 3149 3307 -6 76 100 0 0 chr13 35514125 35514376 -66358793 + AT_rich Low_complexity Low_complexity 1 251 0 560 134 42 113 chr13 35515600 35515742 -66357427 + LTR8A LTR ERV1 596 727 0 395 342 32 26 chr13 35515785 35515940 -66357229 + L2 LINE L2 3117 3272 0 392 295 22 7 chr13 35516092 35516231 -66356938 - MER117 DNA MER1_type -53 144 4 2420 271 105 20 chr13 35516400 35517538 -66355631 + HAL1b LINE L1 4 1237 -111 16030 142 26 12 chr13 35517543 35520755 -66352414 - L1MA1 LINE L1 0 7721 4422 6342 167 0 6 chr13 35520755 35521780 -66351389 + L1PA14 LINE L1 4008 5037 -1124 2174 116 3 0 chr13 35521780 35522073 -66351096 + AluSx SINE Alu 1 294 -18 6342 167 0 6 chr13 35522073 35523158 -66350011 + L1PA14 LINE L1 5037 6144 -17 16030 142 26 12 chr13 35523158 35524351 -66348818 - L1MA1 LINE L1 -3299 4422 3248 306 187 122 93 chr13 35524359 35524466 -66348703 + HAL1b LINE L1 1232 1341 -7 22 0 0 0 chr13 35525134 35525156 -66348013 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 35526017 35526045 -66347124 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 35527083 35527111 -66346058 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 35527334 35527374 -66345795 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr13 35527626 35527646 -66345523 + (A)n Simple_repeat Simple_repeat 1 20 0 679 200 84 5 chr13 35528911 35529101 -66344068 - L1MC4 LINE L1 -1379 6663 6459 213 273 0 15 chr13 35531529 35531595 -66341574 + (TTCA)n Simple_repeat Simple_repeat 3 67 0 307 308 57 57 chr13 35531596 35531755 -66341414 + MIR SINE MIR 104 262 0 2791 207 44 19 chr13 35532120 35532824 -66340345 + L1ME1 LINE L1 5440 6161 -5 28 0 0 0 chr13 35532906 35532934 -66340235 + AT_rich Low_complexity Low_complexity 1 28 0 1573 216 67 22 chr13 35533388 35533836 -66339333 - L1M4 LINE L1 -935 5211 4744 27130 68 4 0 chr13 35533934 35537639 -66335530 + L1P LINE L1 13 3732 -2414 401 192 0 0 chr13 35538303 35538376 -66334793 + L1MA2 LINE L1 6232 6304 0 360 281 57 12 chr13 35538383 35538629 -66334540 + L1ME4a LINE L1 5677 5933 -188 243 282 86 17 chr13 35538635 35538752 -66334417 + L1ME4a LINE L1 5964 6088 -33 2519 133 32 48 chr13 35539288 35539392 -66333777 - L1MA9 LINE L1 0 6376 6272 1878 154 27 15 chr13 35539392 35539723 -66333446 + MER44D DNA MER2_type 5 609 0 2519 133 32 48 chr13 35539723 35539891 -66333278 - L1MA9 LINE L1 -104 6272 6103 1496 178 9 54 chr13 35539891 35540206 -66332963 - AluJo SINE Alu -11 301 1 2519 133 32 48 chr13 35540206 35540468 -66332701 - L1MA9 LINE L1 -273 6103 5850 280 196 0 0 chr13 35540469 35540515 -66332654 + Tigger5 DNA MER2_type 1 46 -2277 312 238 12 0 chr13 35540532 35540612 -66332557 + Tigger5 DNA MER2_type 2243 2323 0 1816 143 13 3 chr13 35540612 35540926 -66332243 - L1MA9 LINE L1 -529 5847 5531 1245 166 105 0 chr13 35540936 35541183 -66331986 - MSTC LTR MaLR -155 273 1 5914 193 48 7 chr13 35541184 35542599 -66330570 - L1MA9 LINE L1 -1974 4236 2764 328 185 148 0 chr13 35542611 35542692 -66330477 - L1MA9 LINE L1 -6045 96 4 21 57 0 0 chr13 35543322 35543357 -66329812 + AT_rich Low_complexity Low_complexity 1 35 0 184 215 31 46 chr13 35545996 35546061 -66327108 - L2 LINE L2 -1886 1428 1365 185 0 40 0 chr13 35546113 35546138 -66327031 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 675 304 80 28 chr13 35546264 35546550 -66326619 - L2 LINE L2 0 3313 3013 576 293 61 20 chr13 35546589 35546886 -66326283 + L1MC4a LINE L1 5592 5900 -1908 2237 100 9 3 chr13 35547174 35547503 -66325666 + L1PA13 LINE L1 5819 6149 -14 325 270 0 35 chr13 35547511 35547626 -66325543 + L1ME1 LINE L1 5784 5894 -272 4112 131 25 37 chr13 35547652 35548428 -66324741 + L1MA4 LINE L1 5534 6299 -1 4096 229 26 7 chr13 35548976 35550157 -66323012 + L1M4 LINE L1 3158 4361 -1785 1208 149 5 9 chr13 35550139 35550361 -66322808 + L1MA9 LINE L1 5721 5941 -371 * 1221 143 25 31 chr13 35550373 35550603 -66322566 + L1P5 LINE L1 5104 5340 -814 2187 116 0 0 chr13 35550603 35550905 -66322264 - AluSq SINE Alu -11 302 1 1221 143 25 31 chr13 35550905 35551055 -66322114 + L1P5 LINE L1 5340 5489 -665 23 33 0 0 chr13 35551073 35551103 -66322066 + GC_rich Low_complexity Low_complexity 1 30 0 384 175 68 0 chr13 35551126 35551226 -66321943 + L1MA9 LINE L1 5838 5943 -354 2197 97 3 0 chr13 35551627 35551927 -66321242 - AluSg SINE Alu -9 301 1 444 67 0 0 chr13 35555664 35555724 -66317445 + (TG)n Simple_repeat Simple_repeat 1 60 0 2065 95 13 0 chr13 35556420 35556726 -66316443 + L1P5 LINE L1 5478 5787 -367 3667 175 26 18 chr13 35556727 35557499 -66315670 + L1P LINE L1 3958 4735 -1411 373 263 22 15 chr13 35557504 35557641 -66315528 + L1MA9 LINE L1 6003 6140 -172 2125 86 0 4 chr13 35557657 35557926 -66315243 - AluSq SINE Alu -45 268 1 2878 207 51 53 chr13 35557949 35558396 -66314773 + L1ME4a LINE L1 4316 4762 -1384 2527 51 3 6 chr13 35558396 35558708 -66314461 + AluY SINE Alu 1 311 0 2878 207 51 53 chr13 35558708 35559207 -66313962 + L1ME4a LINE L1 4762 5260 -886 353 280 0 19 chr13 35559658 35559765 -66313404 + L1M4 LINE L1 3038 3142 -3004 402 283 51 29 chr13 35559921 35560197 -66312972 + L1MCc LINE L1 17 298 -6125 579 263 83 35 chr13 35560221 35560451 -66312718 + L1MCc LINE L1 3041 3294 -3647 2370 71 14 0 chr13 35560451 35560748 -66312421 + AluSg SINE Alu 1 301 -9 579 263 83 35 chr13 35560748 35560856 -66312313 + L1MCc LINE L1 3294 3395 -3546 1592 114 43 8 chr13 35560863 35561117 -66312052 + Tigger3(Golem) DNA MER2_type 2767 3029 0 349 309 43 15 chr13 35561242 35561411 -66311758 - MIR SINE MIR -69 139 2 21 0 0 0 chr13 35561580 35561601 -66311568 + AT_rich Low_complexity Low_complexity 1 21 0 437 333 119 0 chr13 35561889 35562066 -66311103 - MIR SINE MIR -49 213 16 483 226 71 131 chr13 35563151 35563562 -66309607 + L1ME4a LINE L1 5521 5906 -215 298 146 18 0 chr13 35563629 35563684 -66309485 + MIR SINE MIR 87 142 -120 2171 111 10 0 chr13 35563778 35564076 -66309093 - AluSx SINE Alu -11 301 1 1098 156 0 0 chr13 35564079 35564246 -66308923 - AluJb SINE Alu -11 301 135 2043 89 19 57 chr13 35564561 35564875 -66308294 - AluSx SINE Alu -10 302 1 354 232 72 40 chr13 35564887 35565012 -66308157 + L1ME4a LINE L1 5993 6121 0 399 288 72 40 chr13 35565743 35565993 -66307176 - MIR SINE MIR -3 259 2 1738 172 13 7 chr13 35566020 35566323 -66306846 - AluJo SINE Alu -7 305 1 765 168 0 8 chr13 35566326 35566457 -66306712 - FLAM_A SINE Alu -3 130 1 24 0 0 0 chr13 35567131 35567155 -66306014 + AT_rich Low_complexity Low_complexity 1 24 0 242 113 0 38 chr13 35568452 35568505 -66304664 + (CGG)n Simple_repeat Simple_repeat 2 52 0 181 243 27 0 chr13 35569375 35569412 -66303757 - L2 LINE L2 -24 3248 3211 * 310 235 60 179 chr13 35569379 35569477 -66303692 - MIR SINE MIR -23 239 184 1057 78 0 0 chr13 35569477 35569619 -66303550 - L1PA8 LINE L1 0 6172 6031 310 235 60 179 chr13 35569619 35569754 -66303415 - MIR SINE MIR -78 184 34 251 323 0 0 chr13 35570312 35570405 -66302764 + MLT1L LTR MaLR 162 254 -361 25 31 0 0 chr13 35570437 35570469 -66302700 + AT_rich Low_complexity Low_complexity 1 32 0 499 286 47 6 chr13 35621282 35621453 -66251716 - MIR SINE MIR -42 220 43 2207 106 0 0 chr13 35621682 35621986 -66251183 + AluSx SINE Alu 1 304 0 740 316 208 10 chr13 35623258 35623811 -66249358 - L2 LINE L2 0 3272 2613 419 337 3 3 chr13 35624919 35625216 -66247953 - AluSp SINE Alu -12 301 5 1633 135 15 8 chr13 35625546 35625805 -66247364 - AluSx SINE Alu -51 261 1 617 160 88 0 chr13 35625850 35625975 -66247194 + L1MC1 LINE L1 5483 5618 -726 1074 176 19 147 chr13 35625975 35626312 -66246857 - MLT1A1 LTR MaLR 0 365 89 725 240 0 0 chr13 35626312 35626441 -66246728 + FLAM_A SINE Alu 2 130 -3 1074 176 19 147 chr13 35626441 35626519 -66246650 - MLT1A1 LTR MaLR -276 89 3 2833 129 42 40 chr13 35626522 35626885 -66246284 + L1MC1 LINE L1 5615 5976 -357 1576 228 0 10 chr13 35626885 35627192 -66245977 + AluJo SINE Alu 1 304 -8 2268 119 0 0 chr13 35627200 35627503 -66245666 + AluSg SINE Alu 1 303 -7 2833 129 42 40 chr13 35627503 35627702 -66245467 + L1MC1 LINE L1 5982 6187 -146 1283 176 61 23 chr13 35627703 35628000 -66245169 + LTR54 LTR ERV1 1 254 -149 2234 129 0 0 chr13 35628000 35628309 -66244860 - AluSg1 SINE Alu 0 309 1 1283 176 61 23 chr13 35628309 35628461 -66244708 + LTR54 LTR ERV1 254 399 -4 705 214 7 7 chr13 35628461 35628606 -66244563 + L1MC1 LINE L1 6181 6325 -8 2266 82 31 0 chr13 35628606 35628898 -66244271 + AluSc SINE Alu 1 301 -8 292 372 67 9 chr13 35629134 35629357 -66243812 - L2 LINE L2 -1043 2271 2036 2039 159 0 0 chr13 35629390 35629686 -66243483 + AluSx SINE Alu 1 296 -16 2841 171 34 60 chr13 35629691 35630137 -66243032 + L1MB3 LINE L1 5423 5848 -335 1854 159 13 7 chr13 35630137 35630439 -66242730 + AluJb SINE Alu 1 304 -8 2841 171 34 60 chr13 35630439 35630663 -66242506 + L1MB3 LINE L1 5848 6076 -107 358 182 13 0 chr13 35630750 35630827 -66242342 + L1MB4 LINE L1 6102 6179 -1 494 159 34 35 chr13 35630827 35630952 -66242217 + L1ME3 LINE L1 5850 5986 -176 3158 142 99 14 chr13 35631444 35632002 -66241167 + MER6A DNA MER2_type 1 605 0 1077 263 45 53 chr13 35632138 35632738 -66240431 - L1MC5 LINE L1 -30 7931 7337 462 248 40 0 chr13 35632898 35633047 -66240122 - L1ME4a LINE L1 -5 6116 5962 291 298 167 0 chr13 35633211 35633325 -66239844 - MIR SINE MIR -18 244 112 308 364 23 34 chr13 35633791 35633967 -66239202 - MIR3 SINE MIR -3 205 32 679 236 68 19 chr13 35635039 35635200 -66237969 + AluJo SINE Alu 1 169 -143 414 0 0 0 chr13 35635393 35635439 -66237730 + (TC)n Simple_repeat Simple_repeat 2 47 0 297 0 0 0 chr13 35635438 35635471 -66237698 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 951 154 0 0 chr13 35635488 35635650 -66237519 - L1MB3 LINE L1 -171 6012 5851 211 296 0 0 chr13 35635657 35635728 -66237441 + (TG)n Simple_repeat Simple_repeat 2 72 0 276 222 0 0 chr13 35635738 35635801 -66237368 - L1MC5 LINE L1 -90 7871 7809 26 30 0 0 chr13 35635918 35635951 -66237218 + AT_rich Low_complexity Low_complexity 1 33 0 854 127 30 22 chr13 35635955 35636089 -66237080 - AluJb SINE Alu -177 135 1 28 0 0 0 chr13 35636091 35636119 -66237050 + AT_rich Low_complexity Low_complexity 1 28 0 2053 128 16 57 chr13 35636119 35636174 -66236995 - L1MB2 LINE L1 0 6171 6115 270 0 0 0 chr13 35636174 35636204 -66236965 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2125 108 0 4 chr13 35636204 35636483 -66236686 - AluSc SINE Alu -31 278 1 2053 128 16 57 chr13 35636483 35636849 -66236320 - L1MB2 LINE L1 -54 6117 5766 238 261 23 11 chr13 35636873 35636961 -66236208 - L1M4 LINE L1 -1564 4582 4494 974 93 93 0 chr13 35636968 35637118 -66236051 - MER5A DNA MER1_type -25 164 1 1971 188 84 16 chr13 35638042 35638532 -66234637 + Charlie1b DNA MER1_type 1 523 0 3551 135 70 38 chr13 35638783 35638867 -66234302 + MER11A LTR ERVK 143 223 -1043 2591 58 0 6 chr13 35638867 35639179 -66233990 - AluY SINE Alu -1 310 1 3551 135 70 38 chr13 35639179 35640057 -66233112 + MER11A LTR ERVK 223 1266 0 33805 92 9 27 chr13 35640057 35646195 -66226974 - L1PA6 LINE L1 -66 6088 64 452 328 90 0 chr13 35646216 35646539 -66226630 + L1MC4a LINE L1 5574 5925 -1883 210 143 29 0 chr13 35646552 35646587 -66226582 + (TG)n Simple_repeat Simple_repeat 2 37 0 257 257 14 14 chr13 35646935 35647005 -66226164 - MLT1L LTR MaLR -414 201 132 929 241 95 59 chr13 35647150 35647477 -66225692 - LTR33 LTR ERVL -8 513 163 2303 111 0 0 chr13 35647477 35647784 -66225385 + AluSg SINE Alu 2 308 -2 929 241 95 59 chr13 35647784 35647917 -66225252 - LTR33 LTR ERVL -358 163 36 1902 135 15 4 chr13 35648002 35648276 -66224893 - AluSx SINE Alu -7 305 29 209 94 19 75 chr13 35648614 35648667 -66224502 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 2077 117 17 13 chr13 35649516 35649816 -66223353 - AluSx SINE Alu -11 301 1 183 42 0 0 chr13 35650756 35650780 -66222389 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 605 142 0 25 chr13 35651564 35651684 -66221485 - MLT1D LTR MaLR 0 505 389 912 216 80 50 chr13 35651763 35651933 -66221236 - MLT1D LTR MaLR -133 372 209 237 33 0 0 chr13 35651933 35651963 -66221206 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 285 29 0 0 chr13 35651962 35651996 -66221173 + (GA)n Simple_repeat Simple_repeat 1 34 0 912 216 80 50 chr13 35651963 35652186 -66220983 - MLT1D LTR MaLR -296 209 1 188 250 181 28 chr13 35652274 35652346 -66220823 - L2 LINE L2 -12 3301 3219 1759 163 3 16 chr13 35652779 35653086 -66220083 - AluJb SINE Alu -9 303 1 609 254 90 37 chr13 35653623 35653833 -66219336 - MIR SINE MIR -13 249 23 2208 127 0 0 chr13 35653916 35654208 -66218961 + AluSg SINE Alu 1 292 -18 2882 94 0 0 chr13 35654312 35654685 -66218484 - THE1C LTR MaLR 0 375 3 8339 96 44 132 chr13 35654687 35656419 -66216750 - THE1C-int LTR MaLR 0 1580 1 2397 113 21 32 chr13 35656419 35656461 -66216708 - THE1C LTR MaLR 0 375 334 2087 142 7 0 chr13 35656461 35656764 -66216405 + AluSx SINE Alu 1 305 -7 2397 113 21 32 chr13 35656764 35657100 -66216069 - THE1C LTR MaLR -41 334 1 1333 256 139 19 chr13 35657104 35657616 -66215553 - MLT1G1 LTR MaLR -22 573 1 1892 144 23 121 chr13 35658161 35658456 -66214713 + L1MA6 LINE L1 5592 5816 -484 1593 159 87 14 chr13 35658456 35658775 -66214394 + AluJo SINE Alu 1 312 0 1892 144 23 121 chr13 35658775 35659000 -66214169 + L1MA6 LINE L1 5816 6061 -239 867 156 58 82 chr13 35659004 35659261 -66213908 + L1MB8 LINE L1 5928 6178 0 552 138 138 0 chr13 35659726 35659856 -66213313 + L1MC1 LINE L1 6180 6327 -6 874 200 12 86 chr13 35660080 35660335 -66212834 + MER106A DNA MER1_type 1 236 0 388 243 81 58 chr13 35660443 35660616 -66212553 + HAL1 LINE L1 833 1009 -1498 2343 99 0 0 chr13 35660679 35660982 -66212187 + AluSx SINE Alu 1 303 -9 2130 133 3 3 chr13 35660984 35661286 -66211883 + AluSx SINE Alu 1 302 -10 316 298 54 32 chr13 35661300 35661469 -66211700 + L1MEd LINE L1 918 1114 -5053 189 189 27 0 chr13 35661622 35661659 -66211510 + MIR SINE MIR 149 186 -76 1002 185 82 26 chr13 35662151 35662383 -66210786 - MIR SINE MIR -1 261 17 310 331 100 25 chr13 35662961 35663281 -66209888 + L1M4 LINE L1 4996 5339 -807 2010 100 11 0 chr13 35663356 35663626 -66209543 - AluSq SINE Alu -30 283 11 7687 124 22 19 chr13 35663648 35664933 -66208236 + HSMAR2 DNA Mariner 9 1297 -5 414 0 0 0 chr13 35664933 35664979 -66208190 + (TG)n Simple_repeat Simple_repeat 2 47 0 2073 115 53 31 chr13 35665424 35666143 -66207026 + Ricksha DNA DNA 2452 3247 -7 724 175 0 44 chr13 35666398 35666535 -66206634 + FLAM_C SINE Alu 1 131 -12 35 33 0 17 chr13 35666536 35666569 -66206600 + AT_rich Low_complexity Low_complexity 1 34 -25 2346 89 7 0 chr13 35666569 35666862 -66206307 + AluSg SINE Alu 1 295 -15 35 33 0 17 chr13 35666862 35666888 -66206281 + AT_rich Low_complexity Low_complexity 34 59 0 877 220 35 20 chr13 35667418 35667618 -66205551 - L2 LINE L2 -5 3308 3106 2306 249 76 18 chr13 35668081 35668844 -66204325 - L2 LINE L2 -219 3094 2291 1096 212 45 101 chr13 35669124 35669260 -66203909 + L1ME2 LINE L1 5662 5804 -360 1795 159 0 25 chr13 35669260 35669574 -66203595 + AluJb SINE Alu 1 306 -6 1096 212 45 101 chr13 35669574 35669952 -66203217 + L1ME2 LINE L1 5804 6147 -17 21 0 0 0 chr13 35670212 35670233 -66202936 + AT_rich Low_complexity Low_complexity 1 21 0 361 219 151 34 chr13 35670832 35670978 -66202191 - MER20B DNA MER1_type -620 163 1 194 289 0 0 chr13 35671546 35671591 -66201578 - L2 LINE L2 -239 3033 2989 234 273 65 26 chr13 35671918 35671995 -66201174 - L2 LINE L2 0 3272 3193 24 0 0 0 chr13 35672024 35672048 -66201121 + AT_rich Low_complexity Low_complexity 1 24 0 283 298 119 62 chr13 35672114 35672513 -66200656 - L2 LINE L2 -219 3053 2624 1897 159 61 6 chr13 35674169 35674515 -66198654 + MLT1A1 LTR MaLR 1 365 0 309 299 24 47 chr13 35675344 35675471 -66197698 + L2 LINE L2 3172 3295 -18 21 57 0 0 chr13 35676911 35676946 -66196223 + AT_rich Low_complexity Low_complexity 1 35 0 357 241 28 19 chr13 35677142 35677250 -66195919 + L1ME1 LINE L1 6035 6143 -23 1076 119 110 32 chr13 35677308 35677498 -66195671 + L1PA16 LINE L1 5804 6015 -151 186 43 0 0 chr13 35677498 35677521 -66195648 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 1076 119 110 32 chr13 35677521 35677549 -66195620 + L1PA16 LINE L1 6015 6039 -127 4769 68 5 2 chr13 35677549 35678191 -66194978 + L1PA7 LINE L1 5521 6164 0 964 65 14 7 chr13 35678191 35678329 -66194840 + L1PA16 LINE L1 6028 6166 0 230 275 0 0 chr13 35679252 35679321 -66193848 + AluSq SINE Alu 145 213 -90 609 160 9 0 chr13 35679523 35679629 -66193540 - FLAM_C SINE Alu -36 107 1 266 179 0 30 chr13 35679629 35679696 -66193473 + MER58A DNA MER1_type 48 112 0 603 161 93 43 chr13 35680357 35680519 -66192650 + MER105 DNA DNA 34 203 -1 329 248 88 93 chr13 35680756 35680887 -66192282 + L1MC4 LINE L1 7623 7754 -288 1781 136 51 30 chr13 35680887 35681219 -66191950 + MER44D DNA MER2_type 1 609 0 329 248 88 93 chr13 35681219 35681313 -66191856 + L1MC4 LINE L1 7754 7847 -195 1886 151 0 33 chr13 35682580 35682879 -66190290 + AluJb SINE Alu 1 289 -23 337 83 0 33 chr13 35682910 35682970 -66190199 + (CA)n Simple_repeat Simple_repeat 1 58 0 2298 104 0 0 chr13 35683006 35683304 -66189865 + AluSq SINE Alu 1 298 -15 1761 113 71 37 chr13 35685546 35685872 -66187297 - MER1B DNA MER1_type 0 339 3 270 376 133 26 chr13 35686660 35686886 -66186283 - L2 LINE L2 -25 3247 2998 1422 175 17 34 chr13 35687543 35687840 -66185329 - AluJo SINE Alu -20 292 1 360 0 0 0 chr13 35687841 35687881 -66185288 + (T)n Simple_repeat Simple_repeat 1 40 0 195 349 47 0 chr13 35688001 35688087 -66185082 + MIR3 SINE MIR 106 195 -13 343 319 119 63 chr13 35690303 35690925 -66182244 - L1M2 LINE L1 -5445 1404 628 44 46 0 0 chr13 35693351 35693416 -66179753 + AT_rich Low_complexity Low_complexity 1 65 0 2281 89 0 41 chr13 35693605 35693741 -66179428 + AluSp SINE Alu 1 141 -172 2355 66 0 35 chr13 35693741 35694060 -66179109 + AluY SINE Alu 1 308 -3 2281 89 0 41 chr13 35694060 35694239 -66178930 + AluSp SINE Alu 141 303 -10 192 77 0 0 chr13 35694255 35694281 -66178888 + (GA)n Simple_repeat Simple_repeat 2 27 0 676 169 7 0 chr13 35694327 35694469 -66178700 + L1MC1 LINE L1 5185 5327 -819 1012 183 0 24 chr13 35694475 35694644 -66178525 + FAM SINE Alu 1 165 -10 487 193 0 12 chr13 35694653 35694736 -66178433 + FRAM/FAM SINE Alu 1 79 -97 183 80 0 0 chr13 35694740 35694765 -66178404 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 268 172 0 0 chr13 35694767 35694825 -66178344 - Charlie5 DNA MER1_type -2505 107 50 4731 137 84 42 chr13 35694826 35695798 -66177371 + L1MC1 LINE L1 5319 6331 -2 2196 106 3 16 chr13 35696277 35696589 -66176580 - AluSx SINE Alu -4 308 1 183 80 0 0 chr13 35697062 35697087 -66176082 + (TG)n Simple_repeat Simple_repeat 1 25 0 183 298 95 0 chr13 35697213 35697297 -66175872 + L3 LINE CR1 631 722 -855 210 71 0 0 chr13 35697524 35697552 -66175617 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2110 142 9 0 chr13 35697924 35698256 -66174913 - MER2 DNA MER2_type -10 335 1 1614 142 0 15 chr13 35699553 35699814 -66173355 + AluSg SINE Alu 1 257 -53 32 0 0 0 chr13 35700302 35700334 -66172835 + AT_rich Low_complexity Low_complexity 1 32 0 253 289 70 23 chr13 35700547 35700675 -66172494 + L2 LINE L2 3179 3312 -1 2422 68 3 0 chr13 35700684 35700978 -66172191 - AluY SINE Alu -16 295 1 238 318 47 47 chr13 35701138 35701245 -66171924 - L2 LINE L2 -16 3256 3150 537 278 104 33 chr13 35701433 35701854 -66171315 + L1ME1 LINE L1 3877 4327 -1819 1548 214 79 18 chr13 35701857 35702314 -66170855 + L1ME1 LINE L1 5675 6159 -7 386 224 32 86 chr13 35702360 35702491 -66170678 + L1MC/D LINE L1 5474 5599 -649 1296 109 81 0 chr13 35702491 35702701 -66170468 - MER30 DNA MER1_type 0 230 4 386 224 32 86 chr13 35702701 35702833 -66170336 + L1MC/D LINE L1 5599 5737 -511 824 134 7 35 chr13 35702879 35703021 -66170148 + FLAM_C SINE Alu 3 140 -3 23 54 0 0 chr13 35703932 35703969 -66169200 + AT_rich Low_complexity Low_complexity 1 37 0 2309 104 0 0 chr13 35704186 35704485 -66168684 + AluSc SINE Alu 1 299 -10 2365 83 0 7 chr13 35705235 35705536 -66167633 + AluY SINE Alu 1 299 -12 2337 88 7 0 chr13 35706025 35706319 -66166850 - AluSx SINE Alu -16 296 1 289 296 61 0 chr13 35707251 35707349 -66165820 - MIR3 SINE MIR -28 180 77 36 23 0 0 chr13 35707493 35707536 -66165633 + AT_rich Low_complexity Low_complexity 1 43 0 1830 147 50 7 chr13 35707536 35707815 -66165354 - AluJb SINE Alu -21 291 1 345 209 47 70 chr13 35708422 35708551 -66164618 + HAL1 LINE L1 43 168 -2339 626 193 167 10 chr13 35708605 35708797 -66164372 + HAL1 LINE L1 1449 1670 -837 528 221 81 97 chr13 35708962 35709396 -66163773 + HAL1 LINE L1 1911 2337 -170 792 174 68 133 chr13 35709401 35709723 -66163446 + Charlie1b DNA MER1_type 6 306 -217 510 155 0 10 chr13 35709716 35709813 -66163356 + Charlie1b DNA MER1_type 428 523 0 * 2151 98 4 0 chr13 35709850 35710127 -66163042 + AluSx SINE Alu 1 278 -34 471 305 189 0 chr13 35710178 35710342 -66162827 + MER91A DNA MER1_type 2 196 0 580 245 87 15 chr13 35710476 35710672 -66162497 + L1ME2 LINE L1 5949 6158 -6 1712 123 0 4 chr13 35710998 35711241 -66161928 + AluSg SINE Alu 59 300 -10 473 235 39 0 chr13 35711305 35711407 -66161762 - MIR SINE MIR -106 156 51 433 272 24 8 chr13 35711510 35711635 -66161534 - MER58 DNA MER1_type -211 130 4 247 245 0 0 chr13 35711723 35711772 -66161397 + Charlie8 DNA MER1_type 125 173 -2244 1945 152 17 0 chr13 35711799 35712089 -66161080 - AluSx SINE Alu -16 296 2 22 0 0 0 chr13 35712489 35712511 -66160658 + AT_rich Low_complexity Low_complexity 1 22 0 421 62 15 0 chr13 35712603 35712668 -66160501 + MER41B LTR ERV1 481 546 -89 578 305 63 11 chr13 35714900 35715251 -66157918 + L1ME LINE L1 5396 5764 -357 198 0 0 0 chr13 35715253 35715275 -66157894 + (TG)n Simple_repeat Simple_repeat 2 23 0 703 198 0 0 chr13 35715278 35715394 -66157775 - FLAM_C SINE Alu -27 116 1 362 298 32 32 chr13 35715780 35715904 -66157265 - L2 LINE L2 -4 3268 3145 2387 125 35 5 chr13 35715914 35716290 -66156879 - MLT1B LTR MaLR -3 387 1 2303 98 3 3 chr13 35716314 35716621 -66156548 + AluSp SINE Alu 1 307 -6 327 258 32 11 chr13 35718686 35718779 -66154390 + L2 LINE L2 3218 3312 -1 271 301 264 0 chr13 35718863 35719056 -66154113 + MIR SINE MIR 14 257 -5 1944 149 3 0 chr13 35719079 35719404 -66153765 + AluJb SINE Alu 1 326 0 2142 135 16 11 chr13 35719635 35720006 -66153163 - L1MB3 LINE L1 -7 6176 5804 1519 138 20 126 chr13 35720041 35720397 -66152772 - AluYb8 SINE Alu 0 318 1 2443 62 3 31 chr13 35720480 35720800 -66152369 - AluY SINE Alu 0 311 1 246 279 128 0 chr13 35722510 35722596 -66150573 - MER5A DNA MER1_type -87 102 6 1909 137 7 3 chr13 35723501 35723809 -66149360 + AluSg SINE Alu 1 309 0 21 36 0 0 chr13 35724322 35724350 -66148819 + AT_rich Low_complexity Low_complexity 1 28 0 183 368 45 45 chr13 35724696 35724919 -66148250 + L2 LINE L2 2607 2829 -485 688 278 75 82 chr13 35725348 35725812 -66147357 - L2 LINE L2 -710 2604 2144 188 357 12 24 chr13 35726360 35726444 -66146725 + L2 LINE L2 2592 2674 -640 28 0 0 0 chr13 35726444 35726472 -66146697 + AT_rich Low_complexity Low_complexity 1 28 0 1960 146 3 7 chr13 35726473 35726761 -66146408 - AluJb SINE Alu -25 287 1 440 333 98 14 chr13 35726761 35727037 -66146132 + L2 LINE L2 2662 2960 -354 192 156 172 47 chr13 35727122 35727186 -66145983 + L2 LINE L2 3150 3221 -92 2170 66 14 3 chr13 35727517 35727805 -66145364 + AluY SINE Alu 1 291 -20 664 277 40 68 chr13 35728106 35728162 -66145007 - MIR SINE MIR 0 262 206 2638 3 0 0 chr13 35728162 35728478 -66144691 - AluYa5 SINE Alu 0 316 1 664 277 40 68 chr13 35728478 35728669 -66144500 - MIR SINE MIR -56 206 21 193 154 0 26 chr13 35728741 35728780 -66144389 - MIR SINE MIR -7 255 218 696 306 128 30 chr13 35728999 35729192 -66143977 - L2 LINE L2 -410 2904 2731 1490 180 39 7 chr13 35729192 35729476 -66143693 + AluJb SINE Alu 1 293 -19 2451 80 3 0 chr13 35729480 35729780 -66143389 + AluSp SINE Alu 1 301 -12 696 306 128 30 chr13 35729780 35730182 -66142987 - L2 LINE L2 -585 2729 2245 2225 95 0 10 chr13 35730261 35730556 -66142613 + AluSc SINE Alu 2 293 -16 1383 88 5 5 chr13 35731087 35731279 -66141890 + AluY SINE Alu 1 192 -119 2374 203 3 52 chr13 35732047 35732092 -66141077 + L1M4 LINE L1 3653 3699 -2447 892 152 0 36 chr13 35732092 35732230 -66140939 + FLAM_A SINE Alu 1 133 0 2374 203 3 52 chr13 35732230 35732407 -66140762 + L1M4 LINE L1 3699 3883 -2263 2201 89 34 0 chr13 35732407 35732700 -66140469 + AluSq SINE Alu 1 303 -10 2374 203 3 52 chr13 35732700 35733057 -66140112 + L1M4 LINE L1 3883 4205 -1941 2108 146 0 3 chr13 35733086 35733388 -66139781 - AluSx SINE Alu -11 301 1 2761 214 39 64 chr13 35733398 35733609 -66139560 - L1MEc LINE L1 -2947 3268 3053 2011 127 7 3 chr13 35733609 35733901 -66139268 - AluSq SINE Alu -20 293 1 2761 214 39 64 chr13 35733901 35734617 -66138552 - L1MEc LINE L1 -3162 3053 2364 982 144 0 40 chr13 35734635 35734808 -66138361 - AluJo/FRAM SINE Alu -13 299 134 1931 149 0 35 chr13 35734808 35735124 -66138045 - AluSx SINE Alu -7 305 1 381 194 103 101 chr13 35735127 35735190 -66137979 - L1MEc LINE L1 -3854 2361 2300 2062 138 14 0 chr13 35735190 35735487 -66137682 - AluSx SINE Alu -11 301 1 381 194 103 101 chr13 35735487 35735736 -66137433 - L1MEc LINE L1 -3915 2300 2094 409 89 36 0 chr13 35735740 35735796 -66137373 - FAM SINE Alu -23 162 105 408 335 132 16 chr13 35736014 35736333 -66136836 - L1MEc LINE L1 -6012 384 29 306 305 30 23 chr13 35737530 35737661 -66135508 - MIR SINE MIR -110 152 21 230 121 0 0 chr13 35737849 35737882 -66135287 - L2 LINE L2 -17 3296 3264 376 231 67 0 chr13 35737915 35738019 -66135150 + L1ME4a LINE L1 5535 5645 -476 227 175 18 18 chr13 35738132 35738189 -66134980 - MLT2C1 LTR ERVL 0 520 464 1733 157 44 29 chr13 35738222 35738566 -66134603 - MLT2C1 LTR ERVL -48 349 1 299 291 55 24 chr13 35738836 35738963 -66134206 - MLT1L LTR MaLR -335 280 150 424 282 166 11 chr13 35739348 35739529 -66133640 - MER63A DNA MER1_type 0 210 2 242 163 0 0 chr13 35739623 35739666 -66133503 - L1MB5 LINE L1 -1 6173 6131 2074 129 3 3 chr13 35739752 35740070 -66133099 + AluSx SINE Alu 1 318 0 1087 273 146 57 chr13 35740070 35740915 -66132254 - L1MC4a LINE L1 -1634 6174 5255 2161 95 28 0 chr13 35741084 35741367 -66131802 - AluSg SINE Alu -19 291 1 2961 132 104 20 chr13 35743056 35743594 -66129575 - LTR59 LTR ERV1 -6 591 9 1903 90 124 0 chr13 35745368 35745634 -66127535 + AluSp SINE Alu 1 299 -14 200 273 18 45 chr13 35745817 35745927 -66127242 + GA-rich Low_complexity Low_complexity 3 109 0 243 223 121 79 chr13 35746062 35746134 -66127035 + L1ME4a LINE L1 5875 5943 -178 2178 104 0 0 chr13 35746134 35746421 -66126748 - AluSq SINE Alu -26 287 1 243 223 121 79 chr13 35746421 35746563 -66126606 + L1ME4a LINE L1 5943 6098 -23 530 193 128 9 chr13 35746605 35746714 -66126455 + FLAM_C SINE Alu 1 122 -11 27 0 0 0 chr13 35746714 35746741 -66126428 + AT_rich Low_complexity Low_complexity 1 27 0 2376 82 3 0 chr13 35746920 35747214 -66125955 - AluSg SINE Alu -15 295 1 1784 119 236 9 chr13 35747312 35747655 -66125514 - MER61C LTR ERV1 0 434 14 235 274 44 25 chr13 35747676 35747781 -66125388 - MER5A DNA MER1_type -65 124 7 303 163 0 75 chr13 35747788 35747868 -66125301 + Charlie7 DNA MER1_type 38 111 -2501 * 369 211 88 35 chr13 35747838 35748009 -66125160 + Charlie7 DNA MER1_type 2432 2611 -1 2197 99 3 45 chr13 35748407 35748720 -66124449 + AluSg SINE Alu 2 301 -9 738 206 44 22 chr13 35748864 35749044 -66124125 - HAL1 LINE L1 -976 1531 1348 4701 235 107 103 chr13 35749108 35750072 -66123097 + HAL1 LINE L1 138 1097 -1410 1364 98 0 5 chr13 35750072 35750256 -66122913 + AluSg/x SINE Alu 128 310 0 4701 235 107 103 chr13 35750256 35751457 -66121712 + HAL1 LINE L1 1097 2495 -12 320 302 12 0 chr13 35752337 35752423 -66120746 + MER5B DNA MER1_type 1 87 -91 1620 202 57 95 chr13 35752626 35752816 -66120353 - MLT1D LTR MaLR -1 504 308 2204 106 0 28 chr13 35752816 35753136 -66120033 - AluSx SINE Alu -1 311 1 1620 202 57 95 chr13 35753136 35753148 -66120021 - MLT1D LTR MaLR -197 308 297 2114 91 24 24 chr13 35753148 35753445 -66119724 - AluSg SINE Alu -13 297 1 1620 202 57 95 chr13 35753445 35753765 -66119404 - MLT1D LTR MaLR -208 297 1 216 212 99 113 chr13 35754151 35754302 -66118867 - MER5A DNA MER1_type -40 149 1 2342 92 0 3 chr13 35754335 35754630 -66118539 - AluSg SINE Alu -16 294 1 1053 187 0 12 chr13 35754718 35754884 -66118285 - FRAM SINE Alu -2 164 1 199 240 156 101 chr13 35756096 35756209 -66116960 + MIR SINE MIR 49 177 -85 2353 86 0 0 chr13 35756209 35756499 -66116670 - AluSg SINE Alu -19 291 2 199 240 156 101 chr13 35756499 35756564 -66116605 + MIR SINE MIR 177 237 -25 5978 147 22 45 chr13 35756760 35756879 -66116290 + L1MC2 LINE L1 5186 5306 -1038 2013 97 0 88 chr13 35756879 35757198 -66115971 + AluSg SINE Alu 1 291 -19 5978 147 22 45 chr13 35757198 35758201 -66114968 + L1MC2 LINE L1 5306 6283 -61 2127 106 0 82 chr13 35758201 35758541 -66114628 - AluSx SINE Alu 0 312 1 5978 147 22 45 chr13 35758541 35758594 -66114575 + L1MC2 LINE L1 6283 6336 -8 1911 113 3 56 chr13 35758942 35759288 -66113881 - AluSq SINE Alu 0 330 1 417 254 0 29 chr13 35759728 35759866 -66113303 - L1ME4a LINE L1 0 6121 5988 1308 250 145 38 chr13 35759993 35760489 -66112680 + L2 LINE L2 1560 2132 -1182 2287 110 13 0 chr13 35760489 35760789 -66112380 - AluSx SINE Alu -8 304 1 1308 250 145 38 chr13 35760789 35760892 -66112277 + L2 LINE L2 2132 2223 -1091 1127 168 6 0 chr13 35760892 35761065 -66112104 - AluJo/FRAM SINE Alu -10 302 129 1573 126 0 9 chr13 35761066 35761289 -66111880 - AluSq SINE Alu -92 221 1 770 245 81 66 chr13 35762063 35762242 -66110927 + L2 LINE L2 2782 2957 -356 2210 86 48 0 chr13 35762242 35762534 -66110635 - AluSp SINE Alu -5 308 3 770 245 81 66 chr13 35762534 35762875 -66110294 + L2 LINE L2 2957 3312 -1 372 43 0 0 chr13 35763323 35763369 -66109800 + (TG)n Simple_repeat Simple_repeat 1 46 0 1925 127 4 0 chr13 35763369 35763644 -66109525 - AluSp SINE Alu -33 280 5 355 286 85 20 chr13 35763917 35764116 -66109053 - L1ME LINE L1 -346 5775 5564 2864 138 12 33 chr13 35764836 35765147 -66108022 + L1MB5 LINE L1 5699 5998 -176 2673 133 30 30 chr13 35765147 35765187 -66107982 - MSTA LTR MaLR 0 428 389 1796 155 3 11 chr13 35765187 35765493 -66107676 + AluJb SINE Alu 1 304 0 2673 133 30 30 chr13 35765493 35765879 -66107290 - MSTA LTR MaLR -38 390 1 2864 138 12 33 chr13 35765879 35766052 -66107117 + L1MB5 LINE L1 5998 6173 -1 204 304 217 11 chr13 35766199 35766291 -66106878 - L2 LINE L2 0 3272 3162 2277 109 0 7 chr13 35766745 35767049 -66106120 - AluSg SINE Alu -8 302 1 5163 137 35 12 chr13 35767127 35767595 -66105574 - L1MA8 LINE L1 -24 6267 5768 243 0 0 0 chr13 35767595 35767622 -66105547 + (TG)n Simple_repeat Simple_repeat 2 28 0 5163 137 35 12 chr13 35767622 35768042 -66105127 - L1MA8 LINE L1 -523 5768 5359 845 172 14 0 chr13 35768042 35768187 -66104982 - FRAM SINE Alu -10 166 20 263 143 20 0 chr13 35768194 35768243 -66104926 - L1MA8 LINE L1 -923 5368 5319 1745 122 103 4 chr13 35768800 35769071 -66104098 + AluSx SINE Alu 1 298 -14 931 246 98 27 chr13 35769211 35769548 -66103621 - L1MC4a LINE L1 -1810 5998 5638 236 185 77 15 chr13 35769592 35769657 -66103512 - MER69B DNA AcHobo -8 1218 1150 5038 234 18 12 chr13 35770276 35771436 -66101733 - MER69B DNA AcHobo -59 1167 1 875 316 30 12 chr13 35771441 35771780 -66101389 - L1MC4a LINE L1 -2201 5607 5263 965 209 100 7 chr13 35772655 35772923 -66100246 + L1MA9 LINE L1 6001 6291 -9 336 292 0 11 chr13 35773147 35773236 -66099933 - MIR3 SINE MIR -8 200 113 638 260 77 20 chr13 35773492 35773688 -66099481 + MIR SINE MIR 56 262 0 2139 118 0 3 chr13 35773809 35774105 -66099064 - AluSx SINE Alu -17 295 1 788 143 63 8 chr13 35774876 35775002 -66098167 + FLAM_A SINE Alu 1 133 0 369 0 0 0 chr13 35775303 35775344 -66097825 + (TA)n Simple_repeat Simple_repeat 1 41 0 2338 92 10 0 chr13 35775358 35775662 -66097507 - AluSx SINE Alu 0 312 6 232 347 41 31 chr13 35775688 35775786 -66097383 + L2 LINE L2 3141 3239 -33 527 257 23 39 chr13 35775821 35776064 -66097105 + L1ME1 LINE L1 5690 5928 -238 33 25 0 0 chr13 35776064 35776104 -66097065 + AT_rich Low_complexity Low_complexity 1 40 0 2329 84 7 0 chr13 35777566 35777865 -66095304 + AluSq SINE Alu 1 301 -12 310 154 200 0 chr13 35778457 35778522 -66094647 + MER81 DNA DNA 1 78 -36 502 180 30 20 chr13 35778522 35778622 -66094547 + FLAM_C SINE Alu 40 140 -3 2285 110 0 3 chr13 35778786 35779095 -66094074 - AluSg SINE Alu -2 308 1 1992 128 0 4 chr13 35779233 35779514 -66093655 - AluSx SINE Alu -32 280 1 252 0 0 0 chr13 35781170 35781198 -66091971 + (ATAGG)n Simple_repeat Simple_repeat 4 31 0 1906 106 16 4 chr13 35781539 35781794 -66091375 - AluSg SINE Alu -52 258 1 964 222 64 13 chr13 35782660 35782894 -66090275 + MIR SINE MIR 14 259 -3 27 0 0 0 chr13 35784229 35784256 -66088913 + AT_rich Low_complexity Low_complexity 1 27 0 1837 92 117 50 chr13 35784642 35784925 -66088244 + AluJo SINE Alu 1 302 0 358 308 51 62 chr13 35784937 35785132 -66088037 + LTR16B LTR ERVL 34 226 -238 2677 26 0 7 chr13 35785213 35785517 -66087652 - L1PA4 LINE L1 -3 6152 5851 1965 118 22 7 chr13 35785618 35785889 -66087280 - AluSx SINE Alu -37 275 1 578 173 27 0 chr13 35785889 35785999 -66087170 + L1MC3 LINE L1 7627 7739 -46 1120 101 34 45 chr13 35786000 35786179 -66086990 - AluJb SINE Alu -52 260 84 358 278 0 26 chr13 35786256 35786371 -66086798 - HAL1 LINE L1 -349 2158 2047 278 353 45 8 chr13 35786805 35786938 -66086231 - L3 LINE CR1 -1011 566 429 1801 130 0 4 chr13 35787843 35788113 -66085056 + AluSg SINE Alu 42 310 0 771 270 25 0 chr13 35788336 35788540 -66084629 - MIR SINE MIR -51 211 3 564 129 0 0 chr13 35789712 35789813 -66083356 + (TCCA)n Simple_repeat Simple_repeat 2 102 0 334 301 80 9 chr13 35789843 35789956 -66083213 - L2 LINE L2 -15 3257 3137 2409 89 0 3 chr13 35790666 35790970 -66082199 + AluSq SINE Alu 1 303 -10 207 296 0 28 chr13 35791183 35791254 -66081915 - MIR SINE MIR -38 224 156 * 234 103 0 176 chr13 35791252 35791320 -66081849 + L2 LINE L2 3257 3312 -1 239 266 16 16 chr13 35791323 35791387 -66081782 - MIR SINE MIR -109 153 90 882 57 0 0 chr13 35792289 35792395 -66080774 + AluSp/q SINE Alu 200 305 -8 1209 164 13 44 chr13 35792395 35792620 -66080549 - AluJo SINE Alu -30 282 65 279 0 0 0 chr13 35793264 35793295 -66079874 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 884 152 0 0 chr13 35793299 35793424 -66079745 - FLAM_C SINE Alu -18 125 1 1406 217 15 0 chr13 35793509 35793772 -66079397 + Tigger7 DNA MER2_type 1 267 -2220 571 135 101 0 chr13 35793771 35793860 -66079309 + Tigger7 DNA MER2_type 2390 2487 0 * 184 242 0 97 chr13 35793891 35793953 -66079216 + L2 LINE L2 2985 3040 -232 424 250 0 0 chr13 35794023 35794115 -66079054 + MER93a LTR ERV1 7 98 -304 646 257 147 64 chr13 35794136 35794230 -66078939 + L2 LINE L2 2922 3007 -306 2282 102 0 7 chr13 35794230 35794533 -66078636 - AluSx SINE Alu -11 301 1 646 257 147 64 chr13 35794533 35794784 -66078385 + L2 LINE L2 3007 3296 -17 186 43 0 0 chr13 35794787 35794810 -66078359 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 954 185 130 0 chr13 35795852 35796052 -66077117 - L1MC3 LINE L1 -265 7520 7295 1556 176 61 71 chr13 35796054 35796280 -66076889 - MLT1B LTR MaLR -1 389 167 8423 13 0 0 chr13 35796280 35797260 -66075909 + L1PA2 LINE L1 5176 6155 0 1556 176 61 71 chr13 35797260 35797426 -66075743 - MLT1B LTR MaLR -223 167 1 428 178 75 9 chr13 35797428 35797535 -66075634 - L1MC3 LINE L1 -492 7293 7180 2116 103 7 0 chr13 35797542 35797854 -66075315 - AluSx SINE Alu 0 314 1 1783 189 9 96 chr13 35797856 35798166 -66075003 + MSTB LTR MaLR 1 262 -164 548 202 182 0 chr13 35798166 35798265 -66074904 + FLAM_C SINE Alu 1 117 -16 1783 189 9 96 chr13 35798265 35798404 -66074765 + MSTB LTR MaLR 262 411 -15 2708 166 36 24 chr13 35798440 35799144 -66074025 - L1MC3 LINE L1 -1128 6657 5728 514 268 124 0 chr13 35799265 35799418 -66073751 + MIR SINE MIR 1 172 -90 503 327 75 10 chr13 35799667 35799866 -66073303 + L3 LINE CR1 1012 1223 -354 314 239 137 17 chr13 35799867 35799984 -66073185 + L1ME4a LINE L1 5968 6098 -23 2617 68 0 0 chr13 35800034 35800345 -66072824 + AluSx SINE Alu 1 311 -1 309 330 0 9 chr13 35800544 35800650 -66072519 + L3 LINE CR1 1266 1370 -207 1568 199 85 47 chr13 35800983 35801431 -66071738 - MLT1C LTR MaLR 0 467 3 285 228 101 13 chr13 35801607 35801686 -66071483 + L2 LINE L2 3186 3271 -1 2278 115 0 0 chr13 35801869 35802181 -66070988 + AluSx SINE Alu 1 312 0 1158 280 23 33 chr13 35802836 35803229 -66069940 - L2 LINE L2 -1883 1431 1043 1792 201 3 12 chr13 35803266 35803594 -66069575 - MLT1B LTR MaLR -2 388 64 389 151 187 43 chr13 35803581 35803720 -66069449 + MER112 DNA MER1_type 6 164 -96 * 521 238 89 92 chr13 35803760 35803836 -66069333 + HAL1 LINE L1 2118 2193 -314 1798 137 83 11 chr13 35803836 35804114 -66069055 - AluSp SINE Alu -15 298 1 521 238 89 92 chr13 35804114 35804428 -66068741 + HAL1 LINE L1 2193 2507 0 630 167 0 0 chr13 35804625 35804745 -66068424 + HSMAR2 DNA Mariner 1182 1301 -1 1082 196 34 0 chr13 35804820 35805024 -66068145 + MIR SINE MIR 13 223 -39 22 0 0 0 chr13 35805372 35805394 -66067775 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr13 35805436 35805468 -66067701 + AT_rich Low_complexity Low_complexity 1 32 0 2392 148 50 0 chr13 35806485 35806889 -66066280 + L1MB3 LINE L1 5719 6142 -41 2399 70 3 13 chr13 35806889 35807203 -66065966 + AluY SINE Alu 1 311 0 183 182 0 0 chr13 35808690 35808723 -66064446 - L2 LINE L2 -352 2962 2930 195 264 0 38 chr13 35809189 35809242 -66063927 + L2 LINE L2 3004 3054 -218 491 81 0 0 chr13 35809457 35809519 -66063650 + Alu SINE Alu 2 63 -248 866 242 104 76 chr13 35810444 35810727 -66062442 + L2 LINE L2 2498 2772 -541 2357 74 3 16 chr13 35810727 35811038 -66062131 + AluSp SINE Alu 1 307 -6 866 242 104 76 chr13 35811038 35811512 -66061657 + L2 LINE L2 2772 3313 0 917 226 20 10 chr13 35812072 35812276 -66060893 - MER58A DNA MER1_type 0 224 19 1380 182 6 64 chr13 35813373 35813686 -66059483 - AluJb SINE Alu -17 295 1 238 267 0 0 chr13 35814076 35814121 -66059048 - L2 LINE L2 -5 3267 3223 222 300 20 0 chr13 35814323 35814373 -66058796 - L3 LINE CR1 -9 1568 1518 223 154 51 0 chr13 35814411 35814450 -66058719 - MIR SINE MIR -130 78 38 461 296 106 25 chr13 35814985 35815184 -66057985 - MIR SINE MIR -2 260 46 258 111 89 0 chr13 35815205 35815250 -66057919 + MER113 DNA MER1_type? 35 83 -438 2363 98 0 0 chr13 35815269 35815565 -66057604 - AluSg SINE Alu -14 296 1 2198 84 7 0 chr13 35815767 35816051 -66057118 - AluSp SINE Alu -27 286 1 2116 123 14 0 chr13 35816075 35816367 -66056802 - AluSx SINE Alu -16 296 1 28 86 0 0 chr13 35817219 35817289 -66055880 + AT_rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 35817622 35817643 -66055526 + AT_rich Low_complexity Low_complexity 1 21 0 1932 125 12 65 chr13 35817645 35817966 -66055203 + AluSg SINE Alu 1 304 -6 2024 128 3 10 chr13 35817968 35818256 -66054913 + AluSx SINE Alu 1 286 -26 231 183 33 0 chr13 35818256 35818316 -66054853 + (TA)n Simple_repeat Simple_repeat 1 62 0 345 309 29 7 chr13 35818323 35818459 -66054710 - L1ME4a LINE L1 -12 6109 5971 410 296 146 39 chr13 35818644 35818846 -66054323 - MIR SINE MIR 0 262 30 2033 133 10 26 chr13 35818846 35819154 -66054015 - AluSx SINE Alu -9 303 1 410 296 146 39 chr13 35819154 35819184 -66053985 - MIR SINE MIR -232 30 5 2649 34 0 0 chr13 35820292 35820588 -66052581 - AluY SINE Alu -15 296 1 202 229 0 0 chr13 35822346 35822394 -66050775 + A-rich Low_complexity Low_complexity 1 48 0 2462 93 0 0 chr13 35822707 35823019 -66050150 - AluSx SINE Alu 0 312 1 1645 146 71 11 chr13 35823392 35823672 -66049497 - AluSx SINE Alu -12 300 4 23 33 0 0 chr13 35824053 35824083 -66049086 + AT_rich Low_complexity Low_complexity 1 30 0 245 305 0 0 chr13 35824234 35824316 -66048853 - L1ME4a LINE L1 -238 5883 5802 388 226 38 9 chr13 35824759 35824865 -66048304 - LTR41 LTR ERVL -595 178 70 1751 164 20 13 chr13 35825428 35825733 -66047436 + AluJo SINE Alu 6 312 0 25 31 0 0 chr13 35826699 35826731 -66046438 + AT_rich Low_complexity Low_complexity 1 32 0 415 220 92 52 chr13 35826767 35826940 -66046229 - HAL1 LINE L1 -56 2451 2272 1575 211 103 44 chr13 35827503 35827978 -66045191 - MLT1D LTR MaLR 0 505 3 2397 74 0 3 chr13 35828066 35828362 -66044807 - AluY SINE Alu -16 295 1 631 224 48 0 chr13 35828632 35828757 -66044412 - FLAM_C SINE Alu -1 132 2 240 179 0 119 chr13 35829249 35829316 -66043853 + L2 LINE L2 3214 3272 0 1489 193 61 4 chr13 35829319 35829599 -66043570 + AluJb SINE Alu 1 296 -16 1148 242 61 37 chr13 35829984 35830360 -66042809 + L1MB3 LINE L1 5 389 -6153 2061 151 78 20 chr13 35830361 35830759 -66042410 - MER61C LTR ERV1 0 434 14 28736 91 31 31 chr13 35830777 35831372 -66041797 - MER61C-int LTR ERV1 0 5217 4623 2003 141 10 0 chr13 35831372 35831663 -66041506 + AluSx SINE Alu 1 294 -18 28736 91 31 31 chr13 35831663 35835329 -66037840 - MER61C-int LTR ERV1 -594 4623 958 3058 111 18 47 chr13 35835329 35835842 -66037327 - MER61C-int LTR ERV1 -4377 840 343 951 151 54 96 chr13 35835821 35836060 -66037109 - MER61C-int LTR ERV1 -4987 230 2 * 2397 140 35 14 chr13 35836064 35836489 -66036680 - MER61C LTR ERV1 -4 430 13 2427 242 10 4 chr13 35836492 35837009 -66036160 + L1MB3 LINE L1 389 908 -5634 2307 186 16 15 chr13 35837009 35837635 -66035534 + L1MB3 LINE L1 4703 6506 -175 * 3356 154 34 52 chr13 35837612 35837724 -66035445 + L1MB7 LINE L1 5994 6107 -575 1877 156 0 17 chr13 35837724 35838012 -66035157 + AluSx SINE Alu 5 287 -25 3356 154 34 52 chr13 35838012 35838585 -66034584 + L1MB7 LINE L1 6107 6666 -16 2197 117 3 0 chr13 35838853 35839151 -66034018 + AluSx SINE Alu 1 299 -13 285 195 81 11 chr13 35839229 35839316 -66033853 + L1MC5 LINE L1 7833 7925 -36 255 33 0 0 chr13 35839534 35839564 -66033605 - MLT1B LTR MaLR 0 390 361 1397 141 0 65 chr13 35839576 35839839 -66033330 - MLT1B LTR MaLR -144 246 1 1687 176 14 3 chr13 35839895 35840185 -66032984 - AluJb SINE Alu -19 293 1 281 127 0 73 chr13 35840540 35840595 -66032574 + MER117 DNA MER1_type 67 117 -80 472 221 47 116 chr13 35840641 35840831 -66032338 - L2 LINE L2 -6 3307 3131 2908 86 103 0 chr13 35840838 35841244 -66031925 - LTR7 LTR ERV1 -2 448 1 2438 96 48 13 chr13 35841244 35841621 -66031548 - HERVH LTR ERV1 0 7713 7324 1431 120 19 0 chr13 35841621 35841837 -66031332 - HERVH LTR ERV1 -1894 5819 5600 4623 131 0 1 chr13 35841838 35842501 -66030668 - HERVH LTR ERV1 -2564 5149 4488 5675 104 28 2 chr13 35842503 35843336 -66029833 - HERVH LTR ERV1 -3720 3993 3140 * 19416 101 14 30 chr13 35843315 35846359 -66026810 - HERVH LTR ERV1 -4718 2995 1 3130 78 64 0 chr13 35846361 35846782 -66026387 - LTR7 LTR ERV1 -2 448 1 2845 85 125 5 chr13 35847359 35847759 -66025410 - LTR7 LTR ERV1 -2 448 1 2474 93 0 0 chr13 35847930 35848242 -66024927 - AluSq SINE Alu -1 312 1 302 281 50 33 chr13 35848258 35848379 -66024790 + MER5A DNA MER1_type 2 124 -65 560 265 20 33 chr13 35848673 35848824 -66024345 - MER46C DNA MER2_type -1 337 189 1029 207 225 20 chr13 35848846 35849307 -66023862 + L1ME3A LINE L1 5601 6170 0 255 211 18 18 chr13 35849381 35849438 -66023731 - L2 LINE L2 -14 3299 3243 2021 141 0 7 chr13 35849451 35849748 -66023421 - AluJb SINE Alu -16 296 2 302 333 83 0 chr13 35851121 35851241 -66021928 - L2 LINE L2 -5 3308 3179 203 378 36 40 chr13 35851730 35851952 -66021217 - L2 LINE L2 -226 3046 2826 328 78 0 39 chr13 35852090 35852141 -66021028 + L1MB2 LINE L1 6121 6169 -2 1632 136 7 66 chr13 35852731 35853018 -66020151 - AluJo SINE Alu -19 293 24 2048 146 0 0 chr13 35853039 35853340 -66019829 - AluSx SINE Alu -11 301 1 202 229 0 0 chr13 35855238 35855286 -66017883 + A-rich Low_complexity Low_complexity 1 48 0 27 0 0 0 chr13 35855547 35855574 -66017595 + AT_rich Low_complexity Low_complexity 1 27 0 2487 87 0 0 chr13 35855620 35855932 -66017237 - AluSx SINE Alu 0 312 1 452 118 147 0 chr13 35856437 35856505 -66016664 + AluJ/FLAM SINE Alu 2 79 -233 180 278 19 56 chr13 35856688 35856796 -66016373 - L2 LINE L2 -167 3146 3043 2117 127 0 0 chr13 35856796 35857095 -66016074 - AluSx SINE Alu -13 299 1 1984 108 35 3 chr13 35857351 35857638 -66015531 + AluSp SINE Alu 1 296 -17 1188 170 0 0 chr13 35858449 35858631 -66014538 - AluJo SINE Alu -130 182 1 2039 123 10 17 chr13 35859018 35859318 -66013851 + AluSx SINE Alu 1 298 -14 1211 162 32 112 chr13 35859557 35859990 -66013179 - Charlie1b DNA MER1_type -2265 496 112 2218 123 0 0 chr13 35859990 35860290 -66012879 + AluSx SINE Alu 1 300 -12 1211 162 32 112 chr13 35860290 35860391 -66012778 - Charlie1b DNA MER1_type -2649 112 5 21 57 0 0 chr13 35861293 35861328 -66011841 + AT_rich Low_complexity Low_complexity 1 35 0 193 122 0 41 chr13 35862077 35862126 -66011043 + (GGGAGA)n Simple_repeat Simple_repeat 3 49 0 202 356 76 15 chr13 35862876 35863008 -66010161 - L2 LINE L2 -1 3312 3173 278 321 12 0 chr13 35863022 35863103 -66010066 - L2 LINE L2 -972 2342 2261 1218 160 10 15 chr13 35863419 35863625 -66009544 - AluJo SINE Alu -18 294 90 694 257 117 23 chr13 35863639 35863896 -66009273 + L2 LINE L2 3028 3308 -5 191 297 0 31 chr13 35864037 35864101 -66009068 + MIR SINE MIR 175 236 -26 1138 199 40 16 chr13 35864146 35864397 -66008772 + LTR8 LTR ERV1 1 257 -434 1151 208 59 109 chr13 35864404 35864955 -66008214 + LTR8 LTR ERV1 26 714 -13 365 191 206 8 chr13 35865140 35865266 -66007903 - MIR SINE MIR -77 185 35 1973 158 69 17 chr13 35865323 35865670 -66007499 - MLT1A1 LTR MaLR 0 365 1 270 239 0 0 chr13 35865996 35866067 -66007102 + (TA)n Simple_repeat Simple_repeat 2 72 0 1543 170 28 28 chr13 35866149 35866437 -66006732 + AluJb SINE Alu 1 288 -24 21 57 0 0 chr13 35866440 35866475 -66006694 + AT_rich Low_complexity Low_complexity 1 35 0 210 274 143 36 chr13 35866620 35866704 -66006465 + MIR SINE MIR 8 100 -162 2890 3 0 0 chr13 35866947 35867253 -66005916 + AluYa5 SINE Alu 1 306 -5 187 300 0 78 chr13 35868247 35868337 -66004832 + MIR SINE MIR 176 258 -4 1697 96 4 0 chr13 35868351 35868581 -66004588 + AluSx SINE Alu 53 283 -29 240 35 0 0 chr13 35868581 35868610 -66004559 + (CAAT)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr13 35869833 35869856 -66003313 + AT_rich Low_complexity Low_complexity 1 23 0 702 211 0 0 chr13 35869880 35870013 -66003156 - FLAM_C SINE Alu 0 133 1 377 165 12 59 chr13 35870070 35870155 -66003014 - HAL1 LINE L1 -107 2400 2320 970 175 57 64 chr13 35870261 35870541 -66002628 + L1ME1 LINE L1 3765 4042 -2104 1978 161 72 11 chr13 35870543 35870892 -66002277 + MLT1B LTR MaLR 1 370 -20 1192 221 88 16 chr13 35870948 35871323 -66001846 + L1ME1 LINE L1 4068 4469 -1677 3651 98 12 39 chr13 35871323 35871942 -66001227 + MER4B LTR ERV1 3 772 -7 5895 94 23 3 chr13 35871958 35872375 -66000794 - L1PB2 LINE L1 -35 6116 5709 2302 55 48 3 chr13 35872375 35872665 -66000504 - AluY SINE Alu -8 303 1 5895 94 23 3 chr13 35872665 35873124 -66000045 - L1PB2 LINE L1 -442 5709 5223 2560 226 38 27 chr13 35873139 35873852 -65999317 + L1ME1 LINE L1 4463 5183 -963 1013 186 46 5 chr13 35873852 35874031 -65999138 + MLT1A2 LTR MaLR 1 187 -187 968 171 0 57 chr13 35874031 35874207 -65998962 + LTR59 LTR ERV1 1 166 -431 1791 86 0 0 chr13 35874207 35874429 -65998740 + AluSq SINE Alu 1 222 -91 4259 65 73 39 chr13 35874434 35875022 -65998147 + LTR14B LTR ERVK 1 608 0 488 169 24 0 chr13 35875022 35875105 -65998064 + AluSg/x SINE Alu 217 301 -8 2544 117 42 70 chr13 35875109 35875563 -65997606 + LTR59 LTR ERV1 155 595 -2 1785 181 36 80 chr13 35875566 35875980 -65997189 + MSTD LTR MaLR 1 396 0 877 223 0 21 chr13 35875985 35876178 -65996991 + MLT1A2 LTR MaLR 186 374 0 3973 214 26 18 chr13 35876182 35876358 -65996811 + L1ME1 LINE L1 5186 5359 -975 2256 150 33 25 chr13 35876358 35876719 -65996450 - THE1B LTR MaLR 0 364 1 3973 214 26 18 chr13 35876719 35877522 -65995647 + L1ME1 LINE L1 5359 6333 -1 359 192 39 13 chr13 35878195 35878273 -65994896 + Tigger5 DNA MER2_type 1 80 -2243 312 161 16 16 chr13 35878277 35878339 -65994830 - Tigger5 DNA MER2_type -14 2309 2248 445 131 0 0 chr13 35878341 35878402 -65994767 + Tigger5 DNA MER2_type 2263 2323 0 2316 67 3 3 chr13 35879220 35879559 -65993610 - AluY SINE Alu 0 339 1 597 143 31 0 chr13 35879969 35880067 -65993102 - AluJb SINE Alu -6 306 206 2195 121 7 0 chr13 35880410 35880716 -65992453 + AluSx SINE Alu 3 310 -2 433 192 19 58 chr13 35880811 35880915 -65992254 + MLT1H1 LTR MaLR 1 100 -455 2021 177 25 83 chr13 35880981 35881526 -65991643 - MLT2B3 LTR ERVL -44 500 1 18777 75 6 5 chr13 35881931 35885238 -65987931 - L1PA7 LINE L1 -3 6151 2836 2265 83 7 10 chr13 35885238 35885540 -65987629 - AluSp SINE Alu -12 301 1 18777 75 6 5 chr13 35885540 35885626 -65987543 - L1PA7 LINE L1 -3318 2836 2752 1426 114 14 0 chr13 35885626 35885846 -65987323 + L1PA7 LINE L1 2516 2738 -3408 467 286 26 53 chr13 35885908 35886099 -65987070 + MLT1H1 LTR MaLR 105 292 -289 279 0 0 0 chr13 35886525 35886556 -65986613 + (TA)n Simple_repeat Simple_repeat 2 32 0 408 217 48 0 chr13 35886762 35886845 -65986324 - MER45A DNA AcHobo -2 176 90 4297 146 25 50 chr13 35886959 35887101 -65986068 + L1MB3 LINE L1 5254 5398 -785 2195 131 0 0 chr13 35887101 35887406 -65985763 + AluSx SINE Alu 1 305 -7 4297 146 25 50 chr13 35887406 35887469 -65985700 + L1MB3 LINE L1 5398 5461 -722 2097 139 13 0 chr13 35887469 35887771 -65985398 + AluSx SINE Alu 1 306 -6 4297 146 25 50 chr13 35887771 35888485 -65984684 + L1MB3 LINE L1 5461 6151 -32 1481 138 117 50 chr13 35888485 35888768 -65984401 + AluJb SINE Alu 1 302 0 315 359 20 31 chr13 35888780 35888975 -65984194 + LTR16B LTR ERVL 34 226 -238 261 293 150 0 chr13 35889123 35889263 -65983906 - MARNA DNA Mariner -164 422 262 2086 129 0 20 chr13 35889266 35889569 -65983600 + AluSx SINE Alu 1 297 -15 2339 93 0 0 chr13 35890026 35890316 -65982853 + AluSg SINE Alu 1 290 -20 899 45 0 75 chr13 35890388 35890521 -65982648 + AluY SINE Alu 188 310 -1 2069 110 3 29 chr13 35890577 35890886 -65982283 + AluSx SINE Alu 1 301 -11 565 180 66 114 chr13 35891198 35891415 -65981754 + L1MC5 LINE L1 7342 7539 -422 2032 135 0 13 chr13 35891415 35891718 -65981451 + AluSx SINE Alu 1 299 -13 565 180 66 114 chr13 35891718 35891833 -65981336 + L1MC5 LINE L1 7539 7658 -303 1004 83 15 8 chr13 35891833 35891966 -65981203 + AluSq/x SINE Alu 1 134 -178 326 176 19 32 chr13 35892111 35892238 -65980931 - L1M4 LINE L1 -2826 3320 3195 1679 166 0 18 chr13 35892238 35892521 -65980648 + AluJo SINE Alu 1 278 -34 204 40 0 0 chr13 35892521 35892546 -65980623 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 2023 114 139 25 chr13 35892598 35893002 -65980167 + LTR7 LTR ERV1 1 450 0 276 304 25 0 chr13 35893103 35893182 -65979987 + L2 LINE L2 3228 3308 -5 269 140 60 0 chr13 35893185 35893235 -65979934 - MIR SINE MIR -120 142 90 450 337 59 10 chr13 35894230 35894481 -65978688 - MIR SINE MIR 0 262 5 319 291 136 0 chr13 35894945 35895048 -65978121 - MIR3 SINE MIR -23 185 69 2523 53 0 0 chr13 35895062 35895362 -65977807 - AluY SINE Alu -11 300 1 327 279 88 14 chr13 35895441 35895588 -65977581 - L1MC4 LINE L1 -195 7847 7690 1800 230 32 32 chr13 35895885 35896442 -65976727 - L1ME3 LINE L1 -8 6154 5598 1029 169 0 33 chr13 35896475 35896658 -65976511 - FRAM SINE Alu 0 176 1 439 302 44 28 chr13 35896793 35896975 -65976194 - MER5A DNA MER1_type -1 188 4 325 230 97 97 chr13 35897104 35897300 -65975869 - LTR16A LTR ERVL -254 196 1 207 0 0 0 chr13 35898106 35898129 -65975040 + (TTA)n Simple_repeat Simple_repeat 3 25 0 437 202 57 65 chr13 35898405 35898434 -65974735 + L2 LINE L2 3191 3219 -94 2276 103 10 6 chr13 35898434 35898746 -65974423 - AluSq SINE Alu 0 313 1 437 202 57 65 chr13 35898746 35898840 -65974329 + L2 LINE L2 3219 3313 0 728 171 26 0 chr13 35899592 35899709 -65973460 - FLAM_A SINE Alu -9 124 5 2613 53 0 0 chr13 35900198 35900500 -65972669 - AluSg SINE Alu -8 302 1 2202 62 6 84 chr13 35900715 35901037 -65972132 - AluSp SINE Alu -16 297 1 690 324 145 28 chr13 35901343 35901539 -65971630 + L3 LINE CR1 199 371 -1206 1939 137 0 7 chr13 35901539 35901838 -65971331 - AluJb SINE Alu -13 299 3 690 324 145 28 chr13 35901838 35902178 -65970991 + L3 LINE CR1 371 798 -779 322 235 196 10 chr13 35902175 35902277 -65970892 + L2 LINE L2 3193 3313 0 * 198 0 0 0 chr13 35902377 35902399 -65970770 + (T)n Simple_repeat Simple_repeat 1 22 0 1058 285 166 9 chr13 35903114 35903809 -65969360 - L2 LINE L2 -33 3280 2476 653 104 87 0 chr13 35904320 35904435 -65968734 - L1MA4A LINE L1 -1 6302 6178 1990 144 7 0 chr13 35904438 35904722 -65968447 - AluSx SINE Alu -26 286 1 270 81 0 0 chr13 35905252 35905289 -65967880 + AluY SINE Alu 1 37 -266 2529 42 0 3 chr13 35905289 35905578 -65967591 + AluY SINE Alu 13 300 -11 6430 81 14 11 chr13 35907971 35908456 -65964713 + L1PA11 LINE L1 4883 5365 -809 2258 116 0 0 chr13 35908456 35908757 -65964412 + AluSx SINE Alu 1 301 -11 6430 81 14 11 chr13 35908757 35909561 -65963608 + L1PA11 LINE L1 5365 6174 0 1137 114 23 11 chr13 35909984 35910159 -65963010 - AluSg/x SINE Alu -1 309 133 2291 78 7 29 chr13 35910285 35910592 -65962577 + AluY SINE Alu 1 300 -11 2576 61 0 0 chr13 35910998 35911309 -65961860 + AluY SINE Alu 1 311 0 23 33 0 0 chr13 35911644 35911674 -65961495 + AT_rich Low_complexity Low_complexity 1 30 0 413 237 169 63 chr13 35911717 35912066 -65961103 - MER77 LTR ERV1 -36 569 302 260 111 22 0 chr13 35912144 35912189 -65960980 + GA-rich Low_complexity Low_complexity 2 47 0 2222 184 63 10 chr13 35912294 35912783 -65960386 - L1MB2 LINE L1 -107 6064 5550 1084 135 0 0 chr13 35912795 35912951 -65960218 - AluSg/x SINE Alu -23 287 132 2209 103 13 3 chr13 35912951 35913253 -65959916 - AluSx SINE Alu -7 305 1 5084 197 19 41 chr13 35913255 35914345 -65958824 - L1MB2 LINE L1 -608 5563 4503 2400 88 3 0 chr13 35914345 35914652 -65958517 - AluY SINE Alu -3 308 1 5084 197 19 41 chr13 35914652 35915131 -65958038 - L1MB2 LINE L1 -1668 4503 4015 12686 26 3 0 chr13 35915140 35917405 -65955764 - L1PA7 LINE L1 -2 6152 3879 721 123 0 0 chr13 35917659 35917765 -65955404 - AluJb SINE Alu -8 304 199 334 311 15 53 chr13 35917811 35917943 -65955226 + L2 LINE L2 3138 3264 -8 493 266 135 60 chr13 35918082 35918518 -65954651 - MLT1H LTR MaLR 0 549 81 2254 69 0 4 chr13 35918766 35919040 -65954129 - AluY SINE Alu -20 291 19 201 300 91 45 chr13 35919150 35919260 -65953909 + MIR SINE MIR 118 232 -30 2075 111 0 34 chr13 35919335 35919633 -65953536 - AluSg SINE Alu -22 288 1 720 278 69 33 chr13 35919825 35920131 -65953038 + MLT1I LTR MaLR 93 409 0 342 229 143 57 chr13 35920635 35920775 -65952394 - L1ME4a LINE L1 -3 6118 5967 191 146 24 0 chr13 35920903 35920944 -65952225 + CT-rich Low_complexity Low_complexity 1 42 0 2208 144 19 16 chr13 35921089 35921463 -65951706 - THE1C LTR MaLR 0 375 1 2136 109 0 10 chr13 35921585 35921878 -65951291 - AluSc SINE Alu -19 290 1 181 345 17 0 chr13 35921993 35922051 -65951118 + L2 LINE L2 333 391 -2923 1228 215 101 24 chr13 35922201 35922615 -65950554 - L1MD2 LINE L1 -253 6106 5661 1051 298 27 33 chr13 35922615 35922935 -65950234 - L1MC4 LINE L1 -1095 6947 6629 2295 101 0 3 chr13 35922935 35923242 -65949927 - AluSx SINE Alu -6 306 1 1051 298 27 33 chr13 35923242 35923404 -65949765 - L1MC4 LINE L1 -1413 6629 6468 2063 171 97 7 chr13 35923405 35923827 -65949342 - LOR1b LTR ERV1 -1 460 1 594 154 0 0 chr13 35923827 35923918 -65949251 - LOR1b-int LTR ERV1 0 8120 8030 * 1475 94 14 84 chr13 35923917 35924192 -65948977 - LOR1-int LTR ERV1 -2056 6064 5809 * 9192 106 32 21 chr13 35924191 35925789 -65947380 - LOR1-int LTR ERV1 -2596 5524 3908 3466 121 66 19 chr13 35925783 35927023 -65946146 - LOR1-int LTR ERV1 -4798 3322 1984 * 276 30 0 0 chr13 35927072 35927105 -65946064 + (TCC)n Simple_repeat Simple_repeat 1 33 0 198 345 56 28 chr13 35927333 35927475 -65945694 + MER5A DNA MER1_type 16 161 -28 295 250 40 13 chr13 35927516 35927592 -65945577 + L2 LINE L2 3192 3269 -3 769 145 15 8 chr13 35927725 35927856 -65945313 - AluSq/x SINE Alu -180 132 1 23 33 0 0 chr13 35927859 35927889 -65945280 + AT_rich Low_complexity Low_complexity 1 30 0 311 164 55 0 chr13 35927966 35928021 -65945148 + MIR SINE MIR 94 151 -111 882 202 66 10 chr13 35928600 35928798 -65944371 - MER3 DNA MER1_type 0 209 1 312 179 95 0 chr13 35928863 35928947 -65944222 - L1MC4 LINE L1 -1891 5917 5826 2018 133 0 26 chr13 35929079 35929387 -65943782 - AluSx SINE Alu -12 300 1 444 311 63 30 chr13 35929745 35929891 -65943278 + L1M4 LINE L1 2661 2801 -3345 35 0 0 0 chr13 35929891 35929926 -65943243 + AT_rich Low_complexity Low_complexity 1 35 0 1633 171 10 24 chr13 35929920 35930212 -65942957 - AluJo SINE Alu -24 288 1 444 311 63 30 chr13 35930212 35930306 -65942863 + L1M4 LINE L1 3087 2939 -3207 410 138 0 12 chr13 35930370 35930450 -65942719 + MADE1 DNA Mariner 1 79 -1 1570 208 211 69 chr13 35930828 35930884 -65942285 - L1MC4 LINE L1 -151 7891 7844 2136 109 0 0 chr13 35930884 35931167 -65942002 - AluY SINE Alu -16 295 13 1570 208 211 69 chr13 35931167 35931948 -65941221 - L1MC4 LINE L1 -198 7844 6935 44 20 0 0 chr13 35931948 35931999 -65941170 + AT_rich Low_complexity Low_complexity 1 51 0 2441 59 0 0 chr13 35932079 35932369 -65940800 - AluY SINE Alu -20 291 2 909 363 50 21 chr13 35932986 35933747 -65939422 + L2 LINE L2 925 1707 -1607 267 295 47 54 chr13 35933894 35934023 -65939146 + L2 LINE L2 3133 3260 -12 487 161 0 21 chr13 35934298 35934391 -65938778 + THE1B LTR MaLR 1 91 -273 1565 97 0 0 chr13 35934558 35934754 -65938415 - AluSg SINE Alu -114 196 1 1075 152 184 8 chr13 35934876 35935132 -65938037 - L1MD1 LINE L1 -22 6220 5920 233 116 0 23 chr13 35935244 35935287 -65937882 + (TCTCCC)n Simple_repeat Simple_repeat 6 47 0 9068 115 87 7 chr13 35935306 35936952 -65936217 - LOR1b-int LTR ERV1 -6141 1979 203 1873 184 24 3 chr13 35936956 35937325 -65935844 - LOR1b-int LTR ERV1 -7743 377 1 2467 143 40 22 chr13 35937325 35937778 -65935391 - LOR1b LTR ERV1 0 461 1 780 218 28 38 chr13 35937820 35938031 -65935138 - MER20 DNA MER1_type -1 218 10 566 234 38 0 chr13 35938074 35938232 -65934937 - L1MEc LINE L1 -4666 1730 1567 909 247 101 25 chr13 35938246 35938809 -65934360 - L1MEc LINE L1 -4981 1224 619 270 298 0 0 chr13 35938840 35938924 -65934245 - L2 LINE L2 -407 2906 2823 * 492 227 0 9 chr13 35938918 35939028 -65934141 - L2 LINE L2 -1416 1898 1790 544 193 47 115 chr13 35939042 35939194 -65933975 - MER58C DNA MER1_type -2240 180 42 1998 166 0 0 chr13 35939194 35939496 -65933673 + AluSx SINE Alu 1 302 -10 544 193 47 115 chr13 35939496 35939535 -65933634 - MER58C DNA MER1_type -2378 42 2 492 247 127 67 chr13 35939586 35939853 -65933316 - L2 LINE L2 -1519 1795 1513 27 0 0 0 chr13 35939860 35939887 -65933282 + AT_rich Low_complexity Low_complexity 1 27 0 36 94 0 0 chr13 35940572 35940678 -65932491 + AT_rich Low_complexity Low_complexity 1 106 0 236 266 55 9 chr13 35940682 35940791 -65932378 - L1MD1 LINE L1 -236 5885 5772 199 407 37 19 chr13 35940972 35941080 -65932089 + L2 LINE L2 3151 3260 -12 21 36 0 0 chr13 35941129 35941157 -65932012 + AT_rich Low_complexity Low_complexity 1 28 0 390 294 131 31 chr13 35942339 35942689 -65930480 - L2 LINE L2 -1158 2156 1772 225 379 76 11 chr13 35943419 35943696 -65929473 - L2 LINE L2 -2390 924 630 856 138 83 22 chr13 35944224 35944405 -65928764 - LTR47A LTR ERVL 0 452 261 1311 173 9 35 chr13 35945870 35946210 -65926959 - MER31A LTR ERV1 -1 484 37 606 131 0 0 chr13 35946210 35946294 -65926875 + FLAM_C SINE Alu 37 120 -23 198 167 0 0 chr13 35946300 35946336 -65926833 + (CACG)n Simple_repeat Simple_repeat 3 38 0 253 0 0 0 chr13 35946398 35946428 -65926741 - MER67A LTR ERV1 -513 30 1 1512 201 92 127 chr13 35946448 35947393 -65925776 - L1MC5 LINE L1 -111 7850 6952 278 50 25 0 chr13 35947393 35947433 -65925736 + (TG)n Simple_repeat Simple_repeat 1 41 0 1512 201 92 127 chr13 35947433 35947818 -65925351 - L1MC5 LINE L1 -1009 6952 6555 3622 149 60 6 chr13 35948340 35949002 -65924167 - MER44D DNA MER2_type 0 705 8 387 0 0 0 chr13 35949007 35949050 -65924119 + (TG)n Simple_repeat Simple_repeat 2 44 0 2105 142 7 0 chr13 35949249 35949420 -65923749 - AluSx SINE Alu -8 304 129 2234 109 13 0 chr13 35949420 35949723 -65923446 - AluSq SINE Alu -6 307 1 2105 142 7 0 chr13 35949723 35949853 -65923316 - AluSx SINE Alu -183 129 1 440 274 155 23 chr13 35950388 35950607 -65922562 - MIR SINE MIR -7 255 8 22 35 0 0 chr13 35950897 35950926 -65922243 + AT_rich Low_complexity Low_complexity 1 29 0 291 54 0 0 chr13 35950926 35950963 -65922206 + (CA)n Simple_repeat Simple_repeat 2 38 0 1539 179 3 69 chr13 35952160 35952478 -65920691 - AluJo SINE Alu -15 297 1 186 350 33 0 chr13 35952571 35952631 -65920538 - MIR SINE MIR -193 69 8 2075 86 0 0 chr13 35952690 35952958 -65920211 - AluY SINE Alu -8 303 36 205 211 0 0 chr13 35953029 35953067 -65920102 + (TA)n Simple_repeat Simple_repeat 2 39 0 407 247 24 0 chr13 35953224 35953309 -65919860 + MIR SINE MIR 2 88 -174 1328 161 18 5 chr13 35953313 35953530 -65919639 - AluJo SINE Alu -8 304 85 2304 86 0 17 chr13 35953752 35954054 -65919115 + AluSq SINE Alu 1 297 -16 1252 163 303 57 chr13 35954242 35954697 -65918472 - MLT1F1 LTR MaLR 0 567 1 364 278 105 25 chr13 35954894 35955056 -65918113 - L2 LINE L2 -1292 2022 1848 2225 88 7 16 chr13 35955474 35955781 -65917388 + AluY SINE Alu 1 304 -7 1125 88 27 0 chr13 35955968 35956115 -65917054 + AluSq/x SINE Alu 1 151 -161 1212 269 83 44 chr13 35956116 35956574 -65916595 + MLT1E2 LTR MaLR 149 626 0 675 244 115 11 chr13 35956652 35956922 -65916247 - MER5C DNA MER1_type -26 298 1 1895 107 22 88 chr13 35957220 35957424 -65915745 - THE1B LTR MaLR 0 364 167 2060 109 7 23 chr13 35957424 35957726 -65915443 + AluSx SINE Alu 10 306 -6 1895 107 22 88 chr13 35957726 35957883 -65915286 - THE1B LTR MaLR -197 167 1 631 269 88 36 chr13 35958146 35958621 -65914548 - L1ME4a LINE L1 -15 6106 5607 198 71 0 0 chr13 35958777 35958805 -65914364 + (TG)n Simple_repeat Simple_repeat 2 29 0 2558 55 0 13 chr13 35958828 35959138 -65914031 - AluSg SINE Alu -4 306 1 3343 57 11 2 chr13 35959750 35960186 -65912983 + L1PA7 LINE L1 5715 6154 0 1747 180 6 6 chr13 35960391 35960702 -65912467 + AluJb SINE Alu 1 311 -1 2045 139 33 0 chr13 35961236 35961538 -65911631 - AluSx SINE Alu 0 312 1 900 134 0 35 chr13 35962052 35962194 -65910975 + FLAM_C SINE Alu 1 137 -6 232 159 0 0 chr13 35962204 35962248 -65910921 + MER77 LTR ERV1 278 321 -284 433 320 50 70 chr13 35962248 35962651 -65910518 + L1 LINE L1 9 403 -5488 1388 150 35 0 chr13 35962758 35962985 -65910184 - MER46A DNA MER2_type 0 236 2 2805 214 76 8 chr13 35962989 35963918 -65909251 + L1 LINE L1 2888 3880 -2090 * 7100 78 11 7 chr13 35963915 35964992 -65908177 + L1P LINE L1 4303 5383 -763 2938 235 43 25 chr13 35965102 35965226 -65907943 - L1ME4a LINE L1 -816 5330 5210 1950 138 27 7 chr13 35965226 35965523 -65907646 - AluSx SINE Alu -9 303 1 2938 235 43 25 chr13 35965523 35966496 -65906673 - L1ME4a LINE L1 -936 5210 4214 2324 95 117 22 chr13 35966499 35966908 -65906261 + LTR7 LTR ERV1 1 448 -2 1926 161 15 42 chr13 35966923 35967333 -65905836 - MSTB1 LTR MaLR -33 399 1 1499 210 47 24 chr13 35967335 35967637 -65905532 - L1ME4a LINE L1 -1922 4224 3931 2324 112 3 0 chr13 35967637 35967941 -65905228 - AluSp SINE Alu -8 305 1 1703 186 0 26 chr13 35967943 35968249 -65904920 - AluJo SINE Alu -14 298 1 1499 210 47 24 chr13 35968249 35968367 -65904802 - L1ME4a LINE L1 -2215 3931 3791 460 248 113 14 chr13 35969103 35969244 -65903925 + MER5A DNA MER1_type 35 189 0 3898 80 58 41 chr13 35969971 35970561 -65902608 - MER4A LTR ERV1 0 600 1 2458 60 3 0 chr13 35971642 35971943 -65901226 + AluY SINE Alu 1 302 -9 463 254 62 31 chr13 35972190 35972320 -65900849 - L2 LINE L2 0 3272 3139 375 298 43 0 chr13 35972438 35972532 -65900637 - L2 LINE L2 -8 3305 3208 204 40 0 0 chr13 35972875 35972900 -65900269 + (TTCCC)n Simple_repeat Simple_repeat 2 26 0 687 166 35 62 chr13 35972903 35973156 -65900013 - FLAM_A SINE Alu 0 250 2 434 189 72 36 chr13 35973161 35973272 -65899897 - L2 LINE L2 -2 3311 3197 661 332 33 26 chr13 35973287 35973558 -65899611 - L3 LINE CR1 -85 1492 1220 411 275 132 6 chr13 35973735 35973902 -65899267 - MIR SINE MIR -55 207 20 959 154 0 0 chr13 35973917 35974060 -65899109 - FLAM_C SINE Alu 0 143 1 197 95 0 48 chr13 35974319 35974361 -65898808 + (TTTTC)n Simple_repeat Simple_repeat 5 44 0 2496 142 26 19 chr13 35974675 35975104 -65898065 + MSTB1 LTR MaLR 1 432 0 634 243 16 57 chr13 35976585 35976832 -65896337 - L1MC4 LINE L1 -2 8040 7804 879 240 172 75 chr13 35978069 35978739 -65894430 - L1MC4 LINE L1 -214 7828 7077 441 12 107 155 chr13 35978739 35978794 -65894375 - MADE1 DNA Mariner 0 80 29 2563 51 0 0 chr13 35978794 35979089 -65894080 - AluY SINE Alu -16 295 1 441 12 107 155 chr13 35979089 35979117 -65894052 - MADE1 DNA Mariner -51 29 1 879 240 172 75 chr13 35979117 35979191 -65893978 - L1MC4 LINE L1 -965 7077 7012 1254 75 0 70 chr13 35979236 35979437 -65893732 - L1PB1 LINE L1 0 6151 5965 4843 85 27 11 chr13 35979437 35980187 -65892982 - L1PB1 LINE L1 -133 6734 5973 1145 148 46 60 chr13 35980189 35980406 -65892763 - AluSg/x SINE Alu -16 294 81 11661 199 78 19 chr13 35980406 35980766 -65892403 - L1PB1 LINE L1 -895 5967 5630 2579 65 0 0 chr13 35980766 35981072 -65892097 - AluY SINE Alu -5 306 1 11661 199 78 19 chr13 35981072 35981708 -65891461 - L1PB1 LINE L1 -1232 5630 5033 1938 156 0 0 chr13 35981708 35982016 -65891153 - AluSx SINE Alu 0 308 1 11661 199 78 19 chr13 35982016 35982941 -65890228 - L1PB1 LINE L1 -1829 5033 4164 185 0 40 0 chr13 35982941 35982966 -65890203 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 11661 199 78 19 chr13 35982966 35983850 -65889319 - L1PB1 LINE L1 -2698 4164 2993 2011 119 25 7 chr13 35983850 35984135 -65889034 - AluSx SINE Alu -22 290 1 1392 121 5 0 chr13 35984294 35984484 -65888685 + AluSp SINE Alu 115 305 -8 16784 114 106 6 chr13 35984484 35987175 -65885994 - L1PB1 LINE L1 -3904 2959 1 3469 224 86 91 chr13 35987182 35988850 -65884319 - L1MC4a LINE L1 -873 6935 5276 732 286 41 39 chr13 35988886 35988960 -65884209 - L1MC4a LINE L1 -904 5242 5170 1769 168 3 3 chr13 35988960 35989245 -65883924 - AluJb SINE Alu -27 285 1 732 286 41 39 chr13 35989245 35989677 -65883492 - L1MC4a LINE L1 -976 5170 4735 37274 98 10 9 chr13 35989694 35995836 -65877333 - L1PA6 LINE L1 -1 6153 11 2234 138 0 0 chr13 35995919 35996230 -65876939 - AluSx SINE Alu -1 311 1 1838 180 0 7 chr13 35996327 35996632 -65876537 - AluJb SINE Alu -8 304 2 552 194 15 179 chr13 35996812 35996870 -65876299 + MER5B DNA MER1_type 8 74 -104 911 144 0 8 chr13 35996870 35997002 -65876167 + FLAM_C SINE Alu 1 131 -2 552 194 15 179 chr13 35997002 35997139 -65876030 + MER5B DNA MER1_type 74 171 -7 1554 180 24 20 chr13 35997921 35998215 -65874954 - AluJo SINE Alu -17 295 1 291 175 0 0 chr13 35998232 35998289 -65874880 + (TATG)n Simple_repeat Simple_repeat 2 58 0 198 347 116 0 chr13 35998998 35999093 -65874076 + L3 LINE CR1 1078 1183 -394 1526 136 6 196 chr13 35999094 35999578 -65873591 - MER57A LTR ERV1 0 403 12 220 263 30 61 chr13 35999736 35999835 -65873334 + L3 LINE CR1 1401 1496 -81 2598 68 0 0 chr13 35999971 36000281 -65872888 + AluY SINE Alu 1 310 -1 660 319 22 0 chr13 36001262 36001444 -65871725 - MIR SINE MIR -16 246 61 272 207 86 159 chr13 36001642 36002038 -65871131 + MLT1K LTR MaLR 217 583 -5 10212 76 6 2 chr13 36002448 36004515 -65868654 - L1PA7 LINE L1 0 6154 4079 506 313 121 0 chr13 36004632 36004814 -65868355 + MIR SINE MIR 59 262 0 2361 73 0 3 chr13 36004997 36005298 -65867871 + AluY SINE Alu 1 300 -11 515 92 0 0 chr13 36005326 36005402 -65867767 - L1PA11 LINE L1 0 6174 6099 229 156 0 44 chr13 36005454 36005499 -65867670 - MER3 DNA MER1_type -155 54 12 1528 212 115 15 chr13 36005499 36005909 -65867260 - L1ME3 LINE L1 -146 6016 5564 348 296 91 8 chr13 36007011 36007143 -65866026 + MIR SINE MIR 40 182 -80 378 224 128 32 chr13 36007292 36007417 -65865752 - LTR67 LTR ERVL -7 550 414 1730 213 136 5 chr13 36007725 36008138 -65865031 - MLT1C LTR MaLR 0 467 1 1712 125 80 21 chr13 36008157 36008446 -65864723 - AluSx SINE Alu -6 306 1 50 31 0 0 chr13 36008572 36008636 -65864533 + AT_rich Low_complexity Low_complexity 1 64 0 363 245 117 42 chr13 36008685 36008836 -65864333 - MIR3 SINE MIR -21 187 22 1593 188 74 56 chr13 36010228 36010606 -65862563 - MLT1B LTR MaLR -5 385 1 233 284 49 12 chr13 36010640 36010721 -65862448 - MIR3 SINE MIR -20 188 105 2227 100 3 3 chr13 36010728 36011019 -65862150 - AluSx SINE Alu -21 291 1 307 299 95 54 chr13 36011455 36011506 -65861663 + L2 LINE L2 3117 3164 -108 3229 174 30 2 chr13 36011506 36012047 -65861122 - MER74A LTR ERVL -2 556 1 307 299 95 54 chr13 36012047 36012142 -65861027 + L2 LINE L2 3164 3269 -3 2336 111 0 0 chr13 36012290 36012588 -65860581 - AluSx SINE Alu -14 298 1 1349 119 44 9 chr13 36012636 36012862 -65860307 - L1MA5A LINE L1 0 6297 6064 1993 139 10 0 chr13 36013946 36014234 -65858935 - AluSx SINE Alu -20 292 2 2530 135 22 24 chr13 36014235 36014266 -65858903 - L1MC1 LINE L1 -479 5854 5824 2389 98 0 0 chr13 36014266 36014572 -65858597 - AluSg SINE Alu -4 306 1 2530 135 22 24 chr13 36014572 36014954 -65858215 - L1MC1 LINE L1 -509 5824 5442 688 300 46 29 chr13 36015545 36015895 -65857274 - L2 LINE L2 -601 2713 2358 1884 107 19 15 chr13 36016742 36017013 -65856156 + THE1B LTR MaLR 1 272 -92 432 0 0 0 chr13 36017030 36017078 -65856091 + (CA)n Simple_repeat Simple_repeat 2 49 0 219 36 0 0 chr13 36017881 36017909 -65855260 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2470 51 0 0 chr13 36018478 36018773 -65854396 + AluY SINE Alu 1 295 -16 1378 210 79 19 chr13 36020935 36021302 -65851867 + L1MC4 LINE L1 7653 8041 -1 2464 175 76 12 chr13 36021995 36022480 -65850689 + MER34 LTR ERV1 27 542 0 793 184 8 0 chr13 36022601 36022726 -65850443 - FLAM_C SINE Alu -6 127 2 1161 233 51 34 chr13 36023204 36023560 -65849609 + LTR16B LTR ERVL 3 364 -100 483 158 14 7 chr13 36023650 36023739 -65849430 - MER72 LTR ERV1 -42 881 586 1065 149 55 11 chr13 36024839 36025020 -65848149 + MER5A DNA MER1_type 1 189 0 1890 151 3 25 chr13 36025247 36025566 -65847603 - AluSx SINE Alu 0 312 1 327 269 123 36 chr13 36026532 36026751 -65846418 + LTR40c LTR ERVL 169 406 -59 2361 180 83 7 chr13 36026962 36027395 -65845774 + MER82 DNA MER2_type 188 653 0 1526 288 59 43 chr13 36027916 36028262 -65844907 - L1MEc LINE L1 -4973 1423 1084 2214 147 134 11 chr13 36028262 36028642 -65844527 + MSTA LTR MaLR 2 428 0 1526 288 59 43 chr13 36028642 36029313 -65843856 - L1MEc LINE L1 -5312 1084 390 2002 149 57 34 chr13 36029317 36029666 -65843503 + THE1B LTR MaLR 8 364 0 12517 91 10 8 chr13 36029666 36031242 -65841927 + THE1B-int LTR MaLR 1 1580 0 2161 132 47 47 chr13 36031242 36031606 -65841563 + THE1B LTR MaLR 1 364 0 638 299 44 57 chr13 36031625 36031943 -65841226 - L1MEc LINE L1 -6048 348 35 1750 135 58 0 chr13 36032178 36032438 -65840731 + AluSx SINE Alu 1 275 -37 201 178 44 0 chr13 36033034 36033079 -65840090 - L2 LINE L2 -107 3206 3160 272 330 102 0 chr13 36033170 36033258 -65839911 + MER5A DNA MER1_type 13 109 -80 425 157 0 0 chr13 36033430 36033500 -65839669 - MLT1D LTR MaLR -46 459 390 800 189 0 7 chr13 36033500 36033648 -65839521 - MLT2A2 LTR ERVL 0 453 307 1024 199 0 17 chr13 36033806 36033987 -65839182 - MER5B DNA MER1_type 0 178 1 399 21 0 0 chr13 36033994 36034042 -65839127 + (CA)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 36034549 36034578 -65838591 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr13 36035457 36035477 -65837692 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1883 172 0 10 chr13 36035792 36036106 -65837063 + AluJb SINE Alu 2 312 0 2430 74 0 13 chr13 36036876 36037188 -65835981 + AluY SINE Alu 1 308 -3 219 167 0 0 chr13 36038233 36038275 -65834894 + GA-rich Low_complexity Low_complexity 2 43 0 10447 166 33 46 chr13 36038654 36039009 -65834160 - L1PB4 LINE L1 0 6156 5798 2475 69 7 0 chr13 36039009 36039313 -65833856 - AluSq SINE Alu -7 306 1 10447 166 33 46 chr13 36039313 36039539 -65833630 - L1PB4 LINE L1 -358 5798 5570 2375 89 0 3 chr13 36039539 36039841 -65833328 - AluSx SINE Alu -2 310 10 10447 166 33 46 chr13 36039841 36040058 -65833111 - L1PB4 LINE L1 -586 5570 5352 2407 58 7 16 chr13 36040058 36040368 -65832801 - AluY SINE Alu -4 307 1 10447 166 33 46 chr13 36040368 36040858 -65832311 - L1PB4 LINE L1 -804 5352 4857 1644 66 0 0 chr13 36040858 36041055 -65832114 + L1PA7 LINE L1 5956 6152 -2 10447 166 33 46 chr13 36041055 36043021 -65830148 - L1PB4 LINE L1 -1299 4857 2975 34 65 0 0 chr13 36043088 36043150 -65830019 + AT_rich Low_complexity Low_complexity 1 62 0 1657 273 71 23 chr13 36043248 36043917 -65829252 - L1MC4a LINE L1 -747 5399 5221 562 209 72 43 chr13 36044870 36045009 -65828160 + MLT1F1 LTR MaLR 29 171 -396 295 198 35 48 chr13 36045434 36045569 -65827600 - LTR16A1 LTR ERVL 0 457 360 460 271 15 70 chr13 36046541 36046740 -65826429 + MER5A DNA MER1_type 1 188 -1 1683 182 10 7 chr13 36047700 36047997 -65825172 + AluJb SINE Alu 1 298 -14 1461 199 57 3 chr13 36048011 36048293 -65824876 + AluJo SINE Alu 6 302 -10 192 77 0 0 chr13 36048583 36048609 -65824560 + (TG)n Simple_repeat Simple_repeat 1 26 0 1773 203 39 107 chr13 36049478 36049575 -65823594 - MLT1D LTR MaLR 0 505 403 1963 141 0 4 chr13 36049575 36049852 -65823317 - AluSx SINE Alu -23 289 14 1773 203 39 107 chr13 36049852 36050295 -65822874 - MLT1D LTR MaLR -102 403 2 266 322 141 8 chr13 36051419 36051540 -65821629 - L2 LINE L2 0 3272 3136 24 0 0 0 chr13 36052607 36052631 -65820538 + AT_rich Low_complexity Low_complexity 1 24 0 389 132 0 0 chr13 36052869 36052922 -65820247 - MER63 DNA MER1_type -325 737 685 5894 168 12 28 chr13 36053195 36054075 -65819094 + L1PB1 LINE L1 4027 4919 -1232 2111 116 3 0 chr13 36054075 36054360 -65818809 + AluSq SINE Alu 1 286 -27 5894 168 12 28 chr13 36054360 36054880 -65818289 + L1PB1 LINE L1 4919 5445 -706 2582 39 0 19 chr13 36054880 36055188 -65817981 + L1PA5 LINE L1 5846 6147 -7 5894 168 12 28 chr13 36055188 36055921 -65817248 + L1PB1 LINE L1 5445 6128 -23 1200 156 10 0 chr13 36055921 36056113 -65817056 - Tigger1 DNA MER2_type -2222 196 3 485 306 50 0 chr13 36056615 36056774 -65816395 + MIR SINE MIR 33 199 -63 291 236 90 0 chr13 36056774 36056863 -65816306 - MER5C DNA MER1_type -1 323 227 513 204 19 0 chr13 36056887 36056995 -65816174 - MER5C DNA MER1_type -212 112 3 287 242 0 0 chr13 36057002 36057068 -65816101 + MIR SINE MIR 196 261 -1 1218 207 56 77 chr13 36057128 36057771 -65815398 - MER76 LTR ERV 0 688 3 1347 13 0 0 chr13 36057842 36057991 -65815178 - AluYa5 SINE Alu -15 296 148 1875 150 0 52 chr13 36058415 36058741 -65814428 - AluSx SINE Alu 0 312 4 1724 204 19 25 chr13 36059030 36059397 -65813772 - MLT1A1 LTR MaLR 0 365 1 2244 90 3 40 chr13 36059426 36059747 -65813422 + AluY SINE Alu 2 310 -1 266 26 53 0 chr13 36059753 36059791 -65813378 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 3543 138 41 2 chr13 36060337 36060901 -65812268 + Tigger1 DNA MER2_type 171 756 -1662 1816 137 16 36 chr13 36060876 36061182 -65811987 + Tigger1 DNA MER2_type 2119 2418 0 * 690 255 77 0 chr13 36061879 36062075 -65811094 + LTR16C LTR ERVL 280 490 -1 692 193 104 35 chr13 36063635 36063837 -65809332 + MIR SINE MIR 20 235 -27 234 242 100 58 chr13 36063933 36063963 -65809206 - L1M3 LINE L1 -252 5928 5899 622 254 53 25 chr13 36063963 36064207 -65808962 - L1MC4a LINE L1 -1916 5892 5642 245 176 39 0 chr13 36064212 36064263 -65808906 - L1MC4a LINE L1 -526 5595 5543 2373 97 0 0 chr13 36064469 36064769 -65808400 + AluSg SINE Alu 1 300 -10 23 0 0 0 chr13 36065392 36065415 -65807754 + AT_rich Low_complexity Low_complexity 1 23 0 203 211 70 56 chr13 36065658 36065729 -65807440 + MIR SINE MIR 12 83 -179 285 252 231 28 chr13 36065968 36066111 -65807058 - MIR SINE MIR -13 249 78 431 189 28 47 chr13 36067371 36067477 -65805692 + MIR SINE MIR 159 262 0 1705 96 137 30 chr13 36067496 36068006 -65805163 - MER51A LTR ERV1 0 657 1 228 278 130 10 chr13 36068037 36068188 -65804981 - MIR SINE MIR -3 259 23 630 155 113 35 chr13 36068413 36068555 -65804614 + MER5B DNA MER1_type 1 153 -25 460 289 89 0 chr13 36068591 36068726 -65804443 - MER5B DNA MER1_type -31 147 1 2180 112 0 0 chr13 36068770 36069064 -65804105 - AluSx SINE Alu -18 294 1 2269 123 0 3 chr13 36069205 36069513 -65803656 + AluSx SINE Alu 1 307 -5 344 314 121 0 chr13 36070087 36070227 -65802942 + MIR SINE MIR 70 226 -36 650 157 0 0 chr13 36071542 36071644 -65801525 - MER45A DNA AcHobo 0 178 77 1532 145 4 0 chr13 36072192 36072420 -65800749 + Tigger3(Golem) DNA MER2_type 2801 3029 0 1643 190 31 0 chr13 36072794 36073083 -65800086 - AluJo SINE Alu -14 298 1 249 83 0 0 chr13 36073658 36073694 -65799475 + (TC)n Simple_repeat Simple_repeat 1 36 0 816 208 35 98 chr13 36075722 36075977 -65797192 + MIR SINE MIR 23 261 -1 2342 100 0 0 chr13 36076643 36076942 -65796227 - AluSg SINE Alu -11 299 1 326 301 11 11 chr13 36077359 36077452 -65795717 - LTR16C LTR ERVL -134 357 265 300 216 372 74 chr13 36077830 36078203 -65794966 - L2 LINE L2 -1044 2270 2010 2675 121 8 3 chr13 36078203 36078574 -65794595 + THE1C LTR MaLR 1 373 -2 300 216 372 74 chr13 36078574 36078635 -65794534 - L2 LINE L2 -1304 2010 1706 380 250 196 20 chr13 36079072 36079220 -65793949 - MIR SINE MIR -63 199 26 1919 98 39 0 chr13 36079280 36079536 -65793633 - L1PA16 LINE L1 0 6166 5901 2952 93 3 3 chr13 36079908 36080272 -65792897 - THE1B LTR MaLR 0 364 1 1273 284 98 5 chr13 36080682 36081070 -65792099 - LTR16C LTR ERVL 0 491 68 663 187 39 39 chr13 36081649 36081804 -65791365 + MER3 DNA MER1_type 52 206 -3 833 216 129 87 chr13 36082124 36082433 -65790736 + LTR41 LTR ERVL 372 701 -72 2373 94 0 3 chr13 36082433 36082742 -65790427 - AluSg SINE Alu -2 308 1 833 216 129 87 chr13 36082742 36082812 -65790357 + LTR41 LTR ERVL 701 767 -6 2222 120 0 0 chr13 36082929 36083229 -65789940 + AluY SINE Alu 1 300 -11 522 221 53 15 chr13 36083890 36084021 -65789148 - MIR SINE MIR -126 136 1 1460 155 136 124 chr13 36084087 36084506 -65788663 - MSTA LTR MaLR -4 424 1 295 302 141 13 chr13 36085496 36085645 -65787524 - MIR SINE MIR -8 254 87 374 235 21 18 chr13 36086122 36086237 -65786932 + MLT1L LTR MaLR 478 615 0 21 0 0 0 chr13 36088202 36088223 -65784946 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 36088496 36088527 -65784642 + AT_rich Low_complexity Low_complexity 1 31 0 571 229 176 16 chr13 36090144 36090332 -65782837 + MIR SINE MIR 45 262 0 2308 237 24 4 chr13 36090456 36091009 -65782160 - MER90 LTR ERV1 -11 564 1 279 306 107 0 chr13 36091123 36091244 -65781925 - L2 LINE L2 0 3313 3180 1728 187 31 24 chr13 36092300 36092759 -65780410 + MLT2B1 LTR ERVL 1 510 -5 389 323 118 0 chr13 36093862 36094091 -65779078 - MIR SINE MIR -1 261 6 182 304 0 0 chr13 36095279 36095335 -65777834 + MIR SINE MIR 137 192 -70 218 325 79 16 chr13 36095643 36095769 -65777400 - L2 LINE L2 -10 3303 3170 285 317 182 14 chr13 36095818 36096181 -65776988 + L2 LINE L2 1894 2317 -997 474 333 143 16 chr13 36096338 36096701 -65776468 + LTR67 LTR ERVL 147 555 -2 5620 156 28 9 chr13 36096798 36097744 -65775425 - L1MC1 LINE L1 0 6333 5371 33 43 0 0 chr13 36098399 36098446 -65774723 + AT_rich Low_complexity Low_complexity 1 47 0 7372 57 16 2 chr13 36098452 36099642 -65773527 - L1PA7 LINE L1 -11 6143 4948 228 330 50 82 chr13 36101102 36101384 -65771785 + L2 LINE L2 2335 2607 -707 781 191 54 6 chr13 36101548 36101716 -65771453 - MER5B DNA MER1_type 0 178 3 214 279 16 0 chr13 36101772 36101833 -65771336 - MER5B DNA MER1_type -6 172 111 2000 228 135 26 chr13 36101835 36102370 -65770799 + MLT1E LTR MaLR 1 593 0 1926 168 7 0 chr13 36102378 36102687 -65770482 + AluJb SINE Alu 1 311 -1 405 339 67 0 chr13 36103262 36103427 -65769742 + L3 LINE CR1 1400 1575 -2 1285 234 83 41 chr13 36104128 36104491 -65768678 - MER21B LTR ERV1 -202 661 284 842 203 9 65 chr13 36104500 36104717 -65768452 - MLT1C LTR MaLR -262 205 1 245 207 52 0 chr13 36104927 36104985 -65768184 - MIR3 SINE MIR -21 187 127 1557 188 3 13 chr13 36105937 36106246 -65766923 - AluJo SINE Alu -6 306 1 1264 205 88 22 chr13 36107446 36107763 -65765406 + MER46C DNA MER2_type 1 338 0 350 246 85 15 chr13 36108933 36109063 -65764106 - L1ME4a LINE L1 -22 6099 5961 366 162 0 0 chr13 36109989 36110063 -65763106 + (CA)n Simple_repeat Simple_repeat 1 74 0 310 206 40 8 chr13 36110063 36110189 -65762980 + (TA)n Simple_repeat Simple_repeat 1 130 0 2181 118 40 58 chr13 36111216 36111592 -65761577 - L1MB8 LINE L1 -17 6161 5780 2599 124 3 6 chr13 36111592 36111948 -65761221 - THE1A LTR MaLR 0 355 1 12448 100 2 1 chr13 36111948 36113525 -65759644 - THE1A-int LTR MaLR 0 1580 1 2558 105 17 8 chr13 36113525 36113877 -65759292 - THE1A LTR MaLR 0 355 1 2181 118 40 58 chr13 36113877 36113897 -65759272 - L1MB8 LINE L1 -395 5783 5770 5843 150 32 20 chr13 36113948 36115917 -65757252 - L1MA9 LINE L1 0 6312 4316 * 43380 36 22 1 chr13 36115912 36121934 -65751235 - L1PA2 LINE L1 -5 6150 2 1536 131 8 4 chr13 36121935 36122187 -65750982 - L1MA9 LINE L1 -1819 4327 4075 849 212 11 8 chr13 36122190 36122390 -65750779 - L1MB8 LINE L1 -402 5754 5553 1927 212 113 53 chr13 36122811 36123335 -65749834 + MLT1F1 LTR MaLR 13 567 0 312 158 0 0 chr13 36123360 36123417 -65749752 + (TGG)n Simple_repeat Simple_repeat 3 59 0 2378 144 9 0 chr13 36123932 36124266 -65748903 + MER1B DNA MER1_type 1 337 0 2173 95 0 0 chr13 36124473 36124778 -65748391 - L1P LINE L1 -2163 3983 3679 5082 53 13 0 chr13 36124780 36125378 -65747791 + L1PA7 LINE L1 5547 6152 -2 1162 215 107 15 chr13 36125690 36125960 -65747209 + MLT1E LTR MaLR 257 551 -42 2748 145 24 9 chr13 36125982 36126402 -65746767 - MSTB LTR MaLR 0 426 1 225 186 23 0 chr13 36126953 36126996 -65746173 + MER53 DNA DNA 6 49 -140 * 236 143 0 0 chr13 36126994 36127029 -65746140 - U2 snRNA snRNA -153 35 1 447 90 15 0 chr13 36127030 36127097 -65746072 - MER53 DNA DNA -21 168 101 186 43 0 0 chr13 36128188 36128211 -65744958 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2140 111 9 19 chr13 36129775 36129897 -65743272 + AluSp SINE Alu 1 123 -190 186 43 0 0 chr13 36129897 36129920 -65743249 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2140 111 9 19 chr13 36129920 36130113 -65743056 + AluSp SINE Alu 123 313 0 20031 151 18 15 chr13 36130574 36136299 -65736870 + L1PA11 LINE L1 756 6489 0 717 140 20 20 chr13 36137253 36137403 -65735766 - L1M1 LINE L1 -7397 168 19 266 125 0 0 chr13 36137461 36137501 -65735668 + L1P LINE L1 3821 3860 -2286 * 347 299 36 52 chr13 36137497 36137885 -65735284 - L1ME LINE L1 -4994 1076 695 393 141 13 13 chr13 36137980 36138058 -65735111 - L1MC3 LINE L1 -8 7777 7700 472 169 0 0 chr13 36138513 36138596 -65734573 - L1MC3 LINE L1 -79 7706 7624 1179 152 24 0 chr13 36138597 36138808 -65734361 - Tigger1 DNA MER2_type -1 2417 2202 846 203 0 6 chr13 36138797 36138955 -65734214 - Tigger1 DNA MER2_type -2261 157 1 * 1111 204 61 0 chr13 36138955 36139219 -65733950 - L1MC3 LINE L1 -165 7620 7341 189 196 0 0 chr13 36139256 36139307 -65733862 + CT-rich Low_complexity Low_complexity 1 51 0 627 58 23 0 chr13 36140470 36140557 -65732612 - LOR1-int LTR ERV1 -4718 3402 3314 903 154 14 29 chr13 36140557 36140765 -65732404 + L1MA7 LINE L1 6086 6290 -1 195 290 32 32 chr13 36141432 36141494 -65731675 + L2 LINE L2 3251 3312 -1 378 306 45 25 chr13 36142246 36142403 -65730766 + MER5A DNA MER1_type 2 161 -28 2387 185 97 62 chr13 36142524 36143156 -65730013 + MLT1E1 LTR MaLR 1 654 0 986 262 170 31 chr13 36143252 36143763 -65729406 + Charlie2b DNA MER1_type 27 608 -2254 234 215 0 31 chr13 36143884 36143949 -65729220 + Charlie2b DNA MER1_type 615 677 -2105 1668 229 123 13 chr13 36144009 36144194 -65728975 + Charlie2a DNA MER1_type 1479 1642 -1220 2342 101 0 3 chr13 36144194 36144492 -65728677 + AluSq SINE Alu 1 297 -16 1668 229 123 13 chr13 36144492 36144923 -65728246 + Charlie2a DNA MER1_type 1642 2163 -699 687 269 32 15 chr13 36144961 36145299 -65727870 + Charlie2a DNA MER1_type 2519 2862 0 364 310 98 12 chr13 36145403 36145648 -65727521 - MLT1I LTR MaLR -143 266 1 235 294 0 15 chr13 36146568 36146636 -65726533 + MIR SINE MIR 194 260 -2 1083 146 47 13 chr13 36146749 36146982 -65726187 - L1MA8 LINE L1 -3 6288 6048 13014 90 14 1 chr13 36148411 36151040 -65722129 - L1PA7 LINE L1 -5 6149 3493 256 169 42 0 chr13 36151152 36151223 -65721946 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1165 214 18 0 chr13 36151290 36151510 -65721659 + MIR SINE MIR 7 230 -32 424 271 173 22 chr13 36151536 36151812 -65721357 - L2 LINE L2 -211 3061 2750 189 0 0 0 chr13 36152025 36152046 -65721123 + (GA)n Simple_repeat Simple_repeat 2 22 0 1390 217 57 3 chr13 36152046 36152382 -65720787 - MLT2D LTR ERVL -60 354 1 318 324 70 22 chr13 36152382 36152567 -65720602 - L2 LINE L2 -687 2627 2434 210 252 25 8 chr13 36152603 36152680 -65720489 + GA-rich Low_complexity Low_complexity 1 78 0 666 168 0 0 chr13 36152998 36153117 -65720052 - MLT2D LTR ERVL -295 119 1 2252 106 0 3 chr13 36153308 36153609 -65719560 - AluSc SINE Alu -9 300 1 23 0 0 0 chr13 36154177 36154200 -65718969 + AT_rich Low_complexity Low_complexity 1 23 0 294 87 0 0 chr13 36154524 36154570 -65718599 + (GA)n Simple_repeat Simple_repeat 1 46 0 841 215 191 57 chr13 36155358 36155977 -65717192 - LTR50 LTR ERVL -1 794 1 1514 217 92 74 chr13 36156195 36156752 -65716417 + MLT1F1 LTR MaLR 1 567 0 204 40 0 0 chr13 36157021 36157046 -65716123 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2444 49 0 13 chr13 36158744 36159048 -65714121 - AluY SINE Alu -11 300 1 2182 122 7 0 chr13 36159672 36159968 -65713201 - AluSx SINE Alu -14 298 1 2468 118 60 0 chr13 36160714 36161112 -65712057 - L1MA2 LINE L1 0 6304 5883 301 309 54 60 chr13 36161207 36161521 -65711648 + MLT1I LTR MaLR 34 345 -64 5789 56 1 0 chr13 36161533 36162246 -65710923 - L1PA6 LINE L1 -13 6141 5428 5806 57 0 0 chr13 36162251 36162972 -65710197 - L1PA5 LINE L1 -6 6148 5428 4073 77 0 0 chr13 36162977 36163507 -65709662 - L1PA5 LINE L1 -6 6148 5619 35944 80 17 10 chr13 36163607 36168907 -65704262 - L1PA5 LINE L1 -795 5351 11 319 186 43 0 chr13 36168920 36168990 -65704179 + MLT1I LTR MaLR 331 403 -6 30 0 0 0 chr13 36169065 36169095 -65704074 + AT_rich Low_complexity Low_complexity 1 30 0 1132 148 59 13 chr13 36169096 36169333 -65703836 - L1MB3 LINE L1 -1 6182 5935 3074 169 12 20 chr13 36169400 36170045 -65703124 - L1MB3 LINE L1 -258 5922 5283 791 247 0 6 chr13 36170046 36170224 -65702945 + MER58A DNA MER1_type 42 218 -6 25698 27 1 4 chr13 36170418 36174284 -65698885 + L1PA3 LINE L1 2287 6155 0 820 206 114 26 chr13 36174389 36174617 -65698552 - MIR SINE MIR -2 260 13 183 350 51 29 chr13 36174652 36174789 -65698380 - L2 LINE L2 -412 2902 2763 2335 110 0 3 chr13 36175471 36175780 -65697389 + AluSx SINE Alu 1 308 -4 957 99 0 0 chr13 36175862 36175983 -65697186 - AluSq/x SINE Alu -192 121 1 231 61 0 0 chr13 36176212 36176245 -65696924 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1892 130 22 4 chr13 36176248 36176525 -65696644 - AluSx SINE Alu -30 282 1 1955 76 0 0 chr13 36176528 36176778 -65696391 - L1PA8 LINE L1 -6 6166 5917 2897 216 15 10 chr13 36176778 36177362 -65695807 + MER82 DNA MER2_type 67 653 0 399 272 10 10 chr13 36179337 36179440 -65693729 - MIR SINE MIR -1 261 159 826 234 276 19 chr13 36179440 36179871 -65693298 + MLT1F LTR MaLR 1 542 0 195 294 111 48 chr13 36179875 36180001 -65693168 - MIR SINE MIR -103 159 26 195 206 48 48 chr13 36180703 36180766 -65692403 - MIR SINE MIR -63 145 83 681 230 112 25 chr13 36180777 36180973 -65692196 - MIR SINE MIR -14 248 36 1938 183 74 69 chr13 36181576 36181612 -65691557 - MLT2B3 LTR ERVL 0 554 520 438 20 0 0 chr13 36181612 36181663 -65691506 + (TG)n Simple_repeat Simple_repeat 1 51 0 1938 183 74 69 chr13 36181663 36182177 -65690992 - MLT2B3 LTR ERVL -34 520 1 181 356 14 0 chr13 36182238 36182311 -65690858 + MIR SINE MIR 2 75 -187 345 247 0 24 chr13 36182868 36182953 -65690216 - MIR SINE MIR -11 251 169 663 189 169 0 chr13 36182969 36183117 -65690052 + MER5A DNA MER1_type 10 182 -7 262 137 0 20 chr13 36183152 36183203 -65689966 - MIR SINE MIR -118 144 95 291 114 0 0 chr13 36183636 36183680 -65689489 + (CA)n Simple_repeat Simple_repeat 2 45 0 421 186 289 57 chr13 36184315 36184411 -65688758 + MIR SINE MIR 9 81 -181 635 78 0 0 chr13 36184411 36184488 -65688681 + MADE1 DNA Mariner 1 77 -3 421 186 289 57 chr13 36184488 36184585 -65688584 + MIR SINE MIR 81 247 -15 401 234 229 27 chr13 36184686 36184874 -65688295 + MER46C DNA MER2_type 1 226 -112 210 71 0 0 chr13 36185231 36185259 -65687910 + (T)n Simple_repeat Simple_repeat 1 28 0 283 269 86 21 chr13 36185262 36185496 -65687673 - L1MC5 LINE L1 -429 7532 7284 * 45269 39 0 3 chr13 36185477 36191647 -65681522 - L1PA3 LINE L1 0 6155 1 416 272 73 47 chr13 36191657 36191848 -65681321 + L2 LINE L2 3118 3313 0 2350 119 41 36 chr13 36192969 36193331 -65679838 - THE1B LTR MaLR 0 364 1 1485 154 37 197 chr13 36193969 36194494 -65678675 - MER61D LTR ERV1 0 501 1 2116 127 3 0 chr13 36196589 36196888 -65676281 - AluSx SINE Alu -12 300 1 401 313 67 7 chr13 36197757 36197907 -65675262 + MIR SINE MIR 26 184 -78 1340 267 70 25 chr13 36198450 36198933 -65674236 + MLT1D LTR MaLR 1 505 0 305 125 18 0 chr13 36200207 36200263 -65672906 + CT-rich Low_complexity Low_complexity 2 58 0 885 224 64 43 chr13 36200591 36200872 -65672297 - MLT1F LTR MaLR 0 542 278 8283 234 39 13 chr13 36200872 36201458 -65671711 - ERVL LTR ERVL -1544 4220 3650 450 0 0 0 chr13 36201458 36201508 -65671661 + (TG)n Simple_repeat Simple_repeat 1 50 0 8283 234 39 13 chr13 36201508 36203498 -65669671 - ERVL LTR ERVL -2114 3650 1553 559 198 35 93 chr13 36203503 36203675 -65669494 + MLT2C1 LTR ERVL 236 397 0 254 281 133 8 chr13 36203826 36203954 -65669215 - MLT1L LTR MaLR -65 550 407 270 221 63 63 chr13 36204129 36204256 -65668913 - MLT1J LTR MaLR -362 149 23 622 308 73 26 chr13 36206817 36207119 -65666050 + MLT1J2 LTR MaLR 3 318 -132 591 323 128 43 chr13 36207219 36207352 -65665817 - L2 LINE L2 -902 2412 2292 2119 116 3 0 chr13 36207352 36207636 -65665533 + AluSq SINE Alu 7 291 -22 591 323 128 43 chr13 36207636 36208040 -65665129 - L2 LINE L2 -1022 2292 1829 4300 134 23 0 chr13 36208051 36208698 -65664471 + L1PA16 LINE L1 5505 6166 0 4078 173 25 82 chr13 36208698 36208752 -65664417 + L1MD2 LINE L1 5388 5444 -915 2520 72 0 0 chr13 36208752 36209056 -65664113 + AluY SINE Alu 1 304 -7 4078 173 25 82 chr13 36209056 36209559 -65663610 + L1MD2 LINE L1 5444 5862 -497 306 73 0 0 chr13 36209559 36209600 -65663569 + (CA)n Simple_repeat Simple_repeat 2 42 0 4078 173 25 82 chr13 36209600 36210072 -65663097 + L1MD2 LINE L1 5862 6359 0 296 261 82 137 chr13 36210092 36210567 -65662602 - L2 LINE L2 -1548 1766 1318 699 151 145 13 chr13 36210579 36210731 -65662438 + MLT1D LTR MaLR 26 197 -308 1899 169 28 108 chr13 36210748 36210787 -65662382 - MSTB LTR MaLR 0 426 385 1360 39 0 0 chr13 36210787 36210940 -65662229 + L1PA3 LINE L1 6001 6153 -2 186 43 0 0 chr13 36210947 36210970 -65662199 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1899 169 28 108 chr13 36210970 36211200 -65661969 - MSTB LTR MaLR -47 379 198 4631 44 2 0 chr13 36211200 36211724 -65661445 - L1PA7 LINE L1 -13 6141 5617 1899 169 28 108 chr13 36211724 36211908 -65661261 - MSTB LTR MaLR -228 198 1 1131 222 21 12 chr13 36211931 36212174 -65660995 + MLT1D LTR MaLR 261 505 0 348 43 0 0 chr13 36212342 36212388 -65660781 + (CA)n Simple_repeat Simple_repeat 1 46 0 244 204 20 0 chr13 36213105 36213154 -65660015 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr13 36213206 36213228 -65659941 + AT_rich Low_complexity Low_complexity 1 22 0 301 352 75 73 chr13 36213703 36214155 -65659014 + L2 LINE L2 2817 3269 -3 229 219 0 0 chr13 36214867 36214908 -65658261 + MER5A DNA MER1_type 44 84 -105 257 250 26 26 chr13 36216380 36216456 -65656713 + MIR SINE MIR 46 121 -141 733 232 86 76 chr13 36216457 36216847 -65656322 + MLT1J LTR MaLR 19 461 -50 236 298 48 12 chr13 36216900 36216984 -65656185 + MIR SINE MIR 120 206 -56 589 129 14 10 chr13 36217177 36217280 -65655889 - L1P5 LINE L1 -443 5711 5600 5867 65 1 1 chr13 36217290 36217984 -65655185 - L1PA7 LINE L1 -16 6138 5445 2208 72 52 0 chr13 36217984 36218335 -65654834 + L1PA7 LINE L1 5080 5444 -710 * 3632 147 0 9 chr13 36218331 36219241 -65653928 - L1P5 LINE L1 -550 5615 4716 3514 107 15 0 chr13 36219241 36219709 -65653460 + L1PA15 LINE L1 5687 6161 -4 650 251 105 38 chr13 36219714 36219953 -65653216 + MIR SINE MIR 8 262 0 2931 223 94 33 chr13 36220150 36220212 -65652957 + HsTC2 DNA Tc2 16 73 -1825 4938 57 34 7 chr13 36220212 36220825 -65652344 + L1PA8 LINE L1 5536 6165 -7 2931 223 94 33 chr13 36220825 36221645 -65651524 + HsTC2 DNA Tc2 73 952 -946 336 186 35 12 chr13 36221693 36221779 -65651390 - L1 LINE L1 -996 5150 5063 997 159 29 12 chr13 36222107 36222277 -65650892 + THE1C LTR MaLR 1 173 -202 401 243 57 29 chr13 36222288 36222428 -65650741 - L1MC/D LINE L1 -2101 5707 5564 413 270 44 82 chr13 36222461 36223019 -65650150 - L1MC/D LINE L1 -979 5167 4537 346 293 286 0 chr13 36223044 36223184 -65649985 + MER5A DNA MER1_type 4 183 -6 487 340 79 22 chr13 36223507 36223822 -65649347 + L2 LINE L2 1638 1970 -1344 415 341 107 46 chr13 36223831 36224512 -65648657 + L2 LINE L2 2538 3272 0 235 336 35 35 chr13 36224777 36224893 -65648276 + L2 LINE L2 3197 3312 -1 1500 293 58 12 chr13 36226231 36226651 -65646518 + LTR33 LTR ERVL 1 449 -72 2582 103 28 14 chr13 36226651 36227010 -65646159 + THE1B LTR MaLR 1 364 0 1500 293 58 12 chr13 36227010 36227087 -65646082 + LTR33 LTR ERVL 449 521 0 181 378 27 27 chr13 36227257 36227368 -65645801 + L2 LINE L2 3202 3312 -1 340 248 86 9 chr13 36227981 36228086 -65645083 - L2 LINE L2 -2 3311 3199 186 303 45 73 chr13 36228300 36228478 -65644691 - L2 LINE L2 -167 3105 2933 310 299 39 16 chr13 36228961 36229088 -65644081 - L1ME LINE L1 -470 5651 5522 2395 90 0 0 chr13 36229311 36229610 -65643559 - AluY SINE Alu -12 299 1 425 268 107 48 chr13 36229861 36230352 -65642817 - L2 LINE L2 -110 3203 2676 380 260 203 53 chr13 36231602 36231829 -65641340 + L2 LINE L2 3019 3279 -34 191 200 0 0 chr13 36231804 36231834 -65641335 + MIR SINE MIR 210 239 -23 * 221 311 78 0 chr13 36232684 36232774 -65640395 + L2 LINE L2 2986 3082 -190 16547 33 3 1 chr13 36232824 36235668 -65637501 - L1PA4 LINE L1 -2 6153 3307 231 259 0 17 chr13 36236040 36236098 -65637071 + L2 LINE L2 3215 3271 -1 390 334 91 49 chr13 36236504 36236890 -65636279 - L2 LINE L2 0 3272 2871 316 309 224 40 chr13 36237004 36237681 -65635488 - L2 LINE L2 -623 2691 1890 428 275 116 60 chr13 36238309 36238542 -65634627 - MIR SINE MIR -16 246 1 264 274 16 0 chr13 36238678 36238740 -65634429 + L3 LINE CR1 1513 1575 -2 2563 136 22 62 chr13 36240088 36240467 -65632702 - L1PB4 LINE L1 -13 6143 5787 2301 117 0 3 chr13 36240467 36240774 -65632395 - AluSx SINE Alu -6 306 1 2563 136 22 62 chr13 36240774 36240893 -65632276 - L1PB4 LINE L1 -369 5787 5665 245 125 0 0 chr13 36240897 36240937 -65632232 - MLT2A1 LTR ERVL -8 436 397 240 35 0 0 chr13 36240958 36240987 -65632182 + (TATG)n Simple_repeat Simple_repeat 3 31 0 1698 61 18 0 chr13 36240992 36241221 -65631948 - MLT2A1 LTR ERVL -211 233 1 2101 103 43 6 chr13 36241221 36241570 -65631599 - L1PB4 LINE L1 -487 5669 5308 4330 90 21 0 chr13 36242894 36243503 -65629666 + L1PA13 LINE L1 5538 6159 -4 465 273 53 20 chr13 36243537 36243687 -65629482 + MLT1E LTR MaLR 1 155 -438 1310 208 23 8 chr13 36243688 36243953 -65629216 + MLT1E LTR MaLR 319 587 -6 274 274 137 43 chr13 36244183 36244300 -65628869 - L2 LINE L2 -21 3292 3165 180 0 0 0 chr13 36245247 36245267 -65627902 + (TG)n Simple_repeat Simple_repeat 1 20 0 325 186 12 12 chr13 36245267 36245353 -65627816 + GA-rich Low_complexity Low_complexity 2 87 0 279 0 0 0 chr13 36245360 36245391 -65627778 + (TG)n Simple_repeat Simple_repeat 1 31 0 3049 136 40 11 chr13 36246397 36246925 -65626244 - L1PA16 LINE L1 -5 6161 5619 195 309 79 79 chr13 36246927 36247066 -65626103 - L2 LINE L2 -8 3264 3126 256 325 116 37 chr13 36247354 36247622 -65625547 - L2 LINE L2 -555 2759 2471 1401 269 86 14 chr13 36248398 36248982 -65624187 - L1MC4a LINE L1 -1929 5879 5254 444 113 14 0 chr13 36249478 36249549 -65623620 + L1MA9 LINE L1 5419 5490 -801 638 81 0 0 chr13 36249549 36249635 -65623534 + L1PA15 LINE L1 5562 5647 -519 1148 92 6 0 chr13 36249636 36249799 -65623370 + L1PA15 LINE L1 5851 6014 -151 2628 128 32 44 chr13 36249799 36250299 -65622870 + L1MA9 LINE L1 5819 6312 0 319 191 146 0 chr13 36250586 36250675 -65622494 - MER46C DNA MER2_type -225 113 12 602 338 140 25 chr13 36251293 36251965 -65621204 - L2 LINE L2 -434 2880 2132 21 0 0 0 chr13 36252004 36252025 -65621144 + AT_rich Low_complexity Low_complexity 1 21 0 248 389 103 15 chr13 36252559 36252762 -65620407 + L2 LINE L2 2839 3059 -254 416 280 66 28 chr13 36252920 36253102 -65620067 - MIR SINE MIR -56 206 18 542 183 69 104 chr13 36254255 36254457 -65618712 + L1ME2 LINE L1 5968 6162 -2 1456 178 94 0 chr13 36254626 36254912 -65618257 + MLT1A1 LTR MaLR 1 313 -52 242 289 39 53 chr13 36255026 36255234 -65617935 - L1MCc LINE L1 -6194 229 25 26 50 0 0 chr13 36255239 36255279 -65617890 + AT_rich Low_complexity Low_complexity 1 40 0 216 283 81 46 chr13 36255476 36255563 -65617606 - MIR SINE MIR -57 151 58 180 111 0 0 chr13 36255577 36255604 -65617565 + (T)n Simple_repeat Simple_repeat 1 27 0 2976 171 82 16 chr13 36255604 36256295 -65616874 - L1MB4 LINE L1 0 6180 5444 544 299 30 0 chr13 36256628 36256792 -65616377 + MIR SINE MIR 79 247 -15 21 36 0 0 chr13 36256836 36256864 -65616305 + AT_rich Low_complexity Low_complexity 1 28 0 353 310 53 31 chr13 36257653 36257879 -65615290 - LTR33 LTR ERVL -236 285 55 218 244 199 23 chr13 36257973 36258104 -65615065 + L2 LINE L2 1597 1750 -1564 384 302 224 0 chr13 36258120 36258366 -65614803 - L2 LINE L2 -228 3044 2750 664 270 76 81 chr13 36258377 36258900 -65614269 - MLT1H1 LTR MaLR -12 543 67 1156 202 113 58 chr13 36258900 36259246 -65613923 - MLT1A1 LTR MaLR 0 365 1 664 270 76 81 chr13 36259246 36259307 -65613862 - MLT1H1 LTR MaLR -488 67 7 846 314 112 38 chr13 36259313 36259921 -65613248 - L2 LINE L2 -564 2750 2098 22 56 0 0 chr13 36259946 36259982 -65613187 + AT_rich Low_complexity Low_complexity 1 36 0 249 103 64 13 chr13 36260056 36260134 -65613035 + (TA)n Simple_repeat Simple_repeat 1 82 0 274 372 146 12 chr13 36261161 36261497 -65611672 - L2 LINE L2 -585 2729 2349 389 288 23 0 chr13 36262264 36262396 -65610773 + LTR67 LTR ERVL 409 543 -14 351 271 52 10 chr13 36262659 36262755 -65610414 + L2 LINE L2 3144 3243 -29 290 287 11 0 chr13 36262758 36262845 -65610324 + (CATA)n Simple_repeat Simple_repeat 4 91 0 1968 116 3 46 chr13 36262971 36263274 -65609895 + AluSx SINE Alu 23 312 0 261 273 65 0 chr13 36263656 36263733 -65609436 - MIR SINE MIR -120 142 61 720 244 121 3 chr13 36264637 36265026 -65608143 + L1M4 LINE L1 3072 3506 -2640 384 215 0 13 chr13 36265068 36265147 -65608022 - L1PB4 LINE L1 -71 6085 6008 * 2238 173 65 41 chr13 36265145 36265858 -65607311 - L1 LINE L1 -2352 3794 3065 * 23741 140 16 9 chr13 36265854 36271734 -65601435 - L1PA8A LINE L1 -487 5959 3 1553 157 60 14 chr13 36271784 36272201 -65600968 + MER61D LTR ERV1 1 491 -10 5667 29 0 0 chr13 36272625 36273285 -65599884 - L1PA4 LINE L1 -4 6151 5492 222 290 77 84 chr13 36274176 36274331 -65598838 - L2 LINE L2 -194 3078 2925 1146 236 78 17 chr13 36275008 36275352 -65597817 - MLT1A1 LTR MaLR 0 365 1 384 273 71 66 chr13 36275845 36276043 -65597126 + MIR SINE MIR 5 203 -59 822 305 78 16 chr13 36276045 36276419 -65596750 + MLT1I LTR MaLR 5 401 -8 186 259 56 0 chr13 36276925 36276979 -65596190 - MER5A DNA MER1_type -2 187 131 761 256 91 41 chr13 36276979 36277929 -65595240 - L1MD3 LINE L1 -14 7981 6922 195 42 0 0 chr13 36277929 36277953 -65595216 + (TG)n Simple_repeat Simple_repeat 1 24 0 761 256 91 41 chr13 36277953 36278039 -65595130 - L1MD3 LINE L1 -1073 6922 6842 242 306 36 45 chr13 36278049 36278160 -65595009 + MER5A DNA MER1_type 80 189 0 1367 335 146 21 chr13 36278577 36279907 -65593262 - L2 LINE L2 -3 3269 1764 504 117 0 0 chr13 36280798 36280875 -65592294 + MADE1 DNA Mariner 1 77 -3 663 180 80 10 chr13 36283569 36283769 -65589400 - Charlie5 DNA MER1_type -54 2558 2345 409 322 163 15 chr13 36283771 36284097 -65589072 - L1ME4a LINE L1 -246 5875 5502 2156 163 117 42 chr13 36284662 36285216 -65587953 - LTR1B LTR ERV1 -226 600 5 998 160 137 18 chr13 36285217 36285620 -65587549 + LTR1B LTR ERV1 332 826 0 614 183 138 29 chr13 36286697 36286937 -65586232 - MER20B DNA MER1_type 0 783 518 763 269 25 4 chr13 36287109 36287354 -65585815 - MER20B DNA MER1_type -510 273 24 295 290 49 31 chr13 36287381 36287534 -65585635 - MIR SINE MIR -49 159 3 403 236 81 0 chr13 36287947 36288070 -65585099 - MIR SINE MIR -27 235 103 9966 174 33 11 chr13 36288688 36291508 -65581661 + L1PA13 LINE L1 3321 6150 -13 533 13 120 0 chr13 36291532 36291607 -65581562 - L1PA3 LINE L1 0 6155 6072 2294 164 26 17 chr13 36292135 36292557 -65580612 + MSTB LTR MaLR 1 426 0 415 206 7 20 chr13 36292789 36292935 -65580234 + (TGG)n Simple_repeat Simple_repeat 2 145 0 364 171 80 0 chr13 36293517 36293605 -65579564 - L1MB4 LINE L1 0 6180 6086 13553 188 50 21 chr13 36293622 36299248 -65573921 - L1MA4 LINE L1 -292 6190 381 6042 12 0 0 chr13 36299248 36299927 -65573242 - L1PA2 LINE L1 -1 6154 5476 13553 188 50 21 chr13 36299927 36300320 -65572849 - L1MA4 LINE L1 -6101 381 1 773 199 79 28 chr13 36302511 36302727 -65570442 + MLT2D LTR ERVL 1 227 -187 2288 69 0 75 chr13 36302727 36303060 -65570109 - AluY SINE Alu -2 309 2 233 73 146 36 chr13 36303073 36303128 -65570041 + MLT2D LTR ERVL 404 464 0 260 271 93 25 chr13 36303130 36303248 -65569921 + MIR SINE MIR 79 204 -58 590 231 82 0 chr13 36303272 36303406 -65569763 - MIR SINE MIR -46 216 72 591 262 61 19 chr13 36303408 36303622 -65569547 + MLT1J2 LTR MaLR 1 223 -227 537 274 218 0 chr13 36304130 36304309 -65568860 + MIR SINE MIR 24 241 -21 2169 164 56 10 chr13 36304316 36304725 -65568444 - MSTA LTR MaLR 0 428 1 2008 105 3 48 chr13 36307120 36307298 -65565871 + AluSx SINE Alu 1 161 -143 3930 73 176 32 chr13 36307298 36307899 -65565270 - LTR12 LTR ERV1 0 688 1 2008 105 3 48 chr13 36307899 36308037 -65565132 + AluSx SINE Alu 161 304 0 218 366 0 24 chr13 36308252 36308334 -65564835 - L2 LINE L2 -7 3306 3227 1956 208 126 26 chr13 36308509 36309008 -65564161 + MLT1H LTR MaLR 1 549 0 254 300 41 59 chr13 36309010 36309180 -65563989 - L2 LINE L2 -216 3056 2890 319 300 71 36 chr13 36309376 36309516 -65563653 - L2 LINE L2 -1325 1989 1845 1322 214 51 42 chr13 36309877 36310233 -65562936 + MLT1A1 LTR MaLR 1 359 -6 7897 200 24 25 chr13 36310241 36311915 -65561254 + MLT1A1-int LTR MaLR 64 1735 0 550 222 0 17 chr13 36311916 36312033 -65561136 + MLT1A1 LTR MaLR 2 116 -312 6554 50 15 1 chr13 36312069 36312936 -65560233 - L1PA5 LINE L1 0 6154 5276 2490 116 36 3 chr13 36312940 36313327 -65559842 + MSTA LTR MaLR 29 428 0 772 215 32 59 chr13 36313327 36313579 -65559590 + MLT1A1 LTR MaLR 115 420 -8 22 35 0 0 chr13 36313704 36313733 -65559436 + AT_rich Low_complexity Low_complexity 1 29 0 207 69 0 0 chr13 36314116 36314145 -65559024 + (TG)n Simple_repeat Simple_repeat 2 30 0 809 215 6 12 chr13 36314637 36314800 -65558369 - FRAM SINE Alu -4 162 1 427 284 71 7 chr13 36314941 36315096 -65558073 + MIR SINE MIR 98 262 0 214 267 79 30 chr13 36315102 36315203 -65557966 - L2 LINE L2 -47 3266 3161 1567 240 29 41 chr13 36315957 36316544 -65556625 - L1ME1 LINE L1 -2 6164 5585 1563 195 138 3 chr13 36316573 36316957 -65556212 - L1P LINE L1 -1938 4911 4476 654 250 57 25 chr13 36316982 36317298 -65555871 - L1ME1 LINE L1 -1463 4683 4358 * 4991 138 22 18 chr13 36317273 36318181 -65554988 - L1PA15 LINE L1 0 6165 5254 2134 103 3 0 chr13 36318196 36318498 -65554671 + THE1A LTR MaLR 1 303 -52 840 97 0 0 chr13 36318499 36318613 -65554556 + THE1A LTR MaLR 242 355 0 11439 97 16 1 chr13 36318613 36320170 -65552999 + THE1A-int LTR MaLR 1 1580 0 2678 90 3 3 chr13 36320170 36320525 -65552644 + THE1A LTR MaLR 1 355 0 1821 232 18 2 chr13 36320538 36321029 -65552140 - L1PA15 LINE L1 -961 5185 4687 8649 202 39 8 chr13 36321029 36321901 -65551268 - L1PA15-16 LINE L1 -2357 4492 3648 2085 118 0 0 chr13 36321901 36322181 -65550988 - AluSg SINE Alu -1 309 30 8649 202 39 8 chr13 36322181 36324257 -65548912 - L1PA15-16 LINE L1 -3201 3648 1447 2381 149 14 30 chr13 36324257 36324578 -65548591 + MSTA LTR MaLR 1 315 -113 2877 186 25 73 chr13 36324578 36325304 -65547865 - LTR8 LTR ERV1 0 691 1 2381 149 14 30 chr13 36325304 36325417 -65547752 + MSTA LTR MaLR 315 428 0 8428 186 24 1 chr13 36325417 36327024 -65546145 + MSTA-int LTR MaLR 1 1644 -7 2038 173 50 24 chr13 36327031 36327215 -65545954 + MSTA LTR MaLR 1 179 -249 2170 110 0 23 chr13 36327215 36327515 -65545654 + AluSq SINE Alu 6 298 -15 2038 173 50 24 chr13 36327515 36327747 -65545422 + MSTA LTR MaLR 179 428 0 6052 208 32 8 chr13 36327747 36329387 -65543782 - L1PA15-16 LINE L1 -5398 1451 1 2992 143 66 0 chr13 36329390 36329979 -65543190 + Tigger3b DNA MER2_type 295 922 -309 2130 130 15 56 chr13 36329980 36330371 -65542798 - THE1C LTR MaLR 0 375 1 9143 125 13 64 chr13 36330371 36332036 -65541133 - THE1C-int LTR MaLR 0 1580 1 2224 133 24 27 chr13 36332036 36332412 -65540757 - THE1C LTR MaLR 0 375 1 939 104 45 0 chr13 36332413 36332567 -65540602 + Tigger3b DNA MER2_type 925 1085 -147 497 108 0 0 chr13 36332572 36332646 -65540523 - Tigger3(Golem) DNA MER2_type -62 2967 2894 2092 125 0 0 chr13 36332947 36333262 -65539907 + AluSg SINE Alu 1 315 0 780 170 7 0 chr13 36333265 36333400 -65539769 + Tigger3(Golem) DNA MER2_type 2892 3027 -2 336 281 42 0 chr13 36333566 36333662 -65539507 - MIR SINE MIR -115 147 48 27099 105 18 48 chr13 36333756 36340161 -65533008 - L1PA7 LINE L1 0 6154 12 1998 140 11 0 chr13 36341314 36341599 -65531570 - AluJo SINE Alu -19 293 6 657 273 71 8 chr13 36342996 36343234 -65529935 + MLT1I LTR MaLR 98 350 -59 343 273 49 7 chr13 36343493 36343645 -65529524 - L1ME LINE L1 -5154 1376 1203 479 271 124 77 chr13 36343695 36343797 -65529372 - L1MEd LINE L1 -1024 1466 1370 1907 154 50 3 chr13 36343797 36344095 -65529074 - AluJb SINE Alu 0 312 1 479 271 124 77 chr13 36344095 36344370 -65528799 - L1MEd LINE L1 -1120 1370 1109 2347 86 0 7 chr13 36344370 36344672 -65528497 - AluSc SINE Alu -9 300 1 479 271 124 77 chr13 36344672 36344824 -65528345 - L1MEd LINE L1 -1381 1109 815 1120 261 160 7 chr13 36344839 36345476 -65527693 - L2 LINE L2 -4 3309 2566 21 57 0 0 chr13 36345691 36345726 -65527443 + AT_rich Low_complexity Low_complexity 1 35 0 245 98 24 0 chr13 36346486 36346527 -65526642 + (GGGAGA)n Simple_repeat Simple_repeat 2 43 0 386 204 10 0 chr13 36346537 36346640 -65526529 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 300 93 0 0 chr13 36346645 36346688 -65526481 + MADE1 DNA Mariner 6 48 -32 2125 138 7 0 chr13 36347154 36347458 -65525711 + AluSx SINE Alu 1 306 -6 268 327 53 53 chr13 36348186 36348336 -65524833 + MIR3 SINE MIR 4 153 -55 1005 227 153 9 chr13 36348791 36349117 -65524052 + LOR1b LTR ERV1 81 453 -8 21 0 0 0 chr13 36349498 36349519 -65523650 + AT_rich Low_complexity Low_complexity 1 21 0 1776 167 73 6 chr13 36352396 36352546 -65520623 + MLT1A1 LTR MaLR 2 140 -225 2495 69 0 0 chr13 36352546 36352850 -65520319 + AluY SINE Alu 1 304 -7 1776 167 73 6 chr13 36352850 36353040 -65520129 + MLT1A1 LTR MaLR 140 365 0 580 243 68 0 chr13 36354015 36354163 -65519006 - MIR SINE MIR 0 262 105 1176 248 148 12 chr13 36354292 36354772 -65518397 + HsTC2 DNA Tc2 1268 1812 -86 206 317 37 0 chr13 36355058 36355140 -65518029 - MIR SINE MIR -66 196 112 823 301 65 12 chr13 36355174 36355499 -65517670 - LTR16A LTR ERVL -13 437 96 290 235 47 12 chr13 36356182 36356267 -65516902 - HERV16 LTR ERVL -3633 1363 1276 942 237 57 0 chr13 36356482 36356693 -65516476 + MER58A DNA MER1_type 2 224 0 231 241 181 0 chr13 36358657 36358740 -65514429 - L2 LINE L2 -12 3301 3204 725 324 137 26 chr13 36361356 36362156 -65511013 + L2 LINE L2 2405 3282 -31 3060 140 75 15 chr13 36362947 36363548 -65509621 - MER67C LTR ERV1 0 710 74 4837 175 44 27 chr13 36363572 36364159 -65509010 - L1MC1 LINE L1 -13 6389 5813 822 126 15 0 chr13 36364159 36364294 -65508875 + MER85 DNA T2_type 2 138 -1 4837 175 44 27 chr13 36364294 36365060 -65508109 - L1MC1 LINE L1 -589 5813 5014 2620 256 37 16 chr13 36365074 36366035 -65507134 - L1MC1 LINE L1 -3118 3097 2153 2435 116 0 79 chr13 36366100 36366541 -65506628 - L1PB1 LINE L1 -9 6142 5737 10178 83 34 1 chr13 36366558 36368755 -65504414 - L1PA7 LINE L1 -4 6150 3779 7880 105 10 21 chr13 36368747 36370047 -65503122 + L1P LINE L1 1924 3208 -2938 * 1715 137 3 0 chr13 36370032 36370348 -65502821 - L1PB1 LINE L1 -405 5746 5393 * 2312 206 30 13 chr13 36370348 36370918 -65502251 - L1MCa LINE L1 -3119 3307 2725 198 0 0 0 chr13 36370918 36370940 -65502229 + (TA)n Simple_repeat Simple_repeat 2 23 0 2312 206 30 13 chr13 36370940 36370967 -65502202 - L1MCa LINE L1 -3701 2725 2700 4120 124 29 17 chr13 36370973 36371730 -65501439 - L1PBa LINE L1 -4782 2081 1316 3033 154 26 53 chr13 36371727 36372167 -65501002 - L1PBa LINE L1 -6256 607 157 * 2117 131 13 0 chr13 36372167 36372473 -65500696 - AluSg SINE Alu 0 310 1 3033 154 26 53 chr13 36372473 36372493 -65500676 - L1PBa LINE L1 -6706 157 138 4356 25 4 2 chr13 36372493 36373008 -65500161 - L1PA3 LINE L1 0 6155 5640 3033 154 26 53 chr13 36373008 36373170 -65499999 - L1PBa LINE L1 -6725 138 1 856 167 83 38 chr13 36373177 36373318 -65499851 - L1MCa LINE L1 -4098 2328 2195 1844 155 0 11 chr13 36373318 36373595 -65499574 - AluSx SINE Alu -19 293 20 856 167 83 38 chr13 36373595 36373717 -65499452 - L1MCa LINE L1 -4231 2195 2053 4703 144 28 95 chr13 36373722 36374646 -65498523 - L1MCa LINE L1 -4273 2154 1170 1407 174 85 26 chr13 36374646 36374916 -65498253 + AluJo SINE Alu 5 290 -22 4703 144 28 95 chr13 36374916 36374954 -65498215 - L1MCa LINE L1 -5257 1170 1131 2045 118 4 0 chr13 36374954 36375258 -65497911 - AluSx SINE Alu 0 305 1 4703 144 28 95 chr13 36375258 36375488 -65497681 - L1MCa LINE L1 -5296 1131 597 1583 181 59 43 chr13 36375491 36375862 -65497307 - L1MCa LINE L1 -6003 423 47 21 0 0 0 chr13 36377595 36377616 -65495553 + AT_rich Low_complexity Low_complexity 1 21 0 2081 189 63 39 chr13 36378661 36379154 -65494015 + MLT1D LTR MaLR 1 505 0 646 339 60 39 chr13 36380314 36380697 -65492472 - L2 LINE L2 -491 2823 2433 1359 194 22 19 chr13 36380765 36381033 -65492136 - AluJo SINE Alu -43 269 1 5189 107 7 1 chr13 36381640 36382414 -65490755 + HERV9 LTR ERV1 7622 8399 0 1391 94 213 0 chr13 36382414 36382649 -65490520 + LTR12 LTR ERV1 1 285 -429 227 244 33 22 chr13 36382649 36382739 -65490430 + LTR30 LTR ERV1 552 642 -80 688 130 0 0 chr13 36382742 36382842 -65490327 + LTR12 LTR ERV1 615 714 0 1984 101 4 8 chr13 36382842 36383110 -65490059 + AluSx SINE Alu 31 297 -15 351 254 141 16 chr13 36384699 36384947 -65488222 - L1ME4a LINE L1 -208 5913 5635 225 163 0 0 chr13 36385248 36385297 -65487872 + (TA)n Simple_repeat Simple_repeat 1 49 0 428 231 130 6 chr13 36385354 36385523 -65487646 + MER20 DNA MER1_type 30 219 0 1359 207 183 19 chr13 36386365 36386747 -65486422 + MLT1D LTR MaLR 8 433 -72 201 183 28 28 chr13 36387470 36387541 -65485628 + (TA)n Simple_repeat Simple_repeat 2 72 0 285 386 29 7 chr13 36387880 36388020 -65485149 + MIR SINE MIR 4 146 -116 422 306 19 6 chr13 36388146 36388303 -65484866 + L1ME1 LINE L1 5945 6103 -63 1672 260 67 44 chr13 36388346 36389467 -65483702 - L1MEc LINE L1 -4664 1732 541 491 205 58 85 chr13 36389438 36389662 -65483507 - L1M1 LINE L1 -4041 2174 1957 * 683 353 42 16 chr13 36390268 36390650 -65482519 + L1M3c LINE L1 1 392 -5749 960 99 0 14 chr13 36391149 36391290 -65481879 - MLT2A2 LTR ERVL 0 453 315 1075 245 0 0 chr13 36391301 36391501 -65481668 + MER8 DNA MER2_type 40 239 0 508 170 9 9 chr13 36391521 36391627 -65481542 + Charlie5 DNA MER1_type 2516 2621 0 246 260 240 34 chr13 36392075 36392221 -65480948 + MIR SINE MIR 67 242 -20 219 310 0 0 chr13 36392333 36392404 -65480765 + MIR SINE MIR 84 154 -108 372 244 89 1 chr13 36393161 36393308 -65479861 - HAL1b LINE L1 -2 6119 1201 183 184 0 0 chr13 36393332 36393370 -65479799 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 209 225 0 0 chr13 36393426 36393466 -65479703 + L2 LINE L2 3258 3297 -16 552 250 27 79 chr13 36393501 36393829 -65479340 - L1ME4a LINE L1 -249 5872 5562 280 105 0 46 chr13 36393964 36394019 -65479150 - FLAM_A SINE Alu -1 132 86 211 336 132 28 chr13 36394631 36394881 -65478288 + L2 LINE L2 2468 2743 -571 203 375 0 14 chr13 36445294 36445366 -65427803 - MIR SINE MIR -155 107 37 225 320 117 10 chr13 36446531 36446634 -65426535 + MIR3 SINE MIR 43 156 -52 2003 140 17 10 chr13 36446960 36447260 -65425909 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr13 36448496 36448520 -65424649 + AT_rich Low_complexity Low_complexity 1 24 0 267 263 0 0 chr13 36449656 36449713 -65423456 + L2 LINE L2 3251 3307 -6 271 217 214 67 chr13 36449911 36450126 -65423043 + L1ME4a LINE L1 5712 5894 -227 1529 170 41 52 chr13 36450126 36450491 -65422678 + MLT1A1 LTR MaLR 1 361 -4 271 217 214 67 chr13 36450491 36450616 -65422553 + L1ME4a LINE L1 5894 6102 -19 192 40 0 0 chr13 36450616 36450641 -65422528 + (TG)n Simple_repeat Simple_repeat 2 26 0 383 88 63 38 chr13 36451021 36451058 -65422111 + (TA)n Simple_repeat Simple_repeat 1 36 -127 1148 171 45 0 chr13 36451058 36451257 -65421912 - MER6B DNA MER2_type 0 210 3 383 88 63 38 chr13 36451257 36451378 -65421791 + (TA)n Simple_repeat Simple_repeat 36 163 0 28 0 0 0 chr13 36451609 36451637 -65421532 + AT_rich Low_complexity Low_complexity 1 28 0 2204 92 0 7 chr13 36451645 36451929 -65421240 - AluY SINE Alu -29 282 1 1574 139 37 29 chr13 36452006 36452210 -65420959 - MLT1A1 LTR MaLR 0 365 157 1492 119 163 16 chr13 36452210 36452462 -65420707 - AluSg1 SINE Alu -20 289 1 1574 139 37 29 chr13 36452462 36452530 -65420639 - MLT1A1 LTR MaLR -208 157 91 460 202 0 11 chr13 36452630 36452724 -65420445 - MLT1A1 LTR MaLR -272 93 1 731 250 31 35 chr13 36452940 36453168 -65420001 - L1ME3 LINE L1 -87 6075 5849 * 4910 148 12 69 chr13 36453152 36454903 -65418266 - L1PB1 LINE L1 -70 6396 4731 1298 206 18 0 chr13 36454893 36455174 -65417995 - L1PB1 LINE L1 -3626 2835 2550 * 4223 190 26 8 chr13 36455185 36456089 -65417080 - L1 LINE L1 -1731 4415 3495 4569 145 6 4 chr13 36456220 36456949 -65416220 - L1PB1 LINE L1 -5144 731 2 234 264 111 0 chr13 36457169 36457241 -65415928 + MIR SINE MIR 67 146 -116 3135 81 45 0 chr13 36457406 36457824 -65415345 + LTR3b LTR ERVK 1 437 0 23 0 0 0 chr13 36458012 36458035 -65415134 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr13 36458432 36458462 -65414707 + (A)n Simple_repeat Simple_repeat 1 30 0 2259 118 0 0 chr13 36458783 36459089 -65414080 - AluSg SINE Alu -4 306 1 1901 158 32 16 chr13 36460991 36461301 -65411868 + 7SLRNA srpRNA srpRNA 1 315 -5 2162 86 4 4 chr13 36461927 36462228 -65410941 - AluSc SINE Alu 0 303 3 2326 109 14 3 chr13 36462624 36462974 -65410195 + L1PB1 LINE L1 5798 6151 0 1847 193 13 80 chr13 36463379 36463613 -65409556 - L1M4 LINE L1 -876 5270 5089 2627 30 0 0 chr13 36463613 36463908 -65409261 - AluYb8 SINE Alu -2 316 22 1847 193 13 80 chr13 36463908 36464196 -65408973 - L1M4 LINE L1 -1057 5089 4783 317 314 29 9 chr13 36464207 36464312 -65408857 - MIR SINE MIR -62 146 40 813 194 78 0 chr13 36465453 36465644 -65407525 + L1 LINE L1 3451 3656 -2490 1673 145 37 7 chr13 36465645 36465941 -65407228 + L1PB4 LINE L1 5850 6154 -2 3791 96 34 26 chr13 36466863 36467582 -65405587 - L1PA8A LINE L1 -644 5487 4781 * 10708 131 11 1 chr13 36467579 36469291 -65403878 + L1PA8A LINE L1 3041 4769 -1377 2366 171 60 50 chr13 36470077 36470592 -65402577 - MLT2B1 LTR ERVL 0 520 1 274 291 23 0 chr13 36472593 36472679 -65400490 + MER103 DNA DNA 46 133 -33 237 65 0 0 chr13 36473265 36473296 -65399873 + (TATG)n Simple_repeat Simple_repeat 2 32 0 562 214 24 8 chr13 36473448 36473574 -65399595 - MIR SINE MIR -56 206 79 22 0 0 0 chr13 36475712 36475734 -65397435 + AT_rich Low_complexity Low_complexity 1 22 0 216 260 178 14 chr13 36476418 36476491 -65396678 + L2 LINE L2 3229 3313 0 188 192 11 62 chr13 36477574 36477751 -65395418 + (TATATG)n Simple_repeat Simple_repeat 6 173 0 21 0 0 0 chr13 36477970 36477991 -65395178 + AT_rich Low_complexity Low_complexity 1 21 0 1373 222 7 7 chr13 36478091 36478375 -65394794 + AluJo SINE Alu 1 284 -28 474 300 131 45 chr13 36478612 36478739 -65394430 - L1MEd LINE L1 -4875 1244 1129 2315 76 3 3 chr13 36478739 36479042 -65394127 + AluY SINE Alu 1 303 -8 474 300 131 45 chr13 36479042 36479334 -65393835 - L1MEd LINE L1 -4990 1129 789 263 102 0 20 chr13 36479461 36479510 -65393659 + (TA)n Simple_repeat Simple_repeat 2 49 0 317 340 10 0 chr13 36481228 36481328 -65391841 - L3 LINE CR1 -187 1390 1290 819 324 136 23 chr13 36481337 36481472 -65391697 - L3 LINE CR1 -769 808 690 2439 113 28 22 chr13 36481472 36481834 -65391335 - THE1B LTR MaLR 0 364 1 819 324 136 23 chr13 36481834 36482140 -65391029 - L3 LINE CR1 -887 690 317 619 293 83 9 chr13 36482519 36482748 -65390421 + MIR SINE MIR 11 256 -6 202 214 0 143 chr13 36483098 36483196 -65389973 - MIR SINE MIR -144 118 35 7071 82 10 1 chr13 36483360 36484402 -65388767 + L1P LINE L1 4380 5428 -727 359 304 219 0 chr13 36484672 36484873 -65388296 + L2 LINE L2 2150 2394 -920 1200 165 238 36 chr13 36484878 36485181 -65387988 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr13 36486561 36486585 -65386584 + AT_rich Low_complexity Low_complexity 1 24 0 1676 181 7 0 chr13 36488106 36488398 -65384771 - AluSx SINE Alu -18 294 1 254 190 35 0 chr13 36491651 36491709 -65381460 + LTR61 LTR ERV1 218 277 -318 1400 174 42 122 chr13 36493009 36493412 -65379757 + MER67D LTR ERV1 1 371 -143 888 157 220 0 chr13 36493427 36493618 -65379551 - Tigger3(Golem) DNA MER2_type -35 2994 2762 4673 24 0 0 chr13 36493618 36494158 -65379011 + L1PA4 LINE L1 5506 6045 -110 452 267 272 15 chr13 36494482 36494677 -65378492 + MIR SINE MIR 10 254 -8 2122 135 0 0 chr13 36494685 36494981 -65378188 - AluSg SINE Alu -14 296 1 491 303 28 17 chr13 36497213 36497391 -65375778 + MIR SINE MIR 69 248 -14 1615 194 0 14 chr13 36497408 36497691 -65375478 + AluJo SINE Alu 3 281 -31 277 240 264 31 chr13 36497755 36497884 -65375285 - MIR SINE MIR -102 160 2 225 65 0 0 chr13 36498289 36498320 -65374849 + (TG)n Simple_repeat Simple_repeat 1 31 0 493 325 16 31 chr13 36498838 36499032 -65374137 - MIR SINE MIR -69 193 3 324 0 0 0 chr13 36499722 36499758 -65373411 + (CA)n Simple_repeat Simple_repeat 2 37 0 2921 197 32 65 chr13 36499982 36500091 -65373078 - L1MD1 LINE L1 -19 6223 6112 336 94 0 0 chr13 36500091 36500144 -65373025 - L1MA9 LINE L1 -1 6311 6259 2921 197 32 65 chr13 36500144 36500463 -65372706 - L1MD1 LINE L1 -130 6112 5784 2545 132 31 24 chr13 36500463 36500888 -65372281 + MSTA LTR MaLR 1 428 0 2921 197 32 65 chr13 36500888 36501101 -65372068 - L1MD1 LINE L1 -458 5784 5610 2261 108 3 3 chr13 36501101 36501406 -65371763 - AluSx SINE Alu -7 305 1 2921 197 32 65 chr13 36501406 36501568 -65371601 - L1MD1 LINE L1 -632 5610 5444 4907 111 18 5 chr13 36501588 36502366 -65370803 - L1MA2 LINE L1 0 6304 5517 14036 135 37 14 chr13 36502471 36504904 -65368265 + L1P LINE L1 1407 3897 -2249 2546 251 61 35 chr13 36505034 36505870 -65367299 + L1MB8 LINE L1 46 903 -5639 353 314 21 7 chr13 36505876 36506016 -65367153 + L1M4 LINE L1 1794 1935 -4711 2162 230 65 62 chr13 36506019 36506391 -65366778 + L1MB8 LINE L1 913 1283 -5542 1535 201 3 31 chr13 36506391 36506679 -65366490 - AluJb SINE Alu -30 282 3 2162 230 65 62 chr13 36506679 36507422 -65365747 + L1MB8 LINE L1 1283 2165 -4660 2594 26 7 7 chr13 36507422 36507726 -65365443 + AluY SINE Alu 1 304 -7 2162 230 65 62 chr13 36507726 36507974 -65365195 + L1MB8 LINE L1 2165 2411 -4414 10188 148 49 4 chr13 36507986 36509665 -65363504 + Tigger4(Zombi) DNA MER2_type 28 1781 -950 232 225 70 0 chr13 36509691 36509762 -65363407 - L1MA4 LINE L1 -22 7697 7622 19995 200 30 47 chr13 36510074 36511278 -65361891 - L1MA4 LINE L1 -83 7636 6413 423 139 13 0 chr13 36511278 36511357 -65361812 - MADE1 DNA Mariner 0 80 1 19995 200 30 47 chr13 36511357 36512590 -65360579 - L1MA4 LINE L1 -1306 6413 5160 1290 128 10 15 chr13 36512590 36512786 -65360383 + AluY SINE Alu 100 294 -17 19995 200 30 47 chr13 36512786 36517200 -65355969 - L1MA4 LINE L1 -2559 5160 856 1914 129 18 4 chr13 36517200 36517478 -65355691 + AluSx SINE Alu 1 282 -30 19995 200 30 47 chr13 36517478 36518299 -65354870 - L1MA4 LINE L1 -6863 856 22 1620 164 26 3 chr13 36518321 36518626 -65354543 - L1MC1 LINE L1 -5 6328 6017 736 158 19 6 chr13 36518627 36518785 -65354384 - L1MC1 LINE L1 -917 5442 5283 * 37412 34 1 0 chr13 36518781 36524092 -65349077 - L1PA3 LINE L1 -2 6153 838 6137 73 13 4 chr13 36524192 36525024 -65348145 + L1PA7 LINE L1 5311 6150 -4 4696 240 62 14 chr13 36525100 36525377 -65347792 + L1MB8 LINE L1 2615 2877 -3767 2010 147 0 0 chr13 36525377 36525710 -65347459 + AluSq SINE Alu 1 333 0 4696 240 62 14 chr13 36525710 36527095 -65346074 + L1MB8 LINE L1 2877 4358 -2286 1390 192 17 10 chr13 36527097 36527388 -65345781 + L1MA9 LINE L1 5856 6148 -164 9578 177 44 31 chr13 36527400 36529224 -65343945 - L1MA7 LINE L1 -6 6285 4396 245 29 29 0 chr13 36529224 36529258 -65343911 + (TA)n Simple_repeat Simple_repeat 1 35 0 9578 177 44 31 chr13 36529258 36530676 -65342493 - L1MA7 LINE L1 -1895 4396 2998 286 290 11 86 chr13 36530680 36530866 -65342303 + L1MA10 LINE L1 6145 6316 -18 3169 228 61 15 chr13 36530904 36533061 -65340108 + L1MB8 LINE L1 4352 6648 -28 3637 226 113 57 chr13 36533179 36534647 -65338522 + L1M4 LINE L1 2224 3774 -2372 4043 150 10 46 chr13 36534648 36535459 -65337710 + L1 LINE L1 4495 5276 -870 1425 215 3 14 chr13 36535459 36535743 -65337426 + AluJo SINE Alu 1 281 -31 522 318 71 62 chr13 36535852 36536305 -65336864 + LTR67 LTR ERVL 44 500 -57 180 278 111 0 chr13 36536308 36536380 -65336789 - MIR SINE MIR -75 133 54 341 164 27 55 chr13 36537462 36537535 -65335634 - MLT1A2 LTR MaLR -311 63 1 376 288 58 37 chr13 36538269 36538460 -65334709 - L2 LINE L2 -5 3308 3114 217 86 0 0 chr13 36538651 36538686 -65334483 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 501 117 0 26 chr13 36538686 36538763 -65334406 - AluSg/x SINE Alu -1 314 206 229 132 0 0 chr13 36538808 36538846 -65334323 - AluSg/x SINE Alu -87 215 178 1479 132 5 0 chr13 36538810 36539022 -65334147 - AluSx SINE Alu -99 213 1 270 325 0 88 chr13 36539024 36539138 -65334031 - MER5B DNA MER1_type -74 104 1 405 287 43 19 chr13 36539424 36539633 -65333536 + L1M4 LINE L1 3788 4001 -2145 242 345 46 0 chr13 36539922 36540009 -65333160 + MIR SINE MIR 20 110 -152 318 217 0 17 chr13 36540223 36540283 -65332886 + L2 LINE L2 3208 3266 -6 24 32 0 0 chr13 36540299 36540330 -65332839 + AT_rich Low_complexity Low_complexity 1 31 0 272 70 23 0 chr13 36541256 36541299 -65331870 + (CA)n Simple_repeat Simple_repeat 1 44 0 456 19 0 0 chr13 36542168 36542221 -65330948 + (TG)n Simple_repeat Simple_repeat 2 54 0 680 250 50 6 chr13 36542373 36542553 -65330616 + MIR SINE MIR 49 236 -26 184 274 0 59 chr13 36542522 36542573 -65330596 + L2 LINE L2 3210 3257 -15 * 251 299 75 124 chr13 36542725 36543193 -65329976 - L2 LINE L2 0 3272 2828 1604 164 8 109 chr13 36543581 36543977 -65329192 - LTR8 LTR ERV1 -335 356 1 6337 120 185 8 chr13 36543977 36545118 -65328051 - L1PBa LINE L1 -4885 1978 636 1126 161 0 0 chr13 36545120 36545313 -65327856 - L1PBa LINE L1 -6663 200 8 2049 239 70 31 chr13 36545320 36546355 -65326814 - L1ME LINE L1 -579 5583 4501 4665 175 47 17 chr13 36546395 36547436 -65325733 - L1MA8 LINE L1 -5 6286 5216 2541 53 0 0 chr13 36547643 36547945 -65325224 + AluY SINE Alu 1 302 -9 266 380 38 20 chr13 36548452 36548622 -65324547 + MIR SINE MIR 7 187 -75 634 314 181 13 chr13 36548807 36549189 -65323980 - LTR33 LTR ERVL 0 521 76 530 94 7 17 chr13 36549401 36549534 -65323635 - L1P5 LINE L1 -704 5452 5326 314 395 107 11 chr13 36549806 36550069 -65323100 + L2 LINE L2 2985 3272 0 873 121 150 0 chr13 36550313 36550453 -65322716 + MSTA LTR MaLR 18 178 -250 578 67 0 11 chr13 36550453 36550568 -65322601 - Alu SINE Alu 0 312 224 882 83 0 0 chr13 36550568 36550677 -65322492 - AluY SINE Alu -202 109 1 1343 132 42 68 chr13 36550677 36550942 -65322227 + MSTA LTR MaLR 170 427 -1 517 240 124 46 chr13 36551324 36551541 -65321628 + MIR SINE MIR 17 250 -12 251 291 137 8 chr13 36552466 36552583 -65320586 - L2 LINE L2 -15 3298 3167 807 318 26 0 chr13 36552622 36552855 -65320314 - MIR SINE MIR -13 249 11 302 316 21 0 chr13 36552930 36553025 -65320144 + MIR SINE MIR 116 212 -50 346 321 0 0 chr13 36554308 36554420 -65318749 + MIR SINE MIR 151 262 0 21 0 0 0 chr13 36555526 36555547 -65317622 + AT_rich Low_complexity Low_complexity 1 21 0 1837 179 62 89 chr13 36556832 36557346 -65315823 + MLT1D LTR MaLR 6 505 0 1928 250 62 7 chr13 36557493 36558057 -65315112 - L1M4 LINE L1 -995 5151 4557 317 290 48 8 chr13 36558528 36558647 -65314522 + MIR SINE MIR 40 156 -56 363 44 0 0 chr13 36558955 36559000 -65314169 + (TG)n Simple_repeat Simple_repeat 1 45 0 237 169 0 0 chr13 36559002 36559061 -65314108 + GA-rich Low_complexity Low_complexity 2 60 0 273 327 96 0 chr13 36559416 36559520 -65313649 - MIR SINE MIR -130 132 19 389 319 37 15 chr13 36559895 36560030 -65313139 - MIR3 SINE MIR -60 148 11 234 0 0 0 chr13 36561157 36561183 -65311986 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1813 206 122 4 chr13 36561383 36561835 -65311334 - MLT1D LTR MaLR 0 505 1 192 391 76 60 chr13 36562479 36562663 -65310506 - L2 LINE L2 -79 3193 3007 269 289 12 12 chr13 36563339 36563422 -65309747 + GA-rich Low_complexity Low_complexity 3 85 0 189 329 29 50 chr13 36564083 36564223 -65308946 + MIR SINE MIR 39 175 -87 1003 201 169 19 chr13 36564235 36564546 -65308623 + MER47B DNA MER2_type 1 417 -1 1545 202 3 7 chr13 36564620 36564912 -65308257 + AluJb SINE Alu 1 291 -21 1490 173 189 70 chr13 36565634 36565898 -65307271 - MLT1D LTR MaLR 0 505 274 2136 114 0 25 chr13 36565898 36566213 -65306956 + AluSx SINE Alu 1 307 -5 1490 173 189 70 chr13 36566213 36566393 -65306776 - MLT1D LTR MaLR -231 274 8 2307 202 36 0 chr13 36566957 36567458 -65305711 - L1P LINE L1 -967 5179 4661 * 3406 126 38 2 chr13 36567454 36568009 -65305160 - L1PA8A LINE L1 -2413 3733 3159 10437 110 10 4 chr13 36568010 36569891 -65303278 + L1PA8A LINE L1 3730 5621 -510 24 0 0 0 chr13 36570255 36570279 -65302890 + AT_rich Low_complexity Low_complexity 1 24 0 2061 113 35 0 chr13 36570994 36571276 -65301893 - AluSg SINE Alu -18 292 1 867 242 27 7 chr13 36572761 36572964 -65300205 + MIR SINE MIR 18 216 -46 197 192 0 19 chr13 36572970 36573022 -65300147 + (TTA)n Simple_repeat Simple_repeat 2 52 0 610 93 0 56 chr13 36573658 36573766 -65299403 - L1PA2 LINE L1 0 6155 6054 2075 220 126 9 chr13 36574283 36574815 -65298354 + L1MCa LINE L1 17 610 -5816 387 0 0 0 chr13 36574991 36575034 -65298135 + (TG)n Simple_repeat Simple_repeat 2 44 0 225 328 141 0 chr13 36575173 36575301 -65297868 - LTR16C LTR ERVL -242 249 104 201 74 0 0 chr13 36576127 36576154 -65297015 + (A)n Simple_repeat Simple_repeat 1 27 0 259 346 162 13 chr13 36576527 36576761 -65296408 - L3 LINE CR1 -2 1575 1307 776 246 18 0 chr13 36578215 36578386 -65294783 - MLT1D LTR MaLR 0 505 332 188 45 0 0 chr13 36578512 36578534 -65294635 + (A)n Simple_repeat Simple_repeat 1 22 0 448 345 20 35 chr13 36579402 36579599 -65293570 + MIR3 SINE MIR 3 196 -12 212 206 147 98 chr13 36579623 36579725 -65293444 + MIR SINE MIR 125 231 -31 398 340 49 12 chr13 36580133 36580295 -65292874 - MIR3 SINE MIR -25 183 16 2058 122 7 3 chr13 36580382 36580685 -65292484 + AluSx SINE Alu 1 304 -8 201 74 0 0 chr13 36580744 36580771 -65292398 + (T)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr13 36581601 36581629 -65291540 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 36581963 36581992 -65291177 + AT_rich Low_complexity Low_complexity 1 29 0 691 188 111 0 chr13 36582133 36582294 -65290875 - L1ME1 LINE L1 0 6184 5999 410 206 88 101 chr13 36582530 36582758 -65290411 - L1ME1 LINE L1 -1027 5119 4895 1012 233 141 98 chr13 36582759 36583128 -65290041 - MLT1G LTR MaLR -210 385 1 4714 260 68 31 chr13 36585311 36587368 -65285801 + L1MEc LINE L1 37 2168 -4228 2635 113 15 0 chr13 36587429 36587819 -65285350 - L1PA15 LINE L1 -2 6163 5768 1135 169 0 0 chr13 36588087 36588264 -65284905 - MER58A DNA MER1_type -1 223 47 2118 217 93 20 chr13 36588277 36588560 -65284609 - L1ME2 LINE L1 -174 5990 5729 1936 147 0 3 chr13 36588560 36588853 -65284316 - AluSx SINE Alu -20 292 1 2118 217 93 20 chr13 36588853 36589311 -65283858 - L1ME2 LINE L1 -435 5729 5196 1947 176 10 55 chr13 36589314 36589820 -65283349 - L1MC2 LINE L1 -13 6331 5849 1622 214 74 24 chr13 36590238 36590659 -65282510 + L1ME3 LINE L1 5484 5925 -237 583 217 22 109 chr13 36590733 36591000 -65282169 + L1ME3 LINE L1 5911 6154 -8 457 241 94 29 chr13 36591042 36591212 -65281957 + MIR SINE MIR 66 246 -16 297 330 165 0 chr13 36593051 36593166 -65280003 - MIR SINE MIR -73 189 56 1308 204 42 92 chr13 36594930 36595387 -65277782 - MER63B DNA MER1_type 0 436 3 1446 164 174 0 chr13 36595571 36595882 -65277287 + MER47A DNA MER2_type 2 366 0 193 304 165 9 chr13 36596072 36596187 -65276982 + L2 LINE L2 3169 3301 -12 622 221 13 20 chr13 36597328 36597477 -65275692 + L1M4 LINE L1 14 161 -6381 478 248 13 13 chr13 36597506 36597663 -65275506 - L1MB7 LINE L1 -3 6181 6025 1776 168 14 7 chr13 36597663 36597955 -65275214 + AluJb SINE Alu 1 294 -18 1439 95 5 0 chr13 36597992 36598182 -65274987 - AluSx SINE Alu -110 202 12 21 0 0 0 chr13 36598200 36598221 -65274948 + AT_rich Low_complexity Low_complexity 1 21 0 1521 316 92 68 chr13 36599341 36600426 -65272743 + ERVL LTR ERVL 1286 2412 -3352 1564 132 14 14 chr13 36600426 36600706 -65272463 - L1MA5A LINE L1 -5 6292 6013 1521 316 92 68 chr13 36600706 36600997 -65272172 + ERVL LTR ERVL 2412 2695 -3069 555 318 66 37 chr13 36601513 36602019 -65271150 + ERVL LTR ERVL 3375 4221 -1455 1309 140 115 0 chr13 36602117 36602352 -65270817 + MER2 DNA MER2_type 1 262 -83 431 339 103 9 chr13 36602381 36602614 -65270555 + ERVL LTR ERVL 4322 4576 -1188 615 169 16 0 chr13 36602639 36602763 -65270406 + L1MA3 LINE L1 5892 6017 -288 1272 136 0 0 chr13 36602772 36602986 -65270183 + L1MA4 LINE L1 6087 6300 0 725 356 41 41 chr13 36603003 36603691 -65269478 + ERVL LTR ERVL 4654 5341 -423 360 300 75 0 chr13 36603918 36604038 -65269131 + LTR16C LTR ERVL 361 489 -2 1767 159 36 6 chr13 36604227 36604585 -65268584 - L1MA8 LINE L1 -5 6286 5918 424 288 114 74 chr13 36604686 36605064 -65268105 + MLT1J LTR MaLR 116 508 -3 672 327 71 0 chr13 36605070 36605367 -65267802 + L2 LINE L2 2860 3177 -136 721 186 11 40 chr13 36605571 36605748 -65267421 + L1MA10 LINE L1 6151 6322 -12 1437 233 126 28 chr13 36606318 36606927 -65266242 - L1ME3A LINE L1 -21 6143 5453 6920 61 5 7 chr13 36607004 36608169 -65265000 - L1PA8 LINE L1 -17 6155 4990 1288 99 0 0 chr13 36608171 36608352 -65264817 + L1PA8 LINE L1 4808 4988 -1158 305 218 35 23 chr13 36608348 36608435 -65264734 - L1P LINE L1 -768 5398 5311 * 186 43 0 0 chr13 36608439 36608462 -65264707 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 290 111 95 0 chr13 36608465 36608528 -65264641 - L1MC2 LINE L1 -1 6343 6275 372 296 94 5 chr13 36608542 36608745 -65264424 - L1ME3A LINE L1 -862 5284 5064 733 277 61 24 chr13 36608786 36609162 -65264007 - L1M4 LINE L1 -789 5357 4968 2000 251 69 8 chr13 36609355 36610005 -65263164 + L1M4 LINE L1 3196 3885 -2261 1557 266 65 7 chr13 36609983 36610548 -65262621 + L1M4 LINE L1 4171 4768 -1378 * 2662 42 0 0 chr13 36610552 36610863 -65262306 + AluY SINE Alu 1 311 0 364 280 136 0 chr13 36611381 36611513 -65261656 + MIR SINE MIR 113 262 0 294 29 0 0 chr13 36611844 36611879 -65261290 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 198 71 0 0 chr13 36611880 36611908 -65261261 + (CCTA)n Simple_repeat Simple_repeat 1 28 0 2223 93 28 0 chr13 36611927 36612216 -65260953 + AluSq SINE Alu 1 297 -16 1271 184 4 4 chr13 36612425 36612696 -65260473 + AluSx SINE Alu 44 314 0 339 256 123 2 chr13 36612716 36612889 -65260280 + L1MEc LINE L1 660 836 -5234 * 433 226 0 0 chr13 36612884 36612990 -65260179 + L1M4 LINE L1 4465 4570 -1576 1844 280 81 15 chr13 36613029 36613634 -65259535 + L1MDa LINE L1 18 839 -5701 1396 196 33 6 chr13 36613649 36613981 -65259188 + L1MDa LINE L1 1831 2171 -4369 1155 218 66 36 chr13 36614502 36614942 -65258227 + L1MDa LINE L1 2153 2605 -3935 23 0 0 0 chr13 36615099 36615122 -65258047 + AT_rich Low_complexity Low_complexity 1 23 0 377 99 84 28 chr13 36615142 36615213 -65257956 + L1MA1 LINE L1 6228 6302 0 260 200 0 0 chr13 36615229 36615274 -65257895 - L1MA2 LINE L1 -84 6220 6176 436 133 0 0 chr13 36615375 36615450 -65257719 + L1MA1 LINE L1 6228 6302 0 4390 107 19 12 chr13 36615463 36616147 -65257022 - L1MA2 LINE L1 -84 6220 5532 7019 224 13 6 chr13 36616248 36618077 -65255092 + L1M4 LINE L1 1883 3714 -2432 962 135 0 29 chr13 36618077 36618247 -65254922 - L1 LINE L1 -1472 4674 4510 351 163 105 0 chr13 36618256 36618342 -65254827 + L1M4 LINE L1 4454 4548 -1598 401 218 199 44 chr13 36618518 36618611 -65254558 - L1M4 LINE L1 -1543 4603 4526 1029 60 27 0 chr13 36618611 36618761 -65254408 + L1PA4 LINE L1 6002 6155 0 401 218 199 44 chr13 36618761 36618988 -65254181 - L1M4 LINE L1 -1620 4526 4233 327 272 125 46 chr13 36618972 36619147 -65254022 - L1MEc LINE L1 -4949 2173 2013 * 261 0 0 0 chr13 36619147 36619176 -65253993 + (TG)n Simple_repeat Simple_repeat 2 30 0 327 272 125 46 chr13 36619176 36619503 -65253666 - L1MEc LINE L1 -5109 2013 1631 2161 111 10 7 chr13 36619569 36619876 -65253293 - AluSq SINE Alu -5 308 1 333 208 0 14 chr13 36619882 36619954 -65253215 - L1MEc LINE L1 -5075 1348 1278 257 231 0 0 chr13 36620127 36620179 -65252990 + LTR30 LTR ERV1 1 52 -670 1898 100 243 182 chr13 36620181 36620859 -65252310 + LTR12 LTR ERV1 57 2361 -77 977 199 36 0 chr13 36621568 36621764 -65251405 + MER3 DNA MER1_type 2 204 -5 26 0 0 0 chr13 36622143 36622169 -65251000 + AT_rich Low_complexity Low_complexity 1 26 0 973 282 90 40 chr13 36622485 36622993 -65250176 - L2 LINE L2 -3 3310 2777 1996 262 75 35 chr13 36623050 36623858 -65249311 - L2 LINE L2 -1185 2129 1289 248 366 88 16 chr13 36624598 36624904 -65248265 - L2 LINE L2 -947 2367 2040 559 277 31 65 chr13 36624979 36625271 -65247898 + MLT1I LTR MaLR 108 389 -20 525 296 66 10 chr13 36625863 36626103 -65247066 + MIR SINE MIR 9 260 -2 460 76 0 15 chr13 36626254 36626320 -65246849 - AluSc SINE Alu -14 295 231 505 185 74 30 chr13 36626449 36626584 -65246585 + LTR16A LTR ERVL 309 449 -1 236 324 111 11 chr13 36626607 36626719 -65246450 - MLT1J1 LTR MaLR -230 220 98 26 0 0 0 chr13 36627403 36627429 -65245740 + AT_rich Low_complexity Low_complexity 1 26 0 1683 176 7 0 chr13 36627754 36628033 -65245136 - AluJb SINE Alu -31 281 1 204 290 29 0 chr13 36628724 36628793 -65244376 + (TTTA)n Simple_repeat Simple_repeat 4 74 0 318 277 80 66 chr13 36628803 36628940 -65244229 + L2 LINE L2 3171 3309 -4 428 273 129 21 chr13 36628951 36629145 -65244024 + MLT1J LTR MaLR 1 215 -296 678 279 105 0 chr13 36629242 36629461 -65243708 - L1ME3 LINE L1 -15 6147 5906 343 205 24 34 chr13 36629462 36629607 -65243562 - LTR50 LTR ERVL -2 793 637 378 285 36 54 chr13 36629881 36630102 -65243067 - LTR41 LTR ERVL -556 217 1 231 195 39 91 chr13 36631347 36631424 -65241745 + MER91B DNA MER1_type 1 73 -117 727 88 0 0 chr13 36632168 36632270 -65240899 - MLT2C2 LTR ERVL -361 103 2 24 0 0 0 chr13 36632293 36632317 -65240852 + AT_rich Low_complexity Low_complexity 1 24 0 232 211 113 42 chr13 36633353 36633424 -65239745 - MIR SINE MIR -108 154 79 832 113 8 8 chr13 36633627 36633760 -65239409 + L1MA3 LINE L1 6173 6305 0 705 296 105 4 chr13 36634395 36634476 -65238693 - MLT1L LTR MaLR 0 615 544 770 234 61 5 chr13 36634476 36634673 -65238496 + MER63A DNA MER1_type 1 208 -2 705 296 105 4 chr13 36634673 36634858 -65238311 - MLT1L LTR MaLR -71 544 322 498 333 31 0 chr13 36635181 36635343 -65237826 + MIR3 SINE MIR 14 180 -28 195 226 22 109 chr13 36635392 36635494 -65237675 + MIR SINE MIR 74 165 -75 500 79 53 0 chr13 36635564 36635640 -65237529 + MADE1 DNA Mariner 1 80 0 2656 241 43 19 chr13 36636262 36636999 -65236170 + L1M4 LINE L1 3638 4392 -1754 1428 159 31 72 chr13 36636991 36637232 -65235937 + L1MB5 LINE L1 5867 6093 -81 * 2346 98 0 0 chr13 36637232 36637527 -65235642 + AluSx SINE Alu 1 295 -17 1428 159 31 72 chr13 36637527 36637606 -65235563 + L1MB5 LINE L1 6093 6174 0 21 0 0 0 chr13 36637643 36637664 -65235505 + AT_rich Low_complexity Low_complexity 1 21 0 571 273 65 22 chr13 36637730 36638086 -65235083 + L1M4 LINE L1 2194 2564 -3582 25 0 0 0 chr13 36638649 36638674 -65234495 + AT_rich Low_complexity Low_complexity 1 25 0 627 279 28 12 chr13 36638732 36638986 -65234183 - MIR SINE MIR -1 261 4 369 277 22 66 chr13 36639041 36639178 -65233991 - MIR3 SINE MIR -64 144 14 272 216 41 10 chr13 36639660 36639757 -65233412 + (TA)n Simple_repeat Simple_repeat 1 100 0 3773 223 48 15 chr13 36640136 36641192 -65231977 + L1M4 LINE L1 3683 4773 -1373 2034 153 7 0 chr13 36642376 36642683 -65230486 - AluJo SINE Alu -3 309 1 4515 64 7 7 chr13 36642707 36643302 -65229867 - L1PA7 LINE L1 -3 6151 5557 975 172 73 1 chr13 36643367 36643566 -65229603 + L1MA7 LINE L1 6031 6248 -43 2164 112 3 7 chr13 36643566 36643870 -65229299 + AluSq SINE Alu 1 303 -10 975 172 73 1 chr13 36643870 36643889 -65229280 + L1MA7 LINE L1 6248 6264 -27 239 256 35 0 chr13 36643932 36644018 -65229151 - L1MC4 LINE L1 -1339 6703 6615 2090 131 0 51 chr13 36644083 36644435 -65228734 - MER1B DNA MER1_type -5 334 1 2122 68 79 7 chr13 36645772 36646052 -65227117 - AluY SINE Alu -11 300 1 1082 224 102 41 chr13 36649253 36649548 -65223621 + MLT1A1 LTR MaLR 1 313 -52 5501 104 10 2 chr13 36649557 36650358 -65222811 - L1PA15 LINE L1 -21 6144 5338 383 281 228 5 chr13 36650366 36650590 -65222579 - L2 LINE L2 -606 2708 2435 26 0 0 0 chr13 36650896 36650922 -65222247 + AT_rich Low_complexity Low_complexity 1 26 0 306 329 2 29 chr13 36651137 36651287 -65221882 - MIR SINE MIR -62 146 22 309 245 170 0 chr13 36653003 36653109 -65220060 - MIR SINE MIR -34 228 105 330 262 0 0 chr13 36703913 36703974 -65169195 - MER81 DNA DNA -49 65 5 1017 269 112 44 chr13 36706217 36706715 -65166454 - L2 LINE L2 0 3313 2795 2564 167 16 7 chr13 36706719 36707168 -65166001 + MLT1C LTR MaLR 10 462 -5 1200 225 50 104 chr13 36707173 36707692 -65165477 - L2 LINE L2 -517 2797 2307 335 317 58 0 chr13 36709576 36709680 -65163489 - MIR SINE MIR -69 139 30 21 36 0 0 chr13 36710078 36710106 -65163063 + AT_rich Low_complexity Low_complexity 1 28 0 258 136 0 0 chr13 36710176 36710220 -65162949 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 233 342 27 77 chr13 36710489 36710787 -65162382 - L2 LINE L2 -337 2977 2695 482 118 0 118 chr13 36710900 36711104 -65162065 + (TA)n Simple_repeat Simple_repeat 1 180 0 270 0 0 0 chr13 36711224 36711254 -65161915 + (TA)n Simple_repeat Simple_repeat 2 31 0 1209 242 121 22 chr13 36712335 36712590 -65160579 - MLT1D LTR MaLR -5 500 272 369 75 0 0 chr13 36712590 36712643 -65160526 + (TG)n Simple_repeat Simple_repeat 1 53 0 1209 242 121 22 chr13 36712643 36712842 -65160327 - MLT1D LTR MaLR -233 272 1 732 277 55 8 chr13 36713312 36713547 -65159622 - MIR SINE MIR 0 262 17 22 70 0 0 chr13 36714028 36714071 -65159098 + AT_rich Low_complexity Low_complexity 1 43 0 306 292 115 0 chr13 36714814 36714910 -65158259 - L2 LINE L2 0 3313 3207 * 1346 261 77 11 chr13 36714901 36715354 -65157815 - L2 LINE L2 -985 2329 1847 1815 280 77 20 chr13 36715355 36716016 -65157153 - L2 LINE L2 -641 2673 1975 28 48 0 0 chr13 36716275 36716317 -65156852 + AT_rich Low_complexity Low_complexity 1 42 0 485 294 132 51 chr13 36716425 36716857 -65156312 - MLT1K LTR MaLR 0 588 122 224 292 69 42 chr13 36718712 36718856 -65154313 + L3 LINE CR1 1424 1571 -6 21 36 0 0 chr13 36719028 36719056 -65154113 + AT_rich Low_complexity Low_complexity 1 28 0 226 204 0 0 chr13 36719207 36719251 -65153918 - L1M1 LINE L1 -739 5561 5518 1047 271 68 39 chr13 36719823 36720395 -65152774 - HAL1b LINE L1 -512 836 248 1891 149 7 3 chr13 36720466 36720755 -65152414 - AluSx SINE Alu -22 290 1 201 208 21 0 chr13 36721193 36721241 -65151928 + T-rich Low_complexity Low_complexity 1 49 0 198 71 0 0 chr13 36721322 36721350 -65151819 + (TG)n Simple_repeat Simple_repeat 1 28 0 807 181 96 11 chr13 36721351 36721528 -65151641 - L1PB4 LINE L1 -1 6155 5964 2339 112 3 0 chr13 36722043 36722382 -65150787 - L1PB3 LINE L1 -3 6151 5812 783 273 32 9 chr13 36722766 36722982 -65150187 + MER58A DNA MER1_type 2 222 -2 189 318 57 57 chr13 36724425 36724513 -65148656 - MIR SINE MIR -19 243 156 1871 190 77 31 chr13 36724735 36725257 -65147912 - L1ME3A LINE L1 -1 6169 5624 237 235 18 127 chr13 36725320 36725401 -65147768 + MER5B DNA MER1_type 31 87 -91 1811 194 132 14 chr13 36725401 36725834 -65147335 - MER66B LTR ERV1 0 486 3 237 235 18 127 chr13 36725834 36725918 -65147251 + MER5B DNA MER1_type 87 178 0 3065 29 0 13 chr13 36726055 36726429 -65146740 - L1PA4 LINE L1 -2 6153 5785 422 276 152 0 chr13 36726789 36726934 -65146235 + MIR SINE MIR 84 250 -12 1048 209 0 15 chr13 36727543 36727744 -65145425 - AluJo SINE Alu -32 280 83 2651 142 85 6 chr13 36728698 36729218 -65143951 - L1MC1 LINE L1 0 6333 5773 2243 228 83 40 chr13 36729249 36730286 -65142883 - L1MDa LINE L1 -1889 4651 3571 * 4970 165 35 13 chr13 36730279 36731653 -65141516 - L1PA16 LINE L1 0 6166 4752 2303 88 0 26 chr13 36731653 36731961 -65141208 - AluY SINE Alu -11 300 1 4970 165 35 13 chr13 36731961 36732247 -65140922 - L1PA16 LINE L1 -1414 4752 4474 4884 217 21 49 chr13 36732221 36733848 -65139321 - L1MDa LINE L1 -2385 4155 2574 * 2387 84 0 10 chr13 36733848 36734158 -65139011 - AluY SINE Alu -4 307 1 650 156 66 25 chr13 36734177 36734299 -65138870 + Charlie3 DNA MER1_type 1 127 -2583 478 181 71 0 chr13 36734301 36734456 -65138713 - L1MDa LINE L1 -3949 2591 2426 318 186 0 0 chr13 36734456 36734515 -65138654 - AluJb SINE Alu -4 297 239 * 331 125 0 111 chr13 36734514 36734586 -65138583 - AluJb SINE Alu -155 147 84 1303 161 99 3 chr13 36734586 36734909 -65138260 - L1MDa LINE L1 -4106 2434 2081 1202 244 32 21 chr13 36734973 36735404 -65137765 - L1MDa LINE L1 -3126 3414 2979 5578 200 109 61 chr13 36735407 36736456 -65136713 - L1MDa LINE L1 -4527 2013 831 1930 129 60 60 chr13 36736456 36736820 -65136349 + THE1B LTR MaLR 1 364 0 5578 200 109 61 chr13 36736820 36737674 -65135495 - L1MDa LINE L1 -5709 831 19 2222 113 12 134 chr13 36737889 36738395 -65134774 + MLT2A1 LTR ERVL 1 444 0 24 77 0 0 chr13 36738559 36738611 -65134558 + AT_rich Low_complexity Low_complexity 1 52 0 2707 279 130 32 chr13 36738999 36740587 -65132582 - L2 LINE L2 -2 3311 1564 182 173 0 19 chr13 36740610 36740662 -65132507 + A-rich Low_complexity Low_complexity 2 52 0 2099 127 3 3 chr13 36740973 36741272 -65131897 + AluSg SINE Alu 1 299 -11 400 262 10 0 chr13 36741461 36741564 -65131605 + MLT1K LTR MaLR 484 587 -1 21 0 0 0 chr13 36741581 36741602 -65131567 + AT_rich Low_complexity Low_complexity 1 21 0 2013 107 64 0 chr13 36741653 36741934 -65131235 + AluSx SINE Alu 5 303 -9 776 240 6 6 chr13 36742957 36743136 -65130033 + MLT1A2 LTR MaLR 194 372 -2 795 251 122 43 chr13 36743142 36743536 -65129633 - L1MDb LINE L1 -5212 1197 773 4231 174 51 10 chr13 36743632 36744797 -65128372 - L1MB1 LINE L1 -1 6167 4951 816 237 61 5 chr13 36745202 36745400 -65127769 - MER58A DNA MER1_type -15 209 1 1778 110 15 157 chr13 36745494 36745895 -65127274 - LTR14B LTR ERVK 0 608 1 216 271 0 34 chr13 36746873 36746932 -65126237 + GA-rich Low_complexity Low_complexity 4 60 0 30 0 0 0 chr13 36746972 36747002 -65126167 + AT_rich Low_complexity Low_complexity 1 30 0 245 127 18 55 chr13 36747006 36747061 -65126108 - MER4D LTR ERV1 0 903 851 15796 129 53 138 chr13 36747063 36748188 -65124981 + L1MA3 LINE L1 17 1237 -6328 4221 137 19 88 chr13 36748188 36749071 -65124098 - LTR12 LTR ERV1 0 826 5 15796 129 53 138 chr13 36749071 36750964 -65122205 + L1MA3 LINE L1 1237 3291 -4274 180 0 0 0 chr13 36750964 36750984 -65122185 + (TG)n Simple_repeat Simple_repeat 1 20 0 15796 129 53 138 chr13 36750984 36752061 -65121108 + L1MA3 LINE L1 3291 3695 -3870 2418 73 0 7 chr13 36752061 36752361 -65120808 + AluY SINE Alu 1 298 -13 15796 129 53 138 chr13 36752361 36752814 -65120355 + L1MA3 LINE L1 3695 4185 -3380 1311 114 0 114 chr13 36752814 36753042 -65120127 + AluSg/x SINE Alu 82 283 -29 6509 177 30 48 chr13 36753067 36754727 -65118442 + L1MA3 LINE L1 4195 5824 -1741 541 182 91 0 chr13 36754763 36754884 -65118285 + L1MA3 LINE L1 7311 7442 -282 6798 57 11 0 chr13 36754905 36756302 -65116867 + L1PA7 LINE L1 4737 6152 -2 1209 147 56 4 chr13 36756356 36756607 -65116562 + L1MA3 LINE L1 7461 7724 0 2981 131 25 21 chr13 36756631 36756923 -65116246 + MER75 DNA T2_type 1 290 -224 1987 144 39 36 chr13 36756923 36757284 -65115885 - THE1B LTR MaLR 0 364 3 10612 104 24 37 chr13 36757286 36758886 -65114283 - THE1B-int LTR MaLR 0 1580 2 1985 128 60 28 chr13 36758887 36759240 -65113929 - THE1B LTR MaLR 0 364 1 2981 131 25 21 chr13 36759240 36759453 -65113716 + MER75 DNA T2_type 289 513 -1 1196 246 24 27 chr13 36759460 36759571 -65113598 - MER4D LTR ERV1 -36 867 757 3372 126 73 9 chr13 36759571 36760144 -65113025 + MER4B LTR ERV1 1 610 0 1196 246 24 27 chr13 36760144 36760362 -65112807 - MER4D LTR ERV1 -146 757 539 1875 195 73 47 chr13 36760365 36761061 -65112108 - LTR49 LTR ERV1 -23 572 20 1004 273 16 4 chr13 36761151 36761400 -65111769 + MIR SINE MIR 6 257 -5 1739 258 60 22 chr13 36762028 36762638 -65110531 + MER21B LTR ERV1 126 855 -76 253 297 167 36 chr13 36762918 36763056 -65110113 - L2 LINE L2 0 3313 3158 2239 120 13 0 chr13 36764794 36765103 -65108066 + AluSq SINE Alu 1 313 0 1344 278 35 51 chr13 36765136 36765980 -65107189 + L1MC4 LINE L1 7212 8042 0 24 0 0 0 chr13 36766046 36766070 -65107099 + AT_rich Low_complexity Low_complexity 1 24 0 2308 101 10 0 chr13 36766747 36767054 -65106115 + AluSg SINE Alu 1 310 0 241 215 69 169 chr13 36767162 36767292 -65105877 - L1ME3 LINE L1 -88 6074 5958 383 149 14 0 chr13 36767372 36767446 -65105723 + (TA)n Simple_repeat Simple_repeat 2 76 0 1445 239 114 42 chr13 36767496 36768327 -65104842 - L1MC5 LINE L1 -438 7523 6633 276 331 122 9 chr13 36768690 36769125 -65104044 - HAL1b LINE L1 -588 760 277 2998 166 40 26 chr13 36769368 36769987 -65103182 - L1MC1 LINE L1 0 6333 5706 1252 127 15 0 chr13 36769994 36770199 -65102970 - L1MC1 LINE L1 -693 5640 5433 604 194 219 12 chr13 36770217 36770377 -65102792 - 7SK RNA RNA 0 193 1 308 259 35 0 chr13 36770659 36770744 -65102425 + MIR SINE MIR 66 153 -109 2100 121 0 0 chr13 36771745 36772027 -65101142 + AluSx SINE Alu 1 282 -30 205 211 0 0 chr13 36772041 36772079 -65101090 + (TA)n Simple_repeat Simple_repeat 1 38 0 263 225 27 88 chr13 36772754 36772941 -65100228 + L1MC3 LINE L1 6708 6771 -1014 783 184 0 22 chr13 36772978 36773114 -65100055 + FLAM_C SINE Alu 1 133 0 1048 115 204 0 chr13 36773588 36773779 -65099390 - MER30 DNA MER1_type 0 230 1 2207 105 3 3 chr13 36773837 36774142 -65099027 + AluSx SINE Alu 1 305 -7 541 213 71 38 chr13 36775700 36775883 -65097286 + LTR50 LTR ERVL 15 203 -592 451 309 57 17 chr13 36775894 36776069 -65097100 - MIR SINE MIR -80 182 1 688 300 50 0 chr13 36776169 36776369 -65096800 - MER63A DNA MER1_type 0 210 1 378 240 145 0 chr13 36777027 36777206 -65095963 - LTR40c LTR ERVL -106 359 155 429 315 21 0 chr13 36777427 36777570 -65095599 - HERVL40 LTR ERVL -138 5392 5247 2030 264 22 52 chr13 36777934 36778627 -65094542 - HERVL40 LTR ERVL -356 5174 4503 330 357 18 4 chr13 36779091 36779318 -65093851 - HERVL40 LTR ERVL -1545 3985 3756 2620 56 0 0 chr13 36779753 36780056 -65093113 + AluY SINE Alu 1 303 -8 429 268 81 30 chr13 36780690 36780925 -65092244 - LTR40c LTR ERVL -50 415 169 2096 101 21 3 chr13 36782332 36782497 -65090672 - AluSg SINE Alu -18 292 118 477 0 0 0 chr13 36782497 36782550 -65090619 + (TG)n Simple_repeat Simple_repeat 2 54 0 2096 101 21 3 chr13 36782550 36782671 -65090498 - AluSg SINE Alu -192 118 1 357 269 160 32 chr13 36783723 36783852 -65089317 + L1ME4a LINE L1 5666 5777 -344 2147 114 3 3 chr13 36783852 36784141 -65089028 + AluSx SINE Alu 1 289 -23 213 65 0 0 chr13 36784141 36784172 -65088997 + (TA)n Simple_repeat Simple_repeat 1 31 0 357 269 160 32 chr13 36784172 36784260 -65088909 + L1ME4a LINE L1 5776 5912 -209 327 157 0 0 chr13 36784570 36784640 -65088529 + (TA)n Simple_repeat Simple_repeat 1 70 0 1712 172 59 3 chr13 36784643 36784981 -65088188 - MLT2C1 LTR ERVL -40 357 1 272 341 71 56 chr13 36785115 36785367 -65087802 + L2 LINE L2 2722 2977 -337 1013 317 38 31 chr13 36786511 36787115 -65086054 + L1MB1 LINE L1 416 922 -5381 2460 241 147 23 chr13 36787285 36787490 -65085679 + L1MB1 LINE L1 800 978 -5404 2474 72 0 3 chr13 36787490 36787797 -65085372 + AluY SINE Alu 1 306 -5 2460 241 147 23 chr13 36787797 36788658 -65084511 + L1MB1 LINE L1 978 1731 -4651 1437 113 13 22 chr13 36788658 36788888 -65084281 + L1PA10 LINE L1 5929 6156 -12 2460 241 147 23 chr13 36788888 36789090 -65084079 + L1MB1 LINE L1 1731 1907 -4475 1900 113 59 48 chr13 36789090 36789461 -65083708 + THE1C LTR MaLR 1 375 0 2460 241 147 23 chr13 36789461 36789862 -65083307 + L1MB1 LINE L1 1907 2561 -3821 4516 166 43 15 chr13 36789872 36790904 -65082265 - L1MA7 LINE L1 -31 6260 5207 1096 228 50 0 chr13 36790904 36791281 -65081888 + L1MB1 LINE L1 3101 3496 -2886 3391 22 7 0 chr13 36791401 36791813 -65081356 - L1P2 LINE L1 -335 5819 5405 2387 99 0 0 chr13 36791815 36792148 -65081021 - THE1C LTR MaLR -42 333 1 6235 190 55 76 chr13 36792148 36794145 -65079024 + L1MB1 LINE L1 3572 5526 -856 2793 200 84 10 chr13 36794146 36794862 -65078307 + L1MB1 LINE L1 5628 6396 -8 2246 132 11 11 chr13 36795098 36795478 -65077691 - L1MC1 LINE L1 -17 6316 5937 225 139 0 0 chr13 36797246 36797282 -65075887 - Alu SINE Alu -8 294 259 2148 117 7 0 chr13 36797324 36797615 -65075554 - AluSx SINE Alu -18 294 2 385 313 172 12 chr13 36798593 36798756 -65074413 - MER5A DNA MER1_type 0 189 1 1947 148 21 0 chr13 36798801 36799092 -65074077 - AluSx SINE Alu -15 297 1 1203 153 76 8 chr13 36799197 36799446 -65073723 - L1MA9 LINE L1 -2 6310 6045 1179 170 60 0 chr13 36799766 36800001 -65073168 - L1MC2 LINE L1 -490 5854 5606 387 232 67 89 chr13 36800014 36800238 -65072931 - MLT1I LTR MaLR -62 347 129 2461 155 23 46 chr13 36801289 36801442 -65071727 + MLT1C LTR MaLR 1 156 -311 2228 115 0 0 chr13 36801442 36801737 -65071432 - AluSc SINE Alu -14 295 1 2461 155 23 46 chr13 36801737 36802061 -65071108 + MLT1C LTR MaLR 156 467 0 314 235 182 8 chr13 36802248 36802380 -65070789 - MLT1I LTR MaLR -5 404 250 1384 227 48 23 chr13 36802550 36802902 -65070267 - MLT1A1 LTR MaLR 0 365 5 366 306 272 18 chr13 36803000 36803470 -65069699 - L2 LINE L2 -2 3311 2736 386 234 65 16 chr13 36803478 36803602 -65069567 - LTR16A LTR ERVL -320 130 1 677 288 40 18 chr13 36804888 36805110 -65068059 + MIR SINE MIR 10 236 -26 317 231 91 74 chr13 36805219 36805340 -65067829 - MIR SINE MIR -70 138 16 26 0 0 0 chr13 36805901 36805927 -65067242 + AT_rich Low_complexity Low_complexity 1 26 0 3991 114 71 6 chr13 36805927 36806587 -65066582 - L1PA16 LINE L1 -20 6146 5444 2413 100 120 15 chr13 36807933 36808381 -65064788 - Tigger3(Golem) DNA MER2_type -136 2893 2395 568 118 11 0 chr13 36808381 36808474 -65064695 - L1PA8 LINE L1 -2 6170 6077 4188 154 80 13 chr13 36810171 36810945 -65062224 - LTR1B LTR ERV1 0 826 1 2101 146 52 3 chr13 36811251 36811620 -65061549 + MLT1B LTR MaLR 1 387 -3 275 276 0 0 chr13 36814082 36814158 -65059011 + MIR SINE MIR 78 153 -109 2138 113 3 29 chr13 36814707 36815016 -65058153 + AluSx SINE Alu 1 301 -11 188 167 21 0 chr13 36815777 36815825 -65057344 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1668 159 4 0 chr13 36815832 36816109 -65057060 - L1PB4 LINE L1 -13 6143 5866 303 286 92 17 chr13 36817705 36817824 -65055345 - L2 LINE L2 -557 2757 2630 1464 190 80 3 chr13 36817839 36818164 -65055005 + AluJo SINE Alu 1 347 0 435 38 0 0 chr13 36818941 36818994 -65054175 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 402 289 61 9 chr13 36818995 36819109 -65054060 - L2 LINE L2 -14 3299 3180 673 154 7 59 chr13 36819224 36819360 -65053809 - FLAM_A SINE Alu -3 130 2 1637 172 123 0 chr13 36819780 36820106 -65053063 + MER47A DNA MER2_type 1 366 0 414 332 142 0 chr13 36820441 36820652 -65052517 - MIR SINE MIR -17 245 5 29 0 0 0 chr13 36820686 36820715 -65052454 + AT_rich Low_complexity Low_complexity 1 29 0 543 274 62 56 chr13 36821016 36821374 -65051795 + L1ME2 LINE L1 49 408 -6015 778 267 81 65 chr13 36821433 36822110 -65051059 + L1ME2 LINE L1 2080 2767 -4355 3268 238 91 73 chr13 36822172 36823655 -65049514 + L1ME2 LINE L1 3760 5294 -1647 2236 113 0 7 chr13 36823655 36823957 -65049212 + AluSx SINE Alu 1 300 -12 3268 238 91 73 chr13 36823957 36824589 -65048580 + L1ME2 LINE L1 5294 5913 -1028 1661 215 130 28 chr13 36824899 36825796 -65047373 + L1ME2 LINE L1 5967 6958 -1 233 220 30 10 chr13 36826424 36826524 -65046645 + GA-rich Low_complexity Low_complexity 4 105 0 4921 73 30 0 chr13 36826568 36827209 -65045960 - PABL_A LTR ERV1 0 660 1 472 230 148 19 chr13 36827523 36827780 -65045389 + LTR50 LTR ERVL 502 791 -4 737 263 25 48 chr13 36828427 36828681 -65044488 + MIR SINE MIR 10 252 -10 302 333 67 86 chr13 36828700 36828967 -65044202 + L2 LINE L2 3011 3272 0 1748 122 88 25 chr13 36829312 36829665 -65043504 + THE1C LTR MaLR 1 375 0 10789 22 0 0 chr13 36830694 36832714 -65040455 - L1PA3 LINE L1 -5 6150 4131 1884 239 126 11 chr13 36833098 36833630 -65039539 + MLT1E LTR MaLR 1 593 0 198 338 14 0 chr13 36834337 36834411 -65038758 - MIR SINE MIR -96 166 92 1445 157 27 53 chr13 36834695 36835071 -65038098 + L1MD2 LINE L1 5281 5646 -713 2110 190 91 18 chr13 36835088 36835603 -65037566 + L1MD2 LINE L1 5804 6356 -3 192 269 96 0 chr13 36835642 36835694 -65037475 - L2 LINE L2 -7 3265 3209 305 277 146 8 chr13 36838705 36838835 -65034334 + MIR SINE MIR 21 168 -94 917 190 6 11 chr13 36839196 36839375 -65033794 + MER5B DNA MER1_type 1 178 0 334 292 47 44 chr13 36839606 36839743 -65033426 - MIR3 SINE MIR -41 167 31 1839 201 57 55 chr13 36840146 36840659 -65032510 - MER67D LTR ERV1 0 514 1 537 267 11 61 chr13 36840808 36840988 -65032181 - MER5B DNA MER1_type -4 174 4 224 362 24 24 chr13 36840997 36841124 -65032045 - MIR SINE MIR -57 151 25 214 214 71 0 chr13 36841291 36841347 -65031822 + MIR SINE MIR 92 151 -111 195 223 0 63 chr13 36841349 36841524 -65031645 + (TA)n Simple_repeat Simple_repeat 1 164 0 354 205 0 49 chr13 36841535 36841720 -65031449 + (TA)n Simple_repeat Simple_repeat 1 176 0 273 176 0 0 chr13 36841733 36841784 -65031385 - HAL1 LINE L1 -971 1536 1486 351 0 0 0 chr13 36841830 36841869 -65031300 + (TA)n Simple_repeat Simple_repeat 1 39 0 2062 109 22 0 chr13 36842207 36842482 -65030687 - AluSp SINE Alu -28 285 5 868 297 81 62 chr13 36842486 36843263 -65029906 - L1M4 LINE L1 -928 5218 4427 339 215 51 0 chr13 36843263 36843342 -65029827 - HAL1 LINE L1 -952 1555 1473 694 111 83 19 chr13 36843751 36843859 -65029310 - FRAM SINE Alu -25 151 37 27 81 0 0 chr13 36844355 36844417 -65028752 + AT_rich Low_complexity Low_complexity 1 62 0 292 213 16 16 chr13 36844632 36844693 -65028476 - MIR SINE MIR -6 256 196 327 286 166 0 chr13 36845054 36845229 -65027940 + MIR SINE MIR 3 206 -56 918 322 122 12 chr13 36845585 36846249 -65026920 + L2 LINE L2 1396 2132 -1182 285 336 35 26 chr13 36846369 36846482 -65026687 - L2 LINE L2 -12 3260 3147 427 298 29 44 chr13 36846819 36847024 -65026145 - HAL1 LINE L1 0 2507 2306 333 259 129 0 chr13 36847073 36847243 -65025926 - HAL1 LINE L1 -276 2231 2040 307 185 0 0 chr13 36847271 36847325 -65025844 - LTR3b LTR ERVK 0 500 447 3005 116 61 4 chr13 36847325 36847782 -65025387 - LTR3b LTR ERVK -17 483 1 2141 265 65 14 chr13 36847782 36849463 -65023706 - HAL1 LINE L1 -507 2000 1 549 230 82 0 chr13 36850306 36850441 -65022728 - MIR SINE MIR -13 249 104 550 303 34 0 chr13 36851629 36851804 -65021365 + MIR SINE MIR 76 256 -6 611 345 72 14 chr13 36853546 36853908 -65019261 + L2 LINE L2 2150 2532 -782 227 357 36 54 chr13 36853916 36854084 -65019085 - L2 LINE L2 -8 3264 3100 762 277 36 9 chr13 36854130 36854350 -65018819 - MIR SINE MIR -24 238 13 24 0 0 0 chr13 36854700 36854724 -65018445 + AT_rich Low_complexity Low_complexity 1 24 0 42 82 0 0 chr13 36855222 36855320 -65017849 + AT_rich Low_complexity Low_complexity 1 98 0 1615 187 6 12 chr13 36855467 36855793 -65017376 + L1MB1 LINE L1 5799 6122 -46 608 302 210 8 chr13 36856074 36856455 -65016714 + L2 LINE L2 1901 2358 -956 924 321 113 30 chr13 36856463 36857136 -65016033 + L2 LINE L2 2569 3308 -5 339 225 7 4 chr13 36858377 36858452 -65014717 - AluJ/monomer SINE Alu -245 55 1 1913 110 0 0 chr13 36858656 36858911 -65014258 - AluSx SINE Alu -14 298 44 441 344 79 22 chr13 36859221 36859448 -65013721 + MIR SINE MIR 5 244 -18 2190 115 3 3 chr13 36859967 36860279 -65012890 + AluSq SINE Alu 1 312 -1 2363 243 60 41 chr13 36860571 36861354 -65011815 + L1MEc LINE L1 35 832 -5564 1451 209 73 6 chr13 36863836 36864180 -65008989 - MLT1A2 LTR MaLR -3 371 5 682 345 89 44 chr13 36864195 36864881 -65008288 + HAL1b LINE L1 61 777 -571 1601 152 16 0 chr13 36865004 36865247 -65007922 - AluSx SINE Alu -61 251 5 495 318 64 42 chr13 36865417 36865869 -65007300 + L1MEc LINE L1 2172 2586 -3629 1213 128 29 0 chr13 36866100 36866304 -65006865 + L1MA4A LINE L1 6086 6295 -8 543 331 61 20 chr13 36866758 36867154 -65006015 - L1MC/D LINE L1 -2143 5665 5254 2282 97 50 42 chr13 36868202 36868562 -65004607 - THE1B LTR MaLR -1 363 1 278 346 15 8 chr13 36869017 36869147 -65004022 + L2 LINE L2 3181 3311 -2 318 330 191 10 chr13 36869722 36869931 -65003238 + MIR SINE MIR 14 260 -2 805 134 76 41 chr13 36870183 36870355 -65002814 - MER53 DNA DNA -7 182 5 242 87 22 0 chr13 36870512 36870558 -65002611 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 6648 202 25 13 chr13 36870944 36873402 -64999767 - L1MB3 LINE L1 -30 6389 3902 12694 177 35 24 chr13 36873459 36875891 -64997278 - L1MB3 LINE L1 -2888 3494 1090 2111 133 10 3 chr13 36875891 36876199 -64996970 - AluSq SINE Alu -3 310 1 12694 177 35 24 chr13 36876199 36876315 -64996854 - L1MB3 LINE L1 -5292 1090 977 2066 147 3 0 chr13 36876315 36876622 -64996547 - AluSc SINE Alu -1 308 1 12694 177 35 24 chr13 36876622 36876690 -64996479 - L1MB3 LINE L1 -5405 977 911 189 0 0 0 chr13 36876690 36876711 -64996458 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 12694 177 35 24 chr13 36876711 36877531 -64995638 - L1MB3 LINE L1 -5471 911 20 29 0 0 0 chr13 36877754 36877783 -64995386 + AT_rich Low_complexity Low_complexity 1 29 0 2408 88 0 0 chr13 36878210 36878515 -64994654 + AluY SINE Alu 1 305 -6 561 224 22 117 chr13 36879465 36879688 -64993481 - MIR SINE MIR -29 233 32 1224 283 55 25 chr13 36881682 36882081 -64991088 - LTR16C LTR ERVL 0 491 81 22 70 0 0 chr13 36882655 36882698 -64990471 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 36883013 36883035 -64990134 + AT_rich Low_complexity Low_complexity 1 22 0 1550 262 26 4 chr13 36883469 36883973 -64989196 - L1P LINE L1 -2885 3261 2747 180 97 0 0 chr13 36883995 36884026 -64989143 + L2 LINE L2 2944 2974 -340 813 267 42 84 chr13 36884185 36884541 -64988628 + L2 LINE L2 2972 3312 -1 1458 205 15 0 chr13 36885043 36885311 -64987858 - AluJo SINE Alu -25 287 16 22 35 0 0 chr13 36885311 36885340 -64987829 + AT_rich Low_complexity Low_complexity 1 29 0 1497 194 4 18 chr13 36885340 36885618 -64987551 + AluJo SINE Alu 1 274 -38 1659 120 0 0 chr13 36885644 36885903 -64987266 + L1MA2 LINE L1 6046 6304 0 15722 206 50 16 chr13 36886124 36891515 -64981654 + L1PA15 LINE L1 1247 6816 0 349 242 159 17 chr13 36891625 36891857 -64981312 - MER5C DNA MER1_type 0 324 4 1856 198 17 14 chr13 36891948 36892301 -64980868 + MLT1A1 LTR MaLR 12 365 0 416 270 63 0 chr13 36892310 36892421 -64980748 + L2 LINE L2 3196 3313 0 2326 50 7 0 chr13 36892863 36893141 -64980028 + AluY SINE Alu 1 280 -31 706 43 21 0 chr13 36893047 36893141 -64980028 + AluY SINE Alu 185 300 0 181 0 0 0 chr13 36893141 36893161 -64980008 + (CAAA)n Simple_repeat Simple_repeat 1 176 0 2591 137 74 11 chr13 36894949 36895423 -64977746 - MLT1D LTR MaLR 0 505 2 281 355 63 18 chr13 36895694 36895885 -64977284 - MIR SINE MIR -57 151 3 1249 248 81 36 chr13 36897256 36897836 -64975333 - HAL1 LINE L1 -157 2350 1745 279 203 0 0 chr13 36897836 36897895 -64975274 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 233 167 0 37 chr13 36897896 36897950 -64975219 - L1MC4 LINE L1 -1339 6703 6652 1114 266 97 7 chr13 36897977 36898432 -64974737 - HAL1 LINE L1 -794 1713 1218 934 219 105 30 chr13 36898557 36898996 -64974173 + Charlie1b DNA MER1_type 51 522 -1 1523 261 125 52 chr13 36899000 36899895 -64973274 - HAL1 LINE L1 -1461 1046 87 290 267 7 7 chr13 36899901 36900036 -64973133 + (TA)n Simple_repeat Simple_repeat 1 135 0 27 49 0 0 chr13 36900501 36900542 -64972627 + AT_rich Low_complexity Low_complexity 1 41 0 189 354 0 15 chr13 36901268 36901333 -64971836 - MER5A DNA MER1_type -86 103 40 489 317 157 3 chr13 36901953 36902259 -64970910 + L3 LINE CR1 1218 1570 -7 23 0 0 0 chr13 36902416 36902439 -64970730 + AT_rich Low_complexity Low_complexity 1 23 0 1162 241 81 30 chr13 36902461 36902831 -64970338 - MSTD LTR MaLR -7 389 1 867 166 7 0 chr13 36903001 36903146 -64970023 - MER44D DNA MER2_type 0 605 588 794 166 6 103 chr13 36903146 36903321 -64969848 - FRAM SINE Alu -17 159 2 3042 196 14 2 chr13 36903321 36903909 -64969260 - MER44D DNA MER2_type -105 600 6 1459 204 36 31 chr13 36904388 36904745 -64968424 + MLT1A1 LTR MaLR 1 359 -6 234 243 129 7 chr13 36904851 36904991 -64968178 + LTR68 LTR ERV1 9 165 -575 545 348 179 14 chr13 36905499 36906535 -64966634 + L2 LINE L2 1264 2470 -844 216 0 0 0 chr13 36907078 36907102 -64966067 + (T)n Simple_repeat Simple_repeat 1 24 0 1903 216 31 13 chr13 36907762 36908210 -64964959 - LTR40b LTR ERVL -3 459 4 3134 132 8 4 chr13 36908311 36908804 -64964365 + MER41E LTR ERV1 17 511 -1 511 203 60 22 chr13 36909212 36909394 -64963775 - L1MC5 LINE L1 -34 7927 7739 333 118 0 0 chr13 36909670 36909721 -64963448 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 938 188 12 78 chr13 36910740 36910985 -64962184 - L1PA16 LINE L1 -16 6150 5922 510 112 45 0 chr13 36911894 36911983 -64961186 - L1PA16 LINE L1 -5 6161 6069 475 284 35 55 chr13 36912057 36912258 -64960911 + MIR SINE MIR 25 221 -41 429 285 233 5 chr13 36913786 36913979 -64959190 + MIR SINE MIR 20 256 -6 644 153 16 32 chr13 36914377 36914501 -64958668 - LTR54B LTR ERV1 -363 135 14 660 118 0 0 chr13 36915058 36915160 -64958009 + L1P3 LINE L1 733 834 -5041 1622 103 150 228 chr13 36915160 36915788 -64957381 + LTR12 LTR ERV1 3 581 -133 23931 144 16 15 chr13 36915789 36918065 -64955104 + L1P3 LINE L1 882 3156 -3305 828 109 16 0 chr13 36918065 36918184 -64954985 + L1PA7 LINE L1 6017 6146 -8 23931 144 16 15 chr13 36918184 36920537 -64952632 + L1P3 LINE L1 3156 5514 -947 1897 246 66 36 chr13 36920542 36920981 -64952188 - HERV15 LTR ERV1 -3686 5049 4581 2208 88 0 7 chr13 36920981 36921296 -64951873 - AluY SINE Alu 0 313 1 1897 246 66 36 chr13 36921296 36921523 -64951646 - HERV15 LTR ERV1 -4154 4581 4362 * 6164 290 33 47 chr13 36921508 36924126 -64949043 - HERV15 LTR ERV1 -5843 2583 1 622 205 136 61 chr13 36924126 36924530 -64948639 - LTR30 LTR ERV1 0 596 190 29 28 0 0 chr13 36924883 36924919 -64948250 + AT_rich Low_complexity Low_complexity 1 36 0 357 266 25 118 chr13 36925283 36925520 -64947649 - L3 LINE CR1 -303 1274 1060 246 291 66 60 chr13 36926797 36926948 -64946221 + L2 LINE L2 1752 1903 -1411 741 280 46 8 chr13 36927458 36927697 -64945472 - MIR SINE MIR 0 262 15 307 193 36 86 chr13 36928155 36928172 -64944997 - L1MA10 LINE L1 -2 6332 6316 381 239 77 81 chr13 36928172 36928464 -64944705 - L1ME1 LINE L1 -14 6152 5873 * 1371 223 43 8 chr13 36928462 36928970 -64944199 - L1ME1 LINE L1 -718 5466 4943 242 218 0 18 chr13 36929743 36929798 -64943371 + (TG)n Simple_repeat Simple_repeat 1 54 0 451 303 61 35 chr13 36930669 36930867 -64942302 - MIR SINE MIR -39 223 21 260 290 21 11 chr13 36932189 36932282 -64940887 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 233 168 10 109 chr13 36932285 36932386 -64940783 + L1MC4 LINE L1 6615 6705 -1337 322 237 44 26 chr13 36932386 36932500 -64940669 + (TATATG)n Simple_repeat Simple_repeat 6 121 0 2534 133 29 11 chr13 36932588 36933040 -64940129 - L1MA8 LINE L1 0 6291 5832 407 289 52 0 chr13 36933824 36933959 -64939210 - MIR3 SINE MIR -20 188 47 317 349 35 30 chr13 36935114 36935283 -64937886 + MIR SINE MIR 76 245 -17 432 217 78 55 chr13 36935386 36935603 -64937566 - MER112 DNA MER1_type -38 222 1 248 193 0 244 chr13 36935738 36935791 -64937378 + MIR SINE MIR 105 107 -155 2222 119 0 0 chr13 36935791 36936084 -64937085 + AluSq SINE Alu 1 293 -20 248 193 0 244 chr13 36936084 36936165 -64937004 + MIR SINE MIR 107 206 -56 223 220 242 77 chr13 36937863 36938045 -64935124 - MIR SINE MIR -50 212 1 379 276 163 26 chr13 36938329 36938593 -64934576 + MLT1L LTR MaLR 316 615 0 480 299 116 0 chr13 36939061 36939285 -64933884 - MIR SINE MIR -6 256 7 2296 86 13 0 chr13 36939616 36939918 -64933251 + AluSp SINE Alu 1 306 -7 484 290 73 13 chr13 36940031 36940334 -64932835 + L1ME4a LINE L1 5687 6007 -114 26 64 0 0 chr13 36940341 36940388 -64932781 + AT_rich Low_complexity Low_complexity 1 47 0 2160 156 30 28 chr13 36940558 36940989 -64932180 + MSTB1 LTR MaLR 1 432 0 338 309 50 83 chr13 36941206 36941569 -64931600 - L2 LINE L2 -136 3177 2827 2196 80 58 0 chr13 36943652 36943928 -64929241 - AluSg SINE Alu -18 292 1 276 141 56 14 chr13 36943935 36944006 -64929163 - L1MD3 LINE L1 0 7995 7922 476 306 102 24 chr13 36944302 36944508 -64928661 + MIR SINE MIR 28 249 -13 2519 185 67 45 chr13 36944551 36945177 -64927992 + MER82 DNA MER2_type 1 640 -13 788 291 26 0 chr13 36945450 36945677 -64927492 + MIR SINE MIR 1 233 -29 2163 120 0 3 chr13 36945893 36946343 -64926826 - AluSg1 SINE Alu 0 449 1 208 333 90 0 chr13 36946356 36946434 -64926735 + L2 LINE L2 3229 3313 0 196 316 0 18 chr13 36946642 36946699 -64926470 + MER5A DNA MER1_type 46 101 -88 375 298 8 53 chr13 36946797 36946928 -64926241 + L2 LINE L2 3189 3313 0 400 262 83 30 chr13 36947011 36947179 -64925990 - MER5A DNA MER1_type -6 183 7 1996 167 37 31 chr13 36947307 36947855 -64925314 - MLT2A2 LTR ERVL 0 554 1 9134 160 9 5 chr13 36949256 36950982 -64922187 - L1P3 LINE L1 -2692 3769 2038 741 228 6 6 chr13 36950980 36951147 -64922022 - L1P3 LINE L1 -5708 167 1 * 2034 143 10 0 chr13 36951152 36951483 -64921686 - AluSx SINE Alu 0 334 1 2050 262 92 44 chr13 36952029 36952506 -64920663 - HAL1 LINE L1 -414 2093 1640 2555 175 7 85 chr13 36952506 36953116 -64920053 + MER68 LTR ERV1 1 562 0 2050 262 92 44 chr13 36953116 36953948 -64919221 - HAL1 LINE L1 -867 1640 722 340 294 96 51 chr13 36953984 36954161 -64919008 - HAL1 LINE L1 -1885 622 438 552 282 23 53 chr13 36954303 36954565 -64918604 - HAL1 LINE L1 -2250 257 4 353 250 0 0 chr13 36954600 36954672 -64918497 + L2 LINE L2 3234 3305 -8 220 232 11 11 chr13 36954672 36954767 -64918402 + (TA)n Simple_repeat Simple_repeat 2 96 0 303 296 177 58 chr13 36954846 36954978 -64918191 - MLT1K LTR MaLR -63 525 410 1837 147 26 57 chr13 36954978 36955365 -64917804 - THE1C LTR MaLR 0 375 1 303 296 177 58 chr13 36955365 36955543 -64917626 - MLT1K LTR MaLR -178 410 178 264 237 0 82 chr13 36955553 36955650 -64917519 + MER58 DNA MER1_type 11 99 -2321 248 180 0 33 chr13 36955667 36955728 -64917441 + MER58 DNA MER1_type 2328 2386 -34 276 273 23 0 chr13 36956339 36956427 -64916742 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr13 36956427 36956448 -64916721 + (TA)n Simple_repeat Simple_repeat 1 21 0 332 266 179 23 chr13 36956674 36956892 -64916277 + L1MC4 LINE L1 5597 5848 -1960 2163 127 31 14 chr13 36956895 36957252 -64915917 + THE1B LTR MaLR 1 426 0 269 247 25 0 chr13 36957364 36957445 -64915724 + L1MC4 LINE L1 6617 6699 -1343 578 291 83 66 chr13 36957521 36958229 -64914940 + L1MC4 LINE L1 6067 6871 -1022 756 116 0 16 chr13 36958229 36958350 -64914819 + L1PA11 LINE L1 6053 6171 -3 1141 209 24 14 chr13 36958399 36958695 -64914474 - L1MA4 LINE L1 -7 6293 5995 261 215 15 0 chr13 36958753 36958818 -64914351 + L1MC5 LINE L1 7000 7065 -896 1739 189 52 6 chr13 36958906 36959255 -64913914 + MLT1A1 LTR MaLR 1 365 0 524 255 7 0 chr13 36960432 36960581 -64912588 + L1ME2 LINE L1 6008 6157 -7 454 250 8 8 chr13 36960630 36960758 -64912411 + MER103 DNA DNA 38 165 -1 765 296 79 10 chr13 36961197 36961604 -64911565 - LTR16A LTR ERVL -1 449 16 282 198 360 0 chr13 36962353 36962439 -64910730 - L2 LINE L2 0 3272 3156 562 261 122 21 chr13 36962547 36962735 -64910434 - MIR SINE MIR 0 262 56 629 336 73 13 chr13 36963049 36963287 -64909882 - MIR SINE MIR -8 254 1 535 143 29 149 chr13 36967865 36968040 -64905129 - MER5B DNA MER1_type -23 155 2 765 216 33 22 chr13 36968049 36968230 -64904939 + MER5A DNA MER1_type 1 183 -6 308 290 11 21 chr13 36970100 36970193 -64902976 - MIR SINE MIR -114 148 57 219 400 83 0 chr13 36970301 36970446 -64902723 - MIR SINE MIR -63 145 18 249 167 372 26 chr13 36970580 36970658 -64902511 - MER5B DNA MER1_type -73 105 1 2239 85 3 0 chr13 36971148 36971431 -64901738 - AluSp SINE Alu -25 288 5 627 234 151 26 chr13 36972186 36972750 -64900419 - L1MEc LINE L1 -3680 2449 1854 377 295 60 44 chr13 36972949 36973362 -64899807 - L1MEc LINE L1 -4748 1562 1143 1918 69 35 0 chr13 36973412 36973672 -64899497 - L1PA11 LINE L1 -3 6171 5903 348 289 62 62 chr13 36973677 36973902 -64899267 - L1MEc LINE L1 -5044 1075 851 2482 56 0 13 chr13 36974056 36974359 -64898810 - AluY SINE Alu -12 299 1 485 309 109 45 chr13 36975518 36975894 -64897275 + L1MC/D LINE L1 5255 5654 -2154 1404 234 13 0 chr13 36976043 36976350 -64896819 + Tigger7 DNA MER2_type 11 321 -412 829 188 18 6 chr13 36976368 36976533 -64896636 + Tigger7 DNA MER2_type 2421 2587 0 217 238 0 0 chr13 36976657 36976699 -64896470 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1854 119 0 0 chr13 36976809 36977069 -64896100 - AluY SINE Alu -5 306 47 565 244 15 0 chr13 36977143 36977278 -64895891 + Tigger7 DNA MER2_type 1 137 -2350 400 75 0 0 chr13 36977280 36977333 -64895836 - AluY SINE Alu -257 53 1 760 232 18 0 chr13 36978439 36978603 -64894566 + MIR SINE MIR 12 178 -84 409 296 210 18 chr13 36978799 36979137 -64894032 - L1M4 LINE L1 -884 5262 4860 2240 115 0 0 chr13 36980635 36980940 -64892229 - AluSx SINE Alu -7 305 1 1982 160 3 0 chr13 36981477 36981771 -64891398 - AluJb SINE Alu -15 297 3 2459 65 0 23 chr13 36984781 36985091 -64888078 + AluY SINE Alu 1 303 -8 180 0 0 0 chr13 36985091 36985111 -64888058 + (TA)n Simple_repeat Simple_repeat 2 21 0 210 369 8 25 chr13 36985224 36985346 -64887823 - L2 LINE L2 -212 3060 2941 28 0 0 0 chr13 36985989 36986017 -64887152 + AT_rich Low_complexity Low_complexity 1 28 0 203 333 13 0 chr13 36987024 36987102 -64886067 + GA-rich Low_complexity Low_complexity 2 80 0 2362 39 3 0 chr13 36987749 36988069 -64885100 + L1PA3 LINE L1 5854 6174 0 239 128 0 0 chr13 36988088 36988135 -64885034 + Charlie5 DNA MER1_type 2445 2491 -121 873 90 135 0 chr13 36988460 36988593 -64884576 + AluSp SINE Alu 137 287 -26 335 306 100 19 chr13 36991006 36991166 -64882003 - L1ME4a LINE L1 -193 5928 5756 3610 179 61 16 chr13 36991418 36992458 -64880711 - L1MB4 LINE L1 -3 6177 5093 1008 231 140 20 chr13 36993604 36993954 -64879215 - LTR40b LTR ERVL 0 462 71 712 263 115 48 chr13 36994299 36994465 -64878704 + L2 LINE L2 2958 3112 -201 2179 104 3 0 chr13 36994465 36994752 -64878417 - AluSq SINE Alu -25 288 1 712 263 115 48 chr13 36994752 36994916 -64878253 + L2 LINE L2 3112 3310 -3 284 342 42 8 chr13 36994919 36995039 -64878130 - MIR SINE MIR -130 132 9 666 227 66 10 chr13 36995738 36995936 -64877233 - MER3 DNA MER1_type 0 209 1 2463 184 64 14 chr13 36996506 36997081 -64876088 - MER67C LTR ERV1 -1 709 106 4866 74 50 9 chr13 36997093 36997833 -64875336 - L1PA13 LINE L1 -19 6144 5375 2017 133 6 22 chr13 36997840 36998157 -64875012 - AluJo SINE Alu 0 312 1 322 335 100 30 chr13 37001573 37001668 -64871501 - L2 LINE L2 -8 3305 3218 2301 100 108 8 chr13 37001668 37002057 -64871112 - MSTA LTR MaLR 0 428 1 322 335 100 30 chr13 37002057 37002262 -64870907 - L2 LINE L2 -95 3218 2984 282 372 115 9 chr13 37002656 37002987 -64870182 + L2 LINE L2 2400 2765 -549 429 329 176 16 chr13 37003212 37003701 -64869468 + L2 LINE L2 2279 2845 -469 388 310 81 83 chr13 37003731 37003884 -64869285 + L2 LINE L2 2926 3078 -194 1742 199 11 32 chr13 37003884 37004181 -64868988 + MLT1A1 LTR MaLR 1 290 -75 2220 115 3 0 chr13 37004181 37004477 -64868692 - AluSc SINE Alu -12 297 1 1742 199 11 32 chr13 37004477 37004550 -64868619 + MLT1A1 LTR MaLR 290 363 -2 388 310 81 83 chr13 37004550 37004744 -64868425 + L2 LINE L2 3078 3272 0 21 57 0 0 chr13 37005723 37005758 -64867411 + AT_rich Low_complexity Low_complexity 1 35 0 1705 175 91 32 chr13 37006252 37006693 -64866476 - MLT1C LTR MaLR 0 467 1 590 226 67 6 chr13 37007898 37008062 -64865107 + MER5B DNA MER1_type 5 178 0 345 255 43 80 chr13 37008552 37008740 -64864429 + L1M4 LINE L1 4490 4670 -1476 1525 216 34 78 chr13 37009178 37009706 -64863463 - MLT1D LTR MaLR 0 505 1 902 253 63 66 chr13 37010960 37011217 -64861952 + MIR SINE MIR 2 252 -10 807 290 137 44 chr13 37011556 37012488 -64860681 - L2 LINE L2 -1 3312 2283 420 307 95 5 chr13 37012807 37012996 -64860173 + MIR SINE MIR 49 254 -8 228 136 0 45 chr13 37013924 37013968 -64859201 + Charlie8 DNA MER1_type 34 75 -2342 252 302 0 0 chr13 37014390 37014453 -64858716 + LTR67 LTR ERVL 105 167 -390 199 283 111 30 chr13 37015244 37015343 -64857826 - MIR SINE MIR -70 192 86 1083 143 63 49 chr13 37015435 37015658 -64857511 - MER7A DNA MER2_type -121 225 2 456 215 37 0 chr13 37015662 37015769 -64857400 + Charlie1b DNA MER1_type 94 204 -319 204 40 0 0 chr13 37015828 37015853 -64857316 + (T)n Simple_repeat Simple_repeat 1 25 0 253 253 36 0 chr13 37016388 37016471 -64856698 + L1MC5 LINE L1 7840 7925 -36 421 259 118 15 chr13 37016667 37016802 -64856367 - MIR SINE MIR -111 151 3 2960 180 22 2 chr13 37018095 37018634 -64854535 - MER44D DNA MER2_type 0 605 1 409 214 9 9 chr13 37019385 37019497 -64853672 - L1MA7 LINE L1 -2 6289 6178 423 261 11 0 chr13 37019957 37020045 -64853124 + MER5B DNA MER1_type 89 177 -1 2165 112 41 22 chr13 37020250 37020617 -64852552 - THE1C LTR MaLR -1 374 1 349 384 0 0 chr13 37020837 37020949 -64852220 + MIR SINE MIR 34 145 -63 357 24 0 0 chr13 37022486 37022528 -64850641 + (TG)n Simple_repeat Simple_repeat 2 43 0 303 352 88 11 chr13 37023063 37023245 -64849924 - MIR SINE MIR -26 236 41 233 111 67 0 chr13 37024595 37024640 -64848529 + L1MC5 LINE L1 7603 7650 -311 511 201 34 20 chr13 37024802 37024951 -64848218 + L1MC5 LINE L1 7710 7860 -101 512 259 119 49 chr13 37024999 37025343 -64847826 + L1ME4a LINE L1 5743 6110 -11 210 37 0 0 chr13 37025536 37025563 -64847606 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 411 286 28 11 chr13 37027423 37027620 -64845549 - L1MEc LINE L1 -5307 1721 1375 468 325 52 11 chr13 37028012 37028280 -64844889 - L1MEc LINE L1 -5989 1149 871 1278 225 66 16 chr13 37028402 37028904 -64844265 - L1ME1 LINE L1 -5 6161 5506 21 0 0 0 chr13 37029244 37029265 -64843904 + AT_rich Low_complexity Low_complexity 1 21 0 1459 277 80 22 chr13 37029511 37030236 -64842933 + L1MC4a LINE L1 5260 6026 -1782 316 278 19 0 chr13 37031049 37031157 -64842012 + L1M4 LINE L1 4549 4658 -1488 3469 174 27 6 chr13 37031859 37032380 -64840789 - LTR51 LTR ERV1 0 671 132 180 0 0 0 chr13 37032380 37032400 -64840769 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 3469 174 27 6 chr13 37032400 37032535 -64840634 - LTR51 LTR ERV1 -539 132 1 228 59 0 0 chr13 37032868 37032902 -64840267 - MLT1D LTR MaLR 0 626 593 4449 135 88 40 chr13 37032903 37033971 -64839198 + MER52C LTR ERV1 1 1278 0 677 171 16 0 chr13 37033971 37034093 -64839076 - MLT1D LTR MaLR -34 471 348 841 261 193 20 chr13 37034094 37034488 -64838681 - L2 LINE L2 -381 2933 2472 279 78 47 31 chr13 37034506 37034570 -64838599 + GA-rich Low_complexity Low_complexity 5 69 0 558 241 0 0 chr13 37035118 37035263 -64837906 + (TA)n Simple_repeat Simple_repeat 2 146 0 359 338 48 28 chr13 37035323 37035468 -64837701 + L2 LINE L2 3125 3272 0 352 315 19 49 chr13 37035498 37035660 -64837509 + MER5A DNA MER1_type 4 160 -29 205 247 68 123 chr13 37035533 37035695 -64837474 - MER5A DNA MER1_type -27 162 10 * 263 253 40 0 chr13 37036965 37037040 -64836129 + MER103 DNA DNA 43 120 -46 941 176 0 35 chr13 37037060 37037259 -64835910 - L1MA9 LINE L1 0 6312 6121 362 301 158 5 chr13 37037546 37037755 -64835414 - MIR SINE MIR -2 260 20 312 27 0 0 chr13 37038391 37038428 -64834741 + (TG)n Simple_repeat Simple_repeat 2 38 0 496 268 163 21 chr13 37039809 37040019 -64833150 + MIR SINE MIR 15 249 -13 195 170 0 0 chr13 37040051 37040098 -64833071 + (TTG)n Simple_repeat Simple_repeat 1 47 0 618 235 8 15 chr13 37040110 37040242 -64832927 + MER58A DNA MER1_type 1 131 0 229 250 0 0 chr13 37040242 37040291 -64832878 + MER58A DNA MER1_type 172 220 -4 185 260 228 63 chr13 37042714 37042841 -64830328 - MIR3 SINE MIR -23 185 38 2271 101 0 7 chr13 37042960 37043266 -64829903 + AluSg SINE Alu 1 304 -6 298 354 0 0 chr13 37044090 37044186 -64828983 - MIR SINE MIR -117 145 50 661 313 48 10 chr13 37044251 37044459 -64828710 + MIR SINE MIR 31 246 -16 2439 264 39 62 chr13 37046506 37047880 -64825289 + L1MEc LINE L1 955 2296 -4100 1167 193 5 23 chr13 37047897 37048115 -64825054 + AluJb SINE Alu 67 280 -32 192 40 0 0 chr13 37048115 37048140 -64825029 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2470 49 0 3 chr13 37048981 37049285 -64823884 - AluY SINE Alu -8 303 1 300 224 92 92 chr13 37049582 37049756 -64823413 + MIR SINE MIR 33 206 -56 1693 158 10 43 chr13 37049821 37050125 -64823044 + AluJo SINE Alu 12 305 -7 473 261 35 26 chr13 37050125 37050240 -64822929 + L2 LINE L2 3198 3313 0 27 0 0 0 chr13 37050330 37050357 -64822812 + AT_rich Low_complexity Low_complexity 1 27 0 305 295 13 0 chr13 37050493 37050571 -64822598 + MIR SINE MIR 2 80 -182 2148 102 0 3 chr13 37050571 37050884 -64822285 + L1P3 LINE L1 5340 5651 -503 289 274 14 0 chr13 37051020 37051093 -64822076 - AluYa8 SINE Alu -96 204 131 2288 88 3 0 chr13 37052351 37052634 -64820535 + AluSq SINE Alu 1 284 -29 2323 114 0 0 chr13 37052638 37052944 -64820225 + AluSg SINE Alu 3 308 -2 315 328 0 0 chr13 37053007 37053126 -64820043 + L1ME LINE L1 5533 5651 -470 296 245 41 95 chr13 37053129 37053218 -64819951 + L1MC1 LINE L1 5611 5690 -2118 2209 102 159 8 chr13 37053218 37053590 -64819579 - MSTA LTR MaLR 0 428 1 296 245 41 95 chr13 37053590 37053647 -64819522 + L1MC1 LINE L1 5690 5749 -2059 1993 224 145 6 chr13 37053653 37054171 -64818998 + MLT1G LTR MaLR 1 590 0 360 156 0 52 chr13 37054178 37054255 -64818914 + L1MC1 LINE L1 5760 5832 -1976 295 151 2 17 chr13 37054275 37054342 -64818827 + L1MC1 LINE L1 6266 6324 -9 406 270 21 42 chr13 37054366 37054522 -64818647 + MLT1H1 LTR MaLR 1 158 -393 1811 169 91 20 chr13 37054522 37055233 -64817936 + MER21A LTR ERV1 1 925 -6 713 198 148 77 chr13 37055239 37055618 -64817551 + MLT1H1 LTR MaLR 150 555 0 840 188 3 6 chr13 37056121 37056410 -64816759 - MLT1A1 LTR MaLR 0 365 1 385 330 42 50 chr13 37056558 37056819 -64816350 - L2 LINE L2 -173 3099 2841 196 143 0 77 chr13 37056871 37056915 -64816254 + L2 LINE L2 3219 3298 -15 1984 180 12 0 chr13 37056937 37057281 -64815888 + MER7A DNA MER2_type 1 346 0 441 0 0 0 chr13 37057281 37057330 -64815839 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 2078 139 0 0 chr13 37058314 37058615 -64814554 + AluJo SINE Alu 1 301 0 1063 147 17 97 chr13 37059020 37059258 -64813911 + MER20 DNA MER1_type 1 219 0 1355 220 16 35 chr13 37059371 37059684 -64813485 + MLT1A1 LTR MaLR 1 307 -58 26 50 0 0 chr13 37059960 37060000 -64813169 + AT_rich Low_complexity Low_complexity 1 40 0 259 263 23 2 chr13 37060523 37060658 -64812511 - MER45A DNA AcHobo -8 170 3 778 241 65 28 chr13 37062121 37062337 -64810832 - MIR SINE MIR -30 232 9 202 253 38 38 chr13 37062416 37062495 -64810674 - L2 LINE L2 -466 2848 2770 22 0 0 0 chr13 37062502 37062524 -64810645 + AT_rich Low_complexity Low_complexity 1 22 0 1167 142 55 18 chr13 37062584 37062803 -64810366 + AluJb SINE Alu 81 307 -5 428 118 26 0 chr13 37063098 37063174 -64809995 + L1MB2 LINE L1 6087 6164 -7 810 214 20 25 chr13 37064018 37064214 -64808955 + AluJo SINE Alu 106 300 -12 246 32 0 0 chr13 37064355 37064386 -64808783 + (TTG)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr13 37065696 37065724 -64807445 + AT_rich Low_complexity Low_complexity 1 28 0 327 217 29 0 chr13 37065965 37066034 -64807135 + MIR SINE MIR 2 72 -190 1227 276 100 32 chr13 37067521 37068051 -64805118 + HAL1 LINE L1 1 566 -1941 882 288 97 4 chr13 37068053 37068320 -64804849 + HAL1 LINE L1 590 881 -1626 1525 228 172 27 chr13 37068371 37068403 -64804766 + HAL1 LINE L1 1020 1046 -1461 2032 114 0 84 chr13 37068403 37068735 -64804434 + AluSq SINE Alu 1 304 -9 1525 228 172 27 chr13 37068735 37069399 -64803770 + HAL1 LINE L1 1046 1817 -690 675 216 111 33 chr13 37069444 37069625 -64803544 - MER3 DNA MER1_type -14 195 1 311 148 33 0 chr13 37069961 37070022 -64803147 - L1MB1 LINE L1 -1 6167 6105 754 234 130 29 chr13 37070347 37070723 -64802446 + HAL1 LINE L1 2025 2438 -69 376 229 236 14 chr13 37072450 37072594 -64800575 - MIR3 SINE MIR -3 205 30 665 161 34 0 chr13 37073103 37073262 -64799907 + L1M4 LINE L1 5610 5777 -401 442 286 84 0 chr13 37073538 37073716 -64799453 + MER46C DNA MER2_type 127 319 -19 1308 170 0 0 chr13 37073954 37074172 -64798997 - L1PA16 LINE L1 -9 6157 5940 249 239 62 80 chr13 37074444 37074557 -64798612 - MIR SINE MIR -54 208 98 234 279 154 0 chr13 37074952 37075153 -64798016 + L1M4 LINE L1 4383 4614 -1532 551 266 81 12 chr13 37075484 37075657 -64797512 - MLT1I LTR MaLR -207 202 18 477 290 75 28 chr13 37076482 37076737 -64796432 - L1ME LINE L1 -303 5818 5552 354 66 75 9 chr13 37078738 37078844 -64794325 + (TA)n Simple_repeat Simple_repeat 2 114 0 21 36 0 0 chr13 37078923 37078951 -64794218 + AT_rich Low_complexity Low_complexity 1 28 0 846 147 6 38 chr13 37079019 37079176 -64793993 - MER46A DNA MER2_type -84 152 1 21 0 0 0 chr13 37081724 37081745 -64791424 + AT_rich Low_complexity Low_complexity 1 21 0 565 258 33 39 chr13 37081905 37082087 -64791082 - MIR SINE MIR -50 212 32 22 0 0 0 chr13 37083307 37083329 -64789840 + AT_rich Low_complexity Low_complexity 1 22 0 234 238 88 38 chr13 37083672 37083752 -64789417 + L2 LINE L2 3185 3268 -4 4174 93 27 36 chr13 37085196 37085568 -64787601 + L1PA11 LINE L1 5544 5909 -265 2218 87 21 0 chr13 37085568 37085855 -64787314 + AluY SINE Alu 1 293 -18 4174 93 27 36 chr13 37085855 37086119 -64787050 + L1PA11 LINE L1 5909 6174 0 299 292 22 22 chr13 37087482 37087571 -64785598 + L2 LINE L2 3142 3230 -42 260 273 114 11 chr13 37087619 37087707 -64785462 - MIR SINE MIR -70 138 42 27 49 0 0 chr13 37088013 37088054 -64785115 + AT_rich Low_complexity Low_complexity 1 41 0 225 191 0 0 chr13 37088290 37088337 -64784832 - MLT2F LTR ERVL -10 653 607 3056 41 0 23 chr13 37088368 37088758 -64784411 + L1PA5 LINE L1 5763 6143 -11 29 0 0 0 chr13 37088758 37088787 -64784382 + AT_rich Low_complexity Low_complexity 1 29 0 831 194 90 93 chr13 37088788 37089098 -64784071 - MLT2C1 LTR ERVL -65 332 24 1055 278 111 44 chr13 37089574 37090504 -64782665 + L1ME3A LINE L1 5176 6159 -11 1916 118 0 0 chr13 37090720 37090975 -64782194 + AluSq SINE Alu 1 255 -58 2396 97 0 0 chr13 37091247 37091555 -64781614 + AluSg SINE Alu 1 308 -2 676 272 171 9 chr13 37091925 37092485 -64780684 + L1M4 LINE L1 4258 4919 -1227 231 217 157 24 chr13 37093253 37093336 -64779833 + Charlie7 DNA MER1_type 8 101 -2511 * 370 188 38 45 chr13 37093320 37093453 -64779716 + Charlie7 DNA MER1_type 2427 2558 -54 396 0 0 0 chr13 37094072 37094116 -64779053 + (TG)n Simple_repeat Simple_repeat 1 44 0 1710 162 17 30 chr13 37094436 37094738 -64778431 + AluJo SINE Alu 1 298 -14 2112 101 42 0 chr13 37094979 37095266 -64777903 + AluSx SINE Alu 1 299 -13 231 213 27 40 chr13 37095646 37095721 -64777448 + MIR SINE MIR 135 208 -54 537 308 133 0 chr13 37095793 37096004 -64777165 + MIR SINE MIR 5 243 -19 1437 155 4 69 chr13 37096004 37096281 -64776888 - MLT2B3 LTR ERVL -2 552 294 1707 160 24 3 chr13 37096373 37096661 -64776508 - MLT2B3 LTR ERVL -260 294 1 378 354 193 17 chr13 37097130 37097907 -64775262 - L2 LINE L2 -548 2766 1853 526 292 25 0 chr13 37097928 37098048 -64775121 - L2 LINE L2 0 3313 3191 212 286 77 22 chr13 37098055 37098146 -64775023 - L2 LINE L2 -1517 1797 1702 252 0 0 0 chr13 37098675 37098703 -64774466 + (T)n Simple_repeat Simple_repeat 1 28 0 984 150 5 78 chr13 37098722 37098915 -64774254 - AluJb SINE Alu -133 179 1 1345 122 61 0 chr13 37098947 37099177 -64773992 - MSTB1 LTR MaLR 0 432 189 912 184 60 0 chr13 37099291 37099492 -64773677 - MSTB1 LTR MaLR -212 214 2 570 173 30 18 chr13 37100776 37100944 -64772225 + CT-rich Low_complexity Low_complexity 2 171 0 2181 131 0 0 chr13 37100949 37101261 -64771908 - AluSx SINE Alu 0 312 1 259 230 48 32 chr13 37101383 37101509 -64771660 - L1MEd LINE L1 -5951 168 41 370 274 32 54 chr13 37101516 37101702 -64771467 + LTR16C LTR ERVL 220 401 -90 7366 39 1 1 chr13 37102049 37103316 -64769853 + L1PA4 LINE L1 4890 6155 0 308 208 14 28 chr13 37104283 37104355 -64768814 - L2 LINE L2 -46 3267 3197 270 0 0 0 chr13 37105024 37105054 -64768115 + (TG)n Simple_repeat Simple_repeat 2 31 0 1901 158 39 6 chr13 37105107 37105443 -64767726 + MER7A DNA MER2_type 1 345 -1 187 173 39 0 chr13 37105479 37105531 -64767638 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 288 0 0 0 chr13 37105568 37105600 -64767569 + (TG)n Simple_repeat Simple_repeat 1 32 0 24 77 0 0 chr13 37105875 37105927 -64767242 + AT_rich Low_complexity Low_complexity 1 52 0 28 0 0 0 chr13 37107535 37107563 -64765606 + AT_rich Low_complexity Low_complexity 1 28 0 212 224 86 0 chr13 37107860 37107918 -64765251 - L3 LINE CR1 -176 1401 1339 1044 138 28 18 chr13 37109047 37109265 -64763904 - L1MA8 LINE L1 0 6291 6072 1387 117 5 9 chr13 37109266 37109489 -64763680 - L1MA7 LINE L1 -268 6023 5802 1796 161 0 14 chr13 37110653 37110944 -64762225 + AluJo SINE Alu 11 297 -15 544 262 102 36 chr13 37112370 37112595 -64760574 - MIR SINE MIR -19 243 4 253 309 126 80 chr13 37113071 37113378 -64759791 + L2 LINE L2 2840 3172 -100 1002 218 23 5 chr13 37113378 37113598 -64759571 + MER58A DNA MER1_type 1 224 0 253 309 126 80 chr13 37113598 37113704 -64759465 + L2 LINE L2 3172 3272 0 731 189 8 0 chr13 37121286 37121408 -64751761 + FLAM_C SINE Alu 1 123 -10 333 0 0 0 chr13 37122530 37122567 -64750602 + (CA)n Simple_repeat Simple_repeat 2 38 0 2322 108 0 13 chr13 37122589 37122903 -64750266 + AluSx SINE Alu 1 310 -2 227 227 15 0 chr13 37123670 37123736 -64749433 + GA-rich Low_complexity Low_complexity 3 69 0 21 0 0 0 chr13 37124630 37124651 -64748518 + AT_rich Low_complexity Low_complexity 1 21 0 392 213 56 69 chr13 37124854 37125070 -64748099 - L1ME4a LINE L1 -18 6103 5891 185 264 14 0 chr13 37125091 37125163 -64748006 + (TA)n Simple_repeat Simple_repeat 1 73 0 2099 103 28 0 chr13 37127607 37127897 -64745272 + AluSx SINE Alu 1 298 -14 203 167 0 0 chr13 37128085 37128121 -64745048 + T-rich Low_complexity Low_complexity 4 39 0 31 26 0 0 chr13 37128142 37128180 -64744989 + AT_rich Low_complexity Low_complexity 1 38 0 1655 132 28 68 chr13 37129557 37129882 -64743287 - AluJo SINE Alu 0 312 1 23 0 0 0 chr13 37129936 37129959 -64743210 + AT_rich Low_complexity Low_complexity 1 23 0 2049 115 31 0 chr13 37130622 37130908 -64742261 + AluSx SINE Alu 1 295 -17 1906 177 3 3 chr13 37130921 37131232 -64741937 + AluSx SINE Alu 1 311 -1 1141 133 90 5 chr13 37131291 37131502 -64741667 - L1MD1 LINE L1 -5 6237 6009 1024 99 0 0 chr13 37131502 37131633 -64741536 + AluSg/x SINE Alu 166 296 -14 655 190 11 49 chr13 37131671 37131886 -64741283 - L1MDa LINE L1 -4986 1554 1261 2025 232 75 22 chr13 37131995 37133118 -64740051 - L1MDa LINE L1 -5140 1400 19 505 260 72 22 chr13 37133697 37133878 -64739291 + L2 LINE L2 3123 3312 -1 3326 143 15 0 chr13 37133932 37134470 -64738699 - L1PA16 LINE L1 -17 6149 5604 737 208 25 44 chr13 37134908 37135067 -64738102 + FRAM SINE Alu 1 156 -10 231 147 0 0 chr13 37135071 37135105 -64738064 + Alu SINE Alu 2 35 -268 1201 179 0 5 chr13 37135108 37135309 -64737860 + AluSg/x SINE Alu 113 312 0 25 31 0 0 chr13 37135311 37135343 -64737826 + AT_rich Low_complexity Low_complexity 1 32 0 1544 180 4 0 chr13 37135506 37135756 -64737413 - AluJo SINE Alu -61 251 1 279 312 32 48 chr13 37135765 37135890 -64737279 - MIR SINE MIR -122 140 18 22 0 0 0 chr13 37137832 37137854 -64735315 + AT_rich Low_complexity Low_complexity 1 22 0 1918 145 0 0 chr13 37138888 37139170 -64733999 - AluJb SINE Alu -30 282 1 2201 117 0 0 chr13 37139258 37139558 -64733611 - AluSx SINE Alu -11 301 2 344 345 0 18 chr13 37140123 37140233 -64732936 + L2 LINE L2 3191 3298 -15 413 337 5 43 chr13 37140695 37140879 -64732290 + MER5B DNA MER1_type 1 177 -1 229 302 62 10 chr13 37140883 37140979 -64732190 + MIR SINE MIR 106 206 -56 283 299 78 0 chr13 37142060 37142185 -64730984 + MIR SINE MIR 37 170 -68 29 47 0 0 chr13 37144902 37144945 -64728224 + AT_rich Low_complexity Low_complexity 1 43 0 204 259 231 9 chr13 37147505 37147613 -64725556 + L2 LINE L2 3178 3309 -4 241 387 104 6 chr13 37148029 37148393 -64724776 - L2 LINE L2 -839 2475 2076 201 222 0 0 chr13 37150290 37150326 -64722843 + polypyrimidine Low_complexity Low_complexity 1 36 0 286 317 126 15 chr13 37150939 37151138 -64722031 - MIR SINE MIR -36 226 6 338 336 103 63 chr13 37151477 37152159 -64721010 + L2 LINE L2 2551 3256 -16 185 0 40 0 chr13 37154983 37155008 -64718161 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2019 89 0 62 chr13 37155015 37155307 -64717862 - AluSx SINE Alu -38 274 1 1833 179 3 10 chr13 37155355 37155662 -64717507 + AluJb SINE Alu 1 305 -7 1958 81 77 0 chr13 37156178 37156438 -64716731 - AluSg SINE Alu -30 280 1 528 305 126 0 chr13 37157552 37157775 -64715394 + MIR SINE MIR 1 251 -11 30 0 0 0 chr13 37158264 37158294 -64714875 + AT_rich Low_complexity Low_complexity 1 30 0 2067 105 0 81 chr13 37158353 37158686 -64714483 + AluSx SINE Alu 1 306 -6 1025 209 35 11 chr13 37159204 37159487 -64713682 + MER33 DNA MER1_type 35 324 0 309 274 20 89 chr13 37159496 37159642 -64713527 + MIR3 SINE MIR 59 194 -14 3633 89 87 3 chr13 37160104 37160676 -64712493 + L1MC1 LINE L1 5705 6324 -9 406 346 96 30 chr13 37160981 37161433 -64711736 - L2 LINE L2 -7 3265 2779 183 318 47 9 chr13 37161501 37161608 -64711561 + L2 LINE L2 2871 2981 -291 204 299 104 0 chr13 37162463 37162540 -64710629 + L2 LINE L2 3150 3234 -38 33 0 0 0 chr13 37163591 37163624 -64709545 + AT_rich Low_complexity Low_complexity 1 33 0 385 232 101 7 chr13 37164527 37164665 -64708504 + L1ME4a LINE L1 5971 6121 0 2029 37 0 4 chr13 37164743 37164989 -64708180 - L1PA5 LINE L1 0 6154 5910 366 155 0 0 chr13 37164989 37165060 -64708109 + L1ME3A LINE L1 6095 6165 -5 21 0 0 0 chr13 37166132 37166153 -64707016 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 37167362 37167398 -64705771 + AT_rich Low_complexity Low_complexity 1 36 0 253 216 226 74 chr13 37167511 37167644 -64705525 + MIR SINE MIR 19 164 -67 1593 140 10 143 chr13 37167782 37168182 -64704987 - MER7A DNA MER2_type 0 346 2 24 32 0 0 chr13 37169233 37169264 -64703905 + AT_rich Low_complexity Low_complexity 1 31 0 1657 80 5 0 chr13 37170300 37170501 -64702668 - AluSg SINE Alu -108 202 1 21 36 0 0 chr13 37170617 37170645 -64702524 + AT_rich Low_complexity Low_complexity 1 28 0 401 358 46 14 chr13 37171016 37171234 -64701935 - MIR SINE MIR -6 256 32 2194 47 72 11 chr13 37172119 37172398 -64700771 + AluY SINE Alu 1 296 -15 2031 123 0 0 chr13 37172940 37173216 -64699953 + AluSx SINE Alu 1 276 -36 243 0 0 0 chr13 37173226 37173253 -64699916 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 545 302 102 53 chr13 37173462 37173638 -64699531 + L1M4 LINE L1 2676 2842 -3304 1736 179 3 13 chr13 37173638 37173945 -64699224 + AluJb SINE Alu 3 306 -6 545 302 102 53 chr13 37173945 37174198 -64698971 + L1M4 LINE L1 2842 3126 -3020 1994 146 0 52 chr13 37174588 37174972 -64698197 + AluJb SINE Alu 1 367 0 2158 122 20 0 chr13 37176131 37176426 -64696743 + AluSq SINE Alu 1 301 -12 449 293 49 8 chr13 37176793 37176916 -64696253 + L2 LINE L2 3185 3312 -1 1208 272 33 65 chr13 37177170 37177876 -64695293 + L1MC4 LINE L1 7268 7950 -92 22 70 0 0 chr13 37177945 37177988 -64695181 + AT_rich Low_complexity Low_complexity 1 43 0 640 178 8 17 chr13 37177999 37178117 -64695052 + AluJo SINE Alu 20 136 -176 249 280 251 5 chr13 37178341 37178548 -64694621 - MIR SINE MIR -2 260 3 485 278 111 57 chr13 37180833 37181275 -64691894 - L1ME4a LINE L1 -125 5996 5531 430 215 93 0 chr13 37181277 37181384 -64691785 - MIR SINE MIR -61 201 85 196 329 38 0 chr13 37181849 37181928 -64691241 + MER5A DNA MER1_type 108 189 0 2258 122 0 0 chr13 37182171 37182483 -64690686 - AluSx SINE Alu 0 312 1 206 382 36 27 chr13 37182520 37182630 -64690539 + L2 LINE L2 3154 3264 -8 364 222 196 39 chr13 37184015 37184168 -64689001 + MER5B DNA MER1_type 1 177 -1 854 220 86 10 chr13 37184664 37184873 -64688296 + MIR SINE MIR 32 256 -6 2181 157 34 23 chr13 37185431 37185908 -64687261 + L1MB2 LINE L1 5686 6167 -4 2948 199 7 53 chr13 37186877 37187561 -64685608 - MER82 DNA MER2_type 0 653 1 1717 175 11 0 chr13 37187627 37187913 -64685256 - AluJb SINE Alu -23 289 1 342 0 0 0 chr13 37188467 37188505 -64684664 + (TG)n Simple_repeat Simple_repeat 2 39 0 213 293 103 52 chr13 37190150 37190266 -64682903 - L2 LINE L2 -8 3305 3184 295 321 101 0 chr13 37191044 37191153 -64682016 - MIR3 SINE MIR -2 206 87 671 286 142 25 chr13 37191158 37191518 -64681651 + MLT1J1 LTR MaLR 45 446 0 1288 83 0 22 chr13 37191556 37191736 -64681433 + AluSg/x SINE Alu 129 304 -8 484 291 84 11 chr13 37191797 37191976 -64681193 + MIR SINE MIR 71 262 0 947 161 169 4 chr13 37192239 37192481 -64680688 + L1ME3A LINE L1 5839 6120 -50 1567 150 108 81 chr13 37192542 37192712 -64680457 + MSTB LTR MaLR 8 172 -254 2359 92 0 0 chr13 37192712 37193007 -64680162 + AluSc SINE Alu 1 295 -14 1567 150 108 81 chr13 37193007 37193243 -64679926 + MSTB LTR MaLR 172 425 -1 198 94 0 0 chr13 37193665 37193697 -64679472 - L2 LINE L2 -1 3312 3281 228 35 0 0 chr13 37194963 37194992 -64678177 + (CAGAA)n Simple_repeat Simple_repeat 4 32 0 2222 121 0 0 chr13 37197446 37197753 -64675416 + AluSx SINE Alu 1 307 -5 3795 106 72 13 chr13 37198008 37198623 -64674546 + MER39B LTR ERV1 3 653 0 201 171 0 0 chr13 37198807 37198842 -64674327 + A-rich Low_complexity Low_complexity 1 35 0 2262 145 23 16 chr13 37202220 37202607 -64670562 + MLT1B LTR MaLR 1 390 0 360 0 0 0 chr13 37202742 37202782 -64670387 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 151 38 0 chr13 37203638 37203691 -64669478 + GA-rich Low_complexity Low_complexity 3 57 0 199 217 22 0 chr13 37204475 37204521 -64668648 + L3 LINE CR1 1524 1570 -7 317 134 0 45 chr13 37205955 37206022 -64667147 + (CACCAT)n Simple_repeat Simple_repeat 5 68 0 1937 116 31 20 chr13 37207283 37207598 -64665571 - AluJb SINE Alu 0 312 1 2573 55 0 0 chr13 37208765 37209076 -64664093 + AluY SINE Alu 1 311 0 1217 46 7 0 chr13 37209081 37209274 -64663895 + AluY SINE Alu 127 320 0 778 167 14 0 chr13 37209278 37209453 -64663716 + FRAM SINE Alu 1 43 0 697 206 41 105 chr13 37209456 37209845 -64663324 - L1MC5 LINE L1 -903 7058 6695 2121 89 14 14 chr13 37210064 37210357 -64662812 - AluSq SINE Alu -20 293 1 183 80 0 0 chr13 37210990 37211015 -64662154 + (T)n Simple_repeat Simple_repeat 1 25 0 25 51 0 0 chr13 37211138 37211177 -64661992 + AT_rich Low_complexity Low_complexity 1 39 0 1118 173 0 0 chr13 37211893 37212066 -64661103 - AluJb SINE Alu -14 298 126 545 86 25 0 chr13 37212683 37212764 -64660405 - L1PA6 LINE L1 -270 5884 5802 3136 119 45 0 chr13 37213351 37213839 -64659330 + MER1A DNA MER1_type 20 529 0 578 229 41 41 chr13 37214235 37214479 -64658690 + L1MC4a LINE L1 5270 5513 -2295 351 247 181 0 chr13 37214497 37214604 -64658565 + L1MC4a LINE L1 5576 5662 -2146 2234 125 0 0 chr13 37214604 37214907 -64658262 - AluSx SINE Alu -9 303 1 351 247 181 0 chr13 37214907 37214965 -64658204 + L1MC4a LINE L1 5662 5771 -2037 360 225 17 58 chr13 37215089 37215209 -64657960 + L1MC4a LINE L1 5796 5910 -1898 21 57 0 0 chr13 37215216 37215251 -64657918 + AT_rich Low_complexity Low_complexity 1 35 0 300 307 113 20 chr13 37216043 37216193 -64656976 + MIR3 SINE MIR 33 196 -12 387 296 121 15 chr13 37218774 37218906 -64654263 - MER5B DNA MER1_type -3 175 30 590 260 34 17 chr13 37219240 37219417 -64653752 - MIR SINE MIR -70 192 13 352 241 195 79 chr13 37220886 37221127 -64652042 + L2 LINE L2 3041 3309 -4 927 234 18 32 chr13 37221277 37221495 -64651674 + MIR SINE MIR 38 252 -10 2558 271 117 9 chr13 37223822 37225163 -64648006 - L2 LINE L2 -6 3307 1823 1130 177 0 63 chr13 37225168 37225368 -64647801 + L1MB2 LINE L1 5931 6113 -58 2344 96 6 13 chr13 37225368 37225680 -64647489 + AluSx SINE Alu 1 310 -2 1130 177 0 63 chr13 37225680 37225733 -64647436 + L1MB2 LINE L1 6113 6168 -3 1355 85 6 0 chr13 37225912 37226088 -64647081 + AluY SINE Alu 126 302 -9 524 311 160 6 chr13 37226088 37226413 -64646756 - L2 LINE L2 -1733 1581 1207 266 345 115 40 chr13 37226732 37227106 -64646063 - L2 LINE L2 -2 3270 2869 296 311 85 81 chr13 37227118 37227378 -64645791 - L2 LINE L2 -657 2657 2399 2526 57 3 0 chr13 37227378 37227676 -64645493 + AluSg SINE Alu 1 299 -11 296 311 85 81 chr13 37227676 37227946 -64645223 - L2 LINE L2 -915 2399 2125 411 230 78 84 chr13 37229268 37229338 -64643831 - MIR SINE MIR -7 255 186 2142 138 0 3 chr13 37229338 37229636 -64643533 - AluSx SINE Alu -15 297 1 411 230 78 84 chr13 37229636 37229756 -64643413 - MIR SINE MIR -76 186 66 446 101 56 45 chr13 37229758 37229847 -64643322 + L1MB4 LINE L1 6091 6180 0 273 283 0 0 chr13 37229977 37230030 -64643139 - MIR SINE MIR -187 75 23 2333 131 14 17 chr13 37231849 37232281 -64640888 - HERVE LTR ERV1 -4182 3895 3249 3038 96 0 5 chr13 37232696 37233142 -64640027 - HERVE LTR ERV1 -3967 3846 3403 1642 100 4 12 chr13 37233136 37233395 -64639774 - HERVE LTR ERV1 -4308 3505 3249 * 348 229 99 164 chr13 37233465 37233788 -64639381 - L1M4b LINE L1 -6218 641 340 485 259 72 31 chr13 37233858 37234151 -64639018 + SATR1 Satellite Satellite 142 446 -24 297 241 170 9 chr13 37234234 37234346 -64638823 + SATR1 Satellite Satellite 197 326 -144 515 239 282 4 chr13 37234447 37234702 -64638467 + SATR1 Satellite Satellite 145 470 0 713 231 304 3 chr13 37234730 37235324 -64637845 + SATR1 Satellite Satellite 1 772 -1 497 229 266 5 chr13 37235406 37235620 -64637549 + SATR1 Satellite Satellite 198 467 -3 849 225 218 31 chr13 37235659 37236701 -64636468 + SATR1 Satellite Satellite 1 1236 -404 3465 59 0 2 chr13 37237375 37237813 -64635356 + L1PA5 LINE L1 5707 6143 -11 25 0 0 0 chr13 37237826 37237851 -64635318 + AT_rich Low_complexity Low_complexity 1 25 0 205 154 77 0 chr13 37238418 37238457 -64634712 + L2 LINE L2 3261 3302 -11 2356 173 47 29 chr13 37239176 37239445 -64633724 + Tigger3(Golem) DNA MER2_type 2466 2729 -300 261 0 0 0 chr13 37239445 37239474 -64633695 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2356 173 47 29 chr13 37239474 37239758 -64633411 + Tigger3(Golem) DNA MER2_type 2729 3029 0 253 331 79 7 chr13 37239931 37240070 -64633099 - MIR SINE MIR -18 244 96 3131 47 0 0 chr13 37240434 37240815 -64632354 + L1PA5 LINE L1 5773 6153 -1 226 176 54 40 chr13 37240905 37240979 -64632190 - Charlie8 DNA MER1_type -2253 164 90 186 315 158 31 chr13 37241037 37241164 -64632005 + L2 LINE L2 1833 1975 -1339 182 348 77 13 chr13 37241442 37241597 -64631572 + L2 LINE L2 3110 3274 -39 391 236 75 46 chr13 37241607 37241781 -64631388 + LTR41 LTR ERVL 3 181 -592 2463 56 3 0 chr13 37242053 37242356 -64630813 + AluY SINE Alu 1 304 -7 341 339 22 46 chr13 37242856 37243117 -64630052 + L1MC/D LINE L1 5194 5448 -716 347 295 171 46 chr13 37243191 37243472 -64629697 - LTR67 LTR ERVL -132 425 110 237 305 0 0 chr13 37243620 37243715 -64629454 + L1MC/D LINE L1 5679 5773 -2035 204 125 0 0 chr13 37243932 37243964 -64629205 + (TG)n Simple_repeat Simple_repeat 2 33 0 203 337 42 0 chr13 37244683 37244778 -64628391 - MIR SINE MIR -73 189 91 14287 138 26 53 chr13 37245218 37248021 -64625148 + Tigger4(Zombi) DNA MER2_type 2 2727 -4 283 296 61 9 chr13 37248615 37248730 -64624439 - MIR SINE MIR -76 186 66 308 315 45 0 chr13 37249550 37249639 -64623530 + L2 LINE L2 3205 3297 -16 207 186 0 0 chr13 37249657 37249700 -64623469 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 248 77 26 0 chr13 37249699 37249738 -64623431 + (GA)n Simple_repeat Simple_repeat 1 40 0 372 22 0 0 chr13 37250030 37250075 -64623094 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 177 48 0 chr13 37252179 37252241 -64620928 - MLT1A2 LTR MaLR -305 69 5 1016 180 4 79 chr13 37252244 37252511 -64620658 + L1ME1 LINE L1 5662 5908 -258 2374 101 143 11 chr13 37252511 37252889 -64620280 - MSTA LTR MaLR 0 428 1 707 252 34 64 chr13 37252889 37253155 -64620014 + L1ME1 LINE L1 5904 6161 -5 305 294 24 32 chr13 37253173 37253299 -64619870 + L2 LINE L2 1917 2041 -1273 2137 119 0 0 chr13 37253630 37253925 -64619244 + AluSx SINE Alu 1 295 -17 2173 123 0 3 chr13 37255898 37256200 -64616969 - AluSx SINE Alu -11 301 1 225 183 270 78 chr13 37256218 37256333 -64616836 - MIR SINE MIR -118 144 8 186 71 0 0 chr13 37256386 37256414 -64616755 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 291 231 94 43 chr13 37256585 37256702 -64616467 + MIR SINE MIR 23 145 -63 180 220 186 17 chr13 37257036 37257095 -64616074 - L2 LINE L2 -8 3264 3196 2093 124 0 0 chr13 37257996 37258304 -64614865 - AluSx SINE Alu 0 308 1 194 298 53 76 chr13 37258306 37258395 -64614774 - L2 LINE L2 -1 3271 3184 2292 113 3 3 chr13 37258395 37258705 -64614464 + AluSx SINE Alu 1 310 -2 194 298 53 76 chr13 37258705 37258746 -64614423 - L2 LINE L2 -88 3184 3144 221 198 208 28 chr13 37258887 37258993 -64614176 + MIR SINE MIR 20 144 -64 2384 122 53 10 chr13 37259084 37259477 -64613692 - L1MB3 LINE L1 -2 6181 5772 2219 161 34 6 chr13 37259655 37260010 -64613159 - MLT1A1 LTR MaLR 0 365 1 445 291 89 25 chr13 37260879 37261037 -64612132 + MIR SINE MIR 24 191 -71 420 192 216 0 chr13 37261169 37261294 -64611875 + MER4C LTR ERV1 314 465 0 2277 105 3 0 chr13 37261669 37261973 -64611196 + AluSg SINE Alu 1 305 -5 1832 161 0 20 chr13 37261982 37262281 -64610888 + AluSx SINE Alu 1 293 -19 2023 171 25 33 chr13 37262466 37262834 -64610335 + MLT1A1 LTR MaLR 1 365 0 2205 106 0 3 chr13 37262862 37263154 -64610015 + AluSg SINE Alu 2 292 -18 28 0 0 0 chr13 37263154 37263182 -64609987 + AT_rich Low_complexity Low_complexity 1 28 0 832 154 0 0 chr13 37264635 37264765 -64608404 - FLAM_A SINE Alu 0 142 13 2157 101 3 3 chr13 37264941 37265229 -64607940 - AluSq SINE Alu -25 288 1 235 241 0 0 chr13 37265582 37265636 -64607533 + MER112 DNA MER1_type 1 54 -206 333 0 0 0 chr13 37265661 37265698 -64607471 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 323 21 11 chr13 37267104 37267197 -64605972 + MIR SINE MIR 30 123 -85 507 272 80 46 chr13 37267437 37267676 -64605493 + MIR SINE MIR 16 262 0 1601 179 22 0 chr13 37267715 37267989 -64605180 + AluJb SINE Alu 1 280 -32 423 56 0 0 chr13 37267994 37268048 -64605121 + (CATA)n Simple_repeat Simple_repeat 2 55 0 1726 147 44 4 chr13 37268727 37268999 -64604170 - AluJo SINE Alu -29 283 1 1116 119 38 16 chr13 37269121 37269306 -64603863 + MER53 DNA DNA 1 189 0 275 127 0 18 chr13 37270550 37270605 -64602564 + (TCC)n Simple_repeat Simple_repeat 2 55 0 671 289 17 0 chr13 37270930 37271103 -64602066 - MIR3 SINE MIR -13 195 20 279 0 0 0 chr13 37271191 37271222 -64601947 + (TG)n Simple_repeat Simple_repeat 2 32 0 811 191 122 69 chr13 37271576 37271599 -64601570 - MER74B LTR ERVL -57 565 545 1908 140 14 0 chr13 37271599 37271908 -64601261 - AluSx SINE Alu 0 314 2 811 191 122 69 chr13 37271908 37272202 -64600967 - MER74B LTR ERVL -77 545 230 252 254 0 0 chr13 37272240 37272295 -64600874 - MER74B LTR ERVL -565 57 3 368 139 42 0 chr13 37272619 37272691 -64600478 + CT-rich Low_complexity Low_complexity 5 79 0 302 300 46 23 chr13 37274648 37274778 -64598391 - L2 LINE L2 -4 3268 3136 22 35 0 0 chr13 37274778 37274807 -64598362 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr13 37275443 37275483 -64597686 + AT_rich Low_complexity Low_complexity 1 40 0 1845 95 0 46 chr13 37275571 37275856 -64597313 - L1PB1 LINE L1 -204 5947 5676 305 266 46 0 chr13 37276466 37276575 -64596594 + Charlie5 DNA MER1_type 10 123 -2489 1204 183 110 27 chr13 37276590 37276918 -64596251 + Charlie5 DNA MER1_type 2268 2622 0 678 113 0 106 chr13 37277138 37277280 -64595889 + L1PA7 LINE L1 6028 6154 0 2319 84 7 0 chr13 37278149 37278446 -64594723 + AluSc SINE Alu 1 299 -10 528 209 29 0 chr13 37278627 37278732 -64594437 - MER5B DNA MER1_type -6 172 65 1167 223 55 0 chr13 37279043 37279317 -64593852 - L1MA9 LINE L1 -36 6276 5988 2595 149 21 14 chr13 37280151 37280574 -64592595 - MSTB LTR MaLR 0 426 1 1649 149 110 65 chr13 37281743 37282172 -64590997 - LTR7 LTR ERV1 -2 448 1 505 261 61 61 chr13 37282288 37282468 -64590701 + MIR3 SINE MIR 3 182 -26 318 327 77 0 chr13 37282911 37283015 -64590154 - L2 LINE L2 -1 3271 3160 1765 127 6 100 chr13 37283059 37283399 -64589770 - Tigger3(Golem) DNA MER2_type -1 3028 2721 257 274 123 0 chr13 37283397 37283470 -64589699 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 456 67 0 0 chr13 37284091 37284151 -64589018 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 2124 114 3 3 chr13 37284151 37284448 -64588721 - AluSx SINE Alu -15 297 1 186 118 0 0 chr13 37284770 37284804 -64588365 + (TTG)n Simple_repeat Simple_repeat 2 35 0 833 175 15 0 chr13 37285278 37285415 -64587754 + FRAM SINE Alu 22 160 -16 1347 45 0 0 chr13 37289353 37289508 -64583661 - L1PA5 LINE L1 0 6154 6000 1962 164 0 3 chr13 37289515 37289826 -64583343 - AluJo SINE Alu -2 310 1 269 214 36 0 chr13 37290902 37290956 -64582213 - MLT1H1 LTR MaLR -3 592 537 1713 128 28 92 chr13 37290956 37291276 -64581893 + MLT1A1 LTR MaLR 1 297 -68 1879 154 3 22 chr13 37291276 37291594 -64581575 - AluJb SINE Alu 0 312 1 1713 128 28 92 chr13 37291594 37291633 -64581536 + MLT1A1 LTR MaLR 297 337 -28 1535 157 119 72 chr13 37291920 37292348 -64580821 + LTR7 LTR ERV1 1 448 -2 188 316 95 63 chr13 37292674 37292769 -64580400 + MIR SINE MIR 1 98 -164 2063 106 0 65 chr13 37293999 37294321 -64578848 + AluSg SINE Alu 3 303 -7 411 21 0 0 chr13 37296139 37296187 -64576982 + (CA)n Simple_repeat Simple_repeat 2 49 0 232 376 35 14 chr13 37297128 37297269 -64575900 - MIR SINE MIR 0 262 119 2160 107 27 0 chr13 37297380 37297678 -64575491 + AluSq SINE Alu 1 306 -7 2086 104 27 20 chr13 37297769 37298066 -64575103 + AluSx SINE Alu 1 299 -13 2295 97 0 3 chr13 37298178 37298478 -64574691 + AluSq SINE Alu 1 299 -14 2238 205 67 71 chr13 37298927 37300199 -64572970 + L1MC4 LINE L1 4711 5397 -749 1981 130 56 0 chr13 37300432 37300717 -64572452 - AluSx SINE Alu -11 301 1 256 179 18 18 chr13 37301034 37301090 -64572079 + L1M4 LINE L1 4188 4243 -1903 503 229 133 60 chr13 37301163 37301431 -64571738 - MLT1H1 LTR MaLR -30 525 186 893 132 0 8 chr13 37301728 37301857 -64571312 + AluJb SINE Alu 26 153 -159 10173 42 9 0 chr13 37302792 37304725 -64568444 - L1PA5 LINE L1 -4 6150 4196 194 100 67 17 chr13 37305530 37305590 -64567579 + T-rich Low_complexity Low_complexity 6 68 0 2005 167 3 0 chr13 37305608 37305919 -64567250 - AluJb SINE Alu 0 312 1 296 243 39 48 chr13 37306015 37306118 -64567051 - MIR SINE MIR -119 143 42 264 77 51 0 chr13 37306135 37306174 -64566995 - MADE1 DNA Mariner -39 41 1 2305 145 58 24 chr13 37306489 37306903 -64566266 + MSTA LTR MaLR 1 428 0 203 198 185 0 chr13 37307067 37307148 -64566021 - MIR SINE MIR -69 193 98 233 254 58 29 chr13 37308588 37308726 -64564443 - Charlie7 DNA MER1_type -33 2579 2438 226 300 30 40 chr13 37308712 37308812 -64564357 - Charlie7 DNA MER1_type -2507 105 7 * 3567 188 10 7 chr13 37309238 37310355 -64562814 - L1MB8 LINE L1 -281 5897 4779 3533 23 2 18 chr13 37311438 37311835 -64561334 - SVA Other Other 0 1386 996 256 315 0 0 chr13 37311967 37312059 -64561110 + A-rich Low_complexity Low_complexity 1 92 0 233 172 0 40 chr13 37312094 37312193 -64560976 + A-rich Low_complexity Low_complexity 1 95 0 692 21 0 32 chr13 37312218 37312313 -64560856 + (A)n Simple_repeat Simple_repeat 1 92 0 690 80 0 36 chr13 37312313 37312450 -64560719 - SVA Other Other -635 751 620 826 124 0 0 chr13 37312462 37312575 -64560594 - AluJb SINE Alu -187 125 13 247 206 0 15 chr13 37313687 37313736 -64559433 + A-rich Low_complexity Low_complexity 4 53 -17 243 0 0 0 chr13 37313736 37313763 -64559406 + (CA)n Simple_repeat Simple_repeat 2 28 0 247 206 0 15 chr13 37313763 37313781 -64559388 + A-rich Low_complexity Low_complexity 53 70 0 2236 103 0 7 chr13 37314749 37315040 -64558129 + AluSg SINE Alu 1 289 -21 2202 110 16 7 chr13 37315395 37315704 -64557465 + AluSx SINE Alu 1 312 0 386 275 259 0 chr13 37315706 37315837 -64557332 - MER5A DNA MER1_type -16 173 9 382 312 163 21 chr13 37316020 37316449 -64556720 - LTR33 LTR ERVL -4 517 28 467 139 0 0 chr13 37317427 37317506 -64555663 - L1MB4 LINE L1 -5 6175 6097 22 0 0 0 chr13 37317513 37317535 -64555634 + AT_rich Low_complexity Low_complexity 1 22 0 2321 100 6 3 chr13 37317613 37317924 -64555245 - AluSq SINE Alu -1 312 1 514 197 58 122 chr13 37318266 37318454 -64554715 + MIR SINE MIR 17 192 -70 594 247 89 49 chr13 37318457 37318745 -64554424 - MLT1J2 LTR MaLR -3 447 102 207 0 0 0 chr13 37318762 37318785 -64554384 + (A)n Simple_repeat Simple_repeat 1 23 0 456 242 100 0 chr13 37318785 37318905 -64554264 - LTR33 LTR ERVL -17 504 373 257 339 136 17 chr13 37318946 37319123 -64554046 - LTR33 LTR ERVL -321 200 3 231 250 0 0 chr13 37319126 37319178 -64553991 + MIR SINE MIR 199 250 -12 333 273 103 48 chr13 37319629 37319794 -64553375 - L3 LINE CR1 0 1577 1404 * 347 324 67 31 chr13 37319788 37320013 -64553156 - MIR SINE MIR -22 240 8 192 306 74 28 chr13 37320198 37320269 -64552900 - MIR SINE MIR -70 192 113 1913 181 0 6 chr13 37320269 37320583 -64552586 + AluJb SINE Alu 1 312 0 192 306 74 28 chr13 37320583 37320619 -64552550 - MIR SINE MIR -149 113 80 235 344 42 21 chr13 37320625 37320721 -64552448 - MIR3 SINE MIR -107 101 4 195 42 0 0 chr13 37321544 37321568 -64551601 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1123 168 5 55 chr13 37321573 37321793 -64551376 - AluJb SINE Alu -23 289 81 2448 140 8 3 chr13 37321923 37322287 -64550882 + MER47A DNA MER2_type 1 366 0 232 290 43 0 chr13 37322466 37322535 -64550634 - MIR SINE MIR -31 231 160 277 311 172 8 chr13 37323149 37323271 -64549898 + L2 LINE L2 3129 3270 -2 207 299 37 19 chr13 37324107 37324214 -64548955 + MIR SINE MIR 100 208 -54 1054 186 21 0 chr13 37324317 37324510 -64548659 - MER44D DNA MER2_type -2 603 407 22 35 0 0 chr13 37324849 37324878 -64548291 + AT_rich Low_complexity Low_complexity 1 29 0 1263 95 0 0 chr13 37325223 37325381 -64547788 - AluSq SINE Alu -155 158 1 3182 199 10 47 chr13 37325385 37325723 -64547446 + MER82 DNA MER2_type 1 303 -350 2317 98 0 0 chr13 37325723 37326018 -64547151 + AluSq SINE Alu 1 295 -18 3182 199 10 47 chr13 37326018 37326357 -64546812 + MER82 DNA MER2_type 303 653 0 284 272 12 0 chr13 37329217 37329298 -64543871 + MIR SINE MIR 32 113 -149 237 132 0 0 chr13 37330076 37330114 -64543055 + (A)n Simple_repeat Simple_repeat 1 38 0 187 250 54 0 chr13 37330776 37330832 -64542337 - MIR SINE MIR -63 145 87 1084 179 0 0 chr13 37332683 37332862 -64540307 - FRAM SINE Alu 0 176 1 671 236 54 106 chr13 37333282 37333479 -64539690 + L1MC4 LINE L1 7292 7498 -544 2132 138 0 0 chr13 37333479 37333784 -64539385 + AluSq SINE Alu 3 307 -6 671 236 54 106 chr13 37333784 37334049 -64539120 + L1MC4 LINE L1 7498 7826 -216 1692 168 36 7 chr13 37334049 37334329 -64538840 + AluJo SINE Alu 1 288 -24 671 236 54 106 chr13 37334329 37334418 -64538751 + L1MC4 LINE L1 7826 7918 -124 2285 98 0 10 chr13 37334475 37334781 -64538388 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr13 37335142 37335163 -64538006 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 37335366 37335389 -64537780 + AT_rich Low_complexity Low_complexity 1 23 0 1978 139 0 10 chr13 37336659 37336962 -64536207 + AluJb SINE Alu 1 300 -12 2211 67 84 0 chr13 37337798 37338082 -64535087 - AluY SINE Alu -3 308 1 583 224 164 7 chr13 37338921 37339073 -64534096 - MER5A DNA MER1_type -9 180 5 1225 117 0 0 chr13 37339450 37339621 -64533548 + AluSg/x SINE Alu 132 302 -8 1627 167 0 55 chr13 37340577 37340888 -64532281 + AluJb SINE Alu 1 294 -18 198 0 0 0 chr13 37340985 37341007 -64532162 + (A)n Simple_repeat Simple_repeat 1 22 0 2015 116 0 0 chr13 37341198 37341474 -64531695 - AluSx SINE Alu 0 312 37 554 306 77 24 chr13 37341664 37341912 -64531257 + MIR SINE MIR 2 262 0 1256 212 109 9 chr13 37345802 37345977 -64527192 + MLT1E1 LTR MaLR 57 213 -441 2208 113 3 13 chr13 37345977 37346288 -64526881 + AluSq SINE Alu 1 308 -5 1256 212 109 9 chr13 37346288 37346600 -64526569 + MLT1E1 LTR MaLR 213 654 0 315 0 0 0 chr13 37347829 37347864 -64525305 + (CA)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr13 37348528 37348552 -64524617 + (A)n Simple_repeat Simple_repeat 1 24 0 4500 79 32 48 chr13 37349027 37349230 -64523939 - L1MA2 LINE L1 0 6304 6099 1922 98 83 18 chr13 37349230 37349507 -64523662 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr13 37349507 37349529 -64523640 + (TA)n Simple_repeat Simple_repeat 2 23 0 4500 79 32 48 chr13 37349529 37350005 -64523164 - L1MA2 LINE L1 -203 6101 5635 313 256 56 81 chr13 37350090 37350250 -64522919 - L2 LINE L2 0 3313 3158 778 261 81 0 chr13 37350263 37350474 -64522695 - MIR SINE MIR -1 261 34 312 120 0 0 chr13 37351443 37351493 -64521676 + (TC)n Simple_repeat Simple_repeat 1 50 0 509 301 40 6 chr13 37351535 37351708 -64521461 - MIR SINE MIR -74 188 10 182 350 80 0 chr13 37352846 37352946 -64520223 + MIR SINE MIR 22 129 -133 491 304 54 6 chr13 37353137 37353305 -64519864 + MIR SINE MIR 55 230 -32 246 279 140 39 chr13 37353954 37354133 -64519036 + MIR SINE MIR 56 252 -10 569 222 99 47 chr13 37354495 37354700 -64518469 - L1MB8 LINE L1 -1 6177 5955 409 215 112 0 chr13 37355037 37355144 -64518025 + MER94 DNA DNA 1 119 -15 315 0 0 0 chr13 37355847 37355882 -64517287 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 263 139 44 chr13 37356738 37356875 -64516294 + MIR SINE MIR 43 192 -70 396 59 0 0 chr13 37357511 37357562 -64515607 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2068 125 7 0 chr13 37357565 37357845 -64515324 - AluSx SINE Alu -30 282 1 195 333 132 0 chr13 37357888 37358002 -64515167 + MIR3 SINE MIR 15 143 -65 565 199 232 0 chr13 37358215 37358396 -64514773 - MIR SINE MIR -33 229 7 216 294 77 47 chr13 37358497 37358667 -64514502 - MIR SINE MIR -23 239 65 347 217 16 78 chr13 37359489 37359618 -64513551 + MIR3 SINE MIR 48 168 -40 242 308 15 0 chr13 37359756 37359821 -64513348 + MIR SINE MIR 197 262 0 701 261 17 11 chr13 37359834 37360014 -64513155 - MIR SINE MIR -79 183 3 1905 169 17 50 chr13 37360726 37361128 -64512041 + MLT1B LTR MaLR 2 390 0 21 0 0 0 chr13 37364167 37364188 -64508981 + AT_rich Low_complexity Low_complexity 1 21 0 1798 155 11 0 chr13 37364620 37364923 -64508246 - AluSx SINE Alu 0 306 1 1614 142 44 22 chr13 37365313 37365480 -64507689 - AluJb SINE Alu 0 309 132 2033 119 0 52 chr13 37365480 37365816 -64507353 - AluSx SINE Alu 0 312 1 1614 142 44 22 chr13 37365816 37365951 -64507218 - AluJb SINE Alu -177 132 1 439 203 81 47 chr13 37366405 37366553 -64506616 + L2 LINE L2 3158 3310 -3 358 297 36 14 chr13 37366619 37366757 -64506412 + MIR SINE MIR 8 148 -114 22 0 0 0 chr13 37369843 37369865 -64503304 + GC_rich Low_complexity Low_complexity 1 22 0 225 65 0 0 chr13 37369872 37369903 -64503266 + (TGG)n Simple_repeat Simple_repeat 3 33 0 21 36 0 0 chr13 37369985 37370013 -64503156 + GC_rich Low_complexity Low_complexity 1 28 0 188 299 182 32 chr13 37370693 37370880 -64502289 - MIR SINE MIR -18 244 30 182 274 62 82 chr13 37372187 37372333 -64500836 + L2 LINE L2 3170 3312 -1 21 36 0 0 chr13 37372884 37372912 -64500257 + AT_rich Low_complexity Low_complexity 1 28 0 1564 114 152 73 chr13 37373202 37373491 -64499678 - AluSq SINE Alu -1 312 1 189 0 0 0 chr13 37373493 37373514 -64499655 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2024 128 4 0 chr13 37373514 37373795 -64499374 - AluSx SINE Alu -30 282 1 1836 86 14 50 chr13 37374423 37374512 -64498657 + L1PB1 LINE L1 5881 5972 -179 2150 122 3 0 chr13 37374512 37374806 -64498363 + AluSx SINE Alu 1 295 -17 1836 86 14 50 chr13 37374806 37374995 -64498174 + L1PB1 LINE L1 5972 6149 -2 2414 71 0 7 chr13 37375194 37375490 -64497679 + AluSc SINE Alu 1 294 -15 1914 164 32 18 chr13 37375708 37376050 -64497119 - MER7A DNA MER2_type -1 345 1 441 237 20 33 chr13 37376160 37376312 -64496857 + MER103 DNA DNA 10 159 -7 25 75 0 0 chr13 37377466 37377519 -64495650 + AT_rich Low_complexity Low_complexity 1 53 0 297 360 29 7 chr13 37378744 37378883 -64494286 - MIR3 SINE MIR -48 160 19 21 0 0 0 chr13 37380740 37380761 -64492408 + AT_rich Low_complexity Low_complexity 1 21 0 417 352 11 11 chr13 37381220 37381402 -64491767 + MIR3 SINE MIR 20 201 -7 1977 123 42 0 chr13 37382028 37382312 -64490857 - AluSx SINE Alu -12 300 5 1345 174 56 62 chr13 37382363 37382425 -64490744 - LTR37A LTR ERV1 0 426 365 2210 128 0 0 chr13 37382425 37382730 -64490439 + AluSx SINE Alu 1 305 -7 1345 174 56 62 chr13 37382730 37383057 -64490112 - LTR37A LTR ERV1 -61 365 39 2637 47 0 0 chr13 37383233 37383530 -64489639 - AluSq SINE Alu -16 297 1 1681 185 15 36 chr13 37383530 37383865 -64489304 - MER82 DNA MER2_type -321 332 5 1275 95 0 0 chr13 37383872 37384030 -64489139 + AluSq SINE Alu 1 158 -155 1610 38 0 0 chr13 37384372 37384634 -64488535 + (G)n Simple_repeat Simple_repeat 1 262 0 832 171 0 27 chr13 37384638 37384784 -64488385 - MER44D DNA MER2_type -197 412 1 2148 116 0 49 chr13 37385114 37385441 -64487728 + AluSx SINE Alu 1 311 -1 804 232 57 38 chr13 37385822 37386085 -64487084 - LTR40b LTR ERVL -2 460 193 321 300 18 71 chr13 37386415 37386585 -64486584 + MLT1K LTR MaLR 347 507 -81 2092 173 19 102 chr13 37386644 37387210 -64485959 - MLT2B1 LTR ERVL -1 519 1 437 0 0 19 chr13 37387554 37387608 -64485561 + (GA)n Simple_repeat Simple_repeat 1 53 0 1987 106 3 78 chr13 37389068 37389389 -64483780 - AluSq SINE Alu -16 297 1 287 278 0 19 chr13 37389482 37389590 -64483579 + (TA)n Simple_repeat Simple_repeat 2 107 0 484 260 110 59 chr13 37389604 37389877 -64483292 - L1MC4 LINE L1 -143 7899 7613 2349 100 3 3 chr13 37389887 37390196 -64482973 - AluSq SINE Alu -4 309 1 39 22 0 0 chr13 37390255 37390301 -64482868 + AT_rich Low_complexity Low_complexity 1 46 0 231 277 24 24 chr13 37390537 37390620 -64482549 - L1MC4 LINE L1 -678 7364 7282 1969 149 0 19 chr13 37391038 37391353 -64481816 + AluJb SINE Alu 1 309 -3 2594 93 36 3 chr13 37393409 37393795 -64479374 - MER39B LTR ERV1 0 653 255 527 73 0 12 chr13 37393795 37393877 -64479292 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 267 93 0 0 chr13 37394013 37394056 -64479113 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 25 31 0 0 chr13 37394157 37394189 -64478980 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr13 37394475 37394504 -64478665 + AT_rich Low_complexity Low_complexity 1 29 0 3867 141 42 20 chr13 37394821 37395507 -64477662 - L1MB2 LINE L1 0 6171 5471 215 169 51 51 chr13 37395737 37395796 -64477373 + L2 LINE L2 3255 3313 0 23 0 0 0 chr13 37395954 37395977 -64477192 + AT_rich Low_complexity Low_complexity 1 23 0 1085 125 0 0 chr13 37396016 37396160 -64477009 - AluSq/x SINE Alu -168 144 1 374 261 141 0 chr13 37396176 37396318 -64476851 + MIR SINE MIR 101 262 0 3241 136 40 0 chr13 37396464 37396970 -64476199 + L1MC2 LINE L1 5531 6056 -288 408 121 0 0 chr13 37397605 37397663 -64475506 - AluS SINE Alu -252 59 2 332 250 42 10 chr13 37397763 37397859 -64475310 + MER5B DNA MER1_type 7 105 -73 1462 125 36 20 chr13 37398174 37398422 -64474747 - L1MA5A LINE L1 0 6297 6046 2177 245 55 33 chr13 37398439 37399218 -64473951 + L1M3f LINE L1 560 1342 -4136 1724 127 109 8 chr13 37399218 37399485 -64473684 - AluSx SINE Alu -18 294 1 2177 245 55 33 chr13 37399485 37399527 -64473642 + L1M3f LINE L1 1342 1382 -4096 1028 157 27 11 chr13 37399534 37399719 -64473450 + L1 LINE L1 4828 5015 -1131 3784 174 25 117 chr13 37399740 37400709 -64472460 - MER21A LTR ERV1 -28 903 24 306 67 0 0 chr13 37400710 37400755 -64472414 + (CA)n Simple_repeat Simple_repeat 2 46 0 879 219 0 0 chr13 37400954 37401100 -64472069 - AluJb SINE Alu -27 285 140 508 135 9 72 chr13 37401101 37401212 -64471957 + L1MA4 LINE L1 6186 6289 -11 379 223 140 78 chr13 37402301 37402494 -64470675 - MER63A DNA MER1_type -5 205 1 2831 85 3 0 chr13 37402577 37402940 -64470229 - THE1B LTR MaLR 0 364 1 374 237 81 116 chr13 37404071 37404244 -64468925 + L2 LINE L2 3112 3278 -35 435 180 112 48 chr13 37405018 37405167 -64468002 - MSTD LTR MaLR 0 396 204 180 189 0 0 chr13 37405167 37405204 -64467965 - MIR SINE MIR -220 42 6 501 156 148 16 chr13 37405320 37405448 -64467721 - MSTD LTR MaLR -215 150 6 272 189 8 118 chr13 37405460 37405499 -64467670 - L1ME3A LINE L1 -95 6075 6033 3477 104 67 43 chr13 37405499 37405528 -64467641 + LTR9 LTR ERV1 1 28 -584 2390 57 0 13 chr13 37405528 37405829 -64467340 + AluY SINE Alu 1 297 -14 3477 104 67 43 chr13 37405829 37406397 -64466772 + LTR9 LTR ERV1 28 612 0 272 189 8 118 chr13 37406397 37406484 -64466685 - L1ME3A LINE L1 -137 6033 5963 301 180 45 108 chr13 37406511 37406622 -64466547 - L1ME3A LINE L1 -202 5982 5879 2209 104 3 0 chr13 37406944 37407231 -64465938 + AluSp SINE Alu 1 288 -25 838 154 0 0 chr13 37407407 37407537 -64465632 + FLAM_A SINE Alu 13 142 0 24 0 0 0 chr13 37408990 37409014 -64464155 + AT_rich Low_complexity Low_complexity 1 24 0 2215 108 0 3 chr13 37409014 37409310 -64463859 - AluSg SINE Alu -14 296 2 1855 171 25 33 chr13 37409338 37409706 -64463463 - MLT1A1 LTR MaLR 0 365 1 1841 161 0 20 chr13 37409891 37410190 -64462979 - AluSx SINE Alu -19 293 1 2275 105 3 0 chr13 37410199 37410503 -64462666 - AluSg SINE Alu -5 305 1 667 155 172 17 chr13 37410878 37411052 -64462117 - MER4C LTR ERV1 0 465 265 2358 63 29 149 chr13 37411062 37411410 -64461759 - MER4A LTR ERV1 -244 420 32 2195 122 0 0 chr13 37411410 37411713 -64461456 + AluSq SINE Alu 1 303 -10 2105 120 0 3 chr13 37411719 37412047 -64461122 + AluSx SINE Alu 1 327 0 2358 63 29 149 chr13 37412047 37412167 -64461002 - MER4A LTR ERV1 -637 27 1 439 265 85 27 chr13 37412376 37412636 -64460533 + L1ME4a LINE L1 5764 6038 -83 2267 111 3 13 chr13 37412934 37413241 -64459928 - AluSx SINE Alu -8 304 1 2254 91 0 0 chr13 37413254 37413540 -64459629 - AluY SINE Alu -5 306 21 2016 69 0 23 chr13 37413577 37413839 -64459330 - AluY SINE Alu -55 256 1 850 143 0 0 chr13 37413942 37414075 -64459094 - FLAM_C SINE Alu 0 133 1 263 240 27 0 chr13 37414091 37414166 -64459003 + L1MEc LINE L1 1801 1877 -4519 220 336 25 34 chr13 37414188 37414307 -64458862 - MIR SINE MIR -64 198 81 619 130 37 0 chr13 37414838 37414946 -64458223 + L1MA5A LINE L1 6182 6293 -4 33 35 0 17 chr13 37414965 37415009 -64458160 + AT_rich Low_complexity Low_complexity 1 45 -12 831 163 0 0 chr13 37415009 37415132 -64458037 - FLAM_C SINE Alu -10 123 1 33 35 0 17 chr13 37415132 37415145 -64458024 + AT_rich Low_complexity Low_complexity 45 57 0 281 79 0 0 chr13 37415378 37415416 -64457753 + Alu SINE Alu 1 38 -263 3893 100 7 8 chr13 37415483 37416082 -64457087 - HERVE LTR ERV1 -3967 3846 3249 3925 102 3 8 chr13 37416545 37417146 -64456023 - HERVE LTR ERV1 -3967 3846 3249 2799 108 0 7 chr13 37417224 37417659 -64455510 - HERVE LTR ERV1 -3979 3834 3403 1613 108 4 12 chr13 37417653 37417912 -64455257 - HERVE LTR ERV1 -4308 3505 3249 * 2994 99 0 5 chr13 37418381 37418827 -64454342 - HERVE LTR ERV1 -3967 3846 3403 1642 100 4 12 chr13 37418821 37419080 -64454089 - HERVE LTR ERV1 -4308 3505 3249 * 381 292 67 120 chr13 37419213 37419679 -64453490 - L1M4b LINE L1 -6122 737 297 476 263 72 31 chr13 37419700 37419993 -64453176 + SATR1 Satellite Satellite 142 446 -24 * 502 267 216 25 chr13 37419778 37420415 -64452754 + SATR1 Satellite Satellite 1 758 -4 330 26 0 0 chr13 37422252 37422291 -64450878 + (CA)n Simple_repeat Simple_repeat 2 40 0 219 103 0 0 chr13 37422451 37422490 -64450679 + (GA)n Simple_repeat Simple_repeat 2 40 0 309 296 56 5 chr13 37422493 37422689 -64450480 - L1M4 LINE L1 -1296 4850 4645 21 0 0 0 chr13 37423088 37423109 -64450060 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 37423556 37423598 -64449571 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr13 37424939 37424961 -64448208 + AT_rich Low_complexity Low_complexity 1 22 0 972 216 19 130 chr13 37425533 37425895 -64447274 + MER52A LTR ERV1 650 971 -784 873 293 3 24 chr13 37425863 37426157 -64447012 + LTR28 LTR ERV1 437 724 -296 * 232 216 0 126 chr13 37426203 37426314 -64446855 + MER52A LTR ERV1 1363 1459 -296 237 323 8 23 chr13 37426341 37426474 -64446695 + MER52A LTR ERV1 1608 1738 -17 230 269 234 0 chr13 37427483 37427628 -64445541 - MIR SINE MIR -1 261 83 389 354 19 19 chr13 37428160 37428369 -64444800 - L2 LINE L2 -1068 2246 2038 1982 321 132 39 chr13 37429973 37431395 -64441774 - L2 LINE L2 -1269 2045 492 25 0 0 0 chr13 37431948 37431973 -64441196 + AT_rich Low_complexity Low_complexity 1 25 0 403 328 8 0 chr13 37432379 37432498 -64440671 + L2 LINE L2 3153 3272 0 577 247 29 6 chr13 37434182 37434356 -64438813 + MER5B DNA MER1_type 1 178 0 281 219 14 0 chr13 37434689 37434762 -64438407 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 27 29 0 0 chr13 37435595 37435629 -64437540 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 37435999 37436020 -64437149 + AT_rich Low_complexity Low_complexity 1 21 0 2336 211 33 22 chr13 37437518 37438517 -64434652 + L1MC1 LINE L1 4810 5917 -416 743 189 85 0 chr13 37438535 37438699 -64434470 + L1MC1 LINE L1 6083 6260 -73 1964 191 76 56 chr13 37438701 37438792 -64434377 - MER44D DNA MER2_type -1882 605 517 2326 142 37 28 chr13 37438792 37439221 -64433948 - Tigger2a DNA MER2_type -1 433 1 1964 191 76 56 chr13 37439221 37439315 -64433854 - MER44D DNA MER2_type -1970 517 426 1890 127 46 62 chr13 37439315 37439357 -64433812 - THE1B LTR MaLR 0 364 323 2284 99 3 0 chr13 37439357 37439659 -64433510 + AluSq SINE Alu 1 303 -10 1890 127 46 62 chr13 37439659 37439986 -64433183 - THE1B LTR MaLR -41 323 1 1964 191 76 56 chr13 37439986 37440338 -64432831 - MER44D DNA MER2_type -2061 426 1 260 149 60 45 chr13 37440342 37440409 -64432760 + L1MC1 LINE L1 6265 6332 -1 218 382 32 0 chr13 37440560 37440683 -64432486 - L2 LINE L2 -276 3037 2911 296 263 59 17 chr13 37441472 37441590 -64431579 + HAL1 LINE L1 1519 1641 -866 525 302 91 32 chr13 37442072 37442484 -64430685 + L1MEc LINE L1 2158 2564 -3651 339 365 35 10 chr13 37442485 37442688 -64430481 - LTR52-int LTR ERVL -543 3013 2806 4287 278 79 65 chr13 37442700 37442928 -64430241 - LTR52-int LTR ERVL -1113 2443 2220 234 0 0 0 chr13 37442928 37442954 -64430215 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4287 278 79 65 chr13 37442954 37445134 -64428035 - LTR52-int LTR ERVL -1336 2220 1 440 228 48 68 chr13 37445246 37445452 -64427717 - LTR52 LTR ERVL -205 216 15 273 169 156 0 chr13 37445503 37445580 -64427589 + L1MA9 LINE L1 6217 6305 -7 2371 100 7 0 chr13 37445751 37446060 -64427109 - AluSx SINE Alu 0 312 2 1205 201 106 19 chr13 37446183 37446542 -64426627 + MLT1B LTR MaLR 1 390 0 233 164 284 0 chr13 37446555 37446622 -64426547 - MLT1H LTR MaLR -43 506 421 315 359 24 14 chr13 37447271 37447480 -64425689 - MLT1I LTR MaLR -3 406 196 317 399 45 30 chr13 37447977 37448245 -64424924 - L2 LINE L2 -4 3268 2997 21 0 0 0 chr13 37448864 37448885 -64424284 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 37448993 37449022 -64424147 + AT_rich Low_complexity Low_complexity 1 29 0 1564 112 0 0 chr13 37450585 37450826 -64422343 - L1MA3 LINE L1 -1 6304 6064 214 211 66 13 chr13 37450826 37450902 -64422267 + (TTTAA)n Simple_repeat Simple_repeat 4 83 0 21577 170 10 10 chr13 37450906 37451394 -64421775 - L1PA11 LINE L1 0 6174 5688 2485 84 0 0 chr13 37451394 37451702 -64421467 + AluY SINE Alu 1 308 -3 21577 170 10 10 chr13 37451702 37456126 -64417043 - L1PA11 LINE L1 -486 5688 1261 592 175 29 0 chr13 37456126 37456229 -64416940 - U6 snRNA snRNA 0 107 2 879 259 92 45 chr13 37456573 37457087 -64416082 - L1ME1 LINE L1 -3 6163 5630 12851 113 8 38 chr13 37457129 37459536 -64413633 + L1P3 LINE L1 1 2390 -4071 1039 241 36 53 chr13 37459645 37459881 -64413288 - L1ME1 LINE L1 -1009 5137 4907 2432 63 23 0 chr13 37459881 37460183 -64412986 - AluY SINE Alu -2 309 1 1039 241 36 53 chr13 37460183 37460303 -64412866 - L1ME1 LINE L1 -1239 4907 4787 1290 198 145 26 chr13 37460714 37461120 -64412049 - MER66B LTR ERV1 0 486 97 565 163 0 0 chr13 37461265 37461351 -64411818 - AluJ/FRAM SINE Alu -8 304 219 407 160 25 25 chr13 37461760 37461879 -64411290 + CT-rich Low_complexity Low_complexity 3 121 0 206 281 0 16 chr13 37462462 37462526 -64410643 - L2 LINE L2 -1 3312 3250 2157 107 37 0 chr13 37462723 37463022 -64410147 + AluSx SINE Alu 1 310 -2 267 83 0 21 chr13 37463797 37463845 -64409324 - L1MB4 LINE L1 -4 6176 6130 217 284 0 102 chr13 37463890 37464017 -64409152 + L2 LINE L2 7 120 -3194 240 162 0 0 chr13 37464031 37464068 -64409101 - MER63 DNA MER1_type -893 37 1 308 179 9 38 chr13 37464131 37464237 -64408932 + CT-rich Low_complexity Low_complexity 2 104 0 272 294 54 11 chr13 37464273 37464365 -64408804 - MIR SINE MIR -16 246 151 1725 190 0 13 chr13 37464390 37464700 -64408469 - AluJo SINE Alu -4 308 3 293 219 0 61 chr13 37464722 37464746 -64408423 - MIR SINE MIR -1 261 237 3048 126 108 24 chr13 37464746 37465295 -64407874 - LTR49 LTR ERV1 0 595 1 293 219 0 61 chr13 37465295 37465352 -64407817 - MIR SINE MIR -25 237 185 216 0 0 0 chr13 37465364 37465388 -64407781 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr13 37465496 37465517 -64407652 + AT_rich Low_complexity Low_complexity 1 21 0 2131 116 24 3 chr13 37465670 37465963 -64407206 - AluSx SINE Alu -13 299 1 341 305 199 0 chr13 37466267 37466418 -64406751 + MER5A DNA MER1_type 9 189 0 196 304 51 13 chr13 37466474 37466553 -64406616 + L2 LINE L2 2715 2796 -518 2183 99 0 0 chr13 37466716 37466988 -64406181 + AluSg SINE Alu 1 272 -38 769 185 0 0 chr13 37467290 37467425 -64405744 - FLAM_C SINE Alu -2 141 7 2144 117 0 3 chr13 37467506 37467797 -64405372 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr13 37468541 37468564 -64404605 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr13 37468564 37468591 -64404578 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1786 142 35 35 chr13 37468613 37468803 -64404366 - AluJo SINE Alu -1 311 119 231 36 0 0 chr13 37468803 37468831 -64404338 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1786 142 35 35 chr13 37468831 37468951 -64404218 - AluJo SINE Alu -192 120 1 1950 138 9 52 chr13 37468983 37469308 -64403861 + AluSx SINE Alu 2 312 0 301 56 0 0 chr13 37469467 37469503 -64403666 - MLT2B1 LTR ERVL -8 507 472 296 200 13 0 chr13 37469538 37469613 -64403556 + (TA)n Simple_repeat Simple_repeat 1 76 0 230 203 127 0 chr13 37469626 37469705 -64403464 + L1MC4 LINE L1 6617 6705 -1337 2220 112 3 0 chr13 37469740 37470045 -64403124 - AluSx SINE Alu -3 309 4 1611 140 186 69 chr13 37470056 37470464 -64402705 - MLT2B1 LTR ERVL -63 457 2 189 173 19 39 chr13 37470581 37470633 -64402536 - L2 LINE L2 0 3313 3263 1627 185 46 80 chr13 37470761 37470824 -64402345 - MLT1D LTR MaLR -2 503 439 2208 119 3 0 chr13 37470824 37471126 -64402043 + AluSx SINE Alu 1 303 -9 1627 185 46 80 chr13 37471126 37471490 -64401679 - MLT1D LTR MaLR -66 439 117 40 37 0 0 chr13 37471491 37471545 -64401624 + AT_rich Low_complexity Low_complexity 1 54 0 1041 128 0 0 chr13 37471560 37471701 -64401468 - AluJb SINE Alu -171 141 1 424 224 47 47 chr13 37471708 37471815 -64401354 - MLT1D LTR MaLR -398 107 1 1305 114 0 0 chr13 37472010 37472185 -64400984 - AluSq SINE Alu -8 305 131 1763 77 0 46 chr13 37472234 37472349 -64400820 - L1PA8 LINE L1 -1 6171 6052 188 35 35 0 chr13 37472349 37472378 -64400791 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2283 96 0 0 chr13 37472378 37472660 -64400509 - AluSg1 SINE Alu -27 282 1 1763 77 0 46 chr13 37472660 37472802 -64400367 - L1PA8 LINE L1 -118 6054 5925 1980 37 0 8 chr13 37472804 37473046 -64400123 + L1PA8 LINE L1 5690 5929 -243 477 110 0 0 chr13 37474952 37475025 -64398144 + (TC)n Simple_repeat Simple_repeat 2 74 0 4904 110 49 15 chr13 37475057 37475810 -64397359 - MER4E LTR ERV1 0 779 1 2561 56 7 3 chr13 37475992 37476297 -64396872 - AluSq SINE Alu -6 307 2 1886 149 7 16 chr13 37476319 37476627 -64396542 + AluJb SINE Alu 1 305 -7 2305 118 0 6 chr13 37476627 37476941 -64396228 + AluSx SINE Alu 1 312 0 238 115 39 0 chr13 37477056 37477108 -64396061 + (TA)n Simple_repeat Simple_repeat 1 54 0 1427 179 33 0 chr13 37477126 37477399 -64395770 - L1MB4 LINE L1 -7 6173 5892 441 332 86 17 chr13 37478538 37478770 -64394399 + MIR SINE MIR 7 254 -8 207 139 0 0 chr13 37479280 37479316 -64393853 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 722 75 5 101 chr13 37479327 37479526 -64393643 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 394 162 10 10 chr13 37479536 37479635 -64393534 + CT-rich Low_complexity Low_complexity 2 100 0 2116 93 40 13 chr13 37479638 37479939 -64393230 - AluSx SINE Alu -3 309 1 206 300 27 64 chr13 37481534 37481644 -64391525 + MIR SINE MIR 30 135 -73 214 143 24 24 chr13 37482758 37482800 -64390369 - MIR SINE MIR -149 113 72 184 259 17 17 chr13 37484343 37484401 -64388768 + MIR SINE MIR 201 258 -4 390 226 165 12 chr13 37484690 37484854 -64388315 - L1MC5 LINE L1 -36 7925 7737 2223 92 7 14 chr13 37485030 37485324 -64387845 + AluSq SINE Alu 1 292 -21 2719 192 39 29 chr13 37485710 37485764 -64387405 - L1MB8 LINE L1 -15 6163 6111 1550 188 15 0 chr13 37485764 37486025 -64387144 + AluJb SINE Alu 1 265 -47 2108 71 4 11 chr13 37486025 37486293 -64386876 + AluSp SINE Alu 43 308 -5 2719 192 39 29 chr13 37486293 37486853 -64386316 - L1MB8 LINE L1 -66 6112 5542 250 279 59 0 chr13 37487016 37487084 -64386085 + Charlie7 DNA MER1_type 3 74 -2538 187 299 13 39 chr13 37487386 37487463 -64385706 + MIR SINE MIR 28 102 -106 331 270 110 57 chr13 37488402 37488489 -64384680 - L2 LINE L2 -17 3296 3215 2097 102 54 3 chr13 37488489 37488783 -64384386 + AluSq SINE Alu 1 309 -4 331 270 110 57 chr13 37488783 37488958 -64384211 - L2 LINE L2 -98 3215 3020 339 274 25 89 chr13 37489617 37489774 -64383395 + L2 LINE L2 3165 3311 -2 2136 125 7 0 chr13 37490302 37490607 -64382562 + AluSx SINE Alu 1 307 -5 341 238 127 75 chr13 37490817 37491178 -64381991 + L1ME4a LINE L1 5653 6032 -89 347 269 34 7 chr13 37491456 37491605 -64381564 + (TA)n Simple_repeat Simple_repeat 2 154 0 2584 138 21 25 chr13 37491606 37492041 -64381128 - Tigger2a DNA MER2_type -1 433 1 2305 94 7 0 chr13 37492316 37492614 -64380555 - AluSx SINE Alu -12 300 1 788 293 166 43 chr13 37492661 37493274 -64379895 - L2 LINE L2 -5 3308 2772 1535 54 5 0 chr13 37493274 37493460 -64379709 + U2 snRNA snRNA 1 187 -1 788 293 166 43 chr13 37493460 37493488 -64379681 - L2 LINE L2 -541 2772 2749 2019 107 4 0 chr13 37493488 37493751 -64379418 + AluSg SINE Alu 1 264 -46 788 293 166 43 chr13 37493751 37494111 -64379058 - L2 LINE L2 -564 2749 2193 2326 107 0 0 chr13 37494591 37494900 -64378269 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr13 37494950 37494974 -64378195 + AT_rich Low_complexity Low_complexity 1 24 0 593 230 0 2 chr13 37497973 37498160 -64375009 + MER58A DNA MER1_type 4 220 -4 1587 185 13 23 chr13 37498560 37498862 -64374307 + AluJo SINE Alu 1 299 -13 468 254 79 0 chr13 37499443 37499569 -64373600 + MER117 DNA MER1_type 10 145 -52 583 177 0 0 chr13 37500093 37500189 -64372980 - Tigger7 DNA MER2_type -2 2485 2390 1404 202 20 0 chr13 37500193 37500446 -64372723 - Tigger7 DNA MER2_type -2224 263 6 211 286 0 18 chr13 37501447 37501503 -64371666 + L2 LINE L2 3252 3306 -7 2339 111 0 0 chr13 37502751 37503058 -64370111 - AluSx SINE Alu -5 307 1 457 196 61 68 chr13 37503363 37503526 -64369643 - MER112 DNA MER1_type -81 179 18 187 279 114 0 chr13 37503541 37503620 -64369549 - MIR SINE MIR -98 164 77 2141 118 0 10 chr13 37503672 37503968 -64369201 - AluSg SINE Alu -17 293 1 324 239 18 0 chr13 37504076 37504185 -64368984 + (TTA)n Simple_repeat Simple_repeat 1 111 0 1743 165 0 26 chr13 37504207 37504510 -64368659 - AluJb SINE Alu -16 296 2 249 67 0 0 chr13 37504647 37504677 -64368492 - Alu SINE Alu -128 47 18 2221 108 0 35 chr13 37505790 37506104 -64367065 - AluSq SINE Alu -10 303 1 279 326 59 8 chr13 37506111 37506251 -64366918 - MIR SINE MIR -62 146 14 297 314 8 40 chr13 37506739 37506798 -64366371 - MIR SINE MIR -6 256 197 2288 88 7 13 chr13 37506798 37507105 -64366064 - AluSx SINE Alu -7 305 1 297 314 8 40 chr13 37507105 37507169 -64366000 - MIR SINE MIR -65 197 137 659 132 0 0 chr13 37507678 37507798 -64365371 - AluSx SINE Alu 0 313 194 1073 121 0 0 chr13 37507799 37507940 -64365229 - AluSx SINE Alu -172 141 1 24 32 0 0 chr13 37508880 37508911 -64364258 + AT_rich Low_complexity Low_complexity 1 31 0 886 110 0 0 chr13 37508932 37509050 -64364119 - AluJb SINE Alu -194 118 1 505 118 0 0 chr13 37509462 37509538 -64363631 - AluJ/FLAM SINE Alu -235 77 2 1599 138 21 96 chr13 37509571 37509905 -64363264 + AluJo SINE Alu 1 309 -3 833 239 36 140 chr13 37510374 37510901 -64362268 + L2 LINE L2 2842 3313 0 2187 116 0 10 chr13 37511002 37511304 -64361865 + AluSx SINE Alu 1 299 -13 1296 156 125 8 chr13 37512155 37512411 -64360758 - L1MD3 LINE L1 -10 7985 7700 233 268 0 0 chr13 37512573 37512644 -64360525 - L1MC4 LINE L1 -368 7674 7604 1104 168 61 0 chr13 37512644 37512841 -64360328 - MER3 DNA MER1_type 0 209 1 738 178 259 0 chr13 37512915 37513089 -64360080 - MER20 DNA MER1_type 0 219 1 740 250 0 0 chr13 37513224 37513376 -64359793 - MER82 DNA MER2_type -500 153 2 425 318 57 5 chr13 37513539 37513731 -64359438 + MIR SINE MIR 46 247 -15 2230 110 3 13 chr13 37513766 37514076 -64359093 - AluSp SINE Alu -6 307 1 2361 94 3 0 chr13 37514475 37514774 -64358395 + AluSx SINE Alu 5 304 -8 1608 173 25 21 chr13 37515204 37515488 -64357681 - AluJo SINE Alu -27 285 1 325 212 197 23 chr13 37515498 37515630 -64357539 - L1M LINE L1 -697 5424 5270 2273 105 0 23 chr13 37516485 37516789 -64356380 + AluSx SINE Alu 1 297 -15 664 240 39 13 chr13 37516789 37516935 -64356234 + MER69A DNA AcHobo 22 174 -3 2541 110 3 30 chr13 37517353 37517566 -64355603 - THE1B LTR MaLR 0 364 164 2403 94 0 0 chr13 37517566 37517863 -64355306 + AluSc SINE Alu 1 297 -12 2541 110 3 30 chr13 37517863 37518021 -64355148 - THE1B LTR MaLR -200 164 3 2637 135 29 25 chr13 37518114 37518456 -64354713 - L1MB3 LINE L1 -7 6176 5830 2529 59 0 7 chr13 37518456 37518760 -64354409 - AluY SINE Alu -9 302 1 2637 135 29 25 chr13 37518760 37518905 -64354264 - L1MB3 LINE L1 -353 5830 5687 1972 136 0 3 chr13 37519035 37519322 -64353847 - AluSx SINE Alu -2 310 25 785 136 8 0 chr13 37519367 37519485 -64353684 + L1PA16 LINE L1 6039 6157 -9 21 57 0 0 chr13 37520743 37520778 -64352391 + AT_rich Low_complexity Low_complexity 1 35 0 387 287 55 29 chr13 37521048 37521276 -64351893 - MIR SINE MIR -23 239 3 685 193 8 0 chr13 37522054 37522173 -64350996 + MER58B DNA MER1_type 221 340 -1 811 293 86 40 chr13 37522321 37522751 -64350418 - LTR16A LTR ERVL 0 450 1 427 291 35 14 chr13 37524549 37524690 -64348479 - MIR SINE MIR -96 166 23 199 268 149 60 chr13 37525467 37525508 -64347661 + MIR SINE MIR 58 94 -168 2378 131 40 14 chr13 37525508 37525929 -64347240 + MSTB1 LTR MaLR 1 432 0 199 268 149 60 chr13 37525929 37526055 -64347114 + MIR SINE MIR 94 240 -22 229 267 105 0 chr13 37526097 37526183 -64346986 + MIR SINE MIR 68 162 -100 1436 212 54 59 chr13 37526183 37526589 -64346580 + MLT1C LTR MaLR 1 406 -61 2227 122 0 0 chr13 37526589 37526901 -64346268 - AluSx SINE Alu 0 312 1 1436 212 54 59 chr13 37526901 37526937 -64346232 + MLT1C LTR MaLR 406 441 -26 1994 94 42 14 chr13 37527415 37527701 -64345468 - AluSg SINE Alu -16 294 1 865 255 124 4 chr13 37528091 37528350 -64344819 + MER115 DNA AcHobo 401 690 -3 336 260 48 31 chr13 37528601 37528760 -64344409 + MLT1I LTR MaLR 293 409 0 2064 174 0 50 chr13 37528816 37529021 -64344148 - MLT1A1 LTR MaLR 0 365 186 1812 120 12 95 chr13 37529021 37529347 -64343822 + AluSc SINE Alu 1 299 -10 2064 174 0 50 chr13 37529347 37529525 -64343644 - MLT1A1 LTR MaLR -179 186 1 287 315 134 9 chr13 37529619 37529835 -64343334 + L2 LINE L2 1705 1947 -1367 30 0 0 0 chr13 37529884 37529914 -64343255 + AT_rich Low_complexity Low_complexity 1 30 0 280 236 179 85 chr13 37530375 37530587 -64342582 + L2 LINE L2 2026 2257 -1057 1038 235 77 9 chr13 37530638 37530851 -64342318 + L2 LINE L2 2391 2637 -677 308 222 12 25 chr13 37530851 37530932 -64342237 + MER116 DNA Mariner 1 80 0 1038 235 77 9 chr13 37530932 37531058 -64342111 + L2 LINE L2 2637 2753 -561 1827 142 7 27 chr13 37531078 37531201 -64341968 + AluJo SINE Alu 5 129 -183 288 0 0 0 chr13 37531201 37531233 -64341936 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1827 142 7 27 chr13 37531233 37531405 -64341764 + AluJo SINE Alu 129 294 -18 336 314 113 16 chr13 37531574 37531759 -64341410 + MIR SINE MIR 27 229 -33 324 303 56 14 chr13 37532086 37532228 -64340941 + MIR SINE MIR 63 210 -52 310 217 60 0 chr13 37532478 37532561 -64340608 + MER53 DNA DNA 6 93 -96 957 18 0 0 chr13 37533573 37533717 -64339452 + L1PA2 LINE L1 6046 6189 0 528 221 29 125 chr13 37533725 37533933 -64339236 - HAL1 LINE L1 -2317 190 3 2351 87 3 3 chr13 37534031 37534331 -64338838 - AluSc SINE Alu -9 300 1 274 346 31 16 chr13 37535283 37535410 -64337759 + LTR67 LTR ERVL 113 241 -316 414 284 8 8 chr13 37535479 37535606 -64337563 + LTR67 LTR ERVL 428 554 -3 1523 269 50 30 chr13 37536386 37536885 -64336284 - MER21B LTR ERV1 -38 825 317 198 200 22 0 chr13 37537218 37537263 -64335906 + L2 LINE L2 3227 3272 0 265 266 85 77 chr13 37537830 37538078 -64335091 - L1ME LINE L1 -224 5897 5648 2111 143 3 10 chr13 37538081 37538405 -64334764 - AluSx SINE Alu 0 322 1 316 338 25 0 chr13 37538484 37538641 -64334528 - L1ME LINE L1 -468 5653 5493 281 151 38 0 chr13 37538664 37538717 -64334452 - L1MA10 LINE L1 -2 6332 6278 258 269 132 12 chr13 37538725 37538892 -64334277 - L1ME LINE L1 -2330 5478 5292 874 101 122 0 chr13 37539103 37539251 -64333918 - LTR47A LTR ERVL -8 444 279 1495 213 14 70 chr13 37539527 37539941 -64333228 - MLT2C1 LTR ERVL -4 393 3 451 258 61 0 chr13 37540525 37540657 -64332512 - MIR SINE MIR -57 205 66 2464 160 44 0 chr13 37540838 37541245 -64331924 - MSTB LTR MaLR 0 426 2 2193 111 0 3 chr13 37542400 37542698 -64330471 + AluSx SINE Alu 1 297 -15 1233 177 357 0 chr13 37543039 37543434 -64329735 + L1ME4a LINE L1 5435 5970 -194 469 228 26 9 chr13 37543580 37543694 -64329475 - L1ME2 LINE L1 -9 6155 6040 2338 93 7 0 chr13 37543699 37544001 -64329168 - AluSx SINE Alu -7 305 2 2157 103 7 20 chr13 37544184 37544484 -64328685 + AluSx SINE Alu 1 296 -16 337 302 0 9 chr13 37544501 37544607 -64328562 + MIR SINE MIR 157 261 -1 194 289 19 0 chr13 37544771 37544823 -64328346 - L3 LINE CR1 -4 1573 1521 198 143 0 0 chr13 37545028 37545063 -64328106 + (TG)n Simple_repeat Simple_repeat 1 35 0 498 103 0 0 chr13 37547396 37547474 -64325695 + (TA)n Simple_repeat Simple_repeat 1 78 0 247 253 49 31 chr13 37547922 37548084 -64325085 + L1ME4a LINE L1 5955 6119 -2 301 279 16 15 chr13 37548166 37548337 -64324832 + L1ME LINE L1 5292 5463 -699 857 209 25 5 chr13 37548365 37548566 -64324603 + L1 LINE L1 5024 5228 -918 5467 141 71 5 chr13 37548758 37549878 -64323291 + L1MA5 LINE L1 5106 6300 0 2223 117 3 0 chr13 37550666 37550964 -64322205 - AluSx SINE Alu -13 299 1 2255 107 3 0 chr13 37550974 37551274 -64321895 - AluY SINE Alu -10 301 1 473 316 79 15 chr13 37551767 37552308 -64320861 - L1MC4a LINE L1 -414 5690 5264 1156 174 124 10 chr13 37552316 37552619 -64320550 + MER44D DNA MER2_type 1 455 -2032 229 19 19 74 chr13 37552619 37552673 -64320496 + (TTA)n Simple_repeat Simple_repeat 1 51 0 1156 174 124 10 chr13 37552673 37552725 -64320444 + MER44D DNA MER2_type 455 500 -105 300 291 14 35 chr13 37553349 37553370 -64319799 + L1ME4a LINE L1 5981 6001 -120 853 237 101 9 chr13 37553370 37553589 -64319580 + MER8 DNA MER2_type 1 239 0 300 291 14 35 chr13 37553589 37553708 -64319461 + L1ME4a LINE L1 6001 6118 -3 802 159 15 0 chr13 37554543 37554675 -64318494 + MER44D DNA MER2_type 571 704 -1 321 90 8 90 chr13 37554675 37554808 -64318361 + (TA)n Simple_repeat Simple_repeat 2 123 0 1041 292 32 40 chr13 37554831 37555652 -64317517 - L1MC4a LINE L1 -918 5211 4398 359 258 108 52 chr13 37555783 37555977 -64317192 - L1MC4a LINE L1 -4443 1686 1482 296 266 209 33 chr13 37556115 37556416 -64316753 - L1MC4a LINE L1 -4862 1257 904 343 338 110 18 chr13 37556457 37556676 -64316493 - L1MC4a LINE L1 -5318 801 563 269 291 30 22 chr13 37556887 37557021 -64316148 - L1M4 LINE L1 -2616 3530 3396 1848 141 53 6 chr13 37558888 37559229 -64313940 + MLT1A1 LTR MaLR 1 357 -8 2120 118 0 10 chr13 37559424 37559721 -64313448 - AluSx SINE Alu -18 294 1 533 320 98 46 chr13 37560102 37560143 -64313026 + HAL1b LINE L1 42 79 -2428 189 94 0 0 chr13 37560143 37560175 -64312994 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 533 320 98 46 chr13 37560175 37560667 -64312502 + HAL1b LINE L1 79 1704 -803 1517 136 24 12 chr13 37561168 37561418 -64311751 + AluJo SINE Alu 49 301 -11 507 307 103 65 chr13 37561597 37562210 -64310959 + L1M4 LINE L1 4160 4795 -1351 1567 182 149 29 chr13 37562957 37563374 -64309795 - MLT1C LTR MaLR 0 467 1 532 347 116 22 chr13 37563715 37564157 -64309012 + L2 LINE L2 2781 3267 -5 2432 80 0 3 chr13 37565764 37566064 -64307105 - AluSc SINE Alu -10 299 1 3736 215 45 17 chr13 37566236 37566438 -64306731 - L1 LINE L1 -2900 3948 3753 2066 145 3 0 chr13 37566438 37566734 -64306435 - AluSx SINE Alu -15 297 1 3736 215 45 17 chr13 37566734 37567782 -64305387 - L1 LINE L1 -3095 3753 2661 422 291 42 91 chr13 37567782 37567831 -64305338 - L2 LINE L2 -580 2734 2684 2336 86 0 43 chr13 37567831 37568156 -64305013 - AluY SINE Alu 0 311 1 422 291 42 91 chr13 37568156 37568371 -64304798 - L2 LINE L2 -630 2684 2483 186 43 0 0 chr13 37568418 37568441 -64304728 + (TG)n Simple_repeat Simple_repeat 2 24 0 1812 117 0 0 chr13 37568625 37568899 -64304270 + L1P4 LINE L1 5402 5675 -486 631 263 23 107 chr13 37568909 37569145 -64304024 - MLT1I LTR MaLR -21 388 181 2059 106 0 0 chr13 37569145 37569431 -64303738 - AluSx SINE Alu 0 302 17 631 263 23 107 chr13 37569431 37569501 -64303668 - MLT1I LTR MaLR -228 181 107 297 270 27 0 chr13 37569976 37570050 -64303119 - MER5C DNA MER1_type -248 76 1 465 339 11 17 chr13 37570079 37570256 -64302913 - MIR3 SINE MIR -2 206 31 245 316 43 34 chr13 37570394 37570511 -64302658 + MIR SINE MIR 22 139 -123 1287 171 21 41 chr13 37570555 37571016 -64302153 + MLT1D LTR MaLR 1 497 -8 2277 82 24 0 chr13 37572318 37572609 -64300560 - AluSq SINE Alu -15 298 1 324 261 23 0 chr13 37572620 37572708 -64300461 + MIR SINE MIR 100 189 -73 23 33 0 0 chr13 37572752 37572782 -64300387 + AT_rich Low_complexity Low_complexity 1 30 0 1921 119 48 0 chr13 37573111 37573480 -64299689 - AluSx SINE Alu 0 382 1 1896 156 7 16 chr13 37574696 37575003 -64298166 - AluJo SINE Alu -8 304 1 210 71 0 0 chr13 37577302 37577330 -64295839 + (TA)n Simple_repeat Simple_repeat 2 29 0 192 125 0 0 chr13 37577334 37577366 -64295803 + (CA)n Simple_repeat Simple_repeat 1 32 0 250 274 14 0 chr13 37577610 37577683 -64295486 + MER117 DNA MER1_type 67 140 -57 875 272 68 57 chr13 37578151 37578621 -64294548 - MLT1J LTR MaLR -1 510 36 231 267 0 17 chr13 37579014 37579074 -64294095 - L2 LINE L2 0 3272 3214 443 336 0 8 chr13 37579136 37579264 -64293905 + L2 LINE L2 3187 3313 0 297 322 71 71 chr13 37579861 37580156 -64293013 + L2 LINE L2 2671 2965 -349 279 269 0 0 chr13 37580167 37580234 -64292935 + L2 LINE L2 3198 3264 -8 1280 49 6 0 chr13 37580768 37580931 -64292238 + L1PA4 LINE L1 5989 6152 -3 219 204 0 0 chr13 37580934 37580988 -64292181 + A-rich Low_complexity Low_complexity 1 54 0 1317 164 14 0 chr13 37581215 37581435 -64291734 - AluJb SINE Alu -3 309 87 2387 94 3 28 chr13 37581599 37581919 -64291250 - AluSx SINE Alu 0 312 1 1832 147 33 10 chr13 37582424 37582723 -64290446 - AluJb SINE Alu -5 307 2 4019 73 4 37 chr13 37582774 37583310 -64289859 - SVA Other Other -3 1383 866 336 292 64 40 chr13 37583869 37584071 -64289098 + L1MC4a LINE L1 4638 4844 -1302 363 23 0 0 chr13 37584465 37584509 -64288660 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr13 37584773 37584808 -64288361 + AT_rich Low_complexity Low_complexity 1 35 0 247 294 17 25 chr13 37585367 37585486 -64287683 + GA-rich Low_complexity Low_complexity 1 118 0 1974 125 7 0 chr13 37585664 37585973 -64287196 + AluJo SINE Alu 1 311 0 624 299 13 0 chr13 37586130 37586287 -64286882 - MER5A DNA MER1_type 0 189 31 602 262 119 7 chr13 37586536 37586822 -64286347 + L1MC4a LINE L1 5597 5914 -1894 315 278 100 96 chr13 37586970 37587240 -64285929 - L1MC4a LINE L1 -1904 5904 5634 582 336 20 16 chr13 37587449 37587693 -64285476 + MLT1K LTR MaLR 106 350 -238 326 80 13 40 chr13 37587739 37587814 -64285355 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 984 175 132 70 chr13 37588290 37588787 -64284382 + LTR36 LTR ERV1 1 602 -9 191 209 35 12 chr13 37589290 37589340 -64283829 + CT-rich Low_complexity Low_complexity 4 58 -33 2281 65 3 37 chr13 37589340 37589661 -64283508 - AluY SINE Alu -1 310 1 191 209 35 12 chr13 37589661 37589696 -64283473 + CT-rich Low_complexity Low_complexity 58 91 0 461 194 20 0 chr13 37589713 37589822 -64283347 - L1MC4 LINE L1 0 8042 7671 5834 135 23 23 chr13 37590253 37591980 -64281189 - L1MA5A LINE L1 -1 6296 4559 1129 244 92 33 chr13 37592020 37592478 -64280691 - L1MC4 LINE L1 -124 7918 7434 198 307 117 51 chr13 37592596 37592733 -64280436 - L2 LINE L2 -232 3040 2895 204 289 36 108 chr13 37592748 37592914 -64280255 + L2 LINE L2 2883 3036 -236 443 248 30 38 chr13 37592926 37593059 -64280110 + MIR SINE MIR 13 144 -118 1386 170 98 48 chr13 37593081 37593417 -64279752 + MLT1A1 LTR MaLR 13 365 0 399 311 31 59 chr13 37593959 37594414 -64278755 + L2 LINE L2 693 2977 -336 233 189 11 84 chr13 37594457 37594647 -64278522 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 1063 292 60 6 chr13 37594869 37595383 -64277786 - L1ME3A LINE L1 -230 5940 5399 197 250 23 0 chr13 37595550 37595594 -64277575 + L2 LINE L2 3261 3305 -8 26 0 0 0 chr13 37596346 37596372 -64276797 + AT_rich Low_complexity Low_complexity 1 26 0 1432 130 18 102 chr13 37596753 37596905 -64276264 - AluSq SINE Alu -52 261 143 2261 113 3 0 chr13 37596905 37597214 -64275955 - AluSx SINE Alu -2 310 1 1432 130 18 102 chr13 37597214 37597346 -64275823 - AluSq SINE Alu -170 143 1 401 305 75 59 chr13 37597409 37597848 -64275321 + HAL1 LINE L1 508 953 -1554 683 201 47 47 chr13 37597868 37597927 -64275242 + L1MD1 LINE L1 5996 6054 -188 1761 149 117 3 chr13 37597927 37598235 -64274934 + MER61A LTR ERV1 1 343 0 683 201 47 47 chr13 37598235 37598409 -64274760 + L1MD1 LINE L1 6053 6229 -13 2354 205 12 2 chr13 37598463 37599049 -64274120 - L1 LINE L1 -2377 3769 3178 1855 310 103 10 chr13 37599070 37600355 -64272814 + HAL1 LINE L1 1048 2451 -56 2169 126 0 0 chr13 37600400 37600702 -64272467 - AluSq SINE Alu -7 306 5 33 43 0 0 chr13 37600795 37600842 -64272327 + AT_rich Low_complexity Low_complexity 1 47 0 2131 160 21 8 chr13 37600856 37601231 -64271938 - MSTB LTR MaLR 0 426 47 397 324 9 0 chr13 37601572 37601677 -64271492 + L2 LINE L2 3206 3311 -2 333 269 13 0 chr13 37602833 37602911 -64270258 + L2 LINE L2 3235 3313 0 2406 91 0 19 chr13 37602985 37603303 -64269866 + AluSq SINE Alu 1 312 -1 1005 191 0 0 chr13 37603309 37603477 -64269692 + AluJo SINE Alu 121 288 -24 519 306 74 93 chr13 37603529 37603775 -64269394 - L2 LINE L2 -2 3270 3021 5091 90 18 26 chr13 37603775 37604555 -64268614 - L1MA2 LINE L1 -7 6297 5524 519 306 74 93 chr13 37604555 37604616 -64268553 - L2 LINE L2 -251 3021 2960 1265 210 34 27 chr13 37604616 37604911 -64268258 + AluJb SINE Alu 1 297 -5 519 306 74 93 chr13 37604911 37605073 -64268096 - L2 LINE L2 -312 2960 2809 5632 136 34 29 chr13 37605176 37606302 -64266867 - L1MA5A LINE L1 -1 6296 5165 777 133 0 0 chr13 37606402 37606522 -64266647 + AluSc SINE Alu 190 309 0 2015 77 0 11 chr13 37606563 37606835 -64266334 - AluY SINE Alu -2 309 41 21 0 0 0 chr13 37607187 37607208 -64265961 + AT_rich Low_complexity Low_complexity 1 21 0 229 356 130 9 chr13 37607639 37607754 -64265415 - L2 LINE L2 -7 3265 3137 180 97 0 0 chr13 37607898 37607929 -64265240 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1613 95 0 5 chr13 37609413 37609624 -64263545 + AluSp SINE Alu 94 303 -10 537 273 98 19 chr13 37610091 37610296 -64262873 + L2 LINE L2 3015 3235 -78 1938 215 107 38 chr13 37610296 37610878 -64262291 - MLT1E2 LTR MaLR -4 622 1 1524 229 17 67 chr13 37610884 37611290 -64261879 - MLT1E2-int LTR MaLR -15 1356 971 712 305 5 10 chr13 37611476 37611673 -64261496 - MLT1E2-int LTR MaLR -484 887 692 1054 229 84 46 chr13 37611690 37612035 -64261134 + L1ME2 LINE L1 5806 6163 -1 207 0 0 0 chr13 37612082 37612105 -64261064 + (TA)n Simple_repeat Simple_repeat 1 23 0 962 171 136 11 chr13 37612105 37612281 -64260888 - AluJb SINE Alu -28 284 87 2364 170 8 31 chr13 37612288 37612770 -64260399 - L1MB4 LINE L1 0 6180 5710 392 213 37 37 chr13 37612772 37612880 -64260289 - L1ME LINE L1 -385 5779 5672 220 217 0 0 chr13 37613158 37613204 -64259965 + L2 LINE L2 3268 3313 0 636 304 190 21 chr13 37613289 37613762 -64259407 + L2 LINE L2 1527 2079 -1235 449 342 149 32 chr13 37613952 37614486 -64258683 + L2 LINE L2 2720 3313 0 716 335 84 16 chr13 37614536 37614903 -64258266 + L2 LINE L2 2462 2853 -461 195 100 0 0 chr13 37615987 37616017 -64257152 + (TA)n Simple_repeat Simple_repeat 1 30 0 1020 222 14 9 chr13 37616059 37616275 -64256894 + L1MC3 LINE L1 6592 6808 -977 24 53 0 0 chr13 37616421 37616459 -64256710 + AT_rich Low_complexity Low_complexity 1 38 0 517 337 6 12 chr13 37616781 37616947 -64256222 - MIR3 SINE MIR -24 184 20 420 212 10 0 chr13 37618064 37618163 -64255006 - L1M4 LINE L1 -1410 4805 4706 3986 223 42 44 chr13 37618194 37619825 -64253344 - L1MEc LINE L1 -2727 3488 1881 22 0 0 0 chr13 37621060 37621082 -64252087 + AT_rich Low_complexity Low_complexity 1 22 0 2413 110 100 3 chr13 37621437 37621827 -64251342 - MSTA LTR MaLR 0 428 1 22 56 0 0 chr13 37621916 37621952 -64251217 + AT_rich Low_complexity Low_complexity 1 36 0 1787 244 43 82 chr13 37622052 37622973 -64250196 - L1MEc LINE L1 -3193 3022 2237 1449 210 14 14 chr13 37622973 37623263 -64249906 - AluJo SINE Alu -22 290 1 1787 244 43 82 chr13 37623263 37623860 -64249309 - L1MEc LINE L1 -3978 2237 1618 676 95 0 0 chr13 37623974 37624069 -64249100 + AluS SINE Alu 1 95 -218 2828 250 77 11 chr13 37624078 37625261 -64247908 - L1M4c LINE L1 -3742 2902 1636 14742 181 20 12 chr13 37625265 37627324 -64245845 - L1PA13 LINE L1 -1 6162 4121 2500 62 7 3 chr13 37627324 37627630 -64245539 + AluY SINE Alu 1 307 -4 14742 181 20 12 chr13 37627630 37628045 -64245124 - L1PA13 LINE L1 -2042 4121 3711 210 71 0 0 chr13 37628045 37628073 -64245096 + (TTG)n Simple_repeat Simple_repeat 3 30 0 14742 181 20 12 chr13 37628073 37628984 -64244185 - L1PA13 LINE L1 -2452 3711 2742 2362 116 37 6 chr13 37628984 37629337 -64243832 + THE1B LTR MaLR 1 364 0 14742 181 20 12 chr13 37629337 37629752 -64243417 - L1PA13 LINE L1 -3421 2742 2332 1476 246 18 6 chr13 37629764 37630256 -64242913 - L1M4c LINE L1 -2613 4031 3534 1509 201 21 12 chr13 37630259 37630593 -64242576 - L1MC2 LINE L1 -80 6264 5928 3705 222 35 49 chr13 37630607 37631977 -64241192 - L1M4c LINE L1 -4072 2574 1137 437 252 0 0 chr13 37631977 37632080 -64241089 + U13 snRNA snRNA 1 103 -1 3705 222 35 49 chr13 37632080 37632265 -64240904 - L1M4c LINE L1 -5509 1137 951 505 155 3 8 chr13 37632257 37632356 -64240813 - L1M4c LINE L1 -5175 1469 1307 * 1100 252 33 34 chr13 37632375 37632757 -64240412 - L1M4c LINE L1 -5588 954 601 253 138 0 108 chr13 37632763 37632828 -64240341 + L1MC4 LINE L1 7924 8041 -1 569 295 167 9 chr13 37632838 37633048 -64240121 + MIR SINE MIR 20 262 0 180 0 0 0 chr13 37633565 37633585 -64239584 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 24 0 0 0 chr13 37634187 37634211 -64238958 + AT_rich Low_complexity Low_complexity 1 24 0 232 206 88 69 chr13 37634885 37635045 -64238124 - L1MCc LINE L1 -4955 607 445 186 103 0 0 chr13 37635085 37635114 -64238055 + (TC)n Simple_repeat Simple_repeat 1 29 0 1757 213 33 24 chr13 37635465 37635636 -64237533 + MSTB LTR MaLR 1 169 -257 2522 57 0 0 chr13 37635636 37635935 -64237234 + AluY SINE Alu 1 299 -12 2092 136 13 0 chr13 37635945 37636246 -64236923 + AluSx SINE Alu 1 305 -7 1757 213 33 24 chr13 37636246 37636485 -64236684 + MSTB LTR MaLR 177 426 0 3724 168 21 1 chr13 37636486 37637146 -64236023 + MSTB-int LTR MaLR 2 674 -977 1194 238 33 40 chr13 37637149 37637452 -64235717 + MLT2B3 LTR ERVL 254 554 0 682 169 63 7 chr13 37637452 37637594 -64235575 + MSTB-int LTR MaLR 1501 1650 -1 2082 160 71 22 chr13 37637595 37638001 -64235168 + MSTB LTR MaLR 1 426 0 565 182 36 0 chr13 37638001 37638110 -64235059 - FLAM_A SINE Alu -19 114 1 259 269 97 82 chr13 37638133 37638464 -64234705 - L1MCc LINE L1 -5704 366 31 21 36 0 0 chr13 37640251 37640279 -64232890 + AT_rich Low_complexity Low_complexity 1 28 0 1740 181 10 3 chr13 37641467 37641776 -64231393 + AluJo SINE Alu 1 311 -1 190 276 76 67 chr13 37642167 37642272 -64230897 + L2 LINE L2 1719 1824 -1490 7233 175 24 46 chr13 37642558 37643865 -64229304 + L1M1 LINE L1 1098 2367 -4482 2277 106 0 6 chr13 37643865 37644177 -64228992 - AluSg SINE Alu 0 310 1 7233 175 24 46 chr13 37644177 37644409 -64228760 + L1M1 LINE L1 2367 2603 -4246 1492 160 12 78 chr13 37644402 37644529 -64228640 + L1M1 LINE L1 5503 5637 -1336 * 6035 24 0 0 chr13 37644529 37645227 -64227942 - L1PA3 LINE L1 -3 6152 5455 1492 160 12 78 chr13 37645227 37645767 -64227402 + L1M1 LINE L1 5637 6230 -743 392 290 136 19 chr13 37646585 37646740 -64226429 - L2 LINE L2 -4 3268 3096 31902 94 9 24 chr13 37646821 37653122 -64220047 + L1PA8A LINE L1 144 6445 -1 312 191 0 16 chr13 37653188 37653251 -64219918 + MER20 DNA MER1_type 158 219 0 339 263 139 52 chr13 37653252 37653446 -64219723 + HAL1b LINE L1 634 844 -504 2883 228 41 2 chr13 37653852 37654465 -64218704 + MER82 DNA MER2_type 4 640 -13 247 159 32 32 chr13 37655838 37655901 -64217268 + (CGGGG)n Simple_repeat Simple_repeat 2 64 0 228 311 0 0 chr13 37658649 37658710 -64214459 - L2 LINE L2 -2 3270 3210 22 35 0 0 chr13 37658834 37658863 -64214306 + AT_rich Low_complexity Low_complexity 1 29 0 699 210 93 14 chr13 37659181 37659395 -64213774 + MIR SINE MIR 23 253 -9 972 164 97 10 chr13 37661981 37662000 -64211169 - L1 LINE L1 -758 5388 5372 1656 161 14 11 chr13 37662000 37662286 -64210883 - AluJo SINE Alu -25 287 1 972 164 97 10 chr13 37662286 37662473 -64210696 - L1 LINE L1 -774 5372 5164 293 262 131 16 chr13 37662470 37662592 -64210577 - L1ME LINE L1 -668 5453 5318 * 1915 146 6 22 chr13 37662622 37662938 -64210231 - AluJo SINE Alu -1 311 1 750 293 45 12 chr13 37663038 37663280 -64209889 + MIR SINE MIR 13 262 0 234 150 0 0 chr13 37663409 37663449 -64209720 + (TA)n Simple_repeat Simple_repeat 1 40 0 364 319 131 51 chr13 37663564 37663899 -64209270 + L1MEd LINE L1 51 412 -5707 410 304 122 45 chr13 37663918 37664320 -64208849 + L1MEd LINE L1 2317 2749 -3380 203 267 0 0 chr13 37664423 37664468 -64208701 - L2 LINE L2 -557 2757 2713 233 278 0 0 chr13 37664951 37665005 -64208164 - MIR3 SINE MIR -49 159 106 570 319 86 9 chr13 37665046 37665278 -64207891 - MIR SINE MIR -7 255 6 422 280 98 0 chr13 37665983 37666115 -64207054 + L2 LINE L2 1087 1231 -2083 2494 63 13 0 chr13 37666119 37666419 -64206750 - AluSx SINE Alu -8 304 1 2057 190 39 28 chr13 37666426 37666960 -64206209 + L1MC4a LINE L1 7215 7808 0 4388 250 92 60 chr13 37667000 37667891 -64205278 + L2 LINE L2 1245 2107 -1206 1096 150 0 6 chr13 37667891 37668058 -64205111 - L1PB3 LINE L1 0 6154 5989 4388 250 92 60 chr13 37668058 37668098 -64205071 + L2 LINE L2 2107 2144 -1169 2218 131 0 0 chr13 37668098 37668403 -64204766 - AluSx SINE Alu -7 305 1 4388 250 92 60 chr13 37668403 37669479 -64203690 + L2 LINE L2 2144 3300 -13 198 103 0 0 chr13 37669479 37669508 -64203661 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 405 214 292 68 chr13 37670071 37670263 -64202906 + MER102a DNA MER1_type 82 316 -14 225 368 0 0 chr13 37670952 37671028 -64202141 + L2 LINE L2 3150 3225 -47 227 371 109 0 chr13 37671393 37671568 -64201601 + L2 LINE L2 2090 2283 -1031 2353 151 38 21 chr13 37671711 37672129 -64201040 - MSTB1 LTR MaLR 0 432 8 194 280 70 40 chr13 37672658 37672758 -64200411 + MIR SINE MIR 112 214 -48 2150 142 0 0 chr13 37673116 37673427 -64199742 - AluSx SINE Alu -1 311 1 2238 82 0 0 chr13 37674154 37674467 -64198702 - AluY SINE Alu 0 313 1 217 236 236 0 chr13 37674589 37674661 -64198508 - L2 LINE L2 -35 3237 3149 237 269 58 87 chr13 37674676 37674780 -64198389 + L2 LINE L2 2920 3020 -252 3462 170 47 2 chr13 37674789 37675412 -64197757 - L1MA7 LINE L1 0 6291 5641 877 193 20 0 chr13 37675528 37675678 -64197491 - MER45A DNA AcHobo 0 178 26 1239 111 30 30 chr13 37675680 37675878 -64197291 - L1MA7 LINE L1 -685 5627 5430 817 185 23 0 chr13 37676270 37676400 -64196769 + MER45A DNA AcHobo 46 178 0 309 343 107 38 chr13 37677217 37677582 -64195587 + L2 LINE L2 2354 2743 -571 1953 196 96 10 chr13 37677587 37678005 -64195164 + MLT1C LTR MaLR 12 465 -2 1698 194 86 56 chr13 37678038 37678501 -64194668 + MLT2B1 LTR ERVL 2 478 -42 225 132 0 0 chr13 37678502 37678540 -64194629 + (CATA)n Simple_repeat Simple_repeat 1 38 0 252 310 218 21 chr13 37678819 37678961 -64194208 - L2 LINE L2 0 3272 3103 537 290 16 52 chr13 37678967 37679215 -64193954 + HAL1 LINE L1 158 396 -2111 1482 286 34 18 chr13 37679231 37679271 -64193898 + HAL1 LINE L1 1029 1067 -1440 1341 180 138 48 chr13 37679271 37679604 -64193565 + MLT1A1 LTR MaLR 1 363 -2 1482 286 34 18 chr13 37679604 37680115 -64193054 + HAL1 LINE L1 1067 1589 -918 1437 229 144 58 chr13 37680117 37680930 -64192239 + HAL1 LINE L1 1625 2507 0 2801 148 27 32 chr13 37680930 37681091 -64192078 + L1MB7 LINE L1 5661 5821 -363 1896 164 0 16 chr13 37681091 37681402 -64191767 + AluJo SINE Alu 1 306 -6 2801 148 27 32 chr13 37681402 37681767 -64191402 + L1MB7 LINE L1 5821 6184 0 361 250 0 19 chr13 37681781 37681885 -64191284 + MIR SINE MIR 147 248 -14 1040 218 13 18 chr13 37681900 37682129 -64191040 - MIR SINE MIR -27 235 8 192 289 53 40 chr13 37682244 37682320 -64190849 + L2 LINE L2 3136 3212 -60 667 236 67 20 chr13 37683119 37683314 -64189855 + MER97a DNA MER1_type? 14 217 -677 226 241 133 0 chr13 37683631 37683714 -64189455 + L2 LINE L2 3158 3251 -62 277 109 0 0 chr13 37685336 37685382 -64187787 + Alu SINE Alu 257 302 0 211 264 107 39 chr13 37687431 37687613 -64185556 - MIR SINE MIR 0 262 34 239 140 20 0 chr13 37687730 37687780 -64185389 + GA-rich Low_complexity Low_complexity 2 52 0 22 56 0 0 chr13 37687792 37687828 -64185341 + AT_rich Low_complexity Low_complexity 1 36 0 244 305 74 0 chr13 37689505 37689600 -64183569 - MIR SINE MIR -2 260 159 260 53 26 0 chr13 37689843 37689881 -64183288 + (CAT)n Simple_repeat Simple_repeat 3 41 0 204 97 0 0 chr13 37689881 37689912 -64183257 + (CAG)n Simple_repeat Simple_repeat 3 33 0 671 75 0 0 chr13 37690026 37690129 -64183040 - AluSg/x SINE Alu 0 306 204 2148 58 4 0 chr13 37690130 37690391 -64182778 - AluY SINE Alu -49 262 1 186 103 0 0 chr13 37690818 37690847 -64182322 + (TC)n Simple_repeat Simple_repeat 2 30 0 414 120 0 0 chr13 37690847 37690922 -64182247 + (CA)n Simple_repeat Simple_repeat 1 75 0 1956 112 48 10 chr13 37691403 37691716 -64181453 - L1MA5A LINE L1 0 6297 5973 254 272 74 0 chr13 37692308 37692446 -64180723 + MIR SINE MIR 34 146 -62 630 294 23 15 chr13 37692521 37692742 -64180427 - MIR SINE MIR -13 249 25 2074 106 47 13 chr13 37692888 37693189 -64179980 - AluSq SINE Alu -2 311 1 242 206 16 0 chr13 37694281 37694344 -64178825 + CT-rich Low_complexity Low_complexity 2 65 0 423 311 11 62 chr13 37694349 37694526 -64178643 - MIR SINE MIR -36 226 59 248 264 28 0 chr13 37694835 37694907 -64178262 + MIR SINE MIR 70 143 -65 2227 127 0 9 chr13 37695234 37695549 -64177620 - AluSx SINE Alu 0 312 1 606 316 58 82 chr13 37695550 37695691 -64177478 + L2 LINE L2 2937 3080 -192 1026 161 18 161 chr13 37695691 37695970 -64177199 + MER8 DNA MER2_type 1 239 0 606 316 58 82 chr13 37695970 37696170 -64176999 + L2 LINE L2 3080 3270 -2 545 184 203 18 chr13 37696491 37696654 -64176515 + MIR SINE MIR 70 262 0 476 324 166 8 chr13 37696787 37697028 -64176141 + L2 LINE L2 2994 3272 0 206 206 95 48 chr13 37697684 37697747 -64175422 - L2 LINE L2 -18 3254 3189 1890 143 40 13 chr13 37698006 37698307 -64174862 + 7SLRNA srpRNA srpRNA 5 313 -7 539 258 45 17 chr13 37698585 37698763 -64174406 + MIR3 SINE MIR 21 203 -5 290 294 297 21 chr13 37698780 37699113 -64174056 + L3b LINE CR1 1109 1533 -50 292 273 30 0 chr13 37699525 37699591 -64173578 - MIR SINE MIR -60 148 81 22 0 0 0 chr13 37699719 37699741 -64173428 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 37701795 37701823 -64171346 + AT_rich Low_complexity Low_complexity 1 28 0 2064 148 0 3 chr13 37702355 37702660 -64170509 - AluSx SINE Alu -8 304 1 337 305 21 43 chr13 37702850 37702991 -64170178 + MIR3 SINE MIR 47 184 -24 305 196 0 0 chr13 37703707 37703763 -64169406 + L2 LINE L2 3258 3313 0 10677 60 7 12 chr13 37704098 37705486 -64167683 - SVA Other Other -842 1386 1 201 74 0 0 chr13 37705484 37705511 -64167658 + (AGGGGG)n Simple_repeat Simple_repeat 5 31 0 274 369 28 14 chr13 37705568 37705709 -64167460 + MIR3 SINE MIR 3 145 -63 296 189 14 0 chr13 37706132 37706206 -64166963 + GA-rich Low_complexity Low_complexity 3 77 0 38 61 0 0 chr13 37706364 37706430 -64166739 + AT_rich Low_complexity Low_complexity 1 66 0 918 267 137 34 chr13 37707358 37707882 -64165287 - MLT1G1 LTR MaLR 0 595 18 2034 98 74 0 chr13 37709724 37710009 -64163160 + AluSx SINE Alu 1 306 -6 309 236 0 38 chr13 37710064 37710170 -64162999 + MER103 DNA DNA 56 157 -9 222 204 31 0 chr13 37710470 37710568 -64162601 + (TA)n Simple_repeat Simple_repeat 1 101 0 2463 71 3 0 chr13 37710631 37710939 -64162230 + AluY SINE Alu 1 309 -2 2333 112 0 0 chr13 37714023 37714327 -64158842 - AluSq SINE Alu -4 309 6 635 221 39 0 chr13 37715391 37715545 -64157624 + L1MA9 LINE L1 6005 6164 -148 228 143 0 0 chr13 37715545 37715587 -64157582 + (GAAA)n Simple_repeat Simple_repeat 1 42 0 357 188 8 117 chr13 37715587 37715715 -64157454 + L1MA9 LINE L1 6159 6272 -40 231 340 104 0 chr13 37716365 37716471 -64156698 + MIR SINE MIR 36 152 -110 21 0 0 0 chr13 37716505 37716526 -64156643 + AT_rich Low_complexity Low_complexity 1 21 0 582 237 46 26 chr13 37717214 37717366 -64155803 - MIR SINE MIR 0 262 108 181 300 0 0 chr13 37717364 37717414 -64155755 + L3b LINE CR1 1220 1269 -314 * 25 51 0 0 chr13 37720076 37720115 -64153054 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr13 37720243 37720269 -64152900 + AT_rich Low_complexity Low_complexity 1 26 0 245 340 135 7 chr13 37721616 37721757 -64151412 + L2 LINE L2 2218 2376 -938 2898 3 0 0 chr13 37721812 37722123 -64151046 - AluYa5 SINE Alu 0 311 1 187 350 36 21 chr13 37722141 37722281 -64150888 + L2 LINE L2 2399 2540 -774 2393 80 0 16 chr13 37723650 37723963 -64149206 - AluY SINE Alu 0 311 4 569 71 12 0 chr13 37724010 37724094 -64149075 - L1PA15 LINE L1 -22 6143 6059 403 281 92 7 chr13 37724162 37724315 -64148854 + MIR SINE MIR 93 258 -4 202 146 0 24 chr13 37725227 37725268 -64147901 + (TTTTTA)n Simple_repeat Simple_repeat 4 43 0 616 230 7 66 chr13 37725607 37725881 -64147288 - L1MEc LINE L1 -3631 2584 2327 * 4033 257 109 28 chr13 37725878 37726320 -64146849 - L1MEc LINE L1 -4525 1871 1466 2331 112 0 0 chr13 37726320 37726625 -64146544 - AluSg SINE Alu -5 305 1 4033 257 109 28 chr13 37726625 37727880 -64145289 - L1MEc LINE L1 -4930 1466 37 2256 107 3 0 chr13 37728808 37729107 -64144062 + AluSx SINE Alu 4 303 -9 2262 88 3 10 chr13 37730201 37730495 -64142674 - AluSp SINE Alu -21 292 1 193 263 125 75 chr13 37731462 37731622 -64141547 - L2 LINE L2 -233 3039 2872 351 0 0 0 chr13 37731637 37731676 -64141493 + (TG)n Simple_repeat Simple_repeat 2 40 0 760 146 82 58 chr13 37731832 37732003 -64141166 + FAM SINE Alu 1 175 0 1903 142 0 17 chr13 37732614 37732910 -64140259 - AluJb SINE Alu -2 310 20 1144 158 0 0 chr13 37733853 37734043 -64139126 - L1PA16 LINE L1 -9 6157 5968 235 134 30 45 chr13 37734044 37734111 -64139058 + T-rich Low_complexity Low_complexity 2 67 0 1832 145 7 14 chr13 37734119 37734409 -64138760 - AluJo SINE Alu -24 288 1 324 109 0 0 chr13 37734409 37734457 -64138712 - L1PA16 LINE L1 -191 5974 5924 250 320 140 0 chr13 37735217 37735317 -64137852 - MIR SINE MIR -78 184 71 4663 140 1 0 chr13 37735748 37736506 -64136663 - L1PA16 LINE L1 -25 6141 5383 731 246 126 0 chr13 37737372 37737555 -64135614 + MER58A DNA MER1_type 7 212 -12 1581 190 146 19 chr13 37737601 37738012 -64135157 - MLT1C LTR MaLR -4 463 1 392 306 31 65 chr13 37738135 37738406 -64134763 - L2 LINE L2 -113 3159 2901 284 289 93 10 chr13 37738417 37738514 -64134655 - MIR SINE MIR -152 110 6 2360 68 0 7 chr13 37739139 37739434 -64133735 - AluSc SINE Alu -16 293 1 876 111 0 8 chr13 37739621 37739747 -64133422 + FLAM_C SINE Alu 12 136 -7 333 291 160 19 chr13 37741887 37742093 -64131076 - L2 LINE L2 0 3313 3079 4105 143 16 14 chr13 37742197 37742903 -64130266 - MER39 LTR ERV1 0 707 1 474 340 8 16 chr13 37743441 37743691 -64129478 - L1MC4a LINE L1 -1876 5932 5685 268 341 82 22 chr13 37744146 37744328 -64128841 + L3b LINE CR1 1354 1546 -37 432 0 0 0 chr13 37744374 37744422 -64128747 + (CA)n Simple_repeat Simple_repeat 1 48 0 446 232 312 0 chr13 37745288 37745426 -64127743 + MER5A DNA MER1_type 9 189 0 190 211 79 0 chr13 37745868 37745906 -64127263 - L3 LINE CR1 -108 1469 1429 261 354 31 0 chr13 37746030 37746126 -64127043 - L2 LINE L2 -284 2988 2890 390 342 39 7 chr13 37746195 37746350 -64126819 - MER5A DNA MER1_type -29 160 1 806 251 6 0 chr13 37746358 37746529 -64126640 - MER5B DNA MER1_type 0 178 7 296 199 385 0 chr13 37747547 37747713 -64125456 - MIR SINE MIR -13 249 20 270 206 0 0 chr13 37747793 37747861 -64125308 + CT-rich Low_complexity Low_complexity 3 70 0 4992 258 47 35 chr13 37747882 37749348 -64123821 - L1ME1 LINE L1 -22 6144 4698 1630 223 19 58 chr13 37749348 37749832 -64123337 - LTR40c LTR ERVL 0 465 1 4992 258 47 35 chr13 37749832 37750851 -64122318 - L1ME1 LINE L1 -1468 4698 3694 884 36 9 0 chr13 37750851 37750963 -64122206 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 2216 105 0 0 chr13 37750968 37751254 -64121915 - AluSx SINE Alu -26 286 1 4992 258 47 35 chr13 37751254 37751951 -64121218 - L1ME1 LINE L1 -2475 3691 2882 932 190 23 0 chr13 37751951 37752172 -64120997 + L1MA5A LINE L1 6068 6293 -4 4992 258 47 35 chr13 37752172 37752469 -64120700 - L1ME1 LINE L1 -3284 2882 2590 442 250 96 45 chr13 37752475 37752631 -64120538 + MLT1F LTR MaLR 125 288 -302 454 228 44 37 chr13 37752699 37752835 -64120334 + MLT1F LTR MaLR 372 508 -34 243 357 35 39 chr13 37753190 37753445 -64119724 + L2 LINE L2 2356 2609 -705 458 183 13 2 chr13 37753760 37753996 -64119173 + AluJo SINE Alu 1 296 -16 380 290 117 9 chr13 37754000 37754231 -64118938 + LTR33 LTR ERVL 238 493 -28 189 107 0 0 chr13 37754988 37755016 -64118153 + (T)n Simple_repeat Simple_repeat 1 28 0 2237 132 96 69 chr13 37755187 37755413 -64117756 - L1MC2 LINE L1 -10 6334 6116 785 181 0 0 chr13 37755413 37755546 -64117623 - FLAM_A SINE Alu 0 133 1 2237 132 96 69 chr13 37755546 37755828 -64117341 - L1MC2 LINE L1 -228 6116 5812 61 45 0 0 chr13 37756373 37756462 -64116707 + AT_rich Low_complexity Low_complexity 1 89 0 2062 109 44 0 chr13 37756944 37757237 -64115932 + AluSp SINE Alu 1 306 -7 385 295 51 6 chr13 37757258 37757414 -64115755 + L1MCc LINE L1 19 181 -6242 1294 183 168 89 chr13 37757497 37757979 -64115190 - MLT2B1 LTR ERVL 0 520 1 667 288 81 60 chr13 37758102 37758633 -64114536 + L1MCc LINE L1 864 1405 -5018 546 262 31 4 chr13 37758658 37758883 -64114286 + L1MCc LINE L1 1492 1722 -5219 1703 219 63 6 chr13 37758937 37759444 -64113725 + L1M4 LINE L1 4829 5364 -782 500 206 23 8 chr13 37759434 37759565 -64113604 + L1M4 LINE L1 5217 5349 -797 * 252 0 0 0 chr13 37759565 37759593 -64113576 + (TA)n Simple_repeat Simple_repeat 1 28 0 297 71 0 0 chr13 37759595 37759637 -64113532 + L1ME2 LINE L1 6100 6141 -23 341 308 94 39 chr13 37760268 37760857 -64112312 + L1MCc LINE L1 1786 2512 -790 936 197 111 57 chr13 37761068 37761439 -64111730 - L1MC4a LINE L1 -1506 6302 5912 2151 130 0 9 chr13 37761529 37761844 -64111325 + AluSx SINE Alu 1 312 0 482 333 39 35 chr13 37762167 37762422 -64110747 - L3 LINE CR1 -792 785 530 205 298 0 0 chr13 37763915 37763962 -64109207 + MIR3 SINE MIR 161 207 -1 585 282 60 9 chr13 37764078 37764294 -64108875 - MIR SINE MIR -15 247 21 314 328 30 60 chr13 37765910 37766044 -64107125 + MIR3 SINE MIR 15 144 -64 722 246 120 25 chr13 37766376 37766733 -64106436 - MER57A LTR ERV1 0 403 27 2063 154 0 0 chr13 37767696 37768008 -64105161 - AluSx SINE Alu 0 312 1 292 167 69 28 chr13 37768021 37768093 -64105076 + MIR SINE MIR 149 223 -39 217 289 169 0 chr13 37768184 37768267 -64104902 - L3 LINE CR1 -105 1472 1376 1278 251 25 48 chr13 37768806 37769245 -64103924 - LTR16A LTR ERVL -1 449 21 483 331 29 69 chr13 37769389 37769866 -64103303 - ERVL LTR ERVL -381 5383 4926 1368 327 17 12 chr13 37770147 37770919 -64102250 - ERVL LTR ERVL -943 4542 3726 2367 90 0 3 chr13 37770955 37771255 -64101914 - AluSx SINE Alu -13 299 1 1251 302 14 21 chr13 37771326 37771570 -64101599 - LTR16B LTR ERVL 0 464 223 2318 115 3 0 chr13 37771570 37771874 -64101295 + AluSq SINE Alu 1 305 -8 1251 302 14 21 chr13 37771874 37772066 -64101103 - LTR16B LTR ERVL -241 223 31 1378 296 25 21 chr13 37772172 37773244 -64099925 - ERVL LTR ERVL -2466 2530 1334 663 163 16 8 chr13 37773241 37773370 -64099799 + HERV16 LTR ERVL 732 861 -4135 * 999 287 62 19 chr13 37773365 37773689 -64099480 + HERV16 LTR ERVL 984 1321 -3675 276 291 34 11 chr13 37774206 37774374 -64098795 - L1P3 LINE L1 -344 5828 5657 2383 81 0 10 chr13 37774542 37774866 -64098303 + AluSx SINE Alu 5 312 0 1216 175 34 8 chr13 37775228 37775496 -64097673 - L1MD3 LINE L1 0 7995 7721 318 187 0 13 chr13 37775498 37775573 -64097596 - L1MEc LINE L1 -6245 151 78 23 0 0 0 chr13 37775749 37775772 -64097397 + AT_rich Low_complexity Low_complexity 1 23 0 623 268 98 18 chr13 37776099 37776435 -64096734 + L1ME3A LINE L1 3836 4198 -1948 362 21 0 0 chr13 37776456 37776503 -64096666 - MADE1 DNA Mariner -33 47 1 478 295 39 60 chr13 37776592 37776727 -64096442 + L1ME3A LINE L1 4299 4435 -1711 2332 77 0 7 chr13 37776727 37777026 -64096143 + AluSg SINE Alu 1 297 -13 478 295 39 60 chr13 37777026 37777089 -64096080 + L1ME3A LINE L1 4435 4498 -1648 2280 106 0 3 chr13 37777089 37777391 -64095778 + AluSg SINE Alu 1 301 -9 478 295 39 60 chr13 37777391 37777737 -64095432 + L1ME3A LINE L1 4498 4832 -1314 1822 152 63 14 chr13 37777829 37778177 -64094992 - MLT1A1 LTR MaLR 0 365 1 235 242 70 47 chr13 37778346 37778474 -64094695 - MLT1J2 LTR MaLR -298 152 22 614 282 14 20 chr13 37778764 37779233 -64093936 + L1ME3A LINE L1 5175 5642 -522 286 260 39 31 chr13 37779250 37779377 -64093792 + L1ME3A LINE L1 5824 5951 -219 25 0 0 0 chr13 37779633 37779658 -64093511 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 37780268 37780292 -64092877 + AT_rich Low_complexity Low_complexity 1 24 0 7210 165 147 12 chr13 37780426 37781973 -64091196 + MER52A LTR ERV1 1 1755 0 407 313 92 6 chr13 37782005 37782397 -64090772 - LTR16B LTR ERVL -2 462 1 283 328 152 11 chr13 37782421 37782600 -64090569 + MIR SINE MIR 19 216 -46 2277 54 7 0 chr13 37782607 37782924 -64090245 + AluY SINE Alu 7 325 0 265 350 50 0 chr13 37783692 37783812 -64089357 + MIR3 SINE MIR 78 203 -5 401 247 171 0 chr13 37783955 37784101 -64089068 + MIR SINE MIR 3 173 -89 323 299 96 53 chr13 37784332 37784519 -64088650 - MIR SINE MIR -22 240 46 192 125 0 0 chr13 37784769 37784801 -64088368 + (A)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr13 37786447 37786486 -64086683 + AT_rich Low_complexity Low_complexity 1 39 0 1615 165 16 85 chr13 37786567 37786750 -64086419 - MLT1B LTR MaLR -2 388 245 2215 138 0 3 chr13 37786750 37787062 -64086107 - AluSx SINE Alu -1 311 1 1615 165 16 85 chr13 37787062 37787265 -64085904 - MLT1B LTR MaLR -145 245 29 312 120 0 0 chr13 37788172 37788222 -64084947 + (T)n Simple_repeat Simple_repeat 1 50 0 710 149 117 0 chr13 37789125 37789279 -64083890 - MLT1B LTR MaLR -180 210 39 27 0 0 0 chr13 37789469 37789496 -64083673 + AT_rich Low_complexity Low_complexity 1 27 0 270 125 0 0 chr13 37789528 37789576 -64083593 - L1MA4 LINE L1 -11 6289 6242 5224 141 69 23 chr13 37789592 37791618 -64081551 - L1MA4 LINE L1 -45 6255 4125 21 0 0 0 chr13 37791923 37791944 -64081225 + AT_rich Low_complexity Low_complexity 1 21 0 2100 146 0 56 chr13 37792701 37793058 -64080111 + MER1B DNA MER1_type 1 337 0 281 289 208 13 chr13 37793906 37794055 -64079114 + MER5A DNA MER1_type 7 184 -5 212 274 164 0 chr13 37795150 37795223 -64077946 - L2 LINE L2 -2 3311 3227 263 274 29 49 chr13 37795661 37795763 -64077406 + L2 LINE L2 3163 3262 -10 297 356 90 45 chr13 37795783 37796072 -64077097 + L2 LINE L2 213 514 -2800 1364 245 102 54 chr13 37796661 37797396 -64075773 - L1MC4a LINE L1 -1779 6029 5260 779 237 15 5 chr13 37797450 37797648 -64075521 - L1MC1 LINE L1 -1 6332 6133 7974 202 40 67 chr13 37797663 37799989 -64073180 - L1MCa LINE L1 -557 6056 3902 2789 7 0 0 chr13 37799989 37800292 -64072877 + AluY SINE Alu 1 303 -8 7974 202 40 67 chr13 37800292 37802048 -64071121 - L1MCa LINE L1 -2711 3902 2100 267 271 64 39 chr13 37802080 37802283 -64070886 - L1MC4a LINE L1 -2580 3566 3359 1951 149 7 3 chr13 37802316 37802618 -64070551 + AluJb SINE Alu 3 305 -7 641 296 162 35 chr13 37802630 37803457 -64069712 - L1MC4a LINE L1 -2806 3340 2409 1705 156 11 22 chr13 37804120 37804396 -64068773 + AluJo SINE Alu 12 284 -28 248 92 15 46 chr13 37804397 37804462 -64068707 + (TAGA)n Simple_repeat Simple_repeat 1 63 0 197 366 37 0 chr13 37804771 37804853 -64068316 + L3 LINE CR1 810 894 -683 463 233 34 43 chr13 37804858 37805072 -64068097 + L1MEd LINE L1 1020 1270 -4910 405 288 89 22 chr13 37805094 37805418 -64067751 + L1MEd LINE L1 1323 1629 -861 274 222 0 32 chr13 37805646 37805709 -64067460 + MLT1L LTR MaLR 140 200 -415 335 305 103 35 chr13 37806087 37806261 -64066908 + L3 LINE CR1 972 1157 -420 601 319 22 86 chr13 37806262 37806575 -64066594 + L3 LINE CR1 1263 1555 -22 272 258 89 8 chr13 37806599 37806723 -64066446 - MER20B DNA MER1_type -1 782 649 737 244 140 25 chr13 37806774 37807053 -64066116 + MER46C DNA MER2_type 23 333 -5 23 0 0 0 chr13 37807539 37807562 -64065607 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 37808653 37808676 -64064493 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1822 183 31 28 chr13 37808844 37809204 -64063965 - MER47A DNA MER2_type 0 366 6 3208 143 45 22 chr13 37809298 37809900 -64063269 + L1MB7 LINE L1 5560 6175 -9 390 254 34 59 chr13 37809901 37810019 -64063150 - MER91A DNA MER1_type -40 156 42 2373 37 3 0 chr13 37810383 37810677 -64062492 + L1PA7 LINE L1 5857 6151 -3 219 120 60 20 chr13 37810992 37811042 -64062127 + (TTAAA)n Simple_repeat Simple_repeat 2 53 0 22 35 0 0 chr13 37811526 37811555 -64061614 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 37812014 37812043 -64061126 + AT_rich Low_complexity Low_complexity 1 29 0 1616 204 66 63 chr13 37812045 37812358 -64060811 - L1MC5 LINE L1 -48 7913 7596 2174 103 0 7 chr13 37812358 37812660 -64060509 - AluSg SINE Alu -10 300 1 1616 204 66 63 chr13 37812660 37812905 -64060264 - L1MC5 LINE L1 -365 7596 7353 2556 56 0 0 chr13 37813572 37813877 -64059292 - AluY SINE Alu -6 305 1 1940 124 17 10 chr13 37814952 37815242 -64057927 - AluSx SINE Alu -20 292 1 38 51 0 0 chr13 37815321 37815380 -64057789 + AT_rich Low_complexity Low_complexity 1 59 0 3573 147 5 7 chr13 37815470 37816042 -64057127 + L1PA16 LINE L1 5574 6144 -22 263 295 171 39 chr13 37816435 37816564 -64056605 + L2 LINE L2 3168 3313 0 254 283 9 88 chr13 37816835 37816948 -64056221 - MIR SINE MIR -124 138 35 21 36 0 0 chr13 37817168 37817196 -64055973 + AT_rich Low_complexity Low_complexity 1 28 0 1695 183 58 26 chr13 37817475 37817853 -64055316 - MLT1B LTR MaLR 0 390 1 1123 193 51 35 chr13 37818007 37818261 -64054908 - L1MB4 LINE L1 0 6180 5923 441 282 92 11 chr13 37818281 37818455 -64054714 - MIR3 SINE MIR -5 203 16 1352 171 18 73 chr13 37818506 37818762 -64054407 + MER33 DNA MER1_type 4 238 -2347 1966 125 4 0 chr13 37818762 37819041 -64054128 - AluSx SINE Alu -32 280 1 1352 171 18 73 chr13 37819041 37819124 -64054045 + MER33 DNA MER1_type 238 324 0 396 0 0 0 chr13 37819600 37819644 -64053525 + (ATG)n Simple_repeat Simple_repeat 2 45 0 721 273 53 24 chr13 37819650 37819859 -64053310 - MIR SINE MIR -9 253 39 320 324 38 0 chr13 37819935 37820040 -64053129 + MIR SINE MIR 148 256 -6 33 25 0 0 chr13 37823368 37823408 -64049761 + AT_rich Low_complexity Low_complexity 1 40 0 353 212 0 0 chr13 37824027 37824093 -64049076 + MER91 DNA MER1_type 1 66 -74 2027 132 0 0 chr13 37824424 37824712 -64048457 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr13 37824841 37824863 -64048306 + AT_rich Low_complexity Low_complexity 1 22 0 522 309 98 20 chr13 37825184 37825582 -64047587 + L1ME LINE L1 5320 5748 -373 2334 53 0 72 chr13 37830177 37830497 -64042672 - AluSc SINE Alu -12 297 1 2612 32 0 13 chr13 37830740 37831049 -64042120 - AluY SINE Alu -5 306 2 1002 81 0 0 chr13 37831989 37832113 -64041056 - AluY SINE Alu -187 124 1 24 0 0 0 chr13 37832161 37832185 -64040984 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 37832347 37832367 -64040802 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr13 37834297 37834318 -64038851 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 37835243 37835274 -64037895 + AT_rich Low_complexity Low_complexity 1 31 0 3845 186 63 19 chr13 37836546 37837746 -64035423 - L1MB8 LINE L1 -23 6155 4920 303 261 35 63 chr13 37837998 37838129 -64035040 + MER5A DNA MER1_type 37 149 -29 1121 206 188 37 chr13 37838145 37838523 -64034646 + MER63B DNA MER1_type 1 435 -1 2009 119 0 4 chr13 37839090 37839368 -64033801 - AluSg SINE Alu -23 287 11 202 211 0 0 chr13 37840102 37840140 -64033029 - MER5B DNA MER1_type -140 38 1 1043 175 53 19 chr13 37840162 37840425 -64032744 + MER33 DNA MER1_type 53 324 0 609 169 42 0 chr13 37840893 37841011 -64032158 - L1MB3 LINE L1 -1 6182 6060 515 212 10 0 chr13 37842413 37842512 -64030657 - AluJb SINE Alu -19 293 194 1057 168 6 11 chr13 37842512 37842691 -64030478 + AluJo SINE Alu 16 193 -119 698 247 60 22 chr13 37842974 37843156 -64030013 + MER58A DNA MER1_type 1 189 -35 223 247 71 59 chr13 37843211 37843296 -64029873 - L3 LINE CR1 -119 1458 1373 24 0 0 0 chr13 37843410 37843434 -64029735 + AT_rich Low_complexity Low_complexity 1 24 0 451 349 176 14 chr13 37843714 37844378 -64028791 + L2 LINE L2 1387 2158 -1156 1483 206 109 38 chr13 37844678 37845155 -64028014 - Charlie1b DNA MER1_type -11 512 2 195 311 97 80 chr13 37845329 37845628 -64027541 + L2 LINE L2 2398 2701 -613 1929 258 64 47 chr13 37845637 37846544 -64026625 - L1ME3A LINE L1 -8 6162 5203 229 373 44 32 chr13 37846544 37846702 -64026467 + L2 LINE L2 2687 2846 -468 279 272 134 40 chr13 37847009 37847211 -64025958 + L1MC/D LINE L1 5266 5486 -678 292 330 55 32 chr13 37847220 37847532 -64025637 + L1MC/D LINE L1 5538 5856 -1952 344 290 13 113 chr13 37847909 37847980 -64025189 - L1ME LINE L1 -425 5696 5619 1468 69 0 86 chr13 37847980 37848212 -64024957 + L1PA8 LINE L1 5955 6166 -6 344 290 13 113 chr13 37848212 37848378 -64024791 - L1ME LINE L1 -502 5619 5483 2274 98 0 0 chr13 37848943 37849250 -64023919 - AluSc SINE Alu -2 307 1 275 307 145 17 chr13 37851087 37851266 -64021903 - MIR SINE MIR -41 221 20 26 0 0 27 chr13 37851454 37851471 -64021698 + AT_rich Low_complexity Low_complexity 1 17 -19 1328 195 57 30 chr13 37851471 37851769 -64021400 - AluJo SINE Alu -5 307 2 26 0 0 27 chr13 37851769 37851788 -64021381 + AT_rich Low_complexity Low_complexity 17 36 0 24 0 0 0 chr13 37852721 37852745 -64020424 + AT_rich Low_complexity Low_complexity 1 24 0 186 393 56 0 chr13 37853021 37853128 -64020041 + L2 LINE L2 2682 2794 -520 213 274 53 88 chr13 37853359 37853472 -64019697 + L2 LINE L2 3185 3293 -20 700 292 70 59 chr13 37854807 37855249 -64017920 - MLT1J2 LTR MaLR -8 410 1 234 0 0 0 chr13 37856003 37856029 -64017140 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1332 92 34 84 chr13 37856034 37856273 -64016896 - LTR8 LTR ERV1 -104 587 361 2019 104 35 10 chr13 37856283 37856572 -64016597 - AluSg SINE Alu -14 296 1 1572 174 4 0 chr13 37856641 37856900 -64016269 + AluJb SINE Alu 47 306 -6 331 361 57 5 chr13 37857250 37857444 -64015725 + HAL1b LINE L1 361 564 -784 285 255 142 0 chr13 37857525 37857631 -64015538 + L1M4 LINE L1 4981 5101 -1045 1934 114 0 18 chr13 37857835 37858108 -64015061 - AluSx SINE Alu -21 291 24 189 0 0 0 chr13 37858222 37858243 -64014926 + (CA)n Simple_repeat Simple_repeat 2 22 0 1213 207 22 7 chr13 37858345 37858620 -64014549 - L1 LINE L1 -946 5200 4922 315 209 15 0 chr13 37858663 37858730 -64014439 + L1ME4a LINE L1 5982 6049 -72 5020 149 21 26 chr13 37859465 37860482 -64012687 - L1MB2 LINE L1 -2 6169 5163 31 0 0 0 chr13 37860898 37860929 -64012240 + AT_rich Low_complexity Low_complexity 1 31 0 11586 131 26 27 chr13 37861140 37863077 -64010092 + Tigger1 DNA MER2_type 30 1964 -454 273 159 175 0 chr13 37863099 37863162 -64010007 - AluS SINE Alu -6 296 223 1277 206 18 25 chr13 37863163 37863439 -64009730 - AluJb SINE Alu -38 274 1 2543 164 31 9 chr13 37863439 37863733 -64009436 + Tigger1 DNA MER2_type 1952 2261 -157 2257 93 0 13 chr13 37863733 37864034 -64009135 - AluY SINE Alu -14 297 1 2543 164 31 9 chr13 37864034 37864196 -64008973 + Tigger1 DNA MER2_type 2261 2418 0 180 77 0 0 chr13 37864493 37864519 -64008650 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 37865349 37865370 -64007799 + AT_rich Low_complexity Low_complexity 1 21 0 559 165 0 0 chr13 37865415 37865500 -64007669 - Tigger7 DNA MER2_type -7 2580 2496 * 1936 179 104 43 chr13 37865494 37865964 -64007205 - Tigger7 DNA MER2_type -1961 526 28 886 134 56 0 chr13 37866529 37866675 -64006494 - MSTB LTR MaLR 0 415 273 2176 144 82 12 chr13 37868006 37868410 -64004759 - Tigger2a DNA MER2_type 0 434 3 263 340 217 5 chr13 37868758 37869061 -64004108 + L2 LINE L2 2719 3080 -233 1351 215 215 34 chr13 37869330 37869767 -64003402 - MLT2B3 LTR ERVL 0 554 25 812 78 93 16 chr13 37869767 37869896 -64003273 + MER85 DNA T2_type 1 139 0 1351 215 215 34 chr13 37869896 37869927 -64003242 - MLT2B3 LTR ERVL -529 25 1 402 265 51 0 chr13 37869933 37870031 -64003138 + MIR SINE MIR 160 262 0 380 261 0 0 chr13 37870063 37870151 -64003018 + L2 LINE L2 3225 3312 -1 1660 162 18 4 chr13 37871457 37871729 -64001440 + AluJo SINE Alu 7 282 -30 1194 163 0 32 chr13 37872253 37872474 -64000695 + MER20 DNA MER1_type 2 215 -4 2133 109 0 0 chr13 37873996 37874306 -63998863 + AluY SINE Alu 1 310 0 217 279 16 0 chr13 37875995 37876056 -63997113 + MIR3 SINE MIR 113 174 -34 616 218 0 49 chr13 37876099 37876241 -63996928 - FLAM_A SINE Alu -7 135 1 237 202 81 10 chr13 37877955 37878054 -63995115 - L1M4 LINE L1 -1445 4701 4596 362 290 84 9 chr13 37878370 37878584 -63994585 - L1MC4a LINE L1 -1904 5887 5658 2626 39 0 3 chr13 37878826 37879138 -63994031 + AluY SINE Alu 1 311 0 233 321 36 27 chr13 37879163 37879275 -63993894 - L1MC4a LINE L1 -2058 4071 3959 378 249 98 70 chr13 37879277 37879646 -63993523 - L1MC4a LINE L1 -3342 2787 2409 296 80 300 0 chr13 37879680 37879730 -63993439 + MER46A DNA MER2_type 1 65 -171 245 226 16 32 chr13 37879682 37879744 -63993425 - MER46A DNA MER2_type -94 142 82 * 954 136 130 6 chr13 37879784 37879953 -63993216 + MER46A DNA MER2_type 47 236 0 240 176 0 0 chr13 37879980 37880031 -63993138 - L1MC4a LINE L1 -3820 2309 2259 441 261 76 0 chr13 37880074 37880231 -63992938 - L1MC4a LINE L1 -4993 1126 958 21 0 0 0 chr13 37880298 37880319 -63992850 + AT_rich Low_complexity Low_complexity 1 21 0 2442 31 0 7 chr13 37880483 37880813 -63992356 - L1PA3 LINE L1 0 6155 5865 4173 13 0 0 chr13 37880813 37881285 -63991884 + L1PA3 LINE L1 5399 5870 -285 370 262 90 8 chr13 37881278 37881400 -63991769 - L1MC4a LINE L1 -5398 721 590 * 2240 229 87 13 chr13 37881461 37882084 -63991085 - L1MD2 LINE L1 0 6359 5691 217 359 0 0 chr13 37883002 37883066 -63990103 - MER5B DNA MER1_type -30 148 85 495 304 52 26 chr13 37883908 37884138 -63989031 - MIR SINE MIR -6 256 21 397 332 130 60 chr13 37884217 37884648 -63988521 - L2 LINE L2 -8 3264 2804 2213 147 18 23 chr13 37936515 37936904 -63936265 + MLT1B LTR MaLR 4 390 0 404 65 52 0 chr13 37937343 37937420 -63935749 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 243 330 48 10 chr13 37937567 37937670 -63935499 + MIR SINE MIR 47 153 -55 1838 207 33 5 chr13 37938273 37938572 -63934597 - MER93a LTR ERV1 0 402 88 2295 108 7 3 chr13 37938572 37938879 -63934290 + AluSq SINE Alu 1 308 -5 1838 207 33 5 chr13 37938879 37938970 -63934199 - MER93a LTR ERV1 -314 88 1 27 62 0 0 chr13 37939402 37939450 -63933719 + AT_rich Low_complexity Low_complexity 1 48 0 985 203 0 0 chr13 37940212 37940375 -63932794 + FRAM SINE Alu 1 163 -3 1903 221 37 69 chr13 37941662 37941797 -63931372 + MER92B LTR ERV1 64 202 -434 1935 199 15 35 chr13 37941797 37942199 -63930970 - MSTD LTR MaLR 0 396 3 1903 221 37 69 chr13 37942199 37942655 -63930514 + MER92B LTR ERV1 202 636 0 426 304 214 23 chr13 37942989 37943246 -63929923 + MLT1J2 LTR MaLR 143 448 -2 1144 251 156 26 chr13 37943285 37943748 -63929421 - LTR67 LTR ERVL -34 523 1 325 258 152 13 chr13 37943862 37944013 -63929156 - MIR SINE MIR -13 249 78 1663 253 52 55 chr13 37944273 37944913 -63928256 - L1MC5 LINE L1 -628 7333 6696 1341 175 133 51 chr13 37944992 37945420 -63927749 - MER31B LTR ERV1 0 466 4 2227 125 0 3 chr13 37945530 37945843 -63927326 + AluSx SINE Alu 1 312 0 2548 155 7 12 chr13 37946208 37946620 -63926549 - MSTA LTR MaLR 0 428 19 2080 123 7 13 chr13 37946667 37946969 -63926200 - AluSq SINE Alu -13 300 1 489 336 16 20 chr13 37947332 37947585 -63925584 - HAL1b LINE L1 -728 620 369 1114 199 100 64 chr13 37949303 37949664 -63923505 + MLT1A2 LTR MaLR 1 374 0 391 200 42 0 chr13 37950746 37950841 -63922328 + L2 LINE L2 1319 1417 -1897 381 58 0 0 chr13 37951619 37951671 -63921498 + (TC)n Simple_repeat Simple_repeat 1 52 0 603 169 308 17 chr13 37952419 37952601 -63920568 - L1MD3 LINE L1 -9 7986 6137 321 286 0 0 chr13 37952604 37952751 -63920418 + (TG)n Simple_repeat Simple_repeat 2 148 0 242 206 0 0 chr13 37953923 37953986 -63919183 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 273 273 0 80 chr13 37954098 37954186 -63918983 - MIR SINE MIR -110 98 18 1795 151 7 7 chr13 37955066 37955344 -63917825 + AluJo SINE Alu 1 278 -34 654 118 62 19 chr13 37955360 37955521 -63917648 + Charlie5 DNA MER1_type 2391 2558 -54 2023 217 58 76 chr13 37955563 37956264 -63916905 + MER20B DNA MER1_type 3 691 -92 411 21 0 0 chr13 37956314 37956362 -63916807 + (TA)n Simple_repeat Simple_repeat 2 49 0 252 304 103 73 chr13 37956462 37956735 -63916434 + L2 LINE L2 2992 3272 0 342 318 121 14 chr13 37956842 37957065 -63916104 + MIR SINE MIR 10 256 -6 1651 196 88 37 chr13 37957068 37957445 -63915724 - MLT2B1 LTR ERVL 0 520 125 904 205 67 5 chr13 37958109 37958304 -63914865 + MER58A DNA MER1_type 13 219 -5 1320 166 51 75 chr13 37958628 37958923 -63914246 - AluJb SINE Alu -24 288 1 1544 177 0 4 chr13 37959396 37959654 -63913515 + AluJo SINE Alu 1 253 -59 400 220 100 10 chr13 37960087 37960187 -63912982 - MER91C DNA MER1_type -31 109 1 285 98 0 0 chr13 37960259 37960300 -63912869 + (TA)n Simple_repeat Simple_repeat 2 42 0 1000 176 11 5 chr13 37960730 37960917 -63912252 - MER5A DNA MER1_type -1 188 1 454 288 36 14 chr13 37960921 37961060 -63912109 + MIR SINE MIR 6 147 -115 282 307 149 18 chr13 37961402 37961516 -63911653 - MIR SINE MIR -48 214 86 2109 95 0 48 chr13 37961819 37962135 -63911034 - AluSx SINE Alu -6 306 6 21 36 0 0 chr13 37962142 37962170 -63910999 + AT_rich Low_complexity Low_complexity 1 28 0 1583 186 6 13 chr13 37962229 37962540 -63910629 - AluJb SINE Alu -3 309 1 1637 173 0 23 chr13 37962569 37962870 -63910299 - AluJo SINE Alu -18 294 1 2344 68 0 0 chr13 37964075 37964371 -63908798 - AluY SINE Alu -15 296 1 17976 123 16 8 chr13 37964742 37967315 -63905854 + Tigger4(Zombi) DNA MER2_type 1 2598 -133 2020 118 0 13 chr13 37967315 37967619 -63905550 - AluSx SINE Alu -12 300 1 17976 123 16 8 chr13 37967619 37967755 -63905414 + Tigger4(Zombi) DNA MER2_type 2598 2731 0 908 285 16 16 chr13 37967755 37967998 -63905171 - MIR SINE MIR -8 254 9 834 190 49 12 chr13 37967998 37968161 -63905008 - MER5A DNA MER1_type 0 189 21 346 221 74 0 chr13 37968177 37968272 -63904897 + MER69 DNA AcHobo 27 128 -2398 1462 146 16 4 chr13 37968293 37968539 -63904630 + AluJo SINE Alu 25 273 -39 352 51 39 26 chr13 37968541 37968619 -63904550 + (TA)n Simple_repeat Simple_repeat 2 80 0 311 226 16 0 chr13 37968637 37968699 -63904470 + MER69 DNA AcHobo 2461 2523 -3 733 162 81 25 chr13 37969398 37969596 -63903573 - Charlie5 DNA MER1_type -51 2561 2353 1028 188 10 10 chr13 37969653 37969845 -63903324 - MER52A LTR ERV1 -1203 552 361 * 1270 142 109 29 chr13 37969813 37970052 -63903117 - MER52A LTR ERV1 -1497 258 1 196 351 75 11 chr13 37970963 37971057 -63902112 + MIR3 SINE MIR 12 111 -97 * 253 281 110 0 chr13 37971045 37971127 -63902042 + MIR SINE MIR 123 213 -49 621 238 46 11 chr13 37971129 37971206 -63901963 + L1ME4a LINE L1 5128 5201 -945 1800 140 19 7 chr13 37971206 37971514 -63901655 + AluSx SINE Alu 1 312 0 621 238 46 11 chr13 37971514 37971697 -63901472 + L1ME4a LINE L1 5201 5397 -749 2734 149 23 13 chr13 37971752 37972223 -63900946 - L1PA16 LINE L1 -8 6158 5683 715 187 58 6 chr13 37972232 37972403 -63900766 - Charlie5 DNA MER1_type -2409 203 24 467 305 47 26 chr13 37972627 37972817 -63900352 + L2 LINE L2 3120 3313 0 291 179 0 0 chr13 37973408 37973475 -63899694 + CT-rich Low_complexity Low_complexity 2 68 0 451 239 128 0 chr13 37974037 37974146 -63899023 + MER45 DNA AcHobo 1 123 -55 563 259 7 34 chr13 37975312 37975459 -63897710 - MER5A DNA MER1_type -3 186 44 794 191 30 50 chr13 37975934 37976133 -63897036 - L1MB3 LINE L1 0 6183 5989 1227 216 34 40 chr13 37976134 37976458 -63896711 - L1MB3 LINE L1 -296 5887 5566 284 269 11 32 chr13 37976624 37976717 -63896452 - MIR3 SINE MIR -14 194 104 512 318 108 10 chr13 37976731 37977027 -63896142 + L2 LINE L2 2988 3312 -1 1799 118 0 0 chr13 37978222 37978476 -63894693 + AluSx SINE Alu 39 292 -20 1299 159 61 81 chr13 37978888 37979217 -63893952 + AluJo SINE Alu 1 323 0 303 294 132 64 chr13 37979217 37979421 -63893748 + L1ME4a LINE L1 5609 5826 -295 230 200 20 0 chr13 37979486 37979536 -63893633 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 392 153 68 51 chr13 37979537 37979655 -63893514 + L1ME4a LINE L1 5961 6080 -41 763 146 23 15 chr13 37979847 37979977 -63893192 - FLAM_C SINE Alu 0 133 3 204 258 79 11 chr13 37979992 37980081 -63893088 - L2 LINE L2 -1612 1702 1608 241 258 98 36 chr13 37980401 37980595 -63892574 + L2 LINE L2 2855 3060 -212 332 312 102 37 chr13 37980843 37981058 -63892111 - MIR SINE MIR -6 256 28 219 288 68 51 chr13 37981742 37981860 -63891309 - L2 LINE L2 -1 3271 3152 574 172 0 0 chr13 37981863 37981962 -63891207 + MER5A DNA MER1_type 15 113 -76 393 225 14 133 chr13 37982088 37982306 -63890863 + L2 LINE L2 3035 3226 -87 2067 110 0 0 chr13 37982422 37982730 -63890439 + AluSx SINE Alu 1 308 0 365 272 88 22 chr13 37984118 37984254 -63888915 - MER20B DNA MER1_type -604 179 35 1534 208 23 32 chr13 37984589 37984935 -63888234 + MER61A LTR ERV1 1 343 0 1780 83 14 54 chr13 37986730 37987007 -63886162 + AluY SINE Alu 40 305 -6 181 374 55 23 chr13 37987020 37987239 -63885930 + L2 LINE L2 2652 2877 -437 197 307 54 108 chr13 37987295 37987461 -63885708 + L2 LINE L2 2966 3122 -150 265 316 46 64 chr13 37987493 37987679 -63885490 - MER5A DNA MER1_type -1 177 4 256 297 79 10 chr13 37987682 37987783 -63885386 + L2 LINE L2 3148 3255 -17 699 155 10 10 chr13 37987783 37987977 -63885192 + GA-rich Low_complexity Low_complexity 1 194 0 211 293 13 40 chr13 37989792 37989867 -63883302 + L2 LINE L2 3193 3265 -7 1982 171 28 6 chr13 37991420 37991777 -63881392 + MLT1A1 LTR MaLR 1 365 0 207 159 0 43 chr13 37992277 37992346 -63880823 + CT-rich Low_complexity Low_complexity 3 68 0 449 288 89 0 chr13 37992412 37992558 -63880611 - MIR SINE MIR -1 261 103 509 236 45 0 chr13 37992724 37992834 -63880335 + MIR SINE MIR 72 186 -76 330 268 122 61 chr13 37993138 37993302 -63879867 - MIR SINE MIR -44 218 45 195 42 0 0 chr13 37993681 37993705 -63879464 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2358 39 0 0 chr13 37994034 37994315 -63878854 + AluY SINE Alu 21 301 -10 216 227 91 30 chr13 37994590 37994656 -63878513 - L2 LINE L2 0 3272 3203 189 233 256 0 chr13 37995479 37995565 -63877604 + L2 LINE L2 3161 3268 -4 327 310 169 0 chr13 37995931 37996115 -63877054 - Charlie8 DNA MER1_type -2142 275 61 1714 143 14 7 chr13 37996136 37996448 -63876721 + AluJb SINE Alu 1 314 0 420 246 69 91 chr13 37996784 37996959 -63876210 + MIR SINE MIR 21 191 -71 2280 192 53 13 chr13 37997843 37998083 -63875086 - L1MB5 LINE L1 -13 6161 5932 2584 133 35 41 chr13 37998083 37998464 -63874705 + MSTB2 LTR MaLR 1 380 -77 1765 125 54 4 chr13 37998464 37998743 -63874426 - AluSx SINE Alu 0 312 20 2584 133 35 41 chr13 37998743 37998821 -63874348 + MSTB2 LTR MaLR 380 457 0 2280 192 53 13 chr13 37998821 37998929 -63874240 - L1MB5 LINE L1 -242 5932 5830 228 35 0 0 chr13 37998929 37998958 -63874211 + (TG)n Simple_repeat Simple_repeat 1 29 0 2280 192 53 13 chr13 37998958 37999062 -63874107 - L1MB5 LINE L1 -344 5830 5690 226 245 0 0 chr13 37999985 38000038 -63873131 - L2 LINE L2 0 3313 3261 22 0 0 0 chr13 38000222 38000244 -63872925 + AT_rich Low_complexity Low_complexity 1 22 0 616 231 0 27 chr13 38000545 38000692 -63872477 + LTR16C LTR ERVL 340 482 -9 1858 212 21 24 chr13 38000693 38001118 -63872051 + MLT1C LTR MaLR 1 424 -43 418 289 96 12 chr13 38002560 38002726 -63870443 + MIR SINE MIR 77 256 -6 548 125 11 0 chr13 38003027 38003115 -63870054 + L1MB3 LINE L1 6088 6176 -7 5936 182 24 11 chr13 38003651 38004872 -63868297 - L1 LINE L1 -2606 3540 2304 280 292 56 56 chr13 38005378 38005539 -63867630 - MIR SINE MIR -52 210 50 558 217 31 0 chr13 38006023 38006152 -63867017 + MIR SINE MIR 60 192 -70 350 263 73 22 chr13 38006366 38006503 -63866666 + MER46C DNA MER2_type 80 223 -115 * 1239 158 111 88 chr13 38006481 38006598 -63866571 + MLT2C1 LTR ERVL 30 143 -377 1590 140 163 35 chr13 38006598 38006862 -63866307 - MLT1B LTR MaLR 0 390 71 2140 110 7 0 chr13 38006862 38007161 -63866008 + AluSg SINE Alu 2 302 -8 1590 140 163 35 chr13 38007161 38007239 -63865930 - MLT1B LTR MaLR -319 71 4 1239 158 111 88 chr13 38007239 38007398 -63865771 + MLT2C1 LTR ERVL 143 297 -223 2170 103 10 0 chr13 38007398 38007699 -63865470 - AluSg SINE Alu -6 304 1 1239 158 111 88 chr13 38007699 38007753 -63865416 + MLT2C1 LTR ERVL 297 485 -35 239 250 28 90 chr13 38007895 38008039 -63865130 - MIR SINE MIR -65 197 63 1848 179 108 56 chr13 38008696 38009217 -63863952 + LTR10A LTR ERV1 1 548 -61 1106 187 9 0 chr13 38009397 38009616 -63863553 + L1 LINE L1 2651 2871 -3275 696 250 28 14 chr13 38009726 38009938 -63863231 + L1ME3A LINE L1 5692 5906 -264 2104 132 3 13 chr13 38010226 38010537 -63862632 + AluSx SINE Alu 1 308 -4 572 233 39 73 chr13 38010561 38010767 -63862402 + MER112 DNA MER1_type 62 260 0 1570 190 14 17 chr13 38011407 38011702 -63861467 - AluJo SINE Alu -18 294 1 351 113 0 0 chr13 38012899 38012952 -63860217 + (TG)n Simple_repeat Simple_repeat 2 54 0 3988 52 19 0 chr13 38013474 38013955 -63859214 + LTR2B LTR ERV1 1 490 0 362 206 15 29 chr13 38014944 38015080 -63858089 + GA-rich Low_complexity Low_complexity 4 137 0 229 278 0 0 chr13 38016381 38016435 -63856734 + (CA)n Simple_repeat Simple_repeat 2 55 0 2177 83 0 0 chr13 38016877 38017142 -63856027 + AluSg SINE Alu 35 299 -11 234 260 130 8 chr13 38017155 38017278 -63855891 - L1ME4a LINE L1 -3 6118 5981 2583 144 8 8 chr13 38017380 38017782 -63855387 - MER57A LTR ERV1 0 403 2 902 295 29 9 chr13 38017863 38018178 -63854991 - L1ME4a LINE L1 -298 5823 5503 2166 139 34 65 chr13 38019016 38019434 -63853735 + MLT2D LTR ERVL 3 407 -7 321 328 96 0 chr13 38019935 38020112 -63853057 + L1ME LINE L1 5556 5749 -372 266 73 24 0 chr13 38020461 38020502 -63852667 + (GGA)n Simple_repeat Simple_repeat 1 42 0 29 70 0 0 chr13 38021390 38021447 -63851722 + AT_rich Low_complexity Low_complexity 1 57 0 2759 201 50 76 chr13 38021661 38022477 -63850692 - L1MC5 LINE L1 -494 7467 6672 1750 128 6 62 chr13 38022477 38022797 -63850372 - AluJb SINE Alu -8 304 3 2759 201 50 76 chr13 38022797 38022834 -63850335 - L1MC5 LINE L1 -1289 6672 6636 301 159 14 14 chr13 38022851 38022920 -63850249 + CT-rich Low_complexity Low_complexity 6 74 0 1754 293 25 6 chr13 38023100 38023618 -63849551 - MLT1F1 LTR MaLR -26 541 14 520 227 45 148 chr13 38023622 38023952 -63849217 - MLT1F1-int LTR MaLR -2 1369 1074 289 111 22 0 chr13 38023960 38024005 -63849164 + AluSg/x SINE Alu 184 229 -71 2399 77 31 6 chr13 38024371 38024696 -63848473 - L1PA8 LINE L1 -5 6167 5835 304 281 141 0 chr13 38024785 38024913 -63848256 - MLT1F1-int LTR MaLR -1221 150 5 1841 222 93 38 chr13 38024916 38025412 -63847757 - MLT1F1 LTR MaLR 0 567 45 618 284 126 13 chr13 38025653 38026107 -63847062 - L1MC4a LINE L1 -1640 6168 5664 572 216 34 110 chr13 38026099 38026349 -63846820 - L1ME4a LINE L1 -280 5841 5620 * 2081 137 7 0 chr13 38026349 38026642 -63846527 + AluSx SINE Alu 1 295 -17 572 216 34 110 chr13 38026642 38026719 -63846450 - L1ME4a LINE L1 -501 5620 5539 474 253 52 105 chr13 38026753 38026982 -63846187 + MIR SINE MIR 46 262 0 211 189 45 36 chr13 38027120 38027231 -63845938 + (TTATA)n Simple_repeat Simple_repeat 3 114 0 362 167 0 14 chr13 38027345 38027417 -63845752 - L1MA10 LINE L1 -2 6332 6262 283 202 125 87 chr13 38027418 38027522 -63845647 - L1M3c LINE L1 -6033 108 1 2050 246 63 35 chr13 38027855 38027943 -63845226 - L1ME3A LINE L1 -11 6159 6075 2377 186 31 7 chr13 38027943 38028399 -63844770 - MLT1C LTR MaLR 0 467 1 2050 246 63 35 chr13 38028399 38028964 -63844205 - L1ME3A LINE L1 -95 6075 5488 180 0 0 0 chr13 38028996 38029016 -63844153 + (ATG)n Simple_repeat Simple_repeat 2 21 0 318 316 85 11 chr13 38029046 38029223 -63843946 - MIR SINE MIR -36 226 37 214 250 15 15 chr13 38029769 38029837 -63843332 - MIR SINE MIR -111 151 84 2881 213 18 3 chr13 38029860 38030486 -63842683 + L1MC1 LINE L1 3798 4432 -1714 318 180 34 67 chr13 38030487 38030576 -63842593 + L1MC1 LINE L1 4901 4986 -1160 3309 163 20 18 chr13 38030576 38031179 -63841990 + L1MC1 LINE L1 5727 6330 -3 195 206 16 79 chr13 38031339 38031402 -63841767 - L2 LINE L2 -78 3235 3177 405 0 0 0 chr13 38034116 38034161 -63839008 + (TG)n Simple_repeat Simple_repeat 1 45 0 191 369 18 0 chr13 38035427 38035538 -63837631 + MIR SINE MIR 33 145 -63 288 111 0 0 chr13 38037420 38037465 -63835704 + (CA)n Simple_repeat Simple_repeat 2 46 0 2462 88 0 0 chr13 38038691 38038999 -63834170 + AluSq SINE Alu 1 308 -5 12172 131 50 9 chr13 38039283 38041218 -63831951 - Ricksha_c DNA DNA -25 2021 8 243 0 0 0 chr13 38042019 38042046 -63831123 + (CA)n Simple_repeat Simple_repeat 2 28 0 224 280 224 84 chr13 38042296 38042433 -63830736 + MIR SINE MIR 18 134 -128 1817 147 7 20 chr13 38042433 38042725 -63830444 + AluJo SINE Alu 1 288 -24 224 280 224 84 chr13 38042725 38042801 -63830368 + MIR SINE MIR 134 261 -1 207 293 0 24 chr13 38043028 38043110 -63830059 - MIR SINE MIR -82 126 47 291 269 177 14 chr13 38044076 38044217 -63828952 - MIR SINE MIR -36 226 63 423 196 93 0 chr13 38044497 38044594 -63828575 + LTR16C LTR ERVL 385 490 -1 622 224 101 22 chr13 38044613 38044792 -63828377 - MIR SINE MIR -5 257 65 2039 131 3 0 chr13 38044815 38045105 -63828064 - AluSx SINE Alu -21 291 1 2383 92 0 0 chr13 38045225 38045530 -63827639 - AluY SINE Alu -6 305 1 200 233 0 0 chr13 38045827 38045870 -63827299 + A-rich Low_complexity Low_complexity 1 43 0 263 320 107 0 chr13 38046840 38046943 -63826226 + MIR SINE MIR 37 150 -58 366 329 99 9 chr13 38047215 38047428 -63825741 + MIR SINE MIR 25 256 -6 685 160 0 53 chr13 38047446 38047634 -63825535 + CT-rich Low_complexity Low_complexity 3 180 0 2269 86 40 20 chr13 38048289 38048639 -63824530 - L1PA11 LINE L1 -1 6173 5817 1529 117 0 0 chr13 38048645 38048851 -63824318 - L1PA12 LINE L1 -298 5870 5665 225 253 13 40 chr13 38049036 38049111 -63824058 + L2 LINE L2 3200 3272 0 802 234 82 20 chr13 38049386 38049630 -63823539 + MIR SINE MIR 4 262 0 762 183 62 52 chr13 38050112 38050316 -63822853 - MIR SINE MIR -11 251 41 180 176 0 0 chr13 38051045 38051079 -63822090 + T-rich Low_complexity Low_complexity 1 34 0 305 254 43 87 chr13 38051276 38051461 -63821708 + MIR SINE MIR 35 211 -51 315 71 0 0 chr13 38051572 38051614 -63821555 + (TG)n Simple_repeat Simple_repeat 2 43 0 3225 184 52 6 chr13 38052215 38052904 -63820265 + L1MB4 LINE L1 5460 6180 0 186 221 232 11 chr13 38053212 38053307 -63819862 + L2 LINE L2 3180 3295 -18 529 282 25 49 chr13 38053350 38053595 -63819574 + L2 LINE L2 3075 3313 0 2129 117 0 0 chr13 38053840 38054184 -63818985 - AluSx SINE Alu 0 344 1 1273 284 93 21 chr13 38054545 38055146 -63818023 + MER115 DNA AcHobo 5 693 0 732 169 19 106 chr13 38055352 38055468 -63817701 + L1ME3 LINE L1 5945 6037 -125 1945 137 0 20 chr13 38055468 38055760 -63817409 - AluJo SINE Alu -26 286 1 732 169 19 106 chr13 38055760 38055850 -63817319 + L1ME3 LINE L1 6037 6133 -29 294 311 8 8 chr13 38055881 38056003 -63817166 + MIR SINE MIR 67 188 -74 192 250 19 0 chr13 38056657 38056709 -63816460 - L2 LINE L2 0 3272 3220 483 256 58 7 chr13 38056903 38057040 -63816129 - MIR SINE MIR -54 208 65 655 161 188 7 chr13 38057043 38057192 -63815977 - MER45A DNA AcHobo -2 176 1 530 287 92 35 chr13 38057586 38057942 -63815227 - MLT1J LTR MaLR -2 509 209 182 256 0 0 chr13 38058344 38058383 -63814786 + L2 LINE L2 3137 3175 -97 1143 112 0 0 chr13 38058563 38058800 -63814369 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 459 325 34 32 chr13 38058802 38059114 -63814055 - L2 LINE L2 -15 3298 2952 595 51 0 0 chr13 38060221 38060299 -63812870 - Alu SINE Alu -4 305 228 480 238 8 66 chr13 38060498 38060620 -63812549 - MER5B DNA MER1_type 0 178 64 204 299 58 36 chr13 38060891 38061028 -63812141 + MIR SINE MIR 49 188 -74 234 241 51 51 chr13 38061054 38061133 -63812036 + L1PB1 LINE L1 6009 6087 -64 739 130 9 0 chr13 38061073 38061188 -63811981 + L1PA16 LINE L1 6033 6148 -18 305 182 0 0 chr13 38061219 38061274 -63811895 - MIR SINE MIR -125 137 83 644 246 29 23 chr13 38061774 38061945 -63811224 + MER5B DNA MER1_type 1 172 -6 281 323 115 0 chr13 38061994 38062124 -63811045 + L3b LINE CR1 1251 1395 -188 360 188 135 23 chr13 38062434 38062567 -63810602 - L1ME4a LINE L1 -3 6118 5971 306 0 0 0 chr13 38062568 38062602 -63810567 + (TA)n Simple_repeat Simple_repeat 2 35 0 250 197 66 0 chr13 38063550 38063611 -63809558 - L2 LINE L2 -11 3302 3238 1561 175 153 41 chr13 38063694 38064112 -63809057 - MLT1C LTR MaLR 0 467 3 1396 255 79 18 chr13 38064541 38064914 -63808255 - MER115 DNA AcHobo -51 642 235 1250 176 58 105 chr13 38064914 38065295 -63807874 + MLT1A1 LTR MaLR 1 363 -2 1396 255 79 18 chr13 38065295 38065376 -63807793 - MER115 DNA AcHobo -458 235 160 226 290 101 57 chr13 38065801 38066049 -63807120 - MLT1J LTR MaLR 0 511 253 261 242 99 22 chr13 38066101 38066192 -63806977 + L2 LINE L2 3166 3263 -50 1988 199 68 19 chr13 38066241 38066713 -63806456 + MLT1D LTR MaLR 3 497 -8 1232 257 43 3 chr13 38066792 38067095 -63806074 - LTR16C LTR ERVL 0 491 177 306 236 97 0 chr13 38067282 38067354 -63805815 + MIR SINE MIR 126 204 -58 1047 184 27 68 chr13 38067374 38067665 -63805504 - MLT1D LTR MaLR -155 350 72 1806 163 81 0 chr13 38067665 38067985 -63805184 - MER7A DNA MER2_type -1 345 2 454 267 25 0 chr13 38068003 38068123 -63805046 - MIR SINE MIR -24 238 116 467 279 64 6 chr13 38068978 38069150 -63804019 + MIR SINE MIR 14 195 -67 183 156 0 0 chr13 38069557 38069589 -63803580 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2352 140 22 16 chr13 38069592 38069963 -63803206 - MLT2D LTR ERVL -40 374 2 520 77 0 121 chr13 38070049 38070100 -63803069 - MADE1 DNA Mariner 0 80 43 2028 114 10 0 chr13 38070100 38070390 -63802779 + AluSx SINE Alu 1 293 -19 520 77 0 121 chr13 38070390 38070429 -63802740 - MADE1 DNA Mariner -37 43 1 294 285 68 104 chr13 38070562 38070811 -63802358 + L2 LINE L2 2934 3173 -99 2471 56 0 3 chr13 38070861 38071166 -63802003 - AluY SINE Alu -7 304 1 1669 205 16 32 chr13 38071166 38071476 -63801693 + MLT1A2 LTR MaLR 4 308 -66 500 100 0 12 chr13 38071476 38071556 -63801613 + MADE1 DNA Mariner 1 79 -1 1669 205 16 32 chr13 38071556 38071620 -63801549 + MLT1A2 LTR MaLR 308 372 -2 219 125 0 0 chr13 38072421 38072461 -63800708 + (TG)n Simple_repeat Simple_repeat 2 41 0 340 279 29 69 chr13 38072694 38072918 -63800251 + MIR SINE MIR 19 240 -22 1083 149 0 0 chr13 38073482 38073650 -63799519 + AluJb SINE Alu 123 290 -22 551 273 164 9 chr13 38073906 38074126 -63799043 - MIR SINE MIR -7 255 2 340 236 128 24 chr13 38075267 38075517 -63797652 - L1ME4a LINE L1 -3 6118 5843 3431 169 38 92 chr13 38076396 38077317 -63795852 + MER63C DNA MER1_type 36 906 -24 589 302 109 30 chr13 38077639 38078043 -63795126 - L1ME4a LINE L1 -1316 4830 4395 366 274 50 13 chr13 38078142 38078301 -63794868 - L1M4 LINE L1 -1950 4196 4032 6497 161 30 5 chr13 38078388 38080112 -63793057 - L1PA16 LINE L1 -1 6165 4378 423 0 0 0 chr13 38080112 38080159 -63793010 + (TG)n Simple_repeat Simple_repeat 2 48 0 6497 161 30 5 chr13 38080159 38080575 -63792594 - L1PA16 LINE L1 -1788 4378 3974 1712 174 20 0 chr13 38080568 38080867 -63792302 - L1MB7 LINE L1 -52 6132 5828 * 24 53 0 0 chr13 38080922 38080960 -63792209 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 38081032 38081060 -63792109 + AT_rich Low_complexity Low_complexity 1 28 0 254 283 59 138 chr13 38081508 38081812 -63791357 + L2 LINE L2 2943 3222 -50 183 80 0 0 chr13 38081835 38081860 -63791309 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 2197 89 10 0 chr13 38082041 38082333 -63790836 - AluSq SINE Alu -18 295 1 2190 103 3 6 chr13 38082789 38083100 -63790069 - AluSx SINE Alu -2 310 1 396 293 31 16 chr13 38084895 38085086 -63788083 + L1ME4a LINE L1 5926 6119 -2 373 338 25 20 chr13 38085437 38085635 -63787534 + MIR SINE MIR 21 219 -43 219 341 82 22 chr13 38085738 38085873 -63787296 - MIR SINE MIR -59 203 61 1181 233 8 4 chr13 38086288 38086550 -63786619 - MER93a LTR ERV1 -1 401 139 352 298 57 16 chr13 38086663 38086787 -63786382 + L2 LINE L2 3183 3311 -2 496 245 157 25 chr13 38087384 38087543 -63785626 + MER5A DNA MER1_type 10 189 0 1527 226 63 53 chr13 38088879 38089389 -63783780 - L1ME3 LINE L1 -2 6160 5646 712 125 0 27 chr13 38089396 38089508 -63783661 - LTR40a LTR ERVL -7 512 404 1628 199 122 99 chr13 38089519 38090168 -63783001 + LTR49-int LTR ERV1 460 1123 -5208 2683 97 8 3 chr13 38090312 38090674 -63782495 - THE1B LTR MaLR 0 364 1 1096 98 0 0 chr13 38090883 38091026 -63782143 + AluSg/x SINE Alu 154 296 -16 1107 210 126 43 chr13 38091026 38091374 -63781795 - MLT1D LTR MaLR -128 377 1 205 250 213 0 chr13 38091374 38091454 -63781715 - L2 LINE L2 -678 2636 2540 343 304 51 43 chr13 38091487 38091625 -63781544 - L2 LINE L2 0 3272 3134 547 275 27 0 chr13 38092316 38092465 -63780704 - MER115 DNA AcHobo 0 693 541 1979 141 0 0 chr13 38092465 38092762 -63780407 + AluSq SINE Alu 1 297 -16 772 320 114 20 chr13 38092792 38093142 -63780027 - MER115 DNA AcHobo -236 457 75 207 0 0 0 chr13 38093726 38093749 -63779420 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 331 87 0 0 chr13 38093759 38093805 -63779364 - MADE1 DNA Mariner -34 46 1 272 264 82 27 chr13 38093806 38093916 -63779253 - L2 LINE L2 -19 3294 3179 1664 151 65 0 chr13 38093932 38094223 -63778946 - AluJb SINE Alu -2 310 1 181 270 191 0 chr13 38094485 38094548 -63778621 - L2 LINE L2 -40 3232 3158 1949 144 0 0 chr13 38095416 38095700 -63777469 + AluSx SINE Alu 1 284 -28 635 25 12 0 chr13 38095703 38095784 -63777385 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 323 304 182 46 chr13 38097396 38097806 -63775363 + L2 LINE L2 2791 3271 -1 457 222 111 15 chr13 38097982 38098117 -63775052 + LTR33 LTR ERVL 70 217 -304 196 243 230 14 chr13 38098498 38098572 -63774597 - MIR SINE MIR -53 209 120 487 233 53 27 chr13 38098641 38098791 -63774378 + MIR SINE MIR 32 185 -77 25 31 0 0 chr13 38099100 38099132 -63774037 + AT_rich Low_complexity Low_complexity 1 32 0 307 292 11 11 chr13 38099511 38099600 -63773569 + (TG)n Simple_repeat Simple_repeat 2 90 0 213 321 92 9 chr13 38100000 38100109 -63773060 + MIR SINE MIR 36 153 -109 272 233 137 0 chr13 38100187 38100260 -63772909 + L2 LINE L2 3174 3256 -16 225 65 0 0 chr13 38100693 38100724 -63772445 + (A)n Simple_repeat Simple_repeat 1 31 0 270 0 0 0 chr13 38100907 38100937 -63772232 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 378 139 0 0 chr13 38101136 38101208 -63771961 + (CCA)n Simple_repeat Simple_repeat 1 72 0 242 224 0 0 chr13 38101819 38101877 -63771292 + T-rich Low_complexity Low_complexity 1 58 0 304 297 135 42 chr13 38102941 38103133 -63770036 - L3b LINE CR1 -254 1329 1120 276 332 58 8 chr13 38104257 38104398 -63768771 - MIR SINE MIR -62 146 18 1669 161 13 17 chr13 38104555 38104853 -63768316 + AluJo SINE Alu 1 297 -15 714 293 27 18 chr13 38105358 38105583 -63767586 - MIR SINE MIR -4 258 32 2035 187 64 10 chr13 38105739 38106145 -63767024 - MER63B DNA MER1_type -1 435 8 1401 148 7 1 chr13 38106145 38106450 -63766719 + MER2 DNA MER2_type 2 344 -1 396 298 121 0 chr13 38108772 38108913 -63764256 - MER5A DNA MER1_type -3 186 29 1535 121 124 8 chr13 38110159 38110439 -63762730 + AluSg SINE Alu 4 312 0 861 179 0 27 chr13 38110545 38110729 -63762440 - MER53 DNA DNA -9 180 2 216 254 153 34 chr13 38111091 38111209 -63761960 - L2 LINE L2 -11 3302 3171 650 249 63 116 chr13 38111364 38111762 -63761407 - LTR40a LTR ERVL -142 377 1 1321 196 5 0 chr13 38111948 38112168 -63761001 - MER58A DNA MER1_type 0 224 4 1790 241 56 26 chr13 38112751 38113253 -63759916 - MER74B LTR ERVL -50 572 56 300 229 33 0 chr13 38113492 38113553 -63759616 - MER91B DNA MER1_type -126 64 2 331 197 16 0 chr13 38113591 38113652 -63759517 - LTR67 LTR ERVL -2 555 494 3166 156 139 38 chr13 38113671 38114375 -63758794 + LTR48 LTR ERV1 3 777 -10 198 0 0 0 chr13 38115563 38115585 -63757584 + (T)n Simple_repeat Simple_repeat 1 22 0 201 39 0 0 chr13 38116988 38117014 -63756155 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1625 182 27 90 chr13 38117223 38117445 -63755724 - MER31B LTR ERV1 -13 648 414 1661 179 7 13 chr13 38117445 38117747 -63755422 + AluJb SINE Alu 1 300 -12 1625 182 27 90 chr13 38117747 38118001 -63755168 - MER31B LTR ERV1 -247 414 7 497 251 33 20 chr13 38118484 38118757 -63754412 + MER20B DNA MER1_type 396 709 -74 1440 96 41 5 chr13 38119094 38119314 -63753855 + MER34B LTR ERV1 1 204 -361 2990 184 105 5 chr13 38119367 38120066 -63753103 - MER21B LTR ERV1 -61 802 1 1983 163 34 0 chr13 38120066 38120421 -63752748 + MER34B LTR ERV1 199 565 0 232 287 123 0 chr13 38120442 38120564 -63752605 + L2 LINE L2 2925 3061 -211 190 280 80 40 chr13 38120700 38120775 -63752394 + L2 LINE L2 3187 3264 -8 2603 108 23 83 chr13 38120806 38121278 -63751891 + MER65A LTR ERV1 2 445 0 256 0 24 49 chr13 38122188 38122229 -63750940 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 323 224 15 119 chr13 38122901 38123035 -63750134 - MER21B LTR ERV1 -415 448 329 244 239 43 54 chr13 38123067 38123159 -63750010 + L2 LINE L2 3182 3272 0 371 271 10 85 chr13 38123180 38123379 -63749790 - L2 LINE L2 -17 3296 3113 403 278 9 28 chr13 38123433 38123541 -63749628 - MLT1L LTR MaLR -508 107 2 467 193 155 68 chr13 38124345 38124393 -63748776 - MER5A DNA MER1_type 0 189 147 1580 172 6 63 chr13 38124393 38124724 -63748445 - AluJo SINE Alu 0 312 1 467 193 155 68 chr13 38124724 38124836 -63748333 - MER5A DNA MER1_type -42 147 15 206 247 94 24 chr13 38124819 38124904 -63748265 + MIR3 SINE MIR 115 205 -3 * 323 285 58 22 chr13 38124920 38125057 -63748112 - MLT1J LTR MaLR -369 142 1 282 237 193 0 chr13 38125059 38125173 -63747996 - MIR SINE MIR -10 252 117 1566 180 26 7 chr13 38125177 38125449 -63747720 + AluJb SINE Alu 1 277 -35 3092 75 58 0 chr13 38125452 38125868 -63747301 + MLT2A1 LTR ERVL 5 444 0 43619 64 7 3 chr13 38125868 38131193 -63741976 + HERVL-A1-A1 LTR ERVL 1 5348 -306 2654 63 11 0 chr13 38131348 38131696 -63741473 + HERVL-A1-A1 LTR ERVL 5303 5654 0 3495 70 5 0 chr13 38131696 38132136 -63741033 + MLT2A1 LTR ERVL 1 442 -2 215 130 0 43 chr13 38132149 38132195 -63740974 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 2201 122 18 42 chr13 38132200 38132584 -63740585 + THE1C LTR MaLR 1 375 0 625 175 16 104 chr13 38133265 38133379 -63739790 - MER96B DNA MER1_type? -1 416 322 1394 209 84 23 chr13 38133379 38133723 -63739446 + MLT1A1 LTR MaLR 1 365 0 625 175 16 104 chr13 38133723 38133791 -63739378 - MER96B DNA MER1_type? -95 322 250 1830 215 74 37 chr13 38134059 38134541 -63738628 + MER39 LTR ERV1 6 652 -55 3021 160 65 24 chr13 38134541 38135160 -63738009 + LTR48B LTR ERV1 1 644 0 1830 215 74 37 chr13 38135160 38135219 -63737950 + MER39 LTR ERV1 652 707 0 700 294 57 11 chr13 38135264 38135529 -63737640 + L1ME4a LINE L1 5611 5887 -234 2194 117 0 28 chr13 38137551 38137868 -63735301 + AluSx SINE Alu 5 312 0 303 293 179 7 chr13 38138290 38138430 -63734739 - MER5A DNA MER1_type -6 183 20 763 262 28 14 chr13 38138454 38138668 -63734501 - MIR SINE MIR -26 236 20 272 296 173 12 chr13 38139089 38139251 -63733918 - MIR SINE MIR -54 208 21 1563 245 102 47 chr13 38139264 38139823 -63733346 - MLT1G LTR MaLR 0 590 1 249 119 0 0 chr13 38140681 38140723 -63732446 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 1490 301 69 38 chr13 38140742 38140930 -63732239 - L2 LINE L2 -55 3258 3077 2583 49 0 0 chr13 38140930 38141237 -63731932 - AluY SINE Alu -4 307 1 1490 301 69 38 chr13 38141237 38141990 -63731179 - L2 LINE L2 -236 3077 2292 2301 101 3 0 chr13 38142614 38142910 -63730259 + AluSx SINE Alu 1 297 -15 235 279 14 16 chr13 38143902 38143981 -63729188 - MIR SINE MIR -101 107 29 2320 104 0 7 chr13 38144602 38144909 -63728260 - AluSx SINE Alu -2 310 6 605 178 37 0 chr13 38145291 38145398 -63727771 + MLT1I LTR MaLR 296 406 -3 913 256 48 24 chr13 38145729 38145979 -63727190 + MIR SINE MIR 7 262 0 2984 163 19 30 chr13 38147243 38147807 -63725362 + MER74A LTR ERVL 1 558 0 2234 8 0 0 chr13 38148130 38148367 -63724802 + AluYb8 SINE Alu 74 310 -8 922 287 36 58 chr13 38148863 38149044 -63724125 + MLT1I LTR MaLR 8 191 -218 718 153 112 182 chr13 38149044 38149224 -63723945 + MER33 DNA MER1_type 2 148 -2437 2500 67 0 3 chr13 38149224 38149523 -63723646 - AluY SINE Alu -13 298 1 718 153 112 182 chr13 38149523 38149689 -63723480 + MER33 DNA MER1_type 148 324 0 922 287 36 58 chr13 38149689 38149918 -63723251 + MLT1I LTR MaLR 191 409 0 626 267 54 33 chr13 38150630 38150870 -63722299 - MLT1J LTR MaLR -50 461 217 270 220 0 0 chr13 38152629 38152679 -63720490 + AluSg/x SINE Alu 138 187 -115 2235 107 13 0 chr13 38152681 38152979 -63720190 + AluSx SINE Alu 1 302 -10 1452 167 62 23 chr13 38152992 38153250 -63719919 + 7SLRNA srpRNA srpRNA 43 310 -10 582 251 14 65 chr13 38153396 38153611 -63719558 - MIR SINE MIR -50 212 9 189 0 0 0 chr13 38153790 38153811 -63719358 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 719 293 128 18 chr13 38154615 38154950 -63718219 + MLT1D LTR MaLR 1 372 -133 785 236 0 6 chr13 38155092 38155257 -63717912 + FRAM SINE Alu 1 164 -2 218 29 59 0 chr13 38155842 38155876 -63717293 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2190 104 0 0 chr13 38155883 38156163 -63717006 - AluSx SINE Alu -32 280 1 2401 88 3 0 chr13 38156638 38156935 -63716234 - AluSq SINE Alu -15 298 1 216 0 0 0 chr13 38157011 38157035 -63716134 + (T)n Simple_repeat Simple_repeat 1 24 0 336 264 138 0 chr13 38157135 38157302 -63715867 + L2 LINE L2 2829 3018 -254 3901 173 58 4 chr13 38157321 38158040 -63715129 + L1MCa LINE L1 20 777 -5649 1678 192 83 3 chr13 38158067 38158405 -63714764 + MLT1A1 LTR MaLR 1 365 0 570 249 163 20 chr13 38158432 38158677 -63714492 + L2 LINE L2 3034 3313 0 274 216 39 13 chr13 38158842 38158995 -63714174 + (TA)n Simple_repeat Simple_repeat 1 157 0 1360 158 85 95 chr13 38159413 38159776 -63713393 + MLT2B1 LTR ERVL 1 411 -104 312 27 0 0 chr13 38160189 38160226 -63712943 + (TG)n Simple_repeat Simple_repeat 1 37 0 267 146 0 0 chr13 38160740 38160781 -63712388 - L2 LINE L2 -19 3253 3213 213 368 110 0 chr13 38160931 38161067 -63712102 - L2 LINE L2 -185 3087 2937 208 327 0 37 chr13 38161346 38161453 -63711716 - L2 LINE L2 -547 2767 2665 328 236 195 54 chr13 38162373 38162703 -63710466 + L1MC5 LINE L1 7507 7866 -95 2274 91 0 7 chr13 38162707 38163015 -63710154 - AluY SINE Alu 0 306 1 539 128 0 0 chr13 38163032 38163110 -63710059 - MADE1 DNA Mariner 0 80 3 306 292 21 0 chr13 38163321 38163417 -63709752 - MIR SINE MIR 0 262 165 713 273 65 26 chr13 38163598 38163698 -63709471 - MIR SINE MIR 0 262 167 1816 236 84 12 chr13 38163698 38164210 -63708959 + MLT1H LTR MaLR 1 549 0 713 273 65 26 chr13 38164210 38164340 -63708829 - MIR SINE MIR -95 167 23 1524 163 115 9 chr13 38164481 38164819 -63708350 - MLT1A2 LTR MaLR 0 374 1 314 392 75 7 chr13 38165050 38165328 -63707841 - L2 LINE L2 -522 2792 2496 4599 151 34 52 chr13 38166314 38167234 -63705935 - MER4D LTR ERV1 0 903 1 1939 130 35 7 chr13 38168248 38168533 -63704636 - AluJb SINE Alu -19 293 1 750 250 11 0 chr13 38169023 38169199 -63703970 + MER5B DNA MER1_type 1 178 0 326 250 53 53 chr13 38169487 38169639 -63703530 + MER103 DNA DNA 3 154 -12 1009 178 31 11 chr13 38169708 38169899 -63703270 + MER20 DNA MER1_type 25 219 0 296 301 7 34 chr13 38169956 38170102 -63703067 + GA-rich Low_complexity Low_complexity 1 142 0 3328 129 30 60 chr13 38170106 38170742 -63702427 + L1MC1 LINE L1 5712 6328 -5 243 0 0 0 chr13 38170749 38170776 -63702393 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2388 209 109 20 chr13 38172330 38172918 -63700251 + MER82 DNA MER2_type 7 646 -7 382 347 59 23 chr13 38172925 38173144 -63700025 + MIR SINE MIR 5 231 -31 182 262 79 56 chr13 38173618 38173744 -63699425 + MER5B DNA MER1_type 22 150 -28 * 383 223 36 18 chr13 38173643 38173755 -63699414 - MER5A DNA MER1_type -48 141 28 316 331 45 25 chr13 38173819 38173976 -63699193 + MIR3 SINE MIR 28 187 -21 243 253 0 38 chr13 38173992 38174071 -63699098 + MIR SINE MIR 131 206 -56 2297 68 4 7 chr13 38174782 38175104 -63698065 - AluSc SINE Alu 0 322 2 426 291 26 7 chr13 38175253 38175404 -63697765 - MIR SINE MIR -10 252 99 858 204 82 66 chr13 38175554 38175858 -63697311 - L1MC5 LINE L1 -48 7913 7605 220 313 40 13 chr13 38176113 38176263 -63696906 + MIR3 SINE MIR 47 200 -8 242 229 117 10 chr13 38177062 38177159 -63696010 + MIR SINE MIR 56 162 -46 422 127 0 0 chr13 38177853 38177916 -63695253 + MER116 DNA Mariner 2 64 -16 343 276 32 8 chr13 38182225 38182348 -63690821 - MIR3 SINE MIR -2 206 81 306 225 70 0 chr13 38183301 38183367 -63689802 - MER21B LTR ERV1 -112 751 681 478 244 57 52 chr13 38183367 38183560 -63689609 - LTR45B LTR ERV1 0 489 296 500 236 58 42 chr13 38183952 38184143 -63689026 + LTR45B LTR ERV1 296 489 0 430 195 63 14 chr13 38184821 38185015 -63688154 + LTR57-int LTR ERVL 438 707 -4636 * 507 173 0 0 chr13 38185008 38185089 -63688080 + MER84-int LTR ERV1 1208 1288 -498 * 6302 191 75 69 chr13 38185088 38188269 -63684900 + MER84-int LTR ERV1 885 5602 -708 298 360 20 0 chr13 38188667 38188820 -63684349 + MER84-int LTR ERV1 4274 4429 -525 1837 68 63 0 chr13 38189013 38189250 -63683919 + AluY SINE Alu 49 300 -11 3266 184 21 2 chr13 38190011 38190615 -63682554 - L1MB2 LINE L1 -78 6093 5478 2051 148 3 0 chr13 38190629 38190926 -63682243 + AluSx SINE Alu 1 298 -14 1802 216 68 7 chr13 38191164 38191604 -63681565 - MLT1C LTR MaLR 0 467 1 2380 97 64 11 chr13 38192603 38192963 -63680206 + L1PA11 LINE L1 5796 6174 0 215 279 35 35 chr13 38193045 38193058 -63680111 + MIR SINE MIR 69 81 -127 1629 183 79 28 chr13 38193058 38193414 -63679755 - MLT1A2 LTR MaLR 0 374 1 215 279 35 35 chr13 38193414 38193486 -63679683 + MIR SINE MIR 80 151 -57 270 275 143 37 chr13 38195443 38195632 -63677537 + MIR SINE MIR 20 228 -34 2054 130 3 7 chr13 38195702 38196001 -63677168 - AluSx SINE Alu -14 298 1 202 182 0 45 chr13 38196076 38196120 -63677049 + GA-rich Low_complexity Low_complexity 4 45 0 692 179 112 31 chr13 38196197 38196393 -63676776 - MIR SINE MIR 0 262 51 292 338 69 10 chr13 38196437 38196634 -63676535 + MIR SINE MIR 35 248 -14 201 74 0 0 chr13 38198234 38198261 -63674908 + (TA)n Simple_repeat Simple_repeat 2 28 0 2540 61 0 3 chr13 38198261 38198558 -63674611 - AluY SINE Alu -15 296 1 1832 297 43 91 chr13 38198560 38199049 -63674120 - Charlie7 DNA MER1_type -69 2543 2032 560 202 8 8 chr13 38199049 38199178 -63673991 + L1MB7 LINE L1 6038 6166 -18 3202 63 55 26 chr13 38199178 38199621 -63673548 - L1PB2 LINE L1 -2 6149 5680 1832 297 43 91 chr13 38199621 38200169 -63673000 - Charlie7 DNA MER1_type -578 2034 1487 1048 147 6 6 chr13 38200219 38200375 -63672794 - AluJ SINE Alu -28 284 129 199 0 0 61 chr13 38200379 38200412 -63672757 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 730 179 8 0 chr13 38200533 38200650 -63672519 - AluJ SINE Alu -193 119 2 1157 266 125 20 chr13 38200656 38201104 -63672065 - Charlie7 DNA MER1_type -1141 1471 977 1074 262 118 32 chr13 38201108 38201892 -63671277 - L2 LINE L2 0 3313 2418 502 43 0 0 chr13 38201892 38201961 -63671208 - L1PA2 LINE L1 0 6155 6087 1074 262 118 32 chr13 38201961 38202180 -63670989 - L2 LINE L2 -895 2418 2219 741 259 123 13 chr13 38202188 38202505 -63670664 - Charlie7 DNA MER1_type -1646 966 615 908 296 71 24 chr13 38202536 38202945 -63670224 - Charlie7 DNA MER1_type -2096 516 89 1340 159 0 0 chr13 38202954 38203155 -63670014 - AluJb SINE Alu -1 311 111 509 263 133 78 chr13 38204690 38204814 -63668355 - LTR33 LTR ERVL -156 365 249 4047 134 123 7 chr13 38204814 38205551 -63667618 + LTR1B LTR ERV1 2 824 -2 509 263 133 78 chr13 38205551 38205772 -63667397 - LTR33 LTR ERVL -272 249 1 203 229 55 101 chr13 38205795 38205904 -63667265 - MER5A DNA MER1_type -22 167 64 2309 98 3 0 chr13 38205920 38206227 -63666942 + AluSp SINE Alu 1 308 -5 2206 125 0 3 chr13 38206368 38206672 -63666497 + AluSq SINE Alu 5 307 -6 453 36 0 0 chr13 38206672 38206727 -63666442 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 373 240 20 10 chr13 38208278 38208378 -63664791 + MLT1J2 LTR MaLR 63 163 -287 308 282 34 34 chr13 38208648 38208765 -63664404 - MIR SINE MIR -112 150 34 2536 47 0 13 chr13 38209811 38210109 -63663060 + AluY SINE Alu 1 294 -17 251 212 0 15 chr13 38210450 38210516 -63662653 + CT-rich Low_complexity Low_complexity 3 67 0 630 195 30 67 chr13 38210760 38210978 -63662191 - MER106B DNA MER1_type -1 1058 22 228 86 0 0 chr13 38211553 38211588 -63661581 + (GA)n Simple_repeat Simple_repeat 2 36 0 1655 188 46 56 chr13 38211871 38212264 -63660905 + MSTD LTR MaLR 8 396 0 2193 121 0 7 chr13 38213491 38213797 -63659372 + AluSx SINE Alu 1 304 -8 191 254 8 110 chr13 38214318 38214436 -63658733 + MIR SINE MIR 112 217 -45 44095 47 0 9 chr13 38215250 38221444 -63651725 + L1PA3 LINE L1 9 6148 -7 25 0 0 0 chr13 38221444 38221469 -63651700 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr13 38221473 38221495 -63651674 + (A)n Simple_repeat Simple_repeat 1 22 0 1982 158 3 0 chr13 38221554 38222025 -63651144 + AluSx SINE Alu 1 312 0 5966 54 1 0 chr13 38222059 38222744 -63650425 + L1PA7 LINE L1 5466 6151 -3 393 274 232 12 chr13 38223753 38223921 -63649248 - MIR SINE MIR -56 206 2 1772 167 48 12 chr13 38224152 38224487 -63648682 + THE1C LTR MaLR 29 375 0 548 220 16 14 chr13 38224668 38224699 -63648470 - L1PB4 LINE L1 -4 6162 6133 2255 124 156 13 chr13 38224699 38225071 -63648098 + MSTA LTR MaLR 4 428 0 548 220 16 14 chr13 38225071 38225181 -63647988 - L1PB4 LINE L1 -33 6133 6024 1160 183 0 38 chr13 38225869 38226082 -63647087 + AluJo SINE Alu 85 289 -23 258 250 25 12 chr13 38226166 38226246 -63646923 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 512 234 84 45 chr13 38227460 38227500 -63645669 - MLT1H LTR MaLR -2 550 513 984 217 68 5 chr13 38227500 38227707 -63645462 + MER58A DNA MER1_type 3 222 -2 512 234 84 45 chr13 38227707 38227877 -63645292 - MLT1H LTR MaLR -39 513 322 239 180 144 77 chr13 38227911 38228044 -63645125 - MLT1I LTR MaLR -270 139 96 261 0 0 0 chr13 38228306 38228335 -63644834 + (GA)n Simple_repeat Simple_repeat 2 30 0 328 243 9 54 chr13 38228484 38228595 -63644574 + LTR33A LTR ERVL 418 523 0 346 295 82 76 chr13 38228603 38229105 -63644064 - L1MC/D LINE L1 -2038 5770 5266 2740 171 0 14 chr13 38229128 38229560 -63643609 + MSTB LTR MaLR 1 426 0 10496 149 9 33 chr13 38229560 38231251 -63641918 + MSTB-int LTR MaLR 1 1651 0 2569 189 12 7 chr13 38231251 38231675 -63641494 + MSTB LTR MaLR 1 426 0 26 50 0 0 chr13 38231708 38231748 -63641421 + AT_rich Low_complexity Low_complexity 1 40 0 1900 212 29 73 chr13 38232224 38232754 -63640415 + MLT2B3 LTR ERVL 3 405 -48 321 335 87 5 chr13 38232784 38233151 -63640018 - L1MC/D LINE L1 -1544 4602 4186 192 77 0 0 chr13 38233630 38233656 -63639513 + (TG)n Simple_repeat Simple_repeat 2 27 0 367 296 136 24 chr13 38233860 38234156 -63639013 - MLT1L LTR MaLR -6 505 235 43740 32 21 2 chr13 38234443 38240480 -63632689 - L1PA2 LINE L1 0 6155 1 875 158 8 0 chr13 38240487 38240620 -63632549 - AluJo SINE Alu -176 136 3 430 311 114 17 chr13 38240652 38241003 -63632166 - L1MC/D LINE L1 -2323 3823 3439 223 184 20 0 chr13 38241085 38241134 -63632035 + CT-rich Low_complexity Low_complexity 1 50 0 3729 73 0 0 chr13 38241451 38241917 -63631252 - MER41A LTR ERV1 -88 466 1 9862 68 21 12 chr13 38241917 38243221 -63629948 - MER41A-int LTR ERV1 -2 5944 4630 1338 133 0 10 chr13 38243207 38243410 -63629759 - PRIMA41-int LTR ERV1 -2140 2875 2675 * 451 138 32 64 chr13 38243401 38243495 -63629674 - PRIMA41-int LTR ERV1 -7662 94 4 * 31855 110 11 57 chr13 38243877 38250333 -63622836 + L1PA7 LINE L1 10 6153 -1 234 0 0 0 chr13 38251046 38251072 -63622097 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 857 196 49 0 chr13 38251072 38251215 -63621954 - FRAM SINE Alu -16 150 1 579 295 124 5 chr13 38251241 38251451 -63621718 - MLT1J1 LTR MaLR -5 441 207 498 275 8 0 chr13 38251463 38251594 -63621575 - MLT1J2 LTR MaLR -282 168 37 1747 167 17 17 chr13 38251676 38251976 -63621193 + AluJo SINE Alu 3 302 -10 2511 84 0 0 chr13 38252449 38252760 -63620409 - AluSq SINE Alu -2 311 1 234 0 0 0 chr13 38252876 38252902 -63620267 + (TC)n Simple_repeat Simple_repeat 1 26 0 412 266 96 15 chr13 38252907 38253106 -63620063 + MLT1J1 LTR MaLR 231 445 -1 1719 209 90 37 chr13 38253286 38253798 -63619371 - HsTC2 DNA Tc2 0 1899 1185 359 265 109 14 chr13 38254380 38254527 -63618642 + MIR SINE MIR 89 249 -13 18411 95 6 0 chr13 38254673 38257980 -63615189 + L1PA7 LINE L1 2823 6152 -2 305 162 15 0 chr13 38258706 38258774 -63614395 + CT-rich Low_complexity Low_complexity 2 70 0 192 310 92 23 chr13 38259914 38260001 -63613168 - L2 LINE L2 0 3272 3180 257 285 73 56 chr13 38261773 38261952 -63611217 + L2 LINE L2 368 549 -2765 349 267 0 22 chr13 38262033 38262123 -63611046 + L2 LINE L2 3183 3270 -2 446 279 81 15 chr13 38262149 38262346 -63610823 + L3 LINE CR1 662 871 -706 219 273 129 38 chr13 38262346 38262478 -63610691 + L3 LINE CR1 1219 1362 -215 26 30 0 0 chr13 38263472 38263505 -63609664 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr13 38263505 38263530 -63609639 + (CA)n Simple_repeat Simple_repeat 2 26 0 1762 138 58 21 chr13 38263535 38263789 -63609380 + MER7A DNA MER2_type 10 278 -2760 4608 114 14 29 chr13 38263789 38264526 -63608643 - LTR8A LTR ERV1 0 727 2 1762 138 58 21 chr13 38264526 38264597 -63608572 + MER7A DNA MER2_type 278 345 -1 618 264 178 49 chr13 38264730 38265117 -63608052 - L2 LINE L2 -14 3299 2863 183 328 15 0 chr13 38265524 38265591 -63607578 + MIR SINE MIR 195 262 0 236 387 89 26 chr13 38268747 38269049 -63604120 + L3 LINE CR1 147 467 -1110 30 0 0 0 chr13 38270038 38270068 -63603101 + AT_rich Low_complexity Low_complexity 1 30 0 963 210 0 0 chr13 38270235 38270402 -63602767 + FAM SINE Alu 1 167 -8 1405 258 124 45 chr13 38270614 38271587 -63601582 - L2 LINE L2 -2 3311 2268 316 274 32 42 chr13 38272421 38272516 -63600653 + L2 LINE L2 3200 3293 -20 644 169 0 8 chr13 38273308 38273432 -63599737 - MER69 DNA AcHobo -10 2516 2394 12006 110 11 58 chr13 38273448 38276307 -63596862 + L1P3 LINE L1 9 2850 -3611 327 327 139 15 chr13 38277143 38277473 -63595696 - L1ME4a LINE L1 -99 6022 5652 2069 126 7 7 chr13 38278941 38279243 -63593926 + AluSx SINE Alu 1 302 -10 231 36 0 0 chr13 38279440 38279468 -63593701 + (TG)n Simple_repeat Simple_repeat 1 28 0 588 171 9 9 chr13 38279888 38279993 -63593176 - FLAM_A SINE Alu -23 119 15 1662 174 9 31 chr13 38280731 38281048 -63592121 - AluJb SINE Alu -2 310 1 1039 184 5 42 chr13 38281235 38281452 -63591717 + MER6B DNA MER2_type 2 210 0 26 30 0 0 chr13 38283525 38283558 -63589611 + AT_rich Low_complexity Low_complexity 1 33 0 427 199 252 0 chr13 38283771 38283902 -63589267 - MER105 DNA DNA -16 188 25 275 303 36 76 chr13 38284213 38284402 -63588767 - MIR SINE MIR -45 163 12 2345 67 3 7 chr13 38286097 38286397 -63586772 + AluY SINE Alu 1 299 -12 2273 116 0 0 chr13 38286584 38286887 -63586282 + AluSx SINE Alu 1 303 -9 669 78 72 0 chr13 38287483 38287649 -63585520 + (TA)n Simple_repeat Simple_repeat 1 178 0 212 95 0 48 chr13 38287649 38287691 -63585478 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 654 88 65 6 chr13 38287691 38287861 -63585308 + (TA)n Simple_repeat Simple_repeat 1 180 0 1739 174 46 0 chr13 38288131 38288412 -63584757 + AluJb SINE Alu 2 295 -17 1865 170 0 3 chr13 38288412 38288712 -63584457 + AluJb SINE Alu 1 299 -13 2343 96 0 0 chr13 38291272 38291565 -63581604 + AluSg SINE Alu 3 295 -15 227 248 132 8 chr13 38292008 38292129 -63581040 + L1MC4 LINE L1 7783 7918 -124 240 270 0 11 chr13 38292136 38292225 -63580944 - L1MC4 LINE L1 -1347 6695 6608 2208 126 0 3 chr13 38292509 38292818 -63580351 - AluSg SINE Alu 0 310 3 2315 118 0 0 chr13 38292820 38293125 -63580044 - AluSx SINE Alu -7 305 1 193 374 16 21 chr13 38294229 38294416 -63578753 + L2 LINE L2 2028 2213 -1101 923 206 0 6 chr13 38294529 38294709 -63578460 + AluSg/x SINE Alu 121 299 -13 1383 158 115 29 chr13 38294711 38294989 -63578180 + AluJo SINE Alu 1 302 0 2293 94 0 10 chr13 38295001 38295300 -63577869 + AluSx SINE Alu 1 296 -16 517 100 91 0 chr13 38295301 38295411 -63577758 - MER33 DNA MER1_type -81 282 163 318 78 20 0 chr13 38295400 38295451 -63577718 - Alu SINE Alu -2 300 249 * 2183 91 0 0 chr13 38295582 38295857 -63577312 - AluSx SINE Alu -37 275 1 500 119 80 152 chr13 38295859 38296010 -63577159 - MER33 DNA MER1_type -184 140 1 354 373 6 0 chr13 38296062 38296231 -63576938 + L2 LINE L2 2482 2651 -663 1242 126 5 5 chr13 38297932 38298131 -63575038 + L1PB2 LINE L1 5953 6151 0 21 71 0 0 chr13 38298775 38298817 -63574352 + AT_rich Low_complexity Low_complexity 1 42 0 4847 163 30 68 chr13 38299025 38300221 -63572948 + L1MC3 LINE L1 6634 7784 -1 198 0 0 0 chr13 38300642 38300664 -63572505 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 477 34 0 0 chr13 38300663 38300722 -63572447 + (CA)n Simple_repeat Simple_repeat 2 60 0 1817 153 14 0 chr13 38300732 38301019 -63572150 - AluJb SINE Alu -21 291 1 250 264 216 14 chr13 38301114 38301262 -63571907 - MIR SINE MIR -49 213 36 1085 234 102 41 chr13 38301362 38301824 -63571345 + L1MC4a LINE L1 6308 6797 -1011 1146 221 28 22 chr13 38301919 38302096 -63571073 + L1M4 LINE L1 4651 4832 -1314 216 0 0 0 chr13 38302096 38302120 -63571049 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1146 221 28 22 chr13 38302120 38302264 -63570905 + L1M4 LINE L1 4832 4974 -1172 814 100 0 0 chr13 38302292 38302402 -63570767 + AluSp/q SINE Alu 194 303 -10 736 234 70 8 chr13 38302412 38302656 -63570513 + L1MC4 LINE L1 7708 7966 -76 449 153 15 73 chr13 38302640 38302777 -63570392 + L1MC5 LINE L1 7603 7731 -230 * 352 205 178 49 chr13 38302916 38302938 -63570231 + L1MC5 LINE L1 7705 7723 -238 1902 145 0 7 chr13 38302938 38303257 -63569912 - AluJb SINE Alu 0 317 1 352 205 178 49 chr13 38303257 38303418 -63569751 + L1MC5 LINE L1 7723 7913 -48 2468 69 0 0 chr13 38303786 38304091 -63569078 + AluY SINE Alu 1 305 -6 874 86 8 0 chr13 38304240 38304357 -63568812 + AluJb SINE Alu 1 118 -194 38 0 0 0 chr13 38304357 38304395 -63568774 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr13 38304820 38304852 -63568317 + AT_rich Low_complexity Low_complexity 1 32 0 225 309 71 0 chr13 38304930 38305014 -63568155 - MIR SINE MIR -92 170 81 1909 153 10 16 chr13 38305079 38305386 -63567783 + AluJb SINE Alu 1 305 -7 843 147 0 22 chr13 38305471 38305607 -63567562 + FLAM_C SINE Alu 1 133 0 2293 78 48 0 chr13 38305615 38305909 -63567260 + AluSc SINE Alu 1 308 -1 1706 169 7 13 chr13 38305933 38306241 -63566928 + AluJb SINE Alu 1 306 -6 2357 99 0 0 chr13 38306414 38306716 -63566453 - AluSq SINE Alu -11 302 1 299 224 143 27 chr13 38309930 38310189 -63562980 - L1ME4a LINE L1 -5 6116 5828 234 259 19 0 chr13 38310200 38310254 -63562915 + MIR SINE MIR 195 249 -13 257 317 124 0 chr13 38310341 38310486 -63562683 + MIR SINE MIR 8 170 -92 317 287 96 22 chr13 38310502 38310638 -63562531 - L1ME4a LINE L1 -495 5626 5481 260 264 105 34 chr13 38310895 38311191 -63561978 - L1ME4a LINE L1 -1449 4697 4381 1998 163 3 0 chr13 38311577 38311884 -63561285 - AluJb SINE Alu -4 308 1 184 326 0 54 chr13 38312173 38312265 -63560904 + L2 LINE L2 2601 2687 -627 809 117 39 7 chr13 38312271 38312425 -63560744 - L1MA4 LINE L1 -5 6295 6137 21 0 0 0 chr13 38312588 38312609 -63560560 + AT_rich Low_complexity Low_complexity 1 21 0 4713 123 47 10 chr13 38312710 38313909 -63559260 - L1MA4A LINE L1 -275 6028 4785 193 350 86 29 chr13 38314069 38314209 -63558960 + L2 LINE L2 2937 3084 -188 284 0 0 27 chr13 38314595 38314632 -63558537 + (TCTCCC)n Simple_repeat Simple_repeat 1 36 0 4644 68 25 12 chr13 38314633 38315308 -63557861 + SVA Other Other 20 703 -683 281 152 0 15 chr13 38315442 38315508 -63557661 + L1PB4 LINE L1 6092 6156 0 690 109 0 0 chr13 38315516 38315608 -63557561 - MER31A LTR ERV1 -393 92 1 1513 164 171 32 chr13 38316060 38316494 -63556675 + LTR54B LTR ERV1 1 494 -4 657 340 62 35 chr13 38316734 38317166 -63556003 - LTR16A LTR ERVL 0 450 7 451 299 60 57 chr13 38317526 38318047 -63555122 - L2 LINE L2 0 3313 2514 225 355 0 0 chr13 38318279 38318355 -63554814 + LTR16B LTR ERVL 1 76 -388 328 264 0 78 chr13 38319051 38319244 -63553925 + GA-rich Low_complexity Low_complexity 1 178 0 1238 174 5 9 chr13 38319926 38320145 -63553024 + AluJo SINE Alu 1 218 -94 370 177 73 179 chr13 38320208 38320716 -63552453 - L1ME4a LINE L1 -50 6071 5618 240 218 0 103 chr13 38321781 38321868 -63551301 + L2 LINE L2 3190 3267 -5 497 205 77 64 chr13 38321975 38322131 -63551038 + MER117 DNA MER1_type 6 163 -34 874 217 25 43 chr13 38322207 38322442 -63550727 + MIR SINE MIR 31 261 -1 369 250 138 17 chr13 38322897 38323013 -63550156 + MIR SINE MIR 87 216 -46 278 315 56 42 chr13 38323721 38323864 -63549305 - MIR3 SINE MIR -45 163 19 233 243 27 81 chr13 38324157 38324248 -63548921 - L1ME LINE L1 -208 5913 5827 2171 107 0 0 chr13 38324248 38324556 -63548613 - AluY SINE Alu -3 308 1 233 243 27 81 chr13 38324556 38324575 -63548594 - L1ME LINE L1 -294 5827 5809 214 229 0 21 chr13 38325825 38325873 -63547296 + L2 LINE L2 3261 3307 -6 860 254 22 17 chr13 38326358 38326590 -63546579 + MIR SINE MIR 18 250 -12 214 281 34 67 chr13 38327994 38328083 -63545086 - MIR SINE MIR -157 105 20 192 167 0 28 chr13 38331463 38331499 -63541670 - MER5A DNA MER1_type -115 74 40 230 167 24 0 chr13 38331917 38331959 -63541210 + L2 LINE L2 3263 3305 -8 2254 113 39 36 chr13 38332150 38332513 -63540656 - THE1B LTR MaLR 0 364 1 1776 312 114 34 chr13 38333120 38334187 -63538982 + L3 LINE CR1 301 1453 -124 2074 119 0 0 chr13 38334385 38334678 -63538491 + AluSx SINE Alu 1 293 -19 189 288 220 17 chr13 38335758 38335876 -63537293 - L2 LINE L2 -5 3308 3167 299 235 241 35 chr13 38336919 38337011 -63536158 - MER5A DNA MER1_type -4 185 113 1378 186 54 0 chr13 38337011 38337291 -63535878 - AluJb SINE Alu -17 295 1 299 235 241 35 chr13 38337291 38337344 -63535825 - MER5A DNA MER1_type -76 113 5 2960 142 10 12 chr13 38337583 38338069 -63535100 - MER31A LTR ERV1 0 485 1 1556 155 72 21 chr13 38338169 38338459 -63534710 + AluJo SINE Alu 1 305 -7 2068 93 0 0 chr13 38338505 38338785 -63534384 + AluSc SINE Alu 26 305 -4 224 287 65 73 chr13 38338837 38339015 -63534154 - MIR SINE MIR -44 218 35 186 295 54 8 chr13 38340788 38340917 -63532252 + L2 LINE L2 2758 2892 -422 * 223 307 43 97 chr13 38340893 38341150 -63532019 + L2 LINE L2 2817 3059 -254 948 183 61 5 chr13 38341590 38341787 -63531382 + L1MDa LINE L1 196 403 -6137 189 314 20 0 chr13 38342711 38342762 -63530407 - L2 LINE L2 -563 2751 2700 899 278 78 61 chr13 38343061 38343600 -63529569 - L1MC/D LINE L1 -2006 5802 5255 244 306 90 0 chr13 38343920 38344031 -63529138 - L2 LINE L2 -591 2723 2603 1377 179 13 152 chr13 38344271 38344724 -63528445 - MLT1B LTR MaLR 0 390 1 929 124 0 0 chr13 38345866 38345995 -63527174 - FLAM_C SINE Alu -4 129 1 2039 126 0 0 chr13 38346885 38347178 -63525991 + AluSx SINE Alu 1 293 -19 1163 80 74 0 chr13 38347563 38347726 -63525443 - L1PA11 LINE L1 0 6174 6000 2113 126 85 18 chr13 38348598 38348939 -63524230 - THE1B LTR MaLR 0 364 1 11970 89 11 3 chr13 38348939 38350507 -63522662 - THE1B-int LTR MaLR 0 1580 1 1973 134 102 15 chr13 38350507 38350842 -63522327 - THE1B LTR MaLR 0 364 1 314 161 113 0 chr13 38351276 38351338 -63521831 - L2 LINE L2 -7 3306 3238 326 200 48 67 chr13 38353280 38353385 -63519784 - L2 LINE L2 -777 2537 2435 1030 161 49 45 chr13 38353400 38353624 -63519545 - MER119 DNA MER1_type 0 583 359 533 260 104 58 chr13 38353624 38354110 -63519059 - MER34B LTR ERV1 0 565 5 * 1172 182 50 1 chr13 38354086 38354430 -63518739 - MER119 DNA MER1_type -182 401 10 692 239 94 91 chr13 38354999 38355329 -63517840 + MER46C DNA MER2_type 1 331 -7 2152 118 0 0 chr13 38355443 38355748 -63517421 + AluSx SINE Alu 1 305 -7 399 41 0 0 chr13 38355748 38355797 -63517372 + (TA)n Simple_repeat Simple_repeat 2 50 0 187 115 0 0 chr13 38356463 38356489 -63516680 + MIR SINE MIR 225 250 -12 470 336 22 0 chr13 38356706 38356840 -63516329 + MIR SINE MIR 47 183 -79 258 333 0 44 chr13 38356952 38357042 -63516127 + L3 LINE CR1 180 265 -1312 207 0 0 0 chr13 38357497 38357520 -63515649 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 209 292 77 0 chr13 38357824 38357889 -63515280 + L3 LINE CR1 607 676 -901 583 260 90 86 chr13 38358256 38358721 -63514448 - L2 LINE L2 -3 3310 2844 2900 170 34 16 chr13 38358848 38359354 -63513815 + MLT2B2 LTR ERVL 1 515 0 592 253 280 3 chr13 38359354 38359647 -63513522 - L2 LINE L2 -686 2628 2255 311 255 189 46 chr13 38359605 38359801 -63513368 + L3 LINE CR1 1190 1413 -164 * 2341 87 10 0 chr13 38360773 38361082 -63512087 - AluSx SINE Alu 0 312 1 3387 144 28 2 chr13 38362589 38363129 -63510040 + MER41C LTR ERV1 1 554 0 819 270 80 14 chr13 38363544 38363886 -63509283 - L1ME LINE L1 -422 5699 5338 23 33 0 0 chr13 38365558 38365588 -63507581 + AT_rich Low_complexity Low_complexity 1 30 0 812 140 0 15 chr13 38365829 38365965 -63507204 - L1PB1 LINE L1 -1 6150 6017 187 293 67 0 chr13 38366126 38366201 -63506968 - L2 LINE L2 -1454 1860 1781 225 0 0 0 chr13 38366202 38366227 -63506942 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1474 130 10 0 chr13 38366238 38366446 -63506723 - AluSq SINE Alu -47 266 57 1084 136 156 31 chr13 38366585 38366842 -63506327 - L1MB8 LINE L1 -118 6060 5772 338 310 199 14 chr13 38366871 38367158 -63506011 - L1MC4a LINE L1 -1482 6326 5987 2414 51 41 0 chr13 38367162 38367457 -63505712 - AluY SINE Alu -4 307 1 566 245 217 0 chr13 38367469 38367759 -63505410 - L2 LINE L2 -1597 1717 1365 316 287 9 46 chr13 38367763 38367871 -63505298 - L2 LINE L2 -2067 1247 1144 1619 223 98 38 chr13 38367918 38368491 -63504678 - L1MC4 LINE L1 -2 8040 7434 548 82 0 24 chr13 38369685 38369770 -63503399 - L1PA16 LINE L1 -2 6164 6082 1197 130 10 24 chr13 38371831 38372039 -63501130 - L1MD2 LINE L1 -1 6358 6154 631 214 120 94 chr13 38372461 38372877 -63500292 - L1MC4 LINE L1 -133 7909 7483 247 206 137 0 chr13 38372881 38372954 -63500215 + L1M4 LINE L1 2664 2746 -3400 764 185 20 70 chr13 38373006 38373206 -63499963 + MER20 DNA MER1_type 30 219 0 355 221 157 36 chr13 38373274 38373414 -63499755 + L2 LINE L2 3141 3297 -16 323 178 0 14 chr13 38373992 38374065 -63499104 + C-rich Low_complexity Low_complexity 4 75 0 1688 170 18 4 chr13 38374066 38374342 -63498827 - AluJb SINE Alu -32 280 1 1862 152 10 10 chr13 38374347 38374650 -63498519 - AluSx SINE Alu -9 303 1 212 250 0 0 chr13 38375876 38375924 -63497245 + MIR SINE MIR 82 129 -133 693 258 52 14 chr13 38376183 38376396 -63496773 - MIR SINE MIR -19 243 23 497 257 9 0 chr13 38378058 38378171 -63494998 - MER81 DNA DNA 0 114 1 1551 194 76 45 chr13 38378552 38379000 -63494169 + MLT1C LTR MaLR 6 467 0 1056 161 0 87 chr13 38379219 38379300 -63493869 - AluJo SINE Alu -101 211 125 1906 146 0 10 chr13 38379300 38379615 -63493554 - AluSx SINE Alu 0 312 1 1056 161 0 87 chr13 38379615 38379750 -63493419 - AluJo SINE Alu -187 125 13 325 238 125 12 chr13 38380441 38380601 -63492568 + L2 LINE L2 2888 3065 -248 320 157 121 60 chr13 38380671 38380754 -63492415 + MER82 DNA MER2_type 7 94 -559 6393 49 4 9 chr13 38381042 38381859 -63491310 + SVA Other Other 596 1408 0 223 337 11 11 chr13 38381985 38382077 -63491092 + MIR SINE MIR 34 125 -83 325 337 40 20 chr13 38382415 38382614 -63490555 + L2 LINE L2 3103 3305 -8 294 200 29 0 chr13 38382711 38382781 -63490388 - L1ME4a LINE L1 -82 6039 5968 240 253 121 40 chr13 38383329 38383428 -63489741 + L2 LINE L2 3193 3299 -14 1509 174 97 0 chr13 38384780 38385038 -63488131 + AluSx SINE Alu 1 283 -29 231 301 41 0 chr13 38385302 38385375 -63487794 + L2 LINE L2 3235 3310 -3 1059 167 0 17 chr13 38386028 38386202 -63486967 + FAM SINE Alu 1 171 -4 3218 127 64 7 chr13 38386259 38386803 -63486366 + L1MC1 LINE L1 5759 6333 0 14246 174 23 14 chr13 38386889 38390714 -63482455 + L1PB1 LINE L1 2295 6149 -2 850 315 42 24 chr13 38390799 38391180 -63481989 - L2 LINE L2 -1 3312 2925 406 302 26 37 chr13 38391277 38391466 -63481703 - MLT1J2 LTR MaLR 0 450 264 289 209 67 48 chr13 38391516 38391621 -63481548 - MLT1J1 LTR MaLR -311 135 29 3055 129 38 40 chr13 38392731 38393288 -63479881 + L1MA8 LINE L1 5736 6291 0 181 327 133 9 chr13 38393470 38393583 -63479586 + MIR SINE MIR 132 258 -4 216 273 91 0 chr13 38393881 38393936 -63479233 + L3 LINE CR1 1443 1502 -75 567 268 21 16 chr13 38394691 38394881 -63478288 + L1MEd LINE L1 19 209 -5910 618 249 83 118 chr13 38394941 38395256 -63477913 + L1M4 LINE L1 2676 3000 -3146 1499 203 124 14 chr13 38395256 38395611 -63477558 - MSTD LTR MaLR -2 394 1 618 249 83 118 chr13 38395611 38395634 -63477535 + L1M4 LINE L1 3000 3022 -3124 746 182 0 8 chr13 38395634 38395755 -63477414 + 5S rRNA rRNA 2 121 0 618 249 83 118 chr13 38395755 38396232 -63476937 + L1M4 LINE L1 3022 3464 -2682 279 219 96 0 chr13 38396234 38396307 -63476862 + MLT1C LTR MaLR 1 80 -387 2160 182 63 11 chr13 38396485 38396929 -63476240 + MLT1C LTR MaLR 1 467 0 216 222 0 0 chr13 38396985 38397030 -63476139 - MIR3 SINE MIR -48 160 116 2196 115 3 0 chr13 38398188 38398483 -63474686 - AluSx SINE Alu -16 296 1 296 253 11 0 chr13 38399866 38399953 -63473216 - LTR43 LTR ERV1 -311 291 204 817 181 19 0 chr13 38400287 38400447 -63472722 - MIR SINE MIR -72 190 28 1260 239 36 18 chr13 38400703 38401033 -63472136 - LTR47B LTR ERVL 0 443 108 221 324 29 19 chr13 38401367 38401472 -63471697 - L2 LINE L2 -39 3274 3169 555 186 0 10 chr13 38401472 38401569 -63471600 + MER82 DNA MER2_type 1 96 -557 443 229 10 10 chr13 38401604 38401700 -63471469 - MER82 DNA MER2_type -110 543 448 281 328 17 9 chr13 38401764 38401880 -63471289 + MIR SINE MIR 31 147 -115 26 0 0 0 chr13 38401987 38402013 -63471156 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr13 38402241 38402264 -63470905 + AT_rich Low_complexity Low_complexity 1 23 0 634 279 53 5 chr13 38402847 38403055 -63470114 + MIR SINE MIR 32 249 -13 2356 71 0 52 chr13 38403797 38404105 -63469064 + AluSx SINE Alu 3 294 -18 2331 60 43 0 chr13 38404105 38404387 -63468782 + AluY SINE Alu 1 294 -17 2279 104 3 0 chr13 38404658 38404957 -63468212 + AluY SINE Alu 1 300 -11 594 229 35 47 chr13 38405024 38405194 -63467975 + L1ME1 LINE L1 5984 6151 -15 609 291 38 14 chr13 38405384 38405594 -63467575 - MIR SINE MIR -12 250 36 1717 181 7 7 chr13 38406604 38406902 -63466267 - AluJb SINE Alu -14 298 1 1658 160 23 23 chr13 38407124 38407424 -63465745 + AluJb SINE Alu 1 300 -12 319 314 43 21 chr13 38408020 38408160 -63465009 + MIR SINE MIR 46 188 -74 2540 56 0 28 chr13 38408166 38408486 -63464683 + AluY SINE Alu 1 311 0 225 175 105 0 chr13 38408925 38408982 -63464187 + MIR SINE MIR 197 259 -3 583 263 61 9 chr13 38409230 38409443 -63463726 + L1MCc LINE L1 32 255 -6168 * 1736 300 76 27 chr13 38409424 38409457 -63463712 + L1MCc LINE L1 1326 1356 -5766 2460 77 0 0 chr13 38409457 38409755 -63463414 + AluY SINE Alu 1 298 -13 1736 300 76 27 chr13 38409755 38410529 -63462640 + L1MCc LINE L1 1356 2091 -5031 2473 87 0 0 chr13 38410529 38410838 -63462331 + AluSq SINE Alu 2 310 -3 1736 300 76 27 chr13 38410838 38411135 -63462034 + L1MCc LINE L1 2091 2372 -4750 1801 148 3 53 chr13 38411135 38411439 -63461730 - AluJo SINE Alu -23 289 1 1736 300 76 27 chr13 38411439 38411515 -63461654 + L1MCc LINE L1 2372 2768 -4354 503 158 0 0 chr13 38411520 38411596 -63461573 - Tigger5 DNA MER2_type 0 2323 2248 466 186 54 4 chr13 38411598 38411727 -63461442 - Tigger5 DNA MER2_type -2130 193 1 231 146 0 0 chr13 38411727 38411768 -63461401 + L1MCc LINE L1 2714 2754 -4187 641 167 45 15 chr13 38411880 38412012 -63461157 + L1MD1 LINE L1 6084 6219 -23 393 277 7 51 chr13 38414228 38414365 -63458804 - MIR SINE MIR -52 210 80 2069 126 3 14 chr13 38414957 38415250 -63457919 - AluSx SINE Alu -22 290 1 219 36 0 0 chr13 38615583 38615611 -63257558 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2256 69 7 0 chr13 38615613 38615889 -63257280 - AluY SINE Alu -33 278 1 427 204 7 99 chr13 38616185 38616262 -63256907 + MLT2F LTR ERVL 535 595 -68 189 74 0 0 chr13 38616262 38616289 -63256880 + (CATA)n Simple_repeat Simple_repeat 4 30 0 427 204 7 99 chr13 38616289 38616353 -63256816 + MLT2F LTR ERVL 595 663 0 830 222 13 13 chr13 38616936 38617166 -63256003 + L1M4 LINE L1 4308 4537 -1609 1245 194 66 36 chr13 38617764 38618083 -63255086 - MLT1A1 LTR MaLR -21 369 1 21 57 0 0 chr13 38619383 38619418 -63253751 + AT_rich Low_complexity Low_complexity 1 35 0 475 295 65 37 chr13 38619602 38619932 -63253237 + L1MC4 LINE L1 6630 6961 -1000 318 280 73 38 chr13 38620163 38620424 -63252745 + L1MC4a LINE L1 7144 7413 -395 2263 105 0 0 chr13 38620465 38620759 -63252410 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr13 38620843 38620867 -63252302 + AT_rich Low_complexity Low_complexity 1 24 0 240 214 0 18 chr13 38621020 38621076 -63252093 + GA-rich Low_complexity Low_complexity 4 58 0 1755 132 55 66 chr13 38621430 38621809 -63251360 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr13 38623491 38623519 -63249650 + AT_rich Low_complexity Low_complexity 1 28 0 9847 98 5 1 chr13 38623626 38625305 -63247864 - L1P3 LINE L1 -530 5624 3942 3194 79 7 11 chr13 38625305 38625750 -63247419 + L1PA8 LINE L1 5720 6172 0 26 0 0 0 chr13 38625750 38625776 -63247393 + AT_rich Low_complexity Low_complexity 1 26 0 1221 243 14 24 chr13 38626011 38626577 -63246592 + L1M3c LINE L1 826 1483 -4658 1340 193 46 39 chr13 38626581 38626866 -63246303 + AluJo SINE Alu 6 292 -20 1426 283 70 13 chr13 38626867 38627479 -63245690 + L1M4c LINE L1 1227 1873 -4511 1055 205 12 24 chr13 38627600 38627854 -63245315 - L1M4c LINE L1 -4494 1890 1640 286 244 26 13 chr13 38628663 38628741 -63244428 + MLT1L LTR MaLR 7 85 -530 208 176 20 0 chr13 38628885 38628936 -63244233 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1915 133 7 3 chr13 38629587 38629872 -63243297 - AluSx SINE Alu -26 286 1 35 24 0 0 chr13 38629938 38629980 -63243189 + AT_rich Low_complexity Low_complexity 1 42 0 4373 171 14 21 chr13 38630685 38631484 -63241685 + MER54B LTR ERVL 1 793 0 27 62 0 0 chr13 38631951 38631999 -63241170 + AT_rich Low_complexity Low_complexity 1 48 0 211 326 58 0 chr13 38632127 38632213 -63240956 - MIR SINE MIR -123 139 49 861 181 119 0 chr13 38632787 38632980 -63240189 + L1MA9 LINE L1 5896 6111 -201 1954 101 56 7 chr13 38633135 38633421 -63239748 - AluSq SINE Alu -13 300 1 414 0 0 0 chr13 38633526 38633572 -63239597 + (CA)n Simple_repeat Simple_repeat 1 46 0 762 157 29 0 chr13 38633572 38633712 -63239457 + L1MA9 LINE L1 6168 6311 -1 24 0 0 0 chr13 38633821 38633845 -63239324 + AT_rich Low_complexity Low_complexity 1 24 0 202 303 73 46 chr13 38634663 38634772 -63238397 - MIR3 SINE MIR -25 183 72 21 36 0 0 chr13 38635303 38635331 -63237838 + AT_rich Low_complexity Low_complexity 1 28 0 2444 113 49 24 chr13 38636004 38636430 -63236739 - LTR23 LTR ERV1 0 437 1 26 30 0 0 chr13 38636905 38636938 -63236231 + AT_rich Low_complexity Low_complexity 1 33 0 1667 178 168 11 chr13 38637199 38637569 -63235600 + MSTA LTR MaLR 1 428 0 8732 171 12 20 chr13 38637571 38639162 -63234007 + MSTA-int LTR MaLR 3 1580 0 1742 176 122 13 chr13 38639162 38639548 -63233621 + MSTA LTR MaLR 1 428 0 850 274 111 33 chr13 38640786 38641148 -63232021 - LTR16A1 LTR ERVL -12 445 56 838 172 16 11 chr13 38641670 38641856 -63231313 - MER53 DNA DNA -2 187 1 1093 119 0 34 chr13 38643000 38643177 -63229992 - AluY SINE Alu 0 311 141 915 118 30 0 chr13 38643616 38643785 -63229384 + CT-rich Low_complexity Low_complexity 1 174 0 1188 61 11 22 chr13 38643785 38643965 -63229204 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 7085 43 6 0 chr13 38644269 38645147 -63228022 + L1PA4 LINE L1 5272 6154 -1 234 354 30 15 chr13 38645595 38645793 -63227376 + HAL1 LINE L1 1472 1672 -835 22 94 0 0 chr13 38646270 38646334 -63226835 + AT_rich Low_complexity Low_complexity 1 64 0 31 0 0 0 chr13 38647205 38647236 -63225933 + AT_rich Low_complexity Low_complexity 1 31 0 1130 185 5 40 chr13 38647805 38648027 -63225142 - AluJo SINE Alu -98 214 1 21 36 0 0 chr13 38649589 38649617 -63223552 + AT_rich Low_complexity Low_complexity 1 28 0 2083 129 0 0 chr13 38650840 38651157 -63222012 + AluSp SINE Alu 1 317 0 23 0 0 0 chr13 38651381 38651404 -63221765 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 38651901 38651922 -63221247 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 38652059 38652089 -63221080 + AT_rich Low_complexity Low_complexity 1 30 0 222 275 0 0 chr13 38654674 38654754 -63218415 + (TA)n Simple_repeat Simple_repeat 1 80 0 200 338 0 0 chr13 38654812 38654880 -63218289 + (CATATA)n Simple_repeat Simple_repeat 1 68 0 22 56 0 0 chr13 38655824 38655860 -63217309 + AT_rich Low_complexity Low_complexity 1 36 0 825 228 49 40 chr13 38656232 38656481 -63216688 + LTR12 LTR ERV1 208 489 -225 29 0 0 0 chr13 38656539 38656568 -63216601 + AT_rich Low_complexity Low_complexity 1 29 0 334 290 73 16 chr13 38657188 38657312 -63215857 + L2 LINE L2 3183 3313 0 3594 99 57 37 chr13 38657466 38658064 -63215105 - MER4B LTR ERV1 0 610 1 507 165 28 9 chr13 38658121 38658230 -63214939 + MLT2D LTR ERVL 5 115 -349 402 271 0 8 chr13 38658242 38658353 -63214816 - L1PB4 LINE L1 -6 6148 6045 3489 55 0 9 chr13 38658366 38658818 -63214351 - LTR7 LTR ERV1 -2 448 1 2512 82 45 13 chr13 38658818 38659198 -63213971 - HERVH LTR ERV1 0 7713 7322 1325 124 20 0 chr13 38659196 38659397 -63213772 - HERVH LTR ERV1 -1894 5819 5615 * 4314 142 1 1 chr13 38659428 38660090 -63213079 - HERVH LTR ERV1 -2564 5149 4488 3351 113 2 6 chr13 38660092 38660596 -63212573 - HERVH LTR ERV1 -3720 3993 3492 * 20411 92 53 26 chr13 38660586 38663788 -63209381 - HERVH LTR ERV1 -4423 3290 1 3324 72 11 7 chr13 38663790 38664236 -63208933 - LTR7 LTR ERV1 -2 448 1 1161 240 3 16 chr13 38664281 38664549 -63208620 + MLT2D LTR ERVL 111 469 -46 22 56 0 0 chr13 38664708 38664744 -63208425 + AT_rich Low_complexity Low_complexity 1 36 0 897 233 33 14 chr13 38664881 38665096 -63208073 + LTR1B LTR ERV1 1 219 -607 1979 152 28 60 chr13 38665101 38665587 -63207582 - MER4D LTR ERV1 -260 631 50 1237 189 114 4 chr13 38665574 38665828 -63207341 - MER49 LTR ERV1 -641 282 1 * 1394 231 42 68 chr13 38665855 38666354 -63206815 + MLT1D LTR MaLR 20 505 0 378 356 16 37 chr13 38666901 38667092 -63206077 - L2 LINE L2 0 3313 3127 3004 154 50 19 chr13 38667509 38668034 -63205135 + LTR38B LTR ERV1 9 555 -55 2071 107 24 3 chr13 38668034 38668332 -63204837 - AluSq SINE Alu -9 304 1 3004 154 50 19 chr13 38668332 38668382 -63204787 + LTR38B LTR ERV1 555 602 -8 227 287 11 75 chr13 38668519 38668613 -63204556 + MLT1J1 LTR MaLR 5 92 -354 1125 218 52 55 chr13 38669174 38669500 -63203669 - MLT1B LTR MaLR 0 390 66 38127 101 13 5 chr13 38669601 38674916 -63198253 - HERVL-A1 LTR ERVL -90 5564 207 2826 94 6 15 chr13 38674916 38675319 -63197850 - MLT2A1 LTR ERVL -37 517 1 28 48 0 0 chr13 38675681 38675723 -63197446 + AT_rich Low_complexity Low_complexity 1 42 0 279 340 102 16 chr13 38675862 38676353 -63196816 - L1M4 LINE L1 -1214 4932 4400 1859 153 7 0 chr13 38676382 38676669 -63196500 - AluSx SINE Alu 0 312 24 464 148 9 37 chr13 38676819 38676927 -63196242 - L1 LINE L1 -926 5220 5116 24 0 0 0 chr13 38677741 38677765 -63195404 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 38678093 38678115 -63195054 + AT_rich Low_complexity Low_complexity 1 22 0 34 79 0 0 chr13 38678963 38679039 -63194130 + AT_rich Low_complexity Low_complexity 1 76 0 222 236 10 18 chr13 38679931 38679994 -63193175 + GA-rich Low_complexity Low_complexity 4 49 0 24 77 0 0 chr13 38680792 38680844 -63192325 + AT_rich Low_complexity Low_complexity 1 52 0 184 345 92 17 chr13 38680954 38681073 -63192096 + MIR SINE MIR 76 203 -59 318 330 80 24 chr13 38681432 38681644 -63191525 + L2 LINE L2 3081 3304 -9 25 83 0 0 chr13 38682697 38682757 -63190412 + AT_rich Low_complexity Low_complexity 1 60 0 686 169 0 52 chr13 38682877 38683013 -63190156 - MLT1B LTR MaLR -261 129 1 239 298 131 0 chr13 38683183 38683267 -63189902 + MER5B DNA MER1_type 4 98 -80 485 301 45 49 chr13 38683666 38683932 -63189237 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 38684253 38684282 -63188887 + AT_rich Low_complexity Low_complexity 1 29 0 221 360 47 59 chr13 38685272 38685452 -63187717 - MIR SINE MIR 0 262 84 1967 160 8 39 chr13 38685452 38685839 -63187330 - THE1C LTR MaLR 0 375 1 221 360 47 59 chr13 38685839 38685911 -63187258 - MIR SINE MIR -178 84 13 967 226 5 18 chr13 38686061 38686278 -63186891 + MER58A DNA MER1_type 1 214 -10 696 264 61 4 chr13 38686346 38686592 -63186577 + MER69 DNA AcHobo 2102 2361 -165 3986 158 23 18 chr13 38688337 38688403 -63184766 + MER50 LTR ERV1 1 65 -669 1801 203 32 7 chr13 38688403 38688842 -63184327 - LTR7 LTR ERV1 0 450 1 3986 158 23 18 chr13 38688842 38689483 -63183686 + MER50 LTR ERV1 65 711 -23 26 50 0 0 chr13 38689562 38689602 -63183567 + AT_rich Low_complexity Low_complexity 1 40 0 3411 153 58 16 chr13 38689602 38690271 -63182898 - LTR34 LTR ERV1 -2 697 1 23 0 0 0 chr13 38690468 38690491 -63182678 + AT_rich Low_complexity Low_complexity 1 23 0 2194 167 98 43 chr13 38690706 38691270 -63181899 - LTR49 LTR ERV1 0 595 1 3851 168 25 17 chr13 38691961 38692676 -63180493 - MER72 LTR ERV1 0 722 2 225 333 58 0 chr13 38692765 38692852 -63180317 + L2 LINE L2 3208 3299 -14 33 25 0 0 chr13 38692875 38692915 -63180254 + AT_rich Low_complexity Low_complexity 1 40 0 2040 149 0 0 chr13 38692957 38693253 -63179916 + AluSq SINE Alu 1 296 -17 269 309 0 37 chr13 38693255 38693336 -63179833 + MIR SINE MIR 21 98 -164 281 254 34 51 chr13 38693549 38693667 -63179502 - MLT1I LTR MaLR -208 201 86 21 0 0 0 chr13 38694319 38694340 -63178829 + AT_rich Low_complexity Low_complexity 1 21 0 214 182 0 0 chr13 38695193 38695237 -63177932 + A-rich Low_complexity Low_complexity 3 46 0 4435 170 58 16 chr13 38695393 38696279 -63176890 - MER49 LTR ERV1 0 923 1 3078 133 10 2 chr13 38696688 38697198 -63175971 + L1MA4 LINE L1 5783 6296 -4 234 352 152 26 chr13 38697474 38697738 -63175431 + L2 LINE L2 846 1142 -2172 260 363 76 51 chr13 38697826 38697946 -63175223 + L2 LINE L2 1479 1594 -1720 2285 118 0 3 chr13 38697946 38698260 -63174909 - AluSp SINE Alu 0 313 1 260 363 76 51 chr13 38698260 38698574 -63174595 + L2 LINE L2 1594 1924 -1390 371 286 10 69 chr13 38698612 38698815 -63174354 + L2 LINE L2 3099 3289 -24 824 341 73 64 chr13 38698903 38699970 -63173199 + L2 LINE L2 1997 3078 -194 1979 139 33 0 chr13 38700037 38700339 -63172830 - AluSx SINE Alu 0 312 1 187 296 28 120 chr13 38700405 38700513 -63172656 + L2 LINE L2 3170 3267 -5 181 311 0 33 chr13 38701472 38701533 -63171636 - L3 LINE CR1 -70 1507 1449 26 64 0 0 chr13 38701543 38701590 -63171579 + AT_rich Low_complexity Low_complexity 1 47 0 443 289 105 87 chr13 38702459 38702839 -63170330 + HAL1 LINE L1 757 1143 -1364 32 26 0 0 chr13 38702845 38702884 -63170285 + AT_rich Low_complexity Low_complexity 1 39 0 2059 84 9 56 chr13 38703246 38703569 -63169600 + AluY SINE Alu 4 311 0 915 245 98 27 chr13 38704261 38704574 -63168595 - MLT1C LTR MaLR -26 441 128 2266 97 7 3 chr13 38704574 38704884 -63168285 + AluSx SINE Alu 2 312 0 915 245 98 27 chr13 38704884 38704990 -63168179 - MLT1C LTR MaLR -339 128 31 27 0 0 0 chr13 38705047 38705074 -63168095 + AT_rich Low_complexity Low_complexity 1 27 0 242 225 11 56 chr13 38705239 38705328 -63167841 + Charlie8 DNA MER1_type 712 796 -1621 31 0 0 0 chr13 38706458 38706489 -63166680 + AT_rich Low_complexity Low_complexity 1 31 0 300 300 56 22 chr13 38706835 38707015 -63166154 + L1M4 LINE L1 4974 5159 -987 1107 185 5 40 chr13 38707056 38707278 -63165891 - AluJo SINE Alu -98 214 1 180 0 0 0 chr13 38708158 38708178 -63164991 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 38708294 38708318 -63164851 + AT_rich Low_complexity Low_complexity 1 24 0 226 258 156 0 chr13 38708956 38709043 -63164126 + MIR SINE MIR 35 135 -73 28 48 0 0 chr13 38709182 38709224 -63163945 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 38709627 38709655 -63163514 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 38710718 38710758 -63162411 + AT_rich Low_complexity Low_complexity 1 40 0 366 42 0 0 chr13 38710909 38710957 -63162212 + AluY SINE Alu 1 48 -253 1082 280 25 12 chr13 38711244 38711565 -63161604 - L1MDb LINE L1 -6077 332 8 24 0 0 0 chr13 38711626 38711650 -63161519 + AT_rich Low_complexity Low_complexity 1 24 0 978 285 29 31 chr13 38712279 38712731 -63160438 + Charlie4a DNA MER1_type 40 490 -18 2080 126 3 7 chr13 38712784 38713085 -63160084 + AluSx SINE Alu 1 300 -12 824 307 54 37 chr13 38713089 38713574 -63159595 + HAL1 LINE L1 69 561 -1946 660 307 137 24 chr13 38714210 38714634 -63158535 + HAL1 LINE L1 615 1086 -1421 254 357 111 52 chr13 38714758 38715078 -63158091 - L3 LINE CR1 -185 1392 1033 552 255 107 20 chr13 38715078 38715274 -63157895 - MER58C DNA MER1_type -2 213 1 254 357 111 52 chr13 38715274 38715432 -63157737 - L3 LINE CR1 -544 1033 886 406 313 69 6 chr13 38715527 38715543 -63157626 - MER58B DNA MER1_type -2079 341 327 222 91 0 0 chr13 38715543 38715576 -63157593 + (TTA)n Simple_repeat Simple_repeat 1 33 0 406 313 69 6 chr13 38715576 38715719 -63157450 - MER58B DNA MER1_type -2093 327 172 23 0 0 0 chr13 38716262 38716285 -63156884 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 38716681 38716702 -63156467 + AT_rich Low_complexity Low_complexity 1 21 0 378 215 19 37 chr13 38716768 38716875 -63156294 - MER3 DNA MER1_type -14 195 91 21 36 0 0 chr13 38716899 38716927 -63156242 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr13 38717188 38717225 -63155944 + AT_rich Low_complexity Low_complexity 1 37 0 276 292 193 19 chr13 38717334 38717495 -63155674 + MER5A DNA MER1_type 1 189 0 902 239 67 122 chr13 38717980 38718260 -63154909 - MER67D LTR ERV1 -8 506 267 2027 133 89 9 chr13 38718260 38718597 -63154572 + THE1B LTR MaLR 1 364 0 902 239 67 122 chr13 38718597 38718851 -63154318 - MER67D LTR ERV1 -247 267 1 240 394 49 0 chr13 38719024 38719166 -63154003 - MIR3 SINE MIR -14 194 46 212 250 0 0 chr13 38720568 38720616 -63152553 + (CATA)n Simple_repeat Simple_repeat 3 50 0 22 35 0 0 chr13 38721594 38721623 -63151546 + AT_rich Low_complexity Low_complexity 1 29 0 1290 147 79 7 chr13 38722438 38722717 -63150452 - L1MA8 LINE L1 -1 6290 5992 1820 272 68 79 chr13 38722967 38725030 -63148139 + L1M2 LINE L1 1 1756 -5453 3557 58 0 2 chr13 38725037 38725486 -63147683 - LTR7 LTR ERV1 -2 448 1 2547 76 45 13 chr13 38725486 38725866 -63147303 - HERVH LTR ERV1 0 7713 7322 1327 121 20 0 chr13 38725866 38726065 -63147104 - HERVH LTR ERV1 -1896 5817 5615 4395 138 1 1 chr13 38726095 38726757 -63146412 - HERVH LTR ERV1 -2564 5149 4488 3407 112 4 2 chr13 38726759 38727260 -63145909 - HERVH LTR ERV1 -3720 3993 3492 1005 107 7 0 chr13 38727250 38727400 -63145769 - HERVH LTR ERV1 -4423 3290 3140 * 19832 99 7 34 chr13 38727379 38730456 -63142713 - HERVH LTR ERV1 -4718 2995 1 3694 40 0 2 chr13 38730458 38730907 -63142262 - LTR7 LTR ERV1 -2 448 1 1120 186 86 0 chr13 38730910 38731131 -63142038 + L1M2 LINE L1 1773 2012 -5197 1318 199 32 34 chr13 38731137 38731495 -63141674 - MER67C LTR ERV1 -249 265 1 21 0 0 0 chr13 38732025 38732046 -63141123 + AT_rich Low_complexity Low_complexity 1 21 0 327 146 0 0 chr13 38732069 38732124 -63141045 + (GGGA)n Simple_repeat Simple_repeat 2 56 0 2118 121 21 0 chr13 38732175 38732465 -63140704 + AluSg SINE Alu 1 296 -14 1170 186 12 12 chr13 38732729 38732987 -63140182 - L1MA4A LINE L1 -362 5941 5684 1986 75 14 4 chr13 38732990 38733269 -63139900 + MER41B LTR ERV1 1 282 -353 219 36 0 0 chr13 38733409 38733437 -63139732 + (GA)n Simple_repeat Simple_repeat 2 29 0 1518 190 39 3 chr13 38734440 38734724 -63138445 - AluSx SINE Alu -18 294 1 27 68 0 34 chr13 38735457 38735518 -63137651 + AT_rich Low_complexity Low_complexity 1 60 -25 2449 71 0 0 chr13 38735518 38735828 -63137341 - AluY SINE Alu -1 310 1 27 68 0 34 chr13 38735828 38735854 -63137315 + AT_rich Low_complexity Low_complexity 60 85 0 273 288 0 0 chr13 38735954 38736013 -63137156 - MIR SINE MIR -190 72 14 303 291 10 118 chr13 38736148 38736351 -63136818 - MIR SINE MIR -71 191 11 31 26 0 0 chr13 38736797 38736835 -63136334 + AT_rich Low_complexity Low_complexity 1 38 0 27 68 0 34 chr13 38737750 38737811 -63135358 + AT_rich Low_complexity Low_complexity 1 60 -25 2449 71 0 0 chr13 38737811 38738121 -63135048 - AluY SINE Alu -1 310 1 27 68 0 34 chr13 38738121 38738147 -63135022 + AT_rich Low_complexity Low_complexity 60 85 0 273 288 0 0 chr13 38738247 38738306 -63134863 - MIR SINE MIR -190 72 14 303 291 10 118 chr13 38738441 38738644 -63134525 - MIR SINE MIR -71 191 11 31 26 0 0 chr13 38739089 38739127 -63134042 + AT_rich Low_complexity Low_complexity 1 38 0 2390 59 0 10 chr13 38739954 38740260 -63132909 + AluY SINE Alu 1 303 -8 25 31 0 0 chr13 38740315 38740347 -63132822 + AT_rich Low_complexity Low_complexity 1 32 0 504 282 239 31 chr13 38740363 38740937 -63132232 + L1M4 LINE L1 3067 3759 -2387 2094 139 24 3 chr13 38740938 38741277 -63131892 + L1PA16 LINE L1 5592 5937 -229 1149 264 164 78 chr13 38741285 38742288 -63130881 + MER52A LTR ERV1 666 1755 0 983 198 75 0 chr13 38742290 38742502 -63130667 + L1PA16 LINE L1 5937 6164 -2 340 311 205 15 chr13 38742508 38742839 -63130330 + L1M4 LINE L1 3778 4171 -1975 21 0 0 0 chr13 38742844 38742865 -63130304 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 38742989 38743018 -63130151 + AT_rich Low_complexity Low_complexity 1 29 0 200 320 40 0 chr13 38743686 38743736 -63129433 + L3b LINE CR1 1520 1571 -12 25 0 0 0 chr13 38744286 38744311 -63128858 + AT_rich Low_complexity Low_complexity 1 25 0 472 284 158 5 chr13 38744327 38744517 -63128652 + MER20 DNA MER1_type 1 219 0 208 83 42 21 chr13 38744968 38745016 -63128153 + T-rich Low_complexity Low_complexity 5 53 0 1910 148 3 3 chr13 38745216 38745523 -63127646 + AluSq SINE Alu 1 307 0 245 203 34 0 chr13 38746048 38746107 -63127062 - MLT1A1 LTR MaLR -5 360 300 313 132 59 44 chr13 38746579 38746647 -63126522 + MER67D LTR ERV1 445 513 -1 1680 217 14 28 chr13 38746676 38747040 -63126129 - MLT1A1 LTR MaLR -2 363 5 31 68 0 0 chr13 38748401 38748460 -63124709 + AT_rich Low_complexity Low_complexity 1 59 0 246 282 60 23 chr13 38749877 38749969 -63123200 - MIR SINE MIR -63 145 59 23 54 0 0 chr13 38750426 38750463 -63122706 + AT_rich Low_complexity Low_complexity 1 37 0 3862 175 64 25 chr13 38751562 38752389 -63120780 + MER6 DNA MER2_type 4 862 -3 25 0 0 0 chr13 38752441 38752466 -63120703 + AT_rich Low_complexity Low_complexity 1 25 0 244 304 154 61 chr13 38754299 38754513 -63118656 - MIR SINE MIR -1 261 28 508 172 8 8 chr13 38754814 38754936 -63118233 + (TA)n Simple_repeat Simple_repeat 1 122 0 677 289 60 54 chr13 38756104 38756643 -63116526 - MLT1G3 LTR MaLR 0 585 14 24 32 0 0 chr13 38757285 38757316 -63115853 + AT_rich Low_complexity Low_complexity 1 31 0 348 305 0 8 chr13 38757672 38757803 -63115366 - MLT1-int LTR MaLR -814 557 428 14143 151 15 15 chr13 38758207 38759474 -63113695 + Tigger1 DNA MER2_type 1 1267 -1151 2057 136 0 0 chr13 38759474 38759784 -63113385 - L1PA16 LINE L1 -9 6157 5848 14143 151 15 15 chr13 38759784 38759894 -63113275 + Tigger1 DNA MER2_type 1267 1376 -1042 4140 166 72 49 chr13 38759894 38760941 -63112228 - MER11C LTR ERVK 0 1071 1 14143 151 15 15 chr13 38760941 38761981 -63111188 + Tigger1 DNA MER2_type 1376 2418 0 553 285 8 73 chr13 38762136 38762382 -63110787 - MLT1G1 LTR MaLR -361 234 5 248 232 0 14 chr13 38765228 38765297 -63107872 + MLT1D LTR MaLR 180 247 -258 653 247 1 13 chr13 38765313 38765479 -63107690 + MLT1D LTR MaLR 357 505 0 5685 169 9 18 chr13 38765585 38766257 -63106912 - L1PA15 LINE L1 -31 6134 5458 1905 149 3 10 chr13 38766257 38766566 -63106603 - AluSg SINE Alu -3 307 1 5685 169 9 18 chr13 38766566 38766843 -63106326 - L1PA15 LINE L1 -707 5458 5180 1247 139 65 0 chr13 38766843 38767058 -63106111 - MER30 DNA MER1_type 0 230 2 5685 169 9 18 chr13 38767058 38768038 -63105131 - L1PA15 LINE L1 -985 5180 4228 22 0 0 0 chr13 38768204 38768226 -63104943 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 38769417 38769439 -63103730 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2219 69 7 0 chr13 38769441 38769717 -63103452 - AluY SINE Alu -33 278 1 1548 204 22 18 chr13 38769969 38770414 -63102755 - LTR7 LTR ERV1 -2 448 2 1047 252 3 17 chr13 38770466 38770729 -63102440 + MLT2D LTR ERVL 116 469 -46 22 56 0 0 chr13 38770888 38770924 -63102245 + AT_rich Low_complexity Low_complexity 1 36 0 861 237 33 14 chr13 38771060 38771275 -63101894 + LTR1B LTR ERV1 1 219 -607 1940 141 22 150 chr13 38771280 38772007 -63101162 - MER4D LTR ERV1 -260 631 1 1313 237 44 66 chr13 38772034 38772531 -63100638 + MLT1D LTR MaLR 20 505 0 250 363 12 50 chr13 38773079 38773239 -63099930 - L2 LINE L2 0 3313 3160 2182 246 31 12 chr13 38773507 38774079 -63099090 + Charlie8 DNA MER1_type 1522 2104 -313 22 70 0 0 chr13 38774325 38774368 -63098801 + AT_rich Low_complexity Low_complexity 1 43 0 1242 220 18 32 chr13 38774383 38774520 -63098649 - AluJb SINE Alu 0 321 184 1916 153 82 15 chr13 38774520 38774861 -63098308 + THE1B LTR MaLR 1 364 0 1242 220 18 32 chr13 38774861 38775043 -63098126 - AluJb SINE Alu -137 184 6 238 293 0 0 chr13 38775050 38775125 -63098044 + Charlie8 DNA MER1_type 2341 2415 -2 14478 187 28 35 chr13 38775771 38776114 -63097055 + L1M1 LINE L1 1 345 -7220 425 102 0 0 chr13 38776114 38776173 -63096996 + AluJ/FLAM SINE Alu 1 59 -253 14478 187 28 35 chr13 38776173 38778626 -63094543 + L1M1 LINE L1 345 2837 -4728 216 0 0 0 chr13 38778626 38778650 -63094519 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 14478 187 28 35 chr13 38778650 38778695 -63094474 + L1M1 LINE L1 2837 2881 -4684 463 144 56 0 chr13 38778724 38778814 -63094355 + L1MA1 LINE L1 6206 6300 -2 1761 301 57 21 chr13 38779410 38780243 -63092926 - L1MC4 LINE L1 -137 7905 6867 2030 126 0 17 chr13 38780243 38780545 -63092624 - AluSx SINE Alu -15 297 1 1761 301 57 21 chr13 38780545 38780878 -63092291 - L1MC4 LINE L1 -1175 6867 6548 514 307 74 20 chr13 38781400 38781644 -63091525 + MIR SINE MIR 6 262 0 22 0 0 0 chr13 38781824 38781846 -63091323 + AT_rich Low_complexity Low_complexity 1 22 0 264 316 86 0 chr13 38783312 38783429 -63089740 - L2 LINE L2 -6 3307 3181 224 310 35 11 chr13 38783414 38783501 -63089668 + MIR SINE MIR 76 164 -98 * 891 53 0 0 chr13 38784100 38784213 -63088956 + (TTC)n Simple_repeat Simple_repeat 2 114 0 467 239 17 62 chr13 38784427 38784603 -63088566 - MLT1B LTR MaLR -217 173 6 239 298 131 0 chr13 38784778 38784862 -63088307 + MER5B DNA MER1_type 4 98 -80 502 297 45 49 chr13 38785261 38785527 -63087642 + MLT1J LTR MaLR 2 266 -245 22 35 0 0 chr13 38785848 38785877 -63087292 + AT_rich Low_complexity Low_complexity 1 29 0 1933 170 8 35 chr13 38787057 38787428 -63085741 - THE1C LTR MaLR 0 375 15 455 283 0 23 chr13 38787692 38787869 -63085300 + MER58A DNA MER1_type 27 199 -25 7024 95 12 8 chr13 38788012 38789068 -63084101 - L1P LINE L1 -2336 3810 2750 252 243 27 14 chr13 38789064 38789138 -63084031 - L1MCc LINE L1 -6331 92 18 * 789 206 25 5 chr13 38789758 38789962 -63083207 - L1MA4 LINE L1 0 6300 6093 195 175 50 0 chr13 38789987 38790027 -63083142 + L2 LINE L2 3272 3313 0 2086 197 21 88 chr13 38790194 38790773 -63082396 - MLT2B3 LTR ERVL 0 554 15 1894 79 9 0 chr13 38790854 38791281 -63081888 + L1PA8 LINE L1 5670 6170 -2 988 195 6 0 chr13 38791393 38791562 -63081607 - AluSx SINE Alu -140 172 3 200 325 35 26 chr13 38791952 38792066 -63081103 - MIR SINE MIR -32 230 116 320 330 200 5 chr13 38792231 38792431 -63080738 + MIR SINE MIR 12 250 -12 23 33 0 0 chr13 38792750 38792780 -63080389 + AT_rich Low_complexity Low_complexity 1 30 0 245 212 0 15 chr13 38793737 38793803 -63079366 + (TA)n Simple_repeat Simple_repeat 2 66 0 390 267 0 0 chr13 38793803 38793893 -63079276 - L1MC4 LINE L1 -1339 6703 6614 4582 163 16 32 chr13 38796236 38796904 -63076265 + L1PB4 LINE L1 5198 5875 -281 243 0 0 0 chr13 38796904 38796931 -63076238 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1830 139 0 18 chr13 38796937 38797218 -63075951 - AluSx SINE Alu -36 276 1 4582 163 16 32 chr13 38797218 38797512 -63075657 + L1PB4 LINE L1 5880 6153 -3 198 0 0 0 chr13 38797840 38797862 -63075307 + (A)n Simple_repeat Simple_repeat 1 22 0 643 285 29 84 chr13 38798001 38798498 -63074671 + L1ME LINE L1 278 749 -5321 1364 286 34 79 chr13 38798554 38799485 -63073684 + L1M4 LINE L1 3837 4733 -1413 775 275 62 47 chr13 38800717 38801165 -63072004 - L1MA7 LINE L1 -64 6227 5773 6849 62 8 0 chr13 38801266 38802687 -63070482 + L1PA7 LINE L1 4722 6149 -5 836 298 19 28 chr13 38802722 38803044 -63070125 + L1MCc LINE L1 99 417 -6006 41 72 0 0 chr13 38803095 38803178 -63069991 + AT_rich Low_complexity Low_complexity 1 83 0 40 79 0 0 chr13 38803306 38803395 -63069774 + AT_rich Low_complexity Low_complexity 1 89 0 351 206 43 22 chr13 38804143 38804235 -63068934 + L1MB7 LINE L1 6080 6173 -11 386 275 285 0 chr13 38804382 38804575 -63068594 + MIR SINE MIR 15 262 0 1759 223 69 13 chr13 38804616 38805168 -63068001 - L1MD3 LINE L1 -237 7758 6975 761 260 11 6 chr13 38805168 38805349 -63067820 + MLT1D LTR MaLR 1 182 -323 1145 240 31 3 chr13 38805401 38805688 -63067481 - L1ME1 LINE L1 -206 5960 5666 1410 243 68 138 chr13 38806029 38806614 -63066555 + MLT1E LTR MaLR 45 591 -2 253 268 278 0 chr13 38806624 38806721 -63066448 + MER91C DNA MER1_type 12 135 -5 321 338 40 27 chr13 38806886 38807034 -63066135 - MIR3 SINE MIR -31 177 60 625 245 14 0 chr13 38807335 38807482 -63065687 + LTR40a LTR ERVL 3 151 -368 1346 244 89 36 chr13 38807596 38808125 -63065044 - L1ME1 LINE L1 -259 5907 5351 234 186 0 0 chr13 38808159 38808202 -63064967 + L1 LINE L1 4172 4214 -1932 21 36 0 0 chr13 38808257 38808285 -63064884 + AT_rich Low_complexity Low_complexity 1 28 0 8958 204 30 26 chr13 38808289 38810727 -63062442 - L1P5 LINE L1 -667 5484 3047 2044 233 26 4 chr13 38810737 38811277 -63061892 - L1M2 LINE L1 -4029 2820 2269 1327 123 199 36 chr13 38813547 38813848 -63059321 - MSTA LTR MaLR 0 428 79 595 235 48 119 chr13 38814106 38814527 -63058642 - L1ME1 LINE L1 -1906 4240 3850 702 244 33 58 chr13 38814527 38814819 -63058350 + L1MCa LINE L1 1799 2189 -4400 3649 229 57 52 chr13 38814841 38816014 -63057155 + L1MC3 LINE L1 6567 7745 -40 237 193 11 23 chr13 38817054 38817142 -63056027 + CT-rich Low_complexity Low_complexity 1 87 0 21 82 0 0 chr13 38817199 38817248 -63055921 + AT_rich Low_complexity Low_complexity 1 49 0 277 317 67 8 chr13 38817673 38817793 -63055376 - L2 LINE L2 0 3313 3187 1691 128 92 14 chr13 38819697 38819979 -63053190 - AluSx SINE Alu -8 304 1 2908 236 83 48 chr13 38821358 38822517 -63050652 + L1MCa LINE L1 9 1180 -4865 636 320 51 27 chr13 38822945 38823201 -63049968 - MIR SINE MIR 0 262 1 637 119 20 0 chr13 38823373 38823474 -63049695 - AluSg/x SINE Alu -13 297 195 25 0 0 0 chr13 38824702 38824727 -63048442 + AT_rich Low_complexity Low_complexity 1 25 0 1393 244 121 26 chr13 38825813 38826276 -63046893 + LTR40a LTR ERVL 1 507 -12 189 74 0 0 chr13 38827857 38827884 -63045285 + (CA)n Simple_repeat Simple_repeat 2 28 0 1373 275 19 123 chr13 38879484 38880383 -62992786 + MSTC-int LTR MaLR 259 1063 -308 1612 59 10 0 chr13 38880383 38880586 -62992583 - AluY SINE Alu -4 307 103 243 160 32 0 chr13 38880689 38880783 -62992386 + (TA)n Simple_repeat Simple_repeat 1 97 0 884 150 69 17 chr13 38880784 38880957 -62992212 + Tigger1 DNA MER2_type 2236 2417 -1 631 293 55 37 chr13 38881027 38881409 -62991760 - MER69 DNA AcHobo -251 2275 1887 180 0 0 0 chr13 38881699 38881719 -62991450 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1370 197 56 3 chr13 38881739 38882023 -62991146 - AluJo SINE Alu -13 299 1 341 215 0 0 chr13 38882304 38882369 -62990800 - MER69 DNA AcHobo -2457 69 5 21 36 0 0 chr13 38882405 38882433 -62990736 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 38882497 38882527 -62990642 + AT_rich Low_complexity Low_complexity 1 30 0 827 160 0 26 chr13 38882734 38882890 -62990279 + AluSg/x SINE Alu 159 310 0 201 121 0 0 chr13 38882890 38882923 -62990246 + (TA)n Simple_repeat Simple_repeat 1 33 0 264 132 57 19 chr13 38883129 38883235 -62989934 + (TTATA)n Simple_repeat Simple_repeat 5 114 0 25 90 0 0 chr13 38883388 38883455 -62989714 + AT_rich Low_complexity Low_complexity 1 67 0 29 60 0 0 chr13 38883944 38883994 -62989175 + AT_rich Low_complexity Low_complexity 1 50 0 640 276 97 17 chr13 38885092 38885443 -62987726 + L1M4 LINE L1 4899 5277 -869 349 98 0 0 chr13 38885444 38885495 -62987674 - AluSc SINE Alu -4 295 245 8891 152 65 12 chr13 38885607 38886294 -62986875 - Tigger1 DNA MER2_type -187 2231 1582 2076 180 7 53 chr13 38886294 38886743 -62986426 + MSTC LTR MaLR 1 428 0 8891 152 65 12 chr13 38886743 38887664 -62985505 - Tigger1 DNA MER2_type -836 1582 538 1226 200 105 24 chr13 38887666 38887961 -62985208 - Tigger1 DNA MER2_type -2099 319 1 219 36 0 0 chr13 38888356 38888384 -62984785 + (A)n Simple_repeat Simple_repeat 1 28 0 1178 298 129 11 chr13 38888776 38888920 -62984249 - L1MEc LINE L1 -2291 3924 3798 1408 229 26 7 chr13 38888920 38889226 -62983943 - AluJo SINE Alu 0 312 1 1178 298 129 11 chr13 38889226 38889967 -62983202 - L1MEc LINE L1 -2417 3798 2935 934 291 63 15 chr13 38889965 38890564 -62982605 - L1MEc LINE L1 -3616 2599 2019 * 331 311 44 0 chr13 38890977 38891067 -62982102 - AluJ/FLAM SINE Alu -207 95 2 238 267 0 0 chr13 38891076 38891136 -62982033 - L1 LINE L1 -2471 3675 3616 217 156 0 22 chr13 38891263 38891308 -62981861 + T-rich Low_complexity Low_complexity 5 48 0 21 0 0 0 chr13 38891827 38891848 -62981321 + AT_rich Low_complexity Low_complexity 1 21 0 2115 105 0 7 chr13 38891848 38892174 -62980995 + AluSp SINE Alu 1 324 0 639 205 18 0 chr13 38892174 38892312 -62980857 - L1PB4 LINE L1 -8 6158 6016 183 234 43 21 chr13 38892545 38892592 -62980577 + MER5A DNA MER1_type 122 169 -20 405 0 0 0 chr13 38893024 38893069 -62980100 + (TG)n Simple_repeat Simple_repeat 1 45 0 603 333 12 4 chr13 38893539 38893788 -62979381 - L1ME LINE L1 -342 5779 5529 211 327 71 9 chr13 38894343 38894456 -62978713 + L2 LINE L2 3153 3272 0 839 101 0 0 chr13 38895178 38895297 -62977872 - AluJb SINE Alu -189 123 5 731 116 93 16 chr13 38896586 38896715 -62976454 + LTR1 LTR ERV1 1 139 -646 51 83 0 0 chr13 38896721 38896842 -62976327 + AT_rich Low_complexity Low_complexity 1 121 0 1853 262 60 49 chr13 38897024 38897389 -62975780 - L1ME1 LINE L1 -5 6161 5802 264 30 0 0 chr13 38897389 38897422 -62975747 + (TC)n Simple_repeat Simple_repeat 2 34 0 1853 262 60 49 chr13 38897422 38898787 -62974382 - L1ME1 LINE L1 -364 5802 4419 340 311 82 7 chr13 38898928 38899063 -62974106 - MIR SINE MIR 0 262 118 263 281 22 0 chr13 38899203 38899292 -62973877 - L1MC4 LINE L1 -1337 6705 6615 317 247 49 37 chr13 38899323 38899485 -62973684 + L1ME2 LINE L1 5101 5264 -882 1522 281 86 28 chr13 38899496 38899843 -62973326 + L1ME2 LINE L1 5354 5679 -485 1877 154 76 15 chr13 38899843 38900186 -62972983 - THE1B LTR MaLR 0 364 1 1522 281 86 28 chr13 38900186 38900595 -62972574 + L1ME2 LINE L1 5679 6154 -10 229 226 60 24 chr13 38901297 38901381 -62971788 + HAL1b LINE L1 973 1059 -289 26 30 0 0 chr13 38901625 38901658 -62971511 + AT_rich Low_complexity Low_complexity 1 33 0 27 29 0 0 chr13 38901735 38901769 -62971400 + AT_rich Low_complexity Low_complexity 1 34 0 249 266 0 0 chr13 38902063 38902127 -62971042 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 788 196 21 0 chr13 38902902 38903045 -62970124 + MER61D LTR ERV1 338 483 -18 243 88 0 0 chr13 38903732 38903766 -62969403 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 276 379 91 16 chr13 38903865 38904118 -62969051 + L2 LINE L2 2996 3267 -5 5538 189 15 33 chr13 38904618 38905413 -62967756 - L1PB3 LINE L1 0 6154 5346 2235 104 0 28 chr13 38905413 38905730 -62967439 + AluSp SINE Alu 1 308 -5 5538 189 15 33 chr13 38905730 38907114 -62966055 - L1PB3 LINE L1 -808 5346 3990 936 253 12 44 chr13 38908039 38908379 -62964790 + L1MB5 LINE L1 4811 5139 -1007 1496 201 46 110 chr13 38908381 38908818 -62964351 + L1MB5 LINE L1 5221 5599 -575 1544 201 7 3 chr13 38908818 38909106 -62964063 + AluJb SINE Alu 1 289 -23 1496 201 46 110 chr13 38909106 38909355 -62963814 + L1MB5 LINE L1 5599 5862 -312 1217 255 25 3 chr13 38909353 38909714 -62963455 + L1M4 LINE L1 4191 4559 -1587 * 442 239 8 39 chr13 38909738 38909868 -62963301 + L1MB5 LINE L1 6049 6174 0 210 37 0 0 chr13 38910431 38910458 -62962711 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1525 248 48 3 chr13 38910513 38910844 -62962325 + MLT1A1 LTR MaLR 14 359 -6 203 0 37 0 chr13 38911086 38911113 -62962056 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 37 104 0 0 chr13 38911341 38911476 -62961693 + AT_rich Low_complexity Low_complexity 1 135 0 491 265 160 8 chr13 38912455 38912723 -62960446 - MER5C DNA MER1_type 0 324 16 715 246 115 35 chr13 38912810 38913140 -62960029 + L1MB7 LINE L1 2534 2909 -3237 1942 170 3 0 chr13 38913140 38913451 -62959718 + AluSx SINE Alu 1 312 0 715 246 115 35 chr13 38913451 38913555 -62959614 + L1MB7 LINE L1 2909 3003 -3143 1534 261 55 16 chr13 38913563 38913778 -62959391 + L1MB7 LINE L1 4686 4891 -1255 2092 165 5 19 chr13 38913778 38914147 -62959022 + THE1B LTR MaLR 1 364 0 1534 261 55 16 chr13 38914147 38914480 -62958689 + L1MB7 LINE L1 4891 5255 -891 875 204 59 50 chr13 38914538 38914758 -62958411 + Tigger2 DNA MER2_type 2496 2717 -1 365 143 0 0 chr13 38914759 38914815 -62958354 + MER3 DNA MER1_type 154 209 0 264 188 0 0 chr13 38914773 38914821 -62958348 - MER3 DNA MER1_type -120 89 42 * 1597 234 27 0 chr13 38915009 38915346 -62957823 - MLT1A1 LTR MaLR -7 358 13 282 207 21 147 chr13 38915417 38915594 -62957575 + MIR3 SINE MIR 33 192 -24 219 333 39 10 chr13 38917240 38917342 -62955827 - MIR SINE MIR -6 256 152 692 210 4 6 chr13 38917344 38917591 -62955578 - MLT1A1 LTR MaLR -2 363 61 330 303 17 50 chr13 38917744 38917863 -62955306 + MIR SINE MIR 33 147 -115 3684 208 35 9 chr13 38917863 38918703 -62954466 + L1MB7 LINE L1 5305 6165 -19 554 260 83 27 chr13 38918781 38919119 -62954050 + L1MC5 LINE L1 7506 7862 -99 25 51 0 0 chr13 38919848 38919887 -62953282 + AT_rich Low_complexity Low_complexity 1 39 0 207 114 0 0 chr13 38920333 38920368 -62952801 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 512 325 72 29 chr13 38920936 38921453 -62951716 + MLT1H1 LTR MaLR 1 555 0 431 312 40 15 chr13 38921802 38922001 -62951168 - LTR68 LTR ERV1 -300 440 237 21 0 0 0 chr13 38922406 38922427 -62950742 + AT_rich Low_complexity Low_complexity 1 21 0 388 148 16 0 chr13 38922433 38922494 -62950675 + AluS SINE Alu 1 62 -237 633 326 60 25 chr13 38922624 38922940 -62950229 + L1MB8 LINE L1 521 847 -6012 273 305 19 38 chr13 38923286 38923391 -62949778 + L1MB8 LINE L1 918 1020 -5835 1191 265 93 57 chr13 38923561 38924717 -62948452 + L1MB8 LINE L1 1205 2388 -4571 22 0 0 0 chr13 38924769 38924791 -62948378 + AT_rich Low_complexity Low_complexity 1 22 0 466 255 60 52 chr13 38925341 38925688 -62947481 + L1MB8 LINE L1 2911 3222 -3735 2024 265 97 16 chr13 38925701 38926053 -62947116 + L1MB8 LINE L1 3757 4079 -2878 306 0 0 0 chr13 38926053 38926087 -62947082 + (TG)n Simple_repeat Simple_repeat 2 35 0 2024 265 97 16 chr13 38926087 38926853 -62946316 + L1MB8 LINE L1 4079 4965 -1992 2070 213 51 25 chr13 38926856 38927406 -62945763 + L1MB8 LINE L1 6426 6989 0 27 29 0 0 chr13 38928175 38928209 -62944960 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr13 38929007 38929036 -62944133 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr13 38929188 38929237 -62943932 + AT_rich Low_complexity Low_complexity 1 49 0 183 114 0 0 chr13 38929599 38929634 -62943535 + (TC)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 38929713 38929737 -62943432 + AT_rich Low_complexity Low_complexity 1 24 0 2286 88 0 7 chr13 38930411 38930716 -62942453 - AluY SINE Alu -8 303 1 316 184 85 0 chr13 38931052 38931193 -62941976 + (TA)n Simple_repeat Simple_repeat 1 153 0 21 36 0 0 chr13 38932389 38932417 -62940752 + AT_rich Low_complexity Low_complexity 1 28 0 2891 247 77 50 chr13 38932417 38933448 -62939721 - HERVL74 LTR ERVL -2537 3148 2090 2716 230 45 15 chr13 38933584 38934232 -62938937 - HERVL74 LTR ERVL -3602 2083 1417 1488 230 34 48 chr13 38934310 38934784 -62938385 + MLT1C LTR MaLR 1 467 0 825 181 9 16 chr13 38934806 38934976 -62938193 - MLT1A1 LTR MaLR -43 424 153 422 241 62 31 chr13 38935100 38935262 -62937907 - HERVL74 LTR ERVL -2544 1012 846 2546 268 36 6 chr13 38935285 38935926 -62937243 - HERVL74 LTR ERVL -2883 673 14 592 187 12 90 chr13 38936076 38936242 -62936927 - MLT1A1 LTR MaLR -467 159 7 894 264 12 72 chr13 38936251 38936584 -62936585 - MLT1A1-int LTR MaLR 0 1371 1059 1053 87 12 25 chr13 38936588 38936749 -62936420 + AluY SINE Alu 1 159 -152 622 221 45 0 chr13 38936856 38937010 -62936159 - MLT1A1-int LTR MaLR -1210 161 1 292 234 0 13 chr13 38937235 38937312 -62935857 - L1MEd LINE L1 -5365 754 679 4181 157 91 42 chr13 38937394 38938247 -62934922 + MER4D LTR ERV1 1 895 -8 317 326 101 14 chr13 38938466 38938604 -62934565 - L1MEd LINE L1 -5954 165 16 1726 133 28 0 chr13 38939516 38939764 -62933405 + AluSq SINE Alu 44 298 -15 336 283 59 27 chr13 38939961 38940148 -62933021 - L1MC/D LINE L1 -2066 5742 5550 443 330 28 23 chr13 38940553 38940729 -62932440 - MIR SINE MIR -84 178 2 184 284 81 27 chr13 38940786 38940860 -62932309 - L2 LINE L2 -2671 643 566 2042 118 0 4 chr13 38940860 38941140 -62932029 + AluSq SINE Alu 3 281 -32 1176 180 15 0 chr13 38941956 38942162 -62931007 - Tigger5 DNA MER2_type -1 2322 2114 267 292 31 31 chr13 38942178 38942274 -62930895 - Tigger5 DNA MER2_type -2227 96 1 30 45 0 0 chr13 38942281 38942325 -62930844 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr13 38942518 38942554 -62930615 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr13 38942779 38942816 -62930353 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr13 38942948 38942981 -62930188 + AT_rich Low_complexity Low_complexity 1 33 0 2446 151 48 5 chr13 38943158 38943574 -62929595 + MER61C LTR ERV1 1 434 0 12509 163 18 108 chr13 38943877 38947136 -62926033 + L1P LINE L1 3 2968 -3178 889 244 62 124 chr13 38947236 38947866 -62925303 + L1ME2 LINE L1 5386 5976 -188 977 257 196 36 chr13 38948086 38948669 -62924500 + L1MC4 LINE L1 6418 7093 -949 1015 280 152 26 chr13 38948707 38949436 -62923733 + L1MC4 LINE L1 7213 8033 -9 246 201 14 29 chr13 38951562 38951642 -62921527 + A-rich Low_complexity Low_complexity 2 137 0 22 0 0 0 chr13 38951648 38951670 -62921499 + AT_rich Low_complexity Low_complexity 1 22 0 182 278 19 19 chr13 38951670 38951724 -62921445 + L2 LINE L2 3209 3262 -10 23 54 0 0 chr13 38951741 38951778 -62921391 + AT_rich Low_complexity Low_complexity 1 37 0 252 0 0 0 chr13 38951811 38951839 -62921330 + (TG)n Simple_repeat Simple_repeat 1 28 0 247 255 104 108 chr13 38952707 38952958 -62920211 + MLT1J LTR MaLR 62 311 -200 22 35 0 0 chr13 38952996 38953025 -62920144 + AT_rich Low_complexity Low_complexity 1 29 0 236 321 0 0 chr13 38953134 38953215 -62919954 - MLT1J LTR MaLR -25 486 406 777 102 25 0 chr13 38953821 38953939 -62919230 + L1P3 LINE L1 5647 5767 -405 856 115 18 12 chr13 38954012 38954177 -62918992 + GA-rich Low_complexity Low_complexity 2 167 0 480 115 21 21 chr13 38954193 38954289 -62918880 + GA-rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr13 38954436 38954460 -62918709 + AT_rich Low_complexity Low_complexity 1 24 0 417 284 40 34 chr13 38954877 38955025 -62918144 + MLT1L LTR MaLR 43 191 -424 701 229 34 34 chr13 38955565 38955770 -62917399 - MER3 DNA MER1_type -4 205 1 691 207 46 23 chr13 38955805 38955979 -62917190 + MER58A DNA MER1_type 47 224 0 201 274 42 95 chr13 38956754 38956849 -62916320 + MIR SINE MIR 9 98 -164 1119 140 9 5 chr13 38957294 38957502 -62915667 - L1M2 LINE L1 -571 5720 5508 256 326 0 0 chr13 38957511 38957600 -62915569 + MIR SINE MIR 164 252 -10 3187 193 23 51 chr13 38957772 38958561 -62914608 - L1MA10 LINE L1 -2 6332 5566 332 284 32 0 chr13 38958567 38958662 -62914507 - MER52A LTR ERV1 -3 1752 1655 32387 152 37 31 chr13 38958663 38958883 -62914286 - MER52-int LTR ERV1 -6 7085 6868 3131 102 25 0 chr13 38958883 38959325 -62913844 - MLT2A2 LTR ERVL 0 453 1 32387 152 37 31 chr13 38959325 38959842 -62913327 - MER52-int LTR ERV1 -223 6868 6356 1974 150 20 0 chr13 38959842 38960142 -62913027 + AluSg SINE Alu 3 308 -2 32387 152 37 31 chr13 38960142 38961778 -62911391 - MER52-int LTR ERV1 -735 6356 4732 2193 106 0 31 chr13 38961778 38962099 -62911070 - AluY SINE Alu 0 311 1 32387 152 37 31 chr13 38962099 38962661 -62910508 - MER52-int LTR ERV1 -2359 4732 4175 2255 135 0 6 chr13 38962661 38963016 -62910153 + THE1A LTR MaLR 3 355 0 10634 113 30 0 chr13 38963016 38964550 -62908619 + THE1A-int LTR MaLR 1 1580 0 2212 136 14 17 chr13 38964550 38964904 -62908265 + THE1A LTR MaLR 1 353 -2 32387 152 37 31 chr13 38964904 38965149 -62908020 - MER52-int LTR ERV1 -2916 4175 3933 1867 174 0 3 chr13 38965149 38965454 -62907715 - AluSx SINE Alu -3 309 6 32387 152 37 31 chr13 38965454 38968004 -62905165 - MER52-int LTR ERV1 -3158 3933 1313 837 141 34 102 chr13 38968019 38968196 -62904973 - MER52-int LTR ERV1 -5974 1117 953 * 6469 175 34 47 chr13 38968190 38968403 -62904766 - MER52-int LTR ERV1 -5789 1302 1088 2331 153 3 0 chr13 38968403 38968775 -62904394 - THE1C LTR MaLR -2 373 1 6469 175 34 47 chr13 38968775 38969868 -62903301 - MER52-int LTR ERV1 -6003 1088 30 635 282 54 76 chr13 38969873 38970688 -62902481 - MER52A LTR ERV1 0 1755 276 1263 319 65 42 chr13 38971208 38972372 -62900797 - HERVI LTR ERV1 -138 7647 3377 328 269 25 25 chr13 38972787 38972906 -62900263 - HERVI LTR ERV1 -1796 4853 4735 650 336 8 4 chr13 38973137 38973399 -62899770 - HERVI LTR ERV1 -2029 5756 5494 3484 123 48 26 chr13 38973399 38973978 -62899191 + LTR14B LTR ERVK 17 608 0 1770 327 37 41 chr13 38974008 38975360 -62897809 - HERVI LTR ERV1 -2316 5469 4124 2803 318 47 39 chr13 38975445 38978081 -62895088 - HERVI LTR ERV1 -3673 4112 1037 562 327 5 10 chr13 38978239 38978444 -62894725 - HERVI LTR ERV1 -6782 1003 800 328 278 69 14 chr13 38978787 38978931 -62894238 - HERVI LTR ERV1 -6282 367 216 700 261 6 9 chr13 38979611 38979765 -62893404 - MER52A LTR ERV1 -534 800 603 10226 254 72 33 chr13 38979766 38985516 -62887653 - L1M2 LINE L1 -745 5465 9 1153 204 26 0 chr13 38985645 38985871 -62887298 + L1MC/D LINE L1 5463 5694 -2091 231 310 35 9 chr13 38985867 38985980 -62887189 + L1ME LINE L1 5580 5695 -426 * 25 0 0 0 chr13 38986114 38986139 -62887030 + AT_rich Low_complexity Low_complexity 1 25 0 34 42 0 0 chr13 38986314 38986362 -62886807 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr13 38987607 38987642 -62885527 + AT_rich Low_complexity Low_complexity 1 35 0 36 40 0 0 chr13 38988308 38988358 -62884811 + AT_rich Low_complexity Low_complexity 1 50 0 411 348 80 5 chr13 38988755 38988942 -62884227 - LTR33A LTR ERVL -264 259 59 2500 197 49 8 chr13 38989134 38989641 -62883528 - MER67C LTR ERV1 0 710 183 1882 165 44 15 chr13 38989644 38989983 -62883186 - THE1B LTR MaLR 0 364 16 10893 114 10 2 chr13 38989991 38991557 -62881612 - THE1B-int LTR MaLR -1 1579 2 1749 170 69 20 chr13 38991558 38991905 -62881264 - THE1B LTR MaLR 0 364 1 329 263 0 18 chr13 38991905 38992019 -62881150 - MER67C LTR ERV1 -526 184 73 182 276 179 58 chr13 38993069 38993225 -62879944 + L2 LINE L2 1875 2049 -1265 315 286 143 25 chr13 38993367 38993486 -62879683 + MIR SINE MIR 11 143 -119 330 98 0 0 chr13 38994195 38994246 -62878923 + (CA)n Simple_repeat Simple_repeat 1 51 0 14798 115 19 4 chr13 38996550 38999617 -62873552 + L1PA8 LINE L1 3085 6172 0 34 72 0 0 chr13 39000301 39000370 -62872799 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr13 39000671 39000692 -62872477 + AT_rich Low_complexity Low_complexity 1 21 0 383 306 139 6 chr13 39001238 39001418 -62871751 + L1MC5 LINE L1 6639 6842 -1119 2978 269 23 20 chr13 39001427 39002460 -62870709 + L1M4 LINE L1 4103 5138 -1008 261 119 0 0 chr13 39002505 39002547 -62870622 + (CA)n Simple_repeat Simple_repeat 1 42 0 1503 139 16 0 chr13 39002575 39002826 -62870343 - HSMAR2 DNA Mariner -1 1301 1047 488 206 0 9 chr13 39002825 39002932 -62870237 + MSTB LTR MaLR 317 422 -4 * 1709 166 9 12 chr13 39002932 39003257 -62869912 - HSMAR2 DNA Mariner -878 424 101 573 274 0 14 chr13 39003252 39003398 -62869771 - MLT2B1 LTR ERVL -66 454 311 * 22 80 0 0 chr13 39003440 39003490 -62869679 + AT_rich Low_complexity Low_complexity 1 50 0 2519 266 105 25 chr13 39004090 39006513 -62866656 + L1MB2 LINE L1 803 3273 -3109 * 3025 209 52 12 chr13 39006512 39007304 -62865865 - L1PA16 LINE L1 -705 5460 4635 4279 153 10 3 chr13 39007304 39008028 -62865141 + L1PA16 LINE L1 5438 6166 0 1383 235 58 23 chr13 39008032 39008563 -62864606 + L1MB2 LINE L1 3268 3817 -2565 1613 237 67 78 chr13 39008579 39009131 -62864038 - MLT2B3 LTR ERVL -7 547 2 300 53 0 0 chr13 39009139 39009177 -62863992 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 247 239 0 0 chr13 39009188 39009234 -62863935 + L1MB2 LINE L1 3865 3910 -2472 265 351 179 3 chr13 39009236 39009589 -62863580 + L1PA12 LINE L1 1 415 -7166 632 193 35 14 chr13 39010314 39010424 -62862745 + L1PA12 LINE L1 2714 2829 -4745 1750 160 15 15 chr13 39010424 39010749 -62862420 + L1PA13 LINE L1 5832 6156 -7 632 193 35 14 chr13 39010749 39010783 -62862386 + L1PA12 LINE L1 2829 2861 -4713 * 4487 225 52 64 chr13 39010772 39012515 -62860654 + L1MB2 LINE L1 3918 5619 -788 2346 94 0 0 chr13 39012515 39012813 -62860356 + AluSq SINE Alu 1 298 -15 4487 225 52 64 chr13 39012813 39013478 -62859691 + L1MB2 LINE L1 5619 6291 -116 23 0 0 0 chr13 39013901 39013924 -62859245 + AT_rich Low_complexity Low_complexity 1 23 0 1629 65 0 0 chr13 39014078 39014278 -62858891 - AluY SINE Alu -13 298 99 338 228 50 50 chr13 39014612 39014713 -62858456 - MER94 DNA DNA -33 101 1 219 224 0 0 chr13 39014763 39014821 -62858348 + (TG)n Simple_repeat Simple_repeat 2 59 0 854 191 64 0 chr13 39014903 39015091 -62858078 + L1MA8 LINE L1 6075 6274 -17 3567 153 37 98 chr13 39015094 39015344 -62857825 + L1PB4 LINE L1 5347 5611 -545 532 95 0 0 chr13 39015344 39015418 -62857751 - MADE1 DNA Mariner 0 80 7 3567 153 37 98 chr13 39015418 39015949 -62857220 + L1PB4 LINE L1 5611 6149 -7 397 311 121 32 chr13 39017195 39017443 -62855726 + MLT1I LTR MaLR 2 271 -138 753 159 6 104 chr13 39017744 39017873 -62855296 + L1PA16 LINE L1 5994 6101 -65 1828 183 89 2 chr13 39017873 39018267 -62854902 + MSTA LTR MaLR 1 428 0 753 159 6 104 chr13 39018267 39018319 -62854850 + L1PA16 LINE L1 6101 6157 -9 281 335 37 43 chr13 39018362 39018523 -62854646 + L2 LINE L2 3152 3311 -2 2498 64 0 6 chr13 39019719 39020031 -62853138 + AluY SINE Alu 1 310 -1 445 314 101 49 chr13 39020169 39020456 -62852713 + L3 LINE CR1 562 863 -714 22 0 0 0 chr13 39020880 39020902 -62852267 + AT_rich Low_complexity Low_complexity 1 22 0 218 308 103 56 chr13 39020939 39021046 -62852123 - L2 LINE L2 -18 3295 3184 24 77 0 0 chr13 39021344 39021396 -62851773 + AT_rich Low_complexity Low_complexity 1 52 0 2020 224 121 40 chr13 39022019 39022645 -62850524 + L1MC3 LINE L1 6705 7381 -404 750 261 70 83 chr13 39022645 39023613 -62849556 + MER52A LTR ERV1 659 1755 0 1151 188 93 73 chr13 39023614 39023767 -62849402 + L1MC3 LINE L1 7380 7528 -257 2516 58 0 0 chr13 39023767 39024077 -62849092 + AluY SINE Alu 1 310 -1 1151 188 93 73 chr13 39024077 39024321 -62848848 + L1MC3 LINE L1 7528 7785 0 26 30 0 0 chr13 39024983 39025016 -62848153 + AT_rich Low_complexity Low_complexity 1 33 0 218 279 0 0 chr13 39025125 39025168 -62848001 - MIR SINE MIR -141 121 79 22 35 0 0 chr13 39025731 39025760 -62847409 + AT_rich Low_complexity Low_complexity 1 29 0 2341 138 55 26 chr13 39025760 39025914 -62847255 - L1MA3 LINE L1 0 6305 6157 299 25 25 0 chr13 39025914 39025954 -62847215 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1839 145 3 11 chr13 39025954 39026237 -62846932 - AluSx SINE Alu -28 284 4 2341 138 55 26 chr13 39026237 39026536 -62846633 - L1MA3 LINE L1 -147 6158 5838 23 0 0 0 chr13 39027947 39027970 -62845199 + AT_rich Low_complexity Low_complexity 1 23 0 213 94 0 0 chr13 39028236 39028268 -62844901 + (TA)n Simple_repeat Simple_repeat 1 32 0 2328 64 3 64 chr13 39028696 39029026 -62844143 - AluY SINE Alu 0 311 2 936 200 0 0 chr13 39029414 39029584 -62843585 - AluSg/x SINE Alu -6 306 137 2113 109 0 0 chr13 39029713 39030043 -62843126 + AluSx SINE Alu 1 330 0 23 33 0 0 chr13 39030043 39030073 -62843096 + AT_rich Low_complexity Low_complexity 1 30 0 223 269 11 11 chr13 39031614 39031707 -62841462 + (TA)n Simple_repeat Simple_repeat 1 93 0 309 284 154 35 chr13 39031786 39032124 -62841045 - L1M4 LINE L1 -2919 3227 2850 3803 214 66 15 chr13 39032257 39032690 -62840479 - L1 LINE L1 -1197 4949 4539 2324 87 0 3 chr13 39032690 39033000 -62840169 - AluY SINE Alu -2 309 1 3803 214 66 15 chr13 39033000 39033550 -62839619 - L1 LINE L1 -1607 4539 3916 4179 194 55 37 chr13 39033558 39033616 -62839553 + L1MA9 LINE L1 5256 5311 -1001 2091 92 4 7 chr13 39033616 39033925 -62839244 - AluY SINE Alu 0 308 1 4179 194 55 37 chr13 39033925 39034902 -62838267 + L1MA9 LINE L1 5311 6312 0 413 290 66 39 chr13 39035177 39035436 -62837733 - L1 LINE L1 -3734 2412 2147 655 225 0 0 chr13 39035849 39035991 -62837178 - L1MA3 LINE L1 0 6305 6164 4437 61 5 0 chr13 39036606 39037179 -62835990 - L1PA8 LINE L1 0 6172 5597 230 0 0 0 chr13 39037412 39037440 -62835729 + L1PA6 LINE L1 6118 6145 -9 23 0 0 0 chr13 39037754 39037777 -62835392 + AT_rich Low_complexity Low_complexity 1 23 0 427 134 61 0 chr13 39038431 39038513 -62834656 + L1PA13 LINE L1 6073 6159 -4 543 261 30 60 chr13 39038799 39039067 -62834102 + L1MA9 LINE L1 6015 6274 -38 21 57 0 0 chr13 39039329 39039364 -62833805 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 39039443 39039478 -62833691 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 39040098 39040126 -62833043 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 39041451 39041475 -62831694 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr13 39041801 39041852 -62831317 + AT_rich Low_complexity Low_complexity 1 51 0 308 278 0 10 chr13 39042004 39042101 -62831068 - L1M4 LINE L1 -3727 2419 2324 30 45 0 0 chr13 39042266 39042310 -62830859 + AT_rich Low_complexity Low_complexity 1 44 0 27 92 0 0 chr13 39042376 39042452 -62830717 + AT_rich Low_complexity Low_complexity 1 76 0 1050 212 106 66 chr13 39042750 39043099 -62830070 + MLT1A1 LTR MaLR 1 363 -2 25 0 0 0 chr13 39043170 39043195 -62829974 + AT_rich Low_complexity Low_complexity 1 25 0 197 319 50 69 chr13 39043433 39043593 -62829576 - L3 LINE CR1 -10 1567 1411 26 0 0 0 chr13 39043775 39043801 -62829368 + AT_rich Low_complexity Low_complexity 1 26 0 5726 232 31 48 chr13 39046403 39047728 -62825441 + L1MC3 LINE L1 4568 5915 -231 1882 135 47 47 chr13 39047728 39048092 -62825077 - THE1B LTR MaLR 0 364 1 10010 128 29 4 chr13 39048092 39049633 -62823536 - THE1B-int LTR MaLR 0 1580 1 2149 123 47 33 chr13 39049633 39049992 -62823177 - THE1B LTR MaLR 0 364 1 5726 232 31 48 chr13 39049992 39050964 -62822205 + L1MC3 LINE L1 4415 5403 -743 3693 190 46 9 chr13 39051654 39052343 -62820826 + MER44D DNA MER2_type 9 595 -10 23 0 0 0 chr13 39052612 39052635 -62820534 + AT_rich Low_complexity Low_complexity 1 23 0 225 239 0 30 chr13 39052823 39052890 -62820279 + GA-rich Low_complexity Low_complexity 4 68 0 25 0 0 0 chr13 39053530 39053555 -62819614 + AT_rich Low_complexity Low_complexity 1 25 0 24 77 0 0 chr13 39054236 39054288 -62818881 + AT_rich Low_complexity Low_complexity 1 52 0 256 246 86 80 chr13 39054640 39054815 -62818354 - ORSL DNA AcHobo -1 274 99 549 44 0 0 chr13 39054826 39054894 -62818275 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 1029 208 0 41 chr13 39054953 39055174 -62817995 - AluJo SINE Alu -100 212 1 313 171 0 73 chr13 39055176 39055258 -62817911 - ORSL DNA AcHobo -186 89 14 25 31 0 0 chr13 39055817 39055849 -62817320 + AT_rich Low_complexity Low_complexity 1 32 0 613 330 50 4 chr13 39055874 39056132 -62817037 - HERVL LTR ERVL -1514 4140 3871 615 133 0 0 chr13 39056338 39056436 -62816733 - L1PB4 LINE L1 -6 6150 6053 474 204 29 0 chr13 39056629 39056732 -62816437 - MER5A DNA MER1_type -77 112 7 257 279 148 25 chr13 39056767 39056889 -62816280 - HERVL LTR ERVL -2984 2780 2644 523 269 44 47 chr13 39057539 39057836 -62815333 + L1MDa LINE L1 1295 1590 -4950 22 35 0 0 chr13 39059810 39059839 -62813330 + AT_rich Low_complexity Low_complexity 1 29 0 776 223 100 120 chr13 39060384 39060873 -62812296 + LTR28 LTR ERV1 1 602 -418 1113 243 104 25 chr13 39060880 39061411 -62811758 + L1M4 LINE L1 3528 4100 -2046 343 277 47 43 chr13 39061445 39061680 -62811489 + L1M4 LINE L1 4178 4413 -1733 4132 187 39 23 chr13 39061719 39062602 -62810567 + L1ME1 LINE L1 20 916 -5468 508 162 20 0 chr13 39062604 39062703 -62810466 + L1ME1 LINE L1 1274 1374 -5010 1725 180 17 11 chr13 39062717 39063067 -62810102 - L1MC1 LINE L1 -255 6078 5727 3660 236 216 39 chr13 39063105 39063365 -62809804 - L1M1 LINE L1 -4485 2621 2408 1215 104 11 127 chr13 39063365 39063625 -62809544 + MER30 DNA MER1_type 1 230 0 3660 236 216 39 chr13 39063625 39064714 -62808455 - L1M1 LINE L1 -4698 2408 1513 2339 181 19 2 chr13 39064714 39065135 -62808034 - MSTA LTR MaLR 0 428 1 3660 236 216 39 chr13 39065135 39066284 -62806885 - L1M1 LINE L1 -5593 1513 1 26 74 0 0 chr13 39067369 39067423 -62805746 + AT_rich Low_complexity Low_complexity 1 54 0 598 235 0 37 chr13 39068814 39068950 -62804219 - FLAM_C SINE Alu -2 131 1 206 182 124 16 chr13 39069027 39069148 -62804021 + (CTAAT)n Simple_repeat Simple_repeat 4 137 0 576 306 17 0 chr13 39069560 39069740 -62803429 - L2 LINE L2 -526 2788 2606 2302 56 0 56 chr13 39069854 39070176 -62802993 + AluY SINE Alu 1 304 -7 1078 271 62 39 chr13 39070525 39071277 -62801892 + L1ME1 LINE L1 2961 3730 -2652 823 258 51 60 chr13 39071283 39071636 -62801533 + MLT1A1 LTR MaLR 16 365 0 763 254 70 0 chr13 39071644 39071888 -62801281 + L1ME1 LINE L1 3733 3993 -2389 346 93 74 0 chr13 39071916 39072024 -62801145 + (TA)n Simple_repeat Simple_repeat 1 116 0 38 0 0 0 chr13 39072070 39072108 -62801061 + AT_rich Low_complexity Low_complexity 1 38 0 819 266 142 40 chr13 39072116 39072631 -62800538 + L1ME1 LINE L1 4034 4637 -1745 2090 135 0 0 chr13 39072631 39072928 -62800241 - AluSx SINE Alu -15 297 1 819 266 142 40 chr13 39072928 39073093 -62800076 + L1ME1 LINE L1 4637 4784 -1598 279 0 0 0 chr13 39073093 39073124 -62800045 + (TG)n Simple_repeat Simple_repeat 2 32 0 906 265 78 30 chr13 39073156 39073692 -62799477 + L1ME1 LINE L1 4962 5523 -859 2443 304 44 25 chr13 39073719 39074413 -62798756 + L1MB7 LINE L1 -283 429 -6117 1832 160 4 0 chr13 39074413 39074715 -62798454 - AluSq SINE Alu 0 303 1 2443 304 44 25 chr13 39074715 39074776 -62798393 + L1MB7 LINE L1 429 487 -6059 1588 251 60 27 chr13 39074785 39075800 -62797369 + L1MB7 LINE L1 877 2084 -4741 232 246 0 0 chr13 39075861 39075918 -62797251 + L1MB7 LINE L1 4187 4243 -2401 2222 211 51 16 chr13 39075940 39076252 -62796917 + L1MB7 LINE L1 5428 5728 -954 910 250 104 24 chr13 39076252 39076588 -62796581 - MLT1A1 LTR MaLR 0 365 3 2222 211 51 16 chr13 39076588 39077156 -62796013 + L1MB7 LINE L1 5728 6336 -346 626 239 0 0 chr13 39077181 39077298 -62795871 + FRAM SINE Alu 35 151 -25 888 184 6 6 chr13 39077330 39077509 -62795660 + L1MB7 LINE L1 6503 6681 -1 2043 246 44 80 chr13 39077511 39078430 -62794739 + L1ME1 LINE L1 5521 6383 -19 2457 64 0 3 chr13 39078605 39078917 -62794252 + AluY SINE Alu 1 311 0 430 332 34 42 chr13 39081474 39081712 -62791457 + MLT1H LTR MaLR 43 278 -271 6003 112 10 1 chr13 39082205 39083330 -62789839 + L1PA13 LINE L1 5030 6163 0 26 30 0 0 chr13 39085544 39085577 -62787592 + AT_rich Low_complexity Low_complexity 1 33 0 674 238 21 0 chr13 39085580 39085764 -62787405 + AluJb SINE Alu 138 324 0 1827 152 76 0 chr13 39085765 39086068 -62787101 - LTR17 LTR ERV1 0 780 455 3337 64 0 7 chr13 39086069 39086520 -62786649 + LTR7 LTR ERV1 1 448 -2 19349 91 25 34 chr13 39086522 39089543 -62783626 + HERVH LTR ERV1 1 2995 -4718 6118 89 3 0 chr13 39089522 39090373 -62782796 + HERVH LTR ERV1 3140 3993 -3720 * 4281 148 1 1 chr13 39090375 39091037 -62782132 + HERVH LTR ERV1 4488 5149 -2564 1327 121 17 52 chr13 39091034 39091265 -62781904 + HERVH LTR ERV1 5597 5819 -1894 * 2390 97 45 13 chr13 39091263 39091643 -62781526 + HERVH LTR ERV1 7322 7713 0 3252 69 2 9 chr13 39091643 39092094 -62781075 + LTR7 LTR ERV1 1 448 -2 3084 117 2 11 chr13 39092096 39092558 -62780611 - LTR17 LTR ERV1 -322 458 1 900 138 6 11 chr13 39092822 39092996 -62780173 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 25 90 0 0 chr13 39093048 39093115 -62780054 + AT_rich Low_complexity Low_complexity 1 67 0 344 332 46 38 chr13 39093483 39093721 -62779448 + Charlie8 DNA MER1_type 7 246 -2171 21 36 0 0 chr13 39093849 39093877 -62779292 + AT_rich Low_complexity Low_complexity 1 28 0 523 189 18 0 chr13 39094004 39094115 -62779054 - L1MA8 LINE L1 -10 6281 6169 29 0 0 0 chr13 39094807 39094836 -62778333 + AT_rich Low_complexity Low_complexity 1 29 0 313 242 98 39 chr13 39094899 39095052 -62778117 + L1ME4a LINE L1 5707 5868 -253 376 343 183 27 chr13 39095091 39095735 -62777434 - L2 LINE L2 -5 3308 1528 24 67 0 0 chr13 39098649 39098694 -62774475 + AT_rich Low_complexity Low_complexity 1 45 0 217 217 14 14 chr13 39100778 39100847 -62772322 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1569 205 3 3 chr13 39101035 39101332 -62771837 + AluJo SINE Alu 15 311 -1 2487 69 110 90 chr13 39104725 39104766 -62768403 - MLT2A1 LTR ERVL 0 444 405 1078 99 0 11 chr13 39104766 39104948 -62768221 + (TA)n Simple_repeat Simple_repeat 1 180 0 2487 69 110 90 chr13 39104948 39105341 -62767828 - MLT2A1 LTR ERVL -39 405 1 839 265 34 0 chr13 39105591 39105825 -62767344 - MER58 DNA MER1_type -2169 251 10 1630 253 82 21 chr13 39105922 39106408 -62766761 - MLT1E2 LTR MaLR 0 626 111 947 264 158 64 chr13 39106752 39107271 -62765898 - MLT1G1 LTR MaLR -27 568 1 598 248 4 91 chr13 39108806 39109048 -62764121 + L2 LINE L2 3088 3308 -5 649 76 19 9 chr13 39109051 39109156 -62764013 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 356 164 31 23 chr13 39109259 39109387 -62763782 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1820 158 14 0 chr13 39109474 39109766 -62763403 + AluSx SINE Alu 5 300 -12 22 35 0 0 chr13 39110819 39110848 -62762321 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 39111344 39111373 -62761796 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 39111793 39111825 -62761344 + AT_rich Low_complexity Low_complexity 1 32 0 36 62 0 0 chr13 39112077 39112141 -62761028 + AT_rich Low_complexity Low_complexity 1 64 0 835 146 0 15 chr13 39113370 39113507 -62759662 + AluSg/x SINE Alu 176 310 -2 24 0 0 0 chr13 39113883 39113907 -62759262 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 39116769 39116790 -62756379 + AT_rich Low_complexity Low_complexity 1 21 0 342 309 83 24 chr13 39116913 39117081 -62756088 - MIR SINE MIR -70 192 15 202 373 82 0 chr13 39117088 39117198 -62755971 + L2 LINE L2 3148 3266 -6 21 0 0 0 chr13 39118009 39118030 -62755139 + AT_rich Low_complexity Low_complexity 1 21 0 354 23 0 0 chr13 39119041 39119084 -62754085 + (CA)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr13 39119559 39119591 -62753578 + AT_rich Low_complexity Low_complexity 1 32 0 327 25 0 0 chr13 39119713 39119753 -62753416 + (TG)n Simple_repeat Simple_repeat 2 41 0 1388 236 73 47 chr13 39120851 39121343 -62751826 - MLT1D LTR MaLR 0 505 1 1756 153 177 11 chr13 39121862 39122229 -62750940 - MSTA LTR MaLR 0 428 1 26 74 0 0 chr13 39122364 39122418 -62750751 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr13 39124855 39124885 -62748284 + AT_rich Low_complexity Low_complexity 1 30 0 216 236 0 18 chr13 39125350 39125405 -62747764 + (TA)n Simple_repeat Simple_repeat 2 55 0 328 319 30 71 chr13 39125640 39125809 -62747360 + MIR SINE MIR 35 196 -66 234 0 0 0 chr13 39126504 39126530 -62746639 + (GA)n Simple_repeat Simple_repeat 2 27 0 248 294 102 59 chr13 39126546 39126920 -62746249 - Tigger8 DNA MER2_type -165 501 112 1016 269 101 27 chr13 39127781 39128146 -62745023 + MSTD LTR MaLR 1 392 -4 1211 120 0 0 chr13 39128470 39128637 -62744532 + AluSg/x SINE Alu 137 303 -9 239 330 27 36 chr13 39128689 39128801 -62744368 - L2 LINE L2 -334 2938 2828 940 137 68 0 chr13 39128937 39129098 -62744071 - Tigger5 DNA MER2_type 0 2323 2152 589 216 0 0 chr13 39129090 39129201 -62743968 - Tigger5 DNA MER2_type -2206 117 7 * 280 206 10 10 chr13 39129311 39129408 -62743761 + GA-rich Low_complexity Low_complexity 4 100 0 1099 203 90 69 chr13 39129589 39129978 -62743191 + MER39 LTR ERV1 311 707 0 343 172 11 11 chr13 39129991 39130078 -62743091 + GA-rich Low_complexity Low_complexity 3 89 0 26 50 0 0 chr13 39130981 39131021 -62742148 + AT_rich Low_complexity Low_complexity 1 40 0 26 64 0 0 chr13 39131046 39131093 -62742076 + AT_rich Low_complexity Low_complexity 1 47 0 1252 273 47 93 chr13 39131711 39132282 -62740887 + MER77 LTR ERV1 55 599 -6 1748 161 174 8 chr13 39132465 39132832 -62740337 + MSTA LTR MaLR 1 428 0 8367 184 26 12 chr13 39132832 39134459 -62738710 + MSTA-int LTR MaLR 1 1651 0 1701 161 151 6 chr13 39134459 39134783 -62738386 + MSTA LTR MaLR 1 371 -57 2215 103 0 3 chr13 39134973 39135275 -62737894 + AluSq SINE Alu 1 301 -12 2193 157 32 71 chr13 39135657 39136149 -62737020 - L1MA4A LINE L1 -3 6300 5828 315 132 176 22 chr13 39136156 39136247 -62736922 + L1MC4 LINE L1 6617 6721 -1321 246 265 102 31 chr13 39136172 39136270 -62736899 - L1MC4 LINE L1 -1323 6719 6615 * 1598 179 7 3 chr13 39136280 39136571 -62736598 - L1MA4A LINE L1 -523 5777 5486 195 373 0 0 chr13 39136877 39136952 -62736217 - MIR SINE MIR -82 126 52 24 0 0 0 chr13 39137965 39137989 -62735180 + AT_rich Low_complexity Low_complexity 1 24 0 478 159 20 17 chr13 39138309 39138330 -62734839 - L1M1 LINE L1 -811 5492 5473 890 164 0 11 chr13 39138330 39138507 -62734662 - L1MA5 LINE L1 -2 6298 6124 478 159 20 17 chr13 39138507 39138612 -62734557 - L1M1 LINE L1 -830 5473 5369 1186 117 0 0 chr13 39138612 39138774 -62734395 - AluSp SINE Alu -18 295 134 641 233 43 95 chr13 39139114 39139346 -62733823 + AluJo SINE Alu 93 312 0 33 25 0 0 chr13 39139425 39139465 -62733704 + AT_rich Low_complexity Low_complexity 1 40 0 281 264 47 23 chr13 39139518 39139647 -62733522 - HAL1 LINE L1 -56 2451 2320 22 0 0 0 chr13 39139755 39139777 -62733392 + AT_rich Low_complexity Low_complexity 1 22 0 252 208 23 27 chr13 39139882 39139973 -62733196 + HsTC2 DNA Tc2 1803 1896 -2 313 355 29 41 chr13 39140323 39140565 -62732604 - HAL1 LINE L1 -782 1725 1487 264 288 56 69 chr13 39140629 39140862 -62732307 - HAL1 LINE L1 -1047 1460 1231 21 0 0 0 chr13 39141313 39141334 -62731835 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr13 39142626 39142666 -62730503 + AT_rich Low_complexity Low_complexity 1 40 0 428 35 17 0 chr13 39143715 39143773 -62729396 + (TC)n Simple_repeat Simple_repeat 2 60 0 * 433 168 26 26 chr13 39143772 39143927 -62729242 + (TA)n Simple_repeat Simple_repeat 1 155 0 2050 200 54 7 chr13 39144029 39144434 -62728735 - MSTB LTR MaLR 0 426 3 7001 195 65 33 chr13 39144440 39146036 -62727133 - MSTB-int LTR MaLR -4 1647 1 1602 246 57 2 chr13 39146036 39146442 -62726727 - MSTA LTR MaLR 0 428 1 2575 52 0 0 chr13 39146610 39146920 -62726249 - AluY SINE Alu -1 310 1 357 316 75 32 chr13 39146981 39147168 -62726001 + MIR SINE MIR 50 244 -18 1020 263 49 42 chr13 39147346 39147772 -62725397 - MER110A LTR ERV1 0 468 40 3901 280 70 44 chr13 39148064 39149835 -62723334 - MER110-int LTR ERV1 -458 4189 2373 1102 193 89 55 chr13 39149949 39150275 -62722894 + MER2 DNA MER2_type 9 345 0 1146 311 68 54 chr13 39150294 39150706 -62722463 - MER110-int LTR ERV1 -2441 2206 1801 1728 155 58 22 chr13 39150706 39151068 -62722101 - THE1C LTR MaLR 0 375 1 1146 311 68 54 chr13 39151068 39151206 -62721963 - MER110-int LTR ERV1 -2846 1801 1666 2380 90 0 3 chr13 39151206 39151516 -62721653 - AluSx SINE Alu 0 312 4 1146 311 68 54 chr13 39151516 39151777 -62721392 - MER110-int LTR ERV1 -2981 1666 1383 481 370 46 27 chr13 39151869 39152307 -62720862 - MER110-int LTR ERV1 -3244 3557 3112 572 296 90 85 chr13 39152516 39153127 -62720042 - MER110-int LTR ERV1 -3868 779 166 2881 253 43 23 chr13 39153160 39154400 -62718769 - L1M4 LINE L1 -2029 4615 3351 491 308 0 0 chr13 39154400 39154530 -62718639 + Tigger3(Golem) DNA MER2_type 1 130 -2899 1304 183 33 0 chr13 39154590 39154830 -62718339 + Tigger3(Golem) DNA MER2_type 2791 3038 0 1562 257 131 30 chr13 39154860 39155827 -62717342 - L1M4 LINE L1 -3324 3320 2177 3472 56 2 2 chr13 39155827 39156275 -62716894 + LTR7 LTR ERV1 1 448 -2 1562 257 131 30 chr13 39156275 39156619 -62716550 - L1M4 LINE L1 -4467 2177 1869 561 231 75 8 chr13 39156733 39156867 -62716302 - FLAM_C SINE Alu 0 143 1 409 299 13 0 chr13 39156869 39157026 -62716143 - L1M4 LINE L1 -4877 1665 1507 4964 179 26 19 chr13 39157072 39158255 -62714914 - L1MA3 LINE L1 0 6305 5114 3143 57 27 11 chr13 39158256 39158697 -62714472 - LTR7 LTR ERV1 -2 448 1 2356 93 50 13 chr13 39158697 39159075 -62714094 - HERVH LTR ERV1 0 7713 7322 1380 109 20 0 chr13 39159073 39159274 -62713895 - HERVH LTR ERV1 -1894 5819 5615 * 4151 147 8 1 chr13 39159299 39159957 -62713212 - HERVH LTR ERV1 -2564 5149 4488 3359 105 4 4 chr13 39159959 39160453 -62712716 - HERVH LTR ERV1 -3720 3993 3500 * 20572 86 58 31 chr13 39160452 39163653 -62709516 - HERVH LTR ERV1 -4423 3290 1 3291 75 0 7 chr13 39163655 39164106 -62709063 - LTR7 LTR ERV1 -2 448 1 1573 196 14 14 chr13 39164106 39164464 -62708705 - L1MA3 LINE L1 -1027 5119 4762 665 279 54 17 chr13 39164433 39164784 -62708385 - L1M4 LINE L1 -5056 1486 1123 * 1066 211 68 51 chr13 39164792 39165172 -62707997 - MER67C LTR ERV1 -13 501 152 725 300 113 70 chr13 39165221 39165445 -62707724 - L1M4 LINE L1 -5671 871 658 2309 86 0 3 chr13 39165445 39165746 -62707423 + AluY SINE Alu 1 300 -11 725 300 113 70 chr13 39165746 39166344 -62706825 - L1M4 LINE L1 -5884 658 14 194 62 31 0 chr13 39167401 39167433 -62705736 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1276 200 85 11 chr13 39168060 39168330 -62704839 - AluJo SINE Alu -22 290 1 3346 206 15 11 chr13 39169959 39170702 -62702467 - L1MB4 LINE L1 -8 6172 5427 204 381 7 43 chr13 39171672 39171811 -62701358 + L2 LINE L2 3137 3270 -2 2150 163 8 5 chr13 39172791 39173165 -62700004 - THE1C LTR MaLR 0 375 1 351 150 0 0 chr13 39173553 39173613 -62699556 + (TA)n Simple_repeat Simple_repeat 1 60 0 292 192 40 61 chr13 39173712 39173811 -62699358 - L1MC4 LINE L1 -1339 6703 6607 527 349 65 9 chr13 39175479 39175711 -62697458 + MIR SINE MIR 17 261 -1 312 207 24 0 chr13 39176486 39176568 -62696601 - L1MA8 LINE L1 -15 6276 6193 23 0 0 0 chr13 39176758 39176781 -62696388 + AT_rich Low_complexity Low_complexity 1 23 0 259 114 0 0 chr13 39177799 39177843 -62695326 - L1PA16 LINE L1 -9 6157 6114 2602 160 38 62 chr13 39178083 39178682 -62694487 + L1MA7 LINE L1 5707 6291 0 311 64 0 21 chr13 39178745 39178792 -62694377 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 579 385 20 6 chr13 39179067 39179412 -62693757 - ERVL LTR ERVL -659 5105 4756 306 182 0 0 chr13 39180041 39180107 -62693062 + GA-rich Low_complexity Low_complexity 1 66 0 546 338 115 24 chr13 39180288 39180741 -62692428 - ERVL LTR ERVL -1287 4367 3874 27 73 0 0 chr13 39181075 39181130 -62692039 + AT_rich Low_complexity Low_complexity 1 55 0 388 342 113 30 chr13 39181380 39181716 -62691453 - ERVL LTR ERVL -2397 3257 2894 514 360 55 25 chr13 39182040 39182476 -62690693 - ERVL LTR ERVL -3112 2542 2094 308 315 37 0 chr13 39183810 39183918 -62689251 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 39183918 39184211 -62688958 + THE1B LTR MaLR 1 299 -65 3627 113 0 4 chr13 39184211 39184717 -62688452 + THE1-int LTR MaLR 1056 1559 -21 306 289 0 0 chr13 39184818 39185018 -62688151 + G-rich Low_complexity Low_complexity 1 200 0 4068 117 134 28 chr13 39185434 39186181 -62686988 + LTR12 LTR ERV1 1 826 0 883 72 84 4 chr13 39186181 39186303 -62686866 + LTR12 LTR ERV1 452 563 -151 2114 79 0 67 chr13 39186303 39186633 -62686536 + L1PA8 LINE L1 5863 6170 -2 883 72 84 4 chr13 39186633 39186649 -62686520 + LTR12 LTR ERV1 563 712 -2 337 429 16 4 chr13 39186739 39186993 -62686176 - MIR SINE MIR -2 260 4 914 226 74 109 chr13 39187137 39187822 -62685347 + LTR1B LTR ERV1 1 751 -75 23873 129 9 3 chr13 39188150 39192508 -62680661 - L1PA8A LINE L1 -299 5832 1453 763 313 72 51 chr13 39192760 39193725 -62679444 - ERVL LTR ERVL -2918 2567 1742 327 350 70 46 chr13 39197510 39197898 -62675271 + L2 LINE L2 1964 2360 -954 25 20 0 59 chr13 39198938 39198989 -62674180 + AT_rich Low_complexity Low_complexity 1 48 0 382 331 63 63 chr13 39199081 39199443 -62673726 + L1ME LINE L1 1265 1626 -4758 277 233 48 0 chr13 39199704 39199807 -62673362 + L1ME LINE L1 2515 2622 -3760 183 153 0 51 chr13 39199814 39199873 -62673296 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 867 320 58 14 chr13 39199875 39200647 -62672522 + L1ME LINE L1 2753 3558 -2824 259 307 11 0 chr13 39200761 39200849 -62672320 + L1ME LINE L1 3713 3801 -2581 848 267 20 24 chr13 39200944 39201195 -62671974 + MLT2D LTR ERVL 1 250 -164 279 203 0 0 chr13 39201379 39201443 -62671726 + (CA)n Simple_repeat Simple_repeat 2 65 0 304 128 0 0 chr13 39201443 39201490 -62671679 + MLT2D LTR ERVL 367 413 -1 307 318 67 28 chr13 39201576 39201831 -62671338 + L1ME LINE L1 4107 4371 -2011 1507 279 77 2 chr13 39202388 39202790 -62670379 + MER70B LTR ERVL 4 435 -143 1503 155 18 7 chr13 39203091 39203375 -62669794 + L1MB1 LINE L1 5882 6168 0 320 302 54 20 chr13 39203494 39203643 -62669526 + L1MC4 LINE L1 7749 7902 -140 339 25 0 0 chr13 39203644 39203684 -62669485 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr13 39203729 39203752 -62669417 + AT_rich Low_complexity Low_complexity 1 23 0 183 357 14 0 chr13 39203768 39203838 -62669331 - L2 LINE L2 -560 2754 2684 1055 314 121 15 chr13 39203838 39204300 -62668869 + MER69 DNA AcHobo 2 512 -2014 528 219 215 5 chr13 39204303 39204522 -62668647 + MER69 DNA AcHobo 2166 2430 -96 294 279 121 19 chr13 39207007 39207272 -62665897 + L1ME LINE L1 4554 4845 -1537 487 276 60 15 chr13 39207293 39207492 -62665677 + L1ME LINE L1 5636 5843 -563 4475 70 12 6 chr13 39209593 39210615 -62662554 - MER11A LTR ERVK 0 1266 1 21 36 0 0 chr13 39210880 39210908 -62662261 + AT_rich Low_complexity Low_complexity 1 28 0 423 340 92 49 chr13 39212051 39212419 -62660750 + L1MEd LINE L1 4 387 -5732 28 0 0 0 chr13 39212736 39212764 -62660405 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 78 6 chr13 39212859 39213025 -62660144 - MIR SINE MIR -72 190 13 362 231 41 0 chr13 39213372 39213519 -62659650 + (TA)n Simple_repeat Simple_repeat 2 154 0 28 61 0 0 chr13 39213638 39213687 -62659482 + AT_rich Low_complexity Low_complexity 1 49 0 261 57 0 0 chr13 39216047 39216082 -62657087 + (TA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr13 39216685 39216726 -62656443 + AT_rich Low_complexity Low_complexity 1 41 0 180 304 13 38 chr13 39217811 39217890 -62655279 - MIR SINE MIR 0 262 186 2385 158 42 8 chr13 39217912 39218392 -62654777 - L1MA4 LINE L1 -5 6295 5800 2049 125 28 3 chr13 39218393 39218714 -62654455 - Tigger4(Zombi) DNA MER2_type -877 1854 1526 23 0 0 0 chr13 39218895 39218918 -62654251 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 39219117 39219140 -62654029 + AT_rich Low_complexity Low_complexity 1 23 0 401 315 117 0 chr13 39219658 39219820 -62653349 - MIR SINE MIR -30 232 52 998 130 33 15 chr13 39219822 39220154 -62653015 + MSTA LTR MaLR 1 428 0 301 211 14 14 chr13 39220298 39220369 -62652800 + MER94 DNA DNA 16 86 -48 201 279 148 41 chr13 39220928 39221050 -62652119 - L2 LINE L2 -1 3271 3137 248 308 0 0 chr13 39223711 39223789 -62649380 - MLT1H LTR MaLR -460 89 12 866 323 48 60 chr13 39224250 39224751 -62648418 - L2 LINE L2 -420 2894 2400 255 345 85 14 chr13 39224969 39225192 -62647977 - ERVL LTR ERVL -465 5299 5061 287 304 43 0 chr13 39225512 39225627 -62647542 - ERVL LTR ERVL -1006 4648 4529 393 329 67 36 chr13 39225766 39225991 -62647178 - ERVL LTR ERVL -1315 4339 4108 262 380 72 0 chr13 39226057 39226172 -62646997 - ERVL LTR ERVL -1657 3997 3892 23 0 0 0 chr13 39226172 39226195 -62646974 + AT_rich Low_complexity Low_complexity 1 23 0 262 380 72 0 chr13 39226195 39226307 -62646862 - ERVL LTR ERVL -1762 3892 3730 376 355 20 4 chr13 39227014 39227221 -62645948 - ERVL LTR ERVL -2544 3149 2903 1043 257 79 14 chr13 39228580 39228657 -62644512 + MLT1B LTR MaLR 1 72 -318 2089 125 3 3 chr13 39228657 39228960 -62644209 - AluSx SINE Alu -9 303 1 1043 257 79 14 chr13 39228960 39229248 -62643921 + MLT1B LTR MaLR 72 390 0 232 218 64 26 chr13 39229248 39229326 -62643843 - L1ME3A LINE L1 -13 6157 6077 2500 143 44 5 chr13 39229391 39229803 -62643366 - MSTA LTR MaLR 0 428 1 7802 190 30 23 chr13 39229803 39231442 -62641727 - MSTA-int LTR MaLR 0 1651 1 1148 128 18 82 chr13 39231442 39231510 -62641659 - MSTA LTR MaLR 0 428 357 2054 100 0 4 chr13 39231510 39231779 -62641390 + AluSc SINE Alu 37 304 -5 1148 128 18 82 chr13 39231779 39231929 -62641240 - MSTA LTR MaLR -71 357 224 701 111 0 0 chr13 39231938 39232037 -62641132 - MSTA LTR MaLR -329 99 1 1428 301 44 9 chr13 39232134 39232659 -62640510 - L1ME3A LINE L1 -258 5912 5370 23 33 0 0 chr13 39234657 39234687 -62638482 + AT_rich Low_complexity Low_complexity 1 30 0 401 196 127 82 chr13 39236511 39236669 -62636500 + MLT1J LTR MaLR 6 170 -341 560 319 62 36 chr13 39237228 39237564 -62635605 + MLT1J LTR MaLR 167 511 0 229 241 19 0 chr13 39238037 39238091 -62635078 + MLT1J1 LTR MaLR 84 138 -308 401 375 63 13 chr13 39238945 39239244 -62633925 + L1MEd LINE L1 350 663 -5456 928 253 52 57 chr13 39239254 39239622 -62633547 - MER74B LTR ERVL -68 554 189 2971 175 38 4 chr13 39240592 39241151 -62632018 + HSMAR2 DNA Mariner 718 1295 -7 1224 246 62 14 chr13 39241183 39241540 -62631629 - MLT1A2 LTR MaLR 0 374 1 623 209 0 0 chr13 39241675 39241809 -62631360 - L1PB3 LINE L1 -2285 3861 3728 * 6089 196 24 17 chr13 39241805 39243404 -62629765 + L1PB3 LINE L1 3891 5496 -658 1357 224 26 0 chr13 39243408 39243712 -62629457 + AluJb SINE Alu 7 317 0 3571 164 31 5 chr13 39243712 39244359 -62628810 + L1PB3 LINE L1 5487 6150 -4 313 348 32 32 chr13 39244627 39244782 -62628387 + MIR SINE MIR 5 159 -103 37 39 0 0 chr13 39244980 39245031 -62628138 + AT_rich Low_complexity Low_complexity 1 51 0 232 317 41 55 chr13 39245548 39245693 -62627476 - MIR SINE MIR -72 190 48 2726 193 58 11 chr13 39245839 39246408 -62626761 + L1P3 LINE L1 1 596 -5279 286 67 22 0 chr13 39246508 39246553 -62626616 + THE1B-int LTR MaLR 1535 1580 0 2086 160 36 14 chr13 39246553 39246909 -62626260 + THE1B LTR MaLR 1 364 0 460 258 67 11 chr13 39247904 39248082 -62625087 + L2 LINE L2 1773 1960 -1354 1971 183 35 29 chr13 39248082 39248627 -62624542 - MLT2A2 LTR ERVL -2 552 1 1515 347 114 16 chr13 39248634 39248930 -62624239 + L2 LINE L2 1961 2227 -1086 1881 204 23 21 chr13 39248930 39249362 -62623807 + Tigger2a DNA MER2_type 1 433 -1 1515 347 114 16 chr13 39249362 39250248 -62622921 + L2 LINE L2 2227 3269 -44 285 406 0 0 chr13 39250306 39250429 -62622740 + L2 LINE L2 3150 3272 0 21 0 0 0 chr13 39250528 39250549 -62622620 + AT_rich Low_complexity Low_complexity 1 21 0 240 253 48 0 chr13 39250612 39250695 -62622474 + L1MC4 LINE L1 6615 6701 -1341 558 230 18 0 chr13 39250858 39250971 -62622198 - FLAM_A SINE Alu -16 126 12 1949 143 3 3 chr13 39251679 39251972 -62621197 + AluSx SINE Alu 4 296 -16 21 0 0 0 chr13 39252070 39252091 -62621078 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 36 10 chr13 39254439 39254634 -62618535 + MLT1E LTR MaLR 41 240 -353 301 336 90 36 chr13 39254997 39255274 -62617895 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr13 39255598 39255658 -62617511 + (TA)n Simple_repeat Simple_repeat 1 62 0 354 23 0 0 chr13 39256985 39257028 -62616141 + (TG)n Simple_repeat Simple_repeat 2 44 0 1295 184 19 99 chr13 39257059 39257424 -62615745 - MLT2C1 LTR ERVL -61 336 1 257 75 25 0 chr13 39257440 39257480 -62615689 + (TA)n Simple_repeat Simple_repeat 1 41 0 22 35 0 0 chr13 39257926 39257955 -62615214 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr13 39259071 39259118 -62614051 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 39259130 39259162 -62614007 + AT_rich Low_complexity Low_complexity 1 32 0 1544 151 125 20 chr13 39259283 39259588 -62613581 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr13 39259938 39259966 -62613203 + AT_rich Low_complexity Low_complexity 1 28 0 638 260 51 46 chr13 39260991 39261187 -62611982 + L2 LINE L2 2339 2535 -779 801 220 13 0 chr13 39261187 39261346 -62611823 + MER2 DNA MER2_type 1 161 -184 375 144 0 0 chr13 39261354 39261424 -62611745 + L1M2 LINE L1 5594 5663 -493 402 148 0 37 chr13 39261433 39261514 -62611655 + MER2 DNA MER2_type 188 265 -80 353 231 71 156 chr13 39262261 39262426 -62610743 - MER58B DNA MER1_type -2080 340 163 1958 138 0 25 chr13 39262426 39262746 -62610423 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 39262746 39262757 -62610412 - MER58B DNA MER1_type -2257 163 153 2039 132 0 0 chr13 39262757 39263086 -62610083 + AluSx SINE Alu 1 312 0 353 231 71 156 chr13 39263086 39263146 -62610023 - MER58B DNA MER1_type -2267 153 6 1861 312 31 18 chr13 39263259 39263939 -62609230 + L1MA6 LINE L1 399 1087 -6479 1382 231 22 70 chr13 39264121 39264293 -62608876 + L1MA6 LINE L1 2696 2875 -4691 1551 225 0 3 chr13 39264293 39264604 -62608565 + AluJb SINE Alu 1 310 -2 1382 231 22 70 chr13 39264604 39264995 -62608174 + L1MA6 LINE L1 2875 3406 -4160 812 153 0 24 chr13 39264988 39265139 -62608030 + L1PA16 LINE L1 5898 6148 -18 * 423 78 0 65 chr13 39265139 39265212 -62607957 + L1PA16 LINE L1 6095 6166 0 812 153 0 24 chr13 39265212 39265231 -62607938 + L1PA16 LINE L1 6148 6166 0 3102 237 15 39 chr13 39265242 39265549 -62607620 + L1MA6 LINE L1 3293 3606 -3959 676 118 18 0 chr13 39265549 39265659 -62607510 + L1MA1 LINE L1 6187 6298 -4 3102 237 15 39 chr13 39265659 39266515 -62606654 + L1MA6 LINE L1 3606 4434 -3131 1896 203 56 33 chr13 39266502 39266706 -62606463 + L1PB4 LINE L1 5697 5895 -261 * 1637 123 25 4 chr13 39266706 39266949 -62606220 + AluSx SINE Alu 54 301 -11 1896 203 56 33 chr13 39266949 39267193 -62605976 + L1PB4 LINE L1 5895 6155 -1 10312 196 17 21 chr13 39267196 39270241 -62602928 + L1MA6 LINE L1 4447 7479 -240 331 140 18 0 chr13 39270246 39270303 -62602866 + L1MB8 LINE L1 5932 5989 -189 912 148 28 22 chr13 39270775 39270957 -62602212 + L1MB8 LINE L1 5996 6178 0 2277 198 9 0 chr13 39271485 39271929 -62601240 + L1M1 LINE L1 470 917 -6648 586 292 5 10 chr13 39271945 39272140 -62601029 - L1P LINE L1 -1543 4603 4410 630 183 39 10 chr13 39272283 39272429 -62600740 + MSTA LTR MaLR 1 163 -294 414 0 0 0 chr13 39272429 39272475 -62600694 + (TA)n Simple_repeat Simple_repeat 2 47 0 6463 83 20 0 chr13 39272485 39273689 -62599480 - L1PA7 LINE L1 -30 6124 4893 1871 108 0 0 chr13 39273685 39273962 -62599207 + L1PA7 LINE L1 4591 4867 -1279 * 1325 191 29 0 chr13 39273963 39274209 -62598960 + MSTA LTR MaLR 159 411 -17 271 143 48 0 chr13 39274278 39274341 -62598828 + (TATATG)n Simple_repeat Simple_repeat 4 69 0 22 0 0 0 chr13 39274385 39274407 -62598762 + AT_rich Low_complexity Low_complexity 1 22 0 1057 307 52 28 chr13 39275571 39276073 -62597096 - HERV16 LTR ERVL -2909 2087 1574 1429 351 57 32 chr13 39276428 39277454 -62595715 - HERV16 LTR ERVL -3894 1102 52 547 359 45 0 chr13 39277581 39277801 -62595368 - LTR16A LTR ERVL -113 337 108 821 271 54 24 chr13 39278453 39278921 -62594248 + MLT1F LTR MaLR 1 567 0 272 352 76 0 chr13 39279701 39279806 -62593363 + L2 LINE L2 3193 3305 -8 216 0 0 0 chr13 39279811 39279835 -62593334 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 737 282 0 0 chr13 39280195 39280383 -62592786 - AluSg/x SINE Alu -19 293 106 308 200 27 33 chr13 39280606 39280756 -62592413 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 242 209 20 40 chr13 39280780 39280928 -62592241 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 22 99 0 0 chr13 39280948 39281019 -62592150 + AT_rich Low_complexity Low_complexity 1 71 0 1866 105 0 0 chr13 39281409 39281657 -62591512 + AluY SINE Alu 55 302 -9 412 289 52 69 chr13 39281663 39282141 -62591028 + L1ME LINE L1 4610 5079 -1067 8202 217 36 18 chr13 39282302 39282691 -62590478 + L1PA16 LINE L1 2855 3235 -2931 240 35 0 0 chr13 39282691 39282720 -62590449 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 8202 217 36 18 chr13 39282720 39285479 -62587690 + L1PA16 LINE L1 3235 6058 -108 418 68 0 68 chr13 39285482 39285555 -62587614 + L1PA16 LINE L1 6097 6164 -2 515 260 37 94 chr13 39285589 39285970 -62587199 - L1MCa LINE L1 -5008 1418 1060 2528 150 50 2 chr13 39286550 39286969 -62586200 - Tigger2 DNA MER2_type 0 2718 2280 351 194 30 0 chr13 39286967 39287034 -62586135 - Tigger2 DNA MER2_type -2649 69 1 * 344 254 124 0 chr13 39287230 39287423 -62585746 + L1M4 LINE L1 3791 4007 -2139 26 50 0 0 chr13 39287448 39287488 -62585681 + AT_rich Low_complexity Low_complexity 1 40 0 809 292 106 22 chr13 39287592 39288082 -62585087 + L1ME LINE L1 5259 5789 -381 320 311 28 11 chr13 39288109 39288286 -62584883 + L1ME3A LINE L1 5675 5854 -316 2113 139 0 0 chr13 39289184 39289487 -62583682 + AluSx SINE Alu 1 303 -9 1382 192 54 61 chr13 39292482 39292873 -62580296 - MLT1B LTR MaLR 0 390 3 530 207 81 19 chr13 39292989 39293006 -62580163 + L1M4 LINE L1 4040 4055 -2091 183 42 0 0 chr13 39293006 39293030 -62580139 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 530 207 81 19 chr13 39293030 39293183 -62579986 + L1M4 LINE L1 4055 4224 -1922 672 196 8 15 chr13 39293243 39293376 -62579793 + MLT1A1 LTR MaLR 1 132 -233 326 301 68 24 chr13 39293380 39293586 -62579583 + L1M4 LINE L1 3949 4163 -1983 634 31 62 21 chr13 39294174 39294270 -62578899 + L1PA13 LINE L1 6058 6157 -6 574 221 159 34 chr13 39294623 39294984 -62578185 - MER61D LTR ERV1 -10 969 202 * 757 292 6 6 chr13 39294960 39295138 -62578031 - LTR28 LTR ERV1 -842 178 1 278 285 53 46 chr13 39295470 39295621 -62577548 + L2 LINE L2 3098 3249 -64 21 0 0 0 chr13 39296757 39296778 -62576391 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 39297275 39297303 -62575866 + AT_rich Low_complexity Low_complexity 1 28 0 1398 146 0 19 chr13 39298076 39298288 -62574881 - AluSx SINE Alu -103 209 2 15859 191 50 11 chr13 39298290 39304685 -62568484 - L1M1 LINE L1 -694 7027 380 2321 238 11 2 chr13 39304687 39305145 -62568024 - L1M1 LINE L1 -5732 1833 1372 * 2471 215 30 39 chr13 39305144 39305906 -62567263 - L1 LINE L1 -2598 3548 2794 1275 287 10 0 chr13 39305911 39306298 -62566871 + L1P LINE L1 2423 2813 -3333 591 283 113 35 chr13 39306305 39306496 -62566673 + L1ME3 LINE L1 5477 5652 -510 342 0 0 0 chr13 39306496 39306534 -62566635 + (TA)n Simple_repeat Simple_repeat 2 39 0 591 283 113 35 chr13 39306534 39306688 -62566481 + L1ME3 LINE L1 5652 5849 -313 367 270 86 11 chr13 39307410 39307584 -62565585 + L1MEc LINE L1 2187 2373 -4023 211 245 75 32 chr13 39308495 39308589 -62564580 + MIR SINE MIR 117 214 -48 24 0 0 0 chr13 39308890 39308914 -62564255 + AT_rich Low_complexity Low_complexity 1 24 0 1677 124 37 33 chr13 39309809 39310082 -62563087 - AluSx SINE Alu -17 295 22 211 205 0 80 chr13 39310713 39310825 -62562344 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 306 254 0 15 chr13 39311442 39311509 -62561660 + LTR67 LTR ERVL 65 130 -427 12146 171 46 15 chr13 39312258 39312761 -62560408 + Tigger1 DNA MER2_type 1 487 -1931 1924 135 96 6 chr13 39312761 39313095 -62560074 + THE1B LTR MaLR 1 364 0 12146 171 46 15 chr13 39313095 39314938 -62558231 + Tigger1 DNA MER2_type 487 2418 0 241 301 98 28 chr13 39314975 39315118 -62558051 + L3 LINE CR1 1349 1501 -76 825 206 69 0 chr13 39316782 39316957 -62556212 + L1PB4 LINE L1 5970 6156 0 280 216 100 0 chr13 39317509 39317603 -62555566 + L1M4 LINE L1 5680 5790 -394 28 48 0 0 chr13 39317762 39317804 -62555365 + AT_rich Low_complexity Low_complexity 1 42 0 375 257 24 38 chr13 39318395 39318605 -62554564 - L1MCa LINE L1 -4492 2449 2243 2417 72 0 3 chr13 39318607 39318912 -62554257 + AluY SINE Alu 1 304 -7 641 283 80 47 chr13 39319187 39319373 -62553796 - L1MCa LINE L1 -4924 1915 1737 2202 108 7 3 chr13 39319373 39319680 -62553489 - AluSx SINE Alu -4 308 1 641 283 80 47 chr13 39319680 39320451 -62552718 - L1MCa LINE L1 -5102 1737 830 587 297 123 18 chr13 39320678 39321069 -62552100 - L1MCa LINE L1 -5968 455 24 354 295 76 62 chr13 39321475 39321699 -62551470 - L1MEd LINE L1 -5046 1073 847 1056 285 24 17 chr13 39321801 39322261 -62550908 + L1MC1 LINE L1 4335 4797 -1349 960 118 0 7 chr13 39322261 39322397 -62550772 + AluSq/x SINE Alu 1 135 -177 1461 135 0 0 chr13 39322397 39322619 -62550550 + AluSg/x SINE Alu 85 306 -4 4983 209 26 23 chr13 39322621 39324162 -62549007 + L1MC1 LINE L1 4786 6328 -5 32 43 0 0 chr13 39324667 39324713 -62548456 + AT_rich Low_complexity Low_complexity 1 46 0 44 46 0 0 chr13 39324832 39324897 -62548272 + AT_rich Low_complexity Low_complexity 1 65 0 1575 291 80 22 chr13 39325158 39325745 -62547424 - MLT1E2 LTR MaLR 0 626 6 226 231 60 51 chr13 39325747 39325864 -62547305 - L1MEd LINE L1 -4937 1182 1065 212 329 58 36 chr13 39326803 39326940 -62546229 + MIR3 SINE MIR 65 204 -4 230 194 43 11 chr13 39327129 39327222 -62545947 + (TA)n Simple_repeat Simple_repeat 1 96 0 1956 140 7 0 chr13 39327563 39327856 -62545313 + AluSg SINE Alu 3 297 -13 2128 129 15 9 chr13 39328116 39328457 -62544712 + LTR3b LTR ERVK 158 500 0 1416 136 0 5 chr13 39328807 39328835 -62544334 + MER41C-int LTR ERV1 7545 7756 0 1437 87 0 0 chr13 39328835 39329020 -62544149 + HERVK14 LTR ERVK 5575 5759 -186 394 145 0 16 chr13 39329020 39329082 -62544087 + MER41C LTR ERV1 1 61 -493 515 48 0 0 chr13 39329082 39329145 -62544024 + HERVK14 LTR ERVK 5822 5884 -61 1971 133 33 15 chr13 39329168 39329500 -62543669 + LTR3b LTR ERVK 159 496 -4 304 98 0 0 chr13 39329501 39329542 -62543627 + LTR3b LTR ERVK 460 500 0 514 204 0 19 chr13 39329577 39329680 -62543489 - MER8 DNA MER2_type 0 239 139 1105 166 112 4 chr13 39329681 39329940 -62543229 - L1P LINE L1 -783 5363 5077 543 287 0 8 chr13 39329940 39330062 -62543107 - MER8 DNA MER2_type -118 121 1 28 29 0 0 chr13 39330108 39330143 -62543026 + AT_rich Low_complexity Low_complexity 1 35 0 2006 135 13 0 chr13 39330839 39331142 -62542027 - AluSp SINE Alu -2 311 5 1807 113 35 18 chr13 39331143 39331425 -62541744 - AluSq SINE Alu -2 311 25 626 202 99 45 chr13 39332030 39332273 -62540896 - LTR37B LTR ERV1 0 468 213 2176 115 3 0 chr13 39332539 39332843 -62540326 + AluSg1 SINE Alu 1 305 -4 205 262 0 0 chr13 39333609 39333651 -62539518 + MIR SINE MIR 28 69 -193 24 53 0 0 chr13 39333837 39333875 -62539294 + AT_rich Low_complexity Low_complexity 1 38 0 1710 142 15 0 chr13 39333924 39334198 -62538971 + AluSx SINE Alu 1 278 -34 705 56 0 0 chr13 39334205 39334295 -62538874 + (GGAA)n Simple_repeat Simple_repeat 3 92 0 205 212 136 0 chr13 39335494 39335560 -62537609 + MIR SINE MIR 156 230 -32 209 299 11 23 chr13 39336225 39336312 -62536857 + CT-rich Low_complexity Low_complexity 2 87 0 21 0 0 0 chr13 39337228 39337249 -62535920 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 39337299 39337322 -62535847 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 39337621 39337650 -62535519 + AT_rich Low_complexity Low_complexity 1 29 0 709 343 69 28 chr13 39339051 39339944 -62533225 - HERVL LTR ERVL -802 4714 3738 274 298 88 33 chr13 39340112 39340327 -62532842 + LTR50 LTR ERVL 458 684 -111 21 0 0 0 chr13 39341145 39341166 -62532003 + AT_rich Low_complexity Low_complexity 1 21 0 1023 179 10 10 chr13 39341202 39341397 -62531772 - L1PA15 LINE L1 -6 6810 6616 14706 232 15 19 chr13 39341402 39346240 -62526929 - L1PA15 LINE L1 -532 6285 1468 268 246 0 15 chr13 39346278 39346343 -62526826 - L1PA15 LINE L1 -5325 1462 1399 1985 143 3 0 chr13 39346943 39347237 -62525932 + AluSx SINE Alu 1 295 -17 30 0 0 0 chr13 39347464 39347494 -62525675 + AT_rich Low_complexity Low_complexity 1 30 0 239 231 10 67 chr13 39348469 39348573 -62524596 + L1M4 LINE L1 2935 3032 -3114 588 285 78 0 chr13 39348631 39348873 -62524296 + L1M4 LINE L1 3343 3603 -2543 324 148 0 0 chr13 39349361 39349415 -62523754 - Alu SINE Alu 0 302 249 1873 156 10 3 chr13 39349705 39350007 -62523162 - AluSx SINE Alu -8 304 1 227 217 250 0 chr13 39350720 39350812 -62522357 + MIR SINE MIR 146 260 -2 35 41 0 0 chr13 39352716 39352765 -62520404 + AT_rich Low_complexity Low_complexity 1 49 0 4555 151 64 1 chr13 39352965 39353746 -62519423 - L1PA16 LINE L1 -9 6157 5328 4546 143 45 16 chr13 39353814 39354641 -62518528 + Tigger1 DNA MER2_type 1566 2416 -2 333 0 0 0 chr13 39354643 39354680 -62518489 + (TG)n Simple_repeat Simple_repeat 2 38 0 41 36 0 0 chr13 39354819 39354874 -62518295 + AT_rich Low_complexity Low_complexity 1 55 0 24 67 0 0 chr13 39355796 39355841 -62517328 + AT_rich Low_complexity Low_complexity 1 45 0 282 29 0 0 chr13 39356009 39356044 -62517125 + (TAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 39356442 39356463 -62516706 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 39357021 39357048 -62516121 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 39357148 39357179 -62515990 + AT_rich Low_complexity Low_complexity 1 31 0 2141 168 27 7 chr13 39357477 39358048 -62515121 - L1M1 LINE L1 -687 5618 5035 27 0 0 0 chr13 39358125 39358152 -62515017 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 39358513 39358534 -62514635 + AT_rich Low_complexity Low_complexity 1 21 0 2304 61 7 3 chr13 39358577 39358870 -62514299 + AluY SINE Alu 1 294 -17 24 32 0 0 chr13 39359992 39360023 -62513146 + AT_rich Low_complexity Low_complexity 1 31 0 365 306 106 17 chr13 39360026 39360206 -62512963 - MIR SINE MIR -2 260 65 23 68 0 0 chr13 39360238 39360282 -62512887 + AT_rich Low_complexity Low_complexity 1 44 0 1410 209 207 51 chr13 39360661 39361254 -62511915 - MER76 LTR ERV 0 688 3 407 218 90 64 chr13 39361272 39361460 -62511709 - MIR SINE MIR 0 262 70 21 36 0 0 chr13 39361529 39361557 -62511612 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 39361692 39361719 -62511450 + AT_rich Low_complexity Low_complexity 1 27 0 302 302 39 8 chr13 39361746 39361875 -62511294 + MER110 LTR ERV1 308 440 -51 24 32 0 0 chr13 39363162 39363193 -62509976 + AT_rich Low_complexity Low_complexity 1 31 0 1651 153 68 20 chr13 39363235 39363529 -62509640 + AluSx SINE Alu 3 310 -2 2179 108 0 7 chr13 39364024 39364331 -62508838 - AluSx SINE Alu -7 305 1 22 0 0 0 chr13 39365303 39365325 -62507844 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 39365667 39365691 -62507478 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 39369958 39369982 -62503187 + AT_rich Low_complexity Low_complexity 1 24 0 343 337 58 25 chr13 39370149 39370425 -62502744 + MLT1I LTR MaLR 63 347 -62 29 47 0 0 chr13 39370571 39370614 -62502555 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 39371082 39371105 -62502064 + AT_rich Low_complexity Low_complexity 1 23 0 214 321 25 12 chr13 39372589 39372670 -62500499 - MIR SINE MIR -6 256 175 1388 236 44 93 chr13 39374296 39374888 -62498281 + MLT1F1 LTR MaLR 5 567 0 25 31 0 0 chr13 39375379 39375411 -62497758 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 39376485 39376510 -62496659 + AT_rich Low_complexity Low_complexity 1 25 0 609 319 89 35 chr13 39376609 39377101 -62496068 - HAL1 LINE L1 -176 2331 1813 850 243 76 62 chr13 39377299 39377747 -62495422 + MLT1C LTR MaLR 5 458 -9 762 339 96 50 chr13 39377761 39378278 -62494891 - HAL1 LINE L1 -914 1593 1101 3725 78 19 13 chr13 39378278 39378805 -62494364 - L1PA13 LINE L1 -8 6155 5626 762 339 96 50 chr13 39378805 39379304 -62493865 - HAL1 LINE L1 -1406 1101 530 27 29 0 0 chr13 39379785 39379819 -62493350 + AT_rich Low_complexity Low_complexity 1 34 0 484 295 57 22 chr13 39379949 39380176 -62492993 - L1MB8 LINE L1 -3 6175 5941 2087 98 3 0 chr13 39380178 39380474 -62492695 + L1PA13 LINE L1 5863 6159 -4 333 314 25 25 chr13 39381386 39381507 -62491662 + L3 LINE CR1 597 717 -860 213 303 92 34 chr13 39382178 39382297 -62490872 + MIR SINE MIR 127 252 -10 1524 305 211 39 chr13 39382475 39384432 -62488737 - L2 LINE L2 -13 3300 994 218 400 0 15 chr13 39384788 39384918 -62488251 - L2 LINE L2 -2997 317 190 27 0 0 0 chr13 39384939 39384966 -62488203 + AT_rich Low_complexity Low_complexity 1 27 0 1122 335 10 5 chr13 39384981 39385378 -62487791 - LTR16A LTR ERVL 0 450 52 26 0 0 0 chr13 39385789 39385815 -62487354 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 39387112 39387134 -62486035 + AT_rich Low_complexity Low_complexity 1 22 0 233 397 71 7 chr13 39387151 39387292 -62485877 + L2 LINE L2 3101 3250 -22 369 0 0 0 chr13 39387389 39387430 -62485739 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr13 39389217 39389238 -62483931 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 39389859 39389883 -62483286 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 39390828 39390862 -62482307 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chr13 39391464 39391509 -62481660 + AT_rich Low_complexity Low_complexity 1 45 0 206 174 22 0 chr13 39391649 39391695 -62481474 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1015 290 69 36 chr13 39391711 39392177 -62480992 + L1MC3 LINE L1 94 574 -5471 240 246 42 34 chr13 39392165 39392283 -62480886 + L1MC3 LINE L1 2486 2604 -3960 * 4410 276 66 41 chr13 39392301 39393406 -62479763 + L1MC3 LINE L1 2650 3726 -2838 692 199 0 8 chr13 39393406 39393537 -62479632 - FLAM_C SINE Alu -2 131 2 4410 276 66 41 chr13 39393537 39394948 -62478221 + L1MC3 LINE L1 3726 5229 -1335 6942 216 18 6 chr13 39394951 39397659 -62475510 + L1PA16 LINE L1 1 5520 -1329 1474 144 16 23 chr13 39397659 39397916 -62475253 - THE1C LTR MaLR 0 375 121 1255 112 51 10 chr13 39397904 39398101 -62475068 - THE1C LTR MaLR -170 205 1 * 8797 146 60 28 chr13 39398101 39399631 -62473538 - THE1C-int LTR MaLR 0 1580 2 904 151 27 43 chr13 39399632 39399817 -62473352 - THE1C LTR MaLR 0 375 194 1855 149 55 32 chr13 39399821 39400167 -62473002 + THE1B LTR MaLR 1 457 0 945 188 10 56 chr13 39400173 39400370 -62472799 - THE1C LTR MaLR -187 188 1 4191 210 43 8 chr13 39400372 39401668 -62471501 + L1PA16 LINE L1 5518 6860 -9 1360 236 36 55 chr13 39401696 39402654 -62470515 + L1MC3 LINE L1 5220 8186 -17 359 275 44 150 chr13 39402839 39402990 -62470179 + MIR SINE MIR 18 129 -133 1960 145 3 0 chr13 39402990 39403286 -62469883 + AluSp SINE Alu 1 297 -16 359 275 44 150 chr13 39403286 39403407 -62469762 + MIR SINE MIR 129 261 -1 2320 99 3 0 chr13 39405092 39405396 -62467773 + AluSx SINE Alu 1 305 -7 254 176 54 14 chr13 39405444 39405518 -62467651 - MLT1L LTR MaLR -37 578 502 2273 110 0 0 chr13 39405939 39406238 -62466931 - AluSx SINE Alu -13 299 1 1247 295 14 19 chr13 39406263 39406633 -62466536 + MLT1E3 LTR MaLR 257 624 0 253 226 0 0 chr13 39406853 39406915 -62466254 + T-rich Low_complexity Low_complexity 1 62 0 1541 194 3 7 chr13 39406918 39407229 -62465940 + AluJo SINE Alu 1 310 0 29 0 0 0 chr13 39407346 39407375 -62465794 + AT_rich Low_complexity Low_complexity 1 29 0 266 326 37 22 chr13 39408948 39409083 -62464086 + MLT1I LTR MaLR 70 206 -203 243 135 0 0 chr13 39409285 39409322 -62463847 + MLT1I LTR MaLR 371 407 -2 229 286 41 41 chr13 39409702 39409800 -62463369 - L2 LINE L2 0 3313 3216 201 321 155 4 chr13 39410760 39410883 -62462286 + MIR SINE MIR 20 157 -63 2026 147 0 0 chr13 39411248 39411541 -62461628 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr13 39411901 39411925 -62461244 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 272 352 76 0 chr13 39411930 39412035 -62461134 - L2 LINE L2 -8 3305 3193 821 304 68 9 chr13 39412815 39413283 -62459886 - MLT1F LTR MaLR 0 567 1 547 359 45 0 chr13 39413935 39414155 -62459014 + LTR16A LTR ERVL 108 337 -113 1429 351 57 32 chr13 39414282 39415308 -62457861 + HERV16 LTR ERVL 52 1102 -3894 1057 307 52 28 chr13 39415663 39416165 -62457004 + HERV16 LTR ERVL 1574 2087 -2909 22 0 0 0 chr13 39417329 39417351 -62455818 + AT_rich Low_complexity Low_complexity 1 22 0 271 143 48 0 chr13 39417395 39417458 -62455711 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1325 191 29 0 chr13 39417527 39417773 -62455396 - MSTA LTR MaLR -17 411 159 1871 108 0 0 chr13 39417774 39418051 -62455118 - L1PA7 LINE L1 -1279 4867 4591 * 6514 81 20 0 chr13 39418047 39419251 -62453918 + L1PA7 LINE L1 4893 6124 -30 414 0 0 0 chr13 39419261 39419307 -62453862 + (TA)n Simple_repeat Simple_repeat 2 47 0 769 139 34 19 chr13 39419307 39419453 -62453716 - MSTA LTR MaLR -294 134 1 5517 119 7 29 chr13 39419596 39421384 -62451785 + L1PA15 LINE L1 4410 6164 -1 23 0 0 0 chr13 39421858 39421881 -62451288 + AT_rich Low_complexity Low_complexity 1 23 0 276 379 33 8 chr13 39422224 39422464 -62450705 + L2 LINE L2 2184 2429 -885 210 305 0 67 chr13 39422839 39422944 -62450225 - L2 LINE L2 -9 3304 3207 819 150 8 0 chr13 39423098 39423218 -62449951 - FLAM_C SINE Alu -19 124 4 2200 107 0 0 chr13 39423504 39423804 -62449365 + AluSc SINE Alu 1 300 -9 59 15 0 0 chr13 39424224 39424290 -62448879 + AT_rich Low_complexity Low_complexity 1 66 0 571 278 23 0 chr13 39424471 39424604 -62448565 + LTR16A LTR ERVL 50 185 -265 1069 342 40 27 chr13 39424627 39425177 -62447992 + HERV16 LTR ERVL 917 1473 -3523 234 155 19 117 chr13 39425250 39425353 -62447816 + MER52A LTR ERV1 1 93 -1662 1525 263 44 21 chr13 39425354 39425829 -62447340 + HERV16 LTR ERVL 1724 2209 -2787 218 191 0 16 chr13 39426127 39426190 -62446979 + (TA)n Simple_repeat Simple_repeat 2 63 0 34 72 0 0 chr13 39426215 39426284 -62446885 + AT_rich Low_complexity Low_complexity 1 69 0 2392 178 8 31 chr13 39426335 39426823 -62446346 + L1PA16 LINE L1 5683 6159 -7 1047 214 42 70 chr13 39426855 39427256 -62445913 - MER92B LTR ERV1 -54 582 193 644 338 62 8 chr13 39427766 39428006 -62445163 - MIR SINE MIR -3 259 7 21 0 0 0 chr13 39428414 39428435 -62444734 + AT_rich Low_complexity Low_complexity 1 21 0 845 224 60 104 chr13 39428795 39429179 -62443990 + MLT1A2 LTR MaLR 4 370 -4 202 294 118 0 chr13 39429620 39429705 -62443464 + MIR SINE MIR 64 158 -104 29 0 0 0 chr13 39430034 39430063 -62443106 + AT_rich Low_complexity Low_complexity 1 29 0 259 241 17 0 chr13 39430296 39430354 -62442815 + MER91B DNA MER1_type 14 72 -118 676 262 46 119 chr13 39430376 39430707 -62442462 - L2 LINE L2 -2315 999 706 1889 146 14 3 chr13 39430707 39431001 -62442168 + AluSx SINE Alu 1 297 -15 676 262 46 119 chr13 39431001 39431104 -62442065 - L2 LINE L2 -2608 706 597 335 220 34 11 chr13 39431196 39431317 -62441852 + MLT1D LTR MaLR 47 140 -269 420 323 101 16 chr13 39431405 39431783 -62441386 + L1M4 LINE L1 3932 4341 -1805 296 290 62 28 chr13 39431806 39431951 -62441218 + L1ME2 LINE L1 5989 6138 -26 225 65 0 0 chr13 39432239 39432270 -62440899 + (CA)n Simple_repeat Simple_repeat 1 31 0 629 252 189 25 chr13 39432580 39432898 -62440271 + MLT1D LTR MaLR 109 478 -27 370 372 85 45 chr13 39432901 39433326 -62439843 - L2 LINE L2 -396 2918 2477 21 57 0 0 chr13 39433435 39433470 -62439699 + AT_rich Low_complexity Low_complexity 1 35 0 2168 138 0 0 chr13 39433776 39434088 -62439081 + AluSx SINE Alu 1 312 0 277 145 32 0 chr13 39434948 39435010 -62438159 + GA-rich Low_complexity Low_complexity 3 66 0 1403 283 16 79 chr13 39435093 39435640 -62437529 - LTR40a LTR ERVL 0 519 7 1785 130 68 92 chr13 39436067 39436250 -62436919 - THE1B LTR MaLR -2 362 176 2059 98 31 0 chr13 39436250 39436536 -62436633 - AluY SINE Alu -16 295 1 1785 130 68 92 chr13 39436536 39436568 -62436601 - THE1B LTR MaLR -188 176 145 2162 127 3 0 chr13 39436568 39436875 -62436294 + AluSx SINE Alu 3 310 -2 1785 130 68 92 chr13 39436875 39437028 -62436141 - THE1B LTR MaLR -219 145 2 10935 105 9 7 chr13 39437029 39438238 -62434931 - THE1B-int LTR MaLR 0 1580 365 2777 7 0 0 chr13 39438238 39438543 -62434626 + AluYa5 SINE Alu 1 305 -6 10935 105 9 7 chr13 39438543 39438909 -62434260 - THE1B-int LTR MaLR -1215 365 1 1970 126 73 56 chr13 39438909 39438951 -62434218 - THE1B LTR MaLR 0 364 324 2206 95 16 0 chr13 39438951 39439255 -62433914 + AluSp SINE Alu 1 309 -4 1970 126 73 56 chr13 39439255 39439570 -62433599 - THE1B LTR MaLR -40 324 1 24 32 0 0 chr13 39439571 39439602 -62433567 + AT_rich Low_complexity Low_complexity 1 31 0 248 264 39 45 chr13 39440101 39440256 -62432913 - L1MC4 LINE L1 -197 7845 7692 1394 166 24 3 chr13 39440462 39440757 -62432412 + L1MA9 LINE L1 6012 6312 0 1090 294 81 18 chr13 39440841 39441395 -62431774 - L1ME3A LINE L1 -214 5956 5368 409 320 91 20 chr13 39441409 39441662 -62431507 - L1ME3A LINE L1 -836 5310 5040 350 275 122 18 chr13 39441754 39441976 -62431193 - L1ME3A LINE L1 -1289 4857 4613 333 289 113 16 chr13 39441983 39442076 -62431093 - L1ME3A LINE L1 -1599 4547 4465 252 0 0 0 chr13 39442076 39442104 -62431065 + (TA)n Simple_repeat Simple_repeat 2 29 0 2188 112 3 0 chr13 39442104 39442398 -62430771 - AluSg SINE Alu -15 295 1 333 289 113 16 chr13 39442398 39442497 -62430672 - L1ME3A LINE L1 -1680 4466 4335 28 48 0 0 chr13 39442655 39442697 -62430472 + AT_rich Low_complexity Low_complexity 1 42 0 5014 183 19 11 chr13 39442757 39443811 -62429358 + L1MA7 LINE L1 5196 6255 -36 21 0 0 0 chr13 39444078 39444099 -62429070 + AT_rich Low_complexity Low_complexity 1 21 0 1591 156 18 18 chr13 39444345 39444655 -62428514 - AluSq SINE Alu 0 310 1 1368 102 14 9 chr13 39444690 39444905 -62428264 - L1PA14 LINE L1 0 6161 5946 1785 240 70 26 chr13 39445017 39445600 -62427569 - L1MC3 LINE L1 -8 7777 7169 1451 215 109 25 chr13 39445611 39446095 -62427074 - L1MC3 LINE L1 -699 7086 6562 375 196 59 0 chr13 39446141 39446243 -62426926 - L1M LINE L1 -966 5378 5271 1682 263 44 58 chr13 39446259 39447167 -62426002 - L1M4 LINE L1 -1697 4449 3555 203 351 91 0 chr13 39447376 39447453 -62425716 + L2 LINE L2 3178 3261 -11 329 290 111 0 chr13 39447797 39447959 -62425210 - LTR37B LTR ERV1 -10 458 279 593 221 101 7 chr13 39447962 39448111 -62425058 - LTR40b LTR ERVL -2 460 298 237 262 33 0 chr13 39448173 39448234 -62424935 - MER67D LTR ERV1 -3 511 449 953 231 74 42 chr13 39448367 39448628 -62424541 - MER67D LTR ERV1 -78 436 192 2134 117 0 3 chr13 39448628 39448926 -62424243 + AluSx SINE Alu 2 298 -14 953 231 74 42 chr13 39448926 39448955 -62424214 - MER67D LTR ERV1 -322 192 165 284 317 0 0 chr13 39448956 39449031 -62424138 + G-rich Low_complexity Low_complexity 1 78 -26 3672 96 4 2 chr13 39449031 39449541 -62423628 - MER9 LTR ERVK 0 511 1 284 317 0 0 chr13 39449541 39449569 -62423600 + G-rich Low_complexity Low_complexity 77 104 0 728 206 0 7 chr13 39449570 39449725 -62423444 - MER67D LTR ERV1 -358 156 3 598 221 84 0 chr13 39449780 39449949 -62423220 - LTR40a LTR ERVL -279 183 3 2266 161 87 79 chr13 39449968 39450542 -62422627 + MER4A LTR ERV1 1 584 -80 2056 123 0 0 chr13 39450542 39450857 -62422312 - AluSc SINE Alu 0 317 3 2266 161 87 79 chr13 39450857 39450939 -62422230 + MER4A LTR ERV1 584 664 0 886 199 75 140 chr13 39451405 39452043 -62421126 - MER4A LTR ERV1 -2 697 79 195 42 0 0 chr13 39452043 39452067 -62421102 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 886 199 75 140 chr13 39452067 39452142 -62421027 - MER4A LTR ERV1 -620 79 1 788 271 158 17 chr13 39452291 39452638 -62420531 - MSTD LTR MaLR 0 396 1 582 217 0 8 chr13 39452954 39453074 -62420095 - AluJb SINE Alu -15 297 179 655 154 37 0 chr13 39453542 39453678 -62419491 + L1MA4A LINE L1 6160 6300 -3 1510 192 18 39 chr13 39453821 39454155 -62419014 - LTR47B LTR ERVL 0 443 117 1096 124 36 26 chr13 39454124 39454318 -62418851 - LTR47A LTR ERVL -256 196 1 * 31 44 0 0 chr13 39454511 39454556 -62418613 + AT_rich Low_complexity Low_complexity 1 45 0 551 223 26 104 chr13 39454807 39455000 -62418169 - MER4C LTR ERV1 -12 453 276 722 209 10 94 chr13 39455554 39455755 -62417414 + MER20 DNA MER1_type 36 219 0 9302 187 17 15 chr13 39456862 39458579 -62414590 + L1MA3 LINE L1 9 1728 -5837 334 220 44 11 chr13 39458574 39458665 -62414504 + L1MA3 LINE L1 5589 5682 -1883 * 16213 184 32 12 chr13 39458664 39458734 -62414435 + L1MA2 LINE L1 22 89 -7634 246 32 0 0 chr13 39458734 39458765 -62414404 + (CA)n Simple_repeat Simple_repeat 2 32 0 16213 184 32 12 chr13 39458765 39460600 -62412569 + L1MA2 LINE L1 89 1887 -5836 2250 86 10 0 chr13 39460600 39460891 -62412278 + AluSc SINE Alu 1 294 -15 16213 184 32 12 chr13 39460891 39466260 -62406909 + L1MA2 LINE L1 1887 7718 -5 6090 145 14 83 chr13 39466279 39468260 -62404909 + L1MA3 LINE L1 5676 7473 -251 2379 79 0 3 chr13 39468260 39468563 -62404606 + AluY SINE Alu 1 302 -9 6090 145 14 83 chr13 39468563 39468798 -62404371 + L1MA3 LINE L1 7473 7723 -1 24 32 0 0 chr13 39470839 39470870 -62402299 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 39471291 39471312 -62401857 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 39471405 39471429 -62401740 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 39473064 39473092 -62400077 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 39473281 39473302 -62399867 + AT_rich Low_complexity Low_complexity 1 21 0 383 273 23 26 chr13 39474540 39474710 -62398459 - L1MD2 LINE L1 -1 7803 6201 2723 117 9 26 chr13 39474742 39475196 -62397973 - L1PA13 LINE L1 0 6163 5718 252 175 53 18 chr13 39475197 39475254 -62397915 - L1MD2 LINE L1 -182 6177 6119 2121 113 3 3 chr13 39475332 39475625 -62397544 - AluSc SINE Alu -12 297 5 1967 149 0 3 chr13 39475638 39475934 -62397235 - AluSg SINE Alu -15 295 1 1309 195 27 37 chr13 39475983 39476311 -62396858 + L1MA8 LINE L1 5964 6288 -3 779 206 56 6 chr13 39477178 39477338 -62395831 - AluJb SINE Alu -15 297 130 250 317 64 32 chr13 39477394 39477675 -62395494 - HAL1b LINE L1 -838 510 221 1749 124 49 114 chr13 39477811 39478068 -62395101 - L1MA5 LINE L1 0 6300 6048 262 62 0 0 chr13 39478068 39478100 -62395069 - U2 snRNA snRNA -155 33 2 1749 124 49 114 chr13 39478100 39478239 -62394930 - L1MA5 LINE L1 -252 6048 5901 261 128 0 0 chr13 39479731 39479778 -62393391 + (TA)n Simple_repeat Simple_repeat 2 48 0 1996 118 0 27 chr13 39479838 39480135 -62393034 + AluSg SINE Alu 1 289 -21 884 321 56 48 chr13 39480792 39481349 -62391820 - MLT2E LTR ERVL -52 576 16 840 315 40 52 chr13 39482034 39482776 -62390393 + L2 LINE L2 2580 3313 0 26 93 0 0 chr13 39482825 39482900 -62390269 + AT_rich Low_complexity Low_complexity 1 75 0 657 245 20 0 chr13 39484017 39484168 -62389001 + L1MC1 LINE L1 6179 6332 -1 21 36 0 0 chr13 39484647 39484675 -62388494 + AT_rich Low_complexity Low_complexity 1 28 0 305 320 115 33 chr13 39485396 39485518 -62387651 + L2 LINE L2 3141 3272 0 26 19 6 0 chr13 39485663 39485728 -62387441 + AT_rich Low_complexity Low_complexity 1 33 0 2386 269 60 98 chr13 39486061 39487575 -62385594 + L1M4 LINE L1 5 1460 -5082 3004 207 31 15 chr13 39487596 39488276 -62384893 + L1MB5 LINE L1 5484 6174 0 2173 88 0 14 chr13 39489609 39489892 -62383277 + AluSg SINE Alu 14 292 -18 355 276 184 12 chr13 39489980 39490143 -62383026 + L2 LINE L2 3123 3313 0 21 0 0 0 chr13 39493610 39493631 -62379538 + AT_rich Low_complexity Low_complexity 1 21 0 497 273 122 42 chr13 39494240 39494739 -62378430 + L1M4 LINE L1 2411 2949 -3876 * 1271 239 16 10 chr13 39494738 39495047 -62378122 - L1M2 LINE L1 -535 5777 5467 405 125 88 0 chr13 39495047 39495127 -62378042 + L1MA8 LINE L1 6050 6136 -155 * 839 176 6 18 chr13 39495126 39495291 -62377878 - L1M2 LINE L1 -677 5491 5329 1523 231 25 39 chr13 39495292 39495782 -62377387 + L1MA9 LINE L1 5785 6267 -45 801 288 89 6 chr13 39496002 39496529 -62376640 + L1M4 LINE L1 3391 3961 -2683 391 216 45 11 chr13 39496536 39496624 -62376545 + MLT-int LTR MaLR 1321 1411 -324 2156 216 108 58 chr13 39496630 39497533 -62375636 - MLT-int LTR MaLR -171 1564 533 957 280 40 13 chr13 39497565 39497937 -62375232 - L1MA9 LINE L1 -38 6274 5893 2568 250 35 44 chr13 39497968 39499438 -62373731 - L1 LINE L1 -3210 3957 2495 786 311 8 12 chr13 39499437 39499688 -62373481 - L1 LINE L1 -5550 1618 1369 * 2139 307 95 33 chr13 39499836 39501135 -62372034 - L1 LINE L1 -5789 1379 1 1754 238 59 30 chr13 39501133 39501662 -62371507 - MLT1A1-int LTR MaLR -1191 544 1 * 254 260 0 52 chr13 39501680 39501757 -62371412 - MLT1A1-int LTR MaLR -1294 77 5 877 235 118 62 chr13 39501761 39502013 -62371156 - MLT1A1 LTR MaLR 0 365 143 1494 180 7 39 chr13 39502013 39502318 -62370851 - AluSx SINE Alu -17 295 1 877 235 118 62 chr13 39502318 39502470 -62370699 - MLT1A1 LTR MaLR -222 143 1 185 420 51 6 chr13 39502500 39502657 -62370512 - L2 LINE L2 -243 3029 2866 195 357 31 10 chr13 39502812 39502910 -62370259 - L2 LINE L2 -601 2713 2614 307 369 8 23 chr13 39502985 39503115 -62370054 - L2 LINE L2 -8 3264 3137 2197 42 4 0 chr13 39504000 39504260 -62368909 - AluY SINE Alu -37 274 14 6320 101 9 7 chr13 39504269 39505182 -62367987 - L1PA10 LINE L1 0 6168 5254 317 171 57 0 chr13 39505179 39505249 -62367920 + L1P LINE L1 3231 3304 -2842 * 2540 41 3 0 chr13 39505242 39505562 -62367607 + L1P LINE L1 4953 5273 -873 997 111 238 16 chr13 39505573 39505762 -62367407 + L1PA7 LINE L1 5923 6153 -1 * 3379 161 5 67 chr13 39505750 39506730 -62366439 + L1P LINE L1 3285 4125 -2021 281 188 0 0 chr13 39507283 39507347 -62365822 - L1MB7 LINE L1 -19 6165 6102 23 78 0 0 chr13 39507477 39507528 -62365641 + AT_rich Low_complexity Low_complexity 1 51 0 33 56 0 0 chr13 39508037 39508091 -62365078 + AT_rich Low_complexity Low_complexity 1 54 0 8622 240 37 31 chr13 39508145 39509392 -62363777 - L1MC3 LINE L1 -33 7752 6514 1795 120 4 0 chr13 39509392 39509651 -62363518 - AluSx SINE Alu -52 260 1 8622 240 37 31 chr13 39509651 39510612 -62362557 - L1MC3 LINE L1 -1271 6514 5514 1923 154 55 0 chr13 39510612 39510956 -62362213 - L1PB3 LINE L1 -1 6153 5791 8622 240 37 31 chr13 39510956 39511805 -62361364 - L1MC3 LINE L1 -2271 5514 4672 1102 264 93 11 chr13 39511775 39511857 -62361312 - L1MC3 LINE L1 -1988 4158 4084 * 9848 149 6 2 chr13 39511857 39514338 -62358831 - L1PA10 LINE L1 -2 6166 3675 1102 264 93 11 chr13 39514338 39514718 -62358451 - L1MC3 LINE L1 -2062 4084 3658 21 57 0 0 chr13 39515535 39515570 -62357599 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr13 39516039 39516072 -62357097 + AT_rich Low_complexity Low_complexity 1 33 0 348 24 0 0 chr13 39516152 39516193 -62356976 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 182 289 33 66 chr13 39516902 39517023 -62356146 - MIR SINE MIR -98 164 48 269 87 0 22 chr13 39519308 39519354 -62353815 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 221 163 20 0 chr13 39519355 39519404 -62353765 + GA-rich Low_complexity Low_complexity 1 50 0 377 222 0 11 chr13 39519449 39519539 -62353630 - L1M LINE L1 -765 5401 5313 21 57 0 0 chr13 39519561 39519596 -62353573 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 39519751 39519771 -62353398 + (A)n Simple_repeat Simple_repeat 1 20 0 697 185 0 30 chr13 39519840 39519975 -62353194 - L1M4 LINE L1 -1983 4232 4102 1162 287 67 40 chr13 39519985 39521086 -62352083 - L1MEc LINE L1 -3444 2771 1684 1422 277 93 48 chr13 39521087 39521697 -62351472 - MER76 LTR ERV -30 658 21 1011 267 91 16 chr13 39521713 39522338 -62350831 - L1MEc LINE L1 -4724 1672 1001 342 219 15 80 chr13 39522389 39522471 -62350698 - L1MEc LINE L1 -5502 894 823 2168 78 13 33 chr13 39522471 39522777 -62350392 - AluY SINE Alu -10 301 2 342 219 15 80 chr13 39522777 39522831 -62350338 - L1MEc LINE L1 -5573 823 767 279 161 36 18 chr13 39522869 39522925 -62350244 + MER20 DNA MER1_type 163 219 0 295 290 20 0 chr13 39522926 39523026 -62350143 + L1MEc LINE L1 633 734 -5662 33 66 0 0 chr13 39523147 39523208 -62349961 + AT_rich Low_complexity Low_complexity 1 61 0 534 222 111 18 chr13 39523288 39523513 -62349656 + Charlie7 DNA MER1_type 1591 1836 -776 515 238 138 32 chr13 39523543 39523804 -62349365 + Charlie7 DNA MER1_type 2169 2477 -135 2011 132 0 0 chr13 39523804 39524110 -62349059 - AluSx SINE Alu 0 309 4 515 238 138 32 chr13 39524110 39524188 -62348981 + Charlie7 DNA MER1_type 2477 2545 -67 226 235 0 82 chr13 39524193 39524291 -62348878 - L1MC4 LINE L1 -1339 6703 6614 * 276 250 23 0 chr13 39524215 39524303 -62348866 + L1MC4 LINE L1 6614 6703 -1339 23 0 0 0 chr13 39524529 39524552 -62348617 + AT_rich Low_complexity Low_complexity 1 23 0 346 337 79 20 chr13 39526437 39526639 -62346530 + L2 LINE L2 2034 2247 -1067 783 261 28 19 chr13 39527797 39528008 -62345161 + MER20 DNA MER1_type 6 218 -1 23 33 0 0 chr13 39528722 39528752 -62344417 + AT_rich Low_complexity Low_complexity 1 30 0 218 260 29 48 chr13 39528831 39528935 -62344234 - L2 LINE L2 -90 3223 3122 409 297 68 106 chr13 39529049 39529298 -62343871 - L2 LINE L2 -250 3063 2806 1967 108 9 52 chr13 39529298 39529623 -62343546 + AluSx SINE Alu 1 311 -1 409 297 68 106 chr13 39529623 39530015 -62343154 - L2 LINE L2 -507 2806 2451 2213 75 36 16 chr13 39530640 39530945 -62342224 + AluY SINE Alu 1 311 0 8417 207 12 20 chr13 39531078 39533199 -62339970 - L1P LINE L1 -811 5335 3229 4494 142 9 9 chr13 39533200 39533948 -62339221 + L1PA15 LINE L1 5371 6118 -47 2515 63 0 0 chr13 39534255 39534558 -62338611 - AluY SINE Alu -8 303 1 201 169 34 17 chr13 39535553 39535612 -62337557 + (TTTAA)n Simple_repeat Simple_repeat 5 64 0 212 103 51 0 chr13 39536079 39536118 -62337051 + (CATA)n Simple_repeat Simple_repeat 3 43 0 272 290 59 24 chr13 39536207 39536376 -62336793 - L1M4 LINE L1 -2168 3978 3804 190 408 115 27 chr13 39537421 39537681 -62335488 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 39537753 39537782 -62335387 + AT_rich Low_complexity Low_complexity 1 29 0 1685 220 46 23 chr13 39538128 39538560 -62334609 - L1MA10 LINE L1 -2 6332 5891 447 183 58 8 chr13 39539731 39539851 -62333318 - THE1C LTR MaLR -1 374 249 1779 153 0 13 chr13 39540335 39540635 -62332534 - AluSx SINE Alu -16 296 1 559 288 38 38 chr13 39540635 39540847 -62332322 - MIR SINE MIR -10 252 41 470 248 0 9 chr13 39540965 39541078 -62332091 + MER5A DNA MER1_type 2 113 -76 2024 111 0 0 chr13 39542655 39542957 -62330212 + AluSg SINE Alu 1 302 0 2145 125 0 0 chr13 39544105 39544400 -62328769 - AluSx SINE Alu -17 295 1 21 0 0 0 chr13 39544410 39544431 -62328738 + AT_rich Low_complexity Low_complexity 1 21 0 2044 201 77 64 chr13 39544688 39544751 -62328418 - MLT2B3 LTR ERVL 0 554 493 194 0 39 0 chr13 39544751 39544777 -62328392 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 2044 201 77 64 chr13 39544777 39545260 -62327909 - MLT2B3 LTR ERVL -61 493 1 11166 189 88 35 chr13 39545351 39547696 -62325473 + L1M1 LINE L1 10 2478 -5087 6582 159 10 51 chr13 39547697 39548598 -62324571 + L1M1 LINE L1 5410 6265 -1376 303 132 19 0 chr13 39548598 39548651 -62324518 - MADE1 DNA Mariner -25 55 2 6582 159 10 51 chr13 39548651 39549260 -62323909 + L1M1 LINE L1 6265 6898 -743 5691 109 8 2 chr13 39549262 39550107 -62323062 + L1PB1 LINE L1 5302 6151 0 930 317 162 31 chr13 39550136 39550808 -62322361 - L2 LINE L2 -1149 2165 1406 709 181 17 17 chr13 39550987 39551164 -62322005 + L1MA1 LINE L1 6126 6302 0 21 36 0 0 chr13 39551164 39551192 -62321977 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 39551813 39551841 -62321328 + AT_rich Low_complexity Low_complexity 1 28 0 438 95 81 0 chr13 39552234 39552308 -62320861 - MADE1 DNA Mariner 0 80 1 332 215 61 68 chr13 39553677 39553840 -62319329 - MER104 DNA Tc2 -5 175 14 2151 117 0 3 chr13 39554304 39554602 -62318567 - AluSx SINE Alu -14 298 2 2160 66 0 14 chr13 39554815 39555128 -62318041 + AluY SINE Alu 1 309 0 243 198 94 31 chr13 39555159 39555255 -62317914 - L1M4 LINE L1 -1718 4428 4327 405 299 76 12 chr13 39555285 39555587 -62317582 - MERVL LTR ERVL -2743 2742 2422 568 359 0 15 chr13 39555821 39556016 -62317153 - MERVL LTR ERVL -3552 1444 1253 412 374 53 0 chr13 39556907 39557169 -62316000 - LTR16B LTR ERVL -4 460 185 1289 115 65 5 chr13 39557196 39557396 -62315773 - LTR12 LTR ERV1 -133 581 370 332 151 57 85 chr13 39557396 39557484 -62315685 - LTR30 LTR ERV1 -75 624 229 3571 140 69 46 chr13 39557485 39558424 -62314745 - pTR5 LTR ERV1 -410 2028 735 207 98 49 24 chr13 39559881 39559922 -62313247 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 39560179 39560208 -62312961 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 39561209 39561233 -62311936 + AT_rich Low_complexity Low_complexity 1 24 0 1710 120 12 100 chr13 39561286 39561627 -62311542 - AluSx SINE Alu -1 311 1 26 64 0 0 chr13 39561728 39561775 -62311394 + AT_rich Low_complexity Low_complexity 1 47 0 328 271 37 17 chr13 39562364 39562534 -62310635 + L1M4 LINE L1 101 498 -6357 459 276 78 12 chr13 39562909 39563242 -62309927 + L1M4 LINE L1 4016 4370 -2587 1788 149 60 41 chr13 39563304 39563672 -62309497 - THE1C LTR MaLR 0 375 1 860 325 40 27 chr13 39563964 39564339 -62308830 + L2 LINE L2 1859 2238 -1076 332 425 18 4 chr13 39564752 39564980 -62308189 - MER115 DNA AcHobo -440 253 23 242 414 44 20 chr13 39565070 39565273 -62307896 + L2 LINE L2 2733 2940 -374 662 232 72 57 chr13 39565273 39565553 -62307616 + L1M4b LINE L1 1298 1591 -4899 568 340 59 31 chr13 39565566 39565922 -62307247 + L1M4b LINE L1 1648 2013 -4946 1101 135 41 86 chr13 39567284 39567379 -62305790 - Tigger7 DNA MER2_type 0 2491 2393 225 0 0 0 chr13 39567379 39567404 -62305765 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 324 0 0 0 chr13 39567403 39567439 -62305730 + (CA)n Simple_repeat Simple_repeat 2 37 0 1101 135 41 86 chr13 39567404 39567610 -62305559 - Tigger7 DNA MER2_type -98 2393 2237 204 161 48 16 chr13 39567858 39567920 -62305249 + (TATAA)n Simple_repeat Simple_repeat 5 68 0 1699 264 98 22 chr13 39567928 39568736 -62304433 - L1ME2 LINE L1 0 6558 5690 1082 303 76 40 chr13 39568786 39570220 -62302949 - L1ME2 LINE L1 -3060 3480 2024 225 0 0 0 chr13 39570257 39570282 -62302887 + (A)n Simple_repeat Simple_repeat 1 25 0 240 185 0 0 chr13 39570322 39570376 -62302793 + (TATG)n Simple_repeat Simple_repeat 2 55 0 542 301 62 39 chr13 39570376 39570761 -62302408 - L1ME2 LINE L1 -4577 1963 1570 4917 182 54 24 chr13 39570773 39571938 -62301231 - L1MC1 LINE L1 -18 6315 5122 673 278 85 67 chr13 39571967 39572650 -62300519 - L1ME2 LINE L1 -5003 1527 924 21 82 0 0 chr13 39573837 39573886 -62299283 + AT_rich Low_complexity Low_complexity 1 49 0 32 67 0 0 chr13 39574012 39574072 -62299097 + AT_rich Low_complexity Low_complexity 1 60 0 623 289 127 3 chr13 39574202 39574517 -62298652 - L1ME1 LINE L1 -57 6109 5756 1417 314 112 28 chr13 39574529 39575554 -62297615 + L2 LINE L2 2182 3295 -18 27 92 0 0 chr13 39575640 39575716 -62297453 + AT_rich Low_complexity Low_complexity 1 76 0 21 71 0 0 chr13 39576288 39576330 -62296839 + AT_rich Low_complexity Low_complexity 1 42 0 910 295 73 36 chr13 39577594 39578238 -62294931 + L1MEc LINE L1 1127 1794 -4602 276 30 0 0 chr13 39578508 39578541 -62294628 + (TG)n Simple_repeat Simple_repeat 2 34 0 242 226 17 0 chr13 39578541 39578608 -62294561 + L1ME2 LINE L1 6092 6159 -3 2939 140 32 4 chr13 39579598 39580063 -62293106 - MER1A DNA MER1_type 0 529 52 364 265 28 77 chr13 39580469 39580650 -62292519 - AluSg/x SINE Alu 0 302 131 281 98 0 20 chr13 39580707 39580758 -62292411 + (TA)n Simple_repeat Simple_repeat 2 51 0 267 220 5 58 chr13 39580992 39581100 -62292069 + MLT1J2 LTR MaLR 73 196 -315 440 342 19 6 chr13 39582015 39582173 -62290996 + MLT1I LTR MaLR 110 269 -140 272 233 0 107 chr13 39582231 39582334 -62290835 + MLT1I LTR MaLR 280 371 -38 567 228 112 53 chr13 39582700 39582906 -62290263 - MER58A DNA MER1_type -6 218 1 263 280 32 0 chr13 39583108 39583201 -62289968 + MLT1J2 LTR MaLR 52 147 -303 3087 183 38 8 chr13 39583709 39584360 -62288809 - L1MB1 LINE L1 -4 6185 5515 50 65 0 0 chr13 39584567 39584659 -62288510 + AT_rich Low_complexity Low_complexity 1 92 0 29 60 0 0 chr13 39585352 39585402 -62287767 + AT_rich Low_complexity Low_complexity 1 50 0 211 277 12 24 chr13 39585432 39585515 -62287654 + (TA)n Simple_repeat Simple_repeat 1 82 0 253 374 140 0 chr13 39585932 39586111 -62287058 + L3b LINE CR1 1325 1528 -55 561 258 39 64 chr13 39587168 39587498 -62285671 + L1MC4 LINE L1 7697 8018 -24 30 27 0 0 chr13 39587499 39587536 -62285633 + AT_rich Low_complexity Low_complexity 1 37 0 269 323 193 39 chr13 39587604 39588168 -62285001 - L2 LINE L2 -568 2746 2096 226 283 0 22 chr13 39588171 39588263 -62284906 - L1MC4 LINE L1 -1339 6703 6614 * 271 307 0 0 chr13 39588246 39588334 -62284835 + L1MC4 LINE L1 6615 6702 -1340 261 211 0 0 chr13 39588336 39588393 -62284776 + (CA)n Simple_repeat Simple_repeat 2 58 0 3364 257 51 15 chr13 39588474 39590509 -62282660 + L1MB8 LINE L1 4066 6172 -6 239 415 42 4 chr13 39590509 39590750 -62282419 - L2 LINE L2 -1310 2004 1755 1573 152 48 24 chr13 39590846 39591182 -62281987 - L1MA8 LINE L1 -5 6286 5943 198 373 80 20 chr13 39591272 39591422 -62281747 - L2 LINE L2 -1760 1554 1396 21 0 0 0 chr13 39591514 39591535 -62281634 + AT_rich Low_complexity Low_complexity 1 21 0 188 273 0 36 chr13 39591537 39591592 -62281577 - L2 LINE L2 -2047 1267 1215 1784 122 0 85 chr13 39592443 39592762 -62280407 + AluSx SINE Alu 3 294 -18 365 0 0 22 chr13 39592788 39592834 -62280335 + (TA)n Simple_repeat Simple_repeat 1 45 0 229 366 36 27 chr13 39592851 39593072 -62280097 + MLT1J LTR MaLR 246 468 -43 1326 211 19 88 chr13 39593169 39593543 -62279626 - MLT1A1 LTR MaLR -7 358 11 261 0 0 0 chr13 39593568 39593597 -62279572 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1894 141 70 17 chr13 39594216 39594571 -62278598 - THE1C LTR MaLR -1 374 1 266 228 0 98 chr13 39594784 39594876 -62278293 - MER5B DNA MER1_type -20 158 76 923 159 61 0 chr13 39595059 39595222 -62277947 - THE1C LTR MaLR -175 200 28 1751 160 10 13 chr13 39595831 39596131 -62277038 - AluSx SINE Alu -13 299 1 22 0 0 0 chr13 39597458 39597480 -62275689 + AT_rich Low_complexity Low_complexity 1 22 0 3252 199 39 21 chr13 39597911 39598638 -62274531 - HERVL74 LTR ERVL -1382 4303 3564 * 4075 185 34 26 chr13 39598631 39599437 -62273732 - HERVL74 LTR ERVL -2280 3405 2594 2269 206 58 16 chr13 39599437 39600068 -62273101 - HERVL74 LTR ERVL -4960 725 1 840 260 15 0 chr13 39600068 39600264 -62272905 - MER74C LTR ERVL 0 460 262 1422 207 19 7 chr13 39600304 39600574 -62272595 - MER74C LTR ERVL -187 273 1 22 88 0 0 chr13 39601047 39601104 -62272065 + AT_rich Low_complexity Low_complexity 1 57 0 437 311 104 45 chr13 39601438 39601910 -62271259 + L1M4 LINE L1 2681 3180 -2966 43 35 0 0 chr13 39602007 39602064 -62271105 + AT_rich Low_complexity Low_complexity 1 57 0 1679 136 43 0 chr13 39602317 39602575 -62270594 + AluSx SINE Alu 1 269 -43 275 0 0 28 chr13 39602578 39602614 -62270555 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 359 278 98 20 chr13 39603109 39603364 -62269805 + L1M4 LINE L1 4199 4473 -1673 4229 124 12 4 chr13 39603672 39604363 -62268806 - L1MA2 LINE L1 0 6304 5609 1705 161 18 12 chr13 39604363 39604698 -62268471 - L1M1 LINE L1 -4249 3316 2980 928 238 30 30 chr13 39604691 39604922 -62268247 - L1M1 LINE L1 -7084 481 251 * 297 336 128 13 chr13 39604924 39605150 -62268019 - L2 LINE L2 -1357 1957 1706 287 364 45 0 chr13 39605344 39605498 -62267671 - L2 LINE L2 -1627 1687 1527 21 0 0 0 chr13 39606725 39606746 -62266423 + AT_rich Low_complexity Low_complexity 1 21 0 896 261 134 43 chr13 39611866 39612329 -62260840 + MLT1D LTR MaLR 1 505 0 321 327 111 25 chr13 39612333 39612495 -62260674 + HAL1 LINE L1 423 598 -1909 26 0 0 0 chr13 39612609 39612635 -62260534 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chr13 39612910 39612953 -62260216 + AT_rich Low_complexity Low_complexity 1 43 0 440 284 90 22 chr13 39613051 39613319 -62259850 + HAL1 LINE L1 1180 1465 -1042 255 215 0 0 chr13 39613319 39613384 -62259785 + GA-rich Low_complexity Low_complexity 2 66 0 24 32 0 0 chr13 39613406 39613437 -62259732 + AT_rich Low_complexity Low_complexity 1 31 0 411 258 75 32 chr13 39613731 39613917 -62259252 + HAL1 LINE L1 1685 1878 -629 293 240 0 19 chr13 39614050 39614154 -62259015 + HAL1 LINE L1 2101 2202 -305 797 192 7 120 chr13 39614370 39614661 -62258508 + L1M4 LINE L1 860 1117 -5425 285 87 0 0 chr13 39615114 39615160 -62258009 + L1PA6 LINE L1 6107 6152 -2 21 0 0 0 chr13 39615320 39615341 -62257828 + AT_rich Low_complexity Low_complexity 1 21 0 532 243 9 0 chr13 39615508 39615619 -62257550 + AluJ SINE Alu 5 116 -186 403 250 44 19 chr13 39616196 39616356 -62256813 + L1M4 LINE L1 3 166 -6376 3047 258 53 35 chr13 39616416 39618164 -62255005 + L1M4 LINE L1 348 2158 -4488 378 262 78 7 chr13 39618222 39618363 -62254806 + MER58 DNA MER1_type 2267 2417 -3 281 294 41 46 chr13 39618611 39618808 -62254361 - HAL1 LINE L1 -24 2483 2288 1108 176 0 0 chr13 39619302 39619490 -62253679 + AluJ SINE Alu 104 291 -21 1130 162 0 0 chr13 39619534 39619719 -62253450 - AluSx SINE Alu -127 185 1 2804 3 0 0 chr13 39619775 39620080 -62253089 + AluYa5 SINE Alu 1 305 -6 22 0 0 0 chr13 39621556 39621578 -62251591 + AT_rich Low_complexity Low_complexity 1 22 0 1323 227 97 3 chr13 39622276 39622628 -62250541 + L1MA4 LINE L1 5909 6293 -7 23 33 0 0 chr13 39622629 39622659 -62250510 + AT_rich Low_complexity Low_complexity 1 30 0 1572 208 64 124 chr13 39622673 39623312 -62249857 + MER77 LTR ERV1 5 605 0 21 0 0 0 chr13 39623569 39623590 -62249579 + AT_rich Low_complexity Low_complexity 1 21 0 624 288 58 35 chr13 39623592 39623818 -62249351 - MIR SINE MIR -4 258 28 394 352 102 0 chr13 39623821 39623997 -62249172 - MIR SINE MIR -16 246 53 25 75 0 0 chr13 39624143 39624196 -62248973 + AT_rich Low_complexity Low_complexity 1 53 0 530 296 66 64 chr13 39625793 39626305 -62246864 - MLT1F1 LTR MaLR -3 585 69 1932 128 0 0 chr13 39626331 39626605 -62246564 - AluSx SINE Alu -14 298 25 555 133 83 61 chr13 39626614 39626795 -62246374 + HERVKC4 LTR ERVK 2664 2848 -2414 183 80 0 0 chr13 39627025 39627050 -62246119 + (GA)n Simple_repeat Simple_repeat 1 25 0 1199 273 134 27 chr13 39627442 39628274 -62244895 + L1MCc LINE L1 831 1752 -4892 351 0 0 0 chr13 39628508 39628547 -62244622 + (A)n Simple_repeat Simple_repeat 1 39 0 1042 275 62 26 chr13 39628651 39629571 -62243598 + L1MCc LINE L1 2387 3304 -3637 639 289 82 26 chr13 39629550 39629930 -62243239 + L1MCc LINE L1 17 417 -6006 * 664 233 36 22 chr13 39630212 39630435 -62242734 - L1MEc LINE L1 -4307 2089 1864 230 241 0 0 chr13 39630491 39630549 -62242620 - L1MEc LINE L1 -4636 1760 1703 6641 76 2 0 chr13 39630567 39631843 -62241326 - L1PA7 LINE L1 -11 6143 4858 4128 102 51 5 chr13 39631843 39632473 -62240696 + L1PA7 LINE L1 4185 4843 -1303 2373 288 99 41 chr13 39632467 39634060 -62239109 - L1MEc LINE L1 -4675 1721 37 * 6961 135 87 100 chr13 39634152 39635874 -62237295 + pTR5 LTR ERV1 740 2438 0 330 26 0 0 chr13 39636531 39636570 -62236599 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr13 39637145 39637167 -62236002 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr13 39637235 39637296 -62235873 + AT_rich Low_complexity Low_complexity 1 61 0 4134 181 29 19 chr13 39637577 39638102 -62235067 + L1MC1 LINE L1 5434 5971 -362 2271 108 0 0 chr13 39638102 39638407 -62234762 + AluY SINE Alu 3 307 -4 4134 181 29 19 chr13 39638407 39638717 -62234452 + L1MC1 LINE L1 5971 6277 -56 631 273 57 120 chr13 39638824 39639384 -62233785 + L1MC4a LINE L1 3652 4176 -1970 26 30 0 0 chr13 39639574 39639607 -62233562 + AT_rich Low_complexity Low_complexity 1 33 0 274 281 56 12 chr13 39639652 39639812 -62233357 + L1MC4a LINE L1 4442 4608 -1538 2159 95 0 26 chr13 39639863 39640169 -62233000 + AluSq SINE Alu 3 300 -13 204 356 55 0 chr13 39640816 39640889 -62232280 + L2 LINE L2 3228 3304 -9 10905 239 22 23 chr13 39641124 39644588 -62228581 - L1P4 LINE L1 -624 5542 2087 1037 292 59 29 chr13 39644633 39644995 -62228174 + L1MC4a LINE L1 5483 5833 -1975 1846 150 142 18 chr13 39644995 39645376 -62227793 - MSTA LTR MaLR 0 428 1 1037 292 59 29 chr13 39645376 39646097 -62227072 + L1MC4a LINE L1 5833 6627 -1181 696 263 19 5 chr13 39646132 39646341 -62226828 + L1MD3 LINE L1 7088 7299 -696 357 253 0 21 chr13 39646349 39646444 -62226725 + MLT1F1 LTR MaLR 32 124 -443 498 328 17 0 chr13 39646445 39646622 -62226547 + L1MD3 LINE L1 7404 7583 -412 840 265 65 18 chr13 39646630 39646966 -62226203 + L1MD3 LINE L1 7643 7994 -1 222 200 0 0 chr13 39646969 39647004 -62226165 - MIR SINE MIR -18 244 210 200 308 215 0 chr13 39646970 39647035 -62226134 - L2 LINE L2 -25 3247 3169 * 22 35 0 0 chr13 39647074 39647103 -62226066 + AT_rich Low_complexity Low_complexity 1 29 0 2189 102 10 0 chr13 39647248 39647551 -62225618 - AluSp SINE Alu -7 306 1 363 303 97 26 chr13 39649867 39650062 -62223107 + L3 LINE CR1 1072 1280 -297 264 328 135 13 chr13 39650076 39650305 -62222864 - L2 LINE L2 -3 3310 3054 26 30 0 0 chr13 39650452 39650485 -62222684 + AT_rich Low_complexity Low_complexity 1 33 0 1819 193 71 53 chr13 39650683 39651134 -62222035 - L1MD2 LINE L1 -457 5902 5444 6340 138 22 20 chr13 39651160 39652754 -62220415 - L1MA1 LINE L1 -2 6300 4706 4988 229 30 8 chr13 39652758 39653872 -62219297 - L1M1 LINE L1 -6418 1147 10 4473 21 0 0 chr13 39654178 39654701 -62218468 - L1PA3 LINE L1 -1610 4536 4014 7470 28 2 9 chr13 39654701 39656299 -62216870 + L1PA3 LINE L1 4559 6152 -3 228 200 0 0 chr13 39656830 39656880 -62216289 + (CA)n Simple_repeat Simple_repeat 1 50 0 4845 155 94 6 chr13 39657125 39658192 -62214977 - L1MA4A LINE L1 -7 6998 5854 25 0 0 0 chr13 39658192 39658217 -62214952 + AT_rich Low_complexity Low_complexity 1 25 0 754 220 6 6 chr13 39658219 39658387 -62214782 - L1PA15 LINE L1 0 6165 5998 1937 234 86 2 chr13 39658387 39658887 -62214282 - L1P LINE L1 -1537 4609 4068 21455 62 4 2 chr13 39658887 39662512 -62210657 - L1PA6 LINE L1 0 6154 2527 45 55 0 0 chr13 39662512 39662585 -62210584 + AT_rich Low_complexity Low_complexity 1 73 0 16380 115 9 14 chr13 39662608 39665113 -62208056 - L1PA6 LINE L1 -3644 2502 11 3714 215 37 34 chr13 39665119 39666141 -62207028 - L1P LINE L1 -2060 4086 3062 * 10963 229 19 13 chr13 39666130 39669036 -62204133 - L1MA4A LINE L1 -970 5878 2954 9453 219 119 31 chr13 39669046 39671359 -62201810 - L1MA4A LINE L1 -4040 2809 260 2224 79 0 0 chr13 39671359 39671659 -62201510 - AluSc SINE Alu 0 300 1 9453 219 119 31 chr13 39671659 39671829 -62201340 - L1MA4A LINE L1 -6589 260 106 23 78 0 0 chr13 39672549 39672600 -62200569 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr13 39672636 39672663 -62200506 + (CA)n Simple_repeat Simple_repeat 2 28 0 222 333 159 26 chr13 39673574 39673769 -62199400 + MIR SINE MIR 39 259 -3 183 80 0 0 chr13 39673822 39673847 -62199322 + (CATATA)n Simple_repeat Simple_repeat 2 26 0 1991 136 10 0 chr13 39674718 39675019 -62198150 - AluSx SINE Alu -8 304 1 22 0 0 0 chr13 39675697 39675719 -62197450 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 39675865 39675893 -62197276 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr13 39676724 39676757 -62196412 + AT_rich Low_complexity Low_complexity 1 33 0 25 83 0 0 chr13 39676840 39676900 -62196269 + AT_rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr13 39676960 39676985 -62196184 + AT_rich Low_complexity Low_complexity 1 25 0 2345 83 3 0 chr13 39677026 39677326 -62195843 - AluY SINE Alu -10 301 1 344 330 103 39 chr13 39677449 39677779 -62195390 - MLT1H LTR MaLR -114 435 85 267 320 20 26 chr13 39678197 39678350 -62194819 + L1MC/D LINE L1 5588 5739 -2069 2004 137 0 27 chr13 39678643 39678942 -62194227 + AluSx SINE Alu 1 291 -21 28 29 0 0 chr13 39679989 39680024 -62193145 + AT_rich Low_complexity Low_complexity 1 35 0 7812 17 0 0 chr13 39681221 39682617 -62190552 + L1PA2 LINE L1 4762 6154 -1 24 53 0 0 chr13 39683280 39683318 -62189851 + AT_rich Low_complexity Low_complexity 1 38 0 570 162 17 8 chr13 39683438 39683555 -62189614 + L1MA9 LINE L1 6189 6306 -6 5645 137 71 100 chr13 39683621 39685917 -62187252 + L1PA13 LINE L1 3926 6143 -20 30 0 0 0 chr13 39686041 39686071 -62187098 + AT_rich Low_complexity Low_complexity 1 30 0 839 248 31 0 chr13 39687554 39687780 -62185389 - L1MC/D LINE L1 -2241 5801 5569 474 277 33 37 chr13 39687861 39688161 -62185008 - L1MC/D LINE L1 -1081 5065 4767 27 29 0 0 chr13 39688312 39688346 -62184823 + AT_rich Low_complexity Low_complexity 1 34 0 588 282 54 68 chr13 39688373 39688893 -62184276 + MLT1F1 LTR MaLR 55 567 0 26 30 0 0 chr13 39689887 39689920 -62183249 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr13 39690337 39690388 -62182781 + AT_rich Low_complexity Low_complexity 1 51 0 40 53 0 32 chr13 39691552 39691646 -62181523 + AT_rich Low_complexity Low_complexity 1 91 0 24 0 0 0 chr13 39692525 39692549 -62180620 + AT_rich Low_complexity Low_complexity 1 24 0 349 276 80 51 chr13 39692781 39693092 -62180077 - L1ME LINE L1 -5189 881 562 2082 204 41 5 chr13 39693093 39693534 -62179635 - LTR32 LTR ERVL 0 471 15 347 260 88 21 chr13 39693883 39694058 -62179111 - L1ME LINE L1 -5835 235 52 340 319 35 21 chr13 39694108 39694249 -62178920 + L1M4 LINE L1 1566 1708 -4834 23 0 0 0 chr13 39694339 39694362 -62178807 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 39694715 39694738 -62178431 + (A)n Simple_repeat Simple_repeat 1 23 0 969 104 0 7 chr13 39695300 39695444 -62177725 - L1PA8 LINE L1 -2 6170 6028 417 344 118 15 chr13 39695470 39695906 -62177263 + L1MC4 LINE L1 6448 7029 -864 2248 105 7 0 chr13 39695913 39696217 -62176952 - AluY SINE Alu -5 306 1 413 320 0 0 chr13 39696514 39696614 -62176555 - MLT1G1 LTR MaLR -475 120 21 258 242 0 16 chr13 39696940 39697002 -62176167 - MER21B-int LTR ERV1 -2571 1620 1560 6964 246 64 22 chr13 39697005 39700803 -62172366 + L1MA5 LINE L1 1197 5248 -1600 333 68 0 0 chr13 39700803 39700847 -62172322 + (CA)n Simple_repeat Simple_repeat 1 44 0 6964 246 64 22 chr13 39700847 39701421 -62171748 + L1MA5 LINE L1 5248 5796 -1052 1960 163 20 20 chr13 39701416 39701773 -62171396 + L1MA5 LINE L1 6268 6624 -378 * 3624 240 9 1 chr13 39701784 39702527 -62170642 - MER21B-int LTR ERV1 -3442 749 1 801 235 142 4 chr13 39702554 39702822 -62170347 - MER21B LTR ERV1 -50 813 509 29 0 0 0 chr13 39703245 39703274 -62169895 + AT_rich Low_complexity Low_complexity 1 29 0 188 338 15 0 chr13 39703511 39703579 -62169590 + L2 LINE L2 2992 3060 -212 516 72 0 0 chr13 39703711 39703780 -62169389 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 2172 131 0 0 chr13 39703802 39704107 -62169062 - AluSc SINE Alu -4 305 1 484 286 8 0 chr13 39704121 39704247 -62168922 + AluJb SINE Alu 170 296 -16 1769 118 4 11 chr13 39704254 39704516 -62168653 + AluY SINE Alu 41 300 -11 24 77 0 0 chr13 39704526 39704578 -62168591 + AT_rich Low_complexity Low_complexity 1 52 0 829 332 58 40 chr13 39705569 39706376 -62166793 + L2 LINE L2 2480 3299 -14 540 359 81 13 chr13 39706684 39707068 -62166101 - L2 LINE L2 -374 2940 2531 237 369 33 8 chr13 39707161 39707283 -62165886 + MIR SINE MIR 52 176 -86 2127 142 14 22 chr13 39708013 39708380 -62164789 + THE1B LTR MaLR 1 364 0 641 320 104 34 chr13 39708420 39709182 -62163987 + L1ME LINE L1 136 1012 -5203 2326 81 7 3 chr13 39709182 39709492 -62163677 + AluY SINE Alu 1 311 0 641 320 104 34 chr13 39709492 39710067 -62163102 + L1ME LINE L1 1012 1546 -4669 252 255 66 32 chr13 39710227 39710383 -62162786 + L1ME LINE L1 2241 2383 -3832 1314 281 36 13 chr13 39710389 39710856 -62162313 + L1ME1 LINE L1 5645 6122 -44 24 77 0 0 chr13 39710903 39710955 -62162214 + AT_rich Low_complexity Low_complexity 1 52 0 369 58 0 0 chr13 39712046 39712098 -62161071 + (CA)n Simple_repeat Simple_repeat 2 53 0 25 51 0 0 chr13 39712177 39712216 -62160953 + AT_rich Low_complexity Low_complexity 1 39 0 265 288 106 47 chr13 39712679 39712849 -62160320 - L2 LINE L2 0 3313 3134 248 213 0 0 chr13 39712994 39713041 -62160128 + MER76 LTR ERV 621 667 -21 1647 242 47 91 chr13 39713048 39713684 -62159485 - MER76 LTR ERV -59 629 22 1397 219 53 3 chr13 39713692 39714011 -62159158 + MER54A LTR ERVL 567 901 0 266 139 0 0 chr13 39714459 39714502 -62158667 - MADE1 DNA Mariner -37 43 1 1874 166 0 3 chr13 39714994 39715295 -62157874 - AluSx SINE Alu -12 300 1 22 80 0 0 chr13 39715552 39715602 -62157567 + AT_rich Low_complexity Low_complexity 1 50 0 15909 32 2 1 chr13 39715602 39718282 -62154887 - L1PA3 LINE L1 -3 6152 3460 1111 216 32 65 chr13 39718751 39719061 -62154108 + MLT1A1 LTR MaLR 1 300 -65 1075 194 10 1 chr13 39719076 39719462 -62153707 + MER65A LTR ERV1 1 445 0 382 340 79 59 chr13 39720020 39720356 -62152813 + L1ME3A LINE L1 597 952 -5167 1761 181 121 5 chr13 39720356 39720743 -62152426 - MSTB1 LTR MaLR 0 432 1 382 340 79 59 chr13 39720743 39721012 -62152157 + L1ME3A LINE L1 952 1214 -4905 231 232 98 12 chr13 39721609 39721691 -62151478 + L1ME3A LINE L1 4060 4148 -1981 251 242 0 0 chr13 39721932 39721994 -62151175 + L1ME3A LINE L1 5398 5459 -688 192 40 0 0 chr13 39721994 39722019 -62151150 + (CA)n Simple_repeat Simple_repeat 2 26 0 1080 283 70 34 chr13 39722041 39722542 -62150627 + L1ME3A LINE L1 5566 6084 -69 369 335 49 31 chr13 39722576 39722925 -62150244 - HAL1 LINE L1 -581 1926 1572 306 320 108 29 chr13 39723087 39723393 -62149776 - HAL1 LINE L1 -1078 1429 1100 1532 189 26 3 chr13 39723517 39723862 -62149307 - MSTB2 LTR MaLR 0 457 15 351 0 0 0 chr13 39723910 39723949 -62149220 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2189 113 3 0 chr13 39724221 39724522 -62148647 - AluSq SINE Alu -11 302 1 506 309 58 61 chr13 39725393 39725739 -62147430 + MLT1J LTR MaLR 131 475 -36 22 35 0 0 chr13 39726898 39726927 -62146242 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 70 51 chr13 39727247 39727403 -62145766 + L2 LINE L2 3155 3313 0 418 191 143 27 chr13 39727430 39727577 -62145592 + L1MD3 LINE L1 7779 7942 -53 957 83 23 0 chr13 39727584 39727716 -62145453 - AluSc SINE Alu -9 300 166 22 0 0 0 chr13 39727725 39727747 -62145422 + AT_rich Low_complexity Low_complexity 1 22 0 1131 258 132 18 chr13 39727782 39728337 -62144832 + L1ME4a LINE L1 4648 5265 -881 813 261 51 9 chr13 39728338 39728553 -62144616 - MER58A DNA MER1_type 0 224 1 355 270 10 10 chr13 39728559 39728659 -62144510 + L1ME4a LINE L1 5268 5367 -2675 250 337 39 62 chr13 39729523 39729701 -62143468 - MIR SINE MIR -81 181 8 282 238 0 0 chr13 39729720 39729783 -62143386 + MLT1F1 LTR MaLR 1 63 -504 1249 226 160 6 chr13 39729859 39730178 -62142991 + MLT1F1 LTR MaLR 198 565 -2 414 0 0 0 chr13 39730335 39730381 -62142788 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr13 39730712 39730741 -62142428 + AT_rich Low_complexity Low_complexity 1 29 0 356 282 115 48 chr13 39730758 39731010 -62142159 + L1ME4a LINE L1 5715 5983 -138 30 0 0 0 chr13 39731493 39731523 -62141646 + AT_rich Low_complexity Low_complexity 1 30 0 2178 52 73 3 chr13 39731687 39731973 -62141196 - AluY SINE Alu -5 306 1 685 245 88 110 chr13 39732029 39732720 -62140449 + L1MC5 LINE L1 6627 7302 -659 349 272 6 12 chr13 39732732 39732905 -62140264 + (TA)n Simple_repeat Simple_repeat 2 173 0 310 247 12 0 chr13 39732905 39732990 -62140179 + L1MC5 LINE L1 7315 7400 -561 869 186 6 6 chr13 39733886 39734047 -62139122 - MSTC LTR MaLR -1 427 267 313 290 20 0 chr13 39734083 39734183 -62138986 - U13 snRNA snRNA -2 102 1 1887 145 37 0 chr13 39734570 39734867 -62138302 - AluSx SINE Alu -4 308 1 399 272 52 88 chr13 39734924 39735196 -62137973 - L1 LINE L1 -2193 3953 3692 679 194 29 0 chr13 39735691 39735830 -62137339 - BC200 scRNA scRNA -57 143 1 258 353 65 48 chr13 39735911 39736017 -62137152 + L2 LINE L2 450 553 -2761 2883 81 59 7 chr13 39736017 39736400 -62136769 + MLT2A1 LTR ERVL 1 409 -35 592 13 26 0 chr13 39736400 39736477 -62136692 + (TAGA)n Simple_repeat Simple_repeat 4 82 0 2883 81 59 7 chr13 39736477 39736515 -62136654 + MLT2A1 LTR ERVL 409 444 0 258 353 65 48 chr13 39736515 39736700 -62136469 + L2 LINE L2 553 746 -2568 2034 107 0 0 chr13 39737319 39737600 -62135569 + AluSc SINE Alu 22 302 -7 188 369 71 24 chr13 39737968 39738136 -62135033 + L2 LINE L2 1860 2035 -1279 28 91 0 0 chr13 39738148 39738225 -62134944 + AT_rich Low_complexity Low_complexity 1 77 0 279 0 0 0 chr13 39738288 39738319 -62134850 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr13 39739219 39739248 -62133921 + AT_rich Low_complexity Low_complexity 1 29 0 206 222 22 0 chr13 39739253 39739298 -62133871 + CT-rich Low_complexity Low_complexity 3 48 0 204 350 75 0 chr13 39739298 39739378 -62133791 - MIR SINE MIR -105 157 72 431 67 84 0 chr13 39739414 39739533 -62133636 + (TA)n Simple_repeat Simple_repeat 2 130 0 23 33 0 0 chr13 39739577 39739607 -62133562 + AT_rich Low_complexity Low_complexity 1 30 0 327 179 0 0 chr13 39739607 39739674 -62133495 + (CA)n Simple_repeat Simple_repeat 2 68 0 234 188 0 0 chr13 39739751 39739799 -62133370 + (TA)n Simple_repeat Simple_repeat 2 49 0 268 255 191 11 chr13 39740673 39740767 -62132402 - MIR SINE MIR -26 236 126 22 35 0 0 chr13 39741411 39741440 -62131729 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr13 39742184 39742237 -62130932 + AT_rich Low_complexity Low_complexity 1 53 0 31 26 0 0 chr13 39744290 39744328 -62128841 + AT_rich Low_complexity Low_complexity 1 38 0 594 286 91 5 chr13 39744424 39744644 -62128525 + MIR SINE MIR 19 257 -5 23 33 0 0 chr13 39744922 39744952 -62128217 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr13 39745495 39745518 -62127651 + AT_rich Low_complexity Low_complexity 1 23 0 1978 109 0 27 chr13 39745628 39745922 -62127247 + AluSx SINE Alu 1 286 -26 2115 112 3 3 chr13 39746052 39746347 -62126822 + AluSg SINE Alu 5 299 -11 303 279 99 9 chr13 39746635 39746746 -62126423 + L2 LINE L2 3193 3313 0 2080 197 36 2 chr13 39746864 39747276 -62125893 - MSTB LTR MaLR 0 426 1 3103 174 48 0 chr13 39747543 39748153 -62125016 + L1PB4 LINE L1 5516 6154 -2 1267 172 19 4 chr13 39748165 39748426 -62124743 + L1 LINE L1 5042 5306 -840 210 296 160 48 chr13 39748937 39749062 -62124107 + L2 LINE L2 3175 3313 0 1450 204 24 31 chr13 39749773 39750155 -62123014 - L1 LINE L1 -2500 3646 3268 23 0 0 0 chr13 39750631 39750654 -62122515 + AT_rich Low_complexity Low_complexity 1 23 0 327 49 0 0 chr13 39752339 39752380 -62120789 + (CA)n Simple_repeat Simple_repeat 2 42 0 801 288 62 60 chr13 39752911 39753345 -62119824 + L1MC4 LINE L1 6496 6930 -1112 324 83 0 0 chr13 39753383 39753431 -62119738 + (TG)n Simple_repeat Simple_repeat 1 48 0 596 132 0 0 chr13 39753476 39753582 -62119587 - LOR1-int LTR ERV1 -3846 4274 4169 1463 205 10 106 chr13 39753582 39753927 -62119242 + L1 LINE L1 3994 4278 -1868 3260 89 13 4 chr13 39753927 39754388 -62118781 - L1PA11 LINE L1 0 6174 5710 1463 205 10 106 chr13 39754388 39754540 -62118629 + L1 LINE L1 4278 4443 -1703 1579 194 25 16 chr13 39754544 39754863 -62118306 - MSTB LTR MaLR -103 323 2 1630 156 52 3 chr13 39754863 39755209 -62117960 + L1MA8 LINE L1 5923 6285 -6 28 29 0 0 chr13 39755209 39755244 -62117925 + AT_rich Low_complexity Low_complexity 1 35 0 4734 157 19 47 chr13 39755314 39755444 -62117725 + L1PA16 LINE L1 5059 5191 -975 387 0 0 0 chr13 39755444 39755487 -62117682 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 4734 157 19 47 chr13 39755487 39755736 -62117433 + L1PA16 LINE L1 5191 5446 -720 1954 88 11 0 chr13 39755736 39755996 -62117173 + AluSq SINE Alu 44 306 -7 4734 157 19 47 chr13 39755996 39756759 -62116410 + L1PA16 LINE L1 5446 6166 0 504 320 68 31 chr13 39756907 39757363 -62115806 + L1ME3A LINE L1 4927 5399 -747 249 229 14 43 chr13 39757468 39757538 -62115631 + L1ME3A LINE L1 5461 5528 -638 24 77 0 0 chr13 39757546 39757598 -62115571 + AT_rich Low_complexity Low_complexity 1 52 0 789 271 89 30 chr13 39757668 39758107 -62115062 + L1ME3A LINE L1 5602 6066 -104 23 86 0 0 chr13 39758479 39758537 -62114632 + AT_rich Low_complexity Low_complexity 1 58 0 233 200 31 31 chr13 39758801 39758866 -62114303 + MER92B LTR ERV1 254 318 -318 231 36 0 0 chr13 39759649 39759677 -62113492 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 186 118 0 0 chr13 39759769 39759803 -62113366 + (TA)n Simple_repeat Simple_repeat 2 35 0 1791 127 0 0 chr13 39759803 39760062 -62113107 - AluSq SINE Alu -18 295 37 21 0 0 0 chr13 39760329 39760350 -62112819 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 39760485 39760512 -62112657 + AT_rich Low_complexity Low_complexity 1 27 0 1070 309 28 40 chr13 39760975 39761477 -62111692 + L1ME1 LINE L1 5649 6144 -22 404 256 36 54 chr13 39761528 39761696 -62111473 + L1MC4 LINE L1 6922 7086 -956 1507 255 82 18 chr13 39761710 39762310 -62110859 + L1MC4 LINE L1 7259 7896 -146 265 242 96 51 chr13 39762372 39762550 -62110619 + HsTC2 DNA Tc2 1712 1897 -1 23 33 0 0 chr13 39764445 39764475 -62108694 + AT_rich Low_complexity Low_complexity 1 30 0 353 318 159 0 chr13 39765292 39765418 -62107751 - L2 LINE L2 -6 3266 3121 745 262 43 0 chr13 39766840 39767027 -62106142 + MER58A DNA MER1_type 30 224 0 32 67 0 0 chr13 39767128 39767188 -62105981 + AT_rich Low_complexity Low_complexity 1 60 0 1611 201 61 18 chr13 39767382 39767774 -62105395 + L1MA8 LINE L1 5877 6285 -6 233 132 75 0 chr13 39767805 39767858 -62105311 + Charlie5 DNA MER1_type 2425 2481 -131 268 374 38 0 chr13 39767982 39768113 -62105056 + L2 LINE L2 2948 3083 -189 31 42 0 42 chr13 39768315 39768386 -62104783 + AT_rich Low_complexity Low_complexity 1 68 0 211 339 54 9 chr13 39768796 39768908 -62104261 + L2 LINE L2 3196 3312 -1 2075 138 132 5 chr13 39769052 39769430 -62103739 + MSTA LTR MaLR 1 426 -2 7877 156 64 14 chr13 39769434 39770937 -62102232 + MSTA-int LTR MaLR 3 1580 0 623 178 9 0 chr13 39770937 39771044 -62102125 + MSTA LTR MaLR 1 108 -320 208 324 15 15 chr13 39771759 39771827 -62101342 + L2 LINE L2 3192 3259 -54 2102 115 0 3 chr13 39772525 39772820 -62100349 - AluSq SINE Alu -8 305 12 201 234 21 0 chr13 39773101 39773148 -62100021 + (TCTCTG)n Simple_repeat Simple_repeat 2 49 0 1071 199 0 5 chr13 39773158 39773374 -62099795 - L1PA15 LINE L1 -1 6164 5950 4854 271 42 26 chr13 39773393 39773520 -62099649 - L1PA13 LINE L1 -2763 4034 3911 1918 155 23 3 chr13 39773520 39773823 -62099346 - AluSx SINE Alu -1 311 3 4854 271 42 26 chr13 39773823 39776363 -62096806 - L1PA13 LINE L1 -2886 3911 1323 1959 329 31 42 chr13 39776340 39777184 -62095985 - L1PA13 LINE L1 -5952 835 1 * 965 275 96 33 chr13 39778905 39779334 -62093835 + LTR40a LTR ERVL 15 470 -49 463 233 0 50 chr13 39780275 39780395 -62092774 - L1M4c LINE L1 -6251 133 20 895 124 16 32 chr13 39781806 39781992 -62091177 + L1MA7 LINE L1 6108 6290 -1 2013 143 0 3 chr13 39783214 39783514 -62089655 + AluSx SINE Alu 1 299 -13 228 67 0 0 chr13 39784302 39784332 -62088837 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1795 191 123 5 chr13 39784496 39784879 -62088290 - MSTA LTR MaLR 0 428 1 8517 181 25 5 chr13 39784879 39786497 -62086672 - MSTA-int LTR MaLR 0 1651 1 1898 159 148 3 chr13 39786497 39786869 -62086300 - MSTA LTR MaLR 0 428 3 676 223 103 0 chr13 39786970 39787154 -62086015 - L1MA9 LINE L1 -1 6311 6109 9607 147 36 13 chr13 39787154 39788853 -62084316 - Tigger3(Golem) DNA MER2_type -1 3028 1291 1865 179 15 3 chr13 39788957 39789287 -62083882 - L1PA15 LINE L1 -31 6134 5801 354 242 0 0 chr13 39789287 39789353 -62083816 - Tigger3(Golem) DNA MER2_type -2963 66 1 695 172 67 28 chr13 39789353 39789533 -62083636 - L1MA9 LINE L1 -201 6111 5925 1810 184 47 35 chr13 39789535 39790080 -62083089 + MLT2A2 LTR ERVL 3 554 0 1034 193 4 34 chr13 39790080 39790319 -62082850 - L1MA9 LINE L1 -383 5929 5698 369 193 5 13 chr13 39790319 39790392 -62082777 + LTR9 LTR ERV1 554 612 0 232 333 38 8 chr13 39790394 39790526 -62082643 - L1ME LINE L1 -611 5553 5418 22 0 0 0 chr13 39790925 39790947 -62082222 + AT_rich Low_complexity Low_complexity 1 22 0 2092 117 3 10 chr13 39791758 39792058 -62081111 + AluSp SINE Alu 1 298 -15 21 0 0 0 chr13 39792356 39792377 -62080792 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 39792657 39792685 -62080484 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 39793316 39793339 -62079830 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 39793561 39793585 -62079584 + AT_rich Low_complexity Low_complexity 1 24 0 1821 201 64 48 chr13 39794743 39795162 -62078007 - MSTB LTR MaLR 0 426 1 23 68 0 0 chr13 39796304 39796348 -62076821 + AT_rich Low_complexity Low_complexity 1 44 0 190 408 115 27 chr13 39796560 39796820 -62076349 + L2 LINE L2 2987 3269 -3 22 35 0 0 chr13 39796892 39796921 -62076248 + AT_rich Low_complexity Low_complexity 1 29 0 529 179 9 9 chr13 39797267 39797379 -62075790 - L1MA10 LINE L1 -2 6332 6221 505 146 12 0 chr13 39797656 39797738 -62075431 + THE1B LTR MaLR 1 83 -345 765 138 17 0 chr13 39797740 39797856 -62075313 + THE1B LTR MaLR 247 364 0 1335 150 0 0 chr13 39797856 39798076 -62075093 + MSTA-int LTR MaLR 1 220 -1360 5624 171 11 13 chr13 39798117 39799100 -62074069 + MSTA-int LTR MaLR 600 1580 0 1807 151 121 48 chr13 39799100 39799473 -62073696 + MSTA LTR MaLR 1 345 -83 1713 149 92 49 chr13 39799473 39799822 -62073347 - THE1B LTR MaLR 0 364 1 10604 113 20 8 chr13 39799822 39801383 -62071786 - THE1B-int LTR MaLR 0 1580 1 1966 134 77 37 chr13 39801383 39801733 -62071436 - THE1B LTR MaLR 0 364 1 1807 151 121 48 chr13 39801733 39801754 -62071415 + MSTA LTR MaLR 344 426 -2 1229 233 96 28 chr13 39801760 39802140 -62071029 + MLT2B1 LTR ERVL 41 442 -78 24 0 0 0 chr13 39802158 39802182 -62070987 + AT_rich Low_complexity Low_complexity 1 24 0 40 79 0 0 chr13 39802229 39802318 -62070851 + AT_rich Low_complexity Low_complexity 1 89 0 21 0 0 0 chr13 39803219 39803240 -62069929 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr13 39803357 39803390 -62069779 + (TA)n Simple_repeat Simple_repeat 1 33 0 2104 152 43 0 chr13 39803957 39804306 -62068863 + THE1B LTR MaLR 1 364 0 26 82 0 0 chr13 39807768 39807829 -62065340 + AT_rich Low_complexity Low_complexity 1 61 0 231 170 0 0 chr13 39808149 39808196 -62064973 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr13 39808263 39808291 -62064878 + AT_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr13 39809120 39809153 -62064016 + (TG)n Simple_repeat Simple_repeat 2 34 0 2255 171 130 19 chr13 39809212 39809743 -62063426 - LTR10E LTR ERV1 -43 590 1 27 49 0 0 chr13 39809905 39809946 -62063223 + AT_rich Low_complexity Low_complexity 1 41 0 1187 294 43 31 chr13 39810681 39811168 -62062001 + L1MD2 LINE L1 5508 6000 -359 2285 101 30 3 chr13 39811349 39811686 -62061483 - L1PA13 LINE L1 -11 6152 5807 3514 130 15 4 chr13 39811686 39812310 -62060859 + L1PA13 LINE L1 5176 5804 -364 1396 236 81 58 chr13 39812612 39813108 -62060061 - MER67D LTR ERV1 -1 513 7 261 0 0 0 chr13 39813879 39813908 -62059261 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2293 84 3 0 chr13 39814472 39814769 -62058400 - AluSp SINE Alu -15 298 1 1539 144 39 122 chr13 39814793 39815202 -62057967 + THE1C LTR MaLR 1 375 0 1363 182 40 4 chr13 39816017 39816270 -62056899 - Tigger5 DNA MER2_type -8 2315 2054 3163 134 35 14 chr13 39816270 39816762 -62056407 - MER1A DNA MER1_type 0 529 28 6664 233 76 42 chr13 39816804 39818781 -62054388 - Tigger5 DNA MER2_type -261 2062 20 9372 41 1 0 chr13 39820077 39821994 -62051175 - L1PA5 LINE L1 -3 6151 4233 26 30 0 0 chr13 39822395 39822428 -62050741 + AT_rich Low_complexity Low_complexity 1 33 0 489 34 0 0 chr13 39823639 39823698 -62049471 + (GAAA)n Simple_repeat Simple_repeat 4 62 0 9048 194 28 2 chr13 39824037 39826462 -62046707 + L1PB1 LINE L1 3309 5788 -363 235 236 11 11 chr13 39826479 39826568 -62046601 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 409 210 0 0 chr13 39826571 39826652 -62046517 + L1 LINE L1 4511 4591 -1555 198 0 0 0 chr13 39826675 39826697 -62046472 + (TA)n Simple_repeat Simple_repeat 2 23 0 2391 120 6 0 chr13 39826697 39827054 -62046115 + L1PB1 LINE L1 5793 6151 0 22 0 0 0 chr13 39827110 39827132 -62046037 + AT_rich Low_complexity Low_complexity 1 22 0 3622 155 33 14 chr13 39827136 39827799 -62045370 - L1PB3 LINE L1 -3 6867 6192 230 0 33 0 chr13 39827823 39827853 -62045316 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1743 75 0 0 chr13 39827853 39828080 -62045089 - L1PA7 LINE L1 -13 6141 5915 12647 213 35 24 chr13 39828081 39832311 -62040858 - L1PB3 LINE L1 -671 6196 1919 1879 139 0 38 chr13 39832370 39832687 -62040482 + AluSx SINE Alu 1 305 -7 229 333 129 0 chr13 39832940 39833072 -62040097 - MIR SINE MIR -49 213 65 5890 242 32 26 chr13 39833142 39835993 -62037176 - L1PB3 LINE L1 -4937 1926 3 427 92 0 15 chr13 39836098 39836163 -62037006 + L1PA10 LINE L1 6100 6163 -5 4106 116 20 2 chr13 39836184 39836790 -62036379 + L1PA11 LINE L1 5558 6174 0 2843 223 67 12 chr13 39837686 39837863 -62035306 - L1MB7 LINE L1 -16 6168 6002 2132 161 20 54 chr13 39837863 39838310 -62034859 + MSTB1 LTR MaLR 1 432 0 2843 223 67 12 chr13 39838310 39838896 -62034273 - L1MB7 LINE L1 -182 6002 5363 3433 250 96 73 chr13 39838897 39841020 -62032149 - L1MB7 LINE L1 -1356 4790 2620 1419 95 0 62 chr13 39841022 39841257 -62031912 - AluSq SINE Alu 0 306 85 1419 281 54 47 chr13 39841330 39841616 -62031553 - L1M4c LINE L1 -4585 2059 1777 2308 66 0 3 chr13 39841616 39841903 -62031266 - AluY SINE Alu -17 294 9 1419 281 54 47 chr13 39841903 39842687 -62030482 - L1M4c LINE L1 -4867 1777 923 2228 249 17 2 chr13 39842687 39843165 -62030004 + Tigger7 DNA MER2_type 1 485 -248 438 211 0 0 chr13 39843171 39843247 -62029922 + Tigger7 DNA MER2_type 2497 2572 -15 2630 258 42 63 chr13 39843252 39844177 -62028992 - L1M4c LINE L1 -5636 906 1 231 36 0 0 chr13 39844358 39844386 -62028783 + (CA)n Simple_repeat Simple_repeat 1 28 0 21 104 0 0 chr13 39844717 39844794 -62028375 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr13 39844964 39844995 -62028174 + AT_rich Low_complexity Low_complexity 1 31 0 252 368 59 13 chr13 39845583 39845822 -62027347 - L1MC/D LINE L1 -1981 5827 5578 537 341 127 28 chr13 39846149 39846685 -62026484 - HAL1 LINE L1 -850 1657 1069 222 121 35 17 chr13 39846873 39846931 -62026238 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr13 39848302 39848330 -62024839 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr13 39848407 39848450 -62024719 + AT_rich Low_complexity Low_complexity 1 43 0 6297 189 29 11 chr13 39849682 39851851 -62021318 - L1PA15 LINE L1 -18 6147 3943 2179 202 76 18 chr13 39852200 39852711 -62020458 + L1MD1 LINE L1 5702 6242 0 4509 223 26 21 chr13 39852979 39853073 -62020096 + L1MB1 LINE L1 4161 4253 -1915 189 0 0 0 chr13 39853073 39853094 -62020075 + (CA)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 39853094 39854297 -62018872 + L1MB1 LINE L1 4253 5466 -702 1168 246 71 9 chr13 39854301 39854470 -62018699 + MLT1A2 LTR MaLR 1 158 -216 342 0 0 0 chr13 39854470 39854508 -62018661 + (TC)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 39854508 39854663 -62018506 + MLT1A2 LTR MaLR 158 345 -29 1003 195 37 45 chr13 39854675 39854921 -62018248 + L1MB1 LINE L1 5489 5732 -602 586 141 24 65 chr13 39854968 39855126 -62018043 + L1MB1 LINE L1 6021 6164 -7 2751 240 51 46 chr13 39855129 39856025 -62017144 + L1MD1 LINE L1 5328 6228 -14 253 302 10 52 chr13 39856705 39856801 -62016368 - MIR SINE MIR -98 110 19 1616 194 3 78 chr13 39857083 39857465 -62015704 - MLT1B LTR MaLR -35 355 3 33 56 0 0 chr13 39858819 39858873 -62014296 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr13 39858897 39858926 -62014243 + AT_rich Low_complexity Low_complexity 1 29 0 277 273 180 42 chr13 39859119 39859408 -62013761 + MER46C DNA MER2_type 2 330 -8 232 350 40 40 chr13 39860035 39860235 -62012934 + L2 LINE L2 3014 3213 -100 202 385 67 37 chr13 39860945 39861080 -62012089 + L2 LINE L2 3134 3272 0 216 0 0 0 chr13 39861727 39861751 -62011418 + (TA)n Simple_repeat Simple_repeat 1 24 0 28 0 0 0 chr13 39861902 39861930 -62011239 + AT_rich Low_complexity Low_complexity 1 28 0 5467 266 70 39 chr13 39862343 39862764 -62010405 - L1 LINE L1 -2010 5157 4750 315 0 0 0 chr13 39862764 39862799 -62010370 + (TG)n Simple_repeat Simple_repeat 1 35 0 5467 266 70 39 chr13 39862799 39865183 -62007986 - L1 LINE L1 -2417 4750 2463 2389 68 7 0 chr13 39865183 39865490 -62007679 - AluY SINE Alu -2 309 1 5467 266 70 39 chr13 39865490 39867159 -62006010 - L1 LINE L1 -4704 2463 847 316 298 177 14 chr13 39867302 39867443 -62005726 + MER5A DNA MER1_type 23 186 -3 309 383 78 0 chr13 39867620 39867800 -62005369 + L2 LINE L2 2377 2570 -744 2026 120 3 0 chr13 39868342 39868625 -62004544 + AluSx SINE Alu 1 284 -28 463 74 87 3 chr13 39868625 39868931 -62004238 + (TA)n Simple_repeat Simple_repeat 1 331 0 222 190 0 35 chr13 39869231 39869289 -62003880 + (TA)n Simple_repeat Simple_repeat 1 56 0 605 294 109 27 chr13 39870817 39871110 -62002059 - MLT1I LTR MaLR 0 409 93 385 275 81 34 chr13 39871964 39872113 -62001056 - MLT1H LTR MaLR -292 257 102 237 33 0 0 chr13 39872330 39872360 -62000809 + (TG)n Simple_repeat Simple_repeat 1 30 0 215 214 0 0 chr13 39872370 39872412 -62000757 + GA-rich Low_complexity Low_complexity 2 43 0 26 0 0 0 chr13 39873892 39873918 -61999251 + AT_rich Low_complexity Low_complexity 1 26 0 180 360 35 0 chr13 39874353 39874439 -61998730 + MIR SINE MIR 93 181 -81 324 70 0 0 chr13 39874440 39874483 -61998686 + (TA)n Simple_repeat Simple_repeat 1 43 0 254 228 18 0 chr13 39874483 39874540 -61998629 + L1MD1 LINE L1 5930 5987 -255 289 222 172 10 chr13 39874550 39874649 -61998520 + L1MD1 LINE L1 5930 6044 -198 26 64 0 0 chr13 39876069 39876116 -61997053 + AT_rich Low_complexity Low_complexity 1 47 0 213 94 0 0 chr13 39876282 39876314 -61996855 + (TAAAA)n Simple_repeat Simple_repeat 3 34 0 2595 182 29 11 chr13 39876335 39876936 -61996233 - L1MC/D LINE L1 -542 5791 5177 441 0 0 0 chr13 39876936 39876985 -61996184 + (TTA)n Simple_repeat Simple_repeat 3 51 0 6494 76 5 0 chr13 39876985 39878471 -61994698 - L1PA7 LINE L1 -18 6136 4648 3979 80 24 0 chr13 39878471 39879012 -61994157 + L1PA7 LINE L1 5428 5981 -173 * 22528 128 14 83 chr13 39879011 39883484 -61989685 - L1PA7 LINE L1 -1972 4174 12 2850 266 50 11 chr13 39883492 39884514 -61988655 - L1MC/D LINE L1 -958 5188 4127 1183 211 17 20 chr13 39884515 39884814 -61988355 - L1 LINE L1 -1492 4654 4357 210 291 0 0 chr13 39885044 39885099 -61988070 + CT-rich Low_complexity Low_complexity 1 55 0 1297 113 48 9 chr13 39885626 39885855 -61987314 - L1PA12 LINE L1 -4734 2847 2610 1822 160 3 0 chr13 39886194 39886487 -61986682 + AluSx SINE Alu 1 294 -18 482 327 0 46 chr13 39886565 39886782 -61986387 + LTR16A1 LTR ERVL 249 455 -2 386 325 16 55 chr13 39887324 39887579 -61985590 + HERV16 LTR ERVL 910 1154 -3842 606 235 8 0 chr13 39887844 39887976 -61985193 - AluJb SINE Alu -179 133 1 2202 147 136 13 chr13 39888085 39888548 -61984621 - L1MA4A LINE L1 -2 6301 5782 23 86 0 0 chr13 39888703 39888761 -61984408 + AT_rich Low_complexity Low_complexity 1 58 0 181 382 130 8 chr13 39890475 39890713 -61982456 + L2 LINE L2 1441 1707 -1607 234 0 0 0 chr13 39891941 39891967 -61981202 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1015 216 14 19 chr13 39892001 39892214 -61980955 - AluJo SINE Alu -94 218 7 39 50 0 0 chr13 39892278 39892338 -61980831 + AT_rich Low_complexity Low_complexity 1 60 0 289 222 172 10 chr13 39993749 39993848 -61879321 - L1MD1 LINE L1 -198 6044 5930 254 228 18 0 chr13 39993858 39993915 -61879254 - L1MD1 LINE L1 -255 5987 5930 324 70 0 0 chr13 39993915 39993958 -61879211 + (TA)n Simple_repeat Simple_repeat 2 44 0 180 360 35 0 chr13 39993959 39994045 -61879124 - MIR SINE MIR -81 181 93 26 0 0 0 chr13 39994480 39994506 -61878663 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr13 39995146 39995175 -61877994 + AT_rich Low_complexity Low_complexity 1 29 0 215 214 0 0 chr13 39995986 39996028 -61877141 + CT-rich Low_complexity Low_complexity 2 43 0 237 33 0 0 chr13 39996038 39996068 -61877101 + (CA)n Simple_repeat Simple_repeat 1 30 0 385 275 81 34 chr13 39996285 39996434 -61876735 + MLT1H LTR MaLR 102 257 -292 605 294 109 27 chr13 39997288 39997581 -61875588 + MLT1I LTR MaLR 93 409 0 222 190 0 35 chr13 39999109 39999167 -61874002 + (TA)n Simple_repeat Simple_repeat 1 56 0 35 24 0 0 chr13 39999463 39999505 -61873664 + AT_rich Low_complexity Low_complexity 1 42 0 510 62 94 0 chr13 39999505 39999665 -61873504 + (TA)n Simple_repeat Simple_repeat 1 175 0 39 0 0 0 chr13 39999665 39999704 -61873465 + AT_rich Low_complexity Low_complexity 1 39 0 462 89 70 6 chr13 39999704 39999861 -61873308 + (TA)n Simple_repeat Simple_repeat 1 167 0 2026 120 3 0 chr13 39999861 40000144 -61873025 - AluSx SINE Alu -28 284 1 309 383 78 0 chr13 40000686 40000866 -61872303 - L2 LINE L2 -744 2570 2377 316 298 177 14 chr13 40001043 40001184 -61871985 - MER5A DNA MER1_type -3 186 23 5491 265 67 34 chr13 40001327 40002996 -61870173 + L1M2a LINE L1 847 2460 -4707 2406 68 7 0 chr13 40002996 40003305 -61869864 + AluY SINE Alu 1 311 0 5491 265 67 34 chr13 40003305 40005684 -61867485 + L1M2a LINE L1 2460 4751 -2416 279 0 0 0 chr13 40005684 40005715 -61867454 + (CA)n Simple_repeat Simple_repeat 1 31 0 5491 265 67 34 chr13 40005715 40006136 -61867033 + L1M2a LINE L1 4751 5157 -2010 28 0 0 0 chr13 40006549 40006577 -61866592 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr13 40006728 40006758 -61866411 + (TA)n Simple_repeat Simple_repeat 1 30 0 202 385 67 37 chr13 40007405 40007540 -61865629 - L2 LINE L2 0 3272 3134 232 350 40 40 chr13 40008250 40008450 -61864719 - L2 LINE L2 -100 3213 3014 277 273 180 42 chr13 40009077 40009366 -61863803 - MER46C DNA MER2_type -8 330 2 22 35 0 0 chr13 40009559 40009588 -61863581 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr13 40009612 40009666 -61863503 + AT_rich Low_complexity Low_complexity 1 54 0 1616 194 3 78 chr13 40011020 40011402 -61861767 + MLT1B LTR MaLR 3 355 -35 253 302 10 52 chr13 40011684 40011780 -61861389 + MIR SINE MIR 19 110 -98 2751 240 51 46 chr13 40012460 40013356 -61859813 - L1MD1 LINE L1 -14 6228 5328 586 141 24 65 chr13 40013359 40013517 -61859652 - L1MB1 LINE L1 -7 6164 6021 1003 195 37 45 chr13 40013564 40013810 -61859359 - L1MB1 LINE L1 -602 5732 5489 1168 246 71 9 chr13 40013822 40013977 -61859192 - MLT1A2 LTR MaLR -29 345 201 342 0 0 0 chr13 40013977 40014015 -61859154 + (GA)n Simple_repeat Simple_repeat 2 39 0 1168 246 71 9 chr13 40014015 40014184 -61858985 - MLT1A2 LTR MaLR -173 201 1 4509 223 26 21 chr13 40014188 40015391 -61857778 - L1MB1 LINE L1 -702 5466 4253 189 0 0 0 chr13 40015391 40015412 -61857757 + (TG)n Simple_repeat Simple_repeat 2 22 0 4509 223 26 21 chr13 40015412 40015506 -61857663 - L1MB1 LINE L1 -1915 4253 4161 2179 202 76 18 chr13 40015774 40016285 -61856884 - L1MD1 LINE L1 0 6242 5702 6353 189 29 11 chr13 40016634 40018804 -61854365 + L1PA15 LINE L1 3943 6147 -18 29 47 0 0 chr13 40020036 40020079 -61853090 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 40020156 40020184 -61852985 + AT_rich Low_complexity Low_complexity 1 28 0 222 121 35 17 chr13 40021555 40021613 -61851556 + (TA)n Simple_repeat Simple_repeat 2 60 0 537 341 127 28 chr13 40021801 40022337 -61850832 + HAL1 LINE L1 1069 1657 -850 252 368 59 13 chr13 40022664 40022903 -61850266 + L1MC/D LINE L1 5578 5827 -1981 24 32 0 0 chr13 40023491 40023522 -61849647 + AT_rich Low_complexity Low_complexity 1 31 0 21 104 0 0 chr13 40023692 40023769 -61849400 + AT_rich Low_complexity Low_complexity 1 77 0 231 36 0 0 chr13 40024100 40024128 -61849041 + (TG)n Simple_repeat Simple_repeat 1 28 0 2636 259 42 62 chr13 40024309 40025233 -61847936 + L1MB7 LINE L1 1 906 -5636 438 211 0 0 chr13 40025238 40025314 -61847855 - Tigger7 DNA MER2_type -15 2472 2397 2228 249 17 2 chr13 40025320 40025798 -61847371 - Tigger7 DNA MER2_type -248 485 1 2010 255 68 52 chr13 40025798 40026538 -61846631 + L1MB7 LINE L1 923 1779 -4865 2319 63 0 3 chr13 40026538 40026825 -61846344 + AluY SINE Alu 9 294 -17 2010 255 68 52 chr13 40026825 40027111 -61846058 + L1MB7 LINE L1 1779 2059 -4585 1420 95 0 62 chr13 40027184 40027419 -61845750 + AluSq SINE Alu 85 306 0 3413 248 97 74 chr13 40027421 40029544 -61843625 + L1MB7 LINE L1 3118 5288 -1356 2843 223 67 12 chr13 40029545 40030131 -61843038 + L1MB7 LINE L1 5861 6500 -182 2132 161 20 54 chr13 40030131 40030578 -61842591 - MSTB1 LTR MaLR 0 432 1 2843 223 67 12 chr13 40030578 40030755 -61842414 + L1MB7 LINE L1 6500 6666 -16 4106 116 20 2 chr13 40031651 40032257 -61840912 - L1PA11 LINE L1 0 6174 5558 347 85 0 146 chr13 40032259 40032341 -61840828 - L1PA7 LINE L1 0 6154 6085 5890 240 31 25 chr13 40032448 40035299 -61837870 + L1PB2 LINE L1 3 1926 -4937 229 333 129 0 chr13 40035369 40035501 -61837668 + MIR SINE MIR 65 213 -49 1885 139 0 35 chr13 40035754 40036070 -61837099 - AluSx SINE Alu -7 305 1 12643 204 21 35 chr13 40036129 40040370 -61832799 + L1PB2 LINE L1 1919 6158 -709 1744 75 0 0 chr13 40040370 40040595 -61832574 + L1PA7 LINE L1 5915 6171 0 231 0 33 0 chr13 40040595 40040625 -61832544 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 12643 204 21 35 chr13 40040625 40041203 -61831966 + L1PB2 LINE L1 6158 6742 -125 3622 155 33 14 chr13 40040649 40041312 -61831857 + L1PB3 LINE L1 6192 6867 -3 22 0 0 0 chr13 40041316 40041338 -61831831 + AT_rich Low_complexity Low_complexity 1 22 0 2407 118 6 0 chr13 40041394 40041751 -61831418 - L1PB1 LINE L1 0 6151 5793 414 0 0 0 chr13 40041751 40041797 -61831372 + (TA)n Simple_repeat Simple_repeat 2 47 0 409 210 0 0 chr13 40041820 40041901 -61831268 - L1 LINE L1 -1555 4591 4511 309 307 20 0 chr13 40041901 40042002 -61831167 - L1MC4 LINE L1 -1336 6706 6604 9059 193 28 2 chr13 40042012 40044437 -61828732 - L1P5 LINE L1 -363 5788 3309 525 32 0 0 chr13 40044776 40044839 -61828330 + (TTTC)n Simple_repeat Simple_repeat 4 66 0 26 30 0 0 chr13 40046046 40046079 -61827090 + AT_rich Low_complexity Low_complexity 1 33 0 9372 41 1 0 chr13 40046480 40048397 -61824772 + L1PA5 LINE L1 4233 6151 -3 6664 233 76 42 chr13 40049693 40051670 -61821499 + Tigger5 DNA MER2_type 20 2062 -261 3170 132 35 16 chr13 40051712 40052205 -61820964 + MER1A DNA MER1_type 28 529 0 1363 182 40 4 chr13 40052205 40052458 -61820711 + Tigger5 DNA MER2_type 2054 2315 -8 32 0 0 0 chr13 40053590 40053622 -61819547 + AT_rich Low_complexity Low_complexity 1 32 0 195 232 0 0 chr13 40054334 40054416 -61818753 + (TA)n Simple_repeat Simple_repeat 2 83 0 1080 203 107 38 chr13 40054771 40055136 -61818033 + MLT1B LTR MaLR 1 390 0 1841 238 100 38 chr13 40055175 40055735 -61817434 + MER76 LTR ERV 94 688 0 180 0 0 0 chr13 40055918 40055938 -61817231 + (TA)n Simple_repeat Simple_repeat 1 20 0 291 28 0 0 chr13 40056372 40056408 -61816761 + (CA)n Simple_repeat Simple_repeat 1 36 0 1906 159 120 26 chr13 40056420 40056811 -61816358 - MSTA LTR MaLR 0 428 1 8386 190 39 2 chr13 40056811 40058404 -61814765 - MSTA-int LTR MaLR 0 1651 1 1966 136 23 3 chr13 40058450 40058752 -61814417 + AluSx SINE Alu 3 310 -2 3839 200 34 12 chr13 40058793 40060312 -61812857 + L1PB4 LINE L1 4588 6149 -7 22 0 0 0 chr13 40061148 40061170 -61811999 + AT_rich Low_complexity Low_complexity 1 22 0 572 282 52 36 chr13 40061885 40062194 -61810975 - Charlie8 DNA MER1_type -1997 420 107 196 365 17 52 chr13 40062432 40062547 -61810622 - MIR SINE MIR -131 131 21 242 28 0 28 chr13 40062838 40062874 -61810295 + (TA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr13 40062873 40062894 -61810275 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 24 53 0 0 chr13 40064282 40064320 -61808849 + AT_rich Low_complexity Low_complexity 1 38 0 2085 24 0 4 chr13 40064608 40064860 -61808309 - L1PA4 LINE L1 0 6155 5905 304 85 0 4 chr13 40064860 40064901 -61808268 - L1P3 LINE L1 -388 5766 5725 21 82 0 0 chr13 40065199 40065248 -61807921 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 40065403 40065425 -61807744 + AT_rich Low_complexity Low_complexity 1 22 0 257 167 42 0 chr13 40066620 40066668 -61806501 + ERVL-F LTR ERVL 3775 3824 -1940 498 207 62 98 chr13 40066751 40066944 -61806225 + ERVL-F LTR ERVL 5562 5747 -17 397 286 21 36 chr13 40066944 40067084 -61806085 + MLT2F LTR ERVL 2 139 -524 389 236 15 146 chr13 40067088 40067287 -61805882 + MLT1E1 LTR MaLR 61 233 -391 375 223 43 36 chr13 40067481 40067620 -61805549 + ERVL LTR ERVL 2 141 -5623 1353 279 13 29 chr13 40067663 40068046 -61805123 + MLT1E1 LTR MaLR 278 654 0 2128 101 0 7 chr13 40068064 40068374 -61804795 - AluSq SINE Alu 0 309 2 348 317 35 7 chr13 40068511 40068653 -61804516 + MLT1J2 LTR MaLR 37 182 -268 224 109 0 43 chr13 40069084 40069130 -61804039 + (TTCTCC)n Simple_repeat Simple_repeat 5 48 0 293 296 33 37 chr13 40069133 40069510 -61803659 - L1MCb LINE L1 -4882 1163 1062 3698 236 59 17 chr13 40069522 40071606 -61801563 - L1MB7 LINE L1 -117 6067 3890 44 0 0 0 chr13 40071674 40071718 -61801451 + AT_rich Low_complexity Low_complexity 1 44 0 222 191 0 0 chr13 40073573 40073620 -61799549 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 28 71 0 0 chr13 40073759 40073815 -61799354 + AT_rich Low_complexity Low_complexity 1 56 0 1421 235 54 22 chr13 40074369 40074774 -61798395 - LTR52 LTR ERVL -3 418 1 998 185 5 33 chr13 40077099 40077283 -61795886 - MER20 DNA MER1_type -40 179 1 2264 110 0 0 chr13 40078296 40078597 -61794572 + AluY SINE Alu 1 301 -10 6736 83 1 4 chr13 40078605 40079725 -61793444 + L1PA8 LINE L1 5055 6172 0 24 0 0 0 chr13 40079725 40079749 -61793420 + AT_rich Low_complexity Low_complexity 1 24 0 2207 200 25 35 chr13 40081161 40081650 -61791519 - MER44D DNA MER2_type -3 602 64 397 335 70 22 chr13 40081709 40081894 -61791275 + MIR SINE MIR 19 212 -50 231 364 85 54 chr13 40084413 40084765 -61788404 + L2 LINE L2 255 617 -2697 25 51 0 0 chr13 40084831 40084870 -61788299 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr13 40087999 40088032 -61785137 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr13 40088630 40088668 -61784501 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 40088884 40088912 -61784257 + AT_rich Low_complexity Low_complexity 1 28 0 835 224 25 5 chr13 40090306 40090507 -61782662 + MER3 DNA MER1_type 5 209 0 347 363 59 34 chr13 40090574 40090929 -61782240 - L2 LINE L2 -19 3294 2931 1328 304 71 34 chr13 40090934 40091500 -61781669 + MLT1E LTR MaLR 6 592 -1 480 340 69 49 chr13 40091538 40091944 -61781225 - L2 LINE L2 -459 2855 2442 397 95 0 27 chr13 40091969 40092043 -61781126 + (TTCCC)n Simple_repeat Simple_repeat 3 74 0 484 300 27 0 chr13 40092183 40092333 -61780836 - MLT1E LTR MaLR -49 544 391 270 116 0 0 chr13 40092410 40092453 -61780716 + (TCCCC)n Simple_repeat Simple_repeat 5 47 0 1884 109 29 4 chr13 40092461 40092735 -61780434 - AluSq SINE Alu -32 281 1 2043 104 10 3 chr13 40093927 40094226 -61778943 - AluSx SINE Alu -9 303 3 1764 144 18 64 chr13 40094333 40094660 -61778509 + AluSx SINE Alu 1 312 0 246 83 0 0 chr13 40094971 40095007 -61778162 + Alu SINE Alu 258 293 -9 245 341 102 28 chr13 40095472 40095648 -61777521 + MER5A DNA MER1_type 1 189 0 1454 191 11 11 chr13 40096118 40096391 -61776778 + AluJo SINE Alu 11 283 -29 261 0 0 0 chr13 40096612 40096641 -61776528 + (CA)n Simple_repeat Simple_repeat 2 30 0 3490 242 77 40 chr13 40099455 40101976 -61771193 - L1MD1 LINE L1 -12 6230 3635 24 32 0 0 chr13 40102079 40102110 -61771059 + AT_rich Low_complexity Low_complexity 1 31 0 32 67 0 0 chr13 40102178 40102238 -61770931 + AT_rich Low_complexity Low_complexity 1 60 0 912 210 126 68 chr13 40102791 40103100 -61770069 + MLT1A1 LTR MaLR 37 363 -2 238 312 35 55 chr13 40103123 40103322 -61769847 + L2 LINE L2 1858 2052 -1262 1007 168 23 37 chr13 40103418 40103632 -61769537 + L1MC3 LINE L1 5683 5893 -1892 2125 128 48 31 chr13 40103678 40104036 -61769133 + THE1B LTR MaLR 1 364 0 10120 110 4 1 chr13 40104036 40105440 -61767729 + THE1B-int LTR MaLR 1 1408 -172 606 307 148 43 chr13 40105446 40106194 -61766975 + L2 LINE L2 2461 3313 0 1711 174 0 0 chr13 40106578 40106843 -61766326 - AluSx SINE Alu -47 265 1 36 23 0 0 chr13 40106880 40106923 -61766246 + AT_rich Low_complexity Low_complexity 1 43 0 248 83 0 0 chr13 40107216 40107252 -61765917 - HSMAR1 DNA Mariner -1251 36 1 414 0 0 0 chr13 40107390 40107436 -61765733 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 276 173 39 chr13 40107523 40107679 -61765490 + L2 LINE L2 3133 3309 -4 964 106 0 183 chr13 40107680 40107915 -61765254 - 7SK RNA RNA 0 193 2 1624 231 153 52 chr13 40108355 40109092 -61764077 + LTR1B LTR ERV1 15 826 0 224 204 0 0 chr13 40109159 40109203 -61763966 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 233 128 23 chr13 40109856 40109942 -61763227 - L2 LINE L2 0 3272 3178 1439 173 42 48 chr13 40109965 40110254 -61762915 - AluSg1 SINE Alu -22 287 1 24 53 0 0 chr13 40110561 40110599 -61762570 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr13 40110882 40110909 -61762260 + AT_rich Low_complexity Low_complexity 1 27 0 319 301 53 26 chr13 40111682 40111795 -61761374 + MIR SINE MIR 130 245 -17 448 320 66 20 chr13 40111818 40112062 -61761107 + MIR SINE MIR 8 262 0 234 333 34 45 chr13 40112537 40112714 -61760455 - L1ME3A LINE L1 -109 6061 5887 2234 107 7 0 chr13 40112717 40113015 -61760154 - AluSx SINE Alu -7 305 6 23 0 0 0 chr13 40113967 40113990 -61759179 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 40114220 40114241 -61758928 + AT_rich Low_complexity Low_complexity 1 21 0 1995 239 31 55 chr13 40115558 40116208 -61756961 + MER76 LTR ERV 1 634 -54 1664 126 15 30 chr13 40116232 40116501 -61756668 - MER50 LTR ERV1 -37 697 433 1386 135 17 4 chr13 40116490 40116720 -61756449 - MER50 LTR ERV1 -501 233 1 * 21 36 0 0 chr13 40118764 40118792 -61754377 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 15 15 chr13 40118926 40118992 -61754177 + (TA)n Simple_repeat Simple_repeat 1 66 0 444 324 33 11 chr13 40119980 40120162 -61753007 + MIR SINE MIR 66 251 -11 313 299 176 49 chr13 40120338 40120746 -61752423 + L1ME4a LINE L1 5536 5995 -126 245 219 85 12 chr13 40121073 40121155 -61752014 + MIR SINE MIR 99 186 -76 2073 143 3 0 chr13 40121172 40121520 -61751649 + AluSx SINE Alu 3 351 0 273 310 39 64 chr13 40121613 40121816 -61751353 - MIR SINE MIR -1 261 64 3145 181 46 25 chr13 40122198 40122833 -61750336 - L1MB3 LINE L1 -36 6147 5500 7486 133 131 37 chr13 40122833 40124385 -61748784 + pTR5 LTR ERV1 742 2438 0 851 190 42 59 chr13 40124393 40124556 -61748613 - L1MB3 LINE L1 -688 5492 5328 1805 111 40 34 chr13 40124556 40124853 -61748316 - AluY SINE Alu -10 301 3 851 190 42 59 chr13 40124853 40125090 -61748079 - L1MB3 LINE L1 -852 5328 5092 335 212 0 59 chr13 40125094 40125201 -61747968 - L1M4 LINE L1 -3856 2526 2426 26 30 0 0 chr13 40125619 40125652 -61747517 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 40127260 40127281 -61745888 + AT_rich Low_complexity Low_complexity 1 21 0 271 289 167 33 chr13 40127606 40127786 -61745383 - MIR SINE MIR -1 261 58 180 388 67 29 chr13 40128054 40128095 -61745074 + MIR SINE MIR 11 49 -213 821 269 14 0 chr13 40128095 40128311 -61744858 + MER20 DNA MER1_type 1 219 0 180 388 67 29 chr13 40128311 40128509 -61744660 + MIR SINE MIR 49 259 -3 41 48 0 0 chr13 40128664 40128726 -61744443 + AT_rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr13 40128920 40128943 -61744226 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 0 0 chr13 40129074 40129146 -61744023 + (TATG)n Simple_repeat Simple_repeat 3 74 0 25 65 0 0 chr13 40129595 40129641 -61743528 + AT_rich Low_complexity Low_complexity 1 46 0 1226 201 4 4 chr13 40130800 40131039 -61742130 + L1PA16 LINE L1 5912 6150 -16 1264 199 33 52 chr13 40131667 40132105 -61741064 + MER52A LTR ERV1 664 1230 -525 295 296 52 35 chr13 40132141 40132256 -61740913 + MER52A LTR ERV1 1232 1348 -407 * 391 266 6 51 chr13 40132230 40132388 -61740781 + LTR28 LTR ERV1 572 722 -298 1813 223 0 40 chr13 40132551 40132973 -61740196 + MER52A LTR ERV1 1351 1755 0 392 66 0 16 chr13 40132973 40133034 -61740135 + (TA)n Simple_repeat Simple_repeat 1 60 0 242 182 0 91 chr13 40133034 40133144 -61740025 - L1MC4 LINE L1 -1333 6709 6610 22 56 0 0 chr13 40133314 40133350 -61739819 + AT_rich Low_complexity Low_complexity 1 36 0 2133 121 3 0 chr13 40133464 40133762 -61739407 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 40135247 40135272 -61737897 + AT_rich Low_complexity Low_complexity 1 25 0 2178 113 0 0 chr13 40136127 40136419 -61736750 + AluSc SINE Alu 1 292 -17 1984 172 105 0 chr13 40136970 40137359 -61735810 - MSTB1 LTR MaLR -2 430 1 1854 162 0 0 chr13 40137544 40137858 -61735311 + L1 LINE L1 4875 5188 -958 23 0 0 0 chr13 40138963 40138986 -61734183 + AT_rich Low_complexity Low_complexity 1 23 0 2972 147 143 22 chr13 40139592 40140223 -61732946 + MER39 LTR ERV1 1 707 0 49 76 0 0 chr13 40140411 40140516 -61732653 + AT_rich Low_complexity Low_complexity 1 105 0 2334 87 3 6 chr13 40140874 40141186 -61731983 + AluSx SINE Alu 1 311 -1 7005 33 1 2 chr13 40141517 40142374 -61730795 - L1P LINE L1 -932 5214 4359 * 7123 17 2 0 chr13 40142373 40143214 -61729955 + L1PA4 LINE L1 5307 6150 -5 2214 143 110 7 chr13 40143216 40143634 -61729535 - MER57-int LTR ERV1 -3561 3976 3516 21 71 0 0 chr13 40193755 40193797 -61679372 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr13 40195715 40195737 -61677432 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 381 229 0 0 chr13 40196643 40196713 -61676456 + MER30 DNA MER1_type 161 230 0 914 329 82 2 chr13 40196772 40197198 -61675971 - HERV16 LTR ERVL -3603 1393 934 482 379 17 4 chr13 40197230 40197470 -61675699 - LTR16A LTR ERVL -153 297 55 317 322 55 35 chr13 40197514 40197768 -61675401 + L1M4 LINE L1 3209 3457 -2689 2044 81 0 0 chr13 40197768 40198040 -61675129 + L1PA6 LINE L1 5883 6154 0 317 322 55 35 chr13 40198040 40198298 -61674871 + L1M4 LINE L1 3457 3731 -2415 28 48 0 0 chr13 40198312 40198354 -61674815 + AT_rich Low_complexity Low_complexity 1 42 0 231 303 14 32 chr13 40198374 40198592 -61674577 + L1M4 LINE L1 5018 5231 -915 3563 129 15 26 chr13 40198760 40199410 -61673759 - L1M1 LINE L1 -4379 3186 2544 6317 222 23 9 chr13 40199412 40200719 -61672450 - L1M1 LINE L1 -6227 1338 14 1928 152 0 0 chr13 40201793 40202089 -61671080 + AluSx SINE Alu 1 296 -16 1198 250 24 10 chr13 40202184 40203202 -61669967 + L1 LINE L1 2457 3499 -2647 225 182 0 0 chr13 40203194 40203238 -61669931 + L1 LINE L1 3287 3330 -2816 * 204 40 0 0 chr13 40203711 40203736 -61669433 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5544 108 21 1 chr13 40203736 40205087 -61668082 - L1PA10 LINE L1 -21 6147 4768 865 71 0 0 chr13 40205087 40205195 -61667974 + L1PA5 LINE L1 6030 6141 -13 22 0 0 0 chr13 40205211 40205233 -61667936 + AT_rich Low_complexity Low_complexity 1 22 0 201 211 0 0 chr13 40205396 40205453 -61667716 + (TTCA)n Simple_repeat Simple_repeat 1 57 0 742 273 83 27 chr13 40205471 40205868 -61667301 + MLT1J2 LTR MaLR 1 436 -10 3490 247 88 19 chr13 40206194 40208196 -61664973 - L1MC/D LINE L1 -487 5755 3635 24 32 0 0 chr13 40208299 40208330 -61664839 + AT_rich Low_complexity Low_complexity 1 31 0 32 67 0 0 chr13 40208398 40208458 -61664711 + AT_rich Low_complexity Low_complexity 1 60 0 912 210 126 68 chr13 40209011 40209320 -61663849 + MLT1A1 LTR MaLR 37 363 -2 238 312 35 55 chr13 40209343 40209542 -61663627 + L2 LINE L2 1858 2052 -1262 1007 168 23 37 chr13 40209638 40209852 -61663317 + L1MC3 LINE L1 5683 5893 -1892 2125 128 48 31 chr13 40209898 40210256 -61662913 + THE1B LTR MaLR 1 364 0 10120 110 4 1 chr13 40210256 40211660 -61661509 + THE1B-int LTR MaLR 1 1408 -172 606 307 148 43 chr13 40211666 40212414 -61660755 + L2 LINE L2 2461 3313 0 1711 174 0 0 chr13 40212798 40213063 -61660106 - AluSx SINE Alu -47 265 1 36 23 0 0 chr13 40213100 40213143 -61660026 + AT_rich Low_complexity Low_complexity 1 43 0 248 83 0 0 chr13 40213436 40213472 -61659697 - HSMAR1 DNA Mariner -1251 36 1 414 0 0 0 chr13 40213610 40213656 -61659513 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 276 173 39 chr13 40213743 40213899 -61659270 + L2 LINE L2 3133 3309 -4 964 106 0 183 chr13 40213900 40214135 -61659034 - 7SK RNA RNA 0 193 2 1624 231 153 52 chr13 40214575 40215312 -61657857 + LTR1B LTR ERV1 15 826 0 224 204 0 0 chr13 40215379 40215423 -61657746 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 233 128 23 chr13 40216076 40216162 -61657007 - L2 LINE L2 0 3272 3178 1439 173 42 48 chr13 40216185 40216474 -61656695 - AluSg1 SINE Alu -22 287 1 24 53 0 0 chr13 40216781 40216819 -61656350 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr13 40217102 40217129 -61656040 + AT_rich Low_complexity Low_complexity 1 27 0 319 301 53 26 chr13 40217902 40218015 -61655154 + MIR SINE MIR 130 245 -17 448 320 66 20 chr13 40218038 40218282 -61654887 + MIR SINE MIR 8 262 0 234 333 34 45 chr13 40218757 40218934 -61654235 - L1ME3A LINE L1 -109 6061 5887 2234 107 7 0 chr13 40218937 40219235 -61653934 - AluSx SINE Alu -7 305 6 23 0 0 0 chr13 40220187 40220210 -61652959 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 40220440 40220461 -61652708 + AT_rich Low_complexity Low_complexity 1 21 0 1995 239 31 55 chr13 40221778 40222428 -61650741 + MER76 LTR ERV 1 634 -54 1664 126 15 30 chr13 40222452 40222721 -61650448 - MER50 LTR ERV1 -37 697 433 1386 135 17 4 chr13 40222710 40222940 -61650229 - MER50 LTR ERV1 -501 233 1 * 21 36 0 0 chr13 40224984 40225012 -61648157 + AT_rich Low_complexity Low_complexity 1 28 0 193 182 15 15 chr13 40225146 40225212 -61647957 + (TA)n Simple_repeat Simple_repeat 1 66 0 444 324 33 11 chr13 40226200 40226382 -61646787 + MIR SINE MIR 66 251 -11 313 299 176 49 chr13 40226558 40226966 -61646203 + L1ME4a LINE L1 5536 5995 -126 245 219 85 12 chr13 40227293 40227375 -61645794 + MIR SINE MIR 99 186 -76 2073 143 3 0 chr13 40227392 40227740 -61645429 + AluSx SINE Alu 3 351 0 273 310 39 64 chr13 40227833 40228036 -61645133 - MIR SINE MIR -1 261 64 3145 181 46 25 chr13 40228418 40229053 -61644116 - L1MB3 LINE L1 -36 6147 5500 7486 133 131 37 chr13 40229053 40230605 -61642564 + pTR5 LTR ERV1 742 2438 0 851 190 42 59 chr13 40230613 40230776 -61642393 - L1MB3 LINE L1 -688 5492 5328 1805 111 40 34 chr13 40230776 40231073 -61642096 - AluY SINE Alu -10 301 3 851 190 42 59 chr13 40231073 40231310 -61641859 - L1MB3 LINE L1 -852 5328 5092 335 212 0 59 chr13 40231314 40231421 -61641748 - L1M4 LINE L1 -3856 2526 2426 26 30 0 0 chr13 40231839 40231872 -61641297 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 40233480 40233501 -61639668 + AT_rich Low_complexity Low_complexity 1 21 0 271 289 167 33 chr13 40233826 40234006 -61639163 - MIR SINE MIR -1 261 58 180 388 67 29 chr13 40234274 40234315 -61638854 + MIR SINE MIR 11 49 -213 821 269 14 0 chr13 40234315 40234531 -61638638 + MER20 DNA MER1_type 1 219 0 180 388 67 29 chr13 40234531 40234729 -61638440 + MIR SINE MIR 49 259 -3 41 48 0 0 chr13 40234884 40234946 -61638223 + AT_rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr13 40235140 40235163 -61638006 + AT_rich Low_complexity Low_complexity 1 23 0 257 278 0 0 chr13 40235294 40235366 -61637803 + (TATG)n Simple_repeat Simple_repeat 3 74 0 25 65 0 0 chr13 40235815 40235861 -61637308 + AT_rich Low_complexity Low_complexity 1 46 0 1226 201 4 4 chr13 40237020 40237259 -61635910 + L1PA16 LINE L1 5912 6150 -16 1264 199 33 52 chr13 40237887 40238325 -61634844 + MER52A LTR ERV1 664 1230 -525 295 296 52 35 chr13 40238361 40238476 -61634693 + MER52A LTR ERV1 1232 1348 -407 * 391 266 6 51 chr13 40238450 40238608 -61634561 + LTR28 LTR ERV1 572 722 -298 1813 223 0 40 chr13 40238771 40239193 -61633976 + MER52A LTR ERV1 1351 1755 0 392 66 0 16 chr13 40239193 40239254 -61633915 + (TA)n Simple_repeat Simple_repeat 1 60 0 242 182 0 91 chr13 40239254 40239364 -61633805 - L1MC4 LINE L1 -1333 6709 6610 22 56 0 0 chr13 40239534 40239570 -61633599 + AT_rich Low_complexity Low_complexity 1 36 0 2133 121 3 0 chr13 40239684 40239982 -61633187 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 40241467 40241492 -61631677 + AT_rich Low_complexity Low_complexity 1 25 0 2178 113 0 0 chr13 40242346 40242638 -61630531 + AluSc SINE Alu 1 292 -17 1984 172 105 0 chr13 40243189 40243578 -61629591 - MSTB1 LTR MaLR -2 430 1 1854 162 0 0 chr13 40243763 40244077 -61629092 + L1 LINE L1 4875 5188 -958 23 0 0 0 chr13 40245182 40245205 -61627964 + AT_rich Low_complexity Low_complexity 1 23 0 2972 147 143 22 chr13 40245811 40246442 -61626727 + MER39 LTR ERV1 1 707 0 49 76 0 0 chr13 40246630 40246735 -61626434 + AT_rich Low_complexity Low_complexity 1 105 0 2334 87 3 6 chr13 40247093 40247405 -61625764 + AluSx SINE Alu 1 311 -1 3870 246 71 33 chr13 40247766 40249150 -61624019 - Charlie1a DNA MER1_type 0 1455 20 219 273 202 0 chr13 40250808 40250907 -61622262 - L2 LINE L2 -16 3297 3179 429 323 153 23 chr13 40251300 40251743 -61621426 - L2 LINE L2 -874 2440 1940 2451 218 8 4 chr13 40251955 40252427 -61620742 + MLT2B2 LTR ERVL 2 475 -40 21 0 0 0 chr13 40252640 40252661 -61620508 + AT_rich Low_complexity Low_complexity 1 21 0 9881 32 3 2 chr13 40253808 40255325 -61617844 - L1P1 LINE L1 -458 5697 4178 * 15542 41 0 0 chr13 40255321 40257262 -61615907 + L1P LINE L1 1751 3691 -2455 27 49 0 0 chr13 40257830 40257871 -61615298 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr13 40259475 40259521 -61613648 + AT_rich Low_complexity Low_complexity 1 46 0 279 231 42 63 chr13 40259916 40260059 -61613110 - L1M4 LINE L1 -2164 3982 3843 25 0 0 0 chr13 40260365 40260390 -61612779 + AT_rich Low_complexity Low_complexity 1 25 0 1185 293 129 27 chr13 40260802 40261330 -61611839 + MLT1E LTR MaLR 1 492 -13 248 297 116 22 chr13 40261379 40261517 -61611652 + MLT1E-int LTR MaLR 49 199 -1172 * 528 260 25 15 chr13 40261501 40261697 -61611472 + MLT1E-int LTR MaLR 301 498 -873 245 365 9 0 chr13 40261902 40262009 -61611160 + MLT1E-int LTR MaLR 777 884 -487 2324 128 34 3 chr13 40262117 40262470 -61610699 - THE1B LTR MaLR 0 364 1 2812 133 5 7 chr13 40262470 40262898 -61610271 - THE1B-int LTR MaLR 0 1580 1154 1750 142 68 9 chr13 40262898 40263222 -61609947 + MER61A LTR ERV1 1 343 0 2368 174 35 55 chr13 40263222 40263554 -61609615 + MER61A-int LTR ERV1 1 338 -4879 830 102 78 0 chr13 40263554 40263682 -61609487 + MER85 DNA T2_type 2 139 0 2368 174 35 55 chr13 40263682 40263810 -61609359 + MER61A-int LTR ERV1 338 449 -4768 2470 62 3 0 chr13 40263810 40264117 -61609052 - AluY SINE Alu -3 308 1 2368 174 35 55 chr13 40264117 40264234 -61608935 + MER61A-int LTR ERV1 449 567 -4650 * 3184 110 77 6 chr13 40264204 40264724 -61608445 + MER61A-int LTR ERV1 1384 1940 -3277 1089 207 22 4 chr13 40264936 40265168 -61608001 - MER46A DNA MER2_type 0 236 1 1673 216 14 45 chr13 40265186 40265226 -61607943 - MLT2D LTR ERVL 0 414 374 360 43 0 0 chr13 40265226 40265272 -61607897 + (TG)n Simple_repeat Simple_repeat 2 47 0 1673 216 14 45 chr13 40265272 40265658 -61607511 - MLT2D LTR ERVL -40 374 1 2042 210 184 11 chr13 40265658 40265796 -61607373 - ERVL-D LTR ERVL -8 5756 5643 2541 106 57 7 chr13 40265796 40266201 -61606968 + MSTA LTR MaLR 4 428 0 2042 210 184 11 chr13 40266201 40266590 -61606579 - ERVL-D LTR ERVL -121 5643 5138 1042 187 100 79 chr13 40266593 40266758 -61606411 + MLT1A2 LTR MaLR 1 161 -213 1727 168 18 0 chr13 40266758 40267043 -61606126 + AluJb SINE Alu 7 296 -16 1042 187 100 79 chr13 40267043 40267338 -61605831 + MLT1A2 LTR MaLR 161 374 0 1869 205 16 16 chr13 40267341 40267722 -61605447 - ERVL-D LTR ERVL -628 5136 4756 1157 203 13 39 chr13 40267864 40268169 -61605000 + L1MA9 LINE L1 6015 6311 -1 2066 209 92 4 chr13 40270365 40270833 -61602336 + LTR22 LTR ERVK 1 509 0 1120 180 99 123 chr13 40271562 40271967 -61601202 + MSTD LTR MaLR 2 396 0 188 397 17 34 chr13 40272044 40272223 -61600946 + L2 LINE L2 1970 2145 -1169 204 161 48 16 chr13 40272801 40272863 -61600306 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chr13 40273436 40273464 -61599705 + AT_rich Low_complexity Low_complexity 1 28 0 1913 240 63 25 chr13 40276248 40276723 -61596446 - MLT1D LTR MaLR -12 493 1 229 253 160 0 chr13 40276951 40277026 -61596143 + L1MC4 LINE L1 6616 6702 -1340 269 309 0 12 chr13 40277028 40277112 -61596057 + (TA)n Simple_repeat Simple_repeat 1 83 0 22 80 0 0 chr13 40277139 40277189 -61595980 + AT_rich Low_complexity Low_complexity 1 50 0 1333 241 0 10 chr13 40277460 40277750 -61595419 - AluJo SINE Alu -25 287 1 737 114 73 0 chr13 40279252 40279375 -61593794 + L1MA1 LINE L1 6171 6302 0 444 357 16 44 chr13 40279456 40279638 -61593531 - L3 LINE CR1 -930 647 471 2480 196 58 7 chr13 40279638 40280211 -61592958 - L1 LINE L1 -1624 4522 3921 3988 171 33 14 chr13 40280253 40281133 -61592036 + L1M2 LINE L1 4466 5389 -902 1631 209 9 20 chr13 40281133 40281482 -61591687 - MER7A DNA MER2_type 0 346 4 3988 171 33 14 chr13 40281482 40281920 -61591249 + L1M2 LINE L1 5389 5817 -474 2129 94 6 61 chr13 40282041 40282369 -61590800 - AluSx SINE Alu -2 310 1 425 255 85 55 chr13 40282387 40282587 -61590582 + L1MC4a LINE L1 5721 5926 -1882 723 126 105 32 chr13 40282587 40282777 -61590392 + L1MA7 LINE L1 6086 6289 -2 434 333 107 19 chr13 40283316 40283577 -61589592 + MLT1I LTR MaLR 108 391 -18 836 264 110 22 chr13 40284233 40284506 -61588663 + LTR40a LTR ERVL 6 302 -217 323 257 46 46 chr13 40287165 40287274 -61585895 + MLT1E1 LTR MaLR 33 141 -513 9372 41 1 0 chr13 40288217 40290134 -61583035 - L1PA5 LINE L1 -3 6151 4233 1698 42 14 1 chr13 40290696 40291455 -61581714 - L1PA5 LINE L1 0 6154 5307 * 7835 26 0 1 chr13 40291454 40292391 -61580778 + L1PA5 LINE L1 4359 5294 -852 279 371 61 25 chr13 40292478 40292675 -61580494 + L2 LINE L2 1269 1472 -1842 23 33 0 0 chr13 40292812 40292842 -61580327 + AT_rich Low_complexity Low_complexity 1 30 0 1484 221 0 3 chr13 40292905 40293195 -61579974 + AluJo SINE Alu 5 293 -19 239 266 104 40 chr13 40293246 40293419 -61579750 + L1ME3A LINE L1 1526 1709 -4833 461 167 12 0 chr13 40293573 40293657 -61579512 - AluS SINE Alu -228 85 1 231 305 82 50 chr13 40293665 40294249 -61578920 + L1ME3A LINE L1 5170 5772 -872 1400 281 145 22 chr13 40294343 40294450 -61578719 + L1ME3A LINE L1 5797 5890 -778 1393 188 43 0 chr13 40294450 40294726 -61578443 + L1PB4 LINE L1 5869 6156 0 1400 281 145 22 chr13 40294726 40295377 -61577792 + L1ME3A LINE L1 5890 6648 -20 4374 188 10 5 chr13 40295975 40296842 -61576327 - L1P LINE L1 -1107 5039 4168 * 7297 222 16 14 chr13 40296839 40298557 -61574612 + L1P LINE L1 1729 3449 -2697 10121 91 5 30 chr13 40298661 40300178 -61572991 + MER61-int LTR ERV1 1993 3470 -1747 9058 129 13 16 chr13 40300224 40301847 -61571322 + MER61-int LTR ERV1 3470 5132 -85 5989 143 46 14 chr13 40301950 40302933 -61570236 - THE1B-int LTR MaLR -565 1015 2 2304 135 11 8 chr13 40302934 40303296 -61569873 - THE1B LTR MaLR 0 364 2 24 0 0 0 chr13 40303462 40303486 -61569683 + AT_rich Low_complexity Low_complexity 1 24 0 289 303 119 0 chr13 40303560 40303669 -61569500 + MLT1A2 LTR MaLR 1 122 -471 255 330 19 10 chr13 40303987 40304090 -61569079 - L1MEd LINE L1 -5423 696 593 1007 228 8 51 chr13 40305128 40305146 -61568023 + MLT1A2 LTR MaLR 132 149 -225 1189 233 69 23 chr13 40305146 40305493 -61567676 + MLT1A1 LTR MaLR 1 363 -2 1007 228 8 51 chr13 40305493 40305728 -61567441 + MLT1A2 LTR MaLR 149 374 0 678 212 178 0 chr13 40305728 40305969 -61567200 + MLT1A1-int LTR MaLR 1 401 -970 2798 139 9 0 chr13 40305969 40306399 -61566770 + MER57B LTR ERV1 1 434 0 4536 153 16 5 chr13 40306399 40307274 -61565895 + MER57B-int LTR ERV1 1 886 -5060 330 143 0 0 chr13 40307271 40307320 -61565849 + MER57-int LTR ERV1 2581 2629 -4908 * 5769 145 79 19 chr13 40307316 40308389 -61564780 + MER57-int LTR ERV1 2167 3304 -2642 7364 34 1 3 chr13 40308392 40310047 -61563122 - L1PA4 LINE L1 -5 6150 4497 7045 31 1 0 chr13 40310047 40310895 -61562274 + L1PA4 LINE L1 3637 4485 -1661 1096 246 49 20 chr13 40310893 40311283 -61561886 - L1M4 LINE L1 -782 5364 4964 * 1233 238 82 12 chr13 40311290 40311663 -61561506 + MLT2B1 LTR ERVL 5 397 0 255 125 0 0 chr13 40311681 40311721 -61561448 + (TG)n Simple_repeat Simple_repeat 1 40 0 2158 233 38 28 chr13 40311721 40312400 -61560769 - L1M4 LINE L1 -1202 4944 4259 467 360 80 0 chr13 40312710 40312910 -61560259 + MIR SINE MIR 11 226 -36 812 244 0 0 chr13 40313034 40313202 -61559967 - AluJb SINE Alu -23 289 122 205 341 119 49 chr13 40313218 40313444 -61559725 + L2 LINE L2 2619 2860 -454 228 121 0 86 chr13 40313497 40313555 -61559614 + (CA)n Simple_repeat Simple_repeat 2 54 0 1923 141 7 3 chr13 40313697 40313995 -61559174 + AluSx SINE Alu 1 299 -13 476 164 0 0 chr13 40314256 40314351 -61558818 + AluSp/q SINE Alu 211 305 0 241 387 57 0 chr13 40314351 40314457 -61558712 + L2 LINE L2 3161 3272 0 468 312 134 27 chr13 40315586 40315878 -61557291 - L2 LINE L2 -4 3309 2987 215 192 154 26 chr13 40316001 40316079 -61557090 - L2 LINE L2 -902 2412 2325 506 178 10 2 chr13 40316083 40316192 -61556977 + L1P5 LINE L1 5494 5601 -555 24 89 0 30 chr13 40316268 40316369 -61556800 + AT_rich Low_complexity Low_complexity 1 98 0 3346 177 11 6 chr13 40316484 40317110 -61556059 + L1P LINE L1 3544 4172 -1974 1355 273 52 47 chr13 40317748 40318454 -61554715 + L1ME3A LINE L1 5461 6170 0 231 279 57 57 chr13 40320020 40320178 -61552991 - L2 LINE L2 -65 3248 3091 1187 231 66 55 chr13 40320183 40320637 -61552532 + MLT1C LTR MaLR 9 467 0 430 333 136 9 chr13 40320959 40321187 -61551982 + MIR SINE MIR 6 262 0 254 28 0 28 chr13 40322824 40322860 -61550309 + (TA)n Simple_repeat Simple_repeat 2 36 0 195 372 0 43 chr13 40322983 40323077 -61550092 + MIR SINE MIR 62 151 -57 22 0 0 0 chr13 40323810 40323832 -61549337 + AT_rich Low_complexity Low_complexity 1 22 0 226 313 149 60 chr13 40325102 40325450 -61547719 + L2 LINE L2 2581 2959 -355 795 314 124 57 chr13 40326411 40326609 -61546560 + L2 LINE L2 1762 1945 -1369 2107 107 0 0 chr13 40326609 40326898 -61546271 - AluSg SINE Alu -21 289 1 795 314 124 57 chr13 40326898 40327448 -61545721 + L2 LINE L2 1945 2560 -754 245 333 29 0 chr13 40327622 40327760 -61545409 + HAL1 LINE L1 1538 1679 -828 374 146 131 46 chr13 40328086 40328216 -61544953 - LTR19A LTR ERV1 -16 470 330 270 293 143 15 chr13 40329460 40329593 -61543576 + MLT1H1 LTR MaLR 125 274 -281 269 254 0 15 chr13 40329776 40329843 -61543326 + L2 LINE L2 2728 2793 -521 29 60 0 0 chr13 40330688 40330738 -61542431 + AT_rich Low_complexity Low_complexity 1 50 0 246 253 0 88 chr13 40331029 40331120 -61542049 - MIR SINE MIR -70 192 110 22 0 0 0 chr13 40331363 40331385 -61541784 + AT_rich Low_complexity Low_complexity 1 22 0 39 60 0 0 chr13 40331466 40331533 -61541636 + AT_rich Low_complexity Low_complexity 1 67 0 270 374 68 14 chr13 40331645 40331792 -61541377 + MIR SINE MIR 8 162 -100 348 283 21 0 chr13 40333437 40333582 -61539587 + L1MC4a LINE L1 5738 5885 -1923 469 360 68 34 chr13 40334095 40334476 -61538693 - MLT1I LTR MaLR -15 394 1 213 277 77 0 chr13 40334614 40334679 -61538490 + MIR SINE MIR 41 110 -152 185 234 31 31 chr13 40336114 40336178 -61536991 - MIR SINE MIR -79 183 120 407 231 101 77 chr13 40336340 40336509 -61536660 - MER20 DNA MER1_type -1 218 46 25 75 0 0 chr13 40336640 40336693 -61536476 + AT_rich Low_complexity Low_complexity 1 53 0 628 272 72 102 chr13 40337356 40337886 -61535283 - L1ME LINE L1 -5547 523 10 25 31 0 0 chr13 40338609 40338641 -61534528 + AT_rich Low_complexity Low_complexity 1 32 0 2034 110 34 3 chr13 40339358 40339649 -61533520 + AluSx SINE Alu 1 300 -12 674 160 14 123 chr13 40339690 40339902 -61533267 - L1MC3 LINE L1 -8 7777 7589 206 309 24 111 chr13 40341656 40341774 -61531395 - MIR SINE MIR -28 234 140 2126 97 28 0 chr13 40341774 40342064 -61531105 + AluSg SINE Alu 1 298 -12 206 309 24 111 chr13 40342064 40342152 -61531017 - MIR SINE MIR -122 140 46 22 0 0 0 chr13 40342976 40342998 -61530171 + AT_rich Low_complexity Low_complexity 1 22 0 2492 66 0 0 chr13 40343418 40343723 -61529446 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 40344377 40344408 -61528761 + AT_rich Low_complexity Low_complexity 1 31 0 12209 91 10 4 chr13 40345330 40347868 -61525301 - L1PA7 LINE L1 -2 6152 3608 237 65 0 0 chr13 40347868 40347899 -61525270 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 2660 152 33 0 chr13 40348414 40348842 -61524327 - MER41-int LTR ERV1 -792 5154 4713 3480 37 5 5 chr13 40348842 40349278 -61523891 - L1P LINE L1 -2045 4101 3666 22 0 0 0 chr13 40349887 40349909 -61523260 + AT_rich Low_complexity Low_complexity 1 22 0 2331 50 40 10 chr13 40350337 40350637 -61522532 + AluY SINE Alu 1 309 -2 441 0 0 0 chr13 40350698 40350747 -61522422 + (CA)n Simple_repeat Simple_repeat 2 50 0 1265 218 24 34 chr13 40353326 40353624 -61519545 + AluJo SINE Alu 1 295 -7 314 272 64 79 chr13 40354642 40354844 -61518325 - L2 LINE L2 -455 2859 2661 29 0 0 0 chr13 40354901 40354930 -61518239 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 40355480 40355506 -61517663 + AT_rich Low_complexity Low_complexity 1 26 0 941 167 57 0 chr13 40355966 40356193 -61516976 - L1MA9 LINE L1 -1 6311 6072 1236 243 13 13 chr13 40356194 40356511 -61516658 - L1 LINE L1 -2234 4148 3832 * 2034 249 117 61 chr13 40356502 40356889 -61516280 - L1 LINE L1 -3826 2556 2192 2226 116 0 0 chr13 40356889 40357191 -61515978 + AluSx SINE Alu 3 304 -8 2034 249 117 61 chr13 40357191 40358480 -61514689 - L1 LINE L1 -4190 2192 777 3744 246 28 52 chr13 40358494 40359602 -61513567 + MSTD-int LTR MaLR 561 1730 -5 596 233 52 1 chr13 40359613 40359752 -61513417 + MSTD LTR MaLR 3 162 -212 1026 106 0 7 chr13 40359758 40359900 -61513269 + AluSq/x SINE Alu 1 141 -171 1860 104 7 58 chr13 40359904 40360049 -61513120 + AluSx SINE Alu 2 124 -188 1669 120 117 15 chr13 40360049 40360323 -61512846 + AluSg1 SINE Alu 2 303 -6 1860 104 7 58 chr13 40360323 40360485 -61512684 + AluSx SINE Alu 124 293 -19 724 247 46 0 chr13 40360503 40360677 -61512492 + MSTD LTR MaLR 215 396 0 30 59 0 0 chr13 40360698 40360749 -61512420 + AT_rich Low_complexity Low_complexity 1 51 0 945 266 52 46 chr13 40362152 40362696 -61510473 - L1ME1 LINE L1 -10 6225 5679 * 1939 262 81 41 chr13 40362678 40362778 -61510391 - L1ME1 LINE L1 -3267 2948 2854 2045 127 3 0 chr13 40362778 40363097 -61510072 - AluSp SINE Alu 0 320 1 1939 262 81 41 chr13 40363097 40365037 -61508132 - L1ME1 LINE L1 -3361 2854 855 610 295 47 31 chr13 40365026 40365284 -61507885 - L1ME1 LINE L1 -6097 299 38 * 187 228 175 0 chr13 40365284 40365341 -61507828 - L3 LINE CR1 -893 684 618 238 255 191 0 chr13 40366149 40366290 -61506879 + L1ME3A LINE L1 854 1021 -4887 510 299 40 68 chr13 40366319 40366920 -61506249 + L1ME3A LINE L1 1103 1870 -4737 695 303 100 63 chr13 40367435 40368394 -61504775 + L1ME3A LINE L1 2411 3413 -3013 665 309 112 19 chr13 40368641 40368875 -61504294 + L1ME3A LINE L1 5598 5809 -641 222 37 0 0 chr13 40368875 40368902 -61504267 + (TG)n Simple_repeat Simple_repeat 2 28 0 665 309 112 19 chr13 40368902 40369364 -61503805 + L1ME3A LINE L1 5809 6441 -9 230 224 0 60 chr13 40369629 40369696 -61503473 + GA-rich Low_complexity Low_complexity 2 64 0 23 0 0 0 chr13 40369789 40369812 -61503357 + AT_rich Low_complexity Low_complexity 1 23 0 1753 152 3 37 chr13 40370062 40370384 -61502785 - AluSq SINE Alu -2 311 1 1949 288 44 14 chr13 40370841 40371571 -61501598 + HsTC2 DNA Tc2 2 753 -1145 553 273 53 36 chr13 40371578 40371915 -61501254 + HsTC2 DNA Tc2 1281 1799 -99 5301 124 56 29 chr13 40372670 40373909 -61499260 + L1PB2 LINE L1 4878 6150 -1 1077 147 46 0 chr13 40374091 40374309 -61498860 - L1MA8 LINE L1 -5 6286 6059 207 0 0 0 chr13 40375429 40375452 -61497717 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1197 206 3 87 chr13 40375456 40375766 -61497403 - AluJb SINE Alu -17 285 2 3575 145 0 7 chr13 40376920 40377507 -61495662 - L1P LINE L1 -869 5277 4695 5580 100 40 1 chr13 40377538 40378338 -61494831 + L1PA10 LINE L1 5338 6168 0 23 0 0 0 chr13 40378545 40378568 -61494601 + AT_rich Low_complexity Low_complexity 1 23 0 259 250 0 56 chr13 40378568 40378728 -61494441 + A-rich Low_complexity Low_complexity 4 154 0 480 339 94 51 chr13 40378750 40379358 -61493811 + HAL1b LINE L1 1 634 -714 1864 120 0 28 chr13 40379396 40379679 -61493490 + AluSx SINE Alu 1 275 -37 594 0 0 0 chr13 40379686 40379752 -61493417 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 6578 194 43 18 chr13 40379752 40381476 -61491693 - L1M1 LINE L1 -743 6822 5183 * 17382 175 74 21 chr13 40381472 40383629 -61489540 - L1M1 LINE L1 -3821 3744 1326 620 62 0 0 chr13 40383629 40383709 -61489460 + L1PA5 LINE L1 6075 6154 0 17382 175 74 21 chr13 40383709 40385092 -61488077 - L1M1 LINE L1 -6239 1326 17 186 224 0 0 chr13 40385152 40385201 -61487968 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 33 0 0 chr13 40385296 40385326 -61487843 + AT_rich Low_complexity Low_complexity 1 30 0 235 419 29 12 chr13 40387702 40387874 -61485295 - MIR SINE MIR -26 236 62 1594 83 9 9 chr13 40388001 40388229 -61484940 + L1PA7 LINE L1 5882 6109 -45 331 321 121 37 chr13 40388248 40388438 -61484731 - MIR SINE MIR -56 206 1 453 170 89 18 chr13 40389992 40390104 -61483065 + L1MA8 LINE L1 6166 6285 -6 232 220 0 30 chr13 40390108 40390208 -61482961 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 34 55 0 0 chr13 40390249 40390304 -61482865 + AT_rich Low_complexity Low_complexity 1 55 0 221 198 57 19 chr13 40390359 40390465 -61482704 + (TA)n Simple_repeat Simple_repeat 1 110 0 * 294 195 46 46 chr13 40390415 40390589 -61482580 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 319 151 0 47 chr13 40390687 40390773 -61482396 + (TA)n Simple_repeat Simple_repeat 1 82 0 205 190 17 35 chr13 40390849 40390907 -61482262 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 30 45 0 0 chr13 40391886 40391930 -61481239 + AT_rich Low_complexity Low_complexity 1 44 0 776 194 10 135 chr13 40393963 40394251 -61478918 + MSTB2 LTR MaLR 2 259 -179 2474 50 0 0 chr13 40394324 40394623 -61478546 + AluY SINE Alu 1 299 -12 470 264 68 0 chr13 40394627 40394775 -61478394 + MSTB2 LTR MaLR 300 457 0 2230 120 0 3 chr13 40395133 40395441 -61477728 + AluSq SINE Alu 1 307 -6 560 321 60 45 chr13 40395766 40396315 -61476854 - MERVL LTR ERVL -3070 2415 1859 318 350 56 40 chr13 40396491 40396865 -61476304 - MERVL LTR ERVL -3418 1578 1199 310 343 59 35 chr13 40397211 40397500 -61475669 - L1ME LINE L1 -298 5823 5528 751 293 85 42 chr13 40397776 40398810 -61474359 + L1MDa LINE L1 1048 2126 -4414 347 113 16 0 chr13 40398835 40398897 -61474272 + (TA)n Simple_repeat Simple_repeat 2 64 0 2490 58 0 3 chr13 40399101 40399413 -61473756 + AluY SINE Alu 1 311 0 426 20 0 0 chr13 40399750 40399801 -61473368 + (CA)n Simple_repeat Simple_repeat 2 52 0 337 303 68 61 chr13 40401152 40401496 -61471673 + MLT1I LTR MaLR 76 387 -22 229 330 23 11 chr13 40403209 40403297 -61469872 + L2 LINE L2 3191 3279 -34 225 154 0 0 chr13 40403341 40403380 -61469789 + A-rich Low_complexity Low_complexity 1 39 0 1893 117 3 0 chr13 40403870 40404152 -61469017 - L1PA7 LINE L1 -1 6153 5871 2272 204 38 106 chr13 40404154 40404912 -61468257 + L1MC3 LINE L1 6874 7580 -205 947 186 15 10 chr13 40404959 40405163 -61468006 + AluJo SINE Alu 1 205 -107 376 110 0 13 chr13 40405214 40405289 -61467880 + Alu SINE Alu 220 280 -20 180 303 42 21 chr13 40405415 40405557 -61467612 + L2 LINE L2 2244 2388 -926 296 286 70 41 chr13 40406860 40407031 -61466138 + HAL1 LINE L1 1428 1603 -904 392 276 64 0 chr13 40407751 40407907 -61465262 - L1M4 LINE L1 -2055 4091 3926 1272 217 32 11 chr13 40408632 40408792 -61464377 - AluJo SINE Alu -29 283 128 483 33 0 0 chr13 40408792 40408853 -61464316 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1826 151 21 0 chr13 40408853 40409132 -61464037 - AluSx SINE Alu -27 285 1 1272 217 32 11 chr13 40409132 40409247 -61463922 - AluJo SINE Alu -183 129 1 21 0 0 0 chr13 40409312 40409333 -61463836 + AT_rich Low_complexity Low_complexity 1 21 0 1971 128 104 3 chr13 40409381 40409431 -61463738 - L1PA12 LINE L1 -180 5988 5939 829 258 119 21 chr13 40409431 40409768 -61463401 - L1MA4A LINE L1 -365 5938 5569 302 298 40 33 chr13 40409769 40409920 -61463249 - L1MA4A LINE L1 -758 5426 5275 405 214 34 39 chr13 40410643 40410804 -61462365 - L1M LINE L1 -736 5426 5275 574 141 20 0 chr13 40410915 40411014 -61462155 - AluY SINE Alu 0 311 211 1854 100 30 40 chr13 40412944 40413244 -61459925 + AluSc SINE Alu 1 297 -12 1836 182 10 55 chr13 40413318 40413719 -61459450 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 40414777 40414841 -61458328 + GA-rich Low_complexity Low_complexity 4 70 0 5835 11 0 0 chr13 40415610 40416266 -61456903 - L1HS LINE L1 0 6155 5500 3523 20 0 0 chr13 40416257 40416794 -61456375 + L1P1 LINE L1 4963 5499 -656 * 1928 152 7 3 chr13 40417581 40417883 -61455286 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 40418228 40418257 -61454912 + AT_rich Low_complexity Low_complexity 1 29 0 5053 146 24 8 chr13 40419008 40419886 -61453283 + L1PB4 LINE L1 5254 6145 -11 372 241 66 42 chr13 40419899 40420185 -61452984 + L1ME2 LINE L1 2750 3042 -3104 358 240 104 77 chr13 40420199 40420382 -61452787 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 40420408 40420582 -61452587 + GA-rich Low_complexity Low_complexity 4 180 0 1001 269 69 29 chr13 40420590 40421044 -61452125 + L1ME2 LINE L1 5668 6144 -20 1767 107 0 16 chr13 40421141 40421394 -61451775 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 40421406 40421449 -61451720 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 40421449 40421485 -61451684 + AT_rich Low_complexity Low_complexity 1 36 0 227 183 0 56 chr13 40423029 40423100 -61450069 - L1MCa LINE L1 -4365 2061 1995 222 191 0 0 chr13 40423118 40423165 -61450004 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 40423688 40423718 -61449451 + AT_rich Low_complexity Low_complexity 1 30 0 971 139 53 10 chr13 40423718 40423927 -61449242 - L1MA7 LINE L1 -3 6288 6071 30364 116 13 55 chr13 40425933 40432354 -61440815 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 40432551 40432573 -61440596 + AT_rich Low_complexity Low_complexity 1 22 0 752 172 18 29 chr13 40433236 40433421 -61439748 + L1MA8 LINE L1 5851 6044 -256 189 0 0 0 chr13 40434701 40434722 -61438447 + (A)n Simple_repeat Simple_repeat 1 21 0 1388 188 51 21 chr13 40435055 40435390 -61437779 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 40435614 40435636 -61437533 + AT_rich Low_complexity Low_complexity 1 22 0 305 304 48 8 chr13 40436961 40437086 -61436083 - L1MEc LINE L1 -4393 2003 1874 615 269 66 62 chr13 40437122 40437379 -61435790 - HERV16 LTR ERVL -3060 1936 1679 1784 204 67 12 chr13 40437846 40438248 -61434921 - MSTB LTR MaLR -2 424 1 2376 121 28 25 chr13 40438298 40438661 -61434508 + THE1B LTR MaLR 1 364 0 503 340 35 5 chr13 40438686 40438886 -61434283 + LTR16A LTR ERVL 230 435 -15 245 337 82 0 chr13 40439177 40439275 -61433894 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 40439593 40439628 -61433541 + (CA)n Simple_repeat Simple_repeat 2 36 0 905 127 28 9 chr13 40439636 40439958 -61433211 + (TAGA)n Simple_repeat Simple_repeat 3 329 0 3239 149 44 13 chr13 40440196 40440823 -61432346 + L1MC1 LINE L1 5576 6324 -9 775 230 14 37 chr13 40440866 40441083 -61432086 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 40441690 40441721 -61431448 + AT_rich Low_complexity Low_complexity 1 31 0 1161 224 97 3 chr13 40443051 40443413 -61429756 + L1MC3 LINE L1 7185 7580 -205 919 191 15 10 chr13 40443460 40443664 -61429505 + AluJo SINE Alu 1 205 -107 376 110 0 13 chr13 40443716 40443791 -61429378 + Alu SINE Alu 220 280 -20 180 303 42 21 chr13 40443917 40444059 -61429110 + L2 LINE L2 2244 2388 -926 191 318 28 78 chr13 40444425 40444642 -61428527 + L2 LINE L2 2883 3088 -184 708 276 6 73 chr13 40445771 40446086 -61427083 - HAL1 LINE L1 -823 1684 1391 420 282 37 9 chr13 40446099 40446315 -61426854 - HAL1 LINE L1 -1305 1202 981 369 282 43 25 chr13 40447665 40447828 -61425341 - L1M4 LINE L1 -2057 4089 3924 688 232 52 26 chr13 40448534 40448694 -61424475 - AluJo SINE Alu -29 283 116 252 86 0 0 chr13 40448694 40448729 -61424440 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 688 232 52 26 chr13 40448729 40448762 -61424407 - AluJo SINE Alu -196 116 85 1029 132 0 117 chr13 40448827 40449032 -61424137 + AluSq SINE Alu 116 296 -17 625 182 18 87 chr13 40449137 40449344 -61423825 + L1MC3 LINE L1 6801 6957 -828 2428 244 44 3 chr13 40449389 40449984 -61423185 + L1MC3 LINE L1 6962 7580 -205 922 191 15 10 chr13 40450031 40450235 -61422934 + AluJo SINE Alu 1 205 -107 403 115 0 0 chr13 40450287 40450348 -61422821 + AluS SINE Alu 220 280 -30 198 303 42 21 chr13 40450488 40450630 -61422539 + L2 LINE L2 2244 2388 -926 224 318 28 78 chr13 40450996 40451213 -61421956 + L2 LINE L2 2883 3088 -184 783 277 6 70 chr13 40452342 40452656 -61420513 - HAL1 LINE L1 -823 1684 1391 464 282 37 9 chr13 40452669 40452885 -61420284 - HAL1 LINE L1 -1305 1202 981 369 282 43 25 chr13 40454239 40454402 -61418767 - L1M4 LINE L1 -2057 4089 3924 688 232 52 26 chr13 40455108 40455268 -61417901 - AluJo SINE Alu -29 283 116 252 86 0 0 chr13 40455268 40455303 -61417866 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 688 232 52 26 chr13 40455303 40455336 -61417833 - AluJo SINE Alu -196 116 85 1029 132 0 117 chr13 40455401 40455606 -61417563 + AluSq SINE Alu 116 296 -17 625 178 15 86 chr13 40455714 40455918 -61417251 + L1MC3 LINE L1 6782 6957 -828 2428 244 44 3 chr13 40455963 40456558 -61416611 + L1MC3 LINE L1 6962 7580 -205 1141 166 22 122 chr13 40456605 40456925 -61416244 + AluJo SINE Alu 1 288 -14 783 277 6 70 chr13 40458449 40458763 -61414406 - HAL1 LINE L1 -823 1684 1391 416 292 37 9 chr13 40458776 40458992 -61414177 - HAL1 LINE L1 -1305 1202 981 369 282 43 25 chr13 40460343 40460506 -61412663 - L1M4 LINE L1 -2057 4089 3924 688 232 52 26 chr13 40461212 40461372 -61411797 - AluJo SINE Alu -29 283 116 252 86 0 0 chr13 40461372 40461407 -61411762 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 688 232 52 26 chr13 40461407 40461440 -61411729 - AluJo SINE Alu -196 116 85 1029 132 0 117 chr13 40461505 40461710 -61411459 + AluSq SINE Alu 116 296 -17 625 178 15 86 chr13 40461818 40462022 -61411147 + L1MC3 LINE L1 6782 6957 -828 2428 244 44 3 chr13 40462067 40462662 -61410507 + L1MC3 LINE L1 6962 7580 -205 969 177 10 100 chr13 40462709 40463019 -61410150 + AluJo SINE Alu 1 282 -30 198 303 42 21 chr13 40463159 40463301 -61409868 + L2 LINE L2 2244 2388 -926 321 289 69 40 chr13 40464602 40464775 -61408394 + HAL1 LINE L1 1426 1603 -904 383 274 78 6 chr13 40465495 40465674 -61407495 - L1M4 LINE L1 -2055 4091 3900 1215 214 32 25 chr13 40466376 40466540 -61406629 - AluJo SINE Alu -29 283 122 447 35 0 0 chr13 40466540 40466597 -61406572 + (TATG)n Simple_repeat Simple_repeat 2 58 0 1829 151 21 0 chr13 40466597 40466876 -61406293 - AluSx SINE Alu -27 285 1 1215 214 32 25 chr13 40466876 40466991 -61406178 - AluJo SINE Alu -189 123 1 21 0 0 0 chr13 40467056 40467077 -61406092 + AT_rich Low_complexity Low_complexity 1 21 0 1387 220 102 16 chr13 40467130 40467512 -61405657 - L1PB4 LINE L1 -173 5983 5569 439 222 34 35 chr13 40468387 40468560 -61404609 - L1M LINE L1 -736 5426 5260 2139 128 10 0 chr13 40468659 40468965 -61404204 - AluY SINE Alu 0 311 3 1931 173 0 0 chr13 40468971 40469283 -61403886 - AluSx SINE Alu 0 312 1 5384 201 73 32 chr13 40469334 40470560 -61402609 - MER52C LTR ERV1 0 1278 2 1582 144 0 4 chr13 40470583 40470819 -61402350 - MER52C-int LTR ERV1 -2 7089 6855 10391 137 31 21 chr13 40470830 40472487 -61400682 - MER52C-int LTR ERV1 -354 6737 5064 * 16400 145 8 5 chr13 40472483 40475513 -61397656 - MER52-int LTR ERV1 -3817 3274 152 231 274 0 0 chr13 40475517 40475568 -61397601 + CT-rich Low_complexity Low_complexity 1 51 0 897 237 16 5 chr13 40475656 40475846 -61397323 - MER58A DNA MER1_type -30 194 3 366 378 88 24 chr13 40475871 40476694 -61396475 + L2 LINE L2 2149 3017 -255 1059 184 17 0 chr13 40476963 40477142 -61396027 + AluJb SINE Alu 112 293 -19 29 47 0 0 chr13 40477221 40477264 -61395905 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr13 40477918 40477959 -61395210 + AT_rich Low_complexity Low_complexity 1 41 0 396 290 151 58 chr13 40479017 40479362 -61393807 - L2 LINE L2 -3 3310 2934 202 194 32 0 chr13 40479372 40479434 -61393735 + (TTA)n Simple_repeat Simple_repeat 2 65 0 189 250 18 54 chr13 40479719 40479775 -61393394 - L2 LINE L2 -559 2755 2702 21 36 0 0 chr13 40480047 40480075 -61393094 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 40482023 40482045 -61391124 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 40482483 40482506 -61390663 + AT_rich Low_complexity Low_complexity 1 23 0 184 286 107 0 chr13 40483144 40483228 -61389941 + MIR SINE MIR 104 196 -66 537 288 135 27 chr13 40483391 40483953 -61389216 + MER20B DNA MER1_type 85 707 -76 997 271 103 58 chr13 40483961 40484408 -61388761 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chr13 40484496 40484522 -61388647 + AT_rich Low_complexity Low_complexity 1 26 0 14042 190 55 12 chr13 40484566 40489518 -61383651 - L1MA3 LINE L1 -336 7388 2221 5102 193 44 18 chr13 40489539 40490530 -61382639 - L1MA3 LINE L1 -6536 1029 13 21 0 0 0 chr13 40491011 40491032 -61382137 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 40492299 40492325 -61380844 + AT_rich Low_complexity Low_complexity 1 26 0 234 255 82 125 chr13 40492339 40492378 -61380791 - MIR SINE MIR -42 220 181 686 233 59 78 chr13 40492378 40492597 -61380572 + MER20 DNA MER1_type 1 215 -4 234 255 82 125 chr13 40492597 40492741 -61380428 - MIR SINE MIR -81 181 45 876 281 51 92 chr13 40492800 40493365 -61379804 + MLT1F LTR MaLR 1 542 0 182 268 24 0 chr13 40494094 40494135 -61379034 + L2 LINE L2 3220 3261 -11 330 167 24 12 chr13 40494218 40494302 -61378867 + L1MA4 LINE L1 6036 6120 -180 * 429 208 10 30 chr13 40494299 40494400 -61378769 + L1MA4A LINE L1 6182 6280 -23 272 306 67 50 chr13 40494486 40494666 -61378503 - L2 LINE L2 -8 3305 3123 2900 3 0 0 chr13 40495932 40496240 -61376929 - AluY SINE Alu -3 308 1 21 0 0 0 chr13 40496827 40496848 -61376321 + AT_rich Low_complexity Low_complexity 1 21 0 187 302 54 54 chr13 40497019 40497148 -61376021 - L2 LINE L2 -327 2945 2817 201 373 102 23 chr13 40497423 40497600 -61375569 - L2 LINE L2 -832 2482 2292 194 304 35 61 chr13 40498221 40498336 -61374833 + MER5B DNA MER1_type 7 118 -60 26 30 0 0 chr13 40498454 40498487 -61374682 + AT_rich Low_complexity Low_complexity 1 33 0 2233 114 3 3 chr13 40498832 40499139 -61374030 + AluSg SINE Alu 1 307 -3 245 204 20 0 chr13 40499372 40499421 -61373748 + MIR SINE MIR 95 144 -64 602 25 0 25 chr13 40499669 40499748 -61373421 - L1PA8 LINE L1 -5 6167 6091 281 212 182 0 chr13 40500361 40500427 -61372742 - L2 LINE L2 -1 3312 3235 30 0 0 0 chr13 40500536 40500566 -61372603 + AT_rich Low_complexity Low_complexity 1 30 0 275 0 0 28 chr13 40501230 40501266 -61371903 + (CA)n Simple_repeat Simple_repeat 2 36 0 307 235 71 20 chr13 40501669 40501767 -61371402 + L1MC4 LINE L1 6601 6703 -1339 543 16 0 0 chr13 40501836 40501900 -61371269 + (TC)n Simple_repeat Simple_repeat 2 65 0 207 0 0 0 chr13 40501899 40501922 -61371247 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 278 354 92 35 chr13 40502081 40502341 -61370828 + L3 LINE CR1 1203 1477 -100 2350 20 0 0 chr13 40502548 40502841 -61370328 - L1P LINE L1 -2866 3280 2988 25 31 0 0 chr13 40502949 40502981 -61370188 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 40503727 40503755 -61369414 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr13 40503804 40503852 -61369317 + AT_rich Low_complexity Low_complexity 1 48 0 1141 169 54 14 chr13 40504008 40504287 -61368882 + L1MA7 LINE L1 5639 5938 -230 1936 186 12 7 chr13 40504326 40504730 -61368439 + L1MA6 LINE L1 5894 6299 -1 1823 100 30 40 chr13 40507014 40507315 -61365854 + AluSc SINE Alu 1 298 -11 1819 187 8 52 chr13 40507389 40507790 -61365379 + MLT1B LTR MaLR 8 390 0 214 172 62 16 chr13 40508848 40508912 -61364257 + GA-rich Low_complexity Low_complexity 4 70 0 5812 11 0 0 chr13 40509680 40510336 -61362833 - L1HS LINE L1 0 6155 5500 3522 20 0 0 chr13 40510327 40510864 -61362305 + L1P1 LINE L1 4963 5499 -656 * 1918 149 7 3 chr13 40511654 40511956 -61361213 + AluSx SINE Alu 1 303 -9 29 0 0 0 chr13 40512301 40512330 -61360839 + AT_rich Low_complexity Low_complexity 1 29 0 5094 146 23 9 chr13 40513081 40513961 -61359208 + L1PB4 LINE L1 5254 6276 -22 392 241 75 41 chr13 40513964 40514258 -61358911 + L1ME2 LINE L1 2739 3042 -3104 373 240 104 77 chr13 40514272 40514455 -61358714 + L1ME2 LINE L1 5477 5664 -500 404 241 23 6 chr13 40514481 40514655 -61358514 + GA-rich Low_complexity Low_complexity 4 180 0 1044 274 65 25 chr13 40514663 40515117 -61358052 + L1ME2 LINE L1 5668 6144 -20 1734 107 0 16 chr13 40515214 40515467 -61357702 + AluSx SINE Alu 1 249 -63 186 209 0 0 chr13 40515479 40515522 -61357647 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 22 56 0 0 chr13 40515522 40515558 -61357611 + AT_rich Low_complexity Low_complexity 1 36 0 232 192 0 55 chr13 40517100 40517173 -61355996 - L1MCa LINE L1 -4363 2063 1995 222 191 0 0 chr13 40517191 40517238 -61355931 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr13 40517761 40517791 -61355378 + AT_rich Low_complexity Low_complexity 1 30 0 986 139 53 10 chr13 40517791 40518000 -61355169 - L1MA7 LINE L1 -3 6288 6071 30440 117 13 54 chr13 40520005 40526416 -61346753 + L1PA7 LINE L1 12 6150 -4 22 0 0 0 chr13 40526613 40526635 -61346534 + AT_rich Low_complexity Low_complexity 1 22 0 757 172 18 29 chr13 40527298 40527483 -61345686 + L1MA8 LINE L1 5851 6044 -256 23 0 0 0 chr13 40528760 40528783 -61344386 + AT_rich Low_complexity Low_complexity 1 23 0 1412 188 51 21 chr13 40529112 40529447 -61343722 - L1MA8 LINE L1 -4 6287 5943 22 0 0 0 chr13 40529671 40529693 -61343476 + AT_rich Low_complexity Low_complexity 1 22 0 625 269 66 59 chr13 40531200 40531456 -61341713 - HERV16 LTR ERVL -3060 1936 1679 1795 201 67 12 chr13 40531923 40532325 -61340844 - MSTB LTR MaLR -2 424 1 2365 124 28 25 chr13 40532375 40532738 -61340431 + THE1B LTR MaLR 1 364 0 500 340 35 5 chr13 40532763 40532963 -61340206 + LTR16A LTR ERVL 230 435 -15 252 337 82 0 chr13 40533254 40533352 -61339817 + MIR SINE MIR 107 212 -50 198 143 0 0 chr13 40533670 40533705 -61339464 + (CA)n Simple_repeat Simple_repeat 2 36 0 887 116 28 16 chr13 40533713 40534031 -61339138 + (TAGA)n Simple_repeat Simple_repeat 3 323 0 3241 151 44 13 chr13 40534269 40534896 -61338273 + L1MC1 LINE L1 5576 6324 -9 775 230 14 37 chr13 40534939 40535156 -61338013 - MER58C DNA MER1_type 0 215 4 24 32 0 0 chr13 40535763 40535794 -61337375 + AT_rich Low_complexity Low_complexity 1 31 0 1863 170 28 35 chr13 40537725 40538124 -61335045 + L1MA6 LINE L1 5905 6300 0 250 247 52 31 chr13 40538885 40538982 -61334187 - L1ME3A LINE L1 -229 5941 5843 43 0 0 0 chr13 40538985 40539028 -61334141 + AT_rich Low_complexity Low_complexity 1 43 0 243 291 43 21 chr13 40539159 40539300 -61333869 - HAL1 LINE L1 -757 1750 1607 4715 173 8 33 chr13 40539305 40540621 -61332548 + L1PB4 LINE L1 4864 6154 -2 505 282 141 44 chr13 40540630 40541113 -61332056 - HAL1 LINE L1 -917 1590 1012 213 65 0 0 chr13 40541113 40541144 -61332025 + (TTG)n Simple_repeat Simple_repeat 2 32 0 505 282 141 44 chr13 40541144 40541383 -61331786 - HAL1 LINE L1 -1495 1012 798 22 56 0 0 chr13 40542378 40542414 -61330755 + AT_rich Low_complexity Low_complexity 1 36 0 446 322 109 17 chr13 40544320 40544559 -61328610 - MIR SINE MIR 0 262 2 455 189 0 0 chr13 40545873 40545947 -61327222 + AluS SINE Alu 1 74 -239 1370 80 0 0 chr13 40547465 40547640 -61325529 + AluSp SINE Alu 139 313 0 484 255 42 50 chr13 40598186 40598425 -61274744 - L1MC5 LINE L1 -437 7371 7249 236 337 50 0 chr13 40599005 40599106 -61274063 - L2 LINE L2 -12 3301 3196 21 0 0 0 chr13 40599419 40599440 -61273729 + AT_rich Low_complexity Low_complexity 1 21 0 288 250 193 0 chr13 40600427 40600515 -61272654 - L2 LINE L2 -8 3264 3160 797 241 49 83 chr13 40601519 40601905 -61271264 - MLT1A2 LTR MaLR 0 374 2 25 90 0 0 chr13 40602002 40602069 -61271100 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr13 40603310 40603333 -61269836 + AT_rich Low_complexity Low_complexity 1 23 0 34 84 0 0 chr13 40604586 40604669 -61268500 + AT_rich Low_complexity Low_complexity 1 83 0 225 94 0 0 chr13 40604716 40604748 -61268421 + (TATAA)n Simple_repeat Simple_repeat 1 32 0 30 45 0 0 chr13 40604994 40605038 -61268131 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr13 40605423 40605455 -61267714 + AT_rich Low_complexity Low_complexity 1 32 0 1990 117 0 4 chr13 40605524 40605825 -61267344 + AluSc SINE Alu 3 302 0 21 0 0 0 chr13 40606004 40606025 -61267144 + AT_rich Low_complexity Low_complexity 1 21 0 189 188 0 43 chr13 40606470 40606539 -61266630 + CT-rich Low_complexity Low_complexity 3 68 0 28 0 0 0 chr13 40606838 40606866 -61266303 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr13 40608009 40608044 -61265125 + AT_rich Low_complexity Low_complexity 1 35 0 1240 241 68 85 chr13 40608059 40608948 -61264221 + LTR28 LTR ERV1 1 1020 0 195 129 0 0 chr13 40609153 40609184 -61263985 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1498 110 0 5 chr13 40609284 40609493 -61263676 + AluSg/x SINE Alu 91 298 -12 282 229 0 0 chr13 40609524 40609594 -61263575 + (CATA)n Simple_repeat Simple_repeat 3 72 0 352 338 80 44 chr13 40610028 40610253 -61262916 + L1MEd LINE L1 840 1072 -5300 431 298 129 44 chr13 40610468 40610854 -61262315 + L1MEd LINE L1 1452 1870 -4693 404 301 99 62 chr13 40611042 40611598 -61261571 + L1MEd LINE L1 2129 2709 -3673 216 0 0 0 chr13 40611605 40611629 -61261540 + (T)n Simple_repeat Simple_repeat 1 24 0 280 326 7 7 chr13 40611808 40611943 -61261226 + L1MEd LINE L1 2903 3037 -3345 252 0 0 0 chr13 40612881 40612909 -61260260 + (T)n Simple_repeat Simple_repeat 1 28 0 1447 101 25 0 chr13 40612947 40613180 -61259989 - AluSg/x SINE Alu 0 316 79 1759 149 0 11 chr13 40613496 40613765 -61259404 - AluSq SINE Alu -47 266 1 24 24 0 24 chr13 40613811 40613827 -61259342 + AT_rich Low_complexity Low_complexity 1 16 -25 5996 103 22 3 chr13 40613827 40615451 -61257718 + L1PA11 LINE L1 4522 6163 -11 24 24 0 24 chr13 40615451 40615476 -61257693 + AT_rich Low_complexity Low_complexity 16 41 0 189 171 0 0 chr13 40616112 40616147 -61257022 + (CA)n Simple_repeat Simple_repeat 2 36 0 1192 195 7 39 chr13 40616714 40617021 -61256148 + L1MA7 LINE L1 5972 6268 -23 22 0 0 0 chr13 40617319 40617341 -61255828 + AT_rich Low_complexity Low_complexity 1 22 0 196 391 70 37 chr13 40618386 40618629 -61254540 - L3 LINE CR1 -1151 426 176 493 290 0 0 chr13 40618722 40618853 -61254316 - FLAM_C SINE Alu -1 132 2 340 292 21 0 chr13 40618907 40619003 -61254166 - MIR SINE MIR -124 138 41 358 187 77 22 chr13 40619279 40619370 -61253799 - MER53 DNA DNA -93 96 1 32 67 0 0 chr13 40619463 40619523 -61253646 + AT_rich Low_complexity Low_complexity 1 60 0 311 289 31 0 chr13 40619571 40619668 -61253501 - L1MC3 LINE L1 -1116 6669 6570 30 59 0 0 chr13 40620184 40620235 -61252934 + AT_rich Low_complexity Low_complexity 1 51 0 541 276 151 53 chr13 40620295 40620883 -61252286 + HAL1 LINE L1 1532 2177 -330 22 0 0 0 chr13 40621020 40621042 -61252127 + AT_rich Low_complexity Low_complexity 1 22 0 1945 157 12 0 chr13 40621136 40621479 -61251690 - L1PB4 LINE L1 0 6156 5810 296 29 0 0 chr13 40621611 40621645 -61251524 + (TG)n Simple_repeat Simple_repeat 2 35 0 279 272 0 0 chr13 40621645 40621737 -61251432 + (TA)n Simple_repeat Simple_repeat 2 93 0 1776 219 42 7 chr13 40621755 40622127 -61251042 + L1 LINE L1 4409 4799 -1347 1864 142 0 0 chr13 40622127 40622395 -61250774 + AluSx SINE Alu 37 304 -8 1776 219 42 7 chr13 40622395 40622451 -61250718 + L1 LINE L1 4799 4852 -1294 198 0 0 0 chr13 40623870 40623892 -61249277 + (A)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr13 40624468 40624497 -61248672 + AT_rich Low_complexity Low_complexity 1 29 0 224 404 80 4 chr13 40625533 40625758 -61247411 + MIR SINE MIR 21 262 0 2808 16 0 0 chr13 40626076 40626394 -61246775 - AluYb8 SINE Alu 0 318 1 7796 19 0 0 chr13 40627074 40628084 -61245085 - L1PA3 LINE L1 0 6155 5146 939 147 68 0 chr13 40628395 40628585 -61244584 - L1MA9 LINE L1 -5 6307 6105 257 187 13 0 chr13 40628630 40628705 -61244464 + CT-rich Low_complexity Low_complexity 1 76 0 23 0 0 0 chr13 40630254 40630277 -61242892 + AT_rich Low_complexity Low_complexity 1 23 0 938 332 55 23 chr13 40630927 40631400 -61241769 - L2 LINE L2 -5 3308 2821 307 309 37 15 chr13 40631398 40631534 -61241635 - L2 LINE L2 -863 2451 2313 * 284 190 0 0 chr13 40631945 40632003 -61241166 - L1MA1 LINE L1 -104 6198 6141 230 194 16 0 chr13 40632129 40632191 -61240978 + (TA)n Simple_repeat Simple_repeat 2 64 0 3722 114 4 5 chr13 40632206 40632914 -61240255 - L1M1 LINE L1 -513 5789 5082 466 266 130 45 chr13 40633094 40633402 -61239767 - L1ME3A LINE L1 -182 5988 5655 24 0 0 0 chr13 40633829 40633853 -61239316 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr13 40633873 40633922 -61239247 + AT_rich Low_complexity Low_complexity 1 49 0 346 88 16 83 chr13 40633922 40634115 -61239054 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 251 340 119 37 chr13 40634334 40634432 -61238737 + L2 LINE L2 2109 2198 -1116 429 36 0 0 chr13 40634432 40634487 -61238682 + (TC)n Simple_repeat Simple_repeat 2 56 0 251 340 119 37 chr13 40634487 40634632 -61238537 + L2 LINE L2 2198 2372 -942 186 377 35 26 chr13 40635489 40635603 -61237566 - L2 LINE L2 -253 3019 2905 1301 159 60 8 chr13 40635644 40635895 -61237274 + MER21A LTR ERV1 1 264 -667 2527 197 77 13 chr13 40635901 40636423 -61236746 + MER21A LTR ERV1 377 931 0 225 397 65 32 chr13 40636820 40637324 -61235845 - L2 LINE L2 -904 2410 1890 800 186 39 10 chr13 40637352 40637555 -61235614 + L1M2 LINE L1 5570 5779 -395 257 351 79 26 chr13 40637713 40637827 -61235342 + L2 LINE L2 3136 3255 -17 5090 185 35 20 chr13 40637901 40638378 -61234791 + L1MA6 LINE L1 4823 5291 -1009 411 21 0 0 chr13 40638378 40638426 -61234743 + (CAT)n Simple_repeat Simple_repeat 2 49 0 5090 185 35 20 chr13 40638426 40639410 -61233759 + L1MA6 LINE L1 5291 6295 -5 23 33 0 0 chr13 40639880 40639910 -61233259 + AT_rich Low_complexity Low_complexity 1 30 0 1388 198 41 4 chr13 40640894 40641162 -61232007 - AluJb SINE Alu -30 282 5 259 287 35 35 chr13 40641885 40641972 -61231197 - L2 LINE L2 -7 3306 3220 964 196 22 6 chr13 40642033 40642212 -61230957 + MER5A DNA MER1_type 1 182 -7 2273 207 26 91 chr13 40642636 40643375 -61229794 + LTR8 LTR ERV1 1 691 0 1886 188 21 8 chr13 40643433 40643817 -61229352 + L1PA16 LINE L1 5769 6157 -9 39 22 0 0 chr13 40643817 40643863 -61229306 + AT_rich Low_complexity Low_complexity 1 46 0 290 235 121 23 chr13 40643917 40644049 -61229120 + L1ME3A LINE L1 5398 5542 -620 1397 254 26 20 chr13 40644130 40644472 -61228697 + Tigger7 DNA MER2_type 1 344 -2143 738 159 58 14 chr13 40644467 40644605 -61228564 + Tigger7 DNA MER2_type 2339 2482 -5 * 377 317 17 0 chr13 40644610 40644730 -61228439 + L1ME3A LINE L1 5630 5751 -419 221 119 24 0 chr13 40644761 40644803 -61228366 + (TGGA)n Simple_repeat Simple_repeat 2 44 0 2055 191 84 71 chr13 40644803 40645336 -61227833 - MLT2B3 LTR ERVL -19 515 1 1125 292 44 12 chr13 40645336 40645622 -61227547 + L1ME3A LINE L1 5748 6052 -118 3022 166 38 7 chr13 40645622 40646196 -61226973 + LTR49 LTR ERV1 1 592 -3 1125 292 44 12 chr13 40646196 40646317 -61226852 + L1ME3A LINE L1 6052 6168 -2 24 67 0 0 chr13 40646431 40646476 -61226693 + AT_rich Low_complexity Low_complexity 1 45 0 832 240 34 10 chr13 40646569 40646773 -61226396 - MER20 DNA MER1_type 0 219 11 703 322 130 28 chr13 40646865 40647325 -61225844 - L2 LINE L2 0 3313 2807 226 300 152 46 chr13 40647931 40648194 -61224975 + L2 LINE L2 2949 3239 -74 264 236 56 0 chr13 40648537 40648609 -61224560 - LTR50 LTR ERVL -8 787 712 272 250 70 10 chr13 40648738 40648838 -61224331 - LTR50 LTR ERVL -194 601 496 327 294 147 38 chr13 40648886 40649070 -61224099 - LTR50 LTR ERVL -510 285 82 345 323 16 57 chr13 40649164 40649288 -61223881 - L2 LINE L2 -2 3311 3193 247 190 0 86 chr13 40649434 40649492 -61223677 + MER20 DNA MER1_type 1 53 -166 824 272 82 0 chr13 40649496 40649702 -61223467 + MER58A DNA MER1_type 1 223 -1 198 0 0 0 chr13 40649764 40649786 -61223383 + (TATG)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr13 40650564 40650592 -61222577 + AT_rich Low_complexity Low_complexity 1 28 0 1580 208 34 14 chr13 40651215 40651571 -61221598 + MLT1A1 LTR MaLR 1 363 -2 332 32 65 0 chr13 40652193 40652255 -61220914 + (TA)n Simple_repeat Simple_repeat 2 67 0 299 43 0 43 chr13 40652403 40652449 -61220720 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 470 174 0 51 chr13 40652451 40652549 -61220620 + L1MC2 LINE L1 5489 5581 -763 820 194 15 35 chr13 40652558 40652759 -61220410 - L1MD2 LINE L1 0 6359 6163 4361 27 4 0 chr13 40652985 40653504 -61219665 - L1PA3 LINE L1 0 6155 5635 3538 14 0 2 chr13 40653604 40654022 -61219147 - L1P1 LINE L1 -485 5670 5254 21591 30 3 0 chr13 40654036 40656655 -61216514 + L1P LINE L1 2585 5210 -936 2975 208 80 7 chr13 40656657 40657346 -61215823 + L1MC2 LINE L1 5585 6323 -21 195 250 23 0 chr13 40657928 40657972 -61215197 - L2 LINE L2 -2 3270 3226 273 203 31 16 chr13 40657993 40658057 -61215112 + GA-rich Low_complexity Low_complexity 1 65 0 2453 114 5 39 chr13 40658698 40658747 -61214422 + L1PB2 LINE L1 5753 5802 -349 414 69 0 0 chr13 40658747 40658805 -61214364 + (CA)n Simple_repeat Simple_repeat 2 59 0 2453 114 5 39 chr13 40658805 40659166 -61214003 + L1PB2 LINE L1 5802 6149 -2 197 391 65 0 chr13 40659722 40659860 -61213309 + L2 LINE L2 3117 3263 -9 21 36 0 0 chr13 40660518 40660546 -61212623 + AT_rich Low_complexity Low_complexity 1 28 0 182 150 25 0 chr13 40661229 40661269 -61211900 + (TTA)n Simple_repeat Simple_repeat 1 41 0 215 355 0 0 chr13 40663846 40663922 -61209247 + (ATGGTG)n Simple_repeat Simple_repeat 5 80 0 22 0 0 0 chr13 40664197 40664219 -61208950 + AT_rich Low_complexity Low_complexity 1 22 0 38 0 0 0 chr13 40664278 40664316 -61208853 + AT_rich Low_complexity Low_complexity 1 38 0 523 319 119 13 chr13 40664717 40664943 -61208226 + MIR SINE MIR 8 257 -5 27 73 0 0 chr13 40665129 40665184 -61207985 + AT_rich Low_complexity Low_complexity 1 55 0 24 53 0 0 chr13 40665796 40665834 -61207335 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 40666012 40666041 -61207128 + AT_rich Low_complexity Low_complexity 1 29 0 1077 205 102 7 chr13 40666332 40666690 -61206479 - L1M2 LINE L1 -743 5403 5072 2229 172 86 15 chr13 40666692 40667169 -61206000 + L1MA7 LINE L1 5779 6289 -2 374 200 0 12 chr13 40667191 40667271 -61205898 - MIR SINE MIR -19 243 165 492 266 116 17 chr13 40667371 40667544 -61205625 - MLT1J1 LTR MaLR -120 326 137 396 196 38 89 chr13 40667812 40667970 -61205199 - L1MC3 LINE L1 0 7785 7636 213 132 0 0 chr13 40669101 40669139 -61204030 + (TC)n Simple_repeat Simple_repeat 1 38 0 22 35 0 0 chr13 40669351 40669380 -61203789 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 40669412 40669434 -61203735 + AT_rich Low_complexity Low_complexity 1 22 0 1410 139 0 103 chr13 40670904 40671185 -61201984 - AluJo SINE Alu -49 263 12 2476 250 64 21 chr13 40671382 40672159 -61201010 + Charlie1a DNA MER1_type 1 811 -644 322 280 19 13 chr13 40672147 40672304 -61200865 + Charlie1a DNA MER1_type 1297 1454 -1 * 509 345 67 69 chr13 40673427 40673920 -61199249 + MLT1K LTR MaLR 16 507 -81 341 241 9 0 chr13 40673923 40674035 -61199134 + (TA)n Simple_repeat Simple_repeat 2 114 0 2612 231 13 7 chr13 40675072 40675690 -61197479 - L1MB5 LINE L1 -1 6173 5552 2127 125 22 52 chr13 40675694 40676004 -61197165 + THE1B LTR MaLR 9 327 -37 2029 112 4 0 chr13 40676004 40676282 -61196887 + AluSx SINE Alu 1 279 -33 309 26 0 0 chr13 40676288 40676326 -61196843 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2127 125 22 52 chr13 40676326 40676375 -61196794 + THE1B LTR MaLR 332 364 0 6376 265 73 31 chr13 40676375 40677467 -61195702 - L1MB5 LINE L1 -633 5541 4497 183 42 0 0 chr13 40677467 40677491 -61195678 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6376 265 73 31 chr13 40677491 40679493 -61193676 - L1MB5 LINE L1 -1677 4497 2312 236 229 49 78 chr13 40679492 40679736 -61193433 + L1MEc LINE L1 2030 2266 -4130 * 225 180 74 8 chr13 40679763 40679885 -61193284 + (TA)n Simple_repeat Simple_repeat 2 131 0 778 230 36 0 chr13 40680042 40680207 -61192962 + MLT1A2 LTR MaLR 204 374 0 357 269 84 31 chr13 40680207 40680434 -61192735 + L1MEc LINE L1 3871 4109 -2106 1570 194 22 36 chr13 40680440 40680800 -61192369 + MLT2C1 LTR ERVL 3 357 -40 291 28 0 0 chr13 40680813 40680849 -61192320 + (TG)n Simple_repeat Simple_repeat 1 36 0 368 294 41 35 chr13 40680921 40681091 -61192078 + L1MEc LINE L1 4129 4299 -1916 818 189 156 4 chr13 40681133 40681376 -61191793 - MER33 DNA MER1_type -44 280 1 493 157 0 0 chr13 40682360 40682449 -61190720 - L1MA3 LINE L1 0 6305 6217 302 224 0 15 chr13 40682644 40682697 -61190472 - L1MC4 LINE L1 -1339 6703 6650 2051 110 0 50 chr13 40682697 40682998 -61190171 - AluSp SINE Alu -27 286 1 302 224 0 15 chr13 40682998 40683011 -61190158 - L1MC4 LINE L1 -1392 6650 6638 563 29 69 0 chr13 40683020 40683122 -61190047 + (TA)n Simple_repeat Simple_repeat 2 110 0 21 36 0 0 chr13 40683219 40683247 -61189922 + AT_rich Low_complexity Low_complexity 1 28 0 971 224 78 20 chr13 40684096 40684454 -61188715 - Charlie1b DNA MER1_type -3 520 142 24 0 0 0 chr13 40685147 40685171 -61187998 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr13 40685326 40685361 -61187808 + AT_rich Low_complexity Low_complexity 1 35 0 1244 201 188 20 chr13 40687359 40687703 -61185466 - MSTC LTR MaLR 0 365 1 23 0 0 0 chr13 40689185 40689208 -61183961 + AT_rich Low_complexity Low_complexity 1 23 0 205 344 51 56 chr13 40689726 40689921 -61183248 + L2 LINE L2 2607 2800 -514 182 159 175 63 chr13 40690260 40690323 -61182846 + L2 LINE L2 466 535 -2779 2334 32 0 7 chr13 40690456 40690773 -61182396 + AluY SINE Alu 1 315 0 21 0 0 0 chr13 40690773 40690794 -61182375 + AT_rich Low_complexity Low_complexity 1 21 0 545 330 62 17 chr13 40690802 40691090 -61182079 + L2 LINE L2 714 1014 -2300 494 302 73 101 chr13 40691123 40691619 -61181550 + L2 LINE L2 2832 3313 0 2501 318 74 48 chr13 40691769 40693211 -61179958 + L2 LINE L2 1208 2686 -628 2200 266 64 26 chr13 40693229 40693786 -61179383 - L1ME2 LINE L1 -19 6214 5611 772 69 0 0 chr13 40693786 40693887 -61179282 - L1PA8 LINE L1 -2 6170 6070 2200 266 64 26 chr13 40693887 40694167 -61179002 - L1ME2 LINE L1 -622 5611 5343 279 247 25 0 chr13 40694191 40694272 -61178897 - L1ME2 LINE L1 -1049 5166 5084 1097 288 95 37 chr13 40694428 40694523 -61178646 - L1ME2 LINE L1 -1198 5017 4929 1317 249 42 42 chr13 40694523 40695028 -61178141 - MLT1D LTR MaLR 0 505 1 1097 288 95 37 chr13 40695028 40695657 -61177512 - L1ME2 LINE L1 -1286 4929 4251 * 4571 195 39 36 chr13 40695653 40696958 -61176211 - L1MA10 LINE L1 0 6334 5023 879 214 6 0 chr13 40697009 40697187 -61175982 + L1 LINE L1 4832 5010 -1136 735 308 37 48 chr13 40697299 40697727 -61175442 - L1ME2 LINE L1 -4488 1793 1402 2288 116 3 0 chr13 40697727 40698038 -61175131 - AluSx SINE Alu 0 312 1 735 308 37 48 chr13 40698038 40698167 -61175002 - L1ME2 LINE L1 -4879 1402 1273 2857 3 0 0 chr13 40698840 40699179 -61173990 - AluYa5 SINE Alu 0 339 1 2051 152 0 0 chr13 40699682 40699979 -61173190 + AluSx SINE Alu 1 297 -15 21 36 0 0 chr13 40700644 40700672 -61172497 + AT_rich Low_complexity Low_complexity 1 28 0 572 230 0 24 chr13 40701118 40701244 -61171925 + FLAM_A SINE Alu 1 123 -10 279 0 0 0 chr13 40702384 40702415 -61170754 + (TG)n Simple_repeat Simple_repeat 2 32 0 604 129 7 114 chr13 40702745 40702885 -61170284 + LTR7 LTR ERV1 1 125 -325 872 193 64 20 chr13 40703062 40703264 -61169905 + LTR7 LTR ERV1 238 448 -2 2459 59 0 13 chr13 40703928 40704231 -61168938 - AluY SINE Alu -12 299 1 22 0 0 0 chr13 40704356 40704378 -61168791 + AT_rich Low_complexity Low_complexity 1 22 0 1748 194 53 31 chr13 40704789 40705332 -61167837 + MLT2A2 LTR ERVL 1 554 0 11985 184 49 18 chr13 40706510 40708501 -61164668 + L1M1 LINE L1 14 2832 -4733 5814 19 0 0 chr13 40708501 40709168 -61164001 + L1PA3 LINE L1 5489 6155 0 11985 184 49 18 chr13 40709168 40710214 -61162955 + L1M1 LINE L1 2832 3843 -3722 7935 183 17 7 chr13 40710210 40712202 -61160967 + L1M1 LINE L1 5091 7105 -616 * 253 157 0 0 chr13 40712196 40712247 -61160922 + L1MA3 LINE L1 6249 6299 -6 * 860 273 38 64 chr13 40714526 40715025 -61158144 - HAL1 LINE L1 -757 1750 1265 31 0 0 0 chr13 40715056 40715087 -61158082 + AT_rich Low_complexity Low_complexity 1 31 0 300 307 90 69 chr13 40715290 40715622 -61157547 - HAL1 LINE L1 -1640 867 529 248 259 52 111 chr13 40715852 40716122 -61157047 - HAL1 LINE L1 -2154 353 100 1953 128 7 0 chr13 40716638 40716964 -61156205 - AluSq SINE Alu 0 328 1 255 339 37 0 chr13 40717055 40717164 -61156005 + L2 LINE L2 2595 2707 -607 768 280 18 0 chr13 40717264 40717432 -61155737 + MER45A DNA AcHobo 8 178 0 337 295 11 0 chr13 40717436 40717531 -61155638 + MIR SINE MIR 161 256 -6 206 174 0 22 chr13 40717538 40717584 -61155585 + (TTA)n Simple_repeat Simple_repeat 1 45 0 522 319 37 11 chr13 40718729 40718921 -61154248 + MIR SINE MIR 34 228 -34 29 84 0 0 chr13 40719526 40719597 -61153572 + AT_rich Low_complexity Low_complexity 1 71 0 1013 82 0 15 chr13 40719865 40720000 -61153169 + AluY SINE Alu 1 133 -178 2268 66 0 7 chr13 40720818 40721107 -61152062 - AluY SINE Alu -11 300 14 597 200 0 0 chr13 40721912 40722022 -61151147 - FLAM_A SINE Alu -9 133 24 2501 51 0 0 chr13 40722250 40722545 -61150624 + AluY SINE Alu 1 295 -16 957 223 33 0 chr13 40722744 40722928 -61150241 + L1PA16 LINE L1 13 202 -6647 * 12388 217 30 13 chr13 40722926 40725310 -61147859 + L1PA16 LINE L1 958 3298 -3579 7129 153 17 1 chr13 40725310 40727294 -61145875 + L1PA10 LINE L1 4150 6156 -12 12388 217 30 13 chr13 40727294 40730759 -61142410 + L1PA16 LINE L1 3298 6877 0 1348 176 33 9 chr13 40730966 40731301 -61141868 + Tigger4(Zombi) DNA MER2_type 1 2729 -2 1508 201 0 33 chr13 40731437 40731741 -61141428 + AluJb SINE Alu 1 294 -18 1191 123 10 15 chr13 40731920 40732124 -61141045 - L1PB2 LINE L1 0 6151 5949 4105 201 6 3 chr13 40732124 40732992 -61140177 - L1 LINE L1 -3167 2979 2110 6629 142 32 11 chr13 40732997 40734227 -61138942 - L1PBa LINE L1 -4094 2769 1513 3207 101 30 4 chr13 40734232 40734707 -61138462 - LTR15 LTR ERV1 -6 487 1 899 225 106 19 chr13 40734707 40735873 -61137296 - L1PBa LINE L1 -5346 1517 105 28 29 0 0 chr13 40736038 40736073 -61137096 + AT_rich Low_complexity Low_complexity 1 35 0 1603 132 8 4 chr13 40737169 40737411 -61135758 + AluSq SINE Alu 41 283 -30 360 59 0 0 chr13 40737414 40737465 -61135704 + (CATA)n Simple_repeat Simple_repeat 2 52 0 3282 89 13 0 chr13 40737590 40738037 -61135132 + MLT2A2 LTR ERVL 1 453 0 315 329 103 14 chr13 40738372 40738518 -61134651 - MIR SINE MIR -29 233 75 1919 126 149 25 chr13 40738636 40738992 -61134177 - Tigger2 DNA MER2_type -38 2680 2281 358 200 0 0 chr13 40738996 40739061 -61134108 + MER8 DNA MER2_type 175 239 0 * 565 250 125 18 chr13 40739061 40739284 -61133885 + MER2 DNA MER2_type 97 343 -2 761 198 94 68 chr13 40739390 40739698 -61133471 + MER33 DNA MER1_type 5 320 -4 2243 104 0 3 chr13 40739952 40740259 -61132910 - AluSc SINE Alu -3 306 1 21 0 0 0 chr13 40740501 40740522 -61132647 + AT_rich Low_complexity Low_complexity 1 21 0 403 218 102 80 chr13 40741689 40741914 -61131255 - L1MC5 LINE L1 -424 7537 7308 344 294 0 0 chr13 40742354 40742446 -61130723 - L2 LINE L2 -6 3307 3216 661 49 0 39 chr13 40742580 40742682 -61130487 - AluY SINE Alu 0 311 214 22 35 0 0 chr13 40742850 40742879 -61130290 + AT_rich Low_complexity Low_complexity 1 29 0 26 98 0 0 chr13 40743367 40743449 -61129720 + AT_rich Low_complexity Low_complexity 1 82 0 215 179 0 0 chr13 40746372 40746411 -61126758 + L2 LINE L2 3272 3310 -3 500 85 12 37 chr13 40746892 40746974 -61126195 + MADE1 DNA Mariner 1 80 0 290 213 12 25 chr13 40746979 40747059 -61126110 - LTR67 LTR ERVL -6 551 473 24 32 0 0 chr13 40748306 40748337 -61124832 + AT_rich Low_complexity Low_complexity 1 31 0 1784 163 14 94 chr13 40748348 40748772 -61124397 - MLT1B LTR MaLR 0 390 1 219 273 0 18 chr13 40748815 40748870 -61124299 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 268 183 141 0 chr13 40750109 40750180 -61122989 + L1ME4a LINE L1 6012 6092 -29 624 128 49 0 chr13 40750209 40750311 -61122858 - THE1C LTR MaLR -19 356 250 2076 114 7 17 chr13 40751864 40752163 -61121006 + AluSg SINE Alu 1 296 -14 180 0 0 0 chr13 40752266 40752286 -61120883 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1777 309 120 46 chr13 40753508 40753674 -61119495 - L2 LINE L2 0 3313 3161 204 111 0 0 chr13 40753674 40753710 -61119459 + (TG)n Simple_repeat Simple_repeat 1 36 0 1777 309 120 46 chr13 40753710 40754768 -61118401 - L2 LINE L2 -152 3161 2042 183 122 54 27 chr13 40754789 40754863 -61118306 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 24 67 0 0 chr13 40754870 40754915 -61118254 + AT_rich Low_complexity Low_complexity 1 45 0 453 288 137 66 chr13 40755891 40756301 -61116868 + MLT1K LTR MaLR 36 474 -114 7261 40 0 1 chr13 40756365 40757823 -61115346 - L1PA5 LINE L1 0 6154 4699 265 325 98 24 chr13 40758400 40758523 -61114646 + L3 LINE CR1 1285 1416 -161 333 274 32 11 chr13 40758731 40758826 -61114343 - MIR SINE MIR -109 153 57 29 47 0 0 chr13 40759022 40759065 -61114104 + AT_rich Low_complexity Low_complexity 1 43 0 431 256 196 20 chr13 40759533 40759732 -61113437 + MIR SINE MIR 8 241 -21 296 300 175 0 chr13 40762523 40762683 -61110486 - MIR SINE MIR -44 218 31 2394 218 55 15 chr13 40763459 40764059 -61109110 + MLT1E3 LTR MaLR 1 624 0 28 0 0 0 chr13 40764202 40764230 -61108939 + AT_rich Low_complexity Low_complexity 1 28 0 1814 188 27 3 chr13 40764776 40765112 -61108057 + MER2 DNA MER2_type 1 344 0 288 0 0 0 chr13 40765119 40765151 -61108018 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 128 6 0 chr13 40765225 40765280 -61107889 + AluY SINE Alu 1 40 -262 1575 97 0 0 chr13 40765282 40765488 -61107681 + AluY SINE Alu 92 297 -14 1727 161 73 14 chr13 40765658 40766012 -61107157 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr13 40766107 40766138 -61107031 + AT_rich Low_complexity Low_complexity 1 31 0 953 245 10 10 chr13 40766456 40766664 -61106505 + MER45C DNA AcHobo 1 208 -745 480 284 130 50 chr13 40766679 40766918 -61106251 + MER45C DNA AcHobo 695 952 -1 212 309 36 36 chr13 40767480 40767564 -61105605 - MIR3 SINE MIR -37 171 88 226 282 35 35 chr13 40768276 40768361 -61104808 - L2 LINE L2 -4 3309 3225 387 307 33 40 chr13 40768925 40769075 -61104094 + MIR SINE MIR 20 168 -94 344 239 128 26 chr13 40769422 40769539 -61103630 - MIR3 SINE MIR -76 132 4 1666 194 137 3 chr13 40769736 40770117 -61103052 - MSTB1 LTR MaLR 0 432 1 422 275 56 31 chr13 40770217 40770377 -61102792 + MLT1L LTR MaLR 153 316 -299 252 59 0 0 chr13 40770741 40770775 -61102394 + (TA)n Simple_repeat Simple_repeat 1 34 0 220 225 141 14 chr13 40770911 40770982 -61102187 + L2 LINE L2 2664 2743 -571 386 255 20 60 chr13 40771012 40771161 -61102008 - MER5B DNA MER1_type 0 178 36 256 269 67 58 chr13 40771169 40771273 -61101896 - MER5B DNA MER1_type -68 110 6 250 315 0 0 chr13 40771515 40771588 -61101581 - MLT1J LTR MaLR -324 187 115 602 284 47 58 chr13 40771991 40772248 -61100921 + MIR SINE MIR 3 256 -6 845 328 37 32 chr13 40773451 40773853 -61099316 + L1M3d LINE L1 1 404 -5487 287 360 20 39 chr13 40773939 40774092 -61099077 + L1M3d LINE L1 523 672 -5219 28 0 0 0 chr13 40774186 40774214 -61098955 + AT_rich Low_complexity Low_complexity 1 28 0 639 272 179 41 chr13 40774230 40774367 -61098802 + L1M3d LINE L1 664 781 -5120 553 235 43 0 chr13 40774367 40774482 -61098687 - FLAM_A SINE Alu -12 121 2 639 272 179 41 chr13 40774482 40774902 -61098267 + L1M3d LINE L1 781 1298 -4603 * 12446 83 4 1 chr13 40774897 40777379 -61095790 + L1PA7 LINE L1 3640 6124 -30 918 237 48 71 chr13 40777389 40777781 -61095388 + L1MB1 LINE L1 1493 1875 -4509 728 261 85 24 chr13 40778147 40778696 -61094473 + L1MB1 LINE L1 1979 2562 -3820 12632 41 0 19 chr13 40778696 40780573 -61092596 - L1PA5 LINE L1 -486 5668 3827 4005 44 2 0 chr13 40780573 40781065 -61092104 + L1PA5 LINE L1 5648 6143 -11 25 31 0 0 chr13 40781079 40781111 -61092058 + AT_rich Low_complexity Low_complexity 1 32 0 2194 259 66 16 chr13 40781124 40781941 -61091228 + L1MB1 LINE L1 2551 3408 -2974 * 6309 201 20 14 chr13 40781933 40783368 -61089801 + L1MB1 LINE L1 3800 5243 -1139 2560 14 0 0 chr13 40783358 40783648 -61089521 + L1HS LINE L1 5855 6144 -11 * 244 229 0 0 chr13 40783659 40783720 -61089449 + A-rich Low_complexity Low_complexity 1 61 0 3034 206 39 51 chr13 40783720 40784904 -61088265 + L1MB1 LINE L1 5228 6395 -9 593 279 115 32 chr13 40784989 40785301 -61087868 + L1 LINE L1 2110 2447 -3699 * 613 119 19 132 chr13 40785300 40785459 -61087710 + L1MB1 LINE L1 6028 6168 0 201 266 43 0 chr13 40785863 40785957 -61087212 + (AATAG)n Simple_repeat Simple_repeat 3 100 0 278 276 0 0 chr13 40786389 40786465 -61086704 + MER69 DNA AcHobo 2442 2517 -9 392 258 65 0 chr13 40787222 40787377 -61085792 + MER112 DNA MER1_type 90 254 -6 707 224 7 0 chr13 40787622 40787765 -61085404 - MER58A DNA MER1_type -35 189 46 295 283 76 43 chr13 40787801 40787985 -61085184 + L2 LINE L2 3113 3302 -11 486 306 35 0 chr13 40787985 40788155 -61085014 - MER110 LTR ERV1 0 491 316 333 0 0 0 chr13 40788174 40788211 -61084958 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 2222 201 66 4 chr13 40788211 40788743 -61084426 - L1MD2 LINE L1 -16 6343 5780 274 243 29 14 chr13 40788991 40789061 -61084108 + L2 LINE L2 3243 3313 0 26 30 0 0 chr13 40789075 40789108 -61084061 + AT_rich Low_complexity Low_complexity 1 33 0 180 387 42 17 chr13 40789208 40789327 -61083842 + MIR3 SINE MIR 86 207 -1 374 183 0 0 chr13 40789371 40789442 -61083727 - L1MD3 LINE L1 -3 7992 7922 1743 224 75 5 chr13 40789470 40789899 -61083270 - L1MD2 LINE L1 -517 5842 5384 392 250 17 42 chr13 40789899 40790019 -61083150 - MER110 LTR ERV1 -186 305 189 1463 102 0 5 chr13 40790019 40790234 -61082935 + L1PA7 LINE L1 5780 5993 -161 7255 40 1 0 chr13 40790277 40791802 -61081367 + L1PA5 LINE L1 4634 6160 0 325 304 27 0 chr13 40791806 40791918 -61081251 - MER110 LTR ERV1 -318 173 59 2151 65 0 4 chr13 40792118 40792393 -61080776 + AluY SINE Alu 3 276 -35 206 293 0 0 chr13 40792621 40792679 -61080490 + MIR SINE MIR 41 98 -164 2142 158 6 0 chr13 40792714 40793069 -61080100 - L1P LINE L1 -1838 4308 3952 25 0 0 0 chr13 40793069 40793094 -61080075 + AT_rich Low_complexity Low_complexity 1 25 0 338 278 196 0 chr13 40793173 40793306 -61079863 + L1ME LINE L1 5526 5684 -437 2253 87 7 10 chr13 40793332 40793631 -61079538 - AluSx SINE Alu -14 298 1 285 257 100 0 chr13 40793646 40793716 -61079453 + L2 LINE L2 3197 3273 -40 731 139 16 8 chr13 40793729 40793851 -61079318 + L1P4 LINE L1 5578 5700 -468 990 107 13 0 chr13 40793853 40794002 -61079167 + L1P4 LINE L1 5668 5818 -350 23 0 0 0 chr13 40794731 40794754 -61078415 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 40794954 40794983 -61078186 + AT_rich Low_complexity Low_complexity 1 29 0 558 0 0 0 chr13 40795165 40795227 -61077942 + (CA)n Simple_repeat Simple_repeat 1 62 0 242 216 14 0 chr13 40795848 40795922 -61077247 + CT-rich Low_complexity Low_complexity 3 77 0 1542 236 25 63 chr13 40797153 40797558 -61075611 + MLT1D LTR MaLR 1 383 -122 1555 228 22 6 chr13 40797558 40797914 -61075255 - MLT1A1 LTR MaLR -2 363 2 1542 236 25 63 chr13 40797914 40798030 -61075139 + MLT1D LTR MaLR 383 502 -3 428 332 101 33 chr13 40798295 40798690 -61074479 - L1M4 LINE L1 -1704 4442 4021 532 272 91 59 chr13 40799036 40799543 -61073626 - HAL1b LINE L1 -607 741 219 31 0 0 0 chr13 40800403 40800434 -61072735 + AT_rich Low_complexity Low_complexity 1 31 0 34 65 0 0 chr13 40800701 40800763 -61072406 + AT_rich Low_complexity Low_complexity 1 62 0 2421 94 13 24 chr13 40800823 40801196 -61071973 - L1PB1 LINE L1 -1 6150 5782 3719 110 10 12 chr13 40801243 40801264 -61071905 - L1PB1 LINE L1 -356 5795 5775 488 48 48 0 chr13 40801264 40801348 -61071821 + (TA)n Simple_repeat Simple_repeat 2 89 0 3719 110 10 12 chr13 40801348 40802008 -61071161 - L1PB1 LINE L1 -376 5775 5116 52 69 0 0 chr13 40802555 40802656 -61070513 + AT_rich Low_complexity Low_complexity 1 101 0 487 311 45 11 chr13 40803307 40803619 -61069550 - LTR16A LTR ERVL -38 412 65 956 252 92 31 chr13 40804178 40804680 -61068489 - MER76 LTR ERV -39 649 1 1151 335 69 49 chr13 40804725 40804806 -61068363 - MERVL LTR ERVL -597 4888 4810 1806 185 3 57 chr13 40804806 40805174 -61067995 + MER7A DNA MER2_type 1 346 0 1151 335 69 49 chr13 40805174 40806753 -61066416 - MERVL LTR ERVL -675 4810 3195 1185 316 45 68 chr13 40806831 40807639 -61065530 - MERVL LTR ERVL -2079 2917 2129 252 273 13 26 chr13 40807772 40807849 -61065320 - MERVL LTR ERVL -3696 1958 1883 2037 156 58 14 chr13 40808511 40808928 -61064241 - L1MA9 LINE L1 0 6312 5878 898 291 81 31 chr13 40809231 40809554 -61063615 + LTR40a LTR ERVL 4 342 -177 289 239 15 0 chr13 40809555 40809622 -61063547 - MLT1E LTR MaLR -7 647 580 766 303 32 104 chr13 40809632 40809805 -61063364 - MLT1E LTR MaLR -182 411 227 468 51 0 0 chr13 40809805 40809864 -61063305 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 766 303 32 104 chr13 40809864 40810133 -61063036 - MLT1E LTR MaLR -366 227 1 973 167 17 6 chr13 40810138 40810312 -61062857 + LTR40a LTR ERVL 344 519 0 23 0 0 0 chr13 40811495 40811518 -61061651 + AT_rich Low_complexity Low_complexity 1 23 0 214 175 0 48 chr13 40811820 40811883 -61061286 + GA-rich Low_complexity Low_complexity 4 63 0 765 254 6 12 chr13 40811893 40812066 -61061103 + MER63A DNA MER1_type 39 210 0 2668 174 80 28 chr13 40812718 40813333 -61059836 - L1MA4 LINE L1 -8 6292 5646 309 291 179 0 chr13 40814213 40814330 -61058839 + MIR3 SINE MIR 67 204 -4 410 258 0 0 chr13 40814539 40814632 -61058537 + MLT1J1 LTR MaLR 11 103 -343 21 0 0 0 chr13 40815110 40815131 -61058038 + AT_rich Low_complexity Low_complexity 1 21 0 223 180 0 49 chr13 40815542 40815588 -61057581 + GA-rich Low_complexity Low_complexity 4 48 -13 1839 139 0 78 chr13 40815588 40815919 -61057250 + AluSx SINE Alu 1 305 -7 223 180 0 49 chr13 40815919 40815933 -61057236 + GA-rich Low_complexity Low_complexity 48 61 0 190 56 56 0 chr13 40816197 40816233 -61056936 + (TA)n Simple_repeat Simple_repeat 1 38 0 1000 344 46 11 chr13 40816273 40816706 -61056463 + L1M4b LINE L1 33 480 -6379 391 160 0 160 chr13 40816713 40816832 -61056337 + L1M4b LINE L1 1260 1359 -5500 1292 230 34 11 chr13 40816854 40817249 -61055920 + L1M4b LINE L1 1314 1712 -5143 1541 245 34 21 chr13 40817254 40817634 -61055535 - MER70A LTR ERVL 0 472 88 887 147 0 73 chr13 40817624 40817801 -61055368 - MER70B LTR ERVL -414 164 1 * 1143 265 53 20 chr13 40817801 40818447 -61054722 + L1M4b LINE L1 1707 2717 -4241 2946 271 54 38 chr13 40818636 40820459 -61052710 + L1M4 LINE L1 1731 3544 -2671 397 185 93 63 chr13 40820452 40820657 -61052512 + L1M4 LINE L1 3931 4141 -2074 * 382 271 16 8 chr13 40820658 40820787 -61052382 + L1M4 LINE L1 4272 4401 -1814 676 210 44 34 chr13 40820837 40821042 -61052127 + L1MA7 LINE L1 6083 6289 -2 2351 241 42 34 chr13 40821048 40822428 -61050741 + L1M4 LINE L1 4381 5770 -483 1471 272 44 48 chr13 40822463 40822963 -61050206 + MER21B LTR ERV1 22 519 -344 464 329 47 57 chr13 40823294 40823605 -61049564 + MLT1H LTR MaLR 127 434 -115 1731 199 75 94 chr13 40823605 40823682 -61049487 + MER67C LTR ERV1 1 78 -632 2141 117 0 22 chr13 40823682 40823998 -61049171 + AluSx SINE Alu 1 309 -3 1731 199 75 94 chr13 40823998 40824642 -61048527 + MER67C LTR ERV1 78 708 -2 464 329 47 57 chr13 40824642 40824755 -61048414 + MLT1H LTR MaLR 434 547 -2 1704 199 42 154 chr13 40824760 40825565 -61047604 - LTR8A LTR ERV1 0 727 1 10263 199 89 82 chr13 40825603 40830457 -61042712 - HUERS-P1 LTR ERV1 -33 6230 768 2897 191 32 114 chr13 40830454 40831330 -61041839 - HUERS-P1 LTR ERV1 -4461 1485 361 * 211 161 18 18 chr13 40831389 40831445 -61041724 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 393 317 24 37 chr13 40831724 40831888 -61041281 - HUERS-P1 LTR ERV1 -6101 162 1 1911 196 42 154 chr13 40831888 40832669 -61040500 - LTR8A LTR ERV1 0 727 34 348 264 7 42 chr13 40832697 40832841 -61040328 - L1MC5 LINE L1 -38 7923 7785 1389 192 0 12 chr13 40833011 40833261 -61039908 - AluSx SINE Alu -15 297 51 3644 147 43 8 chr13 40833826 40834457 -61038712 - MER39B LTR ERV1 0 653 1 288 241 0 0 chr13 40834632 40834711 -61038458 + (CA)n Simple_repeat Simple_repeat 2 80 0 1132 264 188 41 chr13 40836475 40837013 -61036156 - MLT1E2 LTR MaLR -9 617 1 257 363 81 0 chr13 40837383 40837507 -61035662 + MER5A DNA MER1_type 56 189 0 2418 166 60 20 chr13 40837566 40838113 -61035056 + L1MA8 LINE L1 3997 4565 -1581 1339 269 52 11 chr13 40838113 40838481 -61034688 + MSTD LTR MaLR 1 383 -13 5104 164 42 14 chr13 40838483 40840134 -61033035 + L1MA8 LINE L1 4572 6271 -20 42 48 0 0 chr13 40840134 40840197 -61032972 + AT_rich Low_complexity Low_complexity 1 63 0 592 261 18 78 chr13 40842384 40842684 -61030485 + LTR16A1 LTR ERVL 189 457 0 228 302 189 9 chr13 40843032 40843138 -61030031 - L2 LINE L2 -199 3073 2949 1424 111 5 0 chr13 40843185 40843400 -61029769 - AluSg/x SINE Alu 0 309 94 22 35 0 0 chr13 40844093 40844122 -61029047 + AT_rich Low_complexity Low_complexity 1 29 0 506 111 0 0 chr13 40845509 40845581 -61027588 - MSTA LTR MaLR 0 428 357 570 101 0 0 chr13 40845581 40845660 -61027509 + AluY SINE Alu 18 96 -215 254 326 65 7 chr13 40846239 40846377 -61026792 - MIR SINE MIR -30 232 87 2677 160 25 28 chr13 40846533 40847036 -61026133 - L1MA4 LINE L1 -14 6286 5784 1960 157 0 6 chr13 40847036 40847349 -61025820 - AluSx SINE Alu -1 311 1 2677 160 25 28 chr13 40847349 40847375 -61025794 - L1MA4 LINE L1 -516 5784 5759 21 0 0 0 chr13 40847973 40847994 -61025175 + AT_rich Low_complexity Low_complexity 1 21 0 362 344 16 0 chr13 40848494 40848622 -61024547 - L2 LINE L2 -4 3309 3180 770 280 61 51 chr13 40848653 40849046 -61024123 - MLT1I LTR MaLR -8 401 5 1087 235 24 4 chr13 40849107 40849362 -61023807 + AluJo SINE Alu 1 260 -52 783 104 17 9 chr13 40849426 40849541 -61023628 + MLT1E LTR MaLR 20 135 -458 718 232 107 6 chr13 40849543 40849711 -61023458 - MLT1A2 LTR MaLR 0 374 190 599 306 5 21 chr13 40849793 40849979 -61023190 - MLT1A2 LTR MaLR -191 183 1 * 1571 242 96 16 chr13 40849979 40850411 -61022758 + MLT1E LTR MaLR 127 593 0 1187 289 60 31 chr13 40850499 40850917 -61022252 + MER70B LTR ERVL 1 430 -148 25 0 0 0 chr13 40851203 40851228 -61021941 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 40851298 40851326 -61021843 + AT_rich Low_complexity Low_complexity 1 28 0 418 222 87 16 chr13 40851486 40851612 -61021557 - MLT1H LTR MaLR -4 545 411 365 239 0 0 chr13 40851684 40851755 -61021414 - AluJ/FLAM SINE Alu -223 79 9 1324 186 3 3 chr13 40851856 40852151 -61021018 - L1MA4 LINE L1 -3 6297 6003 210 37 0 0 chr13 40852572 40852599 -61020570 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 2159 69 28 10 chr13 40852599 40852878 -61020291 - AluY SINE Alu -24 287 1 198 367 0 0 chr13 40852913 40852992 -61020177 - MIR SINE MIR -74 188 110 435 261 85 0 chr13 40853099 40853229 -61019940 + MLT1I LTR MaLR 81 221 -188 360 293 30 42 chr13 40853293 40853460 -61019709 + MLT1I LTR MaLR 245 409 0 235 315 41 0 chr13 40853460 40853533 -61019636 - MIR SINE MIR -185 77 2 2053 102 7 16 chr13 40853559 40853862 -61019307 - AluSx SINE Alu -12 300 1 181 243 0 0 chr13 40854389 40854426 -61018743 - MIR SINE MIR -6 256 220 228 250 0 0 chr13 40856025 40856041 -61017128 + MER3 DNA MER1_type 33 48 -161 238 232 0 0 chr13 40856041 40856097 -61017072 - MER3 DNA MER1_type -1 208 153 195 100 0 0 chr13 40856592 40856622 -61016547 + (CA)n Simple_repeat Simple_repeat 1 30 0 1571 189 43 0 chr13 40856623 40856945 -61016224 + MER44D DNA MER2_type 4 609 0 221 209 60 0 chr13 40856945 40857012 -61016157 + (TA)n Simple_repeat Simple_repeat 2 72 0 1075 346 22 7 chr13 40857541 40857954 -61015215 + LTR16A LTR ERVL 25 443 -7 475 308 23 6 chr13 40858008 40858180 -61014989 + MIR SINE MIR 75 249 -13 29 60 0 0 chr13 40859171 40859221 -61013948 + AT_rich Low_complexity Low_complexity 1 50 0 218 234 21 0 chr13 40860166 40860213 -61012956 + MIR SINE MIR 96 143 -119 237 65 0 0 chr13 40860389 40860420 -61012749 + (T)n Simple_repeat Simple_repeat 1 31 0 288 0 0 0 chr13 40860420 40860452 -61012717 + (TG)n Simple_repeat Simple_repeat 1 32 0 2147 160 2 90 chr13 40860452 40860896 -61012273 - LTR8 LTR ERV1 -106 585 181 219 331 24 48 chr13 40860915 40861039 -61012130 + MIR SINE MIR 142 262 0 249 33 0 0 chr13 40862207 40862237 -61010932 + (TC)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr13 40862236 40862262 -61010907 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 1955 184 54 7 chr13 40862265 40862672 -61010497 + MSTB LTR MaLR 1 426 0 390 301 201 9 chr13 40864171 40864400 -61008769 - L2 LINE L2 -165 3148 2876 1344 201 27 133 chr13 40864515 40864738 -61008431 + MSTD LTR MaLR 1 155 -241 3012 154 71 4 chr13 40864738 40865276 -61007893 + L1PA16 LINE L1 5591 6164 -2 1344 201 27 133 chr13 40865276 40865495 -61007674 + MSTD LTR MaLR 155 396 0 187 409 17 9 chr13 40866432 40866547 -61006622 - L2 LINE L2 -332 2940 2825 22 0 0 0 chr13 40866774 40866796 -61006373 + AT_rich Low_complexity Low_complexity 1 22 0 13419 228 31 21 chr13 40867019 40869309 -61003860 - L1PA16 LINE L1 -9 7595 5329 1420 221 10 17 chr13 40869309 40869607 -61003562 - AluJb SINE Alu -16 296 1 13419 228 31 21 chr13 40869607 40872485 -61000684 - L1PA16 LINE L1 -2275 5329 2354 15511 176 38 12 chr13 40872493 40872809 -61000360 - L1PB2 LINE L1 -37 6830 6524 414 39 0 0 chr13 40872809 40872861 -61000308 + (TG)n Simple_repeat Simple_repeat 2 53 0 15511 176 38 12 chr13 40872861 40873288 -60999881 - L1PB2 LINE L1 -343 6524 6110 1534 214 7 0 chr13 40873288 40873605 -60999564 - AluSx SINE Alu 0 319 1 15511 176 38 12 chr13 40873605 40879490 -60993679 - L1PB2 LINE L1 -757 6110 1 316 214 29 64 chr13 40879509 40879649 -60993520 - L1PA16 LINE L1 -5217 2364 2230 253 316 32 0 chr13 40879907 40880002 -60993167 - L1PA16 LINE L1 -5399 2182 2085 621 342 18 44 chr13 40880291 40880741 -60992428 - L1PA16 LINE L1 -6349 1225 788 21 36 0 0 chr13 40880948 40880976 -60992193 + AT_rich Low_complexity Low_complexity 1 28 0 300 27 0 0 chr13 40881626 40881663 -60991506 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr13 40881662 40881698 -60991471 + (CA)n Simple_repeat Simple_repeat 1 36 0 196 347 195 20 chr13 40882908 40883461 -60989708 + L2 LINE L2 1788 2437 -877 954 172 75 0 chr13 40883502 40883688 -60989481 + L1PA16 LINE L1 5964 6163 -3 2682 167 6 62 chr13 40883757 40884164 -60989005 + LTR44 LTR ERV1 1 371 -148 5029 52 2 0 chr13 40884164 40884794 -60988375 + L1PA5 LINE L1 5524 6154 0 2682 167 6 62 chr13 40884794 40884936 -60988233 + LTR44 LTR ERV1 371 519 0 186 370 134 0 chr13 40884940 40885067 -60988102 + L2 LINE L2 2596 2739 -575 22 0 0 0 chr13 40885410 40885432 -60987737 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 40886822 40886866 -60986303 + AT_rich Low_complexity Low_complexity 1 44 0 1267 294 96 12 chr13 40887286 40887796 -60985373 - MLT1H1 LTR MaLR -2 553 1 21 36 0 0 chr13 40889433 40889461 -60983708 + AT_rich Low_complexity Low_complexity 1 28 0 366 260 117 96 chr13 40889916 40890065 -60983104 - L1M4 LINE L1 -2169 3977 3833 2054 111 0 14 chr13 40890065 40890362 -60982807 - AluSc SINE Alu -16 293 1 366 260 117 96 chr13 40890362 40890589 -60982580 - L1M4 LINE L1 -2313 3833 3593 21 0 0 0 chr13 40890591 40890612 -60982557 + AT_rich Low_complexity Low_complexity 1 21 0 220 250 13 13 chr13 40890946 40891022 -60982147 + T-rich Low_complexity Low_complexity 4 79 0 1891 153 0 20 chr13 40891421 40891722 -60981447 - AluSx SINE Alu -15 297 3 345 100 0 0 chr13 40893133 40893183 -60979986 + (TA)n Simple_repeat Simple_repeat 1 50 0 222 284 302 18 chr13 40893536 40893705 -60979464 + MIR SINE MIR 46 262 0 4963 165 25 4 chr13 40894409 40895330 -60977839 - L1MA6 LINE L1 0 6300 5361 1320 200 0 31 chr13 40895376 40895636 -60977533 + AluJb SINE Alu 54 305 -7 1474 174 34 27 chr13 40896861 40897154 -60976015 + AluJo SINE Alu 1 295 -17 1594 113 5 0 chr13 40897173 40897394 -60975775 + AluSq SINE Alu 1 222 -91 25 31 0 0 chr13 40898680 40898712 -60974457 + AT_rich Low_complexity Low_complexity 1 32 0 356 231 0 46 chr13 40898822 40898952 -60974217 - L1MEc LINE L1 -5282 1114 991 301 258 0 0 chr13 40898953 40899015 -60974154 - MER96 DNA MER1_type? 0 175 114 629 270 40 0 chr13 40899028 40899228 -60973941 - L1MEc LINE L1 -5425 971 764 649 137 0 8 chr13 40899370 40899535 -60973634 - AluSg/x SINE Alu 0 312 177 279 0 0 0 chr13 40899735 40899766 -60973403 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 67 0 0 chr13 40900178 40900223 -60972946 + AT_rich Low_complexity Low_complexity 1 45 0 37 62 0 0 chr13 40900715 40900780 -60972389 + AT_rich Low_complexity Low_complexity 1 65 0 2281 96 3 3 chr13 40900933 40901236 -60971933 + AluSx SINE Alu 1 303 -9 302 101 58 0 chr13 40903686 40903755 -60969414 + (TG)n Simple_repeat Simple_repeat 2 74 0 252 0 0 0 chr13 40903937 40903965 -60969204 + (TG)n Simple_repeat Simple_repeat 2 29 0 212 211 19 0 chr13 40904453 40904505 -60968664 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 36 0 0 chr13 40905382 40905410 -60967759 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 40908557 40908591 -60964578 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 40910158 40910179 -60962990 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 40916446 40916466 -60956703 + (A)n Simple_repeat Simple_repeat 1 20 0 360 0 0 0 chr13 40916466 40916506 -60956663 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr13 40917606 40917634 -60955535 + AT_rich Low_complexity Low_complexity 1 28 0 198 386 15 23 chr13 40920238 40920370 -60952799 - MIR SINE MIR -131 131 1 25 31 0 0 chr13 40920456 40920488 -60952681 + AT_rich Low_complexity Low_complexity 1 32 0 202 212 30 15 chr13 40920549 40920615 -60952554 + (TA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr13 40920797 40920818 -60952351 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr13 40920929 40920970 -60952199 + AT_rich Low_complexity Low_complexity 1 41 0 23 68 0 0 chr13 40921218 40921262 -60951907 + AT_rich Low_complexity Low_complexity 1 44 0 441 0 0 0 chr13 40925100 40925149 -60948020 + (TG)n Simple_repeat Simple_repeat 2 50 0 186 321 0 0 chr13 40925587 40925640 -60947529 + L2 LINE L2 3256 3308 -5 635 269 40 17 chr13 40925766 40925941 -60947228 + MER46C DNA MER2_type 102 280 -58 1490 176 86 0 chr13 40926244 40926522 -60946647 - AluJb SINE Alu -8 304 3 2784 13 0 0 chr13 40926883 40927193 -60945976 + AluYb8 SINE Alu 1 310 -8 216 136 17 51 chr13 40928012 40928071 -60945098 + (TTTAA)n Simple_repeat Simple_repeat 5 61 0 1031 181 5 11 chr13 40929054 40929242 -60943927 - MER58A DNA MER1_type -1 223 37 24 0 0 0 chr13 40929897 40929921 -60943248 + AT_rich Low_complexity Low_complexity 1 24 0 955 113 7 0 chr13 40931661 40931802 -60941367 + AluSp/q SINE Alu 164 305 -8 261 163 0 0 chr13 40932096 40932145 -60941024 + T-rich Low_complexity Low_complexity 1 49 0 180 253 12 60 chr13 40932343 40932426 -60940743 + MIR SINE MIR 184 262 0 459 330 27 27 chr13 40935792 40935980 -60937189 + MIR SINE MIR 40 227 -35 24 0 0 0 chr13 40937152 40937176 -60935993 + AT_rich Low_complexity Low_complexity 1 24 0 744 43 0 0 chr13 40939911 40940003 -60933166 + (TA)n Simple_repeat Simple_repeat 2 93 0 998 230 95 40 chr13 40940003 40940409 -60932760 - MER57A LTR ERV1 -2 401 1 1773 168 3 0 chr13 40940453 40940738 -60932431 - AluSx SINE Alu -26 286 1 25 51 0 0 chr13 40943099 40943138 -60930031 + AT_rich Low_complexity Low_complexity 1 39 0 362 221 168 0 chr13 40943146 40943259 -60929910 + MIR SINE MIR 75 206 -56 398 234 11 0 chr13 40946671 40946765 -60926404 - MER67D LTR ERV1 -78 436 342 239 288 51 17 chr13 40946809 40946927 -60926242 - L1MC4a LINE L1 -1216 6592 6471 262 247 13 0 chr13 40947101 40947178 -60925991 - L1MC4 LINE L1 -51 7991 7914 470 259 42 12 chr13 40947242 40947408 -60925761 - L1MC4 LINE L1 -114 7928 7758 329 189 0 132 chr13 40947408 40947514 -60925655 + MER2 DNA MER2_type 1 92 -253 1057 130 0 47 chr13 40947524 40947716 -60925453 + AluJo SINE Alu 121 304 0 260 286 0 0 chr13 40947728 40947784 -60925385 - MER2 DNA MER2_type -5 340 285 1856 168 7 0 chr13 40947806 40948104 -60925065 + AluJb SINE Alu 11 310 -2 371 290 83 16 chr13 40948135 40948328 -60924841 - L1MC4 LINE L1 -288 7754 7549 21 36 0 0 chr13 40948997 40949025 -60924144 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr13 40949457 40949496 -60923673 + AT_rich Low_complexity Low_complexity 1 39 0 190 274 0 0 chr13 40949784 40949835 -60923334 - MIR SINE MIR -120 142 92 780 147 0 23 chr13 40950111 40950240 -60922929 - FLAM_C SINE Alu -7 126 1 2470 57 0 3 chr13 40950310 40950610 -60922559 + AluY SINE Alu 1 299 -12 1138 226 75 29 chr13 40951550 40951782 -60921387 + MLT1E2 LTR MaLR 61 316 -310 1318 62 0 11 chr13 40951782 40951959 -60921210 + L1PA4 LINE L1 5981 6155 0 1138 226 75 29 chr13 40951959 40952075 -60921094 + MLT1E2 LTR MaLR 316 425 -201 21 0 0 0 chr13 40952158 40952179 -60920990 + AT_rich Low_complexity Low_complexity 1 21 0 308 297 68 95 chr13 40952467 40952804 -60920365 - HAL1 LINE L1 -1097 1410 1083 2223 88 0 0 chr13 40952843 40953151 -60920018 - AluSq SINE Alu 0 308 1 6661 42 1 0 chr13 40953926 40954733 -60918436 + L1P LINE L1 3449 4256 -1890 21 36 0 0 chr13 40955340 40955368 -60917801 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 40955692 40955715 -60917454 + AT_rich Low_complexity Low_complexity 1 23 0 903 137 17 6 chr13 41057012 41057187 -60815982 + GA-rich Low_complexity Low_complexity 4 180 0 25 90 0 0 chr13 41057239 41057306 -60815863 + AT_rich Low_complexity Low_complexity 1 67 0 1337 220 28 3 chr13 41057941 41058223 -60814946 - AluJo SINE Alu -13 289 1 2584 181 35 22 chr13 41058223 41059018 -60814151 - L1P5 LINE L1 -660 5494 4693 299 324 37 0 chr13 41059931 41060039 -60813130 - L2 LINE L2 0 3313 3202 1681 164 41 20 chr13 41060039 41060332 -60812837 + THE1B LTR MaLR 1 299 -65 2185 172 5 15 chr13 41060332 41060739 -60812430 + THE1-int LTR MaLR 1056 1458 -122 21 36 0 0 chr13 41061033 41061061 -60812108 + AT_rich Low_complexity Low_complexity 1 28 0 517 189 18 0 chr13 41061188 41061299 -60811870 - L1MA8 LINE L1 -10 6281 6169 29 0 0 0 chr13 41061991 41062020 -60811149 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr13 41062074 41062122 -60811047 + AT_rich Low_complexity Low_complexity 1 48 0 1096 336 140 20 chr13 41062352 41062805 -60810364 - L2 LINE L2 -514 2800 2403 1652 229 23 21 chr13 41062805 41063237 -60809932 - Tigger2a DNA MER2_type -1 433 1 1096 336 140 20 chr13 41063237 41063533 -60809636 - L2 LINE L2 -911 2403 1961 1781 192 34 15 chr13 41063540 41063939 -60809230 + MLT2A2 LTR ERVL 1 345 -108 26 30 0 0 chr13 41064693 41064726 -60808443 + AT_rich Low_complexity Low_complexity 1 33 0 689 238 21 0 chr13 41064729 41064897 -60808272 + AluJb SINE Alu 138 308 0 1225 138 113 0 chr13 41064898 41065101 -60808068 - LTR17 LTR ERV1 0 780 555 9101 128 8 2 chr13 41065208 41066740 -60806429 + L1P3 LINE L1 3941 5480 -674 21 0 0 0 chr13 41067411 41067432 -60805737 + AT_rich Low_complexity Low_complexity 1 21 0 352 320 119 18 chr13 41067504 41067723 -60805446 - MIR SINE MIR -7 255 15 1360 236 18 66 chr13 41069806 41069978 -60803191 + L1M1 LINE L1 2696 2875 -4691 1596 222 0 3 chr13 41069978 41070289 -60802880 + AluJb SINE Alu 1 310 -2 1360 236 18 66 chr13 41070289 41070680 -60802489 + L1M1 LINE L1 2875 3406 -4160 763 145 0 26 chr13 41070673 41070898 -60802271 + L1PA16 LINE L1 5898 6166 0 * 3033 234 15 39 chr13 41070930 41071237 -60801932 + L1M1 LINE L1 3293 3606 -3959 664 127 18 0 chr13 41071237 41071347 -60801822 + L1MA1 LINE L1 6187 6298 -4 3033 234 15 39 chr13 41071347 41072204 -60800965 + L1M1 LINE L1 3606 4434 -3131 1682 203 26 34 chr13 41072191 41072395 -60800774 + L1PB4 LINE L1 5697 5898 -258 * 1658 123 25 4 chr13 41072395 41072638 -60800531 + AluSx SINE Alu 54 301 -11 1682 203 26 34 chr13 41072638 41072818 -60800351 + L1PB4 LINE L1 5898 6078 -78 3327 206 15 11 chr13 41073911 41074654 -60798515 - L1MB4 LINE L1 -8 6172 5427 202 381 7 43 chr13 41075624 41075763 -60797406 + L2 LINE L2 3137 3270 -2 226 162 0 0 chr13 41076749 41076786 -60796383 - MSTA LTR MaLR 0 428 392 5889 106 2 0 chr13 41076890 41077742 -60795427 + HERVH LTR ERV1 3140 3993 -3720 4301 148 1 1 chr13 41077744 41078406 -60794763 + HERVH LTR ERV1 4488 5149 -2564 1337 123 18 48 chr13 41078407 41078634 -60794535 + HERVH LTR ERV1 5600 5819 -1894 * 2399 97 45 13 chr13 41078632 41079012 -60794157 + HERVH LTR ERV1 7322 7713 0 3292 69 2 9 chr13 41079012 41079463 -60793706 + LTR7 LTR ERV1 1 448 -2 3081 121 2 11 chr13 41079465 41079927 -60793242 - LTR17 LTR ERV1 -322 458 1 258 219 16 16 chr13 41080193 41080257 -60792912 + GA-rich Low_complexity Low_complexity 2 65 0 237 196 0 0 chr13 41080370 41080426 -60792743 + (TA)n Simple_repeat Simple_repeat 2 57 0 410 36 18 0 chr13 41080460 41080516 -60792653 + (GA)n Simple_repeat Simple_repeat 2 58 0 33 25 0 0 chr13 41081565 41081605 -60791564 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr13 41082897 41082918 -60790251 + AT_rich Low_complexity Low_complexity 1 21 0 242 314 0 16 chr13 41083369 41083493 -60789676 + HAL1 LINE L1 1231 1352 -1155 951 158 25 0 chr13 41083966 41084162 -60789007 + L1MA4 LINE L1 6097 6297 -3 2248 103 0 3 chr13 41084544 41084846 -60788323 - AluSq SINE Alu -12 301 1 1719 161 151 6 chr13 41085036 41085360 -60787809 - MSTA LTR MaLR -57 371 1 8470 184 26 12 chr13 41085360 41086987 -60786182 - MSTA-int LTR MaLR 0 1651 1 1773 161 174 8 chr13 41086987 41087354 -60785815 - MSTA LTR MaLR 0 428 1 1001 281 48 99 chr13 41087546 41088112 -60785057 - MER77 LTR ERV1 -14 591 55 1661 149 0 7 chr13 41088328 41088610 -60784559 + HERVH LTR ERV1 3714 3993 -3720 4172 147 8 1 chr13 41088612 41089270 -60783899 + HERVH LTR ERV1 4488 5149 -2564 1386 109 20 0 chr13 41089295 41089496 -60783673 + HERVH LTR ERV1 5615 5819 -1894 * 2364 93 50 13 chr13 41089494 41089872 -60783297 + HERVH LTR ERV1 7322 7713 0 3189 57 27 11 chr13 41089872 41090313 -60782856 + LTR7 LTR ERV1 1 448 -2 4834 182 26 19 chr13 41090314 41091497 -60781672 + L1MA3 LINE L1 5114 6305 0 396 299 13 0 chr13 41091543 41091700 -60781469 + L1M4 LINE L1 1507 1665 -4877 567 231 75 8 chr13 41091702 41091836 -60781333 + FLAM_C SINE Alu 1 143 0 717 288 169 18 chr13 41091950 41092294 -60780875 + L1M4 LINE L1 1869 2160 -4486 3516 56 2 2 chr13 41092294 41092742 -60780427 - LTR7 LTR ERV1 -2 448 1 717 288 169 18 chr13 41092742 41093115 -60780054 + L1M4 LINE L1 2160 2694 -3952 1140 239 62 18 chr13 41093260 41093699 -60779470 + L1M4 LINE L1 2864 3321 -3323 26 30 0 0 chr13 41093853 41093886 -60779283 + AT_rich Low_complexity Low_complexity 1 33 0 664 222 28 14 chr13 41093889 41094033 -60779136 + AluJb SINE Alu 138 283 -29 24 0 0 0 chr13 41094034 41094058 -60779111 + AT_rich Low_complexity Low_complexity 1 24 0 1830 155 76 0 chr13 41094059 41094362 -60778807 - LTR17 LTR ERV1 0 780 455 3399 62 0 7 chr13 41094363 41094814 -60778355 + LTR7 LTR ERV1 1 448 -2 19595 90 25 34 chr13 41094816 41097837 -60775332 + HERVH LTR ERV1 1 2995 -4718 4416 89 2 0 chr13 41097816 41098421 -60774748 + HERVH LTR ERV1 3140 3745 -3968 * 2221 45 0 0 chr13 41098521 41098790 -60774379 + L1PA8A LINE L1 5564 5832 -299 663 250 8 48 chr13 41098807 41099075 -60774094 + pTR5 LTR ERV1 772 1028 -1410 4134 118 134 28 chr13 41099261 41100008 -60773161 + LTR12 LTR ERV1 1 826 0 901 70 84 3 chr13 41100008 41100130 -60773039 + LTR12 LTR ERV1 452 563 -151 2160 79 0 64 chr13 41100130 41100459 -60772710 + L1PA8 LINE L1 5863 6170 -2 901 70 84 3 chr13 41100459 41100475 -60772694 + LTR12 LTR ERV1 563 713 -1 323 429 16 4 chr13 41100565 41100819 -60772350 - MIR SINE MIR -2 260 4 1415 241 154 53 chr13 41100963 41101675 -60771494 + LTR1B LTR ERV1 1 983 -37 28 0 0 0 chr13 41101759 41101787 -60771382 + AT_rich Low_complexity Low_complexity 1 28 0 464 313 78 6 chr13 41101881 41102047 -60771122 - MIR SINE MIR -72 190 13 204 180 49 0 chr13 41102422 41102544 -60770625 + (TA)n Simple_repeat Simple_repeat 2 129 0 28 61 0 0 chr13 41102663 41102712 -60770457 + AT_rich Low_complexity Low_complexity 1 49 0 962 118 7 0 chr13 41103674 41103818 -60769351 - L1MA4A LINE L1 -331 5972 5828 307 132 176 22 chr13 41103825 41103916 -60769253 + L1MC4 LINE L1 6617 6721 -1321 232 250 109 33 chr13 41103841 41103933 -60769236 - L1MC4 LINE L1 -1323 6719 6621 * 1581 179 7 3 chr13 41103949 41104240 -60768929 - L1M1 LINE L1 -523 5777 5486 192 373 0 0 chr13 41104546 41104621 -60768548 - MIR SINE MIR -82 126 52 24 0 0 0 chr13 41105634 41105658 -60767511 + AT_rich Low_complexity Low_complexity 1 24 0 476 159 20 17 chr13 41105978 41105999 -60767170 - L1M1 LINE L1 -811 5492 5473 884 164 0 11 chr13 41105999 41106176 -60766993 - L1MA5 LINE L1 -2 6298 6124 476 159 20 17 chr13 41106176 41106281 -60766888 - L1M1 LINE L1 -830 5473 5369 1204 117 0 0 chr13 41106281 41106443 -60766726 - AluSp SINE Alu -18 295 134 652 233 43 95 chr13 41106783 41107015 -60766154 + AluJo SINE Alu 93 312 0 33 25 0 0 chr13 41107094 41107134 -60766035 + AT_rich Low_complexity Low_complexity 1 40 0 273 264 47 23 chr13 41107187 41107316 -60765853 - HAL1 LINE L1 -56 2451 2320 22 0 0 0 chr13 41107424 41107446 -60765723 + AT_rich Low_complexity Low_complexity 1 22 0 227 211 14 28 chr13 41107571 41107642 -60765527 + HsTC2 DNA Tc2 1827 1896 -2 307 355 29 41 chr13 41107992 41108234 -60764935 - HAL1 LINE L1 -782 1725 1487 977 241 19 23 chr13 41108500 41108766 -60764403 + L1MB4 LINE L1 5908 6172 -8 1276 200 85 11 chr13 41110394 41110664 -60762505 + AluJo SINE Alu 1 290 -22 194 62 31 0 chr13 41111291 41111323 -60761846 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 725 300 113 70 chr13 41112380 41112978 -60760191 + L1M4 LINE L1 14 658 -5884 2309 86 0 3 chr13 41112978 41113279 -60759890 - AluY SINE Alu -11 300 1 725 300 113 70 chr13 41113279 41113503 -60759666 + L1M4 LINE L1 658 871 -5671 1018 202 60 20 chr13 41113552 41113800 -60759369 + MER67C LTR ERV1 152 409 -301 281 270 54 5 chr13 41113941 41114076 -60759093 + L1M4 LINE L1 1124 1276 -5270 1966 140 3 3 chr13 41114947 41115240 -60757929 + AluSx SINE Alu 4 296 -16 21 0 0 0 chr13 41115338 41115359 -60757810 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 36 10 chr13 41117708 41117903 -60755266 + MLT1E LTR MaLR 41 240 -353 297 325 94 40 chr13 41118266 41118543 -60754626 + L2 LINE L2 3021 3312 -1 214 167 33 0 chr13 41118867 41118927 -60754242 + (TA)n Simple_repeat Simple_repeat 1 62 0 318 26 0 0 chr13 41120254 41120293 -60752876 + (TG)n Simple_repeat Simple_repeat 2 40 0 1295 184 19 99 chr13 41120324 41120689 -60752480 - MLT2C1 LTR ERVL -61 336 1 296 83 21 0 chr13 41120705 41120753 -60752416 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr13 41121199 41121228 -60751941 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr13 41122344 41122391 -60750778 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 41122403 41122435 -60750734 + AT_rich Low_complexity Low_complexity 1 32 0 1544 151 125 20 chr13 41122557 41122862 -60750307 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr13 41123212 41123240 -60749929 + AT_rich Low_complexity Low_complexity 1 28 0 638 260 51 46 chr13 41124265 41124461 -60748708 + L2 LINE L2 2339 2535 -779 801 220 13 0 chr13 41124461 41124620 -60748549 + MER2 DNA MER2_type 1 161 -184 375 144 0 0 chr13 41124628 41124698 -60748471 + L1M2 LINE L1 5594 5663 -493 402 148 0 37 chr13 41124707 41124788 -60748381 + MER2 DNA MER2_type 188 265 -80 353 275 106 12 chr13 41125535 41125695 -60747474 - MER58B DNA MER1_type -1 340 166 2013 126 0 25 chr13 41125700 41126018 -60747151 + AluSx SINE Alu 1 310 -2 2028 135 0 0 chr13 41126032 41126361 -60746808 + AluSx SINE Alu 1 312 0 1450 287 25 14 chr13 41126534 41126973 -60746196 + L1M4 LINE L1 1 444 -6724 308 315 37 0 chr13 41127533 41127641 -60745528 - L2 LINE L2 0 3313 3202 1782 150 41 20 chr13 41127641 41127934 -60745235 + THE1B LTR MaLR 1 299 -65 3735 116 0 4 chr13 41127934 41128461 -60744708 + THE1B-int LTR MaLR 1056 1580 0 2086 160 36 14 chr13 41128461 41128817 -60744352 + THE1B LTR MaLR 1 364 0 440 270 67 11 chr13 41129830 41130008 -60743161 + L2 LINE L2 1773 1960 -1354 1961 181 35 31 chr13 41130008 41130555 -60742614 - MLT2A2 LTR ERVL -2 552 1 1507 347 116 16 chr13 41130562 41130858 -60742311 + L2 LINE L2 1961 2226 -1087 1871 206 23 21 chr13 41130858 41131290 -60741879 + Tigger2a DNA MER2_type 1 433 -1 1507 347 116 16 chr13 41131290 41132176 -60740993 + L2 LINE L2 2226 3269 -44 285 406 0 0 chr13 41132234 41132357 -60740812 + L2 LINE L2 3150 3272 0 21 0 0 0 chr13 41132456 41132477 -60740692 + AT_rich Low_complexity Low_complexity 1 21 0 230 153 222 14 chr13 41132551 41132623 -60740546 + L1MC4 LINE L1 6615 6701 -1341 543 230 18 0 chr13 41132786 41132899 -60740270 - FLAM_A SINE Alu -16 126 12 852 210 26 26 chr13 41133104 41133299 -60739870 + MER67C LTR ERV1 215 409 -301 427 248 99 7 chr13 41133290 41133431 -60739738 + MER67D LTR ERV1 348 501 -13 * 665 279 54 17 chr13 41133439 41133790 -60739379 + L1M4 LINE L1 1646 2009 -5056 * 1573 196 14 14 chr13 41133759 41134117 -60739052 + L1 LINE L1 5783 6140 -1027 3291 75 0 7 chr13 41134117 41134568 -60738601 + LTR7 LTR ERV1 1 448 -2 20539 87 58 31 chr13 41134570 41137771 -60735398 + HERVH LTR ERV1 1 3290 -4423 3359 105 4 4 chr13 41137770 41138264 -60734905 + HERVH LTR ERV1 3500 3993 -3720 * 4029 155 8 1 chr13 41138266 41138924 -60734245 + HERVH LTR ERV1 4488 5149 -2564 1115 122 18 59 chr13 41138913 41139134 -60734035 + HERVH LTR ERV1 5590 5801 -1912 * 266 337 31 0 chr13 41139283 41139381 -60733788 - L2 LINE L2 -243 3070 2970 221 303 221 38 chr13 41139450 41139740 -60733429 - L2 LINE L2 -1444 1870 1528 24 67 0 0 chr13 41142654 41142699 -60730470 + AT_rich Low_complexity Low_complexity 1 45 0 217 217 14 14 chr13 41144783 41144852 -60728317 + (TATG)n Simple_repeat Simple_repeat 3 71 0 1569 205 3 3 chr13 41145040 41145337 -60727832 + AluJo SINE Alu 15 311 -1 455 18 0 0 chr13 41149158 41149213 -60723956 - MLT2A1 LTR ERVL 0 444 390 358 253 0 11 chr13 41149230 41149317 -60723852 + L1MC4 LINE L1 6618 6703 -1339 208 125 0 42 chr13 41149331 41149379 -60723790 + (TA)n Simple_repeat Simple_repeat 1 46 0 2132 103 3 12 chr13 41149391 41149742 -60723427 - MLT2A1 LTR ERVL -45 399 1 642 281 43 13 chr13 41149992 41150227 -60722942 - MER58 DNA MER1_type -2169 251 10 1630 253 82 21 chr13 41150324 41150810 -60722359 - MLT1E2 LTR MaLR 0 626 111 947 264 158 64 chr13 41151154 41151673 -60721496 - MLT1G1 LTR MaLR -27 568 1 566 246 4 95 chr13 41153208 41153440 -60719729 + L2 LINE L2 3088 3298 -15 788 83 16 0 chr13 41153440 41153561 -60719608 + (GGAA)n Simple_repeat Simple_repeat 3 125 0 356 164 31 23 chr13 41153664 41153792 -60719377 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 1777 158 17 0 chr13 41153879 41154170 -60718999 + AluSx SINE Alu 5 300 -12 25 75 0 0 chr13 41155223 41155276 -60717893 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr13 41155748 41155777 -60717392 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 41156197 41156229 -60716940 + AT_rich Low_complexity Low_complexity 1 32 0 36 62 0 0 chr13 41156482 41156546 -60716623 + AT_rich Low_complexity Low_complexity 1 64 0 729 175 0 15 chr13 41157775 41157912 -60715257 + AluSg/x SINE Alu 174 308 -2 2088 192 11 20 chr13 41158119 41158561 -60714608 - MSTA-int LTR MaLR -1212 439 2 1735 164 174 8 chr13 41158562 41158929 -60714240 - MSTA LTR MaLR 0 428 1 1252 273 47 93 chr13 41159112 41159683 -60713486 - MER77 LTR ERV1 -6 599 55 26 64 0 0 chr13 41160301 41160348 -60712821 + AT_rich Low_complexity Low_complexity 1 47 0 26 50 0 0 chr13 41160373 41160413 -60712756 + AT_rich Low_complexity Low_complexity 1 40 0 343 172 11 11 chr13 41161316 41161403 -60711766 + CT-rich Low_complexity Low_complexity 3 89 0 1099 203 90 69 chr13 41161415 41161804 -60711365 - MER39 LTR ERV1 0 707 311 280 206 10 10 chr13 41161985 41162082 -60711087 + CT-rich Low_complexity Low_complexity 4 100 0 589 216 0 0 chr13 41162192 41162303 -60710866 + Tigger5 DNA MER2_type 7 117 -2206 * 940 137 68 0 chr13 41162295 41162456 -60710713 + Tigger5 DNA MER2_type 2152 2323 0 239 330 27 36 chr13 41162592 41162704 -60710465 + L2 LINE L2 2828 2938 -334 1211 120 0 0 chr13 41162756 41162923 -60710246 - AluSg/x SINE Alu -9 303 137 1016 269 101 27 chr13 41163247 41163612 -60709557 - MSTD LTR MaLR -4 392 1 236 294 102 59 chr13 41164473 41164847 -60708322 + Tigger8 DNA MER2_type 112 501 -165 234 0 0 0 chr13 41164863 41164889 -60708280 + (TC)n Simple_repeat Simple_repeat 2 27 0 328 319 30 71 chr13 41165584 41165753 -60707416 - MIR SINE MIR -66 196 35 216 236 0 18 chr13 41165988 41166043 -60707126 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 33 0 0 chr13 41166508 41166538 -60706631 + AT_rich Low_complexity Low_complexity 1 30 0 2150 163 8 5 chr13 41167771 41168145 -60705024 - THE1C LTR MaLR 0 375 1 351 150 0 0 chr13 41168533 41168593 -60704576 + (TA)n Simple_repeat Simple_repeat 1 60 0 292 192 40 61 chr13 41168692 41168791 -60704378 - L1MC4 LINE L1 -1339 6703 6607 527 349 65 9 chr13 41170459 41170691 -60702478 + MIR SINE MIR 17 261 -1 312 207 24 0 chr13 41171466 41171548 -60701621 - L1MA8 LINE L1 -15 6276 6193 23 0 0 0 chr13 41171738 41171761 -60701408 + AT_rich Low_complexity Low_complexity 1 23 0 259 114 0 0 chr13 41172779 41172823 -60700346 - L1PA16 LINE L1 -9 6157 6114 2640 156 39 59 chr13 41173063 41173660 -60699509 + L1MA7 LINE L1 5707 6291 0 347 59 0 20 chr13 41173723 41173774 -60699395 + (GGAA)n Simple_repeat Simple_repeat 2 51 0 588 371 26 12 chr13 41174045 41174390 -60698779 - ERVL LTR ERVL -659 5105 4756 324 176 0 0 chr13 41175019 41175087 -60698082 + GA-rich Low_complexity Low_complexity 1 68 0 512 340 115 24 chr13 41175266 41175719 -60697450 - ERVL LTR ERVL -1287 4367 3874 27 73 0 0 chr13 41176054 41176109 -60697060 + AT_rich Low_complexity Low_complexity 1 55 0 353 345 103 26 chr13 41176358 41176694 -60696475 - ERVL LTR ERVL -2397 3257 2933 505 360 55 25 chr13 41177018 41177454 -60695715 - ERVL LTR ERVL -3112 2542 2094 9046 198 15 22 chr13 41178649 41181386 -60691783 + L1MA6 LINE L1 3347 6060 -240 286 175 18 0 chr13 41181391 41181448 -60691721 + L1MB8 LINE L1 5932 5989 -189 912 148 28 22 chr13 41181922 41182104 -60691065 + L1MB8 LINE L1 5996 6178 0 1043 257 79 14 chr13 41183674 41183751 -60689418 + MLT1B LTR MaLR 1 72 -318 2205 122 0 0 chr13 41183751 41184054 -60689115 - AluSx SINE Alu -9 303 1 1043 257 79 14 chr13 41184054 41184342 -60688827 + MLT1B LTR MaLR 72 390 0 232 218 64 26 chr13 41184342 41184420 -60688749 - L1ME3A LINE L1 -13 6157 6077 2500 143 44 5 chr13 41184485 41184897 -60688272 - MSTA LTR MaLR 0 428 1 8020 188 28 21 chr13 41184897 41186537 -60686632 - MSTA-int LTR MaLR 0 1651 1 1128 122 18 95 chr13 41186537 41186606 -60686563 - MSTA LTR MaLR 0 428 355 2039 101 0 4 chr13 41186606 41186873 -60686296 + AluSc SINE Alu 37 302 -7 1128 122 18 95 chr13 41186873 41187025 -60686144 - MSTA LTR MaLR -73 355 224 701 111 0 0 chr13 41187034 41187133 -60686036 - MSTA LTR MaLR -329 99 1 1428 301 44 9 chr13 41187230 41187755 -60685414 - L1ME3A LINE L1 -258 5912 5370 401 196 127 82 chr13 41191424 41191582 -60681587 + MLT1J LTR MaLR 6 170 -341 560 319 62 36 chr13 41192141 41192477 -60680692 + MLT1J LTR MaLR 167 511 0 229 241 19 0 chr13 41192949 41193003 -60680166 + MLT1J1 LTR MaLR 84 138 -308 389 378 63 13 chr13 41193857 41194156 -60679013 + L1MEd LINE L1 350 663 -5456 928 253 52 57 chr13 41194166 41194534 -60678635 - MER74B LTR ERVL -68 554 189 2967 175 38 4 chr13 41195504 41196063 -60677106 + HSMAR2 DNA Mariner 718 1295 -7 1206 249 62 14 chr13 41196095 41196452 -60676717 - MLT1A2 LTR MaLR 0 374 1 623 209 0 0 chr13 41196587 41196721 -60676448 - L1PB3 LINE L1 -2285 3861 3728 * 3271 225 9 10 chr13 41196717 41197513 -60675656 + L1PB3 LINE L1 3891 4685 -1461 2595 165 41 6 chr13 41197614 41198104 -60675065 + L1PB3 LINE L1 5644 6150 -4 313 348 32 32 chr13 41198372 41198527 -60674642 + MIR SINE MIR 5 159 -103 37 39 0 0 chr13 41198725 41198776 -60674393 + AT_rich Low_complexity Low_complexity 1 51 0 232 317 41 55 chr13 41199293 41199438 -60673731 - MIR SINE MIR -72 190 48 4521 174 35 11 chr13 41199584 41200430 -60672739 + L1P3 LINE L1 1 867 -5008 * 5108 165 2 2 chr13 41200418 41201313 -60671856 + L1P3 LINE L1 1742 2636 -3825 1810 217 36 20 chr13 41201413 41201855 -60671314 + L1P3 LINE L1 419 867 -5008 * 10699 158 11 6 chr13 41201843 41203743 -60669426 + L1P3 LINE L1 1742 3650 -2811 26 74 0 0 chr13 41205961 41206015 -60667154 + AT_rich Low_complexity Low_complexity 1 54 0 1756 153 177 11 chr13 41206150 41206517 -60666652 + MSTA LTR MaLR 1 428 0 1388 236 73 47 chr13 41207036 41207528 -60665641 + MLT1D LTR MaLR 1 505 0 327 25 0 0 chr13 41208627 41208667 -60664502 + (CA)n Simple_repeat Simple_repeat 2 41 0 32 0 0 0 chr13 41208789 41208821 -60664348 + AT_rich Low_complexity Low_complexity 1 32 0 354 23 0 0 chr13 41209296 41209339 -60663830 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 41210350 41210371 -60662798 + AT_rich Low_complexity Low_complexity 1 21 0 190 382 82 0 chr13 41211185 41211295 -60661874 - L2 LINE L2 -6 3266 3148 356 304 83 24 chr13 41211302 41211470 -60661699 + MIR SINE MIR 15 192 -70 21 0 0 0 chr13 41211593 41211614 -60661555 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 41214476 41214500 -60658669 + AT_rich Low_complexity Low_complexity 1 24 0 779 168 0 15 chr13 41214876 41215013 -60658156 - AluSg/x SINE Alu -2 310 176 189 0 0 0 chr13 41215308 41215329 -60657840 + (TC)n Simple_repeat Simple_repeat 2 22 0 388 162 19 45 chr13 41215329 41215483 -60657686 + (TA)n Simple_repeat Simple_repeat 2 151 0 2050 200 54 7 chr13 41215585 41215990 -60657179 - MSTB LTR MaLR 0 426 3 7001 195 65 33 chr13 41215996 41217592 -60655577 - MSTB-int LTR MaLR -4 1647 1 1509 254 59 5 chr13 41217592 41217998 -60655171 - MSTA LTR MaLR 0 428 1 2575 52 0 0 chr13 41218166 41218476 -60654693 - AluY SINE Alu -1 310 1 357 316 75 32 chr13 41218537 41218724 -60654445 + MIR SINE MIR 50 244 -18 1020 263 49 42 chr13 41218902 41219328 -60653841 - MER110A LTR ERV1 0 468 40 3901 280 70 44 chr13 41219620 41221391 -60651778 - MER110-int LTR ERV1 -458 4189 2373 1102 193 89 55 chr13 41221505 41221831 -60651338 + MER2 DNA MER2_type 9 345 0 1146 311 68 54 chr13 41221850 41222262 -60650907 - MER110-int LTR ERV1 -2441 2206 1801 1728 155 58 22 chr13 41222262 41222624 -60650545 - THE1C LTR MaLR 0 375 1 1146 311 68 54 chr13 41222624 41222762 -60650407 - MER110-int LTR ERV1 -2846 1801 1666 2380 90 0 3 chr13 41222762 41223072 -60650097 - AluSx SINE Alu 0 312 4 1146 311 68 54 chr13 41223072 41223333 -60649836 - MER110-int LTR ERV1 -2981 1666 1383 481 370 46 27 chr13 41223425 41223863 -60649306 - MER110-int LTR ERV1 -3244 3557 3112 572 296 90 85 chr13 41224072 41224683 -60648486 - MER110-int LTR ERV1 -3868 779 166 2837 254 43 23 chr13 41224716 41225957 -60647212 - L1MEc LINE L1 -2029 4186 2922 491 308 0 0 chr13 41225957 41226087 -60647082 + Tigger3(Golem) DNA MER2_type 1 130 -2899 1278 188 33 0 chr13 41226147 41226387 -60646782 + Tigger3(Golem) DNA MER2_type 2782 3029 0 1562 249 87 41 chr13 41226417 41227379 -60645790 - L1MEc LINE L1 -3324 2891 1922 1909 76 0 4 chr13 41227384 41227647 -60645522 + LTR7 LTR ERV1 1 262 -188 216 0 0 0 chr13 41327740 41327764 -60545405 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2029 154 3 0 chr13 41327993 41328304 -60544865 - AluSx SINE Alu 0 312 1 187 277 181 32 chr13 41328582 41328676 -60544493 + L3 LINE CR1 1447 1554 -23 261 128 0 0 chr13 41329554 41329601 -60543568 + (TC)n Simple_repeat Simple_repeat 2 48 0 2336 94 0 0 chr13 41329873 41330182 -60542987 + AluSg SINE Alu 1 309 -1 213 235 0 0 chr13 41330265 41330316 -60542853 + (TA)n Simple_repeat Simple_repeat 2 52 0 231 280 60 60 chr13 41330892 41330992 -60542177 + MIR SINE MIR 3 102 -160 607 277 69 5 chr13 41330994 41331196 -60541973 + MER58A DNA MER1_type 9 223 -1 493 266 57 6 chr13 41331196 41331354 -60541815 + MIR SINE MIR 97 262 0 187 51 0 51 chr13 41331452 41331491 -60541678 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr13 41334347 41334372 -60538797 + AT_rich Low_complexity Low_complexity 1 25 0 291 139 0 14 chr13 41334900 41334957 -60538212 + MLT2B1 LTR ERVL 399 518 -2 180 347 27 82 chr13 41335142 41335289 -60537880 - L2 LINE L2 -237 3035 2897 1413 168 25 35 chr13 41335579 41335864 -60537305 + AluJo SINE Alu 21 302 -10 22 35 0 0 chr13 41336175 41336204 -60536965 + AT_rich Low_complexity Low_complexity 1 29 0 728 126 34 6 chr13 41337502 41337677 -60535492 + (TA)n Simple_repeat Simple_repeat 1 180 0 229 219 85 0 chr13 41337688 41337770 -60535399 + L1MC4 LINE L1 6615 6703 -1339 408 82 52 10 chr13 41337773 41337870 -60535299 + (TA)n Simple_repeat Simple_repeat 2 102 0 255 109 0 36 chr13 41337873 41337928 -60535241 - LTR66 LTR ERVL -171 439 387 25 0 0 0 chr13 41338637 41338662 -60534507 + AT_rich Low_complexity Low_complexity 1 25 0 275 312 0 13 chr13 41338784 41338861 -60534308 - MIR SINE MIR -105 157 82 346 318 69 12 chr13 41338895 41339068 -60534101 + L2 LINE L2 2477 2659 -655 2377 192 16 5 chr13 41339123 41339550 -60533619 + MLT2B1 LTR ERVL 3 434 -86 10217 166 34 41 chr13 41339551 41341545 -60531624 + ERVL-B1 LTR ERVL 3779 5758 -6 2242 209 46 28 chr13 41341545 41341999 -60531170 + MLT2B1 LTR ERVL 9 474 -46 879 17 26 0 chr13 41341999 41342116 -60531053 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 2242 209 46 28 chr13 41342116 41342164 -60531005 + MLT2B1 LTR ERVL 474 520 0 618 260 49 116 chr13 41342177 41342747 -60530422 + L2 LINE L2 2713 3313 0 1658 193 3 3 chr13 41342940 41343236 -60529933 + AluJb SINE Alu 1 296 -16 623 352 60 17 chr13 41343656 41344008 -60529161 - L2 LINE L2 0 3313 2947 434 371 96 30 chr13 41344064 41344471 -60528698 - L2 LINE L2 -434 2880 2447 248 279 111 71 chr13 41344642 41345506 -60527663 + L1M4 LINE L1 3705 4598 -1548 726 283 87 25 chr13 41345551 41345919 -60527250 + L1MC4 LINE L1 6698 7088 -954 770 207 7 0 chr13 41346219 41346364 -60526805 + FRAM SINE Alu 1 146 -30 252 0 0 0 chr13 41346443 41346471 -60526698 + (CA)n Simple_repeat Simple_repeat 2 29 0 328 127 0 28 chr13 41346486 41346557 -60526612 + (TA)n Simple_repeat Simple_repeat 1 69 0 461 47 16 0 chr13 41346559 41346623 -60526546 + (CA)n Simple_repeat Simple_repeat 2 66 0 1745 112 0 68 chr13 41346623 41346917 -60526252 - AluSx SINE Alu -38 274 1 226 281 129 0 chr13 41347232 41347410 -60525759 + L1MC4 LINE L1 7841 8041 -1 2410 176 31 0 chr13 41347453 41347907 -60525262 - L1 LINE L1 -914 5232 4765 25 51 0 0 chr13 41347937 41347976 -60525193 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 41348394 41348417 -60524752 + AT_rich Low_complexity Low_complexity 1 23 0 691 320 30 9 chr13 41348619 41348850 -60524319 - MIR SINE MIR -24 238 3 238 249 378 16 chr13 41349957 41350142 -60523027 + MIR SINE MIR 2 253 -9 786 239 43 14 chr13 41350279 41350488 -60522681 + MER20 DNA MER1_type 5 219 0 208 349 121 12 chr13 41350548 41350631 -60522538 - L2 LINE L2 -30 3242 3151 270 0 0 0 chr13 41353202 41353232 -60519937 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 3106 153 17 25 chr13 41356212 41356743 -60516426 + MER1A DNA MER1_type 1 527 0 393 330 126 38 chr13 41357024 41357421 -60515748 + L3 LINE CR1 982 1413 -164 250 157 0 0 chr13 41358212 41358263 -60514906 + L1MC4 LINE L1 6653 6703 -1339 328 275 0 42 chr13 41358269 41358413 -60514756 - L1MC4 LINE L1 -1339 6703 6614 784 274 11 0 chr13 41358466 41358645 -60514524 - MER63A DNA MER1_type -16 194 14 21 36 0 0 chr13 41359725 41359753 -60513416 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr13 41359998 41360041 -60513128 + (TG)n Simple_repeat Simple_repeat 2 44 0 200 205 0 0 chr13 41360545 41360584 -60512585 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr13 41361036 41361062 -60512107 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 41361102 41361127 -60512042 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 41361821 41361845 -60511324 + AT_rich Low_complexity Low_complexity 1 24 0 325 358 180 16 chr13 41362741 41363168 -60510001 - L2 LINE L2 -739 2575 2079 220 150 50 17 chr13 41363546 41363606 -60509563 + (TA)n Simple_repeat Simple_repeat 1 62 0 1040 162 40 0 chr13 41364119 41364317 -60508852 - L1MA4A LINE L1 -4 6299 6094 3371 151 19 62 chr13 41364121 41364579 -60508590 - L1MA4A LINE L1 -6 6297 5878 1538 108 0 5 chr13 41364579 41364793 -60508376 + AluSg/x SINE Alu 91 303 -9 3371 151 19 62 chr13 41364793 41365030 -60508139 - L1MA4A LINE L1 -425 5878 5632 1981 142 16 13 chr13 41365031 41365167 -60508002 + AluSx SINE Alu 1 135 -201 2500 62 0 0 chr13 41365167 41365472 -60507697 + AluY SINE Alu 1 305 -6 1981 142 16 13 chr13 41365472 41365670 -60507499 + AluSx SINE Alu 135 336 0 1960 152 2 74 chr13 41365671 41366208 -60506961 - L1MA4A LINE L1 -661 5642 5144 1877 164 15 1 chr13 41366217 41366521 -60506648 + THE1B LTR MaLR 66 364 0 12415 213 32 29 chr13 41366524 41367721 -60505448 - L1 LINE L1 -1000 5848 4655 1692 181 7 3 chr13 41367721 41368019 -60505150 - AluJo SINE Alu -13 299 1 12415 213 32 29 chr13 41368019 41371004 -60502165 - L1 LINE L1 -2193 4655 1642 1342 257 189 56 chr13 41371012 41371344 -60501825 - L1 LINE L1 -5868 981 695 216 0 0 0 chr13 41371344 41371368 -60501801 + (CAG)n Simple_repeat Simple_repeat 1 24 0 1342 257 189 56 chr13 41371368 41371762 -60501407 - L1 LINE L1 -6154 695 10 621 251 16 11 chr13 41372554 41372745 -60500424 + Charlie2 DNA MER1_type 1859 2050 -812 2028 257 31 21 chr13 41373865 41374383 -60498786 + MLT1F LTR MaLR 11 533 -9 631 280 79 5 chr13 41374981 41375170 -60497999 - MIR SINE MIR -6 256 54 19124 183 29 43 chr13 41375222 41376361 -60496808 - L1P3 LINE L1 -1481 5367 4214 2070 123 7 0 chr13 41376361 41376654 -60496515 - AluSp SINE Alu -18 295 1 19124 183 29 43 chr13 41376654 41380513 -60492656 - L1P3 LINE L1 -2634 4214 2 1400 183 63 22 chr13 41380520 41380947 -60492222 + Tigger7 DNA MER2_type 107 2487 0 260 261 7 35 chr13 41380959 41381042 -60492127 + (TA)n Simple_repeat Simple_repeat 2 81 -58 1752 175 10 14 chr13 41381042 41381334 -60491835 - AluJb SINE Alu -21 291 1 260 261 7 35 chr13 41381334 41381392 -60491777 + (TA)n Simple_repeat Simple_repeat 81 139 0 985 288 115 29 chr13 41381392 41381485 -60491684 + L1MC4 LINE L1 6615 6699 -1343 217 0 61 0 chr13 41381485 41381518 -60491651 + (TA)n Simple_repeat Simple_repeat 2 36 0 985 288 115 29 chr13 41381518 41381828 -60491341 + L1MC4 LINE L1 6699 6981 -1061 1555 167 62 69 chr13 41381828 41381867 -60491302 - MLT1B LTR MaLR -3 387 349 2213 74 0 23 chr13 41381867 41382177 -60490992 + AluY SINE Alu 1 303 -8 1555 167 62 69 chr13 41382177 41382527 -60490642 - MLT1B LTR MaLR -41 349 1 985 288 115 29 chr13 41382527 41383109 -60490060 + L1MC4 LINE L1 6981 7869 -173 373 348 38 45 chr13 41383524 41383811 -60489358 - L1ME3 LINE L1 -324 5838 5554 392 351 48 0 chr13 41383940 41384108 -60489061 - L1ME3 LINE L1 -1050 5096 4921 345 318 113 15 chr13 41384260 41384455 -60488714 + L1M4 LINE L1 4127 4340 -1806 343 189 27 81 chr13 41384517 41384628 -60488541 + L1MA8 LINE L1 6180 6284 -7 2221 114 3 0 chr13 41384769 41385075 -60488094 - AluSx SINE Alu -5 307 1 686 269 24 12 chr13 41386466 41386633 -60486536 - MER45A DNA AcHobo 0 178 10 2493 61 0 0 chr13 41387256 41387567 -60485602 + AluY SINE Alu 1 311 0 30 0 0 0 chr13 41387817 41387847 -60485322 + AT_rich Low_complexity Low_complexity 1 30 0 570 288 137 32 chr13 41388007 41388568 -60484601 - L1ME4a LINE L1 -1 6054 5439 272 266 0 21 chr13 41389131 41389225 -60483944 - L1ME4a LINE L1 -2203 3877 3786 26 30 0 0 chr13 41389738 41389771 -60483398 + AT_rich Low_complexity Low_complexity 1 33 0 68 13 0 0 chr13 41389788 41389863 -60483306 + AT_rich Low_complexity Low_complexity 1 75 0 409 44 125 0 chr13 41389868 41390028 -60483141 + (TA)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr13 41390031 41390054 -60483115 + AT_rich Low_complexity Low_complexity 1 23 0 281 195 87 0 chr13 41390056 41390205 -60482964 + (TATAA)n Simple_repeat Simple_repeat 2 163 0 25 0 0 0 chr13 41390425 41390450 -60482719 + AT_rich Low_complexity Low_complexity 1 25 0 391 294 114 16 chr13 41390578 41390762 -60482407 - MLT1J2 LTR MaLR -2 448 247 24 67 0 0 chr13 41390861 41390906 -60482263 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr13 41393378 41393401 -60479768 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 937 276 12 12 chr13 41393409 41393659 -60479510 - MIR SINE MIR -11 251 2 320 214 0 0 chr13 41393846 41393921 -60479248 - L1ME LINE L1 -4179 1941 1827 716 284 75 39 chr13 41393969 41394962 -60478207 - L1ME LINE L1 -4482 1779 703 203 221 0 29 chr13 41395348 41395416 -60477753 + (TAA)n Simple_repeat Simple_repeat 1 66 0 23 0 0 0 chr13 41395469 41395492 -60477677 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr13 41396382 41396425 -60476744 + AT_rich Low_complexity Low_complexity 1 43 0 376 271 179 33 chr13 41397936 41398087 -60475082 + MER5A DNA MER1_type 11 183 -6 1096 309 63 34 chr13 41398188 41398742 -60474427 + L1MA6 LINE L1 12 581 -6208 12695 223 44 20 chr13 41398904 41404143 -60469026 + L1MA6 LINE L1 1121 6144 -743 927 153 6 6 chr13 41404156 41404313 -60468856 + FRAM SINE Alu 12 168 -8 3952 158 70 20 chr13 41404319 41405079 -60468090 + L1MA6 LINE L1 6142 6939 -3 36 0 0 0 chr13 41405086 41405122 -60468047 + AT_rich Low_complexity Low_complexity 1 36 0 1105 305 100 12 chr13 41407881 41408463 -60464706 - L2 LINE L2 -171 3142 2508 3439 34 25 0 chr13 41408463 41408902 -60464267 - L1PA5 LINE L1 -765 5381 4932 6313 38 3 11 chr13 41408902 41409686 -60463483 + L1PA5 LINE L1 5378 6154 0 749 265 143 7 chr13 41409698 41409985 -60463184 - L2 LINE L2 -834 2480 2155 207 146 49 0 chr13 41410389 41410430 -60462739 + (AATAG)n Simple_repeat Simple_repeat 4 46 0 281 224 158 0 chr13 41410594 41410670 -60462499 + MIR3 SINE MIR 121 208 0 1069 164 38 0 chr13 41411524 41411737 -60461432 + L1MA8 LINE L1 6070 6290 -1 373 295 36 7 chr13 41412100 41412239 -60460930 + MER112 DNA MER1_type 1 143 -117 212 59 29 0 chr13 41412258 41412292 -60460877 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 218 200 22 0 chr13 41413045 41413090 -60460079 - L2 LINE L2 0 3313 3268 366 235 68 23 chr13 41413471 41413603 -60459566 - LTR27 LTR ERV1 0 636 499 2263 213 28 15 chr13 41413674 41414196 -60458973 - LTR27 LTR ERV1 -140 496 1 242 252 43 101 chr13 41414292 41414431 -60458738 - MER5A DNA MER1_type -18 171 41 233 373 19 31 chr13 41414299 41414460 -60458709 + MER5A DNA MER1_type 31 189 0 * 384 281 100 52 chr13 41414579 41414810 -60458359 + MIR SINE MIR 20 261 -1 622 316 30 17 chr13 41414843 41415074 -60458095 + MIR SINE MIR 13 246 -16 865 230 93 80 chr13 41415814 41416440 -60456729 + MER52A LTR ERV1 270 738 -282 538 306 43 27 chr13 41416508 41416694 -60456475 + MER52A LTR ERV1 1221 1409 -346 542 271 0 54 chr13 41416765 41416931 -60456238 + MER52A LTR ERV1 1599 1755 0 258 293 198 22 chr13 41416964 41417186 -60455983 + L2 LINE L2 2609 2869 -445 300 333 94 83 chr13 41417297 41417362 -60455807 + L2 LINE L2 2994 3057 -215 1631 146 46 0 chr13 41417362 41417622 -60455547 + AluSx SINE Alu 21 292 -20 300 333 94 83 chr13 41417622 41417832 -60455337 + L2 LINE L2 3057 3272 0 679 159 0 0 chr13 41418851 41418958 -60454211 - FLAM_C SINE Alu -7 136 30 186 43 0 0 chr13 41419025 41419048 -60454121 + (T)n Simple_repeat Simple_repeat 1 23 0 199 360 85 20 chr13 41419080 41419233 -60453936 + L3 LINE CR1 1341 1503 -74 689 307 28 5 chr13 41420583 41420795 -60452374 - MER58A DNA MER1_type 0 224 8 22 56 0 0 chr13 41421685 41421721 -60451448 + AT_rich Low_complexity Low_complexity 1 36 0 587 354 111 27 chr13 41422254 41423099 -60450070 - L2 LINE L2 -61 3252 2328 486 61 0 0 chr13 41424096 41424162 -60449007 + (TC)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr13 41424162 41424202 -60448967 + (TA)n Simple_repeat Simple_repeat 1 40 0 1991 188 14 80 chr13 41424258 41424544 -60448625 + MSTB2 LTR MaLR 1 304 -153 3729 132 57 79 chr13 41424544 41425346 -60447823 + LTR1 LTR ERV1 1 785 0 1991 188 14 80 chr13 41425346 41425366 -60447803 + MSTB2 LTR MaLR 304 324 -133 1873 165 10 0 chr13 41425366 41425663 -60447506 - AluSx SINE Alu -12 300 1 1991 188 14 80 chr13 41425663 41425844 -60447325 + MSTB2 LTR MaLR 324 457 0 316 228 188 10 chr13 41426241 41426342 -60446827 - L1 LINE L1 -2739 3407 3289 1223 263 31 31 chr13 41426420 41426835 -60446334 - LTR52 LTR ERVL -3 418 4 182 37 37 0 chr13 41426964 41426991 -60446178 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 27 62 0 0 chr13 41427439 41427487 -60445682 + AT_rich Low_complexity Low_complexity 1 48 0 308 328 8 8 chr13 41427877 41428005 -60445164 - MER94 DNA DNA -5 129 2 250 315 36 18 chr13 41428099 41428210 -60444959 - MIR SINE MIR -103 159 47 1583 158 8 8 chr13 41428629 41428889 -60444280 + MER4E LTR ERV1 520 779 0 232 304 68 99 chr13 41430048 41430209 -60442960 - L2 LINE L2 -1 3271 3116 279 295 170 67 chr13 41431026 41431250 -60441919 - MIR SINE MIR -10 252 6 246 105 0 0 chr13 41431381 41431419 -60441750 + (ATG)n Simple_repeat Simple_repeat 2 39 0 663 306 15 0 chr13 41431428 41431624 -60441545 - MIR SINE MIR -15 247 49 3201 212 60 27 chr13 41431976 41432793 -60440376 - L1MA9 LINE L1 -40 6272 5429 180 241 74 0 chr13 41433015 41433069 -60440100 + L2 LINE L2 3256 3313 0 229 204 0 0 chr13 41433069 41433118 -60440051 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 729 234 43 5 chr13 41433430 41433614 -60439555 - MER3 DNA MER1_type -18 191 1 1474 186 94 0 chr13 41434137 41434465 -60438704 + MER46B DNA MER2_type 3 236 0 222 241 78 103 chr13 41436702 41436818 -60436351 - L2 LINE L2 -2 3270 3158 2231 92 0 0 chr13 41436926 41437233 -60435936 - AluSx SINE Alu 0 307 1 207 0 0 0 chr13 41437239 41437262 -60435907 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2217 121 38 3 chr13 41437329 41437660 -60435509 - THE1A LTR MaLR -18 408 3 7607 170 52 46 chr13 41437662 41439301 -60433868 - MST-int LTR MaLR 0 1651 3 2131 101 38 71 chr13 41439303 41439670 -60433499 - THE1A LTR MaLR 0 355 1 219 385 88 5 chr13 41441125 41441317 -60431852 + MIR SINE MIR 53 260 -2 13498 146 37 6 chr13 41441591 41443934 -60429235 - Tigger1 DNA MER2_type -3 2415 1 1947 130 3 7 chr13 41445130 41445460 -60427709 + AluSq SINE Alu 1 329 0 33 0 0 0 chr13 41445526 41445559 -60427610 + AT_rich Low_complexity Low_complexity 1 33 0 200 189 0 0 chr13 41447035 41447072 -60426097 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 32 0 0 chr13 41449018 41449049 -60424120 + AT_rich Low_complexity Low_complexity 1 31 0 308 340 19 13 chr13 41450095 41450254 -60422915 + MIR SINE MIR 88 247 -15 202 178 0 27 chr13 41450269 41450342 -60422827 + T-rich Low_complexity Low_complexity 2 72 0 803 180 86 99 chr13 41450354 41450576 -60422593 + MER20 DNA MER1_type 1 219 0 351 289 60 40 chr13 41450970 41451171 -60421998 + LTR40c LTR ERVL 167 371 -94 186 43 0 0 chr13 41454712 41454735 -60418434 + (CA)n Simple_repeat Simple_repeat 2 24 0 446 0 19 0 chr13 41454735 41454751 -60418418 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 446 0 19 0 chr13 41454751 41454805 -60418364 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1760 150 87 3 chr13 41454811 41455144 -60418025 - MER46B DNA MER2_type 0 236 1 16293 170 23 49 chr13 41456474 41458111 -60415058 + L1PA7 LINE L1 3 1682 -5167 3414 136 22 22 chr13 41458111 41458699 -60414470 - LTR4 LTR ERV1 0 588 1 16293 170 23 49 chr13 41458699 41459157 -60414012 + L1PA7 LINE L1 1682 2151 -4698 1501 211 7 10 chr13 41459157 41459455 -60413714 - AluJb SINE Alu -15 297 1 16293 170 23 49 chr13 41459455 41460206 -60412963 + L1PA7 LINE L1 2151 2740 -4109 3410 147 21 0 chr13 41460206 41460722 -60412447 - MER1A DNA MER1_type 0 527 1 16293 170 23 49 chr13 41460722 41461538 -60411631 + L1PA7 LINE L1 2740 3576 -3273 7338 195 54 25 chr13 41461531 41461604 -60411565 + L1PA7 LINE L1 4119 4188 -2681 * 180 0 0 0 chr13 41461604 41461624 -60411545 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7338 195 54 25 chr13 41461624 41463385 -60409784 + L1PA7 LINE L1 4188 6052 -817 3258 81 0 5 chr13 41463385 41463829 -60409340 + L1PA7 LINE L1 6413 6854 -3 7338 195 54 25 chr13 41463829 41464261 -60408908 + L1PA7 LINE L1 6052 6470 -399 471 267 50 44 chr13 41465093 41465273 -60407896 + MIR SINE MIR 82 262 0 367 315 35 54 chr13 41466991 41467251 -60405918 + LTR33 LTR ERVL 21 275 -246 231 179 0 0 chr13 41467278 41467317 -60405852 + tRNA-Thr-ACT tRNA tRNA 2 40 -37 232 301 48 60 chr13 41467319 41467485 -60405684 + LTR33 LTR ERVL 345 508 -13 2026 187 48 34 chr13 41467615 41468045 -60405124 - MSTB1 LTR MaLR 0 432 2 507 359 28 42 chr13 41468417 41468704 -60404465 - LTR16C LTR ERVL -60 431 149 341 359 19 19 chr13 41469845 41470001 -60403168 + ERVL LTR ERVL 1531 1686 -4078 404 341 53 16 chr13 41470080 41470326 -60402843 + ERVL LTR ERVL 1744 1998 -3487 490 318 71 0 chr13 41470479 41470677 -60402492 + ERVL LTR ERVL 2292 2503 -3261 728 309 83 17 chr13 41470702 41471110 -60402059 + LTR16A1 LTR ERVL 10 444 -13 829 350 63 20 chr13 41471310 41471799 -60401370 + ERVL LTR ERVL 4518 5027 -737 2026 101 19 35 chr13 41472084 41472097 -60401072 - AluSx SINE Alu 0 312 300 240 35 0 0 chr13 41472097 41472126 -60401043 + (TC)n Simple_repeat Simple_repeat 2 30 0 2026 101 19 35 chr13 41472126 41472429 -60400740 - AluSx SINE Alu -12 300 1 7150 142 44 24 chr13 41472952 41474227 -60398942 - HSMAR2 DNA Mariner -1 1301 2 26 0 0 0 chr13 41474465 41474491 -60398678 + AT_rich Low_complexity Low_complexity 1 26 0 1485 188 16 43 chr13 41474667 41474971 -60398198 + AluJo SINE Alu 1 296 -16 242 287 17 44 chr13 41475431 41475612 -60397557 + CT-rich Low_complexity Low_complexity 2 177 0 220 232 36 0 chr13 41476243 41476299 -60396870 + (CTA)n Simple_repeat Simple_repeat 1 58 0 27 0 0 0 chr13 41476860 41476887 -60396282 + AT_rich Low_complexity Low_complexity 1 27 0 481 118 0 13 chr13 41476887 41476963 -60396206 - tRNA-Glu-GAG tRNA tRNA 0 75 1 7443 33 1 1 chr13 41476969 41478113 -60395056 + L1PA4 LINE L1 5009 6152 -3 29 28 0 0 chr13 41478214 41478250 -60394919 + AT_rich Low_complexity Low_complexity 1 36 0 213 132 0 0 chr13 41478956 41478994 -60394175 + (CTA)n Simple_repeat Simple_repeat 1 38 0 237 65 0 0 chr13 41479073 41479104 -60394065 + (TATG)n Simple_repeat Simple_repeat 4 34 0 21 0 0 0 chr13 41479130 41479151 -60394018 + AT_rich Low_complexity Low_complexity 1 21 0 2321 271 48 34 chr13 41479172 41480036 -60393133 + L1M4c LINE L1 1001 1851 -4531 2360 93 3 0 chr13 41480036 41480336 -60392833 + AluSp SINE Alu 1 301 -12 2321 271 48 34 chr13 41480336 41480661 -60392508 + L1M4c LINE L1 1851 2170 -4212 2177 88 0 0 chr13 41480661 41480933 -60392236 + AluSc SINE Alu 38 309 0 2321 271 48 34 chr13 41480933 41481222 -60391947 + L1M4c LINE L1 2170 2572 -3810 2209 202 56 0 chr13 41481229 41481344 -60391825 + L1MB1 LINE L1 5661 5768 -400 381 93 0 0 chr13 41481344 41481398 -60391771 + (TA)n Simple_repeat Simple_repeat 1 54 0 2209 202 56 0 chr13 41481398 41481763 -60391406 + L1MB1 LINE L1 5768 6168 0 22 0 0 0 chr13 41482507 41482529 -60390640 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chr13 41483692 41483744 -60389425 + AT_rich Low_complexity Low_complexity 1 52 0 1431 196 55 149 chr13 41483907 41484476 -60388693 + MLT2B3 LTR ERVL 1 622 68 402 21 0 0 chr13 41484476 41484523 -60388646 + (CA)n Simple_repeat Simple_repeat 1 47 0 198 0 0 0 chr13 41484522 41484544 -60388625 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 1431 196 55 149 chr13 41484523 41484577 -60388592 + MLT2B3 LTR ERVL 621 546 -8 22 0 0 0 chr13 41484702 41484724 -60388445 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr13 41485014 41485044 -60388125 + AT_rich Low_complexity Low_complexity 1 30 0 246 62 0 0 chr13 41485137 41485169 -60388000 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 267 31 0 0 chr13 41485168 41485200 -60387969 + (GA)n Simple_repeat Simple_repeat 1 32 0 13122 161 19 26 chr13 41485653 41485697 -60387472 + Tigger1 DNA MER2_type 14 57 -2361 2028 122 34 0 chr13 41485697 41485991 -60387178 - AluY SINE Alu -7 304 1 13122 161 19 26 chr13 41485991 41488148 -60385021 + Tigger1 DNA MER2_type 57 2198 -220 1895 160 3 13 chr13 41488148 41488461 -60384708 - AluSx SINE Alu -1 311 2 13122 161 19 26 chr13 41488461 41488674 -60384495 + Tigger1 DNA MER2_type 2198 2411 -7 569 235 25 0 chr13 41489512 41489631 -60383538 + FLAM_A SINE Alu 4 125 -8 39 60 0 0 chr13 41490401 41490468 -60382701 + AT_rich Low_complexity Low_complexity 1 67 0 618 314 16 48 chr13 41490591 41490839 -60382330 - MIR SINE MIR 0 262 23 207 120 114 0 chr13 41492332 41492490 -60380679 + (TA)n Simple_repeat Simple_repeat 1 176 0 23 54 0 0 chr13 41493718 41493755 -60379414 + AT_rich Low_complexity Low_complexity 1 37 0 7889 86 5 7 chr13 41495140 41496213 -60376956 - MER11C LTR ERVK 0 1071 1 6012 110 8 11 chr13 41496272 41497954 -60375215 + L1PA12 LINE L1 4469 6166 -2 391 282 41 6 chr13 41498747 41498917 -60374252 - L1MEd LINE L1 -4971 1148 973 2241 120 0 10 chr13 41499636 41499944 -60373225 - AluSx SINE Alu -7 305 1 1151 239 19 69 chr13 41501148 41501525 -60371644 - MLT1E1 LTR MaLR 0 654 297 336 211 14 14 chr13 41501549 41501620 -60371549 - MLT1E1 LTR MaLR -541 113 43 2399 78 0 0 chr13 41502467 41502761 -60370408 + AluSc SINE Alu 1 294 -15 23 0 0 0 chr13 41503201 41503224 -60369945 + AT_rich Low_complexity Low_complexity 1 23 0 338 138 35 11 chr13 41503407 41503494 -60369675 + GA-rich Low_complexity Low_complexity 3 91 0 431 331 100 56 chr13 41503579 41504111 -60369058 + L1MEd LINE L1 524 1078 -5041 1354 330 130 49 chr13 41505969 41507569 -60365600 - L2 LINE L2 -370 2944 1216 380 271 43 105 chr13 41509611 41509962 -60363207 - L1ME LINE L1 -359 5811 5483 364 277 123 68 chr13 41510087 41510484 -60362685 - L1ME LINE L1 -824 5322 4904 339 239 0 0 chr13 41510744 41510815 -60362354 + MIR SINE MIR 20 90 -172 236 213 33 0 chr13 41510931 41510992 -60362177 - L1MC4 LINE L1 -1340 6702 6640 407 281 23 74 chr13 41511002 41511219 -60361950 + Charlie2 DNA MER1_type 113 318 -2464 1849 242 39 74 chr13 41511223 41511409 -60361760 + Charlie2 DNA MER1_type 1865 2056 -806 2778 236 29 20 chr13 41511409 41512091 -60361078 + MER76 LTR ERV 1 688 0 1849 242 39 74 chr13 41512091 41512937 -60360232 + Charlie2 DNA MER1_type 2056 2861 -1 544 269 110 16 chr13 41513269 41513665 -60359504 - LTR33 LTR ERVL -4 517 59 23 0 0 0 chr13 41513870 41513893 -60359276 + AT_rich Low_complexity Low_complexity 1 23 0 1967 170 20 3 chr13 41514102 41514444 -60358725 - MER7A DNA MER2_type 0 346 1 584 137 218 19 chr13 41514445 41514656 -60358513 - MER33 DNA MER1_type -38 286 34 1866 96 0 26 chr13 41514959 41515230 -60357939 + AluSc SINE Alu 36 299 -10 1285 226 3 0 chr13 41515346 41515633 -60357536 - L1MB7 LINE L1 -16 6168 5881 1198 187 49 16 chr13 41515635 41515881 -60357288 - MSTB LTR MaLR -2 424 171 556 217 19 0 chr13 41515892 41515998 -60357171 + MSTB LTR MaLR 83 190 -236 * 2027 242 95 39 chr13 41515997 41516851 -60356318 - L1ME LINE L1 -1642 4504 3603 231 36 0 0 chr13 41516910 41516938 -60356231 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1314 191 62 10 chr13 41517551 41517839 -60355330 - AluJb SINE Alu -7 305 3 193 333 118 43 chr13 41518803 41518896 -60354273 - L2 LINE L2 -20 3252 3153 395 221 0 9 chr13 41520721 41520834 -60352335 + (TG)n Simple_repeat Simple_repeat 2 113 0 346 255 0 39 chr13 41520834 41520936 -60352233 + L1MC4 LINE L1 6614 6711 -1331 356 216 43 11 chr13 41521303 41521484 -60351685 + L1MA9 LINE L1 6008 6290 -22 391 296 17 0 chr13 41522359 41522474 -60350695 + L2 LINE L2 3192 3308 -5 351 0 0 0 chr13 41522604 41522643 -60350526 + (TA)n Simple_repeat Simple_repeat 1 39 0 2242 114 0 0 chr13 41522643 41522951 -60350218 - AluSg SINE Alu -1 309 2 292 291 118 16 chr13 41523523 41523650 -60349519 + MIR SINE MIR 52 191 -71 647 74 0 11 chr13 41524903 41524998 -60348171 + (TA)n Simple_repeat Simple_repeat 2 95 0 1596 171 100 0 chr13 41525681 41525962 -60347207 - MER1B DNA MER1_type 0 339 31 747 249 53 42 chr13 41527734 41528019 -60345150 - L1MB7 LINE L1 -415 5751 5464 996 266 145 13 chr13 41528038 41528582 -60344587 - L1MB7 LINE L1 -1302 4844 4229 290 242 85 18 chr13 41528602 41528825 -60344344 - L1MB7 LINE L1 -1889 4257 3876 * 581 351 53 39 chr13 41528823 41529614 -60343555 - L1MEc LINE L1 -5488 908 107 402 255 90 43 chr13 41529711 41530033 -60343136 + L1M4 LINE L1 5045 5381 -765 25 83 0 0 chr13 41530273 41530333 -60342836 + AT_rich Low_complexity Low_complexity 1 60 0 402 397 24 27 chr13 41531621 41531916 -60341253 - L2 LINE L2 -31 3241 2948 194 128 26 0 chr13 41532116 41532155 -60341014 + (TAA)n Simple_repeat Simple_repeat 1 40 0 204 330 62 10 chr13 41532213 41532310 -60340859 - MIR SINE MIR -61 147 46 282 250 62 16 chr13 41532693 41532821 -60340348 + MER103 DNA DNA 21 154 -12 27 0 0 0 chr13 41532962 41532989 -60340180 + AT_rich Low_complexity Low_complexity 1 27 0 302 296 108 52 chr13 41533504 41533717 -60339452 + MLT1L LTR MaLR 306 530 -85 682 235 95 68 chr13 41534053 41534263 -60338906 + L1MD1 LINE L1 20 240 -6300 2108 113 10 3 chr13 41534263 41534573 -60338596 + AluSp SINE Alu 1 312 -1 682 235 95 68 chr13 41534573 41534626 -60338543 + L1MD1 LINE L1 240 290 -6250 * 1747 274 65 9 chr13 41534611 41535298 -60337871 + L1MD1 LINE L1 2598 3323 -3217 517 207 0 0 chr13 41535288 41535399 -60337770 + L1MD1 LINE L1 5780 5890 -746 * 431 157 56 45 chr13 41535435 41535509 -60337660 - Tigger7 DNA MER2_type -8 2479 2402 1523 206 68 54 chr13 41535509 41535936 -60337233 + Tigger2a DNA MER2_type 1 433 -1 431 157 56 45 chr13 41535936 41535950 -60337219 - Tigger7 DNA MER2_type -85 2402 2390 1098 231 86 4 chr13 41535962 41536205 -60336964 - Tigger7 DNA MER2_type -470 263 1 2983 198 47 23 chr13 41536205 41536892 -60336277 + L1MD1 LINE L1 5925 6627 -9 571 263 27 0 chr13 41537279 41537465 -60335704 - L1M4c LINE L1 -4188 2458 2268 3238 239 61 61 chr13 41537497 41539338 -60333831 - L1M4c LINE L1 -4481 2165 392 228 328 195 16 chr13 41539691 41539819 -60333350 - MIR SINE MIR -84 178 28 1747 149 127 0 chr13 41540366 41540674 -60332495 + MER7A DNA MER2_type 2 346 0 21 89 0 0 chr13 41541106 41541162 -60332007 + AT_rich Low_complexity Low_complexity 1 56 0 1119 182 37 37 chr13 41542611 41542710 -60330459 - AluJb SINE Alu -98 214 116 2048 122 55 50 chr13 41542710 41543072 -60330097 - THE1B LTR MaLR 0 364 1 11106 104 6 11 chr13 41543072 41544660 -60328509 - THE1B-int LTR MaLR 0 1580 1 1935 142 73 14 chr13 41544660 41545004 -60328165 - THE1B LTR MaLR 0 364 1 1119 182 37 37 chr13 41545004 41545116 -60328053 - AluJb SINE Alu -193 119 1 1048 276 23 46 chr13 41545414 41545765 -60327404 + L1MD3 LINE L1 6496 6846 -1149 21 36 0 0 chr13 41546147 41546175 -60326994 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 41546286 41546309 -60326860 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr13 41546542 41546574 -60326595 + AT_rich Low_complexity Low_complexity 1 32 0 181 275 62 25 chr13 41546612 41546692 -60326477 - MIR SINE MIR 0 262 180 5011 48 0 0 chr13 41546723 41547333 -60325836 - L1PA5 LINE L1 -3 6151 5542 548 45 0 0 chr13 41547333 41547399 -60325770 - L1P2 LINE L1 -555 5599 5534 208 343 149 15 chr13 41547402 41547536 -60325633 - MIR SINE MIR -108 154 3 257 329 18 18 chr13 41547754 41547924 -60325245 + MER41B LTR ERV1 260 429 -206 4424 200 21 19 chr13 41548181 41549580 -60323589 - L1MA7 LINE L1 0 6291 4888 324 355 76 10 chr13 41550273 41550470 -60322699 + MIR SINE MIR 6 215 -47 28 0 0 0 chr13 41553220 41553248 -60319921 + AT_rich Low_complexity Low_complexity 1 28 0 180 349 24 36 chr13 41553257 41553340 -60319829 - L2 LINE L2 -46 3267 3186 23 54 0 0 chr13 41553493 41553530 -60319639 + AT_rich Low_complexity Low_complexity 1 37 0 3468 160 23 33 chr13 41553564 41554270 -60318899 - L1PA3 LINE L1 -838 5308 4610 1019 111 8 3 chr13 41554268 41554445 -60318724 + L1PA3 LINE L1 5307 5490 -678 * 2177 18 0 0 chr13 41554443 41554814 -60318355 - L1P1 LINE L1 -658 5497 5127 5114 25 0 0 chr13 41554814 41555399 -60317770 + L1PA3 LINE L1 5563 6155 0 4565 109 27 0 chr13 41555401 41556073 -60317096 + L1PA10 LINE L1 5476 6165 -3 517 333 40 18 chr13 41556268 41556490 -60316679 + MIR SINE MIR 36 262 0 472 285 103 0 chr13 41557731 41557896 -60315273 + MIR SINE MIR 78 259 -3 1830 197 14 14 chr13 41558635 41559000 -60314169 + MLT1A1 LTR MaLR 1 365 0 210 233 0 0 chr13 41559141 41559184 -60313985 + CT-rich Low_complexity Low_complexity 1 43 0 201 225 0 0 chr13 41559183 41559223 -60313946 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 1273 145 149 14 chr13 41559249 41559531 -60313638 + MER4A LTR ERV1 1 320 -344 574 191 252 30 chr13 41559601 41559844 -60313325 + MER4C LTR ERV1 159 656 -8 1900 162 32 35 chr13 41560966 41561312 -60311857 - THE1B LTR MaLR -19 345 1 182 313 84 12 chr13 41561312 41561395 -60311774 + L2 LINE L2 3174 3262 -10 223 233 0 39 chr13 41561497 41561542 -60311627 + GA-rich Low_complexity Low_complexity 3 48 -53 655 194 0 16 chr13 41561542 41561666 -60311503 + FLAM_A SINE Alu 2 123 -10 223 233 0 39 chr13 41561666 41561723 -60311446 + GA-rich Low_complexity Low_complexity 48 101 0 2233 112 52 3 chr13 41564202 41564549 -60308620 - THE1B LTR MaLR 0 364 1 9804 131 40 10 chr13 41564549 41564716 -60308453 - THE1B-int LTR MaLR 0 1580 1419 1960 137 18 80 chr13 41564716 41565104 -60308065 - THE1B LTR MaLR 0 364 1 9804 131 40 10 chr13 41565104 41566469 -60306700 - THE1B-int LTR MaLR -161 1419 3 2554 88 17 11 chr13 41566476 41566828 -60306341 - THE1B LTR MaLR -10 354 1 312 274 27 0 chr13 41566946 41567019 -60306150 + MIR SINE MIR 69 143 -65 315 0 0 0 chr13 41567117 41567152 -60306017 + (CA)n Simple_repeat Simple_repeat 2 36 0 1343 194 17 36 chr13 41567292 41567729 -60305440 + L1M1 LINE L1 5071 5506 -744 23 54 0 0 chr13 41567932 41567969 -60305200 + AT_rich Low_complexity Low_complexity 1 37 0 384 91 0 0 chr13 41569159 41569214 -60303955 - MLT2A1 LTR ERVL 0 444 390 644 323 80 43 chr13 41569975 41570436 -60302733 - L2 LINE L2 -5 3308 2831 28 29 0 0 chr13 41571606 41571641 -60301528 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr13 41572390 41572419 -60300750 + (TA)n Simple_repeat Simple_repeat 1 29 0 186 118 0 0 chr13 41572541 41572575 -60300594 + (TTA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr13 41572581 41572603 -60300566 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr13 41573155 41573209 -60299960 + AT_rich Low_complexity Low_complexity 1 54 0 328 316 107 12 chr13 41573244 41573412 -60299757 - MIR SINE MIR -74 188 5 255 356 88 42 chr13 41574138 41574354 -60298815 + MIR SINE MIR 1 226 -36 269 307 124 15 chr13 41574479 41574616 -60298553 + MLT1I LTR MaLR 207 358 -51 318 50 0 0 chr13 41575565 41575605 -60297564 + (TA)n Simple_repeat Simple_repeat 2 41 0 9875 179 26 49 chr13 41576057 41577901 -60295268 + L1MA5 LINE L1 3038 4923 -1377 2392 84 3 3 chr13 41577901 41578211 -60294958 - AluY SINE Alu -1 310 1 9875 179 26 49 chr13 41578211 41578391 -60294778 + L1MA5 LINE L1 4923 5106 -1194 4836 102 9 9 chr13 41578391 41579089 -60294080 + L1PA14 LINE L1 5462 6159 -2 9875 179 26 49 chr13 41579089 41579110 -60294059 + L1MA5 LINE L1 5106 5126 -1174 1963 129 7 0 chr13 41579110 41579388 -60293781 + AluSq SINE Alu 1 280 -33 9875 179 26 49 chr13 41579388 41580624 -60292545 + L1MA5 LINE L1 5126 6300 0 21 57 0 0 chr13 41582165 41582200 -60290969 + AT_rich Low_complexity Low_complexity 1 35 0 23 86 0 0 chr13 41582467 41582525 -60290644 + AT_rich Low_complexity Low_complexity 1 58 0 36 23 0 0 chr13 41582847 41582890 -60290279 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 41582943 41582999 -60290170 + AT_rich Low_complexity Low_complexity 1 56 0 683 100 0 0 chr13 41583819 41583909 -60289260 + 5S rRNA rRNA 1 90 -31 950 64 0 0 chr13 41583935 41584060 -60289109 - AluY SINE Alu 0 311 187 7908 222 22 37 chr13 41584423 41586567 -60286602 - L1MC3 LINE L1 0 8065 5890 338 74 19 0 chr13 41586567 41586621 -60286548 + (TG)n Simple_repeat Simple_repeat 1 55 0 7908 222 22 37 chr13 41586621 41588088 -60285081 - L1MC3 LINE L1 -2175 5890 3060 282 246 0 0 chr13 41588093 41588150 -60285019 - L1MC3 LINE L1 -5797 629 573 2669 192 78 7 chr13 41588153 41588701 -60284468 - L1MC3 LINE L1 -5811 615 29 930 188 0 0 chr13 41589627 41589771 -60283398 - AluSg/x SINE Alu -24 286 143 1141 198 103 15 chr13 41589897 41590160 -60283009 - AluJo SINE Alu -16 286 1 411 254 79 61 chr13 41590246 41590525 -60282644 - HAL1 LINE L1 -110 2397 2114 273 271 79 28 chr13 41590657 41590871 -60282298 - HAL1 LINE L1 -1232 1275 1051 13996 92 7 1 chr13 41590919 41593655 -60279514 - L1PA7 LINE L1 -13 6141 3393 554 338 63 23 chr13 41593707 41594301 -60278868 - HAL1 LINE L1 -1467 1040 404 873 106 8 0 chr13 41597734 41597866 -60275303 + L1PA15 LINE L1 6026 6158 -7 3966 24 0 0 chr13 41598297 41598761 -60274408 - L1PA3 LINE L1 0 6155 5692 3154 19 0 0 chr13 41598761 41599122 -60274047 + L1PA3 LINE L1 5360 5720 -435 192 77 0 0 chr13 41600022 41600048 -60273121 + (A)n Simple_repeat Simple_repeat 1 26 0 27 87 0 0 chr13 41601362 41601431 -60271738 + AT_rich Low_complexity Low_complexity 1 69 0 2107 84 0 3 chr13 41601851 41602183 -60270986 - AluY SINE Alu 0 331 1 24 32 0 0 chr13 41602904 41602935 -60270234 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr13 41603251 41603293 -60269876 + AT_rich Low_complexity Low_complexity 1 42 0 2105 92 0 3 chr13 41603299 41603628 -60269541 + AluY SINE Alu 1 328 0 750 289 90 65 chr13 41603953 41604430 -60268739 - LTR16C LTR ERVL 0 491 3 255 297 127 8 chr13 41604719 41604837 -60268332 + MLT1I LTR MaLR 1 132 -277 22 0 0 0 chr13 41607106 41607128 -60266041 + AT_rich Low_complexity Low_complexity 1 22 0 203 298 0 0 chr13 41607250 41607297 -60265872 - L2 LINE L2 -9 3263 3217 241 347 145 8 chr13 41607454 41607702 -60265467 - L2 LINE L2 -6 3307 3026 21 0 0 0 chr13 41607977 41607998 -60265171 + AT_rich Low_complexity Low_complexity 1 21 0 2756 139 15 18 chr13 41608208 41608662 -60264507 + MER31A LTR ERV1 2 454 -31 1302 198 45 100 chr13 41608771 41609190 -60263979 + MER31A-int LTR ERV1 13 408 -4528 920 183 85 111 chr13 41609348 41609725 -60263444 + MER31A-int LTR ERV1 883 1249 -3687 716 167 8 24 chr13 41609728 41609854 -60263315 + FLAM_C SINE Alu 2 125 -8 524 209 57 82 chr13 41609880 41610162 -60263007 + MER31A-int LTR ERV1 1239 1513 -3423 285 263 36 51 chr13 41610300 41610437 -60262732 + LOR1-int LTR ERV1 1339 1473 -6647 1712 189 0 3 chr13 41610568 41610859 -60262310 + AluJb SINE Alu 1 290 -22 196 175 0 25 chr13 41610860 41610940 -60262229 + (TA)n Simple_repeat Simple_repeat 1 78 0 318 167 0 39 chr13 41610963 41611041 -60262128 + LOR1-int LTR ERV1 4201 4275 -3845 4001 164 21 28 chr13 41611045 41611800 -60261369 + Tigger2 DNA MER2_type 2 751 -1967 944 230 71 8 chr13 41611864 41612103 -60261066 + Tigger2 DNA MER2_type 2465 2718 0 9285 195 66 40 chr13 41612103 41614522 -60258647 + LOR1-int LTR ERV1 2406 4886 -50 1516 160 0 75 chr13 41616730 41617061 -60256108 - AluSx SINE Alu -6 306 1 207 146 0 0 chr13 41618826 41618867 -60254302 + (CA)n Simple_repeat Simple_repeat 2 42 0 549 255 28 7 chr13 41619306 41619451 -60253718 - MIR SINE MIR -6 256 109 5286 170 18 14 chr13 41619503 41621061 -60252108 + L1PBa LINE L1 1855 3540 -3322 2704 133 13 19 chr13 41621161 41621636 -60251533 - L1MA8 LINE L1 -226 6065 5594 1463 252 32 14 chr13 41621633 41622125 -60251044 + L1M4 LINE L1 4384 4884 -1262 * 8339 74 17 10 chr13 41622132 41623671 -60249498 + L1P3 LINE L1 4206 5754 -400 296 298 0 21 chr13 41624774 41624868 -60248301 + MER5A DNA MER1_type 76 167 -22 243 0 0 0 chr13 41626054 41626081 -60247088 + (T)n Simple_repeat Simple_repeat 1 27 0 7102 18 13 2 chr13 41626434 41627267 -60245902 - L1PA3 LINE L1 0 6155 5314 2619 23 0 0 chr13 41627518 41627823 -60245346 - L1P1 LINE L1 -458 5697 5393 3725 12 0 0 chr13 41627823 41628248 -60244921 + L1PA2 LINE L1 5731 6155 0 256 348 58 34 chr13 41628288 41628495 -60244674 + MIR SINE MIR 3 214 -48 1003 257 19 23 chr13 41629214 41629475 -60243694 - MIR SINE MIR 0 262 3 213 159 0 0 chr13 41630619 41630663 -60242506 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 203 62 16 chr13 41631940 41632004 -60241165 - MER5C DNA MER1_type -257 67 1 42 20 0 0 chr13 41632117 41632166 -60241003 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 41632922 41632945 -60240224 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2160 104 14 0 chr13 41632948 41633237 -60239932 - AluSc SINE Alu -16 293 1 1310 234 3 17 chr13 41634421 41634711 -60238458 + AluJo SINE Alu 1 286 -26 33 0 0 0 chr13 41635005 41635038 -60238131 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 41635177 41635205 -60237964 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 41635674 41635702 -60237467 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 41636710 41636739 -60236430 + AT_rich Low_complexity Low_complexity 1 29 0 295 160 66 38 chr13 41636848 41636954 -60236215 + L1ME1 LINE L1 5137 5245 -901 232 315 0 11 chr13 41636919 41637011 -60236158 - L1MC4 LINE L1 -1326 6716 6626 * 2677 251 59 14 chr13 41637006 41637874 -60235295 + L1ME1 LINE L1 5238 6147 -19 548 72 0 12 chr13 41638447 41638530 -60234639 + (TG)n Simple_repeat Simple_repeat 2 83 0 185 389 0 11 chr13 41640410 41640500 -60232669 - L2 LINE L2 -4 3268 3180 292 313 62 28 chr13 41643467 41643611 -60229558 - L2 LINE L2 -10 3303 3155 221 356 0 14 chr13 41644008 41644081 -60229088 + MIR SINE MIR 70 141 -67 325 283 50 10 chr13 41644085 41644184 -60228985 - L2 LINE L2 -8 3305 3203 23 92 0 0 chr13 41644197 41644262 -60228907 + AT_rich Low_complexity Low_complexity 1 65 0 252 289 36 12 chr13 41644489 41644572 -60228597 + L2 LINE L2 3221 3305 -8 23 0 0 0 chr13 41644650 41644673 -60228496 + AT_rich Low_complexity Low_complexity 1 23 0 1966 111 0 21 chr13 41645254 41645567 -60227602 + AluSx SINE Alu 2 308 0 219 320 13 0 chr13 41645622 41645697 -60227472 - MIR SINE MIR -65 143 68 183 80 0 0 chr13 41646771 41646796 -60226373 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1183 298 72 52 chr13 41646890 41647541 -60225628 + MER69 DNA AcHobo 31 694 -532 522 197 113 0 chr13 41647563 41647705 -60225464 + MER69 DNA AcHobo 1651 1808 -718 1136 184 26 85 chr13 41647705 41648010 -60225159 + L1MA10 LINE L1 6048 6334 0 272 305 61 0 chr13 41648094 41648225 -60224944 + MER69 DNA AcHobo 1881 2019 -507 2516 128 46 14 chr13 41648272 41648687 -60224482 + MSTA LTR MaLR 1 428 0 8558 175 37 12 chr13 41648687 41650298 -60222871 + MSTA-int LTR MaLR 1 1651 0 2394 142 37 17 chr13 41650298 41650707 -60222462 + MSTA LTR MaLR 1 417 -11 21 0 0 0 chr13 41650803 41650824 -60222345 + AT_rich Low_complexity Low_complexity 1 21 0 243 343 19 19 chr13 41650927 41651035 -60222134 + L3 LINE CR1 1465 1572 -5 27 0 0 0 chr13 41651122 41651149 -60222020 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 41652536 41652561 -60220608 + AT_rich Low_complexity Low_complexity 1 25 0 24 39 0 0 chr13 41653599 41653625 -60219544 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 41653948 41653983 -60219186 + AT_rich Low_complexity Low_complexity 1 35 0 220 211 0 42 chr13 41655333 41655404 -60217765 + T-rich Low_complexity Low_complexity 2 69 0 31 0 0 0 chr13 41657439 41657470 -60215699 + AT_rich Low_complexity Low_complexity 1 31 0 193 350 90 23 chr13 41657622 41657799 -60215370 - MIR SINE MIR -59 203 15 644 204 0 8 chr13 41659275 41659407 -60213762 - FRAM SINE Alu -8 168 38 29 70 0 0 chr13 41660201 41660258 -60212911 + AT_rich Low_complexity Low_complexity 1 57 0 948 286 62 80 chr13 41660548 41660704 -60212465 - L1ME3A LINE L1 -6 6164 6007 2029 120 3 20 chr13 41660704 41661004 -60212165 + AluSx SINE Alu 3 297 -15 948 286 62 80 chr13 41661004 41661322 -60211847 - L1ME3A LINE L1 -163 6007 5705 2166 118 40 37 chr13 41661322 41661696 -60211473 + THE1C LTR MaLR 1 375 0 948 286 62 80 chr13 41661696 41661973 -60211196 - L1ME3A LINE L1 -465 5705 5425 641 312 72 18 chr13 41661952 41662509 -60210660 - L1ME3A LINE L1 -1023 5123 4537 * 390 260 59 29 chr13 41662615 41662819 -60210350 - L1ME3A LINE L1 -1787 4359 4150 351 328 27 21 chr13 41662853 41663039 -60210130 - L1ME3A LINE L1 -1983 4163 3977 741 283 88 39 chr13 41663050 41663724 -60209445 - L1ME3A LINE L1 -2292 3854 3148 1315 332 61 34 chr13 41663760 41664564 -60208605 + HERV16 LTR ERVL 2296 3085 -1911 978 348 68 45 chr13 41664695 41665669 -60207500 + HERV16 LTR ERVL 3282 4277 -1487 500 341 59 44 chr13 41665645 41666035 -60207134 + HERV16 LTR ERVL 4448 4843 -921 * 304 206 0 16 chr13 41666201 41666264 -60206905 + HERV16 LTR ERVL 4618 4679 -317 268 364 86 21 chr13 41666569 41666860 -60206309 + LTR16A LTR ERVL 1 310 -140 1385 172 13 110 chr13 41667309 41667548 -60205621 - MLT1A2 LTR MaLR 0 374 186 1403 184 0 83 chr13 41667548 41667875 -60205294 - AluJo SINE Alu -12 300 1 1385 172 13 110 chr13 41667875 41668025 -60205144 - MLT1A2 LTR MaLR -188 186 23 636 265 85 83 chr13 41668271 41668811 -60204358 - HAL1 LINE L1 -207 2300 1760 242 305 0 12 chr13 41668831 41668913 -60204256 - MLT-int LTR MaLR -1634 101 21 1458 92 10 5 chr13 41669161 41669367 -60203802 + AluY SINE Alu 4 210 -101 879 209 0 104 chr13 41669467 41669716 -60203453 - AluJo SINE Alu -88 224 2 716 167 13 47 chr13 41669717 41669867 -60203302 - MLT1A2 LTR MaLR -207 167 23 636 265 85 83 chr13 41670113 41670653 -60202516 - HAL1 LINE L1 -207 2300 1760 242 305 0 12 chr13 41670673 41670755 -60202414 - MLT-int LTR MaLR -1634 101 21 2237 61 31 3 chr13 41671004 41671298 -60201871 + AluY SINE Alu 4 305 -6 2385 132 52 8 chr13 41671427 41671829 -60201340 + MSTA LTR MaLR 1 420 -8 437 299 129 14 chr13 41672162 41672379 -60200790 - MIR SINE MIR -1 261 20 334 319 42 58 chr13 41674099 41674290 -60198879 + LTR16A LTR ERVL 1 188 -262 236 319 54 36 chr13 41674774 41674940 -60198229 + MIR SINE MIR 81 249 -13 231 351 75 0 chr13 41676385 41676479 -60196690 - MIR SINE MIR -137 125 25 775 168 5 76 chr13 41676978 41677175 -60195994 - L1MA9 LINE L1 -10 6302 6120 1093 215 0 12 chr13 41677179 41677421 -60195748 + L1MA9 LINE L1 5880 6118 -194 261 274 49 20 chr13 41677921 41678023 -60195146 + HAL1b LINE L1 591 695 -653 229 254 0 17 chr13 41678029 41678088 -60195081 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 363 285 110 62 chr13 41678229 41678601 -60194568 + HAL1b LINE L1 890 1279 -69 745 107 36 0 chr13 41678617 41678729 -60194440 + FLAM_C SINE Alu 1 116 -17 29 47 0 0 chr13 41678761 41678804 -60194365 + AT_rich Low_complexity Low_complexity 1 43 0 378 292 17 8 chr13 41679168 41679288 -60193881 - L2 LINE L2 -1 3312 3192 2000 179 26 88 chr13 41680800 41681346 -60191823 + MER67D LTR ERV1 3 514 0 240 179 39 0 chr13 41682261 41682339 -60190830 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 77 0 0 chr13 41682448 41682500 -60190669 + AT_rich Low_complexity Low_complexity 1 52 0 270 336 96 8 chr13 41683445 41683570 -60189599 - MIR SINE MIR -120 142 7 247 293 42 54 chr13 41684710 41684877 -60188292 - L2 LINE L2 -12 3301 3137 2725 182 66 40 chr13 41687626 41687978 -60185191 + L1MA7 LINE L1 5593 5934 -357 2012 123 7 0 chr13 41687978 41688270 -60184899 + AluSp SINE Alu 1 294 -19 2725 182 66 40 chr13 41688270 41688598 -60184571 + L1MA7 LINE L1 5934 6291 0 1875 251 64 48 chr13 41688587 41689405 -60183764 + L1ME1 LINE L1 5173 6001 -165 * 391 149 126 23 chr13 41689506 41689563 -60183606 - L1MA10 LINE L1 -110 6224 6154 360 0 0 0 chr13 41689563 41689603 -60183566 + (TG)n Simple_repeat Simple_repeat 1 40 0 391 149 126 23 chr13 41689603 41689632 -60183537 - L1MA10 LINE L1 -180 6154 6129 793 440 43 36 chr13 41689640 41690033 -60183136 - L1MB1 LINE L1 -114 6075 5680 * 1149 155 163 16 chr13 41690015 41690273 -60182896 + L1MB1 LINE L1 5412 5707 -627 507 229 15 8 chr13 41690272 41690403 -60182766 + L1MA10 LINE L1 6201 6332 -2 * 980 255 36 6 chr13 41690428 41690757 -60182412 - L1M4 LINE L1 -2994 3152 2814 344 261 91 42 chr13 41690784 41690949 -60182220 - L1MCc LINE L1 -6107 316 144 203 228 35 0 chr13 41692504 41692561 -60180608 - MIR SINE MIR -37 225 167 565 216 11 74 chr13 41692561 41692737 -60180432 + MER104 DNA Tc2 1 165 -15 180 360 13 0 chr13 41692787 41692862 -60180307 - MIR SINE MIR -147 115 40 29 47 0 0 chr13 41693348 41693391 -60179778 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr13 41693414 41693437 -60179732 + AT_rich Low_complexity Low_complexity 1 23 0 484 316 47 117 chr13 41693439 41693825 -60179344 - L2 LINE L2 -2 3270 2912 2393 99 65 8 chr13 41694671 41695026 -60178143 + THE1C LTR MaLR 1 375 0 738 53 0 0 chr13 41695106 41695201 -60177968 - L1PA5 LINE L1 -332 5822 5728 2604 47 0 0 chr13 41695203 41695521 -60177648 + L1PA5 LINE L1 5824 6141 -13 234 0 0 0 chr13 41695524 41695550 -60177619 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 215 100 0 25 chr13 41695767 41695807 -60177362 + (TTAG)n Simple_repeat Simple_repeat 2 40 0 1404 264 98 0 chr13 41695949 41696355 -60176814 - L1MEc LINE L1 -5524 872 427 739 267 116 12 chr13 41696357 41696615 -60176554 - L1MEc LINE L1 -6019 377 93 182 385 115 0 chr13 41696698 41696880 -60176289 - L2 LINE L2 -591 2723 2521 180 0 0 0 chr13 41697515 41697535 -60175634 + (TAGA)n Simple_repeat Simple_repeat 2 21 0 34 42 0 0 chr13 41697983 41698031 -60175138 + AT_rich Low_complexity Low_complexity 1 48 0 24 32 0 0 chr13 41698110 41698141 -60175028 + AT_rich Low_complexity Low_complexity 1 31 0 766 315 48 15 chr13 41698676 41699070 -60174099 + MER20B DNA MER1_type 183 589 -194 800 217 0 0 chr13 41699078 41699235 -60173934 + AluJb SINE Alu 145 301 -11 473 246 28 28 chr13 41699235 41699377 -60173792 + MER20B DNA MER1_type 606 747 -36 708 215 28 11 chr13 41699466 41699643 -60173526 - MER3 DNA MER1_type -6 203 24 12688 219 23 18 chr13 41699765 41704357 -60168812 - L1PA16 LINE L1 0 6869 2292 2636 135 73 8 chr13 41704357 41704837 -60168332 - MER9 LTR ERVK 0 511 1 12688 219 23 18 chr13 41704837 41706423 -60166746 - L1PA16 LINE L1 -4577 2292 715 1055 159 36 67 chr13 41706499 41707136 -60166033 + L1MA4 LINE L1 5254 6291 -5 1055 188 42 0 chr13 41707136 41707375 -60165794 + L1MA4 LINE L1 6047 6295 -5 39 0 0 0 chr13 41707878 41707917 -60165252 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr13 41707971 41708007 -60165162 + AT_rich Low_complexity Low_complexity 1 36 0 326 346 44 13 chr13 41708114 41708342 -60164827 + L1ME4a LINE L1 4802 5036 -1110 23 0 0 0 chr13 41708477 41708500 -60164669 + AT_rich Low_complexity Low_complexity 1 23 0 338 193 134 1 chr13 41708573 41708703 -60164466 + L1ME4a LINE L1 5315 5464 -719 361 339 111 33 chr13 41708762 41709187 -60163982 + L1ME4a LINE L1 5517 5974 -147 22 70 0 0 chr13 41709367 41709410 -60163759 + AT_rich Low_complexity Low_complexity 1 43 0 257 266 73 16 chr13 41709742 41709866 -60163303 + L3 LINE CR1 1148 1278 -299 24 32 0 0 chr13 41710807 41710838 -60162331 + AT_rich Low_complexity Low_complexity 1 31 0 280 316 53 26 chr13 41711229 41711343 -60161826 + L2 LINE L2 3187 3303 -10 277 141 0 26 chr13 41711414 41711492 -60161677 + (TA)n Simple_repeat Simple_repeat 2 77 0 31 58 0 0 chr13 41711531 41711583 -60161586 + AT_rich Low_complexity Low_complexity 1 52 0 354 357 62 39 chr13 41712370 41712776 -60160393 + L2 LINE L2 2437 2851 -463 679 161 0 7 chr13 41712811 41712954 -60160215 - AluSc SINE Alu -16 293 152 2277 228 60 60 chr13 41713061 41713291 -60159878 + L1MD2 LINE L1 5642 5871 -488 1365 210 17 28 chr13 41713291 41713582 -60159587 + AluJo SINE Alu 2 289 -23 2277 228 60 60 chr13 41713582 41714057 -60159112 + L1MD2 LINE L1 5870 6347 -12 1727 254 66 41 chr13 41714199 41715055 -60158114 - L1M4 LINE L1 -2229 3917 3035 2665 184 12 0 chr13 41715055 41715543 -60157626 - L1PA16 LINE L1 0 6166 5673 1937 223 32 2 chr13 41715543 41715974 -60157195 + L1P LINE L1 4025 4468 -1678 739 143 0 50 chr13 41716467 41716649 -60156520 + (TTTC)n Simple_repeat Simple_repeat 2 174 0 205 235 0 31 chr13 41716658 41716756 -60156413 + CT-rich Low_complexity Low_complexity 2 96 0 1777 190 44 3 chr13 41717311 41717700 -60155469 - L1MC3 LINE L1 -11 7774 7370 517 297 55 16 chr13 41717725 41717907 -60155262 + MIR SINE MIR 17 205 -57 221 222 0 28 chr13 41718004 41718076 -60155093 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr13 41718188 41718209 -60154960 + AT_rich Low_complexity Low_complexity 1 21 0 429 275 0 11 chr13 41718237 41718365 -60154804 + L1MC/D LINE L1 5496 5617 -683 920 211 14 9 chr13 41718467 41718680 -60154489 + L1MC3 LINE L1 6945 7158 -627 2273 87 0 6 chr13 41719377 41719688 -60153481 + AluY SINE Alu 1 309 -2 661 324 125 19 chr13 41719695 41720216 -60152953 - L2 LINE L2 -1724 1590 1015 724 325 22 0 chr13 41720382 41720613 -60152556 + L2 LINE L2 2560 2795 -519 898 215 16 0 chr13 41720737 41720923 -60152246 + MER5A DNA MER1_type 1 189 0 449 299 12 30 chr13 41721059 41721223 -60151946 + L2 LINE L2 3153 3313 0 754 186 7 7 chr13 41721825 41721965 -60151204 + AluSx SINE Alu 39 178 -134 195 252 27 0 chr13 41722080 41722191 -60150978 + (TA)n Simple_repeat Simple_repeat 2 115 0 211 264 121 22 chr13 41722467 41722558 -60150611 + L3 LINE CR1 1467 1566 -11 192 295 135 26 chr13 41722663 41722819 -60150350 - L2 LINE L2 -8 3305 3133 25 31 0 0 chr13 41723188 41723220 -60149949 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr13 41725861 41725895 -60147274 + AT_rich Low_complexity Low_complexity 1 34 0 749 256 85 52 chr13 41726175 41726480 -60146689 - L1ME1 LINE L1 -1 6165 5851 304 224 82 10 chr13 41726489 41726587 -60146582 + MLT1C LTR MaLR 3 107 -398 686 249 43 5 chr13 41726612 41726797 -60146372 + MLT1C LTR MaLR 276 467 0 1114 230 101 68 chr13 41726812 41727316 -60145853 - L1ME1 LINE L1 -341 5825 5305 1652 220 68 19 chr13 41727327 41727563 -60145606 - MLT1C LTR MaLR -4 463 240 189 0 0 0 chr13 41727563 41727584 -60145585 + (TG)n Simple_repeat Simple_repeat 2 22 0 1652 220 68 19 chr13 41727584 41727604 -60145565 - MLT1C LTR MaLR -227 240 222 2384 61 0 6 chr13 41727604 41727915 -60145254 - AluY SINE Alu -2 309 1 1652 220 68 19 chr13 41727915 41728085 -60145084 - MLT1C LTR MaLR -245 222 15 23 33 0 0 chr13 41728326 41728356 -60144813 + AT_rich Low_complexity Low_complexity 1 30 0 357 373 15 0 chr13 41728449 41728583 -60144586 - L2 LINE L2 -1333 1981 1846 2061 228 53 53 chr13 41729171 41730616 -60142553 + L1MC/D LINE L1 4282 5715 -527 2000 134 6 27 chr13 41732497 41732862 -60140307 - L1PA10 LINE L1 -1 6482 6126 23272 183 33 39 chr13 41732962 41737518 -60135651 - L1PA10 LINE L1 -666 5817 1328 2769 79 0 0 chr13 41737518 41737871 -60135298 - THE1A LTR MaLR -2 353 1 23272 183 33 39 chr13 41737871 41739184 -60133985 - L1PA10 LINE L1 -5155 1328 8 196 316 35 0 chr13 41740480 41740537 -60132632 - L2 LINE L2 -5 3267 3209 258 268 37 37 chr13 41740889 41740971 -60132198 - L3 LINE CR1 -1 1576 1495 205 300 171 76 chr13 41741313 41741523 -60131646 - L3 LINE CR1 -833 744 515 258 286 0 0 chr13 41742200 41742270 -60130899 + (CA)n Simple_repeat Simple_repeat 2 71 0 2071 169 28 3 chr13 41743112 41743467 -60129702 + THE1B LTR MaLR 1 364 0 10060 110 26 36 chr13 41743467 41745064 -60128105 + THE1B-int LTR MaLR 1 1580 0 2297 124 28 6 chr13 41745064 41745420 -60127749 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr13 41745652 41745673 -60127496 + AT_rich Low_complexity Low_complexity 1 21 0 2289 105 73 14 chr13 41746250 41746594 -60126575 + THE1B LTR MaLR 1 364 0 10513 103 43 11 chr13 41746594 41747393 -60125776 + THE1B-int LTR MaLR 1 772 -808 2313 103 0 3 chr13 41747393 41747705 -60125464 + AluSp SINE Alu 1 311 -2 10513 103 43 11 chr13 41747705 41748435 -60124734 + THE1B-int LTR MaLR 772 1580 0 1983 145 73 14 chr13 41748435 41748779 -60124390 + THE1B LTR MaLR 1 364 0 355 272 204 14 chr13 41750504 41750651 -60122518 - MER5B DNA MER1_type 0 178 4 23 0 0 0 chr13 41751078 41751101 -60122068 + AT_rich Low_complexity Low_complexity 1 23 0 445 145 211 40 chr13 41751109 41751261 -60121908 - L1MC3 LINE L1 -8 7777 7600 37 23 0 0 chr13 41752809 41752853 -60120316 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr13 41753435 41753461 -60119708 + AT_rich Low_complexity Low_complexity 1 26 0 773 179 65 0 chr13 41753962 41754146 -60119023 + L1MA8 LINE L1 6094 6289 -2 21 0 0 0 chr13 41754149 41754170 -60118999 + AT_rich Low_complexity Low_complexity 1 21 0 239 286 48 0 chr13 41754547 41754631 -60118538 - L1MC/D LINE L1 -2300 5508 5421 2363 214 41 7 chr13 41754901 41755363 -60117806 + LTR42 LTR ERVL 18 495 0 27 73 0 0 chr13 41756679 41756734 -60116435 + AT_rich Low_complexity Low_complexity 1 55 0 318 365 13 19 chr13 41756980 41757136 -60116033 - MIR SINE MIR 0 262 108 216 285 8 65 chr13 41757200 41757323 -60115846 + MIR SINE MIR 147 262 0 866 188 36 21 chr13 41808809 41809001 -60064168 - LOR1b LTR ERV1 -266 195 1 993 173 140 0 chr13 41809103 41809271 -60063898 + MER1A DNA MER1_type 1 197 -332 3362 128 242 6 chr13 41809271 41809936 -60063233 - LTR12 LTR ERV1 0 826 5 2429 175 13 23 chr13 41809950 41810555 -60062614 - pTR5 LTR ERV1 -1092 1346 748 2325 111 15 9 chr13 41810555 41810898 -60062271 + MER1A DNA MER1_type 185 529 0 835 211 91 43 chr13 41811102 41811311 -60061858 + MER20 DNA MER1_type 1 219 0 5763 175 28 26 chr13 41811523 41813524 -60059645 - L1 LINE L1 -2772 4793 2734 410 39 0 0 chr13 41813524 41813576 -60059593 + MADE1 DNA Mariner 1 52 -28 5763 175 28 26 chr13 41813576 41813759 -60059410 - L1 LINE L1 -4831 2734 2553 231 323 15 0 chr13 41815506 41815571 -60057598 + LTR67 LTR ERVL 113 178 -379 246 314 81 17 chr13 41815715 41815887 -60057282 + LTR67 LTR ERVL 353 535 -22 21 71 0 0 chr13 41817923 41817965 -60055204 + AT_rich Low_complexity Low_complexity 1 42 0 186 71 0 0 chr13 41818032 41818060 -60055109 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 41818551 41818572 -60054597 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 41819367 41819399 -60053770 + AT_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chr13 41819496 41819537 -60053632 + (TA)n Simple_repeat Simple_repeat 1 41 0 365 280 154 28 chr13 41821483 41821626 -60051543 - MER5B DNA MER1_type -1 177 17 18455 56 1 0 chr13 41822972 41825269 -60047900 - L1P LINE L1 -3838 2308 10 7122 25 1 0 chr13 41825269 41826109 -60047060 + L1PA4 LINE L1 5315 6155 0 1544 148 13 0 chr13 41826305 41826568 -60046601 - AluSx SINE Alu 0 315 50 22 35 0 0 chr13 41826696 41826725 -60046444 + AT_rich Low_complexity Low_complexity 1 29 0 1916 91 60 0 chr13 41826992 41827290 -60045879 - L1PA8 LINE L1 -3 6169 5854 2154 201 31 2 chr13 41827326 41827740 -60045429 + MSTB LTR MaLR 1 426 0 6830 57 16 1 chr13 41828184 41829550 -60043619 + L1PA7 LINE L1 4790 6141 -13 279 335 28 63 chr13 41829888 41829981 -60043188 + L2 LINE L2 2378 2473 -841 2317 71 0 14 chr13 41829981 41830275 -60042894 - AluY SINE Alu -21 290 1 279 335 28 63 chr13 41830275 41830435 -60042734 + L2 LINE L2 2473 2622 -692 185 296 0 128 chr13 41831108 41831233 -60041936 - MIR SINE MIR -70 192 84 290 299 82 22 chr13 41832229 41832363 -60040806 + MER117 DNA MER1_type 30 171 -26 4040 138 12 3 chr13 41832570 41833214 -60039955 + L1PA15 LINE L1 5513 6162 -3 594 334 71 30 chr13 41833505 41833972 -60039197 - LTR16C LTR ERVL -2 489 4 308 24 0 24 chr13 41835690 41835732 -60037437 + (TAA)n Simple_repeat Simple_repeat 2 42 0 500 373 28 0 chr13 41835732 41835984 -60037185 - MIR SINE MIR -3 259 1 687 282 151 28 chr13 41836923 41837464 -60035705 - MLT1G1 LTR MaLR 0 590 4 23 0 0 0 chr13 41837551 41837574 -60035595 + AT_rich Low_complexity Low_complexity 1 23 0 274 351 20 0 chr13 41839672 41839823 -60033346 + GA-rich Low_complexity Low_complexity 2 155 0 280 291 24 92 chr13 41839906 41840112 -60033057 - MLT1L LTR MaLR -421 194 3 183 388 33 40 chr13 41840461 41840613 -60032556 - L2 LINE L2 0 3272 3122 347 342 19 32 chr13 41841403 41841558 -60031611 + MIR3 SINE MIR 42 194 -14 407 300 95 21 chr13 41841739 41841929 -60031240 - MIR SINE MIR -18 244 41 2431 55 3 0 chr13 41845364 41845657 -60027512 + AluY SINE Alu 1 294 -17 180 417 34 5 chr13 41846067 41846271 -60026898 - MIR SINE MIR -6 256 47 189 213 0 0 chr13 41846532 41846579 -60026590 + (CATATA)n Simple_repeat Simple_repeat 1 47 0 2166 81 32 0 chr13 41847927 41848212 -60024957 + AluSq SINE Alu 3 296 -17 304 265 6 43 chr13 41850613 41850775 -60022394 + HAL1b LINE L1 618 773 -575 248 269 115 67 chr13 41850783 41850991 -60022178 + HAL1b LINE L1 830 1047 -301 314 283 145 30 chr13 41851073 41851239 -60021930 + HAL1b LINE L1 1164 1348 0 37 62 0 0 chr13 41851376 41851441 -60021728 + AT_rich Low_complexity Low_complexity 1 65 0 25 0 0 0 chr13 41853611 41853636 -60019533 + AT_rich Low_complexity Low_complexity 1 25 0 41 36 0 0 chr13 41854218 41854273 -60018896 + AT_rich Low_complexity Low_complexity 1 55 0 343 208 0 120 chr13 41855840 41855965 -60017204 - L1ME LINE L1 -609 5561 5452 460 312 72 52 chr13 41855986 41856601 -60016568 - L1ME LINE L1 -758 5388 4762 401 306 65 34 chr13 41856683 41857065 -60016104 - L1ME LINE L1 -1880 4266 3873 899 276 119 30 chr13 41857206 41857775 -60015394 - L1ME LINE L1 -2760 3386 2712 1999 102 6 50 chr13 41857775 41858053 -60015116 + AluSg SINE Alu 1 265 -45 291 28 0 0 chr13 41858053 41858089 -60015080 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1999 102 6 50 chr13 41858089 41858132 -60015037 + AluSg SINE Alu 265 308 -2 899 276 119 30 chr13 41858132 41858430 -60014739 - L1ME LINE L1 -3434 2712 2442 708 158 68 0 chr13 41858570 41858716 -60014453 + L1MA9 LINE L1 5154 5309 -837 2119 163 18 5 chr13 41858816 41859202 -60013967 + L1MA9 LINE L1 5305 5695 -596 1896 139 18 15 chr13 41859204 41859541 -60013628 + L1MA8 LINE L1 5946 6283 -8 22 0 0 0 chr13 41859542 41859564 -60013605 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 41859999 41860022 -60013147 + (TA)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr13 41860049 41860076 -60013093 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 41860206 41860229 -60012940 + AT_rich Low_complexity Low_complexity 1 23 0 2152 114 7 0 chr13 41860234 41860532 -60012637 - AluSx SINE Alu -12 300 1 503 282 161 21 chr13 41860550 41861071 -60012098 - L1MEc LINE L1 -1299 5083 4490 1362 165 23 38 chr13 41861100 41861366 -60011803 - AluJo SINE Alu -48 264 3 1327 292 39 45 chr13 41861369 41862160 -60011009 - L1MEc LINE L1 -1886 4496 3711 797 269 206 21 chr13 41862230 41862855 -60010314 - L1MEc LINE L1 -2956 3426 2686 2370 163 19 37 chr13 41862869 41863353 -60009816 + L1MA9 LINE L1 5823 6297 -15 2027 110 9 31 chr13 41863444 41863763 -60009406 - AluSx SINE Alu 0 312 1 575 124 41 0 chr13 41863879 41863976 -60009193 - AluS SINE Alu -212 101 1 488 233 75 39 chr13 41864003 41864259 -60008910 - L1MEc LINE L1 -3795 2587 2329 343 349 56 24 chr13 41864387 41864762 -60008407 - L1MEc LINE L1 -5918 645 259 431 269 63 62 chr13 41865202 41865599 -60007570 - L1MDb LINE L1 -4712 1549 1091 399 278 86 66 chr13 41865799 41866148 -60007021 - L1MDb LINE L1 -5165 905 550 196 308 19 0 chr13 41869524 41869576 -60003593 - L3 LINE CR1 -1 1576 1524 189 367 78 0 chr13 41870045 41870135 -60003034 - L2 LINE L2 -48 3265 3169 2901 207 61 19 chr13 41870984 41871671 -60001498 - LTR28 LTR ERV1 -304 716 1 183 329 0 14 chr13 41872078 41872151 -60001018 - L2 LINE L2 -1437 1877 1806 344 307 20 0 chr13 41872156 41872257 -60000912 + L2 LINE L2 3160 3262 -10 196 349 105 0 chr13 41872285 41872371 -60000798 - L2 LINE L2 -1522 1792 1698 184 394 81 0 chr13 41873560 41873659 -59999510 - L2 LINE L2 -22 3250 3144 7518 197 12 7 chr13 41875230 41877737 -59995432 - L1PB4 LINE L1 0 6156 3637 246 227 0 82 chr13 41878045 41878142 -59995027 + MER67C LTR ERV1 1 89 -425 1273 143 0 158 chr13 41878179 41878514 -59994655 - AluJb SINE Alu -19 283 2 812 228 205 48 chr13 41878515 41878949 -59994220 + MER67C LTR ERV1 72 510 -4 494 193 29 14 chr13 41879038 41879178 -59993991 + L1M4 LINE L1 4980 5121 -1025 1932 192 0 11 chr13 41879562 41879931 -59993238 + MLT1A1 LTR MaLR 1 365 0 180 0 0 0 chr13 41880962 41880982 -59992187 + (TGG)n Simple_repeat Simple_repeat 1 20 0 32 67 0 0 chr13 41881768 41881828 -59991341 + AT_rich Low_complexity Low_complexity 1 60 0 3204 219 211 65 chr13 41882054 41882839 -59990330 + L1MDa LINE L1 22 691 -5849 1584 194 92 6 chr13 41882839 41883175 -59989994 + MLT1A1 LTR MaLR 1 365 0 3204 219 211 65 chr13 41883175 41883490 -59989679 + L1MDa LINE L1 691 959 -5581 180 77 0 0 chr13 41883490 41883516 -59989653 + (TG)n Simple_repeat Simple_repeat 2 27 0 3204 219 211 65 chr13 41883516 41883809 -59989360 + L1MDa LINE L1 959 1619 -4921 228 348 9 0 chr13 41884029 41884141 -59989028 + L1M4 LINE L1 88 200 -6342 4738 237 45 37 chr13 41884202 41886302 -59986867 + L1M4 LINE L1 4154 6267 -415 23 33 0 0 chr13 41886555 41886585 -59986584 + AT_rich Low_complexity Low_complexity 1 30 0 387 280 80 47 chr13 41887214 41887364 -59985805 + MIR3 SINE MIR 42 196 -12 225 132 0 0 chr13 41888795 41888833 -59984336 + (T)n Simple_repeat Simple_repeat 1 38 0 757 222 28 0 chr13 41890283 41890459 -59982710 + MLT2D LTR ERVL 234 414 0 44 46 0 0 chr13 41890620 41890685 -59982484 + AT_rich Low_complexity Low_complexity 1 65 0 243 368 60 8 chr13 41893605 41893722 -59979447 + MIR SINE MIR 7 129 -133 21 36 0 0 chr13 41893802 41893830 -59979339 + AT_rich Low_complexity Low_complexity 1 28 0 195 354 0 0 chr13 41893937 41893985 -59979184 + L2 LINE L2 3214 3261 -11 422 356 7 0 chr13 41894303 41894452 -59978717 - MER5B DNA MER1_type -16 162 13 254 265 174 0 chr13 41894547 41894645 -59978524 - L3 LINE CR1 -108 1469 1355 272 186 0 17 chr13 41894996 41895055 -59978114 - MLT1F1 LTR MaLR 0 567 510 974 258 49 28 chr13 41895130 41895417 -59977752 - MLT1F1 LTR MaLR -273 294 2 256 338 94 6 chr13 41895498 41895658 -59977511 - L3 LINE CR1 -805 772 599 2176 97 28 0 chr13 41895746 41896036 -59977133 - AluSx SINE Alu -14 298 1 330 26 0 0 chr13 41896869 41896908 -59976261 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 41896979 41897000 -59976169 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 41898149 41898171 -59974998 + AT_rich Low_complexity Low_complexity 1 22 0 424 281 87 35 chr13 41898356 41898678 -59974491 - L1ME LINE L1 -335 5786 5471 233 270 16 0 chr13 41900569 41900632 -59972537 + (TA)n Simple_repeat Simple_repeat 1 64 0 1303 188 23 0 chr13 41903350 41903611 -59969558 + L1MC2 LINE L1 6064 6330 -14 733 320 24 129 chr13 41903714 41904033 -59969136 - AluYb8 SINE Alu 0 318 40 22 35 0 0 chr13 41904121 41904150 -59969019 + AT_rich Low_complexity Low_complexity 1 29 0 450 170 116 0 chr13 41904153 41904265 -59968904 + L1MA9 LINE L1 6188 6312 0 23 0 0 0 chr13 41904373 41904396 -59968773 + AT_rich Low_complexity Low_complexity 1 23 0 288 303 18 23 chr13 41904889 41905016 -59968153 + MER5A DNA MER1_type 11 138 -40 436 152 305 0 chr13 41905039 41905144 -59968025 + MER1B DNA MER1_type 1 137 -160 402 158 171 0 chr13 41905139 41905221 -59967948 + MER1B DNA MER1_type 42 137 -160 * 1581 133 96 35 chr13 41905216 41905562 -59967607 + MER1B DNA MER1_type 42 339 0 183 42 0 0 chr13 41905639 41905663 -59967506 + (TG)n Simple_repeat Simple_repeat 2 25 0 432 309 12 19 chr13 41908055 41908217 -59964952 - L3b LINE CR1 -318 1265 1105 1932 148 0 20 chr13 41909641 41909945 -59963224 + AluSx SINE Alu 1 298 -14 25 51 0 0 chr13 41911363 41911402 -59961767 + AT_rich Low_complexity Low_complexity 1 39 0 670 173 13 53 chr13 41911746 41911896 -59961273 + MLT1A1 LTR MaLR 37 180 -185 1828 142 42 0 chr13 41912200 41912488 -59960681 - AluSx SINE Alu -11 301 2 1241 85 65 10 chr13 41912982 41913183 -59959986 - L1MA1 LINE L1 0 6302 6091 9072 147 9 47 chr13 41913283 41915722 -59957447 - L1MA1 LINE L1 -438 5864 3523 22 35 0 0 chr13 41916105 41916134 -59957035 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 41917560 41917581 -59955588 + AT_rich Low_complexity Low_complexity 1 21 0 207 333 65 54 chr13 41917889 41918057 -59955112 + MIR SINE MIR 47 216 -46 21 57 0 0 chr13 41918439 41918474 -59954695 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 0 35 chr13 41918969 41918998 -59954171 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2080 90 0 33 chr13 41919010 41919311 -59953858 - AluY SINE Alu -17 294 4 2481 247 85 26 chr13 41919497 41920083 -59953086 - L1MB7 LINE L1 -9 6175 5523 6968 47 15 1 chr13 41920083 41921449 -59951720 + L1PA7 LINE L1 4765 6152 -2 2481 247 85 26 chr13 41921449 41921842 -59951327 - L1MB7 LINE L1 -661 5523 5155 22 80 0 0 chr13 41921849 41921899 -59951270 + AT_rich Low_complexity Low_complexity 1 50 0 47 33 0 0 chr13 41922057 41922118 -59951051 + AT_rich Low_complexity Low_complexity 1 61 0 740 331 101 4 chr13 41922593 41922871 -59950298 - MLT2E LTR ERVL -223 405 101 430 344 84 0 chr13 41923147 41923420 -59949749 + L1ME LINE L1 5490 5785 -336 2503 145 84 9 chr13 41923496 41923958 -59949211 - LOR1a LTR ERV1 0 497 1 596 280 93 28 chr13 41924953 41925167 -59948002 + MIR SINE MIR 2 229 -33 446 239 187 7 chr13 41925386 41925541 -59947628 - MIR SINE MIR -19 243 61 373 216 216 0 chr13 41926142 41926253 -59946916 + Tigger7 DNA MER2_type 2350 2484 -3 350 182 30 0 chr13 41926257 41926323 -59946846 - MLT1C LTR MaLR -390 77 10 289 355 32 0 chr13 41926364 41926488 -59946681 + MIR3 SINE MIR 61 188 -20 1517 244 45 8 chr13 41926624 41926779 -59946390 - MLT1A1 LTR MaLR 0 365 217 2360 161 67 7 chr13 41926779 41927214 -59945955 - LOR1b LTR ERV1 0 461 1 1517 244 45 8 chr13 41927214 41927410 -59945759 - MLT1A1 LTR MaLR -148 217 1 1733 210 22 28 chr13 41927644 41928006 -59945163 + MLT1A1 LTR MaLR 1 360 -5 345 47 0 0 chr13 41928895 41928938 -59944231 + (CA)n Simple_repeat Simple_repeat 2 44 0 479 123 12 0 chr13 41929463 41929544 -59943625 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 241 339 0 0 chr13 41930005 41930070 -59943099 + MIR SINE MIR 65 129 -79 26 0 0 0 chr13 41930130 41930156 -59943013 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr13 41930347 41930381 -59942788 + AT_rich Low_complexity Low_complexity 1 34 0 235 246 0 0 chr13 41930395 41930452 -59942717 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 56 0 0 chr13 41930708 41930744 -59942425 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr13 41931843 41931875 -59941294 + AT_rich Low_complexity Low_complexity 1 32 0 2133 66 7 14 chr13 41931979 41932307 -59940862 + AluY SINE Alu 1 326 0 237 330 47 0 chr13 41932490 41932596 -59940573 + MER94 DNA DNA 24 134 0 382 355 104 44 chr13 41933579 41933945 -59939224 - L3 LINE CR1 -87 1490 1103 438 234 135 0 chr13 41936998 41937109 -59936060 - L2 LINE L2 0 3313 3188 1872 123 7 7 chr13 41937223 41937499 -59935670 + AluSx SINE Alu 1 276 -36 39 22 0 0 chr13 41937507 41937553 -59935616 + AT_rich Low_complexity Low_complexity 1 46 0 1399 227 3 22 chr13 41938643 41938960 -59934209 - AluJo SINE Alu -1 311 1 22 0 0 0 chr13 41939737 41939759 -59933410 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr13 41939838 41939863 -59933306 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 283 216 11 11 chr13 41939868 41939956 -59933213 + (TA)n Simple_repeat Simple_repeat 2 89 0 1279 245 41 48 chr13 41941224 41941501 -59931668 - MLT1C LTR MaLR -8 459 185 722 182 0 8 chr13 41941501 41941633 -59931536 - FLAM_C SINE Alu -2 131 1 1279 245 41 48 chr13 41941633 41941817 -59931352 - MLT1C LTR MaLR -282 185 1 25 0 0 0 chr13 41942520 41942545 -59930624 + AT_rich Low_complexity Low_complexity 1 25 0 2287 112 0 0 chr13 41942812 41943125 -59930044 - AluSq SINE Alu 0 313 1 1566 194 29 41 chr13 41943484 41943829 -59929340 + MLT1A1 LTR MaLR 25 365 0 25 19 8 0 chr13 41944088 41944163 -59929006 + AT_rich Low_complexity Low_complexity 1 32 0 828 292 89 29 chr13 41944328 41944811 -59928358 - L1ME3A LINE L1 -15 6155 5644 1962 142 0 0 chr13 41944966 41945255 -59927914 - AluSx SINE Alu -23 289 1 912 269 22 8 chr13 41945255 41945541 -59927628 - L1P5 LINE L1 -541 5610 5315 257 266 0 0 chr13 41946304 41946368 -59926801 - L1MEd LINE L1 -5102 1017 954 775 195 0 0 chr13 41946373 41946501 -59926668 - FLAM_A SINE Alu -5 128 1 264 375 48 0 chr13 41947483 41947587 -59925582 + L2 LINE L2 3125 3233 -39 22 35 0 0 chr13 41947752 41947781 -59925388 + AT_rich Low_complexity Low_complexity 1 29 0 13029 227 23 13 chr13 41948590 41952487 -59920682 + L1PA16 LINE L1 1721 5674 -492 189 0 0 0 chr13 41952487 41952508 -59920661 + (TAA)n Simple_repeat Simple_repeat 1 21 0 13029 227 23 13 chr13 41952508 41953001 -59920168 + L1PA16 LINE L1 5674 6160 -6 210 335 152 25 chr13 41953126 41953323 -59919846 + MIR SINE MIR 17 238 -24 26 64 0 0 chr13 41953370 41953417 -59919752 + AT_rich Low_complexity Low_complexity 1 47 0 1763 153 31 3 chr13 41954200 41954494 -59918675 + MER47A DNA MER2_type 65 366 0 544 162 19 0 chr13 41954494 41954599 -59918570 - L1 LINE L1 -876 5270 5164 217 361 0 0 chr13 41954621 41954704 -59918465 - MIR SINE MIR -128 134 52 454 173 13 0 chr13 41955210 41955285 -59917884 + MLT1A1 LTR MaLR 12 87 -278 466 35 0 58 chr13 41955285 41955371 -59917798 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 1307 101 11 16 chr13 41955372 41955560 -59917609 - AluSg/x SINE Alu -15 294 108 1216 216 17 34 chr13 41955671 41955750 -59917419 + MLT1A1 LTR MaLR 75 154 -211 2035 89 68 0 chr13 41955750 41956031 -59917138 + AluSp SINE Alu 1 300 -13 1216 216 17 34 chr13 41956031 41956243 -59916926 + MLT1A1 LTR MaLR 154 361 -4 221 337 0 0 chr13 41957718 41957819 -59915350 + A-rich Low_complexity Low_complexity 1 101 0 651 343 20 12 chr13 41958567 41958812 -59914357 + MIR SINE MIR 2 248 -14 365 307 32 73 chr13 41959356 41959574 -59913595 - MIR SINE MIR -1 261 53 914 63 79 0 chr13 41959655 41959782 -59913387 + MER85 DNA T2_type 1 137 -2 2094 57 78 0 chr13 41960069 41960351 -59912818 + AluY SINE Alu 1 304 -7 661 277 140 96 chr13 41961747 41962248 -59910921 - MLT1G1 LTR MaLR 0 595 20 425 315 150 43 chr13 41962401 41962480 -59910689 - L2 LINE L2 -290 2982 2913 1771 160 163 3 chr13 41962480 41962849 -59910320 - MSTA LTR MaLR 0 428 1 425 315 150 43 chr13 41962849 41963326 -59909843 - L2 LINE L2 -359 2913 2373 273 254 282 0 chr13 41963480 41963590 -59909579 + MIR SINE MIR 122 262 0 1313 114 5 0 chr13 41963921 41964114 -59909055 + L1PB1 LINE L1 5957 6150 -1 2750 16 0 0 chr13 41964135 41964445 -59908724 + AluYb8 SINE Alu 1 310 -8 264 284 202 9 chr13 41964775 41964884 -59908285 - L2 LINE L2 -4 3309 3180 688 330 74 26 chr13 41965030 41965484 -59907685 - L2 LINE L2 -302 3011 2534 299 345 132 0 chr13 41967480 41967654 -59905515 + MIR SINE MIR 66 262 0 28 71 0 0 chr13 41967661 41967717 -59905452 + AT_rich Low_complexity Low_complexity 1 56 0 1013 221 25 8 chr13 41967743 41967978 -59905191 - AluJb SINE Alu -54 258 20 430 299 16 8 chr13 41967989 41968116 -59905053 + MLT1F1 LTR MaLR 1 128 -439 23 0 0 0 chr13 41970436 41970459 -59902710 + AT_rich Low_complexity Low_complexity 1 23 0 310 247 124 62 chr13 41971100 41971168 -59902001 - MLT1J LTR MaLR -215 235 173 2304 90 7 0 chr13 41971168 41971469 -59901700 + AluSx SINE Alu 1 303 -9 310 247 124 62 chr13 41971469 41971594 -59901575 - MLT1J LTR MaLR -277 173 64 1838 152 37 35 chr13 41971745 41972119 -59901050 + THE1C LTR MaLR 1 375 0 279 0 0 0 chr13 41972176 41972207 -59900962 + (CA)n Simple_repeat Simple_repeat 2 32 0 1173 290 65 43 chr13 41972263 41972738 -59900431 + MLT2D LTR ERVL 1 476 -44 234 0 0 0 chr13 41972738 41972764 -59900405 + (TG)n Simple_repeat Simple_repeat 2 27 0 1173 290 65 43 chr13 41972764 41972811 -59900358 + MLT2D LTR ERVL 476 520 0 31 0 0 0 chr13 41972821 41972852 -59900317 + AT_rich Low_complexity Low_complexity 1 31 0 760 300 33 29 chr13 41973834 41974141 -59899028 - HAL1b LINE L1 -796 552 245 2019 166 58 19 chr13 41975946 41976362 -59896807 - MSTB1 LTR MaLR 0 432 1 2023 136 0 13 chr13 41977141 41977449 -59895720 - AluSx SINE Alu -8 304 1 189 0 0 0 chr13 41978049 41978070 -59895099 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2119 183 21 38 chr13 41978485 41978911 -59894258 - MER74A LTR ERVL -137 421 3 532 176 138 58 chr13 41979026 41979256 -59893913 - SATR1 Satellite Satellite -111 248 1 1243 109 97 15 chr13 41979256 41979364 -59893805 - pTR5 LTR ERV1 0 2438 2340 7690 26 0 5 chr13 41979364 41980336 -59892833 - L1PA3 LINE L1 -3 6152 5182 1243 109 97 15 chr13 41980336 41980550 -59892619 - pTR5 LTR ERV1 -98 2340 8 518 56 0 0 chr13 41980552 41980624 -59892545 + L1PA2 LINE L1 6082 6153 -2 264 130 0 0 chr13 41980785 41980831 -59892338 + (CA)n Simple_repeat Simple_repeat 2 47 0 1137 149 6 6 chr13 41981180 41981196 -59891973 + AluSg/x SINE Alu 118 133 -179 2377 67 0 41 chr13 41981196 41981512 -59891657 + AluY SINE Alu 1 303 -8 1137 149 6 6 chr13 41981512 41981676 -59891493 + AluSg/x SINE Alu 132 298 -14 224 287 22 22 chr13 41981859 41981995 -59891174 + (CATATA)n Simple_repeat Simple_repeat 3 138 0 393 22 0 0 chr13 41982243 41982289 -59890880 + (CA)n Simple_repeat Simple_repeat 2 47 0 3467 185 31 22 chr13 41983098 41984094 -59889075 - L1P4 LINE L1 -625 5541 4543 2390 132 76 38 chr13 41984149 41984595 -59888574 - MER4C LTR ERV1 0 465 3 1272 123 3 137 chr13 41984622 41984907 -59888262 - MER4C-int LTR ERV1 -9 6589 6343 6294 97 5 5 chr13 41984913 41985797 -59887372 + L1PA10 LINE L1 5268 6151 -17 207 0 0 0 chr13 41985802 41985825 -59887344 + (CAA)n Simple_repeat Simple_repeat 2 24 0 262 351 18 13 chr13 41985910 41986135 -59887034 + L1ME LINE L1 5523 5748 -373 216 158 0 0 chr13 41986263 41986301 -59886868 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr13 41986489 41986518 -59886651 + AT_rich Low_complexity Low_complexity 1 29 0 222 150 0 0 chr13 41986585 41986625 -59886544 + (TC)n Simple_repeat Simple_repeat 1 40 0 2144 108 20 0 chr13 41986625 41986920 -59886249 - AluSx SINE Alu -9 303 3 26 64 0 0 chr13 41987574 41987621 -59885548 + AT_rich Low_complexity Low_complexity 1 47 0 27 0 0 0 chr13 41987637 41987664 -59885505 + AT_rich Low_complexity Low_complexity 1 27 0 2293 100 3 0 chr13 41988620 41988920 -59884249 - AluSc SINE Alu -8 301 1 2411 62 7 13 chr13 41990354 41990662 -59882507 + AluYa5 SINE Alu 1 306 -5 231 261 14 29 chr13 41991541 41991610 -59881559 + MER5A DNA MER1_type 96 163 -26 1606 275 53 45 chr13 41991811 41992032 -59881137 - MLT1E2 LTR MaLR 0 626 408 3012 192 8 31 chr13 41992032 41992682 -59880487 + LTR27 LTR ERV1 2 636 0 1606 275 53 45 chr13 41992682 41993081 -59880088 - MLT1E2 LTR MaLR -218 408 1 227 289 106 28 chr13 41993254 41993396 -59879773 - L3 LINE CR1 -576 1001 849 2369 71 3 10 chr13 41994789 41995099 -59878070 - AluY SINE Alu -3 308 1 593 303 90 36 chr13 41995107 41995609 -59877560 - L1MC/D LINE L1 -1990 5818 5290 22 0 0 0 chr13 41995922 41995944 -59877225 + AT_rich Low_complexity Low_complexity 1 22 0 348 307 123 43 chr13 41996128 41996405 -59876764 - L1MC/D LINE L1 -1446 4700 4402 678 238 26 0 chr13 41996414 41996565 -59876604 - MLT1A2 LTR MaLR -2 372 218 512 301 97 77 chr13 41996849 41997764 -59875405 - L1MC/D LINE L1 -2313 3833 2900 2258 79 0 47 chr13 41997977 41998295 -59874874 - AluY SINE Alu -4 307 5 302 268 140 6 chr13 41998958 41999115 -59874054 + MER69 DNA AcHobo 2342 2519 -7 33 56 0 0 chr13 41999297 41999351 -59873818 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr13 41999612 41999633 -59873536 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 41999770 41999792 -59873377 + AT_rich Low_complexity Low_complexity 1 22 0 1348 187 19 66 chr13 42000563 42000950 -59872219 + MER67C LTR ERV1 20 404 -245 523 201 11 98 chr13 42000960 42001134 -59872035 + MER67D LTR ERV1 356 514 0 232 362 181 5 chr13 42001148 42001347 -59871822 - L2 LINE L2 -192 3121 2888 224 221 12 0 chr13 42001371 42001429 -59871740 - MIR3 SINE MIR -52 156 97 677 281 60 0 chr13 42001846 42002031 -59871138 + MIR SINE MIR 56 251 -11 573 209 70 67 chr13 42002201 42002517 -59870652 - L1MC5 LINE L1 -168 7793 7477 1833 101 4 30 chr13 42003308 42003575 -59869594 - AluSg SINE Alu -14 296 37 180 77 0 0 chr13 42004987 42005013 -59868156 + (GA)n Simple_repeat Simple_repeat 1 26 0 2267 110 3 0 chr13 42006534 42006835 -59866334 + AluY SINE Alu 1 302 -9 233 176 0 0 chr13 42006846 42006880 -59866289 + AluSx SINE Alu 1 34 -268 4121 137 72 47 chr13 42006880 42007782 -59865387 - pTR5 LTR ERV1 0 2606 1524 1290 183 52 57 chr13 42007779 42008355 -59864814 - pTR5 LTR ERV1 -1085 1353 741 * 4198 136 100 138 chr13 42008351 42009538 -59863631 - pTR5 LTR ERV1 -231 2029 5 1681 149 0 33 chr13 42009538 42009813 -59863356 + AluSx SINE Alu 31 296 -16 612 210 19 0 chr13 42010235 42010392 -59862777 - L1 LINE L1 -3644 3462 3303 338 60 0 20 chr13 42010505 42010555 -59862614 + (TTCCC)n Simple_repeat Simple_repeat 2 50 0 666 218 0 0 chr13 42010556 42010689 -59862480 - FLAM_C SINE Alu 0 133 1 752 232 152 24 chr13 42010694 42010905 -59862264 - L1 LINE L1 -6792 238 1 24 0 0 0 chr13 42011189 42011213 -59861956 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 42012243 42012280 -59860889 + AT_rich Low_complexity Low_complexity 1 37 0 1006 228 103 16 chr13 42012289 42012601 -59860568 + L1MD3 LINE L1 6772 7110 -885 240 258 0 62 chr13 42012605 42012702 -59860467 + MLT1F1 LTR MaLR 35 125 -442 1649 205 50 8 chr13 42012702 42013082 -59860087 + L1MD3 LINE L1 7410 7805 -190 * 4190 128 30 8 chr13 42013072 42013827 -59859342 - L1PB1 LINE L1 -4011 2852 2043 * 10144 195 17 1 chr13 42013824 42015899 -59857270 + L1PB1 LINE L1 2849 4957 -1905 9845 17 0 0 chr13 42015894 42017434 -59855735 - L1P1 LINE L1 -386 5769 4230 * 3447 3 0 0 chr13 42017431 42017816 -59855353 + L1HS LINE L1 5771 6155 0 * 5935 156 6 18 chr13 42017817 42018496 -59854673 + L1PB1 LINE L1 4949 5634 -1233 2269 92 0 20 chr13 42018496 42018791 -59854378 - AluY SINE Alu -22 289 1 5935 156 6 18 chr13 42018791 42020058 -59853111 + L1PB1 LINE L1 5634 6866 -1 1715 184 31 0 chr13 42020080 42020374 -59852795 + AluSx SINE Alu 1 303 -9 539 243 14 65 chr13 42020377 42020429 -59852740 + L1MD3 LINE L1 7791 7844 -151 12591 142 70 9 chr13 42020429 42022707 -59850462 + Tigger1 DNA MER2_type 1 2418 0 539 243 14 65 chr13 42022707 42022868 -59850301 + L1MD3 LINE L1 7844 7993 -2 7618 32 0 0 chr13 42024215 42025376 -59847793 - L1PA3 LINE L1 0 6155 4995 7506 26 1 10 chr13 42028057 42029120 -59844049 + L1PA4 LINE L1 5101 6155 0 6461 109 47 27 chr13 42029135 42029531 -59843638 + LOR1-int LTR ERV1 4370 4757 -3363 209 33 33 0 chr13 42029531 42029561 -59843608 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1720 150 4 0 chr13 42029564 42029817 -59843352 - AluSx SINE Alu -31 281 28 6461 109 47 27 chr13 42029817 42030549 -59842620 + LOR1-int LTR ERV1 4758 5524 -2596 1763 107 44 4 chr13 42030529 42030801 -59842368 + LOR1-int LTR ERV1 5782 6064 -2056 * 433 139 42 0 chr13 42030800 42030872 -59842297 + LOR1-int LTR ERV1 8030 8104 -16 * 1889 152 7 0 chr13 42030892 42031182 -59841987 - AluSx SINE Alu -20 292 1 631 99 0 11 chr13 42031222 42031313 -59841856 - HY4 scRNA scRNA -3 90 1 3992 114 57 22 chr13 42031313 42031994 -59841175 + Tigger3b DNA MER2_type 282 986 -245 203 199 38 107 chr13 42032993 42033124 -59840045 - L2 LINE L2 -81 3232 3111 267 317 127 21 chr13 42033205 42033347 -59839822 - MIR SINE MIR -87 175 19 468 307 84 0 chr13 42033535 42033701 -59839468 - MIR SINE MIR -40 222 43 185 208 75 0 chr13 42034000 42034053 -59839116 + L2 LINE L2 3203 3259 -54 230 279 199 35 chr13 42034125 42034412 -59838757 - L2 LINE L2 -697 2617 2284 237 65 0 0 chr13 42035002 42035033 -59838136 + (TTC)n Simple_repeat Simple_repeat 2 32 0 511 235 0 53 chr13 42035670 42035802 -59837367 + MER70B LTR ERVL 454 578 0 381 71 0 0 chr13 42035958 42036014 -59837155 + L1MA2 LINE L1 6249 6304 0 394 317 0 0 chr13 42036144 42036245 -59836924 - L2 LINE L2 -8 3264 3164 1998 121 3 32 chr13 42037059 42037373 -59835796 + AluSp SINE Alu 1 305 -8 277 327 25 94 chr13 42038544 42038819 -59834350 + L2 LINE L2 3046 3301 -12 207 186 0 0 chr13 42039869 42039912 -59833257 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 83 0 0 chr13 42040131 42040167 -59833002 + (TG)n Simple_repeat Simple_repeat 1 36 0 348 325 167 30 chr13 42040745 42041080 -59832089 + L2 LINE L2 2828 3208 -105 24 32 0 0 chr13 42041123 42041154 -59832015 + AT_rich Low_complexity Low_complexity 1 31 0 367 280 126 6 chr13 42043410 42043585 -59829584 + MIR SINE MIR 51 246 -16 369 221 39 0 chr13 42043872 42043949 -59829220 - MLT1A1 LTR MaLR -2 363 284 * 1207 190 29 37 chr13 42043948 42044190 -59828979 - MLT1A1 LTR MaLR -42 323 84 23 0 0 0 chr13 42044571 42044594 -59828575 + AT_rich Low_complexity Low_complexity 1 23 0 227 245 14 18 chr13 42044745 42044966 -59828203 + (TA)n Simple_repeat Simple_repeat 1 220 0 2281 106 0 0 chr13 42045778 42046080 -59827089 - AluSx SINE Alu -9 303 2 30 0 0 0 chr13 42046613 42046643 -59826526 + AT_rich Low_complexity Low_complexity 1 30 0 533 274 178 0 chr13 42046801 42046998 -59826171 - MIR SINE MIR -8 254 23 28 0 0 0 chr13 42047135 42047163 -59826006 + AT_rich Low_complexity Low_complexity 1 28 0 831 211 123 55 chr13 42047938 42048372 -59824797 - MLT1D LTR MaLR -18 487 1 3591 161 9 3 chr13 42048683 42049328 -59823841 - L1MA4 LINE L1 -14 6286 5638 567 222 105 0 chr13 42050424 42050586 -59822583 - MIR SINE MIR -11 251 73 237 322 23 0 chr13 42051250 42051337 -59821832 - L2 LINE L2 0 3272 3184 2326 125 19 14 chr13 42051614 42051974 -59821195 - THE1B LTR MaLR 0 364 3 353 325 30 57 chr13 42052134 42052469 -59820700 - L1MC/D LINE L1 -2215 5593 5268 1770 169 38 11 chr13 42054945 42055312 -59817857 + L1MA8 LINE L1 5913 6289 -2 1206 218 17 4 chr13 42055541 42055780 -59817389 + MSTD LTR MaLR 155 396 0 21 0 0 0 chr13 42055905 42055926 -59817243 + AT_rich Low_complexity Low_complexity 1 21 0 225 384 44 30 chr13 42056027 42056230 -59816939 - L3 LINE CR1 -321 1256 1051 192 321 85 45 chr13 42056234 42056458 -59816711 - L3 LINE CR1 -1190 387 155 22 35 0 0 chr13 42056951 42056980 -59816189 + AT_rich Low_complexity Low_complexity 1 29 0 366 157 60 0 chr13 42056980 42057063 -59816106 + L1MA8 LINE L1 6113 6200 -91 4343 237 34 21 chr13 42057165 42058752 -59814417 - L1MD2 LINE L1 -10 6767 5160 189 195 0 0 chr13 42058884 42058925 -59814244 + (TA)n Simple_repeat Simple_repeat 2 42 0 1921 227 13 11 chr13 42058976 42059434 -59813735 - L1MC3 LINE L1 -167 7618 7160 1616 237 94 36 chr13 42059451 42060135 -59813034 + L1M4 LINE L1 4173 4895 -1251 289 316 12 0 chr13 42060148 42060316 -59812853 + L1M4 LINE L1 4969 5138 -1008 21 95 0 0 chr13 42060381 42060444 -59812725 + AT_rich Low_complexity Low_complexity 1 63 0 6083 263 34 23 chr13 42060663 42063040 -59810129 - L1MD2 LINE L1 -1914 4650 2278 1418 264 14 0 chr13 42063041 42063333 -59809836 + HERV3 LTR ERV1 8012 8307 -119 1253 203 33 25 chr13 42063333 42063609 -59809560 + MLT1A2 LTR MaLR 97 374 0 3007 279 50 41 chr13 42063624 42065005 -59808164 - L1MD2 LINE L1 -4634 1930 564 1581 169 191 8 chr13 42065005 42065367 -59807802 - MSTA LTR MaLR 0 428 1 9133 152 7 34 chr13 42065367 42066989 -59806180 - MSTA-int LTR MaLR 0 1580 3 1444 175 194 6 chr13 42066991 42067351 -59805818 - MSTA LTR MaLR 0 428 1 3007 279 50 41 chr13 42067351 42067870 -59805299 - L1MD2 LINE L1 -6000 564 1 738 199 0 0 chr13 42069212 42069343 -59803826 - FLAM_A SINE Alu -2 131 1 238 331 79 14 chr13 42069343 42069482 -59803687 + L2 LINE L2 1873 2020 -1294 964 120 35 0 chr13 42069522 42069664 -59803505 - AluJb SINE Alu -9 303 157 335 373 86 25 chr13 42069959 42070321 -59802848 + L2 LINE L2 2521 2904 -410 198 59 20 78 chr13 42071305 42071356 -59801813 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 24 0 0 0 chr13 42071362 42071386 -59801783 + AT_rich Low_complexity Low_complexity 1 24 0 189 171 0 0 chr13 42071401 42071436 -59801733 + (TA)n Simple_repeat Simple_repeat 2 36 0 331 240 34 0 chr13 42071477 42071623 -59801546 + (TA)n Simple_repeat Simple_repeat 2 152 0 248 197 14 28 chr13 42072658 42072729 -59800440 + Charlie7 DNA MER1_type 40 109 -2503 589 297 38 55 chr13 42072956 42073192 -59799977 + MIR SINE MIR 6 237 -25 510 129 0 0 chr13 42073741 42073826 -59799343 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 396 340 126 29 chr13 42073905 42074395 -59798774 + L2 LINE L2 2603 3144 -169 184 135 19 19 chr13 42074580 42074632 -59798537 + (CA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr13 42074678 42074717 -59798452 + AT_rich Low_complexity Low_complexity 1 39 0 540 81 0 0 chr13 42077506 42077580 -59795589 + (TG)n Simple_repeat Simple_repeat 2 75 0 1710 97 0 0 chr13 42077997 42078214 -59794955 + AluSc SINE Alu 1 217 -92 1220 218 50 88 chr13 42078505 42078905 -59794264 + MLT1B LTR MaLR 1 385 -5 446 33 17 0 chr13 42078905 42078965 -59794204 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 191 279 0 0 chr13 42079535 42079578 -59793591 - MIR SINE MIR -133 129 87 477 321 82 53 chr13 42079776 42080190 -59792979 + MLT1K LTR MaLR 157 582 -6 13890 139 32 22 chr13 42080255 42081434 -59791735 + Tigger1 DNA MER2_type 24 1191 -1227 2304 108 0 0 chr13 42081434 42081729 -59791440 - AluSg SINE Alu -15 295 1 13890 139 32 22 chr13 42081729 42082922 -59790247 + Tigger1 DNA MER2_type 1191 2418 0 305 353 26 9 chr13 42084734 42084850 -59788319 - MIR SINE MIR -113 149 32 903 217 0 0 chr13 42084887 42085053 -59788116 + MER58A DNA MER1_type 43 208 -16 828 224 112 0 chr13 42136988 42137184 -59735985 + MLT1E1 LTR MaLR 433 650 -4 22 80 0 0 chr13 42138033 42138083 -59735086 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr13 42138632 42138654 -59734515 + AT_rich Low_complexity Low_complexity 1 22 0 1787 167 10 3 chr13 42139013 42139319 -59733850 - AluJb SINE Alu -4 308 1 28 61 0 0 chr13 42140716 42140765 -59732404 + AT_rich Low_complexity Low_complexity 1 49 0 1716 174 3 23 chr13 42140765 42141069 -59732100 - AluJb SINE Alu -14 298 1 627 297 116 14 chr13 42141152 42141428 -59731741 + MLT1I LTR MaLR 106 409 0 293 0 27 0 chr13 42143718 42143755 -59729414 + (TA)n Simple_repeat Simple_repeat 1 38 0 28 29 0 0 chr13 42143899 42143934 -59729235 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 42145005 42145051 -59728118 + AT_rich Low_complexity Low_complexity 1 46 0 366 257 124 0 chr13 42145222 42145335 -59727834 - MIR SINE MIR -109 153 27 241 312 64 52 chr13 42147115 42147288 -59725881 + MIR SINE MIR 74 248 -14 1447 201 3 24 chr13 42147293 42147587 -59725582 - AluJo SINE Alu -24 288 1 352 226 32 90 chr13 42147787 42147942 -59725227 + LTR52 LTR ERVL 1 146 -275 900 158 50 0 chr13 42147961 42148100 -59725069 - FRAM SINE Alu -30 146 1 1335 249 52 9 chr13 42148302 42148583 -59724586 + MER20B DNA MER1_type 231 540 -243 2417 43 0 0 chr13 42148583 42148896 -59724273 - AluY SINE Alu 0 313 1 1335 249 52 9 chr13 42148896 42149058 -59724111 + MER20B DNA MER1_type 540 694 -89 267 31 0 0 chr13 42149059 42149091 -59724078 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1844 58 0 73 chr13 42149093 42149353 -59723816 - AluY SINE Alu -32 279 39 21 36 0 0 chr13 42150158 42150186 -59722983 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 42150739 42150771 -59722398 + AT_rich Low_complexity Low_complexity 1 32 0 348 332 96 18 chr13 42150789 42151018 -59722151 - MIR SINE MIR 0 262 16 22 56 0 0 chr13 42151042 42151078 -59722091 + AT_rich Low_complexity Low_complexity 1 36 0 2267 85 0 3 chr13 42152209 42152515 -59720654 - AluSc SINE Alu -4 305 1 215 211 21 74 chr13 42152842 42152937 -59720232 + MIR SINE MIR 117 206 -56 315 344 129 12 chr13 42155177 42155340 -59717829 + L2 LINE L2 3090 3271 -1 1996 116 17 7 chr13 42155537 42155830 -59717339 - AluSx SINE Alu -16 296 1 26 0 0 0 chr13 42156618 42156644 -59716525 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr13 42156713 42156750 -59716419 + AT_rich Low_complexity Low_complexity 1 37 0 216 97 0 0 chr13 42157234 42157265 -59715904 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 317 169 26 0 chr13 42157267 42157344 -59715825 + (TATG)n Simple_repeat Simple_repeat 4 82 0 29 47 0 0 chr13 42157486 42157529 -59715640 + AT_rich Low_complexity Low_complexity 1 43 0 240 316 60 51 chr13 42157701 42157818 -59715351 + MIR SINE MIR 32 149 -59 430 304 17 33 chr13 42158738 42158919 -59714250 + MER5B DNA MER1_type 1 178 0 267 103 0 0 chr13 42159034 42159073 -59714096 + (TG)n Simple_repeat Simple_repeat 2 40 0 229 297 158 20 chr13 42159998 42160200 -59712969 + LTR50 LTR ERVL 10 239 -556 465 259 37 107 chr13 42160237 42160592 -59712577 + LTR33A LTR ERVL 194 523 0 430 257 0 9 chr13 42160861 42160966 -59712203 - MER45A DNA AcHobo 0 178 75 1598 170 41 4 chr13 42161319 42161609 -59711560 + AluJb SINE Alu 3 302 0 3515 180 113 81 chr13 42162807 42163795 -59709374 - LTR28 LTR ERV1 0 1020 1 614 287 82 20 chr13 42163797 42164090 -59709079 - L1ME3A LINE L1 -18 6152 5842 2699 84 0 3 chr13 42165006 42165362 -59707807 + THE1A LTR MaLR 1 355 0 23 78 0 0 chr13 42166082 42166133 -59707036 + AT_rich Low_complexity Low_complexity 1 51 0 249 347 48 40 chr13 42166301 42166425 -59706744 - L2 LINE L2 -4 3268 3144 4412 121 38 13 chr13 42168265 42168968 -59704201 - HSMAR2 DNA Mariner -1 1301 581 2196 92 13 19 chr13 42168968 42169283 -59703886 + AluSq SINE Alu 1 313 0 931 110 11 22 chr13 42169283 42169299 -59703870 + (GGAA)n Simple_repeat Simple_repeat 1 195 0 931 110 11 22 chr13 42169299 42169481 -59703688 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 3617 129 12 12 chr13 42169506 42170096 -59703073 - HSMAR2 DNA Mariner -707 595 6 230 232 88 32 chr13 42170122 42170247 -59702922 + L1ME LINE L1 5707 5838 -283 195 183 16 32 chr13 42170258 42170384 -59702785 + (TA)n Simple_repeat Simple_repeat 2 125 0 23 92 0 0 chr13 42170398 42170463 -59702706 + AT_rich Low_complexity Low_complexity 1 65 0 1864 134 41 3 chr13 42172453 42172745 -59700424 + AluSg SINE Alu 1 303 -7 252 222 74 0 chr13 42173897 42173951 -59699218 - L2 LINE L2 -19 3253 3196 30 27 0 0 chr13 42175086 42175123 -59698046 + AT_rich Low_complexity Low_complexity 1 37 0 239 71 24 0 chr13 42178121 42178163 -59695006 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr13 42178446 42178481 -59694688 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 42178773 42178801 -59694368 + AT_rich Low_complexity Low_complexity 1 28 0 42 0 0 0 chr13 42179082 42179124 -59694045 + AT_rich Low_complexity Low_complexity 1 42 0 208 147 0 0 chr13 42179157 42179191 -59693978 + (T)n Simple_repeat Simple_repeat 1 34 0 42709 33 21 1 chr13 42179191 42185219 -59687950 - L1PA2 LINE L1 0 6155 7 419 336 103 17 chr13 42185420 42185652 -59687517 - MIR SINE MIR -9 253 2 33 0 0 0 chr13 42185675 42185708 -59687461 + AT_rich Low_complexity Low_complexity 1 33 0 467 159 38 6 chr13 42185743 42185900 -59687269 + (TA)n Simple_repeat Simple_repeat 1 162 0 1979 143 61 47 chr13 42185907 42186333 -59686836 - L1MA8 LINE L1 -4 6287 5856 1984 208 74 11 chr13 42186686 42187161 -59686008 - LTR22 LTR ERVK -4 505 1 2004 135 0 0 chr13 42188564 42188852 -59684317 - AluY SINE Alu -23 288 1 2994 125 16 57 chr13 42189029 42189525 -59683644 + LTR43 LTR ERV1 1 476 -126 3973 129 58 48 chr13 42189528 42190305 -59682864 - LTR1 LTR ERV1 0 785 1 927 86 0 0 chr13 42190347 42190475 -59682694 + LTR43 LTR ERV1 475 602 0 372 303 99 13 chr13 42191436 42191588 -59681581 - MIR SINE MIR -93 169 5 208 315 99 45 chr13 42191603 42191714 -59681455 - L2 LINE L2 -7 3306 3190 333 292 55 81 chr13 42192213 42192610 -59680559 + L1MC4a LINE L1 5523 5909 -1899 35 71 0 0 chr13 42193235 42193305 -59679864 + AT_rich Low_complexity Low_complexity 1 70 0 283 207 77 0 chr13 42194347 42194419 -59678750 + AluS SINE Alu 1 69 -234 1088 131 61 28 chr13 42194419 42194633 -59678536 + LTR12 LTR ERV1 39 259 -455 327 297 0 0 chr13 42194678 42194779 -59678390 + LTR30 LTR ERV1 524 624 -98 657 202 25 0 chr13 42194779 42194898 -59678271 + LTR12 LTR ERV1 359 480 -234 1636 132 0 20 chr13 42194899 42195149 -59678020 + AluSc SINE Alu 31 275 -34 926 195 32 20 chr13 42195716 42196110 -59677059 + L1MC4a LINE L1 7062 7510 -298 372 259 29 7 chr13 42196134 42196273 -59676896 + L1MC4a LINE L1 7662 7803 -5 332 363 73 16 chr13 42196424 42196672 -59676497 - L1 LINE L1 -1145 5001 4740 2242 111 0 3 chr13 42197058 42197364 -59675805 + AluSq SINE Alu 1 305 -8 255 277 30 40 chr13 42197409 42197510 -59675659 + L1MEd LINE L1 674 773 -5432 1986 77 9 77 chr13 42197612 42197903 -59675266 + AluY SINE Alu 1 269 -42 369 43 0 0 chr13 42197903 42197950 -59675219 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1986 77 9 77 chr13 42197950 42197984 -59675185 + AluY SINE Alu 269 304 -7 404 296 105 38 chr13 42198025 42198339 -59674830 + L1MEd LINE L1 1046 1380 -5016 1090 296 132 25 chr13 42198599 42199218 -59673951 + L2 LINE L2 2365 3037 -235 235 262 115 0 chr13 42199299 42199360 -59673809 + L2 LINE L2 3213 3280 -33 196 314 14 0 chr13 42199360 42199430 -59673739 + L2 LINE L2 3241 3311 -2 283 246 16 56 chr13 42199437 42199563 -59673606 + HAL1 LINE L1 1524 1644 -863 300 319 21 21 chr13 42200016 42200160 -59673009 + L1MEd LINE L1 2546 2689 -3526 2241 75 21 0 chr13 42200533 42200836 -59672333 + AluSp SINE Alu 1 309 0 1217 227 73 70 chr13 42200968 42201500 -59671669 + L1MC4a LINE L1 5560 6093 -1715 * 4817 126 8 18 chr13 42201497 42201567 -59671602 + L1PA15 LINE L1 5263 5332 -833 2560 147 16 19 chr13 42201567 42201996 -59671173 + MSTA LTR MaLR 1 428 0 4817 126 8 18 chr13 42201996 42202702 -59670467 + L1PA15 LINE L1 5332 6031 -134 391 136 0 0 chr13 42202707 42202773 -59670396 + L1PA16 LINE L1 6097 6162 -4 338 268 53 91 chr13 42202873 42203138 -59670031 - L1MC4a LINE L1 -1544 6658 6404 248 211 11 84 chr13 42203171 42203266 -59669903 - L1MC4a LINE L1 -2050 6152 6065 728 256 18 0 chr13 42203300 42203464 -59669705 - L1MC4a LINE L1 -2127 6075 5909 1934 214 21 3 chr13 42203544 42203918 -59669251 + MLT1B LTR MaLR 3 383 -7 785 269 45 11 chr13 42203969 42204344 -59668825 + L1MEd LINE L1 2715 3102 -3113 986 294 125 22 chr13 42204345 42204828 -59668341 + HERV16 LTR ERVL 1974 2562 -2646 2536 109 67 5 chr13 42204828 42205231 -59667938 - MSTA LTR MaLR 0 428 1 986 294 125 22 chr13 42205231 42205340 -59667829 + HERV16 LTR ERVL 2562 2658 -2550 477 211 96 0 chr13 42205708 42205864 -59667305 - L1MC4a LINE L1 -1086 5454 5284 720 275 67 49 chr13 42205876 42206015 -59667154 - L1MC4a LINE L1 -1386 5154 5019 333 0 0 0 chr13 42206015 42206052 -59667117 + (CA)n Simple_repeat Simple_repeat 2 38 0 720 275 67 49 chr13 42206052 42206483 -59666686 - L1MC4a LINE L1 -1521 5019 4574 1311 189 4 48 chr13 42206533 42206803 -59666366 + AluJo SINE Alu 1 258 -54 2073 267 39 17 chr13 42206804 42207519 -59665650 - L1MC4a LINE L1 -2045 4495 3765 410 266 84 56 chr13 42207521 42207664 -59665505 + MLT1C LTR MaLR 230 376 -91 8146 216 65 34 chr13 42207697 42208086 -59665083 - L1MC4a LINE L1 -4153 2387 2011 2012 126 0 14 chr13 42208086 42208379 -59664790 + AluSx SINE Alu 5 293 -19 8146 216 65 34 chr13 42208379 42210194 -59662975 - L1MC4a LINE L1 -4529 2011 115 232 387 73 0 chr13 42211053 42211177 -59661992 + L3b LINE CR1 1396 1528 -55 21 0 0 0 chr13 42211407 42211428 -59661741 + AT_rich Low_complexity Low_complexity 1 21 0 3676 93 205 0 chr13 42211950 42212521 -59660648 - LTR12 LTR ERV1 0 688 1 1363 166 36 0 chr13 42212769 42212992 -59660177 + AluJo SINE Alu 1 231 -81 285 140 0 40 chr13 42213058 42213108 -59660061 + AluJo SINE Alu 241 288 -14 28 0 0 0 chr13 42213112 42213140 -59660029 + AT_rich Low_complexity Low_complexity 1 28 0 2358 153 66 18 chr13 42214200 42214637 -59658532 + LOR1b LTR ERV1 1 458 -3 327 96 0 0 chr13 42214637 42214689 -59658480 + (CA)n Simple_repeat Simple_repeat 2 53 0 31 0 0 0 chr13 42214836 42214867 -59658302 + AT_rich Low_complexity Low_complexity 1 31 0 2063 120 0 0 chr13 42214965 42215276 -59657893 - AluY SINE Alu 0 311 1 244 417 48 21 chr13 42215743 42216033 -59657136 - L2 LINE L2 -166 3106 2809 3756 137 33 80 chr13 42216155 42216978 -59656191 + LTR1 LTR ERV1 1 784 -1 448 257 84 55 chr13 42217073 42217275 -59655894 - L2 LINE L2 -1241 2073 1866 689 84 19 19 chr13 42217489 42217596 -59655573 + LTR23 LTR ERV1 1 107 -330 538 92 0 0 chr13 42217599 42217675 -59655494 + LTR24 LTR ERV1 392 467 0 1773 157 108 59 chr13 42217916 42218325 -59654844 + LTR49 LTR ERV1 7 435 -160 297 159 58 29 chr13 42218306 42218375 -59654794 + LTR48 LTR ERV1 602 672 -115 * 6962 140 199 19 chr13 42218379 42219817 -59653352 + pTR5 LTR ERV1 742 2438 0 688 123 9 9 chr13 42219821 42219935 -59653234 + LTR49 LTR ERV1 482 595 0 4730 212 69 52 chr13 42219937 42221290 -59651879 + LTR49-int LTR ERV1 1 1376 -4955 352 186 28 117 chr13 42221827 42221972 -59651197 + LTR49-int LTR ERV1 1590 1721 -4610 1106 175 130 33 chr13 42222006 42222337 -59650832 - LTR49 LTR ERV1 0 595 238 2320 211 30 18 chr13 42222394 42222892 -59650277 + LTR49-int LTR ERV1 1730 2233 -4098 2193 175 82 62 chr13 42222995 42223578 -59649591 + LTR49 LTR ERV1 1 595 0 209 301 88 26 chr13 42223610 42223723 -59649446 - L2 LINE L2 -1497 1817 1698 214 244 0 0 chr13 42223724 42223765 -59649404 + polypyrimidine Low_complexity Low_complexity 2 42 0 1678 176 17 3 chr13 42224101 42224391 -59648778 - AluJb SINE Alu -18 294 1 279 0 0 0 chr13 42224764 42224795 -59648374 + (TG)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr13 42226404 42226425 -59646744 + (TA)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chr13 42226454 42226484 -59646685 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr13 42226619 42226652 -59646517 + AT_rich Low_complexity Low_complexity 1 33 0 414 276 76 36 chr13 42226683 42226933 -59646236 + L1MC4 LINE L1 5255 5514 -2294 377 257 186 9 chr13 42226946 42227156 -59646013 + L1MC4 LINE L1 5655 5901 -1907 2289 224 107 84 chr13 42227220 42227946 -59645223 + L1ME1 LINE L1 3909 4617 -1549 2083 117 7 3 chr13 42227946 42228246 -59644923 - AluSx SINE Alu -10 302 2 2289 224 107 84 chr13 42228246 42228750 -59644419 + L1ME1 LINE L1 4617 5108 -1058 1832 134 55 7 chr13 42228750 42229041 -59644128 - AluSx SINE Alu -7 305 1 2289 224 107 84 chr13 42229041 42229966 -59643203 + L1ME1 LINE L1 5108 6161 -5 239 316 46 35 chr13 42229989 42230163 -59643006 + L1MC4 LINE L1 6935 7110 -932 549 175 0 10 chr13 42231282 42231379 -59641790 + MER4A LTR ERV1 1 96 -568 1617 122 3 81 chr13 42231381 42231745 -59641424 + MER4A LTR ERV1 261 664 0 197 280 235 8 chr13 42231809 42231941 -59641228 - MIR SINE MIR 0 262 101 342 0 0 0 chr13 42233431 42233469 -59639700 + (TG)n Simple_repeat Simple_repeat 2 39 0 192 333 121 50 chr13 42234368 42234467 -59638702 + L2 LINE L2 3149 3254 -18 281 293 130 8 chr13 42234624 42234747 -59638422 - L2 LINE L2 -8 3305 3168 22 56 0 0 chr13 42235453 42235489 -59637680 + AT_rich Low_complexity Low_complexity 1 36 0 11187 159 53 6 chr13 42236643 42238634 -59634535 - Ricksha_c DNA DNA -13 2033 8 1737 220 8 3 chr13 42238703 42239066 -59634103 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr13 42239215 42239244 -59633925 + AT_rich Low_complexity Low_complexity 1 29 0 298 211 11 21 chr13 42239310 42239405 -59633764 + (CATA)n Simple_repeat Simple_repeat 3 96 0 345 340 40 67 chr13 42239922 42240222 -59632947 + LTR16A LTR ERVL 149 440 -10 278 287 66 59 chr13 42241087 42241223 -59631946 - L3 LINE CR1 -1018 559 423 324 341 54 45 chr13 42241840 42242046 -59631123 + LTR16C LTR ERVL 158 370 -121 2098 204 35 2 chr13 42242046 42242498 -59630671 + MLT1C LTR MaLR 1 467 0 324 341 54 45 chr13 42242498 42242622 -59630547 + LTR16C LTR ERVL 370 491 0 208 45 119 0 chr13 42243499 42243566 -59629603 + (TA)n Simple_repeat Simple_repeat 1 75 0 247 157 36 24 chr13 42243571 42243654 -59629515 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 520 54 124 2 chr13 42243654 42244112 -59629057 + (TA)n Simple_repeat Simple_repeat 1 513 0 1125 213 143 27 chr13 42244373 42244701 -59628468 - MLT1A2 LTR MaLR -4 370 5 471 178 195 81 chr13 42244773 42244947 -59628222 + MLT1A1 LTR MaLR 1 194 -171 216 0 0 0 chr13 42245118 42245142 -59628027 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 42245676 42245705 -59627464 + AT_rich Low_complexity Low_complexity 1 29 0 191 308 39 13 chr13 42247223 42247301 -59625868 - L3 LINE CR1 -870 707 628 217 371 57 0 chr13 42247453 42247558 -59625611 - MIR SINE MIR -96 166 56 220 319 126 25 chr13 42248758 42248877 -59624292 - L3 LINE CR1 -1081 496 366 2012 114 0 13 chr13 42249915 42250213 -59622956 - AluSg SINE Alu 0 310 17 242 125 21 0 chr13 42250288 42250336 -59622833 + (TA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 42250421 42250442 -59622727 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 42250869 42250900 -59622269 + AT_rich Low_complexity Low_complexity 1 31 0 248 241 26 103 chr13 42251503 42251619 -59621550 + L3 LINE CR1 1464 1570 -7 185 382 11 0 chr13 42252634 42252723 -59620446 + L2 LINE L2 1493 1582 -1732 409 292 130 35 chr13 42253430 42253714 -59619455 + MLT1J1 LTR MaLR 21 331 -115 21 0 0 0 chr13 42253779 42253800 -59619369 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr13 42254540 42254568 -59618601 + (TG)n Simple_repeat Simple_repeat 1 28 0 2780 76 0 0 chr13 42255069 42255424 -59617745 + THE1A LTR MaLR 1 355 0 602 272 130 47 chr13 42257101 42257355 -59615814 + L3 LINE CR1 246 520 -1057 714 199 82 0 chr13 42258038 42258184 -59614985 + MER3 DNA MER1_type 48 205 -4 478 222 0 0 chr13 42258145 42258235 -59614934 - MER3 DNA MER1_type -119 90 1 * 9433 183 35 22 chr13 42259238 42261312 -59611857 - L1MA7 LINE L1 -5 6286 4239 195 42 0 0 chr13 42261312 42261336 -59611833 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 9433 183 35 22 chr13 42261336 42262103 -59611066 - L1MA7 LINE L1 -2052 4239 3396 2365 83 7 0 chr13 42262103 42262403 -59610766 - AluSc SINE Alu -5 304 3 9433 183 35 22 chr13 42262403 42262527 -59610642 - L1MA7 LINE L1 -2895 3396 3275 2132 84 3 52 chr13 42262534 42262844 -59610325 - AluSg SINE Alu -15 295 1 436 203 156 0 chr13 42264510 42264638 -59608531 - MER53 DNA DNA -2 187 40 261 330 80 35 chr13 42265039 42265239 -59607930 + MIR SINE MIR 37 245 -17 253 340 32 11 chr13 42265340 42265434 -59607735 + L2 LINE L2 3218 3313 0 28 48 0 0 chr13 42265898 42265940 -59607229 + AT_rich Low_complexity Low_complexity 1 42 0 450 367 20 14 chr13 42266654 42266917 -59606252 - MIR SINE MIR 0 262 1 325 277 60 36 chr13 42267400 42267566 -59605603 - L1MC/D LINE L1 -2333 5475 5306 204 40 0 0 chr13 42267705 42267730 -59605439 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr13 42267730 42267754 -59605415 + AT_rich Low_complexity Low_complexity 1 24 0 265 306 107 42 chr13 42267817 42268173 -59604996 - L1MC/D LINE L1 -1096 5050 4672 207 299 54 68 chr13 42268831 42268978 -59604191 + L2 LINE L2 3164 3308 -5 2195 153 5 13 chr13 42270383 42270756 -59602413 + THE1C LTR MaLR 5 374 -1 1745 169 18 70 chr13 42273126 42273510 -59599659 - MLT1A1 LTR MaLR -1 364 1 789 167 8 0 chr13 42273902 42274034 -59599135 - FLAM_C SINE Alu 0 133 1 288 263 111 20 chr13 42274132 42274231 -59598938 - MIR SINE MIR -91 171 64 588 292 20 12 chr13 42274232 42274475 -59598694 - L1M1 LINE L1 -499 5667 5452 611 270 63 58 chr13 42274477 42274840 -59598329 - MER65A LTR ERV1 -2 443 79 360 269 76 0 chr13 42274844 42274963 -59598206 - MER65A LTR ERV1 -317 128 1 640 229 20 7 chr13 42274965 42275118 -59598051 - L1ME LINE L1 -713 5453 5299 787 273 51 51 chr13 42275118 42275615 -59597554 + L1ME1 LINE L1 5663 6315 -19 222 156 0 0 chr13 42275633 42275678 -59597491 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 899 136 0 0 chr13 42277122 42277254 -59595915 + AluY SINE Alu 1 132 -179 21 0 0 0 chr13 42277254 42277275 -59595894 + AT_rich Low_complexity Low_complexity 1 21 0 1992 88 64 0 chr13 42277275 42277558 -59595611 + AluY SINE Alu 1 301 -10 349 161 0 0 chr13 42277675 42277737 -59595432 + MER114 LTR ERV 22 83 -565 3347 125 101 92 chr13 42277738 42278615 -59594554 + pTR5 LTR ERV1 833 2021 -417 311 274 10 0 chr13 42278615 42278717 -59594452 + LTR30 LTR ERV1 541 643 -79 1448 91 4 4 chr13 42278717 42278941 -59594228 + pTR5 LTR ERV1 67 392 -2046 581 250 109 18 chr13 42278941 42279217 -59593952 + MER114 LTR ERV 80 380 -268 290 139 56 42 chr13 42279295 42279367 -59593802 - MER113 DNA MER1_type? -332 189 117 875 238 15 5 chr13 42279368 42279574 -59593595 - L1PA16 LINE L1 -1866 4280 4073 5098 175 29 11 chr13 42279576 42281404 -59591765 + L1PA16 LINE L1 4271 6165 -1 473 240 54 85 chr13 42281596 42281728 -59591441 + MER114 LTR ERV 387 509 -139 2085 128 0 19 chr13 42281728 42282040 -59591129 - AluSq SINE Alu -7 306 1 473 240 54 85 chr13 42282040 42282165 -59591004 + MER114 LTR ERV 509 636 -12 28 29 0 0 chr13 42282167 42282202 -59590967 + AT_rich Low_complexity Low_complexity 1 35 0 456 19 0 0 chr13 42282364 42282417 -59590752 + (CA)n Simple_repeat Simple_repeat 2 54 0 26 30 0 0 chr13 42283412 42283445 -59589724 + AT_rich Low_complexity Low_complexity 1 33 0 2016 55 92 22 chr13 42284996 42285267 -59587902 - AluY SINE Alu -21 290 1 2185 117 10 0 chr13 42285978 42286285 -59586884 - AluSx SINE Alu -2 310 1 198 360 55 43 chr13 42286683 42286771 -59586398 + L2 LINE L2 3097 3189 -83 2308 82 16 0 chr13 42286771 42287077 -59586092 - AluY SINE Alu 0 311 1 198 360 55 43 chr13 42287077 42287152 -59586017 + L2 LINE L2 3189 3262 -10 257 75 0 25 chr13 42288545 42288585 -59584584 + MADE1 DNA Mariner 42 80 0 2104 100 13 13 chr13 42289070 42289379 -59583790 - AluSc SINE Alu 0 309 1 14211 161 21 1 chr13 42289380 42289895 -59583274 - L1PA11 LINE L1 -4 7608 7105 213 65 0 0 chr13 42289895 42289926 -59583243 + (TTATA)n Simple_repeat Simple_repeat 5 35 0 14211 161 21 1 chr13 42289926 42292811 -59580358 - L1PA11 LINE L1 -507 7105 4144 7777 229 31 32 chr13 42292813 42295826 -59577343 - L1PA11 LINE L1 -3486 4098 1 2035 139 150 8 chr13 42295836 42296210 -59576959 + MSTA LTR MaLR 2 428 0 364 345 35 0 chr13 42296211 42296356 -59576813 - MIR SINE MIR -61 201 52 2147 149 13 10 chr13 42296401 42296789 -59576380 - L1MA4 LINE L1 -1 6299 5911 200 322 0 0 chr13 42297005 42297064 -59576105 - MIR SINE MIR 0 262 204 844 231 20 40 chr13 42299241 42299440 -59573729 + Charlie1a DNA MER1_type 20 214 -1241 28 29 0 0 chr13 42299454 42299489 -59573680 + AT_rich Low_complexity Low_complexity 1 35 0 1595 229 54 19 chr13 42300212 42300622 -59572547 + MLT1D LTR MaLR 81 504 -1 24 0 0 0 chr13 42301133 42301157 -59572012 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 42301266 42301287 -59571882 + AT_rich Low_complexity Low_complexity 1 21 0 1191 259 115 17 chr13 42302409 42302869 -59570300 + MLT1D LTR MaLR 1 505 0 24 32 0 0 chr13 42303053 42303084 -59570085 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 42303370 42303393 -59569776 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 42303420 42303457 -59569712 + AT_rich Low_complexity Low_complexity 1 37 0 1681 154 29 7 chr13 42303645 42303963 -59569206 - AluJb SINE Alu 0 324 1 2399 77 0 6 chr13 42303979 42304292 -59568877 - AluY SINE Alu 0 311 1 257 219 114 81 chr13 42304292 42304415 -59568754 - HAL1 LINE L1 -1 2506 2380 342 269 113 38 chr13 42304468 42304654 -59568515 - L1MC4a LINE L1 -1849 5959 5760 186 143 0 0 chr13 42304656 42304691 -59568478 + (TG)n Simple_repeat Simple_repeat 2 36 0 180 77 0 0 chr13 42305289 42305315 -59567854 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 434 224 6 19 chr13 42306125 42306281 -59566888 + GA-rich Low_complexity Low_complexity 1 154 0 339 202 28 9 chr13 42306316 42306425 -59566744 + GA-rich Low_complexity Low_complexity 2 112 0 1998 194 0 6 chr13 42307846 42308206 -59564963 - MLT1A1 LTR MaLR -7 358 1 306 0 0 0 chr13 42308565 42308599 -59564570 + (TG)n Simple_repeat Simple_repeat 1 34 0 1920 121 75 0 chr13 42311809 42312091 -59561078 - AluSx SINE Alu -9 303 1 35 24 0 0 chr13 42312337 42312379 -59560790 + AT_rich Low_complexity Low_complexity 1 42 0 255 311 54 0 chr13 42314164 42314238 -59558931 + L2 LINE L2 3232 3309 -4 257 386 49 18 chr13 42314761 42314924 -59558245 - L2 LINE L2 -182 3090 2923 591 246 94 27 chr13 42315239 42315536 -59557633 - L1MEc LINE L1 -3927 2469 2153 993 171 6 6 chr13 42315548 42315724 -59557445 - L1PA16 LINE L1 -11 6155 5980 3506 147 78 17 chr13 42315827 42316516 -59556653 - L1PA16 LINE L1 -180 5986 5256 311 309 39 39 chr13 42316548 42316726 -59556443 - L1MEc LINE L1 -4187 2028 1851 452 254 67 36 chr13 42316750 42316974 -59556195 - L1MEc LINE L1 -4437 1959 1729 3292 104 0 4 chr13 42316979 42317442 -59555727 - L1PA14 LINE L1 -33 6128 5668 955 300 59 87 chr13 42317492 42318837 -59554332 - L1MEc LINE L1 -4718 1678 388 2028 135 7 0 chr13 42318837 42319140 -59554029 - AluSx SINE Alu -7 305 1 955 300 59 87 chr13 42319140 42319480 -59553689 - L1MEc LINE L1 -6008 388 40 225 196 0 0 chr13 42319546 42319592 -59553577 + (TATG)n Simple_repeat Simple_repeat 3 48 0 308 189 41 4 chr13 42319705 42319934 -59553235 + (TA)n Simple_repeat Simple_repeat 1 237 0 2441 51 0 7 chr13 42319935 42320229 -59552940 - AluY SINE Alu -19 292 1 1915 120 28 3 chr13 42320235 42320518 -59552651 - AluSx SINE Alu -22 290 1 221 357 0 0 chr13 42321555 42321625 -59551544 + MIR SINE MIR 71 140 -122 247 114 0 0 chr13 42321649 42321684 -59551485 + U2 snRNA snRNA 2 36 -152 2255 77 0 22 chr13 42321948 42322260 -59550909 + AluY SINE Alu 1 305 -6 291 322 83 33 chr13 42322362 42322483 -59550686 + L2 LINE L2 3169 3295 -18 2164 107 3 0 chr13 42324682 42324971 -59548198 - AluSq SINE Alu -23 290 1 22 0 0 0 chr13 42325793 42325815 -59547354 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr13 42326413 42326450 -59546719 + AT_rich Low_complexity Low_complexity 1 37 0 558 231 125 8 chr13 42326630 42326886 -59546283 - Charlie4a DNA MER1_type -81 427 142 422 101 43 0 chr13 42327240 42327309 -59545860 - LTR12 LTR ERV1 -61 653 582 3756 136 64 89 chr13 42327310 42328154 -59545015 - LTR12 LTR ERV1 -1 825 3 633 203 38 51 chr13 42328395 42328631 -59544538 - pTR5 LTR ERV1 -1463 975 743 347 299 95 7 chr13 42328787 42328924 -59544245 + HAL1 LINE L1 73 221 -2286 364 266 30 103 chr13 42328969 42329172 -59543997 + HAL1 LINE L1 332 519 -1988 264 100 0 0 chr13 42329437 42329477 -59543692 + (TG)n Simple_repeat Simple_repeat 2 41 0 322 263 0 42 chr13 42329486 42329581 -59543588 + L1MC4 LINE L1 6613 6703 -1339 1227 253 75 17 chr13 42329587 42330054 -59543115 + HAL1 LINE L1 984 1477 -1030 350 284 138 34 chr13 42330122 42330390 -59542779 + HAL1 LINE L1 2199 2494 -13 315 200 0 62 chr13 42330707 42330787 -59542382 + HAL1 LINE L1 1048 1122 -1385 389 147 27 0 chr13 42331754 42331829 -59541340 - L1PA15 LINE L1 -3 6162 6086 23 33 0 0 chr13 42332397 42332427 -59540742 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 42333045 42333075 -59540094 + AT_rich Low_complexity Low_complexity 1 30 0 263 220 0 0 chr13 42333134 42333184 -59539985 - L2 LINE L2 -3 3310 3261 2186 103 3 0 chr13 42333872 42334163 -59539006 - AluY SINE Alu -19 292 1 3104 90 4 29 chr13 42334828 42335283 -59537886 - MLT2A1 LTR ERVL 0 444 1 1599 240 70 29 chr13 42335956 42336725 -59536444 - L1ME LINE L1 -375 6183 5385 303 225 0 25 chr13 42336858 42336938 -59536231 - L1ME LINE L1 -1240 5300 5223 751 239 40 5 chr13 42336946 42337147 -59536022 + MER3 DNA MER1_type 2 209 0 302 239 276 0 chr13 42337160 42337294 -59535875 - L1ME LINE L1 -1332 5208 5038 718 196 34 14 chr13 42337307 42337455 -59535714 - FRAM SINE Alu -14 152 2 801 182 0 0 chr13 42337513 42337645 -59535524 + AluSc SINE Alu 145 276 -33 1061 244 95 112 chr13 42337645 42338478 -59534691 - L1ME LINE L1 -1538 5002 4184 307 234 28 97 chr13 42338683 42338828 -59534341 - L1ME LINE L1 -3957 2583 2449 28 0 0 0 chr13 42339038 42339066 -59534103 + AT_rich Low_complexity Low_complexity 1 28 0 379 266 107 62 chr13 42339181 42339482 -59533687 - L1M4c LINE L1 -809 1934 1406 2021 169 116 0 chr13 42339516 42339895 -59533274 + MSTA LTR MaLR 1 423 -5 29 28 0 0 chr13 42340089 42340125 -59533044 + AT_rich Low_complexity Low_complexity 1 36 0 1030 168 118 14 chr13 42340125 42340345 -59532824 - L1PA16 LINE L1 -16 6150 5908 2181 113 62 9 chr13 42340738 42341074 -59532095 - THE1B LTR MaLR -2 362 9 1445 164 34 3 chr13 42341093 42341385 -59531784 + L1MC3 LINE L1 7456 7756 -29 2527 53 0 0 chr13 42341385 42341687 -59531482 - AluY SINE Alu -9 302 1 25 51 0 0 chr13 42341687 42341726 -59531443 + AT_rich Low_complexity Low_complexity 1 39 0 1388 198 24 44 chr13 42343635 42343928 -59529241 + AluJo SINE Alu 2 288 -24 232 396 58 0 chr13 42344101 42344240 -59528929 - L3 LINE CR1 -1 1576 1430 295 237 32 122 chr13 42344325 42344481 -59528688 - MER46C DNA MER2_type -175 163 22 23 0 0 0 chr13 42344755 42344778 -59528391 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 42345224 42345249 -59527920 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr13 42345840 42345872 -59527297 + AT_rich Low_complexity Low_complexity 1 32 0 360 167 39 50 chr13 42346038 42346218 -59526951 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 856 340 61 19 chr13 42346312 42346688 -59526481 + L2 LINE L2 47 438 -2876 482 277 96 55 chr13 42346712 42346932 -59526237 + L2 LINE L2 2892 3120 -193 240 299 16 79 chr13 42347016 42347143 -59526026 - L2 LINE L2 -6 3307 3189 972 194 20 0 chr13 42347609 42347805 -59525364 + L1PB1 LINE L1 1 200 -6663 7167 96 57 11 chr13 42347807 42349402 -59523767 + L1PB1 LINE L1 636 2480 -4383 1378 126 0 0 chr13 42349402 42349600 -59523569 - THE1A LTR MaLR 0 355 158 6329 158 15 5 chr13 42349600 42351757 -59521412 + L1PB1 LINE L1 4679 6857 -10 2496 53 3 0 chr13 42351759 42352059 -59521110 - AluY SINE Alu -10 301 1 238 296 17 34 chr13 42352352 42352483 -59520686 - MIR SINE MIR -9 199 76 890 199 0 6 chr13 42352658 42352819 -59520350 - FRAM SINE Alu -6 160 1 602 187 7 7 chr13 42353861 42354000 -59519169 - L1MA7 LINE L1 -11 6280 6142 22 88 0 0 chr13 42355900 42355957 -59517212 + AT_rich Low_complexity Low_complexity 1 57 0 26 30 0 0 chr13 42356972 42357005 -59516164 + AT_rich Low_complexity Low_complexity 1 33 0 2223 105 3 0 chr13 42357269 42357565 -59515604 + AluSx SINE Alu 1 297 -15 1622 223 0 0 chr13 42357812 42358112 -59515057 + AluJb SINE Alu 1 300 -12 224 320 60 47 chr13 42358324 42358474 -59514695 - L2 LINE L2 0 3313 3162 349 302 39 8 chr13 42358696 42358825 -59514344 + MIR SINE MIR 77 209 -53 332 308 73 50 chr13 42359092 42359421 -59513748 - MLT1J2 LTR MaLR -19 390 40 231 260 0 0 chr13 42359912 42359962 -59513207 + L2 LINE L2 3263 3312 -1 * 297 358 93 27 chr13 42359955 42360363 -59512806 - L2 LINE L2 -483 2831 2397 3164 147 42 43 chr13 42360712 42361310 -59511859 - LTR1 LTR ERV1 0 785 189 1504 153 17 17 chr13 42361298 42361585 -59511584 - LTR1 LTR ERV1 -498 287 1 * 1647 141 8 0 chr13 42361628 42361869 -59511300 - HUERS-P2 LTR ERV1 0 3088 2846 * 5273 132 20 4 chr13 42361867 42362657 -59510512 - HUERS-P2 LTR ERV1 -1068 2020 1218 4088 133 60 0 chr13 42362660 42363919 -59509250 - pTR5 LTR ERV1 0 2468 1524 * 4391 190 74 38 chr13 42363916 42365034 -59508135 - HUERS-P2 LTR ERV1 -1867 1221 5 3761 131 39 89 chr13 42365037 42365864 -59507305 - LTR1 LTR ERV1 0 785 1 7531 29 0 0 chr13 42366039 42367159 -59506010 - L1PA4 LINE L1 0 6155 5033 290 263 20 61 chr13 42367771 42367870 -59505299 - MIR SINE MIR -50 212 118 288 306 12 50 chr13 42368034 42368197 -59504972 + L1MB2 LINE L1 173 503 -5800 6275 142 31 15 chr13 42368505 42368631 -59504538 + L1M1 LINE L1 4125 4248 -2057 327 49 0 0 chr13 42368631 42368672 -59504497 + (CA)n Simple_repeat Simple_repeat 1 41 0 6275 142 31 15 chr13 42368672 42370105 -59503064 + L1M1 LINE L1 4248 5719 -586 3139 239 41 91 chr13 42370125 42371928 -59501241 + L1MB2 LINE L1 777 2417 -3965 1969 145 7 0 chr13 42371928 42372218 -59500951 + AluSg SINE Alu 1 292 -18 3139 239 41 91 chr13 42372218 42372841 -59500328 + L1MB2 LINE L1 2417 3070 -3312 1590 220 67 14 chr13 42372844 42373399 -59499770 + L1MB2 LINE L1 3126 3709 -2673 2206 133 104 8 chr13 42373399 42373783 -59499386 + MSTA LTR MaLR 1 421 -7 1646 251 15 0 chr13 42373785 42374184 -59498985 + L1MB2 LINE L1 3706 4110 -2272 409 252 50 29 chr13 42374414 42374553 -59498616 - LTR43 LTR ERV1 -306 296 155 3815 240 24 14 chr13 42374726 42375801 -59497368 + L1MB2 LINE L1 4106 5191 -1191 1467 221 94 8 chr13 42375806 42376199 -59496970 + MLT2B2 LTR ERVL 1 427 -88 2876 187 31 8 chr13 42376204 42376878 -59496291 + L1MB2 LINE L1 5394 6086 -321 703 224 80 0 chr13 42376879 42377080 -59496089 + L1MB2 LINE L1 6188 6404 -3 377 333 31 25 chr13 42377591 42377750 -59495419 + MER5A DNA MER1_type 30 189 0 801 220 133 82 chr13 42377823 42377982 -59495187 - MLT1D LTR MaLR -6 499 350 2157 107 7 0 chr13 42377982 42378287 -59494882 - AluSx SINE Alu 0 307 1 801 220 133 82 chr13 42378287 42378510 -59494659 - MLT1D LTR MaLR -155 350 1 237 65 0 0 chr13 42378521 42378552 -59494617 + (CA)n Simple_repeat Simple_repeat 2 32 0 3025 147 33 2 chr13 42378711 42379195 -59493974 - MER41E LTR ERV1 0 512 14 180 111 0 0 chr13 42380575 42380602 -59492567 + (CATAT)n Simple_repeat Simple_repeat 4 30 0 455 303 87 13 chr13 42381781 42382012 -59491157 + MIR SINE MIR 2 249 -13 3966 101 13 0 chr13 42382389 42382934 -59490235 - MER41A LTR ERV1 0 554 3 205 161 0 0 chr13 42383284 42383315 -59489854 + A-rich Low_complexity Low_complexity 4 34 0 24 32 0 0 chr13 42384666 42384697 -59488472 + AT_rich Low_complexity Low_complexity 1 31 0 319 278 110 21 chr13 42384712 42384903 -59488266 - L1MDa LINE L1 -5103 1437 1230 2229 143 8 6 chr13 42385772 42386135 -59487034 - MER47A DNA MER2_type 0 366 3 25 0 0 0 chr13 42387588 42387613 -59485556 + AT_rich Low_complexity Low_complexity 1 25 0 1558 138 47 108 chr13 42387937 42388299 -59484870 - MER67D LTR ERV1 -174 340 1 183 288 9 81 chr13 42389904 42390015 -59483154 - L2 LINE L2 0 3313 3211 301 291 159 54 chr13 42392105 42392363 -59480806 + L1ME LINE L1 5543 5827 -294 1643 173 30 0 chr13 42392484 42392755 -59480414 + AluJb SINE Alu 5 283 -29 25 51 0 0 chr13 42392756 42392795 -59480374 + AT_rich Low_complexity Low_complexity 1 39 0 202 358 211 18 chr13 42394526 42394811 -59478358 + L2 LINE L2 2850 3189 -124 1202 187 88 3 chr13 42396040 42396334 -59476835 + L1MC3 LINE L1 7459 7777 -8 212 0 36 0 chr13 42397143 42397171 -59475998 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 256 255 69 29 chr13 42397793 42397895 -59475274 + MLT1J LTR MaLR 37 142 -369 678 243 276 15 chr13 42398305 42398735 -59474434 - MLT1G LTR MaLR -68 522 1 234 289 67 29 chr13 42398745 42398953 -59474216 + L1 LINE L1 2382 2597 -3549 289 264 67 63 chr13 42399119 42399403 -59473766 + L1 LINE L1 2725 3009 -3137 413 159 65 0 chr13 42399570 42399708 -59473461 + (TA)n Simple_repeat Simple_repeat 1 147 0 766 102 45 44 chr13 42399711 42400227 -59472942 + (TTATA)n Simple_repeat Simple_repeat 1 516 0 331 67 103 18 chr13 42400194 42400359 -59472810 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 509 43 105 12 chr13 42400380 42400542 -59472627 + (TA)n Simple_repeat Simple_repeat 1 177 0 198 0 0 0 chr13 42400665 42400687 -59472482 + (GA)n Simple_repeat Simple_repeat 1 22 0 327 291 150 9 chr13 42400718 42400931 -59472238 + L1 LINE L1 3289 3531 -2615 247 259 40 88 chr13 42400975 42401249 -59471920 + L1 LINE L1 4552 4812 -1334 262 227 93 0 chr13 42401292 42401367 -59471802 + L1 LINE L1 4909 4990 -1156 439 296 91 51 chr13 42401562 42401957 -59471212 + L1ME LINE L1 5257 5667 -495 24 0 0 0 chr13 42402421 42402445 -59470724 + AT_rich Low_complexity Low_complexity 1 24 0 227 281 0 18 chr13 42404133 42404190 -59468979 - L2 LINE L2 -49 3223 3168 324 336 152 48 chr13 42404513 42404979 -59468190 - L2 LINE L2 -241 3072 2553 2141 102 0 0 chr13 42405247 42405532 -59467637 - AluSg SINE Alu -3 307 23 188 275 0 0 chr13 42406642 42406682 -59466487 + L2 LINE L2 2796 2835 -479 278 352 78 8 chr13 42406872 42407000 -59466169 + L2 LINE L2 3100 3236 -36 2105 168 35 30 chr13 42407106 42407654 -59465515 + MLT2A2 LTR ERVL 1 554 0 1285 140 0 0 chr13 42408359 42408566 -59464603 + L1M1 LINE L1 5407 5613 -690 1125 180 35 0 chr13 42408567 42408795 -59464374 - L1 LINE L1 -743 6105 5870 616 203 0 0 chr13 42408794 42408912 -59464257 - L1 LINE L1 -1516 5332 5215 * 2278 181 20 23 chr13 42408914 42409401 -59463768 - L1 LINE L1 -2474 4374 3889 * 9550 193 65 42 chr13 42409399 42411590 -59461579 - L1 LINE L1 -4609 2240 1 285 250 104 47 chr13 42411736 42411928 -59461241 - L2 LINE L2 0 3313 3111 25 31 0 0 chr13 42412284 42412316 -59460853 + AT_rich Low_complexity Low_complexity 1 32 0 288 213 30 110 chr13 42415834 42415998 -59457171 + MER112 DNA MER1_type 73 223 -37 23 33 0 0 chr13 42416052 42416082 -59457087 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 42416368 42416418 -59456751 + AT_rich Low_complexity Low_complexity 1 50 0 1705 82 116 8 chr13 42417275 42417542 -59455627 - AluSc SINE Alu -13 296 1 932 253 58 14 chr13 42417699 42417976 -59455193 + L1MDa LINE L1 34 322 -6218 385 318 107 39 chr13 42418307 42418587 -59454582 - L2 LINE L2 -47 3266 2968 1198 290 303 19 chr13 42418614 42419453 -59453716 - L2 LINE L2 -451 2863 1787 602 270 57 0 chr13 42419508 42419667 -59453502 - MIR SINE MIR -14 248 81 4053 206 99 4 chr13 42421076 42422540 -59450629 + L1MB2 LINE L1 4500 6124 -47 245 285 39 18 chr13 42422680 42422810 -59450359 - MIR SINE MIR -66 142 33 220 371 8 53 chr13 42423063 42423195 -59449974 - MIR SINE MIR -63 145 20 1872 136 24 3 chr13 42423557 42423852 -59449317 - AluSq SINE Alu -11 302 2 333 153 0 0 chr13 42423908 42423980 -59449189 + CT-rich Low_complexity Low_complexity 2 73 0 25 0 0 0 chr13 42424320 42424345 -59448824 + AT_rich Low_complexity Low_complexity 1 25 0 681 278 80 55 chr13 42425980 42426419 -59446750 + MLT1J2 LTR MaLR 1 450 0 229 360 102 21 chr13 42426461 42426786 -59446383 + L2 LINE L2 706 1056 -2258 316 355 59 5 chr13 42426844 42427047 -59446122 + L2 LINE L2 1197 1410 -1904 276 157 0 0 chr13 42427178 42427229 -59445940 - MER53 DNA DNA 0 189 139 526 140 11 0 chr13 42427292 42427385 -59445784 - MER53 DNA DNA -67 122 29 261 0 0 0 chr13 42427393 42427422 -59445747 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 493 326 129 29 chr13 42427649 42428170 -59444999 + L2 LINE L2 1825 2397 -917 761 167 132 78 chr13 42429054 42429258 -59443911 - MER20 DNA MER1_type -4 215 1 1201 170 17 42 chr13 42430325 42430566 -59442603 - AluJb SINE Alu -77 235 1 412 324 190 22 chr13 42431440 42432071 -59441098 + L2 LINE L2 2554 3313 0 207 0 0 0 chr13 42432151 42432174 -59440995 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 266 241 11 0 chr13 42432222 42432309 -59440860 + GA-rich Low_complexity Low_complexity 1 88 0 2427 136 38 84 chr13 42432851 42433480 -59439689 - MER4B LTR ERV1 0 766 1 361 250 74 14 chr13 42433594 42433810 -59439359 - MER20B DNA MER1_type -7 776 548 1811 178 85 52 chr13 42433984 42434467 -59438702 - MLT1D LTR MaLR -4 501 3 678 310 212 13 chr13 42434469 42435002 -59438167 - L2 LINE L2 -1884 1430 792 216 0 0 0 chr13 42435145 42435169 -59438000 + (A)n Simple_repeat Simple_repeat 1 24 0 2011 200 21 0 chr13 42435218 42435593 -59437576 + MLT1B LTR MaLR 8 390 0 370 342 15 40 chr13 42435596 42435795 -59437374 - L2 LINE L2 -3033 281 88 377 295 54 0 chr13 42437289 42437418 -59435751 + MIR SINE MIR 119 254 -8 26 50 0 0 chr13 42437432 42437472 -59435697 + AT_rich Low_complexity Low_complexity 1 40 0 3371 111 16 14 chr13 42438922 42439427 -59433742 - MER84 LTR ERV1 0 507 2 380 153 42 14 chr13 42439427 42439499 -59433670 - MER84 LTR ERVI -433 74 1 517 294 6 6 chr13 42440061 42440224 -59432945 - MER52A LTR ERV1 0 1755 1593 * 1022 264 129 55 chr13 42440216 42440926 -59432243 - MER52A LTR ERV1 -147 489 3 274 314 38 0 chr13 42440981 42441091 -59432078 - MIR SINE MIR -58 150 56 495 67 67 0 chr13 42441598 42441673 -59431496 - MADE1 DNA Mariner 0 80 1 25 65 0 0 chr13 42441713 42441759 -59431410 + AT_rich Low_complexity Low_complexity 1 46 0 242 362 94 24 chr13 42441875 42442002 -59431167 - L2 LINE L2 0 3272 3137 312 320 40 7 chr13 42442062 42442212 -59430957 + L2 LINE L2 2486 2640 -674 209 384 13 33 chr13 42442230 42442381 -59430788 - L2 LINE L2 -153 3119 2972 4215 113 2 0 chr13 42443492 42444102 -59429067 - L1PA15 LINE L1 -1 6164 5554 491 321 183 43 chr13 42444525 42445079 -59428090 + L2 LINE L2 2241 2893 -421 213 39 0 0 chr13 42445079 42445105 -59428064 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 491 321 183 43 chr13 42445105 42445172 -59427997 + L2 LINE L2 2893 2949 -365 307 298 84 66 chr13 42445180 42445512 -59427657 - L1M4 LINE L1 -3025 3121 2784 185 100 50 0 chr13 42446276 42446316 -59426853 + T-rich Low_complexity Low_complexity 6 47 0 1945 96 81 0 chr13 42446781 42447052 -59426117 + AluSx SINE Alu 3 295 -17 277 373 93 24 chr13 42447743 42447990 -59425179 - L3 LINE CR1 -60 1517 1254 357 255 128 14 chr13 42448014 42448155 -59425014 - MER117 DNA MER1_type 0 197 41 22 0 0 0 chr13 42448179 42448201 -59424968 + AT_rich Low_complexity Low_complexity 1 22 0 378 287 16 41 chr13 42448278 42448400 -59424769 + MLT1I LTR MaLR 97 215 -194 290 347 56 56 chr13 42448564 42448901 -59424268 - L2 LINE L2 0 3313 2977 2486 59 0 7 chr13 42448950 42449257 -59423912 + AluY SINE Alu 1 305 -6 1550 351 153 18 chr13 42449303 42450993 -59422176 - L2 LINE L2 -541 2773 856 238 372 25 25 chr13 42451219 42451340 -59421829 - L3 LINE CR1 -393 1184 1064 332 391 31 0 chr13 42451539 42451667 -59421502 - MIR SINE MIR -118 144 13 229 254 0 18 chr13 42451805 42451860 -59421309 + L2 LINE L2 3255 3308 -5 * 514 328 174 10 chr13 42451859 42452249 -59420920 - L3 LINE CR1 -865 712 259 1831 170 21 24 chr13 42452505 42452881 -59420288 + THE1C LTR MaLR 1 375 0 2299 176 38 46 chr13 42453059 42453106 -59420063 - L1MA8 LINE L1 0 6291 6245 1881 141 171 8 chr13 42453106 42453474 -59419695 - MSTA LTR MaLR 0 428 1 2299 176 38 46 chr13 42453474 42453551 -59419618 - L1MA8 LINE L1 -46 6245 6169 5755 154 38 48 chr13 42453551 42454800 -59418369 + MER11B LTR ERVK 1 1236 0 2299 176 38 46 chr13 42454800 42455221 -59417948 - L1MA8 LINE L1 -122 6169 5749 2977 127 50 0 chr13 42455222 42455704 -59417465 + L1MA8 LINE L1 5254 5759 -532 23 54 0 0 chr13 42461335 42461372 -59411797 + AT_rich Low_complexity Low_complexity 1 37 0 3930 125 129 103 chr13 42461595 42463058 -59410111 - pTR5 LTR ERV1 0 2438 741 27 49 0 0 chr13 42464791 42464832 -59408337 + AT_rich Low_complexity Low_complexity 1 41 0 189 219 134 61 chr13 42465696 42465778 -59407391 - MIR SINE MIR -54 208 121 21 0 0 0 chr13 42466544 42466565 -59406604 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 42467480 42467500 -59405669 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 808 147 0 8 chr13 42468018 42468147 -59405022 - AluSq/x SINE Alu -182 131 4 236 328 144 23 chr13 42468263 42468437 -59404732 + L3 LINE CR1 1175 1369 -208 253 218 61 51 chr13 42468524 42468683 -59404486 + MIR SINE MIR 32 246 -16 2380 82 0 10 chr13 42468683 42468989 -59404180 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr13 42469005 42469027 -59404142 + AT_rich Low_complexity Low_complexity 1 22 0 270 235 29 0 chr13 42471085 42471153 -59402016 - MER103 DNA DNA -63 103 34 220 175 18 18 chr13 42471199 42471256 -59401913 + (TATAA)n Simple_repeat Simple_repeat 2 58 0 527 324 89 0 chr13 42471256 42471469 -59401700 - MIR SINE MIR -30 232 1 32 0 0 0 chr13 42471858 42471890 -59401279 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 42471979 42472000 -59401169 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr13 42472246 42472281 -59400888 + (TG)n Simple_repeat Simple_repeat 2 36 0 334 429 51 7 chr13 42472411 42472686 -59400483 - L2 LINE L2 -559 2755 2469 1279 218 20 82 chr13 42472686 42472793 -59400376 + MLT1A2 LTR MaLR 1 113 -261 2035 97 4 0 chr13 42472793 42473060 -59400109 + AluSp SINE Alu 33 300 -13 1279 218 20 82 chr13 42473060 42473212 -59399957 + MLT1A2 LTR MaLR 113 231 -143 2297 154 3 3 chr13 42473212 42473576 -59399593 + THE1B LTR MaLR 1 364 0 1279 218 20 82 chr13 42473576 42473705 -59399464 + MLT1A2 LTR MaLR 231 366 -8 265 350 36 36 chr13 42473722 42473862 -59399307 - L2 LINE L2 -846 2468 2329 1119 276 107 40 chr13 42474248 42474791 -59398378 - MLT1K LTR MaLR -8 580 2 26 30 0 0 chr13 42475593 42475626 -59397543 + AT_rich Low_complexity Low_complexity 1 33 0 346 313 0 0 chr13 42475805 42475904 -59397265 + L2 LINE L2 3215 3313 0 225 0 0 0 chr13 42476520 42476545 -59396624 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr13 42476878 42476900 -59396269 + AT_rich Low_complexity Low_complexity 1 22 0 243 337 10 20 chr13 42478832 42478930 -59394239 + MIR3 SINE MIR 58 154 -54 1937 93 10 58 chr13 42478936 42479247 -59393922 - AluSg SINE Alu -14 296 1 705 266 35 46 chr13 42479313 42479345 -59393824 + MIR SINE MIR 7 38 -224 1345 184 71 4 chr13 42479345 42479645 -59393524 - AluJb SINE Alu 0 318 1 705 266 35 46 chr13 42479645 42479870 -59393299 + MIR SINE MIR 38 262 0 211 246 53 0 chr13 42479891 42479948 -59393221 - L3b LINE CR1 -194 1389 1330 204 195 24 49 chr13 42480587 42480669 -59392500 + (CATATA)n Simple_repeat Simple_repeat 5 84 0 2244 118 0 6 chr13 42480843 42481157 -59392012 + AluSx SINE Alu 1 312 0 292 305 107 23 chr13 42481684 42481861 -59391308 + MIR3 SINE MIR 10 201 -7 270 224 13 40 chr13 42483822 42483898 -59389271 - MIR3 SINE MIR -5 203 130 1485 169 28 0 chr13 42484707 42484997 -59388172 - L1MA8 LINE L1 0 6291 5994 16577 95 10 4 chr13 42485802 42489028 -59384141 - L1PA7 LINE L1 0 6154 2914 219 139 0 0 chr13 42490478 42490514 -59382655 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr13 42490536 42490564 -59382605 + AT_rich Low_complexity Low_complexity 1 28 0 228 284 0 62 chr13 42491781 42491862 -59381307 + L2 LINE L2 3237 3312 -1 225 94 0 0 chr13 42492257 42492289 -59380880 + (TC)n Simple_repeat Simple_repeat 1 32 0 243 0 0 0 chr13 42492309 42492336 -59380833 + (TG)n Simple_repeat Simple_repeat 2 28 0 350 204 0 0 chr13 42492337 42492391 -59380778 - AluJ/FRAM SINE Alu -21 281 228 1834 170 118 18 chr13 42492432 42492821 -59380348 + MSTA LTR MaLR 1 428 0 202 269 75 119 chr13 42493175 42493309 -59379860 - L2 LINE L2 -211 3061 2934 2165 180 13 40 chr13 42494018 42494491 -59378678 - L1MB7 LINE L1 0 6184 5725 2145 111 0 3 chr13 42494671 42494991 -59378178 - AluSg SINE Alu 0 310 1 321 297 77 28 chr13 42495275 42495457 -59377712 + L2 LINE L2 1905 2095 -1219 3382 86 9 57 chr13 42495521 42496045 -59377124 - MER41A LTR ERV1 0 554 56 184 373 20 0 chr13 42496052 42496154 -59377015 + L2 LINE L2 2164 2267 -1047 849 246 69 20 chr13 42496195 42496304 -59376865 - LTR40a LTR ERVL -2 517 415 1510 192 69 0 chr13 42496304 42496621 -59376548 - MER44D DNA MER2_type 0 609 1 849 246 69 20 chr13 42496621 42496827 -59376342 - LTR40a LTR ERVL -104 415 139 21 0 0 0 chr13 42499331 42499352 -59373817 + AT_rich Low_complexity Low_complexity 1 21 0 225 319 106 18 chr13 42500405 42500518 -59372651 - L2 LINE L2 -5 3308 3186 1477 76 0 0 chr13 42501312 42501509 -59371660 - L1PA5 LINE L1 -109 6045 5849 276 253 23 11 chr13 42501777 42501864 -59371305 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 195 146 0 0 chr13 42502457 42502498 -59370671 + (TTG)n Simple_repeat Simple_repeat 2 42 0 252 246 18 0 chr13 42503211 42503268 -59369901 + MIR3 SINE MIR 146 203 -5 411 73 0 0 chr13 42503393 42503448 -59369721 + (CA)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr13 42503530 42503552 -59369617 + AT_rich Low_complexity Low_complexity 1 22 0 564 289 52 24 chr13 42503560 42503771 -59369398 - MIR SINE MIR -10 252 36 1841 145 8 33 chr13 42503794 42504401 -59368768 - LTR8 LTR ERV1 0 691 1 1692 253 48 33 chr13 42504832 42505315 -59367854 - MLT1E LTR MaLR 0 593 104 346 141 14 0 chr13 42505326 42505385 -59367784 + MER34C LTR ERV1 12 99 -465 8914 101 71 43 chr13 42505659 42506042 -59367127 - L1P3 LINE L1 -3521 2940 2569 2488 80 0 0 chr13 42506042 42506353 -59366816 - AluY SINE Alu 0 311 1 8914 101 71 43 chr13 42506353 42508077 -59365092 - L1P3 LINE L1 -3892 2569 686 1073 178 6 0 chr13 42508098 42508272 -59364897 - AluJb SINE Alu -24 288 114 314 291 34 63 chr13 42508983 42509189 -59363980 - L2 LINE L2 0 3313 3114 279 0 0 0 chr13 42509433 42509464 -59363705 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 312 55 34 chr13 42509668 42509960 -59363209 - L1M4 LINE L1 -1566 4580 4283 25 31 0 0 chr13 42510304 42510336 -59362833 + AT_rich Low_complexity Low_complexity 1 32 0 32 67 0 0 chr13 42510433 42510493 -59362676 + AT_rich Low_complexity Low_complexity 1 60 0 634 201 16 46 chr13 42511837 42512031 -59361138 - MER53 DNA DNA 0 189 2 230 265 132 0 chr13 42513092 42513160 -59360009 + L2 LINE L2 3142 3218 -54 822 89 12 0 chr13 42513160 42513329 -59359840 + LTR12 LTR ERV1 1 285 -429 270 264 0 0 chr13 42513330 42513402 -59359767 + LTR30 LTR ERV1 553 624 -98 1793 86 18 0 chr13 42513404 42513651 -59359518 + LTR12 LTR ERV1 51 714 0 192 121 0 0 chr13 42513662 42513695 -59359474 + L2 LINE L2 3280 3312 -1 22 21 0 62 chr13 42513992 42514040 -59359129 + AT_rich Low_complexity Low_complexity 1 45 0 1999 138 26 32 chr13 42514719 42515096 -59358073 + THE1C LTR MaLR 1 375 0 264 299 19 9 chr13 42515946 42516053 -59357116 + L1ME LINE L1 5732 5839 -282 21 36 0 0 chr13 42516082 42516110 -59357059 + AT_rich Low_complexity Low_complexity 1 28 0 780 251 15 20 chr13 42516179 42516382 -59356787 - MIR SINE MIR -15 247 46 222 271 0 0 chr13 42518182 42518241 -59354928 + (CA)n Simple_repeat Simple_repeat 2 60 0 34 0 0 0 chr13 42520271 42520305 -59352864 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr13 42520976 42520998 -59352171 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 42521191 42521213 -59351956 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2035 118 11 3 chr13 42521220 42521507 -59351662 - AluSq SINE Alu -24 289 1 249 217 87 29 chr13 42521776 42521914 -59351255 + L1ME LINE L1 5255 5400 -2408 1280 184 7 149 chr13 42521914 42522232 -59350937 + MLT1A2 LTR MaLR 1 242 -132 1889 173 3 10 chr13 42522232 42522545 -59350624 + AluJb SINE Alu 2 312 0 1280 184 7 149 chr13 42522545 42522662 -59350507 + MLT1A2 LTR MaLR 242 374 0 2206 216 32 48 chr13 42522716 42523432 -59349737 + MER21B LTR ERV1 98 852 -11 307 308 91 35 chr13 42523691 42523834 -59349335 + L1ME LINE L1 5523 5673 -448 336 264 24 24 chr13 42525110 42525235 -59347934 + HAL1b LINE L1 225 349 -999 473 329 107 24 chr13 42525251 42525683 -59347486 + L1M4 LINE L1 3423 3888 -2258 180 0 0 0 chr13 42526508 42526528 -59346641 + (T)n Simple_repeat Simple_repeat 1 20 0 2037 103 3 13 chr13 42527194 42527494 -59345675 - AluSc SINE Alu -10 299 3 203 167 0 0 chr13 42527502 42527538 -59345631 + T-rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr13 42527977 42528003 -59345166 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr13 42528503 42528532 -59344637 + AT_rich Low_complexity Low_complexity 1 29 0 22482 31 0 0 chr13 42528532 42529035 -59344134 - L1PA2 LINE L1 -2 6153 5652 227 77 0 26 chr13 42529035 42529074 -59344095 + (TA)n Simple_repeat Simple_repeat 1 38 0 22482 31 0 0 chr13 42529074 42532080 -59341089 - L1PA2 LINE L1 -503 5652 2661 1459 121 152 8 chr13 42632080 42632337 -59240832 - AluSq SINE Alu -9 294 1 843 275 43 102 chr13 42632352 42632843 -59240326 + MLT1F1 LTR MaLR 72 533 -34 230 132 44 15 chr13 42633098 42633166 -59240003 + (TA)n Simple_repeat Simple_repeat 2 71 0 1502 293 70 37 chr13 42633264 42633828 -59239341 + HAL1 LINE L1 1106 1705 -802 1365 250 43 3 chr13 42633828 42634156 -59239013 - MER58B DNA MER1_type 0 341 1 1502 293 70 37 chr13 42634156 42634374 -59238795 + HAL1 LINE L1 1705 1914 -593 200 182 45 0 chr13 42634497 42634541 -59238628 + A-rich Low_complexity Low_complexity 5 50 0 354 191 59 0 chr13 42634649 42634717 -59238452 - Tigger5 DNA MER2_type -5 2318 2247 * 430 203 0 13 chr13 42634712 42634791 -59238378 + Tigger5 DNA MER2_type 2242 2319 -4 343 182 15 15 chr13 42634792 42634858 -59238311 - Tigger5 DNA MER2_type -2245 78 13 408 256 64 30 chr13 42634885 42635088 -59238081 + HAL1 LINE L1 2036 2245 -262 306 273 27 9 chr13 42635095 42635205 -59237964 + HAL1 LINE L1 2285 2396 -111 694 303 73 38 chr13 42635514 42635857 -59237312 + L2 LINE L2 2941 3295 -18 313 309 264 0 chr13 42636630 42636808 -59236361 + L1ME4a LINE L1 5355 5579 -542 22 0 0 0 chr13 42636882 42636904 -59236265 + AT_rich Low_complexity Low_complexity 1 22 0 1683 175 3 18 chr13 42636964 42637274 -59235895 + AluJo SINE Alu 1 306 0 296 250 45 9 chr13 42637281 42637393 -59235776 + L1ME4a LINE L1 5765 5880 -241 539 304 98 10 chr13 42638419 42638613 -59234556 - MIR SINE MIR -16 246 36 2210 138 39 14 chr13 42639026 42639381 -59233788 - THE1B LTR MaLR 0 364 1 11577 100 4 2 chr13 42639381 42640958 -59232211 - THE1B-int LTR MaLR 0 1580 1 1408 143 45 22 chr13 42640960 42641183 -59231986 - THE1B LTR MaLR -12 352 125 4460 180 76 10 chr13 42643359 42644116 -59229053 + L1MA4 LINE L1 5101 5968 -332 267 54 0 0 chr13 42644116 42644153 -59229016 + (CA)n Simple_repeat Simple_repeat 2 38 0 4460 180 76 10 chr13 42644153 42644486 -59228683 + L1MA4 LINE L1 5968 6277 -23 979 272 87 54 chr13 42645000 42645540 -59227629 + MLT2E LTR ERVL 6 626 -2 2076 105 27 17 chr13 42645769 42646065 -59227104 + AluSx SINE Alu 2 300 -12 1342 223 69 25 chr13 42646566 42646929 -59226240 - MLT1B LTR MaLR -11 379 1 4802 182 14 1 chr13 42648603 42649584 -59223585 - L1PB4 LINE L1 -1 6155 5162 836 210 54 73 chr13 42649587 42649901 -59223268 + L1PB4 LINE L1 4852 5159 -987 797 280 60 27 chr13 42650636 42650934 -59222235 + L1MCa LINE L1 572 848 -5197 450 218 78 53 chr13 42650930 42651173 -59221996 + L1MCa LINE L1 1300 1548 -5016 * 940 297 16 16 chr13 42651186 42651621 -59221548 + L1M4 LINE L1 3197 3631 -2515 646 216 7 0 chr13 42651625 42651773 -59221396 + L1M4 LINE L1 4798 4946 -1200 9284 148 26 37 chr13 42651809 42653049 -59220120 - Tigger1 DNA MER2_type 0 2418 1202 1946 162 0 0 chr13 42653049 42653351 -59219818 + AluSq SINE Alu 1 302 -11 9284 148 26 37 chr13 42653351 42653822 -59219347 - Tigger1 DNA MER2_type -1216 1202 727 222 62 0 0 chr13 42653836 42653868 -59219301 + (TTA)n Simple_repeat Simple_repeat 3 34 0 17878 30 3 1 chr13 42653868 42656776 -59216393 - L1PA3 LINE L1 -18 6137 3226 4654 23 2 2 chr13 42656776 42657346 -59215823 + L1PA3 LINE L1 2649 3218 -2928 3066 159 25 0 chr13 42657358 42657886 -59215283 - Tigger1 DNA MER2_type -1693 725 185 4542 314 111 39 chr13 42658178 42658656 -59214513 - L2 LINE L2 -1 3312 2870 351 0 0 0 chr13 42658656 42658695 -59214474 + (TA)n Simple_repeat Simple_repeat 1 39 0 4542 314 111 39 chr13 42658695 42659726 -59213443 - L2 LINE L2 -443 2870 1915 2237 68 21 4 chr13 42659726 42660006 -59213163 - AluY SINE Alu -26 285 1 4542 314 111 39 chr13 42660006 42660239 -59212930 - L2 LINE L2 -1398 1915 1700 249 33 0 0 chr13 42660239 42660269 -59212900 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 4542 314 111 39 chr13 42660269 42661574 -59211595 - L2 LINE L2 -1613 1700 36 28 48 0 0 chr13 42663218 42663260 -59209909 + AT_rich Low_complexity Low_complexity 1 42 0 232 233 178 14 chr13 42663723 42663796 -59209373 - MIR SINE MIR -10 252 168 355 278 35 9 chr13 42664342 42664457 -59208712 + MLT1J1 LTR MaLR 2 119 -327 2191 306 233 6 chr13 42665024 42666205 -59206964 - L2 LINE L2 -1341 1973 525 2721 146 20 2 chr13 42666206 42666665 -59206504 + L1P LINE L1 3856 4322 -1824 505 193 46 0 chr13 42666673 42666782 -59206387 - MLT1C LTR MaLR -353 114 1 590 201 97 8 chr13 42666825 42666959 -59206210 - MLT1C LTR MaLR -316 151 6 1585 112 0 0 chr13 42667151 42667365 -59205804 + AluSx SINE Alu 1 214 -98 907 281 97 32 chr13 42667547 42667917 -59205252 - L1MCb LINE L1 -5596 449 56 234 324 159 6 chr13 42668457 42668627 -59204542 + MIR SINE MIR 67 262 0 218 317 24 37 chr13 42670138 42670220 -59202949 + MIR SINE MIR 51 131 -131 267 315 60 27 chr13 42670402 42670551 -59202618 + MIR SINE MIR 36 189 -73 262 385 50 0 chr13 42671567 42671728 -59201441 + L2 LINE L2 1261 1429 -1885 6457 25 0 1 chr13 42672427 42673181 -59199988 + L1PA3 LINE L1 5403 6155 0 414 353 32 11 chr13 42676164 42676354 -59196815 + MIR SINE MIR 43 236 -26 222 246 43 14 chr13 42676426 42676495 -59196674 - MIR SINE MIR -74 188 118 200 371 56 11 chr13 42676626 42676715 -59196454 + L2 LINE L2 3137 3229 -43 21 89 0 0 chr13 42677619 42677675 -59195494 + AT_rich Low_complexity Low_complexity 1 56 0 893 266 118 45 chr13 42677987 42678307 -59194862 + L1ME3A LINE L1 5520 5815 -355 1557 192 89 9 chr13 42678307 42678645 -59194524 - MLT1A1 LTR MaLR 0 365 1 893 266 118 45 chr13 42678645 42678919 -59194250 + L1ME3A LINE L1 5815 6158 -12 555 266 46 110 chr13 42679100 42679601 -59193568 - MLT1J LTR MaLR -1 510 42 29 0 0 0 chr13 42679808 42679837 -59193332 + AT_rich Low_complexity Low_complexity 1 29 0 214 386 94 0 chr13 42680217 42680344 -59192825 + L2 LINE L2 3134 3272 0 337 297 107 30 chr13 42680454 42680761 -59192408 + MLT1J2 LTR MaLR 94 386 -23 741 233 70 51 chr13 42681121 42681336 -59191833 - MER20 DNA MER1_type 0 219 1 33 25 0 0 chr13 42682070 42682110 -59191059 + AT_rich Low_complexity Low_complexity 1 40 0 203 235 39 0 chr13 42682736 42682787 -59190382 + L2 LINE L2 3256 3308 -5 2010 135 39 33 chr13 42684694 42685056 -59188113 - THE1B LTR MaLR 0 364 1 11207 113 1 1 chr13 42685056 42686634 -59186535 - THE1B-int LTR MaLR 0 1580 2 1517 147 52 130 chr13 42686635 42687042 -59186127 - THE1C LTR MaLR 0 375 1 234 346 12 0 chr13 42687462 42687543 -59185626 - L2 LINE L2 0 3313 3232 261 0 0 0 chr13 42688456 42688485 -59184684 + (TTG)n Simple_repeat Simple_repeat 2 30 0 255 333 122 8 chr13 42689023 42689146 -59184023 + MIR SINE MIR 11 147 -115 25 75 0 0 chr13 42689558 42689611 -59183558 + AT_rich Low_complexity Low_complexity 1 53 0 245 87 0 22 chr13 42689626 42689672 -59183497 + (TA)n Simple_repeat Simple_repeat 1 45 0 180 0 0 0 chr13 42691028 42691048 -59182121 + (T)n Simple_repeat Simple_repeat 1 20 0 496 192 0 115 chr13 42692437 42692567 -59180602 - L2 LINE L2 -6 3307 3193 32 57 0 0 chr13 42692577 42692630 -59180539 + AT_rich Low_complexity Low_complexity 1 53 0 4552 138 11 15 chr13 42692637 42693390 -59179779 + L1PA15 LINE L1 5413 6162 -3 550 319 112 28 chr13 42693716 42694481 -59178688 - HAL1 LINE L1 -800 1707 878 230 194 28 28 chr13 42695395 42695467 -59177702 + (TA)n Simple_repeat Simple_repeat 1 72 0 1793 113 0 33 chr13 42696003 42696277 -59176892 + AluSq SINE Alu 1 265 -48 519 263 32 0 chr13 42696569 42696755 -59176414 + L1ME LINE L1 5258 5449 -713 * 6034 113 2 0 chr13 42696753 42697627 -59175542 - L1P LINE L1 -1378 4768 3893 1394 143 0 0 chr13 42697624 42697854 -59175315 - L1P LINE L1 -1705 4441 4212 * 2632 178 22 20 chr13 42697922 42698423 -59174746 - MER67C LTR ERV1 -208 502 1 5295 198 50 8 chr13 42698615 42699805 -59173364 - L1 LINE L1 -911 5235 3995 2586 117 31 8 chr13 42699806 42700198 -59172971 - LTR9 LTR ERV1 0 612 212 581 308 181 23 chr13 42700826 42701258 -59171911 - L2 LINE L2 -5 3308 2809 345 299 45 140 chr13 42701370 42701583 -59171586 - L2 LINE L2 -512 2802 2570 2089 127 3 0 chr13 42701583 42701891 -59171278 + AluSg SINE Alu 1 309 -1 345 299 45 140 chr13 42701891 42702224 -59170945 - L2 LINE L2 -744 2570 2310 3443 118 31 6 chr13 42702224 42702550 -59170619 + MER41C LTR ERV1 1 348 -206 189 0 0 0 chr13 42702550 42702571 -59170598 + (TA)n Simple_repeat Simple_repeat 1 21 0 3443 118 31 6 chr13 42702571 42702784 -59170385 + MER41C LTR ERV1 348 554 0 345 299 45 140 chr13 42702784 42702807 -59170362 - L2 LINE L2 -1004 2310 2286 3837 88 24 0 chr13 42703894 42704429 -59168740 - MER41A LTR ERV1 -6 548 1 332 326 28 7 chr13 42705259 42705403 -59167766 - MER69 DNA AcHobo -2379 147 1 2178 112 0 3 chr13 42705657 42705952 -59167217 + AluSg SINE Alu 1 294 -16 4193 196 6 7 chr13 42706044 42706994 -59166175 - L1MA9 LINE L1 -14 6298 5254 230 162 0 0 chr13 42706992 42707029 -59166140 + L1 LINE L1 3952 3988 -2158 * 530 81 0 0 chr13 42707038 42707112 -59166057 + LTR9 LTR ERV1 1 74 -538 5109 187 36 10 chr13 42708027 42709562 -59163607 - L1MA8 LINE L1 -3 6288 4725 2680 141 95 8 chr13 42709742 42710225 -59162944 + L1PA16 LINE L1 5635 6159 -7 2228 90 0 20 chr13 42710271 42710570 -59162599 + AluY SINE Alu 2 294 -17 295 351 43 22 chr13 42710860 42711045 -59162124 - ERVL LTR ERVL -1215 4549 4361 271 332 116 42 chr13 42711206 42711516 -59161653 - ERVL LTR ERVL -2541 3223 2891 4830 151 65 53 chr13 42711647 42711733 -59161436 - pTR5 LTR ERV1 0 2438 2354 1981 94 38 7 chr13 42711733 42712021 -59161148 + AluY SINE Alu 1 297 -14 4830 151 65 53 chr13 42712021 42713324 -59159845 - pTR5 LTR ERV1 -84 2354 742 926 331 82 59 chr13 42713327 42714415 -59158754 - ERVL LTR ERVL -3030 2734 1622 270 56 0 0 chr13 42714750 42714786 -59158383 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 181 147 35 chr13 42714830 42714946 -59158223 - MER5B DNA MER1_type -35 143 15 499 301 146 48 chr13 42716727 42717139 -59156030 - ERVL LTR ERVL -1303 4461 4010 371 138 35 0 chr13 42717146 42717204 -59155965 - AluJ/FLAM SINE Alu -229 73 14 817 100 0 0 chr13 42717257 42717367 -59155802 + AluJb SINE Alu 24 133 -179 2208 113 3 0 chr13 42717577 42717887 -59155282 + AluSq SINE Alu 3 313 0 303 323 20 0 chr13 42717890 42717989 -59155180 - ERVL LTR ERVL -2020 3744 3644 3003 220 137 22 chr13 42718351 42719470 -59153699 - L1MDa LINE L1 -4269 2271 1025 180 111 0 0 chr13 42719602 42719629 -59153540 + (TA)n Simple_repeat Simple_repeat 1 27 0 353 219 34 0 chr13 42719677 42719796 -59153373 + (TA)n Simple_repeat Simple_repeat 2 124 0 303 186 14 0 chr13 42719796 42719866 -59153303 - L1MB3 LINE L1 -28 6155 6085 * 2796 299 71 16 chr13 42719865 42720832 -59152337 - L1MDa LINE L1 -5502 1038 19 415 314 25 38 chr13 42720975 42721134 -59152035 - MIR SINE MIR -105 157 1 22 0 0 0 chr13 42721986 42722008 -59151161 + AT_rich Low_complexity Low_complexity 1 22 0 312 295 26 0 chr13 42722032 42722188 -59150981 + (TA)n Simple_repeat Simple_repeat 2 161 0 204 158 0 0 chr13 42722222 42722260 -59150909 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 208 156 0 78 chr13 42722313 42722377 -59150792 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 22 0 0 0 chr13 42724327 42724349 -59148820 + AT_rich Low_complexity Low_complexity 1 22 0 183 325 0 100 chr13 42724375 42724495 -59148674 - L2 LINE L2 -47 3266 3159 691 225 0 0 chr13 42725627 42725756 -59147413 - MER94 DNA DNA 0 134 6 203 204 19 0 chr13 42725852 42725906 -59147263 + (TA)n Simple_repeat Simple_repeat 1 55 0 28 29 0 0 chr13 42726962 42726997 -59146172 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr13 42727021 42727049 -59146120 + AT_rich Low_complexity Low_complexity 1 28 0 615 226 22 0 chr13 42727605 42727742 -59145427 + LTR8A LTR ERV1 1 140 -587 6996 20 0 1 chr13 42727742 42728575 -59144594 - L1PA4 LINE L1 -940 5206 4375 7577 27 0 0 chr13 42728575 42729523 -59143646 + L1PA4 LINE L1 5205 6152 -3 1094 174 0 15 chr13 42729541 42729737 -59143432 + LTR8 LTR ERV1 117 309 -382 2094 163 24 21 chr13 42729784 42730165 -59143004 + LTR8 LTR ERV1 310 691 0 2313 172 64 9 chr13 42730256 42730693 -59142476 - LOR1b LTR ERV1 0 461 1 229 338 79 44 chr13 42731025 42731253 -59141916 - MIR SINE MIR 0 262 27 23 0 0 0 chr13 42732035 42732058 -59141111 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr13 42732522 42732547 -59140622 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr13 42733435 42733476 -59139693 + AT_rich Low_complexity Low_complexity 1 41 0 244 294 8 17 chr13 42733820 42733939 -59139230 + (TA)n Simple_repeat Simple_repeat 2 119 0 1565 181 122 20 chr13 42733939 42734445 -59138724 + MLT2A2 LTR ERVL 1 554 0 268 229 18 11 chr13 42734446 42734726 -59138443 + (TA)n Simple_repeat Simple_repeat 1 282 0 50 14 0 28 chr13 42734726 42734774 -59138395 + AT_rich Low_complexity Low_complexity 1 48 -22 1986 149 0 0 chr13 42734774 42735063 -59138106 + AluSx SINE Alu 1 289 -23 50 14 0 28 chr13 42735063 42735086 -59138083 + AT_rich Low_complexity Low_complexity 48 70 0 308 262 24 12 chr13 42735086 42735250 -59137919 + (TTATA)n Simple_repeat Simple_repeat 5 170 0 * 350 202 45 34 chr13 42735249 42735427 -59137742 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 307 240 41 12 chr13 42735392 42735563 -59137606 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 * 298 227 36 9 chr13 42735538 42735648 -59137521 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 22 70 0 0 chr13 42736214 42736257 -59136912 + AT_rich Low_complexity Low_complexity 1 43 0 297 0 0 0 chr13 42736722 42736755 -59136414 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 1418 172 44 7 chr13 42736771 42736935 -59136234 - AluSx SINE Alu -3 309 128 1009 13 57 6 chr13 42736935 42737093 -59136076 + (TTTTA)n Simple_repeat Simple_repeat 2 167 0 1418 172 44 7 chr13 42737093 42737224 -59135945 - AluSx SINE Alu -184 128 3 463 291 96 59 chr13 42737302 42737790 -59135379 + L1ME LINE L1 5317 5822 -348 678 162 0 0 chr13 42737896 42738001 -59135168 - Tigger1 DNA MER2_type -1 2417 2313 4086 177 20 8 chr13 42738033 42738917 -59134252 - L1MC1 LINE L1 -293 6040 5149 500 278 28 17 chr13 42739036 42739212 -59133957 - L1ME LINE L1 -381 5789 5612 480 234 170 32 chr13 42739311 42739537 -59133632 - MER31B LTR ERV1 -244 241 15 246 290 96 52 chr13 42739547 42739871 -59133298 - L1ME LINE L1 -579 5591 5254 495 137 14 0 chr13 42739917 42739990 -59133179 - MER2 DNA MER2_type -270 75 2 21 71 0 0 chr13 42740567 42740609 -59132560 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr13 42743343 42743371 -59129798 + AT_rich Low_complexity Low_complexity 1 28 0 817 213 6 6 chr13 42743811 42743975 -59129194 + FRAM SINE Alu 1 164 -12 312 322 49 7 chr13 42744239 42744382 -59128787 - MIR SINE MIR -14 248 100 23 0 0 0 chr13 42744947 42744970 -59128199 + AT_rich Low_complexity Low_complexity 1 23 0 526 281 152 0 chr13 42746022 42746186 -59126983 - MIR3 SINE MIR -1 207 19 2358 98 0 0 chr13 42746450 42746755 -59126414 + AluSx SINE Alu 1 305 -7 309 282 10 19 chr13 42747459 42747562 -59125607 - L1ME LINE L1 -1550 4596 4495 351 239 0 0 chr13 42747591 42747679 -59125490 + (TA)n Simple_repeat Simple_repeat 1 88 0 691 250 22 9 chr13 42747679 42747903 -59125266 - L1ME LINE L1 -1704 4442 4216 22 35 0 0 chr13 42748065 42748094 -59125075 + AT_rich Low_complexity Low_complexity 1 29 0 318 50 0 0 chr13 42748423 42748463 -59124706 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 0 0 0 chr13 42748464 42748484 -59124685 + (GA)n Simple_repeat Simple_repeat 1 20 0 600 340 68 0 chr13 42748718 42748953 -59124216 + MIR SINE MIR 8 258 -4 458 264 138 13 chr13 42749455 42749614 -59123555 - MER5A DNA MER1_type 0 189 11 21 0 0 0 chr13 42750320 42750341 -59122828 + AT_rich Low_complexity Low_complexity 1 21 0 2463 216 49 13 chr13 42750475 42751087 -59122082 - L1MD3 LINE L1 -9 7986 7353 321 136 25 25 chr13 42751185 42751266 -59121903 + CT-rich Low_complexity Low_complexity 4 84 0 321 296 32 17 chr13 42751582 42751764 -59121405 - L1MCc LINE L1 -5889 533 8 378 91 0 0 chr13 42752830 42752885 -59120284 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr13 42753955 42753976 -59119193 + AT_rich Low_complexity Low_complexity 1 21 0 2134 76 44 0 chr13 42755832 42756107 -59117062 + AluY SINE Alu 1 287 -24 1483 205 90 116 chr13 42756275 42756960 -59116209 + LTR28 LTR ERV1 105 966 -54 460 236 8 55 chr13 42757015 42757142 -59116027 + LTR28 LTR ERV1 900 1020 0 1461 215 0 27 chr13 42758503 42758801 -59114368 + AluJb SINE Alu 6 295 -17 27 29 0 0 chr13 42759171 42759205 -59113964 + AT_rich Low_complexity Low_complexity 1 34 0 227 230 8 79 chr13 42759777 42759903 -59113266 + L1M4 LINE L1 5127 5243 -903 633 239 0 22 chr13 42759911 42760064 -59113105 + FLAM_A SINE Alu 1 133 0 374 113 0 14 chr13 42760087 42760158 -59113011 + (TTCC)n Simple_repeat Simple_repeat 4 73 0 1539 164 6 61 chr13 42760805 42761117 -59112052 + AluJb SINE Alu 7 301 -11 29 75 0 21 chr13 42761240 42761311 -59111858 + AT_rich Low_complexity Low_complexity 1 71 -20 1888 201 45 2 chr13 42761311 42761714 -59111455 - L1MA6 LINE L1 0 6300 5881 29 75 0 21 chr13 42761714 42761735 -59111434 + AT_rich Low_complexity Low_complexity 71 91 0 190 343 108 20 chr13 42762672 42762774 -59110395 - L2 LINE L2 -199 3073 2963 2087 123 19 13 chr13 42765725 42766035 -59107134 + AluSx SINE Alu 1 312 0 233 380 0 0 chr13 42766293 42766364 -59106805 - L3 LINE CR1 -477 1100 1030 296 329 113 9 chr13 42766380 42766428 -59106741 - MIR SINE MIR -15 247 205 577 281 108 16 chr13 42766428 42766734 -59106435 + MER46C DNA MER2_type 5 338 0 296 329 113 9 chr13 42766734 42766780 -59106389 - MIR SINE MIR -57 205 165 2286 111 13 49 chr13 42766780 42767167 -59106002 - THE1C LTR MaLR -2 373 1 296 329 113 9 chr13 42767167 42767284 -59105885 - MIR SINE MIR -97 165 13 2080 52 8 0 chr13 42767560 42767827 -59105342 - L1PA7 LINE L1 0 6154 5886 230 336 26 35 chr13 42768549 42768665 -59104504 - L2 LINE L2 0 3313 3199 540 256 0 28 chr13 42768984 42769160 -59104009 - L1MEc LINE L1 -3647 2568 2398 3914 220 21 21 chr13 42769176 42773086 -59100083 - L1PB4 LINE L1 -3 7591 3487 703 310 57 63 chr13 42773118 42773644 -59099525 - L1PB4 LINE L1 -6421 1164 11 1263 282 101 42 chr13 42773660 42775173 -59097996 - L1MEc LINE L1 -3965 2431 829 33 0 0 0 chr13 42775306 42775339 -59097830 + AT_rich Low_complexity Low_complexity 1 33 0 336 270 157 22 chr13 42775717 42775902 -59097267 - L1MEc LINE L1 -5859 346 137 25 31 0 0 chr13 42776196 42776228 -59096941 + AT_rich Low_complexity Low_complexity 1 32 0 219 263 0 0 chr13 42777405 42777462 -59095707 + T-rich Low_complexity Low_complexity 1 57 0 2146 108 0 3 chr13 42778284 42778580 -59094589 - AluSg SINE Alu -15 295 1 30 93 0 0 chr13 42778721 42778807 -59094362 + AT_rich Low_complexity Low_complexity 1 86 0 253 368 63 0 chr13 42778844 42778939 -59094230 + L2 LINE L2 2897 2997 -316 1790 229 11 42 chr13 42779276 42779753 -59093416 + MLT1D LTR MaLR 42 503 -2 615 263 108 80 chr13 42779863 42780390 -59092779 - L1ME LINE L1 -351 5811 5268 326 261 171 25 chr13 42780402 42780601 -59092568 - L1ME LINE L1 -913 5233 5006 733 245 68 32 chr13 42780651 42780900 -59092269 - L1MA4 LINE L1 -6 6294 6037 406 269 178 11 chr13 42781068 42781332 -59091837 - L1ME LINE L1 -1346 4800 4493 354 284 81 56 chr13 42781761 42782046 -59091123 + MLT1I LTR MaLR 116 407 -2 576 113 0 0 chr13 42782507 42782587 -59090582 + MADE1 DNA Mariner 1 80 0 504 217 116 92 chr13 42883834 42884041 -58989128 + L2 LINE L2 3094 3305 -8 1093 208 200 31 chr13 42884044 42884437 -58988732 + LTR50 LTR ERVL 9 334 -461 1127 132 65 115 chr13 42884437 42884777 -58988392 - MER33 DNA MER1_type -1 323 1 1093 208 200 31 chr13 42884777 42884977 -58988192 + LTR50 LTR ERVL 334 794 -1 188 117 0 67 chr13 42887240 42887272 -58985897 + (A)n Simple_repeat Simple_repeat 1 29 -27 1931 62 0 0 chr13 42887272 42887513 -58985656 + AluY SINE Alu 1 241 -70 188 117 0 67 chr13 42887513 42887540 -58985629 + (A)n Simple_repeat Simple_repeat 29 56 0 242 246 18 0 chr13 42889133 42889190 -58983979 - L2 LINE L2 -4 3268 3211 2525 83 3 0 chr13 42889409 42889757 -58983412 + L1PA13 LINE L1 5814 6162 -1 3043 149 19 2 chr13 42889757 42890282 -58982887 + L1 LINE L1 4406 4939 -1207 25 31 0 0 chr13 42891260 42891292 -58981877 + AT_rich Low_complexity Low_complexity 1 32 0 527 209 31 118 chr13 42891643 42891897 -58981272 - L1MC4 LINE L1 -1 8041 7810 605 220 254 48 chr13 42891976 42892244 -58980925 - MER5C DNA MER1_type 0 324 2 1824 274 71 40 chr13 42892320 42893218 -58979951 - L1MC4 LINE L1 -408 7634 6644 1424 267 31 29 chr13 42894254 42894848 -58978321 + L1MCa LINE L1 4 484 -5561 2934 239 101 14 chr13 42894901 42895900 -58977269 + L1M4 LINE L1 3118 4203 -1943 1963 214 49 26 chr13 42895900 42896658 -58976511 - L1ME LINE L1 -539 5627 4853 231 203 0 0 chr13 42896860 42896924 -58976245 + A-rich Low_complexity Low_complexity 1 64 0 219 190 0 0 chr13 42896983 42897041 -58976128 + A-rich Low_complexity Low_complexity 1 58 0 219 263 0 0 chr13 42897073 42897130 -58976039 + A-rich Low_complexity Low_complexity 1 57 0 2476 213 35 20 chr13 42897157 42897753 -58975416 + L1MD2 LINE L1 5725 6329 -30 180 309 0 18 chr13 42897867 42897922 -58975247 + MIR SINE MIR 196 249 -13 629 263 90 64 chr13 42897981 42898338 -58974831 + L2 LINE L2 2936 3301 -12 1846 160 39 21 chr13 42899449 42899780 -58973389 + MER1B DNA MER1_type 1 337 0 2972 198 30 27 chr13 42899868 42900529 -58972640 - LTR8A LTR ERV1 0 727 65 * 3087 198 65 12 chr13 42900524 42901216 -58971953 - MER50 LTR ERV1 -5 729 1 503 123 0 12 chr13 42901216 42901295 -58971874 - LTR8A LTR ERV1 -649 78 1 621 242 31 31 chr13 42901761 42901922 -58971247 + MER45A DNA AcHobo 18 178 0 2756 7 0 0 chr13 42902055 42902356 -58970813 + AluYa5 SINE Alu 1 301 -10 2122 121 0 3 chr13 42902570 42902860 -58970309 + AluSx SINE Alu 1 289 -23 370 339 71 52 chr13 42902996 42903696 -58969473 + HAL1b LINE L1 517 1125 -641 2770 155 54 29 chr13 42904071 42904702 -58968467 + LTR48B LTR ERV1 1 704 -3 301 295 48 17 chr13 42905464 42905691 -58967478 + L1M4 LINE L1 3804 4047 -2099 2229 121 3 0 chr13 42906244 42906550 -58966619 + AluSq SINE Alu 2 308 -5 3725 150 16 0 chr13 42906606 42907220 -58965949 + MER41B LTR ERV1 4 627 -8 1736 154 7 4 chr13 42907414 42907693 -58965476 + AluJb SINE Alu 1 280 -32 26 30 0 0 chr13 42907844 42907877 -58965292 + AT_rich Low_complexity Low_complexity 1 33 0 278 299 47 0 chr13 42908620 42908747 -58964422 + L1ME LINE L1 5734 5866 -255 2962 97 41 47 chr13 42908864 42909484 -58963685 - MER4B LTR ERV1 0 779 15 2050 131 26 7 chr13 42909484 42909790 -58963379 - AluSx SINE Alu 0 312 1 2962 97 41 47 chr13 42909790 42909805 -58963364 - MER4B LTR ERV1 -764 15 1 1083 169 11 5 chr13 42910633 42910817 -58962352 + AluJo SINE Alu 3 187 -125 772 111 8 0 chr13 42910917 42911034 -58962135 - L1PA8 LINE L1 -173 5999 5882 472 281 97 39 chr13 42911060 42911568 -58961601 + L1ME4a LINE L1 5574 6110 -11 326 267 73 7 chr13 42912372 42912522 -58960647 + L2 LINE L2 1700 1859 -1455 22 35 0 0 chr13 42913220 42913249 -58959920 + AT_rich Low_complexity Low_complexity 1 29 0 265 258 16 0 chr13 42914321 42914383 -58958786 - MIR3 SINE MIR -7 201 139 665 292 14 39 chr13 42915298 42915579 -58957590 - MER93a LTR ERV1 0 402 129 2887 128 31 8 chr13 42915583 42916170 -58956999 + L1M2 LINE L1 5152 5747 -544 264 359 84 21 chr13 42917195 42917337 -58955832 + L2 LINE L2 3122 3272 0 25 31 0 0 chr13 42917380 42917412 -58955757 + AT_rich Low_complexity Low_complexity 1 32 0 239 262 24 48 chr13 42917596 42917680 -58955489 + MIR SINE MIR 111 192 -70 596 170 9 0 chr13 42918638 42918744 -58954425 + MLT2B1 LTR ERVL 414 520 0 21 0 0 0 chr13 42919073 42919094 -58954075 + AT_rich Low_complexity Low_complexity 1 21 0 1796 163 0 13 chr13 42919184 42919484 -58953685 - AluSx SINE Alu -16 296 1 2011 107 45 63 chr13 42919879 42920261 -58952908 - THE1C LTR MaLR 0 375 1 1418 189 21 104 chr13 42920745 42921121 -58952048 + MLT1A1 LTR MaLR 21 365 0 1355 285 65 30 chr13 42921128 42921655 -58951514 - MLT1H LTR MaLR -2 547 3 1140 268 93 59 chr13 42923008 42923501 -58949668 - MLT1H LTR MaLR 0 549 40 1648 221 36 36 chr13 42924292 42924735 -58948434 + MLT1C LTR MaLR 1 443 -24 1387 220 156 32 chr13 42924765 42925235 -58947934 - MER34 LTR ERV1 0 542 24 360 0 0 0 chr13 42926231 42926271 -58946898 + (CA)n Simple_repeat Simple_repeat 2 41 0 395 298 216 18 chr13 42926296 42926514 -58946655 + MIR SINE MIR 1 261 -1 27 0 0 0 chr13 42927129 42927156 -58946013 + AT_rich Low_complexity Low_complexity 1 27 0 2121 119 0 3 chr13 42927259 42927544 -58945625 - AluSc SINE Alu -25 284 1 401 318 101 0 chr13 42927918 42928107 -58945062 + MLT1I LTR MaLR 11 218 -191 477 305 29 29 chr13 42928567 42928777 -58944392 + MLT1I LTR MaLR 198 407 -2 23 33 0 0 chr13 42928938 42928968 -58944201 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr13 42929242 42929284 -58943885 + AT_rich Low_complexity Low_complexity 1 42 0 225 242 48 0 chr13 42929506 42929568 -58943601 - L2 LINE L2 -213 3059 2995 335 87 0 0 chr13 42929641 42929687 -58943482 + MADE1 DNA Mariner 34 79 -1 303 127 0 0 chr13 42930958 42931021 -58942148 + (A)n Simple_repeat Simple_repeat 1 63 0 210 258 96 39 chr13 42931033 42931178 -58941991 + MIR SINE MIR 37 189 -73 1951 130 3 17 chr13 42931191 42931551 -58941618 + AluSx SINE Alu 1 356 0 257 272 204 10 chr13 42932467 42932570 -58940599 - MIR SINE MIR -58 150 28 273 283 81 20 chr13 42933251 42933350 -58939819 + MIR SINE MIR 145 249 -13 1643 197 71 111 chr13 42933394 42934057 -58939112 + L1MD2 LINE L1 5716 6350 -9 2175 51 0 0 chr13 42934632 42934887 -58938282 + AluY SINE Alu 1 255 -56 693 193 234 11 chr13 42935353 42935618 -58937551 - MER5C DNA MER1_type 0 324 1 2255 100 0 0 chr13 42937269 42937560 -58935609 - AluSx SINE Alu -21 291 1 30 0 0 0 chr13 42937563 42937593 -58935576 + AT_rich Low_complexity Low_complexity 1 30 0 3502 128 15 36 chr13 42937599 42938064 -58935105 - L1MA5 LINE L1 -3 6297 5824 1979 109 13 48 chr13 42938064 42938375 -58934794 - AluSq SINE Alu -11 302 3 3502 128 15 36 chr13 42938375 42938426 -58934743 - L1MA5 LINE L1 -476 5824 5773 234 62 0 0 chr13 42938426 42938458 -58934711 + (TA)n Simple_repeat Simple_repeat 2 33 0 690 182 91 45 chr13 42938464 42938646 -58934523 - FRAM SINE Alu 0 166 5 3502 128 15 36 chr13 42938646 42938778 -58934391 - L1MA5 LINE L1 -532 5768 5655 204 158 0 0 chr13 42939384 42939422 -58933747 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 529 176 46 30 chr13 42939774 42939905 -58933264 + L1MA8 LINE L1 6058 6190 -101 551 114 57 0 chr13 42939959 42940064 -58933105 + L1MA8 LINE L1 6181 6291 0 1671 173 32 0 chr13 42940078 42940356 -58932813 + AluJb SINE Alu 1 287 -25 604 270 139 9 chr13 42940475 42940705 -58932464 + MIR SINE MIR 3 262 0 222 394 56 19 chr13 42941285 42941501 -58931668 + L3 LINE CR1 190 413 -1164 414 198 103 0 chr13 42942964 42943080 -58930089 + L1MC4 LINE L1 6922 7049 -993 1087 254 164 28 chr13 42943121 42943652 -58929517 + L1MC4 LINE L1 7242 7844 -198 1363 132 0 10 chr13 42943828 42944033 -58929136 + AluSx SINE Alu 5 207 -105 234 0 0 0 chr13 42944931 42944957 -58928212 + (A)n Simple_repeat Simple_repeat 1 26 0 2352 65 0 39 chr13 42945512 42945819 -58927350 + AluY SINE Alu 16 310 -1 337 327 183 51 chr13 42947226 42948219 -58924950 - L2 LINE L2 -657 2657 1430 2381 92 0 13 chr13 42948219 42948534 -58924635 + AluY SINE Alu 1 311 0 337 327 183 51 chr13 42948534 42948914 -58924255 - L2 LINE L2 -1884 1430 1102 723 312 137 22 chr13 42949991 42950841 -58922328 - L2 LINE L2 -4 3309 2375 1898 203 30 140 chr13 42951857 42952517 -58920652 + L1MC4a LINE L1 6283 6855 -953 2219 84 0 0 chr13 42952517 42952812 -58920357 - AluSc SINE Alu 0 299 5 1898 203 30 140 chr13 42952812 42952893 -58920276 + L1MC4a LINE L1 6855 6943 -865 495 101 13 0 chr13 42953196 42953275 -58919894 - MADE1 DNA Mariner 0 80 1 1232 169 5 10 chr13 42953757 42953964 -58919205 - AluJo SINE Alu -106 206 1 295 233 151 115 chr13 42954438 42954717 -58918452 - L2 LINE L2 0 3313 3025 817 273 138 15 chr13 42954719 42955118 -58918051 + MLT1L LTR MaLR 168 615 0 1895 160 3 19 chr13 42955613 42955926 -58917243 - AluJb SINE Alu -3 309 2 2186 244 54 16 chr13 42955993 42956571 -58916598 + MLT1E2 LTR MaLR 25 624 -2 554 241 226 19 chr13 42956754 42957020 -58916149 - MLT1H LTR MaLR 0 549 229 1972 172 31 18 chr13 42957105 42957489 -58915680 - MLT1B LTR MaLR 0 390 2 881 254 9 5 chr13 42957659 42957879 -58915290 + MER58A DNA MER1_type 2 222 -2 338 351 23 52 chr13 42960852 42961026 -58912143 + MER91A DNA MER1_type 28 196 0 2375 81 10 3 chr13 42961468 42961776 -58911393 + AluSp SINE Alu 1 310 -3 1742 149 89 0 chr13 42962970 42963286 -58909883 - MER2 DNA MER2_type 0 344 1 195 200 25 25 chr13 42963286 42963326 -58909843 - L2 LINE L2 -18 3295 3256 * 284 267 46 61 chr13 42963301 42963432 -58909737 - MIR SINE MIR -27 235 107 861 266 28 48 chr13 42963743 42963991 -58909178 - MIR SINE MIR 0 262 20 196 368 93 15 chr13 42964393 42964597 -58908572 + MIR SINE MIR 29 248 -14 2296 100 6 10 chr13 42964951 42965262 -58907907 + AluSg SINE Alu 1 310 0 205 320 100 0 chr13 42965872 42965972 -58907197 - L2 LINE L2 -2 3311 3202 2484 151 24 19 chr13 42966663 42967087 -58906082 + MSTB LTR MaLR 1 426 0 287 330 220 5 chr13 42967836 42968045 -58905124 - MIR SINE MIR -6 256 3 2110 75 55 38 chr13 42968233 42968346 -58904823 + AluY SINE Alu 6 116 -195 2385 77 3 0 chr13 42968346 42968656 -58904513 + AluY SINE Alu 1 311 0 2110 75 55 38 chr13 42968656 42968835 -58904334 + AluY SINE Alu 116 303 -8 25 0 0 0 chr13 42970060 42970085 -58903084 + AT_rich Low_complexity Low_complexity 1 25 0 2916 116 34 9 chr13 42971272 42971308 -58901861 - MLT2A2 LTR ERVL 0 453 419 225 0 0 0 chr13 42971308 42971333 -58901836 + (CA)n Simple_repeat Simple_repeat 2 26 0 2916 116 34 9 chr13 42971333 42971736 -58901433 - MLT2A2 LTR ERVL -34 419 3 1071 231 49 0 chr13 42971910 42972135 -58901034 - MIR SINE MIR -4 258 23 235 323 134 55 chr13 42972474 42972691 -58900478 + L2 LINE L2 3037 3270 -2 189 178 0 0 chr13 42973311 42973356 -58899813 + (CA)n Simple_repeat Simple_repeat 2 46 0 386 117 17 0 chr13 42974287 42974347 -58898822 - U7 snRNA snRNA -2 61 1 353 256 186 26 chr13 42974512 42974668 -58898501 - MER5A DNA MER1_type 0 189 9 180 352 39 16 chr13 42974968 42975096 -58898073 + L2 LINE L2 3137 3267 -5 381 318 60 7 chr13 42975590 42975741 -58897428 + MIR SINE MIR 32 190 -72 2602 231 92 13 chr13 42975861 42976064 -58897105 - MER21B LTR ERV1 -15 848 662 2323 70 0 0 chr13 42976064 42976381 -58896788 + AluY SINE Alu 1 317 0 2602 231 92 13 chr13 42976381 42976872 -58896297 - MER21B LTR ERV1 -201 662 98 392 235 12 0 chr13 42976982 42977067 -58896102 - MER21B LTR ERV1 -773 90 5 828 207 11 6 chr13 42978693 42978872 -58894297 + MER3 DNA MER1_type 1 180 -29 1391 161 9 0 chr13 42979009 42979262 -58893907 - AluSx SINE Alu 0 316 62 216 281 171 0 chr13 42979432 42979514 -58893655 + L3b LINE CR1 1348 1443 -140 12558 222 45 18 chr13 42979643 42980274 -58892895 - L1MB1 LINE L1 -5 5987 5374 1836 90 41 0 chr13 42980274 42980518 -58892651 - AluSq SINE Alu -16 297 44 12558 222 45 18 chr13 42980518 42985366 -58887803 - L1MB1 LINE L1 -618 5374 390 294 95 0 48 chr13 42985436 42985499 -58887670 + (TTC)n Simple_repeat Simple_repeat 1 60 0 335 289 13 40 chr13 42985579 42985731 -58887438 - L1MB1 LINE L1 -5487 404 257 297 381 0 40 chr13 42985800 42985973 -58887196 - L1M3de LINE L1 -5219 1434 1269 491 348 19 0 chr13 42985984 42986191 -58886978 - L1MB1 LINE L1 -5679 212 2 1507 185 118 14 chr13 42986292 42986648 -58886521 - MLT2C1 LTR ERVL -3 394 2 335 315 31 8 chr13 42986676 42986806 -58886363 - MIR3 SINE MIR -4 204 72 3968 164 94 11 chr13 42987041 42987803 -58885366 - LTR1B LTR ERV1 0 826 1 474 224 0 0 chr13 42988989 42989087 -58884082 - MER5A DNA MER1_type -83 106 9 239 290 130 0 chr13 42989142 42989242 -58883927 - MIR SINE MIR -50 212 100 317 303 119 0 chr13 42990899 42991008 -58882161 - MER5A DNA MER1_type 0 189 68 * 428 263 119 0 chr13 42991000 42991160 -58882009 - MIR3 SINE MIR -15 193 15 440 274 178 6 chr13 42991192 42991349 -58881820 - MER5A DNA MER1_type -2 187 4 2160 96 10 7 chr13 42991890 42992191 -58880978 + AluY SINE Alu 2 303 -8 1522 151 0 8 chr13 42992190 42992429 -58880740 + AluSg/x SINE Alu 74 310 0 * 339 282 150 81 chr13 42992704 42992977 -58880192 - L2 LINE L2 -5 3267 2976 218 295 16 66 chr13 42993033 42993088 -58880081 + MIR SINE MIR 20 76 -186 1964 125 33 7 chr13 42993088 42993392 -58879777 - AluSx SINE Alu 0 312 1 218 295 16 66 chr13 42993392 42993458 -58879711 + MIR SINE MIR 76 135 -127 1484 213 57 42 chr13 42993718 42994173 -58878996 + MLT1C LTR MaLR 6 467 0 1453 232 47 17 chr13 42994227 42994778 -58878391 + MLT2F LTR ERVL 1 609 -54 271 222 120 60 chr13 42996294 42996411 -58876758 + MIR SINE MIR 68 191 -71 222 286 104 0 chr13 42996847 42996924 -58876245 + L3b LINE CR1 1407 1491 -92 1104 304 179 24 chr13 42998143 42998854 -58874315 - L3 LINE CR1 -7 1570 750 202 195 24 0 chr13 42998857 42998898 -58874271 - L3b LINE CR1 -15 1568 1527 1927 166 0 3 chr13 42999075 42999377 -58873792 + AluJb SINE Alu 1 301 -11 250 290 100 10 chr13 42999613 42999713 -58873456 + MIR SINE MIR 44 152 -56 2146 152 0 0 chr13 42999792 43000094 -58873075 + AluSx SINE Alu 1 302 -10 465 241 128 8 chr13 43000413 43000546 -58872623 - MIR3 SINE MIR -19 189 41 555 173 0 0 chr13 43001304 43001407 -58871762 - MER5A DNA MER1_type -83 106 4 205 330 123 66 chr13 43003380 43003698 -58869471 + L2 LINE L2 2572 2907 -407 2141 113 7 3 chr13 43005189 43005489 -58867680 - AluY SINE Alu -10 301 1 211 388 58 0 chr13 43005521 43005642 -58867527 - L2 LINE L2 -6 3266 3139 1619 140 25 146 chr13 43006061 43006505 -58866664 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 43007975 43007997 -58865172 + AT_rich Low_complexity Low_complexity 1 22 0 1124 193 65 88 chr13 43008017 43008416 -58864753 + MLT1B LTR MaLR 1 390 0 371 266 170 26 chr13 43008503 43008732 -58864437 + L2 LINE L2 3052 3313 0 209 290 210 32 chr13 43009535 43009659 -58863510 + MIR SINE MIR 73 218 -44 243 0 0 0 chr13 43010798 43010825 -58862344 + (T)n Simple_repeat Simple_repeat 1 27 0 331 235 32 26 chr13 43012092 43012403 -58860766 + (TG)n Simple_repeat Simple_repeat 1 313 0 627 216 58 22 chr13 43012708 43012847 -58860322 + MIR SINE MIR 13 156 -106 6301 103 63 59 chr13 43012849 43014690 -58858479 - pTR5 LTR ERV1 0 2438 741 213 65 0 0 chr13 43016171 43016202 -58856967 + (T)n Simple_repeat Simple_repeat 1 31 0 198 304 67 44 chr13 43017635 43017770 -58855399 + L2 LINE L2 2722 2859 -455 1840 238 36 70 chr13 43017986 43018604 -58854565 + MLT1E2 LTR MaLR 24 620 -6 500 259 107 36 chr13 43018634 43018858 -58854311 + MIR SINE MIR 8 247 -15 1167 130 5 0 chr13 43019031 43019231 -58853938 + L1PB1 LINE L1 1 201 -6662 11895 191 42 23 chr13 43019231 43023767 -58849402 + L1PB1 LINE L1 635 5085 -1782 2366 104 0 0 chr13 43023767 43024076 -58849093 + AluY SINE Alu 1 309 -2 11895 191 42 23 chr13 43024076 43025124 -58848045 + L1PB1 LINE L1 5085 6475 -392 2101 126 3 0 chr13 43025124 43025417 -58847752 + AluSx SINE Alu 1 294 -18 11895 191 42 23 chr13 43025417 43025535 -58847634 + L1PB1 LINE L1 6475 6589 -278 5708 148 5 11 chr13 43025539 43027139 -58846030 - L1PB1 LINE L1 -1 6150 4556 1934 102 21 3 chr13 43027139 43027423 -58845746 + L1PB1 LINE L1 6574 6862 -5 2456 90 0 3 chr13 43027910 43028222 -58844947 - AluY SINE Alu 0 311 1 327 331 8 8 chr13 43028403 43028527 -58844642 + MIR3 SINE MIR 75 198 -10 715 279 39 14 chr13 43029809 43030092 -58843077 + L1MEc LINE L1 10 299 -6097 321 169 11 0 chr13 43030103 43030192 -58842977 + MER96B DNA MER1_type? 85 174 -243 1280 263 25 21 chr13 43030261 43030744 -58842425 - L1M4 LINE L1 -985 5161 4677 615 111 0 10 chr13 43030756 43030855 -58842314 - Charlie3 DNA MER1_type 0 2712 2615 364 350 41 12 chr13 43031418 43031758 -58841411 - L1MEc LINE L1 -5990 406 57 1027 207 68 44 chr13 43031770 43032108 -58841061 - HsTC2 DNA Tc2 -109 1789 1268 594 217 22 7 chr13 43032115 43032253 -58840916 - HsTC2 DNA Tc2 -1758 140 1 216 250 18 0 chr13 43032566 43032622 -58840547 - MIR SINE MIR -2 260 204 1865 198 6 8 chr13 43032996 43033355 -58839814 + MLT1A1 LTR MaLR 1 358 -7 2468 78 3 10 chr13 43033500 43033809 -58839360 + AluSp SINE Alu 1 307 -6 335 146 0 18 chr13 43033918 43033973 -58839196 + Tigger2 DNA MER2_type 1 54 -2664 2268 126 61 7 chr13 43033977 43034389 -58838780 + Tigger2 DNA MER2_type 2285 2718 0 1915 134 50 20 chr13 43034422 43034779 -58838390 + THE1C LTR MaLR 8 375 0 325 409 0 0 chr13 43034836 43034963 -58838206 - MIR SINE MIR -108 154 28 377 276 69 55 chr13 43034978 43035123 -58838046 + MIR3 SINE MIR 62 208 0 821 177 0 0 chr13 43035338 43035468 -58837701 - FLAM_A SINE Alu -3 130 1 207 0 0 0 chr13 43035494 43035517 -58837652 + (T)n Simple_repeat Simple_repeat 1 23 0 591 176 8 15 chr13 43036088 43036219 -58836950 - MSTD LTR MaLR -266 130 1 1301 81 0 16 chr13 43036998 43037183 -58835986 - L1PA8 LINE L1 0 6172 5991 186 43 0 0 chr13 43037204 43037227 -58835942 + (A)n Simple_repeat Simple_repeat 1 23 0 1754 186 7 7 chr13 43039442 43039748 -58833421 + AluJo SINE Alu 1 306 -6 1327 226 117 32 chr13 43041234 43041677 -58831492 - MLT1D LTR MaLR 0 505 25 342 321 149 20 chr13 43043005 43043307 -58829862 + L2 LINE L2 2504 2844 -470 313 261 7 7 chr13 43044675 43044813 -58828356 + CT-rich Low_complexity Low_complexity 2 139 0 313 333 93 54 chr13 43045458 43045812 -58827357 - L2 LINE L2 -522 2792 2425 2346 101 7 0 chr13 43046371 43046677 -58826492 - AluSp SINE Alu -5 308 1 322 329 70 6 chr13 43047146 43047304 -58825865 + MIR3 SINE MIR 41 208 0 1861 130 0 4 chr13 43047361 43047623 -58825546 - AluSx SINE Alu -45 267 7 1348 192 124 112 chr13 43047914 43048715 -58824454 + LTR1B LTR ERV1 13 822 -4 2633 55 0 3 chr13 43052145 43052456 -58820713 - AluY SINE Alu -1 310 1 562 125 0 0 chr13 43052565 43052661 -58820508 + MER53 DNA DNA 94 189 0 583 299 45 45 chr13 43053189 43053410 -58819759 + L2 LINE L2 2 222 -3092 3501 276 101 87 chr13 43053437 43054590 -58818579 + L2 LINE L2 780 1916 -1397 2269 91 47 0 chr13 43054590 43054887 -58818282 - AluSx SINE Alu -1 311 1 3501 276 101 87 chr13 43054887 43056234 -58816935 + L2 LINE L2 1916 3313 0 219 190 138 0 chr13 43057353 43057411 -58815758 - L3b LINE CR1 -196 1387 1322 847 171 5 57 chr13 43058764 43058823 -58814346 + MER96B DNA MER1_type? 35 96 -321 1957 119 0 52 chr13 43058823 43059133 -58814036 - AluSg SINE Alu -16 294 1 847 171 5 57 chr13 43059133 43059284 -58813885 + MER96B DNA MER1_type? 96 234 -183 212 0 36 0 chr13 43059412 43059440 -58813729 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr13 43059651 43059681 -58813488 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 43060039 43060059 -58813110 + (T)n Simple_repeat Simple_repeat 1 20 0 816 229 93 95 chr13 43060406 43060881 -58812288 - MLT1J LTR MaLR -34 477 4 435 52 0 0 chr13 43061371 43061429 -58811740 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 203 182 23 0 chr13 43063902 43063946 -58809223 + (CA)n Simple_repeat Simple_repeat 2 46 0 1962 157 3 3 chr13 43065288 43065640 -58807529 + L1MA4A LINE L1 5832 6182 -121 21 0 0 0 chr13 43066009 43066030 -58807139 + AT_rich Low_complexity Low_complexity 1 21 0 2499 40 20 16 chr13 43066068 43066371 -58806798 + AluY SINE Alu 1 304 -7 389 150 50 30 chr13 43066557 43066657 -58806512 - L1MA4A LINE L1 -5 6298 6197 590 295 29 9 chr13 43067289 43067499 -58805670 - L2 LINE L2 -256 3057 2844 325 170 160 0 chr13 43067500 43067600 -58805569 + HAL1b LINE L1 770 885 -463 293 205 0 26 chr13 43067814 43067892 -58805277 + CT-rich Low_complexity Low_complexity 4 79 0 1609 136 92 28 chr13 43068842 43069159 -58804010 + MER1B DNA MER1_type 1 337 0 291 182 13 91 chr13 43069171 43069248 -58803921 + MLT1I LTR MaLR 68 138 -271 301 322 52 35 chr13 43069748 43069863 -58803306 - L2 LINE L2 -17 3255 3139 281 308 62 52 chr13 43070199 43070488 -58802681 - L2 LINE L2 -666 2648 2357 395 266 140 21 chr13 43070779 43070922 -58802247 + MIR SINE MIR 82 241 -21 211 377 55 7 chr13 43071171 43071317 -58801852 - MIR SINE MIR -57 205 53 181 309 0 36 chr13 43071567 43071622 -58801547 - MIR3 SINE MIR -48 160 108 1048 277 160 34 chr13 43071812 43072718 -58800451 + L2 LINE L2 2302 3313 0 25 0 0 0 chr13 43072779 43072804 -58800365 + AT_rich Low_complexity Low_complexity 1 25 0 2175 119 6 8 chr13 43074024 43074384 -58798785 - MER6 DNA MER2_type 0 865 507 907 230 44 54 chr13 43074392 43074709 -58798460 + MER69 DNA AcHobo 48 361 -865 898 238 27 9 chr13 43074923 43075146 -58798023 + LTR16B LTR ERVL 238 464 0 473 212 29 59 chr13 43075574 43075718 -58797451 + MER69 DNA AcHobo 2045 2185 -341 1540 194 26 59 chr13 43075718 43075883 -58797286 + MLT1A2 LTR MaLR 1 170 -204 2220 118 3 0 chr13 43075883 43076179 -58796990 + AluSx SINE Alu 3 299 -13 1540 194 26 59 chr13 43076179 43076400 -58796769 + MLT1A2 LTR MaLR 170 374 0 473 212 29 59 chr13 43076400 43076425 -58796744 + MER69 DNA AcHobo 2185 2209 -317 636 186 50 111 chr13 43076446 43076645 -58796524 + MER20 DNA MER1_type 28 214 -5 359 214 237 23 chr13 43076659 43076921 -58796248 + MER69 DNA AcHobo 2202 2519 -7 214 353 136 15 chr13 43077245 43077517 -58795652 + L2 LINE L2 2457 2761 -553 385 301 0 8 chr13 43077687 43077820 -58795349 + MER94 DNA DNA 1 132 -2 366 358 55 79 chr13 43078159 43078413 -58794756 + L2 LINE L2 3025 3272 0 308 287 11 23 chr13 43078610 43078697 -58794472 - MIR3 SINE MIR -10 198 113 1046 301 70 0 chr13 43078836 43079208 -58793961 - LTR16A LTR ERVL 0 450 53 383 348 93 34 chr13 43079431 43079819 -58793350 - L1 LINE L1 -2162 3984 3574 388 174 22 0 chr13 43080338 43080430 -58792739 + CT-rich Low_complexity Low_complexity 2 95 0 31 92 0 0 chr13 43080665 43080752 -58792417 + AT_rich Low_complexity Low_complexity 1 87 0 1850 164 0 23 chr13 43081542 43081852 -58791317 - AluJb SINE Alu -7 305 3 1367 138 38 8 chr13 43081887 43082126 -58791043 - L1PA16 LINE L1 -9 6157 5912 2702 137 14 12 chr13 43084051 43084481 -58788688 + MSTB1 LTR MaLR 1 431 -1 1165 124 30 5 chr13 43085222 43085423 -58787746 + L1PB2 LINE L1 5944 6149 -2 249 362 0 11 chr13 43085454 43085548 -58787621 + MIR SINE MIR 49 141 -121 205 278 37 0 chr13 43085699 43085753 -58787416 + L2 LINE L2 3258 3313 0 28 86 0 0 chr13 43085863 43085933 -58787236 + AT_rich Low_complexity Low_complexity 1 70 0 1790 155 3 23 chr13 43086444 43086753 -58786416 + AluJb SINE Alu 1 303 -9 396 296 9 0 chr13 43086973 43087088 -58786081 + MER94 DNA DNA 16 131 -3 387 301 60 11 chr13 43087622 43087805 -58785364 + MLT1K LTR MaLR 386 577 -11 408 40 0 0 chr13 43087847 43087897 -58785272 + (TG)n Simple_repeat Simple_repeat 1 50 0 219 36 0 0 chr13 43087896 43087924 -58785245 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2029 109 0 4 chr13 43087925 43088200 -58784969 - AluSc SINE Alu -35 274 1 786 202 44 20 chr13 43088200 43088403 -58784766 + MER21B LTR ERV1 641 848 -15 381 318 60 7 chr13 43088523 43088674 -58784495 - MIR SINE MIR -72 190 32 180 352 39 16 chr13 43089168 43089296 -58783873 - L2 LINE L2 -5 3267 3137 353 256 186 26 chr13 43089596 43089752 -58783417 + MER5A DNA MER1_type 9 189 0 386 117 17 0 chr13 43089917 43089977 -58783192 + U7 snRNA snRNA 1 61 -2 189 178 0 0 chr13 43090910 43090955 -58782214 + (TG)n Simple_repeat Simple_repeat 2 46 0 235 323 134 55 chr13 43091575 43091792 -58781377 - L2 LINE L2 -2 3270 3037 1071 231 49 0 chr13 43092131 43092356 -58780813 + MIR SINE MIR 23 258 -4 2604 109 12 27 chr13 43092530 43092934 -58780235 + MLT2A1 LTR ERVL 3 400 -44 877 176 1 6 chr13 43093232 43094038 -58779131 - BSR/Beta Satellite Satellite 0 802 1 * 1317 122 0 4 chr13 43094033 43094262 -58778907 + LSAU Satellite Satellite 1 228 -270 2512 81 7 0 chr13 43094608 43094916 -58778253 + AluSg SINE Alu 1 310 0 365 55 0 36 chr13 43095004 43095059 -58778110 - HAL1 LINE L1 -10 2497 2445 229 167 0 67 chr13 43095078 43095138 -58778031 - L1PA16 LINE L1 -23 6143 6088 * 3386 224 108 11 chr13 43095132 43096188 -58776981 + L1PB1 LINE L1 6 1163 -5700 10006 197 58 14 chr13 43096212 43099676 -58773493 + L1PB1 LINE L1 1339 5183 -1684 333 0 0 0 chr13 43099676 43099713 -58773456 + (CA)n Simple_repeat Simple_repeat 2 38 0 10006 197 58 14 chr13 43099713 43101476 -58771693 + L1PB1 LINE L1 5183 6867 0 4755 131 11 5 chr13 43101504 43102296 -58770873 - L1PA16 LINE L1 -55 6111 5315 575 264 98 39 chr13 43102311 43102594 -58770575 - HAL1 LINE L1 -111 2396 2074 2438 64 0 16 chr13 43102594 43102908 -58770261 - AluY SINE Alu -2 309 1 575 264 98 39 chr13 43102908 43103083 -58770086 - HAL1 LINE L1 -433 2074 1911 12628 190 49 81 chr13 43103114 43103361 -58769808 - L1MA6 LINE L1 -2 7319 7066 2193 139 0 0 chr13 43103361 43103670 -58769499 + AluSx SINE Alu 1 309 -3 12628 190 49 81 chr13 43103670 43105027 -58768142 - L1MA6 LINE L1 -255 7066 5667 1903 113 0 4 chr13 43105027 43105275 -58767894 + AluSx SINE Alu 61 307 -5 12628 190 49 81 chr13 43105275 43107604 -58765565 - L1MA6 LINE L1 -1654 5667 3264 1942 180 0 0 chr13 43107604 43107904 -58765265 - AluJb SINE Alu -12 300 1 12628 190 49 81 chr13 43107904 43109192 -58763977 - L1MA6 LINE L1 -4057 3264 1936 2372 90 3 3 chr13 43109192 43109502 -58763667 + AluY SINE Alu 1 310 -1 12628 190 49 81 chr13 43109502 43111811 -58761358 - L1MA6 LINE L1 -5385 1936 4 2303 88 0 0 chr13 43111961 43112257 -58760912 - AluY SINE Alu -15 296 1 436 284 196 0 chr13 43112326 43112576 -58760593 - HAL1 LINE L1 -736 1771 1473 901 219 10 5 chr13 43112582 43112774 -58760395 + MER58A DNA MER1_type 1 193 -31 253 224 219 45 chr13 43112829 43113030 -58760139 - HAL1 LINE L1 -1044 1463 1228 1087 261 96 30 chr13 43113184 43113717 -58759452 - HAL1 LINE L1 -1478 1029 462 240 224 40 13 chr13 43114267 43114343 -58758826 - HAL1 LINE L1 -2131 376 299 444 230 146 38 chr13 43114348 43114561 -58758608 - HAL1 LINE L1 -2251 256 21 429 311 186 29 chr13 43114608 43114952 -58758217 + L2 LINE L2 2811 3208 -105 217 186 23 0 chr13 43115229 43115272 -58757897 + T-rich Low_complexity Low_complexity 3 46 0 547 130 9 9 chr13 43115272 43115387 -58757782 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 26 30 0 0 chr13 43115851 43115884 -58757285 + AT_rich Low_complexity Low_complexity 1 33 0 255 266 190 0 chr13 43116130 43116209 -58756960 + MIR3 SINE MIR 105 198 -10 193 208 42 21 chr13 43117072 43117120 -58756049 + L2 LINE L2 3216 3264 -8 1912 155 39 3 chr13 43117422 43117757 -58755412 + MER7A DNA MER2_type 2 346 0 543 244 128 6 chr13 43118219 43118399 -58754770 + MIR SINE MIR 49 250 -12 9516 158 45 11 chr13 43119771 43122300 -58750869 + L1M1 LINE L1 11 2681 -4884 2486 86 0 0 chr13 43122300 43122603 -58750566 + AluSc SINE Alu 1 303 -6 9516 158 45 11 chr13 43122603 43122621 -58750548 + L1M1 LINE L1 2681 2697 -4868 2337 115 20 20 chr13 43122621 43123011 -58750158 + L1MA2 LINE L1 5915 6304 0 207 356 22 0 chr13 43123337 43123427 -58749742 - MIR SINE MIR -111 151 60 1647 174 53 3 chr13 43123584 43123866 -58749303 + AluSx SINE Alu 4 299 -13 193 215 13 13 chr13 43124732 43124811 -58748358 + GA-rich Low_complexity Low_complexity 5 83 0 449 262 6 92 chr13 43127453 43127617 -58745552 - MER5B DNA MER1_type 0 178 29 238 315 72 18 chr13 43127743 43127854 -58745315 - L2 LINE L2 0 3313 3197 1511 167 117 0 chr13 43127997 43128261 -58744908 - AluJb SINE Alu -17 295 1 265 280 75 19 chr13 43128305 43128412 -58744757 + MLT1H LTR MaLR 50 162 -387 245 201 42 146 chr13 43128585 43128729 -58744440 + MLT1H LTR MaLR 421 549 0 294 313 24 0 chr13 43128780 43128863 -58744306 + L2 LINE L2 3184 3268 -4 187 433 37 15 chr13 43128829 43128963 -58744206 - L2 LINE L2 -50 3222 3086 * 335 224 119 45 chr13 43129841 43129975 -58743194 - HAL1 LINE L1 -2363 144 1 419 300 34 9 chr13 43129982 43130215 -58742954 + L1ME4a LINE L1 5710 5948 -173 192 422 0 0 chr13 43131278 43131368 -58741801 - L2 LINE L2 -397 2916 2827 336 295 85 39 chr13 43131803 43131932 -58741237 + L2 LINE L2 3134 3268 -4 1590 251 36 9 chr13 43131932 43132399 -58740770 + L1MC4 LINE L1 6830 7309 -733 634 242 107 46 chr13 43132489 43132816 -58740353 + L1MC4 LINE L1 7692 8038 -4 2310 100 3 0 chr13 43133080 43133381 -58739788 + AluSc SINE Alu 1 302 -7 1998 129 5 58 chr13 43133472 43133651 -58739518 + MER46B DNA MER2_type 2 189 -2542 914 128 0 0 chr13 43133651 43133784 -58739385 + FLAM_C SINE Alu 1 133 0 1998 129 5 58 chr13 43133784 43133795 -58739374 + MER46B DNA MER2_type 189 199 -2532 2302 100 0 29 chr13 43133795 43134105 -58739064 + AluSg SINE Alu 2 302 -8 1998 129 5 58 chr13 43134105 43134293 -58738876 + MER46B DNA MER2_type 199 236 0 234 0 0 0 chr13 43135420 43135446 -58737723 + (A)n Simple_repeat Simple_repeat 1 26 0 526 155 6 138 chr13 43135824 43135998 -58737171 - MLT2C2 LTR ERVL 0 397 247 5336 154 27 12 chr13 43136021 43137196 -58735973 - L1MA8 LINE L1 -1 6290 5098 1396 162 4 15 chr13 43137196 43137462 -58735707 - MLT2C2 LTR ERVL -201 263 1 301 284 71 10 chr13 43137537 43137704 -58735465 - L1ME LINE L1 -397 5765 5575 1989 113 6 35 chr13 43137704 43138015 -58735154 + AluSx SINE Alu 1 302 -10 301 284 71 10 chr13 43138015 43138042 -58735127 - L1ME LINE L1 -587 5575 5551 448 283 87 70 chr13 43138260 43138490 -58734679 - L2 LINE L2 0 3272 3039 1241 193 65 38 chr13 43138679 43139042 -58734127 + MLT2B1 LTR ERVL 4 374 -40 363 60 0 0 chr13 43139042 43139092 -58734077 + (TG)n Simple_repeat Simple_repeat 2 51 0 1241 193 65 38 chr13 43139092 43139135 -58734034 + MLT2B1 LTR ERVL 374 414 0 712 251 116 20 chr13 43140381 43140503 -58732666 + HAL1 LINE L1 769 878 -1629 186 43 0 0 chr13 43140503 43140526 -58732643 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 712 251 116 20 chr13 43140526 43140757 -58732412 + HAL1 LINE L1 878 1156 -1351 328 226 98 45 chr13 43140908 43141041 -58732128 + HAL1 LINE L1 1667 1806 -701 544 240 140 69 chr13 43141103 43141582 -58731587 + HAL1 LINE L1 1995 2507 0 366 237 0 10 chr13 43141591 43141688 -58731481 - L1ME LINE L1 -425 5696 5601 7252 44 1 9 chr13 43141813 43142774 -58730395 + L1PA6 LINE L1 5201 6154 0 23 68 0 0 chr13 43142875 43142919 -58730250 + AT_rich Low_complexity Low_complexity 1 44 0 4958 131 53 2 chr13 43142977 43143785 -58729384 - HUERS-P3b LTR ERV1 -331 7087 6239 180 0 0 0 chr13 43143787 43143807 -58729362 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1440 218 77 10 chr13 43143858 43144248 -58728921 - LTR52 LTR ERVL -3 418 3 180 97 0 0 chr13 43145310 43145341 -58727828 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 1785 60 4 0 chr13 43145341 43145576 -58727593 - LTR17 LTR ERV1 -455 325 90 377 289 132 19 chr13 43147636 43147795 -58725374 + MIR3 SINE MIR 30 206 -2 2283 87 3 0 chr13 43148827 43149113 -58724056 - AluSc SINE Alu -22 287 1 1410 137 9 5 chr13 43149247 43149459 -58723710 - AluJo SINE Alu -99 213 1 915 179 6 28 chr13 43149986 43150178 -58722991 - MER20 DNA MER1_type -32 187 4 206 319 33 22 chr13 43150282 43150373 -58722796 - MIR SINE MIR -50 212 121 244 296 173 0 chr13 43150527 43150608 -58722561 - MIR3 SINE MIR -21 187 93 1992 180 18 55 chr13 43150633 43151121 -58722048 - MER31A LTR ERV1 -9 476 7 489 34 0 0 chr13 43151227 43151286 -58721883 + (TATG)n Simple_repeat Simple_repeat 4 62 0 2375 109 22 27 chr13 43151707 43152073 -58721096 - THE1B LTR MaLR 0 364 1 225 275 58 0 chr13 43152103 43152172 -58720997 + L2 LINE L2 3176 3248 -65 1033 184 42 17 chr13 43152422 43152661 -58720508 + LTR38 LTR ERV1 152 396 -160 303 253 0 22 chr13 43152676 43152767 -58720402 + MER87 LTR ERV1 395 483 -58 2327 84 0 44 chr13 43153034 43153354 -58719815 - AluY SINE Alu -5 306 1 236 246 35 0 chr13 43154450 43154507 -58718662 + MIR SINE MIR 97 155 -107 684 334 58 15 chr13 43155303 43155713 -58717456 + LTR16A LTR ERVL 16 443 -7 5735 115 26 0 chr13 43155976 43156914 -58716255 + L1PA14 LINE L1 5197 6157 -4 231 36 0 0 chr13 43156957 43156985 -58716184 + (A)n Simple_repeat Simple_repeat 1 28 0 1194 183 204 52 chr13 43157057 43157352 -58715817 - MSTD LTR MaLR 0 396 40 3333 118 4 24 chr13 43157352 43157859 -58715310 + LOR1a LTR ERV1 1 497 0 1194 183 204 52 chr13 43157859 43157907 -58715262 - MSTD LTR MaLR -356 40 1 185 205 26 0 chr13 43158958 43158997 -58714172 - L2 LINE L2 -2 3311 3272 1400 231 54 8 chr13 43159467 43159840 -58713329 - MLT1B LTR MaLR 0 390 1 5192 88 34 3 chr13 43159870 43160640 -58712529 - L1MA2 LINE L1 0 6304 5511 359 381 40 0 chr13 43160755 43160881 -58712288 + L2 LINE L2 3137 3267 -5 197 333 29 0 chr13 43161226 43161295 -58711874 - MIR SINE MIR -90 118 48 723 174 0 0 chr13 43161947 43162062 -58711107 + AluJb SINE Alu 1 115 -197 1150 155 16 36 chr13 43162077 43162270 -58710899 + AluJb SINE Alu 91 279 -33 210 294 0 0 chr13 43162270 43162321 -58710848 + (TA)n Simple_repeat Simple_repeat 2 52 0 342 0 0 0 chr13 43162322 43162360 -58710809 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 59 29 0 chr13 43162362 43162396 -58710773 + (GA)n Simple_repeat Simple_repeat 2 36 0 908 171 41 5 chr13 43162675 43162991 -58710178 - MLT1B LTR MaLR -2 388 3 1536 166 3 59 chr13 43163270 43163559 -58709610 - AluJb SINE Alu 0 312 40 362 356 53 0 chr13 43163739 43163871 -58709298 + MER91C DNA MER1_type 2 140 0 639 223 23 0 chr13 43164086 43164216 -58708953 - MIR SINE MIR -68 194 62 22 35 0 0 chr13 43165074 43165103 -58708066 + AT_rich Low_complexity Low_complexity 1 29 0 725 256 81 51 chr13 43165841 43166271 -58706898 - L1MC4 LINE L1 -95 7947 7505 539 241 138 31 chr13 43166288 43166608 -58706561 - L1MC4a LINE L1 -1496 6312 5959 346 250 29 39 chr13 43166625 43166729 -58706440 + L1MC4 LINE L1 6614 6716 -1326 584 233 102 5 chr13 43166766 43166981 -58706188 - L1MC4a LINE L1 -2048 5760 5525 516 300 30 39 chr13 43166981 43167211 -58705958 - MIR SINE MIR -31 231 4 2424 82 3 0 chr13 43167499 43167804 -58705365 + AluY SINE Alu 1 306 -5 409 299 137 64 chr13 43168096 43168354 -58704815 - L2 LINE L2 -248 3065 2781 2155 96 10 3 chr13 43168354 43168647 -58704522 + AluSq SINE Alu 1 295 -18 409 299 137 64 chr13 43168647 43168670 -58704499 - L2 LINE L2 -532 2781 2761 1489 180 49 55 chr13 43168840 43169207 -58703962 + MLT1A1 LTR MaLR 1 365 0 212 188 75 0 chr13 43170095 43170175 -58702994 + (CATAT)n Simple_repeat Simple_repeat 4 89 0 276 77 0 0 chr13 43170825 43170864 -58702305 + (CA)n Simple_repeat Simple_repeat 2 40 0 548 187 313 5 chr13 43171537 43171751 -58701418 - LTR50 LTR ERVL 0 795 516 593 262 149 23 chr13 43171774 43172076 -58701093 - LTR50 LTR ERVL -451 344 5 355 225 108 17 chr13 43172273 43172393 -58700776 - MIR SINE MIR -9 253 123 1090 155 5 0 chr13 43172739 43172932 -58700237 + L1PBa LINE L1 7 200 -6663 9006 114 121 7 chr13 43172932 43174506 -58698663 + L1PBa LINE L1 634 2386 -4477 2808 212 36 3 chr13 43174508 43175238 -58697931 + L1 LINE L1 3231 3984 -2878 * 4695 190 4 1 chr13 43175233 43176771 -58696398 + L1P5 LINE L1 4243 5784 -367 775 97 0 0 chr13 43176771 43176885 -58696284 + L1PB1 LINE L1 6038 6151 0 297 257 127 55 chr13 43176916 43177128 -58696041 - HAL1 LINE L1 -1553 954 720 2318 120 0 3 chr13 43177128 43177437 -58695732 - AluSx SINE Alu -4 308 1 297 257 127 55 chr13 43177437 43177477 -58695692 - HAL1 LINE L1 -1787 720 684 1118 252 175 27 chr13 43177556 43178140 -58695029 - L1MC4 LINE L1 -131 7911 7242 786 260 105 12 chr13 43178121 43178446 -58694723 - L1MC4 LINE L1 -929 7066 6723 * 49 43 0 0 chr13 43178597 43178667 -58694502 + AT_rich Low_complexity Low_complexity 1 70 0 562 251 145 18 chr13 43178729 43178956 -58694213 + L1MC4 LINE L1 7167 7502 -386 1009 264 60 35 chr13 43179231 43179628 -58693541 - LTR16C LTR ERVL 0 491 85 638 162 15 157 chr13 43179800 43179997 -58693172 + FAM SINE Alu 1 169 -6 228 254 118 18 chr13 43180015 43180125 -58693044 - L1MC4 LINE L1 -1329 6713 6593 537 330 80 0 chr13 43180127 43180351 -58692818 - MIR SINE MIR -8 254 13 21 0 0 0 chr13 43181117 43181138 -58692031 + AT_rich Low_complexity Low_complexity 1 21 0 586 235 8 22 chr13 43181354 43181587 -58691582 + MER87 LTR ERV1 1 274 -267 7050 47 1 12 chr13 43181598 43182395 -58690774 - L1PA7 LINE L1 0 6154 5350 2211 114 7 0 chr13 43182395 43182694 -58690475 - AluY SINE Alu -10 301 1 7050 47 1 12 chr13 43182694 43183630 -58689539 - L1PA7 LINE L1 -804 5350 4429 13098 124 15 28 chr13 43183630 43186926 -58686243 - L1P3 LINE L1 -3124 3337 8 1046 244 4 8 chr13 43186948 43187198 -58685971 + MER87 LTR ERV1 293 541 0 1614 179 25 47 chr13 43187240 43187369 -58685800 + AluJb SINE Alu 1 131 -181 2069 120 3 43 chr13 43187369 43187693 -58685476 + AluSq SINE Alu 1 311 -2 1614 179 25 47 chr13 43187693 43187882 -58685287 + AluJb SINE Alu 131 312 0 220 323 0 0 chr13 43189304 43189366 -58683803 + (TG)n Simple_repeat Simple_repeat 1 62 0 297 296 92 0 chr13 43189596 43189694 -58683475 + L2 LINE L2 3156 3262 -10 521 316 9 33 chr13 43190079 43190291 -58682878 + MIR SINE MIR 48 254 -8 1571 238 52 33 chr13 43191271 43191311 -58681858 - MER77 LTR ERV1 -51 554 516 1882 135 48 58 chr13 43191311 43191513 -58681656 - THE1C LTR MaLR 0 375 177 2189 135 0 0 chr13 43191513 43191817 -58681352 - AluSq SINE Alu -8 305 2 1882 135 48 58 chr13 43191817 43191993 -58681176 - THE1C LTR MaLR -198 177 1 1571 238 52 33 chr13 43191993 43192436 -58680733 - MER77 LTR ERV1 -89 516 62 2437 72 0 13 chr13 43193263 43193569 -58679600 - AluY SINE Alu -9 302 1 858 219 0 22 chr13 43193609 43193787 -58679382 + FAM SINE Alu 1 174 -1 218 178 22 0 chr13 43194427 43194472 -58678697 + L2 LINE L2 3268 3313 0 247 246 18 0 chr13 43195227 43195284 -58677885 + CT-rich Low_complexity Low_complexity 3 60 0 22 35 0 0 chr13 43195508 43195537 -58677632 + AT_rich Low_complexity Low_complexity 1 29 0 302 293 20 20 chr13 43195728 43195827 -58677342 - MIR3 SINE MIR -46 162 64 21 71 0 0 chr13 43196699 43196741 -58676428 + AT_rich Low_complexity Low_complexity 1 42 0 2289 112 0 0 chr13 43196925 43197229 -58675940 - AluSg SINE Alu -6 304 1 530 266 100 48 chr13 43197965 43198194 -58674975 + MIR SINE MIR 22 262 0 1588 115 45 0 chr13 43198231 43198500 -58674669 + L1MA5A LINE L1 6014 6294 -3 209 310 56 0 chr13 43198704 43198775 -58674394 + MIR SINE MIR 13 87 -175 222 362 69 0 chr13 43200808 43200924 -58672245 + MIR SINE MIR 94 217 -45 382 295 9 0 chr13 43201034 43201146 -58672023 + MLT1L LTR MaLR 134 246 -369 2039 146 10 0 chr13 43201421 43201729 -58671440 + AluSx SINE Alu 1 311 -1 1723 50 129 0 chr13 43201998 43202238 -58670931 + AluY SINE Alu 3 273 -38 346 345 81 0 chr13 43202938 43203086 -58670083 - MIR SINE MIR -56 206 47 1550 204 112 22 chr13 43203214 43203616 -58669553 + MER74C LTR ERVL 16 453 -7 220 370 87 16 chr13 43203645 43203772 -58669397 + MIR3 SINE MIR 9 144 -64 2283 101 3 3 chr13 43203980 43204277 -58668892 + AluSp SINE Alu 1 297 -16 233 281 0 0 chr13 43204479 43204536 -58668633 + CT-rich Low_complexity Low_complexity 4 60 0 462 294 99 38 chr13 43205562 43205855 -58667314 + LTR16A1 LTR ERVL 147 457 0 2387 88 3 0 chr13 43206057 43206353 -58666816 + AluSp SINE Alu 1 297 -16 1968 198 28 24 chr13 43206591 43207145 -58666024 - MLT1F1 LTR MaLR 0 567 1 222 260 0 0 chr13 43208009 43208059 -58665110 + L2 LINE L2 3222 3271 -1 564 299 96 52 chr13 43208250 43208415 -58664754 - L2 LINE L2 0 3313 3157 1813 121 80 52 chr13 43208415 43208779 -58664390 - THE1C LTR MaLR 0 375 2 564 299 96 52 chr13 43208779 43208977 -58664192 - L2 LINE L2 -156 3157 2934 699 233 52 9 chr13 43209053 43209285 -58663884 + L1MD3 LINE L1 7754 7995 0 341 296 98 61 chr13 43209319 43209596 -58663573 - L2 LINE L2 -459 2855 2569 2194 130 0 0 chr13 43209638 43209946 -58663223 - AluSx SINE Alu 0 312 5 480 284 134 40 chr13 43212172 43212648 -58660521 - LTR33 LTR ERVL 0 521 1 414 269 61 66 chr13 43212879 43213091 -58660078 - MIR SINE MIR -50 212 2 317 349 41 14 chr13 43213523 43213669 -58659500 + MER5A DNA MER1_type 1 150 -39 204 40 0 0 chr13 43215481 43215506 -58657663 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2091 117 3 0 chr13 43215509 43215792 -58657377 - AluSx SINE Alu -27 285 2 22 35 0 0 chr13 43216038 43216067 -58657102 + AT_rich Low_complexity Low_complexity 1 29 0 2610 161 4 25 chr13 43216456 43216946 -58656223 + MER66B LTR ERV1 6 485 -1 917 158 31 72 chr13 43217229 43217451 -58655718 + MER20 DNA MER1_type 3 215 -4 1427 190 13 40 chr13 43217759 43218059 -58655110 - AluJo SINE Alu -9 303 12 215 314 109 39 chr13 43218370 43218526 -58654643 - MIR SINE MIR -76 186 20 2211 101 6 25 chr13 43222235 43222553 -58650616 - AluSp SINE Alu -1 312 1 441 0 0 0 chr13 43222553 43222602 -58650567 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1969 133 4 4 chr13 43222602 43222881 -58650288 - AluSg SINE Alu -31 279 1 259 223 256 41 chr13 43223071 43223192 -58649977 - MIR SINE MIR -101 161 15 429 318 70 45 chr13 43223542 43223743 -58649426 - MIR SINE MIR -46 216 11 366 243 243 21 chr13 43224120 43224264 -58648905 - MER5A DNA MER1_type -1 188 13 295 188 0 0 chr13 43224358 43224406 -58648763 - L2 LINE L2 -2 3270 3223 263 314 0 0 chr13 43224638 43224708 -58648461 - L2 LINE L2 -6 3266 3197 295 326 183 11 chr13 43224909 43225084 -58648085 + MIR SINE MIR 26 230 -32 1157 126 51 0 chr13 43225235 43225410 -58647759 - AluSq SINE Alu -11 302 119 209 139 23 0 chr13 43226281 43226324 -58646845 + (TG)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chr13 43227411 43227432 -58645737 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 183 42 0 0 chr13 43227484 43227508 -58645661 + (TG)n Simple_repeat Simple_repeat 2 25 0 2491 152 50 76 chr13 43228642 43228779 -58644390 - L1MA7 LINE L1 0 6291 6152 257 30 0 0 chr13 43228779 43228812 -58644357 - U2 snRNA snRNA -155 33 1 2491 152 50 76 chr13 43228812 43229262 -58643907 - L1MA7 LINE L1 -139 6152 5688 524 276 153 18 chr13 43229503 43229731 -58643438 + MIR SINE MIR 2 260 -2 618 277 40 33 chr13 43229933 43230207 -58642962 + MARNA DNA Mariner 43 318 -268 198 103 0 0 chr13 43230222 43230251 -58642918 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 346 172 280 11 chr13 43230271 43230364 -58642805 - L2 LINE L2 -5 3308 3191 198 103 0 0 chr13 43230370 43230399 -58642770 + (T)n Simple_repeat Simple_repeat 1 29 0 784 290 79 28 chr13 43230844 43231310 -58641859 + Tigger8 DNA MER2_type 159 648 -18 371 282 34 0 chr13 43231316 43231465 -58641704 + L1ME4a LINE L1 5717 5870 -251 1194 129 67 5 chr13 43231497 43231721 -58641448 + L1MB1 LINE L1 5924 6161 -7 801 184 7 0 chr13 43231774 43231910 -58641259 - FRAM SINE Alu -7 169 33 462 101 0 0 chr13 43231936 43232005 -58641164 + (CA)n Simple_repeat Simple_repeat 2 70 0 232 164 182 0 chr13 43232061 43232116 -58641053 + L1ME4a LINE L1 5977 6041 -80 21 0 0 0 chr13 43232747 43232768 -58640401 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 43233574 43233604 -58639565 + AT_rich Low_complexity Low_complexity 1 30 0 1115 268 90 0 chr13 43233892 43233948 -58639221 + L2 LINE L2 2247 2297 -1017 2043 149 49 3 chr13 43233948 43234296 -58638873 + MLT1A1 LTR MaLR 2 365 0 1115 268 90 0 chr13 43234296 43234571 -58638598 + L2 LINE L2 2297 2608 -706 1801 165 93 5 chr13 43234591 43234979 -58638190 - L1MB5 LINE L1 -6 6168 5747 467 234 25 106 chr13 43234991 43235226 -58637943 + MER112 DNA MER1_type 4 219 -41 1764 181 0 7 chr13 43235342 43235634 -58637535 - AluJb SINE Alu -22 290 1 720 275 128 63 chr13 43235722 43236237 -58636932 + L2 LINE L2 2600 3142 -171 2326 88 10 0 chr13 43236237 43236533 -58636636 - AluSg SINE Alu -11 299 1 720 275 128 63 chr13 43236533 43236563 -58636606 + L2 LINE L2 3142 3169 -144 418 272 131 11 chr13 43236576 43236899 -58636270 - LTR16C LTR ERVL -14 477 71 584 239 62 17 chr13 43236938 43237114 -58636055 + L2 LINE L2 3130 3313 0 2127 136 0 3 chr13 43237936 43238246 -58634923 + AluSc SINE Alu 1 309 0 320 243 112 9 chr13 43238344 43238451 -58634718 - MIR SINE MIR -113 149 32 357 43 0 0 chr13 43238602 43238649 -58634520 + (TG)n Simple_repeat Simple_repeat 2 48 0 2687 97 5 20 chr13 43238654 43239057 -58634112 - L1PA12 LINE L1 -15 6153 5757 2008 133 0 0 chr13 43239203 43239526 -58633643 - AluSc SINE Alu 0 323 1 21 36 0 0 chr13 43240339 43240367 -58632802 + AT_rich Low_complexity Low_complexity 1 28 0 356 289 175 36 chr13 43240785 43240979 -58632190 + MIR SINE MIR 26 246 -16 302 317 39 50 chr13 43241631 43241811 -58631358 - L3 LINE CR1 -481 1096 919 200 273 0 36 chr13 43242223 43242278 -58630891 - MIR SINE MIR -6 256 204 22 0 0 0 chr13 43244088 43244110 -58629059 + AT_rich Low_complexity Low_complexity 1 22 0 213 235 0 0 chr13 43244673 43244724 -58628445 + (TA)n Simple_repeat Simple_repeat 1 51 0 353 359 48 55 chr13 43246704 43246906 -58626263 - L2 LINE L2 0 3272 3071 288 0 0 0 chr13 43246906 43246938 -58626231 + (TG)n Simple_repeat Simple_repeat 2 33 0 353 359 48 55 chr13 43246938 43247025 -58626144 - L2 LINE L2 -201 3071 2985 351 266 55 0 chr13 43247244 43247353 -58625816 - L2 LINE L2 0 3313 3199 278 26 26 0 chr13 43247953 43247992 -58625177 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 969 345 141 39 chr13 43247992 43248196 -58624973 - L2 LINE L2 -408 2906 2724 1615 153 0 15 chr13 43248196 43248458 -58624711 + AluSx SINE Alu 1 258 -54 969 345 141 39 chr13 43248458 43249327 -58623842 - L2 LINE L2 -590 2724 1653 2270 67 0 44 chr13 43249327 43249643 -58623526 - AluY SINE Alu -2 309 8 969 345 141 39 chr13 43249643 43249972 -58623197 - L2 LINE L2 -1661 1653 1359 2205 128 3 0 chr13 43250001 43250306 -58622863 - AluSx SINE Alu -6 306 1 200 367 189 19 chr13 43251123 43251320 -58621849 + L2 LINE L2 1704 1866 -1448 181 0 0 65 chr13 43251320 43251351 -58621818 + (TTG)n Simple_repeat Simple_repeat 2 30 0 200 367 189 19 chr13 43251351 43251744 -58621425 + L2 LINE L2 1866 2395 -919 253 258 22 11 chr13 43251799 43251888 -58621281 + MER5B DNA MER1_type 89 178 0 388 294 0 0 chr13 43251981 43252073 -58621096 + MIR SINE MIR 63 154 -108 3568 156 10 3 chr13 43252919 43253520 -58619649 + MER6A DNA MER2_type 1 605 0 2163 128 3 0 chr13 43253560 43253864 -58619305 + AluSx SINE Alu 1 305 -7 257 239 87 43 chr13 43253977 43254115 -58619054 - L1MC/D LINE L1 -1986 5822 5679 2409 118 19 16 chr13 43254435 43254808 -58618361 + THE1C LTR MaLR 2 375 0 9400 113 65 45 chr13 43254810 43256358 -58616811 + THE1C-int LTR MaLR 3 1580 0 2458 99 16 19 chr13 43256358 43256733 -58616436 + THE1C LTR MaLR 1 374 -1 237 333 20 10 chr13 43257125 43257224 -58615945 + MIR SINE MIR 48 147 -115 1763 162 0 29 chr13 43257706 43258020 -58615149 - MER1B DNA MER1_type 0 339 35 259 132 0 0 chr13 43257996 43258034 -58615135 + Charlie3 DNA MER1_type 37 74 -2636 * 317 277 99 75 chr13 43258383 43258596 -58614573 - L1MC/D LINE L1 -2009 5799 5582 275 328 49 16 chr13 43258609 43258731 -58614438 - L2 LINE L2 -478 2836 2711 336 299 43 24 chr13 43258746 43258910 -58614259 - LTR67 LTR ERVL 0 557 391 496 221 39 77 chr13 43259068 43259249 -58613920 - MER5B DNA MER1_type -1 177 4 336 319 232 8 chr13 43259789 43260030 -58613139 - L2 LINE L2 -995 2319 2025 4278 161 51 1 chr13 43260043 43260851 -58612318 + L1MB7 LINE L1 5337 6184 0 401 307 89 61 chr13 43260938 43261264 -58611905 - L2 LINE L2 -1418 1896 1562 23 0 0 0 chr13 43261457 43261480 -58611689 + AT_rich Low_complexity Low_complexity 1 23 0 253 345 79 0 chr13 43261784 43261923 -58611246 - MIR SINE MIR -106 156 7 267 352 41 38 chr13 43261955 43262222 -58610947 - L2 LINE L2 -2411 903 636 1141 272 83 23 chr13 43262530 43262916 -58610253 + L2 LINE L2 2902 3310 -3 4820 139 25 18 chr13 43263176 43263960 -58609209 - MER54B LTR ERVL -1 792 3 701 200 15 0 chr13 43264397 43264526 -58608643 + MER2 DNA MER2_type 1 131 -214 1943 139 69 74 chr13 43264526 43264709 -58608460 + Tigger2a DNA MER2_type 1 183 -2525 691 195 0 8 chr13 43264709 43264832 -58608337 + FLAM_A SINE Alu 1 122 -11 1943 139 69 74 chr13 43264832 43265081 -58608088 + Tigger2a DNA MER2_type 183 431 -3 447 101 38 0 chr13 43265084 43265163 -58608006 + MER2 DNA MER2_type 129 210 -135 357 216 27 0 chr13 43265192 43265266 -58607903 + MER2 DNA MER2_type 270 345 0 213 311 133 44 chr13 43265309 43265534 -58607635 - L2 LINE L2 -612 2702 2458 29297 111 13 59 chr13 43265974 43272422 -58600747 - L1PA7 LINE L1 0 6154 12 1040 179 0 34 chr13 43273373 43273552 -58599617 - FAM SINE Alu -2 173 1 24 0 0 0 chr13 43273599 43273623 -58599546 + AT_rich Low_complexity Low_complexity 1 24 0 190 318 218 9 chr13 43273641 43273751 -58599418 + L2 LINE L2 3137 3269 -3 2847 91 0 0 chr13 43274066 43274441 -58598728 - THE1C LTR MaLR 0 375 1 2531 303 120 17 chr13 43274866 43275817 -58597352 + L2 LINE L2 1808 2940 -373 1665 145 0 0 chr13 43275817 43276059 -58597110 - AluSx SINE Alu -13 299 58 2531 303 120 17 chr13 43276059 43276441 -58596728 + L2 LINE L2 2940 3281 -32 388 341 74 6 chr13 43276460 43276636 -58596533 - MIR SINE MIR -73 189 2 395 260 114 0 chr13 43277405 43277528 -58595641 + MIR SINE MIR 56 192 -70 897 194 104 15 chr13 43277602 43277803 -58595366 - MER20 DNA MER1_type 0 219 1 440 299 29 15 chr13 43277810 43277985 -58595184 - MIR SINE MIR -48 214 39 550 165 0 0 chr13 43278504 43278589 -58594580 + AluJ/FLAM SINE Alu 1 85 -227 421 365 147 16 chr13 43278667 43279218 -58593951 + L2 LINE L2 2006 2628 -686 347 302 26 38 chr13 43279240 43279433 -58593736 + L2 LINE L2 2772 2974 -298 2502 69 0 0 chr13 43280275 43280578 -58592591 - AluY SINE Alu -8 303 1 22 0 0 0 chr13 43281806 43281828 -58591341 + AT_rich Low_complexity Low_complexity 1 22 0 1830 143 0 54 chr13 43281838 43282152 -58591017 - AluSx SINE Alu -15 297 1 220 100 20 40 chr13 43285108 43285158 -58588011 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 224 307 0 4 chr13 43285252 43285342 -58587827 + MIR SINE MIR 59 146 -63 210 118 0 0 chr13 43286246 43286280 -58586889 + (CA)n Simple_repeat Simple_repeat 1 34 0 3012 213 76 58 chr13 43287398 43288293 -58584876 - L1MCb LINE L1 -4852 1193 563 228 35 0 0 chr13 43288293 43288322 -58584847 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3012 213 76 58 chr13 43288322 43288894 -58584275 - L1MCb LINE L1 -5482 563 3 191 318 0 30 chr13 43289072 43289138 -58584031 + MIR SINE MIR 86 149 -113 210 294 0 0 chr13 43290274 43290325 -58582844 - MIR SINE MIR -59 149 99 1887 191 20 0 chr13 43290392 43290749 -58582420 - L1PA16 LINE L1 -5 6161 5798 1619 178 50 0 chr13 43290751 43291071 -58582098 + L1 LINE L1 3980 4315 -1831 831 322 37 7 chr13 43293037 43293335 -58579834 + L3 LINE CR1 1257 1563 -14 2352 91 0 0 chr13 43293493 43293789 -58579380 + AluSc SINE Alu 1 296 -13 603 254 99 17 chr13 43293950 43294131 -58579038 - MLT1J LTR MaLR -63 448 253 325 280 59 59 chr13 43294759 43294877 -58578292 - L2 LINE L2 0 3313 3196 314 286 92 8 chr13 43295282 43295401 -58577768 - MIR SINE MIR -121 141 13 198 0 0 0 chr13 43295528 43295550 -58577619 + (TG)n Simple_repeat Simple_repeat 1 22 0 269 353 33 49 chr13 43295798 43295982 -58577187 + MIR SINE MIR 3 183 -79 196 283 0 17 chr13 43296005 43296065 -58577104 - MER5B DNA MER1_type -83 95 37 2318 237 85 7 chr13 43296065 43296779 -58576390 + L1MC4a LINE L1 7039 7808 0 215 289 0 0 chr13 43296792 43296837 -58576332 - MER5B DNA MER1_type -129 49 5 432 319 19 12 chr13 43297776 43297936 -58575233 + MIR SINE MIR 92 252 -10 359 21 21 0 chr13 43297944 43297992 -58575177 + (TG)n Simple_repeat Simple_repeat 2 50 0 2485 202 63 42 chr13 43298423 43298654 -58574515 + L1 LINE L1 2699 2924 -3222 716 180 0 50 chr13 43298654 43298793 -58574376 - FLAM_C SINE Alu 0 133 2 2485 202 63 42 chr13 43298793 43299424 -58573745 + L1 LINE L1 2924 3579 -2567 322 356 23 52 chr13 43299634 43299808 -58573361 - MER91A DNA MER1_type 0 196 28 2196 118 3 13 chr13 43301180 43301494 -58571675 + AluY SINE Alu 1 311 0 249 328 74 26 chr13 43301860 43302049 -58571120 - MLT1L LTR MaLR -65 550 353 826 220 24 19 chr13 43302098 43302307 -58570862 - MLT1A1 LTR MaLR -133 232 23 904 148 148 0 chr13 43302714 43302896 -58570273 - MER3 DNA MER1_type 0 209 1 237 171 114 14 chr13 43303355 43303425 -58569744 + MER68 LTR ERV1 438 514 -48 295 308 115 0 chr13 43303723 43303853 -58569316 + MIR SINE MIR 118 262 0 627 112 9 26 chr13 43304385 43304501 -58568668 + LTR9B LTR ERV1 445 558 -86 1302 208 13 18 chr13 43305161 43305477 -58567692 + MLT1A1 LTR MaLR 50 365 0 250 322 85 5 chr13 43306031 43306230 -58566939 + L1ME LINE L1 5637 5851 -270 617 285 82 43 chr13 43306446 43306913 -58566256 - MLT1J LTR MaLR -7 455 19 22 56 0 0 chr13 43307142 43307178 -58565991 + AT_rich Low_complexity Low_complexity 1 36 0 248 273 40 40 chr13 43307487 43307586 -58565583 + L3 LINE CR1 632 730 -847 14167 180 38 25 chr13 43308375 43310109 -58563060 + L1MA4 LINE L1 1 1711 -4771 252 59 0 0 chr13 43310109 43310143 -58563026 + (CA)n Simple_repeat Simple_repeat 1 34 0 14167 180 38 25 chr13 43310143 43311507 -58561662 + L1MA4 LINE L1 1711 3056 -3426 742 173 0 50 chr13 43311507 43311646 -58561523 - FLAM_C SINE Alu 0 133 2 14167 180 38 25 chr13 43311646 43313972 -58559197 + L1MA4 LINE L1 3056 5489 -993 297 0 0 0 chr13 43313972 43314005 -58559164 + (CA)n Simple_repeat Simple_repeat 2 34 0 14167 180 38 25 chr13 43314005 43314726 -58558443 + L1MA4 LINE L1 5489 6199 -283 23 0 0 0 chr13 43314736 43314759 -58558410 + AT_rich Low_complexity Low_complexity 1 23 0 2119 207 80 65 chr13 43315109 43315820 -58557349 - MER21B LTR ERV1 -48 815 94 856 296 77 27 chr13 43316192 43316709 -58556460 - ERVL LTR ERVL -341 5423 4881 702 181 20 7 chr13 43316801 43316950 -58556219 + MLT1A1 LTR MaLR 204 354 -11 978 255 34 10 chr13 43316961 43317259 -58555910 - ERVL LTR ERVL -939 4825 4521 387 60 0 0 chr13 43317493 43317543 -58555626 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 214 104 21 21 chr13 43317586 43317634 -58555535 + (TTC)n Simple_repeat Simple_repeat 1 48 0 193 375 10 0 chr13 43319147 43319243 -58553926 - L2 LINE L2 -665 2649 2553 2335 81 0 34 chr13 43319599 43319921 -58553248 - AluY SINE Alu 0 311 1 324 70 0 0 chr13 43319964 43320007 -58553162 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 253 0 0 chr13 43320727 43320806 -58552363 - MER116 DNA Mariner -1 79 1 255 309 106 24 chr13 43322021 43322144 -58551025 - L2 LINE L2 -1 3271 3139 471 268 3 13 chr13 43322442 43322594 -58550575 + MIR SINE MIR 8 143 -65 309 302 63 0 chr13 43322961 43323087 -58550082 - MIR3 SINE MIR -6 202 69 258 333 0 0 chr13 43323239 43323305 -58549864 - L2 LINE L2 -213 3059 2994 266 328 106 16 chr13 43323523 43323712 -58549457 + MIR SINE MIR 3 208 -54 22 0 0 0 chr13 43323908 43323930 -58549239 + AT_rich Low_complexity Low_complexity 1 22 0 2251 215 130 95 chr13 43325269 43326476 -58546693 + Charlie2a DNA MER1_type 1 1249 -1613 1253 120 32 33 chr13 43326480 43326739 -58546430 - THE1C LTR MaLR 0 428 158 864 97 0 9 chr13 43326739 43326852 -58546317 - AluSq/x SINE Alu -178 134 23 1052 134 0 0 chr13 43326853 43327002 -58546167 + AluSg/x SINE Alu 151 299 -13 35129 81 18 11 chr13 43327010 43333099 -58540070 + L1PA6 LINE L1 11 6141 -13 1203 106 6 18 chr13 43333099 43333297 -58539872 - THE1C LTR MaLR -153 202 1 582 177 21 95 chr13 43333313 43333470 -58539699 + Charlie2a DNA MER1_type 1257 1391 -1471 2115 107 3 7 chr13 43333470 43333759 -58539410 - AluSg SINE Alu -22 288 1 582 177 21 95 chr13 43333759 43333844 -58539325 + Charlie2a DNA MER1_type 1391 1481 -1381 21 0 0 0 chr13 43333846 43333867 -58539302 + AT_rich Low_complexity Low_complexity 1 21 0 3256 217 93 33 chr13 43333868 43334703 -58538466 + L1MDa LINE L1 3 787 -5753 2849 19 0 0 chr13 43334703 43335020 -58538149 + AluYb8 SINE Alu 1 317 -1 3256 217 93 33 chr13 43335020 43335388 -58537781 + L1MDa LINE L1 787 1132 -5408 1812 134 99 41 chr13 43335388 43335732 -58537437 - THE1B LTR MaLR 0 364 1 3256 217 93 33 chr13 43335732 43336660 -58536509 + L1MDa LINE L1 1132 2519 -4021 564 175 233 123 chr13 43336673 43336965 -58536204 + L1MD2 LINE L1 6010 6333 -26 784 228 72 50 chr13 43336965 43337324 -58535845 + Charlie2a DNA MER1_type 1496 1862 -1000 546 263 77 4 chr13 43337312 43337559 -58535610 + Charlie2a DNA MER1_type 2532 2796 -66 * 2087 224 91 33 chr13 43338151 43338853 -58534316 - HsTC2a DNA MER2_type 0 744 2 1806 281 20 92 chr13 43339187 43340256 -58532913 + L1M2 LINE L1 1 992 -5857 1371 217 22 12 chr13 43340260 43340769 -58532400 + L1M2 LINE L1 2733 3249 -3599 227 289 0 0 chr13 43340771 43340823 -58532346 + FRAM/FAM SINE Alu 2 53 -113 1270 189 26 10 chr13 43340857 43341159 -58532010 + L1MA4A LINE L1 5816 6122 -181 2222 92 3 13 chr13 43341162 43341466 -58531703 + AluY SINE Alu 1 301 -10 273 29 0 0 chr13 43341466 43341500 -58531669 + (TA)n Simple_repeat Simple_repeat 2 35 0 488 147 35 35 chr13 43341500 43341616 -58531553 + L1MA4A LINE L1 6182 6297 -6 354 167 7 65 chr13 43342026 43342164 -58531005 + GA-rich Low_complexity Low_complexity 2 131 0 1953 185 0 5 chr13 43342216 43342583 -58530586 + L1PB4 LINE L1 5786 6150 -6 2289 100 0 3 chr13 43342757 43343056 -58530113 + AluSg SINE Alu 1 298 -12 1921 270 94 21 chr13 43343094 43344085 -58529084 - L1ME LINE L1 -4996 1074 12 473 255 176 25 chr13 43344120 43344324 -58528845 - MIR SINE MIR -12 250 16 322 298 105 41 chr13 43344471 43344642 -58528527 - MER5A DNA MER1_type -1 188 7 316 273 224 22 chr13 43344758 43344941 -58528228 - MIR SINE MIR -37 225 6 971 206 43 123 chr13 43346322 43346719 -58526450 - MLT1A1 LTR MaLR 0 365 1 1710 171 7 23 chr13 43347119 43347424 -58525745 - AluJb SINE Alu -12 300 1 31 26 0 0 chr13 43347662 43347700 -58525469 + AT_rich Low_complexity Low_complexity 1 38 0 550 348 26 23 chr13 43347781 43348367 -58524802 - L1MC4a LINE L1 -1902 5906 5319 334 314 11 63 chr13 43348622 43348769 -58524400 - L1ME LINE L1 -449 5672 5536 2017 137 51 46 chr13 43348769 43349142 -58524027 - THE1C LTR MaLR 0 375 1 334 314 11 63 chr13 43349142 43349185 -58523984 - L1ME LINE L1 -585 5536 5492 1059 195 16 0 chr13 43349628 43349813 -58523356 - MER5A DNA MER1_type 0 189 2 414 316 13 53 chr13 43349914 43350081 -58523088 - L3b LINE CR1 -262 1321 1164 2230 87 7 0 chr13 43350081 43350367 -58522802 - AluY SINE Alu -23 288 1 414 316 13 53 chr13 43350367 43350424 -58522745 - L3b LINE CR1 -419 1164 1106 230 296 0 0 chr13 43350710 43350764 -58522405 - L2 LINE L2 0 3272 3219 548 173 87 0 chr13 43351642 43351746 -58521423 + L1M2c LINE L1 534 646 -6143 477 303 48 40 chr13 43351893 43352209 -58520960 + L1M4 LINE L1 3716 4037 -2109 2673 132 35 28 chr13 43352209 43352632 -58520537 - MSTB LTR MaLR 0 426 1 477 303 48 40 chr13 43352632 43352694 -58520475 + L1M4 LINE L1 4037 4097 -2049 10346 198 31 63 chr13 43352742 43354432 -58518737 + L1M2c LINE L1 4 1746 -5102 2088 139 10 0 chr13 43354432 43354734 -58518435 - AluSx SINE Alu -7 305 1 10346 198 31 63 chr13 43354734 43356834 -58516335 + L1M2c LINE L1 1746 3911 -2937 2206 117 0 7 chr13 43356834 43357141 -58516028 - AluSc SINE Alu -4 305 1 10346 198 31 63 chr13 43357141 43358683 -58514486 + L1M2c LINE L1 3911 5256 -1592 2377 86 7 3 chr13 43358683 43358984 -58514185 + AluSp SINE Alu 1 302 -11 10346 198 31 63 chr13 43358984 43358996 -58514173 + L1M2c LINE L1 5256 5267 -1581 553 80 0 13 chr13 43358996 43359071 -58514098 - THE1A LTR MaLR 0 355 282 309 79 0 0 chr13 43359060 43359098 -58514071 - THE1A LTR MaLR -317 38 1 * 22 35 0 0 chr13 43359802 43359831 -58513338 + AT_rich Low_complexity Low_complexity 1 29 0 229 361 131 0 chr13 43360462 43360592 -58512577 - L2 LINE L2 -5 3267 3121 1451 193 41 105 chr13 43360615 43360770 -58512399 - MER39 LTR ERV1 -2 666 503 1935 70 4 4 chr13 43360770 43361012 -58512157 + AluY SINE Alu 70 311 0 1451 193 41 105 chr13 43361012 43361409 -58511760 - MER39 LTR ERV1 -165 503 1 838 250 109 82 chr13 43361584 43362108 -58511061 + MLT1F LTR MaLR 5 542 0 351 232 65 72 chr13 43362569 43362707 -58510462 - L2 LINE L2 -2 3311 3175 354 308 45 32 chr13 43363059 43363215 -58509954 - L2 LINE L2 0 3313 3156 1736 223 138 5 chr13 43363222 43363649 -58509520 - MLT1D LTR MaLR 0 505 22 288 348 90 20 chr13 43363685 43363886 -58509283 - L2 LINE L2 -418 2896 2682 3377 288 120 26 chr13 43363886 43364726 -58508443 - L2 LINE L2 -1515 1799 1039 279 0 0 0 chr13 43364726 43364757 -58508412 + (CAAAC)n Simple_repeat Simple_repeat 2 32 0 3377 288 120 26 chr13 43364757 43365478 -58507691 - L2 LINE L2 -2275 1039 92 902 198 12 0 chr13 43365498 43365660 -58507509 - MER58B DNA MER1_type -10 331 168 286 289 70 40 chr13 43365892 43366093 -58507076 - L2 LINE L2 -857 2457 2251 308 330 9 9 chr13 43366760 43366869 -58506300 + MIR SINE MIR 33 141 -67 398 276 71 0 chr13 43369019 43369117 -58504052 - L2 LINE L2 0 3272 3168 692 300 113 61 chr13 43369408 43370287 -58502882 + L2 LINE L2 2378 3313 0 411 332 75 36 chr13 43370436 43370689 -58502480 - L2 LINE L2 -408 2906 2644 445 286 41 14 chr13 43370836 43370983 -58502186 + MIR SINE MIR 3 153 -109 2037 195 50 44 chr13 43373161 43373663 -58499506 + MLT1D LTR MaLR 1 505 0 433 239 26 8 chr13 43374383 43374500 -58498669 - MIR SINE MIR -50 212 94 230 248 51 103 chr13 43375344 43375461 -58497708 - MIR SINE MIR -145 117 7 2346 106 0 0 chr13 43375728 43376030 -58497139 + AluSx SINE Alu 1 302 -10 2377 131 84 30 chr13 43376170 43376575 -58496594 + MSTA LTR MaLR 2 428 0 551 255 34 20 chr13 43376821 43376970 -58496199 - MLT1D LTR MaLR -354 151 1 384 373 22 13 chr13 43376974 43377199 -58495970 - L3 LINE CR1 -81 1496 1270 369 311 119 56 chr13 43377524 43378121 -58495048 + L2 LINE L2 2651 3310 -3 1043 249 47 0 chr13 43378327 43378540 -58494629 - MER58A DNA MER1_type 0 224 2 2268 144 29 27 chr13 43378709 43379083 -58494086 - THE1C LTR MaLR 0 375 1 389 352 65 0 chr13 43381020 43381219 -58491950 + LTR33 LTR ERVL 3 214 -307 433 216 196 14 chr13 43381283 43381431 -58491738 + LTR33 LTR ERVL 329 503 -18 480 295 41 97 chr13 43381548 43381648 -58491521 + L1M4 LINE L1 4624 4728 -1418 1464 201 3 41 chr13 43381648 43381966 -58491203 - AluJo SINE Alu -6 306 1 480 295 41 97 chr13 43381966 43382077 -58491092 + L1M4 LINE L1 4728 4844 -1302 2952 79 3 0 chr13 43382077 43382431 -58490738 + THE1A LTR MaLR 1 355 0 12008 101 16 1 chr13 43382431 43383987 -58489182 + THE1A-int LTR MaLR 1 1580 0 2711 88 35 0 chr13 43383987 43384330 -58488839 + THE1A LTR MaLR 1 355 0 480 295 41 97 chr13 43384330 43384600 -58488569 + L1M4 LINE L1 4841 5081 -1065 295 250 115 45 chr13 43384726 43384882 -58488287 + L1MEd LINE L1 4 170 -5949 1364 276 91 56 chr13 43385180 43385660 -58487509 + L1MEd LINE L1 572 1008 -5123 1992 157 0 0 chr13 43385660 43385953 -58487216 - AluSx SINE Alu -19 293 1 1364 276 91 56 chr13 43385953 43386459 -58486710 + L1MEd LINE L1 1008 1495 -4636 186 254 0 0 chr13 43386785 43386852 -58486317 + (TA)n Simple_repeat Simple_repeat 2 68 0 226 184 53 66 chr13 43387312 43387388 -58485781 + L1ME4a LINE L1 5989 6063 -58 689 261 107 18 chr13 43387812 43388138 -58485031 + MLT1J1 LTR MaLR 1 355 -91 1616 99 37 0 chr13 43388689 43388931 -58484238 + Tigger7 DNA MER2_type 2329 2579 -8 393 354 86 41 chr13 43391360 43391674 -58481495 + L2 LINE L2 2857 3184 -88 1450 116 18 109 chr13 43391674 43391896 -58481273 + Tigger2a DNA MER2_type 2 194 -2514 2309 109 0 0 chr13 43391896 43392207 -58480962 - AluY SINE Alu 0 311 1 1450 116 18 109 chr13 43392207 43392269 -58480900 + Tigger2a DNA MER2_type 194 260 -174 682 157 20 0 chr13 43392270 43392372 -58480797 + AluSq SINE Alu 2 105 -208 22 56 0 0 chr13 43392976 43393012 -58480157 + AT_rich Low_complexity Low_complexity 1 36 0 1540 123 0 0 chr13 43393031 43393235 -58479934 + AluSq SINE Alu 98 301 -12 1193 169 5 0 chr13 43393235 43393419 -58479750 + Tigger2a DNA MER2_type 250 434 0 216 0 0 0 chr13 43393656 43393680 -58479489 + (T)n Simple_repeat Simple_repeat 1 24 0 577 318 45 18 chr13 43394958 43395178 -58477991 + MIR SINE MIR 19 244 -18 191 248 181 57 chr13 43395685 43395790 -58477379 + MIR3 SINE MIR 91 208 0 288 368 119 0 chr13 43395794 43395987 -58477182 - L3 LINE CR1 -148 1429 1214 1745 142 130 6 chr13 43400305 43400629 -58472540 - THE1B LTR MaLR 0 364 1 279 0 0 0 chr13 43400672 43400703 -58472466 + (CA)n Simple_repeat Simple_repeat 1 31 0 2206 200 49 12 chr13 43400705 43401182 -58471987 - MLT2B1 LTR ERVL -20 534 4 2208 68 53 0 chr13 43401183 43401464 -58471705 + AluY SINE Alu 2 297 -14 1048 304 53 11 chr13 43404077 43404436 -58468733 + L2 LINE L2 2940 3313 0 236 135 0 39 chr13 43404637 43404689 -58468480 + (CATA)n Simple_repeat Simple_repeat 2 51 0 412 261 43 17 chr13 43405545 43405660 -58467509 + L2 LINE L2 3196 3313 0 257 230 14 0 chr13 43405820 43405894 -58467275 + (CATA)n Simple_repeat Simple_repeat 3 77 0 1644 261 90 58 chr13 43406265 43406996 -58466173 + L2 LINE L2 1205 1959 -1355 2414 50 7 7 chr13 43407592 43407892 -58465277 - AluY SINE Alu -11 300 1 406 183 0 0 chr13 43407930 43408001 -58465168 - AluJ/FLAM SINE Alu -238 74 4 229 302 45 28 chr13 43410234 43410413 -58462756 + L2 LINE L2 1789 1970 -1344 963 273 77 75 chr13 43410545 43411157 -58462012 + MER21B LTR ERV1 100 712 -151 269 238 0 32 chr13 43411246 43411309 -58461860 - MIR SINE MIR -50 212 152 366 283 40 73 chr13 43412019 43412069 -58461100 - MIR SINE MIR -11 251 201 1544 209 0 19 chr13 43412069 43412376 -58460793 - AluJo SINE Alu -11 301 1 366 283 40 73 chr13 43412376 43412394 -58460775 - MIR SINE MIR -61 201 184 2197 47 0 0 chr13 43412394 43412649 -58460520 - AluY SINE Alu -13 298 44 366 283 40 73 chr13 43412649 43412756 -58460413 - MIR SINE MIR -78 184 81 1056 305 41 23 chr13 43413131 43413521 -58459648 - L3 LINE CR1 -1 1576 1180 483 263 34 8 chr13 43414044 43414162 -58459007 + L2 LINE L2 3192 3312 -1 1284 163 49 52 chr13 43414341 43414666 -58458503 - MER33 DNA MER1_type 0 324 1 25 31 0 0 chr13 43417751 43417783 -58455386 + AT_rich Low_complexity Low_complexity 1 32 0 1795 153 0 38 chr13 43418196 43418510 -58454659 + AluJb SINE Alu 2 303 -9 353 318 121 9 chr13 43418660 43418883 -58454286 - MIR SINE MIR 0 262 15 941 146 7 0 chr13 43419353 43419497 -58453672 - FRAM SINE Alu -32 144 1 340 252 140 0 chr13 43420065 43420172 -58452997 - L2 LINE L2 0 3313 3192 288 333 71 7 chr13 43422512 43422653 -58450516 - MIR SINE MIR -92 170 21 209 250 21 0 chr13 43425488 43425536 -58447633 - L2 LINE L2 -10 3303 3255 210 71 0 0 chr13 43426802 43426830 -58446339 + (TG)n Simple_repeat Simple_repeat 2 29 0 222 257 0 119 chr13 43426972 43427073 -58446096 - MIR3 SINE MIR -31 177 89 184 310 141 0 chr13 43427328 43427399 -58445770 - MIR SINE MIR -71 137 57 520 308 66 91 chr13 43427764 43428173 -58444996 - L2 LINE L2 0 3272 2874 240 35 0 0 chr13 43429146 43429175 -58443994 + (T)n Simple_repeat Simple_repeat 1 29 0 224 300 29 0 chr13 43429591 43429661 -58443508 - MIR SINE MIR -64 144 73 476 285 119 48 chr13 43429913 43430374 -58442795 - L2 LINE L2 -103 3210 2711 2630 42 0 3 chr13 43434188 43434500 -58438669 + AluY SINE Alu 1 311 0 1104 250 205 19 chr13 43435999 43436518 -58436651 - L2 LINE L2 -2 3311 2708 407 245 9 19 chr13 43437700 43437806 -58435363 + MLT1J2 LTR MaLR 344 448 -2 321 237 26 103 chr13 43438440 43438596 -58434573 + L2 LINE L2 3169 3312 -1 326 329 194 17 chr13 43439763 43440000 -58433169 + L2 LINE L2 2805 3083 -230 189 0 0 0 chr13 43440052 43440073 -58433096 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1176 145 61 0 chr13 43440128 43440356 -58432813 + MER33 DNA MER1_type 1 242 -82 312 305 47 25 chr13 43440401 43440840 -58432329 - L1M4b LINE L1 -5002 1945 1346 430 189 28 63 chr13 43441496 43441539 -58431630 + L2 LINE L2 3114 3157 -156 1829 170 58 6 chr13 43441539 43441869 -58431300 + MER7A DNA MER2_type 1 345 -1 430 189 28 63 chr13 43441869 43441968 -58431201 + L2 LINE L2 3157 3251 -62 812 241 109 42 chr13 43442309 43442620 -58430549 - MARNA DNA Mariner -88 498 167 1839 167 42 3 chr13 43442997 43443327 -58429842 + MER2 DNA MER2_type 2 344 0 1053 241 34 40 chr13 43444723 43445076 -58428093 + L2 LINE L2 1417 1767 -1547 1182 165 62 50 chr13 43445076 43445318 -58427851 - AluJo SINE Alu -14 298 54 1504 268 77 12 chr13 43445319 43445800 -58427369 + L2 LINE L2 1759 2270 -1044 31 0 0 0 chr13 43445835 43445866 -58427303 + AT_rich Low_complexity Low_complexity 1 31 0 7796 19 0 0 chr13 43446286 43447269 -58425900 + L1PA3 LINE L1 5172 6154 -1 330 268 177 24 chr13 43447603 43447767 -58425402 + MIR SINE MIR 74 262 0 278 233 12 0 chr13 43448490 43448576 -58424593 + (CCA)n Simple_repeat Simple_repeat 2 88 0 475 283 82 38 chr13 43448617 43448801 -58424368 - MIR SINE MIR -48 214 23 198 348 14 0 chr13 43448797 43448866 -58424303 + L2 LINE L2 3244 3313 0 * 365 320 16 0 chr13 43449457 43449585 -58423584 + L2 LINE L2 2554 2683 -631 2151 136 12 18 chr13 43449835 43450166 -58423003 - MER1B DNA MER1_type -10 329 1 184 232 143 0 chr13 43450177 43450233 -58422936 + L2 LINE L2 3250 3313 0 526 212 119 8 chr13 43450253 43450371 -58422798 - FLAM_A SINE Alu -2 131 1 308 260 133 77 chr13 43450701 43450882 -58422287 + MLT1L LTR MaLR 200 390 -225 1300 206 3 50 chr13 43450961 43451094 -58422075 + AluJo SINE Alu 13 128 -184 2817 7 0 0 chr13 43451094 43451401 -58421768 + AluYa5 SINE Alu 1 307 -4 1300 206 3 50 chr13 43451401 43451549 -58421620 + AluJo SINE Alu 128 281 -31 228 226 57 0 chr13 43452275 43452328 -58420841 + L2 LINE L2 3254 3309 -4 338 399 19 0 chr13 43452494 43452652 -58420517 - L3 LINE CR1 -74 1503 1343 261 271 158 30 chr13 43452755 43452888 -58420281 + MIR SINE MIR 83 232 -30 2316 72 0 3 chr13 43453198 43453490 -58419679 - AluY SINE Alu -20 291 1 455 281 51 22 chr13 43453568 43453746 -58419423 - MIR SINE MIR -27 235 53 212 57 0 29 chr13 43454817 43454838 -58418331 + (CAAAC)n Simple_repeat Simple_repeat 1 54 0 212 57 0 29 chr13 43454838 43454873 -58418296 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 284 308 20 77 chr13 43455017 43455212 -58417957 - MIR SINE MIR -3 259 76 189 0 0 0 chr13 43456108 43456129 -58417040 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 379 316 106 55 chr13 43456720 43456976 -58416193 + MLT1J LTR MaLR 235 503 -8 802 144 352 37 chr13 43457036 43457321 -58415848 - Tigger3(Golem) DNA MER2_type -24 3005 2 34 89 0 0 chr13 43457409 43457499 -58415670 + AT_rich Low_complexity Low_complexity 1 90 0 201 431 65 0 chr13 43457526 43457649 -58415520 + L2 LINE L2 3141 3271 -1 246 62 0 0 chr13 43460475 43460507 -58412662 + (TG)n Simple_repeat Simple_repeat 1 32 0 2272 96 0 13 chr13 43460625 43460928 -58412241 - AluSg SINE Alu -11 299 1 195 42 0 0 chr13 43460975 43460999 -58412170 + (A)n Simple_repeat Simple_repeat 1 24 0 618 184 41 77 chr13 43461093 43461289 -58411880 + MER53 DNA DNA 1 189 0 21 36 0 0 chr13 43462979 43463007 -58410162 + AT_rich Low_complexity Low_complexity 1 28 0 685 238 31 54 chr13 43464481 43464704 -58408465 + MIR SINE MIR 45 262 0 787 202 113 101 chr13 43466481 43466817 -58406352 + L1MD2 LINE L1 5981 6320 -39 827 142 0 0 chr13 43466824 43466951 -58406218 - AluJb SINE Alu -5 307 181 577 294 42 60 chr13 43467650 43467915 -58405254 + MIR SINE MIR 3 262 0 1596 173 7 34 chr13 43469470 43469765 -58403404 - AluJo SINE Alu -19 293 7 494 202 55 93 chr13 43469915 43470098 -58403071 - MER112 DNA MER1_type -83 177 2 22 35 0 0 chr13 43471803 43471832 -58401337 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 43472435 43472456 -58400713 + AT_rich Low_complexity Low_complexity 1 21 0 5109 103 9 3 chr13 43472799 43473537 -58399632 - L1PA12 LINE L1 0 6168 5426 293 133 0 0 chr13 43473540 43473585 -58399584 - L1PA12 LINE L1 -775 5386 5342 * 4139 156 27 4 chr13 43473583 43474364 -58398805 + L1PA12 LINE L1 4544 5342 -804 216 363 50 0 chr13 43474406 43474486 -58398683 - L2 LINE L2 -2 3311 3228 280 229 206 53 chr13 43474635 43474805 -58398364 + MIR SINE MIR 48 243 -19 2042 128 3 3 chr13 43474901 43475205 -58397964 + AluSx SINE Alu 1 304 -8 224 300 29 0 chr13 43476818 43476888 -58396281 + MIR SINE MIR 73 144 -64 225 0 0 0 chr13 43477304 43477329 -58395840 + (A)n Simple_repeat Simple_repeat 1 25 0 850 212 67 40 chr13 43477884 43478198 -58394971 + MSTD LTR MaLR 45 396 0 192 200 0 0 chr13 43478303 43478348 -58394821 + (TA)n Simple_repeat Simple_repeat 1 45 0 231 226 71 0 chr13 43478351 43478435 -58394734 + L1MC4 LINE L1 6614 6703 -1339 353 252 84 98 chr13 43478465 43478501 -58394668 - HAL1 LINE L1 -1479 1028 993 1678 185 3 24 chr13 43478501 43478799 -58394370 + AluJo SINE Alu 1 292 -20 353 252 84 98 chr13 43478799 43478976 -58394193 - HAL1 LINE L1 -1514 993 818 304 231 0 0 chr13 43479373 43479425 -58393744 + MIR SINE MIR 2 53 -209 2140 188 24 15 chr13 43479568 43480031 -58393138 + MLT1C LTR MaLR 1 467 0 376 330 101 38 chr13 43480474 43480683 -58392486 - MIR SINE MIR -13 249 28 225 94 0 0 chr13 43481896 43481928 -58391241 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 678 163 0 0 chr13 43483743 43483884 -58389285 + GA-rich Low_complexity Low_complexity 2 142 0 422 229 139 63 chr13 43484384 43484607 -58388562 + L1ME LINE L1 5381 5620 -501 2730 33 0 0 chr13 43484707 43485014 -58388155 - AluY SINE Alu -4 307 1 636 259 106 24 chr13 43485254 43485952 -58387217 + L1MD2 LINE L1 5309 6165 -5 1719 169 3 44 chr13 43486083 43486403 -58386766 - AluJo SINE Alu -3 309 3 1878 80 0 16 chr13 43487013 43487297 -58385872 + AluSg SINE Alu 37 316 0 571 273 102 62 chr13 43489238 43489366 -58383803 - MLT1F LTR MaLR -252 290 169 2367 68 10 13 chr13 43489366 43489673 -58383496 - AluSc SINE Alu -3 306 1 571 273 102 62 chr13 43489673 43489819 -58383350 - MLT1F LTR MaLR -373 169 5 401 290 145 24 chr13 43490118 43490325 -58382844 - MIR SINE MIR -26 236 5 295 202 262 0 chr13 43490531 43490615 -58382554 - MER2 DNA MER2_type -172 173 68 395 316 156 28 chr13 43490815 43491033 -58382136 + MIR SINE MIR 8 253 -9 1279 158 194 0 chr13 43492053 43492306 -58380863 + AluJb SINE Alu 1 302 0 971 201 64 17 chr13 43492403 43492488 -58380681 - MER39 LTR ERV1 -12 695 615 2378 119 23 0 chr13 43492488 43492842 -58380327 - THE1B LTR MaLR 0 364 3 971 201 64 17 chr13 43492842 43493069 -58380100 - MER39 LTR ERV1 -92 615 331 598 178 0 46 chr13 43493138 43493312 -58379857 + GA-rich Low_complexity Low_complexity 2 167 0 222 353 19 66 chr13 43493725 43493983 -58379186 - L2 LINE L2 -601 2713 2468 354 211 63 11 chr13 43494640 43494735 -58378434 + L1ME3A LINE L1 6062 6161 -9 307 330 75 0 chr13 43494898 43495004 -58378165 - L2 LINE L2 -8 3264 3151 1455 63 117 5 chr13 43495007 43495213 -58377956 - MER30 DNA MER1_type 0 230 2 22 0 0 0 chr13 43496721 43496743 -58376426 + AT_rich Low_complexity Low_complexity 1 22 0 1876 151 7 10 chr13 43496797 43497101 -58376068 - AluSx SINE Alu -8 304 2 270 281 73 61 chr13 43497226 43497390 -58375779 + MER5B DNA MER1_type 13 178 0 2137 129 13 0 chr13 43499510 43499813 -58373356 + AluSx SINE Alu 1 307 -5 2564 60 0 0 chr13 43499817 43500119 -58373050 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 43500257 43500285 -58372884 + AT_rich Low_complexity Low_complexity 1 28 0 454 275 183 2 chr13 43502734 43502914 -58370255 - MIR SINE MIR -51 211 1 1937 153 3 3 chr13 43502946 43503246 -58369923 - AluJb SINE Alu -12 300 1 21 71 0 0 chr13 43503343 43503385 -58369784 + AT_rich Low_complexity Low_complexity 1 42 0 456 288 33 14 chr13 43504805 43504988 -58368181 + MIR SINE MIR 13 262 0 255 258 15 15 chr13 43505083 43505149 -58368020 + MIR SINE MIR 26 91 -171 595 230 45 22 chr13 43505383 43505561 -58367608 - MIR SINE MIR -13 249 68 23 0 0 0 chr13 43505888 43505911 -58367258 + AT_rich Low_complexity Low_complexity 1 23 0 328 343 59 29 chr13 43505930 43506169 -58367000 + L3 LINE CR1 664 909 -668 583 256 52 52 chr13 43506227 43506399 -58366770 + MER5B DNA MER1_type 1 172 -6 806 179 95 0 chr13 43506603 43506771 -58366398 + MER5A DNA MER1_type 3 186 -3 23 54 0 0 chr13 43508074 43508111 -58365058 + AT_rich Low_complexity Low_complexity 1 37 0 272 287 43 43 chr13 43508564 43508658 -58364511 - L2 LINE L2 -5 3308 3215 493 342 70 37 chr13 43509903 43510146 -58363023 + MIR SINE MIR 4 254 -8 180 77 0 0 chr13 43510147 43510173 -58362996 + (TTA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr13 43510942 43510965 -58362204 + AT_rich Low_complexity Low_complexity 1 23 0 261 217 76 12 chr13 43511133 43511219 -58361950 + MIR SINE MIR 34 133 -75 22 0 0 0 chr13 43512194 43512216 -58360953 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 43512501 43512532 -58360637 + AT_rich Low_complexity Low_complexity 1 31 0 2269 107 0 0 chr13 43513482 43513791 -58359378 - AluY SINE Alu -2 309 1 2749 245 106 48 chr13 43514878 43515179 -58357990 + L1MC4 LINE L1 6269 6551 -1257 219 36 0 0 chr13 43515179 43515207 -58357962 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2749 245 106 48 chr13 43515207 43516325 -58356844 + L1MC4 LINE L1 6551 7705 -103 573 301 112 65 chr13 43516366 43516688 -58356481 + L2 LINE L2 2932 3268 -4 203 179 0 0 chr13 43517156 43517195 -58355974 + T-rich Low_complexity Low_complexity 5 43 0 284 308 143 22 chr13 43517435 43517617 -58355552 + MIR SINE MIR 9 212 -50 2269 92 0 7 chr13 43517760 43518063 -58355106 - AluSx SINE Alu -11 301 1 197 300 14 43 chr13 43518230 43518300 -58354869 - L2 LINE L2 -3 3269 3202 238 314 12 47 chr13 43518507 43518593 -58354576 - L2 LINE L2 -258 3014 2932 26 0 0 0 chr13 43518726 43518752 -58354417 + AT_rich Low_complexity Low_complexity 1 26 0 266 301 91 14 chr13 43519048 43519191 -58353978 - L2 LINE L2 -942 2372 2219 806 228 85 88 chr13 43519342 43519764 -58353405 + HAL1 LINE L1 1388 1808 -699 1719 215 6 3 chr13 43520030 43520356 -58352813 + MLT1A1 LTR MaLR 39 365 0 202 224 0 0 chr13 43520383 43520432 -58352737 + A-rich Low_complexity Low_complexity 1 49 0 490 231 94 80 chr13 43520434 43520733 -58352436 + HAL1 LINE L1 2122 2424 -83 308 349 94 56 chr13 43521146 43521818 -58351351 - L2 LINE L2 -437 2877 2179 583 309 15 45 chr13 43521818 43522083 -58351086 + MIR SINE MIR 3 259 -3 2194 112 3 0 chr13 43522334 43522630 -58350539 - AluY SINE Alu -14 297 1 1869 138 0 4 chr13 43522656 43522924 -58350245 - AluSx SINE Alu -43 269 3 225 94 0 0 chr13 43523089 43523121 -58350048 + (CA)n Simple_repeat Simple_repeat 1 32 0 255 307 27 13 chr13 43523158 43523233 -58349936 - L3b LINE CR1 -114 1469 1394 669 258 84 18 chr13 43523628 43523853 -58349316 + MIR SINE MIR 20 259 -3 561 170 0 0 chr13 43524278 43524372 -58348797 + AluSg/x SINE Alu 196 289 -23 1587 178 29 0 chr13 43525076 43525352 -58347817 + AluJb SINE Alu 1 284 -28 713 221 0 8 chr13 43525686 43525817 -58347352 + FLAM_C SINE Alu 4 133 -10 1839 151 60 26 chr13 43525981 43526332 -58346837 + MLT1A1 LTR MaLR 3 365 0 813 273 61 68 chr13 43526337 43526587 -58346582 + L1MC4a LINE L1 5349 5599 -2209 725 187 0 0 chr13 43526587 43526710 -58346459 + FLAM_C SINE Alu 1 123 -10 813 273 61 68 chr13 43526710 43527002 -58346167 + L1MC4a LINE L1 5599 5887 -1921 280 394 53 0 chr13 43528099 43528269 -58344900 - L2 LINE L2 -861 2453 2275 188 222 74 19 chr13 43528283 43528337 -58344832 - L2 LINE L2 -1 3271 3215 1364 176 48 58 chr13 43529204 43529517 -58343652 - AluJo SINE Alu 0 312 3 22 35 0 0 chr13 43529551 43529580 -58343589 + AT_rich Low_complexity Low_complexity 1 29 0 504 319 72 25 chr13 43529598 43529833 -58343336 - MIR SINE MIR -6 256 11 758 323 184 39 chr13 43530286 43532017 -58341152 + L2 LINE L2 290 2292 -1022 518 236 36 0 chr13 43532017 43532127 -58341042 + MER81 DNA DNA 1 114 0 758 323 184 39 chr13 43532127 43532188 -58340981 + L2 LINE L2 2292 2343 -971 1913 131 62 3 chr13 43532199 43532520 -58340649 + MER47A DNA MER2_type 27 366 0 256 297 135 0 chr13 43532521 43532632 -58340537 + L2 LINE L2 2343 2468 -846 21 0 0 0 chr13 43532765 43532786 -58340383 + AT_rich Low_complexity Low_complexity 1 21 0 747 182 0 0 chr13 43532926 43533058 -58340111 - FLAM_C SINE Alu -1 132 1 2142 104 3 0 chr13 43533705 43534002 -58339167 - AluY SINE Alu -13 298 1 215 349 104 9 chr13 43535192 43535298 -58337871 - MIR SINE MIR -63 145 30 638 264 62 16 chr13 43535386 43535628 -58337541 + L2 LINE L2 3056 3308 -5 336 370 91 8 chr13 43536319 43536573 -58336596 + L2 LINE L2 2469 2743 -571 414 0 0 0 chr13 43537625 43537671 -58335498 + (CA)n Simple_repeat Simple_repeat 1 46 0 318 271 193 41 chr13 43539579 43539797 -58333372 - L3 LINE CR1 -8 1569 1319 203 213 0 53 chr13 43540653 43540728 -58332441 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 2779 13 0 9 chr13 43540894 43541233 -58331936 - AluYb8 SINE Alu 0 336 1 377 206 14 0 chr13 43541245 43541318 -58331851 - MER58B DNA MER1_type -3 338 265 203 189 0 0 chr13 43541818 43541855 -58331314 + A-rich Low_complexity Low_complexity 1 37 0 280 285 317 0 chr13 43542631 43542817 -58330352 + MIR SINE MIR 6 250 -12 216 0 0 0 chr13 43542835 43542859 -58330310 + (TTG)n Simple_repeat Simple_repeat 2 25 0 277 337 92 11 chr13 43544818 43545002 -58328167 + L2 LINE L2 3095 3293 -20 226 282 115 52 chr13 43546547 43546799 -58326370 + L1ME LINE L1 5343 5610 -511 22 0 0 0 chr13 43546956 43546978 -58326191 + AT_rich Low_complexity Low_complexity 1 22 0 2245 80 3 3 chr13 43547469 43547768 -58325401 + AluSq SINE Alu 1 299 -14 951 155 0 0 chr13 43548404 43548552 -58324617 - AluJb SINE Alu -7 305 158 461 171 32 82 chr13 43548552 43548710 -58324459 - L1MC5 LINE L1 -394 7567 7418 2440 75 3 0 chr13 43549706 43550011 -58323158 + AluY SINE Alu 1 306 -5 711 69 0 0 chr13 43550486 43550588 -58322581 + (TCCA)n Simple_repeat Simple_repeat 1 102 0 216 260 27 14 chr13 43550627 43550700 -58322469 + GA-rich Low_complexity Low_complexity 3 76 0 290 283 292 12 chr13 43550802 43551092 -58322077 - L2 LINE L2 -232 3081 2731 1363 235 131 12 chr13 43551135 43551539 -58321630 + LTR40a LTR ERVL 68 519 0 237 243 126 39 chr13 43551649 43551752 -58321417 - MIR SINE MIR -143 119 8 2244 95 3 23 chr13 43551823 43552127 -58321042 + AluSc SINE Alu 1 298 -11 209 174 0 43 chr13 43552178 43552224 -58320945 + (TATG)n Simple_repeat Simple_repeat 2 45 0 1302 181 0 30 chr13 43553082 43553347 -58319822 - L1MA8 LINE L1 -287 6004 5748 226 296 116 6 chr13 43553656 43553828 -58319341 - L1MEd LINE L1 -1587 4542 4352 735 176 15 15 chr13 43553869 43554005 -58319164 - AluJo SINE Alu -176 136 1 547 290 116 37 chr13 43554489 43554893 -58318276 - L1MEd LINE L1 -2579 3550 3115 764 167 6 0 chr13 43554961 43555117 -58318052 - L1MA4 LINE L1 -7 6293 6137 891 292 127 15 chr13 43555129 43555855 -58317314 - L1MEd LINE L1 -3137 2992 2186 821 189 61 0 chr13 43556325 43556489 -58316680 + MER58B DNA MER1_type 168 341 0 806 298 112 27 chr13 43556580 43557453 -58315716 - L1MEd LINE L1 -4771 1539 561 255 208 34 114 chr13 43557527 43557676 -58315493 - L1MEd LINE L1 -5903 216 80 535 271 131 27 chr13 43558068 43558289 -58314880 + MIR SINE MIR 19 262 0 43 101 0 0 chr13 43558949 43559097 -58314072 + AT_rich Low_complexity Low_complexity 1 148 0 23 0 0 0 chr13 43559734 43559757 -58313412 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 43560483 43560509 -58312660 + AT_rich Low_complexity Low_complexity 1 26 0 219 36 0 0 chr13 43560677 43560705 -58312464 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2044 89 7 14 chr13 43560708 43560990 -58312179 - AluSc SINE Alu -29 280 1 439 262 96 70 chr13 43562469 43562698 -58310471 - MIR SINE MIR -15 247 13 6942 34 2 0 chr13 43563286 43564112 -58309057 - L1PA3 LINE L1 0 6155 5328 * 12758 26 1 1 chr13 43564111 43565644 -58307525 + L1PA3 LINE L1 3820 5353 -793 669 226 142 24 chr13 43567646 43567858 -58305311 + MIR SINE MIR 24 260 -2 190 278 222 0 chr13 43567878 43567950 -58305219 - L2 LINE L2 -6 3266 3179 248 379 40 17 chr13 43567952 43568126 -58305043 - L2 LINE L2 -229 3043 2866 21 71 0 0 chr13 43568679 43568721 -58304448 + AT_rich Low_complexity Low_complexity 1 42 0 267 326 32 21 chr13 43569093 43569188 -58303981 + MIR SINE MIR 48 143 -119 477 307 127 57 chr13 43569213 43569457 -58303712 + MIR SINE MIR 2 262 0 2488 211 58 34 chr13 43569491 43570082 -58303087 - MER77 LTR ERV1 0 605 1 564 286 95 22 chr13 43570085 43570316 -58302853 - MIR SINE MIR -13 249 2 23 54 0 0 chr13 43571313 43571350 -58301819 + AT_rich Low_complexity Low_complexity 1 37 0 890 248 28 0 chr13 43571920 43572134 -58301035 + MIR SINE MIR 42 261 -1 410 257 146 18 chr13 43573452 43573623 -58299546 - L2 LINE L2 -7 3306 3114 204 40 0 0 chr13 43576646 43576671 -58296498 + (TG)n Simple_repeat Simple_repeat 2 26 0 1864 116 0 8 chr13 43577080 43577338 -58295831 + AluSx SINE Alu 5 260 -52 222 37 0 0 chr13 43577345 43577372 -58295797 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr13 43577812 43577834 -58295335 + AT_rich Low_complexity Low_complexity 1 22 0 1392 204 11 21 chr13 43579558 43579843 -58293326 + AluJo SINE Alu 1 282 -30 280 266 25 0 chr13 43579919 43579998 -58293171 + (TAG)n Simple_repeat Simple_repeat 2 82 0 963 271 57 0 chr13 43579998 43580242 -58292927 - MIR SINE MIR 0 262 5 29 70 0 0 chr13 43580437 43580494 -58292675 + AT_rich Low_complexity Low_complexity 1 57 0 2167 248 58 25 chr13 43580790 43581467 -58291702 - MER21B LTR ERV1 -152 711 13 201 295 195 21 chr13 43581497 43581687 -58291482 + L3 LINE CR1 1299 1521 -56 1597 113 16 4 chr13 43582126 43582373 -58290796 + L1PA10 LINE L1 5919 6168 0 1942 83 0 0 chr13 43582528 43582780 -58290389 + AluY SINE Alu 57 308 -3 2211 120 7 0 chr13 43583283 43583591 -58289578 - AluSg SINE Alu 0 310 1 1773 166 13 23 chr13 43585044 43585346 -58287823 + AluJo SINE Alu 2 300 -12 1057 263 175 21 chr13 43586081 43586560 -58286609 + L2 LINE L2 2234 2786 -528 13605 23 0 1 chr13 43586563 43588934 -58284235 - L1PA2 LINE L1 0 6155 3788 4059 40 0 0 chr13 43588936 43589437 -58283732 + L1PA2 LINE L1 3300 3800 -2346 703 242 263 14 chr13 43589438 43589813 -58283356 + L2 LINE L2 2779 3232 -81 1925 106 67 0 chr13 43589885 43590167 -58283002 - AluSc SINE Alu -8 301 1 272 246 0 0 chr13 43590177 43590246 -58282923 + MLT1J LTR MaLR 443 511 0 210 196 65 22 chr13 43590246 43590292 -58282877 + L2 LINE L2 3210 3257 -15 348 194 0 60 chr13 43590854 43590947 -58282222 + L1ME3A LINE L1 6079 6164 0 639 263 52 56 chr13 43591199 43591431 -58281738 - MIR SINE MIR -10 252 22 2069 148 120 5 chr13 43591572 43591956 -58281213 + MSTA LTR MaLR 1 428 0 1345 201 111 30 chr13 43592187 43592619 -58280550 + MLT1C LTR MaLR 1 467 0 41 27 0 40 chr13 43593662 43593736 -58279433 + AT_rich Low_complexity Low_complexity 1 71 0 192 135 0 0 chr13 43594135 43594172 -58278997 + (TA)n Simple_repeat Simple_repeat 1 37 0 1890 150 14 99 chr13 43594579 43595005 -58278164 - MLT1B LTR MaLR 0 390 1 460 294 71 79 chr13 43596209 43596563 -58276606 - L2 LINE L2 -916 2398 2048 224 296 0 0 chr13 43596634 43596688 -58276481 + L2 LINE L2 3217 3270 -2 21 36 0 0 chr13 43597374 43597402 -58275767 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 43598439 43598460 -58274709 + AT_rich Low_complexity Low_complexity 1 21 0 2460 77 0 0 chr13 43598706 43599016 -58274153 + AluY SINE Alu 1 310 -1 21 36 0 0 chr13 43599040 43599068 -58274101 + AT_rich Low_complexity Low_complexity 1 28 0 190 323 177 0 chr13 43600112 43600208 -58272961 - L2 LINE L2 0 3313 3201 256 333 56 40 chr13 43600569 43600767 -58272402 - L2 LINE L2 -560 2754 2554 216 275 58 75 chr13 43600798 43600918 -58272251 - L2 LINE L2 -896 2418 2301 534 229 79 24 chr13 43600954 43601180 -58271989 - MER106B DNA MER1_type 0 1059 1 270 335 149 19 chr13 43604406 43604621 -58268548 - MIR SINE MIR -9 253 11 243 192 19 0 chr13 43605221 43605273 -58267896 + (TG)n Simple_repeat Simple_repeat 1 53 0 192 170 0 0 chr13 43605289 43605342 -58267827 + (TA)n Simple_repeat Simple_repeat 2 54 0 598 197 0 24 chr13 43605440 43605567 -58267602 + FRAM SINE Alu 44 167 -9 29 78 0 0 chr13 43605713 43605777 -58267392 + AT_rich Low_complexity Low_complexity 1 64 0 4159 194 51 10 chr13 43606658 43607556 -58265613 - L1MC2 LINE L1 -15 6827 5893 612 237 111 5 chr13 43607560 43607750 -58265419 - MER34 LTR ERV1 0 542 333 842 251 57 5 chr13 43607785 43607996 -58265173 - MER34 LTR ERV1 -294 248 27 4603 259 49 25 chr13 43608002 43608915 -58264254 - L1MC2 LINE L1 -748 5896 5007 2359 82 3 10 chr13 43608915 43609219 -58263950 - AluSp SINE Alu -11 302 1 4603 259 49 25 chr13 43609219 43610526 -58262643 - L1MC2 LINE L1 -1637 5007 3442 24 32 0 0 chr13 43610932 43610963 -58262206 + AT_rich Low_complexity Low_complexity 1 31 0 282 271 129 18 chr13 43610981 43611151 -58262018 + MER117 DNA MER1_type 1 189 -8 2153 83 30 17 chr13 43611921 43612221 -58260948 - AluSq SINE Alu -9 304 1 351 316 19 39 chr13 43612374 43612529 -58260640 - MER5B DNA MER1_type -1 177 26 330 203 0 0 chr13 43614837 43614896 -58258273 - L2 LINE L2 -1 3312 3254 217 337 22 11 chr13 43615482 43615574 -58257595 + L2 LINE L2 2412 2504 -810 772 195 105 5 chr13 43615672 43615862 -58257307 + MER3 DNA MER1_type 1 209 0 205 347 116 31 chr13 43616005 43616230 -58256939 + L2 LINE L2 2835 3078 -194 24 0 0 0 chr13 43617387 43617411 -58255758 + AT_rich Low_complexity Low_complexity 1 24 0 204 125 0 0 chr13 43619228 43619260 -58253909 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr13 43619396 43619417 -58253752 + AT_rich Low_complexity Low_complexity 1 21 0 2120 122 0 3 chr13 43620344 43620639 -58252530 - AluSx SINE Alu -18 294 1 3263 112 23 19 chr13 43622245 43622726 -58250443 + MER1A DNA MER1_type 47 529 0 889 238 25 45 chr13 43623545 43623831 -58249338 - L1ME2 LINE L1 -138 6026 5747 920 230 29 47 chr13 43623862 43624246 -58248923 + MLT1C LTR MaLR 1 467 0 242 261 33 43 chr13 43624300 43624392 -58248777 - L1ME2 LINE L1 -550 5616 5526 * 247 275 202 5 chr13 43624386 43624579 -58248590 - L1ME2 LINE L1 -1092 5054 4824 2218 258 95 31 chr13 43624635 43625614 -58247555 - L1ME2 LINE L1 -1413 4733 3692 1380 295 39 5 chr13 43625705 43626265 -58246904 - L1MC2 LINE L1 -3238 3406 2828 407 277 101 21 chr13 43626281 43626332 -58246837 - L1MC2 LINE L1 -4171 2654 2608 1858 175 16 16 chr13 43626332 43626697 -58246472 + MLT1A1 LTR MaLR 1 365 0 407 277 101 21 chr13 43626697 43626833 -58246336 - L1MC2 LINE L1 -4217 2608 2452 1055 279 63 53 chr13 43626909 43627891 -58245278 - L1MC2 LINE L1 -4595 2230 1145 341 390 43 9 chr13 43628393 43628716 -58244453 - L1MC2 LINE L1 -5964 861 528 228 135 0 0 chr13 43628925 43628962 -58244207 + (TATG)n Simple_repeat Simple_repeat 3 39 0 399 192 39 85 chr13 43628962 43629092 -58244077 - L1MC4a LINE L1 -528 7280 7157 328 241 65 152 chr13 43630174 43630497 -58242672 - L2 LINE L2 0 3313 3019 473 274 78 0 chr13 43630661 43630814 -58242355 + L1MEc LINE L1 1664 1828 -4568 1324 216 101 0 chr13 43630852 43631240 -58241929 + L1MEc LINE L1 2047 2473 -3923 185 91 0 30 chr13 43632779 43632812 -58240357 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 186 103 0 0 chr13 43633675 43633704 -58239465 + (A)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr13 43633764 43633793 -58239376 + AT_rich Low_complexity Low_complexity 1 29 0 2340 100 0 0 chr13 43635717 43636027 -58237142 + AluSg SINE Alu 1 310 0 200 283 0 0 chr13 43636062 43636099 -58237070 + A-rich Low_complexity Low_complexity 1 40 -20 2274 112 0 10 chr13 43636099 43636412 -58236757 + AluSx SINE Alu 1 310 -2 200 283 0 0 chr13 43636412 43636434 -58236735 + A-rich Low_complexity Low_complexity 39 60 0 423 351 74 5 chr13 43636438 43636640 -58236529 - MIR SINE MIR 0 262 47 298 308 113 26 chr13 43636830 43637025 -58236144 - L2 LINE L2 0 3313 3102 2196 147 36 41 chr13 43637027 43637578 -58235591 + MLT2A2 LTR ERVL 1 554 0 820 292 115 7 chr13 43637580 43637977 -58235192 - L2 LINE L2 -209 3104 2664 1522 295 147 24 chr13 43638904 43639949 -58233220 + L2 LINE L2 2148 3313 0 562 130 0 0 chr13 43640116 43640208 -58232961 - AluSp/q SINE Alu -50 263 172 2047 143 107 6 chr13 43640401 43640764 -58232405 + MSTA LTR MaLR 1 400 -28 1708 153 7 7 chr13 43640764 43641046 -58232123 + AluSx SINE Alu 24 305 -7 293 296 197 30 chr13 43641277 43641510 -58231659 + L3 LINE CR1 183 454 -1123 260 335 50 43 chr13 43642074 43642235 -58230934 - L2 LINE L2 0 3272 3111 484 260 37 5 chr13 43642503 43642690 -58230479 + L1MA10 LINE L1 5981 6334 0 401 265 173 34 chr13 43642988 43643310 -58229859 + L1M4 LINE L1 5178 5565 -613 2574 48 0 3 chr13 43643310 43643620 -58229549 + AluY SINE Alu 1 309 -2 401 265 173 34 chr13 43643620 43643699 -58229470 + L1M4 LINE L1 5565 5632 -546 614 251 15 75 chr13 43643704 43643797 -58229372 - MIR SINE MIR -36 226 150 2338 155 139 5 chr13 43643797 43644242 -58228927 + MLT1D LTR MaLR 1 505 0 614 251 15 75 chr13 43644242 43644347 -58228822 - MIR SINE MIR -112 150 40 2175 101 10 16 chr13 43646338 43646644 -58226525 + AluSc SINE Alu 1 304 -5 22 0 0 0 chr13 43647753 43647775 -58225394 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 43648367 43648407 -58224762 + AT_rich Low_complexity Low_complexity 1 40 0 2118 103 0 26 chr13 43648695 43649005 -58224164 + AluSx SINE Alu 1 302 -10 259 298 83 12 chr13 43649438 43649522 -58223647 + MIR3 SINE MIR 83 172 -36 24 0 0 0 chr13 43650134 43650158 -58223011 + AT_rich Low_complexity Low_complexity 1 24 0 2088 116 10 0 chr13 43651926 43652220 -58220949 + AluSx SINE Alu 1 297 -15 1520 238 31 52 chr13 43652673 43653189 -58219980 + MLT1D LTR MaLR 1 505 0 255 333 0 0 chr13 43655408 43655465 -58217704 - MER2 DNA MER2_type -3 342 286 240 289 0 0 chr13 43655465 43655517 -58217652 + MER2 DNA MER2_type 286 337 -8 519 173 25 0 chr13 43655521 43655602 -58217567 - MER2 DNA MER2_type -261 84 2 2232 120 0 0 chr13 43655858 43656167 -58217002 + AluY SINE Alu 1 309 -2 776 239 89 81 chr13 43656242 43656611 -58216558 + L1M3e LINE L1 469 840 -6649 7517 224 59 35 chr13 43656851 43660545 -58212624 + L1M3e LINE L1 1877 5664 -1901 245 333 50 0 chr13 43661189 43661288 -58211881 + MIR SINE MIR 97 200 -62 335 248 66 16 chr13 43661868 43661989 -58211180 - MLT1I LTR MaLR -243 166 40 405 231 11 0 chr13 43663605 43663696 -58209473 - L1 LINE L1 -2295 4553 4462 5782 224 49 22 chr13 43663821 43665402 -58207767 - L1 LINE L1 -3999 2850 1227 1054 158 56 60 chr13 43665526 43665741 -58207428 + MER46A DNA MER2_type 23 236 0 313 283 73 57 chr13 43665757 43666004 -58207165 - L1 LINE L1 -1161 4985 4735 2283 103 0 25 chr13 43666048 43666367 -58206802 - AluSx SINE Alu -1 311 1 309 340 80 5 chr13 43666687 43666887 -58206282 - L2 LINE L2 -1 3312 3098 474 361 62 21 chr13 43667101 43667392 -58205777 - L2 LINE L2 -470 2844 2542 1075 292 44 35 chr13 43667432 43667887 -58205282 + L2 LINE L2 2247 2705 -609 549 314 102 12 chr13 43667898 43668143 -58205026 + L2 LINE L2 3042 3308 -5 268 252 139 17 chr13 43668294 43668409 -58204760 - L2 LINE L2 -926 2388 2260 269 316 44 29 chr13 43670923 43671059 -58202110 - MIR3 SINE MIR -17 191 54 765 207 37 159 chr13 43671311 43671582 -58201587 - MER8 DNA MER2_type 0 239 2 2394 75 0 0 chr13 43673171 43673465 -58199704 + AluY SINE Alu 1 294 -17 1110 111 64 0 chr13 43674490 43674662 -58198507 - MSTA LTR MaLR -245 183 1 250 109 0 0 chr13 43674736 43674782 -58198387 - LTR66 LTR ERVL -171 439 394 206 222 0 0 chr13 43674787 43674832 -58198337 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 2476 108 14 3 chr13 43674861 43675221 -58197948 + THE1B LTR MaLR 1 364 0 10747 96 10 57 chr13 43675221 43676880 -58196289 + THE1B-int LTR MaLR 1 1580 0 2203 110 3 3 chr13 43676880 43677189 -58195980 + THE1B LTR MaLR 1 309 -55 24 67 0 0 chr13 43677887 43677932 -58195237 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 43678006 43678027 -58195142 + AT_rich Low_complexity Low_complexity 1 21 0 2261 118 0 0 chr13 43678171 43678477 -58194692 - AluSq SINE Alu -5 308 3 1815 208 45 63 chr13 43678664 43679154 -58194015 + MLT1D LTR MaLR 25 505 0 283 247 59 35 chr13 43679232 43679317 -58193852 + MLT1L LTR MaLR 441 527 -88 361 261 57 80 chr13 43680839 43681103 -58192066 - L1MC4a LINE L1 -158 5963 5706 385 282 70 26 chr13 43681315 43681471 -58191698 - MIR3 SINE MIR -16 192 30 1826 169 0 7 chr13 43682039 43682334 -58190835 + AluJo SINE Alu 1 293 -19 462 308 143 8 chr13 43683305 43683571 -58189598 + L2 LINE L2 3012 3313 0 213 194 0 0 chr13 43685626 43685662 -58187507 + polypurine Low_complexity Low_complexity 2 37 0 915 180 0 18 chr13 43685693 43685860 -58187309 + AluSg/x SINE Alu 140 303 -9 182 189 108 0 chr13 43685990 43686027 -58187142 - L3 LINE CR1 -25 1552 1512 387 315 151 23 chr13 43686096 43686315 -58186854 - MIR SINE MIR 0 262 16 1329 192 26 58 chr13 43686554 43686866 -58186303 - AluJo SINE Alu 0 302 1 624 27 0 0 chr13 43686939 43687013 -58186156 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1626 214 132 9 chr13 43687016 43687441 -58185728 - LTR54B LTR ERV1 -21 477 1 859 254 5 19 chr13 43687618 43687827 -58185342 + MER58A DNA MER1_type 4 209 -15 181 369 82 57 chr13 43688107 43688229 -58184940 + L2 LINE L2 2619 2743 -571 27 0 0 0 chr13 43688234 43688261 -58184908 + AT_rich Low_complexity Low_complexity 1 27 0 2461 107 30 6 chr13 43689182 43689548 -58183621 + THE1C LTR MaLR 1 375 0 3161 187 79 1 chr13 43689830 43690478 -58182691 + L1MB5 LINE L1 5477 6174 0 423 273 74 0 chr13 43690927 43691048 -58182121 - L2 LINE L2 0 3313 3184 257 299 51 17 chr13 43691629 43691746 -58181423 - MIR SINE MIR -10 252 132 782 176 51 11 chr13 43692597 43692773 -58180396 - Charlie4a DNA MER1_type -6 502 320 436 353 18 40 chr13 43692831 43693106 -58180063 + LTR16B LTR ERVL 37 305 -159 1171 207 92 3 chr13 43693170 43693465 -58179704 - Charlie4a DNA MER1_type -184 324 4 21 36 0 0 chr13 43693730 43693758 -58179411 + AT_rich Low_complexity Low_complexity 1 28 0 732 172 8 0 chr13 43694128 43694250 -58178919 - FLAM_C SINE Alu -20 123 1 203 250 13 40 chr13 43694968 43695044 -58178125 - L3b LINE CR1 -355 1228 1155 289 362 9 17 chr13 43696174 43696290 -58176879 + L2 LINE L2 3194 3308 -5 1990 138 0 25 chr13 43697442 43697762 -58175407 - AluSx SINE Alu 0 312 1 1154 50 6 43 chr13 43699775 43699936 -58173233 - L1PA7 LINE L1 -2 6152 5998 26 64 0 0 chr13 43700093 43700140 -58173029 + AT_rich Low_complexity Low_complexity 1 47 0 605 339 66 61 chr13 43702025 43702536 -58170633 + L2 LINE L2 2718 3272 0 244 239 45 30 chr13 43703167 43703234 -58169935 + L2 LINE L2 3163 3230 -42 525 168 50 0 chr13 43705910 43706011 -58167158 - L1MC1 LINE L1 -6 6327 6222 227 307 0 40 chr13 43706056 43706131 -58167038 - MIR SINE MIR -79 183 112 665 209 56 56 chr13 43706710 43706906 -58166263 - MER3 DNA MER1_type -8 201 6 308 326 123 4 chr13 43706939 43707200 -58165969 + L2 LINE L2 1988 2279 -1035 411 322 78 63 chr13 43707895 43708320 -58164849 - L2 LINE L2 -592 2722 2292 348 347 87 73 chr13 43708318 43708618 -58164551 + L2 LINE L2 2964 3267 -5 * 238 380 50 0 chr13 43709864 43709985 -58163184 + L2 LINE L2 3137 3263 -9 190 289 0 77 chr13 43710153 43710205 -58162964 + L2 LINE L2 3214 3261 -11 907 70 70 8 chr13 43710381 43710510 -58162659 - MER85 DNA T2_type -2 137 1 253 200 18 0 chr13 43710583 43710638 -58162531 + MER116 DNA Mariner 25 80 0 626 253 191 48 chr13 43710785 43711141 -58162028 - L2 LINE L2 0 3313 2907 345 318 120 21 chr13 43711766 43711999 -58161170 + L1MC/D LINE L1 5558 5813 -1995 314 297 20 36 chr13 43712041 43712290 -58160879 - HAL1 LINE L1 -10 2497 2253 1881 139 30 7 chr13 43712904 43713205 -58159964 - AluSx SINE Alu -4 308 1 2079 151 0 0 chr13 43713555 43713859 -58159310 + AluSx SINE Alu 1 304 -8 303 234 72 63 chr13 43714983 43715094 -58158075 - L1MC4a LINE L1 -1711 6097 5986 246 286 34 0 chr13 43715140 43715259 -58157910 - L1ME3A LINE L1 -219 5951 5829 225 250 106 15 chr13 43715289 43715421 -58157748 - L1M4 LINE L1 -3889 2257 2114 2650 199 42 124 chr13 43715827 43716974 -58156195 - Charlie1 DNA MER1_type -386 2375 1 18206 29 0 0 chr13 43717809 43720794 -58152375 + L1PA2 LINE L1 3207 6191 0 28 0 0 0 chr13 43722542 43722570 -58150599 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr13 43722627 43722685 -58150484 + AT_rich Low_complexity Low_complexity 1 58 0 24 67 0 0 chr13 43723346 43723391 -58149778 + AT_rich Low_complexity Low_complexity 1 45 0 314 322 40 45 chr13 43723782 43723959 -58149210 - MIR SINE MIR -10 252 77 21 0 0 0 chr13 43725701 43725722 -58147447 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chr13 43726106 43726133 -58147036 + (A)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr13 43726972 43726998 -58146171 + (A)n Simple_repeat Simple_repeat 1 26 0 239 312 39 0 chr13 43727917 43727994 -58145175 - L2 LINE L2 -261 3011 2932 211 345 69 40 chr13 43728291 43728465 -58144704 - L2 LINE L2 -823 2491 2313 424 195 12 0 chr13 43728786 43728868 -58144301 - L2 LINE L2 -1 3312 3230 1444 240 128 33 chr13 43728882 43729453 -58143716 - L2 LINE L2 -830 2484 1860 2500 165 47 16 chr13 43730273 43730854 -58142315 - L1MA4A LINE L1 -23 6280 5625 277 347 71 0 chr13 43731649 43731747 -58141422 + L2 LINE L2 3191 3295 -18 28 29 0 0 chr13 43732217 43732252 -58140917 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 43732593 43732614 -58140555 + AT_rich Low_complexity Low_complexity 1 21 0 1017 254 114 17 chr13 43732747 43733168 -58140001 + LTR16B LTR ERVL 1 462 -2 674 133 0 0 chr13 43733597 43733702 -58139467 + L1MB3 LINE L1 6079 6183 0 798 229 57 24 chr13 43734265 43734475 -58138694 + LTR40a LTR ERVL 1 217 -302 517 318 31 49 chr13 43735179 43735465 -58137704 + MER89-int LTR ERV1 6205 6485 -316 * 670 258 29 52 chr13 43735346 43735619 -58137550 + HERVL40 LTR ERVL 2783 5454 -36 997 211 84 35 chr13 43735625 43735909 -58137260 + LTR40b LTR ERVL 164 461 -1 334 149 68 14 chr13 43736630 43736704 -58136465 + LTR67 LTR ERVL 477 554 -3 381 161 0 0 chr13 43736772 43736859 -58136310 + (TA)n Simple_repeat Simple_repeat 1 87 0 2135 84 3 27 chr13 43736859 43737155 -58136014 - AluY SINE Alu -22 289 1 1682 212 49 66 chr13 43738303 43738756 -58134413 + L1MB8 LINE L1 5657 6100 -78 2289 79 0 10 chr13 43738756 43739048 -58134121 - AluY SINE Alu -14 297 9 1682 212 49 66 chr13 43739048 43739126 -58134043 + L1MB8 LINE L1 6100 6178 0 328 274 7 30 chr13 43739871 43740006 -58133163 + GA-rich Low_complexity Low_complexity 1 132 0 2233 101 3 0 chr13 43740330 43740626 -58132543 - AluSx SINE Alu -15 297 1 566 220 23 23 chr13 43740815 43740947 -58132222 + MER5B DNA MER1_type 1 132 -46 2240 74 0 11 chr13 43741388 43741694 -58131475 + AluY SINE Alu 1 303 0 369 229 36 0 chr13 43742044 43742127 -58131042 - MIR SINE MIR -15 247 162 855 266 12 43 chr13 43742133 43742389 -58130780 - MIR SINE MIR -7 255 8 29 28 0 0 chr13 43742452 43742488 -58130681 + AT_rich Low_complexity Low_complexity 1 36 0 300 327 19 32 chr13 43742628 43742784 -58130385 + GA-rich Low_complexity Low_complexity 3 156 0 21 0 0 0 chr13 43743764 43743785 -58129384 + AT_rich Low_complexity Low_complexity 1 21 0 2288 96 3 0 chr13 43744100 43744403 -58128766 + AluSp SINE Alu 1 304 -9 1047 170 162 8 chr13 43744676 43744935 -58128234 - MER33 DNA MER1_type 0 324 26 24 32 0 0 chr13 43747976 43748007 -58125162 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 43748065 43748088 -58125081 + AT_rich Low_complexity Low_complexity 1 23 0 432 0 0 0 chr13 43748361 43748409 -58124760 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 1603 181 0 4 chr13 43748412 43748682 -58124487 - AluJo SINE Alu -32 280 12 246 303 42 7 chr13 43748946 43749088 -58124081 + GA-rich Low_complexity Low_complexity 5 151 0 694 224 68 49 chr13 43749725 43749930 -58123239 - MER63A DNA MER1_type 0 210 2 216 0 0 0 chr13 43750142 43750166 -58123003 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 239 288 0 0 chr13 43750416 43750482 -58122687 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2209 94 3 3 chr13 43750518 43750816 -58122353 + AluSq SINE Alu 1 298 -15 195 197 45 45 chr13 43752111 43752177 -58120992 - L3 LINE CR1 -1093 484 419 27 29 0 0 chr13 43752985 43753019 -58120150 + AT_rich Low_complexity Low_complexity 1 34 0 1631 180 14 4 chr13 43753782 43754060 -58119109 - AluJo SINE Alu -31 281 1 314 387 40 8 chr13 43754069 43754193 -58118976 - L2 LINE L2 -20 3252 3125 607 238 95 65 chr13 43754508 43754739 -58118430 + MLT1E2 LTR MaLR 17 254 -372 1733 126 11 15 chr13 43754742 43755011 -58118158 + AluSq SINE Alu 5 272 -41 458 116 14 0 chr13 43755012 43755081 -58118088 + AluJ/FRAM SINE Alu 232 301 -11 626 304 63 21 chr13 43755082 43755286 -58117883 + MLT1E2 LTR MaLR 243 412 -181 * 2024 236 46 9 chr13 43755277 43755823 -58117346 - L1M4 LINE L1 -1605 4541 3976 709 218 111 90 chr13 43755823 43756200 -58116969 - MLT1B LTR MaLR 0 390 6 993 235 50 53 chr13 43756203 43756748 -58116421 - L1M4 LINE L1 -2169 3977 3325 3012 206 100 111 chr13 43756791 43756834 -58116335 - L1MDa LINE L1 -4794 1746 1704 2170 125 0 0 chr13 43756834 43757131 -58116038 - AluSx SINE Alu -15 297 1 3012 206 100 111 chr13 43757131 43757248 -58115921 - L1MDa LINE L1 -4836 1704 1587 2395 77 3 3 chr13 43757248 43757548 -58115621 - AluSx SINE Alu -8 304 5 3012 206 100 111 chr13 43757548 43758967 -58114202 - L1MDa LINE L1 -4953 1587 17 198 312 140 46 chr13 43758973 43759258 -58113911 - L2 LINE L2 -1191 2123 1812 26 0 0 0 chr13 43759737 43759763 -58113406 + AT_rich Low_complexity Low_complexity 1 26 0 1051 64 0 0 chr13 43760458 43760583 -58112586 - AluSc SINE Alu -184 125 1 862 307 91 33 chr13 43760594 43761199 -58111970 - L2 LINE L2 -962 2352 1713 22 35 0 0 chr13 43763195 43763224 -58109945 + AT_rich Low_complexity Low_complexity 1 29 0 1417 298 138 69 chr13 43764934 43765992 -58107177 + L1MC4a LINE L1 5766 6896 -912 819 219 6 11 chr13 43765994 43766177 -58106992 + L1MB5 LINE L1 5986 6167 -7 5912 152 51 31 chr13 43766192 43768238 -58104931 + L1PB3 LINE L1 4061 6151 -3 24 32 0 0 chr13 43768238 43768269 -58104900 + AT_rich Low_complexity Low_complexity 1 31 0 504 269 101 29 chr13 43768380 43768588 -58104581 + L1ME3A LINE L1 5924 6146 -24 28 29 0 0 chr13 43770015 43770050 -58103119 + AT_rich Low_complexity Low_complexity 1 35 0 314 329 58 13 chr13 43770369 43770524 -58102645 - HAL1 LINE L1 -975 1532 1371 252 186 134 41 chr13 43770526 43770623 -58102546 - L1MEd LINE L1 -4862 1257 1152 211 172 17 17 chr13 43770905 43770963 -58102206 + T-rich Low_complexity Low_complexity 2 59 0 696 229 101 11 chr13 43771015 43771203 -58101966 - MER3 DNA MER1_type -4 205 1 192 167 0 45 chr13 43772408 43772474 -58100695 + (TA)n Simple_repeat Simple_repeat 1 63 0 1967 171 3 0 chr13 43772749 43773048 -58100121 + 7SLRNA srpRNA srpRNA 1 300 -20 210 71 0 0 chr13 43773048 43773076 -58100093 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2149 178 64 5 chr13 43773757 43774161 -58099008 + MSTA LTR MaLR 1 428 0 8923 166 25 21 chr13 43774161 43775487 -58097682 + MSTA-int LTR MaLR 1 1336 -315 2136 92 58 7 chr13 43775487 43775781 -58097388 + AluSc SINE Alu 1 309 0 8923 166 25 21 chr13 43775781 43776098 -58097071 + MSTA-int LTR MaLR 1336 1650 -1 2185 155 63 24 chr13 43776099 43776511 -58096658 + MSTA LTR MaLR 1 428 0 810 190 155 0 chr13 43776609 43776783 -58096386 + MER3 DNA MER1_type 8 208 -1 802 308 28 53 chr13 43777517 43777739 -58095430 - L2 LINE L2 -430 2884 2658 1936 152 16 34 chr13 43777739 43778121 -58095048 - THE1C LTR MaLR 0 375 1 802 308 28 53 chr13 43778121 43778405 -58094764 - L2 LINE L2 -656 2658 2391 728 67 0 0 chr13 43778446 43778536 -58094633 - AluSc SINE Alu -19 290 201 303 337 53 0 chr13 43779609 43779704 -58093465 - L2 LINE L2 0 3313 3214 14248 128 32 21 chr13 43779969 43780973 -58092196 - Tigger1 DNA MER2_type 0 2418 1426 2139 105 0 7 chr13 43780973 43781268 -58091901 + AluSq SINE Alu 1 293 -20 14248 128 32 21 chr13 43781268 43782655 -58090514 - Tigger1 DNA MER2_type -992 1426 2 431 252 94 31 chr13 43782748 43782875 -58090294 + L2 LINE L2 3179 3313 0 23 68 0 0 chr13 43783547 43783591 -58089578 + AT_rich Low_complexity Low_complexity 1 44 0 572 193 71 29 chr13 43783735 43783875 -58089294 + MER63 DNA MER1_type 1 772 -290 1853 143 7 26 chr13 43784326 43784633 -58088536 + AluJo SINE Alu 3 303 -9 395 300 71 43 chr13 43785291 43785681 -58087488 - L1MD1 LINE L1 -321 5921 5507 3900 135 33 2 chr13 43785819 43786455 -58086714 - L1PA15 LINE L1 0 6165 5510 453 84 0 0 chr13 43786555 43786626 -58086543 + Alu SINE Alu 235 305 -4 206 358 63 11 chr13 43787119 43787214 -58085955 + L2 LINE L2 3158 3257 -15 1869 127 4 0 chr13 43787215 43787475 -58085694 - AluSq SINE Alu -39 274 14 238 337 84 0 chr13 43787641 43787736 -58085433 - L2 LINE L2 -5 3308 3206 272 185 0 0 chr13 43788499 43788553 -58084616 - MER53 DNA DNA -2 187 134 564 288 56 105 chr13 43790005 43790397 -58082772 - L2 LINE L2 0 3313 2941 250 200 91 0 chr13 43790390 43790445 -58082724 - L2 LINE L2 -505 2809 2750 * 22 56 0 0 chr13 43791041 43791077 -58082092 + AT_rich Low_complexity Low_complexity 1 36 0 2009 103 61 66 chr13 43791083 43791408 -58081761 + THE1C LTR MaLR 1 325 -50 2291 103 6 0 chr13 43791408 43791719 -58081450 + AluSp SINE Alu 1 313 0 2009 103 61 66 chr13 43791719 43791770 -58081399 + THE1C LTR MaLR 325 375 0 260 261 0 0 chr13 43791909 43791978 -58081191 - L1ME LINE L1 -341 5780 5712 295 279 79 24 chr13 43792259 43792424 -58080745 - HAL1 LINE L1 -92 2415 2242 6457 58 1 4 chr13 43792658 43793486 -58079683 + L1PA7 LINE L1 5329 6154 0 757 238 72 21 chr13 43793505 43794205 -58078964 + L1ME LINE L1 4457 5233 -913 1005 248 116 47 chr13 43794238 43794662 -58078507 - LTR40b LTR ERVL -7 455 3 877 224 164 2 chr13 43794664 43795010 -58078159 + L1ME LINE L1 5237 5634 -530 1143 219 124 3 chr13 43795020 43795405 -58077764 + L1ME4a LINE L1 5500 5927 -239 1576 219 0 13 chr13 43796117 43796432 -58076737 + AluJo SINE Alu 1 311 -1 336 291 57 14 chr13 43796435 43796576 -58076593 - L2 LINE L2 -286 3027 2881 292 269 130 19 chr13 43796650 43796758 -58076411 + MER58C DNA MER1_type 12 131 -84 386 169 65 0 chr13 43796802 43796879 -58076290 + MER58C DNA MER1_type 134 215 0 905 331 37 13 chr13 43796880 43797255 -58075914 - L2 LINE L2 -507 2807 2424 1826 301 136 37 chr13 43797265 43797553 -58075616 - L2 LINE L2 -1409 1905 1647 2171 123 13 0 chr13 43797553 43797855 -58075314 + AluSq SINE Alu 1 306 -7 1826 301 136 37 chr13 43797855 43798747 -58074422 - L2 LINE L2 -1667 1647 608 296 324 49 0 chr13 43798768 43798870 -58074299 + L2 LINE L2 3125 3231 -41 2034 88 4 0 chr13 43798943 43799205 -58073964 + AluSx SINE Alu 50 312 0 25 31 0 0 chr13 43799205 43799237 -58073932 + AT_rich Low_complexity Low_complexity 1 32 0 484 214 14 14 chr13 43799860 43800000 -58073169 - L1 LINE L1 -1648 4498 4359 386 251 103 23 chr13 43800269 43800444 -58072725 + MLT1K LTR MaLR 399 587 -1 236 304 168 19 chr13 43801256 43801417 -58071752 + L2 LINE L2 1233 1417 -1897 253 0 54 0 chr13 43801540 43801577 -58071592 + (CTAAT)n Simple_repeat Simple_repeat 3 41 0 205 162 0 0 chr13 43802554 43802591 -58070578 - MIR SINE MIR -69 193 157 311 191 209 17 chr13 43802609 43802724 -58070445 + L1ME4a LINE L1 5969 6105 -16 2076 132 0 0 chr13 43802751 43803047 -58070122 + AluSx SINE Alu 1 296 -16 426 321 122 25 chr13 43804529 43805053 -58068116 - L1MC4a LINE L1 -1976 5832 5258 35 78 0 0 chr13 43808408 43808485 -58064684 + AT_rich Low_complexity Low_complexity 1 77 0 456 250 99 12 chr13 43808641 43808813 -58064356 + MLT1K LTR MaLR 364 550 -38 202 214 0 43 chr13 43811869 43811939 -58061230 + A-rich Low_complexity Low_complexity 3 69 0 311 296 93 12 chr13 43811978 43812150 -58061019 + HAL1b LINE L1 59 244 -1104 359 270 63 13 chr13 43812313 43812472 -58060697 + HAL1b LINE L1 468 634 -714 956 202 195 23 chr13 43812704 43813140 -58060029 + L1MC5 LINE L1 6650 7160 -801 547 247 70 6 chr13 43813159 43813317 -58059852 + L1MC5 LINE L1 7256 7423 -538 808 191 40 35 chr13 43813450 43813623 -58059546 + AluJo SINE Alu 104 277 -35 423 56 0 0 chr13 43813623 43813677 -58059492 + (TGGA)n Simple_repeat Simple_repeat 4 57 0 432 37 0 0 chr13 43813707 43813761 -58059408 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 269 228 167 26 chr13 43813900 43814014 -58059155 + L1ME3A LINE L1 6010 6139 -31 273 243 261 0 chr13 43814055 43814166 -58059003 + MIR3 SINE MIR 48 187 -21 282 238 36 0 chr13 43814779 43814863 -58058306 - Tigger1 DNA MER2_type -1350 1068 982 494 299 28 23 chr13 43815135 43815312 -58057857 - MER5B DNA MER1_type 0 178 1 1910 154 51 12 chr13 43816609 43816940 -58056229 + MER2 DNA MER2_type 1 344 0 203 128 0 51 chr13 43817120 43817159 -58056010 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2040 128 0 0 chr13 43818350 43818632 -58054537 - AluSx SINE Alu -30 282 1 32 67 0 0 chr13 43819144 43819204 -58053965 + AT_rich Low_complexity Low_complexity 1 60 0 1583 143 42 0 chr13 43821060 43821298 -58051871 - AluJb SINE Alu -64 248 1 1456 192 11 4 chr13 43821543 43821814 -58051355 - AluJo SINE Alu -2 310 38 334 315 68 6 chr13 43821826 43821980 -58051189 - MIR SINE MIR -63 145 32 2521 37 3 0 chr13 43822081 43822377 -58050792 + AluY SINE Alu 1 297 -14 310 200 75 12 chr13 43824719 43824799 -58048370 + MER20B DNA MER1_type 37 121 -662 1095 204 146 46 chr13 43824920 43825297 -58047872 - MER66A LTR ERV1 0 478 97 21 0 0 0 chr13 43825327 43825348 -58047821 + AT_rich Low_complexity Low_complexity 1 21 0 796 267 133 29 chr13 43825448 43825901 -58047268 + MER20B DNA MER1_type 269 768 -15 2735 157 39 64 chr13 43826190 43826756 -58046413 + MLT2B3 LTR ERVL 1 552 -2 2544 153 16 12 chr13 43826910 43827340 -58045829 + MSTB1 LTR MaLR 1 432 0 222 268 0 18 chr13 43827485 43827541 -58045628 + GA-rich Low_complexity Low_complexity 2 56 0 413 286 130 7 chr13 43827870 43828024 -58045145 - LTR16A1 LTR ERVL 0 457 285 606 214 16 8 chr13 43828110 43828236 -58044933 - LTR16A1 LTR ERVL -330 127 1 201 161 32 32 chr13 43828281 43828343 -58044826 + (AATAG)n Simple_repeat Simple_repeat 4 65 0 1110 150 60 0 chr13 43828883 43829083 -58044086 - Tigger5 DNA MER2_type 0 2323 2112 1333 216 63 11 chr13 43829083 43829370 -58043799 - Tigger5 DNA MER2_type -2016 307 6 603 0 0 0 chr13 43829620 43829687 -58043482 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 514 130 83 9 chr13 43829688 43829796 -58043373 + L1MD3 LINE L1 6901 7016 -979 273 189 19 0 chr13 43829788 43829841 -58043328 - L1MD3 LINE L1 -726 7269 7216 * 2549 201 51 14 chr13 43829848 43830414 -58042755 + L1MD3 LINE L1 7408 7994 -1 318 268 163 0 chr13 43830821 43830944 -58042225 - MIR SINE MIR -32 230 88 1228 99 21 21 chr13 43831156 43831348 -58041821 - MER30 DNA MER1_type -38 192 1 271 284 65 30 chr13 43831358 43831590 -58041579 + L2 LINE L2 733 972 -2342 254 350 94 26 chr13 43831843 43832109 -58041060 + L2 LINE L2 1525 1808 -1506 193 361 0 0 chr13 43832089 43832161 -58041008 + L2 LINE L2 3237 3308 -5 * 330 190 116 58 chr13 43832999 43833120 -58040049 + L3 LINE CR1 640 767 -810 333 0 0 0 chr13 43834279 43834316 -58038853 + (CA)n Simple_repeat Simple_repeat 1 37 0 2360 69 0 28 chr13 43834530 43834850 -58038319 + AluY SINE Alu 1 311 0 291 282 123 44 chr13 43835913 43836140 -58037029 + L1ME LINE L1 4741 4985 -1161 642 256 61 35 chr13 43836149 43836615 -58036554 + L1ME LINE L1 5030 5508 -658 * 1204 255 86 0 chr13 43836607 43836956 -58036213 + L1MC4 LINE L1 7524 7902 -140 2161 125 10 0 chr13 43838055 43838358 -58034811 + AluSx SINE Alu 1 306 -6 672 154 51 0 chr13 43838977 43839094 -58034075 + MLT1E2 LTR MaLR 504 626 0 21 0 0 0 chr13 43840576 43840597 -58032572 + AT_rich Low_complexity Low_complexity 1 21 0 1677 135 71 28 chr13 43841182 43841464 -58031705 + MER1B DNA MER1_type 46 339 0 25 0 0 0 chr13 43842048 43842073 -58031096 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr13 43843051 43843078 -58030091 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 324 0 0 0 chr13 43843077 43843113 -58030056 + (CA)n Simple_repeat Simple_repeat 1 36 0 403 326 56 22 chr13 43845423 43845601 -58027568 + MIR SINE MIR 32 215 -47 999 233 97 26 chr13 43845619 43845928 -58027241 - MER90 LTR ERV1 -27 548 218 1336 185 161 48 chr13 43845946 43846362 -58026807 - LTR54B LTR ERV1 -35 463 1 1183 213 24 8 chr13 43846368 43846617 -58026552 - MER90 LTR ERV1 -361 253 1 444 318 29 18 chr13 43847089 43847335 -58025834 + L1M4 LINE L1 5433 5692 -492 3981 157 70 85 chr13 43847371 43848285 -58024884 + MER21A LTR ERV1 13 914 -17 2278 57 17 20 chr13 43848285 43848585 -58024584 - AluSc SINE Alu -10 299 1 3981 157 70 85 chr13 43848585 43848603 -58024566 + MER21A LTR ERV1 914 931 0 204 211 35 18 chr13 43848792 43848849 -58024320 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1092 153 16 5 chr13 43849862 43850051 -58023118 - MER20B DNA MER1_type -1 218 28 1462 175 94 29 chr13 43850052 43850222 -58022947 - L1M4 LINE L1 -377 5807 5649 1663 160 100 62 chr13 43850222 43850519 -58022650 - MER31B LTR ERV1 0 466 145 2252 119 0 6 chr13 43850519 43850830 -58022339 + AluSx SINE Alu 1 309 -3 1663 160 100 62 chr13 43850830 43850981 -58022188 - MER31B LTR ERV1 -321 145 1 1462 175 94 29 chr13 43850981 43851152 -58022017 - L1M4 LINE L1 -535 5649 5444 875 229 0 6 chr13 43851161 43851340 -58021829 + MER58A DNA MER1_type 47 224 0 29 0 0 0 chr13 43851646 43851675 -58021494 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 43855329 43855368 -58017801 + AT_rich Low_complexity Low_complexity 1 39 0 899 200 100 5 chr13 43855709 43855899 -58017270 - AluJb SINE Alu -19 293 86 225 300 283 17 chr13 43857181 43857418 -58015751 - L2 LINE L2 -1 3271 2972 26 0 0 0 chr13 43857612 43857638 -58015531 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 43857900 43857925 -58015244 + AT_rich Low_complexity Low_complexity 1 25 0 1205 170 10 0 chr13 43858492 43858686 -58014483 - MER7A DNA MER2_type 0 336 141 735 188 8 0 chr13 43858767 43858895 -58014274 - MLT1A1 LTR MaLR -162 203 75 825 161 35 0 chr13 43859125 43859268 -58013901 - MER7A DNA MER2_type -198 148 3 378 206 129 52 chr13 43860841 43860996 -58012173 + MER106B DNA MER1_type 40 1029 -30 1929 106 3 38 chr13 43860999 43861320 -58011849 - AluSx SINE Alu 0 311 1 480 273 83 9 chr13 43861486 43861702 -58011467 + L1ME4a LINE L1 5551 5782 -339 329 255 39 10 chr13 43861719 43861821 -58011348 + L1ME4a LINE L1 5840 5944 -177 182 256 147 31 chr13 43862586 43862715 -58010454 - L2 LINE L2 -64 3249 3106 723 295 100 47 chr13 43862874 43863367 -58009802 - L2 LINE L2 0 3313 2766 1671 147 39 39 chr13 43863982 43864294 -58008875 - AluJo SINE Alu 0 312 1 489 299 51 6 chr13 43864523 43864700 -58008469 + MIR SINE MIR 2 186 -76 500 279 34 45 chr13 43865390 43865569 -58007600 + MER5B DNA MER1_type 1 177 -1 219 253 222 20 chr13 43866304 43866403 -58006766 - MIR SINE MIR -85 177 59 2303 59 17 10 chr13 43866609 43866897 -58006272 + AluY SINE Alu 3 292 -19 491 350 105 43 chr13 43869021 43869553 -58003616 - L2 LINE L2 -535 2779 2215 984 181 16 0 chr13 43869553 43869746 -58003423 - MER3 DNA MER1_type 0 209 14 253 127 0 19 chr13 43869978 43870037 -58003132 + Alu SINE Alu 254 290 -12 1761 174 6 22 chr13 43870705 43871022 -58002147 + AluJb SINE Alu 1 312 0 494 133 33 11 chr13 43871023 43871113 -58002056 + MER41B LTR ERV1 458 549 -86 1859 164 0 10 chr13 43871262 43871561 -58001608 - AluJb SINE Alu -16 296 1 374 299 153 0 chr13 43871718 43871855 -58001314 + MIR SINE MIR 104 261 -1 506 193 57 43 chr13 43872461 43872601 -58000568 - MIR SINE MIR -40 222 81 23 0 0 0 chr13 43873433 43873456 -57999713 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 43873463 43873515 -57999654 + AT_rich Low_complexity Low_complexity 1 52 0 189 186 51 51 chr13 43874876 43874935 -57998234 - MIR SINE MIR -111 151 93 513 194 48 16 chr13 43875260 43875384 -57997785 - MIR SINE MIR -117 145 18 896 199 101 11 chr13 43876988 43877319 -57995850 - MLT1D LTR MaLR -8 497 83 1086 171 76 19 chr13 43877328 43877693 -57995476 - LTR48 LTR ERV1 -74 713 135 298 244 174 17 chr13 43877662 43877777 -57995392 - MER39 LTR ERV1 -574 133 1 * 286 273 111 62 chr13 43877796 43877926 -57995243 - MLT1L LTR MaLR -28 587 465 198 0 0 0 chr13 43877926 43877948 -57995221 + (TA)n Simple_repeat Simple_repeat 2 23 0 2211 109 0 10 chr13 43877948 43878252 -57994917 - AluSx SINE Alu -11 301 1 286 273 111 62 chr13 43878252 43878409 -57994760 - MLT1L LTR MaLR -149 466 285 2357 241 45 34 chr13 43878410 43879212 -57993957 - L1ME LINE L1 -5182 888 78 271 250 52 21 chr13 43879277 43879373 -57993796 - MLT1L LTR MaLR -326 289 191 234 0 0 0 chr13 43879914 43879940 -57993229 + (A)n Simple_repeat Simple_repeat 1 26 0 463 208 21 21 chr13 43879949 43880045 -57993124 - MLT1D LTR MaLR -409 96 1 2219 126 7 0 chr13 43880351 43880661 -57992508 + AluSx SINE Alu 1 312 0 869 274 20 0 chr13 43880666 43880863 -57992306 + MIR SINE MIR 30 230 -32 2501 62 3 0 chr13 43880951 43881258 -57991911 + AluY SINE Alu 1 308 -3 318 294 172 37 chr13 43882546 43882709 -57990460 + L1MEd LINE L1 562 746 -5373 331 266 71 24 chr13 43882712 43882964 -57990205 + L1MEd LINE L1 770 1033 -5086 26 0 0 0 chr13 43883457 43883483 -57989686 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 43883745 43883770 -57989399 + AT_rich Low_complexity Low_complexity 1 25 0 483 370 74 37 chr13 43883845 43884169 -57989000 - L2 LINE L2 0 3272 2937 328 337 163 5 chr13 43884629 43884831 -57988338 + L2 LINE L2 171 404 -2910 330 357 0 26 chr13 43884851 43885005 -57988164 + L2 LINE L2 530 679 -2635 880 213 138 79 chr13 43885017 43885445 -57987724 + Charlie4a DNA MER1_type 1 453 -55 * 1059 227 151 10 chr13 43885443 43885734 -57987435 - MLT1F LTR MaLR -5 537 206 259 307 0 0 chr13 43886473 43886548 -57986621 - L2 LINE L2 0 3313 3239 1660 224 59 55 chr13 43886559 43886624 -57986545 - MLT1F LTR MaLR -7 535 472 2668 32 3 3 chr13 43886624 43886934 -57986235 - AluYa5 SINE Alu -1 310 1 1660 224 59 55 chr13 43886934 43887332 -57985837 - MLT1F LTR MaLR -70 472 80 355 297 23 59 chr13 43887335 43887554 -57985615 - L2 LINE L2 -64 3249 3039 239 300 80 40 chr13 43887628 43887728 -57985441 - MIR SINE MIR -145 117 14 21 36 0 0 chr13 43888171 43888199 -57984970 + AT_rich Low_complexity Low_complexity 1 28 0 207 255 0 0 chr13 43888954 43889005 -57984164 + CT-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr13 43889242 43889263 -57983906 + AT_rich Low_complexity Low_complexity 1 21 0 266 300 0 0 chr13 43889477 43889537 -57983632 + L2 LINE L2 3200 3259 -13 644 204 23 122 chr13 43890261 43890482 -57982687 - L1MEc LINE L1 -4612 1784 1586 2423 175 39 25 chr13 43890483 43890992 -57982177 + Tigger2 DNA MER2_type 1 516 -2202 342 303 0 0 chr13 43891093 43891189 -57981980 - MIR SINE MIR -64 144 54 1543 181 38 44 chr13 43891345 43891616 -57981553 - L1MB8 LINE L1 -89 6089 5819 1849 166 0 22 chr13 43891616 43891929 -57981240 - AluJo SINE Alu -1 311 6 1543 181 38 44 chr13 43891929 43892022 -57981147 - L1MB8 LINE L1 -359 5819 5727 317 318 95 24 chr13 43892322 43892448 -57980721 + L2 LINE L2 3137 3271 -1 254 242 111 88 chr13 43892903 43893066 -57980103 + MIR SINE MIR 17 181 -81 397 239 18 127 chr13 43894084 43894368 -57978801 + MER112 DNA MER1_type 1 253 -3 310 253 27 0 chr13 43894456 43894531 -57978638 + MIR SINE MIR 48 124 -138 3580 106 15 11 chr13 43894634 43895174 -57977995 + L1PA13 LINE L1 5620 6161 -2 937 208 101 40 chr13 43895175 43895651 -57977518 - L1ME1 LINE L1 -9 6157 5566 1594 225 156 57 chr13 43895705 43896568 -57976601 - L1ME1 LINE L1 -2663 3483 2535 32 67 0 0 chr13 43896852 43896912 -57976257 + AT_rich Low_complexity Low_complexity 1 60 0 528 254 275 39 chr13 43896917 43897303 -57975866 - MLT1F LTR MaLR -65 477 1 264 220 120 50 chr13 43897392 43897492 -57975677 - HAL1b LINE L1 -474 874 768 556 115 35 0 chr13 43897950 43898037 -57975132 - HY4 scRNA scRNA -3 90 1 1402 256 74 56 chr13 43898164 43898731 -57974438 - MLT1E2 LTR MaLR -47 579 3 180 0 0 0 chr13 43900540 43900560 -57972609 + (A)n Simple_repeat Simple_repeat 1 20 0 2571 27 0 17 chr13 43900722 43901021 -57972148 + AluY SINE Alu 2 295 -16 1898 121 71 0 chr13 43901810 43902091 -57971078 - AluSx SINE Alu -11 301 1 391 295 35 35 chr13 43902222 43902395 -57970774 - MER5A DNA MER1_type -15 174 2 273 119 0 0 chr13 43902822 43902864 -57970305 + (GGAGAA)n Simple_repeat Simple_repeat 4 45 0 1852 112 112 7 chr13 43904591 43904869 -57968300 + AluSg1 SINE Alu 1 307 -2 220 231 11 77 chr13 43905277 43905368 -57967801 + GA-rich Low_complexity Low_complexity 2 86 0 576 282 42 7 chr13 43905391 43905533 -57967636 + MER45A DNA AcHobo 1 147 -31 307 274 11 0 chr13 43905604 43905699 -57967470 + MLT1K LTR MaLR 493 588 0 46 0 0 0 chr13 43905939 43905985 -57967184 + AT_rich Low_complexity Low_complexity 1 46 0 225 152 13 25 chr13 43905996 43906075 -57967094 + (TA)n Simple_repeat Simple_repeat 2 79 0 201 241 0 0 chr13 43906154 43906208 -57966961 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 1592 194 3 10 chr13 43906208 43906496 -57966673 - AluJo SINE Alu -26 286 1 1932 117 0 0 chr13 43906563 43906828 -57966341 + AluSg SINE Alu 42 306 -4 1652 189 3 3 chr13 43907418 43907709 -57965460 + MLT1A1 LTR MaLR 75 365 0 2909 9 0 0 chr13 43908455 43908773 -57964396 - AluYb8 SINE Alu 0 318 1 1392 139 26 134 chr13 43909024 43909413 -57963756 + MER7A DNA MER2_type 2 346 0 518 336 14 5 chr13 43910097 43910305 -57962864 + LTR33 LTR ERVL 1 210 -311 805 231 39 0 chr13 43910317 43910520 -57962649 + MER106A DNA MER1_type 6 216 -20 21 36 0 0 chr13 43911007 43911035 -57962134 + AT_rich Low_complexity Low_complexity 1 28 0 1831 155 0 36 chr13 43911113 43911417 -57961752 + AluJo SINE Alu 6 298 -14 2120 115 3 14 chr13 43911446 43911742 -57961427 - AluSx SINE Alu -19 293 1 351 65 0 0 chr13 43913559 43913605 -57959564 + (CA)n Simple_repeat Simple_repeat 2 47 0 1005 148 65 17 chr13 43913642 43913752 -57959417 + L1MA9 LINE L1 6050 6153 -159 327 25 0 0 chr13 43913752 43913792 -57959377 + (CA)n Simple_repeat Simple_repeat 1 40 0 1005 148 65 17 chr13 43913792 43913911 -57959258 + L1MA9 LINE L1 6153 6290 -22 947 158 7 13 chr13 43914930 43915082 -57958087 + FRAM SINE Alu 1 150 -26 389 333 46 47 chr13 43915092 43915340 -57957829 + L1ME4a LINE L1 5313 5559 -562 816 166 0 0 chr13 43915396 43915553 -57957616 - L1 LINE L1 -3137 3009 2853 225 237 102 0 chr13 43915553 43915612 -57957557 - Tigger1 DNA MER2_type 0 2418 2354 10271 108 13 15 chr13 43915626 43916355 -57956814 - Tigger1 DNA MER2_type -307 2111 1382 2285 101 0 3 chr13 43916355 43916661 -57956508 + AluSc SINE Alu 1 305 -4 10271 108 13 15 chr13 43916661 43917568 -57955601 - Tigger1 DNA MER2_type -1036 1382 479 189 0 0 0 chr13 43917572 43917593 -57955576 + (T)n Simple_repeat Simple_repeat 1 21 0 791 214 14 0 chr13 43917611 43917756 -57955413 - AluJo SINE Alu -83 229 83 2733 141 16 40 chr13 43917756 43918261 -57954908 - Tigger1 DNA MER2_type -1925 493 1 232 177 48 0 chr13 43918262 43918324 -57954845 - L1 LINE L1 -3293 2853 2789 458 133 44 0 chr13 43918329 43918419 -57954750 + L1MA5 LINE L1 6202 6295 -5 329 344 5 5 chr13 43918499 43918688 -57954481 + L1ME4a LINE L1 5631 5819 -343 2364 106 3 0 chr13 43918868 43919171 -57953998 - AluSx SINE Alu -8 304 1 2523 186 10 29 chr13 43919562 43920077 -57953092 - MLT1D LTR MaLR 0 505 1 336 304 49 52 chr13 43920598 43920725 -57952444 + L1ME4a LINE L1 5835 5961 -160 770 206 0 0 chr13 43920725 43920856 -57952313 - FLAM_A SINE Alu -2 131 1 336 304 49 52 chr13 43920856 43921014 -57952155 + L1ME4a LINE L1 5961 6119 -2 381 260 94 0 chr13 43921125 43921221 -57951948 + MIR SINE MIR 49 153 -109 182 262 82 0 chr13 43921250 43921311 -57951858 - MIR SINE MIR -54 208 143 2212 118 3 9 chr13 43921856 43922171 -57950998 + AluSp SINE Alu 1 313 0 978 189 49 70 chr13 43922277 43922562 -57950607 - MER46C DNA MER2_type -10 328 50 1756 169 25 0 chr13 43923166 43923444 -57949725 + AluJb SINE Alu 1 285 -27 1130 154 4 30 chr13 43923704 43923938 -57949231 + SVA Other Other 450 677 -709 335 282 153 15 chr13 43924050 43924181 -57948988 - MIR SINE MIR -78 184 36 22 0 0 0 chr13 43925190 43925212 -57947957 + AT_rich Low_complexity Low_complexity 1 22 0 2011 127 0 39 chr13 43925330 43925637 -57947532 - AluSx SINE Alu -17 295 1 330 289 27 13 chr13 43925762 43925945 -57947224 + L1P5 LINE L1 5271 5457 -699 6517 186 52 43 chr13 43925971 43926223 -57946946 + L1MB7 LINE L1 3539 3787 -2397 1869 174 4 0 chr13 43926223 43926548 -57946621 + AluJo SINE Alu 1 326 0 6517 186 52 43 chr13 43926548 43926623 -57946546 + L1MB7 LINE L1 3787 3860 -2324 1928 137 0 78 chr13 43926623 43926945 -57946224 + AluSx SINE Alu 1 297 -15 213 108 0 0 chr13 43926945 43926982 -57946187 + (CA)n Simple_repeat Simple_repeat 2 38 0 6517 186 52 43 chr13 43926982 43929115 -57944054 + L1MB7 LINE L1 3859 6029 -155 34 72 0 0 chr13 43929473 43929542 -57943627 + AT_rich Low_complexity Low_complexity 1 69 0 24 32 0 0 chr13 43929694 43929725 -57943444 + AT_rich Low_complexity Low_complexity 1 31 0 2086 109 3 3 chr13 43930163 43930448 -57942721 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr13 43930448 43930486 -57942683 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 780 271 36 15 chr13 43930497 43930829 -57942340 - L1ME3 LINE L1 -14 6148 5810 201 167 0 0 chr13 43931497 43931533 -57941636 + (TAA)n Simple_repeat Simple_repeat 2 37 0 301 283 71 0 chr13 43931885 43931984 -57941185 + MIR3 SINE MIR 66 171 -37 45 19 0 0 chr13 43931987 43932039 -57941130 + AT_rich Low_complexity Low_complexity 1 52 0 184 353 0 0 chr13 43933226 43933277 -57939892 + L2 LINE L2 3251 3301 -12 257 302 73 10 chr13 43933864 43933960 -57939209 + L2 LINE L2 3191 3292 -21 344 346 103 22 chr13 43933971 43934107 -57939062 - L2 LINE L2 -9 3263 3117 1450 172 6 83 chr13 43934126 43934440 -57938729 - AluJo SINE Alu -22 290 1 2361 204 94 25 chr13 43935315 43935993 -57937176 - MER50 LTR ERV1 0 734 10 336 24 0 0 chr13 43936456 43936497 -57936672 + (TG)n Simple_repeat Simple_repeat 2 42 0 242 274 0 0 chr13 43936618 43936669 -57936500 + polypurine Low_complexity Low_complexity 3 53 0 228 86 0 0 chr13 43936797 43936832 -57936337 + (CAA)n Simple_repeat Simple_repeat 2 36 0 537 282 30 64 chr13 43937114 43937236 -57935933 + MIR SINE MIR 1 117 -145 2039 112 7 7 chr13 43937236 43937599 -57935570 - AluSp SINE Alu 0 363 1 537 282 30 64 chr13 43937599 43937676 -57935493 + MIR SINE MIR 117 195 -67 183 217 0 87 chr13 43937848 43937917 -57935252 + L3 LINE CR1 826 888 -689 2314 181 131 7 chr13 43939446 43940009 -57933160 + LTR28 LTR ERV1 1 1274 -421 1522 199 87 5 chr13 43940725 43940797 -57932372 - MER63B DNA MER1_type -626 436 371 388 46 231 0 chr13 43940797 43940862 -57932307 - MADE1 DNA Mariner 0 80 1 1522 199 87 5 chr13 43940862 43941192 -57931977 - MER63B DNA MER1_type -691 371 1 297 89 0 0 chr13 43941995 43942040 -57931129 + (TG)n Simple_repeat Simple_repeat 2 46 0 508 163 22 15 chr13 43942052 43942187 -57930982 + MER96B DNA MER1_type? 46 181 -236 338 320 202 37 chr13 43942248 43942579 -57930590 + L2 LINE L2 1565 1840 -1474 1921 140 4 4 chr13 43942579 43942858 -57930311 - AluSx SINE Alu -33 279 1 338 320 202 37 chr13 43942858 43943198 -57929971 + L2 LINE L2 1840 2347 -967 595 283 172 32 chr13 43943482 43943888 -57929281 + L2 LINE L2 2851 3313 0 192 323 0 0 chr13 43943949 43944011 -57929158 - L2 LINE L2 -2 3270 3209 * 247 384 32 11 chr13 43944005 43944190 -57928979 + L2 LINE L2 2566 2754 -560 253 342 33 86 chr13 43944277 43944429 -57928740 + L2 LINE L2 3127 3270 -2 195 263 62 38 chr13 43944679 43944759 -57928410 - L2 LINE L2 -55 3258 3177 227 279 23 93 chr13 43945322 43945451 -57927718 - MIR SINE MIR -36 226 107 2463 204 64 97 chr13 43945471 43946570 -57926599 - L1MC4a LINE L1 -821 6987 5925 1978 160 16 0 chr13 43946587 43946894 -57926275 - AluJb SINE Alu 0 312 1 2413 72 7 10 chr13 43947178 43947482 -57925687 + AluSp SINE Alu 1 303 -10 471 277 57 7 chr13 43948344 43948485 -57924684 + L2 LINE L2 3119 3266 -6 1904 46 13 0 chr13 43950183 43950422 -57922747 + L1PA5 LINE L1 5909 6150 -4 1600 161 63 32 chr13 43950536 43950836 -57922333 - MER46B DNA MER2_type -2497 234 45 2235 122 0 0 chr13 43950836 43951139 -57922030 - AluSq SINE Alu -10 303 1 1600 161 63 32 chr13 43951139 43951186 -57921983 - MER46B DNA MER2_type -2686 45 1 270 309 37 12 chr13 43951337 43951418 -57921751 + MIR SINE MIR 17 99 -109 371 316 70 29 chr13 43951751 43951922 -57921247 + MER5B DNA MER1_type 1 178 0 374 352 28 0 chr13 43951926 43952068 -57921101 - L2 LINE L2 -550 2764 2619 642 281 41 44 chr13 43952074 43952320 -57920849 + L1ME3A LINE L1 5611 5856 -314 2306 180 46 37 chr13 43952320 43952864 -57920305 - MER44D DNA MER2_type 0 605 2 642 281 41 44 chr13 43952864 43952910 -57920259 + L1ME3A LINE L1 5856 5901 -269 1617 160 50 114 chr13 43952910 43953385 -57919784 + MER65A LTR ERV1 1 445 0 642 281 41 44 chr13 43953385 43953433 -57919736 + L1ME3A LINE L1 5901 5951 -219 906 244 70 79 chr13 43953639 43954176 -57918993 + MLT1F LTR MaLR 3 538 -11 714 204 6 32 chr13 43954261 43954418 -57918751 + MIR SINE MIR 35 187 -75 321 241 23 0 chr13 43955303 43955390 -57917779 + L3b LINE CR1 1277 1365 -218 182 196 36 71 chr13 43955372 43955428 -57917741 + MIR3 SINE MIR 144 197 -11 * 2319 112 3 0 chr13 43955937 43956249 -57916920 + AluSq SINE Alu 1 313 0 1475 227 152 22 chr13 43956289 43956875 -57916294 - L1MC4 LINE L1 -142 7900 7239 1633 178 63 0 chr13 43956877 43957209 -57915960 - L1MC4 LINE L1 -970 7072 6720 487 242 28 39 chr13 43957650 43957828 -57915341 + MER5B DNA MER1_type 2 177 -1 575 294 21 11 chr13 43958257 43958444 -57914725 + MIR SINE MIR 72 260 -2 873 256 121 48 chr13 43959706 43960206 -57912963 - MLT1H LTR MaLR -15 580 40 521 209 43 9 chr13 43962428 43962543 -57910626 + MLT1J2 LTR MaLR 63 181 -269 413 273 108 0 chr13 43962597 43962736 -57910433 + MLT1J2 LTR MaLR 295 448 -2 348 242 119 68 chr13 43962740 43962959 -57910210 - HAL1 LINE L1 -768 1739 1510 * 835 248 103 31 chr13 43962958 43963406 -57909763 - HAL1 LINE L1 -1230 1277 798 1515 276 88 35 chr13 43963473 43964340 -57908829 - Charlie7 DNA MER1_type -1595 1017 105 42338 36 1 1 chr13 43964344 43970500 -57902669 - L1PA3 LINE L1 -1 6154 1 340 291 59 32 chr13 43970614 43970741 -57902428 + MER5A DNA MER1_type 1 116 -62 303 267 19 93 chr13 43970993 43971154 -57902015 + L2 LINE L2 2908 3056 -216 258 286 0 29 chr13 43971318 43971388 -57901781 + L2 LINE L2 3205 3272 0 2316 126 0 0 chr13 43971396 43971706 -57901463 + AluSx SINE Alu 1 310 -2 6571 75 14 0 chr13 43971912 43971924 -57901245 + L1PA6 LINE L1 4923 4933 -1221 2193 105 0 10 chr13 43971924 43972220 -57900949 + AluSc SINE Alu 1 293 -16 6571 75 14 0 chr13 43972220 43973412 -57899757 + L1PA6 LINE L1 4933 6136 -18 918 185 51 9 chr13 43973461 43973726 -57899443 - L1MD1 LINE L1 -291 6345 6138 30 97 0 0 chr13 43973890 43973983 -57899186 + GC_rich Low_complexity Low_complexity 1 93 0 264 198 20 30 chr13 43973983 43974084 -57899085 + G-rich Low_complexity Low_complexity 3 102 0 540 45 0 0 chr13 43974106 43974173 -57898996 + (TTTC)n Simple_repeat Simple_repeat 1 67 0 5037 227 55 24 chr13 43974176 43974907 -57898262 - L1MD1 LINE L1 -743 5797 5090 2137 140 119 13 chr13 43974907 43975293 -57897876 - MSTA LTR MaLR -1 427 1 5037 227 55 24 chr13 43975293 43976666 -57896503 - L1MD1 LINE L1 -1450 5090 3797 1797 139 48 31 chr13 43976679 43977031 -57896138 + MER46B DNA MER2_type 2 234 -2 343 267 19 9 chr13 43977032 43977137 -57896032 - L1MD1 LINE L1 -2795 3745 3640 1844 110 0 0 chr13 43977143 43977415 -57895754 + L1P3 LINE L1 404 675 -5786 1059 234 19 0 chr13 43977413 43977734 -57895435 - L1MD1 LINE L1 -2906 3634 3308 * 2961 209 102 171 chr13 43977740 43978177 -57894992 - L1MD1 LINE L1 -4711 1829 1363 2248 90 10 13 chr13 43978177 43978488 -57894681 - AluSg SINE Alu 0 310 1 2961 209 102 171 chr13 43978488 43978813 -57894356 - L1MD1 LINE L1 -5177 1363 1017 1093 196 18 32 chr13 43978813 43979032 -57894137 - AluJo SINE Alu -8 304 89 2961 209 102 171 chr13 43979032 43979995 -57893174 - L1MD1 LINE L1 -5523 1017 19 208 239 186 26 chr13 43979996 43980109 -57893060 - MIR SINE MIR -56 152 22 2500 186 40 61 chr13 43980246 43980871 -57892298 - LTR9 LTR ERV1 0 612 1 3444 172 35 1 chr13 43981147 43981799 -57891370 - L1MB1 LINE L1 -1 6167 5494 3272 180 14 17 chr13 43981811 43982267 -57890902 + L1M3 LINE L1 4646 5098 -1070 1599 153 28 104 chr13 43982267 43982620 -57890549 + MLT1A1 LTR MaLR 3 325 -40 2332 104 0 7 chr13 43982620 43982928 -57890241 - AluSc SINE Alu -3 306 1 1599 153 28 104 chr13 43982928 43982967 -57890202 + MLT1A1 LTR MaLR 325 365 0 3272 180 14 17 chr13 43982967 43983320 -57889849 + L1M3 LINE L1 5098 5450 -718 183 324 9 83 chr13 43984059 43984167 -57889002 - L3 LINE CR1 -39 1538 1439 433 284 58 32 chr13 43984557 43984747 -57888422 - L2 LINE L2 -1 3312 3118 805 222 6 6 chr13 43984793 43984960 -57888209 - FAM SINE Alu -10 175 9 432 117 13 26 chr13 43984960 43985037 -57888132 - LTR30 LTR ERV1 -2 720 645 13183 70 1 6 chr13 43985039 43986778 -57886391 - HERV30 LTR ERV1 -6526 1731 1 4880 97 18 7 chr13 43986778 43987492 -57885677 - LTR30 LTR ERV1 0 722 1 850 254 106 113 chr13 43987515 43988525 -57884644 - L2 LINE L2 -353 2961 1959 252 291 111 35 chr13 43989909 43990027 -57883142 + L3 LINE CR1 1146 1286 -291 1874 133 84 0 chr13 43990027 43990312 -57882857 + AluSx SINE Alu 1 309 -3 252 291 111 35 chr13 43990312 43990392 -57882777 + L3 LINE CR1 1286 1359 -218 287 304 130 29 chr13 43990392 43990530 -57882639 - L2 LINE L2 -6 3266 3115 454 343 147 8 chr13 43990654 43991021 -57882148 + L2 LINE L2 2560 2977 -337 344 373 29 53 chr13 43991208 43991284 -57881885 + L2 LINE L2 3069 3145 -127 1847 146 48 0 chr13 43991284 43991578 -57881591 - AluSx SINE Alu -4 308 1 344 373 29 53 chr13 43991578 43991710 -57881459 + L2 LINE L2 3145 3272 0 1538 223 105 24 chr13 43991938 43992311 -57880858 + MLT2B1 LTR ERVL 1 403 -117 276 163 0 0 chr13 43992315 43992364 -57880805 - MIR SINE MIR -75 133 85 999 34 0 0 chr13 43994922 43995039 -57878130 + L1PA5 LINE L1 6023 6139 -15 2259 119 0 0 chr13 43995086 43995396 -57877773 + AluSg SINE Alu 1 310 0 22 0 0 0 chr13 43996580 43996602 -57876567 + AT_rich Low_complexity Low_complexity 1 22 0 2031 153 0 7 chr13 43998745 43999052 -57874117 + AluSx SINE Alu 3 307 -5 2021 135 10 3 chr13 43999272 43999568 -57873601 + AluJb SINE Alu 1 298 -14 423 200 17 9 chr13 43999581 43999696 -57873473 + GA-rich Low_complexity Low_complexity 2 117 0 494 281 5 40 chr13 44000120 44000319 -57872850 + LTR16C LTR ERVL 300 491 0 24 0 0 0 chr13 44001263 44001287 -57871882 + AT_rich Low_complexity Low_complexity 1 24 0 241 70 47 23 chr13 44001664 44001707 -57871462 - MLT2C2 LTR ERVL 0 464 421 608 225 0 11 chr13 44001708 44001890 -57871279 + CT-rich Low_complexity Low_complexity 1 180 0 1643 205 35 0 chr13 44001909 44002327 -57870842 - MLT2B1 LTR ERVL -39 481 1 276 30 0 0 chr13 44002384 44002417 -57870752 + (GAGAA)n Simple_repeat Simple_repeat 4 36 0 402 209 167 42 chr13 44002546 44002712 -57870457 - LTR50 LTR ERVL -351 190 18 850 208 51 15 chr13 44003515 44003712 -57869457 - MER20 DNA MER1_type 0 219 16 2107 89 7 0 chr13 44003768 44004078 -57869091 + AluY SINE Alu 1 312 0 272 133 0 0 chr13 44005182 44005227 -57867942 - MER116 DNA Mariner -1 79 35 847 164 22 0 chr13 44005234 44005368 -57867801 + AluJo SINE Alu 1 137 -175 258 294 22 22 chr13 44005370 44005550 -57867619 + (TA)n Simple_repeat Simple_repeat 1 180 0 1613 262 91 63 chr13 44005562 44006233 -57866936 - L2 LINE L2 -157 3156 2443 736 181 0 8 chr13 44006233 44006360 -57866809 + FLAM_A SINE Alu 1 126 -7 1613 262 91 63 chr13 44006360 44006497 -57866672 - L2 LINE L2 -870 2443 2311 10898 28 0 0 chr13 44007152 44009210 -57863959 - L1PA3 LINE L1 -2 6153 4094 1435 144 28 1 chr13 44009398 44009716 -57863453 - MER47A DNA MER2_type -3 363 2 442 260 106 0 chr13 44012151 44012274 -57860895 + MIR SINE MIR 13 148 -114 403 221 53 11 chr13 44012790 44012885 -57860284 + LTR16C LTR ERVL 393 491 0 414 0 0 0 chr13 44014210 44014256 -57858913 + (TG)n Simple_repeat Simple_repeat 2 47 0 197 277 119 65 chr13 44015098 44015271 -57857898 + MIR3 SINE MIR 6 177 -66 22 0 0 0 chr13 44015823 44015845 -57857324 + AT_rich Low_complexity Low_complexity 1 22 0 300 19 37 37 chr13 44015997 44016051 -57857118 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 3095 120 48 26 chr13 44016052 44016568 -57856601 - LTR9B LTR ERV1 -85 559 29 2505 47 3 0 chr13 44016568 44016864 -57856305 - AluY SINE Alu -14 297 1 3095 120 48 26 chr13 44016864 44016890 -57856279 - LTR9B LTR ERV1 -615 29 5 655 205 0 8 chr13 44016892 44017014 -57856155 - HUERS-P3b LTR ERV1 -4 7414 7294 302 241 231 93 chr13 44017462 44017570 -57855599 - MER5A DNA MER1_type 0 189 56 327 280 11 0 chr13 44018028 44018121 -57855048 - L1MD3 LINE L1 -66 7929 7836 2008 152 3 0 chr13 44018345 44018655 -57854514 + AluSx SINE Alu 1 311 -1 326 319 32 48 chr13 44020188 44020436 -57852733 + L2 LINE L2 1356 1599 -1715 31 26 0 0 chr13 44020917 44020955 -57852214 + AT_rich Low_complexity Low_complexity 1 38 0 2333 208 54 7 chr13 44022957 44023529 -57849640 - L1MB5 LINE L1 -9 6165 5567 2148 124 3 0 chr13 44023632 44023923 -57849246 + AluSx SINE Alu 1 292 -20 2359 128 40 35 chr13 44023954 44024199 -57848970 - Tigger2a DNA MER2_type -2276 432 190 2720 96 5 8 chr13 44024199 44024575 -57848594 - THE1C LTR MaLR 0 375 1 8945 145 38 69 chr13 44024575 44026205 -57846964 - THE1C-int LTR MaLR 0 1580 1 2415 116 13 24 chr13 44026205 44026584 -57846585 - THE1C LTR MaLR 0 375 1 2359 128 40 35 chr13 44026584 44026766 -57846403 - Tigger2a DNA MER2_type -2517 191 1 203 353 0 0 chr13 44027113 44027198 -57845971 + A-rich Low_complexity Low_complexity 1 85 0 261 221 93 23 chr13 44028758 44028844 -57844325 + MIR SINE MIR 104 195 -67 193 333 113 56 chr13 44029526 44029935 -57843234 - L2 LINE L2 -31 3282 2851 359 267 20 0 chr13 44030314 44030415 -57842754 - LTR33 LTR ERVL -13 508 406 366 248 88 0 chr13 44030579 44030704 -57842465 - LTR33 LTR ERVL -376 145 10 527 278 5 73 chr13 44030733 44030938 -57842231 + L2 LINE L2 3123 3313 0 2044 118 0 24 chr13 44030981 44031289 -57841880 - AluSx SINE Alu 0 303 3 207 88 0 0 chr13 44031317 44031351 -57841818 + (CAA)n Simple_repeat Simple_repeat 1 34 0 2561 300 135 36 chr13 44031849 44032325 -57840844 - L2 LINE L2 -36 3236 2808 1901 173 3 0 chr13 44032325 44032620 -57840549 + AluSx SINE Alu 1 296 -16 2561 300 135 36 chr13 44032620 44033716 -57839453 - L2 LINE L2 -464 2808 1821 1890 160 44 0 chr13 44033716 44034010 -57839159 + AluSx SINE Alu 1 307 -5 2561 300 135 36 chr13 44034010 44034339 -57838830 - L2 LINE L2 -1451 1821 1526 2111 142 9 72 chr13 44034339 44034366 -57838803 + L1MA4 LINE L1 5869 5896 -404 2441 158 36 5 chr13 44034366 44034778 -57838391 - MSTB LTR MaLR -1 425 1 2111 142 9 72 chr13 44034778 44034982 -57838187 + L1MA4 LINE L1 5896 6059 -241 2297 120 7 0 chr13 44034982 44035290 -57837879 + AluSx SINE Alu 1 310 -2 2111 142 9 72 chr13 44035290 44035516 -57837653 + L1MA4 LINE L1 6059 6298 -2 2561 300 135 36 chr13 44035516 44035575 -57837594 - L2 LINE L2 -1746 1526 913 868 280 118 63 chr13 44035774 44035857 -57837312 - L2 LINE L2 -2378 936 859 821 168 0 0 chr13 44035857 44035988 -57837181 + FLAM_C SINE Alu 2 132 -1 868 280 118 63 chr13 44035988 44036648 -57836521 - L2 LINE L2 -2455 859 152 206 236 18 121 chr13 44037086 44037251 -57835918 - L2 LINE L2 -1881 1433 1286 203 189 0 0 chr13 44037498 44037535 -57835634 + A-rich Low_complexity Low_complexity 1 37 0 541 279 95 50 chr13 44038808 44039030 -57834139 - MIR SINE MIR -21 241 10 379 269 114 0 chr13 44039136 44039329 -57833840 - L1MC5 LINE L1 -36 7925 7711 2313 107 0 0 chr13 44039531 44039822 -57833347 - AluSq SINE Alu -22 291 1 651 312 86 72 chr13 44039960 44040469 -57832700 - L2 LINE L2 -36 3236 2699 2778 7 0 0 chr13 44040469 44040772 -57832397 - AluYa5 SINE Alu -8 303 1 651 312 86 72 chr13 44040772 44040979 -57832190 - L2 LINE L2 -573 2699 2496 2154 136 0 0 chr13 44041061 44041355 -57831814 + AluSx SINE Alu 1 294 -18 225 0 0 0 chr13 44042136 44042161 -57831008 + (TC)n Simple_repeat Simple_repeat 2 26 0 326 146 22 22 chr13 44042161 44042250 -57830919 + (TA)n Simple_repeat Simple_repeat 1 89 0 379 233 108 8 chr13 44044105 44044225 -57828944 + MIR SINE MIR 110 241 -21 338 275 202 26 chr13 44045015 44045208 -57827961 + MIR SINE MIR 28 254 -8 29 28 0 0 chr13 44045233 44045269 -57827900 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 44045473 44045507 -57827662 + AT_rich Low_complexity Low_complexity 1 34 0 1144 292 180 34 chr13 44045510 44046320 -57826849 + L2 LINE L2 2274 3229 -84 2316 48 61 3 chr13 44046320 44046614 -57826555 - AluY SINE Alu 0 311 1 1144 292 180 34 chr13 44046614 44046709 -57826460 + L2 LINE L2 3229 3309 -4 1461 224 188 26 chr13 44047484 44047980 -57825189 - MLT1E LTR MaLR 0 593 18 690 300 77 20 chr13 44048026 44048204 -57824965 + MIR SINE MIR 2 199 -63 2087 118 0 45 chr13 44048204 44048518 -57824651 + AluSx SINE Alu 1 300 -12 690 300 77 20 chr13 44048518 44048586 -57824583 + MIR SINE MIR 199 262 0 379 233 108 8 chr13 44049744 44049864 -57823305 - MIR SINE MIR -21 241 110 291 211 53 0 chr13 44051371 44051447 -57821722 - MLT1L LTR MaLR -336 279 200 294 50 0 0 chr13 44051484 44051524 -57821645 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1877 189 22 0 chr13 44051615 44051970 -57821199 - MLT1A1 LTR MaLR 0 365 3 205 275 209 39 chr13 44052241 44052423 -57820746 + L2 LINE L2 3101 3313 0 2508 81 0 0 chr13 44052447 44052757 -57820412 + AluSx SINE Alu 1 310 -2 183 80 0 0 chr13 44052757 44052782 -57820387 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 467 208 33 25 chr13 44054007 44054127 -57819042 + MER20B DNA MER1_type 53 173 -610 547 189 31 66 chr13 44054880 44055108 -57818061 - L1MEd LINE L1 -4974 1145 926 202 184 0 0 chr13 44055948 44055986 -57817183 + L2 LINE L2 3268 3305 -8 216 191 0 0 chr13 44056284 44056326 -57816843 + L2 LINE L2 3272 3313 0 454 304 36 0 chr13 44056352 44056490 -57816679 + MIR SINE MIR 120 262 0 830 135 0 57 chr13 44056630 44056771 -57816398 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr13 44056869 44056893 -57816276 + AT_rich Low_complexity Low_complexity 1 24 0 2115 137 0 0 chr13 44057875 44058175 -57814994 - AluSx SINE Alu -6 306 7 302 246 254 16 chr13 44059259 44059381 -57813788 + MIR SINE MIR 31 181 -81 358 200 0 0 chr13 44059685 44059750 -57813419 + Tigger2 DNA MER2_type 5 69 -2649 * 2492 138 9 29 chr13 44059740 44060195 -57812974 + Tigger2 DNA MER2_type 2273 2718 0 551 245 148 0 chr13 44060449 44060604 -57812565 + MER5A DNA MER1_type 10 187 -2 278 274 0 0 chr13 44060621 44060683 -57812486 + L2 LINE L2 3251 3312 -1 1645 167 3 42 chr13 44060810 44061121 -57812048 + AluJb SINE Alu 1 299 -13 564 295 52 12 chr13 44061948 44062121 -57811048 + MIR SINE MIR 24 203 -59 689 192 99 7 chr13 44062140 44062291 -57810878 + MIR SINE MIR 12 176 -86 28 0 0 0 chr13 44062299 44062327 -57810842 + AT_rich Low_complexity Low_complexity 1 28 0 2807 69 0 0 chr13 44062327 44062687 -57810482 - L1PA6 LINE L1 0 6154 5795 260 231 179 0 chr13 44062687 44062765 -57810404 + MIR SINE MIR 161 252 -10 1623 165 20 94 chr13 44063471 44063865 -57809304 + MLT1A1 LTR MaLR 1 365 0 372 257 63 51 chr13 44064170 44064345 -57808824 - MIR SINE MIR 0 262 86 2029 132 0 35 chr13 44064603 44064921 -57808248 - AluSx SINE Alu -4 308 2 374 271 75 75 chr13 44065166 44065354 -57807815 - MLT1L LTR MaLR -224 391 204 264 294 0 0 chr13 44065397 44065465 -57807704 - MLT1L LTR MaLR -530 85 18 279 292 138 65 chr13 44065497 44065788 -57807381 - L2 LINE L2 -75 3238 2927 1052 182 5 27 chr13 44066167 44066283 -57806886 + MER5A DNA MER1_type 6 118 -71 2187 158 30 57 chr13 44066283 44066721 -57806448 + MSTB LTR MaLR 1 426 0 1052 182 5 27 chr13 44066721 44066791 -57806378 + MER5A DNA MER1_type 118 188 -1 877 264 60 22 chr13 44066845 44067159 -57806010 - L2 LINE L2 -1009 2305 1980 278 213 0 16 chr13 44067261 44067322 -57805847 + MLT1L LTR MaLR 164 223 -392 250 0 0 0 chr13 44067489 44067518 -57805651 + MIR SINE MIR 122 150 -112 473 271 129 0 chr13 44067560 44067715 -57805454 + MLT1L LTR MaLR 441 615 0 343 319 127 24 chr13 44068283 44068449 -57804720 + MIR3 SINE MIR 17 199 -9 327 368 48 0 chr13 44070835 44070960 -57802209 - L2 LINE L2 0 3272 3142 213 154 0 0 chr13 44071121 44071160 -57802009 + GA-rich Low_complexity Low_complexity 1 39 0 183 42 0 0 chr13 44071188 44071212 -57801957 + (CAGA)n Simple_repeat Simple_repeat 2 25 0 234 368 19 39 chr13 44071744 44071899 -57801270 - L2 LINE L2 -285 2987 2836 1913 129 0 50 chr13 44072394 44072711 -57800458 - AluSq SINE Alu -12 301 1 1447 232 139 16 chr13 44072827 44073267 -57799902 - MLT1F1 LTR MaLR -7 560 67 238 333 13 13 chr13 44073626 44073701 -57799468 - MLT1K LTR MaLR -213 375 301 528 221 90 28 chr13 44073858 44074003 -57799166 + MLT1I LTR MaLR 1 154 -255 4421 164 66 33 chr13 44074003 44075365 -57797804 - L1MB7 LINE L1 -2 6182 4777 491 351 89 8 chr13 44075369 44075617 -57797552 + MLT1I LTR MaLR 142 409 0 211 350 79 76 chr13 44075779 44076096 -57797073 - L2 LINE L2 -10 3262 2945 23 0 0 0 chr13 44077152 44077175 -57795994 + AT_rich Low_complexity Low_complexity 1 23 0 2095 120 0 0 chr13 44077669 44077979 -57795190 + AluSx SINE Alu 1 310 0 444 209 7 14 chr13 44077983 44078122 -57795047 + GA-rich Low_complexity Low_complexity 2 139 0 897 192 20 30 chr13 44078344 44078547 -57794622 - MLT1A1 LTR MaLR -155 210 10 235 284 12 25 chr13 44078948 44079029 -57794140 + HAL1b LINE L1 257 336 -1012 22 0 0 0 chr13 44079032 44079054 -57794115 + AT_rich Low_complexity Low_complexity 1 22 0 1995 97 14 0 chr13 44079054 44079332 -57793837 - L1PA8 LINE L1 -5 6167 5886 2417 73 7 0 chr13 44079346 44079646 -57793523 - AluSp SINE Alu -11 302 1 315 290 11 57 chr13 44079653 44079829 -57793340 + HAL1b LINE L1 496 663 -685 1714 193 0 3 chr13 44080506 44080802 -57792367 + AluJo SINE Alu 1 295 -17 1023 301 128 45 chr13 44080823 44082022 -57791147 + L1 LINE L1 2340 3707 -2439 2333 214 85 43 chr13 44082448 44083059 -57790110 + MLT1E1 LTR MaLR 7 643 -11 871 179 66 0 chr13 44083182 44083333 -57789836 + FRAM SINE Alu 1 159 -17 307 262 19 19 chr13 44083660 44083763 -57789406 + L1 LINE L1 4343 4445 -1701 909 197 6 33 chr13 44083871 44084054 -57789115 + AluJo SINE Alu 112 289 -23 350 264 83 21 chr13 44084202 44084346 -57788823 - MIR SINE MIR 0 262 110 217 247 178 14 chr13 44084990 44085063 -57788106 - L2 LINE L2 -2 3270 3186 1223 249 60 122 chr13 44085242 44085719 -57787450 - L2 LINE L2 -630 2684 2179 412 151 35 0 chr13 44085719 44085805 -57787364 + L1MB3 LINE L1 6094 6182 -1 1223 249 60 122 chr13 44085805 44085826 -57787343 - L2 LINE L2 -1135 2179 2158 1887 144 3 10 chr13 44085826 44086125 -57787044 + AluSx SINE Alu 1 297 -15 1223 249 60 122 chr13 44086125 44086510 -57786659 - L2 LINE L2 -1156 2158 1855 2319 166 90 4 chr13 44088387 44088852 -57784317 - MLT1D LTR MaLR 0 505 1 2028 145 127 18 chr13 44089150 44089536 -57783633 + MSTA LTR MaLR 1 428 0 208 208 21 0 chr13 44089630 44089726 -57783443 + (TA)n Simple_repeat Simple_repeat 1 98 0 386 239 0 77 chr13 44089733 44089850 -57783319 + L1MC4 LINE L1 6614 6721 -1321 1988 129 28 0 chr13 44090048 44090334 -57782835 + AluY SINE Alu 1 294 -17 599 268 105 14 chr13 44090514 44090723 -57782446 + MIR SINE MIR 21 248 -14 628 276 64 32 chr13 44090900 44091150 -57782019 - MIR SINE MIR -2 260 3 21 0 0 0 chr13 44091217 44091238 -57781931 + AT_rich Low_complexity Low_complexity 1 21 0 210 305 68 0 chr13 44091238 44091297 -57781872 - L2 LINE L2 -15 3298 3236 1012 136 22 5 chr13 44091629 44091813 -57781356 - L1MD2 LINE L1 -10 6349 6163 432 0 0 0 chr13 44091817 44091865 -57781304 + (TG)n Simple_repeat Simple_repeat 2 49 0 1702 166 86 13 chr13 44091879 44092193 -57780976 - MER1B DNA MER1_type 0 337 1 805 170 0 0 chr13 44092296 44092431 -57780738 - FRAM SINE Alu -2 174 40 1790 137 52 0 chr13 44092485 44092778 -57780391 - AluSq SINE Alu 0 307 1 831 251 133 42 chr13 44093557 44093820 -57779349 + Charlie8 DNA MER1_type 1 287 -2130 2063 198 14 24 chr13 44095638 44096147 -57777022 - MER69 DNA AcHobo -5 2521 2018 358 259 12 12 chr13 44096176 44096261 -57776908 - MER69 DNA AcHobo -2091 435 351 2031 101 0 0 chr13 44096277 44096555 -57776614 + AluSq SINE Alu 36 313 0 7208 49 6 0 chr13 44096572 44098158 -57775011 + L1PA7 LINE L1 4604 6154 0 545 201 241 6 chr13 44098409 44098583 -57774586 - MER69 DNA AcHobo -2195 331 117 1818 143 42 7 chr13 44099082 44099369 -57773800 + AluSx SINE Alu 1 297 -15 24 0 0 0 chr13 44099686 44099710 -57773459 + AT_rich Low_complexity Low_complexity 1 24 0 799 310 108 27 chr13 44100236 44100643 -57772526 - MLT1K LTR MaLR -114 474 35 2587 106 86 5 chr13 44100853 44101249 -57771920 - MSTA LTR MaLR 0 428 1 607 189 126 13 chr13 44101637 44101796 -57771373 - MER63A DNA MER1_type -33 177 1 885 268 79 14 chr13 44102463 44102743 -57770426 - L2 LINE L2 -1260 2054 1757 230 0 33 0 chr13 44102909 44102939 -57770230 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 348 188 0 0 chr13 44104096 44104165 -57769004 + (TG)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr13 44104269 44104294 -57768875 + AT_rich Low_complexity Low_complexity 1 25 0 435 319 132 38 chr13 44104706 44104919 -57768250 - MIR SINE MIR -5 257 25 31 44 0 0 chr13 44105915 44105960 -57767209 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr13 44106141 44106172 -57766997 + AT_rich Low_complexity Low_complexity 1 31 0 180 200 60 40 chr13 44106346 44106396 -57766773 - L3 LINE CR1 -1 1576 1526 1359 244 81 108 chr13 44106756 44107358 -57765811 - MLT1G LTR MaLR -7 583 3 22 56 0 0 chr13 44107365 44107401 -57765768 + AT_rich Low_complexity Low_complexity 1 36 0 181 341 71 65 chr13 44107401 44107571 -57765598 - MIR3 SINE MIR -6 202 32 4542 151 53 17 chr13 44107764 44109001 -57764168 + L1PA16 LINE L1 4840 6157 -9 23 0 0 0 chr13 44109001 44109024 -57764145 + AT_rich Low_complexity Low_complexity 1 23 0 1957 167 0 0 chr13 44109489 44109783 -57763386 - AluJb SINE Alu -17 295 2 453 235 169 38 chr13 44110482 44110617 -57762552 + MIR SINE MIR 1 168 -94 378 0 0 0 chr13 44110617 44110659 -57762510 + (CA)n Simple_repeat Simple_repeat 2 43 0 453 235 169 38 chr13 44110659 44110706 -57762463 + MIR SINE MIR 168 207 -55 1130 223 81 108 chr13 44111425 44111576 -57761593 + MER113 DNA MER1_type? 1 154 -367 1852 179 3 0 chr13 44111576 44111861 -57761308 - AluJo SINE Alu -26 286 1 1130 223 81 108 chr13 44111861 44112238 -57760931 + MER113 DNA MER1_type? 154 515 -6 246 348 37 30 chr13 44112237 44112372 -57760797 + MIR SINE MIR 6 141 -121 * 190 273 86 58 chr13 44112654 44112793 -57760376 + L2 LINE L2 2124 2266 -1048 207 0 0 0 chr13 44113684 44113707 -57759462 + (T)n Simple_repeat Simple_repeat 1 23 0 302 202 172 20 chr13 44115056 44115155 -57758014 - L1MC4 LINE L1 0 8042 7929 943 85 0 0 chr13 44115157 44115287 -57757882 - AluSc SINE Alu -5 304 175 238 228 32 32 chr13 44115436 44115559 -57757610 - L1MC5 LINE L1 -279 7682 7560 336 153 16 12 chr13 44115606 44115740 -57757429 - Alu SINE Alu -6 296 246 2148 75 7 3 chr13 44116145 44116437 -57756732 + AluY SINE Alu 1 293 -18 570 209 80 25 chr13 44116563 44116726 -57756443 - MER20 DNA MER1_type -7 212 41 799 269 120 12 chr13 44116772 44117256 -57755913 - L1MC4 LINE L1 -547 7495 6960 210 71 0 0 chr13 44119280 44119308 -57753861 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 460 263 91 86 chr13 44119414 44119843 -57753326 - L1M2 LINE L1 -5710 1139 709 610 265 0 36 chr13 44120613 44120779 -57752390 - MIR SINE MIR -102 160 1 2125 75 31 20 chr13 44122476 44122769 -57750400 + AluSg SINE Alu 1 296 -14 387 280 85 7 chr13 44122795 44122931 -57750238 - MIR SINE MIR -51 157 12 1406 188 73 27 chr13 44123183 44123512 -57749657 - MER2 DNA MER2_type 0 344 1 1245 86 55 0 chr13 44124707 44124870 -57748299 - AluSp SINE Alu -7 306 135 220 295 167 0 chr13 44125942 44126020 -57747149 - L2 LINE L2 -4 3268 3178 2777 13 0 0 chr13 44126318 44126625 -57746544 - AluYa5 SINE Alu -4 307 1 957 179 0 0 chr13 44126633 44126784 -57746385 - FRAM SINE Alu -15 151 1 2089 128 19 28 chr13 44126803 44127163 -57746006 + THE1B LTR MaLR 1 357 -7 868 141 0 0 chr13 44127163 44127284 -57745885 - AluSq/x SINE Alu -191 121 1 851 283 151 43 chr13 44127536 44128262 -57744907 - L2 LINE L2 -330 2983 2175 1152 153 128 3 chr13 44128262 44128550 -57744619 + MER33 DNA MER1_type 1 324 0 851 283 151 43 chr13 44128550 44128596 -57744573 - L2 LINE L2 -1138 2175 2135 21 36 0 0 chr13 44128869 44128897 -57744272 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 44128955 44128977 -57744192 + AT_rich Low_complexity Low_complexity 1 22 0 306 312 55 9 chr13 44129210 44129319 -57743850 + L2 LINE L2 3197 3310 -3 2144 74 3 0 chr13 44129828 44130125 -57743044 + THE1A LTR MaLR 1 298 -57 1617 70 5 0 chr13 44130115 44130329 -57742840 + THE1A LTR MaLR 141 355 0 * 11932 90 6 1 chr13 44130329 44131901 -57741268 + THE1A-int LTR MaLR 1 1580 0 2751 84 0 0 chr13 44131901 44132256 -57740913 + THE1A LTR MaLR 1 355 0 446 196 0 0 chr13 44133729 44133812 -57739357 + MER5A DNA MER1_type 4 86 -103 370 202 34 34 chr13 44134159 44134248 -57738921 - MER5C DNA MER1_type -230 94 6 23 86 0 0 chr13 44135189 44135247 -57737922 + AT_rich Low_complexity Low_complexity 1 58 0 980 240 24 24 chr13 44135361 44135607 -57737562 + MIR SINE MIR 4 249 -13 1037 226 18 9 chr13 44136278 44136499 -57736670 + MER58A DNA MER1_type 2 224 0 213 184 66 0 chr13 44137338 44137414 -57735755 + (TTA)n Simple_repeat Simple_repeat 2 82 0 228 338 25 0 chr13 44138661 44138741 -57734428 + L2 LINE L2 1839 1920 -1394 1709 182 7 3 chr13 44139132 44139428 -57733741 - AluJo SINE Alu -15 297 1 252 362 120 21 chr13 44139432 44139464 -57733705 + L2 LINE L2 2170 2197 -1117 2116 114 35 0 chr13 44139464 44139753 -57733416 - AluSx SINE Alu -13 299 1 252 362 120 21 chr13 44139753 44140054 -57733115 + L2 LINE L2 2197 2536 -778 634 344 73 59 chr13 44140257 44140681 -57732488 + L2 LINE L2 2842 3271 -1 528 301 9 0 chr13 44140696 44140901 -57732268 - L1ME2 LINE L1 0 6162 5950 350 103 0 0 chr13 44141026 44141084 -57732085 + Alu SINE Alu 245 302 0 381 271 88 51 chr13 44141145 44141735 -57731434 - L1M4 LINE L1 -2967 3179 2568 300 312 67 32 chr13 44141891 44142266 -57730903 - HAL1b LINE L1 -808 540 153 3299 59 9 5 chr13 44143552 44143977 -57729192 + L1PA8 LINE L1 5746 6172 0 23 0 0 0 chr13 44144070 44144093 -57729076 + AT_rich Low_complexity Low_complexity 1 23 0 1334 267 53 24 chr13 44144368 44144825 -57728344 - L1M4 LINE L1 -830 5316 4874 2374 81 0 7 chr13 44144825 44145122 -57728047 + AluY SINE Alu 1 295 -16 1334 267 53 24 chr13 44145122 44145302 -57727867 - L1M4 LINE L1 -1272 4874 4655 2426 143 3 3 chr13 44145302 44145666 -57727503 - THE1B LTR MaLR 0 364 1 1334 267 53 24 chr13 44145666 44145727 -57727442 - L1M4 LINE L1 -1491 4655 4597 346 292 0 5 chr13 44146656 44146867 -57726302 + G-rich Low_complexity Low_complexity 1 209 0 349 268 57 77 chr13 44146882 44147128 -57726041 + MIR SINE MIR 22 262 0 711 241 97 35 chr13 44147488 44147716 -57725453 + L2 LINE L2 1222 1463 -1851 2723 281 95 27 chr13 44147834 44148319 -57724850 + L2 LINE L2 1928 2378 -935 2488 75 13 0 chr13 44148319 44148626 -57724543 - AluSp SINE Alu -2 311 1 2723 281 95 27 chr13 44148626 44149247 -57723922 + L2 LINE L2 2378 3104 -209 198 0 0 0 chr13 44149389 44149411 -57723758 + (A)n Simple_repeat Simple_repeat 1 22 0 922 116 0 0 chr13 44149827 44149948 -57723221 - AluSq/x SINE Alu -191 121 1 912 160 29 3 chr13 44149949 44150221 -57722948 - L1M3 LINE L1 -740 5440 5164 1735 196 93 10 chr13 44150227 44150711 -57722458 - L1M3 LINE L1 -1107 5039 4516 2089 236 22 28 chr13 44150715 44151351 -57721818 - L1M3 LINE L1 -1782 4364 3733 371 139 76 0 chr13 44151376 44151455 -57721714 - L1MB2 LINE L1 -7 6164 6080 1458 153 21 60 chr13 44151456 44151973 -57721196 + L1MB2 LINE L1 5391 6037 -134 259 222 138 24 chr13 44151971 44152070 -57721099 - L1MEc LINE L1 -4118 2278 2192 * 1582 220 42 16 chr13 44152070 44152456 -57720713 - MSTD LTR MaLR 0 396 1 259 222 138 24 chr13 44152456 44152523 -57720646 - L1MEc LINE L1 -4204 2192 2093 6299 103 18 43 chr13 44152524 44153552 -57719617 + LTR13 LTR ERVK 1 1002 -5 591 281 142 7 chr13 44153570 44154015 -57719154 - L1MEc LINE L1 -4312 2084 1580 1705 179 0 24 chr13 44154202 44154498 -57718671 + AluJo SINE Alu 1 289 -23 2226 106 3 10 chr13 44155109 44155412 -57717757 - AluSx SINE Alu -11 301 1 2239 72 7 0 chr13 44155985 44156264 -57716905 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 44156264 44156293 -57716876 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 465 312 24 76 chr13 44156630 44156880 -57716289 + L1MEd LINE L1 599 835 -5284 2637 154 10 2 chr13 44157195 44157675 -57715494 + L1MA9 LINE L1 5304 5787 -525 1985 140 86 37 chr13 44157675 44158083 -57715086 + Tigger2a DNA MER2_type 1 428 -6 1662 204 59 31 chr13 44158089 44158565 -57714604 + L1MA9 LINE L1 5786 6274 -38 373 363 38 19 chr13 44158578 44158790 -57714379 + L1M4 LINE L1 3347 3562 -2584 1716 148 25 74 chr13 44158803 44159167 -57714002 - MER7A DNA MER2_type -2 344 1 1009 243 67 45 chr13 44159194 44159642 -57713527 - L1MEc LINE L1 -5304 901 444 1199 264 65 37 chr13 44159902 44160391 -57712778 - MLT1D LTR MaLR 0 505 3 1049 233 108 39 chr13 44160436 44161000 -57712169 - LTR48B LTR ERV1 0 644 1 10208 233 22 25 chr13 44161453 44162642 -57710527 - L1P LINE L1 -961 5185 3995 304 28 0 0 chr13 44162642 44162678 -57710491 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1741 192 0 0 chr13 44162678 44162959 -57710210 - AluJo SINE Alu -1 316 1 10208 233 22 25 chr13 44162959 44163736 -57709433 - L1P LINE L1 -2150 3996 3219 2041 138 0 10 chr13 44163736 44164047 -57709122 - AluSx SINE Alu -2 310 3 10208 233 22 25 chr13 44164047 44164246 -57708923 - L1P LINE L1 -2927 3219 3021 1943 148 7 16 chr13 44164246 44164551 -57708618 - AluSx SINE Alu -10 302 1 10208 233 22 25 chr13 44164551 44166128 -57707041 - L1P LINE L1 -3125 3021 1452 306 270 67 70 chr13 44166587 44166946 -57706223 - L1MCa LINE L1 -4939 1487 1130 551 317 29 10 chr13 44167685 44167890 -57705279 - MIR SINE MIR -6 256 48 21 0 0 0 chr13 44169236 44169257 -57703912 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr13 44169454 44169475 -57703694 + (A)n Simple_repeat Simple_repeat 1 21 0 1629 189 14 0 chr13 44171938 44172234 -57700935 + AluJb SINE Alu 1 300 -12 5687 128 24 25 chr13 44173022 44174457 -57698712 - L1PB2 LINE L1 0 6151 4716 2280 102 3 0 chr13 44174872 44175176 -57697993 - AluSq SINE Alu -8 305 1 279 322 62 34 chr13 44175196 44175342 -57697827 + MIR3 SINE MIR 20 169 -39 235 197 30 0 chr13 44175343 44175409 -57697760 + (TTTAA)n Simple_repeat Simple_repeat 2 69 0 2129 117 0 0 chr13 44178151 44178441 -57694728 + AluSg SINE Alu 1 290 -20 22 56 0 0 chr13 44178883 44178919 -57694250 + AT_rich Low_complexity Low_complexity 1 36 0 949 244 126 33 chr13 44179515 44179879 -57693290 - MER68 LTR ERV1 -155 407 10 31 68 0 0 chr13 44180059 44180118 -57693051 + AT_rich Low_complexity Low_complexity 1 59 0 270 160 0 0 chr13 44180170 44180220 -57692949 + (TG)n Simple_repeat Simple_repeat 1 50 0 236 283 42 50 chr13 44180513 44180633 -57692536 - MIR SINE MIR -60 202 84 362 213 27 0 chr13 44180949 44181024 -57692145 - MIR SINE MIR -3 259 183 242 358 66 83 chr13 44181306 44181594 -57691575 - L3b LINE CR1 -19 1564 1282 26 0 0 0 chr13 44182454 44182480 -57690689 + AT_rich Low_complexity Low_complexity 1 26 0 558 296 86 15 chr13 44183038 44183305 -57689864 - L3b LINE CR1 -196 1387 1102 713 215 37 84 chr13 44183318 44183509 -57689660 - MER5A DNA MER1_type -1 188 7 1918 136 3 17 chr13 44184121 44184415 -57688754 - AluSx SINE Alu -22 290 1 261 326 156 18 chr13 44185174 44185370 -57687799 + MIR SINE MIR 15 238 -24 321 313 15 45 chr13 44187648 44187782 -57685387 - MIR SINE MIR -12 250 121 405 345 49 22 chr13 44188026 44188252 -57684917 + MIR SINE MIR 26 257 -5 181 321 107 24 chr13 44188302 44188386 -57684783 - L2 LINE L2 -50 3222 3132 203 122 0 24 chr13 44188581 44188622 -57684547 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 298 121 32 chr13 44188733 44188857 -57684312 + LTR67 LTR ERVL 2 136 -421 351 268 173 28 chr13 44189047 44189226 -57683943 - MER63A DNA MER1_type -5 205 1 372 336 8 25 chr13 44189240 44189437 -57683732 - L1ME LINE L1 -503 5659 5469 490 252 153 42 chr13 44189457 44189602 -57683567 - L1ME LINE L1 -1466 4680 4552 691 286 55 0 chr13 44189602 44189801 -57683368 + MER63A DNA MER1_type 1 210 0 490 252 153 42 chr13 44189801 44190008 -57683161 - L1ME LINE L1 -1594 4552 4289 848 244 4 25 chr13 44190136 44190336 -57682833 - L1MB7 LINE L1 -227 5957 5761 604 75 0 0 chr13 44190336 44190416 -57682753 - MADE1 DNA Mariner 0 80 1 848 244 4 25 chr13 44190416 44190453 -57682716 - L1MB7 LINE L1 -423 5761 5725 1759 223 48 31 chr13 44192253 44192707 -57680462 - MLT1C LTR MaLR 0 467 6 897 294 127 8 chr13 44192876 44193277 -57679892 - Charlie7 DNA MER1_type -2155 457 9 571 150 88 0 chr13 44193357 44193470 -57679699 + MER3 DNA MER1_type 87 209 0 2138 113 0 0 chr13 44194289 44194571 -57678598 - AluSx SINE Alu -28 284 3 1928 127 14 0 chr13 44195375 44195658 -57677511 + AluSx SINE Alu 1 287 -25 35 0 0 0 chr13 44195658 44195693 -57677476 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 44197324 44197345 -57675824 + (TTA)n Simple_repeat Simple_repeat 1 21 0 5613 132 56 11 chr13 44197468 44197767 -57675402 + L1MA4 LINE L1 4689 4973 -1327 1370 164 131 15 chr13 44197767 44198035 -57675134 + AluSg1 SINE Alu 1 299 -10 5613 132 56 11 chr13 44198035 44198494 -57674675 + L1MA4 LINE L1 4973 5410 -890 2410 135 66 5 chr13 44198494 44198901 -57674268 + MSTB1 LTR MaLR 1 432 0 5613 132 56 11 chr13 44198901 44199191 -57673978 + L1MA4 LINE L1 5410 5686 -614 180 111 0 0 chr13 44199191 44199218 -57673951 + (TATG)n Simple_repeat Simple_repeat 2 28 0 297 75 0 0 chr13 44199218 44199258 -57673911 + (CA)n Simple_repeat Simple_repeat 2 41 0 5613 132 56 11 chr13 44199258 44199743 -57673426 + L1MA4 LINE L1 5685 6300 0 256 229 14 0 chr13 44200198 44200268 -57672901 - L1MA9 LINE L1 -8 6304 6234 23 0 0 0 chr13 44200330 44200353 -57672816 + AT_rich Low_complexity Low_complexity 1 23 0 1802 144 13 39 chr13 44201158 44201464 -57671705 + AluSx SINE Alu 1 298 -14 1500 94 18 0 chr13 44201629 44201852 -57671317 - L1PA10 LINE L1 0 6168 5942 245 366 147 16 chr13 44202472 44202723 -57670446 + L2 LINE L2 2391 2674 -640 303 28 0 0 chr13 44204072 44204108 -57669061 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 71 0 0 chr13 44204209 44204251 -57668918 + AT_rich Low_complexity Low_complexity 1 42 0 880 294 110 32 chr13 44204483 44205275 -57667894 - L1MEc LINE L1 -5255 1141 288 309 297 8 23 chr13 44205322 44205450 -57667719 - L1MEc LINE L1 -6196 200 75 5729 128 37 21 chr13 44209490 44209981 -57663188 - L1MA5 LINE L1 -5 6295 5813 1450 151 29 131 chr13 44209981 44210219 -57662950 - MER2 DNA MER2_type 0 344 158 1753 143 70 7 chr13 44210219 44210506 -57662663 + AluSp SINE Alu 1 305 -8 1450 151 29 131 chr13 44210506 44210650 -57662519 - MER2 DNA MER2_type -186 158 1 5729 128 37 21 chr13 44210650 44211029 -57662140 - L1MA5 LINE L1 -487 5813 5441 2443 150 61 14 chr13 44211029 44211469 -57661700 - LOR1b LTR ERV1 0 461 1 5729 128 37 21 chr13 44211469 44211576 -57661593 - L1MA5 LINE L1 -859 5441 5337 2102 110 7 23 chr13 44211576 44211886 -57661283 - AluSx SINE Alu -7 305 1 207 69 0 0 chr13 44211895 44211924 -57661245 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 5729 128 37 21 chr13 44211924 44212150 -57661019 - L1MA5 LINE L1 -970 5330 5063 435 255 181 59 chr13 44212455 44212659 -57660510 + MIR SINE MIR 2 230 -32 21 82 0 0 chr13 44212762 44212811 -57660358 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr13 44213056 44213079 -57660090 + (T)n Simple_repeat Simple_repeat 1 23 0 2650 278 98 27 chr13 44213221 44213839 -57659330 - L2 LINE L2 -209 3104 2532 2470 75 13 0 chr13 44213839 44214146 -57659023 + AluSp SINE Alu 1 311 -2 2650 278 98 27 chr13 44214146 44214631 -57658538 - L2 LINE L2 -781 2532 1928 703 246 97 35 chr13 44214749 44214977 -57658192 - L2 LINE L2 -1851 1463 1222 678 246 55 55 chr13 44215337 44215593 -57657576 - MIR SINE MIR 0 262 7 2641 52 0 0 chr13 44215912 44216221 -57656948 - AluY SINE Alu -2 309 1 1975 145 10 3 chr13 44216383 44216679 -57656490 + AluSx SINE Alu 2 299 -13 424 246 63 8 chr13 44218125 44218251 -57654918 - MLT1L LTR MaLR -17 598 466 1340 133 8 68 chr13 44218300 44218469 -57654700 - LTR8 LTR ERV1 0 691 538 2130 121 0 13 chr13 44218469 44218767 -57654402 - AluSq SINE Alu -17 296 3 1340 133 8 68 chr13 44218767 44218831 -57654338 - LTR8 LTR ERV1 -153 538 472 723 78 0 0 chr13 44218822 44218912 -57654257 - LTR8 LTR ERV1 -367 324 235 * 2920 87 72 5 chr13 44218913 44219290 -57653879 + MLT2A1 LTR ERVL 2 411 -33 504 0 0 0 chr13 44219290 44219346 -57653823 + (TA)n Simple_repeat Simple_repeat 2 57 0 2920 87 72 5 chr13 44219346 44219383 -57653786 + MLT2A1 LTR ERVL 411 444 0 5351 76 0 9 chr13 44219383 44219810 -57653359 + HERVL-A1 LTR ERVL 1 421 -5233 5227 97 54 4 chr13 44219810 44220553 -57652616 - LTR17 LTR ERV1 0 780 1 5351 76 0 9 chr13 44220553 44220822 -57652347 + HERVL-A1 LTR ERVL 421 691 -4963 * 25524 69 31 3 chr13 44220820 44224141 -57649028 + HERVL-A1 LTR ERVL 950 4365 -1289 320 48 0 0 chr13 44224141 44224183 -57648986 - LTR9 LTR ERV1 -570 42 1 1361 136 5 0 chr13 44224183 44224381 -57648788 - HUERS-P3 LTR ERV1 -1 8918 8720 600 181 8 15 chr13 44224535 44224668 -57648501 - MER51-int LTR ERV1 -2450 2565 2434 * 908 159 11 16 chr13 44224659 44224841 -57648328 - MER51-int LTR ERV1 -3692 4124 3944 17970 116 20 10 chr13 44224841 44227635 -57645534 - MER51-int LTR ERV1 -474 6944 1941 11264 169 115 28 chr13 44227648 44229465 -57643704 + L1P LINE L1 12 2149 -3997 1867 132 26 43 chr13 44229465 44229769 -57643400 + AluSg SINE Alu 1 299 -11 11264 169 115 28 chr13 44229769 44230705 -57642464 + L1P LINE L1 2149 3003 -3143 7321 91 5 0 chr13 44230703 44231714 -57641455 + L1P LINE L1 4069 5084 -1062 * 983 259 12 21 chr13 44231732 44232060 -57641109 + L1M4 LINE L1 932 1256 -5286 258 105 0 0 chr13 44233780 44233818 -57639351 + (T)n Simple_repeat Simple_repeat 1 38 0 1319 222 18 88 chr13 44234508 44234904 -57638265 - MLT1E1 LTR MaLR 0 654 287 2107 117 60 23 chr13 44235021 44235371 -57637798 - THE1B LTR MaLR 0 364 2 8501 103 4 2 chr13 44235372 44236516 -57636653 - THE1B-int LTR MaLR 0 1580 434 2182 119 54 23 chr13 44236550 44236903 -57636266 + THE1B LTR MaLR 1 364 0 3447 70 15 2 chr13 44236903 44237361 -57635808 + THE1B-int LTR MaLR 1 464 -1116 592 131 215 0 chr13 44237361 44237468 -57635701 - LTR57 LTR ERVL -281 130 1 218 329 114 33 chr13 44237510 44237893 -57635276 - L2 LINE L2 -190 3082 2641 482 291 35 47 chr13 44239559 44239731 -57633438 + MIR SINE MIR 59 228 -34 181 324 179 39 chr13 44239761 44239968 -57633201 + L2 LINE L2 2545 2780 -534 367 159 24 109 chr13 44240836 44241008 -57632161 + MER5C DNA MER1_type 75 324 0 905 279 81 12 chr13 44241150 44241473 -57631696 + MLT1G LTR MaLR 234 578 -12 422 205 111 26 chr13 44242227 44242344 -57630825 - MIR SINE MIR -12 250 124 298 195 188 29 chr13 44242686 44242809 -57630360 + MIR SINE MIR 32 172 -36 347 328 108 42 chr13 44243384 44243762 -57629407 + L2 LINE L2 2894 3296 -17 238 219 26 132 chr13 44243762 44243876 -57629293 - MIR SINE MIR -129 133 32 271 246 42 8 chr13 44243898 44243992 -57629177 - MIR SINE MIR -50 212 116 368 221 39 48 chr13 44244319 44244423 -57628746 - L2 LINE L2 -2 3270 3168 2463 67 0 3 chr13 44244614 44244912 -57628257 + AluSp SINE Alu 1 297 -16 21 89 0 0 chr13 44245036 44245092 -57628077 + AT_rich Low_complexity Low_complexity 1 56 0 657 233 178 0 chr13 44245448 44245628 -57627541 - MIR SINE MIR -10 252 41 381 313 23 16 chr13 44246006 44246134 -57627035 + MIR SINE MIR 124 252 -10 1922 135 4 0 chr13 44246568 44246842 -57626327 - AluSx SINE Alu -3 309 35 2254 111 0 0 chr13 44247006 44247313 -57625856 - AluSx SINE Alu -5 307 1 28 29 0 0 chr13 44247321 44247356 -57625813 + AT_rich Low_complexity Low_complexity 1 35 0 350 241 61 100 chr13 44248502 44248679 -57624490 - HAL1 LINE L1 -847 1660 1495 2073 146 0 0 chr13 44248679 44248974 -57624195 - AluSx SINE Alu -17 295 1 350 241 61 100 chr13 44248974 44249057 -57624112 - HAL1 LINE L1 -1012 1495 1410 41 48 0 0 chr13 44251486 44251548 -57621621 + AT_rich Low_complexity Low_complexity 1 62 0 281 57 0 0 chr13 44251550 44251585 -57621584 + U2 snRNA snRNA 1 35 -153 402 315 158 27 chr13 44251788 44252118 -57621051 + L2 LINE L2 2931 3303 -10 21 0 0 56 chr13 44252270 44252287 -57620882 + AT_rich Low_complexity Low_complexity 1 17 -17 2201 91 0 46 chr13 44252287 44252594 -57620575 - AluSq SINE Alu -20 293 1 21 0 0 56 chr13 44252594 44252612 -57620557 + AT_rich Low_complexity Low_complexity 17 34 0 188 277 117 51 chr13 44252612 44252749 -57620420 - L2 LINE L2 -2480 834 689 306 247 52 21 chr13 44253282 44253379 -57619790 - L2 LINE L2 -1336 1978 1879 194 119 0 71 chr13 44253780 44253822 -57619347 - L2 LINE L2 -8 3264 3226 22 0 0 0 chr13 44253960 44253982 -57619187 + AT_rich Low_complexity Low_complexity 1 22 0 225 385 0 0 chr13 44254065 44254148 -57619021 - MARNA DNA Mariner -412 174 92 284 341 82 30 chr13 44254567 44254702 -57618467 + L2 LINE L2 2603 2744 -570 393 136 0 0 chr13 44254737 44254796 -57618373 - Tigger5 DNA MER2_type -21 2302 2244 2237 110 0 0 chr13 44255176 44255467 -57617702 + AluSx SINE Alu 1 291 -21 1785 184 0 7 chr13 44255846 44256140 -57617029 + AluJo SINE Alu 1 292 -20 2105 136 0 7 chr13 44256461 44256769 -57616400 + AluJb SINE Alu 1 306 -6 354 241 18 80 chr13 44261098 44261210 -57611959 - L2 LINE L2 0 3313 3209 2177 123 3 0 chr13 44263347 44263657 -57609512 - AluSq SINE Alu 0 313 3 2496 74 10 0 chr13 44263909 44264219 -57608950 - AluSp SINE Alu 0 313 1 446 259 19 12 chr13 44265526 44265688 -57607481 + MER103 DNA DNA 4 166 0 22 35 0 0 chr13 44266016 44266045 -57607124 + AT_rich Low_complexity Low_complexity 1 29 0 1508 176 59 42 chr13 44266359 44266666 -57606503 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 44267866 44267887 -57605282 + AT_rich Low_complexity Low_complexity 1 21 0 247 314 0 41 chr13 44268051 44268172 -57604997 + CT-rich Low_complexity Low_complexity 2 117 0 22 56 0 0 chr13 44269285 44269321 -57603848 + AT_rich Low_complexity Low_complexity 1 36 0 616 160 246 12 chr13 44269605 44269769 -57603400 + MIR SINE MIR 15 217 -45 542 313 93 16 chr13 44270867 44271244 -57601925 + L1ME LINE L1 5414 5819 -302 266 200 0 31 chr13 44273050 44273115 -57600054 - MIR SINE MIR -16 246 184 216 262 38 115 chr13 44273411 44273594 -57599575 + MIR SINE MIR 88 256 -6 1810 138 57 46 chr13 44273849 44274219 -57598950 - THE1C LTR MaLR 0 375 2 7826 120 119 38 chr13 44274220 44275679 -57597490 - THE1C-int LTR MaLR 0 1580 4 1722 124 84 70 chr13 44275682 44276052 -57597117 - THE1C LTR MaLR 0 375 1 487 322 30 45 chr13 44277539 44277738 -57595431 - MIR SINE MIR -20 242 47 2512 53 13 0 chr13 44278037 44278338 -57594831 - AluY SINE Alu -6 305 1 579 325 172 47 chr13 44278638 44279115 -57594054 + L3 LINE CR1 798 1387 -190 2503 69 0 3 chr13 44279115 44279420 -57593749 + AluSp SINE Alu 1 304 -9 579 325 172 47 chr13 44279420 44279624 -57593545 + L3 LINE CR1 1387 1564 -13 2399 86 3 16 chr13 44280000 44280313 -57592856 - AluSc SINE Alu 0 309 1 345 323 183 0 chr13 44281355 44281519 -57591650 - MIR SINE MIR -50 212 19 2387 133 42 35 chr13 44281791 44282248 -57590921 + L1MA9 LINE L1 5853 6312 0 353 204 136 0 chr13 44282407 44282495 -57590674 + MIR SINE MIR 111 210 -52 26 0 0 0 chr13 44283784 44283810 -57589359 + AT_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr13 44284056 44284088 -57589081 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2067 130 0 7 chr13 44284221 44284505 -57588664 + AluSx SINE Alu 1 282 -30 2021 143 3 10 chr13 44285139 44285440 -57587729 + AluSx SINE Alu 1 299 -13 724 167 23 0 chr13 44285680 44285812 -57587357 - MER20 DNA MER1_type -1 218 84 2629 42 0 0 chr13 44286805 44287116 -57586053 - AluY SINE Alu 0 311 1 228 67 0 0 chr13 44289106 44289136 -57584033 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 2221 92 0 43 chr13 44289489 44289793 -57583376 - AluSq SINE Alu -17 296 6 396 90 60 0 chr13 44289793 44289860 -57583309 + Charlie5 DNA MER1_type 2515 2585 -27 6945 148 16 15 chr13 44290362 44290717 -57582452 + L1M1 LINE L1 4003 4356 -1948 1887 159 0 25 chr13 44290717 44291032 -57582137 - AluJb SINE Alu -5 307 1 6945 148 16 15 chr13 44291032 44292351 -57580818 + L1M1 LINE L1 4356 5673 -631 197 243 0 0 chr13 44293366 44293403 -57579766 + L2 LINE L2 3228 3264 -8 194 322 148 0 chr13 44294128 44294243 -57578926 - L2 LINE L2 -575 2739 2608 24 32 0 0 chr13 44295158 44295189 -57577980 + AT_rich Low_complexity Low_complexity 1 31 0 631 269 27 62 chr13 44295968 44296116 -57577053 - MLT1K LTR MaLR -10 578 441 2542 36 10 7 chr13 44296116 44296421 -57576748 - AluY SINE Alu -5 306 1 631 269 27 62 chr13 44296421 44296528 -57576641 - MLT1K LTR MaLR -147 441 332 289 322 0 26 chr13 44296888 44297003 -57576166 + GA-rich Low_complexity Low_complexity 3 114 0 305 279 96 10 chr13 44297153 44297257 -57575912 + MER5B DNA MER1_type 63 175 -3 389 315 65 22 chr13 44297823 44298007 -57575162 - MIR SINE MIR 0 262 71 21 0 0 0 chr13 44299935 44299956 -57573213 + AT_rich Low_complexity Low_complexity 1 21 0 899 283 47 6 chr13 44300204 44300522 -57572647 + L1MEc LINE L1 32 362 -6034 * 1777 200 58 54 chr13 44300521 44301291 -57571878 + L1ME1 LINE L1 4993 5763 -403 1054 152 152 62 chr13 44301304 44301427 -57571742 + AluJo SINE Alu 24 135 -177 2574 49 0 3 chr13 44301427 44301732 -57571437 + AluY SINE Alu 1 304 -7 1054 152 152 62 chr13 44301732 44301864 -57571305 + AluJo SINE Alu 135 302 -10 1273 203 31 60 chr13 44301871 44302289 -57570880 + L1ME1 LINE L1 5756 6161 -5 1859 180 0 3 chr13 44302338 44302643 -57570526 + AluJb SINE Alu 1 304 -8 11640 55 12 1 chr13 44302785 44304816 -57568353 + L1PA10 LINE L1 3888 5940 -228 2112 114 0 0 chr13 44304992 44305292 -57567877 - AluSg SINE Alu 0 300 1 414 286 9 18 chr13 44306019 44306131 -57567038 + MIR SINE MIR 70 180 -82 1106 228 120 11 chr13 44306132 44306514 -57566655 + MER90 LTR ERV1 9 432 -143 1180 209 154 48 chr13 44306514 44306950 -57566219 + MER74A LTR ERVL 1 482 -76 4299 91 11 19 chr13 44306978 44307624 -57565545 + LTR8 LTR ERV1 23 663 -28 1007 135 36 10 chr13 44307646 44307838 -57565331 + MER67C LTR ERV1 514 710 0 198 150 0 0 chr13 44308681 44308721 -57564448 + (T)n Simple_repeat Simple_repeat 1 40 0 400 273 102 6 chr13 44309215 44309391 -57563778 + MIR SINE MIR 5 197 -65 585 139 4 2 chr13 44309600 44309831 -57563338 + AluSx SINE Alu 1 280 -29 4095 142 114 9 chr13 44309920 44310666 -57562503 + LTR1B LTR ERV1 1 824 -2 243 189 0 0 chr13 44311501 44311554 -57561615 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 2436 177 76 66 chr13 44311698 44312382 -57560787 + LTR8 LTR ERV1 1 691 0 356 281 39 127 chr13 44312431 44312691 -57560478 + MIR SINE MIR 20 256 -6 570 141 0 10 chr13 44312741 44312840 -57560329 + MER4A LTR ERV1 1 98 -566 1668 114 165 73 chr13 44312840 44313209 -57559960 + MER4A LTR ERV1 261 663 -1 22 0 0 0 chr13 44313304 44313326 -57559843 + AT_rich Low_complexity Low_complexity 1 22 0 1059 100 14 0 chr13 44313508 44313648 -57559521 + AluSg/x SINE Alu 157 298 -14 240 283 272 0 chr13 44315474 44315566 -57557603 + L2 LINE L2 3139 3255 -17 1168 246 87 30 chr13 44315598 44315901 -57557268 + LTR16A LTR ERVL 1 336 -114 2136 109 7 14 chr13 44315901 44316058 -57557111 - AluSx SINE Alu -20 292 136 2386 95 0 0 chr13 44316058 44316364 -57556805 - AluSg1 SINE Alu -3 306 1 2136 109 7 14 chr13 44316364 44316500 -57556669 - AluSx SINE Alu -176 136 1 1168 246 87 30 chr13 44316500 44316622 -57556547 + LTR16A LTR ERVL 336 450 0 420 310 43 21 chr13 44316756 44316943 -57556226 + MIR3 SINE MIR 5 195 -13 195 219 24 0 chr13 44317466 44317507 -57555662 - L2 LINE L2 -6 3307 3266 1660 200 0 7 chr13 44317562 44317852 -57555317 + AluJo SINE Alu 1 288 -24 6553 65 9 3 chr13 44318095 44319008 -57554161 - L1PA8 LINE L1 -1 6171 5254 500 252 9 9 chr13 44320203 44320318 -57552851 + L2 LINE L2 3180 3294 -19 470 254 70 22 chr13 44320470 44320698 -57552471 - L1MC5 LINE L1 -44 7917 7679 4098 126 59 11 chr13 44320726 44321457 -57551712 - L1PA13 LINE L1 -1 6162 5397 * 4492 198 23 1 chr13 44321455 44322452 -57550717 + L1M LINE L1 4384 5401 -759 366 292 20 41 chr13 44322858 44323053 -57550116 + HAL1 LINE L1 2313 2503 -4 196 342 21 58 chr13 44323194 44323275 -57549894 + L2 LINE L2 2561 2643 -671 2045 165 26 5 chr13 44323275 44323657 -57549512 + MLT1B LTR MaLR 1 390 0 196 342 21 58 chr13 44323657 44323765 -57549404 + L2 LINE L2 2643 2743 -571 392 162 0 0 chr13 44323879 44323947 -57549222 + Tigger2 DNA MER2_type 2 69 -2649 265 182 39 13 chr13 44323937 44324014 -57549155 + Tigger2 DNA MER2_type 2273 2351 -367 * 1759 151 76 49 chr13 44324062 44324374 -57548795 + Tigger2 DNA MER2_type 2298 2625 -93 2437 90 0 0 chr13 44324374 44324674 -57548495 - AluSx SINE Alu -12 300 1 1759 151 76 49 chr13 44324674 44324771 -57548398 + Tigger2 DNA MER2_type 2625 2718 0 224 308 0 0 chr13 44325085 44325137 -57548032 + L2 LINE L2 3242 3293 -20 249 318 11 11 chr13 44325387 44325475 -57547694 - MIR3 SINE MIR -1 207 120 269 289 40 0 chr13 44326562 44326638 -57546531 - L2 LINE L2 -38 3275 3197 3026 117 25 4 chr13 44326808 44327286 -57545883 + L1PA16 LINE L1 5668 6155 -11 2015 102 80 0 chr13 44327305 44327580 -57545589 + AluSq SINE Alu 1 297 -16 195 162 0 0 chr13 44327593 44327630 -57545539 + (TA)n Simple_repeat Simple_repeat 2 38 0 1620 265 161 6 chr13 44327675 44328220 -57544949 - L2 LINE L2 -281 3032 2375 2006 143 0 10 chr13 44328220 44328520 -57544649 + AluSx SINE Alu 1 297 -15 1620 265 161 6 chr13 44328520 44328611 -57544558 - L2 LINE L2 -938 2375 2299 256 354 83 28 chr13 44328907 44329051 -57544118 + L2 LINE L2 3119 3270 -2 527 259 135 0 chr13 44329253 44329413 -57543756 + MER5A DNA MER1_type 4 188 -1 894 216 6 0 chr13 44329433 44329614 -57543555 + MER58A DNA MER1_type 40 221 -3 2092 144 0 10 chr13 44329704 44330017 -57543152 - AluSx SINE Alu -2 310 1 23 0 0 0 chr13 44330173 44330196 -57542973 + AT_rich Low_complexity Low_complexity 1 23 0 2073 104 4 0 chr13 44331549 44331828 -57541341 - AluSx SINE Alu -4 308 29 659 217 89 15 chr13 44331931 44332288 -57540881 - MLT1C LTR MaLR -19 448 10 2085 119 0 0 chr13 44332704 44332982 -57540187 - AluSx SINE Alu -34 278 1 1274 256 97 29 chr13 44333456 44334179 -57538990 - HAL1 LINE L1 -725 1782 1011 1082 299 113 38 chr13 44334246 44335084 -57538085 - HAL1 LINE L1 -1599 908 8 427 198 125 0 chr13 44336017 44336113 -57537056 + MER81 DNA DNA 6 113 -1 470 233 0 0 chr13 44336547 44336637 -57536532 + 5S rRNA rRNA 1 90 -31 237 330 68 0 chr13 44337250 44337338 -57535831 - MIR SINE MIR -149 113 20 2271 93 0 0 chr13 44338326 44338616 -57534553 - AluSg SINE Alu -20 290 1 565 192 15 23 chr13 44339718 44339848 -57533321 - FLAM_A SINE Alu 0 142 14 213 211 115 0 chr13 44340735 44340787 -57532382 + MER5A DNA MER1_type 7 64 -125 1508 217 95 39 chr13 44340789 44341306 -57531863 + LTR55 LTR ERV 1 546 -2 608 252 8 0 chr13 44341306 44341433 -57531736 + MER5A DNA MER1_type 62 189 0 2390 185 60 8 chr13 44341516 44342014 -57531155 - MLT1F LTR MaLR 0 542 19 346 326 188 26 chr13 44342329 44342393 -57530776 + L2 LINE L2 2297 2349 -965 2517 170 19 0 chr13 44342393 44342811 -57530358 - MSTB LTR MaLR 0 426 1 346 326 188 26 chr13 44342811 44343050 -57530119 + L2 LINE L2 2349 2649 -665 248 361 142 0 chr13 44343035 44343204 -57529965 - L2 LINE L2 -620 2694 2502 * 377 330 65 97 chr13 44343397 44343748 -57529421 + L2 LINE L2 2933 3272 0 227 159 23 0 chr13 44343893 44343937 -57529232 - L2 LINE L2 -1 3312 3268 896 172 61 0 chr13 44344327 44344490 -57528679 + MER63A DNA MER1_type 1 173 -37 2418 65 3 7 chr13 44346806 44347112 -57526057 - AluY SINE Alu -4 307 3 2511 66 3 3 chr13 44347684 44347989 -57525180 + AluSp SINE Alu 1 305 -8 191 219 0 0 chr13 44348273 44348314 -57524855 - L2 LINE L2 -1 3312 3272 206 136 152 61 chr13 44348528 44348594 -57524575 - MIR SINE MIR -74 188 117 2046 113 27 3 chr13 44349060 44349353 -57523816 + AluSx SINE Alu 1 300 -12 563 213 180 0 chr13 44349782 44349932 -57523237 + MER5A DNA MER1_type 13 189 0 357 289 145 24 chr13 44350266 44350432 -57522737 + MIR SINE MIR 60 245 -17 431 256 77 24 chr13 44350778 44350946 -57522223 + MER5B DNA MER1_type 1 177 -1 402 286 16 8 chr13 44351556 44351682 -57521487 + MIR SINE MIR 133 259 -3 24 0 0 0 chr13 44351959 44351983 -57521186 + AT_rich Low_complexity Low_complexity 1 24 0 293 322 161 22 chr13 44352089 44352319 -57520850 + L2 LINE L2 2487 2748 -566 21 0 0 0 chr13 44352495 44352516 -57520653 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr13 44352863 44352914 -57520255 + AT_rich Low_complexity Low_complexity 1 51 0 5419 162 42 26 chr13 44352928 44354264 -57518905 - L1MA8 LINE L1 -30 6497 5109 2369 99 3 6 chr13 44354264 44354576 -57518593 + AluSp SINE Alu 1 311 -2 5419 162 42 26 chr13 44354576 44355393 -57517776 - L1MA8 LINE L1 -1418 5109 4306 2648 206 59 98 chr13 44355389 44356850 -57516319 - L1MA8 LINE L1 -2619 3763 2408 * 1676 262 98 17 chr13 44356915 44357065 -57516104 - L1MA8 LINE L1 -4296 2086 1950 2178 92 10 10 chr13 44357065 44357360 -57515809 + AluSq SINE Alu 1 295 -18 1676 262 98 17 chr13 44357360 44358061 -57515108 - L1MA8 LINE L1 -4432 1950 1108 413 263 0 17 chr13 44358076 44358194 -57514975 - L1MA8 LINE L1 -5771 532 417 1208 296 74 19 chr13 44358266 44358979 -57514190 - L1ME3A LINE L1 -233 5937 5265 303 28 0 0 chr13 44358979 44359015 -57514154 + (TG)n Simple_repeat Simple_repeat 2 37 0 1208 296 74 19 chr13 44359015 44359681 -57513488 - L1ME3A LINE L1 -905 5265 4476 337 220 63 73 chr13 44361059 44361165 -57512004 - L1 LINE L1 -1678 4468 4363 2081 130 3 3 chr13 44361165 44361464 -57511705 + AluSg SINE Alu 1 299 -11 337 220 63 73 chr13 44361464 44361548 -57511621 - L1 LINE L1 -1783 4363 4280 599 233 161 5 chr13 44361574 44361797 -57511372 + MIR SINE MIR 3 260 -2 403 282 65 31 chr13 44362538 44363153 -57510016 - L1MEd LINE L1 -4864 1255 562 2240 103 0 0 chr13 44363581 44363873 -57509296 - AluSg SINE Alu -18 292 1 439 317 54 31 chr13 44363897 44364121 -57509048 - MIR SINE MIR 0 262 34 265 256 23 0 chr13 44364232 44364318 -57508851 - L1MC4 LINE L1 -106 7936 7849 261 0 0 0 chr13 44365390 44365419 -57507750 + (CA)n Simple_repeat Simple_repeat 2 30 0 3078 103 15 9 chr13 44366054 44366512 -57506657 - L1PA10 LINE L1 -5 6163 5703 392 286 113 0 chr13 44367488 44367621 -57505548 + MIR SINE MIR 40 187 -75 1752 161 29 71 chr13 44367680 44367905 -57505264 - MSTD LTR MaLR -2 394 192 2035 130 36 0 chr13 44367905 44368206 -57504963 - AluSx SINE Alu 0 312 1 1752 161 29 71 chr13 44368206 44368391 -57504778 - MSTD LTR MaLR -204 192 1 424 208 63 31 chr13 44370953 44371112 -57502057 - MER106B DNA MER1_type 0 1059 896 1496 187 50 47 chr13 44371139 44371503 -57501666 + MLT1A1 LTR MaLR 1 365 0 194 404 103 13 chr13 44371535 44371691 -57501478 - L2 LINE L2 -186 3086 2917 3960 135 20 12 chr13 44371691 44371868 -57501301 + MER39B LTR ERV1 1 175 -478 2258 101 7 0 chr13 44371868 44372155 -57501014 + AluSg SINE Alu 1 289 -21 3960 135 20 12 chr13 44372155 44372623 -57500546 + MER39B LTR ERV1 175 651 -2 329 317 142 17 chr13 44372974 44373133 -57500036 + MIR SINE MIR 11 185 -59 1417 188 51 20 chr13 44373201 44373286 -57499883 + MLT1A1 LTR MaLR 4 85 -280 1804 203 28 18 chr13 44373286 44373676 -57499493 + MSTD LTR MaLR 1 394 -2 1417 188 51 20 chr13 44373676 44373941 -57499228 + MLT1A1 LTR MaLR 85 365 0 3125 265 37 56 chr13 44373950 44375157 -57498012 + ERVL-E LTR ERVL 1375 2558 -3206 928 266 5 69 chr13 44375158 44375513 -57497656 + MLT2C1 LTR ERVL 23 430 -34 1012 297 28 40 chr13 44375534 44375962 -57497207 + ERVL-E LTR ERVL 2583 3005 -2759 * 4207 252 64 55 chr13 44375960 44376542 -57496627 + ERVL-E LTR ERVL 3156 3731 -2033 2755 60 11 0 chr13 44376542 44376890 -57496279 + L1PA6 LINE L1 5794 6145 -9 4207 252 64 55 chr13 44376890 44377731 -57495438 + ERVL-E LTR ERVL 3731 4597 -1167 2138 112 7 10 chr13 44377731 44378036 -57495133 - AluSc SINE Alu -5 304 1 4207 252 64 55 chr13 44378036 44378207 -57494962 + ERVL-E LTR ERVL 4597 4765 -999 812 265 125 37 chr13 44378238 44378725 -57494444 + ERVL-E LTR ERVL 4970 5499 -265 974 177 0 19 chr13 44378746 44378904 -57494265 + FRAM SINE Alu 1 155 -21 919 149 119 0 chr13 44379059 44379253 -57493916 + MER46A DNA MER2_type 5 221 -15 284 313 10 0 chr13 44379261 44379360 -57493809 + ERVL-E LTR ERVL 5654 5753 -11 2022 248 48 48 chr13 44379364 44379988 -57493181 + MLT2E LTR ERVL 2 625 -3 986 277 123 16 chr13 44379991 44380414 -57492755 + L2 LINE L2 1580 2047 -1267 18351 152 28 16 chr13 44380427 44385029 -57488140 - L1P3 LINE L1 -1737 4724 2 186 43 0 0 chr13 44385203 44385226 -57487943 + (T)n Simple_repeat Simple_repeat 1 23 0 1679 164 23 0 chr13 44385348 44385652 -57487517 - L1MC1 LINE L1 -5 6328 6018 1410 293 56 63 chr13 44385663 44387341 -57485828 + L1PA12 LINE L1 1 2219 -5362 725 190 121 0 chr13 44387325 44387499 -57485670 + L1PA16 LINE L1 5972 6166 0 * 1147 127 32 124 chr13 44387501 44387599 -57485570 - L1MC1 LINE L1 -310 6034 5929 590 124 0 0 chr13 44387599 44387688 -57485481 - L1MC1 LINE L1 0 6333 6245 1147 127 32 124 chr13 44387688 44387904 -57485265 - L1MC1 LINE L1 -415 5929 5749 264 302 0 0 chr13 44387909 44387972 -57485197 + L2 LINE L2 3188 3250 -22 2414 69 0 7 chr13 44387974 44388278 -57484891 - AluY SINE Alu -9 302 1 11879 202 31 36 chr13 44388302 44388640 -57484529 - L1PA16 LINE L1 -8 6861 6523 2293 110 0 7 chr13 44388640 44388948 -57484221 - AluSg1 SINE Alu 0 309 4 11879 202 31 36 chr13 44388948 44393068 -57480101 - L1PA16 LINE L1 -346 6523 2784 2080 131 14 0 chr13 44393068 44393358 -57479811 - AluSx SINE Alu -18 294 1 11879 202 31 36 chr13 44393358 44396124 -57477045 - L1PA16 LINE L1 -4085 2784 6 181 395 25 0 chr13 44396319 44396400 -57476769 + L2 LINE L2 2567 2649 -665 306 73 0 0 chr13 44397206 44397247 -57475922 + (CA)n Simple_repeat Simple_repeat 1 41 0 268 283 141 0 chr13 44397820 44397919 -57475250 + MIR SINE MIR 32 144 -64 22 35 0 0 chr13 44398232 44398261 -57474908 + AT_rich Low_complexity Low_complexity 1 29 0 270 219 57 73 chr13 44398790 44398913 -57474256 - L1ME3A LINE L1 -88 6082 5962 1143 231 142 58 chr13 44399063 44399804 -57473365 - L1MC5 LINE L1 -472 7489 6687 1587 185 31 39 chr13 44399900 44400256 -57472913 + MLT1A1 LTR MaLR 13 365 0 24 0 0 0 chr13 44400372 44400396 -57472773 + AT_rich Low_complexity Low_complexity 1 24 0 2177 142 31 0 chr13 44400401 44400754 -57472415 - THE1B LTR MaLR 0 364 1 4865 150 54 25 chr13 44400754 44401432 -57471737 - L1MA5A LINE L1 -14 6283 5626 2293 119 0 0 chr13 44401432 44401727 -57471442 - AluSg SINE Alu -15 295 1 4865 150 54 25 chr13 44401727 44402016 -57471153 - L1MA5A LINE L1 -671 5626 5347 318 98 0 0 chr13 44402016 44402067 -57471102 + (CTTG)n Simple_repeat Simple_repeat 2 52 0 4865 150 54 25 chr13 44402067 44402418 -57470751 - L1MA5A LINE L1 -950 5347 4943 780 295 51 30 chr13 44405909 44406282 -57466887 + MLT1J1 LTR MaLR 58 438 -8 201 295 154 0 chr13 44406515 44406593 -57466576 - L2 LINE L2 -3 3310 3221 24 0 0 0 chr13 44407729 44407753 -57465416 + AT_rich Low_complexity Low_complexity 1 24 0 275 261 29 14 chr13 44410205 44410274 -57462895 + L2 LINE L2 2685 2754 -560 335 281 55 9 chr13 44410655 44410807 -57462362 - L1M3 LINE L1 -691 5477 5318 698 94 12 53 chr13 44410807 44410977 -57462192 + (TTCC)n Simple_repeat Simple_repeat 3 165 0 875 218 0 0 chr13 44410998 44411145 -57462024 - FRAM SINE Alu -29 147 1 317 304 131 10 chr13 44411232 44411794 -57461375 - L1M3 LINE L1 -933 5213 4573 392 310 0 70 chr13 44412240 44412398 -57460771 - MIR3 SINE MIR -5 203 57 1112 109 17 0 chr13 44413531 44413706 -57459463 - L1MA5A LINE L1 -2 6295 6118 2169 191 2 5 chr13 44414017 44414414 -57458755 - MLT2C2 LTR ERVL -68 396 1 313 300 0 12 chr13 44414579 44414659 -57458510 + L2 LINE L2 3137 3215 -57 1625 124 4 8 chr13 44415063 44415321 -57457848 + L1PB4 LINE L1 5897 6153 -3 255 388 29 0 chr13 44415754 44415857 -57457312 - MIR SINE MIR -137 125 20 458 305 109 14 chr13 44416077 44416287 -57456882 - MIR SINE MIR -31 231 2 269 340 43 74 chr13 44416297 44416384 -57456785 - L2 LINE L2 0 3272 3191 4197 127 50 19 chr13 44416384 44417122 -57456047 - L1PA16 LINE L1 -1 6165 5405 269 340 43 74 chr13 44417122 44417196 -57455973 - L2 LINE L2 -81 3191 3116 315 340 12 74 chr13 44417341 44417585 -57455584 - L2 LINE L2 -218 3054 2826 2134 162 29 0 chr13 44417762 44418175 -57454994 - L1P LINE L1 -3476 2670 2246 3752 103 11 21 chr13 44418175 44418734 -57454435 + L1PA13 LINE L1 5600 6155 -8 181 331 221 7 chr13 44419054 44419190 -57453979 - MIR SINE MIR -45 217 53 22 0 0 0 chr13 44420988 44421010 -57452159 + AT_rich Low_complexity Low_complexity 1 22 0 486 286 122 25 chr13 44421246 44421491 -57451678 + MLT1K LTR MaLR 307 575 -13 2045 176 112 48 chr13 44421691 44422238 -57450931 + L1MD3 LINE L1 7404 7985 -10 194 219 0 24 chr13 44422768 44422809 -57450360 + L2 LINE L2 3257 3296 -17 652 264 87 17 chr13 44422901 44423132 -57450037 - MIR SINE MIR -14 248 2 5107 90 4 11 chr13 44423200 44423942 -57449227 + L1P LINE L1 1 737 -5409 591 143 0 0 chr13 44424980 44425078 -57448091 - L1P4 LINE L1 -631 5535 5438 1466 163 43 0 chr13 44425078 44425332 -57447837 + L1PA16 LINE L1 5885 6153 -13 23 0 0 0 chr13 44425343 44425366 -57447803 + AT_rich Low_complexity Low_complexity 1 23 0 530 266 144 19 chr13 44425366 44425622 -57447547 - MLT1J1 LTR MaLR -116 330 43 477 267 97 12 chr13 44425635 44425800 -57447369 - MIR SINE MIR -70 192 14 462 209 11 0 chr13 44425908 44425999 -57447170 - Tigger7 DNA MER2_type 0 2487 2396 * 2441 199 48 0 chr13 44425998 44426496 -57446673 - Tigger7 DNA MER2_type -1965 522 1 304 267 80 83 chr13 44426671 44426950 -57446219 - L1MC/D LINE L1 -2132 5676 5397 2381 220 108 19 chr13 44426950 44427582 -57445587 + MER76 LTR ERV 1 688 0 304 267 80 83 chr13 44427582 44427725 -57445444 - L1MC/D LINE L1 -2411 5397 5255 359 276 171 44 chr13 44427942 44428286 -57444883 - L1MC/D LINE L1 -1127 5019 4632 453 292 0 0 chr13 44428369 44428540 -57444629 + (TA)n Simple_repeat Simple_repeat 2 172 0 228 236 45 22 chr13 44428540 44428629 -57444540 - L1MC4 LINE L1 -1337 6705 6615 228 269 0 65 chr13 44428642 44428735 -57444434 - L1MC4 LINE L1 -1341 6701 6615 237 281 23 7 chr13 44429021 44429147 -57444022 + MIR SINE MIR 8 224 -38 194 333 163 31 chr13 44429767 44429896 -57443273 + L2 LINE L2 2598 2743 -571 226 338 30 82 chr13 44430029 44430298 -57442871 + L2 LINE L2 3018 3272 0 245 346 15 23 chr13 44430362 44430492 -57442677 + MIR3 SINE MIR 1 129 -79 31961 46 1 3 chr13 44431045 44436100 -57437069 + L1PA3 LINE L1 1110 6155 0 189 0 0 0 chr13 44436446 44436467 -57436702 + (CA)n Simple_repeat Simple_repeat 1 21 0 1865 149 48 36 chr13 44437975 44438331 -57434838 + THE1B LTR MaLR 1 360 -4 243 247 67 45 chr13 44439324 44439413 -57433756 + MER81 DNA DNA 2 92 -22 442 300 167 0 chr13 44440620 44440770 -57432399 + MER5A DNA MER1_type 9 183 -6 318 314 41 21 chr13 44441660 44441809 -57431360 - MER5A DNA MER1_type -8 170 16 1990 143 0 0 chr13 44442185 44442465 -57430704 - AluJb SINE Alu -31 281 2 252 122 0 0 chr13 44442677 44442718 -57430451 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 313 112 21 chr13 44445372 44445605 -57427564 - MIR SINE MIR 0 262 9 21 0 0 0 chr13 44445685 44445706 -57427463 + AT_rich Low_complexity Low_complexity 1 21 0 2123 110 0 0 chr13 44445746 44446037 -57427132 + AluSx SINE Alu 1 291 -21 348 88 0 0 chr13 44447021 44447078 -57426091 + (T)n Simple_repeat Simple_repeat 1 57 0 195 42 0 0 chr13 44447271 44447295 -57425874 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 573 245 0 36 chr13 44447520 44447659 -57425510 - LTR28 LTR ERV1 0 1020 887 2040 204 230 73 chr13 44447662 44448539 -57424630 - LTR28 LTR ERV1 -37 983 1 230 200 0 18 chr13 44449621 44449676 -57423493 + T-rich Low_complexity Low_complexity 5 58 0 195 145 16 32 chr13 44450271 44450333 -57422836 + GA-rich Low_complexity Low_complexity 1 61 0 287 337 10 10 chr13 44451103 44451305 -57421864 + L1M4 LINE L1 4244 4445 -1701 268 244 92 42 chr13 44451602 44451721 -57421448 + L1ME4a LINE L1 5954 6078 -43 244 318 23 23 chr13 44454977 44455065 -57418104 - L2 LINE L2 -16 3256 3169 607 305 98 64 chr13 44455674 44455911 -57417258 - ERVL LTR ERVL -708 5056 4828 2663 29 3 0 chr13 44455911 44456221 -57416948 + AluY SINE Alu 1 311 0 607 305 98 64 chr13 44456221 44457209 -57415960 - ERVL LTR ERVL -936 4828 3727 2020 157 89 89 chr13 44459012 44459527 -57413642 + MLT2B2 LTR ERVL 1 515 0 296 299 44 88 chr13 44459765 44459902 -57413267 - L2 LINE L2 -5 3267 3137 2193 139 19 27 chr13 44460083 44460450 -57412719 + THE1B LTR MaLR 1 364 0 5449 117 2 39 chr13 44460468 44461079 -57412090 - THE1-int LTR MaLR -516 1064 432 7600 29 0 0 chr13 44461079 44462056 -57411113 - L1PA3 LINE L1 -3 6152 5175 13799 23 0 0 chr13 44462065 44464450 -57408719 - L1PA2 LINE L1 0 6155 3771 5449 117 2 39 chr13 44464450 44464709 -57408460 - THE1-int LTR MaLR -1156 424 216 3861 86 0 4 chr13 44464704 44465225 -57407944 + THE1B-int LTR MaLR 1057 1575 -5 * 2172 131 19 45 chr13 44465229 44465603 -57407566 + THE1B LTR MaLR 1 364 0 195 330 45 23 chr13 44465669 44465757 -57407412 - L2 LINE L2 -309 2963 2874 893 321 93 42 chr13 44465856 44466380 -57406789 - L2 LINE L2 -559 2755 2205 2663 129 14 0 chr13 44466386 44466803 -57406366 - MER57B LTR ERV1 -11 423 1 233 315 117 30 chr13 44466803 44467000 -57406169 - L2 LINE L2 -1108 2206 1993 198 221 0 144 chr13 44467003 44467107 -57406062 - L2 LINE L2 -1605 1709 1621 454 292 20 1 chr13 44467446 44467665 -57405504 - ERVL LTR ERVL -287 5367 5145 389 308 0 15 chr13 44467881 44468011 -57405158 - ERVL LTR ERVL -829 4935 4808 1176 310 60 19 chr13 44468086 44468518 -57404651 + LTR16A LTR ERVL 1 450 0 714 321 50 0 chr13 44468541 44468803 -57404366 - ERVL LTR ERVL -1092 4672 4398 204 125 42 21 chr13 44468803 44468851 -57404318 + (TA)n Simple_repeat Simple_repeat 1 49 0 273 241 85 40 chr13 44469285 44469484 -57403685 + L1ME4a LINE L1 5912 6119 -2 23 33 0 0 chr13 44472734 44472764 -57400405 + AT_rich Low_complexity Low_complexity 1 30 0 2138 123 7 7 chr13 44473491 44473791 -57399378 + AluSx SINE Alu 6 305 -7 2127 118 3 7 chr13 44474349 44474655 -57398514 - AluSq SINE Alu -8 305 1 761 281 28 9 chr13 44476110 44476327 -57396842 - MIR SINE MIR -28 234 14 464 300 201 9 chr13 44476571 44476894 -57396275 - MLT1J2 LTR MaLR -1 449 65 279 323 115 15 chr13 44478940 44479070 -57394099 - MIR SINE MIR 0 262 120 741 213 35 5 chr13 44480255 44480452 -57392717 - Charlie4 DNA MER1_type 0 1961 1759 * 809 229 62 4 chr13 44480451 44480678 -57392491 - Charlie4 DNA MER1_type -1704 257 18 414 294 116 14 chr13 44480873 44481165 -57392004 + HAL1b LINE L1 986 1307 -41 3283 100 67 3 chr13 44481177 44481894 -57391275 - L1PA14 LINE L1 -1 7598 6722 * 14014 182 18 26 chr13 44481893 44485132 -57388037 - L1PA14 LINE L1 -1601 5983 2751 2124 138 0 3 chr13 44485132 44485437 -57387732 - AluSq SINE Alu -9 304 1 14014 182 18 26 chr13 44485437 44485893 -57387276 - L1PA14 LINE L1 -4833 2751 2293 231 255 0 0 chr13 44486008 44486055 -57387114 + MER115 DNA AcHobo 1 47 -646 188 355 32 0 chr13 44486059 44486121 -57387048 - L2 LINE L2 -48 3265 3202 25 31 0 0 chr13 44486783 44486815 -57386354 + AT_rich Low_complexity Low_complexity 1 32 0 297 284 53 11 chr13 44486856 44486951 -57386218 + MIR SINE MIR 110 208 -54 321 111 0 0 chr13 44486954 44486999 -57386170 - FAM SINE Alu -10 165 121 1568 190 105 0 chr13 44487043 44487348 -57385821 - MER1B DNA MER1_type 0 337 1 241 286 132 0 chr13 44487359 44487450 -57385719 - L2 LINE L2 -12 3301 3199 499 248 13 25 chr13 44487865 44487881 -57385288 - L1MA10 LINE L1 0 6334 6319 1431 205 150 92 chr13 44487881 44488456 -57384713 - L1ME2 LINE L1 -8 6156 5549 2507 97 28 0 chr13 44488533 44488895 -57384274 - L1PA13 LINE L1 0 6163 5792 336 48 0 0 chr13 44488896 44488938 -57384231 + (TG)n Simple_repeat Simple_repeat 2 43 0 267 228 22 0 chr13 44488938 44489030 -57384139 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 536 80 23 11 chr13 44489030 44489041 -57384128 - L1PA13 LINE L1 -369 5792 5783 297 0 0 0 chr13 44489041 44489074 -57384095 + (TA)n Simple_repeat Simple_repeat 2 34 0 536 80 23 11 chr13 44489074 44489150 -57384019 - L1PA13 LINE L1 -378 5783 5704 * 872 211 12 0 chr13 44489145 44489311 -57383858 - L1ME2 LINE L1 -606 5560 5393 * 4276 66 11 3 chr13 44489309 44489923 -57383246 - L1P LINE L1 -1267 4879 3996 3774 63 0 0 chr13 44489949 44490425 -57382744 - L1PA7 LINE L1 -3 6151 5676 1531 245 72 3 chr13 44490448 44491089 -57382080 - L1ME2 LINE L1 -2945 3201 2517 1335 248 52 9 chr13 44491110 44491529 -57381640 - L1M4 LINE L1 -1083 5063 4627 2803 157 55 6 chr13 44491553 44492081 -57381088 - L1PA16 LINE L1 -5 6161 5608 11498 236 41 16 chr13 44492094 44495485 -57377684 - L1PA16 LINE L1 -709 5457 1991 1437 256 63 24 chr13 44495490 44495854 -57377315 - L1M4 LINE L1 -1538 4608 4213 1883 154 24 27 chr13 44495854 44496230 -57376939 - THE1C LTR MaLR 0 375 1 1437 256 63 24 chr13 44496230 44496419 -57376750 - L1M4 LINE L1 -1933 4213 4033 495 0 0 0 chr13 44496420 44496475 -57376694 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1745 88 0 0 chr13 44496477 44496694 -57376475 - AluY SINE Alu -28 283 67 13479 180 49 52 chr13 44496708 44497478 -57375691 - L1P4 LINE L1 -430 5731 4960 2001 150 3 3 chr13 44497478 44497784 -57375385 + AluSx SINE Alu 3 308 -4 13479 180 49 52 chr13 44497784 44498291 -57374878 - L1P4 LINE L1 -1201 4960 4453 1101 112 0 0 chr13 44498291 44498443 -57374726 - AluSg/x SINE Alu 0 310 159 13479 180 49 52 chr13 44498443 44500561 -57372608 - L1P4 LINE L1 -1708 4453 2330 2050 148 3 0 chr13 44500561 44500858 -57372311 - AluSx SINE Alu -14 298 1 13479 180 49 52 chr13 44500858 44501077 -57372092 - L1P4 LINE L1 -3831 2330 2112 2108 123 3 3 chr13 44501077 44501379 -57371790 - AluSg SINE Alu -8 302 1 13479 180 49 52 chr13 44501379 44501518 -57371651 - L1P4 LINE L1 -4049 2112 1843 2057 206 18 28 chr13 44501487 44501991 -57371178 - L1PA15-16 LINE L1 -4036 3548 3050 * 5842 144 48 1 chr13 44501999 44502944 -57370225 - L1PA15-16 LINE L1 -4812 2769 1781 3822 193 45 8 chr13 44502940 44504006 -57369163 - L1MB1 LINE L1 -221 5947 4828 * 303 175 0 0 chr13 44504006 44504063 -57369106 + (TA)n Simple_repeat Simple_repeat 1 57 0 491 194 6 144 chr13 44504064 44504124 -57369045 - L1MB1 LINE L1 -1624 4522 4455 2112 138 0 0 chr13 44504124 44504429 -57368740 - AluSx SINE Alu -7 305 1 491 194 6 144 chr13 44504429 44504548 -57368621 - L1MB1 LINE L1 -1691 4455 4368 2165 117 7 0 chr13 44505120 44505429 -57367740 + AluSx SINE Alu 1 311 -1 299 104 0 0 chr13 44505816 44505864 -57367305 + L1MA3 LINE L1 6258 6305 0 22 56 0 0 chr13 44505864 44505900 -57367269 + AT_rich Low_complexity Low_complexity 1 36 0 205 319 67 67 chr13 44506135 44506270 -57366899 - L2 LINE L2 -1 3271 3137 430 299 29 7 chr13 44507074 44507211 -57365958 + MIR SINE MIR 52 191 -71 244 170 91 212 chr13 44508517 44508682 -57364487 - MLT1H LTR MaLR 0 549 405 707 110 0 0 chr13 44509873 44509973 -57363196 + HY3 scRNA scRNA 1 100 -1 316 314 107 0 chr13 44510755 44510876 -57362293 + L3 LINE CR1 1313 1446 -131 249 247 253 32 chr13 44511190 44511344 -57361825 + MIR3 SINE MIR 11 198 -10 363 361 149 26 chr13 44511714 44512063 -57361106 + L2 LINE L2 2843 3234 -38 295 347 49 14 chr13 44512085 44512229 -57360940 + MIR3 SINE MIR 50 198 -10 659 255 59 20 chr13 44512363 44512567 -57360602 - MIR SINE MIR -34 228 17 254 250 0 17 chr13 44514120 44514180 -57358989 + (TG)n Simple_repeat Simple_repeat 2 60 0 2393 84 3 0 chr13 44516051 44516360 -57356809 - AluY SINE Alu -1 310 1 210 143 0 0 chr13 44516782 44516817 -57356352 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 184 0 0 chr13 44516917 44516955 -57356214 + (CATA)n Simple_repeat Simple_repeat 3 40 0 1021 211 116 50 chr13 44516975 44517293 -57355876 - MLT2D LTR ERVL -56 341 3 274 237 0 17 chr13 44517312 44517371 -57355798 - MER69 DNA AcHobo 0 2526 2469 220 340 117 0 chr13 44517642 44517736 -57355433 + L2 LINE L2 3199 3303 -10 473 281 117 67 chr13 44517921 44518341 -57354828 - MLT1J1 LTR MaLR -1 445 5 242 246 98 0 chr13 44518595 44518656 -57354513 - MIR SINE MIR -86 176 110 854 209 211 41 chr13 44519413 44519787 -57353382 - MER69 DNA AcHobo -90 2436 1975 2188 136 0 0 chr13 44519787 44520097 -57353072 - AluSg SINE Alu 0 310 1 854 209 211 41 chr13 44520097 44520162 -57353007 - MER69 DNA AcHobo -551 1975 1922 195 69 0 0 chr13 44520164 44520193 -57352976 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 43275 43 4 2 chr13 44520193 44526299 -57346870 - L1PA3 LINE L1 -13 6142 22 1162 204 111 35 chr13 44526323 44526745 -57346424 - MER69 DNA AcHobo -621 1905 1452 549 322 83 23 chr13 44526735 44526999 -57346170 - MER69 DNA AcHobo -2246 280 1 * 2137 173 75 39 chr13 44527163 44527654 -57345515 - MER67D LTR ERV1 -5 509 1 498 304 47 12 chr13 44527869 44528040 -57345129 - MLT1I LTR MaLR -232 177 1 400 307 73 27 chr13 44528422 44528572 -57344597 + L2 LINE L2 3115 3271 -1 297 331 103 6 chr13 44528595 44528770 -57344399 + L3b LINE CR1 1303 1494 -89 340 352 64 28 chr13 44532043 44532293 -57340876 + MIR SINE MIR 4 262 0 394 224 59 59 chr13 44532533 44532703 -57340466 + MER96B DNA MER1_type? 3 172 -245 4054 35 4 0 chr13 44532827 44533311 -57339858 - L1PA4 LINE L1 -5 6150 5665 5380 222 46 15 chr13 44534321 44536868 -57336301 - L1MD1 LINE L1 -24 6612 3981 599 155 17 0 chr13 44536885 44537001 -57336168 + CT-rich Low_complexity Low_complexity 2 119 0 589 144 0 0 chr13 44537002 44537092 -57336077 - HY4 scRNA scRNA -2 91 2 447 322 25 4 chr13 44537092 44537331 -57335838 - L1MD1 LINE L1 -2572 3968 3725 415 104 0 0 chr13 44537336 44537403 -57335766 - L1MA7 LINE L1 -1 6290 6224 912 200 69 8 chr13 44537408 44537761 -57335408 - L1MD1 LINE L1 -3720 2820 2404 2169 135 3 0 chr13 44537761 44538072 -57335097 - AluJb SINE Alu 0 312 1 912 200 69 8 chr13 44538072 44538208 -57334961 - L1MD1 LINE L1 -4136 2404 2278 1248 201 22 15 chr13 44538208 44538482 -57334687 - AluJo SINE Alu -5 307 32 216 0 0 0 chr13 44538483 44538507 -57334662 + (TATG)n Simple_repeat Simple_repeat 2 25 0 4262 250 65 22 chr13 44538509 44539703 -57333466 - L1MD1 LINE L1 -5283 1257 13 21 0 0 0 chr13 44539844 44539865 -57333304 + AT_rich Low_complexity Low_complexity 1 21 0 320 288 151 20 chr13 44540287 44540433 -57332736 + MIR SINE MIR 72 236 -26 268 182 91 20 chr13 44540467 44540566 -57332603 - L1 LINE L1 -1800 4346 4241 23 0 0 0 chr13 44542282 44542305 -57330864 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr13 44542717 44542756 -57330413 + (TG)n Simple_repeat Simple_repeat 2 40 0 744 58 0 0 chr13 44543269 44543373 -57329796 + AluY SINE Alu 208 311 0 190 330 80 27 chr13 44544274 44544386 -57328783 + L2 LINE L2 2633 2750 -564 379 140 0 0 chr13 44544487 44544544 -57328625 - AluS SINE Alu -15 285 229 22 0 0 0 chr13 44544643 44544665 -57328504 + AT_rich Low_complexity Low_complexity 1 22 0 493 305 69 15 chr13 44544684 44544887 -57328282 - MIR SINE MIR 0 262 49 286 345 97 0 chr13 44544897 44545010 -57328159 + L2 LINE L2 2935 3058 -214 707 247 82 12 chr13 44545205 44545375 -57327794 + MER5A DNA MER1_type 8 189 0 1643 160 16 66 chr13 44545943 44546262 -57326907 - AluJb SINE Alu -9 303 1 43832 43 2 1 chr13 44547500 44553648 -57319521 - L1PA4 LINE L1 -3 6152 1 1572 187 18 4 chr13 44553955 44554233 -57318936 - AluJo SINE Alu -19 293 12 1386 144 148 8 chr13 44554352 44554649 -57318520 + AluSx SINE Alu 1 332 0 201 274 0 0 chr13 44555030 44555081 -57318088 - MIR3 SINE MIR -5 203 153 2693 198 38 47 chr13 44555228 44555886 -57317283 + MER82 DNA MER2_type 2 653 0 235 378 50 25 chr13 44555950 44556151 -57317018 - L3 LINE CR1 -219 1358 1153 680 243 44 56 chr13 44556743 44556994 -57316175 + Charlie8 DNA MER1_type 27 274 -2143 2247 122 3 0 chr13 44557507 44557819 -57315350 - AluSq SINE Alu 0 313 1 203 184 20 20 chr13 44557933 44557982 -57315187 + (CAG)n Simple_repeat Simple_repeat 2 50 0 21 71 0 0 chr13 44558734 44558776 -57314393 + AT_rich Low_complexity Low_complexity 1 42 0 1101 280 51 33 chr13 44558851 44559240 -57313929 - MLT1I LTR MaLR -2 407 12 2184 94 11 0 chr13 44559442 44559780 -57313389 + AluSp SINE Alu 1 341 0 12569 201 58 21 chr13 44560149 44564601 -57308568 - L1MA7 LINE L1 0 7710 3110 3542 258 36 42 chr13 44564600 44566592 -57306577 - L1M2 LINE L1 -4253 2098 247 * 794 225 36 5 chr13 44566596 44566818 -57306351 + L1M3b LINE L1 1273 1501 -4780 818 260 4 50 chr13 44566820 44567062 -57306107 - L1M2 LINE L1 -6043 238 8 25 51 0 0 chr13 44567179 44567218 -57305951 + AT_rich Low_complexity Low_complexity 1 39 0 228 164 36 36 chr13 44567277 44567332 -57305837 - MLT1D LTR MaLR -1 625 571 293 120 0 20 chr13 44567351 44567401 -57305768 - MLT1D LTR MaLR -43 462 414 713 273 20 0 chr13 44567401 44567551 -57305618 + L1M3b LINE L1 428 580 -5701 1591 161 75 42 chr13 44567551 44567886 -57305283 - MLT1D LTR MaLR -91 414 69 1154 246 168 18 chr13 44567934 44568368 -57304801 - MER101B LTR ERV1 -39 531 33 320 95 68 81 chr13 44568405 44568479 -57304690 - MLT1D LTR MaLR -432 73 1 418 336 33 5 chr13 44569823 44569969 -57303200 - MIR SINE MIR -65 143 42 872 233 58 55 chr13 44571302 44571547 -57301622 - MIR SINE MIR -1 261 16 377 276 133 52 chr13 44572018 44572101 -57301068 + MIR SINE MIR 22 97 -165 1970 149 48 25 chr13 44572101 44572457 -57300712 - THE1B LTR MaLR 0 364 1 11036 111 10 1 chr13 44572457 44574023 -57299146 - THE1B-int LTR MaLR 0 1580 1 2242 124 36 17 chr13 44574023 44574379 -57298790 - THE1B LTR MaLR 0 364 2 377 276 133 52 chr13 44574379 44574503 -57298666 + MIR SINE MIR 96 248 -14 194 268 71 0 chr13 44574868 44574924 -57298245 + L2 LINE L2 3213 3272 0 693 261 27 0 chr13 44576351 44576535 -57296634 + MIR SINE MIR 74 262 0 1508 206 50 48 chr13 44576913 44577393 -57295776 + Charlie1b DNA MER1_type 42 522 -1 218 333 32 0 chr13 44577737 44577800 -57295369 - L2 LINE L2 -74 3198 3134 265 237 105 0 chr13 44578204 44578280 -57294889 + MLT1F LTR MaLR 288 371 -171 2198 122 3 0 chr13 44578380 44578684 -57294485 - AluSx SINE Alu -7 305 1 258 206 44 0 chr13 44578803 44578871 -57294298 - MLT1G LTR MaLR -9 581 511 740 277 94 52 chr13 44578881 44579277 -57293892 - HAL1 LINE L1 -1171 1336 899 2021 148 0 0 chr13 44579277 44579574 -57293595 - AluJb SINE Alu -15 297 1 740 277 94 52 chr13 44579574 44579848 -57293321 - HAL1 LINE L1 -1608 899 638 268 281 256 0 chr13 44580753 44580874 -57292295 + L2 LINE L2 3121 3272 0 192 156 0 0 chr13 44581053 44581085 -57292084 - MIR SINE MIR -26 236 205 421 235 0 0 chr13 44581365 44581446 -57291723 + L2 LINE L2 3232 3312 -1 228 299 122 0 chr13 44582285 44582392 -57290777 + L2 LINE L2 3181 3300 -13 19501 182 28 10 chr13 44584370 44585339 -57287830 - L1PA13 LINE L1 -12 6802 5852 207 0 0 0 chr13 44585339 44585362 -57287807 + (TG)n Simple_repeat Simple_repeat 2 24 0 19501 182 28 10 chr13 44585362 44591055 -57282114 - L1PA13 LINE L1 -962 5852 3 204 311 66 0 chr13 44591441 44591502 -57281667 + MIR SINE MIR 91 155 -107 813 235 22 0 chr13 44591504 44591687 -57281482 - MER5A DNA MER1_type 0 189 3 290 282 204 45 chr13 44592438 44592658 -57280511 + MIR SINE MIR 7 261 -1 1726 146 75 39 chr13 44593004 44593366 -57279803 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr13 44594646 44594668 -57278501 + AT_rich Low_complexity Low_complexity 1 22 0 237 98 0 0 chr13 44594757 44594798 -57278371 + (T)n Simple_repeat Simple_repeat 1 41 0 189 345 41 21 chr13 44595417 44595562 -57277607 + MIR SINE MIR 61 208 -54 180 115 0 0 chr13 44595675 44595701 -57277468 + MER5A DNA MER1_type 88 113 -76 1216 265 107 51 chr13 44595817 44596330 -57276839 - MLT1F LTR MaLR 0 542 1 457 209 62 168 chr13 44596412 44596752 -57276417 - MLT1F-int LTR MaLR -107 1264 961 22 35 0 0 chr13 44597347 44597376 -57275793 + AT_rich Low_complexity Low_complexity 1 29 0 2023 115 7 36 chr13 44597430 44597735 -57275434 + AluSx SINE Alu 1 296 -16 276 330 121 33 chr13 44598271 44598544 -57274625 + L2 LINE L2 2677 2973 -341 183 306 235 0 chr13 44598706 44598791 -57274378 + L2 LINE L2 3209 3313 0 2143 139 14 25 chr13 44598853 44599221 -57273948 + THE1B LTR MaLR 1 364 0 767 277 68 0 chr13 44599239 44599474 -57273695 + MIR SINE MIR 9 259 -3 271 298 149 0 chr13 44599642 44599736 -57273433 + L2 LINE L2 3200 3307 -6 407 281 54 27 chr13 44601168 44601353 -57271816 + MIR SINE MIR 8 197 -65 322 301 88 9 chr13 44601818 44601931 -57271238 + MIR SINE MIR 53 174 -88 599 196 11 95 chr13 44602163 44602342 -57270827 - MER103 DNA DNA -1 165 2 1478 162 18 128 chr13 44602678 44603067 -57270102 + MER7A DNA MER2_type 1 344 -2 704 200 0 8 chr13 44603268 44603398 -57269771 + AluJo SINE Alu 6 134 -178 406 171 0 26 chr13 44603435 44603511 -57269658 + AluJo SINE Alu 138 211 -101 1803 196 31 58 chr13 44604729 44605209 -57267960 - MLT1C LTR MaLR 0 467 1 340 248 16 11 chr13 44605404 44605538 -57267631 - MER5B DNA MER1_type 0 178 2 216 184 0 0 chr13 44606180 44606229 -57266940 + (TG)n Simple_repeat Simple_repeat 2 50 0 383 342 0 0 chr13 44607230 44607350 -57265819 + L2 LINE L2 3193 3312 -1 186 43 0 0 chr13 44607772 44607795 -57265374 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr13 44609342 44609371 -57263798 + AT_rich Low_complexity Low_complexity 1 29 0 677 305 88 63 chr13 44609729 44610172 -57262997 - L2 LINE L2 -1 3312 2859 1337 57 0 0 chr13 44610194 44610352 -57262817 + AluY SINE Alu 130 287 -24 301 68 0 34 chr13 44610359 44610418 -57262751 + (CAAAAA)n Simple_repeat Simple_repeat 5 61 0 2346 261 100 58 chr13 44610430 44611409 -57261760 - L2 LINE L2 -509 2805 1786 21 0 0 0 chr13 44611605 44611626 -57261543 + AT_rich Low_complexity Low_complexity 1 21 0 183 304 51 13 chr13 44611628 44611707 -57261462 - L3 LINE CR1 -2 1575 1494 24 32 0 0 chr13 44612243 44612274 -57260895 + AT_rich Low_complexity Low_complexity 1 31 0 387 322 126 26 chr13 44612891 44613239 -57259930 + L1MEc LINE L1 23 405 -5991 1143 225 36 30 chr13 44613697 44614157 -57259012 + L1ME1 LINE L1 5328 5868 -298 312 301 59 22 chr13 44614348 44614484 -57258685 + L1MEc LINE L1 288 428 -5968 777 220 29 103 chr13 44614640 44614990 -57258179 + L1MEc LINE L1 1579 1902 -4494 766 214 61 61 chr13 44615002 44615231 -57257938 + LTR68 LTR ERV1 3 231 -509 2639 58 0 0 chr13 44615232 44615543 -57257626 + AluY SINE Alu 1 311 0 261 241 0 0 chr13 44615659 44615717 -57257452 + L1ME3 LINE L1 6104 6161 -1 2416 93 3 0 chr13 44616184 44616495 -57256674 - AluSp SINE Alu -1 312 1 231 328 115 0 chr13 44617206 44617328 -57255841 + L2 LINE L2 3137 3272 0 497 293 146 5 chr13 44618345 44618550 -57254619 + MIR SINE MIR 19 252 -10 1155 244 164 15 chr13 44619538 44619940 -57253229 - LTR16B LTR ERVL -1 463 2 207 340 125 20 chr13 44620031 44620231 -57252938 - MIR SINE MIR -10 252 32 16880 130 11 73 chr13 44620339 44623948 -57249221 + L1PA7 LINE L1 8 3636 -2825 13755 104 29 0 chr13 44624559 44627350 -57245819 + L1PA7 LINE L1 3635 6469 0 1416 149 41 2 chr13 44628114 44628546 -57244623 + L1MA7 LINE L1 5783 6291 0 21 36 0 0 chr13 44629104 44629132 -57244037 + AT_rich Low_complexity Low_complexity 1 28 0 796 281 114 32 chr13 44630314 44630478 -57242691 + Tigger8 DNA MER2_type 145 294 -372 2447 75 0 3 chr13 44630478 44630784 -57242385 + AluY SINE Alu 1 305 -6 796 281 114 32 chr13 44630784 44631050 -57242119 + Tigger8 DNA MER2_type 294 610 -56 190 316 0 0 chr13 44631132 44631189 -57241980 + L2 LINE L2 3216 3272 0 300 265 211 61 chr13 44632271 44632418 -57240751 - MIR3 SINE MIR -11 197 29 237 229 0 0 chr13 44632698 44632746 -57240423 - L2 LINE L2 -4 3268 3221 231 346 10 20 chr13 44634271 44634372 -57238797 + MIR SINE MIR 45 144 -64 213 281 146 11 chr13 44634532 44634621 -57238548 - MER5A DNA MER1_type -45 144 44 22 35 0 0 chr13 44636307 44636336 -57236833 + AT_rich Low_complexity Low_complexity 1 29 0 270 360 111 34 chr13 44636662 44637076 -57236093 + L2 LINE L2 1993 2438 -876 228 363 49 10 chr13 44637566 44637668 -57235501 + L2 LINE L2 3204 3309 -4 238 365 52 0 chr13 44637909 44638005 -57235164 - L2 LINE L2 -5 3267 3167 1176 212 20 115 chr13 44638010 44638411 -57234758 - MLT1A1 LTR MaLR 0 365 3 6647 223 94 26 chr13 44638420 44640027 -57233142 - MLT1A1-int LTR MaLR -7 1728 13 1041 180 62 117 chr13 44640029 44640414 -57232755 - MLT1A1 LTR MaLR -1 504 1 212 185 56 0 chr13 44640920 44640974 -57232195 + MIR3 SINE MIR 150 206 -2 1387 154 13 0 chr13 44641056 44641289 -57231880 - L1PA16 LINE L1 -9 6157 5922 209 241 35 46 chr13 44643127 44643214 -57229955 + L2 LINE L2 3182 3267 -46 641 289 77 52 chr13 44643679 44644155 -57229014 - L2 LINE L2 -109 3204 2731 1312 289 94 22 chr13 44645083 44645626 -57227543 - L3 LINE CR1 -265 1312 731 431 282 65 8 chr13 44645819 44645943 -57227226 - L2 LINE L2 0 3313 3183 799 240 98 54 chr13 44646040 44646446 -57226723 - MLT2B1 LTR ERVL -8 512 80 22 56 0 0 chr13 44647429 44647465 -57225704 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 44647516 44647550 -57225619 + AT_rich Low_complexity Low_complexity 1 34 0 1835 118 16 51 chr13 44647611 44647924 -57225245 - AluSx SINE Alu -10 302 1 206 365 76 21 chr13 44648349 44648494 -57224675 + MIR SINE MIR 56 208 -54 246 309 21 10 chr13 44648596 44648693 -57224476 + MIR SINE MIR 57 154 -108 1388 239 59 0 chr13 44648702 44649008 -57224161 + MLT2B1 LTR ERVL 3 326 -194 380 119 30 0 chr13 44649030 44649097 -57224072 + (TATG)n Simple_repeat Simple_repeat 2 70 0 183 80 0 0 chr13 44649097 44649122 -57224047 + (CA)n Simple_repeat Simple_repeat 2 26 0 376 56 0 19 chr13 44649124 44649178 -57223991 + MLT2B1 LTR ERVL 464 516 -4 265 354 68 37 chr13 44649454 44649699 -57223470 + L3 LINE CR1 888 1124 -453 716 220 44 0 chr13 44649699 44649858 -57223311 + FRAM SINE Alu 1 166 0 731 171 95 57 chr13 44649868 44650078 -57223091 - MER20 DNA MER1_type -1 218 1 265 354 68 37 chr13 44650078 44650143 -57223026 + L3 LINE CR1 1132 1219 -358 312 225 29 116 chr13 44650406 44650544 -57222625 + L3 LINE CR1 1257 1382 -195 1132 184 67 0 chr13 44650638 44650877 -57222292 - Tigger2 DNA MER2_type -1 2717 2463 3947 151 32 1 chr13 44650933 44651595 -57221574 - Tigger2 DNA MER2_type -1970 748 67 39 50 0 0 chr13 44651595 44651655 -57221514 + AT_rich Low_complexity Low_complexity 1 60 0 381 206 14 0 chr13 44651655 44651728 -57221441 - Tigger2 DNA MER2_type -2644 74 1 462 258 40 0 chr13 44651992 44652116 -57221053 - MIR SINE MIR -10 252 124 328 270 107 56 chr13 44652709 44652942 -57220227 + L3b LINE CR1 1203 1447 -136 28 29 0 0 chr13 44653050 44653085 -57220084 + AT_rich Low_complexity Low_complexity 1 35 0 1050 122 39 6 chr13 44653253 44653434 -57219735 + MER53 DNA DNA 1 187 -2 469 267 79 24 chr13 44653456 44653621 -57219548 + MER69A DNA AcHobo 4 177 0 322 182 0 0 chr13 44654379 44654434 -57218735 - L2 LINE L2 -4 3268 3214 484 71 0 71 chr13 44654498 44654582 -57218587 - L1PA5 LINE L1 0 6154 6077 7227 31 1 0 chr13 44654688 44655967 -57217202 - L1PA4 LINE L1 -54 6101 4822 5880 30 0 0 chr13 44655965 44656689 -57216480 - L1PA4 LINE L1 -2952 3194 2471 * 412 319 93 20 chr13 44657686 44657890 -57215279 - MIR SINE MIR -5 257 39 1729 154 39 39 chr13 44661332 44661663 -57211506 - MER21B LTR ERV1 -22 841 511 2413 209 121 23 chr13 44661669 44662329 -57210840 + MER50 LTR ERV1 10 734 0 * 2887 185 52 0 chr13 44662329 44662818 -57210351 - MER21B LTR ERV1 -348 515 1 27 0 0 0 chr13 44662896 44662923 -57210246 + AT_rich Low_complexity Low_complexity 1 27 0 303 313 115 33 chr13 44662969 44663151 -57210018 + MIR SINE MIR 60 256 -6 2226 150 57 27 chr13 44663776 44664182 -57208987 + MSTB LTR MaLR 1 418 -8 459 167 33 11 chr13 44664200 44664290 -57208879 + MSTA LTR MaLR 332 423 -5 1077 302 112 48 chr13 44665662 44666420 -57206749 - L2 LINE L2 -9 3304 2463 189 74 0 0 chr13 44666420 44666447 -57206722 + (TG)n Simple_repeat Simple_repeat 2 28 0 1077 302 112 48 chr13 44666447 44666773 -57206396 - L2 LINE L2 -850 2463 2159 192 125 0 0 chr13 44666786 44666818 -57206351 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr13 44666860 44666882 -57206287 + AT_rich Low_complexity Low_complexity 1 22 0 2242 177 22 29 chr13 44666891 44667344 -57205825 - L1PB4 LINE L1 0 6156 5707 226 313 45 62 chr13 44667345 44667524 -57205645 - L2 LINE L2 -1192 2122 1947 1558 136 8 8 chr13 44667543 44667808 -57205361 - L1M1 LINE L1 -647 5653 5389 1004 215 64 43 chr13 44668165 44668591 -57204578 - HsTC2 DNA Tc2 -2 1896 1271 937 253 30 0 chr13 44668587 44668824 -57204345 - HsTC2 DNA Tc2 -1153 745 502 * 650 228 119 26 chr13 44668820 44669013 -57204156 - HsTC2 DNA Tc2 -1686 212 2 * 25 31 0 0 chr13 44669154 44669186 -57203983 + AT_rich Low_complexity Low_complexity 1 32 0 262 253 58 11 chr13 44669188 44669275 -57203894 + MLT1J LTR MaLR 82 172 -339 234 337 54 0 chr13 44669372 44669464 -57203705 + MLT1L LTR MaLR 348 444 -171 787 177 30 101 chr13 44669494 44669586 -57203583 + AluSg SINE Alu 49 121 -189 240 35 0 0 chr13 44669586 44669615 -57203554 + (TA)n Simple_repeat Simple_repeat 2 30 0 787 177 30 101 chr13 44669615 44669720 -57203449 + AluSg SINE Alu 121 232 -78 374 175 82 10 chr13 44669747 44669844 -57203325 + MLT1J LTR MaLR 389 492 -19 470 184 18 44 chr13 44670290 44670404 -57202765 + MSTD LTR MaLR 1 111 -285 * 744 183 5 45 chr13 44670380 44670538 -57202631 + MSTD LTR MaLR 261 396 0 39 22 0 0 chr13 44671236 44671282 -57201887 + AT_rich Low_complexity Low_complexity 1 46 0 279 79 0 0 chr13 44671743 44671781 -57201388 + (TC)n Simple_repeat Simple_repeat 1 38 0 2252 102 3 0 chr13 44671797 44672091 -57201078 + AluSq SINE Alu 1 295 -18 1215 209 106 14 chr13 44673285 44673701 -57199468 - Charlie2 DNA MER1_type -122 2740 2287 27 29 0 0 chr13 44673704 44673738 -57199431 + AT_rich Low_complexity Low_complexity 1 34 0 253 177 129 0 chr13 44673752 44673814 -57199355 - Charlie2 DNA MER1_type -685 2177 2108 603 235 37 32 chr13 44673844 44674031 -57199138 - Charlie2 DNA MER1_type -818 2044 1857 469 282 97 60 chr13 44674050 44674298 -57198871 - Charlie2 DNA MER1_type -2560 302 46 513 236 286 0 chr13 44674633 44674874 -57198295 - L1MC4 LINE L1 -761 7281 6972 1053 265 103 27 chr13 44674992 44675438 -57197731 + HAL1b LINE L1 62 541 -807 1620 235 136 20 chr13 44675553 44676187 -57196982 + L1MC4a LINE L1 5268 5974 -1834 21 57 0 0 chr13 44677534 44677569 -57195600 + AT_rich Low_complexity Low_complexity 1 35 0 1683 184 86 0 chr13 44677741 44678077 -57195092 + MLT1A1 LTR MaLR 1 365 0 1751 228 68 51 chr13 44678604 44678767 -57194402 + MLT2B3 LTR ERVL 1 160 -394 207 0 0 0 chr13 44678767 44678790 -57194379 + (CTAGGG)n Simple_repeat Simple_repeat 3 25 0 1751 228 68 51 chr13 44678790 44679171 -57193998 + MLT2B3 LTR ERVL 160 554 0 255 254 14 14 chr13 44679750 44679821 -57193348 + MIR SINE MIR 25 95 -167 8616 163 27 11 chr13 44680735 44680892 -57192277 - L1MA6 LINE L1 -5 6295 6142 2571 108 16 8 chr13 44680892 44681264 -57191905 + THE1C LTR MaLR 1 375 0 8616 163 27 11 chr13 44681264 44683710 -57189459 - L1MA6 LINE L1 -158 6142 3646 2176 110 0 0 chr13 44684484 44684796 -57188373 - AluSq SINE Alu 0 312 1 228 253 0 0 chr13 44685060 44685135 -57188034 + CT-rich Low_complexity Low_complexity 2 76 0 2327 237 19 10 chr13 44685386 44686011 -57187158 + L1M4 LINE L1 3889 4519 -1627 493 255 32 10 chr13 44686012 44686190 -57186979 + L1MA10 LINE L1 5976 6319 -9 391 320 65 30 chr13 44686216 44686416 -57186753 + MER110 LTR ERV1 273 479 -12 528 261 28 33 chr13 44686440 44686620 -57186549 - MER58A DNA MER1_type -9 215 37 323 278 43 53 chr13 44686781 44686968 -57186201 - L1M4 LINE L1 -1100 5046 4862 1243 126 25 46 chr13 44686981 44687219 -57185950 + MER50 LTR ERV1 1 233 -501 * 1521 147 49 28 chr13 44687208 44687494 -57185675 + MER50 LTR ERV1 433 724 -10 326 273 93 44 chr13 44687680 44688004 -57185165 - L1M4 LINE L1 -1746 4400 4050 300 270 14 0 chr13 44688070 44688144 -57185025 + L1MC4 LINE L1 6649 6723 -1319 258 326 60 46 chr13 44688505 44689118 -57184051 - L1M4 LINE L1 -1922 4224 3603 21 0 0 0 chr13 44689185 44689206 -57183963 + AT_rich Low_complexity Low_complexity 1 21 0 42 36 0 0 chr13 44689768 44689824 -57183345 + AT_rich Low_complexity Low_complexity 1 56 0 6208 148 28 8 chr13 44690801 44692043 -57181126 + THE1C-int LTR MaLR 69 1353 -227 362 125 0 16 chr13 44692033 44692097 -57181072 + THE1C-int LTR MaLR 1517 1579 -1 * 2210 107 37 45 chr13 44692097 44692471 -57180698 + THE1C LTR MaLR 5 375 0 324 0 0 0 chr13 44692472 44692508 -57180661 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 345 47 0 0 chr13 44692507 44692550 -57180619 + (TA)n Simple_repeat Simple_repeat 2 44 0 565 199 146 33 chr13 44693553 44693704 -57179465 + MER67D LTR ERV1 1 168 -346 * 1432 164 16 8 chr13 44693679 44693935 -57179234 - Tigger2 DNA MER2_type -10 2708 2451 4157 149 45 8 chr13 44694001 44694719 -57178450 - Tigger2 DNA MER2_type -1974 744 1 778 184 56 93 chr13 44694721 44695138 -57178031 + MER67D LTR ERV1 144 510 -4 492 250 47 66 chr13 44695207 44695549 -57177620 - LTR35 LTR ERV1 0 677 350 216 244 0 0 chr13 44695907 44695948 -57177221 - L2 LINE L2 -212 3060 3020 883 310 0 16 chr13 44696068 44696310 -57176859 - MIR SINE MIR -9 253 16 22 35 0 0 chr13 44696545 44696574 -57176595 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr13 44697234 44697268 -57175901 + (TG)n Simple_repeat Simple_repeat 2 35 0 376 261 81 0 chr13 44697321 44697432 -57175737 + MER5B DNA MER1_type 1 120 -58 753 226 0 0 chr13 44697708 44697885 -57175284 + (TA)n Simple_repeat Simple_repeat 2 178 0 317 322 0 0 chr13 44697905 44697995 -57175174 - L1MC4 LINE L1 -1339 6703 6614 316 296 23 0 chr13 44697925 44698013 -57175156 + L1MC4 LINE L1 6614 6703 -1339 * 305 333 0 0 chr13 44698013 44698103 -57175066 + L1MC4 LINE L1 6614 6703 -1339 304 296 23 0 chr13 44698027 44698115 -57175054 - L1MC4 LINE L1 -1339 6703 6614 * 318 322 0 0 chr13 44698117 44698207 -57174962 - L1MC4 LINE L1 -1339 6703 6614 308 277 0 43 chr13 44698137 44698231 -57174938 + L1MC4 LINE L1 6614 6703 -1339 * 641 242 0 11 chr13 44698254 44698436 -57174733 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 186 255 0 0 chr13 44698444 44698495 -57174674 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 591 272 0 0 chr13 44698488 44698668 -57174501 + (TG)n Simple_repeat Simple_repeat 1 180 0 636 208 35 0 chr13 44698696 44698869 -57174300 + (TATG)n Simple_repeat Simple_repeat 2 180 0 2319 156 12 0 chr13 44698871 44699282 -57173887 + L1MA5A LINE L1 5876 6291 -6 1503 245 32 22 chr13 44699510 44700131 -57173038 + L1M4 LINE L1 2734 3360 -2786 342 145 32 0 chr13 44700132 44700194 -57172975 + L1MB8 LINE L1 5423 5486 -694 24 0 0 0 chr13 44700340 44700364 -57172805 + AT_rich Low_complexity Low_complexity 1 24 0 2743 188 36 17 chr13 44700366 44700592 -57172577 + L1MB8 LINE L1 5520 5740 -438 2168 119 36 30 chr13 44700592 44700954 -57172215 - THE1B LTR MaLR 0 364 1 10635 107 34 0 chr13 44700954 44702482 -57170687 - THE1B-int LTR MaLR 0 1580 1 1879 160 36 30 chr13 44702482 44702844 -57170325 - THE1B LTR MaLR 0 364 1 2743 188 36 17 chr13 44702844 44703249 -57169920 + L1MB8 LINE L1 5739 6165 -13 27 0 0 0 chr13 44703322 44703349 -57169820 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr13 44704216 44704255 -57168914 + AT_rich Low_complexity Low_complexity 1 39 0 492 357 18 22 chr13 44704380 44704604 -57168565 - MIR SINE MIR -22 240 18 219 388 66 44 chr13 44704606 44704833 -57168336 + L2 LINE L2 2868 3099 -173 2762 13 0 6 chr13 44707342 44707657 -57165512 - AluYb8 SINE Alu -5 313 1 565 306 94 0 chr13 44708602 44708782 -57164387 + MIR SINE MIR 53 249 -13 6735 178 43 16 chr13 44708786 44709848 -57163321 - L1M3 LINE L1 -735 5433 4313 1478 212 7 7 chr13 44709848 44710136 -57163033 + AluJb SINE Alu 7 294 -18 6735 178 43 16 chr13 44710136 44710552 -57162617 - L1M3 LINE L1 -1855 4313 3910 647 305 50 11 chr13 44711707 44711971 -57161198 + MER110A LTR ERV1 213 470 -12 24 0 0 0 chr13 44712504 44712528 -57160641 + AT_rich Low_complexity Low_complexity 1 24 0 243 363 106 12 chr13 44712901 44713061 -57160108 + L2 LINE L2 3094 3268 -4 3091 140 38 25 chr13 44714444 44715080 -57158089 - L1MA8 LINE L1 0 6291 5648 2086 82 24 5 chr13 44715085 44715435 -57157734 - MLT2A1 LTR ERVL -7 437 1 387 127 0 0 chr13 44715435 44715498 -57157671 + (TA)n Simple_repeat Simple_repeat 1 63 0 617 172 38 0 chr13 44715599 44715756 -57157413 + GA-rich Low_complexity Low_complexity 1 163 0 540 183 41 15 chr13 44715781 44716035 -57157134 + GA-rich Low_complexity Low_complexity 1 260 0 461 229 11 28 chr13 44716010 44716189 -57156980 + A-rich Low_complexity Low_complexity 5 180 0 * 10506 66 15 39 chr13 44716210 44717878 -57155291 - L1MA8 LINE L1 -678 5634 3987 1470 157 46 130 chr13 44717978 44718485 -57154684 - L1M2 LINE L1 -690 5622 5138 450 85 24 12 chr13 44718485 44718567 -57154602 + (TA)n Simple_repeat Simple_repeat 2 84 0 206 307 147 20 chr13 44719423 44719573 -57153596 + MIR SINE MIR 79 247 -15 21 36 0 0 chr13 44719765 44719793 -57153376 + AT_rich Low_complexity Low_complexity 1 28 0 906 123 23 41 chr13 44719793 44719964 -57153205 - L1MA3 LINE L1 -6 7718 7551 5268 151 6 4 chr13 44719967 44721456 -57151713 - L1MA3 LINE L1 -249 7475 5985 21188 165 31 20 chr13 44721459 44721715 -57151454 - L1MA3 LINE L1 -2148 5417 5165 2185 102 7 0 chr13 44721715 44722010 -57151159 - AluY SINE Alu -10 301 5 21188 165 31 20 chr13 44722010 44723614 -57149555 - L1MA3 LINE L1 -2400 5165 3580 2036 115 0 11 chr13 44723614 44723930 -57149239 - AluSq SINE Alu 0 313 1 21188 165 31 20 chr13 44723930 44727314 -57145855 - L1MA3 LINE L1 -3985 3580 102 456 19 0 0 chr13 44727314 44727367 -57145802 + (TG)n Simple_repeat Simple_repeat 2 54 0 21188 165 31 20 chr13 44727367 44727457 -57145712 - L1MA3 LINE L1 -7463 102 14 198 103 0 0 chr13 44728252 44728281 -57144888 + (CA)n Simple_repeat Simple_repeat 2 30 0 1780 186 11 39 chr13 44728345 44728706 -57144463 + MSTB LTR MaLR 1 351 -75 7876 187 19 54 chr13 44728768 44729737 -57143432 + THE1B-int LTR MaLR 1 1003 -648 1855 143 92 15 chr13 44729737 44730073 -57143096 + THE1B LTR MaLR 1 362 -2 11095 97 23 5 chr13 44730075 44731627 -57141542 + THE1B-int LTR MaLR 1 1580 0 1967 157 76 15 chr13 44731627 44731970 -57141199 + THE1B LTR MaLR 1 364 0 7876 187 19 54 chr13 44731970 44732708 -57140461 + THE1B-int LTR MaLR 1002 1651 0 2195 199 17 15 chr13 44732711 44733118 -57140051 + MSTB LTR MaLR 4 411 -15 183 100 0 0 chr13 44734353 44734383 -57138786 + (TG)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr13 44734701 44734725 -57138444 + AT_rich Low_complexity Low_complexity 1 24 0 1446 240 83 14 chr13 44735168 44735589 -57137580 - LTR40b LTR ERVL 0 462 13 406 352 158 26 chr13 44735716 44737003 -57136166 + L2 LINE L2 1799 3257 -15 273 57 0 0 chr13 44737004 44737039 -57136130 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 231 140 0 80 chr13 44737245 44737295 -57135874 + L2 LINE L2 3227 3272 0 200 35 35 0 chr13 44737993 44738022 -57135147 + (TC)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr13 44738022 44738045 -57135124 + AT_rich Low_complexity Low_complexity 1 23 0 769 203 94 0 chr13 44738849 44739041 -57134128 + L1MB1 LINE L1 5954 6163 -5 528 340 36 12 chr13 44739223 44739476 -57133693 - L2 LINE L2 -1272 2042 1784 1759 161 20 10 chr13 44740018 44740310 -57132859 - AluJo SINE Alu -17 295 1 357 287 70 21 chr13 44741471 44741614 -57131555 - L2 LINE L2 -2 3311 3162 317 399 10 10 chr13 44741634 44741832 -57131337 - L2 LINE L2 -471 2843 2646 199 140 0 70 chr13 44741941 44741998 -57131171 + (CATA)n Simple_repeat Simple_repeat 3 55 0 * 603 268 0 0 chr13 44741986 44742165 -57131004 + (CA)n Simple_repeat Simple_repeat 2 180 0 576 266 0 0 chr13 44742134 44742303 -57130866 + (TA)n Simple_repeat Simple_repeat 2 170 0 * 303 333 0 0 chr13 44742306 44742396 -57130773 + L1MC4 LINE L1 6614 6703 -1339 * 309 326 0 0 chr13 44742393 44742482 -57130687 - L1MC4 LINE L1 -1340 6702 6614 633 230 0 0 chr13 44742492 44742644 -57130525 + (TA)n Simple_repeat Simple_repeat 2 153 0 303 333 0 0 chr13 44742644 44742734 -57130435 + L1MC4 LINE L1 6614 6703 -1339 328 273 23 0 chr13 44742736 44742824 -57130345 + L1MC4 LINE L1 6614 6703 -1339 305 326 0 0 chr13 44742745 44742834 -57130335 - L1MC4 LINE L1 -1340 6702 6614 * 186 267 107 53 chr13 44743097 44743228 -57129941 + MER5B DNA MER1_type 41 178 0 216 0 0 0 chr13 44743281 44743305 -57129864 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr13 44743965 44743994 -57129175 + AT_rich Low_complexity Low_complexity 1 29 0 862 314 0 16 chr13 44744230 44744472 -57128697 + MIR SINE MIR 16 253 -9 215 244 0 0 chr13 44744592 44744633 -57128536 + L2 LINE L2 3020 3060 -212 21 36 0 0 chr13 44745177 44745205 -57127964 + AT_rich Low_complexity Low_complexity 1 28 0 206 121 0 0 chr13 44745240 44745273 -57127896 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 80 0 0 chr13 44746314 44746364 -57126805 + AT_rich Low_complexity Low_complexity 1 50 0 1416 152 158 13 chr13 44746372 44746675 -57126494 - MSTA LTR MaLR -81 347 1 1108 304 93 42 chr13 44746678 44747538 -57125631 + L1MEc LINE L1 71 974 -5422 796 283 108 22 chr13 44747539 44748130 -57125039 + L1MEc LINE L1 1014 1655 -4741 2520 120 17 15 chr13 44748421 44748828 -57124341 - LTR49 LTR ERV1 -4 591 184 569 214 135 26 chr13 44748828 44749020 -57124149 + MLT2C1 LTR ERVL 19 231 -166 292 281 138 31 chr13 44749069 44749229 -57123940 + MIR SINE MIR 56 232 -30 437 189 111 0 chr13 44749229 44749319 -57123850 - Tigger2 DNA MER2_type 0 2718 2619 2739 73 98 5 chr13 44749321 44749731 -57123438 - LTR7 LTR ERV1 -2 448 1 2339 103 45 16 chr13 44749731 44750110 -57123059 - HERVH LTR ERV1 0 7713 7324 1368 122 33 0 chr13 44750110 44750323 -57122846 - HERVH LTR ERV1 -1894 5819 5600 4335 141 8 1 chr13 44750324 44750982 -57122187 - HERVH LTR ERV1 -2564 5149 4488 9206 93 4 10 chr13 44750984 44752316 -57120853 - HERVH LTR ERV1 -3720 3993 2670 998 112 0 0 chr13 44752416 44752550 -57120619 + AluSc SINE Alu 165 298 -11 264 224 0 0 chr13 44753410 44753468 -57119701 - MLT1G LTR MaLR -16 574 517 2018 205 66 45 chr13 44753471 44754003 -57119166 - LTR55 LTR ERV -5 543 1 323 283 35 55 chr13 44754003 44754148 -57119021 - MLT1G LTR MaLR -69 521 380 654 261 94 50 chr13 44754149 44754551 -57118618 - MLT1G LTR MaLR -144 446 24 21 0 0 0 chr13 44755543 44755564 -57117605 + AT_rich Low_complexity Low_complexity 1 21 0 326 305 68 0 chr13 44755989 44756107 -57117062 + MIR SINE MIR 68 193 -69 408 148 12 12 chr13 44757139 44757220 -57115949 - MER5A DNA MER1_type -96 93 13 646 198 28 51 chr13 44757243 44757420 -57115749 - MER5B DNA MER1_type -4 174 2 195 129 0 0 chr13 44757433 44757464 -57115705 + (TG)n Simple_repeat Simple_repeat 2 32 0 817 232 6 6 chr13 44757887 44758055 -57115114 - MER97a DNA MER1_type? -716 178 11 226 233 95 9 chr13 44758263 44758379 -57114790 - L1M LINE L1 -873 5427 5302 1426 209 3 19 chr13 44758380 44758741 -57114428 - AluJb SINE Alu 0 312 1 415 205 8 31 chr13 44758754 44758881 -57114288 - L1MA9 LINE L1 -25 6287 6164 4125 194 27 14 chr13 44759004 44760403 -57112766 - L1MA9 LINE L1 -495 5817 4399 800 204 25 0 chr13 44760468 44760625 -57112544 + MER6B DNA MER2_type 1 161 -49 3612 175 20 23 chr13 44761272 44761979 -57111190 + MER39 LTR ERV1 3 707 0 213 128 0 26 chr13 44762784 44762823 -57110346 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 3074 159 113 50 chr13 44763824 44764222 -57108947 + MER39 LTR ERV1 1 372 -335 2009 115 68 74 chr13 44764222 44764548 -57108621 + THE1B LTR MaLR 1 326 -38 2133 125 3 0 chr13 44764548 44764859 -57108310 - AluSx SINE Alu 0 312 1 2009 115 68 74 chr13 44764859 44764898 -57108271 + THE1B LTR MaLR 326 364 0 11411 105 3 3 chr13 44764898 44766478 -57106691 + THE1B-int LTR MaLR 1 1580 0 1852 152 84 26 chr13 44766478 44766821 -57106348 + THE1B LTR MaLR 1 363 -1 3074 159 113 50 chr13 44766821 44767085 -57106084 + MER39 LTR ERV1 371 707 0 22 35 0 0 chr13 44767910 44767939 -57105230 + AT_rich Low_complexity Low_complexity 1 29 0 1138 226 91 36 chr13 44768360 44768855 -57104314 - MER69 DNA AcHobo 0 2526 2005 * 1522 226 174 18 chr13 44768844 44769339 -57103830 - MER69 DNA AcHobo -1954 572 1 1841 148 0 40 chr13 44769376 44769674 -57103495 + AluSx SINE Alu 1 286 -26 318 341 73 16 chr13 44770703 44770826 -57102343 + L2 LINE L2 3141 3270 -2 222 163 41 0 chr13 44771922 44771971 -57101198 + (CTTTA)n Simple_repeat Simple_repeat 3 53 0 1340 246 7 7 chr13 44772004 44772293 -57100876 + AluJo SINE Alu 1 289 -23 534 314 62 16 chr13 44772725 44772919 -57100250 + MIR SINE MIR 46 248 -14 26 30 0 0 chr13 44772928 44772961 -57100208 + AT_rich Low_complexity Low_complexity 1 33 0 548 343 133 31 chr13 44773268 44773839 -57099330 + L2 LINE L2 2092 2720 -594 2476 193 50 31 chr13 44773900 44774405 -57098764 + MLT2B3 LTR ERVL 1 518 -36 441 55 41 0 chr13 44774405 44774478 -57098691 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2476 193 50 31 chr13 44774478 44774516 -57098653 + MLT2B3 LTR ERVL 518 554 0 757 332 24 27 chr13 44774522 44774853 -57098316 - MER115 DNA AcHobo -271 422 93 313 243 14 0 chr13 44775057 44775131 -57098038 - MIR SINE MIR -120 142 68 2547 52 0 0 chr13 44775323 44775628 -57097541 - AluY SINE Alu -6 305 1 1852 119 3 99 chr13 44775914 44776257 -57096912 - AluSx SINE Alu -2 310 1 210 71 0 0 chr13 44776416 44776444 -57096725 + (CA)n Simple_repeat Simple_repeat 1 28 0 2139 118 0 7 chr13 44776702 44776998 -57096171 + AluSx SINE Alu 1 294 -18 2490 148 14 23 chr13 44777198 44777636 -57095533 - Tigger2a DNA MER2_type 0 434 1 372 379 40 0 chr13 44777844 44778021 -57095148 - MIR SINE MIR -74 188 5 347 340 149 0 chr13 44778904 44779045 -57094124 - L2 LINE L2 -3 3269 3108 2287 193 19 24 chr13 44779703 44780169 -57093000 - MER88 LTR ERVL 0 464 1 198 316 92 40 chr13 44780565 44780641 -57092528 - L2 LINE L2 -54 3218 3139 239 309 96 44 chr13 44781143 44781551 -57091618 + L1ME LINE L1 5377 5805 -316 2155 36 44 11 chr13 44781602 44781912 -57091257 + AluY SINE Alu 1 319 0 22 56 0 0 chr13 44782544 44782580 -57090589 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr13 44782870 44782895 -57090274 + AT_rich Low_complexity Low_complexity 1 25 0 680 268 50 50 chr13 44783235 44783474 -57089695 + MIR SINE MIR 24 262 0 808 281 164 19 chr13 44784171 44784224 -57088945 - L2 LINE L2 -1101 2213 2169 2446 50 3 0 chr13 44784224 44784527 -57088642 + AluY SINE Alu 1 304 -7 808 281 164 19 chr13 44784527 44784996 -57088173 - L2 LINE L2 -1145 2169 1615 21 0 0 0 chr13 44786224 44786245 -57086924 + AT_rich Low_complexity Low_complexity 1 21 0 195 162 0 0 chr13 44787124 44787161 -57086008 + (CA)n Simple_repeat Simple_repeat 1 37 0 254 218 327 45 chr13 44788373 44788483 -57084686 + MER5A DNA MER1_type 49 189 0 1394 326 74 33 chr13 44788653 44789643 -57083526 + L2 LINE L2 1959 2986 -327 410 201 0 21 chr13 44789643 44789787 -57083382 + (CA)n Simple_repeat Simple_repeat 1 141 0 3063 176 23 32 chr13 44789950 44790615 -57082554 - L1PB4 LINE L1 -1411 4735 4077 4295 183 54 5 chr13 44790617 44791143 -57082026 + L1PB4 LINE L1 4764 5263 -893 273 119 0 0 chr13 44791143 44791185 -57081984 + (CAA)n Simple_repeat Simple_repeat 1 42 0 4295 183 54 5 chr13 44791185 44791989 -57081180 + L1PB4 LINE L1 5263 6148 -8 360 339 8 0 chr13 44792194 44792312 -57080857 - L1 LINE L1 -2160 3986 3868 233 278 0 0 chr13 44792449 44792503 -57080666 + (CTA)n Simple_repeat Simple_repeat 2 55 0 719 339 58 19 chr13 44792653 44793173 -57079996 - L1 LINE L1 -2663 3483 2944 2656 109 3 3 chr13 44793411 44793786 -57079383 + THE1C LTR MaLR 1 375 0 1670 176 134 29 chr13 44794794 44795203 -57077966 + LTR10A LTR ERV1 97 548 -61 271 304 117 41 chr13 44795287 44796277 -57076892 - L1M4 LINE L1 -2406 3740 2676 1625 199 55 39 chr13 44796852 44797270 -57075899 - MER39 LTR ERV1 -8 699 67 31 68 0 0 chr13 44799047 44799106 -57074063 + AT_rich Low_complexity Low_complexity 1 59 0 262 214 12 60 chr13 44799122 44799206 -57073963 - MER116 DNA Mariner 0 80 1 25 51 0 0 chr13 44799444 44799483 -57073686 + AT_rich Low_complexity Low_complexity 1 39 0 489 314 74 0 chr13 44799697 44799872 -57073297 - L2 LINE L2 -731 2583 2396 201 282 0 28 chr13 44800766 44800837 -57072332 + A-rich Low_complexity Low_complexity 3 71 0 214 214 18 0 chr13 44802062 44802118 -57071051 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr13 44803498 44803520 -57069649 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 60 chr13 44803545 44803595 -57069574 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 227 349 128 0 chr13 44804921 44805007 -57068162 - MIR SINE MIR -63 145 49 277 284 73 28 chr13 44805105 44805214 -57067955 + L2 LINE L2 3158 3271 -1 812 177 35 54 chr13 44805285 44805488 -57067681 + L1ME1 LINE L1 5581 5779 -385 488 213 15 11 chr13 44805496 44805627 -57067542 + L1ME1 LINE L1 6045 6183 -1 1405 273 57 14 chr13 44806893 44807122 -57066047 + L1MEc LINE L1 1842 2060 -4155 1464 191 0 53 chr13 44807122 44807442 -57065727 + AluJo SINE Alu 1 303 -9 1405 273 57 14 chr13 44807442 44808061 -57065108 + L1MEc LINE L1 2060 2690 -3525 405 300 61 0 chr13 44808075 44808322 -57064847 + L1MEc LINE L1 2938 3199 -3016 222 250 15 29 chr13 44808494 44808562 -57064607 + L2 LINE L2 3202 3268 -4 578 129 10 0 chr13 44810449 44810539 -57062630 + (TAGA)n Simple_repeat Simple_repeat 1 94 -8 2076 136 3 0 chr13 44810539 44810834 -57062335 - AluSg SINE Alu -14 296 1 578 129 10 0 chr13 44810834 44810844 -57062325 + (TAGA)n Simple_repeat Simple_repeat 94 102 0 222 205 0 0 chr13 44813525 44813564 -57059605 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 523 308 76 30 chr13 44813688 44813952 -57059217 - L2 LINE L2 -280 3033 2761 277 359 12 41 chr13 44814176 44814346 -57058823 + L2 LINE L2 2152 2316 -998 194 375 34 34 chr13 44814475 44814563 -57058606 + L2 LINE L2 3168 3255 -58 22 0 0 0 chr13 44814905 44814927 -57058242 + AT_rich Low_complexity Low_complexity 1 22 0 1127 157 64 15 chr13 44814960 44815164 -57058005 - AluJb SINE Alu -11 301 88 2240 131 100 3 chr13 44815449 44815839 -57057330 + MSTA LTR MaLR 1 428 0 9607 163 19 3 chr13 44815848 44817465 -57055704 + MSTA-int LTR MaLR 9 1651 0 2159 125 120 3 chr13 44817465 44817848 -57055321 + MSTA LTR MaLR 1 428 0 2001 218 69 24 chr13 44818867 44819359 -57053810 + MER67D LTR ERV1 1 514 0 279 296 25 0 chr13 44819372 44819453 -57053716 - MIR SINE MIR -21 241 159 5388 152 21 15 chr13 44819455 44820346 -57052823 + MER4D LTR ERV1 1 897 -6 214 420 109 24 chr13 44820535 44820864 -57052305 - L2 LINE L2 0 3272 2916 253 317 145 45 chr13 44820907 44821308 -57051861 - L2 LINE L2 -442 2872 2432 220 218 18 0 chr13 44821821 44821876 -57051293 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 32 26 0 0 chr13 44823021 44823060 -57050109 + AT_rich Low_complexity Low_complexity 1 39 0 811 188 67 54 chr13 44823883 44824107 -57049062 + L1MC2 LINE L1 6110 6336 -8 243 300 30 30 chr13 44824183 44824283 -57048886 - MER101 LTR ERV1 -29 445 346 2085 154 103 8 chr13 44824292 44824681 -57048488 - MSTA LTR MaLR -2 426 1 520 279 105 43 chr13 44824745 44825021 -57048148 - MER101B LTR ERV1 -277 293 1 1135 184 165 48 chr13 44826079 44826437 -57046732 - MER31B LTR ERV1 -55 411 12 3030 136 109 20 chr13 44826530 44827128 -57046041 + MER39B LTR ERV1 3 653 0 28 61 0 0 chr13 44827268 44827317 -57045852 + AT_rich Low_complexity Low_complexity 1 49 0 233 153 69 14 chr13 44827622 44827694 -57045475 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 24 32 0 0 chr13 44827728 44827759 -57045410 + AT_rich Low_complexity Low_complexity 1 31 0 1540 147 86 31 chr13 44827811 44828133 -57045036 + Tigger2a DNA MER2_type 1 340 -94 4001 153 22 27 chr13 44828133 44828847 -57044322 + MER50 LTR ERV1 1 711 -23 2693 73 103 5 chr13 44828852 44829260 -57043909 + LTR7 LTR ERV1 1 448 -2 10635 96 11 30 chr13 44829262 44831372 -57041797 + HERVH LTR ERV1 1 2196 -5517 189 250 0 0 chr13 44831505 44831545 -57041624 + L2 LINE L2 3210 3249 -23 2224 103 0 31 chr13 44831687 44832006 -57041163 - AluSx SINE Alu -3 309 1 217 323 50 20 chr13 44832031 44832130 -57041039 + L2 LINE L2 2955 3056 -216 4995 168 37 31 chr13 44833750 44834731 -57038438 + L1MB2 LINE L1 31 1017 -5367 1129 165 52 13 chr13 44834732 44834962 -57038207 + MER41B LTR ERV1 397 635 0 2711 121 22 5 chr13 44834962 44835377 -57037792 + MER41B-int LTR ERV1 1 422 -5524 2989 214 94 44 chr13 44835394 44836236 -57036933 + MER52A LTR ERV1 125 1008 -747 1250 176 17 21 chr13 44836236 44836474 -57036695 + MER41B-int LTR ERV1 2394 2630 -4907 * 4886 125 73 25 chr13 44836465 44837332 -57035837 + MER41B-int LTR ERV1 2777 3684 -3853 * 11775 107 21 29 chr13 44837331 44839270 -57033899 + MER41B-int LTR ERV1 2941 4893 -1053 2400 91 10 0 chr13 44839270 44839577 -57033592 - AluY SINE Alu -1 310 1 11775 107 21 29 chr13 44839577 44839674 -57033495 + MER41B-int LTR ERV1 4893 4989 -957 1847 165 3 52 chr13 44839674 44840001 -57033168 - AluSx SINE Alu -1 311 1 11775 107 21 29 chr13 44840001 44840177 -57032992 + MER41B-int LTR ERV1 4989 5944 -2 3234 112 14 73 chr13 44840177 44840738 -57032431 + MER41B LTR ERV1 1 528 -107 913 281 28 29 chr13 44840983 44841394 -57031775 + MLT1G1 LTR MaLR 87 524 -31 3293 78 11 0 chr13 44841823 44842258 -57030911 - L1PA7 LINE L1 -30 6124 5685 7804 197 58 84 chr13 44842260 44846152 -57027017 + L1MB2 LINE L1 2202 5975 -432 1951 149 14 65 chr13 44846152 44846507 -57026662 + MER1B DNA MER1_type 1 337 0 7804 197 58 84 chr13 44846507 44846930 -57026239 + L1MB2 LINE L1 5975 6407 0 2640 99 3 0 chr13 44846964 44847318 -57025851 - THE1A LTR MaLR 0 355 1 11388 96 10 2 chr13 44847318 44848887 -57024282 - THE1A-int LTR MaLR 0 1580 1 2487 108 8 8 chr13 44848889 44849241 -57023928 - THE1A LTR MaLR -2 353 2 1519 199 14 7 chr13 44849241 44849518 -57023651 - AluJb SINE Alu -33 279 1 378 0 0 0 chr13 44849692 44849734 -57023435 + (TA)n Simple_repeat Simple_repeat 2 43 0 476 333 15 0 chr13 44849914 44850046 -57023123 - MIR3 SINE MIR -15 193 60 572 314 103 0 chr13 44850159 44850344 -57022825 - MIR SINE MIR -58 204 1 22 0 0 0 chr13 44850624 44850646 -57022523 + AT_rich Low_complexity Low_complexity 1 22 0 2068 196 61 12 chr13 44851345 44851774 -57021395 - MER74C LTR ERVL 0 460 11 315 339 79 23 chr13 44851840 44852017 -57021152 - MLT1J2 LTR MaLR -62 388 202 254 191 36 83 chr13 44852051 44852135 -57021034 - MLT1J2 LTR MaLR -304 146 67 242 260 10 0 chr13 44852236 44852336 -57020833 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 1082 275 17 8 chr13 44852616 44852925 -57020244 - L1ME3A LINE L1 -291 5879 5572 25 31 0 0 chr13 44853735 44853767 -57019402 + AT_rich Low_complexity Low_complexity 1 32 0 1300 205 66 15 chr13 44853767 44854040 -57019129 - AluJo SINE Alu -25 287 1 320 271 117 8 chr13 44855914 44856044 -57017125 - MIR SINE MIR -69 139 44 194 188 0 21 chr13 44856054 44856102 -57017067 + (CA)n Simple_repeat Simple_repeat 2 48 0 253 340 37 27 chr13 44857006 44857194 -57015975 - L2 LINE L2 0 3313 3124 236 224 35 59 chr13 44858251 44858336 -57014833 - MLT1J LTR MaLR 0 511 429 308 200 73 82 chr13 44858389 44858499 -57014670 - MLT1J LTR MaLR -172 339 231 219 186 0 0 chr13 44860179 44860222 -57012947 + A-rich Low_complexity Low_complexity 1 43 0 377 314 25 0 chr13 44860762 44860883 -57012286 + L2 LINE L2 3190 3313 0 1755 88 20 0 chr13 44861250 44861499 -57011670 - L1PA13 LINE L1 -4 6159 5906 2216 86 7 0 chr13 44861499 44861802 -57011367 + L1PA13 LINE L1 5599 5903 -265 513 281 77 94 chr13 44862260 44862490 -57010679 - L1MEd LINE L1 -5084 1035 802 1866 147 18 4 chr13 44862490 44862803 -57010366 - AluSx SINE Alu 0 317 1 513 281 77 94 chr13 44862803 44863303 -57009866 - L1MEd LINE L1 -5317 802 317 272 327 33 7 chr13 44863406 44863559 -57009610 - L1MEd LINE L1 -5960 159 3 185 268 0 0 chr13 44863631 44863672 -57009497 - MIR SINE MIR -8 254 214 203 226 0 16 chr13 44864283 44864345 -57008824 + (TA)n Simple_repeat Simple_repeat 1 61 0 2624 106 3 11 chr13 44865055 44865422 -57007747 + THE1B LTR MaLR 1 364 0 247 313 93 0 chr13 44865668 44865818 -57007351 - MER117 DNA MER1_type -33 164 1 181 244 0 0 chr13 44865837 44865878 -57007291 - L2 LINE L2 -299 2973 2933 235 327 20 46 chr13 44866124 44866277 -57006892 + LTR67 LTR ERVL 9 157 -400 300 309 139 39 chr13 44866334 44866593 -57006576 + LTR67 LTR ERVL 251 535 -22 335 211 11 22 chr13 44866723 44866813 -57006356 - MER67D LTR ERV1 -120 394 306 248 125 62 21 chr13 44866859 44866907 -57006262 - MER67D LTR ERV1 -230 313 264 7907 185 51 13 chr13 44866915 44868516 -57004653 + MER52A LTR ERV1 1 1755 0 1027 153 77 70 chr13 44868516 44868771 -57004398 - MER67D LTR ERV1 -284 259 1 24 53 0 0 chr13 44869296 44869334 -57003835 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 44869498 44869520 -57003649 + AT_rich Low_complexity Low_complexity 1 22 0 262 271 0 0 chr13 44870750 44870809 -57002360 - MIR SINE MIR -1 261 203 2410 209 31 30 chr13 44870813 44871387 -57001782 - MER90 LTR ERV1 0 575 1 359 256 50 40 chr13 44871737 44871936 -57001233 + L1ME4a LINE L1 5691 5891 -230 340 278 6 18 chr13 44871962 44872131 -57001038 + L1ME4a LINE L1 5955 6121 0 28 48 0 0 chr13 44872536 44872578 -57000591 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 44872798 44872830 -57000339 + AT_rich Low_complexity Low_complexity 1 32 0 860 287 76 38 chr13 44873103 44873525 -56999644 - LTR40a LTR ERVL -2 517 80 5615 189 51 32 chr13 44874195 44874437 -56998732 + Tigger6b DNA MER2_type 2 238 -1359 1847 219 10 25 chr13 44874437 44874839 -56998330 + MSTD LTR MaLR 1 396 0 5615 189 51 32 chr13 44874839 44874984 -56998185 + Tigger6b DNA MER2_type 238 379 -1218 228 35 0 0 chr13 44874984 44875013 -56998156 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 5615 189 51 32 chr13 44875013 44875815 -56997354 + Tigger6b DNA MER2_type 379 1235 -362 1893 200 41 51 chr13 44875815 44876325 -56996844 + MLT1D LTR MaLR 1 505 0 5615 189 51 32 chr13 44876325 44876691 -56996478 + Tigger6b DNA MER2_type 1235 1593 -4 315 0 0 0 chr13 44876696 44876731 -56996438 + (CA)n Simple_repeat Simple_repeat 2 36 0 1297 187 4 26 chr13 44877240 44877470 -56995699 - AluJb SINE Alu -35 277 53 303 260 87 32 chr13 44878184 44878332 -56994837 - L1ME LINE L1 -296 5825 5660 2382 80 0 6 chr13 44878332 44878643 -56994526 - AluSc SINE Alu 0 309 1 303 260 87 32 chr13 44878643 44878713 -56994456 - L1ME LINE L1 -461 5660 5595 546 286 95 22 chr13 44882755 44882986 -56990183 + LTR33 LTR ERVL 131 378 -143 183 80 0 0 chr13 44883173 44883198 -56989971 + (GA)n Simple_repeat Simple_repeat 1 25 0 27 0 0 0 chr13 44883413 44883440 -56989729 + AT_rich Low_complexity Low_complexity 1 27 0 740 311 229 9 chr13 44883551 44884107 -56989062 - L2 LINE L2 0 3313 2645 314 256 152 13 chr13 44884160 44884334 -56988835 - MIR SINE MIR -63 199 5 189 121 0 0 chr13 44886337 44886370 -56986799 + (T)n Simple_repeat Simple_repeat 1 33 0 22 0 0 0 chr13 44886480 44886502 -56986667 + AT_rich Low_complexity Low_complexity 1 22 0 1480 157 89 18 chr13 44887020 44887300 -56985869 - AluJo SINE Alu 0 312 13 203 250 0 0 chr13 44887408 44887456 -56985713 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 293 277 0 0 chr13 44887653 44887718 -56985451 - L2 LINE L2 -2 3311 3247 228 271 66 16 chr13 44888106 44888228 -56984941 + L1MC/D LINE L1 5341 5468 -2340 750 247 24 0 chr13 44888379 44888545 -56984624 - L1MEc LINE L1 -6012 384 215 232 192 19 0 chr13 44888709 44888761 -56984408 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 295 278 31 25 chr13 44889387 44889404 -56983765 - L1MA10 LINE L1 -2 6332 6316 563 289 24 20 chr13 44889404 44889650 -56983519 - L1ME2 LINE L1 -9 6155 5909 284 214 69 69 chr13 44889678 44889809 -56983360 - HAL1b LINE L1 0 1348 1218 351 336 70 9 chr13 44890070 44890397 -56982772 - HAL1b LINE L1 -929 419 73 511 282 87 49 chr13 44892388 44892675 -56980494 - L2 LINE L2 0 3313 3016 648 246 18 6 chr13 44892873 44893044 -56980125 - L1ME2 LINE L1 -504 5662 5490 390 57 0 0 chr13 44893248 44893301 -56979868 + (CA)n Simple_repeat Simple_repeat 2 54 0 309 248 44 87 chr13 44893403 44893543 -56979626 - MIR3 SINE MIR -21 187 55 301 321 182 14 chr13 44896584 44896880 -56976289 + L2 LINE L2 2968 3313 0 23 54 0 0 chr13 44896941 44896978 -56976191 + AT_rich Low_complexity Low_complexity 1 37 0 933 198 60 0 chr13 44898030 44898212 -56974957 + MER20 DNA MER1_type 23 215 -4 1939 156 0 0 chr13 44898332 44898615 -56974554 + AluSx SINE Alu 1 283 -29 407 340 43 19 chr13 44898682 44898844 -56974325 - L2 LINE L2 -467 2847 2682 1565 234 113 87 chr13 44898844 44899452 -56973717 + MLT1E2 LTR MaLR 1 626 0 1594 288 96 9 chr13 44899452 44900005 -56973164 - L2 LINE L2 -628 2686 2086 2002 88 24 3 chr13 44900209 44900505 -56972664 + AluY SINE Alu 1 302 -9 181 276 40 26 chr13 44900609 44900685 -56972484 - L2 LINE L2 -607 2707 2631 238 340 94 30 chr13 44901993 44902228 -56970941 + L2 LINE L2 2365 2614 -700 23 33 0 0 chr13 44903819 44903849 -56969320 + AT_rich Low_complexity Low_complexity 1 30 0 375 322 68 24 chr13 44904328 44904533 -56968636 + MIR SINE MIR 46 259 -3 279 113 0 0 chr13 44904599 44904652 -56968517 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr13 44905111 44905134 -56968035 + AT_rich Low_complexity Low_complexity 1 23 0 270 386 34 17 chr13 44905633 44905866 -56967303 + MIR SINE MIR 20 256 -6 308 266 147 22 chr13 44905979 44906163 -56967006 + L1ME3A LINE L1 5262 5468 -706 313 283 109 11 chr13 44906330 44906514 -56966655 + L1ME3A LINE L1 5724 5925 -245 32 0 0 0 chr13 44906524 44906556 -56966613 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 44906655 44906676 -56966493 + AT_rich Low_complexity Low_complexity 1 21 0 217 139 28 0 chr13 44906815 44906851 -56966318 + (TTG)n Simple_repeat Simple_repeat 2 38 0 326 291 188 12 chr13 44907113 44907278 -56965891 + MIR SINE MIR 42 235 -27 214 272 74 37 chr13 44910320 44910401 -56962768 + L2 LINE L2 3222 3305 -8 27 29 0 0 chr13 44910430 44910464 -56962705 + AT_rich Low_complexity Low_complexity 1 34 0 1695 162 3 30 chr13 44910567 44910870 -56962299 + AluJo SINE Alu 5 299 -13 218 209 0 0 chr13 44911538 44911581 -56961588 + (CATA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr13 44912000 44912021 -56961148 + AT_rich Low_complexity Low_complexity 1 21 0 542 245 58 0 chr13 44912038 44912193 -56960976 - MLT1D LTR MaLR 0 505 342 1798 256 58 8 chr13 44912193 44912729 -56960440 + L1MD3 LINE L1 7418 7980 -15 13225 152 45 9 chr13 44912882 44915213 -56957956 + Tigger1 DNA MER2_type 1 2417 -1 30 59 0 0 chr13 44915391 44915442 -56957727 + AT_rich Low_complexity Low_complexity 1 51 0 667 215 15 0 chr13 44915556 44915686 -56957483 - AluJo SINE Alu -178 134 3 514 186 0 44 chr13 44917023 44917136 -56956033 + MER20 DNA MER1_type 1 108 -111 225 0 0 0 chr13 44917198 44917223 -56955946 + (TA)n Simple_repeat Simple_repeat 2 26 0 920 188 30 10 chr13 44917264 44917466 -56955703 - MER2 DNA MER2_type -139 206 1 541 160 130 0 chr13 44917466 44917566 -56955603 + MER20 DNA MER1_type 106 218 -1 450 250 71 36 chr13 44919742 44919910 -56953259 - MER45A DNA AcHobo 0 178 5 991 233 108 58 chr13 44920107 44920540 -56952629 - L1ME1 LINE L1 -21 6141 5686 2325 70 33 0 chr13 44920540 44920839 -56952330 + AluY SINE Alu 1 309 -2 991 233 108 58 chr13 44920839 44920892 -56952277 - L1ME1 LINE L1 -476 5686 5637 24 53 0 0 chr13 44922017 44922055 -56951114 + AT_rich Low_complexity Low_complexity 1 38 0 186 293 17 0 chr13 44924864 44924922 -56948247 + MIR SINE MIR 176 234 -28 2570 87 119 5 chr13 44926362 44926764 -56946405 + LTR7 LTR ERV1 1 448 -2 2641 80 0 3 chr13 44926766 44927139 -56946030 + HERVH LTR ERV1 1 372 -7341 * 21626 101 59 48 chr13 44927133 44930966 -56942203 + HERVH LTR ERV1 1275 5149 -2564 1356 120 19 0 chr13 44930967 44931183 -56941986 + HERVH LTR ERV1 5600 5819 -1894 * 2208 92 66 13 chr13 44931176 44931555 -56941614 + HERVH LTR ERV1 7315 7713 0 2482 89 122 10 chr13 44931555 44931958 -56941211 + LTR7 LTR ERV1 1 448 -2 21 0 0 0 chr13 44931990 44932011 -56941158 + AT_rich Low_complexity Low_complexity 1 21 0 1249 221 67 25 chr13 44933406 44933764 -56939405 + MLT1A2 LTR MaLR 2 374 0 27 0 0 26 chr13 44933948 44933966 -56939203 + AT_rich Low_complexity Low_complexity 1 18 -19 2773 13 0 0 chr13 44933966 44934272 -56938897 + AluYa5 SINE Alu 1 306 -5 27 0 0 26 chr13 44934272 44934291 -56938878 + AT_rich Low_complexity Low_complexity 18 37 0 24 0 0 0 chr13 44934476 44934500 -56938669 + AT_rich Low_complexity Low_complexity 1 24 0 214 167 0 0 chr13 44935331 44935367 -56937802 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 198 298 85 0 chr13 44935709 44935756 -56937413 + L2 LINE L2 3126 3176 -96 2399 124 88 7 chr13 44937111 44937564 -56935605 + SATR1 Satellite Satellite 1 489 0 2221 161 110 13 chr13 44937591 44940310 -56932859 + SATR1 Satellite Satellite 1 2984 0 2241 162 109 3 chr13 44940339 44941596 -56931573 + SATR1 Satellite Satellite 1 1390 0 2223 171 101 15 chr13 44941628 44948730 -56924439 - SATR1 Satellite Satellite -2 7707 1 2360 162 102 5 chr13 44948758 44952107 -56921062 - SATR1 Satellite Satellite 0 3676 1 1912 196 102 2 chr13 44952140 44952800 -56920369 - SATR1 Satellite Satellite -1 725 1 328 312 13 0 chr13 44953812 44953889 -56919280 + MIR SINE MIR 18 95 -167 3514 217 76 20 chr13 44954006 44954897 -56918272 + L1M2b LINE L1 23 963 -6246 6881 163 18 20 chr13 44954915 44956379 -56916790 + L1M2b LINE L1 1744 3204 -4005 5809 208 27 31 chr13 44956368 44956893 -56916276 + L1M2b LINE L1 3587 4113 -3095 * 2002 124 7 3 chr13 44956893 44957195 -56915974 + AluSx SINE Alu 1 303 0 5809 208 27 31 chr13 44957195 44958255 -56914914 + L1M2b LINE L1 4113 5166 -2042 1747 162 67 3 chr13 44958256 44958615 -56914554 + L1MA4A LINE L1 5917 6298 -5 481 348 42 57 chr13 44958658 44959011 -56914158 + L1ME3A LINE L1 3504 3851 -2295 665 289 106 44 chr13 44959042 44960157 -56913012 + L1ME3A LINE L1 4021 5204 -942 335 333 43 0 chr13 44960257 44960419 -56912750 + L1MEc LINE L1 159 327 -6069 1662 237 74 36 chr13 44960434 44960936 -56912233 - MLT1E LTR MaLR -14 579 59 1409 257 52 37 chr13 44960980 44961541 -56911628 + L1MEc LINE L1 325 893 -5503 3679 240 71 24 chr13 44961595 44962976 -56910193 + Charlie1a DNA MER1_type 1 1446 -9 353 271 121 30 chr13 44962986 44963152 -56910017 + L1ME3A LINE L1 5803 5983 -187 217 349 69 56 chr13 44963540 44963711 -56909458 + L2 LINE L2 999 1166 -2148 2506 113 3 0 chr13 44963711 44964065 -56909104 - THE1A LTR MaLR 0 355 1 217 349 69 56 chr13 44964065 44964443 -56908726 + L2 LINE L2 1166 1555 -1759 195 42 0 0 chr13 44964651 44964675 -56908494 + (A)n Simple_repeat Simple_repeat 1 24 0 2085 171 23 11 chr13 44964979 44965691 -56907478 - L1P4 LINE L1 -571 7033 6315 3398 217 23 33 chr13 44965704 44966915 -56906254 - L1P4 LINE L1 -4172 3412 2203 591 379 10 5 chr13 44967577 44967981 -56905188 - L1P4 LINE L1 -7166 415 10 2043 119 10 3 chr13 44967997 44968290 -56904879 - AluSx SINE Alu -13 299 5 1143 138 5 9 chr13 44968359 44968569 -56904600 - L1MA9 LINE L1 0 6312 6104 1255 177 34 96 chr13 44968569 44968958 -56904211 + MLT1A1 LTR MaLR 1 505 0 3578 165 35 28 chr13 44968958 44969251 -56903918 - L1MA9 LINE L1 -212 6100 5811 264 77 0 0 chr13 44969251 44969290 -56903879 + (TG)n Simple_repeat Simple_repeat 2 40 0 3578 165 35 28 chr13 44969290 44969758 -56903411 - L1MA9 LINE L1 -501 5811 5333 2202 220 71 23 chr13 44970143 44970792 -56902377 + L1MB7 LINE L1 5354 6033 -151 400 279 36 36 chr13 44970817 44971036 -56902133 - HAL1b LINE L1 -1041 307 89 212 308 90 77 chr13 44972793 44972949 -56900220 - L2 LINE L2 -219 3053 2896 663 352 91 20 chr13 44973500 44973949 -56899220 - L2 LINE L2 -518 2796 2316 22 35 0 0 chr13 44973997 44974026 -56899143 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 44974530 44974551 -56898618 + AT_rich Low_complexity Low_complexity 1 21 0 246 162 0 59 chr13 44976421 44976489 -56896680 - MER53 DNA DNA -20 169 106 307 288 0 0 chr13 44976495 44976575 -56896594 - L1MC4 LINE L1 -1346 6696 6617 261 180 0 0 chr13 44976770 44976820 -56896349 + (TA)n Simple_repeat Simple_repeat 2 51 0 2703 158 38 31 chr13 44977328 44977904 -56895265 - L1MC1 LINE L1 0 6333 5754 845 264 18 22 chr13 44977904 44978180 -56894989 - L1M4 LINE L1 -1009 5137 4863 261 304 76 23 chr13 44978593 44978764 -56894405 + L2 LINE L2 3134 3313 0 322 319 56 9 chr13 44978892 44979105 -56894064 - L1MC1 LINE L1 -373 5748 5526 22 35 0 0 chr13 44980245 44980274 -56892895 + AT_rich Low_complexity Low_complexity 1 29 0 245 111 0 0 chr13 44980357 44980402 -56892767 - LTR66 LTR ERVL -172 438 394 362 159 15 38 chr13 44980406 44980538 -56892631 + (TA)n Simple_repeat Simple_repeat 1 129 0 279 0 0 0 chr13 44980537 44980568 -56892601 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1902 127 22 0 chr13 44980574 44980850 -56892319 - AluSx SINE Alu -30 282 1 22 0 0 0 chr13 44980852 44980874 -56892295 + AT_rich Low_complexity Low_complexity 1 22 0 495 164 0 104 chr13 44981560 44981694 -56891475 - L1MA10 LINE L1 -3 6331 6212 316 325 86 31 chr13 44981897 44982060 -56891109 + MIR SINE MIR 14 185 -77 21 0 0 0 chr13 44982918 44982939 -56890230 + AT_rich Low_complexity Low_complexity 1 21 0 317 351 15 8 chr13 44983437 44983568 -56889601 - L1ME3A LINE L1 -219 5951 5820 357 214 7 131 chr13 44983605 44983750 -56889419 - L1ME3A LINE L1 -351 5819 5693 21 0 0 0 chr13 44983893 44983914 -56889255 + AT_rich Low_complexity Low_complexity 1 21 0 221 355 39 13 chr13 44984161 44984316 -56888853 - L2 LINE L2 -943 2371 2213 239 225 14 0 chr13 44986408 44986479 -56886690 + (TA)n Simple_repeat Simple_repeat 1 72 0 1177 213 30 0 chr13 44986651 44986932 -56886237 + L1P3 LINE L1 10 630 -5831 239 225 14 0 chr13 44988135 44988206 -56884963 + (TA)n Simple_repeat Simple_repeat 1 72 0 4063 171 25 4 chr13 44988378 44989099 -56884070 + L1PA6 LINE L1 11 746 -5400 * 31785 78 4 3 chr13 44989094 44994284 -56878885 + L1PA6 LINE L1 959 6151 -3 2098 302 71 8 chr13 44996249 44997497 -56875672 + ERVL-F LTR ERVL 1432 2787 -2977 1303 216 51 73 chr13 44997514 44997982 -56875187 - LTR40c LTR ERVL -7 458 1 337 297 16 16 chr13 44997982 44998110 -56875059 + ERVL-F LTR ERVL 2742 2869 -2616 5443 317 64 22 chr13 44998119 45000502 -56872667 + ERVL-F LTR ERVL 3272 5755 -9 974 303 80 52 chr13 45000607 45001148 -56872021 + MLT2F LTR ERVL 101 656 -7 1654 180 28 46 chr13 45001228 45001622 -56871547 + LTR8A LTR ERV1 34 420 -307 577 168 0 10 chr13 45001649 45001750 -56871419 + MSTA LTR MaLR 329 428 0 3080 153 9 7 chr13 45001750 45002294 -56870875 + MSTA-int LTR MaLR 1 502 -1078 938 189 105 55 chr13 45002296 45002534 -56870635 - LTR8A LTR ERV1 -477 250 1 634 195 89 0 chr13 45002534 45002655 -56870514 - MER39 LTR ERV1 -575 132 1 1982 161 0 0 chr13 45002739 45003038 -56870131 - AluSx SINE Alu -13 299 1 1289 96 21 5 chr13 45003063 45003250 -56869919 - MER30B DNA MER1_type 0 190 1 231 61 0 0 chr13 45003480 45003513 -56869656 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1981 121 0 11 chr13 45003518 45003800 -56869369 - AluSx SINE Alu -30 282 4 338 192 26 0 chr13 45004093 45004171 -56868998 - MER74A LTR ERVL -13 545 466 321 232 37 12 chr13 45004171 45004253 -56868916 + MLT1A1 LTR MaLR 1 84 -281 1230 230 109 22 chr13 45004254 45004900 -56868269 - MER50 LTR ERV1 -2 732 10 1217 221 71 11 chr13 45004909 45005176 -56867993 + MLT1A1 LTR MaLR 83 365 0 1111 223 58 5 chr13 45005241 45005512 -56867657 - MER74A LTR ERVL -276 346 12 203 284 81 14 chr13 45006297 45006371 -56866798 - L2 LINE L2 0 3272 3194 350 224 110 40 chr13 45006384 45006633 -56866536 - LTR48 LTR ERV1 -56 722 290 306 306 81 17 chr13 45006678 45006851 -56866318 - L2 LINE L2 -122 3191 3008 423 226 110 75 chr13 45007180 45007580 -56865589 - LTR48 LTR ERV1 -11 776 266 323 309 11 9 chr13 45007650 45007760 -56865409 - MER34 LTR ERV1 -446 96 7 1576 179 42 31 chr13 45008896 45009254 -56863915 - THE1B LTR MaLR -2 362 1 237 375 68 25 chr13 45009989 45010269 -56862900 - L2 LINE L2 -340 2974 2683 210 221 44 0 chr13 45011392 45011460 -56861709 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 200 238 0 0 chr13 45012216 45012258 -56860911 + A-rich Low_complexity Low_complexity 1 42 0 558 270 54 11 chr13 45012501 45012686 -56860483 + MER112 DNA MER1_type 67 259 -1 568 272 47 5 chr13 45013026 45013217 -56859952 + L1MC4 LINE L1 7689 7887 -155 2357 141 35 20 chr13 45013247 45013652 -56859517 - LTR57 LTR ERVL 0 411 1 8297 163 23 1 chr13 45013652 45014996 -56858173 - LTR57-int LTR ERVL 0 5343 3971 7972 147 18 13 chr13 45014984 45017235 -56855934 - LTR57-int LTR ERVL -2176 3167 858 * 3870 161 80 9 chr13 45017227 45017927 -56855242 - LTR57-int LTR ERVL -4593 750 1 * 2431 139 25 7 chr13 45017927 45018331 -56854838 - LTR57 LTR ERVL 0 411 1 272 250 54 0 chr13 45018359 45018451 -56854718 + L1MC4 LINE L1 7914 8010 -32 665 295 102 26 chr13 45018495 45019339 -56853830 + L1ME LINE L1 2869 3776 -2370 415 234 138 14 chr13 45019410 45019555 -56853614 + L1ME LINE L1 3969 4131 -2015 22 0 0 0 chr13 45019687 45019709 -56853460 + AT_rich Low_complexity Low_complexity 1 22 0 22063 189 18 33 chr13 45019894 45021029 -56852140 + L1PA11 LINE L1 1 1152 -6460 1853 132 0 4 chr13 45021029 45021294 -56851875 - AluSx SINE Alu -16 296 33 22063 189 18 33 chr13 45021294 45025569 -56847600 + L1PA11 LINE L1 1152 6073 -1539 2371 77 0 3 chr13 45025569 45025867 -56847302 + AluY SINE Alu 1 297 -14 22063 189 18 33 chr13 45025867 45027384 -56845785 + L1PA11 LINE L1 6073 7612 0 28 29 0 0 chr13 45027401 45027436 -56845733 + AT_rich Low_complexity Low_complexity 1 35 0 297 330 89 18 chr13 45027576 45028124 -56845045 + L1ME LINE L1 4734 5313 -833 309 310 35 49 chr13 45028205 45028347 -56844822 + L1ME LINE L1 5406 5545 -621 305 121 45 30 chr13 45028418 45028484 -56844685 + MLT1A1 LTR MaLR 4 70 -295 1717 104 17 8 chr13 45029065 45029306 -56843863 - AluSx SINE Alu -14 298 56 191 36 36 0 chr13 45029330 45029358 -56843811 + (TTA)n Simple_repeat Simple_repeat 2 30 0 880 182 75 0 chr13 45029360 45029519 -56843650 - AluJb SINE Alu -21 291 121 497 347 60 9 chr13 45029884 45030100 -56843069 + MIR SINE MIR 21 247 -15 32 43 0 0 chr13 45031049 45031095 -56842074 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr13 45031134 45031156 -56842013 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr13 45031292 45031324 -56841845 + AT_rich Low_complexity Low_complexity 1 32 0 30 0 0 0 chr13 45031821 45031851 -56841318 + AT_rich Low_complexity Low_complexity 1 30 0 251 286 0 33 chr13 45032055 45032146 -56841023 - MIR SINE MIR 0 262 175 999 223 51 56 chr13 45032258 45032653 -56840516 - Charlie7 DNA MER1_type -777 1835 1443 10664 195 119 25 chr13 45032746 45036735 -56836434 - L1MA4 LINE L1 -6 6476 2864 1767 149 10 27 chr13 45036735 45036892 -56836277 - AluSx SINE Alu -22 290 132 186 43 0 0 chr13 45036892 45036915 -56836254 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2248 75 3 0 chr13 45036915 45037197 -56835972 - AluY SINE Alu -28 283 1 1767 149 10 27 chr13 45037197 45037333 -56835836 - AluSx SINE Alu -178 134 1 10664 195 119 25 chr13 45037333 45039233 -56833936 - L1MA4 LINE L1 -3618 2864 14 1491 305 74 27 chr13 45039499 45040420 -56832749 - Charlie7 DNA MER1_type -1550 1062 99 311 264 16 85 chr13 45040788 45040917 -56832252 - L2 LINE L2 0 3313 3194 433 293 123 38 chr13 45041395 45041446 -56831723 + HsTC2 DNA Tc2 540 585 -1313 2029 123 10 3 chr13 45041446 45041755 -56831414 + AluSp SINE Alu 1 311 -2 433 293 123 38 chr13 45041755 45042020 -56831149 + HsTC2 DNA Tc2 585 883 -1015 2298 107 0 0 chr13 45043119 45043428 -56829741 - AluSg SINE Alu -1 309 1 1132 142 147 0 chr13 45043450 45043668 -56829501 + L1PA16 LINE L1 5908 6157 -9 4339 204 41 12 chr13 45043727 45045411 -56827758 + L1MB3 LINE L1 4442 6182 -1 39755 72 6 9 chr13 45045437 45051615 -56821554 + L1PA5 LINE L1 2 6160 0 933 338 87 37 chr13 45051620 45052572 -56820597 + Charlie2b DNA MER1_type 11 1010 -1772 761 158 8 8 chr13 45052581 45052714 -56820455 + FLAM_C SINE Alu 7 139 -4 446 276 27 32 chr13 45052715 45052900 -56820269 + Charlie2b DNA MER1_type 1011 1194 -1588 2496 52 7 3 chr13 45052902 45053210 -56819959 + AluY SINE Alu 1 309 -2 420 305 97 50 chr13 45053361 45053682 -56819487 + L2 LINE L2 2813 3148 -165 234 0 0 0 chr13 45053692 45053718 -56819451 + (CA)n Simple_repeat Simple_repeat 1 26 0 180 111 0 0 chr13 45053830 45053857 -56819312 + (GA)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr13 45054798 45054826 -56818343 + AT_rich Low_complexity Low_complexity 1 28 0 3761 181 30 9 chr13 45054910 45055698 -56817471 + L1MA8 LINE L1 5480 6284 -7 253 291 269 8 chr13 45055734 45055868 -56817301 - MER112 DNA MER1_type -89 171 3 2412 69 0 13 chr13 45056446 45056752 -56816417 + AluY SINE Alu 1 302 -9 278 260 151 45 chr13 45057055 45057221 -56815948 + MIR SINE MIR 16 191 -71 11608 130 7 13 chr13 45057707 45059653 -56813516 - L1P3 LINE L1 -2222 4239 2305 9452 114 12 1 chr13 45059656 45061029 -56812140 - L1P3 LINE L1 -5065 1396 8 268 299 104 0 chr13 45061331 45061465 -56811704 - MER104 DNA Tc2 -32 148 1 965 216 16 54 chr13 45061933 45062188 -56810981 + LTR40a LTR ERVL 1 198 -321 2618 201 20 4 chr13 45062188 45062695 -56810474 + MLT2B2 LTR ERVL 1 515 0 965 216 16 54 chr13 45062695 45062726 -56810443 + LTR40a LTR ERVL 198 229 -290 23 0 0 0 chr13 45063004 45063027 -56810142 + AT_rich Low_complexity Low_complexity 1 23 0 1959 141 3 3 chr13 45063500 45063791 -56809378 + AluSx SINE Alu 1 291 -21 977 70 11 48 chr13 45064208 45064395 -56808774 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 518 153 0 10 chr13 45064397 45064495 -56808674 + CT-rich Low_complexity Low_complexity 3 99 0 1236 244 48 77 chr13 45064732 45065187 -56807982 - LTR40b LTR ERVL -9 453 12 26 0 0 0 chr13 45065299 45065325 -56807844 + AT_rich Low_complexity Low_complexity 1 26 0 1765 117 62 88 chr13 45066418 45066803 -56806366 + THE1C LTR MaLR 1 375 0 8146 38 2 14 chr13 45066843 45068294 -56804875 - L1PA4 LINE L1 -1 6154 4717 2551 65 0 0 chr13 45068294 45068604 -56804565 - AluY SINE Alu -1 310 1 8146 38 2 14 chr13 45068604 45068946 -56804223 - L1PA4 LINE L1 -1438 4717 4372 183 218 18 55 chr13 45070113 45070168 -56803001 + L2 LINE L2 2486 2538 -776 195 227 146 55 chr13 45072147 45072257 -56800912 + MIR SINE MIR 81 200 -62 183 242 242 0 chr13 45072360 45072422 -56800747 + MIR SINE MIR 173 249 -13 183 242 0 0 chr13 45072390 45072423 -56800746 + L2 LINE L2 3263 3295 -18 195 361 0 0 chr13 45073190 45073251 -56799918 - L3b LINE CR1 -3 1580 1520 12911 103 2 3 chr13 45074086 45076776 -56796393 + L1PA7 LINE L1 3455 6167 0 1975 116 11 0 chr13 45076780 45077056 -56796113 + AluSg SINE Alu 1 279 -31 180 111 0 0 chr13 45077061 45077088 -56796081 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1256 158 130 12 chr13 45079572 45079825 -56793344 + AluJo SINE Alu 27 309 -3 257 319 0 26 chr13 45079829 45079945 -56793224 + GA-rich Low_complexity Low_complexity 3 115 0 471 319 32 11 chr13 45079985 45080170 -56792999 - MLT1I LTR MaLR -120 289 101 2266 99 7 0 chr13 45080802 45081104 -56792065 + AluSq SINE Alu 1 304 -9 39 0 0 0 chr13 45083341 45083380 -56789789 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 45083513 45083534 -56789635 + AT_rich Low_complexity Low_complexity 1 21 0 381 348 96 39 chr13 45083660 45084120 -56789049 + L2 LINE L2 694 1179 -2135 851 184 44 0 chr13 45084360 45084518 -56788651 - MER63A DNA MER1_type -45 165 1 766 278 46 23 chr13 45084608 45084957 -56788212 - L1M4 LINE L1 -3647 2499 2143 225 333 11 0 chr13 45085400 45085487 -56787682 + L1MB8 LINE L1 2151 2238 -3908 24 32 0 0 chr13 45086790 45086821 -56786348 + AT_rich Low_complexity Low_complexity 1 31 0 191 277 0 21 chr13 45087222 45087269 -56785900 + L2 LINE L2 3265 3310 -3 501 112 56 128 chr13 45088170 45088295 -56784874 - LTR9B LTR ERV1 -84 560 445 552 288 6 40 chr13 45089385 45089562 -56783607 + MER5B DNA MER1_type 7 177 -1 324 366 0 8 chr13 45089994 45090128 -56783041 + L2 LINE L2 1164 1296 -2018 3758 215 75 5 chr13 45090144 45091936 -56781233 + L1MB8 LINE L1 4263 6177 -1 894 286 114 45 chr13 45091937 45092555 -56780614 + L2 LINE L2 1302 2624 -690 745 285 170 25 chr13 45092577 45093065 -56780104 - HAL1 LINE L1 -1893 614 56 520 313 109 60 chr13 45093117 45093485 -56779684 + L2 LINE L2 1825 2210 -1104 966 177 6 0 chr13 45093497 45093655 -56779514 + FRAM SINE Alu 1 153 -23 22 35 0 0 chr13 45093656 45093685 -56779484 + AT_rich Low_complexity Low_complexity 1 29 0 369 291 74 48 chr13 45093697 45093886 -56779283 + L2 LINE L2 2225 2418 -896 234 340 62 7 chr13 45093895 45094039 -56779130 + L2 LINE L2 2722 2873 -441 249 324 64 35 chr13 45094523 45094696 -56778473 - L2 LINE L2 -1217 2097 1920 350 339 8 8 chr13 45094986 45095107 -56778062 - MER5B DNA MER1_type -54 124 4 362 331 66 7 chr13 45096617 45096753 -56776416 + MER5A DNA MER1_type 43 186 -3 186 349 0 16 chr13 45096771 45096834 -56776335 + MIR SINE MIR 17 78 -130 1353 183 17 12 chr13 45097272 45097512 -56775657 + AluJo SINE Alu 1 241 -71 3978 142 22 42 chr13 45097512 45098780 -56774389 + pTR5 LTR ERV1 743 2295 -143 352 109 0 0 chr13 45098794 45098840 -56774329 + AluJo SINE Alu 240 285 -17 2271 92 0 10 chr13 45100246 45100560 -56772609 + AluY SINE Alu 1 311 0 287 220 104 46 chr13 45101226 45101399 -56771770 + MER53 DNA DNA 7 189 0 1701 39 0 0 chr13 45101423 45101631 -56771538 - L1PA4 LINE L1 0 6155 5948 274 298 113 48 chr13 45101887 45102055 -56771114 + MIR SINE MIR 84 262 0 26 0 0 0 chr13 45104108 45104134 -56769035 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr13 45104437 45104473 -56768696 + AT_rich Low_complexity Low_complexity 1 36 0 224 266 48 65 chr13 45104997 45105121 -56768048 - MIR SINE MIR -27 235 114 640 287 0 59 chr13 45105182 45105419 -56767750 + MIR SINE MIR 9 231 -31 310 349 95 9 chr13 45105887 45106202 -56766967 - L1ME3A LINE L1 -222 5948 5607 944 214 24 71 chr13 45106212 45106510 -56766659 - MLT1D LTR MaLR -3 502 244 1229 249 52 6 chr13 45108263 45108593 -56764576 - MER2 DNA MER2_type 0 345 1 278 354 49 6 chr13 45111146 45111310 -56761859 - L2 LINE L2 -221 3051 2881 238 138 25 38 chr13 45111497 45111577 -56761592 + CT-rich Low_complexity Low_complexity 3 81 0 227 262 68 29 chr13 45112108 45112211 -56760958 - L1ME LINE L1 -457 5664 5558 215 303 169 17 chr13 45113281 45113459 -56759710 - MIR SINE MIR -6 256 52 2064 136 36 28 chr13 45114015 45114376 -56758793 + THE1B LTR MaLR 1 364 0 2084 131 23 9 chr13 45114478 45114822 -56758347 - L1MA2 LINE L1 -20 6284 5936 6320 101 0 0 chr13 45114830 45115802 -56757367 - L1PA8 LINE L1 -1 6171 5200 344 214 0 10 chr13 45115879 45115977 -56757192 + GA-rich Low_complexity Low_complexity 2 98 0 445 250 5 107 chr13 45116315 45116511 -56756658 + MER5B DNA MER1_type 3 178 0 232 297 275 0 chr13 45116524 45116615 -56756554 - MER5A DNA MER1_type -5 184 69 1637 217 17 8 chr13 45116855 45117210 -56755959 + MLT1A1 LTR MaLR 4 361 -4 23 0 0 0 chr13 45117731 45117754 -56755415 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr13 45118406 45118448 -56754721 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr13 45118850 45118880 -56754289 + AT_rich Low_complexity Low_complexity 1 30 0 193 226 48 32 chr13 45119437 45119499 -56753670 + MIR3 SINE MIR 137 199 -9 21 0 0 0 chr13 45119777 45119798 -56753371 + AT_rich Low_complexity Low_complexity 1 21 0 39 50 0 0 chr13 45119882 45119942 -56753227 + AT_rich Low_complexity Low_complexity 1 60 0 371 215 0 0 chr13 45120307 45120372 -56752797 + MIR3 SINE MIR 111 175 -33 327 140 0 0 chr13 45120388 45120438 -56752731 - Alu SINE Alu -11 291 242 181 238 202 24 chr13 45120694 45120778 -56752391 - MIR SINE MIR 0 262 164 265 290 96 91 chr13 45121665 45122168 -56751001 + L2 LINE L2 2578 3082 -190 216 0 0 0 chr13 45123267 45123291 -56749878 + (T)n Simple_repeat Simple_repeat 1 24 0 180 231 15 77 chr13 45123726 45123791 -56749378 - L3b LINE CR1 -197 1386 1326 25 51 0 0 chr13 45124306 45124345 -56748824 + AT_rich Low_complexity Low_complexity 1 39 0 762 179 26 12 chr13 45225093 45225268 -56647901 - L1MA7 LINE L1 -28 6161 6052 35 0 0 0 chr13 45225453 45225488 -56647681 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr13 45225776 45225811 -56647358 + (TG)n Simple_repeat Simple_repeat 2 36 0 238 175 18 18 chr13 45226165 45226222 -56646947 + A-rich Low_complexity Low_complexity 6 62 0 217 346 79 20 chr13 45226719 45226820 -56646349 - L2 LINE L2 -10 3262 3156 25 0 0 0 chr13 45227687 45227712 -56645457 + AT_rich Low_complexity Low_complexity 1 25 0 1029 207 28 14 chr13 45228560 45228773 -56644396 + MER20 DNA MER1_type 4 219 0 284 221 240 0 chr13 45229182 45229286 -56643883 - MIR SINE MIR 0 262 134 387 0 0 0 chr13 45229609 45229652 -56643517 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 276 86 0 chr13 45230895 45230953 -56642216 - MIR SINE MIR -79 183 121 22 35 0 0 chr13 45231609 45231638 -56641531 + AT_rich Low_complexity Low_complexity 1 29 0 339 324 196 10 chr13 45231726 45231930 -56641239 - LTR16A LTR ERVL -17 433 192 1419 325 42 8 chr13 45232388 45232915 -56640254 - HERV16 LTR ERVL -2763 2233 1689 21 36 0 0 chr13 45232924 45232952 -56640217 + AT_rich Low_complexity Low_complexity 1 28 0 256 319 14 0 chr13 45233315 45233384 -56639785 + L2 LINE L2 1858 1927 -1387 1420 167 38 3 chr13 45233450 45233737 -56639432 - L1PB1 LINE L1 -1 6866 6570 375 23 0 0 chr13 45234291 45234335 -56638834 + (TG)n Simple_repeat Simple_repeat 2 45 0 13372 178 33 16 chr13 45234343 45239379 -56633790 - L1PB1 LINE L1 -359 6508 1392 415 332 62 12 chr13 45239428 45239684 -56633485 - HERV16 LTR ERVL -3701 1295 1027 854 214 13 0 chr13 45239896 45240055 -56633114 - AluJb SINE Alu -20 292 132 189 136 45 0 chr13 45240056 45240122 -56633047 + (TA)n Simple_repeat Simple_repeat 1 69 0 796 194 0 0 chr13 45240143 45240277 -56632892 - FLAM_C SINE Alu -9 134 1 536 362 45 25 chr13 45240607 45241008 -56632161 - HERV16 LTR ERVL -4551 445 37 313 323 11 42 chr13 45241042 45241303 -56631866 - LTR16A LTR ERVL 0 457 163 2388 80 3 0 chr13 45241620 45241919 -56631250 + AluSp SINE Alu 1 300 -13 2444 158 10 12 chr13 45242099 45242516 -56630653 - MSTA LTR MaLR -12 416 1 21 0 0 0 chr13 45242586 45242607 -56630562 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 45242962 45242993 -56630176 + AT_rich Low_complexity Low_complexity 1 31 0 302 0 26 0 chr13 45243191 45243229 -56629940 + (TG)n Simple_repeat Simple_repeat 2 40 0 1625 161 3 44 chr13 45243331 45243629 -56629540 - AluJo SINE Alu -26 286 1 1354 259 54 50 chr13 45243948 45244488 -56628681 + MLT1F LTR MaLR 1 542 0 2676 23 0 3 chr13 45245379 45245684 -56627485 - AluY SINE Alu -7 304 1 331 141 47 0 chr13 45246229 45246293 -56626876 - L1MB7 LINE L1 0 6184 6118 23 0 0 0 chr13 45246388 45246411 -56626758 + AT_rich Low_complexity Low_complexity 1 23 0 2882 290 120 38 chr13 45247480 45249079 -56624090 + L2 LINE L2 646 2375 -939 828 181 0 0 chr13 45249084 45249250 -56623919 + GA-rich Low_complexity Low_complexity 1 166 0 205 258 43 54 chr13 45249302 45249395 -56623774 + L2 LINE L2 2398 2489 -825 513 45 0 0 chr13 45249412 45249478 -56623691 - L1P LINE L1 -777 5377 5312 4887 102 7 0 chr13 45249481 45250189 -56622980 + L1PA8 LINE L1 5456 6168 -4 667 332 77 48 chr13 45250223 45250978 -56622191 + L2 LINE L2 2508 3302 -11 300 304 101 65 chr13 45251010 45251178 -56621991 + MIR SINE MIR 33 206 -56 1816 159 7 7 chr13 45252295 45252590 -56620579 - AluSq SINE Alu -18 295 1 22 35 0 0 chr13 45253372 45253401 -56619768 + AT_rich Low_complexity Low_complexity 1 29 0 895 191 82 14 chr13 45254989 45255209 -56617960 + L1MB8 LINE L1 5931 6165 -13 220 242 0 65 chr13 45255544 45255606 -56617563 + MIR SINE MIR 78 135 -127 337 333 30 12 chr13 45256045 45256210 -56616959 - MIR SINE MIR -94 168 1 530 246 78 0 chr13 45256277 45256419 -56616750 + LTR65 LTR ERV1 10 162 -507 283 289 24 0 chr13 45256657 45256740 -56616429 + LTR65 LTR ERV1 561 645 -24 344 327 57 0 chr13 45256847 45257006 -56616163 + MIR SINE MIR 92 259 -3 1727 140 61 0 chr13 45257715 45257993 -56615176 - AluSq SINE Alu -18 295 1 333 239 74 98 chr13 45258195 45258358 -56614811 - MIR SINE MIR -11 251 93 22 0 0 0 chr13 45258900 45258922 -56614247 + AT_rich Low_complexity Low_complexity 1 22 0 697 113 8 8 chr13 45259520 45259653 -56613516 + (GGAA)n Simple_repeat Simple_repeat 2 134 0 192 369 33 8 chr13 45260043 45260165 -56613004 - MER5A DNA MER1_type 0 189 65 27 0 0 0 chr13 45260719 45260746 -56612423 + AT_rich Low_complexity Low_complexity 1 27 0 780 262 117 34 chr13 45262145 45262443 -56610726 - MER5C DNA MER1_type 0 324 2 21 57 0 0 chr13 45263500 45263535 -56609634 + AT_rich Low_complexity Low_complexity 1 35 0 275 188 0 0 chr13 45263856 45263904 -56609265 - L2 LINE L2 -1 3312 3265 * 288 271 25 127 chr13 45263872 45264130 -56609039 - MIR SINE MIR -11 251 17 605 248 8 0 chr13 45264654 45264779 -56608390 + L2 LINE L2 3187 3312 -1 425 299 33 33 chr13 45265308 45265492 -56607677 + MIR SINE MIR 12 195 -67 2814 129 7 5 chr13 45265967 45266409 -56606760 + L1PB3 LINE L1 5707 6149 -5 270 81 0 0 chr13 45267005 45267042 -56606127 + (TG)n Simple_repeat Simple_repeat 2 38 0 10527 172 60 3 chr13 45267544 45269500 -56603669 + Tigger1 DNA MER2_type 1 2067 -351 456 377 33 11 chr13 45269671 45270037 -56603132 + L2 LINE L2 1718 2091 -1223 299 326 158 53 chr13 45270104 45270478 -56602691 + L2 LINE L2 2331 2743 -571 853 189 0 42 chr13 45270959 45271150 -56602019 + AluJo SINE Alu 121 303 -9 303 292 137 29 chr13 45271594 45271731 -56601438 - MIR SINE MIR -31 177 56 436 344 85 14 chr13 45272557 45272839 -56600330 + MLT1H LTR MaLR 248 549 0 1836 121 7 0 chr13 45274152 45274433 -56598736 - L1PB2 LINE L1 -1 6150 5868 23 54 0 0 chr13 45274890 45274927 -56598242 + AT_rich Low_complexity Low_complexity 1 37 0 7506 27 5 0 chr13 45277231 45278520 -56594649 + L1PA4 LINE L1 4863 6155 0 1910 252 62 50 chr13 45280220 45280755 -56592414 - L1ME1 LINE L1 -5 6161 5634 198 118 0 0 chr13 45280755 45280789 -56592380 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1910 252 62 50 chr13 45280789 45281462 -56591707 - L1ME1 LINE L1 -532 5634 4939 416 208 62 79 chr13 45281509 45281749 -56591420 - MER5C DNA MER1_type -17 307 72 1889 326 34 20 chr13 45282023 45282882 -56590287 + L1PA13 LINE L1 1 912 -5875 * 4368 247 27 35 chr13 45282861 45283563 -56589606 + L1PA13 LINE L1 1321 2027 -4770 2338 75 0 3 chr13 45283563 45283856 -56589313 + AluY SINE Alu 1 292 -19 4368 247 27 35 chr13 45283856 45285244 -56587925 + L1PA13 LINE L1 2027 3429 -3368 560 86 108 11 chr13 45285245 45285338 -56587831 + MSTA LTR MaLR 1 102 -326 2291 38 0 0 chr13 45287018 45287285 -56585884 + AluY SINE Alu 39 305 -6 225 202 0 109 chr13 45287571 45287690 -56585479 - L1MC4 LINE L1 -1324 6718 6613 203 290 14 0 chr13 45287694 45287763 -56585406 + (TA)n Simple_repeat Simple_repeat 1 70 0 180 111 0 0 chr13 45288629 45288656 -56584513 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 468 260 64 20 chr13 45288718 45288922 -56584247 + L1MC5 LINE L1 7690 7902 -59 182 325 185 20 chr13 45288975 45289126 -56584043 + L3 LINE CR1 1344 1519 -58 518 345 59 49 chr13 45289385 45289977 -56583192 + L1ME3A LINE L1 71 668 -5451 253 289 39 92 chr13 45290233 45290350 -56582819 + L1ME3A LINE L1 940 1062 -5057 2345 49 7 0 chr13 45290350 45290636 -56582533 + AluY SINE Alu 1 288 -23 253 289 39 92 chr13 45290636 45290854 -56582315 + L1ME3A LINE L1 1062 1257 -4862 24 85 0 0 chr13 45291529 45291588 -56581581 + AT_rich Low_complexity Low_complexity 1 59 0 1159 296 144 22 chr13 45291789 45292558 -56580611 + L1ME3A LINE L1 5306 6168 -2 303 310 116 32 chr13 45292706 45292990 -56580179 + L1ME3A LINE L1 2587 2894 -3235 1394 212 17 13 chr13 45293192 45293494 -56579675 + Tigger1 DNA MER2_type 1 303 -2115 * 2853 160 30 12 chr13 45293477 45293976 -56579193 + Tigger1 DNA MER2_type 1911 2418 0 24 0 0 0 chr13 45293983 45294007 -56579162 + AT_rich Low_complexity Low_complexity 1 24 0 483 344 84 27 chr13 45294134 45294645 -56578524 + L1ME3A LINE L1 3352 3891 -2238 2208 197 49 130 chr13 45294671 45295627 -56577542 - L1MA8 LINE L1 -17 6274 5396 2628 231 21 16 chr13 45295752 45296427 -56576742 - L1MA8 LINE L1 -762 5384 4707 1490 225 26 0 chr13 45296427 45296774 -56576395 + L1MD3 LINE L1 7640 7995 0 471 320 80 45 chr13 45296855 45297458 -56575711 + L1ME3A LINE L1 5307 5930 -223 24 0 0 0 chr13 45298516 45298540 -56574629 + AT_rich Low_complexity Low_complexity 1 24 0 793 268 124 31 chr13 45298820 45299175 -56573994 - L3 LINE CR1 -821 756 369 919 261 43 14 chr13 45299517 45299793 -56573376 + MLT1B LTR MaLR 8 291 -99 303 85 0 0 chr13 45299821 45299868 -56573301 + (CA)n Simple_repeat Simple_repeat 1 47 0 27 0 0 0 chr13 45300148 45300175 -56572994 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr13 45301096 45301124 -56572045 + AT_rich Low_complexity Low_complexity 1 28 0 459 185 0 0 chr13 45301238 45301330 -56571839 + CT-rich Low_complexity Low_complexity 2 93 0 832 142 31 46 chr13 45301330 45301562 -56571607 + THE1C LTR MaLR 207 375 0 1311 132 0 5 chr13 45301562 45301775 -56571394 + MSTA-int LTR MaLR 1 212 -1439 1196 233 11 82 chr13 45301775 45302152 -56571017 - LTR9 LTR ERV1 -262 350 1 4689 148 9 14 chr13 45302153 45302919 -56570250 + MSTA-int LTR MaLR 819 1580 0 1720 152 165 24 chr13 45302919 45303294 -56569875 + MSTA LTR MaLR 1 428 0 5350 223 38 40 chr13 45303307 45303725 -56569444 + L1P LINE L1 2788 3205 -2941 2745 13 0 0 chr13 45303725 45304032 -56569137 + AluYa5 SINE Alu 1 307 -4 5350 223 38 40 chr13 45304032 45304521 -56568648 + L1P LINE L1 3205 3693 -2453 243 0 0 0 chr13 45304521 45304548 -56568621 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5350 223 38 40 chr13 45304548 45305203 -56567966 + L1P LINE L1 3693 4348 -1798 680 144 284 23 chr13 45305226 45305441 -56567728 - MER4C LTR ERV1 -19 446 176 1367 181 52 44 chr13 45305492 45305835 -56567334 - MER4A LTR ERV1 -318 346 1 256 229 12 0 chr13 45305839 45305922 -56567247 + L1P LINE L1 4351 4434 -1712 393 213 53 0 chr13 45305925 45306019 -56567150 + MER3 DNA MER1_type 111 209 0 262 271 47 28 chr13 45306355 45306462 -56566707 - L1MC4 LINE L1 -1321 6721 6613 2551 59 0 0 chr13 45307298 45307618 -56565551 + L1P3 LINE L1 5484 5803 -351 220 70 47 0 chr13 45308691 45308734 -56564435 + (TG)n Simple_repeat Simple_repeat 2 46 0 25 31 0 0 chr13 45310158 45310190 -56562979 + AT_rich Low_complexity Low_complexity 1 32 0 343 233 108 0 chr13 45310272 45310315 -56562854 - L1MA10 LINE L1 -2 6332 6290 498 291 166 12 chr13 45310315 45310641 -56562528 - L1ME1 LINE L1 -48 6118 5743 278 239 0 45 chr13 45310641 45310729 -56562440 - L1MEc LINE L1 -5540 856 773 595 302 100 26 chr13 45310730 45311071 -56562098 - L1MEc LINE L1 -5760 636 271 * 3085 142 21 0 chr13 45311070 45311671 -56561498 - L1P4 LINE L1 -406 5755 5146 285 326 37 15 chr13 45311667 45311802 -56561367 - L1MEc LINE L1 -6128 268 131 * 32 0 0 0 chr13 45312347 45312379 -56560790 + AT_rich Low_complexity Low_complexity 1 32 0 1175 308 118 14 chr13 45312582 45312901 -56560268 - MLT1G LTR MaLR -27 563 170 1428 153 8 0 chr13 45312901 45313155 -56560014 + L1MA4 LINE L1 6045 6300 0 1175 308 118 14 chr13 45313155 45313345 -56559824 - MLT1G LTR MaLR -420 170 1 1220 105 6 0 chr13 45314080 45314251 -56558918 + THE1-int LTR MaLR 932 1103 -477 2280 127 6 11 chr13 45314255 45314610 -56558559 - THE1A LTR MaLR 0 355 3 11397 103 4 1 chr13 45314612 45316186 -56556983 - THE1A-int LTR MaLR 0 1580 1 2070 148 20 11 chr13 45316186 45316538 -56556631 - THE1A LTR MaLR 0 355 1 2369 75 0 10 chr13 45317066 45317374 -56555795 - AluY SINE Alu -6 305 1 266 359 61 52 chr13 45317568 45317799 -56555370 - L2 LINE L2 -45 3227 2995 30 27 0 0 chr13 45317913 45317950 -56555219 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 45318232 45318254 -56554915 + AT_rich Low_complexity Low_complexity 1 22 0 1794 240 62 18 chr13 45319232 45319720 -56553449 - LTR40a LTR ERVL -8 511 3 247 113 38 0 chr13 45319733 45319786 -56553383 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 225 0 0 0 chr13 45319786 45319811 -56553358 + (CATA)n Simple_repeat Simple_repeat 4 28 0 224 303 146 0 chr13 45320777 45320866 -56552303 - MIR SINE MIR 0 262 161 215 313 137 15 chr13 45321642 45321773 -56551396 - MIR SINE MIR -74 188 42 1374 212 103 29 chr13 45321864 45322242 -56550927 + LTR52 LTR ERVL 10 415 -6 2130 135 24 29 chr13 45322601 45322978 -56550191 - THE1C LTR MaLR 0 375 1 521 238 52 23 chr13 45324520 45324774 -56548395 - LTR37B LTR ERV1 0 426 208 1745 118 14 24 chr13 45325269 45325577 -56547592 + AluSx SINE Alu 1 305 0 1854 77 27 109 chr13 45325830 45325941 -56547228 + AluYb8 SINE Alu 9 128 -190 2220 0 0 0 chr13 45325941 45326189 -56546980 + L1PA2 LINE L1 5906 6153 -2 1854 77 27 109 chr13 45326189 45326415 -56546754 + AluYb8 SINE Alu 128 318 0 21 0 0 0 chr13 45326500 45326521 -56546648 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 45326588 45326625 -56546544 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr13 45327456 45327489 -56545680 + AT_rich Low_complexity Low_complexity 1 33 0 999 302 60 66 chr13 45327644 45328494 -56544675 + MER110A-int LTR ERV1 1295 2139 -2508 2327 156 15 38 chr13 45328496 45328972 -56544197 + LTR60 LTR ERV1 1 465 -121 927 275 25 12 chr13 45328962 45329202 -56543967 - MER21B LTR ERV1 -578 285 43 * 3468 314 77 65 chr13 45329304 45331387 -56541782 + MER110A-int LTR ERV1 2517 4623 -24 344 259 58 120 chr13 45331494 45331819 -56541350 + MER110A LTR ERV1 1 305 -163 238 178 53 20 chr13 45332120 45332272 -56540897 + (TA)n Simple_repeat Simple_repeat 1 157 0 599 72 0 0 chr13 45332513 45332596 -56540573 - L1PA8 LINE L1 0 6172 6090 441 196 49 0 chr13 45333491 45333593 -56539576 + MER3 DNA MER1_type 100 206 -3 7364 223 83 7 chr13 45333811 45336864 -56536305 - L1PA16 LINE L1 0 6154 2824 645 277 65 16 chr13 45337346 45337530 -56535639 + MER82 DNA MER2_type 458 650 -3 219 131 16 33 chr13 45337584 45337645 -56535524 + (TA)n Simple_repeat Simple_repeat 2 61 0 204 163 0 0 chr13 45337735 45337778 -56535391 + (CA)n Simple_repeat Simple_repeat 2 44 0 537 198 12 56 chr13 45337837 45337999 -56535170 - MLT2C2 LTR ERVL -226 238 84 231 226 0 19 chr13 45338135 45338188 -56534981 + L2 LINE L2 3262 3313 0 333 301 117 35 chr13 45340417 45340699 -56532470 - L1 LINE L1 -1404 4742 4438 23 33 0 0 chr13 45340792 45340822 -56532347 + AT_rich Low_complexity Low_complexity 1 30 0 1726 194 0 0 chr13 45340845 45341139 -56532030 + AluJb SINE Alu 1 294 -18 41 66 0 0 chr13 45341208 45341284 -56531885 + AT_rich Low_complexity Low_complexity 1 76 0 645 247 32 16 chr13 45341349 45341539 -56531630 - MLT1H LTR MaLR -345 204 12 359 315 31 8 chr13 45341870 45341997 -56531172 - LTR16A LTR ERVL -313 137 8 28 91 0 0 chr13 45342051 45342128 -56531041 + AT_rich Low_complexity Low_complexity 1 77 0 1229 253 40 48 chr13 45342144 45342543 -56530626 + MSTD LTR MaLR 1 396 0 26 50 0 0 chr13 45342719 45342759 -56530410 + AT_rich Low_complexity Low_complexity 1 40 0 1628 161 36 4 chr13 45342875 45343155 -56530014 + AluSx SINE Alu 3 291 -21 275 256 55 82 chr13 45343840 45344059 -56529110 - MER112 DNA MER1_type -47 213 1 1354 298 97 41 chr13 45345781 45346841 -56526328 + L1MEc LINE L1 43 1162 -5234 932 80 14 14 chr13 45346956 45347094 -56526075 + L1PA7 LINE L1 6015 6152 -2 312 286 107 50 chr13 45347340 45347480 -56525689 + L1MEd LINE L1 39 186 -5933 29 60 0 0 chr13 45347566 45347616 -56525553 + AT_rich Low_complexity Low_complexity 1 50 0 252 200 0 0 chr13 45347680 45347750 -56525419 + (TA)n Simple_repeat Simple_repeat 1 70 0 1920 256 63 30 chr13 45347754 45348531 -56524638 - L1MC4 LINE L1 -131 7911 7109 258 32 0 0 chr13 45348565 45348596 -56524573 + (TATG)n Simple_repeat Simple_repeat 3 33 0 1920 90 57 40 chr13 45349327 45349628 -56523541 + AluY SINE Alu 1 306 -5 602 220 38 13 chr13 45349732 45349891 -56523278 - MER92B LTR ERV1 -2 634 472 381 281 59 20 chr13 45349948 45350101 -56523068 - MER92B LTR ERV1 -262 374 216 11478 204 22 26 chr13 45350102 45351301 -56521868 + L1PA15-16 LINE L1 1 1203 -5646 2116 158 34 6 chr13 45351301 45351655 -56521514 - THE1B LTR MaLR 0 364 1 11147 106 6 0 chr13 45351655 45353226 -56519943 - THE1B-int LTR MaLR 0 1580 1 2184 150 31 6 chr13 45353228 45353581 -56519588 - THE1B LTR MaLR -2 362 1 11478 204 22 26 chr13 45353581 45354631 -56518538 + L1PA15-16 LINE L1 1203 2256 -4593 1959 5 0 0 chr13 45354631 45354854 -56518315 + L1PA2 LINE L1 5931 6153 -2 11478 204 22 26 chr13 45354854 45356560 -56516609 + L1PA15-16 LINE L1 2256 3715 -3134 1190 217 73 18 chr13 45356560 45356683 -56516486 + AluJo SINE Alu 1 116 -186 225 94 0 0 chr13 45356683 45356715 -56516454 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1190 217 73 18 chr13 45356715 45356877 -56516292 + AluJo SINE Alu 116 302 0 11478 204 22 26 chr13 45356877 45358137 -56515032 + L1PA15-16 LINE L1 3715 4979 -1870 1223 164 46 4 chr13 45358157 45358395 -56514774 + L1PA16 LINE L1 5917 6164 -2 30 59 0 0 chr13 45358395 45358446 -56514723 + AT_rich Low_complexity Low_complexity 1 51 0 535 212 10 12 chr13 45358840 45359029 -56514140 - MER92B LTR ERV1 -408 228 7 1842 166 10 0 chr13 45359209 45359499 -56513670 + AluSx SINE Alu 8 300 -12 232 197 13 40 chr13 45360300 45360376 -56512793 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 790 250 26 16 chr13 45363159 45363351 -56509818 + MER20 DNA MER1_type 26 219 0 25 51 0 0 chr13 45363642 45363681 -56509488 + AT_rich Low_complexity Low_complexity 1 39 0 198 244 0 0 chr13 45363783 45363824 -56509345 + L2 LINE L2 3224 3264 -8 479 346 89 30 chr13 45364041 45364480 -56508689 + L2 LINE L2 2277 2741 -573 1905 285 74 28 chr13 45365001 45366366 -56506803 + L1MEc LINE L1 2194 3585 -2630 1815 266 16 34 chr13 45366377 45367274 -56505895 + L1M2 LINE L1 2797 3636 -3212 405 331 30 22 chr13 45367286 45367531 -56505638 + L1PA13 LINE L1 3 213 -6574 * 5446 201 51 6 chr13 45367528 45367549 -56505620 + L1MEc LINE L1 4001 4020 -2195 279 79 0 0 chr13 45367549 45367587 -56505582 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5446 201 51 6 chr13 45367587 45368850 -56504319 + L1MEc LINE L1 4020 5342 -873 23 0 0 0 chr13 45368850 45368873 -56504296 + AT_rich Low_complexity Low_complexity 1 23 0 1224 194 33 35 chr13 45368922 45369254 -56503915 + L1M2 LINE L1 5222 5557 -734 5962 170 55 10 chr13 45369255 45370405 -56502764 + Tigger3b DNA MER2_type 31 1231 0 1461 277 46 29 chr13 45370454 45371168 -56502001 + L1M2 LINE L1 4185 4910 -1938 407 259 77 16 chr13 45371176 45371423 -56501746 + L1M2 LINE L1 5050 5311 -1537 3031 219 35 19 chr13 45371428 45372216 -56500953 + L1MB2 LINE L1 5369 6169 -2 709 241 141 54 chr13 45372220 45372759 -56500410 + L1M2 LINE L1 5312 5897 -951 600 248 39 78 chr13 45372794 45373100 -56500069 + L1ME2 LINE L1 5858 6151 -13 267 31 0 0 chr13 45373100 45373132 -56500037 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 228 273 15 0 chr13 45373501 45373567 -56499602 + GA-rich Low_complexity Low_complexity 3 69 0 3824 210 44 7 chr13 45373685 45374619 -56498550 - L1MB3 LINE L1 -7 6176 5208 24 53 0 0 chr13 45375209 45375247 -56497922 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 45375987 45376008 -56497161 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr13 45377457 45377480 -56495689 + (CA)n Simple_repeat Simple_repeat 1 23 0 1264 236 67 22 chr13 45377695 45378051 -56495118 - MLT1A2 LTR MaLR -2 372 1 928 212 163 23 chr13 45378242 45378506 -56494663 - AluJb SINE Alu 0 302 2 1770 154 0 30 chr13 45378509 45378814 -56494355 - AluSx SINE Alu -10 302 7 232 200 17 50 chr13 45378820 45378880 -56494289 - MER101 LTR ERV1 -37 437 380 881 191 37 104 chr13 45379079 45379320 -56493849 - MER101B LTR ERV1 -342 228 4 2398 72 3 0 chr13 45379835 45380141 -56493028 - AluY SINE Alu -4 307 1 1121 207 213 3 chr13 45380209 45380566 -56492603 - LTR54B LTR ERV1 -35 463 32 321 214 12 60 chr13 45380932 45381016 -56492153 + MER2 DNA MER2_type 2 81 -264 180 0 0 0 chr13 45381549 45381569 -56491600 + (A)n Simple_repeat Simple_repeat 1 20 0 355 346 109 43 chr13 45381640 45382520 -56490649 - L2 LINE L2 -4 3309 2354 368 267 47 60 chr13 45382531 45382681 -56490488 - L2 LINE L2 -505 2809 2662 339 226 38 90 chr13 45382874 45383007 -56490162 - L1MC4 LINE L1 -1303 6739 6614 326 194 0 126 chr13 45382960 45383063 -56490106 + L1MC4 LINE L1 6614 6703 -1339 * 962 179 29 92 chr13 45383074 45383314 -56489855 - MER67D LTR ERV1 -287 227 3 249 135 27 0 chr13 45383703 45383740 -56489429 + Tigger1 DNA MER2_type 2380 2417 -1 360 0 0 0 chr13 45383740 45383780 -56489389 + (CA)n Simple_repeat Simple_repeat 2 41 0 187 218 11 11 chr13 45383781 45383868 -56489301 + (TA)n Simple_repeat Simple_repeat 1 87 0 518 286 0 0 chr13 45384197 45384316 -56488853 - MER3 DNA MER1_type -90 119 1 597 343 19 0 chr13 45385123 45385333 -56487836 - MIR SINE MIR -26 236 23 1536 195 29 19 chr13 45385454 45385762 -56487407 + MLT1A1 LTR MaLR 1 311 -54 570 255 121 31 chr13 45385807 45386097 -56487072 - Tigger8 DNA MER2_type -204 462 147 424 143 14 0 chr13 45387138 45387208 -56485961 + MLT1A1 LTR MaLR 295 365 0 562 191 0 18 chr13 45387580 45387690 -56485479 - MLT1E2 LTR MaLR 0 626 519 3475 169 43 22 chr13 45387694 45387905 -56485264 - MER50 LTR ERV1 -24 710 505 243 0 0 0 chr13 45387905 45387932 -56485237 + (TA)n Simple_repeat Simple_repeat 1 27 0 2483 62 10 0 chr13 45387932 45388239 -56484930 - AluSq SINE Alu -3 310 1 3475 169 43 22 chr13 45388239 45388719 -56484450 - MER50 LTR ERV1 -228 506 3 2157 136 15 6 chr13 45388721 45389051 -56484118 - MER50-int LTR ERV1 -8 7197 6865 440 72 75 15 chr13 45389037 45389117 -56484052 + MER41-int LTR ERV1 4644 5352 -1235 * 1272 120 9 1 chr13 45389121 45389390 -56483779 + L1PA10 LINE L1 5171 5440 -691 2234 92 3 3 chr13 45389395 45389687 -56483482 + AluY SINE Alu 5 296 -15 852 181 0 0 chr13 45389689 45389838 -56483331 + AluSg/x SINE Alu 135 283 -29 4999 97 9 15 chr13 45389838 45390584 -56482585 + L1PA10 LINE L1 5423 6164 -4 1290 69 29 0 chr13 45390585 45390759 -56482410 + MER41-int LTR ERV1 4710 4888 -1058 1846 186 14 6 chr13 45390759 45391114 -56482055 - MER50 LTR ERV1 -376 358 1 659 246 127 131 chr13 45391114 45391198 -56481971 - MLT1E2 LTR MaLR -121 505 422 186 43 0 0 chr13 45391198 45391221 -56481948 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 659 246 127 131 chr13 45391221 45391640 -56481529 - MLT1E2 LTR MaLR -204 422 1 25 0 0 0 chr13 45392441 45392466 -56480703 + AT_rich Low_complexity Low_complexity 1 25 0 244 287 16 101 chr13 45392875 45393004 -56480165 - L2 LINE L2 -18 3254 3137 1101 256 31 5 chr13 45394247 45394666 -56478503 + L1MC4 LINE L1 7071 7552 -490 5810 170 16 25 chr13 45394670 45395829 -56477340 - L1MC1 LINE L1 0 6333 5184 22 56 0 0 chr13 45395850 45395886 -56477283 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr13 45395944 45395982 -56477187 + AT_rich Low_complexity Low_complexity 1 38 0 2873 109 13 29 chr13 45396133 45396584 -56476585 + MLT2A1 LTR ERVL 1 444 0 300 243 14 0 chr13 45396593 45396667 -56476502 + L1MC4 LINE L1 7941 8015 -27 395 316 68 79 chr13 45396704 45397257 -56475912 - L2 LINE L2 -70 3243 2687 209 160 0 40 chr13 45397466 45397516 -56475653 + (TATG)n Simple_repeat Simple_repeat 3 50 0 192 163 0 0 chr13 45399591 45399634 -56473535 + (TA)n Simple_repeat Simple_repeat 1 43 0 6767 211 119 59 chr13 45399635 45400162 -56473007 - L1MC3 LINE L1 -24 7761 7268 340 277 21 11 chr13 45400162 45400256 -56472913 - MLT1F1 LTR MaLR -428 139 45 6767 211 119 59 chr13 45400256 45401177 -56471992 - L1MC3 LINE L1 -517 7268 6405 2196 181 54 10 chr13 45401177 45401587 -56471582 - MSTA LTR MaLR 0 428 1 6767 211 119 59 chr13 45401587 45402244 -56470925 - L1MC3 LINE L1 -1380 6405 5428 922 168 48 6 chr13 45402245 45402412 -56470757 + MER58A DNA MER1_type 45 218 -6 28 48 0 0 chr13 45402508 45402550 -56470619 + AT_rich Low_complexity Low_complexity 1 42 0 339 202 0 0 chr13 45402624 45402708 -56470461 + (TA)n Simple_repeat Simple_repeat 1 84 0 302 311 0 0 chr13 45402713 45402803 -56470366 - L1MC4 LINE L1 -1339 6703 6614 * 312 294 0 22 chr13 45402773 45402865 -56470304 - L1MC4 LINE L1 -1339 6703 6614 326 266 0 43 chr13 45402873 45402967 -56470202 - L1MC4 LINE L1 -1339 6703 6614 320 286 0 22 chr13 45402950 45403041 -56470128 - L1MC4 LINE L1 -1340 6702 6614 * 219 289 133 0 chr13 45404020 45404103 -56469066 + L3b LINE CR1 1288 1381 -202 180 182 0 0 chr13 45404130 45404174 -56468995 + T-rich Low_complexity Low_complexity 2 45 0 195 313 146 7 chr13 45404578 45404722 -56468447 - MIR SINE MIR -1 261 98 22 35 0 0 chr13 45404867 45404896 -56468273 + AT_rich Low_complexity Low_complexity 1 29 0 418 362 21 16 chr13 45405590 45405778 -56467391 + MIR SINE MIR 62 250 -12 530 211 88 0 chr13 45405797 45405911 -56467258 - FLAM_C SINE Alu -19 124 1 35 24 0 0 chr13 45406028 45406070 -56467099 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr13 45406596 45406623 -56466546 + AT_rich Low_complexity Low_complexity 1 27 0 254 333 58 10 chr13 45406784 45406991 -56466178 + L1MB7 LINE L1 5471 5687 -434 1146 179 13 9 chr13 45407036 45407260 -56465909 - L1PA16 LINE L1 0 6166 5942 4516 182 33 10 chr13 45407280 45408617 -56464552 - L1PA16 LINE L1 -9 6157 4783 2821 161 14 8 chr13 45408620 45409117 -56464052 - L1PA16 LINE L1 -230 5936 5437 187 250 31 0 chr13 45409428 45409492 -56463677 + MIR SINE MIR 153 218 -44 24 77 0 0 chr13 45409808 45409860 -56463309 + AT_rich Low_complexity Low_complexity 1 52 0 1923 152 0 19 chr13 45410134 45410450 -56462719 + AluSx SINE Alu 1 310 -2 1185 97 40 57 chr13 45510894 45511140 -56362029 + L1PA10 LINE L1 5946 6168 0 731 273 55 22 chr13 45511151 45511422 -56361747 + L1MB7 LINE L1 5829 6108 -76 3742 231 52 29 chr13 45511717 45512727 -56360442 + MER45B DNA AcHobo 2 1035 -5 328 182 0 0 chr13 45513204 45513270 -56359899 + MER2 DNA MER2_type 130 195 -150 1875 161 58 8 chr13 45513500 45513860 -56359309 - L1PA16 LINE L1 0 6166 5789 3075 110 10 37 chr13 45513861 45514351 -56358818 + L1PA16 LINE L1 5323 5799 -367 1902 152 7 7 chr13 45514494 45514832 -56358337 + AluSx SINE Alu 3 340 0 222 359 76 36 chr13 45515246 45515522 -56357647 + L2 LINE L2 871 1157 -2157 234 164 36 0 chr13 45515612 45515688 -56357481 + T-rich Low_complexity Low_complexity 1 78 0 954 232 168 2 chr13 45515787 45516054 -56357115 - MER67D LTR ERV1 -78 436 155 279 336 125 52 chr13 45516204 45516844 -56356325 + L2 LINE L2 1940 2626 -688 407 339 16 0 chr13 45518872 45518993 -56354176 - L2 LINE L2 -219 3053 2931 514 273 94 88 chr13 45519276 45519752 -56353417 + MER20B DNA MER1_type 32 510 -273 1949 75 0 126 chr13 45520160 45520478 -56352691 + AluSc SINE Alu 1 278 -31 272 301 37 37 chr13 45520720 45520856 -56352313 + L2 LINE L2 1672 1807 -1507 216 298 0 24 chr13 45520857 45520941 -56352228 + L2 LINE L2 2128 2209 -1105 429 20 0 0 chr13 45520941 45520991 -56352178 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 679 248 190 35 chr13 45520992 45521282 -56351887 + L2 LINE L2 2540 2874 -440 244 330 230 5 chr13 45521426 45521617 -56351552 + L2 LINE L2 3079 3312 -1 30 27 0 0 chr13 45521720 45521757 -56351412 + AT_rich Low_complexity Low_complexity 1 37 0 973 267 75 35 chr13 45522085 45522459 -56350710 - MSTD LTR MaLR -5 391 3 32 26 0 0 chr13 45522479 45522518 -56350651 + AT_rich Low_complexity Low_complexity 1 39 0 472 279 39 64 chr13 45522811 45523044 -56350125 + L1ME1 LINE L1 139 365 -6199 2549 239 116 46 chr13 45523074 45524220 -56348949 + L1ME1 LINE L1 698 1762 -4802 2012 118 31 3 chr13 45524220 45524508 -56348661 - AluSx SINE Alu -16 296 1 2549 239 116 46 chr13 45524508 45525176 -56347993 + L1ME1 LINE L1 1762 2381 -4183 1733 181 40 3 chr13 45525176 45525524 -56347645 + MER46B DNA MER2_type 1 236 0 2549 239 116 46 chr13 45525524 45526132 -56347037 + L1ME1 LINE L1 2381 3381 -3183 346 277 77 15 chr13 45526258 45526388 -56346781 - L2 LINE L2 -1013 2301 2164 227 164 16 0 chr13 45527069 45527130 -56346039 + (TA)n Simple_repeat Simple_repeat 1 62 0 200 163 23 0 chr13 45527170 45527213 -56345956 + (TA)n Simple_repeat Simple_repeat 2 45 0 231 119 0 0 chr13 45527213 45527255 -56345914 - LTR66 LTR ERVL -171 439 398 226 146 0 0 chr13 45527266 45527307 -56345862 - LTR66 LTR ERVL -172 438 398 232 200 0 0 chr13 45527315 45527365 -56345804 + LTR66 LTR ERVL 398 447 -163 209 196 0 39 chr13 45527396 45527447 -56345722 + A-rich Low_complexity Low_complexity 2 50 0 1224 240 58 49 chr13 45527453 45527734 -56345435 + MER90 LTR ERV1 75 363 -251 1790 210 63 50 chr13 45527734 45528238 -56344931 + MER67D LTR ERV1 1 511 -3 1224 240 58 49 chr13 45528238 45528385 -56344784 + MER90 LTR ERV1 363 507 -107 210 323 15 15 chr13 45528742 45528807 -56344362 - L2 LINE L2 -230 3042 2978 3184 257 95 20 chr13 45528881 45531033 -56342136 + L1ME1 LINE L1 3929 6258 -326 278 141 115 51 chr13 45531020 45531098 -56342071 - L1P LINE L1 -1426 4720 4638 * 3105 161 11 2 chr13 45531071 45531625 -56341544 + L1P LINE L1 4714 5272 -874 566 76 13 0 chr13 45533068 45533147 -56340022 + MADE1 DNA Mariner 1 80 0 28 48 0 0 chr13 45533674 45533716 -56339453 + AT_rich Low_complexity Low_complexity 1 42 0 1852 171 14 17 chr13 45534647 45535009 -56338160 - MER46B DNA MER2_type 0 236 1 1024 65 0 0 chr13 45535087 45535211 -56337958 + AluSp SINE Alu 1 124 -189 4758 173 46 14 chr13 45536038 45536394 -56336775 - L1PB4 LINE L1 -20 6136 5793 279 0 0 0 chr13 45536394 45536425 -56336744 + (TG)n Simple_repeat Simple_repeat 2 32 0 4758 173 46 14 chr13 45536425 45537638 -56335531 - L1PB4 LINE L1 -363 5793 4534 253 298 101 17 chr13 45537756 45537934 -56335235 + HAL1b LINE L1 415 607 -741 2334 239 104 23 chr13 45538153 45539692 -56333477 + L1MB7 LINE L1 4497 6174 -10 2281 36 0 0 chr13 45539737 45540012 -56333157 - L1PA5 LINE L1 -4 6150 5876 2258 173 105 3 chr13 45540025 45541330 -56331839 - SATR1 Satellite Satellite 0 1438 1 262 117 106 21 chr13 45541332 45541426 -56331743 + (TTAA)n Simple_repeat Simple_repeat 4 105 0 403 230 6 40 chr13 45541450 45541624 -56331545 + (TAA)n Simple_repeat Simple_repeat 2 169 0 31 82 0 0 chr13 45541634 45541707 -56331462 + AT_rich Low_complexity Low_complexity 1 73 0 1874 206 91 2 chr13 45541719 45542287 -56330882 + SATR1 Satellite Satellite 1 618 -92 2133 165 92 55 chr13 45542316 45543179 -56329990 + SATR1 Satellite Satellite 1 894 -1 2158 198 126 6 chr13 45543207 45544298 -56328871 + SATR1 Satellite Satellite 1 1221 -91 380 321 79 60 chr13 45544570 45545050 -56328119 + L1ME LINE L1 12 500 -5570 * 1008 278 94 69 chr13 45545035 45545438 -56327731 + L1ME1 LINE L1 94 485 -5585 1339 189 83 27 chr13 45545438 45545776 -56327393 + MLT1A1 LTR MaLR 5 361 -4 1008 278 94 69 chr13 45545776 45546258 -56326911 + L1ME1 LINE L1 485 1001 -5069 1888 193 120 5 chr13 45546302 45546728 -56326441 + L1PA16 LINE L1 5676 6150 -16 679 315 57 38 chr13 45546745 45547436 -56325733 + L1ME1 LINE L1 1005 1742 -4406 648 236 49 52 chr13 45547427 45547775 -56325394 + L1ME1 LINE L1 2892 3238 -2842 * 1936 93 6 93 chr13 45547779 45548103 -56325066 + AluSx SINE Alu 1 296 -16 1930 258 69 28 chr13 45548140 45548946 -56324223 + L1ME1 LINE L1 5222 6100 0 335 320 31 89 chr13 45548980 45549205 -56323964 + MLT1L LTR MaLR 326 537 -78 279 79 0 0 chr13 45549205 45549243 -56323926 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 1055 177 0 30 chr13 45549379 45549577 -56323592 - AluJo SINE Alu -120 192 1 4076 153 23 7 chr13 45549650 45550350 -56322819 + MER50 LTR ERV1 1 711 -23 2084 124 0 0 chr13 45550487 45550786 -56322383 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr13 45551744 45551766 -56321403 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 45551850 45551880 -56321289 + AT_rich Low_complexity Low_complexity 1 30 0 266 298 0 58 chr13 45552302 45552406 -56320763 + L2 LINE L2 109 206 -3108 322 276 18 111 chr13 45552472 45552689 -56320480 + L2 LINE L2 3112 3308 -5 21 57 0 0 chr13 45554507 45554542 -56318627 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 45555464 45555486 -56317683 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 45555827 45555856 -56317313 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 45555894 45555933 -56317236 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr13 45556149 45556171 -56316998 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 45557253 45557277 -56315892 + AT_rich Low_complexity Low_complexity 1 24 0 209 241 0 17 chr13 45557448 45557506 -56315663 + (TA)n Simple_repeat Simple_repeat 2 58 0 2343 226 22 11 chr13 45557818 45558357 -56314812 + MER89 LTR ERV1 1 545 -14 180 277 11 85 chr13 45558794 45558888 -56314281 - L2 LINE L2 -16 3297 3211 1849 127 6 60 chr13 45559587 45559901 -56313268 + AluSx SINE Alu 1 297 -15 27 81 0 0 chr13 45560149 45560211 -56312958 + AT_rich Low_complexity Low_complexity 1 62 0 3320 176 59 33 chr13 45560285 45560950 -56312219 + MER54B LTR ERVL 1 682 -111 870 195 33 118 chr13 45561311 45561583 -56311586 + AluJo SINE Alu 10 258 -54 6362 89 8 3 chr13 45561648 45561884 -56311285 + L1PA10 LINE L1 4291 4524 -1644 3317 137 2 4 chr13 45561884 45562396 -56310773 - MER9 LTR ERVK 0 511 1 6362 89 8 3 chr13 45562396 45564028 -56309141 + L1PA10 LINE L1 4524 6164 -4 1511 331 73 26 chr13 45564058 45564710 -56308459 - L2 LINE L2 -337 2977 2269 1811 136 18 4 chr13 45564710 45565018 -56308151 - AluSx SINE Alu 0 312 1 1511 331 73 26 chr13 45565018 45565258 -56307911 - L2 LINE L2 -1045 2269 2042 1886 190 5 19 chr13 45566040 45566409 -56306760 + THE1B LTR MaLR 1 364 0 11517 100 2 4 chr13 45566409 45567992 -56305177 + THE1B-int LTR MaLR 1 1580 0 1934 150 36 22 chr13 45567992 45568351 -56304818 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr13 45569854 45569883 -56303286 + AT_rich Low_complexity Low_complexity 1 29 0 201 154 0 0 chr13 45569987 45570026 -56303143 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 230 247 39 52 chr13 45572142 45572219 -56300950 - MER5A DNA MER1_type -14 175 100 1493 241 62 10 chr13 45572531 45572977 -56300192 + L1ME1 LINE L1 5681 6143 -23 368 329 32 28 chr13 45573502 45573718 -56299451 - L2 LINE L2 -2 3311 3095 394 312 100 24 chr13 45573834 45574004 -56299165 - MIR SINE MIR -78 184 2 423 38 0 0 chr13 45575008 45575061 -56298108 + (TG)n Simple_repeat Simple_repeat 1 53 0 2252 202 19 29 chr13 45576804 45577289 -56295880 - MLT1D LTR MaLR -21 484 5 2425 174 11 22 chr13 45578362 45578821 -56294348 + MER6 DNA MER2_type 150 863 -2 202 302 73 31 chr13 45578853 45578949 -56294220 - MIR SINE MIR -47 215 116 447 178 28 19 chr13 45579036 45579143 -56294026 + MER4-int LTR ERV1 139 246 -6352 769 199 49 90 chr13 45579571 45579903 -56293266 + LTR29 LTR ERV1 265 622 0 1131 223 29 22 chr13 45579908 45580182 -56292987 + LTR29-int LTR ERV1 5 280 -6051 469 188 205 42 chr13 45580173 45580415 -56292754 + LTR29-int LTR ERV1 898 2193 -3150 * 227 355 0 0 chr13 45580423 45580485 -56292684 + tRNA-Glu-GAG tRNA tRNA 10 71 -4 1493 154 142 34 chr13 45580488 45580848 -56292321 + MER4C-int LTR ERV1 504 586 -4429 42 20 0 0 chr13 45580867 45580916 -56292253 + AT_rich Low_complexity Low_complexity 1 49 0 2411 179 27 78 chr13 45580962 45581696 -56291473 + MER4C-int LTR ERV1 2311 2922 -1958 * 2661 172 43 33 chr13 45581694 45582303 -56290866 + MER4C-int LTR ERV1 4235 4849 -3271 3471 201 112 38 chr13 45582304 45583315 -56289854 - LTR28 LTR ERV1 0 1755 1 5400 170 64 107 chr13 45583319 45585033 -56288136 + MER4C-int LTR ERV1 4944 6584 -14 848 229 69 67 chr13 45585055 45585518 -56287651 + MER4C LTR ERV1 1 464 -1 501 234 8 0 chr13 45585565 45585689 -56287480 - Charlie1 DNA MER1_type -6 2755 2631 2202 227 81 87 chr13 45586147 45587262 -56285907 - Charlie1 DNA MER1_type -161 2600 1493 484 118 0 32 chr13 45587263 45587356 -56285813 + (GGGA)n Simple_repeat Simple_repeat 3 92 0 21 57 0 0 chr13 45587559 45587594 -56285575 + AT_rich Low_complexity Low_complexity 1 35 0 602 293 180 46 chr13 45587622 45587928 -56285241 - L1M4 LINE L1 -1280 4866 4602 22 35 0 0 chr13 45587928 45587957 -56285212 + AT_rich Low_complexity Low_complexity 1 29 0 602 293 180 46 chr13 45587957 45588591 -56284578 - L1M4 LINE L1 -1544 4602 3769 32 26 0 0 chr13 45588771 45588810 -56284359 + AT_rich Low_complexity Low_complexity 1 39 0 402 21 0 0 chr13 45588944 45588991 -56284178 + (CA)n Simple_repeat Simple_repeat 1 47 0 452 357 39 47 chr13 45591306 45591791 -56281378 + L1MEc LINE L1 114 594 -5802 923 293 52 40 chr13 45591804 45592230 -56280939 + LTR40c LTR ERVL 1 431 -34 567 255 153 30 chr13 45592236 45592294 -56280875 - MSTC LTR MaLR 0 396 347 1684 147 0 0 chr13 45592294 45592563 -56280606 + AluSc SINE Alu 34 302 0 567 255 153 30 chr13 45592563 45592814 -56280355 - MSTC LTR MaLR -49 347 1 771 176 6 36 chr13 45593067 45593232 -56279937 + L1PB4 LINE L1 5992 6151 -5 230 200 33 33 chr13 45593552 45593612 -56279557 - L1MC/D LINE L1 -2008 5800 5741 23 33 0 0 chr13 45593622 45593652 -56279517 + AT_rich Low_complexity Low_complexity 1 30 0 545 351 10 5 chr13 45593692 45593894 -56279275 + HERVL40 LTR ERVL 2717 2919 -2611 26 0 0 0 chr13 45594020 45594046 -56279123 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 45594253 45594275 -56278894 + AT_rich Low_complexity Low_complexity 1 22 0 1390 309 30 13 chr13 45594374 45594917 -56278252 - MLT1H1 LTR MaLR 0 555 4 29 60 0 0 chr13 45594923 45594973 -56278196 + AT_rich Low_complexity Low_complexity 1 50 0 373 209 5 64 chr13 45594981 45595168 -56278001 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 22 0 0 0 chr13 45595715 45595737 -56277432 + AT_rich Low_complexity Low_complexity 1 22 0 482 308 10 99 chr13 45596262 45596554 -56276615 - MLT1H1 LTR MaLR -263 292 27 27 29 0 0 chr13 45596878 45596912 -56276257 + AT_rich Low_complexity Low_complexity 1 34 0 1535 188 67 12 chr13 45596933 45597274 -56275895 - MER46B DNA MER2_type 0 236 2 280 270 99 9 chr13 45597275 45597386 -56275783 - MIR SINE MIR -30 232 112 264 235 0 0 chr13 45598292 45598360 -56274809 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 207 209 0 23 chr13 45598360 45598403 -56274766 + (CATA)n Simple_repeat Simple_repeat 4 45 0 431 329 30 53 chr13 45598417 45598721 -56274448 - LTR16C LTR ERVL -26 465 169 435 355 24 32 chr13 45599013 45599422 -56273747 - MERVL LTR ERVL -192 5293 4888 2438 60 0 0 chr13 45599720 45600022 -56273147 + AluY SINE Alu 1 302 -9 909 351 88 41 chr13 45600195 45601093 -56272076 - MERVL LTR ERVL -1933 3831 2892 228 197 0 113 chr13 45601789 45601860 -56271309 + HAL1b LINE L1 432 494 -854 501 319 86 52 chr13 45602679 45603005 -56270164 + MLT1G LTR MaLR 45 381 -209 381 339 17 0 chr13 45603387 45603502 -56269667 - L2 LINE L2 -17 3255 3139 370 303 42 0 chr13 45603883 45604002 -56269167 - L2 LINE L2 -6 3307 3184 921 103 11 33 chr13 45604469 45604653 -56268516 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1538 213 86 38 chr13 45604667 45605188 -56267981 + LTR55 LTR ERV 1 546 -2 339 65 0 0 chr13 45605332 45605378 -56267791 + (CA)n Simple_repeat Simple_repeat 2 47 0 2047 135 76 15 chr13 45606355 45606696 -56266473 - THE1B LTR MaLR 0 364 3 11204 107 8 1 chr13 45606698 45608266 -56264903 - THE1B-int LTR MaLR 0 1580 1 1908 163 73 14 chr13 45608266 45608610 -56264559 - THE1B LTR MaLR 0 364 1 203 327 35 44 chr13 45608744 45608857 -56264312 - L2 LINE L2 -244 3069 2958 270 120 15 5 chr13 45608858 45608912 -56264257 - MLT1J LTR MaLR -33 461 358 945 341 113 36 chr13 45609279 45610158 -56263011 - L2 LINE L2 -412 2902 1957 501 252 14 96 chr13 45610342 45610560 -56262609 + LTR4 LTR ERV1 1 200 -396 829 217 28 49 chr13 45610742 45611028 -56262141 + LTR4 LTR ERV1 317 596 0 623 310 14 42 chr13 45611028 45611233 -56261936 - LTR16A LTR ERVL -147 303 105 430 380 40 27 chr13 45611326 45611655 -56261514 + LTR16A LTR ERVL 25 357 -93 642 343 21 21 chr13 45611718 45611951 -56261218 + HERV16 LTR ERVL 4 236 -4760 1809 260 43 46 chr13 45611984 45612569 -56260600 + MLT1E LTR MaLR 11 593 0 1016 332 13 3 chr13 45612598 45612975 -56260194 + HERV16 LTR ERVL 288 668 -4328 1613 172 13 13 chr13 45612975 45613278 -56259891 + AluJo SINE Alu 1 303 -9 851 294 32 23 chr13 45613315 45613662 -56259507 + HERV16 LTR ERVL 979 1328 -3668 24 53 0 0 chr13 45614169 45614207 -56258962 + AT_rich Low_complexity Low_complexity 1 38 0 335 355 77 21 chr13 45614319 45614553 -56258616 - L1M2 LINE L1 -4290 2559 2313 392 281 71 59 chr13 45614605 45615168 -56258001 - L1MEd LINE L1 -4880 1239 670 595 225 0 33 chr13 45615361 45615481 -56257688 + FLAM_C SINE Alu 4 119 -24 22 0 0 0 chr13 45615490 45615512 -56257657 + AT_rich Low_complexity Low_complexity 1 22 0 374 271 34 8 chr13 45615987 45616105 -56257064 + L1M4 LINE L1 14 134 -6408 * 6969 136 14 37 chr13 45616099 45617354 -56255815 + L1PA10 LINE L1 3436 4663 -1483 5466 111 44 2 chr13 45617354 45618973 -56254196 + L1PA10 LINE L1 4516 6168 0 1883 276 24 37 chr13 45618987 45620015 -56253154 + L1M4 LINE L1 1437 2544 -4100 28 0 0 0 chr13 45620595 45620623 -56252546 + AT_rich Low_complexity Low_complexity 1 28 0 590 87 154 19 chr13 45622728 45622832 -56250337 + LTR14B LTR ERVK 2 119 -489 1721 86 22 98 chr13 45622837 45623152 -56250017 + LTR14A LTR ERVK 54 344 0 2277 97 0 6 chr13 45623867 45624178 -56248991 - AluY SINE Alu -2 309 1 2265 88 0 0 chr13 45624677 45624984 -56248185 - AluY SINE Alu -3 308 2 495 152 22 0 chr13 45626707 45626837 -56246332 + L1PA8 LINE L1 6066 6197 0 7184 234 29 37 chr13 45627113 45629014 -56244155 + L1M1 LINE L1 17 1654 -5911 275 196 0 0 chr13 45629110 45629161 -56244008 + L1M1 LINE L1 841 891 -6674 262 267 86 9 chr13 45629559 45629664 -56243505 - MIR SINE MIR -10 252 140 2164 114 10 0 chr13 45630184 45630482 -56242687 + AluSp SINE Alu 1 301 -12 25 51 0 0 chr13 45631193 45631232 -56241937 + AT_rich Low_complexity Low_complexity 1 39 0 468 299 131 18 chr13 45631438 45631766 -56241403 - L1MEd LINE L1 -5256 863 499 412 197 70 49 chr13 45632264 45632406 -56240763 + L1MB8 LINE L1 6033 6177 -1 1456 228 15 42 chr13 45632854 45633254 -56239915 - MLT1B LTR MaLR -1 389 1 22 0 0 0 chr13 45633498 45633520 -56239649 + AT_rich Low_complexity Low_complexity 1 22 0 194 380 0 0 chr13 45635037 45635116 -56238053 - MIR SINE MIR -110 152 74 383 353 169 12 chr13 45635137 45635635 -56237534 + L2 LINE L2 1715 2290 -1024 827 271 82 67 chr13 45635679 45636278 -56236891 - L1ME3A LINE L1 -15 6155 5548 22 0 0 0 chr13 45637005 45637027 -56236142 + AT_rich Low_complexity Low_complexity 1 22 0 201 211 0 0 chr13 45637552 45637604 -56235565 + GA-rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr13 45638841 45638879 -56234290 + AT_rich Low_complexity Low_complexity 1 38 0 330 245 32 11 chr13 45639090 45639184 -56233985 + L2 LINE L2 2372 2467 -847 1051 298 51 12 chr13 45639599 45640112 -56233057 + MLT1E3 LTR MaLR 1 615 -9 248 200 32 0 chr13 45640145 45640270 -56232899 + (TA)n Simple_repeat Simple_repeat 2 130 0 7719 20 0 0 chr13 45640698 45641785 -56231384 + L1PA2 LINE L1 5069 6155 0 37 23 0 0 chr13 45642727 45642771 -56230398 + AT_rich Low_complexity Low_complexity 1 44 0 27 62 0 0 chr13 45643627 45643675 -56229494 + AT_rich Low_complexity Low_complexity 1 48 0 569 315 107 0 chr13 45643817 45644033 -56229136 - MIR SINE MIR -22 240 2 223 360 29 36 chr13 45644033 45644136 -56229033 + MIR SINE MIR 54 155 -107 219 69 0 0 chr13 45645343 45645372 -56227797 + (GA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr13 45645949 45645973 -56227196 + AT_rich Low_complexity Low_complexity 1 24 0 189 121 0 0 chr13 45646696 45646729 -56226440 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 227 280 136 48 chr13 45646858 45647058 -56226111 - MIR SINE MIR -32 230 17 755 275 0 0 chr13 45648553 45648720 -56224449 - FRAM SINE Alu -12 164 1 377 350 132 31 chr13 45649353 45650125 -56223044 + L2 LINE L2 1370 2219 -1095 228 351 107 19 chr13 45650327 45650635 -56222534 + L2 LINE L2 2927 3261 -52 6553 33 0 0 chr13 45651531 45652309 -56220860 - L1PA4 LINE L1 -3 6152 5375 742 32 0 0 chr13 45652306 45652400 -56220769 + L1P LINE L1 5288 5381 -774 * 26 98 0 0 chr13 45652872 45652954 -56220215 + AT_rich Low_complexity Low_complexity 1 82 0 197 350 0 0 chr13 45653896 45653956 -56219213 + L2 LINE L2 1952 2011 -1303 22 0 0 0 chr13 45654413 45654435 -56218734 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr13 45656121 45656164 -56217005 + AT_rich Low_complexity Low_complexity 1 43 0 1255 208 26 92 chr13 45656184 45656332 -56216837 - MLT1A1 LTR MaLR 0 365 209 2399 145 36 2 chr13 45656332 45656745 -56216424 - MSTA LTR MaLR 0 428 2 1255 208 26 92 chr13 45656745 45656985 -56216184 - MLT1A1 LTR MaLR -156 209 3 1151 203 22 14 chr13 45657354 45657576 -56215593 + AluJb SINE Alu 77 300 -12 410 251 77 58 chr13 45657616 45657823 -56215346 - MER106B DNA MER1_type -6 1053 843 8066 217 44 26 chr13 45657828 45657969 -56215200 + L1MA9 LINE L1 3301 3438 -2874 3683 31 2 0 chr13 45657969 45658412 -56214757 + L1PA4 LINE L1 5701 6145 -10 8066 217 44 26 chr13 45658412 45661186 -56211983 + L1MA9 LINE L1 3438 6274 -38 233 206 69 0 chr13 45661218 45661320 -56211849 - MER106B DNA MER1_type -198 861 753 2084 72 0 22 chr13 45662212 45662490 -56210679 + AluY SINE Alu 40 311 0 25 31 0 0 chr13 45662570 45662602 -56210567 + AT_rich Low_complexity Low_complexity 1 32 0 2002 123 7 16 chr13 45664502 45664812 -56208357 - AluSx SINE Alu 0 312 6 25 0 0 0 chr13 45665058 45665083 -56208086 + AT_rich Low_complexity Low_complexity 1 25 0 228 277 0 0 chr13 45665731 45665778 -56207391 + C-rich Low_complexity Low_complexity 6 52 0 423 0 0 0 chr13 45665797 45665844 -56207325 + (CA)n Simple_repeat Simple_repeat 2 48 0 1404 142 56 30 chr13 45665864 45666132 -56207037 - L1PA15 LINE L1 -4 6161 5887 4989 153 11 58 chr13 45666306 45667411 -56205758 - L1PA16 LINE L1 -2 6164 5128 28 29 0 0 chr13 45667757 45667792 -56205377 + AT_rich Low_complexity Low_complexity 1 35 0 180 378 17 25 chr13 45669500 45669619 -56203550 + L3 LINE CR1 144 261 -1316 4131 151 11 20 chr13 45669643 45670142 -56203027 - L1MA7 LINE L1 0 6291 5800 351 0 0 0 chr13 45670142 45670181 -56202988 + (TG)n Simple_repeat Simple_repeat 2 40 0 4131 151 11 20 chr13 45670181 45670442 -56202727 - L1MA7 LINE L1 -491 5800 5538 697 241 124 55 chr13 45670447 45670754 -56202415 + L1 LINE L1 2834 3161 -2985 463 178 11 4 chr13 45670759 45670867 -56202302 - L1MA7 LINE L1 -764 5404 5298 1314 310 74 52 chr13 45670871 45672489 -56200680 - HAL1 LINE L1 -118 2389 736 237 312 165 43 chr13 45672525 45673082 -56200087 - HAL1 LINE L1 -1851 656 32 2266 102 3 3 chr13 45673099 45673412 -56199757 + AluSq SINE Alu 1 313 0 2883 221 49 12 chr13 45673702 45674391 -56198778 - L1MC3 LINE L1 -8 7777 7063 841 210 65 76 chr13 45674398 45674688 -56198481 - L1MC3 LINE L1 -768 7017 6731 552 254 133 48 chr13 45676226 45676640 -56196529 - L1ME3A LINE L1 -9 6161 5713 413 255 107 44 chr13 45676663 45676934 -56196235 - L1ME3A LINE L1 -579 5585 5298 6290 82 16 4 chr13 45677064 45678531 -56194638 - L1PA7 LINE L1 -3 6151 4655 180 0 0 0 chr13 45678531 45678551 -56194618 + (TTG)n Simple_repeat Simple_repeat 2 21 0 6290 82 16 4 chr13 45678551 45678577 -56194592 - L1PA7 LINE L1 -1499 4655 4631 8903 38 0 0 chr13 45678601 45680455 -56192714 - L1PA3 LINE L1 -5 6150 4296 254 319 98 18 chr13 45681172 45681335 -56191834 + MIR SINE MIR 74 249 -13 238 229 0 0 chr13 45682243 45682291 -56190878 + A-rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr13 45682299 45682327 -56190842 + AT_rich Low_complexity Low_complexity 1 28 0 396 71 0 0 chr13 45682440 45682496 -56190673 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chr13 45683762 45683793 -56189376 + AT_rich Low_complexity Low_complexity 1 31 0 4310 189 25 28 chr13 45683794 45684906 -56188263 - L1MB1 LINE L1 -1 6167 5054 702 156 0 0 chr13 45685026 45685135 -56188034 + L1PA16 LINE L1 6049 6157 -9 201 350 100 19 chr13 45685914 45686074 -56187095 + L2 LINE L2 2694 2866 -448 198 0 0 0 chr13 45687488 45687510 -56185659 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2150 122 0 6 chr13 45687516 45687827 -56185342 - AluSc SINE Alu 0 309 1 387 0 0 0 chr13 45687828 45687871 -56185298 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 693 175 0 0 chr13 45687871 45687991 -56185178 - FLAM_C SINE Alu -23 120 1 226 121 17 17 chr13 45688993 45689051 -56184118 + (TA)n Simple_repeat Simple_repeat 2 59 0 209 163 20 0 chr13 45689173 45689222 -56183947 + (TA)n Simple_repeat Simple_repeat 1 50 0 322 380 18 0 chr13 45689430 45689651 -56183518 + HERVL LTR ERVL 1909 2133 -3521 4360 223 75 19 chr13 45689719 45689843 -56183326 + Charlie1 DNA MER1_type 1429 1545 -1216 285 109 0 0 chr13 45689843 45689889 -56183280 + (CA)n Simple_repeat Simple_repeat 1 46 0 4360 223 75 19 chr13 45689889 45691013 -56182156 + Charlie1 DNA MER1_type 1545 2746 -15 1281 145 26 0 chr13 45691020 45691247 -56181922 - L1P LINE L1 -964 5182 4950 459 319 84 25 chr13 45691294 45691532 -56181637 + L2 LINE L2 2504 2755 -559 462 347 117 7 chr13 45692237 45692561 -56180608 + HERVL LTR ERVL 1743 2138 -3591 1618 189 71 16 chr13 45693190 45693513 -56179656 - MLT1A1 LTR MaLR -22 343 3 560 320 103 16 chr13 45693814 45694126 -56179043 + HERVL LTR ERVL 3288 3626 -2028 806 356 101 28 chr13 45694158 45695184 -56177985 + HERVL LTR ERVL 3667 4767 -887 265 287 11 11 chr13 45695258 45695352 -56177817 + L1ME LINE L1 5628 5721 -449 909 121 0 7 chr13 45695987 45696136 -56177033 - L1PA13 LINE L1 -1 6162 6015 714 328 61 35 chr13 45696221 45696563 -56176606 + LTR16C LTR ERVL 136 486 -5 1842 101 0 0 chr13 45696732 45696980 -56176189 - AluY SINE Alu -14 297 50 1100 52 0 0 chr13 45696980 45697114 -56176055 - AluY SINE Alu -177 134 1 22 56 0 0 chr13 45697115 45697151 -56176018 + AT_rich Low_complexity Low_complexity 1 36 0 225 94 0 0 chr13 45697763 45697795 -56175374 + (GA)n Simple_repeat Simple_repeat 2 33 0 393 22 0 0 chr13 45697953 45697999 -56175170 + (TA)n Simple_repeat Simple_repeat 1 46 0 477 0 0 0 chr13 45698048 45698101 -56175068 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 227 359 72 34 chr13 45698469 45698706 -56174463 + L2 LINE L2 2941 3186 -86 2238 112 0 0 chr13 45698756 45699061 -56174108 + AluSx SINE Alu 5 309 -3 270 0 0 0 chr13 45699292 45699322 -56173847 + (TC)n Simple_repeat Simple_repeat 2 31 0 659 207 11 81 chr13 45700219 45700393 -56172776 - MLT2D LTR ERVL 0 414 253 708 297 35 5 chr13 45700468 45700670 -56172499 - MLT1H LTR MaLR -336 213 6 213 39 0 0 chr13 45701400 45701426 -56171743 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 452 369 106 17 chr13 45701507 45702203 -56170966 - L2 LINE L2 -91 3222 2469 26 30 0 0 chr13 45703223 45703256 -56169913 + AT_rich Low_complexity Low_complexity 1 33 0 29 28 0 0 chr13 45703391 45703427 -56169742 + AT_rich Low_complexity Low_complexity 1 36 0 438 296 54 65 chr13 45703543 45703837 -56169332 + L1ME LINE L1 5484 5774 -388 252 0 0 0 chr13 45703852 45703880 -56169289 + (TAA)n Simple_repeat Simple_repeat 2 29 0 412 307 20 20 chr13 45703925 45704078 -56169091 - MIR SINE MIR -56 206 54 1167 161 21 0 chr13 45704089 45704281 -56168888 - MER7A DNA MER2_type -152 194 1 25 31 0 0 chr13 45704544 45704576 -56168593 + AT_rich Low_complexity Low_complexity 1 32 0 1902 148 24 35 chr13 45704905 45705282 -56167887 - THE1C LTR MaLR 0 375 3 998 218 59 50 chr13 45705591 45705912 -56167257 - L1MB8 LINE L1 -1 6177 5854 3303 137 16 38 chr13 45705917 45706530 -56166639 + MER4A LTR ERV1 1 600 0 529 283 64 27 chr13 45707483 45707670 -56165499 + MER70B LTR ERVL 1 194 -384 * 2301 236 19 4 chr13 45707643 45708125 -56165044 + MER70B LTR ERVL 90 578 0 209 302 116 108 chr13 45710037 45710574 -56162595 + L2 LINE L2 1371 1911 -1403 188 321 0 47 chr13 45710723 45710829 -56162340 + L2 LINE L2 1943 2043 -1271 314 292 25 8 chr13 45711080 45711200 -56161969 + MLT1I LTR MaLR 288 409 0 406 286 36 42 chr13 45711307 45711475 -56161694 + L2 LINE L2 3146 3312 -1 581 298 90 30 chr13 45714176 45714507 -56158662 + L1ME LINE L1 5296 5646 -516 270 238 76 52 chr13 45714575 45714785 -56158384 - L1M4 LINE L1 -872 5274 5060 26 50 0 0 chr13 45714785 45714825 -56158344 + AT_rich Low_complexity Low_complexity 1 40 0 306 302 86 7 chr13 45714850 45714989 -56158180 - L1M4 LINE L1 -1113 5033 4884 543 289 140 43 chr13 45715737 45716665 -56156504 + L1MEc LINE L1 764 1781 -4615 280 83 0 0 chr13 45717472 45717508 -56155661 + U2 snRNA snRNA 1 36 -152 3123 177 66 88 chr13 45717821 45718658 -56154511 + MER52A LTR ERV1 1 818 -937 992 180 8 100 chr13 45718763 45719024 -56154145 - MSTB LTR MaLR -188 238 2 42 20 0 0 chr13 45719969 45720018 -56153151 + AT_rich Low_complexity Low_complexity 1 49 0 3248 171 25 28 chr13 45720018 45720537 -56152632 - L1MA3 LINE L1 0 6305 5787 2334 87 3 0 chr13 45720537 45720847 -56152322 - AluY SINE Alu 0 311 1 3248 171 25 28 chr13 45720847 45721039 -56152130 - L1MA3 LINE L1 -518 5787 5596 21 0 0 0 chr13 45721534 45721555 -56151614 + AT_rich Low_complexity Low_complexity 1 21 0 243 256 79 43 chr13 45721575 45721592 -56151577 - L1MA10 LINE L1 -1 6333 6317 2702 222 69 25 chr13 45721592 45722235 -56150934 - L1ME1 LINE L1 -5 6161 5455 2862 6 0 0 chr13 45722235 45722548 -56150621 - AluYb8 SINE Alu -5 313 1 2702 222 69 25 chr13 45722548 45723030 -56150139 - L1ME1 LINE L1 -711 5455 4996 419 275 30 43 chr13 45723039 45723272 -56149897 + L1ME LINE L1 516 745 -5325 1283 225 124 19 chr13 45723655 45724188 -56148981 - Charlie2 DNA MER1_type 0 2862 2274 1861 187 30 7 chr13 45724191 45724624 -56148545 - L1MA4 LINE L1 0 6300 5858 21 0 0 0 chr13 45725255 45725276 -56147893 + AT_rich Low_complexity Low_complexity 1 21 0 8047 218 53 18 chr13 45725721 45728134 -56145035 + L1PA16 LINE L1 2982 5491 -675 2111 124 0 0 chr13 45728134 45728432 -56144737 + AluSc SINE Alu 1 298 -11 8047 218 53 18 chr13 45728432 45728557 -56144612 + L1PA16 LINE L1 5491 5610 -556 588 210 0 8 chr13 45728580 45728699 -56144470 + L1PA16 LINE L1 5978 6095 -71 818 86 6 123 chr13 45728717 45728884 -56144285 + L1PA8A LINE L1 5605 5746 -415 2236 160 24 10 chr13 45728985 45729397 -56143772 + L1PA16 LINE L1 5740 6157 -9 849 261 96 57 chr13 45729594 45729928 -56143241 + MLT1A2 LTR MaLR 17 363 -11 1331 161 110 51 chr13 45730078 45730432 -56142737 - THE1C LTR MaLR 0 375 1 360 26 26 51 chr13 45730436 45730514 -56142655 + (TA)n Simple_repeat Simple_repeat 1 76 0 189 326 40 91 chr13 45730747 45730922 -56142247 - L2 LINE L2 -568 2746 2581 31 26 0 0 chr13 45731080 45731118 -56142051 + AT_rich Low_complexity Low_complexity 1 38 0 501 305 174 44 chr13 45731333 45731786 -56141383 - MLT1G LTR MaLR 0 590 79 3797 253 108 22 chr13 45731839 45732072 -56141097 + L1ME1 LINE L1 3110 3322 -2824 1598 156 49 0 chr13 45732072 45732380 -56140789 + L1MA9 LINE L1 5990 6312 0 3797 253 108 22 chr13 45732380 45733946 -56139223 + L1ME1 LINE L1 3322 5063 -1083 2053 265 39 30 chr13 45734061 45734994 -56138175 + L1ME1 LINE L1 5062 6165 -1 433 272 63 31 chr13 45735161 45735352 -56137817 - MLT1D LTR MaLR -4 501 305 286 164 119 0 chr13 45735789 45735856 -56137313 - MIR SINE MIR 0 262 188 23 0 0 0 chr13 45736603 45736626 -56136543 + AT_rich Low_complexity Low_complexity 1 23 0 2955 152 39 42 chr13 45736648 45737391 -56135778 - L1MA7 LINE L1 -11 6280 5434 476 184 10 10 chr13 45737393 45737496 -56135673 - L1MA7 LINE L1 -1123 5023 4921 * 787 180 7 0 chr13 45737484 45737623 -56135546 - L1MA7 LINE L1 -2263 3883 3744 8622 69 3 11 chr13 45737744 45739328 -56133841 - L1P2 LINE L1 -377 5777 4206 361 311 157 65 chr13 45739511 45739862 -56133307 + MLT1E2 LTR MaLR 1 383 -241 1926 100 4 0 chr13 45739913 45740173 -56132996 + AluSx SINE Alu 35 295 -17 22 35 0 0 chr13 45740440 45740469 -56132700 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr13 45740559 45740592 -56132577 + AT_rich Low_complexity Low_complexity 1 33 0 837 374 72 30 chr13 45740977 45741975 -56131194 - L2 LINE L2 -590 2724 1685 266 320 72 8 chr13 45742633 45742758 -56130411 - L2 LINE L2 -1385 1929 1797 1637 191 12 6 chr13 45743287 45743623 -56129546 - L1PB4 LINE L1 0 6156 5819 829 194 0 0 chr13 45743624 45743784 -56129385 + L1PB4 LINE L1 5665 5824 -332 1002 145 0 0 chr13 45743909 45744054 -56129115 + AluSq SINE Alu 35 179 -134 1236 187 85 0 chr13 45744085 45744370 -56128799 - L1PB4 LINE L1 -365 5801 5475 225 349 24 32 chr13 45744953 45745079 -56128090 + L2 LINE L2 3170 3294 -19 186 233 0 23 chr13 45745048 45745091 -56128078 + MIR SINE MIR 219 260 -2 * 606 257 13 20 chr13 45745196 45745348 -56127821 - MIR SINE MIR -21 241 91 592 242 186 4 chr13 45745425 45745656 -56127513 - MLT1G LTR MaLR -306 284 12 258 307 20 7 chr13 45745966 45746116 -56127053 + (TA)n Simple_repeat Simple_repeat 1 152 0 270 217 0 0 chr13 45746219 45746279 -56126890 - L1ME LINE L1 -298 5823 5764 21 0 0 0 chr13 45746288 45746309 -56126860 + AT_rich Low_complexity Low_complexity 1 21 0 1762 199 46 6 chr13 45746361 45746727 -56126442 - L1PB4 LINE L1 -13 6143 5763 5116 168 35 47 chr13 45747033 45747623 -56125546 + L1MA9 LINE L1 4701 5296 -1016 414 0 0 0 chr13 45747623 45747669 -56125500 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 1654 220 61 3 chr13 45747671 45748016 -56125153 - MLT1A1 LTR MaLR 0 365 1 5116 168 35 47 chr13 45748016 45749057 -56124112 + L1MA9 LINE L1 5297 6311 -1 1988 149 22 33 chr13 45749406 45749774 -56123395 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 45750292 45750314 -56122855 + AT_rich Low_complexity Low_complexity 1 22 0 38 93 0 0 chr13 45751048 45751156 -56122013 + AT_rich Low_complexity Low_complexity 1 108 0 212 239 109 76 chr13 45751156 45751248 -56121921 - MIR3 SINE MIR -25 183 89 2111 67 0 95 chr13 45752197 45752524 -56120645 + AluSq SINE Alu 1 296 -17 417 39 0 0 chr13 45752525 45752576 -56120593 + (CA)n Simple_repeat Simple_repeat 2 52 0 927 128 34 0 chr13 45752576 45752724 -56120445 + AluSg/x SINE Alu 133 285 -27 431 221 8 0 chr13 45752724 45752846 -56120323 + (TA)n Simple_repeat Simple_repeat 2 124 0 31 44 0 0 chr13 45752979 45753024 -56120145 + AT_rich Low_complexity Low_complexity 1 45 0 1246 153 106 4 chr13 45753028 45753282 -56119887 + L1MA8 LINE L1 6010 6289 -2 24 77 0 0 chr13 45754850 45754902 -56118267 + AT_rich Low_complexity Low_complexity 1 52 0 31 0 0 0 chr13 45755505 45755536 -56117633 + AT_rich Low_complexity Low_complexity 1 31 0 1674 117 74 93 chr13 45755689 45756066 -56117103 + THE1C LTR MaLR 5 374 -1 9874 123 44 7 chr13 45756067 45757590 -56115579 + THE1C-int LTR MaLR 1 1580 0 1631 135 57 86 chr13 45757590 45757976 -56115193 + THE1C LTR MaLR 1 375 0 228 67 0 0 chr13 45758017 45758047 -56115122 + (CA)n Simple_repeat Simple_repeat 2 31 0 529 273 10 62 chr13 45759086 45759295 -56113874 + MLT1J LTR MaLR 1 198 -313 1318 151 51 40 chr13 45759437 45759742 -56113427 - THE1B LTR MaLR -24 404 1 27 0 0 0 chr13 45759884 45759911 -56113258 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 45760321 45760342 -56112827 + AT_rich Low_complexity Low_complexity 1 21 0 2078 98 3 7 chr13 45761155 45761464 -56111705 + AluSp SINE Alu 1 308 0 785 275 11 42 chr13 45761647 45761909 -56111260 - L1ME3 LINE L1 -30 6132 5879 21 0 0 0 chr13 45761925 45761946 -56111223 + AT_rich Low_complexity Low_complexity 1 21 0 708 296 49 11 chr13 45762016 45762300 -56110869 - HAL1 LINE L1 -353 2154 1860 305 347 7 13 chr13 45762368 45762518 -56110651 + GA-rich Low_complexity Low_complexity 4 152 0 496 90 0 0 chr13 45762665 45762732 -56110437 - L1P LINE L1 -917 5229 5163 * 1871 181 17 0 chr13 45762730 45763083 -56110086 + L1PA16 LINE L1 4802 5160 -986 5347 145 36 0 chr13 45763482 45763768 -56109401 + L1PA16 LINE L1 5175 5449 -717 218 32 32 0 chr13 45763768 45763799 -56109370 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 5347 145 36 0 chr13 45763799 45764458 -56108711 + L1PA16 LINE L1 5449 6157 -9 22 56 0 0 chr13 45765075 45765111 -56108058 + AT_rich Low_complexity Low_complexity 1 36 0 257 252 103 37 chr13 45765234 45765341 -56107828 - MLT1H1 LTR MaLR -6 549 436 280 395 100 32 chr13 45765420 45765861 -56107308 - L2 LINE L2 -554 2760 2290 21 71 0 0 chr13 45765989 45766031 -56107138 + AT_rich Low_complexity Low_complexity 1 42 0 277 283 20 30 chr13 45766065 45766164 -56107005 - MLT1J LTR MaLR -396 115 18 4635 258 66 39 chr13 45767188 45768986 -56104183 + L1M4 LINE L1 23 1840 -4806 1017 229 44 92 chr13 45768986 45769334 -56103835 - MLT2D LTR ERVL -7 508 86 809 169 79 11 chr13 45769334 45769356 -56103813 - Ricksha DNA DNA -2871 375 342 26589 201 36 49 chr13 45769356 45771121 -56102048 - ERVL-D LTR ERVL 0 5764 3977 1575 174 7 24 chr13 45771121 45771414 -56101755 - AluJo SINE Alu -18 294 7 26589 201 36 49 chr13 45771414 45775491 -56097678 - ERVL-D LTR ERVL -1787 3977 1 474 248 36 17 chr13 45775495 45775642 -56097527 - MLT2D LTR ERVL 0 464 249 341 191 0 29 chr13 45775642 45775710 -56097459 - ERVL LTR ERVL -5376 388 323 2149 118 21 43 chr13 45775757 45776129 -56097040 - THE1B LTR MaLR 0 364 1 10125 131 35 2 chr13 45776135 45777659 -56095510 - THE1B-int LTR MaLR -6 1574 1 2256 127 11 24 chr13 45777659 45778028 -56095141 - THE1B LTR MaLR 0 364 1 569 230 13 40 chr13 45778029 45778181 -56094988 - MLT2D LTR ERVL -201 213 66 575 323 22 4 chr13 45778182 45778414 -56094755 + L1M4 LINE L1 1845 2080 -4566 1575 179 0 50 chr13 45778439 45778740 -56094429 - AluJb SINE Alu -26 286 1 607 245 106 7 chr13 45778743 45779025 -56094144 + L1M4 LINE L1 2365 2674 -3972 2438 190 38 8 chr13 45782420 45782925 -56090244 - L1MB1 LINE L1 -33 6156 5637 1150 261 122 26 chr13 45783314 45783804 -56089365 + MLT1F LTR MaLR 5 541 -1 605 308 26 36 chr13 45783968 45784270 -56088899 + MLT1F-int LTR MaLR 308 606 -765 726 225 26 82 chr13 45784566 45784797 -56088372 + MER20 DNA MER1_type 2 219 0 268 288 60 111 chr13 45785096 45785464 -56087705 + MLT1F-int LTR MaLR 1023 1371 0 616 306 177 19 chr13 45785563 45785873 -56087296 - MLT1E LTR MaLR -8 585 227 698 285 40 0 chr13 45785894 45786094 -56087075 + MIR SINE MIR 12 219 -43 2091 145 114 5 chr13 45786094 45786480 -56086689 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr13 45786557 45786579 -56086590 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 45787151 45787193 -56085976 + AT_rich Low_complexity Low_complexity 1 42 0 859 182 25 5 chr13 45787754 45788035 -56085134 + MER2 DNA MER2_type 3 343 -2 251 191 29 48 chr13 45788059 45788164 -56085005 + (TTATA)n Simple_repeat Simple_repeat 2 104 0 2074 136 34 29 chr13 45788930 45789341 -56083828 - L1MA6 LINE L1 0 7321 6909 700 69 9 26 chr13 45789342 45789458 -56083711 + L1M LINE L1 5279 5392 -920 3105 166 32 9 chr13 45789470 45790079 -56083090 - L1MA6 LINE L1 -433 6879 6251 1273 197 45 84 chr13 45790079 45790459 -56082710 - MLT1A1 LTR MaLR 0 365 1 3105 166 32 9 chr13 45790459 45790525 -56082644 - L1MA6 LINE L1 -1061 6251 6188 751 170 164 6 chr13 45790529 45790688 -56082481 - FRAM SINE Alu 0 176 1 * 9368 247 41 33 chr13 45790688 45795599 -56077570 - L1MA6 LINE L1 -989 6178 1534 1658 216 0 0 chr13 45796629 45796930 -56076239 - AluJo SINE Alu -11 301 1 939 347 65 16 chr13 45796973 45797420 -56075749 + L2 LINE L2 1223 1691 -1623 2019 152 13 43 chr13 45797445 45797820 -56075349 - THE1B LTR MaLR 0 364 1 9353 106 83 1 chr13 45797826 45799270 -56073899 - THE1B-int LTR MaLR -17 1563 1 2258 150 5 14 chr13 45799270 45799637 -56073532 - THE1B LTR MaLR 0 364 1 320 366 24 0 chr13 45799652 45799816 -56073353 + L2 LINE L2 1735 1902 -1412 2244 119 0 0 chr13 45800077 45800372 -56072797 - AluSc SINE Alu -14 295 1 25 65 0 0 chr13 45800669 45800715 -56072454 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr13 45800761 45800789 -56072380 + AT_rich Low_complexity Low_complexity 1 28 0 4369 62 9 0 chr13 45801115 45801679 -56071490 + L1PA7 LINE L1 5581 6149 -5 317 275 231 0 chr13 45803656 45803816 -56069353 - L1ME3A LINE L1 -214 5956 5760 571 295 18 0 chr13 45803818 45803984 -56069185 - MER45A DNA AcHobo 0 178 10 21 0 0 0 chr13 45804016 45804037 -56069132 + AT_rich Low_complexity Low_complexity 1 21 0 659 118 0 17 chr13 45804432 45804551 -56068618 - L1P LINE L1 -932 5214 5098 2034 88 56 11 chr13 45805381 45805666 -56067503 - AluSq SINE Alu -15 298 1 29 70 0 0 chr13 45805675 45805732 -56067437 + AT_rich Low_complexity Low_complexity 1 57 0 277 351 137 6 chr13 45805973 45806141 -56067028 - MIR SINE MIR -10 252 63 23 33 0 0 chr13 45806733 45806763 -56066406 + AT_rich Low_complexity Low_complexity 1 30 0 4866 87 11 0 chr13 45806955 45807608 -56065561 - PABL_A LTR ERV1 0 660 1 335 273 134 27 chr13 45807610 45807797 -56065372 + MLT1I LTR MaLR 105 311 -98 1355 145 129 50 chr13 45807799 45808117 -56065052 + MER61A LTR ERV1 1 343 0 1729 181 70 43 chr13 45808117 45808603 -56064566 + MER61A-int LTR ERV1 1 499 -4718 328 136 34 91 chr13 45808646 45808734 -56064435 + MER61A-int LTR ERV1 618 700 -4517 24219 87 40 18 chr13 45808806 45812193 -56060976 + MER61A-int LTR ERV1 1412 4891 -326 201 39 0 0 chr13 45812193 45812219 -56060950 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 24219 87 40 18 chr13 45812219 45812554 -56060615 + MER61A-int LTR ERV1 4891 5217 0 1703 162 54 24 chr13 45812554 45812887 -56060282 + MER61A LTR ERV1 1 343 0 427 279 100 5 chr13 45813075 45813265 -56059904 - L2 LINE L2 -4 3309 3102 335 110 14 82 chr13 45813293 45813366 -56059803 + MLT2B3 LTR ERVL 1 68 -486 786 236 15 20 chr13 45813460 45813655 -56059514 + MLT2B3 LTR ERVL 71 264 -290 1393 147 147 60 chr13 45813655 45814008 -56059161 + LTR18B LTR ERVL 1 384 -230 443 141 104 156 chr13 45813996 45814188 -56058981 + LTR18B LTR ERVL 269 450 -164 * 1456 217 55 43 chr13 45864604 45865070 -56008099 + MER67C LTR ERV1 67 506 -8 1626 180 30 3 chr13 45865196 45865491 -56007678 + AluSx SINE Alu 1 303 -9 7092 166 79 50 chr13 45865607 45867255 -56005914 - pTR5 LTR ERV1 0 2438 743 284 327 70 13 chr13 45867278 45867434 -56005735 - MIR SINE MIR 0 262 98 21 57 0 0 chr13 45867517 45867552 -56005617 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr13 45868211 45868241 -56004928 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr13 45870254 45870283 -56002886 + AT_rich Low_complexity Low_complexity 1 29 0 582 291 24 6 chr13 45870283 45870448 -56002721 - FRAM SINE Alu -15 161 1 210 80 80 0 chr13 45871181 45871231 -56001938 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 93 111 6 chr13 45871243 45871405 -56001764 + (TA)n Simple_repeat Simple_repeat 2 180 0 24 0 0 0 chr13 45871410 45871434 -56001735 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr13 45871622 45871663 -56001506 + AT_rich Low_complexity Low_complexity 1 41 0 1746 105 18 4 chr13 45872056 45872332 -56000837 - L1P LINE L1 -789 5357 5078 * 7572 112 14 13 chr13 45872331 45874288 -55998881 + L1PA8A LINE L1 3915 6128 -3 2379 76 0 3 chr13 45876492 45876796 -55996373 + AluY SINE Alu 1 303 -8 27 49 0 0 chr13 45876988 45877029 -55996140 + AT_rich Low_complexity Low_complexity 1 41 0 2117 168 8 6 chr13 45877400 45877763 -55995406 + THE1B LTR MaLR 1 364 0 9756 115 40 39 chr13 45877768 45879341 -55993828 + THE1B-int LTR MaLR 6 1580 0 2598 107 0 3 chr13 45879343 45879706 -55993463 + THE1B LTR MaLR 3 364 0 201 122 24 24 chr13 45880454 45880495 -55992674 + (TA)n Simple_repeat Simple_repeat 2 42 0 185 327 18 0 chr13 45880901 45880952 -55992217 - L2 LINE L2 -257 3056 3005 803 210 66 28 chr13 45880952 45881133 -55992036 + MER5A DNA MER1_type 2 189 0 31 26 0 0 chr13 45881840 45881878 -55991291 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 45882860 45882882 -55990287 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 45883545 45883568 -55989601 + AT_rich Low_complexity Low_complexity 1 23 0 201 333 20 20 chr13 45884523 45884670 -55988499 + (TATATG)n Simple_repeat Simple_repeat 3 149 0 1773 251 82 37 chr13 45885451 45886849 -55986320 - L1ME1 LINE L1 -65 6896 5434 2231 168 16 9 chr13 45886891 45887314 -55985855 - L1MA8 LINE L1 -277 6014 5589 4769 168 16 108 chr13 45887331 45889457 -55983712 - L1MA5A LINE L1 -3 6294 4193 895 282 53 36 chr13 45889464 45889541 -55983628 - L1ME1 LINE L1 -1513 5428 5354 3360 32 0 0 chr13 45889541 45889941 -55983228 - L1PA4 LINE L1 -3 6152 5753 895 282 53 36 chr13 45889941 45890387 -55982782 - L1ME1 LINE L1 -1587 5354 4896 546 264 45 13 chr13 45890396 45890551 -55982618 - MLT1A2 LTR MaLR 0 374 215 1748 201 22 15 chr13 45890562 45890971 -55982198 - L1MA8 LINE L1 -841 5305 4894 760 206 41 12 chr13 45890971 45891141 -55982028 + L1MA7 LINE L1 5463 5637 -663 1589 199 14 38 chr13 45891244 45891615 -55981554 + L1MA7 LINE L1 5930 6291 0 310 206 33 54 chr13 45891673 45891765 -55981404 + L1ME3A LINE L1 6075 6164 -6 494 335 33 11 chr13 45891823 45892095 -55981074 - L1ME1 LINE L1 -4371 2751 2474 432 265 47 67 chr13 45892090 45892258 -55980911 - L1ME1 LINE L1 -4925 1914 1701 * 1226 183 88 11 chr13 45892258 45892521 -55980648 + AluJb SINE Alu 2 284 -28 432 265 47 67 chr13 45892521 45892605 -55980564 - L1ME1 LINE L1 -5138 1701 1617 336 298 57 0 chr13 45892753 45892894 -55980275 - L1ME1 LINE L1 -5002 1421 1273 1867 150 16 47 chr13 45893363 45893669 -55979500 + THE1C LTR MaLR 1 294 -81 507 73 0 0 chr13 45893669 45893737 -55979432 + (TA)n Simple_repeat Simple_repeat 1 68 0 1867 150 16 47 chr13 45893737 45893817 -55979352 + THE1C LTR MaLR 294 375 0 22 0 0 0 chr13 45895548 45895570 -55977599 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 45896307 45896332 -55976837 + AT_rich Low_complexity Low_complexity 1 25 0 197 288 50 12 chr13 45896922 45897002 -55976167 - L2 LINE L2 -68 3245 3163 467 309 96 9 chr13 45897072 45897292 -55975877 - L2 LINE L2 -135 3178 2940 28 29 0 0 chr13 45897606 45897641 -55975528 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr13 45898057 45898095 -55975074 + AT_rich Low_complexity Low_complexity 1 38 0 1910 191 84 22 chr13 45898174 45898624 -55974545 + MER66B LTR ERV1 9 486 0 24 32 0 0 chr13 45899819 45899850 -55973319 + AT_rich Low_complexity Low_complexity 1 31 0 341 337 83 51 chr13 45900759 45901133 -55972036 + L2 LINE L2 2922 3307 -6 229 327 67 0 chr13 45901841 45901945 -55971224 - MIR3 SINE MIR -15 193 83 539 278 81 17 chr13 45905472 45905645 -55967524 - MIR SINE MIR -77 185 2 687 201 77 5 chr13 45906002 45906196 -55966973 + L1MB2 LINE L1 5964 6171 0 23 0 0 0 chr13 45906551 45906574 -55966595 + AT_rich Low_complexity Low_complexity 1 23 0 1799 181 0 7 chr13 45906576 45906879 -55966290 + AluSx SINE Alu 3 303 -9 28 0 0 0 chr13 45906998 45907026 -55966143 + AT_rich Low_complexity Low_complexity 1 28 0 357 330 31 21 chr13 45907107 45907301 -55965868 + MLT1J2 LTR MaLR 4 199 -251 361 301 91 8 chr13 45908251 45908613 -55964556 + L1ME3A LINE L1 4942 5333 -813 4807 106 106 0 chr13 45908637 45909384 -55963785 - LTR12 LTR ERV1 0 826 1 356 355 32 0 chr13 45909388 45909574 -55963595 + L1ME3A LINE L1 5362 5553 -2255 21 0 0 0 chr13 45909662 45909683 -55963486 + AT_rich Low_complexity Low_complexity 1 21 0 254 289 63 40 chr13 45909713 45909966 -55963203 + L1ME3A LINE L1 5688 5946 -224 2480 150 95 4 chr13 45912118 45912571 -55960598 - L1PB4 LINE L1 -1 6155 5662 1184 228 142 88 chr13 45912571 45913479 -55959690 + LTR1B LTR ERV1 1 1020 0 7946 194 32 22 chr13 45913480 45915721 -55957448 - L1PB4 LINE L1 -491 5665 3410 3197 183 45 78 chr13 45915863 45916716 -55956453 - L1MA8 LINE L1 -3 6288 5465 2133 127 0 0 chr13 45917034 45917333 -55955836 - AluY SINE Alu -12 299 1 32 0 0 0 chr13 45918414 45918446 -55954723 + AT_rich Low_complexity Low_complexity 1 32 0 3839 198 40 25 chr13 45918446 45919591 -55953578 + MER52A LTR ERV1 656 1755 0 1593 203 29 51 chr13 45920091 45920622 -55952547 - L1MA9 LINE L1 -173 6127 5653 316 215 91 25 chr13 45920641 45920762 -55952407 - L1MC4 LINE L1 -813 7229 7101 21 0 0 0 chr13 45920870 45920891 -55952278 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 45920941 45920964 -55952205 + AT_rich Low_complexity Low_complexity 1 23 0 217 281 34 82 chr13 45921494 45921640 -55951529 - MIR SINE MIR -69 193 55 210 377 47 19 chr13 45922120 45922226 -55950943 + L2 LINE L2 2941 3049 -223 329 300 161 22 chr13 45923213 45923393 -55949776 + MER63A DNA MER1_type 4 208 -2 23 54 0 0 chr13 45923934 45923971 -55949198 + AT_rich Low_complexity Low_complexity 1 37 0 353 280 70 0 chr13 45925902 45926045 -55947124 - MER103 DNA DNA -12 154 2 225 94 0 0 chr13 45926538 45926570 -55946599 + (TG)n Simple_repeat Simple_repeat 2 33 0 2033 127 3 0 chr13 45927495 45927778 -55945391 - AluSx SINE Alu -26 286 3 4101 108 58 69 chr13 45928208 45929002 -55944167 + LTR1 LTR ERV1 1 785 0 1406 231 67 69 chr13 45929101 45929682 -55943487 + LTR38B LTR ERV1 1 580 -30 1957 125 7 3 chr13 45929733 45930022 -55943147 + AluSq SINE Alu 1 290 -23 229 138 17 17 chr13 45930192 45930250 -55942919 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chr13 45930688 45930716 -55942453 + AT_rich Low_complexity Low_complexity 1 28 0 659 189 7 7 chr13 45930718 45930871 -55942298 - L1MA7 LINE L1 -4 6287 6135 303 71 0 0 chr13 45931154 45931196 -55941973 + (CA)n Simple_repeat Simple_repeat 1 42 0 1850 142 0 7 chr13 45931211 45931500 -55941669 - AluSx SINE Alu -19 293 7 21 0 0 0 chr13 45932537 45932558 -55940611 + AT_rich Low_complexity Low_complexity 1 21 0 302 179 0 15 chr13 45934199 45934266 -55938903 + GA-rich Low_complexity Low_complexity 4 69 0 2291 92 16 0 chr13 45934431 45934734 -55938435 + AluY SINE Alu 4 311 0 757 322 99 38 chr13 45934848 45935852 -55937317 + L1MEc LINE L1 108 1172 -5224 1233 173 26 22 chr13 45936663 45936935 -55936234 + L1MA3 LINE L1 6033 6305 0 1214 279 93 24 chr13 45937100 45937680 -55935489 - L1ME1 LINE L1 -4 6231 5612 1605 256 174 62 chr13 45937704 45938943 -55934226 - L1ME1 LINE L1 -1304 4911 3385 215 31 31 0 chr13 45938943 45938975 -55934194 + (TA)n Simple_repeat Simple_repeat 2 34 0 1605 256 174 62 chr13 45938975 45939637 -55933532 - L1ME1 LINE L1 -2830 3385 2798 180 77 0 0 chr13 45939637 45939663 -55933506 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 495 281 60 87 chr13 45939713 45939866 -55933303 - L1ME1 LINE L1 -4333 2063 1907 2244 101 7 0 chr13 45939866 45940174 -55932995 + AluSp SINE Alu 1 310 -3 2221 104 3 0 chr13 45940174 45940472 -55932697 + AluY SINE Alu 1 299 -12 225 0 0 0 chr13 45940472 45940497 -55932672 + (TA)n Simple_repeat Simple_repeat 2 26 0 495 281 60 87 chr13 45940497 45941107 -55932062 - L1ME1 LINE L1 -4487 1909 1284 2275 94 3 0 chr13 45941107 45941404 -55931765 + AluY SINE Alu 1 298 -13 495 281 60 87 chr13 45941404 45941584 -55931585 - L1ME1 LINE L1 -5112 1284 1101 1716 141 0 7 chr13 45941584 45941854 -55931315 - L1PB4 LINE L1 -3 6153 5886 495 281 60 87 chr13 45941854 45942085 -55931084 - L1ME1 LINE L1 -5295 1101 917 1162 274 29 16 chr13 45942086 45942640 -55930529 - LTR40a LTR ERVL -1 518 14 2103 291 44 30 chr13 45942658 45943530 -55929639 - L1ME1 LINE L1 -5476 920 37 685 111 0 10 chr13 45943573 45943672 -55929497 + MER4A LTR ERV1 1 98 -566 2307 112 7 84 chr13 45943672 45943904 -55929265 + MER4A LTR ERV1 261 445 -219 2202 156 8 16 chr13 45943904 45944282 -55928887 - THE1C LTR MaLR 0 375 1 2307 112 7 84 chr13 45944282 45944487 -55928682 + MER4A LTR ERV1 445 664 0 6851 152 115 41 chr13 45944490 45944725 -55928444 + MER4A-int LTR ERV1 1 217 -6381 1887 151 103 26 chr13 45944725 45945143 -55928026 + LTR7 LTR ERV1 1 450 0 6851 152 115 41 chr13 45945143 45945901 -55927268 + MER4A-int LTR ERV1 217 917 -5681 387 0 0 0 chr13 45945901 45945944 -55927225 + (TG)n Simple_repeat Simple_repeat 2 44 0 6851 152 115 41 chr13 45945944 45947654 -55925515 + MER4A-int LTR ERV1 917 2499 -4099 2061 121 0 3 chr13 45947654 45947943 -55925226 - AluY SINE Alu -23 288 1 261 0 0 0 chr13 45947943 45947972 -55925197 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1876 163 3 0 chr13 45947972 45948255 -55924914 - AluSx SINE Alu -28 284 1 6851 152 115 41 chr13 45948255 45948360 -55924809 + MER4A-int LTR ERV1 2386 2482 -4116 1430 159 34 37 chr13 45948342 45948418 -55924751 + MER4A-int LTR ERV1 3305 3380 -3218 * 189 0 0 0 chr13 45948418 45948439 -55924730 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1430 159 34 37 chr13 45948439 45948740 -55924429 + MER4A-int LTR ERV1 3380 3681 -2917 * 5709 156 54 21 chr13 45948739 45950437 -55922732 + MER4A-int LTR ERV1 3837 5506 -757 482 151 44 138 chr13 45950437 45950613 -55922556 + LTR28 LTR ERV1 1 138 -287 282 211 14 0 chr13 45950624 45950695 -55922474 + LTR1 LTR ERV1 119 190 -595 * 2333 220 102 20 chr13 45950664 45951259 -55921910 + LTR28 LTR ERV1 308 951 -69 236 250 0 17 chr13 45951317 45951377 -55921792 + LTR28 LTR ERV1 956 1014 -6 4385 131 30 37 chr13 45951381 45952243 -55920926 + MER4A-int LTR ERV1 5706 6561 -37 441 177 31 10 chr13 45952329 45952425 -55920744 + MER4A LTR ERV1 1 98 -566 2302 142 15 27 chr13 45952425 45952834 -55920335 + MER4A LTR ERV1 261 664 0 1518 168 8 4 chr13 45953460 45953704 -55919465 + AluSx SINE Alu 1 245 -67 2219 187 5 7 chr13 45955678 45956095 -55917074 + MSTB1 LTR MaLR 1 416 -16 694 173 65 93 chr13 45956240 45956454 -55916715 - MER20 DNA MER1_type -4 215 8 2096 93 0 53 chr13 45957126 45957446 -55915723 - AluSq SINE Alu 0 304 1 4569 180 26 19 chr13 45957616 45957816 -55915353 - L1MA4 LINE L1 -8 6292 6095 2126 180 65 0 chr13 45957816 45958216 -55914953 - MSTB LTR MaLR 0 426 1 7856 206 10 19 chr13 45958216 45959882 -55913287 - MSTB-int LTR MaLR 0 1651 1 2129 198 44 2 chr13 45959882 45960291 -55912878 - MSTB LTR MaLR 0 426 1 4569 180 26 19 chr13 45960291 45961256 -55911913 - L1MA4 LINE L1 -204 6096 5118 730 156 13 45 chr13 45961259 45961413 -55911756 - MSTB LTR MaLR -2 373 225 230 186 0 0 chr13 45961934 45961977 -55911192 + LTR30 LTR ERV1 1 43 -679 675 189 142 21 chr13 45961977 45962237 -55910932 + LTR12 LTR ERV1 48 285 -429 257 267 11 0 chr13 45962238 45962328 -55910841 + LTR30 LTR ERV1 553 643 -79 636 135 0 0 chr13 45962329 45962433 -55910736 + LTR12 LTR ERV1 481 584 -130 5477 137 12 14 chr13 45962449 45963389 -55909780 + HERV9 LTR ERV1 54 991 -7408 4803 112 31 14 chr13 45963396 45964171 -55908998 + HERV9 LTR ERV1 1164 1951 -6448 6908 84 142 1 chr13 45964171 45965243 -55907926 + MER11B LTR ERVK 1 1223 -13 20567 171 2 13 chr13 45965257 45966596 -55906573 + HERV9 LTR ERV1 2028 3381 -4876 2291 102 0 34 chr13 45966596 45966918 -55906251 + AluY SINE Alu 1 311 0 20567 171 2 13 chr13 45966918 45969123 -55904046 + HERV9 LTR ERV1 3381 5531 -2726 10422 113 2 10 chr13 45969121 45970744 -55902425 + HERV9 LTR ERV1 6789 8399 0 * 233 211 0 0 chr13 45970744 45970796 -55902373 + LTR30 LTR ERV1 1 52 -670 646 157 122 109 chr13 45970796 45971026 -55902143 + LTR12 LTR ERV1 53 285 -429 355 174 0 0 chr13 45971026 45971095 -55902074 + LTR30 LTR ERV1 552 620 -102 636 203 24 0 chr13 45971095 45971218 -55901951 + LTR12 LTR ERV1 355 480 -234 705 262 80 77 chr13 45972571 45972934 -55900235 + MER31-int LTR ERV1 3543 3906 -1030 320 231 0 13 chr13 45972984 45973062 -55900107 + MER31-int LTR ERV1 4131 4207 -729 1262 231 45 5 chr13 45973081 45973458 -55899711 + L1MA9 LINE L1 5888 6279 -33 2341 74 24 0 chr13 45973842 45974138 -55899031 - AluY SINE Alu -8 303 1 222 160 0 0 chr13 45974973 45975023 -55898146 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 1514 281 104 19 chr13 45975891 45976429 -55896740 - MLT1E LTR MaLR -9 584 1 392 308 69 8 chr13 45976473 45976733 -55896436 + L1MEc LINE L1 1458 1733 -4663 742 293 37 62 chr13 45976736 45976909 -55896260 - MLT1F1 LTR MaLR 0 567 391 2048 109 0 3 chr13 45976909 45977236 -55895933 - AluY SINE Alu 0 326 1 742 293 37 62 chr13 45977236 45977567 -55895602 - MLT1F1 LTR MaLR -176 391 61 347 282 50 109 chr13 45977607 45978029 -55895140 - MLT1F1-int LTR MaLR 0 1371 975 2210 108 0 3 chr13 45978033 45978320 -55894849 + AluSg SINE Alu 13 298 -12 1895 156 3 29 chr13 45978607 45978921 -55894248 + AluSx SINE Alu 1 306 -6 301 329 60 18 chr13 45979209 45979492 -55893677 - MLT1F1-int LTR MaLR -760 611 317 * 3321 155 37 15 chr13 45979491 45980179 -55892990 - L1MA4 LINE L1 -27 6273 5390 2213 97 0 16 chr13 45980179 45980488 -55892681 - AluSq SINE Alu -9 304 1 3321 155 37 15 chr13 45980488 45980578 -55892591 - L1MA4 LINE L1 -910 5390 5303 6496 193 74 61 chr13 45980588 45982314 -55890855 + MER52A LTR ERV1 1 1748 -7 1730 208 0 0 chr13 45982321 45982705 -55890464 - L1MA4 LINE L1 -849 5297 4914 * 2501 162 8 6 chr13 45982700 45983201 -55889968 + L1 LINE L1 4467 4968 -1178 288 276 53 59 chr13 45983327 45983479 -55889690 - MLT1F1 LTR MaLR -2 565 415 398 266 51 0 chr13 45983557 45983715 -55889454 + L1MEc LINE L1 1730 1895 -4501 441 278 57 23 chr13 45983821 45984170 -55888999 + L1MEc LINE L1 1904 2264 -4132 4068 153 14 37 chr13 45984221 45984286 -55888883 + L1PA16 LINE L1 5152 5217 -949 1972 143 3 16 chr13 45984286 45984594 -55888575 + AluSx SINE Alu 2 305 -7 4068 153 14 37 chr13 45984594 45985237 -55887932 + L1PA16 LINE L1 5217 5824 -342 2351 71 3 3 chr13 45985237 45985533 -55887636 + AluY SINE Alu 1 296 -15 4068 153 14 37 chr13 45985533 45985765 -55887404 + L1PA16 LINE L1 5824 6060 -106 23 54 0 0 chr13 45985807 45985844 -55887325 + AT_rich Low_complexity Low_complexity 1 37 0 563 270 14 0 chr13 45985860 45986075 -55887094 + L1M4 LINE L1 4501 4718 -1428 299 275 53 23 chr13 45987061 45987192 -55885977 + LTR33 LTR ERVL 40 174 -347 622 213 55 0 chr13 45987573 45987700 -55885469 + AluJo SINE Alu 1 134 -178 271 290 32 0 chr13 45987737 45987830 -55885339 - MIR SINE MIR 0 262 167 216 128 21 21 chr13 45988668 45988715 -55884454 + CT-rich Low_complexity Low_complexity 2 48 0 243 0 0 0 chr13 45988761 45988788 -55884381 + (TG)n Simple_repeat Simple_repeat 1 27 0 379 208 100 8 chr13 45988799 45988929 -55884240 - L1MC4 LINE L1 -144 7898 7757 264 237 129 29 chr13 45988933 45989072 -55884097 - MER67D LTR ERV1 -3 511 359 * 1117 232 49 35 chr13 45989066 45989282 -55883887 - MER67C LTR ERV1 -301 409 185 12592 151 15 21 chr13 45989282 45991864 -55881305 + L1PA10 LINE L1 3024 5616 -552 2015 131 47 36 chr13 45991864 45992224 -55880945 + THE1B LTR MaLR 1 364 0 12592 151 15 21 chr13 45992224 45992771 -55880398 + L1PA10 LINE L1 5616 6164 -4 1117 232 49 35 chr13 45992771 45992899 -55880270 - MER67C LTR ERV1 -525 185 60 299 188 72 0 chr13 45992934 45993003 -55880166 - MER67D LTR ERV1 -428 86 13 356 231 90 32 chr13 45993078 45993234 -55879935 - L1MC4 LINE L1 -341 7701 7537 215 350 98 42 chr13 45993292 45993435 -55879734 - MIR SINE MIR -101 161 11 1106 187 20 0 chr13 45993658 45993861 -55879308 + L1PA16 LINE L1 5949 6155 -11 1675 233 78 4 chr13 45994674 45995193 -55877976 + L1MA9 LINE L1 4812 5369 -777 965 94 0 0 chr13 45995193 45995320 -55877849 + AluSq/x SINE Alu 1 127 -186 3404 224 63 21 chr13 45995321 45996203 -55876966 + L1MA9 LINE L1 5382 6300 -12 782 251 80 0 chr13 45996201 45996440 -55876729 + L1MEc LINE L1 640 897 -5499 * 1710 215 52 31 chr13 45997470 45997945 -55875224 + L1MA9 LINE L1 5719 6196 -116 23 0 0 0 chr13 45997968 45997991 -55875178 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 45998030 45998056 -55875113 + AT_rich Low_complexity Low_complexity 1 26 0 2183 104 3 0 chr13 46000429 46000726 -55872443 + AluSq SINE Alu 5 302 -11 386 376 41 6 chr13 46000811 46000981 -55872188 - L2 LINE L2 -250 3063 2888 6362 227 39 17 chr13 46001197 46002929 -55870240 + L1 LINE L1 2401 4169 -1977 8502 189 52 52 chr13 46003032 46005581 -55867588 + L1MA7 LINE L1 3197 5750 -541 206 62 31 0 chr13 46005581 46005613 -55867556 + (CA)n Simple_repeat Simple_repeat 2 34 0 8502 189 52 52 chr13 46005613 46006147 -55867022 + L1MA7 LINE L1 5750 6282 -9 2432 150 19 5 chr13 46006528 46006947 -55866222 - L1MA4A LINE L1 -5 6298 5874 734 314 197 17 chr13 46007403 46007559 -55865610 - L2 LINE L2 -338 2976 2849 1990 70 19 70 chr13 46007559 46007871 -55865298 + AluY SINE Alu 1 296 -15 734 314 197 17 chr13 46007871 46007926 -55865243 - L2 LINE L2 -465 2849 2805 1432 202 57 0 chr13 46007926 46008208 -55864961 + AluJb SINE Alu 1 298 -14 734 314 197 17 chr13 46008208 46008523 -55864646 - L2 LINE L2 -509 2805 2354 542 302 221 30 chr13 46008752 46009394 -55863775 - L1MEd LINE L1 -3250 2879 2115 252 225 38 12 chr13 46009397 46009477 -55863692 + T-rich Low_complexity Low_complexity 3 84 0 348 321 117 19 chr13 46010287 46010611 -55862558 - L1MEd LINE L1 -4862 1257 902 1160 185 19 101 chr13 46011383 46011761 -55861408 - MLT1A1 LTR MaLR 0 365 19 1801 101 16 75 chr13 46011830 46012138 -55861031 + AluSg SINE Alu 1 290 -20 22 0 0 0 chr13 46012702 46012724 -55860445 + AT_rich Low_complexity Low_complexity 1 22 0 2140 85 3 29 chr13 46012878 46013185 -55859984 - AluSx SINE Alu -13 299 1 916 236 15 0 chr13 46013293 46013492 -55859677 - MER2 DNA MER2_type -135 210 9 2225 91 3 3 chr13 46013632 46013929 -55859240 - AluSx SINE Alu -15 297 1 487 359 15 10 chr13 46014082 46014288 -55858881 + L2 LINE L2 2469 2675 -639 2139 106 3 7 chr13 46014358 46014660 -55858509 + AluSx SINE Alu 1 301 -11 1039 143 6 12 chr13 46014662 46014830 -55858339 + AluSg/x SINE Alu 137 303 -9 347 305 32 39 chr13 46014830 46014984 -55858185 + L2 LINE L2 2706 2858 -456 359 338 47 47 chr13 46015066 46015344 -55857825 + L2 LINE L2 2952 3229 -84 23 33 0 0 chr13 46015720 46015750 -55857419 + AT_rich Low_complexity Low_complexity 1 30 0 202 291 87 10 chr13 46016509 46016612 -55856557 - MIR3 SINE MIR -2 206 96 237 65 0 0 chr13 46017091 46017122 -55856047 + (TG)n Simple_repeat Simple_repeat 1 31 0 27 29 0 0 chr13 46017537 46017571 -55855598 + AT_rich Low_complexity Low_complexity 1 34 0 2091 179 124 0 chr13 46018998 46019440 -55853729 - LOR1a LTR ERV1 0 497 1 452 305 46 13 chr13 46019877 46020028 -55853141 - MER110-int LTR ERV1 -742 3905 3750 183 156 0 0 chr13 46020901 46020933 -55852236 + (TAA)n Simple_repeat Simple_repeat 2 33 0 480 35 0 0 chr13 46021202 46021260 -55851909 + (TA)n Simple_repeat Simple_repeat 2 59 0 2958 148 22 4 chr13 46021356 46021844 -55851325 + LOR1a LTR ERV1 1 497 0 331 356 68 6 chr13 46022126 46022289 -55850880 - MER90 LTR ERV1 -23 552 380 292 129 113 0 chr13 46022308 46022370 -55850799 + MADE1 DNA Mariner 12 80 0 323 250 45 18 chr13 46022739 46022851 -55850318 + Tigger5 DNA MER2_type 2209 2323 0 25 0 0 0 chr13 46024316 46024341 -55848828 + AT_rich Low_complexity Low_complexity 1 25 0 1798 109 15 4 chr13 46025418 46025683 -55847486 - AluSp SINE Alu -15 298 31 2909 152 195 9 chr13 46025683 46026263 -55846906 - LTR12 LTR ERV1 0 688 1 419 111 0 14 chr13 46026665 46026737 -55846432 + (TTCCC)n Simple_repeat Simple_repeat 5 75 0 1530 161 0 0 chr13 46026739 46026975 -55846194 - AluSx SINE Alu -38 274 39 1711 223 62 14 chr13 46028177 46028613 -55844556 - MER65C LTR ERV1 -4 457 1 23 0 0 0 chr13 46028640 46028663 -55844506 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr13 46028825 46028864 -55844305 + AT_rich Low_complexity Low_complexity 1 39 0 45 34 0 0 chr13 46028900 46028959 -55844210 + AT_rich Low_complexity Low_complexity 1 59 0 6937 52 6 0 chr13 46030077 46031005 -55842164 - L1PA7 LINE L1 -3 6151 5228 869 88 0 32 chr13 46031005 46031119 -55842050 - AluSg/x SINE Alu -17 295 184 189 211 0 5 chr13 46031201 46031245 -55841924 - MIR SINE MIR -65 143 101 1773 158 3 0 chr13 46032065 46032349 -55840820 - AluJb SINE Alu -27 285 1 1916 108 11 3 chr13 46034744 46035031 -55838138 + AluSx SINE Alu 1 289 -23 192 77 0 0 chr13 46035886 46035912 -55837257 + (CA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr13 46036603 46036626 -55836543 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr13 46037032 46037059 -55836110 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2055 123 7 13 chr13 46037536 46037837 -55835332 - AluSx SINE Alu -13 299 1 207 366 130 0 chr13 46039148 46039271 -55833898 + MIR SINE MIR 53 191 -71 228 56 139 0 chr13 46039497 46039533 -55833636 - MER53 DNA DNA 0 189 149 535 147 102 62 chr13 46039548 46039725 -55833444 - MER53 DNA DNA -3 186 3 2555 55 0 0 chr13 46040445 46040752 -55832417 + AluY SINE Alu 2 308 -3 22 70 0 0 chr13 46040970 46041013 -55832156 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 46042876 46042898 -55830271 + AT_rich Low_complexity Low_complexity 1 22 0 1451 138 4 9 chr13 46043340 46043571 -55829598 - AluJb SINE Alu -1 311 82 2345 93 0 0 chr13 46043579 46043890 -55829279 - AluY SINE Alu 0 311 1 610 155 0 0 chr13 46043890 46043987 -55829182 - AluJb SINE Alu -215 97 1 1574 251 55 51 chr13 46044107 46044638 -55828531 + MLT1E LTR MaLR 59 591 -2 21 0 0 0 chr13 46045099 46045120 -55828049 + AT_rich Low_complexity Low_complexity 1 21 0 582 211 64 0 chr13 46045134 46045290 -55827879 - L1MA8 LINE L1 -14 6277 6112 22 56 0 0 chr13 46045290 46045326 -55827843 + AT_rich Low_complexity Low_complexity 1 36 0 236 122 24 0 chr13 46045333 46045374 -55827795 + L1MA8 LINE L1 6056 6097 -194 21 57 0 0 chr13 46045574 46045609 -55827560 + AT_rich Low_complexity Low_complexity 1 35 0 288 0 0 0 chr13 46045760 46045792 -55827377 + (CA)n Simple_repeat Simple_repeat 2 33 0 211 254 42 28 chr13 46045968 46046039 -55827130 - MIR SINE MIR -32 230 159 204 214 0 0 chr13 46047472 46047514 -55825655 + (CA)n Simple_repeat Simple_repeat 2 43 0 279 0 0 0 chr13 46047787 46047818 -55825351 + (TC)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr13 46047817 46047839 -55825330 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 433 342 54 23 chr13 46048496 46048756 -55824413 + MLT1J2 LTR MaLR 38 305 -145 668 285 93 63 chr13 46048820 46049263 -55823906 - MLT1G1 LTR MaLR -43 506 15 260 223 88 101 chr13 46049296 46049444 -55823725 - MLT1G1-int LTR MaLR -21 1714 1569 390 121 0 0 chr13 46049665 46049731 -55823438 + (TG)n Simple_repeat Simple_repeat 1 66 0 858 306 38 36 chr13 46049848 46050240 -55822929 - L2 LINE L2 -657 2657 2265 437 385 11 0 chr13 46050240 46050427 -55822742 - L2 LINE L2 -1342 1972 1784 2051 119 3 3 chr13 46051011 46051304 -55821865 - AluSx SINE Alu -19 293 1 686 188 0 8 chr13 46051648 46051781 -55821388 - FLAM_C SINE Alu -11 132 1 1561 222 3 0 chr13 46052900 46053188 -55819981 - AluJo SINE Alu -23 289 1 180 163 0 0 chr13 46053404 46053447 -55819722 + (ATCG)n Simple_repeat Simple_repeat 2 44 0 590 219 16 0 chr13 46054259 46054382 -55818787 + FLAM_A SINE Alu 1 125 -8 25 0 0 0 chr13 46055135 46055160 -55818009 + AT_rich Low_complexity Low_complexity 1 25 0 6631 158 32 10 chr13 46055165 46055778 -55817391 - Tigger3b DNA MER2_type -1802 1226 628 2161 126 7 0 chr13 46055778 46056087 -55817082 - AluSq SINE Alu -2 311 1 6631 158 32 10 chr13 46056087 46056672 -55816497 - Tigger3b DNA MER2_type -2400 628 2 681 187 35 122 chr13 46056673 46056903 -55816266 + L1MC1 LINE L1 5623 5832 -501 23 0 0 0 chr13 46057211 46057234 -55815935 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 46057340 46057361 -55815808 + AT_rich Low_complexity Low_complexity 1 21 0 1709 215 26 5 chr13 46057682 46058064 -55815105 - MLT1B LTR MaLR 0 390 1 510 46 0 0 chr13 46058184 46058249 -55814920 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 433 250 51 45 chr13 46058404 46058580 -55814589 - MER5B DNA MER1_type -1 177 1 2196 102 0 0 chr13 46058966 46059259 -55813910 + AluSg SINE Alu 1 293 -17 4322 78 16 12 chr13 46060917 46061214 -55811955 - L1P3 LINE L1 -377 5777 5483 2262 102 3 0 chr13 46061214 46061517 -55811652 - AluY SINE Alu -7 304 1 4322 78 16 12 chr13 46061517 46062243 -55810926 - L1P3 LINE L1 -671 5483 4756 2607 76 6 3 chr13 46062244 46062600 -55810569 + L1PA7 LINE L1 5791 6147 -7 21 71 0 0 chr13 46062600 46062642 -55810527 + AT_rich Low_complexity Low_complexity 1 42 0 2008 175 140 15 chr13 46063545 46063945 -55809224 - MER50 LTR ERV1 -23 711 262 1348 137 4 63 chr13 46063941 46064211 -55808958 + LTR1 LTR ERV1 532 785 0 * 261 347 0 0 chr13 46064502 46064577 -55808592 + HERVL LTR ERVL 1742 1816 -3838 1456 248 101 3 chr13 46064650 46065025 -55808144 + MER74C LTR ERVL 47 458 -2 362 343 54 29 chr13 46065025 46065264 -55807905 + HERVL LTR ERVL 1876 2120 -3644 5409 133 21 20 chr13 46065302 46065692 -55807477 - L1PA16 LINE L1 0 6166 5778 2304 88 0 0 chr13 46065692 46065987 -55807182 - AluY SINE Alu -16 295 1 5409 133 21 20 chr13 46065987 46066508 -55806661 - L1PA16 LINE L1 -388 5778 5254 1544 191 151 8 chr13 46068787 46069206 -55803963 - MER31A LTR ERV1 -5 656 1 203 127 36 73 chr13 46070531 46070586 -55802583 + T-rich Low_complexity Low_complexity 3 55 0 12509 214 45 21 chr13 46071895 46076682 -55796487 + L1MA4 LINE L1 2178 6844 -875 2187 99 0 0 chr13 46076682 46077012 -55796157 + AluSx SINE Alu 6 335 0 12509 214 45 21 chr13 46077012 46077313 -55795856 + L1MA4 LINE L1 6844 7136 -583 348 24 0 0 chr13 46077313 46077354 -55795815 + (CA)n Simple_repeat Simple_repeat 2 42 0 12509 214 45 21 chr13 46077354 46077849 -55795320 + L1MA4 LINE L1 7136 7715 -4 23 0 0 0 chr13 46078216 46078239 -55794930 + AT_rich Low_complexity Low_complexity 1 23 0 1902 147 85 15 chr13 46079429 46079769 -55793400 + THE1B LTR MaLR 1 364 0 1235 297 56 5 chr13 46079786 46080194 -55792975 + LTR53 LTR ERVL 39 467 -52 560 163 57 0 chr13 46080215 46080338 -55792831 + L1MA8 LINE L1 6162 6291 0 1908 197 22 0 chr13 46080507 46080863 -55792306 + MLT1A1 LTR MaLR 2 365 0 727 286 157 47 chr13 46081171 46082405 -55790764 - L1MC4 LINE L1 -599 7209 5930 2754 231 27 39 chr13 46083158 46084698 -55788471 - L1MD2 LINE L1 -396 6357 4838 1548 146 154 109 chr13 46084698 46084753 -55788416 - MER4A LTR ERV1 -2 662 611 2358 83 0 0 chr13 46084753 46085055 -55788114 + AluY SINE Alu 3 304 -7 1548 146 154 109 chr13 46085055 46085383 -55787786 - MER4A LTR ERV1 -53 611 262 529 133 20 20 chr13 46085384 46085482 -55787687 - MER4A LTR ERV1 -566 98 1 1687 271 95 30 chr13 46085483 46086030 -55787139 - L1MD2 LINE L1 -1699 4841 4226 2211 107 0 7 chr13 46086030 46086329 -55786840 - AluSx SINE Alu -15 297 1 1687 271 95 30 chr13 46086329 46086561 -55786608 - L1MD2 LINE L1 -2314 4226 4011 1616 158 37 87 chr13 46086569 46086950 -55786219 - MER4E LTR ERV1 0 779 418 1395 130 69 0 chr13 46086950 46087166 -55786003 - LTR12 LTR ERV1 -4 710 480 315 242 30 20 chr13 46087166 46087265 -55785904 - LTR30 LTR ERV1 -79 643 544 1859 72 0 129 chr13 46087265 46087583 -55785586 - LTR12 LTR ERV1 -437 277 1 2855 133 77 14 chr13 46087583 46088078 -55785091 - MER4D LTR ERV1 -377 526 1 674 282 37 30 chr13 46088082 46088201 -55784968 - L1MD2 LINE L1 -2540 4000 3883 706 194 8 0 chr13 46088201 46088330 -55784839 - FLAM_A SINE Alu -3 130 1 674 282 37 30 chr13 46088330 46088675 -55784494 - L1MD2 LINE L1 -2657 3883 3533 1829 119 164 75 chr13 46088675 46089046 -55784123 - MER4A LTR ERV1 0 664 261 553 155 10 10 chr13 46089047 46089144 -55784025 - MER4A LTR ERV1 -567 97 1 248 211 48 87 chr13 46089144 46089248 -55783921 - L1MD2 LINE L1 -3004 3536 3437 525 221 24 31 chr13 46089254 46089381 -55783788 - FRAM SINE Alu -15 161 36 599 283 60 22 chr13 46089387 46089705 -55783464 - L1MD2 LINE L1 -3114 3426 3097 1473 218 53 35 chr13 46089739 46090133 -55783036 - MLT1C LTR MaLR -29 438 38 1357 230 23 81 chr13 46090208 46090954 -55782215 - L1MD2 LINE L1 -3468 3072 2379 1675 211 34 3 chr13 46090954 46091281 -55781888 - MER2 DNA MER2_type 0 345 9 726 218 218 19 chr13 46091287 46091594 -55781575 - L1MD2 LINE L1 -4159 2381 2014 21 57 0 0 chr13 46092290 46092325 -55780844 + AT_rich Low_complexity Low_complexity 1 35 0 1838 151 0 22 chr13 46092512 46092824 -55780345 + AluSq SINE Alu 1 305 -8 38 61 0 0 chr13 46093001 46093067 -55780102 + AT_rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr13 46093359 46093380 -55779789 + AT_rich Low_complexity Low_complexity 1 21 0 477 331 25 45 chr13 46093763 46094008 -55779161 + MIR SINE MIR 9 248 -14 185 345 80 0 chr13 46094069 46094182 -55778987 + L2 LINE L2 3190 3311 -2 321 321 75 13 chr13 46094757 46094916 -55778253 - MIR SINE MIR -92 170 2 23 0 0 0 chr13 46095361 46095384 -55777785 + AT_rich Low_complexity Low_complexity 1 23 0 2200 183 34 10 chr13 46095435 46095818 -55777351 - MSTB LTR MaLR 0 426 31 1176 74 69 0 chr13 46095818 46095993 -55777176 + L1PA6 LINE L1 5968 6154 0 2200 183 34 10 chr13 46095993 46096018 -55777151 - MSTB LTR MaLR -395 31 8 7537 203 44 14 chr13 46096025 46097628 -55775541 - MSTB-int LTR MaLR 0 1651 1 1991 201 35 10 chr13 46097628 46098022 -55775147 - MSTB LTR MaLR 0 426 23 2252 115 0 0 chr13 46098399 46098711 -55774458 - AluSq SINE Alu -1 312 1 354 180 0 0 chr13 46099089 46099150 -55774019 - Tigger1 DNA MER2_type -17 2401 2341 591 10 62 0 chr13 46099585 46099681 -55773488 + (TA)n Simple_repeat Simple_repeat 2 103 0 352 267 0 0 chr13 46100267 46100353 -55772816 + MER34 LTR ERV1 1 86 -456 593 237 59 30 chr13 46100408 46100577 -55772592 + LTR48B LTR ERV1 471 644 0 186 103 0 0 chr13 46101815 46101844 -55771325 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 25 0 0 0 chr13 46101884 46101909 -55771260 + AT_rich Low_complexity Low_complexity 1 25 0 3587 210 85 10 chr13 46102912 46103558 -55769611 + L1PA16 LINE L1 4454 5050 -1116 351 0 0 0 chr13 46103558 46103597 -55769572 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3587 210 85 10 chr13 46103597 46103808 -55769361 + L1PA16 LINE L1 5050 5244 -922 1990 140 69 29 chr13 46103808 46104158 -55769011 + THE1B LTR MaLR 1 364 0 3587 210 85 10 chr13 46104158 46104251 -55768918 + L1PA16 LINE L1 5244 5456 -710 2634 143 0 7 chr13 46104316 46104741 -55768428 + L1PA16 LINE L1 5426 5847 -319 235 340 40 79 chr13 46106165 46106494 -55766675 + L2 LINE L2 1480 1795 -1519 207 0 0 0 chr13 46106509 46106532 -55766637 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2655 55 3 6 chr13 46106536 46106883 -55766286 - L1PA4 LINE L1 -1 6154 5809 21 0 0 0 chr13 46107059 46107080 -55766089 + AT_rich Low_complexity Low_complexity 1 21 0 633 236 0 0 chr13 46107080 46107203 -55765966 - FLAM_A SINE Alu -10 123 1 242 341 115 37 chr13 46107210 46107480 -55765689 + L2 LINE L2 3005 3295 -18 225 244 0 0 chr13 46109611 46109656 -55763513 + (TGG)n Simple_repeat Simple_repeat 3 47 0 186 331 49 28 chr13 46109659 46109801 -55763368 - MIR SINE MIR -34 228 84 26 0 0 0 chr13 46110300 46110326 -55762843 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr13 46111402 46111426 -55761743 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 46113891 46113921 -55759248 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 46114745 46114775 -55758394 + AT_rich Low_complexity Low_complexity 1 30 0 201 128 51 0 chr13 46114983 46115022 -55758147 + (CAAAT)n Simple_repeat Simple_repeat 5 45 0 339 294 22 11 chr13 46115379 46115471 -55757698 + MER5A DNA MER1_type 95 187 -2 1008 144 18 6 chr13 46115501 46115668 -55757501 + AluJb SINE Alu 6 174 -138 6776 175 6 11 chr13 46115668 46116931 -55756238 - L1P LINE L1 -1343 4803 3547 1007 255 33 36 chr13 46117693 46118026 -55755143 - MER93a LTR ERV1 -4 398 67 750 355 93 28 chr13 46118120 46118826 -55754343 + L2 LINE L2 819 1570 -1744 646 170 18 0 chr13 46118890 46119002 -55754167 + FRAM SINE Alu 60 173 -3 310 388 129 24 chr13 46119040 46119743 -55753426 + L2 LINE L2 2102 2878 -436 1403 259 57 39 chr13 46119773 46120283 -55752886 + LTR40a LTR ERVL 1 519 0 262 235 61 53 chr13 46120331 46120463 -55752706 + Charlie8 DNA MER1_type 82 214 -2203 640 227 7 7 chr13 46120603 46120753 -55752416 + Charlie8 DNA MER1_type 384 533 -1884 586 341 71 26 chr13 46120865 46121205 -55751964 + L2 LINE L2 2866 3220 -93 22 35 0 0 chr13 46121628 46121657 -55751512 + AT_rich Low_complexity Low_complexity 1 29 0 2150 89 0 7 chr13 46121710 46122025 -55751144 - AluSg SINE Alu 0 313 1 22 70 0 0 chr13 46122541 46122584 -55750585 + AT_rich Low_complexity Low_complexity 1 43 0 523 339 81 39 chr13 46122749 46123156 -55750013 - LTR16A LTR ERVL -11 439 16 2014 117 33 3 chr13 46124088 46124387 -55748782 + AluSx SINE Alu 1 308 -4 192 40 0 0 chr13 46124709 46124734 -55748435 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 238 220 0 0 chr13 46124750 46124800 -55748369 + A-rich Low_complexity Low_complexity 1 50 0 1632 173 71 37 chr13 46125927 46126214 -55746955 + MLT1A1 LTR MaLR 1 304 -61 2307 103 0 3 chr13 46126214 46126524 -55746645 + AluSx SINE Alu 1 309 -3 1632 173 71 37 chr13 46126524 46126589 -55746580 + MLT1A1 LTR MaLR 304 365 0 21 36 0 0 chr13 46126649 46126677 -55746492 + AT_rich Low_complexity Low_complexity 1 28 0 702 312 39 13 chr13 46126709 46126943 -55746226 + MIR SINE MIR 13 252 -10 249 227 82 36 chr13 46127529 46127639 -55745530 + MLT1J LTR MaLR 237 351 -160 2011 156 57 52 chr13 46127675 46127896 -55745273 - MSTA LTR MaLR -21 407 182 2285 122 0 0 chr13 46127896 46128207 -55744962 - AluSx SINE Alu -1 311 1 2011 156 57 52 chr13 46128207 46128390 -55744779 - MSTA LTR MaLR -246 182 1 2207 120 0 0 chr13 46129224 46129523 -55743646 + AluSq SINE Alu 1 299 -14 249 238 12 50 chr13 46129721 46129801 -55743368 - MER69 DNA AcHobo 0 2526 2450 1161 111 11 28 chr13 46129984 46130164 -55743005 - AluSp SINE Alu -14 299 123 189 74 0 0 chr13 46130183 46130210 -55742959 + (CA)n Simple_repeat Simple_repeat 2 28 0 2068 115 0 40 chr13 46130210 46130521 -55742648 - AluSx SINE Alu -10 302 3 28 0 0 0 chr13 46132410 46132438 -55740731 + AT_rich Low_complexity Low_complexity 1 28 0 542 236 110 16 chr13 46134826 46134994 -55738175 + MER5A DNA MER1_type 4 189 0 219 300 43 0 chr13 46136125 46136195 -55736974 - MIR SINE MIR -78 130 58 2129 144 44 3 chr13 46137215 46137575 -55735594 - THE1C LTR MaLR 0 375 1 30 45 0 0 chr13 46137584 46137628 -55735541 + AT_rich Low_complexity Low_complexity 1 44 0 83 36 0 0 chr13 46137823 46137934 -55735235 + AT_rich Low_complexity Low_complexity 1 111 0 22 0 0 0 chr13 46138458 46138480 -55734689 + AT_rich Low_complexity Low_complexity 1 22 0 957 131 106 40 chr13 46138620 46138819 -55734350 - L1PA15 LINE L1 -13 6152 5941 21 0 0 0 chr13 46139324 46139345 -55733824 + AT_rich Low_complexity Low_complexity 1 21 0 1833 149 7 0 chr13 46139363 46139674 -55733495 - AluSx SINE Alu 0 313 1 673 244 82 79 chr13 46140003 46140343 -55732826 + L1MC5 LINE L1 6620 6960 -1001 2606 108 5 0 chr13 46140365 46140762 -55732407 + L1PA13 LINE L1 5765 6163 0 229 152 45 15 chr13 46141436 46141502 -55731667 + (TTAA)n Simple_repeat Simple_repeat 1 68 0 527 253 93 43 chr13 46141638 46141939 -55731230 + L1MC5 LINE L1 7260 7575 -386 749 176 15 0 chr13 46142018 46142149 -55731020 + AluSg/x SINE Alu 169 301 -8 234 285 85 0 chr13 46142204 46142369 -55730800 + L1MC5 LINE L1 7605 7783 -178 241 176 81 54 chr13 46142492 46142566 -55730603 + L1MC4 LINE L1 7926 8001 -41 231 114 0 0 chr13 46142684 46142728 -55730441 + (TTTTG)n Simple_repeat Simple_repeat 3 46 0 2110 68 0 0 chr13 46142730 46143008 -55730161 - AluY SINE Alu -33 278 1 26 0 0 0 chr13 46143107 46143133 -55730036 + AT_rich Low_complexity Low_complexity 1 26 0 1401 167 55 82 chr13 46143139 46143285 -55729884 - L1MD1 LINE L1 -43 6199 6051 1624 103 4 26 chr13 46143285 46143558 -55729611 - L1MA1 LINE L1 0 6302 6036 1401 167 55 82 chr13 46143558 46143776 -55729393 - L1MD1 LINE L1 -191 6051 5845 * 1732 203 81 70 chr13 46143775 46144419 -55728750 - L1MDa LINE L1 -4659 1881 1231 181 146 0 36 chr13 46144428 46144483 -55728686 + (TTTTTA)n Simple_repeat Simple_repeat 3 55 0 689 212 55 85 chr13 46144488 46144597 -55728572 + LTR52 LTR ERVL 1 112 -309 186 43 0 0 chr13 46144597 46144620 -55728549 + (TTTAA)n Simple_repeat Simple_repeat 5 27 0 689 212 55 85 chr13 46144620 46144746 -55728423 + LTR52 LTR ERVL 112 229 -192 507 271 53 7 chr13 46144788 46145044 -55728125 - MER89 LTR ERV1 -191 368 1 303 321 50 46 chr13 46145059 46145163 -55728006 + HAL1b LINE L1 569 671 -677 2596 55 0 0 chr13 46145163 46145473 -55727696 + AluY SINE Alu 1 310 -1 303 321 50 46 chr13 46145473 46145586 -55727583 + HAL1b LINE L1 671 787 -561 24 32 0 0 chr13 46145626 46145657 -55727512 + AT_rich Low_complexity Low_complexity 1 31 0 1432 186 40 48 chr13 46146042 46146440 -55726729 - LTR37A LTR ERV1 0 426 32 478 152 0 57 chr13 46146446 46146551 -55726618 + AluSp SINE Alu 139 237 -76 24 32 0 0 chr13 46146629 46146660 -55726509 + AT_rich Low_complexity Low_complexity 1 31 0 778 208 74 92 chr13 46147283 46147547 -55725622 + MER92C LTR ERV1 1 324 -230 2291 219 20 25 chr13 46147547 46148109 -55725060 + MER89 LTR ERV1 1 559 0 778 208 74 92 chr13 46148109 46148310 -55724859 + MER92C LTR ERV1 324 527 -27 186 270 0 0 chr13 46148428 46148502 -55724667 + GA-rich Low_complexity Low_complexity 3 76 0 472 335 18 12 chr13 46148870 46149034 -55724135 - L2 LINE L2 0 3272 3108 187 286 184 20 chr13 46151090 46151237 -55721932 - MIR SINE MIR -4 258 88 26 64 0 0 chr13 46151519 46151566 -55721603 + AT_rich Low_complexity Low_complexity 1 47 0 2015 113 0 0 chr13 46151667 46151933 -55721236 - AluSg SINE Alu -44 266 1 3662 166 66 21 chr13 46153358 46153498 -55719671 - L1MA9 LINE L1 0 6312 6180 270 0 0 0 chr13 46153498 46153528 -55719641 + (TG)n Simple_repeat Simple_repeat 1 30 0 3662 166 66 21 chr13 46153528 46154159 -55719010 - L1MA9 LINE L1 -132 6180 5506 290 364 35 26 chr13 46154475 46154703 -55718466 + L2 LINE L2 1866 2095 -1219 195 69 0 0 chr13 46154744 46154773 -55718396 + (TG)n Simple_repeat Simple_repeat 2 30 0 334 151 34 50 chr13 46154773 46154892 -55718277 + (TA)n Simple_repeat Simple_repeat 2 118 0 296 80 22 88 chr13 46154916 46155053 -55718116 + (TA)n Simple_repeat Simple_repeat 2 129 0 637 318 95 64 chr13 46155061 46155200 -55717969 + L2 LINE L2 2214 2347 -967 273 57 0 0 chr13 46155200 46155235 -55717934 + (CA)n Simple_repeat Simple_repeat 2 36 0 637 318 95 64 chr13 46155235 46155571 -55717598 + L2 LINE L2 2347 2709 -605 1969 154 7 0 chr13 46155571 46155863 -55717306 + AluSg SINE Alu 1 294 -16 637 318 95 64 chr13 46155863 46155914 -55717255 + L2 LINE L2 2709 2757 -557 6525 198 135 17 chr13 46155936 46157301 -55715868 + MER52A LTR ERV1 230 1755 0 206 118 0 0 chr13 46157548 46157582 -55715587 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 244 381 76 8 chr13 46157660 46157778 -55715391 + L2 LINE L2 3134 3259 -13 351 239 18 18 chr13 46158250 46158363 -55714806 + Charlie7 DNA MER1_type 46 158 -2454 342 0 0 0 chr13 46158442 46158480 -55714689 + (TG)n Simple_repeat Simple_repeat 1 38 0 2145 125 0 0 chr13 46159261 46159566 -55713603 - AluSc SINE Alu -4 305 1 21 89 0 0 chr13 46159988 46160044 -55713125 + AT_rich Low_complexity Low_complexity 1 56 0 264 273 0 0 chr13 46160790 46160856 -55712313 - MIR SINE MIR -58 204 139 21 95 0 0 chr13 46161125 46161188 -55711981 + AT_rich Low_complexity Low_complexity 1 63 0 222 179 0 0 chr13 46161273 46161312 -55711857 - MIR SINE MIR -112 150 112 23 86 0 0 chr13 46161714 46161772 -55711397 + AT_rich Low_complexity Low_complexity 1 58 0 3484 251 43 44 chr13 46161823 46163211 -55709958 + L1PA12 LINE L1 1 2717 -4867 2665 183 22 15 chr13 46163217 46163763 -55709406 - L1P LINE L1 -2420 3726 3177 2245 91 0 3 chr13 46165569 46165866 -55707303 - AluSc SINE Alu -12 297 2 327 264 22 0 chr13 46165879 46165970 -55707199 + L1MCc LINE L1 111 203 -6220 413 246 30 30 chr13 46166235 46166438 -55706731 + L1MCc LINE L1 2888 3090 -4032 5020 198 20 21 chr13 46166452 46167618 -55705551 - L1 LINE L1 -1134 5012 3848 4040 180 17 10 chr13 46167633 46168461 -55704708 + L1MA7 LINE L1 5456 6289 -2 1430 254 65 61 chr13 46168584 46169408 -55703761 + L1MCc LINE L1 3067 3894 -3047 3357 256 46 45 chr13 46169433 46169546 -55703623 + L1M1 LINE L1 19 130 -7435 840 273 92 70 chr13 46169546 46170088 -55703081 - MER41C LTR ERV1 0 554 1 3357 256 46 45 chr13 46170088 46171323 -55701846 + L1M1 LINE L1 130 2054 -5511 1606 210 15 22 chr13 46171314 46171714 -55701455 + L1M1 LINE L1 2790 3186 -4379 * 580 266 122 18 chr13 46171711 46171997 -55701172 + L1MCc LINE L1 4912 5227 -1714 * 21 71 0 0 chr13 46172015 46172057 -55701112 + AT_rich Low_complexity Low_complexity 1 42 0 200 392 88 0 chr13 46174740 46174865 -55698304 + L2 LINE L2 3137 3272 0 2028 128 3 16 chr13 46175387 46175692 -55697477 - AluSx SINE Alu -11 301 1 350 293 34 83 chr13 46175873 46176078 -55697091 + MIR SINE MIR 31 225 -37 22 35 0 0 chr13 46176667 46176696 -55696473 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 46177598 46177622 -55695547 + AT_rich Low_complexity Low_complexity 1 24 0 229 284 95 0 chr13 46177655 46177729 -55695440 - MIR SINE MIR -20 242 162 2067 128 0 13 chr13 46177778 46178082 -55695087 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr13 46180034 46180055 -55693114 + AT_rich Low_complexity Low_complexity 1 21 0 2522 103 28 14 chr13 46180799 46181158 -55692011 + THE1B LTR MaLR 1 364 0 272 322 75 40 chr13 46181166 46181340 -55691829 - MIR SINE MIR -76 186 7 207 0 0 0 chr13 46181878 46181901 -55691268 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 22 56 0 0 chr13 46182032 46182068 -55691101 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 46182094 46182128 -55691041 + AT_rich Low_complexity Low_complexity 1 34 0 222 345 64 27 chr13 46182346 46182456 -55690713 - L2 LINE L2 0 3272 3159 23 33 0 0 chr13 46183020 46183050 -55690119 + AT_rich Low_complexity Low_complexity 1 30 0 1668 160 6 63 chr13 46183500 46183831 -55689338 - AluJo SINE Alu 0 312 1 326 325 88 0 chr13 46184735 46184895 -55688274 - MIR SINE MIR -2 260 87 22 0 0 0 chr13 46185075 46185097 -55688072 + AT_rich Low_complexity Low_complexity 1 22 0 236 359 52 36 chr13 46185305 46185553 -55687616 - MIR SINE MIR -1 261 10 37 0 0 0 chr13 46185941 46185978 -55687191 + AT_rich Low_complexity Low_complexity 1 37 0 37 39 0 0 chr13 46186155 46186206 -55686963 + AT_rich Low_complexity Low_complexity 1 51 0 217 241 35 0 chr13 46187136 46187194 -55685975 + (ACATG)n Simple_repeat Simple_repeat 1 60 0 310 387 0 8 chr13 46187260 46187384 -55685785 - MER5B DNA MER1_type -2 176 54 527 278 12 18 chr13 46187490 46187659 -55685510 + MLT1I LTR MaLR 11 178 -231 30 55 0 27 chr13 46189987 46190011 -55683158 + AT_rich Low_complexity Low_complexity 1 24 -47 1703 164 3 7 chr13 46190011 46190303 -55682866 - AluJo SINE Alu -21 291 1 30 55 0 27 chr13 46190303 46190351 -55682818 + AT_rich Low_complexity Low_complexity 24 71 0 22 0 0 0 chr13 46190527 46190549 -55682620 + AT_rich Low_complexity Low_complexity 1 22 0 30 45 0 0 chr13 46191322 46191366 -55681803 + AT_rich Low_complexity Low_complexity 1 44 0 31 68 0 0 chr13 46191591 46191650 -55681519 + AT_rich Low_complexity Low_complexity 1 59 0 3720 146 96 43 chr13 46191890 46193298 -55679871 + pTR5 LTR ERV1 743 2606 0 454 193 0 70 chr13 46193298 46193412 -55679757 + FLAM_C SINE Alu 28 133 -10 2134 100 3 22 chr13 46196243 46196554 -55676615 + AluSg SINE Alu 1 305 -5 1438 137 11 41 chr13 46196826 46196880 -55676289 + L1MA3 LINE L1 6036 6090 -215 1510 198 13 7 chr13 46196880 46197178 -55675991 + AluJb SINE Alu 1 300 -12 1438 137 11 41 chr13 46197178 46197393 -55675776 + L1MA3 LINE L1 6090 6297 -8 1794 126 9 73 chr13 46198579 46198896 -55674273 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr13 46198986 46199016 -55674153 + AT_rich Low_complexity Low_complexity 1 30 0 212 293 80 13 chr13 46199055 46199130 -55674039 - MIR SINE MIR -102 160 81 186 43 0 0 chr13 46201017 46201040 -55672129 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 27 49 0 0 chr13 46202101 46202142 -55671027 + AT_rich Low_complexity Low_complexity 1 41 0 421 144 56 0 chr13 46202847 46202937 -55670232 + LTR37A LTR ERV1 323 417 -9 240 86 0 0 chr13 46203763 46203798 -55669371 + (TG)n Simple_repeat Simple_repeat 2 36 0 274 254 74 70 chr13 46205044 46205343 -55667826 - L1MC5 LINE L1 -649 7312 7013 2070 139 0 3 chr13 46205511 46205821 -55667348 - AluSx SINE Alu -3 309 1 996 183 100 77 chr13 46206024 46206375 -55666794 - MLT1A1 LTR MaLR -2 363 1 539 323 69 5 chr13 46206389 46206606 -55666563 + MIR SINE MIR 2 232 -30 836 266 175 83 chr13 46206744 46206921 -55666248 + LTR28 LTR ERV1 1 160 -1595 2556 55 0 0 chr13 46206921 46207229 -55665940 - AluY SINE Alu -3 308 1 836 266 175 83 chr13 46207229 46208141 -55665028 + LTR28 LTR ERV1 160 1755 0 303 49 0 0 chr13 46209158 46209199 -55663970 + (TG)n Simple_repeat Simple_repeat 2 42 0 32 0 0 0 chr13 46210297 46210329 -55662840 + AT_rich Low_complexity Low_complexity 1 32 0 2553 118 15 18 chr13 46210762 46211161 -55662008 + MER4B LTR ERV1 3 400 -210 3206 133 72 0 chr13 46211161 46211678 -55661491 + MER41C LTR ERV1 1 554 0 19857 108 38 6 chr13 46211764 46214724 -55658445 + MER41C-int LTR ERV1 3 3055 -4701 1759 76 0 36 chr13 46214719 46214969 -55658200 + PRIMA41-int LTR ERV1 4394 4634 -3122 * 1500 110 0 0 chr13 46214957 46215166 -55658003 + PRIMA41-int LTR ERV1 5144 5352 -2404 * 5183 172 28 21 chr13 46215184 46216646 -55656523 - L1M2 LINE L1 -654 5658 4195 23 33 0 0 chr13 46217295 46217325 -55655844 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 46217584 46217613 -55655556 + AT_rich Low_complexity Low_complexity 1 29 0 611 230 47 0 chr13 46217613 46217761 -55655408 - L1PB4 LINE L1 0 6156 6002 1725 177 24 6 chr13 46217886 46218219 -55654950 - MER44D DNA MER2_type 0 609 1 928 133 0 97 chr13 46219812 46219943 -55653226 - MER4E LTR ERV1 -10 756 647 2116 114 0 0 chr13 46219943 46220245 -55652924 - AluSx SINE Alu 0 304 3 928 133 0 97 chr13 46220245 46220307 -55652862 - MER4E LTR ERV1 -119 647 581 476 105 13 13 chr13 46220409 46220485 -55652684 - MER4B LTR ERV1 -138 472 397 3172 143 57 13 chr13 46220485 46220753 -55652416 - MER41C LTR ERV1 0 554 299 1893 137 31 0 chr13 46220753 46221045 -55652124 + AluSx SINE Alu 1 301 -11 3172 143 57 13 chr13 46221045 46221307 -55651862 - MER41C LTR ERV1 -255 299 1 646 83 0 0 chr13 46221307 46221391 -55651778 - MER41C-int LTR ERV1 0 7756 7673 3225 172 36 9 chr13 46221391 46222048 -55651121 + L1MA9 LINE L1 5638 6312 0 302 276 171 6 chr13 46222382 46222563 -55650606 - MLT1H1 LTR MaLR -34 521 311 368 289 122 41 chr13 46222849 46223046 -55650123 + MIR SINE MIR 23 235 -27 21 0 0 0 chr13 46223057 46223078 -55650091 + AT_rich Low_complexity Low_complexity 1 21 0 1200 253 59 18 chr13 46223547 46223887 -55649282 + MLT1A1 LTR MaLR 1 354 -11 2765 185 70 45 chr13 46224784 46225358 -55647811 + LTR69 LTR ERVL 1 588 0 2279 66 0 10 chr13 46226146 46226448 -55646721 + AluY SINE Alu 5 303 -8 1831 70 0 12 chr13 46226453 46226694 -55646475 + AluSc SINE Alu 72 309 0 2278 150 93 3 chr13 46227065 46227452 -55645717 + MSTC LTR MaLR 1 422 -6 961 201 18 14 chr13 46227692 46227911 -55645258 + L1MB1 LINE L1 5946 6165 -3 325 365 0 11 chr13 46228911 46229089 -55644080 + (CATA)n Simple_repeat Simple_repeat 2 177 0 217 143 0 54 chr13 46229832 46229845 -55643324 + (TAAAA)n Simple_repeat Simple_repeat 5 17 -40 2166 114 0 3 chr13 46229845 46230142 -55643027 + AluSq SINE Alu 1 296 -17 217 143 0 54 chr13 46230142 46230184 -55642985 + (TAAAA)n Simple_repeat Simple_repeat 17 57 0 27 0 0 0 chr13 46230311 46230338 -55642831 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr13 46230429 46230472 -55642697 + AT_rich Low_complexity Low_complexity 1 43 0 413 283 121 49 chr13 46230675 46231070 -55642099 - L1 LINE L1 -2028 4118 3690 36 91 0 0 chr13 46231406 46231505 -55641664 + AT_rich Low_complexity Low_complexity 1 99 0 21 57 0 0 chr13 46231872 46231907 -55641262 + AT_rich Low_complexity Low_complexity 1 35 0 1067 206 49 4 chr13 46232614 46232857 -55640312 - L1MA7 LINE L1 -352 5939 5686 1363 199 26 7 chr13 46232857 46233163 -55640006 + L1MA7 LINE L1 5975 6286 -5 62 46 0 9 chr13 46233168 46233199 -55639970 + AT_rich Low_complexity Low_complexity 1 31 -76 2056 120 6 32 chr13 46233199 46233515 -55639654 + AluSx SINE Alu 1 308 -4 62 46 0 9 chr13 46233515 46233591 -55639578 + AT_rich Low_complexity Low_complexity 31 107 0 27 96 0 0 chr13 46233924 46234007 -55639162 + AT_rich Low_complexity Low_complexity 1 83 0 22 80 0 0 chr13 46234646 46234696 -55638473 + AT_rich Low_complexity Low_complexity 1 50 0 292 203 13 25 chr13 46236453 46236532 -55636637 + GA-rich Low_complexity Low_complexity 2 79 0 297 342 44 51 chr13 46237556 46237714 -55635455 + MIR3 SINE MIR 14 170 -38 29 47 0 0 chr13 46238545 46238588 -55634581 + AT_rich Low_complexity Low_complexity 1 43 0 240 368 60 8 chr13 46239156 46239289 -55633880 - MIR SINE MIR -60 202 63 347 285 48 102 chr13 46239323 46239509 -55633660 + MER5B DNA MER1_type 3 178 0 21 36 0 0 chr13 46240270 46240298 -55632871 + AT_rich Low_complexity Low_complexity 1 28 0 180 125 0 0 chr13 46240826 46240858 -55632311 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 306 0 0 0 chr13 46241453 46241487 -55631682 + (TA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr13 46242272 46242303 -55630866 + AT_rich Low_complexity Low_complexity 1 31 0 1948 147 0 0 chr13 46242410 46242702 -55630467 - AluSx SINE Alu -18 294 3 1052 182 15 0 chr13 46242796 46242999 -55630170 + MER2 DNA MER2_type 1 206 -139 203 200 0 18 chr13 46242999 46243054 -55630115 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 26 0 0 0 chr13 46243129 46243155 -55630014 + AT_rich Low_complexity Low_complexity 1 26 0 1266 203 126 58 chr13 46243172 46243601 -55629568 - MLT1C LTR MaLR -9 458 1 181 238 24 95 chr13 46244755 46244881 -55628288 - L3 LINE CR1 -629 948 832 1110 83 13 13 chr13 46245846 46246002 -55627167 + L1PA7 LINE L1 5996 6151 -3 22 35 0 0 chr13 46246032 46246061 -55627108 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 46246407 46246428 -55626741 + AT_rich Low_complexity Low_complexity 1 21 0 255 254 14 0 chr13 46247067 46247138 -55626031 - L1ME2 LINE L1 -203 5961 5890 321 292 17 17 chr13 46247609 46247642 -55625527 - L1MA10 LINE L1 0 6334 6302 1798 265 64 43 chr13 46247642 46248924 -55624245 - L1ME1 LINE L1 -24 6142 4826 2072 128 0 0 chr13 46248939 46249235 -55623934 - AluSx SINE Alu -16 296 1 1021 244 97 44 chr13 46249266 46249763 -55623406 + LTR28 LTR ERV1 1 1231 -138 560 282 48 4 chr13 46249804 46250031 -55623138 - L1MEc LINE L1 -3691 2524 2288 1151 268 80 4 chr13 46250044 46250506 -55622663 - L1MEc LINE L1 -4259 2137 1641 998 318 43 17 chr13 46250537 46251000 -55622169 - L1MEc LINE L1 -5801 595 121 22 0 0 0 chr13 46251210 46251232 -55621937 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 46251574 46251596 -55621573 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr13 46251767 46251812 -55621357 + AT_rich Low_complexity Low_complexity 1 45 0 212 341 74 30 chr13 46251869 46252004 -55621165 - MIR3 SINE MIR -1 207 67 213 39 0 0 chr13 46252761 46252787 -55620382 + (CA)n Simple_repeat Simple_repeat 1 26 0 737 152 80 109 chr13 46252913 46253215 -55619954 - L1MA9 LINE L1 -10 6302 6010 405 0 0 0 chr13 46253882 46253927 -55619242 + (TG)n Simple_repeat Simple_repeat 2 46 0 787 169 34 17 chr13 46254178 46254356 -55618813 - MER53 DNA DNA -1 188 8 2081 121 0 19 chr13 46254356 46254671 -55618498 - AluSc SINE Alu 0 309 1 30 0 0 0 chr13 46255577 46255607 -55617562 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 46256475 46256496 -55616673 + AT_rich Low_complexity Low_complexity 1 21 0 353 191 44 0 chr13 46256850 46256918 -55616251 + L2 LINE L2 3189 3259 -54 1481 34 0 0 chr13 46258871 46259067 -55614102 + L1PA4 LINE L1 5968 6163 0 2092 77 14 11 chr13 46259138 46259424 -55613745 - AluSc SINE Alu -22 287 1 241 277 117 30 chr13 46259487 46259664 -55613505 + L1ME3A LINE L1 4577 4780 -1366 2013 109 0 3 chr13 46259664 46259968 -55613201 + AluY SINE Alu 1 303 -8 241 277 117 30 chr13 46259968 46260021 -55613148 + L1ME3A LINE L1 4780 4827 -1319 818 150 75 12 chr13 46260128 46260288 -55612881 + THE1C LTR MaLR 1 170 -205 4316 124 89 102 chr13 46260297 46261550 -55611619 - pTR5 LTR ERV1 -143 2295 744 926 145 34 44 chr13 46261551 46261762 -55611407 + THE1C LTR MaLR 181 375 0 832 248 85 62 chr13 46261941 46262495 -55610674 + L1ME3A LINE L1 5410 5996 -168 34 55 0 0 chr13 46263099 46263154 -55610015 + AT_rich Low_complexity Low_complexity 1 55 0 1531 186 36 7 chr13 46263313 46263587 -55609582 - AluJo SINE Alu -30 282 1 25 0 0 0 chr13 46264429 46264454 -55608715 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr13 46265461 46265495 -55607674 + AT_rich Low_complexity Low_complexity 1 34 0 264 257 0 40 chr13 46266640 46266714 -55606455 + L2 LINE L2 3228 3298 -15 232 275 161 34 chr13 46267325 46267474 -55605695 - LTR41 LTR ERVL -6 767 600 439 213 6 98 chr13 46267802 46267985 -55605184 - LTR41 LTR ERVL -590 183 18 1433 233 70 6 chr13 46268455 46268798 -55604371 + MLT1A1 LTR MaLR 1 365 0 292 301 103 15 chr13 46268829 46268965 -55604204 - MIR SINE MIR -105 157 10 23 33 0 0 chr13 46269050 46269080 -55604089 + AT_rich Low_complexity Low_complexity 1 30 0 900 186 18 63 chr13 46269172 46269393 -55603776 - AluJo SINE Alu -14 298 88 724 251 55 5 chr13 46270197 46270396 -55602773 - MER58B DNA MER1_type -28 313 105 735 213 0 38 chr13 46271996 46272156 -55601013 + FRAM SINE Alu 1 154 -12 1526 314 83 39 chr13 46272501 46273597 -55599572 + L2 LINE L2 2060 3208 -105 284 266 25 0 chr13 46274229 46274308 -55598861 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 260 341 23 47 chr13 46275058 46275187 -55597982 - MIR3 SINE MIR -19 189 64 21 57 0 0 chr13 46275232 46275267 -55597902 + AT_rich Low_complexity Low_complexity 1 35 0 215 330 71 0 chr13 46275923 46276035 -55597134 + L2 LINE L2 3175 3294 -19 24 67 0 0 chr13 46276594 46276639 -55596530 + AT_rich Low_complexity Low_complexity 1 45 0 329 386 90 6 chr13 46277048 46277369 -55595800 - L2 LINE L2 -809 2505 2158 1771 132 54 4 chr13 46277619 46277899 -55595270 + AluSx SINE Alu 7 300 -12 232 258 0 62 chr13 46278147 46278244 -55594925 + L1MC4 LINE L1 6614 6704 -1338 278 167 17 0 chr13 46278245 46278305 -55594864 + (TA)n Simple_repeat Simple_repeat 1 61 0 346 196 21 0 chr13 46278465 46278562 -55594607 + (TA)n Simple_repeat Simple_repeat 2 100 0 1321 196 98 13 chr13 46278563 46278879 -55594290 + MER7A DNA MER2_type 3 343 -3 251 200 18 0 chr13 46278996 46279051 -55594118 - MER58 DNA MER1_type -4 2416 2361 180 0 0 0 chr13 46279063 46279083 -55594086 + (TTG)n Simple_repeat Simple_repeat 2 21 0 186 171 0 0 chr13 46279238 46279279 -55593890 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 60 0 0 chr13 46279577 46279627 -55593542 + AT_rich Low_complexity Low_complexity 1 50 0 2078 124 0 3 chr13 46279746 46280044 -55593125 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr13 46280409 46280435 -55592734 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 46280649 46280670 -55592499 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 46280750 46280774 -55592395 + AT_rich Low_complexity Low_complexity 1 24 0 401 304 48 82 chr13 46281614 46281884 -55591285 + MIR SINE MIR 2 262 0 24 32 0 0 chr13 46282568 46282599 -55590570 + AT_rich Low_complexity Low_complexity 1 31 0 862 221 29 5 chr13 46282610 46282814 -55590355 - MER2 DNA MER2_type -135 210 2 1668 66 0 9 chr13 46283761 46283973 -55589196 + AluSc SINE Alu 97 306 -3 231 299 25 113 chr13 46284000 46284102 -55589067 + MIR SINE MIR 57 134 -128 1759 111 111 4 chr13 46284102 46284381 -55588788 + AluSg SINE Alu 1 309 -1 231 299 25 113 chr13 46284381 46284482 -55588687 + MIR SINE MIR 134 242 -20 1164 247 40 16 chr13 46284483 46284928 -55588241 - MER68 LTR ERV1 -2 560 15 1153 125 112 24 chr13 46284974 46285247 -55587922 - THE1B LTR MaLR 0 375 1 743 304 53 25 chr13 46286198 46286629 -55586540 - HsTC2 DNA Tc2 -42 1856 1238 2720 244 95 53 chr13 46286711 46287724 -55585445 + L1M3d LINE L1 27 1081 -4810 9511 237 63 44 chr13 46287781 46288209 -55584960 + L1M3 LINE L1 1016 1434 -4970 2001 111 29 0 chr13 46288209 46288489 -55584680 - AluSq SINE Alu -16 297 10 9511 237 63 44 chr13 46288489 46291449 -55581720 + L1M3 LINE L1 1434 4534 -1870 180 0 0 0 chr13 46291449 46291469 -55581700 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 9511 237 63 44 chr13 46291469 46292813 -55580356 + L1M3 LINE L1 4534 5851 -553 205 237 17 17 chr13 46293205 46293264 -55579905 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 * 235 204 0 0 chr13 46293263 46293307 -55579862 + GA-rich Low_complexity Low_complexity 2 45 0 1998 286 135 32 chr13 46293326 46294069 -55579100 - HsTC2 DNA Tc2 -782 1116 242 2438 78 0 3 chr13 46294069 46294378 -55578791 + AluSc SINE Alu 1 308 -1 1998 286 135 32 chr13 46294378 46294632 -55578537 - HsTC2 DNA Tc2 -1656 242 16 1473 174 152 0 chr13 46295395 46295705 -55577464 - LTR18A LTR ERVL 0 357 1 2340 223 66 12 chr13 46296511 46297089 -55576080 + MER76 LTR ERV 80 688 0 296 222 25 25 chr13 46297254 46297335 -55575834 + GA-rich Low_complexity Low_complexity 1 81 0 2057 135 0 7 chr13 46297768 46298064 -55575105 + AluSx SINE Alu 5 298 -14 306 304 157 0 chr13 46299883 46299998 -55573171 - L2 LINE L2 0 3272 3140 40 59 0 0 chr13 46300348 46300416 -55572753 + AT_rich Low_complexity Low_complexity 1 68 0 24 32 0 0 chr13 46300616 46300647 -55572522 + AT_rich Low_complexity Low_complexity 1 31 0 352 243 39 19 chr13 46300767 46300870 -55572299 - LTR40a LTR ERVL 0 519 415 23 68 0 0 chr13 46300875 46300919 -55572250 + AT_rich Low_complexity Low_complexity 1 44 0 1106 261 27 20 chr13 46300952 46301251 -55571918 - HERVL40 LTR ERVL -2661 2869 2569 * 1378 249 41 25 chr13 46301227 46301593 -55571576 - HERVL40 LTR ERVL -3107 2423 2052 663 268 16 16 chr13 46301591 46301774 -55571395 - HERVL40 LTR ERVL -3910 1620 1438 * 22 35 0 0 chr13 46301782 46301811 -55571358 + AT_rich Low_complexity Low_complexity 1 29 0 895 294 119 20 chr13 46301825 46302169 -55571000 - LTR40a LTR ERVL -127 392 15 207 232 0 0 chr13 46303089 46303145 -55570024 + CT-rich Low_complexity Low_complexity 2 57 0 29 47 0 0 chr13 46303283 46303326 -55569843 + AT_rich Low_complexity Low_complexity 1 43 0 2074 120 131 16 chr13 46303607 46303989 -55569180 - MSTA LTR MaLR 0 428 3 405 39 0 0 chr13 46304701 46304752 -55568417 + (TG)n Simple_repeat Simple_repeat 2 52 0 28 29 0 0 chr13 46304822 46304857 -55568312 + AT_rich Low_complexity Low_complexity 1 35 0 1420 258 46 15 chr13 46305072 46305529 -55567640 - LTR65 LTR ERV1 -18 651 181 436 285 67 6 chr13 46305670 46305849 -55567320 - HAL1b LINE L1 -821 527 338 26 0 0 0 chr13 46305849 46305875 -55567294 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 46306930 46306951 -55566218 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 46309091 46309115 -55564054 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 46309294 46309317 -55563852 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 46310278 46310306 -55562863 + AT_rich Low_complexity Low_complexity 1 28 0 312 275 100 8 chr13 46310583 46310703 -55562466 - MSTC LTR MaLR -297 131 1 1929 206 89 24 chr13 46310831 46310969 -55562200 - MER82 DNA MER2_type -1 652 524 2001 126 0 13 chr13 46310969 46311270 -55561899 - AluSq SINE Alu -16 297 1 1929 206 89 24 chr13 46311270 46311695 -55561474 - MER82 DNA MER2_type -129 524 1 1134 268 89 27 chr13 46312085 46312683 -55560486 - L1M4 LINE L1 -797 5349 4715 24 0 0 0 chr13 46312942 46312966 -55560203 + AT_rich Low_complexity Low_complexity 1 24 0 1637 187 13 66 chr13 46313286 46313591 -55559578 + MER46B DNA MER2_type 3 161 -2570 540 252 16 0 chr13 46313591 46313714 -55559455 + FLAM_C SINE Alu 3 127 -6 1637 187 13 66 chr13 46313714 46313787 -55559382 + MER46B DNA MER2_type 161 236 0 211 271 0 0 chr13 46313789 46313837 -55559332 + (TG)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr13 46314464 46314496 -55558673 + AT_rich Low_complexity Low_complexity 1 32 0 219 323 0 0 chr13 46315405 46315470 -55557699 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 377 429 42 8 chr13 46315650 46316035 -55557134 - L3 LINE CR1 -989 588 191 21 0 0 0 chr13 46316627 46316648 -55556521 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 46317074 46317109 -55556060 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 46317165 46317209 -55555960 + AT_rich Low_complexity Low_complexity 1 44 0 757 261 128 0 chr13 46317340 46317551 -55555618 + MER8 DNA MER2_type 2 239 0 26 30 0 0 chr13 46319485 46319518 -55553651 + AT_rich Low_complexity Low_complexity 1 33 0 12717 240 31 27 chr13 46319692 46320031 -55553138 - L1PA16 LINE L1 -5 7599 7263 1816 98 52 101 chr13 46320031 46320357 -55552812 - AluSx SINE Alu -2 310 1 12717 240 31 27 chr13 46320357 46321642 -55551527 - L1PA16 LINE L1 -341 7263 5984 225 0 0 0 chr13 46321642 46321667 -55551502 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 12717 240 31 27 chr13 46321667 46325456 -55547713 - L1PA16 LINE L1 -1620 5984 2189 355 298 58 44 chr13 46325781 46326006 -55547163 - L1PA16 LINE L1 -5278 2296 2069 735 234 19 0 chr13 46326034 46326192 -55546977 - MER2 DNA MER2_type -184 161 1 196 341 58 36 chr13 46326292 46326430 -55546739 - L2 LINE L2 -234 3038 2898 332 313 0 0 chr13 46326511 46326610 -55546559 - L2 LINE L2 -572 2742 2644 401 179 32 0 chr13 46326955 46327050 -55546119 + L1MA7 LINE L1 6193 6290 -1 27 0 0 0 chr13 46327102 46327129 -55546040 + AT_rich Low_complexity Low_complexity 1 27 0 345 221 39 0 chr13 46327260 46327337 -55545832 - MER116 DNA Mariner 0 80 1 2035 101 39 0 chr13 46327353 46327639 -55545530 - AluSc SINE Alu -12 297 1 289 285 106 8 chr13 46328183 46328306 -55544863 + MIR SINE MIR 95 229 -33 278 372 7 29 chr13 46328495 46328632 -55544537 + L2 LINE L2 3180 3313 0 25 51 0 0 chr13 46329930 46329969 -55543200 + AT_rich Low_complexity Low_complexity 1 39 0 1711 183 0 30 chr13 46331265 46331566 -55541603 + AluSx SINE Alu 1 292 -20 1450 208 3 21 chr13 46331608 46331919 -55541250 - AluJb SINE Alu 0 306 1 238 293 0 0 chr13 46332045 46332103 -55541066 - L2 LINE L2 0 3272 3215 1041 276 7 32 chr13 46332177 46332460 -55540709 - LTR40a LTR ERVL 0 519 244 1276 210 12 35 chr13 46332514 46332852 -55540317 - L1MB8 LINE L1 -6 6172 5843 493 234 136 16 chr13 46332852 46333077 -55540092 - LTR40a LTR ERVL -267 252 3 468 349 54 28 chr13 46333342 46333694 -55539475 - L2 LINE L2 -389 2925 2565 913 228 87 98 chr13 46333864 46334333 -55538836 - MLT2C2 LTR ERVL 0 464 1 1977 123 0 29 chr13 46334729 46335037 -55538132 + AluSg SINE Alu 1 299 -11 327 315 105 21 chr13 46335775 46335918 -55537251 + MIR SINE MIR 25 179 -83 1093 141 6 0 chr13 46336006 46336169 -55537000 - AluSc SINE Alu -9 300 137 875 136 43 0 chr13 46336300 46336462 -55536707 - L1MA5 LINE L1 -2 6298 6130 554 247 29 6 chr13 46336462 46336632 -55536537 - MLT2B1 LTR ERVL -346 174 1 267 149 50 56 chr13 46336768 46336876 -55536293 - L1MA5 LINE L1 -169 6131 6028 182 225 12 0 chr13 46336929 46337009 -55536160 + (TA)n Simple_repeat Simple_repeat 2 82 0 23 33 0 0 chr13 46340368 46340398 -55532771 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 46340467 46340497 -55532672 + AT_rich Low_complexity Low_complexity 1 30 0 25 112 0 0 chr13 46340518 46340634 -55532535 + AT_rich Low_complexity Low_complexity 1 116 0 753 61 0 0 chr13 46340958 46341057 -55532112 + (TCCA)n Simple_repeat Simple_repeat 1 99 0 608 76 0 11 chr13 46341309 46341401 -55531768 + (TCCA)n Simple_repeat Simple_repeat 1 91 0 337 85 78 23 chr13 46342966 46343095 -55530074 + (TATAA)n Simple_repeat Simple_repeat 1 136 0 3156 249 47 45 chr13 46343101 46344911 -55528258 - L1P5 LINE L1 -419 5732 3921 1270 258 63 52 chr13 46344909 46345163 -55528006 - L1MEc LINE L1 -5544 852 602 * 2292 97 0 0 chr13 46345163 46345474 -55527695 - AluY SINE Alu 0 311 1 1270 258 63 52 chr13 46345474 46345762 -55527407 - L1MEc LINE L1 -5794 602 304 4266 167 0 8 chr13 46345815 46346522 -55526647 + HUERS-P3 LTR ERV1 2016 2716 -6203 893 162 11 11 chr13 46346533 46346712 -55526457 - L1MA8 LINE L1 -101 6190 6012 2797 13 0 0 chr13 46347694 46348005 -55525164 - AluYa5 SINE Alu 0 311 1 1698 114 98 0 chr13 46348113 46348367 -55524802 - AluSx SINE Alu -20 292 14 219 100 0 50 chr13 46349122 46349162 -55524007 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 21 71 0 0 chr13 46349961 46350003 -55523166 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 46350435 46350456 -55522713 + AT_rich Low_complexity Low_complexity 1 21 0 794 339 122 38 chr13 46351278 46352263 -55520906 + L2 LINE L2 819 1886 -1428 1298 183 0 25 chr13 46352299 46352534 -55520635 - AluJo SINE Alu -13 299 71 202 328 66 16 chr13 46352642 46352764 -55520405 + L2 LINE L2 3119 3246 -67 586 310 67 19 chr13 46353096 46353408 -55519761 + LTR16A LTR ERVL 51 374 -76 1237 339 75 21 chr13 46353506 46354333 -55518836 + HERV16 LTR ERVL 22 893 -4103 272 287 155 29 chr13 46354373 46354547 -55518622 + HERV16 LTR ERVL 967 1162 -3834 * 404 353 31 5 chr13 46354546 46354750 -55518419 + ERVL LTR ERVL 4446 4672 -1003 219 273 18 0 chr13 46354808 46354863 -55518306 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 21 36 0 0 chr13 46355039 46355067 -55518102 + AT_rich Low_complexity Low_complexity 1 28 0 388 268 211 33 chr13 46355252 46355465 -55517704 + LTR41 LTR ERVL 510 760 -13 314 253 36 0 chr13 46357533 46357616 -55515553 + MIR3 SINE MIR 118 203 -5 705 192 8 0 chr13 46357777 46357907 -55515262 + FLAM_C SINE Alu 3 133 0 231 310 82 13 chr13 46358773 46358931 -55514238 + L1MEd LINE L1 562 730 -5389 21 0 0 0 chr13 46358974 46358995 -55514174 + AT_rich Low_complexity Low_complexity 1 21 0 410 214 147 142 chr13 46359026 46359414 -55513755 + MLT1A2 LTR MaLR 1 390 0 1139 272 196 40 chr13 46359426 46360084 -55513085 - LTR41 LTR ERVL -6 767 7 282 315 50 31 chr13 46360422 46360781 -55512388 + L1MEd LINE L1 2621 2986 -3143 380 301 22 16 chr13 46361041 46361224 -55511945 + LTR67 LTR ERVL 372 555 -2 218 361 50 17 chr13 46361598 46361717 -55511452 + MIR SINE MIR 28 150 -112 32 43 0 0 chr13 46362204 46362250 -55510919 + AT_rich Low_complexity Low_complexity 1 46 0 2629 250 49 21 chr13 46362686 46363546 -55509623 + L1MB7 LINE L1 5293 6176 -8 543 189 16 16 chr13 46363809 46363931 -55509238 + L1MC5 LINE L1 7792 7913 -48 25 65 0 0 chr13 46363941 46363987 -55509182 + AT_rich Low_complexity Low_complexity 1 46 0 230 356 122 0 chr13 46366319 46366409 -55506760 - MIR SINE MIR -130 132 32 505 301 60 18 chr13 46366469 46366805 -55506364 - L1M4 LINE L1 -2469 3677 3328 23 78 0 0 chr13 46367806 46367857 -55505312 + AT_rich Low_complexity Low_complexity 1 51 0 852 325 84 34 chr13 46367925 46368458 -55504711 - L2 LINE L2 -1227 2087 1528 634 252 44 40 chr13 46368590 46368864 -55504305 - L1 LINE L1 -2712 3434 3160 1638 210 27 22 chr13 46368866 46369276 -55503893 + L1MEd LINE L1 3462 3873 -2256 4753 144 53 39 chr13 46369280 46370261 -55502908 + L1PA16 LINE L1 5157 6157 -9 28 29 0 0 chr13 46370738 46370773 -55502396 + AT_rich Low_complexity Low_complexity 1 35 0 583 239 51 31 chr13 46371178 46371524 -55501645 - LTR40b LTR ERVL 0 462 3 210 191 0 0 chr13 46373712 46373759 -55499410 + GA-rich Low_complexity Low_complexity 21 67 0 2337 171 85 103 chr13 46373904 46374876 -55498293 + L1MA7 LINE L1 5164 6113 -178 6471 144 49 18 chr13 46374876 46376055 -55497114 + Tigger3b DNA MER2_type 3 1218 -13 811 133 57 0 chr13 46376062 46376220 -55496949 + L1MA7 LINE L1 6123 6289 -2 24 0 0 0 chr13 46376400 46376424 -55496745 + AT_rich Low_complexity Low_complexity 1 24 0 577 287 99 36 chr13 46377903 46378345 -55494824 - L1MEc LINE L1 -4788 1608 1139 1060 297 96 27 chr13 46378459 46379119 -55494050 - L1MEc LINE L1 -5320 885 181 1399 279 16 16 chr13 46379159 46379448 -55493721 - MER110 LTR ERV1 -7 484 193 1991 142 3 0 chr13 46379448 46379751 -55493418 - AluSx SINE Alu -8 304 1 1399 279 16 16 chr13 46379751 46379887 -55493282 - MER110 LTR ERV1 -297 194 59 2150 109 6 6 chr13 46380636 46380949 -55492220 - AluSq SINE Alu 0 313 1 2702 211 47 7 chr13 46383199 46383876 -55489293 - MER67C LTR ERV1 -3 707 4 294 185 37 0 chr13 46383963 46384044 -55489125 + (TATG)n Simple_repeat Simple_repeat 2 85 0 478 215 38 174 chr13 46384044 46384337 -55488832 - MLT2B1 LTR ERVL -40 480 228 651 192 86 0 chr13 46384477 46384628 -55488541 - MLT2D LTR ERVL -250 164 1 333 0 0 0 chr13 46385773 46385810 -55487359 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr13 46386137 46386180 -55486989 + AT_rich Low_complexity Low_complexity 1 43 0 35 54 0 0 chr13 46386520 46386576 -55486593 + AT_rich Low_complexity Low_complexity 1 56 0 331 271 47 0 chr13 46386607 46386692 -55486477 - MIR SINE MIR -9 253 165 1946 114 7 0 chr13 46386693 46386999 -55486170 + AluSg SINE Alu 1 308 0 1916 167 43 0 chr13 46387017 46387346 -55485823 - MER7A DNA MER2_type 0 346 6 464 291 43 47 chr13 46389082 46389316 -55483853 + MIR SINE MIR 28 260 -2 362 313 99 15 chr13 46389431 46389562 -55483607 + L3 LINE CR1 1417 1558 -19 193 278 0 56 chr13 46390399 46390471 -55482698 - L2 LINE L2 0 3313 3246 45 75 0 0 chr13 46391215 46391309 -55481860 + AT_rich Low_complexity Low_complexity 1 94 0 45 34 0 0 chr13 46392423 46392482 -55480687 + AT_rich Low_complexity Low_complexity 1 59 0 2093 123 7 0 chr13 46392918 46393210 -55479959 + AluSp SINE Alu 4 297 -16 1343 306 65 17 chr13 46394545 46395031 -55478138 + L1ME3A LINE L1 5410 5934 -236 1524 161 4 0 chr13 46395031 46395285 -55477884 - AluSq SINE Alu -58 255 1 1343 306 65 17 chr13 46395285 46395432 -55477737 + L1ME3A LINE L1 5934 6073 -97 24 53 0 0 chr13 46395648 46395686 -55477483 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr13 46396213 46396256 -55476913 + AT_rich Low_complexity Low_complexity 1 43 0 29 84 0 0 chr13 46397303 46397374 -55475795 + AT_rich Low_complexity Low_complexity 1 71 0 252 325 82 24 chr13 46398215 46398421 -55474748 + LTR33 LTR ERVL 304 521 0 2075 132 3 0 chr13 46398877 46399187 -55473982 + AluSx SINE Alu 1 311 -1 245 282 64 27 chr13 46399580 46399690 -55473479 - MLT1J1 LTR MaLR -11 435 322 408 338 0 13 chr13 46399750 46399904 -55473265 - MLT1J1 LTR MaLR -292 154 3 405 0 0 0 chr13 46400318 46400363 -55472806 + (CA)n Simple_repeat Simple_repeat 2 46 0 2123 61 13 58 chr13 46400515 46400828 -55472341 - AluY SINE Alu -12 299 1 3517 188 20 4 chr13 46400855 46401590 -55471579 + L1MB3 LINE L1 5434 6180 -3 35 41 0 0 chr13 46401862 46401911 -55471258 + AT_rich Low_complexity Low_complexity 1 49 0 234 0 0 0 chr13 46403036 46403062 -55470107 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr13 46404014 46404049 -55469120 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 46404131 46404160 -55469009 + AT_rich Low_complexity Low_complexity 1 29 0 240 59 0 0 chr13 46404218 46404252 -55468917 + (TA)n Simple_repeat Simple_repeat 2 35 0 225 307 60 24 chr13 46404283 46404449 -55468720 - L1ME LINE L1 -444 5677 5506 2132 81 4 0 chr13 46406226 46406549 -55466620 + AluSg SINE Alu 7 330 0 21 0 0 0 chr13 46407943 46407964 -55465205 + AT_rich Low_complexity Low_complexity 1 21 0 1579 132 8 0 chr13 46408339 46408574 -55464595 - Tigger5 DNA MER2_type -1 2322 2086 201 326 99 52 chr13 46409514 46409897 -55463272 - L2 LINE L2 -1216 2098 1698 2422 62 3 3 chr13 46410498 46410806 -55462363 - AluY SINE Alu -3 308 1 259 378 6 13 chr13 46410906 46411062 -55462107 - L2 LINE L2 -2430 884 730 485 385 20 8 chr13 46411497 46411746 -55461423 - MIR SINE MIR 0 262 11 1253 299 22 11 chr13 46412015 46412383 -55460786 - LTR16C LTR ERVL -4 487 116 3536 186 82 4 chr13 46413838 46414618 -55458551 - L1MB1 LINE L1 -31 5961 5121 1665 237 66 31 chr13 46414613 46415997 -55457172 - L1MB1 LINE L1 -2753 3217 1694 * 389 168 2 0 chr13 46416013 46416081 -55457088 - AluS SINE Alu -243 60 1 2110 271 59 47 chr13 46416082 46416304 -55456865 - L1MB1 LINE L1 -4723 1168 950 2242 60 22 35 chr13 46416304 46416618 -55456551 - AluY SINE Alu -1 310 1 2110 271 59 47 chr13 46416618 46417774 -55455395 - L1MB1 LINE L1 -4941 950 1 21 0 0 0 chr13 46418103 46418124 -55455045 + AT_rich Low_complexity Low_complexity 1 21 0 30606 117 21 59 chr13 46419571 46423832 -55449337 - L1P3 LINE L1 -621 5551 1572 2015 119 0 0 chr13 46423832 46424109 -55449060 + AluSg SINE Alu 31 307 -3 30606 117 21 59 chr13 46424109 46425614 -55447555 - L1P3 LINE L1 -4600 1572 12 295 265 68 41 chr13 46425706 46425853 -55447316 + MIR SINE MIR 112 262 0 22 0 0 0 chr13 46426030 46426052 -55447117 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr13 46426549 46426589 -55446580 + AT_rich Low_complexity Low_complexity 1 40 0 230 357 0 0 chr13 46427386 46427456 -55445713 + MER45 DNA AcHobo 2 71 -969 374 292 28 28 chr13 46427824 46427968 -55445201 - LTR16B LTR ERVL 0 464 321 309 222 0 0 chr13 46428243 46428306 -55444863 + MER90 LTR ERV1 150 212 -402 437 288 48 7 chr13 46428379 46428525 -55444644 + MIR SINE MIR 96 247 -15 306 0 0 0 chr13 46428711 46428745 -55444424 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2010 135 0 3 chr13 46428759 46429048 -55444121 - AluSq SINE Alu -25 288 1 1245 273 89 42 chr13 46429063 46429756 -55443413 - MER20B DNA MER1_type -1 782 57 41 66 0 0 chr13 46430292 46430368 -55442801 + AT_rich Low_complexity Low_complexity 1 76 0 28 29 0 0 chr13 46430550 46430585 -55442584 + AT_rich Low_complexity Low_complexity 1 35 0 2072 136 0 3 chr13 46430863 46431164 -55442005 + AluSx SINE Alu 1 300 -12 26 50 0 0 chr13 46431350 46431390 -55441779 + AT_rich Low_complexity Low_complexity 1 40 0 8041 204 32 34 chr13 46432294 46435142 -55438027 + L1MA4A LINE L1 1093 3936 -2912 5174 171 55 37 chr13 46435123 46436896 -55436273 + L1MA4A LINE L1 5175 6998 -7 * 317 301 20 52 chr13 46437070 46437223 -55435946 + MER77 LTR ERV1 66 213 -392 648 273 62 102 chr13 46437241 46437597 -55435572 + MER21B LTR ERV1 149 480 -383 1221 176 104 62 chr13 46437597 46438029 -55435140 + LTR7 LTR ERV1 1 450 0 648 273 62 102 chr13 46438029 46438184 -55434985 + MER21B LTR ERV1 480 640 -223 1600 234 51 3 chr13 46438294 46438645 -55434524 - MLT1A2 LTR MaLR 0 374 7 236 208 35 157 chr13 46438673 46438870 -55434299 - LTR28 LTR ERV1 0 1020 848 487 220 72 34 chr13 46438882 46439049 -55434120 - LTR1B LTR ERV1 -333 493 341 426 239 213 19 chr13 46439122 46439277 -55433892 - LTR1 LTR ERV1 -568 217 33 2810 174 36 6 chr13 46439283 46439851 -55433318 - HUERS-P2 LTR ERV1 0 3088 2467 * 3105 213 24 24 chr13 46439850 46440559 -55432610 - HUERS-P2 LTR ERV1 -1707 1381 673 465 230 7 72 chr13 46440576 46440715 -55432454 - HUERS-P2 LTR ERV1 -2957 131 2 719 247 115 52 chr13 46440909 46441349 -55431820 - LTR1B LTR ERV1 -328 498 49 349 298 69 0 chr13 46442345 46442476 -55430693 + MIR SINE MIR 95 234 -28 551 333 44 31 chr13 46442483 46442645 -55430524 - MIR SINE MIR -6 256 89 2138 181 67 19 chr13 46442645 46442714 -55430455 - LTR47A LTR ERVL 0 452 388 1981 14 0 0 chr13 46442714 46442936 -55430233 + AluYa5 SINE Alu 90 311 0 2138 181 67 19 chr13 46442936 46443297 -55429872 - LTR47A LTR ERVL -64 388 1 551 333 44 31 chr13 46443297 46443359 -55429810 - MIR SINE MIR -173 89 29 24 53 0 0 chr13 46445765 46445803 -55427366 + AT_rich Low_complexity Low_complexity 1 38 0 4730 156 27 1 chr13 46446009 46446816 -55426353 - Tigger1 DNA MER2_type 0 2418 1591 1617 168 30 20 chr13 46446820 46447124 -55426045 - Tigger1 DNA MER2_type -2111 307 1 3900 215 17 41 chr13 46447124 46447340 -55425829 + L1MC1 LINE L1 4338 4558 -1775 1496 223 67 9 chr13 46447340 46447685 -55425484 + MLT1A1 LTR MaLR 1 365 0 3900 215 17 41 chr13 46447685 46449161 -55424008 + L1MC1 LINE L1 4558 5983 -350 533 291 11 48 chr13 46449177 46449366 -55423803 + MSTD LTR MaLR 214 395 -1 729 300 20 12 chr13 46449378 46449625 -55423544 - MIR SINE MIR -3 259 11 1923 171 122 10 chr13 46450391 46450776 -55422393 - MSTA LTR MaLR 0 428 1 22 70 0 0 chr13 46450938 46450981 -55422188 + AT_rich Low_complexity Low_complexity 1 43 0 2837 184 31 20 chr13 46451619 46452169 -55421000 - MER21A LTR ERV1 0 931 376 1218 182 91 0 chr13 46452174 46452416 -55420753 - MER21A LTR ERV1 -667 264 1 27 0 0 0 chr13 46452635 46452662 -55420507 + AT_rich Low_complexity Low_complexity 1 27 0 496 138 0 0 chr13 46453186 46453266 -55419903 - MADE1 DNA Mariner 0 80 1 28 79 0 0 chr13 46453830 46453893 -55419276 + AT_rich Low_complexity Low_complexity 1 63 0 278 358 9 9 chr13 46453922 46454031 -55419138 - L2 LINE L2 0 3313 3205 619 304 80 18 chr13 46454032 46454416 -55418753 - MLT1F1 LTR MaLR -59 508 1 250 292 10 62 chr13 46454437 46454533 -55418636 - L2 LINE L2 -559 2755 2665 342 156 42 21 chr13 46454607 46454703 -55418466 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 1342 309 50 45 chr13 46454715 46455388 -55417781 + L1M4b LINE L1 100 776 -6083 * 1885 268 42 3 chr13 46455383 46456026 -55417143 + L1M4b LINE L1 1679 2346 -4613 789 245 52 32 chr13 46456069 46456318 -55416851 + MLT2B1 LTR ERVL 1 254 -266 1608 163 78 51 chr13 46456581 46456955 -55416214 + LTR10A LTR ERV1 165 548 -61 667 264 6 0 chr13 46456978 46457141 -55416028 + MLT2B1 LTR ERVL 309 472 -48 17185 195 30 9 chr13 46457168 46460418 -55412751 + ERVL-B1 LTR ERVL 863 4252 -1512 3241 188 77 3 chr13 46460415 46461080 -55412089 + ERVL-B1 LTR ERVL 5044 5757 -7 * 1128 247 118 20 chr13 46461080 46461436 -55411733 + MLT2B1 LTR ERVL 1 391 -129 699 274 59 5 chr13 46462045 46462249 -55410920 - MER58A DNA MER1_type -8 216 2 249 269 15 0 chr13 46463116 46463183 -55409986 + CT-rich Low_complexity Low_complexity 2 69 0 595 206 23 8 chr13 46463620 46463751 -55409418 + MLT1A2 LTR MaLR 242 374 0 1382 284 40 13 chr13 46463907 46464358 -55408811 - MLT1C LTR MaLR -4 463 1 440 319 8 0 chr13 46464390 46464509 -55408660 - MIR SINE MIR -106 156 37 24 32 0 0 chr13 46465042 46465073 -55408096 + AT_rich Low_complexity Low_complexity 1 31 0 268 275 43 14 chr13 46465140 46465209 -55407960 + L2 LINE L2 3200 3270 -43 1138 321 133 20 chr13 46465495 46466178 -55406991 + L2 LINE L2 2425 3179 -134 224 30 30 0 chr13 46466186 46466219 -55406950 + (TA)n Simple_repeat Simple_repeat 1 34 0 1700 168 3 20 chr13 46466219 46466511 -55406658 - AluJo SINE Alu -23 289 3 325 312 194 15 chr13 46466810 46467150 -55406019 + MLT1L LTR MaLR 23 423 -192 25 0 0 0 chr13 46467513 46467538 -55405631 + AT_rich Low_complexity Low_complexity 1 25 0 470 302 98 29 chr13 46468854 46469217 -55403952 + L1MEd LINE L1 789 1177 -4952 525 356 42 26 chr13 46469229 46469614 -55403555 - ERVL LTR ERVL -4623 1141 751 2294 73 3 0 chr13 46469628 46469928 -55403241 - AluY SINE Alu -10 301 1 23 46 6 0 chr13 46470263 46470348 -55402821 + AT_rich Low_complexity Low_complexity 1 44 0 626 236 25 19 chr13 46470933 46471094 -55402075 - LTR41 LTR ERVL -611 162 1 30 0 0 0 chr13 46471104 46471134 -55402035 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr13 46471387 46471430 -55401739 + AT_rich Low_complexity Low_complexity 1 43 0 452 254 129 5 chr13 46473190 46473414 -55399755 - MER69 DNA AcHobo -338 2188 1937 38 39 0 0 chr13 46474049 46474101 -55399068 + AT_rich Low_complexity Low_complexity 1 52 0 1526 167 14 48 chr13 46474157 46474478 -55398691 - AluSx SINE Alu 0 311 1 503 331 155 21 chr13 46475092 46475648 -55397521 - L2 LINE L2 0 3313 2683 460 318 86 67 chr13 46475726 46476260 -55396909 - L2 LINE L2 -273 3040 2443 1823 166 36 116 chr13 46477124 46477683 -55395486 - MER67D LTR ERV1 0 514 1 184 346 192 0 chr13 46479591 46479695 -55393474 - L2 LINE L2 0 3313 3190 21 0 0 0 chr13 46480321 46480342 -55392827 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 46480515 46480544 -55392625 + AT_rich Low_complexity Low_complexity 1 29 0 2511 53 0 0 chr13 46481895 46482196 -55390973 - AluY SINE Alu -10 301 1 1607 185 92 0 chr13 46482750 46483064 -55390105 + MER2 DNA MER2_type 2 344 0 2442 65 0 0 chr13 46483908 46484217 -55388952 + AluY SINE Alu 3 311 0 24 0 0 0 chr13 46484340 46484364 -55388805 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 46485371 46485399 -55387770 + AT_rich Low_complexity Low_complexity 1 28 0 46 33 0 0 chr13 46485510 46485570 -55387599 + AT_rich Low_complexity Low_complexity 1 60 0 5572 142 4 5 chr13 46486207 46487127 -55386042 - L1P LINE L1 -1088 5058 4140 4880 99 10 0 chr13 46487123 46487799 -55385370 + L1PA10 LINE L1 5443 6125 -43 * 26 93 0 0 chr13 46488790 46488865 -55384304 + AT_rich Low_complexity Low_complexity 1 75 0 546 304 128 50 chr13 46489871 46490243 -55382926 + L2 LINE L2 2631 3026 -287 639 234 0 0 chr13 46490596 46490724 -55382445 + FLAM_A SINE Alu 1 128 -5 423 310 105 48 chr13 46491078 46491913 -55381256 + HAL1 LINE L1 818 1700 -807 770 124 0 0 chr13 46492880 46492993 -55380176 - AluSg/x SINE Alu -7 302 190 23 92 0 0 chr13 46552737 46552802 -55320367 + AT_rich Low_complexity Low_complexity 1 65 0 31 44 0 0 chr13 46553389 46553434 -55319735 + AT_rich Low_complexity Low_complexity 1 45 0 31 0 0 0 chr13 46553966 46553997 -55319172 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 46564244 46564266 -55308903 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 46572722 46572753 -55300416 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 46572775 46572797 -55300372 + AT_rich Low_complexity Low_complexity 1 22 0 2247 93 0 3 chr13 46574346 46574636 -55298533 + AluSx SINE Alu 11 299 -13 23 33 0 0 chr13 46574789 46574819 -55298350 + AT_rich Low_complexity Low_complexity 1 30 0 203 315 0 31 chr13 46575281 46575411 -55297758 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 * 290 299 6 17 chr13 46575320 46575497 -55297672 + (TA)n Simple_repeat Simple_repeat 2 176 0 197 159 23 0 chr13 46575501 46575545 -55297624 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 1056 186 31 0 chr13 46576351 46576545 -55296624 + MER41-int LTR ERV1 2096 2295 -3651 6104 141 60 16 chr13 46576837 46577947 -55295222 - HUERS-P1 LTR ERV1 -2996 3267 2109 23 54 0 0 chr13 46581125 46581162 -55292007 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 46583112 46583135 -55290034 + AT_rich Low_complexity Low_complexity 1 23 0 316 179 26 0 chr13 46583934 46584012 -55289157 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 2129 165 0 5 chr13 46584012 46584381 -55288788 + L1PB1 LINE L1 5782 6148 -3 21 0 0 0 chr13 46584381 46584402 -55288767 + AT_rich Low_complexity Low_complexity 1 21 0 353 380 58 29 chr13 46584405 46584784 -55288385 - HERVL LTR ERVL -3182 2472 2083 710 126 8 0 chr13 46584951 46585070 -55288099 - AluSg/x SINE Alu -17 295 176 22 35 0 0 chr13 46585544 46585573 -55287596 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 46585940 46585962 -55287207 + AT_rich Low_complexity Low_complexity 1 22 0 1008 207 7 33 chr13 46586040 46586311 -55286858 + L1MA9 LINE L1 2881 3144 -3002 4666 186 47 23 chr13 46586418 46587982 -55285187 + L1MA9 LINE L1 4709 6310 -2 1913 166 0 3 chr13 46588021 46588329 -55284840 + AluSx SINE Alu 3 309 -3 589 370 43 111 chr13 46588353 46588797 -55284372 - L2 LINE L2 -1944 1370 986 8926 191 13 24 chr13 46588797 46591415 -55281754 + L1PA13 LINE L1 3527 6163 0 589 370 43 111 chr13 46591415 46591649 -55281520 - L2 LINE L2 -2328 986 738 22 0 0 0 chr13 46591842 46591864 -55281305 + AT_rich Low_complexity Low_complexity 1 22 0 249 301 165 23 chr13 46592629 46592762 -55280407 + MER5A DNA MER1_type 38 189 0 260 109 0 36 chr13 46593886 46593941 -55279228 + (TATG)n Simple_repeat Simple_repeat 2 54 0 1819 236 0 8 chr13 46594088 46594465 -55278704 - MER52A LTR ERV1 0 1755 1382 204 235 26 26 chr13 46594607 46594722 -55278447 + (TTA)n Simple_repeat Simple_repeat 1 115 0 1727 157 7 0 chr13 46594882 46595162 -55278007 - AluSx SINE Alu -13 299 18 411 269 81 35 chr13 46595232 46595492 -55277677 - L1ME LINE L1 -320 5801 5530 367 218 141 0 chr13 46595503 46595581 -55277588 + 5S rRNA rRNA 2 90 -31 30 45 0 0 chr13 46595909 46595953 -55277216 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr13 46596076 46596100 -55277069 + AT_rich Low_complexity Low_complexity 1 24 0 682 289 12 28 chr13 46596916 46597305 -55275864 - MLT1D LTR MaLR -4 501 35 760 309 30 6 chr13 46597573 46597910 -55275259 - L1ME3A LINE L1 -229 5941 5597 1638 273 92 57 chr13 46597910 46599420 -55273749 + Zaphod DNA AcHobo 955 2517 -1514 882 147 31 0 chr13 46599408 46599571 -55273598 + MER73 LTR ERVL 8 175 -469 * 332 336 9 0 chr13 46599874 46599984 -55273185 + MLT1G LTR MaLR 10 120 -470 826 231 89 10 chr13 46599986 46600189 -55272980 + MER58A DNA MER1_type 6 224 0 1505 262 87 22 chr13 46600190 46600640 -55272529 + MLT1G LTR MaLR 112 590 0 634 289 39 35 chr13 46600809 46601065 -55272104 - MIR SINE MIR -1 261 5 21 36 0 0 chr13 46601543 46601571 -55271598 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 46605544 46605565 -55267604 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr13 46605905 46605958 -55267211 + AT_rich Low_complexity Low_complexity 1 53 0 206 383 0 21 chr13 46608432 46608526 -55264643 + MIR SINE MIR 19 110 -98 6724 190 27 5 chr13 46608761 46609426 -55263743 + L1PA15-16 LINE L1 9 664 -6185 426 39 0 0 chr13 46609426 46609478 -55263691 + (TG)n Simple_repeat Simple_repeat 2 53 0 6724 190 27 5 chr13 46609478 46610085 -55263084 + L1PA15-16 LINE L1 664 1256 -5593 204 364 110 13 chr13 46610815 46610969 -55262200 - L2 LINE L2 -2814 500 332 2106 119 3 0 chr13 46611017 46611310 -55261859 + AluSg SINE Alu 10 303 -7 367 223 7 122 chr13 46611546 46611685 -55261484 - L2 LINE L2 0 3313 3191 2767 192 58 5 chr13 46611790 46612538 -55260631 + L1P3 LINE L1 1 670 -5205 25 31 0 0 chr13 46616775 46616807 -55256362 + AT_rich Low_complexity Low_complexity 1 32 0 581 263 54 11 chr13 46616945 46617131 -55256038 + L1PB4 LINE L1 5963 6156 0 1892 155 30 0 chr13 46617139 46617443 -55255726 - MLT1A1 LTR MaLR -52 313 1 213 300 14 0 chr13 46617463 46617533 -55255636 - MIR SINE MIR -121 141 71 2685 35 0 0 chr13 46617554 46617865 -55255304 + AluY SINE Alu 1 311 0 22 35 0 0 chr13 46618030 46618059 -55255110 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr13 46620703 46620736 -55252433 + AT_rich Low_complexity Low_complexity 1 33 0 985 129 15 69 chr13 46621545 46621747 -55251422 - MSTA LTR MaLR -237 191 1 526 272 8 0 chr13 46621747 46621872 -55251297 - MER2 DNA MER2_type -219 126 1 26 30 0 0 chr13 46622018 46622051 -55251118 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr13 46622094 46622132 -55251037 + AT_rich Low_complexity Low_complexity 1 38 0 1594 218 80 49 chr13 46622276 46622766 -55250403 + MLT1D LTR MaLR 1 505 0 6333 30 4 0 chr13 46623793 46624636 -55248533 - L1PA4 LINE L1 -135 6020 5175 588 304 5 16 chr13 46624807 46624991 -55248178 - L1MC/D LINE L1 -2181 5627 5446 421 332 75 35 chr13 46626022 46626423 -55246746 + L1M4c LINE L1 1036 1554 -4932 205 182 0 0 chr13 46626481 46626525 -55246644 + A-rich Low_complexity Low_complexity 1 44 0 285 255 83 47 chr13 46626532 46626876 -55246293 - L1MDa LINE L1 -3761 2814 2423 1746 167 0 75 chr13 46627180 46627535 -55245634 - AluJo SINE Alu 0 332 3 26 50 0 0 chr13 46628215 46628255 -55244914 + AT_rich Low_complexity Low_complexity 1 40 0 376 233 19 0 chr13 46628686 46628789 -55244380 - L1MC3 LINE L1 -1 7784 7680 6300 121 17 13 chr13 46628790 46629739 -55243430 + HSMAR1 DNA Mariner 2 954 -333 226 213 13 67 chr13 46630285 46630360 -55242809 - MIR SINE MIR -128 134 64 33 56 0 0 chr13 46631162 46631216 -55241953 + AT_rich Low_complexity Low_complexity 1 54 0 1851 188 5 11 chr13 46631335 46631702 -55241467 - MLT1A1 LTR MaLR 0 365 1 459 0 0 0 chr13 46631703 46631754 -55241415 + (TA)n Simple_repeat Simple_repeat 1 51 0 304 124 57 40 chr13 46631783 46631960 -55241209 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 0 0 0 chr13 46632590 46632616 -55240553 + AT_rich Low_complexity Low_complexity 1 26 0 219 146 0 0 chr13 46632687 46632728 -55240441 + (TG)n Simple_repeat Simple_repeat 1 41 0 6335 167 172 57 chr13 46633650 46635224 -55237945 + MER52A LTR ERV1 1 1755 0 237 235 29 0 chr13 46635738 46635806 -55237363 + MER116 DNA Mariner 3 72 -8 1337 290 60 28 chr13 46635808 46636528 -55236641 - L1ME3A LINE L1 -127 6043 5301 2970 200 53 113 chr13 46636626 46637585 -55235584 + MER21A LTR ERV1 1 902 -29 628 275 65 36 chr13 46637608 46637992 -55235177 + L1ME3A LINE L1 5662 6057 -113 2380 90 0 0 chr13 46638123 46638434 -55234735 - AluY SINE Alu 0 311 1 23 0 0 0 chr13 46639024 46639047 -55234122 + AT_rich Low_complexity Low_complexity 1 23 0 205 104 0 42 chr13 46639976 46640024 -55233145 + (TATTG)n Simple_repeat Simple_repeat 1 46 0 422 266 18 0 chr13 46640556 46640669 -55232500 + L1MCa LINE L1 16 130 -6296 1694 186 9 9 chr13 46640669 46641002 -55232167 + L1MC3 LINE L1 5432 5764 -2021 346 171 13 13 chr13 46640998 46641074 -55232095 - L1MC3 LINE L1 -1868 5917 5842 * 5499 216 66 23 chr13 46641086 46642457 -55230712 + L1MC3 LINE L1 6240 6356 -3 21 36 0 0 chr13 46642550 46642578 -55230591 + AT_rich Low_complexity Low_complexity 1 28 0 344 322 17 11 chr13 46642614 46642791 -55230378 + (TA)n Simple_repeat Simple_repeat 2 179 0 490 246 41 96 chr13 46642949 46643169 -55230000 - MIR SINE MIR -49 213 6 343 305 96 46 chr13 46643249 46643488 -55229681 + HAL1 LINE L1 1402 1652 -855 27 0 0 0 chr13 46643741 46643768 -55229401 + AT_rich Low_complexity Low_complexity 1 27 0 33 85 0 0 chr13 46644885 46644967 -55228202 + AT_rich Low_complexity Low_complexity 1 82 0 21 0 0 0 chr13 46645000 46645021 -55228148 + AT_rich Low_complexity Low_complexity 1 21 0 4897 178 17 21 chr13 46645044 46646593 -55226576 - L1PB4 LINE L1 -8 6148 4608 1040 219 14 0 chr13 46646588 46646849 -55226320 + L1 LINE L1 3933 4197 -1949 * 236 246 31 0 chr13 46646842 46646907 -55226262 + L1P LINE L1 4151 4217 -1929 * 1756 226 2 31 chr13 46647091 46647538 -55225631 + L1 LINE L1 4166 4599 -1547 25 0 0 0 chr13 46648949 46648974 -55224195 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr13 46649282 46649310 -55223859 + (TG)n Simple_repeat Simple_repeat 2 29 0 3613 147 41 24 chr13 46649318 46650019 -55223150 - L1MA4 LINE L1 -5 6295 5583 1496 196 48 6 chr13 46650242 46650579 -55222590 + L1MC2 LINE L1 5984 6334 -10 421 246 102 0 chr13 46651865 46651983 -55221186 - MLT1H LTR MaLR -1 548 419 271 269 43 61 chr13 46652077 46652297 -55220872 - L1MC5 LINE L1 -391 7417 7249 234 0 0 0 chr13 46652665 46652691 -55220478 + (A)n Simple_repeat Simple_repeat 1 26 0 773 277 18 5 chr13 46652709 46652929 -55220240 - MER58A DNA MER1_type -1 223 1 6519 152 29 12 chr13 46653943 46655153 -55218016 + Tigger3b DNA MER2_type 1 1231 0 220 365 131 0 chr13 46655723 46655868 -55217301 + MIR SINE MIR 43 206 -56 395 345 156 12 chr13 46655991 46656402 -55216767 - L1M4 LINE L1 -2704 3442 2973 291 193 0 63 chr13 46659882 46660002 -55213167 + MER20 DNA MER1_type 22 219 0 349 148 235 12 chr13 46660249 46660330 -55212839 - MER5B DNA MER1_type -53 125 27 336 156 16 16 chr13 46660458 46660522 -55212647 + MLT1L LTR MaLR 550 613 -2 198 0 0 0 chr13 46660645 46660667 -55212502 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2613 131 17 62 chr13 46660687 46661326 -55211843 + MER4D LTR ERV1 1 872 0 1746 178 138 10 chr13 46661388 46661771 -55211398 + MSTB1 LTR MaLR 1 432 0 36 77 0 0 chr13 46662362 46662440 -55210729 + AT_rich Low_complexity Low_complexity 1 78 0 272 352 64 53 chr13 46662514 46663043 -55210126 - L2 LINE L2 -927 2387 1853 21 43 0 0 chr13 46663723 46663746 -55209423 + AT_rich Low_complexity Low_complexity 1 23 0 1279 137 156 48 chr13 46664668 46664938 -55208231 - AluSg1 SINE Alu 0 309 11 516 103 13 0 chr13 46665232 46665310 -55207859 + MADE1 DNA Mariner 1 79 -1 239 245 21 21 chr13 46665404 46665498 -55207671 + (TAA)n Simple_repeat Simple_repeat 3 96 0 288 53 0 0 chr13 46666293 46666331 -55206838 + (TG)n Simple_repeat Simple_repeat 1 38 0 1153 264 124 57 chr13 46667428 46667733 -55205436 - L1ME1 LINE L1 0 6961 6678 2154 79 0 21 chr13 46667733 46668023 -55205146 + AluY SINE Alu 1 284 -27 1153 264 124 57 chr13 46668023 46668365 -55204804 - L1ME1 LINE L1 -283 6678 6360 1767 146 7 0 chr13 46668365 46668645 -55204524 - AluSx SINE Alu -3 309 28 1153 264 124 57 chr13 46668645 46668780 -55204389 - L1ME1 LINE L1 -601 6360 6236 1555 198 7 10 chr13 46668780 46669088 -55204081 - AluJb SINE Alu -5 307 1 1153 264 124 57 chr13 46669088 46669150 -55204019 - L1ME1 LINE L1 -725 6236 6058 255 248 50 0 chr13 46669176 46669297 -55203872 + (TA)n Simple_repeat Simple_repeat 2 128 0 965 270 114 15 chr13 46669299 46669843 -55203326 - L1ME1 LINE L1 -919 6022 5425 676 288 55 35 chr13 46669880 46670279 -55202890 - L1ME1 LINE L1 -5945 478 72 21 89 0 0 chr13 46670321 46670377 -55202792 + AT_rich Low_complexity Low_complexity 1 56 0 246 228 9 26 chr13 46670631 46670745 -55202424 + CT-rich Low_complexity Low_complexity 2 113 0 24 32 0 0 chr13 46670870 46670901 -55202268 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 46671370 46671394 -55201775 + AT_rich Low_complexity Low_complexity 1 24 0 183 314 20 0 chr13 46671829 46671880 -55201289 - MIR SINE MIR -101 107 56 2090 93 25 0 chr13 46672969 46673247 -55199922 + AluSg1 SINE Alu 10 294 -15 186 255 85 0 chr13 46674954 46675001 -55198168 - MIR SINE MIR -2 260 210 29 60 0 0 chr13 46675364 46675414 -55197755 + AT_rich Low_complexity Low_complexity 1 50 0 638 316 64 19 chr13 46676687 46676953 -55196216 - L2 LINE L2 -522 2792 2515 706 288 151 16 chr13 46677134 46677565 -55195604 + L1ME1 LINE L1 5401 5889 -275 473 284 68 0 chr13 46677592 46677740 -55195429 + L1ME1 LINE L1 6000 6157 -9 2270 125 13 21 chr13 46678428 46678804 -55194365 - THE1C LTR MaLR -2 373 1 1160 114 31 0 chr13 46682980 46683173 -55189996 - L1MA2 LINE L1 -1 6303 6105 192 321 0 0 chr13 46683173 46683226 -55189943 - MIR SINE MIR -143 119 67 250 256 24 24 chr13 46683235 46683317 -55189852 + MIR SINE MIR 82 163 -99 217 203 16 16 chr13 46685019 46685083 -55188086 + (TA)n Simple_repeat Simple_repeat 1 64 0 30 0 0 0 chr13 46685858 46685888 -55187281 + AT_rich Low_complexity Low_complexity 1 30 0 620 165 25 13 chr13 46686255 46686413 -55186756 + GA-rich Low_complexity Low_complexity 1 160 0 1906 179 51 0 chr13 46686473 46686864 -55186305 - L1 LINE L1 -1054 5092 4682 * 3729 209 25 5 chr13 46686856 46687713 -55185456 + L1 LINE L1 3824 4697 -1449 1667 221 20 87 chr13 46687857 46688433 -55184736 - MER44D DNA MER2_type -11 594 1 354 162 0 0 chr13 46689032 46689106 -55184063 + CT-rich Low_complexity Low_complexity 3 76 0 350 232 0 0 chr13 46689214 46689296 -55183873 + L1MA2 LINE L1 6223 6304 0 278 272 9 88 chr13 46690316 46690430 -55182739 - L2 LINE L2 -6 3307 3203 5845 108 12 6 chr13 46690592 46691648 -55181521 + L1PB1 LINE L1 5084 6144 -7 407 322 16 44 chr13 46691783 46691966 -55181203 + MLT1H LTR MaLR 130 307 -242 201 121 0 0 chr13 46692310 46692343 -55180826 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2907 183 43 43 chr13 46692637 46693308 -55179861 + LTR51 LTR ERV1 1 671 0 866 238 19 14 chr13 46694804 46695014 -55178155 + MER58A DNA MER1_type 12 222 -2 25 0 0 0 chr13 46695817 46695842 -55177327 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 46695935 46695956 -55177213 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 46696002 46696024 -55177145 + AT_rich Low_complexity Low_complexity 1 22 0 1629 178 52 25 chr13 46696288 46696653 -55176516 - THE1C LTR MaLR 0 375 1 1353 328 91 41 chr13 46696666 46697772 -55175397 + ERVL LTR ERVL 2943 4063 -1591 1238 341 37 45 chr13 46697890 46698387 -55174782 + ERVL LTR ERVL 4267 4757 -1007 2243 103 7 0 chr13 46698387 46698677 -55174492 - AluSp SINE Alu -21 292 1 1238 341 37 45 chr13 46698677 46698939 -55174230 + ERVL LTR ERVL 4757 5020 -744 367 263 40 0 chr13 46699767 46699866 -55173303 + MER58C DNA MER1_type 109 211 -4 277 316 130 17 chr13 46699996 46700173 -55172996 + LTR50 LTR ERVL 36 232 -563 261 0 0 0 chr13 46700174 46700203 -55172966 + (T)n Simple_repeat Simple_repeat 1 29 0 2167 111 30 43 chr13 46701143 46701512 -55171657 - THE1B LTR MaLR 0 364 1 930 170 0 18 chr13 46701749 46701914 -55171255 + FRAM SINE Alu 1 161 -15 1697 144 3 35 chr13 46702098 46702411 -55170758 + AluSx SINE Alu 5 307 -5 28 29 0 0 chr13 46703021 46703056 -55170113 + AT_rich Low_complexity Low_complexity 1 35 0 268 270 50 10 chr13 46703211 46703311 -55169858 - L1ME4a LINE L1 -26 6095 5992 661 180 6 81 chr13 46705563 46705724 -55167445 - MER52A LTR ERV1 -422 1333 1185 1321 117 5 5 chr13 46705874 46706071 -55167098 + HSMAR1 DNA Mariner 1090 1286 -1 1972 200 48 17 chr13 46706078 46706537 -55166632 - L1MC3 LINE L1 -113 7672 7200 412 248 16 0 chr13 46706544 46706673 -55166496 - L1MA7 LINE L1 -11 6280 6150 * 423 239 0 11 chr13 46706672 46706760 -55166409 - L1MC3 LINE L1 -576 7209 7123 265 200 0 0 chr13 46706750 46706800 -55166369 - L1MA4 LINE L1 -617 5566 5517 * 4095 152 11 26 chr13 46706796 46707535 -55165634 + L1MA4 LINE L1 5552 6279 -21 1178 206 61 4 chr13 46707556 46707833 -55165336 - L1MC3 LINE L1 -648 7137 6845 187 324 42 0 chr13 46707918 46707989 -55165180 - MIR SINE MIR -167 95 22 237 313 12 0 chr13 46709724 46709804 -55163365 - HAL1 LINE L1 -2273 234 154 22 35 0 0 chr13 46709826 46709855 -55163314 + AT_rich Low_complexity Low_complexity 1 29 0 1705 209 67 61 chr13 46709908 46710419 -55162750 - MER67D LTR ERV1 0 514 1 23 33 0 0 chr13 46711330 46711360 -55161809 + AT_rich Low_complexity Low_complexity 1 30 0 189 121 0 0 chr13 46711762 46711795 -55161374 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 418 343 61 12 chr13 46712433 46712678 -55160491 - L2 LINE L2 -74 3239 2983 284 216 0 0 chr13 46713052 46713103 -55160066 - MLT1A1 LTR MaLR 0 365 315 240 57 29 0 chr13 46713117 46713152 -55160017 + L1P LINE L1 4271 4306 -1840 3559 218 52 19 chr13 46713181 46714711 -55158458 + L1MA4 LINE L1 4429 6016 -115 1993 196 83 18 chr13 46714340 46714846 -55158323 + L1PB4 LINE L1 5618 6156 0 * 1892 155 30 0 chr13 46714854 46715158 -55158011 - MLT1A1 LTR MaLR -52 313 1 213 300 14 0 chr13 46715178 46715248 -55157921 - MIR SINE MIR -121 141 71 2309 71 13 13 chr13 46715269 46715580 -55157589 + AluY SINE Alu 1 311 0 22 35 0 0 chr13 46715745 46715774 -55157395 + AT_rich Low_complexity Low_complexity 1 29 0 5865 136 6 0 chr13 46716261 46717146 -55156023 - THE1A-int LTR MaLR -690 890 1 2419 84 38 3 chr13 46717146 46717489 -55155680 - THE1A LTR MaLR 0 355 1 429 285 58 76 chr13 46717508 46717901 -55155268 + ERVL LTR ERVL 1014 1399 -4365 332 338 73 46 chr13 46718057 46718534 -55154635 - L1MEd LINE L1 -5267 852 363 3575 183 50 8 chr13 46718999 46719743 -55153426 + L1 LINE L1 3393 4167 -1979 * 4100 171 44 10 chr13 46719716 46720487 -55152682 + L1PA16 LINE L1 5364 6160 -6 2200 140 25 8 chr13 46720529 46720894 -55152275 - THE1C LTR MaLR 0 375 5 9282 139 34 36 chr13 46720897 46722461 -55150708 - THE1C-int LTR MaLR -20 1560 1 2574 117 3 8 chr13 46722461 46722838 -55150331 - THE1C LTR MaLR 0 375 1 1377 181 24 7 chr13 46722838 46723136 -55150033 + L1 LINE L1 4198 4500 -1646 31 0 0 0 chr13 46723540 46723571 -55149598 + AT_rich Low_complexity Low_complexity 1 31 0 208 167 0 21 chr13 46723883 46723931 -55149238 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1266 318 35 20 chr13 46723931 46724482 -55148687 + L1MEc LINE L1 108 666 -5730 1437 136 29 0 chr13 46724552 46724795 -55148374 - L1PA15 LINE L1 -3 6162 5913 2683 164 7 31 chr13 46724803 46724929 -55148240 - L1PA15 LINE L1 -522 5643 5515 1843 137 0 0 chr13 46724929 46725191 -55147978 + AluSq SINE Alu 38 299 -14 2683 164 7 31 chr13 46725191 46725950 -55147219 - L1PA15 LINE L1 -650 5515 4782 * 4119 263 32 43 chr13 46725933 46727221 -55145948 - L1PA13 LINE L1 -5362 1425 4 557 280 76 12 chr13 46727225 46727475 -55145694 + L1MEc LINE L1 669 934 -5462 1106 302 115 22 chr13 46727522 46728520 -55144649 + L1MEc LINE L1 1033 2123 -4273 575 319 78 21 chr13 46728669 46729001 -55144168 + LTR16B LTR ERVL 114 464 0 235 283 58 36 chr13 46729238 46729376 -55143793 - MLT1L LTR MaLR -312 303 163 23 54 0 0 chr13 46729671 46729708 -55143461 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr13 46729748 46729779 -55143390 + AT_rich Low_complexity Low_complexity 1 31 0 1882 137 4 0 chr13 46730170 46730448 -55142721 + AluSp SINE Alu 1 279 -34 27 0 0 0 chr13 46731724 46731751 -55141418 + AT_rich Low_complexity Low_complexity 1 27 0 1900 183 49 8 chr13 46733009 46733375 -55139794 + MLT1B LTR MaLR 10 390 0 22 0 0 0 chr13 46733497 46733519 -55139650 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr13 46733768 46733802 -55139367 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 46733817 46733848 -55139321 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 46733957 46733980 -55139189 + AT_rich Low_complexity Low_complexity 1 23 0 467 171 125 16 chr13 46734033 46734165 -55139004 - L1P LINE L1 -816 5330 5180 234 150 0 0 chr13 46734361 46734401 -55138768 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1385 205 18 18 chr13 46735405 46735732 -55137437 - L1 LINE L1 -1941 4599 4273 592 214 0 0 chr13 46735732 46735848 -55137321 + L1PA16 LINE L1 6048 6164 -2 464 325 99 28 chr13 46736321 46736953 -55136216 + L1ME LINE L1 574 1150 -4932 291 254 83 47 chr13 46737062 46737406 -55135763 - L1MDa LINE L1 -3761 2814 2423 441 0 0 0 chr13 46737710 46737759 -55135410 + (T)n Simple_repeat Simple_repeat 1 49 0 28 0 0 0 chr13 46737770 46737798 -55135371 + GC_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr13 46738858 46738887 -55134282 + (T)n Simple_repeat Simple_repeat 1 29 0 2002 106 11 0 chr13 46738931 46739215 -55133954 - AluSc SINE Alu -6 303 17 705 281 142 9 chr13 46739288 46739612 -55133557 + LTR50 LTR ERVL 387 753 -42 494 194 0 0 chr13 46741285 46741383 -55131786 + L1MC3 LINE L1 6430 6527 -1258 * 976 177 76 101 chr13 46741381 46741748 -55131421 + L1MC3 LINE L1 6738 7095 -690 234 284 53 11 chr13 46741750 46741845 -55131324 + MLT1F1 LTR MaLR 35 133 -434 2297 227 34 7 chr13 46741851 46742419 -55130750 + L1MC3 LINE L1 7202 7784 -1 532 67 22 0 chr13 46742510 46742600 -55130569 + L1PA13 LINE L1 6067 6158 -5 197 358 33 8 chr13 46742694 46742814 -55130355 + MIR SINE MIR 94 216 -46 391 333 149 44 chr13 46743235 46743984 -55129185 + L2 LINE L2 2285 3117 -196 1655 191 25 11 chr13 46744239 46744605 -55128564 - L1MB1 LINE L1 -1 6167 5797 1155 179 69 0 chr13 46744606 46744824 -55128345 + AluJo SINE Alu 1 233 -79 906 146 0 0 chr13 46744828 46744965 -55128204 - AluSq/x SINE Alu -175 137 1 876 275 220 28 chr13 46744965 46745474 -55127695 - L1ME1 LINE L1 -274 5892 5289 22 35 0 0 chr13 46745544 46745573 -55127596 + AT_rich Low_complexity Low_complexity 1 29 0 911 264 29 12 chr13 46745629 46745973 -55127196 - L1ME1 LINE L1 -1085 5061 4712 802 244 25 30 chr13 46746482 46746636 -55126533 + MER58A DNA MER1_type 10 164 -2256 1731 129 170 16 chr13 46746636 46747007 -55126162 + MSTA LTR MaLR 1 428 0 802 244 25 30 chr13 46747007 46747053 -55126116 + MER58A DNA MER1_type 164 209 -15 23 78 0 0 chr13 46748120 46748171 -55124998 + AT_rich Low_complexity Low_complexity 1 51 0 2156 126 0 0 chr13 46748178 46748479 -55124690 + AluSc SINE Alu 1 301 -8 386 184 37 18 chr13 46748932 46749041 -55124128 + LTR41 LTR ERVL 657 767 -6 388 369 44 26 chr13 46749363 46749702 -55123467 + ERVL LTR ERVL 353 697 -5067 275 348 9 0 chr13 46749746 46749858 -55123311 + ERVL LTR ERVL 813 925 -4839 2456 104 8 8 chr13 46749926 46750281 -55122888 - THE1A LTR MaLR 0 355 1 4976 119 3 4 chr13 46750281 46751006 -55122163 - THE1A-int LTR MaLR 0 1580 857 1703 192 7 3 chr13 46751109 46751417 -55121752 - MER52A LTR ERV1 -544 1211 903 1119 224 178 2 chr13 46751413 46751850 -55121319 - MER52A LTR ERV1 -1143 612 1 * 25 0 0 0 chr13 46751855 46751880 -55121289 + AT_rich Low_complexity Low_complexity 1 25 0 690 235 56 0 chr13 46752140 46752319 -55120850 + MER5A DNA MER1_type 1 189 0 245 217 33 43 chr13 46752871 46752963 -55120206 + CT-rich Low_complexity Low_complexity 1 91 0 271 246 15 0 chr13 46753054 46753119 -55120050 - L1ME3A LINE L1 -112 6058 5993 217 171 40 40 chr13 46753448 46753524 -55119645 + (TTTAA)n Simple_repeat Simple_repeat 4 79 0 2634 159 42 35 chr13 46754011 46754588 -55118581 + L1 LINE L1 4048 4628 -1518 592 253 65 41 chr13 46754600 46754893 -55118276 - L1M4 LINE L1 -2771 3375 3076 337 333 99 29 chr13 46755376 46755791 -55117378 - L1M4 LINE L1 -3392 2754 2311 33 43 0 0 chr13 46755831 46755878 -55117291 + AT_rich Low_complexity Low_complexity 1 47 0 240 266 37 9 chr13 46757628 46757737 -55115432 + L1MCa LINE L1 2367 2478 -3948 2056 106 7 3 chr13 46757760 46758061 -55115108 + AluY SINE Alu 3 304 -7 1013 154 0 0 chr13 46758061 46758210 -55114959 + AluSg/x SINE Alu 134 307 0 226 0 0 0 chr13 46758210 46758235 -55114934 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 1508 209 136 3 chr13 46758268 46758650 -55114519 - Tigger2a DNA MER2_type -1 433 1 914 189 0 0 chr13 46758780 46758970 -55114199 + L1MA4 LINE L1 6099 6288 -12 1724 253 48 12 chr13 46758986 46759666 -55113503 + L1MCa LINE L1 2611 3315 -3111 4500 253 27 16 chr13 46759676 46761788 -55111381 + L1PA13 LINE L1 1 2634 -4163 927 280 21 9 chr13 46761794 46762130 -55111039 + L1PA13 LINE L1 3424 3763 -3034 * 5131 227 13 3 chr13 46762108 46763264 -55109905 + L1PA13 LINE L1 4413 5580 -1217 282 368 90 0 chr13 46763447 46763659 -55109510 + HAL1 LINE L1 125 355 -2152 446 244 145 72 chr13 46763898 46764284 -55108885 + HAL1 LINE L1 714 1127 -1380 285 188 25 12 chr13 46764346 46764426 -55108743 + (TA)n Simple_repeat Simple_repeat 2 82 0 452 282 44 117 chr13 46764435 46764733 -55108436 - MER93b LTR ERV1 0 373 127 31 42 0 42 chr13 46764733 46764804 -55108365 + AT_rich Low_complexity Low_complexity 1 68 0 228 233 33 33 chr13 46764982 46765072 -55108097 + L1MC4 LINE L1 6614 6703 -1339 257 189 44 61 chr13 46765215 46765395 -55107774 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 998 286 60 16 chr13 46765452 46765885 -55107284 + HAL1 LINE L1 1327 1778 -729 390 236 90 21 chr13 46765915 46766059 -55107110 + LTR16A LTR ERVL 20 173 -277 1380 228 19 0 chr13 46766259 46766571 -55106598 - L1MA4 LINE L1 -80 6220 5903 31 58 0 0 chr13 46766571 46766623 -55106546 + AT_rich Low_complexity Low_complexity 1 52 0 282 73 0 0 chr13 46767494 46767535 -55105634 + (TG)n Simple_repeat Simple_repeat 1 41 0 420 20 0 0 chr13 46767925 46767974 -55105195 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 32 26 0 0 chr13 46768713 46768752 -55104417 + AT_rich Low_complexity Low_complexity 1 39 0 1283 181 19 0 chr13 46769175 46769441 -55103728 + L1MA6 LINE L1 6030 6300 0 23 33 0 0 chr13 46770090 46770120 -55103049 + AT_rich Low_complexity Low_complexity 1 30 0 1608 267 33 41 chr13 46770634 46771274 -55101895 - L1ME1 LINE L1 -116 6050 5416 * 4088 181 24 46 chr13 46771271 46772154 -55101015 + L1MA3 LINE L1 5443 6305 0 30 59 0 0 chr13 46772183 46772234 -55100935 + AT_rich Low_complexity Low_complexity 1 51 0 31 26 0 0 chr13 46772523 46772561 -55100608 + AT_rich Low_complexity Low_complexity 1 38 0 1386 136 4 0 chr13 46772954 46773182 -55099987 + L1MA3 LINE L1 6077 6305 0 1850 134 13 20 chr13 46773276 46773574 -55099595 + AluSc SINE Alu 4 299 -10 22 35 0 0 chr13 46774306 46774335 -55098834 + AT_rich Low_complexity Low_complexity 1 29 0 227 200 17 17 chr13 46774495 46774555 -55098614 + L1MEc LINE L1 96 155 -6241 231 229 160 15 chr13 46774651 46774782 -55098387 + LTR50 LTR ERVL 504 653 -142 230 313 16 0 chr13 46775784 46775848 -55097321 + MIR SINE MIR 111 175 -87 1123 103 88 57 chr13 46776262 46776456 -55096713 - THE1B LTR MaLR -164 200 1 11539 98 2 10 chr13 46776461 46778046 -55095123 - THE1B-int LTR MaLR -6 1574 2 1941 125 68 34 chr13 46778047 46778399 -55094770 - THE1B LTR MaLR 0 364 1 1866 107 3 54 chr13 46778696 46779016 -55094153 - AluSp SINE Alu 0 305 1 234 0 0 0 chr13 46779641 46779667 -55093502 + (TA)n Simple_repeat Simple_repeat 2 27 0 29 60 0 0 chr13 46780358 46780408 -55092761 + AT_rich Low_complexity Low_complexity 1 50 0 1785 174 0 0 chr13 46780864 46781146 -55092023 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr13 46781147 46781168 -55092001 + AT_rich Low_complexity Low_complexity 1 21 0 198 275 101 0 chr13 46781679 46781748 -55091421 + L3b LINE CR1 1261 1336 -247 21 0 0 0 chr13 46783158 46783179 -55089990 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr13 46783705 46783735 -55089434 + AT_rich Low_complexity Low_complexity 1 30 0 190 56 56 0 chr13 46783988 46784024 -55089145 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr13 46784043 46784066 -55089103 + AT_rich Low_complexity Low_complexity 1 23 0 225 279 0 25 chr13 46784206 46784239 -55088930 + (CATATA)n Simple_repeat Simple_repeat 2 34 -44 1919 186 30 0 chr13 46784239 46784577 -55088592 - MER7A DNA MER2_type 0 346 1 225 279 0 25 chr13 46784577 46784622 -55088547 + (CATATA)n Simple_repeat Simple_repeat 34 78 0 294 233 23 23 chr13 46785103 46785189 -55087980 + CT-rich Low_complexity Low_complexity 5 90 0 324 344 44 16 chr13 46785262 46785445 -55087724 - MIR SINE MIR -56 206 19 257 247 39 0 chr13 46786308 46786385 -55086784 - L1MEc LINE L1 -6202 194 115 227 191 16 0 chr13 46787948 46788011 -55085158 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chr13 46788156 46788177 -55084992 + AT_rich Low_complexity Low_complexity 1 21 0 1452 165 59 11 chr13 46788580 46788872 -55084297 + AluSx SINE Alu 14 312 0 39 38 0 0 chr13 46789161 46789214 -55083955 + AT_rich Low_complexity Low_complexity 1 53 0 1357 244 83 31 chr13 46790009 46790489 -55082680 + MLT1D LTR MaLR 1 505 0 414 289 114 43 chr13 46790597 46791481 -55081688 - L1ME3A LINE L1 -337 5767 4816 21 0 0 0 chr13 46791514 46791535 -55081634 + AT_rich Low_complexity Low_complexity 1 21 0 531 267 180 20 chr13 46791551 46792000 -55081169 - L1ME3A LINE L1 -4822 1260 740 391 301 94 87 chr13 46792051 46792415 -55080754 - L1ME LINE L1 -5296 774 414 2312 195 19 37 chr13 46792415 46792896 -55080273 - MER70A LTR ERVL 0 472 1 391 301 94 87 chr13 46792896 46792950 -55080219 - L1ME LINE L1 -5656 414 362 1814 168 49 0 chr13 46792950 46793278 -55079891 - MER2 DNA MER2_type 0 344 1 391 301 94 87 chr13 46793278 46793409 -55079760 - L1ME LINE L1 -5708 362 253 701 356 25 48 chr13 46793989 46794710 -55078459 - L2 LINE L2 0 3313 2548 1995 157 5 41 chr13 46794820 46795208 -55077961 + THE1C LTR MaLR 2 375 0 9473 134 24 30 chr13 46795208 46796798 -55076371 + THE1C-int LTR MaLR 1 1580 0 1870 134 57 33 chr13 46796798 46797164 -55076005 + THE1C LTR MaLR 1 375 0 826 189 0 0 chr13 46797476 46797624 -55075545 + AluSg/x SINE Alu 139 286 -24 432 289 51 19 chr13 46798081 46798237 -55074932 + MIR SINE MIR 35 195 -67 207 0 0 0 chr13 46798884 46798907 -55074262 + (TG)n Simple_repeat Simple_repeat 2 24 0 396 111 0 0 chr13 46798909 46798972 -55074197 + (GA)n Simple_repeat Simple_repeat 1 63 0 1894 267 94 31 chr13 46799617 46800639 -55072530 + L1ME3 LINE L1 1308 2393 -4147 366 240 29 0 chr13 46800682 46800786 -55072383 + L1ME3 LINE L1 5384 5490 -1050 26 30 0 0 chr13 46800863 46800896 -55072273 + AT_rich Low_complexity Low_complexity 1 33 0 230 371 37 45 chr13 46801177 46801422 -55071747 + L2 LINE L2 2722 2964 -350 193 246 159 0 chr13 46801628 46801697 -55071472 + L2 LINE L2 3183 3262 -10 275 255 0 21 chr13 46802417 46802511 -55070658 + (TA)n Simple_repeat Simple_repeat 2 93 0 840 317 38 30 chr13 46802755 46803285 -55069884 + L1ME3 LINE L1 5648 6181 -375 1044 269 22 12 chr13 46803290 46803613 -55069556 + L1ME3 LINE L1 6231 6556 0 23 33 0 0 chr13 46803825 46803855 -55069314 + AT_rich Low_complexity Low_complexity 1 30 0 26 64 0 0 chr13 46804234 46804281 -55068888 + AT_rich Low_complexity Low_complexity 1 47 0 2478 104 6 3 chr13 46804451 46804805 -55068364 - THE1A LTR MaLR 0 355 1 229 159 23 0 chr13 46804805 46804849 -55068320 - THE1A-int LTR MaLR 0 1580 1536 10464 113 2 1 chr13 46804953 46806421 -55066748 - THE1A-int LTR MaLR -110 1470 1 2508 104 6 6 chr13 46806421 46806776 -55066393 - THE1A LTR MaLR 0 355 1 1435 133 0 0 chr13 46806781 46806999 -55066170 - L1MA3 LINE L1 -32 6273 6056 453 310 123 48 chr13 46807223 46807745 -55065424 + L2 LINE L2 2754 3302 -11 51 51 0 0 chr13 46807842 46807921 -55065248 + AT_rich Low_complexity Low_complexity 1 79 0 291 53 71 53 chr13 46807926 46808039 -55065130 + (TATAA)n Simple_repeat Simple_repeat 2 116 0 40 49 0 0 chr13 46808039 46808100 -55065069 + AT_rich Low_complexity Low_complexity 1 61 0 201 135 67 0 chr13 46808107 46808196 -55064973 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 2296 77 0 3 chr13 46809398 46809695 -55063474 - AluY SINE Alu -12 299 4 547 358 70 19 chr13 46811374 46811802 -55061367 + HERVL LTR ERVL 3073 3522 -2132 769 297 140 38 chr13 46812031 46812452 -55060717 - LTR16B LTR ERVL 0 464 1 1074 249 73 4 chr13 46813115 46813388 -55059781 - LTR16C LTR ERVL -2 489 198 1219 220 55 8 chr13 46813631 46813969 -55059200 + L1MB4 LINE L1 5811 6164 -16 1598 111 0 29 chr13 46813989 46814197 -55058972 + AluSg/x SINE Alu 76 278 -34 209 56 0 28 chr13 46814197 46814233 -55058936 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1598 111 0 29 chr13 46814233 46814267 -55058902 + AluSg/x SINE Alu 278 311 -1 21 95 0 0 chr13 46814412 46814475 -55058694 + AT_rich Low_complexity Low_complexity 1 63 0 284 296 12 2 chr13 46814599 46814771 -55058398 + L1ME LINE L1 5628 5800 -321 314 308 108 0 chr13 46815625 46815755 -55057414 - L1MCa LINE L1 -5126 1300 1157 917 141 0 0 chr13 46816169 46816304 -55056865 - FLAM_C SINE Alu -7 136 2 468 330 56 55 chr13 46817278 46818033 -55055136 - HERVL LTR ERVL -1269 4385 3595 1494 249 58 65 chr13 46818311 46818970 -55054199 + MLT1E1 LTR MaLR 1 654 0 466 307 105 50 chr13 46820876 46821477 -55051692 + L1MDa LINE L1 1468 2142 -4440 730 78 17 0 chr13 46821477 46821592 -55051577 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 1034 168 50 138 chr13 46821642 46821940 -55051229 + L1MA4A LINE L1 1240 1511 -5054 711 250 46 31 chr13 46821951 46822275 -55050894 + L1MA4A LINE L1 3007 3335 -4230 12576 228 45 16 chr13 46822287 46824311 -55048858 - L1PB3 LINE L1 -6 6864 4900 2109 92 0 0 chr13 46824311 46824653 -55048516 - AluY SINE Alu 0 342 1 12576 228 45 16 chr13 46824653 46830198 -55042971 - L1PB3 LINE L1 -1970 4900 8 12344 220 23 14 chr13 46830200 46833571 -55039598 + L1MA4A LINE L1 3317 6720 -845 365 185 0 49 chr13 46833568 46833649 -55039520 + L1MA4A LINE L1 7298 7374 -348 * 1017 164 5 43 chr13 46833659 46833867 -55039302 + L1PB1 LINE L1 1 200 -6663 * 2336 126 148 45 chr13 46833841 46834334 -55038835 + L1PB1 LINE L1 599 1142 -5721 9396 165 41 3 chr13 46834354 46836346 -55036823 + L1PB1 LINE L1 1311 3437 -3425 1973 128 13 26 chr13 46836346 46836652 -55036517 - AluSx SINE Alu -10 302 1 9396 165 41 3 chr13 46836652 46837408 -55035761 + L1PB1 LINE L1 3437 4163 -2699 3053 205 18 3 chr13 46837413 46838086 -55035083 + L1PB1 LINE L1 4379 5061 -1801 4427 187 39 5 chr13 46838092 46838162 -55035007 + L1PB1 LINE L1 5341 5407 -1460 207 0 0 0 chr13 46838162 46838185 -55034984 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 4427 187 39 5 chr13 46838185 46838944 -55034225 + L1PB1 LINE L1 5407 6236 -631 1847 134 0 4 chr13 46838944 46839219 -55033950 + AluSg SINE Alu 37 310 0 4427 187 39 5 chr13 46839219 46839754 -55033415 + L1PB1 LINE L1 6236 6751 -116 530 155 0 21 chr13 46840177 46840274 -55032895 + L1PB1 LINE L1 6772 6866 -1 937 225 0 22 chr13 46840274 46840496 -55032673 + L1MA4A LINE L1 5944 6160 -143 1558 223 31 8 chr13 46840507 46840898 -55032271 + L1MA4 LINE L1 5896 6295 -5 22 0 0 0 chr13 46840898 46840920 -55032249 + AT_rich Low_complexity Low_complexity 1 22 0 439 285 55 35 chr13 46840967 46841412 -55031757 + L1MEc LINE L1 2183 2600 -3615 1964 161 40 3 chr13 46841743 46842066 -55031103 + LTR28 LTR ERV1 1 335 -685 457 280 109 25 chr13 46842067 46842306 -55030863 + LTR27 LTR ERV1 374 632 -4 621 239 55 35 chr13 46842324 46842525 -55030644 - MLT1B LTR MaLR -175 215 11 799 237 51 70 chr13 46842545 46842950 -55030219 - MLT1A1 LTR MaLR -13 352 3 197 327 36 45 chr13 46843025 46843135 -55030034 - L2 LINE L2 -1330 1984 1876 21 0 0 0 chr13 46843916 46843937 -55029232 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 46844678 46844701 -55028468 + AT_rich Low_complexity Low_complexity 1 23 0 1935 139 0 3 chr13 46844766 46845054 -55028115 + AluSx SINE Alu 1 287 -25 201 176 0 0 chr13 46845070 46845104 -55028065 + A-rich Low_complexity Low_complexity 1 34 0 560 257 42 61 chr13 46845843 46846057 -55027112 + MER97b DNA MER1_type? 1 210 -843 1641 277 73 36 chr13 46846062 46846859 -55026310 - L1ME2 LINE L1 -2 6162 5337 1318 196 59 62 chr13 46847742 46848130 -55025039 + MLT1B LTR MaLR 4 390 0 1617 174 0 23 chr13 46848563 46848867 -55024302 - AluJo SINE Alu -15 297 1 21 36 0 0 chr13 46849191 46849219 -55023950 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 46849753 46849782 -55023387 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr13 46850532 46850585 -55022584 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr13 46851686 46851717 -55021452 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 46851976 46851997 -55021172 + AT_rich Low_complexity Low_complexity 1 21 0 311 298 1 9 chr13 46851999 46852125 -55021044 + L1ME3 LINE L1 5259 5360 -786 369 253 79 47 chr13 46852188 46852378 -55020791 - L1ME3A LINE L1 -223 5947 5752 1126 281 54 38 chr13 46852379 46852770 -55020399 + LTR40a LTR ERVL 118 514 -5 432 344 58 19 chr13 46852796 46853314 -55019855 + L1ME3 LINE L1 5353 5890 -272 809 313 77 90 chr13 46853423 46854243 -55018926 - L2 LINE L2 -884 2430 1622 4209 261 43 53 chr13 46854270 46855653 -55017516 + L1MB7 LINE L1 22 1418 -5264 1852 149 49 32 chr13 46855653 46856022 -55017147 + THE1C LTR MaLR 1 375 0 4209 261 43 53 chr13 46856022 46857246 -55015923 + L1MB7 LINE L1 1418 2653 -4029 428 95 0 0 chr13 46857246 46857309 -55015860 + L1PA5 LINE L1 6084 6146 -8 4209 261 43 53 chr13 46857309 46857580 -55015589 + L1MB7 LINE L1 2653 2925 -3757 2275 152 39 12 chr13 46857580 46857995 -55015174 - MSTA LTR MaLR 0 428 3 4209 261 43 53 chr13 46857995 46861377 -55011792 + L1MB7 LINE L1 2925 6239 -443 1361 153 51 97 chr13 46861377 46861768 -55011401 - THE1C LTR MaLR 0 375 3 9365 148 41 10 chr13 46861770 46863299 -55009870 - THE1C-int LTR MaLR 0 1580 4 1838 118 60 79 chr13 46863301 46863682 -55009487 - THE1C LTR MaLR 0 375 2 608 218 14 0 chr13 46863687 46863829 -55009340 + L1MB7 LINE L1 6239 6382 -300 826 207 6 0 chr13 46863831 46864000 -55009169 + L1MB7 LINE L1 6488 6657 -25 1777 312 65 42 chr13 46864145 46864317 -55008852 - L2 LINE L2 -1819 1495 1329 754 191 0 0 chr13 46864317 46864443 -55008726 + FLAM_C SINE Alu 2 127 -6 1777 312 65 42 chr13 46864443 46865162 -55008007 - L2 LINE L2 -1985 1329 583 320 184 39 0 chr13 46866258 46866361 -55006808 + (TA)n Simple_repeat Simple_repeat 2 108 0 1568 241 55 36 chr13 46866490 46866964 -55006205 + MLT1D LTR MaLR 23 505 0 21 36 0 0 chr13 46868185 46868213 -55004956 + AT_rich Low_complexity Low_complexity 1 28 0 1954 149 0 3 chr13 46868981 46869282 -55003887 + AluSx SINE Alu 1 300 -12 278 367 50 25 chr13 46869664 46869863 -55003306 + MIR SINE MIR 21 224 -38 248 363 82 7 chr13 46871059 46871205 -55001964 - L2 LINE L2 -316 2997 2841 306 367 109 12 chr13 46871369 46871617 -55001552 + HAL1b LINE L1 337 608 -740 5511 121 21 0 chr13 46872986 46873093 -55000076 - L1PA15 LINE L1 -3 6162 6059 2147 164 48 29 chr13 46873093 46873135 -55000034 + MSTA LTR MaLR 1 41 -387 1922 122 17 3 chr13 46873135 46873429 -54999740 - AluSx SINE Alu -14 298 1 2147 164 48 29 chr13 46873429 46873806 -54999363 + MSTA LTR MaLR 41 428 0 5511 121 21 0 chr13 46873806 46874886 -54998283 - L1PA15 LINE L1 -106 6059 4968 226 277 48 24 chr13 46874991 46875074 -54998095 + MLT1I LTR MaLR 39 123 -286 24 32 0 0 chr13 46875416 46875447 -54997722 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 46875928 46875954 -54997215 + AT_rich Low_complexity Low_complexity 1 26 0 289 0 0 47 chr13 46876318 46876361 -54996808 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 36 0 0 chr13 46876399 46876427 -54996742 + AT_rich Low_complexity Low_complexity 1 28 0 668 344 119 25 chr13 46876967 46877598 -54995571 + L2 LINE L2 2015 2704 -610 22 0 0 0 chr13 46878675 46878697 -54994472 + AT_rich Low_complexity Low_complexity 1 22 0 198 118 0 0 chr13 46879000 46879034 -54994135 + (TG)n Simple_repeat Simple_repeat 1 34 0 1627 155 6 50 chr13 46879440 46879757 -54993412 + AluJb SINE Alu 1 303 -9 199 102 20 20 chr13 46879757 46879806 -54993363 + (TA)n Simple_repeat Simple_repeat 1 49 0 268 297 0 0 chr13 46880611 46880685 -54992484 - L1P LINE L1 -1995 4151 4078 21 0 0 0 chr13 46881564 46881585 -54991584 + AT_rich Low_complexity Low_complexity 1 21 0 373 134 15 0 chr13 46882190 46882257 -54990912 + L1PB3 LINE L1 6080 6147 -7 219 42 0 62 chr13 46882269 46882317 -54990852 + (TA)n Simple_repeat Simple_repeat 2 46 0 333 223 0 43 chr13 46882547 46882641 -54990528 - L1MC4 LINE L1 -1337 6705 6616 215 238 0 0 chr13 46882643 46882685 -54990484 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1539 319 85 14 chr13 46883127 46883638 -54989531 - HERVL40 LTR ERVL -2335 3195 2619 192 40 0 0 chr13 46883638 46883663 -54989506 + (CAG)n Simple_repeat Simple_repeat 3 27 0 1539 319 85 14 chr13 46883663 46883859 -54989310 - HERVL40 LTR ERVL -2911 2619 2438 1294 268 14 14 chr13 46884311 46884666 -54988503 - MLT1A1 LTR MaLR 0 365 11 1387 184 34 38 chr13 46885667 46885960 -54987209 + AluJo SINE Alu 3 294 -18 1527 176 10 17 chr13 46886044 46886334 -54986835 - AluJo SINE Alu -22 290 3 24 0 0 0 chr13 46886391 46886415 -54986754 + AT_rich Low_complexity Low_complexity 1 24 0 313 291 82 50 chr13 46886975 46887195 -54985974 - L2 LINE L2 0 3313 3087 1248 231 68 86 chr13 46887312 46887826 -54985343 - MLT1D LTR MaLR 0 505 1 386 242 0 8 chr13 46888469 46888589 -54984580 + CT-rich Low_complexity Low_complexity 4 122 0 624 311 77 5 chr13 46888718 46888940 -54984229 - MIR SINE MIR -21 241 4 312 27 0 0 chr13 46889112 46889149 -54984020 + (TG)n Simple_repeat Simple_repeat 2 38 0 186 333 53 0 chr13 46889156 46889231 -54983938 - MIR SINE MIR -67 141 63 862 261 0 19 chr13 46889518 46889725 -54983444 - MER58A DNA MER1_type 0 224 22 236 346 40 0 chr13 46889935 46890036 -54983133 - MIR SINE MIR -150 112 8 22 0 0 0 chr13 46890164 46890186 -54982983 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chr13 46890828 46890881 -54982288 + AT_rich Low_complexity Low_complexity 1 53 0 1526 155 76 51 chr13 46892357 46892712 -54980457 + THE1B LTR MaLR 1 364 0 10957 101 26 1 chr13 46892714 46894254 -54978915 + THE1B-int LTR MaLR 3 1580 0 1807 144 19 45 chr13 46894254 46894628 -54978541 + THE1B LTR MaLR 1 364 0 200 260 0 0 chr13 46895294 46895344 -54977825 + GA-rich Low_complexity Low_complexity 2 51 0 348 228 15 29 chr13 46895743 46895879 -54977290 + CT-rich Low_complexity Low_complexity 3 136 0 482 161 21 0 chr13 46895996 46896089 -54977080 + L1MB1 LINE L1 6069 6163 -5 291 28 0 0 chr13 46896089 46896125 -54977044 + (GA)n Simple_repeat Simple_repeat 1 36 0 4419 44 2 0 chr13 46896213 46896761 -54976408 - L1PA4 LINE L1 0 6155 5607 7264 39 5 1 chr13 46896761 46897896 -54975273 + L1PA4 LINE L1 4464 5603 -552 1501 172 41 17 chr13 46897919 46898209 -54974960 + THE1C LTR MaLR 79 375 0 284 259 0 0 chr13 46898209 46898267 -54974902 + L2 LINE L2 3210 3267 -5 223 303 30 0 chr13 46899012 46899078 -54974091 + L2 LINE L2 3246 3313 0 25 51 0 0 chr13 46899226 46899265 -54973904 + AT_rich Low_complexity Low_complexity 1 39 0 21 82 0 0 chr13 46899311 46899360 -54973809 + AT_rich Low_complexity Low_complexity 1 49 0 183 80 0 0 chr13 46899544 46899569 -54973600 + (TG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr13 46899682 46899715 -54973454 + AT_rich Low_complexity Low_complexity 1 33 0 474 326 113 45 chr13 46900098 46900558 -54972611 + MLT1H LTR MaLR 5 537 -12 259 219 0 27 chr13 46900562 46900635 -54972534 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 65 0 0 chr13 46900983 46901029 -54972140 + AT_rich Low_complexity Low_complexity 1 46 0 1451 193 23 33 chr13 46901041 46901342 -54971827 + AluJo SINE Alu 1 298 -14 21 89 0 0 chr13 46902431 46902487 -54970682 + AT_rich Low_complexity Low_complexity 1 56 0 3866 139 6 14 chr13 46902612 46903252 -54969917 - MER41B LTR ERV1 0 635 1 380 337 166 34 chr13 46903266 46903681 -54969488 + HAL1 LINE L1 1415 1884 -623 680 243 7 51 chr13 46903845 46904148 -54969021 - MLT1A1 LTR MaLR 0 609 11 367 276 0 48 chr13 46904159 46904264 -54968905 - MER5A DNA MER1_type -86 103 4 23 33 0 0 chr13 46904411 46904441 -54968728 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 46904707 46904733 -54968436 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 46904806 46904841 -54968328 + AT_rich Low_complexity Low_complexity 1 35 0 450 0 0 0 chr13 46905028 46905078 -54968091 + (TG)n Simple_repeat Simple_repeat 1 50 0 1852 117 3 18 chr13 46905080 46905363 -54967806 - AluSx SINE Alu -33 279 1 391 0 0 0 chr13 46905368 46905414 -54967755 + MADE1 DNA Mariner 35 80 0 343 320 27 40 chr13 46906030 46906180 -54966989 + ERVL LTR ERVL 1471 1618 -4146 1189 323 100 41 chr13 46906533 46906937 -54966232 - L1ME LINE L1 -673 5491 5112 2192 97 0 3 chr13 46906937 46907236 -54965933 + AluSq SINE Alu 1 298 -15 1189 323 100 41 chr13 46907236 46907541 -54965628 - L1ME LINE L1 -1052 5112 4826 210 37 0 0 chr13 46907541 46907568 -54965601 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1189 323 100 41 chr13 46907568 46908184 -54964985 - L1ME LINE L1 -1338 4826 4086 23 33 0 0 chr13 46908222 46908252 -54964917 + AT_rich Low_complexity Low_complexity 1 30 0 208 188 0 21 chr13 46908451 46908499 -54964670 + T-rich Low_complexity Low_complexity 2 48 0 312 208 131 19 chr13 46908835 46908983 -54964186 + L1M4 LINE L1 1029 1165 -5040 345 233 7 13 chr13 46909317 46909467 -54963702 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 31 88 0 0 chr13 46909533 46909613 -54963556 + AT_rich Low_complexity Low_complexity 1 80 0 379 250 69 7 chr13 46909683 46909827 -54963342 + L1M4 LINE L1 4522 4674 -1472 417 330 14 0 chr13 46909839 46910054 -54963115 + L1M4 LINE L1 4826 5043 -1103 781 94 0 8 chr13 46911603 46911692 -54961477 - L1PA4 LINE L1 -1884 4262 4175 9433 31 0 1 chr13 46911692 46913584 -54959585 + L1PA4 LINE L1 4260 6150 -5 781 94 0 8 chr13 46913584 46913625 -54959544 - L1P LINE L1 -1971 4175 4135 341 401 31 5 chr13 46914331 46914523 -54958646 - MIR SINE MIR -64 198 2 215 218 20 59 chr13 46914825 46914926 -54958243 + A-rich Low_complexity Low_complexity 5 101 0 2560 181 69 4 chr13 46915046 46915566 -54957603 + L1MC2 LINE L1 5319 5872 -472 615 125 16 8 chr13 46915566 46915694 -54957475 + (TA)n Simple_repeat Simple_repeat 1 129 0 1088 262 142 12 chr13 46915783 46916115 -54957054 + MER21B LTR ERV1 19 393 -470 4238 266 94 26 chr13 46916135 46916391 -54956778 + L1M4 LINE L1 2184 2421 -3794 2135 109 3 7 chr13 46916391 46916685 -54956484 - AluSc SINE Alu -14 295 3 4238 266 94 26 chr13 46916685 46917099 -54956070 + L1M4 LINE L1 2421 2805 -3410 825 56 0 0 chr13 46917099 46917206 -54955963 + (TAAAA)n Simple_repeat Simple_repeat 4 110 0 4238 266 94 26 chr13 46917206 46918512 -54954657 + L1M4 LINE L1 2805 4297 -1918 312 107 12 143 chr13 46918513 46918597 -54954572 + Tigger2 DNA MER2_type 1 73 -2645 * 2184 159 77 12 chr13 46918588 46919002 -54954167 + Tigger2 DNA MER2_type 2278 2718 0 1000 207 66 3 chr13 46919002 46919306 -54953863 + L1M4 LINE L1 4297 4619 -1596 672 219 38 19 chr13 46919312 46919472 -54953697 + MER70A LTR ERVL 1 163 -309 2190 248 28 8 chr13 46919475 46919946 -54953223 + MER70B LTR ERVL 99 578 0 2839 230 25 18 chr13 46919950 46920825 -54952344 + L1M4 LINE L1 4623 5510 -733 285 136 0 0 chr13 46921619 46921663 -54951506 - MLT2B2 LTR ERVL 0 515 472 27 0 0 0 chr13 46922587 46922614 -54950555 + AT_rich Low_complexity Low_complexity 1 27 0 1716 147 39 3 chr13 46923179 46923464 -54949705 + AluSx SINE Alu 12 306 -6 338 280 103 0 chr13 46923554 46923661 -54949508 - MER58A DNA MER1_type 0 118 1 589 263 88 9 chr13 46923923 46924151 -54949018 + LTR40c LTR ERVL 12 257 -208 303 269 0 0 chr13 46924165 46924243 -54948926 + LTR40a LTR ERVL 442 519 0 417 183 173 0 chr13 46924578 46924682 -54948487 + HERVL40 LTR ERVL 958 1079 -4451 783 277 14 14 chr13 46924988 46925208 -54947961 + HERVL40 LTR ERVL 3208 3427 -2103 2993 299 157 32 chr13 46925327 46925418 -54947751 + L2 LINE L2 1093 1171 -2142 291 28 0 0 chr13 46925418 46925454 -54947715 + (CA)n Simple_repeat Simple_repeat 2 37 0 2993 299 157 32 chr13 46925454 46927135 -54946034 + L2 LINE L2 1171 3081 -232 312 281 115 10 chr13 46927164 46927260 -54945909 + L2 LINE L2 3208 3313 0 2376 72 20 0 chr13 46927392 46927515 -54945654 + AluY SINE Alu 1 120 -191 228 35 0 0 chr13 46927515 46927544 -54945625 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2376 72 20 0 chr13 46927544 46927725 -54945444 + AluY SINE Alu 120 311 0 403 216 96 16 chr13 46928430 46928444 -54944725 - L1MA9 LINE L1 0 6312 6299 648 228 118 21 chr13 46928444 46928681 -54944488 - L1ME1 LINE L1 -9 6157 5898 2054 88 16 8 chr13 46928681 46929037 -54944132 + LTR7 LTR ERV1 1 448 -2 19083 101 27 20 chr13 46929039 46932004 -54941165 + HERVH LTR ERV1 1 2987 -4726 791 153 49 0 chr13 46931998 46932142 -54941027 + HERVH LTR ERV1 3140 3290 -4423 * 3494 95 4 6 chr13 46932132 46932635 -54940534 + HERVH LTR ERV1 3492 3993 -3720 4085 153 0 12 chr13 46932637 46933142 -54940027 + HERVH LTR ERV1 4488 4985 -2728 2590 49 0 3 chr13 46933142 46933447 -54939722 + AluY SINE Alu 3 306 -5 4085 153 0 12 chr13 46933447 46933608 -54939561 + HERVH LTR ERV1 4985 5146 -2567 1375 124 18 5 chr13 46933612 46933829 -54939340 + HERVH LTR ERV1 5600 5819 -1894 * 2298 108 48 13 chr13 46933827 46934206 -54938963 + HERVH LTR ERV1 7322 7713 0 2564 89 87 7 chr13 46934206 46934621 -54938548 + LTR7 LTR ERV1 1 448 -2 969 233 4 9 chr13 46934639 46934867 -54938302 - L1ME1 LINE L1 -272 5894 5668 317 259 34 19 chr13 46934861 46934995 -54938174 + L1ME LINE L1 5527 5663 -511 * 303 303 73 49 chr13 46934996 46935283 -54937886 + L1MC4a LINE L1 5611 5904 -1904 812 151 42 6 chr13 46937570 46937736 -54935433 - L1MA6 LINE L1 0 6300 6129 1649 159 10 10 chr13 46937736 46938031 -54935138 + L1MA6 LINE L1 5811 6105 -195 23 0 0 0 chr13 46938142 46938165 -54935004 + AT_rich Low_complexity Low_complexity 1 23 0 265 233 25 25 chr13 46938817 46938937 -54934232 + (TTAAA)n Simple_repeat Simple_repeat 2 121 0 4850 161 64 4 chr13 46939048 46940264 -54932905 - L1PA16 LINE L1 -3 6163 4880 21 107 0 0 chr13 46940368 46940452 -54932717 + AT_rich Low_complexity Low_complexity 1 84 0 22 56 0 0 chr13 46940506 46940542 -54932627 + AT_rich Low_complexity Low_complexity 1 36 0 30 45 0 0 chr13 46941013 46941057 -54932112 + AT_rich Low_complexity Low_complexity 1 44 0 261 0 0 0 chr13 46942559 46942588 -54930581 + (A)n Simple_repeat Simple_repeat 1 29 0 1148 261 78 23 chr13 46943797 46944533 -54928636 - L1MDa LINE L1 -3435 3105 2322 222 193 18 18 chr13 46944547 46944604 -54928565 + (TA)n Simple_repeat Simple_repeat 2 58 0 2148 278 72 27 chr13 46944623 46945060 -54928109 - L1ME1 LINE L1 -21 6145 5729 306 0 0 0 chr13 46945060 46945094 -54928075 + (TG)n Simple_repeat Simple_repeat 2 35 0 2148 278 72 27 chr13 46945094 46945687 -54927482 - L1ME1 LINE L1 -437 5729 5057 1383 221 31 0 chr13 46945687 46945976 -54927193 + AluJo SINE Alu 1 298 -14 2148 278 72 27 chr13 46945976 46946118 -54927051 - L1ME1 LINE L1 -1109 5057 4923 310 234 54 9 chr13 46946168 46946279 -54926890 - L1ME1 LINE L1 -3742 2404 2289 417 299 18 0 chr13 46946360 46946527 -54926642 - L1ME1 LINE L1 -3826 2320 2151 44 35 0 0 chr13 46946570 46946628 -54926541 + AT_rich Low_complexity Low_complexity 1 58 0 812 167 8 0 chr13 46946645 46946777 -54926392 - AluJb SINE Alu -171 141 9 24 0 0 0 chr13 46946779 46946803 -54926366 + AT_rich Low_complexity Low_complexity 1 24 0 439 314 10 15 chr13 46947006 46947255 -54925914 - L1MDa LINE L1 -4471 2069 1849 5401 79 101 1 chr13 46949088 46949838 -54923331 + LTR12 LTR ERV1 2 826 0 17702 108 16 8 chr13 46949838 46952427 -54920742 + HERV9 LTR ERV1 1 2610 -5789 307 276 10 0 chr13 46952433 46952531 -54920638 + LTR30 LTR ERV1 544 642 -80 2604 77 0 3 chr13 46952532 46952871 -54920298 + LTR12 LTR ERV1 377 714 0 1225 242 95 9 chr13 46953113 46953439 -54919730 + MLT1D LTR MaLR 152 505 0 3032 164 4 0 chr13 46953877 46954372 -54918797 + LOR1a LTR ERV1 1 497 0 1295 156 34 0 chr13 46956749 46956986 -54916183 + L1M3 LINE L1 5285 5529 -804 430 183 0 0 chr13 46956994 46957076 -54916093 + L1MC1 LINE L1 5946 6027 -306 969 176 16 6 chr13 46957077 46957259 -54915910 - L1PB4 LINE L1 -9 6147 5964 1782 151 26 6 chr13 46957260 46957571 -54915598 + L1MC1 LINE L1 6016 6332 -1 662 219 0 8 chr13 46957630 46957773 -54915396 + L1M3 LINE L1 5523 5664 -490 21 36 0 0 chr13 46957773 46957801 -54915368 + AT_rich Low_complexity Low_complexity 1 28 0 208 355 0 0 chr13 46957927 46957989 -54915180 + L2 LINE L2 3203 3264 -49 23 33 0 0 chr13 46958371 46958401 -54914768 + AT_rich Low_complexity Low_complexity 1 30 0 2139 114 3 0 chr13 46958829 46959126 -54914043 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 46961034 46961055 -54912114 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr13 46961488 46961529 -54911640 + AT_rich Low_complexity Low_complexity 1 41 0 319 214 0 0 chr13 46963059 46963115 -54910054 + L2 LINE L2 3184 3239 -33 243 386 55 35 chr13 46963252 46963397 -54909772 + L2 LINE L2 3116 3263 -9 969 306 47 20 chr13 46964648 46964701 -54908468 - LTR16B LTR ERVL -4 460 410 243 0 0 0 chr13 46964701 46964728 -54908441 + (CA)n Simple_repeat Simple_repeat 2 28 0 969 306 47 20 chr13 46964728 46965119 -54908050 - LTR16B LTR ERVL -54 410 4 1299 200 18 0 chr13 46965292 46965583 -54907586 + MER61C LTR ERV1 1 281 -153 311 208 0 0 chr13 46965580 46965633 -54907536 + MER61D LTR ERV1 423 475 -26 * 2368 153 44 2 chr13 46970140 46970551 -54902618 - MSTA LTR MaLR 0 428 1 7902 204 29 5 chr13 46970551 46972163 -54901006 - MSTA-int LTR MaLR 0 1651 1 2328 154 24 9 chr13 46972163 46972585 -54900584 - MSTA LTR MaLR 0 428 1 867 239 47 27 chr13 46972617 46972928 -54900241 - MLT1A2 LTR MaLR 0 374 1 273 285 93 89 chr13 46973307 46973553 -54899616 - L1MEd LINE L1 -5371 748 502 453 229 59 39 chr13 46973996 46974149 -54899020 + L1MC4a LINE L1 6385 6540 -1268 444 306 47 60 chr13 46974163 46974464 -54898705 + L1MC4 LINE L1 7366 7662 -380 2011 112 26 55 chr13 46974775 46975159 -54898010 - THE1C LTR MaLR 0 375 3 2454 66 0 7 chr13 46975542 46975846 -54897323 - AluY SINE Alu -7 304 3 308 295 53 62 chr13 46976032 46976276 -54896893 - MLT1G LTR MaLR -300 290 49 517 283 68 105 chr13 46976358 46976768 -54896401 + L2 LINE L2 1994 2388 -926 200 391 145 7 chr13 46976875 46977172 -54895997 + L2 LINE L2 2385 2722 -592 22 80 0 0 chr13 46977381 46977431 -54895738 + AT_rich Low_complexity Low_complexity 1 50 0 1414 289 59 23 chr13 46977517 46978752 -54894417 - L1ME1 LINE L1 -263 5903 4629 952 255 45 18 chr13 46978768 46979211 -54893958 - L1ME1 LINE L1 -1596 4550 4096 1301 75 3 252 chr13 46979211 46979572 -54893597 + LTR12 LTR ERV1 7 277 -437 271 271 8 68 chr13 46979572 46979705 -54893464 + LTR30 LTR ERV1 544 668 -54 472 123 0 0 chr13 46979705 46979770 -54893399 + LTR12 LTR ERV1 514 578 -136 476 307 26 13 chr13 46979770 46980001 -54893168 - L1ME1 LINE L1 -2035 4111 3878 257 261 0 0 chr13 46980497 46980562 -54892607 + L1 LINE L1 3942 4006 -2140 990 280 63 31 chr13 46980715 46981021 -54892148 + L1M4 LINE L1 4219 4552 -1594 818 171 116 166 chr13 46981021 46981443 -54891726 - MER57A LTR ERV1 0 403 3 990 280 63 31 chr13 46981443 46981689 -54891480 + L1M4 LINE L1 4552 4789 -1357 2255 169 23 30 chr13 46981689 46982009 -54891160 - MSTA LTR MaLR 0 428 110 1497 166 0 0 chr13 46982009 46982244 -54890925 + AluSx SINE Alu 2 236 -76 2255 169 23 30 chr13 46982244 46982354 -54890815 - MSTA LTR MaLR -318 110 1 2229 161 13 5 chr13 46982361 46982747 -54890422 - MSTA-int LTR MaLR -7 1644 1256 1120 157 15 0 chr13 46982758 46982956 -54890213 + L1 LINE L1 3977 4177 -1969 1580 229 27 0 chr13 46982956 46983284 -54889885 - MSTA-int LTR MaLR -392 1188 852 3484 137 67 11 chr13 46983284 46983644 -54889525 - L1PB1 LINE L1 -1 6150 5737 180 111 0 0 chr13 46983644 46983671 -54889498 + (TA)n Simple_repeat Simple_repeat 1 27 0 3484 137 67 11 chr13 46983671 46983951 -54889218 - L1PB1 LINE L1 -414 5737 5474 7012 196 24 2 chr13 46983951 46985636 -54887533 + L1PB1 LINE L1 3756 5480 -671 5138 196 4 4 chr13 46985634 46986561 -54886608 - MSTA-int LTR MaLR -724 927 1 * 1852 179 126 3 chr13 46986561 46986942 -54886227 - MSTA LTR MaLR 0 428 1 840 258 63 36 chr13 46986947 46987423 -54885746 + L1M4 LINE L1 4791 5279 -867 2235 61 41 0 chr13 46988290 46988583 -54884586 - AluY SINE Alu -6 305 1 1409 174 9 0 chr13 46988988 46989218 -54883951 - Tigger3(Golem) DNA MER2_type 0 3029 2798 852 236 6 11 chr13 46989219 46989397 -54883772 - MER21-int LTR ERV1 -1418 2773 2597 1285 328 123 33 chr13 46989405 46990308 -54882861 + L1PA15-16 LINE L1 241 1563 -5286 * 6961 259 83 22 chr13 46990294 46994004 -54879165 + L1PBb LINE L1 690 4645 -1558 325 113 0 65 chr13 46993976 46994038 -54879131 + L1M2 LINE L1 5795 5852 -505 * 225 241 23 23 chr13 46994038 46994125 -54879044 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 1740 195 33 6 chr13 46994125 46994489 -54878680 + L1PB4 LINE L1 5782 6155 -1 243 0 0 0 chr13 46994702 46994729 -54878440 + (TG)n Simple_repeat Simple_repeat 2 28 0 874 265 92 4 chr13 46994737 46994975 -54878194 + Tigger7 DNA MER2_type 9 267 -2220 463 227 0 21 chr13 46994973 46995070 -54878099 + Tigger7 DNA MER2_type 2389 2483 -4 * 24 32 0 0 chr13 46995353 46995384 -54877785 + AT_rich Low_complexity Low_complexity 1 31 0 1692 134 52 85 chr13 46995400 46995788 -54877381 - THE1C LTR MaLR 0 375 1 28 29 0 0 chr13 46996080 46996115 -54877054 + AT_rich Low_complexity Low_complexity 1 35 0 228 379 166 9 chr13 46996271 46996482 -54876687 - MIR SINE MIR -6 256 13 9373 189 22 11 chr13 46997736 47000365 -54872804 - L1PB2 LINE L1 -2 6206 3542 2008 132 0 0 chr13 47000365 47000669 -54872500 - AluSg SINE Alu 0 304 1 9373 189 22 11 chr13 47000669 47001087 -54872082 - L1PB2 LINE L1 -2666 3542 3130 5576 175 47 20 chr13 47001075 47001702 -54871467 - L1PB2 LINE L1 -4385 1819 1211 * 1852 169 0 0 chr13 47001702 47001997 -54871172 + AluSx SINE Alu 3 297 -15 5576 175 47 20 chr13 47001997 47002459 -54870710 - L1PB2 LINE L1 -4993 1211 763 234 91 0 0 chr13 47002459 47002492 -54870677 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5576 175 47 20 chr13 47002492 47003328 -54869841 - L1PB2 LINE L1 -5441 763 1 1159 221 43 25 chr13 47003405 47003794 -54869375 + AluJo SINE Alu 1 394 0 867 106 5 48 chr13 47003798 47003986 -54869183 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 22 35 0 0 chr13 47004040 47004069 -54869100 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr13 47004614 47004651 -54868518 + AT_rich Low_complexity Low_complexity 1 37 0 521 269 14 65 chr13 47005205 47005421 -54867748 + L1ME3 LINE L1 5947 6151 -11 31 44 0 0 chr13 47005422 47005467 -54867702 + AT_rich Low_complexity Low_complexity 1 45 0 22 70 0 0 chr13 47006173 47006216 -54866953 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr13 47006268 47006298 -54866871 + AT_rich Low_complexity Low_complexity 1 30 0 623 297 85 36 chr13 47006653 47007064 -54866105 + LTR68 LTR ERV1 7 437 -303 2297 234 30 11 chr13 47007224 47007787 -54865382 - MER67C LTR ERV1 -136 574 1 1957 116 25 0 chr13 47008220 47008523 -54864646 - AluSq SINE Alu 0 310 1 6292 151 22 38 chr13 47008868 47009339 -54863830 - Tigger3b DNA MER2_type -1797 1231 754 2145 99 3 3 chr13 47009339 47009632 -54863537 + AluSg SINE Alu 3 295 -15 6292 151 22 38 chr13 47009632 47010411 -54862758 - Tigger3b DNA MER2_type -2274 754 1 40 49 0 0 chr13 47011787 47011848 -54861321 + AT_rich Low_complexity Low_complexity 1 61 0 31 26 0 0 chr13 47013855 47013893 -54859276 + AT_rich Low_complexity Low_complexity 1 38 0 1965 163 0 0 chr13 47013894 47014195 -54858974 - AluSx SINE Alu -9 303 3 816 151 50 6 chr13 47014200 47014379 -54858790 - L1MA7 LINE L1 0 6291 6105 944 241 27 75 chr13 47015024 47015398 -54857771 + MLT1A1 LTR MaLR 10 365 0 454 310 35 18 chr13 47017080 47017251 -54855918 - MIR SINE MIR -25 237 64 255 31 0 0 chr13 47018692 47018724 -54854445 + (CA)n Simple_repeat Simple_repeat 2 33 0 6144 162 48 17 chr13 47018725 47019428 -54853741 + Tigger3b DNA MER2_type 2 758 -2270 2004 116 0 3 chr13 47019428 47019738 -54853431 - AluSx SINE Alu 0 309 1 6144 162 48 17 chr13 47019738 47020213 -54852956 + Tigger3b DNA MER2_type 758 1217 -14 225 103 51 0 chr13 47020710 47020749 -54852420 + Alu SINE Alu 256 296 -6 2371 156 40 33 chr13 47021046 47021647 -54851522 + pTR5 LTR ERV1 741 1345 -1093 4354 110 14 142 chr13 47021662 47022605 -54850564 + LTR12 LTR ERV1 5 826 0 1869 245 56 90 chr13 47022757 47024014 -54849155 + L1M4 LINE L1 515 1919 -4727 * 2561 208 54 16 chr13 47024013 47024713 -54848456 + L1MC2 LINE L1 5486 6247 -97 1947 148 7 0 chr13 47024724 47025027 -54848142 - AluSq SINE Alu -8 305 1 416 243 29 0 chr13 47025043 47025146 -54848023 + L1M4 LINE L1 1908 2013 -4633 2099 108 0 26 chr13 47025392 47025698 -54847471 + AluSq SINE Alu 1 298 -15 376 224 61 68 chr13 47025743 47026007 -54847162 + L1M4 LINE L1 2496 2757 -3889 600 236 179 0 chr13 47026019 47026265 -54846904 + L1M4 LINE L1 3243 3532 -3112 14588 180 42 10 chr13 47026300 47028016 -54845153 + L1M4 LINE L1 14 1849 -5716 408 20 0 0 chr13 47028016 47028065 -54845104 + (GA)n Simple_repeat Simple_repeat 1 49 0 14588 180 42 10 chr13 47028065 47029066 -54844103 + L1M4 LINE L1 1849 2817 -4748 1139 154 21 34 chr13 47029071 47029305 -54843864 - L1 LINE L1 -1833 4313 4083 565 134 0 19 chr13 47029339 47029463 -54843706 - L1PB4 LINE L1 -156 5995 5882 833 234 0 0 chr13 47029463 47029637 -54843532 + L1PB4 LINE L1 5978 6152 -4 250 286 13 0 chr13 47031034 47031111 -54842058 + L1M4 LINE L1 5048 5125 -2440 186 43 0 0 chr13 47032225 47032248 -54840921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1017 68 0 0 chr13 47032256 47032389 -54840780 - L1PA5 LINE L1 0 6154 6022 354 302 20 20 chr13 47032551 47032700 -54840469 + L1M4 LINE L1 6389 6537 -1028 339 309 37 0 chr13 47033210 47033346 -54839823 + L1M4 LINE L1 2633 2773 -3373 1579 258 19 14 chr13 47034683 47035102 -54838067 - MLT1D LTR MaLR 0 505 85 1752 206 15 41 chr13 47035104 47035497 -54837672 - MLT1B LTR MaLR -2 388 6 488 244 0 0 chr13 47035522 47035612 -54837557 - MLT1D LTR MaLR -415 90 1 26 64 0 0 chr13 47037476 47037523 -54835646 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr13 47038363 47038411 -54834758 + AT_rich Low_complexity Low_complexity 1 48 0 2588 198 32 38 chr13 47038802 47039430 -54833739 + L1MA10 LINE L1 5709 6332 -2 21 0 0 0 chr13 47039809 47039830 -54833339 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 47040493 47040523 -54832646 + AT_rich Low_complexity Low_complexity 1 30 0 1480 160 94 31 chr13 47040533 47040851 -54832318 + MER44D DNA MER2_type 1 608 -1 27 0 0 0 chr13 47040928 47040955 -54832214 + AT_rich Low_complexity Low_complexity 1 27 0 1890 161 118 23 chr13 47041143 47041534 -54831635 - MSTA LTR MaLR 0 428 1 7542 200 51 8 chr13 47041534 47043117 -54830052 - MSTA-int LTR MaLR 0 1651 1 1591 183 174 8 chr13 47043117 47043484 -54829685 - MSTA LTR MaLR 0 428 1 637 290 46 12 chr13 47043492 47043837 -54829332 + L1M4 LINE L1 2663 3019 -3127 23 33 0 0 chr13 47045352 47045382 -54827787 + AT_rich Low_complexity Low_complexity 1 30 0 441 264 121 22 chr13 47046398 47046629 -54826540 - L1M4 LINE L1 -933 5213 4960 5364 134 6 0 chr13 47046908 47047751 -54825418 - L1PA13 LINE L1 -16 6147 5300 2157 187 26 23 chr13 47048044 47048472 -54824697 - MSTB1 LTR MaLR 0 432 4 2038 119 44 0 chr13 47048599 47048893 -54824276 + AluSg SINE Alu 3 309 -1 343 122 0 0 chr13 47048962 47049011 -54824158 + MLT1A1 LTR MaLR 2 50 -315 551 159 22 5 chr13 47049012 47049116 -54824053 + MSTD LTR MaLR 3 94 -302 1054 119 77 0 chr13 47049119 47049287 -54823882 - AluSx SINE Alu -131 181 1 894 245 193 25 chr13 47049289 47049885 -54823284 + L1M4c LINE L1 1505 2200 -4184 337 267 9 9 chr13 47049931 47050036 -54823133 + (TA)n Simple_repeat Simple_repeat 1 105 0 785 152 66 81 chr13 47050071 47050268 -54822901 - MLT1A1 LTR MaLR 0 365 172 1501 243 57 3 chr13 47050341 47050905 -54822264 + L1M4c LINE L1 2956 3549 -2833 24 32 0 0 chr13 47051030 47051061 -54822108 + AT_rich Low_complexity Low_complexity 1 31 0 442 293 17 29 chr13 47051462 47051636 -54821533 - L1ME LINE L1 -461 5709 5538 317 301 129 10 chr13 47051808 47052017 -54821152 - L1ME LINE L1 -817 5329 5096 27 29 0 0 chr13 47052822 47052856 -54820313 + AT_rich Low_complexity Low_complexity 1 34 0 2229 63 18 0 chr13 47052933 47053219 -54819950 + AluY SINE Alu 1 291 -20 24 32 0 0 chr13 47053224 47053255 -54819914 + AT_rich Low_complexity Low_complexity 1 31 0 2169 180 91 0 chr13 47053308 47053438 -54819731 - L1MA9 LINE L1 -12 6300 6183 297 0 0 0 chr13 47053438 47053471 -54819698 + (TG)n Simple_repeat Simple_repeat 2 34 0 2169 180 91 0 chr13 47053471 47053779 -54819390 - L1MA9 LINE L1 -129 6183 5822 232 252 10 78 chr13 47053788 47053891 -54819278 + L1MA9 LINE L1 5718 5813 -478 1560 193 3 23 chr13 47054221 47054521 -54818648 + AluJo SINE Alu 2 295 -17 21 36 0 0 chr13 47054737 47054765 -54818404 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 47054788 47054811 -54818358 + AT_rich Low_complexity Low_complexity 1 23 0 222 220 0 0 chr13 47057462 47057521 -54815648 + (TA)n Simple_repeat Simple_repeat 1 59 0 21 36 0 0 chr13 47058947 47058975 -54814194 + AT_rich Low_complexity Low_complexity 1 28 0 2284 76 0 16 chr13 47059265 47059569 -54813600 - AluY SINE Alu -12 299 1 245 35 0 0 chr13 47060032 47060061 -54813108 - U2 snRNA snRNA -159 29 1 32 57 0 0 chr13 47062553 47062606 -54810563 + AT_rich Low_complexity Low_complexity 1 53 0 370 299 71 57 chr13 47062625 47062836 -54810333 + MIR SINE MIR 3 216 -46 192 184 0 0 chr13 47063050 47063099 -54810070 + GA-rich Low_complexity Low_complexity 2 50 0 23 0 0 0 chr13 47063195 47063218 -54809951 + AT_rich Low_complexity Low_complexity 1 23 0 260 356 115 41 chr13 47063313 47063773 -54809396 + L2 LINE L2 619 1112 -2202 234 350 128 0 chr13 47064022 47064139 -54809030 + L2 LINE L2 1490 1621 -1693 3591 218 46 7 chr13 47064441 47065457 -54807712 - L1MB4 LINE L1 -1 6179 5129 262 240 0 0 chr13 47065549 47065624 -54807545 + L1MB4 LINE L1 6105 6179 -1 225 119 0 0 chr13 47065721 47065763 -54807406 + (TA)n Simple_repeat Simple_repeat 1 42 0 3268 247 26 33 chr13 47065763 47066844 -54806325 - L1MB4 LINE L1 -1026 5120 4048 23 33 0 0 chr13 47066980 47067010 -54806159 + AT_rich Low_complexity Low_complexity 1 30 0 459 304 69 5 chr13 47069034 47069238 -54803931 - MIR SINE MIR -10 252 36 293 315 56 0 chr13 47069284 47069446 -54803723 - MER112 DNA MER1_type -9 251 81 670 262 27 21 chr13 47070214 47070413 -54802756 - LTR40b LTR ERVL -2 460 271 * 683 264 20 15 chr13 47070411 47070608 -54802561 - LTR40b LTR ERVL -156 306 109 807 128 0 0 chr13 47071663 47071788 -54801381 - L1MA10 LINE L1 0 6334 6210 2396 209 6 4 chr13 47071793 47072275 -54800894 + L1MB1 LINE L1 5677 6159 -30 358 110 41 0 chr13 47072331 47072404 -54800765 + L1MA10 LINE L1 6257 6332 -2 24 53 0 0 chr13 47072547 47072585 -54800584 + AT_rich Low_complexity Low_complexity 1 38 0 2131 103 3 3 chr13 47073238 47073538 -54799631 + AluSc SINE Alu 1 300 -9 321 253 0 0 chr13 47073907 47073994 -54799175 + (CTA)n Simple_repeat Simple_repeat 3 89 0 22 35 0 0 chr13 47075809 47075838 -54797331 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr13 47076113 47076168 -54797001 + AT_rich Low_complexity Low_complexity 1 55 0 1000 172 30 84 chr13 47076640 47076936 -54796233 - LTR4 LTR ERV1 0 596 317 472 289 20 49 chr13 47077128 47077332 -54795837 - LTR4 LTR ERV1 -396 200 3 183 303 76 48 chr13 47077403 47077548 -54795621 + L2 LINE L2 1738 1886 -1428 1161 322 87 44 chr13 47077549 47078363 -54794806 + L2 LINE L2 2020 2868 -446 356 323 192 14 chr13 47078435 47078732 -54794437 + L2 LINE L2 2960 3309 -4 1485 152 40 71 chr13 47079680 47080073 -54793096 - MER67C LTR ERV1 -247 267 1 25 31 0 0 chr13 47080550 47080582 -54792587 + AT_rich Low_complexity Low_complexity 1 32 0 411 153 0 0 chr13 47080712 47080784 -54792385 - L1MA5 LINE L1 -3 6297 6226 469 266 63 13 chr13 47081216 47081374 -54791795 - MIR SINE MIR -57 205 40 27 0 0 0 chr13 47081443 47081470 -54791699 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr13 47081542 47081578 -54791591 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 47081841 47081863 -54791306 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr13 47081868 47081911 -54791258 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 483 147 55 0 chr13 47081915 47082024 -54791145 + L1MA9 LINE L1 6197 6311 -1 2228 69 41 0 chr13 47082206 47082497 -54790672 + AluY SINE Alu 1 303 -8 121 27 0 0 chr13 47082520 47082669 -54790500 + AT_rich Low_complexity Low_complexity 1 149 0 403 324 79 35 chr13 47083591 47083881 -54789288 - L2 LINE L2 -133 3180 2878 4255 246 69 33 chr13 47084022 47084349 -54788820 - Cheshire DNA MER1_type -3 2417 2103 1967 157 0 0 chr13 47084349 47084648 -54788521 - AluSx SINE Alu -13 299 1 4255 246 69 33 chr13 47084648 47085768 -54787401 - Cheshire DNA MER1_type -317 2103 918 2256 109 0 0 chr13 47085969 47086271 -54786898 + AluSg1 SINE Alu 4 305 -4 1949 104 7 13 chr13 47086419 47086718 -54786451 - AluSc SINE Alu -9 300 4 2143 110 0 7 chr13 47087736 47088035 -54785134 - AluSc SINE Alu -12 297 1 694 229 11 39 chr13 47088035 47088207 -54784962 + MSTD LTR MaLR 220 388 -8 1784 138 54 40 chr13 47089129 47089499 -54783670 + THE1C LTR MaLR 1 375 0 446 222 0 0 chr13 47089932 47090022 -54783147 - FLAM_A SINE Alu -10 132 43 29 0 0 0 chr13 47090116 47090145 -54783024 + AT_rich Low_complexity Low_complexity 1 29 0 1723 100 26 11 chr13 47090310 47090579 -54782590 + MER51A LTR ERV1 361 633 -1 47 33 0 0 chr13 47091575 47091636 -54781533 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr13 47092230 47092252 -54780917 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 47092353 47092379 -54780790 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr13 47092613 47092645 -54780524 + AT_rich Low_complexity Low_complexity 1 32 0 186 373 82 0 chr13 47094133 47094243 -54778926 + L2 LINE L2 2967 3085 -228 21 0 0 0 chr13 47094404 47094425 -54778744 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr13 47096555 47096579 -54776590 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2038 94 10 16 chr13 47096587 47096894 -54776275 + AluY SINE Alu 7 311 0 216 0 0 0 chr13 47097134 47097158 -54776011 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr13 47097745 47097772 -54775397 + AT_rich Low_complexity Low_complexity 1 27 0 329 322 92 13 chr13 47098620 47098847 -54774322 + L1ME LINE L1 5397 5641 -523 21 0 0 0 chr13 47099090 47099111 -54774058 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 47099990 47100017 -54773152 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr13 47100253 47100280 -54772889 + AT_rich Low_complexity Low_complexity 1 27 0 264 312 47 77 chr13 47100416 47100470 -54772699 - MLT1H1 LTR MaLR -293 262 208 1524 158 179 16 chr13 47100470 47100838 -54772331 + MSTA LTR MaLR 1 428 0 264 312 47 77 chr13 47100838 47100953 -54772216 - MLT1H1 LTR MaLR -347 208 98 369 43 0 0 chr13 47101086 47101133 -54772036 + (CA)n Simple_repeat Simple_repeat 2 48 0 2646 20 0 3 chr13 47101171 47101472 -54771697 - AluYb8 SINE Alu -18 300 1 1236 231 83 18 chr13 47101669 47102353 -54770816 + L1MDa LINE L1 2195 2913 -3627 205 159 45 0 chr13 47102381 47102425 -54770744 + (TA)n Simple_repeat Simple_repeat 2 47 0 663 323 49 63 chr13 47103287 47103776 -54769393 + L2 LINE L2 2829 3310 -3 7076 157 19 6 chr13 47103835 47105118 -54768051 - HSMAR2 DNA Mariner -1 1301 2 21 0 0 0 chr13 47105621 47105642 -54767527 + AT_rich Low_complexity Low_complexity 1 21 0 346 338 7 0 chr13 47107372 47107511 -54765658 - HERVL LTR ERVL -1484 4280 4141 378 353 85 35 chr13 47107738 47108021 -54765148 - HERVL LTR ERVL -1843 3811 3515 402 327 33 47 chr13 47108259 47108564 -54764605 - HERVL LTR ERVL -2441 2555 2240 625 313 40 22 chr13 47108697 47108969 -54764200 - HERVL LTR ERVL -3096 1900 1624 2582 100 0 19 chr13 47109182 47109553 -54763616 + THE1B LTR MaLR 1 364 0 621 341 80 18 chr13 47109680 47110070 -54763099 - HERVL LTR ERVL -3855 1141 728 23 54 0 0 chr13 47110132 47110169 -54763000 + AT_rich Low_complexity Low_complexity 1 37 0 4022 191 10 23 chr13 47110169 47111092 -54762077 - L1MB1 LINE L1 -4 6164 5254 21 71 0 0 chr13 47111307 47111349 -54761820 + AT_rich Low_complexity Low_complexity 1 42 0 29 47 0 0 chr13 47111887 47111930 -54761239 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 47112266 47112288 -54760881 + AT_rich Low_complexity Low_complexity 1 22 0 9025 218 82 27 chr13 47112294 47112965 -54760204 + L1MB2 LINE L1 22 655 -5727 183 80 0 0 chr13 47112965 47112990 -54760179 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 9025 218 82 27 chr13 47112990 47115059 -54758110 + L1MB2 LINE L1 655 2609 -3773 236 30 30 0 chr13 47115059 47115092 -54758077 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1844 147 0 30 chr13 47115094 47115393 -54757776 - AluSx SINE Alu -22 290 1 9025 218 82 27 chr13 47115393 47116104 -54757065 + L1MB2 LINE L1 2609 3665 -2717 3988 209 36 24 chr13 47116100 47117550 -54755619 + L1MB2 LINE L1 4934 6405 -2 * 303 235 23 68 chr13 47117574 47117706 -54755463 + L1MC5 LINE L1 7609 7734 -227 1661 174 131 62 chr13 47117706 47117822 -54755347 - MER47B DNA MER2_type -1906 417 310 2084 149 0 29 chr13 47117822 47118165 -54755004 + MER1B DNA MER1_type 5 337 0 1661 174 131 62 chr13 47118165 47118438 -54754731 - MER47B DNA MER2_type -2013 310 1 290 200 27 0 chr13 47118502 47118577 -54754592 + L1MC4 LINE L1 7925 8001 -41 648 241 35 0 chr13 47119936 47120081 -54753088 + MER8 DNA MER2_type 3 152 -87 295 44 22 0 chr13 47120081 47120126 -54753043 - L1MA6 LINE L1 -401 5899 5854 341 358 45 0 chr13 47120203 47120337 -54752832 + LTR16A1 LTR ERVL 7 146 -311 536 198 9 9 chr13 47120544 47120660 -54752509 - MER58B DNA MER1_type 0 341 226 2113 208 26 37 chr13 47120660 47121594 -54751575 + L1M3 LINE L1 4756 5677 -491 421 236 9 9 chr13 47121624 47121730 -54751439 + LTR16A1 LTR ERVL 352 457 0 35 77 0 0 chr13 47121972 47122037 -54751132 + AT_rich Low_complexity Low_complexity 1 65 0 1148 225 153 90 chr13 47122059 47122561 -54750608 + MER39 LTR ERV1 1 707 0 237 275 14 0 chr13 47122562 47122631 -54750538 + (TA)n Simple_repeat Simple_repeat 1 70 0 441 0 0 0 chr13 47124048 47124097 -54749072 + (TA)n Simple_repeat Simple_repeat 1 49 0 190 363 57 40 chr13 47124133 47124257 -54748912 - MIR SINE MIR -62 146 21 286 278 0 79 chr13 47124429 47124555 -54748614 + MER5A DNA MER1_type 1 116 -73 204 150 0 50 chr13 47124908 47124968 -54748201 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 33 25 0 0 chr13 47124969 47125009 -54748160 + AT_rich Low_complexity Low_complexity 1 40 0 185 136 0 23 chr13 47125659 47125703 -54747466 + (GA)n Simple_repeat Simple_repeat 1 43 0 828 237 22 56 chr13 47126664 47126896 -54746273 - MER58A DNA MER1_type 0 224 1 234 349 59 33 chr13 47126910 47127062 -54746107 + L3 LINE CR1 510 665 -912 249 33 0 0 chr13 47127130 47127160 -54746009 + (TA)n Simple_repeat Simple_repeat 2 31 0 291 108 88 0 chr13 47127351 47127453 -54745716 + (TA)n Simple_repeat Simple_repeat 1 111 0 485 204 0 19 chr13 47127465 47127568 -54745601 - AluJ/FLAM SINE Alu -211 101 1 32 0 0 0 chr13 47127989 47128021 -54745148 + AT_rich Low_complexity Low_complexity 1 32 0 29 60 0 0 chr13 47128322 47128372 -54744797 + AT_rich Low_complexity Low_complexity 1 50 0 231 125 0 0 chr13 47128606 47128646 -54744523 + (CA)n Simple_repeat Simple_repeat 1 40 0 221 330 165 0 chr13 47128933 47129036 -54744133 + L2 LINE L2 2541 2660 -654 1360 234 62 31 chr13 47129036 47129485 -54743684 + MLT1C LTR MaLR 1 463 -4 461 335 92 17 chr13 47129548 47129867 -54743302 + L2 LINE L2 2671 3011 -302 651 209 118 51 chr13 47130028 47130324 -54742845 + MER33 DNA MER1_type 1 316 -8 2266 93 0 0 chr13 47130519 47130808 -54742361 + AluY SINE Alu 1 289 -22 808 188 50 11 chr13 47131139 47131320 -54741849 - L1MB1 LINE L1 -8 6181 5994 1921 158 119 13 chr13 47131320 47131707 -54741462 + MSTA LTR MaLR 1 428 0 8187 213 24 5 chr13 47131708 47133314 -54739855 + MSTA-int LTR MaLR 2 1637 -14 1366 209 142 21 chr13 47133378 47133751 -54739418 + MSTB LTR MaLR 4 421 -5 988 199 20 0 chr13 47133753 47133954 -54739215 - L1MB1 LINE L1 -171 5997 5793 * 2252 179 28 5 chr13 47133941 47134365 -54738804 + L1MB1 LINE L1 5340 5773 -395 1369 291 55 26 chr13 47134809 47135753 -54737416 - L1M4 LINE L1 -1260 4886 3916 221 180 16 33 chr13 47135909 47135970 -54737199 + (TTTA)n Simple_repeat Simple_repeat 4 63 0 221 172 52 0 chr13 47135978 47136036 -54737133 + (TA)n Simple_repeat Simple_repeat 1 61 0 1173 233 84 35 chr13 47136489 47136691 -54736478 - MLT1D LTR MaLR -2 503 312 226 0 0 56 chr13 47136691 47136727 -54736442 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1173 233 84 35 chr13 47136727 47136893 -54736276 - MLT1D LTR MaLR -193 312 117 244 209 0 60 chr13 47137044 47137111 -54736058 - LTR33 LTR ERVL -4 517 455 237 314 195 24 chr13 47137398 47137567 -54735602 + MIR SINE MIR 65 262 0 324 295 29 58 chr13 47138681 47138820 -54734349 + MIR SINE MIR 7 141 -121 24 32 0 0 chr13 47138898 47138929 -54734240 + AT_rich Low_complexity Low_complexity 1 31 0 180 176 0 0 chr13 47139311 47139345 -54733824 + (CA)n Simple_repeat Simple_repeat 2 35 0 2163 45 45 0 chr13 47140980 47141247 -54731922 + AluY SINE Alu 1 279 -32 333 100 0 0 chr13 47141249 47141299 -54731870 + (GGGA)n Simple_repeat Simple_repeat 4 53 0 214 50 50 0 chr13 47143078 47143118 -54730051 + (TA)n Simple_repeat Simple_repeat 1 42 0 337 159 0 140 chr13 47143183 47143290 -54729879 + L1MC4 LINE L1 6612 6703 -1339 21 57 0 0 chr13 47144338 47144373 -54728796 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 47144767 47144789 -54728380 + AT_rich Low_complexity Low_complexity 1 22 0 1639 179 7 17 chr13 47146066 47146368 -54726801 - AluJb SINE Alu -13 299 1 679 348 39 11 chr13 47147041 47147323 -54725846 + LTR16A LTR ERVL 161 450 0 1749 151 52 0 chr13 47147912 47148203 -54724966 + AluSx SINE Alu 1 306 -6 27 0 0 0 chr13 47148250 47148277 -54724892 + AT_rich Low_complexity Low_complexity 1 27 0 281 217 0 0 chr13 47149176 47149236 -54723933 - MLT2A2 LTR ERVL -3 450 391 2090 213 9 44 chr13 47149274 47149724 -54723445 - MLT2B3 LTR ERVL -39 515 82 568 119 24 0 chr13 47149814 47149898 -54723271 - MLT2B3 LTR ERVL -466 88 3 1557 181 3 31 chr13 47150251 47150544 -54722625 + AluJb SINE Alu 1 285 -27 281 213 0 0 chr13 47151087 47151148 -54722021 - L1MC4 LINE L1 -522 7520 7460 618 214 99 45 chr13 47151151 47151394 -54721775 - L1MC4 LINE L1 -679 7363 7108 31 26 0 0 chr13 47151701 47151739 -54721430 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 47151902 47151924 -54721245 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr13 47152542 47152578 -54720591 + AT_rich Low_complexity Low_complexity 1 36 0 1391 219 129 7 chr13 47153029 47153472 -54719697 + L1MB7 LINE L1 4894 5390 -756 307 163 11 109 chr13 47153450 47153542 -54719627 + L1MB7 LINE L1 5644 5726 -452 * 593 172 40 103 chr13 47153547 47153721 -54719448 + L1MB7 LINE L1 5978 6140 -44 2202 95 0 3 chr13 47153722 47154052 -54719117 - AluY SINE Alu 0 345 17 706 236 21 155 chr13 47154545 47154965 -54718204 - L2 LINE L2 -35 3278 2915 531 281 52 24 chr13 47158012 47158222 -54714947 - MLT1B LTR MaLR 0 467 252 1975 152 43 3 chr13 47158226 47158548 -54714621 + LTR28 LTR ERV1 1 335 -685 530 282 111 24 chr13 47158537 47158789 -54714380 + LTR27 LTR ERV1 363 636 0 * 631 249 53 34 chr13 47158801 47159010 -54714159 - MLT1B LTR MaLR -175 215 3 799 238 51 69 chr13 47159021 47159425 -54713744 - MLT1A1 LTR MaLR -13 352 3 197 327 36 45 chr13 47159500 47159610 -54713559 - L2 LINE L2 -1330 1984 1876 28 29 0 0 chr13 47160374 47160409 -54712760 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 47161143 47161166 -54712003 + AT_rich Low_complexity Low_complexity 1 23 0 1934 143 0 0 chr13 47161231 47161518 -54711651 + AluSx SINE Alu 1 287 -25 201 114 57 0 chr13 47161534 47161569 -54711600 + A-rich Low_complexity Low_complexity 5 41 0 575 263 42 56 chr13 47162305 47162518 -54710651 + MER97b DNA MER1_type? 1 210 -843 1581 278 75 36 chr13 47162523 47163318 -54709851 - L1ME2 LINE L1 -2 6162 5337 199 289 101 98 chr13 47163583 47163929 -54709240 + L2 LINE L2 2967 3313 0 1392 187 62 57 chr13 47164196 47164581 -54708588 + MLT1B LTR MaLR 4 390 0 1713 167 0 13 chr13 47165009 47165309 -54707860 - AluJo SINE Alu -16 296 1 21 36 0 0 chr13 47165630 47165658 -54707511 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 47166189 47166218 -54706951 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr13 47166254 47166307 -54706862 + AT_rich Low_complexity Low_complexity 1 53 0 32 57 0 0 chr13 47166968 47167021 -54706148 + AT_rich Low_complexity Low_complexity 1 53 0 24 32 0 0 chr13 47168117 47168148 -54705021 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 47168406 47168427 -54704742 + AT_rich Low_complexity Low_complexity 1 21 0 311 298 1 9 chr13 47168429 47168555 -54704614 + L1ME3 LINE L1 5259 5360 -786 225 258 74 42 chr13 47168618 47168808 -54704361 - L1ME3A LINE L1 -223 5947 5752 1126 281 54 38 chr13 47168809 47169200 -54703969 + LTR40a LTR ERVL 118 514 -5 432 344 58 19 chr13 47169226 47169744 -54703425 + L1ME3 LINE L1 5353 5890 -272 841 313 77 88 chr13 47169853 47170671 -54702498 - L2 LINE L2 -884 2430 1622 4045 263 46 66 chr13 47170698 47172075 -54701094 + L1M4 LINE L1 22 1425 -5219 1954 148 49 22 chr13 47172075 47172440 -54700729 + THE1C LTR MaLR 1 375 0 4045 263 46 66 chr13 47172440 47173657 -54699512 + L1M4 LINE L1 1425 2665 -3979 378 76 0 101 chr13 47173657 47173736 -54699433 + L1PA6 LINE L1 6084 6154 0 4045 263 46 66 chr13 47173736 47173991 -54699178 + L1M4 LINE L1 2665 2924 -3720 2352 155 39 5 chr13 47173991 47174403 -54698766 - MSTA LTR MaLR 0 428 3 4045 263 46 66 chr13 47174403 47175566 -54697603 + L1M4 LINE L1 2924 4068 -2576 866 62 0 0 chr13 47175682 47175794 -54697375 - L1P LINE L1 -988 5158 5047 26 30 0 0 chr13 47175944 47175977 -54697192 + AT_rich Low_complexity Low_complexity 1 33 0 681 313 72 45 chr13 47177125 47177502 -54695667 + L2 LINE L2 2505 2891 -423 620 254 91 136 chr13 47177804 47178201 -54694968 + MLT1H1 LTR MaLR 1 379 -216 2685 149 5 5 chr13 47178202 47178630 -54694539 + MSTA LTR MaLR 1 428 0 319 309 13 40 chr13 47178855 47179007 -54694162 + L2 LINE L2 3160 3307 -6 1921 197 93 25 chr13 47179011 47179443 -54693726 + MLT2B1 LTR ERVL 1 461 -59 21 0 0 0 chr13 47179443 47179464 -54693705 + AT_rich Low_complexity Low_complexity 1 21 0 265 241 0 0 chr13 47179464 47179518 -54693651 - MLT2B1 LTR ERVL -82 438 385 194 176 20 0 chr13 47179544 47179595 -54693574 + (TA)n Simple_repeat Simple_repeat 2 53 0 261 204 0 0 chr13 47179627 47179676 -54693493 + MLT2B1 LTR ERVL 472 520 0 293 220 100 0 chr13 47179824 47179924 -54693245 - L1MA10 LINE L1 -136 6198 6089 985 365 58 10 chr13 47179973 47180474 -54692695 + L2 LINE L2 1048 1572 -1742 180 0 0 0 chr13 47180477 47180497 -54692672 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 694 169 24 0 chr13 47180532 47180656 -54692513 - FRAM SINE Alu -3 173 47 14172 212 46 23 chr13 47180657 47181019 -54692150 - L1PB1 LINE L1 0 6867 6515 264 59 0 0 chr13 47181019 47181053 -54692116 + (TA)n Simple_repeat Simple_repeat 2 35 0 14172 212 46 23 chr13 47181053 47184838 -54688331 - L1PB1 LINE L1 -352 6515 2314 1657 198 3 0 chr13 47184838 47185141 -54688028 + AluSx SINE Alu 4 307 -5 14172 212 46 23 chr13 47185141 47187505 -54685664 - L1PB1 LINE L1 -4553 2314 6 2767 120 65 7 chr13 47187598 47188081 -54685088 + LTR12 LTR ERV1 1 582 -132 1786 171 0 24 chr13 47188376 47188674 -54684495 + AluJb SINE Alu 3 293 -19 226 49 24 24 chr13 47188674 47188715 -54684454 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 720 256 0 5 chr13 47188974 47189173 -54683996 + L1M4 LINE L1 4967 5164 -982 22 56 0 0 chr13 47189633 47189669 -54683500 + AT_rich Low_complexity Low_complexity 1 36 0 2206 105 102 3 chr13 47189881 47190224 -54682945 + MER51B LTR ERV1 1 377 0 870 196 11 0 chr13 47190237 47190426 -54682743 - L1MA6 LINE L1 0 6300 6110 22 70 0 0 chr13 47190433 47190476 -54682693 + AT_rich Low_complexity Low_complexity 1 43 0 2073 148 0 0 chr13 47190871 47191175 -54681994 - AluSx SINE Alu -8 304 1 230 410 42 0 chr13 47191188 47191283 -54681886 + L2 LINE L2 3197 3295 -18 231 247 0 86 chr13 47191443 47191524 -54681645 + L2 LINE L2 3193 3266 -6 2072 123 0 19 chr13 47191774 47192082 -54681087 + AluY SINE Alu 2 303 -8 3919 204 16 47 chr13 47193327 47193408 -54679761 + L1MB3 LINE L1 5260 5342 -841 1624 199 7 7 chr13 47193408 47193705 -54679464 + AluJb SINE Alu 1 297 -15 3919 204 16 47 chr13 47193705 47194576 -54678593 + L1MB3 LINE L1 5342 6182 -1 714 181 27 7 chr13 47195704 47195853 -54677316 + L1MA5 LINE L1 5798 5949 -351 3293 225 81 71 chr13 47195857 47196970 -54676199 - LTR28 LTR ERV1 -1 1737 1 1636 149 70 9 chr13 47196972 47197301 -54675868 + L1MA5 LINE L1 5948 6296 -4 1284 199 64 0 chr13 47197312 47197609 -54675560 + L1MA8 LINE L1 5975 6290 -1 21 0 0 0 chr13 47198592 47198613 -54674556 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 47198655 47198692 -54674477 + AT_rich Low_complexity Low_complexity 1 37 0 316 338 83 8 chr13 47198736 47198869 -54674300 - MIR SINE MIR -73 189 47 351 96 0 0 chr13 47199521 47199573 -54673596 + (TA)n Simple_repeat Simple_repeat 2 53 0 230 139 0 23 chr13 47199767 47199810 -54673359 - MER5B DNA MER1_type -134 44 3 25 0 0 0 chr13 47200995 47201020 -54672149 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 47201377 47201405 -54671764 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 47201486 47201509 -54671660 + AT_rich Low_complexity Low_complexity 1 23 0 246 174 0 0 chr13 47202020 47202066 -54671103 + (CTA)n Simple_repeat Simple_repeat 1 46 0 2221 244 36 52 chr13 47203264 47204072 -54669097 + L1 LINE L1 3317 4111 -2035 1188 195 5 23 chr13 47204072 47204293 -54668876 - AluJb SINE Alu -95 217 1 1049 242 51 57 chr13 47204455 47204786 -54668383 + MLT1D LTR MaLR 1 329 -176 182 114 0 29 chr13 47204788 47204823 -54668346 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 498 252 57 2 chr13 47204827 47204948 -54668221 + MLT1D LTR MaLR 267 382 -85 4146 173 58 5 chr13 47205166 47205534 -54667635 - Tigger1 DNA MER2_type 0 2418 2071 706 155 16 0 chr13 47205534 47205663 -54667506 - L1MA3 LINE L1 -12 6293 6163 4146 173 58 5 chr13 47205663 47206087 -54667082 - Tigger1 DNA MER2_type -347 2071 1584 1253 76 0 12 chr13 47206087 47206258 -54666911 - AluY SINE Alu -14 297 129 8113 181 32 3 chr13 47206264 47207805 -54665364 - Tigger1 DNA MER2_type -832 1586 1 211 391 90 47 chr13 47208122 47208465 -54664704 - L2 LINE L2 0 3272 2915 333 405 10 5 chr13 47208572 47208767 -54664402 - L2 LINE L2 -538 2776 2581 281 392 44 10 chr13 47208817 47209021 -54664148 + MIR SINE MIR 2 212 -50 191 250 0 0 chr13 47209038 47209078 -54664091 + MIR SINE MIR 173 212 -50 32 81 0 0 chr13 47209785 47209859 -54663310 + AT_rich Low_complexity Low_complexity 1 74 0 1381 281 87 53 chr13 47210184 47210550 -54662619 - L2 LINE L2 -1101 2213 1861 1821 120 26 4 chr13 47210550 47210817 -54662352 + AluSx SINE Alu 1 273 -39 1381 281 87 53 chr13 47210817 47211148 -54662021 - L2 LINE L2 -1453 1861 1492 207 301 96 44 chr13 47211270 47211406 -54661763 + L3b LINE CR1 1297 1439 -144 21 0 0 0 chr13 47211663 47211684 -54661485 + AT_rich Low_complexity Low_complexity 1 21 0 24 91 0 0 chr13 47212877 47212943 -54660226 + AT_rich Low_complexity Low_complexity 1 66 0 2329 162 49 2 chr13 47213153 47213561 -54659608 + MER57B LTR ERV1 2 428 -6 21 0 0 0 chr13 47213589 47213610 -54659559 + AT_rich Low_complexity Low_complexity 1 21 0 266 94 19 38 chr13 47213612 47213665 -54659504 - L1MA6 LINE L1 0 6300 6249 766 241 11 7 chr13 47213864 47214060 -54659109 - L1MB8 LINE L1 -2 6176 5977 611 241 36 109 chr13 47214291 47214648 -54658521 - L1ME1 LINE L1 -5 6161 5831 993 309 36 39 chr13 47214669 47215340 -54657829 + L1PA15-16 LINE L1 2 647 -6203 336 330 32 68 chr13 47215506 47215785 -54657384 + L1PA15-16 LINE L1 1191 1459 -5390 672 257 23 82 chr13 47215935 47216299 -54656870 + L1PA15-16 LINE L1 1432 1781 -5069 1821 147 0 4 chr13 47216299 47216571 -54656598 + AluSx SINE Alu 1 271 -41 26 0 0 0 chr13 47217090 47217116 -54656053 + AT_rich Low_complexity Low_complexity 1 26 0 229 269 39 26 chr13 47218018 47218096 -54655073 + MLT1J2 LTR MaLR 67 145 -305 317 282 36 9 chr13 47218911 47219021 -54654148 + L2 LINE L2 2263 2375 -939 393 329 83 17 chr13 47219459 47219699 -54653470 + L2 LINE L2 3002 3257 -56 207 0 0 0 chr13 47219718 47219741 -54653428 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr13 47219909 47219933 -54653236 + AT_rich Low_complexity Low_complexity 1 24 0 181 326 12 47 chr13 47220202 47220288 -54652881 + MIR SINE MIR 134 216 -46 24 0 0 0 chr13 47220677 47220701 -54652468 + AT_rich Low_complexity Low_complexity 1 24 0 1251 211 7 33 chr13 47220714 47220989 -54652180 + AluJo SINE Alu 15 282 -30 212 0 0 35 chr13 47220992 47221021 -54652148 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 32 67 0 0 chr13 47221624 47221684 -54651485 + AT_rich Low_complexity Low_complexity 1 60 0 180 0 0 0 chr13 47221944 47221964 -54651205 + (TA)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr13 47222040 47222087 -54651082 + AT_rich Low_complexity Low_complexity 1 47 0 788 238 34 45 chr13 47223471 47223736 -54649433 + L1MB7 LINE L1 5910 6171 -13 270 0 0 0 chr13 47224180 47224210 -54648959 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 35 0 0 chr13 47224678 47224707 -54648462 + AT_rich Low_complexity Low_complexity 1 29 0 236 277 20 20 chr13 47224881 47224982 -54648187 - MLT1I LTR MaLR 0 409 309 3362 224 38 12 chr13 47225295 47226157 -54647012 + L1MB8 LINE L1 4069 4953 -1193 30 0 0 0 chr13 47227446 47227476 -54645693 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 47227894 47227923 -54645246 + AT_rich Low_complexity Low_complexity 1 29 0 641 236 0 0 chr13 47227974 47228118 -54645051 + L1MA10 LINE L1 6180 6323 -11 1062 262 121 15 chr13 47229811 47230645 -54642524 + L1MC4 LINE L1 5088 5403 -743 * 2100 224 35 11 chr13 47230239 47230805 -54642364 + L1MB8 LINE L1 5599 6178 0 1637 201 35 22 chr13 47231287 47231656 -54641513 + THE1C LTR MaLR 1 374 -1 376 317 95 27 chr13 47232229 47232491 -54640678 + L2 LINE L2 3014 3293 -20 219 188 0 0 chr13 47232502 47232550 -54640619 + GA-rich Low_complexity Low_complexity 2 49 0 235 288 124 20 chr13 47233198 47233448 -54639721 - L1MC/D LINE L1 -2511 5531 5256 350 302 67 24 chr13 47233780 47234121 -54639048 - L1MC/D LINE L1 -1301 4845 4490 392 164 0 0 chr13 47234546 47234613 -54638556 + L1MA9 LINE L1 6207 6273 -39 332 261 0 0 chr13 47234655 47234747 -54638422 - L1MC/D LINE L1 -1643 4503 4412 3415 202 11 2 chr13 47234755 47235369 -54637800 + MER52A LTR ERV1 1136 1755 0 1129 119 10 0 chr13 47235369 47235562 -54637607 - L1P4 LINE L1 -718 5448 5254 299 181 14 0 chr13 47236362 47236434 -54636735 + CT-rich Low_complexity Low_complexity 4 76 0 22 56 0 0 chr13 47236667 47236703 -54636466 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 47236860 47236881 -54636288 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 47237014 47237050 -54636119 + AT_rich Low_complexity Low_complexity 1 36 0 278 333 54 0 chr13 47237770 47237899 -54635270 - MIR SINE MIR 0 262 127 647 261 76 24 chr13 47238139 47238388 -54634781 - Charlie4a DNA MER1_type 0 508 247 1911 142 0 3 chr13 47238407 47238695 -54634474 + AluSq SINE Alu 16 302 -11 1851 256 141 9 chr13 47239583 47240164 -54633005 - MER76 LTR ERV -1 687 30 371 98 16 0 chr13 47240164 47240225 -54632944 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 396 368 63 35 chr13 47240485 47240794 -54632375 + L2 LINE L2 1515 1814 -1500 1685 151 73 28 chr13 47240794 47241151 -54632018 - THE1C LTR MaLR 0 375 3 396 368 63 35 chr13 47241151 47241441 -54631728 + L2 LINE L2 1814 2131 -1183 188 345 50 17 chr13 47241441 47241560 -54631609 + L2 LINE L2 2294 2416 -898 833 245 159 45 chr13 47241592 47241906 -54631263 - MLT1A1 LTR MaLR 0 365 16 8132 116 0 34 chr13 47242082 47243321 -54629848 - THE1B-int LTR MaLR -383 1197 1 1903 152 27 41 chr13 47243321 47243690 -54629479 - THE1B LTR MaLR 0 364 1 448 169 12 12 chr13 47243690 47243773 -54629396 - MSTB LTR MaLR -343 83 1 821 232 28 0 chr13 47243835 47244012 -54629157 - MER58A DNA MER1_type -13 211 30 938 204 32 5 chr13 47244182 47244368 -54628801 - MSTB LTR MaLR 0 426 236 1948 256 26 41 chr13 47244386 47244521 -54628648 - MER77 LTR ERV1 0 605 470 2185 102 14 0 chr13 47244521 47244814 -54628355 + AluSg SINE Alu 1 297 -13 1948 256 26 41 chr13 47244814 47245288 -54627881 - MER77 LTR ERV1 -135 470 5 248 333 13 0 chr13 47245412 47245487 -54627682 + L2 LINE L2 3188 3263 -9 474 185 0 56 chr13 47245853 47245961 -54627208 + MER58B DNA MER1_type 229 330 -11 26 50 0 0 chr13 47246351 47246391 -54626778 + AT_rich Low_complexity Low_complexity 1 40 0 331 299 121 45 chr13 47247712 47247936 -54625233 + MIR SINE MIR 20 260 -2 1478 190 0 67 chr13 47248112 47248439 -54624730 + AluJb SINE Alu 1 305 -7 28 29 0 0 chr13 47249863 47249898 -54623271 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 47249940 47249969 -54623200 + AT_rich Low_complexity Low_complexity 1 29 0 662 184 49 110 chr13 47252295 47252458 -54620711 - MER5A DNA MER1_type -13 176 24 406 236 38 0 chr13 47253155 47253261 -54619908 + MLT1G LTR MaLR 481 590 0 379 261 169 10 chr13 47253881 47254076 -54619093 - MER5C DNA MER1_type 0 324 99 5527 70 6 0 chr13 47254078 47254808 -54618361 - L1P2 LINE L1 -1284 4862 4129 4037 47 2 35 chr13 47254777 47255414 -54617755 + L1P2 LINE L1 4848 5457 -697 * 6298 53 5 0 chr13 47255514 47256301 -54616868 + L1PA5 LINE L1 5358 6148 -6 222 299 103 0 chr13 47256338 47256425 -54616744 - MER5C DNA MER1_type -223 101 6 260 311 126 7 chr13 47256720 47256855 -54616314 + MIR SINE MIR 2 152 -110 27 73 0 0 chr13 47257050 47257105 -54616064 + AT_rich Low_complexity Low_complexity 1 55 0 332 348 12 50 chr13 47257457 47257618 -54615551 - LTR40a LTR ERVL -168 351 197 311 333 124 16 chr13 47257925 47258111 -54615058 - MIR SINE MIR -3 259 54 2076 93 0 84 chr13 47258278 47258610 -54614559 - AluSp SINE Alu -9 304 1 23 54 0 0 chr13 47258701 47258738 -54614431 + AT_rich Low_complexity Low_complexity 1 37 0 1590 324 39 4 chr13 47260076 47260619 -54612550 - MLT1E LTR MaLR -8 585 24 326 339 35 23 chr13 47260639 47260813 -54612356 - MIR SINE MIR -65 197 22 21 36 0 0 chr13 47260918 47260946 -54612223 + AT_rich Low_complexity Low_complexity 1 28 0 1635 186 0 47 chr13 47261077 47261395 -54611774 + AluJb SINE Alu 7 309 -3 359 349 128 0 chr13 47261508 47261703 -54611466 - MIR SINE MIR -4 258 39 722 158 0 39 chr13 47262267 47262394 -54610775 + FLAM_A SINE Alu 1 122 -11 1941 167 21 45 chr13 47262747 47262879 -54610290 + MER50 LTR ERV1 1 135 -599 2040 103 0 21 chr13 47262879 47263202 -54609967 + AluY SINE Alu 1 317 0 1941 167 21 45 chr13 47263202 47263445 -54609724 + MER50 LTR ERV1 135 368 -366 28 61 0 0 chr13 47263777 47263826 -54609343 + AT_rich Low_complexity Low_complexity 1 49 0 315 194 0 189 chr13 47264060 47264287 -54608882 + L1M4 LINE L1 3115 3298 -2848 313 234 97 26 chr13 47264336 47264490 -54608679 - L1MEc LINE L1 -4034 2362 2198 443 308 70 24 chr13 47264522 47264802 -54608367 - L1 LINE L1 -757 5389 5093 4151 189 38 61 chr13 47264986 47266079 -54607090 - MER11C LTR ERVK -4 1067 1 282 273 45 11 chr13 47267072 47267160 -54606009 - L2 LINE L2 0 3272 3182 21 36 0 0 chr13 47267222 47267250 -54605919 + AT_rich Low_complexity Low_complexity 1 28 0 212 125 42 0 chr13 47267836 47267884 -54605285 + (TA)n Simple_repeat Simple_repeat 1 50 0 2252 94 0 13 chr13 47268009 47268308 -54604861 - AluY SINE Alu -16 295 1 2206 258 62 30 chr13 47270227 47270424 -54602745 + L1ME2 LINE L1 5110 5299 -865 294 73 0 0 chr13 47270424 47270465 -54602704 + (TG)n Simple_repeat Simple_repeat 2 42 0 1967 140 0 3 chr13 47270465 47270750 -54602419 - AluSq SINE Alu -29 284 1 2206 258 62 30 chr13 47270750 47271565 -54601604 + L1ME2 LINE L1 5298 6153 -11 1269 293 25 24 chr13 47271631 47272082 -54601087 - LTR40a LTR ERVL 0 519 69 2654 183 10 2 chr13 47272104 47272595 -54600574 + L1MC1 LINE L1 5834 6328 -5 1013 124 17 28 chr13 47272615 47272793 -54600376 + L1MA8 LINE L1 5986 6161 -130 222 208 42 0 chr13 47273135 47273207 -54599962 + (TA)n Simple_repeat Simple_repeat 2 76 0 1858 214 80 91 chr13 47273964 47274699 -54598470 - LTR8A LTR ERV1 0 727 1 24 96 0 0 chr13 47275268 47275341 -54597828 + AT_rich Low_complexity Low_complexity 1 73 0 3010 161 21 16 chr13 47275659 47276219 -54596950 - MER50 LTR ERV1 -171 563 1 * 4873 159 33 25 chr13 47276219 47277084 -54596085 - Tigger1 DNA MER2_type -1546 872 1 2913 164 68 41 chr13 47277199 47277329 -54595840 - LTR29 LTR ERV1 0 622 497 1480 162 48 58 chr13 47277329 47277706 -54595463 - MER83C LTR ERV1 0 373 1 2913 164 68 41 chr13 47277706 47278179 -54594990 - LTR29 LTR ERV1 -125 497 3 537 162 8 124 chr13 47278312 47278380 -54594789 - MLT1A1 LTR MaLR 0 365 291 1898 145 42 0 chr13 47278380 47278663 -54594506 + AluSx SINE Alu 1 295 -17 537 162 8 124 chr13 47278663 47278729 -54594440 - MLT1A1 LTR MaLR -74 291 219 2264 102 0 10 chr13 47278729 47279032 -54594137 - AluSp SINE Alu -9 304 5 537 162 8 124 chr13 47279032 47279139 -54594030 - MLT1A1 LTR MaLR -146 219 55 2533 227 65 17 chr13 47279184 47279876 -54593293 + MER50 LTR ERV1 10 734 0 2847 103 42 7 chr13 47279957 47280343 -54592826 + MLT2A1 LTR ERVL 1 405 -39 390 21 0 0 chr13 47280343 47280390 -54592779 + (TG)n Simple_repeat Simple_repeat 2 48 0 2847 103 42 7 chr13 47280390 47280432 -54592737 + MLT2A1 LTR ERVL 405 444 0 14397 89 18 4 chr13 47280432 47282393 -54590776 + HERVL-A1 LTR ERVL 1 1989 -3665 5695 83 8 1 chr13 47282380 47283143 -54590026 + HERVL-A1 LTR ERVL 4887 5654 0 * 2628 111 25 10 chr13 47283143 47283541 -54589628 + MLT2A1 LTR ERVL 1 404 -40 431 228 4 11 chr13 47283552 47284010 -54589159 + (TA)n Simple_repeat Simple_repeat 1 455 0 254 86 0 0 chr13 47284010 47284045 -54589124 + MLT2A1 LTR ERVL 419 453 0 25 51 0 0 chr13 47284131 47284170 -54588999 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 47284191 47284212 -54588957 + AT_rich Low_complexity Low_complexity 1 21 0 891 161 7 7 chr13 47284333 47284482 -54588687 + MLT2A1 LTR ERVL 256 404 -40 549 188 6 43 chr13 47284494 47284849 -54588320 + (TA)n Simple_repeat Simple_repeat 1 341 0 254 86 0 0 chr13 47284849 47284884 -54588285 + MLT2A1 LTR ERVL 419 453 0 25 51 0 0 chr13 47284970 47285009 -54588160 + AT_rich Low_complexity Low_complexity 1 39 0 28 86 0 0 chr13 47285030 47285100 -54588069 + AT_rich Low_complexity Low_complexity 1 70 0 746 174 132 6 chr13 47286444 47286611 -54586558 + MER5A DNA MER1_type 2 189 0 22 35 0 0 chr13 47286696 47286725 -54586444 + AT_rich Low_complexity Low_complexity 1 29 0 2143 120 3 10 chr13 47288265 47288574 -54584595 + AluSc SINE Alu 1 307 -2 1697 197 96 57 chr13 47288823 47289300 -54583869 + MER67D LTR ERV1 9 504 -10 32 81 0 0 chr13 47289358 47289432 -54583737 + AT_rich Low_complexity Low_complexity 1 74 0 1969 75 7 25 chr13 47289451 47289730 -54583439 - AluY SINE Alu -3 308 35 4477 273 163 28 chr13 47289792 47290447 -54582722 + L1MA4 LINE L1 2275 2840 -3306 2595 48 0 13 chr13 47290447 47290762 -54582407 + AluY SINE Alu 1 311 0 4477 273 163 28 chr13 47290762 47291517 -54581652 + L1MA4 LINE L1 2840 3491 -2655 1935 143 23 7 chr13 47291517 47291824 -54581345 + AluSx SINE Alu 1 312 0 4477 273 163 28 chr13 47291824 47291853 -54581316 + L1MA4 LINE L1 3491 3515 -2631 234 0 0 0 chr13 47291853 47291879 -54581290 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 4477 273 163 28 chr13 47291879 47293136 -54580033 + L1MA4 LINE L1 3515 5339 -807 1039 129 75 0 chr13 47293125 47293311 -54579858 + L1PB4 LINE L1 5593 5792 -364 * 226 112 34 56 chr13 47293339 47293428 -54579741 + (TA)n Simple_repeat Simple_repeat 1 87 0 1912 162 31 8 chr13 47293431 47293790 -54579379 + L1PB4 LINE L1 5787 6153 -3 4928 175 24 10 chr13 47293817 47294788 -54578381 + L1MA4 LINE L1 5315 6298 -2 1558 76 0 102 chr13 47295760 47296024 -54577145 - AluY SINE Alu -20 291 55 5096 113 49 0 chr13 47296331 47297221 -54575948 - L1PA16 LINE L1 -7 6159 5232 216 0 0 0 chr13 47297655 47297679 -54575490 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2154 104 3 10 chr13 47297683 47297991 -54575178 - AluY SINE Alu -5 306 1 261 0 0 0 chr13 47298107 47298136 -54575033 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 1711 177 70 12 chr13 47299632 47299977 -54573192 - MLT1A1 LTR MaLR 0 365 1 1853 305 73 2 chr13 47303338 47303957 -54569212 + L1M3a LINE L1 1148 1810 -5278 2096 282 63 13 chr13 47303960 47304677 -54568492 + L1M4c LINE L1 1360 2112 -4976 989 89 0 0 chr13 47304677 47304800 -54568369 + AluSq/x SINE Alu 1 123 -190 241 65 0 0 chr13 47304800 47304885 -54568284 + AluSp/q SINE Alu 254 338 0 1122 263 17 41 chr13 47304889 47305363 -54567806 + L1M3a LINE L1 2046 2525 -4573 739 165 8 0 chr13 47305375 47305502 -54567667 + AluSg/x SINE Alu 169 296 -16 221 295 13 13 chr13 47305724 47305802 -54567367 + GA-rich Low_complexity Low_complexity 2 79 0 183 235 0 0 chr13 47305809 47305860 -54567309 + G-rich Low_complexity Low_complexity 4 54 0 1350 264 97 36 chr13 47306030 47306443 -54566726 + L1M4c LINE L1 2097 2483 -4684 1978 131 7 13 chr13 47306443 47306749 -54566420 + AluSc SINE Alu 1 304 -5 1350 264 97 36 chr13 47306749 47307533 -54565636 + L1M4c LINE L1 2483 3382 -3785 1478 236 13 35 chr13 47307533 47307906 -54565263 - MLT1A1 LTR MaLR 0 365 1 1350 264 97 36 chr13 47307906 47307954 -54565215 + L1M4c LINE L1 3382 3426 -3741 3946 203 15 39 chr13 47307974 47308641 -54564528 + L1M2 LINE L1 4327 5008 -1304 1432 198 31 3 chr13 47308641 47308934 -54564235 + AluJb SINE Alu 3 303 -9 3946 203 15 39 chr13 47308934 47309227 -54563942 + L1M2 LINE L1 5008 5306 -1006 2065 112 0 11 chr13 47309227 47309536 -54563633 + AluSg SINE Alu 2 307 0 3946 203 15 39 chr13 47309536 47310015 -54563154 + L1M2 LINE L1 5306 5735 -577 660 115 0 0 chr13 47310035 47310131 -54563038 + L1MA9 LINE L1 6170 6265 -47 918 137 0 16 chr13 47310206 47310388 -54562781 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 222 271 0 0 chr13 47310408 47310493 -54562676 + T-rich Low_complexity Low_complexity 96 180 0 24 32 0 0 chr13 47310771 47310802 -54562367 + AT_rich Low_complexity Low_complexity 1 31 0 2318 99 0 0 chr13 47311110 47311414 -54561755 - AluY SINE Alu -7 304 1 1232 160 68 151 chr13 47311437 47311662 -54561507 - MLT1B LTR MaLR -1 389 214 3259 215 19 13 chr13 47311662 47312360 -54560809 + MER44D DNA MER2_type 1 702 -3 1232 160 68 151 chr13 47312360 47312558 -54560611 - MLT1B LTR MaLR -176 214 1 254 282 178 25 chr13 47314599 47314762 -54558407 + MIR SINE MIR 70 257 -5 220 274 65 73 chr13 47315461 47315585 -54557584 + MIR SINE MIR 122 244 -18 26 0 0 27 chr13 47315930 47315955 -54557214 + AT_rich Low_complexity Low_complexity 1 26 -10 2014 108 32 0 chr13 47315955 47316232 -54556937 - AluSg SINE Alu -24 286 1 26 0 0 27 chr13 47316232 47316243 -54556926 + AT_rich Low_complexity Low_complexity 26 36 0 647 325 78 17 chr13 47316512 47316963 -54556206 + L2 LINE L2 2599 3073 -240 1747 175 0 3 chr13 47317253 47317538 -54555631 + AluJb SINE Alu 16 299 -13 227 226 19 0 chr13 47317538 47317591 -54555578 - LTR16A1 LTR ERVL -10 447 394 2147 78 0 63 chr13 47317733 47318065 -54555104 - AluY SINE Alu 0 311 1 388 191 71 0 chr13 47318073 47318157 -54555012 - MSTC LTR MaLR -338 90 1 26 30 0 0 chr13 47318327 47318360 -54554809 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 47318848 47318877 -54554292 + AT_rich Low_complexity Low_complexity 1 29 0 189 121 0 0 chr13 47319205 47319238 -54553931 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 68 0 0 chr13 47319289 47319333 -54553836 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 47319711 47319732 -54553437 + AT_rich Low_complexity Low_complexity 1 21 0 258 208 0 0 chr13 47320107 47320160 -54553009 + MIR SINE MIR 166 218 -44 1268 276 26 50 chr13 47321373 47321829 -54551340 - LTR16A1 LTR ERVL -9 448 4 275 350 0 8 chr13 47321950 47322070 -54551099 - L1MC/D LINE L1 -2132 5676 5558 337 301 114 38 chr13 47322074 47322310 -54550859 - L1MC/D LINE L1 -2294 5514 5261 21 0 0 0 chr13 47322477 47322498 -54550671 + AT_rich Low_complexity Low_complexity 1 21 0 25 75 0 0 chr13 47322778 47322831 -54550338 + AT_rich Low_complexity Low_complexity 1 53 0 342 0 0 0 chr13 47323181 47323219 -54549950 + (TA)n Simple_repeat Simple_repeat 1 38 0 2792 84 72 2 chr13 47324261 47324637 -54548532 + MLT2A1 LTR ERVL 1 410 -34 225 0 0 0 chr13 47324637 47324662 -54548507 + (TA)n Simple_repeat Simple_repeat 2 26 0 2792 84 72 2 chr13 47324662 47324700 -54548469 + MLT2A1 LTR ERVL 410 444 0 19565 82 8 0 chr13 47324715 47327287 -54545882 + HERVL-A1 LTR ERVL 3064 5654 0 2814 94 54 14 chr13 47327287 47327673 -54545496 + MLT2A1 LTR ERVL 1 407 -37 249 33 0 0 chr13 47327673 47327703 -54545466 + (TA)n Simple_repeat Simple_repeat 2 31 0 2814 94 54 14 chr13 47327703 47327741 -54545428 + MLT2A1 LTR ERVL 407 442 -2 21 0 0 0 chr13 47328208 47328229 -54544940 + AT_rich Low_complexity Low_complexity 1 21 0 1813 150 21 7 chr13 47329119 47329405 -54543764 - AluSx SINE Alu -18 294 5 30 83 0 0 chr13 47329477 47329549 -54543620 + AT_rich Low_complexity Low_complexity 1 72 0 25 0 0 0 chr13 47329600 47329625 -54543544 + AT_rich Low_complexity Low_complexity 1 25 0 478 323 77 13 chr13 47329730 47329965 -54543204 - MIR SINE MIR 0 262 13 1001 172 6 0 chr13 47330177 47330340 -54542829 + FRAM SINE Alu 1 160 -16 330 45 0 0 chr13 47330344 47330388 -54542781 + (TAAAA)n Simple_repeat Simple_repeat 5 48 0 27 0 0 0 chr13 47330859 47330886 -54542283 + AT_rich Low_complexity Low_complexity 1 27 0 1371 265 48 6 chr13 47330901 47331252 -54541917 + MER82 DNA MER2_type 288 653 0 22 0 0 0 chr13 47331260 47331282 -54541887 + AT_rich Low_complexity Low_complexity 1 22 0 1467 279 64 23 chr13 47332041 47332817 -54540352 + L1ME3 LINE L1 5208 6012 -150 308 81 54 14 chr13 47332919 47332993 -54540176 + T-rich Low_complexity Low_complexity 4 80 0 1545 203 0 24 chr13 47334084 47334379 -54538790 + AluJo SINE Alu 1 288 -24 1902 153 82 15 chr13 47334928 47335269 -54537900 + THE1B LTR MaLR 1 364 0 192 295 97 29 chr13 47335569 47335683 -54537486 - MIR3 SINE MIR -119 89 2 1650 250 35 57 chr13 47335741 47336390 -54536779 - L1ME2 LINE L1 -1 6163 5529 2013 70 66 15 chr13 47336623 47336896 -54536273 + AluSc SINE Alu 1 287 -22 3185 262 65 29 chr13 47337191 47338709 -54534460 + L1M4b LINE L1 656 2212 -4747 1929 129 3 7 chr13 47338805 47339091 -54534078 + AluSg SINE Alu 1 285 -25 25 0 0 0 chr13 47339091 47339116 -54534053 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr13 47339202 47339246 -54533923 + AT_rich Low_complexity Low_complexity 1 44 0 264 278 15 15 chr13 47339544 47339677 -54533492 + L1M4b LINE L1 2858 2990 -3967 6284 98 10 8 chr13 47339682 47341221 -54531948 - L1PA10 LINE L1 0 6168 4628 1663 259 50 23 chr13 47341271 47341926 -54531243 + L1M4b LINE L1 3032 3673 -3284 21 57 0 0 chr13 47342156 47342191 -54530978 + AT_rich Low_complexity Low_complexity 1 35 0 291 344 43 21 chr13 47342287 47342473 -54530696 - MLT1J2 LTR MaLR -228 222 33 2197 164 30 73 chr13 47343494 47343987 -54529182 - MER70A LTR ERVL 0 472 1 1055 280 24 10 chr13 47345002 47345291 -54527878 + MER119 DNA MER1_type 4 296 -287 6158 61 3 4 chr13 47345346 47346120 -54527049 - LTR17 LTR ERV1 -7 773 1 878 227 48 9 chr13 47346122 47346351 -54526818 + MER119 DNA MER1_type 345 582 -1 22 0 0 0 chr13 47346746 47346768 -54526401 + AT_rich Low_complexity Low_complexity 1 22 0 506 208 8 46 chr13 47347435 47347565 -54525604 + MLT2C1 LTR ERVL 18 142 -255 198 268 71 0 chr13 47348004 47348060 -54525109 - L3 LINE CR1 -990 587 528 192 125 0 0 chr13 47348155 47348187 -54524982 + (T)n Simple_repeat Simple_repeat 1 32 0 452 239 0 0 chr13 47348540 47348632 -54524537 - MLT1B LTR MaLR 0 390 299 3318 94 12 2 chr13 47348637 47349124 -54524045 - L1PA13 LINE L1 -5 6158 5667 2237 69 23 3 chr13 47349125 47349428 -54523741 + L1PA13 LINE L1 5369 5677 -486 874 246 95 21 chr13 47349428 47349713 -54523456 - MLT1B LTR MaLR -84 306 1 24 32 0 0 chr13 47351090 47351121 -54522048 + AT_rich Low_complexity Low_complexity 1 31 0 1850 207 77 164 chr13 47351423 47352624 -54520545 + MER52A LTR ERV1 660 1755 0 239 343 94 34 chr13 47352824 47353089 -54520080 - L2 LINE L2 -571 2743 2463 860 209 41 85 chr13 47353147 47353487 -54519682 - LTR37A LTR ERV1 -21 405 81 279 296 212 38 chr13 47353634 47353898 -54519271 - L2 LINE L2 -948 2366 2057 211 316 118 22 chr13 47354123 47354259 -54518910 - L2 LINE L2 -2925 389 241 29 28 0 0 chr13 47355757 47355793 -54517376 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr13 47355847 47355877 -54517292 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 47356145 47356172 -54516997 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 47356354 47356377 -54516792 + AT_rich Low_complexity Low_complexity 1 23 0 394 355 41 9 chr13 47356486 47356706 -54516463 - L2 LINE L2 -1215 2099 1873 733 273 101 14 chr13 47356857 47357205 -54515964 + Charlie4a DNA MER1_type 7 384 -124 1292 179 4 0 chr13 47357241 47357476 -54515693 - Tigger2 DNA MER2_type -32 2686 2451 4284 146 25 3 chr13 47357548 47358265 -54514904 - Tigger2 DNA MER2_type -1985 733 1 994 199 73 54 chr13 47358307 47358624 -54514545 - L1MD3 LINE L1 -81 7914 7592 734 254 82 16 chr13 47358622 47358878 -54514291 - L1MC3 LINE L1 -944 6841 6569 * 446 256 66 7 chr13 47358914 47359051 -54514118 + Charlie4a DNA MER1_type 364 508 0 208 354 0 35 chr13 47359058 47359202 -54513967 - L2 LINE L2 -1635 1679 1541 293 359 103 42 chr13 47359280 47359834 -54513335 - L2 LINE L2 -1911 1403 816 2813 208 29 3 chr13 47360125 47360774 -54512395 + L1MA8 LINE L1 4488 5153 -993 2007 169 48 77 chr13 47360910 47361453 -54511716 + L1MA8 LINE L1 5758 6284 -7 217 167 26 51 chr13 47361852 47361930 -54511239 + (TTATA)n Simple_repeat Simple_repeat 4 79 0 423 0 0 0 chr13 47362066 47362113 -54511056 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 33 43 0 0 chr13 47363091 47363138 -54510031 + AT_rich Low_complexity Low_complexity 1 47 0 33 25 0 0 chr13 47363205 47363245 -54509924 + AT_rich Low_complexity Low_complexity 1 40 0 1576 187 3 30 chr13 47363266 47363566 -54509603 + AluJb SINE Alu 12 303 -9 628 306 146 9 chr13 47363862 47364198 -54508971 + L2 LINE L2 1282 1663 -1651 484 310 33 22 chr13 47364269 47364453 -54508716 + L2 LINE L2 2821 3006 -307 28 61 0 0 chr13 47365194 47365243 -54507926 + AT_rich Low_complexity Low_complexity 1 49 0 4436 264 43 56 chr13 47365323 47366714 -54506455 + L1M4b LINE L1 10 1383 -5476 372 43 0 0 chr13 47366714 47366760 -54506409 + (CA)n Simple_repeat Simple_repeat 1 46 0 4436 264 43 56 chr13 47366760 47366801 -54506368 + L1M4b LINE L1 1383 1423 -5436 21 36 0 0 chr13 47367517 47367545 -54505624 + AT_rich Low_complexity Low_complexity 1 28 0 1396 169 126 90 chr13 47367555 47368000 -54505169 - LOR1b LTR ERV1 0 461 1 345 276 13 20 chr13 47368042 47368194 -54504975 + MER114 LTR ERV 17 167 -481 6371 181 40 25 chr13 47368302 47369018 -54504151 - L1 LINE L1 -2129 5436 4732 194 62 31 0 chr13 47369018 47369050 -54504119 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6371 181 40 25 chr13 47369050 47371068 -54502101 - L1 LINE L1 -2833 4732 2591 2241 121 47 0 chr13 47371068 47371407 -54501762 + THE1A LTR MaLR 1 355 0 8754 125 12 5 chr13 47371407 47372696 -54500473 + THE1A-int LTR MaLR 1 1298 -282 263 132 0 0 chr13 47372698 47372736 -54500433 + THE1A LTR MaLR 318 355 0 11724 229 44 12 chr13 47372736 47373549 -54499620 - L1 LINE L1 -4970 2595 1809 240 35 0 0 chr13 47373549 47373578 -54499591 + (TC)n Simple_repeat Simple_repeat 2 30 0 11724 229 44 12 chr13 47373578 47374863 -54498306 - L1 LINE L1 -5756 1809 402 2630 25 0 25 chr13 47374863 47375182 -54497987 - AluYa5 SINE Alu 0 311 1 11724 229 44 12 chr13 47375182 47375583 -54497586 - L1 LINE L1 -7163 402 15 22 70 0 0 chr13 47375796 47375839 -54497330 + AT_rich Low_complexity Low_complexity 1 43 0 3102 245 56 13 chr13 47375895 47376809 -54496360 + Charlie6 DNA MER1_type 675 1627 -1873 1548 216 22 35 chr13 47376821 47377192 -54495977 + L1M3e LINE L1 7 372 -6658 891 184 47 54 chr13 47377190 47377621 -54495548 + L1MC1 LINE L1 4339 6326 -7 * 995 217 13 21 chr13 47377637 47377872 -54495297 + L1MC3 LINE L1 7461 7693 -92 365 340 26 26 chr13 47377875 47378028 -54495141 - MIR SINE MIR -71 191 39 225 260 0 59 chr13 47378030 47378199 -54494970 + A-rich Low_complexity Low_complexity 1 159 0 22 0 0 0 chr13 47378240 47378262 -54494907 + AT_rich Low_complexity Low_complexity 1 22 0 199 333 111 33 chr13 47378778 47378931 -54494238 - MIR SINE MIR -50 212 48 360 111 0 0 chr13 47380928 47380982 -54492187 + (TA)n Simple_repeat Simple_repeat 2 55 0 1924 218 19 58 chr13 47381212 47381744 -54491425 - MER67D LTR ERV1 0 514 4 262 309 24 41 chr13 47383597 47383720 -54489449 + L2 LINE L2 2638 2758 -556 1714 113 0 4 chr13 47384431 47384669 -54488500 - AluSc SINE Alu 0 309 73 4890 92 27 7 chr13 47384671 47384785 -54488384 - LTR30 LTR ERV1 0 722 612 5839 79 3 8 chr13 47384785 47385569 -54487600 - LTR17 LTR ERV1 0 780 1 4890 92 27 7 chr13 47385569 47386162 -54487007 - LTR30 LTR ERV1 -110 612 1 430 149 0 0 chr13 47386162 47386236 -54486933 - AluSc SINE Alu -236 74 1 1276 180 173 4 chr13 47386710 47386988 -54486181 - MER7A DNA MER2_type 0 346 24 29 47 0 0 chr13 47387537 47387580 -54485589 + AT_rich Low_complexity Low_complexity 1 43 0 1350 226 58 51 chr13 47388087 47388480 -54484689 + MSTD LTR MaLR 1 396 0 198 171 0 0 chr13 47388713 47388754 -54484415 + (TTA)n Simple_repeat Simple_repeat 3 43 0 25 31 0 0 chr13 47389342 47389374 -54483795 + AT_rich Low_complexity Low_complexity 1 32 0 333 0 0 0 chr13 47390321 47390358 -54482811 + (TG)n Simple_repeat Simple_repeat 2 38 0 28 48 0 0 chr13 47390602 47390644 -54482525 + AT_rich Low_complexity Low_complexity 1 42 0 381 282 30 15 chr13 47391054 47391185 -54481984 - MIR SINE MIR -12 250 118 21 36 0 0 chr13 47391251 47391279 -54481890 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 47391345 47391374 -54481795 + AT_rich Low_complexity Low_complexity 1 29 0 3572 155 41 9 chr13 47391613 47392246 -54480923 + MER39B LTR ERV1 1 653 0 188 413 43 0 chr13 47392681 47392773 -54480396 + L2 LINE L2 3166 3261 -11 762 199 27 14 chr13 47393201 47393347 -54479822 - AluJb SINE Alu -31 281 134 2015 120 0 3 chr13 47393759 47394078 -54479091 - AluY SINE Alu 0 318 1 22 0 0 0 chr13 47394984 47395006 -54478163 + AT_rich Low_complexity Low_complexity 1 22 0 1733 178 24 42 chr13 47395959 47396341 -54476828 + THE1C LTR MaLR 1 375 0 8033 137 75 50 chr13 47396341 47397882 -54475287 + THE1C-int LTR MaLR 1 1580 0 1545 159 41 38 chr13 47397882 47398197 -54474972 + THE1C LTR MaLR 1 316 -59 1824 142 25 0 chr13 47398197 47398471 -54474698 + AluSx SINE Alu 1 281 -31 234 229 0 0 chr13 47398568 47398616 -54474553 - L2 LINE L2 -12 3260 3213 23 0 0 0 chr13 47399369 47399392 -54473777 + AT_rich Low_complexity Low_complexity 1 23 0 194 313 193 23 chr13 47399700 47399876 -54473293 + L2 LINE L2 3015 3220 -93 1946 196 57 67 chr13 47399876 47400359 -54472810 + MLT2B1 LTR ERVL 1 480 -40 525 38 38 0 chr13 47400359 47400439 -54472730 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 1946 196 57 67 chr13 47400439 47400480 -54472689 + MLT2B1 LTR ERVL 480 520 0 421 231 29 87 chr13 47401118 47401291 -54471878 - L1ME3 LINE L1 -7 6155 5993 31 26 0 0 chr13 47401447 47401485 -54471684 + AT_rich Low_complexity Low_complexity 1 38 0 1413 250 19 3 chr13 47401765 47402085 -54471084 - MLT1A1 LTR MaLR -3 362 38 2089 106 36 3 chr13 47402363 47402664 -54470505 - AluSx SINE Alu 0 312 2 348 246 45 8 chr13 47402844 47402978 -54470191 - L1 LINE L1 -1479 4667 4529 2833 169 28 35 chr13 47402984 47403551 -54469618 - L1MC1 LINE L1 -225 6108 5546 933 161 0 25 chr13 47404041 47404203 -54468966 - FRAM SINE Alu -10 166 9 48 32 0 0 chr13 47404474 47404536 -54468633 + AT_rich Low_complexity Low_complexity 1 62 0 2065 129 0 0 chr13 47404639 47404925 -54468244 - AluY SINE Alu -25 286 1 258 32 0 0 chr13 47405016 47405047 -54468122 + (CA)n Simple_repeat Simple_repeat 1 31 0 333 333 0 29 chr13 47405305 47405410 -54467759 + MER91A DNA MER1_type 87 188 -8 607 324 36 24 chr13 47405666 47405913 -54467256 - MIR SINE MIR -11 251 2 7501 197 118 4 chr13 47405917 47407493 -54465676 + MER52A LTR ERV1 1 1755 0 255 365 75 13 chr13 47407537 47407696 -54465473 - MIR SINE MIR -78 184 16 214 295 0 64 chr13 47408033 47408189 -54464980 + A-rich Low_complexity Low_complexity 5 150 0 1834 107 8 0 chr13 47408423 47408667 -54464502 - AluSx SINE Alu -17 295 50 2768 7 0 0 chr13 47411137 47411441 -54461728 - AluY SINE Alu -7 304 1 22 35 0 0 chr13 47411516 47411545 -54461624 + AT_rich Low_complexity Low_complexity 1 29 0 1747 157 0 47 chr13 47411673 47411973 -54461196 - AluSx SINE Alu -26 286 1 388 195 0 11 chr13 47412995 47413082 -54460087 - L1MB3 LINE L1 -1 6182 6097 246 229 48 48 chr13 47414831 47414914 -54458255 + L2 LINE L2 3189 3271 -1 1269 174 5 0 chr13 47415461 47415673 -54457496 + AluJb SINE Alu 86 298 -14 25 90 0 0 chr13 47415919 47415986 -54457183 + AT_rich Low_complexity Low_complexity 1 67 0 401 296 71 91 chr13 47417230 47417639 -54455530 + HAL1 LINE L1 742 1142 -1365 340 281 78 0 chr13 47417885 47418013 -54455156 + L1MEd LINE L1 895 1032 -5087 359 264 122 79 chr13 47418228 47418622 -54454547 + HAL1 LINE L1 1203 1613 -894 395 281 82 33 chr13 47418920 47419296 -54453873 + HAL1 LINE L1 2108 2501 -6 5787 218 44 23 chr13 47419317 47419439 -54453730 - L1 LINE L1 -990 5156 5038 2091 120 40 29 chr13 47419439 47419790 -54453379 - THE1A LTR MaLR 0 355 1 10702 106 24 0 chr13 47419790 47421333 -54451836 - THE1A-int LTR MaLR 0 1580 1 2045 115 14 47 chr13 47421333 47421698 -54451471 - THE1A LTR MaLR 0 355 3 5787 218 44 23 chr13 47421698 47423152 -54450017 - L1 LINE L1 -1107 5039 3545 1157 133 0 0 chr13 47423155 47423320 -54449849 + AluSg/x SINE Alu 137 301 -11 281 133 0 0 chr13 47423320 47423365 -54449804 - L1P LINE L1 -2601 3545 3501 1467 276 10 38 chr13 47423602 47423994 -54449175 - MER70A LTR ERVL -2 470 90 524 282 74 7 chr13 47423993 47424082 -54449087 - MER70A LTR ERVL -313 159 55 * 216 0 0 0 chr13 47424082 47424106 -54449063 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 524 282 74 7 chr13 47424106 47424165 -54449004 - MER70A LTR ERVL -417 55 1 21 0 0 0 chr13 47425263 47425284 -54447885 + AT_rich Low_complexity Low_complexity 1 21 0 256 224 178 19 chr13 47425309 47425416 -54447753 - L2 LINE L2 0 3313 3190 325 202 99 0 chr13 47425425 47425515 -54447654 - MLT1J1 LTR MaLR -6 440 349 1656 179 55 12 chr13 47426487 47426816 -54446353 - MER61A LTR ERV1 0 343 1 574 299 145 31 chr13 47427317 47427747 -54445422 - L2 LINE L2 -125 3188 2714 3931 252 37 8 chr13 47427751 47428671 -54444498 - L1MC4a LINE L1 -29 7779 6822 261 0 0 0 chr13 47428671 47428700 -54444469 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3931 252 37 8 chr13 47428700 47428871 -54444298 - L1MC4a LINE L1 -986 6822 6657 486 199 38 30 chr13 47428876 47429007 -54444162 - FLAM_C SINE Alu 0 133 2 426 20 0 0 chr13 47429035 47429086 -54444083 + (CA)n Simple_repeat Simple_repeat 2 52 0 720 172 66 0 chr13 47429170 47429321 -54443848 + AluSg/x SINE Alu 136 296 -16 22 35 0 0 chr13 47430323 47430352 -54442817 + AT_rich Low_complexity Low_complexity 1 29 0 360 64 0 0 chr13 47431074 47431121 -54442048 + (CA)n Simple_repeat Simple_repeat 1 47 0 623 311 146 17 chr13 47431501 47431858 -54441311 + L2 LINE L2 2911 3313 0 21 0 0 0 chr13 47433060 47433081 -54440088 + AT_rich Low_complexity Low_complexity 1 21 0 3846 128 167 17 chr13 47433158 47433995 -54439174 + pTR5 LTR ERV1 270 2606 0 2506 209 33 29 chr13 47435917 47436548 -54436621 - LTR27 LTR ERV1 0 636 3 2344 67 3 0 chr13 47436871 47437169 -54436000 - AluY SINE Alu -12 299 1 572 275 6 25 chr13 47437675 47437835 -54435334 - MER77 LTR ERV1 -4 601 445 666 197 0 42 chr13 47437836 47437876 -54435293 - FLAM_C SINE Alu -174 138 98 4160 119 11 0 chr13 47437876 47438504 -54434665 - MER41B LTR ERV1 0 635 1 666 197 0 42 chr13 47438504 47438605 -54434564 - FLAM_C SINE Alu -214 98 3 309 300 29 77 chr13 47438653 47439060 -54434109 - MER77 LTR ERV1 -214 391 22 1880 127 0 50 chr13 47439918 47440248 -54432921 - AluSq SINE Alu 0 315 1 5199 196 20 11 chr13 47440532 47440615 -54432554 - L1PA15 LINE L1 -2 6163 6082 1644 160 4 0 chr13 47440615 47440871 -54432298 - AluSx SINE Alu -27 285 29 5199 196 20 11 chr13 47440871 47442724 -54430445 - L1PA15 LINE L1 -83 6082 4212 6491 215 14 8 chr13 47442724 47444163 -54429006 + L1PA15 LINE L1 2792 4238 -1908 2101 125 0 0 chr13 47444748 47445043 -54428126 - AluSq SINE Alu -15 298 4 28 79 0 0 chr13 47445046 47445109 -54428060 + AT_rich Low_complexity Low_complexity 1 63 0 916 345 22 34 chr13 47445483 47445929 -54427240 + L1M3a LINE L1 12 452 -5503 325 363 92 23 chr13 47446188 47446604 -54426565 + L1M3a LINE L1 306 782 -5173 2286 288 47 18 chr13 47446626 47448198 -54424971 + L1M3a LINE L1 345 1770 -4265 2086 123 0 0 chr13 47448198 47448521 -54424648 + AluSx SINE Alu 1 323 0 2286 288 47 18 chr13 47448521 47448629 -54424540 + L1M3a LINE L1 1770 1873 -4162 33 85 0 0 chr13 47448663 47448745 -54424424 + AT_rich Low_complexity Low_complexity 1 82 0 447 306 62 48 chr13 47448814 47449248 -54423921 - L1M4 LINE L1 -1333 4813 4374 566 318 130 20 chr13 47449736 47450035 -54423134 + MLT1I LTR MaLR 70 401 -8 335 339 85 34 chr13 47450248 47450484 -54422685 + L2 LINE L2 2837 3084 -188 27 29 0 0 chr13 47451298 47451332 -54421837 + AT_rich Low_complexity Low_complexity 1 34 0 3058 188 31 73 chr13 47451700 47452497 -54420672 - L1MA7 LINE L1 -10 6281 5518 260 329 0 0 chr13 47452515 47452585 -54420584 + L2 LINE L2 3242 3311 -2 257 236 45 0 chr13 47452679 47452768 -54420401 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 24 67 0 0 chr13 47452808 47452853 -54420316 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr13 47454018 47454042 -54419127 + AT_rich Low_complexity Low_complexity 1 24 0 629 271 29 29 chr13 47454646 47454856 -54418313 - LTR16C LTR ERVL -9 482 273 200 238 0 0 chr13 47456110 47456152 -54417017 + (TA)n Simple_repeat Simple_repeat 2 43 0 190 335 93 6 chr13 47459023 47459184 -54413985 - L2 LINE L2 -925 2389 2215 189 171 0 0 chr13 47459249 47459284 -54413885 + (CA)n Simple_repeat Simple_repeat 2 36 0 351 244 0 0 chr13 47459360 47459450 -54413719 + L1MC4 LINE L1 6614 6703 -1339 1960 104 19 0 chr13 47459485 47459755 -54413414 - AluSx SINE Alu -17 295 21 194 200 138 12 chr13 47460005 47460085 -54413084 - L3 LINE CR1 -653 924 835 192 189 0 27 chr13 47460385 47460422 -54412747 + MIR SINE MIR 216 251 -11 22 35 0 0 chr13 47460825 47460854 -54412315 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 47462569 47462595 -54410574 + AT_rich Low_complexity Low_complexity 1 26 0 2639 317 176 18 chr13 47462612 47463769 -54409400 - L2 LINE L2 -541 2773 1284 2049 105 20 3 chr13 47463769 47464065 -54409104 + AluSc SINE Alu 1 301 -8 2639 317 176 18 chr13 47464065 47464527 -54408642 - L2 LINE L2 -2030 1284 897 2197 102 0 22 chr13 47464988 47465303 -54407866 - AluY SINE Alu -3 308 1 203 355 58 36 chr13 47465340 47465478 -54407691 - MIR SINE MIR -74 188 48 355 284 52 77 chr13 47465862 47466056 -54407113 - MER93a LTR ERV1 -16 386 198 389 251 61 52 chr13 47466106 47466281 -54406888 - MER93a LTR ERV1 -216 187 10 21 57 0 0 chr13 47469411 47469446 -54403723 + AT_rich Low_complexity Low_complexity 1 35 0 331 211 98 18 chr13 47469974 47470137 -54403032 - HsTC2 DNA Tc2 -2 1896 5 1576 251 45 57 chr13 47470774 47471335 -54401834 - MLT2B2 LTR ERVL 0 554 1 276 313 80 0 chr13 47471584 47471696 -54401473 - LTR16C LTR ERVL -8 483 363 232 271 0 0 chr13 47472150 47472198 -54400971 + A-rich Low_complexity Low_complexity 3 50 0 604 356 43 23 chr13 47472434 47472827 -54400342 - ERVL LTR ERVL -2130 3634 3234 22 35 0 0 chr13 47473756 47473785 -54399384 + AT_rich Low_complexity Low_complexity 1 29 0 328 320 130 83 chr13 47473907 47474354 -54398815 + MLT1K LTR MaLR 94 561 -27 206 379 53 30 chr13 47477287 47477419 -54395750 - L2 LINE L2 0 3272 3138 23 33 0 0 chr13 47478693 47478723 -54394446 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr13 47479576 47479612 -54393557 + AT_rich Low_complexity Low_complexity 1 36 0 578 265 72 17 chr13 47480031 47480212 -54392957 - MIR3 SINE MIR -3 205 15 324 304 0 0 chr13 47480219 47480321 -54392848 + L1MC4 LINE L1 6614 6715 -1327 268 213 66 33 chr13 47481725 47481847 -54391322 - MER5C DNA MER1_type -1 323 198 747 180 6 66 chr13 47481852 47481877 -54391292 - L1 LINE L1 -1317 4829 4804 2816 164 20 6 chr13 47481877 47482424 -54390745 - L1MA8 LINE L1 -4 6287 5733 747 180 6 66 chr13 47482424 47482581 -54390588 - L1 LINE L1 -1342 4804 4658 34 42 0 0 chr13 47482922 47482970 -54390199 + AT_rich Low_complexity Low_complexity 1 48 0 1499 220 0 7 chr13 47483296 47483601 -54389568 - AluJo SINE Alu -7 305 3 464 246 42 0 chr13 47483806 47483924 -54389245 - MER5C DNA MER1_type -200 124 2 230 222 0 37 chr13 47484647 47484701 -54388468 + MLT1L LTR MaLR 457 508 -107 23 54 0 0 chr13 47484961 47484998 -54388171 + AT_rich Low_complexity Low_complexity 1 37 0 248 190 0 52 chr13 47484998 47485056 -54388113 - HAL1 LINE L1 -919 1588 1534 386 311 46 33 chr13 47485413 47485654 -54387515 - L1MEd LINE L1 -5279 840 597 25 51 0 0 chr13 47486114 47486153 -54387016 + AT_rich Low_complexity Low_complexity 1 39 0 405 70 0 0 chr13 47486366 47486423 -54386746 + (CA)n Simple_repeat Simple_repeat 2 58 0 1052 222 18 107 chr13 47487763 47488164 -54385005 + MLT1A1 LTR MaLR 1 365 0 2349 159 3 0 chr13 47489946 47490318 -54382851 + LTR57 LTR ERVL 1 373 -38 261 0 0 0 chr13 47490738 47490767 -54382402 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 314 96 0 19 chr13 47490766 47490818 -54382351 + (TA)n Simple_repeat Simple_repeat 2 52 0 2332 83 3 0 chr13 47490979 47491314 -54381855 + AluY SINE Alu 1 336 0 28 111 0 0 chr13 47492255 47492381 -54380788 + AT_rich Low_complexity Low_complexity 1 126 0 23 0 0 0 chr13 47492554 47492577 -54380592 + AT_rich Low_complexity Low_complexity 1 23 0 7275 131 21 8 chr13 47492661 47494647 -54378522 - L1PA10 LINE L1 -1 6167 4155 7359 132 3 21 chr13 47494654 47495923 -54377246 - L1PA10 LINE L1 -2176 3970 2725 787 280 67 97 chr13 47495923 47496419 -54376750 + L2 LINE L2 2831 3311 -2 388 95 102 0 chr13 47498470 47498607 -54374562 + (TA)n Simple_repeat Simple_repeat 1 151 0 314 311 11 0 chr13 47498639 47498729 -54374440 + L2 LINE L2 2881 2971 -343 1526 201 69 56 chr13 47499421 47499880 -54373289 - MER31B LTR ERV1 0 661 3 235 256 12 24 chr13 47499889 47499971 -54373198 + L2 LINE L2 2328 2408 -906 1454 191 24 38 chr13 47500106 47500399 -54372770 - AluJb SINE Alu -19 293 5 1012 258 84 3 chr13 47500513 47501059 -54372110 - L1MDa LINE L1 -3597 2809 2226 1326 235 32 18 chr13 47501095 47501495 -54371674 - L1MDa LINE L1 -4616 1790 1385 490 229 379 0 chr13 47501495 47501635 -54371534 + Tigger5 DNA MER2_type 2 194 -2129 298 190 35 0 chr13 47501632 47501690 -54371479 + Tigger5 DNA MER2_type 2244 2303 -20 * 580 235 81 18 chr13 47501705 47501926 -54371243 - L1MDa LINE L1 -5011 1398 1164 5002 190 35 14 chr13 47501928 47502432 -54370737 - L1MC2 LINE L1 -9 6335 5843 1625 190 55 6 chr13 47502432 47502780 -54370389 - MLT1A1 LTR MaLR 0 365 1 5002 190 35 14 chr13 47502780 47503428 -54369741 - L1MC2 LINE L1 -501 5843 5164 1331 232 12 18 chr13 47503432 47503764 -54369405 - L1MB8 LINE L1 -37 6141 5812 3311 255 80 48 chr13 47503811 47504829 -54368340 - L1MDa LINE L1 -5233 1176 117 2177 158 64 12 chr13 47504829 47505234 -54367935 - MSTB LTR MaLR 0 426 1 3311 255 80 48 chr13 47505234 47505355 -54367814 - L1MDa LINE L1 -6292 117 1 1947 114 32 11 chr13 47505518 47505799 -54367370 + AluSp SINE Alu 1 287 -26 650 275 127 33 chr13 47507196 47507602 -54365567 + MLT1E LTR MaLR 1 526 -67 293 272 11 54 chr13 47507733 47507825 -54365344 - MLT1J LTR MaLR -74 437 350 3321 190 13 9 chr13 47509238 47510496 -54362673 + L1MA9 LINE L1 4999 6312 0 264 217 108 12 chr13 47513140 47513223 -54359946 + L2 LINE L2 3223 3313 0 935 36 0 0 chr13 47514925 47515037 -54358132 - L1PA3 LINE L1 -3 6152 6041 23 54 0 0 chr13 47515350 47515387 -54357782 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr13 47515621 47515667 -54357502 + AT_rich Low_complexity Low_complexity 1 46 0 454 352 75 24 chr13 47515686 47516058 -54357111 + L1ME3A LINE L1 5259 5649 -472 13426 161 32 3 chr13 47516080 47518420 -54354749 - Tigger1 DNA MER2_type -11 2407 1 228 86 0 0 chr13 47518628 47518663 -54354506 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 47521384 47521405 -54351764 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 47521510 47521534 -54351635 + AT_rich Low_complexity Low_complexity 1 24 0 751 200 18 0 chr13 47521606 47521771 -54351398 + L1MB5 LINE L1 5999 6166 -8 1155 225 52 21 chr13 47522261 47522586 -54350583 + L1ME3A LINE L1 5767 6101 -69 29 0 0 0 chr13 47522772 47522801 -54350368 + AT_rich Low_complexity Low_complexity 1 29 0 7725 89 9 2 chr13 47522809 47524683 -54348486 - L1PA8 LINE L1 -45 6127 4244 2808 118 0 2 chr13 47524682 47525097 -54348072 + L1P LINE L1 3917 4330 -1816 * 762 250 45 36 chr13 47525931 47526121 -54347048 + L1MC5 LINE L1 7045 7241 -720 381 22 0 0 chr13 47526121 47526167 -54347002 + (CA)n Simple_repeat Simple_repeat 1 46 0 762 250 45 36 chr13 47526167 47526312 -54346857 + L1MC5 LINE L1 7241 7383 -578 3136 223 101 53 chr13 47526348 47526894 -54346275 + Charlie1a DNA MER1_type 39 557 -2204 5106 63 100 30 chr13 47526894 47527623 -54345546 + LTR17 LTR ERV1 1 780 0 3136 223 101 53 chr13 47527623 47528427 -54344742 + Charlie1a DNA MER1_type 557 1454 -1 270 354 54 45 chr13 47528481 47528795 -54344374 + MLT1H LTR MaLR 29 345 -204 227 333 27 20 chr13 47529158 47529308 -54343861 + L1MC5 LINE L1 7785 7935 -26 26 0 0 0 chr13 47530608 47530634 -54342535 + AT_rich Low_complexity Low_complexity 1 26 0 205 228 24 16 chr13 47531248 47531371 -54341798 + (TA)n Simple_repeat Simple_repeat 1 124 0 484 276 86 13 chr13 47531713 47531865 -54341304 - MIR SINE MIR -10 252 90 1952 105 6 105 chr13 47531879 47532221 -54340948 + AluSx SINE Alu 1 308 -4 299 328 50 109 chr13 47532255 47532493 -54340676 - L2 LINE L2 -41 3231 3008 778 278 87 28 chr13 47533527 47533815 -54339354 + L2 LINE L2 3009 3313 0 213 244 222 0 chr13 47533861 47533951 -54339218 - MER5A DNA MER1_type -1 188 79 205 271 52 52 chr13 47535097 47535193 -54337976 - MIR SINE MIR -6 256 161 2926 3 0 3 chr13 47535844 47536163 -54337006 + AluYb8 SINE Alu 1 318 0 1472 179 10 55 chr13 47536233 47536541 -54336628 + AluJb SINE Alu 3 296 -16 1147 214 26 71 chr13 47536554 47536862 -54336307 + AluJb SINE Alu 1 294 -8 1092 213 13 0 chr13 47537007 47537242 -54335927 - L1 LINE L1 -1815 4331 4094 * 7776 124 37 8 chr13 47537240 47538530 -54334639 - L1PBa LINE L1 -4276 2587 1260 4357 199 65 12 chr13 47538551 47539545 -54333624 - L1PBa LINE L1 -5814 1049 3 450 191 196 18 chr13 47539721 47539889 -54333280 + MER5C DNA MER1_type 127 324 0 969 253 163 46 chr13 47540879 47541282 -54331887 + MLT2B2 LTR ERVL 8 471 -44 414 0 0 0 chr13 47541282 47541328 -54331841 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 969 253 163 46 chr13 47541328 47541379 -54331790 + MLT2B2 LTR ERVL 471 515 0 1051 204 19 0 chr13 47541558 47541769 -54331400 + MLT1B LTR MaLR 1 215 -175 849 198 49 56 chr13 47541769 47542057 -54331112 + pTR5 LTR ERV1 743 1028 -1410 3915 104 215 22 chr13 47542136 47542828 -54330341 + LTR12 LTR ERV1 1 826 0 566 188 88 65 chr13 47542831 47543001 -54330168 + MLT1B LTR MaLR 217 390 0 29 0 0 0 chr13 47543091 47543120 -54330049 + AT_rich Low_complexity Low_complexity 1 29 0 1247 326 25 33 chr13 47594597 47595328 -54277841 + L1PBa LINE L1 698 1422 -5441 668 252 0 7 chr13 47595322 47595465 -54277704 + L1PBa LINE L1 758 899 -5964 * 524 350 4 9 chr13 47595466 47595692 -54277477 + L1PBa LINE L1 1415 1639 -5224 508 292 0 0 chr13 47595659 47595789 -54277380 + L1PBb LINE L1 4 133 -6071 * 1582 119 0 4 chr13 47595901 47596153 -54277016 - L1MA3 LINE L1 -1 6304 6054 9950 171 8 2 chr13 47596222 47596710 -54276459 - L1PA11 LINE L1 0 6174 5690 2267 81 0 0 chr13 47596710 47597026 -54276143 + AluY SINE Alu 1 316 0 9950 171 8 2 chr13 47597026 47599174 -54273995 - L1PA11 LINE L1 -484 5690 3544 22 35 0 0 chr13 47600710 47600739 -54272430 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 47600847 47600868 -54272301 + AT_rich Low_complexity Low_complexity 1 21 0 305 309 40 34 chr13 47601606 47601755 -54271414 + L2 LINE L2 3160 3309 -4 358 368 24 14 chr13 47602252 47602461 -54270708 + MLT1I LTR MaLR 196 406 -3 258 164 284 0 chr13 47603110 47603177 -54269992 + MLT1H LTR MaLR 421 506 -43 1061 213 112 20 chr13 47603190 47603547 -54269622 - MLT1B LTR MaLR 0 390 1 2305 101 7 0 chr13 47603671 47603978 -54269191 + AluSx SINE Alu 2 310 -2 332 129 71 24 chr13 47604157 47604242 -54268927 - L1MA9 LINE L1 -7 6305 6217 514 251 44 49 chr13 47604293 47604496 -54268673 + LTR52 LTR ERVL 15 216 -205 4011 291 81 66 chr13 47604608 47606786 -54266383 + LTR52-int LTR ERVL 1 2220 -1336 234 0 0 0 chr13 47606786 47606812 -54266357 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4011 291 81 66 chr13 47606812 47607040 -54266129 + LTR52-int LTR ERVL 2220 2443 -1113 473 342 40 10 chr13 47607052 47607254 -54265915 + LTR52-int LTR ERVL 2806 3013 -543 234 281 89 33 chr13 47607255 47607558 -54265611 - L1MEd LINE L1 -3651 2478 2159 29 0 0 0 chr13 47607565 47607594 -54265575 + AT_rich Low_complexity Low_complexity 1 29 0 331 263 59 17 chr13 47608161 47608279 -54264890 - HAL1 LINE L1 -866 1641 1519 347 315 61 80 chr13 47608366 47608693 -54264476 - L1MEd LINE L1 -4875 1244 924 192 358 49 16 chr13 47609076 47609199 -54263970 + L2 LINE L2 2911 3037 -276 263 164 60 45 chr13 47609352 47609419 -54263750 - L1MC1 LINE L1 -1 6332 6265 1510 266 66 114 chr13 47609423 47609775 -54263394 + MER44D DNA MER2_type 1 369 -2118 1883 124 46 62 chr13 47609775 47610102 -54263067 + THE1B LTR MaLR 1 323 -41 2200 119 3 0 chr13 47610102 47610414 -54262755 - AluSq SINE Alu 0 313 1 1883 124 46 62 chr13 47610414 47610456 -54262713 + THE1B LTR MaLR 323 364 0 1510 266 66 114 chr13 47610456 47610589 -54262580 + MER44D DNA MER2_type 369 511 -1976 2329 153 33 30 chr13 47610589 47611019 -54262150 + Tigger2a DNA MER2_type 3 433 -1 1510 266 66 114 chr13 47611019 47611110 -54262059 + MER44D DNA MER2_type 511 605 0 2604 208 44 20 chr13 47611112 47612290 -54260879 - L1MC1 LINE L1 -73 6260 4810 2437 67 0 0 chr13 47612776 47613074 -54260095 - AluSg SINE Alu -12 298 1 21 0 0 0 chr13 47614095 47614116 -54259053 + AT_rich Low_complexity Low_complexity 1 21 0 281 219 14 0 chr13 47615354 47615427 -54257742 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 602 241 29 6 chr13 47615759 47615933 -54257236 - MER5B DNA MER1_type 0 178 1 207 260 0 0 chr13 47616758 47616808 -54256361 + (CA)n Simple_repeat Simple_repeat 2 51 0 408 308 8 0 chr13 47617615 47617735 -54255434 - L2 LINE L2 0 3313 3193 25 0 0 0 chr13 47618148 47618173 -54254996 + AT_rich Low_complexity Low_complexity 1 25 0 2026 313 133 42 chr13 47618720 47620143 -54253026 + L2 LINE L2 492 2045 -1269 347 360 5 25 chr13 47621742 47621942 -54251227 + L2 LINE L2 2038 2233 -1081 246 267 237 0 chr13 47622481 47622616 -54250553 + MIR SINE MIR 83 249 -13 237 323 8 23 chr13 47623639 47623772 -54249397 - MER52A LTR ERV1 -17 1738 1608 232 216 0 126 chr13 47623799 47623910 -54249259 - MER52A LTR ERV1 -296 1459 1363 897 287 3 28 chr13 47623961 47624250 -54248919 - LTR28 LTR ERV1 -302 718 437 * 988 210 19 130 chr13 47624218 47624580 -54248589 - MER52A LTR ERV1 -784 971 650 22 0 0 0 chr13 47625151 47625173 -54247996 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr13 47626513 47626555 -54246614 + AT_rich Low_complexity Low_complexity 1 42 0 310 303 54 5 chr13 47627433 47627618 -54245551 + L1M4 LINE L1 4657 4850 -1296 234 81 0 0 chr13 47627621 47627658 -54245511 + (TC)n Simple_repeat Simple_repeat 2 38 0 351 44 0 0 chr13 47627818 47627863 -54245306 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr13 47629492 47629520 -54243649 + AT_rich Low_complexity Low_complexity 1 28 0 453 19 0 0 chr13 47631064 47631118 -54242051 + (CA)n Simple_repeat Simple_repeat 2 55 0 215 103 26 0 chr13 47631409 47631448 -54241721 + CT-rich Low_complexity Low_complexity 1 40 0 207 186 0 0 chr13 47631447 47631490 -54241679 + (CA)n Simple_repeat Simple_repeat 1 43 0 * 306 281 56 11 chr13 47631508 47631597 -54241572 - L2 LINE L2 -16 3297 3205 283 296 61 9 chr13 47632418 47632533 -54240636 + MIR SINE MIR 66 186 -76 11666 146 26 11 chr13 47633128 47635253 -54237916 - Tigger4(Zombi) DNA MER2_type -4 2727 570 4622 143 46 117 chr13 47635456 47636637 -54236532 - Tigger4(Zombi) DNA MER2_type -1633 1098 2 193 347 42 0 chr13 47637077 47637172 -54235997 + MIR SINE MIR 91 189 -73 300 258 32 0 chr13 47637202 47637295 -54235874 - L1MC5 LINE L1 -36 7925 7830 447 19 0 0 chr13 47637892 47637944 -54235225 + (CA)n Simple_repeat Simple_repeat 2 53 0 245 320 0 0 chr13 47638149 47638252 -54234917 - L1MC/D LINE L1 -2027 5781 5679 328 303 171 46 chr13 47638400 47638681 -54234488 + LTR67 LTR ERVL 110 425 -132 387 335 13 46 chr13 47638755 47639017 -54234152 - L1MC/D LINE L1 -716 5448 5194 2367 55 3 0 chr13 47639517 47639810 -54233359 - AluY SINE Alu -17 294 1 186 43 0 0 chr13 47639822 47639845 -54233324 + (T)n Simple_repeat Simple_repeat 1 23 0 401 230 75 46 chr13 47640085 47640259 -54232910 - LTR41 LTR ERVL -592 181 3 226 176 54 40 chr13 47640889 47640963 -54232206 + Charlie8 DNA MER1_type 79 153 -2264 2919 47 8 3 chr13 47641057 47641420 -54231749 - L1PA5 LINE L1 -3 6151 5787 200 250 0 0 chr13 47641592 47641632 -54231537 + T-rich Low_complexity Low_complexity 1 40 0 275 355 59 16 chr13 47641728 47641914 -54231255 + MIR SINE MIR 54 247 -15 2348 178 47 27 chr13 47642084 47642368 -54230801 - Tigger3(Golem) DNA MER2_type 0 3029 2752 261 0 0 0 chr13 47642368 47642397 -54230772 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2348 178 47 27 chr13 47642397 47642663 -54230506 - Tigger3(Golem) DNA MER2_type -277 2752 2468 192 179 77 0 chr13 47643427 47643466 -54229703 - L2 LINE L2 -11 3302 3261 198 0 0 0 chr13 47644041 47644063 -54229106 + (TA)n Simple_repeat Simple_repeat 2 23 0 3229 73 4 20 chr13 47644063 47644513 -54228656 - L1PA5 LINE L1 -5 6149 5707 277 241 179 18 chr13 47644745 47644857 -54228312 + SATR1 Satellite Satellite 197 326 -144 701 220 246 51 chr13 47644958 47646133 -54227036 + SATR1 Satellite Satellite 1 1403 -3 854 223 229 45 chr13 47646172 47647061 -54226108 + SATR1 Satellite Satellite 1 1052 -1 298 229 107 69 chr13 47647084 47647215 -54225954 + SATR1 Satellite Satellite 185 320 -150 303 281 79 133 chr13 47647944 47648364 -54224805 + L1M4b LINE L1 209 605 -6254 3670 120 3 8 chr13 47648404 47649002 -54224167 + HERVE LTR ERV1 3249 3843 -3970 3670 119 3 8 chr13 47649395 47649991 -54223178 + HERVE LTR ERV1 3251 3843 -3970 3740 117 3 7 chr13 47650060 47650660 -54222509 + HERVE LTR ERV1 3249 3846 -3967 3646 123 5 7 chr13 47651759 47652358 -54220811 + HERVE LTR ERV1 3249 3846 -3967 3684 114 5 10 chr13 47652821 47653419 -54219750 + HERVE LTR ERV1 3249 3843 -3970 3734 117 5 10 chr13 47653488 47654089 -54219080 + HERVE LTR ERV1 3249 3846 -3967 5210 95 1 0 chr13 47654817 47655533 -54217636 + L1PA8 LINE L1 5455 6171 -1 252 259 80 28 chr13 47655575 47655787 -54217382 - L1M4 LINE L1 -1637 4509 4287 5153 201 46 7 chr13 47655795 47657015 -54216154 - L1PBa LINE L1 -4487 1717 592 1745 141 131 50 chr13 47657015 47657411 -54215758 - MSTA LTR MaLR 0 428 1 5153 201 46 7 chr13 47657411 47658027 -54215142 - L1PBa LINE L1 -5612 592 1 780 209 0 7 chr13 47658021 47658169 -54215000 - L1PBb LINE L1 -5959 245 99 * 2618 292 42 56 chr13 47658163 47659579 -54213590 - L1PBa LINE L1 -5441 1422 27 303 93 0 0 chr13 47659630 47659673 -54213496 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 1625 115 18 65 chr13 47659681 47659959 -54213210 - AluSq SINE Alu 0 313 49 2879 160 38 9 chr13 47659959 47660530 -54212639 - Tigger3b DNA MER2_type -2437 591 1 227 268 41 21 chr13 47662755 47662852 -54210317 - MIR SINE MIR -113 149 51 1115 305 70 3 chr13 47665722 47666109 -54207060 + MER70B LTR ERVL 34 446 -132 278 302 62 16 chr13 47666127 47666256 -54206913 - MLT1H LTR MaLR -312 237 103 1182 170 133 74 chr13 47666861 47667320 -54205849 - L1MA9 LINE L1 -10 6302 5817 494 249 103 30 chr13 47669446 47669611 -54203558 - MER5B DNA MER1_type 0 178 2 10278 196 53 71 chr13 47669893 47671414 -54201755 + L1MA4A LINE L1 1 1547 -5458 1994 196 26 16 chr13 47671414 47671837 -54201332 + MSTB1 LTR MaLR 6 432 0 10278 196 53 71 chr13 47671837 47674496 -54198673 + L1MA4A LINE L1 1547 4251 -2754 189 0 0 0 chr13 47674496 47674517 -54198652 + (CAA)n Simple_repeat Simple_repeat 1 21 0 10278 196 53 71 chr13 47674517 47675123 -54198046 + L1MA4A LINE L1 4251 4866 -2139 1207 34 22 17 chr13 47675123 47675301 -54197868 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1700 186 0 4 chr13 47675301 47675581 -54197588 - AluSx SINE Alu -33 279 1 10278 196 53 71 chr13 47675581 47675734 -54197435 + L1MA4A LINE L1 4865 5019 -1986 216 0 0 0 chr13 47675734 47675758 -54197411 + (CA)n Simple_repeat Simple_repeat 1 24 0 10278 196 53 71 chr13 47675758 47677528 -54195641 + L1MA4A LINE L1 5019 7000 -5 24 53 0 0 chr13 47679229 47679267 -54193902 + AT_rich Low_complexity Low_complexity 1 38 0 740 203 76 0 chr13 47679276 47679434 -54193735 - FRAM SINE Alu -1 175 6 26 0 0 0 chr13 47681495 47681521 -54191648 + AT_rich Low_complexity Low_complexity 1 26 0 932 178 35 6 chr13 47681531 47681700 -54191469 - AluJo SINE Alu -138 174 1 772 237 30 6 chr13 47681888 47682057 -54191112 + MER58B DNA MER1_type 167 339 -2 22 0 0 0 chr13 47682227 47682249 -54190920 + AT_rich Low_complexity Low_complexity 1 22 0 1378 150 184 26 chr13 47682270 47682536 -54190633 + AluSx SINE Alu 1 308 -4 921 202 6 16 chr13 47683138 47683321 -54189848 - MER1B DNA MER1_type -116 181 1 1080 341 114 13 chr13 47683338 47684028 -54189141 + L2 LINE L2 1471 2230 -1084 543 351 9 5 chr13 47684136 47684347 -54188822 + L2 LINE L2 2190 2401 -913 1817 182 67 42 chr13 47684347 47684736 -54188433 + MER65A LTR ERV1 1 404 -41 2808 7 0 0 chr13 47684736 47685046 -54188123 - AluYa5 SINE Alu -1 310 1 1817 182 67 42 chr13 47685046 47685089 -54188080 + MER65A LTR ERV1 404 444 -1 7405 214 63 53 chr13 47685174 47686823 -54186346 + MER65A-int LTR ERV1 83 1714 -3157 2639 137 17 2 chr13 47686823 47687245 -54185924 + MSTA LTR MaLR 1 428 0 7405 214 63 53 chr13 47687245 47687539 -54185630 + MER65A-int LTR ERV1 1714 2004 -2867 695 215 0 0 chr13 47687539 47687669 -54185500 - FLAM_A SINE Alu 0 133 4 7405 214 63 53 chr13 47687669 47688111 -54185058 + MER65A-int LTR ERV1 2004 2493 -2378 626 219 102 16 chr13 47688214 47688401 -54184768 + MER65A-int LTR ERV1 1541 1743 -6377 973 192 25 82 chr13 47688417 47688976 -54184193 + MER65A-int LTR ERV1 1720 2420 -4338 2850 124 41 12 chr13 47689172 47689663 -54183506 + L1PA13 LINE L1 5655 6159 -4 740 206 37 49 chr13 47689706 47689949 -54183220 + MER65A-int LTR ERV1 3493 3732 -2866 1602 227 93 73 chr13 47690034 47691343 -54181826 + MER65A-int LTR ERV1 2469 5583 -1015 302 271 0 35 chr13 47691357 47691442 -54181727 + MER65A-int LTR ERV1 5181 5262 -1069 1422 271 63 17 chr13 47691536 47691949 -54181220 + MER65A-int LTR ERV1 3622 4053 -818 * 1522 268 38 13 chr13 47691933 47692385 -54180784 + MER65A-int LTR ERV1 4409 4871 0 1932 148 131 13 chr13 47692385 47692783 -54180386 + MER65A LTR ERV1 1 445 0 952 357 48 25 chr13 47692796 47693526 -54179643 + L2 LINE L2 2412 3173 -140 963 248 51 68 chr13 47693526 47694039 -54179130 + MLT1D LTR MaLR 1 504 -1 952 357 48 25 chr13 47694039 47694184 -54178985 + L2 LINE L2 3173 3313 0 2260 91 3 0 chr13 47694709 47695016 -54178153 + AluSp SINE Alu 1 308 -5 387 300 0 10 chr13 47695158 47695258 -54177911 + MER81 DNA DNA 14 112 -2 22 56 0 0 chr13 47697346 47697382 -54175787 + AT_rich Low_complexity Low_complexity 1 36 0 276 30 0 0 chr13 47697629 47697662 -54175507 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1485 233 64 3 chr13 47697668 47698012 -54175157 + MLT1A1 LTR MaLR 1 365 0 488 255 26 7 chr13 47698012 47698165 -54175004 + L1ME3A LINE L1 1890 2045 -4351 901 193 28 11 chr13 47698166 47698347 -54174822 + MLT1A1 LTR MaLR 1 184 -181 285 203 17 0 chr13 47698330 47698389 -54174780 + THE1A LTR MaLR 296 355 0 * 310 324 67 11 chr13 47698531 47698892 -54174277 + L1ME3A LINE L1 2219 2599 -3616 23 33 0 0 chr13 47699221 47699251 -54173918 + AT_rich Low_complexity Low_complexity 1 30 0 247 266 95 6 chr13 47699347 47699505 -54173664 + L1ME3A LINE L1 3367 3538 -2677 353 302 86 12 chr13 47699888 47700309 -54172860 + L1ME3A LINE L1 4306 4757 -1458 402 332 141 19 chr13 47700343 47700713 -54172456 + L1ME3A LINE L1 4838 5252 -963 385 198 19 0 chr13 47700816 47700922 -54172247 + (TA)n Simple_repeat Simple_repeat 1 108 0 226 188 125 0 chr13 47700990 47701070 -54172099 - L1MC4 LINE L1 -1339 6703 6614 771 319 62 56 chr13 47701121 47701890 -54171279 + L1ME3A LINE L1 5443 6216 -23 474 18 0 0 chr13 47702211 47702266 -54170903 + (TA)n Simple_repeat Simple_repeat 1 55 0 225 0 0 0 chr13 47702266 47702293 -54170876 - L1PA3 LINE L1 -13 6142 6116 230 259 0 24 chr13 47702389 47702474 -54170695 + L1ME4a LINE L1 6021 6103 -18 23 68 0 0 chr13 47702477 47702521 -54170648 + AT_rich Low_complexity Low_complexity 1 44 0 546 91 11 34 chr13 47702610 47702698 -54170471 + L1MA5 LINE L1 6134 6219 -81 21 36 0 0 chr13 47702746 47702774 -54170395 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 47702954 47702981 -54170188 + AT_rich Low_complexity Low_complexity 1 27 0 993 128 34 0 chr13 47703637 47703786 -54169383 + L1PA15 LINE L1 6004 6157 -8 303 333 67 7 chr13 47703948 47704083 -54169086 + MIR SINE MIR 83 225 -37 1258 144 88 0 chr13 47704191 47704441 -54168728 + L1MA4 LINE L1 6023 6294 -6 30 0 0 0 chr13 47704957 47704987 -54168182 + AT_rich Low_complexity Low_complexity 1 30 0 1833 114 50 7 chr13 47706265 47706545 -54166624 + AluSx SINE Alu 5 296 -16 198 0 0 0 chr13 47706702 47706724 -54166445 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 299 289 104 49 chr13 47707595 47708007 -54165162 - L1ME3A LINE L1 -153 5951 5424 467 271 74 84 chr13 47708156 47708846 -54164323 - L1ME3A LINE L1 -867 5213 4531 2937 213 72 31 chr13 47709077 47709965 -54163204 + L1MB8 LINE L1 5179 6094 -84 234 62 0 0 chr13 47711820 47711852 -54161317 + (CA)n Simple_repeat Simple_repeat 2 33 0 411 38 0 0 chr13 47711877 47711930 -54161239 + (TA)n Simple_repeat Simple_repeat 1 53 0 621 241 0 15 chr13 47712485 47712618 -54160551 + MLT1A1 LTR MaLR 1 131 -297 1011 56 0 0 chr13 47712640 47712765 -54160404 + AluSp SINE Alu 1 125 -188 804 258 17 0 chr13 47712844 47713022 -54160147 + MLT1A1 LTR MaLR 185 365 0 2316 118 88 13 chr13 47713064 47713461 -54159708 - MSTA LTR MaLR -1 427 1 338 260 8 16 chr13 47713867 47714033 -54159136 + (TAGA)n Simple_repeat Simple_repeat 1 164 0 269 227 40 0 chr13 47715776 47715851 -54157318 + MLT1H1 LTR MaLR 464 541 -14 226 377 38 19 chr13 47716013 47716172 -54156997 + L3 LINE CR1 963 1124 -453 213 94 0 0 chr13 47717347 47717379 -54155790 + (TC)n Simple_repeat Simple_repeat 1 32 0 3893 190 24 10 chr13 47717487 47718297 -54154872 + L1PB4 LINE L1 5336 6156 0 253 207 21 117 chr13 47718283 47718428 -54154741 + L1M4 LINE L1 2270 2400 -3746 * 305 222 73 94 chr13 47718518 47718806 -54154363 + L1M4 LINE L1 3053 3334 -2812 613 319 69 0 chr13 47718871 47719231 -54153938 - L1ME3A LINE L1 -2252 3828 3444 238 322 93 0 chr13 47719242 47719360 -54153809 - L1ME3A LINE L1 -2709 3371 3243 1477 297 94 18 chr13 47719945 47720720 -54152449 - L1ME3A LINE L1 -5235 835 2 2568 180 17 10 chr13 47720746 47721229 -54151940 - MER66B LTR ERV1 0 486 1 23 0 0 0 chr13 47722161 47722184 -54150985 + AT_rich Low_complexity Low_complexity 1 23 0 268 221 47 0 chr13 47722790 47722876 -54150293 - L1MC4 LINE L1 -1339 6703 6614 254 244 61 26 chr13 47724132 47724247 -54148922 + L1ME3 LINE L1 6041 6159 -3 265 292 0 0 chr13 47724831 47724896 -54148273 + (TG)n Simple_repeat Simple_repeat 2 66 0 1872 168 61 52 chr13 47724938 47725362 -54147807 - MSTA LTR MaLR 0 428 1 409 208 11 137 chr13 47725575 47725758 -54147411 + MER58C DNA MER1_type 52 211 -4 260 290 0 0 chr13 47726096 47726165 -54147004 - LTR16B LTR ERVL -4 460 392 623 310 69 12 chr13 47726747 47726992 -54146177 - LTR16B LTR ERVL -193 271 13 1880 162 10 0 chr13 47726992 47727282 -54145887 + AluSx SINE Alu 1 293 -19 689 161 17 23 chr13 47728096 47728270 -54144899 + CT-rich Low_complexity Low_complexity 1 173 0 296 143 18 0 chr13 47728263 47728319 -54144850 + C-rich Low_complexity Low_complexity 4 60 0 * 362 115 58 11 chr13 47728316 47728403 -54144766 + CT-rich Low_complexity Low_complexity 1 91 0 1127 276 83 43 chr13 47729679 47730208 -54142961 + MER68 LTR ERV1 9 558 -4 25 65 0 0 chr13 47730546 47730592 -54142577 + AT_rich Low_complexity Low_complexity 1 46 0 1687 141 30 0 chr13 47730933 47731202 -54141967 + AluSq SINE Alu 12 288 -25 2269 165 15 35 chr13 47731431 47731885 -54141284 - MER65A LTR ERV1 0 445 1 3615 263 94 66 chr13 47731891 47734158 -54139011 - MER65A-int LTR ERV1 -6 4865 2534 380 190 33 58 chr13 47734158 47734279 -54138890 - MER65A-int LTR ERV1 -2232 2639 2522 209 146 21 0 chr13 47734501 47734549 -54138620 + (TA)n Simple_repeat Simple_repeat 2 50 0 346 219 81 8 chr13 47734640 47734763 -54138406 - MER4-int LTR ERV1 -2586 4012 3881 203 167 0 0 chr13 47735839 47735875 -54137294 + (TG)n Simple_repeat Simple_repeat 1 36 0 878 73 0 8 chr13 47735889 47736013 -54137156 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 1029 209 100 4 chr13 47736088 47736337 -54136832 - AluSx SINE Alu -37 275 3 580 93 21 10 chr13 47737413 47737510 -54135659 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 1025 209 100 4 chr13 47737580 47737829 -54135340 - AluSx SINE Alu -37 275 3 21 57 0 0 chr13 47738466 47738501 -54134668 + AT_rich Low_complexity Low_complexity 1 35 0 328 304 110 46 chr13 47739024 47739287 -54133882 + L1MC/D LINE L1 5260 5539 -794 306 73 0 0 chr13 47739387 47739428 -54133741 + (CA)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr13 47740386 47740417 -54132752 + AT_rich Low_complexity Low_complexity 1 31 0 1657 189 3 10 chr13 47741302 47741608 -54131561 - AluJb SINE Alu -8 304 1 237 65 0 0 chr13 47741617 47741648 -54131521 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr13 47742092 47742125 -54131044 + AT_rich Low_complexity Low_complexity 1 33 0 418 294 233 0 chr13 47742244 47742390 -54130779 + MER5A DNA MER1_type 10 189 0 941 348 47 19 chr13 47744016 47744444 -54128725 - LTR16B LTR ERVL 0 464 25 255 61 0 0 chr13 47744460 47744493 -54128676 + (CA)n Simple_repeat Simple_repeat 2 34 0 186 0 88 0 chr13 47744771 47744805 -54128364 + T-rich Low_complexity Low_complexity 2 38 0 180 331 110 15 chr13 47744943 47745079 -54128090 + L2 LINE L2 3163 3311 -2 229 286 88 66 chr13 47745723 47746087 -54127082 - L1MEc LINE L1 -4577 1819 1448 276 30 0 0 chr13 47746240 47746273 -54126896 + (CA)n Simple_repeat Simple_repeat 2 34 0 186 0 88 0 chr13 47746551 47746585 -54126584 + T-rich Low_complexity Low_complexity 2 38 0 930 310 93 44 chr13 47747506 47748065 -54125104 - L1MEc LINE L1 -4577 1819 1289 441 0 0 0 chr13 47748065 47748114 -54125055 + (TG)n Simple_repeat Simple_repeat 2 50 0 930 310 93 44 chr13 47748114 47748814 -54124355 - L1MEc LINE L1 -5107 1289 499 2363 127 28 5 chr13 47748855 47749242 -54123927 - L1PA8A LINE L1 -13 6118 5723 423 139 0 0 chr13 47749242 47749321 -54123848 - L1P LINE L1 -2989 3157 3079 * 1234 152 0 0 chr13 47749319 47749510 -54123659 - L1P3 LINE L1 -5095 780 590 * 3967 98 11 2 chr13 47749507 47750438 -54122731 - L1PA8A LINE L1 -343 5788 4848 12279 131 7 9 chr13 47750439 47752449 -54120720 + L1PA8A LINE L1 2858 4861 -1285 38 103 0 0 chr13 47753224 47753360 -54119809 + AT_rich Low_complexity Low_complexity 1 136 0 31 26 0 0 chr13 47753551 47753589 -54119580 + AT_rich Low_complexity Low_complexity 1 38 0 2128 108 7 10 chr13 47755094 47755400 -54117769 - AluSc SINE Alu -3 306 2 317 274 110 27 chr13 47755872 47756018 -54117151 + MIR SINE MIR 74 231 -31 260 370 181 8 chr13 47756098 47756225 -54116944 + MER91A DNA MER1_type 19 167 -29 955 216 94 37 chr13 47756721 47757072 -54116097 + MER39 LTR ERV1 336 706 -1 27 0 0 0 chr13 47757707 47757734 -54115435 + AT_rich Low_complexity Low_complexity 1 27 0 39 50 0 0 chr13 47758392 47758452 -54114717 + AT_rich Low_complexity Low_complexity 1 60 0 302 294 81 44 chr13 47759050 47759186 -54113983 - MIR3 SINE MIR -62 146 6 23 54 0 0 chr13 47759854 47759891 -54113278 + AT_rich Low_complexity Low_complexity 1 37 0 1040 225 47 70 chr13 47759912 47760210 -54112959 + AluJo SINE Alu 7 297 -15 35 54 0 0 chr13 47760297 47760353 -54112816 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr13 47760515 47760537 -54112632 + AT_rich Low_complexity Low_complexity 1 22 0 1693 246 50 27 chr13 47761015 47761531 -54111638 - LTR38 LTR ERV1 -11 545 18 1090 204 0 32 chr13 47761791 47762007 -54111162 - AluJb SINE Alu -20 292 84 25 31 0 0 chr13 47762588 47762620 -54110549 + AT_rich Low_complexity Low_complexity 1 32 0 1352 273 57 40 chr13 47762725 47763326 -54109843 + L1MC4 LINE L1 7101 7711 -331 483 253 31 37 chr13 47763770 47763932 -54109237 - LTR40b LTR ERVL -2 460 300 3365 217 61 12 chr13 47763936 47764792 -54108377 + L1MC3 LINE L1 5971 6868 -917 753 138 0 0 chr13 47764792 47764915 -54108254 - L1P LINE L1 -815 5331 5209 8012 216 49 63 chr13 47764967 47764981 -54108188 - L1 LINE L1 -2695 4870 4857 3659 43 0 13 chr13 47764981 47765441 -54107728 - L1PA4 LINE L1 -3 6152 5699 8012 216 49 63 chr13 47765441 47768967 -54104202 - L1 LINE L1 -2708 4857 700 216 0 0 0 chr13 47768967 47768991 -54104178 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 8012 216 49 63 chr13 47768991 47769671 -54103498 - L1 LINE L1 -6865 700 12 180 172 0 0 chr13 47770289 47770318 -54102851 - L2 LINE L2 -2 3270 3242 634 245 43 27 chr13 47770625 47770813 -54102356 - MER58A DNA MER1_type -1 223 33 260 331 124 31 chr13 47770869 47771126 -54102043 - L3 LINE CR1 -673 904 624 25 31 0 0 chr13 47772911 47772943 -54100226 + AT_rich Low_complexity Low_complexity 1 32 0 2816 218 40 65 chr13 47772943 47773895 -54099274 + MER21A LTR ERV1 49 913 -18 219 364 32 88 chr13 47774803 47775086 -54098083 - L3 LINE CR1 -392 1185 919 2751 192 70 40 chr13 47775609 47776280 -54096889 - MER67C LTR ERV1 -17 693 3 21 57 0 0 chr13 47777123 47777158 -54096011 + AT_rich Low_complexity Low_complexity 1 35 0 350 221 61 61 chr13 47778428 47778655 -54094514 - MLT1D LTR MaLR -227 240 12 21 0 0 0 chr13 47779552 47779573 -54093596 + AT_rich Low_complexity Low_complexity 1 21 0 192 297 187 26 chr13 47780351 47780506 -54092663 - MIR SINE MIR -4 258 79 216 0 0 0 chr13 47780920 47780944 -54092225 + (TA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr13 47781296 47781324 -54091845 + AT_rich Low_complexity Low_complexity 1 28 0 180 234 0 0 chr13 47781796 47781843 -54091326 + (TG)n Simple_repeat Simple_repeat 1 47 0 1774 135 0 0 chr13 47782086 47782346 -54090823 + AluSq SINE Alu 49 308 -5 189 316 35 128 chr13 47782349 47782637 -54090532 - L2 LINE L2 -78 3194 2934 483 245 17 56 chr13 47783162 47783337 -54089832 + MER5A DNA MER1_type 8 166 -12 1919 135 35 0 chr13 47783722 47784010 -54089159 + AluSg SINE Alu 1 298 -12 399 145 0 53 chr13 47784030 47784106 -54089063 + FLAM_A SINE Alu 56 127 -6 483 256 94 34 chr13 47784812 47785046 -54088123 + L1M4 LINE L1 3952 4199 -1947 312 299 8 39 chr13 47785047 47785174 -54087995 + L1MEc LINE L1 2134 2256 -4140 1725 179 112 32 chr13 47785282 47785684 -54087485 - Tigger2a DNA MER2_type 0 434 1 1340 230 58 27 chr13 47786087 47786198 -54086971 - L1MA9 LINE L1 -33 6156 6050 291 28 0 0 chr13 47786198 47786234 -54086935 + (TG)n Simple_repeat Simple_repeat 2 37 0 1340 230 58 27 chr13 47786234 47786565 -54086604 - L1MA9 LINE L1 -139 6050 5823 2475 162 70 34 chr13 47786702 47787177 -54085992 - MER21A LTR ERV1 -6 925 434 1112 159 10 20 chr13 47787180 47787381 -54085788 - MER21A LTR ERV1 -719 212 14 1079 245 34 63 chr13 47788321 47788700 -54084469 - MLT1A2 LTR MaLR -4 370 3 234 91 0 0 chr13 47788787 47788820 -54084349 + (A)n Simple_repeat Simple_repeat 1 33 0 2836 166 87 4 chr13 47788822 47789365 -54083804 - LTR49 LTR ERV1 -2 593 6 23 33 0 0 chr13 47789484 47789514 -54083655 + AT_rich Low_complexity Low_complexity 1 30 0 4483 192 40 10 chr13 47790132 47791045 -54082124 - L1MC2 LINE L1 -32 6312 5372 29 0 0 0 chr13 47791237 47791266 -54081903 + AT_rich Low_complexity Low_complexity 1 29 0 1728 158 61 21 chr13 47791433 47791762 -54081407 - MER61A LTR ERV1 0 343 2 16348 106 27 11 chr13 47791763 47794189 -54078980 - MER61A-int LTR ERV1 0 5217 2753 210 200 0 20 chr13 47794421 47794471 -54078698 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 291 54 0 0 chr13 47795853 47795890 -54077279 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1204 169 103 149 chr13 47795960 47796415 -54076754 - LTR23 LTR ERV1 0 437 4 399 399 20 10 chr13 47796484 47796687 -54076482 + L1MEc LINE L1 382 586 -6021 3676 145 100 15 chr13 47797242 47797904 -54075265 - LTR62 LTR ERVK -1 718 1 454 294 86 50 chr13 47798068 47798596 -54074573 + L1MEc LINE L1 1117 1654 -4772 1812 122 32 25 chr13 47798608 47798887 -54074282 + AluSx SINE Alu 1 281 -31 233 241 127 0 chr13 47798891 47798970 -54074199 + L1MC4 LINE L1 6614 6702 -1340 305 325 71 19 chr13 47798978 47799132 -54074037 + L1MEc LINE L1 1870 2031 -4576 858 328 169 26 chr13 47799168 47799799 -54073370 - L2 LINE L2 -206 3107 2369 1141 292 62 46 chr13 47799814 47800310 -54072859 - LTR33 LTR ERVL -17 504 1 1344 260 47 64 chr13 47800327 47800363 -54072806 - MLT2B1 LTR ERVL -7 513 478 432 0 0 0 chr13 47800363 47800411 -54072758 + (CA)n Simple_repeat Simple_repeat 2 49 0 1344 260 47 64 chr13 47800411 47800889 -54072280 - MLT2B1 LTR ERVL -42 478 8 602 354 120 6 chr13 47800931 47801273 -54071896 - L2 LINE L2 -1035 2279 1899 961 139 0 0 chr13 47801378 47801522 -54071647 - AluJb SINE Alu -1 311 168 2258 143 37 3 chr13 47801541 47801892 -54071277 - THE1B LTR MaLR 0 364 2 21 36 0 0 chr13 47802296 47802324 -54070845 + AT_rich Low_complexity Low_complexity 1 28 0 241 217 36 24 chr13 47803227 47803310 -54069859 + GA-rich Low_complexity Low_complexity 1 84 0 231 264 28 14 chr13 47803765 47803837 -54069332 + L2 LINE L2 3163 3235 -78 26 0 0 0 chr13 47803970 47803996 -54069173 + AT_rich Low_complexity Low_complexity 1 26 0 521 323 37 71 chr13 47804251 47804328 -54068841 + MLT1K LTR MaLR 95 173 -415 489 16 0 0 chr13 47804328 47804389 -54068780 + L1PA3 LINE L1 6092 6152 -3 521 323 37 71 chr13 47804389 47804745 -54068424 + MLT1K LTR MaLR 173 513 -75 23 33 0 0 chr13 47805074 47805104 -54068065 + AT_rich Low_complexity Low_complexity 1 30 0 1304 265 54 68 chr13 47805348 47805865 -54067304 - MER67D LTR ERV1 -3 511 2 333 47 0 0 chr13 47806454 47806497 -54066672 + (CA)n Simple_repeat Simple_repeat 2 44 0 2238 179 9 42 chr13 47806498 47806946 -54066223 + Tigger2a DNA MER2_type 2 434 0 5615 163 16 2 chr13 47807076 47808681 -54064488 + L1PB2 LINE L1 4518 6149 -2 25 75 0 0 chr13 47808762 47808815 -54064354 + AT_rich Low_complexity Low_complexity 1 53 0 2738 102 0 0 chr13 47808956 47809348 -54063821 + L1PA13 LINE L1 5772 6163 0 405 326 7 0 chr13 47810204 47810345 -54062824 - MER69A DNA AcHobo -35 142 1 1761 133 4 0 chr13 47811367 47811630 -54061539 - AluSg SINE Alu 0 310 47 22 0 0 0 chr13 47812268 47812290 -54060879 + AT_rich Low_complexity Low_complexity 1 22 0 204 125 0 0 chr13 47812975 47813007 -54060162 + (CA)n Simple_repeat Simple_repeat 2 33 0 331 273 71 7 chr13 47813237 47813391 -54059778 - MER103 DNA DNA -2 164 1 306 0 0 0 chr13 47814178 47814212 -54058957 + (TA)n Simple_repeat Simple_repeat 2 35 0 358 309 155 18 chr13 47815785 47816121 -54057048 + L2 LINE L2 2038 2419 -895 592 158 30 0 chr13 47816365 47816466 -54056703 - MER45A DNA AcHobo 0 178 75 661 267 24 0 chr13 47817179 47817344 -54055825 - MER45A DNA AcHobo 0 178 10 264 277 170 19 chr13 47820115 47820274 -54052895 + L1ME3A LINE L1 5986 6168 -2 351 130 0 7 chr13 47820284 47820353 -54052816 + Alu SINE Alu 1 52 -251 1426 88 0 5 chr13 47820353 47820545 -54052624 + AluSg/x SINE Alu 116 306 -6 229 147 0 0 chr13 47822202 47822236 -54050933 - Alu SINE Alu -99 34 1 13033 162 27 21 chr13 47822236 47824594 -54048575 - Tigger1 DNA MER2_type -47 2371 1 183 156 0 0 chr13 47824594 47824626 -54048543 + (TA)n Simple_repeat Simple_repeat 1 32 0 1569 220 33 0 chr13 47824628 47824964 -54048205 - MER7A DNA MER2_type 0 346 2 297 0 0 0 chr13 47824965 47824998 -54048171 + (TG)n Simple_repeat Simple_repeat 2 34 0 3224 27 0 0 chr13 47826080 47826453 -54046716 - L1PA4 LINE L1 -295 5860 5488 2034 39 15 4 chr13 47826453 47826713 -54046456 + L1PA4 LINE L1 5890 6152 -3 1095 159 42 17 chr13 47826996 47827235 -54045934 - L1MA8 LINE L1 0 6291 6047 2503 62 0 0 chr13 47829139 47829448 -54043721 - AluY SINE Alu 0 311 3 623 319 21 25 chr13 47829475 47829710 -54043459 + MIR SINE MIR 3 236 -26 21 0 0 0 chr13 47832789 47832810 -54040359 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr13 47832845 47832880 -54040289 + AT_rich Low_complexity Low_complexity 1 35 0 220 184 0 0 chr13 47833029 47833067 -54040102 + (CA)n Simple_repeat Simple_repeat 1 38 0 2056 234 80 37 chr13 47833300 47834049 -54039120 - L1ME1 LINE L1 -3 6163 5383 280 178 6 0 chr13 47834124 47834194 -54038975 + L1MA7 LINE L1 6229 6291 0 294 29 0 0 chr13 47836362 47836397 -54036772 + (TG)n Simple_repeat Simple_repeat 2 36 0 1811 237 44 31 chr13 47836399 47836851 -54036318 - MLT2B1 LTR ERVL -62 458 1 337 246 82 33 chr13 47836923 47837045 -54036124 + MIR SINE MIR 97 224 -38 840 254 90 20 chr13 47837065 47837309 -54035860 + L1MB8 LINE L1 20 280 -6579 1537 162 36 43 chr13 47837447 47837749 -54035420 - AluJo SINE Alu -10 302 3 23 0 0 0 chr13 47837752 47837775 -54035394 + AT_rich Low_complexity Low_complexity 1 23 0 759 263 136 22 chr13 47837808 47838460 -54034709 + L1MB8 LINE L1 4006 5213 -1744 * 3324 223 43 19 chr13 47838457 47839319 -54033850 + L1MB8 LINE L1 6107 6989 0 625 241 92 100 chr13 47841434 47841982 -54031187 + L1MC5 LINE L1 6846 7390 -571 1428 149 164 8 chr13 47841982 47842250 -54030919 + AluSx SINE Alu 1 310 -2 625 241 92 100 chr13 47842250 47842333 -54030836 + L1MC5 LINE L1 7390 7472 -489 972 160 18 102 chr13 47842423 47842602 -54030567 - Tigger7 DNA MER2_type -1 2490 2340 1762 168 3 3 chr13 47842602 47842900 -54030269 + AluSx SINE Alu 7 304 -8 972 160 18 102 chr13 47842900 47842995 -54030174 - Tigger7 DNA MER2_type -151 2340 2239 * 3369 172 25 13 chr13 47842994 47843598 -54029571 - Tigger7 DNA MER2_type -115 618 8 373 162 88 15 chr13 47843813 47843881 -54029288 + Tigger2a DNA MER2_type 1 73 -361 557 265 22 7 chr13 47843912 47844048 -54029121 - MER8 DNA MER2_type -62 177 40 517 306 102 17 chr13 47846439 47846860 -54026309 + L1MEc LINE L1 1770 2226 -4170 882 213 0 18 chr13 47847133 47847297 -54025872 + FRAM SINE Alu 1 161 -5 370 365 67 35 chr13 47847618 47848098 -54025071 + ERVL LTR ERVL 2232 2726 -3038 396 372 56 4 chr13 47848284 47848553 -54024616 + ERVL LTR ERVL 3016 3298 -2466 22 35 0 0 chr13 47849953 47849982 -54023187 + AT_rich Low_complexity Low_complexity 1 29 0 393 261 54 60 chr13 47850985 47851169 -54022000 + L2 LINE L2 3131 3313 0 5694 221 30 35 chr13 47851601 47853092 -54020077 - L1MC3 LINE L1 -356 7429 5947 23 0 0 0 chr13 47853101 47853124 -54020045 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 49 chr13 47853413 47853429 -54019740 + AT_rich Low_complexity Low_complexity 1 16 -23 1443 211 7 14 chr13 47853429 47853718 -54019451 + AluJo SINE Alu 1 287 -25 26 0 0 49 chr13 47853718 47853742 -54019427 + AT_rich Low_complexity Low_complexity 16 39 0 450 0 0 0 chr13 47855256 47855306 -54017863 + (TA)n Simple_repeat Simple_repeat 1 50 0 24 0 0 0 chr13 47855342 47855366 -54017803 + AT_rich Low_complexity Low_complexity 1 24 0 634 239 65 0 chr13 47855479 47855634 -54017535 + L1PB4 LINE L1 5992 6156 0 760 272 12 41 chr13 47857329 47857575 -54015594 + L2 LINE L2 2304 2542 -772 602 193 22 176 chr13 47857575 47857932 -54015237 + L1MC4 LINE L1 7739 8040 -2 840 287 34 47 chr13 47857986 47858307 -54014862 + L2 LINE L2 2531 2847 -467 22 35 0 0 chr13 47859055 47859084 -54014085 + AT_rich Low_complexity Low_complexity 1 29 0 342 147 0 0 chr13 47860393 47860461 -54012708 + (GA)n Simple_repeat Simple_repeat 2 69 0 2185 117 0 0 chr13 47862102 47862393 -54010776 - AluSg SINE Alu -19 291 1 681 126 31 47 chr13 47862397 47862524 -54010645 - AluSg SINE Alu -185 125 1 1712 116 0 0 chr13 47862526 47862758 -54010411 - AluSc SINE Alu -17 292 61 41 36 0 0 chr13 47863322 47863377 -54009792 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr13 47863456 47863480 -54009689 + AT_rich Low_complexity Low_complexity 1 24 0 811 322 66 50 chr13 47864476 47865355 -54007814 - MER45C DNA AcHobo -27 926 1 281 227 13 0 chr13 47865365 47865440 -54007729 + CT-rich Low_complexity Low_complexity 1 76 0 903 161 0 0 chr13 47866296 47866433 -54006736 - FRAM SINE Alu -19 157 21 203 193 35 0 chr13 47866915 47866972 -54006197 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 217 286 0 0 chr13 47867693 47867742 -54005427 + L2 LINE L2 3265 3313 0 3587 124 50 98 chr13 47868648 47869472 -54003697 + LTR1 LTR ERV1 2 785 0 239 326 72 33 chr13 47869478 47869659 -54003510 - LTR33 LTR ERVL -8 513 326 381 341 47 28 chr13 47869787 47869998 -54003171 - LTR33 LTR ERVL -297 224 10 238 283 25 50 chr13 47870252 47870372 -54002797 - LTR16A1 LTR ERVL -8 449 333 280 253 140 77 chr13 47871385 47871440 -54001729 - L1ME LINE L1 -451 5670 5620 2196 104 0 3 chr13 47871440 47871737 -54001432 - AluSx SINE Alu -16 296 1 280 253 140 77 chr13 47871737 47871981 -54001188 - L1ME LINE L1 -501 5620 5352 1890 185 27 0 chr13 47872935 47873265 -53999904 + MER2 DNA MER2_type 7 345 0 589 223 25 13 chr13 47873431 47873588 -53999581 - LTR67 LTR ERVL -1 556 398 277 333 67 17 chr13 47874010 47874130 -53999039 - MIR SINE MIR -89 173 48 21 0 0 0 chr13 47874479 47874500 -53998669 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 47875181 47875202 -53997967 + AT_rich Low_complexity Low_complexity 1 21 0 277 314 0 0 chr13 47875444 47875530 -53997639 + L2 LINE L2 3222 3307 -6 2123 119 0 3 chr13 47875584 47875879 -53997290 + AluSg SINE Alu 1 294 -16 350 221 61 61 chr13 47878656 47878883 -53994286 - MLT1D LTR MaLR -227 240 12 21 0 0 0 chr13 47879780 47879801 -53993368 + AT_rich Low_complexity Low_complexity 1 21 0 192 297 187 26 chr13 47880577 47880732 -53992437 - MIR SINE MIR -4 258 79 324 0 0 0 chr13 47881144 47881180 -53991989 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr13 47881532 47881560 -53991609 + AT_rich Low_complexity Low_complexity 1 28 0 180 234 0 0 chr13 47882032 47882079 -53991090 + (TG)n Simple_repeat Simple_repeat 1 47 0 1736 137 0 0 chr13 47882322 47882577 -53990592 + AluSq SINE Alu 49 303 -10 483 245 17 56 chr13 47883393 47883568 -53989601 + MER5A DNA MER1_type 8 166 -12 1901 136 35 0 chr13 47883952 47884238 -53988931 + AluSg SINE Alu 1 296 -14 399 145 0 53 chr13 47884258 47884334 -53988835 + FLAM_A SINE Alu 56 127 -6 483 256 94 34 chr13 47885040 47885274 -53987895 + L1M4 LINE L1 3952 4199 -1947 312 299 8 39 chr13 47885275 47885402 -53987767 + L1MEc LINE L1 2134 2256 -4140 1725 179 112 32 chr13 47885510 47885912 -53987257 - Tigger2a DNA MER2_type 0 434 1 1340 230 58 27 chr13 47886315 47886426 -53986743 - L1MA9 LINE L1 -33 6156 6050 432 0 0 0 chr13 47886426 47886474 -53986695 + (TG)n Simple_repeat Simple_repeat 2 49 0 1340 230 58 27 chr13 47886474 47886805 -53986364 - L1MA9 LINE L1 -139 6050 5823 2473 159 70 34 chr13 47886942 47887413 -53985756 - MER21A LTR ERV1 -6 925 438 1112 159 10 20 chr13 47887420 47887621 -53985548 - MER21A LTR ERV1 -719 212 14 1076 249 29 65 chr13 47888561 47888943 -53984226 - MLT1A2 LTR MaLR -4 370 3 234 91 0 0 chr13 47889030 47889063 -53984106 + (A)n Simple_repeat Simple_repeat 1 33 0 2801 169 87 4 chr13 47889065 47889608 -53983561 - LTR49 LTR ERV1 -2 593 6 23 33 0 0 chr13 47889727 47889757 -53983412 + AT_rich Low_complexity Low_complexity 1 30 0 231 213 21 0 chr13 47889760 47889807 -53983362 - LTR67 LTR ERVL -14 543 496 4501 191 40 10 chr13 47890375 47891288 -53981881 - L1MC2 LINE L1 -32 6312 5372 29 0 0 0 chr13 47891480 47891509 -53981660 + AT_rich Low_complexity Low_complexity 1 29 0 1728 158 61 21 chr13 47891676 47892005 -53981164 - MER61A LTR ERV1 0 343 2 16348 106 27 11 chr13 47892006 47894432 -53978737 - MER61A-int LTR ERV1 0 5217 2753 210 200 0 20 chr13 47894664 47894714 -53978455 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 399 41 0 0 chr13 47896096 47896145 -53977024 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1215 163 103 149 chr13 47896215 47896670 -53976499 - LTR23 LTR ERV1 0 437 4 399 399 20 10 chr13 47896739 47896942 -53976227 + L1MEc LINE L1 382 586 -6021 3662 147 100 15 chr13 47897497 47898159 -53975010 - LTR62 LTR ERVK -1 718 1 444 297 86 50 chr13 47898323 47898851 -53974318 + L1MEc LINE L1 1117 1654 -4772 1812 122 32 25 chr13 47898863 47899142 -53974027 + AluSx SINE Alu 1 281 -31 233 241 127 0 chr13 47899146 47899225 -53973944 + L1MC4 LINE L1 6614 6702 -1340 305 325 71 19 chr13 47899235 47899389 -53973780 + L1MEc LINE L1 1870 2031 -4576 858 328 169 26 chr13 47899425 47900056 -53973113 - L2 LINE L2 -206 3107 2369 1141 292 62 46 chr13 47900071 47900567 -53972602 - LTR33 LTR ERVL -17 504 1 1344 260 47 64 chr13 47900584 47900620 -53972549 - MLT2B1 LTR ERVL -7 513 478 306 0 0 0 chr13 47900620 47900654 -53972515 + (CA)n Simple_repeat Simple_repeat 2 35 0 1344 260 47 64 chr13 47900654 47901132 -53972037 - MLT2B1 LTR ERVL -42 478 8 587 357 120 6 chr13 47901174 47901516 -53971653 - L2 LINE L2 -1035 2279 1899 946 145 0 0 chr13 47901625 47901770 -53971399 - AluJb SINE Alu 0 312 168 2272 140 37 3 chr13 47901789 47902140 -53971029 - THE1B LTR MaLR 0 364 2 21 36 0 0 chr13 47902544 47902572 -53970597 + AT_rich Low_complexity Low_complexity 1 28 0 961 43 0 0 chr13 47903897 47904014 -53969155 + L1PA3 LINE L1 6036 6152 -3 33 0 0 0 chr13 47904014 47904047 -53969122 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 47904285 47904314 -53968855 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr13 47904480 47904517 -53968652 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 47904543 47904588 -53968581 + AT_rich Low_complexity Low_complexity 1 45 0 50 42 0 0 chr13 47905581 47905652 -53967517 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr13 47905775 47905796 -53967373 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 47906113 47906135 -53967034 + AT_rich Low_complexity Low_complexity 1 22 0 332 261 59 17 chr13 47906852 47906971 -53966198 + MIR SINE MIR 118 241 -21 26 0 0 0 chr13 47907458 47907484 -53965685 + AT_rich Low_complexity Low_complexity 1 26 0 209 302 30 112 chr13 47908083 47908153 -53965016 + L2 LINE L2 7 81 -3233 258 81 0 0 chr13 47908153 47908190 -53964979 + (CA)n Simple_repeat Simple_repeat 1 37 0 209 302 30 112 chr13 47908190 47908288 -53964881 + L2 LINE L2 81 161 -3153 21 0 0 0 chr13 47908827 47908848 -53964321 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr13 47909773 47909807 -53963362 + AT_rich Low_complexity Low_complexity 1 34 0 311 275 12 39 chr13 47909862 47909983 -53963186 + MIR SINE MIR 34 153 -70 36 0 0 0 chr13 47909983 47910019 -53963150 + AT_rich Low_complexity Low_complexity 1 36 0 236 277 113 51 chr13 47910325 47910520 -53962649 + LTR67 LTR ERVL 351 557 0 1586 249 35 45 chr13 47910685 47911195 -53961974 - MLT1D LTR MaLR 0 505 1 186 43 0 0 chr13 47911220 47911243 -53961926 + (TATG)n Simple_repeat Simple_repeat 4 26 0 24 91 0 0 chr13 47912237 47912303 -53960866 + AT_rich Low_complexity Low_complexity 1 66 0 584 99 6 56 chr13 47913458 47913619 -53959550 + (TA)n Simple_repeat Simple_repeat 1 153 0 232 239 0 0 chr13 47913880 47913926 -53959243 + L2 LINE L2 3264 3309 -4 195 129 0 0 chr13 47914155 47914186 -53958983 + (TA)n Simple_repeat Simple_repeat 2 32 0 4285 199 7 22 chr13 47914327 47915158 -53958011 - MER52A LTR ERV1 0 1755 937 1093 228 24 63 chr13 47915165 47915498 -53957671 - MER52A LTR ERV1 -1435 320 1 578 147 42 0 chr13 47915522 47915617 -53957552 - MER52A-int LTR ERV1 -58 7033 6935 2229 82 10 0 chr13 47915696 47915987 -53957182 - AluSx SINE Alu -18 294 1 423 173 0 0 chr13 47916002 47916077 -53957092 - MER50-int LTR ERV1 -5454 1751 1677 433 227 17 25 chr13 47916078 47916200 -53956969 - MER52A LTR ERV1 -647 1108 918 2142 95 9 1 chr13 47916200 47916613 -53956556 - pTR5 LTR ERV1 -2062 376 66 288 237 31 10 chr13 47916613 47916710 -53956459 - LTR30 LTR ERV1 -80 642 544 2888 130 104 39 chr13 47916710 47917465 -53955704 - pTR5 LTR ERV1 -413 2025 743 2584 207 64 65 chr13 47917467 47918431 -53954738 - MER52A LTR ERV1 -681 1074 1 1780 124 67 0 chr13 47919267 47919549 -53953620 - AluSx SINE Alu -11 301 1 265 302 12 0 chr13 47919763 47919849 -53953320 + L1ME3A LINE L1 6035 6121 -49 23 33 0 0 chr13 47919854 47919884 -53953285 + AT_rich Low_complexity Low_complexity 1 30 0 1170 157 5 10 chr13 47919953 47920150 -53953019 - L1MC1 LINE L1 0 6333 6138 3837 169 24 11 chr13 47920152 47920867 -53952302 - L1MC1 LINE L1 -236 6097 5374 4748 183 28 23 chr13 47920878 47922625 -53950544 - L1PA16 LINE L1 -10 6156 4397 3879 225 19 28 chr13 47922639 47923660 -53949509 + L1 LINE L1 3316 4326 -1820 4091 256 37 33 chr13 47923688 47925186 -53947983 - L1MC1 LINE L1 -760 5386 3883 230 324 88 24 chr13 47925382 47925632 -53947537 + HAL1 LINE L1 104 369 -2138 2259 81 0 0 chr13 47925808 47926091 -53947078 + AluSg SINE Alu 1 283 -27 297 0 0 0 chr13 47926105 47926138 -53947031 + (CAT)n Simple_repeat Simple_repeat 2 34 0 723 119 0 0 chr13 47927108 47927234 -53945935 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 202 164 73 0 chr13 47928220 47928275 -53944894 + (TA)n Simple_repeat Simple_repeat 2 60 0 654 312 60 45 chr13 47929742 47930123 -53943046 + MLT1J2 LTR MaLR 21 407 -43 437 352 44 0 chr13 47930401 47930560 -53942609 + MIR3 SINE MIR 40 205 -3 2175 148 8 13 chr13 47930677 47931054 -53942115 - THE1C LTR MaLR 0 375 1 347 321 80 61 chr13 47931127 47931339 -53941830 + MIR SINE MIR 4 219 -43 25 31 0 0 chr13 47931372 47931404 -53941765 + AT_rich Low_complexity Low_complexity 1 32 0 284 312 67 7 chr13 47931435 47931573 -53941596 + MIR3 SINE MIR 44 191 -17 38 51 0 0 chr13 47931725 47931784 -53941385 + AT_rich Low_complexity Low_complexity 1 59 0 27 0 0 0 chr13 47932489 47932516 -53940653 + AT_rich Low_complexity Low_complexity 1 27 0 614 330 191 7 chr13 47934362 47934887 -53938282 - L2 LINE L2 -65 3248 2606 1985 139 0 0 chr13 47934960 47935261 -53937908 + AluSx SINE Alu 5 305 -7 571 272 36 92 chr13 47935318 47935623 -53937546 - L2 LINE L2 -680 2634 2347 2171 114 3 0 chr13 47935759 47936065 -53937104 + AluSq SINE Alu 1 307 -6 372 22 0 0 chr13 47936078 47936123 -53937046 + (TG)n Simple_repeat Simple_repeat 2 46 0 246 62 0 0 chr13 47936122 47936154 -53937015 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 2222 123 0 0 chr13 47936966 47937274 -53935895 - AluSx SINE Alu -4 308 1 26 50 0 0 chr13 47937362 47937402 -53935767 + AT_rich Low_complexity Low_complexity 1 40 0 317 258 59 81 chr13 47938079 47938300 -53934869 + L2 LINE L2 1632 1847 -1467 347 252 180 24 chr13 47938440 47938646 -53934523 - L1ME LINE L1 -322 5799 5562 1067 169 22 0 chr13 47939421 47939604 -53933565 + MER76 LTR ERV 1 187 -501 1832 144 0 11 chr13 47940534 47940847 -53932322 - AluSx SINE Alu 0 312 3 1901 190 40 31 chr13 47942024 47942568 -53930601 + MLT2A1 LTR ERVL 1 554 0 25 20 0 59 chr13 47944072 47944123 -53929046 + AT_rich Low_complexity Low_complexity 1 48 0 249 286 48 0 chr13 47944983 47945067 -53928102 + MLT1L LTR MaLR 111 198 -417 30 27 0 0 chr13 47946053 47946090 -53927079 + AT_rich Low_complexity Low_complexity 1 37 0 376 350 145 14 chr13 47946338 47946627 -53926542 - L2 LINE L2 -5 3267 2941 362 78 0 0 chr13 47946715 47946766 -53926403 + MADE1 DNA Mariner 1 51 -29 5565 35 3 0 chr13 47947072 47947739 -53925430 + L1PA4 LINE L1 5484 6152 -3 26 30 0 0 chr13 47947741 47947774 -53925395 + AT_rich Low_complexity Low_complexity 1 33 0 349 23 0 0 chr13 47947774 47947818 -53925351 - MADE1 DNA Mariner -36 44 1 22 56 0 0 chr13 47948491 47948527 -53924642 + AT_rich Low_complexity Low_complexity 1 36 0 329 186 57 0 chr13 47948528 47948598 -53924571 + L1MA9 LINE L1 6237 6310 -2 456 19 0 0 chr13 47950645 47950698 -53922471 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 411 38 0 0 chr13 47951129 47951182 -53921987 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 47952937 47952959 -53920210 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 47953891 47953912 -53919257 + AT_rich Low_complexity Low_complexity 1 21 0 708 94 9 0 chr13 47954182 47954288 -53918881 - AluSg/x SINE Alu -7 303 197 38773 77 8 10 chr13 47954301 47958639 -53914530 - L1PA5 LINE L1 -3 6151 1832 4376 62 0 12 chr13 47958639 47959203 -53913966 + L1PA5 LINE L1 5587 6143 -11 38773 77 8 10 chr13 47959203 47961029 -53912140 - L1PA5 LINE L1 -4322 1832 3 23 0 0 0 chr13 47961262 47961285 -53911884 + AT_rich Low_complexity Low_complexity 1 23 0 1807 260 47 25 chr13 47961670 47962416 -53910753 - L1M4 LINE L1 -2834 3312 2551 267 81 103 11 chr13 47962424 47962511 -53910658 + A-rich Low_complexity Low_complexity 1 95 0 903 273 55 66 chr13 47963422 47963965 -53909204 - L1ME2 LINE L1 -1 6163 5627 935 279 50 30 chr13 47963973 47964471 -53908698 - L1ME2 LINE L1 -784 5362 4855 27 73 0 0 chr13 47965300 47965355 -53907814 + AT_rich Low_complexity Low_complexity 1 55 0 1202 290 104 25 chr13 47965705 47966270 -53906899 + HsTC2c DNA Tc2 120 729 0 265 361 65 0 chr13 47966648 47966756 -53906413 + L2 LINE L2 3169 3283 -30 189 339 144 0 chr13 47967368 47967486 -53905683 + MIR SINE MIR 72 206 -56 41 21 0 0 chr13 47967794 47967842 -53905327 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr13 47968027 47968056 -53905113 + AT_rich Low_complexity Low_complexity 1 29 0 15000 194 45 20 chr13 47969567 47972710 -53900459 + L1MA2 LINE L1 16 2869 -4696 1868 179 0 0 chr13 47972710 47973011 -53900158 + AluSx SINE Alu 1 301 -11 15000 194 45 20 chr13 47973011 47973198 -53899971 + L1MA2 LINE L1 2869 3050 -4515 4662 212 11 51 chr13 47973210 47974481 -53898688 - L1PB1 LINE L1 -2787 3359 2140 * 7917 196 17 18 chr13 47974478 47976868 -53896301 + L1PB1 LINE L1 3386 5771 -380 237 167 45 0 chr13 47976935 47977001 -53896168 - L1MC4 LINE L1 -1350 6692 6624 2210 137 8 6 chr13 47977002 47977368 -53895801 + L1PB1 LINE L1 5782 6148 -3 2947 189 63 25 chr13 47977380 47978598 -53894571 + L1MA2 LINE L1 3032 4279 -3286 * 9209 209 32 19 chr13 47978591 47979134 -53894035 + L1PB1 LINE L1 2384 2919 -3232 1908 132 3 17 chr13 47979134 47979430 -53893739 + AluSq SINE Alu 1 292 -21 9209 209 32 19 chr13 47979430 47980889 -53892280 + L1PB1 LINE L1 2919 4358 -1793 486 0 0 0 chr13 47980889 47980943 -53892226 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 9209 209 32 19 chr13 47980943 47982586 -53890583 + L1PB1 LINE L1 4358 6092 -59 1039 149 16 5 chr13 47982592 47982780 -53890389 + L1MA2 LINE L1 5984 6173 -1392 3078 123 10 12 chr13 47982780 47983291 -53889878 + L1MA2 LINE L1 7214 7723 0 192 269 0 60 chr13 47983660 47983727 -53889442 + L2 LINE L2 3251 3313 0 236 284 62 12 chr13 47983957 47984038 -53889131 - L2 LINE L2 0 3313 3229 39 50 0 0 chr13 47985117 47985177 -53887992 + AT_rich Low_complexity Low_complexity 1 60 0 300 328 11 11 chr13 47986149 47986326 -53886843 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 336 268 19 32 chr13 47986196 47986353 -53886816 + (TATATG)n Simple_repeat Simple_repeat 2 156 0 460 291 59 54 chr13 47986442 47986645 -53886524 + MIR SINE MIR 50 253 -9 21 36 0 0 chr13 47987408 47987436 -53885733 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr13 47987777 47987806 -53885363 + AT_rich Low_complexity Low_complexity 1 29 0 1659 190 24 6 chr13 47988350 47988682 -53884487 - L1MC1 LINE L1 -2 6331 5994 1936 137 13 3 chr13 47988754 47989053 -53884116 + AluSg SINE Alu 1 302 -8 317 207 37 37 chr13 47989124 47989206 -53883963 - MIR SINE MIR -110 152 71 6727 185 41 26 chr13 47989461 47991666 -53881503 - L1MA7 LINE L1 -8 6283 4040 4506 94 2 0 chr13 47991666 47992269 -53880900 - L1PA8A LINE L1 -2 6129 5526 6727 185 41 26 chr13 47992269 47992635 -53880534 - L1MA7 LINE L1 -2251 4040 3681 34 0 0 0 chr13 47993275 47993309 -53879860 + AT_rich Low_complexity Low_complexity 1 34 0 34 42 0 0 chr13 47993486 47993534 -53879635 + AT_rich Low_complexity Low_complexity 1 48 0 504 254 14 0 chr13 47996741 47996879 -53876290 - L1PA15-16 LINE L1 -4429 2420 2281 1142 249 22 88 chr13 47997475 47997887 -53875282 - MLT1C LTR MaLR -4 463 87 318 26 0 0 chr13 47997887 47997926 -53875243 + (TG)n Simple_repeat Simple_repeat 2 40 0 1142 249 22 88 chr13 47997926 47998004 -53875165 - MLT1C LTR MaLR -380 87 5 213 291 13 25 chr13 47998037 47998116 -53875053 - MIR SINE MIR -21 241 164 287 305 298 0 chr13 47998126 47998257 -53874912 + MIR SINE MIR 31 200 -62 229 357 63 37 chr13 47998382 47998682 -53874487 + L1MEc LINE L1 80 387 -6009 1422 166 24 15 chr13 47998933 47999326 -53873843 + LTR24 LTR ERV1 5 465 -2 345 248 27 60 chr13 47999500 47999636 -53873533 + L1ME2 LINE L1 6028 6160 -6 218 171 0 0 chr13 48000318 48000353 -53872816 + CT-rich Low_complexity Low_complexity 1 35 0 360 125 0 0 chr13 48001043 48001107 -53872062 + (CA)n Simple_repeat Simple_repeat 2 65 0 450 250 40 32 chr13 48001362 48001486 -53871683 - MER63 DNA MER1_type -311 751 1 208 224 52 0 chr13 48001519 48001577 -53871592 + GA-rich Low_complexity Low_complexity 5 65 0 6121 230 25 16 chr13 48001578 48004171 -53868998 - L1PA13 LINE L1 -3132 3665 1040 210 409 31 6 chr13 48004387 48004546 -53868623 + L2 LINE L2 2597 2759 -555 2250 153 62 78 chr13 48005341 48005465 -53867704 - MER4B LTR ERV1 -71 539 414 2639 26 0 7 chr13 48005465 48005774 -53867395 + AluY SINE Alu 1 307 -4 2250 153 62 78 chr13 48005774 48006197 -53866972 - MER4B LTR ERV1 -196 414 1 396 156 22 33 chr13 48006737 48006827 -53866342 + L1M4 LINE L1 4519 4607 -1539 389 237 7 74 chr13 48006837 48006972 -53866197 + L1MB7 LINE L1 6050 6175 -9 369 291 74 53 chr13 48006987 48007310 -53865859 + L1M4 LINE L1 4619 4948 -1198 330 299 32 13 chr13 48007401 48007555 -53865614 + L1M4 LINE L1 4972 5128 -1018 442 282 68 7 chr13 48007622 48007910 -53865259 - L1ME1 LINE L1 -176 5990 5662 4263 154 43 14 chr13 48007952 48008740 -53864429 + HSMAR2 DNA Mariner 13 823 -479 535 179 0 154 chr13 48008721 48008883 -53864286 + MLT2D LTR ERVL 278 414 0 * 21 0 0 0 chr13 48008977 48008998 -53864171 + AT_rich Low_complexity Low_complexity 1 21 0 223 329 142 46 chr13 48009075 48009553 -53863616 + L2 LINE L2 2138 2661 -653 1584 195 3 10 chr13 48009606 48009913 -53863256 + MER66B LTR ERV1 1 305 -181 32 26 0 0 chr13 48010238 48010277 -53862892 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr13 48010986 48011022 -53862147 + AT_rich Low_complexity Low_complexity 1 36 0 285 377 51 30 chr13 48012003 48012239 -53860930 - MIR SINE MIR -15 247 7 24 0 0 0 chr13 48013185 48013209 -53859960 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 48013390 48013418 -53859751 + AT_rich Low_complexity Low_complexity 1 28 0 254 280 50 10 chr13 48014606 48014706 -53858463 + L1MEc LINE L1 41 144 -6252 1580 220 76 14 chr13 48014749 48015172 -53857997 + MLT1C LTR MaLR 10 458 -9 828 337 65 13 chr13 48015179 48015562 -53857607 + L1MEc LINE L1 198 600 -5796 2792 249 47 58 chr13 48015740 48016735 -53856434 + L1MCa LINE L1 47 958 -5595 249 33 0 0 chr13 48016735 48016765 -53856404 + (CA)n Simple_repeat Simple_repeat 1 30 0 2792 249 47 58 chr13 48016765 48017503 -53855666 + L1MCa LINE L1 958 1702 -4851 * 5188 244 80 37 chr13 48017494 48018029 -53855140 + L1MC3 LINE L1 5855 6366 -1419 2549 33 3 0 chr13 48018029 48018366 -53854803 + L1PA4 LINE L1 5837 6174 0 5188 244 80 37 chr13 48018366 48019672 -53853497 + L1MC3 LINE L1 6366 7777 -8 508 275 55 13 chr13 48019681 48019917 -53853252 + L1MEc LINE L1 938 1183 -5213 248 281 48 30 chr13 48019949 48020116 -53853053 + L1MEc LINE L1 1216 1385 -4830 273 281 24 35 chr13 48020125 48020137 -53853032 + MER5A DNA MER1_type 83 94 -95 1813 146 27 0 chr13 48020137 48020431 -53852738 + AluJb SINE Alu 1 302 -10 273 281 24 35 chr13 48020431 48020515 -53852654 + MER5A DNA MER1_type 94 189 0 2448 246 69 47 chr13 48021120 48022014 -53851155 + L1MD2 LINE L1 5436 6349 -10 464 125 12 12 chr13 48022766 48022846 -53850323 - MER4E LTR ERV1 0 779 700 4115 68 20 2 chr13 48022950 48023505 -53849664 - L1PA7 LINE L1 -252 5902 5338 3605 100 21 5 chr13 48023502 48024070 -53849099 + L1PA7 LINE L1 4750 5326 -820 * 291 325 106 12 chr13 48024789 48024949 -53848220 + MIR SINE MIR 24 198 -64 2295 180 51 2 chr13 48026929 48027401 -53845768 + L1MA6 LINE L1 5806 6300 0 350 0 0 0 chr13 48028582 48028623 -53844546 + L1PA3 LINE L1 5941 5981 -174 1463 68 5 0 chr13 48028724 48028914 -53844255 + L1PA3 LINE L1 5965 6155 0 24 67 0 0 chr13 48029554 48029599 -53843570 + AT_rich Low_complexity Low_complexity 1 45 0 788 288 60 9 chr13 48029656 48029889 -53843280 + MIR SINE MIR 1 245 -17 27 0 0 0 chr13 48030840 48030867 -53842302 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr13 48030900 48030922 -53842247 + AT_rich Low_complexity Low_complexity 1 22 0 1238 203 4 52 chr13 48030931 48031069 -53842100 + AluJo SINE Alu 1 121 -191 300 53 0 0 chr13 48031069 48031107 -53842062 + (TA)n Simple_repeat Simple_repeat 2 39 0 1238 203 4 52 chr13 48031107 48031239 -53841930 + AluJo SINE Alu 121 258 -54 227 77 0 26 chr13 48031244 48031283 -53841886 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 24 0 0 0 chr13 48031455 48031479 -53841690 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 48031516 48031539 -53841630 + AT_rich Low_complexity Low_complexity 1 23 0 404 204 61 10 chr13 48031540 48031638 -53841531 + L1PA16 LINE L1 6048 6150 -16 2645 164 25 61 chr13 48031914 48032260 -53840909 + MER39B LTR ERV1 118 438 -215 2160 83 3 62 chr13 48032260 48032585 -53840584 - AluY SINE Alu -5 306 1 2645 164 25 61 chr13 48032585 48032792 -53840377 + MER39B LTR ERV1 438 651 -2 1003 309 55 26 chr13 48032842 48033354 -53839815 - ERVL LTR ERVL -874 4611 4118 1600 172 3 66 chr13 48033354 48033673 -53839496 + AluJb SINE Alu 7 305 -7 1003 309 55 26 chr13 48033673 48033775 -53839394 - ERVL LTR ERVL -1367 4118 4020 679 353 67 25 chr13 48033773 48034450 -53838719 - ERVL LTR ERVL -1804 3850 3146 * 855 302 52 3 chr13 48034479 48034770 -53838399 - ERVL LTR ERVL -2342 3312 3008 262 307 86 24 chr13 48034790 48035045 -53838124 - ERVL LTR ERVL -3006 2648 2374 272 263 35 70 chr13 48035794 48035908 -53837261 + MIR SINE MIR 30 139 -123 2115 121 3 0 chr13 48036276 48036574 -53836595 + AluSx SINE Alu 1 299 -13 381 102 0 0 chr13 48036919 48036978 -53836191 + (TC)n Simple_repeat Simple_repeat 2 60 0 195 42 0 0 chr13 48036978 48037002 -53836167 + (CA)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr13 48037473 48037510 -53835659 + AT_rich Low_complexity Low_complexity 1 37 0 278 105 0 0 chr13 48037977 48038015 -53835154 + tRNA-Phe-TTC tRNA tRNA 1 38 -38 21506 97 3 9 chr13 48038326 48041415 -53831754 + L1P LINE L1 3 3072 -3074 293 295 72 62 chr13 48042186 48042379 -53830790 + MIR SINE MIR 7 201 -61 225 289 0 0 chr13 48042442 48042494 -53830675 - L2 LINE L2 -17 3296 3245 497 338 180 8 chr13 48044520 48045003 -53828166 + L2 LINE L2 2039 2604 -710 888 302 70 48 chr13 48045342 48046028 -53827141 + L1MC4 LINE L1 6976 7676 -366 2538 133 14 19 chr13 48046053 48046474 -53826695 + L1MC1 LINE L1 5788 6206 -127 312 27 0 0 chr13 48046491 48046535 -53826634 + (CA)n Simple_repeat Simple_repeat 1 81 0 312 27 0 0 chr13 48046535 48046572 -53826597 + (CA)n Simple_repeat Simple_repeat 2 38 0 812 164 0 0 chr13 48046588 48046704 -53826465 - FRAM SINE Alu -47 129 14 519 261 59 64 chr13 48046840 48047243 -53825926 + L1MC5 LINE L1 6495 6823 -985 2943 120 7 4 chr13 48047512 48047971 -53825198 + L1PA11 LINE L1 5715 6174 0 221 177 0 48 chr13 48048345 48048407 -53824762 + A-rich Low_complexity Low_complexity 2 60 0 25 51 0 0 chr13 48048696 48048735 -53824434 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr13 48048845 48048880 -53824289 + AT_rich Low_complexity Low_complexity 1 35 0 16143 60 7 1 chr13 48049582 48052496 -53820673 + L1PA5 LINE L1 3194 6152 -2 2295 218 54 81 chr13 48053018 48054004 -53819165 - MER52A LTR ERV1 -4 1751 654 305 269 0 15 chr13 48054985 48055052 -53818117 - MER2 DNA MER2_type 0 345 280 207 375 83 21 chr13 48055257 48055401 -53817768 - MIR SINE MIR -92 170 18 247 327 45 71 chr13 48056914 48057183 -53815986 + L2 LINE L2 109 370 -2944 25 0 0 0 chr13 48057911 48057936 -53815233 + AT_rich Low_complexity Low_complexity 1 25 0 209 304 0 0 chr13 48058648 48058704 -53814465 - L2 LINE L2 -640 2674 2619 * 228 338 98 0 chr13 48058703 48058836 -53814333 - MIR SINE MIR -2 260 115 180 356 70 56 chr13 48060010 48060456 -53812713 - L2 LINE L2 -38 3275 2824 706 350 111 50 chr13 48060878 48062434 -53810735 - L2 LINE L2 -1205 2109 458 676 284 14 27 chr13 48063253 48063475 -53809694 - MER20 DNA MER1_type 0 219 1 1270 233 11 93 chr13 48063808 48064155 -53809014 - L1MA10 LINE L1 -10 6324 6023 2084 129 0 17 chr13 48064155 48064457 -53808712 + AluSq SINE Alu 1 297 -16 1270 233 11 93 chr13 48064457 48064573 -53808596 - L1MA10 LINE L1 -311 6023 5899 272 78 39 0 chr13 48064573 48064624 -53808545 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 7807 10 1 0 chr13 48064624 48066200 -53806969 - L1PA2 LINE L1 -18 6137 4561 182 37 37 0 chr13 48068003 48068030 -53805139 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr13 48068390 48068412 -53804757 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 48068589 48068610 -53804559 + AT_rich Low_complexity Low_complexity 1 21 0 3269 218 28 99 chr13 48070832 48072092 -53801077 + L1MCb LINE L1 1 1170 -4875 5204 167 28 39 chr13 48072112 48073747 -53799422 - L1MA4 LINE L1 -5 6295 4365 1374 216 56 10 chr13 48073747 48074159 -53799010 + L1MCb LINE L1 1205 1635 -4929 231 298 337 26 chr13 48074354 48075639 -53797530 + L2 LINE L2 600 2283 -1031 352 371 150 7 chr13 48075727 48076034 -53797135 + L2 LINE L2 2857 3207 -106 26 30 0 0 chr13 48077146 48077179 -53795990 + AT_rich Low_complexity Low_complexity 1 33 0 471 48 0 0 chr13 48078831 48078893 -53794276 + (CA)n Simple_repeat Simple_repeat 1 62 0 1011 190 0 0 chr13 48079851 48080014 -53793155 + FRAM SINE Alu 1 155 -21 674 180 0 0 chr13 48080247 48080358 -53792811 - FLAM_C SINE Alu -32 111 1 206 368 91 43 chr13 48080458 48080944 -53792225 + L2 LINE L2 2465 2973 -341 548 115 0 0 chr13 48081394 48081472 -53791697 - MADE1 DNA Mariner -1 79 2 201 204 20 0 chr13 48081706 48081755 -53791414 + (TTA)n Simple_repeat Simple_repeat 1 50 0 31 0 0 0 chr13 48082509 48082540 -53790629 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 48083188 48083209 -53789960 + AT_rich Low_complexity Low_complexity 1 21 0 717 294 31 8 chr13 48083298 48083553 -53789616 + L1MEc LINE L1 42 302 -6094 21 0 0 0 chr13 48083930 48083951 -53789218 + AT_rich Low_complexity Low_complexity 1 21 0 1361 152 34 0 chr13 48084030 48084267 -53788902 + HSMAR2 DNA Mariner 3 247 -1055 1937 157 41 19 chr13 48084271 48084634 -53788535 + THE1C LTR MaLR 1 371 -4 8235 154 54 7 chr13 48084636 48086096 -53787073 + THE1C-int LTR MaLR 6 1536 -44 6164 163 17 11 chr13 48086096 48086142 -53787027 + HSMAR2 DNA Mariner 199 243 -1059 1898 150 56 17 chr13 48086142 48086501 -53786668 + THE1C LTR MaLR 1 373 -2 6164 163 17 11 chr13 48086501 48087545 -53785624 + HSMAR2 DNA Mariner 243 1296 -6 429 275 67 20 chr13 48088228 48088377 -53784792 + MIR SINE MIR 97 252 -10 1353 153 45 150 chr13 48088617 48088838 -53784331 - MLT1C LTR MaLR -2 465 303 2175 119 3 3 chr13 48088838 48089148 -53784021 - AluSx SINE Alu -2 310 1 1353 153 45 150 chr13 48089148 48089326 -53783843 - MLT1C LTR MaLR -164 303 108 2095 109 80 9 chr13 48090678 48091028 -53782141 + THE1C LTR MaLR 1 375 0 3392 185 25 52 chr13 48091039 48092307 -53780862 + L1PB2 LINE L1 4903 6137 -14 315 333 110 40 chr13 48092419 48092647 -53780522 + L1M4 LINE L1 3594 3837 -2309 25 31 0 0 chr13 48092703 48092735 -53780434 + AT_rich Low_complexity Low_complexity 1 32 0 243 198 11 22 chr13 48092922 48093013 -53780156 + CT-rich Low_complexity Low_complexity 4 93 0 525 244 8 0 chr13 48093156 48093275 -53779894 - L1MC1 LINE L1 0 6333 6214 2313 201 25 29 chr13 48093351 48093707 -53779462 - L1MC1 LINE L1 -127 6206 5851 2023 137 3 13 chr13 48093707 48094022 -53779147 - AluSq SINE Alu -1 312 1 2313 201 25 29 chr13 48094022 48094217 -53778952 - L1MC1 LINE L1 -482 5851 5657 3988 190 8 74 chr13 48094275 48095158 -53778011 - L1MCa LINE L1 -5583 843 19 2051 60 0 0 chr13 48095344 48095612 -53777557 - L1PA4 LINE L1 0 6155 5888 183 139 0 0 chr13 48095896 48095932 -53777237 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 2078 212 48 71 chr13 48096148 48096837 -53776332 + MER61E LTR ERV1 1 776 -3 210 71 0 0 chr13 48097282 48097310 -53775859 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 57 0 0 chr13 48097392 48097427 -53775742 + AT_rich Low_complexity Low_complexity 1 35 0 232 288 136 8 chr13 48097503 48097621 -53775548 + MIR SINE MIR 118 250 -12 35 63 0 0 chr13 48098595 48098658 -53774511 + AT_rich Low_complexity Low_complexity 1 63 0 231 88 0 0 chr13 48098666 48098700 -53774469 + (TTG)n Simple_repeat Simple_repeat 1 34 0 302 286 0 0 chr13 48098907 48098991 -53774178 - MLT1I LTR MaLR 0 409 326 334 318 85 55 chr13 48099327 48099786 -53773383 + L1MC4a LINE L1 5442 5618 -546 33 43 0 0 chr13 48099887 48099934 -53773235 + AT_rich Low_complexity Low_complexity 1 47 0 318 307 14 36 chr13 48100056 48100196 -53772973 + Tigger8 DNA MER2_type 322 458 -208 21 57 0 0 chr13 48100574 48100609 -53772560 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 48101559 48101594 -53771575 + AT_rich Low_complexity Low_complexity 1 35 0 212 354 94 0 chr13 48101597 48101724 -53771445 + L3 LINE CR1 307 445 -1132 5930 200 38 10 chr13 48101967 48102382 -53770787 + L1PA16 LINE L1 3973 4375 -1791 306 0 0 0 chr13 48102382 48102416 -53770753 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 5930 200 38 10 chr13 48102416 48104119 -53769050 + L1PA16 LINE L1 4375 6153 -13 279 0 0 0 chr13 48104312 48104343 -53768826 + (CA)n Simple_repeat Simple_repeat 1 31 0 2184 125 3 0 chr13 48104916 48105228 -53767941 + AluSp SINE Alu 1 313 0 534 68 34 0 chr13 48105233 48105321 -53767848 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 294 73 0 0 chr13 48106148 48106189 -53766980 + (CA)n Simple_repeat Simple_repeat 1 41 0 2311 94 3 0 chr13 48107168 48107476 -53765693 - AluSc SINE Alu 0 309 1 363 333 134 62 chr13 48107776 48108052 -53765117 + HAL1 LINE L1 566 861 -1646 574 318 99 69 chr13 48108630 48109216 -53763953 - L2 LINE L2 -8 3305 2714 975 223 13 109 chr13 48109303 48109689 -53763480 - LTR41 LTR ERVL -7 766 418 1902 214 84 31 chr13 48109692 48110201 -53762968 + L1PB2 LINE L1 5597 6132 -19 706 226 32 21 chr13 48110433 48110623 -53762546 - LTR41 LTR ERVL -573 200 9 1276 221 31 22 chr13 48110931 48111334 -53761835 - MLT2B1 LTR ERVL -48 472 1 2772 288 109 31 chr13 48111375 48112976 -53760193 + L1ME1 LINE L1 35 1760 -4636 676 232 36 55 chr13 48112976 48113196 -53759973 + MER20 DNA MER1_type 4 219 0 243 0 0 0 chr13 48113200 48113227 -53759942 + (CCA)n Simple_repeat Simple_repeat 1 27 0 422 301 11 11 chr13 48113256 48113432 -53759737 + L1ME1 LINE L1 1826 2001 -4395 2548 196 114 33 chr13 48113439 48114131 -53759038 + LTR48 LTR ERV1 28 775 -12 227 226 7 88 chr13 48114135 48114272 -53758897 + L1ME1 LINE L1 2003 2128 -4268 1334 231 168 6 chr13 48114474 48114838 -53758331 - LTR52-int LTR ERVL -3133 423 1 760 169 19 26 chr13 48114841 48114995 -53758174 - LTR52 LTR ERVL -6 415 263 31 26 0 0 chr13 48115021 48115059 -53758110 + AT_rich Low_complexity Low_complexity 1 38 0 1130 203 15 30 chr13 48115068 48115334 -53757835 - LTR52 LTR ERVL -158 263 2 1532 261 93 3 chr13 48115350 48115943 -53757226 + L1ME1 LINE L1 4692 5337 -878 239 265 0 84 chr13 48115985 48116068 -53757101 - MER20 DNA MER1_type -74 145 70 2342 272 35 18 chr13 48116185 48117019 -53756150 + L1PA13 LINE L1 5315 6162 -1 564 308 35 38 chr13 48117015 48117304 -53755865 + L1ME1 LINE L1 5944 6231 -4 * 21 0 0 0 chr13 48119882 48119903 -53753266 + AT_rich Low_complexity Low_complexity 1 21 0 2482 55 0 0 chr13 48120009 48120317 -53752852 + AluY SINE Alu 1 308 -3 1372 200 42 3 chr13 48120601 48120886 -53752283 + AluJo SINE Alu 3 298 -14 283 234 48 8 chr13 48121336 48121460 -53751709 - L1M4 LINE L1 -3222 2924 2796 300 290 32 52 chr13 48121509 48121664 -53751505 + HERV16 LTR ERVL 3212 3363 -1633 823 198 13 75 chr13 48121671 48121898 -53751271 + L1ME LINE L1 4114 4326 -1820 1759 193 31 51 chr13 48122007 48122422 -53750747 - LTR55 LTR ERV -136 412 6 279 0 0 0 chr13 48122424 48122455 -53750714 + (CA)n Simple_repeat Simple_repeat 2 32 0 2412 241 44 83 chr13 48122456 48123400 -53749769 + L1ME LINE L1 4335 5314 -852 2251 82 0 0 chr13 48123400 48123691 -53749478 + AluY SINE Alu 1 291 -20 2412 241 44 83 chr13 48123691 48123930 -53749239 + L1ME LINE L1 5314 5442 -724 5692 50 33 0 chr13 48123930 48124650 -53748519 + L1PA4 LINE L1 5409 6152 -3 2412 241 44 83 chr13 48124650 48124839 -53748330 + L1ME LINE L1 5442 5637 -529 277 273 0 0 chr13 48124847 48124913 -53748256 + LTR16B LTR ERVL 9 74 -390 24 0 0 0 chr13 48124922 48124946 -53748223 + AT_rich Low_complexity Low_complexity 1 24 0 1964 130 7 3 chr13 48125055 48125339 -53747830 - AluSg SINE Alu -25 285 1 313 122 95 0 chr13 48125345 48125419 -53747750 - L1MA7 LINE L1 0 6291 6211 918 234 86 32 chr13 48125512 48126055 -53747114 - L1MA8 LINE L1 -102 6189 4106 404 384 26 33 chr13 48126075 48126346 -53746823 + LTR16B LTR ERVL 94 362 -102 26 30 0 0 chr13 48128494 48128527 -53744642 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 48128682 48128703 -53744466 + AT_rich Low_complexity Low_complexity 1 21 0 1868 155 26 40 chr13 48129580 48129960 -53743209 - THE1C LTR MaLR 0 375 1 221 211 28 9 chr13 48130009 48130118 -53743051 + (TA)n Simple_repeat Simple_repeat 2 112 0 208 347 56 56 chr13 48130513 48130657 -53742512 + L2 LINE L2 3167 3310 -3 378 283 39 71 chr13 48131274 48131557 -53741612 + L1MEd LINE L1 981 1254 -4865 228 292 22 0 chr13 48131755 48131844 -53741325 + HAL1 LINE L1 1553 1643 -864 27 49 0 0 chr13 48132075 48132116 -53741053 + AT_rich Low_complexity Low_complexity 1 41 0 316 338 80 13 chr13 48132742 48133056 -53740113 - L1ME3A LINE L1 -61 6109 5775 464 223 122 35 chr13 48133092 48133321 -53739848 - L1ME3A LINE L1 -492 5678 5430 236 274 96 48 chr13 48133919 48134065 -53739104 - L1MCc LINE L1 -1141 2161 1827 468 57 14 0 chr13 48134251 48134321 -53738848 - L1MA3 LINE L1 -1 6304 6234 360 188 89 0 chr13 48134322 48134423 -53738746 + L1MEd LINE L1 2291 2400 -3729 21 36 0 0 chr13 48134427 48134455 -53738714 + AT_rich Low_complexity Low_complexity 1 28 0 230 303 43 38 chr13 48134499 48134710 -53738459 - L1MCc LINE L1 -4932 1491 1280 230 404 48 0 chr13 48135345 48135491 -53737678 + L2 LINE L2 3144 3296 -17 332 308 0 19 chr13 48135749 48135853 -53737316 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 2289 121 28 6 chr13 48138212 48138568 -53734601 - THE1B LTR MaLR 0 364 1 378 277 100 33 chr13 48138572 48138843 -53734326 - L1MC5 LINE L1 -1023 6938 6650 216 350 75 25 chr13 48139010 48139130 -53734039 + MIR SINE MIR 51 176 -86 237 299 60 8 chr13 48139419 48139536 -53733633 - MIR SINE MIR 0 262 140 23 0 0 0 chr13 48139945 48139968 -53733201 + AT_rich Low_complexity Low_complexity 1 23 0 1529 199 0 21 chr13 48139969 48140260 -53732909 - AluJo SINE Alu -25 287 3 5142 176 22 43 chr13 48140274 48140466 -53732703 - L1PA16 LINE L1 -9 6157 5962 270 0 0 0 chr13 48140466 48140496 -53732673 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1772 167 4 0 chr13 48140496 48140777 -53732392 - AluSx SINE Alu -30 282 1 5142 176 22 43 chr13 48140777 48142349 -53730820 - L1PA16 LINE L1 -202 5964 4438 323 291 12 0 chr13 48142353 48142439 -53730730 + L2 LINE L2 3224 3310 -3 35 54 0 0 chr13 48142506 48142562 -53730607 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 48143474 48143498 -53729671 + AT_rich Low_complexity Low_complexity 1 24 0 696 281 72 35 chr13 48143595 48144000 -53729169 - LTR52 LTR ERVL -1 420 1 357 349 53 49 chr13 48144311 48144466 -53728703 - L2 LINE L2 -252 3061 2908 1683 199 109 79 chr13 48144466 48145000 -53728169 + MER44D DNA MER2_type 1 605 0 357 349 53 49 chr13 48145000 48145331 -53727838 - L2 LINE L2 -405 2908 2572 1093 196 5 164 chr13 48145367 48145807 -53727362 - L1P LINE L1 -1244 4902 4533 239 285 115 39 chr13 48145906 48146036 -53727133 - L2 LINE L2 -864 2450 2311 22 0 0 0 chr13 48146152 48146174 -53726995 + AT_rich Low_complexity Low_complexity 1 22 0 239 219 0 12 chr13 48148815 48148897 -53724272 + (TATG)n Simple_repeat Simple_repeat 4 84 0 205 159 0 45 chr13 48149559 48149603 -53723566 + L2 LINE L2 1971 2012 -1302 216 195 12 37 chr13 48150318 48150400 -53722769 + (TTATA)n Simple_repeat Simple_repeat 3 82 0 23 33 0 0 chr13 48150511 48150541 -53722628 + AT_rich Low_complexity Low_complexity 1 30 0 190 160 40 0 chr13 48150879 48150929 -53722240 + (TA)n Simple_repeat Simple_repeat 2 53 0 2748 13 3 0 chr13 48150936 48151246 -53721923 - AluYb8 SINE Alu -7 311 1 382 67 4 0 chr13 48151427 48151486 -53721683 - L1 LINE L1 -1351 4795 4735 25 31 0 0 chr13 48152477 48152509 -53720660 + AT_rich Low_complexity Low_complexity 1 32 0 218 255 0 0 chr13 48152727 48152778 -53720391 + GA-rich Low_complexity Low_complexity 2 52 0 281 294 112 23 chr13 48153372 48153757 -53719412 + L1ME4a LINE L1 5523 5941 -180 29 47 0 0 chr13 48154177 48154220 -53718949 + AT_rich Low_complexity Low_complexity 1 43 0 1799 216 25 42 chr13 48155089 48155561 -53717608 + MLT2C2 LTR ERVL 1 464 0 1056 249 64 70 chr13 48155701 48156221 -53716948 + MER52A LTR ERV1 275 1459 -141 231 281 0 18 chr13 48156582 48156639 -53716530 - MLT1K LTR MaLR -351 237 182 240 361 10 0 chr13 48156939 48157036 -53716133 + MIR SINE MIR 77 174 -88 264 312 93 68 chr13 48157173 48157410 -53715759 + MIR SINE MIR 6 248 -14 23 33 0 0 chr13 48158545 48158575 -53714594 + AT_rich Low_complexity Low_complexity 1 30 0 3679 131 6 34 chr13 48161232 48161859 -53711310 - MER4B LTR ERV1 0 610 1 275 326 39 0 chr13 48163212 48163341 -53709828 - L1ME1 LINE L1 -65 6101 5968 6982 245 70 18 chr13 48163345 48166427 -53706742 - L1 LINE L1 -1731 5834 2589 930 227 47 13 chr13 48166411 48166656 -53706513 + L1MD1 LINE L1 2205 2440 -4100 * 212 29 0 59 chr13 48166656 48166690 -53706479 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 930 227 47 13 chr13 48166690 48166959 -53706210 + L1MD1 LINE L1 2440 3169 -3371 1745 238 115 40 chr13 48166971 48168197 -53704972 + L1MD1 LINE L1 4610 5934 -743 1897 214 90 26 chr13 48168216 48168696 -53704473 + L1MD1 LINE L1 6043 6563 -73 1979 118 7 7 chr13 48168696 48168992 -53704177 + AluY SINE Alu 1 296 -15 1897 214 90 26 chr13 48168992 48169054 -53704115 + L1MD1 LINE L1 6563 6620 -16 225 203 85 0 chr13 48169076 48169135 -53704034 + MER3 DNA MER1_type 145 208 -1 1957 143 0 10 chr13 48170057 48170357 -53702812 + AluSx SINE Alu 1 297 -15 207 333 65 39 chr13 48170358 48170511 -53702658 - MER5A DNA MER1_type -32 157 1 21 57 0 0 chr13 48171085 48171120 -53702049 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr13 48171207 48171253 -53701916 + AT_rich Low_complexity Low_complexity 1 46 0 1824 224 25 26 chr13 48172043 48172533 -53700636 + L1MA7 LINE L1 5782 6270 -21 628 365 104 16 chr13 48172947 48173679 -53699490 + L2 LINE L2 2072 2867 -447 623 355 136 32 chr13 48173768 48174495 -53698674 + L2 LINE L2 1731 2533 -781 307 331 179 0 chr13 48174834 48174985 -53698184 - MER5A DNA MER1_type 0 189 12 22 56 0 0 chr13 48175027 48175063 -53698106 + AT_rich Low_complexity Low_complexity 1 36 0 2467 51 6 10 chr13 48176209 48176521 -53696648 + AluY SINE Alu 1 311 0 1642 153 13 20 chr13 48176751 48177051 -53696118 + L1PA15 LINE L1 5868 6165 0 244 304 0 0 chr13 48177587 48177666 -53695503 + MIR SINE MIR 183 261 -1 22 0 0 0 chr13 48181608 48181630 -53691539 + AT_rich Low_complexity Low_complexity 1 22 0 224 183 0 33 chr13 48182641 48182701 -53690468 + GA-rich Low_complexity Low_complexity 1 58 0 6183 115 11 27 chr13 48182842 48183899 -53689270 - L1M1 LINE L1 -3967 3598 2559 493 86 25 37 chr13 48183899 48183980 -53689189 + MER84 LTR ERVI 1 80 -427 1153 152 5 20 chr13 48183983 48184181 -53688988 + MER84 LTR ERVI 1 195 -312 2978 125 16 7 chr13 48184181 48184630 -53688539 + MLT2A2 LTR ERVL 1 453 0 34504 88 5 8 chr13 48184630 48189255 -53683914 + HERVL-A2-A2 LTR ERVL 1 4609 -1045 1633 175 11 0 chr13 48189296 48189565 -53683604 - AluSx SINE Alu -40 272 1 320 89 22 0 chr13 48189565 48189610 -53683559 + HERVL-A2-A2 LTR ERVL 4596 4641 -1013 1017 152 0 0 chr13 48189710 48189875 -53683294 + HERVL-A2-A2 LTR ERVL 5490 5654 0 3100 112 18 0 chr13 48189875 48190320 -53682849 + MLT2A2 LTR ERVL 1 453 0 1459 173 81 7 chr13 48190320 48190591 -53682578 + MER84 LTR ERVI 191 481 -26 13737 178 32 12 chr13 48190619 48191371 -53681798 - L1M1 LINE L1 -5015 2550 1814 216 0 0 0 chr13 48191371 48191395 -53681774 + (TC)n Simple_repeat Simple_repeat 1 24 0 13737 178 32 12 chr13 48191395 48193139 -53680030 - L1M1 LINE L1 -5751 1814 5 296 288 128 17 chr13 48193160 48193283 -53679886 - MIR SINE MIR -62 146 8 1958 156 44 22 chr13 48193530 48193895 -53679274 - THE1C LTR MaLR 0 375 3 8887 122 68 40 chr13 48193897 48195435 -53677734 - THE1C-int LTR MaLR 0 1580 1 2159 132 5 74 chr13 48195435 48195838 -53677331 - THE1C LTR MaLR 0 375 1 258 81 0 0 chr13 48196051 48196088 -53677081 + (A)n Simple_repeat Simple_repeat 1 37 0 578 278 39 29 chr13 48196664 48196869 -53676300 - MER20 DNA MER1_type -12 207 1 21 0 0 0 chr13 48198702 48198723 -53674446 + AT_rich Low_complexity Low_complexity 1 21 0 894 237 52 62 chr13 48198955 48199356 -53673813 - MLT2C1 LTR ERVL 0 397 1 324 286 117 19 chr13 48199356 48199503 -53673666 - LTR16A LTR ERVL -105 345 181 552 215 0 0 chr13 48200146 48200427 -53672742 + (TA)n Simple_repeat Simple_repeat 1 281 0 984 194 0 21 chr13 48200427 48200613 -53672556 - AluJb SINE Alu -31 281 100 4288 133 9 60 chr13 48200947 48201802 -53671367 - L1MA4A LINE L1 -6 6297 5486 226 107 119 0 chr13 48201802 48201886 -53671283 + (TA)n Simple_repeat Simple_repeat 2 95 0 220 27 54 0 chr13 48201910 48201947 -53671222 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2178 79 0 28 chr13 48201949 48202240 -53670929 - AluY SINE Alu -28 283 1 217 159 45 15 chr13 48202245 48202385 -53670784 + (TA)n Simple_repeat Simple_repeat 1 144 0 5078 206 55 16 chr13 48202386 48203717 -53669452 - L1 LINE L1 -3028 3820 2543 288 0 0 0 chr13 48203717 48203749 -53669420 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 5078 206 55 16 chr13 48203749 48203885 -53669284 - L1 LINE L1 -4305 2543 2414 183 80 0 0 chr13 48203885 48203910 -53669259 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3292 93 0 0 chr13 48203910 48204353 -53668816 - L1PA7 LINE L1 -18 6136 5694 5078 206 55 16 chr13 48204353 48204993 -53668176 - L1 LINE L1 -4433 2415 1628 303 203 0 0 chr13 48205370 48205439 -53667730 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2881 162 32 28 chr13 48207156 48207330 -53665839 - MER67C LTR ERV1 0 710 538 1422 191 157 19 chr13 48207330 48207706 -53665463 - MSTA LTR MaLR 0 428 1 2881 162 32 28 chr13 48207706 48208096 -53665073 - MER67C LTR ERV1 -172 538 144 1306 129 71 0 chr13 48208096 48208306 -53664863 + MER30 DNA MER1_type 1 225 -5 342 224 12 85 chr13 48208320 48208485 -53664684 - MER67C LTR ERV1 -557 153 1 419 186 31 21 chr13 48209372 48209469 -53663700 - LTR23 LTR ERV1 -2 435 338 195 318 81 34 chr13 48211470 48211618 -53661551 + L2 LINE L2 3120 3274 -39 216 163 0 0 chr13 48212585 48212628 -53660541 + CT-rich Low_complexity Low_complexity 2 44 0 1421 198 57 9 chr13 48213907 48214241 -53658928 - L1MB2 LINE L1 0 6171 5822 27 29 0 0 chr13 48214409 48214443 -53658726 + AT_rich Low_complexity Low_complexity 1 34 0 394 291 121 15 chr13 48214890 48215089 -53658080 - L2 LINE L2 -936 2378 2159 218 349 52 101 chr13 48216867 48217291 -53655878 + L2 LINE L2 2833 3235 -37 334 311 195 8 chr13 48217601 48217797 -53655372 - MIR SINE MIR -13 249 16 317 137 26 78 chr13 48219531 48219608 -53653561 - L1MA4A LINE L1 -6 6280 6091 25 51 0 0 chr13 48220515 48220554 -53652615 + AT_rich Low_complexity Low_complexity 1 39 0 1775 281 111 59 chr13 48220725 48222513 -53650656 - L1ME1 LINE L1 -5 6230 4477 1481 307 48 21 chr13 48222649 48223499 -53649670 - L1ME1 LINE L1 -3983 2413 1541 411 21 0 0 chr13 48223500 48223548 -53649621 + (TG)n Simple_repeat Simple_repeat 2 49 0 2085 136 19 35 chr13 48223732 48224095 -53649074 - L1PB1 LINE L1 0 6151 5793 455 0 18 0 chr13 48224095 48224150 -53649019 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 2952 148 31 55 chr13 48224202 48225196 -53647973 - L1PB1 LINE L1 -274 5877 4909 39 50 0 0 chr13 48225863 48225923 -53647246 + AT_rich Low_complexity Low_complexity 1 60 0 301 346 75 15 chr13 48226972 48227238 -53645931 - LTR33 LTR ERVL -5 516 235 484 308 28 0 chr13 48227303 48227446 -53645723 - LTR33 LTR ERVL -374 147 1 1657 309 111 37 chr13 48227446 48228518 -53644651 - L2 LINE L2 -1150 2164 1014 2608 238 15 4 chr13 48228528 48229075 -53644094 - MER68 LTR ERV1 -9 553 1 831 259 64 88 chr13 48229099 48229261 -53643908 - L2 LINE L2 -2326 988 824 1762 55 0 5 chr13 48229261 48229478 -53643691 + AluY SINE Alu 84 299 -12 831 259 64 88 chr13 48229478 48229736 -53643433 - L2 LINE L2 -2490 824 578 392 358 15 22 chr13 48229950 48230084 -53643085 - L2 LINE L2 -2804 510 378 477 275 90 10 chr13 48230225 48230425 -53642744 + L2 LINE L2 2329 2544 -770 1464 281 106 26 chr13 48231868 48232661 -53640508 + MSTC-int LTR MaLR 742 1651 0 1236 123 0 39 chr13 48232661 48232865 -53640304 + MSTC LTR MaLR 1 196 -232 628 103 0 0 chr13 48232877 48232974 -53640195 + AluJ/FRAM SINE Alu 216 312 0 1249 218 4 0 chr13 48232994 48233223 -53639946 + MSTC LTR MaLR 197 426 -2 599 223 74 0 chr13 48233225 48233373 -53639796 - MER58B DNA MER1_type -5 336 178 492 201 76 35 chr13 48233538 48233682 -53639487 - LTR45 LTR ERV1 0 525 376 2411 68 0 13 chr13 48233956 48234266 -53638903 - AluSc SINE Alu -3 306 1 432 366 42 60 chr13 48234661 48235115 -53638054 + L2 LINE L2 2827 3272 0 250 318 48 32 chr13 48235663 48235789 -53637380 - MIR SINE MIR -127 135 8 362 307 82 64 chr13 48236453 48236795 -53636374 + L1MC4a LINE L1 5729 6076 -1732 336 279 12 0 chr13 48236879 48236965 -53636204 + L1MC4 LINE L1 6617 6703 -1339 1434 221 0 23 chr13 48236974 48237281 -53635888 - AluJo SINE Alu -12 300 1 550 0 29 0 chr13 48237568 48237638 -53635531 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 368 267 42 18 chr13 48238669 48238834 -53634335 - Tigger1 DNA MER2_type -1316 1102 934 234 320 147 6 chr13 48239066 48239222 -53633947 + L1MC4 LINE L1 6695 6872 -1170 902 204 35 0 chr13 48240398 48240624 -53632545 + L1MA8 LINE L1 6058 6291 0 186 324 14 54 chr13 48240667 48240741 -53632428 - L2 LINE L2 -44 3228 3158 219 287 160 11 chr13 48242431 48242525 -53630644 - MIR SINE MIR -15 247 140 24 32 0 0 chr13 48242667 48242698 -53630471 + AT_rich Low_complexity Low_complexity 1 31 0 228 296 45 0 chr13 48242753 48242841 -53630328 + L1M4 LINE L1 4076 4167 -1979 1380 247 62 70 chr13 48242922 48243466 -53629703 + MLT1E2 LTR MaLR 52 626 0 262 264 16 31 chr13 48243466 48243595 -53629574 + L1ME1 LINE L1 6040 6166 0 221 0 35 0 chr13 48244045 48244074 -53629095 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1285 43 0 6 chr13 48244074 48244235 -53628934 - L1PA3 LINE L1 -13 6142 5983 25 0 0 0 chr13 48244679 48244704 -53628465 + AT_rich Low_complexity Low_complexity 1 25 0 1618 152 26 4 chr13 48245178 48245447 -53627722 + AluJb SINE Alu 25 299 -13 312 293 7 75 chr13 48245631 48245698 -53627471 + MIR SINE MIR 13 66 -196 6014 154 63 10 chr13 48245698 48246863 -53626306 - Tigger3b DNA MER2_type -2 1229 4 312 293 7 75 chr13 48246863 48246942 -53626227 + MIR SINE MIR 66 149 -113 2396 59 0 0 chr13 48247199 48247503 -53625666 + AluY SINE Alu 2 305 -6 30 45 0 0 chr13 48248637 48248681 -53624488 + AT_rich Low_complexity Low_complexity 1 44 0 228 111 0 0 chr13 48249305 48249341 -53623828 + (TG)n Simple_repeat Simple_repeat 1 36 0 1098 248 47 52 chr13 48250138 48250481 -53622688 + MLT1A1 LTR MaLR 25 365 0 188 339 34 0 chr13 48252222 48252281 -53620888 - MIR SINE MIR -111 97 37 186 43 0 0 chr13 48252529 48252552 -53620617 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr13 48252672 48252700 -53620469 + AT_rich Low_complexity Low_complexity 1 28 0 291 248 132 8 chr13 48253439 48253560 -53619609 + MIR SINE MIR 76 211 -51 204 350 49 8 chr13 48253849 48253972 -53619197 - L2 LINE L2 -1038 2276 2149 22 35 0 0 chr13 48254541 48254570 -53618599 + AT_rich Low_complexity Low_complexity 1 29 0 270 227 0 15 chr13 48255978 48256044 -53617125 + CT-rich Low_complexity Low_complexity 1 65 0 204 304 122 34 chr13 48256057 48256205 -53616964 + L2 LINE L2 2307 2467 -847 2488 42 0 22 chr13 48256811 48257122 -53616047 + AluY SINE Alu 1 304 -7 860 182 94 5 chr13 48257585 48257777 -53615392 + MER3 DNA MER1_type 1 209 0 407 51 0 17 chr13 48258307 48258366 -53614803 + (TA)n Simple_repeat Simple_repeat 1 58 0 26 30 0 0 chr13 48258638 48258671 -53614498 + AT_rich Low_complexity Low_complexity 1 33 0 34 72 0 0 chr13 48259697 48259766 -53613403 + AT_rich Low_complexity Low_complexity 1 69 0 325 331 130 18 chr13 48262961 48263130 -53610039 - L3 LINE CR1 -793 784 597 199 177 32 0 chr13 48264798 48264860 -53608309 + (CATA)n Simple_repeat Simple_repeat 4 67 0 21 71 0 0 chr13 48265318 48265360 -53607809 + AT_rich Low_complexity Low_complexity 1 42 0 200 323 172 0 chr13 48266390 48266483 -53606686 + L2 LINE L2 3141 3249 -23 745 316 32 20 chr13 48267886 48268133 -53605036 - MIR SINE MIR -11 251 2 233 345 76 0 chr13 48269925 48270044 -53603125 + MIR3 SINE MIR 60 187 -21 192 325 42 50 chr13 48270249 48270369 -53602800 - MIR SINE MIR -109 153 35 22 35 0 0 chr13 48270538 48270567 -53602602 + AT_rich Low_complexity Low_complexity 1 29 0 35 41 0 0 chr13 48271442 48271491 -53601678 + AT_rich Low_complexity Low_complexity 1 49 0 1164 238 53 12 chr13 48272371 48272691 -53600478 + MER58B DNA MER1_type 9 341 0 331 378 88 12 chr13 48274249 48274498 -53598671 - L3 LINE CR1 -232 1345 1078 600 288 24 0 chr13 48274886 48275056 -53598113 + L1MB1 LINE L1 4927 5100 -1046 5923 71 140 78 chr13 48275056 48275204 -53597965 + MER11A LTR ERVK 1 138 -1128 2123 109 0 7 chr13 48275204 48275506 -53597663 - AluY SINE Alu -11 300 1 5923 71 140 78 chr13 48275506 48276459 -53596710 + MER11A LTR ERVK 138 1266 0 4090 195 24 12 chr13 48276460 48277449 -53595720 + L1MB1 LINE L1 5096 6095 -73 22 70 0 0 chr13 48278427 48278470 -53594699 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 48278940 48278962 -53594207 + AT_rich Low_complexity Low_complexity 1 22 0 424 335 6 24 chr13 48279033 48279203 -53593966 + MIR SINE MIR 23 189 -73 564 84 0 0 chr13 48280524 48280607 -53592562 + (TAGA)n Simple_repeat Simple_repeat 3 85 0 389 305 107 15 chr13 48280955 48281152 -53592017 + MIR SINE MIR 48 262 0 477 124 11 0 chr13 48281227 48281315 -53591854 - MLT1A2 LTR MaLR 0 396 323 674 206 54 143 chr13 48281718 48282067 -53591102 - MLT1A2 LTR MaLR -56 318 1 382 313 57 17 chr13 48282071 48282247 -53590922 - MER112 DNA MER1_type -9 251 69 1786 153 13 19 chr13 48282284 48282598 -53590571 - AluJb SINE Alu 0 312 1 367 93 0 67 chr13 48284175 48284250 -53588919 + L1PA13 LINE L1 6092 6161 -2 56 79 0 0 chr13 48284221 48284347 -53588822 + AT_rich Low_complexity Low_complexity 1 126 0 241 390 73 6 chr13 48285197 48285374 -53587795 - L3 LINE CR1 -836 741 553 24 56 0 42 chr13 48285378 48285449 -53587720 + AT_rich Low_complexity Low_complexity 1 68 0 31 68 0 0 chr13 48285508 48285567 -53587602 + AT_rich Low_complexity Low_complexity 1 59 0 385 364 64 14 chr13 48286105 48286388 -53586781 + L3 LINE CR1 778 1074 -503 809 150 13 106 chr13 48286578 48286804 -53586365 + L1MA9 LINE L1 6086 6290 -22 2146 68 4 0 chr13 48287549 48287815 -53585354 - AluY SINE Alu -8 303 37 23 0 0 0 chr13 48287858 48287881 -53585288 + AT_rich Low_complexity Low_complexity 1 23 0 2038 182 67 0 chr13 48288398 48288799 -53584370 - MSTA LTR MaLR 0 428 1 22 80 0 0 chr13 48289621 48289671 -53583498 + AT_rich Low_complexity Low_complexity 1 50 0 184 355 13 0 chr13 48289728 48289804 -53583365 + MER5A DNA MER1_type 16 92 -97 312 289 93 41 chr13 48290444 48290638 -53582531 + L1MC4a LINE L1 5668 5871 -1937 238 176 81 14 chr13 48291539 48291613 -53581556 + L1MDb LINE L1 1129 1207 -5202 273 222 32 0 chr13 48291668 48291731 -53581438 - MER67B LTR ERV1 -9 652 588 761 211 0 34 chr13 48291734 48291881 -53581288 - MER67B LTR ERV1 -519 142 1 1256 282 57 30 chr13 48291881 48292513 -53580656 + L1MDb LINE L1 1096 1744 -4664 685 244 66 55 chr13 48292552 48292933 -53580236 + L1MDb LINE L1 1950 2334 -4074 1006 239 64 33 chr13 48293160 48293502 -53579667 + LTR48 LTR ERV1 63 393 -394 2312 192 100 45 chr13 48293502 48294191 -53578978 + LTR8A LTR ERV1 1 727 0 1006 239 64 33 chr13 48294191 48294369 -53578800 + LTR48 LTR ERV1 393 787 0 * 1333 166 55 65 chr13 48294369 48294674 -53578495 - MER34B LTR ERV1 -110 455 154 2145 198 7 34 chr13 48294673 48295118 -53578051 + LTR24 LTR ERV1 35 467 0 758 150 24 0 chr13 48295118 48295232 -53577937 - MER34B LTR ERV1 -448 117 1 226 203 16 16 chr13 48295467 48295531 -53577638 + A-rich Low_complexity Low_complexity 2 65 0 657 219 115 38 chr13 48295827 48296010 -53577159 + MER31A LTR ERV1 1 197 -288 237 292 14 0 chr13 48296136 48296208 -53576961 + LTR33A LTR ERVL 439 511 -12 225 0 0 0 chr13 48296330 48296355 -53576814 + (TG)n Simple_repeat Simple_repeat 2 26 0 722 237 47 34 chr13 48296989 48297341 -53575828 + MER110 LTR ERV1 46 457 -34 180 0 0 0 chr13 48297352 48297372 -53575797 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 451 277 192 6 chr13 48297984 48298161 -53575008 + MER20 DNA MER1_type 1 210 -9 281 281 104 24 chr13 48301107 48301271 -53571898 - MLT1L LTR MaLR -14 601 425 237 65 0 0 chr13 48301476 48301507 -53571662 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 876 301 137 41 chr13 48303195 48304087 -53569082 - L2 LINE L2 -5 3308 2321 34 84 0 0 chr13 48304984 48305067 -53568102 + AT_rich Low_complexity Low_complexity 1 83 0 26 30 0 0 chr13 48305186 48305219 -53567950 + AT_rich Low_complexity Low_complexity 1 33 0 351 381 128 18 chr13 48305657 48306151 -53567018 - L2 LINE L2 -520 2794 2247 557 302 39 31 chr13 48306200 48306458 -53566711 - MER34 LTR ERV1 -30 512 253 345 234 92 129 chr13 48306446 48306617 -53566552 - MER34 LTR ERV1 -250 292 135 * 597 175 114 0 chr13 48306617 48306731 -53566438 - FLAM_C SINE Alu -6 127 1 345 234 92 129 chr13 48306731 48306862 -53566307 - MER34 LTR ERV1 -407 135 1 7354 35 9 0 chr13 48309937 48310828 -53562341 - L1PA4 LINE L1 -3 6152 5254 2194 47 0 0 chr13 48310829 48311106 -53562063 + L1PA4 LINE L1 4972 5248 -898 285 29 0 0 chr13 48311296 48311330 -53561839 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chr13 48311468 48311495 -53561674 + (CA)n Simple_repeat Simple_repeat 2 28 0 311 368 91 21 chr13 48311655 48311940 -53561229 - L2 LINE L2 -448 2866 2562 775 228 44 66 chr13 48312583 48312811 -53560358 - MER58A DNA MER1_type -1 223 1 1666 165 9 48 chr13 48312959 48313274 -53559895 + AluJb SINE Alu 1 303 -9 227 213 0 0 chr13 48313719 48313766 -53559403 + T-rich Low_complexity Low_complexity 1 47 0 4142 79 9 0 chr13 48314892 48315459 -53557710 - L1PA8 LINE L1 -290 5882 5311 22 0 0 0 chr13 48315919 48315941 -53557228 + AT_rich Low_complexity Low_complexity 1 22 0 201 233 0 0 chr13 48316003 48316046 -53557123 - L2 LINE L2 0 3272 3230 234 356 11 0 chr13 48316595 48316682 -53556487 + MLT1K LTR MaLR 139 226 -362 21 0 0 0 chr13 48316912 48316933 -53556236 + AT_rich Low_complexity Low_complexity 1 21 0 515 312 13 34 chr13 48317193 48317430 -53555739 - L1M4 LINE L1 -2210 3936 3705 328 324 50 22 chr13 48317453 48317592 -53555577 + L1ME3A LINE L1 5828 5970 -200 1771 156 0 0 chr13 48317736 48318031 -53555138 - L1PA13 LINE L1 -1 6162 5868 6731 165 13 12 chr13 48318031 48319925 -53553244 - L1PA12 LINE L1 -234 5934 4037 1524 181 25 0 chr13 48320276 48320606 -53552563 - AluJo SINE Alu 0 337 1 265 398 28 11 chr13 48321037 48321213 -53551956 + L2 LINE L2 2914 3092 -180 387 255 20 10 chr13 48322115 48322217 -53550952 + LTR40b LTR ERVL 1 103 -359 3632 210 43 30 chr13 48322246 48323208 -53549961 - L1MC2 LINE L1 -9 6753 5780 207 123 0 70 chr13 48323210 48323267 -53549902 + (TA)n Simple_repeat Simple_repeat 1 53 0 396 114 0 82 chr13 48323451 48323635 -53549534 + (TA)n Simple_repeat Simple_repeat 1 169 0 287 121 0 96 chr13 48323672 48323870 -53549299 + (TA)n Simple_repeat Simple_repeat 2 180 0 2209 243 40 20 chr13 48323872 48324526 -53548643 - L1MC2 LINE L1 -782 5782 5116 1509 236 66 58 chr13 48324535 48325158 -53548011 - L1MC2 LINE L1 -4809 1755 1128 956 236 166 19 chr13 48325159 48325532 -53547637 + MSTC LTR MaLR 1 428 0 751 254 36 54 chr13 48325533 48325813 -53547356 - L1MC2 LINE L1 -4916 1129 855 575 165 9 36 chr13 48325810 48325938 -53547231 + L1PB4 LINE L1 5668 5790 -361 * 379 151 0 34 chr13 48325941 48326087 -53547082 + (TA)n Simple_repeat Simple_repeat 1 141 0 192 77 0 0 chr13 48326132 48326158 -53547011 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 755 191 42 0 chr13 48326163 48326331 -53546838 + L1PB4 LINE L1 5783 5957 -199 2071 152 37 18 chr13 48326585 48326986 -53546183 - L1MA4 LINE L1 -11 6289 5881 225 0 0 0 chr13 48327040 48327065 -53546104 + (CA)n Simple_repeat Simple_repeat 2 26 0 301 191 79 34 chr13 48327110 48327199 -53545970 + L1MA4 LINE L1 5782 5874 -426 1596 198 3 3 chr13 48327346 48327634 -53545535 + AluJo SINE Alu 1 288 -24 230 304 112 52 chr13 48327818 48328183 -53544986 - HAL1 LINE L1 -878 1629 1243 741 231 13 21 chr13 48328325 48328683 -53544486 - LTR27 LTR ERV1 0 636 330 1591 218 79 43 chr13 48329315 48329445 -53543724 + MER67D LTR ERV1 1 125 -389 5291 80 37 14 chr13 48329445 48330208 -53542961 + LTR17 LTR ERV1 1 780 0 1591 218 79 43 chr13 48330208 48330569 -53542600 + MER67D LTR ERV1 125 510 -4 21 0 0 0 chr13 48331805 48331826 -53541343 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 48331978 48332006 -53541163 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 48332956 48332977 -53540192 + AT_rich Low_complexity Low_complexity 1 21 0 610 266 68 36 chr13 48333218 48333468 -53539701 + MIR SINE MIR 4 261 -1 364 342 36 15 chr13 48334253 48334449 -53538720 + L2 LINE L2 1883 2082 -1232 322 311 106 28 chr13 48334694 48334874 -53538295 + L2 LINE L2 2849 3042 -230 2138 125 3 0 chr13 48335015 48335320 -53537849 + AluSp SINE Alu 1 306 -7 308 24 24 0 chr13 48335470 48335511 -53537658 + (TG)n Simple_repeat Simple_repeat 1 42 0 1291 229 51 34 chr13 48335734 48336162 -53537007 + MER39 LTR ERV1 5 650 -57 2112 129 121 5 chr13 48336162 48336542 -53536627 + MSTA LTR MaLR 5 428 0 1291 229 51 34 chr13 48336542 48336576 -53536593 + MER39 LTR ERV1 650 682 -25 1444 144 34 4 chr13 48336662 48336929 -53536240 + LTR19B LTR ERV1 316 580 0 22 0 0 0 chr13 48338388 48338410 -53534759 + AT_rich Low_complexity Low_complexity 1 22 0 266 282 13 0 chr13 48339094 48339172 -53533997 - MLT1L LTR MaLR -26 589 511 1026 272 84 52 chr13 48339608 48340034 -53533135 - MER74B LTR ERVL -82 479 37 689 171 0 8 chr13 48340046 48340163 -53533006 + FLAM_C SINE Alu 9 124 -19 22 0 0 0 chr13 48340648 48340670 -53532499 + AT_rich Low_complexity Low_complexity 1 22 0 456 221 14 126 chr13 48342335 48342581 -53530588 - L1ME2 LINE L1 -16 6146 5924 25 31 0 0 chr13 48342636 48342668 -53530501 + AT_rich Low_complexity Low_complexity 1 32 0 301 346 41 6 chr13 48342951 48343155 -53530014 - L1MEc LINE L1 -863 1713 1520 760 174 31 0 chr13 48343430 48343591 -53529578 + AluSg/x SINE Alu 132 297 -15 900 107 0 0 chr13 48343591 48343722 -53529447 + L1PB1 LINE L1 6018 6148 -3 303 175 16 0 chr13 48343739 48343802 -53529367 - MLT2F LTR ERVL -590 73 10 28 48 0 0 chr13 48344614 48344656 -53528513 + AT_rich Low_complexity Low_complexity 1 42 0 6074 129 7 3 chr13 48344747 48345723 -53527446 - L1P LINE L1 -2289 3857 2878 3918 162 52 24 chr13 48345878 48346804 -53526365 + L1MA6 LINE L1 4253 5204 -942 867 124 0 0 chr13 48346807 48346928 -53526241 - AluSc SINE Alu -188 121 1 450 255 7 20 chr13 48347012 48347165 -53526004 + L1MA6 LINE L1 5205 5355 -791 369 0 0 0 chr13 48347165 48347206 -53525963 + (CA)n Simple_repeat Simple_repeat 2 42 0 1391 170 40 56 chr13 48347271 48347594 -53525575 + L1MA6 LINE L1 5491 5808 -492 1779 178 71 33 chr13 48347596 48347990 -53525179 + L1MA6 LINE L1 5892 6300 0 6395 179 23 15 chr13 48348780 48348873 -53524296 - L1PB3 LINE L1 -35 6119 6028 2895 163 14 56 chr13 48348873 48349511 -53523658 + LTR9 LTR ERV1 1 611 -1 6395 179 23 15 chr13 48349511 48351687 -53521482 - L1PB3 LINE L1 -126 6028 3825 182 284 86 62 chr13 48351884 48351965 -53521204 + MER5B DNA MER1_type 55 137 -41 2462 261 95 37 chr13 48352071 48353322 -53519847 + L1ME1 LINE L1 4080 5403 -743 1314 214 8 8 chr13 48353326 48353583 -53519586 - AluJb SINE Alu -21 291 35 1437 270 48 48 chr13 48353646 48353924 -53519245 + L1ME1 LINE L1 5396 5673 -493 1426 201 35 7 chr13 48353924 48354051 -53519118 + AluJo SINE Alu 1 123 -189 432 0 0 0 chr13 48354051 48354099 -53519070 + (TAA)n Simple_repeat Simple_repeat 2 49 0 1426 201 35 7 chr13 48354099 48354260 -53518909 + AluJo SINE Alu 123 297 -15 1437 270 48 48 chr13 48354260 48354648 -53518521 + L1ME1 LINE L1 5672 6062 -104 23 33 0 0 chr13 48354738 48354768 -53518401 + AT_rich Low_complexity Low_complexity 1 30 0 232 326 44 61 chr13 48355223 48355631 -53517538 - L2 LINE L2 -46 3267 2864 1281 238 68 23 chr13 48355677 48356242 -53516927 + MLT1E1 LTR MaLR 1 652 -2 2249 108 0 16 chr13 48356274 48356588 -53516581 + AluSg SINE Alu 1 309 -1 978 350 57 31 chr13 48356641 48357258 -53515911 - L2 LINE L2 -784 2530 1898 191 100 0 25 chr13 48357582 48357622 -53515547 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 674 235 32 0 chr13 48358226 48358447 -53514722 - L1M4 LINE L1 -1627 4519 4292 3414 185 67 8 chr13 48358447 48358701 -53514468 + L1MA8 LINE L1 5511 5749 -542 291 93 0 0 chr13 48358701 48358744 -53514425 + (CA)n Simple_repeat Simple_repeat 2 44 0 3414 185 67 8 chr13 48358744 48359217 -53513952 + L1MA8 LINE L1 5749 6281 -10 1173 278 102 31 chr13 48359479 48359900 -53513269 - MLT2F LTR ERVL -126 537 87 377 163 31 6 chr13 48359954 48360042 -53513127 + MLT2F LTR ERVL 5 93 -535 828 87 24 0 chr13 48360045 48360171 -53512998 + L1PB1 LINE L1 5907 6035 -116 1731 139 7 25 chr13 48360173 48360454 -53512715 + AluSg SINE Alu 3 278 -32 3170 96 7 2 chr13 48360682 48361132 -53512037 + L1PA8A LINE L1 5662 6113 -18 2077 162 40 24 chr13 48361177 48361597 -53511572 - MSTA LTR MaLR -1 427 1 1450 156 148 4 chr13 48362859 48363129 -53510040 + AluSc SINE Alu 1 309 0 1220 129 0 0 chr13 48363129 48363307 -53509862 + AluSg/x SINE Alu 131 308 -2 22 35 0 0 chr13 48363505 48363534 -53509635 + AT_rich Low_complexity Low_complexity 1 29 0 182 247 200 12 chr13 48363668 48363753 -53509416 + MIR SINE MIR 150 250 -12 23 0 0 0 chr13 48364439 48364462 -53508707 + AT_rich Low_complexity Low_complexity 1 23 0 313 214 11 11 chr13 48364582 48364671 -53508498 + A-rich Low_complexity Low_complexity 2 90 0 498 294 11 0 chr13 48364686 48364863 -53508306 + A-rich Low_complexity Low_complexity 1 179 0 6925 68 0 0 chr13 48365389 48366279 -53506890 + L1PA6 LINE L1 5254 6143 -11 405 245 151 9 chr13 48366644 48366750 -53506419 - FLAM_A SINE Alu -12 121 1 227 227 0 0 chr13 48366944 48366988 -53506181 - L1ME LINE L1 -545 5619 5576 262 273 7 87 chr13 48367082 48367232 -53505937 - L1M4c LINE L1 -4654 1730 1593 307 258 97 62 chr13 48367276 48367303 -53505866 - L1MDa LINE L1 -3196 3344 3319 2255 79 10 13 chr13 48367303 48367606 -53505563 - AluY SINE Alu -3 308 7 307 258 97 62 chr13 48367606 48367849 -53505320 - L1MDa LINE L1 -3221 3319 1648 395 281 61 37 chr13 48367898 48368226 -53504943 - L1MDa LINE L1 -5185 1345 1010 429 235 76 17 chr13 48368731 48368850 -53504319 + MER58B DNA MER1_type 216 341 0 6564 118 22 78 chr13 48369012 48375311 -53497858 + L1PA7 LINE L1 12 6149 -5 37 62 0 0 chr13 48376042 48376107 -53497062 + AT_rich Low_complexity Low_complexity 1 65 0 827 339 81 36 chr13 48376237 48376656 -53496513 + L1PA16 LINE L1 54 491 -6348 11271 215 29 15 chr13 48376737 48380744 -53492425 + L1PA16 LINE L1 2812 6860 -9 494 318 47 21 chr13 48380921 48381154 -53492015 + MIR SINE MIR 2 240 -22 3673 205 35 29 chr13 48381324 48381833 -53491336 - MER6 DNA MER2_type 0 865 347 258 32 0 0 chr13 48381833 48381864 -53491305 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 3673 205 35 29 chr13 48381864 48382214 -53490955 - MER6 DNA MER2_type -518 347 1 458 381 35 35 chr13 48382220 48382595 -53490574 + L1MC/D LINE L1 5269 5643 -2165 273 303 84 72 chr13 48382634 48383050 -53490119 + L1ME LINE L1 86 506 -5564 2176 116 0 3 chr13 48383609 48383920 -53489249 + AluSg SINE Alu 1 310 0 241 36 71 18 chr13 48383973 48384029 -53489140 + A-rich Low_complexity Low_complexity 3 61 0 395 268 96 54 chr13 48384413 48384557 -53488612 + L1M4 LINE L1 4382 4519 -1627 1922 106 40 17 chr13 48384557 48384859 -53488310 - AluSp SINE Alu -4 309 1 395 268 96 54 chr13 48384859 48385027 -53488142 + L1M4 LINE L1 4519 4707 -1439 681 132 0 121 chr13 48385144 48385318 -53487851 + L1MA8 LINE L1 5948 6100 -191 1779 134 25 0 chr13 48385466 48385743 -53487426 - L1PA11 LINE L1 -40 6134 5851 2653 113 21 21 chr13 48385855 48386278 -53486891 - L1PA11 LINE L1 -338 5836 5414 * 17683 150 41 9 chr13 48386252 48386676 -53486493 - L1PBa LINE L1 -2681 4181 3772 1819 149 43 0 chr13 48386676 48386958 -53486211 - AluSx SINE Alu -18 294 1 17683 150 41 9 chr13 48386958 48390583 -53482586 - L1PBa LINE L1 -3090 3772 1 349 329 75 7 chr13 48390610 48390756 -53482413 - MIR SINE MIR -77 185 30 28 0 0 0 chr13 48391044 48391072 -53482097 + AT_rich Low_complexity Low_complexity 1 28 0 1241 18 36 0 chr13 48391436 48391602 -53481567 + (GAAA)n Simple_repeat Simple_repeat 3 174 0 23 0 0 0 chr13 48392694 48392717 -53480452 + AT_rich Low_complexity Low_complexity 1 23 0 257 296 0 14 chr13 48392982 48393053 -53480116 + (CCG)n Simple_repeat Simple_repeat 3 72 0 216 0 0 0 chr13 48394925 48394949 -53478220 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2075 115 31 0 chr13 48395625 48395912 -53477257 - AluSx SINE Alu -16 296 1 1993 103 0 0 chr13 48396230 48396518 -53476651 + AluY SINE Alu 23 310 0 253 308 159 58 chr13 48397053 48397217 -53475952 - L2 LINE L2 -2244 1070 879 2272 73 3 22 chr13 48397217 48397534 -53475635 + AluY SINE Alu 1 311 0 253 308 159 58 chr13 48397534 48397577 -53475592 - L2 LINE L2 -2435 879 842 311 279 0 49 chr13 48398490 48398612 -53474557 + MIR3 SINE MIR 82 197 -11 27 49 0 0 chr13 48399558 48399599 -53473570 + AT_rich Low_complexity Low_complexity 1 41 0 414 358 109 10 chr13 48400208 48400501 -53472668 - L2 LINE L2 -447 2867 2546 21 0 0 0 chr13 48400930 48400951 -53472218 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 48401216 48401260 -53471909 + AT_rich Low_complexity Low_complexity 1 44 0 221 340 58 10 chr13 48401263 48401366 -53471803 - L2 LINE L2 -50 3222 3115 3771 44 0 0 chr13 48401428 48401887 -53471282 + L1PA4 LINE L1 5694 6152 -3 432 314 113 61 chr13 48402522 48403079 -53470090 + L1M4 LINE L1 4298 4883 -1263 2029 224 81 55 chr13 48403088 48403908 -53469261 + L1MCa LINE L1 846 1686 -4740 432 225 62 0 chr13 48403892 48404021 -53469148 + L1MCa LINE L1 2848 2984 -3442 * 466 303 55 64 chr13 48404087 48404430 -53468739 - MLT1J LTR MaLR -61 450 111 374 321 95 48 chr13 48405504 48405903 -53467266 + L2 LINE L2 1912 2329 -985 25 31 0 0 chr13 48406140 48406172 -53466997 + AT_rich Low_complexity Low_complexity 1 32 0 364 334 53 29 chr13 48406349 48406762 -53466407 - L1ME3A LINE L1 -218 5952 5530 317 337 23 23 chr13 48407343 48407518 -53465651 + L1M4 LINE L1 5201 5375 -771 1212 260 42 17 chr13 48407518 48408041 -53465128 + L1M4 LINE L1 4326 4861 -1285 24 0 0 0 chr13 48408056 48408080 -53465089 + AT_rich Low_complexity Low_complexity 1 24 0 1448 200 7 27 chr13 48408082 48408377 -53464792 - AluJo SINE Alu -19 293 5 700 341 25 6 chr13 48408560 48408874 -53464295 - L1ME1 LINE L1 -1 6165 5846 923 205 62 16 chr13 48408882 48409126 -53464043 - L1MA9 LINE L1 -5 6307 6053 195 184 0 0 chr13 48409443 48409481 -53463688 + (CA)n Simple_repeat Simple_repeat 1 38 0 29 47 0 0 chr13 48409706 48409749 -53463420 + AT_rich Low_complexity Low_complexity 1 43 0 2400 69 0 0 chr13 48410350 48410654 -53462515 - AluY SINE Alu -7 304 1 1614 153 0 4 chr13 48410657 48410918 -53462251 - AluSx SINE Alu -7 305 46 2080 70 19 60 chr13 48411177 48411491 -53461678 + AluY SINE Alu 2 302 -9 1001 219 77 54 chr13 48411531 48411885 -53461284 + MLT1A1 LTR MaLR 1 454 -3 21 36 0 0 chr13 48411944 48411972 -53461197 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 48413020 48413041 -53460128 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 48414753 48414788 -53458381 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 48415681 48415709 -53457460 + AT_rich Low_complexity Low_complexity 1 28 0 183 133 0 0 chr13 48415884 48415914 -53457255 + L2 LINE L2 3243 3272 0 422 334 110 27 chr13 48416432 48416996 -53456173 - L2 LINE L2 -1 3312 2702 879 280 106 37 chr13 48417044 48417534 -53455635 + L1ME3A LINE L1 5644 6167 -3 312 307 134 38 chr13 48417538 48417828 -53455341 - L2 LINE L2 -610 2704 2387 300 257 64 119 chr13 48417861 48418079 -53455090 - L2 LINE L2 -1229 2085 1880 45 0 0 0 chr13 48418599 48418644 -53454525 + AT_rich Low_complexity Low_complexity 1 45 0 1336 231 56 23 chr13 48420525 48421074 -53452095 - MER67C LTR ERV1 -1 513 1 2180 106 0 20 chr13 48421115 48421417 -53451752 - AluSg SINE Alu -14 296 1 2002 134 3 0 chr13 48421804 48422122 -53451047 + AluSx SINE Alu 1 319 0 1020 253 49 19 chr13 48422184 48422525 -53450644 + MLT1A1 LTR MaLR 1 364 -1 6564 199 12 36 chr13 48422528 48423488 -53449681 - ERVL LTR ERVL -131 5633 4652 3475 141 2 2 chr13 48423488 48424012 -53449157 + MER1A DNA MER1_type 1 524 -3 6564 199 12 36 chr13 48424012 48424426 -53448743 - ERVL LTR ERVL -1112 4652 4290 2130 101 17 0 chr13 48424426 48424722 -53448447 - AluSp SINE Alu -12 301 1 6564 199 12 36 chr13 48424722 48424747 -53448422 - ERVL LTR ERVL -1474 4290 4266 3936 147 24 2 chr13 48424737 48425369 -53447800 - ERVL LTR ERVL -2641 3123 2478 * 28 61 0 0 chr13 48425934 48425983 -53447186 + AT_rich Low_complexity Low_complexity 1 49 0 1080 262 57 21 chr13 48426112 48426400 -53446769 + Charlie5 DNA MER1_type 33 342 -2282 5986 213 95 30 chr13 48426400 48428049 -53445120 + MER52A LTR ERV1 1 1755 0 1080 262 57 21 chr13 48428049 48428184 -53444985 + Charlie5 DNA MER1_type 342 471 -2153 936 176 67 9 chr13 48428333 48428543 -53444626 - L1MB2 LINE L1 0 6171 5950 264 30 0 0 chr13 48428543 48428576 -53444593 + (TC)n Simple_repeat Simple_repeat 2 34 0 1206 247 82 0 chr13 48428642 48428998 -53444171 - L1M4 LINE L1 -897 5249 4865 2810 224 60 42 chr13 48429005 48430046 -53443123 + Charlie5 DNA MER1_type 502 1561 -1051 930 234 102 11 chr13 48430109 48430259 -53442910 + Charlie5 DNA MER1_type 2136 2271 -353 2119 114 17 3 chr13 48430259 48430558 -53442611 - AluSx SINE Alu -9 303 1 930 234 102 11 chr13 48430558 48430848 -53442321 + Charlie5 DNA MER1_type 2271 2616 -8 198 224 35 0 chr13 48431110 48431195 -53441974 + CT-rich Low_complexity Low_complexity 1 88 0 257 280 9 47 chr13 48432074 48432181 -53440988 + L2 LINE L2 2272 2374 -940 237 398 24 19 chr13 48432302 48432513 -53440656 + L2 LINE L2 2528 2739 -575 210 250 0 0 chr13 48433366 48433414 -53439755 + L2 LINE L2 3264 3311 -2 21 0 0 0 chr13 48433773 48433794 -53439375 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 48434173 48434194 -53438975 + AT_rich Low_complexity Low_complexity 1 21 0 276 149 0 0 chr13 48434227 48434274 -53438895 + (A)n Simple_repeat Simple_repeat 1 47 0 21 71 0 0 chr13 48434553 48434595 -53438574 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr13 48435234 48435265 -53437904 + AT_rich Low_complexity Low_complexity 1 31 0 282 118 0 20 chr13 48435418 48435469 -53437700 - MLT2A1 LTR ERVL 0 444 395 * 1088 96 6 0 chr13 48435467 48435624 -53437545 - MLT2A1 LTR ERVL -286 158 1 220 202 21 32 chr13 48435631 48435725 -53437444 + GA-rich Low_complexity Low_complexity 2 94 0 442 329 170 28 chr13 48435732 48436273 -53436896 + HAL1 LINE L1 1049 1666 -841 23 33 0 0 chr13 48436573 48436603 -53436566 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr13 48437542 48437581 -53435588 + AT_rich Low_complexity Low_complexity 1 39 0 780 129 43 0 chr13 48437978 48438118 -53435051 - L1PA16 LINE L1 0 6817 6672 7896 176 15 18 chr13 48438169 48440038 -53433131 - L1PA16 LINE L1 -512 6300 4422 5846 155 21 1 chr13 48440071 48441049 -53432120 - L1PA16 LINE L1 -4509 2278 1281 36 77 0 0 chr13 48441218 48441296 -53431873 + AT_rich Low_complexity Low_complexity 1 78 0 949 154 0 6 chr13 48441791 48441953 -53431216 + L1MA4 LINE L1 6131 6291 -9 23 0 0 0 chr13 48442632 48442655 -53430514 + AT_rich Low_complexity Low_complexity 1 23 0 1946 288 62 6 chr13 48443802 48444624 -53428545 + MER63C DNA MER1_type 63 930 0 26 64 0 0 chr13 48444957 48445004 -53428165 + AT_rich Low_complexity Low_complexity 1 47 0 353 322 161 18 chr13 48445420 48445706 -53427463 - L1MEd LINE L1 -2987 3142 2816 475 127 227 0 chr13 48445836 48445946 -53427223 - L1PA16 LINE L1 -4 6162 6028 15563 207 64 21 chr13 48445946 48449469 -53423700 - L1PA16 LINE L1 -79 6790 3417 1728 126 0 0 chr13 48449469 48449723 -53423446 - AluSx SINE Alu -3 309 56 15563 207 64 21 chr13 48449723 48451694 -53421475 - L1PA16 LINE L1 -3452 3417 959 2351 148 82 0 chr13 48451694 48452086 -53421083 - MSTA LTR MaLR -4 424 1 15563 207 64 21 chr13 48452086 48453086 -53420083 - L1PA16 LINE L1 -5910 959 3 21 36 0 0 chr13 48453501 48453529 -53419640 + AT_rich Low_complexity Low_complexity 1 28 0 411 308 97 50 chr13 48454057 48454378 -53418791 - L1M4 LINE L1 -1314 4832 4497 222 91 0 0 chr13 48454536 48454569 -53418600 + (TG)n Simple_repeat Simple_repeat 2 34 0 386 371 46 18 chr13 48454590 48454873 -53418296 - L1M4 LINE L1 -1892 4254 3964 305 329 100 29 chr13 48455111 48455281 -53417888 - L1MEd LINE L1 -4890 1229 1048 23 0 0 0 chr13 48455497 48455520 -53417649 + AT_rich Low_complexity Low_complexity 1 23 0 2113 206 27 8 chr13 48455672 48456147 -53417022 - L1MC3 LINE L1 -295 7490 7007 1780 197 30 38 chr13 48456147 48456708 -53416461 - MLT2A2 LTR ERVL 0 554 1 3138 236 63 16 chr13 48456712 48457648 -53415521 - L1MC3 LINE L1 -779 7006 6027 430 352 121 15 chr13 48458010 48458348 -53414821 - L2 LINE L2 -108 3205 2832 1565 197 27 6 chr13 48458371 48458706 -53414463 - L1M3c LINE L1 -4868 1273 932 21 71 0 0 chr13 48459419 48459461 -53413708 + AT_rich Low_complexity Low_complexity 1 42 0 3270 165 65 15 chr13 48460059 48460677 -53412492 + MER72 LTR ERV1 48 696 -26 225 360 159 24 chr13 48460883 48461222 -53411947 - L2 LINE L2 -480 2834 2450 1330 175 42 33 chr13 48461372 48461707 -53411462 + Tigger2a DNA MER2_type 2 436 -8 1363 165 4 13 chr13 48462075 48462311 -53410858 - AluSx SINE Alu -78 234 1 317 312 40 16 chr13 48462553 48462678 -53410491 + L1 LINE L1 3641 3768 -2378 2034 147 0 0 chr13 48463410 48463722 -53409447 - AluSx SINE Alu 0 312 1 4590 202 47 2 chr13 48463860 48465479 -53407690 - L1PB4 LINE L1 -3 6153 4484 803 201 103 0 chr13 48465592 48465776 -53407393 - Tigger1 DNA MER2_type 0 2418 2216 1225 161 41 0 chr13 48465776 48466111 -53407058 + L1M1 LINE L1 5160 5509 -743 607 243 14 27 chr13 48466112 48466260 -53406909 - Tigger1 DNA MER2_type -2051 367 222 25 51 0 0 chr13 48466497 48466536 -53406633 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr13 48467507 48467544 -53405625 + AT_rich Low_complexity Low_complexity 1 37 0 342 0 0 0 chr13 48468709 48468747 -53404422 + (CA)n Simple_repeat Simple_repeat 2 39 0 29 47 0 0 chr13 48468862 48468905 -53404264 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr13 48469096 48469121 -53404048 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr13 48469419 48469441 -53403728 + (TG)n Simple_repeat Simple_repeat 1 22 0 3307 212 30 1 chr13 48470052 48470778 -53402391 + L1MB8 LINE L1 5432 6178 0 38 22 0 0 chr13 48470906 48470951 -53402218 + AT_rich Low_complexity Low_complexity 1 45 0 511 15 29 0 chr13 48471369 48471437 -53401732 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 21 0 0 0 chr13 48471753 48471774 -53401395 + AT_rich Low_complexity Low_complexity 1 21 0 1107 163 59 8 chr13 48471981 48472220 -53400949 + LTR1 LTR ERV1 1 251 -534 2037 125 34 12 chr13 48472370 48472690 -53400479 + LTR1 LTR ERV1 441 767 -18 22 35 0 0 chr13 48472966 48472995 -53400174 + AT_rich Low_complexity Low_complexity 1 29 0 1357 182 0 91 chr13 48473385 48473726 -53399443 - AluSx SINE Alu -2 310 1 339 132 49 14 chr13 48473777 48473921 -53399248 + (TA)n Simple_repeat Simple_repeat 1 149 0 786 274 0 0 chr13 48474265 48474433 -53398736 - AluJo SINE Alu -23 289 122 4165 207 26 9 chr13 48474947 48475321 -53397848 + MER6 DNA MER2_type -11 355 -510 2703 57 0 8 chr13 48475321 48475672 -53397497 + L1PA7 LINE L1 5807 6154 0 4165 207 26 9 chr13 48475672 48476152 -53397017 + MER6 DNA MER2_type 355 858 -7 23 0 0 0 chr13 48476530 48476553 -53396616 + AT_rich Low_complexity Low_complexity 1 23 0 740 280 14 10 chr13 48477102 48477309 -53395860 + MIR SINE MIR 6 213 -49 25 75 0 0 chr13 48477384 48477437 -53395732 + AT_rich Low_complexity Low_complexity 1 53 0 647 165 0 0 chr13 48477593 48477714 -53395455 - L1MA9 LINE L1 -10 6302 6182 4837 197 42 26 chr13 48477901 48479929 -53393240 - L1MA4 LINE L1 -107 6193 4120 716 320 91 30 chr13 48479904 48480376 -53392793 - L1M2b LINE L1 -5452 1757 1257 * 2590 226 15 7 chr13 48480362 48480903 -53392266 - L1M2b LINE L1 -6664 545 1 11234 162 50 29 chr13 48480928 48483084 -53390085 + Tigger1 DNA MER2_type 219 2418 0 237 365 12 0 chr13 48483300 48483385 -53389784 + L2 LINE L2 3007 3092 -180 26 30 0 0 chr13 48486333 48486366 -53386803 + AT_rich Low_complexity Low_complexity 1 33 0 212 338 80 24 chr13 48487033 48487246 -53385923 - MIR SINE MIR -16 246 22 303 335 39 19 chr13 48487261 48487467 -53385702 + MER63A DNA MER1_type 1 210 0 1356 188 47 112 chr13 48487799 48488183 -53384986 + MLT1A1 LTR MaLR 1 359 -6 343 290 62 40 chr13 48488415 48488639 -53384530 + L1ME LINE L1 737 965 -5105 2567 111 44 2 chr13 48488743 48489175 -53383994 + L1PB3 LINE L1 1603 2052 -4811 12901 207 31 23 chr13 48489179 48489642 -53383527 + L1PB3 LINE L1 2854 3312 -3558 2693 16 0 10 chr13 48489642 48489952 -53383217 + AluYa5 SINE Alu 1 307 -4 12901 207 31 23 chr13 48489952 48493474 -53379695 + L1PB3 LINE L1 3312 6868 -2 225 301 116 15 chr13 48493685 48493884 -53379285 + L1ME LINE L1 1000 1218 -5043 903 62 86 0 chr13 48493885 48494013 -53379156 + MER85 DNA T2_type 1 139 0 192 179 0 0 chr13 48494058 48494097 -53379072 + GA-rich Low_complexity Low_complexity 2 40 0 470 289 79 53 chr13 48494111 48494377 -53378792 + L1ME LINE L1 1275 1547 -4714 243 231 0 31 chr13 48494965 48495030 -53378139 + MLT1J2 LTR MaLR 364 426 -24 22 0 0 0 chr13 48495521 48495543 -53377626 + AT_rich Low_complexity Low_complexity 1 22 0 1574 234 54 19 chr13 48496528 48496956 -53376213 - MLT1D LTR MaLR 0 505 63 392 180 63 9 chr13 48496944 48497055 -53376114 - MER95 LTR ERV -4 427 311 * 1446 168 30 4 chr13 48497279 48497541 -53375628 - MSTA LTR MaLR 0 428 160 234 325 77 0 chr13 48497601 48497718 -53375451 + MLT1L LTR MaLR 448 573 -42 266 377 55 7 chr13 48497776 48497922 -53375247 - L2 LINE L2 -256 3057 2905 560 336 114 38 chr13 48497960 48498594 -53374575 - L2 LINE L2 -480 2834 2153 22 0 0 0 chr13 48498683 48498705 -53374464 + AT_rich Low_complexity Low_complexity 1 22 0 1565 180 6 35 chr13 48499125 48499442 -53373727 + AluJb SINE Alu 3 310 -2 296 189 56 33 chr13 48500090 48500180 -53372989 - MLT1I LTR MaLR -4 405 314 442 254 41 71 chr13 48500972 48501116 -53372053 - MER4C LTR ERV1 0 465 327 1886 162 0 3 chr13 48501116 48501413 -53371756 - AluSq SINE Alu -17 296 1 442 254 41 71 chr13 48501413 48501465 -53371704 - MER4C LTR ERV1 -138 327 275 307 241 0 24 chr13 48501480 48501563 -53371606 - LTR59 LTR ERV1 -171 426 346 * 854 211 17 134 chr13 48501537 48502024 -53371145 - MER4A LTR ERV1 -205 456 3 214 354 10 21 chr13 48502031 48502127 -53371042 + MIR SINE MIR 71 165 -97 21 36 0 0 chr13 48502354 48502382 -53370787 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 48503436 48503468 -53369701 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 48503926 48503954 -53369215 + AT_rich Low_complexity Low_complexity 1 28 0 316 247 12 0 chr13 48503984 48504069 -53369100 - MER92B LTR ERV1 -2 634 549 929 214 23 0 chr13 48504069 48504242 -53368927 - MER7A DNA MER2_type 0 337 161 2142 211 130 71 chr13 48504263 48504993 -53368176 + LTR19C LTR ERV1 7 779 0 788 131 22 29 chr13 48504993 48505119 -53368050 - MER7A DNA MER2_type -206 140 18 2015 116 0 3 chr13 48505416 48505737 -53367432 + AluSq SINE Alu 1 320 0 24 32 0 0 chr13 48506036 48506067 -53367102 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr13 48506811 48506848 -53366321 + AT_rich Low_complexity Low_complexity 1 37 0 225 353 0 0 chr13 48507076 48507144 -53366025 - L2 LINE L2 -2 3270 3203 183 362 0 14 chr13 48509122 48509191 -53363978 + L2 LINE L2 3246 3313 0 247 326 14 49 chr13 48509376 48509520 -53363649 + L1MEc LINE L1 44 182 -6214 1672 188 56 91 chr13 48509733 48510010 -53363159 + MLT1C LTR MaLR 1 255 -212 1529 101 0 0 chr13 48510010 48510219 -53362950 + AluY SINE Alu 94 302 -9 1672 188 56 91 chr13 48510219 48510425 -53362744 + MLT1C LTR MaLR 255 467 0 12869 179 24 5 chr13 48510748 48513115 -53360054 + Tigger1 DNA MER2_type 6 2418 0 281 397 88 15 chr13 48513507 48513915 -53359254 - L2 LINE L2 -453 2861 2424 1607 167 61 25 chr13 48514216 48514576 -53358593 - THE1C LTR MaLR 0 375 3 9363 149 24 8 chr13 48514583 48516131 -53357038 - THE1C-int LTR MaLR -6 1574 3 1802 147 54 35 chr13 48516133 48516501 -53356668 - THE1C LTR MaLR 0 375 1 211 151 47 105 chr13 48516577 48516663 -53356506 + L2 LINE L2 1605 1685 -1629 262 368 82 14 chr13 48517142 48517362 -53355807 - MLT1I LTR MaLR -40 369 135 1085 266 55 33 chr13 48517542 48517903 -53355266 - MLT1A2 LTR MaLR -2 372 4 624 265 60 0 chr13 48518097 48518297 -53354872 - L1ME2 LINE L1 -33 6131 5920 30646 116 13 54 chr13 48518315 48524744 -53348425 - L1PA7 LINE L1 -3 6151 1 328 261 79 45 chr13 48524750 48525070 -53348099 - L1ME2 LINE L1 -262 5902 5562 392 253 0 1 chr13 48525095 48525204 -53347965 - L1ME2 LINE L1 -1413 4733 4626 1928 146 9 29 chr13 48525469 48525784 -53347385 + AluSc SINE Alu 1 309 0 1582 134 3 103 chr13 48526290 48526610 -53346559 + AluSx SINE Alu 1 288 -24 578 158 61 0 chr13 48527070 48527184 -53345985 - L1MB1 LINE L1 0 6168 6048 658 385 52 5 chr13 48527985 48528367 -53344802 + ERVL LTR ERVL 1066 1465 -3531 1623 338 60 28 chr13 48528418 48528979 -53344190 + ERVL LTR ERVL 1585 2189 -2807 1458 279 76 8 chr13 48528979 48529463 -53343706 + LTR40a LTR ERVL 3 519 0 1623 338 60 28 chr13 48529463 48529831 -53343338 + ERVL LTR ERVL 2189 2544 -2452 546 317 127 42 chr13 48529928 48530525 -53342644 + ERVL LTR ERVL 4324 4971 -793 2232 122 37 8 chr13 48530525 48530879 -53342290 - THE1B LTR MaLR 0 364 1 2551 119 42 5 chr13 48530879 48531265 -53341904 - THE1B-int LTR MaLR 0 1580 1181 1972 139 3 19 chr13 48531390 48531700 -53341469 + AluSc SINE Alu 1 305 -4 442 342 105 56 chr13 48532857 48533504 -53339665 + L2 LINE L2 2178 2856 -458 3945 117 34 2 chr13 48535223 48535838 -53337331 + MER41B LTR ERV1 1 635 0 841 172 19 0 chr13 48536115 48536272 -53336897 + LTR8A LTR ERV1 1 160 -567 1462 135 37 0 chr13 48536287 48536532 -53336637 - L1PA14 LINE L1 -3 6158 5905 3685 107 70 45 chr13 48536532 48537108 -53336061 + L1PA14 LINE L1 5198 5796 -365 252 0 0 0 chr13 48537108 48537136 -53336033 + (CATATA)n Simple_repeat Simple_repeat 5 32 0 3685 107 70 45 chr13 48537136 48537248 -53335921 + L1PA14 LINE L1 5796 5904 -257 2575 169 56 58 chr13 48537248 48537799 -53335370 + LTR8 LTR ERV1 138 687 -4 959 324 72 7 chr13 48537833 48538275 -53334894 + L2 LINE L2 2163 2633 -681 29 70 0 0 chr13 48538320 48538377 -53334792 + AT_rich Low_complexity Low_complexity 1 57 0 621 182 100 12 chr13 48538401 48538571 -53334598 - MER58 DNA MER1_type -32 2388 2204 699 273 85 78 chr13 48538680 48539343 -53333826 + L2 LINE L2 2631 3313 0 286 250 12 0 chr13 48539579 48539663 -53333506 + (TA)n Simple_repeat Simple_repeat 1 85 0 310 316 79 14 chr13 48539761 48539900 -53333269 - ERVL LTR ERVL -1015 4749 4602 1971 105 0 51 chr13 48540669 48540984 -53332185 - AluSg SINE Alu -11 299 1 21 36 0 0 chr13 48541414 48541442 -53331727 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 48542178 48542199 -53330970 + AT_rich Low_complexity Low_complexity 1 21 0 3005 62 20 12 chr13 48542266 48542667 -53330502 + MLT2A1 LTR ERVL 1 404 -40 312 143 54 0 chr13 48542667 48542779 -53330390 + (TA)n Simple_repeat Simple_repeat 2 119 0 316 119 0 34 chr13 48542781 48542840 -53330329 + MLT2A1 LTR ERVL 397 453 0 233 160 20 0 chr13 48543411 48543461 -53329708 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 248 233 55 0 chr13 48544663 48544736 -53328433 - MER116 DNA Mariner 0 80 4 192 299 0 93 chr13 48544949 48545056 -53328113 - L2 LINE L2 -4 3309 3213 188 216 20 20 chr13 48545029 48545080 -53328089 - MIR SINE MIR -99 109 59 * 28 0 0 0 chr13 48545791 48545819 -53327350 + AT_rich Low_complexity Low_complexity 1 28 0 591 263 90 0 chr13 48546523 48546679 -53326490 + MER5B DNA MER1_type 7 176 -2 647 336 63 39 chr13 48546748 48547179 -53325990 + L2 LINE L2 2873 3313 0 217 259 0 0 chr13 48548216 48548270 -53324899 + (TA)n Simple_repeat Simple_repeat 2 55 0 2522 232 72 50 chr13 48549082 48550324 -53322845 + L1MCb LINE L1 5 1268 -4952 216 0 0 0 chr13 48550324 48550348 -53322821 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2522 232 72 50 chr13 48550348 48550456 -53322713 + L1MCb LINE L1 1268 1372 -4848 1766 259 86 15 chr13 48550454 48551198 -53321971 - L1M4 LINE L1 -753 5393 4597 * 1111 119 0 0 chr13 48551199 48551350 -53321819 + AluSq SINE Alu 146 296 -17 473 278 45 40 chr13 48551677 48551875 -53321294 + MER57B-int LTR ERV1 6954 7152 -664 487 158 21 36 chr13 48552010 48552130 -53321039 + MER57B-int LTR ERV1 7208 7537 0 1367 96 0 0 chr13 48552130 48552308 -53320861 + MER57B LTR ERV1 3 180 -254 14283 129 17 21 chr13 48552309 48554605 -53318564 - MER57B-int LTR ERV1 -3569 3968 1682 1469 209 12 0 chr13 48554572 48554831 -53318338 - MER57B-int LTR ERV1 -5324 622 361 * 5338 134 11 4 chr13 48554825 48555624 -53317545 - MER57B-int LTR ERV1 -6732 805 1 2526 165 19 5 chr13 48555627 48556052 -53317117 - MER57B LTR ERV1 -3 431 1 245 240 0 0 chr13 48556210 48556260 -53316909 + GA-rich Low_complexity Low_complexity 3 52 0 2148 251 60 35 chr13 48556261 48557138 -53316031 + L1MC2 LINE L1 4416 5314 -832 * 4038 210 48 9 chr13 48557125 48558827 -53314342 + L1PB4 LINE L1 4387 6154 -2 3603 211 71 25 chr13 48558823 48559622 -53313547 + L1MC2 LINE L1 5283 6140 -204 * 2147 110 0 0 chr13 48559622 48559923 -53313246 + AluY SINE Alu 3 303 -8 3603 211 71 25 chr13 48559923 48560137 -53313032 + L1MC2 LINE L1 6140 6343 -1 23 54 0 0 chr13 48560319 48560356 -53312813 + AT_rich Low_complexity Low_complexity 1 37 0 1256 207 57 51 chr13 48560467 48560801 -53312368 + MLT1A1 LTR MaLR 11 346 -19 704 199 111 0 chr13 48561874 48562045 -53311124 - Tigger2 DNA MER2_type 0 2718 2529 5926 78 26 5 chr13 48562048 48562856 -53310313 - L1PA8 LINE L1 -20 6152 5328 387 21 0 0 chr13 48562858 48562905 -53310264 + U2 snRNA snRNA 14 60 -128 * 1328 134 71 8 chr13 48562902 48563156 -53310013 - Tigger2 DNA MER2_type -176 2542 2273 23 86 0 0 chr13 48563228 48563286 -53309883 + AT_rich Low_complexity Low_complexity 1 58 0 249 303 103 58 chr13 48564359 48564514 -53308655 - MIR SINE MIR -56 206 45 1973 66 4 0 chr13 48564534 48564776 -53308393 - AluY SINE Alu -14 297 55 2061 114 10 0 chr13 48564905 48565204 -53307965 + AluSp SINE Alu 1 302 -11 1672 237 108 3 chr13 48565271 48565854 -53307315 + L1M4 LINE L1 4639 5282 -864 31 0 0 0 chr13 48565854 48565885 -53307284 + AT_rich Low_complexity Low_complexity 1 31 0 238 302 78 8 chr13 48565885 48566014 -53307155 + L1ME2 LINE L1 6017 6154 -10 247 289 44 0 chr13 48566164 48566278 -53306891 + L1MC4 LINE L1 7924 8042 0 1949 146 3 13 chr13 48566460 48566775 -53306394 - AluJo SINE Alu 0 312 1 30 45 0 0 chr13 48566879 48566923 -53306246 + AT_rich Low_complexity Low_complexity 1 44 0 1284 231 53 75 chr13 48567301 48567718 -53305451 + MLT1C LTR MaLR 4 411 -56 2463 139 10 0 chr13 48567718 48568113 -53305056 - MER57A LTR ERV1 0 403 5 1284 231 53 75 chr13 48568113 48568162 -53305007 + MLT1C LTR MaLR 411 460 -7 342 320 8 0 chr13 48568166 48568291 -53304878 + (TA)n Simple_repeat Simple_repeat 2 127 0 27 73 0 0 chr13 48568869 48568924 -53304245 + AT_rich Low_complexity Low_complexity 1 55 0 23 68 0 0 chr13 48569031 48569075 -53304094 + AT_rich Low_complexity Low_complexity 1 44 0 34 24 0 0 chr13 48571163 48571204 -53301965 + AT_rich Low_complexity Low_complexity 1 41 0 12796 112 11 4 chr13 48571259 48573214 -53299955 - L1P LINE L1 -1687 4459 2491 5369 122 0 7 chr13 48573212 48574041 -53299128 + L1P LINE L1 4463 5285 -861 * 254 81 0 0 chr13 48574041 48574078 -53299091 - L1P LINE L1 -985 5161 5125 234 270 0 0 chr13 48574168 48574231 -53298938 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 21 0 0 0 chr13 48575133 48575154 -53298015 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 48576747 48576773 -53296396 + AT_rich Low_complexity Low_complexity 1 26 0 1663 181 17 7 chr13 48578770 48579062 -53294107 + AluJo SINE Alu 1 295 -17 2209 110 0 0 chr13 48579073 48579373 -53293796 + AluY SINE Alu 12 311 0 1641 158 25 0 chr13 48579453 48579738 -53293431 + AluSx SINE Alu 5 296 -16 23 0 0 0 chr13 48579738 48579761 -53293408 + AT_rich Low_complexity Low_complexity 1 23 0 5054 186 31 14 chr13 48579937 48581055 -53292114 - L1MA4 LINE L1 -908 5238 4102 5733 115 32 65 chr13 48581062 48581251 -53291918 + L1MA4 LINE L1 5254 5448 -852 2022 137 0 0 chr13 48581251 48581543 -53291626 + AluSx SINE Alu 1 292 -20 297 0 0 0 chr13 48581547 48581580 -53291589 + (TG)n Simple_repeat Simple_repeat 2 34 0 5733 115 32 65 chr13 48581580 48582457 -53290712 + L1MA4 LINE L1 5451 6289 -11 202 158 26 0 chr13 48583035 48583073 -53290096 + (TAA)n Simple_repeat Simple_repeat 1 39 0 306 333 122 11 chr13 48583081 48583261 -53289908 - MIR SINE MIR -48 214 15 24 96 0 0 chr13 48583576 48583649 -53289520 + AT_rich Low_complexity Low_complexity 1 73 0 271 64 21 43 chr13 48584148 48584195 -53288974 + LTR14B LTR ERVK 1 46 -562 * 2034 116 100 24 chr13 48584183 48584553 -53288616 + LTR14B LTR ERVK 211 608 0 4989 81 78 4 chr13 48584553 48585284 -53287885 + HERVK14 LTR ERVK 1 785 -5160 8751 72 13 20 chr13 48585327 48586518 -53286651 + HERV17 LTR ERV1 835 2016 -6610 * 9194 66 47 19 chr13 48586501 48587791 -53285378 + HERV17 LTR ERV1 2430 3754 -4872 1222 40 0 0 chr13 48587770 48587918 -53285251 + HERV17 LTR ERV1 5405 5552 -3074 * 323 62 0 0 chr13 48587919 48587967 -53285202 + HERV17 LTR ERV1 434 481 -8145 5236 79 24 10 chr13 48587967 48588679 -53284490 + HERVK14 LTR ERVK 5038 5759 -186 347 193 5 13 chr13 48588679 48588756 -53284413 + MER41C LTR ERV1 1 61 -493 624 43 70 139 chr13 48588756 48588871 -53284298 + HERVK14 LTR ERVK 5837 5943 -2 1930 102 126 27 chr13 48588877 48589270 -53283899 + LTR14B LTR ERVK 1 608 0 1188 247 119 48 chr13 48589633 48590111 -53283058 + LTR40a LTR ERVL 4 515 -4 1686 194 58 14 chr13 48590123 48590552 -53282617 + L1 LINE L1 4949 5396 -750 1923 120 0 27 chr13 48590553 48590845 -53282324 + AluSg SINE Alu 1 284 -26 194 188 62 0 chr13 48591237 48591285 -53281884 + MIR3 SINE MIR 156 206 -2 21 0 0 0 chr13 48591858 48591879 -53281290 + AT_rich Low_complexity Low_complexity 1 21 0 203 135 0 58 chr13 48592006 48592058 -53281111 + MER5C DNA MER1_type 215 263 -61 28 0 0 0 chr13 48593712 48593740 -53279429 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 48593821 48593853 -53279316 + AT_rich Low_complexity Low_complexity 1 32 0 301 310 110 14 chr13 48595046 48595191 -53277978 - MIR SINE MIR -38 224 66 207 0 0 0 chr13 48595872 48595895 -53277274 + (CA)n Simple_repeat Simple_repeat 2 24 0 302 283 35 0 chr13 48596779 48596952 -53276217 + (TA)n Simple_repeat Simple_repeat 1 179 0 417 265 123 41 chr13 48597078 48597248 -53275921 - MIR SINE MIR -49 213 30 288 0 0 0 chr13 48598442 48598474 -53274695 + (TA)n Simple_repeat Simple_repeat 1 32 0 24 24 0 24 chr13 48598474 48598493 -53274676 + AT_rich Low_complexity Low_complexity 1 19 -22 2517 32 10 10 chr13 48598493 48598804 -53274365 - AluY SINE Alu 0 311 1 24 24 0 24 chr13 48598804 48598826 -53274343 + AT_rich Low_complexity Low_complexity 19 41 0 23 54 0 0 chr13 48599111 48599148 -53274021 + AT_rich Low_complexity Low_complexity 1 37 0 741 262 258 11 chr13 48599467 48600149 -53273020 + L1MD3 LINE L1 6700 7715 -280 216 0 0 0 chr13 48600170 48600194 -53272975 + (A)n Simple_repeat Simple_repeat 1 24 0 1238 274 43 27 chr13 48600194 48600639 -53272530 - MLT1D LTR MaLR -33 472 21 403 216 78 52 chr13 48600691 48600774 -53272395 + L1MD3 LINE L1 7746 7834 -161 2416 102 21 37 chr13 48600774 48601155 -53272014 + THE1C LTR MaLR 1 375 0 403 216 78 52 chr13 48601155 48601187 -53271982 + L1MD3 LINE L1 7834 7864 -131 327 214 220 71 chr13 48601223 48601391 -53271778 + L1MB8 LINE L1 5955 6147 -31 26 30 0 0 chr13 48601914 48601947 -53271222 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr13 48602105 48602143 -53271026 + AT_rich Low_complexity Low_complexity 1 38 0 199 366 20 5 chr13 48602480 48602582 -53270587 + MIR SINE MIR 38 141 -67 22 35 0 0 chr13 48603441 48603470 -53269699 + AT_rich Low_complexity Low_complexity 1 29 0 21 82 0 0 chr13 48603488 48603537 -53269632 + AT_rich Low_complexity Low_complexity 1 49 0 1021 324 60 10 chr13 48603869 48604350 -53268819 - LTR40a LTR ERVL 0 519 15 834 266 15 0 chr13 48604356 48604559 -53268610 - HERVL40 LTR ERVL -9 5521 5316 2238 106 0 0 chr13 48605486 48605778 -53267391 - AluSg SINE Alu -18 292 1 1622 307 34 24 chr13 48605829 48606535 -53266634 - HERVL40 LTR ERVL -764 4662 2194 4609 66 3 3 chr13 48606579 48607170 -53265999 - LTR10C LTR ERV1 0 591 1 398 202 46 29 chr13 48607225 48607398 -53265771 + (TA)n Simple_repeat Simple_repeat 2 177 0 3161 290 80 12 chr13 48608125 48608917 -53264252 + L1MB8 LINE L1 45 939 -5920 243 0 0 0 chr13 48608917 48608944 -53264225 + (CA)n Simple_repeat Simple_repeat 1 27 0 3161 290 80 12 chr13 48608944 48609285 -53263884 + L1MB8 LINE L1 939 1255 -5604 557 140 0 0 chr13 48609285 48609378 -53263791 + AluSg/x SINE Alu 213 305 -5 1757 269 38 50 chr13 48609378 48610551 -53262618 + L1MB8 LINE L1 1245 2415 -4544 1947 271 67 23 chr13 48610776 48611720 -53261449 + L1MB8 LINE L1 3011 3995 -2962 * 3819 251 70 33 chr13 48611716 48613313 -53259856 + L1MB8 LINE L1 4550 6206 -751 1344 179 42 4 chr13 48613313 48613553 -53259616 + AluJb SINE Alu 1 249 -63 189 74 0 0 chr13 48613567 48613594 -53259575 + (TC)n Simple_repeat Simple_repeat 2 28 0 285 29 0 0 chr13 48613594 48613628 -53259541 + (CA)n Simple_repeat Simple_repeat 1 34 0 2750 194 26 93 chr13 48613628 48614319 -53258850 + L1MB8 LINE L1 6202 6829 -160 1998 147 3 0 chr13 48614319 48614618 -53258551 - AluSx SINE Alu -12 300 1 2750 194 26 93 chr13 48614618 48614765 -53258404 + L1MB8 LINE L1 6829 6984 -5 333 0 0 0 chr13 48614930 48614967 -53258202 + (TG)n Simple_repeat Simple_repeat 2 38 0 1523 282 25 41 chr13 48614974 48615463 -53257706 - HERVL40 LTR ERVL -2499 3031 2551 501 300 101 82 chr13 48615739 48616106 -53257063 - HERVL40 LTR ERVL -4199 1331 958 2726 158 2 8 chr13 48616165 48616634 -53256535 - L1PA15 LINE L1 -1 6164 5699 797 180 0 67 chr13 48616637 48616831 -53256338 + L1P LINE L1 5105 5285 -861 539 351 20 20 chr13 48616839 48617138 -53256031 - HERVL40 LTR ERVL -4652 878 580 1253 243 36 96 chr13 48617761 48618312 -53254857 - LTR40a LTR ERVL -1 518 1 3949 172 22 13 chr13 48618806 48619521 -53253648 + MER72 LTR ERV1 1 722 0 22 56 0 0 chr13 48620035 48620071 -53253098 + AT_rich Low_complexity Low_complexity 1 36 0 2197 93 3 0 chr13 48620082 48620372 -53252797 + AluSp SINE Alu 21 311 -2 443 330 168 7 chr13 48620534 48620837 -53252332 + L2 LINE L2 1048 1399 -1915 824 266 93 48 chr13 48621626 48621674 -53251495 - MLT1C LTR MaLR 0 467 423 1117 165 22 40 chr13 48621674 48621894 -53251275 + L1MA5A LINE L1 6028 6244 -53 2302 94 0 0 chr13 48621894 48622191 -53250978 + AluY SINE Alu 1 297 -14 1117 165 22 40 chr13 48622191 48622242 -53250927 + L1MA5A LINE L1 6244 6294 -3 824 266 93 48 chr13 48622242 48622633 -53250536 - MLT1C LTR MaLR -44 423 8 2531 68 0 0 chr13 48622733 48623044 -53250125 + AluY SINE Alu 1 311 0 344 274 53 0 chr13 48623496 48623609 -53249560 - L1MC3 LINE L1 -1085 6700 6582 1041 249 71 43 chr13 48623724 48624161 -53249008 - L1MD3 LINE L1 -1391 6604 6156 364 264 182 0 chr13 48624673 48624832 -53248337 - MER3 DNA MER1_type -21 188 1 203 200 0 22 chr13 48624858 48624903 -53248266 + (CATATA)n Simple_repeat Simple_repeat 1 44 0 723 284 47 34 chr13 48625209 48625530 -53247639 + LTR40b LTR ERVL 135 459 -3 1407 254 88 59 chr13 48625535 48626095 -53247074 + MLT1E2 LTR MaLR 78 626 0 2018 254 81 22 chr13 48626546 48627216 -53245953 + L1ME3A LINE L1 5450 6158 -12 205 71 0 48 chr13 48627318 48627360 -53245809 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr13 48627415 48627438 -53245731 + AT_rich Low_complexity Low_complexity 1 23 0 2331 94 0 0 chr13 48627950 48628258 -53244911 - AluY SINE Alu -3 308 1 397 270 50 6 chr13 48629159 48629318 -53243851 - L1MD3 LINE L1 -1885 5923 5758 5992 204 166 41 chr13 48629477 48631037 -53242132 - MER52A LTR ERV1 0 1755 1 1935 127 0 34 chr13 48631050 48631342 -53241827 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr13 48631345 48631377 -53241792 + (TAA)n Simple_repeat Simple_repeat 2 33 0 256 303 55 67 chr13 48631534 48631699 -53241470 + MER63A DNA MER1_type 46 208 -2 299 335 18 48 chr13 48631702 48631869 -53241300 + MIR SINE MIR 36 197 -65 182 367 46 41 chr13 48632078 48632274 -53240895 + L2 LINE L2 2048 2244 -1070 1404 189 54 27 chr13 48632662 48632959 -53240210 - AluJo SINE Alu -7 305 1 199 398 78 47 chr13 48632983 48633111 -53240058 + L2 LINE L2 3123 3254 -18 221 369 0 0 chr13 48633146 48633230 -53239939 + L3 LINE CR1 1487 1570 -7 210 368 174 5 chr13 48633882 48634083 -53239086 - L3 LINE CR1 -1029 548 314 1464 146 76 7 chr13 48634683 48634971 -53238198 - MER34B LTR ERV1 -29 536 229 5024 246 60 37 chr13 48634978 48636147 -53237022 - MLT1A1-int LTR MaLR -296 1439 230 2204 90 3 0 chr13 48636147 48636435 -53236734 + AluSp SINE Alu 9 297 -16 5024 246 60 37 chr13 48636435 48636671 -53236498 - MLT1A1-int LTR MaLR -1505 230 1 1186 197 75 69 chr13 48636671 48637032 -53236137 - MLT1A1 LTR MaLR 0 365 3 601 378 45 31 chr13 48637245 48637956 -53235213 - ERVL LTR ERVL -1723 4041 3321 303 324 39 28 chr13 48638112 48638291 -53234878 + L2 LINE L2 3113 3293 -20 253 361 8 42 chr13 48638631 48638750 -53234419 - L2 LINE L2 -22 3291 3177 476 249 30 78 chr13 48639390 48639659 -53233510 + L1MC4 LINE L1 6448 6703 -1339 212 200 18 0 chr13 48639662 48639717 -53233452 + (TA)n Simple_repeat Simple_repeat 1 56 0 434 214 30 7 chr13 48639791 48639889 -53233280 + L1MC4a LINE L1 6705 6767 -1041 258 56 0 0 chr13 48639889 48639925 -53233244 + (TG)n Simple_repeat Simple_repeat 2 37 0 434 214 30 7 chr13 48639925 48639958 -53233211 + L1MC4a LINE L1 6767 6798 -1010 387 167 0 0 chr13 48640068 48640158 -53233011 + A-rich Low_complexity Low_complexity 1 90 0 191 139 256 0 chr13 48642362 48642405 -53230764 + MER5B DNA MER1_type 16 69 -109 1860 274 54 34 chr13 48643066 48643682 -53229487 + MER92B LTR ERV1 1 628 -8 307 140 20 0 chr13 48643690 48643740 -53229429 - L2 LINE L2 0 3313 3263 352 376 36 6 chr13 48643801 48643966 -53229203 - L2 LINE L2 -241 3072 2903 542 104 0 0 chr13 48644172 48644249 -53228920 + L1PB4 LINE L1 5574 5650 -506 2244 122 19 32 chr13 48644249 48644618 -53228551 - THE1B LTR MaLR 0 364 1 298 130 0 0 chr13 48644623 48644669 -53228500 - THE1B-int LTR MaLR -6 1574 1529 10989 116 6 1 chr13 48644689 48646256 -53226913 - THE1B-int LTR MaLR -6 1574 1 2135 133 19 32 chr13 48646256 48646625 -53226544 - THE1B LTR MaLR 0 364 1 2504 174 26 18 chr13 48646625 48647132 -53226037 + L1PB4 LINE L1 5646 6156 0 29 32 0 48 chr13 48647609 48647671 -53225498 + AT_rich Low_complexity Low_complexity 1 59 0 255 133 0 0 chr13 48648791 48648836 -53224333 + (CA)n Simple_repeat Simple_repeat 2 46 0 278 313 25 0 chr13 48651123 48651203 -53221966 + MER45 DNA AcHobo 1 82 -958 1005 340 71 16 chr13 48651205 48651784 -53221385 + L2 LINE L2 1259 1869 -1445 768 316 66 30 chr13 48651787 48652182 -53220987 + MLT2F LTR ERVL 1 409 -254 255 288 17 0 chr13 48653682 48653741 -53219428 + MER91A DNA MER1_type 19 78 -118 245 289 117 45 chr13 48654540 48654983 -53218186 + L1MEd LINE L1 593 1067 -5052 243 294 15 0 chr13 48655380 48655448 -53217721 + GA-rich Low_complexity Low_complexity 2 70 0 313 342 0 33 chr13 48655490 48655674 -53217495 + GA-rich Low_complexity Low_complexity 1 178 0 233 241 0 0 chr13 48655655 48655709 -53217460 + A-rich Low_complexity Low_complexity 1 54 0 * 441 252 15 10 chr13 48655822 48656066 -53217103 + L1MC4 LINE L1 6809 7289 -753 * 474 292 7 0 chr13 48656064 48656208 -53216961 + L1MC4 LINE L1 7761 7905 -137 1568 240 53 3 chr13 48657984 48658359 -53214810 - MSTD LTR MaLR -2 394 1 5382 246 71 35 chr13 48658359 48660032 -53213137 - MSTD-int LTR MaLR 0 1735 2 1644 216 39 18 chr13 48660034 48660422 -53212747 - MSTD LTR MaLR 0 396 1 216 326 82 41 chr13 48660895 48661042 -53212127 + L2 LINE L2 2897 3049 -223 1821 213 57 11 chr13 48661317 48662537 -53210632 - L1MC2 LINE L1 -13 6331 4946 277 214 0 0 chr13 48662753 48662809 -53210360 + L2 LINE L2 3215 3270 -2 2078 113 21 0 chr13 48663785 48664076 -53209093 + AluSp SINE Alu 1 297 -16 480 277 27 62 chr13 48664386 48664610 -53208559 - LTR68 LTR ERV1 0 740 525 1143 294 65 13 chr13 48665197 48665646 -53207523 + MER76 LTR ERV 213 684 -4 4085 116 24 27 chr13 48665674 48666340 -53206829 - MER4A LTR ERV1 0 664 1 2941 184 27 55 chr13 48666511 48667222 -53205947 + LTR8 LTR ERV1 1 691 0 209 338 38 30 chr13 48668113 48668246 -53204923 + L2 LINE L2 2236 2369 -945 292 347 75 61 chr13 48669503 48669849 -53203320 - L2 LINE L2 -15 3257 2907 777 254 108 49 chr13 48669868 48670203 -53202966 - MLT1A1 LTR MaLR -10 457 1 1485 122 13 4 chr13 48670336 48670566 -53202603 + AluSq SINE Alu 71 302 -11 26 98 0 0 chr13 48671272 48671354 -53201815 + AT_rich Low_complexity Low_complexity 1 82 0 180 0 0 0 chr13 48671536 48671556 -53201613 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 189 154 0 0 chr13 48671747 48671786 -53201383 + (CA)n Simple_repeat Simple_repeat 2 40 0 676 303 29 5 chr13 48672529 48672737 -53200432 - MER58A DNA MER1_type 0 224 12 346 340 62 38 chr13 48673568 48673777 -53199392 + MLT1L LTR MaLR 347 560 -55 1246 271 41 26 chr13 48674125 48674432 -53198737 + L1ME1 LINE L1 5372 5690 -476 2291 79 6 28 chr13 48674432 48674749 -53198420 + AluSg SINE Alu 1 310 0 1246 271 41 26 chr13 48674749 48674931 -53198238 + L1ME1 LINE L1 5690 5868 -298 227 196 59 0 chr13 48674933 48674984 -53198185 + LTR40a LTR ERVL 466 519 0 2039 215 18 9 chr13 48674991 48675447 -53197722 - MER65C LTR ERV1 -1 460 1 297 0 0 0 chr13 48675732 48675765 -53197404 + (TA)n Simple_repeat Simple_repeat 2 34 0 3879 20 0 0 chr13 48675769 48676217 -53196952 - L1PA3 LINE L1 -10 6145 5698 4694 231 108 38 chr13 48676867 48678895 -53194274 - Charlie5 DNA MER1_type 0 2624 454 287 300 12 0 chr13 48678895 48678975 -53194194 + MLT1D LTR MaLR 1 81 -424 1886 239 48 60 chr13 48678980 48679583 -53193586 - MER77 LTR ERV1 -7 598 3 1508 240 56 13 chr13 48679608 48680004 -53193165 + MLT1D LTR MaLR 93 505 0 541 220 32 70 chr13 48680007 48680027 -53193142 - Charlie5 DNA MER1_type -2169 455 436 2267 100 0 0 chr13 48680027 48680328 -53192841 - AluSg SINE Alu -9 301 1 541 220 32 70 chr13 48680328 48680493 -53192676 - Charlie5 DNA MER1_type -2188 436 277 374 256 0 11 chr13 48680498 48680588 -53192581 - Charlie5 DNA MER1_type -2523 89 1 671 204 235 19 chr13 48680663 48680987 -53192182 + LTR37A LTR ERV1 32 425 -1 2291 191 11 36 chr13 48681310 48681764 -53191405 - MLT1C LTR MaLR 0 467 24 2610 130 34 0 chr13 48681764 48682178 -53190991 - MSTA LTR MaLR 0 428 1 2291 191 11 36 chr13 48682178 48682200 -53190969 - MLT1C LTR MaLR -443 24 3 227 315 66 33 chr13 48682453 48682634 -53190535 - L1ME LINE L1 -345 5776 5590 432 296 24 41 chr13 48682644 48682813 -53190356 - MIR SINE MIR -11 251 86 3640 144 31 0 chr13 48682926 48683510 -53189659 - LTR43 LTR ERV1 0 602 1 2065 133 20 0 chr13 48686876 48687178 -53185991 - AluSx SINE Alu -4 308 1 21 36 0 0 chr13 48687196 48687224 -53185945 + AT_rich Low_complexity Low_complexity 1 28 0 249 301 194 0 chr13 48687503 48687606 -53185563 - MIR SINE MIR -126 136 14 242 181 0 42 chr13 48687913 48687985 -53185184 - L1M4 LINE L1 -3218 2928 2860 421 290 9 0 chr13 48688375 48688482 -53184687 + L1PA13 LINE L1 1423 1530 -5257 286 220 11 22 chr13 48688574 48688665 -53184504 + T-rich Low_complexity Low_complexity 1 90 0 476 284 68 31 chr13 48688824 48689268 -53183901 - L1MEc LINE L1 -3152 3388 2929 518 330 95 18 chr13 48689402 48689738 -53183431 - LTR16A LTR ERVL -88 362 1 1986 141 116 15 chr13 48689972 48690361 -53182808 + MSTA LTR MaLR 1 428 0 277 298 39 44 chr13 48690375 48690556 -53182613 - L1MEc LINE L1 -4769 1952 1773 245 100 20 0 chr13 48690789 48690839 -53182330 + (TA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr13 48691277 48691307 -53181862 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 48692439 48692470 -53180699 + AT_rich Low_complexity Low_complexity 1 31 0 676 69 77 0 chr13 48692839 48693113 -53180056 + (TA)n Simple_repeat Simple_repeat 1 295 0 297 0 0 0 chr13 48693113 48693146 -53180023 + (GA)n Simple_repeat Simple_repeat 2 34 0 1307 202 22 15 chr13 48693146 48693418 -53179751 - AluJb SINE Alu -34 278 5 202 274 0 0 chr13 48694644 48694695 -53178474 + (TG)n Simple_repeat Simple_repeat 2 52 0 1955 104 4 7 chr13 48696500 48696778 -53176391 + AluSq SINE Alu 1 277 -36 476 267 118 20 chr13 48696922 48697177 -53175992 - L1MEc LINE L1 -4932 1608 1329 222 200 0 0 chr13 48697223 48697263 -53175906 + (CA)n Simple_repeat Simple_repeat 2 41 0 223 292 28 14 chr13 48697284 48697356 -53175813 + L2 LINE L2 683 755 -2559 2249 113 3 0 chr13 48698075 48698384 -53174785 + AluSx SINE Alu 1 310 -2 217 151 38 19 chr13 48698458 48698511 -53174658 + (TA)n Simple_repeat Simple_repeat 2 55 0 227 193 0 18 chr13 48698513 48698570 -53174599 + LTR66 LTR ERVL 394 449 -161 283 327 60 33 chr13 48698584 48698734 -53174435 + MIR SINE MIR 1 154 -108 1728 185 7 0 chr13 48698946 48699227 -53173942 + AluSx SINE Alu 3 285 -27 276 321 75 37 chr13 48700017 48700204 -53172965 + L2 LINE L2 2180 2373 -941 330 363 58 68 chr13 48700239 48700449 -53172720 + L2 LINE L2 2699 2907 -407 1903 151 7 0 chr13 48700449 48700741 -53172428 - AluSx SINE Alu -16 296 3 330 363 58 68 chr13 48700741 48700808 -53172361 + L2 LINE L2 2907 2973 -341 267 352 19 9 chr13 48701000 48701108 -53172061 + L2 LINE L2 3191 3299 -14 24 32 0 0 chr13 48701186 48701217 -53171952 + AT_rich Low_complexity Low_complexity 1 31 0 2213 111 0 3 chr13 48701378 48701685 -53171484 - AluSc SINE Alu -1 308 3 2084 117 0 19 chr13 48702701 48703010 -53170159 - AluSx SINE Alu -9 303 1 31 44 0 0 chr13 48704503 48704548 -53168621 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr13 48704694 48704716 -53168453 + AT_rich Low_complexity Low_complexity 1 22 0 185 344 54 0 chr13 48705726 48705819 -53167350 + MIR SINE MIR 164 261 -1 204 336 107 34 chr13 48706172 48706321 -53166848 + L3 LINE CR1 951 1110 -467 304 278 41 41 chr13 48706795 48706892 -53166277 + L3 LINE CR1 1203 1299 -278 189 360 127 7 chr13 48707051 48707201 -53165968 + MIR SINE MIR 81 248 -14 307 356 35 0 chr13 48707236 48707351 -53165818 - L2 LINE L2 0 3272 3154 266 0 29 0 chr13 48707916 48707950 -53165219 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1641 163 41 76 chr13 48707950 48708092 -53165077 - L1PA15 LINE L1 -6 6159 6014 2038 129 0 6 chr13 48708092 48708403 -53164766 - AluSx SINE Alu -1 311 3 1641 163 41 76 chr13 48708403 48708603 -53164566 - L1PA15 LINE L1 -151 6014 5829 308 282 0 0 chr13 48708798 48708876 -53164293 + HAL1b LINE L1 597 674 -674 365 312 79 60 chr13 48708980 48709400 -53163769 + MLT1J LTR MaLR 78 505 -6 23 33 0 0 chr13 48709670 48709700 -53163469 + AT_rich Low_complexity Low_complexity 1 30 0 390 61 0 0 chr13 48710009 48710086 -53163083 + Alu SINE Alu 232 308 0 2462 61 0 6 chr13 48710334 48710645 -53162524 + AluY SINE Alu 1 309 -2 2268 97 3 10 chr13 48710863 48711173 -53161996 - AluSc SINE Alu 0 309 2 245 278 0 0 chr13 48711292 48711346 -53161823 - L2 LINE L2 -241 3072 3019 1139 369 83 21 chr13 48711393 48712366 -53160803 - L2 LINE L2 -384 2930 1897 418 396 31 6 chr13 48712501 48712824 -53160345 - L2 LINE L2 -2230 1084 754 2655 225 9 45 chr13 48712979 48713738 -53159431 - L1PA15 LINE L1 -3341 3508 2765 11434 205 1 1 chr13 48713739 48717064 -53156105 + L1PA15 LINE L1 3517 6861 -7 326 415 39 39 chr13 48717506 48717867 -53155302 - L2 LINE L2 -2878 436 76 26 30 0 0 chr13 48718818 48718851 -53154318 + AT_rich Low_complexity Low_complexity 1 33 0 240 111 0 0 chr13 48719652 48719688 -53153481 + (CAA)n Simple_repeat Simple_repeat 1 36 0 423 42 28 14 chr13 48719815 48719886 -53153283 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 498 332 250 11 chr13 48719985 48720349 -53152820 + L2 LINE L2 2863 3313 0 253 190 0 63 chr13 48720383 48720462 -53152707 + T-rich Low_complexity Low_complexity 5 78 0 1220 274 147 27 chr13 48720462 48721282 -53151887 - L1ME1 LINE L1 0 6166 5258 239 106 71 12 chr13 48721315 48721400 -53151769 + (TA)n Simple_repeat Simple_repeat 2 91 0 293 181 173 23 chr13 48721400 48721533 -53151636 - L1ME1 LINE L1 -904 5242 5090 1958 154 3 3 chr13 48721578 48721877 -53151292 + AluSx SINE Alu 1 299 -13 2520 266 75 12 chr13 48721878 48722849 -53150320 + L1M4 LINE L1 4021 5052 -1094 351 250 42 0 chr13 48723592 48723712 -53149457 - MER103 DNA DNA -39 127 3 485 299 32 0 chr13 48723746 48723933 -53149236 + L1M4 LINE L1 4729 4921 -1225 186 43 0 0 chr13 48724202 48724225 -53148944 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr13 48725574 48725598 -53147571 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr13 48725982 48726022 -53147147 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr13 48726155 48726191 -53146978 + AT_rich Low_complexity Low_complexity 1 36 0 36 53 0 0 chr13 48726243 48726300 -53146869 + AT_rich Low_complexity Low_complexity 1 57 0 312 102 0 0 chr13 48728375 48728424 -53144745 + (CA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr13 48728488 48728509 -53144660 + AT_rich Low_complexity Low_complexity 1 21 0 2148 117 0 0 chr13 48728860 48729160 -53144009 - AluSg1 SINE Alu -9 300 1 367 315 0 9 chr13 48729516 48729627 -53143542 + LTR33 LTR ERVL 6 115 -406 809 305 47 6 chr13 48729634 48729955 -53143214 - ERVL LTR ERVL -3186 2578 2245 21 36 0 0 chr13 48730085 48730113 -53143056 + AT_rich Low_complexity Low_complexity 1 28 0 1975 165 16 16 chr13 48730307 48730682 -53142487 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr13 48731100 48731121 -53142048 + AT_rich Low_complexity Low_complexity 1 21 0 8379 117 14 12 chr13 48731261 48733219 -53139950 - L1PA8A LINE L1 0 6131 4172 1931 125 44 0 chr13 48733219 48733516 -53139653 - AluSx SINE Alu -2 310 1 8379 117 14 12 chr13 48733516 48733641 -53139528 - L1PA8A LINE L1 -1959 4172 4049 26 50 0 0 chr13 48734408 48734448 -53138721 + AT_rich Low_complexity Low_complexity 1 40 0 9266 216 77 21 chr13 48734465 48737634 -53135535 + L1MCa LINE L1 6 3363 -3063 2379 68 3 7 chr13 48737634 48737972 -53135197 + AluY SINE Alu 1 311 0 9266 216 77 21 chr13 48737972 48738052 -53135117 + L1MCa LINE L1 3363 3437 -2989 13960 183 34 16 chr13 48738153 48744862 -53128307 + L1PB1 LINE L1 6 6862 -5 940 286 32 5 chr13 48744889 48745298 -53127871 + L1MCa LINE L1 3563 3982 -2444 * 4055 246 34 16 chr13 48745283 48746740 -53126429 + L1MCa LINE L1 4279 5761 -745 218 312 13 0 chr13 48748370 48748447 -53124722 + (CATA)n Simple_repeat Simple_repeat 2 79 0 213 94 0 0 chr13 48748454 48748486 -53124683 + (TG)n Simple_repeat Simple_repeat 1 32 0 3220 142 19 68 chr13 48748524 48749160 -53124009 - MER6A DNA MER2_type 0 605 1 673 249 57 5 chr13 48749213 48749406 -53123763 - MER82 DNA MER2_type -7 646 444 186 349 71 66 chr13 48750178 48750390 -53122779 - L2 LINE L2 -2105 1209 997 1170 138 138 122 chr13 48751337 48751706 -53121463 + MSTA LTR MaLR 1 428 0 428 320 67 0 chr13 48751925 48752103 -53121066 + MIR SINE MIR 73 262 0 243 206 52 41 chr13 48752751 48752848 -53120321 + L1MCa LINE L1 303 400 -6244 5443 194 42 22 chr13 48753400 48754542 -53118627 - L1M4b LINE L1 -5346 1513 349 584 105 0 90 chr13 48754650 48754783 -53118386 + L1MA2 LINE L1 6021 6141 -163 1317 70 0 0 chr13 48754851 48755022 -53118147 + L1MA1 LINE L1 6132 6302 0 1627 236 71 11 chr13 48755023 48755621 -53117548 + L1MCa LINE L1 1189 1821 -4825 3231 231 63 16 chr13 48757344 48758465 -53114704 - L1 LINE L1 -3050 4515 3345 943 194 29 0 chr13 48758470 48758640 -53114529 + MER7A DNA MER2_type 4 176 -170 635 250 154 0 chr13 48759510 48759730 -53113439 - L1MC4 LINE L1 -180 7862 7609 448 101 63 0 chr13 48760119 48760198 -53112971 - AluY SINE Alu -14 297 214 414 97 0 0 chr13 48760335 48760397 -53112772 + Alu SINE Alu 238 299 -11 2233 79 7 0 chr13 48760691 48760982 -53112187 + AluY SINE Alu 1 293 -18 1713 142 44 34 chr13 48760982 48761278 -53111891 - THE1B LTR MaLR -65 299 1 2103 159 32 0 chr13 48761278 48761650 -53111519 - THE1B-int LTR MaLR 0 1580 1197 348 346 187 27 chr13 48761863 48762340 -53110829 - L3 LINE CR1 -156 1421 1022 2058 102 7 14 chr13 48762340 48762650 -53110519 - AluSg SINE Alu 0 308 1 348 346 187 27 chr13 48762650 48762870 -53110299 - L3 LINE CR1 -555 1022 611 4606 176 64 12 chr13 48763244 48764787 -53108382 - L1MCa LINE L1 -4063 2363 651 455 275 47 0 chr13 48766532 48766681 -53106488 + L1MCb LINE L1 411 566 -5479 1699 256 70 15 chr13 48766779 48767365 -53105804 + L1MCb LINE L1 570 1187 -4858 1023 162 76 69 chr13 48767383 48767686 -53105483 + L1M3 LINE L1 5262 5566 -614 645 234 145 37 chr13 48767847 48768227 -53104942 - L1 LINE L1 -4228 3337 2917 * 1068 213 31 8 chr13 48768222 48768476 -53104693 + L1 LINE L1 4123 4382 -1764 2325 92 0 22 chr13 48768477 48768793 -53104376 + AluY SINE Alu 1 309 -2 2114 125 3 0 chr13 48769318 48769615 -53103554 - AluSg SINE Alu -12 298 1 216 0 0 0 chr13 48770256 48770280 -53102889 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1739 162 67 9 chr13 48770416 48770731 -53102438 + THE1C LTR MaLR 43 375 0 874 108 6 66 chr13 48770731 48770854 -53102315 + THE1C-int LTR MaLR 1 113 -1467 2223 110 3 0 chr13 48770854 48771154 -53102015 + AluSq SINE Alu 1 301 -12 874 108 6 66 chr13 48771154 48771196 -53101973 + THE1C-int LTR MaLR 113 156 -1424 * 1025 73 47 0 chr13 48771193 48771343 -53101826 + THE1C-int LTR MaLR 97 253 -1327 2196 114 0 3 chr13 48771544 48771843 -53101326 - AluSx SINE Alu -14 298 1 1926 74 71 7 chr13 48771849 48772148 -53101021 - AluY SINE Alu 0 316 1 268 229 85 26 chr13 48772174 48772327 -53100842 + L1ME3A LINE L1 5108 5269 -877 646 245 104 79 chr13 48772330 48772847 -53100322 + L1ME3A LINE L1 5310 5841 -329 960 153 118 1 chr13 48772851 48773037 -53100132 + L1MB4 LINE L1 5422 5628 -619 1448 172 35 72 chr13 48773168 48773303 -53099866 - MLT1B LTR MaLR -23 367 228 1705 99 95 14 chr13 48773303 48773586 -53099583 - AluY SINE Alu -3 308 3 1448 172 35 72 chr13 48773586 48773823 -53099346 - MLT1B LTR MaLR -162 228 9 1678 162 36 12 chr13 48773823 48774157 -53099012 + L1MB4 LINE L1 5839 6180 0 225 136 23 0 chr13 48774159 48774203 -53098966 + L1MCa LINE L1 1039 1083 -5343 1218 227 162 16 chr13 48774209 48774698 -53098471 + L1MCa LINE L1 1893 2452 -3974 704 261 42 53 chr13 48774697 48775043 -53098126 + L1MCa LINE L1 1148 1489 -5118 * 2155 125 0 3 chr13 48775043 48775346 -53097823 + AluSx SINE Alu 1 302 -10 704 261 42 53 chr13 48775346 48775451 -53097718 + L1MCa LINE L1 1489 1594 -5013 23 0 0 0 chr13 48776290 48776313 -53096856 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 48776697 48776719 -53096450 + GC_rich Low_complexity Low_complexity 1 22 0 1436 147 36 62 chr13 48777334 48777760 -53095409 - LTR12 LTR ERV1 -234 480 1 276 307 123 72 chr13 48777769 48778241 -53094928 - L1MEd LINE L1 -5560 559 64 300 141 65 43 chr13 48778887 48778979 -53094190 + L1MC2 LINE L1 6250 6343 -1 1124 266 53 6 chr13 48778984 48779454 -53093715 + L1MCa LINE L1 2442 2933 -3493 458 268 32 21 chr13 48779458 48779634 -53093535 + L1MEc LINE L1 1491 1671 -4713 2496 72 0 0 chr13 48779634 48779941 -53093228 + AluY SINE Alu 1 307 -4 458 268 32 21 chr13 48779941 48779954 -53093215 + L1MEc LINE L1 1671 1682 -4702 2554 79 14 6 chr13 48779969 48780422 -53092747 - L1P3 LINE L1 -693 5461 5009 1698 180 3 7 chr13 48780572 48780878 -53092291 - AluJb SINE Alu -7 305 1 408 318 56 13 chr13 48781568 48781801 -53091368 - HAL1 LINE L1 -774 1733 1491 231 305 96 5 chr13 48781820 48782007 -53091162 + HAL1 LINE L1 1490 1693 -814 2346 110 0 0 chr13 48783846 48784155 -53089014 - AluY SINE Alu -2 309 1 26 82 0 0 chr13 48784451 48784512 -53088657 + AT_rich Low_complexity Low_complexity 1 61 0 883 82 0 0 chr13 48786039 48786149 -53087020 - AluSq/x SINE Alu -202 110 1 197 336 129 17 chr13 48786221 48786453 -53086716 - L2 LINE L2 -128 3185 2928 903 191 11 21 chr13 48786500 48786688 -53086481 + Tigger6 DNA MER2_type 5 190 -1407 734 227 34 55 chr13 48786828 48787086 -53086083 - L1MD3 LINE L1 0 8042 7803 2283 91 0 0 chr13 48787465 48787762 -53085407 + AluSc SINE Alu 1 297 -12 312 259 35 65 chr13 48787873 48788043 -53085126 - L1M4 LINE L1 -3038 3108 2944 1336 138 42 14 chr13 48788679 48788962 -53084207 + AluSx SINE Alu 1 291 -21 2209 188 14 31 chr13 48789384 48789869 -53083300 - MER31A LTR ERV1 -8 477 1 2179 167 11 49 chr13 48790592 48791064 -53082105 + MER101B LTR ERV1 117 570 0 279 200 38 12 chr13 48792333 48792413 -53080756 + (TA)n Simple_repeat Simple_repeat 1 82 0 23 0 0 0 chr13 48792527 48792550 -53080619 + AT_rich Low_complexity Low_complexity 1 23 0 195 191 0 24 chr13 48793734 48793776 -53079393 - MIR SINE MIR -56 206 166 286 308 75 25 chr13 48793850 48793970 -53079199 - MIR SINE MIR -117 145 20 966 247 66 47 chr13 48794153 48794613 -53078556 + MLT2B1 LTR ERVL 1 516 -4 23 54 0 0 chr13 48795164 48795201 -53077968 + AT_rich Low_complexity Low_complexity 1 37 0 33 66 0 0 chr13 48795251 48795312 -53077857 + AT_rich Low_complexity Low_complexity 1 61 0 21 57 0 0 chr13 48795884 48795919 -53077250 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 48796082 48796111 -53077058 + AT_rich Low_complexity Low_complexity 1 29 0 839 301 181 13 chr13 48796605 48797225 -53075944 - L2 LINE L2 0 3313 2581 205 125 161 0 chr13 48797881 48797937 -53075232 + L2 LINE L2 3247 3311 -2 22 0 0 0 chr13 48798336 48798358 -53074811 + AT_rich Low_complexity Low_complexity 1 22 0 358 192 13 0 chr13 48798518 48798596 -53074573 - MER53 DNA DNA 0 189 111 32 57 0 0 chr13 48798838 48798891 -53074278 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chr13 48799290 48799318 -53073851 + AT_rich Low_complexity Low_complexity 1 28 0 2231 113 0 10 chr13 48801193 48801504 -53071665 - AluSx SINE Alu -4 308 1 5600 233 39 46 chr13 48801524 48803340 -53069829 - L1MC3 LINE L1 -727 7058 5256 820 256 22 22 chr13 48803349 48803576 -53069593 - MLT1C LTR MaLR 0 467 241 1038 181 99 9 chr13 48803577 48803809 -53069360 - L1M1 LINE L1 -5408 2157 1905 493 253 55 60 chr13 48803812 48803994 -53069175 - MLT1C LTR MaLR -215 252 72 2600 271 38 46 chr13 48804060 48805442 -53067727 - L1MC3 LINE L1 -890 5256 3885 21 0 0 0 chr13 48805444 48805465 -53067704 + AT_rich Low_complexity Low_complexity 1 21 0 2040 171 56 0 chr13 48805479 48805854 -53067315 - L1PA15 LINE L1 0 6165 5770 4476 123 11 4 chr13 48805854 48806553 -53066616 - L1PA10 LINE L1 -1455 4691 3988 5567 119 4 0 chr13 48806555 48807933 -53065236 + L1PA10 LINE L1 4679 6060 -108 21 0 0 0 chr13 48808121 48808142 -53065027 + AT_rich Low_complexity Low_complexity 1 21 0 14053 220 22 18 chr13 48808149 48812294 -53060875 - L1P4 LINE L1 -395 5770 1613 688 273 61 34 chr13 48812278 48812784 -53060385 - L1MC3 LINE L1 -2808 3338 2819 * 207 213 43 11 chr13 48812803 48812897 -53060272 + (TA)n Simple_repeat Simple_repeat 2 98 0 195 156 13 26 chr13 48812944 48813021 -53060148 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 26 30 0 0 chr13 48813044 48813077 -53060092 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 48813096 48813117 -53060052 + AT_rich Low_complexity Low_complexity 1 21 0 536 290 60 10 chr13 48813209 48813523 -53059646 - L1MC3 LINE L1 -3619 2527 2198 2063 169 28 39 chr13 48813556 48814024 -53059145 - L1MA4A LINE L1 -10 6293 5831 829 173 16 71 chr13 48814130 48814402 -53058767 - L1P4 LINE L1 -635 5539 5314 249 111 0 56 chr13 48814413 48814485 -53058684 + (TTA)n Simple_repeat Simple_repeat 1 68 0 6892 202 19 53 chr13 48814487 48816365 -53056804 - L1MA4A LINE L1 -836 5310 3497 347 349 5 26 chr13 48817082 48817274 -53055895 + MLT1I LTR MaLR 3 190 -219 274 238 12 36 chr13 48817367 48817451 -53055718 + MLT1I LTR MaLR 320 401 -8 225 369 29 19 chr13 48818429 48818635 -53054534 - Charlie8 DNA MER1_type -2180 237 30 569 228 95 26 chr13 48818816 48819005 -53054164 + MIR SINE MIR 57 258 -4 7933 183 39 38 chr13 48819520 48821499 -53051670 - L1 LINE L1 -3775 3073 1094 1255 130 0 0 chr13 48821499 48821676 -53051493 - THE1C LTR MaLR 0 375 199 1940 140 24 111 chr13 48821683 48822238 -53050931 - THE1C-int LTR MaLR -1029 551 1 2164 150 13 11 chr13 48822238 48822612 -53050557 - THE1C LTR MaLR 0 375 1 836 269 22 37 chr13 48822612 48822880 -53050289 - L1 LINE L1 -5751 1098 835 304 200 0 0 chr13 48823025 48823080 -53050089 - L1 LINE L1 -6792 57 3 635 205 179 15 chr13 48823102 48823365 -53049804 - L1MCb LINE L1 -3955 2609 2304 251 208 107 16 chr13 48823400 48823564 -53049605 - MER52C LTR ERV1 -2 1276 1198 1060 233 37 33 chr13 48823898 48824996 -53048173 - L1MCb LINE L1 -4434 2130 845 1871 172 3 0 chr13 48824996 48825293 -53047876 - AluSx SINE Alu -14 298 1 1912 159 0 0 chr13 48825441 48825743 -53047426 + AluY SINE Alu 1 302 -9 365 264 9 38 chr13 48827206 48827312 -53045857 - MLT1A1 LTR MaLR -103 262 160 24 0 0 0 chr13 48827353 48827377 -53045792 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 48827476 48827506 -53045663 + AT_rich Low_complexity Low_complexity 1 30 0 641 293 33 9 chr13 48829297 48829512 -53043657 + ERVL LTR ERVL 1737 1956 -3808 256 354 90 21 chr13 48829667 48829811 -53043358 + L2 LINE L2 3160 3313 0 428 280 131 34 chr13 48830042 48830217 -53042952 - L2 LINE L2 -1 3312 3121 248 212 0 0 chr13 48830237 48830303 -53042866 + L1MA3 LINE L1 6240 6305 0 500 386 23 7 chr13 48830338 48830619 -53042550 - L2 LINE L2 -300 3013 2730 697 269 90 0 chr13 48831215 48831427 -53041742 + L1MC3 LINE L1 6437 6667 -1118 387 275 16 18 chr13 48831472 48831601 -53041568 - MLT2B1 LTR ERVL -40 456 240 233 257 14 27 chr13 48831592 48831666 -53041503 - MLT2D LTR ERVL -341 73 1 * 2030 236 34 27 chr13 48831666 48832001 -53041168 + L1MC3 LINE L1 7177 7508 -277 1888 139 0 0 chr13 48832001 48832267 -53040902 + AluSg SINE Alu 1 266 -44 2030 236 34 27 chr13 48832267 48832279 -53040890 + L1MC3 LINE L1 7508 7518 -267 203 32 65 0 chr13 48832279 48832310 -53040859 + A-rich Low_complexity Low_complexity 2 34 0 2030 236 34 27 chr13 48832310 48832558 -53040611 + L1MC3 LINE L1 7518 7777 -8 6389 43 22 1 chr13 48832564 48833369 -53039800 + L1PA5 LINE L1 5333 6154 0 314 309 161 36 chr13 48833369 48833592 -53039577 + HAL1b LINE L1 289 539 -809 2141 105 3 0 chr13 48833697 48833991 -53039178 - AluSc SINE Alu -6 303 9 22 0 0 0 chr13 48834243 48834265 -53038904 + AT_rich Low_complexity Low_complexity 1 22 0 1369 157 8 0 chr13 48834386 48834628 -53038541 - L1MA2 LINE L1 0 6304 6061 3271 267 21 25 chr13 48834994 48836046 -53037123 - L1P LINE L1 -3459 2687 1640 27 81 0 0 chr13 48836052 48836114 -53037055 + AT_rich Low_complexity Low_complexity 1 62 0 271 310 7 21 chr13 48836216 48836361 -53036808 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 27 0 0 0 chr13 48836845 48836872 -53036297 + AT_rich Low_complexity Low_complexity 1 27 0 204 316 0 25 chr13 48837777 48837856 -53035313 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 23 33 0 0 chr13 48838052 48838082 -53035087 + AT_rich Low_complexity Low_complexity 1 30 0 734 136 14 75 chr13 48841171 48841318 -53031851 + MLT1A1 LTR MaLR 1 138 -227 1733 66 0 0 chr13 48894452 48894664 -52978505 + AluSg/x SINE Alu 90 301 -11 521 200 29 0 chr13 48896506 48896611 -52976558 - L1MC1 LINE L1 0 6333 6226 684 232 40 0 chr13 48896633 48896771 -52976398 - L1M4 LINE L1 -1227 4919 4782 4805 162 9 18 chr13 48896771 48897646 -52975523 - L1MC1 LINE L1 -171 6162 4736 1573 84 8 34 chr13 48897650 48897888 -52975281 - L1PA7 LINE L1 -4 6150 5919 9364 90 23 11 chr13 48897989 48898853 -52974316 - L1PA7 LINE L1 -550 5622 4744 198 0 0 0 chr13 48898853 48898875 -52974294 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 9364 90 23 11 chr13 48898875 48899652 -52973517 - L1PA7 LINE L1 -1428 4744 3977 * 13334 111 16 1 chr13 48899651 48901219 -52971950 + L1P LINE L1 1918 3524 -2622 270 0 0 0 chr13 48901219 48901249 -52971920 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 13334 111 16 1 chr13 48901249 48901704 -52971465 + L1P LINE L1 3524 3971 -2175 201 74 0 0 chr13 48901946 48901973 -52971196 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1707 206 35 8 chr13 48901973 48902370 -52970799 - MLT2B1 LTR ERVL -55 460 8 24 32 0 0 chr13 48903797 48903828 -52969341 + AT_rich Low_complexity Low_complexity 1 31 0 2174 268 70 66 chr13 48903849 48905015 -52968154 - L1MC4 LINE L1 -373 7669 6500 1013 211 33 113 chr13 48905022 48905358 -52967811 - MLT1D LTR MaLR -2 503 195 11701 139 9 13 chr13 48906095 48908146 -52965023 - L1P3 LINE L1 -1357 5104 3062 7248 110 14 21 chr13 48908472 48909882 -52963287 - L1P3 LINE L1 -4308 2153 735 1965 267 36 30 chr13 48909884 48910623 -52962546 - L1M4 LINE L1 -835 5311 4568 321 330 75 37 chr13 48911075 48911424 -52961745 + L1MC4 LINE L1 7130 7491 -551 47 92 0 0 chr13 48911826 48911957 -52961212 + AT_rich Low_complexity Low_complexity 1 131 0 47 19 0 0 chr13 48912061 48912115 -52961054 + AT_rich Low_complexity Low_complexity 1 54 0 228 259 35 17 chr13 48912267 48912383 -52960786 + (TA)n Simple_repeat Simple_repeat 2 119 0 230 122 0 61 chr13 48912900 48912949 -52960220 + LTR66 LTR ERVL 395 440 -170 1086 203 35 86 chr13 48913106 48913502 -52959667 - MER67D LTR ERV1 -4 510 200 3246 119 14 50 chr13 48913502 48914066 -52959103 + L1PA12 LINE L1 5625 6168 0 1086 203 35 86 chr13 48914066 48914257 -52958912 - MER67D LTR ERV1 -314 200 1 380 323 167 19 chr13 48914957 48915322 -52957847 - L2 LINE L2 -688 2626 2208 2227 108 3 0 chr13 48915451 48915746 -52957423 - AluSp SINE Alu -17 296 1 23 0 0 0 chr13 48915955 48915978 -52957191 + AT_rich Low_complexity Low_complexity 1 23 0 313 303 118 40 chr13 48917778 48917930 -52955239 - MLT1H1 LTR MaLR -191 364 201 2221 114 0 10 chr13 48919121 48919419 -52953750 - AluSx SINE Alu -17 295 1 195 42 0 0 chr13 48919505 48919529 -52953640 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 294 348 140 17 chr13 48921232 48921468 -52951701 - L2 LINE L2 -866 2448 2184 1434 219 0 29 chr13 48921471 48921782 -52951387 - AluJo SINE Alu -10 302 1 29 0 0 0 chr13 48921830 48921859 -52951310 + AT_rich Low_complexity Low_complexity 1 29 0 409 304 94 23 chr13 48921859 48922030 -52951139 - MIR SINE MIR -69 193 11 629 359 52 17 chr13 48922084 48922446 -52950723 - L2 LINE L2 -1178 2136 1762 1736 171 68 31 chr13 48922528 48922913 -52950256 - MSTA LTR MaLR 0 428 30 431 289 29 0 chr13 48922888 48922992 -52950177 + MLT1E2 LTR MaLR 231 337 -289 * 1724 106 12 16 chr13 48922992 48923237 -52949932 + AluY SINE Alu 47 290 -21 1007 123 0 53 chr13 48923237 48923407 -52949762 - THE1B LTR MaLR -200 164 4 26 50 0 0 chr13 48923649 48923689 -52949480 + AT_rich Low_complexity Low_complexity 1 40 0 201 154 0 0 chr13 48924368 48924407 -52948762 + (CA)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr13 48924426 48924461 -52948708 + AT_rich Low_complexity Low_complexity 1 35 0 237 333 36 27 chr13 48924732 48924843 -52948326 - MER5A DNA MER1_type -28 161 50 2336 169 35 0 chr13 48926036 48926439 -52946730 - MER47B DNA MER2_type 0 418 2 2346 57 3 10 chr13 48926550 48926849 -52946320 + AluY SINE Alu 1 297 -14 1349 175 4 19 chr13 48926982 48927251 -52945918 - L1M2 LINE L1 -491 5809 5545 34 42 0 0 chr13 48927251 48927299 -52945870 + AT_rich Low_complexity Low_complexity 1 48 0 4287 159 32 51 chr13 48927303 48928517 -52944652 - L1M2 LINE L1 -681 5610 4426 1367 109 43 0 chr13 48929849 48930059 -52943110 + L1PA11 LINE L1 5956 6174 0 729 314 75 4 chr13 48930059 48930339 -52942830 + L1ME1 LINE L1 5860 6159 -7 24 0 0 0 chr13 48930869 48930893 -52942276 + AT_rich Low_complexity Low_complexity 1 24 0 1296 278 44 40 chr13 48930895 48931391 -52941778 + MLT1D LTR MaLR 1 498 -7 23 0 0 0 chr13 48931427 48931450 -52941719 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chr13 48931535 48931579 -52941590 + AT_rich Low_complexity Low_complexity 1 44 0 2140 139 3 0 chr13 48932048 48932357 -52940812 + AluSq SINE Alu 1 310 -3 861 209 17 61 chr13 48933268 48933498 -52939671 - AluJo SINE Alu -8 304 85 27 0 0 0 chr13 48933906 48933933 -52939236 + AT_rich Low_complexity Low_complexity 1 27 0 210 175 25 0 chr13 48934373 48934413 -52938756 + CT-rich Low_complexity Low_complexity 2 42 0 694 292 73 84 chr13 48934463 48935551 -52937618 - Charlie7 DNA MER1_type -1202 1410 335 2181 97 3 0 chr13 48936129 48936419 -52936750 - AluSg SINE Alu -9 301 11 26 74 0 0 chr13 48937732 48937786 -52935383 + AT_rich Low_complexity Low_complexity 1 54 0 2158 154 42 13 chr13 48938730 48939107 -52934062 - MER61D LTR ERV1 0 501 114 23 0 0 0 chr13 48939630 48939653 -52933516 + AT_rich Low_complexity Low_complexity 1 23 0 2340 156 72 8 chr13 48939712 48940198 -52932971 - L1MA9 LINE L1 0 6312 5796 619 304 6 0 chr13 48940202 48940373 -52932796 - MER70B LTR ERVL -317 261 90 * 805 238 0 6 chr13 48940372 48940532 -52932637 - MER70A LTR ERVL -313 159 1 3217 211 53 48 chr13 48940601 48941593 -52931576 + L1 LINE L1 2932 3928 -2218 4377 53 13 5 chr13 48941696 48942321 -52930848 - L1P3 LINE L1 -336 5818 5191 2922 88 17 0 chr13 48942321 48942739 -52930430 + L1PA7 LINE L1 5728 6152 -2 232 212 95 175 chr13 48942910 48943099 -52930070 + MLT1F-int LTR MaLR 1085 1258 -113 379 297 108 57 chr13 48943187 48943703 -52929466 + MLT1F LTR MaLR 1 553 -2 22 56 0 0 chr13 48943823 48943859 -52929310 + AT_rich Low_complexity Low_complexity 1 36 0 290 319 62 21 chr13 48943988 48944132 -52929037 - LTR65 LTR ERV1 -6 663 514 2021 171 3 12 chr13 48944272 48944612 -52928557 + MER2 DNA MER2_type 1 337 -8 546 270 43 0 chr13 48944658 48944821 -52928348 - LTR65 LTR ERV1 -499 170 1 1799 144 10 24 chr13 48944956 48945248 -52927921 + AluJb SINE Alu 1 288 -24 1001 211 37 97 chr13 48945358 48945738 -52927431 - MLT1A2 LTR MaLR -17 357 1 423 267 198 4 chr13 48946935 48947167 -52926002 + HAL1 LINE L1 1485 1761 -746 881 305 55 31 chr13 48947993 48948446 -52924723 - LTR16B LTR ERVL 0 464 1 426 257 14 35 chr13 48948826 48948970 -52924199 - HERV16 LTR ERVL -303 4693 4553 280 269 23 54 chr13 48949315 48949445 -52923724 - HERV16 LTR ERVL -684 4312 4187 252 292 15 0 chr13 48949480 48949545 -52923624 + MLT1E1 LTR MaLR 2 67 -587 1182 277 24 70 chr13 48949740 48950195 -52922974 + MLT1E1 LTR MaLR 221 654 0 734 349 17 7 chr13 48950199 48950497 -52922672 - HERV16 LTR ERVL -1195 4459 4159 207 0 0 0 chr13 48951589 48951612 -52921557 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2312 128 11 19 chr13 48951832 48952199 -52920970 + THE1B LTR MaLR 1 364 0 7737 122 50 2 chr13 48952199 48953560 -52919609 + THE1B-int LTR MaLR 1 1647 -4 2388 127 5 19 chr13 48953569 48953938 -52919231 + THE1B LTR MaLR 1 364 0 903 350 39 7 chr13 48954021 48954427 -52918742 - HERV16 LTR ERVL -2760 2236 1818 338 307 74 68 chr13 48954662 48954838 -52918331 + MER5A DNA MER1_type 7 183 -6 235 307 78 39 chr13 48954850 48955029 -52918140 + MLT1J2 LTR MaLR 265 450 0 270 153 0 0 chr13 48955288 48955347 -52917822 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1792 132 0 4 chr13 48956367 48956625 -52916544 + AluSg SINE Alu 23 279 -31 292 211 0 0 chr13 48956965 48957017 -52916152 + LTR40c LTR ERVL 161 212 -253 1535 154 94 25 chr13 48957054 48957501 -52915668 + pTR5 LTR ERV1 740 1217 -1221 265 207 0 17 chr13 48957501 48957559 -52915610 - MLT1B LTR MaLR -333 57 1 2237 95 0 0 chr13 48957657 48957965 -52915204 - AluSx SINE Alu 0 308 1 585 90 0 0 chr13 48958558 48958669 -52914500 - AluY SINE Alu 0 315 205 1715 176 146 8 chr13 48958937 48959313 -52913856 + MSTA LTR MaLR 1 428 0 2305 78 0 10 chr13 48959576 48959884 -52913285 - AluY SINE Alu -6 305 1 1682 154 185 6 chr13 48959925 48960288 -52912881 - MSTA LTR MaLR 0 428 1 23 33 0 0 chr13 48960375 48960405 -52912764 + AT_rich Low_complexity Low_complexity 1 30 0 315 228 51 0 chr13 48960707 48960786 -52912383 + MLT1G LTR MaLR 1 83 -512 725 284 120 61 chr13 48960813 48961242 -52911927 + MLT1G LTR MaLR 81 577 -13 1689 197 0 7 chr13 48961382 48961691 -52911478 - AluJb SINE Alu -3 309 3 2609 180 34 13 chr13 48962010 48962537 -52910632 + MER34 LTR ERV1 4 541 -1 496 168 5 63 chr13 48963190 48963381 -52909788 + GA-rich Low_complexity Low_complexity 1 180 0 424 267 74 19 chr13 48963464 48963769 -52909400 + L1ME2 LINE L1 5644 5967 -197 408 333 68 0 chr13 48965111 48965273 -52907896 - MIR SINE MIR -4 258 86 198 136 0 0 chr13 48965294 48965338 -52907831 + (TA)n Simple_repeat Simple_repeat 2 45 0 42 48 0 0 chr13 48965659 48965722 -52907447 + AT_rich Low_complexity Low_complexity 1 63 0 285 248 71 57 chr13 48967352 48967493 -52905676 - MLT1J LTR MaLR -330 181 39 23 0 0 0 chr13 48968865 48968888 -52904281 + AT_rich Low_complexity Low_complexity 1 23 0 361 315 68 14 chr13 48969674 48969820 -52903349 + MER91B DNA MER1_type 9 162 -28 8116 51 9 1 chr13 48970020 48971065 -52902104 - L1PA5 LINE L1 -1960 4186 3134 9384 43 3 6 chr13 48971065 48973068 -52900101 + L1PA5 LINE L1 4170 6146 -8 1050 211 51 75 chr13 48973337 48973669 -52899500 + MLT1A1 LTR MaLR 42 365 0 1324 242 60 14 chr13 48975105 48975452 -52897717 + MLT1A1 LTR MaLR 1 363 -2 1167 231 55 60 chr13 48975794 48976158 -52897011 + MLT1A2 LTR MaLR 1 362 -12 23 0 0 0 chr13 48976371 48976394 -52896775 + AT_rich Low_complexity Low_complexity 1 23 0 773 86 0 17 chr13 48976396 48976662 -52896507 + AluY SINE Alu 1 308 -3 3336 147 71 3 chr13 48976664 48977257 -52895912 + Tigger3(Golem) DNA MER2_type 2395 3027 -2 210 302 0 23 chr13 48977275 48977361 -52895808 + (ATTAG)n Simple_repeat Simple_repeat 4 87 0 697 263 116 0 chr13 48977380 48977570 -52895599 - MER58A DNA MER1_type -12 212 1 33 66 0 0 chr13 48977680 48977741 -52895428 + AT_rich Low_complexity Low_complexity 1 61 0 340 278 125 21 chr13 48978424 48978568 -52894601 - MIR SINE MIR -85 177 19 22 35 0 0 chr13 48980207 48980236 -52892933 + AT_rich Low_complexity Low_complexity 1 29 0 37 0 0 0 chr13 48981209 48981246 -52891923 + AT_rich Low_complexity Low_complexity 1 37 0 343 286 127 7 chr13 48981645 48981809 -52891360 - MIR SINE MIR -66 142 9 281 159 16 0 chr13 48982208 48982271 -52890898 + (TA)n Simple_repeat Simple_repeat 2 65 0 27 29 0 0 chr13 48983735 48983769 -52889400 + AT_rich Low_complexity Low_complexity 1 34 0 418 315 44 30 chr13 48984034 48984386 -52888783 - L1MC/D LINE L1 -577 5585 5272 1201 221 0 5 chr13 48984397 48984610 -52888559 - MER58A DNA MER1_type -6 218 7 22 103 0 0 chr13 48985270 48985348 -52887821 + AT_rich Low_complexity Low_complexity 1 78 0 253 165 13 51 chr13 48985916 48985995 -52887174 + CT-rich Low_complexity Low_complexity 3 78 0 21 71 0 0 chr13 48986248 48986290 -52886879 + AT_rich Low_complexity Low_complexity 1 42 0 2134 110 0 0 chr13 48986435 48986736 -52886433 + AluSg SINE Alu 1 301 -9 356 351 35 6 chr13 48986839 48987010 -52886159 + L2 LINE L2 836 1011 -2303 239 280 121 45 chr13 48987057 48987189 -52885980 + L2 LINE L2 1164 1305 -2009 833 262 57 37 chr13 48987292 48987693 -52885476 + Charlie4a DNA MER1_type 16 424 -84 473 330 55 58 chr13 48987761 48988106 -52885063 + L2 LINE L2 1381 1724 -1590 345 315 123 10 chr13 48988102 48988305 -52884864 + L2 LINE L2 3083 3308 -5 * 619 241 63 6 chr13 48988597 48988755 -52884414 + MER45A DNA AcHobo 12 178 0 948 262 152 53 chr13 48990667 48991121 -52882048 + MLT1D LTR MaLR 7 505 0 185 133 0 0 chr13 48991189 48991219 -52881950 - L2 LINE L2 -226 3046 3017 1496 228 0 3 chr13 48991498 48991787 -52881382 - AluJo SINE Alu -24 288 1 1668 206 38 8 chr13 48993070 48993466 -52879703 + MLT2B1 LTR ERVL 8 460 -55 201 74 0 0 chr13 48993466 48993493 -52879676 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 13379 111 16 1 chr13 48993734 48994189 -52878980 - L1P LINE L1 -2175 3971 3524 270 0 0 0 chr13 48994189 48994219 -52878950 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 13379 111 16 1 chr13 48994219 48995787 -52877382 - L1P LINE L1 -2622 3524 1918 9521 89 4 8 chr13 48995786 48996560 -52876609 + L1PA7 LINE L1 3977 4753 -1401 * 198 0 0 0 chr13 48996560 48996582 -52876587 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 9521 89 4 8 chr13 48996582 48997992 -52875177 + L1PA7 LINE L1 4753 6154 0 497 271 36 14 chr13 48998079 48998219 -52874950 - MER45A DNA AcHobo -3 175 33 216 0 0 0 chr13 48998276 48998300 -52874869 + (TC)n Simple_repeat Simple_repeat 2 25 0 285 210 0 0 chr13 48998300 48998362 -52874807 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 23 33 0 0 chr13 48998442 48998472 -52874697 + AT_rich Low_complexity Low_complexity 1 30 0 186 118 0 0 chr13 48998475 48998509 -52874660 + (GA)n Simple_repeat Simple_repeat 1 34 0 2132 111 40 3 chr13 49001797 49002095 -52871074 + AluSc SINE Alu 1 309 0 442 323 57 10 chr13 49002551 49002743 -52870426 - MIR SINE MIR -8 254 54 1681 78 0 0 chr13 49002845 49003064 -52870105 - L1PA7 LINE L1 -11 6143 5925 2082 137 0 0 chr13 49003589 49003896 -52869273 + AluSg SINE Alu 2 308 -2 30 27 0 0 chr13 49004016 49004053 -52869116 + AT_rich Low_complexity Low_complexity 1 37 0 286 270 45 0 chr13 49004936 49005025 -52868144 - MER5A DNA MER1_type -86 103 11 241 309 49 60 chr13 49006175 49006525 -52866644 - L1MC5 LINE L1 -62 7899 7554 614 308 117 24 chr13 49006792 49007309 -52865860 - L1MC5 LINE L1 -770 7191 6669 27 62 0 0 chr13 49007339 49007387 -52865782 + AT_rich Low_complexity Low_complexity 1 48 0 2064 82 11 0 chr13 49007676 49007946 -52865223 - AluY SINE Alu -7 304 32 24 53 0 0 chr13 49007996 49008034 -52865135 + AT_rich Low_complexity Low_complexity 1 38 0 442 269 60 0 chr13 49008203 49008370 -52864799 - L1MC5 LINE L1 -2023 5785 5609 445 129 35 12 chr13 49008384 49008469 -52864700 - L1MC1 LINE L1 0 6333 6247 2382 74 0 0 chr13 49008491 49008802 -52864367 - AluY SINE Alu 0 311 1 1511 241 85 42 chr13 49008802 49009403 -52863766 - L1MC5 LINE L1 -938 5208 4582 1235 201 112 4 chr13 49009435 49009703 -52863466 - AluJo SINE Alu -15 297 1 310 317 103 33 chr13 49009714 49009985 -52863184 - L1MC/D LINE L1 -2264 5544 5255 4978 197 14 23 chr13 49010077 49011125 -52862044 - L1MA8 LINE L1 0 6291 5267 1410 193 0 40 chr13 49011125 49011425 -52861744 - AluJb SINE Alu -14 288 1 4978 197 14 23 chr13 49011425 49012230 -52860939 - L1MA8 LINE L1 -1024 5267 4457 * 5818 99 12 50 chr13 49012206 49013312 -52859857 - L1PB1 LINE L1 0 6151 5082 * 7800 225 76 22 chr13 49013308 49013591 -52859578 - L1PB1 LINE L1 -1647 5918 5652 5410 159 23 33 chr13 49013591 49014673 -52858496 + MER11C LTR ERVK 1 1071 0 7800 225 76 22 chr13 49014673 49014787 -52858382 - L1PB1 LINE L1 -1913 5652 5546 1798 149 23 10 chr13 49014787 49015089 -52858080 + AluSp SINE Alu 1 306 -7 7800 225 76 22 chr13 49015089 49015637 -52857532 - L1PB1 LINE L1 -2019 5546 5029 1911 146 3 0 chr13 49015637 49015925 -52857244 + AluSx SINE Alu 10 298 -14 7800 225 76 22 chr13 49015925 49017702 -52855467 - L1PB1 LINE L1 -2536 5029 3045 451 136 242 23 chr13 49017706 49017838 -52855331 - MER4C LTR ERV1 -27 438 278 376 125 31 0 chr13 49017850 49017914 -52855255 - MER4A LTR ERV1 -233 431 366 1846 269 104 20 chr13 49017928 49018874 -52854295 - L1PB1 LINE L1 -4533 3032 2008 1558 252 56 84 chr13 49018896 49019488 -52853681 - L1PB1 LINE L1 -6449 1040 466 2470 248 73 33 chr13 49020655 49021603 -52851566 - L1MCa LINE L1 -5030 1015 68 1623 184 13 3 chr13 49021603 49021908 -52851261 - AluJb SINE Alu -4 308 1 2470 248 73 33 chr13 49021908 49021979 -52851190 - L1MCa LINE L1 -5977 68 1 22 35 0 0 chr13 49022115 49022144 -52851025 + AT_rich Low_complexity Low_complexity 1 29 0 213 282 78 78 chr13 49022812 49022954 -52850215 + MIR3 SINE MIR 3 144 -64 21 0 0 0 chr13 49023247 49023268 -52849901 + AT_rich Low_complexity Low_complexity 1 21 0 2010 124 0 0 chr13 49023461 49023767 -52849402 - AluSx SINE Alu 0 308 3 345 314 65 6 chr13 49024152 49024321 -52848848 + MLT1J2 LTR MaLR 39 217 -233 31 96 0 0 chr13 49024597 49024691 -52848478 + AT_rich Low_complexity Low_complexity 1 94 0 31 44 0 0 chr13 49024934 49024979 -52848190 + AT_rich Low_complexity Low_complexity 1 45 0 317 215 11 0 chr13 49025135 49025228 -52847941 + CT-rich Low_complexity Low_complexity 2 95 0 25 0 0 0 chr13 49027223 49027248 -52845921 + AT_rich Low_complexity Low_complexity 1 25 0 972 40 0 8 chr13 49027254 49027378 -52845791 - L1PA6 LINE L1 -9 6145 6023 906 199 22 62 chr13 49027691 49027917 -52845252 - MER20 DNA MER1_type 0 219 3 1799 95 4 15 chr13 49029043 49029444 -52843725 + L1PA8 LINE L1 5899 6296 0 534 103 0 0 chr13 49029845 49029923 -52843246 + (TA)n Simple_repeat Simple_repeat 2 79 0 5985 106 34 11 chr13 49030054 49031354 -52841815 - L1PA13 LINE L1 -5 6158 4855 192 125 0 0 chr13 49032724 49032756 -52840413 + (CA)n Simple_repeat Simple_repeat 1 32 0 1643 212 87 40 chr13 49032970 49033466 -52839703 + LTR40a LTR ERVL 1 519 0 463 266 131 68 chr13 49033528 49034016 -52839153 - Charlie2a DNA MER1_type -1813 1049 531 417 123 0 0 chr13 49034308 49034373 -52838796 + (TG)n Simple_repeat Simple_repeat 1 65 0 307 257 20 10 chr13 49034458 49034559 -52838610 + (TA)n Simple_repeat Simple_repeat 1 102 0 243 203 0 0 chr13 49034577 49034636 -52838533 + (TA)n Simple_repeat Simple_repeat 1 59 0 21 36 0 0 chr13 49037749 49037777 -52835392 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 49037835 49037858 -52835311 + AT_rich Low_complexity Low_complexity 1 23 0 196 323 123 43 chr13 49040072 49040372 -52832797 - L3 LINE CR1 -177 1400 1077 777 204 96 9 chr13 49040572 49040792 -52832377 + L1MB2 LINE L1 5924 6162 -9 7931 164 49 16 chr13 49041144 49042635 -52830534 + L1PA15-16 LINE L1 709 2198 -4651 2907 142 20 8 chr13 49042635 49043143 -52830026 + L1PA16 LINE L1 5653 6166 0 784 181 32 26 chr13 49043144 49043299 -52829870 + AluJo SINE Alu 127 282 -30 297 51 0 0 chr13 49043302 49043341 -52829828 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 24 32 0 0 chr13 49043344 49043375 -52829794 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr13 49044316 49044351 -52828818 + AT_rich Low_complexity Low_complexity 1 35 0 5066 151 43 25 chr13 49044634 49045741 -52827428 - L1MA6 LINE L1 0 6300 5158 545 287 250 19 chr13 49046796 49047220 -52825949 - MLT1G1 LTR MaLR -6 589 42 236 318 19 9 chr13 49047796 49047903 -52825266 - L2 LINE L2 -54 3259 3152 1336 174 27 164 chr13 49048291 49048430 -52824739 - MER67C LTR ERV1 -243 271 328 2508 126 0 0 chr13 49048430 49048794 -52824375 - THE1B LTR MaLR 0 364 1 1336 174 27 164 chr13 49048794 49049074 -52824095 - MER67C LTR ERV1 -185 329 12 241 206 38 60 chr13 49049158 49049296 -52823873 + (TA)n Simple_repeat Simple_repeat 1 136 -44 1759 189 70 24 chr13 49049296 49049709 -52823460 - MSTB1 LTR MaLR 0 432 1 241 206 38 60 chr13 49049709 49049754 -52823415 + (TA)n Simple_repeat Simple_repeat 136 180 0 1841 184 18 9 chr13 49049863 49050199 -52822970 + MER2 DNA MER2_type 1 339 -6 239 301 32 11 chr13 49050210 49050303 -52822866 - MIR SINE MIR -108 154 60 40 21 0 0 chr13 49050407 49050454 -52822715 + AT_rich Low_complexity Low_complexity 1 47 0 4365 57 17 53 chr13 49050606 49051691 -52821478 + MER11A LTR ERVK 1 1266 0 558 183 63 8 chr13 49052024 49052150 -52821019 + LTR54B LTR ERV1 1 133 -365 216 0 0 0 chr13 49052183 49052207 -52820962 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 5027 154 21 29 chr13 49052277 49053172 -52819997 - MER49 LTR ERV1 -33 890 3 574 179 65 30 chr13 49053174 49053342 -52819827 + LTR54B LTR ERV1 213 386 -112 412 210 0 40 chr13 49053348 49053448 -52819721 + MER57A-int LTR ERV1 7441 7536 -1 779 198 34 128 chr13 49053480 49053778 -52819391 + MER57A LTR ERV1 68 337 -66 267 237 26 13 chr13 49053766 49053842 -52819327 + LTR54 LTR ERV1 432 508 -2 * 186 43 0 0 chr13 49053993 49054016 -52819153 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 234 294 175 17 chr13 49054686 49054863 -52818306 - MIR SINE MIR 0 262 58 386 281 59 22 chr13 49055104 49055397 -52817772 - MLT1F LTR MaLR -1 530 227 180 0 0 0 chr13 49057019 49057039 -52816130 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1639 160 14 28 chr13 49057042 49057329 -52815840 - AluSg SINE Alu -27 283 1 180 0 0 0 chr13 49057435 49057455 -52815714 + (CTCA)n Simple_repeat Simple_repeat 2 21 0 366 42 0 0 chr13 49057545 49057593 -52815576 + (TG)n Simple_repeat Simple_repeat 1 48 0 3285 214 73 19 chr13 49058059 49059159 -52814010 - L1MB1 LINE L1 -8 6160 5005 26 0 0 0 chr13 49059165 49059191 -52813978 + AT_rich Low_complexity Low_complexity 1 26 0 332 250 24 0 chr13 49059191 49059275 -52813894 - L1MB1 LINE L1 -1317 4829 4744 1885 179 29 0 chr13 49059275 49059621 -52813548 - MER46B DNA MER2_type 0 236 6 2011 226 65 25 chr13 49059625 49060258 -52812911 - L1MB1 LINE L1 -1395 4751 4094 360 151 0 0 chr13 49060258 49060311 -52812858 + Alu SINE Alu 1 53 -249 1094 280 92 36 chr13 49060317 49060999 -52812170 + L1M3de LINE L1 912 1781 -4522 1669 264 59 45 chr13 49061010 49061578 -52811591 + L1M3de LINE L1 1843 2401 -3981 342 0 0 0 chr13 49061578 49061616 -52811553 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1669 264 59 45 chr13 49061616 49062159 -52811010 + L1M3de LINE L1 2401 2983 -3399 890 332 16 51 chr13 49062241 49062663 -52810506 + L1M3d LINE L1 17 685 -5206 304 288 56 46 chr13 49062710 49062861 -52810308 + L1M3d LINE L1 257 672 -5219 355 307 7 21 chr13 49063004 49063144 -52810025 + L1M3d LINE L1 664 801 -5100 282 200 0 0 chr13 49063151 49063201 -52809968 + Tigger1 DNA MER2_type 2369 2418 0 21 36 0 0 chr13 49063892 49063920 -52809249 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 49064176 49064200 -52808969 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 49064547 49064567 -52808602 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2789 168 24 0 chr13 49064567 49065068 -52808101 - L1MA6 LINE L1 -6 6294 5782 488 133 70 0 chr13 49065068 49065211 -52807958 + (TA)n Simple_repeat Simple_repeat 2 154 0 2695 134 4 22 chr13 49065213 49065675 -52807494 - L1MA6 LINE L1 -509 5791 5338 322 158 89 50 chr13 49066248 49066349 -52806820 - L1MA8 LINE L1 -4 6287 6183 272 149 0 0 chr13 49066349 49066396 -52806773 - MADE1 DNA Mariner -33 47 1 469 196 10 0 chr13 49066396 49066498 -52806671 - L1MA8 LINE L1 -158 6133 6031 387 41 0 0 chr13 49066498 49066547 -52806622 + (TG)n Simple_repeat Simple_repeat 2 50 0 1416 180 32 39 chr13 49066550 49066833 -52806336 - AluJo SINE Alu -31 281 1 239 291 0 0 chr13 49067480 49067559 -52805610 + HsTC2 DNA Tc2 1 79 -1819 255 61 0 0 chr13 49068056 49068089 -52805080 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 1185 204 9 0 chr13 49068315 49068540 -52804629 - AluJb SINE Alu -31 281 55 1665 80 13 4 chr13 49068903 49069129 -52804040 + AluY SINE Alu 1 228 -83 204 40 0 0 chr13 49069140 49069165 -52804004 + (A)n Simple_repeat Simple_repeat 1 25 0 386 307 84 30 chr13 49069344 49069546 -52803623 - MIR SINE MIR -40 222 10 21 36 0 0 chr13 49071694 49071722 -52801447 + AT_rich Low_complexity Low_complexity 1 28 0 343 311 11 0 chr13 49072176 49072266 -52800903 - L2 LINE L2 -4 3309 3219 21 36 0 0 chr13 49072266 49072294 -52800875 + AT_rich Low_complexity Low_complexity 1 28 0 42 0 0 0 chr13 49072416 49072458 -52800711 + AT_rich Low_complexity Low_complexity 1 42 0 334 256 116 8 chr13 49072655 49072776 -52800393 + L1MC1 LINE L1 3085 3218 -2928 2035 134 14 0 chr13 49072783 49073074 -52800095 + AluSx SINE Alu 1 295 -17 2146 237 36 5 chr13 49073093 49073727 -52799442 + L1MC1 LINE L1 4334 4987 -1159 1757 190 13 13 chr13 49073777 49074093 -52799076 - MER1B DNA MER1_type -1 338 23 961 216 6 0 chr13 49074089 49074270 -52798899 - MER1B DNA MER1_type -115 182 1 * 4930 177 54 33 chr13 49074274 49074413 -52798756 + L1MC1 LINE L1 5263 5398 -935 1332 138 26 11 chr13 49074413 49074681 -52798488 + L1MA8 LINE L1 6019 6290 -1 4930 177 54 33 chr13 49074681 49075590 -52797579 + L1MC1 LINE L1 5398 6333 0 279 320 141 8 chr13 49076367 49076495 -52796674 + MIR SINE MIR 88 232 -30 1097 89 0 6 chr13 49076733 49076890 -52796279 - L1PA11 LINE L1 -1 6173 6018 25 51 0 0 chr13 49077191 49077230 -52795939 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr13 49077773 49077797 -52795372 + AT_rich Low_complexity Low_complexity 1 24 0 203 231 31 0 chr13 49078100 49078165 -52795004 + (TA)n Simple_repeat Simple_repeat 2 68 0 194 0 39 0 chr13 49079380 49079406 -52793763 + (TA)n Simple_repeat Simple_repeat 2 28 0 304 274 0 60 chr13 49080140 49080224 -52792945 + MIR SINE MIR 3 81 -181 585 307 28 14 chr13 49080232 49080450 -52792719 + MIR SINE MIR 4 224 -38 258 105 0 0 chr13 49080475 49080513 -52792656 + (TG)n Simple_repeat Simple_repeat 1 38 0 285 149 0 0 chr13 49080513 49080580 -52792589 + (GA)n Simple_repeat Simple_repeat 2 68 0 3504 319 131 25 chr13 49080670 49082834 -52790335 - L2 LINE L2 -1 3312 917 979 129 0 0 chr13 49082834 49082974 -52790195 + AluSg/x SINE Alu 154 293 -17 417 371 65 14 chr13 49082975 49083266 -52789903 - L2 LINE L2 -2388 926 621 236 163 23 0 chr13 49083572 49083615 -52789554 - MER6 DNA MER2_type -372 493 450 2260 200 50 27 chr13 49083615 49084090 -52789079 - MER6 DNA MER2_type -378 487 2 192 325 51 43 chr13 49084606 49084723 -52788446 + L2 LINE L2 2776 2893 -421 295 318 142 34 chr13 49084747 49084986 -52788183 + L2 LINE L2 3016 3280 -33 21 0 0 0 chr13 49084996 49085017 -52788152 + AT_rich Low_complexity Low_complexity 1 21 0 193 362 21 0 chr13 49085089 49085183 -52787986 - MIR SINE MIR -67 141 46 253 271 74 25 chr13 49085442 49085564 -52787605 + MLT1L LTR MaLR 426 553 -62 243 244 0 0 chr13 49085707 49085752 -52787417 + (TG)n Simple_repeat Simple_repeat 2 46 0 2217 112 52 11 chr13 49085894 49086242 -52786927 - THE1B LTR MaLR -2 362 1 255 31 0 0 chr13 49086356 49086388 -52786781 + (TG)n Simple_repeat Simple_repeat 1 32 0 1538 103 5 0 chr13 49087692 49087906 -52785263 - AluSg SINE Alu -93 217 3 1678 209 61 14 chr13 49089105 49089550 -52783619 - L1MD3 LINE L1 -12 7983 7518 895 313 67 34 chr13 49090302 49090750 -52782419 + L1M2 LINE L1 13 475 -6374 289 360 67 34 chr13 49090919 49091097 -52782072 + L1M2 LINE L1 773 956 -5893 232 364 12 6 chr13 49091632 49091794 -52781375 + L1PA15-16 LINE L1 1401 1563 -5286 298 284 20 10 chr13 49091794 49091896 -52781273 + L1PA15-16 LINE L1 1472 1574 -5275 * 4906 251 26 20 chr13 49091871 49094235 -52778934 + L1PA15-16 LINE L1 1335 4792 -2057 204 135 0 0 chr13 49094869 49094906 -52778263 + (TA)n Simple_repeat Simple_repeat 2 38 0 426 276 26 33 chr13 49094909 49095061 -52778108 - L1MC4 LINE L1 -1340 6702 6552 275 239 91 11 chr13 49096315 49096403 -52776766 - MIR SINE MIR -46 216 122 243 333 0 0 chr13 49097465 49097537 -52775632 + MER58A DNA MER1_type 1 72 -152 218 398 93 6 chr13 49097833 49097994 -52775175 - MIR3 SINE MIR -4 204 30 260 289 67 37 chr13 49098002 49098137 -52775032 + L2 LINE L2 3175 3313 0 631 289 34 29 chr13 49098423 49098631 -52774538 + MER58A DNA MER1_type 1 209 -15 1127 260 78 106 chr13 49098631 49098721 -52774448 + L1MC4 LINE L1 5978 6069 -1973 2012 125 27 0 chr13 49098721 49099016 -52774153 + AluSx SINE Alu 1 303 -9 1127 260 78 106 chr13 49099016 49099552 -52773617 + L1MC4 LINE L1 6069 6618 -1424 1917 213 136 40 chr13 49099552 49100147 -52773022 + MER82 DNA MER2_type 2 653 0 1127 260 78 106 chr13 49100147 49100329 -52772840 + L1MC4 LINE L1 6618 6804 -1238 2371 81 3 0 chr13 49100329 49100639 -52772530 - AluY SINE Alu 0 311 1 1127 260 78 106 chr13 49100639 49100871 -52772298 + L1MC4 LINE L1 6804 7002 -1040 616 236 54 43 chr13 49100874 49101154 -52772015 + Charlie1 DNA MER1_type 2454 2736 -25 337 250 67 0 chr13 49101568 49101672 -52771497 - MER103 DNA DNA -47 119 9 206 315 0 0 chr13 49102451 49102505 -52770664 + (CATA)n Simple_repeat Simple_repeat 2 55 0 448 376 19 0 chr13 49102565 49102770 -52770399 + MIR SINE MIR 28 236 -26 570 284 25 59 chr13 49104107 49104223 -52768946 + LTR16A1 LTR ERVL 207 312 -145 2313 88 3 0 chr13 49104223 49104528 -52768641 + AluSc SINE Alu 1 306 -3 570 284 25 59 chr13 49104528 49104650 -52768519 + LTR16A1 LTR ERVL 312 437 -20 558 322 83 8 chr13 49105694 49105936 -52767233 + MIR SINE MIR 2 261 -1 241 273 102 70 chr13 49106324 49106452 -52766717 - L2 LINE L2 0 3313 3182 189 304 0 0 chr13 49106921 49106967 -52766202 + MIR SINE MIR 216 261 -1 201 241 0 0 chr13 49107371 49107425 -52765744 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 3776 124 64 42 chr13 49107526 49108294 -52764875 - LTR1 LTR ERV1 0 785 1 297 89 0 0 chr13 49109642 49109687 -52763482 + (CA)n Simple_repeat Simple_repeat 1 45 0 1732 197 0 3 chr13 49109746 49110050 -52763119 + AluJo SINE Alu 1 303 -9 391 340 61 44 chr13 49110112 49110456 -52762713 - L2 LINE L2 -1 3312 2963 277 302 84 58 chr13 49110737 49110962 -52762207 - L2 LINE L2 -716 2598 2368 367 299 92 18 chr13 49111008 49111225 -52761944 - L2 LINE L2 -1199 2115 1883 313 235 88 29 chr13 49111649 49111785 -52761384 + L1ME4a LINE L1 5739 5882 -239 27 0 0 0 chr13 49112025 49112052 -52761117 + AT_rich Low_complexity Low_complexity 1 27 0 312 27 0 0 chr13 49112268 49112305 -52760864 + (TG)n Simple_repeat Simple_repeat 2 38 0 305 271 0 0 chr13 49112315 49112385 -52760784 + L1MC4 LINE L1 6616 6685 -1357 26 30 0 0 chr13 49112496 49112529 -52760640 + AT_rich Low_complexity Low_complexity 1 33 0 1785 177 85 3 chr13 49112717 49113107 -52760062 + L1MC3 LINE L1 7352 7773 -12 183 42 0 0 chr13 49113115 49113139 -52760030 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 491 299 23 35 chr13 49113154 49113328 -52759841 + L1PA13 LINE L1 788 959 -6615 268 345 44 0 chr13 49113359 49113472 -52759697 + L1PA13 LINE L1 1044 1161 -6413 225 378 0 0 chr13 49113851 49113949 -52759220 + L1PA13 LINE L1 2083 2180 -5401 4198 256 28 19 chr13 49114185 49115872 -52757297 + L1PA13 LINE L1 2183 3892 -3692 1053 127 0 0 chr13 49115891 49116057 -52757112 + (TA)n Simple_repeat Simple_repeat 1 166 0 30 27 0 0 chr13 49117386 49117423 -52755746 + AT_rich Low_complexity Low_complexity 1 37 0 354 289 60 28 chr13 49117545 49117794 -52755375 + HAL1 LINE L1 1404 1660 -847 1773 188 36 0 chr13 49118919 49119248 -52753921 + MER2 DNA MER2_type 3 343 -1 1030 250 69 29 chr13 49120225 49120559 -52752610 - LTR52 LTR ERVL -44 377 27 1904 218 14 0 chr13 49120559 49121004 -52752165 + L1MA4 LINE L1 5844 6294 -6 1030 250 69 29 chr13 49121004 49121017 -52752152 - LTR52 LTR ERVL -394 27 16 4549 137 65 15 chr13 49122609 49124034 -52749135 + L1PA16 LINE L1 4686 6157 -9 23 0 0 0 chr13 49124049 49124072 -52749097 + AT_rich Low_complexity Low_complexity 1 23 0 223 341 59 0 chr13 49125304 49125389 -52747780 - MIR SINE MIR -165 97 8 279 292 62 10 chr13 49125435 49125531 -52747638 - LTR37B LTR ERV1 -334 134 34 264 243 40 14 chr13 49125619 49125693 -52747476 - MER31-int LTR ERV1 -745 4191 4116 298 349 8 16 chr13 49125834 49125963 -52747206 - MER31-int LTR ERV1 -888 4048 3921 242 254 154 73 chr13 49126907 49127017 -52746152 + L2 LINE L2 3154 3272 0 27 29 0 0 chr13 49127204 49127238 -52745931 + AT_rich Low_complexity Low_complexity 1 34 0 258 32 0 0 chr13 49127594 49127625 -52745544 + (TG)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr13 49127674 49127707 -52745462 + AT_rich Low_complexity Low_complexity 1 33 0 484 161 71 18 chr13 49128351 49128463 -52744706 + L1M3e LINE L1 1 118 -6912 4001 83 0 45 chr13 49128463 49128715 -52744454 - MER41A LTR ERV1 0 554 292 6179 18 0 3 chr13 49128715 49129428 -52743741 - L1PA3 LINE L1 -3 6152 5442 4001 83 0 45 chr13 49129428 49129755 -52743414 - MER41A LTR ERV1 -262 292 1 4900 235 47 100 chr13 49129770 49131641 -52741528 + L1M3e LINE L1 137 1694 -5413 1762 184 3 0 chr13 49131641 49131934 -52741235 + AluSx SINE Alu 1 294 -18 4900 235 47 100 chr13 49131934 49133036 -52740133 + L1M3e LINE L1 1694 2852 -4255 1634 194 42 15 chr13 49133036 49133173 -52739996 + MER2 DNA MER2_type 1 133 -212 3150 140 18 4 chr13 49133173 49133680 -52739489 - MER75 DNA T2_type 0 514 1 1634 194 42 15 chr13 49133680 49133877 -52739292 + MER2 DNA MER2_type 133 344 -1 12648 213 35 31 chr13 49133897 49134892 -52738277 + L1MA10 LINE L1 3068 4058 -3695 2122 102 6 32 chr13 49134892 49135206 -52737963 - AluY SINE Alu -5 306 1 12648 213 35 31 chr13 49135206 49135931 -52737238 + L1MA10 LINE L1 4058 4779 -2974 1566 123 5 0 chr13 49135931 49136150 -52737019 - AluSq SINE Alu -18 295 76 12648 213 35 31 chr13 49136150 49138912 -52734257 + L1MA10 LINE L1 4779 7749 -4 386 263 75 70 chr13 49138979 49139165 -52734004 - LTR16C LTR ERVL 0 491 305 2113 270 181 34 chr13 49139751 49140760 -52732409 - L1MC4 LINE L1 -152 7890 6733 376 248 10 10 chr13 49140768 49140869 -52732300 - L1MC4 LINE L1 -1475 6567 6467 1888 69 0 30 chr13 49140907 49141169 -52732000 - AluY SINE Alu -2 309 56 3653 158 88 36 chr13 49142926 49143711 -52729458 + LTR1B LTR ERV1 1 826 0 2030 139 0 0 chr13 49143822 49144117 -52729052 - AluSx SINE Alu -17 295 1 492 111 0 0 chr13 49144382 49144463 -52728706 + (TG)n Simple_repeat Simple_repeat 2 82 0 2353 262 21 29 chr13 49144774 49144884 -52728285 - MLT1E1 LTR MaLR -1 653 544 1660 186 48 36 chr13 49144884 49145217 -52727952 - MER1B DNA MER1_type 0 337 1 2353 262 21 29 chr13 49145217 49145650 -52727519 - MLT1E1 LTR MaLR -110 544 113 1607 137 96 60 chr13 49145650 49146014 -52727155 + MER51B LTR ERV1 1 377 0 2353 262 21 29 chr13 49146014 49146125 -52727044 - MLT1E1 LTR MaLR -541 113 3 264 170 85 53 chr13 49146460 49146554 -52726615 - MER51D LTR ERV1 -44 613 517 389 352 17 17 chr13 49147448 49147624 -52725545 + MER5B DNA MER1_type 2 177 -1 3169 264 53 56 chr13 49147658 49148085 -52725084 - L1M4 LINE L1 -1306 4840 4413 299 64 0 21 chr13 49148085 49148132 -52725037 + (TA)n Simple_repeat Simple_repeat 1 46 0 3169 264 53 56 chr13 49148132 49149269 -52723900 - L1M4 LINE L1 -1733 4413 3281 2037 136 0 0 chr13 49149498 49149793 -52723376 + AluSx SINE Alu 1 295 -17 2310 92 0 3 chr13 49149803 49150106 -52723063 + AluY SINE Alu 6 307 -4 1832 102 4 8 chr13 49150928 49151183 -52721986 - AluSc SINE Alu -55 254 1 180 158 0 0 chr13 49152838 49152876 -52720293 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 300 298 0 43 chr13 49153241 49153335 -52719834 + MER5A DNA MER1_type 13 102 -87 2371 78 0 10 chr13 49153480 49153786 -52719383 - AluY SINE Alu -8 303 1 221 246 36 82 chr13 49153786 49153896 -52719273 - MIR SINE MIR -21 241 137 411 306 159 6 chr13 49154875 49155032 -52718137 + MER5A DNA MER1_type 9 189 0 26 0 0 0 chr13 49155101 49155127 -52718042 + AT_rich Low_complexity Low_complexity 1 26 0 1404 300 56 31 chr13 49155419 49155933 -52717236 + L1M4b LINE L1 -574 4294967248 -6332 1445 266 43 24 chr13 49156023 49156753 -52716416 + L1M4b LINE L1 1263 2144 -4419 331 275 50 88 chr13 49156760 49156878 -52716291 + L1MEc LINE L1 1735 1841 -4555 2051 134 3 13 chr13 49156878 49157184 -52715985 - AluSq SINE Alu -10 303 1 331 275 50 88 chr13 49157184 49157305 -52715864 + L1MEc LINE L1 1841 1965 -4431 1666 203 37 6 chr13 49157340 49157665 -52715504 + MER2 DNA MER2_type 2 336 -9 547 269 72 32 chr13 49157734 49158194 -52714975 + L1MEc LINE L1 1944 2426 -3789 1745 157 16 9 chr13 49158261 49158580 -52714589 - L1PA16 LINE L1 -2 6164 5844 22 35 0 0 chr13 49159223 49159252 -52713917 + AT_rich Low_complexity Low_complexity 1 29 0 5055 156 20 7 chr13 49159311 49160198 -52712971 - L1PA15 LINE L1 -4 6161 5263 3740 224 15 9 chr13 49160196 49161259 -52711910 - L1PA12 LINE L1 -3734 3063 1994 * 1490 218 3 3 chr13 49161261 49161569 -52711600 - L1PA12 LINE L1 -4945 1842 1535 855 317 5 0 chr13 49161566 49161790 -52711379 - L1PA12 LINE L1 -6562 225 1 * 28 29 0 0 chr13 49161938 49161973 -52711196 + AT_rich Low_complexity Low_complexity 1 35 0 1628 186 0 16 chr13 49161980 49162292 -52710877 - L1PA15 LINE L1 0 6165 5859 857 256 96 83 chr13 49162554 49163085 -52710084 - MLT1F LTR MaLR -4 538 1 356 326 70 93 chr13 49163107 49163732 -52709437 + L2 LINE L2 1606 2216 -1098 1948 178 37 28 chr13 49164034 49164389 -52708780 + THE1B LTR MaLR 7 364 0 11108 101 4 33 chr13 49164389 49166017 -52707152 + THE1B-int LTR MaLR 1 1580 0 1932 167 30 35 chr13 49166017 49166383 -52706786 + THE1B LTR MaLR 1 364 0 315 351 29 50 chr13 49166475 49166717 -52706452 + L2 LINE L2 2681 2917 -397 249 33 0 0 chr13 49166964 49166994 -52706175 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1858 158 0 0 chr13 49167000 49167278 -52705891 - AluSq SINE Alu -35 278 1 21 0 0 0 chr13 49168472 49168493 -52704676 + AT_rich Low_complexity Low_complexity 1 21 0 286 350 57 21 chr13 49168579 49168719 -52704450 + L2 LINE L2 3128 3272 0 342 348 6 50 chr13 49169490 49169651 -52703518 - MIR SINE MIR -108 154 1 529 360 59 4 chr13 49169933 49170186 -52702983 + MLT2F LTR ERVL 1 267 -396 600 288 68 5 chr13 49170320 49170525 -52702644 + MLT2F LTR ERVL 446 663 0 408 259 7 0 chr13 49170651 49170786 -52702383 + L1MC5 LINE L1 7107 7242 -719 537 163 31 0 chr13 49170892 49170990 -52702179 - MLT1A1 LTR MaLR -4 361 261 361 185 11 22 chr13 49171074 49171166 -52702003 - L1PA14 LINE L1 -2 6159 6069 26 50 0 0 chr13 49171784 49171824 -52701345 + AT_rich Low_complexity Low_complexity 1 40 0 292 254 56 0 chr13 49171866 49171937 -52701232 + MLT1F LTR MaLR 1 75 -467 227 271 17 0 chr13 49171978 49172037 -52701132 + MLT1F LTR MaLR 100 159 -408 976 200 59 41 chr13 49172093 49172313 -52700856 + LTR69 LTR ERVL 359 582 -6 314 268 9 62 chr13 49172356 49172468 -52700701 + MLT1J1 LTR MaLR 1 106 -340 416 277 35 125 chr13 49172530 49172786 -52700383 + MLT1H1 LTR MaLR 14 246 -309 262 335 65 32 chr13 49173027 49173212 -52699957 + MLT1J2 LTR MaLR 260 450 0 24 0 0 0 chr13 49173423 49173447 -52699722 + AT_rich Low_complexity Low_complexity 1 24 0 2354 88 0 0 chr13 49173792 49174086 -52699083 - AluY SINE Alu -17 294 1 217 327 56 37 chr13 49174258 49174420 -52698749 - L3 LINE CR1 -891 686 522 225 0 0 0 chr13 49176002 49176027 -52697142 + (TG)n Simple_repeat Simple_repeat 1 25 0 380 248 39 12 chr13 49176492 49176744 -52696425 - L1ME2 LINE L1 0 6166 5866 185 304 101 0 chr13 49176767 49176836 -52696333 + MIR SINE MIR 183 258 -4 215 170 21 0 chr13 49177115 49177162 -52696007 + GA-rich Low_complexity Low_complexity 4 51 0 24 0 0 0 chr13 49178361 49178385 -52694784 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 49179581 49179605 -52693564 + AT_rich Low_complexity Low_complexity 1 24 0 186 382 43 19 chr13 49180837 49181044 -52692125 - L2 LINE L2 0 3313 3102 443 305 76 43 chr13 49181097 49181137 -52692032 + MIR SINE MIR 10 47 -215 1037 208 62 4 chr13 49181137 49181397 -52691772 - ORSL DNA AcHobo 0 275 1 443 305 76 43 chr13 49181397 49181566 -52691603 + MIR SINE MIR 47 226 -36 2235 120 3 0 chr13 49182757 49183065 -52690104 + AluSq SINE Alu 1 309 -4 180 0 0 0 chr13 49183097 49183117 -52690052 + (CATA)n Simple_repeat Simple_repeat 1 20 0 3394 130 10 0 chr13 49183614 49184123 -52689046 - MER75 DNA T2_type 0 514 1 857 134 104 30 chr13 49184322 49184486 -52688683 - MER4D LTR ERV1 0 903 728 922 231 11 31 chr13 49184569 49184829 -52688340 - MER4D LTR ERV1 -175 728 474 * 1250 177 38 30 chr13 49184820 49185086 -52688083 - MER4D LTR ERV1 -635 268 1 207 271 29 14 chr13 49185317 49185376 -52687793 - MER5B DNA MER1_type -83 95 36 190 149 15 134 chr13 49185376 49185443 -52687726 - MER5A DNA MER1_type -3 186 128 345 240 52 71 chr13 49185768 49185922 -52687247 + LTR40a LTR ERVL 1 151 -368 683 314 42 45 chr13 49186029 49186366 -52686803 + LTR40a LTR ERVL 179 514 -5 22 35 0 0 chr13 49186426 49186455 -52686714 + AT_rich Low_complexity Low_complexity 1 29 0 511 295 53 20 chr13 49186468 49186712 -52686457 + L1MEc LINE L1 142 393 -6003 399 21 0 0 chr13 49186712 49186760 -52686409 + (TG)n Simple_repeat Simple_repeat 2 49 0 1564 255 113 27 chr13 49186798 49187622 -52685547 + L1MEc LINE L1 484 1185 -5030 314 388 38 0 chr13 49187738 49187898 -52685271 - MIR SINE MIR -26 236 71 552 100 0 0 chr13 49188077 49188157 -52685012 - MADE1 DNA Mariner 0 80 1 214 340 32 21 chr13 49188288 49188382 -52684787 - MIR SINE MIR -76 132 38 22 35 0 0 chr13 49188391 49188420 -52684749 + AT_rich Low_complexity Low_complexity 1 29 0 200 264 19 0 chr13 49189200 49189253 -52683916 + (TA)n Simple_repeat Simple_repeat 2 55 0 1380 75 0 21 chr13 49189772 49189958 -52683211 - AluY SINE Alu -13 298 117 182 348 34 0 chr13 49190164 49190282 -52682887 + L2 LINE L2 2862 2983 -289 1129 36 0 0 chr13 49190353 49190493 -52682676 - L1PA5 LINE L1 0 6154 6015 984 82 0 0 chr13 49190493 49190615 -52682554 - AluY SINE Alu -189 122 1 661 283 60 85 chr13 49192144 49192829 -52680340 + L2 LINE L2 2580 3249 -64 24 0 0 0 chr13 49192845 49192869 -52680300 + AT_rich Low_complexity Low_complexity 1 24 0 2076 119 3 0 chr13 49193176 49193471 -52679698 + AluSx SINE Alu 1 296 -16 333 0 0 0 chr13 49193513 49193550 -52679619 + (CA)n Simple_repeat Simple_repeat 2 38 0 243 266 53 9 chr13 49193550 49193663 -52679506 + L1 LINE L1 2705 2822 -3324 284 261 225 0 chr13 49193665 49193776 -52679393 + MER34 LTR ERV1 5 140 -402 798 211 51 24 chr13 49193818 49194080 -52679089 + LTR48 LTR ERV1 380 629 -15 242 273 164 18 chr13 49194628 49194738 -52678431 + MIR SINE MIR 99 224 -38 329 134 10 31 chr13 49196178 49196275 -52676894 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 1220 213 7 46 chr13 49196719 49197024 -52676145 - AluJo SINE Alu -9 293 1 2131 178 0 0 chr13 49197999 49198381 -52674788 - L1 LINE L1 -1937 4209 3828 * 5053 197 13 8 chr13 49198372 49198582 -52674587 + L1 LINE L1 4190 4397 -1754 198 0 0 0 chr13 49198582 49198604 -52674565 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 5053 197 13 8 chr13 49198604 49199071 -52674098 + L1 LINE L1 4397 4860 -1291 246 32 0 0 chr13 49199071 49199102 -52674067 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5053 197 13 8 chr13 49199102 49199656 -52673513 + L1 LINE L1 4860 5428 -723 810 313 65 45 chr13 49199703 49200256 -52672913 + L1ME LINE L1 2738 3301 -2845 2036 135 0 7 chr13 49200429 49200732 -52672437 - AluSx SINE Alu -11 301 1 379 289 115 36 chr13 49200952 49201449 -52671720 + L1ME LINE L1 3829 4360 -1786 23 33 0 0 chr13 49201696 49201726 -52671443 + AT_rich Low_complexity Low_complexity 1 30 0 340 314 20 56 chr13 49202427 49202730 -52670439 + L1ME LINE L1 5335 5626 -544 27 0 0 0 chr13 49203025 49203052 -52670117 + AT_rich Low_complexity Low_complexity 1 27 0 1360 273 85 37 chr13 49203643 49204287 -52668882 - MLT1E2 LTR MaLR -2 624 1 303 146 0 0 chr13 49204407 49204462 -52668707 + (TA)n Simple_repeat Simple_repeat 2 56 0 785 253 63 63 chr13 49204463 49204763 -52668406 - MLT1A1 LTR MaLR -65 300 1 657 290 114 71 chr13 49204777 49205170 -52667999 - MLT1A1-int LTR MaLR -85 1286 877 2133 73 0 14 chr13 49205205 49205480 -52667689 - AluY SINE Alu -3 308 38 297 211 26 0 chr13 49205537 49205613 -52667556 - MLT1A1-int LTR MaLR -488 883 806 821 267 26 61 chr13 49205828 49206139 -52667030 - MLT1A1-int LTR MaLR -707 664 365 497 271 23 0 chr13 49206147 49206280 -52666889 - MLT1A1-int LTR MaLR -1178 193 58 22 56 0 0 chr13 49206667 49206703 -52666466 + AT_rich Low_complexity Low_complexity 1 36 0 238 143 18 89 chr13 49206841 49206897 -52666272 - HAL1 LINE L1 -622 1885 1834 227 218 18 18 chr13 49206985 49207040 -52666129 - MLT1-int LTR MaLR -515 856 802 623 310 53 7 chr13 49207049 49207082 -52666087 - HAL1 LINE L1 -773 1734 1704 855 239 106 58 chr13 49207082 49207458 -52665711 + MSTD LTR MaLR 1 394 -2 623 310 53 7 chr13 49207458 49207705 -52665464 - HAL1 LINE L1 -803 1704 1441 258 270 112 0 chr13 49209090 49209179 -52663990 - L2 LINE L2 -1 3312 3214 21 36 0 0 chr13 49209241 49209269 -52663900 + AT_rich Low_complexity Low_complexity 1 28 0 202 125 0 25 chr13 49210320 49210360 -52662809 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 964 123 116 0 chr13 49211041 49211228 -52661941 - AluSp SINE Alu 0 313 127 356 345 70 18 chr13 49212096 49212267 -52660902 + MLT1I LTR MaLR 94 273 -136 335 279 67 1 chr13 49212455 49212562 -52660607 - MIR SINE MIR -62 146 44 36845 89 16 10 chr13 49212574 49218671 -52654498 + L1PA6 LINE L1 11 6143 -11 375 358 114 15 chr13 49219568 49219839 -52653330 - L2 LINE L2 -27 3245 2948 251 212 26 97 chr13 49220376 49220489 -52652680 - MLT1J1 LTR MaLR -21 425 321 1295 253 94 2 chr13 49220712 49221115 -52652054 + L1MA7 LINE L1 3579 4018 -2128 679 187 0 8 chr13 49221111 49221245 -52651924 + L1MA7 LINE L1 4873 5005 -1141 * 5216 281 46 34 chr13 49221246 49224366 -52648803 + L1M3b LINE L1 11 2812 -3538 4548 178 46 17 chr13 49224369 49225362 -52647807 + L1MA7 LINE L1 5205 6221 -70 31 26 0 0 chr13 49225362 49225400 -52647769 + AT_rich Low_complexity Low_complexity 1 38 0 29 78 0 0 chr13 49225434 49225498 -52647671 + AT_rich Low_complexity Low_complexity 1 64 0 1702 203 32 5 chr13 49225501 49226182 -52646987 + L1MA9 LINE L1 4993 5782 -509 584 175 52 149 chr13 49226337 49226447 -52646722 + L1MA9 LINE L1 6035 6154 -158 264 100 0 0 chr13 49226447 49226487 -52646682 + (TATTG)n Simple_repeat Simple_repeat 2 41 0 584 175 52 149 chr13 49226487 49226645 -52646524 + L1MA9 LINE L1 6154 6277 -35 372 301 49 16 chr13 49226682 49226805 -52646364 - MLT1J LTR MaLR -315 196 70 2071 130 13 7 chr13 49227180 49227480 -52645689 - AluSx SINE Alu -10 302 1 40 49 0 0 chr13 49229021 49229082 -52644087 + AT_rich Low_complexity Low_complexity 1 61 0 1294 131 9 22 chr13 49229086 49229308 -52643861 - L1PA16 LINE L1 -2 6164 5946 29 70 0 0 chr13 49229962 49230019 -52643150 + AT_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr13 49230158 49230187 -52642982 + AT_rich Low_complexity Low_complexity 1 29 0 327 222 0 24 chr13 49230206 49230332 -52642837 + (TA)n Simple_repeat Simple_repeat 2 124 0 420 353 35 6 chr13 49231180 49231353 -52641816 - MIR SINE MIR -57 205 28 5712 137 47 13 chr13 49231798 49232796 -52640373 - Tigger3b DNA MER2_type 0 1231 200 1239 171 9 0 chr13 49232805 49233033 -52640136 - L1PB4 LINE L1 -2 6154 5925 1704 186 0 4 chr13 49233038 49233318 -52639851 - AluJb SINE Alu -33 279 1 515 137 94 0 chr13 49233318 49233435 -52639734 - L1PB4 LINE L1 -766 5390 5263 1218 185 0 19 chr13 49233438 49233649 -52639520 - Tigger3b DNA MER2_type -1020 211 5 2562 172 31 75 chr13 49233744 49233945 -52639224 - LTR9 LTR ERV1 0 612 404 2572 46 0 3 chr13 49233945 49234252 -52638917 - AluY SINE Alu -5 306 1 2562 172 31 75 chr13 49234252 49234688 -52638481 - LTR9 LTR ERV1 -208 404 3 205 294 35 24 chr13 49235106 49235191 -52637978 - L2 LINE L2 -1 3312 3227 358 316 7 5 chr13 49235313 49235465 -52637704 + L1ME2 LINE L1 5973 6125 -41 22 35 0 0 chr13 49235529 49235558 -52637611 + AT_rich Low_complexity Low_complexity 1 29 0 4000 166 11 21 chr13 49236972 49237690 -52635479 - MER50 LTR ERV1 -23 711 1 21163 100 6 11 chr13 49237750 49241703 -52631466 - L1PA7 LINE L1 -5 6149 2212 8201 121 22 36 chr13 49241704 49243311 -52629858 - L1PA7 LINE L1 -4660 1486 8 316 275 50 39 chr13 49243969 49244151 -52629018 - MER41B LTR ERV1 -194 441 258 424 322 118 0 chr13 49244355 49244507 -52628662 - MIR SINE MIR -81 181 12 26 0 0 0 chr13 49245385 49245411 -52627758 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr13 49245846 49245906 -52627263 + AT_rich Low_complexity Low_complexity 1 60 0 243 0 0 0 chr13 49246708 49246735 -52626434 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 631 229 55 32 chr13 49247790 49248008 -52625161 + L1MB8 LINE L1 5955 6177 -1 5143 153 19 3 chr13 49249490 49250482 -52622687 + L1PA16 LINE L1 5152 6157 -9 279 387 60 30 chr13 49253780 49253979 -52619190 - MIR SINE MIR -49 213 9 632 335 50 23 chr13 49254966 49255309 -52617860 - L3 LINE CR1 -424 1153 802 250 237 8 61 chr13 49256686 49256817 -52616352 - MER53 DNA DNA -65 124 1 232 235 15 15 chr13 49257046 49257114 -52616055 + (TA)n Simple_repeat Simple_repeat 1 68 0 1771 193 34 12 chr13 49257293 49257703 -52615466 - L1MA9 LINE L1 -5 6307 5889 3132 217 106 6 chr13 49257706 49258508 -52614661 - L1MA6 LINE L1 -12 6288 5407 968 160 64 0 chr13 49258504 49258692 -52614477 - L1MA9 LINE L1 -117 6195 5996 * 3994 201 14 50 chr13 49258697 49259780 -52613389 - L1MA6 LINE L1 -743 5403 4360 3600 84 8 10 chr13 49259799 49260299 -52612870 - L1PA8A LINE L1 -5 6126 5628 207 91 23 45 chr13 49260557 49260601 -52612568 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 423 248 78 46 chr13 49260943 49261161 -52612008 + MER112 DNA MER1_type 30 254 -6 2065 189 44 0 chr13 49261464 49261872 -52611297 - MSTB LTR MaLR 0 426 1 270 193 18 0 chr13 49261894 49261951 -52611218 - MLT1A2 LTR MaLR 0 374 317 4767 221 50 23 chr13 49261953 49263393 -52609776 + L1MC2 LINE L1 3835 5313 -833 3103 227 69 17 chr13 49263434 49264306 -52608863 + L1MC2 LINE L1 5283 6199 -145 438 219 128 6 chr13 49264744 49264908 -52608261 + MER53 DNA DNA 5 188 -1 2585 169 6 2 chr13 49266003 49266493 -52606676 + L1 LINE L1 4513 5004 -1142 * 7543 126 31 8 chr13 49266491 49267316 -52605853 + L1PA15 LINE L1 4119 4924 -1241 6257 60 12 0 chr13 49267316 49268116 -52605053 + L1PA6 LINE L1 5343 6153 -1 7543 126 31 8 chr13 49268116 49269295 -52603874 + L1PA15 LINE L1 4924 6165 0 686 235 25 25 chr13 49271469 49271665 -52601504 - Charlie1 DNA MER1_type -999 1762 1567 5296 153 46 16 chr13 49271667 49272551 -52600618 - Tigger3b DNA MER2_type -1817 1211 240 2308 94 0 0 chr13 49272551 49272849 -52600320 + AluY SINE Alu 1 298 -13 5296 153 46 16 chr13 49272849 49273095 -52600074 - Tigger3b DNA MER2_type -2788 240 3 566 260 21 21 chr13 49273801 49274020 -52599149 - MER106B DNA MER1_type -1 1058 17 964 222 45 33 chr13 49274047 49274381 -52598788 - Charlie1 DNA MER1_type 0 2761 2424 41 78 0 0 chr13 49274859 49274949 -52598220 + AT_rich Low_complexity Low_complexity 1 90 0 952 160 67 9 chr13 49276621 49276846 -52596323 - L1MA7 LINE L1 -1 6290 6053 339 365 16 0 chr13 49276873 49276999 -52596170 + MIR SINE MIR 20 147 -115 21332 107 10 16 chr13 49277439 49280656 -52592513 - L1P LINE L1 -2937 3209 11 26 30 0 0 chr13 49281015 49281048 -52592121 + AT_rich Low_complexity Low_complexity 1 33 0 2267 180 77 11 chr13 49281213 49281691 -52591478 - MER67D LTR ERV1 -3 511 2 603 270 78 50 chr13 49281850 49282350 -52590819 - L1MEd LINE L1 -3139 2990 2477 2186 185 53 21 chr13 49282374 49282910 -52590259 - LTR49 LTR ERV1 -1 594 109 24 53 0 0 chr13 49282958 49282996 -52590173 + AT_rich Low_complexity Low_complexity 1 38 0 1968 197 23 13 chr13 49283041 49283129 -52590040 - MER57A LTR ERV1 -2 401 315 1272 209 118 77 chr13 49283129 49283716 -52589453 - LTR36 LTR ERV1 0 611 1 1968 197 23 13 chr13 49283716 49284017 -52589152 - MER57A LTR ERV1 -88 315 8 21 0 0 0 chr13 49284180 49284201 -52588968 + AT_rich Low_complexity Low_complexity 1 21 0 325 180 115 0 chr13 49284706 49284767 -52588402 + MER5A DNA MER1_type 3 70 -119 587 297 48 93 chr13 49284777 49285383 -52587786 - L1MEd LINE L1 -4864 1255 711 291 71 0 0 chr13 49285642 49285684 -52587485 + (TA)n Simple_repeat Simple_repeat 1 42 0 22 56 0 0 chr13 49286053 49286089 -52587080 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr13 49286164 49286195 -52586974 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr13 49287536 49287564 -52585605 + AT_rich Low_complexity Low_complexity 1 28 0 1559 213 33 0 chr13 49287879 49288241 -52584928 + L1M4 LINE L1 2720 3093 -3053 356 324 0 7 chr13 49289384 49289529 -52583640 - L1M4 LINE L1 -1268 4878 4735 263 253 25 13 chr13 49289535 49289614 -52583555 + L1M4 LINE L1 3777 3856 -2290 620 219 8 0 chr13 49289618 49289741 -52583428 + FLAM_A SINE Alu 4 127 -6 1072 265 27 43 chr13 49289758 49290200 -52582969 + L1M4 LINE L1 3842 4276 -1870 16648 187 40 42 chr13 49290799 49296675 -52576494 - L1PA13 LINE L1 -8 6806 927 3594 231 17 4 chr13 49296767 49297487 -52575682 - L1PA13 LINE L1 -6040 747 19 337 320 52 0 chr13 49297624 49297796 -52575373 - L1ME LINE L1 -433 5737 5557 584 311 62 38 chr13 49297930 49298970 -52574199 - L1ME LINE L1 -762 5384 4320 236 278 29 110 chr13 49299387 49299560 -52573609 - MLT1-int LTR MaLR -184 1187 1029 4745 159 14 15 chr13 49299721 49300588 -52572581 - L1PA16 LINE L1 -9 6157 5298 226 310 35 17 chr13 49301090 49301206 -52571963 - MLT1-int LTR MaLR -835 536 419 1926 154 73 14 chr13 49301512 49301856 -52571313 - THE1B LTR MaLR 0 364 1 9196 112 7 2 chr13 49301856 49303427 -52569742 - THE1B-int LTR MaLR 0 1580 1 2237 136 34 6 chr13 49303427 49303781 -52569388 - THE1B LTR MaLR 0 364 1 1163 270 77 22 chr13 49303792 49304244 -52568925 + Charlie1 DNA MER1_type 2 478 -2283 29 70 0 0 chr13 49304244 49304301 -52568868 + AT_rich Low_complexity Low_complexity 1 57 0 306 137 89 40 chr13 49304396 49304520 -52568649 + (TTTAA)n Simple_repeat Simple_repeat 5 134 0 308 365 45 6 chr13 49305381 49305537 -52567632 + L2 LINE L2 2543 2704 -610 534 324 50 58 chr13 49305671 49306014 -52567155 - MLT1J LTR MaLR -78 433 94 25 0 0 0 chr13 49306406 49306431 -52566738 + AT_rich Low_complexity Low_complexity 1 25 0 30 59 0 0 chr13 49306890 49306941 -52566228 + AT_rich Low_complexity Low_complexity 1 51 0 239 0 0 31 chr13 49307073 49307105 -52566064 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 979 27 0 0 chr13 49307105 49307217 -52565952 - L1PA5 LINE L1 -22 6132 6021 * 6102 51 1 6 chr13 49307216 49308368 -52564801 + L1PA6 LINE L1 4879 6025 -129 1563 174 7 3 chr13 49309122 49309409 -52563760 + L1M2 LINE L1 5445 5732 -559 2147 94 28 0 chr13 49309816 49310102 -52563067 + AluSq SINE Alu 1 294 -19 1395 224 40 16 chr13 49310112 49310433 -52562736 + MER2 DNA MER2_type 1 329 -16 203 250 238 0 chr13 49310672 49310752 -52562417 + MIR SINE MIR 89 187 -75 43 20 0 0 chr13 49310868 49310918 -52562251 + AT_rich Low_complexity Low_complexity 1 50 0 230 266 0 0 chr13 49311719 49311783 -52561386 - L1ME LINE L1 -5944 126 63 28 0 0 0 chr13 49311860 49311888 -52561281 + AT_rich Low_complexity Low_complexity 1 28 0 2612 32 3 3 chr13 49311889 49312198 -52560971 + AluSx SINE Alu 1 309 -3 515 369 100 35 chr13 49312386 49313248 -52559921 + L2 LINE L2 1944 2861 -453 251 311 98 16 chr13 49313504 49313626 -52559543 + L2 LINE L2 3142 3273 -40 738 259 127 9 chr13 49314112 49314332 -52558837 + MIR SINE MIR 10 255 -7 334 295 36 27 chr13 49314371 49314483 -52558686 - MIR SINE MIR -105 157 45 1626 191 10 13 chr13 49314609 49314912 -52558257 + AluJo SINE Alu 1 302 -10 337 273 90 39 chr13 49314919 49315175 -52557994 - L1MC5 LINE L1 -80 7881 7613 25 90 0 0 chr13 49315322 49315389 -52557780 + AT_rich Low_complexity Low_complexity 1 67 0 377 225 92 0 chr13 49316441 49316561 -52556608 - L1M4 LINE L1 -3756 2888 2758 370 265 42 70 chr13 49316558 49316773 -52556396 - L1M4 LINE L1 -4227 2419 2211 * 1472 246 37 70 chr13 49317015 49317604 -52555565 - L1M4 LINE L1 -4706 1940 1371 1296 153 0 5 chr13 49317624 49317839 -52555330 + AluSg/x SINE Alu 84 297 -12 4487 254 48 18 chr13 49317844 49319144 -52554025 - L1M4 LINE L1 -5203 1339 1 442 327 142 5 chr13 49319852 49320063 -52553106 - MIR SINE MIR -11 251 12 301 316 97 13 chr13 49320103 49320258 -52552911 + MIR SINE MIR 52 219 -43 488 319 55 4 chr13 49320561 49320799 -52552370 + MER110 LTR ERV1 194 443 -48 591 314 105 51 chr13 49320898 49321715 -52551454 - L2 LINE L2 -3 3310 2450 917 120 0 0 chr13 49321827 49321952 -52551217 + AluSq/x SINE Alu 1 125 -188 2520 221 81 2 chr13 49322277 49322892 -52550277 - L1MB2 LINE L1 -4 6167 5504 242 314 43 0 chr13 49322909 49322979 -52550190 - MIR SINE MIR -157 105 33 650 370 32 11 chr13 49323042 49323418 -52549751 - MLT1J1 LTR MaLR 0 446 63 180 111 0 0 chr13 49324689 49324716 -52548453 + (CATA)n Simple_repeat Simple_repeat 1 27 0 238 206 44 0 chr13 49324830 49324898 -52548271 + (TA)n Simple_repeat Simple_repeat 1 71 0 7461 257 29 31 chr13 49326007 49326282 -52546887 + L1M4c LINE L1 2174 2448 -3934 2389 58 3 0 chr13 49326282 49326573 -52546596 + AluY SINE Alu 3 294 -17 7461 257 29 31 chr13 49326573 49329175 -52543994 + L1M4c LINE L1 2448 5045 -1337 2334 94 0 0 chr13 49330441 49330738 -52542431 + AluSx SINE Alu 1 297 -15 202 167 52 31 chr13 49330741 49330837 -52542332 + (TA)n Simple_repeat Simple_repeat 2 99 0 200 171 34 11 chr13 49330856 49330944 -52542225 + (TA)n Simple_repeat Simple_repeat 1 90 0 389 340 52 54 chr13 49333574 49334091 -52539078 + L1ME LINE L1 17 532 -5538 287 315 66 33 chr13 49334225 49334540 -52538629 + L1ME LINE L1 530 833 -5237 2009 123 3 0 chr13 49334540 49334825 -52538344 + AluSx SINE Alu 1 286 -26 218 31 0 31 chr13 49334826 49334858 -52538311 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 287 315 66 33 chr13 49334858 49334997 -52538172 + L1ME LINE L1 832 1001 -5069 604 263 111 11 chr13 49335831 49336021 -52537148 - MER82 DNA MER2_type -1 652 444 269 297 65 32 chr13 49336054 49336209 -52536960 + MIR SINE MIR 3 162 -100 1654 106 24 0 chr13 49337349 49337603 -52535566 - L1PA13 LINE L1 -3 6160 5901 3571 120 8 0 chr13 49337608 49338133 -52535036 + L1PA13 LINE L1 5388 5916 -252 686 263 33 14 chr13 49338914 49339127 -52534042 - L1ME1 LINE L1 -5 6161 5945 35 107 0 0 chr13 49340169 49340309 -52532860 + AT_rich Low_complexity Low_complexity 1 140 0 21 36 0 0 chr13 49340508 49340536 -52532633 + AT_rich Low_complexity Low_complexity 1 28 0 285 331 33 43 chr13 49342145 49342329 -52530840 + L2 LINE L2 3113 3294 -19 2020 122 3 0 chr13 49342421 49342708 -52530461 - AluSg SINE Alu -6 304 17 314 331 34 51 chr13 49342745 49342923 -52530246 + MLT1J LTR MaLR 1 175 -336 235 267 0 27 chr13 49343006 49343081 -52530088 + MLT1J1 LTR MaLR 250 322 -124 315 311 149 80 chr13 49343209 49343835 -52529334 + L2 LINE L2 1313 1981 -1333 1007 266 111 20 chr13 49343839 49344237 -52528932 + MER57B LTR ERV1 1 434 0 198 222 0 0 chr13 49344285 49344339 -52528830 + (TA)n Simple_repeat Simple_repeat 1 54 0 264 59 0 0 chr13 49344662 49344696 -52528473 + (A)n Simple_repeat Simple_repeat 1 34 0 366 356 67 41 chr13 49344937 49345282 -52527887 - L2 LINE L2 -2873 441 88 25 51 0 0 chr13 49345998 49346037 -52527132 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr13 49346095 49346127 -52527042 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr13 49346632 49346657 -52526512 + AT_rich Low_complexity Low_complexity 1 25 0 685 93 0 113 chr13 49346812 49346963 -52526206 + L1MB2 LINE L1 5985 6118 -53 356 321 95 32 chr13 49347698 49348193 -52524976 - L1M4 LINE L1 -3355 2791 2266 315 49 0 0 chr13 49348529 49348570 -52524599 + (CA)n Simple_repeat Simple_repeat 2 42 0 1567 192 21 7 chr13 49348625 49348916 -52524253 - AluJo SINE Alu -17 295 1 480 287 69 44 chr13 49348955 49349823 -52523346 - L1MDa LINE L1 -2500 4040 3101 347 301 63 25 chr13 49350195 49350481 -52522688 - L1MDa LINE L1 -3580 2960 2664 308 252 59 37 chr13 49350492 49350627 -52522542 - L1MDa LINE L1 -3909 2631 2494 271 308 8 0 chr13 49350652 49350769 -52522400 + (TA)n Simple_repeat Simple_repeat 1 118 0 367 246 37 0 chr13 49350824 49350958 -52522211 - L1MDa LINE L1 -3735 2805 2667 2547 58 0 0 chr13 49351893 49352203 -52520966 + AluY SINE Alu 1 310 -1 21 0 0 0 chr13 49352634 49352655 -52520514 + AT_rich Low_complexity Low_complexity 1 21 0 371 336 71 0 chr13 49353125 49353351 -52519818 - L1MDa LINE L1 -4579 2142 1901 361 317 112 45 chr13 49353596 49354015 -52519154 - L1MDa LINE L1 -4939 1591 1145 28 29 0 0 chr13 49354694 49354729 -52518440 + AT_rich Low_complexity Low_complexity 1 35 0 2155 89 0 4 chr13 49354801 49355081 -52518088 + AluY SINE Alu 1 279 -32 180 97 0 0 chr13 49355082 49355113 -52518056 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 239 336 107 20 chr13 49355668 49355817 -52517352 + L2 LINE L2 998 1159 -2155 1618 240 29 19 chr13 49355830 49356259 -52516910 - MLT2C2 LTR ERVL -31 414 1 531 216 15 8 chr13 49356506 49356640 -52516529 + MLT2B2 LTR ERVL 1 135 -380 1865 106 69 0 chr13 49356754 49357029 -52516140 + AluSg SINE Alu 1 294 -16 369 83 28 14 chr13 49357029 49357101 -52516068 + (TA)n Simple_repeat Simple_repeat 2 74 0 611 209 19 127 chr13 49357103 49357413 -52515756 + MLT2B1 LTR ERVL 147 512 -8 25 0 0 0 chr13 49357472 49357497 -52515672 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 49357529 49357552 -52515617 + AT_rich Low_complexity Low_complexity 1 23 0 15340 69 1 0 chr13 49358917 49361758 -52511411 + L1PA5 LINE L1 3301 6149 -5 25 51 0 0 chr13 49361961 49362000 -52511169 + AT_rich Low_complexity Low_complexity 1 39 0 242 417 62 14 chr13 49362642 49362786 -52510383 - L2 LINE L2 -18 3254 3104 26 30 0 0 chr13 49365933 49365966 -52507203 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr13 49366327 49366354 -52506815 + AT_rich Low_complexity Low_complexity 1 27 0 245 237 118 0 chr13 49367511 49367587 -52505582 + L1ME LINE L1 5724 5808 -354 510 17 0 0 chr13 49367732 49367791 -52505378 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 312 27 0 0 chr13 49367903 49367940 -52505229 + (TA)n Simple_repeat Simple_repeat 1 37 0 205 309 154 11 chr13 49368055 49368243 -52504926 + L2 LINE L2 3041 3255 -58 310 338 13 48 chr13 49368363 49368591 -52504578 - L2 LINE L2 -1214 2100 1881 227 196 54 0 chr13 49369005 49369061 -52504108 - L1ME3A LINE L1 -74 6096 6038 307 219 299 6 chr13 49369382 49369546 -52503623 + MER106A DNA MER1_type 18 229 -7 344 326 98 40 chr13 49369571 49369795 -52503374 + HAL1 LINE L1 1727 1963 -544 431 313 47 60 chr13 49369870 49370170 -52502999 + HAL1b LINE L1 558 853 -495 32 26 0 0 chr13 49370210 49370249 -52502920 + AT_rich Low_complexity Low_complexity 1 39 0 448 283 78 6 chr13 49370306 49370472 -52502697 + LTR53 LTR ERVL 22 199 -320 2992 43 0 0 chr13 49370472 49370842 -52502327 - L1P LINE L1 -3911 2235 1866 1739 46 0 0 chr13 49370842 49371061 -52502108 + L1PA5 LINE L1 5920 6138 -16 21 0 0 0 chr13 49371061 49371082 -52502087 + AT_rich Low_complexity Low_complexity 1 21 0 552 256 106 33 chr13 49371087 49371267 -52501902 + LTR53 LTR ERVL 190 382 -137 1477 195 0 29 chr13 49371607 49371914 -52501255 - AluJb SINE Alu -14 298 1 2047 80 0 0 chr13 49373016 49373290 -52499879 + L1P5 LINE L1 5396 5669 -482 1717 274 53 46 chr13 49373607 49374132 -52499037 - L1ME1 LINE L1 0 6166 5633 2338 75 10 0 chr13 49374132 49374425 -52498744 + AluSp SINE Alu 5 300 -13 1717 274 53 46 chr13 49374425 49374573 -52498596 - L1ME1 LINE L1 -533 5633 5488 846 218 21 11 chr13 49374699 49374887 -52498282 - AluJo SINE Alu -30 282 93 276 350 87 29 chr13 49375037 49375488 -52497681 - HERVL LTR ERVL -3004 2650 2174 189 74 0 0 chr13 49376060 49376087 -52497082 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 298 73 18 18 chr13 49376995 49377050 -52496119 + (TA)n Simple_repeat Simple_repeat 1 55 0 203 175 0 0 chr13 49377416 49377456 -52495713 + T-rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr13 49377665 49377695 -52495474 + AT_rich Low_complexity Low_complexity 1 30 0 261 271 10 10 chr13 49379360 49379456 -52493713 + (TA)n Simple_repeat Simple_repeat 2 97 0 201 328 85 34 chr13 49379551 49379728 -52493441 + MIR SINE MIR 4 189 -73 21 0 0 0 chr13 49379786 49379807 -52493362 + AT_rich Low_complexity Low_complexity 1 21 0 1886 245 25 6 chr13 49381243 49381758 -52491411 - L1MB8 LINE L1 -5 6173 5649 591 260 14 104 chr13 49382401 49382649 -52490520 + L1 LINE L1 4045 4253 -1893 308 24 0 24 chr13 49382649 49382691 -52490478 + (GGGA)n Simple_repeat Simple_repeat 4 44 0 591 260 14 104 chr13 49382691 49382796 -52490373 + L1 LINE L1 4253 4366 -1780 2141 238 38 79 chr13 49382796 49383483 -52489686 - L1MB8 LINE L1 -2073 4073 3360 1097 209 77 74 chr13 49383483 49383847 -52489322 - MLT1A1 LTR MaLR 0 365 1 2141 238 38 79 chr13 49383847 49383897 -52489272 - L1MB8 LINE L1 -2786 3360 3310 1677 148 46 87 chr13 49383897 49384288 -52488881 + THE1C LTR MaLR 1 375 0 2141 238 38 79 chr13 49384288 49384591 -52488578 - L1MB8 LINE L1 -2836 3310 3074 6568 35 0 0 chr13 49384626 49385403 -52487766 - L1PA3 LINE L1 -1 6154 5378 286 360 13 39 chr13 49385607 49385760 -52487409 + MLT1F1-int LTR MaLR 961 1109 -262 1111 275 66 54 chr13 49386092 49386652 -52486517 + MLT1F1 LTR MaLR 4 567 0 1593 157 4 4 chr13 49387243 49387498 -52485671 - AluSg SINE Alu -55 255 1 198 71 0 0 chr13 49387719 49387747 -52485422 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 317 167 0 64 chr13 49388026 49388104 -52485065 - MADE1 DNA Mariner 0 80 8 214 347 24 16 chr13 49388137 49388261 -52484908 - L2 LINE L2 -2269 1045 921 605 367 116 19 chr13 49388703 49389270 -52483899 + L2 LINE L2 246 867 -2447 342 368 23 17 chr13 49389277 49389451 -52483718 + L2 LINE L2 802 976 -2338 7626 218 12 9 chr13 49389970 49391794 -52481375 + L1 LINE L1 3165 4993 -1153 1533 176 42 88 chr13 49391865 49392273 -52480896 - MLT1B LTR MaLR -1 389 1 530 189 11 0 chr13 49392367 49392462 -52480707 - Tigger7 DNA MER2_type 0 2487 2392 1403 235 4 4 chr13 49392465 49392729 -52480440 - Tigger7 DNA MER2_type -468 265 2 25 31 0 0 chr13 49392729 49392761 -52480408 + AT_rich Low_complexity Low_complexity 1 32 0 286 159 63 32 chr13 49392929 49392992 -52480177 - L1MB1 LINE L1 -5 6163 6099 2696 192 20 2 chr13 49392999 49393547 -52479622 - L1MB1 LINE L1 -137 6052 5495 412 281 191 5 chr13 49393548 49393758 -52479411 - L2 LINE L2 -2252 1062 814 495 332 100 28 chr13 49393758 49394047 -52479122 - L2 LINE L2 -2770 544 235 21 57 0 0 chr13 49395235 49395270 -52477899 + AT_rich Low_complexity Low_complexity 1 35 0 1823 213 29 29 chr13 49395638 49396051 -52477118 + MLT2D LTR ERVL 1 413 -1 1774 148 103 15 chr13 49396172 49396511 -52476658 - THE1C LTR MaLR 0 375 7 372 316 34 8 chr13 49396622 49396739 -52476430 + MIR SINE MIR 1 120 -142 491 337 65 8 chr13 49396948 49397209 -52475960 + LTR16A1 LTR ERVL 182 457 0 219 264 174 16 chr13 49397211 49397332 -52475837 + MIR SINE MIR 121 260 -2 1452 204 3 26 chr13 49397568 49397872 -52475297 + AluJo SINE Alu 1 297 -15 189 0 0 0 chr13 49398159 49398180 -52474989 + (TG)n Simple_repeat Simple_repeat 2 22 0 275 280 150 0 chr13 49398278 49398378 -52474791 - L2 LINE L2 -541 2773 2659 732 207 7 7 chr13 49398378 49398523 -52474646 + MER117 DNA MER1_type 1 145 -52 318 310 60 9 chr13 49399068 49399184 -52473985 + MIR SINE MIR 20 141 -121 1839 133 41 7 chr13 49399761 49400055 -52473114 + AluSx SINE Alu 9 312 0 300 292 53 41 chr13 49401571 49401742 -52471427 - L3 LINE CR1 -507 1070 898 2236 188 119 26 chr13 49402527 49403176 -52469993 + MER67C LTR ERV1 1 709 -1 238 247 139 30 chr13 49403698 49403864 -52469305 + LTR50 LTR ERVL 612 795 0 360 336 47 50 chr13 49404154 49404493 -52468676 + HERVL68 LTR ERVL 352 689 -5075 228 35 0 0 chr13 49404562 49404591 -52468578 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr13 49404719 49404743 -52468426 + AT_rich Low_complexity Low_complexity 1 24 0 700 299 63 6 chr13 49404746 49404944 -52468225 + HERVL68 LTR ERVL 2336 2521 -3163 228 67 0 0 chr13 49404944 49404974 -52468195 + (TA)n Simple_repeat Simple_repeat 2 31 0 700 299 63 6 chr13 49404974 49405089 -52468080 + HERVL68 LTR ERVL 2521 2715 -2969 546 274 42 6 chr13 49405248 49405416 -52467753 + MER58B DNA MER1_type 168 341 0 500 360 6 0 chr13 49405572 49405750 -52467419 + HERVL68 LTR ERVL 3020 3198 -2456 362 274 126 7 chr13 49406349 49406484 -52466685 + LTR41 LTR ERVL 3 153 -620 428 392 5 14 chr13 49406485 49406707 -52466462 + HERVL68 LTR ERVL 1132 1351 -4179 403 338 61 18 chr13 49407345 49407573 -52465596 + HERVL68 LTR ERVL 1380 1617 -3913 * 4487 280 82 68 chr13 49407572 49408164 -52465005 + HERVL68 LTR ERVL 2050 2633 -2897 187 224 28 75 chr13 49408164 49408271 -52464898 + MER5C DNA MER1_type 191 292 -32 4487 280 82 68 chr13 49408271 49409942 -52463227 + HERVL68 LTR ERVL 2633 4496 -1034 350 311 45 59 chr13 49410152 49410374 -52462795 + HERVL68 LTR ERVL 2486 2704 -333 764 230 29 0 chr13 49410582 49410756 -52462413 + HERVL68 LTR ERVL 5352 5530 0 1234 285 41 11 chr13 49410759 49411201 -52461968 + LTR40b LTR ERVL 4 458 -4 376 328 86 10 chr13 49411206 49411404 -52461765 + L2 LINE L2 3098 3310 -3 27 0 0 0 chr13 49411711 49411738 -52461431 + AT_rich Low_complexity Low_complexity 1 27 0 1096 148 0 11 chr13 49412294 49412470 -52460699 + AluSg/x SINE Alu 127 300 -10 270 294 34 8 chr13 49412486 49412605 -52460564 + L1M4 LINE L1 4110 4231 -1915 240 302 21 73 chr13 49413055 49413247 -52459922 + L1MEd LINE L1 3 184 -5935 237 65 0 0 chr13 49413461 49413492 -52459677 + (TG)n Simple_repeat Simple_repeat 1 31 0 184 288 39 59 chr13 49415397 49415550 -52457619 + L2 LINE L2 2272 2421 -893 279 0 0 0 chr13 49416301 49416332 -52456837 + (TATG)n Simple_repeat Simple_repeat 2 32 0 232 361 31 21 chr13 49416415 49416512 -52456657 + L2 LINE L2 3174 3271 -1 407 359 116 11 chr13 49418060 49418769 -52454400 + ERVL LTR ERVL 4577 5379 -385 401 340 92 55 chr13 49418996 49419375 -52453794 + LTR33 LTR ERVL 6 398 -123 27 0 0 0 chr13 49419889 49419916 -52453253 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr13 49421240 49421269 -52451900 + AT_rich Low_complexity Low_complexity 1 29 0 2895 207 46 39 chr13 49422018 49422787 -52450382 - L1MA9 LINE L1 -38 6274 5511 2213 97 0 16 chr13 49422787 49423138 -52450031 - AluY SINE Alu 0 311 1 361 298 48 0 chr13 49423138 49423262 -52449907 - FLAM_A SINE Alu -2 131 2 2895 207 46 39 chr13 49423262 49423759 -52449410 - L1MA9 LINE L1 -800 5512 4826 417 309 51 86 chr13 49425216 49425647 -52447522 + L2 LINE L2 2207 2622 -692 216 158 0 0 chr13 49425647 49425685 -52447484 + GA-rich Low_complexity Low_complexity 3 40 0 249 330 4 107 chr13 49425999 49426232 -52446937 + L2 LINE L2 3105 3313 0 25 51 0 0 chr13 49426247 49426286 -52446883 + AT_rich Low_complexity Low_complexity 1 39 0 708 228 94 51 chr13 49428174 49428450 -52444719 - MLT1B LTR MaLR -93 297 10 2577 250 35 7 chr13 49429487 49430191 -52442978 - L1MD2 LINE L1 -9 6350 5627 288 224 17 0 chr13 49432044 49432102 -52441067 + MLT1E1 LTR MaLR 3 61 -593 1305 67 240 0 chr13 49432109 49432317 -52440852 + LTR12 LTR ERV1 1 258 -456 268 333 16 0 chr13 49432317 49432440 -52440729 + LTR30 LTR ERV1 524 648 -74 1247 76 0 0 chr13 49432441 49432599 -52440570 + LTR12 LTR ERV1 486 643 -71 1146 225 100 89 chr13 49432703 49433161 -52440008 + MLT1E1 LTR MaLR 177 639 -15 2257 128 31 17 chr13 49433167 49433526 -52439643 + THE1B LTR MaLR 1 364 0 1340 160 89 73 chr13 49433531 49433724 -52439445 - THE1C LTR MaLR 0 375 172 1985 104 83 7 chr13 49433724 49434013 -52439156 - AluY SINE Alu 0 311 1 1340 160 89 73 chr13 49434013 49434188 -52438981 - THE1C LTR MaLR -203 172 1 25 0 0 0 chr13 49434893 49434918 -52438251 + AT_rich Low_complexity Low_complexity 1 25 0 2149 121 0 0 chr13 49434926 49435231 -52437938 + AluSc SINE Alu 2 306 -3 8744 227 45 28 chr13 49435349 49436336 -52436833 - L1MA9 LINE L1 -13 7320 6352 1021 84 0 0 chr13 49436336 49436479 -52436690 - L1PA4 LINE L1 -6 6149 6007 8744 227 45 28 chr13 49436479 49439131 -52434038 - L1MA9 LINE L1 -981 6352 3620 287 214 0 0 chr13 49439133 49439189 -52433980 - L1MA9 LINE L1 -3644 3523 3468 205 146 21 42 chr13 49439191 49439239 -52433930 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 23 0 0 0 chr13 49439400 49439423 -52433746 + AT_rich Low_complexity Low_complexity 1 23 0 188 35 35 0 chr13 49440645 49440674 -52432495 + (TG)n Simple_repeat Simple_repeat 1 30 0 1448 120 5 0 chr13 49441636 49441836 -52431333 + AluSg/x SINE Alu 77 277 -35 225 0 0 0 chr13 49441837 49441862 -52431307 + (TC)n Simple_repeat Simple_repeat 2 26 0 30 0 0 0 chr13 49441862 49441892 -52431277 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 49442641 49442662 -52430507 + AT_rich Low_complexity Low_complexity 1 21 0 1899 129 48 70 chr13 49443597 49443969 -52429200 + THE1B LTR MaLR 1 364 0 1013 261 59 24 chr13 49444696 49445231 -52427938 + L1M4 LINE L1 2382 2953 -3193 225 65 0 0 chr13 49445232 49445263 -52427906 + (GA)n Simple_repeat Simple_repeat 2 32 0 9150 227 30 29 chr13 49445297 49446556 -52426613 + L1M3f LINE L1 17 1273 -5055 1301 134 91 22 chr13 49446556 49446788 -52426381 + L1PA7 LINE L1 5907 6154 0 9150 227 30 29 chr13 49446788 49450163 -52423006 + L1M3f LINE L1 1273 4624 -1704 1162 217 18 66 chr13 49450264 49450660 -52422509 - L1MA9 LINE L1 -4642 2526 2150 * 32414 116 12 23 chr13 49450658 49455762 -52417407 - L1P LINE L1 -1089 5057 12 3912 299 39 11 chr13 49455762 49457015 -52416154 - L1MA9 LINE L1 -5135 2033 746 1559 208 68 16 chr13 49457186 49457571 -52415598 + L1MA4 LINE L1 5896 6300 0 2021 116 3 0 chr13 49457603 49457895 -52415274 - AluY SINE Alu -18 293 1 2936 186 67 13 chr13 49459348 49459960 -52413209 - ERVL LTR ERVL -1072 4692 4048 2758 290 63 27 chr13 49459985 49462472 -52410697 - L1MCc LINE L1 -2324 4617 1968 926 279 49 19 chr13 49462496 49462844 -52410325 - L1MCc LINE L1 -5708 714 11 793 243 11 16 chr13 49463200 49463385 -52409784 + MER5A DNA MER1_type 1 184 -5 1707 121 8 0 chr13 49463678 49463926 -52409243 - AluY SINE Alu -6 305 56 1774 177 38 70 chr13 49464473 49464919 -52408250 - MSTB1 LTR MaLR 0 432 1 3444 198 73 28 chr13 49465621 49466330 -52406839 - L1MB2 LINE L1 -9 6162 5362 5405 102 4 8 chr13 49466330 49467113 -52406056 - LTR17 LTR ERV1 0 780 1 3444 198 73 28 chr13 49467113 49467604 -52405565 - L1MB2 LINE L1 -809 5362 4895 21 0 0 0 chr13 49471529 49471550 -52401619 + AT_rich Low_complexity Low_complexity 1 21 0 1469 207 14 20 chr13 49472018 49472313 -52400856 + AluJo SINE Alu 1 293 -19 5134 218 45 11 chr13 49472522 49474831 -52398338 - L1MC1 LINE L1 -1 6332 3958 7531 27 6 0 chr13 49474833 49476272 -52396897 - L1PA4 LINE L1 -2 6153 4710 5041 35 0 0 chr13 49476272 49476881 -52396288 + L1P LINE L1 3512 4120 -2026 835 243 75 32 chr13 49477074 49477477 -52395692 - Charlie1 DNA MER1_type -640 2121 1651 1716 186 65 0 chr13 49477477 49477799 -52395370 + MER7A DNA MER2_type 1 341 -5 21 0 0 0 chr13 49478039 49478060 -52395109 + AT_rich Low_complexity Low_complexity 1 21 0 262 257 43 0 chr13 49478236 49478306 -52394863 + LTR16A LTR ERVL 56 128 -322 300 277 101 25 chr13 49478370 49478489 -52394680 + LTR16A LTR ERVL 242 369 -81 23 33 0 0 chr13 49479113 49479143 -52394026 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr13 49479201 49479246 -52393923 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr13 49480509 49480559 -52392610 + AT_rich Low_complexity Low_complexity 1 50 0 220 250 29 0 chr13 49482124 49482192 -52390977 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 358 279 26 6 chr13 49482402 49482557 -52390612 - MER110A LTR ERV1 0 468 340 1482 179 26 62 chr13 49482670 49483010 -52390159 + MLT1A1 LTR MaLR 5 332 -33 1988 97 14 0 chr13 49483010 49483288 -52389881 + AluY SINE Alu 1 282 -29 183 302 19 0 chr13 49484246 49484299 -52388870 - L3 LINE CR1 -459 1118 1065 34 89 0 0 chr13 49486368 49486458 -52386711 + AT_rich Low_complexity Low_complexity 1 90 0 1799 172 30 113 chr13 49486469 49487034 -52386135 + L1MA7 LINE L1 5774 6291 0 1967 112 3 14 chr13 49487100 49487413 -52385756 - AluSx SINE Alu 0 310 1 23 68 0 0 chr13 49487594 49487638 -52385531 + AT_rich Low_complexity Low_complexity 1 44 0 717 313 30 22 chr13 49488069 49488430 -52384739 + L1ME3 LINE L1 3503 3866 -2280 2061 202 39 20 chr13 49488470 49488911 -52384258 + MER74C LTR ERVL 10 458 -2 513 296 45 46 chr13 49488994 49489554 -52383615 - L1M4 LINE L1 -1733 4413 3855 330 306 34 23 chr13 49489647 49489957 -52383212 + L1ME3 LINE L1 5127 5449 -721 510 326 84 30 chr13 49489959 49490293 -52382876 - LTR16B LTR ERVL 0 464 113 1067 292 67 20 chr13 49490387 49490883 -52382286 + L1ME3 LINE L1 5428 5946 -216 388 211 54 75 chr13 49491192 49491339 -52381830 - MIR SINE MIR -28 234 91 26 0 0 0 chr13 49492100 49492126 -52381043 + AT_rich Low_complexity Low_complexity 1 26 0 36 23 0 0 chr13 49492420 49492463 -52380706 + AT_rich Low_complexity Low_complexity 1 43 0 7409 31 7 0 chr13 49493785 49494957 -52378212 - L1PA3 LINE L1 0 6155 4982 223 374 79 0 chr13 49495848 49495987 -52377182 - L2 LINE L2 -2 3270 3121 2006 142 0 3 chr13 49496594 49496903 -52376266 - AluSg SINE Alu -2 308 1 197 280 121 38 chr13 49497164 49497296 -52375873 + MIR SINE MIR 105 247 -15 216 378 37 15 chr13 49497407 49497542 -52375627 + L3 LINE CR1 629 766 -811 274 348 0 0 chr13 49497783 49497901 -52375268 + L1MC/D LINE L1 5722 5839 -1969 537 265 126 14 chr13 49497908 49498123 -52375046 + MIR SINE MIR 3 241 -21 27 49 0 0 chr13 49498573 49498614 -52374555 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 49498659 49498691 -52374478 + AT_rich Low_complexity Low_complexity 1 32 0 31 26 0 0 chr13 49498743 49498781 -52374388 + AT_rich Low_complexity Low_complexity 1 38 0 1941 99 70 0 chr13 49500210 49500494 -52372675 + AluSx SINE Alu 1 304 -8 472 346 66 0 chr13 49501044 49501226 -52371943 - MIR SINE MIR -2 260 67 246 241 129 17 chr13 49501365 49501481 -52371688 - MER103 DNA DNA -5 161 33 1476 177 25 15 chr13 49501679 49502006 -52371163 - L1 LINE L1 -1318 4828 4499 6728 231 18 4 chr13 49502006 49503649 -52369520 + L1 LINE L1 2809 4473 -1673 303 319 78 47 chr13 49554773 49555005 -52318164 - L1MDa LINE L1 -3934 2281 2043 382 317 72 32 chr13 49555050 49555299 -52317870 - L1MDa LINE L1 -4375 2021 1763 244 326 41 0 chr13 49555329 49555427 -52317742 + MER91C DNA MER1_type 33 134 -6 21 0 0 0 chr13 49556802 49556823 -52316346 + AT_rich Low_complexity Low_complexity 1 21 0 621 156 90 0 chr13 49556895 49556977 -52316192 + L1MB4 LINE L1 12 110 -7455 399 41 0 0 chr13 49556977 49557026 -52316143 + (CA)n Simple_repeat Simple_repeat 2 50 0 621 156 90 0 chr13 49557026 49557065 -52316104 + L1MB4 LINE L1 110 144 -7421 229 186 0 0 chr13 49557051 49557094 -52316075 + L1M1 LINE L1 1099 1141 -6424 * 3829 221 4 7 chr13 49557095 49557841 -52315328 + L1MB4 LINE L1 331 1074 -6491 3962 216 77 8 chr13 49557941 49559049 -52314120 + L1MB4 LINE L1 4015 5198 -2367 4262 177 62 7 chr13 49559057 49559240 -52313929 - Tigger1 DNA MER2_type -1422 996 825 180 0 0 0 chr13 49559240 49559260 -52313909 + (TA)n Simple_repeat Simple_repeat 2 21 0 4262 177 62 7 chr13 49559260 49559925 -52313244 - Tigger1 DNA MER2_type -1593 825 101 1351 177 17 34 chr13 49560152 49560282 -52312887 - LTR60 LTR ERV1 -2 584 453 1136 158 148 141 chr13 49560282 49560552 -52312617 - MSTA LTR MaLR 0 428 152 1931 157 3 0 chr13 49560552 49560857 -52312312 + AluSx SINE Alu 3 308 -4 1136 158 148 141 chr13 49560857 49561011 -52312158 - MSTA LTR MaLR -276 152 1 1351 177 17 34 chr13 49561011 49561174 -52311995 - LTR60 LTR ERV1 -133 453 296 558 186 0 0 chr13 49561177 49561279 -52311890 - LTR60 LTR ERV1 -484 102 1 522 216 10 0 chr13 49561279 49561378 -52311791 - Tigger1 DNA MER2_type -2318 100 1 22 35 0 0 chr13 49561430 49561459 -52311710 + AT_rich Low_complexity Low_complexity 1 29 0 243 239 0 0 chr13 49561617 49561663 -52311506 - Alu SINE Alu -178 124 79 1067 281 42 31 chr13 49562631 49563203 -52309966 - HAL1 LINE L1 -842 1665 1088 225 226 0 0 chr13 49563233 49563286 -52309883 + (TA)n Simple_repeat Simple_repeat 2 54 0 458 312 35 64 chr13 49563681 49564027 -52309142 - HAL1 LINE L1 -2148 359 24 1640 196 0 3 chr13 49564102 49564439 -52308730 - AluJo SINE Alu 0 336 1 204 219 0 0 chr13 49564560 49564601 -52308568 + (TATG)n Simple_repeat Simple_repeat 3 43 0 562 212 104 10 chr13 49564623 49564791 -52308378 + L1MB4 LINE L1 5916 6106 -1459 2272 92 3 13 chr13 49564791 49565105 -52308064 + AluY SINE Alu 1 311 0 562 212 104 10 chr13 49565105 49565129 -52308040 + L1MB4 LINE L1 6106 6126 -1439 1102 231 136 39 chr13 49565134 49565420 -52307749 - MLT1E LTR MaLR -73 520 207 3906 198 49 32 chr13 49565459 49566972 -52306197 + L1MB4 LINE L1 6069 7595 -4 321 328 129 5 chr13 49567186 49567372 -52305797 + MIR SINE MIR 52 260 -2 22 35 0 0 chr13 49567766 49567795 -52305374 + AT_rich Low_complexity Low_complexity 1 29 0 316 353 134 35 chr13 49569544 49569977 -52303192 - L3 LINE CR1 -23 1554 1079 495 175 21 0 chr13 49571104 49571201 -52301968 + MER89 LTR ERV1 1 99 -460 723 200 50 82 chr13 49571318 49571538 -52301631 + MER89 LTR ERV1 343 555 -4 21 0 0 0 chr13 49572987 49573008 -52300161 + AT_rich Low_complexity Low_complexity 1 21 0 246 337 122 0 chr13 49573614 49573712 -52299457 - L2 LINE L2 0 3313 3204 23 33 0 0 chr13 49573761 49573791 -52299378 + AT_rich Low_complexity Low_complexity 1 30 0 393 271 10 0 chr13 49575319 49575415 -52297754 - MER5A DNA MER1_type -79 110 14 2031 110 23 3 chr13 49577306 49577606 -52295563 + AluSp SINE Alu 1 306 -7 183 262 0 0 chr13 49577806 49577848 -52295321 - L2 LINE L2 -2 3311 3270 376 304 188 18 chr13 49578640 49578916 -52294253 + L2 LINE L2 2469 2791 -523 2138 104 0 3 chr13 49578981 49579270 -52293899 + AluSx SINE Alu 1 288 -24 270 298 124 45 chr13 49579341 49579519 -52293650 + L2 LINE L2 3119 3310 -3 23 33 0 0 chr13 49581815 49581845 -52291324 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 49581979 49582007 -52291162 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 49582472 49582495 -52290674 + AT_rich Low_complexity Low_complexity 1 23 0 4963 171 25 15 chr13 49583748 49585150 -52288019 - L1PA16 LINE L1 -5 6161 4748 3918 174 149 47 chr13 49585435 49586360 -52286809 + LTR28 LTR ERV1 1 1020 0 22 35 0 0 chr13 49586835 49586864 -52286305 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr13 49587039 49587083 -52286086 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr13 49587902 49587937 -52285232 + AT_rich Low_complexity Low_complexity 1 35 0 4027 108 44 2 chr13 49589159 49589777 -52283392 - LTR9B LTR ERV1 0 644 1 613 219 73 26 chr13 49589858 49590009 -52283160 + FRAM SINE Alu 1 150 -26 209 33 33 0 chr13 49590017 49590047 -52283122 + (TAA)n Simple_repeat Simple_repeat 1 31 0 221 355 0 0 chr13 49590289 49590351 -52282818 + MIR SINE MIR 5 66 -196 28 29 0 0 chr13 49590925 49590960 -52282209 + AT_rich Low_complexity Low_complexity 1 35 0 346 311 39 66 chr13 49590987 49591244 -52281925 + HAL1 LINE L1 1010 1259 -1248 390 57 0 0 chr13 49591504 49591557 -52281612 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 385 62 31 0 chr13 49591609 49591674 -52281495 + (TA)n Simple_repeat Simple_repeat 1 67 0 252 0 0 0 chr13 49591673 49591701 -52281468 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 927 189 0 0 chr13 49591701 49591860 -52281309 - Tigger7 DNA MER2_type -3 2488 2330 1188 178 119 8 chr13 49591860 49592113 -52281056 + MER49 LTR ERV1 1 281 -642 4693 67 29 6 chr13 49592113 49593120 -52280049 + MER11A LTR ERVK 1 1265 -1 2693 202 39 54 chr13 49593123 49593867 -52279302 + MER4D LTR ERV1 62 903 0 384 145 121 0 chr13 49593867 49593949 -52279220 - Tigger7 DNA MER2_type -158 2333 2242 233 250 0 0 chr13 49593952 49594000 -52279169 - Tigger7 DNA MER2_type -657 48 1 735 318 41 46 chr13 49594143 49594511 -52278658 - LTR16A LTR ERVL -6 444 79 252 147 53 21 chr13 49595262 49595357 -52277812 + (TTA)n Simple_repeat Simple_repeat 2 99 0 1630 96 34 0 chr13 49596332 49596571 -52276598 - L1PA7 LINE L1 -1 6153 5907 213 65 0 0 chr13 49596710 49596741 -52276428 + (A)n Simple_repeat Simple_repeat 1 31 0 34 24 0 0 chr13 49597202 49597243 -52275926 + AT_rich Low_complexity Low_complexity 1 41 0 194 184 26 0 chr13 49598784 49598822 -52274347 + L2 LINE L2 3261 3299 -14 22 0 0 0 chr13 49599602 49599624 -52273545 + AT_rich Low_complexity Low_complexity 1 22 0 834 249 78 55 chr13 49600055 49600621 -52272548 - L1MC5 LINE L1 -46 7915 7337 2753 193 4 33 chr13 49600674 49601223 -52271946 - MER52A LTR ERV1 0 1755 1223 2424 208 165 45 chr13 49601222 49602095 -52271074 - MER52A LTR ERV1 -692 1063 1 * 665 257 6 19 chr13 49602097 49602272 -52270897 + MER58B DNA MER1_type 45 334 -7 963 237 108 38 chr13 49602470 49602924 -52270245 + MER66A LTR ERV1 98 478 0 241 217 116 0 chr13 49603263 49603332 -52269837 + HsTC2 DNA Tc2 1 77 -1821 448 291 95 16 chr13 49603915 49604104 -52269065 - MIR SINE MIR 0 262 59 673 318 90 29 chr13 49604372 49604715 -52268454 + MLT1I LTR MaLR 35 398 -11 549 298 10 54 chr13 49605511 49605716 -52267453 - HERV16 LTR ERVL -3019 1977 1782 21 0 0 0 chr13 49605791 49605812 -52267357 + AT_rich Low_complexity Low_complexity 1 21 0 1737 221 20 0 chr13 49605819 49606177 -52266992 + MLT1A1 LTR MaLR 1 365 0 1409 333 67 57 chr13 49606210 49607279 -52265890 - HERV16 LTR ERVL -3455 1541 456 2139 161 14 0 chr13 49607279 49607640 -52265529 - MER47A DNA MER2_type 0 366 1 1409 333 67 57 chr13 49607640 49607773 -52265396 - HERV16 LTR ERVL -4540 456 326 8388 157 16 12 chr13 49607875 49608721 -52264448 + L1M1 LINE L1 1221 2076 -5489 2028 152 18 37 chr13 49608721 49609103 -52264066 + THE1C LTR MaLR 1 375 0 8388 157 16 12 chr13 49609103 49609660 -52263509 + L1M1 LINE L1 2076 2629 -4936 1872 250 7 22 chr13 49609657 49610055 -52263114 + L1M1 LINE L1 3944 4333 -3232 * 1662 180 3 16 chr13 49610055 49610361 -52262808 + AluJo SINE Alu 3 304 -8 1872 250 7 22 chr13 49610361 49610510 -52262659 + L1M1 LINE L1 4333 4483 -3082 21 0 0 0 chr13 49610789 49610810 -52262359 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chr13 49610987 49611023 -52262146 + (TG)n Simple_repeat Simple_repeat 1 36 0 1848 146 4 4 chr13 49611035 49611310 -52261859 - AluSq SINE Alu -33 280 6 254 171 122 0 chr13 49611441 49611523 -52261646 + L1MC4 LINE L1 6612 6703 -1339 23 33 0 0 chr13 49612642 49612672 -52260497 + AT_rich Low_complexity Low_complexity 1 30 0 205 303 55 48 chr13 49613049 49613194 -52259975 + MIR SINE MIR 62 207 -55 22 35 0 0 chr13 49613354 49613383 -52259786 + AT_rich Low_complexity Low_complexity 1 29 0 3734 146 72 81 chr13 49613383 49613750 -52259419 - L1PB4 LINE L1 -7 6149 5780 180 0 0 0 chr13 49613750 49613770 -52259399 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3734 146 72 81 chr13 49613770 49613824 -52259345 - L1PB4 LINE L1 -376 5780 5727 419 35 18 0 chr13 49613824 49613881 -52259288 + (CA)n Simple_repeat Simple_repeat 2 59 0 3734 146 72 81 chr13 49613881 49614456 -52258713 - L1PB4 LINE L1 -429 5727 5156 37 39 0 0 chr13 49614766 49614817 -52258352 + AT_rich Low_complexity Low_complexity 1 51 0 219 168 34 67 chr13 49615257 49615376 -52257793 + (TA)n Simple_repeat Simple_repeat 1 115 0 522 280 52 62 chr13 49617635 49618021 -52255148 + L1MC5 LINE L1 7352 7733 -228 204 125 0 0 chr13 49618040 49618072 -52255097 + (GGAAA)n Simple_repeat Simple_repeat 3 34 0 404 205 0 0 chr13 49618142 49618220 -52254949 + MER52A LTR ERV1 1 78 -1677 6608 201 99 20 chr13 49618221 49619641 -52253528 + MER52A LTR ERV1 224 1755 0 732 290 219 18 chr13 49619882 49620459 -52252710 + L2 LINE L2 2357 3050 -263 36 70 0 0 chr13 49620485 49620556 -52252613 + AT_rich Low_complexity Low_complexity 1 71 0 1946 143 7 3 chr13 49621063 49621423 -52251746 - AluY SINE Alu 0 361 1 26 64 0 0 chr13 49621548 49621595 -52251574 + AT_rich Low_complexity Low_complexity 1 47 0 2086 120 3 10 chr13 49621635 49621944 -52251225 + AluSx SINE Alu 6 312 0 26 0 0 67 chr13 49622206 49622251 -52250918 + AT_rich Low_complexity Low_complexity 1 42 0 34 79 0 0 chr13 49623450 49623526 -52249643 + AT_rich Low_complexity Low_complexity 1 76 0 240 361 137 15 chr13 49624262 49624467 -52248702 - MIR SINE MIR -28 234 5 24 32 0 0 chr13 49624665 49624696 -52248473 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 49625329 49625353 -52247816 + AT_rich Low_complexity Low_complexity 1 24 0 218 186 0 0 chr13 49626171 49626214 -52246955 + T-rich Low_complexity Low_complexity 2 44 0 32 67 0 0 chr13 49626330 49626390 -52246779 + AT_rich Low_complexity Low_complexity 1 60 0 24 67 0 0 chr13 49626565 49626610 -52246559 + AT_rich Low_complexity Low_complexity 1 45 0 269 298 12 24 chr13 49626623 49626707 -52246462 - L2 LINE L2 0 3272 3190 1892 253 48 31 chr13 49626731 49626876 -52246293 - MER90 LTR ERV1 0 614 473 2028 159 125 8 chr13 49626876 49627259 -52245910 - MSTA LTR MaLR 0 428 1 1892 253 48 31 chr13 49627259 49627717 -52245452 - MER90 LTR ERV1 -141 473 1 201 121 0 0 chr13 49629962 49629995 -52243174 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1671 178 27 27 chr13 49630751 49631116 -52242053 + MLT1A1 LTR MaLR 1 365 0 25 65 0 0 chr13 49631148 49631194 -52241975 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr13 49631220 49631243 -52241926 + AT_rich Low_complexity Low_complexity 1 23 0 7342 197 93 21 chr13 49632036 49633674 -52239495 + MER52A LTR ERV1 1 1755 0 230 168 40 192 chr13 49634143 49634268 -52238901 + MER112 DNA MER1_type 67 172 -88 264 294 83 9 chr13 49634625 49634734 -52238435 + L2 LINE L2 3197 3313 0 633 251 50 14 chr13 49635012 49635231 -52237938 - L2 LINE L2 -2 3311 3085 26 30 0 0 chr13 49635458 49635491 -52237678 + AT_rich Low_complexity Low_complexity 1 33 0 449 365 84 36 chr13 49636305 49636743 -52236426 + LTR33A LTR ERVL 65 523 0 829 156 6 6 chr13 49637182 49637355 -52235814 + GA-rich Low_complexity Low_complexity 4 176 0 269 232 37 12 chr13 49637621 49637703 -52235466 + MLT1K LTR MaLR 505 588 0 333 0 0 0 chr13 49638594 49638631 -52234538 + (CA)n Simple_repeat Simple_repeat 2 38 0 8774 115 21 2 chr13 49638976 49640238 -52232931 - HSMAR1 DNA Mariner -1 1286 1 27 73 0 0 chr13 49640351 49640406 -52232763 + AT_rich Low_complexity Low_complexity 1 55 0 28 107 0 0 chr13 49642175 49642287 -52230882 + AT_rich Low_complexity Low_complexity 1 112 0 212 59 29 0 chr13 49643051 49643085 -52230084 + (TA)n Simple_repeat Simple_repeat 2 36 0 324 188 0 0 chr13 49643121 49643190 -52229979 + CT-rich Low_complexity Low_complexity 4 72 0 356 206 20 39 chr13 49643234 49643336 -52229833 - MER20 DNA MER1_type -5 214 115 208 351 54 40 chr13 49643437 49643585 -52229584 + L3 LINE CR1 419 568 -1009 * 226 273 30 15 chr13 49643558 49643624 -52229545 - L2 LINE L2 0 3313 3247 254 314 149 0 chr13 49643639 49643760 -52229409 + L3 LINE CR1 563 701 -876 372 329 47 24 chr13 49644291 49644461 -52228708 + LTR16A LTR ERVL 25 198 -252 272 172 0 16 chr13 49646160 49646224 -52226945 + (TA)n Simple_repeat Simple_repeat 2 64 0 26 74 0 0 chr13 49647626 49647680 -52225489 + AT_rich Low_complexity Low_complexity 1 54 0 253 345 50 22 chr13 49648872 49649011 -52224158 + MIR SINE MIR 69 211 -51 942 280 213 1 chr13 49649164 49649663 -52223506 - MLT1E1 LTR MaLR 0 654 1 500 205 24 0 chr13 49650959 49651125 -52222044 + (TA)n Simple_repeat Simple_repeat 1 170 0 194 143 29 29 chr13 49651337 49651407 -52221762 + (TA)n Simple_repeat Simple_repeat 2 71 0 366 306 25 25 chr13 49652340 49652500 -52220669 + ERVL LTR ERVL 3409 3568 -2196 1088 251 78 105 chr13 49652641 49653007 -52220162 - MLT1C LTR MaLR -2 465 32 552 89 0 0 chr13 49653007 49653086 -52220083 - MADE1 DNA Mariner -1 79 1 1088 251 78 105 chr13 49653086 49653118 -52220051 - MLT1C LTR MaLR -435 32 1 382 367 47 64 chr13 49653192 49653308 -52219861 + ERVL LTR ERVL 3894 4010 -1754 1945 144 3 3 chr13 49653308 49653606 -52219563 + AluSx SINE Alu 1 298 -14 382 367 47 64 chr13 49653606 49653680 -52219489 + ERVL LTR ERVL 4010 4084 -1680 2292 102 0 0 chr13 49653680 49653984 -52219185 + AluSq SINE Alu 1 304 -9 382 367 47 64 chr13 49653984 49654389 -52218780 + ERVL LTR ERVL 4084 4480 -1284 308 336 17 0 chr13 49654665 49654781 -52218388 + ERVL LTR ERVL 4758 4875 -610 403 259 75 40 chr13 49655456 49655630 -52217539 + LTR16C LTR ERVL 312 491 0 851 295 115 24 chr13 49656080 49656628 -52216541 - L2 LINE L2 -1 3312 2726 24 0 0 0 chr13 49657315 49657339 -52215830 + AT_rich Low_complexity Low_complexity 1 24 0 2240 74 3 46 chr13 49658665 49658990 -52214179 - AluY SINE Alu 0 311 1 26 50 0 0 chr13 49659956 49659996 -52213173 + AT_rich Low_complexity Low_complexity 1 40 0 524 185 22 0 chr13 49660285 49660371 -52212798 + MLT1C LTR MaLR 1 88 -379 1565 124 80 0 chr13 49660371 49660620 -52212549 + MER7A DNA MER2_type 2 268 -78 318 315 103 75 chr13 49660660 49660873 -52212296 + L2 LINE L2 2849 3067 -246 335 260 0 13 chr13 49660899 49660976 -52212193 + MER7A DNA MER2_type 262 337 0 1115 235 63 70 chr13 49660976 49661359 -52211810 + MLT1C LTR MaLR 86 465 -2 577 352 129 31 chr13 49661464 49662141 -52211028 + L2 LINE L2 2334 3067 -246 221 375 31 21 chr13 49662276 49662372 -52210797 + L2 LINE L2 3136 3232 -40 245 197 15 0 chr13 49662392 49662458 -52210711 + GA-rich Low_complexity Low_complexity 2 68 0 555 167 0 0 chr13 49662869 49662971 -52210198 - AluJb SINE Alu -2 310 209 271 312 58 7 chr13 49664636 49664774 -52208395 + MIR SINE MIR 63 207 -55 275 399 115 12 chr13 49665014 49665345 -52207824 - L3 LINE CR1 -47 1530 1166 710 59 0 0 chr13 49665906 49666029 -52207140 - AluY SINE Alu 0 329 207 212 316 18 53 chr13 49666035 49666149 -52207020 - MIR SINE MIR -69 139 30 21 0 0 0 chr13 49667301 49667322 -52205847 + AT_rich Low_complexity Low_complexity 1 21 0 329 277 4 36 chr13 49667331 49667495 -52205674 + T-rich Low_complexity Low_complexity 1 158 0 2802 200 52 2 chr13 49667774 49668349 -52204820 - MER6A DNA MER2_type 0 605 2 665 277 135 12 chr13 49668482 49668807 -52204362 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr13 49668929 49668951 -52204218 + AT_rich Low_complexity Low_complexity 1 22 0 538 37 25 12 chr13 49669350 49669431 -52203738 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 2070 194 11 6 chr13 49670047 49670474 -52202695 + LTR42 LTR ERVL 1 495 0 2451 203 90 35 chr13 49670502 49671157 -52202012 - LTR8 LTR ERV1 0 691 1 467 271 211 28 chr13 49671440 49671930 -52201239 + LTR50 LTR ERVL 12 683 -112 228 147 0 59 chr13 49671935 49672003 -52201166 + L1MC4 LINE L1 6640 6703 -1339 276 149 0 0 chr13 49672007 49672054 -52201115 + (TA)n Simple_repeat Simple_repeat 2 48 0 651 319 73 45 chr13 49672915 49673379 -52199790 - MLT1G1 LTR MaLR -36 559 2 2163 106 0 7 chr13 49673447 49673740 -52199429 - AluSx SINE Alu -21 291 1 189 0 0 0 chr13 49673830 49673851 -52199318 + (TA)n Simple_repeat Simple_repeat 1 21 0 30 59 0 0 chr13 49673910 49673961 -52199208 + AT_rich Low_complexity Low_complexity 1 51 0 486 260 12 46 chr13 49674230 49674403 -52198766 + L1MC5 LINE L1 7757 7923 -38 2064 125 10 0 chr13 49675549 49675852 -52197317 - AluSg1 SINE Alu -3 306 1 531 282 18 24 chr13 49676307 49676477 -52196692 + L1MDa LINE L1 19 187 -6353 * 3135 217 34 41 chr13 49676475 49677446 -52195723 + L1MD1 LINE L1 5093 6053 -189 309 325 33 13 chr13 49677565 49677716 -52195453 + L1MD2 LINE L1 6190 6343 -16 1631 222 27 35 chr13 49678001 49678407 -52194762 - L1MD1 LINE L1 -335 5907 5505 257 264 0 23 chr13 49678943 49679030 -52194139 + L1MC4 LINE L1 6619 6703 -1339 24 53 0 0 chr13 49681683 49681721 -52191448 + AT_rich Low_complexity Low_complexity 1 38 0 708 133 127 17 chr13 49682763 49682936 -52190233 + L1MA9 LINE L1 6074 6265 -47 21 36 0 0 chr13 49683182 49683210 -52189959 + AT_rich Low_complexity Low_complexity 1 28 0 1147 206 22 0 chr13 49683232 49683460 -52189709 + MER46A DNA MER2_type 4 236 0 200 263 40 13 chr13 49683583 49683659 -52189510 + (TATG)n Simple_repeat Simple_repeat 3 80 0 482 101 0 13 chr13 49683869 49683948 -52189221 + (GA)n Simple_repeat Simple_repeat 1 78 0 266 224 13 13 chr13 49685682 49685758 -52187411 - L1MA8 LINE L1 -2 7708 7633 200 182 0 18 chr13 49685758 49685813 -52187356 + (TA)n Simple_repeat Simple_repeat 2 55 0 183 125 18 36 chr13 49685858 49685914 -52187255 + (TA)n Simple_repeat Simple_repeat 1 55 0 12193 191 77 30 chr13 49686115 49686428 -52186741 - L1MA8 LINE L1 -84 7626 7329 1202 61 12 0 chr13 49686428 49686591 -52186578 + (CATAA)n Simple_repeat Simple_repeat 3 167 0 12193 191 77 30 chr13 49686591 49690110 -52183059 - L1MA8 LINE L1 -381 7329 3605 2907 255 56 24 chr13 49690116 49691322 -52181847 - L1MA8 LINE L1 -4127 3438 2259 213 313 50 12 chr13 49691322 49691402 -52181767 + MER5A DNA MER1_type 89 171 -18 32 43 0 0 chr13 49691423 49691469 -52181700 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr13 49691923 49691969 -52181200 + AT_rich Low_complexity Low_complexity 1 46 0 1141 142 16 0 chr13 49692319 49692502 -52180667 - MER30B DNA MER1_type -4 186 1 4571 212 13 9 chr13 49693972 49695605 -52177564 - L1PA16 LINE L1 -2 6221 3518 2204 124 52 19 chr13 49695605 49695968 -52177201 + THE1C LTR MaLR 1 375 0 1061 76 6 19 chr13 49695968 49696126 -52177043 + THE1C-int LTR MaLR 1 156 -1424 813 103 24 0 chr13 49696123 49696249 -52176920 + THE1C-int LTR MaLR 97 225 -1355 * 1096 127 44 74 chr13 49696248 49696477 -52176692 - L1PA16 LINE L1 -4250 1953 1732 1367 176 8 49 chr13 49696477 49696722 -52176447 - MER1B DNA MER1_type -62 235 1 3687 222 138 9 chr13 49696722 49697804 -52175365 - L1PA16 LINE L1 -4488 1715 400 348 307 63 48 chr13 49698009 49698279 -52174890 - L1MA8 LINE L1 -5783 1783 1510 230 275 50 44 chr13 49698497 49698657 -52174512 - L1PA12 LINE L1 -5566 2015 1855 543 346 17 48 chr13 49698850 49699269 -52173900 - L1PA12 LINE L1 -7166 415 10 3823 90 17 9 chr13 49699730 49700273 -52172896 + L1PA8 LINE L1 5626 6172 0 244 291 133 20 chr13 49700882 49701033 -52172136 + MIR SINE MIR 33 200 -62 263 367 50 6 chr13 49701844 49702024 -52171145 - MIR SINE MIR -64 198 11 211 289 22 67 chr13 49702226 49702316 -52170853 + L2 LINE L2 2962 3047 -225 224 301 48 24 chr13 49702471 49702554 -52170615 + L2 LINE L2 3153 3237 -35 1496 206 0 11 chr13 49702556 49702838 -52170331 + AluJb SINE Alu 1 279 -33 2831 100 40 7 chr13 49702838 49703267 -52169902 + MLT2A1 LTR ERVL 2 444 0 23 0 0 0 chr13 49703272 49703295 -52169874 + AT_rich Low_complexity Low_complexity 1 23 0 217 349 56 8 chr13 49704717 49704843 -52168326 - L2 LINE L2 -3 3310 3179 1090 190 62 4 chr13 49704977 49705203 -52167966 + L1MC1 LINE L1 6086 6324 -9 23 0 0 0 chr13 49705320 49705343 -52167826 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr13 49705753 49705783 -52167386 + AT_rich Low_complexity Low_complexity 1 30 0 225 0 0 0 chr13 49705989 49706014 -52167155 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 286 222 22 33 chr13 49706259 49706349 -52166820 + GA-rich Low_complexity Low_complexity 2 90 0 24 0 0 0 chr13 49706482 49706506 -52166663 + AT_rich Low_complexity Low_complexity 1 24 0 398 370 46 58 chr13 49706982 49707488 -52165681 - L2 LINE L2 -52 3220 2718 227 321 57 38 chr13 49707627 49707733 -52165436 - MER91A DNA MER1_type -83 113 6 203 329 59 0 chr13 49708077 49708162 -52165007 - MIR SINE MIR -12 250 161 1597 160 0 48 chr13 49708333 49708626 -52164543 + AluJb SINE Alu 34 312 0 28 29 0 0 chr13 49708944 49708979 -52164190 + AT_rich Low_complexity Low_complexity 1 35 0 4086 193 19 10 chr13 49709653 49710855 -52162314 + L1MC1 LINE L1 4832 6040 -293 678 162 0 0 chr13 49710887 49710992 -52162177 + Tigger1 DNA MER2_type 2313 2417 -1 463 291 96 59 chr13 49711098 49711586 -52161583 - L1ME LINE L1 -348 5822 5317 1418 172 44 7 chr13 49711664 49711795 -52161374 + AluSx SINE Alu 3 128 -184 1009 13 57 6 chr13 49711795 49711953 -52161216 + (TAAAA)n Simple_repeat Simple_repeat 2 167 0 1418 172 44 7 chr13 49711953 49712117 -52161052 + AluSx SINE Alu 128 309 -3 607 123 0 16 chr13 49712129 49712168 -52161001 + (GGAA)n Simple_repeat Simple_repeat 2 40 -81 1995 105 7 30 chr13 49712168 49712473 -52160696 + AluY SINE Alu 1 298 -13 607 123 0 16 chr13 49712473 49712555 -52160614 + (GGAA)n Simple_repeat Simple_repeat 40 121 0 633 239 0 22 chr13 49712578 49712731 -52160438 - FLAM_A SINE Alu 0 133 1 227 230 8 79 chr13 49712739 49712865 -52160304 - L1ME LINE L1 -903 5243 5127 27 29 0 0 chr13 49713437 49713471 -52159698 + AT_rich Low_complexity Low_complexity 1 34 0 1461 215 0 27 chr13 49713841 49714139 -52159030 - AluJb SINE Alu -17 295 6 460 236 8 55 chr13 49715500 49715627 -52157542 - LTR28 LTR ERV1 0 1020 900 1524 216 74 111 chr13 49715704 49716471 -52156698 - LTR1B LTR ERV1 -81 745 7 2335 302 223 14 chr13 49716471 49717711 -52155458 - L2 LINE L2 -1291 2023 525 2727 146 20 2 chr13 49717712 49718171 -52154998 + L1P LINE L1 3856 4322 -1824 503 193 46 0 chr13 49718179 49718288 -52154881 - MLT1C LTR MaLR -353 114 1 588 201 97 8 chr13 49718331 49718465 -52154704 - MLT1C LTR MaLR -316 151 6 1555 112 0 0 chr13 49718657 49718871 -52154298 + AluSx SINE Alu 1 214 -98 2138 73 44 0 chr13 49719076 49719369 -52153800 - AluY SINE Alu 0 305 1 21 0 0 0 chr13 49721225 49721246 -52151923 + AT_rich Low_complexity Low_complexity 1 21 0 378 91 0 0 chr13 49722316 49722371 -52150798 + (CA)n Simple_repeat Simple_repeat 2 56 0 321 296 32 17 chr13 49723437 49723619 -52149550 + L1MCc LINE L1 8 533 -5889 321 136 25 25 chr13 49723935 49724016 -52149153 + GA-rich Low_complexity Low_complexity 4 84 0 2463 216 49 13 chr13 49724114 49724726 -52148443 + L1MD3 LINE L1 7353 7986 -9 21 0 0 0 chr13 49724860 49724881 -52148288 + AT_rich Low_complexity Low_complexity 1 21 0 458 264 138 13 chr13 49725587 49725746 -52147423 + MER5A DNA MER1_type 11 189 0 600 340 68 0 chr13 49726248 49726483 -52146686 - MIR SINE MIR -4 258 8 180 0 0 0 chr13 49726717 49726737 -52146432 + (TC)n Simple_repeat Simple_repeat 1 20 0 318 50 0 0 chr13 49726738 49726778 -52146391 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr13 49727107 49727136 -52146033 + AT_rich Low_complexity Low_complexity 1 29 0 691 250 22 9 chr13 49727298 49727522 -52145647 + L1M4 LINE L1 4216 4442 -1704 351 239 0 0 chr13 49727522 49727610 -52145559 + (TA)n Simple_repeat Simple_repeat 1 88 0 309 282 10 19 chr13 49727639 49727742 -52145427 + L1M4 LINE L1 4495 4596 -1550 2358 98 0 0 chr13 49728446 49728751 -52144418 - AluSx SINE Alu -7 305 1 526 281 152 0 chr13 49729015 49729179 -52143990 + MIR3 SINE MIR 19 207 -1 23 0 0 0 chr13 49730231 49730254 -52142915 + AT_rich Low_complexity Low_complexity 1 23 0 312 322 49 7 chr13 49730819 49730962 -52142207 + MIR SINE MIR 100 248 -14 817 213 6 6 chr13 49731226 49731390 -52141779 - FRAM SINE Alu -12 164 1 28 0 0 0 chr13 49731830 49731858 -52141311 + AT_rich Low_complexity Low_complexity 1 28 0 1539 164 6 61 chr13 49733465 49733777 -52139392 + AluJb SINE Alu 7 301 -11 29 75 0 21 chr13 49733900 49733971 -52139198 + AT_rich Low_complexity Low_complexity 1 71 -20 1888 201 45 2 chr13 49733971 49734374 -52138795 - L1MA6 LINE L1 0 6300 5881 29 75 0 21 chr13 49734374 49734395 -52138774 + AT_rich Low_complexity Low_complexity 71 91 0 190 343 108 20 chr13 49735332 49735434 -52137735 - L2 LINE L2 -199 3073 2963 2087 123 19 13 chr13 49738383 49738693 -52134476 + AluSx SINE Alu 1 312 0 233 380 0 0 chr13 49738951 49739022 -52134147 - L3 LINE CR1 -477 1100 1030 296 329 113 9 chr13 49739038 49739086 -52134083 - MIR SINE MIR -15 247 205 577 281 108 16 chr13 49739086 49739392 -52133777 + MER46C DNA MER2_type 5 338 0 296 329 113 9 chr13 49739392 49739438 -52133731 - MIR SINE MIR -57 205 165 2286 111 13 49 chr13 49739438 49739825 -52133344 - THE1C LTR MaLR -2 373 1 296 329 113 9 chr13 49739825 49739942 -52133227 - MIR SINE MIR -97 165 13 2080 52 8 0 chr13 49740218 49740485 -52132684 - L1PA7 LINE L1 0 6154 5886 230 336 26 35 chr13 49741207 49741323 -52131846 - L2 LINE L2 0 3313 3199 540 256 0 28 chr13 49741642 49741818 -52131351 - L1MEc LINE L1 -3647 2568 2398 3914 220 21 21 chr13 49741834 49745744 -52127425 - L1PB4 LINE L1 -3 7591 3487 703 310 57 63 chr13 49745776 49746302 -52126867 - L1PB4 LINE L1 -6421 1164 11 1263 282 101 42 chr13 49746318 49747831 -52125338 - L1MEc LINE L1 -3965 2431 829 33 0 0 0 chr13 49747964 49747997 -52125172 + AT_rich Low_complexity Low_complexity 1 33 0 336 270 157 22 chr13 49748375 49748560 -52124609 - L1MEc LINE L1 -5859 346 137 25 31 0 0 chr13 49748854 49748886 -52124283 + AT_rich Low_complexity Low_complexity 1 32 0 219 263 0 0 chr13 49750063 49750120 -52123049 + T-rich Low_complexity Low_complexity 1 57 0 2146 108 0 3 chr13 49750942 49751238 -52121931 - AluSg SINE Alu -15 295 1 30 93 0 0 chr13 49751379 49751465 -52121704 + AT_rich Low_complexity Low_complexity 1 86 0 253 368 63 0 chr13 49751502 49751597 -52121572 + L2 LINE L2 2897 2997 -316 1790 229 11 42 chr13 49751934 49752411 -52120758 + MLT1D LTR MaLR 42 503 -2 615 263 108 80 chr13 49752521 49753048 -52120121 - L1ME LINE L1 -351 5811 5268 326 261 171 25 chr13 49753060 49753259 -52119910 - L1ME LINE L1 -913 5233 5006 716 249 68 32 chr13 49753309 49753558 -52119611 - L1MA4 LINE L1 -6 6294 6037 406 269 178 11 chr13 49753726 49753990 -52119179 - L1ME LINE L1 -1346 4800 4493 354 284 81 56 chr13 49754419 49754704 -52118465 + MLT1I LTR MaLR 116 407 -2 576 113 0 0 chr13 49755165 49755245 -52117924 + MADE1 DNA Mariner 1 80 0 852 210 54 73 chr13 49756918 49757232 -52115937 - L1PB4 LINE L1 -987 5159 4852 4854 182 14 1 chr13 49757235 49758216 -52114953 + L1PB4 LINE L1 5162 6155 -1 1348 237 63 19 chr13 49759890 49760253 -52112916 + MLT1B LTR MaLR 1 379 -11 2045 105 27 17 chr13 49760754 49761050 -52112119 - AluSx SINE Alu -12 300 2 967 272 87 54 chr13 49761279 49761819 -52111350 - MLT2E LTR ERVL -2 626 6 4512 180 76 10 chr13 49762333 49762666 -52110503 - L1MA4 LINE L1 -23 6277 5968 267 54 0 0 chr13 49762666 49762703 -52110466 + (TG)n Simple_repeat Simple_repeat 2 38 0 4512 180 76 10 chr13 49762703 49763460 -52109709 - L1MA4 LINE L1 -332 5968 5101 1403 143 45 22 chr13 49765636 49765859 -52107310 + THE1B LTR MaLR 125 352 -12 11471 100 4 2 chr13 49765861 49767438 -52105731 + THE1B-int LTR MaLR 1 1580 0 2195 138 39 14 chr13 49767438 49767793 -52105376 + THE1B LTR MaLR 1 364 0 537 304 98 10 chr13 49768206 49768400 -52104769 + MIR SINE MIR 36 246 -16 306 250 45 9 chr13 49769426 49769538 -52103631 - L1ME4a LINE L1 -241 5880 5765 1654 175 3 18 chr13 49769545 49769855 -52103314 - AluJo SINE Alu 0 306 1 22 0 0 0 chr13 49769915 49769937 -52103232 + AT_rich Low_complexity Low_complexity 1 22 0 230 214 86 0 chr13 49770109 49770179 -52102990 - L1ME4a LINE L1 -681 5440 5365 580 314 83 32 chr13 49770962 49771300 -52101869 - L2 LINE L2 -18 3295 2941 306 273 27 9 chr13 49771609 49771719 -52101450 - HAL1 LINE L1 -111 2396 2285 408 256 64 30 chr13 49771726 49771929 -52101240 - HAL1 LINE L1 -262 2245 2036 343 182 15 15 chr13 49771956 49772022 -52101147 + Tigger5 DNA MER2_type 13 78 -2245 430 203 0 13 chr13 49772023 49772102 -52101067 - Tigger5 DNA MER2_type -4 2319 2242 354 191 59 0 chr13 49772097 49772165 -52101004 + Tigger5 DNA MER2_type 2247 2318 -5 * 200 182 45 0 chr13 49772273 49772317 -52100852 + T-rich Low_complexity Low_complexity 5 50 0 1502 293 70 37 chr13 49772440 49772658 -52100511 - HAL1 LINE L1 -593 1914 1705 1318 254 46 3 chr13 49772658 49772985 -52100184 + MER58B DNA MER1_type 1 341 0 1502 293 70 37 chr13 49772985 49773549 -52099620 - HAL1 LINE L1 -802 1705 1106 230 132 44 15 chr13 49773647 49773715 -52099454 + (TA)n Simple_repeat Simple_repeat 2 71 0 843 275 53 103 chr13 49773970 49774476 -52098693 - MLT1F1 LTR MaLR -34 533 59 1501 120 143 8 chr13 49774476 49774735 -52098434 + AluSq SINE Alu 1 294 -9 843 275 53 103 chr13 49774735 49774788 -52098381 - MLT1F1 LTR MaLR -508 59 5 22 70 0 0 chr13 49775088 49775131 -52098038 + AT_rich Low_complexity Low_complexity 1 43 0 298 227 36 9 chr13 49775697 49775807 -52097362 + (TA)n Simple_repeat Simple_repeat 1 113 0 * 307 240 41 12 chr13 49775782 49775953 -52097216 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 * 350 202 45 34 chr13 49775918 49776096 -52097073 + (TTATA)n Simple_repeat Simple_repeat 1 180 0 308 262 24 12 chr13 49776095 49776259 -52096910 + (TATAA)n Simple_repeat Simple_repeat 5 170 0 * 50 14 0 28 chr13 49776259 49776282 -52096887 + AT_rich Low_complexity Low_complexity 1 23 -47 1986 149 0 0 chr13 49776282 49776571 -52096598 - AluSx SINE Alu -23 289 1 50 14 0 28 chr13 49776571 49776619 -52096550 + AT_rich Low_complexity Low_complexity 23 70 0 275 229 11 11 chr13 49776619 49776899 -52096270 + (TA)n Simple_repeat Simple_repeat 1 280 0 1565 181 122 20 chr13 49776900 49777406 -52095763 - MLT2A2 LTR ERVL 0 554 1 244 294 8 17 chr13 49777406 49777525 -52095644 + (TA)n Simple_repeat Simple_repeat 2 119 0 27 49 0 0 chr13 49777869 49777910 -52095259 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 49778798 49778823 -52094346 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 49779287 49779310 -52093859 + AT_rich Low_complexity Low_complexity 1 23 0 229 338 79 44 chr13 49780092 49780320 -52092849 + MIR SINE MIR 27 262 0 2313 172 64 9 chr13 49780652 49781089 -52092080 + LOR1b LTR ERV1 1 461 0 2094 163 24 21 chr13 49781180 49781561 -52091608 - LTR8 LTR ERV1 0 691 310 1094 174 0 15 chr13 49781608 49781804 -52091365 - LTR8 LTR ERV1 -382 309 117 7577 27 0 0 chr13 49781822 49782770 -52090399 - L1PA4 LINE L1 -3 6152 5205 6996 20 0 1 chr13 49782770 49783603 -52089566 + L1PA4 LINE L1 4375 5206 -940 615 226 22 0 chr13 49783603 49783740 -52089429 - LTR8A LTR ERV1 -587 140 1 28 0 0 0 chr13 49784296 49784324 -52088845 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 49784348 49784383 -52088786 + AT_rich Low_complexity Low_complexity 1 35 0 203 204 19 0 chr13 49785439 49785493 -52087676 + (TA)n Simple_repeat Simple_repeat 1 55 0 691 225 0 0 chr13 49785589 49785718 -52087451 + MER94 DNA DNA 6 134 0 183 325 0 100 chr13 49786850 49786970 -52086199 + L2 LINE L2 3159 3266 -47 22 0 0 0 chr13 49786996 49787018 -52086151 + AT_rich Low_complexity Low_complexity 1 22 0 208 156 0 78 chr13 49788968 49789032 -52084137 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 204 158 0 0 chr13 49789085 49789123 -52084046 + (TA)n Simple_repeat Simple_repeat 2 39 0 312 295 26 0 chr13 49789157 49789313 -52083856 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr13 49789337 49789359 -52083810 + AT_rich Low_complexity Low_complexity 1 22 0 415 314 25 38 chr13 49790211 49790370 -52082799 + MIR SINE MIR 1 157 -105 2796 299 71 16 chr13 49790513 49791480 -52081689 + L1MDa LINE L1 19 1038 -5502 303 186 14 0 chr13 49791479 49791549 -52081620 + L1MB3 LINE L1 6085 6155 -28 * 353 219 34 0 chr13 49791549 49791668 -52081501 + (TA)n Simple_repeat Simple_repeat 2 124 0 180 111 0 0 chr13 49791716 49791743 -52081426 + (TA)n Simple_repeat Simple_repeat 1 27 0 2985 219 138 22 chr13 49791875 49792993 -52080176 + L1MDa LINE L1 1025 2271 -4269 303 323 20 0 chr13 49793355 49793454 -52079715 + ERVL LTR ERVL 3644 3744 -2020 2208 113 3 0 chr13 49793457 49793767 -52079402 - AluSq SINE Alu 0 313 3 806 109 0 0 chr13 49793977 49794087 -52079082 - AluJb SINE Alu -179 133 24 371 138 35 0 chr13 49794140 49794198 -52078971 + AluJ/FLAM SINE Alu 14 73 -229 499 301 146 48 chr13 49794205 49794617 -52078552 + ERVL LTR ERVL 4010 4461 -1303 395 181 147 35 chr13 49796398 49796514 -52076655 + MER5B DNA MER1_type 15 143 -35 324 0 0 0 chr13 49796558 49796594 -52076575 + (CA)n Simple_repeat Simple_repeat 2 37 0 926 331 82 59 chr13 49796928 49798016 -52075153 + ERVL LTR ERVL 1622 2734 -3030 4830 136 66 51 chr13 49798019 49799322 -52073847 + pTR5 LTR ERV1 742 2355 -83 1981 94 38 7 chr13 49799322 49799610 -52073559 - AluY SINE Alu -14 297 1 4830 136 66 51 chr13 49799610 49799696 -52073473 + pTR5 LTR ERV1 2355 2438 0 271 332 116 42 chr13 49799827 49800137 -52073032 + ERVL LTR ERVL 2891 3223 -2541 295 351 43 22 chr13 49800298 49800483 -52072686 + ERVL LTR ERVL 4361 4549 -1215 2228 90 0 20 chr13 49800773 49801072 -52072097 - AluY SINE Alu -17 294 2 2680 141 95 8 chr13 49801118 49801601 -52071568 - L1PA16 LINE L1 -7 6159 5635 5109 187 36 10 chr13 49801781 49803316 -52069853 + L1MA8 LINE L1 4725 6288 -3 363 263 88 15 chr13 49804580 49804717 -52068452 - MLT1J1 LTR MaLR -298 148 2 234 233 178 14 chr13 49805263 49805336 -52067833 + MIR SINE MIR 168 252 -10 28 48 0 0 chr13 49805799 49805841 -52067328 + AT_rich Low_complexity Low_complexity 1 42 0 2997 313 113 51 chr13 49807485 49808790 -52064379 + L2 LINE L2 36 1259 -2055 249 33 0 0 chr13 49808790 49808820 -52064349 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2997 313 113 51 chr13 49808820 49809053 -52064116 + L2 LINE L2 1259 1476 -1838 2199 68 21 4 chr13 49809053 49809333 -52063836 + AluY SINE Alu 1 285 -26 2997 313 113 51 chr13 49809333 49809864 -52063305 + L2 LINE L2 1476 2234 -1080 1479 33 0 11 chr13 49809964 49810147 -52063022 + AluY SINE Alu 119 299 -12 367 370 58 7 chr13 49810600 49810754 -52062415 + MER91A DNA MER1_type 1 162 -34 29 0 0 0 chr13 49811678 49811707 -52061462 + AT_rich Low_complexity Low_complexity 1 29 0 569 286 89 5 chr13 49811869 49812082 -52061087 + MIR SINE MIR 31 261 -1 21 71 0 0 chr13 49814385 49814427 -52058742 + AT_rich Low_complexity Low_complexity 1 42 0 296 252 63 8 chr13 49814502 49814629 -52058540 + L1MDa LINE L1 1554 1687 -4853 230 228 239 0 chr13 49814867 49814959 -52058210 + L1MDa LINE L1 3044 3157 -3383 24 32 0 0 chr13 49815108 49815139 -52058030 + AT_rich Low_complexity Low_complexity 1 31 0 426 296 55 20 chr13 49815188 49815387 -52057782 + MER58C DNA MER1_type 1 206 -9 611 279 54 8 chr13 49815398 49815731 -52057438 + L1MDa LINE L1 3408 3754 -2786 363 287 17 0 chr13 49815806 49815921 -52057248 + L1MDa LINE L1 4108 4224 -2316 734 315 132 78 chr13 49815931 49816753 -52056416 + LTR28 LTR ERV1 1 1020 0 243 181 58 63 chr13 49817036 49817141 -52056028 + L1MDa LINE L1 4492 4589 -1951 28 61 0 0 chr13 49817207 49817256 -52055913 + AT_rich Low_complexity Low_complexity 1 49 0 1286 124 52 4 chr13 49817364 49817597 -52055572 + L1MA2 LINE L1 6061 6304 0 1969 149 0 13 chr13 49818305 49818614 -52054555 + AluSx SINE Alu 1 305 -7 1176 221 129 28 chr13 49818691 49819016 -52054153 + MLT1D LTR MaLR 148 505 0 692 228 60 64 chr13 49819016 49819123 -52054046 + MLT1D-int LTR MaLR 1 107 -1264 2472 77 3 0 chr13 49819123 49819433 -52053736 - AluY SINE Alu 0 311 1 692 228 60 64 chr13 49819433 49819623 -52053546 + MLT1D-int LTR MaLR 107 297 -1074 1723 224 19 131 chr13 49819680 49820367 -52052802 + MLT1D-int LTR MaLR 278 887 -484 405 0 0 0 chr13 49820734 49820779 -52052390 + (TA)n Simple_repeat Simple_repeat 2 46 0 368 316 112 53 chr13 49820892 49821481 -52051688 + L1MC/D LINE L1 3249 3872 -2274 232 317 59 27 chr13 49821922 49822108 -52051061 + L1MC/D LINE L1 5625 5816 -1992 191 189 19 0 chr13 49822398 49822451 -52050718 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 338 274 118 22 chr13 49822894 49823029 -52050140 - L2 LINE L2 -6 3307 3160 1631 148 26 33 chr13 49823606 49823910 -52049259 + AluSx SINE Alu 1 302 -10 263 328 28 90 chr13 49823912 49824089 -52049080 - L3 LINE CR1 -28 1549 1384 32 26 0 0 chr13 49824715 49824754 -52048415 + AT_rich Low_complexity Low_complexity 1 39 0 201 329 14 0 chr13 49824933 49825003 -52048166 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 2588 46 0 3 chr13 49825561 49825868 -52047301 - AluY SINE Alu -5 306 1 24 85 0 0 chr13 49826379 49826438 -52046731 + AT_rich Low_complexity Low_complexity 1 59 0 987 172 46 0 chr13 49826987 49827161 -52046008 + Tigger1 DNA MER2_type 2237 2418 0 653 216 7 0 chr13 49827197 49827345 -52045824 - L1M4 LINE L1 -1200 4946 4798 980 300 16 16 chr13 49827349 49827789 -52045380 - L1M4 LINE L1 -2515 3631 3192 462 218 78 53 chr13 49827797 49828040 -52045129 - L1MCa LINE L1 -5016 1548 1300 835 284 74 34 chr13 49828047 49828334 -52044835 - L1MCa LINE L1 -5203 894 572 1222 281 132 47 chr13 49828402 49828948 -52044221 - L1MCa LINE L1 -5485 560 56 242 324 159 6 chr13 49829420 49829590 -52043579 + MIR SINE MIR 67 262 0 180 328 17 17 chr13 49830765 49830823 -52042346 - L2 LINE L2 -14 3258 3201 220 317 24 37 chr13 49831101 49831183 -52041986 + MIR SINE MIR 51 131 -131 277 315 60 27 chr13 49831365 49831514 -52041655 + MIR SINE MIR 36 189 -73 256 385 50 0 chr13 49832530 49832691 -52040478 + L2 LINE L2 1261 1429 -1885 6434 25 0 1 chr13 49833390 49834144 -52039025 + L1PA3 LINE L1 5403 6155 0 423 353 32 11 chr13 49837127 49837317 -52035852 + MIR SINE MIR 43 236 -26 230 246 43 14 chr13 49837389 49837458 -52035711 - MIR SINE MIR -74 188 118 200 371 56 11 chr13 49837589 49837678 -52035491 + L2 LINE L2 3137 3229 -43 21 89 0 0 chr13 49838582 49838638 -52034531 + AT_rich Low_complexity Low_complexity 1 56 0 926 266 118 45 chr13 49838950 49839270 -52033899 + L1ME3A LINE L1 5520 5815 -355 1549 192 89 9 chr13 49839270 49839608 -52033561 - MLT1A1 LTR MaLR 0 365 1 926 266 118 45 chr13 49839608 49839882 -52033287 + L1ME3A LINE L1 5815 6158 -12 574 264 46 110 chr13 49840063 49840564 -52032605 - MLT1J LTR MaLR -1 510 42 29 0 0 0 chr13 49840771 49840800 -52032369 + AT_rich Low_complexity Low_complexity 1 29 0 215 386 94 0 chr13 49841180 49841307 -52031862 + L2 LINE L2 3134 3272 0 343 292 110 33 chr13 49841417 49841724 -52031445 + MLT1J2 LTR MaLR 94 386 -23 738 233 70 51 chr13 49842084 49842299 -52030870 - MER20 DNA MER1_type 0 219 1 33 25 0 0 chr13 49843035 49843075 -52030094 + AT_rich Low_complexity Low_complexity 1 40 0 201 235 39 0 chr13 49843701 49843752 -52029417 + L2 LINE L2 3256 3308 -5 1994 135 39 33 chr13 49845659 49846021 -52027148 - THE1B LTR MaLR 0 364 1 11084 113 1 1 chr13 49846021 49847599 -52025570 - THE1B-int LTR MaLR 0 1580 2 1496 147 52 130 chr13 49847600 49848007 -52025162 - THE1C LTR MaLR 0 375 1 234 346 12 0 chr13 49848427 49848508 -52024661 - L2 LINE L2 0 3313 3232 261 0 0 0 chr13 49849421 49849450 -52023719 + (TTG)n Simple_repeat Simple_repeat 2 30 0 255 333 122 8 chr13 49849988 49850111 -52023058 + MIR SINE MIR 11 147 -115 25 75 0 0 chr13 49850523 49850576 -52022593 + AT_rich Low_complexity Low_complexity 1 53 0 245 87 0 22 chr13 49850591 49850637 -52022532 + (TA)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr13 49851993 49852013 -52021156 + (T)n Simple_repeat Simple_repeat 1 20 0 496 192 0 115 chr13 49853403 49853533 -52019636 - L2 LINE L2 -6 3307 3193 32 57 0 0 chr13 49853543 49853596 -52019573 + AT_rich Low_complexity Low_complexity 1 53 0 4552 138 11 15 chr13 49853603 49854356 -52018813 + L1PA15 LINE L1 5413 6162 -3 550 319 112 28 chr13 49854682 49855447 -52017722 - HAL1 LINE L1 -800 1707 878 230 194 28 28 chr13 49856423 49856495 -52016674 + (TA)n Simple_repeat Simple_repeat 1 72 0 1793 113 0 33 chr13 49857031 49857305 -52015864 + AluSq SINE Alu 1 265 -48 519 263 32 0 chr13 49857597 49857783 -52015386 + L1ME LINE L1 5258 5449 -715 * 6034 113 2 0 chr13 49857781 49858655 -52014514 - L1P LINE L1 -1378 4768 3893 1394 143 0 0 chr13 49858652 49858882 -52014287 - L1P LINE L1 -1705 4441 4212 * 2632 178 22 20 chr13 49858950 49859451 -52013718 - MER67C LTR ERV1 -208 502 1 5452 196 48 11 chr13 49859643 49860834 -52012335 - L1 LINE L1 -911 5235 3995 3529 112 84 17 chr13 49860834 49861408 -52011761 - LTR9 LTR ERV1 0 612 1 5452 196 48 11 chr13 49861408 49861454 -52011715 - L1 LINE L1 -2151 3995 3952 4229 195 6 7 chr13 49861452 49862402 -52010767 + L1MA9 LINE L1 5254 6298 -14 * 2207 112 0 3 chr13 49862494 49862789 -52010380 - AluSg SINE Alu -16 294 1 328 319 28 7 chr13 49863043 49863187 -52009982 + MER69 DNA AcHobo 1 147 -2379 21 89 0 0 chr13 49864055 49864111 -52009058 + AT_rich Low_complexity Low_complexity 1 56 0 265 291 67 34 chr13 49865255 49865434 -52007735 + L1M4 LINE L1 4647 4831 -1315 228 290 52 26 chr13 49865502 49865771 -52007398 + L1M4 LINE L1 5047 5322 -824 522 287 104 12 chr13 49865779 49866030 -52007139 - L1ME3A LINE L1 -285 5885 5612 481 230 170 32 chr13 49866129 49866355 -52006814 - MER31B LTR ERV1 -244 241 15 495 274 104 43 chr13 49866365 49866704 -52006465 - L1ME3A LINE L1 -579 5591 5239 501 137 14 0 chr13 49866735 49866808 -52006361 - MER2 DNA MER2_type -270 75 2 21 71 0 0 chr13 49867385 49867427 -52005742 + AT_rich Low_complexity Low_complexity 1 42 0 587 295 171 25 chr13 49869636 49870076 -52003093 - L2 LINE L2 -5 3308 2802 340 299 45 140 chr13 49870180 49870393 -52002776 - L2 LINE L2 -512 2802 2570 2089 130 3 0 chr13 49870393 49870701 -52002468 + AluSg SINE Alu 1 309 -1 340 299 45 140 chr13 49870701 49871034 -52002135 - L2 LINE L2 -744 2570 2310 3463 118 31 6 chr13 49871034 49871360 -52001809 + MER41C LTR ERV1 1 348 -206 189 0 0 0 chr13 49871360 49871381 -52001788 + (TA)n Simple_repeat Simple_repeat 1 21 0 3463 118 31 6 chr13 49871381 49871594 -52001575 + MER41C LTR ERV1 348 554 0 340 299 45 140 chr13 49871594 49871617 -52001552 - L2 LINE L2 -1004 2310 2286 3860 88 24 0 chr13 49872704 49873239 -51999930 - MER41A LTR ERV1 -6 548 1 48 43 0 0 chr13 49874283 49874352 -51998817 + AT_rich Low_complexity Low_complexity 1 69 0 715 239 197 58 chr13 49875189 49875448 -51997721 + MLT2B1 LTR ERVL 170 464 -56 263 247 13 13 chr13 49875482 49875559 -51997610 - HERVL LTR ERVL -5553 101 25 11752 196 17 16 chr13 49875559 49878242 -51994927 + ERVL LTR ERVL 813 3551 -2213 4290 183 11 15 chr13 49878250 49879038 -51994131 + ERVL LTR ERVL 3779 4563 -1201 237 83 0 0 chr13 49879113 49879149 -51994020 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 21 82 0 0 chr13 49879300 49879349 -51993820 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 49879377 49879398 -51993771 + AT_rich Low_complexity Low_complexity 1 21 0 270 239 90 50 chr13 49879678 49879879 -51993290 - L1ME LINE L1 -696 5466 5258 272 207 83 1 chr13 49879959 49880041 -51993128 - L1ME2 LINE L1 -8 6326 6077 423 207 0 2 chr13 49880443 49880543 -51992626 - L1MA6 LINE L1 -6 6294 6188 770 330 95 35 chr13 49880544 49881383 -51991786 - L1ME LINE L1 -1153 4993 4104 200 150 0 67 chr13 49881626 49881686 -51991483 + (TTTTA)n Simple_repeat Simple_repeat 5 60 0 199 300 43 29 chr13 49881718 49881788 -51991381 + L2 LINE L2 3187 3257 -15 22 0 0 0 chr13 49882093 49882115 -51991054 + AT_rich Low_complexity Low_complexity 1 22 0 2237 68 21 4 chr13 49884840 49885120 -51988049 + AluY SINE Alu 1 285 -26 28 0 0 0 chr13 49885120 49885148 -51988021 + AT_rich Low_complexity Low_complexity 1 28 0 2689 312 99 19 chr13 49885149 49886151 -51987018 + L2 LINE L2 1708 2875 -438 351 0 0 0 chr13 49886151 49886190 -51986979 + (TA)n Simple_repeat Simple_repeat 2 40 0 2689 312 99 19 chr13 49886190 49886666 -51986503 + L2 LINE L2 2875 3312 -1 3066 159 25 0 chr13 49886958 49887486 -51985683 + Tigger1 DNA MER2_type 185 725 -1693 4654 23 2 2 chr13 49887498 49888068 -51985101 - L1PA3 LINE L1 -2928 3218 2649 17879 30 1 0 chr13 49888068 49891008 -51982161 + L1PA3 LINE L1 3226 6169 0 7056 128 25 45 chr13 49891022 49891493 -51981676 + Tigger1 DNA MER2_type 727 1206 -1212 1946 162 0 0 chr13 49891493 49891795 -51981374 - AluSq SINE Alu -11 302 1 7056 128 25 45 chr13 49891795 49892577 -51980592 + Tigger1 DNA MER2_type 1206 1955 -463 1993 137 16 7 chr13 49892706 49893012 -51980157 - MLT2A2 LTR ERVL -144 309 1 15103 104 28 4 chr13 49893012 49895156 -51978013 - HERVL-A2 LTR ERVL 0 5654 3461 235 342 53 9 chr13 49896128 49896242 -51976927 + MIR3 SINE MIR 42 160 -48 300 303 73 0 chr13 49896594 49896703 -51976466 + L2 LINE L2 3148 3264 -8 255 246 0 0 chr13 49898273 49898330 -51974839 - MER69 DNA AcHobo 0 2526 2470 708 205 41 41 chr13 49898540 49898592 -51974577 - MER45A DNA AcHobo -1406 175 124 2224 143 31 14 chr13 49898592 49898949 -51974220 - THE1B LTR MaLR -1 363 1 708 205 41 41 chr13 49898949 49899067 -51974102 - MER45A DNA AcHobo -1456 125 5 509 263 26 116 chr13 49899453 49899685 -51973484 - MLT1I LTR MaLR -1 408 198 436 274 222 13 chr13 49899920 49900150 -51973019 + L2 LINE L2 2315 2592 -722 1661 149 4 0 chr13 49900183 49900445 -51972724 - THE1C LTR MaLR 0 375 113 28 0 0 0 chr13 49902781 49902809 -51970360 + AT_rich Low_complexity Low_complexity 1 28 0 1831 206 59 22 chr13 49903228 49903685 -51969484 + L1MC3 LINE L1 7131 7604 -181 728 186 16 33 chr13 49903837 49904020 -51969149 + L1MC3 LINE L1 7598 7777 -8 1238 262 35 0 chr13 49904929 49905219 -51967950 - MLT1E LTR MaLR -5 588 289 2045 131 7 0 chr13 49908875 49909166 -51964003 - AluSx SINE Alu -16 296 4 1839 158 14 3 chr13 49909400 49909697 -51963472 - AluSx SINE Alu -8 304 5 2691 86 58 21 chr13 49909809 49910241 -51962928 - LTR7 LTR ERV1 -2 448 1 2627 60 45 13 chr13 49910241 49910621 -51962548 - HERVH LTR ERV1 0 7713 7322 1344 140 18 14 chr13 49910619 49910841 -51962328 - HERVH LTR ERV1 -1894 5819 5597 * 4344 141 3 1 chr13 49910838 49911499 -51961670 - HERVH LTR ERV1 -2564 5149 4488 3354 111 2 4 chr13 49911501 49911996 -51961173 - HERVH LTR ERV1 -3720 3993 3500 912 140 7 0 chr13 49911995 49912145 -51961024 - HERVH LTR ERV1 -4423 3290 3140 * 14711 91 29 15 chr13 49912124 49915082 -51958087 - HERVH LTR ERV1 -4718 2995 1 2634 79 63 21 chr13 49915084 49915514 -51957655 - LTR7 LTR ERV1 -2 448 1 347 361 84 29 chr13 49916472 49916710 -51956459 - MIR SINE MIR 0 262 12 766 270 38 0 chr13 49917203 49917414 -51955755 + MER20 DNA MER1_type 1 219 0 309 347 116 31 chr13 49918523 49918748 -51954421 - MIR SINE MIR -13 249 6 2243 119 0 0 chr13 49918748 49919050 -51954119 + AluSx SINE Alu 1 302 -10 256 336 66 22 chr13 49919261 49919398 -51953771 - L2 LINE L2 -845 2469 2327 369 365 77 18 chr13 49919522 49919744 -51953425 + MLT1K LTR MaLR 142 376 -212 187 327 115 35 chr13 49921951 49922064 -51951105 - L2 LINE L2 0 3313 3192 234 224 0 17 chr13 49923465 49923523 -51949646 - LTR33A LTR ERVL -23 500 444 1788 189 3 0 chr13 49925682 49925989 -51947180 + AluJb SINE Alu 1 308 -4 1022 281 187 22 chr13 49926793 49927468 -51945701 + LTR50 LTR ERVL 10 795 0 477 366 71 16 chr13 49927603 49928037 -51945132 + L1M4 LINE L1 3802 4259 -1887 1560 183 148 6 chr13 49928409 49928726 -51944443 + MSTB LTR MaLR 1 362 -64 1181 232 86 11 chr13 49928726 49929006 -51944163 - AluJo SINE Alu -10 302 2 489 100 0 0 chr13 49929006 49929076 -51944093 + MSTB LTR MaLR 357 426 0 321 271 10 10 chr13 49929402 49929498 -51943671 - MLT1I LTR MaLR -6 403 308 288 227 45 0 chr13 49929612 49929678 -51943491 - MLT1I LTR MaLR -244 165 97 725 200 21 0 chr13 49929696 49929866 -51943303 - AluSg/x SINE Alu 0 306 134 384 283 29 21 chr13 49930573 49930713 -51942456 - MLT1I LTR MaLR -7 421 308 3522 109 77 94 chr13 49930877 49931644 -51941525 - LTR1 LTR ERV1 0 785 32 30 0 0 0 chr13 49931780 49931810 -51941359 + AT_rich Low_complexity Low_complexity 1 30 0 939 161 19 12 chr13 49934342 49934504 -51938665 - FRAM SINE Alu -13 163 1 1246 186 16 25 chr13 49934576 49934818 -51938351 - MLT1D LTR MaLR 0 505 266 28 29 0 0 chr13 49934897 49934932 -51938237 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr13 49935370 49935404 -51937765 + AT_rich Low_complexity Low_complexity 1 34 0 1215 225 13 23 chr13 49935449 49935751 -51937418 - AluJo SINE Alu -2 300 2 206 174 22 0 chr13 49935799 49935845 -51937324 + (TA)n Simple_repeat Simple_repeat 2 48 0 35 24 0 0 chr13 49935919 49935961 -51937208 + AT_rich Low_complexity Low_complexity 1 42 0 312 144 39 33 chr13 49935978 49936131 -51937038 + (TA)n Simple_repeat Simple_repeat 2 155 0 1360 221 104 30 chr13 49937269 49937671 -51935498 + MLT1C LTR MaLR 36 467 0 1539 27 0 11 chr13 49937919 49938105 -51935064 - L1PA3 LINE L1 -3 6152 5969 2000 138 7 0 chr13 49938825 49939114 -51934055 - AluSx SINE Alu -21 291 1 31 0 0 0 chr13 49939709 49939740 -51933429 + AT_rich Low_complexity Low_complexity 1 31 0 508 318 132 31 chr13 49939757 49940341 -51932828 - L2 LINE L2 -90 3223 2572 1993 182 44 32 chr13 49940341 49940880 -51932289 - MLT2A2 LTR ERVL -7 547 1 7306 172 31 9 chr13 49940880 49942213 -51930956 - HERVL-A2 LTR ERVL 0 5654 4292 206 167 0 24 chr13 49943036 49943078 -51930091 + T-rich Low_complexity Low_complexity 3 43 0 336 24 0 0 chr13 49943141 49943182 -51929987 + (TA)n Simple_repeat Simple_repeat 2 42 0 462 65 0 0 chr13 49943182 49943244 -51929925 + (GA)n Simple_repeat Simple_repeat 1 62 0 1388 235 101 2 chr13 49943247 49943753 -51929416 - MLT2F LTR ERVL -55 608 5 992 167 25 0 chr13 49944591 49944753 -51928416 + AluSg/x SINE Alu 133 298 -12 1642 137 4 0 chr13 49944879 49945113 -51928056 - AluSq SINE Alu -76 237 3 33 73 0 0 chr13 49946571 49946639 -51926530 + AT_rich Low_complexity Low_complexity 1 68 0 225 313 26 70 chr13 49949186 49949301 -51923868 + MIR SINE MIR 37 146 -62 1339 7 0 0 chr13 49949446 49949593 -51923576 - AluY SINE Alu -10 301 155 1078 151 6 0 chr13 49950433 49950612 -51922557 - L1PB4 LINE L1 -108 6048 5869 22 35 0 0 chr13 49950902 49950931 -51922238 + AT_rich Low_complexity Low_complexity 1 29 0 201 302 0 0 chr13 49951329 49951372 -51921797 - L2 LINE L2 -62 3210 3168 219 103 0 0 chr13 49951501 49951540 -51921629 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1892 127 7 7 chr13 49951543 49951826 -51921343 - AluSx SINE Alu -29 283 1 629 248 48 19 chr13 49951827 49952033 -51921136 - L1ME2 LINE L1 -44 6120 5909 232 184 41 20 chr13 49954108 49954157 -51919012 - MER5A DNA MER1_type -25 164 115 * 314 352 42 14 chr13 49954114 49954256 -51918913 + MER5A DNA MER1_type 43 188 -1 264 298 124 12 chr13 49954505 49954666 -51918503 + L2 LINE L2 28 206 -3108 314 277 0 54 chr13 49954677 49954825 -51918344 + L2 LINE L2 3087 3226 -87 30 59 0 0 chr13 49955163 49955214 -51917955 + AT_rich Low_complexity Low_complexity 1 51 0 901 183 0 33 chr13 49955326 49955506 -51917663 - AluSg/x SINE Alu -3 306 133 212 356 22 22 chr13 49955636 49955771 -51917398 + L2 LINE L2 2685 2819 -495 202 370 74 15 chr13 49955879 49956014 -51917155 + L2 LINE L2 2918 3060 -212 22 0 0 0 chr13 49956264 49956286 -51916883 + AT_rich Low_complexity Low_complexity 1 22 0 2575 10 51 0 chr13 49957930 49958223 -51914946 - AluYa5 SINE Alu -3 308 1 597 290 9 2 chr13 49959125 49959353 -51913816 + AluJb SINE Alu 1 271 -41 746 97 9 0 chr13 49959364 49959477 -51913692 + (GAAAA)n Simple_repeat Simple_repeat 2 115 0 933 210 75 0 chr13 49959623 49959730 -51913439 + MER46A DNA MER2_type 7 105 -2626 2054 139 0 7 chr13 49959730 49960033 -51913136 + AluSx SINE Alu 1 301 -11 933 210 75 0 chr13 49960033 49960139 -51913030 + MER46A DNA MER2_type 105 236 0 806 181 48 27 chr13 49960646 49960834 -51912335 - L1PB4 LINE L1 -1 6155 5964 207 0 0 0 chr13 49960867 49960890 -51912279 + (TA)n Simple_repeat Simple_repeat 2 24 0 26912 101 17 24 chr13 49961056 49965170 -51907999 - HERVL-A2 LTR ERVL -395 5259 1139 479 173 0 0 chr13 49965170 49965280 -51907889 - AluSp/q SINE Alu 0 313 204 26912 101 17 24 chr13 49965280 49966411 -51906758 - HERVL-A2 LTR ERVL -4515 1139 1 1996 172 44 37 chr13 49966411 49966947 -51906222 - MLT2A2 LTR ERVL 0 554 11 4855 93 10 16 chr13 49966948 49967622 -51905547 - LTR8 LTR ERV1 -21 670 1 512 312 98 14 chr13 49967636 49967921 -51905248 - L2 LINE L2 -805 2509 2201 230 330 41 31 chr13 49968399 49968496 -51904673 - MER5B DNA MER1_type -20 158 61 2141 131 3 3 chr13 49969157 49969462 -51903707 - AluSg SINE Alu -5 305 1 21 0 0 0 chr13 49970092 49970113 -51903056 + AT_rich Low_complexity Low_complexity 1 21 0 344 275 27 77 chr13 49970647 49970953 -51902216 - LTR41 LTR ERVL 0 795 494 259 357 71 10 chr13 49971396 49971592 -51901577 - ERVL LTR ERVL -5148 616 409 413 238 28 144 chr13 49971979 49972299 -51900870 - LTR41 LTR ERVL -11 762 480 366 233 185 7 chr13 49972356 49972502 -51900667 - MER53 DNA DNA -17 172 1 307 246 70 70 chr13 49972583 49972725 -51900444 - LTR41 LTR ERVL -629 144 3 23 33 0 0 chr13 49972818 49972848 -51900321 + AT_rich Low_complexity Low_complexity 1 30 0 3343 191 91 15 chr13 49973566 49974322 -51898847 + L1MA9 LINE L1 5461 6274 -38 325 349 63 67 chr13 49974343 49974581 -51898588 + L1MEd LINE L1 130 366 -5753 629 307 116 33 chr13 49974691 49975349 -51897820 + L1MEd LINE L1 443 1154 -4965 21 0 0 0 chr13 49975420 49975441 -51897728 + AT_rich Low_complexity Low_complexity 1 21 0 373 262 116 65 chr13 49975676 49975951 -51897218 + L1MEd LINE L1 2966 3254 -2875 304 253 51 0 chr13 49975974 49976053 -51897116 + MER104 DNA Tc2 19 101 -79 21 71 0 0 chr13 49976107 49976149 -51897020 + AT_rich Low_complexity Low_complexity 1 42 0 7137 185 29 86 chr13 49976344 49979575 -51893594 + L1PA15 LINE L1 3135 6165 0 23 33 0 0 chr13 49979729 49979759 -51893410 + AT_rich Low_complexity Low_complexity 1 30 0 590 298 66 10 chr13 49979791 49979989 -51893180 - MIR SINE MIR -48 214 6 243 61 0 0 chr13 49980834 49980867 -51892302 + (TC)n Simple_repeat Simple_repeat 1 33 0 229 351 128 33 chr13 49981357 49981568 -51891601 - MIR SINE MIR -12 250 20 300 53 0 0 chr13 49982359 49982397 -51890772 + (CA)n Simple_repeat Simple_repeat 2 39 0 206 182 0 36 chr13 49982673 49982728 -51890441 + T-rich Low_complexity Low_complexity 5 57 0 252 171 0 0 chr13 49983299 49983340 -51889829 - MLT1H LTR MaLR -15 534 494 1258 323 110 22 chr13 49983873 49984455 -51888714 - MER115 DNA AcHobo -5 688 56 1646 81 5 0 chr13 49984548 49984771 -51888398 + L1PA8 LINE L1 5949 6172 0 1156 22 0 0 chr13 49985430 49985567 -51887602 - L1PA4 LINE L1 -3 6152 6016 2078 117 50 34 chr13 49985756 49986114 -51887055 - THE1B LTR MaLR 0 364 1 825 265 6 0 chr13 49986590 49986756 -51886413 - MER5A DNA MER1_type 0 189 23 1499 304 13 57 chr13 49986807 49987337 -51885832 + MLT1E LTR MaLR 52 558 -35 29 60 0 0 chr13 49988260 49988310 -51884859 + AT_rich Low_complexity Low_complexity 1 50 0 1513 227 40 5 chr13 49988920 49989295 -51883874 + MLT1B LTR MaLR 1 388 -2 23 0 0 0 chr13 49989698 49989721 -51883448 + AT_rich Low_complexity Low_complexity 1 23 0 374 342 64 57 chr13 49990662 49990943 -51882226 - L2 LINE L2 -4 3268 2986 361 274 82 7 chr13 49991155 49991301 -51881868 + MIR SINE MIR 91 247 -15 837 236 84 70 chr13 49991437 49991806 -51881363 - MLT1A2 LTR MaLR 0 374 1 1101 215 42 0 chr13 49991907 49992144 -51881025 + L1PB4 LINE L1 2 248 -6601 * 1376 234 64 9 chr13 49992142 49992484 -51880685 + L1PB4 LINE L1 87 447 -6402 5417 175 27 4 chr13 49992487 49994140 -51879029 + L1PB4 LINE L1 4804 6494 -364 216 0 0 0 chr13 49994166 49994190 -51878979 + (TA)n Simple_repeat Simple_repeat 2 25 0 1031 170 39 15 chr13 49994202 49994408 -51878761 + L1PB4 LINE L1 6647 6857 -1 970 209 70 0 chr13 49994915 49995021 -51878148 - MER46A DNA MER2_type -2495 236 139 1941 162 0 3 chr13 49995021 49995323 -51877846 - AluSx SINE Alu -11 301 1 970 209 70 0 chr13 49995323 49995431 -51877738 - MER46A DNA MER2_type -2592 139 7 746 97 9 0 chr13 49995577 49995690 -51877479 + (TTTTC)n Simple_repeat Simple_repeat 2 115 0 597 274 15 0 chr13 49995701 49995836 -51877333 - AluJ SINE Alu -41 271 135 405 265 59 0 chr13 49995827 49995929 -51877240 - AluJ SINE Alu -204 108 1 * 596 232 86 56 chr13 49997585 49997783 -51875386 - MIR SINE MIR -37 225 22 379 221 92 28 chr13 49997906 49998078 -51875091 - MLT1G LTR MaLR -2 553 356 684 294 40 78 chr13 49998133 49998471 -51874698 - MLT1G LTR MaLR -221 369 45 2076 158 127 22 chr13 49998471 49998928 -51874241 + MLT1D LTR MaLR 1 505 0 684 294 40 78 chr13 49998928 49998963 -51874206 - MLT1G LTR MaLR -545 45 10 23 0 0 0 chr13 50000090 50000113 -51873056 + AT_rich Low_complexity Low_complexity 1 23 0 263 269 15 0 chr13 50000295 50000362 -51872807 - L2 LINE L2 -1 3271 3204 300 317 69 10 chr13 50000768 50000869 -51872300 - MLT1J LTR MaLR -173 338 232 192 361 16 0 chr13 50001915 50001976 -51871193 - L2 LINE L2 -25 3247 3186 614 320 56 20 chr13 50003231 50003481 -51869688 + MIR SINE MIR 3 261 -1 518 260 127 61 chr13 50004276 50004400 -51868769 + MER20B DNA MER1_type 34 148 -635 1811 204 68 46 chr13 50004400 50004899 -51868270 - MER67D LTR ERV1 -4 510 1 518 260 127 61 chr13 50004899 50004996 -51868173 + MER20B DNA MER1_type 148 237 -546 2304 136 70 22 chr13 50004996 50005408 -51867761 + MSTB1 LTR MaLR 1 432 0 518 260 127 61 chr13 50005408 50005546 -51867623 + MER20B DNA MER1_type 237 418 -365 23 0 0 0 chr13 50005566 50005589 -51867580 + AT_rich Low_complexity Low_complexity 1 23 0 2165 178 124 42 chr13 50005589 50006163 -51867006 - L1MA8 LINE L1 -20 6271 5651 3378 64 0 7 chr13 50006209 50006660 -51866509 - LTR7 LTR ERV1 -2 448 1 2543 83 45 0 chr13 50006660 50007035 -51866134 - HERVH LTR ERV1 0 7713 7322 1398 115 18 31 chr13 50007033 50007259 -51865910 - HERVH LTR ERV1 -1894 5819 5597 * 4232 143 6 1 chr13 50007256 50007915 -51865254 - HERVH LTR ERV1 -2564 5149 4488 3398 103 2 4 chr13 50007917 50008412 -51864757 - HERVH LTR ERV1 -3720 3993 3500 851 162 20 0 chr13 50008411 50008559 -51864610 - HERVH LTR ERV1 -4423 3290 3140 * 10179 106 8 8 chr13 50008553 50010067 -51863102 - HERVH LTR ERV1 -4726 2987 1474 11163 94 17 101 chr13 50010180 50012259 -51860910 - HERVH LTR ERV1 -5807 1906 1 3385 69 0 7 chr13 50012261 50012712 -51860457 - LTR7 LTR ERV1 -2 448 1 1780 174 78 3 chr13 50013086 50013471 -51859698 - L1MA8 LINE L1 -633 5667 5254 1655 166 61 22 chr13 50013476 50013837 -51859332 + THE1C LTR MaLR 1 375 0 8141 193 19 35 chr13 50013837 50015516 -51857653 + THE1C-int LTR MaLR 1 1651 0 1672 164 49 30 chr13 50015518 50015884 -51857285 + THE1C LTR MaLR 3 375 0 1610 214 17 0 chr13 50015884 50016235 -51856934 - L1MA8 LINE L1 -894 5252 4896 478 271 12 6 chr13 50016266 50016432 -51856737 + MER20B DNA MER1_type 481 647 -136 4353 219 3 9 chr13 50016446 50017477 -51855692 - L1 LINE L1 -869 5277 4253 525 272 41 20 chr13 50017481 50017676 -51855493 + MER92B LTR ERV1 391 589 -47 26 30 0 0 chr13 50018853 50018886 -51854283 + AT_rich Low_complexity Low_complexity 1 33 0 27 103 0 0 chr13 50019078 50019175 -51853994 + AT_rich Low_complexity Low_complexity 1 97 0 535 325 68 4 chr13 50021245 50021497 -51851672 + MLT1K LTR MaLR 314 581 -7 344 103 17 0 chr13 50021720 50021778 -51851391 + (CA)n Simple_repeat Simple_repeat 2 60 0 23 0 0 0 chr13 50022845 50022868 -51850301 + AT_rich Low_complexity Low_complexity 1 23 0 1107 291 52 54 chr13 50023803 50024250 -51848919 + MLT2E LTR ERVL 2 447 -181 1231 277 113 46 chr13 50024903 50025250 -51847919 - MLT1H1 LTR MaLR 0 555 233 2055 133 26 32 chr13 50025250 50025627 -51847542 + THE1C LTR MaLR 1 375 0 9405 129 35 40 chr13 50025627 50027215 -51845954 + THE1C-int LTR MaLR 1 1580 0 1803 138 39 62 chr13 50027215 50027599 -51845570 + THE1C LTR MaLR 1 375 0 1231 277 113 46 chr13 50027599 50027769 -51845400 - MLT1H1 LTR MaLR -321 234 1 281 329 36 36 chr13 50027796 50027963 -51845206 - MIR3 SINE MIR -3 205 39 197 271 0 21 chr13 50028047 50028095 -51845074 + L2 LINE L2 3203 3249 -23 382 241 133 108 chr13 50028164 50028405 -51844764 + MIR SINE MIR 13 259 -3 2179 76 0 111 chr13 50028441 50028785 -51844384 - AluY SINE Alu -3 308 3 756 339 99 5 chr13 50028799 50029194 -51843975 - L2 LINE L2 -1882 1432 1001 246 197 61 45 chr13 50030046 50030112 -51843057 - MER5A DNA MER1_type -83 106 40 22 0 0 0 chr13 50031125 50031147 -51842022 + AT_rich Low_complexity Low_complexity 1 22 0 1183 252 56 54 chr13 50031671 50032175 -51840994 - MLT1D LTR MaLR 0 505 1 511 316 150 31 chr13 50032620 50032974 -51840195 - L2 LINE L2 -589 2725 2330 296 325 159 11 chr13 50033065 50033342 -51839827 - L2 LINE L2 -1198 2116 1799 564 254 28 7 chr13 50033485 50033635 -51839534 + MIR SINE MIR 73 224 -38 22 0 0 0 chr13 50033650 50033672 -51839497 + AT_rich Low_complexity Low_complexity 1 22 0 271 338 0 0 chr13 50033987 50034067 -51839102 - MIR SINE MIR 0 262 183 181 56 28 28 chr13 50034119 50034155 -51839014 + (TTTTA)n Simple_repeat Simple_repeat 1 36 0 42237 39 22 1 chr13 50034155 50040158 -51833011 - L1PA3 LINE L1 -24 6131 2 284 347 8 25 chr13 50040179 50040300 -51832869 - MIR SINE MIR -108 154 36 222 270 0 16 chr13 50040413 50040476 -51832693 - MIR SINE MIR -62 146 85 4216 158 75 9 chr13 50040487 50041258 -51831911 - LTR1B LTR ERV1 0 826 5 532 299 9 50 chr13 50042249 50042470 -51830699 - MIR SINE MIR 0 262 51 24 32 0 0 chr13 50042630 50042661 -51830508 + AT_rich Low_complexity Low_complexity 1 31 0 606 176 8 32 chr13 50043989 50044114 -51829055 + MER69 DNA AcHobo 4 125 -2401 261 0 0 0 chr13 50044416 50044445 -51828724 + (TG)n Simple_repeat Simple_repeat 2 30 0 1336 173 58 40 chr13 50044480 50044757 -51828412 - AluJo SINE Alu -30 282 1 24 0 0 0 chr13 50045226 50045250 -51827919 + AT_rich Low_complexity Low_complexity 1 24 0 213 132 0 26 chr13 50046389 50046427 -51826742 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 213 305 37 12 chr13 50046549 50046631 -51826538 - L2 LINE L2 0 3313 3230 333 0 0 0 chr13 50047632 50047669 -51825500 + (TG)n Simple_repeat Simple_repeat 1 37 0 250 137 14 14 chr13 50049535 50049608 -51823561 + (CAAA)n Simple_repeat Simple_repeat 3 75 0 23 0 0 0 chr13 50050521 50050544 -51822625 + AT_rich Low_complexity Low_complexity 1 23 0 264 311 22 0 chr13 50050581 50050671 -51822498 - MER112 DNA MER1_type -150 110 19 2036 128 10 3 chr13 50051608 50051904 -51821265 + AluSq SINE Alu 1 298 -15 745 247 104 0 chr13 50052029 50052211 -51820958 + MIR SINE MIR 32 232 -30 213 39 0 0 chr13 50052758 50052784 -51820385 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2072 173 10 35 chr13 50052798 50053202 -51819967 + MSTD LTR MaLR 1 394 -2 203 325 52 0 chr13 50053845 50053922 -51819247 - L2 LINE L2 -8 3305 3225 201 311 204 10 chr13 50054027 50054130 -51819039 - MIR SINE MIR -17 245 123 196 383 0 0 chr13 50054316 50054376 -51818793 - L2 LINE L2 -10 3262 3203 278 261 29 0 chr13 50055422 50055491 -51817678 - MLT1L LTR MaLR -350 265 195 1732 177 71 37 chr13 50055779 50056130 -51817039 + THE1B LTR MaLR 1 363 -1 11159 113 4 4 chr13 50056131 50057711 -51815458 + THE1B-int LTR MaLR 2 1580 0 1899 161 72 23 chr13 50057711 50058058 -51815111 + THE1B LTR MaLR 1 364 0 2146 139 72 20 chr13 50058089 50058435 -51814734 - THE1B LTR MaLR 0 364 1 29 60 0 0 chr13 50058874 50058924 -51814245 + AT_rich Low_complexity Low_complexity 1 50 0 36 23 0 0 chr13 50058971 50059014 -51814155 + AT_rich Low_complexity Low_complexity 1 43 0 317 217 0 14 chr13 50060249 50060318 -51812851 - MSTB2 LTR MaLR 0 457 390 7776 60 1 4 chr13 50060321 50062093 -51811076 - L1PA6 LINE L1 -6 6148 4377 3683 251 121 82 chr13 50062094 50062218 -51810951 - MSTD-int LTR MaLR -147 1588 1470 1901 171 111 5 chr13 50062218 50062605 -51810564 - MSTA LTR MaLR 0 428 1 3683 251 121 82 chr13 50062605 50064005 -51809164 - MSTD-int LTR MaLR -265 1470 4 1070 215 26 19 chr13 50064009 50064345 -51808824 - MSTD LTR MaLR 0 396 1 6296 128 19 29 chr13 50066183 50067265 -51805904 - MER11C LTR ERVK 0 1071 1 670 310 64 61 chr13 50067808 50068397 -51804772 - L2 LINE L2 0 3272 2668 276 340 164 52 chr13 50068814 50069443 -51803726 - L2 LINE L2 -1017 2297 1599 190 0 32 32 chr13 50069491 50069522 -51803647 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1618 139 4 0 chr13 50069533 50069770 -51803399 - AluSx SINE Alu -25 287 50 1711 179 3 13 chr13 50069944 50070246 -51802923 + AluJb SINE Alu 1 299 -13 206 0 69 0 chr13 50070628 50070657 -51802512 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 216 97 0 0 chr13 50070678 50070709 -51802460 + (CTA)n Simple_repeat Simple_repeat 1 31 0 419 276 9 9 chr13 50070713 50070829 -51802340 - MIR SINE MIR -12 250 135 520 307 64 40 chr13 50072599 50072850 -51800319 + MIR SINE MIR 5 261 -1 21 36 0 0 chr13 50073559 50073587 -51799582 + AT_rich Low_complexity Low_complexity 1 28 0 2026 141 0 0 chr13 50074069 50074367 -51798802 - AluSx SINE Alu -14 298 1 536 253 105 78 chr13 50075039 50075296 -51797873 - L2 LINE L2 0 3313 3050 1397 202 0 24 chr13 50075297 50075589 -51797580 + AluJb SINE Alu 3 287 -25 30 27 0 0 chr13 50075589 50075626 -51797543 + AT_rich Low_complexity Low_complexity 1 37 0 3283 253 37 11 chr13 50075647 50076823 -51796346 + L1ME2 LINE L1 2736 3942 -2204 1406 214 94 10 chr13 50076818 50077334 -51795835 + L1ME2 LINE L1 4938 5496 -678 * 897 233 0 0 chr13 50077335 50077515 -51795654 + AluJb SINE Alu 84 263 -49 1256 226 22 61 chr13 50077541 50078061 -51795108 + L1ME2 LINE L1 5474 5946 -218 * 1318 231 39 12 chr13 50077909 50078246 -51794923 + L1MB4 LINE L1 5798 6143 -37 198 246 0 0 chr13 50078279 50078340 -51794829 + GA-rich Low_complexity Low_complexity 2 62 0 * 241 49 134 12 chr13 50078331 50078413 -51794756 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 1967 284 111 42 chr13 50078415 50079213 -51793956 - L2 LINE L2 -120 3193 2298 432 0 0 0 chr13 50079213 50079261 -51793908 + (TG)n Simple_repeat Simple_repeat 1 48 0 1967 284 111 42 chr13 50079261 50079613 -51793556 - L2 LINE L2 -1015 2298 1972 21 36 0 0 chr13 50080246 50080274 -51792895 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 50081116 50081137 -51792032 + AT_rich Low_complexity Low_complexity 1 21 0 221 163 0 0 chr13 50082774 50082817 -51790352 + T-rich Low_complexity Low_complexity 1 43 0 216 271 0 14 chr13 50083665 50083735 -51789434 + A-rich Low_complexity Low_complexity 3 71 0 243 0 0 0 chr13 50083941 50083968 -51789201 + (A)n Simple_repeat Simple_repeat 1 27 0 860 76 8 0 chr13 50086109 50086227 -51786942 + L1PB3 LINE L1 6036 6154 0 470 318 15 0 chr13 50087617 50087749 -51785420 - L2 LINE L2 0 3272 3139 1554 263 42 9 chr13 50088139 50088573 -51784596 - MER74C LTR ERVL 0 460 13 231 36 0 0 chr13 50088573 50088601 -51784568 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 297 83 0 0 chr13 50088711 50088759 -51784410 - L1MA3 LINE L1 0 6305 6258 26 50 0 0 chr13 50089678 50089718 -51783451 + AT_rich Low_complexity Low_complexity 1 40 0 258 32 0 0 chr13 50091018 50091049 -51782120 + (TC)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr13 50091048 50091071 -51782098 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 205 342 72 33 chr13 50091770 50091922 -51781247 + MIR3 SINE MIR 50 207 -1 1345 151 159 4 chr13 50092050 50092308 -51780861 + AluJb SINE Alu 1 298 -4 475 274 166 6 chr13 50093722 50093879 -51779290 - MER5A DNA MER1_type 0 189 8 321 283 75 19 chr13 50093942 50094048 -51779121 - MER5A DNA MER1_type -5 184 73 498 331 114 7 chr13 50094048 50094338 -51778831 + L2 LINE L2 2020 2340 -974 1940 230 72 41 chr13 50094534 50095073 -51778096 + MLT1E2 LTR MaLR 49 604 -22 1050 306 106 25 chr13 50095125 50095164 -51778005 + L2 LINE L2 2559 2593 -720 2041 128 3 0 chr13 50095164 50095461 -51777708 - AluSx SINE Alu -12 300 3 1050 306 106 25 chr13 50095461 50095541 -51777628 + L2 LINE L2 2593 2665 -648 2269 196 34 20 chr13 50095541 50096036 -51777133 - MLT1D LTR MaLR -3 502 1 1050 306 106 25 chr13 50096036 50096412 -51776757 + L2 LINE L2 2665 3123 -190 1947 154 0 0 chr13 50096412 50096705 -51776464 - AluSx SINE Alu -19 293 1 1050 306 106 25 chr13 50096705 50096895 -51776274 + L2 LINE L2 3123 3296 -17 21 0 0 0 chr13 50097053 50097074 -51776095 + AT_rich Low_complexity Low_complexity 1 21 0 1589 157 81 31 chr13 50098659 50099016 -51774153 - THE1C LTR MaLR 0 375 1 529 281 33 24 chr13 50099174 50099384 -51773785 - LTR33 LTR ERVL -8 513 302 21 0 0 0 chr13 50101652 50101673 -51771496 + AT_rich Low_complexity Low_complexity 1 21 0 211 161 18 54 chr13 50103326 50103382 -51769787 + T-rich Low_complexity Low_complexity 2 55 0 356 320 102 0 chr13 50104036 50104164 -51769005 - MIR3 SINE MIR -32 176 36 189 132 0 0 chr13 50106081 50106119 -51767050 + (A)n Simple_repeat Simple_repeat 1 38 0 1799 93 15 7 chr13 50106124 50106394 -51766775 - AluY SINE Alu -34 277 6 200 325 47 59 chr13 50106866 50107035 -51766134 - L3b LINE CR1 -140 1443 1277 268 323 53 42 chr13 50107276 50107465 -51765704 + MIR SINE MIR 14 204 -58 27 49 0 0 chr13 50108131 50108172 -51764997 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr13 50110322 50110347 -51762822 + AT_rich Low_complexity Low_complexity 1 25 0 201 154 0 0 chr13 50110790 50110829 -51762340 + (TG)n Simple_repeat Simple_repeat 2 40 0 340 298 122 0 chr13 50111314 50111445 -51761724 - L2 LINE L2 -1 3312 3166 240 35 0 0 chr13 50112492 50112521 -51760648 + (TA)n Simple_repeat Simple_repeat 1 29 0 1364 169 138 65 chr13 50113482 50113607 -51759562 + MLT2D LTR ERVL 1 115 -299 2557 114 75 4 chr13 50113607 50114061 -51759108 - L1MA4 LINE L1 -9 6291 5806 1364 169 138 65 chr13 50114061 50114320 -51758849 + MLT2D LTR ERVL 115 413 -1 372 322 81 24 chr13 50115149 50115360 -51757809 - MIR SINE MIR -8 254 32 186 178 0 67 chr13 50117256 50117281 -51755888 - MER5A DNA MER1_type -27 162 140 225 0 0 0 chr13 50117281 50117306 -51755863 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 186 178 0 67 chr13 50117306 50117325 -51755844 - MER5A DNA MER1_type -49 140 121 214 363 55 0 chr13 50117724 50117815 -51755354 + MIR SINE MIR 79 174 -88 263 188 104 42 chr13 50120330 50120426 -51752743 - MIR SINE MIR -43 219 118 200 125 0 25 chr13 50120783 50120823 -51752346 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1259 177 4 13 chr13 50120839 50121076 -51752093 - AluJo SINE Alu -77 235 1 353 275 150 31 chr13 50121132 50121292 -51751877 + MER5A DNA MER1_type 11 189 0 724 279 92 25 chr13 50122085 50122295 -51750874 - MIR SINE MIR -3 259 30 1489 164 103 0 chr13 50122295 50122458 -51750711 - AluSx SINE Alu -2 310 165 415 0 0 35 chr13 50122458 50122515 -51750654 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 1489 164 103 0 chr13 50122515 50122632 -51750537 - AluSx SINE Alu -147 165 1 724 279 92 25 chr13 50122632 50122661 -51750508 - MIR SINE MIR -232 30 4 1840 222 47 69 chr13 50122875 50123511 -51749658 - MLT1E2 LTR MaLR 0 626 5 2097 100 55 0 chr13 50123822 50124113 -51749056 - AluSq SINE Alu -6 307 1 1293 142 46 5 chr13 50128079 50128297 -51744872 - AluSg/x SINE Alu -8 302 76 22 0 0 0 chr13 50128359 50128381 -51744788 + AT_rich Low_complexity Low_complexity 1 22 0 206 304 101 0 chr13 50128438 50128517 -51744652 + L2 LINE L2 1827 1913 -1401 267 156 0 0 chr13 50128895 50128940 -51744229 + L2 LINE L2 3269 3313 0 193 393 61 10 chr13 50129713 50130008 -51743161 + L2 LINE L2 2167 2476 -838 439 283 96 61 chr13 50130009 50130239 -51742930 + L2 LINE L2 1970 2207 -1107 756 259 90 22 chr13 50130240 50130518 -51742651 + L2 LINE L2 2396 2692 -622 325 258 38 38 chr13 50130777 50130909 -51742260 - MIR SINE MIR -3 259 128 21 36 0 0 chr13 50131163 50131191 -51741978 + AT_rich Low_complexity Low_complexity 1 28 0 335 317 120 6 chr13 50131245 50131428 -51741741 - MIR SINE MIR -10 252 49 2118 136 13 0 chr13 50131512 50131821 -51741348 - AluSq SINE Alu 0 313 1 1282 204 18 83 chr13 50132037 50132434 -51740735 - MLT1A2 LTR MaLR 0 374 4 21 0 0 0 chr13 50134343 50134364 -51738805 + AT_rich Low_complexity Low_complexity 1 21 0 527 186 65 73 chr13 50134616 50134740 -51738429 - MER5A DNA MER1_type -53 136 14 2746 206 47 37 chr13 50134901 50135546 -51737623 - MER82 DNA MER2_type 0 653 3 22 56 0 0 chr13 50135689 50135725 -51737444 + AT_rich Low_complexity Low_complexity 1 36 0 391 355 21 21 chr13 50136483 50136669 -51736500 - MIR SINE MIR -50 212 27 22 35 0 0 chr13 50138155 50138184 -51734985 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 50141048 50141083 -51732086 + AT_rich Low_complexity Low_complexity 1 35 0 204 228 0 0 chr13 50142324 50142381 -51730788 + CT-rich Low_complexity Low_complexity 2 58 0 2059 132 7 0 chr13 50142586 50142882 -51730287 + AluSx SINE Alu 1 298 -14 2198 119 0 0 chr13 50143562 50143873 -51729296 + AluSq SINE Alu 3 313 0 286 299 30 0 chr13 50145452 50145519 -51727650 + L2 LINE L2 3204 3272 0 204 328 0 0 chr13 50145520 50145578 -51727591 + CT-rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr13 50146259 50146280 -51726889 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 50146762 50146791 -51726378 + AT_rich Low_complexity Low_complexity 1 29 0 264 224 0 0 chr13 50148246 50148313 -51724856 + (TA)n Simple_repeat Simple_repeat 2 68 0 2012 125 65 29 chr13 50148366 50148717 -51724452 - THE1B LTR MaLR 0 364 1 1743 182 56 0 chr13 50149741 50150082 -51723087 + MER67D LTR ERV1 4 363 -151 223 182 0 0 chr13 50150153 50150197 -51722972 + T-rich Low_complexity Low_complexity 1 44 0 1571 210 0 10 chr13 50150206 50150506 -51722663 - AluJo SINE Alu -15 297 1 289 181 0 28 chr13 50150507 50150579 -51722590 + MER31B LTR ERV1 395 464 -2 217 343 39 54 chr13 50151756 50151960 -51721209 - L2 LINE L2 0 3313 3113 2424 199 21 54 chr13 50152595 50153209 -51719960 + L1MB2 LINE L1 5574 6167 -4 228 267 89 44 chr13 50153490 50153580 -51719589 + MIR SINE MIR 14 107 -155 263 302 137 22 chr13 50154179 50154318 -51718851 - MIR SINE MIR -41 221 67 238 270 126 27 chr13 50154553 50154664 -51718505 - MIR3 SINE MIR -11 197 76 911 189 18 0 chr13 50156938 50157107 -51716062 - MER5A DNA MER1_type 0 189 18 28 0 0 0 chr13 50159089 50159117 -51714052 + AT_rich Low_complexity Low_complexity 1 28 0 2588 40 0 0 chr13 50160231 50160531 -51712638 - AluY SINE Alu -6 305 6 2042 131 13 3 chr13 50162443 50162748 -51710421 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 50163744 50163765 -51709404 + AT_rich Low_complexity Low_complexity 1 21 0 784 243 38 21 chr13 50164105 50164344 -51708825 - L1MA9 LINE L1 -30 6282 6040 310 224 24 12 chr13 50164454 50164539 -51708630 - L1MA9 LINE L1 -192 6120 6035 1058 171 35 70 chr13 50164552 50164569 -51708600 - L1MA9 LINE L1 -256 6056 6040 1976 125 0 10 chr13 50164569 50164857 -51708312 - AluSx SINE Alu -27 285 1 1058 171 35 70 chr13 50164857 50165126 -51708043 - L1MA9 LINE L1 -272 6040 5780 23 0 0 0 chr13 50165545 50165568 -51707601 + AT_rich Low_complexity Low_complexity 1 23 0 1717 167 85 39 chr13 50167252 50167665 -51705504 + MSTB1 LTR MaLR 1 432 0 183 295 103 0 chr13 50167736 50167814 -51705355 + L2 LINE L2 3226 3311 -2 2052 132 7 0 chr13 50170340 50170635 -51702534 + AluSx SINE Alu 1 297 -15 264 59 0 0 chr13 50171762 50171796 -51701373 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr13 50173495 50173531 -51699638 + AT_rich Low_complexity Low_complexity 1 36 0 194 336 149 0 chr13 50173678 50173785 -51699384 + L2 LINE L2 3148 3270 -2 2102 104 7 0 chr13 50175211 50175534 -51697635 + AluSg SINE Alu 1 310 0 183 80 0 0 chr13 50176467 50176492 -51696677 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 196 356 30 10 chr13 50176603 50176704 -51696465 + MIR SINE MIR 143 245 -17 1559 216 0 0 chr13 50177029 50177307 -51695862 + AluJb SINE Alu 3 280 -32 297 221 0 0 chr13 50177308 50177376 -51695793 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 234 289 0 11 chr13 50177376 50177466 -51695703 + L1MC4 LINE L1 6614 6702 -1340 217 185 31 0 chr13 50177494 50177559 -51695610 + (TA)n Simple_repeat Simple_repeat 1 67 0 27 29 0 0 chr13 50177831 50177865 -51695304 + AT_rich Low_complexity Low_complexity 1 34 0 235 343 9 37 chr13 50177938 50178046 -51695123 - MIR SINE MIR -64 144 40 186 333 60 17 chr13 50178981 50179098 -51694071 + MIR SINE MIR 124 245 -17 198 174 0 0 chr13 50179593 50179639 -51693530 + A-rich Low_complexity Low_complexity 1 46 0 269 160 0 0 chr13 50179692 50179742 -51693427 + Alu SINE Alu 253 302 0 2239 115 5 49 chr13 50181055 50181445 -51691724 + THE1C LTR MaLR 1 373 -2 277 300 89 47 chr13 50181902 50182092 -51691077 + MLT1L LTR MaLR 201 398 -217 25 0 0 0 chr13 50182318 50182343 -51690826 + AT_rich Low_complexity Low_complexity 1 25 0 193 279 163 23 chr13 50182556 50182642 -51690527 - L3 LINE CR1 -744 833 736 1485 155 15 42 chr13 50183037 50183301 -51689868 - AluJb SINE Alu -20 292 36 546 222 52 0 chr13 50183428 50183563 -51689606 - Charlie1 DNA MER1_type 0 2761 2620 * 622 220 143 24 chr13 50183547 50183756 -51689413 - Charlie1 DNA MER1_type -2522 239 6 21 0 0 0 chr13 50184429 50184450 -51688719 + AT_rich Low_complexity Low_complexity 1 21 0 435 317 0 0 chr13 50185682 50185805 -51687364 - MER94 DNA DNA -3 131 9 309 284 43 49 chr13 50186090 50186252 -51686917 + MIR SINE MIR 25 185 -77 213 318 57 11 chr13 50186554 50186642 -51686527 + L2 LINE L2 3176 3267 -46 23 0 0 0 chr13 50186701 50186724 -51686445 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr13 50187663 50187697 -51685472 + AT_rich Low_complexity Low_complexity 1 34 0 2168 4 0 0 chr13 50187941 50188177 -51684992 - AluYb8 SINE Alu -11 307 72 1258 196 8 12 chr13 50191213 50191453 -51681716 - AluJb SINE Alu -48 264 26 527 66 13 0 chr13 50191512 50191588 -51681581 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 876 200 18 24 chr13 50192092 50192262 -51680907 - AluJb SINE Alu -48 264 96 205 287 148 20 chr13 50192485 50192586 -51680583 - L3b LINE CR1 -263 1320 1207 2193 92 0 10 chr13 50193299 50193622 -51679547 + AluY SINE Alu 1 311 0 5208 113 51 9 chr13 50196890 50196927 -51676242 + L1P LINE L1 2876 2910 -3236 6288 75 9 0 chr13 50196927 50198404 -51674765 - L1PA7 LINE L1 -5 6149 4645 5208 113 51 9 chr13 50198404 50199242 -51673927 + L1P LINE L1 2910 3788 -2358 24929 112 11 34 chr13 50199256 50204208 -51668961 + L1P3 LINE L1 9 4942 -1519 203 360 73 0 chr13 50204224 50204360 -51668809 + L3 LINE CR1 1357 1502 -75 22 0 0 0 chr13 50204649 50204671 -51668498 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 50206488 50206511 -51666658 + AT_rich Low_complexity Low_complexity 1 23 0 320 276 114 0 chr13 50208452 50208557 -51664612 + MIR SINE MIR 88 204 -58 22 0 0 0 chr13 50209325 50209347 -51663822 + AT_rich Low_complexity Low_complexity 1 22 0 254 232 24 61 chr13 50210420 50210502 -51662667 - L2 LINE L2 0 3272 3194 480 336 53 32 chr13 50211139 50211386 -51661783 - MIR SINE MIR -10 252 1 21 0 0 0 chr13 50213697 50213718 -51659451 + AT_rich Low_complexity Low_complexity 1 21 0 349 327 105 13 chr13 50214322 50214475 -51658694 + L2 LINE L2 3143 3309 -4 24 0 0 0 chr13 50215991 50216015 -51657154 + AT_rich Low_complexity Low_complexity 1 24 0 987 223 62 15 chr13 50216027 50216354 -51656815 + MSTD LTR MaLR 1 389 -7 2365 56 7 0 chr13 50217035 50217323 -51655846 + AluY SINE Alu 14 303 -8 1169 217 36 26 chr13 50217436 50217745 -51655424 + L1ME3A LINE L1 5384 5695 -475 335 248 67 0 chr13 50217765 50217848 -51655321 + L1ME3A LINE L1 6021 6114 -56 2125 132 0 0 chr13 50217848 50218144 -51655025 + AluSx SINE Alu 1 296 -16 335 248 67 0 chr13 50218144 50218165 -51655004 + L1ME3A LINE L1 6114 6132 -38 25 31 0 0 chr13 50218195 50218227 -51654942 + AT_rich Low_complexity Low_complexity 1 32 0 438 312 63 10 chr13 50218398 50218603 -51654566 + MLT1J2 LTR MaLR 3 218 -232 296 232 85 0 chr13 50218673 50218755 -51654414 + MLT1J2 LTR MaLR 344 432 -18 189 381 0 0 chr13 50219140 50219224 -51653945 + MIR SINE MIR 69 152 -110 788 177 44 25 chr13 50219254 50219457 -51653712 + L1MA9 LINE L1 6067 6273 -39 29 0 0 0 chr13 50220408 50220437 -51652732 + AT_rich Low_complexity Low_complexity 1 29 0 191 256 105 23 chr13 50220489 50220575 -51652594 - MIR SINE MIR -74 134 42 181 284 12 74 chr13 50220764 50220845 -51652324 + L2 LINE L2 3173 3248 -24 27 62 0 0 chr13 50221580 50221628 -51651541 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr13 50222460 50222486 -51650683 + AT_rich Low_complexity Low_complexity 1 26 0 2175 110 0 25 chr13 50224437 50224756 -51648413 - AluSx SINE Alu -1 311 1 271 72 108 14 chr13 50224939 50225078 -51648091 + (TA)n Simple_repeat Simple_repeat 1 152 0 729 167 29 11 chr13 50225326 50225776 -51647393 + (TA)n Simple_repeat Simple_repeat 1 458 0 200 191 0 24 chr13 50226007 50226049 -51647120 + (TG)n Simple_repeat Simple_repeat 1 41 0 21 57 0 0 chr13 50227382 50227417 -51645752 + AT_rich Low_complexity Low_complexity 1 35 0 186 300 33 0 chr13 50228281 50228341 -51644828 + L3 LINE CR1 1052 1113 -464 271 304 44 105 chr13 50229310 50229491 -51643678 + MIR SINE MIR 15 184 -78 2339 51 3 10 chr13 50230634 50230929 -51642240 + AluY SINE Alu 1 293 -18 1127 37 0 0 chr13 50230929 50231065 -51642104 + L1PA5 LINE L1 6012 6147 -7 23 54 0 0 chr13 50231069 50231106 -51642063 + AT_rich Low_complexity Low_complexity 1 37 0 338 164 15 15 chr13 50231613 50231680 -51641489 - MER67D LTR ERV1 0 514 448 727 187 0 0 chr13 50231680 50231803 -51641366 + FLAM_C SINE Alu 1 123 -20 180 0 0 0 chr13 50231804 50231824 -51641345 + (GAA)n Simple_repeat Simple_repeat 2 21 0 1160 168 50 185 chr13 50231825 50232306 -51640863 - MER67D LTR ERV1 -78 436 21 233 362 35 0 chr13 50232418 50232534 -51640635 - MIR SINE MIR -25 237 118 1041 169 11 0 chr13 50233003 50233186 -51639983 - L1MB5 LINE L1 -8 6166 5982 346 255 283 0 chr13 50233265 50233410 -51639759 - MIR SINE MIR -10 252 67 1976 132 0 0 chr13 50233410 50233744 -51639425 + AluY SINE Alu 1 311 0 677 150 0 9 chr13 50235484 50235597 -51637572 + FLAM_A SINE Alu 1 112 -30 2241 103 0 10 chr13 50235597 50235898 -51637271 + THE1B LTR MaLR 2 299 -65 1905 110 113 6 chr13 50235898 50236224 -51636945 + THE1B LTR MaLR 1 361 -3 21 0 0 0 chr13 50236230 50236251 -51636918 + AT_rich Low_complexity Low_complexity 1 21 0 269 333 45 9 chr13 50236709 50236820 -51636349 - L2 LINE L2 -7 3306 3192 497 250 140 10 chr13 50236824 50237015 -51636154 - MLT1H LTR MaLR 0 549 339 314 224 15 0 chr13 50237019 50237086 -51636083 - MLT1H LTR MaLR -418 131 64 197 286 185 8 chr13 50237712 50237831 -51635338 - MIR SINE MIR -42 220 81 264 326 0 11 chr13 50238021 50238110 -51635059 + MER5A DNA MER1_type 63 150 -39 24 0 0 0 chr13 50238336 50238360 -51634809 + AT_rich Low_complexity Low_complexity 1 24 0 449 230 145 25 chr13 50239140 50239340 -51633829 - Charlie5 DNA MER1_type -2372 240 17 1221 70 0 6 chr13 50239581 50239738 -51633431 + THE1B LTR MaLR 209 364 0 3788 128 204 121 chr13 50239947 50241237 -51631932 - pTR5 LTR ERV1 0 2438 172 2141 91 0 0 chr13 50242216 50242492 -51630677 - AluY SINE Alu -35 276 1 231 304 87 7 chr13 50242528 50242666 -51630503 + MIR SINE MIR 98 246 -16 1549 170 10 16 chr13 50243834 50244140 -51629029 - AluJo SINE Alu -8 304 1 22 94 0 0 chr13 50245275 50245339 -51627830 + AT_rich Low_complexity Low_complexity 1 64 0 368 233 194 16 chr13 50245472 50245630 -51627539 + MLT1J2 LTR MaLR 67 237 -172 444 302 78 16 chr13 50245760 50246015 -51627154 + L1MEc LINE L1 709 979 -5417 318 93 70 0 chr13 50246034 50246120 -51627049 + (TA)n Simple_repeat Simple_repeat 1 92 0 2240 84 3 0 chr13 50246813 50247121 -51626048 - AluSp SINE Alu 0 309 1 265 350 0 0 chr13 50248679 50248759 -51624410 - L2 LINE L2 -4 3268 3189 2574 118 11 3 chr13 50248860 50249232 -51623937 + THE1C LTR MaLR 1 375 0 695 235 135 5 chr13 50251247 50251447 -51621722 - MLT1J LTR MaLR 0 511 286 28 79 0 0 chr13 50251660 50251723 -51621446 + AT_rich Low_complexity Low_complexity 1 63 0 509 305 26 13 chr13 50252574 50252725 -51620444 - MIR SINE MIR -98 164 12 219 36 0 0 chr13 50252930 50252958 -51620211 + (TATG)n Simple_repeat Simple_repeat 2 29 0 240 289 42 14 chr13 50253359 50253501 -51619668 - L1MC5 LINE L1 -33 7928 7783 183 100 0 0 chr13 50253505 50253535 -51619634 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 301 297 53 56 chr13 50253561 50253827 -51619342 - L1MC5 LINE L1 -284 7677 7413 21 57 0 0 chr13 50253831 50253866 -51619303 + AT_rich Low_complexity Low_complexity 1 35 0 235 231 0 0 chr13 50254796 50254848 -51618321 + L2 LINE L2 3262 3313 0 235 110 37 24 chr13 50256015 50256097 -51617072 + (TA)n Simple_repeat Simple_repeat 2 84 0 325 231 73 62 chr13 50256416 50256581 -51616588 - MLT1K LTR MaLR -313 302 150 303 28 0 0 chr13 50257109 50257145 -51616024 + (CA)n Simple_repeat Simple_repeat 1 36 0 964 101 0 0 chr13 50258409 50258547 -51614622 + L1PA6 LINE L1 6014 6151 -3 1637 170 35 3 chr13 50258919 50259201 -51613968 + AluJo SINE Alu 1 291 -21 28 0 0 0 chr13 50259555 50259583 -51613586 + AT_rich Low_complexity Low_complexity 1 28 0 331 224 90 45 chr13 50259619 50259775 -51613394 - L1P LINE L1 -1100 5046 4884 1034 188 0 0 chr13 50261874 50262044 -51611125 - AluJo/FRAM SINE Alu -9 303 134 1714 162 0 64 chr13 50262044 50262371 -51610798 - AluJb SINE Alu -6 306 1 328 194 16 3 chr13 50262486 50262562 -51610607 + AluS SINE Alu 1 60 -243 394 279 47 8 chr13 50263413 50263542 -51609627 - MIR SINE MIR -50 212 79 3894 130 59 51 chr13 50263835 50264614 -51608555 - LTR1 LTR ERV1 0 785 1 394 308 71 28 chr13 50265948 50266130 -51607039 + MLT1L LTR MaLR 348 537 -78 252 86 0 0 chr13 50266334 50266369 -51606800 + (TG)n Simple_repeat Simple_repeat 2 36 0 5116 124 12 24 chr13 50266647 50266986 -51606183 - Tigger1 DNA MER2_type -2 2416 2074 5832 51 11 0 chr13 50266986 50267713 -51605456 - L1PA7 LINE L1 0 6154 5420 5116 124 12 24 chr13 50267713 50268194 -51604975 - Tigger1 DNA MER2_type -344 2074 1606 634 126 0 0 chr13 50268197 50268292 -51604877 - LTR12 LTR ERV1 -7 707 613 382 211 11 0 chr13 50268292 50268387 -51604782 - LTR30 LTR ERV1 -79 643 548 1657 125 69 10 chr13 50268387 50268718 -51604451 - LTR12 LTR ERV1 -409 2029 57 266 211 0 0 chr13 50268722 50268774 -51604395 - LTR30 LTR ERV1 -670 52 1 8370 162 10 3 chr13 50268775 50270379 -51602790 - Tigger1 DNA MER2_type -806 1612 1 605 296 65 6 chr13 50270587 50270833 -51602336 - MIR SINE MIR 0 262 9 622 246 91 32 chr13 50270930 50271117 -51602052 - MIR SINE MIR -48 214 17 193 273 106 0 chr13 50272998 50273064 -51600105 - MIR SINE MIR -5 257 185 29 0 0 0 chr13 50275267 50275296 -51597873 + AT_rich Low_complexity Low_complexity 1 29 0 1515 176 25 18 chr13 50275728 50276012 -51597157 - AluJb SINE Alu -26 286 1 2214 116 0 3 chr13 50276060 50276371 -51596798 - AluSx SINE Alu -2 310 1 770 291 36 20 chr13 50276505 50276756 -51596413 + MIR SINE MIR 7 261 -1 311 329 65 30 chr13 50277316 50277547 -51595622 - MIR SINE MIR -14 248 10 35 0 0 0 chr13 50278633 50278668 -51594501 + AT_rich Low_complexity Low_complexity 1 35 0 553 185 7 7 chr13 50278782 50278917 -51594252 + CT-rich Low_complexity Low_complexity 4 138 0 782 262 173 33 chr13 50279849 50280299 -51592870 - L2 LINE L2 -578 2736 2224 997 336 119 2 chr13 50280331 50280884 -51592285 - L2 LINE L2 -1372 1942 1325 214 297 77 11 chr13 50281448 50281539 -51591630 + MER5A DNA MER1_type 7 103 -86 206 258 32 0 chr13 50282081 50282143 -51591026 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr13 50282513 50282534 -51590635 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 50284293 50284336 -51588833 + AT_rich Low_complexity Low_complexity 1 43 0 330 229 0 107 chr13 50284627 50284749 -51588420 + MER5A DNA MER1_type 4 112 -77 215 156 44 0 chr13 50284803 50284848 -51588321 + CT-rich Low_complexity Low_complexity 2 48 0 698 275 17 17 chr13 50285609 50285787 -51587382 + MER5B DNA MER1_type 1 178 0 465 259 99 0 chr13 50286157 50286288 -51586881 + MER63A DNA MER1_type 58 201 -9 220 303 11 34 chr13 50287570 50287659 -51585510 + MIR SINE MIR 60 146 -116 774 231 10 0 chr13 50290582 50290749 -51582420 - MER5B DNA MER1_type 0 178 18 1372 217 7 27 chr13 50291737 50292037 -51581132 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr13 50292928 50292956 -51580213 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr13 50292991 50293027 -51580142 + AT_rich Low_complexity Low_complexity 1 36 0 511 136 0 57 chr13 50293388 50293476 -51579693 + AluS SINE Alu 2 84 -229 21 0 0 0 chr13 50294415 50294436 -51578733 + AT_rich Low_complexity Low_complexity 1 21 0 453 141 0 0 chr13 50295285 50295370 -51577799 + (TGGA)n Simple_repeat Simple_repeat 2 86 0 206 385 41 41 chr13 50295680 50295898 -51577271 - L2 LINE L2 -674 2640 2423 330 340 0 0 chr13 50296573 50296673 -51576496 + MIR SINE MIR 41 140 -68 1012 59 7 7 chr13 50297130 50297266 -51575903 - L1PA5 LINE L1 -7 6147 6012 2339 51 3 10 chr13 50297266 50297561 -51575608 - AluY SINE Alu -18 293 1 271 304 44 105 chr13 50298704 50298885 -51574284 - MIR SINE MIR -78 184 15 186 300 33 0 chr13 50299850 50299910 -51573259 - L3 LINE CR1 -464 1113 1052 21 57 0 0 chr13 50300774 50300809 -51572360 + AT_rich Low_complexity Low_complexity 1 35 0 200 191 0 24 chr13 50302142 50302184 -51570985 + (CA)n Simple_repeat Simple_repeat 1 41 0 729 158 44 2 chr13 50302468 50302932 -51570237 + (TA)n Simple_repeat Simple_repeat 1 483 0 385 175 25 0 chr13 50303045 50303125 -51570044 - L1MA9 LINE L1 -3 6309 6228 194 92 71 31 chr13 50303127 50303225 -51569944 + (TATAA)n Simple_repeat Simple_repeat 5 106 0 781 151 8 0 chr13 50303230 50303349 -51569820 + THE1A LTR MaLR 235 354 -1 5692 119 7 2 chr13 50303350 50304180 -51568989 + THE1A-int LTR MaLR 2 835 -745 181 328 0 0 chr13 50305454 50305518 -51567651 - MIR SINE MIR 0 262 199 186 71 0 0 chr13 50305529 50305557 -51567612 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 622 173 5 0 chr13 50305627 50305801 -51567368 - L1MA6 LINE L1 -424 5876 5615 2081 175 70 2 chr13 50305952 50306351 -51566818 - MSTB LTR MaLR 0 426 1 198 273 91 0 chr13 50307670 50307747 -51565422 - MIR SINE MIR -91 171 88 192 200 0 0 chr13 50307915 50307955 -51565214 + (CA)n Simple_repeat Simple_repeat 1 40 0 241 237 34 0 chr13 50308655 50308714 -51564455 + T-rich Low_complexity Low_complexity 2 62 0 534 355 85 37 chr13 50309364 50309890 -51563279 + L2 LINE L2 1152 1716 -1598 257 26 0 51 chr13 50309890 50309929 -51563240 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 534 355 85 37 chr13 50309929 50310047 -51563122 + L2 LINE L2 1716 1827 -1487 214 391 9 43 chr13 50310354 50310469 -51562700 + L2 LINE L2 3142 3252 -20 303 49 0 0 chr13 50310868 50310909 -51562260 + (TC)n Simple_repeat Simple_repeat 2 42 0 2054 130 0 0 chr13 50312096 50312381 -51560788 + AluSx SINE Alu 1 285 -27 219 264 110 0 chr13 50316095 50316186 -51556983 + MIR3 SINE MIR 103 203 -5 1444 189 0 55 chr13 50316197 50316504 -51556665 - AluJo SINE Alu -9 303 14 1122 131 63 0 chr13 50316752 50316943 -51556226 - AluSc SINE Alu -7 302 100 25 51 0 0 chr13 50317595 50317634 -51555535 + AT_rich Low_complexity Low_complexity 1 39 0 1491 206 48 20 chr13 50318491 50318846 -51554323 - MLT1A1 LTR MaLR 0 365 1 257 348 0 22 chr13 50320459 50320551 -51552618 - MIR SINE MIR -100 108 19 1821 162 6 19 chr13 50321947 50322262 -51550907 - AluJb SINE Alu 0 312 2 1010 258 72 70 chr13 50323430 50323887 -51549282 - MLT1C LTR MaLR -9 458 1 1816 207 11 5 chr13 50324367 50324729 -51548440 + MLT2C1 LTR ERVL 1 480 -40 311 214 31 51 chr13 50324764 50324862 -51548307 - L1MC4 LINE L1 -1337 6705 6610 23 33 0 0 chr13 50324863 50324893 -51548276 + AT_rich Low_complexity Low_complexity 1 30 0 269 130 0 0 chr13 50324893 50324939 -51548230 + MLT2C1 LTR ERVL 465 510 -10 2089 100 14 7 chr13 50325377 50325667 -51547502 + AluSg SINE Alu 1 292 -18 1263 210 137 91 chr13 50326511 50327047 -51546122 - MER66A LTR ERV1 0 478 110 6443 162 21 21 chr13 50327597 50327887 -51545282 + Tigger3b DNA MER2_type 1 290 -2738 2117 97 17 13 chr13 50327887 50328226 -51544943 - AluY SINE Alu 0 340 1 6443 162 21 21 chr13 50328226 50329164 -51544005 + Tigger3b DNA MER2_type 289 1231 0 212 160 66 0 chr13 50329935 50330041 -51543128 + (TTATA)n Simple_repeat Simple_repeat 1 113 0 402 324 28 16 chr13 50330931 50331113 -51542056 + MIR SINE MIR 79 262 0 544 282 83 66 chr13 50331260 50331442 -51541727 + MIR3 SINE MIR 54 237 0 310 286 11 11 chr13 50333519 50333610 -51539559 + MIR SINE MIR 172 262 0 24 0 0 0 chr13 50334189 50334213 -51538956 + AT_rich Low_complexity Low_complexity 1 24 0 249 183 0 0 chr13 50335099 50335159 -51538010 + CT-rich Low_complexity Low_complexity 2 61 0 224 268 92 56 chr13 50335170 50335312 -51537857 + MIR SINE MIR 116 262 0 1126 30 0 0 chr13 50335324 50335459 -51537710 + AluYa5/8 SINE Alu 175 309 -1 27 29 0 0 chr13 50335685 50335719 -51537450 + AT_rich Low_complexity Low_complexity 1 34 0 25 102 0 0 chr13 50336017 50336105 -51537064 + AT_rich Low_complexity Low_complexity 1 88 0 21 0 0 0 chr13 50336629 50336650 -51536519 + AT_rich Low_complexity Low_complexity 1 21 0 2026 137 0 0 chr13 50340911 50341204 -51531965 + AluSq SINE Alu 1 293 -20 240 330 51 17 chr13 50341335 50341453 -51531716 + L2 LINE L2 2385 2506 -808 269 372 97 5 chr13 50341541 50341737 -51531432 + L2 LINE L2 2835 3048 -224 22 56 0 0 chr13 50342230 50342266 -51530903 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr13 50342923 50342954 -51530215 + AT_rich Low_complexity Low_complexity 1 31 0 27 87 0 0 chr13 50343415 50343484 -51529685 + AT_rich Low_complexity Low_complexity 1 69 0 250 227 40 13 chr13 50345143 50345218 -51527951 + L1MB8 LINE L1 6101 6177 -1 1773 146 25 0 chr13 50346791 50347092 -51526077 + AluJb SINE Alu 2 309 0 21 36 0 0 chr13 50347633 50347661 -51525508 + AT_rich Low_complexity Low_complexity 1 28 0 1963 138 0 7 chr13 50347764 50348068 -51525101 + AluY SINE Alu 1 302 -9 183 80 0 0 chr13 50350175 50350200 -51522969 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr13 50351272 50351293 -51521876 + AT_rich Low_complexity Low_complexity 1 21 0 1476 192 0 8 chr13 50351326 50351614 -51521555 + AluJb SINE Alu 25 310 0 264 167 0 0 chr13 50352780 50352828 -51520341 + (TA)n Simple_repeat Simple_repeat 2 49 0 525 213 0 4 chr13 50353558 50353786 -51519383 + L1MA5A LINE L1 6037 6294 -3 23 33 0 0 chr13 50354659 50354689 -51518480 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 50358547 50358578 -51514591 + AT_rich Low_complexity Low_complexity 1 31 0 486 0 0 0 chr13 50359099 50359153 -51514016 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 2537 84 41 0 chr13 50359153 50359498 -51513671 - L1PA10 LINE L1 -21 6147 5789 3138 184 25 44 chr13 50359530 50359682 -51513487 + MER67C LTR ERV1 3 156 -554 183 42 0 0 chr13 50359682 50359706 -51513463 + (CA)n Simple_repeat Simple_repeat 1 24 0 3138 184 25 44 chr13 50359706 50360275 -51512894 + MER67C LTR ERV1 156 710 0 202 343 0 0 chr13 50361049 50361122 -51512047 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 539 275 9 31 chr13 50361504 50361733 -51511436 - L1M4 LINE L1 -1085 5061 4838 3912 175 61 28 chr13 50361744 50362751 -51510418 + L1M3 LINE L1 4490 5529 -654 288 0 0 0 chr13 50364021 50364053 -51509116 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr13 50364167 50364209 -51508960 + AT_rich Low_complexity Low_complexity 1 42 0 6275 136 59 37 chr13 50364944 50365353 -51507816 + Tigger3b DNA MER2_type 2 401 -2627 1467 116 27 4 chr13 50365353 50365578 -51507591 + MER30 DNA MER1_type 1 230 0 6275 136 59 37 chr13 50365578 50366371 -51506798 + Tigger3b DNA MER2_type 401 1230 -1 23 54 0 0 chr13 50367222 50367259 -51505910 + AT_rich Low_complexity Low_complexity 1 37 0 257 281 169 11 chr13 50369203 50369292 -51503877 - L2 LINE L2 -28 3285 3183 386 186 290 0 chr13 50369488 50369633 -51503536 - MER53 DNA DNA -2 187 1 25 31 0 0 chr13 50369993 50370025 -51503144 + AT_rich Low_complexity Low_complexity 1 32 0 431 290 105 25 chr13 50370075 50370275 -51502894 + MIR SINE MIR 47 262 0 188 325 89 32 chr13 50420960 50421083 -51452086 + L2 LINE L2 3184 3313 0 1080 225 85 62 chr13 50421199 50421506 -51451663 + MLT1E LTR MaLR 1 314 -279 199 350 153 6 chr13 50421630 50421793 -51451376 + MIR3 SINE MIR 16 202 -6 6156 134 206 20 chr13 50421874 50423306 -51449863 + pTR5 LTR ERV1 741 2438 0 198 330 121 80 chr13 50423471 50423540 -51449629 + MIR SINE MIR 20 85 -177 1427 219 3 10 chr13 50423540 50423846 -51449323 - AluJo SINE Alu -5 307 4 198 330 121 80 chr13 50423846 50424000 -51449169 + MIR SINE MIR 85 252 -10 297 282 75 34 chr13 50425048 50425314 -51447855 - L1MC5 LINE L1 -48 7913 7637 264 291 113 7 chr13 50425397 50425538 -51447631 + L1MC5 LINE L1 6960 7115 -846 2018 136 0 10 chr13 50425772 50426074 -51447095 - AluSx SINE Alu -13 299 1 333 0 0 0 chr13 50427062 50427099 -51446070 + (TG)n Simple_repeat Simple_repeat 2 38 0 770 187 7 0 chr13 50428637 50428776 -51444393 - FRAM SINE Alu -37 139 1 731 165 0 0 chr13 50430320 50430441 -51442728 - L1MC1 LINE L1 -13 6320 6200 23 0 0 0 chr13 50430511 50430534 -51442635 + AT_rich Low_complexity Low_complexity 1 23 0 276 164 18 0 chr13 50430831 50430886 -51442283 - U7 snRNA snRNA -6 57 2 387 245 54 34 chr13 50430991 50431138 -51442031 + MER104 DNA Tc2 1 150 -30 2177 99 0 3 chr13 50431998 50432305 -51440864 - AluSq SINE Alu 0 306 1 25 0 0 0 chr13 50432965 50432990 -51440179 + AT_rich Low_complexity Low_complexity 1 25 0 200 211 0 0 chr13 50434029 50434067 -51439102 - L2 LINE L2 -12 3301 3264 207 152 0 0 chr13 50436820 50436866 -51436303 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 203 133 0 0 chr13 50436872 50436902 -51436267 + (CA)n Simple_repeat Simple_repeat 2 31 0 2225 97 0 3 chr13 50437742 50438042 -51435127 + AluY SINE Alu 1 299 -12 299 326 11 11 chr13 50438182 50438274 -51434895 - L2 LINE L2 0 3272 3181 279 0 0 0 chr13 50440641 50440672 -51432497 + (CA)n Simple_repeat Simple_repeat 2 32 0 1552 115 17 17 chr13 50440990 50441224 -51431945 - AluSg/x SINE Alu -13 299 66 234 197 49 0 chr13 50441821 50441882 -51431287 + (TAGA)n Simple_repeat Simple_repeat 3 66 0 204 227 0 0 chr13 50442177 50442221 -51430948 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 306 252 150 27 chr13 50442902 50443049 -51430120 - MARNA DNA Mariner -414 172 8 837 209 35 10 chr13 50444348 50444549 -51428620 + L1MC2 LINE L1 6114 6319 -25 21 36 0 0 chr13 50444924 50444952 -51428217 + AT_rich Low_complexity Low_complexity 1 28 0 292 397 30 8 chr13 50445801 50445932 -51427237 - L2 LINE L2 -2 3270 3137 275 290 112 9 chr13 50446503 50446610 -51426559 + L2 LINE L2 3191 3308 -5 22901 154 22 19 chr13 50446737 50453797 -51419372 + L1MA3 LINE L1 12 7102 -622 2354 77 0 10 chr13 50453797 50454108 -51419061 + AluY SINE Alu 2 309 -2 22901 154 22 19 chr13 50454108 50454734 -51418435 + L1MA3 LINE L1 7102 7724 0 203 30 0 61 chr13 50454801 50454834 -51418335 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1414 176 3 71 chr13 50454836 50455132 -51418037 - AluJb SINE Alu -32 280 5 26 0 0 0 chr13 50455138 50455164 -51418005 + AT_rich Low_complexity Low_complexity 1 26 0 38 0 0 0 chr13 50455474 50455512 -51417657 + AT_rich Low_complexity Low_complexity 1 38 0 952 186 30 13 chr13 50457978 50458266 -51414903 - MER2 DNA MER2_type 0 345 22 225 269 29 48 chr13 50458798 50458902 -51414267 + HsTC2 DNA Tc2 1793 1894 -4 192 337 104 31 chr13 50458936 50459129 -51414040 - MIR SINE MIR -6 256 50 272 220 22 88 chr13 50459304 50459395 -51413774 + L2 LINE L2 3183 3267 -46 309 89 0 0 chr13 50462144 50462189 -51410980 + (TG)n Simple_repeat Simple_repeat 2 46 0 2266 101 0 0 chr13 50462301 50462598 -51410571 + AluSp SINE Alu 1 297 -16 2072 116 30 0 chr13 50465206 50465508 -51407661 - AluSq SINE Alu -2 311 1 200 331 39 39 chr13 50465553 50465680 -51407489 + L2 LINE L2 2928 3054 -218 21 0 0 0 chr13 50465849 50465870 -51407299 + AT_rich Low_complexity Low_complexity 1 21 0 201 264 19 0 chr13 50467312 50467365 -51405804 + GA-rich Low_complexity Low_complexity 1 54 0 205 176 15 59 chr13 50468595 50468663 -51404506 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 21 71 0 0 chr13 50469979 50470021 -51403148 + AT_rich Low_complexity Low_complexity 1 42 0 369 277 106 53 chr13 50470090 50470372 -51402797 + L2 LINE L2 3008 3304 -9 631 171 130 14 chr13 50470875 50471021 -51402148 + MLT1C LTR MaLR 1 163 -227 207 0 0 0 chr13 50471023 50471046 -51402123 + (A)n Simple_repeat Simple_repeat 1 23 0 2227 128 37 3 chr13 50471056 50471408 -51401761 + THE1B LTR MaLR 1 364 0 9537 95 8 131 chr13 50471416 50473191 -51399978 + THE1B-int LTR MaLR 15 1570 -10 2334 126 5 32 chr13 50473200 50473574 -51399595 + THE1B LTR MaLR 1 364 0 843 222 62 45 chr13 50473574 50473852 -51399317 + MLT1C LTR MaLR 182 467 0 25 31 0 0 chr13 50474148 50474180 -51398989 + AT_rich Low_complexity Low_complexity 1 32 0 197 259 74 0 chr13 50475188 50475242 -51397927 + MIR SINE MIR 84 141 -121 25 0 0 0 chr13 50475447 50475472 -51397697 + AT_rich Low_complexity Low_complexity 1 25 0 189 338 183 7 chr13 50475711 50475853 -51397316 + MIR SINE MIR 93 259 -3 24 0 0 0 chr13 50477030 50477054 -51396115 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr13 50477414 50477445 -51395724 + AT_rich Low_complexity Low_complexity 1 31 0 2034 166 53 69 chr13 50477538 50477973 -51395196 + MSTA LTR MaLR 1 428 0 190 275 0 58 chr13 50478615 50478684 -51394485 - MIR SINE MIR -100 162 98 205 136 23 45 chr13 50478721 50478765 -51394404 - MIR SINE MIR -36 226 184 21 36 0 0 chr13 50479157 50479185 -51393984 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr13 50480548 50480597 -51392572 + AT_rich Low_complexity Low_complexity 1 49 0 206 325 75 58 chr13 50481530 50481770 -51391399 + L2 LINE L2 2719 2962 -352 224 300 29 0 chr13 50481929 50481999 -51391170 + L2 LINE L2 3234 3305 -8 186 103 0 0 chr13 50482050 50482079 -51391090 + (TA)n Simple_repeat Simple_repeat 2 30 0 641 202 55 22 chr13 50482238 50482421 -51390748 - MER106A DNA MER1_type -15 221 33 457 16 32 0 chr13 50482456 50482518 -51390651 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 381 300 83 39 chr13 50483647 50483877 -51389292 - MIR SINE MIR -21 241 2 2273 126 29 27 chr13 50484488 50484862 -51388307 + THE1C LTR MaLR 1 375 0 1162 153 42 0 chr13 50484862 50485077 -51388092 + THE1C-int LTR MaLR 1 224 -1356 * 7322 134 27 6 chr13 50485065 50486217 -51386952 + THE1C-int LTR MaLR 405 1580 0 2464 109 16 21 chr13 50486217 50486594 -51386575 + THE1C LTR MaLR 1 375 0 1781 156 3 3 chr13 50491137 50491448 -51381721 - AluSx SINE Alu 0 311 1 21 0 0 0 chr13 50493634 50493655 -51379514 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 50494751 50494799 -51378370 + AT_rich Low_complexity Low_complexity 1 48 0 252 182 30 15 chr13 50494813 50494879 -51378290 + (TA)n Simple_repeat Simple_repeat 1 67 0 183 250 0 21 chr13 50494929 50494977 -51378192 + L2 LINE L2 3267 3313 0 2437 54 0 0 chr13 50495016 50495311 -51377858 - AluY SINE Alu -14 297 3 251 242 30 0 chr13 50495719 50495785 -51377384 + LTR50 LTR ERVL 720 787 -8 198 0 0 0 chr13 50496894 50496916 -51376253 + (T)n Simple_repeat Simple_repeat 1 22 0 1622 185 18 4 chr13 50496932 50497213 -51375956 + AluJo SINE Alu 3 287 -25 23 68 0 0 chr13 50497213 50497257 -51375912 + AT_rich Low_complexity Low_complexity 1 44 0 871 203 8 100 chr13 50497649 50497817 -51375352 - MER20 DNA MER1_type 0 219 78 3169 178 12 0 chr13 50497817 50498418 -51374751 + L1MB3 LINE L1 5575 6182 -1 871 203 8 100 chr13 50498418 50498490 -51374679 - MER20 DNA MER1_type -141 78 1 195 42 0 0 chr13 50498678 50498702 -51374467 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 1452 184 3 31 chr13 50498704 50498997 -51374172 - AluJo SINE Alu -27 285 1 2084 129 3 22 chr13 50499006 50499324 -51373845 - AluSx SINE Alu 0 312 1 1241 245 41 58 chr13 50499447 50499909 -51373260 + MLT1C LTR MaLR 13 466 -1 23 33 0 0 chr13 50499957 50499987 -51373182 + AT_rich Low_complexity Low_complexity 1 30 0 534 98 0 0 chr13 50500999 50501081 -51372088 + (TA)n Simple_repeat Simple_repeat 1 82 0 241 277 0 43 chr13 50501453 50501547 -51371622 + L1MC4 LINE L1 6614 6703 -1339 217 319 113 25 chr13 50501921 50502081 -51371088 - MIR SINE MIR -12 250 77 21 0 0 0 chr13 50502300 50502321 -51370848 + AT_rich Low_complexity Low_complexity 1 21 0 1888 165 22 53 chr13 50502448 50502861 -51370308 + L1MA9 LINE L1 5913 6312 0 265 308 0 0 chr13 50503074 50503152 -51370017 + (TATATG)n Simple_repeat Simple_repeat 4 81 0 1597 155 13 36 chr13 50503727 50504031 -51369138 + AluJb SINE Alu 2 298 -14 465 330 24 15 chr13 50506427 50506633 -51366536 + MIR SINE MIR 37 244 -18 2587 3 0 0 chr13 50508141 50508459 -51364710 - AluYa5 SINE Alu 0 318 1 1510 255 24 26 chr13 50510694 50511192 -51361977 - MLT1D LTR MaLR -7 498 2 243 219 31 0 chr13 50511238 50511302 -51361867 + L1ME LINE L1 5743 5808 -362 29 0 0 0 chr13 50513426 50513455 -51359714 + AT_rich Low_complexity Low_complexity 1 29 0 337 167 12 12 chr13 50513680 50513764 -51359405 + (TA)n Simple_repeat Simple_repeat 1 84 0 693 192 19 64 chr13 50513779 50513935 -51359234 + Tigger2a DNA MER2_type 1 149 -285 2348 86 3 0 chr13 50514294 50514595 -51358574 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 50514658 50514686 -51358483 + AT_rich Low_complexity Low_complexity 1 28 0 617 171 50 166 chr13 50516889 50517088 -51356081 + MER69 DNA AcHobo 1 2525 -1 26 50 0 0 chr13 50517173 50517213 -51355956 + AT_rich Low_complexity Low_complexity 1 40 0 2275 98 13 0 chr13 50517284 50517591 -51355578 + AluSx SINE Alu 1 311 -1 327 49 0 0 chr13 50517591 50517632 -51355537 + (TA)n Simple_repeat Simple_repeat 1 41 0 229 366 20 10 chr13 50519262 50519363 -51353806 + MIR SINE MIR 33 134 -128 1516 230 22 11 chr13 50519395 50519751 -51353418 + MLT1A1 LTR MaLR 1 360 -5 1971 116 22 53 chr13 50520255 50520573 -51352596 - AluSx SINE Alu -4 308 1 416 254 8 8 chr13 50521415 50521541 -51351628 - MER103 DNA DNA -10 156 31 383 261 64 57 chr13 50522458 50522615 -51350554 - MIR SINE MIR -95 167 10 2313 90 0 0 chr13 50522797 50523097 -51350072 + AluSx SINE Alu 2 301 -11 272 219 0 0 chr13 50524605 50524669 -51348500 + MER89 LTR ERV1 3 66 -493 1381 208 55 55 chr13 50524674 50525053 -51348116 + MER89 LTR ERV1 180 558 -1 1224 298 147 12 chr13 50525065 50525635 -51347534 + L2 LINE L2 2205 2851 -463 743 266 68 25 chr13 50525714 50526037 -51347132 - LTR37A LTR ERV1 0 426 90 318 98 20 0 chr13 50526076 50526127 -51347042 - MADE1 DNA Mariner -27 53 2 1268 208 29 39 chr13 50527088 50527400 -51345769 + AluJo SINE Alu 1 309 -3 25 0 0 0 chr13 50527656 50527681 -51345488 + AT_rich Low_complexity Low_complexity 1 25 0 371 373 103 35 chr13 50528034 50528345 -51344824 - L3 LINE CR1 -130 1447 1116 369 290 48 102 chr13 50529094 50529428 -51343741 + L2 LINE L2 2207 2522 -792 217 358 60 45 chr13 50529545 50529746 -51343423 + L2 LINE L2 2686 2889 -425 285 351 41 77 chr13 50529785 50530124 -51343045 + L2 LINE L2 2943 3269 -3 249 405 63 42 chr13 50530492 50530776 -51342393 + L2 LINE L2 2958 3247 -25 953 210 6 0 chr13 50530787 50530968 -51342201 - AluJ SINE Alu -10 302 121 646 194 16 8 chr13 50531002 50531131 -51342038 - AluJ SINE Alu -170 132 3 181 346 146 27 chr13 50531199 50531384 -51341785 + L3b LINE CR1 1236 1442 -141 29 0 0 0 chr13 50532215 50532244 -51340925 + AT_rich Low_complexity Low_complexity 1 29 0 980 175 60 5 chr13 50532250 50532467 -51340702 - L1MA4 LINE L1 -12 6288 6060 1101 285 150 23 chr13 50534211 50534682 -51338487 + MER77 LTR ERV1 177 767 -8 2250 112 0 0 chr13 50535792 50536086 -51337083 + AluSx SINE Alu 1 294 -18 1532 169 26 98 chr13 50536285 50536704 -51336465 + MLT1B LTR MaLR 2 390 0 42527 32 22 1 chr13 50537593 50543618 -51329551 + L1PA2 LINE L1 1 6155 0 1583 141 32 0 chr13 50543618 50543894 -51329275 + L1MA8 LINE L1 6001 6286 -5 37 23 0 0 chr13 50543902 50543946 -51329223 + AT_rich Low_complexity Low_complexity 1 44 0 213 369 0 15 chr13 50544003 50544068 -51329101 - L2 LINE L2 -86 3186 3123 25 0 0 0 chr13 50544521 50544546 -51328623 + AT_rich Low_complexity Low_complexity 1 25 0 589 346 43 0 chr13 50545087 50545318 -51327851 + MIR SINE MIR 22 262 0 21 0 0 0 chr13 50545785 50545806 -51327363 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr13 50546608 50546634 -51326535 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 2057 115 0 7 chr13 50547180 50547513 -51325656 + AluSg SINE Alu 1 310 0 221 281 0 0 chr13 50547723 50547780 -51325389 + (TA)n Simple_repeat Simple_repeat 1 57 0 2019 144 38 19 chr13 50548930 50549298 -51323871 + THE1C LTR MaLR 1 375 0 277 286 281 20 chr13 50549500 50549699 -51323470 - MIR SINE MIR -1 261 11 352 204 0 23 chr13 50549989 50550077 -51323092 + L1MA8 LINE L1 6202 6287 -4 200 206 0 0 chr13 50550186 50550220 -51322949 + (CA)n Simple_repeat Simple_repeat 1 34 0 488 270 70 25 chr13 50551734 50551934 -51321235 + MER3 DNA MER1_type 1 209 0 313 341 172 16 chr13 50551954 50552391 -51320778 - L2 LINE L2 -43 3270 2771 24 32 0 0 chr13 50552417 50552448 -51320721 + AT_rich Low_complexity Low_complexity 1 31 0 1509 181 0 0 chr13 50552459 50552707 -51320462 - AluJb SINE Alu -64 248 1 197 410 8 8 chr13 50552711 50552845 -51320324 - L2 LINE L2 -567 2747 2614 345 322 117 0 chr13 50552984 50553164 -51320005 - L2 LINE L2 -906 2408 2208 1101 177 84 0 chr13 50553363 50553600 -51319569 + L1MA5A LINE L1 6035 6291 -6 23 54 0 0 chr13 50554154 50554191 -51318978 + AT_rich Low_complexity Low_complexity 1 37 0 1950 73 0 22 chr13 50554228 50554500 -51318669 + L1PA7 LINE L1 5887 6152 -2 311 224 163 0 chr13 50555320 50555418 -51317751 - MIR SINE MIR -73 189 76 192 361 56 37 chr13 50555417 50555525 -51317644 + L2 LINE L2 3151 3260 -12 * 275 301 88 7 chr13 50556805 50556941 -51316228 + MLT1J LTR MaLR 8 154 -357 2079 103 0 7 chr13 50556956 50557237 -51315932 - AluSx SINE Alu -23 289 11 234 319 56 0 chr13 50557312 50557384 -51315785 + MLT1J1 LTR MaLR 238 313 -133 1372 187 64 26 chr13 50558188 50558531 -51314638 - L1MA8 LINE L1 -3 6288 5933 505 86 49 0 chr13 50558538 50558619 -51314550 - L1MA6 LINE L1 0 7719 7635 2273 225 26 8 chr13 50558630 50559244 -51313925 - L1MA6 LINE L1 -215 7504 4548 1413 227 24 34 chr13 50559245 50560469 -51312700 - L1MA6 LINE L1 -3646 3919 2643 4384 155 22 33 chr13 50560476 50561468 -51311701 + MER11C LTR ERVK 1 1071 0 1576 272 49 44 chr13 50561476 50562828 -51310341 - L1M3c LINE L1 -4521 2516 11 21 0 0 0 chr13 50562975 50562996 -51310173 + AT_rich Low_complexity Low_complexity 1 21 0 709 224 35 0 chr13 50563077 50563220 -51309949 - FAM SINE Alu -17 168 21 26 64 0 0 chr13 50563274 50563321 -51309848 + AT_rich Low_complexity Low_complexity 1 47 0 1973 150 0 10 chr13 50563902 50564209 -51308960 - AluSx SINE Alu -8 304 1 257 176 57 45 chr13 50565108 50565284 -51307885 - HERV17 LTR ERV1 -7774 852 675 269 306 0 12 chr13 50566690 50566775 -51306394 + GA-rich Low_complexity Low_complexity 2 85 0 26 50 0 0 chr13 50567119 50567159 -51306010 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr13 50568419 50568447 -51304722 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr13 50568950 50568984 -51304185 + AT_rich Low_complexity Low_complexity 1 34 0 252 276 0 46 chr13 50569855 50569942 -51303227 - MIR3 SINE MIR -5 203 121 1005 107 7 0 chr13 50570329 50570479 -51302690 + L1PB2 LINE L1 6000 6150 -1 430 373 37 13 chr13 50570600 50570900 -51302269 + LTR33 LTR ERVL 44 350 -171 192 264 11 46 chr13 50570906 50570993 -51302176 + L2 LINE L2 2646 2729 -585 248 275 0 43 chr13 50571033 50571102 -51302067 + L2 LINE L2 2965 3030 -242 899 223 0 0 chr13 50571191 50571357 -51301812 - FAM SINE Alu -9 166 1 194 173 0 19 chr13 50571430 50571482 -51301687 + CT-rich Low_complexity Low_complexity 2 52 0 242 241 56 83 chr13 50571552 50571660 -51301509 - L2 LINE L2 -93 3220 3116 384 319 44 40 chr13 50571752 50571978 -51301191 + MIR SINE MIR 2 228 -34 24 0 0 0 chr13 50572792 50572816 -51300353 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr13 50572873 50572898 -51300271 + AT_rich Low_complexity Low_complexity 1 25 0 761 152 4 161 chr13 50573290 50573457 -51299712 + MER3 DNA MER1_type 1 120 -89 2314 77 3 10 chr13 50573457 50573770 -51299399 + AluY SINE Alu 1 311 0 761 152 4 161 chr13 50573770 50573845 -51299324 + MER3 DNA MER1_type 120 205 -4 2318 86 3 0 chr13 50573887 50574188 -51298981 - AluSq SINE Alu -11 302 1 185 250 0 0 chr13 50574501 50574545 -51298624 - L2 LINE L2 -1684 1630 1587 478 259 23 8 chr13 50575390 50575521 -51297648 + MER94 DNA DNA 1 133 -1 2162 171 40 28 chr13 50575547 50575973 -51297196 + Tigger2a DNA MER2_type 4 434 0 11951 27 0 1 chr13 50576223 50578412 -51294757 + L1PA3 LINE L1 3974 6161 0 279 329 162 6 chr13 50578747 50578914 -51294255 - MIR SINE MIR -24 238 46 2195 245 21 33 chr13 50579323 50579651 -51293518 + L1MA9 LINE L1 5625 5955 -357 2194 84 0 0 chr13 50579651 50579925 -51293244 + AluSc SINE Alu 1 274 -35 315 0 0 0 chr13 50579926 50579961 -51293208 + (TC)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr13 50579960 50579985 -51293184 + (TA)n Simple_repeat Simple_repeat 1 25 0 2195 245 21 33 chr13 50579961 50579984 -51293185 + L1MA9 LINE L1 5955 5977 -335 261 0 0 0 chr13 50579984 50580013 -51293156 + (TG)n Simple_repeat Simple_repeat 2 30 0 2195 245 21 33 chr13 50580013 50580340 -51292829 + L1MA9 LINE L1 5977 6274 -38 25 0 0 0 chr13 50580398 50580423 -51292746 + AT_rich Low_complexity Low_complexity 1 25 0 693 297 68 73 chr13 50580558 50580982 -51292187 + L2 LINE L2 2892 3313 0 30 0 0 0 chr13 50581281 50581311 -51291858 + AT_rich Low_complexity Low_complexity 1 30 0 809 220 75 51 chr13 50582532 50582827 -51290342 + MER33 DNA MER1_type 1 302 -22 685 324 50 40 chr13 50584214 50584711 -51288458 + MLT1J LTR MaLR 8 509 -2 21 0 0 0 chr13 50584892 50584913 -51288256 + AT_rich Low_complexity Low_complexity 1 21 0 2115 134 0 0 chr13 50587444 50587749 -51285420 + AluSx SINE Alu 1 305 -7 834 214 159 43 chr13 50588166 50588493 -51284676 - MLT1A1 LTR MaLR 0 365 1 203 347 66 8 chr13 50588494 50588615 -51284554 + MIR SINE MIR 86 213 -49 225 0 0 0 chr13 50588759 50588784 -51284385 + (T)n Simple_repeat Simple_repeat 1 25 0 189 132 0 0 chr13 50588822 50588860 -51284309 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 201 339 54 0 chr13 50589340 50589396 -51283773 - MIR SINE MIR -189 73 15 22 0 0 0 chr13 50589609 50589631 -51283538 + AT_rich Low_complexity Low_complexity 1 22 0 467 344 39 22 chr13 50589752 50589982 -51283187 + L2 LINE L2 3062 3295 -18 403 288 104 45 chr13 50590139 50590804 -51282365 - L1MC/D LINE L1 -748 5585 4875 379 113 28 42 chr13 50591589 50591660 -51281509 + MADE1 DNA Mariner 1 70 -10 256 79 0 0 chr13 50591639 50591677 -51281492 - MADE1 DNA Mariner -12 68 31 * 349 154 0 15 chr13 50591807 50591872 -51281297 + MADE1 DNA Mariner 17 80 0 1879 156 3 0 chr13 50592498 50592799 -51280370 + AluSq SINE Alu 1 302 -11 210 156 0 0 chr13 50593213 50593258 -51279911 + (TA)n Simple_repeat Simple_repeat 1 45 0 292 149 15 15 chr13 50594341 50594408 -51278761 + GA-rich Low_complexity Low_complexity 4 70 0 279 54 0 0 chr13 50595077 50595114 -51278055 + (CA)n Simple_repeat Simple_repeat 2 38 0 1133 184 21 13 chr13 50595237 50595470 -51277699 - MER46A DNA MER2_type 0 236 2 289 320 248 0 chr13 50596766 50596891 -51276278 - L2 LINE L2 0 3272 3117 216 0 0 0 chr13 50598071 50598095 -51275074 + (TG)n Simple_repeat Simple_repeat 2 25 0 303 290 0 28 chr13 50598095 50598202 -51274967 + GA-rich Low_complexity Low_complexity 2 105 0 1832 149 7 17 chr13 50598928 50599229 -51273940 - AluSx SINE Alu -14 298 1 506 337 60 51 chr13 50599846 50600693 -51272476 + L2 LINE L2 2399 3289 -24 613 241 19 19 chr13 50600901 50601063 -51272106 + MIR SINE MIR 101 262 0 231 303 98 61 chr13 50601153 50601285 -51271884 + L2 LINE L2 3177 3313 0 315 49 0 0 chr13 50602099 50602140 -51271029 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 26 64 0 0 chr13 50602788 50602835 -51270334 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr13 50604541 50604563 -51268606 + AT_rich Low_complexity Low_complexity 1 22 0 318 292 100 8 chr13 50604937 50605057 -51268112 + MER94 DNA DNA 2 132 -2 221 367 20 0 chr13 50605597 50605744 -51267425 - MIR3 SINE MIR -6 202 53 273 305 144 17 chr13 50606735 50606909 -51266260 + MIR SINE MIR 48 243 -19 443 236 163 5 chr13 50607576 50607766 -51265403 + MIR SINE MIR 33 258 -4 23 68 0 0 chr13 50607767 50607811 -51265358 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr13 50608527 50608571 -51264598 + AT_rich Low_complexity Low_complexity 1 44 0 339 317 150 24 chr13 50608859 50609026 -51264143 + MER5A DNA MER1_type 1 188 -1 2353 61 0 3 chr13 50609062 50609358 -51263811 - AluY SINE Alu -16 295 1 310 281 72 50 chr13 50609798 50609937 -51263232 + L2 LINE L2 3171 3312 -1 258 155 69 0 chr13 50610283 50610341 -51262828 - L1ME LINE L1 -5471 599 538 732 282 52 74 chr13 50610521 50611063 -51262106 - L1ME LINE L1 -5539 531 2 1521 209 38 20 chr13 50612029 50612422 -51260747 - Charlie4a DNA MER1_type -17 491 92 1359 134 0 0 chr13 50613828 50614029 -51259140 + AluSg/x SINE Alu 100 300 -12 609 251 31 25 chr13 50614153 50614316 -51258853 - L2 LINE L2 0 3313 3150 273 362 26 26 chr13 50615382 50615498 -51257671 + MIR3 SINE MIR 13 128 -80 385 289 0 0 chr13 50615594 50615670 -51257499 + MIR3 SINE MIR 114 189 -19 261 283 29 87 chr13 50615883 50616021 -51257148 - MLT1H LTR MaLR -198 351 222 733 155 14 7 chr13 50616044 50616192 -51256977 + CT-rich Low_complexity Low_complexity 3 151 0 1022 221 0 9 chr13 50616549 50616766 -51256403 + AluJb SINE Alu 98 312 0 381 324 77 12 chr13 50616827 50616997 -51256172 + L3 LINE CR1 1051 1231 -346 26 19 6 0 chr13 50617369 50617434 -51255735 + AT_rich Low_complexity Low_complexity 1 33 0 396 305 90 18 chr13 50617909 50618076 -51255093 + MIR SINE MIR 41 219 -43 207 0 0 0 chr13 50619109 50619132 -51254037 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 441 106 0 32 chr13 50619137 50619231 -51253938 + (CCTG)n Simple_repeat Simple_repeat 2 92 0 529 183 8 8 chr13 50619257 50619377 -51253792 + CT-rich Low_complexity Low_complexity 2 121 0 24 0 0 0 chr13 50619441 50619465 -51253704 + AT_rich Low_complexity Low_complexity 1 24 0 993 194 0 10 chr13 50619465 50619666 -51253503 - L1PB1 LINE L1 0 6151 5953 182 308 58 0 chr13 50620912 50620964 -51252205 + L2 LINE L2 3259 3313 0 602 161 0 8 chr13 50620976 50621094 -51252075 + GA-rich Low_complexity Low_complexity 4 120 0 5422 123 18 19 chr13 50622062 50623170 -51249999 + L1PA15 LINE L1 5053 6159 -6 225 342 165 6 chr13 50623327 50623485 -51249684 - MIR SINE MIR -14 248 66 1016 149 7 0 chr13 50623882 50624036 -51249133 + AluSg SINE Alu 1 155 -155 620 203 116 43 chr13 50624167 50624374 -51248795 - MER2 DNA MER2_type -1 344 123 2470 48 0 10 chr13 50624909 50625223 -51247946 + AluY SINE Alu 1 311 0 1512 187 0 26 chr13 50625868 50626178 -51246991 + AluJo SINE Alu 3 304 -8 4402 98 24 2 chr13 50626628 50627261 -51245908 + L1PA13 LINE L1 5514 6160 -3 2097 118 27 0 chr13 50627573 50627870 -51245299 + AluSq SINE Alu 1 305 -8 248 245 0 143 chr13 50628849 50628912 -51244257 + MIR SINE MIR 19 65 -197 297 0 0 0 chr13 50628912 50628945 -51244224 + (CA)n Simple_repeat Simple_repeat 1 33 0 248 245 0 143 chr13 50628945 50628979 -51244190 + MIR SINE MIR 65 102 -160 349 82 0 0 chr13 50628979 50629028 -51244141 + MADE1 DNA Mariner 1 49 -31 1317 216 42 51 chr13 50629125 50629481 -51243688 - MLT1B LTR MaLR -4 386 34 237 132 0 0 chr13 50629557 50629595 -51243574 + (ATG)n Simple_repeat Simple_repeat 1 38 0 197 169 99 42 chr13 50629829 50629900 -51243269 - MIR SINE MIR -102 160 86 426 250 14 88 chr13 50630140 50630288 -51242881 + MER5A DNA MER1_type 46 182 -7 23 0 0 0 chr13 50630415 50630438 -51242731 + AT_rich Low_complexity Low_complexity 1 23 0 312 91 0 0 chr13 50630529 50630573 -51242596 + (TAA)n Simple_repeat Simple_repeat 2 45 0 703 209 0 8 chr13 50631076 50631210 -51241959 - FLAM_A SINE Alu 0 133 1 298 301 111 28 chr13 50631474 50631651 -51241518 + MIR SINE MIR 3 191 -17 22 0 0 0 chr13 50631670 50631692 -51241477 + AT_rich Low_complexity Low_complexity 1 22 0 3000 215 40 7 chr13 50631733 50632351 -51240818 - MER82 DNA MER2_type -5 648 10 278 289 202 35 chr13 50632909 50633082 -51240087 - MIR SINE MIR -11 251 50 22 35 0 0 chr13 50636167 50636196 -51236973 + AT_rich Low_complexity Low_complexity 1 29 0 257 283 40 62 chr13 50636982 50637159 -51236010 - MARNA DNA Mariner -269 317 145 25 83 0 0 chr13 50640290 50640350 -51232819 + AT_rich Low_complexity Low_complexity 1 60 0 769 297 5 10 chr13 50640605 50640814 -51232355 + MIR SINE MIR 41 248 -14 1824 100 7 18 chr13 50640905 50641185 -51231984 - AluY SINE Alu 0 311 35 2274 97 77 14 chr13 50641263 50641615 -51231554 - THE1C LTR MaLR -1 374 1 2344 69 20 0 chr13 50643631 50643936 -51229233 + AluY SINE Alu 1 311 0 2029 125 4 0 chr13 50643946 50644257 -51228912 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 50645440 50645463 -51227706 + AT_rich Low_complexity Low_complexity 1 23 0 190 323 31 0 chr13 50646859 50646924 -51226245 - MIR SINE MIR -148 114 48 3628 34 0 0 chr13 50647368 50647808 -51225361 - L1PA3 LINE L1 -1008 5138 4699 7653 27 0 0 chr13 50647808 50648866 -51224303 + L1PA3 LINE L1 5132 6189 0 261 0 0 0 chr13 50649232 50649261 -51223908 + (TG)n Simple_repeat Simple_repeat 1 29 0 237 33 0 0 chr13 50649260 50649290 -51223879 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 212 300 25 25 chr13 50651259 50651339 -51221830 + MIR SINE MIR 146 225 -37 31 0 0 0 chr13 50651415 50651446 -51221723 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr13 50651636 50651659 -51221510 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 50651702 50651731 -51221438 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 50652510 50652534 -51220635 + AT_rich Low_complexity Low_complexity 1 24 0 2139 113 0 0 chr13 50652534 50652844 -51220325 - AluSx SINE Alu -2 310 1 342 379 103 4 chr13 50655191 50655423 -51217746 + MIR SINE MIR 3 257 -5 2272 114 19 30 chr13 50655531 50655898 -51217271 - THE1B LTR MaLR -1 363 1 2164 104 17 0 chr13 50658216 50658515 -51214654 - AluSx SINE Alu -8 304 1 23 54 0 0 chr13 50659825 50659862 -51213307 + AT_rich Low_complexity Low_complexity 1 37 0 255 61 0 0 chr13 50660652 50660685 -51212484 + (CA)n Simple_repeat Simple_repeat 1 33 0 1672 106 61 93 chr13 50661020 50661331 -51211838 - AluSx SINE Alu -9 303 3 29 60 0 0 chr13 50661932 50661982 -51211187 + AT_rich Low_complexity Low_complexity 1 50 0 414 0 0 0 chr13 50662829 50662875 -51210294 + (TA)n Simple_repeat Simple_repeat 1 46 0 2028 112 4 0 chr13 50662899 50663177 -51209992 + AluSq SINE Alu 1 279 -34 246 87 0 0 chr13 50663187 50663233 -51209936 - LTR66 LTR ERVL -171 439 394 236 157 39 0 chr13 50663233 50663284 -51209885 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 27 0 0 0 chr13 50663589 50663616 -51209553 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 50663709 50663740 -51209429 + AT_rich Low_complexity Low_complexity 1 31 0 2620 20 3 0 chr13 50663861 50664161 -51209008 - AluY SINE Alu -10 301 1 25 65 0 0 chr13 50664498 50664544 -51208625 + AT_rich Low_complexity Low_complexity 1 46 0 184 250 125 28 chr13 50664974 50665046 -51208123 + MIR SINE MIR 64 142 -66 295 290 199 19 chr13 50665062 50665324 -51207845 - L2 LINE L2 -5 3308 3000 1627 197 110 16 chr13 50665449 50665875 -51207294 + MLT1D LTR MaLR 40 505 0 198 103 0 0 chr13 50665887 50665916 -51207253 + (A)n Simple_repeat Simple_repeat 1 29 0 360 327 10 68 chr13 50665952 50666157 -51207012 - L2 LINE L2 -647 2667 2475 255 61 0 0 chr13 50667337 50667370 -51205799 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2215 97 13 0 chr13 50667535 50667843 -51205326 - AluSp SINE Alu -1 312 1 654 199 141 50 chr13 50667855 50668117 -51205052 + L1ME1 LINE L1 5877 6162 -4 1052 0 0 0 chr13 50668154 50668272 -51204897 + AluY SINE Alu 192 309 -2 22 35 0 0 chr13 50668964 50668993 -51204176 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr13 50670697 50670728 -51202441 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 50670944 50670965 -51202204 + AT_rich Low_complexity Low_complexity 1 21 0 1886 130 56 0 chr13 50672684 50672968 -51200201 - AluSx SINE Alu -12 300 1 23 54 0 0 chr13 50674892 50674929 -51198240 + AT_rich Low_complexity Low_complexity 1 37 0 423 344 113 5 chr13 50675796 50676008 -51197161 - MIR SINE MIR -20 242 8 27 87 0 0 chr13 50676510 50676579 -51196590 + AT_rich Low_complexity Low_complexity 1 69 0 23 54 0 0 chr13 50676875 50676912 -51196257 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr13 50677603 50677640 -51195529 + AT_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chr13 50678954 50678988 -51194181 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr13 50680217 50680241 -51192928 + AT_rich Low_complexity Low_complexity 1 24 0 267 190 0 0 chr13 50681865 50681923 -51191246 + (CA)n Simple_repeat Simple_repeat 2 59 0 2107 122 0 0 chr13 50682832 50683127 -51190042 + AluSg SINE Alu 1 295 -15 438 151 0 0 chr13 50683432 50683505 -51189664 - MER52A LTR ERV1 -6 1749 1677 * 3427 186 163 1 chr13 50683504 50684277 -51188892 - MER52A LTR ERV1 -857 898 1 282 29 0 0 chr13 50685412 50685447 -51187722 + (CA)n Simple_repeat Simple_repeat 2 36 0 2208 205 105 12 chr13 50685882 50686503 -51186666 - Tigger7 DNA MER2_type -6 2581 8 2437 59 0 0 chr13 50687174 50687480 -51185689 + AluY SINE Alu 1 306 -5 2184 118 7 0 chr13 50738376 50738681 -51134488 + AluSx SINE Alu 1 307 -5 565 322 98 11 chr13 50739506 50739792 -51133377 + L2 LINE L2 1764 2074 -1240 1347 198 43 12 chr13 50740565 50740894 -51132275 + L1 LINE L1 4298 4636 -1510 1902 56 0 0 chr13 50740940 50741173 -51131996 + AluY SINE Alu 1 233 -78 231 36 0 0 chr13 50743967 50743995 -51129174 + (CA)n Simple_repeat Simple_repeat 2 29 0 49 52 0 0 chr13 50744105 50744182 -51128987 + AT_rich Low_complexity Low_complexity 1 77 0 23 33 0 0 chr13 50746574 50746604 -51126565 + AT_rich Low_complexity Low_complexity 1 30 0 314 264 58 0 chr13 50747434 50747521 -51125648 - MIR3 SINE MIR -6 202 111 203 146 24 0 chr13 50749660 50749701 -51123468 + GA-rich Low_complexity Low_complexity 3 44 0 275 355 51 46 chr13 50750423 50750817 -51122352 + L2 LINE L2 1994 2389 -925 33 0 0 0 chr13 50751309 50751342 -51121827 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 50752686 50752709 -51120460 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr13 50753679 50753725 -51119444 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr13 50754626 50754649 -51118520 + AT_rich Low_complexity Low_complexity 1 23 0 546 313 23 46 chr13 50754994 50755211 -51117958 - MIR SINE MIR -28 234 23 194 290 14 29 chr13 50758250 50758319 -51114850 - L2 LINE L2 -87 3226 3159 2073 168 10 30 chr13 50758608 50758668 -51114501 - MLT1B LTR MaLR 0 390 330 2279 84 35 20 chr13 50758668 50759015 -51114154 + L1PA13 LINE L1 5812 6163 0 2073 168 10 30 chr13 50759015 50759352 -51113817 - MLT1B LTR MaLR -60 330 1 275 304 78 9 chr13 50759545 50759660 -51113509 + MIR SINE MIR 17 139 -69 256 300 106 38 chr13 50759770 50759930 -51113239 - MIR SINE MIR -8 254 84 1884 189 19 6 chr13 50759938 50760298 -51112871 + MLT1A1 LTR MaLR 1 365 0 36 17 0 35 chr13 50760744 50760777 -51112392 + AT_rich Low_complexity Low_complexity 1 33 -23 2046 137 0 0 chr13 50760777 50761076 -51112093 - AluSp SINE Alu -14 299 1 36 17 0 35 chr13 50761076 50761100 -51112069 + AT_rich Low_complexity Low_complexity 33 56 0 375 333 0 18 chr13 50763635 50763787 -51109382 + MIR SINE MIR 34 182 -26 225 276 11 11 chr13 50764114 50764201 -51108968 - L1MC4 LINE L1 -1339 6703 6617 24 91 0 0 chr13 50764367 50764433 -51108736 + AT_rich Low_complexity Low_complexity 1 66 0 2057 123 0 28 chr13 50765704 50766022 -51107147 + AluSq SINE Alu 3 311 -2 2851 3 0 0 chr13 50766161 50766472 -51106697 - AluY SINE Alu 0 311 1 22 0 0 0 chr13 50766505 50766527 -51106642 + AT_rich Low_complexity Low_complexity 1 22 0 1453 192 29 0 chr13 50766527 50766808 -51106361 - AluJb SINE Alu -23 289 1 24 0 0 0 chr13 50767225 50767249 -51105920 + AT_rich Low_complexity Low_complexity 1 24 0 2138 112 0 20 chr13 50767251 50767556 -51105613 + AluSc SINE Alu 1 299 -10 315 272 61 68 chr13 50768142 50768289 -51104880 + MIR SINE MIR 6 151 -111 270 413 64 0 chr13 50768590 50768808 -51104361 - MIR SINE MIR -12 250 19 226 296 86 33 chr13 50768852 50768988 -51104181 + L2 LINE L2 3113 3259 -54 2831 127 0 14 chr13 50768988 50769428 -51103741 + MER57B LTR ERV1 1 434 0 226 296 86 33 chr13 50769428 50769443 -51103726 + L2 LINE L2 3259 3272 -41 306 0 0 0 chr13 50770877 50770911 -51102258 + (TG)n Simple_repeat Simple_repeat 1 34 0 1587 124 93 15 chr13 50770911 50771170 -51101999 - AluSx SINE Alu -33 279 1 1644 248 55 45 chr13 50772584 50774017 -51099152 + L1MEc LINE L1 1957 3455 -2760 470 188 42 0 chr13 50774036 50774132 -51099037 - MER4E LTR ERV1 0 779 680 207 308 62 89 chr13 50775358 50775504 -51097665 + MIR SINE MIR 56 197 -65 360 0 0 0 chr13 50776270 50776310 -51096859 + (TG)n Simple_repeat Simple_repeat 1 40 0 1013 193 92 0 chr13 50776404 50776611 -51096558 + MER34C LTR ERV1 8 233 -352 353 191 38 19 chr13 50776639 50776744 -51096425 + LTR48 LTR ERV1 388 494 -293 376 216 85 80 chr13 50776768 50776944 -51096225 + LTR48 LTR ERV1 609 785 -2 900 311 70 33 chr13 50777017 50777629 -51095540 - L1ME3A LINE L1 -232 5938 5304 698 185 0 0 chr13 50777840 50777959 -51095210 + FLAM_C SINE Alu 1 119 -24 186 244 78 70 chr13 50778692 50778807 -51094362 - MIR SINE MIR -41 221 106 22 0 0 0 chr13 50781543 50781565 -51091604 + AT_rich Low_complexity Low_complexity 1 22 0 295 292 52 52 chr13 50781740 50781894 -51091275 + MIR SINE MIR 53 206 -56 23 54 0 0 chr13 50782417 50782454 -51090715 + AT_rich Low_complexity Low_complexity 1 37 0 275 71 24 0 chr13 50782841 50782883 -51090286 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 301 291 38 0 chr13 50784789 50784868 -51088301 + L2 LINE L2 3230 3311 -2 270 309 65 0 chr13 50785729 50785852 -51087317 - MIR SINE MIR -58 204 74 2417 64 0 0 chr13 50786210 50786506 -51086663 - AluY SINE Alu -6 305 10 205 250 78 16 chr13 50786692 50786756 -51086413 - L3 LINE CR1 -100 1477 1410 1398 128 68 44 chr13 50787310 50787561 -51085608 + AluSq SINE Alu 50 306 -7 242 271 28 56 chr13 50787563 50787670 -51085499 + L2 LINE L2 3209 3312 -1 1943 123 7 10 chr13 50787919 50788219 -51084950 + AluSx SINE Alu 1 299 -13 720 270 62 25 chr13 50788486 50788727 -51084442 - L3 LINE CR1 -476 1101 852 1053 218 37 104 chr13 50788992 50789346 -51083823 + MLT1A2 LTR MaLR 45 374 0 1903 174 7 0 chr13 50790923 50791233 -51081936 + AluJo SINE Alu 1 312 0 196 387 104 9 chr13 50792749 50792855 -51080314 + L2 LINE L2 3147 3262 -10 738 195 0 0 chr13 50792969 50793092 -51080077 + FLAM_C SINE Alu 1 123 -20 2261 101 3 0 chr13 50793230 50793537 -51079632 + AluSg SINE Alu 3 310 0 1649 179 61 3 chr13 50793856 50794185 -51078984 - MER7A DNA MER2_type 0 346 1 3068 152 29 19 chr13 50794219 50794740 -51078429 - MER1A DNA MER1_type 0 527 2 498 287 109 28 chr13 50794811 50795132 -51078037 - Tigger8 DNA MER2_type -109 557 211 23 33 0 0 chr13 50795409 50795439 -51077730 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chr13 50796558 50796602 -51076567 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr13 50797322 50797352 -51075817 + AT_rich Low_complexity Low_complexity 1 30 0 304 304 28 79 chr13 50797575 50797789 -51075380 + MIR SINE MIR 21 223 -39 886 226 35 0 chr13 50798771 50798970 -51074199 - MER3 DNA MER1_type -3 206 1 1632 312 144 24 chr13 50799385 50800230 -51072939 - L3 LINE CR1 -65 1512 566 255 408 94 3 chr13 50800463 50800762 -51072407 - L3 LINE CR1 -1067 510 185 1347 190 42 42 chr13 50801806 50802116 -51071053 + AluJo SINE Alu 3 312 0 23 78 0 0 chr13 50803399 50803450 -51069719 + AT_rich Low_complexity Low_complexity 1 51 0 695 308 96 31 chr13 50805094 50805737 -51067432 - Charlie7 DNA MER1_type -1927 685 1 565 314 6 11 chr13 50806825 50807000 -51066169 - MIR SINE MIR -18 244 71 370 283 108 25 chr13 50807136 50807256 -51065913 - L2 LINE L2 -6 3266 3137 21 36 0 0 chr13 50807685 50807713 -51065456 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 50808596 50808617 -51064552 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr13 50809641 50809669 -51063500 + (TTG)n Simple_repeat Simple_repeat 3 30 0 242 250 24 0 chr13 50810140 50810224 -51062945 + (TA)n Simple_repeat Simple_repeat 2 87 0 363 211 0 0 chr13 50810243 50810333 -51062836 + (TA)n Simple_repeat Simple_repeat 2 91 0 371 333 165 38 chr13 50810765 50811534 -51061635 + L2 LINE L2 1384 2250 -1064 486 0 0 0 chr13 50811536 50811590 -51061579 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 274 231 84 49 chr13 50811593 50811736 -51061433 + L2 LINE L2 2357 2504 -810 257 283 111 10 chr13 50811792 50811891 -51061278 + L2 LINE L2 2665 2773 -541 313 286 22 0 chr13 50812196 50812287 -51060882 + L2 LINE L2 3221 3313 0 2448 59 0 0 chr13 50812614 50812920 -51060249 + AluY SINE Alu 1 306 -5 27 49 0 0 chr13 50813228 50813269 -51059900 + AT_rich Low_complexity Low_complexity 1 41 0 2138 141 63 22 chr13 50813390 50813801 -51059368 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr13 50814276 50814311 -51058858 + AT_rich Low_complexity Low_complexity 1 35 0 906 123 0 39 chr13 50814552 50814707 -51058462 + L1PA11 LINE L1 6025 6173 -1 32 0 0 0 chr13 50814744 50814776 -51058393 + AT_rich Low_complexity Low_complexity 1 32 0 765 155 0 140 chr13 50815145 50815352 -51057817 - L1PA14 LINE L1 -9 6152 5975 25 51 0 0 chr13 50815510 50815549 -51057620 + AT_rich Low_complexity Low_complexity 1 39 0 237 281 26 70 chr13 50815927 50816041 -51057128 + MIR3 SINE MIR 54 162 -46 244 354 16 52 chr13 50816366 50816558 -51056611 + L2 LINE L2 2850 3034 -279 32 0 0 0 chr13 50816786 50816818 -51056351 + AT_rich Low_complexity Low_complexity 1 32 0 2475 100 22 8 chr13 50817448 50817818 -51055351 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr13 50818990 50819015 -51054154 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr13 50819149 50819184 -51053985 + AT_rich Low_complexity Low_complexity 1 35 0 1162 211 11 19 chr13 50819351 50819612 -51053557 - AluJo SINE Alu -7 305 47 188 263 101 71 chr13 50820146 50820245 -51052924 - MIR3 SINE MIR -14 194 93 189 0 0 0 chr13 50821883 50821904 -51051265 + (CATATA)n Simple_repeat Simple_repeat 4 24 0 343 220 15 0 chr13 50821985 50822117 -51051052 + (TA)n Simple_repeat Simple_repeat 1 134 0 25 65 0 0 chr13 50824667 50824713 -51048456 + AT_rich Low_complexity Low_complexity 1 46 0 690 296 152 7 chr13 50825350 50825972 -51047197 - LTR50 LTR ERVL 0 795 2 25 0 0 0 chr13 50826596 50826621 -51046548 + AT_rich Low_complexity Low_complexity 1 25 0 426 279 78 88 chr13 50827653 50827936 -51045233 - L2 LINE L2 -20 3293 3014 273 284 30 0 chr13 50828084 50828151 -51045018 + L2 LINE L2 3201 3269 -3 2212 162 33 35 chr13 50828597 50828963 -51044206 - MSTB LTR MaLR 0 426 58 2176 86 0 0 chr13 50828963 50829288 -51043881 - AluSg SINE Alu 0 327 3 2212 162 33 35 chr13 50829288 50829346 -51043823 - MSTB LTR MaLR -368 58 1 259 360 54 74 chr13 50829837 50830298 -51042871 + L2 LINE L2 2223 2674 -640 230 354 126 0 chr13 50830544 50830671 -51042498 + L2 LINE L2 2890 3032 -240 7656 19 5 2 chr13 50830943 50831949 -51041220 + L1PA3 LINE L1 5145 6152 -3 378 177 0 0 chr13 50831960 50832039 -51041130 + L1 LINE L1 4243 4321 -1825 334 269 150 31 chr13 50832404 50832564 -51040605 - MIR SINE MIR -12 250 72 29 0 0 0 chr13 50833658 50833687 -51039482 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 50834250 50834272 -51038897 + AT_rich Low_complexity Low_complexity 1 22 0 1962 103 64 0 chr13 50835758 50836040 -51037129 + AluSx SINE Alu 13 312 0 360 317 62 19 chr13 50836139 50836347 -51036822 + MIR SINE MIR 46 262 0 2308 72 0 3 chr13 50837402 50837708 -51035461 + AluY SINE Alu 1 305 -6 317 322 107 27 chr13 50837852 50838001 -51035168 - MER5B DNA MER1_type 0 178 18 25 75 0 0 chr13 50838718 50838771 -51034398 + AT_rich Low_complexity Low_complexity 1 53 0 36 0 0 0 chr13 50838891 50838927 -51034242 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 50839474 50839496 -51033673 + AT_rich Low_complexity Low_complexity 1 22 0 184 294 147 63 chr13 50839908 50840051 -51033118 + L2 LINE L2 2219 2373 -941 182 33 67 0 chr13 50840475 50840505 -51032664 + T-rich Low_complexity Low_complexity 4 35 0 565 292 94 0 chr13 50840552 50840723 -51032446 - MER5A DNA MER1_type 0 189 3 534 274 150 0 chr13 50840826 50840979 -51032190 + MER69A DNA AcHobo 2 177 0 452 255 78 65 chr13 50841533 50841764 -51031405 - MIR SINE MIR 0 262 29 246 125 16 31 chr13 50843507 50843571 -51029598 + CT-rich Low_complexity Low_complexity 3 65 0 38 22 0 0 chr13 50843721 50843766 -51029403 + AT_rich Low_complexity Low_complexity 1 45 0 438 247 128 45 chr13 50844546 50844722 -51028447 - L1ME4a LINE L1 -3 6118 5958 297 0 0 0 chr13 50844722 50844755 -51028414 + (CA)n Simple_repeat Simple_repeat 2 34 0 438 247 128 45 chr13 50844755 50844914 -51028255 - L1ME4a LINE L1 -163 5958 5755 180 423 24 24 chr13 50845842 50845965 -51027204 + L2 LINE L2 265 387 -2927 256 325 89 19 chr13 50847310 50847467 -51025702 + L2 LINE L2 3101 3268 -4 231 343 46 23 chr13 50847600 50847785 -51025384 - MIR SINE MIR -46 216 28 2287 105 3 0 chr13 50849796 50850101 -51023068 + AluSc SINE Alu 1 306 -3 2441 57 0 7 chr13 50850646 50850947 -51022222 - AluY SINE Alu -6 305 7 283 306 82 7 chr13 50850995 50851142 -51022027 + L2 LINE L2 3141 3298 -15 209 250 71 18 chr13 50852760 50852816 -51020353 + L2 LINE L2 3211 3269 -3 2072 133 7 0 chr13 50853024 50853317 -51019852 - AluSx SINE Alu -16 296 2 201 196 0 0 chr13 50853359 50853405 -51019764 + (TATG)n Simple_repeat Simple_repeat 3 48 0 2230 86 33 0 chr13 50853576 50853879 -51019290 - AluSp SINE Alu 0 313 1 211 288 0 17 chr13 50855412 50855471 -51017698 + GA-rich Low_complexity Low_complexity 3 60 0 2369 207 103 19 chr13 50855840 50856604 -51016565 - MER63C DNA MER1_type 0 931 54 585 247 47 1 chr13 50857112 50857294 -51015875 + L1MA10 LINE L1 5982 6332 -2 2155 38 0 0 chr13 50857541 50857806 -51015363 - L1PA3 LINE L1 -2232 3914 3650 12209 30 1 0 chr13 50857806 50860037 -51013132 + L1PA3 LINE L1 3924 6152 -3 580 118 0 0 chr13 50861536 50861642 -51011527 - AluSg/x SINE Alu 0 301 196 852 112 17 73 chr13 50861851 50862030 -51011139 - L1MA4A LINE L1 -201 6102 5934 728 136 0 0 chr13 50862030 50862137 -51011032 + L1MA4A LINE L1 6179 6296 -7 1753 128 81 4 chr13 50862881 50863154 -51010015 + AluSx SINE Alu 1 294 -18 1377 180 0 68 chr13 50863625 50863920 -51009249 - AluJb SINE Alu -35 277 3 2382 95 0 0 chr13 50865437 50865741 -51007428 - AluSg SINE Alu -6 304 1 21 0 0 0 chr13 50865750 50865771 -51007398 + AT_rich Low_complexity Low_complexity 1 21 0 560 132 47 19 chr13 50866132 50866238 -51006931 - L1PA15 LINE L1 0 6165 6057 204 158 26 0 chr13 50866762 50866800 -51006369 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 57 39 0 0 chr13 50867004 50867082 -51006087 + AT_rich Low_complexity Low_complexity 1 78 0 370 239 0 0 chr13 50870157 50870228 -51002941 + MER21B LTR ERV1 14 84 -779 813 286 104 10 chr13 50870252 50870549 -51002620 + MER21B LTR ERV1 16 340 -523 2275 204 18 5 chr13 50870613 50871059 -51002110 + LTR45B LTR ERV1 3 454 -35 1001 259 62 45 chr13 50871100 50871455 -51001714 + MER21B LTR ERV1 418 778 -85 818 192 0 0 chr13 50871631 50871782 -51001387 + MLT1A1 LTR MaLR 4 154 -211 697 175 0 8 chr13 50871792 50871912 -51001257 + FLAM_A SINE Alu 7 125 -17 806 225 14 36 chr13 50871914 50872136 -51001033 + MLT1A1 LTR MaLR 149 365 0 1047 223 20 0 chr13 50872626 50872828 -51000341 - Tigger7 DNA MER2_type -496 209 4 2452 78 0 0 chr13 50873008 50873317 -50999852 + AluY SINE Alu 1 309 -2 453 278 131 47 chr13 50873345 50873665 -50999504 + MLT1J2 LTR MaLR 73 419 -31 1359 97 18 44 chr13 50873672 50873899 -50999270 - THE1C LTR MaLR 0 375 155 194 265 20 0 chr13 50874119 50874168 -50999001 - L2 LINE L2 -4 3268 3219 334 388 47 19 chr13 50874587 50874950 -50998219 - L2 LINE L2 -528 2786 2414 201 119 24 24 chr13 50876996 50877038 -50996131 + A-rich Low_complexity Low_complexity 1 42 0 245 226 0 48 chr13 50877297 50877381 -50995788 + T-rich Low_complexity Low_complexity 6 85 0 21 0 0 0 chr13 50877603 50877624 -50995545 + AT_rich Low_complexity Low_complexity 1 21 0 274 301 53 45 chr13 50880166 50880299 -50992870 + L2 LINE L2 3134 3267 -5 2327 75 3 3 chr13 50882841 50883134 -50990035 - AluSg SINE Alu -2 308 16 403 345 70 5 chr13 50883361 50883580 -50989589 - MIR SINE MIR -1 261 30 414 250 50 21 chr13 50885276 50885416 -50987753 - MIR SINE MIR 0 262 119 1361 199 54 0 chr13 50886988 50887264 -50985905 + AluJo SINE Alu 1 291 -21 687 179 0 0 chr13 50887329 50887452 -50985717 + AluJb SINE Alu 1 123 -189 598 317 59 5 chr13 50888030 50888251 -50984918 + MIR SINE MIR 20 252 -10 252 77 0 0 chr13 50888253 50888292 -50984877 + (CAT)n Simple_repeat Simple_repeat 2 40 0 241 323 77 39 chr13 50889088 50889243 -50983926 + MIR SINE MIR 29 189 -73 370 239 138 50 chr13 50890658 50890817 -50982352 - L2 LINE L2 0 3313 3141 227 56 0 74 chr13 50890817 50890871 -50982298 + (TA)n Simple_repeat Simple_repeat 2 51 0 408 246 118 43 chr13 50890876 50891063 -50982106 - L2 LINE L2 -157 3156 2956 214 182 0 0 chr13 50891314 50891358 -50981811 + T-rich Low_complexity Low_complexity 1 44 0 251 344 59 18 chr13 50891456 50891669 -50981500 + MIR SINE MIR 14 240 -22 325 372 24 6 chr13 50891687 50891851 -50981318 - MIR SINE MIR -49 213 47 192 97 0 0 chr13 50892824 50892855 -50980314 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr13 50892868 50892893 -50980276 + (TA)n Simple_repeat Simple_repeat 2 26 0 945 309 18 15 chr13 50894471 50894807 -50978362 - MLT1I LTR MaLR -6 403 67 342 230 87 81 chr13 50894827 50894988 -50978181 - MIR SINE MIR -12 250 89 509 68 14 0 chr13 50896350 50896424 -50976745 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2361 85 0 0 chr13 50897698 50897992 -50975177 - AluSq SINE Alu -19 294 1 22 35 0 0 chr13 50898131 50898160 -50975009 + AT_rich Low_complexity Low_complexity 1 29 0 794 207 122 15 chr13 50898714 50898985 -50974184 - MER33 DNA MER1_type -23 301 2 29 47 0 0 chr13 50899045 50899088 -50974081 + AT_rich Low_complexity Low_complexity 1 43 0 53 49 0 0 chr13 50899691 50899772 -50973397 + AT_rich Low_complexity Low_complexity 1 81 0 336 326 80 13 chr13 50899944 50900129 -50973040 - MIR SINE MIR -58 204 11 52 30 0 0 chr13 50901520 50901586 -50971583 + AT_rich Low_complexity Low_complexity 1 66 0 277 267 116 12 chr13 50902319 50902405 -50970764 - MER5A DNA MER1_type -46 143 49 238 330 58 0 chr13 50902880 50902983 -50970186 + L1MC/D LINE L1 5536 5644 -2164 2055 125 13 0 chr13 50903069 50903374 -50969795 + AluSx SINE Alu 1 309 -3 1484 211 99 21 chr13 50903571 50904082 -50969087 + MER39 LTR ERV1 4 707 0 341 315 103 30 chr13 50904530 50904695 -50968474 - MER5A DNA MER1_type -6 183 7 21 36 0 0 chr13 50904771 50904799 -50968370 + AT_rich Low_complexity Low_complexity 1 28 0 796 46 18 0 chr13 50905489 50905598 -50967571 + (TCTA)n Simple_repeat Simple_repeat 2 112 0 1566 167 75 23 chr13 50905601 50905948 -50967221 + MLT1A1 LTR MaLR 1 365 0 277 210 16 16 chr13 50907607 50907669 -50965500 - MIR SINE MIR -16 246 185 644 316 166 25 chr13 50908405 50909083 -50964086 + L2 LINE L2 2532 3313 0 540 250 109 32 chr13 50909719 50909939 -50963230 + LTR16B LTR ERVL 228 464 0 710 119 0 0 chr13 50910486 50910587 -50962582 + AluSg SINE Alu 1 101 -209 2835 190 27 96 chr13 50910833 50911660 -50961509 + MER4E LTR ERV1 1 770 -9 2064 132 3 0 chr13 50912745 50913048 -50960121 + AluSq SINE Alu 1 304 -9 2428 204 42 39 chr13 50913398 50914020 -50959149 - L1MA10 LINE L1 -2 6332 5709 22 56 0 0 chr13 50914666 50914702 -50958467 + AT_rich Low_complexity Low_complexity 1 36 0 3733 164 116 13 chr13 50915460 50916168 -50957001 + LTR39 LTR ERV1 3 783 0 2371 75 7 3 chr13 50916177 50916485 -50956684 + AluSc SINE Alu 1 309 0 267 31 0 0 chr13 50916486 50916518 -50956651 + (TA)n Simple_repeat Simple_repeat 2 33 0 1222 194 89 29 chr13 50917694 50918235 -50954934 + Tigger6a DNA MER2_type 5 619 -464 1226 156 33 51 chr13 50918345 50918621 -50954548 + Tigger6a DNA MER2_type 813 1083 0 260 264 58 23 chr13 50919737 50919824 -50953345 - L2 LINE L2 0 3313 3224 190 225 0 0 chr13 50921498 50921538 -50951631 + L2 LINE L2 3273 3312 -1 542 238 122 16 chr13 50921586 50921752 -50951417 - MER5A DNA MER1_type 0 189 4 278 313 35 35 chr13 50922108 50922223 -50950946 - MIR SINE MIR -119 143 29 26 30 0 0 chr13 50924387 50924420 -50948749 + AT_rich Low_complexity Low_complexity 1 33 0 2023 128 3 0 chr13 50924452 50924734 -50948435 + AluSq SINE Alu 4 286 -27 21 36 0 0 chr13 50924734 50924762 -50948407 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 50926646 50926686 -50946483 + AT_rich Low_complexity Low_complexity 1 40 0 301 281 245 0 chr13 50926855 50926994 -50946175 + MIR SINE MIR 57 229 -33 580 152 136 0 chr13 50928022 50928147 -50945022 + L1MC1 LINE L1 6192 6333 0 1901 137 10 33 chr13 50928243 50928549 -50944620 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr13 50928559 50928580 -50944589 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 50928946 50928967 -50944202 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 50929213 50929241 -50943928 + AT_rich Low_complexity Low_complexity 1 28 0 216 279 16 0 chr13 50932941 50933002 -50940167 + (TATG)n Simple_repeat Simple_repeat 2 63 0 312 346 48 32 chr13 50934706 50934894 -50938275 + L1ME LINE L1 5499 5689 -432 2389 71 0 3 chr13 50935990 50936286 -50936883 - AluY SINE Alu -16 295 1 250 247 12 0 chr13 50937303 50937388 -50935781 + (TA)n Simple_repeat Simple_repeat 2 87 0 4601 212 74 74 chr13 50937981 50939734 -50933435 + MER52A LTR ERV1 3 1755 0 22 35 0 0 chr13 50939766 50939795 -50933374 + AT_rich Low_complexity Low_complexity 1 29 0 1922 112 31 7 chr13 50941679 50941973 -50931196 + AluSg SINE Alu 1 301 -9 251 339 119 11 chr13 50942063 50942240 -50930929 - MIR SINE MIR -44 218 23 339 315 190 10 chr13 50942273 50942473 -50930696 + L2 LINE L2 3077 3312 -1 26 50 0 0 chr13 50943288 50943328 -50929841 + AT_rich Low_complexity Low_complexity 1 40 0 205 352 120 0 chr13 50943676 50943784 -50929385 - MIR SINE MIR -19 243 123 405 198 0 0 chr13 50944056 50944142 -50929027 + CT-rich Low_complexity Low_complexity 4 89 0 1223 149 8 55 chr13 50944153 50944388 -50928781 - AluJb SINE Alu -8 304 81 2141 63 0 0 chr13 50944992 50945263 -50927906 - AluY SINE Alu -19 292 22 608 232 52 10 chr13 50945609 50945834 -50927335 - MER106B DNA MER1_type -3 1056 1 768 227 41 45 chr13 50947040 50947309 -50925860 + LTR37A LTR ERV1 129 396 -30 367 268 83 25 chr13 50947360 50947517 -50925652 + MIR SINE MIR 3 168 -94 252 308 22 0 chr13 50947529 50947620 -50925549 + MIR SINE MIR 114 206 -56 261 0 0 0 chr13 50951625 50951654 -50921515 + (TAA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr13 50952604 50952632 -50920537 + AT_rich Low_complexity Low_complexity 1 28 0 181 379 19 29 chr13 50953192 50953295 -50919874 + MIR SINE MIR 34 135 -73 283 204 87 0 chr13 50953840 50953910 -50919259 - MIR SINE MIR -85 177 100 2002 112 0 4 chr13 50953933 50954249 -50918920 + AluSc SINE Alu 4 318 0 29 0 0 0 chr13 50955305 50955334 -50917835 + AT_rich Low_complexity Low_complexity 1 29 0 227 204 93 0 chr13 50956373 50956427 -50916742 - MIR SINE MIR -103 105 47 273 305 176 14 chr13 50956430 50956640 -50916529 + MIR SINE MIR 9 252 -10 363 192 0 0 chr13 50957263 50957336 -50915833 + (TG)n Simple_repeat Simple_repeat 2 74 0 196 211 0 70 chr13 50957353 50957410 -50915759 - MIR SINE MIR -26 236 184 403 276 107 56 chr13 50957422 50957618 -50915551 - MIR SINE MIR -55 207 2 1830 146 4 4 chr13 50958006 50958307 -50914862 + AluSg SINE Alu 1 301 0 330 26 0 0 chr13 50959101 50959114 -50914055 + (TG)n Simple_repeat Simple_repeat 1 52 0 330 26 0 0 chr13 50959114 50959153 -50914016 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr13 50959984 50960009 -50913160 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr13 50960673 50960696 -50912473 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 213 132 0 0 chr13 50960835 50960873 -50912296 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 222 37 0 chr13 50961052 50961133 -50912036 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 0 0 0 chr13 50961349 50961380 -50911789 + AT_rich Low_complexity Low_complexity 1 31 0 3088 86 0 86 chr13 50961887 50962390 -50910779 + LTR46 LTR ERV1 1 460 0 191 411 20 14 chr13 50963716 50963862 -50909307 + L2 LINE L2 2917 3063 -209 459 308 100 17 chr13 50963946 50964235 -50908934 + L3 LINE CR1 639 951 -626 439 335 119 17 chr13 50964671 50964964 -50908205 + L3 LINE CR1 1250 1572 -5 186 43 0 0 chr13 50966027 50966050 -50907119 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 291 333 68 0 chr13 50966511 50966643 -50906526 - MER104 DNA Tc2 -4 176 36 23 68 0 0 chr13 50966656 50966700 -50906469 + AT_rich Low_complexity Low_complexity 1 44 0 2065 154 3 47 chr13 50967585 50967949 -50905220 + MER7A DNA MER2_type 1 346 0 29 47 0 0 chr13 50968259 50968302 -50904867 + AT_rich Low_complexity Low_complexity 1 43 0 947 43 0 0 chr13 50968581 50968698 -50904471 + L1PA5 LINE L1 6037 6153 -1 481 373 24 14 chr13 50969686 50969898 -50903271 + MIR SINE MIR 49 262 0 23 0 0 0 chr13 50969922 50969945 -50903224 + AT_rich Low_complexity Low_complexity 1 23 0 2358 102 65 3 chr13 50970006 50970359 -50902810 + MER51B LTR ERV1 3 377 0 1517 57 0 0 chr13 50971732 50972064 -50901105 + (G)n Simple_repeat Simple_repeat 1 332 0 479 253 32 38 chr13 50972322 50972480 -50900689 - MER5B DNA MER1_type 0 178 22 791 162 0 0 chr13 50973101 50973218 -50899951 + FLAM_C SINE Alu 1 117 -16 21 0 0 0 chr13 50973229 50973250 -50899919 + AT_rich Low_complexity Low_complexity 1 21 0 2065 120 0 0 chr13 50973250 50973534 -50899635 - AluSg SINE Alu -26 284 1 23 0 0 0 chr13 50973771 50973794 -50899375 + AT_rich Low_complexity Low_complexity 1 23 0 216 344 31 0 chr13 50974295 50974359 -50898810 + L2 LINE L2 3228 3293 -20 2081 110 0 31 chr13 50974515 50974833 -50898336 + AluSg SINE Alu 2 309 -1 231 170 0 0 chr13 50974958 50975005 -50898164 + A-rich Low_complexity Low_complexity 1 47 0 180 0 0 0 chr13 50975523 50975543 -50897626 + (TAA)n Simple_repeat Simple_repeat 2 21 0 445 297 113 21 chr13 50981191 50981430 -50891739 + MIR SINE MIR 1 261 -1 247 204 133 41 chr13 50981763 50981861 -50891308 - MIR SINE MIR -51 211 105 21 36 0 0 chr13 50981955 50981983 -50891186 + AT_rich Low_complexity Low_complexity 1 28 0 1817 153 40 10 chr13 50981986 50982286 -50890883 - AluSx SINE Alu -3 309 1 1443 189 7 30 chr13 50985118 50985419 -50887750 - AluJo SINE Alu -18 294 1 511 171 0 0 chr13 50986121 50986203 -50886966 + AluJ/FLAM SINE Alu 1 82 -230 1360 191 52 0 chr13 50986258 50986530 -50886639 + AluJb SINE Alu 1 286 -26 1638 124 4 35 chr13 50986650 50986908 -50886261 - AluSx SINE Alu -13 299 50 28 0 0 0 chr13 50987716 50987744 -50885425 + AT_rich Low_complexity Low_complexity 1 28 0 375 317 16 0 chr13 50987846 50987969 -50885200 + L2 LINE L2 2922 3046 -267 992 160 64 14 chr13 50988020 50988239 -50884930 + LTR1 LTR ERV1 18 247 -538 2949 134 71 13 chr13 50988351 50988889 -50884280 + LTR1 LTR ERV1 217 785 0 223 292 146 43 chr13 50988920 50989105 -50884064 + L2 LINE L2 3110 3313 0 195 256 166 80 chr13 50989169 50989368 -50883801 + L2 LINE L2 3098 3313 0 1438 206 63 23 chr13 50990340 50990689 -50882480 + MLT1A1 LTR MaLR 1 363 -2 274 367 28 0 chr13 50990977 50991086 -50882083 - MIR SINE MIR -74 188 77 2318 65 0 7 chr13 50992208 50992502 -50880667 + AluY SINE Alu 1 292 -19 2133 130 0 0 chr13 50996240 50996548 -50876621 + AluSg1 SINE Alu 2 309 0 313 288 91 55 chr13 50996804 50997023 -50876146 + L2 LINE L2 3078 3304 -9 30 27 0 0 chr13 50997027 50997064 -50876105 + AT_rich Low_complexity Low_complexity 1 37 0 320 296 82 20 chr13 50998064 50998260 -50874909 + L2 LINE L2 3036 3243 -70 249 208 151 57 chr13 50998363 50998469 -50874700 + MIR SINE MIR 89 205 -3 648 299 23 32 chr13 50999145 50999362 -50873807 + MIR SINE MIR 13 227 -35 1348 194 10 35 chr13 51000394 51000683 -50872486 + AluJo SINE Alu 1 282 -30 21 71 0 0 chr13 51001288 51001330 -50871839 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr13 51001682 51001705 -50871464 + AT_rich Low_complexity Low_complexity 1 23 0 1964 143 0 0 chr13 51002591 51002891 -50870278 + AluSx SINE Alu 1 300 -12 406 311 61 20 chr13 51003629 51003825 -50869344 + MIR SINE MIR 47 250 -12 1985 120 3 3 chr13 51004546 51004847 -50868322 + AluSx SINE Alu 1 301 -11 231 382 66 7 chr13 51007267 51007403 -50865766 + MIR SINE MIR 105 248 -14 216 341 160 32 chr13 51007540 51008141 -50865028 + L2 LINE L2 1683 2360 -954 295 330 40 10 chr13 51008564 51008664 -50864505 + MIR SINE MIR 52 154 -108 248 320 51 58 chr13 51008921 51009077 -50864092 + L2 LINE L2 2898 3052 -220 269 301 22 66 chr13 51009258 51009394 -50863775 + L2 LINE L2 3170 3299 -14 292 264 58 41 chr13 51009480 51009601 -50863568 - MIR SINE MIR -115 147 25 24 0 0 0 chr13 51009883 51009907 -50863262 + AT_rich Low_complexity Low_complexity 1 24 0 188 326 63 0 chr13 51011642 51011737 -50861432 - L2 LINE L2 -1406 1908 1808 1415 308 131 48 chr13 51012098 51012940 -50860229 + L2 LINE L2 1877 2788 -526 22 35 0 0 chr13 51013869 51013898 -50859271 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 51014004 51014036 -50859133 + AT_rich Low_complexity Low_complexity 1 32 0 280 116 0 0 chr13 51014073 51014116 -50859053 + MER85 DNA T2_type 1 43 -96 242 67 0 0 chr13 51014198 51014228 -50858941 + MER85 DNA T2_type 105 134 -5 1641 171 3 11 chr13 51014747 51015033 -50858136 + AluJb SINE Alu 3 286 -26 2192 111 3 0 chr13 51016032 51016330 -50856839 - AluSp SINE Alu -14 299 1 27 0 0 0 chr13 51016388 51016415 -50856754 + AT_rich Low_complexity Low_complexity 1 27 0 564 189 230 27 chr13 51016710 51016858 -50856311 - MER5A DNA MER1_type -3 186 9 28 48 0 0 chr13 51017928 51017970 -50855199 + AT_rich Low_complexity Low_complexity 1 42 0 1140 134 8 86 chr13 51018064 51018332 -50854837 - L1MA4 LINE L1 -1 6299 6053 21 36 0 0 chr13 51020757 51020785 -50852384 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 51023172 51023212 -50849957 + (TA)n Simple_repeat Simple_repeat 2 41 0 281 340 19 0 chr13 51023212 51023318 -50849851 - MIR SINE MIR -71 191 84 22 0 0 0 chr13 51023992 51024014 -50849155 + AT_rich Low_complexity Low_complexity 1 22 0 262 239 55 119 chr13 51024037 51024146 -50849023 - L2 LINE L2 -11 3261 3160 279 54 0 0 chr13 51024923 51024960 -50848209 + (TA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr13 51026977 51027001 -50846168 + AT_rich Low_complexity Low_complexity 1 24 0 372 329 125 0 chr13 51027307 51027459 -50845710 - MER5A DNA MER1_type -3 186 16 215 185 0 19 chr13 51030698 51030752 -50842417 + CT-rich Low_complexity Low_complexity 3 55 0 21 36 0 0 chr13 51030845 51030873 -50842296 + GC_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 51031860 51031889 -50841280 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 51032020 51032047 -50841122 + AT_rich Low_complexity Low_complexity 1 27 0 329 253 116 76 chr13 51033175 51033285 -50839884 - L1MC4 LINE L1 -70 7891 7787 2103 70 35 0 chr13 51033285 51033569 -50839600 + AluY SINE Alu 1 294 -17 329 253 116 76 chr13 51033569 51033995 -50839174 - L1MC4 LINE L1 -174 7787 7334 438 179 58 81 chr13 51033999 51034030 -50839139 - MER33 DNA MER1_type -2261 363 333 1901 109 46 0 chr13 51034030 51034313 -50838856 + AluSq SINE Alu 3 298 -15 438 179 58 81 chr13 51034313 51034454 -50838715 - MER33 DNA MER1_type -2291 333 195 267 254 0 0 chr13 51034632 51034687 -50838482 + MER33 DNA MER1_type 56 110 -214 2401 118 5 18 chr13 51034846 51035229 -50837940 - MER41A LTR ERV1 -176 378 1 268 257 74 80 chr13 51035577 51035752 -50837417 - L1MEd LINE L1 -5611 508 335 329 207 98 0 chr13 51035900 51035982 -50837187 + MLT1G1 LTR MaLR 506 595 0 2230 108 3 0 chr13 51036080 51036377 -50836792 - AluSx SINE Alu -14 298 1 21 57 0 0 chr13 51036431 51036466 -50836703 + AT_rich Low_complexity Low_complexity 1 35 0 321 281 152 48 chr13 51036492 51036827 -50836342 - L1M4 LINE L1 -2603 3543 3174 564 189 230 27 chr13 51039070 51039218 -50833951 + MER5A DNA MER1_type 9 186 -3 27 0 0 0 chr13 51039513 51039540 -50833629 + AT_rich Low_complexity Low_complexity 1 27 0 2173 121 3 0 chr13 51039598 51039896 -50833273 + AluSq SINE Alu 1 299 -14 1094 298 57 38 chr13 51039896 51040373 -50832796 - MLT1F LTR MaLR -56 486 1 316 329 14 68 chr13 51040382 51040604 -50832565 + HAL1 LINE L1 984 1193 -1314 2250 107 0 12 chr13 51040960 51041296 -50831873 - L1PB1 LINE L1 0 6151 5820 266 164 0 33 chr13 51041314 51041375 -50831794 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 180 0 0 0 chr13 51041378 51041398 -50831771 + (TG)n Simple_repeat Simple_repeat 2 21 0 283 100 0 0 chr13 51041406 51041446 -50831723 - L1PB1 LINE L1 -371 5780 5741 532 253 67 0 chr13 51041555 51041705 -50831464 + MER3 DNA MER1_type 50 209 0 186 302 193 40 chr13 51041711 51041986 -50831183 - L2 LINE L2 -55 3258 2942 279 293 61 20 chr13 51042273 51042372 -50830797 - MIR3 SINE MIR -11 197 95 224 252 157 52 chr13 51043462 51043577 -50829592 + L2 LINE L2 3187 3313 0 389 269 134 21 chr13 51046085 51046330 -50826839 - L1ME LINE L1 -390 5731 5452 25 75 0 0 chr13 51047065 51047118 -50826051 + AT_rich Low_complexity Low_complexity 1 53 0 27 0 0 0 chr13 51047263 51047290 -50825879 + AT_rich Low_complexity Low_complexity 1 27 0 186 154 31 46 chr13 51047298 51047363 -50825806 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1369 192 4 12 chr13 51047592 51047837 -50825332 + AluJo SINE Alu 1 243 -69 22 0 0 0 chr13 51049572 51049594 -50823575 + AT_rich Low_complexity Low_complexity 1 22 0 309 118 0 0 chr13 51050932 51050983 -50822186 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 344 110 25 chr13 51051054 51051217 -50821952 - MIR SINE MIR -15 247 71 23 33 0 0 chr13 51051935 51051965 -50821204 + AT_rich Low_complexity Low_complexity 1 30 0 563 219 168 26 chr13 51052070 51052225 -50820944 + MER20 DNA MER1_type 9 185 -34 972 234 202 55 chr13 51052227 51052762 -50820407 + MLT1E3 LTR MaLR 3 617 -7 267 279 13 0 chr13 51052928 51053007 -50820162 + MER103 DNA DNA 43 122 -44 1653 186 14 11 chr13 51053272 51053578 -50819591 - AluJo SINE Alu 0 308 2 296 272 18 95 chr13 51054758 51054927 -50818242 - MLT1I LTR MaLR -10 399 244 183 80 0 0 chr13 51055308 51055333 -50817836 + (TAAAAA)n Simple_repeat Simple_repeat 5 29 0 201 219 24 0 chr13 51055462 51055503 -50817666 + L2 LINE L2 3267 3308 -5 21 57 0 0 chr13 51055541 51055576 -50817593 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr13 51056754 51056775 -50816394 + (TATG)n Simple_repeat Simple_repeat 3 23 0 415 288 30 82 chr13 51056945 51057310 -50815859 + MLT1J LTR MaLR 13 358 -153 310 148 35 35 chr13 51058934 51059049 -50814120 + (TA)n Simple_repeat Simple_repeat 1 115 0 4057 215 56 6 chr13 51060238 51061227 -50811942 + L1 LINE L1 4304 5341 -805 345 136 0 0 chr13 51062584 51062650 -50810519 + (CA)n Simple_repeat Simple_repeat 1 66 0 2092 111 34 45 chr13 51063055 51063434 -50809735 - THE1C LTR MaLR 0 375 1 1216 228 127 93 chr13 51064651 51065406 -50807763 + LTR1B LTR ERV1 4 784 -42 387 354 81 46 chr13 51065529 51065964 -50807205 + L2 LINE L2 1524 1973 -1341 188 338 12 12 chr13 51068171 51068251 -50804918 - MIR SINE MIR -114 148 69 1832 154 3 26 chr13 51068843 51069154 -50804015 - AluJo SINE Alu -7 305 2 319 344 8 8 chr13 51070169 51070294 -50802875 + HERV16 LTR ERVL 338 462 -4534 1516 367 67 20 chr13 51070388 51072101 -50801068 + HERV16 LTR ERVL 2832 4700 -1064 555 307 171 21 chr13 51072106 51072617 -50800552 - MLT1G1 LTR MaLR -2 553 9 481 329 26 13 chr13 51072750 51072984 -50800185 + HERV16 LTR ERVL 4920 5156 -608 234 0 0 0 chr13 51073848 51073874 -50799295 + (CA)n Simple_repeat Simple_repeat 1 26 0 229 266 31 0 chr13 51074645 51074709 -50798460 - MIR SINE MIR -10 252 187 2272 62 7 0 chr13 51075653 51075942 -50797227 - AluY SINE Alu -13 298 8 542 322 80 8 chr13 51076237 51076501 -50796668 + L1MB8 LINE L1 5880 6162 -16 347 306 0 10 chr13 51076601 51076699 -50796470 + MIR SINE MIR 92 188 -74 36 53 0 0 chr13 51078490 51078547 -50794622 + AT_rich Low_complexity Low_complexity 1 57 0 335 193 0 0 chr13 51078871 51078928 -50794241 - L2 LINE L2 -1 3312 3256 26 0 0 0 chr13 51081584 51081610 -50791559 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 51082905 51082940 -50790229 + AT_rich Low_complexity Low_complexity 1 35 0 1012 143 0 0 chr13 51086406 51086553 -50786616 - AluJo SINE Alu -159 153 7 2265 91 20 0 chr13 51086578 51086876 -50786293 - AluSg SINE Alu -6 304 1 473 257 110 45 chr13 51087711 51087956 -50785213 + MIR SINE MIR 1 261 -1 523 217 51 22 chr13 51091336 51091474 -50781695 + L1ME LINE L1 5403 5544 -620 1014 182 53 151 chr13 51091496 51092078 -50781091 - L1MDa LINE L1 -4719 1821 1297 1692 231 31 75 chr13 51092139 51092688 -50780481 - L1MDa LINE L1 -6000 540 16 2406 204 19 41 chr13 51093337 51093852 -50779317 + Tigger7 DNA MER2_type 22 525 -208 609 163 0 0 chr13 51093846 51093938 -50779231 + Tigger7 DNA MER2_type 2396 2487 0 * 230 342 87 43 chr13 51094119 51094489 -50778680 + L2 LINE L2 953 3294 -19 545 252 52 0 chr13 51095795 51095930 -50777239 - LTR16A LTR ERVL -10 440 299 589 339 25 8 chr13 51096038 51096280 -50776889 - LTR16A LTR ERVL -178 272 27 506 294 103 55 chr13 51096294 51096661 -50776508 + MLT1J LTR MaLR 127 511 0 260 219 122 37 chr13 51097751 51097833 -50775336 + MLT1J2 LTR MaLR 44 132 -318 308 294 49 28 chr13 51097962 51098105 -50775064 + MLT1J LTR MaLR 329 474 -37 27 0 0 0 chr13 51099731 51099758 -50773411 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chr13 51099983 51100025 -50773144 + AT_rich Low_complexity Low_complexity 1 42 0 1347 113 31 18 chr13 51101423 51101645 -50771524 - L1PA11 LINE L1 0 6174 5950 28 0 0 0 chr13 51101774 51101802 -50771367 + AT_rich Low_complexity Low_complexity 1 28 0 895 234 214 64 chr13 51102255 51102726 -50770443 + MLT1F LTR MaLR 1 542 0 237 236 83 14 chr13 51103858 51103930 -50769239 - MIR3 SINE MIR -1 207 131 339 164 0 0 chr13 51104115 51104176 -50768993 + (TA)n Simple_repeat Simple_repeat 1 61 0 255 231 179 0 chr13 51105273 51105351 -50767818 - L1M3a LINE L1 -5092 863 772 373 300 58 0 chr13 51105620 51105740 -50767429 + HAL1 LINE L1 5 131 -2376 390 327 210 31 chr13 51105785 51106232 -50766937 + HAL1 LINE L1 188 714 -1793 239 319 11 0 chr13 51106287 51106381 -50766788 + HAL1 LINE L1 813 907 -1600 * 469 273 60 76 chr13 51106373 51106688 -50766481 + HAL1 LINE L1 1815 2124 -383 1664 141 61 14 chr13 51108220 51108541 -50764628 - AluSx SINE Alu 0 334 1 2112 134 0 0 chr13 51108738 51109037 -50764132 + AluSx SINE Alu 1 299 -13 502 287 68 48 chr13 51109246 51109556 -50763613 - HsTC2 DNA Tc2 -1089 809 494 2512 38 0 0 chr13 51109620 51109911 -50763258 - AluY SINE Alu -20 291 1 611 209 32 25 chr13 51110893 51111051 -50762118 + MLT1D LTR MaLR 1 159 -346 232 125 0 0 chr13 51111058 51111090 -50762079 - LTR26B LTR ERV1 0 531 500 1353 135 56 75 chr13 51111090 51111357 -50761812 - LTR26B LTR ERV1 -269 262 1 1031 217 55 32 chr13 51111357 51111692 -50761477 + MLT1D LTR MaLR 161 495 -10 1888 222 31 5 chr13 51111846 51112261 -50760908 + MSTB LTR MaLR 1 426 0 1663 222 52 34 chr13 51112488 51112984 -50760185 - MLT1D LTR MaLR 0 505 1 5903 100 3 0 chr13 51113603 51114742 -50758427 - L1PA11 LINE L1 0 6174 5055 207 250 40 66 chr13 51114868 51114944 -50758225 + MER91C DNA MER1_type 33 106 -34 1815 216 96 18 chr13 51116933 51117391 -50755778 - MLT1D LTR MaLR -8 497 4 1908 121 31 62 chr13 51117403 51117791 -50755378 - L1MA8 LINE L1 0 6291 5916 1626 236 50 74 chr13 51118542 51119031 -50754138 + MLT1F LTR MaLR 1 477 -65 1987 123 0 3 chr13 51119031 51119316 -50753853 - AluSg SINE Alu -26 284 1 1626 236 50 74 chr13 51119316 51119381 -50753788 + MLT1F LTR MaLR 477 542 0 364 308 137 42 chr13 51119416 51119897 -50753272 - HAL1 LINE L1 -1561 946 420 1351 179 3 67 chr13 51120168 51120519 -50752650 - AluSx SINE Alu 0 312 1 468 238 8 8 chr13 51120667 51120793 -50752376 - Harlequin LTR ERV1 -1200 5449 5324 289 303 41 8 chr13 51121205 51121327 -50751842 - Harlequin LTR ERV1 -3742 3154 3029 4518 310 49 55 chr13 51121545 51125941 -50747228 - Harlequin LTR ERV1 -2029 5756 966 496 337 0 16 chr13 51126169 51126356 -50746813 - Harlequin LTR ERV1 -6815 970 787 320 313 80 11 chr13 51126613 51126789 -50746380 - Harlequin LTR ERV1 -6282 367 180 7421 91 1 7 chr13 51127897 51128989 -50744180 - L1P LINE L1 -743 5403 4336 234 62 0 0 chr13 51130122 51130154 -50743015 + (CA)n Simple_repeat Simple_repeat 2 33 0 372 297 73 31 chr13 51130306 51130784 -50742385 - L1ME LINE L1 -337 5833 5280 1388 221 127 52 chr13 51131563 51132043 -50741126 + LTR40a LTR ERVL 2 517 -2 664 147 28 0 chr13 51133936 51134045 -50739124 - MSTB LTR MaLR -49 377 266 238 371 0 0 chr13 51135248 51135318 -50737851 - L3 LINE CR1 -104 1473 1404 193 310 203 19 chr13 51135593 51135751 -50737418 - L3 LINE CR1 -458 1119 933 201 224 0 35 chr13 51135894 51135952 -50737217 + T-rich Low_complexity Low_complexity 2 57 0 267 173 0 0 chr13 51136948 51137000 -50736169 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 1812 144 144 11 chr13 51137243 51137617 -50735552 - MSTA LTR MaLR -2 426 3 235 333 28 19 chr13 51137670 51137778 -50735391 - MER5A DNA MER1_type -31 158 50 333 323 71 0 chr13 51137826 51137981 -50735188 - MIR SINE MIR -15 247 82 651 236 22 11 chr13 51138022 51138200 -50734969 - MLT1C LTR MaLR 0 467 288 437 203 268 7 chr13 51138213 51138351 -50734818 - MLT1C LTR MaLR -291 176 3 516 311 132 32 chr13 51138940 51139319 -50733850 - L1ME LINE L1 -1554 4592 4176 350 291 152 13 chr13 51141071 51141222 -50731947 - MER5A DNA MER1_type -2 187 16 329 263 69 51 chr13 51141626 51141801 -50731368 + MLT1J LTR MaLR 306 483 -28 397 310 66 31 chr13 51141878 51142197 -50730972 - L1ME LINE L1 -552 5614 5285 232 280 70 32 chr13 51142260 51142417 -50730752 - L1ME LINE L1 -917 5229 5067 285 39 59 0 chr13 51142812 51142863 -50730306 + (TA)n Simple_repeat Simple_repeat 2 55 0 1100 313 89 25 chr13 51143169 51143718 -50729451 - HERVL LTR ERVL -1051 4603 4020 252 348 53 35 chr13 51144065 51144292 -50728877 - HERVL LTR ERVL -2076 3688 3458 236 278 0 5 chr13 51144417 51144518 -50728651 + MER5A DNA MER1_type 42 189 0 21 71 0 0 chr13 51144725 51144767 -50728402 + AT_rich Low_complexity Low_complexity 1 42 0 1484 179 70 17 chr13 51145228 51145530 -50727639 + MLT1A1 LTR MaLR 4 321 -44 346 200 120 0 chr13 51145530 51145605 -50727564 + MLT1A1 LTR MaLR 282 365 0 496 77 26 0 chr13 51145760 51145838 -50727331 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 338 0 0 0 chr13 51147763 51147807 -50725362 - L1PA2 LINE L1 -1 6154 6111 2189 139 72 27 chr13 51149056 51149566 -50723603 + MLT2A2 LTR ERVL 1 554 0 23 33 0 0 chr13 51150423 51150453 -50722716 + AT_rich Low_complexity Low_complexity 1 30 0 208 293 98 81 chr13 51150902 51151025 -50722144 - MER5A DNA MER1_type -8 181 57 43 29 0 15 chr13 51151090 51151140 -50722029 + AT_rich Low_complexity Low_complexity 1 51 -16 2746 52 6 0 chr13 51151140 51151486 -50721683 - L1PA7 LINE L1 -13 6141 5794 43 29 0 15 chr13 51151486 51151503 -50721666 + AT_rich Low_complexity Low_complexity 51 67 0 2177 74 3 7 chr13 51151531 51151815 -50721354 + MLT2A1 LTR ERVL 1 283 -161 218 208 19 0 chr13 51151925 51151978 -50721191 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 185 180 0 49 chr13 51151996 51152057 -50721112 + (CATA)n Simple_repeat Simple_repeat 4 61 0 429 195 0 0 chr13 51152145 51152232 -50720937 - AluS SINE Alu 0 312 226 1774 326 15 17 chr13 51152793 51153545 -50719624 - HERVI LTR ERV1 -138 7647 6898 206 296 123 0 chr13 51154447 51154528 -50718641 + L3 LINE CR1 1472 1562 -15 2227 47 9 60 chr13 51157326 51157644 -50715525 - AluYa5 SINE Alu -9 302 1 348 253 40 103 chr13 51157891 51158065 -50715104 + MER5B DNA MER1_type 16 178 0 207 162 0 0 chr13 51158326 51158363 -50714806 + CT-rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr13 51158363 51158399 -50714770 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr13 51159940 51159982 -50713187 + AT_rich Low_complexity Low_complexity 1 42 0 1763 112 0 8 chr13 51161182 51161461 -50711708 + AluSx SINE Alu 44 320 0 269 196 0 0 chr13 51161983 51162034 -50711135 - MLT1D LTR MaLR -414 91 41 * 2115 126 42 3 chr13 51162032 51162365 -50710804 - MSTA LTR MaLR -82 346 1 357 98 0 0 chr13 51162387 51162438 -50710731 - MLT2A1 LTR ERVL 0 444 394 207 0 0 0 chr13 51162441 51162464 -50710705 + (TG)n Simple_repeat Simple_repeat 2 24 0 225 143 0 0 chr13 51162464 51162499 -50710670 + MLT2A1 LTR ERVL 395 429 -15 226 122 20 20 chr13 51162501 51162550 -50710619 + (TA)n Simple_repeat Simple_repeat 1 49 0 2399 117 60 30 chr13 51162550 51163013 -50710156 - MLT2A2 LTR ERVL -40 514 1 196 371 35 17 chr13 51163146 51163262 -50709907 + L2 LINE L2 2178 2295 -1019 222 236 79 45 chr13 51163697 51163786 -50709383 + L2 LINE L2 3222 3313 0 2349 87 3 0 chr13 51164469 51164767 -50708402 + AluSp SINE Alu 1 299 -14 23 33 0 0 chr13 51167914 51167944 -50705225 + AT_rich Low_complexity Low_complexity 1 30 0 259 293 47 28 chr13 51167949 51168055 -50705114 + MIR SINE MIR 93 200 -62 48 0 0 0 chr13 51168079 51168127 -50705042 + AT_rich Low_complexity Low_complexity 1 48 0 666 189 73 89 chr13 51168174 51168433 -50704736 - MER2 DNA MER2_type 0 345 91 1340 238 102 12 chr13 51170015 51170436 -50702733 + Charlie4a DNA MER1_type 50 508 0 1381 167 19 142 chr13 51170770 51170940 -50702229 - MER67C LTR ERV1 -232 282 281 2511 45 3 13 chr13 51170940 51171252 -50701917 - AluY SINE Alu -2 309 1 1381 167 19 142 chr13 51171252 51171498 -50701671 - MER67C LTR ERV1 -233 281 6 246 116 0 0 chr13 51171612 51171655 -50701514 + (TG)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chr13 51173184 51173211 -50699958 + (T)n Simple_repeat Simple_repeat 1 27 0 28 71 0 0 chr13 51174881 51174937 -50698232 + AT_rich Low_complexity Low_complexity 1 56 0 1908 91 4 18 chr13 51175211 51175485 -50697684 + AluY SINE Alu 39 308 -3 407 203 0 0 chr13 51175651 51175730 -50697439 - MLT1E3 LTR MaLR 0 624 546 737 221 20 0 chr13 51175731 51175880 -50697289 - MLT1E1 LTR MaLR -499 155 4 298 303 68 31 chr13 51177751 51177913 -50695256 + MIR SINE MIR 79 246 -16 27 49 0 0 chr13 51177918 51177959 -50695210 + AT_rich Low_complexity Low_complexity 1 41 0 319 291 104 26 chr13 51178066 51178296 -50694873 - L1ME4a LINE L1 -104 6017 5770 898 185 38 0 chr13 51178309 51178466 -50694703 - AluJb SINE Alu -30 282 120 293 330 35 0 chr13 51178505 51178678 -50694491 - L1ME4a LINE L1 -2021 5787 5609 191 209 30 134 chr13 51179044 51179111 -50694058 + MIR SINE MIR 90 149 -113 3784 174 62 14 chr13 51179173 51179770 -50693399 + LTR1B LTR ERV1 1 647 -179 2159 84 20 10 chr13 51179770 51180066 -50693103 + AluSg SINE Alu 12 310 0 3784 174 62 14 chr13 51180066 51180256 -50692913 + LTR1B LTR ERV1 647 826 0 563 155 10 10 chr13 51180715 51180812 -50692357 + MER4A LTR ERV1 2 98 -566 1865 138 9 16 chr13 51180812 51181160 -50692009 + MER4A LTR ERV1 261 664 0 2304 83 0 3 chr13 51181423 51181724 -50691445 + AluSc SINE Alu 1 300 -9 396 301 80 25 chr13 51181870 51182195 -50690974 + HAL1 LINE L1 1255 1597 -910 231 358 17 35 chr13 51182301 51182474 -50690695 + REP3 LTR ERV 21 190 -372 2137 108 0 23 chr13 51182820 51183127 -50690042 - AluSg SINE Alu -2 308 9 232 274 0 41 chr13 51183171 51183244 -50689925 - MLT1L LTR MaLR -196 419 350 862 279 38 61 chr13 51184679 51185174 -50687995 - HsTC2 DNA Tc2 -64 1834 1175 3680 141 5 13 chr13 51185260 51185885 -50687284 - L1PA15 LINE L1 -2 6163 5544 6765 205 12 8 chr13 51185884 51187365 -50685804 + L1P LINE L1 2263 3749 -2397 443 248 9 18 chr13 51187380 51187489 -50685680 - HsTC2 DNA Tc2 -1788 110 3 927 199 135 11 chr13 51188016 51188298 -50684871 - MER33 DNA MER1_type -7 317 1 223 48 24 24 chr13 51188707 51188749 -50684420 + (TC)n Simple_repeat Simple_repeat 2 43 0 340 348 191 0 chr13 51189636 51189846 -50683323 - MIR SINE MIR -8 254 5 430 316 77 61 chr13 51190018 51190410 -50682759 + MLT1J LTR MaLR 72 469 -42 1107 181 14 33 chr13 51190410 51190625 -50682544 - AluJo SINE Alu -11 301 91 413 359 61 16 chr13 51192137 51192449 -50680720 + MARNA DNA Mariner 54 379 -207 556 257 62 0 chr13 51194101 51194245 -50678924 - MIR SINE MIR -14 248 96 2410 71 0 3 chr13 51194708 51195016 -50678153 + AluY SINE Alu 1 307 -4 316 277 124 56 chr13 51196044 51196789 -50676380 + L1ME3A LINE L1 2453 3279 -2867 2021 191 84 24 chr13 51196875 51197337 -50675832 + LTR2B LTR ERV1 1 490 0 42069 193 14 8 chr13 51197337 51205069 -50668100 + Harlequin LTR ERV1 1 7810 -3 1514 217 64 37 chr13 51205074 51205280 -50667889 + LTR2 LTR ERV1 1 200 -249 201 74 0 0 chr13 51205280 51205307 -50667862 + (TTCTG)n Simple_repeat Simple_repeat 2 28 0 1514 217 64 37 chr13 51205307 51205537 -50667632 + LTR2 LTR ERV1 200 449 0 231 295 36 60 chr13 51205735 51205901 -50667268 + L1ME3A LINE L1 5120 5281 -865 4521 175 14 5 chr13 51205901 51206671 -50666498 + LTR39 LTR ERV1 7 783 0 744 327 45 7 chr13 51206671 51206967 -50666202 - MLT1I LTR MaLR -39 370 63 425 316 65 25 chr13 51207052 51207375 -50665794 + L1ME3A LINE L1 5364 5699 -471 26 93 0 0 chr13 51207380 51207455 -50665714 + AT_rich Low_complexity Low_complexity 1 75 0 353 353 20 0 chr13 51207518 51207668 -50665501 + L1ME3A LINE L1 5785 5937 -233 1763 102 84 7 chr13 51207764 51208038 -50665131 + AluSx SINE Alu 3 297 -15 208 143 0 0 chr13 51210691 51210726 -50662443 + (A)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr13 51212032 51212063 -50661106 + AT_rich Low_complexity Low_complexity 1 31 0 1794 207 28 0 chr13 51213398 51213750 -50659419 - MLT1A1 LTR MaLR 0 365 4 26 50 0 0 chr13 51214053 51214093 -50659076 + AT_rich Low_complexity Low_complexity 1 40 0 313 179 11 21 chr13 51214378 51214473 -50658696 + GA-rich Low_complexity Low_complexity 2 95 0 319 257 48 29 chr13 51215186 51215291 -50657878 + L1MEd LINE L1 999 1105 -5014 948 226 198 96 chr13 51215306 51216245 -50656924 + MER52A LTR ERV1 3 1755 0 317 297 30 10 chr13 51217692 51217793 -50655376 - L1MC4 LINE L1 -2 8040 7938 6953 62 9 0 chr13 51217794 51219176 -50653993 - L1PA7 LINE L1 -2 6152 4763 207 114 0 0 chr13 51219409 51219444 -50653725 + (ATG)n Simple_repeat Simple_repeat 2 36 0 244 174 17 43 chr13 51220281 51220396 -50652773 + (TATAA)n Simple_repeat Simple_repeat 2 113 0 2547 175 15 0 chr13 51220412 51220868 -50652301 + MLT1C LTR MaLR 1 463 -4 253 289 26 13 chr13 51221131 51221207 -50651962 - L3 LINE CR1 -19 1558 1482 23 0 0 0 chr13 51222127 51222150 -50651019 + AT_rich Low_complexity Low_complexity 1 23 0 217 297 0 14 chr13 51223473 51223547 -50649622 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 298 282 0 7 chr13 51223766 51223883 -50649286 + MIR SINE MIR 6 198 -64 231 88 0 0 chr13 51224111 51224145 -50649024 + (TC)n Simple_repeat Simple_repeat 2 35 0 201 158 37 0 chr13 51224144 51224226 -50648943 + (TA)n Simple_repeat Simple_repeat 2 86 0 * 316 369 74 0 chr13 51224384 51224533 -50648636 - L2 LINE L2 -470 2844 2685 1997 155 35 16 chr13 51225158 51225526 -50647643 - THE1C LTR MaLR 0 375 1 26 50 0 0 chr13 51225698 51225738 -50647431 + AT_rich Low_complexity Low_complexity 1 40 0 1512 187 46 23 chr13 51225929 51226234 -50646935 - AluJo SINE Alu 0 312 1 25 0 0 0 chr13 51226346 51226371 -50646798 + AT_rich Low_complexity Low_complexity 1 25 0 2332 156 10 3 chr13 51226801 51228176 -50644993 - L1MA1 LINE L1 0 6302 4835 1994 139 30 0 chr13 51228193 51228494 -50644675 - AluSx SINE Alu 0 312 3 3176 134 52 54 chr13 51228888 51229302 -50643867 + MER4B LTR ERV1 1 415 -195 2254 82 3 13 chr13 51229302 51229606 -50643563 - AluY SINE Alu -10 301 1 3176 134 52 54 chr13 51229606 51229802 -50643367 + MER4B LTR ERV1 415 610 0 3044 251 164 34 chr13 51230224 51231377 -50641792 - L1MC4 LINE L1 0 8042 6650 213 94 0 0 chr13 51231377 51231409 -50641760 + (TA)n Simple_repeat Simple_repeat 1 32 0 3044 251 164 34 chr13 51231409 51231739 -50641430 - L1MC4 LINE L1 -1392 6650 6365 1055 261 33 11 chr13 51231857 51232221 -50640948 - L1ME2 LINE L1 -221 5943 5572 1924 272 139 45 chr13 51232234 51233382 -50639787 - L1ME2 LINE L1 -908 5238 3900 697 153 7 58 chr13 51233382 51233519 -50639650 - FLAM_C SINE Alu -3 130 1 1924 272 139 45 chr13 51233519 51233946 -50639223 - L1ME2 LINE L1 -2246 3900 3515 2022 81 37 0 chr13 51234392 51234700 -50638469 - AluY SINE Alu 0 318 1 28 0 0 0 chr13 51234815 51234843 -50638326 + AT_rich Low_complexity Low_complexity 1 28 0 1660 157 106 15 chr13 51235116 51235447 -50637722 + MER46B DNA MER2_type 1 236 0 252 86 0 0 chr13 51235629 51235664 -50637505 + (TTATA)n Simple_repeat Simple_repeat 3 37 0 285 0 0 0 chr13 51239438 51239471 -50633698 + MER58A DNA MER1_type 46 78 -29 420 296 62 6 chr13 51240616 51240778 -50632391 - MIR SINE MIR 0 262 92 2234 90 0 0 chr13 51241665 51241976 -50631193 + AluSg SINE Alu 1 311 0 25 31 0 0 chr13 51242032 51242064 -50631105 + AT_rich Low_complexity Low_complexity 1 32 0 1865 153 26 3 chr13 51242064 51242411 -50630758 - L1MA4 LINE L1 -9 6291 5937 493 330 8 42 chr13 51242431 51242670 -50630499 + L2 LINE L2 2579 2809 -505 1921 248 18 90 chr13 51244873 51244939 -50628230 - MLT1E3 LTR MaLR -8 618 549 1787 109 42 42 chr13 51244939 51245222 -50627947 + AluSx SINE Alu 8 290 -22 1921 248 18 90 chr13 51245222 51245815 -50627354 - MLT1E3 LTR MaLR -77 549 2 23 33 0 0 chr13 51245976 51246006 -50627163 + AT_rich Low_complexity Low_complexity 1 30 0 282 353 112 16 chr13 51246117 51246366 -50626803 - L2 LINE L2 -33 3280 3008 306 0 0 0 chr13 51246654 51246688 -50626481 + (CA)n Simple_repeat Simple_repeat 1 34 0 851 281 30 4 chr13 51246688 51246919 -50626250 - MIR SINE MIR -24 238 2 1799 253 72 36 chr13 51247525 51247882 -50625287 + L1ME2 LINE L1 4143 4486 -1678 1685 223 30 15 chr13 51247882 51248286 -50624883 - MLT2D LTR ERVL -4 410 1 1799 253 72 36 chr13 51248286 51248725 -50624444 + L1ME2 LINE L1 4486 4908 -1256 2187 125 0 0 chr13 51248725 51249030 -50624139 - AluSx SINE Alu -7 305 1 1799 253 72 36 chr13 51249030 51249972 -50623197 + L1ME2 LINE L1 4908 5946 -218 216 0 0 0 chr13 51250022 51250046 -50623123 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6444 69 5 1 chr13 51250080 51250924 -50622245 - L1PA8A LINE L1 -31 6100 5254 355 241 15 45 chr13 51250930 51251063 -50622106 + L1ME2 LINE L1 6036 6164 0 35 18 0 35 chr13 51251562 51251591 -50621578 + AT_rich Low_complexity Low_complexity 1 29 -26 1710 155 40 0 chr13 51251591 51251869 -50621300 + AluSx SINE Alu 1 289 -23 35 18 0 35 chr13 51251869 51251896 -50621273 + AT_rich Low_complexity Low_complexity 29 55 0 26626 97 6 19 chr13 51252169 51256080 -50617089 + L1PA6 LINE L1 11 3873 -2273 8081 59 6 0 chr13 51256080 51257883 -50615286 + L1PA6 LINE L1 4339 6147 -7 31 58 0 0 chr13 51258077 51258129 -50615040 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr13 51259063 51259086 -50614083 + AT_rich Low_complexity Low_complexity 1 23 0 630 100 30 0 chr13 51259726 51259826 -50613343 + L1MC1 LINE L1 6231 6333 0 1965 129 13 3 chr13 51260024 51260334 -50612835 - AluSq SINE Alu 0 313 1 251 213 0 0 chr13 51260457 51260504 -50612665 - MIR SINE MIR 0 262 216 258 222 37 25 chr13 51260602 51260683 -50612486 - MIR SINE MIR 0 262 181 225 330 89 0 chr13 51260704 51260816 -50612353 - MIR SINE MIR -30 232 111 227 287 79 10 chr13 51261437 51261538 -50611631 + MIR SINE MIR 84 191 -71 1219 219 0 0 chr13 51262015 51262234 -50610935 - MER58A DNA MER1_type -1 223 5 22 0 0 0 chr13 51263006 51263028 -50610141 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 51264778 51264807 -50608362 + AT_rich Low_complexity Low_complexity 1 29 0 5052 171 27 16 chr13 51264815 51266359 -50606810 - L1MA7 LINE L1 -2 6493 4930 444 187 11 0 chr13 51266365 51266456 -50606713 - L1MA7 LINE L1 -3726 2624 2533 2279 206 27 69 chr13 51266509 51267134 -50606035 - LTR9 LTR ERV1 -13 599 1 517 384 34 15 chr13 51267140 51267408 -50605761 - L1MA7 LINE L1 -5115 1166 894 13989 218 31 9 chr13 51267817 51271697 -50601472 - L1 LINE L1 -2324 4524 3 180 111 0 0 chr13 51272630 51272657 -50600512 + (ATG)n Simple_repeat Simple_repeat 1 27 0 216 0 0 0 chr13 51274212 51274236 -50598933 + (A)n Simple_repeat Simple_repeat 1 24 0 203 378 39 26 chr13 51275556 51275712 -50597457 + L3 LINE CR1 1338 1495 -82 411 38 0 0 chr13 51276066 51276119 -50597050 + (TA)n Simple_repeat Simple_repeat 2 54 0 1732 157 10 7 chr13 51276119 51276412 -50596757 - AluSx SINE Alu -16 296 3 23 33 0 0 chr13 51276665 51276695 -50596474 + AT_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chr13 51276706 51276772 -50596397 + AT_rich Low_complexity Low_complexity 1 66 0 475 217 0 0 chr13 51276905 51276997 -50596172 - FLAM_A SINE Alu -15 127 36 225 297 81 45 chr13 51277059 51277170 -50595999 + MIR SINE MIR 85 199 -63 286 267 83 91 chr13 51277476 51277851 -50595318 - Charlie7 DNA MER1_type -286 2326 1955 6494 48 2 1 chr13 51277851 51278651 -50594518 - L1PA5 LINE L1 -6 6148 5348 790 278 103 49 chr13 51278717 51279271 -50593898 - Charlie7 DNA MER1_type -687 1925 1342 781 302 129 24 chr13 51279266 51279802 -50593367 - Charlie7 DNA MER1_type -1973 639 48 * 22 0 0 0 chr13 51282012 51282034 -50591135 + AT_rich Low_complexity Low_complexity 1 22 0 235 355 61 12 chr13 51282231 51282377 -50590792 - MIR3 SINE MIR -65 143 3 21 0 0 0 chr13 51283089 51283110 -50590059 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 51285159 51285180 -50587989 + AT_rich Low_complexity Low_complexity 1 21 0 368 264 97 89 chr13 51285202 51285731 -50587438 + L1ME LINE L1 4904 5440 -724 21 0 0 0 chr13 51285900 51285921 -50587248 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 51285927 51285948 -50587221 + AT_rich Low_complexity Low_complexity 1 21 0 260 339 33 8 chr13 51287741 51287862 -50585307 + L2 LINE L2 1870 1993 -1321 312 309 119 16 chr13 51288052 51288246 -50584923 + L1ME LINE L1 728 941 -5589 255 61 0 0 chr13 51288274 51288307 -50584862 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1291 83 42 0 chr13 51288308 51288501 -50584668 - L1PA11 LINE L1 -10 6164 5964 240 290 53 8 chr13 51288689 51288820 -50584349 + L1ME LINE L1 999 1135 -5395 861 282 12 8 chr13 51288824 51289072 -50584097 - L1MC4a LINE L1 -1350 6458 6210 883 247 107 95 chr13 51289074 51290053 -50583116 + L1ME LINE L1 1105 2075 -4465 1467 293 51 12 chr13 51290096 51290768 -50582401 + L1M4 LINE L1 4187 4884 -1262 543 302 47 47 chr13 51290807 51291105 -50582064 + ERVL LTR ERVL 4365 4662 -1102 874 120 24 54 chr13 51291106 51291273 -50581896 + AluJb SINE Alu 64 225 -87 320 325 57 16 chr13 51291288 51291411 -50581758 + ERVL LTR ERVL 4617 4744 -910 1063 299 103 23 chr13 51291548 51292073 -50581096 + ERVL LTR ERVL 5009 5575 -189 27 0 0 0 chr13 51293269 51293296 -50579873 + AT_rich Low_complexity Low_complexity 1 27 0 1876 114 0 76 chr13 51293363 51293680 -50579489 + AluSx SINE Alu 1 293 -19 252 0 0 0 chr13 51293683 51293711 -50579458 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 419 350 32 36 chr13 51294454 51294674 -50578495 + MIR SINE MIR 27 245 -17 253 315 86 35 chr13 51294969 51295226 -50577943 - L1ME4a LINE L1 -202 5919 5650 2586 29 0 13 chr13 51295373 51295685 -50577484 - AluY SINE Alu -3 308 1 1663 183 10 0 chr13 51295685 51295975 -50577194 - AluJb SINE Alu -19 293 1 380 316 53 32 chr13 51296478 51296665 -50576504 + MIR SINE MIR 1 191 -71 258 56 0 0 chr13 51297122 51297158 -50576011 + (T)n Simple_repeat Simple_repeat 1 36 0 208 335 16 109 chr13 51297500 51297748 -50575421 - L2 LINE L2 -93 3179 2955 2577 212 10 2 chr13 51297956 51298451 -50574718 + Tigger1 DNA MER2_type 3 501 -1917 812 152 7 7 chr13 51298442 51298580 -50574589 + Tigger1 DNA MER2_type 1948 2085 -333 * 337 123 0 62 chr13 51298934 51298999 -50574170 + Tigger1 DNA MER2_type 2078 2138 -280 828 284 122 37 chr13 51299100 51299585 -50573584 - L1ME3A LINE L1 -44 6126 5601 22 0 0 0 chr13 51300394 51300416 -50572753 + AT_rich Low_complexity Low_complexity 1 22 0 334 343 40 15 chr13 51302223 51302421 -50570748 + MIR SINE MIR 36 238 -24 1736 227 127 11 chr13 51302469 51302918 -50570251 - MLT1D LTR MaLR -4 501 1 208 374 65 8 chr13 51304614 51304737 -50568432 - L2 LINE L2 -2 3270 3141 221 219 49 24 chr13 51304893 51304975 -50568194 + CT-rich Low_complexity Low_complexity 1 84 0 230 321 127 62 chr13 51305020 51305406 -50567763 - L2 LINE L2 -62 3251 2841 1352 134 17 13 chr13 51306050 51306327 -50566842 + THE1A LTR MaLR 1 364 0 10355 97 43 20 chr13 51306327 51307871 -50565298 + THE1A-int LTR MaLR 1 1580 0 1891 154 17 34 chr13 51307875 51308232 -50564937 + THE1A LTR MaLR 5 355 0 4194 216 44 8 chr13 51309045 51310001 -50563168 + Tigger6a DNA MER2_type 94 1083 0 371 331 69 11 chr13 51310001 51310176 -50562993 + L2 LINE L2 2536 2720 -594 4126 306 132 46 chr13 51310411 51313236 -50559933 + L2 LINE L2 4 3067 -246 341 366 112 17 chr13 51313301 51313810 -50559359 + L2 LINE L2 2734 3297 -16 310 282 51 0 chr13 51313973 51314090 -50559079 - MER94 DNA DNA -9 125 3 198 164 178 41 chr13 51314119 51314192 -50558977 + MIR SINE MIR 106 188 -74 262 212 12 12 chr13 51314214 51314299 -50558870 + (TATATG)n Simple_repeat Simple_repeat 6 90 0 2031 160 40 0 chr13 51314667 51315017 -50558152 - THE1B LTR MaLR 0 364 1 36 0 0 0 chr13 51315143 51315179 -50557990 + AT_rich Low_complexity Low_complexity 1 36 0 2137 156 89 3 chr13 51316694 51317085 -50556084 + MSTB1 LTR MaLR 8 432 0 6926 236 31 8 chr13 51317097 51318698 -50554471 + MSTB1-int LTR MaLR 14 1651 0 1510 147 66 35 chr13 51318698 51318984 -50554185 + MSTB1 LTR MaLR 1 295 -137 22 0 0 0 chr13 51319115 51319137 -50554032 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 51319736 51319764 -50553405 + AT_rich Low_complexity Low_complexity 1 28 0 824 137 8 0 chr13 51320753 51320877 -50552292 + AluJb SINE Alu 1 125 -187 23 0 0 0 chr13 51321605 51321628 -50551541 + AT_rich Low_complexity Low_complexity 1 23 0 418 204 10 20 chr13 51322306 51322404 -50550765 + LTR52 LTR ERVL 1 97 -324 2059 154 6 16 chr13 51322404 51322768 -50550401 + L1PB4 LINE L1 5706 6065 -91 1623 157 116 36 chr13 51322768 51323105 -50550064 + THE1B LTR MaLR 1 364 0 4906 108 44 34 chr13 51323106 51323610 -50549559 + THE1B-int LTR MaLR 2 518 -1062 4533 45 2 2 chr13 51323610 51324170 -50548999 - L1PA4 LINE L1 -3 6152 5593 4906 108 44 34 chr13 51324170 51324432 -50548737 + THE1B-int LTR MaLR 518 776 -804 235 402 0 0 chr13 51325130 51325227 -50547942 - MIR SINE MIR -68 140 44 1615 176 18 4 chr13 51326045 51326324 -50546845 + AluJb SINE Alu 9 291 -21 2018 148 0 0 chr13 51327922 51328219 -50544950 + AluSx SINE Alu 1 297 -15 1319 294 43 24 chr13 51328647 51329199 -50543970 + L1MCb LINE L1 3 565 -5480 3619 256 105 32 chr13 51329311 51331962 -50541207 + L1MCb LINE L1 1248 4196 -2368 742 275 106 4 chr13 51332135 51332584 -50540585 + HERVL40 LTR ERVL 3507 4054 -1476 327 266 62 72 chr13 51332613 51332800 -50540369 + L1MCb LINE L1 4886 5073 -1491 1993 151 0 0 chr13 51332800 51333092 -50540077 + AluSx SINE Alu 1 292 -20 327 266 62 72 chr13 51333092 51333291 -50539878 + L1MCb LINE L1 5073 5268 -1296 1643 198 0 3 chr13 51333543 51333831 -50539338 + AluJo SINE Alu 1 287 -25 1990 132 0 0 chr13 51333893 51334174 -50538995 + AluSx SINE Alu 1 281 -31 2541 68 0 0 chr13 51334323 51334634 -50538535 + AluY SINE Alu 1 311 0 21 0 0 0 chr13 51334957 51334978 -50538191 + AT_rich Low_complexity Low_complexity 1 21 0 239 70 0 23 chr13 51389249 51389292 -50483877 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 2246 105 0 0 chr13 51390322 51390628 -50482541 - AluSx SINE Alu -5 307 2 842 283 145 21 chr13 51390798 51391308 -50481861 + MLT1F1 LTR MaLR 1 593 0 991 283 13 21 chr13 51391310 51391809 -50481360 + MLT1F1-int LTR MaLR 3 612 -759 514 266 33 160 chr13 51392045 51392590 -50480579 + MLT1F1-int LTR MaLR 692 1167 -204 710 427 65 49 chr13 51392932 51393459 -50479710 + MLT1F LTR MaLR 1 535 -7 29 47 0 0 chr13 51393489 51393532 -50479637 + AT_rich Low_complexity Low_complexity 1 43 0 1791 181 2 94 chr13 51395393 51395796 -50477373 + MSTB1 LTR MaLR 3 368 -64 6815 234 52 8 chr13 51395842 51397412 -50475757 + MSTB1-int LTR MaLR 1 1639 -12 2229 166 19 28 chr13 51397412 51397845 -50475324 + MSTB1 LTR MaLR 1 429 -3 22 35 0 0 chr13 51398176 51398205 -50474964 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr13 51398700 51398723 -50474446 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 498 33 0 0 chr13 51400502 51400562 -50472607 + (CA)n Simple_repeat Simple_repeat 2 61 0 2558 183 20 22 chr13 51401708 51402293 -50470876 - LTR60 LTR ERV1 -2 584 1 458 109 297 0 chr13 51403834 51403935 -50469234 - L1MA9 LINE L1 -2 6310 6180 741 224 10 51 chr13 51404819 51405015 -50468154 - MER4C LTR ERV1 0 465 278 340 200 96 42 chr13 51405023 51405173 -50467996 - MER4C LTR ERV1 -201 264 178 1225 148 49 88 chr13 51405174 51405479 -50467690 - MER4A LTR ERV1 -367 297 5 285 372 62 0 chr13 51405480 51405609 -50467560 - L3 LINE CR1 -419 1158 1022 549 306 46 42 chr13 51405624 51405931 -50467238 - MLT1H LTR MaLR -15 534 227 602 227 67 49 chr13 51405938 51406230 -50466939 + L1MA9 LINE L1 6011 6312 0 317 257 18 46 chr13 51406502 51406611 -50466558 + MIR SINE MIR 147 252 -10 338 134 15 0 chr13 51407329 51407396 -50465773 + T-rich Low_complexity Low_complexity 2 69 0 25 0 0 0 chr13 51407554 51407579 -50465590 + AT_rich Low_complexity Low_complexity 1 25 0 486 0 0 0 chr13 51407636 51407690 -50465479 + (TA)n Simple_repeat Simple_repeat 1 54 0 1098 240 101 19 chr13 51407690 51408007 -50465162 + MER2 DNA MER2_type 3 345 0 4154 188 36 25 chr13 51408007 51408917 -50464252 - L1MA9 LINE L1 -83 6229 5310 212 143 24 0 chr13 51408919 51408961 -50464208 + (TA)n Simple_repeat Simple_repeat 1 43 0 396 0 0 0 chr13 51408973 51409030 -50464139 + (TA)n Simple_repeat Simple_repeat 1 101 0 396 0 0 0 chr13 51409030 51409074 -50464095 + (TA)n Simple_repeat Simple_repeat 1 44 0 336 245 106 86 chr13 51409275 51409420 -50463749 - L1MEd LINE L1 -5077 1042 889 1994 119 10 3 chr13 51409420 51409714 -50463455 - AluY SINE Alu -15 296 1 336 245 106 86 chr13 51409714 51409813 -50463356 - L1MEd LINE L1 -5230 889 793 323 168 19 19 chr13 51412081 51412188 -50460981 + (TA)n Simple_repeat Simple_repeat 1 107 0 24 0 0 0 chr13 51412259 51412283 -50460886 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr13 51412825 51412857 -50460312 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 51413261 51413284 -50459885 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 51413652 51413674 -50459495 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 51413749 51413770 -50459399 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr13 51414963 51415010 -50458159 + (CAG)n Simple_repeat Simple_repeat 2 48 0 390 347 46 53 chr13 51416002 51416713 -50456456 + ERVL LTR ERVL 829 1534 -4230 252 0 0 0 chr13 51418544 51418572 -50454597 + (TGG)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr13 51418880 51418908 -50454261 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 51419808 51419829 -50453340 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr13 51422270 51422307 -50450862 + (TA)n Simple_repeat Simple_repeat 2 38 0 206 174 0 22 chr13 51422309 51422355 -50450814 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr13 51423193 51423214 -50449955 + AT_rich Low_complexity Low_complexity 1 21 0 183 312 64 28 chr13 51423334 51423409 -50449760 + MIR SINE MIR 72 154 -108 1365 188 38 20 chr13 51423409 51423702 -50449467 + AluJo SINE Alu 1 298 -14 183 312 64 28 chr13 51423702 51423735 -50449434 + MIR SINE MIR 154 184 -78 1812 170 3 0 chr13 51424526 51424820 -50448349 - AluJb SINE Alu -17 295 1 231 36 0 0 chr13 51424896 51424924 -50448245 + (TA)n Simple_repeat Simple_repeat 2 29 0 746 230 52 68 chr13 51426145 51426397 -50446772 + MER67C LTR ERV1 10 257 -453 1463 237 51 20 chr13 51426399 51426903 -50446266 + LTR28 LTR ERV1 1 1231 -137 * 2522 173 9 7 chr13 51426900 51427356 -50445813 + MER67C LTR ERV1 254 710 0 1239 80 0 18 chr13 51427865 51428028 -50445141 - AluY SINE Alu -19 292 133 2082 61 7 11 chr13 51428028 51428305 -50444864 - AluY SINE Alu 0 311 36 13258 155 28 12 chr13 51428353 51430698 -50442471 + Tigger1 DNA MER2_type 1 2382 -36 23 33 0 0 chr13 51430941 51430971 -50442198 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 51431159 51431188 -50441981 + AT_rich Low_complexity Low_complexity 1 29 0 290 274 79 74 chr13 51431192 51431611 -50441558 + L1M4 LINE L1 4507 4927 -1219 247 344 47 21 chr13 51432406 51432598 -50440571 - L2 LINE L2 -985 2329 2133 5376 168 57 8 chr13 51432804 51434564 -50438605 - L1PBa LINE L1 -2727 4135 2288 3686 88 6 0 chr13 51434552 51435077 -50438092 + L1P5 LINE L1 5264 5791 -360 * 216 200 0 0 chr13 51435084 51435129 -50438040 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr13 51436167 51436189 -50436980 + AT_rich Low_complexity Low_complexity 1 22 0 4069 252 44 26 chr13 51436464 51438253 -50434916 + L1M1 LINE L1 14 2513 -5052 607 218 39 0 chr13 51438261 51438417 -50434752 + L1M1 LINE L1 2985 3146 -4419 2750 179 61 31 chr13 51439345 51440064 -50433105 + LTR1 LTR ERV1 12 785 0 23 33 0 0 chr13 51440441 51440471 -50432698 + AT_rich Low_complexity Low_complexity 1 30 0 260 186 68 0 chr13 51442185 51442244 -50430925 - MER92C LTR ERV1 0 554 492 454 199 0 135 chr13 51442361 51442502 -50430667 - MER92B LTR ERV1 -510 126 5 1066 224 144 93 chr13 51443093 51443928 -50429241 + L1MCa LINE L1 1116 1992 -4434 2770 198 30 2 chr13 51444026 51444598 -50428571 + L1MC3 LINE L1 7139 7726 -59 42 57 0 0 chr13 51445212 51445282 -50427887 + AT_rich Low_complexity Low_complexity 1 70 0 336 329 57 14 chr13 51445386 51445526 -50427643 + MIR SINE MIR 38 183 -79 242 216 20 0 chr13 51446061 51446112 -50427057 + MLT1K LTR MaLR 158 209 -379 1972 217 30 13 chr13 51446701 51447176 -50425993 + MLT1-int LTR MaLR 197 679 -692 2099 101 0 39 chr13 51447302 51447609 -50425560 - AluSg SINE Alu -11 299 5 531 250 66 35 chr13 51447618 51447846 -50425323 - L1ME LINE L1 -609 5555 5321 721 221 54 36 chr13 51448459 51448737 -50424432 + LTR38B LTR ERV1 1 339 -271 1318 300 24 4 chr13 51448738 51449205 -50423964 - L1PA12 LINE L1 -4923 2658 2183 227 378 0 0 chr13 51449441 51449539 -50423630 - L1PA12 LINE L1 -5401 2180 2083 1782 244 66 19 chr13 51451267 51451860 -50421309 + L1MCb LINE L1 570 1190 -4855 1444 115 0 0 chr13 51451860 51452051 -50421118 + AluSx SINE Alu 1 191 -121 523 319 47 21 chr13 51452765 51453000 -50420169 - MIR SINE MIR 0 262 22 318 317 85 60 chr13 51453742 51454061 -50419108 + L2 LINE L2 1688 2014 -1300 463 180 40 10 chr13 51454635 51454735 -50418434 + MER67D LTR ERV1 1 103 -411 1088 291 51 19 chr13 51454859 51455429 -50417740 + L1MC5 LINE L1 7003 7590 -371 23 54 0 0 chr13 51455431 51455468 -50417701 + AT_rich Low_complexity Low_complexity 1 37 0 366 271 106 18 chr13 51455507 51455677 -50417492 + L1MC4 LINE L1 7717 7901 -141 1427 192 23 89 chr13 51456049 51456476 -50416693 + L1MA9 LINE L1 5883 6281 -31 24 53 0 0 chr13 51456476 51456514 -50416655 + AT_rich Low_complexity Low_complexity 1 38 0 25 83 0 0 chr13 51457285 51457345 -50415824 + AT_rich Low_complexity Low_complexity 1 60 0 2325 167 54 58 chr13 51458485 51459001 -50414168 + LTR9 LTR ERV1 1 514 -98 240 30 0 0 chr13 51459742 51459775 -50413394 - Alu SINE Alu -8 294 262 561 270 54 0 chr13 51460463 51460685 -50412484 - L1ME1 LINE L1 -210 5956 5723 322 296 111 50 chr13 51460704 51461163 -50412006 + L1M4 LINE L1 3385 3871 -2275 286 295 67 47 chr13 51461870 51462063 -50411106 - LTR33 LTR ERVL -67 454 258 23 33 0 0 chr13 51462355 51462385 -50410784 + AT_rich Low_complexity Low_complexity 1 30 0 2102 122 17 0 chr13 51462405 51462700 -50410469 + AluSx SINE Alu 1 300 -12 2982 142 46 32 chr13 51462705 51462865 -50410304 - L1MA4 LINE L1 -24 6276 6120 1965 108 0 32 chr13 51462865 51463144 -50410025 + AluSc SINE Alu 1 270 -39 1383 46 0 0 chr13 51463144 51463319 -50409850 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 2982 142 46 32 chr13 51463319 51463727 -50409442 - L1MA4 LINE L1 -179 6121 5699 23 54 0 0 chr13 51465623 51465660 -50407509 + AT_rich Low_complexity Low_complexity 1 37 0 953 277 99 53 chr13 51466747 51467314 -50405855 - MLT1E LTR MaLR 0 593 1 270 317 30 0 chr13 51468223 51468324 -50404845 + MIR SINE MIR 48 151 -111 2361 120 0 6 chr13 51469243 51469602 -50403567 + L1PB1 LINE L1 5794 6150 -1 184 154 0 77 chr13 51469874 51469913 -50403256 - L2 LINE L2 -11 3302 3267 * 473 286 54 0 chr13 51469884 51470031 -50403138 - MIR SINE MIR -12 250 96 460 253 0 0 chr13 51470264 51470347 -50402822 - MER5A DNA MER1_type -83 106 24 298 273 0 11 chr13 51470758 51470846 -50402323 - MIR SINE MIR -1 261 175 679 223 100 26 chr13 51470999 51471228 -50401941 + LTR37B LTR ERV1 223 468 0 1411 256 72 32 chr13 51471308 51471807 -50401362 - LTR40a LTR ERVL 0 519 1 42740 34 21 3 chr13 51472582 51478622 -50394547 - L1PA2 LINE L1 0 6155 4 22 80 0 0 chr13 51478953 51479003 -50394166 + AT_rich Low_complexity Low_complexity 1 50 0 1938 210 61 15 chr13 51479665 51480123 -50393046 - MLT1D LTR MaLR 0 505 27 995 248 70 59 chr13 51480204 51480275 -50392894 - MLT1E LTR MaLR 0 593 524 2347 62 3 0 chr13 51480275 51480563 -50392606 + AluY SINE Alu 9 297 -14 995 248 70 59 chr13 51480563 51480869 -50392300 - MLT1E LTR MaLR -69 524 210 660 283 15 7 chr13 51481065 51481337 -50391832 - L1MEc LINE L1 -5305 1091 818 606 323 95 9 chr13 51481461 51481786 -50391383 - L1MEc LINE L1 -5978 418 66 291 73 0 0 chr13 51481800 51481841 -50391328 - MLT1E2 LTR MaLR 0 626 586 292 274 83 85 chr13 51481869 51482445 -50390724 + MER31-int LTR ERV1 3492 4066 -870 37 0 0 0 chr13 51482872 51482909 -50390260 + AT_rich Low_complexity Low_complexity 1 37 0 743 86 0 0 chr13 51482912 51483017 -50390152 - L1PB1 LINE L1 -4 6147 6043 631 228 38 42 chr13 51483017 51483254 -50389915 + LTR37B LTR ERV1 231 466 -2 240 399 37 0 chr13 51483256 51483419 -50389750 - MIR SINE MIR -89 173 5 2555 112 3 0 chr13 51483423 51483770 -50389399 - THE1A LTR MaLR -2 353 6 11064 116 4 1 chr13 51483775 51485351 -50387818 - THE1A-int LTR MaLR 0 1580 1 2747 79 3 0 chr13 51485351 51485705 -50387464 - THE1A LTR MaLR 0 355 1 21 36 0 0 chr13 51486001 51486029 -50387140 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 51488670 51488695 -50384474 + AT_rich Low_complexity Low_complexity 1 25 0 4574 209 44 5 chr13 51488749 51489639 -50383530 + L1PB1 LINE L1 19 943 -6622 4828 77 42 6 chr13 51489639 51489790 -50383379 + L1PB1 LINE L1 2709 2853 -4713 2404 77 0 3 chr13 51489790 51490088 -50383081 + AluY SINE Alu 1 297 -14 4828 77 42 6 chr13 51490088 51490665 -50382504 + L1PB1 LINE L1 2853 3464 -4102 11331 188 29 54 chr13 51490672 51492223 -50380946 + L1PB1 LINE L1 3529 5117 -2453 195 69 0 0 chr13 51492223 51492252 -50380917 + (CAA)n Simple_repeat Simple_repeat 2 30 0 11331 188 29 54 chr13 51492252 51492948 -50380221 + L1PB1 LINE L1 5117 5829 -1741 234 0 0 0 chr13 51492948 51492974 -50380195 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 11331 188 29 54 chr13 51492974 51494537 -50378632 + L1PB1 LINE L1 5829 7237 -333 387 41 0 0 chr13 51494537 51494586 -50378583 + (CA)n Simple_repeat Simple_repeat 2 50 0 11331 188 29 54 chr13 51494586 51494912 -50378257 + L1PB1 LINE L1 7237 7570 0 478 262 21 7 chr13 51494935 51495076 -50378093 + Charlie2 DNA MER1_type 2130 2272 -590 22 0 0 0 chr13 51495076 51495098 -50378071 + AT_rich Low_complexity Low_complexity 1 22 0 8634 168 19 11 chr13 51495108 51497897 -50375272 + L1MA2 LINE L1 3492 6304 0 460 324 40 57 chr13 51498004 51498405 -50374764 + L1ME4a LINE L1 5560 5953 -168 907 146 0 0 chr13 51498531 51498668 -50374501 - L1PA10 LINE L1 -246 5928 5792 1406 104 32 23 chr13 51498668 51498887 -50374282 + L1PA10 LINE L1 5929 6150 -18 40 37 0 0 chr13 51498887 51498941 -50374228 + AT_rich Low_complexity Low_complexity 1 54 0 356 233 0 27 chr13 51499378 51499479 -50373690 + MER92B LTR ERV1 1 582 -54 2269 148 6 6 chr13 51499854 51500218 -50372951 + THE1B LTR MaLR 1 364 0 231 250 24 0 chr13 51500416 51500500 -50372669 - L1MC4 LINE L1 -1339 6703 6618 231 196 0 0 chr13 51500720 51500766 -50372403 + MIR SINE MIR 107 152 -110 192 222 0 0 chr13 51501412 51501448 -50371721 - L2 LINE L2 -978 2336 2301 353 274 0 0 chr13 51501712 51501796 -50371373 + MER89 LTR ERV1 1 84 -475 * 1347 211 80 36 chr13 51501774 51502111 -50371058 + MER89 LTR ERV1 197 548 -11 331 273 81 41 chr13 51502178 51502350 -50370819 + MER90 LTR ERV1 436 614 0 430 309 70 41 chr13 51502441 51502684 -50370485 - MIR SINE MIR -5 257 8 239 327 40 40 chr13 51502677 51502827 -50370342 - L2 LINE L2 -1344 1970 1821 * 35 0 0 0 chr13 51503832 51503867 -50369302 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr13 51503903 51503934 -50369235 + (TG)n Simple_repeat Simple_repeat 2 32 0 240 111 0 0 chr13 51505221 51505266 -50367903 + (ATG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr13 51505727 51505748 -50367421 + AT_rich Low_complexity Low_complexity 1 21 0 711 237 12 90 chr13 51506974 51507219 -50365950 - L1MA9 LINE L1 -6 6285 6060 * 927 186 19 178 chr13 51507215 51507736 -50365433 + L1MA9 LINE L1 5635 6005 -178 2338 201 33 74 chr13 51508917 51509555 -50363614 - LTR9 LTR ERV1 0 612 1 1877 205 74 42 chr13 51509788 51510286 -50362883 - MER67D LTR ERV1 0 514 1 475 312 89 5 chr13 51510391 51510593 -50362576 - MIR SINE MIR -13 249 31 213 348 72 50 chr13 51511281 51511502 -50361667 + L3 LINE CR1 1233 1458 -119 255 376 82 29 chr13 51511752 51512095 -50361074 + L3 LINE CR1 1194 1554 -23 180 241 56 0 chr13 51512064 51512118 -50361051 + MIR3 SINE MIR 150 206 -2 * 28 71 0 0 chr13 51512640 51512696 -50360473 + AT_rich Low_complexity Low_complexity 1 56 0 229 356 48 0 chr13 51513093 51513197 -50359972 - MIR SINE MIR 0 262 154 223 381 16 8 chr13 51513370 51513496 -50359673 - L2 LINE L2 -479 2835 2709 297 318 22 119 chr13 51513497 51513909 -50359260 - L2 LINE L2 -137 3176 2805 204 216 0 0 chr13 51514769 51514820 -50358349 + (CA)n Simple_repeat Simple_repeat 2 52 0 1619 207 28 33 chr13 51514910 51515302 -50357867 + MLT1B LTR MaLR 1 390 0 21 57 0 0 chr13 51515436 51515471 -50357698 + AT_rich Low_complexity Low_complexity 1 35 0 845 94 0 0 chr13 51515471 51515588 -50357581 - L1MA1 LINE L1 -8 6294 6178 2663 104 5 8 chr13 51515588 51515982 -50357187 - L1MA2 LINE L1 -259 7464 7072 311 64 0 21 chr13 51515995 51516042 -50357127 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 789 180 0 0 chr13 51516071 51516210 -50356959 - FLAM_C SINE Alu -2 141 3 8185 169 59 13 chr13 51516210 51518254 -50354915 - L1MA2 LINE L1 -635 7086 4934 624 132 11 0 chr13 51518254 51518365 -50354804 - AluSg/x SINE Alu 0 298 187 4894 159 27 15 chr13 51518381 51519515 -50353654 - L1MA2 LINE L1 -3650 3915 2766 7597 209 57 12 chr13 51519519 51519773 -50353396 - L1MA2 LINE L1 -5864 1701 1460 1692 157 46 30 chr13 51519773 51520142 -50353027 - THE1C LTR MaLR 0 375 1 7597 209 57 12 chr13 51520142 51520186 -50352983 - L1MA2 LINE L1 -6105 1460 1419 219 36 0 0 chr13 51520186 51520214 -50352955 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 7597 209 57 12 chr13 51520214 51521542 -50351627 - L1MA2 LINE L1 -6146 1419 2 233 379 82 42 chr13 51521724 51522078 -50351091 + L3 LINE CR1 767 1134 -443 309 186 34 0 chr13 51522091 51522150 -50351019 - MLT1B LTR MaLR -329 61 1 1554 119 76 24 chr13 51522501 51522752 -50350417 + AluSx SINE Alu 29 292 -20 234 0 0 0 chr13 51523169 51523195 -50349974 + (T)n Simple_repeat Simple_repeat 1 26 0 1302 337 154 34 chr13 51523541 51524987 -50348182 + L2 LINE L2 1355 2974 -340 701 301 136 5 chr13 51525022 51525404 -50347765 + L2 LINE L2 2882 3313 0 929 271 0 0 chr13 51525513 51525701 -50347468 - MER58A DNA MER1_type -30 194 7 217 345 117 27 chr13 51526017 51526385 -50346784 + L2 LINE L2 1294 1694 -1620 31 76 0 0 chr13 51526394 51526460 -50346709 + AT_rich Low_complexity Low_complexity 1 66 0 205 169 11 180 chr13 51526643 51526732 -50346437 + L2 LINE L2 1882 1955 -1359 401 0 0 20 chr13 51527495 51527545 -50345624 + (TG)n Simple_repeat Simple_repeat 2 50 0 2124 99 0 7 chr13 51527545 51527828 -50345341 - AluSc SINE Alu -28 281 1 288 329 51 0 chr13 51528246 51528325 -50344844 + L2 LINE L2 3181 3263 -9 43 35 0 0 chr13 51528646 51528703 -50344466 + AT_rich Low_complexity Low_complexity 1 57 0 24 32 0 0 chr13 51530137 51530168 -50343001 + AT_rich Low_complexity Low_complexity 1 31 0 21 89 0 0 chr13 51530457 51530513 -50342656 + AT_rich Low_complexity Low_complexity 1 56 0 672 306 154 54 chr13 51530921 51531434 -50341735 - L2 LINE L2 -193 3120 2528 2172 122 0 0 chr13 51531434 51531729 -50341440 + AluSx SINE Alu 7 301 -11 672 306 154 54 chr13 51531729 51531811 -50341358 - L2 LINE L2 -785 2528 2456 250 159 16 32 chr13 51532049 51532112 -50341057 + CT-rich Low_complexity Low_complexity 3 64 0 733 271 32 14 chr13 51532813 51533031 -50340138 - MIR SINE MIR 0 262 41 274 284 155 17 chr13 51533215 51533331 -50339838 - L2 LINE L2 0 3313 3182 3963 115 17 26 chr13 51533491 51534132 -50339037 + MER41B LTR ERV1 1 635 0 557 307 49 5 chr13 51535227 51535432 -50337737 + MIR SINE MIR 49 262 0 295 344 161 22 chr13 51535674 51536034 -50337135 - L3b LINE CR1 -50 1533 1124 2262 107 0 0 chr13 51536102 51536402 -50336767 - AluSq SINE Alu -13 300 1 1741 153 16 16 chr13 51536406 51536713 -50336456 - AluJo SINE Alu 0 312 6 208 348 118 7 chr13 51537080 51537215 -50335954 + MIR SINE MIR 98 247 -15 1279 234 0 4 chr13 51537533 51537772 -50335397 + Tigger5 DNA MER2_type 14 251 -2072 2836 171 23 10 chr13 51537779 51538294 -50334875 + Tigger5 DNA MER2_type 1802 2323 0 189 281 246 9 chr13 51538907 51539021 -50334148 - MIR SINE MIR -26 236 96 257 311 71 14 chr13 51539345 51539533 -50333636 + MIR SINE MIR 38 236 -26 28 0 0 0 chr13 51539850 51539878 -50333291 + AT_rich Low_complexity Low_complexity 1 28 0 5255 163 36 11 chr13 51540195 51541687 -50331482 - L1PB4 LINE L1 0 6156 4622 287 333 0 0 chr13 51541718 51541808 -50331361 - L1ME LINE L1 -476 5645 5556 24 32 0 0 chr13 51543706 51543737 -50329432 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 51543819 51543840 -50329329 + AT_rich Low_complexity Low_complexity 1 21 0 202 367 86 22 chr13 51544417 51544556 -50328613 - L2 LINE L2 -581 2733 2586 898 288 55 94 chr13 51544895 51545493 -50327676 - MER77 LTR ERV1 -24 581 132 234 330 70 0 chr13 51546318 51546418 -50326751 - L2 LINE L2 -34 3279 3173 981 248 27 27 chr13 51546585 51546843 -50326326 - LTR39 LTR ERV1 0 783 526 691 238 39 44 chr13 51546825 51547006 -50326163 - LTR39 LTR ERV1 -376 407 228 * 1666 133 157 90 chr13 51547049 51547426 -50325743 - MER4A LTR ERV1 0 664 263 575 162 0 10 chr13 51547426 51547525 -50325644 - MER4A LTR ERV1 -566 98 1 * 768 153 73 7 chr13 51547525 51547674 -50325495 - LTR39 LTR ERV1 -624 159 1 182 343 58 52 chr13 51547688 51547860 -50325309 - L2 LINE L2 -267 3005 2833 3369 226 97 51 chr13 51547863 51547970 -50325199 - L1MDb LINE L1 -4413 1993 1892 2643 109 0 6 chr13 51547970 51548336 -50324833 + THE1B LTR MaLR 1 364 0 3369 226 97 51 chr13 51548336 51548748 -50324421 - L1MDb LINE L1 -4514 1892 1500 327 49 0 0 chr13 51548748 51548789 -50324380 + (TG)n Simple_repeat Simple_repeat 2 42 0 3369 226 97 51 chr13 51548789 51549838 -50323331 - L1MDb LINE L1 -4906 1500 356 1065 262 66 100 chr13 51549856 51550466 -50322703 - L1MDb LINE L1 -5801 608 20 291 346 19 10 chr13 51550839 51550943 -50322226 - L2 LINE L2 -24 3289 3185 27 49 0 0 chr13 51551036 51551077 -50322092 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr13 51551396 51551417 -50321752 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 51551980 51552003 -50321166 + AT_rich Low_complexity Low_complexity 1 23 0 478 294 30 20 chr13 51553096 51553293 -50319876 + HERVL LTR ERVL 4435 4633 -852 2393 179 12 9 chr13 51553381 51553801 -50319368 - MSTB LTR MaLR -5 421 1 250 311 0 0 chr13 51555536 51555597 -50317572 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1224 261 102 35 chr13 51555806 51556315 -50316854 + MER21B LTR ERV1 1 543 -320 27 29 0 0 chr13 51556345 51556379 -50316790 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr13 51556889 51556919 -50316250 + AT_rich Low_complexity Low_complexity 1 30 0 283 318 45 11 chr13 51557840 51557928 -50315241 - L2 LINE L2 -20 3293 3203 901 286 49 9 chr13 51558095 51558522 -50314647 + L1M4 LINE L1 2477 2920 -3226 27 62 0 0 chr13 51559529 51559577 -50313592 + AT_rich Low_complexity Low_complexity 1 48 0 227 195 203 86 chr13 51561128 51561256 -50311913 + L2 LINE L2 353 495 -2819 1121 225 78 0 chr13 51561562 51561679 -50311490 + AluJo SINE Alu 1 107 -205 502 81 0 23 chr13 51561679 51561766 -50311403 + (TAAAA)n Simple_repeat Simple_repeat 3 87 0 1121 225 78 0 chr13 51561766 51561879 -50311290 + AluJo SINE Alu 107 249 -63 790 294 174 36 chr13 51561907 51562846 -50310323 - LTR28 LTR ERV1 0 1755 1 26 30 0 0 chr13 51562865 51562898 -50310271 + AT_rich Low_complexity Low_complexity 1 33 0 255 194 161 0 chr13 51564371 51564433 -50308736 + HERVL LTR ERVL 3433 3504 -2150 4834 141 239 108 chr13 51564436 51565937 -50307232 - pTR5 LTR ERV1 0 2438 742 483 335 132 32 chr13 51565936 51566521 -50306648 + HERVL LTR ERVL 3501 4143 -1511 * 22 0 0 0 chr13 51567418 51567440 -50305729 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 51567848 51567879 -50305290 + AT_rich Low_complexity Low_complexity 1 31 0 3736 149 15 13 chr13 51569540 51570213 -50302956 + L1MA4 LINE L1 5621 6294 -6 24 53 0 0 chr13 51571433 51571471 -50301698 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 51571566 51571587 -50301582 + AT_rich Low_complexity Low_complexity 1 21 0 193 57 57 0 chr13 51573072 51573107 -50300062 + (TA)n Simple_repeat Simple_repeat 2 38 0 278 314 100 7 chr13 51573108 51573248 -50299921 + MIR SINE MIR 106 258 -4 1469 209 87 3 chr13 51573626 51573937 -50299232 - MER1B DNA MER1_type 0 337 1 348 279 131 25 chr13 51574110 51574232 -50298937 + MER5A DNA MER1_type 49 183 -6 816 231 141 41 chr13 51574255 51574545 -50298624 - MER21B LTR ERV1 -79 784 466 2016 148 0 0 chr13 51575606 51575917 -50297252 - AluSx SINE Alu -1 311 1 301 186 169 76 chr13 51576404 51576522 -50296647 - MER94 DNA DNA 0 134 6 21 100 0 0 chr13 51576623 51576693 -50296476 + AT_rich Low_complexity Low_complexity 1 70 0 213 278 0 0 chr13 51577046 51577100 -50296069 + (CA)n Simple_repeat Simple_repeat 2 55 0 24 53 0 0 chr13 51577397 51577435 -50295734 + AT_rich Low_complexity Low_complexity 1 38 0 1909 147 0 4 chr13 51577435 51577714 -50295455 + AluSg SINE Alu 2 279 -31 249 235 25 0 chr13 51577715 51577796 -50295373 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 195 256 67 44 chr13 51578303 51578393 -50294776 + MIR3 SINE MIR 111 202 -6 2335 74 3 17 chr13 51578861 51579160 -50294009 + AluY SINE Alu 1 295 -16 617 68 0 11 chr13 51579161 51579249 -50293920 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 64 0 0 chr13 51579426 51579473 -50293696 + AT_rich Low_complexity Low_complexity 1 47 0 405 0 0 0 chr13 51580892 51580937 -50292232 + (CA)n Simple_repeat Simple_repeat 2 46 0 6622 157 48 3 chr13 51581744 51582906 -50290263 + Tigger3b DNA MER2_type 1 1214 -17 2214 113 0 16 chr13 51582906 51583224 -50289945 + AluSq SINE Alu 1 313 0 2818 173 12 26 chr13 51583886 51584291 -50288878 - MER61D LTR ERV1 -11 490 92 1870 158 0 0 chr13 51584291 51584589 -50288580 + AluY SINE Alu 1 298 -13 2818 173 12 26 chr13 51584589 51584674 -50288495 - MER61D LTR ERV1 -409 92 7 21 71 0 0 chr13 51584835 51584877 -50288292 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 51586944 51586976 -50286193 + AT_rich Low_complexity Low_complexity 1 32 0 228 135 0 0 chr13 51587085 51587122 -50286047 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 1060 293 113 17 chr13 51588944 51589538 -50283631 + Charlie7 DNA MER1_type 1686 2336 -276 2353 197 14 10 chr13 51591330 51591823 -50281346 + L1MC2 LINE L1 5524 6018 -326 1723 207 21 36 chr13 51591826 51592043 -50281126 + LTR52 LTR ERVL 5 215 -206 2784 6 0 6 chr13 51592043 51592354 -50280815 + AluYb8 SINE Alu 1 309 -9 1723 207 21 36 chr13 51592354 51592557 -50280612 + LTR52 LTR ERVL 215 419 -2 1559 254 31 18 chr13 51592568 51592957 -50280212 + LTR52-int LTR ERVL 13 406 -3150 297 242 15 0 chr13 51592965 51593031 -50280138 + LTR52-int LTR ERVL 846 912 -2644 1158 161 91 21 chr13 51593233 51593475 -50279694 - L1MB1 LINE L1 -79 6110 5852 969 148 61 15 chr13 51593474 51593670 -50279499 + L1MA10 LINE L1 6129 6333 -1 2684 252 63 43 chr13 51593675 51594599 -50278570 + LTR52-int LTR ERVL 1157 2098 -3587 192 125 0 0 chr13 51595528 51595560 -50277609 + (GA)n Simple_repeat Simple_repeat 1 32 0 1342 119 4 103 chr13 51595878 51596130 -50277039 + AluSq SINE Alu 1 227 -86 252 22 43 22 chr13 51598030 51598076 -50275093 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 193 330 77 0 chr13 51598366 51598457 -50274712 - MIR SINE MIR -4 258 161 442 342 27 0 chr13 51598865 51599049 -50274120 - MIR SINE MIR 0 262 74 344 241 37 0 chr13 51599327 51599435 -50273734 + (TA)n Simple_repeat Simple_repeat 2 113 0 35 54 0 0 chr13 51599560 51599616 -50273553 + AT_rich Low_complexity Low_complexity 1 56 0 487 266 119 66 chr13 51599919 51600238 -50272931 + MLT1H LTR MaLR 211 546 -3 23 33 0 0 chr13 51600487 51600517 -50272652 + AT_rich Low_complexity Low_complexity 1 30 0 235 330 0 11 chr13 51601018 51601112 -50272057 - MIR SINE MIR -100 108 16 1092 249 13 4 chr13 51602013 51602271 -50270898 - MIR SINE MIR -5 257 5 276 306 95 30 chr13 51604173 51604509 -50268660 - L1MEc LINE L1 -4392 2329 1972 2241 154 22 0 chr13 51604522 51604878 -50268291 - THE1B LTR MaLR 0 364 1 3124 88 0 0 chr13 51604878 51605287 -50267882 - THE1B-int LTR MaLR 0 1580 1172 * 4253 102 7 62 chr13 51605280 51605960 -50267209 - THE1B-int LTR MaLR -937 643 1 2076 153 34 0 chr13 51605960 51606312 -50266857 - THE1B LTR MaLR 0 364 1 426 298 79 55 chr13 51606316 51606913 -50266256 - L1MEc LINE L1 -4622 1918 1308 2092 118 0 0 chr13 51606923 51607210 -50265959 - AluSc SINE Alu -22 287 1 2848 184 16 47 chr13 51607231 51607910 -50265259 + L1MC2 LINE L1 5676 6333 -11 682 311 72 70 chr13 51608082 51608681 -50264488 - L1MEc LINE L1 -5469 1061 462 212 167 50 0 chr13 51608724 51608784 -50264385 + (TTA)n Simple_repeat Simple_repeat 1 63 0 1148 127 127 0 chr13 51610180 51610393 -50262776 - L1MA4 LINE L1 0 6300 6061 42 89 0 0 chr13 51610518 51610630 -50262539 + AT_rich Low_complexity Low_complexity 1 112 0 22 35 0 0 chr13 51611922 51611951 -50261218 + AT_rich Low_complexity Low_complexity 1 29 0 1325 274 115 35 chr13 51612268 51613467 -50259702 + L1ME2 LINE L1 4864 6177 -1 306 0 0 0 chr13 51614241 51614275 -50258894 + (CA)n Simple_repeat Simple_repeat 2 35 0 1069 284 50 60 chr13 51614348 51614848 -50258321 - L1ME LINE L1 -5543 527 33 30 69 0 0 chr13 51615308 51615366 -50257803 + AT_rich Low_complexity Low_complexity 1 58 0 1725 162 55 0 chr13 51615996 51616286 -50256883 - AluSx SINE Alu -6 306 1 3393 230 72 37 chr13 51616342 51616644 -50256525 - L1MD1 LINE L1 0 6636 6346 2325 78 0 7 chr13 51616644 51616951 -50256218 - AluSc SINE Alu -4 305 1 3393 230 72 37 chr13 51616951 51617828 -50255341 - L1MD1 LINE L1 -290 6346 5410 2242 108 6 24 chr13 51617828 51618163 -50255006 - L1PA15 LINE L1 -7 6158 5830 3393 230 72 37 chr13 51618163 51618325 -50254844 - L1MD1 LINE L1 -1226 5410 5255 800 124 28 6 chr13 51618342 51618508 -50254661 - L1MD1 LINE L1 -1214 5326 4358 6921 45 27 2 chr13 51618508 51619506 -50253663 + L1PA5 LINE L1 5137 6154 0 394 202 77 0 chr13 51619509 51619613 -50253556 - L1MD1 LINE L1 -2108 4432 4321 2083 166 28 47 chr13 51619614 51620109 -50253060 - L1MD1 LINE L1 -4589 1951 1466 1271 287 79 39 chr13 51620144 51620722 -50252447 - L1MD1 LINE L1 -5497 1043 258 342 91 0 0 chr13 51620722 51620777 -50252392 + (TG)n Simple_repeat Simple_repeat 2 56 0 1271 287 79 39 chr13 51620777 51620919 -50252250 - L1MD1 LINE L1 -6282 258 123 6236 151 48 31 chr13 51621679 51622189 -50250980 - Tigger3b DNA MER2_type -1797 1231 731 1331 149 9 146 chr13 51622189 51622378 -50250791 - AluJb SINE Alu 0 310 97 225 0 0 0 chr13 51622378 51622403 -50250766 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1331 149 9 146 chr13 51622403 51622429 -50250740 - AluJb SINE Alu -213 97 69 1755 164 0 0 chr13 51622429 51622704 -50250465 - AluSx SINE Alu -37 275 1 1331 149 9 146 chr13 51622704 51622842 -50250327 - AluJb SINE Alu -241 69 1 6236 151 48 31 chr13 51622842 51623535 -50249634 - Tigger3b DNA MER2_type -2297 731 6 1492 183 25 16 chr13 51623966 51624289 -50248880 + L1MA4 LINE L1 5966 6291 -9 321 117 0 0 chr13 51625175 51625235 -50247934 + (CAT)n Simple_repeat Simple_repeat 3 62 0 33 25 0 0 chr13 51626138 51626178 -50246991 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr13 51628217 51628240 -50244929 + AT_rich Low_complexity Low_complexity 1 23 0 2745 193 5 10 chr13 51628434 51629013 -50244156 + L1P LINE L1 4305 4880 -1266 4357 151 57 36 chr13 51629057 51629960 -50243209 + L1MA9 LINE L1 5392 6312 0 9584 219 79 18 chr13 51630062 51632776 -50240393 - L1 LINE L1 -745 5465 2587 1364 179 37 100 chr13 51632778 51633037 -50240132 - L1 LINE L1 -4779 1362 1139 2150 125 0 3 chr13 51633037 51633348 -50239821 - AluSg SINE Alu 0 310 1 1364 179 37 100 chr13 51633348 51633517 -50239652 - L1 LINE L1 -5002 1139 961 710 325 41 38 chr13 51634258 51634701 -50238468 - L1 LINE L1 -5696 445 2 27 0 0 0 chr13 51635249 51635276 -50237893 + AT_rich Low_complexity Low_complexity 1 27 0 216 152 0 89 chr13 51635341 51635367 -50237802 + (CATA)n Simple_repeat Simple_repeat 2 29 -44 948 218 97 61 chr13 51635367 51635697 -50237472 + MER2 DNA MER2_type 2 343 -1 216 152 0 89 chr13 51635697 51635749 -50237420 + (CATA)n Simple_repeat Simple_repeat 29 73 0 22 56 0 0 chr13 51635754 51635790 -50237379 + AT_rich Low_complexity Low_complexity 1 36 0 348 347 39 45 chr13 51636198 51636555 -50236614 + L1M4 LINE L1 2359 2713 -3433 1522 211 45 30 chr13 51636863 51637265 -50235904 - L1MA10 LINE L1 0 6334 5927 364 361 63 58 chr13 51637299 51637681 -50235488 + L1MEd LINE L1 564 947 -5469 244 280 20 20 chr13 51637760 51637860 -50235309 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 317 261 40 60 chr13 51637902 51638068 -50235101 + L1MEd LINE L1 1547 1751 -4677 1937 116 7 7 chr13 51638172 51638456 -50234713 + AluSc SINE Alu 14 297 -12 25 53 0 18 chr13 51638528 51638562 -50234607 + AT_rich Low_complexity Low_complexity 1 35 -21 18822 30 6 3 chr13 51638562 51641610 -50231559 + L1PA4 LINE L1 3105 6154 -1 25 53 0 18 chr13 51641610 51641632 -50231537 + AT_rich Low_complexity Low_complexity 35 56 0 1736 166 78 26 chr13 51641898 51642242 -50230927 - THE1B LTR MaLR -2 362 1 1572 328 58 40 chr13 51642559 51643437 -50229732 - HERV16 LTR ERVL -1905 3091 2257 1314 163 18 4 chr13 51643437 51643664 -50229505 + MER30 DNA MER1_type 1 230 0 1572 328 58 40 chr13 51643664 51644265 -50228904 - HERV16 LTR ERVL -2739 2257 1668 1214 324 37 2 chr13 51644451 51644883 -50228286 - HERV16 LTR ERVL -3585 1411 965 673 318 113 32 chr13 51645028 51645399 -50227770 - HERV16 LTR ERVL -4203 793 393 1762 173 0 23 chr13 51645431 51645732 -50227437 + AluJb SINE Alu 5 298 -14 188 345 0 0 chr13 51645806 51645864 -50227305 - MIR SINE MIR 0 262 205 2249 93 0 3 chr13 51645865 51646165 -50227004 - AluSx SINE Alu -13 299 1 528 90 26 0 chr13 51646514 51646592 -50226577 - MADE1 DNA Mariner 0 80 1 283 233 19 0 chr13 51650026 51650129 -50223040 + (TA)n Simple_repeat Simple_repeat 2 106 0 1715 180 52 0 chr13 51650137 51650464 -50222705 - MER7A DNA MER2_type -4 342 1 2382 198 54 2 chr13 51650659 51651159 -50222010 + L1PBa LINE L1 689 1214 -5649 21 82 0 0 chr13 51651650 51651699 -50221470 + AT_rich Low_complexity Low_complexity 1 49 0 300 342 18 40 chr13 51651885 51652032 -50221137 + L1MEd LINE L1 930 1073 -5046 1777 111 39 29 chr13 51652032 51652357 -50220812 + AluSq SINE Alu 1 328 0 300 342 18 40 chr13 51652357 51652433 -50220736 + L1MEd LINE L1 1073 1149 -4970 246 297 97 6 chr13 51652447 51652622 -50220547 + L1MEd LINE L1 1154 1344 -4785 270 81 0 0 chr13 51652674 51652711 -50220458 + (CA)n Simple_repeat Simple_repeat 2 38 0 409 239 163 43 chr13 51652813 51652997 -50220172 + L2 LINE L2 2194 2399 -915 444 269 84 18 chr13 51653108 51653275 -50219894 + L2 LINE L2 2678 2855 -459 2359 104 0 0 chr13 51653769 51654077 -50219092 + AluSg SINE Alu 1 308 -2 388 267 51 51 chr13 51654097 51654292 -50218877 + L1MB4 LINE L1 853 1047 -5495 2525 213 13 14 chr13 51654292 51654916 -50218253 - L1 LINE L1 -1472 4674 4052 4040 160 67 21 chr13 51654918 51656163 -50217006 + L1PA16 LINE L1 4875 6158 -8 1832 135 7 14 chr13 51656235 51656516 -50216653 + AluSx SINE Alu 1 279 -33 6389 247 104 24 chr13 51656516 51659037 -50214132 + L1MB4 LINE L1 1535 3852 -2826 1992 197 75 8 chr13 51659037 51659438 -50213731 + MSTA LTR MaLR 1 428 0 6389 247 104 24 chr13 51659438 51661677 -50211492 + L1MB4 LINE L1 3852 6678 0 454 313 101 57 chr13 51661682 51662050 -50211119 + L2 LINE L2 2930 3313 0 30 59 0 0 chr13 51663352 51663403 -50209766 + AT_rich Low_complexity Low_complexity 1 51 0 1798 115 51 24 chr13 51665219 51665515 -50207654 + AluSx SINE Alu 1 304 -8 287 224 35 12 chr13 51665601 51665686 -50207483 + L1MCc LINE L1 24 110 -6313 419 314 61 42 chr13 51666180 51666481 -50206688 + L1MCc LINE L1 1569 2161 -4961 499 281 69 13 chr13 51666489 51666720 -50206449 + L1MCc LINE L1 2238 2481 -4641 29 0 0 0 chr13 51666733 51666762 -50206407 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 51666992 51667013 -50206156 + AT_rich Low_complexity Low_complexity 1 21 0 3138 152 6 15 chr13 51667140 51667672 -50205497 + MER1A DNA MER1_type 1 527 0 1355 218 74 80 chr13 51668850 51668964 -50204205 + MLT1D LTR MaLR 6 119 -386 2190 108 7 0 chr13 51668964 51669269 -50203900 + AluSc SINE Alu 1 307 -2 1355 218 74 80 chr13 51669269 51669653 -50203516 + MLT1D LTR MaLR 119 501 -4 200 302 147 26 chr13 51669723 51669839 -50203330 + L2 LINE L2 3134 3263 -9 7916 173 91 31 chr13 51670089 51671743 -50201426 + MER52A LTR ERV1 3 1754 -1 2011 178 29 6 chr13 51672200 51672548 -50200621 - MLT1A1 LTR MaLR 0 365 10 2910 248 121 30 chr13 51673669 51674336 -50198833 + MER45B DNA AcHobo 2 782 -799 1577 172 40 33 chr13 51674336 51674455 -50198714 + AluJo SINE Alu 1 118 -194 222 37 0 0 chr13 51674455 51674482 -50198687 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1577 172 40 33 chr13 51674482 51674664 -50198505 + AluJo SINE Alu 118 304 -8 2910 248 121 30 chr13 51674664 51674949 -50198220 + MER45B DNA AcHobo 782 1040 0 2143 171 43 31 chr13 51676524 51676945 -50196224 + MSTB LTR MaLR 1 426 0 249 408 10 10 chr13 51678326 51678522 -50194647 - L2 LINE L2 0 3313 3118 1311 164 0 0 chr13 51678605 51678824 -50194345 - MER41B LTR ERV1 -2 633 415 227 196 59 0 chr13 51678844 51678895 -50194274 + MER41B LTR ERV1 334 387 -248 2007 154 10 58 chr13 51678900 51679132 -50194037 - MER41B LTR ERV1 -239 396 191 1976 141 0 10 chr13 51679132 51679430 -50193739 - AluSx SINE Alu -17 295 1 2007 154 10 58 chr13 51679430 51679613 -50193556 - MER41B LTR ERV1 -444 191 1 1903 134 74 26 chr13 51680367 51680718 -50192451 - THE1C LTR MaLR 0 375 8 24 0 0 0 chr13 51681355 51681379 -50191790 + AT_rich Low_complexity Low_complexity 1 24 0 727 186 16 0 chr13 51681642 51681771 -50191398 + FLAM_C SINE Alu 1 131 -2 535 275 122 20 chr13 51682007 51682254 -50190915 - L1ME1 LINE L1 -5 6161 5890 368 136 0 15 chr13 51682627 51682693 -50190476 - MER72 LTR ERV1 -657 65 1 1123 251 57 14 chr13 51685003 51685370 -50187799 + MER110 LTR ERV1 60 442 -49 395 340 102 9 chr13 51685493 51685708 -50187461 - MIR SINE MIR -12 250 16 531 175 35 213 chr13 51685716 51685776 -50187393 - MER96B DNA MER1_type? -182 235 166 3231 91 4 10 chr13 51685776 51686259 -50186910 + L1PA8 LINE L1 5693 6172 0 531 175 35 213 chr13 51686259 51686484 -50186685 - MER96B DNA MER1_type? -251 166 1 247 308 0 33 chr13 51686537 51686628 -50186541 + MIR SINE MIR 66 153 -109 5715 251 52 75 chr13 51686823 51690193 -50182976 + L1MB3 LINE L1 11 3376 -3581 916 286 31 29 chr13 51690210 51690975 -50182194 + L1MB3 LINE L1 3449 4303 -2654 18952 94 8 0 chr13 51690987 51694565 -50178604 + L1PA7 LINE L1 2556 6151 -3 432 236 10 0 chr13 51694566 51694680 -50178489 + L1MB3 LINE L1 4525 4646 -2311 232 105 26 0 chr13 51694690 51694728 -50178441 + MADE1 DNA Mariner 1 39 -41 2113 140 3 0 chr13 51694729 51695037 -50178132 - AluSg SINE Alu -1 309 1 672 248 40 0 chr13 51696463 51696661 -50176508 + MER6B DNA MER2_type 5 210 0 259 300 47 53 chr13 51696765 51696915 -50176254 + MER5B DNA MER1_type 6 154 -24 1999 120 19 29 chr13 51697064 51697380 -50175789 - AluSp SINE Alu 0 313 1 291 266 98 28 chr13 51697385 51697528 -50175641 - HsTC2 DNA Tc2 -118 1780 1628 1270 202 5 84 chr13 51697570 51697753 -50175416 + L1MA4 LINE L1 5771 5908 -392 1762 153 0 4 chr13 51697753 51698034 -50175135 + AluSx SINE Alu 1 280 -32 1270 202 5 84 chr13 51698034 51698241 -50174928 + L1MA4 LINE L1 5908 6130 -170 1979 126 3 10 chr13 51698321 51698631 -50174538 - AluSp SINE Alu -5 308 1 2818 240 25 41 chr13 51698680 51699671 -50173498 + L1MB3 LINE L1 5629 6634 -360 1906 125 4 4 chr13 51699671 51699950 -50173219 + AluSx SINE Alu 1 279 -33 248 68 0 23 chr13 51699956 51700000 -50173169 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 2818 240 25 41 chr13 51700000 51700105 -50173064 + L1MB3 LINE L1 6639 6744 -250 1993 152 0 0 chr13 51700105 51700407 -50172762 + AluSx SINE Alu 3 304 -8 2818 240 25 41 chr13 51700407 51700659 -50172510 + L1MB3 LINE L1 6744 6964 -30 283 332 51 19 chr13 51701489 51701703 -50171466 - MIR SINE MIR -10 252 32 2215 92 0 16 chr13 51702097 51702412 -50170757 + AluSg SINE Alu 1 310 0 253 301 44 26 chr13 51702805 51702918 -50170251 + L2 LINE L2 3158 3272 0 2046 103 0 10 chr13 51702983 51703285 -50169884 - AluSc SINE Alu -10 299 1 1005 222 267 29 chr13 51704985 51707133 -50166036 - SATR1 Satellite Satellite -1 2658 1 343 225 239 14 chr13 51707162 51707304 -50165865 - SATR1 Satellite Satellite -95 375 202 1686 210 108 36 chr13 51707517 51708846 -50164323 - SATR1 Satellite Satellite -20 1425 1 377 211 12 47 chr13 51708961 51709132 -50164037 + (TTA)n Simple_repeat Simple_repeat 2 166 0 34 65 0 0 chr13 51709160 51709222 -50163947 + AT_rich Low_complexity Low_complexity 1 62 0 681 205 70 0 chr13 51709222 51709378 -50163791 + SATR1 Satellite Satellite 154 320 -150 323 283 58 25 chr13 51710595 51710715 -50162454 - L2 LINE L2 0 3313 3190 278 349 9 0 chr13 51710932 51711038 -50162131 - L2 LINE L2 -455 2859 2753 205 153 17 17 chr13 51711419 51711478 -50161691 + CT-rich Low_complexity Low_complexity 1 59 0 203 340 48 10 chr13 51712343 51712446 -50160723 + L2 LINE L2 605 711 -2603 212 333 8 34 chr13 51712504 51712621 -50160548 + L2 LINE L2 2628 2741 -573 1677 164 74 2 chr13 51712692 51713027 -50160142 + L1PA16 LINE L1 5641 5996 -155 941 213 20 0 chr13 51713178 51713380 -50159789 + L1PA16 LINE L1 5960 6165 -1 3031 153 29 20 chr13 51713382 51713937 -50159232 + MER6A DNA MER2_type 46 605 0 9292 53 7 2 chr13 51714403 51716348 -50156821 - L1PA5 LINE L1 -1 6153 4199 692 280 44 8 chr13 51717261 51717511 -50155658 + MER110 LTR ERV1 211 469 -22 800 122 30 0 chr13 51717520 51717651 -50155518 + L1PA15 LINE L1 6028 6162 -3 184 274 48 16 chr13 51717839 51717901 -50155268 + L2 LINE L2 2998 3061 -211 22 0 0 0 chr13 51718133 51718155 -50155014 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 51718225 51718256 -50154913 + AT_rich Low_complexity Low_complexity 1 31 0 472 228 83 55 chr13 51718525 51718779 -50154390 + LTR37B LTR ERV1 194 454 -14 212 253 74 53 chr13 51719182 51719277 -50153892 - MER5A DNA MER1_type -5 184 88 505 301 78 23 chr13 51719322 51719578 -50153591 + LTR33 LTR ERVL 1 270 -251 203 175 0 0 chr13 51719888 51719928 -50153241 + (TAA)n Simple_repeat Simple_repeat 1 40 0 22 70 0 0 chr13 51721300 51721343 -50151826 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 51721851 51721872 -50151297 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 51722945 51722973 -50150196 + AT_rich Low_complexity Low_complexity 1 28 0 570 300 73 5 chr13 51724064 51724284 -50148885 + MER110 LTR ERV1 238 472 -19 22 35 0 0 chr13 51724484 51724513 -50148656 + AT_rich Low_complexity Low_complexity 1 29 0 1599 235 24 22 chr13 51725024 51725437 -50147732 + MLT2D LTR ERVL 1 414 0 309 304 51 51 chr13 51726101 51726318 -50146851 + MER110-int LTR ERV1 154 370 -4277 3127 158 61 23 chr13 51726408 51726707 -50146462 + L1PB4 LINE L1 5476 5762 -394 284 0 28 0 chr13 51726707 51726743 -50146426 + (CA)n Simple_repeat Simple_repeat 2 38 0 3127 158 61 23 chr13 51726743 51727087 -50146082 + L1PB4 LINE L1 5762 6143 -13 23 0 0 0 chr13 51727349 51727372 -50145797 + AT_rich Low_complexity Low_complexity 1 23 0 260 158 0 0 chr13 51727375 51727413 -50145756 + Alu SINE Alu 2 39 -269 3226 305 75 70 chr13 51727463 51729878 -50143291 + MER110A-int LTR ERV1 1386 3788 -859 378 0 0 0 chr13 51729878 51729920 -50143249 + (TC)n Simple_repeat Simple_repeat 2 43 0 369 0 0 0 chr13 51729919 51729960 -50143209 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 3226 305 75 70 chr13 51729920 51730168 -50143001 + MER110A-int LTR ERV1 3788 4033 -614 1363 191 71 0 chr13 51730168 51730435 -50142734 + AluJb SINE Alu 1 286 -26 3226 305 75 70 chr13 51730435 51731333 -50141836 + MER110A-int LTR ERV1 4033 4391 -256 302 206 56 75 chr13 51731438 51731545 -50141624 + MER110A LTR ERV1 72 176 -292 481 270 31 6 chr13 51731724 51731883 -50141286 + MER110 LTR ERV1 306 468 -23 225 132 0 0 chr13 51734185 51734223 -50138946 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 243 304 104 0 chr13 51734934 51735049 -50138120 + MIR3 SINE MIR 78 204 -4 1512 223 22 17 chr13 51736326 51736685 -50136484 - MLT1A1 LTR MaLR 0 365 5 25 31 0 0 chr13 51736858 51736890 -50136279 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr13 51737084 51737118 -50136051 + AT_rich Low_complexity Low_complexity 1 34 0 200 59 29 0 chr13 51737453 51737487 -50135682 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 966 250 28 0 chr13 51738343 51738559 -50134610 - MER58A DNA MER1_type 0 224 3 187 272 111 0 chr13 51740426 51740507 -50132662 - MIR SINE MIR -102 106 17 25 0 0 0 chr13 51740880 51740905 -50132264 + AT_rich Low_complexity Low_complexity 1 25 0 1833 139 0 48 chr13 51741962 51742294 -50130875 - AluSx SINE Alu 0 322 5 26 64 0 0 chr13 51743941 51743988 -50129181 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr13 51744068 51744090 -50129079 + AT_rich Low_complexity Low_complexity 1 22 0 1562 161 64 14 chr13 51744093 51744373 -50128796 - MSTA LTR MaLR -55 373 80 2006 174 36 38 chr13 51744373 51744928 -50128241 - MLT2A2 LTR ERVL 0 554 1 254 108 0 0 chr13 51744928 51744965 -50128204 - MSTA LTR MaLR -343 83 47 564 81 92 0 chr13 51744986 51745073 -50128096 - L1PB1 LINE L1 -5 6146 6052 23 33 0 0 chr13 51745340 51745370 -50127799 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chr13 51745686 51745730 -50127439 + AT_rich Low_complexity Low_complexity 1 44 0 396 252 81 8 chr13 51745737 51745860 -50127309 - LTR33A LTR ERVL 0 523 392 381 335 86 17 chr13 51746108 51746341 -50126828 - LTR33A LTR ERVL -263 260 12 380 279 145 48 chr13 51746621 51746958 -50126211 - MLT1L LTR MaLR -42 573 204 21 0 0 0 chr13 51747289 51747310 -50125859 + AT_rich Low_complexity Low_complexity 1 21 0 360 341 48 12 chr13 51747406 51747573 -50125596 - L1MC/D LINE L1 -2062 5746 5574 246 280 98 38 chr13 51747652 51747784 -50125385 - L1MC/D LINE L1 -929 5430 5291 31 44 0 0 chr13 51748182 51748227 -50124942 + AT_rich Low_complexity Low_complexity 1 45 0 239 232 29 0 chr13 51748444 51748513 -50124656 - L1M1 LINE L1 -3932 3633 3563 419 252 25 8 chr13 51748986 51749105 -50124064 + MER104 DNA Tc2 30 150 -30 197 232 14 0 chr13 51749242 51749311 -50123858 + GA-rich Low_complexity Low_complexity 2 71 0 1860 212 94 28 chr13 51749479 51749945 -50123224 - MLT1D LTR MaLR 0 505 9 23 33 0 0 chr13 51750526 51750556 -50122613 + AT_rich Low_complexity Low_complexity 1 30 0 190 231 26 0 chr13 51751303 51751342 -50121827 - MIR SINE MIR -6 256 217 567 286 57 48 chr13 51751371 51751463 -50121706 + MIR SINE MIR 13 103 -159 2228 105 39 36 chr13 51751463 51751826 -50121343 + THE1B LTR MaLR 1 364 0 567 286 57 48 chr13 51751826 51751981 -50121188 + MIR SINE MIR 103 262 0 249 337 17 66 chr13 51751983 51752164 -50121005 - MIR SINE MIR -64 198 27 2023 125 3 29 chr13 51752967 51753278 -50119891 - AluSq SINE Alu -10 303 1 21 36 0 0 chr13 51753361 51753389 -50119780 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 51753552 51753580 -50119589 + AT_rich Low_complexity Low_complexity 1 28 0 23 97 0 0 chr13 51753609 51753681 -50119488 + AT_rich Low_complexity Low_complexity 1 72 0 1707 206 36 0 chr13 51755777 51756112 -50117057 + MER7A DNA MER2_type 2 346 0 209 405 14 0 chr13 51758981 51759055 -50114114 - L2 LINE L2 -37 3235 3161 243 0 0 0 chr13 51759256 51759283 -50113886 + (CA)n Simple_repeat Simple_repeat 1 27 0 606 296 24 0 chr13 51759694 51759863 -50113306 + MIR SINE MIR 69 241 -21 254 325 97 0 chr13 51760208 51760362 -50112807 + MIR SINE MIR 90 258 -4 890 216 62 10 chr13 51761007 51761215 -50111954 - MER20 DNA MER1_type 0 219 1 395 170 54 0 chr13 51762265 51762377 -50110792 + CT-rich Low_complexity Low_complexity 3 120 0 21 36 0 0 chr13 51762438 51762466 -50110703 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 51764730 51764772 -50108397 + AT_rich Low_complexity Low_complexity 1 42 0 323 254 28 0 chr13 51765032 51765103 -50108066 - MIR3 SINE MIR -28 180 108 21 36 0 0 chr13 51766178 51766206 -50106963 + AT_rich Low_complexity Low_complexity 1 28 0 264 30 0 0 chr13 51766501 51766534 -50106635 + (TG)n Simple_repeat Simple_repeat 2 34 0 990 179 11 0 chr13 51766553 51766737 -50106432 - L1PB4 LINE L1 -3 6153 5968 31 26 0 0 chr13 51767566 51767604 -50105565 + AT_rich Low_complexity Low_complexity 1 38 0 649 191 93 161 chr13 51767882 51768312 -50104857 - MER57A LTR ERV1 -2 401 1 1304 330 46 53 chr13 51768312 51769231 -50103938 - MER57A-int LTR ERV1 -393 7144 6233 287 252 0 84 chr13 51769618 51769737 -50103432 - MER57A-int LTR ERV1 -761 4110 4002 * 1230 252 47 74 chr13 51769724 51770296 -50102873 - MER57A-int LTR ERV1 -1342 6195 2445 2456 212 24 37 chr13 51770445 51771072 -50102097 - MER57A-int LTR ERV1 -1719 5818 5200 2111 229 70 104 chr13 51771077 51771395 -50101774 - MER57A-int LTR ERV1 -1891 3045 2718 1600 178 0 33 chr13 51771395 51771699 -50101470 + AluJb SINE Alu 3 296 -16 2111 229 70 104 chr13 51771699 51772593 -50100576 - MER57A-int LTR ERV1 -2218 2718 1874 272 176 39 0 chr13 51772612 51772663 -50100506 - MER34 LTR ERV1 -2 540 488 506 165 31 0 chr13 51772698 51772795 -50100374 - MER34 LTR ERV1 -308 234 135 1035 233 86 42 chr13 51772798 51773301 -50099868 - MER57A-int LTR ERV1 -3313 1810 1066 205 51 51 0 chr13 51773429 51773468 -50099701 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 478 210 43 29 chr13 51773489 51773627 -50099542 - MER57A-int LTR ERV1 -4503 433 294 905 293 25 0 chr13 51774272 51774511 -50098658 - MER57A-int LTR ERV1 -7290 247 3 786 237 61 54 chr13 51774517 51774875 -50098294 - MER57A LTR ERV1 -2 401 63 2510 53 0 0 chr13 51775087 51775387 -50097782 - AluY SINE Alu -11 300 1 35 78 0 0 chr13 51776247 51776324 -50096845 + AT_rich Low_complexity Low_complexity 1 77 0 191 362 122 30 chr13 51777679 51777983 -50095186 - L3 LINE CR1 -601 976 645 2381 237 44 28 chr13 51778108 51778684 -50094485 + MER82 DNA MER2_type 3 591 -62 2293 155 143 2 chr13 51778684 51779173 -50093996 + LTR64 LTR ERVK 1 558 0 2381 237 44 28 chr13 51779173 51779237 -50093932 + MER82 DNA MER2_type 591 653 0 285 333 11 0 chr13 51779364 51779457 -50093712 - L2 LINE L2 -1 3312 3219 282 323 71 62 chr13 51779925 51780247 -50092922 - L2 LINE L2 -500 2814 2490 880 326 42 10 chr13 51780320 51780630 -50092539 + LTR40b LTR ERVL 143 462 0 232 318 68 45 chr13 51781344 51781564 -50091605 - L2 LINE L2 -1876 1438 1214 402 344 8 0 chr13 51781947 51782078 -50091091 - L2 LINE L2 0 3313 3182 2139 130 42 17 chr13 51782750 51783105 -50090064 + THE1B LTR MaLR 1 364 0 308 316 53 9 chr13 51783726 51783840 -50089329 + L2 LINE L2 3154 3272 0 1805 174 82 28 chr13 51783866 51784257 -50088912 - MSTB LTR MaLR -13 413 2 461 188 20 0 chr13 51785075 51785176 -50087993 - L1PA16 LINE L1 -9 6157 6055 14398 33 0 0 chr13 51785557 51788053 -50085116 - L1PA3 LINE L1 -3 6152 3658 5323 13 0 0 chr13 51788053 51788676 -50084493 + L1P LINE L1 2453 3075 -3071 609 359 110 40 chr13 51789977 51790871 -50082298 + L3 LINE CR1 611 1566 -11 23 33 0 0 chr13 51791034 51791064 -50082105 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 51791453 51791502 -50081667 + AT_rich Low_complexity Low_complexity 1 49 0 29 0 0 45 chr13 51791593 51791608 -50081561 + AT_rich Low_complexity Low_complexity 1 15 -27 196 26 0 77 chr13 51791608 51791647 -50081522 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 29 0 0 45 chr13 51791647 51791675 -50081494 + AT_rich Low_complexity Low_complexity 15 42 0 28 29 0 0 chr13 51791737 51791772 -50081397 + AT_rich Low_complexity Low_complexity 1 35 0 1656 163 69 33 chr13 51793414 51793776 -50079393 + THE1C LTR MaLR 1 375 0 7538 172 39 10 chr13 51793946 51795490 -50077679 - L1 LINE L1 -743 6465 4877 3931 238 54 55 chr13 51795490 51797688 -50075481 - L1 LINE L1 -2848 4360 2153 188 83 0 28 chr13 51797688 51797724 -50075445 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 3931 238 54 55 chr13 51797724 51797955 -50075214 - L1 LINE L1 -5055 2153 1923 510 294 42 78 chr13 51797981 51798290 -50074879 - L1 LINE L1 -5265 1944 1647 1033 344 100 18 chr13 51798314 51798971 -50074198 - L1 LINE L1 -6152 1057 165 431 329 42 46 chr13 51798977 51799214 -50073955 - L1ME4a LINE L1 -293 5828 5593 187 383 70 16 chr13 51799384 51799512 -50073657 - L2 LINE L2 -37 3235 3101 304 219 27 0 chr13 51801679 51801752 -50071417 + L1MB2 LINE L1 5924 5998 -173 231 211 144 56 chr13 51801772 51801862 -50071307 - MIR3 SINE MIR -97 111 14 326 247 37 0 chr13 51801880 51801961 -50071208 - MIR SINE MIR -14 248 165 28 29 0 0 chr13 51802362 51802397 -50070772 + AT_rich Low_complexity Low_complexity 1 35 0 207 162 0 0 chr13 51803852 51803889 -50069280 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 308 309 79 62 chr13 51804051 51804355 -50068814 + L2 LINE L2 3005 3313 0 24 0 0 0 chr13 51804803 51804827 -50068342 + AT_rich Low_complexity Low_complexity 1 24 0 306 247 0 72 chr13 51805340 51805437 -50067732 - 7SK RNA RNA -101 92 3 349 319 139 0 chr13 51805534 51805678 -50067491 - MIR3 SINE MIR -41 167 4 531 243 40 63 chr13 51805965 51806187 -50066982 + L2 LINE L2 3097 3313 0 23 0 0 0 chr13 51806531 51806554 -50066615 + AT_rich Low_complexity Low_complexity 1 23 0 5839 119 26 0 chr13 51806770 51808090 -50065079 + L1PA11 LINE L1 4799 6152 -22 2137 105 37 0 chr13 51809051 51809346 -50063823 - AluSx SINE Alu -6 306 1 25 31 0 0 chr13 51809905 51809937 -50063232 + AT_rich Low_complexity Low_complexity 1 32 0 484 287 44 0 chr13 51810187 51810323 -50062846 + L2 LINE L2 3172 3313 0 22 0 0 0 chr13 51810641 51810663 -50062506 + AT_rich Low_complexity Low_complexity 1 22 0 1711 143 42 7 chr13 51811581 51811888 -50061281 - L1MA8 LINE L1 -136 6155 5838 647 124 54 0 chr13 51811888 51812012 -50061157 + L1MA8 LINE L1 6146 6281 -10 703 206 35 59 chr13 51812020 51812190 -50060979 + FRAM SINE Alu 1 166 0 226 320 61 36 chr13 51814491 51814621 -50058548 + HAL1b LINE L1 81 206 -1142 1731 166 17 10 chr13 51814621 51814916 -50058253 + AluSx SINE Alu 1 297 -15 226 320 61 36 chr13 51814916 51815063 -50058106 + HAL1b LINE L1 206 365 -983 1892 153 48 0 chr13 51815098 51815411 -50057758 - MER7A DNA MER2_type -18 328 3 268 203 14 29 chr13 51815439 51815508 -50057661 + HAL1b LINE L1 383 450 -898 2278 104 3 0 chr13 51815508 51815816 -50057353 + AluSg SINE Alu 1 309 -1 2005 233 32 68 chr13 51816232 51817014 -50056155 + L1MC5 LINE L1 6732 7485 -476 456 150 280 0 chr13 51817054 51817154 -50056015 + FLAM_A SINE Alu 2 129 -4 1893 153 7 0 chr13 51817157 51817458 -50055711 + AluSx SINE Alu 1 303 -9 249 256 81 23 chr13 51817777 51817863 -50055306 + L2 LINE L2 3223 3313 0 186 332 130 40 chr13 51818209 51818418 -50054751 + L2 LINE L2 332 573 -2741 2169 116 17 0 chr13 51818418 51818720 -50054449 - AluSx SINE Alu -5 307 1 186 332 130 40 chr13 51818720 51818787 -50054382 + L2 LINE L2 573 633 -2681 538 318 157 49 chr13 51819178 51819230 -50053939 + L2 LINE L2 1301 1346 -1926 2254 89 13 29 chr13 51819230 51819546 -50053623 - AluSx SINE Alu -1 311 1 538 318 157 49 chr13 51819546 51820701 -50052468 + L2 LINE L2 1346 2375 -897 2276 147 18 61 chr13 51820701 51821086 -50052083 + MSTB LTR MaLR 1 401 -25 1904 139 17 26 chr13 51821086 51821223 -50051946 + AluJo SINE Alu 1 138 -174 2333 93 0 0 chr13 51821223 51821513 -50051656 + AluSc SINE Alu 1 290 -19 1904 139 17 26 chr13 51821513 51821677 -50051492 + AluJo SINE Alu 138 299 -13 2209 122 0 0 chr13 51821684 51821987 -50051182 + AluSx SINE Alu 1 303 -9 2276 147 18 61 chr13 51821987 51822036 -50051133 + MSTB LTR MaLR 407 424 -2 538 318 157 49 chr13 51822036 51822586 -50050583 + L2 LINE L2 2375 3266 -6 593 195 81 109 chr13 51822854 51822913 -50050256 + MLT1J LTR MaLR 5 64 -447 2262 107 0 0 chr13 51822913 51823212 -50049957 - AluSx SINE Alu -13 299 1 593 195 81 109 chr13 51823212 51823589 -50049580 + MLT1J LTR MaLR 64 500 -11 611 326 65 32 chr13 51823843 51824122 -50049047 - HERV16 LTR ERVL -4316 680 393 1788 173 0 23 chr13 51824154 51824455 -50048714 + AluJb SINE Alu 5 298 -14 184 345 0 0 chr13 51824529 51824587 -50048582 - MIR SINE MIR 0 262 205 2268 94 0 3 chr13 51824588 51824886 -50048283 - AluSx SINE Alu -15 297 1 527 90 26 0 chr13 51825235 51825313 -50047856 - MADE1 DNA Mariner 0 80 1 283 233 19 0 chr13 51828747 51828850 -50044319 + (TA)n Simple_repeat Simple_repeat 2 106 0 1714 180 52 0 chr13 51828858 51829185 -50043984 - MER7A DNA MER2_type -4 342 1 2406 200 54 2 chr13 51829380 51829880 -50043289 + L1PBa LINE L1 689 1214 -5649 21 82 0 0 chr13 51830371 51830420 -50042749 + AT_rich Low_complexity Low_complexity 1 49 0 1861 157 0 26 chr13 51830753 51831059 -50042110 + AluSx SINE Alu 1 298 -14 884 215 66 0 chr13 51831072 51831300 -50041869 - L1M4 LINE L1 -1500 4646 4404 2368 67 0 0 chr13 51831323 51831657 -50041512 - AluY SINE Alu 0 334 1 247 267 322 0 chr13 51832258 51832348 -50040821 - L2 LINE L2 -3 3269 3151 25 31 0 0 chr13 51833090 51833122 -50040047 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 51834220 51834248 -50038921 + AT_rich Low_complexity Low_complexity 1 28 0 283 301 115 18 chr13 51834541 51834654 -50038515 - MIR SINE MIR -66 142 19 940 105 8 8 chr13 51834661 51834794 -50038375 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr13 51835393 51835423 -50037746 + AT_rich Low_complexity Low_complexity 1 30 0 271 239 0 37 chr13 51836866 51836975 -50036194 + CT-rich Low_complexity Low_complexity 4 108 0 484 269 94 29 chr13 51837974 51838145 -50035024 - L2 LINE L2 -4 3309 3128 2300 115 0 6 chr13 51838408 51838720 -50034449 - AluSq SINE Alu -3 310 1 1328 148 15 0 chr13 51838932 51839135 -50034034 - AluSq SINE Alu -10 303 98 1894 149 3 34 chr13 51839569 51839764 -50033405 - AluJb SINE Alu 0 332 150 2302 92 14 0 chr13 51839764 51840057 -50033112 - AluSx SINE Alu -14 298 2 1894 149 3 34 chr13 51840057 51840203 -50032966 - AluJb SINE Alu -182 150 1 1442 202 7 14 chr13 51840274 51840551 -50032618 - AluJb SINE Alu -37 275 1 2064 130 10 7 chr13 51840632 51840931 -50032238 + AluSq SINE Alu 1 300 -13 633 137 0 0 chr13 51841428 51841523 -50031646 - L1MC1 LINE L1 -17 6316 6222 189 132 0 0 chr13 51843872 51843910 -50029259 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr13 51844894 51844922 -50028247 + AT_rich Low_complexity Low_complexity 1 28 0 528 283 107 30 chr13 51846376 51846609 -50026560 + MIR SINE MIR 12 262 0 2403 85 7 0 chr13 51848417 51848723 -50024446 + AluSp SINE Alu 1 308 -5 366 319 71 24 chr13 51850563 51850732 -50022437 - MIR3 SINE MIR -11 197 21 1419 178 29 25 chr13 51851330 51851605 -50021564 + AluJo SINE Alu 7 282 -30 26 0 0 0 chr13 51851747 51851773 -50021396 + AT_rich Low_complexity Low_complexity 1 26 0 2131 106 0 14 chr13 51853152 51853444 -50019725 + AluSg SINE Alu 1 288 -22 2131 114 7 7 chr13 51854178 51854475 -50018694 + AluSc SINE Alu 1 297 -12 1801 147 52 0 chr13 51855006 51855292 -50017877 + AluJb SINE Alu 2 302 -10 267 120 53 27 chr13 51859899 51859974 -50013195 + GA-rich Low_complexity Low_complexity 6 82 0 280 393 56 0 chr13 51860335 51860424 -50012745 + L2 LINE L2 3142 3235 -37 299 248 195 9 chr13 51861024 51861137 -50012032 - MER20B DNA MER1_type -618 165 32 703 219 124 0 chr13 51861492 51861670 -50011499 + MIR SINE MIR 48 247 -15 202 247 96 41 chr13 51861681 51861754 -50011415 + L2 LINE L2 3188 3264 -8 242 29 29 0 chr13 51864037 51864072 -50009097 + (CA)n Simple_repeat Simple_repeat 2 37 0 989 169 35 0 chr13 51865636 51865808 -50007361 - AluYb8 SINE Alu -5 313 136 1711 183 7 14 chr13 51865828 51866118 -50007051 - AluJo SINE Alu -24 288 1 188 33 0 33 chr13 51866412 51866442 -50006727 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 2633 55 0 0 chr13 51866546 51866853 -50006316 - AluY SINE Alu -4 307 1 1843 139 4 4 chr13 51868707 51869006 -50004163 - AluSx SINE Alu 0 307 9 1770 171 9 19 chr13 51869538 51869853 -50003316 + AluSx SINE Alu 1 312 0 328 307 51 22 chr13 51869930 51870067 -50003102 - MIR SINE MIR -13 249 109 260 54 0 27 chr13 51870107 51870144 -50003025 - AluSc SINE Alu -165 134 99 500 246 44 0 chr13 51870263 51870377 -50002792 - AluSq/x SINE Alu -192 120 2 999 154 0 0 chr13 51870419 51870562 -50002607 - FRAM SINE Alu -34 142 1 1262 234 18 32 chr13 51870562 51870900 -50002269 - L1M4 LINE L1 -1768 4378 4046 2060 117 3 52 chr13 51870976 51871284 -50001885 - AluSx SINE Alu -19 293 1 2298 33 88 0 chr13 51871945 51872218 -50000951 - AluY SINE Alu -14 297 1 1322 146 219 12 chr13 51872603 51872849 -50000320 + AluJo SINE Alu 1 297 -5 1044 121 221 11 chr13 51873365 51873555 -49999614 - MER30 DNA MER1_type 0 230 1 269 326 92 0 chr13 51873621 51873719 -49999450 + L2 LINE L2 3157 3263 -9 855 68 8 17 chr13 51874027 51874144 -49999025 - AluSg/x SINE Alu -15 294 179 636 163 36 51 chr13 51874433 51874629 -49998540 + AluSq SINE Alu 121 313 0 1670 59 0 5 chr13 51875177 51875381 -49997788 - AluSq SINE Alu -110 203 1 216 0 0 0 chr13 51877030 51877054 -49996115 + (A)n Simple_repeat Simple_repeat 1 24 0 320 237 72 10 chr13 51877298 51877395 -49995774 - MIR3 SINE MIR -1 207 105 1494 196 14 4 chr13 51877968 51878244 -49994925 + AluJb SINE Alu 1 279 -33 373 299 85 24 chr13 51878269 51878433 -49994736 + MIR SINE MIR 56 229 -33 22 35 0 0 chr13 51878816 51878845 -49994324 + AT_rich Low_complexity Low_complexity 1 29 0 366 279 137 37 chr13 51879878 51879932 -49993237 + MIR SINE MIR 54 101 -161 2252 95 10 13 chr13 51879932 51880237 -49992932 + AluSx SINE Alu 1 304 -8 366 279 137 37 chr13 51880237 51880372 -49992797 + MIR SINE MIR 101 262 0 2282 102 0 13 chr13 51880432 51880736 -49992433 + AluSc SINE Alu 1 300 -9 180 176 0 0 chr13 51880747 51880781 -49992388 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr13 51880947 51881233 -49991936 + AluY SINE Alu 1 287 -24 21 36 0 0 chr13 51881233 51881261 -49991908 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr13 51881289 51881336 -49991833 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr13 51881655 51881692 -49991477 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr13 51881882 51882005 -49991164 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr13 51882044 51882066 -49991103 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr13 51882074 51882367 -49990802 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr13 51882483 51882607 -49990562 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr13 51882607 51882931 -49990238 - HSMAR1 DNA Mariner -2 1285 958 182 136 23 0 chr13 51885209 51885253 -49987916 + (CA)n Simple_repeat Simple_repeat 1 45 0 2354 98 0 0 chr13 51886818 51887115 -49986054 + AluSx SINE Alu 1 297 -15 1219 185 19 9 chr13 51887814 51888030 -49985139 - MER20 DNA MER1_type 0 219 2 2232 53 0 28 chr13 51890180 51890462 -49982707 + AluY SINE Alu 29 302 -9 30 27 0 0 chr13 51890573 51890610 -49982559 + AT_rich Low_complexity Low_complexity 1 37 0 2411 63 0 20 chr13 51890615 51890916 -49982253 + AluY SINE Alu 1 295 -16 404 176 162 29 chr13 51891469 51891605 -49981564 - L1MC5 LINE L1 -48 7913 7760 13405 36 20 1 chr13 51891766 51893537 -49979632 + L1P2 LINE L1 3774 5594 -561 709 189 40 27 chr13 51893728 51893876 -49979293 - AluJb SINE Alu -161 151 2 1831 167 44 22 chr13 51893877 51894237 -49978932 - L1MA9 LINE L1 -163 6149 5782 508 91 0 80 chr13 51894327 51894415 -49978754 - L1MA9 LINE L1 -849 5463 5383 718 112 37 67 chr13 51894415 51894549 -49978620 - L1M2 LINE L1 -518 5794 5665 1236 240 124 20 chr13 51894565 51895056 -49978113 - L1M1 LINE L1 -3924 3641 3100 2796 195 75 13 chr13 51895058 51895891 -49977278 - L1MC2 LINE L1 -513 5831 4921 333 0 0 0 chr13 51895891 51895928 -49977241 + (CA)n Simple_repeat Simple_repeat 2 38 0 2796 195 75 13 chr13 51895928 51896148 -49977021 - L1MC2 LINE L1 -1423 4921 4716 2020 102 0 0 chr13 51896360 51896614 -49976555 - AluSq SINE Alu -59 254 1 946 178 38 0 chr13 51896907 51897064 -49976105 + AluJb SINE Alu 137 299 -13 1086 148 67 94 chr13 51898567 51898694 -49974475 + MER58A DNA MER1_type 8 128 -2292 2172 118 20 0 chr13 51898694 51898999 -49974170 - AluSx SINE Alu -1 311 1 1086 148 67 94 chr13 51898999 51899094 -49974075 + MER58A DNA MER1_type 128 224 0 488 286 170 61 chr13 51899096 51899554 -49973615 + L2 LINE L2 2804 3311 -2 40 0 0 0 chr13 51900397 51900437 -49972732 + AT_rich Low_complexity Low_complexity 1 40 0 234 0 0 0 chr13 51900497 51900523 -49972646 + (T)n Simple_repeat Simple_repeat 1 26 0 2488 61 0 0 chr13 51900545 51900842 -49972327 + AluY SINE Alu 5 301 -10 2020 133 3 3 chr13 51901030 51901323 -49971846 - AluSc SINE Alu -12 297 5 21 36 0 0 chr13 51901417 51901445 -49971724 + AT_rich Low_complexity Low_complexity 1 28 0 1014 146 12 12 chr13 51902241 51902405 -49970764 + AluJb SINE Alu 136 299 -13 711 131 71 89 chr13 51902408 51902576 -49970593 + L1MA9 LINE L1 6145 6309 -3 3182 111 21 38 chr13 51902584 51903078 -49970091 + L1MC1 LINE L1 5818 6304 -29 2122 109 10 33 chr13 51903078 51903381 -49969788 + AluSx SINE Alu 5 300 -12 3182 111 21 38 chr13 51903381 51903408 -49969761 + L1MC1 LINE L1 6304 6330 -3 185 315 98 11 chr13 51953631 51953723 -49919446 - MIR SINE MIR -109 153 54 183 319 97 14 chr13 51953733 51953805 -49919364 - L2 LINE L2 -9 3304 3227 1491 144 4 0 chr13 51954166 51954441 -49918728 - L1P4 LINE L1 -663 5502 5227 1168 184 25 103 chr13 51954550 51954871 -49918298 - MER67D LTR ERV1 -203 311 16 1430 170 129 19 chr13 51955699 51956017 -49917152 - MER93b LTR ERV1 0 373 21 3845 153 25 32 chr13 51956041 51956768 -49916401 - MER50 LTR ERV1 -12 722 1 267 31 0 0 chr13 51958868 51958900 -49914269 + (TA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 51959140 51959163 -49914006 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr13 51959412 51959452 -49913717 + AT_rich Low_complexity Low_complexity 1 40 0 1269 134 25 0 chr13 51959730 51959968 -49913201 - L1MA7 LINE L1 0 6291 6048 2130 173 36 25 chr13 51960148 51960587 -49912582 + MER65A LTR ERV1 2 445 0 336 317 10 0 chr13 51961980 51962084 -49911085 - MIR3 SINE MIR -5 203 99 2268 212 14 63 chr13 51962150 51962717 -49910452 - MER87 LTR ERV1 0 541 3 2022 124 0 7 chr13 51964330 51964629 -49908540 + AluSc SINE Alu 1 297 -12 396 265 21 79 chr13 51964746 51964935 -49908234 - MLT2F LTR ERVL -46 617 440 385 316 68 17 chr13 51965014 51965191 -49907978 - MER63A DNA MER1_type -13 197 12 * 412 285 23 15 chr13 51965184 51965314 -49907855 - MLT2E LTR ERVL -497 131 1 243 206 0 96 chr13 51965628 51965701 -49907468 + MLT1H LTR MaLR 96 161 -388 * 249 139 0 0 chr13 51965671 51965707 -49907462 + MLT1I LTR MaLR 100 135 -274 1243 270 69 7 chr13 51966467 51966885 -49906284 - MLT1C LTR MaLR 0 467 24 1565 209 57 89 chr13 51966908 51967348 -49905821 - MLT1C-int LTR MaLR 0 1371 946 596 275 90 70 chr13 51967355 51967888 -49905281 - MLT1G1 LTR MaLR -21 521 22 630 293 111 59 chr13 51968146 51968703 -49904466 - MLT1G1 LTR MaLR 0 595 10 576 301 37 40 chr13 51968771 51969043 -49904126 + MLT1J1 LTR MaLR 36 306 -140 306 271 52 0 chr13 51969055 51969151 -49904018 + MLT1E1 LTR MaLR 77 177 -477 22 0 0 0 chr13 51969287 51969309 -49903860 + AT_rich Low_complexity Low_complexity 1 22 0 2489 56 0 0 chr13 51969639 51969942 -49903227 + AluY SINE Alu 1 303 -8 1912 107 0 77 chr13 51971020 51971357 -49901812 + AluSx SINE Alu 1 311 -1 498 328 55 15 chr13 51971451 51971777 -49901392 - MLT1H1 LTR MaLR -196 359 14 360 0 0 0 chr13 51972152 51972192 -49900977 + (TTA)n Simple_repeat Simple_repeat 1 40 0 259 296 9 26 chr13 51973092 51973207 -49899962 - MLT1-int LTR MaLR -1250 121 9 416 266 126 19 chr13 51973253 51973498 -49899671 - MLT1H1 LTR MaLR -196 359 79 292 257 68 14 chr13 51975642 51975716 -49897453 + L2 LINE L2 3191 3268 -45 575 194 24 24 chr13 51976439 51976563 -49896606 - FLAM_A SINE Alu -13 129 6 24 0 0 0 chr13 51976680 51976704 -49896465 + AT_rich Low_complexity Low_complexity 1 24 0 404 281 106 43 chr13 51977937 51978172 -49894997 + MIR SINE MIR 13 262 0 305 274 21 32 chr13 51979493 51979588 -49893581 - L1MD3 LINE L1 0 7995 7902 614 154 32 58 chr13 51979592 51979748 -49893421 + L1MC4a LINE L1 7152 7303 -505 231 170 0 0 chr13 51979997 51980044 -49893125 + T-rich Low_complexity Low_complexity 1 47 0 253 220 0 17 chr13 51980491 51980550 -49892619 + GA-rich Low_complexity Low_complexity 2 59 0 212 337 31 31 chr13 51981310 51981408 -49891761 - MER5A DNA MER1_type -45 144 47 472 261 163 33 chr13 51982495 51982883 -49890286 + MLT1G3 LTR MaLR 10 418 -112 207 0 0 0 chr13 51982901 51982924 -49890245 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 510 262 74 0 chr13 51982963 51983112 -49890057 + MLT1G3 LTR MaLR 351 510 -20 348 343 41 24 chr13 51983390 51983559 -49889610 - MIR SINE MIR -84 178 7 270 321 98 36 chr13 51983574 51983686 -49889483 - MIR3 SINE MIR -87 121 3 1977 101 3 11 chr13 51985018 51985304 -49887865 - AluSg SINE Alu -26 284 1 1008 185 95 24 chr13 51985473 51985684 -49887485 + MER46A DNA MER2_type 11 236 0 22 80 0 0 chr13 51986417 51986467 -49886702 + AT_rich Low_complexity Low_complexity 1 50 0 201 162 0 0 chr13 51987864 51987901 -49885268 + A-rich Low_complexity Low_complexity 1 37 0 203 319 85 11 chr13 51988020 51988091 -49885078 - L2 LINE L2 0 3313 3232 2458 121 5 16 chr13 51988091 51988470 -49884699 + THE1C LTR MaLR 1 375 0 203 319 85 11 chr13 51988470 51988492 -49884677 - L2 LINE L2 -81 3232 3213 925 138 61 33 chr13 51988602 51988783 -49884386 - L1PA8 LINE L1 -1 6171 5986 2390 160 160 42 chr13 51988892 51989441 -49883728 - LTR18B LTR ERVL 0 614 1 214 333 0 0 chr13 51989441 51989498 -49883671 - L2 LINE L2 -12 3260 3204 344 364 76 34 chr13 51989850 51990259 -49882910 - L2 LINE L2 -527 2787 2362 1660 238 95 42 chr13 51990294 51990503 -49882666 - MLT1E3 LTR MaLR 0 624 427 1355 220 115 41 chr13 51990503 51990971 -49882198 + MLT1D LTR MaLR 1 503 -2 1660 238 95 42 chr13 51990971 51991353 -49881816 - MLT1E3 LTR MaLR -197 427 2 291 338 5 0 chr13 51991397 51991507 -49881662 + MER5A DNA MER1_type 29 140 -38 1845 96 58 58 chr13 51992141 51992453 -49880716 + AluSx SINE Alu 1 312 0 183 80 0 0 chr13 51992553 51992578 -49880591 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 362 322 117 18 chr13 51993267 51993438 -49879731 - LTR16A LTR ERVL 0 450 263 310 48 24 0 chr13 51993444 51993486 -49879683 - L1P2 LINE L1 -468 5686 5644 2515 60 9 3 chr13 51993486 51993818 -49879351 + L1PA4 LINE L1 5819 6154 -1 591 76 109 11 chr13 51994837 51994929 -49878240 + MER85 DNA T2_type 1 101 -38 213 254 18 0 chr13 51995451 51995506 -49877663 - MIR3 SINE MIR -3 205 150 4705 208 44 60 chr13 51995929 51996389 -49876780 - L1MB3 LINE L1 -9 6410 5944 2072 190 54 0 chr13 51996389 51996779 -49876390 - LTR57 LTR ERVL 0 411 1 4705 208 44 60 chr13 51996779 51997318 -49875851 - L1MB3 LINE L1 -475 5944 5397 236 133 0 0 chr13 51997318 51997363 -49875806 - LTR66 LTR ERVL -171 439 395 4705 208 44 60 chr13 51997363 51997763 -49875406 - L1MB3 LINE L1 -1022 5397 4992 2152 115 3 0 chr13 51997763 51998067 -49875102 - AluSq SINE Alu -7 306 2 4705 208 44 60 chr13 51998067 51999012 -49874157 - L1MB3 LINE L1 -1427 4992 4070 1989 224 38 24 chr13 51999014 51999464 -49873705 + MER70A LTR ERVL 3 458 -14 6542 216 35 25 chr13 51999465 52002398 -49870771 - L1MB3 LINE L1 -2311 4071 1097 2514 221 31 26 chr13 52002406 52002448 -49870721 - MLT2B3 LTR ERVL -12 542 502 965 122 11 17 chr13 52002448 52002629 -49870540 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2514 221 31 26 chr13 52002629 52003125 -49870044 - MLT2B3 LTR ERVL -52 502 1 4521 223 63 11 chr13 52003125 52004169 -49869000 - L1MB3 LINE L1 -5283 1101 4 299 264 36 18 chr13 52006461 52006571 -49866598 + MER103 DNA DNA 26 137 -29 214 191 0 0 chr13 52006601 52006643 -49866526 + T-rich Low_complexity Low_complexity 1 42 0 1183 190 24 118 chr13 52007187 52007663 -49865506 + MER52A LTR ERV1 660 1232 -523 395 245 66 22 chr13 52007767 52007960 -49865209 + LTR28 LTR ERV1 528 716 -304 * 2765 179 2 87 chr13 52007936 52008532 -49864637 + MER52A LTR ERV1 1209 1753 -2 1573 228 42 23 chr13 52011434 52011820 -49861349 - MSTD LTR MaLR -3 393 1 324 0 0 0 chr13 52012154 52012190 -49860979 + (CA)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr13 52013341 52013361 -49859808 + (T)n Simple_repeat Simple_repeat 1 20 0 271 192 41 14 chr13 52014060 52014133 -49859036 - L1MC3 LINE L1 -1594 6191 6117 22 35 0 0 chr13 52014133 52014162 -49859007 + AT_rich Low_complexity Low_complexity 1 29 0 226 347 32 16 chr13 52014817 52014941 -49858228 - MLT1I LTR MaLR -237 172 47 21 57 0 0 chr13 52015135 52015170 -49857999 + AT_rich Low_complexity Low_complexity 1 35 0 903 255 50 103 chr13 52015599 52016344 -49856825 + MER67B LTR ERV1 1 660 -1 241 138 100 38 chr13 52016546 52016626 -49856543 + AluS SINE Alu 1 85 -218 717 272 77 47 chr13 52016840 52017286 -49855883 + L2 LINE L2 2529 3276 -37 191 59 0 59 chr13 52017286 52017320 -49855849 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 27 0 0 0 chr13 52018985 52019012 -49854157 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr13 52019541 52019576 -49853593 + AT_rich Low_complexity Low_complexity 1 35 0 2008 115 31 6 chr13 52019952 52020273 -49852896 - L1PB1 LINE L1 -3 6148 5820 1052 221 66 69 chr13 52020444 52020594 -49852575 + AluJb SINE Alu 1 152 -150 2144 99 15 0 chr13 52020594 52020890 -49852279 + AluSg SINE Alu 3 302 0 1052 221 66 69 chr13 52020890 52021027 -49852142 + AluJb SINE Alu 152 288 -14 655 296 16 11 chr13 52021300 52021486 -49851683 + MIR SINE MIR 1 187 -75 1874 137 57 33 chr13 52022072 52022438 -49850731 - THE1C LTR MaLR 0 375 1 253 331 59 44 chr13 52023604 52023740 -49849429 + L2 LINE L2 2952 3089 -183 816 353 42 42 chr13 52023911 52024359 -49848810 - LTR16A LTR ERVL -2 448 1 475 339 6 11 chr13 52024507 52024690 -49848479 + LTR16A LTR ERVL 236 417 -33 364 314 8 16 chr13 52025510 52025634 -49847535 - L2 LINE L2 -8 3305 3183 2379 173 64 0 chr13 52025828 52026251 -49846918 - LTR47A LTR ERVL -2 450 1 892 255 94 22 chr13 52027314 52027735 -49845434 - MLT1J LTR MaLR -4 507 5 304 314 16 40 chr13 52028107 52028231 -49844938 - L2 LINE L2 -2 3311 3191 22 0 0 0 chr13 52030069 52030091 -49843078 + AT_rich Low_complexity Low_complexity 1 22 0 423 287 60 27 chr13 52030491 52030641 -49842528 + MIR SINE MIR 63 217 -45 608 212 0 0 chr13 52031340 52031453 -49841716 - Tigger7 DNA MER2_type 0 2487 2375 901 260 59 0 chr13 52031465 52031669 -49841500 - Tigger7 DNA MER2_type -2269 218 3 33 0 0 0 chr13 52031689 52031722 -49841447 + AT_rich Low_complexity Low_complexity 1 33 0 1942 148 0 10 chr13 52031722 52032032 -49841137 - AluSq SINE Alu -1 312 6 12331 159 56 21 chr13 52032075 52033182 -49839987 - Tigger1 DNA MER2_type -1 2417 1350 3127 185 20 8 chr13 52033182 52033778 -49839391 - LTR26 LTR ERV1 0 603 1 12331 159 56 21 chr13 52033778 52034707 -49838462 - Tigger1 DNA MER2_type -1068 1350 455 2016 123 106 6 chr13 52034707 52035048 -49838121 - THE1C LTR MaLR 0 375 1 9604 125 41 38 chr13 52035048 52036622 -49836547 - THE1C-int LTR MaLR 0 1580 1 2695 109 0 5 chr13 52036622 52036999 -49836170 - THE1C LTR MaLR 0 375 1 12331 159 56 21 chr13 52036999 52037295 -49835874 - Tigger1 DNA MER2_type -1962 456 1 1140 215 71 13 chr13 52037659 52037970 -49835199 - L1MB7 LINE L1 -440 5738 5410 * 1495 232 23 43 chr13 52037964 52038404 -49834765 + L1MB7 LINE L1 5741 6171 -13 201 310 60 69 chr13 52038538 52038654 -49834515 - L2 LINE L2 0 3313 3199 713 360 66 17 chr13 52039721 52040143 -49833026 + L1M3c LINE L1 1366 1808 -5688 531 163 0 0 chr13 52040775 52040861 -49832308 - THE1B LTR MaLR 0 364 279 5816 131 14 27 chr13 52040861 52041886 -49831283 - pTR5 LTR ERV1 -685 1753 743 1863 166 34 19 chr13 52041886 52042211 -49830958 - THE1B LTR MaLR -34 330 1 1927 263 62 12 chr13 52042835 52042850 -49830319 + L1M3c LINE L1 2290 2303 -5263 1380 249 11 0 chr13 52042850 52043131 -49830038 - AluJb SINE Alu -28 284 1 1927 263 62 12 chr13 52043131 52044035 -49829134 + L1M3c LINE L1 2303 3242 -4324 249 254 0 64 chr13 52044022 52044132 -49829037 + L1M3c LINE L1 3478 3580 -3985 * 6517 205 104 9 chr13 52044132 52045500 -49827669 + L1M1 LINE L1 14 1511 -6054 7857 173 21 4 chr13 52045502 52047593 -49825576 + L1M1 LINE L1 5109 7238 -485 531 148 0 0 chr13 52047593 52047674 -49825495 - PABL_A LTR ERV1 -578 82 2 2261 154 75 10 chr13 52047674 52048167 -49825002 + L1MA9 LINE L1 5783 6307 -5 23 0 0 0 chr13 52048356 52048379 -49824790 + AT_rich Low_complexity Low_complexity 1 23 0 2269 98 14 0 chr13 52048570 52048867 -49824302 + AluSg SINE Alu 1 301 -9 974 81 0 0 chr13 52050728 52050851 -49822318 + AluY SINE Alu 175 297 -14 201 162 0 0 chr13 52050897 52050934 -49822235 + (TA)n Simple_repeat Simple_repeat 2 38 0 1534 265 39 54 chr13 52051026 52051509 -49821660 - LTR40a LTR ERVL 0 519 44 905 295 37 0 chr13 52051521 52051789 -49821380 - HERVL40 LTR ERVL 0 5530 5253 615 277 105 43 chr13 52052708 52053066 -49820103 - HERVL40 LTR ERVL -691 4565 2070 330 235 113 144 chr13 52053151 52053560 -49819609 + HERVL40 LTR ERVL 85 480 -5050 863 275 106 15 chr13 52053658 52053989 -49819180 + HERVL40 LTR ERVL 2968 3328 -2202 581 274 12 12 chr13 52054002 52054170 -49818999 + HERVL40 LTR ERVL 3439 3606 -1924 336 223 27 101 chr13 52054181 52054329 -49818840 - LTR40b LTR ERVL -289 173 37 1506 312 55 15 chr13 52054332 52054948 -49818221 + HERVL40 LTR ERVL 3628 4268 -1262 265 246 29 29 chr13 52055126 52055264 -49817905 + (TA)n Simple_repeat Simple_repeat 2 139 0 1959 183 15 0 chr13 52055265 52055598 -49817571 + MER7A DNA MER2_type 1 336 -10 217 319 85 21 chr13 52055982 52056076 -49817093 + MIR3 SINE MIR 78 177 -31 319 310 23 8 chr13 52056504 52056633 -49816536 + LTR33 LTR ERVL 391 521 0 715 244 11 17 chr13 52057220 52057400 -49815769 - MIR SINE MIR -8 254 76 562 295 157 71 chr13 52058685 52059092 -49814077 - L2 LINE L2 -48 3265 2824 27 49 0 0 chr13 52059295 52059336 -49813833 + AT_rich Low_complexity Low_complexity 1 41 0 47 53 0 0 chr13 52060373 52060448 -49812721 + AT_rich Low_complexity Low_complexity 1 75 0 1787 182 0 3 chr13 52060915 52061228 -49811941 + AluSx SINE Alu 1 312 0 182 327 0 0 chr13 52061860 52061912 -49811257 - MIR SINE MIR -47 215 164 2982 213 171 10 chr13 52061917 52062751 -49810418 - LTR28 LTR ERV1 0 1020 1 28 48 0 0 chr13 52062928 52062970 -49810199 + AT_rich Low_complexity Low_complexity 1 42 0 1021 135 6 56 chr13 52062996 52063174 -49809995 - AluSx SINE Alu -143 169 1 2265 120 0 0 chr13 52063186 52063495 -49809674 - AluSc SINE Alu 0 309 1 470 276 74 80 chr13 52063902 52064214 -49808955 - LTR68 LTR ERV1 -430 310 1 1976 125 133 18 chr13 52064806 52065190 -49807979 - MSTA LTR MaLR 0 428 1 2071 127 3 3 chr13 52065454 52065761 -49807408 - AluSq SINE Alu -2 311 5 180 97 0 0 chr13 52065770 52065801 -49807368 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 201 74 0 0 chr13 52065825 52065852 -49807317 + (T)n Simple_repeat Simple_repeat 1 27 0 219 69 0 0 chr13 52066917 52066946 -49806223 + (TA)n Simple_repeat Simple_repeat 2 30 0 260 362 78 35 chr13 52066983 52067124 -49806045 - MIR SINE MIR -108 154 8 556 260 66 11 chr13 52068738 52068919 -49804250 + MIR SINE MIR 37 227 -35 917 349 99 11 chr13 52068977 52069611 -49803558 + L2 LINE L2 2205 2894 -420 657 241 28 106 chr13 52069657 52069939 -49803230 - MIR SINE MIR 0 262 3 23 0 0 0 chr13 52070004 52070027 -49803142 + AT_rich Low_complexity Low_complexity 1 23 0 1011 246 71 28 chr13 52070043 52070466 -49802703 - L1M4 LINE L1 -1439 4707 4267 296 127 18 0 chr13 52070494 52070549 -49802620 + (TATG)n Simple_repeat Simple_repeat 2 57 0 432 284 84 53 chr13 52070754 52071007 -49802162 - L1M4 LINE L1 -2260 3886 3617 1907 119 19 26 chr13 52071007 52071317 -49801852 + AluSq SINE Alu 1 308 -5 432 284 84 53 chr13 52071317 52071418 -49801751 - L1M4 LINE L1 -2529 3617 3521 610 264 123 14 chr13 52071421 52071788 -49801381 - L1M4 LINE L1 -2995 3151 2745 23 33 0 0 chr13 52072257 52072287 -49800882 + AT_rich Low_complexity Low_complexity 1 30 0 203 159 0 91 chr13 52072716 52072760 -49800409 - L2 LINE L2 -3 3310 3271 328 302 27 40 chr13 52073442 52073591 -49799578 + MER5B DNA MER1_type 1 147 -31 23 0 0 0 chr13 52073610 52073633 -49799536 + AT_rich Low_complexity Low_complexity 1 23 0 185 196 20 0 chr13 52073737 52073788 -49799381 + (TA)n Simple_repeat Simple_repeat 1 52 0 28 48 0 0 chr13 52074642 52074684 -49798485 + AT_rich Low_complexity Low_complexity 1 42 0 210 37 0 0 chr13 52074972 52074999 -49798170 + (CA)n Simple_repeat Simple_repeat 2 28 0 252 305 71 52 chr13 52075522 52075732 -49797437 + L1M4b LINE L1 29 242 -6617 275 271 129 19 chr13 52076026 52076181 -49796988 + L1M4b LINE L1 1030 1201 -5654 934 218 54 124 chr13 52076350 52077130 -49796039 + L1M4b LINE L1 1324 2022 -4833 1329 241 66 23 chr13 52077201 52077595 -49795574 + L1MB8 LINE L1 5490 5900 -278 439 63 0 0 chr13 52077595 52077658 -49795511 - AluJ/FLAM SINE Alu -249 63 1 190 319 101 58 chr13 52077799 52077937 -49795232 + MIR3 SINE MIR 54 197 -11 29 60 0 0 chr13 52078085 52078135 -49795034 + AT_rich Low_complexity Low_complexity 1 50 0 2265 92 0 3 chr13 52078979 52079284 -49793885 - AluY SINE Alu -7 304 1 45 75 0 0 chr13 52079971 52080065 -49793104 + AT_rich Low_complexity Low_complexity 1 94 0 21 82 0 0 chr13 52080224 52080273 -49792896 + AT_rich Low_complexity Low_complexity 1 49 0 1657 191 0 10 chr13 52080445 52080748 -49792421 + AluJo SINE Alu 3 302 -10 231 254 34 17 chr13 52080753 52080812 -49792357 + MIR SINE MIR 203 262 0 507 299 65 0 chr13 52081711 52081895 -49791274 + MIR SINE MIR 66 261 -1 387 283 95 3 chr13 52084347 52084630 -49788539 + L1MEc LINE L1 859 1167 -5229 203 308 0 0 chr13 52084688 52084753 -49788416 + GA-rich Low_complexity Low_complexity 3 67 0 835 264 52 49 chr13 52084872 52085444 -49787725 + L1MEc LINE L1 1548 2121 -4275 273 214 67 0 chr13 52085465 52085554 -49787615 + L1MEc LINE L1 2304 2398 -3817 * 643 257 83 23 chr13 52085552 52085770 -49787399 + L1ME2 LINE L1 1 231 -6628 1352 208 136 16 chr13 52086161 52086679 -49786490 - L1M4c LINE L1 -5095 1447 896 278 176 44 0 chr13 52086723 52086791 -49786378 - L1M4b LINE L1 -5252 1607 1537 485 255 185 29 chr13 52086834 52087148 -49786021 + L1ME2 LINE L1 1749 2111 -4848 2497 282 77 33 chr13 52087171 52088902 -49784267 + L1ME2 LINE L1 4070 5723 -1252 2237 128 123 5 chr13 52088902 52089284 -49783885 - MSTA LTR MaLR 0 428 2 8285 186 25 12 chr13 52089285 52090916 -49782253 - MSTA-int LTR MaLR 0 1651 1 2017 153 119 8 chr13 52090916 52091301 -49781868 - MSTA LTR MaLR 0 428 1 2497 282 77 33 chr13 52091301 52092342 -49780827 + L1ME2 LINE L1 5722 6967 -8 324 284 155 13 chr13 52092455 52092610 -49780559 - MER5B DNA MER1_type 0 178 2 42 20 0 0 chr13 52092664 52092713 -49780456 + AT_rich Low_complexity Low_complexity 1 49 0 528 298 54 0 chr13 52094035 52094203 -49778966 - MER45A DNA AcHobo -1 177 1 1590 195 0 20 chr13 52094295 52094593 -49778576 + AluJo SINE Alu 1 292 -20 225 324 90 9 chr13 52095052 52095163 -49778006 + MIR SINE MIR 28 147 -115 369 0 0 0 chr13 52095278 52095319 -49777850 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr13 52095968 52095989 -49777180 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 52096104 52096127 -49777042 + AT_rich Low_complexity Low_complexity 1 23 0 441 265 102 27 chr13 52096600 52096814 -49776355 - MLT1H1 LTR MaLR -288 267 80 184 277 0 0 chr13 52096891 52096938 -49776231 - L2 LINE L2 -16 3297 3251 694 211 40 0 chr13 52098937 52099112 -49774057 + MER53 DNA DNA 1 182 -7 1378 309 97 13 chr13 52099330 52099867 -49773302 + MLT1G LTR MaLR 7 588 -2 368 253 20 10 chr13 52100042 52100141 -49773028 - MER5A DNA MER1_type -80 109 10 348 273 0 0 chr13 52100521 52100587 -49772582 - MER30 DNA MER1_type -2 228 163 250 220 113 77 chr13 52100606 52100669 -49772500 - Looper DNA T2_type -1 1557 1498 195 42 0 0 chr13 52100669 52100693 -49772476 + (TA)n Simple_repeat Simple_repeat 2 25 0 250 220 113 77 chr13 52100693 52100797 -49772372 - Looper DNA T2_type -60 1498 1384 732 195 116 0 chr13 52100802 52100966 -49772203 - Looper DNA T2_type -599 959 777 673 207 28 0 chr13 52101002 52101147 -49772022 - Looper DNA T2_type -895 663 515 754 221 64 40 chr13 52101162 52101411 -49771758 - Looper DNA T2_type -1298 260 6 23 0 0 0 chr13 52101708 52101731 -49771438 + AT_rich Low_complexity Low_complexity 1 23 0 21 104 0 0 chr13 52101935 52102012 -49771157 + AT_rich Low_complexity Low_complexity 1 77 0 310 224 0 0 chr13 52102224 52102282 -49770887 - L2 LINE L2 0 3313 3256 395 286 112 12 chr13 52103901 52104062 -49769107 - MIR SINE MIR -4 258 82 222 224 143 61 chr13 52104313 52104411 -49768758 - MIR SINE MIR 0 262 157 3455 124 85 85 chr13 52104411 52105342 -49767827 + pTR5 LTR ERV1 751 2009 -429 226 219 52 62 chr13 52105342 52105438 -49767731 + MER51A LTR ERV1 465 559 -75 1554 82 0 9 chr13 52105447 52105667 -49767502 + pTR5 LTR ERV1 172 389 -2049 311 294 185 0 chr13 52105667 52105786 -49767383 - MIR SINE MIR -90 172 32 302 262 27 81 chr13 52105859 52106008 -49767161 + MER97a DNA MER1_type? 39 179 -715 310 203 31 0 chr13 52106589 52106653 -49766516 - L2 LINE L2 -5 3308 3243 1029 231 51 105 chr13 52106660 52107192 -49765977 - MLT1D LTR MaLR -2 503 1 764 197 12 9 chr13 52107430 52107722 -49765447 - MLT1A1 LTR MaLR -2 363 10 206 274 5 0 chr13 52107799 52107878 -49765291 - L2 LINE L2 -332 2940 2861 305 336 39 0 chr13 52108409 52108513 -49764656 - L2 LINE L2 -1 3271 3164 453 279 100 32 chr13 52109732 52109922 -49763247 + MIR SINE MIR 60 262 0 21 36 0 0 chr13 52110765 52110793 -49762376 + AT_rich Low_complexity Low_complexity 1 28 0 370 303 52 52 chr13 52111594 52111749 -49761420 - L2 LINE L2 -2 3270 3116 1883 118 20 106 chr13 52111917 52112314 -49760855 + THE1B LTR MaLR 2 364 0 11043 106 15 0 chr13 52112314 52113870 -49759299 + THE1B-int LTR MaLR 1 1580 0 1029 164 48 97 chr13 52113870 52114331 -49758838 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr13 52114944 52114968 -49758201 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 52115359 52115382 -49757787 + (TG)n Simple_repeat Simple_repeat 2 24 0 32 57 0 0 chr13 52115912 52115965 -49757204 + AT_rich Low_complexity Low_complexity 1 53 0 288 70 0 0 chr13 52117235 52117278 -49755891 + (CA)n Simple_repeat Simple_repeat 2 44 0 1424 176 0 0 chr13 52117344 52117565 -49755604 + AluJb SINE Alu 15 235 -77 21 36 0 0 chr13 52117586 52117614 -49755555 + AT_rich Low_complexity Low_complexity 1 28 0 212 309 0 49 chr13 52117842 52117923 -49755246 + MIR SINE MIR 91 149 -59 1044 289 136 25 chr13 52117953 52118431 -49754738 - MLT1H LTR MaLR -16 533 3 302 345 18 9 chr13 52118514 52118627 -49754542 - MIR SINE MIR -61 147 34 38 0 0 0 chr13 52118808 52118846 -49754323 + AT_rich Low_complexity Low_complexity 1 38 0 219 269 26 26 chr13 52119893 52119971 -49753198 + MER5A DNA MER1_type 88 165 -24 268 236 42 0 chr13 52122115 52122187 -49750982 + (TATG)n Simple_repeat Simple_repeat 1 75 0 244 317 35 62 chr13 52123241 52123386 -49749783 - L2 LINE L2 -549 2765 2625 196 340 46 59 chr13 52123405 52123558 -49749611 - L2 LINE L2 -847 2467 2317 413 322 20 7 chr13 52124159 52124308 -49748861 + LTR16A1 LTR ERVL 307 457 0 1929 210 35 79 chr13 52124505 52125085 -49748084 + MLT2B3 LTR ERVL 1 554 0 243 271 17 0 chr13 52125099 52125158 -49748011 + (TATG)n Simple_repeat Simple_repeat 3 62 0 646 302 30 37 chr13 52125178 52125446 -49747723 - MLT1K LTR MaLR 0 588 323 1198 271 106 61 chr13 52125459 52126364 -49746805 - HAL1 LINE L1 -976 1531 586 1581 264 51 21 chr13 52126472 52126998 -49746171 - MLT1F LTR MaLR 0 542 1 258 32 0 0 chr13 52127119 52127150 -49746019 + (CA)n Simple_repeat Simple_repeat 2 32 0 2104 235 49 16 chr13 52127570 52128119 -49745050 - L1MC3 LINE L1 -171 7614 7048 5772 159 56 30 chr13 52128132 52129301 -49743868 - Tigger3b DNA MER2_type -32 1199 1 206 240 20 0 chr13 52129301 52129351 -49743818 + (CATA)n Simple_repeat Simple_repeat 3 53 0 25 51 0 0 chr13 52129351 52129390 -49743779 + AT_rich Low_complexity Low_complexity 1 39 0 1742 266 26 0 chr13 52129406 52129868 -49743301 - L1MC3 LINE L1 -820 6965 6492 201 39 0 0 chr13 52129999 52130025 -49743144 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 351 331 38 6 chr13 52130837 52130997 -49742172 + MIR SINE MIR 92 256 -6 1892 98 42 25 chr13 52131315 52131601 -49741568 + AluSq SINE Alu 1 291 -22 299 295 137 39 chr13 52132876 52133161 -49740008 - MLT1H LTR MaLR -4 545 233 2470 195 111 35 chr13 52133425 52134046 -49739123 - L1MB1 LINE L1 -57 6132 5465 868 243 68 74 chr13 52134049 52134416 -49738753 - MLT1A1 LTR MaLR 0 365 1 2732 264 28 24 chr13 52134416 52134755 -49738414 - MLT1A1-int LTR MaLR 0 1735 1399 1937 130 0 17 chr13 52134755 52135047 -49738122 + AluSc SINE Alu 1 287 -22 2732 264 28 24 chr13 52135047 52135377 -49737792 - MLT1A1-int LTR MaLR -336 1399 1063 757 250 92 63 chr13 52135377 52135661 -49737508 - MLT1A1 LTR MaLR -70 295 4 2200 171 49 26 chr13 52135668 52136216 -49736953 - L1MB1 LINE L1 -743 5403 4901 2167 98 0 0 chr13 52136458 52136754 -49736415 - AluSc SINE Alu -13 296 1 22 35 0 0 chr13 52138168 52138197 -49734972 + AT_rich Low_complexity Low_complexity 1 29 0 298 186 14 0 chr13 52138682 52138752 -49734417 - L1MA8 LINE L1 -130 6161 6091 764 204 7 0 chr13 52138775 52138922 -49734247 - L1MA8 LINE L1 -174 6117 5970 368 343 75 0 chr13 52139166 52139300 -49733869 - MIR SINE MIR -93 169 26 1045 323 39 28 chr13 52139487 52139863 -49733306 + LTR16B LTR ERVL 24 407 -57 2413 122 11 3 chr13 52139863 52140224 -49732945 + THE1B LTR MaLR 1 364 0 1045 323 39 28 chr13 52140224 52140281 -49732888 + LTR16B LTR ERVL 407 462 -2 24 0 0 0 chr13 52140575 52140599 -49732570 + AT_rich Low_complexity Low_complexity 1 24 0 232 97 97 10 chr13 52141511 52141614 -49731555 + (TA)n Simple_repeat Simple_repeat 2 113 0 409 62 112 12 chr13 52141630 52141791 -49731378 + (TA)n Simple_repeat Simple_repeat 2 178 0 2027 101 10 27 chr13 52141792 52142089 -49731080 + AluSc SINE Alu 1 292 -17 225 94 0 0 chr13 52142092 52142124 -49731045 + (TA)n Simple_repeat Simple_repeat 1 32 0 1688 187 31 79 chr13 52142429 52142883 -49730286 + MSTB1 LTR MaLR 1 432 0 222 292 0 44 chr13 52143696 52143833 -49729336 + CT-rich Low_complexity Low_complexity 4 134 0 511 333 57 61 chr13 52144458 52144755 -49728414 - L2 LINE L2 -1 3271 2976 314 378 53 20 chr13 52144914 52145160 -49728009 - L2 LINE L2 -445 2869 2616 2131 90 7 10 chr13 52145603 52145892 -49727277 + AluSp SINE Alu 1 288 -25 414 0 0 0 chr13 52145901 52145947 -49727222 + (TAAAA)n Simple_repeat Simple_repeat 3 48 0 760 289 11 0 chr13 52146714 52146894 -49726275 + MIR SINE MIR 49 230 -32 218 250 8 16 chr13 52147579 52147710 -49725459 + CT-rich Low_complexity Low_complexity 1 129 0 670 230 13 51 chr13 52147729 52147905 -49725264 + MIR3 SINE MIR 18 187 -21 25 90 0 0 chr13 52148009 52148076 -49725093 + AT_rich Low_complexity Low_complexity 1 67 0 2291 70 0 29 chr13 52150329 52150643 -49722526 - AluY SINE Alu -6 305 1 23 33 0 0 chr13 52150816 52150846 -49722323 + AT_rich Low_complexity Low_complexity 1 30 0 338 235 59 0 chr13 52152654 52152739 -49720430 + LTR52 LTR ERVL 328 417 -4 25 0 0 0 chr13 52152890 52152915 -49720254 + AT_rich Low_complexity Low_complexity 1 25 0 563 368 24 4 chr13 52153073 52153323 -49719846 - MIR SINE MIR -2 260 6 3142 174 38 40 chr13 52154720 52155427 -49717742 + MER67C LTR ERV1 1 706 -4 1215 231 7 26 chr13 52156018 52156325 -49716844 - AluJo SINE Alu -1 301 1 2171 122 51 25 chr13 52157464 52157817 -49715352 - THE1B LTR MaLR -2 362 1 10836 115 2 29 chr13 52157822 52159441 -49713728 - THE1B-int LTR MaLR -5 1575 1 2201 118 51 25 chr13 52159441 52159796 -49713373 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr13 52159891 52159912 -49713257 + AT_rich Low_complexity Low_complexity 1 21 0 3904 154 25 68 chr13 52160013 52160051 -49713118 + L1PB4 LINE L1 5327 5365 -804 2348 89 0 3 chr13 52160051 52160354 -49712815 + AluSp SINE Alu 1 302 -11 3904 154 25 68 chr13 52160354 52161195 -49711974 + L1PB4 LINE L1 5365 6169 0 22 35 0 0 chr13 52161640 52161669 -49711500 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 52162167 52162196 -49710973 + AT_rich Low_complexity Low_complexity 1 29 0 258 0 0 67 chr13 52162306 52162351 -49710818 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 26 0 0 0 chr13 52162352 52162378 -49710791 + AT_rich Low_complexity Low_complexity 1 26 0 329 275 47 38 chr13 52165062 52165298 -49707871 - HAL1 LINE L1 -296 2211 1974 609 301 70 60 chr13 52165423 52166292 -49706877 - HAL1 LINE L1 -793 1714 674 2796 137 5 2 chr13 52166292 52166716 -49706453 - MER61B LTR ERV1 0 425 1 609 301 70 60 chr13 52166716 52166757 -49706412 - HAL1 LINE L1 -1833 674 635 567 277 31 0 chr13 52166821 52166951 -49706218 - MER45A DNA AcHobo -44 134 1 1029 139 0 0 chr13 52167159 52167332 -49705837 + (TA)n Simple_repeat Simple_repeat 2 174 0 697 143 9 0 chr13 52167332 52167437 -49705732 + Tigger3(Golem) DNA MER2_type 2923 3028 -1 295 311 30 43 chr13 52167475 52167639 -49705530 - HAL1 LINE L1 -2023 484 323 442 245 11 0 chr13 52167768 52167862 -49705307 + MER82 DNA MER2_type 1 95 -558 292 333 58 29 chr13 52167887 52168058 -49705111 - MIR SINE MIR -56 206 31 678 217 0 0 chr13 52168175 52168295 -49704874 + MER82 DNA MER2_type 534 653 0 1937 125 25 0 chr13 52168523 52168803 -49704366 + AluSx SINE Alu 1 287 -25 40 0 0 0 chr13 52168803 52168843 -49704326 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr13 52168924 52168957 -49704212 + AT_rich Low_complexity Low_complexity 1 33 0 1490 208 0 17 chr13 52169155 52169448 -49703721 + AluJo SINE Alu 1 288 -24 22 35 0 0 chr13 52169979 52170008 -49703161 + AT_rich Low_complexity Low_complexity 1 29 0 1498 99 24 0 chr13 52170519 52170731 -49702438 + AluSc SINE Alu 2 218 -91 482 259 76 76 chr13 52171054 52171316 -49701853 + LTR48B LTR ERV1 383 644 0 391 307 80 19 chr13 52171331 52171543 -49701626 - L1ME LINE L1 -349 5772 5548 756 227 19 39 chr13 52171709 52171916 -49701253 - MER20 DNA MER1_type 0 219 17 27 62 0 0 chr13 52172206 52172254 -49700915 + AT_rich Low_complexity Low_complexity 1 48 0 241 376 9 0 chr13 52172876 52172985 -49700184 - MIR3 SINE MIR -31 177 68 2291 84 0 19 chr13 52173013 52173323 -49699846 + AluSp SINE Alu 1 304 -9 36 0 0 0 chr13 52173602 52173638 -49699531 + AT_rich Low_complexity Low_complexity 1 36 0 37 39 0 0 chr13 52174574 52174625 -49698544 + AT_rich Low_complexity Low_complexity 1 51 0 1783 128 97 31 chr13 52174822 52175174 -49697995 + THE1C LTR MaLR 1 375 0 32 75 0 0 chr13 52175175 52175242 -49697927 + AT_rich Low_complexity Low_complexity 1 67 0 367 313 67 22 chr13 52176115 52176294 -49696875 - LTR33 LTR ERVL -231 290 104 768 313 116 17 chr13 52176406 52176812 -49696357 + L2 LINE L2 1269 1714 -1600 500 252 12 82 chr13 52176819 52177021 -49696148 + LTR40a LTR ERVL 1 190 -272 496 267 27 40 chr13 52177233 52177383 -49695786 + LTR40b LTR ERVL 270 417 -45 2418 294 99 28 chr13 52177444 52178378 -49694791 + L2 LINE L2 1746 2791 -522 2044 118 3 16 chr13 52178378 52178692 -49694477 + AluSg SINE Alu 1 310 0 2418 294 99 28 chr13 52178692 52178957 -49694212 + L2 LINE L2 2791 3036 -277 1710 187 70 53 chr13 52179368 52179823 -49693346 + MLT1C LTR MaLR 3 465 -2 5863 119 14 11 chr13 52180170 52181075 -49692094 - L1PA14 LINE L1 0 6161 5254 337 286 154 26 chr13 52182085 52182312 -49690857 - LTR16A1 LTR ERVL 0 457 202 2109 115 7 0 chr13 52182523 52182811 -49690358 - AluSc SINE Alu -19 290 1 22 35 0 0 chr13 52183196 52183225 -49689944 + AT_rich Low_complexity Low_complexity 1 29 0 699 195 0 0 chr13 52183267 52183395 -49689774 - AluJo SINE Alu -178 134 7 186 191 21 43 chr13 52183459 52183506 -49689663 + MIR SINE MIR 107 152 -110 21 57 0 0 chr13 52184579 52184614 -49688555 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 52184994 52185015 -49688154 + AT_rich Low_complexity Low_complexity 1 21 0 2072 109 4 0 chr13 52185388 52185662 -49687507 + AluSg SINE Alu 17 291 -19 1065 186 0 10 chr13 52185669 52185868 -49687301 + L1MA9 LINE L1 6072 6268 -44 278 256 12 47 chr13 52186108 52186194 -49686975 + L2 LINE L2 3227 3309 -4 32 57 0 0 chr13 52186196 52186249 -49686920 + AT_rich Low_complexity Low_complexity 1 53 0 2400 268 59 58 chr13 52187586 52187882 -49685287 + L1ME2 LINE L1 236 530 -5866 1093 245 137 8 chr13 52187882 52188233 -49684936 - MSTD LTR MaLR 0 396 1 2400 268 59 58 chr13 52188233 52189168 -49684001 + L1ME2 LINE L1 530 1469 -4927 1327 127 15 0 chr13 52189168 52189365 -49683804 + AluSq SINE Alu 102 301 -12 925 256 129 31 chr13 52189554 52190223 -49682946 + L1ME2 LINE L1 1790 2523 -3873 247 292 43 32 chr13 52190219 52190404 -49682765 + L1ME2 LINE L1 3158 3344 -2871 * 1082 174 191 20 chr13 52190410 52190703 -49682466 + MER61A LTR ERV1 1 343 0 1914 179 47 22 chr13 52190703 52191333 -49681836 + MER61A-int LTR ERV1 1 777 -4440 21541 100 45 18 chr13 52191371 52195006 -49678163 + MER61A-int LTR ERV1 1411 5216 -1 2067 122 24 12 chr13 52195008 52195345 -49677824 + MER61A LTR ERV1 3 343 0 678 317 58 16 chr13 52195345 52195727 -49677442 + L1ME2 LINE L1 3340 3737 -2478 373 236 264 0 chr13 52195738 52195844 -49677325 + MLT1E LTR MaLR 2 135 -458 819 301 98 0 chr13 52195845 52196081 -49677088 + MLT1E LTR MaLR 335 593 0 1684 203 48 24 chr13 52196155 52196530 -49676639 - MLT1B LTR MaLR -6 384 1 2796 268 69 34 chr13 52196531 52198805 -49674364 + L1ME2 LINE L1 3796 6379 -24 210 309 0 0 chr13 52200320 52200362 -49672807 - L2 LINE L2 -256 3057 3016 514 263 95 62 chr13 52200607 52200911 -49672258 - MER46C DNA MER2_type -24 314 1 240 35 0 0 chr13 52201179 52201208 -49671961 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 308 305 11 0 chr13 52201901 52201996 -49671173 + MIR SINE MIR 36 131 -131 30 69 0 0 chr13 52202759 52202817 -49670352 + AT_rich Low_complexity Low_complexity 1 58 0 535 330 148 32 chr13 52203322 52203955 -49669214 - L2 LINE L2 -778 2536 1830 2530 149 128 39 chr13 52203978 52204547 -49668622 + LTR29 LTR ERV1 1 620 -2 2950 217 114 77 chr13 52204549 52205203 -49667966 + LTR29-int LTR ERV1 1 629 -5702 1947 120 3 65 chr13 52205203 52205528 -49667641 - AluSq SINE Alu -7 306 2 2950 217 114 77 chr13 52205528 52206237 -49666932 + LTR29-int LTR ERV1 629 1415 -4916 266 220 46 73 chr13 52206306 52206415 -49666754 - LTR27 LTR ERV1 -4 632 527 382 274 19 0 chr13 52206472 52206578 -49666591 - LTR28 LTR ERV1 -69 951 844 3799 183 29 6 chr13 52206625 52207320 -49665849 - MER50 LTR ERV1 -23 711 1 3671 166 35 79 chr13 52207321 52208394 -49664775 + LTR29-int LTR ERV1 2562 4335 -1900 971 185 98 84 chr13 52208394 52208602 -49664567 - MSTA LTR MaLR 0 428 213 369 0 0 0 chr13 52208602 52208643 -49664526 + (CA)n Simple_repeat Simple_repeat 2 42 0 971 185 98 84 chr13 52208643 52208721 -49664448 - MSTA LTR MaLR -215 213 138 771 176 40 7 chr13 52208737 52208885 -49664284 - LOR1-int LTR ERV1 -2440 5680 5528 490 198 10 10 chr13 52208889 52208985 -49664184 - MSTA LTR MaLR -332 96 1 6151 155 41 16 chr13 52208985 52210168 -49663001 + LTR29-int LTR ERV1 4331 5542 -789 281 366 90 8 chr13 52210943 52211077 -49662092 + MIR SINE MIR 19 163 -99 1460 236 122 40 chr13 52211077 52211552 -49661617 + MER67D LTR ERV1 1 514 0 318 230 27 0 chr13 52211552 52211626 -49661543 + MIR SINE MIR 160 235 -27 180 152 0 0 chr13 52211775 52211808 -49661361 + (TG)n Simple_repeat Simple_repeat 2 34 0 1880 129 102 12 chr13 52212713 52213055 -49660114 - THE1C LTR MaLR -2 373 1 443 266 94 41 chr13 52213415 52213659 -49659510 - L1M4 LINE L1 -1517 4629 4373 827 266 73 23 chr13 52214152 52214752 -49658417 + L1MDa LINE L1 2349 2984 -3556 4597 93 26 39 chr13 52214752 52215449 -49657720 - LTR12 LTR ERV1 0 688 1 827 266 73 23 chr13 52215449 52215483 -49657686 + L1MDa LINE L1 2984 3015 -3525 1193 241 110 24 chr13 52215483 52215864 -49657305 + MLT2D LTR ERVL 1 414 0 1332 195 39 25 chr13 52216010 52216292 -49656877 + AluJo SINE Alu 3 288 -24 297 0 0 0 chr13 52216308 52216341 -49656828 + (TG)n Simple_repeat Simple_repeat 2 34 0 505 158 105 0 chr13 52216347 52216461 -49656708 - L1MC2 LINE L1 -25 6319 6194 * 1530 194 22 12 chr13 52216458 52216777 -49656392 + L1MC2 LINE L1 5868 6189 -155 658 323 26 16 chr13 52217368 52217621 -49655548 - MIR SINE MIR -4 258 4 3314 140 18 0 chr13 52217622 52218165 -49655004 + L1PA5 LINE L1 5595 6147 -7 633 261 151 68 chr13 52218483 52218908 -49654261 - MLT1J LTR MaLR -35 476 17 1765 164 0 19 chr13 52219052 52219364 -49653805 - AluSx SINE Alu -2 310 5 252 173 0 37 chr13 52219446 52219527 -49653642 + (TA)n Simple_repeat Simple_repeat 2 79 0 219 349 47 9 chr13 52219997 52220103 -49653066 - MIR SINE MIR -101 161 52 2071 149 11 29 chr13 52220158 52220540 -49652629 - THE1C LTR MaLR 0 375 1 313 256 161 36 chr13 52220933 52221101 -49652068 + MER53 DNA DNA 1 189 0 34 0 0 0 chr13 52221906 52221940 -49651229 + AT_rich Low_complexity Low_complexity 1 34 0 234 91 0 0 chr13 52222640 52222673 -49650496 + (TA)n Simple_repeat Simple_repeat 2 34 0 1724 182 0 0 chr13 52225199 52225495 -49647674 + AluJb SINE Alu 1 296 -16 934 217 0 0 chr13 52226260 52226421 -49646748 - MER58A DNA MER1_type 0 166 6 234 225 14 42 chr13 52227088 52227159 -49646010 - MER115 DNA AcHobo -9 684 616 1678 246 218 25 chr13 52227189 52228208 -49644961 - Zaphod DNA AcHobo -64 3967 2752 228 170 19 38 chr13 52228892 52228945 -49644224 - MLT1J LTR MaLR -69 442 391 309 293 83 79 chr13 52229260 52229513 -49643656 + LTR67 LTR ERVL 85 338 -219 2591 201 13 6 chr13 52229578 52230231 -49642938 - MER67C LTR ERV1 -2 708 1 235 320 120 40 chr13 52230375 52230550 -49642619 - MIR SINE MIR -59 203 15 405 70 0 0 chr13 52230718 52230775 -49642394 + (TG)n Simple_repeat Simple_repeat 2 58 0 366 335 52 26 chr13 52231147 52231338 -49641831 - MLT1J LTR MaLR -92 419 224 263 240 40 13 chr13 52231678 52231753 -49641416 + LTR67 LTR ERVL 433 509 -48 34 0 0 0 chr13 52232059 52232093 -49641076 + AT_rich Low_complexity Low_complexity 1 34 0 367 237 11 102 chr13 52234096 52234273 -49638896 + L1M4 LINE L1 3883 4043 -2103 3942 87 29 2 chr13 52236048 52236610 -49636559 - L1PA11 LINE L1 -2 6172 5596 23 33 0 0 chr13 52237093 52237123 -49636046 + AT_rich Low_complexity Low_complexity 1 30 0 278 341 36 0 chr13 52237439 52237577 -49635592 + MIR SINE MIR 72 214 -48 2498 71 0 0 chr13 52238545 52238856 -49634313 - AluSp SINE Alu -2 311 1 31 0 0 0 chr13 52238978 52239009 -49634160 + AT_rich Low_complexity Low_complexity 1 31 0 1876 107 0 0 chr13 52239300 52239609 -49633560 - AluSx SINE Alu 0 329 21 438 262 24 42 chr13 52239640 52239808 -49633361 + L2 LINE L2 3112 3276 -37 25 51 0 0 chr13 52240071 52240110 -49633059 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr13 52241780 52241810 -49631359 + AT_rich Low_complexity Low_complexity 1 30 0 203 100 0 50 chr13 52242599 52242639 -49630530 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 1696 186 3 0 chr13 52242885 52243180 -49629989 - AluJb SINE Alu -14 298 3 219 192 19 0 chr13 52243681 52243733 -49629436 + (TA)n Simple_repeat Simple_repeat 2 54 0 205 308 125 0 chr13 52244144 52244248 -49628921 - MIR SINE MIR -97 165 49 23 54 0 0 chr13 52244537 52244574 -49628595 + AT_rich Low_complexity Low_complexity 1 37 0 237 300 17 0 chr13 52245382 52245442 -49627727 + L2 LINE L2 3197 3257 -15 8169 203 39 15 chr13 52245484 52248227 -49624942 + L1PA16 LINE L1 3356 6165 -1 448 295 142 19 chr13 52248572 52248840 -49624329 - L2 LINE L2 -601 2713 2413 1452 217 84 18 chr13 52248840 52249211 -49623958 - MSTD LTR MaLR 0 428 1 654 314 69 22 chr13 52249273 52249550 -49623619 - L2 LINE L2 -1840 1474 1185 9907 158 24 1 chr13 52249555 52251240 -49621929 - Tigger1 DNA MER2_type 0 2418 695 6115 257 35 25 chr13 52251243 52254366 -49618803 - L1PBb LINE L1 -2256 4593 1360 236 283 11 11 chr13 52254374 52254466 -49618703 - L1PBb LINE L1 -5285 1564 1473 374 350 85 71 chr13 52255187 52255695 -49617474 - L1PBb LINE L1 -6318 532 18 2203 138 28 6 chr13 52255696 52256052 -49617117 - THE1B LTR MaLR 0 364 1 9687 129 18 31 chr13 52256052 52257653 -49615516 - THE1B-int LTR MaLR 0 1580 1 2419 120 19 6 chr13 52257653 52258012 -49615157 - THE1B LTR MaLR 0 364 1 221 255 205 43 chr13 52258014 52258175 -49614994 - MIR3 SINE MIR -12 196 10 2423 193 19 6 chr13 52258231 52258703 -49614466 - Tigger1 DNA MER2_type -1927 491 14 672 326 68 4 chr13 52258721 52259000 -49614169 - L2 LINE L2 -2138 1176 880 351 77 19 0 chr13 52259754 52259806 -49613363 - MADE1 DNA Mariner -26 54 2 28 0 0 0 chr13 52259952 52259980 -49613189 + AT_rich Low_complexity Low_complexity 1 28 0 2198 129 0 0 chr13 52260562 52260873 -49612296 - AluSq SINE Alu 0 313 3 7067 47 11 0 chr13 52260944 52262446 -49610723 - L1PA5 LINE L1 -1 6153 4635 734 257 25 40 chr13 52262446 52262648 -49610521 + MER20 DNA MER1_type 9 207 -12 26 0 0 0 chr13 52263005 52263031 -49610138 + AT_rich Low_complexity Low_complexity 1 26 0 239 361 37 19 chr13 52263161 52263269 -49609900 - MIR SINE MIR -77 131 22 25 31 0 0 chr13 52265637 52265669 -49607500 + AT_rich Low_complexity Low_complexity 1 32 0 889 186 109 23 chr13 52265675 52265919 -49607250 + L1MB1 LINE L1 5918 6180 0 189 0 0 0 chr13 52266263 52266284 -49606885 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 234 295 12 76 chr13 52266359 52266608 -49606561 - HsTC2 DNA Tc2 -1308 590 360 25 31 0 0 chr13 52266846 52266878 -49606291 + AT_rich Low_complexity Low_complexity 1 32 0 2004 75 0 15 chr13 52267467 52267767 -49605402 + AluY SINE Alu 29 324 0 2763 219 27 21 chr13 52267852 52267897 -49605272 + MER82 DNA MER2_type 23 66 -587 1807 182 31 0 chr13 52267897 52268248 -49604921 - MER47A DNA MER2_type -1 365 4 2763 219 27 21 chr13 52268248 52268824 -49604345 + MER82 DNA MER2_type 66 648 -5 326 107 18 0 chr13 52269112 52269168 -49604001 + (TA)n Simple_repeat Simple_repeat 2 58 0 230 318 0 16 chr13 52269301 52269364 -49603805 - MLT1K LTR MaLR -197 391 330 2018 184 104 2 chr13 52269661 52270101 -49603068 + L1MB3 LINE L1 5695 6179 -4 11852 30 1 0 chr13 52270117 52271536 -49601633 - L1P LINE L1 -859 5287 3868 2169 55 0 0 chr13 52271536 52271803 -49601366 + L1PA4 LINE L1 5882 6150 0 1958 99 10 51 chr13 52271803 52272096 -49601073 - AluY SINE Alu -30 281 1 14449 29 0 4 chr13 52272364 52274870 -49598299 + L1PA3 LINE L1 3650 6155 0 1993 142 47 33 chr13 52275309 52275668 -49597501 - THE1B LTR MaLR 0 364 1 10356 110 20 12 chr13 52275668 52277236 -49595933 - THE1B-int LTR MaLR 0 1580 1 1903 157 51 28 chr13 52277236 52277592 -49595577 - THE1B LTR MaLR 0 364 1 1107 336 83 58 chr13 52277939 52278499 -49594670 - L2 LINE L2 -562 2752 2207 1246 219 81 98 chr13 52278499 52279028 -49594141 - MLT2B1 LTR ERVL 0 520 1 1107 336 83 58 chr13 52279028 52279129 -49594040 - L2 LINE L2 -1107 2207 2110 2158 119 3 0 chr13 52279129 52279439 -49593730 + AluSq SINE Alu 1 311 -2 1107 336 83 58 chr13 52279439 52279622 -49593547 - L2 LINE L2 -1204 2110 1886 975 296 85 10 chr13 52279708 52280106 -49593063 - L2 LINE L2 -1894 1420 993 1402 118 55 9 chr13 52281021 52281241 -49591928 - MER30 DNA MER1_type 0 230 1 26 74 0 0 chr13 52282213 52282267 -49590902 + AT_rich Low_complexity Low_complexity 1 54 0 205 171 0 0 chr13 52282872 52282907 -49590262 + (CAT)n Simple_repeat Simple_repeat 1 35 0 1839 114 8 8 chr13 52283065 52283329 -49589840 + AluSq SINE Alu 45 308 -5 273 347 16 0 chr13 52284094 52284257 -49588912 + (TATG)n Simple_repeat Simple_repeat 1 165 0 22 0 0 0 chr13 52284455 52284477 -49588692 + AT_rich Low_complexity Low_complexity 1 22 0 631 308 48 77 chr13 52286053 52286469 -49586700 + L2 LINE L2 392 795 -2519 8154 222 51 41 chr13 52286493 52286789 -49586380 - L1MB1 LINE L1 -2 6166 5874 2051 205 19 14 chr13 52286789 52287213 -49585956 + MSTB LTR MaLR 1 426 0 8154 222 51 41 chr13 52287213 52288830 -49584339 - L1MB1 LINE L1 -294 5874 4176 237 33 0 0 chr13 52288830 52288860 -49584309 + (TG)n Simple_repeat Simple_repeat 1 30 0 8154 222 51 41 chr13 52288860 52290234 -49582935 - L1MB1 LINE L1 -1992 4176 2817 24 67 0 0 chr13 52290872 52290917 -49582252 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr13 52292468 52292496 -49580673 + AT_rich Low_complexity Low_complexity 1 28 0 420 266 48 0 chr13 52292803 52292927 -49580242 - MER94 DNA DNA 0 134 5 238 321 38 0 chr13 52293415 52293521 -49579648 - L1ME LINE L1 -364 5798 5689 22 0 0 0 chr13 52293633 52293655 -49579514 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 52294062 52294084 -49579085 + AT_rich Low_complexity Low_complexity 1 22 0 229 270 16 16 chr13 52294182 52294245 -49578924 - MER5B DNA MER1_type -111 67 5 200 119 71 0 chr13 52295401 52295443 -49577726 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1743 204 69 8 chr13 52295449 52295826 -49577343 + L1PA16 LINE L1 5726 6125 -41 21 57 0 0 chr13 52296252 52296287 -49576882 + AT_rich Low_complexity Low_complexity 1 35 0 236 351 55 27 chr13 52296316 52296646 -49576523 - L1ME LINE L1 -266 5855 5517 1284 186 75 0 chr13 52296649 52296901 -49576268 + AluJb SINE Alu 26 296 -16 368 193 0 0 chr13 52297027 52297084 -49576085 - AluS SINE Alu -243 57 1 33 0 0 0 chr13 52297114 52297147 -49576022 + AT_rich Low_complexity Low_complexity 1 33 0 188 214 18 0 chr13 52297268 52297324 -49575845 + GA-rich Low_complexity Low_complexity 3 59 0 1516 180 79 22 chr13 52297445 52297800 -49575369 + THE1C LTR MaLR 1 375 0 766 178 83 70 chr13 52298395 52298471 -49574698 - MLT1B LTR MaLR -144 246 172 2248 59 7 23 chr13 52298471 52298776 -49574393 - AluY SINE Alu -11 300 1 766 178 83 70 chr13 52298776 52298941 -49574228 - MLT1B LTR MaLR -218 172 2 1687 232 24 26 chr13 52298942 52299364 -49573805 - MLT1B-int LTR MaLR 0 1735 1315 1415 206 18 22 chr13 52299454 52299531 -49573638 - MLT1B-int LTR MaLR -803 568 492 1384 130 26 30 chr13 52299531 52299762 -49573407 - MER30 DNA MER1_type 0 230 1 1415 206 18 22 chr13 52299762 52300137 -49573032 - MLT1B-int LTR MaLR -879 492 1 1286 221 40 63 chr13 52300137 52300454 -49572715 - MLT1B LTR MaLR 0 390 82 2399 55 0 3 chr13 52300454 52300745 -49572424 + AluY SINE Alu 2 291 -20 1286 221 40 63 chr13 52300745 52300826 -49572343 - MLT1B LTR MaLR -308 82 1 24 0 0 0 chr13 52302504 52302528 -49570641 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr13 52302906 52302936 -49570233 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr13 52304410 52304432 -49568737 + AT_rich Low_complexity Low_complexity 1 22 0 201 353 40 40 chr13 52304728 52304769 -49568400 + L2 LINE L2 253 293 -3021 1873 152 6 19 chr13 52304769 52305085 -49568084 - AluSx SINE Alu 0 312 1 201 353 40 40 chr13 52305085 52305193 -49567976 + L2 LINE L2 292 402 -2912 255 133 0 0 chr13 52308524 52308569 -49564600 + (TG)n Simple_repeat Simple_repeat 2 46 0 523 330 187 45 chr13 52309269 52310177 -49562992 + L2 LINE L2 882 1918 -1396 201 185 56 0 chr13 52310783 52310837 -49562332 + (TTTAA)n Simple_repeat Simple_repeat 1 57 0 236 277 15 0 chr13 52310847 52310912 -49562257 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 344 284 53 77 chr13 52311177 52311462 -49561707 - L1 LINE L1 -2198 3948 3671 2198 117 0 3 chr13 52311506 52311814 -49561355 + AluSc SINE Alu 1 307 -2 22 56 0 0 chr13 52311905 52311941 -49561228 + AT_rich Low_complexity Low_complexity 1 36 0 370 350 100 0 chr13 52312904 52313084 -49560085 + MIR SINE MIR 59 256 -6 345 318 58 75 chr13 52313433 52313792 -49559377 - L2 LINE L2 -33 3239 2887 2207 96 19 16 chr13 52313888 52314200 -49558969 - AluSq SINE Alu 0 313 1 415 283 100 33 chr13 52315108 52315348 -49557821 + L2 LINE L2 2477 2732 -582 220 294 155 16 chr13 52316202 52316389 -49556780 + L2 LINE L2 2851 3063 -250 385 325 125 10 chr13 52317101 52317301 -49555868 - MIR SINE MIR -3 259 37 303 114 0 0 chr13 52317560 52317604 -49555565 + MIR SINE MIR 80 123 -139 467 257 79 14 chr13 52317806 52317946 -49555223 + MIR SINE MIR 95 243 -19 284 220 88 55 chr13 52318428 52318519 -49554650 + MIR SINE MIR 114 207 -55 269 259 19 56 chr13 52318542 52318650 -49554519 - MER94 DNA DNA -30 104 1 226 159 0 0 chr13 52319269 52319313 -49553856 + L1P LINE L1 4840 4883 -1263 1289 125 5 0 chr13 52319416 52319608 -49553561 + AluSg/x SINE Alu 119 311 -1 21 0 0 0 chr13 52319713 52319734 -49553435 + AT_rich Low_complexity Low_complexity 1 21 0 1599 202 13 79 chr13 52319950 52320341 -49552828 - MLT1A1 LTR MaLR 0 365 1 387 105 0 0 chr13 52320543 52320600 -49552569 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 218 354 0 12 chr13 52321197 52321279 -49551890 - MER5A DNA MER1_type -5 184 104 3835 169 32 69 chr13 52322845 52323742 -49549427 - MER6 DNA MER2_type 0 865 2 387 0 0 0 chr13 52325307 52325350 -49547819 + (TG)n Simple_repeat Simple_repeat 2 44 0 30 59 0 0 chr13 52325756 52325807 -49547362 + AT_rich Low_complexity Low_complexity 1 51 0 5627 149 84 16 chr13 52326050 52327199 -49545970 + Tigger3b DNA MER2_type 3 1228 -3 209 32 0 32 chr13 52327277 52327308 -49545861 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1871 161 0 7 chr13 52327311 52327603 -49545566 - AluSx SINE Alu -22 290 1 273 361 158 24 chr13 52328021 52328356 -49544813 - L2 LINE L2 -467 2847 2468 227 318 70 16 chr13 52328901 52329030 -49544139 - L2 LINE L2 -1360 1954 1819 2257 70 0 13 chr13 52329051 52329349 -49543820 - AluY SINE Alu -17 294 1 381 89 0 0 chr13 52329466 52329522 -49543647 + Alu SINE Alu 252 307 -1 607 209 86 12 chr13 52329529 52329692 -49543477 - L1MA9 LINE L1 -67 6245 6071 3821 145 12 12 chr13 52330816 52331480 -49541689 - L1MA8 LINE L1 -3 6288 5625 2081 291 65 42 chr13 52331678 52332965 -49540204 + L1MC4a LINE L1 5274 6590 -1218 829 230 7 99 chr13 52333019 52333317 -49539852 + MLT2B1 LTR ERVL 185 457 -63 616 195 11 11 chr13 52333323 52333497 -49539672 + (CATA)n Simple_repeat Simple_repeat 4 177 0 240 143 0 61 chr13 52333497 52333546 -49539623 + MLT2D LTR ERVL 367 412 -2 720 249 65 0 chr13 52333551 52333720 -49539449 - ERVL LTR ERVL -4468 1296 1117 1305 249 109 53 chr13 52333720 52334442 -49538727 + L1MC4 LINE L1 6596 7358 -684 2943 214 48 12 chr13 52334525 52335166 -49538003 - Tigger6a DNA MER2_type -419 664 1 209 119 24 0 chr13 52336174 52336216 -49536953 + (TA)n Simple_repeat Simple_repeat 1 43 0 2305 97 0 3 chr13 52338705 52339005 -49534164 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr13 52339420 52339441 -49533728 + AT_rich Low_complexity Low_complexity 1 21 0 1010 222 13 34 chr13 52339518 52339752 -49533417 + L1MA9 LINE L1 5565 5793 -519 227 267 11 11 chr13 52339745 52339835 -49533334 - L1MC4 LINE L1 -1339 6703 6614 * 225 0 0 0 chr13 52339838 52339863 -49533306 + (CA)n Simple_repeat Simple_repeat 2 26 0 1484 232 50 42 chr13 52339880 52340355 -49532814 + L1MA9 LINE L1 5794 6272 -40 24 53 0 0 chr13 52340708 52340746 -49532423 + AT_rich Low_complexity Low_complexity 1 38 0 289 331 69 31 chr13 52341481 52341611 -49531558 - L2 LINE L2 0 3313 3179 202 132 26 0 chr13 52341805 52341843 -49531326 + T-rich Low_complexity Low_complexity 3 41 0 220 346 22 4 chr13 52341935 52342114 -49531055 - MIR SINE MIR -7 255 2 375 241 98 94 chr13 52342160 52342446 -49530723 - MER5C DNA MER1_type -37 287 1 1697 181 64 45 chr13 52343696 52344117 -49529052 - L1MC2 LINE L1 0 6344 5916 1483 194 48 117 chr13 52344132 52344652 -49528517 + MER67D LTR ERV1 23 506 -8 887 210 54 5 chr13 52344661 52344885 -49528284 - L1MC2 LINE L1 -427 5917 5683 * 1606 275 53 25 chr13 52344879 52345447 -49527722 - L1MCa LINE L1 -5822 604 21 2361 141 5 3 chr13 52345630 52346000 -49527169 - THE1C LTR MaLR 0 375 5 9213 127 33 50 chr13 52346004 52346231 -49526938 - THE1C-int LTR MaLR 0 1580 1351 2158 149 22 3 chr13 52346231 52346599 -49526570 - THE1C LTR MaLR 0 375 1 9213 127 33 50 chr13 52346599 52347977 -49525192 - THE1C-int LTR MaLR -229 1351 3 2095 151 19 14 chr13 52347979 52348350 -49524819 - THE1C LTR MaLR 0 375 3 28 29 0 0 chr13 52348434 52348469 -49524700 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr13 52349358 52349390 -49523779 + AT_rich Low_complexity Low_complexity 1 32 0 261 0 0 0 chr13 52350108 52350137 -49523032 + (CA)n Simple_repeat Simple_repeat 2 30 0 252 242 45 15 chr13 52350412 52350478 -49522691 - MLT1H LTR MaLR -392 157 90 1910 147 3 3 chr13 52352278 52352578 -49520591 - AluSx SINE Alu -12 300 1 465 263 26 19 chr13 52352609 52352653 -49520516 - L1MA10 LINE L1 -9 6325 6282 2367 252 94 25 chr13 52352653 52353874 -49519295 - L1ME1 LINE L1 -48 6187 4871 1668 260 66 14 chr13 52353864 52354637 -49518532 - L1ME1 LINE L1 -2845 3370 2558 * 523 311 25 0 chr13 52354668 52354954 -49518215 - L1ME1 LINE L1 -3874 2522 2230 377 189 33 0 chr13 52355233 52355323 -49517846 + L1MB1 LINE L1 6075 6167 -1 837 290 45 11 chr13 52355664 52356019 -49517150 - L1MC4 LINE L1 -444 7598 7232 341 282 93 92 chr13 52356064 52356165 -49517004 - L1MD3 LINE L1 -878 6930 6831 2276 110 0 0 chr13 52356165 52356466 -49516703 - AluSx SINE Alu -11 301 1 341 282 93 92 chr13 52356466 52356771 -49516398 - L1MD3 LINE L1 -977 6831 6528 7745 19 0 0 chr13 52356771 52357714 -49515455 - L1PA3 LINE L1 -2 6153 5211 341 282 93 92 chr13 52357714 52357793 -49515376 - L1MD3 LINE L1 -1280 6528 6451 1611 196 15 69 chr13 52357805 52358213 -49514956 - MLT1B LTR MaLR 0 390 5 1625 124 103 22 chr13 52358257 52358530 -49514639 - AluSg SINE Alu -13 297 3 25 51 0 0 chr13 52359755 52359794 -49513375 + AT_rich Low_complexity Low_complexity 1 39 0 462 297 132 15 chr13 52359851 52360184 -49512985 - L1ME3A LINE L1 -203 5967 5596 21 0 0 0 chr13 52360752 52360773 -49512396 + AT_rich Low_complexity Low_complexity 1 21 0 519 17 0 0 chr13 52360808 52360868 -49512301 + (TA)n Simple_repeat Simple_repeat 2 61 0 1943 121 3 32 chr13 52360887 52361200 -49511969 - AluSx SINE Alu -8 304 1 7522 193 48 14 chr13 52361238 52363926 -49509243 - L1PA16 LINE L1 -16 6150 3401 217 222 19 0 chr13 52364093 52364147 -49509022 + MIR SINE MIR 99 153 -109 642 255 25 19 chr13 52364595 52364756 -49508413 + AluJo SINE Alu 125 286 -26 194 226 0 38 chr13 52365305 52365358 -49507811 - L2 LINE L2 0 3272 3222 1183 258 43 43 chr13 52365743 52366643 -49506526 - L1MEc LINE L1 -1230 4985 1974 1258 256 65 56 chr13 52366669 52367115 -49506054 - MER74C LTR ERVL 0 460 11 22 0 0 0 chr13 52367502 52367524 -49505645 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 52367666 52367687 -49505482 + AT_rich Low_complexity Low_complexity 1 21 0 2226 64 0 11 chr13 52368187 52368534 -49504635 - AluY SINE Alu 0 346 3 5010 292 41 22 chr13 52369350 52371093 -49502076 - HERVL74 LTR ERVL -1004 4681 3048 2494 173 101 7 chr13 52371095 52371639 -49501530 - LTR49 LTR ERV1 0 595 1 6115 97 22 6 chr13 52372074 52373003 -49500166 + L1PA8 LINE L1 5226 6169 -3 203 61 30 0 chr13 52373006 52373039 -49500130 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 219 285 47 98 chr13 52373512 52373786 -49499383 + L2 LINE L2 3049 3308 -5 1832 263 55 13 chr13 52373786 52374311 -49498858 - MLT1E2 LTR MaLR 0 626 80 332 295 96 18 chr13 52374189 52374355 -49498814 - MLT2C1 LTR ERVL -179 218 40 * 300 27 0 0 chr13 52376473 52376510 -49496659 + (TG)n Simple_repeat Simple_repeat 2 38 0 662 250 54 22 chr13 52376511 52376695 -49496474 + MER63B DNA MER1_type 1 190 -246 1598 210 58 18 chr13 52376843 52377224 -49495945 - MSTD LTR MaLR 0 396 1 186 43 0 0 chr13 52379303 52379326 -49493843 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 52379750 52379771 -49493398 + AT_rich Low_complexity Low_complexity 1 21 0 26 74 0 0 chr13 52379868 52379922 -49493247 + AT_rich Low_complexity Low_complexity 1 54 0 27 49 0 0 chr13 52380182 52380223 -49492946 + AT_rich Low_complexity Low_complexity 1 41 0 27 0 0 0 chr13 52380473 52380500 -49492669 + AT_rich Low_complexity Low_complexity 1 27 0 2194 196 53 35 chr13 52380678 52381187 -49491982 + MLT2B1 LTR ERVL 1 518 -2 21 0 0 0 chr13 52381541 52381562 -49491607 + AT_rich Low_complexity Low_complexity 1 21 0 677 286 71 29 chr13 52382344 52382582 -49490587 + MIR SINE MIR 8 255 -7 432 257 47 47 chr13 52383980 52384151 -49489018 + MIR SINE MIR 68 238 -24 401 205 0 12 chr13 52384303 52384386 -49488783 + AluJb SINE Alu 208 289 -23 553 261 130 23 chr13 52384858 52385073 -49488096 - MIR SINE MIR -13 249 12 1179 72 0 0 chr13 52385188 52385341 -49487828 - AluSp/q SINE Alu 0 313 161 312 290 39 19 chr13 52385453 52385469 -49487700 + L1PA7 LINE L1 5768 5782 -372 971 190 43 0 chr13 52385469 52385680 -49487489 - L1MB1 LINE L1 -2 6166 5947 312 290 39 19 chr13 52385680 52385818 -49487351 + L1MB1 LINE L1 5782 5925 -229 * 952 161 35 0 chr13 52385681 52385855 -49487314 + L1MB1 LINE L1 5783 5962 -206 325 351 118 43 chr13 52387062 52387569 -49485600 - L2 LINE L2 -906 2408 1864 41 87 0 0 chr13 52387980 52388084 -49485085 + AT_rich Low_complexity Low_complexity 1 104 0 25 65 0 0 chr13 52388971 52389017 -49484152 + AT_rich Low_complexity Low_complexity 1 46 0 43 20 0 0 chr13 52389963 52390013 -49483156 + AT_rich Low_complexity Low_complexity 1 50 0 2241 143 8 11 chr13 52390259 52390624 -49482545 + THE1B LTR MaLR 1 364 0 10889 112 8 1 chr13 52390628 52392194 -49480975 + THE1B-int LTR MaLR 5 1580 0 2161 132 8 48 chr13 52392194 52392573 -49480596 + THE1B LTR MaLR 1 364 0 270 229 0 0 chr13 52393044 52393105 -49480064 + T-rich Low_complexity Low_complexity 4 64 0 369 0 0 0 chr13 52393411 52393452 -49479717 + (TG)n Simple_repeat Simple_repeat 1 41 0 197 240 13 0 chr13 52393864 52393939 -49479230 + CT-rich Low_complexity Low_complexity 2 77 0 191 393 34 29 chr13 52394086 52394292 -49478877 - L2 LINE L2 -517 2797 2591 1180 273 109 48 chr13 52395253 52396828 -49476341 + L1ME3 LINE L1 3808 5481 -693 1278 219 3 41 chr13 52396849 52397141 -49476028 + AluJo SINE Alu 23 303 -9 1174 276 84 14 chr13 52397149 52397660 -49475509 + L1ME3 LINE L1 5505 6051 -111 622 221 25 20 chr13 52398575 52398774 -49474395 - L1MDb LINE L1 -3097 3309 3110 * 1991 235 71 102 chr13 52398771 52399871 -49473298 - L1MDb LINE L1 -3654 2752 1619 2016 115 0 7 chr13 52399871 52400150 -49473019 + AluSc SINE Alu 1 277 -32 1991 235 71 102 chr13 52400150 52400168 -49473001 - L1MDb LINE L1 -4787 1619 1602 432 0 0 0 chr13 52400168 52400216 -49472953 + (TAAA)n Simple_repeat Simple_repeat 3 50 0 1991 235 71 102 chr13 52400216 52400592 -49472577 - L1MDb LINE L1 -4804 1602 1216 1917 151 16 0 chr13 52400592 52400897 -49472272 - AluSx SINE Alu 0 312 3 1991 235 71 102 chr13 52400897 52401806 -49471363 - L1MDb LINE L1 -5190 1216 420 729 307 84 43 chr13 52402024 52402395 -49470774 - L1MDb LINE L1 -6007 402 17 241 275 22 11 chr13 52403486 52403577 -49469592 + Charlie2 DNA MER1_type 2771 2862 0 919 246 25 45 chr13 52403999 52404185 -49468984 + L1P LINE L1 4788 4976 -1170 504 0 0 0 chr13 52404185 52404241 -49468928 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 919 246 25 45 chr13 52404241 52404320 -49468849 + L1P LINE L1 4976 5047 -1099 1798 154 86 14 chr13 52404320 52404670 -49468499 + THE1C LTR MaLR 1 375 0 919 246 25 45 chr13 52404670 52404757 -49468412 + L1P LINE L1 5047 5134 -1012 22 94 0 0 chr13 52404941 52405005 -49468164 + AT_rich Low_complexity Low_complexity 1 64 0 7109 207 22 15 chr13 52405415 52408389 -49464780 - L1PA16 LINE L1 0 6166 3117 359 260 16 8 chr13 52409595 52409718 -49463451 + GA-rich Low_complexity Low_complexity 1 124 0 24 0 0 0 chr13 52409886 52409910 -49463259 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 52410490 52410510 -49462659 + (TA)n Simple_repeat Simple_repeat 2 21 0 372 344 169 10 chr13 52410695 52410890 -49462279 - MIR SINE MIR -31 231 6 1899 148 10 7 chr13 52411190 52411495 -49461674 + AluSq SINE Alu 1 306 -7 2434 66 3 0 chr13 52411797 52412099 -49461070 - AluY SINE Alu -8 303 1 28 0 0 0 chr13 52413057 52413085 -49460084 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 52413645 52413667 -49459502 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 52413964 52414002 -49459167 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr13 52414531 52414557 -49458612 + AT_rich Low_complexity Low_complexity 1 26 0 1454 243 59 4 chr13 52414599 52415105 -49458064 - L1MD3 LINE L1 -1 7994 7351 722 251 61 25 chr13 52415102 52415428 -49457741 - L1MC3 LINE L1 -681 7104 6767 * 29 0 0 0 chr13 52415442 52415471 -49457698 + AT_rich Low_complexity Low_complexity 1 29 0 47 44 0 0 chr13 52415864 52415932 -49457237 + AT_rich Low_complexity Low_complexity 1 68 0 825 245 112 1 chr13 52416145 52416512 -49456657 + MLT1D LTR MaLR 1 453 -52 23 54 0 0 chr13 52416518 52416555 -49456614 + AT_rich Low_complexity Low_complexity 1 37 0 51 88 0 16 chr13 52416975 52417157 -49456012 + AT_rich Low_complexity Low_complexity 1 179 0 241 208 0 0 chr13 52417414 52417462 -49455707 + MLT1D LTR MaLR 458 505 0 2673 129 24 22 chr13 52417488 52417952 -49455217 - MER4C LTR ERV1 0 465 1 23 0 0 0 chr13 52418011 52418034 -49455135 + AT_rich Low_complexity Low_complexity 1 23 0 221 385 47 61 chr13 52419366 52419727 -49453442 - L2 LINE L2 -1 3271 2916 362 289 152 29 chr13 52419978 52420182 -49452987 - L2 LINE L2 -672 2642 2414 269 311 39 19 chr13 52421261 52421364 -49451805 + L2 LINE L2 33 137 -3177 294 258 183 0 chr13 52421637 52421730 -49451439 + MIR SINE MIR 38 147 -115 1424 186 3 62 chr13 52421744 52422035 -49451134 + AluJb SINE Alu 2 275 -37 958 48 80 0 chr13 52422053 52422178 -49450991 - MER85 DNA T2_type -4 135 1 318 365 103 29 chr13 52422200 52422646 -49450523 - LTR33 LTR ERVL -20 501 23 21 0 0 0 chr13 52423517 52423538 -49449631 + AT_rich Low_complexity Low_complexity 1 21 0 396 354 81 58 chr13 52423635 52424276 -49448893 - L2 LINE L2 -1132 2182 1527 205 291 35 58 chr13 52424964 52425050 -49448119 + L3 LINE CR1 1492 1575 -2 21 57 0 0 chr13 52425935 52425970 -49447199 + AT_rich Low_complexity Low_complexity 1 35 0 49 71 0 0 chr13 52426180 52426278 -49446891 + AT_rich Low_complexity Low_complexity 1 98 0 2509 206 35 0 chr13 52426281 52426772 -49446397 - MER6A DNA MER2_type -97 508 1 788 221 0 13 chr13 52427660 52427818 -49445351 - LTR32 LTR ERVL 0 471 316 1561 212 28 6 chr13 52427913 52428239 -49444930 - LTR32 LTR ERVL -124 347 15 4813 192 23 25 chr13 52429707 52430031 -49443138 + L1MA4A LINE L1 4325 4648 -1655 2097 133 0 7 chr13 52430031 52430340 -49442829 + AluSc SINE Alu 3 309 0 4813 192 23 25 chr13 52430340 52431930 -49441239 + L1MA4A LINE L1 4648 6297 -6 41 36 0 0 chr13 52432979 52433034 -49440135 + AT_rich Low_complexity Low_complexity 1 55 0 1370 173 98 7 chr13 52433265 52433542 -49439627 + MER47A DNA MER2_type 65 366 0 383 314 111 26 chr13 52433732 52433958 -49439211 - MIR SINE MIR -15 247 3 751 301 103 58 chr13 52434563 52435508 -49437661 + L1ME3A LINE L1 222 1123 -5440 1960 94 64 27 chr13 52435508 52435806 -49437363 + AluSc SINE Alu 1 309 0 751 301 103 58 chr13 52435806 52435886 -49437283 + L1ME3A LINE L1 1123 1198 -5365 1894 204 33 19 chr13 52435886 52436312 -49436857 - MSTB1 LTR MaLR 0 432 1 751 301 103 58 chr13 52436312 52436363 -49436806 + L1ME3A LINE L1 1198 1348 -5215 1472 256 60 23 chr13 52436414 52436851 -49436318 - MLT1C LTR MaLR -12 455 3 410 241 94 68 chr13 52436864 52437055 -49436114 + L1ME3A LINE L1 1266 1461 -4923 369 309 116 53 chr13 52437079 52437380 -49435789 + L1ME3A LINE L1 1696 2015 -4548 2838 229 36 54 chr13 52437602 52439091 -49434078 + L1MB5 LINE L1 4691 6164 -10 1423 221 83 42 chr13 52439219 52439628 -49433541 + L1MC2 LINE L1 5814 6245 -99 423 0 0 0 chr13 52439628 52439675 -49433494 + (TG)n Simple_repeat Simple_repeat 2 48 0 1423 221 83 42 chr13 52439675 52439723 -49433446 + L1MC2 LINE L1 6245 6290 -54 337 295 83 56 chr13 52440393 52440681 -49432488 + L1ME3A LINE L1 5174 5469 -913 1985 267 40 37 chr13 52440714 52441614 -49431555 + L1ME3A LINE L1 5504 6406 0 2498 46 0 16 chr13 52441713 52442017 -49431152 - AluY SINE Alu -12 299 1 261 262 131 9 chr13 52442577 52442791 -49430378 - Charlie2a DNA MER1_type -540 2322 2083 1658 181 7 13 chr13 52443100 52443409 -49429760 + AluSx SINE Alu 1 307 -5 801 273 116 48 chr13 52443419 52444109 -49429060 - Charlie2a DNA MER1_type -942 1920 1184 216 235 0 0 chr13 52444109 52444177 -49428992 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 1960 181 21 14 chr13 52444624 52445045 -49428124 + L1MA7 LINE L1 5866 6289 -2 762 126 8 39 chr13 52445111 52445238 -49427931 - MER1B DNA MER1_type 0 339 217 579 236 0 0 chr13 52445239 52445349 -49427820 - MER1B DNA MER1_type -187 110 1 400 176 0 35 chr13 52445960 52446045 -49427124 + L1MA5 LINE L1 6202 6283 -17 315 49 0 0 chr13 52446854 52446895 -49426274 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr13 52446984 52447005 -49426164 + AT_rich Low_complexity Low_complexity 1 21 0 2007 194 171 125 chr13 52447258 52448233 -49424936 + LTR28 LTR ERV1 1 1020 0 4313 163 47 18 chr13 52448499 52448581 -49424588 - L1PB4 LINE L1 -2 6154 6076 201 39 0 0 chr13 52448581 52448607 -49424562 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 4313 163 47 18 chr13 52448607 52449394 -49423775 - L1PB4 LINE L1 -80 6076 5260 246 274 24 0 chr13 52449433 52449517 -49423652 + (TA)n Simple_repeat Simple_repeat 1 86 0 310 303 91 0 chr13 52450295 52450394 -49422775 + MER5B DNA MER1_type 1 108 -70 229 291 32 89 chr13 52450456 52450614 -49422555 - MIR SINE MIR -108 154 6 2433 120 19 6 chr13 52451283 52451642 -49421527 + THE1B LTR MaLR 1 364 0 10772 105 2 36 chr13 52451642 52452010 -49421159 + THE1B-int LTR MaLR 1 380 -1200 2044 121 23 10 chr13 52452010 52452317 -49420852 - AluSp SINE Alu -2 311 1 10772 105 2 36 chr13 52452317 52453583 -49419586 + THE1B-int LTR MaLR 380 1580 0 2342 139 17 6 chr13 52453583 52453943 -49419226 + THE1B LTR MaLR 1 364 0 265 332 79 45 chr13 52454337 52454539 -49418630 - MIR SINE MIR -41 221 13 23 0 0 0 chr13 52455272 52455295 -49417874 + AT_rich Low_complexity Low_complexity 1 23 0 34 24 0 0 chr13 52455621 52455662 -49417507 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 52457076 52457108 -49416061 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr13 52457187 52457213 -49415956 + AT_rich Low_complexity Low_complexity 1 26 0 735 304 113 13 chr13 52457845 52458236 -49414933 + LTR16A LTR ERVL 21 450 0 432 328 46 24 chr13 52458265 52458583 -49414586 + L2 LINE L2 2900 3313 0 25 31 0 0 chr13 52458615 52458647 -49414522 + AT_rich Low_complexity Low_complexity 1 32 0 937 250 22 4 chr13 52458761 52458989 -49414180 - L1PA16 LINE L1 -24 6142 5911 22 56 0 0 chr13 52459308 52459344 -49413825 + AT_rich Low_complexity Low_complexity 1 36 0 247 313 27 27 chr13 52460779 52460891 -49412278 + MIR SINE MIR 5 116 -146 1340 145 81 87 chr13 52461441 52461751 -49411418 - AluSx SINE Alu -4 308 1 29 78 0 0 chr13 52462325 52462389 -49410780 + AT_rich Low_complexity Low_complexity 1 64 0 189 0 0 0 chr13 52462411 52462432 -49410737 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2882 161 26 5 chr13 52463138 52463911 -49409258 + L1PA16 LINE L1 5010 5797 -369 * 3659 101 29 5 chr13 52463898 52464451 -49408718 + L1PA7 LINE L1 1687 2252 -3894 2557 187 27 23 chr13 52464455 52465055 -49408114 + pTR5 LTR ERV1 743 1344 -1094 4794 93 131 0 chr13 52465071 52465798 -49407371 + LTR12 LTR ERV1 5 826 0 20875 102 7 0 chr13 52465804 52466383 -49406786 + L1PA7 LINE L1 2259 2833 -3321 1879 117 50 3 chr13 52466383 52466665 -49406504 + AluSc SINE Alu 3 297 -12 20875 102 7 0 chr13 52466665 52469981 -49403188 + L1PA7 LINE L1 2833 6154 0 2017 174 11 8 chr13 52469985 52470348 -49402821 + L1PA16 LINE L1 5780 6143 -23 27 0 0 0 chr13 52470865 52470892 -49402277 + AT_rich Low_complexity Low_complexity 1 27 0 1293 229 56 79 chr13 52471422 52471969 -49401200 - L1MD3 LINE L1 -8 7987 7452 880 248 34 82 chr13 52471969 52472348 -49400821 + MLT1A1 LTR MaLR 1 361 -4 1293 229 56 79 chr13 52472348 52472369 -49400800 - L1MD3 LINE L1 -543 7452 7432 290 196 10 134 chr13 52472407 52472504 -49400665 - MLT1F1 LTR MaLR -451 116 32 370 213 53 11 chr13 52472550 52472644 -49400525 - L1MD3 LINE L1 -693 7302 7205 204 40 0 0 chr13 52472646 52472671 -49400498 + (TAG)n Simple_repeat Simple_repeat 2 26 0 267 31 0 0 chr13 52473058 52473090 -49400079 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1464 220 28 70 chr13 52473158 52473589 -49399580 + MER76 LTR ERV 10 422 -266 307 211 183 58 chr13 52473663 52473767 -49399402 + MER76 LTR ERV 410 526 -162 * 4209 134 96 50 chr13 52473766 52474681 -49398488 - Tigger3b DNA MER2_type -262 969 13 579 320 35 47 chr13 52474691 52475035 -49398134 - L1MD3 LINE L1 -1164 6831 6492 24 0 0 0 chr13 52475334 52475358 -49397811 + AT_rich Low_complexity Low_complexity 1 24 0 2161 103 6 6 chr13 52475445 52475756 -49397413 + AluY SINE Alu 1 311 0 258 224 37 0 chr13 52476496 52476577 -49396592 + L1MCc LINE L1 1370 1618 -4979 311 267 107 40 chr13 52476577 52476727 -49396442 + L1MCc LINE L1 2747 2906 -4216 22 94 0 0 chr13 52476806 52476870 -49396299 + AT_rich Low_complexity Low_complexity 1 64 0 26 50 0 0 chr13 52477482 52477522 -49395647 + AT_rich Low_complexity Low_complexity 1 40 0 228 143 0 0 chr13 52477949 52477991 -49395178 + (TG)n Simple_repeat Simple_repeat 1 42 0 42 65 0 0 chr13 52478802 52478879 -49394290 + AT_rich Low_complexity Low_complexity 1 77 0 297 113 75 38 chr13 52480248 52480354 -49392815 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 25 31 0 0 chr13 52480467 52480499 -49392670 + AT_rich Low_complexity Low_complexity 1 32 0 3024 161 20 61 chr13 52481146 52481849 -49391320 + L1MA8 LINE L1 5618 6291 0 272 285 34 37 chr13 52483715 52483934 -49389235 + L1ME LINE L1 64 591 -5939 571 270 47 67 chr13 52484499 52484840 -49388329 + L1ME LINE L1 927 1260 -5283 1438 137 24 0 chr13 52484867 52485115 -49388054 + L1MA8 LINE L1 6008 6261 -30 279 250 13 13 chr13 52485115 52485191 -49387978 + (TATG)n Simple_repeat Simple_repeat 2 77 0 1288 248 83 62 chr13 52485583 52485948 -49387221 + L1M4 LINE L1 5135 5505 -669 1677 184 11 0 chr13 52485948 52486230 -49386939 - AluJb SINE Alu -26 286 2 1288 248 83 62 chr13 52486230 52486532 -49386637 + L1M4 LINE L1 5505 5799 -375 264 229 29 14 chr13 52486523 52486593 -49386576 + L1M4 LINE L1 4876 4946 -1200 * 457 198 11 0 chr13 52486877 52486968 -49386201 + FRAM/FAM SINE Alu 1 88 -88 226 351 147 27 chr13 52487000 52487259 -49385910 - L2 LINE L2 -1783 1531 1242 185 364 76 61 chr13 52487558 52487690 -49385479 + L2 LINE L2 3139 3272 0 554 178 41 15 chr13 52487706 52487833 -49385336 - L1MA10 LINE L1 -44 6122 6001 231 61 0 0 chr13 52487844 52487877 -49385292 + (TG)n Simple_repeat Simple_repeat 2 34 0 1049 182 33 18 chr13 52487886 52488164 -49385005 - MLT2A2 LTR ERVL 0 453 267 * 2592 166 12 5 chr13 52488155 52488879 -49384290 + MER6 DNA MER2_type 90 864 -1 1152 191 43 0 chr13 52488879 52489125 -49384044 - L1MA9 LINE L1 -150 6034 5854 2549 49 0 3 chr13 52489862 52490166 -49383003 + AluY SINE Alu 1 303 -8 29 90 0 0 chr13 52490420 52490498 -49382671 + AT_rich Low_complexity Low_complexity 1 78 0 271 359 29 0 chr13 52490755 52490858 -49382311 - L2 LINE L2 0 3272 3167 317 289 115 0 chr13 52491217 52491321 -49381848 + MER94 DNA DNA 18 133 -1 213 149 21 21 chr13 52491496 52491543 -49381626 + (CA)n Simple_repeat Simple_repeat 2 48 0 579 288 41 22 chr13 52491711 52491978 -49381191 - L1ME LINE L1 -582 5584 5313 373 184 35 0 chr13 52491982 52492069 -49381100 - L1ME LINE L1 -873 5273 5184 251 245 47 57 chr13 52492363 52492469 -49380700 + LTR43 LTR ERV1 187 291 -311 338 372 23 26 chr13 52493676 52493980 -49379189 + MER110-int LTR ERV1 1355 1657 -5019 531 357 62 40 chr13 52494330 52495157 -49378012 + MER110-int LTR ERV1 2024 2868 -3808 1172 317 57 48 chr13 52495763 52496836 -49376333 + MER110-int LTR ERV1 2518 3599 -3523 337 283 68 51 chr13 52496938 52497175 -49375994 + MER110-int LTR ERV1 5920 6160 -2759 1653 167 17 3 chr13 52497642 52497935 -49375234 + AluSx SINE Alu 1 297 -15 617 350 31 25 chr13 52499093 52499644 -49373525 + MER110-int LTR ERV1 5945 6498 -178 279 253 11 11 chr13 52500000 52500087 -49373082 + LTR43 LTR ERV1 189 275 -327 788 236 43 65 chr13 52500315 52500666 -49372503 - L1M4 LINE L1 -1073 5073 4731 251 217 116 0 chr13 52500731 52500800 -49372369 + HERVL40 LTR ERVL 5392 5468 -62 188 296 11 80 chr13 52501075 52501163 -49372006 + L2 LINE L2 3183 3264 -49 262 299 37 45 chr13 52501318 52501452 -49371717 + MIR SINE MIR 92 224 -38 24 32 0 0 chr13 52501809 52501840 -49371329 + AT_rich Low_complexity Low_complexity 1 31 0 367 286 95 8 chr13 52501847 52501973 -49371196 - LTR40a LTR ERVL -382 137 1 246 265 112 10 chr13 52504004 52504102 -49369067 - L2 LINE L2 -1313 2001 1894 275 87 58 0 chr13 52504122 52504191 -49368978 + (TA)n Simple_repeat Simple_repeat 2 74 0 1612 160 11 17 chr13 52504201 52504488 -49368681 - AluJb SINE Alu -27 285 1 1308 253 102 0 chr13 52504794 52505198 -49367971 + MER110 LTR ERV1 1 445 -46 1964 167 93 13 chr13 52505436 52505832 -49367337 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr13 52506258 52506281 -49366888 + AT_rich Low_complexity Low_complexity 1 23 0 261 288 94 56 chr13 52509046 52509206 -49363963 + MLT1D LTR MaLR 3 168 -337 26 0 0 0 chr13 52510656 52510682 -49362487 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr13 52511337 52511369 -49361800 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr13 52511829 52511856 -49361313 + (TG)n Simple_repeat Simple_repeat 2 28 0 233 171 0 0 chr13 52512210 52512251 -49360918 + L1P LINE L1 3715 3755 -2391 266 167 17 0 chr13 52512606 52512666 -49360503 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr13 52512747 52512775 -49360394 + AT_rich Low_complexity Low_complexity 1 28 0 353 148 45 0 chr13 52512825 52512913 -49360256 + L1MA8 LINE L1 6190 6281 -10 490 184 60 2 chr13 52512929 52513044 -49360125 - L1MA9 LINE L1 -88 6237 6108 190 376 86 23 chr13 52514048 52514269 -49358900 - L2 LINE L2 -250 3063 2829 426 20 0 0 chr13 52514323 52514374 -49358795 + (CA)n Simple_repeat Simple_repeat 2 52 0 1002 149 11 0 chr13 52514379 52514553 -49358616 + HSMAR2 DNA Mariner 4 179 -1123 5167 145 8 47 chr13 52514558 52515206 -49357963 + HSMAR2 DNA Mariner 399 1001 -301 2049 125 16 48 chr13 52515206 52515581 -49357588 - THE1B LTR MaLR -1 363 1 5167 145 8 47 chr13 52515581 52515869 -49357300 + HSMAR2 DNA Mariner 1001 1299 -3 1511 235 86 5 chr13 52515913 52516330 -49356839 - MLT2B1 LTR ERVL -67 453 3 586 301 132 5 chr13 52517157 52517376 -49355793 + MIR SINE MIR 6 252 -10 222 91 0 0 chr13 52517816 52517849 -49355320 + (TG)n Simple_repeat Simple_repeat 1 33 0 1253 182 76 76 chr13 52518887 52519244 -49353925 + L1MB7 LINE L1 5827 6183 -1 907 168 6 0 chr13 52519287 52519460 -49353709 - L1MA4 LINE L1 -7 6293 6120 1863 173 80 50 chr13 52519615 52520038 -49353131 - MER67D LTR ERV1 -78 436 1 3252 89 17 49 chr13 52520225 52520755 -49352414 + L1MA1 LINE L1 5790 6302 0 2225 49 0 4 chr13 52521420 52521684 -49351485 + AluY SINE Alu 39 301 -10 31 0 0 0 chr13 52522560 52522591 -49350578 + AT_rich Low_complexity Low_complexity 1 31 0 201 196 20 0 chr13 52523313 52523364 -49349805 + (TA)n Simple_repeat Simple_repeat 1 52 0 3890 84 26 32 chr13 52523387 52523971 -49349198 - LTR19B LTR ERV1 0 580 1 21 0 0 0 chr13 52524480 52524501 -49348668 + AT_rich Low_complexity Low_complexity 1 21 0 2257 79 0 30 chr13 52524555 52524860 -49348309 - AluY SINE Alu -15 296 1 22 94 0 0 chr13 52525298 52525362 -49347807 + AT_rich Low_complexity Low_complexity 1 64 0 24 67 0 0 chr13 52525391 52525436 -49347733 + AT_rich Low_complexity Low_complexity 1 45 0 233 293 23 38 chr13 52525549 52525682 -49347487 + L1MEc LINE L1 214 344 -6219 318 200 111 37 chr13 52525734 52525924 -49347245 + L1MEc LINE L1 1153 1356 -5207 225 232 24 12 chr13 52525966 52526048 -49347121 + L1MA10 LINE L1 6248 6330 -4 226 210 16 16 chr13 52526134 52526196 -49346973 + (TA)n Simple_repeat Simple_repeat 2 63 0 361 341 91 6 chr13 52526199 52526547 -49346622 + L1MEc LINE L1 1304 1829 -4734 1097 287 98 34 chr13 52526673 52528018 -49345151 + L1MEc LINE L1 2871 4363 -2019 2714 161 29 65 chr13 52528035 52528650 -49344519 - L1MB1 LINE L1 -158 6010 5418 3673 219 54 22 chr13 52528657 52529366 -49343803 + L1MEc LINE L1 4566 5319 -1063 2172 179 39 2 chr13 52529366 52529773 -49343396 - MSTB LTR MaLR -4 422 1 3673 219 54 22 chr13 52529773 52530079 -49343090 + L1MEc LINE L1 5319 5614 -768 24 32 0 0 chr13 52531547 52531578 -49341591 + AT_rich Low_complexity Low_complexity 1 31 0 6376 77 0 7 chr13 52531658 52532511 -49340658 - L1PA8 LINE L1 -1 6171 5325 33 56 0 0 chr13 52532707 52532761 -49340408 + AT_rich Low_complexity Low_complexity 1 54 0 6334 150 48 15 chr13 52534141 52535319 -49337850 + Tigger3b DNA MER2_type 2 1218 -13 22 0 0 0 chr13 52535628 52535650 -49337519 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr13 52536134 52536175 -49336994 + AT_rich Low_complexity Low_complexity 1 41 0 264 185 0 19 chr13 52537436 52537490 -49335679 - MER20 DNA MER1_type -1 218 166 2078 195 28 3 chr13 52537520 52537909 -49335260 - MER70B LTR ERVL -177 401 3 22 35 0 0 chr13 52538324 52538353 -49334816 + AT_rich Low_complexity Low_complexity 1 29 0 813 180 79 16 chr13 52538698 52538887 -49334282 - MER46A DNA MER2_type -29 207 7 211 214 0 0 chr13 52539058 52539100 -49334069 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 68 0 0 chr13 52539440 52539484 -49333685 + AT_rich Low_complexity Low_complexity 1 44 0 2094 113 14 0 chr13 52540147 52540431 -49332738 + AluSq SINE Alu 3 290 -23 299 194 0 0 chr13 52540833 52540895 -49332274 - L1MB1 LINE L1 -1008 5138 5077 972 212 97 56 chr13 52540895 52541286 -49331883 + L1MA9 LINE L1 5867 6273 -39 2154 155 75 5 chr13 52542594 52542994 -49330175 + MSTA LTR MaLR 1 428 0 2169 173 22 14 chr13 52542995 52543411 -49329758 + MSTA-int LTR MaLR 2 420 -1231 222 211 0 0 chr13 52543414 52543452 -49329717 + (CATA)n Simple_repeat Simple_repeat 3 40 0 21 57 0 0 chr13 52543534 52543569 -49329600 + AT_rich Low_complexity Low_complexity 1 35 0 271 341 84 56 chr13 52543569 52543783 -49329386 + L2 LINE L2 2757 2976 -338 424 308 75 0 chr13 52543891 52544037 -49329132 + HERVL40 LTR ERVL 3005 3161 -2369 304 191 32 0 chr13 52544246 52544309 -49328860 + HERVL40 LTR ERVL 3526 3590 -1940 513 238 95 67 chr13 52544476 52544686 -49328483 + HERVL40 LTR ERVL 3751 3966 -1564 192 40 0 0 chr13 52544746 52544771 -49328398 + (TG)n Simple_repeat Simple_repeat 2 26 0 482 74 74 0 chr13 52544793 52544874 -49328295 - L1PA13 LINE L1 -2 6161 6075 297 306 10 0 chr13 52545082 52545180 -49327989 - HAL1b LINE L1 -556 792 694 2697 194 17 15 chr13 52545683 52545885 -49327284 + L1MB3 LINE L1 5582 5782 -401 2316 117 14 25 chr13 52545885 52546253 -49326916 + THE1B LTR MaLR 1 364 0 2697 194 17 15 chr13 52546253 52546647 -49326522 + L1MB3 LINE L1 5782 6179 -4 26 0 0 0 chr13 52546809 52546835 -49326334 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 52547402 52547424 -49325745 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 52548551 52548580 -49324589 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 52549188 52549210 -49323959 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 52549445 52549468 -49323701 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 52549573 52549601 -49323568 + AT_rich Low_complexity Low_complexity 1 28 0 2218 113 3 0 chr13 52549910 52550220 -49322949 + AluSp SINE Alu 1 311 -2 655 322 114 57 chr13 52550251 52550777 -49322392 + MLT1E LTR MaLR 1 601 -23 271 347 0 0 chr13 52550788 52550883 -49322286 - L2 LINE L2 -1862 1452 1358 24 0 0 0 chr13 52550954 52550978 -49322191 + AT_rich Low_complexity Low_complexity 1 24 0 244 247 14 0 chr13 52551015 52551088 -49322081 + A-rich Low_complexity Low_complexity 4 77 0 23 33 0 0 chr13 52551720 52551750 -49321419 + AT_rich Low_complexity Low_complexity 1 30 0 287 276 9 0 chr13 52551840 52551945 -49321224 + L1M4 LINE L1 2515 2620 -3526 413 312 119 32 chr13 52552021 52552274 -49320895 + L1M4 LINE L1 3106 3380 -2766 684 273 84 18 chr13 52552275 52552656 -49320513 + L1M4 LINE L1 4354 4759 -1387 308 365 104 40 chr13 52552823 52553026 -49320143 - L1MEc LINE L1 -5920 476 288 1337 131 40 5 chr13 52553026 52553248 -49319921 + MER30 DNA MER1_type 1 230 0 308 365 104 40 chr13 52553248 52553447 -49319722 - L1MEc LINE L1 -6108 288 48 1937 124 46 0 chr13 52553809 52554115 -49319054 - L1PA14 LINE L1 -13 6148 5829 2007 75 52 0 chr13 52554365 52554632 -49318537 - AluY SINE Alu -30 281 1 396 288 98 39 chr13 52555413 52555991 -49317178 + L1MEc LINE L1 2134 2711 -3504 701 322 129 8 chr13 52556007 52556721 -49316448 + L1MEc LINE L1 3505 4304 -1911 36 0 0 0 chr13 52557088 52557124 -49316045 + AT_rich Low_complexity Low_complexity 1 36 0 10791 153 39 93 chr13 52557212 52559194 -49313975 + L1PA7 LINE L1 12 1820 -4326 1974 128 0 0 chr13 52559194 52559491 -49313678 + AluSc SINE Alu 6 302 0 10791 153 39 93 chr13 52559491 52560105 -49313064 + L1PA7 LINE L1 1820 2466 -3680 236 62 42 62 chr13 52560105 52560201 -49312968 + (TA)n Simple_repeat Simple_repeat 1 94 0 19318 101 10 0 chr13 52560206 52563935 -49309234 + L1PA7 LINE L1 2445 6141 -13 425 174 0 43 chr13 52564161 52564253 -49308916 + MLT1A2 LTR MaLR 1 88 -286 706 220 25 19 chr13 52564446 52564605 -49308564 + MLT1A2 LTR MaLR 215 374 0 2793 171 171 22 chr13 52565468 52566164 -49307005 + L1MC2 LINE L1 5520 6319 -25 26 50 0 0 chr13 52566464 52566504 -49306665 + AT_rich Low_complexity Low_complexity 1 40 0 348 83 0 0 chr13 52567299 52567347 -49305822 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr13 52569700 52569723 -49303446 + AT_rich Low_complexity Low_complexity 1 23 0 2397 196 33 13 chr13 52570536 52571053 -49302116 - LTR27 LTR ERV1 -11 493 3 1113 126 0 9 chr13 52571732 52572001 -49301168 + AluSx SINE Alu 1 312 0 2422 142 36 10 chr13 52572550 52572967 -49300202 - MSTC LTR MaLR 0 428 1 24 32 0 0 chr13 52573356 52573387 -49299782 + AT_rich Low_complexity Low_complexity 1 31 0 1388 203 52 0 chr13 52573530 52573801 -49299368 - AluJo SINE Alu -22 290 6 338 296 74 12 chr13 52574258 52574420 -49298749 + MLT1L LTR MaLR 438 609 -6 1178 246 113 28 chr13 52575183 52575606 -49297563 + MER74B LTR ERVL 71 529 -93 647 258 77 48 chr13 52575722 52576161 -49297008 + L1ME LINE L1 1276 1618 -4924 25 0 0 0 chr13 52576283 52576308 -49296861 + AT_rich Low_complexity Low_complexity 1 25 0 1983 138 3 0 chr13 52576492 52576790 -49296379 - AluSx SINE Alu -13 299 1 29 28 0 0 chr13 52577208 52577244 -49295925 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr13 52577450 52577470 -49295699 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr13 52577946 52577975 -49295194 + AT_rich Low_complexity Low_complexity 1 29 0 26 93 0 0 chr13 52578066 52578141 -49295028 + AT_rich Low_complexity Low_complexity 1 75 0 325 109 91 0 chr13 52579393 52579448 -49293721 - L1 LINE L1 -1220 4926 4867 294 29 0 0 chr13 52580028 52580063 -49293106 + (CA)n Simple_repeat Simple_repeat 2 36 0 28 61 0 0 chr13 52580817 52580866 -49292303 + AT_rich Low_complexity Low_complexity 1 49 0 187 327 209 0 chr13 52581498 52581608 -49291561 + L2 LINE L2 3180 3312 -1 204 421 43 0 chr13 52581651 52581815 -49291354 - L2 LINE L2 -1380 1934 1764 2136 64 14 4 chr13 52581840 52582120 -49291049 + AluSc SINE Alu 1 283 -26 260 26 0 26 chr13 52582120 52582158 -49291011 + (TTAAA)n Simple_repeat Simple_repeat 3 39 0 1189 312 71 73 chr13 52583818 52584750 -49288419 - L2 LINE L2 -1333 1981 1052 353 240 51 63 chr13 52584782 52584957 -49288212 - L2 LINE L2 -2519 795 623 258 81 0 0 chr13 52585185 52585222 -49287947 + (T)n Simple_repeat Simple_repeat 1 37 0 288 364 19 56 chr13 52585438 52585707 -49287462 - L1MDa LINE L1 -6224 316 58 22 0 0 0 chr13 52585940 52585962 -49287207 + AT_rich Low_complexity Low_complexity 1 22 0 212 79 53 0 chr13 52587414 52587452 -49285717 + A-rich Low_complexity Low_complexity 5 44 0 27 49 0 0 chr13 52587840 52587881 -49285288 + AT_rich Low_complexity Low_complexity 1 41 0 565 242 26 13 chr13 52589031 52589184 -49283985 + MER97a DNA MER1_type? 32 186 -708 26 0 0 0 chr13 52589238 52589264 -49283905 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr13 52590317 52590361 -49282808 + AT_rich Low_complexity Low_complexity 1 44 0 2972 172 56 12 chr13 52590362 52591008 -49282161 - L1MA4 LINE L1 -2 6298 5625 875 81 0 0 chr13 52591023 52591134 -49282035 + AluY SINE Alu 1 111 -200 5937 153 40 11 chr13 52591239 52592286 -49280883 + Tigger1 DNA MER2_type 1 1078 -1340 441 254 70 0 chr13 52592287 52592401 -49280768 + FLAM_A SINE Alu 4 125 -17 2814 154 26 0 chr13 52592414 52592881 -49280288 + Tigger1 DNA MER2_type 1062 1540 -878 409 152 0 87 chr13 52592862 52592954 -49280215 + Tigger1 DNA MER2_type 2321 2404 -14 * 23 0 0 0 chr13 52592998 52593021 -49280148 + AT_rich Low_complexity Low_complexity 1 23 0 1445 209 14 0 chr13 52593784 52594067 -49279102 + Tigger7 DNA MER2_type 215 501 -1986 3270 163 30 66 chr13 52594120 52594830 -49278339 + L1MA6 LINE L1 5612 6295 -5 26 30 0 0 chr13 52594833 52594866 -49278303 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr13 52596139 52596165 -49277004 + AT_rich Low_complexity Low_complexity 1 26 0 2450 125 13 13 chr13 52596171 52596546 -49276623 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr13 52596834 52596862 -49276307 + AT_rich Low_complexity Low_complexity 1 28 0 1345 214 68 0 chr13 52597626 52597731 -49275438 + AluJo SINE Alu 12 108 -204 270 81 0 0 chr13 52597731 52597768 -49275401 + (CAA)n Simple_repeat Simple_repeat 3 39 0 1345 214 68 0 chr13 52597768 52597943 -49275226 + AluJo SINE Alu 108 311 -1 23 0 0 0 chr13 52598858 52598881 -49274288 + AT_rich Low_complexity Low_complexity 1 23 0 2236 33 37 0 chr13 52599314 52599586 -49273583 + AluY SINE Alu 30 311 0 209 267 121 78 chr13 52599903 52600109 -49273060 + L2 LINE L2 3098 3312 -1 681 137 0 8 chr13 52600879 52600996 -49272173 + L1PA13 LINE L1 6044 6159 -4 754 163 20 0 chr13 52602421 52602574 -49270595 - L1MB2 LINE L1 0 6171 6016 28 0 0 0 chr13 52603003 52603031 -49270138 + AT_rich Low_complexity Low_complexity 1 28 0 261 191 13 13 chr13 52603679 52603772 -49269397 + L1MA7 LINE L1 6208 6291 0 352 325 38 42 chr13 52603878 52604090 -49269079 + MIR SINE MIR 52 262 0 1306 171 116 8 chr13 52605304 52605562 -49267607 - MLT1B LTR MaLR -13 377 92 22 35 0 0 chr13 52605827 52605856 -49267313 + AT_rich Low_complexity Low_complexity 1 29 0 367 329 87 19 chr13 52606523 52606684 -49266485 + MIR SINE MIR 15 186 -76 389 380 47 19 chr13 52606780 52606993 -49266176 + L2 LINE L2 3051 3269 -3 1689 177 40 50 chr13 52607550 52607946 -49265223 - L1MC1 LINE L1 0 6333 5942 1444 171 52 35 chr13 52608024 52608311 -49264858 - AluSx SINE Alu -20 292 1 1819 95 47 0 chr13 52608339 52608613 -49264556 - L1MA1 LINE L1 0 6302 6016 324 60 40 0 chr13 52608630 52608680 -49264489 - MER4-int LTR ERV1 -1802 4796 4745 * 6439 111 51 18 chr13 52608676 52609774 -49263395 + MER4-int LTR ERV1 4073 5206 -1392 925 217 130 74 chr13 52609815 52609859 -49263310 - L1ME1 LINE L1 -197 5969 5929 495 0 0 0 chr13 52609859 52609914 -49263255 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 1837 128 11 4 chr13 52609920 52610194 -49262975 - AluSx SINE Alu -36 276 1 925 217 130 74 chr13 52610194 52610603 -49262566 - L1ME1 LINE L1 -241 5925 5483 591 292 35 9 chr13 52610738 52611008 -49262161 - L1MDa LINE L1 -1909 4631 4355 414 284 41 0 chr13 52611016 52611185 -49261984 - L1MDa LINE L1 -2260 4280 4105 1443 249 107 41 chr13 52611306 52612255 -49260914 - L1MDa LINE L1 -2646 3894 2879 312 239 102 11 chr13 52612260 52612348 -49260821 + Tigger6 DNA MER2_type 2 97 -1500 300 298 80 68 chr13 52612386 52612722 -49260447 - L1MDa LINE L1 -4931 1609 1270 295 29 0 0 chr13 52614075 52614109 -49259060 + U2 snRNA snRNA 1 34 -154 197 364 39 23 chr13 52614236 52614365 -49258804 - MER5A DNA MER1_type 0 189 59 277 309 57 24 chr13 52615780 52615903 -49257266 - MER5B DNA MER1_type -5 173 47 247 253 253 0 chr13 52616121 52616204 -49256965 + MIR SINE MIR 38 141 -67 565 87 33 0 chr13 52617411 52617503 -49255666 + C-rich Low_complexity Low_complexity 4 98 0 2550 88 36 6 chr13 52617854 52618218 -49254951 + THE1C LTR MaLR 1 375 0 31 68 0 0 chr13 52619183 52619242 -49253927 + AT_rich Low_complexity Low_complexity 1 59 0 302 294 73 107 chr13 52619654 52619926 -49253243 + L1M4 LINE L1 497 759 -5783 489 17 0 0 chr13 52620055 52620113 -49253056 + (CA)n Simple_repeat Simple_repeat 2 59 0 379 285 41 69 chr13 52620126 52620372 -49252797 + L1M4 LINE L1 902 1140 -5406 645 274 59 39 chr13 52620542 52621016 -49252153 + L1M4 LINE L1 1366 1850 -4796 * 1490 276 44 38 chr13 52621011 52621139 -49252030 + L1M4 LINE L1 2646 2772 -3872 2144 136 0 0 chr13 52621139 52621447 -49251722 + AluSx SINE Alu 1 308 -4 1490 276 44 38 chr13 52621447 52621978 -49251191 + L1M4 LINE L1 2772 3309 -3335 906 150 18 0 chr13 52621985 52622152 -49251017 - Tigger7 DNA MER2_type -55 2436 2267 348 24 0 0 chr13 52622153 52622194 -49250975 + (TC)n Simple_repeat Simple_repeat 2 42 0 1505 191 8 17 chr13 52622207 52622892 -49250277 + L1MA8 LINE L1 5554 6291 0 430 239 91 11 chr13 52622895 52623159 -49250010 + L1M4 LINE L1 3571 3855 -2789 21 95 0 0 chr13 52623187 52623250 -49249919 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr13 52623628 52623649 -49249520 + AT_rich Low_complexity Low_complexity 1 21 0 863 84 8 8 chr13 52624648 52624779 -49248390 - L1MA1 LINE L1 -6 6296 6166 23 33 0 0 chr13 52624992 52625022 -49248147 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 52625376 52625407 -49247762 + AT_rich Low_complexity Low_complexity 1 31 0 1368 214 54 91 chr13 52626112 52626594 -49246575 - MER101 LTR ERV1 0 474 11 273 305 12 0 chr13 52626679 52626761 -49246408 - MER94 DNA DNA -51 83 1 4092 102 17 0 chr13 52626768 52627358 -49245811 - MER4A LTR ERV1 0 600 1 22 35 0 0 chr13 52628580 52628609 -49244560 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 52629757 52629787 -49243382 + AT_rich Low_complexity Low_complexity 1 30 0 271 306 59 12 chr13 52631160 52631245 -49241924 - L2 LINE L2 -27 3245 3157 342 0 0 0 chr13 52631906 52631944 -49241225 + (TG)n Simple_repeat Simple_repeat 1 38 0 373 194 0 2 chr13 52631959 52632035 -49241134 - L1ME LINE L1 -526 5636 5562 1822 272 66 56 chr13 52632374 52634411 -49238758 - L1ME1 LINE L1 -17 6409 4356 1071 244 90 38 chr13 52634408 52634484 -49238685 - L1ME1 LINE L1 -2738 3668 3597 * 1333 211 93 11 chr13 52634484 52634764 -49238405 - 7SLRNA srpRNA srpRNA -15 305 3 1071 244 90 38 chr13 52634764 52635220 -49237949 - L1ME1 LINE L1 -2809 3597 3108 567 273 126 39 chr13 52635245 52635948 -49237221 - L1ME1 LINE L1 -4912 1494 776 2318 88 3 0 chr13 52636546 52636841 -49236328 - AluSp SINE Alu -17 296 1 31 68 0 0 chr13 52637528 52637587 -49235582 + AT_rich Low_complexity Low_complexity 1 59 0 226 167 17 33 chr13 52638220 52638280 -49234889 - LTR33A LTR ERVL -19 504 446 1082 150 6 0 chr13 52638748 52638915 -49234254 - MLT1C LTR MaLR 0 467 300 489 322 67 19 chr13 52639151 52639359 -49233810 - ERVL LTR ERVL -1533 4231 4014 28 79 0 0 chr13 52639736 52639799 -49233370 + AT_rich Low_complexity Low_complexity 1 63 0 359 73 18 0 chr13 52639830 52639885 -49233284 + (TA)n Simple_repeat Simple_repeat 2 57 0 2084 24 16 0 chr13 52639923 52640170 -49232999 - L1PA4 LINE L1 -4 6151 5901 562 167 0 18 chr13 52640216 52640330 -49232839 - L1PA15 LINE L1 -5 6160 6049 24 0 0 0 chr13 52641391 52641415 -49231754 + AT_rich Low_complexity Low_complexity 1 24 0 1804 286 95 31 chr13 52641600 52642572 -49230597 + L1MA9 LINE L1 311 1246 -4719 * 7175 216 87 14 chr13 52642569 52644057 -49229112 + L1MA9 LINE L1 2978 4356 -1844 2759 16 0 0 chr13 52644057 52644364 -49228805 - AluYb8 SINE Alu -11 307 1 7175 216 87 14 chr13 52644364 52645866 -49227303 + L1MA9 LINE L1 4356 6198 -2 5546 103 4 11 chr13 52646585 52647400 -49225769 - L1PA13 LINE L1 -4 6159 5351 24 32 0 0 chr13 52648544 52648575 -49224594 + AT_rich Low_complexity Low_complexity 1 31 0 444 383 25 0 chr13 52648744 52648984 -49224185 + MIR SINE MIR 17 262 0 1313 146 61 13 chr13 52649095 52649515 -49223654 + MER61D LTR ERV1 1 501 0 631 257 49 4 chr13 52650668 52650913 -49222256 + L1M3a LINE L1 2195 2450 -3584 225 311 0 0 chr13 52650947 52651008 -49222161 + (CATA)n Simple_repeat Simple_repeat 3 63 0 871 341 152 32 chr13 52651433 52652190 -49220979 + L2 LINE L2 2203 3116 -197 3682 190 7 74 chr13 52652190 52652905 -49220264 - MER54B LTR ERVL -3 790 139 2116 110 7 3 chr13 52652905 52653197 -49219972 + AluSx SINE Alu 3 295 -17 3682 190 7 74 chr13 52653197 52653328 -49219841 - MER54B LTR ERVL -654 139 1 871 341 152 32 chr13 52653328 52653553 -49219616 + L2 LINE L2 3116 3313 0 2489 169 68 8 chr13 52654071 52654544 -49218625 + MER67D LTR ERV1 1 501 -13 1400 268 30 56 chr13 52656465 52656968 -49216201 + MLT1C-int LTR MaLR 882 1371 0 642 176 25 63 chr13 52656968 52657127 -49216042 + MLT1C LTR MaLR 1 153 -314 508 363 44 18 chr13 52657127 52657562 -49215607 - L1M4 LINE L1 -1211 4935 4490 562 291 67 39 chr13 52658366 52658651 -49214518 - MLT1J LTR MaLR -172 339 47 449 262 34 80 chr13 52658900 52659137 -49214032 - L1MC5 LINE L1 -598 7363 7138 5591 165 57 48 chr13 52659138 52659777 -49213392 + Tigger3b DNA MER2_type 2 634 -2394 3919 95 11 2 chr13 52659777 52660324 -49212845 + MER41A LTR ERV1 1 552 -2 5591 165 57 48 chr13 52660324 52660374 -49212795 + Tigger3b DNA MER2_type 634 682 -2346 642 195 16 8 chr13 52660374 52660502 -49212667 + FLAM_A SINE Alu 2 130 -3 5591 165 57 48 chr13 52660502 52661030 -49212139 + Tigger3b DNA MER2_type 682 1231 0 210 197 0 86 chr13 52661270 52661387 -49211782 + T-rich Low_complexity Low_complexity 6 112 0 686 309 58 83 chr13 52661575 52662459 -49210710 - L1M4 LINE L1 -1549 4597 3736 620 297 58 50 chr13 52662449 52663309 -49209860 - L1ME LINE L1 -4674 1406 542 * 267 318 102 60 chr13 52663471 52663873 -49209296 - L1ME LINE L1 -5589 481 63 32 26 0 0 chr13 52663990 52664029 -49209140 + AT_rich Low_complexity Low_complexity 1 39 0 2294 76 0 19 chr13 52664172 52664489 -49208680 - AluY SINE Alu 0 311 1 1708 108 8 8 chr13 52664642 52664891 -49208278 - AluSg SINE Alu -18 292 44 285 148 37 0 chr13 52665169 52665250 -49207919 + (TA)n Simple_repeat Simple_repeat 2 85 0 700 210 30 24 chr13 52665381 52665548 -49207621 + MLT2B1 LTR ERVL 1 168 -352 414 195 0 0 chr13 52665548 52665635 -49207534 + (TATATG)n Simple_repeat Simple_repeat 1 87 0 223 152 40 111 chr13 52665966 52666065 -49207104 + T-rich Low_complexity Low_complexity 1 92 0 3153 113 42 2 chr13 52672539 52673033 -49200136 + L1PA11 LINE L1 5661 6174 0 223 286 92 31 chr13 52673459 52673557 -49199612 + MIR SINE MIR 54 157 -105 332 213 56 19 chr13 52674149 52674309 -49198860 + (TA)n Simple_repeat Simple_repeat 2 167 0 272 207 195 0 chr13 52674421 52674503 -49198666 + L2 LINE L2 3174 3271 -42 22 56 0 0 chr13 52674646 52674682 -49198487 + AT_rich Low_complexity Low_complexity 1 36 0 4109 206 32 49 chr13 52674969 52676403 -49196766 - L1MC2 LINE L1 -9 6335 4919 2219 284 61 26 chr13 52676388 52677426 -49195743 - L1MC2 LINE L1 -2057 4089 3016 * 499 281 71 52 chr13 52677738 52678162 -49195007 + HAL1 LINE L1 1230 1661 -846 342 283 71 9 chr13 52679195 52679308 -49193861 + MIR SINE MIR 49 168 -94 1818 98 8 12 chr13 52679482 52679736 -49193433 - AluSc SINE Alu -21 288 36 1122 230 27 46 chr13 52682431 52682810 -49190359 + MER67C LTR ERV1 5 402 -236 256 212 15 15 chr13 52682875 52682941 -49190228 + MER67D LTR ERV1 449 514 0 22 70 0 0 chr13 52684263 52684306 -49188863 + AT_rich Low_complexity Low_complexity 1 43 0 322 312 76 70 chr13 52684410 52684753 -49188416 + L1M4 LINE L1 4487 4831 -1315 267 229 16 0 chr13 52684904 52684965 -49188204 + L1MA3 LINE L1 6171 6232 -73 689 172 8 0 chr13 52684966 52685100 -49188069 + L1MA3 LINE L1 6171 6305 0 606 351 61 0 chr13 52685147 52685378 -49187791 - MIR SINE MIR 0 262 18 23 33 0 0 chr13 52687041 52687071 -49186098 + AT_rich Low_complexity Low_complexity 1 30 0 241 325 56 30 chr13 52688075 52688272 -49184897 - MIR SINE MIR -13 249 48 201 39 0 0 chr13 52688844 52688870 -49184299 + (A)n Simple_repeat Simple_repeat 1 26 0 277 115 0 0 chr13 52689390 52689442 -49183727 + L1PA14 LINE L1 6110 6161 0 23 78 0 0 chr13 52689619 52689670 -49183499 + AT_rich Low_complexity Low_complexity 1 51 0 365 248 171 29 chr13 52689738 52689948 -49183221 - HAL1b LINE L1 -186 1162 923 1923 170 36 33 chr13 52690144 52690533 -49182636 + MLT1B LTR MaLR 1 390 0 299 329 108 12 chr13 52691459 52691661 -49181508 - MIR SINE MIR -29 233 16 337 327 103 69 chr13 52691670 52692163 -49181006 - L2 LINE L2 0 3313 2804 418 292 80 44 chr13 52692367 52692706 -49180463 - L1MC5 LINE L1 -159 7802 7452 6597 75 11 2 chr13 52693517 52694775 -49178394 + L1PA7 LINE L1 4937 6154 0 181 114 0 45 chr13 52695194 52695238 -49177931 + (TTA)n Simple_repeat Simple_repeat 2 43 0 961 205 77 100 chr13 52695924 52696353 -49176816 - L1ME3A LINE L1 -3 6167 5749 22 35 0 0 chr13 52696373 52696402 -49176767 + AT_rich Low_complexity Low_complexity 1 29 0 1429 249 42 31 chr13 52697429 52697887 -49175282 - MLT1C LTR MaLR -2 465 3 442 152 20 40 chr13 52697911 52698010 -49175159 - MLT1C-int LTR MaLR -40 1331 1235 601 340 21 0 chr13 52698583 52698824 -49174345 - MIR SINE MIR -15 247 2 1708 178 3 28 chr13 52698963 52699403 -49173766 + AluJb SINE Alu 1 432 0 198 271 57 82 chr13 52699405 52699527 -49173642 + L2 LINE L2 3195 3313 0 734 244 60 20 chr13 52699682 52699883 -49173286 + MER58A DNA MER1_type 4 212 -12 417 291 0 9 chr13 52700487 52700597 -49172572 + MLT1F LTR MaLR 36 144 -398 301 320 24 63 chr13 52702713 52702966 -49170203 + MLT1K LTR MaLR 344 586 -2 1704 159 20 48 chr13 52703964 52704316 -49168853 - L1MA7 LINE L1 -276 6015 5674 902 150 103 9 chr13 52704316 52704529 -49168640 + L1MA8 LINE L1 6055 6287 -4 2490 52 0 0 chr13 52704772 52705078 -49168091 - AluY SINE Alu -5 306 1 4708 189 30 20 chr13 52705115 52706151 -49167018 + L1MA7 LINE L1 4737 5761 -530 552 56 0 0 chr13 52706151 52706223 -49166946 + (CA)n Simple_repeat Simple_repeat 1 72 0 4708 189 30 20 chr13 52706223 52706519 -49166650 + L1MA7 LINE L1 5761 6094 -197 2040 143 0 6 chr13 52706519 52706833 -49166336 + AluSx SINE Alu 1 312 0 4708 189 30 20 chr13 52706833 52707034 -49166135 + L1MA7 LINE L1 6094 6291 0 234 192 0 0 chr13 52707638 52707690 -49165479 + GA-rich Low_complexity Low_complexity 2 53 0 432 139 0 0 chr13 52708258 52708337 -49164832 + (GAAA)n Simple_repeat Simple_repeat 4 82 0 355 283 141 33 chr13 52709465 52709649 -49163520 + L2 LINE L2 3106 3309 -4 227 256 13 26 chr13 52709967 52710045 -49163124 + CT-rich Low_complexity Low_complexity 3 79 0 24 0 0 0 chr13 52710087 52710111 -49163058 + AT_rich Low_complexity Low_complexity 1 24 0 2638 104 0 0 chr13 52711097 52711452 -49161717 + THE1A LTR MaLR 1 355 0 919 221 38 23 chr13 52711610 52711873 -49161296 - L1MA9 LINE L1 -38 6274 6008 21 0 0 0 chr13 52712210 52712231 -49160938 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 52712805 52712841 -49160328 + AT_rich Low_complexity Low_complexity 1 36 0 259 302 62 0 chr13 52713157 52713253 -49159916 + MER63 DNA MER1_type 959 1060 -1 2209 66 3 0 chr13 52713377 52713666 -49159503 + L1PA5 LINE L1 5861 6150 -4 40 59 0 0 chr13 52714260 52714328 -49158841 + AT_rich Low_complexity Low_complexity 1 68 0 257 225 0 12 chr13 52714744 52714824 -49158345 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 23 33 0 0 chr13 52715700 52715730 -49157439 + AT_rich Low_complexity Low_complexity 1 30 0 1684 288 77 13 chr13 52715975 52716742 -49156427 - L1MEc LINE L1 -5264 1132 317 30 27 0 0 chr13 52716833 52716870 -49156299 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 52716981 52717004 -49156165 + AT_rich Low_complexity Low_complexity 1 23 0 417 236 125 67 chr13 52718290 52718498 -49154671 + L1ME2 LINE L1 5935 6154 -10 6603 178 19 9 chr13 52718959 52721050 -49152119 + L1PA13 LINE L1 4068 6144 -19 2321 81 7 7 chr13 52721484 52721793 -49151376 + AluSp SINE Alu 1 309 -4 8052 223 53 32 chr13 52721799 52724966 -49148203 - L1MC1 LINE L1 -18 6595 3496 376 283 76 68 chr13 52724966 52725362 -49147807 + MER93a LTR ERV1 1 399 -3 8052 223 53 32 chr13 52725362 52725495 -49147674 - L1MC1 LINE L1 -3117 3496 3367 1911 194 50 17 chr13 52725495 52725912 -49147257 + MSTB1 LTR MaLR 1 431 -1 8052 223 53 32 chr13 52725912 52726903 -49146266 - L1MC1 LINE L1 -3246 3367 2214 2169 106 20 0 chr13 52727391 52727684 -49145485 - AluSg SINE Alu -11 299 1 208 351 83 60 chr13 52727775 52728040 -49145129 + L2 LINE L2 3005 3275 -38 1669 225 0 64 chr13 52728264 52728669 -49144500 + MLT1B LTR MaLR 4 382 -8 1306 233 26 4 chr13 52729002 52729273 -49143896 + AluJb SINE Alu 1 277 -35 243 309 0 0 chr13 52730580 52730635 -49142534 + MIR SINE MIR 42 96 -112 13862 123 12 62 chr13 52730656 52737019 -49136150 - L1PA7 LINE L1 0 6154 12 23 33 0 0 chr13 52737786 52737816 -49135353 + AT_rich Low_complexity Low_complexity 1 30 0 213 368 36 42 chr13 52738114 52738307 -49134862 + L2 LINE L2 1491 1682 -1632 459 285 226 23 chr13 52738578 52739349 -49133820 - L1MEc LINE L1 -1482 4733 3807 780 274 116 24 chr13 52739384 52739797 -49133372 - LTR40c LTR ERVL -7 458 8 489 248 19 12 chr13 52739818 52739979 -49133190 - L1MEc LINE L1 -2437 3778 3617 480 275 66 75 chr13 52740086 52740845 -49132324 - L1MEc LINE L1 -3275 2940 2189 283 125 28 0 chr13 52740950 52741022 -49132147 + (TA)n Simple_repeat Simple_repeat 1 74 0 2199 119 0 0 chr13 52741022 52741325 -49131844 - AluSx SINE Alu -9 303 1 930 234 100 14 chr13 52741359 52741649 -49131520 - L1MA9 LINE L1 -38 6274 5960 426 316 103 35 chr13 52741655 52742003 -49131166 - L1MEc LINE L1 -4152 2063 1692 232 267 22 0 chr13 52742113 52742203 -49130966 - L1MDa LINE L1 -5920 610 519 282 255 32 48 chr13 52742354 52742542 -49130627 - L1MEc LINE L1 -4824 1572 1388 1862 197 61 19 chr13 52742756 52743167 -49130002 + MSTA LTR MaLR 1 428 0 22 88 0 0 chr13 52743500 52743557 -49129612 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr13 52743602 52743623 -49129546 + AT_rich Low_complexity Low_complexity 1 21 0 667 140 98 0 chr13 52743817 52743960 -49129209 + L1MA8 LINE L1 6134 6290 -1 1743 108 93 19 chr13 52744013 52744282 -49128887 + AluSp SINE Alu 1 289 -24 23 54 0 0 chr13 52744282 52744319 -49128850 + AT_rich Low_complexity Low_complexity 1 37 0 317 240 32 8 chr13 52744494 52744619 -49128550 + (TA)n Simple_repeat Simple_repeat 1 128 0 29 60 0 0 chr13 52745140 52745190 -49127979 + AT_rich Low_complexity Low_complexity 1 50 0 325 336 63 56 chr13 52745324 52745610 -49127559 - L2 LINE L2 -4 3309 3022 28 29 0 0 chr13 52746169 52746204 -49126965 + AT_rich Low_complexity Low_complexity 1 35 0 364 261 118 26 chr13 52746396 52746549 -49126620 - MLT1J2 LTR MaLR -15 435 269 261 302 129 29 chr13 52746606 52746745 -49126424 - MLT1J2 LTR MaLR -297 153 1 424 331 173 16 chr13 52746809 52747132 -49126037 - MLT2F LTR ERVL -59 604 231 22 0 0 0 chr13 52747156 52747178 -49125991 + AT_rich Low_complexity Low_complexity 1 22 0 815 40 0 0 chr13 52748548 52748647 -49124522 - L1PA5 LINE L1 -6 6148 6050 641 348 29 4 chr13 52748734 52749010 -49124159 - MLT1J2 LTR MaLR -167 283 1 2549 46 0 3 chr13 52749790 52750095 -49123074 + AluY SINE Alu 1 304 -7 24 32 0 0 chr13 52750690 52750721 -49122448 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 52751159 52751185 -49121984 + AT_rich Low_complexity Low_complexity 1 26 0 901 280 91 55 chr13 52751510 52751874 -49121295 - MLT1D LTR MaLR -128 377 1 249 139 0 0 chr13 52752090 52752133 -49121036 + (CATA)n Simple_repeat Simple_repeat 4 46 0 22 80 0 0 chr13 52753355 52753405 -49119764 + AT_rich Low_complexity Low_complexity 1 50 0 1855 205 112 37 chr13 52753673 52754220 -49118949 + LTR18B LTR ERVL 4 591 -23 21 0 0 0 chr13 52755378 52755399 -49117770 + AT_rich Low_complexity Low_complexity 1 21 0 697 237 0 26 chr13 52755512 52755668 -49117501 - FRAM SINE Alu -19 157 6 22 88 0 0 chr13 52756525 52756582 -49116587 + AT_rich Low_complexity Low_complexity 1 57 0 1728 273 69 22 chr13 52756994 52757237 -49115932 - MLT1E2 LTR MaLR 0 626 396 2873 144 84 2 chr13 52757237 52757724 -49115445 - MER1A DNA MER1_type 0 527 1 1728 273 69 22 chr13 52757724 52758078 -49115091 - MLT1E2 LTR MaLR -230 396 1 3146 115 17 36 chr13 52758133 52758653 -49114516 + MER75 DNA T2_type 1 510 -4 483 18 0 0 chr13 52758706 52758762 -49114407 + (TG)n Simple_repeat Simple_repeat 1 56 0 4405 159 69 7 chr13 52759424 52760247 -49112922 + L1PB4 LINE L1 5271 6144 -12 513 275 52 52 chr13 52761133 52761424 -49111745 + L1MCc LINE L1 103 393 -6030 262 139 0 0 chr13 52761578 52761621 -49111548 + HSMAR1 DNA Mariner 1245 1287 0 981 290 93 44 chr13 52761712 52762398 -49110771 + L1MCc LINE L1 814 1533 -4890 917 265 166 11 chr13 52762489 52762965 -49110204 - L1M4 LINE L1 -2989 3157 2608 180 0 0 0 chr13 52762999 52763019 -49110150 + (TC)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 52763327 52763351 -49109818 + AT_rich Low_complexity Low_complexity 1 24 0 4141 236 36 16 chr13 52763832 52765939 -49107230 - L1MB4 LINE L1 -2 6178 4025 7100 178 4 1 chr13 52766721 52768040 -49105129 + L1PA13 LINE L1 4029 5350 -796 197 83 28 0 chr13 52768045 52768081 -49105088 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2624 83 2 74 chr13 52768137 52768569 -49104600 - L1PA8A LINE L1 -3 6128 5728 5375 121 7 2 chr13 52768570 52769389 -49103780 + L1PA13 LINE L1 5338 6160 -3 186 208 0 0 chr13 52769423 52769471 -49103698 + T-rich Low_complexity Low_complexity 1 48 0 743 220 16 0 chr13 52769514 52769700 -49103469 + MER63 DNA MER1_type 1 189 -872 761 163 0 0 chr13 52769821 52769962 -49103207 + AluJb SINE Alu 1 141 -171 395 191 13 108 chr13 52770008 52770165 -49103004 + L1M4 LINE L1 4600 4741 -1405 4687 174 22 23 chr13 52770194 52770491 -49102678 - L1PA13 LINE L1 -45 6118 5822 2361 133 11 3 chr13 52770491 52770852 -49102317 + THE1B LTR MaLR 1 364 0 9394 114 48 31 chr13 52770852 52772406 -49100763 + THE1B-int LTR MaLR 1 1580 0 2225 138 14 8 chr13 52772406 52772768 -49100401 + THE1B LTR MaLR 1 364 0 4687 174 22 23 chr13 52772768 52773805 -49099364 - L1PA13 LINE L1 -338 5825 4780 718 249 27 11 chr13 52773806 52773991 -49099178 + L1M4 LINE L1 4020 4207 -1939 979 245 34 4 chr13 52774006 52774275 -49098894 + MER63 DNA MER1_type 653 929 -131 21 57 0 0 chr13 52777330 52777365 -49095804 + AT_rich Low_complexity Low_complexity 1 35 0 207 216 20 0 chr13 52777526 52777570 -49095599 + (TA)n Simple_repeat Simple_repeat 2 49 -4 937 198 0 0 chr13 52777570 52777732 -49095437 - FAM SINE Alu -13 162 1 207 216 20 0 chr13 52777732 52777738 -49095431 + (TA)n Simple_repeat Simple_repeat 49 53 0 23 33 0 0 chr13 52778697 52778727 -49094442 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 52778975 52779024 -49094145 + AT_rich Low_complexity Low_complexity 1 49 0 485 259 42 47 chr13 52779112 52779302 -49093867 - L1MC/D LINE L1 -2319 5489 5299 2035 107 53 13 chr13 52779302 52779602 -49093567 + AluSx SINE Alu 1 312 0 485 259 42 47 chr13 52779602 52779647 -49093522 - L1MC/D LINE L1 -2509 5299 5255 3642 210 41 25 chr13 52780042 52781445 -49091724 - L1PB4 LINE L1 -3 6153 4728 * 5065 219 37 54 chr13 52781444 52783032 -49090137 + L1 LINE L1 2511 4071 -2075 22 0 0 0 chr13 52783379 52783401 -49089768 + AT_rich Low_complexity Low_complexity 1 22 0 395 244 0 0 chr13 52784414 52784496 -49088673 - L1MC/D LINE L1 -575 5769 5688 270 143 0 0 chr13 52784554 52784610 -49088559 + L1MC4 LINE L1 6648 6703 -1339 371 67 0 33 chr13 52784615 52784675 -49088494 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 1797 152 82 20 chr13 52784787 52785130 -49088039 + THE1B LTR MaLR 1 364 0 1763 179 129 5 chr13 52785383 52785764 -49087405 + MSTA LTR MaLR 1 428 0 8413 150 24 39 chr13 52785766 52787367 -49085802 + MSTA-int LTR MaLR 3 1579 -1 1747 192 119 8 chr13 52787368 52787753 -49085416 + MSTA LTR MaLR 1 428 0 2467 187 45 26 chr13 52787812 52788385 -49084784 + LTR60 LTR ERV1 1 584 -2 294 29 0 0 chr13 52788802 52788837 -49084332 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr13 52790559 52790591 -49082578 + AT_rich Low_complexity Low_complexity 1 32 0 206 333 12 12 chr13 52792033 52792114 -49081055 + L2 LINE L2 1982 2062 -1252 550 52 0 0 chr13 52792451 52792528 -49080641 - L1PA3 LINE L1 0 6155 6079 457 68 41 0 chr13 52792612 52792685 -49080484 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 271 274 97 26 chr13 52793410 52793523 -49079646 - MER5C DNA MER1_type -202 122 2 2026 131 7 10 chr13 52793541 52793847 -49079322 - AluSx SINE Alu -7 305 1 1479 244 81 44 chr13 52794697 52795202 -49077967 - MER68 LTR ERV1 -38 524 1 1226 290 78 10 chr13 52795715 52796225 -49076944 + ERVL-F LTR ERVL 4953 5497 -267 22 0 0 0 chr13 52796374 52796396 -49076773 + AT_rich Low_complexity Low_complexity 1 22 0 2719 185 35 12 chr13 52796396 52796582 -49076587 + Tigger7 DNA MER2_type 2 182 -551 2164 120 0 19 chr13 52796582 52796899 -49076270 - AluSq SINE Alu -2 311 1 2719 185 35 12 chr13 52796899 52797220 -49075949 + Tigger7 DNA MER2_type 182 521 -212 574 167 22 0 chr13 52797219 52797309 -49075860 + Tigger7 DNA MER2_type 2396 2487 0 * 456 344 86 58 chr13 52797431 52797917 -49075252 + MLT2F LTR ERVL 1 500 -163 396 303 31 53 chr13 52797990 52798158 -49075011 + MIR SINE MIR 47 211 -51 21 0 0 0 chr13 52798500 52798521 -49074648 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 52800233 52800254 -49072915 + AT_rich Low_complexity Low_complexity 1 21 0 214 327 27 64 chr13 52800527 52800637 -49072532 - MIR SINE MIR -69 139 34 969 204 53 19 chr13 52800737 52801002 -49072167 - L1MA4A LINE L1 -1 7004 6731 396 82 123 27 chr13 52801002 52801075 -49072094 + THE1C LTR MaLR 1 80 -295 12670 213 32 11 chr13 52801077 52804456 -49068713 - L1MA4A LINE L1 -613 6392 2944 2012 264 15 2 chr13 52804571 52805048 -49068121 - L1MA4A LINE L1 -6363 486 4 373 370 104 27 chr13 52805303 52806263 -49066906 + L1M2 LINE L1 27 1320 -5889 309 269 26 0 chr13 52806315 52806393 -49066776 + L1PBb LINE L1 1856 1935 -5273 * 692 257 54 43 chr13 52806369 52806649 -49066520 + L1PBb LINE L1 1696 1978 -5231 3612 60 4 2 chr13 52806676 52807144 -49066025 + L1PA7 LINE L1 5682 6150 -4 1569 257 45 10 chr13 52807147 52807656 -49065513 + L1 LINE L1 2181 2707 -3439 254 148 66 0 chr13 52807682 52807743 -49065426 + (CTATA)n Simple_repeat Simple_repeat 1 65 0 2304 242 41 89 chr13 52807772 52807915 -49065254 + L1 LINE L1 2562 2710 -3436 1702 124 49 4 chr13 52807915 52808182 -49064987 - AluSx SINE Alu -13 299 21 2304 242 41 89 chr13 52808182 52809109 -49064060 + L1 LINE L1 2710 3581 -2565 233 146 0 0 chr13 52809123 52809164 -49064005 + LTR66 LTR ERVL 398 438 -172 197 122 49 0 chr13 52809181 52809222 -49063947 + (CATA)n Simple_repeat Simple_repeat 2 44 0 25 65 0 0 chr13 52809305 52809351 -49063818 + AT_rich Low_complexity Low_complexity 1 46 0 601 303 11 11 chr13 52810604 52810792 -49062377 + MLT1I LTR MaLR 26 213 -196 840 168 0 0 chr13 52811623 52811766 -49061403 + FLAM_C SINE Alu 1 143 0 1111 128 28 28 chr13 52811956 52812174 -49060995 - L1MA4 LINE L1 -4 6296 6079 22 21 0 62 chr13 52812943 52812991 -49060178 + AT_rich Low_complexity Low_complexity 1 45 0 1575 266 20 36 chr13 52813298 52813798 -49059371 - MLT1D LTR MaLR -13 492 1 226 279 9 36 chr13 52814848 52814959 -49058210 - L1MEd LINE L1 -4911 1208 1101 505 320 154 17 chr13 52814988 52815430 -49057739 + MLT1G LTR MaLR 40 523 -67 2129 93 7 3 chr13 52817353 52817663 -49055506 - AluY SINE Alu 0 311 1 1950 100 0 0 chr13 52817755 52818024 -49055145 + AluY SINE Alu 43 311 0 393 314 94 20 chr13 52818043 52818499 -49054670 + L1MEc LINE L1 1334 1823 -4573 309 304 140 31 chr13 52818526 52818875 -49054294 + L1MEc LINE L1 1874 2260 -4136 214 421 45 42 chr13 52819257 52819611 -49053558 - L2 LINE L2 -22 3250 2896 23 54 0 0 chr13 52820184 52820221 -49052948 + AT_rich Low_complexity Low_complexity 1 37 0 696 273 125 26 chr13 52821034 52821675 -49051494 - L1M4 LINE L1 -2337 3809 3106 916 254 54 45 chr13 52821699 52822183 -49050986 - L1M4 LINE L1 -3114 3032 2545 569 215 80 37 chr13 52822549 52822712 -49050457 + MER3 DNA MER1_type 28 197 -12 21 57 0 0 chr13 52823353 52823388 -49049781 + AT_rich Low_complexity Low_complexity 1 35 0 250 255 32 0 chr13 52823646 52823740 -49049429 + MER69 DNA AcHobo 2416 2512 -14 36 23 0 0 chr13 52824203 52824246 -49048923 + AT_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr13 52825312 52825343 -49047826 + AT_rich Low_complexity Low_complexity 1 31 0 2204 104 0 3 chr13 52825366 52825663 -49047506 - AluSg SINE Alu -14 296 1 865 238 52 52 chr13 52825736 52826026 -49047143 - MER54A LTR ERVL -3 898 609 845 202 6 0 chr13 52826152 52826320 -49046849 - MER54A LTR ERVL -732 169 1 1467 239 138 17 chr13 52826396 52826860 -49046309 + MLT2B1 LTR ERVL 1 520 0 1551 192 35 114 chr13 52829278 52829882 -49043287 - LTR10A LTR ERV1 -42 567 12 11438 155 32 40 chr13 52829891 52833611 -49039558 - Harlequin LTR ERV1 -2 6647 1218 2420 119 15 36 chr13 52833605 52834086 -49039083 - HERVI LTR ERV1 -5559 1337 703 * 653 145 43 8 chr13 52834086 52834203 -49038966 - HERVI LTR ERV1 -5198 2587 2467 4150 84 50 2 chr13 52834223 52834803 -49038366 - LTR14B LTR ERVK 0 608 1 2620 174 27 9 chr13 52834806 52835353 -49037816 - L1M2 LINE L1 -481 5810 5254 22 35 0 0 chr13 52835572 52835601 -49037568 + AT_rich Low_complexity Low_complexity 1 29 0 195 417 15 8 chr13 52835660 52835792 -49037377 + MER5A DNA MER1_type 56 188 -1 1602 199 42 156 chr13 52835962 52836745 -49036424 + LTR8A LTR ERV1 34 727 0 544 211 68 49 chr13 52837517 52837895 -49035274 - L1MDa LINE L1 -3892 2648 2377 332 285 43 91 chr13 52838392 52838767 -49034402 - L1MDa LINE L1 -6168 372 16 305 335 96 6 chr13 52838778 52838945 -49034224 - L1MEc LINE L1 -4534 1862 1681 2976 110 60 54 chr13 52838949 52839484 -49033685 + LTR10A LTR ERV1 8 545 -64 548 284 121 45 chr13 52839509 52840570 -49032599 - L1MEc LINE L1 -4709 1687 547 22 0 0 0 chr13 52840617 52840639 -49032530 + AT_rich Low_complexity Low_complexity 1 22 0 406 291 75 55 chr13 52841159 52841413 -49031756 - L1ME1 LINE L1 -108 6058 5800 1877 179 8 23 chr13 52841442 52841794 -49031375 + MER7A DNA MER2_type 2 346 0 460 270 22 11 chr13 52841795 52841980 -49031189 - L1ME1 LINE L1 -1197 4949 4763 * 691 288 46 20 chr13 52841978 52842284 -49030885 - L1ME1 LINE L1 -1729 4417 4104 423 318 23 41 chr13 52842290 52842510 -49030659 - L1M4 LINE L1 -1779 4367 4152 5003 180 22 66 chr13 52842523 52844822 -49028347 - L1MA3 LINE L1 0 6305 4120 2158 166 43 17 chr13 52844822 52845239 -49027930 + MSTA LTR MaLR 1 428 0 514 167 33 0 chr13 52845281 52845371 -49027798 + MSTA-int LTR MaLR 864 956 -695 7804 181 28 3 chr13 52845415 52846803 -49026366 + MSTA-int LTR MaLR 33 1455 -196 278 278 0 22 chr13 52847266 52847356 -49025813 + (TATG)n Simple_repeat Simple_repeat 2 89 0 1129 139 0 5 chr13 52848443 52848630 -49024539 + MSTA-int LTR MaLR 1450 1635 -16 2337 154 47 2 chr13 52848647 52849055 -49024114 + MSTA LTR MaLR 3 428 0 6409 213 50 55 chr13 52849055 52849327 -49023842 - L1MA3 LINE L1 -2022 4124 3852 2114 179 33 17 chr13 52849327 52849746 -49023423 - MSTB LTR MaLR 0 426 1 6409 213 50 55 chr13 52849746 52851432 -49021737 - L1MA3 LINE L1 -2294 3852 2176 3927 167 30 55 chr13 52851457 52851569 -49021600 - L1PB4 LINE L1 -32 6124 6011 2332 87 7 7 chr13 52851569 52851879 -49021290 - AluY SINE Alu -1 310 1 3927 167 30 55 chr13 52851879 52852099 -49021070 - L1PB4 LINE L1 -145 6011 5787 1074 137 0 0 chr13 52852099 52852304 -49020865 + (TA)n Simple_repeat Simple_repeat 1 205 0 3927 167 30 55 chr13 52852304 52852920 -49020249 - L1PB4 LINE L1 -369 5787 5199 3208 29 0 0 chr13 52853484 52853863 -49019306 + L1PA3 LINE L1 5777 6155 0 21 36 0 0 chr13 52854383 52854411 -49018758 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr13 52854522 52854545 -49018624 + (A)n Simple_repeat Simple_repeat 1 23 0 1049 128 6 17 chr13 52854743 52854923 -49018246 + THE1C-int LTR MaLR 1403 1580 0 2121 150 33 8 chr13 52854923 52855289 -49017880 + THE1C LTR MaLR 1 375 0 192 333 81 24 chr13 52855299 52855422 -49017747 - L2 LINE L2 -348 2966 2837 746 301 106 45 chr13 52855518 52856186 -49016983 + L1ME LINE L1 245 953 -5117 27 0 0 0 chr13 52856895 52856922 -49016247 + AT_rich Low_complexity Low_complexity 1 27 0 1299 231 17 10 chr13 52857301 52857599 -49015570 + AluJo SINE Alu 2 301 -11 323 198 181 9 chr13 52858027 52858143 -49015026 + MLT1C LTR MaLR 57 192 -313 543 241 8 23 chr13 52858253 52858386 -49014783 + MLT1C LTR MaLR 335 465 -2 348 250 148 62 chr13 52860250 52860283 -49012886 - MER5A DNA MER1_type 0 189 160 2200 173 50 5 chr13 52860283 52860723 -49012446 - LOR1b LTR ERV1 0 461 2 348 250 148 62 chr13 52860723 52860760 -49012409 - MER5A DNA MER1_type -29 160 128 2208 81 3 34 chr13 52860760 52861081 -49012088 + AluSp SINE Alu 2 312 -1 348 250 148 62 chr13 52861081 52861137 -49012032 - MER5A DNA MER1_type -61 128 51 28 61 0 0 chr13 52861188 52861237 -49011932 + AT_rich Low_complexity Low_complexity 1 49 0 25 90 0 0 chr13 52861298 52861365 -49011804 + AT_rich Low_complexity Low_complexity 1 67 0 25 0 0 0 chr13 52861574 52861599 -49011570 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr13 52862692 52862732 -49010437 + AT_rich Low_complexity Low_complexity 1 40 0 24 100 0 0 chr13 52863066 52863146 -49010023 + AT_rich Low_complexity Low_complexity 1 80 0 2162 76 21 0 chr13 52863511 52863802 -49009367 - AluSg SINE Alu -13 297 1 2396 159 82 82 chr13 52863993 52864684 -49008485 - LTR8 LTR ERV1 0 691 1 271 234 52 104 chr13 52865364 52865518 -49007651 + L1MEc LINE L1 35 180 -6216 213 197 0 0 chr13 52865531 52865592 -49007577 + (TATG)n Simple_repeat Simple_repeat 1 61 0 272 349 48 0 chr13 52865624 52865790 -49007379 + L1MEc LINE L1 231 404 -5992 695 265 108 54 chr13 52865846 52866216 -49006953 - L1MEc LINE L1 -1969 4413 4024 285 29 0 0 chr13 52866218 52866252 -49006917 + (TG)n Simple_repeat Simple_repeat 2 35 0 1528 213 70 0 chr13 52866257 52866585 -49006584 - MLT1A1 LTR MaLR -2 363 13 197 176 35 12 chr13 52866595 52866680 -49006489 + (TA)n Simple_repeat Simple_repeat 1 87 0 407 299 70 7 chr13 52866767 52867065 -49006104 - L1MEc LINE L1 -2373 4009 3693 * 641 291 14 0 chr13 52867063 52867286 -49005883 - L1MEc LINE L1 -3060 3322 3097 554 324 64 37 chr13 52867433 52868103 -49005066 - L1MEc LINE L1 -4492 2071 1384 * 985 237 54 35 chr13 52868102 52868517 -49004652 - L1MEc LINE L1 -3629 2753 2327 231 36 0 0 chr13 52868517 52868545 -49004624 + (TG)n Simple_repeat Simple_repeat 1 28 0 985 237 54 35 chr13 52868545 52868603 -49004566 - L1MEc LINE L1 -4055 2327 2272 186 133 0 0 chr13 52868630 52868660 -49004509 + (TG)n Simple_repeat Simple_repeat 2 31 0 447 310 95 58 chr13 52868706 52869255 -49003914 - L1MEc LINE L1 -5468 904 336 251 265 0 0 chr13 52870122 52870190 -49002979 + LTR65 LTR ERV1 5 72 -597 628 333 8 24 chr13 52870751 52871000 -49002169 + MIR SINE MIR 1 245 -17 692 169 42 42 chr13 52871274 52871440 -49001729 - L1MA9 LINE L1 -11 6301 6136 23 0 0 0 chr13 52873187 52873210 -48999959 + AT_rich Low_complexity Low_complexity 1 23 0 917 319 87 64 chr13 52873553 52873908 -48999261 + L1MDb LINE L1 149 523 -6020 2438 74 0 3 chr13 52873908 52874220 -48998949 + AluY SINE Alu 1 311 0 917 319 87 64 chr13 52874220 52874426 -48998743 + L1MDb LINE L1 523 723 -5820 1536 234 11 31 chr13 52874442 52874894 -48998275 + L1MDb LINE L1 878 1320 -5223 308 306 24 38 chr13 52874997 52875267 -48997902 + L1MDb LINE L1 1339 1597 -4943 * 1571 234 79 69 chr13 52875264 52875733 -48997436 + L1MDb LINE L1 1864 2342 -4198 1295 220 7 0 chr13 52875733 52876010 -48997159 + L1PB4 LINE L1 5865 6143 -13 1571 234 79 69 chr13 52876010 52876370 -48996799 + L1MDb LINE L1 2342 2697 -3843 1119 278 42 22 chr13 52876383 52877488 -48995681 + L1MDb LINE L1 2833 4087 -2453 1669 213 58 36 chr13 52877488 52877934 -48995235 - MSTB2 LTR MaLR 0 457 2 1119 278 42 22 chr13 52877934 52877995 -48995174 + L1MDb LINE L1 4087 4145 -2395 309 384 56 11 chr13 52879251 52879535 -48993634 + MLT1K LTR MaLR 179 475 -113 353 284 78 0 chr13 52880412 52880514 -48992655 - MER63D DNA MER1_type -1 1060 951 948 198 96 0 chr13 52880520 52880717 -48992452 + L1MB3 LINE L1 24 239 -6145 3840 217 40 39 chr13 52880721 52883196 -48989973 + L1MB3 LINE L1 3746 6416 -3 1129 237 47 122 chr13 52883210 52883793 -48989376 - MER63D DNA MER1_type -102 959 325 1703 158 34 67 chr13 52883793 52884179 -48988990 + THE1C LTR MaLR 1 373 -2 1129 237 47 122 chr13 52884179 52884429 -48988740 - MER63D DNA MER1_type -736 325 58 213 203 68 0 chr13 52884437 52884496 -48988673 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 670 195 8 0 chr13 52884553 52884676 -48988493 - FLAM_C SINE Alu -19 124 1 23 54 0 0 chr13 52885479 52885516 -48987653 + AT_rich Low_complexity Low_complexity 1 37 0 1174 176 52 28 chr13 52885554 52885736 -48987433 - AluSx SINE Alu -1 311 120 2248 105 0 0 chr13 52885736 52886032 -48987137 - AluSc SINE Alu -13 296 1 1174 176 52 28 chr13 52886032 52886099 -48987070 - AluSx SINE Alu -192 120 56 291 350 90 53 chr13 52886241 52886809 -48986360 + L2 LINE L2 2179 2767 -547 196 297 180 31 chr13 52887064 52887192 -48985977 + L2 LINE L2 3167 3313 0 22 80 0 0 chr13 52888301 52888351 -48984818 + AT_rich Low_complexity Low_complexity 1 50 0 30 27 0 0 chr13 52888782 52888819 -48984350 + AT_rich Low_complexity Low_complexity 1 37 0 298 342 45 65 chr13 52889108 52889526 -48983643 - LTR16B LTR ERVL -17 447 38 965 247 58 80 chr13 52889755 52890205 -48982964 + L1MCb LINE L1 10 449 -5596 400 335 0 26 chr13 52890401 52890556 -48982613 + L1MCb LINE L1 553 703 -5342 330 313 101 5 chr13 52890715 52890913 -48982256 + L1MCb LINE L1 893 1109 -5455 * 636 234 167 24 chr13 52890908 52891425 -48981744 + L1MCb LINE L1 1566 2245 -4319 1212 223 36 7 chr13 52891464 52891769 -48981400 - L1MA9 LINE L1 -320 5992 5679 231 200 15 15 chr13 52891816 52891881 -48981288 - L1PB4 LINE L1 -3 6153 6089 616 166 72 22 chr13 52891982 52892015 -48981154 + L1MA7 LINE L1 6120 6150 -141 1580 167 63 36 chr13 52892015 52892380 -48980789 + THE1C LTR MaLR 1 375 0 616 166 72 22 chr13 52892380 52892485 -48980684 + L1MA7 LINE L1 6150 6265 -26 445 294 11 6 chr13 52892495 52892675 -48980494 + L1MCb LINE L1 2620 2800 -3764 1546 154 3 47 chr13 52892687 52892985 -48980184 + AluJb SINE Alu 16 300 -12 473 16 63 0 chr13 52893079 52893142 -48980027 - MLT2A1 LTR ERVL -2 451 385 36 40 0 0 chr13 52893169 52893219 -48979950 + AT_rich Low_complexity Low_complexity 1 50 0 216 108 32 54 chr13 52893219 52893312 -48979857 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 2801 96 10 22 chr13 52893333 52893738 -48979431 - MLT2A1 LTR ERVL -44 400 1 1192 308 41 11 chr13 52893739 52894300 -48978869 + L1MCb LINE L1 2874 3451 -3113 2412 273 73 29 chr13 52894302 52895622 -48977547 + L1MCb LINE L1 3478 4856 -1708 454 272 68 41 chr13 52895646 52895959 -48977210 - L1MC3 LINE L1 -148 6018 5788 330 218 27 55 chr13 52895961 52896071 -48977098 - L1MC3 LINE L1 -1606 4540 4434 257 289 16 8 chr13 52896075 52896203 -48976966 + (TA)n Simple_repeat Simple_repeat 2 130 0 430 237 0 17 chr13 52896281 52896399 -48976770 - L1MC3 LINE L1 -1858 4288 4173 277 267 47 0 chr13 52896442 52896528 -48976641 - L1MC3 LINE L1 -2779 3367 3278 203 401 51 29 chr13 52897014 52897151 -48976018 + L2 LINE L2 3116 3255 -17 192 284 116 84 chr13 52897355 52897545 -48975624 + MIR SINE MIR 12 207 -55 357 301 0 19 chr13 52897578 52897681 -48975488 + CT-rich Low_complexity Low_complexity 5 105 0 249 33 0 0 chr13 52897866 52897896 -48975273 + (TC)n Simple_repeat Simple_repeat 1 30 0 184 182 0 30 chr13 52898473 52898539 -48974630 + (TAA)n Simple_repeat Simple_repeat 3 66 0 340 269 141 22 chr13 52898613 52898840 -48974329 - MER69 DNA AcHobo -1 2525 2272 324 328 83 42 chr13 52899083 52899275 -48973894 + L2 LINE L2 2685 2884 -430 226 319 52 52 chr13 52900310 52900445 -48972724 + L2 LINE L2 3169 3303 -10 201 94 0 0 chr13 52901604 52901636 -48971533 + (CA)n Simple_repeat Simple_repeat 1 32 0 182 269 118 42 chr13 52902549 52902668 -48970501 + MIR SINE MIR 126 253 -9 299 287 71 35 chr13 52902837 52903182 -48969987 + L1MDa LINE L1 1672 1991 -910 331 386 47 14 chr13 52903479 52903694 -48969475 + MLT1I LTR MaLR 110 331 -78 256 214 36 27 chr13 52903763 52903875 -48969294 + L1MDa LINE L1 2523 2635 -4086 527 240 78 7 chr13 52904243 52904397 -48968772 - L1MC4 LINE L1 0 8042 7878 251 211 19 0 chr13 52904402 52904454 -48968715 - L1MC4 LINE L1 -354 7688 7636 312 266 52 32 chr13 52905041 52905195 -48967974 - L1ME4a LINE L1 -8 6113 5957 230 188 0 21 chr13 52905209 52905257 -48967912 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 28 0 0 0 chr13 52905278 52905306 -48967863 + AT_rich Low_complexity Low_complexity 1 28 0 1915 149 3 0 chr13 52905307 52905595 -48967574 - AluSx SINE Alu -23 289 1 25 31 0 0 chr13 52906151 52906183 -48966986 + AT_rich Low_complexity Low_complexity 1 32 0 414 293 17 0 chr13 52906545 52906661 -48966508 + MIR SINE MIR 74 191 -71 577 146 57 32 chr13 52906896 52907019 -48966150 - AluJ SINE Alu 0 312 187 814 142 30 8 chr13 52907026 52907160 -48966009 - AluJ SINE Alu -175 137 1 274 336 25 33 chr13 52907492 52907614 -48965555 + MIR SINE MIR 19 139 -123 7709 182 29 27 chr13 52907712 52910446 -48962723 - L1MA5 LINE L1 -4 6296 3554 4473 128 35 3 chr13 52910448 52911173 -48961996 + L1PA15 LINE L1 5412 6159 -6 869 273 109 11 chr13 52911187 52911775 -48961394 + L1MD3 LINE L1 6588 7090 -695 493 236 24 8 chr13 52911776 52911899 -48961270 + MLT1F1 LTR MaLR 1 125 -442 1382 250 148 6 chr13 52911923 52912403 -48960766 + L1MD3 LINE L1 7439 7986 -9 748 247 154 117 chr13 52912899 52913955 -48959214 - MER52A LTR ERV1 0 1755 3 217 159 32 0 chr13 52914183 52914246 -48958923 + (TA)n Simple_repeat Simple_repeat 2 66 0 213 39 0 0 chr13 52917049 52917075 -48956094 + (A)n Simple_repeat Simple_repeat 1 26 0 1667 174 7 0 chr13 52917542 52917847 -48955322 - AluSx SINE Alu -5 307 1 1585 183 0 29 chr13 52918165 52918477 -48954692 + AluSq SINE Alu 2 304 -9 25 0 0 0 chr13 52918775 52918800 -48954369 + AT_rich Low_complexity Low_complexity 1 25 0 30 83 0 0 chr13 52920085 52920157 -48953012 + AT_rich Low_complexity Low_complexity 1 72 0 2858 228 46 23 chr13 52921224 52922008 -48951161 - L1MC3 LINE L1 0 8203 7402 1948 239 66 61 chr13 52922036 52923297 -48949872 - L1MC3 LINE L1 -743 5821 5114 321 271 10 67 chr13 52923276 52923478 -48949691 - L1MC3 LINE L1 -5874 346 5 * 22 103 0 0 chr13 52924515 52924593 -48948576 + AT_rich Low_complexity Low_complexity 1 78 0 2391 124 36 10 chr13 52925480 52925892 -48947277 + L1MA3 LINE L1 5883 6305 0 412 233 14 0 chr13 52927071 52927217 -48945952 + (TA)n Simple_repeat Simple_repeat 1 148 0 208 121 0 0 chr13 52927539 52927572 -48945597 + (CA)n Simple_repeat Simple_repeat 2 34 0 470 48 16 0 chr13 52927611 52927674 -48945495 - MADE1 DNA Mariner -16 64 1 21 0 0 0 chr13 52928016 52928037 -48945132 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr13 52928835 52928861 -48944308 + (CA)n Simple_repeat Simple_repeat 2 27 0 282 142 40 4 chr13 52929281 52929343 -48943826 - L1PA15-16 LINE L1 -3963 2886 2817 27 0 0 0 chr13 52929479 52929506 -48943663 + AT_rich Low_complexity Low_complexity 1 27 0 1259 167 72 0 chr13 52929506 52929727 -48943442 - L1PA15-16 LINE L1 -4817 2022 1786 * 15129 200 25 18 chr13 52929720 52933649 -48939520 + L1PA7 LINE L1 2156 6106 -48 1324 239 104 19 chr13 52933906 52934375 -48938794 + MER67D LTR ERV1 3 511 -3 21 0 0 0 chr13 52934719 52934740 -48938429 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr13 52935131 52935162 -48938007 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 264 30 0 0 chr13 52935736 52935769 -48937400 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 378 242 15 68 chr13 52935947 52936079 -48937090 - L2 LINE L2 0 3313 3189 547 313 28 0 chr13 52936110 52936289 -48936880 + MLT1H LTR MaLR 117 300 -249 36 94 0 0 chr13 52936881 52936987 -48936182 + AT_rich Low_complexity Low_complexity 1 106 0 2368 131 27 5 chr13 52937067 52937434 -48935735 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr13 52937962 52937991 -48935178 + AT_rich Low_complexity Low_complexity 1 29 0 2494 58 3 0 chr13 52938845 52939155 -48934014 - AluY SINE Alu 0 311 1 29 47 0 0 chr13 52939747 52939790 -48933379 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr13 52939955 52939990 -48933179 + AT_rich Low_complexity Low_complexity 1 35 0 200 271 17 0 chr13 52940875 52940934 -48932235 + CT-rich Low_complexity Low_complexity 2 61 0 234 116 0 0 chr13 52940939 52940982 -48932187 + (TC)n Simple_repeat Simple_repeat 2 44 0 2447 53 0 7 chr13 52941541 52941842 -48931327 - AluY SINE Alu -12 299 1 276 254 16 0 chr13 52942634 52942697 -48930472 + MLT1H LTR MaLR 2 65 -484 511 352 75 29 chr13 52942697 52943081 -48930088 + MLT1H LTR MaLR 38 439 -110 27 0 0 0 chr13 52943198 52943225 -48929944 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 52943333 52943363 -48929806 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 52943684 52943705 -48929464 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr13 52943859 52943891 -48929278 + (TC)n Simple_repeat Simple_repeat 2 33 0 789 230 26 96 chr13 52944247 52944590 -48928579 + MER89-int LTR ERV1 2225 2543 -4258 1484 278 62 27 chr13 52944634 52945328 -48927841 + MER89-int LTR ERV1 148 3005 -3796 471 336 60 8 chr13 52946337 52946572 -48926597 + L2 LINE L2 2820 3066 -247 189 0 0 0 chr13 52947462 52947483 -48925686 + (TG)n Simple_repeat Simple_repeat 1 21 0 4526 73 30 15 chr13 52947835 52948866 -48924303 - MER11A LTR ERVK 0 1266 1 22 0 0 0 chr13 52948872 52948894 -48924275 + AT_rich Low_complexity Low_complexity 1 22 0 453 334 124 58 chr13 52950347 52950893 -48922276 - L2 LINE L2 -2 3311 2710 2028 120 16 7 chr13 52951038 52951347 -48921822 + AluSq SINE Alu 1 312 -1 2309 92 6 3 chr13 52952104 52952430 -48920739 + L1P4 LINE L1 5408 5734 -429 1440 114 14 5 chr13 52952768 52952979 -48920190 + AluSg/x SINE Alu 85 297 -15 233 277 99 122 chr13 52953572 52953915 -48919254 + MLT1J LTR MaLR 97 431 -80 2087 112 0 0 chr13 52955388 52955693 -48917476 + AluSc SINE Alu 1 305 0 542 262 125 16 chr13 52956121 52956369 -48916800 + MER5C DNA MER1_type 7 281 -43 261 0 0 0 chr13 52956592 52956621 -48916548 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1347 247 64 64 chr13 52957444 52957963 -48915206 - LTR40a LTR ERVL 0 519 1 306 335 27 49 chr13 52958359 52958544 -48914625 + MIR SINE MIR 82 262 0 312 232 0 24 chr13 52959373 52959455 -48913714 - MER90 LTR ERV1 -6 569 490 195 42 0 0 chr13 52959455 52959479 -48913690 + (CATA)n Simple_repeat Simple_repeat 4 27 0 259 251 103 57 chr13 52959657 52959832 -48913337 + L1ME3A LINE L1 5769 5951 -219 10271 36 6 0 chr13 52960325 52961580 -48911589 - L1P LINE L1 -1328 4818 3556 7292 39 2 7 chr13 52961580 52962568 -48910601 + L1PA4 LINE L1 5172 6155 0 566 271 12 12 chr13 52962568 52962734 -48910435 + L1MC4a LINE L1 5725 5890 -1918 21 36 0 0 chr13 52963068 52963096 -48910073 + AT_rich Low_complexity Low_complexity 1 28 0 2151 116 3 3 chr13 52964875 52965177 -48907992 - AluSp SINE Alu -11 302 1 230 216 0 20 chr13 52965737 52965788 -48907381 + MLT2C1 LTR ERVL 225 274 -140 351 59 88 0 chr13 52965792 52965860 -48907309 + CT-rich Low_complexity Low_complexity 4 77 0 982 130 11 0 chr13 52965875 52966052 -48907117 + CT-rich Low_complexity Low_complexity 2 180 0 1854 101 17 27 chr13 52966052 52966349 -48906820 - AluY SINE Alu -17 294 1 1039 84 0 0 chr13 52966359 52966490 -48906679 - AluY SINE Alu -179 132 2 2026 83 0 31 chr13 52966490 52966779 -48906390 - AluSc SINE Alu -29 280 1 507 95 43 40 chr13 52966822 52966915 -48906254 + MLT2C1 LTR ERVL 307 554 0 896 208 6 0 chr13 52967243 52967411 -48905758 + L1MC/D LINE L1 5439 5607 -726 842 338 41 30 chr13 52967894 52968356 -48904813 - MER69 DNA AcHobo -2055 471 5 1207 219 21 0 chr13 52969132 52969212 -48903957 + AluJb SINE Alu 45 122 -190 180 0 0 0 chr13 52969212 52969232 -48903937 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1207 219 21 0 chr13 52969232 52969393 -48903776 + AluJb SINE Alu 122 291 -21 21 0 0 0 chr13 52970113 52970134 -48903035 + AT_rich Low_complexity Low_complexity 1 21 0 2159 126 7 0 chr13 52970266 52970576 -48902593 + AluSx SINE Alu 1 312 0 504 301 43 60 chr13 52970917 52971199 -48901970 + L3 LINE CR1 832 1108 -469 1904 239 24 9 chr13 52972763 52973182 -48899987 + MSTB LTR MaLR 2 426 0 648 220 7 7 chr13 52973546 52973687 -48899482 + L1PB4 LINE L1 6007 6147 -9 455 293 26 79 chr13 52973701 52973967 -48899202 + MIR SINE MIR 2 253 -9 261 344 55 6 chr13 52974382 52974565 -48898604 + L2 LINE L2 1818 2009 -1305 3725 187 32 43 chr13 52974613 52974862 -48898307 - L1MC1 LINE L1 -1 6332 6082 2458 53 7 0 chr13 52974862 52975166 -48898003 + AluY SINE Alu 1 306 -5 3725 187 32 43 chr13 52975166 52975749 -48897420 - L1MC1 LINE L1 -251 6082 5509 354 353 95 5 chr13 52976195 52976385 -48896784 - MIR SINE MIR -11 251 45 22 35 0 0 chr13 52976848 52976877 -48896292 + AT_rich Low_complexity Low_complexity 1 29 0 239 247 47 18 chr13 52977077 52977247 -48895922 + (TA)n Simple_repeat Simple_repeat 2 176 0 1946 253 42 32 chr13 52977248 52977777 -48895392 - MLT2B3 LTR ERVL -20 534 1 186 398 32 0 chr13 52977777 52977870 -48895299 + L2 LINE L2 2244 2339 -975 22 0 0 0 chr13 52978549 52978571 -48894598 + AT_rich Low_complexity Low_complexity 1 22 0 726 277 156 23 chr13 52978613 52979390 -48893779 - Charlie2a DNA MER1_type -62 2800 1921 3141 268 24 21 chr13 52979428 52980637 -48892532 + L1PA15-16 LINE L1 1982 3194 -3655 3106 253 15 9 chr13 52980623 52981476 -48891693 + L1PB4 LINE L1 1837 2694 -3452 * 1416 183 28 17 chr13 52981497 52981786 -48891383 + MSTB LTR MaLR 55 346 -80 2978 53 0 5 chr13 52981833 52982209 -48890960 - L1PA5 LINE L1 0 6154 5781 8667 47 0 1 chr13 52982209 52983466 -48889703 + L1P2 LINE L1 4316 5571 -583 8070 218 53 46 chr13 52983502 52984508 -48888661 + L1PB4 LINE L1 2735 3732 -2424 2558 143 21 5 chr13 52984508 52984927 -48888242 - MSTA LTR MaLR 0 428 3 8070 218 53 46 chr13 52984927 52986470 -48886699 + L1PB4 LINE L1 3732 5322 -834 2106 118 3 3 chr13 52986470 52986776 -48886393 + AluSq SINE Alu 3 308 -5 8070 218 53 46 chr13 52986776 52987483 -48885686 + L1PB4 LINE L1 5322 6022 -134 567 255 46 25 chr13 52987483 52987722 -48885447 - Charlie2a DNA MER1_type -1114 1748 1505 745 251 6 12 chr13 52987722 52987893 -48885276 - FRAM SINE Alu -2 174 5 1672 284 82 31 chr13 52987896 52988944 -48884225 - Charlie2a DNA MER1_type -1354 1508 408 872 243 53 4 chr13 52989124 52989371 -48883798 + L1MD3 LINE L1 7725 7983 -12 938 286 41 59 chr13 52989388 52989895 -48883274 - L1ME3A LINE L1 -90 6080 5583 180 77 0 0 chr13 52990047 52990073 -48883096 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1691 164 0 21 chr13 52990077 52990364 -48882805 - AluJo SINE Alu -31 281 1 212 182 0 18 chr13 52991121 52991176 -48881993 + GA-rich Low_complexity Low_complexity 2 55 0 250 211 22 33 chr13 52991229 52991319 -48881850 + L1MC4 LINE L1 6614 6702 -1340 246 311 0 0 chr13 52991276 52991366 -48881803 - L1MC4 LINE L1 -1339 6703 6614 * 5332 133 11 1 chr13 52991638 52992464 -48880705 + L1PA13 LINE L1 5325 6158 -5 230 183 17 17 chr13 52992608 52992668 -48880501 + (CA)n Simple_repeat Simple_repeat 1 60 0 21 0 0 0 chr13 52992808 52992829 -48880340 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr13 52993451 52993477 -48879692 + (TA)n Simple_repeat Simple_repeat 2 27 0 756 201 10 78 chr13 53093822 53094131 -48779038 + MER4-int LTR ERV1 3734 4021 -2577 * 1168 240 130 47 chr13 53094129 53094821 -48778348 + MER4-int LTR ERV1 3077 3479 -1457 2229 71 0 0 chr13 53094821 53095116 -48778053 - AluY SINE Alu -16 295 1 1168 240 130 47 chr13 53095116 53095143 -48778026 + MER4-int LTR ERV1 3479 3502 -1434 802 154 0 0 chr13 53095284 53095401 -48777768 - FLAM_C SINE Alu -17 126 10 1566 82 0 10 chr13 53095650 53095858 -48777311 + AluY SINE Alu 106 311 0 2779 222 29 50 chr13 53095948 53096926 -48776243 - MER65-int LTR ERV1 -2377 2494 1647 699 199 183 46 chr13 53096945 53097269 -48775900 - L1MA7 LINE L1 -10 6302 5953 * 1457 292 21 16 chr13 53097264 53097843 -48775326 - L1 LINE L1 -3106 4000 3419 398 88 15 0 chr13 53097848 53097916 -48775253 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 401 285 6 0 chr13 53097959 53098124 -48775045 + (TA)n Simple_repeat Simple_repeat 1 166 0 1857 216 21 28 chr13 53098135 53098561 -48774608 - MSTC LTR MaLR -2 426 4 2216 277 57 38 chr13 53098563 53100056 -48773113 - L1 LINE L1 -3713 3393 2154 1349 278 34 5 chr13 53100056 53100441 -48772728 - MSTD LTR MaLR 0 396 1 2216 277 57 38 chr13 53100441 53101258 -48771911 - L1 LINE L1 -4952 2154 1354 223 357 0 0 chr13 53101863 53101947 -48771222 + L2 LINE L2 2672 2755 -559 1428 339 78 59 chr13 53102093 53103437 -48769732 - L2 LINE L2 -424 2890 1521 5976 81 41 0 chr13 53103442 53104110 -48769059 + L1PA8A LINE L1 5099 5738 -393 396 0 0 0 chr13 53104110 53104154 -48769015 + (TA)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr13 53104153 53104175 -48768994 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 5976 81 41 0 chr13 53104154 53104479 -48768690 + L1PA8A LINE L1 5738 6103 -28 255 346 63 35 chr13 53104548 53104802 -48768367 - L2 LINE L2 -1817 1497 1237 572 296 91 93 chr13 53105321 53105761 -48767408 + MLT1H LTR MaLR 111 549 0 21 0 0 0 chr13 53107141 53107162 -48766007 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 53108427 53108450 -48764719 + AT_rich Low_complexity Low_complexity 1 23 0 182 250 0 0 chr13 53108855 53108899 -48764270 - L2 LINE L2 -1355 1959 1916 279 122 0 0 chr13 53108920 53108969 -48764200 + (CA)n Simple_repeat Simple_repeat 2 50 0 2255 109 0 25 chr13 53110485 53110805 -48762364 + AluSx SINE Alu 1 312 0 3357 147 35 64 chr13 53111399 53112233 -48760936 - LTR1 LTR ERV1 0 785 13 26 0 0 0 chr13 53112339 53112365 -48760804 + AT_rich Low_complexity Low_complexity 1 26 0 203 255 0 20 chr13 53114001 53114052 -48759117 + CT-rich Low_complexity Low_complexity 3 52 0 197 296 23 45 chr13 53114075 53114163 -48759006 - L2 LINE L2 -1 3271 3186 244 62 21 21 chr13 53115320 53115368 -48757801 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr13 53115513 53115534 -48757635 + AT_rich Low_complexity Low_complexity 1 21 0 10521 114 6 4 chr13 53116445 53118054 -48755115 - L1PA7 LINE L1 -2327 3819 2208 231 149 0 0 chr13 53118053 53118100 -48755069 + L1PA7 LINE L1 3837 3883 -2263 * 8581 95 9 17 chr13 53118100 53119788 -48753381 + L1PA7 LINE L1 4119 5771 -383 1987 141 10 0 chr13 53119788 53120087 -48753082 + AluSp SINE Alu 1 302 -11 8581 95 9 17 chr13 53120087 53120468 -48752701 + L1PA7 LINE L1 5771 6153 -1 323 270 33 116 chr13 53120492 53120707 -48752462 - L1M4 LINE L1 -2079 4067 3871 652 267 93 41 chr13 53120850 53121434 -48751735 - L1ME LINE L1 -5018 1052 500 2096 78 21 0 chr13 53123120 53123403 -48749766 - AluY SINE Alu -22 289 1 208 376 61 25 chr13 53123449 53123646 -48749523 - L2 LINE L2 -245 3068 2865 199 332 153 63 chr13 53124438 53124661 -48748508 - L2 LINE L2 -2486 828 586 217 228 41 24 chr13 53124836 53124959 -48748210 + (TTATA)n Simple_repeat Simple_repeat 4 128 0 333 206 0 33 chr13 53125493 53125585 -48747584 - L1MA10 LINE L1 -4 6330 6242 455 290 55 111 chr13 53125585 53125964 -48747205 + L2 LINE L2 2942 3299 -14 25 0 0 0 chr13 53129273 53129298 -48743871 + AT_rich Low_complexity Low_complexity 1 25 0 2460 218 43 43 chr13 53129518 53129879 -48743290 - MER82 DNA MER2_type 0 653 290 1453 189 10 30 chr13 53129879 53130176 -48742993 + AluSx SINE Alu 21 311 -1 2460 218 43 43 chr13 53130176 53130466 -48742703 - MER82 DNA MER2_type -362 291 2 1000 260 102 12 chr13 53131071 53131413 -48741756 - MLT1F LTR MaLR -2 540 168 198 347 105 0 chr13 53131416 53131511 -48741658 + L2 LINE L2 3160 3264 -49 1895 157 20 0 chr13 53131680 53131974 -48741195 - AluSx SINE Alu -7 305 6 384 337 47 77 chr13 53132006 53132410 -48740759 + L1MB2 LINE L1 2 393 -5498 6245 230 28 22 chr13 53132519 53134302 -48738867 + L1MB2 LINE L1 3445 5250 -745 2176 198 24 7 chr13 53134302 53134721 -48738448 - MSTB LTR MaLR 0 426 1 6245 230 28 22 chr13 53134721 53135446 -48737723 + L1MB2 LINE L1 5250 5969 -26 226 216 68 45 chr13 53135760 53135848 -48737321 + MIR SINE MIR 173 262 0 339 254 25 25 chr13 53136218 53136336 -48736833 - MER103 DNA DNA -8 158 41 36 23 0 0 chr13 53136582 53136625 -48736544 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 53137192 53137220 -48735949 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr13 53137670 53137705 -48735464 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 53138009 53138032 -48735137 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 53138057 53138085 -48735084 + AT_rich Low_complexity Low_complexity 1 28 0 246 354 106 35 chr13 53139472 53139848 -48733321 - L2 LINE L2 -89 3224 2822 538 268 89 87 chr13 53139995 53140487 -48732682 - L2 LINE L2 -779 2535 2043 214 153 34 0 chr13 53140535 53140594 -48732575 + (TA)n Simple_repeat Simple_repeat 2 62 0 8718 58 8 0 chr13 53140757 53142655 -48730514 - L1PA5 LINE L1 0 6154 4247 2102 108 7 3 chr13 53143589 53143884 -48729285 + AluSg SINE Alu 1 296 -14 583 271 0 0 chr13 53143995 53144124 -48729045 + MER94 DNA DNA 1 129 -5 11809 143 125 6 chr13 53144527 53146786 -48726383 - L1PBa LINE L1 -4335 2528 2 1941 179 44 0 chr13 53146795 53147158 -48726011 + MER57A LTR ERV1 25 403 0 357 284 71 7 chr13 53147303 53147444 -48725725 - LTR65 LTR ERV1 -6 663 514 405 279 57 32 chr13 53147619 53147777 -48725392 - LTR65 LTR ERV1 -506 163 2 500 264 0 0 chr13 53148312 53148433 -48724736 - MER69 DNA AcHobo -1096 130 10 6250 211 158 33 chr13 53148774 53150334 -48722835 + MER52A LTR ERV1 1 1755 0 1192 244 57 79 chr13 53151099 53151678 -48721491 - MER31-int LTR ERV1 -1200 3736 3171 508 186 20 7 chr13 53151944 53152078 -48721091 + L1MB1 LINE L1 6049 6167 -1 1312 209 13 39 chr13 53152412 53152719 -48720450 - MER101B LTR ERV1 -271 299 1 363 257 0 73 chr13 53152827 53152963 -48720206 - MER31-int LTR ERV1 -1887 3049 2924 268 321 36 15 chr13 53153394 53153531 -48719638 - MER31-int LTR ERV1 -2340 2596 2457 1329 174 0 0 chr13 53153604 53153816 -48719353 - Tigger3(Golem) DNA MER2_type 0 3029 2818 313 187 22 11 chr13 53153934 53154025 -48719144 - MER31-int LTR ERV1 -2629 2307 2216 634 274 40 5 chr13 53154126 53154349 -48718820 - MER31-int LTR ERV1 -3660 1276 1046 243 0 0 0 chr13 53154435 53154462 -48718707 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 53154573 53154594 -48718575 + AT_rich Low_complexity Low_complexity 1 21 0 285 159 63 16 chr13 53154825 53154888 -48718281 - MER92C LTR ERV1 -2 552 487 231 234 0 0 chr13 53155147 53155194 -48717975 - MER92B LTR ERV1 -589 47 1 695 309 112 20 chr13 53155194 53155705 -48717464 + L1ME2 LINE L1 5563 6120 -44 2117 113 0 26 chr13 53155708 53156017 -48717152 - AluSx SINE Alu -11 301 1 29 0 0 0 chr13 53156212 53156241 -48716928 + AT_rich Low_complexity Low_complexity 1 29 0 313 331 155 22 chr13 53156269 53156450 -48716719 + MIR SINE MIR 9 213 -49 360 172 26 5 chr13 53156559 53156662 -48716507 - L1MC4 LINE L1 0 8042 7696 1783 131 137 14 chr13 53157034 53157385 -48715784 - L1PA16 LINE L1 0 6166 5773 * 3141 179 48 22 chr13 53157369 53158525 -48714644 + L1PA16 LINE L1 4603 5784 -382 24 0 0 0 chr13 53160662 53160686 -48712483 + AT_rich Low_complexity Low_complexity 1 24 0 2689 163 94 22 chr13 53161865 53162363 -48710806 - MER7C DNA MER2_type -2437 591 48 7842 137 21 7 chr13 53162363 53163643 -48709526 - HSMAR2 DNA Mariner -1 1301 4 2689 163 94 22 chr13 53163643 53163695 -48709474 - MER7C DNA MER2_type -2980 48 1 23 33 0 0 chr13 53163911 53163941 -48709228 + AT_rich Low_complexity Low_complexity 1 30 0 232 208 21 0 chr13 53164832 53164880 -48708289 - MIR SINE MIR -10 252 204 2171 92 26 16 chr13 53165305 53165609 -48707560 - AluSc SINE Alu -2 307 1 275 319 42 42 chr13 53165821 53165940 -48707229 + MIR3 SINE MIR 65 183 -25 248 298 107 0 chr13 53167635 53167756 -48705413 - MIR SINE MIR 0 262 129 4020 40 57 30 chr13 53168733 53169003 -48704166 - LTR6B LTR ERV1 0 558 297 2844 3 0 0 chr13 53169003 53169314 -48703855 + AluYa5 SINE Alu 1 311 0 4020 40 57 30 chr13 53169314 53169586 -48703583 - LTR6B LTR ERV1 -261 297 1 632 378 117 20 chr13 53170632 53171438 -48701731 + L2 LINE L2 298 1181 -2133 353 356 65 23 chr13 53171468 53171684 -48701485 - MIR SINE MIR -30 232 8 694 220 13 11 chr13 53172098 53172323 -48700846 - L1ME LINE L1 -685 5479 5258 10372 183 17 9 chr13 53172432 53175705 -48697464 + L1PB1 LINE L1 2847 6151 0 219 190 0 0 chr13 53175712 53175770 -48697399 + (TA)n Simple_repeat Simple_repeat 2 59 0 281 79 0 0 chr13 53175770 53175808 -48697361 - MER57A LTR ERV1 -363 40 3 850 191 119 94 chr13 53177194 53177617 -48695552 + MER67D LTR ERV1 135 514 0 14704 45 5 2 chr13 53178534 53181122 -48692047 + L1PA5 LINE L1 3552 6151 -3 332 290 45 62 chr13 53181862 53181915 -48691254 + L1MC/D LINE L1 4488 4540 -1606 2168 128 7 0 chr13 53181915 53182221 -48690948 - AluSc SINE Alu -1 308 1 332 290 45 62 chr13 53182221 53182391 -48690778 + L1MC/D LINE L1 4540 4707 -1439 333 197 0 0 chr13 53182391 53182462 -48690707 + (TA)n Simple_repeat Simple_repeat 2 72 0 503 320 31 51 chr13 53182466 53182722 -48690447 - MIR SINE MIR -11 251 1 286 329 81 18 chr13 53182764 53182986 -48690183 + L1MC/D LINE L1 5393 5628 -2180 315 71 0 0 chr13 53183148 53183190 -48689979 + (TA)n Simple_repeat Simple_repeat 1 42 0 2173 54 51 27 chr13 53183327 53183622 -48689547 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 53184710 53184732 -48688437 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr13 53184869 53184905 -48688264 + AT_rich Low_complexity Low_complexity 1 36 0 194 253 48 36 chr13 53185394 53185477 -48687692 + MIR SINE MIR 118 201 -61 24 67 0 0 chr13 53186328 53186373 -48686796 + AT_rich Low_complexity Low_complexity 1 45 0 1872 179 31 31 chr13 53186472 53186862 -48686307 + MLT1B LTR MaLR 1 390 0 27 29 0 0 chr13 53187771 53187805 -48685364 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr13 53188816 53188851 -48684318 + AT_rich Low_complexity Low_complexity 1 35 0 2207 117 0 0 chr13 53189201 53189499 -48683670 - AluSx SINE Alu -11 301 4 32 57 0 0 chr13 53189509 53189562 -48683607 + AT_rich Low_complexity Low_complexity 1 53 0 2192 114 3 3 chr13 53189679 53189977 -48683192 + AluSx SINE Alu 1 298 -14 244 157 137 0 chr13 53190103 53190154 -48683015 + MER63 DNA MER1_type 10 693 -369 6662 78 4 3 chr13 53191046 53192805 -48680364 + L1PA7 LINE L1 4390 6153 -1 316 270 33 116 chr13 53192829 53193044 -48680125 - L1M4 LINE L1 -2079 4067 3871 601 265 93 41 chr13 53193187 53193771 -48679398 - L1ME LINE L1 -5018 1052 500 2180 74 21 0 chr13 53195457 53195740 -48677429 - AluY SINE Alu -22 289 1 321 276 11 0 chr13 53196101 53196188 -48676981 + L1MC4 LINE L1 6616 6703 -1339 313 322 0 0 chr13 53196134 53196224 -48676945 - L1MC4 LINE L1 -1339 6703 6614 * 233 170 38 0 chr13 53196225 53196278 -48676891 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 301 333 0 0 chr13 53196280 53196370 -48676799 + L1MC4 LINE L1 6614 6703 -1339 380 149 27 0 chr13 53196371 53196445 -48676724 + (TATATG)n Simple_repeat Simple_repeat 1 76 0 186 150 0 0 chr13 53196793 53196833 -48676336 + (CA)n Simple_repeat Simple_repeat 2 41 0 19258 189 23 14 chr13 53196934 53200576 -48672593 + ERVL LTR ERVL 1855 5529 -235 1180 193 33 24 chr13 53200581 53200886 -48672283 - MER47B DNA MER2_type -9 409 2 1220 180 9 5 chr13 53200887 53201104 -48672065 + ERVL LTR ERVL 5527 5744 -20 1300 250 51 0 chr13 53201198 53201490 -48671679 + MLT2B2 LTR ERVL 209 515 0 21 57 0 0 chr13 53201525 53201560 -48671609 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 53202052 53202074 -48671095 + AT_rich Low_complexity Low_complexity 1 22 0 1221 324 136 7 chr13 53203030 53203730 -48669439 + MER69 DNA AcHobo 281 1070 -1456 312 27 0 0 chr13 53203735 53203772 -48669397 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 71 0 0 chr13 53203779 53203835 -48669334 + AT_rich Low_complexity Low_complexity 1 56 0 415 217 118 7 chr13 53203898 53204050 -48669119 + MER69 DNA AcHobo 2351 2519 -7 29 0 0 0 chr13 53204436 53204465 -48668704 + AT_rich Low_complexity Low_complexity 1 29 0 32 57 0 0 chr13 53204701 53204754 -48668415 + AT_rich Low_complexity Low_complexity 1 53 0 552 156 96 57 chr13 53205697 53205876 -48667293 - L1MA9 LINE L1 -1 6290 6082 343 96 0 19 chr13 53205873 53205925 -48667244 + L1M3 LINE L1 5699 5749 -419 * 26 50 0 0 chr13 53205968 53206008 -48667161 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr13 53206526 53206550 -48666619 + AT_rich Low_complexity Low_complexity 1 24 0 1128 267 44 31 chr13 53206759 53207145 -48666024 + MLT1D LTR MaLR 115 505 0 733 336 43 11 chr13 53207484 53207867 -48665302 + L1M2 LINE L1 3 435 -6403 363 417 67 6 chr13 53208009 53208189 -48664980 + L1M2 LINE L1 756 946 -5903 10467 243 26 25 chr13 53208934 53210516 -48662653 + L1PA16 LINE L1 768 2348 -3875 1995 149 17 0 chr13 53210516 53210812 -48662357 + AluSq SINE Alu 1 301 -12 10467 243 26 25 chr13 53210812 53210896 -48662273 + L1PA16 LINE L1 2348 2430 -3793 210 37 0 0 chr13 53210896 53210923 -48662246 + (CAA)n Simple_repeat Simple_repeat 2 28 0 10467 243 26 25 chr13 53210923 53211526 -48661643 + L1PA16 LINE L1 2430 3031 -3192 2537 56 0 3 chr13 53211526 53211828 -48661341 + AluY SINE Alu 1 301 -10 10467 243 26 25 chr13 53211828 53214991 -48658178 + L1PA16 LINE L1 3031 6219 -4 537 313 64 26 chr13 53215057 53215434 -48657735 + L1MC/D LINE L1 5254 5644 -2164 26 50 0 0 chr13 53215436 53215476 -48657693 + AT_rich Low_complexity Low_complexity 1 40 0 1402 264 21 10 chr13 53215619 53216005 -48657164 - MLT1C LTR MaLR 0 467 78 2491 215 4 2 chr13 53216014 53216483 -48656686 + ERVL LTR ERVL 4007 4476 -1288 1807 154 33 14 chr13 53216491 53216829 -48656340 - MLT2A2 LTR ERVL -144 309 1 9790 122 22 4 chr13 53216829 53218273 -48654896 - HERVL-A2 LTR ERVL 0 5654 4185 * 16609 63 16 13 chr13 53218250 53221169 -48652000 - HERV17 LTR ERV1 -5317 1579 1 5743 69 20 35 chr13 53221169 53221961 -48651208 - LTR17 LTR ERV1 0 780 1 1141 102 0 0 chr13 53221961 53222118 -48651051 - HERVL LTR ERVL -5052 602 446 * 1240 277 60 3 chr13 53222113 53222506 -48650663 + ERVL LTR ERVL 4470 4844 -641 237 264 0 0 chr13 53223213 53223285 -48649884 + (TA)n Simple_repeat Simple_repeat 1 72 0 40 0 0 0 chr13 53223357 53223397 -48649772 + AT_rich Low_complexity Low_complexity 1 40 0 253 215 25 13 chr13 53223986 53224065 -48649104 + (TA)n Simple_repeat Simple_repeat 1 80 0 39 60 0 0 chr13 53224356 53224423 -48648746 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr13 53224493 53224523 -48648646 + AT_rich Low_complexity Low_complexity 1 30 0 234 264 42 0 chr13 53226647 53226719 -48646450 + CT-rich Low_complexity Low_complexity 2 76 0 378 74 0 0 chr13 53226726 53226780 -48646389 + (CA)n Simple_repeat Simple_repeat 1 54 0 280 340 86 34 chr13 53227035 53227244 -48645925 + L2 LINE L2 3075 3294 -19 27 92 0 0 chr13 53227270 53227346 -48645823 + AT_rich Low_complexity Low_complexity 1 76 0 802 353 33 8 chr13 53228018 53228415 -48644754 + L1PA16 LINE L1 8 414 -7167 10896 236 48 21 chr13 53228977 53233853 -48639316 + L1PA16 LINE L1 2593 7595 -9 22 70 0 0 chr13 53233853 53233896 -48639273 + AT_rich Low_complexity Low_complexity 1 43 0 325 271 165 0 chr13 53234682 53234815 -48638354 - MIR SINE MIR -69 193 39 22 56 0 0 chr13 53235580 53235616 -48637553 + AT_rich Low_complexity Low_complexity 1 36 0 1619 108 5 0 chr13 53236167 53236390 -48636779 - AluSp SINE Alu -10 303 80 21 0 0 0 chr13 53236451 53236472 -48636697 + AT_rich Low_complexity Low_complexity 1 21 0 2901 80 8 0 chr13 53236829 53237219 -48635950 - L1PA8 LINE L1 -11 6161 5769 1164 92 0 0 chr13 53237219 53237372 -48635797 - AluY SINE Alu -20 291 139 4041 64 24 2 chr13 53237372 53238274 -48634895 - L1PA8 LINE L1 -385 5787 4866 351 121 0 0 chr13 53238304 53238362 -48634807 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 468 0 0 0 chr13 53238728 53238780 -48634389 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 27 49 0 0 chr13 53238929 53238970 -48634199 + AT_rich Low_complexity Low_complexity 1 41 0 203 152 0 0 chr13 53239372 53239405 -48633764 + CT-rich Low_complexity Low_complexity 1 33 0 1206 213 91 27 chr13 53239453 53239828 -48633341 + L1 LINE L1 3873 4271 -1875 293 176 14 0 chr13 53239832 53239906 -48633263 + (TA)n Simple_repeat Simple_repeat 1 75 0 297 333 73 50 chr13 53241492 53241795 -48631374 - LTR16C LTR ERVL -23 468 159 503 239 0 17 chr13 53242003 53242120 -48631049 + MLT1A1 LTR MaLR 4 118 -247 55 56 0 0 chr13 53242366 53242456 -48630713 + AT_rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr13 53242493 53242514 -48630655 + AT_rich Low_complexity Low_complexity 1 21 0 1115 270 39 85 chr13 53244489 53245029 -48628140 - MLT1E LTR MaLR -2 591 77 586 343 19 24 chr13 53245339 53245549 -48627620 + LTR33 LTR ERVL 1 209 -312 3488 49 0 7 chr13 53246067 53246518 -48626651 + LTR7 LTR ERV1 1 448 -2 411 75 0 0 chr13 53246691 53246744 -48626425 - LTR7 LTR ERV1 -2 448 396 568 128 0 105 chr13 53246764 53246897 -48626272 - LTR7 LTR ERV1 -331 119 1 280 302 60 47 chr13 53247373 53247522 -48625647 + MLT1J2 LTR MaLR 267 417 -33 339 312 117 73 chr13 53249049 53249496 -48623673 - L2 LINE L2 -267 3046 2548 371 68 17 0 chr13 53249509 53249568 -48623601 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 195 42 0 0 chr13 53249569 53249593 -48623576 + (GA)n Simple_repeat Simple_repeat 1 24 0 311 218 0 0 chr13 53249626 53249681 -48623488 - AluJ/monomer SINE Alu -246 55 1 26 50 0 0 chr13 53251487 53251527 -48621642 + AT_rich Low_complexity Low_complexity 1 40 0 482 289 121 39 chr13 53251933 53252345 -48620824 - L1M4 LINE L1 -2921 3225 2780 276 30 0 0 chr13 53252771 53252804 -48620365 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 352 21 35 chr13 53253447 53253589 -48619580 - MIR3 SINE MIR -4 204 65 31 58 0 0 chr13 53254120 53254172 -48618997 + AT_rich Low_complexity Low_complexity 1 52 0 27 87 0 0 chr13 53254507 53254576 -48618593 + AT_rich Low_complexity Low_complexity 1 69 0 28 0 0 0 chr13 53254690 53254718 -48618451 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 53256247 53256279 -48616890 + AT_rich Low_complexity Low_complexity 1 32 0 1365 193 9 44 chr13 53256296 53256612 -48616557 - AluJb SINE Alu -7 305 1 237 178 0 0 chr13 53256986 53257031 -48616138 + (CATA)n Simple_repeat Simple_repeat 4 48 0 556 354 156 45 chr13 53257681 53258512 -48614657 + L2 LINE L2 121 1089 -2225 1973 133 7 3 chr13 53258512 53258806 -48614363 + AluSx SINE Alu 1 295 -17 556 354 156 45 chr13 53258806 53259003 -48614166 + L2 LINE L2 1089 1263 -2051 1314 154 13 17 chr13 53259736 53259970 -48613199 + MER1B DNA MER1_type 1 233 -64 1646 128 18 2 chr13 53259970 53260285 -48612884 - MER51B LTR ERV1 0 377 1 531 165 92 0 chr13 53260285 53260387 -48612782 + MER1B DNA MER1_type 228 339 0 22 56 0 0 chr13 53260585 53260621 -48612548 + AT_rich Low_complexity Low_complexity 1 36 0 186 314 54 65 chr13 53260699 53260884 -48612285 - MIR SINE MIR -57 205 23 26 30 0 0 chr13 53260996 53261029 -48612140 + AT_rich Low_complexity Low_complexity 1 33 0 211 189 0 0 chr13 53261455 53261492 -48611677 + (CA)n Simple_repeat Simple_repeat 2 38 0 954 290 65 54 chr13 53261503 53261999 -48611170 - MLT1H1 LTR MaLR -7 548 48 1420 196 29 18 chr13 53262003 53262344 -48610825 - L1MA8 LINE L1 -8 6283 5939 22 35 0 0 chr13 53262438 53262467 -48610702 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 53262794 53262817 -48610352 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 53264205 53264227 -48608942 + AT_rich Low_complexity Low_complexity 1 22 0 603 324 29 19 chr13 53264879 53265072 -48608097 - HAL1 LINE L1 -1 2506 2316 430 177 0 0 chr13 53265072 53265151 -48608018 - MADE1 DNA Mariner -1 79 1 603 324 29 19 chr13 53265151 53265367 -48607802 - HAL1 LINE L1 -191 2316 2093 21 0 0 0 chr13 53265421 53265442 -48607727 + AT_rich Low_complexity Low_complexity 1 21 0 1739 207 6 3 chr13 53265465 53265793 -48607376 - ERVL LTR ERVL -1284 4480 4152 4469 224 19 20 chr13 53265807 53266953 -48606216 - L1 LINE L1 -1249 4897 3753 250 202 125 60 chr13 53266944 53267112 -48606057 - L1M4c LINE L1 -4045 2601 2423 * 22 88 0 0 chr13 53267119 53267176 -48605993 + AT_rich Low_complexity Low_complexity 1 57 0 31 0 0 0 chr13 53267203 53267234 -48605935 + AT_rich Low_complexity Low_complexity 1 31 0 640 262 52 31 chr13 53267368 53267642 -48605527 - L1M4c LINE L1 -4600 2046 1796 3398 276 52 46 chr13 53267647 53269059 -48604110 - L1M4c LINE L1 -4840 1702 283 40 67 0 0 chr13 53270176 53270251 -48602918 + AT_rich Low_complexity Low_complexity 1 75 0 23 33 0 0 chr13 53270475 53270505 -48602664 + AT_rich Low_complexity Low_complexity 1 30 0 1812 156 13 25 chr13 53271428 53271742 -48601427 - AluSx SINE Alu -2 310 1 21 36 0 0 chr13 53271844 53271872 -48601297 + AT_rich Low_complexity Low_complexity 1 28 0 1581 158 11 0 chr13 53272208 53272473 -48600696 + AluSx SINE Alu 33 300 -12 23 54 0 0 chr13 53273245 53273282 -48599887 + AT_rich Low_complexity Low_complexity 1 37 0 1490 188 35 120 chr13 53274839 53275355 -48597814 - LTR1B LTR ERV1 -13 813 342 309 26 0 0 chr13 53275501 53275539 -48597630 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1164 123 0 0 chr13 53275555 53275717 -48597452 - AluSq SINE Alu -78 235 74 673 303 0 11 chr13 53275726 53275911 -48597258 - LTR1 LTR ERV1 -602 183 1 453 250 40 14 chr13 53275968 53276116 -48597053 + L1ME2 LINE L1 6003 6154 -10 22 70 0 0 chr13 53276613 53276656 -48596513 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 53276889 53276918 -48596251 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr13 53277727 53277779 -48595390 + AT_rich Low_complexity Low_complexity 1 52 0 26 74 0 0 chr13 53277805 53277859 -48595310 + AT_rich Low_complexity Low_complexity 1 54 0 1877 195 54 37 chr13 53278427 53278908 -48594261 - L1MA9 LINE L1 -31 6281 5793 288 0 0 0 chr13 53278914 53278946 -48594223 + (TG)n Simple_repeat Simple_repeat 1 32 0 1249 184 23 27 chr13 53278946 53279202 -48593967 - Tigger2 DNA MER2_type -12 2706 2452 1667 199 64 11 chr13 53279269 53279630 -48593539 - Tigger2 DNA MER2_type -1974 744 365 1109 213 73 13 chr13 53279636 53279936 -48593233 + MER46B DNA MER2_type 44 236 0 651 238 60 0 chr13 53279940 53280108 -48593061 - Tigger1 DNA MER2_type 0 2418 2241 21 36 0 0 chr13 53280122 53280150 -48593019 + AT_rich Low_complexity Low_complexity 1 28 0 245 28 28 0 chr13 53280152 53280188 -48592981 - Tigger1 DNA MER2_type -167 2251 2215 4349 110 5 7 chr13 53280188 53280861 -48592308 + L1MA2 LINE L1 5628 6298 -6 774 150 0 23 chr13 53280950 53281083 -48592086 - Tigger1 DNA MER2_type -187 2231 2102 10626 155 17 7 chr13 53281084 53283000 -48590169 - L1P LINE L1 -1554 4592 2658 9188 171 30 32 chr13 53283005 53283429 -48589740 - Tigger1 DNA MER2_type -334 2084 1661 1293 110 48 4 chr13 53283429 53283657 -48589512 - L1MA3 LINE L1 -2 6303 6066 9188 171 30 32 chr13 53283657 53284124 -48589045 - Tigger1 DNA MER2_type -757 1661 1194 2394 62 10 3 chr13 53284124 53284433 -48588736 + AluY SINE Alu 1 311 0 9188 171 30 32 chr13 53284433 53285423 -48587746 - Tigger1 DNA MER2_type -1224 1194 206 1962 169 46 34 chr13 53285423 53285968 -48587201 + MLT2A2 LTR ERVL 1 552 -2 711 236 39 0 chr13 53285970 53286148 -48587021 - Tigger1 DNA MER2_type -2208 210 26 558 204 37 11 chr13 53286156 53286310 -48586859 - L1MA9 LINE L1 -401 5777 5639 23 0 0 0 chr13 53286482 53286505 -48586664 + AT_rich Low_complexity Low_complexity 1 23 0 238 372 44 17 chr13 53287612 53287792 -48585377 - L2 LINE L2 -930 2384 2200 864 332 79 22 chr13 53288016 53288786 -48584383 - L2 LINE L2 0 3313 2503 209 348 70 32 chr13 53289399 53289586 -48583583 + L3 LINE CR1 888 1081 -496 180 219 0 0 chr13 53289706 53289747 -48583422 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 228 431 15 0 chr13 53289909 53290046 -48583123 + L2 LINE L2 2949 3087 -226 29 28 0 0 chr13 53290058 53290094 -48583075 + AT_rich Low_complexity Low_complexity 1 36 0 351 294 0 0 chr13 53290808 53290910 -48582259 + (TCCA)n Simple_repeat Simple_repeat 4 105 0 31 26 0 0 chr13 53291581 53291619 -48581550 + AT_rich Low_complexity Low_complexity 1 38 0 283 224 31 10 chr13 53291921 53292019 -48581150 - SATR1 Satellite Satellite -212 258 159 40 21 0 0 chr13 53292503 53292550 -48580619 + AT_rich Low_complexity Low_complexity 1 47 0 22 70 0 0 chr13 53292634 53292677 -48580492 + AT_rich Low_complexity Low_complexity 1 43 0 2206 107 3 0 chr13 53293823 53294122 -48579047 - AluSq SINE Alu -13 300 1 1536 196 95 3 chr13 53294979 53295306 -48577863 + MLT1A1 LTR MaLR 1 357 -8 251 225 51 45 chr13 53295338 53295516 -48577653 + (TA)n Simple_repeat Simple_repeat 1 179 0 180 395 34 0 chr13 53295781 53295900 -48577269 - L3 LINE CR1 -13 1564 1442 2995 221 59 39 chr13 53296632 53297608 -48575561 - L1MD1 LINE L1 -59 6183 5186 678 218 31 109 chr13 53297603 53297795 -48575374 - L1MA8 LINE L1 -25 6266 6117 * 1271 97 0 11 chr13 53297795 53297980 -48575189 - L1PB1 LINE L1 0 6151 5969 678 218 31 109 chr13 53297980 53298172 -48574997 - L1MA8 LINE L1 -174 6117 5912 811 255 37 25 chr13 53298172 53298497 -48574672 - L1MD1 LINE L1 -940 5206 4878 22 0 0 0 chr13 53298603 53298625 -48574544 + AT_rich Low_complexity Low_complexity 1 22 0 1703 145 71 0 chr13 53298841 53299124 -48574045 - AluSx SINE Alu -9 303 1 39 22 0 0 chr13 53299365 53299411 -48573758 + AT_rich Low_complexity Low_complexity 1 46 0 268 279 108 0 chr13 53300460 53300571 -48572598 - MLT1J1 LTR MaLR -2 444 322 425 314 52 12 chr13 53300650 53300822 -48572347 - MLT1J2 LTR MaLR -271 179 1 184 347 0 42 chr13 53301165 53301237 -48571932 - MIR3 SINE MIR -38 170 102 5013 52 38 5 chr13 53301411 53302069 -48571100 + L1PA8 LINE L1 5480 6159 -13 332 221 8 98 chr13 53303058 53303122 -48570047 - MLT1J1 LTR MaLR -296 150 101 662 273 11 6 chr13 53303122 53303298 -48569871 + MER45A DNA AcHobo 2 178 0 332 221 8 98 chr13 53303298 53303355 -48569814 - MLT1J1 LTR MaLR -345 101 40 276 282 0 13 chr13 53304163 53304241 -48568928 + GA-rich Low_complexity Low_complexity 3 79 0 28 29 0 0 chr13 53304694 53304729 -48568440 + AT_rich Low_complexity Low_complexity 1 35 0 318 115 0 0 chr13 53304895 53304947 -48568222 + (TC)n Simple_repeat Simple_repeat 2 53 0 363 302 9 17 chr13 53305198 53305314 -48567855 + ERVL LTR ERVL 2891 3005 -2759 386 353 60 8 chr13 53305646 53305912 -48567257 + ERVL LTR ERVL 3154 3433 -2331 2276 96 7 0 chr13 53306075 53306378 -48566791 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr13 53306608 53306629 -48566540 + AT_rich Low_complexity Low_complexity 1 21 0 1069 229 108 38 chr13 53307108 53307449 -48565720 + MLT1A1 LTR MaLR 1 365 0 374 329 77 70 chr13 53307525 53307838 -48565331 + LTR67 LTR ERVL 181 495 -62 4045 150 32 0 chr13 53307838 53308533 -48564636 + L1PA13 LINE L1 5447 6163 0 2120 141 0 0 chr13 53308676 53308982 -48564187 - AluSq SINE Alu -6 307 2 479 262 32 98 chr13 53308999 53309346 -48563823 - MER46C DNA MER2_type -14 324 1 25 31 0 0 chr13 53309457 53309489 -48563680 + AT_rich Low_complexity Low_complexity 1 32 0 216 290 58 0 chr13 53310092 53310161 -48563008 - L2 LINE L2 -14 3299 3227 28 0 0 0 chr13 53310564 53310592 -48562577 + AT_rich Low_complexity Low_complexity 1 28 0 1578 253 48 36 chr13 53310627 53311021 -48562148 - L1ME LINE L1 -432 5734 5346 1976 118 0 0 chr13 53311021 53311292 -48561877 - AluSc SINE Alu 0 309 39 1578 253 48 36 chr13 53311292 53311827 -48561342 - L1ME LINE L1 -820 5346 4783 23 54 0 0 chr13 53311870 53311907 -48561262 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 53312398 53312419 -48560750 + AT_rich Low_complexity Low_complexity 1 21 0 310 336 75 44 chr13 53314235 53314530 -48558639 + HAL1 LINE L1 1674 1977 -530 554 281 130 24 chr13 53315067 53315320 -48557849 + LTR50 LTR ERVL 1 280 -515 671 230 6 6 chr13 53315341 53315506 -48557663 - L1PA16 LINE L1 -8 6158 5994 2252 147 8 0 chr13 53315506 53315867 -48557302 + L1PA16 LINE L1 5624 5987 -179 2315 71 7 0 chr13 53316543 53316851 -48556318 + AluSg SINE Alu 1 310 0 199 114 45 0 chr13 53317532 53317576 -48555593 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 1465 236 119 11 chr13 53318185 53318639 -48554530 - L1MC/D LINE L1 -2173 5822 5320 339 132 33 11 chr13 53318665 53318756 -48554413 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 1701 212 5 8 chr13 53318763 53319141 -48554028 - L1MC/D LINE L1 -3449 2697 2321 12731 202 25 9 chr13 53319264 53319626 -48553543 - L1PB1 LINE L1 -5 6862 6507 243 0 0 0 chr13 53319626 53319653 -48553516 + (TA)n Simple_repeat Simple_repeat 2 28 0 12731 202 25 9 chr13 53319653 53323169 -48550000 - L1PB1 LINE L1 -360 6507 2925 6446 145 17 4 chr13 53323139 53324192 -48548977 - L1PB1 LINE L1 -5794 1069 4 * 34 24 0 0 chr13 53324464 53324505 -48548664 + AT_rich Low_complexity Low_complexity 1 41 0 225 94 0 0 chr13 53325105 53325137 -48548032 + (TA)n Simple_repeat Simple_repeat 1 32 0 271 367 33 33 chr13 53326208 53326388 -48546781 - MIR SINE MIR -10 252 73 21 0 0 0 chr13 53326976 53326997 -48546172 + AT_rich Low_complexity Low_complexity 1 21 0 2003 107 66 33 chr13 53328941 53329304 -48543865 - THE1C LTR MaLR 0 375 1 180 158 0 0 chr13 53329627 53329665 -48543504 + (TA)n Simple_repeat Simple_repeat 2 39 0 2014 118 6 38 chr13 53329668 53329981 -48543188 - AluSq SINE Alu -10 303 1 190 268 16 114 chr13 53332132 53332255 -48540914 - L2 LINE L2 -478 2836 2726 437 271 23 15 chr13 53332384 53332517 -48540652 + Charlie1a DNA MER1_type 1 134 -1321 1130 183 58 35 chr13 53332533 53332844 -48540325 + Charlie1a DNA MER1_type 251 568 -887 198 324 73 0 chr13 53332913 53332981 -48540188 - MIR SINE MIR -58 150 78 267 250 0 31 chr13 53333150 53333214 -48539955 - MER5B DNA MER1_type -44 134 73 1974 172 46 14 chr13 53333228 53333594 -48539575 - MER61D LTR ERV1 -10 491 114 273 196 59 0 chr13 53333648 53333699 -48539470 + MER5B DNA MER1_type 125 178 0 242 241 0 0 chr13 53333702 53333756 -48539413 + A-rich Low_complexity Low_complexity 1 54 0 6661 238 43 85 chr13 53334777 53337636 -48535533 - L1M1 LINE L1 -4015 3550 16 22 56 0 0 chr13 53338274 53338310 -48534859 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr13 53338375 53338414 -48534755 + AT_rich Low_complexity Low_complexity 1 39 0 600 262 42 55 chr13 53340064 53340301 -48532868 + MLT1D LTR MaLR 1 234 -271 1130 247 78 23 chr13 53340301 53340609 -48532560 - MLT1A1 LTR MaLR -40 325 1 440 222 0 28 chr13 53340612 53340720 -48532449 + MLT1D LTR MaLR 363 467 0 21 0 0 0 chr13 53340801 53340822 -48532347 + AT_rich Low_complexity Low_complexity 1 21 0 313 257 28 69 chr13 53340975 53341119 -48532050 - MLT1J2 LTR MaLR -290 160 23 409 254 71 40 chr13 53341308 53341434 -48531735 + MLT2C1 LTR ERVL 217 346 -51 213 121 0 0 chr13 53341750 53341783 -48531386 + (TG)n Simple_repeat Simple_repeat 2 34 0 258 167 0 42 chr13 53341789 53341837 -48531332 + MLT2C1 LTR ERVL 350 395 -2 27 29 0 0 chr13 53341948 53341982 -48531187 + AT_rich Low_complexity Low_complexity 1 34 0 198 91 0 0 chr13 53342248 53342281 -48530888 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 297 261 65 96 chr13 53343576 53343815 -48529354 + L1MEd LINE L1 916 1142 -4977 2242 112 0 0 chr13 53343815 53344119 -48529050 + AluSc SINE Alu 2 305 -4 297 261 65 96 chr13 53344119 53344232 -48528937 + L1MEd LINE L1 1142 1257 -4862 22 0 0 0 chr13 53344435 53344457 -48528712 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr13 53344467 53344521 -48528648 + AT_rich Low_complexity Low_complexity 1 54 0 24 77 0 0 chr13 53344571 53344623 -48528546 + AT_rich Low_complexity Low_complexity 1 52 0 378 193 0 0 chr13 53344670 53344758 -48528411 + L1MB4 LINE L1 6093 6180 0 721 175 206 0 chr13 53344896 53345056 -48528113 - MLT2B2 LTR ERVL -1 514 322 207 232 0 0 chr13 53345579 53345635 -48527534 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chr13 53345645 53345669 -48527500 + AT_rich Low_complexity Low_complexity 1 24 0 238 231 0 15 chr13 53345764 53345829 -48527340 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 57 0 0 chr13 53346457 53346492 -48526677 + AT_rich Low_complexity Low_complexity 1 35 0 635 243 98 41 chr13 53347582 53347937 -48525232 + HsTC2 DNA Tc2 1524 1900 0 262 259 23 107 chr13 53348900 53349031 -48524138 - MIR3 SINE MIR -52 156 37 601 324 33 36 chr13 53350933 53351208 -48521961 + LTR16C LTR ERVL 217 490 -1 199 250 0 18 chr13 53352947 53353003 -48520166 + L2 LINE L2 3257 3311 -2 22 35 0 0 chr13 53353318 53353347 -48519822 + AT_rich Low_complexity Low_complexity 1 29 0 1433 219 39 21 chr13 53354887 53355221 -48517948 - MLT1A1 LTR MaLR -22 343 4 1180 149 28 5 chr13 53355224 53355439 -48517730 - MLT1A1-int LTR MaLR 0 1735 1516 353 186 17 25 chr13 53355474 53355592 -48517577 + L1M4 LINE L1 3158 3274 -2872 908 233 52 9 chr13 53355642 53355874 -48517295 - MLT1A1 LTR MaLR 0 365 124 1895 266 65 9 chr13 53355876 53356673 -48516496 - L1M4 LINE L1 -2692 3454 2613 26 74 0 0 chr13 53356838 53356892 -48516277 + AT_rich Low_complexity Low_complexity 1 54 0 189 121 0 0 chr13 53357035 53357068 -48516101 + (TA)n Simple_repeat Simple_repeat 2 34 0 251 265 0 20 chr13 53357083 53357181 -48515988 - L1MC4 LINE L1 -1339 6703 6608 180 240 30 0 chr13 53357193 53357293 -48515876 + (TA)n Simple_repeat Simple_repeat 1 103 0 356 333 0 23 chr13 53357304 53357475 -48515694 + (TATG)n Simple_repeat Simple_repeat 2 168 0 203 390 6 11 chr13 53357417 53357594 -48515575 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 240 271 47 24 chr13 53357595 53357680 -48515489 + L1MC4 LINE L1 6613 6699 -1343 330 301 6 44 chr13 53357686 53357869 -48515300 + (TATG)n Simple_repeat Simple_repeat 4 179 0 202 373 12 12 chr13 53357914 53358083 -48515086 + (TA)n Simple_repeat Simple_repeat 1 169 0 * 365 254 5 78 chr13 53357960 53358153 -48515016 + (TATG)n Simple_repeat Simple_repeat 1 179 0 415 298 11 33 chr13 53358180 53358361 -48514808 + (TATG)n Simple_repeat Simple_repeat 3 179 0 * 419 318 9 9 chr13 53358322 53358633 -48514536 + (TATATG)n Simple_repeat Simple_repeat 1 311 0 319 300 0 53 chr13 53358647 53358837 -48514332 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 412 352 0 0 chr13 53358898 53359074 -48514095 + (TA)n Simple_repeat Simple_repeat 2 177 0 282 335 0 49 chr13 53358998 53359183 -48513986 + (TATG)n Simple_repeat Simple_repeat 4 179 0 * 361 370 0 11 chr13 53359135 53359316 -48513853 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 * 435 242 0 70 chr13 53359220 53359406 -48513763 + (TATG)n Simple_repeat Simple_repeat 4 176 0 599 156 0 0 chr13 53359407 53359516 -48513653 + AluSg/x SINE Alu 200 308 -1 248 238 0 20 chr13 53359704 53359805 -48513364 + (CATATA)n Simple_repeat Simple_repeat 3 101 0 22 0 0 0 chr13 53360337 53360359 -48512810 + AT_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr13 53360480 53360518 -48512651 + AT_rich Low_complexity Low_complexity 1 38 0 291 369 57 0 chr13 53361032 53361173 -48511996 - MIR SINE MIR 0 262 114 228 270 40 105 chr13 53361261 53361413 -48511756 + L2 LINE L2 2828 2969 -345 21 0 0 0 chr13 53361775 53361796 -48511373 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr13 53362823 53362848 -48510321 + AT_rich Low_complexity Low_complexity 1 25 0 2080 216 28 31 chr13 53363800 53364343 -48508826 + L1PB3 LINE L1 3473 4013 -2133 7327 38 2 2 chr13 53364343 53365608 -48507561 + L1PA5 LINE L1 4890 6154 0 4289 183 46 37 chr13 53365610 53366667 -48506502 + L1PB3 LINE L1 4456 5514 -640 2227 137 16 11 chr13 53366667 53367040 -48506129 + THE1C LTR MaLR 1 375 0 4289 183 46 37 chr13 53367040 53367687 -48505482 + L1PB3 LINE L1 5514 6154 0 1814 150 20 3 chr13 53368065 53368358 -48504811 + AluSx SINE Alu 1 298 -14 208 328 111 74 chr13 53368391 53368635 -48504534 - L2 LINE L2 -436 2878 2626 371 324 47 88 chr13 53368783 53369123 -48504046 - L2 LINE L2 -740 2574 2249 202 273 0 76 chr13 53369771 53369837 -48503332 - L2 LINE L2 -7 3306 3246 306 303 80 49 chr13 53370419 53370683 -48502486 + L1MEd LINE L1 4 275 -5844 22 35 0 0 chr13 53371295 53371324 -48501845 + AT_rich Low_complexity Low_complexity 1 29 0 528 261 125 44 chr13 53371331 53371626 -48501543 + L1ME2 LINE L1 5836 6154 -10 229 247 37 12 chr13 53372159 53372240 -48500929 + L1MEd LINE L1 740 822 -5297 517 323 72 4 chr13 53372455 53372734 -48500435 + L1MEd LINE L1 3003 3300 -2829 8617 221 27 52 chr13 53372802 53373975 -48499194 + L1PA16 LINE L1 1708 2909 -3257 2398 58 0 7 chr13 53373975 53374267 -48498902 + AluY SINE Alu 1 290 -21 8617 221 27 52 chr13 53374267 53374938 -48498231 + L1PA16 LINE L1 2909 3595 -2571 186 43 0 0 chr13 53374938 53374961 -48498208 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8617 221 27 52 chr13 53374961 53377670 -48495499 + L1PA16 LINE L1 3595 6155 -11 526 272 25 47 chr13 53377686 53377921 -48495248 + L1MC/D LINE L1 5409 5638 -2170 765 193 7 0 chr13 53378029 53378169 -48495000 + L1M3f LINE L1 4 144 -5184 180 0 0 0 chr13 53378243 53378263 -48494906 + (TG)n Simple_repeat Simple_repeat 1 20 0 229 325 0 0 chr13 53378595 53378672 -48494497 - MIR SINE MIR -26 236 160 1117 180 50 0 chr13 53379003 53379203 -48493966 + AluSg/x SINE Alu 86 295 -17 213 211 33 11 chr13 53381739 53381829 -48491340 + (TA)n Simple_repeat Simple_repeat 1 92 0 4433 61 0 0 chr13 53382427 53382987 -48490182 + L1PA7 LINE L1 5593 6152 -2 27 0 0 0 chr13 53382987 53383014 -48490155 + AT_rich Low_complexity Low_complexity 1 27 0 913 200 117 53 chr13 53383027 53383412 -48489757 - LTR1B LTR ERV1 0 826 373 26 30 0 0 chr13 53384196 53384229 -48488940 + AT_rich Low_complexity Low_complexity 1 33 0 1849 225 90 3 chr13 53384305 53384883 -48488286 + Charlie1 DNA MER1_type 2066 2693 -68 230 95 0 0 chr13 53384884 53384926 -48488243 + L1PA15 LINE L1 6122 6163 -2 269 271 0 0 chr13 53385424 53385494 -48487675 - L1ME LINE L1 -558 5612 5543 6309 149 10 9 chr13 53385509 53386929 -48486240 - L1MA3 LINE L1 0 6305 4885 274 284 0 0 chr13 53387041 53387129 -48486040 + (CATA)n Simple_repeat Simple_repeat 3 90 0 267 313 37 0 chr13 53387130 53387264 -48485905 - L1ME LINE L1 -875 5271 5133 21 71 0 0 chr13 53387363 53387405 -48485764 + AT_rich Low_complexity Low_complexity 1 42 0 1060 280 115 16 chr13 53387707 53388279 -48484890 - L1MC4 LINE L1 -150 7892 7254 798 316 37 25 chr13 53388295 53388633 -48484536 - L1MC4 LINE L1 -958 7084 6738 2318 82 0 7 chr13 53388633 53388937 -48484232 + AluY SINE Alu 1 302 -9 798 316 37 25 chr13 53388937 53389031 -48484138 - L1MC4 LINE L1 -1304 6738 6647 239 130 159 14 chr13 53389076 53389145 -48484024 + L1MC4 LINE L1 6615 6693 -1349 21 57 0 0 chr13 53389147 53389182 -48483987 + AT_rich Low_complexity Low_complexity 1 35 0 37 62 0 0 chr13 53389708 53389773 -48483396 + AT_rich Low_complexity Low_complexity 1 65 0 1520 297 42 38 chr13 53391104 53391653 -48481516 + L1M3e LINE L1 470 1020 -6469 3812 263 53 19 chr13 53391798 53393733 -48479436 + L1M3e LINE L1 2008 4008 -3557 930 177 0 31 chr13 53393760 53393952 -48479217 + L1M3e LINE L1 4766 4951 -2614 663 175 21 77 chr13 53393975 53394118 -48479051 - AluJb SINE Alu -15 297 163 353 282 50 72 chr13 53394345 53394526 -48478643 - L1M3d LINE L1 -5711 180 4 443 143 0 44 chr13 53394619 53394710 -48478459 - L1P LINE L1 -1599 4547 4461 449 316 230 17 chr13 53395462 53395931 -48477238 + L2 LINE L2 747 1315 -1999 384 276 63 41 chr13 53395933 53396154 -48477015 - LTR16B LTR ERVL 0 464 239 632 308 163 60 chr13 53396331 53397183 -48475986 + L2 LINE L2 1310 2249 -1065 217 228 41 24 chr13 53397221 53397344 -48475825 + (TATAA)n Simple_repeat Simple_repeat 4 128 0 186 332 153 63 chr13 53397519 53397742 -48475427 + L2 LINE L2 586 828 -2486 2616 39 0 3 chr13 53398683 53398995 -48474174 - AluYa5 SINE Alu 0 311 1 1379 161 47 23 chr13 53398995 53399356 -48473813 + MER65A-int LTR ERV1 3008 3789 -1147 5109 230 68 9 chr13 53399396 53400356 -48472813 + MER65A-int LTR ERV1 3513 4537 -334 183 80 0 0 chr13 53400356 53400381 -48472788 + (TG)n Simple_repeat Simple_repeat 2 26 0 5109 230 68 9 chr13 53400381 53400716 -48472453 + MER65A-int LTR ERV1 4537 4851 -20 186 133 0 0 chr13 53400727 53400757 -48472412 + (A)n Simple_repeat Simple_repeat 1 30 0 2442 158 16 14 chr13 53400757 53401201 -48471968 + MER65A LTR ERV1 1 445 0 34 55 0 0 chr13 53406367 53406422 -48466747 + AT_rich Low_complexity Low_complexity 1 55 0 253 163 20 0 chr13 53407224 53407273 -48465896 + HSMAR1 DNA Mariner 1237 1286 -1 5376 114 1 0 chr13 53407721 53408519 -48464650 + L1P LINE L1 3673 4471 -1675 1432 106 0 9 chr13 53408519 53408734 -48464435 + L1PA8 LINE L1 5955 6169 -3 2075 65 65 10 chr13 53409170 53409460 -48463709 - AluY SINE Alu -4 307 2 2224 85 0 0 chr13 53409855 53410171 -48462998 - AluSg SINE Alu 0 316 1 200 235 20 0 chr13 53410858 53410909 -48462260 + A-rich Low_complexity Low_complexity 2 53 0 21 36 0 0 chr13 53411340 53411368 -48461801 + AT_rich Low_complexity Low_complexity 1 28 0 198 71 0 0 chr13 53411871 53411899 -48461270 + (CA)n Simple_repeat Simple_repeat 2 29 0 222 282 77 13 chr13 53412788 53412866 -48460303 + MIR SINE MIR 33 115 -147 213 138 50 50 chr13 53413896 53413976 -48459193 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr13 53414009 53414035 -48459134 + AT_rich Low_complexity Low_complexity 1 26 0 839 202 0 35 chr13 53414598 53414771 -48458398 - FAM SINE Alu -8 167 1 300 281 98 33 chr13 53414774 53414927 -48458242 + L1ME4a LINE L1 5704 5866 -255 477 62 0 0 chr13 53415233 53415298 -48457871 + (CA)n Simple_repeat Simple_repeat 2 66 0 25 0 0 0 chr13 53415839 53415864 -48457305 + AT_rich Low_complexity Low_complexity 1 25 0 269 140 18 0 chr13 53416399 53416456 -48456713 + (TTA)n Simple_repeat Simple_repeat 2 59 0 408 325 134 23 chr13 53416937 53417279 -48455890 - L2 LINE L2 0 3313 2934 242 331 103 28 chr13 53417997 53418142 -48455027 - MIR SINE MIR -48 214 59 221 321 127 30 chr13 53418238 53418372 -48454797 - MIR3 SINE MIR -24 184 38 192 333 118 35 chr13 53418803 53418947 -48454222 - MIR SINE MIR -100 162 7 352 332 34 75 chr13 53420024 53420292 -48452877 + MIR SINE MIR 6 262 0 369 331 36 0 chr13 53421003 53421142 -48452027 + L2 LINE L2 1841 1984 -1330 23 0 0 0 chr13 53422781 53422804 -48450365 + AT_rich Low_complexity Low_complexity 1 23 0 209 355 130 45 chr13 53423405 53423980 -48449189 + L2 LINE L2 1737 2360 -954 206 376 25 19 chr13 53424332 53424489 -48448680 + L2 LINE L2 2552 2709 -605 1967 179 31 42 chr13 53425112 53425593 -48447576 - L1MA7 LINE L1 -6 6285 5810 219 344 115 8 chr13 53426666 53426788 -48446381 + MIR SINE MIR 74 208 -54 206 196 36 0 chr13 53426882 53426938 -48446231 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 30 0 0 0 chr13 53428981 53429011 -48444158 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 53429389 53429419 -48443750 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chr13 53429542 53429571 -48443598 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 125 0 0 chr13 53429600 53429632 -48443537 + (GA)n Simple_repeat Simple_repeat 1 32 0 3875 149 35 9 chr13 53431297 53432030 -48441139 - Tigger3(Golem) DNA MER2_type 0 3029 2278 588 220 0 9 chr13 53432021 53432130 -48441039 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 188 290 129 52 chr13 53432544 53432699 -48440470 - MIR SINE MIR -89 173 7 235 395 92 0 chr13 53433886 53434071 -48439098 - MIR SINE MIR -59 203 2 380 293 180 37 chr13 53434833 53435100 -48438069 + L2 LINE L2 2935 3259 -54 2273 98 44 22 chr13 53435100 53435467 -48437702 + THE1C LTR MaLR 1 375 0 380 293 180 37 chr13 53435467 53435527 -48437642 + L2 LINE L2 3259 3309 -4 2076 119 7 3 chr13 53437624 53437919 -48435250 + AluSx SINE Alu 2 297 -15 306 258 0 11 chr13 53438100 53438189 -48434980 + L1MC3 LINE L1 7690 7777 -8 282 276 86 33 chr13 53438255 53438465 -48434704 - L1ME LINE L1 -240 5881 5661 22 0 0 0 chr13 53439656 53439678 -48433491 + AT_rich Low_complexity Low_complexity 1 22 0 181 349 36 0 chr13 53440932 53441015 -48432154 + L2 LINE L2 3224 3309 -4 245 380 143 30 chr13 53441525 53442605 -48430564 - L2 LINE L2 -594 2720 1519 317 242 81 24 chr13 53443171 53443295 -48429874 + LTR33A LTR ERVL 393 523 0 22 35 0 0 chr13 53443496 53443525 -48429644 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 53443714 53443742 -48429427 + AT_rich Low_complexity Low_complexity 1 28 0 1627 134 35 3 chr13 53443799 53444082 -48429087 + L1MA8 LINE L1 5999 6290 -1 521 257 153 79 chr13 53444230 53444735 -48428434 - MLT1F LTR MaLR 0 542 1 417 308 120 36 chr13 53445489 53446022 -48427147 - L1MCa LINE L1 -3220 3206 2629 3930 85 11 7 chr13 53446416 53446968 -48426201 - MER41A LTR ERV1 0 554 1 484 281 96 62 chr13 53447346 53447699 -48425470 - L2 LINE L2 0 3313 2949 255 61 0 0 chr13 53448426 53448459 -48424710 + (CA)n Simple_repeat Simple_repeat 1 33 0 355 261 202 82 chr13 53448507 53448983 -48424186 - MLT2F LTR ERVL -3 660 128 381 268 27 18 chr13 53449104 53449216 -48423953 - Ricksha DNA DNA -2890 356 244 * 520 309 27 0 chr13 53449116 53449265 -48423904 - ERVL-F LTR ERVL -8 5756 5604 1347 132 9 35 chr13 53449478 53449705 -48423464 - THE1B LTR MaLR 0 364 144 331 262 48 48 chr13 53450470 53450596 -48422573 - L1MCa LINE L1 -4917 1509 1384 210 223 0 85 chr13 53451089 53451183 -48421986 + T-rich Low_complexity Low_complexity 4 89 0 2031 127 13 0 chr13 53451224 53451523 -48421646 - AluSg SINE Alu -7 303 1 705 318 51 63 chr13 53452591 53453079 -48420090 - L2 LINE L2 -10 3303 2822 2711 174 8 8 chr13 53453141 53453618 -48419551 + MER31A LTR ERV1 1 477 -8 1867 211 10 13 chr13 53454746 53455134 -48418035 + MLT1B LTR MaLR 1 387 -3 931 245 98 46 chr13 53457662 53458009 -48415160 - MLT1A1 LTR MaLR 0 365 1 503 361 41 20 chr13 53459475 53459669 -48413500 + ERVL LTR ERVL 1864 2052 -3647 2090 114 9 25 chr13 53459669 53459986 -48413183 - AluSx SINE Alu 0 312 1 503 361 41 20 chr13 53459986 53460244 -48412925 + ERVL LTR ERVL 2052 2372 -3327 1045 317 73 34 chr13 53460309 53460928 -48412241 + ERVL LTR ERVL 2526 3168 -2596 717 210 23 46 chr13 53462527 53462748 -48410421 + L1M LINE L1 5152 5365 -806 202 279 116 12 chr13 53463239 53463325 -48409844 - MIR SINE MIR -44 218 124 559 379 68 14 chr13 53463466 53463954 -48409215 + ERVL LTR ERVL 4072 4585 -1179 231 156 0 0 chr13 53464189 53464234 -48408935 - L1MA3 LINE L1 0 6305 6261 251 366 98 7 chr13 53464262 53464415 -48408754 - LTR16A LTR ERVL -69 381 215 597 346 181 6 chr13 53465064 53465402 -48407767 + LTR16A LTR ERVL 54 450 0 1993 102 46 0 chr13 53465423 53465708 -48407461 + AluSp SINE Alu 1 298 -15 264 131 83 12 chr13 53465735 53465819 -48407350 + (TA)n Simple_repeat Simple_repeat 2 91 0 350 241 84 52 chr13 53466781 53466972 -48406197 - L1MA8 LINE L1 -2 6289 6093 21 0 0 0 chr13 53466996 53467017 -48406152 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr13 53467569 53467598 -48405571 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 53467608 53467637 -48405532 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr13 53467659 53467702 -48405467 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 53468055 53468083 -48405086 + AT_rich Low_complexity Low_complexity 1 28 0 292 372 0 0 chr13 53468132 53468226 -48404943 - MIR SINE MIR -155 107 14 44 75 0 0 chr13 53468506 53468599 -48404570 + AT_rich Low_complexity Low_complexity 1 93 0 189 214 0 0 chr13 53469257 53469299 -48403870 + (TA)n Simple_repeat Simple_repeat 2 43 0 440 285 64 31 chr13 53469318 53469593 -48403576 + L1M4 LINE L1 5144 5426 -748 210 150 0 0 chr13 53469593 53469633 -48403536 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr13 53469869 53469893 -48403276 + AT_rich Low_complexity Low_complexity 1 24 0 681 323 10 7 chr13 53470359 53470650 -48402519 + L1PA12 LINE L1 7 298 -7283 1011 254 34 38 chr13 53471897 53472188 -48400981 + L1PA12 LINE L1 2018 2307 -5267 * 3357 221 20 27 chr13 53472179 53473422 -48399747 - L1PA13 LINE L1 -4083 2714 1509 * 8786 234 21 13 chr13 53473419 53474846 -48398323 + L1P LINE L1 2968 4421 -1725 276 30 0 0 chr13 53474846 53474879 -48398290 + (CA)n Simple_repeat Simple_repeat 2 34 0 8786 234 21 13 chr13 53474879 53475713 -48397456 + L1P LINE L1 4421 5247 -899 28 61 0 0 chr13 53475718 53475767 -48397402 + AT_rich Low_complexity Low_complexity 1 49 0 3229 158 26 46 chr13 53475767 53476462 -48396707 - L1MA3 LINE L1 0 6305 5625 12368 200 19 19 chr13 53475847 53476458 -48396711 - L1MA2 LINE L1 -57 7666 7057 3800 155 16 0 chr13 53476458 53477083 -48396086 - MER41B LTR ERV1 0 635 1 12368 200 19 19 chr13 53477083 53477999 -48395170 - L1MA2 LINE L1 -666 7057 6143 213 94 0 0 chr13 53477999 53478031 -48395138 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 12368 200 19 19 chr13 53478031 53481416 -48391753 - L1MA2 LINE L1 -1580 6143 2757 237 196 0 0 chr13 53481412 53481468 -48391701 + L1MC4 LINE L1 6648 6703 -1339 * 741 218 22 2 chr13 53481642 53481835 -48391334 - L1MC2 LINE L1 -238 5932 5801 21 0 0 0 chr13 53483113 53483134 -48390035 + AT_rich Low_complexity Low_complexity 1 21 0 717 281 70 48 chr13 53483196 53483823 -48389346 + L1ME3 LINE L1 4194 4834 -1312 642 205 0 8 chr13 53483824 53483946 -48389223 + AluJb SINE Alu 1 121 -191 1254 163 0 10 chr13 53483995 53484197 -48388972 + AluJb SINE Alu 110 309 -3 216 0 0 0 chr13 53484197 53484221 -48388948 + (TA)n Simple_repeat Simple_repeat 1 24 0 1212 294 96 35 chr13 53484230 53485474 -48387695 + L1ME3 LINE L1 4832 6157 -5 246 315 206 0 chr13 53486246 53486338 -48386831 - L2 LINE L2 -19 3294 3184 489 311 174 5 chr13 53486367 53486579 -48386590 - MIR SINE MIR -3 259 12 426 125 0 47 chr13 53486680 53486808 -48386361 + (TA)n Simple_repeat Simple_repeat 2 123 0 258 306 64 17 chr13 53486872 53487107 -48386062 + HAL1b LINE L1 840 1085 -263 21 89 0 0 chr13 53487395 53487451 -48385718 + AT_rich Low_complexity Low_complexity 1 56 0 308 317 89 64 chr13 53487609 53487659 -48385510 - LTR16B LTR ERVL 0 464 417 2217 203 26 77 chr13 53487659 53488241 -48384928 + MLT2B3 LTR ERVL 3 554 0 308 317 89 64 chr13 53488241 53488581 -48384588 - LTR16B LTR ERVL -47 417 64 505 111 33 0 chr13 53488676 53488766 -48384403 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 21 0 0 0 chr13 53489698 53489719 -48383450 + AT_rich Low_complexity Low_complexity 1 21 0 358 303 169 45 chr13 53489970 53490442 -48382727 - L1M4 LINE L1 -5295 1560 1030 228 221 53 80 chr13 53490725 53490838 -48382331 - L1M4 LINE L1 -6626 233 124 294 29 0 0 chr13 53491192 53491227 -48381942 + (TAA)n Simple_repeat Simple_repeat 3 37 0 598 245 0 25 chr13 53491587 53491746 -48381423 - MER96B DNA MER1_type? -261 156 2 23 0 0 0 chr13 53491926 53491949 -48381220 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr13 53491975 53492010 -48381159 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr13 53492215 53492253 -48380916 + AT_rich Low_complexity Low_complexity 1 38 0 443 266 79 57 chr13 53492430 53492746 -48380423 - HAL1 LINE L1 -707 1800 1478 880 138 0 13 chr13 53493019 53493171 -48379998 - L1MA5 LINE L1 0 6300 6151 1425 189 24 20 chr13 53493171 53493467 -48379702 + L1MA5 LINE L1 5715 6011 -289 216 302 12 12 chr13 53494816 53494902 -48378267 + GA-rich Low_complexity Low_complexity 3 88 0 23 68 0 0 chr13 53495622 53495666 -48377503 + AT_rich Low_complexity Low_complexity 1 44 0 1854 200 63 22 chr13 53498022 53498437 -48374732 + Tigger2a DNA MER2_type 1 432 -2 1323 165 112 104 chr13 53499213 53499320 -48373849 - MER47A DNA MER2_type -1963 360 255 2154 40 0 0 chr13 53499320 53499571 -48373598 - AluY SINE Alu -17 294 44 1323 165 112 104 chr13 53499571 53499820 -48373349 - MER47A DNA MER2_type -2068 255 1 1549 197 25 66 chr13 53500498 53500905 -48372264 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr13 53502186 53502224 -48370945 + AT_rich Low_complexity Low_complexity 1 38 0 465 341 62 16 chr13 53502526 53502784 -48370385 + L1MEc LINE L1 78 347 -6049 922 261 62 45 chr13 53503616 53503752 -48369417 + L1MEc LINE L1 1687 1819 -4577 1259 289 68 37 chr13 53503752 53504324 -48368845 + MLT1E LTR MaLR 1 590 -3 922 261 62 45 chr13 53504324 53504784 -48368385 + L1MEc LINE L1 1819 2293 -4103 418 269 77 34 chr13 53504916 53505150 -48368019 + L1MEc LINE L1 2984 3227 -2988 1608 285 70 45 chr13 53505208 53506527 -48366642 + L1MEc LINE L1 3353 4703 -1512 22 88 0 0 chr13 53508033 53508090 -48365079 + AT_rich Low_complexity Low_complexity 1 57 0 1663 142 0 0 chr13 53508709 53508963 -48364206 - AluSx SINE Alu 0 312 59 234 0 0 0 chr13 53509439 53509465 -48363704 + (TA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 53510087 53510108 -48363061 + AT_rich Low_complexity Low_complexity 1 21 0 230 183 17 17 chr13 53510248 53510308 -48362861 + (TG)n Simple_repeat Simple_repeat 1 60 0 2406 105 11 0 chr13 53510452 53510804 -48362365 - L1PA13 LINE L1 -5 6158 5803 250 211 22 33 chr13 53510935 53511025 -48362144 - L1MC4 LINE L1 -1340 6702 6614 212 182 0 18 chr13 53511078 53511133 -48362036 + CT-rich Low_complexity Low_complexity 2 55 0 1691 164 0 21 chr13 53511890 53512177 -48360992 + AluJo SINE Alu 1 281 -31 180 77 0 0 chr13 53512181 53512207 -48360962 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 938 286 41 59 chr13 53512359 53512866 -48360303 + L1ME3A LINE L1 5583 6080 -90 872 243 53 4 chr13 53512883 53513130 -48360039 - L1MD3 LINE L1 -12 7983 7725 1654 284 82 32 chr13 53513310 53514348 -48358821 + Charlie2a DNA MER1_type 408 1497 -1365 745 264 6 11 chr13 53514350 53514532 -48358637 + FRAM SINE Alu 1 174 -2 567 255 46 25 chr13 53514532 53514771 -48358398 + Charlie2a DNA MER1_type 1505 1748 -1114 8070 218 53 46 chr13 53514771 53515478 -48357691 - L1PB4 LINE L1 -134 6022 5322 2106 118 3 3 chr13 53515478 53515784 -48357385 - AluSq SINE Alu -5 308 3 8070 218 53 46 chr13 53515784 53517327 -48355842 - L1PB4 LINE L1 -834 5322 3732 1418 363 16 37 chr13 53517327 53517762 -48355407 + MSTA LTR MaLR 3 428 0 8070 218 53 46 chr13 53517762 53518768 -48354401 - L1PB4 LINE L1 -2424 3732 2735 8729 46 0 1 chr13 53518804 53520067 -48353102 - L1P2 LINE L1 -583 5571 4310 2978 53 0 5 chr13 53520067 53520437 -48352732 + L1PA5 LINE L1 5781 6154 0 1416 183 28 17 chr13 53520484 53520773 -48352396 - MSTB LTR MaLR -80 346 55 3106 253 15 9 chr13 53520794 53521647 -48351522 - L1PB4 LINE L1 -3452 2694 1837 * 3141 268 24 21 chr13 53521633 53522842 -48350327 - L1PA15-16 LINE L1 -3655 3194 1982 726 277 156 23 chr13 53522880 53523657 -48349512 + Charlie2a DNA MER1_type 1921 2800 -62 22 0 0 0 chr13 53523699 53523721 -48349448 + AT_rich Low_complexity Low_complexity 1 22 0 186 398 32 0 chr13 53524400 53524493 -48348676 - L2 LINE L2 -975 2339 2244 1946 253 42 32 chr13 53524493 53525022 -48348147 + MLT2B3 LTR ERVL 1 534 -20 239 247 47 18 chr13 53525023 53525193 -48347976 + (TA)n Simple_repeat Simple_repeat 2 176 0 22 35 0 0 chr13 53525393 53525422 -48347747 + AT_rich Low_complexity Low_complexity 1 29 0 354 353 95 5 chr13 53525885 53526075 -48347094 + MIR SINE MIR 45 251 -11 3725 187 32 43 chr13 53526521 53527104 -48346065 + L1MC1 LINE L1 5509 6082 -251 2458 53 7 0 chr13 53527104 53527408 -48345761 - AluY SINE Alu -5 306 1 3725 187 32 43 chr13 53527408 53527657 -48345512 + L1MC1 LINE L1 6082 6332 -1 261 344 55 6 chr13 53527705 53527888 -48345281 - L2 LINE L2 -1305 2009 1818 455 293 26 79 chr13 53528303 53528569 -48344600 - MIR SINE MIR -9 253 2 648 220 7 7 chr13 53528583 53528724 -48344445 - L1PB4 LINE L1 -9 6147 6007 1904 239 24 9 chr13 53529088 53529507 -48343662 - MSTB LTR MaLR 0 426 2 504 301 43 60 chr13 53531071 53531353 -48341816 - L3 LINE CR1 -469 1108 832 2159 126 7 0 chr13 53531694 53532004 -48341165 - AluSx SINE Alu 0 312 1 21 0 0 0 chr13 53532136 53532157 -48341012 + AT_rich Low_complexity Low_complexity 1 21 0 1207 219 21 0 chr13 53532877 53533038 -48340131 - AluJb SINE Alu -21 291 122 180 0 0 0 chr13 53533038 53533058 -48340111 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1207 219 21 0 chr13 53533058 53533138 -48340031 - AluJb SINE Alu -190 122 45 842 338 41 30 chr13 53533855 53534317 -48338852 + MER69 DNA AcHobo 5 471 -2055 896 208 6 0 chr13 53534800 53534968 -48338201 - L1MC/D LINE L1 -726 5607 5439 507 124 0 67 chr13 53535300 53535389 -48337780 - MLT2C1 LTR ERVL -8 389 307 2006 87 0 31 chr13 53535432 53535721 -48337448 + AluSc SINE Alu 1 280 -29 808 108 9 0 chr13 53535721 53535832 -48337337 + AluY SINE Alu 2 113 -198 1854 101 17 27 chr13 53535960 53536257 -48336912 + AluY SINE Alu 1 294 -17 982 130 11 0 chr13 53536257 53536434 -48336735 + GA-rich Low_complexity Low_complexity 2 180 0 351 59 88 0 chr13 53536449 53536517 -48336652 + GA-rich Low_complexity Low_complexity 4 77 0 230 216 0 20 chr13 53536521 53536572 -48336597 - MLT2C1 LTR ERVL -140 274 225 2151 116 3 3 chr13 53537134 53537436 -48335733 + AluSp SINE Alu 1 302 -11 21 36 0 0 chr13 53539212 53539240 -48333929 + AT_rich Low_complexity Low_complexity 1 28 0 566 271 12 12 chr13 53539574 53539740 -48333429 - L1MC4a LINE L1 -1918 5890 5725 7292 39 0 17 chr13 53539740 53540728 -48332441 - L1PA4 LINE L1 0 6155 5172 10271 36 6 0 chr13 53540728 53541983 -48331186 + L1P LINE L1 3556 4818 -1328 259 251 103 57 chr13 53542476 53542651 -48330518 - L1ME3A LINE L1 -219 5951 5769 195 42 0 0 chr13 53542829 53542853 -48330316 + (TATG)n Simple_repeat Simple_repeat 4 27 0 312 232 0 24 chr13 53542853 53542935 -48330234 + MER90 LTR ERV1 490 569 -6 306 335 27 49 chr13 53543764 53543949 -48329220 - MIR SINE MIR 0 262 82 1347 247 64 64 chr13 53544345 53544864 -48328305 + LTR40a LTR ERVL 1 519 0 261 0 0 0 chr13 53545687 53545716 -48327453 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 542 262 125 16 chr13 53545939 53546187 -48326982 - MER5C DNA MER1_type -43 281 7 1956 127 3 0 chr13 53546732 53547015 -48326154 - AluSc SINE Alu -25 284 1 233 277 99 122 chr13 53548488 53548831 -48324338 - MLT1J LTR MaLR -80 431 97 1440 114 14 5 chr13 53549424 53549635 -48323534 - AluSg/x SINE Alu -15 297 85 2309 92 6 3 chr13 53549973 53550299 -48322870 - L1P4 LINE L1 -429 5734 5408 2028 120 16 7 chr13 53551056 53551365 -48321804 - AluSq SINE Alu -1 312 1 453 334 124 58 chr13 53551510 53552056 -48321113 + L2 LINE L2 2710 3311 -2 22 0 0 0 chr13 53553509 53553531 -48319638 + AT_rich Low_complexity Low_complexity 1 22 0 4526 74 28 16 chr13 53553537 53554568 -48318601 + MER11A LTR ERVK 1 1266 0 189 0 0 0 chr13 53554920 53554941 -48318228 + (CA)n Simple_repeat Simple_repeat 1 21 0 471 336 60 8 chr13 53555831 53556066 -48317103 - L2 LINE L2 -247 3066 2820 1484 278 62 27 chr13 53557075 53557769 -48315400 - MER89-int LTR ERV1 -3796 3005 148 789 230 26 96 chr13 53557813 53558156 -48315013 - MER89-int LTR ERV1 -4258 2543 2225 192 125 0 0 chr13 53558512 53558544 -48314625 + (GA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr13 53558698 53558719 -48314450 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 53559040 53559070 -48314099 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 53559178 53559205 -48313964 + AT_rich Low_complexity Low_complexity 1 27 0 511 352 75 29 chr13 53559322 53559706 -48313463 - MLT1H LTR MaLR -110 439 38 276 254 16 0 chr13 53559706 53559769 -48313400 - MLT1H LTR MaLR -484 65 2 2447 53 0 7 chr13 53560561 53560862 -48312307 + AluY SINE Alu 1 299 -12 234 116 0 0 chr13 53561421 53561464 -48311705 + (GA)n Simple_repeat Simple_repeat 2 44 0 200 271 17 0 chr13 53561469 53561528 -48311641 + GA-rich Low_complexity Low_complexity 2 61 0 21 57 0 0 chr13 53562413 53562448 -48310721 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr13 53562613 53562656 -48310513 + AT_rich Low_complexity Low_complexity 1 43 0 2494 58 3 0 chr13 53563248 53563558 -48309611 + AluY SINE Alu 1 311 0 22 35 0 0 chr13 53564412 53564441 -48308728 + AT_rich Low_complexity Low_complexity 1 29 0 2368 131 27 5 chr13 53564969 53565336 -48307833 + THE1C LTR MaLR 1 375 0 36 94 0 0 chr13 53565416 53565522 -48307647 + AT_rich Low_complexity Low_complexity 1 106 0 547 313 28 0 chr13 53566114 53566293 -48306876 - MLT1H LTR MaLR -249 300 117 378 242 15 68 chr13 53566324 53566456 -48306713 + L2 LINE L2 3189 3313 0 264 30 0 0 chr13 53566634 53566667 -48306502 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 258 32 0 0 chr13 53567241 53567272 -48305897 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr13 53567663 53567684 -48305485 + AT_rich Low_complexity Low_complexity 1 21 0 1324 239 104 19 chr13 53568028 53568497 -48304672 - MER67D LTR ERV1 -3 511 3 15129 200 25 18 chr13 53568754 53572683 -48300486 - L1PA7 LINE L1 -48 6106 2156 1259 167 72 0 chr13 53572676 53572897 -48300272 + L1PA13 LINE L1 1786 2022 -4817 * 27 0 0 0 chr13 53572897 53572924 -48300245 + AT_rich Low_complexity Low_complexity 1 27 0 282 142 40 4 chr13 53573060 53573122 -48300047 + L1PA13 LINE L1 2817 2886 -3963 213 39 0 0 chr13 53573542 53573568 -48299601 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 53574366 53574387 -48298782 + AT_rich Low_complexity Low_complexity 1 21 0 470 48 16 0 chr13 53574729 53574792 -48298377 + MADE1 DNA Mariner 1 64 -16 208 121 0 0 chr13 53574831 53574864 -48298305 + (TG)n Simple_repeat Simple_repeat 2 34 0 412 233 14 0 chr13 53575186 53575332 -48297837 + (TA)n Simple_repeat Simple_repeat 1 148 0 2391 124 36 10 chr13 53576511 53576923 -48296246 - L1MA3 LINE L1 0 6305 5883 23 108 0 0 chr13 53577810 53577903 -48295266 + AT_rich Low_complexity Low_complexity 1 93 0 321 271 10 67 chr13 53578967 53579169 -48294000 + L1MCa LINE L1 5 171 -5874 * 1948 239 67 61 chr13 53579148 53580409 -48292760 + L1MC3 LINE L1 5114 5821 -743 2858 228 46 23 chr13 53580437 53581221 -48291948 + L1MC3 LINE L1 6984 7785 0 30 83 0 0 chr13 53582288 53582360 -48290809 + AT_rich Low_complexity Low_complexity 1 72 0 25 0 0 0 chr13 53583645 53583670 -48289499 + AT_rich Low_complexity Low_complexity 1 25 0 1585 183 0 29 chr13 53583968 53584280 -48288889 - AluSq SINE Alu -9 304 2 1667 174 7 0 chr13 53584598 53584903 -48288266 + AluSx SINE Alu 1 307 -5 213 39 0 0 chr13 53585370 53585396 -48287773 + (T)n Simple_repeat Simple_repeat 1 26 0 217 159 32 0 chr13 53588199 53588262 -48284907 + (TA)n Simple_repeat Simple_repeat 2 66 0 748 247 154 117 chr13 53588490 53589546 -48283623 + MER52A LTR ERV1 3 1755 0 1382 250 148 6 chr13 53590042 53590522 -48282647 - L1MD3 LINE L1 -9 7986 7439 493 236 24 8 chr13 53590546 53590669 -48282500 - MLT1F1 LTR MaLR -442 125 1 869 273 109 11 chr13 53590670 53591258 -48281911 - L1MD3 LINE L1 -695 7090 6588 4473 128 35 3 chr13 53591272 53591997 -48281172 - L1PA15 LINE L1 -6 6159 5412 7709 182 29 27 chr13 53591999 53594733 -48278436 + L1MA5 LINE L1 3554 6296 -4 274 336 25 33 chr13 53594831 53594953 -48278216 - MIR SINE MIR -123 139 19 577 144 43 21 chr13 53595285 53595549 -48277620 + AluJ SINE Alu 1 312 0 414 293 17 0 chr13 53595784 53595900 -48277269 - MIR SINE MIR -71 191 74 25 31 0 0 chr13 53596262 53596294 -48276875 + AT_rich Low_complexity Low_complexity 1 32 0 1868 156 3 0 chr13 53596850 53597138 -48276031 + AluSx SINE Alu 1 289 -23 28 0 0 0 chr13 53597139 53597167 -48276002 + AT_rich Low_complexity Low_complexity 1 28 0 230 188 0 21 chr13 53597188 53597236 -48275933 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 251 211 19 0 chr13 53597990 53598042 -48275127 + L1MC4 LINE L1 7636 7688 -354 495 223 86 7 chr13 53598047 53598186 -48274983 + L1MC4 LINE L1 7878 8027 -15 256 214 36 27 chr13 53598569 53598681 -48274488 - L1MEc LINE L1 -4086 2310 2198 331 386 47 14 chr13 53598750 53598965 -48274204 - MLT1I LTR MaLR -78 331 110 190 276 190 0 chr13 53699407 53699465 -48173704 - L2 LINE L2 -55 3258 3190 308 293 15 8 chr13 53700404 53700537 -48172632 + L1ME LINE L1 5538 5671 -450 265 341 107 23 chr13 53700903 53701164 -48172005 + L2 LINE L2 2219 2501 -813 294 259 65 56 chr13 53701666 53701774 -48171395 + MLT1J2 LTR MaLR 106 214 -236 1406 301 95 16 chr13 53702949 53703239 -48169930 + L1MEc LINE L1 38 304 -6092 336 102 0 0 chr13 53703239 53703288 -48169881 + (CA)n Simple_repeat Simple_repeat 2 50 0 1406 301 95 16 chr13 53703288 53703671 -48169498 + L1MEc LINE L1 304 764 -5632 649 320 57 9 chr13 53703653 53703969 -48169200 + L1MEc LINE L1 1486 1816 -4580 * 980 227 46 33 chr13 53703985 53704380 -48168789 + L1MEc LINE L1 2153 2511 -3704 359 282 86 4 chr13 53704383 53704592 -48168577 + L1MA10 LINE L1 5952 6332 -2 1981 267 67 30 chr13 53704624 53705421 -48167748 - L1M4 LINE L1 -2038 4108 3283 237 319 52 22 chr13 53705951 53706086 -48167083 - L2 LINE L2 -957 2357 2219 308 293 15 8 chr13 53706452 53706585 -48166584 - L1ME LINE L1 -450 5671 5538 182 333 156 0 chr13 53707526 53707616 -48165553 + L2 LINE L2 3192 3295 -18 214 329 66 15 chr13 53709828 53709965 -48163204 + L2 LINE L2 3156 3299 -14 21 36 0 0 chr13 53710363 53710391 -48162778 + AT_rich Low_complexity Low_complexity 1 28 0 27 96 0 0 chr13 53710405 53710488 -48162681 + AT_rich Low_complexity Low_complexity 1 83 0 28 48 0 0 chr13 53710730 53710772 -48162397 + AT_rich Low_complexity Low_complexity 1 42 0 3585 133 15 11 chr13 53711096 53711711 -48161458 - L1MA3 LINE L1 -1 6304 5688 20591 160 42 30 chr13 53711721 53713775 -48159394 - L1 LINE L1 -2334 5231 3204 1295 192 138 0 chr13 53713775 53714035 -48159134 - AluJb SINE Alu -14 298 3 20591 160 42 30 chr13 53714035 53714129 -48159040 - L1 LINE L1 -4361 3204 3113 2199 67 0 34 chr13 53714129 53714427 -48158742 - AluY SINE Alu -23 288 1 20591 160 42 30 chr13 53714427 53715082 -48158087 - L1 LINE L1 -4452 3113 2468 2170 117 0 3 chr13 53715082 53715389 -48157780 + AluSg SINE Alu 1 306 -4 20591 160 42 30 chr13 53715389 53717725 -48155444 - L1 LINE L1 -5097 2468 17 231 61 0 0 chr13 53718134 53718167 -48155002 + (TC)n Simple_repeat Simple_repeat 2 34 0 267 79 0 0 chr13 53718167 53718205 -48154964 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 32 0 0 chr13 53719132 53719163 -48154006 + AT_rich Low_complexity Low_complexity 1 31 0 27 62 0 0 chr13 53719709 53719757 -48153412 + AT_rich Low_complexity Low_complexity 1 48 0 2064 178 43 12 chr13 53720567 53720982 -48152187 + MSTA LTR MaLR 1 428 0 8356 198 17 25 chr13 53720982 53721464 -48151705 + MSTA-int LTR MaLR 1 485 -1166 1823 128 0 69 chr13 53721464 53721818 -48151351 + AluSx SINE Alu 1 333 0 8356 198 17 25 chr13 53721818 53722933 -48150236 + MSTA-int LTR MaLR 485 1588 -63 2077 119 13 0 chr13 53722933 53723235 -48149934 - AluSx SINE Alu -1 311 6 8356 198 17 25 chr13 53723235 53723299 -48149870 + MSTA-int LTR MaLR 1588 1651 0 1877 185 67 15 chr13 53723299 53723478 -48149691 + MSTA LTR MaLR 1 169 -259 3098 127 7 50 chr13 53723478 53723495 -48149674 - MER75 DNA T2_type 0 514 498 207 0 0 0 chr13 53723495 53723518 -48149651 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3098 127 7 50 chr13 53723518 53724037 -48149132 - MER75 DNA T2_type -16 498 1 1877 185 67 15 chr13 53724037 53724262 -48148907 + MSTA LTR MaLR 169 426 -2 24 0 0 0 chr13 53725076 53725100 -48148069 + AT_rich Low_complexity Low_complexity 1 24 0 2139 219 28 32 chr13 53725867 53726337 -48146832 - MER70A LTR ERVL -4 468 1 182 391 58 26 chr13 53726571 53726727 -48146442 + MIR3 SINE MIR 42 202 -6 1835 170 7 0 chr13 53726794 53727088 -48146081 - AluSx SINE Alu -16 296 1 219 336 153 24 chr13 53727115 53727493 -48145676 - L2 LINE L2 -929 2385 1959 557 241 27 98 chr13 53727512 53727736 -48145433 - L2 LINE L2 -6 3307 3100 1105 307 78 43 chr13 53727814 53728378 -48144791 - L2 LINE L2 -576 2738 2155 180 111 0 0 chr13 53729168 53729195 -48143974 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 53729955 53729978 -48143191 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr13 53730873 53730907 -48142262 + (TA)n Simple_repeat Simple_repeat 2 35 0 8323 54 6 0 chr13 53731231 53733067 -48140102 - L1PA5 LINE L1 -2 6152 4311 1916 130 0 0 chr13 53733071 53733341 -48139828 - AluY SINE Alu -39 272 3 1691 164 50 10 chr13 53733760 53734059 -48139110 - AluSx SINE Alu -1 311 1 1270 206 34 120 chr13 53734499 53735012 -48138157 - MER67D LTR ERV1 0 661 81 1733 148 58 36 chr13 53735012 53735377 -48137792 - THE1C LTR MaLR 0 375 3 1270 206 34 120 chr13 53735377 53735450 -48137719 - MER67D LTR ERV1 -580 81 3 254 206 213 92 chr13 53735588 53735729 -48137440 + MLT1J LTR MaLR 352 509 -2 1412 121 80 0 chr13 53735794 53736007 -48137162 + MER4E LTR ERV1 1 231 -535 4383 108 68 30 chr13 53736007 53737027 -48136142 + MER11A LTR ERVK 1 1266 0 3677 89 45 7 chr13 53737027 53737557 -48135612 + MER4E LTR ERV1 217 766 0 2357 84 0 10 chr13 53738809 53739120 -48134049 - AluY SINE Alu -3 308 1 289 246 16 0 chr13 53739293 53739354 -48133815 - L2 LINE L2 -5 3308 3247 231 294 64 28 chr13 53739472 53739581 -48133588 + MIR SINE MIR 99 211 -51 24 32 0 0 chr13 53740263 53740294 -48132875 + AT_rich Low_complexity Low_complexity 1 31 0 235 266 97 40 chr13 53740890 53741014 -48132155 + L2 LINE L2 3183 3313 0 222 189 38 0 chr13 53741508 53741561 -48131608 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 247 181 28 28 chr13 53741578 53741650 -48131519 + GA-rich Low_complexity Low_complexity 3 74 0 233 267 0 0 chr13 53741650 53741710 -48131459 + (TATG)n Simple_repeat Simple_repeat 2 61 0 329 288 121 42 chr13 53742135 53742350 -48130819 + HAL1 LINE L1 2255 2486 -21 1932 199 30 39 chr13 53742446 53742869 -48130300 + MLT2C2 LTR ERVL 1 421 -43 261 57 0 0 chr13 53742869 53742904 -48130265 + (CA)n Simple_repeat Simple_repeat 2 36 0 1932 199 30 39 chr13 53742904 53742948 -48130221 + MLT2C2 LTR ERVL 421 464 0 33775 100 26 9 chr13 53742978 53748003 -48125166 + L1PA6 LINE L1 11 5124 -1022 6584 63 24 3 chr13 53748068 53749113 -48124056 + L1PA6 LINE L1 5098 6149 -5 421 276 16 24 chr13 53749424 53749551 -48123618 + L2 LINE L2 3186 3311 -2 2267 84 7 7 chr13 53749850 53750146 -48123023 + AluSq SINE Alu 1 296 -17 809 208 19 6 chr13 53751095 53751254 -48121915 - MLT1A1 LTR MaLR -2 363 203 565 267 72 53 chr13 53751523 53751841 -48121328 + LTR40a LTR ERVL 181 504 -15 711 209 0 8 chr13 53751985 53752114 -48121055 - FLAM_A SINE Alu -4 129 2 616 281 109 82 chr13 53752328 53752840 -48120329 - MER21B LTR ERV1 -197 666 141 32 95 0 0 chr13 53753024 53753119 -48120050 + AT_rich Low_complexity Low_complexity 1 95 0 194 283 283 19 chr13 53753283 53753389 -48119780 + L3 LINE CR1 1441 1574 -3 201 368 89 16 chr13 53753455 53753702 -48119467 + L2 LINE L2 2376 2640 -674 7208 48 14 0 chr13 53754734 53755767 -48117402 - L1PA5 LINE L1 0 6154 5120 4713 38 0 0 chr13 53755767 53756340 -48116829 + L1PA5 LINE L1 4549 5121 -1025 601 298 76 73 chr13 53756340 53756750 -48116419 + MLT1J LTR MaLR 100 510 -1 465 163 130 24 chr13 53756784 53756907 -48116262 + MER5C DNA MER1_type 1 136 -188 231 288 15 0 chr13 53757407 53757473 -48115696 + GA-rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr13 53757629 53757661 -48115508 + AT_rich Low_complexity Low_complexity 1 32 0 195 89 54 36 chr13 53758385 53758441 -48114728 + A-rich Low_complexity Low_complexity 5 61 0 21 0 0 0 chr13 53758627 53758648 -48114521 + AT_rich Low_complexity Low_complexity 1 21 0 1319 133 0 5 chr13 53759394 53759582 -48113587 + AluSc SINE Alu 108 294 -15 246 157 137 0 chr13 53759708 53759759 -48113410 + MER63 DNA MER1_type 10 693 -369 6869 71 3 1 chr13 53760512 53762284 -48110885 + L1PA8 LINE L1 4390 6165 -7 190 355 0 0 chr13 53762652 53762728 -48110441 - MIR SINE MIR -108 154 79 22 0 0 0 chr13 53762801 53762823 -48110346 + AT_rich Low_complexity Low_complexity 1 22 0 705 230 19 30 chr13 53762901 53763226 -48109943 + L1ME LINE L1 5156 5479 -683 363 356 65 23 chr13 53763640 53763856 -48109313 + MIR SINE MIR 8 232 -30 632 378 117 20 chr13 53763886 53764692 -48108477 - L2 LINE L2 -2133 1181 298 3998 42 57 30 chr13 53765736 53766008 -48107161 + LTR6B LTR ERV1 1 264 -294 2826 3 0 0 chr13 53766008 53766317 -48106852 - AluYa5 SINE Alu -2 309 1 3998 42 57 30 chr13 53766317 53766587 -48106582 + LTR6B LTR ERV1 264 558 0 248 298 107 0 chr13 53767563 53767684 -48105485 + MIR SINE MIR 129 262 0 277 319 42 42 chr13 53769379 53769498 -48103671 - MIR3 SINE MIR -25 183 65 2150 95 26 16 chr13 53769710 53770014 -48103155 + AluSc SINE Alu 1 307 -2 232 208 21 0 chr13 53770435 53770483 -48102686 + MIR SINE MIR 204 252 -10 23 33 0 0 chr13 53771374 53771404 -48101765 + AT_rich Low_complexity Low_complexity 1 30 0 2795 164 91 21 chr13 53771620 53771672 -48101497 + MER7C DNA MER2_type 1 48 -2980 7825 138 21 7 chr13 53771672 53772952 -48100217 + HSMAR2 DNA Mariner 4 1301 -1 2795 164 91 21 chr13 53772952 53773461 -48099708 + MER7C DNA MER2_type 48 601 -1 218 304 143 27 chr13 53773718 53773830 -48099339 - L2 LINE L2 -6 3307 3183 265 308 111 34 chr13 53774246 53774363 -48098806 - L2 LINE L2 -16 3297 3172 24 0 0 0 chr13 53774792 53774816 -48098353 + AT_rich Low_complexity Low_complexity 1 24 0 1531 119 0 0 chr13 53775112 53775330 -48097839 + AluSg/x SINE Alu 84 301 -11 21 57 0 0 chr13 53775680 53775715 -48097454 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr13 53776726 53776760 -48096409 + AT_rich Low_complexity Low_complexity 1 34 0 1857 179 31 31 chr13 53777669 53778059 -48095110 - MLT1B LTR MaLR 0 390 1 24 67 0 0 chr13 53778158 53778203 -48094966 + AT_rich Low_complexity Low_complexity 1 45 0 200 253 48 36 chr13 53779054 53779137 -48094032 - MIR SINE MIR -61 201 118 36 0 0 0 chr13 53779626 53779662 -48093507 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 53779799 53779821 -48093348 + AT_rich Low_complexity Low_complexity 1 22 0 2529 55 3 0 chr13 53780909 53781217 -48091952 + AluY SINE Alu 1 309 -2 1571 189 24 7 chr13 53781799 53782096 -48091073 - AluJo SINE Alu -8 304 3 2263 108 3 0 chr13 53782355 53782662 -48090507 - AluSp SINE Alu -5 308 1 1153 204 9 4 chr13 53782946 53783172 -48089997 - MER73 LTR ERVL 0 644 418 2035 214 71 16 chr13 53783176 53783625 -48089544 - MER54A LTR ERVL -410 491 18 4295 97 3 3 chr13 53784835 53785435 -48087734 - MER4A LTR ERV1 0 600 1 496 322 123 29 chr13 53785457 53785628 -48087541 + L2 LINE L2 2601 2755 -558 3896 135 16 8 chr13 53785628 53786258 -48086911 + MER41B LTR ERV1 1 635 0 496 322 123 29 chr13 53786258 53786731 -48086438 + L2 LINE L2 2755 3313 0 779 323 44 36 chr13 53787680 53788067 -48085102 + LTR16C LTR ERVL 3 392 -99 1088 264 24 57 chr13 53788156 53788527 -48084642 - MLT1C LTR MaLR -36 431 73 334 294 9 0 chr13 53788616 53788710 -48084459 + LTR16C LTR ERVL 349 478 -10 905 353 66 39 chr13 53788765 53789910 -48083259 + HERV16 LTR ERVL 744 1983 -3425 237 329 145 53 chr13 53790910 53791062 -48082107 + LTR16C LTR ERVL 89 254 -237 307 286 126 0 chr13 53791110 53791229 -48081940 + LTR16C LTR ERVL 358 491 0 7355 89 6 2 chr13 53791282 53792247 -48080922 + LTR5 LTR ERVK 1 969 0 2227 132 8 14 chr13 53792715 53793070 -48080099 - THE1A LTR MaLR -2 353 1 1787 215 118 71 chr13 53793644 53794167 -48079002 + MER50 LTR ERV1 10 575 -159 1920 115 33 39 chr13 53794167 53794472 -48078697 - AluSx SINE Alu -9 303 1 1787 215 118 71 chr13 53794472 53794640 -48078529 + MER50 LTR ERV1 575 734 0 2432 67 3 3 chr13 53795835 53796135 -48077034 - AluY SINE Alu -11 300 1 1492 240 64 21 chr13 53796629 53797066 -48076103 - MLT1C LTR MaLR 0 467 12 220 189 0 0 chr13 53797170 53797207 -48075962 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr13 53797449 53797470 -48075699 + AT_rich Low_complexity Low_complexity 1 21 0 2246 70 28 0 chr13 53798168 53798453 -48074716 + AluSc SINE Alu 1 293 -16 207 0 0 0 chr13 53798456 53798479 -48074690 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 310 269 29 0 chr13 53798998 53799102 -48074067 + MER103 DNA DNA 45 151 -15 2224 108 0 22 chr13 53799563 53799878 -48073291 - AluSg SINE Alu -2 308 1 4631 111 1 42 chr13 53800794 53801045 -48072124 - LTR8 LTR ERV1 0 691 431 2221 140 39 0 chr13 53801045 53801402 -48071767 + THE1C LTR MaLR 1 371 -4 4631 111 1 42 chr13 53801402 53801605 -48071564 - LTR8 LTR ERV1 -260 431 221 2153 99 0 26 chr13 53801605 53801907 -48071262 - AluY SINE Alu -17 294 1 4631 111 1 42 chr13 53801907 53802169 -48071000 - LTR8 LTR ERV1 -470 221 3 2025 198 72 41 chr13 53802274 53802759 -48070410 + MLT1D LTR MaLR 1 500 -5 180 0 0 0 chr13 53802922 53802942 -48070227 + (CAA)n Simple_repeat Simple_repeat 2 21 0 336 312 64 0 chr13 53803205 53803314 -48069855 + L2 LINE L2 3194 3309 -4 1144 231 109 16 chr13 53803415 53803683 -48069486 + MER89 LTR ERV1 4 246 -313 3955 179 48 24 chr13 53803683 53804489 -48068680 - LTR1B LTR ERV1 0 826 1 1144 231 109 16 chr13 53804489 53804636 -48068533 + MER89 LTR ERV1 246 559 0 23 33 0 0 chr13 53804786 53804816 -48068353 + AT_rich Low_complexity Low_complexity 1 30 0 182 330 75 43 chr13 53804952 53805046 -48068123 - L2 LINE L2 -37 3235 3139 1907 144 53 28 chr13 53805057 53805412 -48067757 + THE1B LTR MaLR 1 364 0 628 294 17 0 chr13 53806597 53806774 -48066395 + MIR SINE MIR 11 190 -72 244 329 14 0 chr13 53807780 53807850 -48065319 - L2 LINE L2 -4 3309 3239 290 406 36 0 chr13 53807979 53808117 -48065052 - MIR SINE MIR -117 145 3 504 117 0 0 chr13 53808836 53808913 -48064256 + (TA)n Simple_repeat Simple_repeat 1 77 0 693 248 74 54 chr13 53809305 53809547 -48063622 + MIR SINE MIR 6 252 -10 287 178 0 0 chr13 53809713 53809758 -48063411 - MER63 DNA MER1_type -302 760 716 1567 232 93 45 chr13 53809955 53810512 -48062657 + L1ME2 LINE L1 5571 6154 -10 25 51 0 0 chr13 53811493 53811532 -48061637 + AT_rich Low_complexity Low_complexity 1 39 0 1690 252 107 2 chr13 53811765 53812281 -48060888 + MER92B LTR ERV1 60 629 -7 325 321 0 0 chr13 53812729 53812810 -48060359 + L2 LINE L2 3230 3310 -3 23 0 0 0 chr13 53813092 53813115 -48060054 + AT_rich Low_complexity Low_complexity 1 23 0 1535 198 50 59 chr13 53813529 53813968 -48059201 + MLT1C LTR MaLR 17 451 -16 517 298 160 33 chr13 53814185 53814584 -48058585 - MLT1J2 LTR MaLR 0 450 1 1025 189 69 152 chr13 53815803 53815962 -48057207 + MLT1A2 LTR MaLR 1 172 -202 1605 194 7 0 chr13 53815962 53816240 -48056929 + AluSx SINE Alu 1 280 -32 1025 189 69 152 chr13 53816240 53816488 -48056681 + MLT1A2 LTR MaLR 172 374 0 35 24 0 0 chr13 53817968 53818010 -48055159 + AT_rich Low_complexity Low_complexity 1 42 0 332 230 133 100 chr13 53818024 53818294 -48054875 - LTR37B LTR ERV1 -74 394 116 262 331 18 0 chr13 53819625 53819716 -48053453 - MIR SINE MIR -48 160 61 190 390 73 8 chr13 53820183 53820306 -48052863 + L2 LINE L2 3138 3268 -4 184 361 68 44 chr13 53820498 53820655 -48052514 - MIR SINE MIR 0 262 95 1589 189 3 13 chr13 53820655 53820956 -48052213 + AluJo SINE Alu 11 308 -4 184 361 68 44 chr13 53820956 53821050 -48052119 - MIR SINE MIR -167 95 5 693 289 126 33 chr13 53822343 53822772 -48050397 - LTR50 LTR ERVL 0 795 327 2520 56 3 0 chr13 53824249 53824551 -48048618 + AluY SINE Alu 1 303 -8 1571 189 24 7 chr13 53825130 53825427 -48047742 - AluJo SINE Alu -8 304 3 2292 101 3 0 chr13 53825686 53825993 -48047176 - AluSp SINE Alu -5 308 1 1153 204 9 4 chr13 53826276 53826502 -48046667 - MER73 LTR ERVL 0 644 418 2035 214 71 16 chr13 53826506 53826955 -48046214 - MER54A LTR ERVL -410 491 18 21 0 0 0 chr13 53828344 53828365 -48044804 + AT_rich Low_complexity Low_complexity 1 21 0 8591 197 37 11 chr13 53828937 53830919 -48042250 - L1MA8 LINE L1 -1406 4740 2707 4533 182 54 6 chr13 53830921 53832432 -48040737 + L1MA8 LINE L1 4723 6289 -2 423 232 46 73 chr13 53832657 53832808 -48040361 + MIR SINE MIR 116 262 0 392 315 83 24 chr13 53832907 53833147 -48040022 - L1M4 LINE L1 -1279 4867 4615 758 242 71 36 chr13 53833365 53833617 -48039552 + LTR40b LTR ERVL 202 462 0 22 56 0 0 chr13 53833682 53833718 -48039451 + AT_rich Low_complexity Low_complexity 1 36 0 637 307 66 47 chr13 53833721 53834252 -48038917 - L1MEd LINE L1 -4883 1236 696 247 323 55 31 chr13 53834566 53834693 -48038476 - MER68 LTR ERV1 -170 392 263 1796 151 14 3 chr13 53834694 53834985 -48038184 - AluSx SINE Alu -18 294 1 258 314 0 0 chr13 53835507 53835577 -48037592 - L2 LINE L2 0 3313 3244 21 36 0 0 chr13 53837416 53837444 -48035725 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr13 53837498 53837522 -48035647 + AT_rich Low_complexity Low_complexity 1 24 0 315 0 0 0 chr13 53838571 53838606 -48034563 + (CA)n Simple_repeat Simple_repeat 2 36 0 437 338 154 0 chr13 53839190 53839462 -48033707 + MER102b DNA MER1_type 6 319 -22 265 270 11 0 chr13 53839696 53839785 -48033384 + (TA)n Simple_repeat Simple_repeat 1 90 0 198 0 0 0 chr13 53839794 53839816 -48033353 + (CA)n Simple_repeat Simple_repeat 2 23 0 248 77 26 0 chr13 53839817 53839856 -48033313 + (GA)n Simple_repeat Simple_repeat 1 40 0 211 149 27 47 chr13 53839887 53840035 -48033134 + (TA)n Simple_repeat Simple_repeat 2 146 0 2022 79 90 0 chr13 53840146 53840423 -48032746 - AluSq SINE Alu -11 302 1 303 152 0 0 chr13 53840423 53840469 -48032700 + MLT2D LTR ERVL 2 47 -367 924 243 61 3 chr13 53840491 53840787 -48032382 - L1ME2 LINE L1 -127 6037 5725 265 277 32 0 chr13 53840782 53840876 -48032293 - L1ME2 LINE L1 -671 5491 5395 * 1789 246 64 52 chr13 53841229 53841819 -48031350 - MER77 LTR ERV1 -8 597 1 514 274 23 47 chr13 53841821 53842036 -48031133 - L1MB7 LINE L1 -31 6153 5944 * 1513 256 94 4 chr13 53842034 53842515 -48030654 - L1ME2 LINE L1 -861 5285 4762 1176 223 232 7 chr13 53842530 53842978 -48030191 - L1MA7 LINE L1 -7 6284 5736 642 261 12 6 chr13 53842969 53843130 -48030039 - MLT-int LTR MaLR -988 747 586 * 5720 131 33 0 chr13 53843159 53844167 -48029002 - L1PA15 LINE L1 -13 6152 5115 2052 264 60 0 chr13 53844170 53844652 -48028517 - L1PA13 LINE L1 -6272 515 5 2692 185 91 9 chr13 53844672 53845223 -48027946 - MLT1A1-int LTR MaLR -1139 596 1 954 219 63 115 chr13 53845225 53845608 -48027561 - MLT1A1 LTR MaLR -2 363 1 22 0 0 0 chr13 53846590 53846612 -48026557 + AT_rich Low_complexity Low_complexity 1 22 0 1176 171 44 0 chr13 53846718 53846946 -48026223 + Tigger5 DNA MER2_type 2086 2323 0 225 246 0 0 chr13 53846948 53847013 -48026156 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1934 140 7 7 chr13 53847254 53847561 -48025608 + AluSx SINE Alu 1 307 -5 25 65 0 0 chr13 53847887 53847933 -48025236 + AT_rich Low_complexity Low_complexity 1 46 0 1057 254 45 45 chr13 53848141 53848605 -48024564 - MLT2C2 LTR ERVL 0 464 1 4672 211 58 5 chr13 53848656 53848925 -48024244 - ERVL-C2 LTR ERVL -76 5688 5435 1831 176 38 24 chr13 53848925 53849295 -48023874 - THE1C LTR MaLR 0 375 1 4672 211 58 5 chr13 53849295 53849900 -48023269 - ERVL-C2 LTR ERVL -329 5435 4752 2286 143 42 39 chr13 53849900 53850333 -48022836 + MER61C LTR ERV1 1 434 0 4672 211 58 5 chr13 53850333 53850450 -48022719 - ERVL-C2 LTR ERVL -1012 4752 4643 474 202 32 8 chr13 53850450 53850574 -48022595 - MLT2B1 LTR ERVL -391 129 3 242 293 28 28 chr13 53851345 53851451 -48021718 - L2 LINE L2 -16 3297 3192 266 256 8 38 chr13 53851966 53852022 -48021147 + A-rich Low_complexity Low_complexity 2 58 -72 1499 195 18 3 chr13 53852022 53852304 -48020865 + AluJo SINE Alu 2 287 -25 266 256 8 38 chr13 53852304 53852380 -48020789 + A-rich Low_complexity Low_complexity 58 130 0 288 193 199 40 chr13 53852401 53852577 -48020592 + L1 LINE L1 2147 2350 -3796 21 0 0 0 chr13 53852619 53852640 -48020529 + AT_rich Low_complexity Low_complexity 1 21 0 2927 189 32 7 chr13 53852641 53853240 -48019929 - MER67C LTR ERV1 0 710 97 5974 85 8 4 chr13 53853323 53854157 -48019012 - L1PA8A LINE L1 -28 6103 5266 345 256 22 101 chr13 53854261 53854445 -48018724 + L1 LINE L1 2418 2582 -3564 1947 200 42 12 chr13 53854445 53854855 -48018314 - MSTB LTR MaLR 0 426 5 345 256 22 101 chr13 53854855 53854897 -48018272 + L1 LINE L1 2582 2626 -3520 880 211 39 148 chr13 53855117 53855314 -48017855 - MLT1B LTR MaLR -3 387 261 681 101 0 0 chr13 53855314 53855413 -48017756 + (TA)n Simple_repeat Simple_repeat 1 99 0 880 211 39 148 chr13 53855413 53855647 -48017522 - MLT1B LTR MaLR -129 261 3 331 340 63 5 chr13 53855688 53855879 -48017290 + L1 LINE L1 4233 4434 -1712 241 324 50 22 chr13 53855920 53856102 -48017067 + L1 LINE L1 4585 4771 -1375 2452 60 0 0 chr13 53856481 53856779 -48016390 + AluY SINE Alu 3 300 -11 556 305 72 26 chr13 53857021 53857203 -48015966 + L1ME3 LINE L1 5471 5643 -519 1920 128 144 11 chr13 53857203 53857577 -48015592 + MSTA LTR MaLR 5 428 0 556 305 72 26 chr13 53857577 53857771 -48015398 + L1ME3 LINE L1 5643 5864 -298 2175 96 0 30 chr13 53857800 53858102 -48015067 + AluSp SINE Alu 3 295 -18 1600 143 78 24 chr13 53859308 53859601 -48013568 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr13 53859725 53859746 -48013423 + AT_rich Low_complexity Low_complexity 1 21 0 264 185 0 0 chr13 53859746 53859800 -48013369 + (CA)n Simple_repeat Simple_repeat 2 55 0 1368 101 0 5 chr13 53860275 53860464 -48012705 - AluSg/x SINE Alu -13 297 110 947 121 0 14 chr13 53860545 53860686 -48012483 - AluSq/x SINE Alu -174 139 1 265 369 19 10 chr13 53861949 53862052 -48011117 + L2 LINE L2 2665 2768 -546 1265 179 46 28 chr13 53862097 53862382 -48010787 - AluJo SINE Alu -22 290 1 4601 97 29 1 chr13 53862414 53862766 -48010403 - L1PB1 LINE L1 -3 6148 5807 240 35 0 0 chr13 53862766 53862795 -48010374 + (TG)n Simple_repeat Simple_repeat 1 29 0 4601 97 29 1 chr13 53862795 53863124 -48010045 - L1PB1 LINE L1 -344 5807 5448 1402 209 14 0 chr13 53863124 53863421 -48009748 + L1 LINE L1 4751 5051 -1095 527 226 176 73 chr13 53864083 53864126 -48009043 - MLT1D LTR MaLR 0 505 468 1727 162 23 13 chr13 53864126 53864429 -48008740 + AluSx SINE Alu 2 307 -5 527 226 176 73 chr13 53864429 53864589 -48008580 - MLT1D LTR MaLR -37 468 281 22 35 0 0 chr13 53864594 53864623 -48008546 + AT_rich Low_complexity Low_complexity 1 29 0 252 316 96 22 chr13 53864623 53864759 -48008410 - MIR SINE MIR -15 247 102 180 0 0 0 chr13 53865317 53865337 -48007832 + (T)n Simple_repeat Simple_repeat 1 20 0 1900 244 61 75 chr13 53865725 53866078 -48007091 + L1MD3 LINE L1 6447 6804 -1191 279 0 0 0 chr13 53866078 53866109 -48007060 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1900 244 61 75 chr13 53866109 53866218 -48006951 + L1MD3 LINE L1 6804 6913 -1082 2059 134 0 10 chr13 53866218 53866531 -48006638 + AluSx SINE Alu 3 312 0 1900 244 61 75 chr13 53866531 53866892 -48006277 + L1MD3 LINE L1 6913 7259 -736 240 35 0 0 chr13 53867157 53867186 -48005983 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 146 52 52 chr13 53868169 53868265 -48004904 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 30 45 0 0 chr13 53868524 53868568 -48004601 + AT_rich Low_complexity Low_complexity 1 44 0 31 0 0 0 chr13 53869577 53869608 -48003561 + AT_rich Low_complexity Low_complexity 1 31 0 2167 78 0 0 chr13 53869610 53869923 -48003246 + AluSx SINE Alu 1 313 0 182 298 88 0 chr13 53870052 53870109 -48003060 + L2 LINE L2 3198 3259 -13 279 369 57 23 chr13 53871258 53871434 -48001735 - MIR3 SINE MIR -21 187 6 252 0 0 0 chr13 53872153 53872181 -48000988 + (TC)n Simple_repeat Simple_repeat 1 28 0 299 330 82 51 chr13 53872241 53872789 -48000380 + L2 LINE L2 2140 2704 -610 2085 107 4 4 chr13 53872990 53873303 -47999866 + AluSx SINE Alu 4 316 0 205 250 62 0 chr13 53873550 53873598 -47999571 + L2 LINE L2 3217 3267 -5 240 254 0 0 chr13 53873651 53873706 -47999463 + L2 LINE L2 2699 2753 -561 294 339 242 23 chr13 53873773 53874033 -47999136 + L2 LINE L2 2943 3259 -54 11099 146 35 16 chr13 53874178 53876108 -47997061 - Tigger1 DNA MER2_type 0 2418 452 1545 152 73 146 chr13 53876115 53876582 -47996587 + LTR23 LTR ERV1 5 437 0 2416 183 16 5 chr13 53876588 53877020 -47996149 - Tigger1 DNA MER2_type -1978 440 4 2151 117 0 34 chr13 53878531 53878855 -47994314 + AluSq SINE Alu 1 313 0 223 372 35 18 chr13 53881333 53881446 -47991723 + L2 LINE L2 2961 3075 -197 24 53 0 0 chr13 53881473 53881511 -47991658 + AT_rich Low_complexity Low_complexity 1 38 0 39 22 0 0 chr13 53882819 53882865 -47990304 + AT_rich Low_complexity Low_complexity 1 46 0 217 233 0 0 chr13 53883080 53883123 -47990046 + (TATG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr13 53884380 53884410 -47988759 + AT_rich Low_complexity Low_complexity 1 30 0 381 75 0 0 chr13 53885446 53885499 -47987670 + (TG)n Simple_repeat Simple_repeat 2 54 0 193 359 78 8 chr13 53885896 53886024 -47987145 + MIR SINE MIR 17 153 -55 522 194 65 0 chr13 53887188 53887296 -47985873 - L1PB4 LINE L1 -3 6153 6039 186 353 33 25 chr13 53887484 53887606 -47985563 - MIR SINE MIR -106 156 34 816 48 145 0 chr13 53887848 53887972 -47985197 + AluY SINE Alu 168 309 -2 476 293 102 59 chr13 53888410 53888871 -47984298 - MLT1J LTR MaLR -8 503 23 242 308 92 30 chr13 53889386 53889691 -47983478 - L1MEd LINE L1 -5193 926 603 23 33 0 0 chr13 53889717 53889747 -47983422 + AT_rich Low_complexity Low_complexity 1 30 0 947 90 0 0 chr13 53890154 53890276 -47982893 + AluY SINE Alu 173 294 -17 647 324 184 10 chr13 53890410 53890920 -47982249 + LTR50 LTR ERVL 82 680 -115 4426 87 11 3 chr13 53890921 53891540 -47981629 - L1PA10 LINE L1 0 6168 5545 3000 133 38 2 chr13 53891541 53892191 -47980978 + L1P5 LINE L1 4838 5505 -663 22 56 0 0 chr13 53892194 53892230 -47980939 + AT_rich Low_complexity Low_complexity 1 36 0 305 119 0 0 chr13 53892288 53892330 -47980839 + L1P5 LINE L1 5517 5558 -593 21 36 0 0 chr13 53892874 53892902 -47980267 + AT_rich Low_complexity Low_complexity 1 28 0 475 73 0 0 chr13 53893721 53893789 -47979380 - Alu SINE Alu -242 68 1 661 217 36 59 chr13 53893841 53894062 -47979107 + MLT1C LTR MaLR 11 226 -164 3942 152 18 20 chr13 53894079 53894785 -47978384 + MER50 LTR ERV1 10 714 -20 909 239 20 0 chr13 53894788 53894985 -47978184 + MLT1C LTR MaLR 267 467 0 2679 123 153 75 chr13 53895020 53895181 -47977988 + MER4A LTR ERV1 1 148 -516 2101 127 32 9 chr13 53895181 53895528 -47977641 - THE1A LTR MaLR 0 355 1 10800 108 21 0 chr13 53895528 53897076 -47976093 - THE1A-int LTR MaLR 0 1580 1 2293 118 8 8 chr13 53897076 53897431 -47975738 - THE1A LTR MaLR 0 355 1 2679 123 153 75 chr13 53897431 53897883 -47975286 + MER4A LTR ERV1 147 664 0 23 0 0 0 chr13 53898533 53898556 -47974613 + AT_rich Low_complexity Low_complexity 1 23 0 1963 161 3 3 chr13 53899353 53899663 -47973506 - AluSx SINE Alu 0 312 3 62 26 0 0 chr13 53900782 53900858 -47972311 + AT_rich Low_complexity Low_complexity 1 76 0 451 332 5 32 chr13 53900927 53901117 -47972052 + MIR SINE MIR 72 256 -6 2747 88 69 7 chr13 53901247 53901622 -47971547 + MLT2A1 LTR ERVL 1 406 -38 567 78 0 0 chr13 53901622 53901699 -47971470 + (TA)n Simple_repeat Simple_repeat 1 77 0 2747 88 69 7 chr13 53901699 53901741 -47971428 + MLT2A1 LTR ERVL 406 444 0 41886 83 16 4 chr13 53901741 53907245 -47965924 + HERVL-A1 LTR ERVL 1 5578 -76 1926 103 44 4 chr13 53907245 53907552 -47965617 - AluSg SINE Alu 0 318 1 41886 83 16 4 chr13 53907552 53907630 -47965539 + HERVL-A1 LTR ERVL 5578 5654 0 2667 103 49 9 chr13 53907630 53908057 -47965112 + MLT2A1 LTR ERVL 1 444 0 833 189 48 48 chr13 53908206 53908412 -47964757 + MER63A DNA MER1_type 5 210 0 2921 194 28 8 chr13 53909029 53909644 -47963525 - L1MB7 LINE L1 -213 5971 5345 304 343 44 15 chr13 53909937 53910074 -47963095 - MIR3 SINE MIR -67 141 1 50 51 0 0 chr13 53910872 53910950 -47962219 + AT_rich Low_complexity Low_complexity 1 78 0 559 138 0 69 chr13 53912100 53912216 -47960953 + L1MA7 LINE L1 6180 6287 -4 301 288 102 0 chr13 53912808 53912926 -47960243 + L1M4 LINE L1 3329 3458 -2688 26 0 0 0 chr13 53913049 53913075 -47960094 + AT_rich Low_complexity Low_complexity 1 26 0 5138 169 21 12 chr13 53913075 53914082 -47959087 - L1MA8 LINE L1 -10 6281 5266 270 206 0 0 chr13 53914101 53914164 -47959005 + (TA)n Simple_repeat Simple_repeat 1 63 0 333 206 0 33 chr13 53916146 53916238 -47956931 - L1MA10 LINE L1 -4 6330 6242 444 294 51 113 chr13 53916238 53916609 -47956560 + L2 LINE L2 2942 3289 -24 28 61 0 0 chr13 53919902 53919951 -47953218 + AT_rich Low_complexity Low_complexity 1 49 0 1682 222 14 25 chr13 53920171 53920532 -47952637 - MER82 DNA MER2_type 0 653 297 1449 189 10 30 chr13 53920532 53920829 -47952340 + AluSx SINE Alu 21 311 -1 1082 222 81 11 chr13 53920835 53921119 -47952050 - MER82 DNA MER2_type -348 305 2 1000 260 102 12 chr13 53921724 53922066 -47951103 - MLT1F LTR MaLR -2 540 168 198 347 105 0 chr13 53922069 53922164 -47951005 + L2 LINE L2 3160 3264 -49 1895 157 20 0 chr13 53922333 53922627 -47950542 - AluSx SINE Alu -7 305 6 392 337 47 77 chr13 53922659 53923063 -47950106 + L1MB2 LINE L1 2 393 -5498 6239 230 28 22 chr13 53923172 53924956 -47948213 + L1MB2 LINE L1 3445 5250 -745 2192 192 29 5 chr13 53924956 53925372 -47947797 - MSTB LTR MaLR 0 426 1 6239 230 28 22 chr13 53925372 53926097 -47947072 + L1MB2 LINE L1 5250 5969 -26 226 216 68 45 chr13 53926411 53926499 -47946670 + MIR SINE MIR 173 262 0 339 254 25 25 chr13 53926869 53926987 -47946182 - MER103 DNA DNA -8 158 41 36 23 0 0 chr13 53927233 53927276 -47945893 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 53927844 53927872 -47945297 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr13 53928321 53928356 -47944813 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 53928660 53928683 -47944486 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 53928708 53928736 -47944433 + AT_rich Low_complexity Low_complexity 1 28 0 246 354 106 35 chr13 53929947 53930323 -47942846 - L2 LINE L2 -89 3224 2822 538 268 89 87 chr13 53930470 53930962 -47942207 - L2 LINE L2 -779 2535 2043 214 153 34 0 chr13 53931010 53931069 -47942100 + (TA)n Simple_repeat Simple_repeat 2 62 0 8723 57 8 1 chr13 53931232 53933131 -47940038 - L1PA5 LINE L1 0 6154 4247 2088 112 7 3 chr13 53934069 53934364 -47938805 + AluSg SINE Alu 1 296 -14 583 271 0 0 chr13 53934475 53934604 -47938565 + MER94 DNA DNA 1 129 -5 872 194 117 93 chr13 53935611 53936034 -47937135 - MER67D LTR ERV1 0 514 135 280 79 0 0 chr13 53937421 53937459 -47935710 + MER57A LTR ERV1 3 40 -363 219 190 0 0 chr13 53937459 53937517 -47935652 + (TA)n Simple_repeat Simple_repeat 2 59 0 13132 188 17 12 chr13 53937524 53940875 -47932294 - L1PB1 LINE L1 0 6151 2818 1804 159 11 0 chr13 53940875 53941158 -47932011 - AluSg SINE Alu -15 295 10 13132 188 17 12 chr13 53941158 53941674 -47931495 - L1PB1 LINE L1 -3333 2818 2255 2001 108 201 11 chr13 53941674 53942052 -47931117 - LTR7 LTR ERV1 0 450 1 13132 188 17 12 chr13 53942052 53942104 -47931065 - L1PB1 LINE L1 -3896 2255 2205 5155 189 24 5 chr13 53942241 53943354 -47929815 - L1 LINE L1 -1283 4863 3730 336 308 60 33 chr13 53943440 53943622 -47929547 + L1M4 LINE L1 3659 3845 -2301 2317 179 24 11 chr13 53943968 53944421 -47928748 - LOR1b LTR ERV1 0 461 3 390 103 0 17 chr13 53944531 53944589 -47928580 - LOR1b-int LTR ERV1 -33 8087 8031 1951 95 33 4 chr13 53944590 53944864 -47928305 - LOR1-int LTR ERV1 -2057 6063 5782 * 28694 125 58 25 chr13 53944844 53947396 -47925773 - LOR1-int LTR ERV1 -2596 5524 3060 186 43 0 0 chr13 53947396 53947419 -47925750 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 28694 125 58 25 chr13 53947419 53948568 -47924601 - LOR1-int LTR ERV1 -5060 3060 1951 1733 138 78 0 chr13 53948568 53948837 -47924332 - AluSg SINE Alu -18 292 3 28694 125 58 25 chr13 53948837 53950284 -47922885 - LOR1-int LTR ERV1 -6169 1951 200 41141 66 5 2 chr13 53950427 53956497 -47916672 + L1PA5 LINE L1 1 6089 -65 6863 59 5 2 chr13 53956600 53957720 -47915449 + L1PA5 LINE L1 5031 6151 -3 2139 128 7 0 chr13 53958513 53958819 -47914350 - AluSc SINE Alu -1 308 1 237 274 0 39 chr13 53958981 53959083 -47914086 - L1MC4 LINE L1 -1328 6714 6617 226 262 93 56 chr13 53958987 53959094 -47914075 + L1MC4 LINE L1 6613 6723 -1319 * 478 307 36 53 chr13 53959095 53959320 -47913849 - MIR SINE MIR -41 221 1 304 329 81 18 chr13 53959362 53959584 -47913585 + L1MC/D LINE L1 5393 5628 -2180 315 71 0 0 chr13 53959746 53959788 -47913381 + (TA)n Simple_repeat Simple_repeat 1 42 0 2137 54 51 27 chr13 53959925 53960220 -47912949 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 53961306 53961328 -47911841 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr13 53961465 53961501 -47911668 + AT_rich Low_complexity Low_complexity 1 36 0 181 250 0 23 chr13 53963128 53963172 -47909997 + L2 LINE L2 3267 3309 -4 28 29 0 0 chr13 53964328 53964363 -47908806 + AT_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr13 53964539 53964603 -47908566 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr13 53964976 53964998 -47908171 + AT_rich Low_complexity Low_complexity 1 22 0 237 241 17 0 chr13 53965873 53965931 -47907238 - MER5A DNA MER1_type -84 105 47 1155 248 50 16 chr13 53965960 53966283 -47906886 - MER58B DNA MER1_type -5 336 3 2224 217 12 15 chr13 53966393 53966958 -47906211 + MER67C LTR ERV1 1 619 -91 2308 104 0 3 chr13 53968680 53968989 -47904180 + AluY SINE Alu 1 308 -3 644 177 0 8 chr13 53970240 53970364 -47902805 - MER4E LTR ERV1 0 766 644 26 64 0 0 chr13 53970971 53971018 -47902151 + AT_rich Low_complexity Low_complexity 1 47 0 196 220 80 0 chr13 53971038 53971088 -47902081 - L2 LINE L2 -1 3271 3218 30 27 0 0 chr13 53972834 53972871 -47900298 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 53972889 53972910 -47900259 + AT_rich Low_complexity Low_complexity 1 21 0 1231 216 18 66 chr13 53973523 53973916 -47899253 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr13 53973963 53973984 -47899185 + AT_rich Low_complexity Low_complexity 1 21 0 2358 76 0 13 chr13 53974196 53974498 -47898671 + AluY SINE Alu 1 298 -13 34 55 0 0 chr13 53976104 53976159 -47897010 + AT_rich Low_complexity Low_complexity 1 55 0 23 54 0 0 chr13 53976253 53976290 -47896879 + AT_rich Low_complexity Low_complexity 1 37 0 776 168 0 7 chr13 53976687 53976836 -47896333 - L1 LINE L1 -2159 3987 3840 * 2832 121 28 99 chr13 53976835 53977236 -47895933 + L1PB1 LINE L1 5110 5435 -716 2754 19 0 6 chr13 53977236 53977552 -47895617 + AluYb8 SINE Alu 1 314 -4 2832 121 28 99 chr13 53977552 53977886 -47895283 + L1PB1 LINE L1 5435 5791 -360 416 154 39 26 chr13 53977886 53978042 -47895127 + (TA)n Simple_repeat Simple_repeat 1 158 0 2404 116 3 14 chr13 53978054 53978425 -47894744 + L1PB1 LINE L1 5782 6148 -3 3192 194 102 19 chr13 53978437 53979246 -47893923 + L1MB2 LINE L1 5293 6169 -2 21 0 0 0 chr13 53979727 53979748 -47893421 + AT_rich Low_complexity Low_complexity 1 21 0 989 173 5 74 chr13 53982268 53982470 -47890699 + Tigger3(Golem) DNA MER2_type 1 188 -2841 3540 160 17 14 chr13 53982473 53983123 -47890046 + Tigger3(Golem) DNA MER2_type 2377 3028 -1 309 299 118 24 chr13 53983362 53983489 -47889680 + L2 LINE L2 2376 2514 -800 256 329 112 0 chr13 53983610 53983753 -47889416 + L2 LINE L2 2903 3061 -211 199 0 0 61 chr13 53987442 53987475 -47885694 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr13 53987764 53987793 -47885376 + AT_rich Low_complexity Low_complexity 1 29 0 246 279 67 78 chr13 53988499 53989052 -47884117 + L1MC5 LINE L1 7382 7928 -33 26 74 0 0 chr13 53989436 53989490 -47883679 + AT_rich Low_complexity Low_complexity 1 54 0 219 36 0 0 chr13 53989959 53989987 -47883182 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 235 193 35 0 chr13 53990454 53990511 -47882658 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 899 285 101 42 chr13 53990816 53991837 -47881332 - L1ME LINE L1 -448 5714 4627 21 71 0 0 chr13 53991892 53991934 -47881235 + AT_rich Low_complexity Low_complexity 1 42 0 1085 179 27 146 chr13 53991961 53992291 -47880878 - AluJb SINE Alu -11 291 1 422 296 126 23 chr13 53992291 53992775 -47880394 - L1ME LINE L1 -1819 4327 3794 250 304 0 0 chr13 53992966 53993045 -47880124 + L1M4 LINE L1 2696 2774 -3372 207 0 0 0 chr13 53993731 53993754 -47879415 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1598 191 3 3 chr13 53993767 53994055 -47879114 - AluJb SINE Alu -24 288 1 1526 160 98 28 chr13 53994356 53994674 -47878495 + THE1C LTR MaLR 1 340 -35 636 79 0 0 chr13 53994675 53994764 -47878405 - AluY SINE Alu -5 306 218 231 121 0 0 chr13 53994768 53994801 -47878368 + THE1C LTR MaLR 396 428 0 237 250 28 0 chr13 53995312 53995384 -47877785 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 232 328 16 0 chr13 53995449 53995513 -47877656 - L2 LINE L2 -8 3305 3241 225 274 53 74 chr13 53995920 53996015 -47877154 + L2 LINE L2 3221 3313 0 497 344 121 21 chr13 53997353 53997684 -47875485 + MLT1I LTR MaLR 12 375 -34 243 0 0 0 chr13 53998345 53998372 -47874797 + (TG)n Simple_repeat Simple_repeat 1 27 0 240 35 0 0 chr13 53998371 53998400 -47874769 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 454 292 154 51 chr13 53999536 54000101 -47873068 - L2 LINE L2 0 3313 2692 1864 127 13 34 chr13 54000105 54000653 -47872516 + MER4A LTR ERV1 1 664 0 25 31 0 0 chr13 54001481 54001513 -47871656 + AT_rich Low_complexity Low_complexity 1 32 0 349 94 0 0 chr13 54001541 54001594 -47871575 + L1 LINE L1 3412 3464 -2682 4857 171 12 28 chr13 54001665 54002635 -47870534 + L1MA6 LINE L1 5345 6299 -1 1727 175 55 62 chr13 54002632 54002679 -47870490 + L1 LINE L1 3510 3556 -2590 * 3416 120 53 33 chr13 54002679 54003002 -47870167 + MER4B LTR ERV1 1 343 -267 2137 109 20 0 chr13 54003002 54003296 -47869873 - AluSg SINE Alu -10 300 1 3416 120 53 33 chr13 54003296 54003570 -47869599 + MER4B LTR ERV1 343 610 0 1727 175 55 62 chr13 54003570 54004036 -47869133 + L1 LINE L1 3556 4019 -2127 1111 297 16 26 chr13 54004084 54004461 -47868708 - LTR40a LTR ERVL -145 374 2 830 313 22 8 chr13 54004486 54004754 -47868415 - MLT1J LTR MaLR -226 285 14 196 271 85 0 chr13 54005123 54005182 -47867987 + L2 LINE L2 2997 3060 -212 234 262 97 19 chr13 54005964 54006067 -47867102 + L2 LINE L2 3160 3270 -43 487 184 28 9 chr13 54007339 54007448 -47865721 - MER69A DNA AcHobo -35 142 32 204 333 30 15 chr13 54007448 54007514 -47865655 - L2 LINE L2 -46 3226 3160 473 99 49 25 chr13 54007566 54007678 -47865491 - AluSg/x SINE Alu 0 312 199 1972 125 0 18 chr13 54007699 54007979 -47865190 + AluSx SINE Alu 18 292 -20 189 0 0 0 chr13 54007996 54008017 -47865152 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 279 0 0 0 chr13 54009429 54009460 -47863709 + (TG)n Simple_repeat Simple_repeat 2 32 0 1489 194 10 30 chr13 54009740 54010039 -47863130 - AluJo SINE Alu -17 295 3 22 0 0 0 chr13 54011083 54011105 -47862064 + AT_rich Low_complexity Low_complexity 1 22 0 1158 276 140 23 chr13 54011630 54012332 -47860837 + LTR50 LTR ERVL 12 795 0 847 279 67 56 chr13 54012644 54013164 -47860005 + L1ME LINE L1 5260 5785 -385 2588 146 9 2 chr13 54013169 54013594 -47859575 + MSTA LTR MaLR 1 428 0 385 325 138 36 chr13 54014186 54014848 -47858321 + L1M4 LINE L1 3765 4493 -1653 4970 111 7 3 chr13 54015166 54015841 -47857328 + L1PB1 LINE L1 5109 5789 -362 186 43 0 0 chr13 54015841 54015864 -47857305 + (TA)n Simple_repeat Simple_repeat 2 24 0 4970 111 7 3 chr13 54015864 54016051 -47857118 + L1PB1 LINE L1 5789 5974 -177 6734 230 17 45 chr13 54016062 54018810 -47854359 + L1P3 LINE L1 10 2702 -3759 264 306 70 70 chr13 54018814 54018964 -47854205 - L2 LINE L2 -577 2737 2585 841 196 18 70 chr13 54018964 54019193 -47853976 + MER20 DNA MER1_type 3 219 0 264 306 70 70 chr13 54019193 54019228 -47853941 - L2 LINE L2 -728 2586 2552 530 121 38 3 chr13 54019737 54019834 -47853335 + L1MB1 LINE L1 6075 6167 -1 632 221 33 66 chr13 54020547 54020760 -47852409 - LTR40b LTR ERVL -4 458 253 1376 216 63 54 chr13 54020761 54021303 -47851866 + MER67C LTR ERV1 1 510 -4 854 263 35 4 chr13 54021362 54021590 -47851579 - LTR40a LTR ERVL -282 237 3 439 316 29 7 chr13 54021626 54021762 -47851407 - L2 LINE L2 0 3313 3175 748 359 60 52 chr13 54022315 54022664 -47850505 - L2 LINE L2 -494 2820 2475 2143 129 0 16 chr13 54022664 54022981 -47850188 + AluSx SINE Alu 1 312 0 748 359 60 52 chr13 54022981 54023466 -47849703 - L2 LINE L2 -839 2475 1979 180 148 0 0 chr13 54023534 54023561 -47849608 - L3 LINE CR1 -1240 337 311 32 57 0 0 chr13 54023643 54023696 -47849473 + AT_rich Low_complexity Low_complexity 1 53 0 31 26 0 0 chr13 54023888 54023926 -47849243 + AT_rich Low_complexity Low_complexity 1 38 0 1035 247 61 88 chr13 54023989 54024652 -47848517 - L1ME LINE L1 -358 6040 5397 309 262 99 0 chr13 54024693 54024834 -47848335 + L1M4 LINE L1 4889 5043 -1103 22 56 0 0 chr13 54024928 54024964 -47848205 + AT_rich Low_complexity Low_complexity 1 36 0 500 307 69 13 chr13 54025031 54025480 -47847689 - L1ME LINE L1 -1538 4844 4371 332 271 149 16 chr13 54025663 54025851 -47847318 - L1ME LINE L1 -3955 2429 2217 388 351 20 0 chr13 54026536 54026687 -47846482 + MIR SINE MIR 92 245 -17 392 297 66 54 chr13 54026745 54027004 -47846165 + L1ME LINE L1 5336 5597 -565 27 0 0 0 chr13 54027035 54027062 -47846107 + AT_rich Low_complexity Low_complexity 1 27 0 194 167 0 83 chr13 54027219 54027267 -47845902 - L2 LINE L2 -105 3208 3165 461 285 140 40 chr13 54027369 54027408 -47845761 + MIR SINE MIR 41 75 -187 2447 96 8 8 chr13 54027408 54027763 -47845406 - THE1A LTR MaLR 0 355 1 461 285 140 40 chr13 54027763 54027923 -47845246 + MIR SINE MIR 75 260 -2 21 0 0 0 chr13 54028608 54028629 -47844540 + AT_rich Low_complexity Low_complexity 1 21 0 46 62 0 0 chr13 54029212 54029293 -47843876 + AT_rich Low_complexity Low_complexity 1 81 0 31 26 0 0 chr13 54029603 54029641 -47843528 + AT_rich Low_complexity Low_complexity 1 38 0 210 191 0 0 chr13 54029656 54029698 -47843471 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 571 254 59 12 chr13 54029997 54030166 -47843003 - MER5B DNA MER1_type -1 177 1 402 57 0 0 chr13 54030265 54030318 -47842851 + (TG)n Simple_repeat Simple_repeat 2 54 0 535 320 127 37 chr13 54030656 54031065 -47842104 - L2 LINE L2 -338 2976 2531 685 243 20 0 chr13 54031146 54031298 -47841871 + MIR SINE MIR 77 231 -31 27 73 0 0 chr13 54031552 54031607 -47841562 + AT_rich Low_complexity Low_complexity 1 55 0 963 296 72 7 chr13 54032049 54032353 -47840816 + LTR16B LTR ERVL 85 408 -56 1679 169 3 17 chr13 54033012 54033302 -47839867 - AluJb SINE Alu -26 286 1 227 240 120 67 chr13 54033701 54033776 -47839393 + L2 LINE L2 3142 3220 -52 2204 178 9 52 chr13 54034183 54034628 -47838541 + MSTB LTR MaLR 1 426 0 234 365 83 0 chr13 54035003 54035099 -47838070 + MIR SINE MIR 12 115 -147 3159 205 45 67 chr13 54036153 54036838 -47836331 - MER31-int LTR ERV1 -1587 4744 4117 2235 95 0 16 chr13 54036838 54037144 -47836025 + AluSq SINE Alu 9 309 -4 3159 205 45 67 chr13 54037144 54037542 -47835627 - MER31-int LTR ERV1 -2214 4117 3712 859 202 67 55 chr13 54037557 54038062 -47835107 - MER31-int LTR ERV1 -2866 2257 1753 535 143 0 0 chr13 54038341 54038418 -47834751 - MER31-int LTR ERV1 -2991 3340 3264 899 154 14 72 chr13 54038466 54038674 -47834495 - MER31-int LTR ERV1 -3055 3276 3081 278 171 118 0 chr13 54038687 54038763 -47834406 - MER31-int LTR ERV1 -3767 1169 1085 367 246 0 0 chr13 54038802 54038901 -47834268 - MER31-int LTR ERV1 -3694 1286 1096 496 254 45 97 chr13 54038924 54039212 -47833957 - MER34C LTR ERV1 -156 429 157 1268 166 13 99 chr13 54039466 54039508 -47833661 - MER31-int LTR ERV1 -6696 841 797 1918 137 3 0 chr13 54039508 54039815 -47833354 - AluSq SINE Alu 0 308 1 1268 166 13 99 chr13 54039815 54040085 -47833084 - MER31-int LTR ERV1 -6740 797 555 2086 187 18 5 chr13 54040252 54040642 -47832527 - MER57A LTR ERV1 0 403 9 244 163 82 0 chr13 54040642 54040691 -47832478 - MER57A LTR ERV1 -350 53 1 2740 171 29 25 chr13 54040708 54041257 -47831912 + MER57A-int LTR ERV1 5271 5821 -1716 6602 188 39 9 chr13 54041570 54042851 -47830318 + MER57A-int LTR ERV1 5825 7144 -393 800 199 270 13 chr13 54042851 54043158 -47830011 + LTR54B LTR ERV1 1 386 -112 430 206 0 21 chr13 54043166 54043263 -47829906 + MER57A-int LTR ERV1 7443 7537 0 1570 160 143 42 chr13 54043264 54043620 -47829549 + MER57A LTR ERV1 2 393 -10 333 247 45 0 chr13 54043821 54043910 -47829259 + MER5A DNA MER1_type 9 101 -88 2157 138 0 0 chr13 54044101 54044413 -47828756 - AluSx SINE Alu 0 312 1 225 207 67 52 chr13 54044419 54044554 -47828615 + Charlie7 DNA MER1_type 2473 2609 -3 359 298 33 40 chr13 54044728 54044879 -47828290 + MLT1J LTR MaLR 1 150 -361 222 37 0 0 chr13 54045632 54045659 -47827510 + (TA)n Simple_repeat Simple_repeat 1 27 0 812 156 0 0 chr13 54046578 54046700 -47826469 + FLAM_C SINE Alu 3 124 -19 893 267 132 73 chr13 54048568 54049559 -47823610 + MER52A LTR ERV1 1 1738 -17 671 195 0 23 chr13 54049663 54049791 -47823378 - FLAM_C SINE Alu -9 134 10 1194 117 18 6 chr13 54049923 54050094 -47823075 - AluSg/x SINE Alu -25 285 113 21 0 0 0 chr13 54050905 54050926 -47822243 + AT_rich Low_complexity Low_complexity 1 21 0 24 41 0 20 chr13 54051094 54051126 -47822043 + AT_rich Low_complexity Low_complexity 1 33 -15 1455 124 0 0 chr13 54051126 54051328 -47821841 - AluSg/x SINE Alu -25 287 86 24 41 0 20 chr13 54051328 54051344 -47821825 + AT_rich Low_complexity Low_complexity 33 48 0 22 56 0 0 chr13 54051408 54051444 -47821725 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 54052313 54052337 -47820832 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 54052711 54052747 -47820422 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr13 54052863 54052893 -47820276 + AT_rich Low_complexity Low_complexity 1 30 0 185 349 15 15 chr13 54052959 54053025 -47820144 + L2 LINE L2 3166 3231 -41 195 42 0 0 chr13 54053025 54053049 -47820120 + (TA)n Simple_repeat Simple_repeat 1 24 0 366 143 0 0 chr13 54053759 54053822 -47819347 + MER41A LTR ERV1 404 466 -88 21 0 0 0 chr13 54054597 54054618 -47818551 + AT_rich Low_complexity Low_complexity 1 21 0 539 205 0 0 chr13 54054855 54054967 -47818202 - AluY SINE Alu -15 296 185 2142 107 3 16 chr13 54055032 54055342 -47817827 + AluY SINE Alu 1 306 -5 189 107 0 0 chr13 54055488 54055516 -47817653 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 555 303 7 7 chr13 54055535 54055687 -47817482 + MIR3 SINE MIR 51 202 -6 25 31 0 0 chr13 54055846 54055878 -47817291 + AT_rich Low_complexity Low_complexity 1 32 0 2318 113 19 16 chr13 54056110 54056473 -47816696 + THE1B LTR MaLR 1 364 0 32 43 0 0 chr13 54056540 54056586 -47816583 + AT_rich Low_complexity Low_complexity 1 46 0 205 424 73 7 chr13 54056731 54056882 -47816287 + L2 LINE L2 2895 3055 -217 36 53 0 0 chr13 54057159 54057216 -47815953 + AT_rich Low_complexity Low_complexity 1 57 0 2140 132 0 0 chr13 54057954 54058257 -47814912 - AluY SINE Alu -6 305 3 450 214 22 22 chr13 54058508 54058686 -47814483 + CT-rich Low_complexity Low_complexity 1 178 0 1831 120 35 14 chr13 54058949 54059269 -47813900 - AluSq SINE Alu 0 326 1 647 99 10 0 chr13 54059847 54059948 -47813221 + (TA)n Simple_repeat Simple_repeat 2 103 0 246 62 0 0 chr13 54060435 54060467 -47812702 + (T)n Simple_repeat Simple_repeat 1 32 0 415 316 36 6 chr13 54060535 54060703 -47812466 - HAL1 LINE L1 -860 1647 1475 434 321 84 57 chr13 54060779 54061253 -47811916 - HAL1 LINE L1 -1045 1462 976 43286 42 3 8 chr13 54061341 54064044 -47809125 + L1PA4 LINE L1 5 2720 -3435 2720 16 0 10 chr13 54064044 54064353 -47808816 - AluYa5 SINE Alu -5 306 1 43286 42 3 8 chr13 54064353 54067828 -47805341 + L1PA4 LINE L1 2720 6147 -8 513 104 0 0 chr13 54068179 54068256 -47804913 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 27 29 0 0 chr13 54068396 54068430 -47804739 + AT_rich Low_complexity Low_complexity 1 34 0 43 47 0 0 chr13 54068479 54068543 -47804626 + AT_rich Low_complexity Low_complexity 1 64 0 192 313 16 93 chr13 54068572 54068754 -47804415 + MIR SINE MIR 29 196 -66 348 254 227 16 chr13 54069344 54069529 -47803640 + L1MB7 LINE L1 6 229 -6313 981 253 68 34 chr13 54069545 54069929 -47803240 + L1MB7 LINE L1 4073 4469 -2175 903 102 0 0 chr13 54069929 54070047 -47803122 + AluSq/x SINE Alu 1 118 -194 3125 220 77 22 chr13 54070235 54071142 -47802027 + L1MB7 LINE L1 4731 5587 -1095 1081 82 0 7 chr13 54071142 54071288 -47801881 + L1PA10 LINE L1 6014 6158 -10 3125 220 77 22 chr13 54071288 54072208 -47800961 + L1MB7 LINE L1 5587 6663 -19 294 296 24 41 chr13 54073595 54073764 -47799405 + GA-rich Low_complexity Low_complexity 2 167 0 21 36 0 0 chr13 54074034 54074062 -47799107 + AT_rich Low_complexity Low_complexity 1 28 0 216 211 0 0 chr13 54074379 54074417 -47798752 + polypyrimidine Low_complexity Low_complexity 1 38 0 1877 178 85 0 chr13 54075420 54075818 -47797351 + MSTB1 LTR MaLR 1 432 0 2306 61 0 42 chr13 54076697 54077008 -47796161 + AluY SINE Alu 1 298 -13 30 0 0 0 chr13 54077768 54077798 -47795371 + AT_rich Low_complexity Low_complexity 1 30 0 1710 134 6 66 chr13 54077949 54078269 -47794900 + AluSx SINE Alu 1 301 -11 1297 183 141 112 chr13 54078746 54078945 -47794224 - MLT1D LTR MaLR 0 505 313 1850 144 52 21 chr13 54078945 54079271 -47793898 + MER1B DNA MER1_type 1 336 -1 1297 183 141 112 chr13 54079271 54079562 -47793607 - MLT1D LTR MaLR -192 313 1 21 36 0 0 chr13 54079763 54079791 -47793378 + AT_rich Low_complexity Low_complexity 1 28 0 407 224 16 24 chr13 54080182 54080307 -47792862 + L1PB4 LINE L1 6027 6150 -6 418 183 11 32 chr13 54080402 54080495 -47792674 - Charlie8 DNA MER1_type -2224 193 103 23 68 0 0 chr13 54080702 54080746 -47792423 + AT_rich Low_complexity Low_complexity 1 44 0 3885 68 31 2 chr13 54081032 54081545 -47791624 - L1PA8 LINE L1 -6 6166 5639 267 31 0 0 chr13 54081545 54081577 -47791592 + Harlequin LTR ERV1 6857 6888 -8 1863 185 75 32 chr13 54081579 54082049 -47791120 + LTR2B LTR ERV1 1 490 0 618 150 0 0 chr13 54082102 54082202 -47790967 + HY3 scRNA scRNA 1 100 -1 22 56 0 0 chr13 54082274 54082310 -47790859 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 54082335 54082364 -47790805 + AT_rich Low_complexity Low_complexity 1 29 0 402 342 76 0 chr13 54082378 54082562 -47790607 - MIR SINE MIR -44 218 21 1822 240 89 50 chr13 54082651 54083225 -47789944 + MLT1E2 LTR MaLR 18 613 -13 306 304 109 71 chr13 54084641 54085390 -47787779 + L1M4 LINE L1 4224 5001 -1145 992 304 36 32 chr13 54085535 54085973 -47787196 + L1M2 LINE L1 11 450 -6399 929 244 34 55 chr13 54086784 54087075 -47786094 + L1PA5 LINE L1 449 733 -6116 9766 212 56 17 chr13 54087550 54092615 -47780554 + L1PA5 LINE L1 1427 6823 -34 321 89 0 0 chr13 54092622 54092667 -47780502 + (CA)n Simple_repeat Simple_repeat 2 46 0 5129 178 24 15 chr13 54092688 54093893 -47779276 + L1PA16 LINE L1 4265 5457 -709 2260 86 0 0 chr13 54093893 54094172 -47778997 + AluSc SINE Alu 1 279 -30 212 0 36 0 chr13 54094177 54094205 -47778964 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 5129 178 24 15 chr13 54094205 54094872 -47778297 + L1PA16 LINE L1 5460 6146 -20 27 0 0 0 chr13 54095260 54095287 -47777882 + AT_rich Low_complexity Low_complexity 1 27 0 2002 109 30 13 chr13 54095417 54095719 -47777450 - AluSx SINE Alu -5 307 1 1159 153 0 0 chr13 54095958 54096148 -47777021 + AluSg/x SINE Alu 122 311 -1 23 0 0 0 chr13 54096265 54096288 -47776881 + AT_rich Low_complexity Low_complexity 1 23 0 2357 87 0 0 chr13 54097381 54097680 -47775489 - AluSc SINE Alu -10 299 1 24 0 0 0 chr13 54098972 54098996 -47774173 + AT_rich Low_complexity Low_complexity 1 24 0 1134 211 42 4 chr13 54099354 54099591 -47773578 + Tigger6 DNA MER2_type 1 246 -1351 283 132 44 29 chr13 54099837 54099905 -47773264 - MER4D LTR ERV1 -7 896 828 616 165 18 9 chr13 54099906 54100015 -47773154 - MER61E LTR ERV1 -117 452 343 264 287 0 89 chr13 54100094 54100195 -47772974 - MER61E LTR ERV1 -379 190 99 * 460 230 35 9 chr13 54100192 54100305 -47772864 - LTR25 LTR ERV1 -431 363 248 3083 153 45 72 chr13 54100567 54100993 -47772176 - MER39B LTR ERV1 0 653 250 946 186 124 117 chr13 54100993 54101284 -47771885 - AluJo SINE Alu -6 296 4 3083 153 45 72 chr13 54101284 54101519 -47771650 - MER39B LTR ERV1 -403 250 10 7138 190 2 1 chr13 54102236 54103664 -47769505 + L1 LINE L1 3037 4466 -1680 196 319 88 66 chr13 54103963 54103998 -47769171 + L2 LINE L2 2552 2585 -729 841 196 18 70 chr13 54103998 54104227 -47768942 - MER20 DNA MER1_type 0 219 3 196 319 88 66 chr13 54104227 54104373 -47768796 + L2 LINE L2 2585 2737 -577 6546 233 19 47 chr13 54104377 54107124 -47766045 - L1P3 LINE L1 -3759 2702 10 4970 111 7 3 chr13 54107135 54107322 -47765847 - L1PB1 LINE L1 -177 5974 5789 186 43 0 0 chr13 54107322 54107345 -47765824 + (TA)n Simple_repeat Simple_repeat 1 23 0 4970 111 7 3 chr13 54107345 54108020 -47765149 - L1PB1 LINE L1 -362 5789 5109 385 325 138 36 chr13 54108338 54109000 -47764169 - L1M4 LINE L1 -1653 4493 3765 2541 146 12 2 chr13 54109592 54110016 -47763153 - MSTA LTR MaLR 0 428 1 847 279 67 56 chr13 54110021 54110541 -47762628 - L1ME LINE L1 -385 5785 5260 1158 276 140 23 chr13 54110853 54111555 -47761614 - LTR50 LTR ERVL 0 795 12 22 0 0 0 chr13 54112080 54112102 -47761067 + AT_rich Low_complexity Low_complexity 1 22 0 1489 194 10 30 chr13 54113146 54113445 -47759724 + AluJo SINE Alu 3 295 -17 279 0 0 0 chr13 54113725 54113756 -47759413 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr13 54115168 54115189 -47757980 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2214 107 0 0 chr13 54115206 54115496 -47757673 - AluSg SINE Alu -20 290 1 24 0 0 0 chr13 54116789 54116813 -47756356 + AT_rich Low_complexity Low_complexity 1 24 0 1721 203 93 20 chr13 54117171 54117579 -47755590 + Tigger6 DNA MER2_type 1 438 -645 569 260 138 23 chr13 54117905 54118193 -47754976 - MER58 DNA MER1_type -15 2405 1 2253 109 0 0 chr13 54118291 54118593 -47754576 - AluSx SINE Alu -10 302 1 442 281 73 35 chr13 54118673 54118896 -47754273 + L2 LINE L2 3028 3264 -49 2213 103 3 3 chr13 54118896 54119198 -47753971 + AluSg SINE Alu 1 302 -8 442 281 73 35 chr13 54119198 54119234 -47753935 + L2 LINE L2 3264 3297 -16 23 33 0 0 chr13 54119322 54119352 -47753817 + AT_rich Low_complexity Low_complexity 1 30 0 182 400 0 10 chr13 54120215 54120315 -47752854 - MIR SINE MIR -80 182 84 39 50 0 0 chr13 54120422 54120482 -47752687 + AT_rich Low_complexity Low_complexity 1 60 0 245 106 0 43 chr13 54120951 54120998 -47752171 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 1417 221 78 34 chr13 54121429 54121903 -47751266 + L1ME2 LINE L1 5670 6164 0 28 48 0 0 chr13 54122492 54122534 -47750635 + AT_rich Low_complexity Low_complexity 1 42 0 2019 151 28 41 chr13 54123017 54123290 -47749879 + L1MA8 LINE L1 5862 6129 -162 1717 135 26 4 chr13 54123290 54123580 -47749589 + AluSq SINE Alu 11 306 0 2019 151 28 41 chr13 54123580 54123741 -47749428 + L1MA8 LINE L1 6129 6291 0 22 35 0 0 chr13 54123841 54123870 -47749299 + AT_rich Low_complexity Low_complexity 1 29 0 36 40 0 0 chr13 54124134 54124184 -47748985 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr13 54124342 54124379 -47748790 + AT_rich Low_complexity Low_complexity 1 37 0 2187 104 0 3 chr13 54124432 54124731 -47748438 + AluSc SINE Alu 5 302 -7 9735 125 120 8 chr13 54124991 54126668 -47746501 + L1PB1 LINE L1 2 1865 -4998 * 13676 210 16 8 chr13 54126636 54129625 -47743544 + L1PB1 LINE L1 2412 5432 -1435 234 0 0 0 chr13 54129625 54129651 -47743518 + (CAA)n Simple_repeat Simple_repeat 2 27 0 13676 210 16 8 chr13 54129651 54130736 -47742433 + L1PB1 LINE L1 5432 6507 -360 363 228 22 7 chr13 54130736 54130857 -47742312 + (CATA)n Simple_repeat Simple_repeat 3 128 -12 2415 109 3 14 chr13 54130857 54131223 -47741946 + L1PB1 LINE L1 6503 6864 -3 363 228 22 7 chr13 54131223 54131237 -47741932 + (CATA)n Simple_repeat Simple_repeat 128 140 0 21 36 0 0 chr13 54132822 54132850 -47740319 + AT_rich Low_complexity Low_complexity 1 28 0 347 303 89 19 chr13 54134069 54134383 -47738786 + L1ME4a LINE L1 5513 5848 -273 225 224 82 0 chr13 54134539 54134624 -47738545 - L1MC4 LINE L1 -1337 6705 6614 232 133 0 0 chr13 54134636 54134681 -47738488 + LTR66 LTR ERVL 394 438 -172 2121 131 0 0 chr13 54137211 54137502 -47735667 - AluSx SINE Alu -21 291 1 396 59 0 0 chr13 54137665 54137716 -47735453 + (TATG)n Simple_repeat Simple_repeat 2 52 0 22 35 0 0 chr13 54137751 54137780 -47735389 + AT_rich Low_complexity Low_complexity 1 29 0 5210 175 30 15 chr13 54138163 54140144 -47733025 + L1MA4A LINE L1 4109 6121 -182 504 172 0 0 chr13 54140148 54140241 -47732928 + L1MA4A LINE L1 6188 6280 -23 897 45 0 0 chr13 54140790 54140902 -47732267 - L1PA5 LINE L1 -7 6147 6036 29 78 0 0 chr13 54141020 54141084 -47732085 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr13 54141117 54141147 -47732022 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr13 54141180 54141216 -47731953 + AT_rich Low_complexity Low_complexity 1 36 0 205 49 0 49 chr13 54141224 54141265 -47731904 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 518 220 17 0 chr13 54141496 54141614 -47731555 - MLT1A2 LTR MaLR -254 120 1 308 278 61 56 chr13 54141641 54141740 -47731429 + MER110-int LTR ERV1 3274 3371 -1276 225 0 0 0 chr13 54141740 54141765 -47731404 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 308 278 61 56 chr13 54141765 54141863 -47731306 + MER110-int LTR ERV1 3371 3472 -1175 1167 285 39 13 chr13 54141863 54142246 -47730923 + MER110 LTR ERV1 46 438 -53 23 68 0 0 chr13 54143585 54143629 -47729540 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr13 54145513 54145547 -47727622 + AT_rich Low_complexity Low_complexity 1 34 0 198 91 0 0 chr13 54146053 54146086 -47727083 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr13 54146805 54146826 -47726343 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 54148167 54148196 -47724973 + AT_rich Low_complexity Low_complexity 1 29 0 2685 106 0 3 chr13 54150118 54150494 -47722675 + THE1C LTR MaLR 1 375 0 2077 165 29 2 chr13 54151109 54151506 -47721663 - MSTB1 LTR MaLR -1 431 1 792 94 0 0 chr13 54152261 54152389 -47720780 + (TAGA)n Simple_repeat Simple_repeat 1 128 0 1944 138 38 30 chr13 54152416 54152786 -47720383 + THE1C LTR MaLR 1 373 -2 244 123 110 0 chr13 54152817 54152972 -47720197 + (TA)n Simple_repeat Simple_repeat 1 172 0 2031 247 15 15 chr13 54152990 54153509 -47719660 + LTR40a LTR ERVL 1 519 0 345 337 116 36 chr13 54154179 54154482 -47718687 + L2 LINE L2 2946 3272 0 21 36 0 0 chr13 54154704 54154732 -47718437 + AT_rich Low_complexity Low_complexity 1 28 0 249 64 3 0 chr13 54154785 54154826 -47718343 + L1PA6 LINE L1 6108 6149 -5 331 337 125 0 chr13 54155997 54156181 -47716988 + L2 LINE L2 2448 2654 -660 515 316 33 7 chr13 54156246 54156398 -47716771 + LTR33 LTR ERVL 55 210 -311 22 0 0 0 chr13 54157590 54157612 -47715557 + AT_rich Low_complexity Low_complexity 1 22 0 229 244 0 0 chr13 54158509 54158554 -47714615 + (TA)n Simple_repeat Simple_repeat 2 46 0 1985 81 13 64 chr13 54158640 54158997 -47714172 + AluSp SINE Alu 1 342 0 1303 197 94 43 chr13 54159559 54159930 -47713239 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 54160819 54160841 -47712328 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr13 54161248 54161295 -47711874 + AT_rich Low_complexity Low_complexity 1 47 0 191 167 0 21 chr13 54161343 54161391 -47711778 + (TA)n Simple_repeat Simple_repeat 1 47 0 1370 197 40 13 chr13 54161910 54162209 -47710960 - AluJo SINE Alu -5 307 1 26 64 0 0 chr13 54164562 54164609 -47708560 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr13 54164666 54164689 -47708480 + AT_rich Low_complexity Low_complexity 1 23 0 1788 45 0 0 chr13 54164764 54164988 -47708181 + L1PA4 LINE L1 5932 6155 0 22 88 0 0 chr13 54164989 54165046 -47708123 + AT_rich Low_complexity Low_complexity 1 57 0 21 89 0 0 chr13 54165446 54165502 -47707667 + AT_rich Low_complexity Low_complexity 1 56 0 21 82 0 0 chr13 54166268 54166317 -47706852 + AT_rich Low_complexity Low_complexity 1 49 0 1960 181 59 2 chr13 54167036 54167445 -47705724 - MSTB1 LTR MaLR 0 432 1 4600 226 45 30 chr13 54167445 54168993 -47704176 - MSTB1-int LTR MaLR 0 1580 1 1406 170 0 8 chr13 54168993 54169228 -47703941 - MSTB1 LTR MaLR 0 432 200 1187 150 40 0 chr13 54169742 54169942 -47703227 - MSTB1 LTR MaLR -224 208 1 194 411 28 9 chr13 54170076 54170183 -47702986 - MIR3 SINE MIR -53 155 47 246 365 47 12 chr13 54170193 54170363 -47702806 + L2 LINE L2 1446 1621 -1693 25 0 0 0 chr13 54170389 54170414 -47702755 + AT_rich Low_complexity Low_complexity 1 25 0 1053 38 0 8 chr13 54170614 54170745 -47702424 + L1PA7 LINE L1 6022 6151 -3 22 0 0 0 chr13 54171106 54171128 -47702041 + AT_rich Low_complexity Low_complexity 1 22 0 480 290 30 6 chr13 54171252 54171421 -47701748 + L2 LINE L2 2144 2316 -998 315 292 146 22 chr13 54171726 54171863 -47701306 - L2 LINE L2 -398 2916 2763 265 345 113 50 chr13 54172128 54172508 -47700661 - L2 LINE L2 -1429 1885 1482 2094 113 7 0 chr13 54173728 54174020 -47699149 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr13 54174434 54174455 -47698714 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 54175215 54175238 -47697931 + AT_rich Low_complexity Low_complexity 1 23 0 239 270 0 0 chr13 54175615 54175678 -47697491 + L1MC4 LINE L1 6641 6703 -1339 297 51 0 0 chr13 54175684 54175723 -47697446 + (GA)n Simple_repeat Simple_repeat 2 40 0 3455 46 101 0 chr13 54175727 54176183 -47696986 + L1PA5 LINE L1 5646 6147 -7 287 284 34 0 chr13 54176805 54176893 -47696276 + MIR SINE MIR 106 196 -66 256 231 130 11 chr13 54177109 54177258 -47695911 + MIR SINE MIR 62 234 -28 25 31 0 0 chr13 54177483 54177515 -47695654 + AT_rich Low_complexity Low_complexity 1 32 0 204 304 141 49 chr13 54178556 54178740 -47694429 + MIR3 SINE MIR 2 202 -6 273 303 79 79 chr13 54178920 54179085 -47694084 - MIR SINE MIR -49 213 49 187 357 31 23 chr13 54180040 54180169 -47693000 + L2 LINE L2 2592 2721 -593 206 190 0 69 chr13 54180169 54180227 -47692942 + T-rich Low_complexity Low_complexity 3 56 0 283 330 0 0 chr13 54180577 54180665 -47692504 + L2 LINE L2 3185 3272 0 180 0 0 0 chr13 54181399 54181419 -47691750 + (A)n Simple_repeat Simple_repeat 1 20 0 2754 22 0 0 chr13 54181896 54182212 -47690957 - AluYb8 SINE Alu -2 316 1 22 0 0 0 chr13 54183273 54183295 -47689874 + AT_rich Low_complexity Low_complexity 1 22 0 35 78 0 0 chr13 54183449 54183526 -47689643 + AT_rich Low_complexity Low_complexity 1 77 0 3003 208 41 0 chr13 54184330 54184937 -47688232 - MLT1A1-int LTR MaLR -1103 632 1 1552 219 29 9 chr13 54184937 54185279 -47687890 - MLT1A1 LTR MaLR 0 365 17 1158 214 38 115 chr13 54185318 54185761 -47687408 + MLT1C LTR MaLR 59 467 0 25 0 0 0 chr13 54185777 54185802 -47687367 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 54186016 54186038 -47687131 + AT_rich Low_complexity Low_complexity 1 22 0 183 419 77 8 chr13 54186323 54186440 -47686729 - MIR SINE MIR -64 144 20 391 302 110 41 chr13 54186607 54186852 -47686317 + MIR SINE MIR 1 262 0 337 299 44 44 chr13 54186945 54187082 -47686087 - L2 LINE L2 0 3313 3177 370 340 142 19 chr13 54187330 54187542 -47685627 - L3 LINE CR1 -9 1568 1331 267 31 0 0 chr13 54187607 54187639 -47685530 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr13 54188283 54188319 -47684850 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr13 54188855 54188890 -47684279 + AT_rich Low_complexity Low_complexity 1 35 0 2672 17 0 0 chr13 54190199 54190495 -47682674 - AluYb8 SINE Alu -11 307 12 1449 249 14 53 chr13 54192468 54192670 -47680499 - MLT1E2 LTR MaLR 0 626 418 1755 174 16 10 chr13 54192670 54192980 -47680189 - AluSx SINE Alu 0 312 1 1449 249 14 53 chr13 54192980 54193214 -47679955 - MLT1E2 LTR MaLR -208 418 207 305 305 38 0 chr13 54193296 54193401 -47679768 - MLT1E2 LTR MaLR -452 172 64 246 275 43 0 chr13 54193341 54193410 -47679759 - MLT2D LTR ERVL -308 106 35 * 2208 90 3 13 chr13 54193643 54193942 -47679227 - AluSg SINE Alu -14 296 1 523 345 55 29 chr13 54196975 54197595 -47675574 + HERVL LTR ERVL 4241 4960 -804 2257 108 0 6 chr13 54198757 54199072 -47674097 - AluSp SINE Alu 0 313 1 3037 62 3 0 chr13 54199499 54199888 -47673281 + L1PA4 LINE L1 5763 6152 -3 2574 185 22 35 chr13 54200053 54200600 -47672569 + MER101B LTR ERV1 31 570 0 2552 62 0 0 chr13 54200603 54200912 -47672257 - AluSc SINE Alu 0 309 1 23 54 0 0 chr13 54201004 54201041 -47672128 + AT_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr13 54201104 54201147 -47672022 + AT_rich Low_complexity Low_complexity 1 43 0 426 296 48 0 chr13 54201622 54201747 -47671422 - MIR SINE MIR -131 131 1 256 263 121 0 chr13 54202625 54202724 -47670445 - MIR SINE MIR -46 216 106 433 217 129 110 chr13 54204259 54204531 -47668638 - MER20B DNA MER1_type -321 462 186 31 88 0 0 chr13 54205879 54205959 -47667210 + AT_rich Low_complexity Low_complexity 1 80 0 206 132 19 38 chr13 54206022 54206075 -47667094 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr13 54206504 54206525 -47666644 + AT_rich Low_complexity Low_complexity 1 21 0 201 74 0 0 chr13 54206819 54206846 -47666323 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 40 37 0 0 chr13 54207194 54207248 -47665921 + AT_rich Low_complexity Low_complexity 1 54 0 217 247 71 59 chr13 54207456 54207541 -47665628 - L2 LINE L2 -10 3303 3218 1032 211 111 17 chr13 54207702 54208062 -47665107 - LTR37A LTR ERV1 -14 412 19 191 125 25 0 chr13 54208076 54208116 -47665053 + CT-rich Low_complexity Low_complexity 2 42 0 24 0 0 0 chr13 54209522 54209546 -47663623 + AT_rich Low_complexity Low_complexity 1 24 0 3354 91 2 2 chr13 54210776 54211228 -47661941 + MLT2A2 LTR ERVL 1 452 -1 313 280 116 26 chr13 54211811 54212043 -47661126 + L1MC4a LINE L1 5307 5559 -2249 7547 28 5 0 chr13 54212043 54213726 -47659443 + L1PA4 LINE L1 4469 6155 0 301 292 58 8 chr13 54213871 54213991 -47659178 + L1MC4a LINE L1 5847 5972 -1836 272 229 29 0 chr13 54214002 54214072 -47659097 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 27 49 0 0 chr13 54214193 54214234 -47658935 + AT_rich Low_complexity Low_complexity 1 41 0 679 271 61 0 chr13 54214406 54214587 -47658582 + L1MC4a LINE L1 6642 6833 -975 41 48 0 0 chr13 54215178 54215240 -47657929 + AT_rich Low_complexity Low_complexity 1 62 0 1383 186 3 65 chr13 54218896 54219218 -47653951 - AluJo SINE Alu 0 302 1 7155 184 184 3 chr13 54220667 54222153 -47651016 + MER52A LTR ERV1 1 1755 0 330 335 124 34 chr13 54222153 54222362 -47650807 + MIR SINE MIR 9 236 -26 501 234 117 76 chr13 54222442 54222887 -47650282 + LTR37B LTR ERV1 1 463 -5 3305 220 60 36 chr13 54223438 54223638 -47649531 + L1MB8 LINE L1 4509 4703 -1475 2438 82 0 0 chr13 54223638 54223943 -47649226 + AluY SINE Alu 1 305 -6 3305 220 60 36 chr13 54223943 54224923 -47648246 + L1MB8 LINE L1 4703 5734 -444 2863 160 19 24 chr13 54224923 54225455 -47647714 + LTR26B LTR ERV1 3 531 0 3305 220 60 36 chr13 54225455 54225911 -47647258 + L1MB8 LINE L1 5734 6178 0 23 0 0 0 chr13 54226333 54226356 -47646813 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 54226624 54226645 -47646524 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr13 54226861 54226886 -47646283 + AT_rich Low_complexity Low_complexity 1 25 0 267 287 35 23 chr13 54229056 54229143 -47644026 - L2 LINE L2 0 3313 3226 468 311 80 9 chr13 54230930 54231142 -47642027 + MIR SINE MIR 7 233 -29 230 250 0 0 chr13 54231344 54231396 -47641773 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 246 395 63 0 chr13 54231546 54231784 -47641385 + L2 LINE L2 2720 2972 -342 348 83 0 0 chr13 54231930 54231978 -47641191 + (TA)n Simple_repeat Simple_repeat 2 49 0 199 316 13 38 chr13 54232104 54232183 -47640986 + L2 LINE L2 3169 3245 -27 606 335 32 56 chr13 54232351 54232778 -47640391 - L2 LINE L2 -98 3215 2797 2074 134 0 13 chr13 54233279 54233584 -47639585 + AluSx SINE Alu 1 301 -11 418 302 0 17 chr13 54233923 54234039 -47639130 - MLT2E LTR ERVL -464 164 51 566 314 102 40 chr13 54234318 54234690 -47638479 - L3 LINE CR1 -314 1263 869 23 33 0 0 chr13 54235471 54235501 -47637668 + AT_rich Low_complexity Low_complexity 1 30 0 205 222 19 0 chr13 54236011 54236065 -47637104 + (TAA)n Simple_repeat Simple_repeat 2 56 0 468 51 0 0 chr13 54236285 54236293 -47636876 + (TA)n Simple_repeat Simple_repeat 1 67 0 468 51 0 0 chr13 54236293 54236352 -47636817 + (TA)n Simple_repeat Simple_repeat 2 60 0 803 176 94 13 chr13 54236634 54236793 -47636376 + MER21B LTR ERV1 330 501 -362 250 247 13 13 chr13 54237570 54237647 -47635522 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 198 0 0 0 chr13 54237765 54237787 -47635382 + (A)n Simple_repeat Simple_repeat 1 22 0 3795 221 30 17 chr13 54238049 54239038 -47634131 + L1 LINE L1 2601 3602 -2544 21 57 0 0 chr13 54239132 54239167 -47634002 + AT_rich Low_complexity Low_complexity 1 35 0 1076 294 96 27 chr13 54239594 54240253 -47632916 - L1MC4 LINE L1 -59 7983 7280 22 35 0 0 chr13 54240453 54240482 -47632687 + AT_rich Low_complexity Low_complexity 1 29 0 2393 226 33 11 chr13 54240968 54241518 -47631651 + MER68 LTR ERV1 1 562 0 748 271 29 0 chr13 54241551 54241795 -47631374 + L1ME1 LINE L1 4502 4752 -1394 233 291 91 17 chr13 54241877 54241948 -47631221 + L1ME1 LINE L1 4963 5027 -1119 2153 84 40 3 chr13 54241948 54242244 -47630925 - AluSg SINE Alu -2 308 2 233 291 91 17 chr13 54242244 54242347 -47630822 + L1ME1 LINE L1 5027 5150 -996 451 132 0 66 chr13 54242355 54242446 -47630723 + AluJ/FRAM SINE Alu 220 304 -8 1437 260 182 30 chr13 54242454 54243318 -47629851 + L1ME1 LINE L1 5175 6161 -5 1518 199 9 25 chr13 54243469 54243786 -47629383 - AluJo SINE Alu 0 312 1 506 115 13 0 chr13 54243855 54243933 -47629236 + MADE1 DNA Mariner 1 79 -1 491 0 17 0 chr13 54243988 54244047 -47629122 + (TG)n Simple_repeat Simple_repeat 1 60 0 311 256 120 8 chr13 54244068 54244201 -47628968 + LTR33 LTR ERVL 372 519 -2 366 301 73 23 chr13 54245197 54245416 -47627753 - MLT1L LTR MaLR -239 376 147 3166 186 71 19 chr13 54245971 54246708 -47626461 - L1MC3 LINE L1 -1 7784 7010 23 0 0 0 chr13 54250109 54250132 -47623037 + AT_rich Low_complexity Low_complexity 1 23 0 194 250 0 19 chr13 54250540 54250592 -47622577 + MIR SINE MIR 156 206 -56 456 313 42 16 chr13 54250864 54251056 -47622113 - MIR SINE MIR -3 259 63 31 44 0 0 chr13 54251865 54251910 -47621259 + AT_rich Low_complexity Low_complexity 1 45 0 706 93 3 46 chr13 54252842 54253168 -47620001 + (TA)n Simple_repeat Simple_repeat 1 311 0 358 253 0 0 chr13 54254365 54254440 -47618729 + MER47A DNA MER2_type 1 75 -291 226 250 0 54 chr13 54254443 54254499 -47618670 - MER47A DNA MER2_type -3 363 311 216 0 0 0 chr13 54255211 54255235 -47617934 + (TAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 54255703 54255733 -47617436 + AT_rich Low_complexity Low_complexity 1 30 0 1151 247 50 65 chr13 54256432 54256989 -47616180 + MER67C LTR ERV1 1 512 -2 637 330 103 41 chr13 54258765 54259640 -47613529 - L1MEc LINE L1 -1303 4912 3984 308 266 64 37 chr13 54259668 54259969 -47613200 - L1MEc LINE L1 -2411 3804 3494 739 213 7 7 chr13 54260043 54260198 -47612971 - FRAM SINE Alu -21 155 1 254 313 14 1 chr13 54260422 54260581 -47612588 - MER58 DNA MER1_type -16 2404 26 369 280 60 99 chr13 54260690 54261018 -47612151 - L1MEc LINE L1 -4549 1847 1540 1443 241 7 0 chr13 54261018 54261312 -47611857 - AluJo SINE Alu -14 298 3 369 280 60 99 chr13 54261312 54261437 -47611732 - L1MEc LINE L1 -4856 1540 1412 338 245 56 66 chr13 54261717 54261913 -47611256 - L1MEc LINE L1 -5256 949 756 11594 159 42 58 chr13 54262106 54263587 -47609582 + Tigger1 DNA MER2_type 1 1505 -913 2671 205 10 10 chr13 54263587 54264167 -47609002 - L1PB4 LINE L1 -2 6154 5575 11594 159 42 58 chr13 54264167 54264582 -47608587 + Tigger1 DNA MER2_type 1505 1925 -493 1936 144 10 3 chr13 54264582 54264887 -47608282 + AluSx SINE Alu 5 311 -1 11594 159 42 58 chr13 54264887 54265447 -47607722 + Tigger1 DNA MER2_type 1925 2418 0 25 90 0 0 chr13 54265509 54265576 -47607593 + AT_rich Low_complexity Low_complexity 1 67 0 200 219 0 0 chr13 54265583 54265624 -47607545 + (TATG)n Simple_repeat Simple_repeat 4 44 0 390 258 21 0 chr13 54265626 54265723 -47607446 + L1MC4a LINE L1 6731 6829 -979 * 716 66 21 7 chr13 54265696 54265804 -47607365 - L1PA2 LINE L1 -318 5837 5742 441 18 0 0 chr13 54265804 54265860 -47607309 + L1PA4 LINE L1 6098 6153 -2 24 0 0 0 chr13 54266206 54266230 -47606939 + AT_rich Low_complexity Low_complexity 1 24 0 232 293 155 0 chr13 54267657 54267773 -47605396 + LTR16A1 LTR ERVL 221 354 -103 383 336 83 42 chr13 54268025 54268266 -47604903 + MIR SINE MIR 2 252 -10 240 35 0 0 chr13 54268270 54268299 -47604870 + (CAT)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr13 54270315 54270349 -47602820 + AT_rich Low_complexity Low_complexity 1 34 0 36 23 0 0 chr13 54270418 54270461 -47602708 + AT_rich Low_complexity Low_complexity 1 43 0 1237 189 215 0 chr13 54270800 54271107 -47602062 + MER93b LTR ERV1 1 373 0 29 60 0 0 chr13 54271206 54271256 -47601913 + AT_rich Low_complexity Low_complexity 1 50 0 21 57 0 0 chr13 54271847 54271882 -47601287 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 54272110 54272132 -47601037 + AT_rich Low_complexity Low_complexity 1 22 0 244 167 0 33 chr13 54272415 54272475 -47600694 + A-rich Low_complexity Low_complexity 3 60 0 216 0 0 0 chr13 54272783 54272807 -47600362 + (CA)n Simple_repeat Simple_repeat 1 24 0 272 312 57 14 chr13 54323679 54323820 -47549349 + LTR33 LTR ERVL 312 458 -63 24 32 0 0 chr13 54324866 54324897 -47548272 + AT_rich Low_complexity Low_complexity 1 31 0 642 236 24 77 chr13 54325106 54325314 -47547855 + MER58A DNA MER1_type 28 224 0 847 324 83 52 chr13 54325666 54326079 -47547090 + ERVL LTR ERVL 1909 2308 -3456 2037 136 0 10 chr13 54326079 54326387 -47546782 + AluSc SINE Alu 1 305 -4 847 324 83 52 chr13 54326387 54326885 -47546284 + ERVL LTR ERVL 2308 2885 -2879 224 145 0 48 chr13 54327047 54327109 -47546060 + (G)n Simple_repeat Simple_repeat 1 59 0 225 0 0 0 chr13 54327389 54327414 -47545755 + (T)n Simple_repeat Simple_repeat 1 25 0 2065 129 0 0 chr13 54327418 54327704 -47545465 + AluSx SINE Alu 6 291 -21 43 47 0 0 chr13 54327706 54327770 -47545399 + AT_rich Low_complexity Low_complexity 1 64 0 1664 208 16 11 chr13 54327775 54328154 -47545015 - L1MB1 LINE L1 -4 6164 5784 228 171 54 0 chr13 54328162 54328273 -47544896 + (TA)n Simple_repeat Simple_repeat 2 118 0 1318 195 8 8 chr13 54328286 54328542 -47544627 - L1MB1 LINE L1 -533 5801 5546 457 354 29 7 chr13 54328542 54328819 -47544350 + ERVL LTR ERVL 2949 3231 -2423 254 294 98 0 chr13 54328968 54329070 -47544099 + ERVL LTR ERVL 3430 3541 -2113 738 315 82 27 chr13 54329122 54329452 -47543717 - MLT1E LTR MaLR -3 590 243 182 41 61 61 chr13 54329603 54329652 -47543517 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 643 250 38 6 chr13 54329652 54329812 -47543357 - MLT1E LTR MaLR -420 173 9 465 330 80 0 chr13 54329998 54330186 -47542983 + ERVL LTR ERVL 4980 5182 -582 1317 214 15 0 chr13 54330372 54330638 -47542531 + MSTB LTR MaLR 1 270 -156 381 359 69 4 chr13 54330640 54330885 -47542284 + L1M4 LINE L1 2270 2530 -3616 409 319 119 61 chr13 54331030 54331945 -47541224 + L1M4 LINE L1 2739 3706 -2440 748 119 30 0 chr13 54332045 54332213 -47540956 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 422 293 107 78 chr13 54332408 54332855 -47540314 + L1MC/D LINE L1 553 1012 -5384 483 277 45 29 chr13 54332927 54333169 -47540000 + L1MC/D LINE L1 1037 1282 -4935 329 316 119 21 chr13 54333177 54333712 -47539457 + L1MC/D LINE L1 4972 5555 -748 26 30 0 0 chr13 54334132 54334165 -47539004 + AT_rich Low_complexity Low_complexity 1 33 0 232 341 0 0 chr13 54334303 54334385 -47538784 - L2 LINE L2 -652 2662 2581 27 62 0 0 chr13 54335350 54335398 -47537771 + AT_rich Low_complexity Low_complexity 1 48 0 1330 129 40 22 chr13 54335855 54336080 -47537089 - MER30 DNA MER1_type 0 230 2 2105 189 9 16 chr13 54336348 54336788 -47536381 - L1MB1 LINE L1 -28 6161 5725 1150 221 28 25 chr13 54336793 54337115 -47536054 - L1MB1 LINE L1 -2328 3818 3496 377 287 107 20 chr13 54337120 54337270 -47535899 - L1MC3 LINE L1 -357 7428 7266 351 158 0 0 chr13 54337895 54337952 -47535217 + Alu SINE Alu 238 294 -8 21 57 0 0 chr13 54338466 54338501 -47534668 + AT_rich Low_complexity Low_complexity 1 35 0 237 313 53 30 chr13 54339793 54339924 -47533245 - L2 LINE L2 -215 3057 2924 247 272 70 53 chr13 54340107 54340221 -47532948 + MIR SINE MIR 52 167 -95 246 316 79 18 chr13 54340233 54340347 -47532822 - L2 LINE L2 0 3313 3193 615 338 104 90 chr13 54340504 54341209 -47531960 - L2 LINE L2 -339 2975 2281 2162 107 3 3 chr13 54341209 54341498 -47531671 + AluSq SINE Alu 1 289 -24 284 0 0 27 chr13 54341505 54341542 -47531627 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 615 338 104 90 chr13 54341542 54341940 -47531229 - L2 LINE L2 -1038 2276 1900 2070 119 50 44 chr13 54342425 54342786 -47530383 - THE1B LTR MaLR -1 363 1 2095 89 28 3 chr13 54343238 54343520 -47529649 + AluY SINE Alu 1 289 -22 21 82 0 0 chr13 54343520 54343569 -47529600 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr13 54344704 54344735 -47528434 + AT_rich Low_complexity Low_complexity 1 31 0 1726 176 55 3 chr13 54345734 54346063 -47527106 - MER7A DNA MER2_type -2 344 1 1907 201 3 0 chr13 54346076 54346440 -47526729 + MER47A DNA MER2_type 2 366 0 6037 209 121 30 chr13 54346831 54348285 -47524884 + MER52A LTR ERV1 217 1700 -55 563 358 53 0 chr13 54348762 54349005 -47524164 - MIR SINE MIR 0 262 7 686 281 50 10 chr13 54350144 54350343 -47522826 - MIR SINE MIR -10 252 46 1313 190 87 69 chr13 54350401 54350790 -47522379 + MSTD LTR MaLR 1 396 0 192 200 0 0 chr13 54351406 54351446 -47521723 + (TA)n Simple_repeat Simple_repeat 2 41 0 4901 206 87 4 chr13 54351489 54352449 -47520720 - L1MC1 LINE L1 -11 6322 5443 189 74 0 0 chr13 54352449 54352476 -47520693 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4901 206 87 4 chr13 54352476 54352891 -47520278 - L1MC1 LINE L1 -890 5443 4828 321 26 0 0 chr13 54352891 54352929 -47520240 + (TG)n Simple_repeat Simple_repeat 2 39 0 4901 206 87 4 chr13 54352929 54352965 -47520204 - L1MC1 LINE L1 -1505 4828 4796 350 286 36 84 chr13 54353945 54354442 -47518727 - L1MC4 LINE L1 -137 7905 7324 318 102 20 0 chr13 54354700 54354749 -47518420 - 5S rRNA rRNA -71 50 1 310 231 22 11 chr13 54354760 54354851 -47518318 - Charlie2a DNA MER1_type -1203 1659 1568 208 167 24 0 chr13 54354969 54355011 -47518158 + GA-rich Low_complexity Low_complexity 2 44 0 258 179 57 123 chr13 54355032 54355138 -47518031 - Charlie2b DNA MER1_type -2113 669 571 250 240 73 52 chr13 54355132 54355228 -47517941 - Charlie2b DNA MER1_type -2534 328 231 * 447 134 0 0 chr13 54355239 54355321 -47517848 + (TC)n Simple_repeat Simple_repeat 1 82 0 491 246 50 60 chr13 54355326 54355525 -47517644 - Charlie2b DNA MER1_type -2659 203 7 264 266 181 0 chr13 54355554 54355648 -47517521 - MIR SINE MIR 0 262 152 249 216 23 23 chr13 54356303 54356391 -47516778 + (TA)n Simple_repeat Simple_repeat 1 88 0 229 348 43 0 chr13 54357124 54357216 -47515953 + MIR SINE MIR 45 140 -122 360 0 0 0 chr13 54357324 54357364 -47515805 + (TG)n Simple_repeat Simple_repeat 2 41 0 207 69 0 0 chr13 54357365 54357394 -47515775 + (GA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr13 54357758 54357782 -47515387 + AT_rich Low_complexity Low_complexity 1 24 0 329 141 62 0 chr13 54358352 54358416 -47514753 + MLT1J2 LTR MaLR 362 429 -21 1647 197 7 17 chr13 54359315 54359615 -47513554 + AluJb SINE Alu 1 297 -15 13360 48 7 0 chr13 54360042 54361747 -47511422 + L1P LINE L1 1806 3521 -2625 233 297 11 11 chr13 54361748 54361839 -47511330 + MLT1I LTR MaLR 87 177 -232 389 316 40 53 chr13 54362581 54362806 -47510363 + MIR SINE MIR 20 241 -21 244 136 45 61 chr13 54363473 54363539 -47509630 + MADE1 DNA Mariner 4 68 -12 2044 71 3 61 chr13 54363893 54364225 -47508944 - AluY SINE Alu 0 315 1 1889 138 30 7 chr13 54364225 54364528 -47508641 - AluSx SINE Alu -1 311 1 25 51 0 0 chr13 54365669 54365708 -47507461 + AT_rich Low_complexity Low_complexity 1 39 0 2409 110 41 15 chr13 54365761 54366153 -47507016 + L1MA3 LINE L1 5691 6092 -213 21 0 0 0 chr13 54366851 54366872 -47506297 + AT_rich Low_complexity Low_complexity 1 21 0 301 277 75 25 chr13 54367168 54367327 -47505842 - L1ME2 LINE L1 -213 5951 5785 207 0 0 0 chr13 54367453 54367476 -47505693 + (T)n Simple_repeat Simple_repeat 1 23 0 255 270 104 43 chr13 54367850 54368013 -47505156 - L1M2 LINE L1 -4280 2569 2397 534 309 89 58 chr13 54368141 54368604 -47504565 - L1MEd LINE L1 -4883 1236 760 2510 232 27 57 chr13 54368611 54369200 -47503969 - L1MD2 LINE L1 -294 6459 5854 2304 97 0 7 chr13 54369200 54369508 -47503661 - AluSq SINE Alu -7 306 1 2510 232 27 57 chr13 54369508 54369674 -47503495 - L1MD2 LINE L1 -899 5854 5729 1605 174 26 33 chr13 54369674 54369856 -47503313 - AluJo SINE Alu -9 303 122 186 43 0 0 chr13 54369856 54369879 -47503290 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1605 174 26 33 chr13 54369879 54370001 -47503168 - AluJo SINE Alu -190 122 1 2510 232 27 57 chr13 54370001 54370173 -47502996 - L1MD2 LINE L1 -1024 5729 5553 607 225 78 25 chr13 54370175 54370255 -47502914 - L1MD2 LINE L1 -4031 2509 2435 1595 183 0 7 chr13 54370255 54370534 -47502635 - AluSx SINE Alu -10 302 26 607 225 78 25 chr13 54370534 54370887 -47502282 - L1MD2 LINE L1 -4105 2435 2028 * 988 157 16 27 chr13 54370886 54371071 -47502098 + L1PA16 LINE L1 5961 6143 -23 4283 261 54 52 chr13 54371086 54372821 -47500348 - L1MD2 LINE L1 -4638 1902 165 267 122 0 0 chr13 54372888 54372937 -47500232 + (TG)n Simple_repeat Simple_repeat 2 50 0 527 330 94 44 chr13 54373008 54373027 -47500142 + L2 LINE L2 2517 2534 -779 6056 154 63 10 chr13 54373027 54373541 -47499628 + Tigger3b DNA MER2_type 1 486 -2542 1855 146 7 0 chr13 54373541 54373822 -47499347 - AluSx SINE Alu -29 283 1 6056 154 63 10 chr13 54373822 54374476 -47498693 + Tigger3b DNA MER2_type 486 1231 0 527 330 94 44 chr13 54374476 54374992 -47498177 + L2 LINE L2 2534 3075 -238 284 338 58 0 chr13 54375508 54375647 -47497522 + MIR SINE MIR 33 179 -83 28 48 0 0 chr13 54376145 54376187 -47496982 + AT_rich Low_complexity Low_complexity 1 42 0 194 0 39 0 chr13 54376187 54376213 -47496956 + (CA)n Simple_repeat Simple_repeat 2 28 0 309 335 45 22 chr13 54376911 54377090 -47496079 - MIR SINE MIR -60 202 20 1817 114 3 85 chr13 54377095 54377412 -47495757 - AluSx SINE Alu -1 311 21 207 269 0 0 chr13 54377701 54377753 -47495416 - L3 LINE CR1 -488 1089 1038 192 40 0 0 chr13 54378014 54378039 -47495130 + (TG)n Simple_repeat Simple_repeat 2 26 0 1722 156 61 119 chr13 54379128 54379488 -47493681 - Charlie3 DNA MER1_type 0 2712 1 234 0 0 0 chr13 54380447 54380473 -47492696 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 21 71 0 0 chr13 54380597 54380639 -47492530 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 54380994 54381015 -47492154 + AT_rich Low_complexity Low_complexity 1 21 0 239 347 128 5 chr13 54382184 54382380 -47490789 + L3 LINE CR1 1357 1576 -1 30 27 0 0 chr13 54383236 54383273 -47489896 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr13 54383491 54383512 -47489657 + AT_rich Low_complexity Low_complexity 1 21 0 537 258 108 12 chr13 54384945 54385185 -47487984 - L1ME3A LINE L1 -233 5937 5675 12573 178 46 29 chr13 54385189 54388116 -47485053 + L1MA3 LINE L1 2131 5006 -2718 2852 13 0 0 chr13 54388116 54388432 -47484737 + AluYb8 SINE Alu 1 316 -2 12573 178 46 29 chr13 54388432 54389773 -47483396 + L1MA3 LINE L1 5006 6323 -1401 1809 160 3 38 chr13 54389773 54390092 -47483077 - AluSx SINE Alu -4 308 1 12573 178 46 29 chr13 54390092 54390255 -47482914 + L1MA3 LINE L1 6323 6482 -1242 2012 140 117 31 chr13 54390255 54390647 -47482522 - MSTA LTR MaLR -2 426 1 12573 178 46 29 chr13 54390647 54391185 -47481984 + L1MA3 LINE L1 6482 7206 -518 2104 113 3 7 chr13 54391185 54391485 -47481684 + AluSq SINE Alu 1 299 -14 12573 178 46 29 chr13 54391485 54391737 -47481432 + L1MA3 LINE L1 7206 7452 -272 1663 186 0 3 chr13 54392425 54392748 -47480421 - L1MA5 LINE L1 0 6300 5979 521 59 0 0 chr13 54393150 54393218 -47479951 + L1PA6 LINE L1 6078 6145 -9 22 56 0 0 chr13 54394316 54394352 -47478817 + AT_rich Low_complexity Low_complexity 1 36 0 260 342 101 0 chr13 54395220 54395299 -47477870 + L2 LINE L2 3148 3234 -38 317 300 58 0 chr13 54395466 54395586 -47477583 - L1ME3 LINE L1 -46 6116 5990 186 435 12 0 chr13 54396953 54397038 -47476131 - L2 LINE L2 -9 3263 3178 200 282 94 0 chr13 54397606 54397691 -47475478 - L2 LINE L2 -12 3301 3209 315 240 96 39 chr13 54397874 54397978 -47475191 - MIR SINE MIR -14 248 139 252 0 0 0 chr13 54398258 54398286 -47474883 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2614 39 0 0 chr13 54398683 54398994 -47474175 + AluY SINE Alu 1 311 0 3739 205 107 103 chr13 54399431 54400503 -47472666 + L1MCb LINE L1 263 1530 -5034 1936 100 57 0 chr13 54400503 54400784 -47472385 + AluY SINE Alu 1 297 -14 3739 205 107 103 chr13 54400784 54401330 -47471839 + L1MCb LINE L1 1530 2072 -4492 4200 260 82 23 chr13 54401360 54403586 -47469583 + L1MCb LINE L1 2192 4575 -1989 4874 48 5 0 chr13 54403586 54404185 -47468984 + L1PA5 LINE L1 5551 6152 -2 1131 188 13 22 chr13 54404195 54404419 -47468750 + AluJo SINE Alu 87 308 -4 2230 94 0 3 chr13 54404444 54404742 -47468427 - AluSp SINE Alu -15 298 2 298 311 111 28 chr13 54404765 54404945 -47468224 + MER102a DNA MER1_type 113 307 -23 500 204 0 0 chr13 54405174 54405272 -47467897 + MER103 DNA DNA 1 98 -68 229 278 46 0 chr13 54405389 54405497 -47467672 + L1MCb LINE L1 4551 4663 -1901 1015 169 54 42 chr13 54405597 54405857 -47467312 - LTR48 LTR ERV1 0 787 525 296 104 125 0 chr13 54405900 54405948 -47467221 - LTR48 LTR ERV1 -402 385 332 378 221 77 0 chr13 54405950 54406054 -47467115 + L1MC2 LINE L1 4564 4675 -1889 218 176 39 0 chr13 54406121 54406172 -47466997 + (TA)n Simple_repeat Simple_repeat 1 53 0 233 194 32 0 chr13 54406180 54406242 -47466927 - LTR66 LTR ERVL -172 438 375 456 221 11 28 chr13 54406242 54406423 -47466746 + (TA)n Simple_repeat Simple_repeat 2 179 0 3928 238 62 12 chr13 54406449 54407239 -47465930 + L1MC2 LINE L1 4735 5484 -1278 219 36 0 0 chr13 54407239 54407267 -47465902 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 3928 238 62 12 chr13 54407267 54408397 -47464772 + L1MC2 LINE L1 5484 6754 -8 273 333 0 65 chr13 54409209 54409332 -47463837 + MIR3 SINE MIR 70 184 -24 24 0 0 0 chr13 54409383 54409407 -47463762 + AT_rich Low_complexity Low_complexity 1 24 0 369 349 24 6 chr13 54409841 54410010 -47463159 + MER5B DNA MER1_type 3 174 -4 641 300 39 13 chr13 54410259 54410489 -47462680 - MIR SINE MIR -3 259 24 1732 144 26 13 chr13 54411218 54411524 -47461645 - AluSx SINE Alu -2 310 1 393 333 9 0 chr13 54411751 54411856 -47461313 - MER81 DNA DNA 0 114 9 1160 279 20 59 chr13 54411858 54412266 -47460903 - MLT1E LTR MaLR -2 591 200 674 316 26 13 chr13 54412278 54412512 -47460657 + MLT1E LTR MaLR 355 591 -2 1843 157 147 5 chr13 54412523 54412898 -47460271 + MSTA LTR MaLR 1 428 0 468 0 0 0 chr13 54412942 54412994 -47460175 + (CA)n Simple_repeat Simple_repeat 1 52 0 516 125 39 29 chr13 54413240 54413344 -47459825 - L1PA16 LINE L1 -9 6157 6053 1526 172 25 14 chr13 54413344 54413631 -47459538 + L1PA16 LINE L1 5738 6031 -135 553 252 47 0 chr13 54413962 54414089 -47459080 - FLAM_A SINE Alu 0 133 1 384 156 0 0 chr13 54414429 54414506 -47458663 + L1MA7 LINE L1 6207 6283 -8 24 0 0 0 chr13 54414567 54414591 -47458578 + AT_rich Low_complexity Low_complexity 1 24 0 190 315 19 0 chr13 54414860 54414914 -47458255 + L2 LINE L2 3242 3296 -17 2239 68 3 53 chr13 54415076 54415399 -47457770 - AluY SINE Alu -4 307 1 197 148 0 37 chr13 54415729 54415783 -47457386 + (TATG)n Simple_repeat Simple_repeat 2 53 0 238 186 29 29 chr13 54415790 54415860 -47457309 + (CAGAGA)n Simple_repeat Simple_repeat 3 72 0 24 32 0 0 chr13 54416112 54416143 -47457026 + AT_rich Low_complexity Low_complexity 1 31 0 2090 112 6 10 chr13 54416207 54416520 -47456649 + AluSx SINE Alu 1 312 0 1905 149 33 0 chr13 54416926 54417285 -47455884 + AluSx SINE Alu 1 369 0 208 354 100 23 chr13 54417599 54417949 -47455220 - L2 LINE L2 -584 2730 2354 1310 119 5 10 chr13 54418520 54418722 -47454447 + L1PA10 LINE L1 5957 6157 -11 250 109 0 22 chr13 54418800 54418846 -47454323 - L1MA9 LINE L1 0 6312 6268 180 0 0 0 chr13 54418851 54418871 -47454298 + (CAA)n Simple_repeat Simple_repeat 2 21 0 265 302 35 17 chr13 54418887 54419003 -47454166 + MIR SINE MIR 84 201 -61 1433 233 0 13 chr13 54419036 54419349 -47453820 + AluJo SINE Alu 1 309 -3 248 197 15 15 chr13 54419909 54419975 -47453194 + (TTG)n Simple_repeat Simple_repeat 3 68 0 24 32 0 0 chr13 54420214 54420245 -47452924 + AT_rich Low_complexity Low_complexity 1 31 0 201 323 0 20 chr13 54421894 54421993 -47451176 + CT-rich Low_complexity Low_complexity 2 98 0 863 239 162 8 chr13 54422642 54422901 -47450268 + MLT1E LTR MaLR 295 593 0 415 273 115 36 chr13 54423402 54423567 -47449602 - MER3 DNA MER1_type -11 198 21 46 33 0 0 chr13 54423614 54423674 -47449495 + AT_rich Low_complexity Low_complexity 1 60 0 209 210 48 0 chr13 54424056 54424118 -47449051 + (TAA)n Simple_repeat Simple_repeat 2 66 0 23 33 0 0 chr13 54424597 54424627 -47448542 + AT_rich Low_complexity Low_complexity 1 30 0 811 176 31 13 chr13 54424822 54424981 -47448188 + FRAM SINE Alu 1 162 -4 21 0 0 0 chr13 54424981 54425002 -47448167 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 54425030 54425058 -47448111 + AT_rich Low_complexity Low_complexity 1 28 0 360 331 29 12 chr13 54425980 54426152 -47447017 - MER45A DNA AcHobo 0 178 4 5554 161 6 14 chr13 54426183 54427183 -47445986 - L1MA4 LINE L1 -6 6294 5303 1187 240 103 24 chr13 54430515 54431107 -47442062 - L1M4 LINE L1 -1326 4820 4182 864 110 0 8 chr13 54431142 54431260 -47441909 - AluSg SINE Alu -180 130 14 2297 89 0 0 chr13 54432076 54432368 -47440801 - AluSq SINE Alu -21 292 1 23 0 0 0 chr13 54432979 54433002 -47440167 + AT_rich Low_complexity Low_complexity 1 23 0 331 355 50 50 chr13 54433238 54433480 -47439689 + MIR SINE MIR 9 250 -12 238 330 170 10 chr13 54433504 54433604 -47439565 - L2 LINE L2 0 3272 3157 524 327 61 43 chr13 54434125 54434617 -47438552 - L2 LINE L2 -626 2688 2188 23 0 0 0 chr13 54436335 54436358 -47436811 + AT_rich Low_complexity Low_complexity 1 23 0 36 40 0 0 chr13 54436609 54436659 -47436510 + AT_rich Low_complexity Low_complexity 1 50 0 233 220 0 20 chr13 54436706 54436756 -47436413 + (CATA)n Simple_repeat Simple_repeat 4 52 0 237 163 0 0 chr13 54438074 54438123 -47435046 + GA-rich Low_complexity Low_complexity 3 51 0 343 324 98 81 chr13 54438366 54438947 -47434222 - L1M2 LINE L1 -5716 1133 543 231 88 0 0 chr13 54439160 54439194 -47433975 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr13 54440563 54440588 -47432581 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr13 54440638 54440676 -47432493 + AT_rich Low_complexity Low_complexity 1 38 0 385 266 22 22 chr13 54441126 54441265 -47431904 + GA-rich Low_complexity Low_complexity 2 140 0 2234 149 81 0 chr13 54441898 54442294 -47430875 - MSTC LTR MaLR 0 428 1 1898 157 131 16 chr13 54442566 54442948 -47430221 - MSTA LTR MaLR -2 426 1 29 94 0 0 chr13 54442951 54443036 -47430133 + AT_rich Low_complexity Low_complexity 1 85 0 2195 114 3 0 chr13 54443559 54443858 -47429311 - AluSg SINE Alu -10 300 1 211 222 19 0 chr13 54443917 54443971 -47429198 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 249 83 0 0 chr13 54445666 54445702 -47427467 + (TG)n Simple_repeat Simple_repeat 2 37 0 1331 220 62 49 chr13 54445702 54446088 -47427081 - MSTD LTR MaLR -5 391 1 196 297 119 50 chr13 54446217 54446318 -47426851 + L2 LINE L2 3146 3253 -19 844 312 46 53 chr13 54446718 54447450 -47425719 - L2 LINE L2 -1 3312 2580 684 198 36 53 chr13 54447712 54448000 -47425169 + L1MA9 LINE L1 6022 6275 -37 466 331 44 0 chr13 54448229 54448365 -47424804 + MIR SINE MIR 2 143 -119 23 0 0 0 chr13 54449227 54449250 -47423919 + AT_rich Low_complexity Low_complexity 1 23 0 561 68 0 0 chr13 54449474 54449547 -47423622 - AluSp/q SINE Alu -15 298 226 1637 202 11 14 chr13 54450260 54450622 -47422547 + MER46B DNA MER2_type 1 236 0 22 0 0 0 chr13 54451058 54451080 -47422089 + AT_rich Low_complexity Low_complexity 1 22 0 200 200 0 117 chr13 54451130 54451190 -47421979 - L2 LINE L2 0 3272 3220 3066 42 3 0 chr13 54451339 54451721 -47421448 + L1PA4 LINE L1 5770 6152 -3 201 169 0 62 chr13 54451762 54451827 -47421342 + A-rich Low_complexity Low_complexity 3 63 0 27 62 0 0 chr13 54452595 54452643 -47420526 + AT_rich Low_complexity Low_complexity 1 48 0 399 325 90 24 chr13 54453502 54453714 -47419455 + MIR SINE MIR 30 255 -7 473 289 109 36 chr13 54454919 54455223 -47417946 - L2 LINE L2 -101 3212 2887 555 278 30 37 chr13 54455841 54456136 -47417033 - L1MC5 LINE L1 -60 7901 7609 319 257 14 14 chr13 54457122 54457262 -47415907 + (TA)n Simple_repeat Simple_repeat 2 141 0 325 299 3 9 chr13 54457281 54457491 -47415678 + (TA)n Simple_repeat Simple_repeat 1 208 0 191 172 0 17 chr13 54457562 54457620 -47415549 + (TA)n Simple_repeat Simple_repeat 1 57 0 212 236 0 0 chr13 54457672 54457727 -47415442 + CT-rich Low_complexity Low_complexity 1 55 0 193 345 135 20 chr13 54458266 54458466 -47414703 + L3 LINE CR1 1246 1468 -109 33 43 0 0 chr13 54458644 54458691 -47414478 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr13 54459177 54459202 -47413967 + AT_rich Low_complexity Low_complexity 1 25 0 2160 90 7 23 chr13 54459498 54459799 -47413370 - AluSq SINE Alu -17 296 1 261 0 0 0 chr13 54460015 54460044 -47413125 + (TG)n Simple_repeat Simple_repeat 2 30 0 198 346 58 10 chr13 54461857 54461961 -47411208 + L2 LINE L2 2523 2631 -683 422 319 92 42 chr13 54462180 54462540 -47410629 + L2 LINE L2 2926 3303 -10 2499 127 45 32 chr13 54462808 54463272 -47409897 + L1PA16 LINE L1 5694 6163 -3 1297 195 0 55 chr13 54463766 54464023 -47409146 + AluJo SINE Alu 3 245 -67 1253 235 81 44 chr13 54464112 54464542 -47408627 + MLT1C LTR MaLR 8 453 -14 24 0 0 0 chr13 54464675 54464699 -47408470 + AT_rich Low_complexity Low_complexity 1 24 0 414 246 18 0 chr13 54465144 54465254 -47407915 - MER70B LTR ERVL -11 567 456 414 266 95 99 chr13 54466540 54466925 -47406244 - MER57A LTR ERV1 0 403 49 40 49 0 0 chr13 54467077 54467138 -47406031 + AT_rich Low_complexity Low_complexity 1 61 0 432 288 8 8 chr13 54467258 54467390 -47405779 + MLT1J LTR MaLR 378 509 -2 1804 174 132 8 chr13 54468421 54468801 -47404368 - MSTA LTR MaLR 0 428 2 263 237 197 0 chr13 54469140 54469216 -47403953 - L2 LINE L2 0 3313 3223 23 0 0 0 chr13 54469482 54469505 -47403664 + AT_rich Low_complexity Low_complexity 1 23 0 354 138 0 0 chr13 54469995 54470053 -47403116 + (CTG)n Simple_repeat Simple_repeat 3 60 0 25 83 0 0 chr13 54470053 54470113 -47403056 + AT_rich Low_complexity Low_complexity 1 60 0 306 330 32 0 chr13 54471748 54471842 -47401327 - MER91B DNA MER1_type 0 190 94 483 307 7 40 chr13 54471842 54471992 -47401177 - MER91B DNA MER1_type -43 147 3 219 232 0 0 chr13 54472203 54472259 -47400910 + (TA)n Simple_repeat Simple_repeat 1 56 0 231 114 0 0 chr13 54472474 54472509 -47400660 + (TA)n Simple_repeat Simple_repeat 2 36 0 1932 138 0 7 chr13 54472510 54472806 -47400363 - AluSp SINE Alu -13 300 7 2127 83 28 0 chr13 54473420 54473709 -47399460 + AluSp SINE Alu 1 297 -16 31 0 0 0 chr13 54474736 54474767 -47398402 + AT_rich Low_complexity Low_complexity 1 31 0 997 237 28 13 chr13 54475177 54475494 -47397675 - L1M4 LINE L1 -845 5301 4980 6744 34 0 0 chr13 54475604 54476422 -47396747 - L1PA3 LINE L1 -1119 5027 4210 7473 36 1 0 chr13 54476422 54477550 -47395619 + L1PA3 LINE L1 5024 6152 -3 4640 136 30 75 chr13 54478308 54479220 -47393949 - MER4D LTR ERV1 -1 871 1 2410 161 32 32 chr13 54481582 54482084 -47391085 - L1MA10 LINE L1 0 6334 5833 330 360 48 42 chr13 54482533 54482904 -47390265 + L2 LINE L2 2701 3078 -194 232 86 52 35 chr13 54482982 54483040 -47390129 - L1MCa LINE L1 -4362 2064 2006 * 294 300 0 0 chr13 54483013 54483103 -47390066 + L1MC4 LINE L1 6614 6703 -1339 251 284 10 78 chr13 54483188 54483290 -47389879 + L2 LINE L2 3176 3270 -2 441 0 0 0 chr13 54483637 54483686 -47389483 + (TG)n Simple_repeat Simple_repeat 2 50 0 1996 136 17 7 chr13 54483925 54484227 -47388942 + AluSg SINE Alu 3 307 -3 1683 185 0 22 chr13 54484304 54484617 -47388552 - AluJb SINE Alu -6 306 1 757 243 75 122 chr13 54485164 54485789 -47387380 + LTR4 LTR ERV1 1 596 0 240 130 0 0 chr13 54486855 54486901 -47386268 + (TG)n Simple_repeat Simple_repeat 2 47 0 2233 85 4 0 chr13 54488842 54489123 -47384046 + AluSg SINE Alu 6 287 -23 1458 234 37 0 chr13 54489272 54489597 -47383572 - MER58B DNA MER1_type -4 337 1 189 0 0 0 chr13 54489879 54489900 -47383269 + (TC)n Simple_repeat Simple_repeat 2 22 0 363 340 121 16 chr13 54489932 54490247 -47382922 - L1M4 LINE L1 -1861 4285 3938 2053 258 54 12 chr13 54490254 54490906 -47382263 - L1ME1 LINE L1 -22 6144 5470 21 36 0 0 chr13 54490921 54490949 -47382220 + AT_rich Low_complexity Low_complexity 1 28 0 581 194 9 0 chr13 54491049 54491157 -47382012 - MLT1A1 LTR MaLR -43 322 214 471 142 22 0 chr13 54491420 54491554 -47381615 + (TA)n Simple_repeat Simple_repeat 1 137 0 641 291 123 56 chr13 54492110 54492467 -47380702 + L2 LINE L2 2928 3308 -5 842 239 32 5 chr13 54492478 54492696 -47380473 + L1MC2 LINE L1 6096 6319 -25 309 293 10 20 chr13 54492708 54492807 -47380362 + GA-rich Low_complexity Low_complexity 3 100 0 289 293 87 13 chr13 54493076 54493226 -47379943 - LTR33 LTR ERVL -271 250 90 201 171 0 0 chr13 54493800 54493835 -47379334 + (TAA)n Simple_repeat Simple_repeat 2 36 0 435 306 67 6 chr13 54493843 54494023 -47379146 - MIR SINE MIR -21 241 51 559 321 34 56 chr13 54494633 54494901 -47378268 - MIR SINE MIR 0 262 1 1656 261 77 2 chr13 54494942 54495463 -47377706 + MER90 LTR ERV1 6 565 -10 182 114 0 29 chr13 54495606 54495641 -47377528 + (GA)n Simple_repeat Simple_repeat 1 34 0 324 0 0 0 chr13 54496817 54496853 -47376316 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr13 54497322 54497343 -47375826 + AT_rich Low_complexity Low_complexity 1 21 0 1210 167 74 0 chr13 54497475 54497744 -47375425 - L1MA7 LINE L1 -8 6283 5995 334 347 64 46 chr13 54497800 54498322 -47374847 - L1MDb LINE L1 -4986 1601 1031 198 0 0 0 chr13 54498867 54498889 -47374280 + (TTA)n Simple_repeat Simple_repeat 3 24 0 13790 106 6 7 chr13 54498889 54501729 -47371440 - L1PA7 LINE L1 -18 6136 3303 6208 102 8 3 chr13 54501729 54502639 -47370530 - L1PA7 LINE L1 -3111 3035 2122 243 291 10 10 chr13 54502648 54502751 -47370418 + L1M4 LINE L1 2938 3040 -3106 639 306 113 25 chr13 54502890 54503543 -47369626 + L1M4 LINE L1 3281 3991 -2155 726 259 99 31 chr13 54503670 54503964 -47369205 + L1ME3A LINE L1 5848 6161 -9 35 54 0 0 chr13 54504932 54504988 -47368181 + AT_rich Low_complexity Low_complexity 1 56 0 1340 73 0 0 chr13 54505052 54505217 -47367952 + AluSc SINE Alu 143 307 -2 31 44 0 0 chr13 54505271 54505316 -47367853 + AT_rich Low_complexity Low_complexity 1 45 0 841 137 0 0 chr13 54505335 54505459 -47367710 - AluJb SINE Alu -188 124 1 42 86 0 0 chr13 54505621 54505726 -47367443 + AT_rich Low_complexity Low_complexity 1 105 0 21 36 0 0 chr13 54506648 54506676 -47366493 + AT_rich Low_complexity Low_complexity 1 28 0 346 289 144 11 chr13 54506748 54506928 -47366241 - MIR SINE MIR -12 250 47 45 83 0 0 chr13 54507927 54508035 -47365134 + AT_rich Low_complexity Low_complexity 1 108 0 182 250 14 0 chr13 54508336 54508408 -47364761 + (TA)n Simple_repeat Simple_repeat 2 74 0 435 324 21 31 chr13 54508420 54508678 -47364491 + L1MC/D LINE L1 5488 5744 -457 1104 262 126 0 chr13 54509000 54509317 -47363852 + LTR18A LTR ERVL 1 357 0 249 33 0 0 chr13 54509401 54509431 -47363738 + (A)n Simple_repeat Simple_repeat 1 30 0 345 347 84 47 chr13 54509610 54509953 -47363216 + HAL1 LINE L1 1095 1450 -1057 337 337 66 28 chr13 54509983 54510271 -47362898 + L1ME LINE L1 5521 5819 -302 21 82 0 0 chr13 54510327 54510376 -47362793 + AT_rich Low_complexity Low_complexity 1 49 0 312 321 56 86 chr13 54511166 54511434 -47361735 + MIR SINE MIR 2 261 -1 418 314 74 23 chr13 54512248 54512423 -47360746 + MIR SINE MIR 20 203 -59 259 273 111 45 chr13 54513276 54513474 -47359695 + L2 LINE L2 1565 1775 -1539 41533 39 2 5 chr13 54513474 54519387 -47353782 + L1PA4 LINE L1 264 6155 0 314 253 114 51 chr13 54520850 54521008 -47352161 - L1M4 LINE L1 -1579 4567 4400 303 272 22 7 chr13 54521028 54521164 -47352005 - L1M4 LINE L1 -1822 4324 4187 1198 270 174 28 chr13 54521187 54521872 -47351297 - LTR50 LTR ERVL -8 787 3 239 274 0 0 chr13 54521874 54521936 -47351233 - L1M4 LINE L1 -1980 4166 4105 323 305 81 29 chr13 54522130 54522478 -47350691 - L1M4 LINE L1 -2887 3259 2894 189 74 0 0 chr13 54522818 54522845 -47350324 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 214 302 0 0 chr13 54523935 54523988 -47349181 - MIR SINE MIR -10 252 200 333 0 0 0 chr13 54524313 54524350 -47348819 + (TG)n Simple_repeat Simple_repeat 1 37 0 270 301 14 0 chr13 54524721 54524794 -47348375 + Charlie5 DNA MER1_type 2 75 -2537 273 308 196 8 chr13 54524819 54524952 -47348217 - L2 LINE L2 -448 2866 2709 308 359 67 38 chr13 54525318 54525689 -47347480 + L2 LINE L2 1867 2248 -1066 23 0 0 0 chr13 54526251 54526274 -47346895 + AT_rich Low_complexity Low_complexity 1 23 0 2140 127 0 0 chr13 54526306 54526613 -47346556 - AluSc SINE Alu -2 307 1 188 149 21 0 chr13 54526622 54526669 -47346500 + (TA)n Simple_repeat Simple_repeat 1 48 0 230 271 0 0 chr13 54527023 54527071 -47346098 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 763 226 54 0 chr13 54528326 54528494 -47344675 + MER58A DNA MER1_type 48 224 0 23 0 0 0 chr13 54528500 54528523 -47344646 + AT_rich Low_complexity Low_complexity 1 23 0 992 233 134 25 chr13 54528821 54529186 -47343983 - LTR52 LTR ERVL -2 419 15 1663 178 7 7 chr13 54529523 54529826 -47343343 - AluJb SINE Alu -9 303 1 1963 103 33 17 chr13 54530158 54530458 -47342711 - AluY SINE Alu -6 305 1 2799 138 16 44 chr13 54530662 54531213 -47341956 - L1MA4A LINE L1 -11 6292 5757 2002 116 7 0 chr13 54531731 54532025 -47341144 - AluSg SINE Alu -14 296 1 639 292 24 10 chr13 54532196 54532405 -47340764 + LTR16A LTR ERVL 144 355 -95 21 71 0 0 chr13 54533105 54533147 -47340022 + AT_rich Low_complexity Low_complexity 1 42 0 2626 168 73 52 chr13 54533157 54533455 -47339714 - MER7C DNA MER2_type -2426 602 312 1708 144 161 0 chr13 54533455 54533802 -47339367 - MER57A LTR ERV1 0 403 1 2626 168 73 52 chr13 54533802 54534093 -47339076 - MER7C DNA MER2_type -2716 312 1 24 0 0 0 chr13 54534093 54534117 -47339052 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 54534283 54534307 -47338862 + AT_rich Low_complexity Low_complexity 1 24 0 220 197 14 14 chr13 54534666 54534737 -47338432 + (TATG)n Simple_repeat Simple_repeat 2 72 0 210 351 0 44 chr13 54535197 54535311 -47337858 - L2 LINE L2 -4 3268 3160 964 301 209 14 chr13 54535751 54536406 -47336763 + LTR50 LTR ERVL 1 783 -12 197 353 121 0 chr13 54536984 54537100 -47336069 - L2 LINE L2 -5 3267 3138 2301 50 0 4 chr13 54537103 54537407 -47335762 + AluY SINE Alu 3 305 0 2060 156 8 27 chr13 54538831 54539202 -47333967 + THE1B LTR MaLR 1 364 0 703 330 68 56 chr13 54539308 54539547 -47333622 + L2 LINE L2 2532 2767 -546 2152 92 7 3 chr13 54539547 54539865 -47333304 + AluSp SINE Alu 1 319 0 703 330 68 56 chr13 54539865 54540389 -47332780 + L2 LINE L2 2767 3312 -1 29 47 0 0 chr13 54540745 54540788 -47332381 + AT_rich Low_complexity Low_complexity 1 43 0 1136 223 45 85 chr13 54541896 54542341 -47330828 + LTR37B LTR ERV1 1 427 -41 1275 192 34 87 chr13 54542497 54542878 -47330291 + MLT1A1 LTR MaLR 1 361 -4 194 0 39 0 chr13 54542920 54542946 -47330223 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 182 402 80 18 chr13 54542949 54543061 -47330108 + L2 LINE L2 1052 1170 -2144 213 318 16 0 chr13 54543176 54543239 -47329930 + L2 LINE L2 1381 1444 -1870 2388 208 33 17 chr13 54545216 54545792 -47327377 - L1MD3 LINE L1 0 7995 7411 320 247 52 21 chr13 54545792 54545889 -47327280 - MLT1F1 LTR MaLR -433 134 35 297 286 65 39 chr13 54545908 54546062 -47327107 - L1MC3 LINE L1 -1312 6473 6316 21 82 0 0 chr13 54546791 54546840 -47326329 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr13 54546905 54546930 -47326239 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 54546961 54546989 -47326180 + AT_rich Low_complexity Low_complexity 1 28 0 228 298 128 28 chr13 54548185 54548326 -47324843 - MER117 DNA MER1_type -1 196 42 1999 152 0 3 chr13 54548412 54548721 -47324448 - AluSx SINE Alu -4 308 1 21 0 0 0 chr13 54548728 54548749 -47324420 + AT_rich Low_complexity Low_complexity 1 21 0 381 298 0 0 chr13 54548858 54548962 -47324207 + MIR SINE MIR 99 202 -60 2265 268 127 24 chr13 54549010 54549664 -47323505 + L1MC3 LINE L1 6559 7145 -640 2223 149 66 10 chr13 54549664 54550073 -47323096 + MSTB1 LTR MaLR 1 432 0 2265 268 127 24 chr13 54550073 54550524 -47322645 + L1MC3 LINE L1 7145 7777 -8 757 237 59 33 chr13 54550539 54550809 -47322360 + L1ME1 LINE L1 5880 6156 -10 25 75 0 0 chr13 54550938 54550991 -47322178 + AT_rich Low_complexity Low_complexity 1 53 0 2175 90 4 0 chr13 54551396 54551701 -47321468 - AluSp SINE Alu 0 308 3 1251 175 56 16 chr13 54553009 54553261 -47319908 - LTR1B LTR ERV1 -6 820 559 1349 151 135 12 chr13 54553362 54553614 -47319555 - LTR1B LTR ERV1 -542 284 2 2080 169 86 2 chr13 54554121 54554552 -47318617 + L1MA9 LINE L1 5681 6147 -165 540 55 55 27 chr13 54554563 54554673 -47318496 + GA-rich Low_complexity Low_complexity 2 114 0 521 169 0 54 chr13 54554688 54554818 -47318351 + L1MA7 LINE L1 6155 6277 -14 1942 101 29 0 chr13 54555703 54555979 -47317190 + AluSq SINE Alu 21 304 -9 2011 133 10 0 chr13 54607375 54607668 -47265501 + AluSx SINE Alu 1 296 -16 1586 180 60 0 chr13 54607958 54608241 -47264928 - AluSx SINE Alu -12 300 1 25 99 0 0 chr13 54608796 54608877 -47264292 + AT_rich Low_complexity Low_complexity 1 81 0 1333 247 71 21 chr13 54610445 54610866 -47262303 + MLT1C LTR MaLR 20 461 -6 995 80 13 0 chr13 54610869 54611019 -47262150 + (TCTA)n Simple_repeat Simple_repeat 1 152 0 304 247 12 0 chr13 54612050 54612135 -47261034 + (TA)n Simple_repeat Simple_repeat 2 87 0 2899 145 50 89 chr13 54612313 54612977 -47260192 - L1MA7 LINE L1 -6 6285 5648 350 346 134 0 chr13 54612980 54613182 -47259987 - L2 LINE L2 -602 2712 2484 2293 166 61 16 chr13 54613432 54613873 -47259296 - LOR1b LTR ERV1 0 461 1 37 0 0 0 chr13 54613965 54614002 -47259167 + AT_rich Low_complexity Low_complexity 1 37 0 603 257 45 50 chr13 54614188 54614454 -47258715 + L1M4b LINE L1 728 1213 -5646 2242 235 75 95 chr13 54614602 54615715 -47257454 - MER52A LTR ERV1 -3 1752 662 2880 89 3 0 chr13 54616040 54616432 -47256737 + L1P LINE L1 3962 4354 -1792 21 57 0 0 chr13 54616440 54616475 -47256694 + AT_rich Low_complexity Low_complexity 1 35 0 2836 9 0 0 chr13 54617502 54617817 -47255352 - AluYb8 SINE Alu -3 315 1 879 269 84 13 chr13 54618022 54618320 -47254849 - L1MC4 LINE L1 -375 7667 7349 330 263 8 8 chr13 54618437 54618555 -47254614 - L1MC4 LINE L1 -998 7044 6927 * 2740 171 9 27 chr13 54618548 54619075 -47254094 - L1MA6 LINE L1 -30 6270 5753 1262 259 94 9 chr13 54619078 54619503 -47253666 - L1MC4 LINE L1 -1119 6923 6463 325 325 38 50 chr13 54619811 54620032 -47253137 - MIR SINE MIR -7 255 38 261 208 26 13 chr13 54620086 54620163 -47253006 + MER116 DNA Mariner 2 79 -1 349 269 17 0 chr13 54621760 54621879 -47251290 - L1MC3 LINE L1 -650 7135 7015 611 274 50 6 chr13 54621895 54622074 -47251095 - Charlie1a DNA MER1_type -1268 187 1 442 251 44 111 chr13 54622097 54622188 -47250981 - L1MC5 LINE L1 -380 7581 7486 2095 170 24 3 chr13 54622188 54622570 -47250599 + MLT1B LTR MaLR 1 390 0 442 251 44 111 chr13 54622570 54622885 -47250284 - L1MC5 LINE L1 -475 7486 7202 21 0 0 0 chr13 54622890 54622911 -47250258 + AT_rich Low_complexity Low_complexity 1 21 0 298 334 61 22 chr13 54622990 54623159 -47250010 - MIR3 SINE MIR -62 146 8 347 40 20 0 chr13 54623758 54623808 -47249361 - MADE1 DNA Mariner 0 80 30 5729 132 163 12 chr13 54624495 54625605 -47247564 - MER52C LTR ERV1 0 1278 1 582 257 22 6 chr13 54626039 54626222 -47246947 - MER53 DNA DNA 0 189 4 4576 200 33 11 chr13 54626222 54627670 -47245499 - L1MB1 LINE L1 -15 6153 4673 2004 168 28 14 chr13 54627678 54628035 -47245134 - THE1B LTR MaLR -2 362 1 1544 87 9 0 chr13 54628035 54628253 -47244916 - THE1B-int LTR MaLR 0 1580 1361 678 160 62 21 chr13 54628353 54628497 -47244672 - THE1C LTR MaLR -225 150 1 * 2071 193 70 24 chr13 54628497 54629050 -47244119 + Charlie1 DNA MER1_type 2183 2761 0 525 246 72 61 chr13 54629057 54629350 -47243819 + L1MC5 LINE L1 7604 7899 -62 21 36 0 0 chr13 54629351 54629379 -47243790 + AT_rich Low_complexity Low_complexity 1 28 0 555 158 50 0 chr13 54630770 54630871 -47242298 - MLT1B LTR MaLR 0 390 285 1208 297 19 8 chr13 54631026 54631390 -47241779 - HERVL40 LTR ERVL -874 4656 4289 334 293 61 27 chr13 54631448 54631595 -47241574 - HERVL40 LTR ERVL -1337 4193 4042 30 0 0 0 chr13 54634357 54634387 -47238782 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr13 54635302 54635329 -47237840 + AT_rich Low_complexity Low_complexity 1 27 0 550 230 0 0 chr13 54635329 54635442 -47237727 - L1MA6 LINE L1 -360 5940 5828 1607 201 18 0 chr13 54635442 54635780 -47237389 + L1MA6 LINE L1 5952 6300 0 189 171 0 0 chr13 54636429 54636464 -47236705 + (CATA)n Simple_repeat Simple_repeat 1 35 0 27 29 0 0 chr13 54641255 54641289 -47231880 + AT_rich Low_complexity Low_complexity 1 34 0 458 263 72 51 chr13 54641637 54641873 -47231296 + L1MB7 LINE L1 1208 1448 -5411 317 197 30 0 chr13 54641888 54641954 -47231215 + L1MB7 LINE L1 1961 2028 -4931 2888 228 53 9 chr13 54642004 54642759 -47230410 + L1MB7 LINE L1 6199 6986 -9 1601 244 113 62 chr13 54644533 54645089 -47228080 - MER50 LTR ERV1 0 734 135 2270 103 3 0 chr13 54645089 54645401 -47227768 + AluSp SINE Alu 1 313 0 1601 244 113 62 chr13 54645401 54645534 -47227635 - MER50 LTR ERV1 -599 135 10 232 324 88 14 chr13 54645622 54645770 -47227399 - L2 LINE L2 -978 2336 2178 314 274 203 38 chr13 54645822 54646059 -47227110 + L2 LINE L2 1893 2168 -1146 401 302 101 11 chr13 54646059 54646238 -47226931 + L2 LINE L2 2629 2823 -491 1841 259 33 12 chr13 54646238 54646717 -47226452 - MER70B LTR ERVL 0 578 90 420 203 0 25 chr13 54646716 54646795 -47226374 - MER70A LTR ERVL -313 159 83 * 1140 293 28 33 chr13 54647585 54647984 -47225185 + LTR40a LTR ERVL 1 397 -122 216 182 0 0 chr13 54648139 54648183 -47224986 + (CATA)n Simple_repeat Simple_repeat 2 45 0 414 266 92 37 chr13 54649254 54649472 -47223697 + L1ME LINE L1 88 317 -5753 573 228 135 0 chr13 54649740 54649933 -47223236 + L1MC2 LINE L1 6117 6335 -9 4643 72 8 0 chr13 54650076 54650686 -47222483 - L1PA7 LINE L1 -141 6013 5399 2226 87 26 0 chr13 54650686 54650997 -47222172 + L1P LINE L1 3541 3859 -2287 533 303 55 42 chr13 54651107 54651417 -47221752 - MER110 LTR ERV1 -8 483 170 2496 60 0 0 chr13 54651986 54652284 -47220885 + AluY SINE Alu 1 298 -13 769 162 50 126 chr13 54653025 54653303 -47219866 - L1MC3 LINE L1 0 7785 7529 17555 152 16 9 chr13 54653428 54656590 -47216579 - L1P4 LINE L1 -686 5482 2304 300 313 161 21 chr13 54656916 54657108 -47216061 + MIR SINE MIR 44 262 0 280 259 53 61 chr13 54657818 54657949 -47215220 - MER89-int LTR ERV1 -162 6639 6510 2323 49 0 0 chr13 54659039 54659327 -47213842 + L1PA4 LINE L1 5867 6154 -1 575 171 0 0 chr13 54659501 54659606 -47213563 - MSTB LTR MaLR 0 428 324 678 163 35 21 chr13 54659611 54659752 -47213417 - MSTB LTR MaLR -283 143 1 265 313 40 47 chr13 54660731 54660881 -47212288 + MLT1I LTR MaLR 77 225 -184 3438 133 19 50 chr13 54661186 54661801 -47211368 + LTR9 LTR ERV1 17 612 0 228 231 0 0 chr13 54662291 54662343 -47210826 - L1MB7 LINE L1 -21 6163 6112 934 192 8 29 chr13 54662343 54662588 -47210581 + L1 LINE L1 2960 3199 -2947 * 4100 234 35 17 chr13 54662582 54662627 -47210542 + L1PA15-16 LINE L1 1886 1929 -4920 886 61 0 0 chr13 54662627 54662741 -47210428 - L1PA5 LINE L1 -8 6146 6033 4100 234 35 17 chr13 54662741 54663879 -47209290 + L1PA15-16 LINE L1 1929 3087 -3762 1958 289 59 21 chr13 54664135 54664935 -47208234 - HERVL40 LTR ERVL -989 4541 3712 434 202 43 26 chr13 54667074 54667197 -47205972 + MSTC LTR MaLR 7 109 -265 297 0 0 0 chr13 54667432 54667465 -47205704 + (TA)n Simple_repeat Simple_repeat 2 34 0 25 65 0 0 chr13 54667493 54667539 -47205630 + AT_rich Low_complexity Low_complexity 1 46 0 2696 243 64 66 chr13 54667542 54668524 -47204645 - L1M4 LINE L1 -800 5346 4363 3933 144 5 2 chr13 54668524 54669155 -47204014 - MER41B LTR ERV1 0 635 3 2696 243 64 66 chr13 54669155 54669241 -47203928 - L1M4 LINE L1 -1783 4363 4278 1203 67 43 0 chr13 54669241 54669405 -47203764 - L1PA4 LINE L1 0 6155 5985 2696 243 64 66 chr13 54669405 54669721 -47203448 - L1M4 LINE L1 -1868 4278 3964 599 216 14 0 chr13 54669730 54669869 -47203300 + L1M4 LINE L1 5141 5281 -865 317 315 94 34 chr13 54669981 54670216 -47202953 - L1MDa LINE L1 -4469 2071 1823 405 344 88 5 chr13 54671692 54671907 -47201262 + LTR16A LTR ERVL 218 450 0 24 0 0 0 chr13 54672018 54672042 -47201127 + AT_rich Low_complexity Low_complexity 1 24 0 576 266 54 0 chr13 54672199 54672383 -47200786 - LTR33 LTR ERVL 0 521 328 876 144 103 29 chr13 54672622 54672796 -47200373 - MER1B DNA MER1_type 0 339 153 412 163 71 0 chr13 54674836 54674934 -47198235 + L1MA9 LINE L1 6208 6312 0 320 293 224 17 chr13 54675232 54675406 -47197763 - MIR SINE MIR -16 246 37 228 220 22 33 chr13 54675589 54675680 -47197489 - L1MC4 LINE L1 -1339 6703 6614 233 223 40 34 chr13 54675792 54675967 -47197202 + (TATAA)n Simple_repeat Simple_repeat 3 178 0 180 0 0 0 chr13 54678837 54678857 -47194312 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr13 54679305 54679334 -47193835 + AT_rich Low_complexity Low_complexity 1 29 0 319 250 34 11 chr13 54679707 54679795 -47193374 + MLT1H LTR MaLR 460 549 0 24 0 0 0 chr13 54680056 54680080 -47193089 + AT_rich Low_complexity Low_complexity 1 24 0 2096 266 60 7 chr13 54680436 54681325 -47191844 + L1 LINE L1 1951 2880 -3266 972 237 18 0 chr13 54681323 54681551 -47191618 - L1P LINE L1 -1063 5083 4852 * 1142 203 15 11 chr13 54681554 54681815 -47191354 + L1 LINE L1 5044 5305 -841 31 44 0 0 chr13 54681956 54682001 -47191168 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr13 54682312 54682340 -47190829 + AT_rich Low_complexity Low_complexity 1 28 0 48 60 0 0 chr13 54682696 54682779 -47190390 + AT_rich Low_complexity Low_complexity 1 83 0 261 265 135 50 chr13 54684545 54684923 -47188246 + L1ME3A LINE L1 987 1396 -4988 387 0 0 0 chr13 54685026 54685069 -47188100 + (CA)n Simple_repeat Simple_repeat 1 43 0 249 325 24 0 chr13 54685121 54685244 -47187925 + L1ME3A LINE L1 4121 4246 -2136 2189 134 99 14 chr13 54685653 54686077 -47187092 + L1MA4 LINE L1 5834 6293 -7 647 292 85 39 chr13 54686134 54686939 -47186230 + L1ME3A LINE L1 5530 6395 -11 1431 270 61 81 chr13 54687616 54688552 -47184617 + L1ME LINE L1 57 973 -5097 423 0 0 0 chr13 54688589 54688636 -47184533 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 238 171 49 chr13 54688699 54688764 -47184405 + L1ME LINE L1 1118 1174 -4906 5763 108 39 4 chr13 54688764 54690225 -47182944 - L1PA13 LINE L1 -1 6162 4660 366 238 171 49 chr13 54690225 54690545 -47182624 + L1ME LINE L1 1174 1550 -4530 1781 150 11 0 chr13 54691092 54691372 -47181797 + AluSq SINE Alu 7 289 -24 731 217 18 18 chr13 54691879 54692045 -47181124 + FRAM SINE Alu 1 166 0 36 0 0 0 chr13 54692045 54692081 -47181088 + AT_rich Low_complexity Low_complexity 1 36 0 351 0 0 0 chr13 54694155 54694194 -47178975 + (CA)n Simple_repeat Simple_repeat 1 39 0 604 213 35 100 chr13 54694198 54694428 -47178741 - MER20 DNA MER1_type -4 215 1 249 351 7 13 chr13 54694442 54694596 -47178573 + (CATA)n Simple_repeat Simple_repeat 1 153 0 * 352 315 7 0 chr13 54694520 54694663 -47178506 + (CA)n Simple_repeat Simple_repeat 2 145 0 1219 187 64 12 chr13 54695354 54695521 -47177648 - AluJo SINE Alu -16 296 110 252 0 0 0 chr13 54695521 54695549 -47177620 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1219 187 64 12 chr13 54695549 54695632 -47177537 - AluJo SINE Alu -202 110 33 507 202 0 1 chr13 54695638 54695745 -47177424 - L1P5 LINE L1 -365 5786 5681 1469 207 47 3 chr13 54695945 54696244 -47176925 + AluJb SINE Alu 1 312 0 1653 225 10 5 chr13 54696279 54696670 -47176499 - L1MA6 LINE L1 -234 6066 5674 1618 155 24 14 chr13 54697016 54697313 -47175856 - L1MA6 LINE L1 -665 5635 5336 * 3452 204 22 7 chr13 54697307 54698073 -47175096 + L1MA6 LINE L1 4553 5330 -816 571 308 25 50 chr13 54699478 54699718 -47173451 + MIR SINE MIR 4 237 -25 1417 288 103 6 chr13 54701292 54701779 -47171390 + MLT1E LTR MaLR 60 593 0 396 342 68 45 chr13 54701793 54702103 -47171066 + L2 LINE L2 808 1124 -2190 432 158 0 0 chr13 54702103 54702179 -47170990 + L1MA9 LINE L1 6232 6307 -5 441 305 53 13 chr13 54702259 54702410 -47170759 + L2 LINE L2 2384 2540 -774 225 132 0 0 chr13 54703002 54703040 -47170129 + (CA)n Simple_repeat Simple_repeat 2 39 0 343 251 123 20 chr13 54703077 54703280 -47169889 - L1ME LINE L1 -5184 886 663 1739 330 75 27 chr13 54703316 54704098 -47169071 + HERVL40 LTR ERVL 1641 2460 -3070 3852 132 34 3 chr13 54704102 54704729 -47168440 + L1PA16 LINE L1 5521 6166 0 21 36 0 0 chr13 54704744 54704772 -47168397 + AT_rich Low_complexity Low_complexity 1 28 0 2820 284 33 40 chr13 54704861 54705214 -47167955 + HERVL40 LTR ERVL 2481 2835 -2695 3373 164 38 14 chr13 54705214 54705375 -47167794 + L1MA4 LINE L1 5621 5777 -523 342 0 0 0 chr13 54705375 54705413 -47167756 + (TG)n Simple_repeat Simple_repeat 2 39 0 3373 164 38 14 chr13 54705413 54705908 -47167261 + L1MA4 LINE L1 5777 6293 -7 2820 284 33 40 chr13 54705908 54706556 -47166613 + HERVL40 LTR ERVL 2835 3475 -2055 1167 285 111 19 chr13 54706597 54707067 -47166102 - MLT1E2 LTR MaLR 0 626 114 769 306 4 4 chr13 54707159 54707394 -47165775 + HERVL40 LTR ERVL 3728 3962 -1568 836 223 24 53 chr13 54707403 54707650 -47165519 + L1MB3 LINE L1 5944 6183 0 365 261 0 33 chr13 54709749 54709841 -47163328 + MLT1D LTR MaLR 1 89 -416 21 0 0 0 chr13 54709869 54709890 -47163279 + AT_rich Low_complexity Low_complexity 1 21 0 727 230 24 0 chr13 54709946 54710111 -47163058 - Charlie1 DNA MER1_type -241 2520 2352 434 365 35 20 chr13 54710140 54710546 -47162623 - LTR16B LTR ERVL -19 445 34 756 223 11 27 chr13 54710612 54710800 -47162369 - Charlie1 DNA MER1_type -428 2333 2149 26 30 0 0 chr13 54711331 54711364 -47161805 + AT_rich Low_complexity Low_complexity 1 33 0 229 270 60 0 chr13 54713301 54713401 -47159768 + L1MC4 LINE L1 6598 6703 -1339 209 119 24 0 chr13 54713460 54713502 -47159667 + (TA)n Simple_repeat Simple_repeat 1 43 0 2274 93 3 3 chr13 54713613 54713914 -47159255 - AluSp SINE Alu -10 303 3 330 297 227 5 chr13 54714329 54714514 -47158655 - MIR SINE MIR -32 230 5 2150 170 44 30 chr13 54714845 54715387 -47157782 - MLT2A2 LTR ERVL 0 554 1 25 0 0 0 chr13 54716581 54716606 -47156563 + AT_rich Low_complexity Low_complexity 1 25 0 873 185 13 7 chr13 54716609 54716760 -47156409 + MLT1A1 LTR MaLR 1 152 -213 435 19 0 0 chr13 54717523 54717575 -47155594 + (TA)n Simple_repeat Simple_repeat 2 53 0 32 26 0 0 chr13 54718813 54718852 -47154317 + AT_rich Low_complexity Low_complexity 1 39 0 2662 102 19 61 chr13 54719487 54719763 -47153406 - MLT2A1 LTR ERVL 0 444 193 2001 133 7 0 chr13 54719763 54720049 -47153120 - AluSx SINE Alu -24 288 1 2662 102 19 61 chr13 54720049 54720233 -47152936 - MLT2A1 LTR ERVL -251 193 3 384 22 0 0 chr13 54722028 54722073 -47151096 + (TA)n Simple_repeat Simple_repeat 2 46 0 824 214 4 15 chr13 54723201 54723438 -47149731 + MLT1C LTR MaLR 190 462 -5 302 250 105 0 chr13 54724500 54724576 -47148593 + MLT1H LTR MaLR 91 174 -375 366 164 33 0 chr13 54724609 54724670 -47148499 - THE1B LTR MaLR 0 375 313 1445 132 72 23 chr13 54724878 54725143 -47148026 - THE1B LTR MaLR -86 278 1 3416 171 11 29 chr13 54725190 54725806 -47147363 - MER52A LTR ERV1 0 1755 1151 2709 213 209 38 chr13 54725813 54726601 -47146568 - MER52A LTR ERV1 -832 923 1 421 250 111 14 chr13 54726734 54726878 -47146291 + MLT1H LTR MaLR 392 549 0 198 0 0 0 chr13 54726908 54726930 -47146239 + (CA)n Simple_repeat Simple_repeat 2 23 0 381 188 47 0 chr13 54729086 54729171 -47143998 + MLT1A2 LTR MaLR 1 89 -276 383 93 0 0 chr13 54729171 54729225 -47143944 - L1PA7 LINE L1 -92 6062 6009 664 58 0 0 chr13 54729225 54729307 -47143862 + L1PA8 LINE L1 6086 6172 0 387 0 0 0 chr13 54729588 54729631 -47143538 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 436 126 105 32 chr13 54729675 54729770 -47143399 - FRAM SINE Alu -31 145 44 220 274 0 0 chr13 54730489 54730540 -47142629 - L2 LINE L2 -1 3312 3262 1698 196 72 15 chr13 54730933 54731392 -47141777 + LTR22B LTR ERVK 1 485 -7 798 200 46 129 chr13 54732211 54732536 -47140633 + MLT1A2 LTR MaLR 75 372 -2 180 111 0 0 chr13 54734177 54734204 -47138965 + (CA)n Simple_repeat Simple_repeat 2 28 0 911 324 83 40 chr13 54736234 54736977 -47136192 + L2 LINE L2 2269 3042 -271 4508 64 2 0 chr13 54737082 54737660 -47135509 - L1PA5 LINE L1 -5 6149 5571 2547 48 13 0 chr13 54737660 54738062 -47135107 + L1PA5 LINE L1 5177 5582 -573 195 262 199 28 chr13 54739302 54739443 -47133726 - MIR SINE MIR -40 222 58 316 239 9 6 chr13 54739721 54739834 -47133335 - MER5A DNA MER1_type 0 189 8 35 41 0 0 chr13 54740174 54740223 -47132946 + AT_rich Low_complexity Low_complexity 1 49 0 28 61 0 0 chr13 54742032 54742081 -47131088 + AT_rich Low_complexity Low_complexity 1 49 0 1547 102 43 8 chr13 54742218 54742473 -47130696 + L1MA3 LINE L1 6042 6305 0 21 89 0 0 chr13 54742567 54742623 -47130546 + AT_rich Low_complexity Low_complexity 1 56 0 640 136 38 82 chr13 54743515 54743699 -47129470 + L1M1 LINE L1 3383 3558 -4007 2347 201 32 21 chr13 54744165 54744697 -47128472 - L1PA16 LINE L1 -1 6165 5628 1452 209 37 0 chr13 54744751 54745047 -47128122 - AluJo SINE Alu -5 307 1 1159 200 118 96 chr13 54745380 54745914 -47127255 + LTR55 LTR ERV 1 546 -2 2604 93 35 13 chr13 54746491 54746887 -47126282 + MLT2A1 LTR ERVL 1 405 -39 251 247 78 0 chr13 54746898 54746975 -47126194 - L1MC4 LINE L1 -1348 6694 6612 358 89 0 18 chr13 54746977 54747033 -47126136 + MLT2A2 LTR ERVL 399 453 0 200 271 43 14 chr13 54747514 54747584 -47125585 + CT-rich Low_complexity Low_complexity 3 74 0 247 243 56 28 chr13 54747913 54748020 -47125149 - HAL1b LINE L1 -419 929 820 50 31 0 0 chr13 54748215 54748279 -47124890 + AT_rich Low_complexity Low_complexity 1 64 0 679 207 0 30 chr13 54748956 54749091 -47124078 + FLAM_A SINE Alu 1 131 -2 1462 240 6 16 chr13 54749390 54749756 -47123413 - MLT1A1 LTR MaLR -2 363 2 286 268 362 0 chr13 54749843 54749970 -47123199 - MER5A DNA MER1_type -1 188 16 1177 259 118 53 chr13 54750535 54751008 -47122161 - L1MEc LINE L1 -3418 2797 2356 1409 180 50 32 chr13 54751008 54751291 -47121878 - AluJb SINE Alu -24 288 1 1177 259 118 53 chr13 54751291 54751775 -47121394 - L1MEc LINE L1 -3859 2356 1808 1098 255 108 36 chr13 54751793 54752683 -47120486 - L1MEc LINE L1 -4620 1776 823 2290 76 3 16 chr13 54752896 54753199 -47119970 - AluY SINE Alu -12 299 1 466 311 120 9 chr13 54753230 54753564 -47119605 - L1MEc LINE L1 -5992 404 34 1865 80 4 0 chr13 54753815 54754066 -47119103 + L1PA5 LINE L1 5903 6154 0 187 292 67 100 chr13 54754177 54754297 -47118872 + MER5A DNA MER1_type 59 174 -15 194 254 15 0 chr13 54754403 54754470 -47118699 + (CATA)n Simple_repeat Simple_repeat 2 69 0 22 0 0 0 chr13 54754976 54754998 -47118171 + AT_rich Low_complexity Low_complexity 1 22 0 1500 182 10 29 chr13 54755139 54755446 -47117723 + AluJb SINE Alu 1 301 -11 261 0 0 0 chr13 54755463 54755492 -47117677 + (A)n Simple_repeat Simple_repeat 1 29 0 464 220 126 44 chr13 54756523 54756682 -47116487 - MLT1E3 LTR MaLR -452 172 1 2003 140 7 0 chr13 54757595 54757888 -47115281 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr13 54761921 54761942 -47111227 + AT_rich Low_complexity Low_complexity 1 21 0 1132 171 0 10 chr13 54761943 54762136 -47111033 - AluJb SINE Alu -22 290 100 27 49 0 0 chr13 54762204 54762245 -47110924 + AT_rich Low_complexity Low_complexity 1 41 0 21 57 0 0 chr13 54762387 54762422 -47110747 + AT_rich Low_complexity Low_complexity 1 35 0 764 166 51 0 chr13 54762427 54762584 -47110585 + MER67C LTR ERV1 540 704 -6 21 0 0 0 chr13 54762655 54762676 -47110493 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr13 54763199 54763234 -47109935 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chr13 54763291 54763322 -47109847 + AT_rich Low_complexity Low_complexity 1 31 0 510 232 25 145 chr13 54763674 54763729 -47109440 - MER110 LTR ERV1 -160 331 271 1845 225 38 70 chr13 54763729 54764361 -47108808 - LTR9 LTR ERV1 0 612 1 510 232 25 145 chr13 54764361 54764464 -47108705 - MER110 LTR ERV1 -220 271 217 1347 194 136 13 chr13 54764464 54764774 -47108395 + MER7A DNA MER2_type 1 346 0 510 232 25 145 chr13 54764774 54764890 -47108279 - MER110 LTR ERV1 -274 217 89 239 368 116 0 chr13 54765337 54765432 -47107737 - MER91A DNA MER1_type -13 183 78 200 304 0 0 chr13 54765870 54765926 -47107243 - L2 LINE L2 -3 3269 3214 2084 130 0 0 chr13 54765974 54766267 -47106902 + AluSx SINE Alu 1 293 -19 1622 156 83 42 chr13 54766845 54767205 -47105964 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr13 54767531 54767559 -47105610 + AT_rich Low_complexity Low_complexity 1 28 0 2039 112 42 3 chr13 54767917 54768204 -47104965 + AluSx SINE Alu 5 302 -10 2114 124 0 0 chr13 54769050 54769349 -47103820 - AluSx SINE Alu -13 299 1 613 228 83 28 chr13 54769871 54770051 -47103118 + L1MDa LINE L1 208 397 -6143 2468 207 100 25 chr13 54770709 54771390 -47101779 - MER44D DNA MER2_type -1 604 1 3364 262 91 29 chr13 54771533 54772454 -47100715 + L1MDa LINE L1 202 1065 -5475 2180 116 0 3 chr13 54772454 54772764 -47100405 + AluSc SINE Alu 1 309 0 3364 262 91 29 chr13 54772764 54773164 -47100005 + L1MDa LINE L1 1065 1439 -5101 1348 150 72 72 chr13 54773164 54773297 -47099872 + AluJb SINE Alu 1 133 -179 1984 123 0 7 chr13 54773297 54773617 -47099552 + AluSg SINE Alu 1 310 0 1348 150 72 72 chr13 54773617 54773776 -47099393 + AluJb SINE Alu 132 293 -19 3364 262 91 29 chr13 54773776 54774052 -47099117 + L1MDa LINE L1 1439 1697 -4843 1917 118 14 3 chr13 54774052 54774339 -47098830 + AluSg SINE Alu 21 310 0 3364 262 91 29 chr13 54774339 54776197 -47096972 + L1MDa LINE L1 1697 4032 -2508 1896 159 26 32 chr13 54776197 54776574 -47096595 - THE1C LTR MaLR 0 375 1 3364 262 91 29 chr13 54776574 54776691 -47096478 + L1MDa LINE L1 4032 4140 -2400 507 270 45 0 chr13 54776702 54776902 -47096267 - L1MEc LINE L1 -3515 2700 2492 * 1016 325 43 25 chr13 54776896 54777382 -47095787 - L1MEc LINE L1 -5794 602 108 183 100 0 0 chr13 54777417 54777447 -47095722 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 24 0 0 0 chr13 54777620 54777644 -47095525 + AT_rich Low_complexity Low_complexity 1 24 0 363 275 109 52 chr13 54778421 54778650 -47094519 - MIR SINE MIR -1 261 20 447 19 0 0 chr13 54779153 54779205 -47093964 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 1912 127 4 7 chr13 54779229 54779505 -47093664 - AluSx SINE Alu -33 279 5 2054 143 36 41 chr13 54779945 54780310 -47092859 - THE1B LTR MaLR -1 363 1 239 32 0 0 chr13 54780442 54780473 -47092696 - HY3 scRNA scRNA -5 96 66 481 239 117 6 chr13 54780665 54780821 -47092348 + MER67D LTR ERV1 31 198 -361 987 198 42 23 chr13 54781084 54781301 -47091868 - THE1C LTR MaLR 0 375 155 2310 67 3 0 chr13 54781301 54781598 -47091571 - L1PA8 LINE L1 -440 5732 5435 3101 85 9 2 chr13 54781598 54782019 -47091150 + L1PA8 LINE L1 5744 6171 -1 915 138 62 12 chr13 54782031 54782191 -47090978 - THE1C LTR MaLR -207 168 1 * 2895 163 8 6 chr13 54782191 54782670 -47090499 - MER41B LTR ERV1 -12 623 144 1152 207 26 48 chr13 54782662 54782932 -47090237 - MER41C LTR ERV1 -287 267 4 * 1635 193 20 7 chr13 54783517 54783871 -47089298 - AluJo SINE Alu 0 358 1 26 30 0 0 chr13 54783871 54783904 -47089265 + AT_rich Low_complexity Low_complexity 1 33 0 2768 182 133 123 chr13 54785006 54785560 -47087609 - L1MC3 LINE L1 -32 7753 7070 340 227 6 37 chr13 54785560 54785675 -47087494 - MLT1F1 LTR MaLR -381 168 13 2768 182 133 123 chr13 54785675 54786045 -47087124 - L1MC3 LINE L1 -715 7070 6705 496 277 80 144 chr13 54786819 54787368 -47085801 - L2 LINE L2 -429 2885 2372 341 361 53 70 chr13 54787371 54787615 -47085554 - L2 LINE L2 -28 3244 3005 432 266 52 47 chr13 54789236 54789428 -47083741 - L1M4 LINE L1 -1924 4222 4030 537 249 118 13 chr13 54789573 54789810 -47083359 + L1M4 LINE L1 3247 3508 -2638 4245 216 30 10 chr13 54789830 54790883 -47082286 + L1MA9 LINE L1 5204 6279 -33 1283 265 28 42 chr13 54790882 54791339 -47081830 + L1M4 LINE L1 3688 4138 -2008 * 2206 114 7 0 chr13 54791428 54791726 -47081443 + AluSc SINE Alu 1 300 -9 1733 159 13 32 chr13 54791749 54792064 -47081105 + AluJb SINE Alu 3 311 -1 324 190 34 80 chr13 54792073 54792210 -47080959 - L1M2 LINE L1 -790 5452 5328 728 109 0 70 chr13 54792210 54792338 -47080831 - L1PA7 LINE L1 0 6154 6036 420 262 129 10 chr13 54792420 54792622 -47080547 + L1MD2 LINE L1 5672 5897 -462 923 160 80 0 chr13 54792635 54792823 -47080346 + L1MD3 LINE L1 7779 7981 -14 451 348 43 10 chr13 54793742 54793949 -47079220 - MIR SINE MIR -2 260 47 39 74 0 0 chr13 54794071 54794152 -47079017 + AT_rich Low_complexity Low_complexity 1 81 0 1514 221 47 54 chr13 54794711 54795177 -47077992 - MER31B LTR ERV1 -3 463 1 2038 130 3 22 chr13 54795299 54795614 -47077555 - AluSx SINE Alu -1 311 3 2821 157 35 40 chr13 54796310 54796888 -47076281 - MER6A DNA MER2_type -30 575 1 1995 277 66 34 chr13 54796889 54797057 -47076112 - L1MCc LINE L1 -3191 3750 3589 1883 169 22 30 chr13 54797057 54797424 -47075745 + THE1B LTR MaLR 1 364 0 1995 277 66 34 chr13 54797424 54798871 -47074298 - L1MCc LINE L1 -3352 3589 1788 2185 194 26 2 chr13 54798871 54799289 -47073880 + MSTA LTR MaLR 1 428 0 1995 277 66 34 chr13 54799289 54800294 -47072875 - L1MCc LINE L1 -5153 1788 817 1088 276 97 52 chr13 54800457 54800696 -47072473 - LTR40a LTR ERVL 0 519 292 1681 171 98 59 chr13 54800696 54801105 -47072064 - MSTB LTR MaLR 0 426 2 1088 276 97 52 chr13 54801105 54801267 -47071902 - LTR40a LTR ERVL -227 292 89 2288 90 3 0 chr13 54801267 54801568 -47071601 + AluSp SINE Alu 3 304 -9 1088 276 97 52 chr13 54801568 54801662 -47071507 - LTR40a LTR ERVL -430 89 1 28618 127 9 71 chr13 54803004 54805458 -47067711 + L1PA7 LINE L1 12 2616 -3538 600 88 0 0 chr13 54805458 54805538 -47067631 + U6 snRNA snRNA 3 82 -25 28618 127 9 71 chr13 54805538 54809561 -47063608 + L1PA7 LINE L1 2616 6154 0 208 341 47 35 chr13 54810298 54810383 -47062786 + L2 LINE L2 3150 3235 -37 219 69 0 0 chr13 54811402 54811431 -47061738 + (CA)n Simple_repeat Simple_repeat 2 30 0 221 143 0 20 chr13 54811451 54811500 -47061669 + (TA)n Simple_repeat Simple_repeat 1 48 0 237 178 0 0 chr13 54811524 54811569 -47061600 + (TA)n Simple_repeat Simple_repeat 1 45 0 28 29 0 0 chr13 54812444 54812479 -47060690 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 54812538 54812567 -47060602 + AT_rich Low_complexity Low_complexity 1 29 0 5208 140 25 0 chr13 54812574 54813488 -47059681 - L1PA15 LINE L1 -3 6162 5232 2002 40 16 0 chr13 54815861 54816110 -47057059 + L1PA4 LINE L1 5903 6155 0 29 28 0 0 chr13 54816596 54816632 -47056537 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 54816768 54816796 -47056373 + AT_rich Low_complexity Low_complexity 1 28 0 252 283 101 31 chr13 54817104 54817263 -47055906 - L2 LINE L2 -34 3279 3110 644 361 55 24 chr13 54817358 54817737 -47055432 - L2 LINE L2 -359 2955 2565 31 44 0 0 chr13 54818491 54818536 -47054633 + AT_rich Low_complexity Low_complexity 1 45 0 237 252 75 28 chr13 54818901 54819008 -47054161 + L1M4 LINE L1 3722 3833 -2313 321 277 69 79 chr13 54819138 54819340 -47053829 + L2 LINE L2 3113 3312 -1 25 65 0 0 chr13 54819765 54819811 -47053358 + AT_rich Low_complexity Low_complexity 1 46 0 191 100 0 50 chr13 54820901 54820941 -47052228 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 222 37 0 0 chr13 54822107 54822134 -47051035 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1328 197 7 63 chr13 54822137 54822436 -47050733 - AluJb SINE Alu -30 282 1 22 80 0 0 chr13 54822445 54822495 -47050674 + AT_rich Low_complexity Low_complexity 1 50 0 233 29 29 0 chr13 54822804 54822838 -47050331 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1886 144 0 0 chr13 54822838 54823115 -47050054 - AluSg SINE Alu -33 277 1 1947 151 0 25 chr13 54823258 54823577 -47049592 - AluSx SINE Alu -1 311 1 318 128 0 0 chr13 54823985 54824032 -47049137 - MLT1J1 LTR MaLR -2 444 398 2240 113 0 0 chr13 54824193 54824494 -47048675 + AluSq SINE Alu 1 301 -12 254 250 36 0 chr13 54824521 54824577 -47048592 - MLT1J2 LTR MaLR -280 170 113 322 264 94 89 chr13 54824632 54825037 -47048132 - LTR52 LTR ERVL -3 418 12 1688 93 126 7 chr13 54825037 54825306 -47047863 - AluSg1 SINE Alu -8 301 1 2030 122 3 13 chr13 54825316 54825619 -47047550 - AluSc SINE Alu -9 300 1 389 268 68 21 chr13 54825920 54826110 -47047059 + L1M4 LINE L1 4411 4609 -1537 280 286 48 75 chr13 54826718 54826865 -47046304 + MIR SINE MIR 31 173 -89 1741 97 4 26 chr13 54827031 54827299 -47045870 - L1PA14 LINE L1 -4 6157 5896 361 242 91 0 chr13 54827426 54827525 -47045644 - MIR SINE MIR -30 232 125 213 237 17 0 chr13 54828097 54828156 -47045013 + T-rich Low_complexity Low_complexity 1 60 0 298 276 9 35 chr13 54828439 54828555 -47044614 + A-rich Low_complexity Low_complexity 5 117 0 23 33 0 0 chr13 54829713 54829743 -47043426 + AT_rich Low_complexity Low_complexity 1 30 0 290 33 49 33 chr13 54829768 54829829 -47043340 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 389 292 18 9 chr13 54829949 54830062 -47043107 + HsTC2 DNA Tc2 25 138 -1760 1231 263 106 24 chr13 54830071 54830646 -47042523 + HsTC2 DNA Tc2 1274 1895 -3 884 181 6 22 chr13 54830821 54831003 -47042166 + L1MA9 LINE L1 6045 6223 -89 1063 178 9 23 chr13 54831006 54831225 -47041944 + AluJb SINE Alu 94 309 -3 281 271 94 12 chr13 54831476 54831561 -47041608 - L2 LINE L2 -8 3264 3173 200 205 0 0 chr13 54832024 54832063 -47041106 + (TATG)n Simple_repeat Simple_repeat 2 40 0 275 278 11 0 chr13 54832104 54832194 -47040975 + L1ME LINE L1 5427 5517 -645 246 62 0 0 chr13 54834785 54834817 -47038352 + (TG)n Simple_repeat Simple_repeat 2 33 0 198 191 0 0 chr13 54834924 54834971 -47038198 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 263 186 48 28 chr13 54834977 54835122 -47038047 + (TA)n Simple_repeat Simple_repeat 2 149 0 1530 179 107 26 chr13 54835544 54835836 -47037333 + THE1C LTR MaLR 1 327 -48 180 0 0 0 chr13 54835836 54835856 -47037313 + (TA)n Simple_repeat Simple_repeat 1 20 0 1530 179 107 26 chr13 54835856 54835910 -47037259 + THE1C LTR MaLR 327 375 0 8664 143 76 12 chr13 54835910 54837395 -47035774 + THE1C-int LTR MaLR 1 1580 0 1616 165 88 20 chr13 54837395 54837746 -47035423 + THE1C LTR MaLR 1 375 0 30 59 0 0 chr13 54838388 54838439 -47034730 + AT_rich Low_complexity Low_complexity 1 51 0 2357 67 0 14 chr13 54840341 54840638 -47032531 - AluY SINE Alu -18 293 1 23 0 0 0 chr13 54840831 54840854 -47032315 + AT_rich Low_complexity Low_complexity 1 23 0 41 21 0 0 chr13 54842137 54842185 -47030984 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr13 54842563 54842591 -47030578 + AT_rich Low_complexity Low_complexity 1 28 0 1249 156 92 34 chr13 54843293 54843588 -47029581 + MER46B DNA MER2_type 50 236 0 7799 55 12 0 chr13 54843866 54845613 -47027556 + L1PA5 LINE L1 4395 6152 -2 649 257 29 24 chr13 54845654 54845864 -47027305 + L1M4 LINE L1 2197 2407 -3739 836 118 0 0 chr13 54845877 54845996 -47027173 + AluSq/x SINE Alu 1 119 -194 598 307 10 42 chr13 54845996 54846302 -47026867 + L1M4 LINE L1 2529 2824 -3322 297 75 0 0 chr13 54846345 54846385 -47026784 + (TG)n Simple_repeat Simple_repeat 1 40 0 410 248 181 0 chr13 54846754 54846859 -47026310 + FLAM_C SINE Alu 2 125 -8 22 56 0 0 chr13 54847334 54847370 -47025799 + AT_rich Low_complexity Low_complexity 1 36 0 25 83 0 0 chr13 54847552 54847612 -47025557 + AT_rich Low_complexity Low_complexity 1 60 0 3135 113 11 2 chr13 54847662 54848105 -47025064 - MLT2A2 LTR ERVL -6 447 1 281 365 9 9 chr13 54848255 54848370 -47024799 + L2 LINE L2 3183 3297 -16 2698 7 0 0 chr13 54848678 54848973 -47024196 - AluYa5 SINE Alu -16 295 1 208 0 62 0 chr13 54849327 54849359 -47023810 + (TG)n Simple_repeat Simple_repeat 1 34 0 254 279 88 27 chr13 54849787 54849934 -47023235 + L1ME4a LINE L1 5742 5897 -224 268 259 91 14 chr13 54849953 54850096 -47023073 + L1ME4a LINE L1 5934 6087 -34 5039 119 109 62 chr13 54850296 54851756 -47021413 - pTR5 LTR ERV1 0 2438 743 434 88 15 0 chr13 54852240 54852308 -47020861 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 330 326 90 26 chr13 54853341 54853728 -47019441 + L1ME4a LINE L1 5497 5908 -213 22 0 0 0 chr13 54853735 54853757 -47019412 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 54853825 54853867 -47019302 + AT_rich Low_complexity Low_complexity 1 42 0 336 253 26 77 chr13 54853981 54854175 -47018994 + L1ME3A LINE L1 4431 4614 -1532 534 284 72 39 chr13 54854226 54854533 -47018636 + L1ME3A LINE L1 4619 4947 -1199 2243 168 48 12 chr13 54854533 54854716 -47018453 + MSTB1 LTR MaLR 1 176 -256 207 0 0 0 chr13 54854716 54854739 -47018430 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2243 168 48 12 chr13 54854739 54854972 -47018197 + MSTB1 LTR MaLR 176 432 0 534 284 72 39 chr13 54854972 54855125 -47018044 + L1ME3A LINE L1 4947 5094 -1052 905 240 84 23 chr13 54855299 54855724 -47017445 + L1ME3A LINE L1 5313 5769 -401 388 208 34 45 chr13 54855782 54855960 -47017209 + (TA)n Simple_repeat Simple_repeat 2 177 0 496 276 199 10 chr13 54855972 54856273 -47016896 + L1ME3A LINE L1 5807 6164 -6 660 183 20 13 chr13 54856623 54856776 -47016393 + L1MA10 LINE L1 6169 6322 -12 423 218 45 45 chr13 54856787 54856897 -47016272 - L2 LINE L2 -14 3299 3190 512 286 49 16 chr13 54856960 54857145 -47016024 + MLT1J LTR MaLR 10 200 -311 246 253 81 0 chr13 54857318 54857405 -47015764 + MLT1J LTR MaLR 418 511 0 21 0 0 0 chr13 54858301 54858322 -47014847 + AT_rich Low_complexity Low_complexity 1 21 0 188 194 0 0 chr13 54858708 54858739 -47014430 + MIR SINE MIR 120 150 -58 1201 201 0 85 chr13 54859070 54859389 -47013780 + AluJb SINE Alu 1 292 -10 382 282 24 124 chr13 54859697 54859988 -47013181 - MER110 LTR ERV1 -181 310 49 286 153 41 41 chr13 54860641 54860739 -47012430 + (TTAA)n Simple_repeat Simple_repeat 4 101 0 469 303 45 54 chr13 54860978 54861292 -47011877 + HAL1b LINE L1 365 675 -673 2135 102 19 22 chr13 54861295 54861609 -47011560 + AluSq SINE Alu 1 313 0 236 141 54 54 chr13 54861746 54861838 -47011331 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 24 85 0 0 chr13 54861975 54862034 -47011135 + AT_rich Low_complexity Low_complexity 1 59 0 218 214 40 40 chr13 54862150 54862276 -47010893 + (CTATA)n Simple_repeat Simple_repeat 4 129 0 7011 166 28 6 chr13 54862281 54863547 -47009622 - HSMAR2 DNA Mariner -2 1300 7 24 32 0 0 chr13 54863975 54864006 -47009163 + AT_rich Low_complexity Low_complexity 1 31 0 281 300 143 14 chr13 54864133 54864273 -47008896 + MLT1J1 LTR MaLR 1 158 -288 23 0 0 0 chr13 54864342 54864365 -47008804 + AT_rich Low_complexity Low_complexity 1 23 0 1009 158 10 19 chr13 54864405 54864614 -47008555 - L1MA7 LINE L1 0 6291 6085 2036 206 6 30 chr13 54864614 54865089 -47008080 + L1MA7 LINE L1 5679 6142 -149 398 243 39 10 chr13 54866441 54866544 -47006625 + MIR SINE MIR 99 204 -58 252 214 0 0 chr13 54867071 54867113 -47006056 - Tigger2 DNA MER2_type -2676 42 1 796 269 60 20 chr13 54867117 54867418 -47005751 + L1MA9 LINE L1 5958 6270 -42 30 69 0 0 chr13 54867430 54867488 -47005681 + AT_rich Low_complexity Low_complexity 1 58 0 1484 172 20 43 chr13 54867755 54868058 -47005111 + AluJo SINE Alu 1 296 -16 337 347 24 24 chr13 54868558 54868682 -47004487 + L2 LINE L2 2898 3021 -292 1647 171 58 32 chr13 54869477 54869857 -47003312 - MLT1B LTR MaLR 0 390 1 1226 211 62 43 chr13 54870483 54870920 -47002249 + LTR37B LTR ERV1 6 450 -18 210 350 100 11 chr13 54871037 54871217 -47001952 + L2 LINE L2 3110 3305 -8 318 300 114 57 chr13 54922628 54922855 -46950314 - MIR SINE MIR -7 255 16 28 102 0 0 chr13 54923638 54923736 -46949433 + AT_rich Low_complexity Low_complexity 1 98 0 365 306 127 19 chr13 54924133 54924290 -46948879 - MIR SINE MIR -84 178 5 1213 242 22 36 chr13 54924627 54924987 -46948182 + MLT1A1 LTR MaLR 11 365 0 229 53 0 0 chr13 54925029 54925067 -46948102 - Alu SINE Alu 0 302 265 2716 226 14 0 chr13 54925068 54925704 -46947465 + L1 LINE L1 4154 4798 -1348 1027 119 18 11 chr13 54925706 54925924 -46947245 + AluSc SINE Alu 4 255 -54 301 74 0 0 chr13 54925937 54925991 -46947178 + L1M4 LINE L1 4783 4836 -1310 3509 164 13 10 chr13 54925994 54926978 -46946191 + L1P5 LINE L1 4808 5791 -360 301 244 11 33 chr13 54926983 54927073 -46946096 + L1MC4 LINE L1 6614 6701 -1341 527 157 0 0 chr13 54927092 54927175 -46945994 - L1PB1 LINE L1 -284 5867 5785 2144 187 19 3 chr13 54927598 54928110 -46945059 + LTR69 LTR ERVL 8 588 0 213 282 10 39 chr13 54928196 54928299 -46944870 + A-rich Low_complexity Low_complexity 5 104 0 2207 85 0 26 chr13 54928994 54929299 -46943870 + AluY SINE Alu 1 297 -14 1807 225 116 50 chr13 54930398 54931078 -46942091 - MER50 LTR ERV1 0 734 10 28 0 0 0 chr13 54931497 54931525 -46941644 + AT_rich Low_complexity Low_complexity 1 28 0 400 196 0 23 chr13 54932012 54932113 -46941056 - L1PB1 LINE L1 -398 5786 5694 3470 197 101 63 chr13 54932121 54932298 -46940871 - L1MA9 LINE L1 -34 6278 6109 1454 173 28 0 chr13 54932298 54932547 -46940622 - AluSq SINE Alu -57 256 1 3470 197 101 63 chr13 54932547 54933927 -46939242 - L1MA9 LINE L1 -203 6109 4659 3240 206 45 8 chr13 54933916 54934011 -46939158 + L1 LINE L1 3804 3894 -2252 * 3920 40 0 0 chr13 54934011 54934489 -46938680 - L1PA4 LINE L1 0 6155 5678 3240 206 45 8 chr13 54934489 54935194 -46937975 + L1 LINE L1 3894 4634 -1512 270 0 0 0 chr13 54936988 54937018 -46936151 + (CAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr13 54937180 54937202 -46935967 + AT_rich Low_complexity Low_complexity 1 22 0 207 259 0 0 chr13 54937283 54937337 -46935832 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 1426 154 52 154 chr13 54938130 54938610 -46934559 + MSTB1 LTR MaLR 2 432 0 563 279 0 13 chr13 54941018 54941172 -46931997 + MER97c DNA MER1_type? 65 216 -874 265 250 0 38 chr13 54941311 54941391 -46931778 + MER97b DNA MER1_type? 140 216 -837 25 0 0 0 chr13 54941572 54941597 -46931572 + AT_rich Low_complexity Low_complexity 1 25 0 824 225 9 9 chr13 54941836 54942049 -46931120 - L1MD2 LINE L1 -4 6355 6143 1356 196 101 24 chr13 54942417 54942754 -46930415 - L1MD2 LINE L1 -206 6153 5791 3380 130 2 8 chr13 54942888 54943402 -46929767 + MER9 LTR ERVK 1 511 0 613 338 56 4 chr13 54943412 54943646 -46929523 - MIR SINE MIR 0 262 17 197 243 14 95 chr13 54943740 54943814 -46929355 - L2 LINE L2 -4 3268 3201 230 350 10 10 chr13 54944796 54944893 -46928276 - Charlie8 DNA MER1_type -2148 269 173 23 33 0 0 chr13 54945287 54945317 -46927852 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr13 54945466 54945489 -46927680 + AT_rich Low_complexity Low_complexity 1 23 0 23 97 0 0 chr13 54945731 54945803 -46927366 + AT_rich Low_complexity Low_complexity 1 72 0 230 183 54 21 chr13 54946315 54946408 -46926761 + (TA)n Simple_repeat Simple_repeat 2 97 0 2317 146 6 0 chr13 54947525 54947887 -46925282 + THE1B LTR MaLR 1 364 0 10407 117 9 27 chr13 54947888 54949495 -46923674 + THE1B-int LTR MaLR 2 1580 0 2506 135 0 0 chr13 54949495 54949859 -46923310 + THE1B LTR MaLR 1 364 0 1734 275 90 36 chr13 54950288 54950699 -46922470 - L1M4 LINE L1 -1300 5240 4853 1276 187 75 19 chr13 54950699 54950998 -46922171 - AluJb SINE Alu 0 314 1 1734 275 90 36 chr13 54950998 54951593 -46921576 - L1M4 LINE L1 -1687 4853 4178 908 268 73 39 chr13 54951592 54952507 -46920662 - L1MDa LINE L1 -3644 2896 1947 * 1993 188 40 0 chr13 54952507 54952884 -46920285 - MSTD LTR MaLR 0 396 5 908 268 73 39 chr13 54952884 54952943 -46920226 - L1MDa LINE L1 -4593 1947 1892 212 273 118 27 chr13 54953889 54953999 -46919170 - MIR SINE MIR -85 177 58 1210 229 119 15 chr13 54954097 54954434 -46918735 + L1MD1 LINE L1 1048 1419 -6146 * 1838 255 50 81 chr13 54954428 54955494 -46917675 + L1MD1 LINE L1 4707 5739 -1826 4006 211 30 15 chr13 54955501 54956647 -46916522 + L1MB4 LINE L1 5001 6163 -17 3882 226 52 41 chr13 54956660 54958493 -46914676 + L1MD1 LINE L1 5735 7587 -74 21 36 0 0 chr13 54958527 54958555 -46914614 + AT_rich Low_complexity Low_complexity 1 28 0 1575 169 12 35 chr13 54959509 54959828 -46913341 - AluJb SINE Alu 0 312 1 243 146 0 0 chr13 54960566 54960607 -46912562 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 188 402 35 0 chr13 54961150 54961237 -46911932 + L3 LINE CR1 572 661 -916 465 19 0 0 chr13 54962001 54962055 -46911114 + (CA)n Simple_repeat Simple_repeat 2 55 0 282 274 65 52 chr13 54962395 54962569 -46910600 + L1MC/D LINE L1 2830 2999 -4566 * 370 230 30 7 chr13 54962567 54962702 -46910467 + L1MC/D LINE L1 6047 6184 -1381 271 235 15 15 chr13 54962951 54963019 -46910150 + CT-rich Low_complexity Low_complexity 1 68 0 183 42 0 0 chr13 54963090 54963114 -46910055 + (TG)n Simple_repeat Simple_repeat 2 25 0 922 319 90 25 chr13 54963397 54963917 -46909252 - HERV16 LTR ERVL -3677 1319 766 1025 292 72 31 chr13 54964589 54965003 -46908166 - LTR16A LTR ERVL -4 446 16 233 250 0 0 chr13 54965068 54965120 -46908049 + Charlie8 DNA MER1_type 1315 1366 -1051 516 201 88 80 chr13 54965120 54965422 -46907747 + MLT1A2 LTR MaLR 1 374 0 1050 284 64 23 chr13 54965582 54966053 -46907116 + Charlie8 DNA MER1_type 1522 2011 -406 578 307 44 14 chr13 54966292 54966564 -46906605 + L1MC/D LINE L1 6852 7115 -479 24 77 0 0 chr13 54967116 54967168 -46906001 + AT_rich Low_complexity Low_complexity 1 52 0 1678 118 33 62 chr13 54967676 54967980 -46905189 - AluSx SINE Alu -17 295 1 23 33 0 0 chr13 54969378 54969408 -46903761 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr13 54969968 54970005 -46903164 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr13 54970220 54970255 -46902914 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 54970441 54970478 -46902691 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr13 54970620 54970644 -46902525 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr13 54970920 54970951 -46902218 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 54972065 54972095 -46901074 + AT_rich Low_complexity Low_complexity 1 30 0 525 331 12 6 chr13 54972235 54972404 -46900765 + MIR3 SINE MIR 33 202 -6 234 150 0 0 chr13 54974086 54974126 -46899043 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 560 200 30 40 chr13 54974632 54974832 -46898337 - Charlie1a DNA MER1_type -7 1448 1251 1694 216 80 43 chr13 54975268 54975915 -46897254 - Charlie1a DNA MER1_type -7 1448 778 877 219 0 0 chr13 54975971 54976126 -46897043 - FRAM SINE Alu -11 155 1 1555 176 8 0 chr13 54976150 54976405 -46896764 - AluSx SINE Alu -50 262 6 534 206 59 0 chr13 54976405 54976507 -46896662 - AluJo/FLAM SINE Alu -196 116 9 1837 252 37 82 chr13 54976507 54977320 -46895849 - Charlie1a DNA MER1_type -678 777 2 39 38 0 0 chr13 54977940 54977993 -46895176 + AT_rich Low_complexity Low_complexity 1 53 0 349 100 29 0 chr13 54978178 54978248 -46894921 + L1PB1 LINE L1 6078 6149 -2 254 158 53 13 chr13 54978332 54978408 -46894761 + (TA)n Simple_repeat Simple_repeat 1 79 0 192 288 100 38 chr13 54978569 54978649 -46894520 + L2 LINE L2 3184 3268 -4 244 221 78 39 chr13 54979225 54979302 -46893867 + L1MC/D LINE L1 5792 5871 -371 755 321 37 4 chr13 54980395 54980638 -46892531 - MIR SINE MIR 0 262 12 5468 138 17 1 chr13 54980736 54981253 -46891916 + L1PA14 LINE L1 4524 5031 -1130 2405 71 3 3 chr13 54981253 54981563 -46891606 + AluY SINE Alu 1 310 -1 5468 138 17 1 chr13 54981563 54982683 -46890486 + L1PA14 LINE L1 5031 6161 0 2119 191 40 16 chr13 54983036 54983486 -46889683 + MER65C LTR ERV1 1 461 0 237 250 19 0 chr13 54983666 54983718 -46889451 - L2 LINE L2 -5 3308 3256 1885 98 0 47 chr13 54984361 54984637 -46888532 + AluSc SINE Alu 35 297 -12 34 0 0 0 chr13 54985249 54985283 -46887886 + AT_rich Low_complexity Low_complexity 1 34 0 427 329 29 74 chr13 54985475 54985922 -46887247 + L2 LINE L2 2869 3295 -18 221 317 12 79 chr13 54986484 54986648 -46886521 - MIR SINE MIR -38 224 72 27 0 0 0 chr13 54988771 54988798 -46884371 + AT_rich Low_complexity Low_complexity 1 27 0 2037 106 3 3 chr13 54988986 54989269 -46883900 + AluSc SINE Alu 3 285 -24 31 26 0 0 chr13 54989269 54989307 -46883862 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr13 54990753 54990787 -46882382 + AT_rich Low_complexity Low_complexity 1 34 0 425 208 19 0 chr13 54990787 54990893 -46882276 - L1MA8 LINE L1 -4 6287 6180 275 328 128 30 chr13 54991103 54991338 -46881831 + MIR SINE MIR 2 259 -3 230 234 0 0 chr13 54992130 54992177 -46880992 + CT-rich Low_complexity Low_complexity 4 50 0 1900 124 11 3 chr13 54992990 54993304 -46879865 + AluSx SINE Alu 1 316 0 29 28 0 0 chr13 54993457 54993493 -46879676 + AT_rich Low_complexity Low_complexity 1 36 0 517 211 70 6 chr13 54996681 54996837 -46876332 + L1MC/D LINE L1 5331 5496 -863 * 4923 142 15 29 chr13 54996823 54997018 -46876151 + L1PA16 LINE L1 5292 5488 -678 2322 75 3 3 chr13 54997018 54997323 -46875846 + AluY SINE Alu 1 305 -6 4923 142 15 29 chr13 54997323 54998002 -46875167 + L1PA16 LINE L1 5488 6154 -12 21 36 0 0 chr13 54998007 54998035 -46875134 + AT_rich Low_complexity Low_complexity 1 28 0 1635 65 0 39 chr13 54998207 54998436 -46874733 + AluY SINE Alu 1 220 -91 302 400 59 9 chr13 54998551 54998771 -46874398 + L2 LINE L2 2336 2566 -748 207 0 0 0 chr13 54999248 54999271 -46873898 + (TC)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr13 54999271 54999324 -46873845 + AT_rich Low_complexity Low_complexity 1 53 0 369 284 30 73 chr13 55001312 55001544 -46871625 + L2 LINE L2 3091 3312 -1 228 314 31 4 chr13 55001643 55001774 -46871395 + MIR SINE MIR 18 152 -62 2212 92 0 3 chr13 55003486 55003778 -46869391 - AluSc SINE Alu -18 291 1 185 94 31 0 chr13 55005575 55005607 -46867562 + (TA)n Simple_repeat Simple_repeat 1 33 0 250 24 0 49 chr13 55005630 55005671 -46867498 + (TA)n Simple_repeat Simple_repeat 2 40 0 1738 48 0 0 chr13 55005671 55005880 -46867289 - AluY SINE Alu -22 289 81 290 296 166 25 chr13 55006814 55007013 -46866156 - MIR SINE MIR -6 256 30 1444 198 127 17 chr13 55007117 55007526 -46865643 - LTR54B LTR ERV1 -43 455 2 23 0 0 0 chr13 55007827 55007850 -46865319 + AT_rich Low_complexity Low_complexity 1 23 0 217 377 29 29 chr13 55007952 55008090 -46865079 - MIR3 SINE MIR -33 175 38 228 330 77 22 chr13 55008593 55008684 -46864485 + L2 LINE L2 3128 3223 -49 1583 209 84 60 chr13 55008751 55009249 -46863920 - MER67D LTR ERV1 -4 510 1 2027 110 33 13 chr13 55009840 55010140 -46863029 - AluSx SINE Alu -6 306 1 2083 122 13 0 chr13 55010653 55010957 -46862212 + AluSx SINE Alu 1 308 -4 435 165 113 9 chr13 55011300 55011340 -46861829 - LTR48 LTR ERV1 -42 745 711 218 31 0 31 chr13 55011340 55011372 -46861797 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 435 165 113 9 chr13 55011372 55011446 -46861723 - LTR48 LTR ERV1 -76 711 619 1506 226 122 23 chr13 55011483 55011917 -46861252 - LTR48 LTR ERV1 -310 477 1 336 362 49 0 chr13 55011917 55012080 -46861089 - MIR SINE MIR -52 210 40 49 84 0 0 chr13 55012097 55012216 -46860953 + AT_rich Low_complexity Low_complexity 1 119 0 29 18 0 55 chr13 55014317 55014372 -46858797 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr13 55014637 55014658 -46858511 + AT_rich Low_complexity Low_complexity 1 21 0 2193 64 0 7 chr13 55015540 55015823 -46857346 - AluY SINE Alu -30 281 1 288 0 0 0 chr13 55016024 55016056 -46857113 + (CA)n Simple_repeat Simple_repeat 2 33 0 252 232 30 0 chr13 55016061 55016160 -46857009 + (TATATG)n Simple_repeat Simple_repeat 5 106 0 216 143 0 0 chr13 55016151 55016193 -46856976 + (CA)n Simple_repeat Simple_repeat 2 43 0 * 418 270 44 19 chr13 55017056 55017215 -46855954 + L1M4b LINE L1 9 171 -6688 803 354 18 30 chr13 55017260 55017596 -46855573 + L1M4b LINE L1 260 591 -6268 240 269 0 0 chr13 55017733 55017800 -46855369 + L1M4b LINE L1 881 947 -5912 1550 262 28 65 chr13 55018341 55019534 -46853635 + L1M4b LINE L1 1260 2420 -4539 2738 271 58 49 chr13 55019683 55020315 -46852854 + L1M4b LINE L1 2476 3101 -3856 529 252 0 0 chr13 55020315 55020475 -46852694 - FLAM_C SINE Alu 0 160 1 2738 271 58 49 chr13 55020475 55021767 -46851402 + L1M4b LINE L1 3101 4378 -2579 565 203 78 10 chr13 55021775 55021967 -46851202 + L1M4b LINE L1 5120 5324 -1633 761 174 0 0 chr13 55021967 55022088 -46851081 + FLAM_C SINE Alu 1 121 -22 243 0 0 0 chr13 55022088 55022115 -46851054 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 301 281 31 21 chr13 55022115 55022211 -46850958 - L1MC4 LINE L1 -1342 6700 6604 851 192 0 50 chr13 55022232 55022414 -46850755 + FRAM SINE Alu 1 168 -8 603 231 21 119 chr13 55022683 55022926 -46850243 - MER20 DNA MER1_type 0 219 1 210 37 0 0 chr13 55023320 55023347 -46849822 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 32 0 0 chr13 55025274 55025305 -46847864 + AT_rich Low_complexity Low_complexity 1 31 0 1689 60 4 9 chr13 55025305 55025537 -46847632 - L1PA5 LINE L1 -3 6151 5921 228 211 53 20 chr13 55028758 55028910 -46844259 + (TTATA)n Simple_repeat Simple_repeat 5 161 0 186 326 33 43 chr13 55028935 55029027 -46844142 + MIR3 SINE MIR 115 205 -3 2772 207 21 0 chr13 55029288 55029863 -46843306 - L1MB1 LINE L1 -9 6180 5594 1896 219 19 26 chr13 55029847 55030392 -46842777 - L1M3c LINE L1 -4516 2521 1973 * 295 254 0 15 chr13 55030424 55030491 -46842678 - L1M3c LINE L1 -6075 962 897 2132 148 90 20 chr13 55031223 55031623 -46841546 + MSTA LTR MaLR 1 428 0 7528 200 54 10 chr13 55031623 55031892 -46841277 + MSTA-int LTR MaLR 1 257 -1394 2164 101 10 3 chr13 55031892 55032190 -46840979 - AluSc SINE Alu -9 300 1 7528 200 54 10 chr13 55032190 55033502 -46839667 + MSTA-int LTR MaLR 257 1651 0 1873 143 141 8 chr13 55033502 55033879 -46839290 + MSTA LTR MaLR 1 427 -1 1267 226 164 0 chr13 55034183 55034501 -46838668 - MLT1B LTR MaLR -8 382 13 392 319 157 0 chr13 55034542 55034752 -46838417 + MIR SINE MIR 20 262 0 2554 118 3 0 chr13 55035666 55036029 -46837140 + THE1B LTR MaLR 1 364 0 369 0 0 0 chr13 55036246 55036287 -46836882 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 566 156 10 0 chr13 55036295 55036391 -46836778 + L1PA16 LINE L1 6061 6157 -9 315 316 60 86 chr13 55039873 55040107 -46833062 - L1MC/D LINE L1 -2069 5739 5512 298 360 88 0 chr13 55040380 55040527 -46832642 - MIR SINE MIR -56 206 47 50 59 0 0 chr13 55040657 55040742 -46832427 + AT_rich Low_complexity Low_complexity 1 85 0 22 70 0 0 chr13 55042045 55042088 -46831081 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr13 55042597 55042629 -46830540 + AT_rich Low_complexity Low_complexity 1 32 0 572 288 17 51 chr13 55043647 55043824 -46829345 - MIR SINE MIR -90 172 2 470 279 71 41 chr13 55043860 55044057 -46829112 - MIR SINE MIR -11 251 49 211 214 0 0 chr13 55044096 55044138 -46829031 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 23 0 0 0 chr13 55044276 55044299 -46828870 + AT_rich Low_complexity Low_complexity 1 23 0 198 397 0 0 chr13 55044455 55044518 -46828651 + L2 LINE L2 3196 3258 -14 217 244 231 0 chr13 55046930 55047008 -46826161 - MIR SINE MIR -109 153 58 477 240 74 0 chr13 55047090 55047211 -46825958 + FLAM_C SINE Alu 1 130 -3 503 238 16 25 chr13 55047756 55047878 -46825291 - L2 LINE L2 0 3313 3193 288 130 0 0 chr13 55047910 55047956 -46825213 + (TCCC)n Simple_repeat Simple_repeat 1 46 0 208 215 108 86 chr13 55048010 55048103 -46825066 - L2 LINE L2 0 3272 3178 825 200 5 79 chr13 55048720 55048935 -46824234 - MER20 DNA MER1_type 0 219 21 22 35 0 0 chr13 55050109 55050138 -46823031 + AT_rich Low_complexity Low_complexity 1 29 0 8400 137 28 52 chr13 55050619 55051459 -46821710 - L1PA12 LINE L1 -5250 2331 1540 207 0 0 0 chr13 55051459 55051482 -46821687 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8400 137 28 52 chr13 55051482 55052155 -46821014 - L1PA12 LINE L1 -6041 1540 853 5358 105 60 12 chr13 55052154 55053004 -46820165 + L1PA14 LINE L1 5261 6151 -10 * 192 179 0 0 chr13 55053005 55053044 -46820125 + (TA)n Simple_repeat Simple_repeat 1 39 0 192 300 71 0 chr13 55053414 55053484 -46819685 - L3 LINE CR1 -155 1422 1348 339 71 20 91 chr13 55053952 55054051 -46819118 + (TA)n Simple_repeat Simple_repeat 1 92 0 27 62 0 0 chr13 55054372 55054420 -46818749 + AT_rich Low_complexity Low_complexity 1 48 0 1693 96 7 106 chr13 55054503 55054796 -46818373 + AluSx SINE Alu 21 284 -28 1123 77 10 148 chr13 55054796 55054834 -46818335 + AluSq SINE Alu 21 322 0 1733 148 47 0 chr13 55055718 55055996 -46817173 + AluSx SINE Alu 1 291 -21 533 265 17 72 chr13 55056159 55056340 -46816829 - MLT1K LTR MaLR -162 426 256 181 280 20 0 chr13 55056350 55056400 -46816769 - MER5A DNA MER1_type -118 71 21 207 356 43 12 chr13 55056536 55056646 -46816523 - MIR SINE MIR -76 132 40 197 132 26 0 chr13 55056949 55056987 -46816182 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 276 259 61 27 chr13 55058420 55058567 -46814602 + L1ME LINE L1 4903 5054 -1092 415 281 31 51 chr13 55058610 55058806 -46814363 + L2 LINE L2 3067 3258 -55 1256 262 32 37 chr13 55058859 55059260 -46813909 - LTR40c LTR ERVL -66 399 1 249 317 68 31 chr13 55059489 55059650 -46813519 + L1ME LINE L1 5352 5518 -644 23 33 0 0 chr13 55059833 55059863 -46813306 + AT_rich Low_complexity Low_complexity 1 30 0 1507 219 36 20 chr13 55059963 55060319 -46812850 + MLT1A1 LTR MaLR 2 363 -2 26 0 0 0 chr13 55060399 55060425 -46812744 + AT_rich Low_complexity Low_complexity 1 26 0 282 384 23 15 chr13 55060770 55060903 -46812266 + MIR SINE MIR 21 154 -108 361 335 16 21 chr13 55061291 55061479 -46811690 + MLT1L LTR MaLR 429 615 0 233 200 189 0 chr13 55063453 55063543 -46809626 - HAL1b LINE L1 0 1348 1242 3842 227 101 28 chr13 55063616 55064972 -46808197 + Charlie1a DNA MER1_type 1 1455 0 5981 129 5 19 chr13 55065015 55066037 -46807132 - L1P LINE L1 -2518 3628 2621 1028 92 12 0 chr13 55066168 55066332 -46806837 - L1P LINE L1 -738 5428 5263 4797 215 5 27 chr13 55066347 55067536 -46805633 + L1P LINE L1 4073 5235 -911 8050 243 35 15 chr13 55067540 55068730 -46804439 - L1 LINE L1 -1739 4231 3066 2255 100 0 10 chr13 55068730 55069041 -46804128 + AluY SINE Alu 1 308 -3 8050 243 35 15 chr13 55069041 55070768 -46802401 - L1 LINE L1 -2904 3066 1167 2725 287 83 26 chr13 55070764 55072116 -46801053 - L1 LINE L1 -4553 1338 139 * 550 217 0 17 chr13 55072287 55072407 -46800762 - L1 LINE L1 -5772 119 2 266 313 0 20 chr13 55072419 55072518 -46800651 + CT-rich Low_complexity Low_complexity 2 98 0 506 366 57 42 chr13 55076355 55076759 -46796410 + MER115 DNA AcHobo 5 414 -279 310 237 65 21 chr13 55076903 55076996 -46796173 + Zaphod DNA AcHobo 3935 4031 0 180 0 0 0 chr13 55078601 55078621 -46794548 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2379 230 38 8 chr13 55078971 55079583 -46793586 + L1MB7 LINE L1 5525 6154 -30 939 336 46 9 chr13 55079603 55079951 -46793218 + LTR16A LTR ERVL 90 450 0 22 56 0 0 chr13 55080396 55080432 -46792737 + AT_rich Low_complexity Low_complexity 1 36 0 438 20 0 0 chr13 55080545 55080596 -46792573 + (CA)n Simple_repeat Simple_repeat 1 51 0 590 159 14 14 chr13 55080798 55080936 -46792233 + GA-rich Low_complexity Low_complexity 4 141 0 260 302 23 13 chr13 55081614 55081704 -46791465 - MIR SINE MIR -61 147 57 327 305 19 26 chr13 55082511 55082665 -46790504 + LTR16A1 LTR ERVL 23 175 -282 542 63 13 0 chr13 55082743 55082822 -46790347 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3908 220 27 25 chr13 55082850 55084008 -46789161 - L1MA9 LINE L1 -25 6287 5128 21 57 0 0 chr13 55084034 55084069 -46789100 + AT_rich Low_complexity Low_complexity 1 35 0 280 299 63 23 chr13 55084838 55085012 -46788157 - L1ME LINE L1 -581 5585 5405 1109 265 62 80 chr13 55085166 55085960 -46787209 - L2 LINE L2 0 3313 2491 2689 102 3 0 chr13 55086113 55086476 -46786693 - THE1B LTR MaLR 0 364 1 1414 108 14 0 chr13 55086568 55086780 -46786389 + L1PB2 LINE L1 5935 6149 -2 319 296 160 0 chr13 55087327 55087452 -46785717 + MIR SINE MIR 47 191 -71 2447 61 0 0 chr13 55089801 55090098 -46783071 + AluY SINE Alu 1 297 -14 2001 145 0 0 chr13 55090183 55090473 -46782696 - AluSx SINE Alu -18 294 5 1219 293 71 43 chr13 55090894 55091427 -46781742 - MLT1E LTR MaLR -6 587 40 1845 143 6 34 chr13 55091524 55091845 -46781324 - AluSx SINE Alu 0 312 1 241 221 0 59 chr13 55091946 55092014 -46781155 + L2 LINE L2 3209 3272 0 24 0 0 0 chr13 55093225 55093249 -46779920 + AT_rich Low_complexity Low_complexity 1 24 0 203 267 0 0 chr13 55093286 55093331 -46779838 + T-rich Low_complexity Low_complexity 3 47 0 268 328 94 70 chr13 55093837 55094239 -46778930 - MLT1J LTR MaLR -97 414 3 561 186 97 8 chr13 55094508 55094632 -46778537 + MER3 DNA MER1_type 47 181 -28 202 146 0 62 chr13 55094850 55094898 -46778271 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 3159 141 35 0 chr13 55095020 55095537 -46777632 + L1PA16 LINE L1 5628 6162 -4 715 75 9 28 chr13 55095714 55095820 -46777349 + THE1A LTR MaLR 1 104 -260 972 105 8 0 chr13 55095832 55095965 -46777204 + THE1A LTR MaLR 222 355 0 10992 105 16 1 chr13 55095965 55097522 -46775647 + THE1A-int LTR MaLR 1 1580 0 2346 115 6 11 chr13 55097522 55097879 -46775290 + THE1A LTR MaLR 1 355 0 263 325 64 48 chr13 55097879 55098254 -46774915 - L1ME LINE L1 -423 5698 5318 337 364 69 31 chr13 55098256 55098765 -46774404 - L1ME LINE L1 -840 5306 4779 214 209 16 105 chr13 55099652 55099843 -46773326 + T-rich Low_complexity Low_complexity 2 175 0 247 274 0 0 chr13 55100252 55100325 -46772844 + (TA)n Simple_repeat Simple_repeat 2 74 0 358 312 103 20 chr13 55100512 55100804 -46772365 - L1ME LINE L1 -3630 2516 2201 23 54 0 0 chr13 55101044 55101081 -46772088 + AT_rich Low_complexity Low_complexity 1 37 0 245 323 162 4 chr13 55101180 55101409 -46771760 - L1ME LINE L1 -391 5779 5515 325 272 44 52 chr13 55101424 55101560 -46771609 - L1ME LINE L1 -3336 2810 2676 284 286 44 0 chr13 55101582 55101673 -46771496 + MLT1J LTR MaLR 37 131 -380 336 278 26 43 chr13 55101741 55101856 -46771313 + MLT1J LTR MaLR 376 488 -23 23 68 0 0 chr13 55101865 55101909 -46771260 + AT_rich Low_complexity Low_complexity 1 44 0 727 355 133 21 chr13 55102100 55102633 -46770536 + L3 LINE CR1 984 1576 -1 180 330 70 10 chr13 55103590 55103690 -46769479 - MIR3 SINE MIR -7 201 96 572 323 123 25 chr13 55104864 55105394 -46767775 + L1MC4a LINE L1 5254 5835 -1973 386 310 0 28 chr13 55105552 55105694 -46767475 + MIR SINE MIR 36 173 -89 205 171 14 57 chr13 55105753 55105823 -46767346 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 2385 49 3 13 chr13 55107049 55107356 -46765813 + AluY SINE Alu 1 304 -7 271 237 0 0 chr13 55107370 55107429 -46765740 + MLT1J LTR MaLR 474 532 -17 1149 310 74 24 chr13 55107838 55108335 -46764834 + MLT1G1 LTR MaLR 73 594 -1 286 325 32 0 chr13 55108586 55108712 -46764457 + Charlie8 DNA MER1_type 49 178 -2239 26 0 0 0 chr13 55109448 55109474 -46763695 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr13 55110789 55110817 -46762352 + AT_rich Low_complexity Low_complexity 1 28 0 895 209 33 52 chr13 55112617 55112828 -46760341 - MER58A DNA MER1_type -11 213 7 25 51 0 0 chr13 55112868 55112907 -46760262 + AT_rich Low_complexity Low_complexity 1 39 0 447 304 106 24 chr13 55113199 55113406 -46759763 - MIR SINE MIR 0 262 39 22 70 0 0 chr13 55113479 55113522 -46759647 + AT_rich Low_complexity Low_complexity 1 43 0 301 320 29 6 chr13 55113591 55113763 -46759406 + L1ME4a LINE L1 5730 5905 -216 610 210 160 22 chr13 55113792 55113973 -46759196 + MER63A DNA MER1_type 3 208 -2 934 307 31 34 chr13 55114029 55114417 -46758752 - LTR16B LTR ERVL -4 460 74 1792 163 3 13 chr13 55114641 55114942 -46758227 - AluJb SINE Alu 0 312 15 849 236 14 108 chr13 55115263 55115551 -46757618 + MIR SINE MIR 2 262 0 354 330 9 0 chr13 55115688 55115803 -46757366 + MIR3 SINE MIR 81 196 -12 193 333 38 38 chr13 55116459 55116564 -46756605 - MIR SINE MIR -48 214 110 22 0 0 0 chr13 55116597 55116619 -46756550 + AT_rich Low_complexity Low_complexity 1 22 0 258 193 0 0 chr13 55116781 55116838 -46756331 + (CA)n Simple_repeat Simple_repeat 2 58 0 576 312 11 0 chr13 55116911 55117100 -46756069 + LTR16C LTR ERVL 301 491 0 380 315 51 22 chr13 55117107 55117285 -46755884 - MIR SINE MIR -73 189 7 200 317 82 16 chr13 55118326 55118509 -46754660 - MIR SINE MIR 0 262 68 1645 262 73 65 chr13 55118529 55119116 -46754053 + MER90 LTR ERV1 23 614 0 279 281 0 0 chr13 55119117 55119181 -46753988 - MIR SINE MIR -152 110 47 21 0 0 0 chr13 55119639 55119660 -46753509 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 55119797 55119819 -46753350 + AT_rich Low_complexity Low_complexity 1 22 0 1293 185 126 0 chr13 55119823 55119943 -46753226 + AluJo SINE Alu 1 105 -207 267 31 0 0 chr13 55119943 55119975 -46753194 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1293 185 126 0 chr13 55119975 55120108 -46753061 + AluJo SINE Alu 105 286 -26 372 88 0 0 chr13 55120108 55120165 -46753004 + (TA)n Simple_repeat Simple_repeat 1 57 0 297 0 0 0 chr13 55120164 55120197 -46752972 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 41 93 0 0 chr13 55120296 55120414 -46752755 + AT_rich Low_complexity Low_complexity 1 118 0 1004 237 59 50 chr13 55120559 55120917 -46752252 - L1ME1 LINE L1 -72 6094 5734 2850 274 127 53 chr13 55121201 55121526 -46751643 - L1MEc LINE L1 -4216 2180 1880 1474 201 17 17 chr13 55121526 55121824 -46751345 + AluJb SINE Alu 1 298 -14 2850 274 127 53 chr13 55121824 55122858 -46750311 - L1MEc LINE L1 -4516 1880 625 910 222 38 14 chr13 55122858 55123070 -46750099 + MER20 DNA MER1_type 3 219 0 2850 274 127 53 chr13 55123070 55123699 -46749470 - L1MEc LINE L1 -5771 625 44 22 56 0 0 chr13 55124377 55124413 -46748756 + AT_rich Low_complexity Low_complexity 1 36 0 280 272 122 75 chr13 55124440 55124587 -46748582 - MIR SINE MIR -2 260 107 2054 116 0 3 chr13 55124980 55125316 -46747853 + AluSx SINE Alu 1 335 0 283 161 49 12 chr13 55127255 55127336 -46745833 + (TA)n Simple_repeat Simple_repeat 2 85 0 237 333 22 0 chr13 55127462 55127552 -46745617 - MIR SINE MIR -114 148 57 33 43 0 0 chr13 55127707 55127754 -46745415 + AT_rich Low_complexity Low_complexity 1 47 0 217 355 36 9 chr13 55127915 55128025 -46745144 + L3 LINE CR1 1363 1475 -102 38 68 0 0 chr13 55128349 55128422 -46744747 + AT_rich Low_complexity Low_complexity 1 73 0 180 0 0 0 chr13 55128672 55128692 -46744477 + (CA)n Simple_repeat Simple_repeat 1 20 0 1635 223 87 75 chr13 55129249 55129675 -46743494 - L1MD3 LINE L1 -169 7826 7407 335 267 13 0 chr13 55129675 55129750 -46743419 - MLT1F1 LTR MaLR -456 111 36 1635 223 87 75 chr13 55129750 55130137 -46743032 - L1MD3 LINE L1 -588 7407 6700 261 0 0 0 chr13 55130343 55130372 -46742797 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 470 301 105 29 chr13 55131008 55131247 -46741922 + MIR SINE MIR 1 257 -5 228 359 120 12 chr13 55131394 55131561 -46741608 - MIR3 SINE MIR -15 193 9 1781 155 7 45 chr13 55131777 55132087 -46741082 - AluSx SINE Alu -14 298 1 22 56 0 0 chr13 55132158 55132194 -46740975 + AT_rich Low_complexity Low_complexity 1 36 0 1620 183 44 27 chr13 55132792 55133158 -46740011 + THE1C LTR MaLR 1 372 -3 23 68 0 0 chr13 55133535 55133579 -46739590 + AT_rich Low_complexity Low_complexity 1 44 0 867 310 17 13 chr13 55133587 55133826 -46739343 - MIR SINE MIR -21 241 2 369 294 100 69 chr13 55135766 55136127 -46737042 - HAL1 LINE L1 -810 1697 1326 25 0 0 0 chr13 55136633 55136658 -46736511 + AT_rich Low_complexity Low_complexity 1 25 0 186 143 0 0 chr13 55137034 55137069 -46736100 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr13 55137085 55137106 -46736063 + AT_rich Low_complexity Low_complexity 1 21 0 473 229 151 64 chr13 55138158 55138594 -46734575 - L1MC5 LINE L1 -35 7926 7453 2204 107 3 3 chr13 55139539 55139847 -46733322 - AluSc SINE Alu -1 308 1 2399 52 0 13 chr13 55140436 55140745 -46732424 - AluY SINE Alu -6 305 1 411 260 10 0 chr13 55140910 55141010 -46732159 + MLT1A1 LTR MaLR 52 152 -213 413 120 0 27 chr13 55141013 55141088 -46732081 + (GGAGAA)n Simple_repeat Simple_repeat 3 75 0 424 278 26 9 chr13 55141124 55141239 -46731930 + MLT1A1 LTR MaLR 163 279 -86 203 254 61 70 chr13 55142335 55142449 -46730720 - MIR SINE MIR -60 202 90 204 97 0 0 chr13 55142755 55142786 -46730383 + (TC)n Simple_repeat Simple_repeat 1 31 0 1941 174 113 9 chr13 55144071 55144507 -46728662 - LTR45B LTR ERV1 0 525 14 373 274 9 18 chr13 55144506 55144619 -46728550 - MER97c DNA MER1_type? -978 112 1 * 198 0 0 0 chr13 55145123 55145145 -46728024 + (A)n Simple_repeat Simple_repeat 1 22 0 477 342 71 5 chr13 55145198 55145394 -46727775 - MIR SINE MIR -32 230 22 279 0 0 0 chr13 55145670 55145701 -46727468 + (TG)n Simple_repeat Simple_repeat 1 31 0 2134 122 0 3 chr13 55145826 55146120 -46727049 + AluSx SINE Alu 1 293 -19 2856 116 30 0 chr13 55146289 55146753 -46726416 + L1PA10 LINE L1 5710 6186 0 21 0 0 0 chr13 55148058 55148079 -46725090 + AT_rich Low_complexity Low_complexity 1 21 0 3044 121 14 14 chr13 55150708 55151204 -46721965 + L1PA13 LINE L1 5661 6156 -7 1665 165 53 0 chr13 55151206 55151491 -46721678 + AluSx SINE Alu 1 300 -12 303 28 0 0 chr13 55151782 55151818 -46721351 + (CA)n Simple_repeat Simple_repeat 1 36 0 202 345 0 24 chr13 55151958 55152042 -46721127 + MIR SINE MIR 47 128 -80 21 0 0 0 chr13 55152476 55152497 -46720672 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 55152550 55152588 -46720581 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr13 55152931 55152969 -46720200 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 55155067 55155088 -46718081 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chr13 55155677 55155708 -46717461 + (TCTCTG)n Simple_repeat Simple_repeat 4 34 0 298 150 0 25 chr13 55155708 55155788 -46717381 + (TA)n Simple_repeat Simple_repeat 2 79 0 229 225 9 54 chr13 55155793 55155904 -46717265 - L1MC4 LINE L1 -1338 6704 6599 321 283 239 6 chr13 55155999 55156158 -46717011 - MIR SINE MIR -8 254 59 25 0 0 0 chr13 55156328 55156353 -46716816 + AT_rich Low_complexity Low_complexity 1 25 0 1941 150 3 3 chr13 55158587 55158894 -46714275 - AluSx SINE Alu -5 307 1 28 71 0 0 chr13 55159658 55159714 -46713455 + AT_rich Low_complexity Low_complexity 1 56 0 190 325 50 12 chr13 55159832 55159912 -46713257 - L2 LINE L2 -176 3096 3014 23 0 0 0 chr13 55163077 55163100 -46710069 + AT_rich Low_complexity Low_complexity 1 23 0 1221 269 13 38 chr13 55164015 55164387 -46708782 + MLT1A2 LTR MaLR 1 363 -11 462 248 244 28 chr13 55165775 55166071 -46707098 - MLT1G1 LTR MaLR -1 594 209 3633 187 31 51 chr13 55166287 55167175 -46705994 + L1MA9 LINE L1 5405 6275 -37 23 0 0 0 chr13 55167777 55167800 -46705369 + AT_rich Low_complexity Low_complexity 1 23 0 499 290 124 16 chr13 55168093 55168407 -46704762 + HAL1b LINE L1 456 803 -545 1862 212 19 14 chr13 55168466 55168890 -46704279 - MER65C LTR ERV1 -35 426 1 503 43 14 0 chr13 55169153 55169223 -46703946 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 231 324 68 11 chr13 55169673 55169849 -46703320 + L1M4 LINE L1 3768 3953 -2193 1236 277 107 21 chr13 55170133 55170602 -46702567 - LTR40a LTR ERVL -2 517 9 25 0 0 0 chr13 55170947 55170972 -46702197 + AT_rich Low_complexity Low_complexity 1 25 0 38 68 0 0 chr13 55172240 55172313 -46700856 + AT_rich Low_complexity Low_complexity 1 73 0 21 71 0 0 chr13 55172759 55172801 -46700368 + AT_rich Low_complexity Low_complexity 1 42 0 399 21 0 0 chr13 55173132 55173180 -46699989 + (TC)n Simple_repeat Simple_repeat 1 48 0 316 302 31 64 chr13 55173631 55173841 -46699328 - MIR3 SINE MIR -57 205 6 256 65 65 0 chr13 55173985 55174031 -46699138 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 394 310 112 5 chr13 55174076 55174277 -46698892 - MIR SINE MIR -7 255 35 208 286 39 0 chr13 55174317 55174394 -46698775 - MIR SINE MIR -19 243 164 1909 134 7 3 chr13 55174463 55174630 -46698539 - AluSx SINE Alu -19 293 123 191 36 36 0 chr13 55174630 55174658 -46698511 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1909 134 7 3 chr13 55174658 55174782 -46698387 - AluSx SINE Alu -189 123 1 1513 118 0 22 chr13 55174857 55175085 -46698084 + AluSg/x SINE Alu 82 304 -6 1324 249 36 116 chr13 55175578 55175792 -46697377 - L1MEc LINE L1 -1488 4727 4498 327 167 0 0 chr13 55175792 55175846 -46697323 - AluS SINE Alu -20 281 228 1324 249 36 116 chr13 55175846 55176356 -46696813 - L1MEc LINE L1 -1717 4498 4012 1120 268 50 18 chr13 55176350 55176734 -46696435 + L1MD2 LINE L1 5962 6357 -2 * 2347 100 3 0 chr13 55176869 55177180 -46695989 + AluSq SINE Alu 1 312 -1 198 103 0 0 chr13 55178216 55178245 -46694924 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 657 223 0 7 chr13 55178368 55178507 -46694662 + FLAM_C SINE Alu 1 138 -5 851 194 6 0 chr13 55178519 55178715 -46694454 + AluJb SINE Alu 121 317 0 3132 224 111 41 chr13 55178888 55180065 -46693104 + Zaphod DNA AcHobo 2661 3920 -111 634 299 125 16 chr13 55180937 55181576 -46691593 - L1MEc LINE L1 -2769 3446 2738 24 0 0 0 chr13 55181596 55181620 -46691549 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 55181649 55181670 -46691499 + AT_rich Low_complexity Low_complexity 1 21 0 1142 78 0 7 chr13 55181718 55181872 -46691297 + AluY SINE Alu 159 311 0 592 270 83 4 chr13 55181872 55182150 -46691019 - L1MEc LINE L1 -3601 2614 2315 21 0 0 0 chr13 55182191 55182212 -46690957 + AT_rich Low_complexity Low_complexity 1 21 0 743 303 89 23 chr13 55182280 55183481 -46689688 - L1M4c LINE L1 -3441 2941 1527 371 292 38 11 chr13 55183683 55183868 -46689301 - L1MEc LINE L1 -4830 1566 1377 339 244 38 56 chr13 55184062 55184222 -46688947 - L1MEc LINE L1 -5071 1134 978 1010 211 40 116 chr13 55184296 55184718 -46688451 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 55184862 55184884 -46688285 + AT_rich Low_complexity Low_complexity 1 22 0 6107 172 8 15 chr13 55185421 55186467 -46686702 - HSMAR2 DNA Mariner 0 1302 264 2012 150 69 17 chr13 55186467 55186813 -46686356 + THE1B LTR MaLR 1 364 0 5135 105 17 0 chr13 55186813 55187538 -46685631 + THE1B-int LTR MaLR 1 737 -843 3516 140 11 19 chr13 55187538 55188102 -46685067 - LTR6A LTR ERV1 0 564 6 6135 115 1 0 chr13 55188136 55188982 -46684187 + THE1B-int LTR MaLR 734 1580 0 1882 158 79 15 chr13 55188982 55189324 -46683845 + THE1B LTR MaLR 1 364 0 1379 155 8 12 chr13 55189324 55189576 -46683593 - HSMAR2 DNA Mariner -1033 269 19 183 342 64 43 chr13 55189946 55190133 -46683036 - L2 LINE L2 -1305 2009 1819 1772 150 177 16 chr13 55190294 55190661 -46682508 + MSTA LTR MaLR 3 428 0 5881 164 214 14 chr13 55190663 55191477 -46681692 + MSTA-int LTR MaLR 3 653 -927 2068 152 30 28 chr13 55191477 55191840 -46681329 - THE1B LTR MaLR 0 364 1 5881 164 214 14 chr13 55191840 55192340 -46680829 + MSTA-int LTR MaLR 653 1579 -1 1555 171 190 11 chr13 55192341 55192704 -46680465 + MSTA LTR MaLR 1 428 0 27 49 0 0 chr13 55193760 55193801 -46679368 + AT_rich Low_complexity Low_complexity 1 41 0 462 302 215 0 chr13 55194730 55194935 -46678234 + MIR SINE MIR 9 257 -5 249 33 0 0 chr13 55195641 55195671 -46677498 + (A)n Simple_repeat Simple_repeat 1 30 0 397 337 27 16 chr13 55196376 55196560 -46676609 + MIR SINE MIR 56 241 -21 1730 95 81 44 chr13 55196680 55196975 -46676194 + AluY SINE Alu 1 306 -5 714 180 0 0 chr13 55197004 55197126 -46676043 + FRAM SINE Alu 40 161 -15 21 71 0 0 chr13 55197719 55197761 -46675408 + AT_rich Low_complexity Low_complexity 1 42 0 512 297 102 32 chr13 55298250 55298481 -46574688 - L1MEc LINE L1 -4564 1832 1619 183 42 0 0 chr13 55298481 55298505 -46574664 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 512 297 102 32 chr13 55298505 55298759 -46574410 - L1MEc LINE L1 -4777 1619 1293 2221 131 30 35 chr13 55298759 55299125 -46574044 + THE1B LTR MaLR 1 364 0 512 297 102 32 chr13 55299125 55299254 -46573915 - L1MEc LINE L1 -5103 1293 1174 328 263 41 94 chr13 55299328 55299499 -46573670 - MLT1G1 LTR MaLR -28 514 353 374 254 42 17 chr13 55299584 55299702 -46573467 - MLT1G1 LTR MaLR -317 278 158 27 29 0 0 chr13 55299794 55299828 -46573341 + AT_rich Low_complexity Low_complexity 1 34 0 224 356 29 39 chr13 55300284 55300388 -46572781 - L2 LINE L2 -209 3063 2961 1061 294 32 32 chr13 55300674 55300921 -46572248 + L1PBb LINE L1 10 259 -6590 3881 124 11 2 chr13 55300921 55301468 -46571701 + MER41A LTR ERV1 3 554 0 1061 294 32 32 chr13 55301468 55301632 -46571537 + L1PBb LINE L1 258 421 -6428 722 103 19 0 chr13 55302075 55302182 -46570987 + MER41B LTR ERV1 410 518 -117 596 319 154 51 chr13 55302632 55302983 -46570186 + L1PBb LINE L1 671 1057 -5792 370 279 79 48 chr13 55303159 55303324 -46569845 + L1PBb LINE L1 999 1168 -5681 5280 188 69 10 chr13 55303331 55304458 -46568711 + L1PBb LINE L1 1267 2460 -4388 22 56 0 0 chr13 55304783 55304819 -46568350 + AT_rich Low_complexity Low_complexity 1 36 0 3008 203 86 104 chr13 55304819 55305935 -46567234 - MER52A LTR ERV1 0 1755 660 209 128 26 0 chr13 55305953 55305992 -46567177 + (TA)n Simple_repeat Simple_repeat 1 40 0 1304 164 52 35 chr13 55306016 55306303 -46566866 - L1MA7 LINE L1 -27 6264 5973 1610 260 44 30 chr13 55306522 55307064 -46566105 - L1ME1 LINE L1 -5 6161 5612 1008 180 6 0 chr13 55307058 55307230 -46565939 - L1MB2 LINE L1 -332 6075 5903 * 674 221 75 98 chr13 55307264 55307476 -46565693 - L1MB2 LINE L1 -2870 3512 3309 1310 224 39 86 chr13 55307476 55307859 -46565310 + MLT1A1 LTR MaLR 1 365 0 674 221 75 98 chr13 55307859 55307981 -46565188 - L1MB2 LINE L1 -3073 3309 3186 * 872 238 25 73 chr13 55307975 55308290 -46564879 - L1MB2 LINE L1 -3593 2789 2490 * 1985 227 21 14 chr13 55308282 55308700 -46564469 - L1MB2 LINE L1 -5943 441 21 1339 210 148 7 chr13 55308840 55309274 -46563895 + LTR54B LTR ERV1 2 496 -2 34 0 0 0 chr13 55309358 55309392 -46563777 + AT_rich Low_complexity Low_complexity 1 34 0 249 33 0 0 chr13 55309609 55309639 -46563530 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 741 140 73 18 chr13 55310647 55310811 -46562358 - MER53 DNA DNA -16 173 1 24 41 0 20 chr13 55310976 55311009 -46562160 + AT_rich Low_complexity Low_complexity 1 34 -14 2114 120 3 0 chr13 55311009 55311301 -46561868 - AluSg SINE Alu -17 293 1 24 41 0 20 chr13 55311301 55311316 -46561853 + AT_rich Low_complexity Low_complexity 34 48 0 312 228 25 0 chr13 55313483 55313562 -46559607 + MLT1J1 LTR MaLR 363 443 -3 2222 90 33 0 chr13 55314572 55314873 -46558296 + AluSx SINE Alu 2 312 0 191 391 0 0 chr13 55316431 55316500 -46556669 + L2 LINE L2 3235 3303 -10 1955 114 20 139 chr13 55316644 55317084 -46556085 + L1P4 LINE L1 5424 5811 -355 3361 107 10 4 chr13 55317084 55317578 -46555591 + L1PA16 LINE L1 5660 6156 -10 1558 217 0 0 chr13 55318207 55318506 -46554663 + AluJo SINE Alu 5 303 -9 27 62 0 0 chr13 55319232 55319280 -46553889 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr13 55321097 55321118 -46552051 + AT_rich Low_complexity Low_complexity 1 21 0 204 146 0 24 chr13 55321483 55321524 -46551645 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 466 213 0 0 chr13 55323349 55323443 -46549726 - MER92B LTR ERV1 0 636 543 1142 220 124 43 chr13 55323462 55323834 -46549335 - MER92B LTR ERV1 -233 403 2 2070 124 3 16 chr13 55324018 55324324 -46548845 + AluSq SINE Alu 1 302 -11 1375 139 14 0 chr13 55324324 55324547 -46548622 - Tigger1 DNA MER2_type -2192 226 1 2077 137 0 3 chr13 55324619 55324969 -46548200 - AluSx SINE Alu 0 349 1 358 224 51 31 chr13 55325041 55325139 -46548030 + MIR SINE MIR 97 196 -66 2202 165 54 7 chr13 55325594 55326000 -46547169 - MER57B LTR ERV1 0 434 10 787 82 116 2 chr13 55326005 55326212 -46546957 - MER57B-int LTR ERV1 0 7537 7274 678 161 16 8 chr13 55326213 55326337 -46546832 - LTR54B LTR ERV1 -369 129 5 11536 126 27 25 chr13 55326339 55326862 -46546307 - PABL_A-int LTR ERV1 -384 7153 6633 2743 16 0 0 chr13 55326862 55327170 -46545999 - AluYb8 SINE Alu -10 308 1 11536 126 27 25 chr13 55327170 55328489 -46544680 - PABL_A-int LTR ERV1 -904 6633 5307 5765 170 67 52 chr13 55328492 55329085 -46544084 - PABL_A-int LTR ERV1 -1702 3313 2730 2255 103 0 13 chr13 55329085 55329395 -46543774 - AluY SINE Alu 0 311 6 5765 170 67 52 chr13 55329395 55330868 -46542301 - PABL_A-int LTR ERV1 -2285 2730 1732 1545 121 0 17 chr13 55330868 55331108 -46542061 - THE1A LTR MaLR -119 236 1 305 100 0 50 chr13 55332667 55332727 -46540442 + (TGG)n Simple_repeat Simple_repeat 1 57 0 981 292 30 59 chr13 55332833 55333237 -46539932 + REP3 LTR ERV 1 392 -170 1463 174 32 22 chr13 55333506 55333817 -46539352 + L1MA8 LINE L1 5959 6272 -19 215 207 35 0 chr13 55333873 55333931 -46539238 + (TAA)n Simple_repeat Simple_repeat 2 61 0 213 175 0 0 chr13 55335072 55335112 -46538057 + (TA)n Simple_repeat Simple_repeat 2 41 0 366 349 42 26 chr13 55335220 55335527 -46537642 - HAL1 LINE L1 -803 1704 1393 365 358 81 41 chr13 55336025 55336419 -46536750 - L2 LINE L2 -18 3295 2886 224 75 0 25 chr13 55336449 55336489 -46536680 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 477 339 71 26 chr13 55336652 55337003 -46536166 - L2 LINE L2 -917 2397 2031 264 40 60 0 chr13 55337705 55337755 -46535414 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 1541 161 4 15 chr13 55337758 55338019 -46535150 - AluSx SINE Alu -29 283 26 2081 122 0 0 chr13 55338304 55338590 -46534579 + AluSq SINE Alu 1 286 -27 435 100 100 0 chr13 55338590 55338740 -46534429 + (TA)n Simple_repeat Simple_repeat 2 166 0 189 321 24 24 chr13 55339046 55339130 -46534039 - L2 LINE L2 -221 3051 2968 2280 84 0 6 chr13 55339149 55339460 -46533709 + AluY SINE Alu 1 309 -2 180 0 0 0 chr13 55339523 55339543 -46533626 + (GA)n Simple_repeat Simple_repeat 2 21 0 243 297 0 16 chr13 55339660 55339724 -46533445 + L1ME LINE L1 383 445 -5625 216 119 48 0 chr13 55339813 55339855 -46533314 + (CAA)n Simple_repeat Simple_repeat 2 45 0 264 264 48 8 chr13 55339866 55339991 -46533178 + L1ME LINE L1 542 671 -5409 * 1467 215 44 22 chr13 55339986 55340396 -46532773 + L1MA10 LINE L1 5887 6305 -29 934 289 123 28 chr13 55340398 55341082 -46532087 + L1M4 LINE L1 3370 4118 -2028 231 218 58 35 chr13 55341118 55341205 -46531964 + L1M4 LINE L1 5183 5271 -875 * 419 217 11 0 chr13 55341199 55341291 -46531878 - L1M4 LINE L1 -1348 4798 4706 277 197 0 70 chr13 55341301 55341372 -46531797 - L1M1 LINE L1 -517 5788 5723 394 147 13 0 chr13 55341374 55341449 -46531720 - L1M4 LINE L1 -1455 4691 4616 22 58 0 43 chr13 55342043 55342112 -46531057 + AT_rich Low_complexity Low_complexity 1 66 0 613 356 78 17 chr13 55343632 55344042 -46529127 - L2 LINE L2 0 3313 2879 469 323 131 41 chr13 55344146 55344657 -46528512 - L1M4 LINE L1 -1022 5124 4568 1518 114 7 39 chr13 55344687 55344968 -46528201 - L1PA7 LINE L1 0 6154 5883 22 35 0 0 chr13 55345394 55345423 -46527746 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr13 55345565 55345601 -46527568 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr13 55346224 55346268 -46526901 + AT_rich Low_complexity Low_complexity 1 44 0 829 122 0 0 chr13 55347085 55347216 -46525953 - L1PA16 LINE L1 -9 6157 6027 355 284 32 32 chr13 55348427 55348582 -46524587 + HAL1b LINE L1 245 399 -949 28 0 0 0 chr13 55349771 55349799 -46523370 + AT_rich Low_complexity Low_complexity 1 28 0 255 31 0 0 chr13 55350660 55350692 -46522477 + (TC)n Simple_repeat Simple_repeat 1 32 0 400 360 91 34 chr13 55350760 55351477 -46521692 + L2 LINE L2 1852 2609 -705 290 317 77 48 chr13 55351545 55351753 -46521416 + MIR SINE MIR 5 218 -44 233 373 63 48 chr13 55352039 55352190 -46520979 - L2 LINE L2 -358 2956 2798 873 269 28 0 chr13 55352190 55352402 -46520767 - MER20 DNA MER1_type 0 219 2 233 373 63 48 chr13 55352402 55352518 -46520651 - L2 LINE L2 -516 2798 2685 2245 68 0 7 chr13 55352942 55353268 -46519901 + AluSg SINE Alu 1 324 0 217 297 68 42 chr13 55353398 55353516 -46519653 + L2 LINE L2 2701 2821 -493 1969 108 4 0 chr13 55353746 55354014 -46519155 + AluSp SINE Alu 1 269 -44 21 0 0 0 chr13 55354344 55354365 -46518804 + AT_rich Low_complexity Low_complexity 1 21 0 238 279 48 58 chr13 55355737 55355841 -46517328 + L2 LINE L2 3203 3305 -8 799 179 0 70 chr13 55356650 55356806 -46516363 + AluJo SINE Alu 39 183 -129 187 355 18 9 chr13 55356979 55357089 -46516080 + MIR3 SINE MIR 91 201 -7 24 53 0 0 chr13 55359248 55359286 -46513883 + AT_rich Low_complexity Low_complexity 1 38 0 192 283 0 0 chr13 55360851 55360897 -46512272 + L2 LINE L2 3192 3237 -76 670 161 153 0 chr13 55360947 55361071 -46512098 - FRAM SINE Alu -11 165 23 42 57 0 0 chr13 55361150 55361220 -46511949 + AT_rich Low_complexity Low_complexity 1 70 0 22 70 0 0 chr13 55362137 55362180 -46510989 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 55362637 55362658 -46510511 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr13 55362806 55362837 -46510332 + AT_rich Low_complexity Low_complexity 1 31 0 1379 211 53 77 chr13 55362972 55363346 -46509823 - MLT2C2 LTR ERVL -5 459 97 3342 150 45 15 chr13 55363346 55363940 -46509229 - LTR9 LTR ERV1 0 612 1 1379 211 53 77 chr13 55363940 55364035 -46509134 - MLT2C2 LTR ERVL -367 97 1 363 109 18 0 chr13 55364737 55364792 -46508377 - THE1B LTR MaLR 0 364 309 1829 224 28 13 chr13 55366901 55367359 -46505810 - MLT2B1 LTR ERVL 0 464 1 24 0 0 0 chr13 55368268 55368292 -46504877 + AT_rich Low_complexity Low_complexity 1 24 0 289 298 32 0 chr13 55368404 55368498 -46504671 + MLT1J1 LTR MaLR 339 435 -11 378 74 0 0 chr13 55369324 55369378 -46503791 + (TG)n Simple_repeat Simple_repeat 2 55 0 321 311 226 39 chr13 55369600 55369857 -46503312 + MLT1J2 LTR MaLR 14 318 -132 1762 229 63 65 chr13 55369875 55370430 -46502739 + MLT2B3 LTR ERVL 1 554 0 294 357 158 30 chr13 55370506 55371253 -46501916 - L2 LINE L2 -626 2688 1846 1532 189 3 47 chr13 55371324 55371642 -46501527 - AluJb SINE Alu -4 308 5 775 280 64 60 chr13 55371661 55372114 -46501055 + LTR16A1 LTR ERVL 3 457 0 355 105 11 137 chr13 55372296 55372391 -46500778 - MER53 DNA DNA -4 185 103 466 202 11 0 chr13 55372516 55372610 -46500559 - MER53 DNA DNA -94 95 1 1937 249 55 14 chr13 55372820 55372878 -46500291 - ERVL-B1 LTR ERVL -4949 815 761 1684 38 0 9 chr13 55372878 55373090 -46500079 - L1PA5 LINE L1 0 6154 5945 1937 249 55 14 chr13 55373090 55373541 -46499628 - ERVL-B1 LTR ERVL -5003 761 285 479 304 0 18 chr13 55373580 55373748 -46499421 - ERVL-B1 LTR ERVL -5466 188 24 28 0 0 0 chr13 55373773 55373801 -46499368 + AT_rich Low_complexity Low_complexity 1 28 0 733 246 94 13 chr13 55373835 55374059 -46499110 - MLT2B1 LTR ERVL 0 520 279 222 150 0 0 chr13 55374097 55374137 -46499032 + (TC)n Simple_repeat Simple_repeat 2 41 0 528 103 41 0 chr13 55374181 55374278 -46498891 + (TAGA)n Simple_repeat Simple_repeat 1 101 0 484 189 0 32 chr13 55375099 55375194 -46497975 + FLAM SINE Alu 38 129 -14 813 288 126 12 chr13 55375252 55375585 -46497584 - MLT1B LTR MaLR -19 371 1 1515 281 81 54 chr13 55375615 55375769 -46497400 + L1M4 LINE L1 1077 1225 -5419 1729 199 0 0 chr13 55375769 55376061 -46497108 + AluJo SINE Alu 3 294 -18 1515 281 81 54 chr13 55376061 55377228 -46495941 + L1M4 LINE L1 1225 2359 -4285 1664 193 42 0 chr13 55377228 55377559 -46495610 - MER7A DNA MER2_type 0 346 4 1515 281 81 54 chr13 55377559 55378476 -46494693 + L1M4 LINE L1 2359 3508 -3136 1532 160 143 80 chr13 55378478 55378904 -46494265 + MLT2B1 LTR ERVL 1 453 -67 297 128 0 0 chr13 55378910 55378957 -46494212 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 272 302 8 8 chr13 55379000 55379129 -46494040 + L1M4 LINE L1 3532 3660 -2984 383 297 30 23 chr13 55379130 55379393 -46493776 + L1MCc LINE L1 19 283 -6140 1697 175 25 20 chr13 55379723 55380078 -46493091 + L1MA9 LINE L1 5895 6251 -61 428 301 57 24 chr13 55380257 55380466 -46492703 + L1MCc LINE L1 1023 1238 -5185 1220 263 89 33 chr13 55380539 55381170 -46491999 - L1M4 LINE L1 -2213 4744 4079 1138 246 31 57 chr13 55381179 55381667 -46491502 - L1M4 LINE L1 -5179 1680 1206 338 323 39 7 chr13 55381734 55381889 -46491280 - L1M4 LINE L1 -5667 1188 1029 326 287 49 54 chr13 55382278 55382501 -46490668 - L1M4 LINE L1 -6569 290 69 332 353 13 0 chr13 55382579 55382729 -46490440 + MERVL LTR ERVL 4452 4603 -882 1364 213 43 56 chr13 55382882 55383277 -46489892 - MLT1B LTR MaLR 0 390 1 423 319 72 54 chr13 55383874 55384247 -46488922 + LTR16A1 LTR ERVL 58 437 -20 22 56 0 0 chr13 55386128 55386164 -46487005 + AT_rich Low_complexity Low_complexity 1 36 0 319 179 0 24 chr13 55386669 55386753 -46486416 + (TA)n Simple_repeat Simple_repeat 1 82 0 246 197 30 15 chr13 55386766 55386832 -46486337 - L1MC4 LINE L1 -1340 6702 6636 300 111 0 0 chr13 55386834 55386879 -46486290 + (CA)n Simple_repeat Simple_repeat 2 46 0 512 320 40 20 chr13 55387712 55387912 -46485257 - L3 LINE CR1 -604 973 770 672 19 19 39 chr13 55388004 55388107 -46485062 + (TTTC)n Simple_repeat Simple_repeat 2 102 0 1878 143 86 17 chr13 55388108 55388458 -46484711 - MER57A LTR ERV1 -28 375 2 369 150 0 0 chr13 55388459 55388519 -46484650 - MER57A-int LTR ERV1 -6 7531 7472 2381 140 12 9 chr13 55388675 55389096 -46484073 - L1MA8 LINE L1 -6 6285 5864 222 171 0 0 chr13 55389136 55389177 -46483992 + (CATA)n Simple_repeat Simple_repeat 2 42 0 872 305 116 24 chr13 55390504 55391309 -46481860 - L2 LINE L2 -40 3273 2391 22 0 0 0 chr13 55392444 55392466 -46480703 + AT_rich Low_complexity Low_complexity 1 22 0 1853 304 94 41 chr13 55392497 55393378 -46479791 + L1M4 LINE L1 9 936 -5923 1862 92 4 8 chr13 55393603 55393864 -46479305 + AluSq SINE Alu 52 311 -2 1645 249 65 71 chr13 55394174 55395338 -46477831 + L1M4 LINE L1 1213 2326 -4633 283 185 12 37 chr13 55395509 55395590 -46477579 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 473 258 31 0 chr13 55395590 55395718 -46477451 + MLT1C LTR MaLR 6 137 -253 9245 86 6 18 chr13 55395718 55397834 -46475335 - L1PA7 LINE L1 -1 6153 4051 19681 118 2 21 chr13 55397834 55400991 -46472178 + L1PA7 LINE L1 931 4030 -2116 936 217 58 100 chr13 55400991 55401350 -46471819 + MLT1C LTR MaLR 121 464 -3 1755 200 35 32 chr13 55401514 55401884 -46471285 - MLT1B LTR MaLR 0 390 20 966 268 43 27 chr13 55402042 55402370 -46470799 + MLT1D LTR MaLR 150 482 -23 401 138 0 15 chr13 55402402 55402467 -46470702 - MLT1C LTR MaLR 0 467 404 2789 179 33 7 chr13 55402494 55403037 -46470132 + L1MB2 LINE L1 5614 6170 -1 1389 242 43 18 chr13 55403096 55403493 -46469676 - MLT1C LTR MaLR -50 417 11 678 275 38 36 chr13 55403557 55404074 -46469095 + L1M4 LINE L1 2683 3204 -3753 422 260 0 0 chr13 55404075 55404179 -46468990 + L1M4 LINE L1 5497 5600 -1357 321 219 0 0 chr13 55404189 55404262 -46468907 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 1164 252 18 58 chr13 55404264 55404712 -46468457 + L1M4 LINE L1 5604 6033 -924 243 88 0 0 chr13 55406279 55406313 -46466856 + (CA)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chr13 55406777 55406809 -46466360 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chr13 55407768 55407796 -46465373 + AT_rich Low_complexity Low_complexity 1 28 0 33 66 0 0 chr13 55407905 55407966 -46465203 + AT_rich Low_complexity Low_complexity 1 61 0 214 359 94 28 chr13 55408829 55409041 -46464128 + MIR SINE MIR 34 259 -3 237 33 0 0 chr13 55409722 55409752 -46463417 + (TG)n Simple_repeat Simple_repeat 1 30 0 33 75 0 11 chr13 55409958 55409986 -46463183 + AT_rich Low_complexity Low_complexity 1 28 -64 1775 160 4 0 chr13 55409986 55410267 -46462902 + AluSx SINE Alu 1 282 -30 33 75 0 11 chr13 55410267 55410331 -46462838 + AT_rich Low_complexity Low_complexity 28 92 0 45 96 0 0 chr13 55411085 55411221 -46461948 + AT_rich Low_complexity Low_complexity 1 136 0 210 118 0 0 chr13 55411751 55411785 -46461384 + (T)n Simple_repeat Simple_repeat 1 34 0 1354 192 91 53 chr13 55411875 55412291 -46460878 + MSTB1 LTR MaLR 1 432 0 238 318 0 0 chr13 55412409 55412475 -46460694 - MLT1I LTR MaLR -276 133 68 817 194 71 0 chr13 55412725 55412880 -46460289 + LTR40b LTR ERVL 1 166 -296 475 295 26 19 chr13 55413000 55413268 -46459901 - L1M4 LINE L1 -3506 2640 2371 24 0 0 0 chr13 55413937 55413961 -46459208 + AT_rich Low_complexity Low_complexity 1 24 0 444 19 0 0 chr13 55414467 55414520 -46458649 + (TA)n Simple_repeat Simple_repeat 1 53 0 1252 208 90 5 chr13 55414551 55414951 -46458218 - Charlie5 DNA MER1_type 0 2623 2190 251 261 0 8 chr13 55415024 55415143 -46458026 + GA-rich Low_complexity Low_complexity 3 120 0 245 295 77 60 chr13 55415526 55415709 -46457460 + HAL1 LINE L1 1458 1643 -864 1809 106 13 74 chr13 55415764 55416076 -46457093 + AluSc SINE Alu 1 293 -16 26 88 0 0 chr13 55416555 55416623 -46456546 + AT_rich Low_complexity Low_complexity 1 68 0 204 228 0 0 chr13 55416734 55416791 -46456378 + T-rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr13 55420240 55420261 -46452908 + AT_rich Low_complexity Low_complexity 1 21 0 2008 123 10 3 chr13 55420263 55420565 -46452604 + AluSq SINE Alu 1 304 -9 245 51 26 0 chr13 55421142 55421181 -46451988 + (TG)n Simple_repeat Simple_repeat 2 41 0 213 241 11 103 chr13 55421196 55421283 -46451886 + L2 LINE L2 2688 2766 -548 260 103 0 0 chr13 55421389 55421428 -46451741 + L1MCa LINE L1 2201 2239 -4187 959 117 0 0 chr13 55421444 55421572 -46451597 + AluSg/x SINE Alu 162 289 -23 920 205 82 75 chr13 55421585 55422066 -46451103 + L1MCa LINE L1 2345 2811 -3615 5580 150 40 1 chr13 55422112 55423547 -46449622 - L1PA14 LINE L1 -4 6157 4663 1716 243 41 42 chr13 55423569 55424347 -46448822 + L1MCa LINE L1 2877 3653 -2773 198 323 115 10 chr13 55424767 55424863 -46448306 + L2 LINE L2 3208 3313 0 189 107 0 0 chr13 55426054 55426082 -46447087 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 288 328 62 51 chr13 55426351 55426607 -46446562 + MER68 LTR ERV1 277 535 -27 1371 141 36 4 chr13 55426739 55426987 -46446182 + L1MB3 LINE L1 5919 6174 -9 21 57 0 0 chr13 55426988 55427023 -46446146 + AT_rich Low_complexity Low_complexity 1 35 0 334 328 0 25 chr13 55427727 55427849 -46445320 + MLT1I LTR MaLR 60 178 -231 527 224 8 67 chr13 55430813 55430947 -46442222 + FLAM_A SINE Alu 1 126 -7 2127 82 7 0 chr13 55430978 55431321 -46441848 - AluY SINE Alu 0 345 1 32 26 0 0 chr13 55431858 55431897 -46441272 + AT_rich Low_complexity Low_complexity 1 39 0 439 364 24 24 chr13 55431984 55432190 -46440979 - MIR SINE MIR -37 225 20 21 0 0 0 chr13 55433013 55433034 -46440135 + AT_rich Low_complexity Low_complexity 1 21 0 1318 227 59 12 chr13 55433042 55433447 -46439722 + L1MC4 LINE L1 7238 7661 -381 882 245 98 61 chr13 55433449 55433890 -46439279 - MLT1D LTR MaLR 0 505 49 2315 95 0 0 chr13 55434122 55434427 -46438742 - AluSq SINE Alu -8 305 1 330 138 0 0 chr13 55436062 55436120 -46437049 + (CA)n Simple_repeat Simple_repeat 2 59 0 183 205 0 0 chr13 55437013 55437052 -46436117 + (TTG)n Simple_repeat Simple_repeat 2 40 0 449 272 184 0 chr13 55437241 55437388 -46435781 + MER5A DNA MER1_type 15 188 -1 2511 237 38 29 chr13 55438517 55439252 -46433917 - L1MC4 LINE L1 0 8042 7301 1505 199 7 0 chr13 55440536 55440808 -46432361 - AluSx SINE Alu -38 274 1 1370 233 71 54 chr13 55440885 55441349 -46431820 - MLT1D LTR MaLR -4 501 30 249 237 0 82 chr13 55442013 55442110 -46431059 + L1MC4 LINE L1 6614 6702 -1340 258 266 51 0 chr13 55442154 55442233 -46430936 + L1MC4 LINE L1 6620 6702 -1340 241 206 82 0 chr13 55442217 55442290 -46430879 - L1MC4 LINE L1 -1340 6702 6624 * 198 71 0 0 chr13 55442290 55442318 -46430851 + (CA)n Simple_repeat Simple_repeat 2 29 0 1924 139 13 0 chr13 55442692 55442994 -46430175 + AluSx SINE Alu 1 306 -6 2109 91 0 7 chr13 55442996 55443355 -46429814 + AluSx SINE Alu 1 357 0 320 208 117 0 chr13 55443404 55443481 -46429688 + MIR SINE MIR 124 209 -53 270 0 0 0 chr13 55444220 55444250 -46428919 + (TG)n Simple_repeat Simple_repeat 2 31 0 7651 23 0 1 chr13 55445924 55447051 -46426118 + L1PA3 LINE L1 5031 6152 -3 372 323 35 40 chr13 55447426 55447627 -46425542 - L2 LINE L2 -5 3308 3109 3673 261 97 67 chr13 55448057 55450774 -46422395 + L1ME1 LINE L1 2111 4744 -1402 2077 226 102 63 chr13 55450774 55451569 -46421600 - LTR1B LTR ERV1 0 826 1 3673 261 97 67 chr13 55451569 55451824 -46421345 + L1ME1 LINE L1 4744 4990 -1156 2083 155 0 0 chr13 55451824 55452133 -46421036 + AluSx SINE Alu 2 310 -2 3673 261 97 67 chr13 55452133 55452230 -46420939 + L1ME1 LINE L1 4990 5274 -872 719 223 173 97 chr13 55452295 55452757 -46420412 + L1ME1 LINE L1 5439 5935 -229 921 143 0 0 chr13 55452765 55452898 -46420271 + AluSx SINE Alu 5 137 -175 6596 150 18 23 chr13 55452905 55454079 -46419090 + L1P LINE L1 11 1178 -4968 7853 68 2 3 chr13 55454086 55455886 -46417283 + L1PA6 LINE L1 4335 6141 -13 186 43 0 0 chr13 55455891 55455914 -46417255 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr13 55455917 55455939 -46417230 + AT_rich Low_complexity Low_complexity 1 22 0 963 166 0 0 chr13 55455939 55456121 -46417048 + AluSx SINE Alu 134 315 0 442 278 64 60 chr13 55456121 55456355 -46416814 + L1ME1 LINE L1 5928 6162 -4 293 54 0 0 chr13 55456422 55456459 -46416710 - MADE1 DNA Mariner -36 44 8 1887 167 23 0 chr13 55458194 55458499 -46414670 + AluSx SINE Alu 1 312 0 993 182 96 93 chr13 55458630 55458650 -46414519 + LTR52 LTR ERVL 1 19 -402 2428 60 0 0 chr13 55458650 55458952 -46414217 - AluY SINE Alu -9 302 1 993 182 96 93 chr13 55458952 55459349 -46413820 + LTR52 LTR ERVL 19 419 -2 513 208 46 8 chr13 55459350 55459480 -46413689 + LTR52-int LTR ERVL 3 137 -3419 1747 233 16 88 chr13 55459480 55459960 -46413209 + HERVL74 LTR ERVL 1600 2042 -3643 2800 196 138 28 chr13 55459960 55460704 -46412465 - LTR1B LTR ERV1 0 826 1 1747 233 16 88 chr13 55460704 55460733 -46412436 + HERVL74 LTR ERVL 2042 2072 -3613 372 247 0 0 chr13 55460884 55460965 -46412204 + LTR52 LTR ERVL 306 386 -35 357 189 11 22 chr13 55462114 55462204 -46410965 - L1MA10 LINE L1 -2 6332 6244 497 266 38 64 chr13 55462280 55462547 -46410622 + MLT1G1 LTR MaLR 61 320 -275 220 191 0 0 chr13 55462547 55462589 -46410580 + GA-rich Low_complexity Low_complexity 2 43 0 443 236 211 37 chr13 55464094 55464341 -46408828 + MLT1G LTR MaLR 20 310 -239 1192 241 47 66 chr13 55465542 55465907 -46407262 - MLT1A1 LTR MaLR -7 358 1 27 81 0 0 chr13 55466103 55466165 -46407004 + AT_rich Low_complexity Low_complexity 1 62 0 1275 302 49 9 chr13 55467018 55467542 -46405627 + L2 LINE L2 2771 3311 -2 6099 125 89 69 chr13 55467724 55468964 -46404205 - pTR5 LTR ERV1 0 2438 1174 5640 107 0 6 chr13 55469036 55469860 -46403309 - L1PA13 LINE L1 -4 6159 5341 2228 188 50 2 chr13 55469857 55470335 -46402834 + L1PA13 LINE L1 4856 5356 -790 * 228 297 74 65 chr13 55471095 55471324 -46401845 - L1MC/D LINE L1 -1884 5924 5694 260 315 56 6 chr13 55471368 55471546 -46401623 - L1P LINE L1 -748 5398 5212 227 287 23 0 chr13 55472077 55472164 -46401005 - L1MC4 LINE L1 -1339 6703 6615 605 328 29 13 chr13 55472452 55472690 -46400479 + MIR SINE MIR 17 258 -4 22 70 0 0 chr13 55473215 55473258 -46399911 + AT_rich Low_complexity Low_complexity 1 43 0 41 21 0 0 chr13 55473746 55473794 -46399375 + AT_rich Low_complexity Low_complexity 1 48 0 190 0 67 0 chr13 55474245 55474275 -46398894 + (TA)n Simple_repeat Simple_repeat 2 33 0 192 158 0 0 chr13 55474837 55474875 -46398294 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 746 176 57 50 chr13 55475398 55475557 -46397612 + FRAM SINE Alu 1 160 -6 24 0 0 0 chr13 55475557 55475581 -46397588 + AT_rich Low_complexity Low_complexity 1 24 0 285 266 0 0 chr13 55476001 55476080 -46397089 + A-rich Low_complexity Low_complexity 1 79 0 205 371 8 24 chr13 55476183 55476307 -46396862 + MIR SINE MIR 16 137 -71 213 287 82 41 chr13 55478115 55478237 -46394932 + L2 LINE L2 3103 3229 -84 239 289 13 26 chr13 55478289 55478365 -46394804 + L2 LINE L2 3234 3308 -5 21 0 0 0 chr13 55480193 55480214 -46392955 + AT_rich Low_complexity Low_complexity 1 21 0 200 255 0 0 chr13 55480508 55480555 -46392614 + GA-rich Low_complexity Low_complexity 3 49 0 1233 230 35 18 chr13 55482498 55482781 -46390388 - AluJo SINE Alu -13 289 2 207 272 11 22 chr13 55483291 55483383 -46389786 + (CATATA)n Simple_repeat Simple_repeat 5 95 0 230 308 90 54 chr13 55483443 55483592 -46389577 + MIR3 SINE MIR 4 155 -53 3892 195 8 27 chr13 55484280 55485050 -46388119 + L1M4c LINE L1 1199 1953 -5614 393 191 67 11 chr13 55485150 55485239 -46387930 + L1M4c LINE L1 1 94 -7471 2038 144 3 0 chr13 55485289 55485587 -46387582 + AluSx SINE Alu 1 299 -13 2640 160 38 28 chr13 55485587 55486117 -46387052 + L1M4c LINE L1 2625 3159 -4408 6308 92 2 15 chr13 55486117 55486479 -46386690 + L1PA11 LINE L1 4653 5018 -1156 1902 60 16 12 chr13 55486479 55486729 -46386440 + AluSp SINE Alu 57 307 -6 6308 92 2 15 chr13 55486729 55487906 -46385263 + L1PA11 LINE L1 5018 6173 -1 1989 300 22 31 chr13 55488496 55489177 -46383992 + L1MB3 LINE L1 672 2006 -5559 2841 115 63 8 chr13 55489177 55489654 -46383515 + L1PB2 LINE L1 5642 6144 -7 527 137 32 24 chr13 55489671 55489795 -46383374 + GA-rich Low_complexity Low_complexity 2 126 0 2036 99 53 0 chr13 55489798 55490080 -46383089 - AluSq SINE Alu -14 299 3 426 153 0 0 chr13 55490096 55490168 -46383001 - L1MB2 LINE L1 -17 6154 6083 4186 157 31 22 chr13 55490170 55490848 -46382321 - L1PA14 LINE L1 -2 6159 5489 1820 113 4 8 chr13 55490848 55491114 -46382055 - AluSx SINE Alu 0 312 48 4186 157 31 22 chr13 55491114 55491993 -46381176 - L1PA14 LINE L1 -672 5489 4530 412 179 0 13 chr13 55491996 55492074 -46381095 + THE1C LTR MaLR 1 77 -351 628 169 59 23 chr13 55492142 55492288 -46380881 + THE1C LTR MaLR 237 375 0 1943 112 192 3 chr13 55492291 55492629 -46380540 + THE1C-int LTR MaLR 4 405 -1175 505 191 38 19 chr13 55492630 55492742 -46380427 + MSTA LTR MaLR 248 428 0 736 251 0 5 chr13 55492742 55492949 -46380220 - L1PA14 LINE L1 -1615 4531 4326 841 162 69 40 chr13 55492951 55493124 -46380045 + THE1C LTR MaLR 198 375 0 8572 139 61 41 chr13 55493124 55494673 -46378496 + THE1C-int LTR MaLR 1 1580 0 2346 117 35 16 chr13 55494673 55495041 -46378128 + THE1C LTR MaLR 1 375 0 1038 198 53 0 chr13 55495041 55495288 -46377881 + L1MB3 LINE L1 3365 3624 -3943 1224 139 27 0 chr13 55495288 55495475 -46377694 + AluSg/x SINE Alu 121 312 0 266 159 14 14 chr13 55495486 55495555 -46377614 + L1M4 LINE L1 5094 5162 -984 7655 245 41 41 chr13 55495575 55495747 -46377422 + L1MB3 LINE L1 3636 3806 -3796 2022 137 0 0 chr13 55495747 55496031 -46377138 - AluSg SINE Alu -18 292 9 7655 245 41 41 chr13 55496031 55499274 -46373895 + L1MB3 LINE L1 3806 7022 -580 8783 231 85 30 chr13 55499285 55502999 -46370170 + L1M2 LINE L1 10 3931 -2917 3239 114 92 27 chr13 55502984 55503569 -46369600 + L1MA4A LINE L1 5381 6003 -300 * 910 252 13 50 chr13 55503576 55503896 -46369273 + L1M1 LINE L1 3511 3822 -3743 1091 181 40 22 chr13 55503896 55504173 -46368996 + L1MA4A LINE L1 6015 6296 -7 2830 189 17 9 chr13 55504189 55504507 -46368662 + L1MB3 LINE L1 7012 7339 -263 1848 161 3 0 chr13 55504507 55504798 -46368371 + AluJo SINE Alu 7 298 -14 2830 189 17 9 chr13 55504798 55505057 -46368112 + L1MB3 LINE L1 7339 7594 -8 282 29 0 0 chr13 55505108 55505143 -46368026 + (TG)n Simple_repeat Simple_repeat 2 36 0 36 0 0 0 chr13 55505197 55505233 -46367936 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 55505698 55505722 -46367447 + AT_rich Low_complexity Low_complexity 1 24 0 457 250 214 10 chr13 55506705 55506897 -46366272 + MIR SINE MIR 3 233 -29 235 244 44 52 chr13 55507291 55507329 -46365840 - L1MA10 LINE L1 -21 6313 6276 1682 212 64 82 chr13 55507329 55507941 -46365228 - L1ME1 LINE L1 -45 6190 5590 1222 280 52 24 chr13 55507941 55508687 -46364482 - L1ME1 LINE L1 -2553 3662 2896 313 320 16 24 chr13 55508704 55508829 -46364340 - L1ME1 LINE L1 -4706 1509 1386 3140 256 74 36 chr13 55508912 55510108 -46363061 - L1ME1 LINE L1 -5103 1293 53 204 40 0 0 chr13 55513111 55513136 -46360033 + (GA)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr13 55513420 55513472 -46359697 + AT_rich Low_complexity Low_complexity 1 52 0 538 165 85 40 chr13 55514004 55514180 -46358989 + MER53 DNA DNA 5 188 -1 480 35 0 0 chr13 55514753 55514811 -46358358 + (TC)n Simple_repeat Simple_repeat 1 58 0 21 0 0 0 chr13 55515198 55515219 -46357950 + AT_rich Low_complexity Low_complexity 1 21 0 783 217 42 24 chr13 55515713 55515925 -46357244 + L1MD2 LINE L1 6127 6342 -17 4118 162 53 6 chr13 55516105 55516894 -46356275 + LTR1B LTR ERV1 1 826 0 424 203 14 0 chr13 55516988 55517062 -46356107 - Tigger5 DNA MER2_type 0 2323 2249 245 232 0 18 chr13 55517091 55517147 -46356022 - Tigger5 DNA MER2_type -4 2319 2265 401 158 0 81 chr13 55517280 55517380 -46355789 + L1MA7 LINE L1 6160 6242 -49 828 130 7 29 chr13 55517403 55517541 -46355628 - FRAM SINE Alu -3 173 39 233 85 0 102 chr13 55517541 55517600 -46355569 + L1MA7 LINE L1 6239 6291 0 683 249 75 40 chr13 55517635 55517836 -46355333 + MER20 DNA MER1_type 3 210 -9 3255 139 32 0 chr13 55518054 55518578 -46354591 - L1PA15 LINE L1 0 6165 5625 1340 123 10 0 chr13 55518578 55518782 -46354387 + L1PA15 LINE L1 5400 5605 -560 10406 230 20 8 chr13 55518782 55520330 -46352839 - L1PA13 LINE L1 -2046 5538 3928 360 0 0 0 chr13 55520330 55520370 -46352799 + (TG)n Simple_repeat Simple_repeat 1 40 0 10406 230 20 8 chr13 55520370 55521528 -46351641 - L1PA13 LINE L1 -3656 3928 2786 2236 74 3 3 chr13 55521530 55521815 -46351354 - AluY SINE Alu -26 285 1 3863 287 113 42 chr13 55521818 55523967 -46349202 - L1PA13 LINE L1 -5273 2308 8 933 324 43 6 chr13 55524383 55524814 -46348355 - MLT1J LTR MaLR -11 500 1 532 260 0 8 chr13 55524951 55525078 -46348091 + LTR45B LTR ERV1 3 128 -361 1940 195 15 23 chr13 55525144 55525626 -46347543 + LTR22 LTR ERVK 1 458 0 5635 113 30 45 chr13 55525628 55526544 -46346625 + HERVK22 LTR ERVK 3 904 -5933 20909 115 10 3 chr13 55526545 55529699 -46343470 + HERVK22 LTR ERVK 2333 6837 0 1996 221 67 6 chr13 55529699 55530179 -46342990 + LTR22 LTR ERVK 1 509 0 320 247 137 34 chr13 55530259 55530405 -46342764 + LTR45B LTR ERV1 226 386 -103 * 637 192 40 8 chr13 55530391 55530516 -46342653 + LTR45B LTR ERV1 312 440 -49 2404 88 0 0 chr13 55530536 55530843 -46342326 + AluY SINE Alu 1 307 -4 2018 173 20 2 chr13 55530844 55531391 -46341778 + L1PB4 LINE L1 5177 5778 -378 243 179 36 71 chr13 55531420 55531504 -46341665 + L1MC4 LINE L1 6615 6695 -1347 234 250 0 0 chr13 55531504 55531560 -46341609 + (TATATG)n Simple_repeat Simple_repeat 6 61 0 1680 145 57 14 chr13 55531561 55531858 -46341311 + L1PB4 LINE L1 5839 6148 -8 484 221 153 0 chr13 55531862 55531993 -46341176 + MER97a DNA MER1_type? 484 634 -260 313 175 32 16 chr13 55532004 55532067 -46341102 + LTR45 LTR ERV1 460 523 -2 1504 231 16 24 chr13 55532782 55533159 -46340010 - MLT1A2 LTR MaLR 0 374 1 24 53 0 0 chr13 55533428 55533466 -46339703 + AT_rich Low_complexity Low_complexity 1 38 0 625 225 33 88 chr13 55533510 55533586 -46339583 - MER106A DNA MER1_type -4 232 153 2372 64 14 0 chr13 55533586 55533883 -46339286 - AluY SINE Alu -10 301 1 625 225 33 88 chr13 55533883 55533970 -46339199 - MER106A DNA MER1_type -83 153 84 2990 163 65 15 chr13 55533970 55534553 -46338616 + LTR9 LTR ERV1 1 612 0 625 225 33 88 chr13 55534553 55534628 -46338541 - MER106A DNA MER1_type -152 84 6 261 255 62 58 chr13 55534955 55535163 -46338006 - L1MC5 LINE L1 -451 7510 7302 243 0 0 0 chr13 55535328 55535355 -46337814 + (CA)n Simple_repeat Simple_repeat 2 28 0 1104 236 132 72 chr13 55535411 55535827 -46337342 - MLT2B1 LTR ERVL -72 448 8 710 292 67 62 chr13 55536156 55536591 -46336578 - L1MC4a LINE L1 -831 6977 6541 278 256 13 26 chr13 55536734 55536812 -46336357 + L2 LINE L2 2194 2270 -1044 303 265 0 0 chr13 55536860 55536928 -46336241 - L2 LINE L2 -18 3295 3228 238 247 39 0 chr13 55537088 55537165 -46336004 - L1MEd LINE L1 -5361 758 679 2023 112 25 0 chr13 55537933 55538218 -46334951 + AluSg SINE Alu 1 292 -18 565 297 55 50 chr13 55538231 55538457 -46334712 - L1ME LINE L1 -338 5824 5601 1768 152 55 25 chr13 55538457 55538819 -46334350 - THE1C LTR MaLR 0 375 3 565 297 55 50 chr13 55538819 55539041 -46334128 - L1ME LINE L1 -561 5601 5372 439 273 67 14 chr13 55539269 55539478 -46333691 - L1ME LINE L1 -981 5165 4946 231 337 0 0 chr13 55540067 55540150 -46333019 - L1ME LINE L1 -1298 4848 4766 294 295 285 0 chr13 55540170 55540370 -46332799 + MIR SINE MIR 3 259 -3 5486 73 23 4 chr13 55540375 55541127 -46332042 + MER4E LTR ERV1 1 766 0 3172 90 68 28 chr13 55541131 55541630 -46331539 + MER41A LTR ERV1 1 519 -35 618 311 76 35 chr13 55541791 55542250 -46330919 - L1ME LINE L1 -1562 4584 4107 279 316 39 16 chr13 55542421 55542672 -46330497 - L1ME LINE L1 -2275 3871 3617 2196 116 0 0 chr13 55542699 55542993 -46330176 + AluSq SINE Alu 1 294 -19 313 265 54 14 chr13 55543508 55543655 -46329514 - L1ME LINE L1 -3654 2492 2340 21 0 0 0 chr13 55543747 55543768 -46329401 + AT_rich Low_complexity Low_complexity 1 21 0 459 180 58 101 chr13 55543909 55544048 -46329121 + MER63 DNA MER1_type 7 765 -297 287 309 10 52 chr13 55544086 55544183 -46328986 + L2 LINE L2 3179 3271 -1 271 378 37 6 chr13 55544453 55544617 -46328552 + MIR SINE MIR 81 249 -13 385 282 94 0 chr13 55544801 55544918 -46328251 - MLT1A1 LTR MaLR -22 527 400 23 68 0 0 chr13 55546541 55546585 -46326584 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr13 55546689 55546714 -46326455 + AT_rich Low_complexity Low_complexity 1 25 0 4237 221 73 41 chr13 55547573 55547928 -46325241 - Charlie1a DNA MER1_type -1308 1453 1111 1572 174 25 0 chr13 55547928 55548203 -46324966 - AluJo SINE Alu -30 282 1 4237 221 73 41 chr13 55548203 55549224 -46323945 - Charlie1a DNA MER1_type -1650 1111 32 45 69 0 0 chr13 55549528 55549615 -46323554 + AT_rich Low_complexity Low_complexity 1 87 0 1753 224 12 0 chr13 55549630 55549973 -46323196 - MLT1A1 LTR MaLR -18 347 1 205 205 0 0 chr13 55550106 55550145 -46323024 + (TA)n Simple_repeat Simple_repeat 2 40 0 1232 196 40 112 chr13 55550185 55550587 -46322582 + MLT1A2 LTR MaLR 1 373 -1 21 57 0 0 chr13 55550699 55550734 -46322435 + AT_rich Low_complexity Low_complexity 1 35 0 253 333 53 15 chr13 55550934 55551066 -46322103 - L2 LINE L2 -17 3296 3160 1402 252 52 22 chr13 55551079 55551598 -46321571 + MLT1F LTR MaLR 9 534 -8 774 230 54 5 chr13 55551744 55551966 -46321203 + MER96B DNA MER1_type? 180 412 -5 439 299 68 7 chr13 55552167 55552314 -46320855 + MIR SINE MIR 59 214 -48 371 274 102 38 chr13 55552528 55552685 -46320484 - MIR SINE MIR -94 168 2 30 45 0 0 chr13 55552972 55553016 -46320153 + AT_rich Low_complexity Low_complexity 1 44 0 1523 109 137 16 chr13 55553016 55553272 -46319897 - AluSg SINE Alu -13 287 1 23 54 0 0 chr13 55553494 55553531 -46319638 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr13 55554901 55554952 -46318217 + AT_rich Low_complexity Low_complexity 1 51 0 29 0 0 0 chr13 55556423 55556452 -46316717 + AT_rich Low_complexity Low_complexity 1 29 0 1561 203 24 71 chr13 55556468 55556877 -46316292 - MLT1B LTR MaLR 0 390 1 686 274 20 30 chr13 55556913 55557209 -46315960 - L1ME1 LINE L1 -4 6162 5870 1084 244 82 53 chr13 55557284 55557870 -46315299 - L1ME LINE L1 -2839 3241 2639 449 229 77 83 chr13 55557936 55558095 -46315074 - L1ME LINE L1 -3552 2528 2370 2067 108 4 0 chr13 55558095 55558374 -46314795 + AluSq SINE Alu 1 280 -33 231 88 0 0 chr13 55558374 55558408 -46314761 + (CA)n Simple_repeat Simple_repeat 1 34 0 449 229 77 83 chr13 55558408 55558574 -46314595 - L1ME LINE L1 -3708 2372 2204 1022 183 97 23 chr13 55558593 55558850 -46314319 - Tigger3(Golem) DNA MER2_type 0 3037 2762 202 114 0 29 chr13 55559145 55559180 -46313989 + (TG)n Simple_repeat Simple_repeat 2 35 0 229 211 118 0 chr13 55559187 55559263 -46313906 - L1ME LINE L1 -4579 1682 1598 323 287 57 68 chr13 55559266 55559520 -46313649 - L1ME LINE L1 -4692 1390 1271 786 274 121 45 chr13 55559565 55560352 -46312817 - L1ME LINE L1 -4942 1088 357 288 0 0 0 chr13 55560487 55560519 -46312650 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 703 287 42 33 chr13 55560583 55560890 -46312279 + HAL1 LINE L1 1537 1846 -661 283 240 95 50 chr13 55560897 55561076 -46312093 + HAL1 LINE L1 1895 2081 -426 567 118 235 0 chr13 55561270 55561372 -46311797 + AluSp/q SINE Alu 169 294 -19 21 36 0 0 chr13 55564252 55564280 -46308889 + AT_rich Low_complexity Low_complexity 1 28 0 252 175 10 97 chr13 55565840 55565943 -46307226 - Charlie7 DNA MER1_type -61 2551 2458 793 328 69 21 chr13 55565957 55566624 -46306545 - Charlie7 DNA MER1_type -1905 707 9 466 101 0 0 chr13 55566927 55566996 -46306173 + L1PA8 LINE L1 6091 6159 -13 186 43 0 0 chr13 55567705 55567728 -46305441 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1362 176 35 145 chr13 55569100 55569590 -46303579 - LTR27 LTR ERV1 0 636 201 376 203 14 0 chr13 55569591 55569660 -46303509 - LTR28 LTR ERV1 -950 70 1 1787 184 30 33 chr13 55569702 55570067 -46303102 + THE1B LTR MaLR 1 364 0 10930 116 9 1 chr13 55570071 55571628 -46301541 + THE1A-int LTR MaLR 11 1580 0 1956 157 11 17 chr13 55571628 55571985 -46301184 + THE1A LTR MaLR 1 355 0 22 70 0 0 chr13 55572986 55573029 -46300140 + AT_rich Low_complexity Low_complexity 1 43 0 422 289 65 65 chr13 55573122 55573368 -46299801 + MLT1I LTR MaLR 24 269 -140 2124 106 0 20 chr13 55573465 55573766 -46299403 - AluSc SINE Alu -14 295 1 1286 223 34 78 chr13 55573861 55574347 -46298822 + MLT1D LTR MaLR 24 474 -31 209 370 0 74 chr13 55574428 55574536 -46298633 - L2 LINE L2 -10 3262 3163 379 233 92 0 chr13 55574831 55574951 -46298218 + AluJo SINE Alu 1 131 -171 674 144 20 26 chr13 55574951 55575104 -46298065 + GA-rich Low_complexity Low_complexity 2 153 0 218 114 0 23 chr13 55575101 55575145 -46298024 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 * 836 175 0 0 chr13 55575154 55575280 -46297889 + AluJo SINE Alu 131 256 -56 254 312 83 0 chr13 55579365 55579474 -46293695 - L2 LINE L2 0 3313 3196 308 284 12 68 chr13 55579633 55579795 -46293374 - MLT1J LTR MaLR -33 478 326 765 218 160 8 chr13 55579826 55580088 -46293081 - MER33 DNA MER1_type -22 302 1 356 386 37 0 chr13 55580151 55580340 -46292829 + MER115 DNA AcHobo 10 205 -488 1136 306 39 14 chr13 55580408 55580771 -46292398 + MER115 DNA AcHobo 312 683 -10 431 337 26 48 chr13 55580781 55581054 -46292115 - MLT1J LTR MaLR -244 267 1 246 180 20 0 chr13 55581783 55581833 -46291336 - LTR40a LTR ERVL -10 509 459 245 245 70 42 chr13 55581994 55582137 -46291032 - L1MEc LINE L1 -4016 2380 2234 504 163 7 78 chr13 55582137 55582278 -46290891 - MSTB2 LTR MaLR -12 445 315 22 0 0 0 chr13 55584385 55584407 -46288762 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 55585117 55585141 -46288028 + AT_rich Low_complexity Low_complexity 1 24 0 402 339 48 21 chr13 55585762 55585951 -46287218 + MIR SINE MIR 18 211 -51 26 0 0 0 chr13 55587651 55587677 -46285492 + AT_rich Low_complexity Low_complexity 1 26 0 297 0 0 0 chr13 55587851 55587884 -46285285 + (TG)n Simple_repeat Simple_repeat 2 34 0 313 218 58 23 chr13 55588147 55588234 -46284935 + MIR SINE MIR 75 164 -98 1010 317 94 53 chr13 55588269 55589000 -46284169 + MER45C DNA AcHobo 10 770 -183 830 191 72 5 chr13 55589113 55589275 -46283894 + MER45B DNA AcHobo 713 894 -687 207 0 0 0 chr13 55589275 55589298 -46283871 + (TAA)n Simple_repeat Simple_repeat 2 24 0 830 191 72 5 chr13 55589298 55589344 -46283825 + MER45B DNA AcHobo 894 935 -105 234 0 0 0 chr13 55589365 55589391 -46283778 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1956 131 0 3 chr13 55589394 55589676 -46283493 - AluSq SINE Alu -31 282 2 2200 96 4 0 chr13 55589702 55589983 -46283186 - AluSp SINE Alu -28 285 4 439 250 0 0 chr13 55590007 55590099 -46283070 + MER45B DNA AcHobo 949 1040 0 278 284 12 0 chr13 55590954 55591035 -46282134 + MIR SINE MIR 73 154 -108 403 233 67 0 chr13 55591351 55591441 -46281728 - MIR3 SINE MIR -2 206 111 314 273 36 48 chr13 55591677 55591842 -46281327 - L2 LINE L2 -131 3182 3020 335 314 186 6 chr13 55591908 55592080 -46281089 - L2 LINE L2 -527 2787 2585 478 237 44 0 chr13 55592085 55592199 -46280970 - MER91C DNA MER1_type -10 130 12 228 35 0 0 chr13 55594320 55594349 -46278820 + (TG)n Simple_repeat Simple_repeat 2 30 0 30 45 0 0 chr13 55594722 55594766 -46278403 + AT_rich Low_complexity Low_complexity 1 44 0 228 67 0 0 chr13 55597726 55597756 -46275413 + (TC)n Simple_repeat Simple_repeat 1 30 0 381 93 0 0 chr13 55597756 55597810 -46275359 + (TA)n Simple_repeat Simple_repeat 1 54 0 444 262 94 13 chr13 55598245 55598394 -46274775 + MLT1J1 LTR MaLR 1 161 -285 1905 139 7 4 chr13 55599175 55599456 -46273713 - AluSx SINE Alu -28 284 3 261 264 97 13 chr13 55600578 55600733 -46272436 - MER112 DNA MER1_type -88 172 5 2416 48 0 0 chr13 55602232 55602526 -46270643 - AluY SINE Alu -17 294 1 2054 103 0 0 chr13 55603095 55603408 -46269761 + AluSx SINE Alu 1 313 0 261 195 23 23 chr13 55604210 55604297 -46268872 + GA-rich Low_complexity Low_complexity 3 89 0 21 36 0 0 chr13 55604940 55604968 -46268201 + AT_rich Low_complexity Low_complexity 1 28 0 5796 144 89 22 chr13 55605197 55606350 -46266819 - Tigger3b DNA MER2_type 0 1231 2 222 304 18 0 chr13 55606419 55606475 -46266694 - MIR SINE MIR -154 108 52 193 379 24 32 chr13 55606629 55606753 -46266416 + MIR SINE MIR 18 140 -122 217 164 18 18 chr13 55608487 55608542 -46264627 + (TA)n Simple_repeat Simple_repeat 1 55 0 22 0 0 0 chr13 55608545 55608567 -46264602 + AT_rich Low_complexity Low_complexity 1 22 0 1883 122 17 0 chr13 55608961 55609249 -46263920 - AluSx SINE Alu -19 293 1 394 256 40 24 chr13 55609320 55609445 -46263724 - FLAM_A SINE Alu -6 127 1 715 11 0 0 chr13 55609792 55609879 -46263290 - L1PA2 LINE L1 -1 6154 6068 21 0 0 0 chr13 55611120 55611141 -46262028 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr13 55611494 55611525 -46261644 + (TG)n Simple_repeat Simple_repeat 2 32 0 1482 170 122 21 chr13 55612356 55612685 -46260484 + MLT1A1 LTR MaLR 4 365 0 232 250 83 42 chr13 55613937 55614057 -46259112 + L2 LINE L2 1735 1859 -1455 494 373 83 47 chr13 55614059 55614966 -46258203 + L2 LINE L2 1991 2929 -385 783 193 14 7 chr13 55615645 55615790 -46257379 - AluJb SINE Alu -30 282 137 201 336 26 95 chr13 55615952 55616068 -46257101 + L2 LINE L2 3158 3265 -7 341 186 69 39 chr13 55616784 55616886 -46256283 - MLT1J2 LTR MaLR -344 106 2 291 354 47 16 chr13 55619463 55619590 -46253579 + MIR SINE MIR 12 142 -120 374 352 75 47 chr13 55620520 55620733 -46252436 + MLT1K LTR MaLR 11 229 -359 236 260 26 0 chr13 55620872 55620949 -46252220 + GA-rich Low_complexity Low_complexity 1 79 0 25 0 0 0 chr13 55621000 55621025 -46252144 + AT_rich Low_complexity Low_complexity 1 25 0 262 309 41 8 chr13 55622442 55622565 -46250604 + MER117 DNA MER1_type 3 129 -68 1389 132 0 0 chr13 55622845 55623042 -46250127 - AluSg/x SINE Alu -29 283 87 444 19 0 0 chr13 55623069 55623122 -46250047 + (CA)n Simple_repeat Simple_repeat 2 54 0 1039 194 161 27 chr13 55623127 55623462 -46249707 + L1MA8 LINE L1 5909 6288 -3 31 58 0 0 chr13 55624206 55624258 -46248911 + AT_rich Low_complexity Low_complexity 1 52 0 241 370 55 0 chr13 55624489 55624635 -46248534 + MIR SINE MIR 59 212 -50 938 253 80 64 chr13 55624713 55625152 -46248017 + LTR16A1 LTR ERVL 12 457 0 22 70 0 0 chr13 55627516 55627559 -46245610 + AT_rich Low_complexity Low_complexity 1 43 0 273 261 108 15 chr13 55627825 55627955 -46245214 + MER69 DNA AcHobo 4 145 -1081 388 248 53 18 chr13 55627977 55628090 -46245079 + MER69 DNA AcHobo 700 816 -1710 190 349 79 13 chr13 55629030 55629182 -46243987 + MIR SINE MIR 101 262 0 1796 108 78 0 chr13 55629832 55630090 -46243079 - AluSg SINE Alu -20 290 13 1866 50 8 0 chr13 55631675 55631914 -46241255 - L1PA5 LINE L1 -1 6153 5913 1681 149 42 10 chr13 55632227 55632347 -46240822 + AluSx SINE Alu 1 116 -196 396 0 0 0 chr13 55632347 55632391 -46240778 + (CA)n Simple_repeat Simple_repeat 2 45 0 1681 149 42 10 chr13 55632391 55632558 -46240611 + AluSx SINE Alu 116 297 -15 1132 31 0 0 chr13 55633322 55633451 -46239718 + AluY SINE Alu 1 129 -182 710 298 52 30 chr13 55634834 55635200 -46237969 - MLT1J1 LTR MaLR -70 376 3 1916 142 62 75 chr13 55635306 55635707 -46237462 - MSTD LTR MaLR 0 396 1 499 101 0 38 chr13 55636908 55636987 -46236182 + MADE1 DNA Mariner 1 76 -4 617 330 50 45 chr13 55637021 55637421 -46235748 - MLT1J1 LTR MaLR -2 444 43 23 54 0 0 chr13 55638939 55638976 -46234193 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 55639061 55639106 -46234063 + AT_rich Low_complexity Low_complexity 1 45 0 296 319 21 21 chr13 55639207 55639301 -46233868 - MIR SINE MIR -70 138 45 3696 142 0 0 chr13 55640146 55640716 -46232453 + L1PA15 LINE L1 5587 6156 -9 222 272 44 88 chr13 55643298 55643434 -46229735 + L2 LINE L2 1234 1363 -1951 200 206 0 0 chr13 55643680 55643714 -46229455 + (CAT)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr13 55643755 55643784 -46229385 + (CA)n Simple_repeat Simple_repeat 2 30 0 842 333 124 40 chr13 55643847 55644908 -46228261 + L2 LINE L2 1639 2788 -526 212 276 132 0 chr13 55644903 55644979 -46228190 + MIR SINE MIR 158 243 -19 * 482 319 46 29 chr13 55645015 55645256 -46227913 + L2 LINE L2 2828 3072 -241 28 29 0 0 chr13 55645664 55645699 -46227470 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 55647313 55647335 -46225834 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 55648919 55648943 -46224226 + AT_rich Low_complexity Low_complexity 1 24 0 183 80 0 0 chr13 55649276 55649301 -46223868 + (TAA)n Simple_repeat Simple_repeat 3 27 0 307 344 0 16 chr13 55649364 55649486 -46223683 - MIR SINE MIR -108 154 35 1076 199 65 87 chr13 55699649 55699956 -46173213 - MLT1A1 LTR MaLR -6 359 60 1354 221 11 14 chr13 55699956 55700236 -46172933 + AluJo SINE Alu 3 281 -31 1076 199 65 87 chr13 55700236 55700295 -46172874 - MLT1A1 LTR MaLR -305 60 1 248 331 83 11 chr13 55700302 55700568 -46172601 + L1ME2 LINE L1 1156 1440 -4944 257 143 71 0 chr13 55700576 55700632 -46172537 - L1PB1 LINE L1 -2 6149 6090 1820 291 79 10 chr13 55700864 55701904 -46171265 + L1ME2 LINE L1 3963 5074 -1308 1525 179 60 113 chr13 55702164 55702399 -46170770 + L1MB5 LINE L1 5710 5956 -218 2295 132 14 0 chr13 55702399 55702755 -46170414 - L1PA13 LINE L1 -2 6161 5801 1525 179 60 113 chr13 55702755 55702877 -46170292 + L1MB5 LINE L1 5956 6037 -137 180 0 0 0 chr13 55702877 55702897 -46170272 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1525 179 60 113 chr13 55702897 55703023 -46170146 + L1MB5 LINE L1 6037 6168 -6 2107 255 21 54 chr13 55703041 55704015 -46169154 + L1ME2 LINE L1 5391 6334 -66 647 262 96 35 chr13 55704028 55704425 -46168744 + L1ME3A LINE L1 5527 5947 -223 26 30 0 0 chr13 55704883 55704916 -46168253 + AT_rich Low_complexity Low_complexity 1 33 0 2569 51 0 0 chr13 55705993 55706304 -46166865 + AluY SINE Alu 1 311 0 340 266 129 27 chr13 55706750 55706966 -46166203 + L1M4 LINE L1 494 936 -5710 4884 103 132 0 chr13 55706994 55707724 -46165445 + LTR12 LTR ERV1 1 826 0 237 188 34 26 chr13 55707771 55707888 -46165281 + CT-rich Low_complexity Low_complexity 3 120 0 2530 230 25 38 chr13 55707888 55708729 -46164440 + L1M4 LINE L1 816 1672 -4870 1282 266 55 12 chr13 55708732 55709334 -46163835 + L1M4 LINE L1 3316 3943 -2701 362 296 66 14 chr13 55709353 55709566 -46163603 + L1M4 LINE L1 5323 5546 -1098 19474 154 21 11 chr13 55709600 55712854 -46160315 + L1M1 LINE L1 7 3292 -4273 3276 212 12 1 chr13 55712870 55713604 -46159565 + L1M1 LINE L1 3624 4365 -3200 525 316 18 60 chr13 55717664 55717946 -46155223 + MLT1J LTR MaLR 229 498 -13 322 258 153 24 chr13 55718178 55718302 -46154867 + MIR SINE MIR 119 258 -4 2099 142 0 0 chr13 55720351 55720660 -46152509 + AluSg1 SINE Alu 1 309 0 296 323 54 11 chr13 55722316 55722409 -46150760 + L2 LINE L2 3175 3271 -1 252 100 0 0 chr13 55722456 55722496 -46150673 + (GA)n Simple_repeat Simple_repeat 1 40 0 180 208 21 42 chr13 55724215 55724263 -46148906 - L3b LINE CR1 -110 1473 1427 198 0 0 0 chr13 55725880 55725902 -46147267 + (T)n Simple_repeat Simple_repeat 1 22 0 2066 136 0 13 chr13 55726698 55727014 -46146155 + AluSx SINE Alu 1 312 0 385 91 0 0 chr13 55727491 55727546 -46145623 + L1PA3 LINE L1 6101 6155 0 1354 182 91 0 chr13 55727721 55727974 -46145195 + Tigger3(Golem) DNA MER2_type 2763 3038 0 213 39 0 0 chr13 55728123 55728149 -46145020 + (T)n Simple_repeat Simple_repeat 1 26 0 1329 223 72 53 chr13 55728149 55728526 -46144643 - MSTD LTR MaLR -12 384 1 360 289 99 93 chr13 55728559 55729115 -46144054 + L1M4 LINE L1 2173 2741 -3405 2426 50 0 3 chr13 55729115 55729412 -46143757 - AluY SINE Alu -15 296 1 360 289 99 93 chr13 55729412 55729903 -46143266 + L1M4 LINE L1 2741 3227 -2919 243 323 16 41 chr13 55730098 55730299 -46142870 - MIR SINE MIR -10 252 3 1331 102 0 0 chr13 55731466 55731642 -46141527 - AluSc SINE Alu -131 178 3 210 297 189 14 chr13 55731919 55732067 -46141102 + MIR SINE MIR 88 261 -1 24 0 0 0 chr13 55733051 55733075 -46140094 + AT_rich Low_complexity Low_complexity 1 24 0 235 335 61 30 chr13 55733407 55733604 -46139565 + L1ME LINE L1 2 204 -5866 778 261 114 68 chr13 55734234 55734953 -46138216 + L1ME LINE L1 421 1140 -4940 1261 128 5 0 chr13 55735309 55735513 -46137656 - L1MA5 LINE L1 -2 6298 6094 227 336 80 7 chr13 55735779 55735916 -46137253 + L2 LINE L2 3042 3188 -125 1830 292 96 53 chr13 55736369 55736396 -46136773 + HAL1 LINE L1 492 516 -1991 1663 122 91 28 chr13 55736396 55736682 -46136487 + AluSq SINE Alu 1 304 -9 1830 292 96 53 chr13 55736682 55738303 -46134866 + HAL1 LINE L1 516 2211 -296 248 286 171 29 chr13 55738521 55738696 -46134473 - MIR SINE MIR -49 213 14 264 133 0 0 chr13 55739590 55739635 -46133534 - L1MA3 LINE L1 0 6305 6261 * 352 131 16 0 chr13 55739616 55739683 -46133486 + L1MA4 LINE L1 6179 6258 -42 2028 127 16 0 chr13 55742293 55742472 -46130697 - AluSx SINE Alu 0 312 124 198 0 0 0 chr13 55742472 55742494 -46130675 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2028 127 16 0 chr13 55742494 55742621 -46130548 - AluSx SINE Alu -188 124 1 21 0 0 0 chr13 55743573 55743594 -46129575 + AT_rich Low_complexity Low_complexity 1 21 0 27 92 0 0 chr13 55743687 55743763 -46129406 + AT_rich Low_complexity Low_complexity 1 76 0 774 321 102 33 chr13 55743805 55744508 -46128661 + L1ME3 LINE L1 3966 4717 -1429 323 326 22 0 chr13 55744514 55744652 -46128517 + GA-rich Low_complexity Low_complexity 1 141 0 273 29 0 0 chr13 55744799 55744833 -46128336 + (TA)n Simple_repeat Simple_repeat 1 34 0 318 290 124 45 chr13 55745165 55745479 -46127690 + L1ME3 LINE L1 5625 5963 -199 232 265 73 0 chr13 55746873 55746941 -46126228 + MIR SINE MIR 186 258 -4 22 56 0 0 chr13 55747950 55747986 -46125183 + AT_rich Low_complexity Low_complexity 1 36 0 445 204 10 10 chr13 55748001 55748104 -46125065 + MER53 DNA DNA 23 125 -64 333 261 102 45 chr13 55748157 55748314 -46124855 + L2 LINE L2 3146 3311 -2 332 310 35 17 chr13 55750845 55750961 -46122208 - MER5A DNA MER1_type -1 188 71 867 230 96 14 chr13 55750974 55751265 -46121904 - L1MD3 LINE L1 -5 7990 7676 234 356 30 0 chr13 55751709 55751810 -46121359 + MIR SINE MIR 45 148 -60 450 145 26 0 chr13 55751813 55751889 -46121280 + 7SLRNA srpRNA srpRNA 232 309 -11 251 355 36 28 chr13 55751907 55752101 -46121068 - MIR3 SINE MIR -12 196 1 1526 216 121 116 chr13 55752748 55753483 -46119686 + LTR41 LTR ERVL 27 765 -8 924 229 35 10 chr13 55754388 55754589 -46118580 + MLT1A2 LTR MaLR 169 374 0 204 40 0 0 chr13 55754771 55754796 -46118373 + (TG)n Simple_repeat Simple_repeat 1 25 0 790 253 84 45 chr13 55755679 55756248 -46116921 + L2 LINE L2 2739 3313 0 287 361 33 0 chr13 55756581 55756703 -46116466 - L2 LINE L2 0 3313 3188 6711 131 20 1 chr13 55757145 55758598 -46114571 + L1MA3 LINE L1 4823 6303 -2 24 53 0 0 chr13 55758835 55758873 -46114296 + AT_rich Low_complexity Low_complexity 1 38 0 2355 89 0 0 chr13 55758893 55759197 -46113972 - AluY SINE Alu -7 304 1 318 67 0 0 chr13 55760502 55760547 -46112622 + (TC)n Simple_repeat Simple_repeat 2 46 0 674 276 116 37 chr13 55761606 55761959 -46111210 - MLT1J2 LTR MaLR -17 433 72 2002 104 49 0 chr13 55762504 55762791 -46110378 - AluSp SINE Alu -12 301 1 339 276 52 0 chr13 55763079 55763195 -46109974 - MLT1L LTR MaLR -2 613 492 267 285 76 76 chr13 55763262 55763434 -46109735 - MLT1L LTR MaLR -248 367 196 2514 23 40 0 chr13 55764586 55764885 -46108284 + AluY SINE Alu 1 311 0 207 0 0 0 chr13 55765150 55765173 -46107996 + (A)n Simple_repeat Simple_repeat 1 23 0 311 294 135 25 chr13 55766285 55766448 -46106721 - MIR SINE MIR -28 234 54 448 260 89 16 chr13 55767460 55767706 -46105463 + L1ME3A LINE L1 613 876 -5194 589 179 0 14 chr13 55767885 55768030 -46105139 + CT-rich Low_complexity Low_complexity 2 144 0 2285 269 82 33 chr13 55768556 55770599 -46102570 + L1ME3A LINE L1 3953 6099 -5 499 133 0 0 chr13 55771040 55771123 -46102046 + L1PA11 LINE L1 6090 6172 -2 37 52 0 0 chr13 55771195 55771253 -46101916 + AT_rich Low_complexity Low_complexity 1 58 0 1944 112 10 23 chr13 55771981 55772285 -46100884 - MER1A DNA MER1_type 0 529 230 527 224 8 67 chr13 55772523 55772657 -46100512 + FLAM_A SINE Alu 1 126 -7 2127 82 7 0 chr13 55772688 55773031 -46100138 - AluY SINE Alu 0 345 1 32 26 0 0 chr13 55773568 55773607 -46099562 + AT_rich Low_complexity Low_complexity 1 39 0 439 364 24 24 chr13 55773694 55773900 -46099269 - MIR SINE MIR -37 225 20 21 0 0 0 chr13 55774723 55774744 -46098425 + AT_rich Low_complexity Low_complexity 1 21 0 1318 227 59 12 chr13 55774752 55775157 -46098012 + L1MC4 LINE L1 7238 7661 -381 882 245 98 61 chr13 55775159 55775600 -46097569 - MLT1D LTR MaLR 0 505 49 2315 95 0 0 chr13 55775832 55776137 -46097032 - AluSq SINE Alu -8 305 1 330 138 0 0 chr13 55777772 55777830 -46095339 + (CA)n Simple_repeat Simple_repeat 2 59 0 183 205 0 0 chr13 55778723 55778762 -46094407 + (TTG)n Simple_repeat Simple_repeat 2 40 0 449 272 184 0 chr13 55778951 55779098 -46094071 + MER5A DNA MER1_type 15 188 -1 2511 237 38 29 chr13 55780227 55780962 -46092207 - L1MC4 LINE L1 0 8042 7301 1505 199 7 0 chr13 55782246 55782518 -46090651 - AluSx SINE Alu -38 274 1 1370 233 71 54 chr13 55782595 55783059 -46090110 - MLT1D LTR MaLR -4 501 30 249 237 0 82 chr13 55783723 55783820 -46089349 + L1MC4 LINE L1 6614 6702 -1340 258 266 51 0 chr13 55783864 55783943 -46089226 + L1MC4 LINE L1 6620 6702 -1340 241 206 82 0 chr13 55783927 55784000 -46089169 - L1MC4 LINE L1 -1340 6702 6624 * 198 71 0 0 chr13 55784000 55784028 -46089141 + (CA)n Simple_repeat Simple_repeat 2 29 0 1924 139 13 0 chr13 55784402 55784704 -46088465 + AluSx SINE Alu 1 306 -6 2109 91 0 7 chr13 55784706 55785065 -46088104 + AluSx SINE Alu 1 357 0 320 208 117 0 chr13 55785114 55785191 -46087978 + MIR SINE MIR 124 209 -53 270 0 0 0 chr13 55785930 55785960 -46087209 + (TG)n Simple_repeat Simple_repeat 2 31 0 7651 23 0 1 chr13 55787634 55788761 -46084408 + L1PA3 LINE L1 5031 6152 -3 372 323 35 40 chr13 55789136 55789337 -46083832 - L2 LINE L2 -5 3308 3109 3644 262 97 67 chr13 55789767 55792484 -46080685 + L1ME1 LINE L1 2111 4744 -1402 2077 226 102 63 chr13 55792484 55793279 -46079890 - LTR1B LTR ERV1 0 826 1 3644 262 97 67 chr13 55793279 55793534 -46079635 + L1ME1 LINE L1 4744 4990 -1156 2083 155 0 0 chr13 55793534 55793843 -46079326 + AluSx SINE Alu 2 310 -2 3644 262 97 67 chr13 55793843 55793940 -46079229 + L1ME1 LINE L1 4990 5274 -872 719 223 173 97 chr13 55794005 55794467 -46078702 + L1ME1 LINE L1 5439 5935 -229 921 143 0 0 chr13 55794475 55794608 -46078561 + AluSx SINE Alu 5 137 -175 6596 150 18 23 chr13 55794615 55795789 -46077380 + L1P LINE L1 11 1178 -4968 7853 68 2 3 chr13 55795796 55797596 -46075573 + L1PA6 LINE L1 4335 6141 -13 186 43 0 0 chr13 55797601 55797624 -46075545 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr13 55797627 55797649 -46075520 + AT_rich Low_complexity Low_complexity 1 22 0 963 166 0 0 chr13 55797649 55797831 -46075338 + AluSx SINE Alu 136 317 0 442 278 64 60 chr13 55797831 55798065 -46075104 + L1ME1 LINE L1 5928 6162 -4 293 54 0 0 chr13 55798132 55798169 -46075000 - MADE1 DNA Mariner -36 44 8 1887 167 23 0 chr13 55799904 55800209 -46072960 + AluSx SINE Alu 1 312 0 993 182 96 93 chr13 55800340 55800360 -46072809 + LTR52 LTR ERVL 1 19 -402 2428 60 0 0 chr13 55800360 55800662 -46072507 - AluY SINE Alu -9 302 1 993 182 96 93 chr13 55800662 55801059 -46072110 + LTR52 LTR ERVL 19 419 -2 513 208 46 8 chr13 55801060 55801190 -46071979 + LTR52-int LTR ERVL 3 137 -3419 1747 233 16 88 chr13 55801190 55801670 -46071499 + HERVL74 LTR ERVL 1600 2042 -3643 2800 196 138 28 chr13 55801670 55802414 -46070755 - LTR1B LTR ERV1 0 826 1 1747 233 16 88 chr13 55802414 55802443 -46070726 + HERVL74 LTR ERVL 2042 2072 -3613 372 247 0 0 chr13 55802594 55802675 -46070494 + LTR52 LTR ERVL 306 386 -35 357 189 11 22 chr13 55803824 55803914 -46069255 - L1MA10 LINE L1 -2 6332 6244 497 266 38 64 chr13 55803990 55804257 -46068912 + MLT1G1 LTR MaLR 61 320 -275 220 191 0 0 chr13 55804257 55804299 -46068870 + GA-rich Low_complexity Low_complexity 2 43 0 443 236 211 37 chr13 55805804 55806051 -46067118 + MLT1G LTR MaLR 20 310 -239 1192 241 47 66 chr13 55807252 55807617 -46065552 - MLT1A1 LTR MaLR -7 358 1 27 81 0 0 chr13 55807813 55807875 -46065294 + AT_rich Low_complexity Low_complexity 1 62 0 420 364 110 11 chr13 55809371 55809635 -46063534 - L3 LINE CR1 -138 1439 1150 182 271 68 17 chr13 55813038 55813097 -46060072 - L2 LINE L2 0 3313 3252 25 31 0 0 chr13 55813188 55813220 -46059949 + AT_rich Low_complexity Low_complexity 1 32 0 327 293 179 14 chr13 55813812 55813952 -46059217 + MER5A DNA MER1_type 27 189 0 1069 280 74 48 chr13 55815163 55815689 -46057480 - MLT1G1 LTR MaLR 0 595 19 2231 138 8 6 chr13 55815788 55816151 -46057018 + THE1B LTR MaLR 1 364 0 210 122 49 0 chr13 55816473 55816514 -46056655 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 402 199 106 3 chr13 55816582 55816687 -46056482 + MLT1H LTR MaLR 428 510 -39 2082 110 7 0 chr13 55817713 55817995 -46055174 - AluSc SINE Alu -12 297 14 272 270 0 0 chr13 55819027 55819101 -46054068 - MLT1I LTR MaLR -26 383 310 321 286 24 24 chr13 55819223 55819349 -46053820 - MLT1H LTR MaLR -377 172 47 2223 128 105 8 chr13 55820731 55821121 -46052048 - MSTA LTR MaLR 0 428 1 310 208 195 39 chr13 55822540 55822694 -46050475 - L2 LINE L2 -91 3222 3045 1363 231 14 14 chr13 55822706 55822996 -46050173 + Tigger7 DNA MER2_type 9 298 -435 * 1426 176 80 33 chr13 55822994 55823330 -46049839 + Tigger7 DNA MER2_type 2122 2473 -14 3117 277 84 59 chr13 55823342 55824535 -46048634 - L2 LINE L2 -273 3040 1794 2122 72 10 10 chr13 55824535 55824827 -46048342 - AluSq SINE Alu -21 292 1 3117 277 84 59 chr13 55824827 55825081 -46048088 - L2 LINE L2 -1519 1794 1548 270 167 56 42 chr13 55825341 55825413 -46047756 + LTR66 LTR ERVL 385 457 -153 225 0 0 0 chr13 55825446 55825473 -46047696 + (TG)n Simple_repeat Simple_repeat 1 52 0 225 0 0 0 chr13 55825473 55825498 -46047671 + (TG)n Simple_repeat Simple_repeat 2 26 0 231 114 0 0 chr13 55826816 55826851 -46046318 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 21 95 0 0 chr13 55827498 55827561 -46045608 + AT_rich Low_complexity Low_complexity 1 63 0 560 277 33 74 chr13 55828208 55828479 -46044690 + MIR SINE MIR 1 260 -2 31 0 0 0 chr13 55829069 55829100 -46044069 + AT_rich Low_complexity Low_complexity 1 31 0 998 149 129 20 chr13 55830514 55830715 -46042454 - MSTA LTR MaLR 0 428 206 226 340 62 0 chr13 55831754 55831851 -46041318 + MER91A DNA MER1_type 18 120 -76 229 378 161 27 chr13 55833811 55834364 -46038805 + L2 LINE L2 192 818 -2496 486 338 107 53 chr13 55834805 55834933 -46038236 + L2 LINE L2 1789 1909 -1405 1711 176 4 0 chr13 55834933 55835240 -46037929 - AluSg SINE Alu 0 309 2 486 338 107 53 chr13 55835240 55835738 -46037431 + L2 LINE L2 1909 2475 -839 2115 99 0 0 chr13 55835738 55836011 -46037158 + AluSg SINE Alu 23 295 -15 486 338 107 53 chr13 55836011 55836223 -46036946 + L2 LINE L2 2475 2674 -640 204 97 0 0 chr13 55836390 55836421 -46036748 + (TAAAG)n Simple_repeat Simple_repeat 5 35 0 477 293 53 7 chr13 55837165 55837315 -46035854 + MLT1J LTR MaLR 37 193 -318 2119 213 126 24 chr13 55837395 55838053 -46035116 - MER50 LTR ERV1 0 734 10 252 77 0 0 chr13 55838145 55838184 -46034985 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1933 91 0 16 chr13 55838187 55838440 -46034729 - AluY SINE Alu -24 287 39 432 351 81 14 chr13 55839857 55840079 -46033090 + MLT1J LTR MaLR 115 351 -160 345 47 0 0 chr13 55840186 55840229 -46032940 + (TG)n Simple_repeat Simple_repeat 2 44 0 2309 140 80 8 chr13 55841121 55841520 -46031649 - MSTA LTR MaLR 0 428 1 233 271 21 0 chr13 55842611 55842659 -46030510 + LTR16A LTR ERVL 118 166 -284 994 290 14 32 chr13 55842692 55842979 -46030190 + LTR16A LTR ERVL 169 491 0 486 255 229 40 chr13 55843176 55843548 -46029621 - MLT1H LTR MaLR 0 549 108 201 121 0 0 chr13 55843586 55843619 -46029550 + (TC)n Simple_repeat Simple_repeat 1 33 0 291 260 0 0 chr13 55843693 55843766 -46029403 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 297 316 13 76 chr13 55843802 55843857 -46029312 - MIR SINE MIR -95 167 110 5475 134 73 62 chr13 55843857 55845106 -46028063 - MER11A LTR ERVK 0 1266 4 297 316 13 76 chr13 55845106 55845208 -46027961 - MIR SINE MIR -152 110 20 215 356 67 11 chr13 55845283 55845373 -46027796 - MIR3 SINE MIR -20 188 94 241 226 10 69 chr13 55846160 55846262 -46026907 + CT-rich Low_complexity Low_complexity 2 97 0 432 351 84 24 chr13 55847393 55847772 -46025397 + LTR67 LTR ERVL 123 524 -33 200 409 63 13 chr13 55847864 55848023 -46025146 + L2 LINE L2 1033 1199 -2115 200 139 28 0 chr13 55848111 55848147 -46025022 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 284 239 0 45 chr13 55898720 55898808 -45974361 + FAM SINE Alu 67 150 -25 1604 251 141 16 chr13 55898813 55899423 -45973746 + L1ME1 LINE L1 5463 6148 -18 23 33 0 0 chr13 55900291 55900321 -45972848 + AT_rich Low_complexity Low_complexity 1 30 0 189 364 111 0 chr13 55900884 55900983 -45972186 - MIR3 SINE MIR -18 190 81 819 254 69 22 chr13 55901066 55901298 -45971871 + MIR SINE MIR 10 252 -10 28 0 0 0 chr13 55901584 55901612 -45971557 + AT_rich Low_complexity Low_complexity 1 28 0 27 73 0 0 chr13 55903275 55903330 -45969839 + AT_rich Low_complexity Low_complexity 1 55 0 246 259 37 56 chr13 55903837 55903945 -45969224 - MIR SINE MIR -1 261 156 1447 123 0 9 chr13 55903945 55904192 -45968977 - AluSq SINE Alu 0 309 65 249 143 0 0 chr13 55904193 55904235 -45968934 + Alu SINE Alu 36 77 -226 244 260 0 0 chr13 55904236 55904286 -45968883 - MIR SINE MIR -101 161 112 23 68 0 0 chr13 55904826 55904870 -45968299 + AT_rich Low_complexity Low_complexity 1 44 0 400 244 62 80 chr13 55905059 55905279 -45967890 + MIR SINE MIR 31 243 -19 1096 251 113 53 chr13 55905512 55905550 -45967619 - MLT2B1 LTR ERVL 0 520 486 378 0 0 0 chr13 55905550 55905592 -45967577 + (TG)n Simple_repeat Simple_repeat 1 42 0 1096 251 113 53 chr13 55905592 55906042 -45967127 - MLT2B1 LTR ERVL -34 486 3 202 137 0 39 chr13 55906336 55906387 -45966782 + (TTCCC)n Simple_repeat Simple_repeat 4 52 0 2335 100 0 0 chr13 55906536 55906845 -45966324 - AluSc SINE Alu 0 309 1 574 349 145 18 chr13 55906952 55907448 -45965721 + L2 LINE L2 2240 2798 -516 327 275 36 22 chr13 55907845 55907983 -45965186 - L1MEc LINE L1 -4305 2091 1952 1857 119 55 81 chr13 55908591 55908976 -45964193 + THE1C LTR MaLR 1 375 0 31 44 0 0 chr13 55909904 55909949 -45963220 + AT_rich Low_complexity Low_complexity 1 45 0 433 295 23 16 chr13 55911089 55911218 -45961951 + MER5A DNA MER1_type 56 185 -4 495 339 110 0 chr13 55911710 55911928 -45961241 + LTR16A LTR ERVL 201 442 -8 199 172 17 17 chr13 55913243 55913301 -45959868 + CT-rich Low_complexity Low_complexity 4 61 0 27 0 0 0 chr13 55913495 55913522 -45959647 + AT_rich Low_complexity Low_complexity 1 27 0 13626 224 27 18 chr13 55913525 55914960 -45958209 - L1MA4A LINE L1 -12 6291 4871 1940 119 55 0 chr13 55914960 55915253 -45957916 + AluSg1 SINE Alu 1 309 0 13626 224 27 18 chr13 55915253 55918406 -45954763 - L1MA4A LINE L1 -1432 4871 1711 934 219 68 39 chr13 55918417 55918456 -45954713 - L1PB4 LINE L1 -3 6153 6117 180 111 0 0 chr13 55918456 55918483 -45954686 + (TA)n Simple_repeat Simple_repeat 2 28 0 934 219 68 39 chr13 55918483 55918603 -45954566 - L1PB4 LINE L1 -39 6117 5968 9480 205 31 38 chr13 55918603 55920223 -45952946 - L1PB4 LINE L1 -176 5987 4357 366 23 0 0 chr13 55920223 55920266 -45952903 + (TG)n Simple_repeat Simple_repeat 2 44 0 9480 205 31 38 chr13 55920266 55921007 -45952162 - L1PB4 LINE L1 -1806 4357 3612 2348 140 3 3 chr13 55921007 55921371 -45951798 + THE1B LTR MaLR 1 364 0 9480 205 31 38 chr13 55921371 55921874 -45951295 - L1PB4 LINE L1 -2551 3612 3122 465 163 0 0 chr13 55921874 55921954 -45951215 - AluSc SINE Alu -4 305 226 9480 205 31 38 chr13 55921954 55922372 -45950797 - L1PB4 LINE L1 -3041 3122 2703 3645 222 45 20 chr13 55922497 55924006 -45949163 - L1MA9 LINE L1 -176 6136 4576 965 208 51 144 chr13 55924006 55924415 -45948754 + MLT1A2 LTR MaLR 4 374 0 3645 222 45 20 chr13 55924415 55924662 -45948507 - L1MA9 LINE L1 -1736 4576 4337 240 243 40 99 chr13 55924663 55924862 -45948307 - L1M4c LINE L1 -4046 2166 1985 4918 105 0 1 chr13 55924862 55925588 -45947581 + L1PA8 LINE L1 5464 6188 0 240 243 40 99 chr13 55925588 55925659 -45947510 - L1M4c LINE L1 -4227 1985 1911 23 0 0 0 chr13 55925688 55925711 -45947458 + AT_rich Low_complexity Low_complexity 1 23 0 1374 255 96 24 chr13 55925833 55926644 -45946525 - L1M4c LINE L1 -4731 1410 519 634 342 60 21 chr13 55926936 55927366 -45945803 - L1M4c LINE L1 -5694 447 1 29 28 0 0 chr13 55927743 55927779 -45945390 + AT_rich Low_complexity Low_complexity 1 36 0 2119 104 13 0 chr13 55928049 55928348 -45944821 - AluSp SINE Alu -10 303 1 430 250 50 8 chr13 55928519 55928639 -45944530 - MLT1J1 LTR MaLR -230 216 92 802 275 63 96 chr13 55929898 55930189 -45942980 + L1MEd LINE L1 403 702 -5608 1520 128 12 0 chr13 55930189 55930432 -45942737 - L1MA4A LINE L1 -12 6291 6046 802 275 63 96 chr13 55930432 55931320 -45941849 + L1MEd LINE L1 702 1581 -4729 22 0 0 0 chr13 55931774 55931796 -45941373 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr13 55931955 55931990 -45941179 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1485 190 0 14 chr13 55931993 55932277 -45940892 - AluJb SINE Alu -32 280 1 584 257 53 29 chr13 55932277 55932483 -45940686 + L1MC4 LINE L1 6829 7039 -1003 604 275 55 42 chr13 55932870 55933297 -45939872 + L1MDb LINE L1 75 457 -6083 3341 212 44 21 chr13 55933634 55933812 -45939357 + L1MD2 LINE L1 5519 5691 -2304 2243 70 7 10 chr13 55933812 55934113 -45939056 - AluY SINE Alu -11 300 1 3341 212 44 21 chr13 55934113 55934754 -45938415 + L1MD2 LINE L1 5691 7993 -2 1692 186 3 0 chr13 55935477 55935773 -45937396 + AluJb SINE Alu 1 297 -15 2186 105 3 0 chr13 55936238 55936532 -45936637 - AluSg1 SINE Alu -14 295 1 1071 186 45 23 chr13 55936857 55937121 -45936048 - L1MDa LINE L1 -4123 2417 2148 496 274 137 0 chr13 55937566 55937712 -45935457 - MER5B DNA MER1_type 0 178 13 21 89 0 0 chr13 55941968 55942024 -45931145 + AT_rich Low_complexity Low_complexity 1 56 0 1740 79 21 4 chr13 55942030 55942270 -45930899 - L1MA3 LINE L1 -364 5941 5698 1698 131 49 80 chr13 55942375 55942725 -45930444 - MER44D DNA MER2_type 0 609 1 250 188 50 0 chr13 55942821 55942901 -45930268 + (TA)n Simple_repeat Simple_repeat 1 84 0 825 127 0 8 chr13 55943089 55943215 -45929954 + FLAM_C SINE Alu 3 127 -16 21 0 0 0 chr13 55943872 55943893 -45929276 + AT_rich Low_complexity Low_complexity 1 21 0 217 366 17 64 chr13 55944519 55944691 -45928478 + L2 LINE L2 2774 2937 -377 401 307 135 0 chr13 55946188 55946411 -45926758 - MIR SINE MIR -6 256 3 21 36 0 0 chr13 55947164 55947192 -45925977 + AT_rich Low_complexity Low_complexity 1 28 0 1940 92 4 8 chr13 55947327 55947588 -45925581 + AluSc SINE Alu 1 260 -49 22 0 0 0 chr13 55948317 55948339 -45924830 + AT_rich Low_complexity Low_complexity 1 22 0 2688 302 79 25 chr13 55949092 55950622 -45922547 - L1MEc LINE L1 -4748 1648 37 348 287 10 72 chr13 55950672 55950867 -45922302 + HAL1 LINE L1 101 283 -2224 198 0 0 0 chr13 55950930 55950952 -45922217 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 2050 97 3 7 chr13 55951405 55951695 -45921474 - AluSx SINE Alu -23 289 1 2984 227 47 4 chr13 55951850 55952590 -45920579 - L1 LINE L1 -3139 3007 2236 8953 196 60 12 chr13 55952617 55954788 -45918381 + L1 LINE L1 3036 5311 -835 43821 40 1 1 chr13 55954793 55960783 -45912386 + L1PA3 LINE L1 14 5999 -156 1935 57 4 4 chr13 55960907 55961155 -45912014 + L1PA8 LINE L1 5910 6157 -15 21 0 0 0 chr13 55961170 55961191 -45911978 + AT_rich Low_complexity Low_complexity 1 21 0 1485 47 5 0 chr13 55961333 55961523 -45911646 + L1PA4 LINE L1 5940 6130 -25 4080 147 85 4 chr13 55961585 55961635 -45911534 + Tigger1 DNA MER2_type 1 46 -2372 222 116 0 0 chr13 55961635 55961678 -45911491 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 4080 147 85 4 chr13 55961678 55962353 -45910816 + Tigger1 DNA MER2_type 46 785 -1633 261 299 0 0 chr13 55962849 55962916 -45910253 + L2 LINE L2 3242 3308 -5 1619 236 57 52 chr13 55962918 55963571 -45909598 + L1MC4 LINE L1 7369 8024 -18 1670 176 7 0 chr13 55963571 55963893 -45909276 - AluJb SINE Alu 0 324 1 1491 291 38 26 chr13 55965794 55966368 -45906801 + MLT1E LTR MaLR 1 581 -12 186 103 0 0 chr13 55966712 55966741 -45906428 + (CA)n Simple_repeat Simple_repeat 1 29 0 251 194 111 42 chr13 55966788 55966860 -45906309 + L1MC4 LINE L1 6616 6692 -1350 425 18 36 0 chr13 55967844 55967900 -45905269 + L1PA3 LINE L1 6098 6155 0 5207 154 15 21 chr13 55967930 55968909 -45904260 + L1MA8 LINE L1 5317 6289 -2 369 285 102 75 chr13 55969047 55969676 -45903493 + HAL1 LINE L1 657 1302 -1205 2291 214 39 12 chr13 55969819 55970337 -45902832 - MER82 DNA MER2_type 0 653 122 282 231 27 0 chr13 55970447 55970531 -45902638 + L1ME1 LINE L1 6072 6160 -6 782 306 49 36 chr13 55970561 55970947 -45902222 + HAL1 LINE L1 1755 2145 -362 1106 179 191 19 chr13 55971153 55971410 -45901759 - AluJb SINE Alu 0 302 2 31 58 0 0 chr13 55971535 55971587 -45901582 + AT_rich Low_complexity Low_complexity 1 52 0 1623 159 78 29 chr13 55972058 55972403 -45900766 + THE1B LTR MaLR 3 364 0 529 284 0 8 chr13 55973635 55973769 -45899400 - MER94 DNA DNA 0 134 2 404 283 155 45 chr13 55975388 55975678 -45897491 + MLT1L LTR MaLR 167 488 -127 334 267 145 15 chr13 55976089 55976220 -45896949 + MIR SINE MIR 4 151 -111 227 327 10 40 chr13 55976292 55976393 -45896776 - MIR SINE MIR -114 148 51 402 257 10 0 chr13 55978334 55978435 -45894734 - MIR SINE MIR -39 223 122 2220 87 0 3 chr13 55979456 55979755 -45893414 + AluSx SINE Alu 1 298 -14 792 297 98 35 chr13 55979970 55980347 -45892822 + MLT1J2 LTR MaLR 37 437 -13 261 293 47 28 chr13 55981959 55982065 -45891104 - MIR SINE MIR -121 141 34 22 0 0 0 chr13 55982812 55982834 -45890335 + AT_rich Low_complexity Low_complexity 1 22 0 222 210 17 76 chr13 55982868 55982957 -45890212 + (TA)n Simple_repeat Simple_repeat 2 84 -29 2895 163 70 22 chr13 55982957 55983539 -45889630 + MER4B LTR ERV1 1 610 0 222 210 17 76 chr13 55983539 55983568 -45889601 + (TA)n Simple_repeat Simple_repeat 84 113 0 423 358 7 7 chr13 55984176 55984327 -45888842 + MLT1I LTR MaLR 71 221 -188 493 266 69 69 chr13 55984419 55984592 -45888577 + MER58A DNA MER1_type 9 181 -43 21 0 0 0 chr13 55985109 55985130 -45888039 + AT_rich Low_complexity Low_complexity 1 21 0 1141 112 0 24 chr13 55985303 55985472 -45887697 + AluSg/x SINE Alu 115 279 -33 315 0 0 0 chr13 55985476 55985511 -45887658 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 296 247 13 13 chr13 55985948 55986025 -45887144 + (CA)n Simple_repeat Simple_repeat 2 78 0 293 234 32 117 chr13 55986044 55986198 -45886971 + MER5B DNA MER1_type 1 141 -37 1256 213 84 55 chr13 55986699 55987001 -45886168 + MSTD LTR MaLR 5 322 -74 2012 131 0 0 chr13 55987001 55987292 -45885877 - AluSx SINE Alu -21 291 1 1256 213 84 55 chr13 55987292 55987369 -45885800 + MSTD LTR MaLR 322 395 -1 5937 228 58 58 chr13 55987371 55988723 -45884446 + MSTD-int LTR MaLR 1 1356 -379 1517 215 145 44 chr13 55988723 55989226 -45883943 + MLT2B3 LTR ERVL 1 554 0 5937 228 58 58 chr13 55989226 55989607 -45883562 + MSTD-int LTR MaLR 1356 1735 0 1004 221 148 39 chr13 55989607 55989964 -45883205 + MSTD LTR MaLR 1 396 0 24 0 0 0 chr13 55991239 55991263 -45881906 + AT_rich Low_complexity Low_complexity 1 24 0 265 365 69 16 chr13 55992549 55992738 -45880431 + L2 LINE L2 2616 2814 -500 183 324 108 0 chr13 55993379 55993453 -45879716 - L2 LINE L2 0 3313 3232 385 396 58 56 chr13 55994934 55995346 -45877823 - L2 LINE L2 -1 3271 2859 29 0 0 0 chr13 55995666 55995695 -45877474 + AT_rich Low_complexity Low_complexity 1 29 0 256 313 168 68 chr13 55995695 55996046 -45877123 - L2 LINE L2 -804 2510 2195 2186 110 3 3 chr13 55996046 55996347 -45876822 + AluSq SINE Alu 3 303 -10 256 313 168 68 chr13 55996347 55996815 -45876354 - L2 LINE L2 -1118 2196 1609 733 269 36 36 chr13 55998204 55998453 -45874716 - MIR SINE MIR -11 251 3 21 89 0 0 chr13 55999639 55999695 -45873474 + AT_rich Low_complexity Low_complexity 1 56 0 23 68 0 0 chr13 55999928 55999972 -45873197 + AT_rich Low_complexity Low_complexity 1 44 0 735 320 20 12 chr13 56001631 56001881 -45871288 - MIR SINE MIR -2 260 9 231 23 93 0 chr13 56002036 56002079 -45871090 + T-rich Low_complexity Low_complexity 2 48 0 356 281 50 14 chr13 56002108 56002247 -45870922 - MLT1L LTR MaLR -32 583 440 893 173 0 13 chr13 56002253 56002409 -45870760 - FRAM SINE Alu -11 165 12 245 317 119 53 chr13 56002471 56002790 -45870379 - MLT1L LTR MaLR -235 380 41 693 294 17 35 chr13 56002828 56003059 -45870110 + MIR SINE MIR 6 232 -30 1824 180 16 0 chr13 56003119 56003441 -45869728 + L1MCa LINE L1 26 352 -6074 181 286 78 84 chr13 56003713 56003867 -45869302 - L2 LINE L2 -47 3266 3114 318 284 14 19 chr13 56004867 56005082 -45868087 + L1M4 LINE L1 3120 3333 -2813 1448 178 48 69 chr13 56005126 56005353 -45867816 - MLT1B LTR MaLR 0 390 173 1949 161 0 3 chr13 56005353 56005701 -45867468 - L1MA5 LINE L1 0 6300 5954 1448 178 48 69 chr13 56005701 56005866 -45867303 - MLT1B LTR MaLR -217 173 6 356 304 0 0 chr13 56005875 56005967 -45867202 - MER5A DNA MER1_type -89 100 9 464 287 95 52 chr13 56005991 56006600 -45866569 + L1M4 LINE L1 3343 3977 -2169 394 232 20 10 chr13 56006604 56006703 -45866466 - MER5A DNA MER1_type -86 103 4 918 163 6 39 chr13 56007339 56007517 -45865652 + MER20 DNA MER1_type 1 172 -47 30 69 0 0 chr13 56010404 56010462 -45862707 + AT_rich Low_complexity Low_complexity 1 58 0 328 238 59 10 chr13 56011045 56011146 -45862023 + L1M4 LINE L1 2829 2934 -3212 1681 258 58 12 chr13 56011147 56011748 -45861421 + L1M4 LINE L1 3726 4354 -1792 30 0 0 0 chr13 56011776 56011806 -45861363 + AT_rich Low_complexity Low_complexity 1 30 0 273 217 17 0 chr13 56011812 56011872 -45861297 + L1M4 LINE L1 4497 4557 -1589 * 1152 259 73 11 chr13 56011870 56012307 -45860862 + L1M4 LINE L1 4823 5286 -860 4352 226 71 68 chr13 56012328 56013984 -45859185 + L1M4 LINE L1 14 1674 -4868 265 170 11 11 chr13 56014643 56014737 -45858432 + (TA)n Simple_repeat Simple_repeat 1 94 0 26 30 0 0 chr13 56014771 56014804 -45858365 + AT_rich Low_complexity Low_complexity 1 33 0 264 57 0 0 chr13 56014805 56014840 -45858329 + MLT2A1 LTR ERVL 394 428 -16 342 0 0 0 chr13 56014842 56014880 -45858289 + (TA)n Simple_repeat Simple_repeat 1 38 0 2879 87 10 20 chr13 56014887 56015291 -45857878 - MLT2A1 LTR ERVL -44 400 1 1645 199 3 10 chr13 56015829 56016141 -45857028 - AluJb SINE Alu -2 310 1 2316 109 11 9 chr13 56016164 56016511 -45856658 - THE1A LTR MaLR -7 348 1 326 115 19 0 chr13 56016511 56016563 -45856606 - THE1A-int LTR MaLR 0 1580 1528 11492 98 7 4 chr13 56016586 56018147 -45855022 - THE1A-int LTR MaLR -14 1566 1 2371 113 8 8 chr13 56018147 56018502 -45854667 - THE1A LTR MaLR 0 355 1 186 143 0 0 chr13 56018542 56018577 -45854592 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr13 56019012 56019036 -45854133 + AT_rich Low_complexity Low_complexity 1 24 0 202 344 116 62 chr13 56019248 56019472 -45853697 + L2 LINE L2 2849 3084 -188 2971 200 26 14 chr13 56020091 56020742 -45852427 + L1MC3 LINE L1 7097 7755 -30 258 332 56 16 chr13 56021376 56021626 -45851543 - MARNA DNA Mariner -14 572 313 26 30 0 0 chr13 56021654 56021687 -45851482 + AT_rich Low_complexity Low_complexity 1 33 0 634 301 168 31 chr13 56022550 56023185 -45849984 + L1ME3A LINE L1 1118 1992 -4571 31 88 0 0 chr13 56023332 56023412 -45849757 + AT_rich Low_complexity Low_complexity 1 80 0 321 312 75 11 chr13 56023415 56023601 -45849568 + L1ME3A LINE L1 2363 2560 -4003 1326 265 78 34 chr13 56024071 56024119 -45849050 + L1ME3A LINE L1 5374 5418 -988 2066 134 3 13 chr13 56024119 56024432 -45848737 + AluSp SINE Alu 1 310 -3 1326 265 78 34 chr13 56024432 56024846 -45848323 + L1ME3A LINE L1 5418 5812 -594 1166 182 42 78 chr13 56024846 56025230 -45847939 + MLT1A2 LTR MaLR 5 374 0 1326 265 78 34 chr13 56025230 56025606 -45847563 + L1ME3A LINE L1 5812 6253 -153 2075 164 97 5 chr13 56025879 56026269 -45846900 + MSTA LTR MaLR 1 426 -2 203 0 37 0 chr13 56028976 56029003 -45844166 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr13 56032374 56032395 -45840774 + AT_rich Low_complexity Low_complexity 1 21 0 618 329 13 51 chr13 56032669 56032906 -45840263 - MIR SINE MIR -9 253 26 405 0 0 0 chr13 56032912 56032957 -45840212 + (CA)n Simple_repeat Simple_repeat 2 46 0 205 294 118 24 chr13 56033077 56033162 -45840007 - MIR SINE MIR -97 111 19 245 164 18 36 chr13 56033636 56033691 -45839478 + MIR SINE MIR 91 144 -118 1851 164 0 10 chr13 56036600 56036904 -45836265 + AluJb SINE Alu 1 301 -11 23 68 0 0 chr13 56037062 56037106 -45836063 + AT_rich Low_complexity Low_complexity 1 44 0 45 61 0 10 chr13 56037276 56037307 -45835862 + AT_rich Low_complexity Low_complexity 1 31 -66 2037 29 4 0 chr13 56037307 56037548 -45835621 + L1PA3 LINE L1 5911 6152 -3 45 61 0 10 chr13 56037548 56037614 -45835555 + AT_rich Low_complexity Low_complexity 31 97 0 22 35 0 0 chr13 56038271 56038300 -45834869 + AT_rich Low_complexity Low_complexity 1 29 0 365 188 47 12 chr13 56038328 56038413 -45834756 - MIR SINE MIR -28 234 147 213 302 37 75 chr13 56039096 56039241 -45833928 + MIR SINE MIR 3 140 -68 330 321 137 5 chr13 56039558 56039767 -45833402 + MIR3 SINE MIR 18 256 -6 1936 122 0 61 chr13 56040337 56040664 -45832505 - AluSg SINE Alu -1 309 3 205 293 115 73 chr13 56041298 56041489 -45831680 - L2 LINE L2 -880 2434 2236 2086 116 23 0 chr13 56041518 56041819 -45831350 + AluSg SINE Alu 1 308 -2 27 0 0 0 chr13 56045906 56045933 -45827236 + AT_rich Low_complexity Low_complexity 1 27 0 225 0 0 0 chr13 56047119 56047144 -45826025 + (TA)n Simple_repeat Simple_repeat 2 26 0 2448 57 0 19 chr13 56047144 56047459 -45825710 - AluY SINE Alu -2 309 1 997 269 105 22 chr13 56049728 56050194 -45822975 + L2 LINE L2 2784 3281 -32 244 360 24 23 chr13 56052557 56052703 -45820466 - MIR3 SINE MIR -25 183 29 2165 104 3 10 chr13 56052832 56053140 -45820029 - AluSq SINE Alu -7 306 1 258 183 43 49 chr13 56053376 56053540 -45819629 + (TATAA)n Simple_repeat Simple_repeat 3 165 0 * 266 178 38 38 chr13 56053475 56053632 -45819537 + (TAA)n Simple_repeat Simple_repeat 3 159 0 24 0 0 0 chr13 56053638 56053662 -45819507 + AT_rich Low_complexity Low_complexity 1 24 0 1800 175 51 3 chr13 56053730 56054061 -45819108 + MER7A DNA MER2_type 1 345 -1 1741 161 3 20 chr13 56054213 56054505 -45818664 - AluJo SINE Alu -25 287 1 1666 112 58 27 chr13 56054826 56055120 -45818049 + AluSx SINE Alu 3 305 -7 59 15 0 0 chr13 56055478 56055544 -45817625 + AT_rich Low_complexity Low_complexity 1 66 0 2142 117 7 7 chr13 56055611 56055919 -45817250 - AluSc SINE Alu -1 308 1 41 36 0 0 chr13 56055992 56056047 -45817122 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr13 56056191 56056218 -45816951 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 56056275 56056296 -45816873 + AT_rich Low_complexity Low_complexity 1 21 0 261 261 15 0 chr13 56056604 56056669 -45816500 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 206 183 21 43 chr13 56056710 56056803 -45816366 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 492 62 0 0 chr13 56056836 56056900 -45816269 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 1974 118 0 21 chr13 56056900 56057189 -45815980 - AluSq SINE Alu -30 283 1 225 178 0 0 chr13 56057430 56057475 -45815694 + CT-rich Low_complexity Low_complexity 4 48 0 213 94 0 0 chr13 56058823 56058855 -45814314 + (TA)n Simple_repeat Simple_repeat 2 33 0 229 329 12 12 chr13 56060938 56061020 -45812149 + MIR3 SINE MIR 126 207 -1 342 169 4 0 chr13 56062135 56062219 -45810950 - L1MC4 LINE L1 0 8041 7700 939 260 130 30 chr13 56062287 56062687 -45810482 + MLT1D LTR MaLR 64 503 -2 444 246 67 38 chr13 56062692 56062768 -45810401 - L1MC4 LINE L1 -75 7967 7895 365 70 18 0 chr13 56062768 56062825 -45810344 + (TG)n Simple_repeat Simple_repeat 1 58 0 444 246 67 38 chr13 56062825 56062988 -45810181 - L1MC4 LINE L1 -147 7895 7721 1217 250 130 51 chr13 56063106 56063598 -45809571 + MLT1F LTR MaLR 12 542 0 31 0 0 0 chr13 56063776 56063807 -45809362 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 56063861 56063891 -45809278 + AT_rich Low_complexity Low_complexity 1 30 0 306 220 100 40 chr13 56064346 56064446 -45808723 + Tigger5 DNA MER2_type 31 136 -2187 * 1227 161 23 5 chr13 56064444 56064661 -45808508 + Tigger5 DNA MER2_type 2103 2323 0 22 56 0 0 chr13 56064758 56064794 -45808375 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr13 56065400 56065435 -45807734 + AT_rich Low_complexity Low_complexity 1 35 0 1881 147 13 0 chr13 56065683 56065989 -45807180 + L1PB4 LINE L1 5476 5785 -371 1772 165 0 16 chr13 56065989 56066292 -45806877 + AluSx SINE Alu 1 298 -14 449 131 12 0 chr13 56066296 56066380 -45806789 + (TA)n Simple_repeat Simple_repeat 2 86 0 1716 195 27 8 chr13 56066385 56066759 -45806410 + L1PB4 LINE L1 5776 6156 0 217 325 94 49 chr13 56067012 56067215 -45805954 + MIR SINE MIR 1 212 -50 22 35 0 0 chr13 56067217 56067246 -45805923 + AT_rich Low_complexity Low_complexity 1 29 0 2065 111 3 3 chr13 56067368 56067666 -45805503 - AluSp SINE Alu -11 302 5 567 53 0 0 chr13 56067898 56067973 -45805196 + (CA)n Simple_repeat Simple_repeat 2 76 0 193 276 17 35 chr13 56068305 56068363 -45804806 + L2 LINE L2 3253 3309 -4 417 129 0 0 chr13 56069127 56069197 -45803972 + (CA)n Simple_repeat Simple_repeat 2 71 0 181 146 49 0 chr13 56070170 56070211 -45802958 + MIR SINE MIR 65 107 -155 253 257 188 20 chr13 56070571 56070672 -45802497 - MIR3 SINE MIR -2 206 89 667 220 0 54 chr13 56070807 56070975 -45802194 + MER4E LTR ERV1 5 163 -616 * 1756 202 5 24 chr13 56070974 56071346 -45801823 + MER4D LTR ERV1 539 903 0 468 211 72 57 chr13 56071518 56071712 -45801457 + L1MC5 LINE L1 7729 7925 -36 788 287 16 20 chr13 56071816 56072063 -45801106 - MIR SINE MIR -3 259 14 255 303 113 7 chr13 56073246 56073388 -45799781 + L2 LINE L2 3149 3305 -8 391 357 28 28 chr13 56073707 56073889 -45799280 + L3 LINE CR1 1396 1577 0 22 56 0 0 chr13 56074101 56074137 -45799032 + AT_rich Low_complexity Low_complexity 1 36 0 29 78 0 0 chr13 56074299 56074363 -45798806 + AT_rich Low_complexity Low_complexity 1 64 0 326 331 47 34 chr13 56074825 56074973 -45798196 + L2 LINE L2 3133 3282 -31 1782 148 21 3 chr13 56075129 56075419 -45797750 - AluSc SINE Alu -14 295 1 192 40 0 0 chr13 56075529 56075554 -45797615 + (TG)n Simple_repeat Simple_repeat 2 26 0 27 0 0 0 chr13 56075940 56075967 -45797202 + AT_rich Low_complexity Low_complexity 1 27 0 25 65 0 0 chr13 56076086 56076132 -45797037 + AT_rich Low_complexity Low_complexity 1 46 0 3684 19 0 0 chr13 56076176 56076602 -45796567 - L1PA2 LINE L1 -2 6153 5728 5040 22 0 0 chr13 56076602 56077198 -45795971 + L1P LINE L1 4649 5244 -902 202 317 146 32 chr13 56078020 56078143 -45795026 - L3 LINE CR1 -1200 377 241 1727 157 13 33 chr13 56078506 56078806 -45794363 - AluJo SINE Alu -18 294 1 22 0 0 0 chr13 56078872 56078894 -45794275 + AT_rich Low_complexity Low_complexity 1 22 0 1865 292 87 15 chr13 56079737 56080543 -45792626 + L2 LINE L2 1584 2447 -867 302 261 47 56 chr13 56080752 56080913 -45792256 - L1M4 LINE L1 -311 5810 5668 302 303 131 8 chr13 56080918 56081040 -45792129 - MIR SINE MIR -73 189 53 26 0 0 0 chr13 56081695 56081721 -45791448 + AT_rich Low_complexity Low_complexity 1 26 0 24 77 0 0 chr13 56082925 56082977 -45790192 + AT_rich Low_complexity Low_complexity 1 52 0 258 179 0 0 chr13 56086928 56086984 -45786185 + (TA)n Simple_repeat Simple_repeat 2 57 0 1597 207 65 24 chr13 56088130 56088502 -45784667 + MLT1B LTR MaLR 4 390 0 1338 236 23 40 chr13 56088827 56089174 -45783995 + MER58B DNA MER1_type 1 341 0 195 262 0 0 chr13 56089651 56089693 -45783476 - MIR SINE MIR -220 42 1 225 0 0 0 chr13 56089922 56089947 -45783222 + (TA)n Simple_repeat Simple_repeat 2 26 0 316 282 95 56 chr13 56090142 56090319 -45782850 + MIR SINE MIR 19 199 -63 778 256 101 27 chr13 56091069 56091288 -45781881 + MIR SINE MIR 6 240 -22 396 156 0 0 chr13 56092537 56092601 -45780568 + FLAM_A SINE Alu 2 65 -68 27 29 0 0 chr13 56093808 56093842 -45779327 + AT_rich Low_complexity Low_complexity 1 34 0 31 26 0 0 chr13 56095484 56095522 -45777647 + AT_rich Low_complexity Low_complexity 1 38 0 393 274 41 34 chr13 56096526 56096672 -45776497 + MIR SINE MIR 112 258 -4 306 180 0 0 chr13 56096724 56096785 -45776384 + (TA)n Simple_repeat Simple_repeat 2 62 0 52 41 0 0 chr13 56097180 56097253 -45775916 + AT_rich Low_complexity Low_complexity 1 73 0 2032 47 0 12 chr13 56098459 56098714 -45774455 - AluY SINE Alu -5 306 55 298 294 156 12 chr13 56098755 56098915 -45774254 + MIR SINE MIR 78 260 -2 2072 114 10 3 chr13 56099222 56099520 -45773649 - AluSc SINE Alu -9 300 1 22 0 0 0 chr13 56100809 56100831 -45772338 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 56100881 56100903 -45772266 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 56101278 56101300 -45771869 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 56101912 56101938 -45771231 + AT_rich Low_complexity Low_complexity 1 26 0 225 267 0 0 chr13 56101948 56102008 -45771161 + L1MC4 LINE L1 6644 6703 -1339 22 56 0 0 chr13 56102531 56102567 -45770602 + AT_rich Low_complexity Low_complexity 1 36 0 279 150 0 0 chr13 56103727 56103787 -45769382 + (TC)n Simple_repeat Simple_repeat 2 61 0 264 30 0 0 chr13 56103797 56103830 -45769339 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 68 0 0 chr13 56104366 56104410 -45768759 + AT_rich Low_complexity Low_complexity 1 44 0 35 24 0 0 chr13 56104666 56104708 -45768461 + AT_rich Low_complexity Low_complexity 1 42 0 34 65 0 0 chr13 56105116 56105178 -45767991 + AT_rich Low_complexity Low_complexity 1 62 0 256 333 108 23 chr13 56106680 56106809 -45766360 - L2 LINE L2 0 3272 3133 * 772 289 137 56 chr13 56106796 56107580 -45765589 + L2 LINE L2 2454 3299 -14 223 216 171 90 chr13 56107773 56107884 -45765285 + L2 LINE L2 3179 3298 -15 22 0 0 0 chr13 56110118 56110140 -45763029 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr13 56111964 56111987 -45761182 + (T)n Simple_repeat Simple_repeat 1 23 0 2096 113 7 19 chr13 56112004 56112289 -45760880 + AluSq SINE Alu 1 283 -30 228 100 0 0 chr13 56112289 56112329 -45760840 + (CATA)n Simple_repeat Simple_repeat 2 41 0 2096 113 7 19 chr13 56112329 56112353 -45760816 + AluSq SINE Alu 283 306 -7 186 290 151 0 chr13 56113583 56113676 -45759493 - MIR SINE MIR 0 262 156 208 291 51 38 chr13 56114451 56114530 -45758639 + L2 LINE L2 3193 3272 0 218 336 56 56 chr13 56114718 56114825 -45758344 - L2 LINE L2 -20 3293 3187 200 333 130 0 chr13 56115181 56115304 -45757865 - MIR SINE MIR -122 140 2 548 160 0 9 chr13 56115541 56115647 -45757522 + GA-rich Low_complexity Low_complexity 2 106 0 21 0 0 0 chr13 56118082 56118103 -45755066 + AT_rich Low_complexity Low_complexity 1 21 0 1804 159 3 19 chr13 56118672 56118986 -45754183 + AluSx SINE Alu 4 312 0 22 35 0 0 chr13 56119963 56119992 -45753177 + AT_rich Low_complexity Low_complexity 1 29 0 205 240 140 70 chr13 56120337 56120437 -45752732 - L2 LINE L2 -20 3293 3187 2076 181 45 9 chr13 56121211 56121653 -45751516 - L1MA4 LINE L1 -5 6295 5838 21 36 0 0 chr13 56121709 56121737 -45751432 + AT_rich Low_complexity Low_complexity 1 28 0 564 65 0 0 chr13 56122805 56122882 -45750287 + (TA)n Simple_repeat Simple_repeat 1 77 0 387 41 0 0 chr13 56122881 56122930 -45750239 + (GA)n Simple_repeat Simple_repeat 2 50 0 * 1273 90 6 6 chr13 56122939 56123105 -45750064 + AluSq SINE Alu 3 168 -145 390 192 39 0 chr13 56123126 56123282 -45749887 + (TA)n Simple_repeat Simple_repeat 2 163 0 211 151 38 75 chr13 56123260 56123446 -45749723 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 * 308 233 47 23 chr13 56123459 56123545 -45749624 + L1MC4 LINE L1 6616 6703 -1339 29 90 0 0 chr13 56123585 56123663 -45749506 + AT_rich Low_complexity Low_complexity 1 78 0 269 50 0 25 chr13 56123680 56123720 -45749449 + (TA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr13 56124872 56124895 -45748274 + AT_rich Low_complexity Low_complexity 1 23 0 627 285 25 15 chr13 56125084 56125284 -45747885 + MER105 DNA DNA 2 203 -1 23 0 0 0 chr13 56125296 56125319 -45747850 + AT_rich Low_complexity Low_complexity 1 23 0 2199 114 3 0 chr13 56125373 56125679 -45747490 - AluSg SINE Alu -3 307 1 22 70 0 0 chr13 56126330 56126373 -45746796 + AT_rich Low_complexity Low_complexity 1 43 0 2162 256 63 42 chr13 56127481 56128359 -45744810 + L1MC4 LINE L1 7144 8039 -3 219 160 20 40 chr13 56128359 56128409 -45744760 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 656 264 6 46 chr13 56131196 56131290 -45741879 - MER5B DNA MER1_type -3 175 90 1438 251 61 7 chr13 56131290 56131733 -45741436 + MLT1C LTR MaLR 1 467 0 656 264 6 46 chr13 56131733 56131812 -45741357 - MER5B DNA MER1_type -88 90 9 214 148 37 0 chr13 56132401 56132455 -45740714 + GA-rich Low_complexity Low_complexity 1 56 0 24 53 0 0 chr13 56134754 56134792 -45738377 + AT_rich Low_complexity Low_complexity 1 38 0 1759 140 55 3 chr13 56134952 56135245 -45737924 - AluSx SINE Alu -4 308 1 455 280 8 8 chr13 56135346 56135464 -45737705 - L2 LINE L2 0 3313 3196 841 231 109 73 chr13 56136266 56136707 -45736462 - L1MC5 LINE L1 -582 7379 6923 183 139 0 0 chr13 56137175 56137211 -45735958 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 397 9 9 chr13 56137541 56137657 -45735512 + L3 LINE CR1 230 345 -1232 472 327 139 0 chr13 56137681 56137846 -45735323 - MIR SINE MIR -73 189 2 593 341 196 30 chr13 56137872 56138717 -45734452 + L3 LINE CR1 436 1421 -156 289 200 0 0 chr13 56139319 56139369 -45733800 - MER58 DNA MER1_type 0 2420 2371 * 903 225 44 9 chr13 56139366 56139593 -45733576 - MER58 DNA MER1_type -2160 260 26 1997 73 0 0 chr13 56141769 56142017 -45731152 - AluY SINE Alu -7 304 57 246 311 117 14 chr13 56142416 56142563 -45730606 - MIR SINE MIR -64 198 35 21 0 0 0 chr13 56143807 56143828 -45729341 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 56144335 56144364 -45728805 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 56145239 56145260 -45727909 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 56149675 56149712 -45723457 + AT_rich Low_complexity Low_complexity 1 37 0 1700 124 40 0 chr13 56151318 56151592 -45721577 - AluSg SINE Alu -25 285 1 271 301 55 61 chr13 56151936 56152099 -45721070 - L2 LINE L2 -955 2359 2198 183 204 91 0 chr13 56152394 56152438 -45720731 + L2 LINE L2 3263 3310 -3 30 77 0 0 chr13 56153121 56153186 -45719983 + AT_rich Low_complexity Low_complexity 1 65 0 1771 152 29 0 chr13 56153599 56153876 -45719293 + AluJb SINE Alu 1 285 -27 24 67 0 0 chr13 56154693 56154738 -45718431 + AT_rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr13 56154753 56154780 -45718389 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr13 56154947 56154970 -45718199 + AT_rich Low_complexity Low_complexity 1 23 0 614 283 25 30 chr13 56155104 56155302 -45717867 - L2 LINE L2 -1 3312 3116 410 299 28 42 chr13 56155406 56155550 -45717619 - MIR3 SINE MIR -45 163 22 187 239 0 0 chr13 56160631 56160677 -45712492 + L2 LINE L2 3225 3270 -2 1863 166 7 0 chr13 56160910 56161217 -45711952 - AluSx SINE Alu -3 309 1 235 219 0 0 chr13 56161391 56161432 -45711737 - Charlie1b DNA MER1_type 0 523 483 1159 242 7 34 chr13 56161498 56161795 -45711374 - Charlie1b DNA MER1_type -234 289 1 1549 184 72 14 chr13 56162268 56162590 -45710579 + AluJb SINE Alu 1 339 0 27 0 0 0 chr13 56163184 56163211 -45709958 + AT_rich Low_complexity Low_complexity 1 27 0 994 310 134 30 chr13 56164855 56165626 -45707543 - L2 LINE L2 0 3313 2434 1018 241 108 6 chr13 56165627 56165950 -45707219 - MLT1A1 LTR MaLR 0 365 10 230 333 11 11 chr13 56165955 56166042 -45707127 - L2 LINE L2 -879 2435 2349 278 306 105 48 chr13 56166309 56166433 -45706736 - L2 LINE L2 -1 3271 3141 793 189 0 0 chr13 56167263 56167411 -45705758 + L1MA8 LINE L1 6123 6270 -21 308 272 97 56 chr13 56167627 56167822 -45705347 + MIR SINE MIR 47 249 -13 1187 163 156 4 chr13 56167873 56168130 -45705039 + AluJb SINE Alu 1 296 -6 2211 90 0 0 chr13 56168303 56168591 -45704578 - AluSg SINE Alu -22 288 1 21 0 0 0 chr13 56169148 56169169 -45704000 + AT_rich Low_complexity Low_complexity 1 21 0 300 143 0 0 chr13 56169846 56169902 -45703267 + (CA)n Simple_repeat Simple_repeat 1 56 0 215 225 28 14 chr13 56170519 56170590 -45702579 + (TA)n Simple_repeat Simple_repeat 1 72 0 196 222 0 0 chr13 56170733 56170769 -45702400 + L3 LINE CR1 1379 1414 -163 317 329 48 14 chr13 56170866 56171012 -45702157 - MER5B DNA MER1_type -1 177 27 25 0 0 0 chr13 56171422 56171447 -45701722 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 56172239 56172261 -45700908 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 56173752 56173774 -45699395 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 56175758 56175787 -45697382 + AT_rich Low_complexity Low_complexity 1 29 0 233 318 0 0 chr13 56177946 56178012 -45695157 - MIR SINE MIR -58 150 85 22 0 0 0 chr13 56178098 56178120 -45695049 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 56179115 56179140 -45694029 + AT_rich Low_complexity Low_complexity 1 25 0 2031 102 49 3 chr13 56179580 56179865 -45693304 - AluSq SINE Alu -15 298 1 29 0 0 0 chr13 56179886 56179915 -45693254 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 56182329 56182364 -45690805 + AT_rich Low_complexity Low_complexity 1 35 0 198 333 28 28 chr13 56182441 56182513 -45690656 - MIR SINE MIR -114 94 23 225 308 77 0 chr13 56182644 56182722 -45690447 + MIR SINE MIR 108 191 -71 776 344 50 37 chr13 56183172 56183691 -45689478 - L2 LINE L2 -236 3036 2513 1483 145 107 15 chr13 56183763 56184025 -45689144 - AluJb SINE Alu -25 287 2 195 42 0 0 chr13 56184031 56184055 -45689114 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1884 174 0 0 chr13 56184618 56184912 -45688257 + AluJb SINE Alu 9 302 -10 426 274 52 0 chr13 56185933 56186068 -45687101 - MIR SINE MIR -21 241 100 1500 176 44 4 chr13 56186506 56186779 -45686390 + AluJo SINE Alu 4 287 -25 2202 83 45 0 chr13 56186918 56187206 -45685963 - AluSq SINE Alu -11 302 2 198 103 0 0 chr13 56189137 56189166 -45684003 + (TA)n Simple_repeat Simple_repeat 1 29 0 210 203 62 0 chr13 56191085 56191149 -45682020 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 51 0 0 chr13 56192441 56192480 -45680689 + AT_rich Low_complexity Low_complexity 1 39 0 22 80 0 0 chr13 56193374 56193424 -45679745 + AT_rich Low_complexity Low_complexity 1 50 0 253 351 164 12 chr13 56193706 56193877 -45679292 - MIR3 SINE MIR -7 201 5 219 36 0 0 chr13 56194640 56194668 -45678501 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 184 341 66 0 chr13 56197699 56197790 -45675379 + L2 LINE L2 3115 3211 -61 280 277 161 8 chr13 56198038 56198168 -45675001 - MIR SINE MIR -37 225 76 201 239 0 0 chr13 56200702 56200748 -45672421 + (CAG)n Simple_repeat Simple_repeat 1 46 0 212 339 88 46 chr13 56201008 56201291 -45671878 + L2 LINE L2 2682 2976 -338 289 288 16 4 chr13 56201645 56201770 -45671399 - MIR SINE MIR -75 187 9 1690 165 50 0 chr13 56201855 56202152 -45671017 + AluJb SINE Alu 1 312 0 182 252 61 92 chr13 56202181 56202312 -45670857 - L2 LINE L2 -480 2834 2708 273 298 97 18 chr13 56202314 56202428 -45670741 + MIR3 SINE MIR 83 205 -3 180 0 0 0 chr13 56202455 56202475 -45670694 + (T)n Simple_repeat Simple_repeat 1 20 0 198 71 0 0 chr13 56203640 56203668 -45669501 + (CA)n Simple_repeat Simple_repeat 2 29 0 2137 128 0 0 chr13 56203999 56204311 -45668858 - AluSx SINE Alu 0 312 1 241 274 52 85 chr13 56204399 56204647 -45668522 + L2 LINE L2 2816 3055 -217 340 322 0 71 chr13 56204777 56204960 -45668209 - MER5B DNA MER1_type -2 176 7 196 350 87 10 chr13 56205032 56205135 -45668034 + L2 LINE L2 3185 3295 -18 2164 106 7 10 chr13 56205817 56206118 -45667051 - AluSx SINE Alu -8 304 5 300 27 0 0 chr13 56206584 56206621 -45666548 + (TAA)n Simple_repeat Simple_repeat 1 37 0 295 248 135 23 chr13 56207221 56207354 -45665815 + MIR SINE MIR 95 242 -20 351 352 107 0 chr13 56209992 56210151 -45663018 - MIR3 SINE MIR -3 205 30 228 228 0 0 chr13 56211259 56211316 -45661853 + (TA)n Simple_repeat Simple_repeat 1 57 0 2144 91 3 17 chr13 56212777 56213074 -45660095 + AluSx SINE Alu 1 293 -19 25 0 0 0 chr13 56213086 56213111 -45660058 + AT_rich Low_complexity Low_complexity 1 25 0 2328 82 7 3 chr13 56216094 56216399 -45656770 + AluSq SINE Alu 1 306 -7 347 256 123 54 chr13 56217601 56217804 -45655365 - MLT1L LTR MaLR -384 231 15 24 32 0 0 chr13 56218568 56218599 -45654570 + AT_rich Low_complexity Low_complexity 1 31 0 220 321 59 64 chr13 56218616 56218803 -45654366 + MIR SINE MIR 5 190 -72 1480 179 112 3 chr13 56219072 56219385 -45653784 + MER7A DNA MER2_type 2 346 0 308 304 170 0 chr13 56219434 56219605 -45653564 + MIR SINE MIR 63 262 0 24 67 0 0 chr13 56220486 56220531 -45652638 + AT_rich Low_complexity Low_complexity 1 45 0 957 186 0 6 chr13 56221259 56221436 -45651733 + AluJb SINE Alu 137 312 0 1124 180 0 0 chr13 56221490 56221668 -45651501 + AluJb SINE Alu 74 251 -61 603 112 0 0 chr13 56221688 56221786 -45651383 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 21 0 0 0 chr13 56222364 56222385 -45650784 + AT_rich Low_complexity Low_complexity 1 21 0 194 256 49 61 chr13 56222980 56223062 -45650107 - L3 LINE CR1 -1 1576 1496 718 361 149 9 chr13 56223205 56223743 -45649426 - L3 LINE CR1 -92 1485 873 22 56 0 0 chr13 56224060 56224096 -45649073 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr13 56224872 56224907 -45648262 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 56224947 56224968 -45648201 + AT_rich Low_complexity Low_complexity 1 21 0 290 158 0 53 chr13 56225018 56225094 -45648075 + L1PA7 LINE L1 5950 6021 -133 247 277 179 76 chr13 56225440 56225664 -45647505 - L3 LINE CR1 -595 982 736 2056 115 3 10 chr13 56225854 56226159 -45647010 + AluSq SINE Alu 1 303 -10 218 175 0 0 chr13 56228174 56228214 -45644955 + (TG)n Simple_repeat Simple_repeat 2 41 0 1978 133 23 16 chr13 56230455 56230764 -45642405 + AluSq SINE Alu 3 313 0 25 0 0 0 chr13 56232356 56232381 -45640788 + AT_rich Low_complexity Low_complexity 1 25 0 2210 125 0 0 chr13 56232382 56232694 -45640475 + AluSq SINE Alu 1 312 -1 1984 149 6 2 chr13 56232902 56233258 -45639911 + MER1A DNA MER1_type 1 412 -121 2133 109 7 0 chr13 56233501 56233795 -45639374 - AluSq SINE Alu -17 296 1 206 32 32 0 chr13 56234780 56234811 -45638358 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2202 111 0 0 chr13 56234995 56235292 -45637877 - AluSc SINE Alu -8 301 5 252 149 0 0 chr13 56235860 56235907 -45637262 + (TCCC)n Simple_repeat Simple_repeat 3 49 0 1571 185 7 13 chr13 56235929 56236237 -45636932 - AluJo SINE Alu -6 306 1 1634 97 155 0 chr13 56236981 56237239 -45635930 + AluSc SINE Alu 1 298 -1 1571 195 0 14 chr13 56237598 56237895 -45635274 + AluJb SINE Alu 1 293 -19 23 0 0 0 chr13 56237895 56237918 -45635251 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 56237930 56237954 -45635215 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 56238312 56238346 -45634823 + AT_rich Low_complexity Low_complexity 1 34 0 340 297 63 1 chr13 56238702 56238854 -45634315 + MIR SINE MIR 38 197 -65 21 0 0 0 chr13 56238878 56238899 -45634270 + AT_rich Low_complexity Low_complexity 1 21 0 570 344 115 55 chr13 56240928 56241798 -45631371 + L2 LINE L2 2054 2975 -339 26 0 0 0 chr13 56242051 56242077 -45631092 + AT_rich Low_complexity Low_complexity 1 26 0 225 354 0 30 chr13 56243038 56243137 -45630032 + MIR SINE MIR 15 110 -152 231 88 0 0 chr13 56244122 56244156 -45629013 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 181 167 37 0 chr13 56244484 56244538 -45628631 + (TA)n Simple_repeat Simple_repeat 1 56 0 231 294 71 33 chr13 56244591 56244802 -45628367 + L1ME4a LINE L1 5797 6015 -106 1753 169 3 3 chr13 56244892 56245182 -45627987 - AluJb SINE Alu -18 294 5 356 241 56 28 chr13 56246209 56246317 -45626852 + MER103 DNA DNA 55 165 -1 23 0 0 0 chr13 56247895 56247918 -45625251 + AT_rich Low_complexity Low_complexity 1 23 0 1835 153 0 0 chr13 56247930 56248204 -45624965 + AluJo SINE Alu 3 276 -36 659 295 14 32 chr13 56248622 56248839 -45624330 - MIR SINE MIR -34 228 16 331 321 18 9 chr13 56248847 56248956 -45624213 - MIR SINE MIR -150 112 3 336 321 175 36 chr13 56248987 56249267 -45623902 - L2 LINE L2 -10 3262 2944 414 39 0 0 chr13 56249289 56249341 -45623828 + (CA)n Simple_repeat Simple_repeat 2 53 0 208 75 25 25 chr13 56249744 56249784 -45623385 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 2412 83 0 10 chr13 56249786 56250099 -45623070 - AluSg SINE Alu 0 310 1 1497 164 48 45 chr13 56250548 56250569 -45622600 + MER44D DNA MER2_type 4 23 -2468 2476 40 0 52 chr13 56250569 56250896 -45622273 - AluY SINE Alu -1 310 1 1497 164 48 45 chr13 56250896 56251209 -45621960 + MER44D DNA MER2_type 23 609 0 225 65 0 0 chr13 56251474 56251505 -45621664 + (CA)n Simple_repeat Simple_repeat 2 32 0 391 318 60 13 chr13 56252103 56252254 -45620915 - MIR SINE MIR -1 261 104 665 199 26 7 chr13 56253347 56253498 -45619671 + L1PA16 LINE L1 6004 6157 -9 469 313 83 23 chr13 56253536 56253753 -45619416 - MIR SINE MIR -26 236 7 2148 119 7 0 chr13 56253829 56254124 -45619045 - AluSq SINE Alu -16 297 1 546 269 276 19 chr13 56254215 56254527 -45618642 + L2 LINE L2 2917 3308 -5 21 0 0 0 chr13 56254940 56254961 -45618208 + AT_rich Low_complexity Low_complexity 1 21 0 622 123 66 0 chr13 56255375 56255481 -45617688 + AluSg/x SINE Alu 187 299 -13 363 284 49 29 chr13 56255482 56255686 -45617483 + L1MC/D LINE L1 5285 5492 -867 2106 104 0 32 chr13 56257554 56257863 -45615306 + AluSg SINE Alu 1 299 -11 198 0 0 0 chr13 56257863 56257885 -45615284 + (GA)n Simple_repeat Simple_repeat 2 23 0 369 187 55 33 chr13 56260540 56260631 -45612538 + MLT1I LTR MaLR 73 165 -244 248 216 56 56 chr13 56260699 56260824 -45612345 + MLT1H LTR MaLR 420 544 -5 22 35 0 0 chr13 56261358 56261387 -45611782 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 56261938 56261960 -45611209 + AT_rich Low_complexity Low_complexity 1 22 0 184 48 48 48 chr13 56262225 56262267 -45610902 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 37 52 0 0 chr13 56263514 56263572 -45609597 + AT_rich Low_complexity Low_complexity 1 58 0 627 226 22 15 chr13 56264538 56264675 -45608494 + MER45A DNA AcHobo 16 153 -25 214 182 0 0 chr13 56265384 56265428 -45607741 + A-rich Low_complexity Low_complexity 1 44 0 2615 39 0 3 chr13 56266121 56266431 -45606738 - AluY SINE Alu -2 309 1 2735 198 18 9 chr13 56266556 56267101 -45606068 + MER44D DNA MER2_type 1 605 0 1090 182 0 44 chr13 56267138 56267341 -45605828 - AluJb SINE Alu -32 280 87 468 35 0 0 chr13 56267731 56267789 -45605380 + (TG)n Simple_repeat Simple_repeat 1 58 0 263 313 30 38 chr13 56267790 56267921 -45605248 - L2 LINE L2 -447 2867 2738 562 305 57 19 chr13 56268521 56268731 -45604438 + L3b LINE CR1 1335 1552 -31 21 0 0 0 chr13 56268915 56268936 -45604233 + AT_rich Low_complexity Low_complexity 1 21 0 186 209 0 0 chr13 56270350 56270393 -45602776 + T-rich Low_complexity Low_complexity 1 43 0 273 57 0 0 chr13 56271608 56271643 -45601526 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 325 301 144 23 chr13 56272295 56272468 -45600701 - MIR SINE MIR -67 195 2 301 300 15 39 chr13 56272453 56272583 -45600586 + MIR SINE MIR 2 128 -134 * 290 357 49 58 chr13 56273201 56273526 -45599643 + L2 LINE L2 2260 2581 -733 210 344 0 21 chr13 56273632 56273725 -45599444 + L2 LINE L2 2776 2866 -448 938 62 70 0 chr13 56274108 56274237 -45598932 - L1PA8 LINE L1 -4 6168 6031 24 32 0 0 chr13 56274478 56274509 -45598660 + AT_rich Low_complexity Low_complexity 1 31 0 360 0 0 0 chr13 56274783 56274823 -45598346 + (CA)n Simple_repeat Simple_repeat 1 40 0 185 342 95 37 chr13 56275305 56275495 -45597674 + L3 LINE CR1 1098 1298 -279 1502 179 44 14 chr13 56275581 56275877 -45597292 + AluJo SINE Alu 1 305 -7 201 336 43 43 chr13 56275889 56276029 -45597140 + L3 LINE CR1 1434 1573 -4 1436 176 8 0 chr13 56276914 56277164 -45596005 + AluJb SINE Alu 54 305 -7 1463 194 7 45 chr13 56280398 56280707 -45592462 + AluJb SINE Alu 1 297 -15 1616 194 0 0 chr13 56280950 56281269 -45591900 - AluSx SINE Alu 0 319 1 28 48 0 0 chr13 56281668 56281710 -45591459 + AT_rich Low_complexity Low_complexity 1 42 0 1009 8 0 25 chr13 56287373 56287495 -45585674 + L1PA3 LINE L1 6037 6155 0 224 351 0 0 chr13 56287854 56287928 -45585241 + (CATATA)n Simple_repeat Simple_repeat 1 74 0 31 0 0 0 chr13 56288234 56288265 -45584904 + AT_rich Low_complexity Low_complexity 1 31 0 244 286 0 88 chr13 56288475 56288566 -45584603 + MIR SINE MIR 51 133 -129 2330 58 27 0 chr13 56288566 56288861 -45584308 - AluY SINE Alu -8 303 1 247 277 179 76 chr13 56289167 56289391 -45583778 - L3 LINE CR1 -595 982 736 2254 106 0 0 chr13 56289581 56289882 -45583287 + AluSq SINE Alu 1 301 -12 938 242 42 5 chr13 56289911 56290126 -45583043 + MER58A DNA MER1_type 1 223 -1 1451 222 17 0 chr13 56290438 56290611 -45582558 - AluJb SINE Alu -10 302 120 204 40 0 0 chr13 56290611 56290636 -45582533 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1451 222 17 0 chr13 56290636 56290759 -45582410 - AluJb SINE Alu -192 120 1 1368 146 5 0 chr13 56291136 56291355 -45581814 + AluSg/x SINE Alu 91 310 -2 227 106 0 21 chr13 56291364 56291411 -45581758 + L1MC4 LINE L1 6658 6703 -1339 284 211 2 57 chr13 56291432 56291892 -45581277 + (CATATA)n Simple_repeat Simple_repeat 1 434 0 191 208 0 58 chr13 56291911 56292084 -45581085 + (CATATA)n Simple_repeat Simple_repeat 1 163 0 404 179 6 58 chr13 56292103 56292276 -45580893 + (CATATA)n Simple_repeat Simple_repeat 1 164 0 427 161 10 137 chr13 56292307 56292512 -45580657 + (TATATG)n Simple_repeat Simple_repeat 1 179 0 224 329 35 29 chr13 56292461 56292631 -45580538 + (TATG)n Simple_repeat Simple_repeat 1 171 0 * 346 227 0 111 chr13 56292567 56292765 -45580404 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 412 236 39 50 chr13 56292754 56292936 -45580233 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chr13 56293096 56293124 -45580045 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 56293758 56293786 -45579383 + AT_rich Low_complexity Low_complexity 1 28 0 205 296 78 113 chr13 56294052 56294167 -45579002 - L2 LINE L2 0 3272 3162 1856 95 106 0 chr13 56294255 56294519 -45578650 + AluSx SINE Alu 9 300 -12 198 331 120 53 chr13 56295111 56295377 -45577792 - L2 LINE L2 -834 2480 2197 2161 116 3 10 chr13 56295730 56296040 -45577129 + AluSg SINE Alu 3 310 0 2178 114 3 10 chr13 56296249 56296556 -45576613 + AluSq SINE Alu 1 305 -8 896 201 101 17 chr13 56296635 56296933 -45576236 - MER33 DNA MER1_type -1 323 1 2532 107 3 3 chr13 56299208 56299563 -45573606 + THE1A LTR MaLR 1 355 0 297 279 163 14 chr13 56300729 56300876 -45572293 - MIR SINE MIR -35 227 59 365 303 227 30 chr13 56301532 56301832 -45571337 + L3 LINE CR1 971 1329 -248 253 254 63 0 chr13 56302290 56302353 -45570816 + MIR SINE MIR 125 191 -71 2101 100 0 0 chr13 56303216 56303516 -45569653 + AluSc SINE Alu 1 300 0 243 0 0 0 chr13 56303915 56303942 -45569227 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr13 56304125 56304162 -45569007 + AT_rich Low_complexity Low_complexity 1 37 0 205 287 23 16 chr13 56304274 56304403 -45568766 + (TA)n Simple_repeat Simple_repeat 2 131 0 1948 135 0 26 chr13 56304575 56304878 -45568291 + AluSx SINE Alu 1 295 -17 1882 136 7 0 chr13 56306117 56306531 -45566638 - AluSx SINE Alu 0 416 1 282 214 18 0 chr13 56306763 56306819 -45566350 + MIR SINE MIR 206 262 0 226 205 221 49 chr13 56307027 56307149 -45566020 - MIR SINE MIR -67 195 53 266 183 0 33 chr13 56307234 56307294 -45565875 - L2 LINE L2 -1 3312 3255 222 288 24 48 chr13 56307347 56307472 -45565697 + L2 LINE L2 2932 3053 -219 399 98 0 0 chr13 56309701 56309762 -45563407 + (TC)n Simple_repeat Simple_repeat 2 62 0 275 239 0 68 chr13 56311727 56311815 -45561354 - MIR SINE MIR -88 174 93 25 0 0 0 chr13 56313226 56313251 -45559918 + AT_rich Low_complexity Low_complexity 1 25 0 2052 107 0 47 chr13 56313275 56313593 -45559576 - AluY SINE Alu -8 303 1 295 342 32 57 chr13 56313792 56313950 -45559219 - L2 LINE L2 -9 3263 3110 250 327 35 9 chr13 56314629 56314742 -45558427 + MIR SINE MIR 63 178 -84 2237 107 3 0 chr13 56314771 56315071 -45558098 - AluSx SINE Alu -11 301 1 21 57 0 0 chr13 56316710 56316745 -45556424 + AT_rich Low_complexity Low_complexity 1 35 0 434 269 102 24 chr13 56318841 56319008 -45554161 - MER5A DNA MER1_type -6 183 4 22 35 0 0 chr13 56319112 56319141 -45554028 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 56319155 56319184 -45553985 + AT_rich Low_complexity Low_complexity 1 29 0 335 250 17 60 chr13 56319274 56319390 -45553779 - MIR SINE MIR -64 198 88 423 254 104 45 chr13 56319502 56319703 -45553466 - L2 LINE L2 -3 3310 3098 2038 128 0 28 chr13 56319725 56320044 -45553125 + AluSp SINE Alu 1 310 -3 666 330 4 17 chr13 56320365 56320595 -45552574 - MIR SINE MIR -34 228 2 724 222 0 0 chr13 56320784 56320910 -45552259 - FLAM_A SINE Alu -7 126 1 786 223 45 0 chr13 56321503 56321660 -45551509 + FAM SINE Alu 2 165 -10 27 81 0 0 chr13 56321671 56321733 -45551436 + AT_rich Low_complexity Low_complexity 1 62 0 329 388 76 48 chr13 56322381 56322883 -45550286 + L2 LINE L2 2329 2844 -470 294 361 98 16 chr13 56322913 56323107 -45550062 - MIR SINE MIR -31 231 22 2577 40 0 0 chr13 56323133 56323434 -45549735 - AluY SINE Alu -10 301 1 442 280 63 7 chr13 56323550 56323693 -45549476 + MER5B DNA MER1_type 28 178 0 24 100 0 0 chr13 56324406 56324486 -45548683 + AT_rich Low_complexity Low_complexity 1 80 0 28 0 0 0 chr13 56325136 56325164 -45548005 + AT_rich Low_complexity Low_complexity 1 28 0 428 352 0 14 chr13 56326629 56326774 -45546395 - MER5A DNA MER1_type -1 188 46 242 390 26 26 chr13 56326651 56326805 -45546364 + MER5A DNA MER1_type 35 188 -1 * 378 0 0 0 chr13 56328565 56328607 -45544562 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 213 39 0 0 chr13 56329018 56329044 -45544125 + (CA)n Simple_repeat Simple_repeat 2 27 0 257 275 33 11 chr13 56331804 56331895 -45541274 - MIR SINE MIR -73 189 97 1253 156 59 114 chr13 56332251 56332558 -45540611 + AluJo SINE Alu 1 290 -22 389 279 146 18 chr13 56334496 56334661 -45538508 + MIR SINE MIR 4 189 -73 1490 168 98 0 chr13 56335083 56335391 -45537778 + AluJb SINE Alu 1 333 0 223 343 136 14 chr13 56335394 56335534 -45537635 - MIR3 SINE MIR -13 195 39 315 122 0 0 chr13 56336347 56336396 -45536773 + (TA)n Simple_repeat Simple_repeat 1 49 0 288 235 47 0 chr13 56336399 56336484 -45536685 + L1MC4 LINE L1 6614 6702 -1340 264 145 0 0 chr13 56336487 56336572 -45536597 + (TA)n Simple_repeat Simple_repeat 1 85 0 270 365 97 14 chr13 56336729 56336874 -45536295 + MIR SINE MIR 88 244 -18 182 321 107 27 chr13 56337129 56337241 -45535928 + L2 LINE L2 3176 3296 -17 267 54 0 0 chr13 56337244 56337281 -45535888 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 211 290 73 48 chr13 56337396 56337520 -45535649 - L2 LINE L2 -270 3002 2876 682 131 0 0 chr13 56337810 56337909 -45535260 + AluSg/x SINE Alu 196 294 -15 1790 157 4 7 chr13 56338100 56338380 -45534789 + AluJo SINE Alu 1 279 -33 313 280 104 43 chr13 56338438 56338586 -45534583 - MER102b DNA MER1_type -1091 337 171 2375 65 0 0 chr13 56338586 56338926 -45534243 - AluY SINE Alu 0 311 1 313 280 104 43 chr13 56338926 56338988 -45534181 - MER102b DNA MER1_type -1257 171 114 1775 168 10 3 chr13 56339407 56339717 -45533452 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 56339717 56339740 -45533429 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 56340166 56340189 -45532980 + AT_rich Low_complexity Low_complexity 1 23 0 186 333 92 17 chr13 56340761 56340881 -45532288 - L2 LINE L2 -5 3308 3180 210 37 0 0 chr13 56341213 56341240 -45531929 + (A)n Simple_repeat Simple_repeat 1 27 0 199 269 19 0 chr13 56341509 56341561 -45531608 + L2 LINE L2 3261 3313 0 292 304 64 40 chr13 56345459 56345584 -45527585 + MIR3 SINE MIR 78 205 -3 267 319 0 0 chr13 56345624 56345718 -45527451 + (TA)n Simple_repeat Simple_repeat 1 94 0 209 105 0 26 chr13 56345812 56345850 -45527319 + (CA)n Simple_repeat Simple_repeat 1 37 0 2013 112 0 33 chr13 56348629 56348932 -45524237 - AluSx SINE Alu -19 293 1 288 0 0 0 chr13 56349588 56349620 -45523549 + (CA)n Simple_repeat Simple_repeat 2 33 0 1836 153 30 0 chr13 56350780 56351075 -45522094 - AluJo SINE Alu -8 304 1 394 267 34 42 chr13 56351078 56351204 -45521965 - MIR SINE MIR -57 151 29 305 240 148 47 chr13 56351275 56351424 -45521745 - MIR SINE MIR -87 121 12 2175 105 3 0 chr13 56351686 56351982 -45521187 - AluSx SINE Alu -11 301 5 302 343 52 35 chr13 56352965 56353137 -45520032 + MIR SINE MIR 69 243 -19 381 43 0 0 chr13 56355565 56355612 -45517557 + (TA)n Simple_repeat Simple_repeat 1 47 0 594 322 12 0 chr13 56357283 56357454 -45515715 + MIR3 SINE MIR 31 203 -5 24 0 0 0 chr13 56358069 56358093 -45515076 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr13 56359826 56359865 -45513304 + AT_rich Low_complexity Low_complexity 1 39 0 1564 203 21 0 chr13 56361285 56361571 -45511598 + AluJo SINE Alu 1 292 -20 298 185 0 0 chr13 56362208 56362219 -45510950 + MER3 DNA MER1_type 37 47 -162 746 233 94 0 chr13 56362219 56362399 -45510770 - MER3 DNA MER1_type 0 209 13 2093 111 3 14 chr13 56363058 56363355 -45509814 - AluSx SINE Alu -18 294 1 189 0 0 0 chr13 56364668 56364689 -45508480 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr13 56364980 56365003 -45508166 + AT_rich Low_complexity Low_complexity 1 23 0 1622 161 52 0 chr13 56366452 56366719 -45506450 - AluJb SINE Alu -31 281 1 242 308 255 5 chr13 56367377 56367585 -45505584 - MIR SINE MIR 0 262 3 30 45 0 0 chr13 56368542 56368586 -45504583 + AT_rich Low_complexity Low_complexity 1 44 0 294 191 245 0 chr13 56368982 56369076 -45504093 + MIR SINE MIR 89 205 -57 202 154 26 0 chr13 56370351 56370390 -45502779 - L2 LINE L2 -1 3312 3273 363 301 122 19 chr13 56370464 56370677 -45502492 - MIR SINE MIR -6 256 22 257 349 54 8 chr13 56371040 56371169 -45502000 - MIR3 SINE MIR -7 201 67 2547 7 0 0 chr13 56373052 56373361 -45499808 + AluY SINE Alu 1 309 0 1134 89 56 28 chr13 56373627 56373807 -45499362 + L1P4 LINE L1 5607 5791 -377 231 231 0 0 chr13 56373800 56373852 -45499317 + L1MC4 LINE L1 6652 6703 -1339 * 272 311 0 0 chr13 56373844 56373934 -45499235 - L1MC4 LINE L1 -1339 6703 6614 2519 104 8 10 chr13 56373949 56374332 -45498837 + L1PA13 LINE L1 5782 6163 0 350 309 48 8 chr13 56374411 56374537 -45498632 - MIR3 SINE MIR -8 200 70 290 298 104 61 chr13 56374680 56374759 -45498410 - L2 LINE L2 -16 3297 3223 1058 204 12 70 chr13 56374759 56375051 -45498118 + MER33 DNA MER1_type 1 272 -2313 2203 110 7 0 chr13 56375051 56375361 -45497808 - AluSx SINE Alu 0 312 1 1058 204 12 70 chr13 56375361 56375411 -45497758 + MER33 DNA MER1_type 272 323 -1 290 298 104 61 chr13 56375411 56375783 -45497386 - L2 LINE L2 -90 3223 2734 254 282 60 43 chr13 56375783 56375900 -45497269 + L2 LINE L2 2557 2675 -639 848 310 35 20 chr13 56376334 56376679 -45496490 - LTR33 LTR ERVL -169 352 3 266 355 71 14 chr13 56376987 56377198 -45495971 - L2 LINE L2 -50 3263 3041 827 136 0 23 chr13 56377237 56377369 -45495800 + FLAM_C SINE Alu 5 133 0 26 0 0 0 chr13 56377863 56377889 -45495280 + AT_rich Low_complexity Low_complexity 1 26 0 299 196 76 22 chr13 56378584 56378676 -45494493 + MIR3 SINE MIR 106 202 -6 45 55 0 0 chr13 56378676 56378749 -45494420 + AT_rich Low_complexity Low_complexity 1 73 0 2065 104 7 0 chr13 56379050 56379330 -45493839 + AluSc SINE Alu 22 303 -6 31 26 0 0 chr13 56380346 56380384 -45492785 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr13 56381319 56381352 -45491817 + AT_rich Low_complexity Low_complexity 1 33 0 205 135 81 0 chr13 56381373 56381410 -45491759 + L2 LINE L2 1773 1812 -1502 22 56 0 0 chr13 56381471 56381507 -45491662 + AT_rich Low_complexity Low_complexity 1 36 0 188 261 0 0 chr13 56381747 56381793 -45491376 + L2 LINE L2 3267 3312 -1 2120 209 34 2 chr13 56382546 56383044 -45490125 - L1MB8 LINE L1 -2 6176 5663 23 33 0 0 chr13 56383874 56383904 -45489265 + AT_rich Low_complexity Low_complexity 1 30 0 225 325 106 0 chr13 56383949 56384100 -45489069 + L2 LINE L2 3140 3306 -7 240 316 59 29 chr13 56385551 56385687 -45487482 + MIR3 SINE MIR 16 155 -53 216 0 0 0 chr13 56390222 56390246 -45482923 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 527 282 0 0 chr13 56392867 56392991 -45480178 - MER94 DNA DNA -10 124 1 506 265 138 11 chr13 56393540 56393729 -45479440 - MIR SINE MIR -2 260 48 543 283 112 62 chr13 56393925 56394229 -45478940 + L2 LINE L2 2994 3312 -1 222 37 0 0 chr13 56394250 56394277 -45478892 + (CA)n Simple_repeat Simple_repeat 2 28 0 3197 5 37 5 chr13 56394901 56395276 -45477893 + L1PA2 LINE L1 5629 6015 -140 2354 92 0 0 chr13 56396581 56396884 -45476285 + AluY SINE Alu 8 310 -1 277 290 215 9 chr13 56396899 56397113 -45476056 + L2 LINE L2 2230 2487 -827 2124 137 0 3 chr13 56397188 56397494 -45475675 - AluSx SINE Alu -5 307 3 207 280 0 140 chr13 56397558 56397708 -45475461 + L2 LINE L2 2691 2819 -495 193 348 14 15 chr13 56399226 56399290 -45473879 - MIR SINE MIR -59 149 85 548 278 205 0 chr13 56399290 56399495 -45473674 + MIR SINE MIR 3 249 -13 1594 188 7 11 chr13 56399543 56399825 -45473344 + AluJb SINE Alu 1 281 -31 1072 90 78 0 chr13 56400337 56400504 -45472665 - L1MA1 LINE L1 0 6302 6123 1604 200 4 0 chr13 56400529 56400809 -45472360 - AluJb SINE Alu -27 285 5 2944 119 31 4 chr13 56402009 56402489 -45470680 + L1MA5A LINE L1 5795 6287 -10 1584 125 49 4 chr13 56403607 56403871 -45469298 + AluSx SINE Alu 1 276 -36 189 107 0 0 chr13 56403875 56403903 -45469266 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 399 369 29 15 chr13 56403957 56404163 -45469006 + MIR SINE MIR 36 244 -18 1403 134 116 51 chr13 56405797 56406073 -45467096 - AluJb SINE Alu -18 294 1 194 215 148 81 chr13 56414090 56414239 -45458930 - L3 LINE CR1 -97 1480 1322 24 77 0 0 chr13 56414357 56414409 -45458760 + AT_rich Low_complexity Low_complexity 1 52 0 1196 84 153 0 chr13 56415842 56416032 -45457137 - L1MA8 LINE L1 -199 6092 5874 420 117 0 0 chr13 56416117 56416194 -45456975 + (TC)n Simple_repeat Simple_repeat 1 77 0 299 248 0 40 chr13 56417405 56417506 -45455663 + (CATA)n Simple_repeat Simple_repeat 3 99 0 189 0 0 0 chr13 56419156 56419177 -45453992 + (A)n Simple_repeat Simple_repeat 1 21 0 204 241 0 127 chr13 56419960 56420039 -45453130 + MIR SINE MIR 64 132 -76 22 35 0 0 chr13 56420440 56420469 -45452700 + AT_rich Low_complexity Low_complexity 1 29 0 339 25 0 0 chr13 56421424 56421464 -45451705 + (CA)n Simple_repeat Simple_repeat 1 40 0 240 233 0 70 chr13 56422188 56422274 -45450895 + GA-rich Low_complexity Low_complexity 2 81 0 210 264 0 0 chr13 56422417 56422470 -45450699 + (CA)n Simple_repeat Simple_repeat 1 53 0 317 320 133 67 chr13 56422667 56423157 -45450012 - L1M2 LINE L1 -5742 1107 586 600 73 0 0 chr13 56423529 56423611 -45449558 + (CTG)n Simple_repeat Simple_repeat 1 82 0 724 165 0 18 chr13 56423636 56423806 -45449363 + (CCG)n Simple_repeat Simple_repeat 1 167 0 240 348 0 18 chr13 56424085 56424197 -45448972 + GA-rich Low_complexity Low_complexity 1 110 0 217 244 42 42 chr13 56424648 56424767 -45448402 + GA-rich Low_complexity Low_complexity 2 120 0 21 0 0 0 chr13 56425064 56425085 -45448084 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr13 56425650 56425673 -45447496 + (TTTTC)n Simple_repeat Simple_repeat 5 27 0 21 0 0 0 chr13 56425891 56425912 -45447257 + AT_rich Low_complexity Low_complexity 1 21 0 228 200 0 0 chr13 56426908 56426958 -45446211 + T-rich Low_complexity Low_complexity 1 50 0 266 321 0 0 chr13 56427407 56427488 -45445681 + C-rich Low_complexity Low_complexity 1 81 0 22 0 0 0 chr13 56428391 56428413 -45444756 + AT_rich Low_complexity Low_complexity 1 22 0 197 133 0 0 chr13 56431497 56431527 -45441642 + L3b LINE CR1 1436 1465 -118 182 274 48 16 chr13 56433487 56433549 -45439620 - L2 LINE L2 -38 3234 3171 22 0 0 0 chr13 56435249 56435271 -45437898 + AT_rich Low_complexity Low_complexity 1 22 0 454 124 51 4 chr13 56435271 56435513 -45437656 + (TA)n Simple_repeat Simple_repeat 1 253 0 22 56 0 0 chr13 56435925 56435961 -45437208 + AT_rich Low_complexity Low_complexity 1 36 0 213 218 0 18 chr13 56436079 56436134 -45437035 + (CA)n Simple_repeat Simple_repeat 1 54 0 195 42 0 0 chr13 56436776 56436800 -45436369 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 334 243 51 90 chr13 56437823 56438000 -45435169 - MIR SINE MIR -3 259 90 579 250 158 22 chr13 56438583 56438811 -45434358 + MIR SINE MIR 2 260 -2 1898 169 49 19 chr13 56439609 56439976 -45433193 - MLT1B LTR MaLR -6 384 7 233 280 0 0 chr13 56440021 56440071 -45433098 + L2 LINE L2 2709 2758 -556 2305 90 0 7 chr13 56440113 56440413 -45432756 - AluSg SINE Alu -12 298 1 2708 78 35 0 chr13 56440712 56441084 -45432085 + L1PA13 LINE L1 5778 6162 -1 26 74 0 0 chr13 56441313 56441367 -45431802 + AT_rich Low_complexity Low_complexity 1 54 0 314 194 28 125 chr13 56441703 56441847 -45431322 - MLT1H LTR MaLR 0 549 420 583 264 145 32 chr13 56441925 56441977 -45431192 - L1ME LINE L1 -457 5705 5660 1158 198 54 92 chr13 56441977 56442366 -45430803 + MLT1A2 LTR MaLR 1 374 0 583 264 145 32 chr13 56442366 56442933 -45430236 - L1ME LINE L1 -502 5660 5006 829 136 8 0 chr13 56443008 56443133 -45430036 + MER20 DNA MER1_type 93 218 -1 440 300 52 35 chr13 56443174 56443541 -45429628 - L1ME LINE L1 -3433 2713 2341 25 65 0 0 chr13 56443562 56443608 -45429561 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr13 56443660 56443688 -45429481 + AT_rich Low_complexity Low_complexity 1 28 0 1625 163 7 14 chr13 56443688 56443976 -45429193 - AluJb SINE Alu -26 286 1 1201 227 132 10 chr13 56444140 56444549 -45428620 - L1MC4 LINE L1 -813 7229 6771 709 229 73 73 chr13 56444677 56444857 -45428312 - L1MC4 LINE L1 -1261 6781 6599 188 67 33 0 chr13 56444857 56444887 -45428282 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 709 229 73 73 chr13 56444887 56445021 -45428148 - L1MC4 LINE L1 -1442 6600 6467 753 152 0 0 chr13 56445329 56445454 -45427715 - AluSg/x SINE Alu -14 298 174 436 145 14 0 chr13 56445454 56445523 -45427646 - AluS SINE Alu -232 70 1 21 36 0 0 chr13 56445739 56445767 -45427402 + AT_rich Low_complexity Low_complexity 1 28 0 331 304 110 58 chr13 56445939 56446321 -45426848 + MLT1K LTR MaLR 181 582 -6 1319 177 31 7 chr13 56446886 56447180 -45425989 + L1MB4 LINE L1 5879 6179 -1 560 140 120 0 chr13 56448624 56448724 -45424445 + FLAM_A SINE Alu 25 136 -6 285 279 87 19 chr13 56448888 56448992 -45424177 - MIR SINE MIR -36 226 116 198 0 0 0 chr13 56449547 56449569 -45423600 + (CCA)n Simple_repeat Simple_repeat 1 22 0 7405 32 1 7 chr13 56450641 56451738 -45421431 + L1PA4 LINE L1 5063 6154 -1 2079 120 0 3 chr13 56452524 56452815 -45420354 - AluSx SINE Alu -22 290 1 232 351 58 6 chr13 56453432 56453603 -45419566 + L2 LINE L2 3132 3311 -2 1975 117 25 52 chr13 56453603 56453970 -45419199 + L1MA8 LINE L1 5888 6244 -47 * 10490 174 19 5 chr13 56453968 56455935 -45417234 + L1MA4A LINE L1 3308 5321 -982 225 0 0 0 chr13 56455935 56455960 -45417209 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 10490 174 19 5 chr13 56455960 56456942 -45416227 + L1MA4A LINE L1 5321 6288 -15 572 188 0 26 chr13 56456942 56457059 -45416110 - Tigger7 DNA MER2_type -585 120 7 21 0 0 0 chr13 56457146 56457167 -45416002 + AT_rich Low_complexity Low_complexity 1 21 0 242 146 18 0 chr13 56457169 56457224 -45415945 + L1MA8 LINE L1 6232 6287 -4 321 286 32 56 chr13 56457279 56457405 -45415764 - L2 LINE L2 0 3313 3191 546 254 35 23 chr13 56457830 56458003 -45415166 - L1ME3A LINE L1 -8 6162 5988 3267 114 10 2 chr13 56458091 56458583 -45414586 - L1PB1 LINE L1 -1 6150 5655 187 293 222 42 chr13 56459037 56459204 -45413965 + MIR SINE MIR 30 226 -36 237 108 0 0 chr13 56459813 56459850 -45413319 + (CTG)n Simple_repeat Simple_repeat 1 37 0 1603 168 3 21 chr13 56460466 56460752 -45412417 + AluJo SINE Alu 9 289 -23 1565 160 74 12 chr13 56460793 56461118 -45412051 - L1MC1 LINE L1 0 6333 5989 337 236 22 0 chr13 56461195 56461284 -45411885 - MER112 DNA MER1_type -169 91 1 24 77 0 0 chr13 56462007 56462059 -45411110 + AT_rich Low_complexity Low_complexity 1 52 0 313 328 90 51 chr13 56462216 56462393 -45410776 + MIR SINE MIR 79 262 0 967 198 5 50 chr13 56462408 56462610 -45410559 - AluJo SINE Alu -97 215 23 1205 183 104 10 chr13 56462981 56463270 -45409899 - L1MC2 LINE L1 -6 6338 6023 351 0 0 0 chr13 56463301 56463340 -45409829 + (TC)n Simple_repeat Simple_repeat 2 40 0 289 317 168 62 chr13 56463404 56464085 -45409084 - L2 LINE L2 -2 3270 2524 240 289 44 30 chr13 56464183 56464318 -45408851 + L1MC4a LINE L1 5814 5950 -1858 1293 226 71 12 chr13 56464339 56464662 -45408507 - MER2 DNA MER2_type -2 342 1 2546 61 0 0 chr13 56464840 56465151 -45408018 + AluY SINE Alu 1 311 0 246 222 12 49 chr13 56465417 56465498 -45407671 + LTR33A LTR ERVL 446 523 0 1528 332 106 28 chr13 56465711 56466887 -45406282 + L2 LINE L2 1642 2971 -342 2063 120 0 19 chr13 56466887 56467204 -45405965 - AluSx SINE Alu -1 311 1 1528 332 106 28 chr13 56467204 56467577 -45405592 + L2 LINE L2 2971 3313 0 313 314 39 10 chr13 56467956 56468058 -45405111 + MIR3 SINE MIR 78 182 -26 220 247 86 12 chr13 56468343 56468424 -45404745 - MIR SINE MIR -62 200 114 213 215 13 51 chr13 56468575 56468654 -45404515 + (TG)n Simple_repeat Simple_repeat 1 76 0 429 331 137 53 chr13 56468766 56469489 -45403680 + L2 LINE L2 2033 2816 -498 246 32 0 0 chr13 56469555 56469586 -45403583 + (TG)n Simple_repeat Simple_repeat 1 31 0 667 359 38 23 chr13 56469588 56469931 -45403238 + L2 LINE L2 2923 3270 -2 751 308 86 24 chr13 56470434 56470808 -45402361 + MER115 DNA AcHobo 297 693 0 234 91 0 0 chr13 56470877 56470910 -45402259 + (T)n Simple_repeat Simple_repeat 1 33 0 607 273 23 34 chr13 56471878 56472054 -45401115 - MIR SINE MIR -55 207 34 502 124 14 38 chr13 56473604 56473822 -45399347 + (TA)n Simple_repeat Simple_repeat 1 212 0 2316 94 0 0 chr13 56473994 56474293 -45398876 - AluSc SINE Alu -10 299 1 370 309 24 32 chr13 56474463 56474589 -45398580 - L2 LINE L2 0 3313 3189 474 315 132 37 chr13 56474591 56474994 -45398175 + L2 LINE L2 2498 2938 -376 223 120 120 40 chr13 56475265 56475315 -45397854 + MIR SINE MIR 209 262 0 21 57 0 0 chr13 56477416 56477451 -45395718 + AT_rich Low_complexity Low_complexity 1 35 0 306 0 0 0 chr13 56477787 56477821 -45395348 + (TG)n Simple_repeat Simple_repeat 2 35 0 591 239 188 10 chr13 56477956 56478153 -45395016 + MIR SINE MIR 6 237 -25 192 77 0 0 chr13 56478524 56478550 -45394619 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 761 287 80 25 chr13 56478767 56479081 -45394088 + MER102b DNA MER1_type 1 331 -10 614 239 78 0 chr13 56479233 56479400 -45393769 - MER20 DNA MER1_type 0 219 40 30 89 0 0 chr13 56480177 56480256 -45392913 + AT_rich Low_complexity Low_complexity 1 79 0 1906 154 6 31 chr13 56481868 56482186 -45390983 + AluJb SINE Alu 1 310 -2 21 36 0 0 chr13 56483313 56483341 -45389828 + AT_rich Low_complexity Low_complexity 1 28 0 245 258 0 133 chr13 56483545 56483665 -45389504 + L2 LINE L2 3210 3313 0 21 0 0 0 chr13 56484172 56484193 -45388976 + AT_rich Low_complexity Low_complexity 1 21 0 2071 108 0 14 chr13 56484193 56484479 -45388690 + AluSq SINE Alu 1 282 -31 235 64 21 21 chr13 56484482 56484529 -45388640 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 641 313 82 21 chr13 56484634 56484915 -45388254 - LTR33A LTR ERVL -219 304 7 268 184 40 13 chr13 56486666 56486742 -45386427 - L1MA7 LINE L1 0 6291 6214 473 167 0 0 chr13 56486743 56486821 -45386348 - MADE1 DNA Mariner 0 80 3 1590 141 6 29 chr13 56486839 56487181 -45385988 - MER4A LTR ERV1 -17 647 261 521 104 42 21 chr13 56487181 56487277 -45385892 - MER4A LTR ERV1 -566 98 1 2463 194 35 2 chr13 56487284 56487795 -45385374 - L1MA7 LINE L1 -77 6214 5687 697 316 52 0 chr13 56487987 56488218 -45384951 - MIR SINE MIR -14 248 6 253 376 64 24 chr13 56488279 56488404 -45384765 - L2 LINE L2 -2 3270 3141 204 404 61 19 chr13 56488584 56488668 -45384501 - L2 LINE L2 -340 2974 2895 1946 132 24 37 chr13 56488668 56489048 -45384121 + THE1C LTR MaLR 1 375 0 204 404 61 19 chr13 56489048 56489324 -45383845 - L2 LINE L2 -419 2895 2599 208 282 70 35 chr13 56489529 56489671 -45383498 - L2 LINE L2 -804 2510 2364 790 162 7 0 chr13 56489697 56489839 -45383330 + MSTB2 LTR MaLR 5 147 -310 2783 16 0 12 chr13 56489863 56490182 -45382987 + AluYb8 SINE Alu 1 315 -3 497 323 38 68 chr13 56490261 56490688 -45382481 - L2 LINE L2 -1215 2099 1686 241 152 24 0 chr13 56490968 56491020 -45382149 + Alu SINE Alu 84 130 -3 853 303 53 61 chr13 56491035 56491729 -45381440 + L2 LINE L2 2539 3232 -81 413 241 0 9 chr13 56492658 56492766 -45380403 - L1 LINE L1 -1916 4230 4124 379 200 0 13 chr13 56493937 56494012 -45379157 - L2 LINE L2 -4 3309 3236 1188 261 98 29 chr13 56494053 56494470 -45378699 - MLT1C LTR MaLR -7 460 15 190 315 111 74 chr13 56494633 56494903 -45378266 - L2 LINE L2 -419 2895 2616 408 355 94 25 chr13 56495248 56495611 -45377558 - L2 LINE L2 -702 2612 2225 186 43 0 0 chr13 56495973 56495996 -45377173 + (T)n Simple_repeat Simple_repeat 1 23 0 230 304 0 0 chr13 56496685 56496754 -45376415 + MLT-int LTR MaLR 54 122 -1613 509 338 17 4 chr13 56496817 56497051 -45376118 + MLT1-int LTR MaLR 308 544 -827 1514 183 4 11 chr13 56497480 56497753 -45375416 + AluJo SINE Alu 3 273 -39 2171 127 121 11 chr13 56497754 56498133 -45375036 + MSTA LTR MaLR 1 421 -7 258 233 122 22 chr13 56498152 56498242 -45374927 + MLT1-int LTR MaLR 792 890 -481 1367 294 117 14 chr13 56498741 56499261 -45373908 + MLT1G1 LTR MaLR 9 582 -13 25 31 0 0 chr13 56499663 56499695 -45373474 + AT_rich Low_complexity Low_complexity 1 32 0 22 99 0 0 chr13 56500656 56500727 -45372442 + AT_rich Low_complexity Low_complexity 1 71 0 303 364 45 18 chr13 56501627 56501847 -45371322 - L2 LINE L2 -2833 481 256 362 326 179 42 chr13 56502149 56502456 -45370713 - L3 LINE CR1 -151 1426 1078 239 279 67 87 chr13 56502419 56502627 -45370542 - L2 LINE L2 -1423 1891 1688 * 208 308 13 0 chr13 56502929 56503007 -45370162 - MIR SINE MIR -6 256 178 * 581 332 63 13 chr13 56503006 56503244 -45369925 + MIR SINE MIR 13 262 0 256 270 67 43 chr13 56504671 56504820 -45368349 + MIR SINE MIR 34 184 -66 279 0 0 0 chr13 56505485 56505516 -45367653 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr13 56506678 56506701 -45366468 + AT_rich Low_complexity Low_complexity 1 23 0 1425 252 166 30 chr13 56506874 56507573 -45365596 - LTR50 LTR ERVL 0 795 2 2078 122 0 10 chr13 56507635 56507956 -45365213 + AluSx SINE Alu 1 312 0 2915 144 19 2 chr13 56508118 56508598 -45364571 - L1MB3 LINE L1 -53 6366 5879 1911 203 39 20 chr13 56508673 56509058 -45364111 + MER39 LTR ERV1 260 655 -52 2618 110 0 0 chr13 56509058 56509422 -45363747 + THE1B LTR MaLR 1 364 0 1911 203 39 20 chr13 56509422 56509475 -45363694 + MER39 LTR ERV1 655 706 -1 6064 211 52 33 chr13 56509476 56510822 -45362347 - L1MB3 LINE L1 -538 5881 4562 249 33 0 0 chr13 56510822 56510852 -45362317 + (TG)n Simple_repeat Simple_repeat 2 31 0 6064 211 52 33 chr13 56510852 56511315 -45361854 - L1MB3 LINE L1 -1857 4562 4028 1167 214 94 40 chr13 56511315 56511689 -45361480 - MSTD LTR MaLR -2 394 1 6064 211 52 33 chr13 56511689 56511854 -45361315 - L1MB3 LINE L1 -2391 4028 3868 411 250 11 0 chr13 56511875 56511967 -45361202 - MER70B LTR ERVL -32 546 454 2863 266 25 18 chr13 56512410 56513467 -45359702 - L1MB3 LINE L1 -2493 3889 2826 887 262 122 25 chr13 56513469 56513790 -45359379 - MLT1A1 LTR MaLR -13 352 1 3654 171 53 35 chr13 56513790 56515236 -45357933 - L1MB3 LINE L1 -3552 2830 1265 418 212 0 12 chr13 56515336 56515421 -45357748 - FRAM SINE Alu -43 133 50 22 35 0 0 chr13 56517843 56517872 -45355297 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr13 56517911 56517931 -45355238 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6535 28 0 0 chr13 56518960 56519818 -45353351 + L1P1 LINE L1 4608 5465 -690 7563 26 6 0 chr13 56519818 56520770 -45352399 + L1PA3 LINE L1 5201 6154 -1 213 139 0 23 chr13 56521439 56521482 -45351687 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 54 49 0 0 chr13 56522612 56522694 -45350475 + AT_rich Low_complexity Low_complexity 1 82 0 255 312 53 63 chr13 56523100 56523289 -45349880 + L2 LINE L2 2905 3091 -181 216 0 0 0 chr13 56525591 56525615 -45347554 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr13 56525798 56525822 -45347347 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 56527502 56527523 -45345646 + AT_rich Low_complexity Low_complexity 1 21 0 412 276 76 48 chr13 56530346 56530491 -45342678 - MER5A DNA MER1_type -40 149 1 2162 118 0 16 chr13 56531102 56531407 -45341762 - AluSx SINE Alu -12 300 1 494 235 36 10 chr13 56531845 56532047 -45341122 + MLT1J2 LTR MaLR 3 175 -272 1158 55 0 0 chr13 56534528 56534674 -45338495 + L1PA8 LINE L1 6025 6170 -2 200 246 18 0 chr13 56535021 56535078 -45338091 + (TA)n Simple_repeat Simple_repeat 1 58 0 323 239 123 123 chr13 56535104 56535242 -45337927 + MIR SINE MIR 3 141 -67 28 0 0 0 chr13 56536049 56536077 -45337092 + AT_rich Low_complexity Low_complexity 1 28 0 216 320 147 7 chr13 56536338 56536488 -45336681 - MIR SINE MIR -44 218 48 326 302 38 19 chr13 56536514 56536620 -45336549 + MIR SINE MIR 155 262 0 289 224 0 71 chr13 56537375 56537473 -45335696 + LTR67 LTR ERVL 457 547 -10 438 337 52 0 chr13 56537474 56537723 -45335446 + MIR SINE MIR 1 262 0 24 67 0 0 chr13 56538866 56538911 -45334258 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr13 56538975 56538997 -45334172 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 56539688 56539719 -45333450 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr13 56539856 56539877 -45333292 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr13 56542339 56542401 -45330768 + AT_rich Low_complexity Low_complexity 1 62 0 5428 95 16 4 chr13 56542401 56543204 -45329965 - L1MA2 LINE L1 0 6304 5492 700 250 37 45 chr13 56543358 56543618 -45329551 + L1MCa LINE L1 2 240 -5805 210 416 40 0 chr13 56544270 56544395 -45328774 - L2 LINE L2 0 3272 3143 604 217 0 0 chr13 56545557 56545672 -45327497 + 5S rRNA rRNA 7 121 0 4957 227 70 129 chr13 56545701 56548392 -45324777 + L1PA16 LINE L1 12 2544 -4305 6327 97 5 16 chr13 56548392 56550103 -45323066 - L1PA10 LINE L1 0 6168 4480 3602 164 6 3 chr13 56550113 56550784 -45322385 - L1PA10 LINE L1 -2580 3566 2894 3141 270 43 11 chr13 56550783 56551905 -45321264 + L1PA16 LINE L1 2508 3665 -3184 * 5178 185 32 6 chr13 56552007 56553866 -45319303 + L1PA16 LINE L1 4966 6869 0 192 305 74 79 chr13 56553867 56554070 -45319099 - L2 LINE L2 -660 2654 2453 2104 140 0 12 chr13 56554543 56554885 -45318284 + MER44D DNA MER2_type 1 608 -1 1444 108 22 0 chr13 56555016 56555239 -45317930 + L1PA10 LINE L1 5941 6168 0 215 331 110 31 chr13 56555859 56555986 -45317183 + MIR SINE MIR 16 152 -110 726 263 99 67 chr13 56556014 56556256 -45316913 - MLT1J2 LTR MaLR -10 440 207 2466 235 9 20 chr13 56556256 56556813 -45316356 - MLT2B3 LTR ERVL -3 551 1 726 263 99 67 chr13 56556813 56556955 -45316214 - MLT1J2 LTR MaLR -243 207 36 416 210 31 164 chr13 56556955 56557150 -45316019 + MER96 DNA MER1_type 5 173 -2 726 263 99 67 chr13 56557150 56557188 -45315981 - MLT1J2 LTR MaLR -414 36 1 24 32 0 0 chr13 56557388 56557419 -45315750 + AT_rich Low_complexity Low_complexity 1 31 0 357 309 65 88 chr13 56558108 56558205 -45314964 - L2 LINE L2 0 3272 3174 2112 89 0 0 chr13 56558205 56558474 -45314695 + AluSg SINE Alu 1 269 -41 227 31 31 0 chr13 56558474 56558506 -45314663 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 357 309 65 88 chr13 56558506 56558714 -45314455 - L2 LINE L2 -96 3176 2973 265 276 35 26 chr13 56559022 56559138 -45314031 - L1MC5 LINE L1 -183 7778 7662 242 296 14 14 chr13 56559243 56559314 -45313855 + GA-rich Low_complexity Low_complexity 4 74 0 381 360 107 29 chr13 56559512 56559784 -45313385 + L3 LINE CR1 207 499 -1078 664 251 58 47 chr13 56560306 56560497 -45312672 - MIR SINE MIR -64 198 6 248 279 33 0 chr13 56560510 56560571 -45312598 + MIR SINE MIR 200 262 0 246 237 194 11 chr13 56560570 56560663 -45312506 - MIR SINE MIR -64 198 89 * 805 246 12 0 chr13 56561669 56561836 -45311333 - FAM SINE Alu -5 170 2 3310 213 65 23 chr13 56561840 56561874 -45311295 - L1MB3 LINE L1 -355 5828 5797 261 0 0 0 chr13 56561874 56561903 -45311266 + (TG)n Simple_repeat Simple_repeat 2 30 0 3310 213 65 23 chr13 56561903 56563387 -45309782 - L1MB3 LINE L1 -386 5797 4256 974 204 173 7 chr13 56563597 56563886 -45309283 + L1MC4 LINE L1 6703 7039 -1003 699 240 42 64 chr13 56563910 56564193 -45308976 + L1MC4 LINE L1 7506 7782 -260 411 228 49 0 chr13 56564225 56564348 -45308821 + L1MC4 LINE L1 7914 8042 0 299 47 0 81 chr13 56564360 56564446 -45308723 + (TAAA)n Simple_repeat Simple_repeat 2 80 0 2281 191 25 81 chr13 56564646 56565276 -45307893 - L1MB3 LINE L1 -1875 4271 3677 1827 174 0 13 chr13 56566191 56566496 -45306673 + AluJo SINE Alu 1 301 -11 340 336 72 57 chr13 56567293 56567795 -45305374 - L2 LINE L2 -5 3267 2713 2459 162 31 7 chr13 56568428 56568841 -45304328 - MSTB LTR MaLR 0 426 4 239 155 42 14 chr13 56568926 56568997 -45304172 + CT-rich Low_complexity Low_complexity 1 73 0 2201 110 3 0 chr13 56568997 56569296 -45303873 - AluSp SINE Alu -13 300 1 213 39 0 0 chr13 56569345 56569371 -45303798 + (TAA)n Simple_repeat Simple_repeat 3 28 0 196 323 104 10 chr13 56569746 56569842 -45303327 + MIR SINE MIR 34 138 -70 328 156 16 16 chr13 56569884 56569948 -45303221 + LTR37B LTR ERV1 23 86 -382 194 173 0 39 chr13 56570580 56570632 -45302537 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 302 225 72 45 chr13 56572342 56572453 -45300716 + L1MEc LINE L1 284 397 -5999 843 264 103 51 chr13 56572517 56572718 -45300451 + L1MEc LINE L1 615 804 -5411 3641 151 15 42 chr13 56572718 56573473 -45299696 + L1MA8 LINE L1 5552 6285 -6 843 264 103 51 chr13 56573473 56574143 -45299026 + L1MEc LINE L1 804 1518 -4697 279 0 0 0 chr13 56574147 56574178 -45298991 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1465 86 0 0 chr13 56574178 56574376 -45298793 - L1PA5 LINE L1 -18 6136 5939 24 53 0 0 chr13 56574426 56574464 -45298705 + AT_rich Low_complexity Low_complexity 1 38 0 828 237 127 11 chr13 56574501 56574784 -45298385 + L1MD3 LINE L1 7678 7993 -2 430 219 62 94 chr13 56574785 56574977 -45298192 + L1MEc LINE L1 1629 1814 -4582 231 36 0 0 chr13 56575053 56575081 -45298088 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 307 167 0 0 chr13 56575087 56575141 -45298028 + L1P LINE L1 4927 4980 -1166 409 202 296 30 chr13 56575197 56575400 -45297769 + L1MEc LINE L1 1907 2163 -4233 538 228 10 0 chr13 56575408 56575509 -45297660 + MSTD LTR MaLR 248 349 -47 628 241 55 56 chr13 56575509 56575944 -45297225 + L1MEc LINE L1 2153 2564 -3651 1543 214 80 18 chr13 56575958 56576407 -45296762 + L1ME1 LINE L1 5672 6148 -18 5273 161 13 34 chr13 56576624 56577599 -45295570 + L1PA16 LINE L1 4398 5346 -820 1764 110 0 20 chr13 56577599 56577854 -45295315 + AluSc SINE Alu 45 294 -15 5273 161 13 34 chr13 56577854 56578650 -45294519 + L1PA16 LINE L1 5346 6157 -9 26 0 0 0 chr13 56578909 56578935 -45294234 + AT_rich Low_complexity Low_complexity 1 26 0 208 386 59 47 chr13 56579310 56579564 -45293605 + L2 LINE L2 3016 3272 0 296 410 34 10 chr13 56579977 56580387 -45292782 + L1MEc LINE L1 465 884 -5941 936 265 65 34 chr13 56580788 56581472 -45291697 + L1MEc LINE L1 1032 1649 -4893 1999 141 0 0 chr13 56581489 56581765 -45291404 - AluSg1 SINE Alu -31 278 3 476 149 11 0 chr13 56581766 56581860 -45291309 - L1PA16 LINE L1 -128 6038 5944 1553 277 38 40 chr13 56581881 56582611 -45290558 + L1ME2 LINE L1 5435 6163 -1 905 98 15 0 chr13 56583425 56583557 -45289612 - L1PA16 LINE L1 0 6166 6033 234 91 0 0 chr13 56583617 56583650 -45289519 + (A)n Simple_repeat Simple_repeat 1 33 0 1579 203 84 97 chr13 56584165 56584745 -45288424 + MLT1E2 LTR MaLR 52 624 -2 2237 152 26 0 chr13 56584751 56585099 -45288070 + LTR18A LTR ERVL 1 357 0 8229 224 25 2 chr13 56585123 56586697 -45286472 + HERVL18 LTR ERVL 791 2400 -3647 18411 156 11 24 chr13 56586697 56589908 -45283261 + HERVL18 LTR ERVL 2879 6047 0 2485 130 17 6 chr13 56589909 56590262 -45282907 + LTR18A LTR ERVL 1 357 0 273 293 71 0 chr13 56590562 56590661 -45282508 + MIR SINE MIR 122 227 -35 278 259 9 86 chr13 56591285 56591401 -45281768 + MIR3 SINE MIR 88 194 -14 618 206 15 15 chr13 56593681 56593817 -45279352 + MER5B DNA MER1_type 1 136 -42 361 252 82 48 chr13 56593853 56593973 -45279196 - L2 LINE L2 -1291 2023 1896 1313 321 16 85 chr13 56593973 56594418 -45278751 - MLT2D LTR ERVL 0 414 1 361 252 82 48 chr13 56594418 56594444 -45278725 - L2 LINE L2 -1418 1896 1872 786 188 113 0 chr13 56594572 56594732 -45278437 + MER5B DNA MER1_type 1 178 0 1694 205 11 55 chr13 56594930 56595384 -45277785 + L1M3e LINE L1 466 899 -6590 486 204 21 0 chr13 56595387 56595480 -45277689 + MER5B DNA MER1_type 42 136 -42 3712 223 118 35 chr13 56595782 56596992 -45276177 + L1M3e LINE L1 2008 3116 -4449 1338 216 68 20 chr13 56596992 56597288 -45275881 + AluJo SINE Alu 1 310 -2 3712 223 118 35 chr13 56597288 56598279 -45274890 + L1M3e LINE L1 3116 4400 -3165 2078 167 11 72 chr13 56598287 56598742 -45274427 + MER54B LTR ERVL 256 682 -111 490 250 10 0 chr13 56598806 56598906 -45274263 - MER5A DNA MER1_type -80 109 9 477 261 124 8 chr13 56598941 56599297 -45273872 - L1MDa LINE L1 -1661 4879 4483 769 284 85 24 chr13 56599324 56600081 -45273088 - L1MDa LINE L1 -3265 3275 2469 389 362 65 49 chr13 56600092 56600338 -45272831 - L1MDa LINE L1 -5343 1187 938 256 206 15 15 chr13 56601397 56601465 -45271704 + LTR67 LTR ERVL 469 536 -21 22 0 0 0 chr13 56601529 56601551 -45271618 + AT_rich Low_complexity Low_complexity 1 22 0 642 227 7 14 chr13 56601798 56601977 -45271192 - FRAM SINE Alu 0 189 12 1509 110 50 0 chr13 56603821 56604040 -45269129 + MER30 DNA MER1_type 1 230 0 462 311 51 28 chr13 56604123 56604300 -45268869 - MIR SINE MIR -36 226 46 30 27 0 0 chr13 56606343 56606380 -45266789 + AT_rich Low_complexity Low_complexity 1 37 0 620 304 68 37 chr13 56606783 56607885 -45265284 + L1MEd LINE L1 463 1581 -4548 1770 167 3 7 chr13 56608041 56608328 -45264841 - AluJo SINE Alu -12 300 15 1980 147 0 13 chr13 56608336 56608677 -45264492 - AluSx SINE Alu 0 312 1 252 199 205 40 chr13 56608709 56608860 -45264309 - MIR SINE MIR -78 184 9 285 341 33 0 chr13 56610395 56610486 -45262683 - MIR SINE MIR -14 248 155 242 282 121 34 chr13 56610484 56610633 -45262536 - L2 LINE L2 -968 2346 2185 * 227 214 0 86 chr13 56611104 56611174 -45261995 - MIR SINE MIR -14 248 185 901 209 33 48 chr13 56712123 56712333 -45160836 - MER58A DNA MER1_type -11 213 7 25 51 0 0 chr13 56712373 56712412 -45160757 + AT_rich Low_complexity Low_complexity 1 39 0 447 304 106 24 chr13 56712704 56712911 -45160258 - MIR SINE MIR 0 262 39 301 320 29 6 chr13 56713096 56713268 -45159901 + L1ME4a LINE L1 5730 5905 -216 610 210 160 22 chr13 56713297 56713478 -45159691 + MER63A DNA MER1_type 3 208 -2 934 307 31 34 chr13 56713534 56713922 -45159247 - LTR16B LTR ERVL -4 460 74 1792 163 3 13 chr13 56714146 56714447 -45158722 - AluJb SINE Alu 0 312 15 849 236 14 108 chr13 56714768 56715056 -45158113 + MIR SINE MIR 2 262 0 354 330 9 0 chr13 56715193 56715308 -45157861 + MIR3 SINE MIR 81 196 -12 204 324 38 38 chr13 56715964 56716069 -45157100 - MIR SINE MIR -48 214 110 22 0 0 0 chr13 56716102 56716124 -45157045 + AT_rich Low_complexity Low_complexity 1 22 0 258 193 0 0 chr13 56716286 56716343 -45156826 + (CA)n Simple_repeat Simple_repeat 2 58 0 284 330 10 0 chr13 56716416 56716513 -45156656 + LTR16C LTR ERVL 301 398 -93 319 277 38 20 chr13 56716612 56716749 -45156420 - MIR SINE MIR -72 136 53 200 317 82 16 chr13 56718155 56718338 -45154831 - MIR SINE MIR 0 262 68 1645 262 73 65 chr13 56718358 56718945 -45154224 + MER90 LTR ERV1 23 614 0 279 281 0 0 chr13 56718946 56719010 -45154159 - MIR SINE MIR -152 110 47 21 0 0 0 chr13 56719468 56719489 -45153680 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 56719626 56719648 -45153521 + AT_rich Low_complexity Low_complexity 1 22 0 1293 185 126 0 chr13 56719652 56719772 -45153397 + AluJo SINE Alu 1 105 -207 267 31 0 0 chr13 56719772 56719804 -45153365 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 1293 185 126 0 chr13 56719804 56719937 -45153232 + AluJo SINE Alu 105 286 -26 408 82 0 0 chr13 56719937 56719998 -45153171 + (TA)n Simple_repeat Simple_repeat 1 61 0 225 0 0 0 chr13 56719997 56720022 -45153147 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 39 68 0 0 chr13 56720121 56720195 -45152974 + AT_rich Low_complexity Low_complexity 1 74 0 1004 237 59 50 chr13 56720379 56720737 -45152432 - L1ME1 LINE L1 -72 6094 5734 1391 244 52 30 chr13 56720983 56721422 -45151747 - L1ME1 LINE L1 -106 5994 5546 986 180 6 0 chr13 56721416 56721588 -45151581 - L1MB2 LINE L1 -332 6075 5903 * 647 221 75 98 chr13 56721622 56721834 -45151335 - L1MB2 LINE L1 -2870 3512 3309 1166 221 39 88 chr13 56721834 56722218 -45150951 + MLT1A1 LTR MaLR 1 365 0 647 221 75 98 chr13 56722218 56722340 -45150829 - L1MB2 LINE L1 -3073 3309 3186 * 843 238 25 73 chr13 56722334 56722649 -45150520 - L1MB2 LINE L1 -3593 2789 2490 * 1961 224 22 14 chr13 56722641 56723056 -45150113 - L1MB2 LINE L1 -5943 441 24 1339 210 148 7 chr13 56723199 56723633 -45149536 + LTR54B LTR ERV1 2 496 -2 34 0 0 0 chr13 56723717 56723751 -45149418 + AT_rich Low_complexity Low_complexity 1 34 0 249 33 0 0 chr13 56723968 56723998 -45149171 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 23 0 0 0 chr13 56725170 56725193 -45147976 + AT_rich Low_complexity Low_complexity 1 23 0 219 231 135 0 chr13 56725292 56725344 -45147825 - L2 LINE L2 -7 3306 3248 1099 185 92 0 chr13 56725900 56726127 -45147042 - L1ME1 LINE L1 -562 5538 5291 * 1252 208 64 3 chr13 56726125 56726485 -45146684 + L1M4 LINE L1 4310 4691 -1455 267 200 0 71 chr13 56726487 56726557 -45146612 + L1M1 LINE L1 5723 5787 -518 392 209 22 0 chr13 56726568 56726659 -45146510 + L1M4 LINE L1 4706 4798 -1348 231 218 58 35 chr13 56726653 56726740 -45146429 - L1ME1 LINE L1 -875 5205 5117 * 919 291 123 28 chr13 56726776 56727460 -45145709 - L1ME1 LINE L1 -2028 4052 3304 1467 215 44 22 chr13 56727462 56727872 -45145297 - L1MA10 LINE L1 -29 6305 5887 264 264 48 8 chr13 56727867 56727992 -45145177 - L1ME1 LINE L1 -5409 671 542 * 216 119 48 0 chr13 56728003 56728045 -45145124 + (TTG)n Simple_repeat Simple_repeat 2 45 0 243 297 0 16 chr13 56728134 56728198 -45144971 - L1ME1 LINE L1 -5625 445 383 180 0 0 0 chr13 56728315 56728335 -45144834 + (TC)n Simple_repeat Simple_repeat 2 21 0 2280 84 0 6 chr13 56728399 56728710 -45144459 - AluY SINE Alu -2 309 1 189 321 24 24 chr13 56728729 56728813 -45144356 + L2 LINE L2 2968 3051 -221 435 100 100 0 chr13 56729119 56729269 -45143900 + (TA)n Simple_repeat Simple_repeat 2 166 0 2081 122 0 0 chr13 56729269 56729555 -45143614 - AluSq SINE Alu -27 286 1 1541 161 4 15 chr13 56729840 56730101 -45143068 + AluSx SINE Alu 26 283 -29 264 40 60 0 chr13 56730104 56730154 -45143015 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 529 315 89 24 chr13 56731229 56731482 -45141687 - L1MEc LINE L1 -4543 1853 1618 183 42 0 0 chr13 56731482 56731506 -45141663 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 529 315 89 24 chr13 56731506 56731760 -45141409 - L1MEc LINE L1 -4778 1618 1293 2027 131 30 35 chr13 56731760 56732126 -45141043 + THE1B LTR MaLR 1 364 0 529 315 89 24 chr13 56732126 56732255 -45140914 - L1MEc LINE L1 -5103 1293 1174 322 297 12 61 chr13 56732329 56732494 -45140675 - MLT1G1 LTR MaLR -28 514 358 373 254 42 17 chr13 56732584 56732702 -45140467 - MLT1G1 LTR MaLR -317 278 158 27 29 0 0 chr13 56732794 56732828 -45140341 + AT_rich Low_complexity Low_complexity 1 34 0 235 346 29 39 chr13 56733284 56733388 -45139781 - L2 LINE L2 -209 3063 2961 932 294 32 32 chr13 56733674 56733921 -45139248 + L1M2 LINE L1 10 259 -6590 3606 119 11 2 chr13 56733921 56734468 -45138701 + MER41A LTR ERV1 3 554 0 932 294 32 32 chr13 56734468 56734632 -45138537 + L1M2 LINE L1 258 421 -6428 641 124 9 0 chr13 56735020 56735125 -45138044 + MER41B LTR ERV1 413 518 -117 320 316 119 73 chr13 56735167 56735673 -45137496 + L1M2 LINE L1 543 1071 -5778 248 294 74 78 chr13 56735674 56735905 -45137264 + L1PBb LINE L1 796 1025 -5824 321 279 79 48 chr13 56736102 56736267 -45136902 + L1PBb LINE L1 999 1168 -5681 4778 191 67 8 chr13 56736274 56737401 -45135768 + L1PBb LINE L1 1267 2460 -4388 22 56 0 0 chr13 56737726 56737762 -45135407 + AT_rich Low_complexity Low_complexity 1 36 0 2701 203 86 104 chr13 56737762 56738878 -45134291 - MER52A LTR ERV1 0 1755 660 209 128 26 0 chr13 56738896 56738935 -45134234 + (TA)n Simple_repeat Simple_repeat 1 40 0 1171 167 52 35 chr13 56738959 56739246 -45133923 - L1MA7 LINE L1 -27 6264 5973 436 81 16 0 chr13 56739556 56739618 -45133551 - Alu SINE Alu -255 63 1 183 369 63 0 chr13 56739625 56739736 -45133433 - MIR SINE MIR -116 146 29 2201 128 0 10 chr13 56739786 56740099 -45133070 + AluSx SINE Alu 1 310 -2 2238 116 0 0 chr13 56740552 56740855 -45132314 + AluSq SINE Alu 1 303 -10 1838 170 0 13 chr13 56741179 56741491 -45131678 + AluJb SINE Alu 3 310 -2 643 200 0 0 chr13 56741591 56741701 -45131468 + AluSq/x SINE Alu 1 110 -202 1350 218 30 6 chr13 56741801 56742131 -45131038 + Cheshire DNA MER1_type 1322 1659 -761 25 65 0 0 chr13 56742233 56742279 -45130890 + AT_rich Low_complexity Low_complexity 1 46 0 390 178 0 93 chr13 56742412 56742519 -45130650 - Charlie1 DNA MER1_type -447 2314 2218 1691 139 58 0 chr13 56742550 56742824 -45130345 + AluSg SINE Alu 1 290 -20 236 29 0 29 chr13 56742837 56742871 -45130298 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 237 240 10 31 chr13 56742876 56742972 -45130197 + L1M4 LINE L1 5816 5909 -269 2308 77 0 0 chr13 56742972 56743259 -45129910 + AluSx SINE Alu 1 287 -25 2083 83 0 11 chr13 56743269 56743546 -45129623 + AluY SINE Alu 1 274 -37 215 137 0 20 chr13 56743549 56743600 -45129569 + (CA)n Simple_repeat Simple_repeat 2 51 0 1038 173 26 18 chr13 56743992 56744218 -45128951 + L1PA16 LINE L1 5792 6019 -147 1252 187 60 48 chr13 56744287 56744555 -45128614 + AluSx SINE Alu 1 271 -41 5684 160 8 15 chr13 56744761 56745806 -45127363 - HSMAR2 DNA Mariner 0 1302 266 1939 156 69 17 chr13 56745807 56746153 -45127016 + THE1B LTR MaLR 1 364 0 4882 106 17 0 chr13 56746153 56746878 -45126291 + THE1B-int LTR MaLR 1 737 -843 3338 140 11 19 chr13 56746878 56747442 -45125727 - LTR6A LTR ERV1 0 564 6 5893 112 1 0 chr13 56747476 56748322 -45124847 + THE1B-int LTR MaLR 734 1580 0 1899 158 79 15 chr13 56748322 56748664 -45124505 + THE1B LTR MaLR 1 364 0 1243 155 12 16 chr13 56748664 56748916 -45124253 - HSMAR2 DNA Mariner -1033 269 19 183 342 64 43 chr13 56749286 56749473 -45123696 - L2 LINE L2 -1305 2009 1819 566 150 10 0 chr13 56749634 56749734 -45123435 + MSTA LTR MaLR 3 103 -325 5437 146 113 53 chr13 56749838 56750496 -45122673 + MSTA-int LTR MaLR 351 1111 -469 2070 160 30 25 chr13 56750496 56750858 -45122311 - THE1B LTR MaLR 0 364 1 5437 146 113 53 chr13 56750858 56751358 -45121811 + MSTA-int LTR MaLR 1111 1579 -1 1578 168 190 11 chr13 56751359 56751722 -45121447 + MSTA LTR MaLR 1 428 0 27 49 0 0 chr13 56752778 56752819 -45120350 + AT_rich Low_complexity Low_complexity 1 41 0 462 302 215 0 chr13 56753751 56753956 -45119213 + MIR SINE MIR 9 257 -5 249 33 0 0 chr13 56754661 56754691 -45118478 + (A)n Simple_repeat Simple_repeat 1 30 0 390 337 27 16 chr13 56755396 56755580 -45117589 + MIR SINE MIR 56 241 -21 1769 95 82 44 chr13 56755700 56755994 -45117175 + AluY SINE Alu 1 305 -6 712 189 0 0 chr13 56756025 56756147 -45117022 + FRAM SINE Alu 40 161 -15 21 71 0 0 chr13 56756740 56756782 -45116387 + AT_rich Low_complexity Low_complexity 1 42 0 820 257 64 49 chr13 56757964 56758298 -45114871 - MLT1D LTR MaLR 0 593 128 316 292 38 11 chr13 56758610 56758795 -45114374 + L1MEc LINE L1 1377 1566 -4830 610 305 105 15 chr13 56759057 56760245 -45112924 + L1MEc LINE L1 1567 2836 -3379 21 0 0 0 chr13 56760266 56760287 -45112882 + AT_rich Low_complexity Low_complexity 1 21 0 477 271 83 4 chr13 56760328 56760605 -45112564 + L1M4 LINE L1 2246 2544 -3602 1151 47 0 14 chr13 56760605 56760753 -45112416 - AluY SINE Alu -7 304 159 454 294 111 27 chr13 56760758 56761533 -45111636 + L1M4 LINE L1 2538 3377 -2769 1975 224 86 41 chr13 56762407 56763582 -45109587 - Zaphod DNA AcHobo -113 3918 2661 39 74 0 0 chr13 56764038 56764119 -45109050 + AT_rich Low_complexity Low_complexity 1 81 0 402 321 111 11 chr13 56764242 56764513 -45108656 - L1ME LINE L1 -442 5679 5382 3846 208 29 18 chr13 56764625 56765231 -45107938 + L1PA15-16 LINE L1 1954 2576 -4273 2203 125 0 0 chr13 56765231 56765528 -45107641 - AluSx SINE Alu -15 297 1 3846 208 29 18 chr13 56765528 56765981 -45107188 + L1PA15-16 LINE L1 2576 3023 -3826 213 234 45 147 chr13 56766466 56766558 -45106611 - L2 LINE L2 -158 3114 3014 1579 183 43 0 chr13 56766558 56766815 -45106354 - AluJb SINE Alu -44 268 1 213 234 45 147 chr13 56766815 56767055 -45106114 - L2 LINE L2 -258 3014 2816 304 257 200 40 chr13 56767284 56767584 -45105585 + L2 LINE L2 2627 2974 -340 1905 148 3 0 chr13 56768853 56769144 -45104025 + AluSx SINE Alu 1 292 -20 286 299 0 0 chr13 56769176 56769273 -45103896 + L1PA15-16 LINE L1 2282 2378 -4471 399 21 0 0 chr13 56769473 56769521 -45103648 + (TC)n Simple_repeat Simple_repeat 1 48 0 306 302 31 64 chr13 56769972 56770182 -45102987 - MIR3 SINE MIR -57 205 6 328 56 56 0 chr13 56770326 56770380 -45102789 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 389 304 112 5 chr13 56770425 56770626 -45102543 - MIR SINE MIR -7 255 35 195 286 39 0 chr13 56770666 56770743 -45102426 - MIR SINE MIR -19 243 164 961 68 0 0 chr13 56770812 56770930 -45102239 - AluSp/q SINE Alu -19 294 177 26 50 0 0 chr13 56770937 56770977 -45102192 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr13 56771113 56771138 -45102031 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 777 255 19 9 chr13 56771579 56771791 -45101378 + MLT1E3 LTR MaLR 411 624 0 197 169 17 0 chr13 56772547 56772606 -45100563 + (TA)n Simple_repeat Simple_repeat 2 61 0 27 29 0 0 chr13 56773060 56773094 -45100075 + AT_rich Low_complexity Low_complexity 1 34 0 269 246 16 0 chr13 56773752 56773813 -45099356 - MER77 LTR ERV1 -543 62 1 435 313 133 25 chr13 56773956 56774272 -45098897 + MLT1J LTR MaLR 1 350 -161 462 342 71 26 chr13 56775387 56775738 -45097431 + L2 LINE L2 2031 2397 -917 224 75 0 25 chr13 56775901 56775941 -45097228 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 332 43 22 0 chr13 56776146 56776192 -45096977 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 1040 143 32 0 chr13 56776192 56776346 -45096823 + AluJb SINE Alu 133 291 -21 1894 114 41 28 chr13 56776355 56776645 -45096524 + AluSg SINE Alu 1 294 -16 1036 92 0 0 chr13 56777105 56777235 -45095934 + AluSq/x SINE Alu 4 133 -179 2277 99 3 0 chr13 56777237 56777539 -45095630 + AluSx SINE Alu 1 303 -9 31 50 0 0 chr13 56777542 56777582 -45095587 + AT_rich Low_complexity Low_complexity 1 40 0 1724 192 0 3 chr13 56777590 56777892 -45095277 + AluJb SINE Alu 7 307 -5 2118 118 0 0 chr13 56777987 56778380 -45094789 + AluSg SINE Alu 1 393 0 279 288 12 0 chr13 56778462 56778542 -45094627 + MLT1A2 LTR MaLR 196 276 -98 330 209 15 0 chr13 56778585 56778652 -45094517 + MLT1A2 LTR MaLR 209 276 -98 265 254 15 0 chr13 56778695 56778762 -45094407 + MLT1A2 LTR MaLR 209 276 -98 350 281 10 0 chr13 56778792 56778888 -45094281 + MLT1A2 LTR MaLR 196 292 -82 889 299 151 46 chr13 56779519 56779584 -45093585 - L2 LINE L2 -261 3052 2995 2041 88 25 4 chr13 56779584 56779881 -45093288 + AluSg SINE Alu 1 303 0 889 299 151 46 chr13 56779881 56780708 -45092461 - L2 LINE L2 -318 2995 2051 232 338 161 17 chr13 56780802 56781101 -45092068 - L2 LINE L2 -1792 1522 1181 1108 204 46 9 chr13 56781329 56781657 -45091512 - L1 LINE L1 -2389 3757 3418 1725 194 0 3 chr13 56782293 56782592 -45090577 + AluJb SINE Alu 1 298 -14 788 252 103 14 chr13 56783054 56783336 -45089833 - L2 LINE L2 -163 3150 2844 270 0 0 0 chr13 56785144 56785174 -45087995 + (CA)n Simple_repeat Simple_repeat 1 30 0 296 331 44 29 chr13 56788396 56788532 -45084637 - L1MD2 LINE L1 -260 6099 5962 * 1128 289 51 18 chr13 56788526 56789035 -45084134 + L1M4 LINE L1 3943 4468 -1678 319 185 0 0 chr13 56789036 56789090 -45084079 + AluS SINE Alu 228 281 -20 748 241 5 0 chr13 56789109 56789304 -45083865 + L1M4 LINE L1 4463 4658 -1488 2420 38 0 44 chr13 56789797 56790116 -45083053 - AluY SINE Alu -6 305 1 441 159 40 25 chr13 56790958 56791238 -45081931 + (TCTA)n Simple_repeat Simple_repeat 1 284 0 508 142 50 12 chr13 56791249 56791656 -45081513 + (TCTA)n Simple_repeat Simple_repeat 1 422 0 235 154 31 0 chr13 56791685 56791750 -45081419 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 442 170 49 8 chr13 56791773 56792235 -45080934 + (TCTA)n Simple_repeat Simple_repeat 1 480 0 219 192 69 46 chr13 56792279 56792409 -45080760 + (TCTA)n Simple_repeat Simple_repeat 1 133 0 202 220 17 0 chr13 56792449 56792476 -45080693 + (TCTA)n Simple_repeat Simple_repeat 2 27 -34 2042 101 7 46 chr13 56792476 56792783 -45080386 - AluSx SINE Alu -15 297 3 202 220 17 0 chr13 56792783 56792814 -45080355 + (TCTA)n Simple_repeat Simple_repeat 27 61 0 189 98 39 20 chr13 56793073 56793124 -45080045 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 844 287 68 31 chr13 56793167 56793519 -45079650 - MLT1J LTR MaLR -45 466 102 1805 171 0 3 chr13 56794284 56794582 -45078587 + AluJb SINE Alu 1 297 -15 241 98 82 16 chr13 56794585 56794646 -45078523 + (CAAA)n Simple_repeat Simple_repeat 2 66 0 597 330 158 32 chr13 56794864 56795422 -45077747 + L2 LINE L2 2080 2707 -607 23 0 0 0 chr13 56795707 56795730 -45077439 + AT_rich Low_complexity Low_complexity 1 23 0 3628 187 32 50 chr13 56796332 56797219 -45075950 - L1MA9 LINE L1 -37 6275 5405 462 248 244 28 chr13 56797435 56797731 -45075438 + MLT1G1 LTR MaLR 209 594 -1 1221 269 13 38 chr13 56799122 56799494 -45073675 - MLT1A2 LTR MaLR -11 363 1 190 325 50 12 chr13 56802300 56802380 -45070789 + L2 LINE L2 3014 3096 -176 28 71 0 0 chr13 56802498 56802554 -45070615 + AT_rich Low_complexity Low_complexity 1 56 0 1941 150 3 3 chr13 56803318 56803625 -45069544 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr13 56805859 56805884 -45067285 + AT_rich Low_complexity Low_complexity 1 25 0 294 296 233 0 chr13 56806054 56806213 -45066956 + MIR SINE MIR 59 254 -8 13610 40 2 7 chr13 56806396 56808844 -45064325 + L1PA5 LINE L1 3702 6152 -2 17010 102 2 23 chr13 56809026 56811589 -45061580 - L1P LINE L1 -3183 2963 454 191 172 0 17 chr13 56811705 56811763 -45061406 + (TA)n Simple_repeat Simple_repeat 2 58 0 204 97 0 0 chr13 56811763 56811794 -45061375 + (CAGAGA)n Simple_repeat Simple_repeat 4 34 0 21 0 0 0 chr13 56812383 56812404 -45060765 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 56814503 56814541 -45058628 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr13 56814884 56814922 -45058247 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 56814975 56814996 -45058173 + AT_rich Low_complexity Low_complexity 1 21 0 202 345 0 24 chr13 56815429 56815513 -45057656 - MIR SINE MIR -80 128 47 321 26 0 0 chr13 56815653 56815691 -45057478 + (TG)n Simple_repeat Simple_repeat 1 38 0 1545 165 56 3 chr13 56815982 56816267 -45056902 - AluSx SINE Alu -12 300 1 442 153 0 0 chr13 56816269 56816341 -45056828 - L1MC3 LINE L1 -332 7453 7382 274 75 50 0 chr13 56816341 56816381 -45056788 + MLT1A2 LTR MaLR 281 322 -52 1242 183 0 5 chr13 56816388 56816601 -45056568 - AluJb SINE Alu -14 298 87 21 36 0 0 chr13 56817563 56817591 -45055578 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 56818905 56818931 -45054238 + AT_rich Low_complexity Low_complexity 1 26 0 286 325 32 0 chr13 56819667 56819793 -45053376 - Charlie8 DNA MER1_type -2239 178 49 217 355 36 9 chr13 56820302 56820412 -45052757 + L3 LINE CR1 1363 1475 -102 38 68 0 0 chr13 56820736 56820809 -45052360 + AT_rich Low_complexity Low_complexity 1 73 0 1642 223 87 75 chr13 56821634 56822060 -45051109 - L1MD3 LINE L1 -169 7826 7407 335 267 13 0 chr13 56822060 56822135 -45051034 - MLT1F1 LTR MaLR -456 111 36 1642 223 87 75 chr13 56822135 56822522 -45050647 - L1MD3 LINE L1 -588 7407 6700 546 326 122 24 chr13 56823195 56823729 -45049440 + L1MC4 LINE L1 5254 5839 -1969 386 310 0 28 chr13 56823883 56824025 -45049144 + MIR SINE MIR 36 173 -89 205 171 14 57 chr13 56824084 56824154 -45049015 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 2358 49 3 13 chr13 56825381 56825685 -45047484 + AluY SINE Alu 1 301 -10 235 293 0 38 chr13 56826226 56826332 -45046837 + L1MC4 LINE L1 6615 6716 -1326 21 0 0 0 chr13 56828717 56828738 -45044431 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr13 56830135 56830166 -45043003 + (CA)n Simple_repeat Simple_repeat 1 31 0 490 337 71 5 chr13 56830442 56830638 -45042531 + MIR SINE MIR 22 230 -32 189 0 0 0 chr13 56830691 56830712 -45042457 + (T)n Simple_repeat Simple_repeat 1 21 0 245 295 36 36 chr13 56831214 56831326 -45041843 + MER97b DNA MER1_type? 1 112 -941 1940 173 113 9 chr13 56831329 56831761 -45041408 + LTR45B LTR ERV1 18 525 0 204 97 0 0 chr13 56833045 56833076 -45040093 + (GA)n Simple_repeat Simple_repeat 1 31 0 192 254 61 70 chr13 56833382 56833496 -45039673 + MIR SINE MIR 90 202 -60 381 131 0 0 chr13 56834651 56834712 -45038457 + (TTCTCC)n Simple_repeat Simple_repeat 3 63 0 595 238 7 14 chr13 56834715 56834858 -45038311 - MLT1A1 LTR MaLR -213 152 11 2392 65 0 7 chr13 56834923 56835230 -45037939 + AluY SINE Alu 1 305 -6 2213 107 3 3 chr13 56835819 56836128 -45037041 + AluSc SINE Alu 1 309 0 477 229 149 64 chr13 56837073 56837510 -45035659 + L1MC5 LINE L1 7453 7926 -35 21 0 0 0 chr13 56838562 56838583 -45034586 + AT_rich Low_complexity Low_complexity 1 21 0 186 143 0 0 chr13 56838599 56838634 -45034535 + (TA)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chr13 56839010 56839035 -45034134 + AT_rich Low_complexity Low_complexity 1 25 0 359 294 100 69 chr13 56839542 56839902 -45033267 + HAL1 LINE L1 1327 1697 -810 867 310 17 13 chr13 56841843 56842082 -45031087 + MIR SINE MIR 2 241 -21 23 68 0 0 chr13 56842090 56842134 -45031035 + AT_rich Low_complexity Low_complexity 1 44 0 1617 183 44 27 chr13 56842511 56842877 -45030292 - THE1C LTR MaLR -3 372 1 22 56 0 0 chr13 56843464 56843500 -45029669 + AT_rich Low_complexity Low_complexity 1 36 0 1904 144 6 47 chr13 56843571 56843891 -45029278 + AluSx SINE Alu 1 307 -5 228 359 120 12 chr13 56844115 56844282 -45028887 + MIR3 SINE MIR 9 193 -15 483 297 105 29 chr13 56844429 56844668 -45028501 - MIR SINE MIR -5 257 1 1205 247 67 11 chr13 56844913 56845286 -45027883 - Charlie1 DNA MER1_type -925 1836 1443 4618 259 92 31 chr13 56845286 56845951 -45027218 - L1MDa LINE L1 -4376 2164 1541 1873 144 4 0 chr13 56845951 56846228 -45026941 - AluSx SINE Alu -34 278 1 4618 259 92 31 chr13 56846228 56846425 -45026744 - L1MDa LINE L1 -4999 1541 1357 2132 125 3 0 chr13 56846425 56846722 -45026447 - AluSx SINE Alu -14 298 1 4618 259 92 31 chr13 56846722 56847896 -45025273 - L1MDa LINE L1 -5183 1357 3 1260 270 54 38 chr13 56847896 56848474 -45024695 - L1MDa LINE L1 -4638 1902 1316 1892 145 14 3 chr13 56848474 56848770 -45024399 - AluSx SINE Alu -11 301 3 254 340 0 0 chr13 56848814 56848911 -45024258 - L1MDa LINE L1 -5903 627 531 1294 224 31 9 chr13 56848991 56849442 -45023727 - L1ME1 LINE L1 -1 6165 5621 1462 101 0 0 chr13 56850293 56850481 -45022688 + AluY SINE Alu 7 194 -117 24 0 0 0 chr13 56850522 56850546 -45022623 + AT_rich Low_complexity Low_complexity 1 24 0 180 250 50 50 chr13 56851350 56851410 -45021759 - MIR SINE MIR -111 151 92 24 41 0 20 chr13 56851872 56851887 -45021282 + AT_rich Low_complexity Low_complexity 1 15 -33 2034 127 3 0 chr13 56851887 56852179 -45020990 + AluSg SINE Alu 1 293 -17 24 41 0 20 chr13 56852179 56852212 -45020957 + AT_rich Low_complexity Low_complexity 15 48 0 741 140 73 18 chr13 56852377 56852541 -45020628 + MER53 DNA DNA 1 173 -16 696 138 46 33 chr13 56853214 56853366 -45019803 - L1MA9 LINE L1 0 6312 6159 321 26 0 0 chr13 56853375 56853413 -45019756 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1599 209 0 0 chr13 56853416 56853698 -45019471 - AluJb SINE Alu -30 282 1 2313 94 0 16 chr13 56853703 56854064 -45019105 - AluSq SINE Alu 0 313 1 3325 100 4 0 chr13 56854066 56854546 -45018623 + L1P LINE L1 1983 2464 -3682 799 179 0 70 chr13 56855049 56855205 -45017964 + AluJo SINE Alu 39 183 -129 187 355 18 9 chr13 56855378 56855488 -45017681 + MIR3 SINE MIR 91 201 -7 254 230 0 40 chr13 56857577 56857651 -45015518 - L1MC4 LINE L1 -1359 6683 6613 223 130 37 0 chr13 56857794 56857848 -45015321 + (TA)n Simple_repeat Simple_repeat 1 56 0 26 0 0 0 chr13 56858301 56858327 -45014842 + AT_rich Low_complexity Low_complexity 1 26 0 1973 152 37 6 chr13 56858487 56858836 -45014333 + THE1B LTR MaLR 3 362 -2 6792 177 62 44 chr13 56858838 56860095 -45013074 + THE1B-int LTR MaLR 1 1280 -300 1947 306 64 47 chr13 56860147 56861063 -45012106 - HERV16 LTR ERVL -4055 941 10 508 342 22 13 chr13 56861149 56861380 -45011789 - LTR16A LTR ERVL -202 248 16 421 278 48 0 chr13 56861395 56861521 -45011648 - LTR16C LTR ERVL -139 352 221 747 143 130 0 chr13 56861527 56861688 -45011481 - L1MA8 LINE L1 -7 6284 6103 21 0 0 0 chr13 56862505 56862526 -45010643 + AT_rich Low_complexity Low_complexity 1 21 0 204 146 0 24 chr13 56862891 56862932 -45010237 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 12777 92 17 10 chr13 56963638 56966238 -44906931 + L1PA7 LINE L1 3544 6144 -10 24 32 0 0 chr13 56966238 56966269 -44906900 + AT_rich Low_complexity Low_complexity 1 31 0 1996 90 0 30 chr13 56966269 56966537 -44906632 + AluY SINE Alu 38 297 -14 22 0 0 0 chr13 56967958 56967980 -44905189 + AT_rich Low_complexity Low_complexity 1 22 0 333 226 14 66 chr13 56968361 56968522 -44904647 - MLT2F LTR ERVL -1 662 252 235 128 26 0 chr13 56968537 56968576 -44904593 - MLT2F LTR ERVL -141 522 483 291 190 40 22 chr13 56968795 56968877 -44904292 - MLT1E1 LTR MaLR -437 210 100 547 272 0 7 chr13 56968878 56969014 -44904155 - MLT2F LTR ERVL -522 141 7 934 216 57 12 chr13 56969141 56969386 -44903783 - MIR SINE MIR -4 258 3 217 330 270 0 chr13 56970846 56970961 -44902208 - MIR3 SINE MIR 0 208 63 446 326 52 12 chr13 56971065 56971237 -44901932 - MLT1J LTR MaLR -99 412 234 1264 226 19 48 chr13 56971405 56971587 -44901582 + MLT1A2 LTR MaLR 1 168 -206 231 36 0 0 chr13 56971587 56971615 -44901554 + (TC)n Simple_repeat Simple_repeat 1 28 0 1264 226 19 48 chr13 56971615 56971804 -44901365 + MLT1A2 LTR MaLR 168 361 -13 294 287 55 67 chr13 56972097 56972261 -44900908 + MIR SINE MIR 87 248 -14 1050 200 5 0 chr13 56972287 56972477 -44900692 - MER58A DNA MER1_type 0 224 34 239 245 181 21 chr13 56972841 56972935 -44900234 - L2 LINE L2 -5 3308 3200 610 273 33 6 chr13 56974537 56974720 -44898449 + MIR SINE MIR 29 216 -46 2107 86 8 0 chr13 56976735 56977046 -44896123 + AluSp SINE Alu 14 326 0 3425 153 41 14 chr13 56978149 56978785 -44894384 + L1PB4 LINE L1 5491 6143 -13 2088 121 7 0 chr13 56978857 56979147 -44894022 - AluSx SINE Alu 0 312 21 199 139 13 177 chr13 56979368 56979447 -44893722 + L2 LINE L2 3184 3249 -23 1185 238 16 29 chr13 56980162 56980477 -44892692 + Charlie2 DNA MER1_type 8 318 -2464 333 81 32 16 chr13 56980518 56980580 -44892589 - L1MA4A LINE L1 -11 6292 6230 321 243 124 40 chr13 56980580 56980757 -44892412 + Charlie2 DNA MER1_type 1868 2059 -803 3833 236 49 38 chr13 56980758 56981534 -44891635 + MER45B DNA AcHobo 1 792 -789 18689 44 3 1 chr13 56981534 56984655 -44888514 + L1PA5 LINE L1 3016 6154 0 3833 236 49 38 chr13 56984655 56984907 -44888262 + MER45B DNA AcHobo 792 1040 0 233 175 48 16 chr13 56985266 56985329 -44887840 + (TA)n Simple_repeat Simple_repeat 1 65 0 1702 136 83 0 chr13 56986571 56986677 -44886492 - L1MA9 LINE L1 -38 6274 6178 309 51 0 0 chr13 56986677 56986716 -44886453 + (TG)n Simple_repeat Simple_repeat 1 39 0 1702 136 83 0 chr13 56986716 56986911 -44886258 - L1MA9 LINE L1 -134 6178 5948 2536 107 25 0 chr13 56987846 56988201 -44884968 + THE1B LTR MaLR 1 364 0 254 256 77 0 chr13 56988206 56988284 -44884885 + MIR SINE MIR 120 203 -59 3925 282 82 24 chr13 56988473 56989662 -44883507 + L2 LINE L2 1387 2708 -605 1650 196 39 21 chr13 56989662 56990045 -44883124 + MLT1B LTR MaLR 1 390 0 3925 282 82 24 chr13 56990045 56990624 -44882545 + L2 LINE L2 2708 3252 -61 197 211 123 0 chr13 56992333 56992390 -44880779 - MIR SINE MIR -2 260 197 2354 66 0 0 chr13 56994003 56994306 -44878863 - L1PA7 LINE L1 -3 6151 5849 301 49 24 0 chr13 56994306 56994347 -44878822 + L1P3 LINE L1 5764 5805 -349 258 273 0 0 chr13 56994825 56994880 -44878289 + L2 LINE L2 3259 3313 0 234 325 97 26 chr13 56995324 56995438 -44877731 + MIR SINE MIR 51 172 -90 441 275 24 69 chr13 56996733 56996895 -44876274 + L1MC/D LINE L1 5303 5452 -2356 1971 132 42 0 chr13 56996895 56997183 -44875986 - AluSx SINE Alu -12 300 1 441 275 24 69 chr13 56997183 56997267 -44875902 + L1MC/D LINE L1 5452 5538 -2270 21 0 0 0 chr13 56997518 56997539 -44875630 + AT_rich Low_complexity Low_complexity 1 21 0 2160 134 0 0 chr13 56997539 56997831 -44875338 - AluSq SINE Alu -17 296 5 26 23 0 23 chr13 56997844 56997863 -44875306 + AT_rich Low_complexity Low_complexity 1 19 -24 907 105 0 0 chr13 56997863 56997996 -44875173 + L1PB1 LINE L1 6019 6151 0 26 23 0 23 chr13 56997996 56998020 -44875149 + AT_rich Low_complexity Low_complexity 19 43 0 1011 202 54 0 chr13 56998098 56998264 -44874905 - AluJb SINE Alu -14 298 118 200 33 0 33 chr13 56998264 56998294 -44874875 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1011 202 54 0 chr13 56998294 56998330 -44874839 - AluJb SINE Alu -194 118 85 21 36 0 0 chr13 56998608 56998636 -44874533 + AT_rich Low_complexity Low_complexity 1 28 0 874 180 16 16 chr13 57000280 57000469 -44872700 + MER53 DNA DNA 1 189 0 400 123 14 68 chr13 57000795 57000893 -44872276 + AluS SINE Alu 227 301 0 308 309 49 19 chr13 57000965 57001127 -44872042 + MLT1J LTR MaLR 344 510 -1 189 392 8 8 chr13 57002663 57002783 -44870386 + L2 LINE L2 2497 2616 -698 225 372 8 16 chr13 57002810 57002931 -44870238 - L2 LINE L2 -564 2750 2631 * 233 300 0 33 chr13 57002927 57003017 -44870152 + L2 LINE L2 2664 2750 -564 431 282 227 0 chr13 57003757 57003920 -44869249 - MIR SINE MIR -22 240 41 1513 106 10 0 chr13 57003969 57004168 -44869001 - AluSq SINE Alu -92 221 21 23 33 0 0 chr13 57004742 57004772 -44868397 + AT_rich Low_complexity Low_complexity 1 30 0 2513 102 10 16 chr13 57004888 57005271 -44867898 - L1PB1 LINE L1 -3 6148 5768 21 57 0 0 chr13 57005461 57005496 -44867673 + AT_rich Low_complexity Low_complexity 1 35 0 545 281 281 10 chr13 57005520 57005815 -44867354 + L2 LINE L2 2934 3308 -5 242 313 56 14 chr13 57006506 57006650 -44866519 - L1 LINE L1 -2367 3779 3630 327 339 38 27 chr13 57006715 57006901 -44866268 + L2 LINE L2 2903 3090 -182 216 0 0 0 chr13 57007601 57007625 -44865544 + (T)n Simple_repeat Simple_repeat 1 24 0 865 132 7 0 chr13 57008163 57008299 -44864870 + L1MA9 LINE L1 5607 5743 -569 209 139 28 0 chr13 57008306 57008342 -44864827 + (TA)n Simple_repeat Simple_repeat 2 38 0 242 177 0 65 chr13 57008342 57008404 -44864765 - L1M2 LINE L1 -510 5802 5745 246 62 0 0 chr13 57008474 57008506 -44864663 + (TG)n Simple_repeat Simple_repeat 2 33 0 2514 161 9 74 chr13 57008506 57009071 -44864098 + L1MA9 LINE L1 5785 6312 0 240 200 100 22 chr13 57009072 57009162 -44864007 - L1ME4a LINE L1 -21 6100 6004 21 0 0 0 chr13 57009174 57009195 -44863974 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 57009629 57009657 -44863512 + AT_rich Low_complexity Low_complexity 1 28 0 306 297 145 0 chr13 57009711 57009849 -44863320 - L1ME LINE L1 -488 5633 5476 29 60 0 0 chr13 57009888 57009938 -44863231 + AT_rich Low_complexity Low_complexity 1 50 0 2110 158 28 0 chr13 57010097 57010451 -44862718 - THE1B LTR MaLR 0 364 1 416 317 34 44 chr13 57011609 57011814 -44861355 + MIR SINE MIR 25 227 -35 1107 245 150 55 chr13 57011839 57012333 -44860836 - MLT1E LTR MaLR 0 593 53 284 215 0 15 chr13 57012387 57012452 -44860717 - MLT1K LTR MaLR 0 588 525 238 404 0 0 chr13 57012769 57012878 -44860291 - MLT1K LTR MaLR -339 249 141 261 225 93 31 chr13 57013027 57013156 -44860013 - L1MC4 LINE L1 -74 7968 7832 981 180 0 0 chr13 57013345 57013506 -44859663 + AluSg/x SINE Alu 145 305 -7 7349 28 12 8 chr13 57014104 57015046 -44858123 + L1PA3 LINE L1 5207 6152 -3 25 51 0 0 chr13 57015156 57015195 -44857974 + AT_rich Low_complexity Low_complexity 1 39 0 360 203 54 0 chr13 57015733 57015807 -44857362 + MLT1J1 LTR MaLR 353 430 -16 21 36 0 0 chr13 57016394 57016422 -44856747 + AT_rich Low_complexity Low_complexity 1 28 0 275 309 93 7 chr13 57016812 57016965 -44856204 + MIR SINE MIR 17 188 -63 255 333 67 0 chr13 57017189 57017309 -44855860 + MIR SINE MIR 17 144 -64 240 333 27 0 chr13 57019055 57019130 -44854039 - MIR SINE MIR -97 111 35 376 295 11 0 chr13 57019299 57019392 -44853777 + MLT1G LTR MaLR 2 95 -460 1895 191 60 25 chr13 57019392 57019403 -44853766 + MSTB1 LTR MaLR 1 10 -422 4779 93 11 1 chr13 57019403 57020057 -44853112 + PABL_A LTR ERV1 1 660 0 1895 191 60 25 chr13 57020057 57020447 -44852722 + MSTB1 LTR MaLR 10 416 -16 442 314 73 44 chr13 57020455 57020729 -44852440 + MLT1G LTR MaLR 92 373 -182 1733 174 117 59 chr13 57020811 57021289 -44851880 + MER67D LTR ERV1 1 506 -8 2320 96 0 6 chr13 57021290 57021602 -44851567 - AluY SINE Alu -1 310 1 670 183 17 106 chr13 57021645 57021825 -44851344 + MLT1G LTR MaLR 425 588 -2 210 136 0 0 chr13 57021826 57021870 -44851299 + (TC)n Simple_repeat Simple_repeat 2 45 0 267 173 0 0 chr13 57021871 57021923 -44851246 + (TA)n Simple_repeat Simple_repeat 1 52 0 895 154 22 110 chr13 57021927 57022154 -44851015 + MER6B DNA MER2_type 1 207 -3 325 235 20 39 chr13 57022154 57022256 -44850913 - L1MC4 LINE L1 -1340 6702 6603 925 255 68 12 chr13 57025680 57026005 -44847164 - L1M4 LINE L1 -1727 4419 4077 * 4182 221 98 81 chr13 57026001 57027848 -44845321 - L1MDa LINE L1 -4375 2165 139 1905 171 3 0 chr13 57027848 57028141 -44845028 + AluSx SINE Alu 3 296 -16 4182 221 98 81 chr13 57028141 57028266 -44844903 - L1MDa LINE L1 -6401 139 18 22 80 0 0 chr13 57028297 57028347 -44844822 + AT_rich Low_complexity Low_complexity 1 50 0 932 297 55 43 chr13 57028706 57029247 -44843922 - L2 LINE L2 -131 3182 2623 258 309 57 23 chr13 57029272 57029447 -44843722 - MLT1J LTR MaLR -2 509 329 322 188 12 59 chr13 57029656 57029741 -44843428 - MLT1J LTR MaLR -447 64 1 1327 223 33 20 chr13 57029907 57030179 -44842990 + AluJo SINE Alu 1 279 -33 210 37 0 0 chr13 57030179 57030206 -44842963 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1327 223 33 20 chr13 57030206 57030238 -44842931 + AluJo SINE Alu 279 309 -3 365 263 151 65 chr13 57030346 57030578 -44842591 + MLT1H LTR MaLR 179 430 -119 270 0 0 0 chr13 57031083 57031113 -44842056 + (TA)n Simple_repeat Simple_repeat 2 31 0 27 96 0 0 chr13 57032035 57032118 -44841051 + AT_rich Low_complexity Low_complexity 1 83 0 183 167 0 0 chr13 57032169 57032211 -44840958 + (CA)n Simple_repeat Simple_repeat 1 42 0 1726 168 80 14 chr13 57032666 57033029 -44840140 + MLT1B LTR MaLR 4 390 0 21 0 0 0 chr13 57033043 57033064 -44840105 + AT_rich Low_complexity Low_complexity 1 21 0 328 204 11 43 chr13 57033713 57033806 -44839363 + L1MC4 LINE L1 6613 6702 -1340 180 0 0 0 chr13 57034462 57034482 -44838687 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr13 57034630 57034650 -44838519 + (A)n Simple_repeat Simple_repeat 1 20 0 530 312 109 0 chr13 57034787 57035008 -44838161 + MIR SINE MIR 18 262 0 495 0 0 0 chr13 57035592 57035647 -44837522 + (TG)n Simple_repeat Simple_repeat 2 56 0 222 136 0 0 chr13 57035647 57035691 -44837478 + (GA)n Simple_repeat Simple_repeat 2 45 0 183 80 0 0 chr13 57035850 57035875 -44837294 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 2089 191 19 15 chr13 57037525 57037990 -44835179 - MLT1C LTR MaLR 0 467 1 807 258 138 13 chr13 57038398 57038623 -44834546 + MIR SINE MIR 6 258 -4 489 321 29 45 chr13 57038968 57039211 -44833958 - MIR SINE MIR -16 246 8 38 61 0 0 chr13 57039237 57039303 -44833866 + AT_rich Low_complexity Low_complexity 1 66 0 343 269 187 15 chr13 57040505 57040639 -44832530 - MER5A DNA MER1_type 0 189 33 710 243 103 52 chr13 57041380 57041803 -44831366 + MLT1D LTR MaLR 1 443 -24 606 196 30 0 chr13 57041840 57041973 -44831196 - L1MA3 LINE L1 0 6305 6169 764 185 0 22 chr13 57041994 57042129 -44831040 - FLAM_C SINE Alu -1 132 1 480 371 73 27 chr13 57042397 57042996 -44830173 - L2 LINE L2 -729 2585 1959 855 308 75 5 chr13 57043106 57043518 -44829651 + HAL1 LINE L1 1620 2060 -447 454 262 143 51 chr13 57043527 57043821 -44829348 + HAL1 LINE L1 2153 2473 -34 1250 152 53 15 chr13 57043944 57044208 -44828961 + L1MA4 LINE L1 6022 6295 -5 207 394 44 22 chr13 57044369 57044478 -44828691 + MER5A DNA MER1_type 4 120 -69 746 164 189 25 chr13 57044478 57044679 -44828490 - MER46A DNA MER2_type -2 234 1 207 394 44 22 chr13 57044679 57044749 -44828420 + MER5A DNA MER1_type 120 187 -2 21 0 0 0 chr13 57045563 57045584 -44827585 + AT_rich Low_complexity Low_complexity 1 21 0 201 271 12 54 chr13 57047122 57047240 -44825929 - L2 LINE L2 -233 3039 2929 227 270 108 27 chr13 57047266 57047377 -44825792 - LTR16C LTR ERVL -10 481 362 619 195 0 0 chr13 57047404 57047517 -44825652 + L1PB4 LINE L1 6020 6132 -24 390 347 123 33 chr13 57048193 57048648 -44824521 - L2 LINE L2 -2 3311 2816 515 317 28 11 chr13 57049401 57049581 -44823588 + L3b LINE CR1 1109 1291 -292 223 370 109 34 chr13 57051787 57051906 -44821263 - MIR3 SINE MIR -37 171 44 352 179 0 0 chr13 57052082 57052149 -44821020 - MSTA LTR MaLR 0 428 362 2485 27 0 78 chr13 57052151 57052482 -44820687 + AluY SINE Alu 1 305 -6 2780 129 79 4 chr13 57052489 57052955 -44820214 - L1PA15 LINE L1 -301 5864 5364 23 33 0 0 chr13 57055113 57055143 -44818026 + AT_rich Low_complexity Low_complexity 1 30 0 2504 60 0 0 chr13 57055515 57055815 -44817354 - AluY SINE Alu -11 300 1 320 282 84 99 chr13 57056398 57056731 -44816438 - MLT1I LTR MaLR -2 407 80 191 346 13 26 chr13 57056881 57056959 -44816210 - L3b LINE CR1 -402 1181 1105 815 221 30 30 chr13 57057378 57057577 -44815592 + MER20 DNA MER1_type 21 219 0 275 396 32 14 chr13 57057789 57058006 -44815163 + MLT1I LTR MaLR 38 258 -151 2250 121 0 0 chr13 57058241 57058538 -44814631 - AluSc SINE Alu -12 297 1 22 80 0 0 chr13 57059367 57059417 -44813752 + AT_rich Low_complexity Low_complexity 1 50 0 197 310 14 0 chr13 57059455 57059526 -44813643 - MIR SINE MIR -35 227 156 22 56 0 0 chr13 57059944 57059980 -44813189 + AT_rich Low_complexity Low_complexity 1 36 0 192 40 0 0 chr13 57061310 57061335 -44811834 + (T)n Simple_repeat Simple_repeat 1 25 0 300 53 0 0 chr13 57062027 57062065 -44811104 + (CA)n Simple_repeat Simple_repeat 2 39 0 219 88 0 0 chr13 57062079 57062113 -44811056 + (TA)n Simple_repeat Simple_repeat 1 34 0 2736 83 5 3 chr13 57063458 57063842 -44809327 - L1PA13 LINE L1 -14 6149 5765 248 286 87 40 chr13 57064654 57064780 -44808389 - MIR SINE MIR -8 254 123 1883 146 3 0 chr13 57066082 57066376 -44806793 + LTR39 LTR ERV1 20 314 -469 2665 120 12 0 chr13 57066376 57066777 -44806392 - MER57B LTR ERV1 -3 431 26 323 164 0 0 chr13 57066780 57066835 -44806334 - MER57B LTR ERV1 -379 55 1 * 2668 190 32 0 chr13 57066835 57067296 -44805873 + LTR39 LTR ERV1 308 783 0 24 0 0 0 chr13 57068127 57068151 -44805018 + AT_rich Low_complexity Low_complexity 1 24 0 2431 114 39 5 chr13 57068369 57068754 -44804415 - MER48 LTR ERV1 0 398 1 258 318 100 22 chr13 57071747 57071927 -44801242 - MIR3 SINE MIR -62 146 2 196 257 55 73 chr13 57072999 57073108 -44800061 + L2 LINE L2 3166 3272 0 342 168 0 32 chr13 57074690 57074761 -44798408 + MIR SINE MIR 79 146 -62 490 290 101 0 chr13 57075182 57075320 -44797849 + MIR SINE MIR 81 232 -30 2345 100 0 0 chr13 57076448 57076747 -44796422 + AluSc SINE Alu 1 299 -10 642 247 148 0 chr13 57077042 57077204 -44795965 + MER5A DNA MER1_type 4 189 0 25 0 0 0 chr13 57077746 57077771 -44795398 + AT_rich Low_complexity Low_complexity 1 25 0 681 224 144 0 chr13 57078706 57078880 -44794289 - MIR SINE MIR -29 233 35 218 196 59 0 chr13 57078944 57078995 -44794174 - MIR SINE MIR -62 200 147 722 188 8 0 chr13 57079006 57079134 -44794035 + MSTC LTR MaLR 3 131 -297 573 264 174 6 chr13 57079134 57079312 -44793857 + MIR SINE MIR 38 245 -17 1458 186 13 13 chr13 57080077 57080383 -44792786 + L1MD3 LINE L1 7674 7979 -16 340 217 19 0 chr13 57080389 57080471 -44792698 + FLAM_A SINE Alu 4 65 -68 5658 103 22 19 chr13 57080919 57082002 -44791167 - L1PA11 LINE L1 -7 6167 5040 1424 118 52 0 chr13 57082656 57082867 -44790302 + MER30 DNA MER1_type 9 230 0 838 161 18 42 chr13 57082959 57083127 -44790042 + L1PB4 LINE L1 5988 6151 -5 550 351 27 14 chr13 57083989 57084211 -44788958 - MIR SINE MIR -12 250 26 354 231 33 137 chr13 57084386 57084598 -44788571 + MIR SINE MIR 14 203 -59 198 293 0 0 chr13 57085286 57085327 -44787842 + L2 LINE L2 3216 3256 -16 207 311 0 0 chr13 57086036 57086097 -44787072 + L2 LINE L2 2779 2839 -475 431 340 13 0 chr13 57086178 57086337 -44786832 + MIR3 SINE MIR 45 205 -3 1844 162 0 7 chr13 57087041 57087343 -44785826 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr13 57087699 57087720 -44785449 + AT_rich Low_complexity Low_complexity 1 21 0 185 301 122 57 chr13 57088690 57088813 -44784356 + L3 LINE CR1 1447 1577 0 204 40 0 0 chr13 57089939 57089964 -44783205 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1020 159 37 0 chr13 57090932 57091121 -44782048 + MER20 DNA MER1_type 24 219 0 23 33 0 0 chr13 57094654 57094684 -44778485 + AT_rich Low_complexity Low_complexity 1 30 0 252 167 0 0 chr13 57097991 57098039 -44775130 + (TA)n Simple_repeat Simple_repeat 1 48 0 4498 35 0 4 chr13 57098348 57098888 -44774281 - L1PA4 LINE L1 0 6155 5618 3432 20 0 0 chr13 57098888 57099519 -44773650 + L1PA4 LINE L1 4989 5619 -536 2197 167 129 18 chr13 57099541 57099989 -44773180 + MLT1D LTR MaLR 8 505 0 1290 113 134 28 chr13 57100752 57100999 -44772170 + MER1B DNA MER1_type 4 276 -63 351 340 99 0 chr13 57101082 57101244 -44771925 + MIR SINE MIR 79 256 -6 213 121 0 0 chr13 57101653 57101686 -44771483 + (TA)n Simple_repeat Simple_repeat 1 33 0 480 263 21 72 chr13 57103944 57104180 -44768989 + L2 LINE L2 3073 3296 -17 2282 235 60 39 chr13 57104312 57105099 -44768070 - L1MC4 LINE L1 -5 8037 7235 27 29 0 0 chr13 57105389 57105423 -44767746 + AT_rich Low_complexity Low_complexity 1 34 0 32 0 0 0 chr13 57105720 57105752 -44767417 + AT_rich Low_complexity Low_complexity 1 32 0 641 227 76 17 chr13 57105861 57106033 -44767136 + MIR SINE MIR 58 239 -23 2820 184 29 37 chr13 57106070 57106457 -44766712 - MER68 LTR ERV1 -6 556 174 2025 120 13 32 chr13 57106457 57106766 -44766403 - AluSx SINE Alu -9 303 1 2820 184 29 37 chr13 57106766 57106939 -44766230 - MER68 LTR ERV1 -388 174 1 410 222 0 0 chr13 57107349 57107421 -44765748 - AluJ/FLAM SINE Alu -240 72 1 204 213 0 0 chr13 57108294 57108341 -44764828 + MIR3 SINE MIR 151 197 -11 1128 226 55 3 chr13 57110357 57110685 -44762484 + L1 LINE L1 2625 2969 -3177 474 263 23 0 chr13 57110679 57110812 -44762357 + L1 LINE L1 4055 4190 -1956 * 634 294 107 35 chr13 57110945 57111424 -44761745 - L1ME LINE L1 -386 5759 5247 21 36 0 0 chr13 57111528 57111556 -44761613 + AT_rich Low_complexity Low_complexity 1 28 0 320 291 67 36 chr13 57111624 57111789 -44761380 - L1ME LINE L1 -1095 5034 4865 1113 216 143 49 chr13 57112078 57112504 -44760665 - MLT1C LTR MaLR 0 467 2 539 285 49 23 chr13 57112536 57112841 -44760328 - L1ME LINE L1 -2048 4081 3769 433 274 177 37 chr13 57113023 57113351 -44759818 - L1ME LINE L1 -2924 3205 2832 388 234 103 34 chr13 57113429 57113532 -44759637 - L1ME LINE L1 -3784 2345 2224 230 0 0 32 chr13 57113532 57113563 -44759606 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 388 234 103 34 chr13 57113563 57113634 -44759535 - L1ME LINE L1 -3905 2224 2159 613 209 132 0 chr13 57113990 57114119 -44759050 - FAM SINE Alu -19 166 21 686 281 52 28 chr13 57114236 57114733 -44758436 - L1MEd LINE L1 -4642 1668 1117 9397 181 25 20 chr13 57114810 57115320 -44757849 - L1MA4A LINE L1 -5 7000 6494 312 27 0 0 chr13 57115320 57115357 -44757812 + (TG)n Simple_repeat Simple_repeat 2 38 0 9397 181 25 20 chr13 57115357 57117801 -44755368 - L1MA4A LINE L1 -511 6494 4029 7616 219 31 75 chr13 57117786 57119945 -44753224 - L1MA4A LINE L1 -4775 2074 11 * 381 349 111 35 chr13 57119975 57120290 -44752879 - LTR16C LTR ERVL -1 490 152 1241 322 42 49 chr13 57120337 57121132 -44752037 - ERVL LTR ERVL -1551 4213 3425 2576 103 3 14 chr13 57121166 57121525 -44751644 - THE1B LTR MaLR 0 364 10 540 359 34 17 chr13 57121574 57121869 -44751300 - ERVL LTR ERVL -2177 3308 3009 278 356 35 17 chr13 57122170 57122344 -44750825 - ERVL LTR ERVL -3052 2712 2536 751 353 79 24 chr13 57122395 57123408 -44749761 - ERVL LTR ERVL -3409 2245 1108 800 104 0 0 chr13 57123433 57123548 -44749621 - L1PA5 LINE L1 -4 6150 6036 324 83 0 0 chr13 57123565 57123613 -44749556 - MER45B DNA AcHobo -207 833 786 16546 38 1 1 chr13 57123613 57126401 -44746768 - L1PA5 LINE L1 0 6154 3369 572 212 0 8 chr13 57126448 57126566 -44746603 - FLAM_C SINE Alu -6 137 21 293 302 66 28 chr13 57126975 57127187 -44745982 - ERVL LTR ERVL -4865 620 401 2318 91 3 3 chr13 57127330 57127628 -44745541 - AluSc SINE Alu -11 298 1 289 339 23 59 chr13 57127954 57128175 -44744994 - LTR16C LTR ERVL -94 397 185 606 327 49 6 chr13 57128407 57128734 -44744435 - L1MEd LINE L1 -5287 832 492 24 0 0 0 chr13 57129080 57129104 -44744065 + AT_rich Low_complexity Low_complexity 1 24 0 203 361 131 42 chr13 57129168 57129719 -44743450 + L2 LINE L2 2297 2896 -418 193 197 136 106 chr13 57129907 57129973 -44743196 + L2 LINE L2 3201 3268 -4 254 246 0 62 chr13 57130900 57131090 -44742079 + L2 LINE L2 3077 3313 0 217 227 40 0 chr13 57131218 57131293 -44741876 + (TA)n Simple_repeat Simple_repeat 2 79 0 5262 136 16 45 chr13 57132456 57133963 -44739206 - L1PA15 LINE L1 -6 6159 4666 361 130 0 0 chr13 57134263 57134329 -44738840 - L1P5 LINE L1 -421 5730 5665 398 329 135 4 chr13 57134821 57135073 -44738096 + L2 LINE L2 1811 2095 -1219 1762 299 91 56 chr13 57135080 57135146 -44738023 + L2 LINE L2 1876 1938 -1375 1146 231 129 71 chr13 57135146 57135636 -44737533 + MLT2B1 LTR ERVL 1 518 -2 1762 299 91 56 chr13 57135636 57136529 -44736640 + L2 LINE L2 1938 2904 -409 2373 126 13 11 chr13 57136529 57136903 -44736266 - THE1C LTR MaLR 0 375 1 1762 299 91 56 chr13 57136903 57137314 -44735855 + L2 LINE L2 2904 3299 -14 284 136 68 0 chr13 57137314 57137373 -44735796 - L1PA16 LINE L1 0 6166 6104 474 263 23 0 chr13 57137554 57137687 -44735482 + L1 LINE L1 4055 4190 -1956 634 294 107 35 chr13 57137820 57138299 -44734870 - L1ME LINE L1 -386 5759 5247 21 36 0 0 chr13 57138403 57138431 -44734738 + AT_rich Low_complexity Low_complexity 1 28 0 333 329 150 21 chr13 57138499 57138779 -44734390 - L1ME LINE L1 -1095 5034 4719 1105 222 146 48 chr13 57138953 57139372 -44733797 - MLT1C LTR MaLR 0 467 8 539 285 49 23 chr13 57139411 57139716 -44733453 - L1ME LINE L1 -2048 4081 3769 433 274 177 37 chr13 57139898 57140226 -44732943 - L1ME LINE L1 -2924 3205 2832 388 234 103 34 chr13 57140304 57140407 -44732762 - L1ME LINE L1 -3784 2345 2224 230 0 0 32 chr13 57140407 57140438 -44732731 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 388 234 103 34 chr13 57140438 57140509 -44732660 - L1ME LINE L1 -3905 2224 2159 613 209 132 0 chr13 57140865 57140994 -44732175 - FAM SINE Alu -19 166 21 686 281 52 28 chr13 57141111 57141608 -44731561 - L1MEd LINE L1 -4642 1668 1117 9397 181 25 20 chr13 57141685 57142195 -44730974 - L1MA4A LINE L1 -5 7000 6494 312 27 0 0 chr13 57142195 57142232 -44730937 + (TG)n Simple_repeat Simple_repeat 2 38 0 9397 181 25 20 chr13 57142232 57144676 -44728493 - L1MA4A LINE L1 -511 6494 4029 7616 219 31 75 chr13 57144661 57146820 -44726349 - L1MA4A LINE L1 -4775 2074 11 * 381 349 111 35 chr13 57146850 57147165 -44726004 - LTR16C LTR ERVL -1 490 152 1241 322 42 49 chr13 57147212 57148007 -44725162 - ERVL LTR ERVL -1551 4213 3425 2576 103 3 14 chr13 57148041 57148400 -44724769 - THE1B LTR MaLR 0 364 10 540 359 34 17 chr13 57148449 57148744 -44724425 - ERVL LTR ERVL -2177 3308 3009 278 356 35 17 chr13 57149045 57149219 -44723950 - ERVL LTR ERVL -3052 2712 2536 511 357 43 31 chr13 57149270 57150283 -44722886 - ERVL LTR ERVL -3409 2245 1108 800 104 0 0 chr13 57150308 57150423 -44722746 - L1PA5 LINE L1 -4 6150 6036 334 123 49 49 chr13 57150440 57150488 -44722681 - MER45B DNA AcHobo -207 833 783 21744 35 0 2 chr13 57150488 57153912 -44719257 - L1PA5 LINE L1 0 6154 2737 334 123 49 49 chr13 57153912 57153944 -44719225 - MER45B DNA AcHobo -256 784 753 2360 60 0 47 chr13 57154754 57155071 -44718098 + AluY SINE Alu 1 302 -9 2317 79 3 0 chr13 57155084 57155376 -44717793 + AluY SINE Alu 1 293 -18 372 194 0 22 chr13 57156304 57156380 -44716789 + MLT1I LTR MaLR 344 409 0 228 288 0 119 chr13 57157773 57157867 -44715302 - L2 LINE L2 -7 3306 3237 2168 95 7 3 chr13 57157867 57158162 -44715007 + AluSx SINE Alu 8 303 -9 228 288 0 119 chr13 57158162 57158227 -44714942 - L2 LINE L2 -76 3237 3166 219 36 0 0 chr13 57158630 57158658 -44714511 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 306 186 17 0 chr13 57158660 57158719 -44714450 - L2 LINE L2 -8 3305 3246 349 327 26 0 chr13 57158820 57158933 -44714236 + L2 LINE L2 3184 3299 -14 374 97 153 0 chr13 57158933 57159005 -44714164 - L1PA16 LINE L1 0 6166 6084 182 107 0 0 chr13 57159006 57159034 -44714135 + L2 LINE L2 3284 3311 -2 1980 259 38 13 chr13 57159179 57159704 -44713465 + MLT1F LTR MaLR 3 540 -2 454 285 15 15 chr13 57160040 57160177 -44712992 + MIR SINE MIR 126 262 0 211 224 0 0 chr13 57160887 57160936 -44712233 + A-rich Low_complexity Low_complexity 1 49 0 1342 91 50 0 chr13 57161442 57161641 -44711528 + L1MA1 LINE L1 6090 6298 -4 237 158 0 0 chr13 57162806 57162844 -44710325 - THE1C LTR MaLR 0 428 391 2150 120 0 3 chr13 57162847 57163146 -44710023 + AluSx SINE Alu 1 298 -14 599 86 12 0 chr13 57163169 57163250 -44709919 - THE1C LTR MaLR -26 349 268 245 98 24 0 chr13 57163672 57163713 -44709456 + (GA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr13 57164220 57164242 -44708927 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr13 57164702 57164739 -44708430 + AT_rich Low_complexity Low_complexity 1 37 0 601 257 93 33 chr13 57165399 57165613 -44707556 - MIR SINE MIR 0 262 36 217 293 276 6 chr13 57169056 57169230 -44703939 - L3 LINE CR1 -1038 539 319 501 62 0 0 chr13 57170076 57170141 -44703028 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 334 273 45 0 chr13 57170178 57170266 -44702903 - MIR SINE MIR -16 246 155 226 333 86 56 chr13 57171252 57171414 -44701755 + L2 LINE L2 2871 3037 -235 * 321 296 37 19 chr13 57171412 57171520 -44701649 + L2 LINE L2 3204 3313 0 212 239 368 0 chr13 57172406 57172523 -44700646 - L2 LINE L2 0 3313 3154 23 33 0 0 chr13 57172773 57172803 -44700366 + AT_rich Low_complexity Low_complexity 1 30 0 225 361 83 0 chr13 57173293 57173401 -44699768 - L2 LINE L2 -35 3237 3121 728 316 58 51 chr13 57177666 57178077 -44695092 - LTR33 LTR ERVL -70 451 38 273 338 105 29 chr13 57178602 57178812 -44694357 - L2 LINE L2 -181 3091 2866 378 277 99 7 chr13 57178831 57178972 -44694197 - MIR SINE MIR -10 252 99 225 371 124 36 chr13 57178988 57179627 -44693542 - L2 LINE L2 -585 2729 2035 1767 176 20 0 chr13 57180483 57180778 -44692391 + AluJo SINE Alu 12 312 0 246 32 0 0 chr13 57180856 57180887 -44692282 + (GA)n Simple_repeat Simple_repeat 2 32 0 539 297 103 10 chr13 57181006 57181201 -44691968 + MIR SINE MIR 39 251 -11 22 0 0 0 chr13 57181726 57181748 -44691421 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 57181915 57181941 -44691228 + AT_rich Low_complexity Low_complexity 1 26 0 1538 45 5 10 chr13 57183048 57183246 -44689923 + L1PA7 LINE L1 5958 6154 0 180 83 62 21 chr13 57183977 57184025 -44689144 + (TTATG)n Simple_repeat Simple_repeat 3 52 0 184 196 98 39 chr13 57184316 57184367 -44688802 + L2 LINE L2 3205 3258 -14 23 0 0 0 chr13 57184414 57184437 -44688732 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr13 57184613 57184640 -44688529 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 57184853 57184884 -44688285 + AT_rich Low_complexity Low_complexity 1 31 0 44007 43 3 1 chr13 57184927 57191069 -44682100 - L1PA4 LINE L1 -3 6152 2 21 0 0 0 chr13 57191269 57191290 -44681879 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 57191731 57191759 -44681410 + AT_rich Low_complexity Low_complexity 1 28 0 2306 60 0 47 chr13 57193064 57193381 -44679788 + AluY SINE Alu 1 302 -9 2289 78 3 0 chr13 57193394 57193687 -44679482 + AluY SINE Alu 1 294 -17 373 194 0 22 chr13 57194615 57194691 -44678478 + MLT1I LTR MaLR 344 409 0 234 288 0 119 chr13 57196084 57196178 -44676991 - L2 LINE L2 -7 3306 3237 2143 95 7 3 chr13 57196178 57196474 -44676695 + AluSx SINE Alu 8 304 -8 234 288 0 119 chr13 57196474 57196539 -44676630 - L2 LINE L2 -76 3237 3166 219 36 0 0 chr13 57196942 57196970 -44676199 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 357 136 17 0 chr13 57196972 57197031 -44676138 - L2 LINE L2 -8 3305 3246 190 319 87 0 chr13 57197180 57197249 -44675920 - L2 LINE L2 -285 2987 2913 21 0 0 0 chr13 57197610 57197631 -44675538 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr13 57198993 57199036 -44674133 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr13 57200111 57200139 -44673030 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 216 403 62 0 chr13 57201397 57201541 -44671628 + MIR SINE MIR 46 198 -64 442 298 202 5 chr13 57202783 57202981 -44670188 - MIR SINE MIR -16 246 10 21 36 0 0 chr13 57203231 57203259 -44669910 + AT_rich Low_complexity Low_complexity 1 28 0 201 283 80 80 chr13 57203833 57203971 -44669198 + MIR SINE MIR 30 167 -95 1196 161 0 52 chr13 57204133 57204344 -44668825 - AluJb SINE Alu -27 285 86 305 219 134 0 chr13 57204441 57204523 -44668646 - MIR SINE MIR -6 256 164 536 287 59 61 chr13 57204532 57204977 -44668192 + MLT1J2 LTR MaLR 3 450 0 356 286 10 0 chr13 57204982 57205080 -44668089 - MIR SINE MIR -111 151 53 27 0 0 0 chr13 57205301 57205328 -44667841 + AT_rich Low_complexity Low_complexity 1 27 0 218 310 85 31 chr13 57205399 57205528 -44667641 - MIR SINE MIR -125 137 2 270 0 0 0 chr13 57205561 57205591 -44667578 + (TG)n Simple_repeat Simple_repeat 2 31 0 460 306 206 9 chr13 57206215 57206434 -44666735 + MIR SINE MIR 1 262 0 2090 47 0 0 chr13 57206688 57206942 -44666227 - L1PA3 LINE L1 -3 6152 5899 482 17 0 0 chr13 57206942 57207001 -44666168 + L1P2 LINE L1 5715 5773 -382 1380 252 66 30 chr13 57207191 57207783 -44665386 + L1MC5 LINE L1 7314 7926 -35 23 0 0 0 chr13 57207835 57207858 -44665311 + AT_rich Low_complexity Low_complexity 1 23 0 1749 222 43 57 chr13 57208549 57209058 -44664111 - MLT1D LTR MaLR -3 502 1 209 373 0 0 chr13 57210461 57210528 -44662641 - MIR SINE MIR -156 106 40 248 331 199 0 chr13 57210639 57210790 -44662379 + L2 LINE L2 2578 2758 -556 197 326 68 32 chr13 57211210 57211400 -44661769 + L2 LINE L2 2731 2927 -387 183 245 61 0 chr13 57211644 57211693 -44661476 - MIR3 SINE MIR -22 186 135 2986 48 0 3 chr13 57213053 57213430 -44659739 + L1PA7 LINE L1 5774 6149 -5 196 348 45 81 chr13 57213608 57213918 -44659251 - L2 LINE L2 -40 3232 2934 645 342 33 8 chr13 57215230 57215473 -44657696 + MIR SINE MIR 14 262 0 26 30 0 0 chr13 57218785 57218818 -44654351 + AT_rich Low_complexity Low_complexity 1 33 0 2021 201 107 4 chr13 57221006 57221463 -44651706 + MLT1D LTR MaLR 1 504 -1 231 186 216 59 chr13 57222361 57222463 -44650706 + MIR SINE MIR 87 204 -58 257 372 6 71 chr13 57224410 57224593 -44648576 + MIR3 SINE MIR 36 206 -2 683 300 44 47 chr13 57226338 57226725 -44646444 - Charlie8 DNA MER1_type -2031 386 1 180 0 0 0 chr13 57226763 57226783 -44646386 + (TA)n Simple_repeat Simple_repeat 2 21 0 290 250 39 0 chr13 57227033 57227137 -44646032 + (TA)n Simple_repeat Simple_repeat 2 109 0 264 371 35 0 chr13 57227231 57227347 -44645822 + MIR3 SINE MIR 83 202 -6 290 296 112 0 chr13 57227966 57228064 -44645105 - MER5A DNA MER1_type -1 188 80 1535 169 31 96 chr13 57228369 57228551 -44644618 + MLT1B LTR MaLR 1 193 -197 1619 185 4 0 chr13 57228551 57228827 -44644342 + AluJb SINE Alu 5 281 -31 1535 169 31 96 chr13 57228827 57229059 -44644110 + MLT1B LTR MaLR 193 388 -2 253 322 28 78 chr13 57229453 57229633 -44643536 - MIR3 SINE MIR -2 206 36 276 253 218 6 chr13 57229915 57230089 -44643080 + MLT1H LTR MaLR 339 549 0 1362 278 150 44 chr13 57230089 57231122 -44642047 + HAL1 LINE L1 953 2095 -412 358 192 164 0 chr13 57231222 57231326 -44641843 + L2 LINE L2 3193 3313 0 427 225 96 108 chr13 57231558 57231798 -44641371 - L2 LINE L2 -2 3311 3075 327 333 22 0 chr13 57231908 57231998 -44641171 - MIR SINE MIR -169 93 2 291 306 56 0 chr13 57232023 57232131 -44641038 - MIR SINE MIR -4 258 145 396 204 55 4 chr13 57232140 57232248 -44640921 + MLT1H1 LTR MaLR 12 167 -382 * 435 238 171 42 chr13 57232236 57232429 -44640740 + MLT1H1 LTR MaLR 333 550 -5 595 258 24 101 chr13 57232745 57232889 -44640280 + MLT1F1 LTR MaLR 3 157 -433 1091 243 42 55 chr13 57232889 57233268 -44639901 + MLT1A2 LTR MaLR 1 374 0 595 258 24 101 chr13 57233268 57233542 -44639627 + MLT1F1 LTR MaLR 157 388 -202 2373 198 38 5 chr13 57233558 57234007 -44639162 + MER70B LTR ERVL 12 475 -103 240 256 256 0 chr13 57234057 57234147 -44639022 + MLT1F1 LTR MaLR 476 588 -7 307 304 54 9 chr13 57234851 57234963 -44638206 - MIR SINE MIR -60 202 86 2174 130 24 32 chr13 57239005 57239383 -44633786 + THE1C LTR MaLR 1 375 0 1068 227 119 48 chr13 57239522 57240025 -44633144 - MER39 LTR ERV1 0 707 1 2091 141 0 0 chr13 57240287 57240591 -44632578 - AluSx SINE Alu -6 306 3 439 318 71 13 chr13 57240630 57240784 -44632385 - MIR3 SINE MIR -21 187 25 1638 204 78 45 chr13 57240961 57241450 -44631719 + MLT1D LTR MaLR 1 505 0 245 357 93 7 chr13 57241736 57241876 -44631293 - MER91A DNA MER1_type -20 176 25 390 195 0 0 chr13 57241908 57241995 -44631174 + GA-rich Low_complexity Low_complexity 2 88 0 6742 70 20 2 chr13 57242072 57243409 -44629760 + L1PA6 LINE L1 4801 6153 -1 238 275 46 0 chr13 57243943 57244052 -44629117 - L1ME4a LINE L1 -17 6104 5991 * 296 277 80 71 chr13 57244049 57244249 -44628920 - L1ME3 LINE L1 0 6170 5967 622 268 14 14 chr13 57244312 57244525 -44628644 - L1ME3 LINE L1 -214 5956 5744 318 308 70 42 chr13 57244815 57244855 -44628314 - L1ME3 LINE L1 -462 5659 5622 2813 3 0 0 chr13 57244855 57245156 -44628013 - AluYa5 SINE Alu -10 301 1 318 308 70 42 chr13 57245156 57245401 -44627768 - L1ME3 LINE L1 -499 5622 5366 2534 106 20 3 chr13 57245571 57245929 -44627240 - THE1B LTR MaLR 0 364 1 598 205 8 24 chr13 57247080 57247207 -44625962 + MER94 DNA DNA 10 134 0 3718 246 36 9 chr13 57247657 57249068 -44624101 + L1MB7 LINE L1 3830 5288 -858 1049 204 40 132 chr13 57249068 57249121 -44624048 - MLT1A1 LTR MaLR 0 365 309 547 103 0 0 chr13 57249121 57249199 -44623970 - MADE1 DNA Mariner 0 80 3 1049 204 40 132 chr13 57249199 57249547 -44623622 - MLT1A1 LTR MaLR -56 309 1 192 77 0 0 chr13 57249556 57249582 -44623587 + (A)n Simple_repeat Simple_repeat 1 26 0 3571 186 69 12 chr13 57249583 57250404 -44622765 + L1MB7 LINE L1 5298 6165 -19 342 348 48 22 chr13 57250767 57250997 -44622172 - L2 LINE L2 -516 2798 2563 257 203 27 0 chr13 57251340 57251414 -44621755 + (TA)n Simple_repeat Simple_repeat 1 76 0 2228 117 0 3 chr13 57252100 57252400 -44620769 + AluSg SINE Alu 3 301 -9 396 302 85 9 chr13 57253966 57254072 -44619097 - MER45 DNA AcHobo -1465 116 3 25 51 0 0 chr13 57255423 57255462 -44617707 + AT_rich Low_complexity Low_complexity 1 39 0 341 317 88 54 chr13 57255466 57255671 -44617498 - MIR SINE MIR -3 259 48 1981 199 33 47 chr13 57255828 57256478 -44616691 + L1ME1 LINE L1 4833 5467 -699 1858 252 75 7 chr13 57256512 57257059 -44616110 + L1ME1 LINE L1 5568 6151 -15 11650 177 23 43 chr13 57257197 57257278 -44615891 + L1PA16 LINE L1 2942 3023 -3143 1504 39 0 0 chr13 57257278 57257456 -44615713 - L1PA3 LINE L1 0 6155 5978 11650 177 23 43 chr13 57257456 57259879 -44613290 + L1PA16 LINE L1 3023 5431 -735 278 161 18 18 chr13 57259879 57259935 -44613234 + MER41B LTR ERV1 480 535 -100 11650 177 23 43 chr13 57259935 57260508 -44612661 + L1PA16 LINE L1 5431 6014 -152 3517 161 24 3 chr13 57259936 57260550 -44612619 + L1MA4 LINE L1 5423 6049 -251 * 737 181 0 0 chr13 57260562 57260689 -44612480 - AluJb SINE Alu -8 304 178 3390 94 11 0 chr13 57260689 57261144 -44612025 + THE1B-int LTR MaLR 1121 1580 0 2148 134 36 22 chr13 57261144 57261502 -44611667 + THE1B LTR MaLR 1 363 -1 7135 148 20 3 chr13 57261503 57262672 -44610497 - L1PBa LINE L1 -5671 1192 3 683 209 7 14 chr13 57262676 57262815 -44610354 - AluJo SINE Alu -170 142 5 936 218 48 4 chr13 57262815 57263063 -44610106 + L1MA4 LINE L1 6036 6294 -6 1048 226 91 36 chr13 57263973 57264338 -44608831 - MER57A LTR ERV1 0 403 41 2635 214 54 6 chr13 57265706 57266336 -44606833 - MER45B DNA AcHobo -44 996 337 1607 231 16 23 chr13 57266383 57266820 -44606349 + L1ME2 LINE L1 5718 6151 -13 395 313 84 13 chr13 57266836 57267063 -44606106 - L1M4 LINE L1 -1437 4709 4467 270 296 104 58 chr13 57267203 57267828 -44605341 - L1M4 LINE L1 -1846 4300 3647 342 298 188 12 chr13 57267952 57268271 -44604898 - L1M4 LINE L1 -2660 3486 3112 1903 240 39 27 chr13 57269197 57269710 -44603459 + LTR40a LTR ERVL 1 519 0 773 146 54 8 chr13 57271134 57271264 -44601905 + AluJo SINE Alu 2 137 -175 1742 202 102 116 chr13 57271658 57272606 -44600563 - LTR1B LTR ERV1 0 1020 1 2067 126 137 13 chr13 57273777 57274158 -44599011 - MSTA LTR MaLR 0 428 1 216 254 60 15 chr13 57274219 57274286 -44598883 + MIR SINE MIR 164 233 -29 207 225 0 0 chr13 57274293 57274333 -44598836 + (TTA)n Simple_repeat Simple_repeat 3 42 0 534 318 54 50 chr13 57274966 57275227 -44597942 + MIR SINE MIR 1 262 0 222 37 0 0 chr13 57275554 57275581 -44597588 + (CA)n Simple_repeat Simple_repeat 2 28 0 330 297 68 60 chr13 57275811 57276060 -44597109 - L1 LINE L1 -865 5281 5031 554 268 54 11 chr13 57276060 57276267 -44596902 - MER67A LTR ERV1 -2 541 295 230 245 29 49 chr13 57276249 57276351 -44596818 - MER67C LTR ERV1 -299 411 312 * 985 194 111 68 chr13 57276356 57276635 -44596534 - MSTD LTR MaLR 0 396 106 9328 93 3 7 chr13 57276674 57277991 -44595178 - L1P LINE L1 -1481 4665 3354 1390 164 13 102 chr13 57278120 57278293 -44594876 - AluJb SINE Alu -34 278 142 6760 53 30 0 chr13 57278293 57279159 -44594010 + L1PA5 LINE L1 5258 6149 -5 1390 164 13 102 chr13 57279159 57279290 -44593879 - AluJb SINE Alu -170 142 1 289 264 111 0 chr13 57280480 57280552 -44592617 + MER45 DNA AcHobo 1 80 -873 229 356 39 0 chr13 57281546 57281650 -44591519 + L2 LINE L2 2903 3010 -262 592 171 92 55 chr13 57281786 57281950 -44591219 + MER104 DNA Tc2 11 180 0 570 285 16 0 chr13 57282129 57282315 -44590854 + L1MD2 LINE L1 6170 6358 -1 23 33 0 0 chr13 57282361 57282391 -44590778 + AT_rich Low_complexity Low_complexity 1 30 0 284 67 0 79 chr13 57282401 57282490 -44590679 + (TA)n Simple_repeat Simple_repeat 1 82 0 279 140 0 0 chr13 57284123 57284173 -44588996 + (TG)n Simple_repeat Simple_repeat 2 51 0 37 23 0 0 chr13 57284971 57285015 -44588154 + AT_rich Low_complexity Low_complexity 1 44 0 2007 81 99 0 chr13 57286095 57286378 -44586791 - AluSp SINE Alu -2 311 1 254 250 16 0 chr13 57287871 57287935 -44585234 - L1MC5 LINE L1 -61 7900 7836 345 355 141 24 chr13 57288169 57288417 -44584752 - HAL1 LINE L1 -2121 386 110 13685 173 47 12 chr13 57289107 57292947 -44580222 - L1MA8 LINE L1 0 6355 2388 200 135 27 0 chr13 57293257 57293294 -44579875 + (TTG)n Simple_repeat Simple_repeat 2 39 0 235 335 7 66 chr13 57293303 57293455 -44579714 - L1MA8 LINE L1 -5991 150 8 229 169 77 77 chr13 57293479 57293544 -44579625 - LTR67 LTR ERVL -65 492 428 422 37 0 0 chr13 57294421 57294475 -44578694 + L1PA3 LINE L1 6099 6152 -3 40 37 0 0 chr13 57294475 57294529 -44578640 + AT_rich Low_complexity Low_complexity 1 54 0 374 341 49 0 chr13 57294539 57294703 -44578466 - MIR SINE MIR -52 210 39 506 274 41 20 chr13 57294829 57294975 -44578194 - L2 LINE L2 -4 3309 3161 204 224 45 0 chr13 57294984 57295051 -44578118 + (TA)n Simple_repeat Simple_repeat 1 70 0 2085 271 138 35 chr13 57295094 57295984 -44577185 - L2 LINE L2 -155 3158 2128 1532 176 61 18 chr13 57295984 57296262 -44576907 + AluJo SINE Alu 11 300 -12 2085 271 138 35 chr13 57296262 57296482 -44576687 - L2 LINE L2 -1185 2128 1932 3921 168 46 9 chr13 57296496 57297515 -44575654 + L1M2 LINE L1 4565 5608 -683 267 296 52 67 chr13 57297749 57297884 -44575285 + MIR3 SINE MIR 30 162 -46 630 212 0 29 chr13 57298099 57298167 -44575002 - MLT1D LTR MaLR 0 505 441 2148 100 27 7 chr13 57298167 57298468 -44574701 + AluSg SINE Alu 1 307 -3 630 212 0 29 chr13 57298468 57298536 -44574633 - MLT1D LTR MaLR -64 441 373 500 283 34 49 chr13 57298531 57298736 -44574433 - MLT1D LTR MaLR -288 217 16 * 3099 89 39 2 chr13 57298829 57299266 -44573903 + MLT2A2 LTR ERVL 1 453 0 395 268 127 28 chr13 57299271 57299484 -44573685 - MLT1J2 LTR MaLR -22 428 195 327 284 0 0 chr13 57299636 57299717 -44573452 + MLT1I LTR MaLR 63 143 -266 793 343 52 7 chr13 57299991 57300277 -44572892 + MLT1I LTR MaLR 91 389 -20 1366 217 123 3 chr13 57300604 57300954 -44572215 - MER63 DNA MER1_type 0 1062 671 489 121 30 61 chr13 57300981 57301080 -44572089 + MER2 DNA MER2_type 2 97 -248 24 0 0 0 chr13 57301986 57302010 -44571159 + AT_rich Low_complexity Low_complexity 1 24 0 2777 3 0 0 chr13 57302016 57302320 -44570849 + AluYa5 SINE Alu 1 304 -7 291 93 0 0 chr13 57302908 57302951 -44570218 + (TG)n Simple_repeat Simple_repeat 2 44 0 210 105 0 0 chr13 57302951 57302989 -44570180 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 57303465 57303488 -44569681 + AT_rich Low_complexity Low_complexity 1 23 0 249 280 149 0 chr13 57303488 57303595 -44569574 + MIR SINE MIR 103 225 -37 215 303 131 14 chr13 57304328 57304473 -44568696 - MIR SINE MIR -12 250 89 370 335 46 58 chr13 57304554 57304814 -44568355 + L2 LINE L2 2876 3132 -181 2152 115 77 6 chr13 57305125 57305463 -44567706 - THE1B LTR MaLR 0 364 3 228 200 0 0 chr13 57305474 57305519 -44567650 - MER116 DNA Mariner -32 48 4 1458 189 38 65 chr13 57307126 57307523 -44565646 + MLT1B LTR MaLR 5 390 0 297 278 176 19 chr13 57307853 57307961 -44565208 + MIR SINE MIR 17 141 -67 824 261 67 53 chr13 57307996 57308175 -44564994 + L1MC5 LINE L1 7357 7532 -429 1546 189 53 36 chr13 57308175 57308534 -44564635 + MLT1A1 LTR MaLR 1 365 0 824 261 67 53 chr13 57308534 57308575 -44564594 + L1MC5 LINE L1 7532 7571 -390 2635 138 9 30 chr13 57308575 57309010 -44564159 - MSTA LTR MaLR -2 426 1 824 261 67 53 chr13 57309010 57309337 -44563832 + L1MC5 LINE L1 7571 7913 -48 384 284 41 30 chr13 57309964 57310161 -44563008 - L1ME4a LINE L1 -15 6106 5908 257 268 37 12 chr13 57311690 57311772 -44561397 + HAL1b LINE L1 626 709 -639 1617 312 120 32 chr13 57311841 57312978 -44560191 + L2 LINE L2 2074 3313 0 1030 156 12 17 chr13 57313036 57313209 -44559960 + L1MA8 LINE L1 5617 5788 -503 239 191 118 0 chr13 57313179 57313247 -44559922 + L1MC4 LINE L1 6628 6703 -1339 * 226 279 0 18 chr13 57313231 57313342 -44559827 + L1MC4 LINE L1 6614 6722 -1320 * 254 213 0 13 chr13 57313343 57313418 -44559751 + (TA)n Simple_repeat Simple_repeat 2 75 0 2584 159 17 6 chr13 57313419 57313891 -44559278 + L1MA8 LINE L1 5786 6262 -29 240 310 75 22 chr13 57314091 57314317 -44558852 + L1ME LINE L1 3593 3830 -2316 230 226 32 43 chr13 57314324 57314417 -44558752 + L1ME LINE L1 3887 3978 -2168 1497 97 0 0 chr13 57314423 57314629 -44558540 - L1PA13 LINE L1 -1 6162 5957 1452 163 17 42 chr13 57314733 57315021 -44558148 + AluSx SINE Alu 14 294 -18 298 298 75 23 chr13 57315206 57315484 -44557685 + L1ME LINE L1 4300 4593 -1553 475 300 53 18 chr13 57315527 57315697 -44557472 + MIR SINE MIR 84 259 -3 799 215 60 5 chr13 57315724 57315924 -44557245 - MER58C DNA MER1_type 0 215 5 264 267 206 7 chr13 57315939 57316085 -44557084 + L1ME LINE L1 5382 5556 -565 457 275 15 8 chr13 57316114 57316268 -44556901 + L1ME LINE L1 5684 5824 -297 2177 129 0 0 chr13 57319130 57319433 -44553736 + AluSx SINE Alu 1 303 -9 185 219 0 16 chr13 57319759 57319823 -44553346 + CT-rich Low_complexity Low_complexity 2 64 0 210 219 0 0 chr13 57319906 57319947 -44553222 + MIR SINE MIR 212 252 -10 307 206 0 0 chr13 57320567 57320640 -44552529 + L1PB4 LINE L1 6084 6156 0 28 0 0 0 chr13 57321098 57321126 -44552043 + AT_rich Low_complexity Low_complexity 1 28 0 2181 182 33 63 chr13 57321407 57321801 -44551368 + MLT1D LTR MaLR 1 377 -128 2413 124 19 11 chr13 57321801 57322173 -44550996 - THE1C LTR MaLR 0 375 1 2181 182 33 63 chr13 57322173 57322299 -44550870 + MLT1D LTR MaLR 377 505 0 1623 178 10 24 chr13 57325476 57325774 -44547395 - AluJb SINE Alu -13 299 6 626 279 55 0 chr13 57326163 57326364 -44546805 - MIR SINE MIR -49 213 2 23 0 0 0 chr13 57326784 57326807 -44546362 + AT_rich Low_complexity Low_complexity 1 23 0 656 87 0 0 chr13 57327917 57328009 -44545160 - L1P LINE L1 -1471 4675 4584 2522 45 0 10 chr13 57328075 57328389 -44544780 + AluY SINE Alu 1 311 0 349 62 42 0 chr13 57328692 57328740 -44544429 - Alu SINE Alu -10 291 242 297 0 0 0 chr13 57329644 57329677 -44543492 + (CA)n Simple_repeat Simple_repeat 2 34 0 34 0 0 0 chr13 57331000 57331034 -44542135 + AT_rich Low_complexity Low_complexity 1 34 0 391 122 81 0 chr13 57332143 57332217 -44540952 - MADE1 DNA Mariner 0 80 1 222 328 45 0 chr13 57332577 57332644 -44540525 + L2 LINE L2 3193 3262 -10 553 296 185 31 chr13 57333309 57333661 -44539508 - HAL1 LINE L1 -606 1901 1496 960 214 78 69 chr13 57333661 57334203 -44538966 - MER39 LTR ERV1 0 643 25 323 250 274 6 chr13 57334257 57334425 -44538744 - HAL1 LINE L1 -1015 1492 1280 181 266 64 75 chr13 57338399 57338493 -44534676 + L2 LINE L2 2992 3084 -188 26 64 0 0 chr13 57339367 57339414 -44533755 + AT_rich Low_complexity Low_complexity 1 47 0 192 77 0 0 chr13 57339971 57339997 -44533172 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 236 239 0 0 chr13 57343391 57343437 -44529732 + L2 LINE L2 3217 3262 -10 553 264 128 54 chr13 57343475 57343717 -44529452 + Zaphod DNA AcHobo 36 295 -3736 1421 239 75 24 chr13 57343755 57344167 -44529002 + Zaphod DNA AcHobo 382 908 -3123 34 84 0 0 chr13 57344167 57344250 -44528919 + AT_rich Low_complexity Low_complexity 1 83 0 1421 239 75 24 chr13 57344250 57344298 -44528871 + Zaphod DNA AcHobo 908 952 -3079 790 66 141 0 chr13 57346145 57346266 -44526903 - L1MA2 LINE L1 0 6304 6167 22 0 0 0 chr13 57346482 57346504 -44526665 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 57346719 57346740 -44526429 + AT_rich Low_complexity Low_complexity 1 21 0 396 0 0 0 chr13 57348535 57348579 -44524590 + (TA)n Simple_repeat Simple_repeat 2 45 0 198 103 0 0 chr13 57348598 57348627 -44524542 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 506 282 168 39 chr13 57348648 57349092 -44524077 - L2 LINE L2 -50 3263 2730 1293 246 72 37 chr13 57350184 57350614 -44522555 - L2 LINE L2 0 3313 2869 192 77 0 0 chr13 57350702 57350728 -44522441 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 24 53 0 0 chr13 57352312 57352350 -44520819 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 57352501 57352523 -44520646 + AT_rich Low_complexity Low_complexity 1 22 0 216 243 42 146 chr13 57353279 57353423 -44519746 + MIR SINE MIR 56 184 -78 21 0 0 0 chr13 57354088 57354109 -44519060 + AT_rich Low_complexity Low_complexity 1 21 0 491 45 0 15 chr13 57354969 57355036 -44518133 + (TCTG)n Simple_repeat Simple_repeat 2 67 0 305 91 0 18 chr13 57355045 57355100 -44518069 + (TTTA)n Simple_repeat Simple_repeat 1 54 0 192 77 0 0 chr13 57355262 57355288 -44517881 + (TGG)n Simple_repeat Simple_repeat 1 26 0 258 239 0 0 chr13 57357681 57357752 -44515417 + (TA)n Simple_repeat Simple_repeat 2 72 0 820 225 90 41 chr13 57357885 57358152 -44515017 + L1MC4 LINE L1 7616 7895 -147 228 67 0 0 chr13 57358152 57358182 -44514987 + (CA)n Simple_repeat Simple_repeat 2 31 0 339 213 0 0 chr13 57358196 57358276 -44514893 + (TA)n Simple_repeat Simple_repeat 2 81 0 380 167 0 144 chr13 57358352 57358367 -44514802 + L1MC4 LINE L1 7903 7919 -123 225 0 0 0 chr13 57358367 57358392 -44514777 + (CA)n Simple_repeat Simple_repeat 2 26 0 380 167 0 144 chr13 57358392 57358508 -44514661 + L1MC4 LINE L1 7919 8015 -27 2106 101 3 10 chr13 57359689 57359977 -44513192 - AluSc SINE Alu -20 289 4 19493 65 2 6 chr13 57361336 57363994 -44509175 - L1P LINE L1 -1364 4782 2135 453 276 87 41 chr13 57364701 57364897 -44508272 + L2 LINE L2 3109 3313 0 2297 108 23 2 chr13 57366574 57367010 -44506159 - L1P4 LINE L1 -568 5595 5154 229 146 0 36 chr13 57368156 57368211 -44504958 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 387 292 118 15 chr13 57368431 57368626 -44504543 - LTR33 LTR ERVL 0 521 307 317 340 16 52 chr13 57368713 57368907 -44504262 - LTR33 LTR ERVL -334 187 1 256 320 8 16 chr13 57369054 57369182 -44503987 + (CATA)n Simple_repeat Simple_repeat 4 130 0 1639 207 44 11 chr13 57369458 57369821 -44503348 + THE1C LTR MaLR 1 375 0 8941 122 36 9 chr13 57369823 57371190 -44501979 + THE1C-int LTR MaLR 3 1405 -175 1920 145 6 22 chr13 57371192 57371516 -44501653 + THE1C LTR MaLR 57 375 0 936 257 115 38 chr13 57371616 57371982 -44501187 - MSTD LTR MaLR -2 394 1 1682 158 78 72 chr13 57372792 57373133 -44500036 + Charlie1b DNA MER1_type 35 381 -2380 7030 142 24 11 chr13 57373133 57374347 -44498822 + Tigger3b DNA MER2_type 2 1231 0 1682 158 78 72 chr13 57374347 57374491 -44498678 + Charlie1b DNA MER1_type 381 523 0 396 262 87 40 chr13 57375353 57375502 -44497667 - MIR SINE MIR -35 227 72 22 35 0 0 chr13 57375502 57375531 -44497638 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 57376272 57376310 -44496859 + AT_rich Low_complexity Low_complexity 1 38 0 840 264 35 16 chr13 57376429 57376683 -44496486 + MIR SINE MIR 2 260 -2 191 353 153 7 chr13 57376940 57377090 -44496079 - L2 LINE L2 -602 2712 2541 3136 173 15 58 chr13 57377151 57377505 -44495664 + L1MB7 LINE L1 5482 5789 -395 1846 155 4 4 chr13 57377505 57377783 -44495386 - AluJb SINE Alu -24 288 11 3136 173 15 58 chr13 57377783 57378163 -44495006 + L1MB7 LINE L1 5789 6184 0 251 308 22 11 chr13 57380421 57380512 -44492657 + L2 LINE L2 3179 3270 -2 26 0 0 0 chr13 57381549 57381575 -44491594 + AT_rich Low_complexity Low_complexity 1 26 0 230 335 115 28 chr13 57382144 57382362 -44490807 - L2 LINE L2 -197 3075 2839 275 177 16 0 chr13 57383748 57383810 -44489359 + GA-rich Low_complexity Low_complexity 2 64 0 22 0 0 0 chr13 57386729 57386751 -44486418 + AT_rich Low_complexity Low_complexity 1 22 0 1221 150 5 14 chr13 57387132 57387339 -44485830 - AluJo SINE Alu -23 289 85 27 62 0 0 chr13 57388298 57388346 -44484823 + AT_rich Low_complexity Low_complexity 1 48 0 1879 100 89 4 chr13 57388541 57388812 -44484357 - AluSq SINE Alu -14 299 6 253 269 41 88 chr13 57388825 57388996 -44484173 + MIR SINE MIR 100 262 0 287 235 259 0 chr13 57389430 57389515 -44483654 - MIR SINE MIR -117 145 39 384 284 52 0 chr13 57389894 57390010 -44483159 - L2 LINE L2 -4 3309 3188 182 36 0 36 chr13 57391237 57391246 -44481923 + (GA)n Simple_repeat Simple_repeat 2 10 -18 1911 157 3 0 chr13 57391246 57391545 -44481624 + AluSx SINE Alu 1 300 -12 182 36 0 36 chr13 57391545 57391563 -44481606 + (GA)n Simple_repeat Simple_repeat 10 28 0 1138 267 127 38 chr13 57391580 57392031 -44481138 - MLT1G1 LTR MaLR 0 595 95 2072 219 37 58 chr13 57392031 57392597 -44480572 + MLT2B3 LTR ERVL 1 554 0 1138 267 127 38 chr13 57392597 57392640 -44480529 - MLT1G1 LTR MaLR -500 95 57 1281 333 121 26 chr13 57393975 57395016 -44478153 + L2 LINE L2 1419 2558 -756 22 35 0 0 chr13 57395113 57395142 -44478027 + AT_rich Low_complexity Low_complexity 1 29 0 348 163 22 22 chr13 57395533 57395625 -44477544 + GA-rich Low_complexity Low_complexity 3 94 0 926 270 102 44 chr13 57396598 57397028 -44476141 + LTR16A1 LTR ERVL 3 457 0 669 328 87 13 chr13 57397028 57397406 -44475763 + HERV16 LTR ERVL 1 406 -4590 2530 333 59 53 chr13 57397482 57397559 -44475610 + ERVL LTR ERVL 2738 2813 -2951 2635 36 7 0 chr13 57397559 57397864 -44475305 - AluY SINE Alu -4 307 1 2530 333 59 53 chr13 57397864 57399357 -44473812 + ERVL LTR ERVL 2813 4317 -1447 14283 179 45 27 chr13 57399489 57402145 -44471024 + L1MA8 LINE L1 2754 5528 -2037 1902 144 58 22 chr13 57402145 57402507 -44470662 + THE1C LTR MaLR 1 375 0 14283 179 45 27 chr13 57402507 57403641 -44469528 + L1MA8 LINE L1 5528 6640 -925 4939 149 44 44 chr13 57403805 57403886 -44469283 + L1MA8 LINE L1 6606 6685 -1025 2162 138 40 0 chr13 57403886 57404235 -44468934 + MER47A DNA MER2_type 1 363 -3 4939 149 44 44 chr13 57404235 57405077 -44468092 + L1MA8 LINE L1 6685 7534 -176 2107 132 13 10 chr13 57405077 57405388 -44467781 + AluSx SINE Alu 1 312 0 4939 149 44 44 chr13 57405388 57405564 -44467605 + L1MA8 LINE L1 7534 7708 -2 547 283 82 29 chr13 57405691 57405935 -44467234 + MLT1L LTR MaLR 308 564 -51 25 65 0 0 chr13 57406010 57406056 -44467113 + AT_rich Low_complexity Low_complexity 1 46 0 511 224 69 0 chr13 57406824 57406940 -44466229 + FLAM_C SINE Alu 1 124 -19 25 0 0 0 chr13 57406941 57406966 -44466203 + AT_rich Low_complexity Low_complexity 1 25 0 724 191 0 0 chr13 57407065 57407180 -44465989 + FLAM_A SINE Alu 1 115 -18 502 116 116 54 chr13 57407227 57407304 -44465865 + L1MA5A LINE L1 6169 6257 -40 1709 148 74 47 chr13 57407304 57407669 -44465500 + THE1C LTR MaLR 1 375 0 502 116 116 54 chr13 57407669 57407703 -44465466 + L1MA5A LINE L1 6257 6287 -10 23 0 0 0 chr13 57407703 57407726 -44465443 + AT_rich Low_complexity Low_complexity 1 23 0 395 301 75 128 chr13 57408015 57408321 -44464848 - L2 LINE L2 -32 3240 2951 258 237 0 0 chr13 57408538 57408597 -44464572 - MER116 DNA Mariner -6 74 16 22 35 0 0 chr13 57408854 57408883 -44464286 + AT_rich Low_complexity Low_complexity 1 29 0 252 74 93 37 chr13 57408883 57408937 -44464232 + ERVL LTR ERVL 5416 5472 -292 209 300 45 36 chr13 57409091 57409201 -44463968 - MIR SINE MIR -49 213 103 256 208 0 21 chr13 57409970 57410018 -44463151 - L2 LINE L2 -12 3301 3255 214 258 220 29 chr13 57410895 57411051 -44462118 - MIR SINE MIR -56 206 19 2659 99 11 11 chr13 57414091 57414466 -44458703 + THE1C LTR MaLR 1 375 0 2285 107 0 0 chr13 57414495 57414795 -44458374 + AluSx SINE Alu 1 300 -12 257 212 13 28 chr13 57416821 57416899 -44456270 - MIR SINE MIR -60 148 71 2057 123 3 0 chr13 57417594 57417879 -44455290 + AluSx SINE Alu 1 286 -26 303 122 0 20 chr13 57419470 57419519 -44453650 - MIR SINE MIR 0 262 215 456 220 18 134 chr13 57420144 57420278 -44452891 + L2 LINE L2 8 107 -3207 2136 103 17 3 chr13 57420278 57420570 -44452599 - AluSc SINE Alu -13 296 1 456 220 18 134 chr13 57420570 57420658 -44452511 + L2 LINE L2 107 204 -3110 487 259 141 41 chr13 57420697 57420917 -44452252 + L2 LINE L2 3072 3313 0 2026 159 12 3 chr13 57422462 57422802 -44450367 - MER2 DNA MER2_type -1 343 1 357 174 0 0 chr13 57423894 57423963 -44449206 + GA-rich Low_complexity Low_complexity 3 71 0 686 242 118 0 chr13 57424956 57425134 -44448035 - MIR SINE MIR -29 233 35 1699 150 0 25 chr13 57426803 57427083 -44446086 + AluJo SINE Alu 37 309 -3 223 297 0 93 chr13 57427283 57427401 -44445768 - L2 LINE L2 -12 3301 3195 1574 179 0 28 chr13 57427672 57427957 -44445212 - AluJo SINE Alu -19 293 17 201 74 0 0 chr13 57429148 57429175 -44443994 + (A)n Simple_repeat Simple_repeat 1 27 0 214 276 52 0 chr13 57430935 57430993 -44442176 - MIR SINE MIR -70 138 78 277 250 69 69 chr13 57432127 57432243 -44440926 + L2 LINE L2 3197 3312 -1 448 273 53 110 chr13 57432955 57433219 -44439950 - MIR SINE MIR -6 256 8 288 263 62 0 chr13 57436593 57436673 -44436496 - MIR3 SINE MIR -11 197 113 262 246 29 14 chr13 57436999 57437068 -44436101 + GA-rich Low_complexity Low_complexity 4 73 0 274 262 156 21 chr13 57438247 57438388 -44434781 + MIR SINE MIR 97 256 -6 317 307 174 6 chr13 57439326 57439511 -44433658 + MIR SINE MIR 4 216 -46 1047 289 57 31 chr13 57439731 57440368 -44432801 + L2 LINE L2 2606 3310 -3 420 285 43 39 chr13 57445018 57445173 -44427996 + MIR SINE MIR 4 158 -63 773 149 0 52 chr13 57445200 57445334 -44427835 - FLAM_C SINE Alu -4 129 3 705 221 93 12 chr13 57445399 57445571 -44427598 - MER5A DNA MER1_type -3 186 1 252 300 107 27 chr13 57445620 57445770 -44427399 + MER5A DNA MER1_type 28 189 0 6778 33 4 0 chr13 57447238 57448046 -44425123 + L1PA5 LINE L1 5343 6153 -1 247 262 204 10 chr13 57448440 57448543 -44424626 + L2 LINE L2 3150 3272 0 250 242 137 32 chr13 57448684 57448779 -44424390 + L2 LINE L2 3190 3294 -19 2157 124 24 37 chr13 57448945 57449325 -44423844 - THE1C LTR MaLR 0 375 1 198 103 0 0 chr13 57449424 57449453 -44423716 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2015 116 30 10 chr13 57450958 57451259 -44421910 + AluSg SINE Alu 1 307 -3 2126 90 0 17 chr13 57451266 57451555 -44421614 + AluSg SINE Alu 1 284 -26 2025 235 39 13 chr13 57451904 57452445 -44420724 - MLT1H1 LTR MaLR 0 555 1 1712 145 84 10 chr13 57452791 57453101 -44420068 - MER1B DNA MER1_type -4 333 1 337 309 13 0 chr13 57453273 57453422 -44419747 + MLT1K LTR MaLR 61 211 -377 425 313 42 7 chr13 57453922 57454066 -44419103 - L2 LINE L2 0 3313 3165 4291 118 1 11 chr13 57454075 57454779 -44418390 + L1P LINE L1 2 698 -5448 222 194 0 0 chr13 57455540 57455576 -44417593 + polypyrimidine Low_complexity Low_complexity 2 37 0 2375 94 0 0 chr13 57455602 57455900 -44417269 - AluSx SINE Alu -14 298 1 840 264 164 52 chr13 57456214 57456734 -44416435 + MLT1K LTR MaLR 10 587 -1 2756 112 38 10 chr13 57456856 57457274 -44415895 + MSTB1 LTR MaLR 3 432 0 471 176 0 0 chr13 57457783 57457874 -44415295 + (TATG)n Simple_repeat Simple_repeat 2 92 0 195 191 21 21 chr13 57457899 57457946 -44415223 - MIR SINE MIR -94 168 122 * 348 293 80 32 chr13 57457940 57458128 -44415041 - MIR3 SINE MIR -7 201 5 224 276 53 0 chr13 57459868 57459944 -44413225 - L2 LINE L2 -5 3267 3188 427 307 38 9 chr13 57459959 57460156 -44413013 - MIR SINE MIR -13 249 50 419 54 0 0 chr13 57460714 57460770 -44412399 - MADE1 DNA Mariner -24 56 1 906 258 23 5 chr13 57462821 57463038 -44410131 + MIR SINE MIR 19 239 -23 180 214 36 54 chr13 57463005 57463061 -44410108 + L2 LINE L2 3251 3305 -8 * 675 304 78 0 chr13 57463210 57463414 -44409755 - MIR SINE MIR 0 262 43 2410 57 0 10 chr13 57463520 57463818 -44409351 + AluY SINE Alu 1 295 -16 783 191 39 11 chr13 57463820 57463998 -44409171 + Tigger2 DNA MER2_type 2536 2718 0 447 19 0 0 chr13 57464061 57464113 -44409056 + (CA)n Simple_repeat Simple_repeat 1 52 0 902 294 16 4 chr13 57465344 57465592 -44407577 - MIR SINE MIR -1 261 11 335 256 56 65 chr13 57465952 57466178 -44406991 - MIR SINE MIR -1 261 40 375 60 0 0 chr13 57466543 57466593 -44406576 + (CA)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr13 57467091 57467114 -44406055 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 377 145 0 0 chr13 57467125 57467194 -44405975 - L1MA5A LINE L1 -19 6278 6210 455 305 40 7 chr13 57467650 57467801 -44405368 - L2 LINE L2 0 3313 3158 40775 34 21 3 chr13 57467802 57473843 -44399326 + L1PA3 LINE L1 1 6155 0 338 373 23 73 chr13 57474249 57474549 -44398620 - L2 LINE L2 -1 3271 2987 894 190 5 53 chr13 57476499 57476740 -44396429 + L1MC4 LINE L1 7604 7712 -96 2390 97 0 0 chr13 57476761 57477070 -44396099 + AluSc SINE Alu 1 309 0 325 155 175 10 chr13 57477091 57477188 -44395981 + L1MC4 LINE L1 7919 8031 -11 4769 159 20 11 chr13 57477734 57478591 -44394578 + MER6 DNA MER2_type 1 865 0 295 289 21 10 chr13 57480506 57480603 -44392566 - MIR SINE MIR -4 258 161 216 295 27 89 chr13 57480860 57480972 -44392197 + MIR SINE MIR 74 178 -84 1801 126 70 0 chr13 57481042 57481313 -44391856 + AluSx SINE Alu 5 294 -18 1779 115 133 0 chr13 57482022 57482292 -44390877 - AluSx SINE Alu -6 306 1 326 289 47 8 chr13 57483065 57483193 -44389976 - MIR SINE MIR -77 185 53 980 198 5 0 chr13 57483208 57483405 -44389764 + L1PB1 LINE L1 3 200 -6663 4986 155 53 10 chr13 57483405 57484492 -44388677 + L1PB1 LINE L1 634 1673 -5194 2195 131 0 0 chr13 57484492 57484790 -44388379 + AluSx SINE Alu 3 300 -12 4986 155 53 10 chr13 57484790 57489494 -44383675 + L1PB1 LINE L1 1673 6866 -1 33 0 0 0 chr13 57489495 57489528 -44383641 + AT_rich Low_complexity Low_complexity 1 33 0 5450 141 20 0 chr13 57489649 57490848 -44382321 + L1PA16 LINE L1 4932 6166 0 238 386 70 0 chr13 57490862 57491033 -44382136 + L3b LINE CR1 1208 1390 -193 2018 127 7 19 chr13 57491044 57491351 -44381818 - AluSg SINE Alu -7 303 1 971 121 13 6 chr13 57491351 57491508 -44381661 - MLT1A1 LTR MaLR -207 158 1 289 125 18 0 chr13 57491509 57491565 -44381604 + L1MD3 LINE L1 7928 7984 -11 28 0 0 0 chr13 57492224 57492252 -44380917 + AT_rich Low_complexity Low_complexity 1 28 0 237 195 52 26 chr13 57492654 57492731 -44380438 + L1M1 LINE L1 5689 5767 -536 778 186 30 118 chr13 57492999 57493236 -44379933 - MLT1F1 LTR MaLR -3 564 375 1199 135 65 0 chr13 57493320 57493505 -44379664 + AluSq SINE Alu 1 197 -116 3024 146 74 31 chr13 57493505 57493719 -44379450 - L1MC1 LINE L1 -111 6222 6019 2147 130 0 3 chr13 57493719 57494027 -44379142 - AluSx SINE Alu -5 307 1 3024 146 74 31 chr13 57494027 57494461 -44378708 - L1MC1 LINE L1 -314 6019 5546 880 262 60 28 chr13 57494905 57495157 -44378012 + MIR SINE MIR 2 261 -1 1306 150 115 24 chr13 57495252 57495539 -44377630 + THE1C LTR MaLR 1 313 -62 472 295 123 72 chr13 57495749 57495930 -44377239 + L2 LINE L2 2924 3094 -178 2483 146 24 16 chr13 57495930 57496356 -44376813 - MSTB1 LTR MaLR -3 429 1 472 295 123 72 chr13 57496356 57496506 -44376663 + L2 LINE L2 3094 3272 0 753 179 13 7 chr13 57496691 57496842 -44376327 + MLT1A1 LTR MaLR 214 365 0 327 304 88 23 chr13 57498082 57498253 -44374916 - MIR SINE MIR 0 262 81 1645 187 24 35 chr13 57498700 57499069 -44374100 + MLT1A1 LTR MaLR 1 365 0 2064 168 27 56 chr13 57499439 57499619 -44373550 - Tigger2a DNA MER2_type -2274 434 250 2427 57 0 10 chr13 57499619 57499917 -44373252 - AluY SINE Alu -16 295 1 2064 168 27 56 chr13 57499917 57500182 -44372987 - Tigger2a DNA MER2_type -2458 250 2 262 307 114 0 chr13 57500431 57500519 -44372650 + MER5A DNA MER1_type 22 119 -70 185 289 133 12 chr13 57500445 57500528 -44372641 - MER5A DNA MER1_type -24 165 73 * 900 126 32 47 chr13 57500824 57501014 -44372155 + L1MA8 LINE L1 6104 6290 -1 295 216 68 0 chr13 57501293 57501367 -44371802 + L2 LINE L2 2263 2341 -973 245 356 26 17 chr13 57501381 57501496 -44371673 + L2 LINE L2 2444 2559 -755 1331 145 5 0 chr13 57501501 57501701 -44371468 - L1MC1 LINE L1 -20 6313 6113 912 270 48 0 chr13 57501704 57501934 -44371235 + L2 LINE L2 2549 2789 -525 1331 39 2 33 chr13 57502337 57502571 -44370598 + (TTTC)n Simple_repeat Simple_repeat 1 409 0 1785 96 89 58 chr13 57502582 57502873 -44370296 - AluSx SINE Alu -12 300 1 22 0 0 0 chr13 57503290 57503312 -44369857 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr13 57503411 57503434 -44369735 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 200 111 28 0 chr13 57504267 57504303 -44368866 + A-rich Low_complexity Low_complexity 6 42 0 24 32 0 0 chr13 57504622 57504653 -44368516 + AT_rich Low_complexity Low_complexity 1 31 0 2111 94 49 7 chr13 57507386 57507673 -44365496 - AluSq SINE Alu -14 299 1 831 286 44 12 chr13 57507986 57508238 -44364931 + MIR SINE MIR 3 262 0 181 349 64 37 chr13 57508270 57508379 -44364790 + L2 LINE L2 343 454 -2860 443 312 211 10 chr13 57508398 57508706 -44364463 - L3 LINE CR1 -1073 504 135 4660 159 12 5 chr13 57508794 57509594 -44363575 - L1PB4 LINE L1 -14 6142 5337 697 184 117 15 chr13 57509794 57510000 -44363169 - L1MCc LINE L1 -6181 242 16 321 305 39 0 chr13 57510101 57510229 -44362940 - MLT1I LTR MaLR -14 395 263 2717 29 0 3 chr13 57510335 57510647 -44362522 + AluY SINE Alu 1 311 0 288 53 0 0 chr13 57511412 57511450 -44361719 + (TG)n Simple_repeat Simple_repeat 1 38 0 204 122 98 0 chr13 57511497 57511538 -44361631 + L2 LINE L2 2150 2194 -1120 1271 255 63 24 chr13 57512364 57512880 -44360289 - MLT1E LTR MaLR 0 593 2 210 428 38 15 chr13 57513040 57513171 -44359998 + L2 LINE L2 3103 3236 -36 262 257 0 57 chr13 57513366 57513436 -44359733 + L2 LINE L2 3207 3272 0 283 266 0 0 chr13 57513800 57513864 -44359305 + MIR SINE MIR 157 220 -42 26 30 0 0 chr13 57514050 57514083 -44359086 + AT_rich Low_complexity Low_complexity 1 33 0 1782 184 3 0 chr13 57514086 57514374 -44358795 - AluJb SINE Alu -23 289 1 1913 177 25 33 chr13 57514453 57514821 -44358348 - MLT1A1 LTR MaLR 0 365 1 222 323 21 43 chr13 57514877 57514970 -44358199 + L2 LINE L2 3222 3312 -1 3620 132 31 86 chr13 57515311 57516000 -44357169 - L1MB4 LINE L1 -70 6110 5476 270 81 0 0 chr13 57516000 57516037 -44357132 + (TA)n Simple_repeat Simple_repeat 2 38 0 3620 132 31 86 chr13 57516037 57516170 -44356999 - L1MB4 LINE L1 -704 5476 5337 228 253 46 35 chr13 57516394 57516481 -44356688 + (TCTCTG)n Simple_repeat Simple_repeat 6 93 0 1911 119 36 7 chr13 57516520 57516797 -44356372 - AluSc SINE Alu -22 287 3 282 192 0 0 chr13 57516936 57516988 -44356181 + L2 LINE L2 3256 3307 -6 284 295 0 0 chr13 57518445 57518530 -44354639 + MIR SINE MIR 76 161 -47 1385 172 26 19 chr13 57518667 57518934 -44354235 + AluJo SINE Alu 43 311 -1 204 158 0 0 chr13 57519028 57519066 -44354103 + T-rich Low_complexity Low_complexity 1 38 0 236 349 47 0 chr13 57519411 57519497 -44353672 - MIR SINE MIR -109 153 64 227 265 177 0 chr13 57520720 57520806 -44352363 + MIR SINE MIR 5 107 -103 2290 129 13 24 chr13 57520956 57521335 -44351834 + THE1C LTR MaLR 1 375 0 202 358 37 45 chr13 57521908 57522042 -44351127 + L2 LINE L2 3140 3272 0 231 198 104 52 chr13 57522105 57522201 -44350968 - MIR SINE MIR -50 212 112 2263 126 0 0 chr13 57523142 57523451 -44349718 + AluSx SINE Alu 1 309 -3 713 339 24 0 chr13 57523503 57523751 -44349418 - MIR SINE MIR -7 255 2 22 35 0 0 chr13 57523965 57523994 -44349175 + AT_rich Low_complexity Low_complexity 1 29 0 399 320 55 0 chr13 57525271 57525399 -44347770 + MIR SINE MIR 20 154 -108 263 280 27 13 chr13 57526361 57526436 -44346733 - L2 LINE L2 -1 3271 3196 2169 98 0 10 chr13 57526458 57526754 -44346415 + AluSx SINE Alu 1 293 -19 318 26 0 0 chr13 57526943 57526982 -44346187 + (TG)n Simple_repeat Simple_repeat 2 40 0 483 274 85 73 chr13 57527456 57527629 -44345540 - MLT1I LTR MaLR 0 409 229 2270 105 0 19 chr13 57527629 57527943 -44345226 - AluSx SINE Alu -4 308 1 483 274 85 73 chr13 57527943 57528086 -44345083 - MLT1I LTR MaLR -180 229 89 438 387 60 19 chr13 57528685 57529049 -44344120 + L2 LINE L2 1571 1949 -1365 22 56 0 0 chr13 57529065 57529101 -44344068 + AT_rich Low_complexity Low_complexity 1 36 0 315 0 0 0 chr13 57530863 57530898 -44342271 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 57531300 57531321 -44341848 + AT_rich Low_complexity Low_complexity 1 21 0 1718 148 0 19 chr13 57531321 57531592 -44341577 - AluJb SINE Alu -24 288 23 1021 187 42 115 chr13 57532205 57532460 -44340709 - MLT1A2 LTR MaLR 0 374 157 2295 108 0 0 chr13 57532460 57532755 -44340414 + AluSx SINE Alu 1 295 -17 1021 187 42 115 chr13 57532755 57532900 -44340269 - MLT1A2 LTR MaLR -217 157 3 369 43 0 0 chr13 57533334 57533381 -44339788 + (TG)n Simple_repeat Simple_repeat 2 48 0 938 178 120 0 chr13 57534897 57535088 -44338081 + AluJb SINE Alu 99 312 0 25 31 0 0 chr13 57535534 57535566 -44337603 + AT_rich Low_complexity Low_complexity 1 32 0 338 265 165 29 chr13 57536124 57536294 -44336875 + MIR SINE MIR 28 220 -42 2058 132 35 51 chr13 57536459 57536829 -44336340 - THE1B LTR MaLR 0 364 1 337 331 55 11 chr13 57537017 57537198 -44335971 + MIR SINE MIR 31 219 -43 237 333 16 0 chr13 57537253 57537316 -44335853 + MIR SINE MIR 50 113 -95 21 0 0 0 chr13 57541115 57541136 -44332033 + AT_rich Low_complexity Low_complexity 1 21 0 194 235 59 20 chr13 57541532 57541583 -44331586 - L2 LINE L2 -10 3303 3251 * 632 279 56 14 chr13 57541556 57541771 -44331398 - MIR SINE MIR -30 232 9 1785 238 22 24 chr13 57542031 57542494 -44330675 + LTR40b LTR ERVL 1 462 0 209 305 114 29 chr13 57542918 57543023 -44330146 + MIR3 SINE MIR 2 115 -93 478 323 24 0 chr13 57543151 57543275 -44329894 - MIR3 SINE MIR -9 199 73 297 253 13 38 chr13 57544885 57544964 -44328205 - MIR SINE MIR -2 260 184 482 351 69 35 chr13 57545535 57545968 -44327201 - L1M4 LINE L1 -930 5216 4769 255 241 0 25 chr13 57546025 57546104 -44327065 + CT-rich Low_complexity Low_complexity 2 78 0 365 272 70 55 chr13 57546108 57546135 -44327034 - L1M4 LINE L1 -1430 4716 4691 2255 85 3 41 chr13 57546135 57546451 -44326718 - AluSq SINE Alu -9 304 1 365 272 70 55 chr13 57546451 57546680 -44326489 - L1M4 LINE L1 -1455 4691 4456 24 0 0 0 chr13 57546723 57546747 -44326422 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr13 57546800 57546841 -44326328 + AT_rich Low_complexity Low_complexity 1 41 0 2608 52 3 0 chr13 57547357 57547663 -44325506 - AluY SINE Alu -4 307 1 25 0 0 0 chr13 57547993 57548018 -44325151 + AT_rich Low_complexity Low_complexity 1 25 0 400 308 144 19 chr13 57548259 57548467 -44324702 - MIR SINE MIR -15 247 14 249 360 0 0 chr13 57548701 57548776 -44324393 - MIR3 SINE MIR -53 155 81 847 262 46 17 chr13 57548785 57549022 -44324147 - MIR SINE MIR -5 257 14 455 293 47 13 chr13 57549728 57549878 -44323291 + MIR SINE MIR 46 200 -62 362 306 111 7 chr13 57550013 57550157 -44323012 + MIR3 SINE MIR 48 206 -2 2060 119 46 32 chr13 57550396 57550766 -44322403 + THE1C LTR MaLR 1 375 0 2076 111 9 25 chr13 57550884 57551200 -44321969 - AluY SINE Alu 0 311 1 2274 133 26 0 chr13 57551206 57551596 -44321573 - L1MA3 LINE L1 0 6305 5906 1281 195 107 70 chr13 57551817 57552335 -44320834 + LTR1B LTR ERV1 342 1005 -15 1822 164 122 15 chr13 57553450 57553617 -44319552 + MLT1C LTR MaLR 1 149 -318 252 0 0 0 chr13 57553617 57553645 -44319524 + (CA)n Simple_repeat Simple_repeat 2 29 0 1822 164 122 15 chr13 57553645 57553886 -44319283 + MLT1C LTR MaLR 149 453 -14 249 33 0 0 chr13 57554077 57554107 -44319062 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 191 167 0 0 chr13 57554108 57554138 -44319031 - L2 LINE L2 -18 3295 3266 2130 132 10 0 chr13 57554664 57555038 -44318131 + AluSp SINE Alu 1 377 0 251 309 25 0 chr13 57555764 57555845 -44317324 - L2 LINE L2 0 3313 3231 1022 97 14 14 chr13 57556555 57556700 -44316469 - AluSg/x SINE Alu -11 301 157 1830 111 8 4 chr13 57556829 57557081 -44316088 + AluSx SINE Alu 41 293 -19 2718 128 0 11 chr13 57557083 57557521 -44315648 - L1PB4 LINE L1 -109 6047 5615 323 311 61 18 chr13 57558181 57558345 -44314824 + MIR SINE MIR 82 252 -10 998 185 0 0 chr13 57559251 57559413 -44313756 - FRAM SINE Alu -4 162 1 2532 105 25 3 chr13 57559483 57559846 -44313323 + THE1C LTR MaLR 1 371 -4 322 155 28 0 chr13 57559850 57559921 -44313248 - MADE1 DNA Mariner -4 76 4 226 238 32 0 chr13 57560065 57560128 -44313041 - MIR SINE MIR -110 152 88 521 335 29 10 chr13 57560518 57560763 -44312406 + MIR SINE MIR 6 256 -6 254 222 79 0 chr13 57561504 57561567 -44311602 + MIR SINE MIR 89 156 -106 203 152 0 0 chr13 57561574 57561607 -44311562 + (TG)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr13 57561618 57561641 -44311528 + (T)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr13 57561999 57562022 -44311147 + AT_rich Low_complexity Low_complexity 1 23 0 325 294 155 39 chr13 57562283 57562556 -44310613 - L2 LINE L2 -1018 2296 1963 270 0 0 0 chr13 57562556 57562586 -44310583 + (CA)n Simple_repeat Simple_repeat 1 30 0 325 294 155 39 chr13 57562586 57562700 -44310469 - L2 LINE L2 -1351 1963 1864 932 30 67 0 chr13 57562827 57562991 -44310178 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 261 364 104 0 chr13 57563168 57563322 -44309847 + L2 LINE L2 3102 3271 -1 24 0 0 0 chr13 57564049 57564073 -44309096 + AT_rich Low_complexity Low_complexity 1 24 0 868 187 22 70 chr13 57565286 57565516 -44307653 + MER20 DNA MER1_type 1 219 0 325 385 112 27 chr13 57566306 57566644 -44306525 + L2 LINE L2 2905 3271 -1 352 383 84 11 chr13 57567108 57567382 -44305787 + L3 LINE CR1 1278 1571 -6 2320 101 0 0 chr13 57569593 57569890 -44303279 + AluSx SINE Alu 1 297 -15 252 295 98 36 chr13 57570824 57570936 -44302233 + MIR SINE MIR 23 141 -67 2688 29 0 0 chr13 57572995 57573303 -44299866 + AluY SINE Alu 1 308 -3 2416 99 5 26 chr13 57573962 57574346 -44298823 - L1PB1 LINE L1 -8 6143 5768 1323 249 131 30 chr13 57574579 57575146 -44298023 + MLT2F LTR ERVL 40 663 0 214 285 15 92 chr13 57575495 57575625 -44297544 - MIR SINE MIR -26 236 117 716 151 36 14 chr13 57576689 57576828 -44296341 - AluJo SINE Alu -170 142 1 574 277 24 36 chr13 57577344 57577510 -44295659 - MIR3 SINE MIR -6 202 39 224 271 47 12 chr13 57577718 57577803 -44295366 - MER91A DNA MER1_type -88 108 21 943 191 16 26 chr13 57577805 57577994 -44295175 + MER5A DNA MER1_type 2 188 -1 373 274 44 30 chr13 57578743 57578878 -44294291 - L3 LINE CR1 -795 782 646 1905 99 0 15 chr13 57578912 57579174 -44293995 + AluSx SINE Alu 43 300 -12 280 301 73 8 chr13 57579190 57579313 -44293856 - L2 LINE L2 -159 3154 3024 298 312 11 11 chr13 57579417 57579510 -44293659 - L3 LINE CR1 -1292 285 193 266 273 161 63 chr13 57580628 57580833 -44292336 + MIR SINE MIR 32 256 -6 281 255 76 6 chr13 57580874 57581031 -44292138 - L1ME4a LINE L1 -5 6116 5949 239 151 247 0 chr13 57581057 57581130 -44292039 - L1ME3A LINE L1 -3 6167 6077 619 317 88 0 chr13 57581180 57581407 -44291762 + MIR SINE MIR 1 247 -15 261 281 15 74 chr13 57581912 57582047 -44291122 - MIR SINE MIR -16 246 120 239 204 61 0 chr13 57582251 57582300 -44290869 - L2 LINE L2 0 3313 3262 319 250 0 65 chr13 57582434 57582526 -44290643 + MIR SINE MIR 110 195 -67 25 31 0 0 chr13 57585955 57585987 -44287182 + AT_rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chr13 57586365 57586391 -44286778 + (A)n Simple_repeat Simple_repeat 1 26 0 226 361 9 0 chr13 57586778 57586886 -44286283 + L1ME4a LINE L1 5483 5591 -530 599 259 145 48 chr13 57586916 57587205 -44285964 - L2 LINE L2 0 3313 2997 332 269 57 69 chr13 57587761 57587830 -44285339 + L1ME4a LINE L1 5949 6017 -104 783 188 156 5 chr13 57587830 57588022 -44285147 + MER58A DNA MER1_type 4 224 0 332 269 57 69 chr13 57588022 57588127 -44285042 + L1ME4a LINE L1 6017 6121 0 805 250 48 36 chr13 57588270 57588518 -44284651 - MIR SINE MIR -11 251 1 2442 77 7 0 chr13 57588694 57588994 -44284175 - AluSp SINE Alu -11 302 1 2037 170 16 64 chr13 57589038 57589473 -44283696 - MLT2D LTR ERVL 0 414 1 192 77 0 0 chr13 57590286 57590312 -44282857 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1676 214 0 0 chr13 57590344 57590633 -44282536 - AluJo SINE Alu -23 289 1 2153 126 51 31 chr13 57590818 57591174 -44281995 - THE1B LTR MaLR 0 364 2 695 80 0 0 chr13 57591369 57591457 -44281712 - AluS SINE Alu -211 102 15 219 288 150 12 chr13 57591457 57591537 -44281632 + L2 LINE L2 3207 3297 -16 244 266 0 16 chr13 57591625 57591689 -44281480 + MIR SINE MIR 200 262 0 247 347 59 55 chr13 57591734 57591953 -44281216 - L2 LINE L2 -477 2837 2618 885 139 0 0 chr13 57592060 57592189 -44280980 + AluSg/x SINE Alu 174 302 -8 256 305 37 0 chr13 57592197 57592279 -44280890 + L3b LINE CR1 1401 1485 -98 188 346 19 39 chr13 57593161 57593265 -44279904 + L3 LINE CR1 1452 1553 -24 315 301 0 14 chr13 57593364 57593510 -44279659 + (TA)n Simple_repeat Simple_repeat 1 144 0 25 51 0 0 chr13 57593993 57594032 -44279137 + AT_rich Low_complexity Low_complexity 1 39 0 289 257 82 14 chr13 57596506 57596689 -44276480 + MLT1I LTR MaLR 310 402 -7 1082 179 63 0 chr13 57596816 57597006 -44276163 + AluJo SINE Alu 87 288 -24 906 236 35 50 chr13 57597472 57597731 -44275438 - MIR SINE MIR 0 262 8 216 97 0 0 chr13 57598078 57598109 -44275060 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 697 274 11 0 chr13 57598505 57598684 -44274485 - MIR SINE MIR -16 246 66 308 333 217 28 chr13 57599298 57599896 -44273273 - L2 LINE L2 -374 2940 2230 501 163 0 0 chr13 57600077 57600157 -44273012 + AluJ/FLAM SINE Alu 5 84 -228 189 394 126 0 chr13 57600531 57600658 -44272511 - L2 LINE L2 -4 3268 3126 2177 80 77 0 chr13 57600736 57601022 -44272147 - AluSp SINE Alu -5 308 1 2174 117 0 0 chr13 57601101 57601408 -44271761 + AluY SINE Alu 5 311 0 1792 218 40 49 chr13 57603260 57604517 -44268652 + L1MB8 LINE L1 4970 6167 -11 2249 72 34 0 chr13 57604519 57604684 -44268485 - AluY SINE Alu -8 303 122 180 0 0 0 chr13 57604684 57604704 -44268465 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2249 72 34 0 chr13 57604704 57604831 -44268338 - AluY SINE Alu -189 122 1 721 308 33 14 chr13 57605102 57605316 -44267853 - MIR SINE MIR -43 219 2 1672 194 47 53 chr13 57605388 57605856 -44267313 - MLT1C LTR MaLR -2 465 1 284 260 0 14 chr13 57606128 57606201 -44266968 - L2 LINE L2 -1 3312 3241 1968 246 88 40 chr13 57606428 57607186 -44265983 + L2 LINE L2 2334 3147 -166 1475 151 21 112 chr13 57607186 57607517 -44265652 - AluYb8 SINE Alu -17 301 1 1968 246 88 40 chr13 57607517 57607658 -44265511 + L2 LINE L2 3147 3280 -33 498 235 255 5 chr13 57607987 57608183 -44264986 + MIR SINE MIR 8 252 -10 25 23 0 23 chr13 57608291 57608311 -44264858 + AT_rich Low_complexity Low_complexity 1 20 -22 7480 26 8 1 chr13 57608311 57609699 -44263470 + L1PA4 LINE L1 4758 6152 -3 25 23 0 23 chr13 57609699 57609721 -44263448 + AT_rich Low_complexity Low_complexity 20 42 0 209 32 0 32 chr13 57611549 57611580 -44261589 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 2030 103 7 11 chr13 57611580 57611861 -44261308 - AluSx SINE Alu -32 280 1 1490 158 9 104 chr13 57611877 57612300 -44260869 + L1MB4 LINE L1 5797 6179 -1 1909 126 4 0 chr13 57612311 57612573 -44260596 + AluSp SINE Alu 6 268 -45 888 237 9 73 chr13 57612590 57612906 -44260263 + MER46C DNA MER2_type 4 299 -39 1014 223 107 27 chr13 57613097 57613367 -44259802 + L1MD2 LINE L1 5992 6294 -65 1939 174 13 35 chr13 57613367 57613582 -44259587 - MLT1A1 LTR MaLR 0 365 160 2374 84 0 0 chr13 57613582 57613878 -44259291 - AluSg SINE Alu -14 296 1 1939 174 13 35 chr13 57613878 57614035 -44259134 - MLT1A1 LTR MaLR -205 160 1 1014 223 107 27 chr13 57614035 57614092 -44259077 + L1MD2 LINE L1 6294 6345 -14 28 0 0 0 chr13 57614751 57614779 -44258390 + AT_rich Low_complexity Low_complexity 1 28 0 237 195 52 26 chr13 57615181 57615258 -44257911 + L1M1 LINE L1 5689 5767 -536 778 186 30 118 chr13 57615526 57615763 -44257406 - MLT1F1 LTR MaLR -3 564 375 1199 135 65 0 chr13 57615847 57616032 -44257137 + AluSq SINE Alu 1 197 -116 3024 146 74 31 chr13 57616032 57616246 -44256923 - L1MC1 LINE L1 -111 6222 6019 2147 130 0 3 chr13 57616246 57616554 -44256615 - AluSx SINE Alu -5 307 1 3024 146 74 31 chr13 57616554 57616988 -44256181 - L1MC1 LINE L1 -314 6019 5546 880 262 60 28 chr13 57617432 57617684 -44255485 + MIR SINE MIR 2 261 -1 1306 150 115 24 chr13 57617779 57618066 -44255103 + THE1C LTR MaLR 1 313 -62 472 295 123 72 chr13 57618276 57618457 -44254712 + L2 LINE L2 2924 3094 -178 2498 143 24 16 chr13 57618457 57618883 -44254286 - MSTB1 LTR MaLR -3 429 1 472 295 123 72 chr13 57618883 57619033 -44254136 + L2 LINE L2 3094 3272 0 753 179 13 7 chr13 57619218 57619369 -44253800 + MLT1A1 LTR MaLR 214 365 0 326 304 88 23 chr13 57620609 57620780 -44252389 - MIR SINE MIR 0 262 81 1637 187 24 35 chr13 57621227 57621596 -44251573 + MLT1A1 LTR MaLR 1 365 0 324 0 0 0 chr13 57622861 57622897 -44250272 + (TG)n Simple_repeat Simple_repeat 2 37 0 198 44 44 44 chr13 57622918 57622963 -44250206 + (CAGAGA)n Simple_repeat Simple_repeat 3 47 0 485 242 42 0 chr13 57622963 57623083 -44250086 - MLT2D LTR ERVL -60 354 230 * 1719 204 90 20 chr13 57623081 57623483 -44249686 - MLT2B1 LTR ERVL -90 430 1 1403 235 38 3 chr13 57623483 57623801 -44249368 + MLT1D LTR MaLR 75 403 -102 372 261 101 10 chr13 57623801 57624000 -44249169 + Charlie7 DNA MER1_type 2034 2250 -362 431 194 73 33 chr13 57624005 57624136 -44249033 + MSTB2 LTR MaLR 220 407 -50 2206 151 68 17 chr13 57624240 57624651 -44248518 - MSTB1 LTR MaLR 0 432 1 1893 145 71 14 chr13 57624662 57625013 -44248156 - THE1C LTR MaLR -2 373 3 1794 134 27 0 chr13 57625051 57625349 -44247820 + MSTA LTR MaLR 1 306 -122 4289 190 18 4 chr13 57625349 57626176 -44246993 + MSTA-int LTR MaLR 234 1072 -579 2252 132 0 0 chr13 57626252 57626562 -44246607 - AluSx SINE Alu -2 310 1 331 298 0 21 chr13 57626668 57626762 -44246407 - MIR SINE MIR -169 93 2 212 171 0 0 chr13 57626773 57626808 -44246361 + L2 LINE L2 3278 3312 -1 207 0 0 0 chr13 57626913 57626936 -44246233 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 196 339 0 0 chr13 57628495 57628554 -44244615 + L2 LINE L2 3214 3272 0 236 250 119 36 chr13 57630013 57630097 -44243072 + L2 LINE L2 3098 3188 -84 451 292 104 50 chr13 57630401 57630603 -44242566 + L2 LINE L2 3060 3272 0 22 35 0 0 chr13 57630734 57630763 -44242406 + AT_rich Low_complexity Low_complexity 1 29 0 2149 233 14 17 chr13 57630984 57631500 -44241669 - LTR40a LTR ERVL -5 514 1 1872 140 59 7 chr13 57631576 57631862 -44241307 - AluSx SINE Alu -11 301 1 431 285 22 66 chr13 57631899 57632036 -44241133 + MIR SINE MIR 107 237 -25 263 236 0 36 chr13 57632136 57632191 -44240978 - L2 LINE L2 -9 3263 3211 1748 160 20 10 chr13 57632870 57633163 -44240006 - AluJo SINE Alu -16 296 1 2236 118 3 0 chr13 57633877 57634181 -44238988 + AluSx SINE Alu 1 305 -7 802 69 10 0 chr13 57634182 57634283 -44238886 + AluSg/x SINE Alu 195 296 -16 294 299 28 19 chr13 57635265 57635372 -44237797 - MIR SINE MIR -10 252 145 343 281 120 27 chr13 57635498 57635648 -44237521 - MER113 DNA MER1_type? -43 478 343 2412 88 7 0 chr13 57635648 57635953 -44237216 - AluSx SINE Alu -3 309 3 343 281 120 27 chr13 57635953 57636094 -44237075 - MER113 DNA MER1_type? -178 343 160 7855 36 18 0 chr13 57637025 57638772 -44234397 - L1PA5 LINE L1 0 6154 4389 843 84 0 0 chr13 57638772 57638879 -44234290 - U6 snRNA snRNA 0 107 1 614 286 95 33 chr13 57639284 57639525 -44233644 + MIR SINE MIR 4 259 -3 643 244 81 50 chr13 57639570 57639791 -44233378 - L2 LINE L2 0 3313 3086 227 277 92 25 chr13 57640040 57640159 -44233010 + L2 LINE L2 2605 2731 -583 1907 194 48 55 chr13 57640214 57640724 -44232445 + L1MB3 LINE L1 5626 6133 -50 2299 109 0 3 chr13 57640724 57641026 -44232143 + AluSx SINE Alu 1 301 -11 1907 194 48 55 chr13 57641026 57641061 -44232108 + L1MB3 LINE L1 6133 6167 -16 24 53 0 0 chr13 57643684 57643722 -44229447 + AT_rich Low_complexity Low_complexity 1 38 0 1452 195 50 8 chr13 57644947 57645209 -44227960 - AluJo SINE Alu -39 273 1 23 54 0 0 chr13 57645719 57645756 -44227413 + AT_rich Low_complexity Low_complexity 1 37 0 372 313 56 14 chr13 57645865 57646009 -44227160 + MIR SINE MIR 8 157 -105 1089 175 63 9 chr13 57646010 57646096 -44227073 - MER46A DNA MER2_type -2496 235 155 1879 165 0 58 chr13 57646096 57646460 -44226709 + MER2 DNA MER2_type 2 344 0 1089 175 63 9 chr13 57646460 57646596 -44226573 - MER46A DNA MER2_type -2576 155 1 193 294 22 43 chr13 57646609 57646701 -44226468 + MIR SINE MIR 173 262 0 533 218 0 0 chr13 57646754 57646878 -44226291 + MSTA-int LTR MaLR 585 708 -943 * 7764 166 17 4 chr13 57646877 57648254 -44224915 + MSTA-int LTR MaLR 240 1635 -16 2088 143 48 71 chr13 57648273 57648667 -44224502 + MSTA LTR MaLR 5 390 -38 1978 145 7 3 chr13 57648667 57648970 -44224199 - AluSx SINE Alu -7 305 2 2088 143 48 71 chr13 57648970 57649009 -44224160 + MSTA LTR MaLR 390 428 0 226 297 33 22 chr13 57649582 57649673 -44223496 - MLT-int LTR MaLR -972 763 672 3119 188 57 19 chr13 57649769 57650089 -44223080 - MLT1B-int LTR MaLR -660 711 405 2182 128 3 3 chr13 57650089 57650395 -44222774 - AluSq SINE Alu -7 306 1 3119 188 57 19 chr13 57650395 57650759 -44222410 - MLT1B-int LTR MaLR -966 405 1 871 236 49 103 chr13 57650759 57651166 -44222003 - MLT1B LTR MaLR 0 390 6 2284 82 0 13 chr13 57651230 57651534 -44221635 - AluY SINE Alu -11 300 1 399 281 138 0 chr13 57652141 57652375 -44220794 - L1ME4a LINE L1 -260 5861 5593 521 170 188 6 chr13 57652430 57652595 -44220574 + MER5C DNA MER1_type 93 287 -37 2391 88 3 0 chr13 57653362 57653669 -44219500 + AluSp SINE Alu 1 308 -5 3197 242 63 16 chr13 57653706 57654603 -44218566 - L1MEc LINE L1 -5413 983 44 248 259 0 47 chr13 57654624 57654709 -44218460 - L1MEd LINE L1 -5090 1029 949 670 244 111 6 chr13 57654905 57655077 -44218092 + MIR SINE MIR 2 191 -71 199 224 90 60 chr13 57655097 57655164 -44218005 + L2 LINE L2 3225 3293 -20 1564 155 63 29 chr13 57656115 57656463 -44216706 + MER46B DNA MER2_type 1 235 -1 461 348 47 99 chr13 57656479 57656904 -44216265 - L2 LINE L2 -38 3234 2832 1152 94 0 0 chr13 57657295 57657444 -44215725 - AluSg/x SINE Alu -13 299 151 411 73 0 0 chr13 57657457 57657512 -44215657 + (TA)n Simple_repeat Simple_repeat 1 55 0 2069 77 50 47 chr13 57657525 57657823 -44215346 + AluSq SINE Alu 1 299 -14 210 245 0 0 chr13 57658645 57658694 -44214475 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 2233 97 0 3 chr13 57658904 57659202 -44213967 + AluSq SINE Alu 1 297 -16 277 224 91 103 chr13 57659441 57659606 -44213563 - MIR SINE MIR -56 206 44 21 0 0 0 chr13 57660311 57660332 -44212837 + GC_rich Low_complexity Low_complexity 1 21 0 321 301 32 32 chr13 57662168 57662291 -44210878 - L2 LINE L2 -2 3270 3148 1342 186 55 4 chr13 57662294 57662569 -44210600 - MER58B DNA MER1_type -3 338 50 985 114 0 0 chr13 57662718 57662849 -44210320 - AluSq/x SINE Alu -180 133 3 1979 97 23 57 chr13 57663532 57663831 -44209338 + AluSx SINE Alu 1 289 -23 2210 107 0 7 chr13 57665149 57665468 -44207701 + AluSx SINE Alu 1 317 0 32 0 0 0 chr13 57665835 57665867 -44207302 + AT_rich Low_complexity Low_complexity 1 32 0 2477 84 45 0 chr13 57666609 57666967 -44206202 + L1PA13 LINE L1 5789 6162 -1 23 33 0 0 chr13 57666976 57667006 -44206163 + AT_rich Low_complexity Low_complexity 1 30 0 2309 92 3 0 chr13 57668370 57668665 -44204504 - AluSp SINE Alu -17 296 1 520 320 182 4 chr13 57669248 57669720 -44203449 - L1MC4a LINE L1 -1915 5893 5338 1915 176 58 19 chr13 57669943 57670353 -44202816 + MER63B DNA MER1_type 1 426 -10 572 294 109 9 chr13 57671529 57671740 -44201429 - MIR SINE MIR -21 241 10 403 333 42 18 chr13 57671750 57671918 -44201251 + MIR3 SINE MIR 25 196 -12 1147 250 76 3 chr13 57672176 57672464 -44200705 + LTR40a LTR ERVL 1 309 -210 1842 177 87 0 chr13 57672591 57672947 -44200222 + MER54A LTR ERVL 476 862 -39 1025 238 5 5 chr13 57672964 57673178 -44199991 + LTR40a LTR ERVL 306 519 0 653 166 179 13 chr13 57673182 57673333 -44199836 - MER3 DNA MER1_type -25 184 9 871 284 19 0 chr13 57673350 57673565 -44199604 - MER58A DNA MER1_type -4 220 2 553 250 23 30 chr13 57673565 57673697 -44199472 + MIR SINE MIR 30 160 -102 429 308 60 50 chr13 57673780 57674412 -44198757 - L1ME LINE L1 -387 5775 5106 211 293 120 33 chr13 57674503 57674653 -44198516 - L2 LINE L2 -208 3064 2902 300 243 171 29 chr13 57674697 57674837 -44198332 - L2 LINE L2 -477 2837 2678 3947 141 21 13 chr13 57675318 57675524 -44197645 + L1MA7 LINE L1 5587 5790 -501 405 0 0 0 chr13 57675524 57675569 -44197600 + (CA)n Simple_repeat Simple_repeat 2 46 0 3947 141 21 13 chr13 57675569 57676041 -44197128 + L1MA7 LINE L1 5790 6270 -21 1992 125 0 46 chr13 57676466 57676793 -44196376 - AluJb SINE Alu 0 312 1 1235 62 106 6 chr13 57678003 57678182 -44194987 - MER107 DNA MER1_type 0 197 1 22 0 0 0 chr13 57678420 57678442 -44194727 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr13 57679975 57680006 -44193163 + AT_rich Low_complexity Low_complexity 1 31 0 2209 110 3 0 chr13 57680298 57680589 -44192580 - AluSx SINE Alu -20 292 1 1198 214 12 12 chr13 57680845 57681088 -44192081 - MIR SINE MIR 0 262 20 395 302 105 12 chr13 57681114 57681286 -44191883 - MIR SINE MIR 0 262 75 285 29 0 0 chr13 57681482 57681516 -44191653 + (TC)n Simple_repeat Simple_repeat 2 35 0 260 301 42 28 chr13 57681657 57681800 -44191369 - L3 LINE CR1 -145 1432 1288 721 262 199 21 chr13 57681849 57682231 -44190938 - HAL1 LINE L1 -811 1696 1247 316 215 122 28 chr13 57682242 57682349 -44190820 - HAL1 LINE L1 -1301 1206 1090 259 220 0 34 chr13 57682714 57682773 -44190396 + L2 LINE L2 3244 3300 -13 283 324 218 16 chr13 57682798 57683184 -44189985 - L2 LINE L2 -1121 2193 1730 868 69 86 0 chr13 57683238 57683354 -44189815 + MER85 DNA T2_type 1 126 -13 25 0 0 0 chr13 57683421 57683446 -44189723 + AT_rich Low_complexity Low_complexity 1 25 0 209 250 59 140 chr13 57683471 57683607 -44189562 - MIR SINE MIR -33 229 105 301 287 159 41 chr13 57683711 57683906 -44189263 + MIR SINE MIR 8 225 -37 4619 92 61 4 chr13 57683907 57684633 -44188536 + L1MA5 LINE L1 5532 6298 -2 316 281 214 17 chr13 57685712 57685890 -44187279 + MIR SINE MIR 40 252 -10 761 140 7 35 chr13 57686905 57687048 -44186121 - FLAM_C SINE Alu -4 139 1 1053 162 12 0 chr13 57687058 57687231 -44185938 - FRAM SINE Alu -2 174 1 1670 176 7 11 chr13 57687459 57687743 -44185426 - AluJb SINE Alu -2 310 28 24 53 0 0 chr13 57688164 57688202 -44184967 + AT_rich Low_complexity Low_complexity 1 38 0 1798 125 49 41 chr13 57689306 57689673 -44183496 + THE1C LTR MaLR 1 370 -5 316 283 57 0 chr13 57689677 57689783 -44183386 + MIR SINE MIR 118 229 -33 1195 101 30 0 chr13 57690002 57690170 -44182999 - AluSg/x SINE Alu -6 304 132 2238 125 0 3 chr13 57690170 57690483 -44182686 - AluSq SINE Alu -1 312 1 3131 138 72 19 chr13 57690561 57691127 -44182042 + MER7C DNA MER2_type 6 601 -1 717 211 113 31 chr13 57691127 57691308 -44181861 + MER58B DNA MER1_type 144 340 -1 180 333 0 0 chr13 57691505 57691544 -44181625 + L2 LINE L2 3140 3178 -94 21 36 0 0 chr13 57691707 57691735 -44181434 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chr13 57694311 57694356 -44178813 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr13 57695578 57695609 -44177560 + AT_rich Low_complexity Low_complexity 1 31 0 1898 129 6 38 chr13 57695766 57696084 -44177085 + AluJb SINE Alu 1 308 -4 2013 136 0 10 chr13 57696622 57696924 -44176245 + AluSx SINE Alu 1 299 -13 343 297 125 0 chr13 57697214 57697342 -44175827 - MIR SINE MIR -117 145 2 637 249 25 55 chr13 57697934 57698135 -44175034 - MIR SINE MIR -67 195 1 1184 175 120 5 chr13 57698163 57698380 -44174789 - MER1B DNA MER1_type -7 332 131 1012 149 6 0 chr13 57700354 57700515 -44172654 + MER3 DNA MER1_type 2 163 -46 237 337 139 0 chr13 57700775 57700876 -44172293 + MIR3 SINE MIR 58 172 -36 1964 122 29 7 chr13 57701123 57701402 -44171767 + AluSx SINE Alu 1 285 -27 250 263 12 0 chr13 57703496 57703576 -44169593 + (TA)n Simple_repeat Simple_repeat 2 82 0 1705 166 39 0 chr13 57705946 57706229 -44166940 + AluSx SINE Alu 1 294 -18 333 331 44 33 chr13 57708323 57708542 -44164627 + MIR SINE MIR 34 248 -14 631 235 98 6 chr13 57708997 57709180 -44163989 + MER3 DNA MER1_type 1 200 -9 290 227 38 114 chr13 57709364 57709496 -44163673 - MIR SINE MIR -29 233 112 1445 184 4 22 chr13 57710353 57710620 -44162549 - AluJo SINE Alu -28 284 23 25 65 0 0 chr13 57711805 57711851 -44161318 + AT_rich Low_complexity Low_complexity 1 46 0 1886 167 10 0 chr13 57711879 57712173 -44160996 - AluSx SINE Alu -15 297 1 599 200 169 46 chr13 57712445 57712503 -44160666 + MER20 DNA MER1_type 1 50 -169 225 0 0 0 chr13 57712503 57712528 -44160641 + (TGG)n Simple_repeat Simple_repeat 3 27 0 599 200 169 46 chr13 57712528 57712664 -44160505 + MER20 DNA MER1_type 50 219 0 2175 128 0 3 chr13 57712801 57713106 -44160063 + AluSg SINE Alu 1 304 -6 8765 171 19 1 chr13 57715815 57717423 -44155746 + L1P LINE L1 3308 4943 -1203 2357 79 3 0 chr13 57717523 57717827 -44155342 + AluY SINE Alu 7 311 0 795 232 12 2 chr13 57717888 57718068 -44155101 - MER5A DNA MER1_type 0 178 3 593 311 82 0 chr13 57718293 57718476 -44154693 + MIR SINE MIR 47 244 -18 403 229 47 73 chr13 57718858 57719050 -44154119 + L1MC4a LINE L1 5768 5954 -1854 382 280 34 8 chr13 57719435 57719553 -44153616 + MIR SINE MIR 130 250 -12 184 264 138 11 chr13 57719766 57719853 -44153316 + MIR3 SINE MIR 10 107 -101 571 215 169 46 chr13 57720575 57720633 -44152536 + MER20 DNA MER1_type 1 50 -169 225 0 0 0 chr13 57720633 57720658 -44152511 + (TGG)n Simple_repeat Simple_repeat 3 27 0 571 215 169 46 chr13 57720658 57720794 -44152375 + MER20 DNA MER1_type 50 219 0 2426 97 0 0 chr13 57720931 57721239 -44151930 + AluSg SINE Alu 1 308 -2 240 225 70 28 chr13 57721508 57721579 -44151590 + MIR SINE MIR 33 106 -102 330 45 0 0 chr13 57723761 57723805 -44149364 + (TG)n Simple_repeat Simple_repeat 2 45 0 1552 148 35 67 chr13 57724752 57725096 -44148073 + L1MA8 LINE L1 5949 6281 -10 1450 119 17 38 chr13 57725097 57725358 -44147811 + AluSx SINE Alu 58 313 0 1540 174 14 10 chr13 57725362 57725650 -44147519 + AluSx SINE Alu 1 289 -23 1060 150 12 0 chr13 57725751 57725924 -44147245 - AluSg/x SINE Alu -3 309 135 815 154 28 7 chr13 57725924 57726067 -44147102 - MLT1A1 LTR MaLR -203 162 17 507 268 144 0 chr13 57726117 57726311 -44146858 + L2 LINE L2 3090 3311 -2 340 258 75 33 chr13 57726316 57726436 -44146733 - MIR SINE MIR -117 145 21 309 267 318 6 chr13 57726862 57727038 -44146131 + MIR SINE MIR 32 262 0 328 321 100 48 chr13 57727310 57727621 -44145548 - L1ME3A LINE L1 -226 5944 5618 597 259 54 0 chr13 57727765 57727931 -44145238 - MER104 DNA Tc2 0 180 6 26 0 0 0 chr13 57727932 57727958 -44145211 + AT_rich Low_complexity Low_complexity 1 26 0 227 170 0 43 chr13 57727960 57728007 -44145162 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 212 264 0 47 chr13 57728064 57728193 -44144976 + (TTTA)n Simple_repeat Simple_repeat 4 126 0 1936 131 30 13 chr13 57728539 57728837 -44144332 - AluSx SINE Alu -9 303 1 473 293 110 16 chr13 57728992 57729183 -44143986 + L3 LINE CR1 1329 1537 -40 450 319 74 63 chr13 57729243 57729610 -44143559 - MLT1J LTR MaLR -30 481 111 1825 145 4 7 chr13 57730084 57730360 -44142809 - AluJo SINE Alu -26 286 12 1147 191 35 9 chr13 57730558 57730788 -44142381 - MER46A DNA MER2_type 0 236 1 202 215 65 65 chr13 57731008 57731101 -44142068 - L2 LINE L2 -532 2782 2690 460 294 261 29 chr13 57731126 57731307 -44141862 - L2 LINE L2 -831 2483 2345 387 0 0 0 chr13 57731307 57731350 -44141819 + (CA)n Simple_repeat Simple_repeat 1 43 0 460 294 261 29 chr13 57731350 57731396 -44141773 - L2 LINE L2 -969 2345 2311 501 17 0 0 chr13 57731396 57731454 -44141715 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 460 294 261 29 chr13 57731454 57731879 -44141290 - L2 LINE L2 -1003 2311 1611 2171 100 0 0 chr13 57731923 57732239 -44140930 - AluY SINE Alu 0 316 1 181 411 64 28 chr13 57732255 57732396 -44140773 - L2 LINE L2 -262 3010 2865 2174 109 0 3 chr13 57732523 57732817 -44140352 - AluSx SINE Alu -17 295 3 887 193 44 6 chr13 57733866 57734047 -44139122 - MER5A DNA MER1_type -1 188 1 2080 249 196 18 chr13 57734146 57734948 -44138221 - L2 LINE L2 -737 2577 1633 2785 89 3 0 chr13 57734951 57735312 -44137857 + THE1B LTR MaLR 1 362 -2 24 53 0 0 chr13 57735566 57735604 -44137565 + AT_rich Low_complexity Low_complexity 1 38 0 543 243 71 12 chr13 57736295 57736464 -44136705 + L1MD2 LINE L1 5928 6106 -253 663 188 14 0 chr13 57736487 57736625 -44136544 - Charlie1 DNA MER1_type 0 2761 2622 * 976 183 30 68 chr13 57736622 57736857 -44136312 - Charlie1 DNA MER1_type -2535 226 1 319 299 34 41 chr13 57736892 57737039 -44136130 + MIR SINE MIR 117 262 0 871 298 90 49 chr13 57737731 57738214 -44134955 - L2 LINE L2 -9 3304 2794 334 246 100 18 chr13 57738977 57739087 -44134082 - MER94 DNA DNA 0 134 16 272 213 125 25 chr13 57739467 57739547 -44133622 - L2 LINE L2 -38 3275 3188 235 253 228 0 chr13 57739571 57739650 -44133519 + MIR SINE MIR 58 154 -108 28 29 0 0 chr13 57739779 57739814 -44133355 + AT_rich Low_complexity Low_complexity 1 35 0 1881 162 0 0 chr13 57740526 57740822 -44132347 - AluSx SINE Alu -16 296 1 777 271 51 90 chr13 57741096 57741717 -44131452 - L2 LINE L2 -4 3309 2705 4109 125 47 9 chr13 57741718 57742381 -44130788 + Tigger2 DNA MER2_type 1 688 -2030 1200 126 92 21 chr13 57742466 57742704 -44130465 + Tigger2 DNA MER2_type 2461 2715 -3 180 206 0 0 chr13 57742724 57742758 -44130411 + L2 LINE L2 3265 3298 -15 2766 253 118 15 chr13 57742839 57743726 -44129443 - L2 LINE L2 -638 2676 1698 210 158 0 0 chr13 57743728 57743766 -44129403 + T-rich Low_complexity Low_complexity 1 38 0 1284 169 96 73 chr13 57744679 57745022 -44128147 - MER39 LTR ERV1 0 707 357 483 227 153 88 chr13 57745043 57745259 -44127910 - MER39 LTR ERV1 -477 230 1 1131 141 0 0 chr13 57745464 57745627 -44127542 - AluSq SINE Alu -17 296 134 2366 90 0 0 chr13 57745627 57745928 -44127241 - AluY SINE Alu -10 301 1 1768 194 56 24 chr13 57746558 57746861 -44126308 - L1MB2 LINE L1 -23 6148 5827 4330 64 20 26 chr13 57746861 57747473 -44125696 - L1PA7 LINE L1 -1 6153 5546 1768 194 56 24 chr13 57747473 57747582 -44125587 - L1MB2 LINE L1 -344 5827 5723 209 219 0 47 chr13 57747652 57747716 -44125453 + A-rich Low_complexity Low_complexity 2 62 0 2089 147 0 0 chr13 57747779 57748072 -44125097 + AluSx SINE Alu 1 293 -19 497 248 65 2 chr13 57748489 57748672 -44124497 - L1ME3A LINE L1 -340 5830 5625 * 1479 260 47 48 chr13 57748669 57749246 -44123923 - L1ME LINE L1 -5195 875 300 207 0 0 0 chr13 57749619 57749642 -44123527 + (T)n Simple_repeat Simple_repeat 1 23 0 2224 110 10 7 chr13 57750065 57750375 -44122794 - AluSx SINE Alu -1 311 1 210 282 73 89 chr13 57751276 57751344 -44121825 - MER5A DNA MER1_type -48 141 74 2301 89 0 13 chr13 57751344 57751646 -44121523 - AluY SINE Alu -13 298 1 210 282 73 89 chr13 57751646 57751701 -44121468 - MER5A DNA MER1_type -115 74 20 1915 151 23 0 chr13 57751807 57752106 -44121063 + AluSx SINE Alu 1 306 -6 199 250 42 56 chr13 57752618 57752690 -44120479 - L3 LINE CR1 -1108 469 399 828 145 0 0 chr13 57752938 57753069 -44120100 + AluJo/FLAM SINE Alu 3 133 -169 1343 134 40 22 chr13 57753071 57753295 -44119874 + AluSg/x SINE Alu 83 310 0 724 159 106 71 chr13 57753296 57753466 -44119703 + AluSc SINE Alu 132 307 -2 442 287 193 25 chr13 57753874 57754259 -44118910 - MLT1G LTR MaLR 0 555 91 2332 94 7 0 chr13 57754642 57754939 -44118230 + AluSx SINE Alu 1 299 -13 39 38 0 0 chr13 57754944 57754997 -44118172 + AT_rich Low_complexity Low_complexity 1 53 0 233 222 45 74 chr13 57755120 57755296 -44117873 + L1M4 LINE L1 2931 3101 -3045 269 308 20 27 chr13 57755600 57755746 -44117423 + L1M4 LINE L1 3670 3814 -2332 832 200 0 0 chr13 57756171 57756311 -44116858 - FRAM SINE Alu -31 145 6 1671 144 13 70 chr13 57756848 57757161 -44116008 + AluJb SINE Alu 2 296 -16 198 359 0 0 chr13 57757984 57758048 -44115121 - L2 LINE L2 -9 3263 3200 206 167 30 30 chr13 57758540 57758606 -44114563 + (TA)n Simple_repeat Simple_repeat 2 67 0 456 377 131 18 chr13 57758726 57759551 -44113618 + L2 LINE L2 555 1472 -1842 317 331 114 42 chr13 57759764 57760027 -44113142 + L2 LINE L2 1512 1793 -1521 267 241 214 32 chr13 57760012 57760134 -44113035 + MIR SINE MIR 17 150 -61 * 381 309 261 5 chr13 57760570 57760777 -44112392 - MIR SINE MIR 0 262 3 211 355 21 11 chr13 57761102 57761195 -44111974 + L2 LINE L2 3174 3267 -5 380 298 112 19 chr13 57761391 57761552 -44111617 - L2 LINE L2 -20 3293 3118 277 283 242 0 chr13 57761938 57762037 -44111132 + L2 LINE L2 3141 3263 -9 206 211 0 0 chr13 57762493 57762531 -44110638 - MER5A DNA MER1_type -1 188 151 222 292 55 0 chr13 57762953 57763034 -44110135 + MIR SINE MIR 67 143 -65 215 286 204 0 chr13 57763102 57763200 -44109969 + L2 LINE L2 3196 3313 0 987 172 6 12 chr13 57763438 57763601 -44109568 + FRAM SINE Alu 4 165 -1 377 239 34 0 chr13 57763761 57763849 -44109320 + L1MC5 LINE L1 7811 7901 -60 243 263 26 0 chr13 57764136 57764212 -44108957 + L1ME LINE L1 5742 5819 -351 586 175 113 98 chr13 57764254 57764448 -44108721 - L1MC4 LINE L1 -1135 6907 6711 2032 118 10 20 chr13 57764507 57764803 -44108366 - AluSx SINE Alu -19 293 1 449 248 15 15 chr13 57764836 57764973 -44108196 + L1MC4 LINE L1 6944 7080 -962 309 140 0 0 chr13 57764998 57765048 -44108121 - L1MB2 LINE L1 -39 6132 6083 1934 214 55 95 chr13 57765053 57765856 -44107313 + L1MC4 LINE L1 7099 7869 -173 864 209 105 38 chr13 57765922 57766132 -44107037 - MER8 DNA MER2_type -4 235 12 968 181 24 39 chr13 57766286 57766491 -44106678 + AluJo SINE Alu 17 218 -94 276 137 0 20 chr13 57766491 57766542 -44106627 + FAM SINE Alu 125 174 -1 39 50 0 0 chr13 57766583 57766643 -44106526 + AT_rich Low_complexity Low_complexity 1 60 0 2311 113 0 3 chr13 57767725 57768035 -44105134 - AluSx SINE Alu -3 309 1 243 0 0 0 chr13 57768532 57768559 -44104610 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 31076 99 14 13 chr13 57768762 57774371 -44098798 - L1PA7 LINE L1 0 6469 779 1552 172 40 30 chr13 57774830 57775126 -44098043 + AluJo SINE Alu 2 300 -12 2430 79 0 0 chr13 57776304 57776608 -44096561 + AluY SINE Alu 1 304 -7 22 35 0 0 chr13 57777700 57777729 -44095440 + AT_rich Low_complexity Low_complexity 1 29 0 294 247 63 29 chr13 57778213 57778387 -44094782 - L1ME2 LINE L1 -204 5960 5781 724 331 139 48 chr13 57778627 57778891 -44094278 - L2 LINE L2 0 3272 3033 2716 124 38 2 chr13 57778891 57779310 -44093859 - MER57B LTR ERV1 0 434 1 724 331 139 48 chr13 57779310 57780019 -44093150 - L2 LINE L2 -239 3033 2209 2310 86 7 7 chr13 57781011 57781312 -44091857 - AluSx SINE Alu -11 301 1 461 268 57 67 chr13 57781840 57781975 -44091194 + MIR SINE MIR 7 139 -123 1667 166 14 17 chr13 57781975 57782264 -44090905 + AluJb SINE Alu 1 288 -24 461 268 57 67 chr13 57782264 57782332 -44090837 + MIR SINE MIR 139 206 -56 26 0 0 0 chr13 57783332 57783358 -44089811 + AT_rich Low_complexity Low_complexity 1 26 0 316 336 68 7 chr13 57783592 57783738 -44089431 - L2 LINE L2 -557 2757 2603 2195 111 0 0 chr13 57783910 57784198 -44088971 - AluSq SINE Alu -25 288 1 327 309 73 22 chr13 57784517 57784653 -44088516 - MIR SINE MIR -4 258 116 2292 45 7 3 chr13 57784829 57785116 -44088053 - L1PA7 LINE L1 -3 6151 5864 648 0 0 0 chr13 57785215 57785287 -44087882 + (CA)n Simple_repeat Simple_repeat 2 73 0 678 153 0 51 chr13 57785288 57785406 -44087763 - FLAM_C SINE Alu -19 114 3 225 0 0 0 chr13 57785456 57785481 -44087688 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 5504 83 22 37 chr13 57785481 57786312 -44086857 - L1PA8 LINE L1 -24 6148 5331 1516 255 310 23 chr13 57786315 57787193 -44085976 + L2 LINE L2 1847 2976 -338 562 228 94 35 chr13 57787219 57787421 -44085748 + L2 LINE L2 3100 3313 0 1106 192 177 84 chr13 57787764 57788098 -44085071 - MSTD LTR MaLR 0 396 1 194 33 67 0 chr13 57788592 57788622 -44084547 + T-rich Low_complexity Low_complexity 2 33 0 2354 45 45 0 chr13 57789050 57789336 -44083833 + AluY SINE Alu 1 299 -12 493 292 0 0 chr13 57789376 57789506 -44083663 - MER94 DNA DNA -4 130 1 1039 255 9 9 chr13 57790228 57790459 -44082710 + MIR SINE MIR 8 238 -24 184 243 0 0 chr13 57790765 57790802 -44082367 + L2 LINE L2 2996 3032 -240 7306 179 129 27 chr13 57791545 57793138 -44080031 + MER52A LTR ERV1 1 1755 0 21 0 0 0 chr13 57793271 57793292 -44079877 + AT_rich Low_complexity Low_complexity 1 21 0 407 301 116 6 chr13 57793314 57793487 -44079682 + MIR SINE MIR 1 192 -70 365 335 84 48 chr13 57793775 57794133 -44079036 + L2 LINE L2 700 1070 -2244 332 289 33 16 chr13 57794184 57794305 -44078864 + MIR SINE MIR 92 214 -48 223 75 0 57 chr13 57794761 57794814 -44078355 + (CATTT)n Simple_repeat Simple_repeat 3 52 0 1260 176 226 24 chr13 57794876 57795301 -44077868 - L1ME2 LINE L1 -111 6053 5543 239 197 182 0 chr13 57795535 57795601 -44077568 - L1MD3 LINE L1 -10 7985 7908 1727 145 8 0 chr13 57795888 57796143 -44077026 + AluSx SINE Alu 34 290 -22 248 174 0 0 chr13 57796647 57796693 -44076476 + MIR SINE MIR 179 224 -38 283 256 124 66 chr13 57797685 57797958 -44075211 + L1MC/D LINE L1 4945 5233 -913 2205 126 0 3 chr13 57798043 57798353 -44074816 + AluSq SINE Alu 1 309 -4 745 272 24 55 chr13 57798371 57798510 -44074659 + L1MC/D LINE L1 5467 5609 -2199 330 26 0 0 chr13 57798510 57798549 -44074620 + (TG)n Simple_repeat Simple_repeat 2 40 0 2066 124 0 0 chr13 57798555 57798838 -44074331 - AluSx SINE Alu -29 283 1 745 272 24 55 chr13 57798838 57798945 -44074224 + L1MC/D LINE L1 5614 5712 -2096 625 361 133 4 chr13 57799676 57800164 -44073005 + L3 LINE CR1 299 849 -728 277 330 214 22 chr13 57800398 57800665 -44072504 + L3 LINE CR1 1243 1560 -17 396 0 0 0 chr13 57800795 57800839 -44072330 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr13 57801613 57801634 -44071535 + AT_rich Low_complexity Low_complexity 1 21 0 928 145 0 0 chr13 57801642 57801773 -44071396 + AluJb SINE Alu 6 136 -176 1388 139 0 5 chr13 57802092 57802294 -44070875 - AluSx SINE Alu -53 259 59 266 298 94 38 chr13 57802483 57802802 -44070367 + HAL1b LINE L1 66 402 -946 552 240 16 8 chr13 57802811 57802936 -44070233 + FLAM_A SINE Alu 1 126 -7 266 336 102 15 chr13 57802980 57803117 -44070052 - L2 LINE L2 -1 3312 3164 361 299 117 11 chr13 57803205 57803469 -44069700 + HAL1b LINE L1 556 847 -501 21 36 0 0 chr13 57803575 57803603 -44069566 + AT_rich Low_complexity Low_complexity 1 28 0 2325 65 0 26 chr13 57803855 57804162 -44069007 + AluY SINE Alu 1 299 -12 189 171 0 0 chr13 57805022 57805057 -44068112 + (TG)n Simple_repeat Simple_repeat 2 36 0 252 231 33 44 chr13 57805675 57805766 -44067403 - MIR SINE MIR 0 262 173 360 366 21 14 chr13 57806124 57806266 -44066903 - MIR3 SINE MIR -64 144 2 1065 238 57 37 chr13 57806374 57806832 -44066337 - MLT1C LTR MaLR 0 467 1 2136 119 42 31 chr13 57807519 57807879 -44065290 + THE1B LTR MaLR 1 364 0 1442 206 3 26 chr13 57808504 57808814 -44064355 + AluJo SINE Alu 1 303 -9 724 167 0 36 chr13 57809188 57809326 -44063843 + FLAM_C SINE Alu 1 133 0 5707 58 0 0 chr13 57809398 57810116 -44063053 + L1PA3 LINE L1 5438 6155 0 28 0 0 0 chr13 57810116 57810144 -44063025 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr13 57810455 57810493 -44062676 + AT_rich Low_complexity Low_complexity 1 38 0 192 40 0 0 chr13 57811766 57811791 -44061378 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 2164 115 0 0 chr13 57811794 57812090 -44061079 - AluSg SINE Alu -14 296 1 643 237 162 22 chr13 57812475 57812703 -44060466 + MIR SINE MIR 2 261 -1 195 353 64 56 chr13 57812748 57812997 -44060172 - L2 LINE L2 -839 2475 2225 2820 221 60 60 chr13 57813184 57813888 -44059281 + L1ME1 LINE L1 4245 4948 -1218 1935 107 34 14 chr13 57813888 57814179 -44058990 - AluSq SINE Alu -16 297 1 2820 221 60 60 chr13 57814179 57815227 -44057942 + L1ME1 LINE L1 4948 6162 -4 9935 222 63 23 chr13 57815255 57818223 -44054946 - L1MC1 LINE L1 -13 6389 3250 2389 96 3 0 chr13 57818223 57818535 -44054634 - AluSp SINE Alu 0 313 1 9935 222 63 23 chr13 57818535 57819690 -44053479 - L1MC1 LINE L1 -3152 3250 2142 1621 196 31 15 chr13 57820176 57820503 -44052666 + MER58B DNA MER1_type 1 332 -9 537 256 217 0 chr13 57820940 57821120 -44052049 - MIR SINE MIR -21 241 23 263 95 119 0 chr13 57821288 57821330 -44051839 - L1PA16 LINE L1 -10 6156 6110 375 264 154 0 chr13 57821332 57821442 -44051727 + MIR SINE MIR 23 149 -113 734 212 0 0 chr13 57821447 57821584 -44051585 + L1MA3 LINE L1 4090 4226 -1920 643 165 0 0 chr13 57821604 57821701 -44051468 - U6 snRNA snRNA -10 97 1 6287 131 15 29 chr13 57821702 57821922 -44051247 + L1MA3 LINE L1 4214 4436 -1869 2260 112 0 0 chr13 57821922 57822225 -44050944 + AluSg SINE Alu 1 303 -7 6287 131 15 29 chr13 57822225 57823945 -44049224 + L1MA3 LINE L1 4436 6128 -177 1656 142 11 8 chr13 57824006 57824274 -44048895 - AluSx SINE Alu -43 269 1 681 133 124 0 chr13 57824300 57824413 -44048756 + AluSq/x SINE Alu 3 129 -184 231 114 0 0 chr13 57824414 57824449 -44048720 + (CATA)n Simple_repeat Simple_repeat 2 36 0 936 92 138 0 chr13 57824449 57824601 -44048568 + L1MA3 LINE L1 6131 6303 -2 22 35 0 0 chr13 57825213 57825242 -44047927 + AT_rich Low_complexity Low_complexity 1 29 0 250 364 50 10 chr13 57826013 57826112 -44047057 - L2 LINE L2 -21 3292 3190 319 337 11 11 chr13 57826175 57826270 -44046899 - MER5B DNA MER1_type -59 119 25 25 0 0 0 chr13 57827648 57827673 -44045496 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr13 57828103 57828143 -44045026 + AT_rich Low_complexity Low_complexity 1 40 0 398 313 137 14 chr13 57828369 57828647 -44044522 - MARNA DNA Mariner -41 545 234 427 256 100 85 chr13 57828823 57829365 -44043804 + L1ME4a LINE L1 5465 6014 -107 927 135 0 0 chr13 57829404 57829537 -44043632 + FLAM_C SINE Alu 1 133 -10 21 71 0 0 chr13 57829603 57829645 -44043524 + AT_rich Low_complexity Low_complexity 1 42 0 3367 172 69 0 chr13 57831998 57832677 -44040492 + L1MB7 LINE L1 5443 6168 -16 26 50 0 0 chr13 57832712 57832752 -44040417 + AT_rich Low_complexity Low_complexity 1 40 0 377 274 127 33 chr13 57833011 57833185 -44039984 + MIR SINE MIR 16 208 -54 239 316 134 69 chr13 57833255 57833272 -44039897 + L2 LINE L2 3027 3041 -231 318 50 0 0 chr13 57833272 57833312 -44039857 + (CA)n Simple_repeat Simple_repeat 2 41 0 239 316 134 69 chr13 57833312 57833525 -44039644 + L2 LINE L2 3041 3272 0 189 0 0 0 chr13 57834544 57834565 -44038604 + (A)n Simple_repeat Simple_repeat 1 21 0 258 257 18 9 chr13 57834624 57834733 -44038436 + L1M4 LINE L1 4360 4469 -1677 245 310 49 35 chr13 57835010 57835213 -44037956 + L1M4 LINE L1 4802 5007 -1139 216 48 71 0 chr13 57835216 57835258 -44037911 + (TA)n Simple_repeat Simple_repeat 1 45 0 306 0 0 0 chr13 57835258 57835292 -44037877 + (TG)n Simple_repeat Simple_repeat 2 35 0 1656 141 29 14 chr13 57835339 57835616 -44037553 + AluSx SINE Alu 12 292 -20 65 56 0 0 chr13 57835726 57835833 -44037336 + AT_rich Low_complexity Low_complexity 1 107 0 29 28 0 0 chr13 57836042 57836078 -44037091 + AT_rich Low_complexity Low_complexity 1 36 0 329 308 8 0 chr13 57836210 57836340 -44036829 + L1PB1 LINE L1 69 199 -6664 * 879 176 24 43 chr13 57836337 57836547 -44036622 + L1PB1 LINE L1 652 857 -6006 * 14423 197 28 14 chr13 57836539 57839039 -44034130 + L1PB1 LINE L1 1366 3830 -3037 2094 106 3 39 chr13 57839039 57839351 -44033818 + AluSp SINE Alu 1 301 -12 14423 197 28 14 chr13 57839351 57841225 -44031944 + L1PB1 LINE L1 3830 5677 -1190 2073 128 3 0 chr13 57841225 57841537 -44031632 + AluSp SINE Alu 1 313 0 14423 197 28 14 chr13 57841537 57841891 -44031278 + L1PB1 LINE L1 5677 6025 -842 2072 109 14 0 chr13 57841891 57842185 -44030984 + AluSq SINE Alu 1 298 -15 14423 197 28 14 chr13 57842185 57842478 -44030691 + L1PB1 LINE L1 6025 6312 -555 207 100 0 0 chr13 57842478 57842508 -44030661 + (TG)n Simple_repeat Simple_repeat 2 31 0 14423 197 28 14 chr13 57842508 57842870 -44030299 + L1PB1 LINE L1 6312 6859 -8 499 248 110 50 chr13 57843045 57843386 -44029783 + L1ME4a LINE L1 5619 5989 -132 1996 118 7 10 chr13 57843386 57843683 -44029486 - AluSx SINE Alu -16 296 1 499 248 110 50 chr13 57843683 57843741 -44029428 + L1ME4a LINE L1 5989 6042 -79 857 214 30 10 chr13 57843943 57844144 -44029025 + MER3 DNA MER1_type 1 205 -4 857 214 30 10 chr13 57844817 57845018 -44028151 + MER3 DNA MER1_type 1 205 -4 198 208 143 91 chr13 57845211 57845288 -44027881 + MIR SINE MIR 98 178 -84 2157 139 0 0 chr13 57845788 57846098 -44027071 - AluSx SINE Alu -1 311 2 236 309 43 75 chr13 57846331 57846425 -44026744 - MIR SINE MIR -148 114 24 2030 131 0 13 chr13 57846425 57846723 -44026446 - AluSg SINE Alu -15 295 2 23 0 0 0 chr13 57846858 57846881 -44026288 + AT_rich Low_complexity Low_complexity 1 23 0 240 273 61 0 chr13 57847045 57847111 -44026058 + MER112 DNA MER1_type 184 253 -7 417 333 50 0 chr13 57847272 57847392 -44025777 + L2 LINE L2 3144 3269 -3 441 246 262 11 chr13 57848867 57849054 -44024115 - MIR SINE MIR -28 234 1 1795 148 30 13 chr13 57850128 57850431 -44022738 + AluSq SINE Alu 4 311 -2 694 99 10 0 chr13 57850657 57850758 -44022411 - AluS SINE Alu -211 102 1 21 0 0 0 chr13 57850887 57850908 -44022261 + AT_rich Low_complexity Low_complexity 1 21 0 233 277 141 76 chr13 57851171 57851355 -44021814 + L2 LINE L2 2665 2860 -454 2189 247 199 20 chr13 57851423 57851998 -44021171 + L1ME2 LINE L1 3957 4428 -1718 877 213 0 0 chr13 57851998 57852172 -44020997 + FAM SINE Alu 1 174 -1 2189 247 199 20 chr13 57852172 57852709 -44020460 + L1ME2 LINE L1 4428 5268 -878 773 181 31 0 chr13 57852815 57852942 -44020227 + FLAM_C SINE Alu 2 132 -1 354 136 37 12 chr13 57852946 57853027 -44020142 + GA-rich Low_complexity Low_complexity 2 84 0 242 139 0 0 chr13 57853030 57853066 -44020103 + MLT1E2 LTR MaLR 24 59 -567 * 816 216 25 20 chr13 57853058 57853257 -44019912 + MLT1D LTR MaLR 303 502 -3 1268 256 150 15 chr13 57853260 57853799 -44019370 + L1ME2 LINE L1 5261 5872 -298 287 143 57 71 chr13 57853807 57853947 -44019222 + (TTATA)n Simple_repeat Simple_repeat 2 139 0 288 148 98 0 chr13 57853948 57854009 -44019160 + L1ME2 LINE L1 5904 5970 -194 28 0 0 0 chr13 57854020 57854048 -44019121 + AT_rich Low_complexity Low_complexity 1 28 0 387 184 27 162 chr13 57854048 57854233 -44018936 + L1ME2 LINE L1 5960 6119 -45 1553 161 61 4 chr13 57854462 57854742 -44018427 + AluJo SINE Alu 1 296 -16 1788 158 18 4 chr13 57855568 57855846 -44017323 - AluJo SINE Alu -30 282 1 717 225 151 31 chr13 57855906 57856164 -44017005 - MER2 DNA MER2_type 0 345 57 2234 89 0 10 chr13 57857073 57857365 -44015804 + AluSq SINE Alu 1 289 -24 26 0 0 0 chr13 57857365 57857391 -44015778 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 57858141 57858163 -44015006 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 57858294 57858315 -44014854 + AT_rich Low_complexity Low_complexity 1 21 0 1853 154 35 38 chr13 57858629 57858974 -44014195 - MER2 DNA MER2_type 0 344 1 2135 123 0 23 chr13 57859350 57859658 -44013511 - AluSx SINE Alu -9 303 3 2282 103 3 0 chr13 57859673 57859965 -44013204 - AluSx SINE Alu -14 298 6 1763 177 3 22 chr13 57860652 57860968 -44012201 + AluJb SINE Alu 1 310 -2 244 235 29 29 chr13 57861362 57861430 -44011739 - L2 LINE L2 -1 3312 3245 1016 188 0 6 chr13 57861607 57861783 -44011386 + FAM SINE Alu 1 175 0 1965 129 3 46 chr13 57862054 57862379 -44010790 - AluSx SINE Alu -1 311 1 225 315 42 7 chr13 57862442 57862585 -44010584 - L1ME4a LINE L1 -166 5955 5808 1441 178 50 29 chr13 57862963 57863244 -44009925 - AluJo SINE Alu -15 287 1 2086 127 3 0 chr13 57864649 57864940 -44008229 + AluSq SINE Alu 1 292 -21 1347 207 25 7 chr13 57865418 57865698 -44007471 + AluJb SINE Alu 13 297 -15 393 286 99 11 chr13 57866128 57866310 -44006859 + L1MB7 LINE L1 5322 5519 -2289 233 245 0 0 chr13 57866328 57866377 -44006792 - L2 LINE L2 0 3272 3224 380 236 9 0 chr13 57866377 57866487 -44006682 - L1ME4a LINE L1 -848 5298 5188 2458 67 17 0 chr13 57866509 57866808 -44006361 - AluSq SINE Alu -9 304 1 902 203 38 4 chr13 57866847 57867083 -44006086 - L1ME4a LINE L1 -944 5202 4959 528 96 0 12 chr13 57867083 57867166 -44006003 + Charlie5 DNA MER1_type 2504 2585 -27 389 196 46 98 chr13 57867174 57867368 -44005801 - Charlie7 DNA MER1_type 0 2612 2429 217 348 235 10 chr13 57867429 57867633 -44005536 + L2 LINE L2 2602 2851 -463 1498 133 0 94 chr13 57868026 57868192 -44004977 - AluSx SINE Alu -10 302 173 939 331 9 114 chr13 57868192 57868524 -44004645 + AluSc SINE Alu 3 299 0 1498 133 0 94 chr13 57868524 57868643 -44004526 - AluSx SINE Alu -139 173 44 804 115 0 0 chr13 57868934 57869056 -44004113 + (TA)n Simple_repeat Simple_repeat 2 123 0 2283 99 0 0 chr13 57869444 57869738 -44003431 - AluSq SINE Alu -18 295 2 852 237 11 0 chr13 57870471 57870661 -44002508 + L1MB7 LINE L1 5982 6173 -11 1843 150 7 3 chr13 57870872 57871159 -44002010 - AluJo SINE Alu -24 288 1 240 35 0 0 chr13 57872718 57872747 -44000422 + (TA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr13 57872867 57872889 -44000280 + AT_rich Low_complexity Low_complexity 1 22 0 1827 170 6 10 chr13 57872930 57873242 -43999927 - AluJb SINE Alu -1 311 1 1468 215 50 24 chr13 57873488 57873865 -43999304 + MER63B DNA MER1_type 1 387 -49 764 144 89 0 chr13 57873878 57874024 -43999145 - L1ME1 LINE L1 -339 5827 5669 27 49 0 0 chr13 57874163 57874204 -43998965 + AT_rich Low_complexity Low_complexity 1 41 0 608 195 41 16 chr13 57874254 57874377 -43998792 + AluJo/FLAM SINE Alu 1 126 -176 2165 126 0 3 chr13 57874379 57874680 -43998489 + AluSx SINE Alu 1 300 -12 364 271 43 43 chr13 57874821 57875009 -43998160 + L1MC5 LINE L1 7720 7907 -54 1536 118 4 4 chr13 57875286 57875515 -43997654 - AluSg/x SINE Alu 0 310 82 3316 214 81 50 chr13 57875726 57875981 -43997188 - L1ME1 LINE L1 -5 6230 5984 2079 125 0 0 chr13 57875981 57876269 -43996900 - AluSg SINE Alu -8 302 15 3316 214 81 50 chr13 57876269 57877008 -43996161 - L1ME1 LINE L1 -251 5984 5269 266 0 29 0 chr13 57877008 57877042 -43996127 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1663 145 14 41 chr13 57877045 57877335 -43995834 - AluJo SINE Alu -30 282 1 3316 214 81 50 chr13 57877335 57877988 -43995181 - L1ME1 LINE L1 -967 5268 4516 1823 211 56 50 chr13 57878082 57878537 -43994632 - L1ME1 LINE L1 -4073 2323 1861 2104 114 21 0 chr13 57878537 57878827 -43994342 + AluSq SINE Alu 1 296 -17 1823 211 56 50 chr13 57878827 57879064 -43994105 - L1ME1 LINE L1 -4535 1861 1627 3975 191 54 17 chr13 57879180 57880186 -43992983 - L1MB5 LINE L1 0 6174 5134 2811 180 22 9 chr13 57880227 57880766 -43992403 - L1MB5 LINE L1 -8 6166 5621 3419 270 80 26 chr13 57880769 57882222 -43990947 - L1ME1 LINE L1 -4759 1637 107 403 191 78 57 chr13 57883284 57883425 -43989744 - HsTC2 DNA Tc2 -41 1857 1714 512 218 157 0 chr13 57883432 57883579 -43989590 - HsTC2 DNA Tc2 -1583 315 146 2095 142 0 0 chr13 57883718 57884013 -43989156 + AluSx SINE Alu 1 295 -17 1592 141 70 6 chr13 57884175 57884487 -43988682 + L1MA4 LINE L1 5963 6294 -6 434 283 67 28 chr13 57884833 57885013 -43988156 + MIR SINE MIR 76 262 0 2153 114 7 10 chr13 57885164 57885471 -43987698 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr13 57885518 57885541 -43987628 + AT_rich Low_complexity Low_complexity 1 23 0 338 66 16 33 chr13 57885702 57885763 -43987406 - L1PA16 LINE L1 -3 6163 6104 1199 126 0 0 chr13 57885777 57885944 -43987225 - AluSg/x SINE Alu -23 287 121 4260 142 39 0 chr13 57885947 57886643 -43986526 - L1PA16 LINE L1 -58 6108 5386 2582 97 16 8 chr13 57887061 57887433 -43985736 - THE1C LTR MaLR 0 375 1 10094 119 23 26 chr13 57887433 57888638 -43984531 - THE1C-int LTR MaLR 0 1580 380 4689 55 18 3 chr13 57888638 57889239 -43983930 + L1PA7 LINE L1 5545 6154 0 10094 119 23 26 chr13 57889239 57889618 -43983551 - THE1C-int LTR MaLR -1200 380 1 2378 121 21 13 chr13 57889618 57889990 -43983179 - THE1C LTR MaLR 0 375 1 2475 80 0 3 chr13 57890303 57890616 -43982553 - AluSx SINE Alu 0 312 1 434 299 30 12 chr13 57890620 57890787 -43982382 + MER112 DNA MER1_type 2 171 -89 621 233 52 38 chr13 57891672 57891882 -43981287 - L2 LINE L2 0 3313 3101 614 227 17 0 chr13 57892296 57892415 -43980754 + MIR SINE MIR 22 142 -120 609 160 38 0 chr13 57892560 57892666 -43980503 + L1MC1 LINE L1 5883 5992 -341 653 129 0 10 chr13 57892683 57892784 -43980385 - L1MC1 LINE L1 -217 6116 6017 1119 155 61 42 chr13 57892784 57892997 -43980172 - AluSx SINE Alu -95 217 1 2059 130 0 58 chr13 57893023 57893353 -43979816 - AluSx SINE Alu -1 311 1 3372 165 33 39 chr13 57893357 57894233 -43978936 - L1PBb LINE L1 -5000 1863 992 3301 291 47 30 chr13 57894228 57895900 -43977269 - L1PBa LINE L1 -5220 1643 6 * 324 48 0 0 chr13 57896363 57896405 -43976764 + (TG)n Simple_repeat Simple_repeat 1 42 0 219 69 0 0 chr13 57896600 57896629 -43976540 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr13 57897334 57897359 -43975810 + (TG)n Simple_repeat Simple_repeat 1 25 0 281 310 149 16 chr13 57897487 57897742 -43975427 + L2 LINE L2 1882 2170 -1144 6056 75 19 7 chr13 57897822 57898671 -43974498 + L1PB1 LINE L1 5293 6151 0 1368 166 14 81 chr13 57898685 57898981 -43974188 + AluJb SINE Alu 26 301 -11 678 228 26 146 chr13 57898987 57899329 -43973840 + AluJo SINE Alu 2 302 0 213 184 20 20 chr13 57899902 57899951 -43973218 - MER5A DNA MER1_type -56 133 85 2121 124 10 10 chr13 57899988 57900295 -43972874 - AluSx SINE Alu -5 307 1 1013 141 37 18 chr13 57901248 57901411 -43971758 + AluJb SINE Alu 124 289 -23 215 250 0 0 chr13 57902006 57902058 -43971111 + T-rich Low_complexity Low_complexity 1 52 0 213 348 25 17 chr13 57902164 57902282 -43970887 + L2 LINE L2 965 1083 -2231 3511 187 59 23 chr13 57903227 57903348 -43969821 + L1MB4 LINE L1 4314 4429 -1751 1680 148 7 11 chr13 57903348 57903618 -43969551 + AluJo SINE Alu 36 304 -8 3511 187 59 23 chr13 57903618 57904311 -43968858 + L1MB4 LINE L1 4429 5096 -1084 2193 109 0 0 chr13 57904311 57904594 -43968575 + AluSx SINE Alu 1 283 -29 180 111 0 0 chr13 57904594 57904621 -43968548 + (TAAG)n Simple_repeat Simple_repeat 2 28 0 3511 187 59 23 chr13 57904621 57905495 -43967674 + L1MB4 LINE L1 5095 6159 -21 26 0 0 0 chr13 57905753 57905779 -43967390 + AT_rich Low_complexity Low_complexity 1 26 0 2276 90 10 0 chr13 57905780 57906081 -43967088 + AluSx SINE Alu 1 304 -8 23 24 0 24 chr13 57907607 57907626 -43965543 + AT_rich Low_complexity Low_complexity 1 19 -21 2176 121 0 0 chr13 57907626 57907915 -43965254 + AluSx SINE Alu 1 289 -23 23 24 0 24 chr13 57907915 57907936 -43965233 + AT_rich Low_complexity Low_complexity 19 40 0 2229 113 7 0 chr13 57907941 57908233 -43964936 - AluSg SINE Alu -16 294 1 375 319 21 28 chr13 57908429 57908570 -43964599 - MIR SINE MIR -121 141 2 305 248 16 78 chr13 57908615 57908744 -43964425 + L1MC5 LINE L1 7772 7892 -69 23 33 0 0 chr13 57908745 57908775 -43964394 + AT_rich Low_complexity Low_complexity 1 30 0 598 132 5 193 chr13 57908858 57908903 -43964266 + MER3 DNA MER1_type 5 57 -105 2491 48 3 0 chr13 57908903 57909197 -43963972 + AluY SINE Alu 1 295 -16 598 132 5 193 chr13 57909197 57909271 -43963898 + MER3 DNA MER1_type 57 78 -84 2299 118 0 0 chr13 57909271 57909600 -43963569 - AluSq SINE Alu 0 329 1 598 132 5 193 chr13 57909600 57909674 -43963495 + MER3 DNA MER1_type 78 164 -45 39 22 0 0 chr13 57909677 57909723 -43963446 + AT_rich Low_complexity Low_complexity 1 46 0 1397 151 46 46 chr13 57909792 57910051 -43963118 + AluJb SINE Alu 46 304 -8 289 271 8 82 chr13 57910066 57910188 -43962981 + MIR SINE MIR 150 262 0 190 259 185 28 chr13 57910762 57910870 -43962299 + MIR SINE MIR 132 256 -6 330 67 0 0 chr13 57912181 57912226 -43960943 + (TG)n Simple_repeat Simple_repeat 1 45 0 275 292 18 76 chr13 57912658 57912834 -43960335 - MIR SINE MIR -67 141 22 1571 175 21 4 chr13 57913000 57913331 -43959838 - AluJo SINE Alu 0 336 1 2309 95 0 0 chr13 57913381 57913677 -43959492 + AluSx SINE Alu 1 296 -16 384 130 52 35 chr13 57914113 57914125 -43959044 + A-rich Low_complexity Low_complexity 4 14 -106 1061 201 0 0 chr13 57914125 57914299 -43958870 + FAM SINE Alu 1 174 -1 384 130 52 35 chr13 57914299 57914401 -43958768 + A-rich Low_complexity Low_complexity 14 120 0 253 264 189 0 chr13 57915061 57915167 -43958002 - MIR SINE MIR -71 191 66 1301 225 19 76 chr13 57915202 57915545 -43957624 - L1ME1 LINE L1 -5 6161 5864 478 83 0 0 chr13 57915545 57915605 -43957564 - AluS SINE Alu -239 73 14 1301 225 19 76 chr13 57915605 57915965 -43957204 - L1ME1 LINE L1 -302 5864 5485 2009 143 7 3 chr13 57916054 57916354 -43956815 - AluSx SINE Alu -11 301 1 1072 185 0 0 chr13 57917116 57917289 -43955880 + FAM SINE Alu 1 173 -2 225 209 0 35 chr13 57917291 57917377 -43955792 + GA-rich Low_complexity Low_complexity 2 84 0 400 224 95 9 chr13 57917883 57917999 -43955170 + MER96 DNA MER1_type? 1 126 -49 2087 109 0 11 chr13 57918175 57918507 -43954662 - AluSx SINE Alu 0 329 1 281 319 58 14 chr13 57919254 57919392 -43953777 - MIR SINE MIR -38 224 81 1445 239 7 0 chr13 57919912 57920205 -43952964 + AluJo SINE Alu 1 295 -17 539 355 166 35 chr13 57920499 57920641 -43952528 - L2 LINE L2 -648 2666 2544 2258 89 3 10 chr13 57920641 57920943 -43952226 + AluY SINE Alu 1 300 -11 539 355 166 35 chr13 57920943 57921513 -43951656 - L2 LINE L2 -770 2544 2050 1961 129 3 35 chr13 57921513 57921830 -43951339 + AluJb SINE Alu 1 307 -5 539 355 166 35 chr13 57921830 57921962 -43951207 - L2 LINE L2 -1264 2050 1937 2020 114 0 24 chr13 57921962 57922306 -43950863 + AluSx SINE Alu 1 337 0 539 355 166 35 chr13 57922306 57922587 -43950582 - L2 LINE L2 -1377 1937 1390 212 356 139 9 chr13 57922668 57922783 -43950386 - L2 LINE L2 -2068 1246 1117 454 292 62 14 chr13 57922911 57923055 -43950114 + MIR SINE MIR 37 187 -75 1904 169 13 0 chr13 57923157 57923464 -43949705 + AluJb SINE Alu 1 311 -1 201 338 15 15 chr13 57923617 57923685 -43949484 + L2 LINE L2 3201 3268 -4 1501 160 112 0 chr13 57924045 57924313 -43948856 + AluJo SINE Alu 1 298 -14 206 271 176 12 chr13 57925505 57925590 -43947579 - MIR SINE MIR -51 211 113 2075 84 6 59 chr13 57926245 57926568 -43946601 + AluY SINE Alu 1 306 -5 1682 173 6 40 chr13 57926867 57927190 -43945979 + AluJo SINE Alu 1 312 0 2808 16 0 3 chr13 57927676 57927990 -43945179 - AluYb8 SINE Alu -5 313 1 371 313 119 62 chr13 57928100 57928502 -43944667 + L3 LINE CR1 1145 1569 -8 940 118 0 0 chr13 57928638 57928811 -43944358 - FLAM_C SINE Alu 0 173 1 2486 82 0 0 chr13 57928854 57929160 -43944009 - AluSc SINE Alu -3 306 1 341 293 106 0 chr13 57929177 57929300 -43943869 + MIR SINE MIR 117 252 -10 2154 130 0 3 chr13 57929754 57930055 -43943114 + AluSx SINE Alu 1 300 -12 2228 165 16 115 chr13 57930132 57930799 -43942370 + L1MB8 LINE L1 5572 6172 -6 2249 134 0 0 chr13 57930931 57931237 -43941932 + AluSx SINE Alu 1 306 -6 2352 84 0 29 chr13 57931238 57931546 -43941623 + AluSx SINE Alu 2 300 -12 2235 114 0 0 chr13 57931565 57931854 -43941315 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr13 57931854 57931876 -43941293 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 57932278 57932301 -43940868 + (CAT)n Simple_repeat Simple_repeat 3 25 0 1188 221 24 48 chr13 57932606 57932719 -43940450 + AluJb SINE Alu 1 115 -187 2466 67 0 0 chr13 57932719 57933017 -43940152 - AluY SINE Alu -13 298 1 1188 221 24 48 chr13 57933017 57933193 -43939976 + AluJb SINE Alu 115 283 -19 25 75 0 0 chr13 57933285 57933338 -43939831 + AT_rich Low_complexity Low_complexity 1 53 0 1397 161 22 62 chr13 57933545 57933819 -43939350 + AluJb SINE Alu 35 297 -15 479 311 108 31 chr13 57933849 57934051 -43939118 + HAL1 LINE L1 811 996 -1511 1743 149 50 17 chr13 57934051 57934352 -43938817 + AluJb SINE Alu 1 311 -1 479 311 108 31 chr13 57934352 57934500 -43938669 + HAL1 LINE L1 996 1188 -1319 1753 83 0 0 chr13 57934547 57934765 -43938404 + AluY SINE Alu 84 301 -10 1017 204 54 14 chr13 57934911 57935132 -43938037 + AluJo SINE Alu 73 302 -10 206 289 0 0 chr13 57935132 57935184 -43937985 + GA-rich Low_complexity Low_complexity 1 52 0 2325 97 0 7 chr13 57936019 57936317 -43936852 + AluSg1 SINE Alu 1 296 -13 405 338 64 37 chr13 57936410 57936669 -43936500 + L1MB3 LINE L1 4759 5028 -1118 2406 93 0 0 chr13 57936669 57936970 -43936199 + AluSg1 SINE Alu 1 301 -8 405 338 64 37 chr13 57936970 57937006 -43936163 + L1MB3 LINE L1 5028 5062 -1084 268 223 162 20 chr13 57937162 57937359 -43935810 + L1MB3 LINE L1 5254 5478 -2330 1629 171 76 0 chr13 57937505 57937780 -43935389 + AluJo SINE Alu 1 296 -16 259 250 36 0 chr13 57939256 57939312 -43933857 + MER5B DNA MER1_type 1 58 -120 1185 103 17 11 chr13 57939312 57939486 -43933683 + AluJb SINE Alu 122 296 -16 517 218 16 24 chr13 57939486 57939610 -43933559 + MER5B DNA MER1_type 55 177 -1 23 33 0 0 chr13 57939737 57939767 -43933402 + AT_rich Low_complexity Low_complexity 1 30 0 1473 141 118 4 chr13 57940786 57941063 -43932106 + AluSx SINE Alu 1 306 0 259 298 73 57 chr13 57942090 57942214 -43930955 + MIR3 SINE MIR 76 201 -7 2255 105 0 7 chr13 57942625 57942920 -43930249 - AluSg SINE Alu -16 294 2 285 245 245 0 chr13 57943098 57943192 -43929977 + L2 LINE L2 3188 3304 -9 2219 113 3 3 chr13 57943705 57944007 -43929162 + AluSx SINE Alu 5 306 -6 2177 110 0 10 chr13 57944256 57944555 -43928614 - AluSx SINE Alu -16 296 1 1887 164 0 16 chr13 57944709 57945014 -43928155 - AluJb SINE Alu -12 300 1 2329 107 3 0 chr13 57945208 57945518 -43927651 + AluSx SINE Alu 1 311 -1 1086 157 30 30 chr13 57945711 57945902 -43927267 + L1MB3 LINE L1 5940 6133 -50 2170 101 35 0 chr13 57945902 57946190 -43926979 + AluSp SINE Alu 1 298 -15 1086 157 30 30 chr13 57946190 57946234 -43926935 + L1MB3 LINE L1 6132 6175 -8 913 190 0 95 chr13 57946256 57946477 -43926692 + AluJb SINE Alu 87 286 -26 54 29 0 0 chr13 57946477 57946545 -43926624 + AT_rich Low_complexity Low_complexity 1 68 0 2346 104 3 0 chr13 57946919 57947218 -43925951 - AluSx SINE Alu -12 300 1 237 129 32 16 chr13 57947998 57948060 -43925109 + (TA)n Simple_repeat Simple_repeat 2 64 0 867 108 0 0 chr13 57948287 57948407 -43924762 - AluSg/x SINE Alu -3 307 188 280 245 133 20 chr13 57948481 57948527 -43924642 - MER58C DNA MER1_type -71 144 105 2448 70 3 0 chr13 57948527 57948826 -43924343 + AluSp SINE Alu 1 300 -13 280 245 133 20 chr13 57948826 57948877 -43924292 - MER58C DNA MER1_type -110 105 36 618 222 97 38 chr13 57949507 57949692 -43923477 - L2 LINE L2 0 3313 3118 190 158 79 0 chr13 57949745 57949783 -43923386 - MIR SINE MIR -221 41 1 1191 271 43 24 chr13 57949964 57950381 -43922788 - MLT1J LTR MaLR -82 429 5 281 293 12 12 chr13 57950434 57950516 -43922653 + L2 LINE L2 3228 3309 -4 495 237 143 9 chr13 57951094 57951318 -43921851 + MER112 DNA MER1_type 1 254 -6 2287 112 0 0 chr13 57951320 57951625 -43921544 + AluSx SINE Alu 1 305 -7 5620 155 71 42 chr13 57951763 57951810 -43921359 + L1MCa LINE L1 70 114 -6312 2493 70 3 13 chr13 57951810 57952126 -43921043 - AluSq SINE Alu 0 313 1 5620 155 71 42 chr13 57952126 57953069 -43920100 + L1MCa LINE L1 114 1028 -5398 2219 114 3 0 chr13 57953069 57953366 -43919803 + AluSq SINE Alu 1 298 -15 5620 155 71 42 chr13 57953366 57953443 -43919726 + L1MCa LINE L1 1028 1101 -5325 1451 148 19 113 chr13 57953443 57953754 -43919415 + AluJo SINE Alu 1 282 -30 234 0 0 0 chr13 57953758 57953784 -43919385 + (TAA)n Simple_repeat Simple_repeat 2 27 0 5620 155 71 42 chr13 57953784 57953957 -43919212 + L1MCa LINE L1 1103 1354 -5072 826 135 85 103 chr13 57953946 57954019 -43919150 + L1MCa LINE L1 1199 1272 -5154 * 2858 10 0 0 chr13 57954019 57954330 -43918839 + AluY SINE Alu 1 311 0 826 135 85 103 chr13 57954330 57954538 -43918631 + L1MCa LINE L1 1272 1475 -4951 1416 158 23 0 chr13 57954538 57954759 -43918410 + AluJb SINE Alu 85 310 -2 1083 110 113 19 chr13 57954759 57954975 -43918194 + L1MCa LINE L1 1467 1793 -4633 233 213 0 21 chr13 57954981 57955028 -43918141 + L1M4 LINE L1 3502 3547 -2599 384 103 0 0 chr13 57955028 57955086 -43918083 + (TCCCC)n Simple_repeat Simple_repeat 1 58 0 1023 146 104 0 chr13 57955092 57955256 -43917913 - AluJb SINE Alu -131 181 1 790 205 26 0 chr13 57955264 57955420 -43917749 + L1M4 LINE L1 3576 3735 -2411 1540 146 11 57 chr13 57955423 57955703 -43917466 + L1MC1 LINE L1 6020 6286 -47 1635 148 7 62 chr13 57955704 57955798 -43917371 - AluJo SINE Alu -24 288 190 1938 138 14 3 chr13 57955798 57956081 -43917088 - AluSx SINE Alu -22 290 5 1635 148 7 62 chr13 57956081 57956291 -43916878 - AluJo SINE Alu -122 190 1 30 27 0 0 chr13 57957097 57957134 -43916035 + AT_rich Low_complexity Low_complexity 1 37 0 488 176 6 126 chr13 57957684 57957706 -43915463 - MER20 DNA MER1_type -3 216 193 2347 93 3 0 chr13 57957706 57958008 -43915161 - AluSq SINE Alu -10 303 1 488 176 6 126 chr13 57958008 57958144 -43915025 - MER20 DNA MER1_type -26 193 77 880 138 8 8 chr13 57958158 57958288 -43914881 - FLAM_C SINE Alu -3 130 1 256 167 0 0 chr13 57958322 57958364 -43914805 - L1M3 LINE L1 -418 5753 5712 513 47 0 0 chr13 57958411 57958475 -43914694 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1489 162 59 19 chr13 57958475 57958746 -43914423 - AluJo SINE Alu -30 282 1 22 70 0 0 chr13 57958751 57958794 -43914375 + AT_rich Low_complexity Low_complexity 1 43 0 510 298 81 5 chr13 57958834 57959032 -43914137 - MIR SINE MIR -2 260 48 637 174 23 45 chr13 57959129 57959261 -43913908 - FLAM_A SINE Alu -4 129 1 219 103 0 0 chr13 57959361 57959400 -43913769 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 440 104 90 15 chr13 57959416 57959483 -43913686 - tRNA-Glu-GAA tRNA tRNA -3 72 1 199 330 60 30 chr13 57959848 57959948 -43913221 + L3 LINE CR1 1468 1570 -7 327 49 0 0 chr13 57959970 57960011 -43913158 + (TC)n Simple_repeat Simple_repeat 2 42 0 2209 99 10 7 chr13 57960028 57960322 -43912847 - AluSx SINE Alu -17 295 1 2453 74 0 0 chr13 57960838 57961135 -43912034 + AluY SINE Alu 1 297 -14 26 74 0 0 chr13 57961209 57961263 -43911906 + AT_rich Low_complexity Low_complexity 1 54 0 648 301 138 19 chr13 57961577 57962006 -43911163 + L2 LINE L2 2048 2527 -787 2489 83 0 0 chr13 57962041 57962353 -43910816 + AluSx SINE Alu 1 312 0 472 216 0 79 chr13 57962398 57962488 -43910681 + L1MA10 LINE L1 6200 6277 -57 2257 107 3 0 chr13 57962488 57962786 -43910383 - AluSx SINE Alu -13 299 1 472 216 0 79 chr13 57962786 57962834 -43910335 + L1MA10 LINE L1 6277 6327 -7 203 156 0 0 chr13 57962867 57962899 -43910270 + (CAGG)n Simple_repeat Simple_repeat 3 34 0 207 0 0 0 chr13 57963064 57963087 -43910082 + (ATGTG)n Simple_repeat Simple_repeat 5 27 0 397 307 0 26 chr13 57963106 57963259 -43909910 + L1MC5 LINE L1 7285 7433 -528 234 326 38 15 chr13 57963256 57963388 -43909781 - L1MC4a LINE L1 -1116 6692 6558 * 284 263 149 18 chr13 57963456 57963570 -43909599 + L2 LINE L2 2573 2701 -613 2004 103 29 18 chr13 57964120 57964424 -43908745 - AluSx SINE Alu 0 308 2 1572 144 144 0 chr13 57964905 57965175 -43907994 + AluSx SINE Alu 1 309 -3 312 245 129 92 chr13 57965286 57965449 -43907720 + MER63A DNA MER1_type 5 173 -37 211 338 14 35 chr13 57965546 57965688 -43907481 + L2 LINE L2 2880 3018 -254 1757 179 0 7 chr13 57965759 57966049 -43907120 - AluJb SINE Alu -20 292 5 750 157 61 0 chr13 57966070 57966185 -43906984 + FLAM_A SINE Alu 2 123 -10 183 129 0 0 chr13 57966658 57966689 -43906480 + (A)n Simple_repeat Simple_repeat 1 31 0 196 128 21 21 chr13 57966904 57966951 -43906218 + CT-rich Low_complexity Low_complexity 2 48 0 2311 97 0 0 chr13 57967610 57967909 -43905260 + AluSx SINE Alu 1 299 -13 274 276 26 13 chr13 57968051 57968127 -43905042 + L2 LINE L2 3187 3263 -50 1907 142 3 19 chr13 57968325 57968634 -43904535 - AluJo SINE Alu -8 304 1 943 117 0 16 chr13 57968674 57968802 -43904367 - FLAM_C SINE Alu -6 127 2 2292 102 3 0 chr13 57968926 57969229 -43903940 - AluSg SINE Alu -6 304 1 2249 98 0 0 chr13 57969373 57969680 -43903489 - AluSx SINE Alu 0 307 1 280 250 138 56 chr13 57969805 57969965 -43903204 + L2 LINE L2 3093 3265 -48 1806 171 3 3 chr13 57970642 57970951 -43902218 + AluJo SINE Alu 1 309 -3 560 120 9 137 chr13 57970969 57971130 -43902039 + L1PA8 LINE L1 5991 6172 0 22 35 0 0 chr13 57971496 57971525 -43901644 + AT_rich Low_complexity Low_complexity 1 29 0 958 159 0 0 chr13 57971633 57971784 -43901385 - AluJo SINE Alu -44 268 118 836 166 0 14 chr13 57971796 57971941 -43901228 - FLAM_C SINE Alu 0 143 1 1382 146 4 13 chr13 57972143 57972369 -43900800 - AluJb SINE Alu -2 310 87 2390 92 0 7 chr13 57972454 57972760 -43900409 - AluSq SINE Alu -9 304 1 2217 108 0 0 chr13 57972939 57973234 -43899935 - AluSx SINE Alu -5 307 13 1207 151 14 18 chr13 57973289 57973367 -43899802 - AluJo SINE Alu -94 218 141 1642 194 7 3 chr13 57973367 57973656 -43899513 - AluJb SINE Alu -17 295 6 1207 151 14 18 chr13 57973656 57973796 -43899373 - AluJo SINE Alu -171 141 1 1890 224 85 4 chr13 57973803 57974285 -43898884 - L1MC4 LINE L1 0 8042 7522 266 258 124 21 chr13 57974383 57974480 -43898689 + MIR3 SINE MIR 53 159 -49 1411 194 4 4 chr13 57974484 57974742 -43898427 + AluJo SINE Alu 12 269 -43 1908 115 39 20 chr13 57974843 57975148 -43898021 + AluYa5 SINE Alu 1 311 0 2162 86 3 16 chr13 57975152 57975456 -43897713 + AluSp SINE Alu 1 300 -13 267 346 10 10 chr13 57975485 57975586 -43897583 - L3 LINE CR1 -386 1191 1091 834 134 134 0 chr13 57975590 57975732 -43897437 + AluSq SINE Alu 135 295 -18 208 184 20 0 chr13 57975907 57975956 -43897213 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 313 359 77 36 chr13 57976102 57976322 -43896847 - L3 LINE CR1 -1151 426 198 214 268 36 0 chr13 57976310 57976366 -43896803 + MIR SINE MIR 48 105 -103 * 376 298 74 0 chr13 57976444 57976565 -43896604 - MIR SINE MIR -71 191 62 1918 154 0 0 chr13 57977082 57977368 -43895801 + AluJb SINE Alu 1 286 -26 571 228 38 60 chr13 57977845 57978029 -43895140 + MER21B LTR ERV1 320 499 -364 1080 151 0 29 chr13 57978046 57978295 -43894874 + AluJb SINE Alu 121 364 0 333 368 35 11 chr13 57978386 57978560 -43894609 - MIR SINE MIR -71 191 14 2098 102 7 7 chr13 57978669 57978987 -43894182 + AluSq SINE Alu 1 318 0 291 54 0 0 chr13 57979871 57979908 -43893261 + (TA)n Simple_repeat Simple_repeat 1 37 0 2239 123 0 0 chr13 57979908 57980247 -43892922 - AluSc SINE Alu 0 339 1 221 192 41 55 chr13 57980291 57980364 -43892805 + L3b LINE CR1 1324 1395 -188 1254 168 0 14 chr13 57982389 57982598 -43890571 + AluJo SINE Alu 85 290 -22 2327 108 7 0 chr13 57982609 57982915 -43890254 - AluSg SINE Alu -2 308 1 27 49 0 0 chr13 57983476 57983517 -43889652 + AT_rich Low_complexity Low_complexity 1 41 0 2613 59 0 0 chr13 57983517 57983823 -43889346 - AluY SINE Alu -5 306 1 818 156 0 23 chr13 57983832 57983960 -43889209 - FLAM_C SINE Alu -17 126 2 2113 82 0 0 chr13 57984021 57984278 -43888891 + AluSg SINE Alu 1 257 -53 610 86 0 0 chr13 57984279 57984360 -43888809 + AluSc SINE Alu 213 293 -16 549 244 46 74 chr13 57984362 57984579 -43888590 - L1ME LINE L1 -311 5810 5600 840 179 0 7 chr13 57984607 57984747 -43888422 - FLAM_C SINE Alu -4 139 1 491 214 46 66 chr13 57984819 57985051 -43888118 - L1ME LINE L1 -622 5552 5301 2360 88 7 10 chr13 57985051 57985220 -43887949 - AluSp SINE Alu -9 304 135 2266 104 0 7 chr13 57985220 57985518 -43887651 - AluSc SINE Alu -13 296 1 2360 88 7 10 chr13 57985518 57985653 -43887516 - AluSp SINE Alu -178 135 1 491 214 46 66 chr13 57985653 57985742 -43887427 - L1ME LINE L1 -873 5301 5212 946 177 6 18 chr13 57985791 57985955 -43887214 - AluJb SINE Alu -16 296 135 2415 61 0 29 chr13 57986623 57986934 -43886235 + AluY SINE Alu 2 303 -8 2436 97 0 0 chr13 57987168 57987478 -43885691 + AluSg SINE Alu 1 310 0 2461 70 0 0 chr13 57987565 57987865 -43885304 - AluY SINE Alu -11 300 1 2232 109 0 7 chr13 57987865 57988167 -43885002 - AluSq SINE Alu -13 300 1 378 0 0 0 chr13 57988241 57988283 -43884886 + (TG)n Simple_repeat Simple_repeat 2 43 0 388 113 0 16 chr13 57988617 57988679 -43884490 - L1MC4 LINE L1 -1 8041 7981 1357 105 0 11 chr13 57988680 57988870 -43884299 - AluSg/x SINE Alu -5 307 120 1140 166 62 231 chr13 57988870 57989152 -43884017 - L1MC4 LINE L1 -53 7989 7661 2035 136 10 3 chr13 57989152 57989460 -43883709 - AluSx SINE Alu -2 310 1 1140 166 62 231 chr13 57989460 57989624 -43883545 - L1MC4 LINE L1 -381 7661 7471 2082 135 24 3 chr13 57989624 57989921 -43883248 + AluSx SINE Alu 1 303 -9 1140 166 62 231 chr13 57989921 57990224 -43882945 - L1MC4 LINE L1 -571 7471 7447 1716 172 3 34 chr13 57990224 57990515 -43882654 - AluJo SINE Alu -30 282 1 1140 166 62 231 chr13 57990515 57990763 -43882406 - L1MC4 LINE L1 -595 7447 7159 2318 98 0 0 chr13 57990763 57991091 -43882078 - AluSc SINE Alu 0 340 13 1689 163 3 45 chr13 57991143 57991456 -43881713 - AluJo SINE Alu -6 306 7 1967 128 0 0 chr13 57991773 57992047 -43881122 - AluSx SINE Alu -38 274 1 2426 92 0 12 chr13 57992048 57992376 -43880793 - THE1B LTR MaLR -40 324 1 200 250 0 167 chr13 57992663 57992695 -43880474 + L2 LINE L2 3169 3205 -67 2477 73 0 0 chr13 57992695 57992997 -43880172 - AluY SINE Alu -9 302 1 200 250 0 167 chr13 57992997 57993072 -43880097 + L2 LINE L2 3205 3258 -14 1792 167 0 21 chr13 57993219 57993507 -43879662 - AluJo SINE Alu -20 292 11 1823 161 13 3 chr13 57993673 57993971 -43879198 + AluJo SINE Alu 1 301 -11 408 216 125 153 chr13 57994530 57994618 -43878551 - L1ME4a LINE L1 -2 6119 6030 2296 107 0 0 chr13 57994618 57994918 -43878251 - AluSx SINE Alu -11 301 2 408 216 125 153 chr13 57994918 57995225 -43877944 - L1ME4a LINE L1 -91 6030 5745 1908 165 0 0 chr13 57995225 57995510 -43877659 - AluJo SINE Alu -27 285 1 408 216 125 153 chr13 57995510 57995729 -43877440 - L1ME4a LINE L1 -376 5745 5521 22 0 0 0 chr13 57996373 57996395 -43876774 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 57998556 57998584 -43874585 + AT_rich Low_complexity Low_complexity 1 28 0 316 268 137 104 chr13 58000183 58000635 -43872534 + L1M2 LINE L1 788 1254 -5595 198 0 0 0 chr13 58001157 58001179 -43871990 + (A)n Simple_repeat Simple_repeat 1 22 0 267 133 0 0 chr13 58003772 58003817 -43869352 + (TG)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr13 58004987 58005009 -43868160 + AT_rich Low_complexity Low_complexity 1 22 0 2181 98 3 0 chr13 58005555 58005841 -43867328 - AluSg SINE Alu -23 287 1 22 0 0 0 chr13 58007915 58007937 -43865232 + AT_rich Low_complexity Low_complexity 1 22 0 2468 68 3 0 chr13 58008839 58009135 -43864034 - AluSq SINE Alu -11 302 6 2219 122 3 0 chr13 58009422 58009726 -43863443 + AluSx SINE Alu 1 305 -7 2176 127 0 10 chr13 58009810 58010124 -43863045 + AluSx SINE Alu 1 311 -1 200 229 71 14 chr13 58012040 58012110 -43861059 - L2 LINE L2 -68 3245 3172 427 288 27 9 chr13 58015813 58015924 -43857245 + L2 LINE L2 3156 3268 -4 25 65 0 0 chr13 58018151 58018197 -43854972 + AT_rich Low_complexity Low_complexity 1 46 0 2182 97 10 7 chr13 58018659 58018948 -43854221 - AluSg SINE Alu -20 290 1 1899 128 50 0 chr13 58019192 58019474 -43853695 - AluSx SINE Alu -16 296 1 2406 66 7 0 chr13 58019506 58019795 -43853374 - L1PA7 LINE L1 -5 6149 5859 3682 182 118 48 chr13 58019796 58019956 -43853213 + L1MC3 LINE L1 6718 6865 -920 2453 77 0 0 chr13 58019956 58020255 -43852914 + AluSq SINE Alu 1 299 -14 3682 182 118 48 chr13 58020255 58020900 -43852269 + L1MC3 LINE L1 6865 7609 -176 1854 119 16 64 chr13 58020900 58021077 -43852092 - AluSx SINE Alu -12 300 143 2496 69 3 0 chr13 58021077 58021382 -43851787 - AluY SINE Alu -4 307 2 1854 119 16 64 chr13 58021382 58021515 -43851654 - AluSx SINE Alu -169 143 5 3682 182 118 48 chr13 58021515 58021706 -43851463 + L1MC3 LINE L1 7609 7785 0 2002 99 4 0 chr13 58021716 58021968 -43851201 + AluSx SINE Alu 1 253 -59 318 167 0 0 chr13 58022190 58022250 -43850919 + CT-rich Low_complexity Low_complexity 3 62 0 1506 198 23 7 chr13 58022263 58022566 -43850603 - AluJb SINE Alu 0 312 5 1276 188 123 0 chr13 58023523 58023784 -43849385 + AluJo SINE Alu 11 303 -9 303 93 0 0 chr13 58024003 58024046 -43849123 + (TA)n Simple_repeat Simple_repeat 2 44 0 272 273 0 0 chr13 58024489 58024555 -43848614 - MER103 DNA DNA -49 117 52 294 215 17 164 chr13 58024669 58024768 -43848401 + HAL1 LINE L1 424 487 -2020 2200 95 0 10 chr13 58024768 58025064 -43848105 + AluSx SINE Alu 10 302 -10 294 215 17 164 chr13 58025064 58025141 -43848028 + HAL1 LINE L1 487 574 -1933 1171 218 42 54 chr13 58025318 58025559 -43847610 + HAL1 LINE L1 587 829 -1678 2323 81 0 0 chr13 58025559 58025877 -43847292 + AluSq SINE Alu 1 318 0 1171 218 42 54 chr13 58025877 58025948 -43847221 + HAL1 LINE L1 829 899 -1608 2274 94 19 13 chr13 58025948 58026256 -43846913 + AluSg SINE Alu 1 310 0 1171 218 42 54 chr13 58026256 58026275 -43846894 + HAL1 LINE L1 899 917 -1590 222 315 130 22 chr13 58026281 58026373 -43846796 + L2 LINE L2 3211 3312 -1 2262 117 0 3 chr13 58026949 58027257 -43845912 - AluSc SINE Alu -2 307 1 2146 121 0 3 chr13 58027307 58027596 -43845573 - AluSx SINE Alu -22 290 3 563 251 34 89 chr13 58028604 58028805 -43844364 + L1MEc LINE L1 1860 2070 -4326 1762 163 25 0 chr13 58028805 58029087 -43844082 + AluJb SINE Alu 1 289 -23 563 251 34 89 chr13 58029087 58029102 -43844067 + L1MEc LINE L1 2070 2084 -4312 1026 141 0 0 chr13 58029102 58029272 -43843897 + (TA)n Simple_repeat Simple_repeat 2 171 0 563 251 34 89 chr13 58029272 58029493 -43843676 + L1MEc LINE L1 2084 2274 -4122 1708 182 0 3 chr13 58029507 58029798 -43843371 + AluJb SINE Alu 1 290 -22 814 134 28 49 chr13 58030204 58030346 -43842823 - FLAM_C SINE Alu -3 140 2 372 265 77 72 chr13 58030625 58030806 -43842363 - MIR SINE MIR -32 230 49 2235 105 0 0 chr13 58030813 58031109 -43842060 - AluSx SINE Alu -16 296 1 417 314 21 32 chr13 58031915 58032035 -43841134 - L1ME LINE L1 -332 5789 5670 2002 146 3 3 chr13 58032035 58032329 -43840840 - AluJo SINE Alu -18 294 1 417 314 21 32 chr13 58032329 58032396 -43840773 - L1ME LINE L1 -451 5670 5604 1787 159 17 7 chr13 58032435 58032737 -43840432 + AluJb SINE Alu 1 305 -7 624 223 68 39 chr13 58032744 58032950 -43840219 - L1MC5 LINE L1 -30 7931 7720 2204 123 3 0 chr13 58032950 58033258 -43839911 + AluSx SINE Alu 1 309 -3 653 160 0 0 chr13 58033291 58033385 -43839784 - FRAM/FAM SINE Alu -86 90 1 2144 91 3 20 chr13 58033423 58033744 -43839425 + AluSq SINE Alu 1 313 0 217 0 29 29 chr13 58034417 58034451 -43838718 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2197 100 4 0 chr13 58034453 58034734 -43838435 - AluSp SINE Alu -31 282 1 232 209 116 93 chr13 58034898 58035027 -43838142 + AluYb8 SINE Alu 2 133 -175 2062 93 10 55 chr13 58035059 58035369 -43837800 + AluSx SINE Alu 1 296 -16 803 217 19 0 chr13 58035438 58035599 -43837570 - AluJb SINE Alu -15 297 134 248 0 0 30 chr13 58035603 58035636 -43837533 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 819 144 0 0 chr13 58035677 58035802 -43837367 - AluJb SINE Alu -175 137 13 2380 75 7 3 chr13 58035836 58036142 -43837027 - AluY SINE Alu -4 307 1 210 298 83 74 chr13 58036288 58036409 -43836760 + L2 LINE L2 3148 3269 -3 1084 152 11 11 chr13 58036591 58036769 -43836400 - AluSg/x SINE Alu -1 309 132 2200 125 3 0 chr13 58036769 58037080 -43836089 - AluSx SINE Alu 0 312 1 250 258 25 23 chr13 58037337 58037491 -43835678 + MER5A DNA MER1_type 42 166 -23 278 264 0 56 chr13 58038171 58038243 -43834926 - L2 LINE L2 -89 3183 3116 1388 164 89 31 chr13 58038374 58038666 -43834503 + AluJo SINE Alu 1 309 -3 2033 128 7 0 chr13 58038732 58039030 -43834139 - AluSx SINE Alu -12 300 1 202 122 0 61 chr13 58039070 58039119 -43834050 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 1623 151 40 33 chr13 58039178 58039477 -43833692 + AluSx SINE Alu 1 301 -11 2631 50 0 0 chr13 58039668 58039970 -43833199 + AluY SINE Alu 1 302 -9 1993 136 7 0 chr13 58040148 58040448 -43832721 + AluSx SINE Alu 1 302 0 2290 107 3 0 chr13 58040733 58041042 -43832127 + AluSp SINE Alu 1 310 -3 246 128 0 0 chr13 58041330 58041369 -43831800 + (T)n Simple_repeat Simple_repeat 1 39 0 225 224 52 0 chr13 58042158 58042216 -43830953 + L2 LINE L2 3252 3312 -1 2484 39 0 0 chr13 58043216 58043528 -43829641 - AluY SINE Alu 0 312 1 2293 103 0 13 chr13 58044855 58045166 -43828003 - AluSc SINE Alu -2 307 1 897 103 71 0 chr13 58045166 58045292 -43827877 - AluSq/x SINE Alu -177 135 1 213 175 0 0 chr13 58045292 58045332 -43827837 + CT-rich Low_complexity Low_complexity 2 41 0 2219 108 3 16 chr13 58045633 58045947 -43827222 + AluSq SINE Alu 1 310 -3 1692 169 3 68 chr13 58046018 58046242 -43826927 - AluJo SINE Alu 0 320 122 2232 116 0 16 chr13 58046242 58046415 -43826754 - AluSx SINE Alu -6 306 139 2144 137 0 0 chr13 58046415 58046714 -43826455 - AluSp SINE Alu -14 299 1 2232 116 0 16 chr13 58046714 58046851 -43826318 - AluSx SINE Alu -173 139 1 1692 169 3 68 chr13 58046851 58046965 -43826204 - AluJo SINE Alu -198 122 2 2124 120 10 0 chr13 58046981 58047281 -43825888 - AluSq SINE Alu -10 303 1 1291 134 10 0 chr13 58047448 58047642 -43825527 + AluSg/x SINE Alu 110 305 -5 338 298 79 51 chr13 58048340 58048518 -43824651 + MIR SINE MIR 35 217 -45 313 103 0 35 chr13 58049334 58049392 -43823777 + L1MA2 LINE L1 6249 6304 0 310 147 76 0 chr13 58049407 58049847 -43823322 + (TA)n Simple_repeat Simple_repeat 1 473 0 1675 147 48 0 chr13 58049847 58050120 -43823049 - AluJb SINE Alu -26 286 1 25 0 0 0 chr13 58050123 58050148 -43823021 + AT_rich Low_complexity Low_complexity 1 25 0 1696 185 10 16 chr13 58050344 58050658 -43822511 - AluJo SINE Alu 0 312 1 1898 127 3 60 chr13 58050693 58051057 -43822112 + AluSx SINE Alu 1 312 0 232 252 77 91 chr13 58051274 58051417 -43821752 - MIR SINE MIR -72 190 50 318 285 35 56 chr13 58052707 58052851 -43820318 - L3b LINE CR1 -241 1342 1202 215 313 62 0 chr13 58052865 58052945 -43820224 - MIR SINE MIR -8 254 170 29 47 0 0 chr13 58052948 58052991 -43820178 + AT_rich Low_complexity Low_complexity 1 43 0 276 190 80 70 chr13 58053052 58053152 -43820017 - MIR SINE MIR -109 153 53 2262 112 0 0 chr13 58053221 58053517 -43819652 - AluSq SINE Alu -17 296 1 214 250 0 31 chr13 58053527 58053591 -43819578 + T-rich Low_complexity Low_complexity 3 64 0 21 36 0 0 chr13 58053645 58053673 -43819496 + AT_rich Low_complexity Low_complexity 1 28 0 727 91 30 0 chr13 58053918 58054017 -43819152 - U6 snRNA snRNA -5 102 1 483 304 48 10 chr13 58054080 58054287 -43818882 + MIR SINE MIR 33 247 -15 237 344 52 21 chr13 58054340 58054436 -43818733 + L2 LINE L2 3142 3240 -32 1733 158 7 42 chr13 58054539 58054849 -43818320 + AluJo SINE Alu 6 304 -8 2111 131 34 0 chr13 58054970 58055268 -43817901 - AluSg SINE Alu -2 308 1 675 187 8 37 chr13 58055460 58055594 -43817575 - FLAM_A SINE Alu -3 130 1 2669 29 0 7 chr13 58056600 58056907 -43816262 - AluY SINE Alu -6 305 1 2268 108 0 0 chr13 58057415 58057711 -43815458 + AluSq SINE Alu 1 296 -17 2071 115 21 0 chr13 58058509 58058795 -43814374 - AluSx SINE Alu -18 294 3 599 285 44 48 chr13 58058810 58059105 -43814064 - HAL1 LINE L1 -1940 567 274 828 242 26 41 chr13 58059478 58059747 -43813422 - HAL1 LINE L1 0 2507 2243 2059 135 3 22 chr13 58059755 58060073 -43813096 - AluSx SINE Alu 0 312 1 595 296 117 0 chr13 58060755 58060951 -43812218 + MIR SINE MIR 8 226 -36 514 101 58 10 chr13 58060987 58061387 -43811782 + (TA)n Simple_repeat Simple_repeat 1 419 0 1697 131 127 0 chr13 58061396 58061655 -43811514 - AluSx SINE Alu -20 292 1 2388 48 6 70 chr13 58061903 58062234 -43810935 + AluY SINE Alu 1 310 -1 342 0 0 0 chr13 58062317 58062355 -43810814 + (TA)n Simple_repeat Simple_repeat 2 39 0 1438 187 33 40 chr13 58062356 58062656 -43810513 - AluJb SINE Alu -14 298 1 2048 118 12 40 chr13 58062852 58063229 -43809940 - AluSq SINE Alu 0 368 1 2500 74 0 3 chr13 58063608 58063920 -43809249 - AluY SINE Alu 0 311 1 2774 3 0 3 chr13 58065319 58065619 -43807550 + AluYa5 SINE Alu 1 299 -12 1054 134 41 0 chr13 58065696 58065867 -43807302 - AluJb SINE Alu -15 297 120 2263 99 0 60 chr13 58065869 58066202 -43806967 - AluSq SINE Alu 0 313 1 208 327 60 20 chr13 58066276 58066426 -43806743 + MIR3 SINE MIR 26 181 -27 212 0 36 0 chr13 58066974 58067002 -43806167 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1777 139 38 4 chr13 58067005 58067272 -43805897 - AluSx SINE Alu -36 276 1 21 0 0 0 chr13 58067281 58067302 -43805867 + AT_rich Low_complexity Low_complexity 1 21 0 1013 184 18 0 chr13 58067369 58067532 -43805637 + FRAM SINE Alu 1 166 0 2017 135 0 0 chr13 58067629 58067917 -43805252 + AluSx SINE Alu 25 312 0 201 153 17 34 chr13 58068197 58068256 -43804913 + (TTA)n Simple_repeat Simple_repeat 1 58 0 5574 118 19 5 chr13 58068257 58069084 -43804085 + Tigger1 DNA MER2_type 1580 2418 0 204 40 0 0 chr13 58069310 58069335 -43803834 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1611 166 0 15 chr13 58069348 58069487 -43803682 - AluJo SINE Alu -40 272 137 2264 110 3 13 chr13 58069487 58069797 -43803372 - AluSq SINE Alu -6 307 1 1611 166 0 15 chr13 58069797 58069922 -43803247 - AluJo SINE Alu -175 137 12 609 189 0 0 chr13 58069981 58070076 -43803093 + FLAM_A SINE Alu 18 112 -30 2288 89 3 0 chr13 58070314 58070607 -43802562 - AluSg SINE Alu -16 294 1 1524 162 0 112 chr13 58070888 58071227 -43801942 + AluJo SINE Alu 1 301 -11 1188 161 44 19 chr13 58071619 58071824 -43801345 - AluJb SINE Alu -17 295 86 364 286 128 46 chr13 58072232 58072561 -43800608 + L2 LINE L2 1677 2032 -1282 470 249 66 41 chr13 58072561 58072758 -43800411 - MLT1K LTR MaLR 0 588 387 237 300 133 0 chr13 58072920 58073010 -43800159 - MLT1L LTR MaLR -424 191 90 768 311 55 31 chr13 58073082 58073465 -43799704 + L2 LINE L2 2027 2418 -896 811 140 0 22 chr13 58073680 58073816 -43799353 - AluJb SINE Alu -179 133 1 2464 88 0 0 chr13 58073896 58074201 -43798968 + AluSx SINE Alu 3 307 -5 198 269 30 45 chr13 58074202 58074269 -43798900 + L2 LINE L2 3205 3270 -2 1833 166 14 0 chr13 58074275 58074577 -43798592 - AluJo SINE Alu 0 306 1 43 47 0 0 chr13 58075403 58075467 -43797702 + AT_rich Low_complexity Low_complexity 1 64 0 919 242 8 19 chr13 58075498 58075754 -43797415 - L1M3c LINE L1 -4566 1575 1323 5965 80 57 45 chr13 58125760 58126023 -43747146 + Tigger3b DNA MER2_type 277 535 -2493 2149 125 0 10 chr13 58126023 58126319 -43746850 - AluSx SINE Alu -19 293 1 5965 80 57 45 chr13 58126319 58126566 -43746603 + Tigger3b DNA MER2_type 535 777 -2251 2392 82 0 13 chr13 58126566 58126872 -43746297 + AluSg SINE Alu 1 302 -8 5965 80 57 45 chr13 58126872 58127068 -43746101 + Tigger3b DNA MER2_type 777 969 -2059 852 170 0 30 chr13 58127068 58127203 -43745966 - FLAM_C SINE Alu -2 131 1 5965 80 57 45 chr13 58127203 58127348 -43745821 + Tigger3b DNA MER2_type 969 1146 -1882 2309 147 6 15 chr13 58127348 58127688 -43745481 - MER1B DNA MER1_type 0 337 1 5965 80 57 45 chr13 58127688 58127776 -43745393 + Tigger3b DNA MER2_type 1146 1231 0 699 317 92 0 chr13 58127776 58128060 -43745109 - LTR16A LTR ERVL -140 310 1 279 0 0 0 chr13 58128233 58128264 -43744905 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1977 121 4 7 chr13 58128266 58128546 -43744623 - AluSx SINE Alu -33 279 1 224 361 101 5 chr13 58129063 58129127 -43744042 - L2 LINE L2 -417 2897 2841 2216 115 0 3 chr13 58129127 58129431 -43743738 - AluSx SINE Alu -8 304 2 224 361 101 5 chr13 58129431 58129574 -43743595 - L2 LINE L2 -473 2841 2670 346 307 46 52 chr13 58129809 58129962 -43743207 + MIR SINE MIR 92 243 -19 1939 129 11 3 chr13 58130039 58130325 -43742844 + AluSx SINE Alu 6 293 -19 225 67 0 0 chr13 58130329 58130374 -43742795 - LTR66 LTR ERVL -172 438 394 228 200 0 0 chr13 58130383 58130438 -43742731 + (TA)n Simple_repeat Simple_repeat 1 55 0 2027 129 3 29 chr13 58130633 58130943 -43742226 - AluSx SINE Alu -10 302 1 194 328 64 40 chr13 58131025 58131122 -43742047 - L2 LINE L2 -188 3084 2982 1219 229 96 13 chr13 58131122 58131436 -43741733 + MER58B DNA MER1_type 2 341 0 194 328 64 40 chr13 58131436 58131463 -43741706 - L2 LINE L2 -290 2982 2957 1702 171 0 33 chr13 58131881 58132180 -43740989 + AluJo SINE Alu 1 289 -23 228 217 0 17 chr13 58132184 58132244 -43740925 + L1MCa LINE L1 2006 2064 -4362 * 249 247 11 0 chr13 58132211 58132307 -43740862 + L1MC4 LINE L1 6879 6926 -1139 226 258 19 39 chr13 58132217 58132373 -43740796 - L1MC3 LINE L1 -1139 6703 6543 * 555 258 0 0 chr13 58132386 58132541 -43740628 + (TG)n Simple_repeat Simple_repeat 2 156 0 2333 97 0 3 chr13 58132832 58133131 -43740038 - AluSq SINE Alu -15 298 1 2272 169 12 26 chr13 58133150 58133508 -43739661 + MLT2D LTR ERVL 1 354 -60 342 0 0 0 chr13 58133508 58133546 -43739623 + (TC)n Simple_repeat Simple_repeat 1 38 0 2272 169 12 26 chr13 58133546 58133607 -43739562 + MLT2D LTR ERVL 354 414 0 458 329 13 0 chr13 58133726 58133875 -43739294 - MER117 DNA MER1_type -36 161 11 747 182 76 40 chr13 58134369 58134644 -43738525 - L1MC5 LINE L1 -34 7927 7643 364 21 0 0 chr13 58134644 58134691 -43738478 - L1PA2 LINE L1 -2 6153 6107 459 304 78 76 chr13 58135865 58136260 -43736909 - MLT1K LTR MaLR -7 581 186 256 28 0 0 chr13 58136480 58136516 -43736653 + AluY SINE Alu 260 295 -6 1158 91 7 0 chr13 58136945 58137088 -43736081 + U4 snRNA snRNA 1 144 -1 670 274 52 91 chr13 58137259 58137345 -43735824 - L2 LINE L2 -590 2724 2636 4427 144 23 66 chr13 58137345 58138218 -43734951 - L1MA4A LINE L1 -1 6302 5468 670 274 52 91 chr13 58138218 58138572 -43734597 - L2 LINE L2 -678 2636 2301 1820 156 0 52 chr13 58138602 58138941 -43734228 - AluJo SINE Alu 0 322 1 1503 206 34 58 chr13 58139012 58139390 -43733779 - MER93b LTR ERV1 0 373 5 251 263 84 63 chr13 58139930 58140025 -43733144 + L2 LINE L2 3207 3303 -10 23 54 0 0 chr13 58140153 58140190 -43732979 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 58140297 58140319 -43732850 + AT_rich Low_complexity Low_complexity 1 22 0 228 336 84 28 chr13 58141002 58141109 -43732060 + L2 LINE L2 2958 3070 -202 2153 101 10 7 chr13 58141168 58141465 -43731704 - AluSq SINE Alu -15 298 1 1594 188 16 10 chr13 58141585 58141894 -43731275 - AluJb SINE Alu -1 311 1 904 301 114 39 chr13 58142027 58142452 -43730717 - HAL1 LINE L1 -589 1918 1438 2094 128 3 0 chr13 58142452 58142749 -43730420 - AluSx SINE Alu -14 298 1 904 301 114 39 chr13 58142749 58142892 -43730277 - HAL1 LINE L1 -1069 1438 1307 380 145 0 0 chr13 58142900 58142962 -43730207 - L1MB8 LINE L1 -11 6167 6106 2177 99 14 0 chr13 58143351 58143644 -43729525 + AluSg SINE Alu 1 297 -13 1860 172 3 3 chr13 58143645 58143942 -43729227 + AluJo SINE Alu 2 298 -14 225 178 0 0 chr13 58144563 58144608 -43728561 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr13 58145309 58145332 -43727837 + (T)n Simple_repeat Simple_repeat 1 23 0 2132 106 10 30 chr13 58145534 58145836 -43727333 + AluSp SINE Alu 2 297 -16 5553 112 9 4 chr13 58147370 58148033 -43725136 - L1PA13 LINE L1 0 6163 5494 1897 167 3 0 chr13 58148033 58148339 -43724830 - AluSx SINE Alu -5 307 1 5553 112 9 4 chr13 58148339 58148485 -43724684 - L1PA13 LINE L1 -669 5494 5350 258 100 0 0 chr13 58148754 58148794 -43724375 - L1MB5 LINE L1 -8 6166 6127 800 161 8 15 chr13 58148807 58148937 -43724232 - FLAM_C SINE Alu -14 129 1 1329 163 223 7 chr13 58148939 58149222 -43723947 - L1MB5 LINE L1 -34 6140 5797 243 335 67 11 chr13 58149833 58149943 -43723226 + MIR SINE MIR 3 121 -87 229 182 0 0 chr13 58150047 58150091 -43723078 + (CGGGG)n Simple_repeat Simple_repeat 3 46 0 651 199 76 15 chr13 58150995 58151126 -43722043 + AluJo SINE Alu 37 175 -137 2181 128 0 0 chr13 58151144 58151449 -43721720 + AluSx SINE Alu 1 305 -7 395 19 19 0 chr13 58151449 58151501 -43721668 + (CA)n Simple_repeat Simple_repeat 2 54 0 253 83 0 0 chr13 58151633 58151669 -43721500 - L1MA9 LINE L1 -8 6304 6269 921 171 11 11 chr13 58151669 58151845 -43721324 - AluJo SINE Alu -14 298 123 1313 102 88 0 chr13 58151854 58152059 -43721110 - L1MA9 LINE L1 -60 6252 6030 27 0 0 0 chr13 58152352 58152379 -43720790 + AT_rich Low_complexity Low_complexity 1 27 0 594 143 111 32 chr13 58152445 58152571 -43720598 + L1MD3 LINE L1 7745 7880 -115 472 311 130 27 chr13 58152778 58153077 -43720092 + L2 LINE L2 2345 2674 -640 1235 140 5 0 chr13 58153865 58154051 -43719118 + AluJb SINE Alu 113 299 -13 438 192 10 50 chr13 58154051 58154150 -43719019 + L1MD3 LINE L1 7884 7978 -17 636 72 72 0 chr13 58154150 58154375 -43718794 + (TA)n Simple_repeat Simple_repeat 1 241 0 189 107 0 0 chr13 58154486 58154514 -43718655 + (A)n Simple_repeat Simple_repeat 1 28 0 210 118 0 0 chr13 58154698 58154732 -43718437 + (TG)n Simple_repeat Simple_repeat 2 35 0 270 240 120 0 chr13 58155183 58155258 -43717911 + MLT1K LTR MaLR 157 240 -348 1988 128 7 3 chr13 58155339 58155621 -43717548 + AluSx SINE Alu 1 283 -29 197 81 0 27 chr13 58155625 58155662 -43717507 + (CAAA)n Simple_repeat Simple_repeat 4 39 0 204 143 0 61 chr13 58155751 58155800 -43717369 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 282 143 0 0 chr13 58155899 58155948 -43717221 + (CA)n Simple_repeat Simple_repeat 2 50 0 594 266 14 98 chr13 58156063 58156170 -43716999 - MIR SINE MIR -2 260 146 1831 156 7 20 chr13 58156170 58156471 -43716698 - AluJb SINE Alu -15 297 1 594 266 14 98 chr13 58156471 58156638 -43716531 - MIR SINE MIR -116 146 9 2204 124 0 0 chr13 58156971 58157270 -43715899 - AluSx SINE Alu -13 299 1 350 188 0 0 chr13 58157359 58157423 -43715746 + MLT1G1 LTR MaLR 20 83 -459 1397 128 0 18 chr13 58157528 58157747 -43715422 - AluJo SINE Alu -13 299 85 375 304 43 12 chr13 58157756 58157917 -43715252 + MLT1G1 LTR MaLR 246 411 -184 265 289 36 0 chr13 58157967 58158050 -43715119 + MLT1G1 LTR MaLR 460 545 -4 299 337 55 11 chr13 58158234 58158415 -43714754 + L2 LINE L2 2338 2526 -788 2346 78 0 0 chr13 58158868 58159149 -43714020 + AluSg SINE Alu 1 281 -29 207 32 32 0 chr13 58159149 58159180 -43713989 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 315 254 25 182 chr13 58159345 58159561 -43713608 - MER91A DNA MER1_type 0 196 15 283 296 102 2 chr13 58159654 58159805 -43713364 + MIR SINE MIR 20 183 -25 217 321 36 18 chr13 58159930 58160042 -43713127 + MIR SINE MIR 98 211 -51 2411 96 0 0 chr13 58160264 58160567 -43712602 + AluSx SINE Alu 1 303 -9 399 284 75 0 chr13 58161503 58161637 -43711532 - L2 LINE L2 -2 3311 3168 1143 193 0 50 chr13 58161637 58161876 -43711293 + AluJo SINE Alu 81 307 -5 954 256 45 29 chr13 58161926 58162391 -43710778 - L2 LINE L2 -263 3050 2578 887 209 0 0 chr13 58162463 58162616 -43710553 + FRAM SINE Alu 1 152 -24 2154 112 27 3 chr13 58162619 58162914 -43710255 + AluSx SINE Alu 1 302 -10 1806 173 3 16 chr13 58163250 58163557 -43709612 + AluJb SINE Alu 1 303 -9 207 184 0 0 chr13 58165341 58165379 -43707790 + T-rich Low_complexity Low_complexity 3 40 0 2380 104 0 0 chr13 58165767 58166074 -43707095 - AluSx SINE Alu -5 307 1 225 0 0 0 chr13 58166745 58166770 -43706399 + (T)n Simple_repeat Simple_repeat 1 25 0 218 221 50 57 chr13 58167306 58167399 -43705770 - MIR SINE MIR -75 133 34 1709 118 133 11 chr13 58167894 58168165 -43705004 - AluSg1 SINE Alu -5 304 1 1044 113 13 134 chr13 58168404 58168643 -43704526 - MER20 DNA MER1_type -8 211 2 314 257 50 50 chr13 58168794 58168895 -43704274 + L2 LINE L2 3169 3269 -3 1288 262 215 13 chr13 58169781 58170651 -43702518 + L2 LINE L2 2262 3313 0 344 211 14 0 chr13 58170762 58170833 -43702336 + MER69 DNA AcHobo 2455 2526 0 261 0 0 0 chr13 58171019 58171048 -43702121 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2152 118 0 3 chr13 58171094 58171391 -43701778 - AluY SINE Alu -15 296 1 1985 137 3 11 chr13 58171445 58171757 -43701412 + AluSx SINE Alu 1 310 0 978 183 18 0 chr13 58171862 58172031 -43701138 + FAM SINE Alu 1 172 -3 607 170 0 0 chr13 58172442 58172536 -43700633 - AluJ/FLAM SINE Alu -213 99 6 2329 96 3 0 chr13 58172976 58173277 -43699892 - AluSc SINE Alu -7 302 1 309 155 0 0 chr13 58173501 58173559 -43699610 + (TG)n Simple_repeat Simple_repeat 2 59 0 437 208 10 10 chr13 58173721 58173817 -43699352 + MLT1C LTR MaLR 35 130 -337 900 151 0 27 chr13 58173817 58173963 -43699206 + FLAM_C SINE Alu 1 142 -1 1595 107 0 0 chr13 58174079 58174285 -43698884 - AluSx SINE Alu -106 206 1 1087 189 0 5 chr13 58174285 58174481 -43698688 - L1M2a LINE L1 -6973 195 1 2395 94 0 0 chr13 58174522 58174829 -43698340 - AluSq SINE Alu -6 307 1 2035 151 3 3 chr13 58174915 58175226 -43697943 + AluSx SINE Alu 1 311 -1 1668 159 22 4 chr13 58175277 58175575 -43697594 - AluJb SINE Alu 0 303 1 360 324 67 27 chr13 58176087 58176312 -43696857 + L2 LINE L2 2988 3221 -92 680 255 8 114 chr13 58176316 58176377 -43696792 - L1MD2 LINE L1 -1 6358 6292 2144 108 0 35 chr13 58176377 58176692 -43696477 + AluSq SINE Alu 1 304 -9 680 255 8 114 chr13 58176692 58177007 -43696162 - L1MD2 LINE L1 -67 6292 6022 366 253 0 0 chr13 58177009 58177092 -43696077 + L2 LINE L2 3224 3306 -7 267 103 0 0 chr13 58177371 58177410 -43695759 + (TG)n Simple_repeat Simple_repeat 2 40 0 2171 135 3 3 chr13 58178250 58178561 -43694608 - AluSx SINE Alu -1 311 1 1227 191 113 21 chr13 58178772 58178919 -43694250 - AluJo SINE Alu -2 310 178 2187 131 0 0 chr13 58178919 58179216 -43693953 - AluSq SINE Alu -16 297 1 1227 191 113 21 chr13 58179216 58179351 -43693818 - AluJo SINE Alu -134 178 2 2422 100 3 0 chr13 58181409 58181720 -43691449 - AluSp SINE Alu -1 312 1 2255 123 0 0 chr13 58181931 58182263 -43690906 + AluSx SINE Alu 1 312 0 2329 109 0 0 chr13 58182419 58182722 -43690447 - AluSx SINE Alu -9 303 1 209 333 0 0 chr13 58182776 58182839 -43690330 - L3 LINE CR1 -2 1575 1513 385 300 71 59 chr13 58183295 58183632 -43689537 - L3 LINE CR1 -154 1423 1083 23 0 0 0 chr13 58183714 58183737 -43689432 + AT_rich Low_complexity Low_complexity 1 23 0 273 353 185 19 chr13 58183923 58184540 -43688629 + L2 LINE L2 1912 2630 -684 316 343 17 69 chr13 58184833 58185008 -43688161 + L2 LINE L2 3107 3272 0 201 119 0 48 chr13 58185145 58185187 -43687982 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 196 238 0 0 chr13 58185265 58185307 -43687862 - L2 LINE L2 -17 3255 3214 311 233 0 0 chr13 58185318 58185378 -43687791 - MER94 DNA DNA -4 130 71 2577 50 7 0 chr13 58186019 58186320 -43686849 + AluY SINE Alu 1 303 -8 2222 108 3 3 chr13 58186334 58186640 -43686529 + AluSx SINE Alu 6 311 -1 422 209 16 70 chr13 58186751 58186880 -43686289 + FLAM_C SINE Alu 21 142 -1 304 226 176 0 chr13 58187675 58187777 -43685392 - MIR SINE MIR -59 149 30 2103 140 0 9 chr13 58187929 58188244 -43684925 - AluSx SINE Alu 0 312 1 1014 141 0 0 chr13 58188244 58188386 -43684783 - AluSq/x SINE Alu -171 142 1 2228 139 0 0 chr13 58188663 58188973 -43684196 + AluSx SINE Alu 1 310 -2 409 138 75 38 chr13 58189026 58189106 -43684063 - AluJ/FRAM SINE Alu -3 299 232 560 146 173 0 chr13 58189123 58189233 -43683936 - FLAM_C SINE Alu -4 129 1 6959 184 20 28 chr13 58189313 58191453 -43681716 + L1PA15 LINE L1 4019 6165 0 2208 110 6 25 chr13 58191536 58191854 -43681315 - AluSx SINE Alu 0 312 1 2252 102 0 10 chr13 58192292 58192596 -43680573 + AluSx SINE Alu 1 301 -11 2263 135 14 43 chr13 58192631 58193052 -43680117 + L1M2a LINE L1 1825 2233 -4935 252 0 0 0 chr13 58193819 58193847 -43679322 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2221 95 0 3 chr13 58193850 58194135 -43679034 - AluSc SINE Alu -25 284 1 1795 171 7 0 chr13 58194677 58194979 -43678190 + AluJb SINE Alu 5 308 0 2287 101 0 10 chr13 58195822 58196128 -43677041 + AluSc SINE Alu 1 303 -6 273 170 131 92 chr13 58196147 58196300 -43676869 + L1ME LINE L1 5640 5801 -320 330 299 153 32 chr13 58196536 58196902 -43676267 - L2 LINE L2 -256 3057 2637 2380 104 0 0 chr13 58196955 58197254 -43675915 + AluSg SINE Alu 1 299 -11 215 245 31 82 chr13 58197438 58197536 -43675633 + MIR SINE MIR 100 192 -70 1920 157 33 0 chr13 58198036 58198335 -43674834 - AluJo SINE Alu -3 309 1 210 71 0 0 chr13 58198632 58198660 -43674509 + (T)n Simple_repeat Simple_repeat 1 28 0 316 272 0 25 chr13 58199741 58199822 -43673347 - MER5A DNA MER1_type -45 144 66 2210 127 0 0 chr13 58199822 58200122 -43673047 - AluSx SINE Alu -12 300 1 182 233 133 33 chr13 58200674 58200764 -43672405 + L2 LINE L2 3167 3265 -7 2170 103 41 0 chr13 58201028 58201319 -43671850 + AluSx SINE Alu 1 303 -9 353 355 120 34 chr13 58201328 58201652 -43671517 - MLT1K LTR MaLR -109 479 128 307 211 7 125 chr13 58201918 58202070 -43671099 - L2 LINE L2 -61 3252 3119 1759 148 10 41 chr13 58202274 58202584 -43670585 - AluJo SINE Alu 0 301 1 246 264 195 0 chr13 58202695 58202782 -43670387 + L2 LINE L2 3169 3272 0 2168 91 7 3 chr13 58203089 58203374 -43669795 + AluSp SINE Alu 14 299 -14 336 291 35 57 chr13 58203418 58203645 -43669524 - L2 LINE L2 -390 2924 2703 328 286 135 42 chr13 58203674 58204030 -43669139 + L2 LINE L2 2571 2959 -355 1229 180 58 37 chr13 58204367 58204662 -43668507 + AluJb SINE Alu 1 301 -11 2342 113 0 10 chr13 58204731 58205040 -43668129 - AluSx SINE Alu -6 306 1 21 0 0 0 chr13 58206212 58206233 -43666936 + AT_rich Low_complexity Low_complexity 1 21 0 2139 119 27 0 chr13 58206597 58206891 -43666278 - AluSx SINE Alu -10 302 1 185 296 0 0 chr13 58207703 58207757 -43665412 + MER5A DNA MER1_type 136 189 0 2110 122 14 3 chr13 58207908 58208204 -43664965 - AluJb SINE Alu -2 310 12 699 181 50 106 chr13 58208301 58208449 -43664720 - MER5A DNA MER1_type 0 189 53 2085 165 10 37 chr13 58208449 58208850 -43664319 - MLT1B LTR MaLR 0 390 1 699 181 50 106 chr13 58208850 58208900 -43664269 - MER5A DNA MER1_type -136 53 2 795 89 0 9 chr13 58209496 58209608 -43663561 + HY1 scRNA scRNA 1 111 -1 1974 159 41 46 chr13 58209989 58210413 -43662756 - THE1B LTR MaLR 0 428 1 420 182 0 0 chr13 58211441 58211507 -43661662 - FAM SINE Alu -26 159 94 983 300 39 24 chr13 58211595 58212062 -43661107 - MLT1J LTR MaLR 0 511 38 1858 148 40 0 chr13 58212133 58212430 -43660739 + AluSx SINE Alu 1 309 -3 259 306 0 0 chr13 58212527 58212589 -43660580 - L2 LINE L2 -217 3055 2994 284 280 224 0 chr13 58212675 58212818 -43660351 + MER96 DNA MER1_type? 1 175 0 1109 232 60 46 chr13 58213700 58213985 -43659184 - AluJo SINE Alu -10 292 4 667 326 155 30 chr13 58214003 58214159 -43659010 - L3 LINE CR1 -89 1488 1353 1739 173 33 7 chr13 58214159 58214460 -43658709 - AluJo SINE Alu -3 309 1 667 326 155 30 chr13 58214460 58214741 -43658428 - L3 LINE CR1 -224 1353 996 377 141 14 0 chr13 58214745 58214816 -43658353 + CT-rich Low_complexity Low_complexity 1 72 0 251 120 0 40 chr13 58214951 58215001 -43658168 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 1677 162 16 40 chr13 58215001 58215304 -43657865 - AluJo SINE Alu -11 301 6 27 29 0 0 chr13 58215368 58215402 -43657767 + AT_rich Low_complexity Low_complexity 1 34 0 456 382 4 12 chr13 58215470 58215724 -43657445 - L3 LINE CR1 -657 920 669 1995 134 0 13 chr13 58215724 58216023 -43657146 - AluSx SINE Alu -17 295 1 2150 142 0 3 chr13 58216035 58216345 -43656824 - AluSq SINE Alu -4 309 1 209 390 44 15 chr13 58216443 58216579 -43656590 + L2 LINE L2 2914 3053 -219 860 176 53 88 chr13 58216790 58217017 -43656152 + MER20 DNA MER1_type 1 219 0 582 215 0 23 chr13 58218782 58218912 -43654257 - FLAM_C SINE Alu -16 127 1 2227 122 0 0 chr13 58218938 58219234 -43653935 - AluSx SINE Alu -16 296 1 313 286 105 8 chr13 58219234 58219367 -43653802 - MIR SINE MIR -114 148 3 201 326 109 22 chr13 58219924 58220062 -43653107 - MIR SINE MIR -71 191 42 242 236 0 0 chr13 58220246 58220301 -43652868 + T-rich Low_complexity Low_complexity 1 55 0 442 283 40 79 chr13 58220607 58220712 -43652457 - L1MEc LINE L1 -3195 3020 2912 2069 110 20 3 chr13 58220712 58221011 -43652158 - AluSx SINE Alu -8 304 1 442 283 40 79 chr13 58221011 58221255 -43651914 - L1MEc LINE L1 -3303 2912 2660 1624 167 89 3 chr13 58221255 58221537 -43651632 - AluJb SINE Alu -6 306 1 442 283 40 79 chr13 58221537 58221886 -43651283 - L1MEc LINE L1 -3555 2660 2348 225 183 17 17 chr13 58221947 58222007 -43651162 - L1MEc LINE L1 -4089 2307 2248 229 64 64 0 chr13 58222706 58222753 -43650416 + T-rich Low_complexity Low_complexity 1 50 0 2095 137 0 0 chr13 58223236 58223536 -43649633 + AluSx SINE Alu 1 300 -12 2146 116 0 49 chr13 58224473 58224801 -43648368 + AluSx SINE Alu 1 312 0 1339 258 118 80 chr13 58224830 58225320 -43647849 + MLT1G LTR MaLR 16 510 -80 468 283 177 5 chr13 58225418 58225616 -43647553 + MIR SINE MIR 12 243 -19 294 277 89 27 chr13 58225820 58225932 -43647237 + L2 LINE L2 3191 3309 -4 2286 99 3 10 chr13 58225954 58226256 -43646913 + AluSx SINE Alu 1 300 -12 2303 71 3 7 chr13 58226400 58226697 -43646472 - AluY SINE Alu -15 296 1 21 36 0 0 chr13 58227262 58227290 -43645879 + AT_rich Low_complexity Low_complexity 1 28 0 395 290 53 18 chr13 58227405 58227574 -43645595 - MLT1I LTR MaLR -191 218 44 812 122 0 0 chr13 58227575 58227690 -43645479 + AluSc SINE Alu 175 289 -20 2297 101 0 3 chr13 58229449 58229745 -43643424 + AluSx SINE Alu 1 295 -17 392 361 178 11 chr13 58229824 58230387 -43642782 - L2 LINE L2 -337 2977 2321 282 326 43 0 chr13 58230394 58230486 -43642683 - MIR SINE MIR 0 262 167 262 143 0 0 chr13 58230502 58230544 -43642625 - HsTC2 DNA Tc2 -3 1895 1854 * 272 203 149 0 chr13 58230516 58230590 -43642579 - HsTC2 DNA Tc2 -1811 87 3 497 190 100 0 chr13 58230592 58230692 -43642477 - MIR SINE MIR -111 151 42 195 308 90 13 chr13 58230709 58230787 -43642382 - MIR SINE MIR -174 88 5 258 177 97 16 chr13 58230793 58230855 -43642314 - L2 LINE L2 -1023 2291 2225 301 230 127 16 chr13 58232633 58232759 -43640410 - MLT1J LTR MaLR -49 462 323 207 114 0 0 chr13 58233727 58233762 -43639407 + (A)n Simple_repeat Simple_repeat 1 35 0 2006 145 3 0 chr13 58236122 58236412 -43636757 + AluSq SINE Alu 1 291 -22 295 276 31 20 chr13 58236854 58236952 -43636217 - MIR3 SINE MIR -9 199 101 2123 133 0 0 chr13 58238532 58238833 -43634336 + AluSx SINE Alu 1 301 -11 1515 172 48 4 chr13 58239059 58239327 -43633842 - AluSx SINE Alu -32 280 1 1966 115 24 10 chr13 58240050 58240346 -43632823 - AluSx SINE Alu 0 312 13 569 111 0 30 chr13 58240346 58240445 -43632724 + AluY SINE Alu 215 310 -1 225 366 65 0 chr13 58241087 58241180 -43631989 + MIR SINE MIR 37 135 -73 211 174 22 0 chr13 58241728 58241774 -43631395 + L3b LINE CR1 1273 1319 -264 * 221 317 71 98 chr13 58241750 58241974 -43631195 + L2 LINE L2 3046 3263 -9 391 314 114 29 chr13 58241982 58242192 -43630977 + L3b LINE CR1 1332 1559 -24 201 283 0 17 chr13 58243401 58243461 -43629708 - L2 LINE L2 -7 3265 3207 1095 173 53 4 chr13 58243646 58243912 -43629257 + MER33 DNA MER1_type 9 287 -37 267 196 0 0 chr13 58243970 58244016 -43629153 + MER33 DNA MER1_type 318 363 0 184 377 0 13 chr13 58244214 58244291 -43628878 - L2 LINE L2 -10 3262 3187 6094 148 53 28 chr13 58244494 58244788 -43628381 - Tigger3b DNA MER2_type -1797 1231 946 2208 122 119 10 chr13 58244788 58245174 -43627995 - MSTA LTR MaLR 0 428 1 6094 148 53 28 chr13 58245174 58245265 -43627904 - Tigger3b DNA MER2_type -2082 946 859 1652 174 51 0 chr13 58245265 58245559 -43627610 - AluJo SINE Alu -3 309 1 6094 148 53 28 chr13 58245559 58245818 -43627351 - Tigger3b DNA MER2_type -2169 859 608 234 0 0 0 chr13 58245818 58245844 -43627325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 6094 148 53 28 chr13 58245844 58246397 -43626772 - Tigger3b DNA MER2_type -2420 608 1 508 251 22 45 chr13 58246572 58246751 -43626418 - MLT1K LTR MaLR -122 466 292 2041 138 0 0 chr13 58248667 58248988 -43624181 + AluSx SINE Alu 1 321 0 21 0 0 0 chr13 58249577 58249598 -43623571 + AT_rich Low_complexity Low_complexity 1 21 0 372 43 0 0 chr13 58250637 58250683 -43622486 + (TG)n Simple_repeat Simple_repeat 2 47 0 185 311 104 28 chr13 58251620 58251726 -43621443 - L2 LINE L2 -671 2643 2530 921 189 122 22 chr13 58251801 58252161 -43621008 - MER69B DNA AcHobo -14 1212 817 2029 157 3 25 chr13 58252203 58252437 -43620732 + MLT1A1 LTR MaLR 10 235 -130 2357 123 16 16 chr13 58252437 58252812 -43620357 - THE1C LTR MaLR 0 375 1 2029 157 3 25 chr13 58252812 58252941 -43620228 + MLT1A1 LTR MaLR 235 365 0 1507 238 108 52 chr13 58252941 58253398 -43619771 - MER69B DNA AcHobo -467 759 250 1046 201 43 0 chr13 58253398 58253607 -43619562 - MER20 DNA MER1_type 0 219 2 1507 238 108 52 chr13 58253607 58253825 -43619344 - MER69B DNA AcHobo -976 250 46 903 133 0 90 chr13 58254356 58254522 -43618647 - AluJo/FRAM SINE Alu -8 304 154 514 188 10 10 chr13 58254522 58254623 -43618546 - AluJ/FLAM SINE Alu -211 101 1 22 35 0 0 chr13 58254662 58254691 -43618478 + AT_rich Low_complexity Low_complexity 1 29 0 408 241 103 9 chr13 58255052 58255168 -43618001 - L2 LINE L2 0 3313 3187 657 310 99 16 chr13 58255597 58255839 -43617330 - MIR SINE MIR 0 262 1 267 241 25 13 chr13 58256060 58256139 -43617030 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 432 130 0 0 chr13 58257130 58257199 -43615970 + (GGGA)n Simple_repeat Simple_repeat 4 72 0 28 61 0 0 chr13 58257953 58258002 -43615167 + AT_rich Low_complexity Low_complexity 1 49 0 7096 187 20 8 chr13 58258167 58258929 -43614240 + L1MB2 LINE L1 3667 4419 -1752 2203 158 59 5 chr13 58258929 58259333 -43613836 + MSTB LTR MaLR 1 426 0 7096 187 20 8 chr13 58259333 58261040 -43612129 + L1MB2 LINE L1 4419 6164 -7 186 103 0 0 chr13 58261782 58261811 -43611358 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 646 328 66 31 chr13 58262671 58263184 -43609985 + L1MC4a LINE L1 5408 5938 -1870 470 253 100 75 chr13 58264452 58264946 -43608223 - MLT1J LTR MaLR -6 609 3 1462 228 40 8 chr13 58265595 58265972 -43607197 + MLT1C LTR MaLR 35 423 -44 2162 167 59 8 chr13 58266122 58266512 -43606657 - MSTA LTR MaLR 0 428 19 2355 92 3 0 chr13 58267399 58267702 -43605467 + AluSp SINE Alu 1 304 -9 216 0 0 0 chr13 58268676 58268700 -43604469 + (T)n Simple_repeat Simple_repeat 1 24 0 234 107 143 18 chr13 58268818 58268874 -43604295 - MER91 DNA MER1_type 0 140 78 257 321 62 18 chr13 58269091 58269203 -43603966 + L2 LINE L2 3175 3291 -22 2331 80 3 7 chr13 58269276 58269575 -43603594 - AluSx SINE Alu -14 298 1 228 227 0 0 chr13 58270619 58270663 -43602506 + L2 LINE L2 3265 3308 -5 364 267 23 46 chr13 58272647 58272778 -43600391 + MIR3 SINE MIR 78 205 -3 421 327 148 15 chr13 58273143 58273345 -43599824 + MIR SINE MIR 22 250 -12 1082 192 57 85 chr13 58275178 58275308 -43597861 + MER2 DNA MER2_type 1 133 -211 1402 250 0 0 chr13 58275308 58275469 -43597700 - AluJo SINE Alu -20 292 129 420 20 0 0 chr13 58275469 58275518 -43597651 + (TG)n Simple_repeat Simple_repeat 2 50 0 1402 250 0 0 chr13 58275518 58275648 -43597521 - AluJo SINE Alu -182 130 1 1082 192 57 85 chr13 58275648 58275871 -43597298 + MER2 DNA MER2_type 133 344 0 418 278 91 34 chr13 58276537 58276713 -43596456 + MER5A DNA MER1_type 4 189 0 827 178 0 92 chr13 58276718 58276903 -43596266 + AluJb SINE Alu 137 304 -8 1729 163 0 4 chr13 58277199 58277475 -43595694 - AluJb SINE Alu -20 292 18 861 110 0 59 chr13 58277510 58277646 -43595523 - FLAM_C SINE Alu -5 128 1 1356 267 57 5 chr13 58277647 58278209 -43594960 + MER114 LTR ERV 57 647 -1 2247 91 7 32 chr13 58278510 58278819 -43594350 - AluSx SINE Alu -11 301 1 1854 164 3 20 chr13 58279040 58279344 -43593825 - AluSp SINE Alu -14 299 1 345 212 0 0 chr13 58280464 58280530 -43592639 + MER94 DNA DNA 69 134 0 235 291 0 70 chr13 58280550 58280636 -43592533 - L2 LINE L2 -1549 1765 1686 182 338 153 18 chr13 58280832 58281060 -43592109 - L2 LINE L2 -1106 2208 1950 204 345 60 43 chr13 58281131 58281363 -43591806 - L2 LINE L2 -1535 1779 1544 246 265 94 65 chr13 58281387 58281557 -43591612 + L2 LINE L2 3135 3309 -4 443 217 8 101 chr13 58282046 58282112 -43591057 + L2 LINE L2 3189 3239 -74 2017 142 20 43 chr13 58282112 58282464 -43590705 + MER2 DNA MER2_type 1 344 0 443 217 8 101 chr13 58282464 58282526 -43590643 + L2 LINE L2 3239 3305 -8 1922 216 82 7 chr13 58282737 58283177 -43589992 + MLT2B1 LTR ERVL 6 478 -42 317 131 16 0 chr13 58283177 58283238 -43589931 + (TCTA)n Simple_repeat Simple_repeat 2 63 0 242 132 0 145 chr13 58283254 58283330 -43589839 + MLT2B1 LTR ERVL 456 520 0 248 240 0 0 chr13 58283645 58283695 -43589474 - L2 LINE L2 -1 3312 3263 2235 98 3 7 chr13 58283940 58284237 -43588932 - AluSq SINE Alu -17 296 1 280 153 130 66 chr13 58284308 58284423 -43588746 + MER34 LTR ERV1 433 537 -5 869 257 45 5 chr13 58284567 58284769 -43588400 + MIR SINE MIR 43 252 -10 286 329 143 39 chr13 58285313 58285544 -43587625 - MIR SINE MIR 0 262 8 192 143 0 0 chr13 58285816 58285835 -43587334 + (TCC)n Simple_repeat Simple_repeat 3 24 -13 1866 171 20 0 chr13 58285835 58286134 -43587035 - AluJo SINE Alu -7 305 1 192 143 0 0 chr13 58286134 58286149 -43587020 + (TCC)n Simple_repeat Simple_repeat 23 37 0 213 88 70 0 chr13 58287798 58287855 -43585314 + T-rich Low_complexity Low_complexity 1 61 0 492 283 63 80 chr13 58287855 58288281 -43584888 - MLT1K LTR MaLR -17 571 70 1924 138 3 10 chr13 58288334 58288630 -43584539 - AluSq SINE Alu -19 294 1 298 303 114 14 chr13 58288637 58288848 -43584321 + L2 LINE L2 2331 2562 -752 22 0 0 0 chr13 58288867 58288889 -43584280 + AT_rich Low_complexity Low_complexity 1 22 0 511 119 0 0 chr13 58288889 58288956 -43584213 - FLAM_A SINE Alu -25 117 51 21 36 0 0 chr13 58289097 58289125 -43584044 + AT_rich Low_complexity Low_complexity 1 28 0 706 285 62 13 chr13 58289205 58289532 -43583637 + MLT1I LTR MaLR 34 403 -6 25 0 0 0 chr13 58291235 58291260 -43581909 + AT_rich Low_complexity Low_complexity 1 25 0 758 213 87 0 chr13 58291490 58291640 -43581529 + MER97c DNA MER1_type? 17 179 -911 2334 97 0 3 chr13 58292369 58292669 -43580500 + AluSq SINE Alu 1 299 -14 396 264 19 82 chr13 58292706 58292865 -43580304 + MIR SINE MIR 67 215 -47 2152 171 11 3 chr13 58293747 58294109 -43579060 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr13 58294322 58294345 -43578824 + AT_rich Low_complexity Low_complexity 1 23 0 2200 117 7 3 chr13 58294408 58294716 -43578453 - AluSx SINE Alu -3 309 1 1814 204 26 12 chr13 58294835 58295096 -43578073 + L1MA10 LINE L1 5906 6177 -157 1975 156 0 3 chr13 58295096 58295403 -43577766 + AluSx SINE Alu 1 306 -6 1814 204 26 12 chr13 58295403 58295563 -43577606 + L1MA10 LINE L1 6177 6333 -1 1179 273 75 18 chr13 58295658 58296208 -43576961 + HAL1 LINE L1 727 1307 -1200 9728 153 38 17 chr13 58296246 58298073 -43575096 + L1MA4 LINE L1 3484 5402 -898 2510 50 0 3 chr13 58298073 58298376 -43574793 - AluY SINE Alu -9 302 1 9728 153 38 17 chr13 58298376 58299289 -43573880 + L1MA4 LINE L1 5402 6294 -6 1663 226 120 53 chr13 58299305 58300080 -43573089 + HAL1 LINE L1 1350 2176 -331 1306 171 122 171 chr13 58301375 58301785 -43571384 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr13 58303839 58303861 -43569308 + AT_rich Low_complexity Low_complexity 1 22 0 2051 120 14 3 chr13 58304013 58304304 -43568865 - AluSx SINE Alu -18 294 1 504 232 99 0 chr13 58304547 58304689 -43568480 + L1ME3 LINE L1 5999 6154 -8 259 311 57 9 chr13 58306199 58306305 -43566864 - MIR SINE MIR -46 216 106 234 0 0 0 chr13 58307014 58307040 -43566129 + (CAA)n Simple_repeat Simple_repeat 2 27 0 398 321 86 23 chr13 58307122 58307343 -43565826 + MIR SINE MIR 25 259 -3 276 53 0 0 chr13 58307834 58307872 -43565297 + (TG)n Simple_repeat Simple_repeat 2 39 0 291 178 222 44 chr13 58308920 58309010 -43564159 + MIR3 SINE MIR 86 191 -17 521 289 20 7 chr13 58309227 58309379 -43563790 - MER5A DNA MER1_type 0 189 36 2364 92 0 0 chr13 58309414 58309709 -43563460 + AluSg SINE Alu 1 295 -15 211 278 97 0 chr13 58310066 58310138 -43563031 - MIR SINE MIR -65 197 119 441 224 92 69 chr13 58310149 58310323 -43562846 - MER5B DNA MER1_type 0 178 1 191 258 30 30 chr13 58310817 58310883 -43562286 + MIR SINE MIR 89 154 -108 27 62 0 0 chr13 58310988 58311036 -43562133 + AT_rich Low_complexity Low_complexity 1 48 0 33 56 0 0 chr13 58311055 58311109 -43562060 + AT_rich Low_complexity Low_complexity 1 54 0 196 324 72 18 chr13 58311297 58311408 -43561761 - L2 LINE L2 -428 2886 2770 1370 196 29 3 chr13 58311411 58311727 -43561442 + MER33 DNA MER1_type 1 324 0 281 223 96 43 chr13 58311830 58311924 -43561245 + MER58C DNA MER1_type 117 215 0 604 260 153 0 chr13 58311947 58312097 -43561072 + MER5A DNA MER1_type 16 188 -1 417 242 0 45 chr13 58312353 58312485 -43560684 + MER112 DNA MER1_type 1 126 -134 4069 112 5 43 chr13 58312686 58313353 -43559816 + L1PA15 LINE L1 5521 6161 -4 382 442 12 16 chr13 58313660 58313918 -43559251 + L1MEc LINE L1 211 467 -5929 203 340 62 0 chr13 58314421 58314518 -43558651 - L2 LINE L2 -33 3280 3178 844 179 6 0 chr13 58314695 58314851 -43558318 - L1MA10 LINE L1 -9 6325 6169 555 213 103 3 chr13 58314856 58315038 -43558131 - L1ME2 LINE L1 -142 6022 5818 2176 137 3 34 chr13 58315038 58315179 -43557990 + L1PA16 LINE L1 5795 5939 -227 2203 103 7 3 chr13 58315179 58315481 -43557688 + AluSq SINE Alu 1 303 -10 2176 137 3 34 chr13 58315481 58315718 -43557451 + L1PA16 LINE L1 5939 6161 -5 195 290 113 0 chr13 58317898 58317960 -43555209 + L2 LINE L2 3198 3266 -6 1727 186 0 0 chr13 58318390 58318675 -43554494 + AluJb SINE Alu 2 286 -26 214 95 48 0 chr13 58319004 58319046 -43554123 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 885 230 37 5 chr13 58319320 58319537 -43553632 + MER58A DNA MER1_type 1 224 0 686 189 0 68 chr13 58319560 58319750 -43553419 - MER20 DNA MER1_type -5 214 38 288 186 0 0 chr13 58320393 58320452 -43552717 + (TA)n Simple_repeat Simple_repeat 2 60 0 243 61 0 0 chr13 58321490 58321523 -43551646 + (A)n Simple_repeat Simple_repeat 1 33 0 242 173 0 19 chr13 58322061 58322113 -43551056 - MIR SINE MIR -114 148 98 1861 171 7 0 chr13 58322317 58322615 -43550554 - AluJb SINE Alu -12 300 1 21 0 0 0 chr13 58322896 58322917 -43550252 + AT_rich Low_complexity Low_complexity 1 21 0 3289 179 39 21 chr13 58322917 58323628 -43549541 - L1MB4 LINE L1 -6 6174 5451 22 35 0 0 chr13 58323658 58323687 -43549482 + AT_rich Low_complexity Low_complexity 1 29 0 1836 166 0 19 chr13 58323824 58324137 -43549032 - AluJb SINE Alu -5 307 1 1005 128 27 0 chr13 58324611 58324760 -43548409 + AluJo SINE Alu 1 153 -159 2001 159 9 15 chr13 58325073 58325412 -43547757 + MER1B DNA MER1_type 1 337 0 2375 85 3 0 chr13 58325626 58325921 -43547248 - AluSp SINE Alu -17 296 1 204 235 0 20 chr13 58326678 58326729 -43546440 + GA-rich Low_complexity Low_complexity 2 51 0 1122 305 115 28 chr13 58327125 58327829 -43545340 - L1MEc LINE L1 -2775 3440 2676 268 264 179 5 chr13 58327845 58328057 -43545112 - L1MEc LINE L1 -3644 2571 2323 2749 127 2 2 chr13 58328349 58328768 -43544401 - L1P3 LINE L1 -6032 429 11 407 265 60 94 chr13 58329254 58329552 -43543617 - L1MEc LINE L1 -4837 1559 1272 298 232 56 80 chr13 58329699 58329824 -43543345 - L2 LINE L2 -1 3312 3191 181 246 29 43 chr13 58329889 58329958 -43543211 - MIR SINE MIR -4 258 191 2182 226 123 6 chr13 58330332 58330996 -43542173 + L1ME1 LINE L1 70 811 -5585 * 4837 234 34 16 chr13 58330991 58332570 -43540599 + L1ME1 LINE L1 2887 4493 -1722 326 283 0 66 chr13 58332565 58332717 -43540452 + L1ME1 LINE L1 5958 6099 -136 * 2988 139 52 28 chr13 58332734 58333316 -43539853 - L1MA8 LINE L1 -5 6286 5691 537 253 7 7 chr13 58333318 58333472 -43539697 + L1MA10 LINE L1 6180 6333 -1 183 274 20 0 chr13 58333572 58333623 -43539546 + L2 LINE L2 3262 3313 0 231 363 0 0 chr13 58333837 58333917 -43539252 - MIR SINE MIR -109 153 74 241 261 0 15 chr13 58334047 58334112 -43539057 + MLT1J LTR MaLR 4 67 -444 923 228 7 7 chr13 58334221 58334465 -43538704 - MLT2B1 LTR ERVL -170 244 6 12660 161 19 14 chr13 58334470 58336718 -43536451 - ERVL-B1 LTR ERVL -7 5757 3498 3161 163 31 3 chr13 58336863 58337435 -43535734 - L1PA16 LINE L1 -5 6161 5574 735 226 54 29 chr13 58337980 58338219 -43534950 - L1ME2 LINE L1 -9 6155 5911 670 303 109 89 chr13 58338533 58339605 -43533564 - L2 LINE L2 -10 3262 2181 2277 110 0 10 chr13 58339740 58340050 -43533119 + AluSx SINE Alu 1 307 -5 296 353 65 16 chr13 58340749 58340933 -43532236 + L2 LINE L2 2186 2378 -936 426 298 18 0 chr13 58341016 58341130 -43532039 - L2 LINE L2 -4 3309 3194 347 314 53 62 chr13 58341139 58341461 -43531708 + L2 LINE L2 2434 2752 -562 795 223 121 35 chr13 58341675 58341931 -43531238 - MER93b LTR ERV1 -4 369 92 1177 134 37 23 chr13 58342203 58342420 -43530749 + L1PA16 LINE L1 5946 6165 -1 23 0 0 0 chr13 58342420 58342443 -43530726 + AT_rich Low_complexity Low_complexity 1 23 0 864 212 138 61 chr13 58342525 58342836 -43530333 - MER58B DNA MER1_type -3 338 4 234 312 121 19 chr13 58344398 58344555 -43528614 - L2 LINE L2 -4 3309 3137 824 172 0 22 chr13 58344628 58344762 -43528407 - FLAM_C SINE Alu -2 131 1 1310 272 67 23 chr13 58344901 58345335 -43527834 + L2 LINE L2 2067 2519 -795 1644 208 62 22 chr13 58345335 58345831 -43527338 + L1MD3 LINE L1 7468 7983 -12 1340 262 54 109 chr13 58345835 58346368 -43526801 + L2 LINE L2 2505 2979 -334 1797 162 44 7 chr13 58346368 58346664 -43526505 + AluJo SINE Alu 3 309 -3 1340 262 54 109 chr13 58346664 58346981 -43526188 + L2 LINE L2 2979 3312 -1 301 330 39 0 chr13 58347117 58347220 -43525949 - L2 LINE L2 -982 2332 2226 2305 92 3 0 chr13 58349143 58349436 -43523733 + AluSx SINE Alu 1 294 -18 204 245 0 0 chr13 58350346 58350399 -43522770 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 58350962 58350983 -43522186 + AT_rich Low_complexity Low_complexity 1 21 0 1333 146 30 0 chr13 58351964 58351991 -43521178 + AluJb SINE Alu 95 120 -192 216 0 0 0 chr13 58351991 58352015 -43521154 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1333 146 30 0 chr13 58352015 58352186 -43520983 + AluJb SINE Alu 120 299 -13 2175 101 0 30 chr13 58352955 58353251 -43519918 - AluSx SINE Alu -9 303 17 272 289 269 15 chr13 58353378 58353575 -43519594 + MIR SINE MIR 15 261 -1 335 260 130 26 chr13 58353797 58353951 -43519218 + L2 LINE L2 2873 3042 -230 397 250 32 16 chr13 58354920 58355044 -43518125 + MLT1J1 LTR MaLR 195 320 -126 353 216 127 52 chr13 58355149 58355283 -43517886 - L2 LINE L2 -11 3302 3159 783 138 75 11 chr13 58357192 58357366 -43515803 + L1MB7 LINE L1 5995 6179 -5 402 21 0 0 chr13 58357765 58357812 -43515357 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 194 0 39 0 chr13 58358117 58358143 -43515026 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1896 88 0 4 chr13 58358152 58358392 -43514777 - AluSc SINE Alu -48 261 23 1967 139 84 32 chr13 58358751 58359097 -43514072 - THE1B LTR MaLR 0 364 1 10754 93 55 6 chr13 58359097 58360603 -43512566 - THE1B-int LTR MaLR 0 1580 1 1796 157 32 39 chr13 58360603 58360946 -43512223 - THE1B LTR MaLR -17 411 1 409 282 39 34 chr13 58360991 58361197 -43511972 - L1ME3A LINE L1 -342 5828 5622 1764 175 7 3 chr13 58361217 58361503 -43511666 - AluJb SINE Alu -13 299 13 475 297 106 47 chr13 58361737 58362097 -43511072 - L2 LINE L2 -1 3312 2932 2089 138 0 10 chr13 58362185 58362497 -43510672 + AluSx SINE Alu 1 309 -3 246 338 49 0 chr13 58363336 58363460 -43509709 + MIR SINE MIR 10 143 -65 24 0 0 0 chr13 58365102 58365126 -43508043 + AT_rich Low_complexity Low_complexity 1 24 0 3123 101 171 7 chr13 58365447 58365984 -43507185 + MER51A LTR ERV1 10 634 0 251 321 114 0 chr13 58366464 58366604 -43506565 + MIR SINE MIR 1 156 -106 2208 119 0 0 chr13 58366907 58367201 -43505968 - AluSc SINE Alu -15 294 1 3413 103 24 0 chr13 58369320 58369826 -43503343 + L1PA15 LINE L1 5607 6124 -41 381 239 109 49 chr13 58370375 58370559 -43502610 - MLT1J1 LTR MaLR -7 439 245 867 128 8 8 chr13 58370573 58370706 -43502463 - FLAM_C SINE Alu 0 133 1 2337 88 0 0 chr13 58371816 58372112 -43501057 + AluY SINE Alu 1 296 -15 191 313 62 0 chr13 58372180 58372244 -43500925 - L2 LINE L2 -2 3311 3244 809 294 190 19 chr13 58372245 58372705 -43500464 - L2 LINE L2 0 3313 2777 607 321 81 9 chr13 58372708 58372929 -43500240 + MLT1H1 LTR MaLR 65 301 -254 1050 217 23 27 chr13 58373015 58373278 -43499891 + MSTD LTR MaLR 135 396 0 379 200 209 0 chr13 58373327 58373432 -43499737 + MLT1H1 LTR MaLR 421 547 -8 1201 264 221 10 chr13 58373440 58374042 -43499127 - L2 LINE L2 -967 2347 1619 402 314 61 45 chr13 58374037 58374358 -43498811 - L2 LINE L2 -126 3187 2853 * 2421 94 0 3 chr13 58374358 58374667 -43498502 + AluSc SINE Alu 1 308 -1 402 314 61 45 chr13 58374667 58374812 -43498357 - L2 LINE L2 -460 2853 2712 540 157 37 0 chr13 58375698 58375806 -43497363 - L1MA4 LINE L1 -11 6289 6178 21 0 0 0 chr13 58376462 58376483 -43496686 + AT_rich Low_complexity Low_complexity 1 21 0 360 334 109 71 chr13 58376900 58377211 -43495958 - L2 LINE L2 0 3272 2950 266 328 175 11 chr13 58377594 58377777 -43495392 - L2 LINE L2 -917 2397 2185 2453 77 3 0 chr13 58377839 58378137 -43495032 + AluSp SINE Alu 1 299 -14 26 0 0 0 chr13 58378283 58378309 -43494860 + AT_rich Low_complexity Low_complexity 1 26 0 276 100 0 0 chr13 58380889 58380929 -43492240 + (TG)n Simple_repeat Simple_repeat 2 41 0 186 43 0 0 chr13 58383009 58383032 -43490137 + (TTC)n Simple_repeat Simple_repeat 3 25 0 562 337 130 41 chr13 58383652 58384557 -43488612 + L2 LINE L2 2203 3180 -92 215 127 36 18 chr13 58384587 58384597 -43488572 + (TAAA)n Simple_repeat Simple_repeat 3 11 -47 2299 91 0 0 chr13 58384597 58384882 -43488287 + AluSc SINE Alu 1 285 -24 215 127 36 18 chr13 58384882 58384926 -43488243 + (TAAA)n Simple_repeat Simple_repeat 11 58 0 227 296 148 0 chr13 58385090 58385171 -43487998 - MIR3 SINE MIR -17 191 99 279 230 23 74 chr13 58385225 58385334 -43487835 - L1MC/D LINE L1 -801 5345 5232 429 20 0 0 chr13 58385334 58385384 -43487785 + (CA)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr13 58385383 58385421 -43487748 + (TA)n Simple_repeat Simple_repeat 2 39 0 * 279 230 23 74 chr13 58385384 58385423 -43487746 - L1MC/D LINE L1 -914 5232 5400 2088 110 3 7 chr13 58385423 58385705 -43487464 - AluSx SINE Alu -31 281 1 279 230 23 74 chr13 58385705 58385875 -43487294 - L1MC/D LINE L1 -745 5401 5224 * 391 320 44 32 chr13 58385870 58386193 -43486976 + L1ME3A LINE L1 5582 5912 -258 213 269 19 0 chr13 58386830 58386882 -43486287 - MIR3 SINE MIR -51 157 105 1746 188 14 0 chr13 58387585 58387873 -43485296 + AluJb SINE Alu 1 292 -20 402 309 7 44 chr13 58388264 58388333 -43484836 + L2 LINE L2 3134 3197 -75 1476 88 60 9 chr13 58388333 58388549 -43484620 + MER30 DNA MER1_type 4 230 0 402 309 7 44 chr13 58388549 58388615 -43484554 + L2 LINE L2 3197 3264 -8 1263 167 112 9 chr13 58389694 58390024 -43483145 - L1MC2 LINE L1 -1 6343 5980 306 296 116 25 chr13 58391103 58391302 -43481867 + HAL1 LINE L1 983 1199 -1308 186 43 0 0 chr13 58391446 58391469 -43481700 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2161 106 3 0 chr13 58391469 58391754 -43481415 - AluY SINE Alu -22 289 1 580 162 52 29 chr13 58391920 58392056 -43481113 - Charlie1 DNA MER1_type -1746 1015 877 1771 138 20 17 chr13 58393005 58393303 -43479866 - L1PB3 LINE L1 -7 6147 5849 287 331 32 40 chr13 58394519 58394643 -43478526 - MIR3 SINE MIR -5 203 81 235 197 91 30 chr13 58394694 58394760 -43478409 - MIR SINE MIR -107 101 32 263 390 0 0 chr13 58394878 58394978 -43478191 - MIR SINE MIR -58 150 51 812 153 0 36 chr13 58395448 58395585 -43477584 - FLAM_C SINE Alu -1 132 1 209 338 13 26 chr13 58397577 58397654 -43475515 - L2 LINE L2 -3 3310 3235 209 317 83 26 chr13 58397887 58398024 -43475145 - MIR3 SINE MIR -83 125 3 236 317 12 79 chr13 58398338 58398502 -43474667 + L2 LINE L2 3161 3313 0 649 310 65 3 chr13 58398788 58399027 -43474142 - MIR SINE MIR -10 252 2 205 228 25 63 chr13 58399213 58399292 -43473877 + MIR SINE MIR 100 175 -87 636 286 66 0 chr13 58399910 58400106 -43473063 + MIR SINE MIR 12 220 -42 2069 117 0 0 chr13 58400107 58400437 -43472732 + AluSx SINE Alu 1 330 0 394 314 30 54 chr13 58401166 58401500 -43471669 + L1ME LINE L1 51 376 -5694 2252 118 0 3 chr13 58401960 58402264 -43470905 + AluSx SINE Alu 1 303 -9 1153 303 66 34 chr13 58402291 58402885 -43470284 + L1ME LINE L1 467 1041 -5220 1802 175 3 3 chr13 58402885 58403182 -43469987 - AluJo SINE Alu -15 297 1 1153 303 66 34 chr13 58403182 58403574 -43469595 + L1ME LINE L1 1041 1699 -4562 287 203 81 27 chr13 58403614 58403688 -43469481 - MIR SINE MIR -13 249 172 442 281 80 44 chr13 58403745 58403994 -43469175 + MIR SINE MIR 5 262 0 195 69 0 0 chr13 58404366 58404395 -43468774 + (A)n Simple_repeat Simple_repeat 1 29 0 2708 82 30 0 chr13 58404886 58405250 -43467919 + THE1C LTR MaLR 1 375 0 1698 195 0 3 chr13 58407092 58407379 -43465790 + AluJo SINE Alu 1 286 -26 495 0 0 0 chr13 58407383 58407438 -43465731 + (TG)n Simple_repeat Simple_repeat 2 56 0 1602 156 111 15 chr13 58408254 58408587 -43464582 - MLT1A1 LTR MaLR 0 365 1 2533 10 0 17 chr13 58408778 58409092 -43464077 + AluYa5 SINE Alu 1 309 0 278 314 0 0 chr13 58409195 58409265 -43463904 - MIR SINE MIR -187 75 6 661 279 99 35 chr13 58410151 58410463 -43462706 + L3b LINE CR1 1137 1468 -115 22 0 0 0 chr13 58411533 58411555 -43461614 + AT_rich Low_complexity Low_complexity 1 22 0 1103 96 0 6 chr13 58411581 58411597 -43461572 - L1PB2 LINE L1 -198 5953 5938 615 227 5 38 chr13 58411597 58411782 -43461387 - L1MA4A LINE L1 -366 5937 5759 331 190 0 20 chr13 58411805 58411905 -43461264 + (TA)n Simple_repeat Simple_repeat 2 99 0 995 112 0 135 chr13 58411910 58412125 -43461044 - L1P5 LINE L1 -387 5764 5579 24 0 0 0 chr13 58412359 58412383 -43460786 + AT_rich Low_complexity Low_complexity 1 24 0 353 265 232 22 chr13 58413569 58413754 -43459415 + MIR SINE MIR 36 259 -3 2110 146 0 0 chr13 58414547 58414856 -43458313 - AluSx SINE Alu -3 309 1 511 303 119 0 chr13 58415338 58415523 -43457646 + MIR SINE MIR 28 234 -28 669 274 169 45 chr13 58415593 58416154 -43457015 + L1ME4a LINE L1 5327 5957 -164 1484 275 97 70 chr13 58416160 58416716 -43456453 + L2 LINE L2 2292 2886 -427 2139 124 7 0 chr13 58416716 58417023 -43456146 + AluSx SINE Alu 2 310 -2 1484 275 97 70 chr13 58417023 58417462 -43455707 + L2 LINE L2 2886 3312 -1 493 247 121 0 chr13 58418041 58418207 -43454962 - MIR SINE MIR -57 205 20 200 248 94 68 chr13 58418742 58418859 -43454310 - MIR SINE MIR -52 210 91 2172 113 7 19 chr13 58420285 58420594 -43452575 + AluSx SINE Alu 3 307 -5 252 170 0 0 chr13 58420727 58420780 -43452389 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 308 287 144 60 chr13 58421357 58421524 -43451645 - MIR SINE MIR -68 194 14 222 191 0 0 chr13 58422464 58422511 -43450658 + (TGG)n Simple_repeat Simple_repeat 1 47 0 2287 99 7 0 chr13 58422621 58422914 -43450255 - AluSp SINE Alu -18 295 1 23 33 0 0 chr13 58423081 58423111 -43450058 + AT_rich Low_complexity Low_complexity 1 30 0 2342 98 3 0 chr13 58423660 58423967 -43449202 - AluSx SINE Alu -4 308 1 479 273 67 46 chr13 58424190 58424418 -43448751 + MIR SINE MIR 1 229 -33 222 150 0 0 chr13 58425112 58425152 -43448017 + (GA)n Simple_repeat Simple_repeat 2 41 0 706 281 133 54 chr13 58426247 58426880 -43446289 - HAL1 LINE L1 -91 2416 1734 2751 137 9 2 chr13 58427312 58427758 -43445411 - L1PB4 LINE L1 -1 6155 5707 282 238 25 0 chr13 58428223 58428303 -43444866 + L1MA10 LINE L1 6246 6327 -7 795 164 15 22 chr13 58428470 58428604 -43444565 - FLAM_A SINE Alu 0 133 1 581 209 0 9 chr13 58429289 58429399 -43443770 - FLAM_C SINE Alu -30 113 5 832 298 18 0 chr13 58429528 58429756 -43443413 - MIR SINE MIR 0 262 31 2266 112 0 0 chr13 58429857 58430142 -43443027 - AluSc SINE Alu -24 285 1 1075 130 13 0 chr13 58430228 58430382 -43442787 + AluSg/x SINE Alu 137 292 -20 192 161 74 0 chr13 58430474 58430555 -43442614 + (TA)n Simple_repeat Simple_repeat 1 87 0 1387 218 102 21 chr13 58430620 58431051 -43442118 - MLT1D LTR MaLR -9 496 31 615 76 34 119 chr13 58431183 58431301 -43441868 - MSTA LTR MaLR 0 428 321 1642 180 61 15 chr13 58431301 58431629 -43441540 + MER61A LTR ERV1 1 343 0 1907 198 38 23 chr13 58431629 58432109 -43441060 + MER61A-int LTR ERV1 1 487 -4730 20582 103 31 14 chr13 58432115 58433701 -43439468 + MER61A-int LTR ERV1 1320 2877 -2340 2415 84 0 3 chr13 58433701 58434000 -43439169 + AluY SINE Alu 1 298 -13 20582 103 31 14 chr13 58434000 58434316 -43438853 + MER61A-int LTR ERV1 2877 3186 -2031 2036 105 54 0 chr13 58434316 58434592 -43438577 + AluSc SINE Alu 1 291 -18 20582 103 31 14 chr13 58434592 58434868 -43438301 + MER61A-int LTR ERV1 3186 3456 -1761 198 0 0 0 chr13 58434868 58434890 -43438279 + (TTG)n Simple_repeat Simple_repeat 2 23 0 20582 103 31 14 chr13 58434890 58436427 -43436742 + MER61A-int LTR ERV1 3456 5217 0 1747 153 54 24 chr13 58436427 58436760 -43436409 + MER61A LTR ERV1 1 343 0 1600 165 16 41 chr13 58436769 58437199 -43435970 - LTR12 LTR ERV1 -230 484 1 1390 138 101 11 chr13 58437206 58437482 -43435687 - MSTA LTR MaLR -127 301 1 753 198 0 0 chr13 58437613 58437739 -43435430 - FLAM_C SINE Alu -17 126 1 198 71 0 0 chr13 58437957 58437985 -43435184 + (CA)n Simple_repeat Simple_repeat 1 28 0 321 268 35 61 chr13 58439383 58439611 -43433558 + L1ME LINE L1 5547 5768 -353 617 242 11 2 chr13 58439717 58439999 -43433170 - LTR16B LTR ERVL -132 332 1 23 78 0 0 chr13 58440084 58440135 -43433034 + AT_rich Low_complexity Low_complexity 1 51 0 320 270 36 7 chr13 58440933 58441070 -43432099 - MER103 DNA DNA -7 159 19 197 300 75 12 chr13 58441177 58441257 -43431912 - MIR SINE MIR -87 121 37 2247 99 20 0 chr13 58442932 58443053 -43430116 + AluSx SINE Alu 3 120 -192 189 0 0 0 chr13 58443053 58443074 -43430095 + (CA)n Simple_repeat Simple_repeat 2 22 0 2247 99 20 0 chr13 58443074 58443245 -43429924 + AluSx SINE Alu 120 301 -11 24909 33 3 0 chr13 58444124 58448080 -43425089 - L1PA4 LINE L1 0 6155 2188 244 313 131 28 chr13 58448253 58448429 -43424740 + MIR SINE MIR 34 227 -35 535 84 0 0 chr13 58448457 58448528 -43424641 - AluSc SINE Alu -74 235 165 429 250 0 81 chr13 58448580 58448728 -43424441 - Charlie1 DNA MER1_type -2625 136 1 6238 66 11 2 chr13 58449021 58450037 -43423132 - L1PA8A LINE L1 -27 6104 5082 2276 98 0 16 chr13 58450044 58450360 -43422809 - AluY SINE Alu 0 311 1 29 0 0 0 chr13 58450368 58450397 -43422772 + AT_rich Low_complexity Low_complexity 1 29 0 5788 110 14 0 chr13 58451116 58451197 -43421972 + L1PA13 LINE L1 4918 4996 -1167 1829 166 7 7 chr13 58451197 58451492 -43421677 + AluJb SINE Alu 1 295 -17 5788 110 14 0 chr13 58451492 58451581 -43421588 + L1PA13 LINE L1 4996 5082 -1081 2658 86 14 0 chr13 58451581 58451931 -43421238 - THE1A LTR MaLR 0 355 1 5788 110 14 0 chr13 58451931 58453010 -43420159 + L1PA13 LINE L1 5082 6160 -3 244 286 62 9 chr13 58453459 58453571 -43419598 + MER103 DNA DNA 3 120 -46 29 0 0 0 chr13 58454106 58454135 -43419034 + AT_rich Low_complexity Low_complexity 1 29 0 2726 160 32 9 chr13 58454135 58454660 -43418509 - L1MA6 LINE L1 -1 6299 5763 1228 176 68 97 chr13 58454958 58455310 -43417859 + MER2 DNA MER2_type 3 344 0 2308 86 3 16 chr13 58455375 58455689 -43417480 - AluSp SINE Alu -3 310 1 229 275 128 20 chr13 58455705 58455956 -43417213 + L1MC5 LINE L1 7249 7526 -435 318 254 42 0 chr13 58457381 58457452 -43415717 - L2 LINE L2 -6 3307 3234 543 299 70 27 chr13 58458137 58458324 -43414845 + MER91A DNA MER1_type 1 195 -1 351 0 0 0 chr13 58458938 58458977 -43414192 + (CA)n Simple_repeat Simple_repeat 2 40 0 2003 123 13 29 chr13 58459161 58459471 -43413698 + AluSc SINE Alu 1 305 -4 21 57 0 0 chr13 58459695 58459730 -43413439 + AT_rich Low_complexity Low_complexity 1 35 0 5734 140 19 4 chr13 58460098 58461683 -43411486 + L1PB2 LINE L1 4540 6149 -2 2285 107 0 3 chr13 58461708 58462006 -43411163 - AluSg SINE Alu -1 309 13 1530 201 7 14 chr13 58462185 58462493 -43410676 + AluJo SINE Alu 1 306 0 2490 80 0 3 chr13 58463064 58463377 -43409792 - AluSq SINE Alu -1 312 1 355 253 0 0 chr13 58463397 58463484 -43409685 + MER63A DNA MER1_type 121 207 -3 24 0 0 0 chr13 58464141 58464165 -43409004 + AT_rich Low_complexity Low_complexity 1 24 0 529 223 49 27 chr13 58464457 58464641 -43408528 - MER53 DNA DNA -1 188 1 769 224 79 6 chr13 58464698 58464863 -43408306 - MER45A DNA AcHobo 0 178 2 2321 92 0 0 chr13 58465012 58465307 -43407862 - AluSc SINE Alu -14 295 1 257 349 160 0 chr13 58465318 58465424 -43407745 + L2 LINE L2 3150 3272 0 2216 116 0 0 chr13 58465669 58465962 -43407207 - AluSg SINE Alu -17 293 1 250 283 133 18 chr13 58467603 58467716 -43405453 + MIR SINE MIR 17 142 -66 1541 299 44 28 chr13 58467883 58468560 -43404609 - MER115 DNA AcHobo -3 4028 2 189 147 0 0 chr13 58468684 58468718 -43404451 + (TG)n Simple_repeat Simple_repeat 2 35 0 473 336 102 42 chr13 58468783 58469283 -43403886 + L2 LINE L2 2090 2619 -695 596 196 29 23 chr13 58469337 58469510 -43403659 + L1MC4a LINE L1 5796 5969 -1839 30 97 0 0 chr13 58469662 58469755 -43403414 + AT_rich Low_complexity Low_complexity 1 93 0 225 240 0 0 chr13 58470300 58470375 -43402794 + (TGAA)n Simple_repeat Simple_repeat 4 78 0 246 32 0 0 chr13 58471724 58471755 -43401414 + (CA)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr13 58474158 58474183 -43398986 + (TCC)n Simple_repeat Simple_repeat 3 27 0 208 325 65 41 chr13 58474631 58474754 -43398415 - MIR SINE MIR -135 127 2 2309 66 0 0 chr13 58474978 58475279 -43397890 + L1PA13 LINE L1 5863 6163 0 216 279 0 0 chr13 58475828 58475871 -43397298 - MER5A DNA MER1_type 0 189 147 708 283 12 0 chr13 58475871 58476037 -43397132 - MER5A DNA MER1_type -21 168 1 541 333 50 38 chr13 58476643 58477063 -43396106 + ERVL LTR ERVL 5007 5431 -333 495 293 77 62 chr13 58477191 58477223 -43395946 + L2 LINE L2 2971 3001 -312 2102 106 39 3 chr13 58477223 58477507 -43395662 - AluSq SINE Alu -19 294 1 495 293 77 62 chr13 58477507 58477812 -43395357 + L2 LINE L2 3001 3313 0 742 291 69 45 chr13 58478060 58478484 -43394685 - L2 LINE L2 -6 3307 2797 2284 178 29 7 chr13 58478484 58478901 -43394268 + MSTB LTR MaLR 1 426 0 742 291 69 45 chr13 58478901 58479013 -43394156 - L2 LINE L2 -516 2797 2689 438 207 34 95 chr13 58479022 58479201 -43393968 + HAL1 LINE L1 9 176 -2331 480 355 82 28 chr13 58479230 58479621 -43393548 + HAL1 LINE L1 276 687 -1820 478 257 112 15 chr13 58479712 58480051 -43393118 + HAL1 LINE L1 819 1190 -1317 803 274 66 13 chr13 58480095 58480474 -43392695 + HAL1 LINE L1 1249 1647 -860 384 279 0 14 chr13 58480652 58480792 -43392377 + HAL1 LINE L1 2227 2364 -143 561 308 181 14 chr13 58480935 58481283 -43391886 - L2 LINE L2 -624 2690 2285 1277 216 98 14 chr13 58481347 58481703 -43391466 + MLT1C LTR MaLR 82 467 0 571 341 106 36 chr13 58481742 58482270 -43390899 - L2 LINE L2 -1064 2250 1686 1193 155 68 9 chr13 58482285 58482597 -43390572 - LOR1a LTR ERV1 0 497 97 447 309 107 32 chr13 58482608 58482860 -43390309 - L2 LINE L2 -2680 634 364 287 188 24 35 chr13 58482938 58483023 -43390146 + MER69 DNA AcHobo 2443 2526 0 211 271 43 14 chr13 58483078 58483148 -43390021 - L2 LINE L2 -2973 341 270 435 199 51 32 chr13 58483414 58483570 -43389599 + L1M4 LINE L1 5121 5279 -867 183 384 176 0 chr13 58483735 58483894 -43389275 - MIR3 SINE MIR -9 199 13 300 208 109 40 chr13 58485038 58485139 -43388030 - L1ME4a LINE L1 -26 6095 5988 581 307 66 20 chr13 58485140 58485742 -43387427 - L1ME4a LINE L1 -183 5938 5309 200 182 0 0 chr13 58486616 58486649 -43386520 + GA-rich Low_complexity Low_complexity 4 36 0 2368 91 0 0 chr13 58486846 58487143 -43386026 + AluSx SINE Alu 1 297 -15 459 224 30 37 chr13 58487720 58487854 -43385315 + MER94 DNA DNA 1 133 -1 248 318 234 0 chr13 58488317 58488471 -43384698 - MIR SINE MIR -59 203 14 575 223 99 0 chr13 58489432 58489553 -43383616 - FLAM_A SINE Alu 0 133 1 21 71 0 0 chr13 58489598 58489640 -43383529 + AT_rich Low_complexity Low_complexity 1 42 0 187 276 61 51 chr13 58489920 58490018 -43383151 + L2 LINE L2 1798 1896 -1418 239 295 137 32 chr13 58490135 58490230 -43382939 - L2 LINE L2 -13 3300 3196 2303 101 13 0 chr13 58490728 58491036 -43382133 - AluSx SINE Alu 0 312 1 200 213 82 49 chr13 58491240 58491301 -43381868 + L2 LINE L2 3174 3236 -36 191 353 59 59 chr13 58491768 58491870 -43381299 + L2 LINE L2 3167 3268 -4 2800 9 0 16 chr13 58492042 58492358 -43380811 - AluYa5 SINE Alu 0 311 1 1628 159 108 15 chr13 58492549 58492883 -43380286 + MLT1A1 LTR MaLR 1 365 0 495 0 0 0 chr13 58493699 58493754 -43379415 + (CA)n Simple_repeat Simple_repeat 2 56 0 1698 195 0 3 chr13 58493758 58494045 -43379124 - AluJo SINE Alu -26 286 1 2708 82 30 0 chr13 58495887 58496251 -43376918 - THE1C LTR MaLR 0 375 1 195 69 0 0 chr13 58496742 58496771 -43376398 + (T)n Simple_repeat Simple_repeat 1 29 0 453 291 72 44 chr13 58497143 58497394 -43375775 - MIR SINE MIR 0 262 5 287 203 81 27 chr13 58497451 58497525 -43375644 + MIR SINE MIR 172 249 -13 1153 303 66 34 chr13 58497565 58497957 -43375212 - L1MCc LINE L1 -4562 1699 1321 1802 175 3 3 chr13 58497957 58498254 -43374915 + AluJo SINE Alu 1 297 -15 1153 303 66 34 chr13 58498254 58498848 -43374321 - L1MCc LINE L1 -4940 1321 467 2252 118 0 3 chr13 58498875 58499179 -43373990 - AluSx SINE Alu -9 303 1 394 314 30 54 chr13 58499639 58499973 -43373196 - L1MCc LINE L1 -5694 376 51 1271 131 0 0 chr13 58500702 58500925 -43372244 - AluSg/x SINE Alu 0 328 106 1895 160 0 0 chr13 58501060 58501384 -43371785 + AluJb SINE Alu 1 324 0 312 364 16 0 chr13 58502280 58502401 -43370768 - L2 LINE L2 0 3313 3191 1374 138 9 9 chr13 58503627 58503844 -43369325 - AluJb SINE Alu -6 306 90 2057 132 65 8 chr13 58503844 58504199 -43368970 + THE1C LTR MaLR 1 375 0 1996 66 4 0 chr13 58506574 58506831 -43366338 - L1PA8 LINE L1 -7 6165 5908 288 0 0 0 chr13 58506955 58506987 -43366182 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 3358 151 29 25 chr13 58508345 58509033 -43364136 + L1MC2 LINE L1 5537 6227 -117 2198 193 23 32 chr13 58509033 58509574 -43363595 - MER41B LTR ERV1 0 594 100 558 109 25 92 chr13 58509574 58509693 -43363476 + L1MC2 LINE L1 6226 6336 -8 318 327 198 0 chr13 58509832 58509994 -43363175 - MIR SINE MIR -32 230 37 4224 71 13 0 chr13 58510100 58510647 -43362522 - MER41A LTR ERV1 0 554 1 1612 194 0 37 chr13 58511509 58511831 -43361338 + AluJo SINE Alu 1 311 0 201 328 9 26 chr13 58511887 58512003 -43361166 + GA-rich Low_complexity Low_complexity 1 114 0 289 325 34 0 chr13 58512212 58512329 -43360840 + MIR3 SINE MIR 68 188 -20 * 352 265 81 29 chr13 58512282 58512418 -43360751 - MIR3 SINE MIR -25 183 41 2220 108 3 0 chr13 58513708 58514003 -43359166 - AluSq SINE Alu -15 298 3 901 144 0 0 chr13 58516544 58516683 -43356486 + FLAM_C SINE Alu 4 142 -1 325 296 20 21 chr13 58516870 58517000 -43356169 + MIR SINE MIR 13 145 -63 1283 241 66 16 chr13 58517012 58517451 -43355718 + L1ME1 LINE L1 5688 6148 -18 529 162 101 10 chr13 58517543 58517642 -43355527 + MER2 DNA MER2_type 1 108 -237 269 89 22 0 chr13 58517682 58517727 -43355442 + (TA)n Simple_repeat Simple_repeat 1 46 0 433 186 0 0 chr13 58517727 58517813 -43355356 + MER2 DNA MER2_type 88 173 -172 3354 158 19 6 chr13 58517906 58518537 -43354632 + L1MA5 LINE L1 5628 6266 -34 599 288 25 6 chr13 58518977 58519140 -43354029 - MER5B DNA MER1_type -12 166 1 183 257 0 0 chr13 58519690 58519725 -43353444 - MIR SINE MIR -144 64 30 2358 92 0 0 chr13 58519890 58520193 -43352976 - AluSc SINE Alu -6 303 1 2094 123 77 6 chr13 58520574 58520924 -43352245 + THE1C LTR MaLR 1 375 0 205 160 240 0 chr13 58521193 58521243 -43351926 - L2 LINE L2 0 3313 3252 186 43 0 0 chr13 58521860 58521883 -43351286 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2238 98 7 3 chr13 58521885 58522182 -43350987 - AluSg SINE Alu -12 298 1 1458 123 5 5 chr13 58522186 58522405 -43350764 - AluSg/x SINE Alu 0 312 94 587 327 142 10 chr13 58523578 58523994 -43349175 - L2 LINE L2 -812 2502 2032 255 303 30 10 chr13 58523993 58524092 -43349077 + L2 LINE L2 2932 3032 -240 * 181 313 150 0 chr13 58524265 58524345 -43348824 + L2 LINE L2 3165 3256 -16 23 33 0 0 chr13 58525836 58525866 -43347303 + AT_rich Low_complexity Low_complexity 1 30 0 3779 74 17 8 chr13 58525911 58526437 -43346732 - L1PA10 LINE L1 -1 6167 5637 373 222 56 37 chr13 58526437 58526545 -43346624 + Charlie2 DNA MER1_type 2161 2270 -592 693 333 58 44 chr13 58526945 58527375 -43345794 + L2 LINE L2 2837 3272 0 200 211 0 0 chr13 58527703 58527741 -43345428 - L2 LINE L2 -1 3312 3275 960 198 6 6 chr13 58529301 58529478 -43343691 + MER45A DNA AcHobo 2 178 0 226 193 35 18 chr13 58529478 58529535 -43343634 + L1MC/D LINE L1 5854 5911 -1897 419 225 108 22 chr13 58529622 58529654 -43343515 + MIR SINE MIR 2 30 -232 1591 165 77 4 chr13 58529654 58529927 -43343242 + AluJo SINE Alu 1 293 -19 419 225 108 22 chr13 58529927 58530091 -43343078 + MIR SINE MIR 30 180 -82 634 193 183 7 chr13 58530252 58530526 -43342643 - MER69 DNA AcHobo -30 2496 2175 2060 147 7 3 chr13 58530527 58530834 -43342335 + AluSx SINE Alu 1 308 -4 315 258 158 0 chr13 58530893 58531029 -43342140 - L1MB7 LINE L1 -6 6160 6011 2307 219 37 86 chr13 58531037 58531978 -43341191 - L1M4 LINE L1 -1712 4434 3540 924 236 23 5 chr13 58532724 58532944 -43340225 - MER58A DNA MER1_type 0 224 1 2032 150 0 71 chr13 58532978 58533214 -43339955 - MLT1A1 LTR MaLR 0 365 167 2172 116 14 0 chr13 58533214 58533507 -43339662 - AluSg SINE Alu -13 297 1 2032 150 0 71 chr13 58533507 58533663 -43339506 - MLT1A1 LTR MaLR -198 167 1 1646 187 43 7 chr13 58534644 58534944 -43338225 - AluJo SINE Alu -1 311 1 794 240 51 0 chr13 58535294 58535469 -43337700 + MER5A DNA MER1_type 6 189 0 196 298 69 46 chr13 58535541 58535672 -43337497 + L2 LINE L2 2127 2260 -1054 1560 197 29 18 chr13 58535816 58536197 -43336972 - MER96B DNA MER1_type? -7 410 26 25 31 0 0 chr13 58538477 58538509 -43334660 + AT_rich Low_complexity Low_complexity 1 32 0 258 267 67 50 chr13 58541189 58541309 -43331860 - L2 LINE L2 -10 3262 3141 2237 104 0 29 chr13 58541490 58541806 -43331363 - AluSg SINE Alu -3 307 1 276 256 51 0 chr13 58542449 58542527 -43330642 - MIR3 SINE MIR -2 206 125 260 207 50 99 chr13 58545443 58545564 -43327605 - MIR SINE MIR -50 212 98 2346 184 23 19 chr13 58545635 58545820 -43327349 + L1MC4a LINE L1 7285 7468 -340 2292 133 67 13 chr13 58545820 58546196 -43326973 - MSTD LTR MaLR 0 396 1 2346 184 23 19 chr13 58546196 58546531 -43326638 + L1MC4a LINE L1 7468 7807 -1 21 0 0 0 chr13 58546532 58546553 -43326616 + AT_rich Low_complexity Low_complexity 1 21 0 327 271 68 17 chr13 58546802 58546920 -43326249 + MIR SINE MIR 107 230 -32 393 39 0 0 chr13 58549239 58549290 -43323879 + (TC)n Simple_repeat Simple_repeat 1 51 0 483 117 0 0 chr13 58549290 58549384 -43323785 + (TCCA)n Simple_repeat Simple_repeat 3 96 0 1711 149 0 48 chr13 58549575 58549890 -43323279 + AluJo SINE Alu 12 311 -1 811 350 170 14 chr13 58549949 58550668 -43322501 + L2 LINE L2 1928 2758 -556 437 312 43 0 chr13 58551315 58551456 -43321713 + MIR3 SINE MIR 41 187 -21 315 157 0 0 chr13 58552243 58552294 -43320875 - L1MC4 LINE L1 -1339 6703 6653 320 263 150 20 chr13 58552423 58552876 -43320293 + L1 LINE L1 2950 3461 -2685 306 292 78 66 chr13 58552906 58553163 -43320006 + L1 LINE L1 3515 3774 -2372 384 235 53 58 chr13 58553174 58553417 -43319752 + L1 LINE L1 3856 4097 -2049 514 326 115 10 chr13 58553429 58553821 -43319348 + L1 LINE L1 4122 4554 -1592 30 0 0 0 chr13 58553919 58553949 -43319220 + AT_rich Low_complexity Low_complexity 1 30 0 224 296 7 53 chr13 58554739 58554891 -43318278 + CT-rich Low_complexity Low_complexity 3 147 0 258 325 0 13 chr13 58555505 58555582 -43317587 + L2 LINE L2 3193 3268 -4 535 229 110 66 chr13 58556704 58556931 -43316238 + MIR SINE MIR 20 256 -6 252 273 0 52 chr13 58556975 58557052 -43316117 - L2 LINE L2 0 3313 3241 2127 179 46 36 chr13 58557798 58558294 -43314875 + MLT1D LTR MaLR 1 501 -4 246 333 40 0 chr13 58558671 58558746 -43314423 + L2 LINE L2 3143 3220 -52 261 0 0 0 chr13 58559257 58559286 -43313883 + (T)n Simple_repeat Simple_repeat 1 29 0 407 210 10 0 chr13 58560015 58560115 -43313054 + L1MB2 LINE L1 5948 6048 -123 2464 103 22 66 chr13 58560135 58560589 -43312580 - Tigger2 DNA MER2_type -1 2717 2284 2272 111 0 7 chr13 58560591 58560897 -43312272 - AluY SINE Alu -7 304 1 432 162 0 0 chr13 58560911 58560979 -43312190 - Tigger2 DNA MER2_type -2649 69 2 509 81 93 12 chr13 58560986 58561072 -43312097 + L1MB2 LINE L1 6072 6164 -7 243 304 54 0 chr13 58561404 58561516 -43311653 - MIR SINE MIR -12 250 133 509 248 30 17 chr13 58561620 58561799 -43311370 - MIR SINE MIR -26 182 3 185 395 33 58 chr13 58561912 58562063 -43311106 - L2 LINE L2 -337 2977 2824 2293 91 0 3 chr13 58562063 58562360 -43310809 + AluSc SINE Alu 1 296 -13 185 395 33 58 chr13 58562360 58562537 -43310632 - L2 LINE L2 -490 2824 2657 24 0 0 0 chr13 58562728 58562752 -43310417 + AT_rich Low_complexity Low_complexity 1 24 0 2267 80 10 0 chr13 58563168 58563457 -43309712 - AluSx SINE Alu -20 292 1 424 243 14 7 chr13 58564000 58564140 -43309029 - MER103 DNA DNA 0 166 26 730 290 89 0 chr13 58564294 58564518 -43308651 + MIR SINE MIR 19 262 0 265 344 42 0 chr13 58564734 58564830 -43308339 + L2 LINE L2 2659 2758 -556 183 364 0 20 chr13 58564979 58565078 -43308091 + L2 LINE L2 2945 3041 -231 248 312 56 32 chr13 58565198 58565323 -43307846 + L2 LINE L2 3182 3309 -4 2713 99 30 95 chr13 58565565 58566343 -43306826 + SVA Other Other 393 868 -554 43 161 0 0 chr13 58566378 58566471 -43306698 + AT_rich Low_complexity Low_complexity 1 93 0 203 98 73 0 chr13 58566681 58566722 -43306447 + G-rich Low_complexity Low_complexity 2 45 0 6204 87 12 52 chr13 58566829 58568012 -43305157 + SVA Other Other 433 1386 0 192 288 164 48 chr13 58568893 58569039 -43304130 - MIR SINE MIR -34 228 66 362 288 63 0 chr13 58569813 58569924 -43303245 + L2 LINE L2 3184 3301 -12 591 294 115 15 chr13 58570425 58570694 -43302475 + MLT1J1 LTR MaLR 20 315 -131 226 257 28 73 chr13 58570745 58570854 -43302315 + MLT1F LTR MaLR 59 162 -433 377 306 140 21 chr13 58570944 58571179 -43301990 + MLT1F LTR MaLR 280 542 0 425 73 176 0 chr13 58572253 58572321 -43300848 + MADE1 DNA Mariner 1 80 0 315 0 0 0 chr13 58572587 58572622 -43300547 + (CA)n Simple_repeat Simple_repeat 2 36 0 2237 108 0 0 chr13 58573432 58573727 -43299442 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr13 58575670 58575692 -43297477 + AT_rich Low_complexity Low_complexity 1 22 0 507 340 207 17 chr13 58575747 58576120 -43297049 - L2 LINE L2 -86 3227 2786 1992 248 80 13 chr13 58576123 58576676 -43296493 - MLT1G1 LTR MaLR -5 590 1 1325 237 46 0 chr13 58576676 58577001 -43296168 - L2 LINE L2 -521 2793 2454 374 238 110 61 chr13 58577977 58578141 -43295028 + L1MDb LINE L1 1124 1295 -5114 258 32 0 0 chr13 58578149 58578180 -43294989 + (GA)n Simple_repeat Simple_repeat 2 32 0 427 249 49 81 chr13 58578259 58578457 -43294712 + L1MDb LINE L1 1463 1643 -4944 2263 103 0 10 chr13 58578457 58578757 -43294412 + AluSx SINE Alu 1 297 -15 427 249 49 81 chr13 58578757 58578968 -43294201 + L1MDb LINE L1 1643 1859 -4728 239 292 80 7 chr13 58579756 58579893 -43293276 - L1ME LINE L1 -340 5781 5635 4603 149 7 2 chr13 58579951 58580772 -43292397 + L1PB4 LINE L1 5329 6153 -3 410 348 75 21 chr13 58580808 58580995 -43292174 - L1ME LINE L1 -555 5566 5370 2370 73 3 3 chr13 58581096 58581399 -43291770 + AluY SINE Alu 2 304 -7 297 312 90 29 chr13 58581424 58581902 -43291267 - L1ME LINE L1 -1836 4310 3804 532 299 143 23 chr13 58582236 58582664 -43290505 - L1ME LINE L1 -2701 3445 2967 335 274 300 11 chr13 58583249 58583439 -43289730 - MIR SINE MIR 0 262 18 2162 106 9 44 chr13 58583442 58583763 -43289406 - AluSx SINE Alu -2 310 1 236 136 0 0 chr13 58584504 58584548 -43288621 - L1M1 LINE L1 -502 5800 5757 900 115 209 0 chr13 58584549 58584731 -43288438 + L1MA2 LINE L1 6005 6224 -80 1477 97 22 9 chr13 58584731 58584959 -43288210 + L1MA2 LINE L1 6069 6299 -5 2435 82 0 13 chr13 58585712 58586027 -43287142 - AluY SINE Alu 0 311 1 187 376 77 47 chr13 58586365 58586535 -43286634 + L2 LINE L2 3092 3266 -6 424 300 157 31 chr13 58586624 58586847 -43286322 - MIR SINE MIR -10 252 2 1782 167 0 26 chr13 58586894 58587206 -43285963 + AluJb SINE Alu 1 304 -8 23 54 0 0 chr13 58587674 58587711 -43285458 + AT_rich Low_complexity Low_complexity 1 37 0 694 212 0 0 chr13 58587715 58587847 -43285322 + FLAM_C SINE Alu 1 132 -11 223 273 121 76 chr13 58587969 58588101 -43285068 - MIR SINE MIR -57 205 68 181 392 39 39 chr13 58588546 58588676 -43284493 + L3 LINE CR1 133 262 -1315 2086 181 24 3 chr13 58588755 58589137 -43284032 - MLT1B LTR MaLR 0 390 1 283 247 0 74 chr13 58589796 58589877 -43283292 + MER7C DNA MER2_type 1 75 -527 2771 162 38 0 chr13 58589977 58590477 -43282692 + MER7C DNA MER2_type 84 602 0 461 375 134 28 chr13 58590521 58591590 -43281579 + L2 LINE L2 1794 2975 -339 2008 98 0 4 chr13 58591902 58592166 -43281003 - AluSp SINE Alu -15 298 36 1812 156 0 0 chr13 58592176 58592451 -43280718 - AluSx SINE Alu -10 302 28 603 245 122 0 chr13 58593156 58593344 -43279825 + MER58C DNA MER1_type 5 215 0 363 340 16 17 chr13 58593546 58593750 -43279419 + MIR SINE MIR 17 220 -42 406 266 16 23 chr13 58594284 58594412 -43278757 + MLT1J1 LTR MaLR 36 162 -284 1476 199 17 0 chr13 58594494 58594796 -43278373 + L1P LINE L1 4766 5072 -1074 26 50 0 0 chr13 58594920 58594960 -43278209 + AT_rich Low_complexity Low_complexity 1 40 0 1281 186 82 37 chr13 58595025 58595353 -43277816 + MER2 DNA MER2_type 3 345 0 647 208 49 33 chr13 58595353 58595511 -43277658 + MLT1C LTR MaLR 74 234 -233 638 280 19 14 chr13 58595709 58595920 -43277249 + MLT1C LTR MaLR 253 464 -3 1329 208 63 23 chr13 58596038 58596389 -43276780 - MLT1A1 LTR MaLR 0 365 1 352 258 48 91 chr13 58597015 58597201 -43275968 - MER5A DNA MER1_type -5 184 7 328 232 10 30 chr13 58597266 58597365 -43275804 - MER5A DNA MER1_type -80 109 13 * 479 270 15 7 chr13 58597364 58597501 -43275668 + MER5B DNA MER1_type 33 170 -8 2093 119 3 3 chr13 58598820 58599114 -43274055 - AluSx SINE Alu -14 298 5 643 208 27 0 chr13 58599754 58599903 -43273266 - MER103 DNA DNA -4 162 10 252 324 28 76 chr13 58600099 58600244 -43272925 - MIR3 SINE MIR -46 162 25 189 0 0 0 chr13 58600899 58600920 -43272249 + (A)n Simple_repeat Simple_repeat 1 21 0 2031 132 0 10 chr13 58601415 58601711 -43271458 - AluSx SINE Alu 0 312 20 306 291 25 0 chr13 58601717 58601796 -43271373 - L2 LINE L2 -5 3267 3187 707 281 94 13 chr13 58602023 58602258 -43270911 - MIR SINE MIR -3 259 6 320 206 0 0 chr13 58604000 58604068 -43269101 + L1ME2 LINE L1 6087 6154 -10 23 0 0 0 chr13 58604139 58604162 -43269007 + AT_rich Low_complexity Low_complexity 1 23 0 1887 231 53 47 chr13 58604259 58604456 -43268713 - L1MD2 LINE L1 -345 6014 5820 3027 95 7 20 chr13 58604456 58604900 -43268269 - L1PA13 LINE L1 -19 6144 5707 1887 231 53 47 chr13 58604900 58605322 -43267847 - L1MD2 LINE L1 -539 5820 5391 1285 249 62 10 chr13 58605326 58605712 -43267457 - LTR40b LTR ERVL -4 458 53 2399 69 10 3 chr13 58605743 58606049 -43267120 - AluY SINE Alu -3 308 1 55 24 0 24 chr13 58606316 58606358 -43266811 + AT_rich Low_complexity Low_complexity 1 42 -40 1993 153 6 6 chr13 58606358 58606671 -43266498 - AluSq SINE Alu 0 313 1 55 24 0 24 chr13 58606671 58606712 -43266457 + AT_rich Low_complexity Low_complexity 42 82 0 244 331 75 30 chr13 58607219 58607352 -43265817 - MIR SINE MIR -76 186 48 2163 128 0 3 chr13 58607378 58607691 -43265478 - AluSx SINE Alu 0 312 1 418 350 103 9 chr13 58608242 58608465 -43264704 - MIR SINE MIR -18 244 1 676 313 44 0 chr13 58609599 58609826 -43263343 - MIR SINE MIR 0 262 26 2293 103 7 0 chr13 58611569 58611871 -43261298 - AluSp SINE Alu -9 304 1 23 78 0 0 chr13 58612200 58612251 -43260918 + AT_rich Low_complexity Low_complexity 1 51 0 456 263 19 39 chr13 58612721 58612877 -43260292 - MIR SINE MIR -2 260 108 1779 167 35 67 chr13 58613593 58613994 -43259175 - MLT1B LTR MaLR -2 388 1 423 334 51 23 chr13 58614596 58615030 -43258139 - L1ME LINE L1 -468 5702 5257 225 0 0 0 chr13 58617877 58617902 -43255267 + (T)n Simple_repeat Simple_repeat 1 25 0 2415 51 3 35 chr13 58618445 58618756 -43254413 + AluY SINE Alu 2 302 -9 343 284 47 39 chr13 58619302 58619429 -43253740 - L2 LINE L2 -2 3311 3184 2667 128 10 58 chr13 58619756 58619977 -43253192 - MER1A DNA MER1_type -2173 529 299 16512 41 4 0 chr13 58619977 58622631 -43250538 - L1PA5 LINE L1 -5 6149 3487 2667 128 10 58 chr13 58622631 58622866 -43250303 - MER1A DNA MER1_type -2403 299 60 1683 136 6 96 chr13 58622866 58623190 -43249979 - AluJb SINE Alu -17 295 1 2667 128 10 58 chr13 58623190 58623247 -43249922 - MER1A DNA MER1_type -2642 60 2 1851 255 105 37 chr13 58623247 58623816 -43249353 + MLT1E2 LTR MaLR 19 626 0 206 343 168 8 chr13 58623829 58624097 -43249072 + L2 LINE L2 2447 2757 -557 568 357 80 13 chr13 58624235 58624546 -43248623 + MER115 DNA AcHobo 1 332 -361 1183 250 11 21 chr13 58624574 58624605 -43248564 + MER115 DNA AcHobo 409 439 -254 1435 199 107 24 chr13 58624605 58624942 -43248227 - MLT1A1 LTR MaLR 0 365 1 1183 250 11 21 chr13 58624942 58625190 -43247979 + MER115 DNA AcHobo 439 685 -8 375 286 23 29 chr13 58625192 58625363 -43247806 + L2 LINE L2 2895 3064 -208 696 241 41 15 chr13 58625652 58625847 -43247322 - MIR SINE MIR 0 262 63 21 0 0 0 chr13 58625920 58625941 -43247228 + AT_rich Low_complexity Low_complexity 1 21 0 4236 152 11 37 chr13 58627466 58628196 -43244973 + MER50 LTR ERV1 1 711 -23 225 284 45 0 chr13 58628197 58628264 -43244905 + MIR3 SINE MIR 89 158 -50 198 0 0 0 chr13 58628276 58628298 -43244871 + (T)n Simple_repeat Simple_repeat 1 22 0 186 362 0 0 chr13 58629225 58629283 -43243886 + L3 LINE CR1 1519 1576 -1 * 289 222 67 33 chr13 58629266 58629356 -43243813 + MIR SINE MIR 97 189 -73 593 273 13 13 chr13 58629391 58629541 -43243628 + L2 LINE L2 3117 3266 -6 634 237 21 52 chr13 58629696 58629764 -43243405 + MER5A DNA MER1_type 2 71 -118 1856 173 0 7 chr13 58629764 58630070 -43243099 + AluJb SINE Alu 1 304 -8 634 237 21 52 chr13 58630070 58630195 -43242974 + MER5A DNA MER1_type 71 189 0 223 318 207 14 chr13 58630311 58630528 -43242641 - MIR SINE MIR 0 262 4 466 332 52 0 chr13 58631436 58631629 -43241540 - MIR SINE MIR -6 256 54 2129 118 33 13 chr13 58631991 58632297 -43240872 + AluSx SINE Alu 1 312 0 424 121 91 0 chr13 58632337 58632403 -43240766 + MSTB1 LTR MaLR 1 72 -360 43481 33 22 3 chr13 58632403 58638427 -43234742 + L1PA2 LINE L1 13 6155 0 2318 144 42 13 chr13 58638431 58638812 -43234357 + MSTB1 LTR MaLR 41 432 0 1963 148 7 0 chr13 58639283 58639588 -43233581 + L1MB7 LINE L1 5862 6168 -16 22 0 0 0 chr13 58639593 58639615 -43233554 + AT_rich Low_complexity Low_complexity 1 22 0 2173 135 0 0 chr13 58639627 58639923 -43233246 + AluSx SINE Alu 4 299 -13 2057 120 0 7 chr13 58641038 58641321 -43231848 - AluSx SINE Alu -31 281 1 359 286 46 66 chr13 58641321 58641562 -43231607 + L2 LINE L2 1987 2222 -1092 * 500 241 67 133 chr13 58641544 58641667 -43231502 + L2 LINE L2 3019 3149 -164 3475 113 30 0 chr13 58641667 58642171 -43230998 - L1MA2 LINE L1 -1 6303 5785 500 241 67 133 chr13 58642171 58642247 -43230922 + L2 LINE L2 3149 3228 -85 315 0 0 0 chr13 58642247 58642282 -43230887 + (TG)n Simple_repeat Simple_repeat 2 36 0 500 241 67 133 chr13 58642282 58642397 -43230772 + L2 LINE L2 3228 3313 0 1459 166 28 35 chr13 58642922 58643205 -43229964 + AluJo SINE Alu 21 301 -11 2960 130 17 5 chr13 58643296 58643718 -43229451 - MSTA LTR MaLR -1 427 1 208 346 177 0 chr13 58643816 58643946 -43229223 - L2 LINE L2 -4 3268 3116 204 40 0 0 chr13 58643958 58643983 -43229186 + (TA)n Simple_repeat Simple_repeat 1 25 0 483 18 0 0 chr13 58643984 58644040 -43229129 + (TG)n Simple_repeat Simple_repeat 1 56 0 1616 163 82 0 chr13 58645155 58645425 -43227744 + AluJo SINE Alu 17 308 -4 201 318 23 0 chr13 58645708 58645796 -43227373 + L2 LINE L2 2231 2320 -994 288 0 0 0 chr13 58646161 58646193 -43226976 + (A)n Simple_repeat Simple_repeat 1 32 0 213 328 15 0 chr13 58646609 58646676 -43226493 + L2 LINE L2 3232 3299 -14 2101 109 20 0 chr13 58647292 58647594 -43225575 + AluSp SINE Alu 1 308 -5 330 317 116 31 chr13 58647687 58647911 -43225258 - MIR SINE MIR 0 262 20 253 202 11 34 chr13 58648025 58648114 -43225055 + (CTATA)n Simple_repeat Simple_repeat 4 90 0 593 304 0 0 chr13 58648352 58648510 -43224659 + MIR SINE MIR 18 175 -87 2395 179 49 5 chr13 58648723 58649131 -43224038 - MSTB LTR MaLR 0 426 1 234 0 0 0 chr13 58649742 58649768 -43223401 + (A)n Simple_repeat Simple_repeat 1 26 0 667 248 149 46 chr13 58649768 58650224 -43222945 + MLT1H LTR MaLR 18 520 -29 671 184 105 22 chr13 58650500 58650728 -43222441 - MLT1A2 LTR MaLR 0 374 38 1678 171 4 4 chr13 58650728 58651003 -43222166 - AluJb SINE Alu -37 275 1 671 184 105 22 chr13 58651003 58651045 -43222124 - MLT1A2 LTR MaLR -336 38 1 356 257 160 51 chr13 58651051 58651226 -43221943 - MIR SINE MIR -49 213 20 359 247 49 0 chr13 58651842 58651923 -43221246 + L2 LINE L2 3224 3308 -5 200 256 0 0 chr13 58652150 58652189 -43220980 + polypurine Low_complexity Low_complexity 4 42 0 2255 81 16 3 chr13 58654689 58654996 -43218173 - AluSx SINE Alu -1 311 1 1967 207 151 10 chr13 58655718 58656261 -43216908 - MLT1E1 LTR MaLR -2 652 1 293 309 181 0 chr13 58658131 58658225 -43214944 + MER5B DNA MER1_type 66 176 -2 507 274 61 28 chr13 58658227 58658682 -43214487 - L1ME LINE L1 -508 5656 5185 401 275 101 59 chr13 58658734 58659308 -43213861 - L1ME LINE L1 -1443 4703 4106 1672 213 92 7 chr13 58659313 58659717 -43213452 + LTR16A LTR ERVL 1 438 -12 208 283 0 19 chr13 58659826 58659879 -43213290 + L2 LINE L2 3194 3245 -68 959 232 30 0 chr13 58660367 58660565 -43212604 + MER63A DNA MER1_type 7 210 0 23 54 0 0 chr13 58660598 58660635 -43212534 + AT_rich Low_complexity Low_complexity 1 37 0 429 316 179 46 chr13 58660862 58661596 -43211573 + L2 LINE L2 1990 2820 -494 261 239 162 26 chr13 58661633 58661750 -43211419 + MLT1L LTR MaLR 86 218 -397 583 232 181 0 chr13 58662094 58662249 -43210920 + MER5A DNA MER1_type 6 188 -1 892 183 33 7 chr13 58662258 58662411 -43210758 + MER5A DNA MER1_type 5 161 -28 626 257 27 14 chr13 58662504 58662652 -43210517 - MER5B DNA MER1_type -3 175 26 263 304 11 33 chr13 58663000 58663092 -43210077 + L2 LINE L2 3224 3313 0 604 214 15 46 chr13 58663169 58663300 -43209869 + FLAM_A SINE Alu 1 127 -6 467 321 89 13 chr13 58663520 58663744 -43209425 + MIR SINE MIR 5 245 -17 1496 153 50 0 chr13 58664660 58664921 -43208248 - L1 LINE L1 -1453 4693 4420 346 325 0 16 chr13 58665109 58665235 -43207934 - MIR SINE MIR -92 170 47 2205 113 3 7 chr13 58665326 58665636 -43207533 - AluSp SINE Alu -4 309 1 437 292 65 22 chr13 58665721 58665906 -43207263 + MIR SINE MIR 70 262 0 25 31 0 0 chr13 58669753 58669785 -43203384 + AT_rich Low_complexity Low_complexity 1 32 0 1778 180 0 14 chr13 58669943 58670238 -43202931 - AluJo SINE Alu -21 291 1 332 340 151 70 chr13 58670336 58670721 -43202448 - L2 LINE L2 0 3272 2857 476 281 0 0 chr13 58670852 58670980 -43202189 - MER20 DNA MER1_type -3 216 89 22 0 0 0 chr13 58671492 58671514 -43201655 + AT_rich Low_complexity Low_complexity 1 22 0 463 183 157 9 chr13 58671578 58671693 -43201476 - FLAM_C SINE Alu -1 132 1 1839 183 10 0 chr13 58671693 58671994 -43201175 - AluJo SINE Alu -8 304 1 630 268 33 24 chr13 58672138 58672351 -43200818 + L1MC4 LINE L1 7369 7583 -459 258 209 143 38 chr13 58673039 58673144 -43200025 + MLT1K LTR MaLR 455 570 -18 1924 172 42 42 chr13 58673361 58673769 -43199400 - MLT2D LTR ERVL -2 412 5 242 278 0 0 chr13 58673954 58674008 -43199161 + (CATTC)n Simple_repeat Simple_repeat 3 56 0 242 247 24 12 chr13 58674008 58674093 -43199076 + MER112 DNA MER1_type 163 248 -12 227 266 133 3 chr13 58676945 58677116 -43196053 + MIR SINE MIR 12 256 -6 23 33 0 0 chr13 58677488 58677518 -43195651 + AT_rich Low_complexity Low_complexity 1 30 0 284 333 141 30 chr13 58680458 58680692 -43192477 + MIR SINE MIR 2 261 -1 265 250 87 22 chr13 58688290 58688382 -43184787 - MIR SINE MIR -79 183 86 297 51 0 0 chr13 58688699 58688738 -43184431 + (CA)n Simple_repeat Simple_repeat 2 40 0 1649 179 29 29 chr13 58689483 58689790 -43183379 + AluJo SINE Alu 1 307 -5 200 111 28 0 chr13 58689800 58689836 -43183333 + G-rich Low_complexity Low_complexity 1 37 0 920 233 69 0 chr13 58690178 58690423 -43182746 + MER58B DNA MER1_type 80 341 0 1184 204 6 89 chr13 58690691 58691015 -43182154 + AluJo SINE Alu 3 299 -3 24 32 0 0 chr13 58691015 58691046 -43182123 + AT_rich Low_complexity Low_complexity 1 31 0 1730 179 10 13 chr13 58691596 58691897 -43181272 + AluSx SINE Alu 1 300 -12 40 21 0 0 chr13 58691897 58691944 -43181225 + AT_rich Low_complexity Low_complexity 1 47 0 237 274 195 9 chr13 58694724 58694837 -43178332 + MIR SINE MIR 115 248 -14 24 53 0 0 chr13 58694873 58694911 -43178258 + AT_rich Low_complexity Low_complexity 1 38 0 316 327 0 0 chr13 58695248 58695355 -43177814 - MIR SINE MIR -21 241 135 513 334 120 42 chr13 58695666 58696309 -43176860 + L2 LINE L2 2043 2735 -579 204 243 162 0 chr13 58696409 58696483 -43176686 + L2 LINE L2 3218 3303 -10 1994 148 3 0 chr13 58696882 58697180 -43175989 - AluSx SINE Alu -9 303 5 2158 99 0 3 chr13 58697484 58697793 -43175376 + AluSg SINE Alu 1 308 0 243 330 73 18 chr13 58698928 58699037 -43174132 - MIR SINE MIR -78 130 16 397 329 201 24 chr13 58701313 58701641 -43171528 + L3 LINE CR1 417 802 -775 305 224 40 0 chr13 58701710 58701786 -43171383 - L3 LINE CR1 -106 1471 1393 2159 167 30 0 chr13 58701936 58701986 -43171183 + Tigger1 DNA MER2_type 1 48 -2370 372 22 0 0 chr13 58701986 58702031 -43171138 + (TG)n Simple_repeat Simple_repeat 2 46 0 2159 167 30 0 chr13 58702031 58702375 -43170794 + Tigger1 DNA MER2_type 48 407 -2011 6566 130 56 12 chr13 58702519 58703061 -43170108 + Tigger1 DNA MER2_type 1173 1689 -729 2447 76 3 0 chr13 58703061 58703364 -43169805 + AluSp SINE Alu 1 304 -9 6566 130 56 12 chr13 58703364 58704014 -43169155 + Tigger1 DNA MER2_type 1689 2418 0 231 299 52 13 chr13 58704521 58704598 -43168571 + L3 LINE CR1 1497 1576 -1 833 143 0 0 chr13 58705164 58705283 -43167886 + FLAM_C SINE Alu 1 119 -14 324 296 26 72 chr13 58707680 58707832 -43165337 - L1ME3A LINE L1 -223 5947 5803 555 216 31 19 chr13 58707840 58708002 -43165167 + MER104 DNA Tc2 8 171 -9 826 229 0 27 chr13 58708002 58708190 -43164979 - MER58A DNA MER1_type 0 224 42 752 191 0 0 chr13 58708191 58708322 -43164847 + FLAM_C SINE Alu 1 131 -12 2251 115 0 13 chr13 58708976 58709280 -43163889 - AluSx SINE Alu -11 301 2 350 283 10 20 chr13 58709287 58709386 -43163783 - L2 LINE L2 -1 3271 3174 745 294 36 15 chr13 58709771 58710023 -43163146 - MIR SINE MIR 0 262 14 27 0 0 0 chr13 58710436 58710463 -43162706 + AT_rich Low_complexity Low_complexity 1 27 0 1444 191 33 36 chr13 58710500 58710861 -43162308 + MLT1A2 LTR MaLR 2 361 -13 191 388 122 0 chr13 58710895 58711041 -43162128 - MIR3 SINE MIR -89 173 13 237 379 10 39 chr13 58712152 58712255 -43160914 - MIR3 SINE MIR -108 100 1 298 288 144 9 chr13 58712432 58712543 -43160626 + MIR3 SINE MIR 36 161 -47 1068 80 7 13 chr13 58712793 58712944 -43160225 - L1PA10 LINE L1 -2 6166 6017 253 329 94 42 chr13 58712998 58713211 -43159958 - L2 LINE L2 -405 2909 2686 2421 98 20 0 chr13 58713257 58713615 -43159554 - L1P5 LINE L1 -352 5804 5440 1487 186 61 10 chr13 58714153 58714449 -43158720 - AluSx SINE Alu -1 311 1 211 333 0 0 chr13 58714604 58714676 -43158493 + L2 LINE L2 2207 2278 -1036 585 300 173 32 chr13 58714684 58714896 -43158273 + L2 LINE L2 2430 2611 -702 1768 103 28 115 chr13 58714896 58715217 -43157952 - AluSg SINE Alu -17 293 1 585 300 173 32 chr13 58715217 58715774 -43157395 + L2 LINE L2 2611 3304 -9 281 213 66 0 chr13 58716255 58716316 -43156853 - MER91C DNA MER1_type -42 98 34 2948 87 47 7 chr13 58717789 58718216 -43154953 - L1PB1 LINE L1 0 6151 5708 26 50 0 0 chr13 58718305 58718345 -43154824 + AT_rich Low_complexity Low_complexity 1 40 0 521 184 18 9 chr13 58719204 58719318 -43153851 + L1PB4 LINE L1 6041 6155 -1 731 147 7 52 chr13 58720229 58720365 -43152804 - FLAM_A SINE Alu -3 130 1 24 53 0 0 chr13 58721527 58721565 -43151604 + AT_rich Low_complexity Low_complexity 1 38 0 1530 157 43 50 chr13 58722507 58722788 -43150381 - AluJo SINE Alu -33 279 1 1053 210 57 80 chr13 58723440 58723974 -43149195 + MER34B LTR ERV1 1 564 -1 245 353 129 0 chr13 58725491 58725607 -43147562 + L2 LINE L2 3141 3271 -1 207 289 12 24 chr13 58726035 58726118 -43147051 + MIR SINE MIR 106 187 -75 1042 256 20 8 chr13 58730237 58730483 -43142686 + MIR SINE MIR 13 261 -1 524 300 126 5 chr13 58730832 58731022 -43142147 - MIR SINE MIR -12 250 38 1103 273 171 37 chr13 58731390 58731991 -43141178 + L2 LINE L2 1812 2493 -821 23 33 0 0 chr13 58732336 58732366 -43140803 + AT_rich Low_complexity Low_complexity 1 30 0 2168 111 3 3 chr13 58732690 58732987 -43140182 - AluSx SINE Alu -15 297 1 394 228 90 69 chr13 58733360 58733505 -43139664 + L2 LINE L2 3158 3305 -8 267 340 0 47 chr13 58733510 58733616 -43139553 + L2 LINE L2 3136 3236 -36 338 350 95 79 chr13 58733763 58734080 -43139089 - L2 LINE L2 0 3272 2951 250 207 86 0 chr13 58734356 58734414 -43138755 - L2 LINE L2 0 3313 3251 801 147 7 15 chr13 58735938 58736074 -43137095 + AluJb SINE Alu 1 135 -177 1951 142 3 3 chr13 58736074 58736363 -43136806 + AluJb SINE Alu 1 289 -23 21 0 0 0 chr13 58736421 58736442 -43136727 + AT_rich Low_complexity Low_complexity 1 21 0 617 274 129 54 chr13 58737346 58737587 -43135582 - MIR SINE MIR -1 261 3 1539 210 10 19 chr13 58737840 58738149 -43135020 - AluJo SINE Alu -1 311 6 4076 64 31 5 chr13 58740069 58740678 -43132491 + L1PA8 LINE L1 5364 5988 -184 352 292 18 35 chr13 58741015 58741128 -43132041 - MIR SINE MIR -65 143 33 2296 94 0 3 chr13 58741394 58741693 -43131476 - AluSc SINE Alu -11 298 1 253 310 69 58 chr13 58742044 58742127 -43131042 + MIR SINE MIR 56 137 -125 1940 93 70 11 chr13 58742127 58742446 -43130723 - AluSp SINE Alu 0 335 1 253 310 69 58 chr13 58742446 58742535 -43130634 + MIR SINE MIR 137 231 -31 4724 203 103 16 chr13 58742590 58743984 -43129185 - L1MB7 LINE L1 -32 6152 4473 2274 99 3 0 chr13 58743984 58744286 -43128883 - AluSx SINE Alu -9 303 1 4724 203 103 16 chr13 58744286 58745225 -43127944 - L1MB7 LINE L1 -1711 4473 3617 21 36 0 0 chr13 58746816 58746844 -43126325 + AT_rich Low_complexity Low_complexity 1 28 0 181 311 0 16 chr13 58746891 58746952 -43126217 - L2 LINE L2 -181 3091 3032 231 346 51 62 chr13 58747240 58747497 -43125672 - L2 LINE L2 -608 2706 2453 2315 95 0 20 chr13 58748373 58748679 -43124490 - AluSq SINE Alu -13 300 1 374 176 22 55 chr13 58748681 58748772 -43124397 - MIR SINE MIR -113 149 62 229 241 37 0 chr13 58748788 58748842 -43124327 + L2 LINE L2 3244 3299 -14 1114 270 126 38 chr13 58748884 58749418 -43123751 + L2 LINE L2 2092 2672 -642 3145 182 34 38 chr13 58749425 58750165 -43123004 - L1MB4 LINE L1 -6 6174 5438 710 269 77 80 chr13 58750176 58750736 -43122433 + L2 LINE L2 2707 3276 -37 612 243 117 33 chr13 58750982 58751226 -43121943 - MIR SINE MIR 0 262 1 1817 163 0 33 chr13 58751295 58751595 -43121574 + AluJo SINE Alu 1 290 -22 194 371 41 57 chr13 58751702 58751896 -43121273 - L2 LINE L2 -167 3105 2915 371 279 51 38 chr13 58751978 58752136 -43121033 - MIR SINE MIR 0 262 103 186 133 0 0 chr13 58752228 58752258 -43120911 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 58753506 58753527 -43119642 + AT_rich Low_complexity Low_complexity 1 21 0 444 282 68 0 chr13 58753707 58753824 -43119345 + MIR3 SINE MIR 84 208 0 309 326 0 0 chr13 58754330 58754419 -43118750 - L1MC4 LINE L1 -1339 6703 6615 * 317 287 23 0 chr13 58754345 58754432 -43118737 + L1MC4 LINE L1 6615 6703 -1339 2160 95 7 30 chr13 58754445 58754741 -43118428 - AluSx SINE Alu -23 289 1 592 228 54 60 chr13 58755152 58755242 -43117927 + MIR SINE MIR 70 159 -103 2049 137 3 0 chr13 58755242 58755566 -43117603 + AluSx SINE Alu 1 325 0 592 228 54 60 chr13 58755566 58755657 -43117512 + MIR SINE MIR 159 252 -10 292 83 21 21 chr13 58756305 58756353 -43116816 + MLT1A1 LTR MaLR 1 48 -317 1744 172 10 3 chr13 58756424 58756727 -43116442 + MLT1A1 LTR MaLR 61 365 0 731 178 7 22 chr13 58756795 58756930 -43116239 - FLAM_C SINE Alu 0 133 1 313 346 40 0 chr13 58758127 58758228 -43114941 - L2 LINE L2 0 3272 3168 358 304 40 8 chr13 58758734 58758859 -43114310 - MIR SINE MIR 0 262 134 273 0 21 64 chr13 58758865 58758912 -43114257 - THE1-int LTR MaLR 0 1580 1536 353 253 53 0 chr13 58758912 58759007 -43114162 - MIR SINE MIR -62 200 101 192 324 67 38 chr13 58760552 58760657 -43112512 + MIR SINE MIR 78 185 -77 209 353 90 0 chr13 58763208 58763364 -43109805 - L2 LINE L2 -1021 2293 2124 188 382 27 0 chr13 58763544 58763654 -43109515 + L2 LINE L2 2377 2489 -825 355 379 77 29 chr13 58763928 58764268 -43108901 + L2 LINE L2 2916 3271 -1 305 214 0 12 chr13 58764351 58764435 -43108734 + (TA)n Simple_repeat Simple_repeat 1 83 0 768 210 35 0 chr13 58764628 58764828 -43108341 + L1MD3 LINE L1 7775 7981 -14 2300 118 0 0 chr13 58765026 58765330 -43107839 - AluSx SINE Alu -8 304 1 22 0 0 0 chr13 58766223 58766245 -43106924 + AT_rich Low_complexity Low_complexity 1 22 0 2315 101 3 0 chr13 58767539 58767845 -43105324 + AluSp SINE Alu 1 307 -6 2269 103 3 7 chr13 58767964 58768274 -43104895 + AluSq SINE Alu 3 311 -2 1737 129 6 60 chr13 58768459 58768777 -43104392 - AluJb SINE Alu -11 301 1 311 264 140 29 chr13 58768801 58768949 -43104220 - MIR SINE MIR -63 145 23 1881 241 58 72 chr13 58769211 58769929 -43103240 + MER21B LTR ERV1 20 727 -136 1954 97 62 0 chr13 58769953 58770243 -43102926 + Tigger1 DNA MER2_type 1469 1776 -642 1356 127 19 0 chr13 58770363 58770576 -43102593 - L1PB1 LINE L1 -7 6144 5928 2245 69 62 0 chr13 58770584 58770874 -43102295 - AluSp SINE Alu -5 308 1 3126 151 39 48 chr13 58770875 58771499 -43101670 + Tigger1 DNA MER2_type 1799 2416 -2 24 53 0 0 chr13 58771948 58771986 -43101183 + AT_rich Low_complexity Low_complexity 1 38 0 557 279 19 32 chr13 58772203 58772361 -43100808 + MIR SINE MIR 5 160 -102 2690 138 17 10 chr13 58773259 58773739 -43099430 + L1MA4 LINE L1 5814 6296 -4 2345 76 0 20 chr13 58774744 58775047 -43098122 - AluY SINE Alu -14 297 1 1931 144 7 0 chr13 58775230 58775514 -43097655 - AluJb SINE Alu -15 297 12 348 317 123 22 chr13 58775577 58775804 -43097365 + L2 LINE L2 2233 2482 -832 1357 171 3 122 chr13 58776712 58777056 -43096113 + AluSq SINE Alu 1 303 0 391 300 95 48 chr13 58777305 58777515 -43095654 - MIR SINE MIR -13 249 30 184 289 0 53 chr13 58777496 58777572 -43095597 + L2 LINE L2 3240 3311 -2 * 555 305 76 5 chr13 58777606 58777816 -43095353 - MIR SINE MIR -13 249 25 24 0 0 0 chr13 58778743 58778767 -43094402 + AT_rich Low_complexity Low_complexity 1 24 0 2553 50 0 0 chr13 58779779 58780081 -43093088 - AluY SINE Alu -9 302 1 206 279 156 25 chr13 58780100 58780222 -43092947 + MIR SINE MIR 122 259 -3 37 76 0 0 chr13 58780396 58780475 -43092694 + AT_rich Low_complexity Low_complexity 1 79 0 25 51 0 0 chr13 58782405 58782444 -43090725 + AT_rich Low_complexity Low_complexity 1 39 0 600 206 31 31 chr13 58782680 58782840 -43090329 + L1ME3 LINE L1 5996 6155 -7 180 308 0 0 chr13 58783237 58783289 -43089880 - MIR SINE MIR -6 256 205 23 33 0 0 chr13 58783473 58783503 -43089666 + AT_rich Low_complexity Low_complexity 1 30 0 280 320 74 8 chr13 58784088 58784210 -43088959 - MIR3 SINE MIR -22 186 57 2222 114 3 0 chr13 58784281 58784579 -43088590 + AluSx SINE Alu 1 299 -13 186 338 50 38 chr13 58785482 58785562 -43087607 + L2 LINE L2 3191 3271 -1 369 0 0 0 chr13 58786607 58786648 -43086521 + (TG)n Simple_repeat Simple_repeat 2 42 0 1682 196 159 23 chr13 58786742 58787258 -43085911 + L1ME2 LINE L1 5569 6154 -10 1858 160 10 3 chr13 58787588 58787888 -43085281 + AluJo SINE Alu 1 302 -10 5697 112 17 2 chr13 58788246 58789513 -43083656 + L1PA14 LINE L1 4868 6149 -12 27 0 0 0 chr13 58789520 58789547 -43083622 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 58792544 58792573 -43080596 + AT_rich Low_complexity Low_complexity 1 29 0 2368 105 21 26 chr13 58792573 58792954 -43080215 - L1PA16 LINE L1 -9 6157 5779 843 266 26 89 chr13 58793415 58793798 -43079371 + L2 LINE L2 2919 3277 -36 405 0 0 0 chr13 58793874 58793919 -43079250 + (CA)n Simple_repeat Simple_repeat 1 45 0 320 287 120 9 chr13 58793935 58794043 -43079126 - MER91C DNA MER1_type -8 132 13 206 299 172 49 chr13 58794068 58794272 -43078897 + L2 LINE L2 2701 2929 -385 205 258 97 0 chr13 58794364 58794426 -43078743 + L2 LINE L2 3153 3220 -52 1329 214 39 0 chr13 58795440 58795697 -43077472 + AluJb SINE Alu 2 268 -44 245 91 0 0 chr13 58795708 58795741 -43077428 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 2060 104 42 0 chr13 58795942 58796231 -43076938 - AluSq SINE Alu -12 301 1 726 189 16 0 chr13 58796231 58796358 -43076811 - FLAM_A SINE Alu -4 129 1 240 122 0 0 chr13 58796469 58796510 -43076659 + (A)n Simple_repeat Simple_repeat 1 41 0 216 274 118 29 chr13 58796514 58796616 -43076553 + MIR SINE MIR 84 194 -68 2252 101 0 7 chr13 58796856 58797154 -43076015 + AluSq SINE Alu 1 296 -17 36 23 0 0 chr13 58799341 58799384 -43073785 + AT_rich Low_complexity Low_complexity 1 43 0 24 85 0 0 chr13 58799423 58799482 -43073687 + AT_rich Low_complexity Low_complexity 1 59 0 2118 117 3 0 chr13 58799796 58800087 -43073082 + AluSx SINE Alu 1 292 -20 231 36 0 0 chr13 58800266 58800294 -43072875 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 681 87 0 0 chr13 58800308 58800400 -43072769 - AluY SINE Alu -226 92 1 2154 108 14 0 chr13 58800811 58801099 -43072070 - AluSg SINE Alu -1 309 18 281 250 103 0 chr13 58801176 58801281 -43071888 + MIR SINE MIR 43 152 -63 187 154 19 19 chr13 58801321 58801373 -43071796 + (CTA)n Simple_repeat Simple_repeat 1 52 0 329 303 119 32 chr13 58801374 58801592 -43071577 - MIR SINE MIR 0 262 26 1859 179 42 10 chr13 58801964 58802367 -43070802 + L1MA9 LINE L1 5897 6312 0 254 206 32 0 chr13 58804207 58804270 -43068899 + MER116 DNA Mariner 8 72 -8 982 195 4 58 chr13 58804507 58804733 -43068436 + MER20 DNA MER1_type 2 215 -4 292 260 40 73 chr13 58805143 58805293 -43067876 - LTR67 LTR ERVL -2 555 411 433 267 117 61 chr13 58806505 58806865 -43066304 + MLT1H LTR MaLR 119 498 -51 1989 152 0 13 chr13 58806865 58807181 -43065988 + AluJo SINE Alu 1 312 0 229 235 0 0 chr13 58807212 58807263 -43065906 + MLT1H LTR MaLR 529 579 -11 1534 248 33 8 chr13 58807367 58807758 -43065411 + MER57A LTR ERV1 3 403 0 1070 150 6 0 chr13 58807974 58808141 -43065028 - AluSg/x SINE Alu -8 302 135 321 281 203 16 chr13 58808955 58809147 -43064022 + MIR SINE MIR 16 243 -19 776 268 70 34 chr13 58809348 58809676 -43063493 - L2 LINE L2 0 3313 2974 435 238 33 46 chr13 58809790 58809941 -43063228 - L2 LINE L2 -498 2816 2668 575 219 187 16 chr13 58810680 58810867 -43062302 + MER58A DNA MER1_type 1 219 -5 237 242 134 101 chr13 58810878 58811184 -43061985 + L2 LINE L2 2033 2348 -966 737 188 0 8 chr13 58812223 58812351 -43060818 + FLAM_C SINE Alu 1 127 -16 2114 113 10 7 chr13 58813491 58813784 -43059385 - AluSq SINE Alu -19 294 1 2273 102 0 3 chr13 58814560 58814855 -43058314 + AluSq SINE Alu 1 294 -19 2403 61 0 3 chr13 58815752 58816047 -43057122 - AluY SINE Alu -17 294 1 367 253 30 84 chr13 58816491 58816538 -43056631 - L1ME1 LINE L1 -215 5951 5903 207 0 0 0 chr13 58816538 58816561 -43056608 + (CA)n Simple_repeat Simple_repeat 2 24 0 1867 167 3 0 chr13 58816567 58816855 -43056314 - AluJb SINE Alu -23 289 1 367 253 30 84 chr13 58816855 58816966 -43056203 - L1ME1 LINE L1 -268 5898 5795 283 266 47 21 chr13 58817068 58817189 -43055980 - L1ME1 LINE L1 -526 5595 5485 2004 137 13 13 chr13 58817328 58817635 -43055534 - AluSx SINE Alu -3 309 3 320 296 192 33 chr13 58817831 58818071 -43055098 - HAL1 LINE L1 -857 1650 1373 189 309 315 6 chr13 58818236 58818401 -43054768 + L2 LINE L2 2428 2643 -671 218 246 0 31 chr13 58819283 58819348 -43053821 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 306 0 0 0 chr13 58820765 58820799 -43052370 + (CA)n Simple_repeat Simple_repeat 2 35 0 413 252 168 18 chr13 58820941 58821167 -43052002 + MIR SINE MIR 3 262 0 22 35 0 0 chr13 58821167 58821196 -43051973 + AT_rich Low_complexity Low_complexity 1 29 0 342 314 102 0 chr13 58823744 58823862 -43049307 - L2 LINE L2 0 3313 3184 2248 103 0 3 chr13 58824227 58824529 -43048640 - AluSq SINE Alu -12 301 1 1719 161 151 6 chr13 58824719 58825043 -43048126 - MSTA LTR MaLR -57 371 1 7528 196 27 12 chr13 58825043 58826494 -43046675 - MSTA-int LTR MaLR 0 1651 180 608 176 163 0 chr13 58826594 58826747 -43046422 - MSTA LTR MaLR -250 178 1 548 189 0 94 chr13 58826749 58826876 -43046293 - L1PA16 LINE L1 -58 6108 5994 388 311 121 32 chr13 58827177 58827425 -43045744 - MLT1I LTR MaLR -138 271 2 3536 153 37 98 chr13 58828669 58829200 -43043969 - L1PB4 LINE L1 -7 6149 5611 529 95 0 0 chr13 58829200 58829274 -43043895 + MADE1 DNA Mariner 7 80 0 3536 153 37 98 chr13 58829274 58829524 -43043645 - L1PB4 LINE L1 -545 5611 5347 775 220 65 0 chr13 58829527 58829727 -43043442 - L1MA8 LINE L1 -17 6274 6062 481 265 92 5 chr13 58830165 58830350 -43042819 - MERVL LTR ERVL -1420 4065 3865 257 338 123 13 chr13 58830378 58830532 -43042637 - MERVL LTR ERVL -1912 3852 3682 616 133 0 0 chr13 58830553 58830651 -43042518 - L1PB4 LINE L1 -6 6150 6053 480 204 29 0 chr13 58830844 58830947 -43042222 - MER5A DNA MER1_type -77 112 7 255 279 148 25 chr13 58830982 58831104 -43042065 - MERVL LTR ERVL -2984 2780 2644 500 269 44 47 chr13 58831754 58832051 -43041118 + L1MC/D LINE L1 1295 1590 -4950 26 0 0 0 chr13 58832751 58832777 -43040392 + AT_rich Low_complexity Low_complexity 1 26 0 2265 258 24 20 chr13 58835379 58836629 -43036540 + L1MC/D LINE L1 4962 6212 -743 1682 134 57 51 chr13 58836703 58837038 -43036131 - THE1B LTR MaLR 0 364 28 1682 281 79 41 chr13 58837208 58838018 -43035151 - MER110-int LTR ERV1 -1434 3213 2373 1091 193 89 55 chr13 58838132 58838458 -43034711 + MER2 DNA MER2_type 9 345 0 342 312 67 70 chr13 58838728 58838889 -43034280 - MER110-int LTR ERV1 -2707 1940 1779 1754 155 58 22 chr13 58838889 58839251 -43033918 - THE1C LTR MaLR 0 375 1 342 312 67 70 chr13 58839251 58839387 -43033782 - MER110-int LTR ERV1 -2868 1779 1644 2382 86 0 3 chr13 58839389 58839692 -43033477 - AluSx SINE Alu 0 312 11 428 35 17 0 chr13 58840301 58840359 -43032810 + (TC)n Simple_repeat Simple_repeat 2 60 0 * 433 168 26 26 chr13 58840358 58840513 -43032656 + (TA)n Simple_repeat Simple_repeat 2 156 0 2072 200 54 7 chr13 58840615 58841020 -43032149 - MSTB LTR MaLR 0 426 3 7072 195 65 33 chr13 58841026 58842622 -43030547 - MSTB-int LTR MaLR -4 1647 1 834 211 12 6 chr13 58842622 58842788 -43030381 - MSTB LTR MaLR 0 426 260 3405 204 41 64 chr13 58843456 58844428 -43028741 - L1MC3 LINE L1 -964 6821 5872 2022 134 50 34 chr13 58844428 58844786 -43028383 + THE1B LTR MaLR 1 364 0 7610 139 9 2 chr13 58844786 58845936 -43027233 + THE1B-int LTR MaLR 1 1158 -422 791 221 101 121 chr13 58846327 58846809 -43026360 + LTR28 LTR ERV1 8 602 -418 1077 243 104 25 chr13 58846816 58847347 -43025822 + L1M4 LINE L1 3528 4100 -2046 310 277 47 43 chr13 58847381 58847616 -43025553 + L1M4 LINE L1 4178 4413 -1733 3851 185 40 24 chr13 58847655 58848476 -43024693 + L1M4c LINE L1 20 853 -5531 430 314 101 49 chr13 58848663 58848950 -43024219 + L3 LINE CR1 562 863 -714 22 0 0 0 chr13 58849374 58849396 -43023773 + AT_rich Low_complexity Low_complexity 1 22 0 215 308 103 56 chr13 58849433 58849540 -43023629 - L2 LINE L2 -18 3295 3184 24 77 0 0 chr13 58849838 58849890 -43023279 + AT_rich Low_complexity Low_complexity 1 52 0 1947 227 121 40 chr13 58850513 58851139 -43022030 + L1MC3 LINE L1 6705 7381 -404 773 247 24 84 chr13 58851139 58851471 -43021698 + MER52A LTR ERV1 659 970 -785 15603 78 7 25 chr13 58851591 58853849 -43019320 - HERVH LTR ERV1 -4888 2825 609 305 176 0 0 chr13 58853851 58853902 -43019267 - HERVH LTR ERV1 -7065 648 598 370 400 40 0 chr13 58854147 58854297 -43018872 + L2 LINE L2 3117 3272 0 2058 117 0 17 chr13 58855080 58855380 -43017789 - AluSg SINE Alu -15 295 1 525 328 17 6 chr13 58855395 58855569 -43017600 - MIR SINE MIR -76 186 11 32 57 0 0 chr13 58855859 58855912 -43017257 + AT_rich Low_complexity Low_complexity 1 53 0 282 368 38 8 chr13 58858256 58858389 -43014780 - L2 LINE L2 0 3272 3136 182 216 0 0 chr13 58858935 58858972 -43014197 - L2 LINE L2 0 3272 3236 259 72 72 24 chr13 58860319 58860402 -43012767 + (TA)n Simple_repeat Simple_repeat 2 88 0 999 120 25 6 chr13 58861016 58861174 -43011995 + AluSg/x SINE Alu 147 307 -5 23 33 0 0 chr13 58861819 58861849 -43011320 + AT_rich Low_complexity Low_complexity 1 30 0 347 330 64 17 chr13 58862726 58862899 -43010270 + MIR SINE MIR 32 212 -50 1166 74 34 0 chr13 58864273 58864422 -43008747 + AluSx SINE Alu 1 154 -158 215 59 0 29 chr13 58864619 58864653 -43008516 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1896 156 0 3 chr13 58864655 58864937 -43008232 - AluSx SINE Alu -29 283 3 334 193 68 88 chr13 58865757 58866005 -43007164 + MER112 DNA MER1_type 1 217 -43 1712 180 0 33 chr13 58869221 58869527 -43003642 - AluJb SINE Alu -13 299 4 204 286 143 0 chr13 58869753 58869830 -43003339 - L2 LINE L2 -1642 1672 1585 910 277 47 12 chr13 58869987 58870308 -43002861 + L2 LINE L2 1650 1981 -1333 609 221 0 39 chr13 58871198 58871325 -43001844 - FLAM_A SINE Alu -11 122 1 238 254 114 44 chr13 58871816 58871930 -43001239 + L2 LINE L2 3158 3279 -34 343 291 50 37 chr13 58872512 58872679 -43000490 + MIR3 SINE MIR 31 201 -7 212 293 112 35 chr13 58872770 58872886 -43000283 + MIR SINE MIR 25 149 -113 210 316 41 20 chr13 58873967 58874065 -42999104 + L2 LINE L2 3195 3294 -19 2319 106 0 0 chr13 58875389 58875692 -42997477 - AluSc SINE Alu -6 303 1 2066 282 103 21 chr13 58875712 58876654 -42996515 + L1MEc LINE L1 31 1049 -5347 286 167 5 0 chr13 58876657 58876704 -42996465 - MSTB LTR MaLR 0 428 378 1584 147 76 0 chr13 58876704 58876975 -42996194 + AluJb SINE Alu 15 304 0 1100 174 148 8 chr13 58876975 58877211 -42995958 - MSTB LTR MaLR -157 269 1 504 234 76 93 chr13 58877229 58877313 -42995856 + L1MEc LINE L1 1062 1146 -5069 1908 138 0 31 chr13 58877313 58877603 -42995566 + AluSx SINE Alu 1 281 -31 378 0 0 0 chr13 58877609 58877651 -42995518 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 504 234 76 93 chr13 58877651 58878047 -42995122 + L1MEc LINE L1 1151 1508 -4707 * 890 243 97 62 chr13 58878040 58878505 -42994664 + L1MEc LINE L1 1714 2194 -4202 1213 140 48 4 chr13 58878540 58878768 -42994401 + L1MB2 LINE L1 5932 6169 -2 23 54 0 0 chr13 58879134 58879171 -42993998 + AT_rich Low_complexity Low_complexity 1 37 0 358 249 57 57 chr13 58879280 58879457 -42993712 + L1MEc LINE L1 2335 2511 -3704 196 282 77 13 chr13 58879527 58879605 -42993564 - MIR SINE MIR -95 113 31 1874 102 38 4 chr13 58881445 58881710 -42991459 + AluSp SINE Alu 1 274 -39 1590 185 56 34 chr13 58882311 58882668 -42990501 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 58883257 58883278 -42989891 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 58884205 58884233 -42988936 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr13 58886377 58886426 -42986743 + AT_rich Low_complexity Low_complexity 1 49 0 448 273 125 54 chr13 58886512 58886864 -42986305 - L1MC4 LINE L1 -144 7898 7522 2167 99 7 3 chr13 58886883 58887177 -42985992 - AluSq SINE Alu -18 295 1 1865 236 47 42 chr13 58887179 58887350 -42985819 - L1MC4 LINE L1 -658 7384 7215 2306 105 0 0 chr13 58887350 58887655 -42985514 - AluSg SINE Alu -5 305 1 1865 236 47 42 chr13 58887655 58888119 -42985050 - L1MC4 LINE L1 -827 7215 6746 2336 198 153 20 chr13 58888157 58888829 -42984340 - LTR48 LTR ERV1 0 757 17 521 232 32 75 chr13 58888919 58888973 -42984196 - L1MC4a LINE L1 -1190 6618 6563 1880 158 3 0 chr13 58888973 58889257 -42983912 - AluSx SINE Alu -27 285 1 521 232 32 75 chr13 58889257 58889421 -42983748 - L1MC4a LINE L1 -1245 6563 6443 216 396 89 10 chr13 58889764 58889865 -42983304 - L2 LINE L2 -26 3246 3138 1704 167 17 13 chr13 58890225 58890524 -42982645 - AluJo SINE Alu -10 302 3 23 0 0 0 chr13 58891717 58891740 -42981429 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr13 58891850 58891877 -42981292 + (CA)n Simple_repeat Simple_repeat 2 28 0 212 212 57 93 chr13 58892515 58892592 -42980577 - MIR SINE MIR -60 148 89 1859 170 3 3 chr13 58893907 58894201 -42978968 + AluJo SINE Alu 5 298 -14 2174 129 3 0 chr13 58894692 58895002 -42978167 + AluSq SINE Alu 1 311 -2 222 333 194 0 chr13 58895028 58895121 -42978048 - L2 LINE L2 -18 3254 3144 240 94 0 0 chr13 58895472 58895504 -42977665 + Alu SINE Alu 142 173 -127 27 0 0 0 chr13 58895852 58895879 -42977290 + AT_rich Low_complexity Low_complexity 1 27 0 194 220 51 34 chr13 58895942 58896001 -42977168 - MIR3 SINE MIR -7 201 142 401 280 33 44 chr13 58896382 58896564 -42976605 - MLT1L LTR MaLR -3 612 433 771 163 88 89 chr13 58896717 58896942 -42976227 - L1M LINE L1 -742 5424 5200 1861 124 15 0 chr13 58896942 58897216 -42975953 - AluSx SINE Alu 0 312 35 771 163 88 89 chr13 58897216 58897280 -42975889 - L1M LINE L1 -966 5200 5138 2312 83 0 26 chr13 58897280 58897582 -42975587 - AluY SINE Alu -15 296 3 771 163 88 89 chr13 58897582 58897607 -42975562 - L1M LINE L1 -1028 5138 5114 1640 201 20 11 chr13 58897609 58897962 -42975207 - L1MC1 LINE L1 -19 6314 5959 1523 138 4 19 chr13 58897963 58898231 -42974938 + L1MC1 LINE L1 5709 5972 -361 * 1718 249 25 8 chr13 58898225 58898711 -42974458 - L1MC/D LINE L1 -1010 5136 4643 957 230 27 0 chr13 58898729 58899051 -42974118 + L1MC/D LINE L1 5132 5463 -743 397 235 10 0 chr13 58899052 58899150 -42974019 - L1MC1 LINE L1 -1489 4657 4559 * 570 202 0 0 chr13 58899147 58899246 -42973923 + L1MC1 LINE L1 6169 6267 -66 * 2892 220 51 26 chr13 58899238 58900105 -42973064 - L1MC1 LINE L1 -1589 4557 3670 253 327 65 55 chr13 58900750 58900949 -42972220 - MIR SINE MIR -42 220 20 1389 176 144 0 chr13 58901064 58901320 -42971849 + AluSx SINE Alu 1 293 -9 262 330 0 30 chr13 58901868 58901968 -42971201 - MIR SINE MIR -68 140 44 234 291 78 68 chr13 58901965 58902068 -42971101 + L2 LINE L2 3145 3248 -24 * 25 0 0 0 chr13 58902239 58902264 -42970905 + AT_rich Low_complexity Low_complexity 1 25 0 2556 147 19 14 chr13 58902513 58902943 -42970226 + Tigger2a DNA MER2_type 1 432 -2 3399 28 5 0 chr13 58903055 58903481 -42969688 + L1PA3 LINE L1 5736 6163 0 34 79 0 0 chr13 58903537 58903613 -42969556 + AT_rich Low_complexity Low_complexity 1 76 0 21 0 0 0 chr13 58903625 58903646 -42969523 + AT_rich Low_complexity Low_complexity 1 21 0 445 325 24 6 chr13 58903758 58903927 -42969242 + MER5A DNA MER1_type 18 189 0 441 353 58 5 chr13 58903962 58904152 -42969017 + MIR SINE MIR 45 244 -18 294 206 14 14 chr13 58905839 58905912 -42967257 + MER116 DNA Mariner 5 77 -3 426 20 0 0 chr13 58906048 58906099 -42967070 + (TG)n Simple_repeat Simple_repeat 2 52 0 1502 158 35 11 chr13 58906102 58906362 -42966807 - AluJb SINE Alu -46 266 1 1388 146 0 23 chr13 58907327 58907547 -42965622 - AluJo SINE Alu -97 215 1 194 269 104 0 chr13 58907961 58908028 -42965141 + L2 LINE L2 3196 3269 -3 268 341 118 18 chr13 58908261 58908431 -42964738 - MIR SINE MIR -15 247 61 246 337 0 34 chr13 58908938 58909027 -42964142 - MER5A DNA MER1_type -35 154 69 426 134 0 61 chr13 58909073 58909155 -42964014 - L1MB2 LINE L1 -39 6132 6056 1472 178 18 50 chr13 58909155 58909436 -42963733 - AluJo SINE Alu -40 272 1 2741 135 41 2 chr13 58909444 58909904 -42963265 - L1MB2 LINE L1 -248 5923 5446 1373 149 89 4 chr13 58910181 58910462 -42962707 - L1MB3 LINE L1 -2 6181 5877 280 208 13 26 chr13 58910634 58910711 -42962458 + HsTC2 DNA Tc2 1794 1869 -29 187 359 19 39 chr13 58911969 58912072 -42961097 - MIR3 SINE MIR -103 105 5 1150 165 36 157 chr13 58912302 58912326 -42960843 + MLT1A1 LTR MaLR 1 26 -339 4541 88 2 3 chr13 58912326 58912950 -42960219 + L1PA14 LINE L1 5536 6158 -3 1150 165 36 157 chr13 58912950 58913338 -42959831 + MLT1A1 LTR MaLR 26 363 -2 687 132 16 8 chr13 58913418 58913539 -42959630 - L1MB8 LINE L1 -5 6173 6052 242 226 0 0 chr13 58913567 58913620 -42959549 - L1MB8 LINE L1 -604 5755 5703 429 257 27 75 chr13 58914020 58914207 -42958962 - MER5B DNA MER1_type 0 178 1 246 217 72 29 chr13 58914488 58914557 -42958612 - L2 LINE L2 0 3313 3242 625 78 0 0 chr13 58914872 58914962 -42958207 + L1PA14 LINE L1 6069 6158 -3 426 107 5 0 chr13 58914968 58915036 -42958133 + MLT1A1 LTR MaLR 39 111 -254 2254 138 11 6 chr13 58916357 58916719 -42956450 - THE1B LTR MaLR 0 364 1 1388 163 97 4 chr13 58916879 58917136 -42956033 - AluJo SINE Alu -30 282 2 387 0 0 0 chr13 58917185 58917228 -42955941 + (TA)n Simple_repeat Simple_repeat 1 43 0 2376 59 0 23 chr13 58917881 58918187 -42954982 - AluY SINE Alu -12 299 1 520 346 113 12 chr13 58919279 58919839 -42953330 + L2 LINE L2 1913 2528 -786 814 211 132 14 chr13 58920250 58920463 -42952706 + MER8 DNA MER2_type 1 238 -1 367 314 81 8 chr13 58920494 58920618 -42952551 + L2 LINE L2 3121 3253 -19 2055 154 0 0 chr13 58920735 58921041 -42952128 + AluSx SINE Alu 1 306 -6 29 28 0 0 chr13 58922908 58922944 -42950225 + AT_rich Low_complexity Low_complexity 1 36 0 1297 172 39 21 chr13 58922979 58923212 -42949957 - AluJo SINE Alu -75 237 1 207 0 0 0 chr13 58924367 58924390 -42948779 + (TG)n Simple_repeat Simple_repeat 2 24 0 183 310 180 0 chr13 58924748 58924848 -42948321 + MIR3 SINE MIR 82 199 -9 196 314 0 0 chr13 58925241 58925292 -42947877 + L2 LINE L2 3222 3272 0 648 321 27 5 chr13 58928242 58928463 -42944706 + MIR SINE MIR 12 237 -25 4476 212 74 12 chr13 58928774 58929028 -42944141 + L1PB4 LINE L1 4102 4339 -1817 324 0 0 0 chr13 58929028 58929064 -42944105 + (CA)n Simple_repeat Simple_repeat 1 36 0 4476 212 74 12 chr13 58929064 58930747 -42942422 + L1PB4 LINE L1 4339 6153 -3 2417 45 3 3 chr13 58930913 58931202 -42941967 + AluY SINE Alu 21 309 -2 277 207 138 0 chr13 58931224 58931282 -42941887 - MIR SINE MIR -118 144 79 2280 107 0 0 chr13 58931282 58931581 -42941588 + AluSx SINE Alu 1 299 -13 204 200 0 0 chr13 58933352 58933397 -42939772 + CT-rich Low_complexity Low_complexity 5 49 0 226 286 14 0 chr13 58934965 58935035 -42938134 + MIR3 SINE MIR 124 194 -14 769 266 58 0 chr13 58935932 58936139 -42937030 + MIR SINE MIR 13 231 -31 327 275 133 0 chr13 58937361 58937481 -42935688 - MIR SINE MIR -74 188 53 1492 144 11 0 chr13 58937514 58937777 -42935392 - L1MA6 LINE L1 0 6300 6035 405 39 0 0 chr13 58938170 58938221 -42934948 + (TG)n Simple_repeat Simple_repeat 2 52 0 2418 154 99 9 chr13 58938229 58938922 -42934247 - L1MA6 LINE L1 -509 5782 5044 797 295 110 69 chr13 58939040 58939550 -42933619 - HAL1 LINE L1 -658 1849 1362 234 0 0 0 chr13 58939550 58939576 -42933593 + (CAA)n Simple_repeat Simple_repeat 2 27 0 797 295 110 69 chr13 58939576 58940726 -42932443 - HAL1 LINE L1 -1145 1362 120 276 313 78 70 chr13 58941178 58941200 -42931969 - MLT1K LTR MaLR -23 565 545 900 245 77 69 chr13 58941200 58941707 -42931462 + MLT1J LTR MaLR 1 511 0 276 313 78 70 chr13 58941707 58941927 -42931242 - MLT1K LTR MaLR -43 545 321 2318 75 0 20 chr13 58941933 58942239 -42930930 - AluY SINE Alu -11 300 1 324 313 90 8 chr13 58942278 58942412 -42930757 - MLT1K LTR MaLR -347 241 97 23 33 0 0 chr13 58942636 58942666 -42930503 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 0 chr13 58943096 58943133 -42930036 + AT_rich Low_complexity Low_complexity 1 37 0 5082 178 22 53 chr13 58943212 58943391 -42929778 - L1MC3 LINE L1 0 7785 7602 2968 174 40 20 chr13 58943391 58943983 -42929186 - MER6A DNA MER2_type -1 604 1 5082 178 22 53 chr13 58943983 58944673 -42928496 - L1MC3 LINE L1 -183 7602 6957 2183 113 3 16 chr13 58944673 58944984 -42928185 - AluY SINE Alu -4 307 1 5082 178 22 53 chr13 58944984 58945251 -42927918 - L1MC3 LINE L1 -828 6957 6683 250 130 65 0 chr13 58945253 58945299 -42927870 - MIR SINE MIR -98 164 116 2237 120 0 0 chr13 58947226 58947527 -42925642 - AluSx SINE Alu -11 301 1 329 303 78 7 chr13 58947642 58947784 -42925385 - MIR SINE MIR -109 153 2 306 0 0 0 chr13 58947815 58947849 -42925320 + (TG)n Simple_repeat Simple_repeat 2 35 0 247 329 46 33 chr13 58948723 58948875 -42924294 - L2 LINE L2 -725 2589 2436 324 252 109 17 chr13 58949406 58949525 -42923644 + L2 LINE L2 3179 3308 -5 336 310 114 19 chr13 58949783 58949941 -42923228 + Tigger8 DNA MER2_type 32 204 -462 30 0 0 0 chr13 58950118 58950148 -42923021 + AT_rich Low_complexity Low_complexity 1 30 0 1374 204 44 14 chr13 58950190 58950484 -42922685 - AluJo SINE Alu -9 303 1 27 29 0 0 chr13 58950639 58950673 -42922496 + AT_rich Low_complexity Low_complexity 1 34 0 370 314 59 8 chr13 58951287 58951405 -42921764 + L2 LINE L2 3149 3272 0 1020 214 20 58 chr13 58951516 58951811 -42921358 - L1MD2 LINE L1 -65 6294 6011 2358 84 0 0 chr13 58952518 58952817 -42920352 - AluSg1 SINE Alu -10 299 1 198 226 97 16 chr13 58953704 58953766 -42919403 + MIR3 SINE MIR 10 76 -132 1056 201 18 19 chr13 58954356 58954652 -42918517 - MER2 DNA MER2_type -1 344 1 181 321 12 24 chr13 58954757 58954841 -42918328 - L2 LINE L2 -995 2319 2237 618 292 115 45 chr13 58955280 58955372 -42917797 + L1ME4a LINE L1 5273 5357 -764 2183 113 0 19 chr13 58955372 58955690 -42917479 + AluSx SINE Alu 1 312 0 618 292 115 45 chr13 58955690 58956186 -42916983 + L1ME4a LINE L1 5357 5897 -224 534 255 132 10 chr13 58956212 58956416 -42916753 - MIR SINE MIR -10 252 24 225 340 10 31 chr13 58957699 58957796 -42915373 - L3 LINE CR1 -5 1572 1478 323 291 36 92 chr13 58960581 58960803 -42912366 + MIR SINE MIR 52 260 -2 286 292 149 21 chr13 58961346 58961634 -42911535 - L1ME4a LINE L1 -239 5882 5558 252 161 18 0 chr13 58963093 58963149 -42910020 - L1MB3 LINE L1 -2 6181 6125 1045 163 172 5 chr13 58965952 58966173 -42906996 + MLT1C LTR MaLR 6 263 -204 198 0 0 0 chr13 58966276 58966298 -42906871 + (A)n Simple_repeat Simple_repeat 1 22 0 260 280 107 18 chr13 58967457 58967625 -42905544 + LTR67 LTR ERVL 356 538 -19 669 216 97 32 chr13 58967694 58967879 -42905290 + MIR SINE MIR 28 224 -38 258 296 34 11 chr13 58968303 58968391 -42904778 - MIR SINE MIR -112 150 61 2297 99 0 0 chr13 58969003 58969295 -42903874 + AluSc SINE Alu 1 292 -17 2045 80 0 42 chr13 58969298 58969586 -42903583 + AluY SINE Alu 28 303 -8 13717 143 30 6 chr13 58970572 58972935 -42900234 - Tigger1 DNA MER2_type 0 2418 1 280 283 33 42 chr13 58973351 58973471 -42899698 + MER5A DNA MER1_type 71 189 0 256 313 30 10 chr13 58974216 58974315 -42898854 + MER91A DNA MER1_type 18 118 -78 1239 191 50 50 chr13 58975796 58976115 -42897054 - LTR48 LTR ERV1 0 787 469 906 225 123 17 chr13 58976100 58976393 -42896776 - LTR48 LTR ERV1 -463 324 1 * 286 309 24 0 chr13 58976922 58977045 -42896124 + (TA)n Simple_repeat Simple_repeat 2 127 0 209 230 14 0 chr13 58979124 58979198 -42893971 + (TG)n Simple_repeat Simple_repeat 2 76 0 198 346 0 0 chr13 58979379 58979431 -42893738 - L2 LINE L2 -15 3298 3247 251 323 170 31 chr13 58979508 58979737 -42893432 - MIR SINE MIR 0 262 2 24 0 0 0 chr13 58980435 58980459 -42892710 + AT_rich Low_complexity Low_complexity 1 24 0 489 34 0 0 chr13 58980966 58981025 -42892144 + (TG)n Simple_repeat Simple_repeat 2 60 0 2269 72 0 62 chr13 58981402 58981723 -42891446 + AluY SINE Alu 1 301 -10 1861 200 81 31 chr13 58981847 58982328 -42890841 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr13 58983464 58983485 -42889684 + AT_rich Low_complexity Low_complexity 1 21 0 333 333 123 26 chr13 58984061 58984403 -42888766 - L2 LINE L2 -35 3237 2863 2091 160 62 22 chr13 58984477 58984926 -42888243 - MLT1C LTR MaLR 0 467 1 37 39 0 0 chr13 58985955 58986006 -42887163 + AT_rich Low_complexity Low_complexity 1 51 0 847 227 84 15 chr13 58986006 58986141 -42887028 - L1MA7 LINE L1 -12 6279 6155 2158 123 136 21 chr13 58986141 58986523 -42886646 - MSTC LTR MaLR -2 426 1 847 227 84 15 chr13 58986523 58986660 -42886509 - L1MA7 LINE L1 -136 6155 5988 213 380 0 0 chr13 58987098 58987169 -42886000 + MIR3 SINE MIR 15 85 -123 23 33 0 0 chr13 58987275 58987305 -42885864 + AT_rich Low_complexity Low_complexity 1 30 0 677 353 80 18 chr13 58987588 58988098 -42885071 + L3 LINE CR1 1031 1572 -5 441 201 231 41 chr13 58988281 58988450 -42884719 - L2 LINE L2 0 3313 3113 2173 112 10 0 chr13 58988454 58988757 -42884412 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr13 58989402 58989432 -42883737 + AT_rich Low_complexity Low_complexity 1 30 0 347 330 64 17 chr13 58990309 58990482 -42882687 + MIR SINE MIR 32 212 -50 2263 75 17 0 chr13 58991856 58992149 -42881020 + AluSx SINE Alu 1 298 -14 2086 114 21 7 chr13 58992572 58992862 -42880307 + AluSx SINE Alu 4 297 -15 21 0 0 0 chr13 58993271 58993292 -42879877 + AT_rich Low_complexity Low_complexity 1 21 0 1251 181 172 33 chr13 58993700 58994003 -42879166 + MER2 DNA MER2_type 1 345 0 4089 152 43 15 chr13 58994203 58994954 -42878215 - L1PA16 LINE L1 -3 6163 5392 234 167 0 45 chr13 58995798 58995815 -42877354 + A-rich Low_complexity Low_complexity 3 19 -46 1914 149 7 3 chr13 58995815 58996117 -42877052 + AluSx SINE Alu 1 303 -9 234 167 0 45 chr13 58996117 58996165 -42877004 + A-rich Low_complexity Low_complexity 19 65 0 21 36 0 0 chr13 58996549 58996577 -42876592 + AT_rich Low_complexity Low_complexity 1 28 0 197 353 0 0 chr13 58996921 58996989 -42876180 - MER5B DNA MER1_type -103 75 8 455 264 108 23 chr13 58996989 58997247 -42875922 + L1ME4a LINE L1 5831 6110 -11 194 261 31 31 chr13 58998400 58998465 -42874704 - MIR SINE MIR -59 149 85 243 329 164 46 chr13 58999283 58999502 -42873667 + L2 LINE L2 3016 3260 -12 1612 177 0 32 chr13 58999561 58999843 -42873326 + AluJo SINE Alu 1 273 -39 320 257 14 0 chr13 59000588 59000658 -42872511 + MER20 DNA MER1_type 2 72 -147 469 306 56 20 chr13 59001399 59001595 -42871574 - MIR SINE MIR -57 205 3 334 302 140 30 chr13 59002418 59002653 -42870516 + MIR SINE MIR 2 262 0 600 264 207 11 chr13 59002856 59003117 -42870052 - MER46C DNA MER2_type -22 316 5 391 307 125 33 chr13 59004702 59005031 -42868138 + L1ME LINE L1 750 1108 -5097 1935 125 11 0 chr13 59005082 59005387 -42867782 + AluSx SINE Alu 1 308 0 249 238 77 83 chr13 59005405 59005573 -42867596 + L1ME LINE L1 1185 1351 -4864 320 275 53 16 chr13 59005720 59005909 -42867260 + L1ME LINE L1 1621 1816 -4580 511 289 25 88 chr13 59006309 59006867 -42866302 + L1ME LINE L1 2314 2836 -3379 428 127 16 0 chr13 59006889 59006952 -42866217 - AluSq/x SINE Alu -191 121 58 1565 83 0 20 chr13 59006952 59007156 -42866013 + AluSq SINE Alu 106 305 -8 1992 82 93 0 chr13 59007157 59007425 -42865744 + AluSp SINE Alu 2 294 -19 2171 120 0 7 chr13 59007492 59007800 -42865369 - AluSg SINE Alu -4 306 1 270 317 16 0 chr13 59007887 59008010 -42865159 + L1ME LINE L1 3613 3737 -2478 446 234 89 72 chr13 59008015 59008250 -42864919 + L1ME3A LINE L1 5928 6166 -4 187 333 14 0 chr13 59008768 59008837 -42864332 + L2 LINE L2 3244 3313 0 262 171 53 66 chr13 59010461 59010537 -42862632 + LTR33A LTR ERVL 447 521 -2 225 308 77 0 chr13 59012021 59012086 -42861083 + L2 LINE L2 3194 3263 -50 23 0 0 0 chr13 59012236 59012259 -42860910 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr13 59012912 59012948 -42860221 + AT_rich Low_complexity Low_complexity 1 36 0 326 329 76 12 chr13 59014423 59014925 -42858244 - L1M2 LINE L1 -3193 3022 2489 1091 246 202 54 chr13 59015129 59015699 -42857470 - MLT1E1 LTR MaLR 0 654 1 2309 104 7 0 chr13 59015842 59016150 -42857019 + AluSx SINE Alu 1 310 -2 343 238 63 70 chr13 59016551 59016765 -42856404 - L1M2 LINE L1 -936 1831 1531 1045 119 16 72 chr13 59016890 59017084 -42856085 + LTR1B LTR ERV1 1 183 -643 476 289 163 14 chr13 59017896 59018173 -42854996 - L2 LINE L2 -345 2969 2652 240 403 44 5 chr13 59018284 59018490 -42854679 + L2 LINE L2 2890 3103 -169 465 251 84 42 chr13 59018827 59019042 -42854127 + MER58A DNA MER1_type 1 224 0 251 281 85 60 chr13 59019042 59019277 -42853892 + L2 LINE L2 2866 3106 -166 24 0 0 0 chr13 59021771 59021795 -42851374 + AT_rich Low_complexity Low_complexity 1 24 0 217 280 40 90 chr13 59022731 59022831 -42850338 - L2 LINE L2 -52 3220 3126 313 245 75 11 chr13 59023251 59023345 -42849824 + MIR SINE MIR 125 224 -38 365 322 0 17 chr13 59023584 59023702 -42849467 + MER115 DNA AcHobo 40 155 -538 916 187 35 35 chr13 59023707 59023910 -42849259 + MER3 DNA MER1_type 1 203 -6 1220 305 130 21 chr13 59023940 59024615 -42848554 + L2 LINE L2 1912 2660 -654 297 350 22 22 chr13 59024654 59024791 -42848378 - L2 LINE L2 -235 3078 2942 335 264 0 33 chr13 59025008 59025099 -42848070 - L2 LINE L2 -811 2503 2416 1221 69 29 11 chr13 59025583 59025757 -42847412 + L1PA11 LINE L1 5998 6174 0 2474 74 0 0 chr13 59025819 59026131 -42847038 + AluSp SINE Alu 1 312 -1 2023 185 67 17 chr13 59026380 59026786 -42846383 + MSTB LTR MaLR 1 426 0 1808 173 0 3 chr13 59027118 59027413 -42845756 - AluSx SINE Alu -18 294 1 257 253 44 0 chr13 59028304 59028395 -42844774 + (TA)n Simple_repeat Simple_repeat 1 95 0 24 0 0 0 chr13 59028882 59028906 -42844263 + AT_rich Low_complexity Low_complexity 1 24 0 923 192 45 10 chr13 59029698 59030073 -42843096 + LTR54 LTR ERV1 8 482 -28 318 270 86 7 chr13 59031709 59031861 -42841308 + L1MC4a LINE L1 5736 5899 -1909 215 191 16 111 chr13 59032455 59032479 -42840690 - L2 LINE L2 0 3313 3288 2223 115 0 19 chr13 59032479 59032791 -42840378 - AluSx SINE Alu -6 306 1 215 191 16 111 chr13 59032791 59032829 -42840340 - L2 LINE L2 -25 3288 3257 21 0 0 0 chr13 59032834 59032855 -42840314 + AT_rich Low_complexity Low_complexity 1 21 0 658 273 147 33 chr13 59032867 59033317 -42839852 - LTR33A LTR ERVL 0 523 23 232 294 124 21 chr13 59033845 59034039 -42839130 - L1M4 LINE L1 -2060 4086 3873 1955 113 4 4 chr13 59034929 59035203 -42837966 - AluSx SINE Alu -11 301 28 538 354 62 41 chr13 59036453 59036939 -42836230 + L2 LINE L2 2244 2739 -575 351 316 38 57 chr13 59036988 59037251 -42835918 + L2 LINE L2 2807 3064 -208 2396 218 11 11 chr13 59038623 59039101 -42834068 + MLT2B2 LTR ERVL 30 507 -8 21 0 0 0 chr13 59039476 59039497 -42833672 + AT_rich Low_complexity Low_complexity 1 21 0 330 305 7 46 chr13 59041460 59041611 -42831558 - MIR SINE MIR -34 228 84 1487 162 57 37 chr13 59042825 59043122 -42830047 + MER1B DNA MER1_type 37 339 0 249 108 0 0 chr13 59043566 59043603 -42829566 + (T)n Simple_repeat Simple_repeat 1 37 0 502 262 161 70 chr13 59045286 59045915 -42827254 - L1MEd LINE L1 -4862 1257 572 283 242 95 21 chr13 59046690 59046785 -42826384 - MIR SINE MIR -137 125 24 601 243 58 65 chr13 59046828 59047181 -42825988 + L2 LINE L2 2720 3070 -243 2408 69 3 3 chr13 59047193 59047496 -42825673 + AluY SINE Alu 1 303 -8 24 0 0 0 chr13 59048508 59048532 -42824637 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 59049356 59049384 -42823785 + AT_rich Low_complexity Low_complexity 1 28 0 555 305 76 5 chr13 59049465 59049675 -42823494 + MIR SINE MIR 25 249 -13 184 289 0 53 chr13 59049709 59049785 -42823384 - L2 LINE L2 -2 3311 3240 * 391 300 95 48 chr13 59049766 59049976 -42823193 + MIR SINE MIR 30 249 -13 1158 163 0 0 chr13 59050218 59050408 -42822761 - AluJb SINE Alu -3 309 120 2423 83 0 0 chr13 59053831 59054133 -42819036 + AluSq SINE Alu 1 302 -11 2082 123 7 0 chr13 59056013 59056313 -42816856 + AluSx SINE Alu 1 302 -10 1909 134 14 3 chr13 59056870 59057153 -42816016 - AluSx SINE Alu -16 296 11 260 258 121 0 chr13 59057510 59057576 -42815593 - MLT1G LTR MaLR 0 590 517 686 289 80 0 chr13 59057591 59057830 -42815339 - MIR SINE MIR 0 262 5 253 243 68 27 chr13 59059789 59059863 -42813306 - MIR SINE MIR -1 261 185 289 219 191 9 chr13 59059866 59059971 -42813198 - L2 LINE L2 0 3313 3190 308 312 168 0 chr13 59060440 59060613 -42812556 + L2 LINE L2 3111 3312 -1 233 384 38 32 chr13 59060636 59060821 -42812348 - L2 LINE L2 -283 2989 2804 2191 142 91 8 chr13 59060824 59061219 -42811950 - MSTA LTR MaLR 0 428 1 254 297 127 8 chr13 59061240 59061358 -42811811 - L2 LINE L2 0 3313 3182 2484 84 0 0 chr13 59062611 59062922 -42810247 - AluY SINE Alu 0 311 1 355 313 113 5 chr13 59063596 59063791 -42809378 + MIR SINE MIR 3 218 -44 23 0 0 0 chr13 59063817 59063840 -42809329 + AT_rich Low_complexity Low_complexity 1 23 0 872 201 47 23 chr13 59065020 59065234 -42807935 - MER20 DNA MER1_type 0 219 1 1492 184 22 25 chr13 59065285 59065563 -42807606 + AluJo SINE Alu 3 279 -33 1175 48 24 0 chr13 59065565 59065604 -42807565 + (GGAAA)n Simple_repeat Simple_repeat 1 210 0 1175 48 24 0 chr13 59065604 59065771 -42807398 + (GGAAA)n Simple_repeat Simple_repeat 3 173 0 754 207 120 71 chr13 59066690 59066874 -42806295 + MER33 DNA MER1_type 1 207 -2378 2340 91 3 10 chr13 59066874 59067182 -42805987 - AluSx SINE Alu -6 306 1 754 207 120 71 chr13 59067182 59067306 -42805863 + MER33 DNA MER1_type 207 324 0 312 318 28 0 chr13 59067407 59067514 -42805655 + MER20B DNA MER1_type 58 167 -616 305 288 68 39 chr13 59067560 59067765 -42805404 + L2 LINE L2 2181 2391 -923 35 24 0 0 chr13 59068133 59068175 -42804994 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 59068829 59068850 -42804319 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr13 59069031 59069075 -42804094 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr13 59069578 59069601 -42803568 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1463 180 87 3 chr13 59069942 59070253 -42802916 + L1MCa LINE L1 23 359 -6067 5146 164 40 13 chr13 59070335 59071305 -42801864 + L1MC1 LINE L1 5338 6333 0 21 57 0 0 chr13 59071779 59071814 -42801355 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr13 59071924 59071960 -42801209 + (CA)n Simple_repeat Simple_repeat 2 37 0 180 0 0 0 chr13 59071991 59072011 -42801158 + (CA)n Simple_repeat Simple_repeat 2 21 0 1034 91 0 0 chr13 59073127 59073259 -42799910 + AluY SINE Alu 1 132 -179 797 149 0 37 chr13 59073339 59073473 -42799696 + FLAM_C SINE Alu 2 130 -3 627 257 118 8 chr13 59074545 59074782 -42798387 + L1ME LINE L1 5517 5779 -342 334 291 227 21 chr13 59076668 59076809 -42796360 + MIR3 SINE MIR 10 179 -29 208 405 36 0 chr13 59078243 59078354 -42794815 + L2 LINE L2 3119 3233 -39 623 224 0 0 chr13 59080387 59080503 -42792666 + FLAM_C SINE Alu 1 116 -17 190 111 0 44 chr13 59082356 59082401 -42790768 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1238 241 115 26 chr13 59082738 59083235 -42789934 + HAL1b LINE L1 99 639 -709 272 291 55 50 chr13 59083277 59083476 -42789693 + HAL1b LINE L1 469 668 -680 961 142 34 0 chr13 59083785 59083961 -42789208 + LTR54 LTR ERV1 329 510 0 271 346 39 15 chr13 59084627 59084757 -42788412 + L2 LINE L2 3181 3313 0 414 323 131 32 chr13 59084990 59085303 -42787866 + L2 LINE L2 2430 2773 -541 578 310 65 51 chr13 59085341 59085688 -42787481 + L1ME3A LINE L1 2322 2680 -3466 1760 147 38 14 chr13 59085688 59085980 -42787189 - AluJb SINE Alu -13 299 1 578 310 65 51 chr13 59085980 59086123 -42787046 + L1ME3A LINE L1 2680 2819 -3327 4904 180 35 54 chr13 59086233 59087987 -42785182 + L1MC1 LINE L1 4617 6328 -5 405 0 0 0 chr13 59087991 59088036 -42785133 + (CA)n Simple_repeat Simple_repeat 2 46 0 379 270 164 41 chr13 59088148 59088377 -42784792 + L1ME3A LINE L1 3133 3333 -2813 2183 145 13 20 chr13 59088377 59088770 -42784399 + MLT1B LTR MaLR 1 390 0 379 270 164 41 chr13 59088770 59089096 -42784073 + L1ME3A LINE L1 3333 3756 -2390 940 289 83 30 chr13 59089297 59089514 -42783655 + L1ME3A LINE L1 5318 5522 -648 1871 151 14 0 chr13 59089514 59089817 -42783352 + AluJb SINE Alu 1 307 0 940 289 83 30 chr13 59089817 59090199 -42782970 + L1ME3A LINE L1 5522 5951 -219 806 175 109 9 chr13 59090288 59090567 -42782602 + MLT1A1 LTR MaLR 1 363 -2 826 317 141 14 chr13 59092798 59093385 -42779784 + MLT2F LTR ERVL 2 663 0 896 281 187 20 chr13 59093452 59093960 -42779209 + MLT1G1 LTR MaLR 1 593 -2 1665 181 104 58 chr13 59095155 59095635 -42777534 + MLT1D LTR MaLR 1 502 -3 22 35 0 0 chr13 59095836 59095865 -42777304 + AT_rich Low_complexity Low_complexity 1 29 0 308 233 16 48 chr13 59096250 59096572 -42776597 + GA-rich Low_complexity Low_complexity 1 311 0 525 283 132 14 chr13 59097474 59097686 -42775483 - MIR SINE MIR -14 248 12 22 0 0 0 chr13 59097806 59097828 -42775341 + AT_rich Low_complexity Low_complexity 1 22 0 461 240 44 25 chr13 59098925 59099129 -42774040 + HAL1b LINE L1 276 483 -865 319 302 163 23 chr13 59099358 59099573 -42773596 + HAL1b LINE L1 996 1240 -108 264 347 6 59 chr13 59100138 59100308 -42772861 - MIR SINE MIR -42 220 60 227 54 27 0 chr13 59101084 59101121 -42772048 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 2009 127 3 3 chr13 59101586 59101870 -42771299 + AluSx SINE Alu 1 284 -28 525 216 116 60 chr13 59102342 59102541 -42770628 - MER63A DNA MER1_type 0 210 1 278 330 0 10 chr13 59102553 59102653 -42770516 - L1ME3A LINE L1 -51 6119 6021 32 0 0 0 chr13 59104280 59104312 -42768857 + AT_rich Low_complexity Low_complexity 1 32 0 251 305 96 57 chr13 59105322 59105499 -42767670 - MER91A DNA MER1_type 0 196 13 365 321 24 73 chr13 59105827 59105992 -42767177 + MIR SINE MIR 12 146 -62 1020 229 9 9 chr13 59106955 59107173 -42765996 + MLT1C LTR MaLR 250 467 0 536 281 48 24 chr13 59107312 59107479 -42765690 - MER5B DNA MER1_type -6 172 2 250 241 35 113 chr13 59107510 59107651 -42765518 - MER5B DNA MER1_type -20 158 29 529 280 129 0 chr13 59108823 59109009 -42764160 + MER63A DNA MER1_type 1 210 0 2428 67 0 3 chr13 59109632 59109929 -42763240 - AluY SINE Alu -15 296 1 2417 148 68 2 chr13 59111956 59112429 -42760740 - L1MA8 LINE L1 -3 6288 5785 204 208 38 0 chr13 59112782 59112835 -42760334 + (TA)n Simple_repeat Simple_repeat 1 55 0 288 0 0 0 chr13 59113247 59113279 -42759890 + (T)n Simple_repeat Simple_repeat 1 32 0 308 323 30 8 chr13 59113314 59113447 -42759722 - L1ME3A LINE L1 -3 6167 6032 1100 243 138 59 chr13 59113462 59113875 -42759294 - L1ME3A LINE L1 -181 5981 5515 1807 156 0 17 chr13 59113875 59114176 -42758993 + AluJo SINE Alu 1 296 -16 1100 243 138 59 chr13 59114176 59114435 -42758734 - L1ME3A LINE L1 -647 5515 5278 204 338 53 53 chr13 59114786 59114919 -42758250 - L2 LINE L2 -251 3021 2889 434 308 51 13 chr13 59115061 59115217 -42757952 - MIR SINE MIR -1 261 100 23 0 0 0 chr13 59115470 59115493 -42757676 + AT_rich Low_complexity Low_complexity 1 23 0 339 286 31 10 chr13 59115534 59115632 -42757537 + MIR SINE MIR 12 111 -151 753 178 31 0 chr13 59116559 59116688 -42756481 + FLAM_A SINE Alu 1 133 0 570 209 131 60 chr13 59118580 59118705 -42754464 - MER33 DNA MER1_type -2261 324 209 980 229 73 31 chr13 59118705 59119032 -42754137 + MER2 DNA MER2_type 4 344 0 570 209 131 60 chr13 59119032 59119189 -42753980 - MER33 DNA MER1_type -2376 209 22 1608 201 24 0 chr13 59120297 59120595 -42752574 + AluSx SINE Alu 3 307 -5 338 323 203 0 chr13 59121038 59121230 -42751939 + MIR SINE MIR 2 232 -30 380 243 75 19 chr13 59121837 59121944 -42751225 - MIR3 SINE MIR -28 180 68 707 275 108 23 chr13 59122356 59122698 -42750471 - L1ME3A LINE L1 -9 6161 5791 316 244 85 109 chr13 59122777 59122963 -42750206 - L1ME3A LINE L1 -1858 4288 4110 2144 54 30 24 chr13 59122963 59123260 -42749909 + AluY SINE Alu 1 299 -12 316 244 85 109 chr13 59123260 59123356 -42749813 - L1ME3A LINE L1 -2036 4110 4013 2328 83 0 22 chr13 59125548 59125861 -42747308 + AluY SINE Alu 1 306 -5 213 397 48 11 chr13 59126052 59126241 -42746928 + MIR SINE MIR 56 251 -11 1741 182 27 3 chr13 59128465 59128762 -42744407 - AluJb SINE Alu -6 306 3 180 337 11 21 chr13 59129056 59129151 -42744018 - MIR SINE MIR -2 260 167 21 36 0 0 chr13 59129932 59129960 -42743209 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 59130154 59130180 -42742989 + AT_rich Low_complexity Low_complexity 1 26 0 710 245 139 19 chr13 59130381 59130597 -42742572 - MIR SINE MIR -10 252 11 376 348 26 0 chr13 59133257 59133372 -42739797 - L2 LINE L2 -19 3253 3136 1795 158 0 10 chr13 59133768 59134059 -42739110 + AluJb SINE Alu 1 288 -24 512 175 31 0 chr13 59134134 59134231 -42738938 + MER5A DNA MER1_type 10 109 -80 23 0 0 0 chr13 59135222 59135245 -42737924 + AT_rich Low_complexity Low_complexity 1 23 0 2107 113 14 3 chr13 59135646 59135939 -42737230 - AluSx SINE Alu -16 296 1 552 264 123 27 chr13 59136735 59136955 -42736214 - MIR SINE MIR -21 241 1 1227 183 18 0 chr13 59137126 59137345 -42735824 + AluJb SINE Alu 86 308 -4 370 247 169 34 chr13 59137367 59137545 -42735624 + MIR SINE MIR 61 262 0 439 208 13 0 chr13 59138033 59138110 -42735059 - L2 LINE L2 -12 3301 3224 206 297 109 0 chr13 59138339 59138403 -42734766 + MIR SINE MIR 8 78 -184 2061 127 0 22 chr13 59138500 59138814 -42734355 + AluSx SINE Alu 1 307 -5 841 253 133 17 chr13 59139722 59140082 -42733087 - L1MC/D LINE L1 -1988 5820 5419 28 29 0 0 chr13 59140109 59140144 -42733025 + AT_rich Low_complexity Low_complexity 1 35 0 192 306 97 52 chr13 59140446 59140580 -42732589 - MIR SINE MIR 0 262 123 2309 73 16 28 chr13 59142913 59143230 -42729939 - AluSp SINE Alu 0 313 1 193 152 30 0 chr13 59144350 59144383 -42728786 + MIR SINE MIR 223 256 -6 261 245 0 0 chr13 59144512 59144565 -42728604 + L2 LINE L2 3219 3271 -1 979 235 0 10 chr13 59145446 59145650 -42727519 + AluJo SINE Alu 1 202 -110 2229 71 7 39 chr13 59145977 59146286 -42726883 + AluY SINE Alu 1 299 -12 291 93 0 0 chr13 59146300 59146343 -42726826 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 271 322 17 26 chr13 59146878 59146993 -42726176 - MLT1J LTR MaLR -257 254 141 206 305 103 30 chr13 59147589 59147722 -42725447 + MIR SINE MIR 33 175 -55 371 300 31 31 chr13 59147748 59147878 -42725291 + L2 LINE L2 3142 3271 -1 778 272 67 84 chr13 59148283 59149030 -42724139 - HAL1 LINE L1 -1305 1202 469 301 270 20 40 chr13 59149767 59149867 -42723302 + MER94 DNA DNA 37 134 0 2390 90 0 0 chr13 59150543 59150853 -42722316 + AluSg SINE Alu 1 310 0 1958 140 20 0 chr13 59152058 59152351 -42720818 - AluSx SINE Alu -13 299 1 322 330 92 6 chr13 59152501 59152674 -42720495 - L1MC/D LINE L1 -2019 5789 5602 22 80 0 0 chr13 59152688 59152738 -42720431 + AT_rich Low_complexity Low_complexity 1 50 0 348 298 109 46 chr13 59152765 59153317 -42719852 - L1MEd LINE L1 -4738 1572 938 2593 152 39 2 chr13 59153499 59153985 -42719184 - L1MA8 LINE L1 -6 6285 5782 2453 46 0 10 chr13 59154098 59154401 -42718768 - AluY SINE Alu -11 300 1 279 290 70 20 chr13 59154616 59154816 -42718353 - HAL1b LINE L1 -437 911 702 390 307 69 47 chr13 59155513 59155787 -42717382 - L1MC/D LINE L1 -1310 4836 4557 21 36 0 0 chr13 59155819 59155847 -42717322 + AT_rich Low_complexity Low_complexity 1 28 0 263 321 54 0 chr13 59155899 59156011 -42717158 + L2 LINE L2 3195 3312 -1 180 125 0 0 chr13 59157648 59157680 -42715489 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 189 293 12 12 chr13 59158418 59158500 -42714669 + L2 LINE L2 2156 2237 -1077 286 338 65 85 chr13 59158780 59159120 -42714049 - L2 LINE L2 -18 3254 2922 767 310 112 19 chr13 59159556 59160136 -42713033 + Tigger8 DNA MER2_type 3 636 -30 232 345 65 36 chr13 59160401 59160540 -42712629 - MIR3 SINE MIR -64 144 2 207 0 0 0 chr13 59161242 59161265 -42711904 + (TG)n Simple_repeat Simple_repeat 2 24 0 1727 130 45 4 chr13 59161278 59161547 -42711622 - AluSx SINE Alu -20 292 13 22 0 0 0 chr13 59163927 59163949 -42709220 + AT_rich Low_complexity Low_complexity 1 22 0 192 293 52 17 chr13 59164158 59164216 -42708953 - MIR SINE MIR -113 149 90 1709 232 112 67 chr13 59164558 59165282 -42707887 - L1MD3 LINE L1 -1 8041 7054 233 235 0 0 chr13 59165282 59165333 -42707836 - MLT1F1 LTR MaLR -442 125 75 1709 232 112 67 chr13 59165333 59165719 -42707450 - L1MD3 LINE L1 -988 7054 6687 6766 137 187 16 chr13 59166607 59167912 -42705257 + Tigger1 DNA MER2_type 890 2417 -1 22 35 0 0 chr13 59168013 59168042 -42705127 + AT_rich Low_complexity Low_complexity 1 29 0 938 139 101 13 chr13 59168344 59168502 -42704667 + MER1B DNA MER1_type 168 339 0 723 246 146 74 chr13 59168694 59168831 -42704338 - MLT1C LTR MaLR -3 464 338 2185 122 7 0 chr13 59168831 59169127 -42704042 + AluSx SINE Alu 3 300 -12 723 246 146 74 chr13 59169127 59169400 -42703769 - MLT1C LTR MaLR -129 338 28 24 32 0 0 chr13 59170312 59170343 -42702826 + AT_rich Low_complexity Low_complexity 1 31 0 2017 97 0 0 chr13 59170611 59170870 -42702299 - AluSx SINE Alu -15 297 39 329 259 98 21 chr13 59171598 59171741 -42701428 + Charlie8 DNA MER1_type 27 180 -2237 1026 204 41 66 chr13 59172690 59173009 -42700160 - MLT1A1 LTR MaLR 0 365 55 408 313 75 0 chr13 59173596 59173730 -42699439 - LTR67 LTR ERVL -21 536 393 1939 128 55 3 chr13 59173980 59174269 -42698900 - AluSx SINE Alu -7 305 2 751 261 84 35 chr13 59174574 59174835 -42698334 + LTR33 LTR ERVL 1 274 -247 21 36 0 0 chr13 59175527 59175555 -42697614 + AT_rich Low_complexity Low_complexity 1 28 0 245 125 18 0 chr13 59175837 59175893 -42697276 + (CA)n Simple_repeat Simple_repeat 1 57 0 309 133 0 48 chr13 59176387 59176470 -42696699 + (GAAA)n Simple_repeat Simple_repeat 2 80 0 895 222 113 24 chr13 59176821 59177114 -42696055 + MER5C DNA MER1_type 1 319 -5 234 233 0 0 chr13 59179750 59179793 -42693376 + polypyrimidine Low_complexity Low_complexity 2 44 0 275 268 57 16 chr13 59180090 59180213 -42692956 - HERVL LTR ERVL -5038 616 489 236 250 44 81 chr13 59180449 59180585 -42692584 - L1ME4a LINE L1 -17 6104 5974 1750 204 63 16 chr13 59183677 59184055 -42689114 - MSTD LTR MaLR 0 396 1 2171 115 7 7 chr13 59184138 59184442 -42688727 + AluSg1 SINE Alu 5 308 -1 669 215 8 0 chr13 59185434 59185555 -42687614 + FLAM_A SINE Alu 1 122 -11 285 51 0 0 chr13 59186263 59186302 -42686867 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 59186743 59186764 -42686405 + AT_rich Low_complexity Low_complexity 1 21 0 187 264 69 0 chr13 59189990 59190062 -42683107 + MIR SINE MIR 131 207 -55 22 0 0 0 chr13 59190816 59190838 -42682331 + AT_rich Low_complexity Low_complexity 1 22 0 2106 125 0 0 chr13 59191297 59191594 -42681575 - AluSx SINE Alu -15 297 1 310 260 21 21 chr13 59191609 59191705 -42681464 - MIR SINE MIR -93 115 20 255 261 22 36 chr13 59192658 59192796 -42680373 - L1M4 LINE L1 -1132 5014 4879 545 218 73 15 chr13 59193167 59193373 -42679796 - L1MCc LINE L1 -2386 4555 4338 1805 259 91 40 chr13 59193391 59194157 -42679012 - L1MCc LINE L1 -3539 3402 2676 2022 130 13 0 chr13 59194157 59194456 -42678713 - AluSx SINE Alu -9 303 1 1805 259 91 40 chr13 59194456 59195295 -42677874 - L1MCc LINE L1 -4265 2676 1328 1966 155 3 3 chr13 59195295 59195605 -42677564 - AluSx SINE Alu -2 310 1 1805 259 91 40 chr13 59195605 59195678 -42677491 - L1MCc LINE L1 -5613 1328 1260 666 267 62 24 chr13 59197051 59197261 -42675908 - MIR SINE MIR -44 218 1 346 217 13 76 chr13 59197675 59197832 -42675337 + MER103 DNA DNA 1 147 -19 3180 272 93 60 chr13 59197917 59198234 -42674935 + L2 LINE L2 1242 1547 -1766 2205 114 0 16 chr13 59198234 59198540 -42674629 - AluSg SINE Alu -9 301 1 3180 272 93 60 chr13 59198540 59199068 -42674101 + L2 LINE L2 1547 2056 -1257 225 0 0 0 chr13 59199068 59199093 -42674076 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3180 272 93 60 chr13 59199093 59199143 -42674026 + L2 LINE L2 2056 2103 -1210 2035 138 0 0 chr13 59199143 59199440 -42673729 - AluSx SINE Alu -15 297 1 3180 272 93 60 chr13 59199440 59200553 -42672616 + L2 LINE L2 2103 3313 0 3372 174 70 12 chr13 59200634 59201295 -42671874 - MER44D DNA MER2_type 0 605 35 1780 155 0 7 chr13 59201694 59202003 -42671166 + AluJb SINE Alu 1 307 0 1862 144 4 7 chr13 59202926 59203203 -42669966 + AluJb SINE Alu 1 276 -36 414 0 0 0 chr13 59203211 59203257 -42669912 + (TAA)n Simple_repeat Simple_repeat 3 48 0 2106 101 3 34 chr13 59204271 59204569 -42668600 + AluSc SINE Alu 1 289 -20 2008 148 0 3 chr13 59205812 59206122 -42667047 - AluSq SINE Alu -4 309 1 3605 82 43 19 chr13 59206878 59207414 -42665755 - L1MA1 LINE L1 -79 6223 5675 311 319 122 15 chr13 59207491 59207761 -42665408 - L1ME4a LINE L1 -193 5928 5630 1951 199 50 41 chr13 59209028 59209491 -42663678 + MLT1C LTR MaLR 1 467 0 1568 88 9 0 chr13 59210872 59211102 -42662067 + L1M1 LINE L1 5466 5709 -591 186 133 0 0 chr13 59213225 59213255 -42659914 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 228 163 0 0 chr13 59213254 59213297 -42659872 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 0 0 0 chr13 59213593 59213615 -42659554 + (GGGTG)n Simple_repeat Simple_repeat 1 22 0 189 121 0 0 chr13 59213711 59213744 -42659425 + (CGGGGG)n Simple_repeat Simple_repeat 3 35 0 496 322 12 55 chr13 59215047 59215260 -42657909 - MIR3 SINE MIR -2 206 1 273 98 0 0 chr13 59217009 59217050 -42656119 + (CA)n Simple_repeat Simple_repeat 2 42 0 211 277 46 30 chr13 59217216 59217382 -42655787 + MIR SINE MIR 10 198 -64 491 248 28 0 chr13 59217854 59217999 -42655170 + MER103 DNA DNA 4 152 -14 762 54 27 0 chr13 59218756 59218868 -42654301 + (TAGA)n Simple_repeat Simple_repeat 3 117 0 201 269 0 0 chr13 59219002 59219069 -42654100 + GA-rich Low_complexity Low_complexity 3 69 0 204 284 37 83 chr13 59219253 59219362 -42653807 - MIR3 SINE MIR -49 159 56 1873 148 28 7 chr13 59220374 59220665 -42652504 + AluSx SINE Alu 2 298 -14 420 20 0 0 chr13 59222433 59222482 -42650687 + (TG)n Simple_repeat Simple_repeat 1 49 0 508 292 40 49 chr13 59222530 59222756 -42650413 - MIR SINE MIR -11 251 28 * 1154 269 60 31 chr13 59222753 59223169 -42650000 + L2 LINE L2 837 1264 -2050 809 181 8 8 chr13 59224048 59224181 -42648988 + AluJo SINE Alu 2 134 -178 201 74 0 0 chr13 59224621 59224648 -42648521 + (CACCC)n Simple_repeat Simple_repeat 5 31 0 303 302 34 107 chr13 59224948 59225246 -42647923 - L1M2 LINE L1 -5790 1059 784 27 0 0 0 chr13 59225404 59225431 -42647738 + GC_rich Low_complexity Low_complexity 1 27 0 219 215 51 51 chr13 59225571 59225729 -42647440 + (CGGG)n Simple_repeat Simple_repeat 2 159 0 31 0 0 0 chr13 59225793 59225824 -42647345 + GC_rich Low_complexity Low_complexity 1 31 0 2572 57 0 0 chr13 59227891 59228191 -42644978 + AluY SINE Alu 1 300 -11 238 317 0 37 chr13 59228308 59228390 -42644779 + MIR SINE MIR 16 94 -114 279 0 0 0 chr13 59228705 59228736 -42644433 + (TG)n Simple_repeat Simple_repeat 2 32 0 408 20 0 0 chr13 59230172 59230221 -42642948 + (TG)n Simple_repeat Simple_repeat 2 50 0 326 365 36 18 chr13 59230300 59230467 -42642702 + MIR3 SINE MIR 35 204 -4 545 268 75 24 chr13 59230846 59231272 -42641897 - LTR16C LTR ERVL -13 478 1 212 267 100 0 chr13 59231917 59231977 -42641192 + L2 LINE L2 3239 3304 -9 213 94 0 0 chr13 59232173 59232205 -42640964 + (CA)n Simple_repeat Simple_repeat 2 33 0 1725 186 7 0 chr13 59232319 59232675 -42640494 + AluJo SINE Alu 1 358 0 1135 99 44 16 chr13 59233007 59233189 -42639980 + L1PB1 LINE L1 5965 6151 0 315 250 42 90 chr13 59233762 59233873 -42639296 + MIR SINE MIR 51 155 -107 2231 99 79 17 chr13 59233873 59234226 -42638943 + THE1C LTR MaLR 1 375 0 315 250 42 90 chr13 59234226 59234258 -42638911 + MIR SINE MIR 155 187 -75 206 304 0 29 chr13 59234743 59234812 -42638357 + L2 LINE L2 1888 1954 -1360 520 321 0 47 chr13 59234813 59235003 -42638166 + L2 LINE L2 2554 2734 -580 332 224 71 24 chr13 59235008 59235093 -42638076 + L2 LINE L2 3169 3257 -15 205 278 65 37 chr13 59235266 59235374 -42637795 - MIR SINE MIR -82 126 16 23 0 0 0 chr13 59236697 59236720 -42636449 + AT_rich Low_complexity Low_complexity 1 23 0 2183 91 7 7 chr13 59236720 59237005 -42636164 - AluSc SINE Alu -24 285 1 626 221 19 9 chr13 59237628 59237836 -42635333 + L1M4 LINE L1 4270 4480 -1662 840 124 62 12 chr13 59237836 59237997 -42635172 + L1MC2 LINE L1 6165 6333 -11 505 319 95 22 chr13 59238113 59238345 -42634824 + MIR SINE MIR 2 250 -12 22 0 0 0 chr13 59238676 59238698 -42634471 + AT_rich Low_complexity Low_complexity 1 22 0 252 59 0 0 chr13 59238769 59238803 -42634366 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 214 174 0 0 chr13 59239721 59239767 -42633402 + T-rich Low_complexity Low_complexity 1 46 0 40734 32 24 2 chr13 59239767 59245793 -42627376 - L1PA3 LINE L1 0 6155 1 2027 144 42 33 chr13 59246062 59246423 -42626746 - THE1B LTR MaLR 0 364 1 187 354 163 0 chr13 59246555 59246702 -42626467 - L2 LINE L2 -57 3215 3045 6010 58 4 1 chr13 59246766 59247563 -42625606 - L1PA8 LINE L1 -4 6168 5370 200 278 69 83 chr13 59247565 59247709 -42625460 - L2 LINE L2 -262 3051 2910 186 299 124 51 chr13 59248113 59248250 -42624919 + L2 LINE L2 2715 2861 -453 256 329 138 21 chr13 59248920 59249116 -42624053 - L2 LINE L2 -840 2474 2232 437 0 19 0 chr13 59249116 59249169 -42624000 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 256 329 138 21 chr13 59249169 59249261 -42623908 - L2 LINE L2 -1082 2232 2152 247 381 21 0 chr13 59249335 59249432 -42623737 - MIR3 SINE MIR -16 192 94 1736 176 58 15 chr13 59250469 59250798 -42622371 + MER2 DNA MER2_type 2 344 0 330 194 0 0 chr13 59250869 59250936 -42622233 + (TA)n Simple_repeat Simple_repeat 2 68 0 942 77 0 0 chr13 59251704 59251821 -42621348 + AluSc SINE Alu 180 296 -13 1465 299 34 19 chr13 59253545 59254168 -42619001 + ERVL LTR ERVL 1917 2548 -3216 793 275 96 21 chr13 59254167 59254501 -42618668 + ERVL LTR ERVL 3131 3489 -2275 * 224 280 0 0 chr13 59254510 59254560 -42618609 + (CA)n Simple_repeat Simple_repeat 1 50 0 254 321 69 8 chr13 59254570 59254701 -42618468 + ERVL LTR ERVL 3483 3621 -2033 192 125 0 0 chr13 59254722 59254754 -42618415 + (TAGA)n Simple_repeat Simple_repeat 4 35 0 350 303 101 28 chr13 59254973 59255191 -42617978 + ERVL LTR ERVL 3947 4180 -1584 1231 215 126 72 chr13 59255198 59255384 -42617785 + MLT1D LTR MaLR 1 176 -329 3294 127 39 0 chr13 59255384 59255929 -42617240 + L1MA4 LINE L1 5716 6281 -19 1231 215 126 72 chr13 59255929 59256211 -42616958 + MLT1D LTR MaLR 176 494 -11 298 328 47 32 chr13 59256409 59256662 -42616507 + ERVL LTR ERVL 4419 4675 -1089 601 301 34 55 chr13 59256828 59257267 -42615902 + ERVL LTR ERVL 4882 5311 -453 1041 219 67 158 chr13 59258165 59258926 -42614243 + MER21B LTR ERV1 23 714 -149 245 271 19 93 chr13 59258928 59259001 -42614168 + LTR67 LTR ERVL 442 506 -51 2305 120 21 12 chr13 59259001 59259334 -42613835 + MER1B DNA MER1_type 1 336 -1 245 271 19 93 chr13 59259334 59259367 -42613802 + LTR67 LTR ERVL 506 540 -17 575 275 79 57 chr13 59259716 59260120 -42613049 - MLT1J LTR MaLR -2 509 97 594 310 20 5 chr13 59262232 59262435 -42610734 - L3b LINE CR1 -88 1495 1290 435 293 16 56 chr13 59262597 59262846 -42610323 - L1ME LINE L1 -428 5693 5455 589 316 42 9 chr13 59263628 59263843 -42609326 - L2 LINE L2 -405 2909 2688 1283 13 7 0 chr13 59264231 59264384 -42608785 + (TTTC)n Simple_repeat Simple_repeat 3 156 0 2369 64 0 19 chr13 59264408 59264720 -42608449 - L1PA8 LINE L1 -1 6171 5866 688 162 0 9 chr13 59264720 59264831 -42608338 - AluJo SINE Alu -167 145 36 242 310 46 35 chr13 59265899 59265986 -42607183 - L2 LINE L2 -18 3295 3208 286 236 79 0 chr13 59268621 59268710 -42604459 - MIR SINE MIR -77 185 90 246 62 0 0 chr13 59269263 59269295 -42603874 + (T)n Simple_repeat Simple_repeat 1 32 0 27 29 0 0 chr13 59270116 59270150 -42603019 + AT_rich Low_complexity Low_complexity 1 34 0 32 26 0 0 chr13 59270175 59270214 -42602955 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr13 59270230 59270251 -42602918 + AT_rich Low_complexity Low_complexity 1 21 0 37 39 0 0 chr13 59270416 59270467 -42602702 + AT_rich Low_complexity Low_complexity 1 51 0 350 359 48 6 chr13 59271805 59271972 -42601197 + MIR3 SINE MIR 30 203 -5 264 266 90 24 chr13 59272625 59272789 -42600380 + MIR SINE MIR 14 189 -62 2235 111 7 0 chr13 59272904 59273202 -42599967 - AluY SINE Alu -11 300 1 317 282 94 8 chr13 59274863 59275012 -42598157 + MIR SINE MIR 25 185 -59 261 241 0 17 chr13 59275366 59275424 -42597745 + CT-rich Low_complexity Low_complexity 5 61 0 414 0 0 0 chr13 59276565 59276611 -42596558 + (GA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr13 59278288 59278317 -42594852 + AT_rich Low_complexity Low_complexity 1 29 0 835 71 0 18 chr13 59278317 59278430 -42594739 - HY1 scRNA scRNA -1 111 1 478 268 79 53 chr13 59281435 59281663 -42591506 + MIR SINE MIR 6 239 -23 916 298 132 21 chr13 59281719 59282194 -42590975 + L2 LINE L2 2781 3307 -6 231 158 26 0 chr13 59282897 59282935 -42590234 - Alu SINE Alu -261 39 1 196 349 99 12 chr13 59282991 59283163 -42590006 + L2 LINE L2 2490 2676 -638 443 342 48 9 chr13 59283246 59283477 -42589692 + MIR SINE MIR 7 246 -16 1631 173 14 30 chr13 59284092 59284387 -42588782 - AluSx SINE Alu -22 290 1 433 285 29 62 chr13 59284490 59284653 -42588516 - MIR SINE MIR -63 145 4 180 0 0 0 chr13 59285334 59285354 -42587815 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 417 261 9 0 chr13 59285577 59285688 -42587481 + MER103 DNA DNA 2 113 -53 576 202 0 0 chr13 59286701 59286800 -42586369 - MER3 DNA MER1_type -105 104 6 623 332 32 16 chr13 59287311 59287621 -42585548 - L2 LINE L2 -297 3016 2702 1092 212 10 52 chr13 59288645 59288933 -42584236 - MLT1B LTR MaLR -114 276 1 233 190 52 0 chr13 59289253 59289311 -42583858 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 1604 223 65 44 chr13 59289933 59290300 -42582869 - THE1C LTR MaLR 0 375 1 544 104 0 0 chr13 59290542 59290619 -42582550 + MADE1 DNA Mariner 4 80 0 22 70 0 0 chr13 59290841 59290884 -42582285 + AT_rich Low_complexity Low_complexity 1 43 0 1467 207 92 33 chr13 59291283 59291674 -42581495 + MLT2D LTR ERVL 1 414 0 1006 112 62 0 chr13 59292474 59292653 -42580516 + L1PB3 LINE L1 5286 5475 -679 5525 117 28 2 chr13 59292657 59294249 -42578920 - L1PA13 LINE L1 0 6163 4537 2907 174 9 2 chr13 59294334 59294875 -42578294 - L1PA13 LINE L1 -1583 4563 4019 4389 111 14 10 chr13 59294875 59295566 -42577603 + L1PB3 LINE L1 5461 6154 0 494 106 0 35 chr13 59295566 59295650 -42577519 + L1MB8 LINE L1 6096 6177 -1 1117 181 0 11 chr13 59295716 59295904 -42577265 - AluJo SINE Alu -38 274 89 207 0 0 0 chr13 59296725 59296748 -42576421 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 287 322 44 0 chr13 59297473 59297563 -42575606 - MIR SINE MIR -11 251 158 188 266 51 51 chr13 59298522 59298601 -42574568 + L2 LINE L2 2689 2767 -547 284 282 214 0 chr13 59299309 59299426 -42573743 - L1ME3A LINE L1 -10 6160 6019 664 298 21 11 chr13 59299438 59299717 -42573452 - L1ME3A LINE L1 -577 5587 5306 993 257 134 47 chr13 59299766 59300588 -42572581 - L1ME3A LINE L1 -919 5227 4335 261 95 48 63 chr13 59300592 59300655 -42572514 - MLT2B1 LTR ERVL -7 513 452 349 211 0 0 chr13 59300801 59300872 -42572297 - MLT2B1 LTR ERVL -449 71 1 260 226 0 0 chr13 59300901 59300954 -42572215 - L1ME3A LINE L1 -1833 4313 4261 710 255 15 0 chr13 59301707 59301903 -42571266 + L1ME1 LINE L1 5663 5861 -305 2060 142 18 21 chr13 59302022 59302360 -42570809 + MER1B DNA MER1_type 1 337 0 1045 221 35 9 chr13 59302606 59302832 -42570337 - MIR SINE MIR -2 260 29 291 93 0 0 chr13 59304428 59304471 -42568698 + (TG)n Simple_repeat Simple_repeat 2 44 0 1013 292 11 4 chr13 59305112 59305478 -42567691 - MLT1I LTR MaLR -2 407 4 188 313 75 0 chr13 59305591 59305671 -42567498 + L2 LINE L2 1764 1849 -1465 243 297 40 30 chr13 59305681 59305782 -42567387 + L2 LINE L2 2861 2962 -352 437 328 61 26 chr13 59306995 59307224 -42565945 + MIR SINE MIR 20 256 -6 1625 112 0 9 chr13 59308233 59308465 -42564704 - MER30 DNA MER1_type 0 230 1 398 286 17 8 chr13 59308809 59308928 -42564241 + MIR SINE MIR 126 245 -17 610 188 11 19 chr13 59310306 59310441 -42562728 - MSTA LTR MaLR -310 118 1 594 250 37 48 chr13 59310451 59310723 -42562446 + L1MC5 LINE L1 6976 7244 -717 657 255 57 87 chr13 59310839 59311491 -42561678 + L1MC5 LINE L1 7296 7927 -34 5432 147 2 0 chr13 59311605 59312463 -42560706 - L1PA16 LINE L1 -1 6165 5306 2797 214 8 0 chr13 59312463 59313079 -42560090 + L1PA16 LINE L1 4700 5320 -826 14168 109 13 10 chr13 59314324 59317273 -42555896 - L1PA8 LINE L1 -6 6166 3205 190 273 45 68 chr13 59317681 59317813 -42555356 - MIR SINE MIR -13 249 121 415 275 58 8 chr13 59318316 59318436 -42554733 - MIR SINE MIR -70 192 67 2192 116 3 0 chr13 59318833 59319136 -42554033 - AluSg1 SINE Alu -5 304 1 209 231 58 0 chr13 59319147 59319199 -42553970 - MIR SINE MIR -44 218 164 470 137 137 0 chr13 59319768 59319863 -42553306 - L2 LINE L2 -4 3309 3202 235 360 72 59 chr13 59319860 59320013 -42553156 - L2 LINE L2 -292 3021 2867 * 9741 155 27 49 chr13 59320119 59322572 -42550597 - L1P3 LINE L1 -3973 2488 10 9182 216 41 15 chr13 59323305 59325820 -42547349 + L1M2 LINE L1 710 3376 -3472 2620 52 0 0 chr13 59325820 59326126 -42547043 - AluY SINE Alu -5 306 1 9182 216 41 15 chr13 59326126 59327729 -42545440 + L1M2 LINE L1 3376 4936 -1912 189 264 57 0 chr13 59329259 59329312 -42543857 + L2 LINE L2 3248 3303 -10 228 257 71 0 chr13 59329870 59329940 -42543229 + MLT1J LTR MaLR 1 75 -436 388 303 23 15 chr13 59330185 59330317 -42542852 + MLT1J LTR MaLR 300 432 -79 488 330 109 39 chr13 59330588 59330900 -42542269 + L2 LINE L2 2564 2897 -417 189 281 31 0 chr13 59330900 59330964 -42542205 + MIR SINE MIR 191 256 -6 188 345 72 29 chr13 59330961 59331100 -42542069 + L2 LINE L2 2882 3026 -246 * 24 32 0 0 chr13 59331405 59331436 -42541733 + AT_rich Low_complexity Low_complexity 1 31 0 356 399 76 27 chr13 59331534 59332314 -42540855 - L2 LINE L2 -2223 1091 274 847 258 96 75 chr13 59332974 59333517 -42539652 + LTR67 LTR ERVL 4 557 0 554 65 9 4 chr13 59333787 59334003 -42539166 + AluY SINE Alu 1 307 -2 729 310 33 40 chr13 59334559 59335008 -42538161 - MLT1J1 LTR MaLR 0 446 1 577 273 84 17 chr13 59335551 59335789 -42537380 + MLT1L LTR MaLR 139 392 -223 740 175 0 8 chr13 59337880 59338006 -42535163 - FLAM_C SINE Alu -18 125 1 1110 284 53 24 chr13 59338884 59339300 -42533869 - L2 LINE L2 -2050 1264 837 537 292 40 49 chr13 59339297 59339523 -42533646 + MIR SINE MIR 28 251 -11 * 420 20 0 0 chr13 59339571 59339620 -42533549 + (CA)n Simple_repeat Simple_repeat 1 49 0 4779 176 89 5 chr13 59340138 59340917 -42532252 - L1MC3 LINE L1 -69 7716 6839 189 0 0 0 chr13 59340917 59340938 -42532231 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4779 176 89 5 chr13 59340938 59341126 -42532043 - L1MC3 LINE L1 -946 6839 6668 474 293 97 56 chr13 59341128 59341472 -42531697 - L1MC4 LINE L1 -886 7007 6561 261 233 11 22 chr13 59341536 59341626 -42531543 + (TA)n Simple_repeat Simple_repeat 1 89 0 786 242 22 35 chr13 59342076 59342307 -42530862 - L1MC4 LINE L1 -1911 5897 5670 225 310 62 26 chr13 59342325 59342438 -42530731 + MIR SINE MIR 124 240 -22 207 0 0 0 chr13 59342532 59342555 -42530614 + (TG)n Simple_repeat Simple_repeat 2 24 0 190 416 0 0 chr13 59342823 59342912 -42530257 - L2 LINE L2 -541 2773 2685 486 347 125 30 chr13 59343000 59343348 -42529821 + L2 LINE L2 1989 2303 -1011 186 43 0 0 chr13 59343348 59343371 -42529798 + (TCTCC)n Simple_repeat Simple_repeat 3 25 0 486 347 125 30 chr13 59343371 59343677 -42529492 + L2 LINE L2 2303 2705 -609 459 359 24 5 chr13 59344279 59344485 -42528684 - MIR SINE MIR -5 257 48 1335 206 54 90 chr13 59344607 59344926 -42528243 + MER39 LTR ERV1 1 330 -377 1920 157 0 0 chr13 59344926 59345219 -42527950 + AluSx SINE Alu 1 293 -19 1335 206 54 90 chr13 59345219 59345407 -42527762 + MER39 LTR ERV1 330 707 0 194 314 0 20 chr13 59345691 59345742 -42527427 - L2 LINE L2 -3 3269 3220 1559 166 36 50 chr13 59346613 59346914 -42526255 + AluJo SINE Alu 15 311 -1 588 246 72 7 chr13 59346953 59347091 -42526078 - L2 LINE L2 0 3313 3167 194 333 0 0 chr13 59349191 59349251 -42523918 + L2 LINE L2 1893 1952 -1362 565 272 56 48 chr13 59349263 59349590 -42523579 - MLT1J2 LTR MaLR -25 425 56 586 335 31 38 chr13 59349828 59350121 -42523048 + L2 LINE L2 2196 2486 -828 2659 156 51 74 chr13 59350291 59350912 -42522257 + MLT2B3 LTR ERVL 1 515 0 1677 238 46 28 chr13 59351022 59351454 -42521715 - MLT2B1 LTR ERVL -71 449 10 234 324 50 0 chr13 59351463 59351645 -42521524 - L1ME LINE L1 -253 5868 5678 575 308 73 75 chr13 59351709 59352218 -42520951 + MLT1K LTR MaLR 67 574 -14 23 86 0 0 chr13 59352265 59352323 -42520846 + AT_rich Low_complexity Low_complexity 1 58 0 423 313 0 0 chr13 59352758 59352873 -42520296 + MER94 DNA DNA 16 130 -4 * 653 286 60 20 chr13 59352864 59353193 -42519976 - MLT1J1 LTR MaLR -50 396 11 540 321 60 14 chr13 59353484 59353702 -42519467 + MIR SINE MIR 20 247 -15 21 0 0 0 chr13 59354021 59354042 -42519127 + AT_rich Low_complexity Low_complexity 1 21 0 1599 161 14 25 chr13 59354569 59354854 -42518315 - AluJo SINE Alu -30 282 1 234 0 0 0 chr13 59356840 59356866 -42516303 + (TG)n Simple_repeat Simple_repeat 2 27 0 2221 131 0 0 chr13 59357614 59357920 -42515249 - AluSx SINE Alu -6 306 1 247 187 83 77 chr13 59358754 59358781 -42514388 + L1M4c LINE L1 2397 2422 -3960 2276 65 55 3 chr13 59358781 59359072 -42514097 + AluY SINE Alu 1 306 -5 247 187 83 77 chr13 59359072 59359164 -42514005 + L1M4c LINE L1 2422 2517 -3865 188 279 13 76 chr13 59359699 59359778 -42513391 + L2 LINE L2 2517 2590 -724 1400 135 45 0 chr13 59360184 59360406 -42512763 - Tigger3(Golem) DNA MER2_type -2 3027 2796 4946 103 32 13 chr13 59360417 59361204 -42511965 + LOR1-int LTR ERV1 4241 5042 -3078 389 20 0 20 chr13 59361242 59361293 -42511876 + (GAAA)n Simple_repeat Simple_repeat 2 51 0 14860 191 26 8 chr13 59361346 59362179 -42510990 - L1PB1 LINE L1 -1 6866 6049 198 0 0 0 chr13 59362179 59362201 -42510968 + (TTA)n Simple_repeat Simple_repeat 2 23 0 14860 191 26 8 chr13 59362201 59364193 -42508976 - L1PB1 LINE L1 -818 6049 4093 2287 110 25 25 chr13 59364193 59364557 -42508612 - THE1B LTR MaLR 0 364 1 11069 98 35 1 chr13 59364557 59366084 -42507085 - THE1B-int LTR MaLR 0 1580 1 2011 133 75 20 chr13 59366084 59366429 -42506740 - THE1B LTR MaLR 0 364 1 14860 191 26 8 chr13 59366429 59369038 -42504131 - L1PB1 LINE L1 -2773 4094 1312 2455 128 124 21 chr13 59369041 59369516 -42503653 - L1PB1 LINE L1 -5704 1159 636 1072 172 5 0 chr13 59369518 59369716 -42503453 - L1PB1 LINE L1 -6663 200 2 507 181 79 71 chr13 59369729 59369856 -42503313 - Tigger3(Golem) DNA MER2_type -451 2578 25 269 183 17 0 chr13 59369859 59369919 -42503250 + MER7A DNA MER2_type 46 104 -242 940 276 45 16 chr13 59370067 59370491 -42502678 - L1MCa LINE L1 -4114 3008 2573 3150 102 29 8 chr13 59370557 59371039 -42502130 - L1PA10 LINE L1 0 6168 5677 4249 236 112 49 chr13 59371043 59372648 -42500521 - L1MC4a LINE L1 -7 7801 6096 2296 104 44 16 chr13 59373187 59373552 -42499617 - THE1C LTR MaLR 0 375 1 292 270 81 16 chr13 59373570 59373755 -42499414 - L1MC4a LINE L1 -1687 6121 5925 2293 171 37 14 chr13 59373764 59374405 -42498764 - L1MB8 LINE L1 -5 6173 5458 1394 262 75 36 chr13 59374398 59374986 -42498183 - L1MC4a LINE L1 -1862 5946 5336 * 1050 256 51 6 chr13 59374990 59375345 -42497824 - L1MCa LINE L1 -4536 2586 2028 357 323 100 32 chr13 59375373 59375714 -42497455 - L1MCa LINE L1 -6013 410 47 276 256 125 62 chr13 59377406 59377586 -42495583 - MIR SINE MIR -66 142 3 180 0 0 0 chr13 59377693 59377713 -42495456 + (T)n Simple_repeat Simple_repeat 1 20 0 1334 159 99 46 chr13 59377962 59378245 -42494924 - AluJo SINE Alu -14 298 1 217 266 128 37 chr13 59378250 59378359 -42494810 - L2 LINE L2 0 3313 3195 5053 209 60 32 chr13 59378725 59380096 -42493073 + Charlie1a DNA MER1_type 5 1414 -41 1013 271 13 17 chr13 59380097 59380396 -42492773 - L1MD3 LINE L1 -12 7983 7686 296 217 17 0 chr13 59380396 59380456 -42492713 + Charlie1a DNA MER1_type 1395 1455 0 200 170 38 0 chr13 59380871 59380924 -42492245 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 25 31 0 0 chr13 59381147 59381179 -42491990 + AT_rich Low_complexity Low_complexity 1 32 0 2420 108 8 8 chr13 59381816 59382169 -42491000 - THE1A LTR MaLR 0 355 3 11427 92 12 4 chr13 59382171 59383738 -42489431 - THE1A-int LTR MaLR 0 1580 1 2390 104 8 11 chr13 59383738 59384094 -42489075 - THE1A LTR MaLR 0 355 1 370 357 70 12 chr13 59384305 59384476 -42488693 - L2 LINE L2 -1 3271 3091 574 133 9 0 chr13 59385995 59386100 -42487069 - L1MA8 LINE L1 -3 6288 6183 21 57 0 0 chr13 59386402 59386437 -42486732 + AT_rich Low_complexity Low_complexity 1 35 0 2005 141 141 8 chr13 59388279 59388655 -42484514 + MSTA LTR MaLR 1 426 -2 3677 142 12 28 chr13 59389645 59390298 -42482871 + MER73 LTR ERVL 2 644 0 203 0 37 0 chr13 59391404 59391431 -42481738 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 262 297 42 59 chr13 59391872 59391990 -42481179 - L3 LINE CR1 -21 1556 1441 2502 114 11 3 chr13 59392040 59392401 -42480768 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr13 59393016 59393042 -42480127 + AT_rich Low_complexity Low_complexity 1 26 0 6489 192 176 24 chr13 59393631 59395155 -42478014 + MER52A LTR ERV1 1 1755 0 436 245 39 0 chr13 59395815 59395917 -42477252 - MIR SINE MIR -29 233 128 910 245 24 9 chr13 59398158 59398370 -42474799 + MER58A DNA MER1_type 8 222 -2 412 119 0 24 chr13 59398865 59398949 -42474220 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1008 86 0 0 chr13 59399605 59399745 -42473424 + (TTCC)n Simple_repeat Simple_repeat 1 140 0 1792 142 15 0 chr13 59399745 59400019 -42473150 - AluJb SINE Alu -34 278 1 23 0 0 0 chr13 59400525 59400548 -42472621 + AT_rich Low_complexity Low_complexity 1 23 0 240 161 0 0 chr13 59400989 59401051 -42472118 + GA-rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr13 59401609 59401633 -42471536 + AT_rich Low_complexity Low_complexity 1 24 0 299 173 37 37 chr13 59402409 59402490 -42470679 - MIR SINE MIR -71 191 111 182 333 20 0 chr13 59402933 59402984 -42470185 - L2 LINE L2 -22 3250 3199 203 286 107 12 chr13 59403147 59403231 -42469938 - L2 LINE L2 -236 3036 2945 231 365 185 5 chr13 59403254 59403476 -42469693 - L2 LINE L2 -496 2818 2557 2655 116 8 106 chr13 59404603 59405121 -42468048 - MLT1C LTR MaLR 0 467 1 1028 162 0 6 chr13 59405361 59405528 -42467641 - FRAM SINE Alu -14 162 1 280 282 104 79 chr13 59405679 59406286 -42466883 - L1ME4a LINE L1 -182 5939 5318 812 186 0 55 chr13 59406426 59406609 -42466560 - pTR5 LTR ERV1 -1524 914 742 42825 31 22 3 chr13 59406652 59412680 -42460489 + L1HS LINE L1 7 6155 0 25 31 0 0 chr13 59412794 59412826 -42460343 + AT_rich Low_complexity Low_complexity 1 32 0 1309 257 36 17 chr13 59413368 59413845 -42459324 + MER97a DNA MER1_type? 16 545 -508 551 253 29 70 chr13 59414271 59414512 -42458657 + MER97c DNA MER1_type? 855 1085 -5 444 272 83 67 chr13 59415124 59415304 -42457865 - MIR3 SINE MIR -5 203 21 194 239 136 0 chr13 59415355 59415443 -42457726 + MIR SINE MIR 154 253 -9 22 0 0 0 chr13 59415719 59415741 -42457428 + AT_rich Low_complexity Low_complexity 1 22 0 415 326 94 0 chr13 59417646 59417827 -42455342 - MIR SINE MIR -30 232 35 683 285 64 61 chr13 59418224 59418599 -42454570 - MLT1J LTR MaLR -134 377 2 1821 257 59 4 chr13 59419776 59420235 -42452934 - LTR40a LTR ERVL -35 484 1 24 0 0 0 chr13 59420307 59420331 -42452838 + AT_rich Low_complexity Low_complexity 1 24 0 743 257 38 24 chr13 59420379 59420673 -42452496 - L1MC/D LINE L1 -351 5770 5522 4240 205 33 34 chr13 59421207 59422790 -42450379 - L1MA9 LINE L1 -34 6278 4682 369 75 0 0 chr13 59422900 59422953 -42450216 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1455 117 36 0 chr13 59423299 59423521 -42449648 - MER30 DNA MER1_type 0 230 1 302 389 79 0 chr13 59423649 59423788 -42449381 - MIR3 SINE MIR -29 179 30 1405 147 9 110 chr13 59426579 59426781 -42446388 - L1PB4 LINE L1 -1 6155 5997 2093 128 3 0 chr13 59426781 59427070 -42446099 - AluSx SINE Alu -22 290 1 1405 147 9 110 chr13 59427070 59427193 -42445976 - L1PB4 LINE L1 -159 5997 5863 658 230 86 0 chr13 59427785 59427924 -42445245 - FRAM SINE Alu -25 151 1 228 250 0 33 chr13 59428534 59428594 -42444575 + CT-rich Low_complexity Low_complexity 3 60 0 2969 215 77 8 chr13 59428613 59429370 -42443799 - L1MC4a LINE L1 0 7808 7000 2282 114 38 19 chr13 59429462 59429830 -42443339 - THE1C LTR MaLR 0 375 1 192 367 137 7 chr13 59432136 59432275 -42440894 + L2 LINE L2 3101 3257 -15 4396 241 100 19 chr13 59433073 59433310 -42439859 + L1M4 LINE L1 16 232 -6310 1753 135 106 12 chr13 59433310 59433651 -42439518 - THE1C LTR MaLR 0 375 3 4396 241 100 19 chr13 59433651 59434739 -42438430 + L1M4 LINE L1 232 1456 -5086 2261 114 0 0 chr13 59434739 59435045 -42438124 + AluSc SINE Alu 1 306 -3 4396 241 100 19 chr13 59435045 59435077 -42438092 + L1M4 LINE L1 1456 1484 -5058 * 5288 207 42 24 chr13 59435076 59436398 -42436771 + L1MC2 LINE L1 3995 5367 -977 1979 101 0 0 chr13 59436398 59436674 -42436495 + L1PA8A LINE L1 5854 6129 -2 5288 207 42 24 chr13 59436674 59437663 -42435506 + L1MC2 LINE L1 5367 6336 -8 623 192 47 17 chr13 59437665 59437837 -42435332 + L1M4 LINE L1 1468 1644 -4898 3731 199 35 12 chr13 59437854 59438662 -42434507 + L1MB8 LINE L1 5347 6172 -6 280 252 19 0 chr13 59438767 59438874 -42434295 + CT-rich Low_complexity Low_complexity 6 114 0 23 78 0 0 chr13 59439040 59439091 -42434078 + AT_rich Low_complexity Low_complexity 1 51 0 1940 135 3 10 chr13 59439288 59439591 -42433578 + AluSg SINE Alu 1 301 -9 187 294 0 73 chr13 59439677 59439745 -42433424 - L3 LINE CR1 -80 1497 1435 561 268 134 5 chr13 59439907 59440101 -42433068 + MIR SINE MIR 43 261 -1 439 242 88 57 chr13 59440590 59440784 -42432385 + MIR SINE MIR 44 243 -19 2201 92 7 0 chr13 59441723 59442031 -42431138 + AluSx SINE Alu 1 310 0 2261 153 35 24 chr13 59442422 59442846 -42430323 + Tigger2a DNA MER2_type 5 433 -1 750 265 45 113 chr13 59443349 59443931 -42429238 + MER34 LTR ERV1 1 542 0 1295 209 8 0 chr13 59444232 59444481 -42428688 - L1MCa LINE L1 -6150 276 26 807 251 17 0 chr13 59446083 59446258 -42426911 + MER5A DNA MER1_type 1 178 -11 1025 144 65 5 chr13 59446275 59446476 -42426693 - MER20 DNA MER1_type -3 216 4 547 266 169 0 chr13 59446571 59446725 -42426444 - MER5A DNA MER1_type 0 189 10 771 282 56 58 chr13 59447837 59448284 -42424885 + MLT1J1 LTR MaLR 1 446 0 185 283 224 32 chr13 59448908 59449127 -42424042 - L2 LINE L2 -1291 2023 1763 270 206 0 0 chr13 59449994 59450057 -42423112 + (CAATT)n Simple_repeat Simple_repeat 1 63 0 1873 210 43 30 chr13 59450552 59451013 -42422156 - MLT1C LTR MaLR 0 467 1 573 312 66 35 chr13 59451288 59451738 -42421431 - MLT1J LTR MaLR -26 424 1 292 257 147 0 chr13 59452358 59452467 -42420702 + L1ME3A LINE L1 4015 4139 -2007 2139 266 91 22 chr13 59452615 59453733 -42419436 + L1ME3A LINE L1 4192 5386 -760 1954 241 36 79 chr13 59453742 59454621 -42418548 + L1ME3A LINE L1 5358 6170 0 1356 148 151 48 chr13 59455174 59455485 -42417684 - MER2 DNA MER2_type -1 343 1 2741 272 56 15 chr13 59455822 59456576 -42416593 - MER21B LTR ERV1 -60 803 19 445 211 0 0 chr13 59456600 59456676 -42416493 - MER21B LTR ERV1 -776 87 12 23 0 0 0 chr13 59457104 59457127 -42416042 + AT_rich Low_complexity Low_complexity 1 23 0 250 327 109 10 chr13 59458431 59458532 -42414637 - MIR3 SINE MIR -83 125 15 2106 213 83 12 chr13 59458798 59458828 -42414341 - MLT2B1 LTR ERVL -3 517 491 315 49 0 0 chr13 59458828 59458869 -42414300 + (TG)n Simple_repeat Simple_repeat 2 42 0 2106 213 83 12 chr13 59458869 59459321 -42413848 - MLT2B1 LTR ERVL -29 491 1 2025 139 60 31 chr13 59459353 59459705 -42413464 - THE1B LTR MaLR -2 362 1 4582 177 86 12 chr13 59459979 59460905 -42412264 + Tigger6a DNA MER2_type 1 1009 -588 180 0 0 0 chr13 59460905 59460925 -42412244 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4582 177 86 12 chr13 59460925 59461005 -42412164 + Tigger6a DNA MER2_type 1009 1082 -1 294 372 73 11 chr13 59461006 59461197 -42411972 + L2 LINE L2 3069 3271 -1 1280 197 211 11 chr13 59461356 59461736 -42411433 - MSTB2 LTR MaLR 0 457 2 344 125 0 0 chr13 59462421 59462477 -42410692 - MER5C DNA MER1_type -200 124 69 204 349 0 75 chr13 59462543 59462677 -42410492 + L2 LINE L2 728 3272 0 233 188 31 0 chr13 59462677 59462741 -42410428 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 1324 178 33 131 chr13 59463050 59463324 -42409845 + Tigger7 DNA MER2_type 109 408 -2079 189 0 0 0 chr13 59463324 59463345 -42409824 + (GA)n Simple_repeat Simple_repeat 2 22 0 1324 178 33 131 chr13 59463345 59463582 -42409587 + Tigger7 DNA MER2_type 408 2486 -1 423 294 114 22 chr13 59465373 59465601 -42407568 - L3 LINE CR1 -2 1575 1327 780 262 34 42 chr13 59465893 59466156 -42407013 + MIR SINE MIR 2 262 0 27 73 0 0 chr13 59466437 59466492 -42406677 + AT_rich Low_complexity Low_complexity 1 55 0 13218 78 4 16 chr13 59468397 59471032 -42402137 - L1PA7 LINE L1 -8 6146 3533 826 185 128 5 chr13 59471120 59471315 -42401854 - MER20 DNA MER1_type 0 219 1 313 187 49 73 chr13 59471529 59471652 -42401517 - MLT1J1 LTR MaLR -52 394 275 2216 220 42 46 chr13 59471958 59472525 -42400644 - L1ME1 LINE L1 -64 6496 5931 1261 225 16 49 chr13 59472525 59472911 -42400258 - MLT1A2 LTR MaLR 0 374 2 2216 220 42 46 chr13 59472911 59472992 -42400177 - L1ME1 LINE L1 -629 5931 5851 1347 30 0 0 chr13 59472987 59473156 -42400013 - L1P LINE L1 -2999 3147 2979 * 17174 51 2 0 chr13 59473157 59474665 -42398504 + L1PA5 LINE L1 3201 4709 -1445 2471 65 7 3 chr13 59474665 59474975 -42398194 + AluY SINE Alu 1 311 0 17174 51 2 0 chr13 59474975 59476424 -42396745 + L1PA5 LINE L1 4709 6153 -1 304 252 46 40 chr13 59476450 59476601 -42396568 + L1ME3A LINE L1 6019 6170 0 695 218 31 74 chr13 59476623 59477008 -42396161 - L1ME1 LINE L1 -744 5796 5326 1268 234 17 59 chr13 59477010 59477126 -42396043 + MLT1A2 LTR MaLR 35 154 -220 1892 144 21 0 chr13 59477126 59477410 -42395759 - AluSx SINE Alu -22 290 1 1268 234 17 59 chr13 59477410 59477648 -42395521 + MLT1A2 LTR MaLR 154 374 0 3049 232 52 46 chr13 59477648 59478511 -42394658 - L1ME1 LINE L1 -1210 5330 4474 1514 213 108 48 chr13 59478511 59478985 -42394184 - MLT1D LTR MaLR -3 502 1 3049 232 52 46 chr13 59478985 59480342 -42392827 - L1ME1 LINE L1 -2066 4474 2541 1450 168 12 12 chr13 59480342 59480609 -42392560 - AluJo SINE Alu 0 305 39 3049 232 52 46 chr13 59480609 59480766 -42392403 - L1ME1 LINE L1 -3999 2541 2386 237 377 32 7 chr13 59481456 59481610 -42391559 - L1ME1 LINE L1 -6362 178 21 1923 225 21 0 chr13 59482269 59482642 -42390527 - MER70A LTR ERVL -2 470 90 824 195 6 37 chr13 59482641 59482805 -42390364 - MER70A LTR ERVL -313 159 1 * 257 226 65 0 chr13 59482820 59482882 -42390287 - MIR SINE MIR -108 154 89 3283 180 31 25 chr13 59483321 59484005 -42389164 + MER76 LTR ERV 1 688 0 284 48 24 0 chr13 59486091 59486133 -42387036 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2259 106 10 3 chr13 59487659 59487970 -42385199 + AluSq SINE Alu 1 313 0 402 315 60 32 chr13 59488057 59488273 -42384896 + MLT1H LTR MaLR 115 336 -213 624 137 0 26 chr13 59488396 59488513 -42384656 + L1MA6 LINE L1 6182 6295 -5 275 321 88 19 chr13 59489109 59489268 -42383901 + MIR SINE MIR 6 175 -87 1999 137 0 0 chr13 59490278 59490571 -42382598 - AluSq SINE Alu -20 293 1 310 247 97 0 chr13 59491458 59491551 -42381618 - MLT1J1 LTR MaLR 0 446 345 284 188 129 12 chr13 59491795 59491880 -42381289 - L1ME LINE L1 -4579 1501 1407 2200 266 100 33 chr13 59491953 59493279 -42379890 - L1ME LINE L1 -4679 1401 4 707 287 132 37 chr13 59493436 59493837 -42379332 - MLT1J2 LTR MaLR 0 450 12 1828 142 65 34 chr13 59493837 59494190 -42378979 + THE1B LTR MaLR 1 364 0 1558 148 148 22 chr13 59495400 59495724 -42377445 + MLT1A1 LTR MaLR 1 365 0 510 336 43 5 chr13 59496259 59496467 -42376702 + MIR SINE MIR 39 254 -8 219 293 0 0 chr13 59497057 59497115 -42376054 - MIR SINE MIR -65 197 140 2021 133 16 68 chr13 59497375 59497742 -42375427 - MER7A DNA MER2_type 0 346 1 1307 148 5 28 chr13 59497794 59498010 -42375159 + AluJb SINE Alu 91 301 -11 258 280 13 0 chr13 59498283 59498358 -42374811 + MIR SINE MIR 86 161 -101 185 159 23 0 chr13 59498477 59498521 -42374648 + CT-rich Low_complexity Low_complexity 3 47 0 2661 135 17 7 chr13 59500223 59500645 -42372524 - MSTA LTR MaLR -2 426 1 930 175 0 12 chr13 59500955 59501115 -42372054 + FAM SINE Alu 4 162 -8 2257 111 3 10 chr13 59501115 59501421 -42371748 - AluSq SINE Alu -9 304 1 1757 159 10 17 chr13 59501465 59501755 -42371414 + AluJb SINE Alu 1 288 -24 318 361 26 36 chr13 59502242 59502436 -42370733 + L2 LINE L2 2934 3125 -147 1728 193 48 0 chr13 59503930 59504261 -42368908 - MER7A DNA MER2_type 0 346 2 365 291 51 19 chr13 59504757 59504915 -42368254 - L1M4 LINE L1 -1701 4445 4283 572 311 131 61 chr13 59505288 59505731 -42367438 - HAL1 LINE L1 -919 1588 1089 2028 148 0 0 chr13 59505731 59506041 -42367128 - AluSx SINE Alu -2 310 1 572 311 131 61 chr13 59506041 59506207 -42366962 - HAL1 LINE L1 -1418 1089 936 268 333 152 18 chr13 59506605 59506888 -42366281 - L2 LINE L2 -243 3070 2700 290 182 78 13 chr13 59507870 59507947 -42365222 - MIR SINE MIR -35 227 146 294 348 193 0 chr13 59507985 59508166 -42365003 - MIR SINE MIR -1 261 46 629 337 75 18 chr13 59508431 59508766 -42364403 + LTR33 LTR ERVL 115 468 -53 21 0 0 0 chr13 59508807 59508828 -42364341 + AT_rich Low_complexity Low_complexity 1 21 0 233 300 0 14 chr13 59510018 59510088 -42363081 + MLT1L LTR MaLR 4 72 -543 29 0 0 25 chr13 59511826 59511844 -42361325 + AT_rich Low_complexity Low_complexity 1 18 -21 2063 126 3 3 chr13 59511844 59512145 -42361024 - AluSq SINE Alu -12 301 1 29 0 0 25 chr13 59512145 59512166 -42361003 + AT_rich Low_complexity Low_complexity 18 39 0 245 303 0 0 chr13 59512345 59512411 -42360758 + MLT1K LTR MaLR 521 586 -2 246 246 0 16 chr13 59513126 59513211 -42359958 + (TATATG)n Simple_repeat Simple_repeat 1 83 0 261 0 0 0 chr13 59513211 59513240 -42359929 + (CA)n Simple_repeat Simple_repeat 2 30 0 2035 220 31 47 chr13 59513359 59513995 -42359174 - L1MC4a LINE L1 -1919 5889 5264 21 0 0 0 chr13 59514279 59514300 -42358869 + AT_rich Low_complexity Low_complexity 1 21 0 244 220 140 10 chr13 59514338 59514438 -42358731 - L1MC4a LINE L1 -1299 4847 4735 264 248 18 35 chr13 59514603 59514716 -42358453 - L1P LINE L1 -3757 2389 2279 241 82 41 0 chr13 59514808 59514857 -42358312 + (TA)n Simple_repeat Simple_repeat 2 52 0 21 82 0 0 chr13 59514913 59514962 -42358207 + AT_rich Low_complexity Low_complexity 1 49 0 406 290 88 111 chr13 59515408 59516094 -42357075 - HAL1 LINE L1 -773 1734 1065 2333 66 0 66 chr13 59516127 59516446 -42356723 - AluY SINE Alu -9 302 5 41090 33 39 1 chr13 59516774 59522713 -42350456 + L1PA3 LINE L1 1 6155 0 25 51 0 0 chr13 59522784 59522823 -42350346 + AT_rich Low_complexity Low_complexity 1 39 0 21 89 0 0 chr13 59523050 59523106 -42350063 + AT_rich Low_complexity Low_complexity 1 56 0 267 289 132 53 chr13 59523284 59523398 -42349771 + L2 LINE L2 3150 3272 0 26 0 0 0 chr13 59523996 59524022 -42349147 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 59524234 59524256 -42348913 + AT_rich Low_complexity Low_complexity 1 22 0 2387 35 41 0 chr13 59525873 59526163 -42347006 + AluY SINE Alu 1 302 -9 416 250 179 22 chr13 59526238 59526391 -42346778 - MIR SINE MIR -3 259 71 1514 156 164 29 chr13 59526391 59526738 -42346431 - MSTD LTR MaLR -2 394 1 416 250 179 22 chr13 59526738 59526768 -42346401 - MIR SINE MIR -191 71 47 26 30 0 0 chr13 59526928 59526961 -42346208 + AT_rich Low_complexity Low_complexity 1 33 0 1496 190 0 52 chr13 59527838 59528165 -42345004 + AluJo SINE Alu 2 311 -1 279 0 0 0 chr13 59528165 59528196 -42344973 + (TA)n Simple_repeat Simple_repeat 1 31 0 290 136 27 64 chr13 59528275 59528385 -42344784 + (TATAA)n Simple_repeat Simple_repeat 5 110 0 * 395 182 40 14 chr13 59528364 59528512 -42344657 + (TA)n Simple_repeat Simple_repeat 1 152 0 758 147 93 0 chr13 59528624 59528753 -42344416 + MSTC LTR MaLR 1 141 -287 844 250 14 9 chr13 59528807 59529023 -42344146 + MER97b DNA MER1_type? 1 217 -836 243 222 19 0 chr13 59529018 59529072 -42344097 - MER97a DNA MER1_type? -839 55 1 * 26 0 0 0 chr13 59529702 59529728 -42343441 + AT_rich Low_complexity Low_complexity 1 26 0 30 27 0 0 chr13 59529809 59529846 -42343323 + AT_rich Low_complexity Low_complexity 1 37 0 2185 153 45 29 chr13 59529892 59530311 -42342858 + MSTC LTR MaLR 1 426 -2 2354 154 32 0 chr13 59530427 59530868 -42342301 + L1MA5 LINE L1 5844 6298 -2 995 167 0 28 chr13 59530876 59531056 -42342113 + FRAM SINE Alu 2 176 0 920 128 75 114 chr13 59532277 59532504 -42340665 + MER30 DNA MER1_type 5 222 -8 245 158 0 0 chr13 59532851 59532889 -42340280 - MER2 DNA MER2_type -28 317 280 1193 166 19 0 chr13 59532938 59533143 -42340026 - MER2 DNA MER2_type -135 210 2 246 32 0 0 chr13 59533600 59533631 -42339538 + (TTG)n Simple_repeat Simple_repeat 3 33 0 216 191 0 0 chr13 59533776 59533818 -42339351 + (CATA)n Simple_repeat Simple_repeat 3 44 0 327 25 0 0 chr13 59534101 59534141 -42339028 + (CA)n Simple_repeat Simple_repeat 1 40 0 34 0 0 0 chr13 59534421 59534455 -42338714 + AT_rich Low_complexity Low_complexity 1 34 0 337 310 78 9 chr13 59536806 59536922 -42336247 + MIR SINE MIR 25 148 -114 256 262 65 56 chr13 59537852 59537959 -42335210 - MLT1F1 LTR MaLR -399 168 61 3892 103 69 0 chr13 59538195 59538789 -42334380 + LTR24C LTR ERV1 1 635 0 226 125 42 21 chr13 59539251 59539299 -42333870 + MER5B DNA MER1_type 53 101 -77 833 350 65 23 chr13 59539328 59539808 -42333361 + L2 LINE L2 831 1330 -1984 1265 246 62 38 chr13 59539813 59540264 -42332905 + MLT1C LTR MaLR 6 467 0 302 204 225 21 chr13 59540288 59540479 -42332690 + L2 LINE L2 1324 1553 -1761 520 83 14 0 chr13 59540504 59540576 -42332593 - MADE1 DNA Mariner -7 73 1 858 304 24 73 chr13 59540587 59540998 -42332171 + L2 LINE L2 1603 1993 -1321 295 204 102 20 chr13 59541894 59541992 -42331177 + LTR16C LTR ERVL 385 490 -1 1035 161 71 38 chr13 59542049 59542260 -42330909 + MLT1C LTR MaLR 26 243 -224 494 201 82 15 chr13 59542260 59542394 -42330775 + MLT1A2 LTR MaLR 1 143 -247 219 69 0 0 chr13 59542624 59542653 -42330516 + (TC)n Simple_repeat Simple_repeat 1 29 0 887 210 5 16 chr13 59542677 59542863 -42330306 + MLT1A2 LTR MaLR 187 370 -4 1428 150 9 0 chr13 59542868 59543094 -42330075 + MLT1C LTR MaLR 240 467 0 372 317 19 77 chr13 59543592 59543800 -42329369 + MIR3 SINE MIR 13 208 0 728 172 53 7 chr13 59544601 59544784 -42328385 + L1MB5 LINE L1 6008 6197 0 240 213 5 179 chr13 59545032 59545239 -42327930 - L1MC5 LINE L1 -51 7910 7740 274 280 36 71 chr13 59545421 59545589 -42327580 - L1MC5 LINE L1 -399 7562 7401 336 301 98 10 chr13 59545604 59545797 -42327372 - L1MC4a LINE L1 -1035 6773 6564 298 325 26 8 chr13 59546064 59546181 -42326988 + L2 LINE L2 2601 2719 -595 239 316 40 80 chr13 59550226 59550501 -42322668 - L2 LINE L2 -1004 2310 2047 539 260 102 41 chr13 59550561 59550757 -42322412 - MIR SINE MIR -26 236 29 180 135 0 0 chr13 59551453 59551490 -42321679 + (T)n Simple_repeat Simple_repeat 1 37 0 897 196 46 41 chr13 59551954 59552148 -42321021 + AluJo SINE Alu 1 195 -117 300 294 91 21 chr13 59553737 59553880 -42319289 - MIR SINE MIR -16 246 94 187 364 35 60 chr13 59554694 59554937 -42318232 + L2 LINE L2 2703 2949 -323 892 196 72 5 chr13 59554937 59555131 -42318038 + MER3 DNA MER1_type 1 207 -2 187 364 35 60 chr13 59555131 59555229 -42317940 + L2 LINE L2 2949 3048 -224 24 0 0 0 chr13 59556208 59556232 -42316937 + GC_rich Low_complexity Low_complexity 1 24 0 210 246 0 35 chr13 59556530 59556587 -42316582 + CT-rich Low_complexity Low_complexity 1 55 0 477 0 0 0 chr13 59558653 59558706 -42314463 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 382 318 71 50 chr13 59558708 59558988 -42314181 + L1ME1 LINE L1 122 407 -5712 2329 115 8 11 chr13 59559080 59559436 -42313733 + THE1A LTR MaLR 1 355 0 373 294 66 33 chr13 59559799 59560142 -42313027 + L1ME1 LINE L1 980 1257 -4862 584 308 19 56 chr13 59560368 59560728 -42312441 + L1ME1 LINE L1 3886 4232 -1897 1664 68 41 0 chr13 59560873 59561094 -42312075 + MER30 DNA MER1_type 1 230 0 260 203 29 0 chr13 59561211 59561280 -42311889 + (CATA)n Simple_repeat Simple_repeat 2 72 0 571 306 70 26 chr13 59561306 59561763 -42311406 + L1ME1 LINE L1 4507 4983 -1146 516 272 97 11 chr13 59561863 59562261 -42310908 + L1ME1 LINE L1 5114 5548 -599 845 205 18 6 chr13 59562268 59562434 -42310735 - LTR33 LTR ERVL -12 509 342 537 241 71 47 chr13 59562540 59562710 -42310459 - LTR33 LTR ERVL -347 174 1 434 282 86 74 chr13 59562710 59563061 -42310108 + L1ME1 LINE L1 5545 5899 -254 1050 230 137 33 chr13 59563276 59563671 -42309498 - L1ME LINE L1 -459 5707 5272 651 287 5 0 chr13 59563737 59563932 -42309237 + L1ME1 LINE L1 5940 6135 -14 1154 241 56 14 chr13 59564763 59565120 -42308049 - MLT1A2 LTR MaLR -2 372 1 1073 240 90 73 chr13 59565546 59565690 -42307479 - L1MC5 LINE L1 -49 7912 7772 2119 140 0 3 chr13 59565690 59565997 -42307172 - AluJb SINE Alu -5 307 2 1073 240 90 73 chr13 59565997 59566267 -42306902 - L1MC5 LINE L1 -189 7772 7481 1902 96 85 0 chr13 59566267 59566527 -42306642 + AluSx SINE Alu 1 282 -30 1073 240 90 73 chr13 59566527 59566765 -42306404 - L1MC5 LINE L1 -480 7481 7248 334 281 44 35 chr13 59567352 59567466 -42305703 + MIR SINE MIR 8 122 -140 231 228 70 0 chr13 59567572 59567629 -42305540 + MIR SINE MIR 110 170 -92 1554 182 52 33 chr13 59568938 59569288 -42303881 + MLT1A1 LTR MaLR 1 357 -8 800 195 12 6 chr13 59569416 59569580 -42303589 - MER5A DNA MER1_type -8 181 17 194 202 245 64 chr13 59569689 59569783 -42303386 - L2 LINE L2 -1 3271 3161 200 184 0 0 chr13 59569870 59569908 -42303261 - L2 LINE L2 -251 3062 3025 263 351 123 45 chr13 59570289 59570497 -42302672 + L2 LINE L2 2914 3159 -113 207 100 0 0 chr13 59570497 59570527 -42302642 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 263 351 123 45 chr13 59570527 59570651 -42302518 + L2 LINE L2 3159 3272 0 482 0 17 0 chr13 59570736 59570794 -42302375 + (TTTTA)n Simple_repeat Simple_repeat 3 61 0 1579 152 10 69 chr13 59570797 59571086 -42302083 - AluJo SINE Alu -30 282 11 550 226 68 7 chr13 59571237 59571383 -42301786 - L1MA10 LINE L1 0 6334 6180 26 30 0 0 chr13 59571392 59571425 -42301744 + AT_rich Low_complexity Low_complexity 1 33 0 2844 188 75 5 chr13 59571798 59572399 -42300770 - MER99 DNA DNA -1 827 185 278 236 0 0 chr13 59573074 59573129 -42300040 - MER99 DNA DNA -725 103 49 1145 279 109 25 chr13 59573832 59574398 -42298771 + HAL1 LINE L1 1191 1804 -703 344 302 142 45 chr13 59574400 59574668 -42298501 + HAL1 LINE L1 1850 2143 -364 1094 240 59 11 chr13 59574703 59574991 -42298178 + MLT1F1 LTR MaLR 246 567 0 426 108 0 0 chr13 59575685 59575750 -42297419 + (TCCCC)n Simple_repeat Simple_repeat 5 69 0 2007 131 15 21 chr13 59575777 59576112 -42297057 - MER1B DNA MER1_type 0 337 5 183 350 51 34 chr13 59576825 59576942 -42296227 - L2 LINE L2 0 3272 3154 22 0 0 0 chr13 59576985 59577007 -42296162 + AT_rich Low_complexity Low_complexity 1 22 0 690 239 5 76 chr13 59578511 59578621 -42294548 + MER45A DNA AcHobo 8 101 -1480 2087 130 3 16 chr13 59578621 59578937 -42294232 - AluSx SINE Alu 0 312 1 690 239 5 76 chr13 59578937 59579010 -42294159 + MER45A DNA AcHobo 101 178 0 299 293 72 27 chr13 59579172 59579394 -42293775 + L1ME3A LINE L1 4788 5019 -1127 390 312 75 3 chr13 59579507 59579789 -42293380 + L1ME3A LINE L1 5255 5556 -606 735 130 15 0 chr13 59579799 59579935 -42293234 - L1MA5A LINE L1 0 6297 6154 6625 66 18 0 chr13 59579941 59581019 -42292150 - L1PA7 LINE L1 0 6154 5058 2248 92 0 0 chr13 59581019 59581335 -42291834 + L1PA7 LINE L1 4748 5063 -1083 1115 110 18 153 chr13 59581339 59581621 -42291548 - L1MA7 LINE L1 -127 6164 5921 456 280 145 25 chr13 59581619 59581901 -42291268 + L1ME3A LINE L1 5561 5876 -294 * 21 0 0 0 chr13 59582385 59582406 -42290763 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr13 59583399 59583421 -42289748 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 526 255 166 0 chr13 59584212 59584357 -42288812 + MER5A DNA MER1_type 9 177 -12 25 65 0 0 chr13 59584980 59585026 -42288143 + AT_rich Low_complexity Low_complexity 1 46 0 428 139 13 0 chr13 59585716 59585795 -42287374 + CT-rich Low_complexity Low_complexity 2 81 0 1244 141 0 5 chr13 59585797 59585989 -42287180 - AluSx SINE Alu -121 191 1 325 209 254 1 chr13 59586546 59586736 -42286433 + LTR54B LTR ERV1 1 269 -229 525 335 25 18 chr13 59586854 59587129 -42286040 - MER34 LTR ERV1 -265 277 1 335 340 25 25 chr13 59587774 59587933 -42285236 + MIR SINE MIR 25 183 -79 536 210 84 48 chr13 59588080 59588247 -42284922 - MER5B DNA MER1_type -3 175 3 273 348 86 27 chr13 59589590 59589777 -42283392 + MLT1K LTR MaLR 208 405 -183 194 309 103 0 chr13 59589879 59589947 -42283222 + L3 LINE CR1 1500 1574 -3 1854 130 82 23 chr13 59589975 59590329 -42282840 + THE1C LTR MaLR 1 375 0 9603 134 48 3 chr13 59590329 59591841 -42281328 + THE1C-int LTR MaLR 1 1580 0 1909 125 85 23 chr13 59591841 59592194 -42280975 + THE1C LTR MaLR 1 375 0 258 217 0 14 chr13 59593943 59594012 -42279157 - L1MEc LINE L1 -4113 2283 2216 2396 63 3 13 chr13 59594725 59595028 -42278141 - AluSp SINE Alu -11 302 3 2018 109 10 14 chr13 59595149 59595443 -42277726 - AluY SINE Alu -18 293 1 299 95 0 0 chr13 59595455 59595497 -42277672 - Alu SINE Alu -5 296 255 4376 178 31 25 chr13 59595645 59597215 -42275954 + L1PB4 LINE L1 4564 6141 -15 225 324 29 19 chr13 59597625 59597730 -42275439 + MIR SINE MIR 151 256 -6 308 336 59 66 chr13 59598168 59598424 -42274745 - L2 LINE L2 -27 3245 2992 189 0 0 0 chr13 59599435 59599456 -42273713 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 1714 232 71 69 chr13 59599728 59600250 -42272919 - MLT1E LTR MaLR -3 590 68 1296 126 21 0 chr13 59600351 59600542 -42272627 + AluSp SINE Alu 100 294 -19 613 308 126 41 chr13 59600645 59600986 -42272183 + L2 LINE L2 2903 3272 0 190 204 102 20 chr13 59601203 59601252 -42271917 - L2 LINE L2 -19 3253 3201 610 225 54 126 chr13 59601263 59601636 -42271533 - L2 LINE L2 0 3313 2968 528 270 107 6 chr13 59601641 59601819 -42271350 - L2 LINE L2 -1354 1960 1765 298 254 254 0 chr13 59601791 59601905 -42271264 - MIR SINE MIR -74 188 46 * 324 0 0 0 chr13 59602345 59602381 -42270788 + (TG)n Simple_repeat Simple_repeat 2 37 0 541 200 103 46 chr13 59602500 59602695 -42270474 - L1MC5 LINE L1 -34 7927 7722 246 276 102 31 chr13 59603004 59603102 -42270067 + L2 LINE L2 2949 3053 -219 2034 112 0 18 chr13 59603381 59603667 -42269502 + AluSc SINE Alu 9 289 -20 200 372 51 0 chr13 59604163 59604241 -42268928 + L2 LINE L2 3168 3249 -23 5889 215 77 64 chr13 59604256 59605581 -42267588 + L1MCa LINE L1 7 1313 -5113 2231 97 3 3 chr13 59605581 59605871 -42267298 + AluSg SINE Alu 1 290 -20 5889 215 77 64 chr13 59605871 59607476 -42265693 + L1MCa LINE L1 1313 3029 -3397 645 211 45 6 chr13 59607485 59607641 -42265528 + L1MCa LINE L1 3249 3410 -3016 1800 109 4 0 chr13 59607887 59608162 -42265007 + L1MA4 LINE L1 6018 6293 -7 242 194 16 0 chr13 59608190 59608252 -42264917 + (CAT)n Simple_repeat Simple_repeat 3 65 0 1749 168 89 8 chr13 59610013 59610385 -42262784 + MSTB LTR MaLR 1 432 0 252 0 0 0 chr13 59612759 59612787 -42260382 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1488 169 37 113 chr13 59613375 59613754 -42259415 - MLT1A1 LTR MaLR -15 350 1 1903 144 0 17 chr13 59614644 59614959 -42258210 - AluSx SINE Alu 0 311 2 2509 25 0 0 chr13 59615388 59615695 -42257474 + AluY SINE Alu 1 307 0 252 366 69 0 chr13 59615794 59615895 -42257274 + L2 LINE L2 3115 3222 -50 227 285 73 99 chr13 59617187 59617338 -42255831 - L2 LINE L2 -2065 1249 1103 243 239 0 45 chr13 59617363 59617430 -42255739 - L2 LINE L2 -3 3269 3206 262 271 84 65 chr13 59617903 59618010 -42255159 - L2 LINE L2 -606 2708 2600 2289 131 21 24 chr13 59618095 59618470 -42254699 + THE1C LTR MaLR 2 375 0 1914 165 58 6 chr13 59619363 59619709 -42253460 + THE1B LTR MaLR 1 364 0 24 77 0 0 chr13 59620789 59620841 -42252328 + AT_rich Low_complexity Low_complexity 1 52 0 621 220 192 0 chr13 59621037 59621219 -42251950 - MIR SINE MIR 0 262 46 257 329 0 0 chr13 59621502 59621572 -42251597 + MIR3 SINE MIR 94 163 -45 1473 231 92 29 chr13 59622074 59622520 -42250649 + MLT2B1 LTR ERVL 1 474 -46 221 229 0 0 chr13 59622520 59622568 -42250601 + (TG)n Simple_repeat Simple_repeat 2 49 0 310 140 0 0 chr13 59622570 59622622 -42250547 + MLT2C2 LTR ERVL 400 462 -2 697 204 149 45 chr13 59623167 59623368 -42249801 + MER58A DNA MER1_type 1 222 -2 2250 102 0 0 chr13 59624855 59625170 -42247999 + AluSq SINE Alu 1 315 0 1894 108 26 56 chr13 59625871 59626177 -42246992 - AluSg SINE Alu -13 297 1 26 64 0 0 chr13 59626471 59626518 -42246651 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr13 59627353 59627375 -42245794 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 59627501 59627534 -42245635 + AT_rich Low_complexity Low_complexity 1 33 0 1349 126 46 4 chr13 59627605 59627844 -42245325 + Tigger7 DNA MER2_type 2236 2484 -3 297 287 43 32 chr13 59627892 59627986 -42245183 + MIR3 SINE MIR 108 202 -6 32 43 0 0 chr13 59628623 59628669 -42244500 + AT_rich Low_complexity Low_complexity 1 46 0 246 105 0 0 chr13 59629504 59629542 -42243627 + (T)n Simple_repeat Simple_repeat 1 38 0 965 321 56 38 chr13 59630189 59630846 -42242323 + HERVL LTR ERVL 3107 3775 -1879 2099 230 143 36 chr13 59631177 59631868 -42241301 + LTR41 LTR ERVL 1 765 -8 539 301 41 20 chr13 59631877 59632073 -42241096 + HERVL LTR ERVL 4166 4365 -1399 540 336 28 28 chr13 59632650 59632936 -42240233 + LTR16C LTR ERVL 206 491 0 329 363 83 29 chr13 59632976 59633467 -42239702 + L2 LINE L2 2091 2608 -706 243 0 0 0 chr13 59635680 59635707 -42237462 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 192 125 0 0 chr13 59637238 59637270 -42235899 + (TG)n Simple_repeat Simple_repeat 2 33 0 197 353 76 50 chr13 59637358 59637477 -42235692 + L2 LINE L2 3142 3263 -9 2246 153 33 31 chr13 59638349 59638898 -42234271 + MLT2A2 LTR ERVL 1 554 0 591 230 123 7 chr13 59639006 59639224 -42233945 - MIR SINE MIR -3 259 9 180 274 118 29 chr13 59639884 59639986 -42233183 - L3 LINE CR1 -177 1400 1290 302 325 8 17 chr13 59640257 59640377 -42232792 - L2 LINE L2 -2 3311 3193 25 65 0 0 chr13 59642980 59643026 -42230143 + AT_rich Low_complexity Low_complexity 1 46 0 195 304 36 0 chr13 59643539 59643595 -42229574 - MIR3 SINE MIR -51 157 100 316 175 21 0 chr13 59644753 59644841 -42228328 + L1 LINE L1 4594 4686 -1460 194 330 10 40 chr13 59644957 59645057 -42228112 - L3 LINE CR1 -14 1563 1467 497 273 73 29 chr13 59645105 59645310 -42227859 - MIR SINE MIR -29 233 20 673 362 91 28 chr13 59645811 59646275 -42226894 - L3 LINE CR1 -206 1371 879 313 119 119 0 chr13 59646294 59646361 -42226808 - L1MD2 LINE L1 0 6359 6285 2756 200 44 0 chr13 59646363 59646908 -42226261 - L1MD1 LINE L1 -33 6209 5641 390 189 95 0 chr13 59646904 59647043 -42226126 - L1MD1 LINE L1 -772 5374 5225 * 2473 193 8 37 chr13 59647040 59647641 -42225528 + L1 LINE L1 4273 4856 -1290 452 305 62 23 chr13 59647821 59648077 -42225092 - L1MCc LINE L1 -5824 599 334 1608 127 48 70 chr13 59648077 59648393 -42224776 - MER1B DNA MER1_type 0 339 31 1218 247 48 0 chr13 59648394 59648710 -42224459 - L1MCc LINE L1 -6075 348 18 310 231 43 68 chr13 59648729 59648821 -42224348 + L1ME3A LINE L1 5101 5191 -955 2115 99 19 22 chr13 59648821 59649133 -42224036 + AluY SINE Alu 1 311 0 310 231 43 68 chr13 59649133 59649157 -42224012 + L1ME3A LINE L1 5191 5214 -932 1852 255 97 35 chr13 59649228 59649333 -42223836 + L1ME3A LINE L1 5259 5356 -814 2334 102 3 0 chr13 59649333 59649638 -42223531 + AluSp SINE Alu 1 306 -7 1852 255 97 35 chr13 59649638 59650343 -42222826 + L1ME3A LINE L1 5356 6120 -50 240 255 53 11 chr13 59650366 59650460 -42222709 + L1ME3A LINE L1 6070 6167 -3 3044 60 36 7 chr13 59651141 59651559 -42221610 - L1PA7 LINE L1 0 6154 5725 1963 232 74 12 chr13 59651593 59652081 -42221088 + MLT1E2 LTR MaLR 52 569 -57 347 241 0 0 chr13 59652101 59652180 -42220989 + MLT1E2 LTR MaLR 539 617 -7 572 312 32 45 chr13 59652487 59652734 -42220435 - MIR SINE MIR -11 251 8 1736 190 0 0 chr13 59653255 59653544 -42219625 - AluJo SINE Alu -23 289 1 21 36 0 0 chr13 59653616 59653644 -42219525 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 59654761 59654782 -42218387 + AT_rich Low_complexity Low_complexity 1 21 0 326 343 139 12 chr13 59655493 59655831 -42217338 + L2 LINE L2 1733 2113 -1201 296 125 0 18 chr13 59655836 59655892 -42217277 + (TG)n Simple_repeat Simple_repeat 2 56 0 * 386 181 0 56 chr13 59655891 59656035 -42217134 + (TA)n Simple_repeat Simple_repeat 1 136 0 275 111 0 19 chr13 59656024 59656078 -42217091 + (CA)n Simple_repeat Simple_repeat 2 54 0 * 331 361 78 31 chr13 59656145 59656400 -42216769 + L2 LINE L2 2552 2818 -496 183 343 41 14 chr13 59656484 59656557 -42216612 - L2 LINE L2 -342 2971 2897 1537 220 66 66 chr13 59656703 59657204 -42215965 + MLT2B1 LTR ERVL 1 410 -4 541 202 18 0 chr13 59657211 59657320 -42215849 + MLT1E2-int LTR MaLR 5 115 -1620 * 1154 224 49 109 chr13 59657315 59657880 -42215289 + MLT1E2-int LTR MaLR 264 885 -486 319 213 12 0 chr13 59657928 59658008 -42215161 + MLT-int LTR MaLR 687 767 -968 1677 237 73 23 chr13 59658183 59658622 -42214547 + MLT1A2-int LTR MaLR 1271 1731 -4 440 201 76 89 chr13 59658630 59658806 -42214363 + MLT1A2 LTR MaLR 20 187 -187 231 200 22 0 chr13 59658806 59658851 -42214318 + CT-rich Low_complexity Low_complexity 3 48 0 691 229 48 12 chr13 59658855 59659021 -42214148 + MLT1A2 LTR MaLR 203 374 0 591 244 26 21 chr13 59660153 59660346 -42212823 - MER114 LTR ERV 0 648 455 266 220 34 127 chr13 59660435 59660553 -42212616 - L1ME3 LINE L1 -52 6110 6004 1124 214 80 11 chr13 59660583 59660957 -42212212 - MER114 LTR ERV -220 428 29 514 244 5 128 chr13 59661254 59661316 -42211853 - L1MC4 LINE L1 0 8042 7974 2221 114 0 0 chr13 59661316 59661614 -42211555 + AluSx SINE Alu 1 298 -14 514 244 5 128 chr13 59661614 59661956 -42211213 - L1MC4 LINE L1 -68 7974 7688 1998 246 90 2 chr13 59662041 59662529 -42210640 - MLT1F LTR MaLR -10 532 2 1683 164 0 50 chr13 59662567 59662921 -42210248 - AluJb SINE Alu 0 339 1 254 292 0 0 chr13 59663006 59663078 -42210091 - MER94 DNA DNA -62 72 1 548 312 39 60 chr13 59663405 59663738 -42209431 - L2 LINE L2 0 3313 2988 21 36 0 0 chr13 59664422 59664450 -42208719 + AT_rich Low_complexity Low_complexity 1 28 0 384 316 57 17 chr13 59665161 59665338 -42207831 + MIR SINE MIR 8 191 -71 21 57 0 0 chr13 59665401 59665436 -42207733 + AT_rich Low_complexity Low_complexity 1 35 0 229 219 0 41 chr13 59665933 59666006 -42207163 + T-rich Low_complexity Low_complexity 5 74 0 973 274 120 27 chr13 59666196 59666888 -42206281 + L1ME3A LINE L1 5157 5929 -241 23 33 0 0 chr13 59668651 59668681 -42204488 + AT_rich Low_complexity Low_complexity 1 30 0 201 39 0 0 chr13 59671138 59671164 -42202005 + (CAA)n Simple_repeat Simple_repeat 1 26 0 262 244 11 11 chr13 59671309 59671399 -42201770 + (TA)n Simple_repeat Simple_repeat 2 91 0 893 303 121 41 chr13 59672535 59673056 -42200113 - MLT1L LTR MaLR -49 527 3 5251 187 61 34 chr13 59673281 59674507 -42198662 + L1MC3 LINE L1 5205 5327 -819 2361 90 0 0 chr13 59674507 59674818 -42198351 + AluY SINE Alu 1 311 0 5251 187 61 34 chr13 59674818 59674892 -42198277 + L1MC3 LINE L1 5327 5397 -749 1133 239 65 47 chr13 59674892 59675374 -42197795 - MER39 LTR ERV1 0 705 5 2390 184 90 13 chr13 59675374 59675895 -42197274 + L1MC3 LINE L1 6545 7105 -680 263 325 49 61 chr13 59676459 59676622 -42196547 + MIR3 SINE MIR 3 163 -45 25 0 0 0 chr13 59678264 59678289 -42194880 + AT_rich Low_complexity Low_complexity 1 25 0 192 135 0 0 chr13 59679064 59679101 -42194068 + (TC)n Simple_repeat Simple_repeat 1 37 0 242 261 22 116 chr13 59679713 59679790 -42193379 - MLT1K LTR MaLR -114 474 414 180 77 0 0 chr13 59679790 59679816 -42193353 + (CA)n Simple_repeat Simple_repeat 1 26 0 242 261 22 116 chr13 59679816 59679876 -42193293 - MLT1K LTR MaLR -174 414 350 537 163 52 39 chr13 59679926 59680079 -42193090 + MER103 DNA DNA 10 164 -2 1583 191 0 0 chr13 59680978 59681250 -42191919 + AluJb SINE Alu 27 298 -14 969 187 0 0 chr13 59681256 59681411 -42191758 - FAM SINE Alu -30 155 1 396 255 0 20 chr13 59682799 59682897 -42190272 + MER5A DNA MER1_type 9 104 -85 812 189 31 0 chr13 59684992 59685151 -42188018 - FRAM SINE Alu -12 164 1 190 357 18 0 chr13 59685980 59686036 -42187133 - L2 LINE L2 -88 3184 3128 26 0 0 0 chr13 59686102 59686128 -42187041 + AT_rich Low_complexity Low_complexity 1 26 0 537 303 97 13 chr13 59686518 59686757 -42186412 + MIR SINE MIR 2 261 -1 15236 38 1 1 chr13 59687069 59689674 -42183495 - L1PA5 LINE L1 -4 6150 3545 198 0 0 0 chr13 59689674 59689696 -42183473 + (T)n Simple_repeat Simple_repeat 1 22 0 200 242 16 16 chr13 59689873 59689935 -42183234 + (CTATT)n Simple_repeat Simple_repeat 3 64 0 2612 156 75 60 chr13 59689937 59690567 -42182602 + MER73 LTR ERVL 6 644 0 759 167 0 0 chr13 59690567 59690729 -42182440 + (CCTAT)n Simple_repeat Simple_repeat 1 162 0 225 83 0 0 chr13 59690892 59690928 -42182241 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2184 85 0 0 chr13 59690933 59691214 -42181955 - AluY SINE Alu -30 281 1 223 342 56 18 chr13 59691374 59691542 -42181627 + MIR SINE MIR 55 227 -35 233 185 0 37 chr13 59691573 59691627 -42181542 - L2 LINE L2 0 3313 3262 198 0 0 0 chr13 59691658 59691680 -42181489 + (ATG)n Simple_repeat Simple_repeat 3 24 0 703 163 0 15 chr13 59692036 59692171 -42180998 - L1PB4 LINE L1 0 6156 6024 340 266 44 44 chr13 59693137 59693250 -42179919 - MIR SINE MIR -84 178 66 824 253 48 4 chr13 59693486 59693715 -42179454 - MLT1H LTR MaLR -300 249 11 223 293 189 38 chr13 59693716 59693822 -42179347 - L2 LINE L2 -15 3257 3136 69 59 0 0 chr13 59694367 59694485 -42178684 + AT_rich Low_complexity Low_complexity 1 118 0 326 336 67 8 chr13 59694579 59694713 -42178456 + MIR3 SINE MIR 21 162 -46 225 0 0 0 chr13 59694780 59694817 -42178352 + (GGA)n Simple_repeat Simple_repeat 1 62 0 225 0 0 0 chr13 59694817 59694842 -42178327 + (GGA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr13 59695083 59695110 -42178059 + (TA)n Simple_repeat Simple_repeat 2 28 0 2041 156 120 5 chr13 59696485 59696869 -42176300 - MSTA LTR MaLR 0 428 1 239 253 0 0 chr13 59697087 59697170 -42175999 + L1ME LINE L1 5772 5854 -267 260 266 89 48 chr13 59699140 59699264 -42173905 - L2 LINE L2 -6 3307 3179 2179 100 7 10 chr13 59699562 59699851 -42173318 + AluSq SINE Alu 1 288 -25 1994 158 0 3 chr13 59700969 59701273 -42171896 - AluJb SINE Alu -4 308 6 10249 128 22 87 chr13 59701798 59703910 -42169259 - Tigger1 DNA MER2_type 0 2418 443 1949 171 37 70 chr13 59704078 59704535 -42168634 - Tigger1 DNA MER2_type -1975 443 2 364 288 176 0 chr13 59704538 59704663 -42168506 + MER63A DNA MER1_type 64 210 0 205 217 22 0 chr13 59705362 59705408 -42167761 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 2314 239 13 55 chr13 59705631 59706238 -42166931 + L1ME1 LINE L1 5371 5937 -229 2114 133 3 3 chr13 59706238 59706539 -42166630 + AluSx SINE Alu 1 301 -11 2314 239 13 55 chr13 59706539 59706754 -42166415 + L1ME1 LINE L1 5937 6159 -7 336 237 124 24 chr13 59706757 59706926 -42166243 - LTR50 LTR ERVL -127 668 483 320 148 99 37 chr13 59706972 59707053 -42166116 - LTR50 LTR ERVL -474 321 236 3811 133 155 92 chr13 59707082 59708539 -42164630 + pTR5 LTR ERV1 745 2438 0 463 215 63 51 chr13 59708576 59708734 -42164435 - LTR50 LTR ERVL -615 180 21 244 186 0 0 chr13 59708807 59708850 -42164319 + MER69 DNA AcHobo 2481 2523 -3 541 103 0 0 chr13 59709997 59710075 -42163094 - MER41D LTR ERV1 -479 78 1 184 320 48 72 chr13 59710394 59710519 -42162650 + L3 LINE CR1 522 643 -934 388 337 52 40 chr13 59710921 59711170 -42161999 + L3b LINE CR1 1104 1355 -228 817 225 21 11 chr13 59715283 59715470 -42157699 + MER5A DNA MER1_type 1 189 0 846 259 62 71 chr13 59715476 59715882 -42157287 - HsTC2a DNA Tc2 -341 403 2 947 184 37 0 chr13 59715882 59716045 -42157124 + FRAM SINE Alu 1 169 -7 488 157 11 73 chr13 59716077 59716268 -42156901 + GA-rich Low_complexity Low_complexity 2 180 0 443 185 0 9 chr13 59716277 59716385 -42156784 + G-rich Low_complexity Low_complexity 2 108 0 222 71 0 0 chr13 59716385 59716413 -42156756 + (GGAA)n Simple_repeat Simple_repeat 4 31 0 33 56 0 0 chr13 59717365 59717419 -42155750 + AT_rich Low_complexity Low_complexity 1 54 0 336 301 122 2 chr13 59718066 59718199 -42154970 + MIR SINE MIR 3 147 -62 2097 117 45 36 chr13 59718980 59719339 -42153830 - THE1B LTR MaLR -2 362 1 240 313 94 10 chr13 59719346 59719442 -42153727 + L2 LINE L2 3209 3312 -1 749 244 57 11 chr13 59719487 59719663 -42153506 + MER5A DNA MER1_type 5 188 -1 551 213 189 0 chr13 59720713 59720835 -42152334 - MER5A DNA MER1_type -6 183 39 251 259 0 0 chr13 59721940 59721998 -42151171 + (CA)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr13 59722714 59722735 -42150434 + AT_rich Low_complexity Low_complexity 1 21 0 186 71 0 0 chr13 59722775 59722803 -42150366 + (T)n Simple_repeat Simple_repeat 1 28 0 222 195 37 0 chr13 59722922 59723004 -42150165 + (TA)n Simple_repeat Simple_repeat 1 85 0 810 198 42 0 chr13 59723374 59723541 -42149628 + MER58B DNA MER1_type 168 341 0 1970 127 187 8 chr13 59723763 59724126 -42149043 + MSTA LTR MaLR 1 428 0 330 26 0 0 chr13 59724156 59724195 -42148974 + (CA)n Simple_repeat Simple_repeat 2 40 0 399 325 96 10 chr13 59725079 59725276 -42147893 - MIR SINE MIR -28 234 21 618 177 0 81 chr13 59726546 59726670 -42146499 + FLAM_A SINE Alu 1 114 -19 1794 191 7 10 chr13 59726933 59727236 -42145933 + AluJo SINE Alu 1 302 -10 195 274 242 11 chr13 59727712 59727807 -42145362 - L2 LINE L2 0 3313 3197 229 286 82 31 chr13 59728958 59729056 -42144113 - L2 LINE L2 -12 3301 3199 235 238 9 38 chr13 59729573 59729678 -42143491 + (TA)n Simple_repeat Simple_repeat 2 103 0 188 150 100 0 chr13 59731930 59731970 -42141199 - L2 LINE L2 -15 3298 3255 21 82 0 0 chr13 59733559 59733608 -42139561 + AT_rich Low_complexity Low_complexity 1 49 0 2171 179 30 8 chr13 59736144 59736546 -42136623 + LTR57 LTR ERVL 1 411 0 1253 207 0 69 chr13 59736547 59736852 -42136317 + LTR57-int LTR ERVL 2 285 -5058 2258 116 0 7 chr13 59736883 59737193 -42135976 + AluSx SINE Alu 1 308 -4 7051 128 58 31 chr13 59737299 59738168 -42135001 + LTR57-int LTR ERVL 301 1220 -4123 2169 108 3 0 chr13 59738168 59738464 -42134705 + AluY SINE Alu 1 297 -14 7051 128 58 31 chr13 59738464 59738935 -42134234 + LTR57-int LTR ERVL 1220 1677 -3666 423 183 0 0 chr13 59738932 59739014 -42134155 + LTR57-int LTR ERVL 2515 2596 -2747 * 354 148 0 0 chr13 59738999 59739053 -42134116 + LTR57-int LTR ERVL 2792 2845 -2498 * 6972 156 5 2 chr13 59739041 59740175 -42132994 + LTR57-int LTR ERVL 3882 5019 -324 1156 195 75 8 chr13 59740175 59740241 -42132928 + AluJo SINE Alu 55 115 -197 216 0 0 0 chr13 59740241 59740265 -42132904 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1156 195 75 8 chr13 59740265 59740439 -42132730 + AluJo SINE Alu 115 311 -1 1967 150 3 0 chr13 59740447 59740761 -42132408 + LTR57-int LTR ERVL 5029 5343 0 2315 138 50 20 chr13 59740769 59741168 -42132001 + LTR57 LTR ERVL 1 411 0 304 365 39 86 chr13 59742116 59742499 -42130670 + L2 LINE L2 2897 3261 -11 1587 184 3 24 chr13 59742700 59742993 -42130176 + AluJo SINE Alu 1 287 -25 2135 114 20 0 chr13 59743395 59743692 -42129477 + AluSg SINE Alu 1 303 -7 1234 237 29 30 chr13 59743713 59744092 -42129077 + MLT1E3 LTR MaLR 200 623 -1 339 232 16 155 chr13 59744137 59744331 -42128838 - MIR SINE MIR -31 231 65 207 318 69 53 chr13 59744463 59744652 -42128517 - L2 LINE L2 -189 3083 2892 961 212 130 82 chr13 59745071 59745150 -42128019 + MSTD LTR MaLR 2 76 -320 2296 93 0 13 chr13 59745150 59745451 -42127718 + AluSx SINE Alu 1 297 -15 961 212 130 82 chr13 59745451 59745748 -42127421 + MSTD LTR MaLR 76 396 0 2325 52 3 0 chr13 59746317 59746628 -42126541 - AluY SINE Alu 0 311 3 354 304 122 21 chr13 59746633 59746870 -42126299 + HAL1 LINE L1 818 1078 -1429 820 243 79 8 chr13 59746884 59747151 -42126018 + L1MCc LINE L1 20 305 -6118 452 304 82 0 chr13 59747353 59747524 -42125645 + L1MCc LINE L1 971 1155 -5268 728 281 77 11 chr13 59747529 59747981 -42125188 + HAL1 LINE L1 1139 1620 -887 846 181 170 11 chr13 59748261 59748449 -42124720 - MER20 DNA MER1_type -1 218 1 443 284 44 6 chr13 59749093 59749276 -42123893 - MLT1J2 LTR MaLR -3 447 258 352 338 92 26 chr13 59751470 59751698 -42121471 - MIR SINE MIR 0 262 20 1914 154 7 3 chr13 59751872 59752170 -42120999 - AluJb SINE Alu -13 299 1 271 305 57 28 chr13 59752172 59752313 -42120856 + MIR SINE MIR 52 196 -66 573 168 26 26 chr13 59752587 59752700 -42120469 - FLAM_C SINE Alu -20 123 11 309 204 61 10 chr13 59752708 59752806 -42120363 + LTR48 LTR ERV1 386 488 -299 315 263 106 25 chr13 59752853 59753013 -42120156 + MER34 LTR ERV1 370 542 0 384 379 92 35 chr13 59753014 59753439 -42119730 - L2 LINE L2 0 3272 2824 713 267 148 5 chr13 59754433 59754650 -42118519 - MIR SINE MIR -6 256 9 2285 101 17 0 chr13 59755314 59755610 -42117559 + AluSg SINE Alu 1 301 -9 1869 158 0 30 chr13 59755837 59756140 -42117029 + AluJo SINE Alu 1 294 -18 2268 97 19 10 chr13 59757980 59758289 -42114880 + AluSx SINE Alu 1 312 0 186 211 26 0 chr13 59758810 59758848 -42114321 - L2 LINE L2 -11 3302 3264 510 249 74 91 chr13 59759282 59759632 -42113537 - MLT1I LTR MaLR 0 409 66 429 297 103 7 chr13 59759632 59759777 -42113392 - MIR SINE MIR -89 173 15 239 150 17 0 chr13 59760008 59760068 -42113101 + (ATG)n Simple_repeat Simple_repeat 3 63 0 452 249 88 28 chr13 59760087 59760268 -42112901 - MIR SINE MIR -15 247 56 1570 179 10 32 chr13 59761856 59762164 -42111005 + AluJo SINE Alu 1 301 -11 433 286 148 6 chr13 59762741 59762923 -42110246 - L2 LINE L2 -3 3310 3103 889 180 109 136 chr13 59763273 59763751 -42109418 + MER4C LTR ERV1 1 465 0 267 215 62 0 chr13 59763899 59763964 -42109205 - L2 LINE L2 0 3313 3245 22 56 0 0 chr13 59764110 59764146 -42109023 + AT_rich Low_complexity Low_complexity 1 36 0 1574 170 0 14 chr13 59764186 59764463 -42108706 - AluJo SINE Alu -39 273 1 798 173 22 32 chr13 59764546 59764733 -42108436 - MER33 DNA MER1_type -261 63 1 665 178 9 0 chr13 59765436 59765543 -42107626 + FLAM_C SINE Alu 1 108 -35 188 83 0 56 chr13 59765570 59765606 -42107563 + (TTTTC)n Simple_repeat Simple_repeat 4 37 0 299 293 60 45 chr13 59766109 59766463 -42106706 - MLT1L LTR MaLR -72 543 120 23 0 0 0 chr13 59766610 59766633 -42106536 + AT_rich Low_complexity Low_complexity 1 23 0 1879 183 57 18 chr13 59769710 59770237 -42102932 + MER65-int LTR ERV1 2849 3811 -1125 1966 242 69 4 chr13 59770352 59770843 -42102326 + MER65-int LTR ERV1 3605 4127 -744 650 158 0 17 chr13 59770925 59771045 -42102124 + MER65A LTR ERV1 327 444 -1 1909 116 31 20 chr13 59771543 59771835 -42101334 - AluSc SINE Alu -14 295 1 1692 180 3 52 chr13 59772348 59772675 -42100494 + AluJo SINE Alu 2 312 0 2194 116 0 19 chr13 59774641 59774959 -42098210 - AluSx SINE Alu 0 312 1 1373 203 101 0 chr13 59775481 59775757 -42097412 + AluJo SINE Alu 1 304 -8 243 88 0 0 chr13 59775757 59775791 -42097378 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 23 54 0 0 chr13 59776604 59776641 -42096528 + AT_rich Low_complexity Low_complexity 1 37 0 362 130 43 0 chr13 59776907 59776976 -42096193 - L1MA4A LINE L1 -12 6291 6220 2136 167 30 8 chr13 59776985 59777381 -42095788 - LTR57 LTR ERVL 0 411 7 12401 188 12 20 chr13 59777928 59781795 -42091374 - L1PB1 LINE L1 0 6867 3042 7500 107 18 10 chr13 59781764 59783476 -42089693 - L1PB1 LINE L1 -4355 2508 634 * 911 205 15 0 chr13 59783476 59783671 -42089498 - L1PB1 LINE L1 -6663 200 3 390 113 0 0 chr13 59783675 59783737 -42089432 - L1MA4 LINE L1 -113 6187 6126 845 214 13 134 chr13 59784798 59785075 -42088094 + LTR8 LTR ERV1 1 261 -436 1353 194 95 57 chr13 59785182 59785604 -42087565 + LTR8A LTR ERV1 287 724 -3 341 22 22 0 chr13 59785768 59785814 -42087355 + (TG)n Simple_repeat Simple_repeat 2 48 0 1454 229 3 7 chr13 59785947 59786289 -42086880 + AluJo SINE Alu 1 341 0 565 109 30 0 chr13 59786423 59786524 -42086645 + MER53 DNA DNA 12 115 -74 547 81 0 50 chr13 59786667 59786766 -42086403 + MER53 DNA DNA 94 187 -2 280 248 214 0 chr13 59787689 59787806 -42085363 - MIR SINE MIR -16 246 105 271 282 17 28 chr13 59787819 59788000 -42085169 - L1ME LINE L1 -3617 2463 2285 1031 231 19 19 chr13 59788004 59788325 -42084844 - L1M4 LINE L1 -860 5286 4966 249 211 15 113 chr13 59788357 59788490 -42084679 - L1ME LINE L1 -5941 129 10 7248 27 0 0 chr13 59788861 59790021 -42083148 + L1PA3 LINE L1 5008 6167 0 4551 204 10 11 chr13 59790589 59792324 -42080845 + L1M1 LINE L1 13 1832 -5733 228 217 0 43 chr13 59843015 59843079 -42030090 + MIR SINE MIR 37 94 -114 460 345 219 23 chr13 59843094 59844041 -42029128 + L2 LINE L2 1633 2764 -550 243 295 144 58 chr13 59844231 59844370 -42028799 + L2 LINE L2 3121 3271 -1 205 205 0 0 chr13 59844821 59844860 -42028309 + T-rich Low_complexity Low_complexity 1 39 0 271 321 36 36 chr13 59844971 59845111 -42028058 + MIR SINE MIR 5 144 -118 2589 203 4 8 chr13 59845123 59845600 -42027569 + MER70B LTR ERVL 1 475 -103 496 240 20 27 chr13 59845764 59845910 -42027259 + Charlie7 DNA MER1_type 408 552 -2060 560 281 92 4 chr13 59846048 59846286 -42026883 - MIR SINE MIR 0 262 4 1808 169 50 67 chr13 59846380 59846799 -42026370 + MER34B LTR ERV1 14 425 -140 696 240 12 114 chr13 59846801 59847047 -42026122 - MLT1E3 LTR MaLR -121 503 288 349 300 54 15 chr13 59847081 59847203 -42025966 - MLT1E3 LTR MaLR -503 151 25 356 83 0 50 chr13 59847203 59847263 -42025906 - MLT2B1 LTR ERVL 0 520 464 204 188 0 0 chr13 59847263 59847295 -42025874 + (CA)n Simple_repeat Simple_repeat 1 32 0 227 238 32 16 chr13 59847318 59847381 -42025788 + MIR SINE MIR 81 144 -118 207 0 0 0 chr13 59847393 59847416 -42025753 + (GA)n Simple_repeat Simple_repeat 2 24 0 2250 219 9 5 chr13 59847423 59847844 -42025325 - MLT2B3 LTR ERVL -60 494 72 405 136 0 0 chr13 59847936 59847995 -42025174 - MLT2B3 LTR ERVL -495 59 1 1936 160 0 7 chr13 59848855 59849161 -42024008 + AluJb SINE Alu 1 304 -8 409 308 113 41 chr13 59849180 59849647 -42023522 + L1M4 LINE L1 2405 2905 -3241 1657 191 3 20 chr13 59849652 59849951 -42023218 + AluJb SINE Alu 3 296 -16 2386 153 21 21 chr13 59849962 59850427 -42022742 + L1 LINE L1 4815 5279 -867 1377 223 47 113 chr13 59850540 59851341 -42021828 + LTR8A LTR ERV1 1 727 0 1316 183 153 0 chr13 59851583 59851845 -42021324 - AluJo SINE Alu 0 302 1 383 296 244 16 chr13 59852400 59852913 -42020256 + L1ME4a LINE L1 5366 5995 -126 2199 116 0 0 chr13 59852914 59853208 -42019961 - AluSc SINE Alu -15 294 1 834 243 0 0 chr13 59853681 59853850 -42019319 - FRAM SINE Alu -8 168 1 316 299 63 31 chr13 59854682 59854838 -42018331 - MER5A DNA MER1_type -13 176 1 3632 63 0 0 chr13 59856299 59856777 -42016392 - L1PA5 LINE L1 -1049 5097 4620 7331 42 3 6 chr13 59856777 59857849 -42015320 + L1PA5 LINE L1 5084 6154 0 406 291 0 0 chr13 59857872 59857982 -42015187 + MIR SINE MIR 95 204 -58 214 214 24 0 chr13 59857985 59858069 -42015100 + (TATG)n Simple_repeat Simple_repeat 1 86 0 23 33 0 0 chr13 59858072 59858102 -42015067 + AT_rich Low_complexity Low_complexity 1 30 0 11498 102 29 0 chr13 59859802 59861538 -42011631 - L1PA8 LINE L1 -698 5433 3647 5149 109 3 3 chr13 59861538 59862280 -42010889 + L1PA8 LINE L1 5429 6170 -2 21 0 0 0 chr13 59863307 59863328 -42009841 + AT_rich Low_complexity Low_complexity 1 21 0 24 24 0 24 chr13 59864492 59864512 -42008657 + AT_rich Low_complexity Low_complexity 1 20 -21 1999 174 11 19 chr13 59864512 59864880 -42008289 + MLT1A1 LTR MaLR 1 365 0 24 24 0 24 chr13 59864880 59864901 -42008268 + AT_rich Low_complexity Low_complexity 20 41 0 681 298 103 32 chr13 59865106 59865515 -42007654 - L2 LINE L2 -832 2482 2045 290 383 17 11 chr13 59865534 59865714 -42007455 - L2 LINE L2 -1167 2147 1967 332 338 122 40 chr13 59865977 59866495 -42006674 - L2 LINE L2 -2190 1124 565 231 253 114 0 chr13 59866873 59866952 -42006217 + MLT1F1 LTR MaLR 344 431 -136 335 347 89 5 chr13 59867374 59867587 -42005582 - L2 LINE L2 -2553 761 531 402 85 0 0 chr13 59867968 59868027 -42005142 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 253 301 39 0 chr13 59868411 59868514 -42004655 - MIR3 SINE MIR -5 203 97 180 158 0 0 chr13 59869066 59869104 -42004065 + T-rich Low_complexity Low_complexity 1 38 0 2383 223 53 65 chr13 59869302 59869685 -42003484 - L1ME1 LINE L1 -4 6162 5776 2449 82 0 0 chr13 59869685 59869988 -42003181 - AluY SINE Alu -8 303 1 2383 223 53 65 chr13 59869988 59870392 -42002777 - L1ME1 LINE L1 -390 5776 5384 13943 128 40 25 chr13 59870651 59873033 -42000136 - Tigger1 DNA MER2_type 0 2418 1 225 289 12 60 chr13 59875349 59875432 -41997737 - L2 LINE L2 0 3272 3194 237 337 94 17 chr13 59875485 59875666 -41997503 - L2 LINE L2 -2519 795 601 312 218 23 23 chr13 59876302 59876389 -41996780 - MER69 DNA AcHobo -3 2523 2437 7318 41 2 1 chr13 59876884 59877905 -41995264 + L1PA4 LINE L1 5134 6155 0 24 32 0 0 chr13 59877958 59877989 -41995180 + AT_rich Low_complexity Low_complexity 1 31 0 1401 273 102 30 chr13 59878236 59878734 -41994435 + L3 LINE CR1 958 1491 -86 22 0 0 0 chr13 59879521 59879543 -41993626 + AT_rich Low_complexity Low_complexity 1 22 0 271 329 144 28 chr13 59879805 59880312 -41992857 - L2 LINE L2 -928 2386 1821 2012 144 79 15 chr13 59880368 59880708 -41992461 + THE1B LTR MaLR 1 362 -2 1289 168 0 9 chr13 59880763 59880977 -41992192 - AluJb SINE Alu -14 298 87 448 266 7 43 chr13 59881189 59881328 -41991841 - LTR33 LTR ERVL -357 164 31 506 303 37 20 chr13 59881328 59881572 -41991597 + L2 LINE L2 834 1081 -2233 1748 224 54 11 chr13 59881572 59882015 -41991154 - MLT1C LTR MaLR 0 467 6 1892 309 32 30 chr13 59882020 59882798 -41990371 + L2 LINE L2 1077 1856 -1458 587 242 124 11 chr13 59882798 59882984 -41990185 + MIR SINE MIR 11 217 -45 1547 145 0 0 chr13 59883094 59883315 -41989854 + AluSx SINE Alu 1 221 -91 1622 223 86 84 chr13 59883582 59884233 -41988936 - MLT1E1 LTR MaLR -2 652 1 520 328 97 20 chr13 59884266 59884711 -41988458 + L1MC4a LINE L1 5442 5920 -1888 24 77 0 0 chr13 59884845 59884897 -41988272 + AT_rich Low_complexity Low_complexity 1 52 0 310 243 111 22 chr13 59885001 59885217 -41987952 + L1ME4a LINE L1 5611 5844 -302 1955 124 25 0 chr13 59886091 59886210 -41986959 + AluSq SINE Alu 1 116 -197 195 69 0 0 chr13 59886210 59886239 -41986930 + (TAA)n Simple_repeat Simple_repeat 1 29 0 1955 124 25 0 chr13 59886239 59886401 -41986768 + AluSq SINE Alu 116 289 -24 1231 226 52 86 chr13 59886475 59887076 -41986093 - L1MD3 LINE L1 -30 7950 7248 404 262 28 28 chr13 59887079 59887186 -41985983 - MLT1F1 LTR MaLR -423 144 38 520 199 76 0 chr13 59887186 59887317 -41985852 - L1MC3 LINE L1 -707 7078 6938 1008 222 122 57 chr13 59887324 59887603 -41985566 - AluJb SINE Alu -5 297 1 327 320 138 14 chr13 59890484 59890759 -41982410 - MER102b DNA MER1_type -24 317 9 24 53 0 0 chr13 59891567 59891605 -41981564 + AT_rich Low_complexity Low_complexity 1 38 0 936 45 0 0 chr13 59892717 59892828 -41980341 - AluY SINE Alu -13 298 188 1294 225 3 90 chr13 59892862 59893208 -41979961 + MLT1B LTR MaLR 1 316 -74 1244 189 37 57 chr13 59893210 59893506 -41979663 + MLT2D LTR ERVL 125 414 0 519 293 44 5 chr13 59893531 59893736 -41979433 - MIR SINE MIR -4 258 46 3329 79 17 6 chr13 59896505 59896975 -41976194 - L1PA11 LINE L1 -3 6171 5697 727 115 0 0 chr13 59896976 59897080 -41976089 - L1PA11 LINE L1 -629 5545 5442 27 73 0 0 chr13 59897080 59897135 -41976034 + AT_rich Low_complexity Low_complexity 1 55 0 240 196 54 45 chr13 59898546 59898658 -41974511 + L1ME4a LINE L1 6001 6113 -8 3007 249 119 73 chr13 59898914 59900334 -41972835 + Charlie7 DNA MER1_type 254 1811 -801 1633 189 11 3 chr13 59900334 59900620 -41972549 - AluJo SINE Alu -24 288 1 3007 249 119 73 chr13 59900620 59901390 -41971779 + Charlie7 DNA MER1_type 1811 2544 -68 819 290 68 0 chr13 59902333 59902640 -41970529 + L1ME3A LINE L1 5508 5835 -335 327 239 77 135 chr13 59902757 59903016 -41970153 + L1ME3A LINE L1 5762 6005 -165 470 266 44 13 chr13 59903104 59903262 -41969907 - MLT1J LTR MaLR -92 419 257 388 176 0 0 chr13 59903941 59904009 -41969160 - AluS SINE Alu -2 298 231 1084 111 0 0 chr13 59904009 59904153 -41969016 - AluSq/x SINE Alu -168 144 1 243 225 67 45 chr13 59904672 59904761 -41968408 + MIR SINE MIR 100 190 -72 293 332 19 77 chr13 59905526 59905571 -41967598 - MIR3 SINE MIR -9 199 153 391 189 13 192 chr13 59905571 59905883 -41967286 - MER112 DNA MER1_type 0 256 1 293 332 19 77 chr13 59905883 59906045 -41967124 - MIR3 SINE MIR -55 153 4 1702 143 50 18 chr13 59906095 59906374 -41966795 + AluJo SINE Alu 1 288 -24 1590 249 81 37 chr13 59906492 59907058 -41966111 + MLT1E LTR MaLR 3 593 0 1750 154 51 43 chr13 59907262 59907633 -41965536 + THE1C LTR MaLR 2 375 0 3000 167 71 25 chr13 59907655 59908043 -41965126 + L1MB7 LINE L1 5488 5919 -265 351 0 0 0 chr13 59908043 59908082 -41965087 + (TA)n Simple_repeat Simple_repeat 2 40 0 3000 167 71 25 chr13 59908082 59908341 -41964828 + L1MB7 LINE L1 5919 6165 -19 3367 184 30 63 chr13 59909082 59909936 -41963233 - LTR1B LTR ERV1 0 826 1 211 187 29 28 chr13 59910210 59910273 -41962896 + GA-rich Low_complexity Low_complexity 5 51 0 204 302 73 21 chr13 59910533 59910629 -41962540 + L2 LINE L2 2963 3063 -209 595 255 185 5 chr13 59911001 59911201 -41961968 + MIR SINE MIR 23 258 -4 249 335 67 52 chr13 59911895 59912223 -41960946 + L2 LINE L2 2373 2705 -609 198 299 78 0 chr13 59912444 59912521 -41960648 + L2 LINE L2 2977 3059 -213 267 356 30 0 chr13 59912628 59912729 -41960440 - L2 LINE L2 0 3272 3169 213 300 0 0 chr13 59912870 59912920 -41960249 + L2 LINE L2 3243 3292 -21 521 296 139 11 chr13 59913719 59914006 -41959163 + MLT1L LTR MaLR 66 389 -226 238 246 16 0 chr13 59914074 59914135 -41959034 + MLT1L LTR MaLR 547 608 -7 1474 272 16 0 chr13 59914314 59914685 -41958484 + L1MDb LINE L1 8 384 -6025 * 1818 205 50 75 chr13 59914681 59915218 -41957951 + L1MD2 LINE L1 5836 6359 0 2105 120 7 0 chr13 59916785 59917076 -41956093 + AluSx SINE Alu 1 293 -19 2045 102 42 0 chr13 59918217 59918501 -41954668 - AluSx SINE Alu -16 296 1 336 292 81 6 chr13 59919176 59919337 -41953832 - L1M4 LINE L1 -2202 4755 4583 670 254 83 0 chr13 59920010 59920191 -41952978 - MIR SINE MIR 0 262 67 531 299 93 44 chr13 59920372 59920693 -41952476 + HAL1b LINE L1 53 389 -959 668 232 7 0 chr13 59920889 59921027 -41952142 - L1M4 LINE L1 -5810 1049 911 298 227 76 50 chr13 59921022 59921141 -41952028 + HAL1b LINE L1 385 506 -842 * 267 275 22 51 chr13 59921215 59921353 -41951816 + HAL1b LINE L1 650 783 -565 431 308 159 16 chr13 59921660 59921975 -41951194 + L1MC4a LINE L1 5554 5913 -1895 225 0 0 0 chr13 59922301 59922326 -41950843 + (T)n Simple_repeat Simple_repeat 1 25 0 366 299 136 0 chr13 59922558 59922712 -41950457 - MLT1J LTR MaLR -19 492 318 270 0 0 0 chr13 59923465 59923495 -41949674 + (TG)n Simple_repeat Simple_repeat 2 31 0 207 376 11 43 chr13 59923819 59924005 -41949164 + MIR3 SINE MIR 17 196 -12 222 37 0 0 chr13 59925179 59925206 -41947963 + (T)n Simple_repeat Simple_repeat 1 27 0 776 238 17 6 chr13 59925459 59925631 -41947538 + LTR28 LTR ERV1 1 174 -846 552 248 134 13 chr13 59925664 59925967 -41947202 + MER52A LTR ERV1 271 1305 -137 23 0 0 0 chr13 59926225 59926248 -41946921 + AT_rich Low_complexity Low_complexity 1 23 0 604 270 62 23 chr13 59926884 59927191 -41945978 - L1MC4a LINE L1 -343 5819 5711 336 204 23 45 chr13 59927241 59927329 -41945840 - MLT1H1 LTR MaLR 0 555 470 451 327 12 6 chr13 59927348 59927513 -41945656 - MLT1H1 LTR MaLR -188 367 202 5566 214 66 50 chr13 59928434 59929987 -41943182 + L1MB2 LINE L1 3330 4856 -1328 982 222 116 106 chr13 59929987 59930487 -41942682 - MLT1D LTR MaLR 0 505 1 5566 214 66 50 chr13 59930487 59930536 -41942633 + L1MB2 LINE L1 4856 4903 -1281 4064 135 33 23 chr13 59930536 59930804 -41942365 - L1PA15 LINE L1 0 6165 5901 512 75 12 25 chr13 59930804 59930884 -41942285 + MADE1 DNA Mariner 2 80 0 4064 135 33 23 chr13 59930884 59931109 -41942060 - L1PA15 LINE L1 -264 5901 5661 2533 63 0 0 chr13 59931109 59931412 -41941757 - AluY SINE Alu -7 304 2 4064 135 33 23 chr13 59931412 59931611 -41941558 - L1PA15 LINE L1 -504 5661 5465 5566 214 66 50 chr13 59931611 59932753 -41940416 + L1MB2 LINE L1 4903 6164 -20 23 0 0 0 chr13 59932753 59932776 -41940393 + AT_rich Low_complexity Low_complexity 1 23 0 282 29 0 0 chr13 59933821 59933856 -41939313 + (CA)n Simple_repeat Simple_repeat 2 36 0 * 351 0 0 0 chr13 59933855 59933894 -41939275 + (GA)n Simple_repeat Simple_repeat 2 40 0 1929 276 111 54 chr13 59933904 59934682 -41938487 + L1M4b LINE L1 21 753 -6102 189 26 51 26 chr13 59934682 59934721 -41938448 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1929 276 111 54 chr13 59934721 59935771 -41937398 + L1M4b LINE L1 753 1915 -4940 22079 77 15 1 chr13 59935797 59939662 -41933507 + L1PA6 LINE L1 2250 6139 -15 338 205 12 0 chr13 59939663 59939746 -41933423 + (CATA)n Simple_repeat Simple_repeat 2 85 0 2207 92 0 3 chr13 59939775 59940057 -41933112 + AluY SINE Alu 1 281 -30 321 98 0 0 chr13 59940016 59940057 -41933112 + Alu SINE Alu 242 305 0 187 43 0 0 chr13 59940057 59940080 -41933089 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 6397 84 36 0 chr13 59940304 59941302 -41931867 - L1PA10 LINE L1 -11 6157 5142 1706 230 115 37 chr13 59941315 59941548 -41931621 + L1ME1 LINE L1 5455 5668 -498 1899 159 3 3 chr13 59941548 59941850 -41931319 + AluJb SINE Alu 1 302 -10 1706 230 115 37 chr13 59941850 59942189 -41930980 + L1ME1 LINE L1 5668 6072 -94 414 188 69 10 chr13 59942189 59942290 -41930879 - LTR65 LTR ERV1 -401 268 162 332 311 36 56 chr13 59942343 59942539 -41930630 + L1 LINE L1 3478 3669 -2477 473 280 61 8 chr13 59942631 59942763 -41930406 - MIR SINE MIR -113 149 11 213 294 0 71 chr13 59942747 59942832 -41930337 + L2 LINE L2 3227 3305 -8 * 21 57 0 0 chr13 59942944 59942979 -41930190 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 59943026 59943054 -41930115 + AT_rich Low_complexity Low_complexity 1 28 0 2040 126 13 10 chr13 59943081 59943391 -41929778 + AluSx SINE Alu 1 311 -1 566 301 48 35 chr13 59944186 59944415 -41928754 + MIR SINE MIR 28 259 -3 413 298 66 15 chr13 59944435 59944633 -41928536 + L1ME LINE L1 5547 5754 -367 2094 286 52 59 chr13 59944719 59945493 -41927676 + L1MEc LINE L1 469 1232 -5593 1526 138 0 27 chr13 59945493 59945718 -41927451 + AluSx SINE Alu 1 219 -93 2094 286 52 59 chr13 59945718 59946142 -41927027 + L1MEc LINE L1 1232 1658 -5167 1000 89 0 14 chr13 59946148 59946294 -41926875 + AluSc SINE Alu 166 309 0 346 258 35 16 chr13 59946349 59946555 -41926614 + L1MEc LINE L1 1549 1856 -4788 305 250 50 25 chr13 59946557 59946637 -41926532 + L1MEc LINE L1 1736 1817 -4827 480 231 12 0 chr13 59946637 59946762 -41926407 + L1MB1 LINE L1 5476 5604 -687 * 5114 122 44 13 chr13 59946751 59947506 -41925663 + L1MA3 LINE L1 2273 3150 -4415 2072 128 0 26 chr13 59947506 59947811 -41925358 + AluSc SINE Alu 1 297 -12 5114 122 44 13 chr13 59947811 59948172 -41924997 + L1MA3 LINE L1 3150 3498 -4067 240 111 0 0 chr13 59948172 59948208 -41924961 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 392 176 0 99 chr13 59948213 59948355 -41924814 + G-rich Low_complexity Low_complexity 5 132 0 13635 182 33 9 chr13 59948358 59952523 -41920646 + L1MA3 LINE L1 3464 7724 0 516 266 99 34 chr13 59952530 59952914 -41920255 + L1MC5 LINE L1 7508 7916 -45 786 174 128 64 chr13 59952932 59953151 -41920018 + L1MB1 LINE L1 5935 6167 -1 300 154 0 0 chr13 59953174 59953226 -41919943 + (TA)n Simple_repeat Simple_repeat 1 52 0 664 268 7 33 chr13 59953227 59953499 -41919670 + L1MEc LINE L1 2028 2292 -4533 5093 209 49 18 chr13 59953521 59954847 -41918322 + L1M3 LINE L1 4003 5369 -777 396 74 0 0 chr13 59954843 59954897 -41918272 + L1M3 LINE L1 5596 5649 -522 * 344 160 53 0 chr13 59954897 59954964 -41918205 + L1MA9 LINE L1 6233 6311 -1 4496 263 112 10 chr13 59954964 59956252 -41916917 + L1MEc LINE L1 2283 3438 -3206 207 0 0 0 chr13 59956252 59956275 -41916894 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4496 263 112 10 chr13 59956275 59957504 -41915665 + L1MEc LINE L1 3438 5018 -1626 3017 159 16 17 chr13 59957559 59958076 -41915093 - MER34 LTR ERV1 0 542 27 1027 213 82 73 chr13 59958088 59958442 -41914727 + L1MEc LINE L1 5035 5384 -1260 2230 107 3 7 chr13 59958442 59958741 -41914428 + AluSp SINE Alu 1 298 -15 1027 213 82 73 chr13 59958741 59959175 -41913994 + L1MEc LINE L1 5384 5881 -763 2290 106 0 3 chr13 59959259 59959561 -41913608 - AluSg SINE Alu -9 301 1 1295 152 0 51 chr13 59959562 59959799 -41913370 + MLT1B LTR MaLR 34 258 -132 1995 259 61 11 chr13 59959972 59960500 -41912669 + MLT1F1 LTR MaLR 1 554 -13 29190 119 19 64 chr13 59961818 59968264 -41904905 + L1PA7 LINE L1 13 6153 -1 530 232 145 29 chr13 59969950 59970191 -41902978 - MER5C DNA MER1_type -55 269 1 542 261 65 0 chr13 59970206 59970344 -41902825 - MER5A DNA MER1_type -7 182 36 272 273 0 40 chr13 59970824 59970923 -41902246 + MIR SINE MIR 167 261 -1 2482 42 0 0 chr13 59970991 59971297 -41901872 - L1PA8 LINE L1 -6 6166 5861 291 366 51 37 chr13 59971665 59971938 -41901231 + LTR16B LTR ERVL 5 281 -183 27 49 0 0 chr13 59972850 59972891 -41900278 + AT_rich Low_complexity Low_complexity 1 41 0 1258 258 65 89 chr13 59973196 59973747 -41899422 - MLT1H LTR MaLR 0 549 12 563 170 144 27 chr13 59974757 59974945 -41898224 + L1MC5 LINE L1 7723 7932 -29 266 384 10 0 chr13 59975995 59976094 -41897075 + MIR SINE MIR 36 135 -127 187 54 54 0 chr13 59976820 59976857 -41896312 + CT-rich Low_complexity Low_complexity 2 40 0 244 343 47 29 chr13 59977558 59977832 -41895337 + L2 LINE L2 2136 2414 -900 272 261 151 50 chr13 59978162 59978281 -41894888 - L2 LINE L2 -1 3271 3141 663 239 129 0 chr13 59978363 59978518 -41894651 + MER96 DNA MER1_type? 1 175 0 521 158 11 189 chr13 59978852 59979042 -41894127 + MIR SINE MIR 107 262 0 303 208 208 46 chr13 59979363 59979493 -41893676 + L2 LINE L2 3161 3311 -2 281 326 63 60 chr13 59979509 59979794 -41893375 + L2 LINE L2 2460 2745 -569 981 219 90 57 chr13 59979794 59980034 -41893135 + L1MD2 LINE L1 5882 6113 -1882 378 0 0 0 chr13 59980034 59980076 -41893093 + (CA)n Simple_repeat Simple_repeat 2 43 0 981 219 90 57 chr13 59980076 59980265 -41892904 + L1MD2 LINE L1 6113 7965 -30 1061 261 120 13 chr13 59980529 59980961 -41892208 - MLT1H LTR MaLR -3 546 25 202 295 121 58 chr13 59982946 59983119 -41890050 - MIR SINE MIR -77 185 2 2569 53 0 0 chr13 59983267 59983570 -41889599 - AluY SINE Alu -8 303 1 896 283 61 4 chr13 59985016 59985263 -41887906 + MIR SINE MIR 2 262 0 1343 256 148 12 chr13 59985324 59985656 -41887513 - MLT1G1 LTR MaLR -5 590 305 4184 57 0 18 chr13 59985656 59986262 -41886907 - L1PA5 LINE L1 0 6154 5606 1343 256 148 12 chr13 59986262 59986448 -41886721 - MLT1G1 LTR MaLR -290 305 1 945 288 64 30 chr13 59986681 59987109 -41886060 + L2 LINE L2 2555 2994 -319 2787 129 9 2 chr13 59987109 59987534 -41885635 - MSTA LTR MaLR 0 428 1 945 288 64 30 chr13 59987534 59987618 -41885551 + L2 LINE L2 2994 3074 -239 267 255 112 0 chr13 59987883 59987981 -41885188 + MIR SINE MIR 58 166 -96 233 176 20 0 chr13 59988102 59988153 -41885016 + L1MC5 LINE L1 7848 7899 -62 207 0 0 0 chr13 59988399 59988422 -41884747 + (T)n Simple_repeat Simple_repeat 1 23 0 305 229 9 101 chr13 59990261 59990370 -41882799 - L1MC4 LINE L1 -1329 6713 6615 303 250 23 23 chr13 59990412 59990500 -41882669 - L1MC4 LINE L1 -1340 6702 6615 303 250 23 23 chr13 59990517 59990605 -41882564 - L1MC4 LINE L1 -1340 6702 6615 305 281 0 22 chr13 59990617 59990706 -41882463 - L1MC4 LINE L1 -1341 6701 6615 303 250 23 23 chr13 59990723 59990811 -41882358 - L1MC4 LINE L1 -1340 6702 6615 182 150 25 0 chr13 59990812 59990852 -41882317 + (TA)n Simple_repeat Simple_repeat 1 41 0 307 279 23 0 chr13 59990859 59990945 -41882224 - L1MC4 LINE L1 -1340 6702 6615 305 281 0 22 chr13 59990924 59991013 -41882156 - L1MC4 LINE L1 -1341 6701 6615 * 331 184 23 0 chr13 59990946 59991033 -41882136 + (TA)n Simple_repeat Simple_repeat 1 89 0 487 216 78 48 chr13 59991500 59991667 -41881502 - MIR SINE MIR -10 252 81 353 248 0 0 chr13 59991776 59991877 -41881292 + L1ME LINE L1 5191 5291 -855 1516 272 56 0 chr13 59991890 59992353 -41880816 + L1ME LINE L1 5263 5751 -419 403 316 29 0 chr13 59992537 59992779 -41880390 + (TA)n Simple_repeat Simple_repeat 1 248 0 2074 120 19 10 chr13 59993524 59993833 -41879336 + AluSx SINE Alu 1 312 0 1082 186 13 75 chr13 59994466 59994772 -41878397 + MER119 DNA MER1_type 296 582 -1 249 384 51 0 chr13 59995182 59995320 -41877849 + MIR3 SINE MIR 58 202 -6 2372 104 0 0 chr13 59996778 59997086 -41876083 - AluSg SINE Alu -2 308 1 217 336 49 28 chr13 59997230 59997373 -41875796 - MER5A DNA MER1_type 0 189 44 665 310 105 64 chr13 59997429 59998322 -41874847 + L2 LINE L2 2377 3313 0 248 296 49 28 chr13 60000003 60000147 -41873022 + L1MC/D LINE L1 5712 5856 -265 196 212 106 82 chr13 60000187 60000272 -41872897 - L2 LINE L2 -28 3244 3158 21 57 0 0 chr13 60000312 60000347 -41872822 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 60000509 60000544 -41872625 + AT_rich Low_complexity Low_complexity 1 35 0 1641 139 118 54 chr13 60000549 60001015 -41872154 + LTR54B LTR ERV1 1 496 -2 2249 99 7 0 chr13 60001105 60001399 -41871770 - AluSp SINE Alu -17 296 1 339 298 180 22 chr13 60002552 60002730 -41870439 + MIR SINE MIR 9 214 -48 380 273 52 47 chr13 60003291 60003463 -41869706 - MIR SINE MIR 0 262 90 580 273 43 52 chr13 60003694 60003936 -41869233 - MIR SINE MIR -17 245 4 1951 87 0 0 chr13 60003973 60004243 -41868926 - AluSc SINE Alu 0 306 37 212 263 40 13 chr13 60004246 60004322 -41868847 + L2 LINE L2 3226 3303 -10 * 481 204 32 96 chr13 60004307 60004464 -41868705 - MIR SINE MIR 0 262 116 186 263 0 0 chr13 60004476 60004533 -41868636 + GA-rich Low_complexity Low_complexity 1 57 0 868 242 131 10 chr13 60005520 60005818 -41867351 - MER46C DNA MER2_type 0 338 5 4464 167 52 38 chr13 60006042 60006984 -41866185 - L1MA7 LINE L1 -1 6290 5320 1763 143 24 0 chr13 60006984 60007278 -41865891 - L1PA16 LINE L1 -1 6165 5865 4464 167 52 38 chr13 60007278 60007845 -41865324 - L1MA7 LINE L1 -971 5320 4762 5696 161 22 47 chr13 60007846 60008196 -41864973 + L1 LINE L1 3576 3933 -2213 283 64 0 21 chr13 60008196 60008243 -41864926 - MADE1 DNA Mariner -34 46 1 5696 161 22 47 chr13 60008243 60008714 -41864455 + L1 LINE L1 3933 4406 -1740 2152 80 0 0 chr13 60008714 60008989 -41864180 + AluY SINE Alu 36 310 -1 5696 161 22 47 chr13 60008989 60009326 -41863843 + L1 LINE L1 4406 4750 -1396 368 310 63 29 chr13 60010364 60010704 -41862465 - MLT1J LTR MaLR -5 506 99 1048 189 4 64 chr13 60011003 60011236 -41861933 + MER20 DNA MER1_type 1 219 0 381 241 18 18 chr13 60012319 60012489 -41860680 + (CATA)n Simple_repeat Simple_repeat 4 173 0 538 320 6 6 chr13 60012497 60012672 -41860497 + (CA)n Simple_repeat Simple_repeat 1 175 0 1515 202 99 55 chr13 60012673 60013149 -41860020 + MLT1D LTR MaLR 1 549 0 303 296 65 29 chr13 60013517 60013719 -41859450 - MIR SINE MIR 0 262 12 26 30 0 0 chr13 60015239 60015272 -41857897 + AT_rich Low_complexity Low_complexity 1 33 0 210 156 0 0 chr13 60016038 60016083 -41857086 + CT-rich Low_complexity Low_complexity 3 47 0 716 231 7 0 chr13 60016463 60016606 -41856563 + MER82 DNA MER2_type 2 145 -508 906 294 41 17 chr13 60016805 60017149 -41856020 + L1M4 LINE L1 1880 2231 -5334 330 87 0 0 chr13 60017549 60017595 -41855574 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2045 113 51 0 chr13 60017597 60017890 -41855279 - AluSc SINE Alu -1 308 1 1554 177 15 4 chr13 60018391 60018657 -41854512 - AluJo SINE Alu -20 292 24 225 139 0 0 chr13 60019056 60019099 -41854070 + (CAGA)n Simple_repeat Simple_repeat 4 46 0 207 167 21 21 chr13 60020119 60020167 -41853002 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 7075 66 1 0 chr13 60020639 60022215 -41850954 + L1PA8 LINE L1 4579 6162 -10 414 275 22 0 chr13 60022561 60022652 -41850517 + MLT1G LTR MaLR 109 201 -394 498 122 0 129 chr13 60022681 60022820 -41850349 + FLAM_A SINE Alu 22 142 0 297 109 0 0 chr13 60022853 60022899 -41850270 + (TC)n Simple_repeat Simple_repeat 1 46 0 926 259 90 47 chr13 60022933 60023254 -41849915 + MLT1G LTR MaLR 250 584 -6 319 302 83 50 chr13 60023451 60023693 -41849476 + L1M4 LINE L1 2374 2623 -4840 298 231 110 11 chr13 60024124 60024215 -41848954 + L2 LINE L2 3168 3267 -5 1313 90 0 6 chr13 60024405 60024572 -41848597 + AluSc SINE Alu 129 294 -15 268 327 77 62 chr13 60025011 60025219 -41847950 - MIR SINE MIR -51 211 1 2335 113 0 0 chr13 60025396 60025706 -41847463 + AluSg SINE Alu 1 310 0 1298 194 97 35 chr13 60025780 60026120 -41847049 + MLT1A1 LTR MaLR 5 365 0 278 248 73 58 chr13 60026214 60026351 -41846818 - MIR SINE MIR -10 252 114 233 213 0 0 chr13 60027480 60027527 -41845642 - L2 LINE L2 -4 3309 3263 1507 197 30 10 chr13 60027669 60027787 -41845382 + AluJo SINE Alu 1 115 -197 279 0 0 0 chr13 60027787 60027818 -41845351 + (TA)n Simple_repeat Simple_repeat 1 31 0 1507 197 30 10 chr13 60027818 60027999 -41845170 + AluJo SINE Alu 115 306 -6 235 204 0 0 chr13 60029202 60029246 -41843923 - L2 LINE L2 0 3313 3270 1485 201 26 55 chr13 60029521 60029905 -41843264 - MLT1A2 LTR MaLR -1 466 1 1691 176 51 0 chr13 60030009 60030305 -41842864 - AluSx SINE Alu 0 312 2 1115 303 57 5 chr13 60030349 60030735 -41842434 - LTR16A LTR ERVL -9 441 36 2126 129 48 31 chr13 60030782 60031138 -41842031 + THE1B LTR MaLR 1 362 -2 11151 97 19 8 chr13 60031140 60032666 -41840503 + THE1B-int LTR MaLR 1 1543 -37 472 95 14 0 chr13 60032766 60032840 -41840329 + THE1B-int LTR MaLR 1506 1580 0 2165 122 51 20 chr13 60032840 60033193 -41839976 + THE1B LTR MaLR 1 364 0 333 198 0 25 chr13 60033233 60033314 -41839855 + HsTC2 DNA Tc2 6 84 -1814 1124 249 61 32 chr13 60033363 60033740 -41839429 + HsTC2 DNA Tc2 1276 1663 -235 3275 210 128 58 chr13 60033801 60035029 -41838140 - L1MCb LINE L1 -4363 2382 1241 7558 31 0 0 chr13 60035029 60036617 -41836552 - L1PA3 LINE L1 0 6155 4566 3275 210 128 58 chr13 60036617 60037493 -41835676 - L1MCb LINE L1 -5504 1241 427 195 42 0 0 chr13 60037493 60037517 -41835652 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 1977 133 0 18 chr13 60037519 60037805 -41835364 - AluSx SINE Alu -31 281 1 3275 210 128 58 chr13 60037805 60037856 -41835313 - L1MCb LINE L1 -6318 427 1 285 244 102 28 chr13 60037897 60038073 -41835096 + HsTC2 DNA Tc2 1708 1896 -2 198 333 0 86 chr13 60038091 60038196 -41834973 - L2 LINE L2 -632 2682 2587 8850 146 21 3 chr13 60038457 60040769 -41832400 + L1PA13 LINE L1 3815 6163 0 341 248 158 31 chr13 60040836 60041007 -41832162 + L1MC4 LINE L1 6542 6832 -1061 243 246 25 41 chr13 60041030 60041152 -41832017 + L1MC4 LINE L1 7033 7152 -890 1557 231 128 21 chr13 60041198 60041666 -41831503 - LTR40a LTR ERVL -1 518 1 431 243 87 81 chr13 60041667 60041992 -41831177 + L1MC5 LINE L1 7251 7495 -523 342 340 60 19 chr13 60042003 60042218 -41830951 + L1MC4 LINE L1 7558 7781 -261 194 382 25 76 chr13 60042287 60042525 -41830644 + L2 LINE L2 2992 3217 -55 204 363 97 23 chr13 60042759 60043109 -41830060 + L2 LINE L2 2139 2514 -800 1567 164 3 42 chr13 60043328 60043614 -41829555 - MER41B LTR ERV1 -360 275 1 1848 177 109 75 chr13 60044386 60044882 -41828287 + MLT2B1 LTR ERVL 6 518 -2 23 0 0 0 chr13 60044922 60044945 -41828224 + AT_rich Low_complexity Low_complexity 1 23 0 1756 125 14 4 chr13 60046082 60046363 -41826806 + L1PA16 LINE L1 2675 2958 -3891 3740 211 10 4 chr13 60046367 60047155 -41826014 + L1PA16 LINE L1 4044 4836 -2013 434 102 0 0 chr13 60047158 60047217 -41825952 + MSTA LTR MaLR 1 59 -369 4652 127 7 28 chr13 60047221 60048075 -41825094 + L1PA16 LINE L1 5868 6706 -163 672 157 0 0 chr13 60048075 60048190 -41824979 - L1PA16 LINE L1 -172 6697 6583 944 111 56 0 chr13 60048196 60048340 -41824829 + L1PA16 LINE L1 6709 6860 -9 278 264 23 11 chr13 60048353 60048440 -41824729 - MER103 DNA DNA -43 123 36 21 57 0 0 chr13 60048893 60048928 -41824241 + AT_rich Low_complexity Low_complexity 1 35 0 1275 220 64 32 chr13 60049235 60049717 -41823452 + MLT1E LTR MaLR 1 593 0 5459 163 18 10 chr13 60049936 60051380 -41821789 + L1PB4 LINE L1 4707 6153 -3 2301 184 16 77 chr13 60051684 60051891 -41821278 + MLT2B1 LTR ERVL 1 219 -301 2574 101 81 8 chr13 60051891 60052288 -41820881 - MSTA LTR MaLR 0 428 3 2301 184 16 77 chr13 60052288 60052585 -41820584 + MLT2B1 LTR ERVL 219 474 -46 269 121 0 52 chr13 60052637 60052695 -41820474 + MLT2C2 LTR ERVL 415 464 0 309 285 116 19 chr13 60054895 60055035 -41818134 + MIR SINE MIR 50 214 -48 719 211 102 0 chr13 60055035 60055201 -41817968 - MER5A DNA MER1_type -2 187 5 309 285 116 19 chr13 60055201 60055256 -41817913 + MIR SINE MIR 214 262 0 265 349 197 0 chr13 60057142 60057274 -41815895 + MER5A DNA MER1_type 26 183 -6 240 247 95 91 chr13 60058262 60058505 -41814664 + L1MEd LINE L1 1353 1596 -4934 357 284 29 10 chr13 60058827 60059065 -41814104 + L1MEd LINE L1 1858 2035 -4505 272 272 29 29 chr13 60059070 60059173 -41813996 + L1MEd LINE L1 2183 2285 -4436 14097 170 22 34 chr13 60059347 60059810 -41813359 + L1MEd LINE L1 2696 3163 -3534 2244 115 0 0 chr13 60059810 60060106 -41813063 + AluSx SINE Alu 1 296 -16 1987 158 3 7 chr13 60060116 60060420 -41812749 + AluSx SINE Alu 1 303 -9 14097 170 22 34 chr13 60060420 60062029 -41811140 + L1MEd LINE L1 3172 4799 -1898 1966 144 23 16 chr13 60062029 60062335 -41810834 + AluSx SINE Alu 1 308 -4 14097 170 22 34 chr13 60062335 60064254 -41808915 + L1MEd LINE L1 4799 6651 -46 2240 291 47 16 chr13 60064280 60065370 -41807799 + L1M4 LINE L1 2138 3260 -2886 359 175 9 44 chr13 60065375 60065417 -41807752 + GA-rich Low_complexity Low_complexity 2 44 -67 2232 117 3 3 chr13 60065417 60065726 -41807443 + AluSp SINE Alu 1 309 -4 359 175 9 44 chr13 60065726 60065797 -41807372 + GA-rich Low_complexity Low_complexity 44 111 0 274 279 87 37 chr13 60065810 60066132 -41807037 + L1M4 LINE L1 3254 3591 -2555 * 1202 258 106 44 chr13 60066117 60066549 -41806620 + L1M4 LINE L1 3832 4329 -1817 1909 93 12 0 chr13 60066549 60066797 -41806372 + AluY SINE Alu 39 289 -22 1202 258 106 44 chr13 60066797 60067094 -41806075 + L1M4 LINE L1 4329 4606 -1540 1392 182 34 83 chr13 60067154 60067538 -41805631 - MLT1A1 LTR MaLR 0 365 1 1006 274 48 43 chr13 60067538 60067954 -41805215 - LTR16A LTR ERVL -8 442 25 336 257 156 0 chr13 60067976 60068085 -41805084 - MIR SINE MIR -51 211 86 4974 46 8 2 chr13 60068319 60068927 -41804242 - L1PA7 LINE L1 -1 6153 5542 225 210 136 0 chr13 60069363 60069444 -41803725 - L1MA10 LINE L1 -2 6332 6241 212 194 0 0 chr13 60069449 60069485 -41803684 + (TA)n Simple_repeat Simple_repeat 2 37 0 261 238 0 24 chr13 60069485 60069569 -41803600 - L1MA10 LINE L1 -81 6253 6172 1010 236 106 18 chr13 60069623 60069953 -41803216 - L1ME1 LINE L1 -306 5860 5502 948 364 60 12 chr13 60071786 60072305 -41800864 - L3 LINE CR1 -476 1101 558 758 256 14 42 chr13 60072318 60072533 -41800636 + MER58A DNA MER1_type 9 217 -7 265 290 167 37 chr13 60072558 60072720 -41800449 - L3 LINE CR1 -1037 540 358 204 158 0 0 chr13 60073134 60073172 -41799997 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 259 314 92 94 chr13 60073931 60074345 -41798824 + L2 LINE L2 2838 3250 -22 198 382 0 0 chr13 60074867 60074935 -41798234 + MIR SINE MIR 32 99 -109 248 285 89 75 chr13 60074969 60075183 -41797986 - MIR SINE MIR -38 224 8 * 434 332 46 14 chr13 60075136 60075353 -41797816 + MIR SINE MIR 37 260 -2 228 222 56 0 chr13 60075532 60075586 -41797583 + MIR3 SINE MIR 100 156 -52 212 261 0 0 chr13 60077161 60077207 -41795962 + MIR SINE MIR 216 261 -1 2116 124 17 0 chr13 60078474 60078794 -41794375 + AluSx SINE Alu 1 325 0 24 32 0 0 chr13 60079783 60079814 -41793355 + AT_rich Low_complexity Low_complexity 1 31 0 279 0 0 0 chr13 60080840 60080871 -41792298 + (CA)n Simple_repeat Simple_repeat 2 32 0 419 269 43 27 chr13 60081018 60081275 -41791894 - HAL1 LINE L1 -290 2217 1957 1819 174 0 10 chr13 60081291 60081585 -41791584 + AluSx SINE Alu 1 291 -21 1576 222 99 6 chr13 60081693 60082045 -41791124 + MSTD LTR MaLR 1 385 -11 3341 234 78 71 chr13 60082049 60082289 -41790880 + L1MB7 LINE L1 321 558 -6086 10881 29 0 0 chr13 60082289 60084367 -41788802 + L1PA3 LINE L1 4075 6149 -6 3341 234 78 71 chr13 60084367 60084849 -41788320 + L1MB7 LINE L1 558 1035 -5609 1576 200 0 10 chr13 60084849 60085144 -41788025 - AluJb SINE Alu -11 301 10 3341 234 78 71 chr13 60085144 60086643 -41786526 + L1MB7 LINE L1 1035 2839 -3805 966 200 12 0 chr13 60086650 60086820 -41786349 + AluJb SINE Alu 107 278 -34 594 159 0 0 chr13 60086859 60086966 -41786203 + GA-rich Low_complexity Low_complexity 3 109 0 6023 274 85 20 chr13 60086968 60089605 -41783564 + L1MB7 LINE L1 2878 5687 -957 665 200 0 0 chr13 60089617 60089732 -41783437 + FLAM_C SINE Alu 7 121 -22 25 0 0 0 chr13 60089732 60089757 -41783412 + AT_rich Low_complexity Low_complexity 1 25 0 781 182 67 0 chr13 60089757 60089922 -41783247 + L1MB7 LINE L1 5689 5864 -780 2884 181 44 5 chr13 60089925 60090540 -41782629 + L1MB7 LINE L1 6025 6663 -19 199 337 119 45 chr13 60091140 60091383 -41781786 + L2 LINE L2 2618 2878 -436 1964 157 102 29 chr13 60091850 60092263 -41780906 + MER65A LTR ERV1 1 443 -2 231 347 84 0 chr13 60092506 60092601 -41780568 + L2 LINE L2 3134 3236 -36 241 242 137 11 chr13 60093024 60093119 -41780050 - MIR SINE MIR -72 190 84 458 308 25 30 chr13 60095135 60095333 -41777836 - MIR SINE MIR -63 199 3 661 314 5 49 chr13 60095628 60095641 -41777528 + MIR SINE MIR 16 28 -234 2032 139 7 0 chr13 60095641 60095935 -41777234 + AluSg SINE Alu 1 296 -14 661 314 5 49 chr13 60095935 60096144 -41777025 + MIR SINE MIR 28 228 -34 1491 192 15 22 chr13 60096231 60096444 -41776725 + AluJo SINE Alu 14 226 -86 2005 134 49 25 chr13 60096444 60096810 -41776359 + THE1C LTR MaLR 1 375 0 1491 192 15 22 chr13 60096810 60096867 -41776302 + AluJo SINE Alu 226 282 -30 23 33 0 0 chr13 60096870 60096900 -41776269 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr13 60096958 60096990 -41776179 + AT_rich Low_complexity Low_complexity 1 32 0 784 154 0 68 chr13 60098186 60098348 -41774821 + FRAM SINE Alu 18 168 -8 217 259 17 0 chr13 60098418 60098476 -41774693 + CT-rich Low_complexity Low_complexity 2 60 0 1501 240 91 40 chr13 60098986 60099014 -41774155 + L1MC4 LINE L1 6475 6500 -1542 180 0 0 0 chr13 60099014 60099034 -41774135 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1501 240 91 40 chr13 60099034 60099434 -41773735 + L1MC4 LINE L1 6500 6878 -1164 2254 143 22 0 chr13 60099434 60099790 -41773379 - THE1B LTR MaLR 0 364 1 1501 240 91 40 chr13 60099790 60100514 -41772655 + L1MC4 LINE L1 6878 7845 -197 21 36 0 0 chr13 60100795 60100823 -41772346 + AT_rich Low_complexity Low_complexity 1 28 0 332 343 84 12 chr13 60101004 60101170 -41771999 + MIR SINE MIR 20 197 -65 640 288 92 25 chr13 60101929 60102169 -41771000 + MIR SINE MIR 7 262 0 21 89 0 0 chr13 60102409 60102465 -41770704 + AT_rich Low_complexity Low_complexity 1 56 0 1513 157 14 32 chr13 60102962 60103337 -41769832 + Tigger2a DNA MER2_type 1 444 0 2250 177 29 10 chr13 60103477 60103895 -41769274 - MSTB LTR MaLR 0 426 1 197 81 0 27 chr13 60104217 60104254 -41768915 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 436 254 0 65 chr13 60104273 60104411 -41768758 - MIR SINE MIR -13 249 121 205 306 14 0 chr13 60104700 60104772 -41768397 + CT-rich Low_complexity Low_complexity 1 73 0 192 324 37 28 chr13 60105574 60105682 -41767487 + L2 LINE L2 3162 3270 -2 453 252 0 0 chr13 60106844 60106947 -41766222 - MER5B DNA MER1_type 0 178 76 1822 137 30 27 chr13 60107230 60107530 -41765639 - AluSx SINE Alu -11 301 1 1108 294 129 32 chr13 60107953 60109152 -41764017 + L1M4 LINE L1 3780 5094 -1052 1917 262 114 23 chr13 60109181 60110268 -41762901 + L1ME LINE L1 3895 5161 -985 479 332 36 15 chr13 60110269 60110543 -41762626 + L1ME LINE L1 5112 5391 -755 5809 95 33 7 chr13 60110543 60111834 -41761335 + L1PA13 LINE L1 4846 6151 -12 252 295 83 18 chr13 60112023 60112225 -41760944 + L1MA6 LINE L1 5734 5947 -219 917 47 0 0 chr13 60112332 60112439 -41760730 + U6 snRNA snRNA 1 107 0 4265 192 12 6 chr13 60112441 60113344 -41759825 + L1PA8A LINE L1 1189 2097 -4049 18493 118 25 9 chr13 60113344 60117062 -41756107 + L1PA8A LINE L1 2429 6131 0 239 284 108 77 chr13 60117326 60117520 -41755649 + MIR SINE MIR 20 219 -43 353 317 97 27 chr13 60117695 60117881 -41755288 - MIR SINE MIR -15 247 49 820 119 11 28 chr13 60118334 60118510 -41754659 + (GGAA)n Simple_repeat Simple_repeat 4 176 0 2097 127 0 22 chr13 60118773 60119087 -41754082 + AluSx SINE Alu 3 309 -3 528 289 80 35 chr13 60119088 60119289 -41753880 + MIR SINE MIR 21 230 -32 25 75 0 0 chr13 60119591 60119644 -41753525 + AT_rich Low_complexity Low_complexity 1 53 0 277 361 36 0 chr13 60120606 60120689 -41752480 - L3 LINE CR1 -122 1455 1370 25 83 0 0 chr13 60120883 60120943 -41752226 + AT_rich Low_complexity Low_complexity 1 60 0 359 316 0 0 chr13 60121074 60121191 -41751978 + L1ME LINE L1 5547 5663 -458 23 42 0 21 chr13 60121216 60121242 -41751927 + AT_rich Low_complexity Low_complexity 1 27 -20 2221 105 3 0 chr13 60121242 60121537 -41751632 + AluSx SINE Alu 1 296 -16 23 42 0 21 chr13 60121537 60121558 -41751611 + AT_rich Low_complexity Low_complexity 27 47 0 1511 149 152 7 chr13 60122431 60122727 -41750442 + MER44D DNA MER2_type 1 609 0 329 293 21 14 chr13 60123262 60123402 -41749767 + GA-rich Low_complexity Low_complexity 3 143 0 830 212 117 0 chr13 60123560 60123739 -41749430 - MER58A DNA MER1_type -11 213 14 22 35 0 0 chr13 60124577 60124606 -41748563 + AT_rich Low_complexity Low_complexity 1 29 0 1290 191 89 13 chr13 60124614 60124850 -41748319 + AluJb SINE Alu 4 257 -55 240 259 103 9 chr13 60124890 60125006 -41748163 + L1ME3A LINE L1 21 147 -5972 882 288 38 17 chr13 60125100 60125392 -41747777 + LTR16B LTR ERVL 167 464 0 1459 6 0 39 chr13 60125419 60125598 -41747571 + L1HS LINE L1 5984 6155 0 3377 303 50 29 chr13 60125641 60127063 -41746106 + HERV16 LTR ERVL 38 1489 -3507 355 297 48 6 chr13 60127079 60127248 -41745921 + HERV16 LTR ERVL 2288 2433 -2590 779 297 9 22 chr13 60127305 60127534 -41745635 + HERV16 LTR ERVL 2693 2920 -2103 1457 271 114 54 chr13 60127639 60128722 -41744447 + L1ME3A LINE L1 3797 4944 -1185 1607 242 97 75 chr13 60128738 60129815 -41743354 + L1ME3A LINE L1 5019 6132 -21 21 36 0 0 chr13 60129829 60129857 -41743312 + AT_rich Low_complexity Low_complexity 1 28 0 676 183 0 0 chr13 60130027 60130171 -41742998 - AluSg/x SINE Alu 0 311 168 25 0 0 0 chr13 60130640 60130665 -41742504 + AT_rich Low_complexity Low_complexity 1 25 0 805 266 101 0 chr13 60131810 60132028 -41741141 - MIR SINE MIR 0 262 23 374 270 126 58 chr13 60134764 60134938 -41738231 - L2 LINE L2 -33 3280 3095 226 213 0 0 chr13 60135508 60135555 -41737614 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 146 0 73 chr13 60135925 60135966 -41737203 - L2 LINE L2 -78 3235 3198 307 318 13 13 chr13 60136025 60136176 -41736993 - LTR33 LTR ERVL 0 521 371 1836 210 26 52 chr13 60136187 60136695 -41736474 - MLT1D LTR MaLR -12 472 1 808 279 128 16 chr13 60136695 60136996 -41736173 - LTR33 LTR ERVL -184 337 3 863 211 66 33 chr13 60137291 60137504 -41735665 - MER46A DNA MER2_type -16 220 1 21 0 0 0 chr13 60137914 60137935 -41735234 + AT_rich Low_complexity Low_complexity 1 21 0 3858 138 3 34 chr13 60138218 60138840 -41734329 - LTR26 LTR ERV1 0 603 1 28 71 0 0 chr13 60140568 60140624 -41732545 + AT_rich Low_complexity Low_complexity 1 56 0 1276 235 35 159 chr13 60141520 60142308 -41730861 - LTR8 LTR ERV1 0 691 1 347 301 51 31 chr13 60142866 60143062 -41730107 + L1M4 LINE L1 3090 3289 -2857 1164 294 80 11 chr13 60143567 60144090 -41729079 - L1ME4a LINE L1 -81 6040 5482 661 320 138 21 chr13 60144166 60144744 -41728425 - L2 LINE L2 -1 3312 2670 664 285 96 11 chr13 60144787 60145047 -41728122 - L2 LINE L2 -896 2418 2137 1770 134 0 90 chr13 60147196 60147517 -41725652 + AluJb SINE Alu 1 292 -20 399 236 11 0 chr13 60147686 60147775 -41725394 - MER81 DNA DNA -3 111 22 335 360 55 18 chr13 60149861 60150025 -41723144 + L2 LINE L2 3103 3272 0 22 35 0 0 chr13 60150341 60150370 -41722799 + AT_rich Low_complexity Low_complexity 1 29 0 251 289 190 35 chr13 60151645 60151787 -41721382 + L2 LINE L2 1 164 -3150 1357 255 107 31 chr13 60151787 60152368 -41720801 + L2 LINE L2 1286 1910 -1404 206 333 0 43 chr13 60153844 60153937 -41719232 - MIR3 SINE MIR -10 198 110 243 337 0 0 chr13 60153988 60154074 -41719095 - LTR16A1 LTR ERVL -2 455 370 2655 102 3 3 chr13 60154546 60154910 -41718259 + THE1B LTR MaLR 1 364 0 1891 162 36 39 chr13 60155270 60155577 -41717592 - L1MC2 LINE L1 -10 6334 6027 1761 88 0 0 chr13 60155577 60155793 -41717376 + AluSg/x SINE Alu 89 304 -8 1891 162 36 39 chr13 60155793 60155898 -41717271 - L1MC2 LINE L1 -317 6027 5923 2495 154 29 0 chr13 60158433 60158849 -41714320 - MSTA LTR MaLR 0 428 1 1796 251 70 26 chr13 60159096 60159657 -41713512 + MLT1E LTR MaLR 9 593 0 541 279 134 21 chr13 60160239 60160522 -41712647 - MLT1L LTR MaLR -148 467 153 5954 121 1 4 chr13 60160910 60162231 -41710938 + L1PA15 LINE L1 4844 6159 -6 323 322 128 7 chr13 60162468 60162617 -41710552 + MIR SINE MIR 3 169 -93 4324 78 0 0 chr13 60162788 60163342 -41709827 - MER41A LTR ERV1 0 554 1 1556 175 45 45 chr13 60164676 60165013 -41708156 + MER1B DNA MER1_type 1 337 0 1930 151 20 9 chr13 60165013 60165349 -41707820 + L1MA2 LINE L1 5962 6304 0 279 256 274 48 chr13 60167657 60168051 -41705118 - L2 LINE L2 -5 3308 2826 1529 181 75 43 chr13 60168154 60168530 -41704639 + MLT1B LTR MaLR 3 390 0 231 316 0 13 chr13 60168608 60168687 -41704482 - MIR3 SINE MIR -6 202 125 2237 95 0 0 chr13 60169319 60169602 -41703567 - AluSc SINE Alu -26 283 1 25 0 0 0 chr13 60169605 60169630 -41703539 + AT_rich Low_complexity Low_complexity 1 25 0 185 367 0 76 chr13 60169745 60169824 -41703345 + MIR SINE MIR 1 73 -189 196 356 42 58 chr13 60170067 60170258 -41702911 + MIR SINE MIR 1 188 -74 1911 120 0 26 chr13 60170264 60170530 -41702639 + AluSx SINE Alu 1 259 -53 406 232 77 77 chr13 60170684 60170865 -41702304 - LTR50 LTR ERVL -592 203 23 2144 102 3 3 chr13 60171143 60171472 -41701697 - AluSx SINE Alu 0 329 1 28 61 0 0 chr13 60172106 60172155 -41701014 + AT_rich Low_complexity Low_complexity 1 49 0 1082 167 87 15 chr13 60172484 60172883 -41700286 - MER31B LTR ERV1 0 466 3 386 279 30 30 chr13 60173595 60173760 -41699409 - MER103 DNA DNA -1 165 1 285 293 43 43 chr13 60174718 60174834 -41698335 + L2 LINE L2 3197 3312 -1 189 147 0 0 chr13 60175378 60175412 -41697757 + (CA)n Simple_repeat Simple_repeat 2 35 0 5444 63 4 0 chr13 60177734 60178421 -41694748 - L1PA7 LINE L1 -6 6148 5459 228 302 31 31 chr13 60178425 60178521 -41694648 - MIR3 SINE MIR -102 106 11 1123 184 13 34 chr13 60178714 60178953 -41694216 + MLT1D LTR MaLR 1 234 -271 * 1291 190 12 88 chr13 60178943 60179285 -41693884 + MLT1D LTR MaLR 190 505 0 189 138 138 46 chr13 60179387 60179452 -41693717 - L2 LINE L2 -1595 1719 1649 * 216 232 30 111 chr13 60179414 60179513 -41693656 - MIR SINE MIR 0 262 172 453 244 0 113 chr13 60179513 60179595 -41693574 + MIR SINE MIR 94 151 -111 2210 214 53 28 chr13 60179595 60180123 -41693046 + MLT1F LTR MaLR 1 541 -1 453 244 0 113 chr13 60180123 60180200 -41692969 + MIR SINE MIR 151 235 -27 186 103 0 0 chr13 60181849 60181878 -41691291 + (TG)n Simple_repeat Simple_repeat 1 29 0 228 135 0 0 chr13 60182107 60182144 -41691025 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 259 253 20 50 chr13 60182295 60182394 -41690775 - L2 LINE L2 -1003 2311 2216 251 279 77 15 chr13 60182492 60182614 -41690555 - MIR SINE MIR -69 139 6 234 0 0 0 chr13 60182988 60183014 -41690155 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2240 88 0 7 chr13 60183014 60183297 -41689872 - AluSq SINE Alu -32 281 1 449 285 7 130 chr13 60183825 60184095 -41689074 - MIR SINE MIR -14 248 12 191 362 16 8 chr13 60184086 60184213 -41688956 - MIR SINE MIR -2 260 133 * 288 221 66 8 chr13 60184526 60184648 -41688521 - L1ME4a LINE L1 -33 6088 5960 1400 347 96 9 chr13 60184839 60185649 -41687520 + L2 LINE L2 2035 2915 -399 798 187 27 0 chr13 60185703 60185853 -41687316 + L1MD2 LINE L1 142 295 -6248 342 96 0 0 chr13 60185854 60185906 -41687263 + LTR26 LTR ERV1 1 52 -551 4315 69 35 16 chr13 60185906 60187008 -41686161 + MER11A LTR ERVK 1 1266 0 3108 151 37 0 chr13 60187008 60187545 -41685624 + LTR26 LTR ERV1 47 603 0 1336 270 65 27 chr13 60187545 60188189 -41684980 + L1MD2 LINE L1 293 1072 -5471 950 204 60 63 chr13 60188189 60188474 -41684695 - MLT1D LTR MaLR -194 311 28 577 226 31 10 chr13 60188500 60188695 -41684474 + L1MD2 LINE L1 2300 2498 -4042 * 893 233 4 4 chr13 60188686 60188931 -41684238 + L1MD2 LINE L1 2879 3123 -3417 455 91 78 0 chr13 60188931 60189008 -41684161 + LTR26B LTR ERV1 1 83 -448 4087 150 15 17 chr13 60189008 60189720 -41683449 - MER50 LTR ERV1 -23 711 1 2629 125 53 5 chr13 60189720 60190152 -41683017 + LTR26B LTR ERV1 79 531 0 310 229 125 14 chr13 60190152 60190296 -41682873 + L1MD2 LINE L1 3120 3279 -3261 363 222 58 0 chr13 60190316 60190487 -41682682 + L1MD2 LINE L1 3478 3658 -2882 363 319 48 11 chr13 60190527 60190715 -41682454 + L1MD2 LINE L1 3647 3841 -2699 1258 248 33 47 chr13 60190717 60191229 -41681940 + L1MD2 LINE L1 4053 4557 -1983 256 253 0 61 chr13 60191233 60191332 -41681837 + L1MD2 LINE L1 5033 5125 -1415 344 200 25 38 chr13 60191332 60191412 -41681757 + MLT1D LTR MaLR 1 79 -426 1880 161 60 34 chr13 60191421 60191953 -41681216 - MLT2A2 LTR ERVL -5 549 1 955 249 128 18 chr13 60191969 60192367 -41680802 + MLT1D LTR MaLR 64 505 0 1884 202 79 25 chr13 60192369 60193373 -41679796 + L1MD2 LINE L1 5124 6173 -580 2442 86 0 0 chr13 60193374 60193678 -41679491 + AluSp SINE Alu 1 304 -9 1955 168 36 39 chr13 60193720 60194271 -41678898 + MLT2A2 LTR ERVL 1 554 0 1108 174 4 50 chr13 60194271 60194529 -41678640 + L1MD2 LINE L1 6187 6432 -321 527 169 0 0 chr13 60195004 60195093 -41678076 - AluJ/FRAM SINE Alu -5 307 219 1926 176 3 0 chr13 60195551 60195852 -41677317 - AluSx SINE Alu -10 302 1 397 272 149 67 chr13 60195920 60196369 -41676800 - L1ME LINE L1 -320 5801 5316 1833 185 3 0 chr13 60196931 60197239 -41675930 - AluJo SINE Alu -3 309 1 513 287 120 23 chr13 60199708 60199966 -41673203 + Charlie2 DNA MER1_type 13 295 -2567 1100 262 82 26 chr13 60200019 60200443 -41672726 + Charlie2b DNA MER1_type 820 1267 -1515 199 111 22 22 chr13 60200471 60200516 -41672653 + GA-rich Low_complexity Low_complexity 2 46 0 27 29 0 0 chr13 60201424 60201458 -41671711 + AT_rich Low_complexity Low_complexity 1 34 0 567 309 119 26 chr13 60201667 60201978 -41671191 - L2 LINE L2 -1216 2098 1759 547 335 68 43 chr13 60202153 60202189 -41670980 - L2 LINE L2 -1568 1746 1712 1848 156 0 22 chr13 60202189 60202503 -41670666 - AluJo SINE Alu -5 307 1 547 335 68 43 chr13 60202503 60203021 -41670148 - L2 LINE L2 -1602 1712 1178 462 297 42 12 chr13 60203199 60203364 -41669805 - MIR SINE MIR -65 197 28 203 240 94 73 chr13 60203785 60203881 -41669288 + MER91C DNA MER1_type 9 106 -34 799 265 65 62 chr13 60204250 60204541 -41668628 + MLT1J LTR MaLR 71 362 -149 185 255 20 0 chr13 60205048 60205099 -41668070 + L2 LINE L2 3261 3312 -1 567 289 120 52 chr13 60205177 60205578 -41667591 + MLT1J LTR MaLR 36 463 -48 1836 172 7 13 chr13 60205843 60206146 -41667023 - AluJo SINE Alu -6 306 6 2328 147 108 3 chr13 60206660 60207047 -41666122 - MSTA LTR MaLR 0 428 1 10106 162 30 4 chr13 60207050 60208657 -41664512 - MSTA-int LTR MaLR -3 1648 1 2770 141 29 5 chr13 60208657 60209075 -41664094 - MSTA LTR MaLR 0 428 1 382 309 33 29 chr13 60209484 60209778 -41663391 + L1MEc LINE L1 2170 2423 -3792 235 229 0 0 chr13 60210775 60210823 -41662346 + L2 LINE L2 2238 2285 -1029 1519 191 4 7 chr13 60210825 60211162 -41662007 + AluJo SINE Alu 40 375 0 254 302 93 17 chr13 60211166 60211338 -41661831 + L2 LINE L2 2303 2487 -827 271 83 0 0 chr13 60211340 60211376 -41661793 + MSTC LTR MaLR 1 36 -392 * 761 125 25 0 chr13 60211374 60211494 -41661675 + MSTC LTR MaLR 306 428 0 480 324 86 5 chr13 60211509 60211719 -41661450 + L2 LINE L2 2514 2740 -574 357 68 0 0 chr13 60211722 60211766 -41661403 + Tigger1 DNA MER2_type 1812 1855 -563 * 11709 129 24 5 chr13 60211762 60213553 -41659616 - Tigger1 DNA MER2_type -592 1826 1 331 352 28 7 chr13 60213630 60213772 -41659397 + L2 LINE L2 3161 3305 -8 1215 249 25 128 chr13 60213901 60214411 -41658758 + L1ME1 LINE L1 5702 6162 -3 6138 94 8 1 chr13 60214566 60215399 -41657770 + L1PA10 LINE L1 5316 6158 -10 21 0 0 0 chr13 60216001 60216022 -41657147 + AT_rich Low_complexity Low_complexity 1 21 0 341 253 47 77 chr13 60216322 60216492 -41656677 + MER103 DNA DNA 2 166 0 450 306 135 0 chr13 60217138 60217308 -41655861 + MER91A DNA MER1_type 1 193 -3 22 0 0 0 chr13 60217892 60217914 -41655255 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 60219148 60219170 -41653999 + AT_rich Low_complexity Low_complexity 1 22 0 286 293 30 24 chr13 60219394 60219561 -41653608 - L1MC4a LINE L1 -1838 5970 5803 306 0 0 0 chr13 60221050 60221084 -41652085 + (CA)n Simple_repeat Simple_repeat 1 34 0 1836 138 0 4 chr13 60221330 60221598 -41651571 + AluSx SINE Alu 33 299 -13 193 277 15 31 chr13 60221933 60221998 -41651171 + L2 LINE L2 3201 3264 -8 182 83 56 0 chr13 60222125 60222161 -41651008 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 282 56 0 0 chr13 60222215 60222251 -41650918 + (TA)n Simple_repeat Simple_repeat 2 37 0 2988 123 21 5 chr13 60224536 60224957 -41648212 - MSTA LTR MaLR 0 428 1 476 279 258 0 chr13 60225941 60226131 -41647038 - MIR SINE MIR -5 257 19 194 294 59 0 chr13 60226178 60226229 -41646940 - L3 LINE CR1 -1180 397 344 794 159 85 17 chr13 60227472 60227648 -41645521 + MER53 DNA DNA 1 188 -1 1555 120 4 37 chr13 60227826 60228067 -41645102 - AluSg/x SINE Alu -15 297 65 1936 176 45 21 chr13 60228108 60228489 -41644680 + MLT1B LTR MaLR 1 390 0 946 200 44 19 chr13 60228708 60228913 -41644256 - MER63A DNA MER1_type 0 210 1 700 199 63 73 chr13 60228980 60229011 -41644158 + MER5A DNA MER1_type 1 31 -158 2158 131 20 23 chr13 60229011 60229355 -41643814 + MER61A LTR ERV1 1 343 0 700 199 63 73 chr13 60229355 60229514 -41643655 + MER5A DNA MER1_type 31 189 0 479 276 164 7 chr13 60229526 60229678 -41643491 - MER5A DNA MER1_type -5 184 9 678 245 58 48 chr13 60229797 60230005 -41643164 + MER63A DNA MER1_type 1 210 0 182 306 0 0 chr13 60230268 60230317 -41642852 - L2 LINE L2 -1 3312 3264 2029 121 0 0 chr13 60230336 60230608 -41642561 - AluSx SINE Alu -40 272 1 358 270 54 9 chr13 60230728 60230839 -41642330 + L2 LINE L2 3189 3304 -9 378 0 0 0 chr13 60231418 60231460 -41641709 + (CA)n Simple_repeat Simple_repeat 2 43 0 908 227 81 96 chr13 60231632 60232067 -41641102 + MLT1B LTR MaLR 1 390 0 1991 94 0 4 chr13 60232485 60232740 -41640429 - AluSq SINE Alu -44 269 16 29 47 0 0 chr13 60233950 60233993 -41639176 + AT_rich Low_complexity Low_complexity 1 43 0 2130 165 43 0 chr13 60234419 60234765 -41638404 + MLT1A1 LTR MaLR 1 361 -4 223 329 109 14 chr13 60234926 60235136 -41638033 + L2 LINE L2 2822 3051 -221 2238 107 0 3 chr13 60235267 60235565 -41637604 + AluSg SINE Alu 1 297 -13 1125 183 97 93 chr13 60235568 60236075 -41637094 + L1MC5 LINE L1 7199 7707 -254 716 208 128 37 chr13 60236256 60236578 -41636591 - LTR37B LTR ERV1 0 464 111 976 164 11 6 chr13 60236681 60236858 -41636311 - MER20 DNA MER1_type 0 219 42 2397 75 3 3 chr13 60236993 60237301 -41635868 - AluY SINE Alu -1 310 3 180 0 0 0 chr13 60237669 60237689 -41635480 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4471 64 2 0 chr13 60237694 60238224 -41634945 - L1PA7 LINE L1 -15 6139 5609 1894 90 27 8 chr13 60239231 60239487 -41633682 - L1PA10 LINE L1 -4 6164 5904 1285 310 168 17 chr13 60239487 60240411 -41632758 - L2 LINE L2 -41 3272 2199 445 181 12 0 chr13 60240441 60240524 -41632645 + Charlie5 DNA MER1_type 1205 1288 -1324 806 210 97 29 chr13 60243335 60243858 -41629311 - L1MDa LINE L1 -3634 2906 2348 279 0 0 0 chr13 60243882 60243913 -41629256 + (TTA)n Simple_repeat Simple_repeat 3 33 0 36093 37 1 2 chr13 60243913 60250058 -41623111 - L1PA4 LINE L1 -18 6137 2 1853 201 12 2 chr13 60250061 60250469 -41622700 + Charlie5 DNA MER1_type 1267 1678 -934 1335 196 74 20 chr13 60250469 60250547 -41622622 + MER93b LTR ERV1 3 75 -298 2191 89 3 3 chr13 60250547 60250840 -41622329 + AluY SINE Alu 1 293 -18 1335 196 74 20 chr13 60250840 60251113 -41622056 + MER93b LTR ERV1 75 373 0 * 3966 159 54 19 chr13 60251113 60251916 -41621253 + Charlie5 DNA MER1_type 1671 2443 -181 204 40 0 0 chr13 60251916 60251941 -41621228 + (TA)n Simple_repeat Simple_repeat 2 26 0 2040 114 4 7 chr13 60251942 60252222 -41620947 - AluSx SINE Alu -33 279 1 3966 159 54 19 chr13 60252222 60252302 -41620867 + Charlie5 DNA MER1_type 2442 2588 -36 269 229 0 16 chr13 60253702 60253763 -41619406 + MIR3 SINE MIR 149 208 0 1495 157 16 16 chr13 60254294 60254542 -41618627 - AluJo SINE Alu 0 312 65 195 188 0 42 chr13 60256232 60256280 -41616889 + L2 LINE L2 3252 3297 -16 334 319 206 0 chr13 60256653 60256794 -41616375 - L2 LINE L2 -1 3271 3102 806 196 0 0 chr13 60257447 60257580 -41615589 - FLAM_A SINE Alu 0 133 1 470 264 19 104 chr13 60258432 60258644 -41614525 - MIR SINE MIR -50 212 19 474 224 145 9 chr13 60258754 60258906 -41614263 + MER5B DNA MER1_type 1 163 -15 298 261 115 51 chr13 60258917 60259074 -41614095 - MER5B DNA MER1_type -6 172 6 1022 225 32 47 chr13 60259082 60259263 -41613906 + MIR SINE MIR 12 189 -73 789 200 43 27 chr13 60259263 60259448 -41613721 + MER5A DNA MER1_type 1 188 -1 1022 225 32 47 chr13 60259448 60259519 -41613650 + MIR SINE MIR 189 260 -2 355 323 43 80 chr13 60259991 60260406 -41612763 - L2 LINE L2 -15 3298 2899 689 336 46 24 chr13 60260624 60260996 -41612173 + L3b LINE CR1 1117 1496 -87 1122 215 164 93 chr13 60261773 60262470 -41610699 + LTR41 LTR ERVL 29 523 0 571 293 55 6 chr13 60262490 60262654 -41610515 - MER69A DNA AcHobo -1 176 5 2271 82 0 20 chr13 60263509 60263801 -41609368 + AluSx SINE Alu 3 288 -24 1040 126 7 0 chr13 60263812 60264003 -41609166 + AluSg/x SINE Alu 131 322 0 957 197 161 45 chr13 60264080 60264415 -41608754 + MLT1A2 LTR MaLR 1 374 0 1994 134 7 0 chr13 60264592 60264898 -41608271 - AluSq SINE Alu 0 308 1 397 294 160 37 chr13 60265779 60265966 -41607203 + MIR SINE MIR 1 210 -52 186 43 0 0 chr13 60265998 60266021 -41607148 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2215 97 0 3 chr13 60266031 60266319 -41606850 - AluSg SINE Alu -23 287 1 1351 181 156 3 chr13 60267286 60267601 -41605568 - MLT1A1 LTR MaLR -2 363 1 2161 120 0 7 chr13 60268779 60269079 -41604090 - AluSx SINE Alu -14 298 1 26 0 0 0 chr13 60269079 60269105 -41604064 + AT_rich Low_complexity Low_complexity 1 26 0 376 250 11 22 chr13 60269216 60269308 -41603861 + L2 LINE L2 3222 3312 -1 1755 173 10 3 chr13 60269819 60270119 -41603050 - AluJb SINE Alu -10 302 1 298 229 57 87 chr13 60270392 60270452 -41602717 - MIR SINE MIR -25 183 123 2248 109 0 20 chr13 60270452 60270755 -41602414 + AluSx SINE Alu 1 297 -15 298 229 57 87 chr13 60270755 60270862 -41602307 - MIR SINE MIR -85 123 12 2552 177 15 26 chr13 60271009 60271620 -41601549 + pTR5 LTR ERV1 743 1346 -1092 4001 132 34 101 chr13 60271634 60272515 -41600654 + LTR12 LTR ERV1 5 826 0 1966 142 6 28 chr13 60272872 60273189 -41599980 - AluSq SINE Alu -3 310 1 1828 89 20 4 chr13 60273204 60273452 -41599717 - AluSx SINE Alu -38 274 23 2123 117 0 0 chr13 60273473 60273811 -41599358 - AluSg SINE Alu 0 338 1 2795 144 14 8 chr13 60274845 60275344 -41597825 + L1MB3 LINE L1 5682 6183 0 425 228 11 0 chr13 60276220 60276312 -41596857 + Tigger7 DNA MER2_type 2 94 -2393 * 1960 212 12 14 chr13 60276311 60276496 -41596673 + Tigger7 DNA MER2_type 43 227 -2260 2625 81 0 78 chr13 60276496 60276904 -41596265 - MER51B LTR ERV1 -1 376 1 1960 212 12 14 chr13 60276904 60277138 -41596031 + Tigger7 DNA MER2_type 227 461 -2026 907 194 117 14 chr13 60277134 60277527 -41595642 - MER110A LTR ERV1 -4 464 1 * 326 257 81 0 chr13 60277573 60277647 -41595522 + MER91C DNA MER1_type 31 110 -30 3517 50 2 0 chr13 60278053 60278490 -41594679 - L1PA5 LINE L1 0 6154 5717 5735 62 5 2 chr13 60278593 60279390 -41593779 - L1PA5 LINE L1 -887 5259 4461 10967 40 0 5 chr13 60279390 60280828 -41592341 + L1PA5 LINE L1 3026 4456 -1690 321 382 25 10 chr13 60281097 60281296 -41591873 - L2 LINE L2 -426 2888 2687 3786 177 55 11 chr13 60282204 60282232 -41590937 - MER6 DNA MER2_type 0 865 840 3449 78 16 0 chr13 60282232 60282683 -41590486 + LTR22A LTR ERVK 1 458 0 3786 177 55 11 chr13 60282683 60283450 -41589719 - MER6 DNA MER2_type -25 840 35 2488 91 19 3 chr13 60283689 60284052 -41589117 - L1PB1 LINE L1 -1 6150 5782 207 215 38 25 chr13 60284052 60284131 -41589038 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 * 252 185 31 15 chr13 60284080 60284145 -41589024 + (TA)n Simple_repeat Simple_repeat 1 66 0 292 152 30 0 chr13 60284169 60284235 -41588934 + (CA)n Simple_repeat Simple_repeat 2 69 0 1253 58 41 0 chr13 60284235 60284407 -41588762 + L1P5 LINE L1 5607 5785 -366 260 271 84 0 chr13 60284375 60284482 -41588687 - L1MC4 LINE L1 -1313 6729 6614 * 2719 159 41 2 chr13 60284453 60285475 -41587694 - L1P4 LINE L1 -456 5718 4664 253 214 202 22 chr13 60285475 60285564 -41587605 + L2 LINE L2 3168 3272 0 1056 123 0 147 chr13 60286279 60286531 -41586638 - AluSg/x SINE Alu 0 312 98 2466 126 117 13 chr13 60286545 60286997 -41586172 - MER1A DNA MER1_type 0 529 31 21 0 0 0 chr13 60288949 60288970 -41584199 + AT_rich Low_complexity Low_complexity 1 21 0 325 245 91 19 chr13 60292427 60292692 -41580477 + L1ME4a LINE L1 5789 6072 -49 327 345 9 0 chr13 60292739 60292855 -41580314 - L3 LINE CR1 -158 1419 1303 519 224 104 52 chr13 60293127 60293319 -41579850 - MIR SINE MIR -50 212 11 405 323 91 0 chr13 60293495 60293693 -41579476 + LTR33 LTR ERVL 1 216 -305 355 259 107 42 chr13 60293734 60293950 -41579219 + LTR33 LTR ERVL 292 521 0 2050 155 3 0 chr13 60295267 60295576 -41577593 + AluSx SINE Alu 1 310 -2 316 294 44 28 chr13 60296129 60296309 -41576860 + MER112 DNA MER1_type 17 199 -61 208 306 0 0 chr13 60296612 60296661 -41576508 + L2 LINE L2 3203 3251 -21 21 36 0 0 chr13 60297473 60297501 -41575668 + AT_rich Low_complexity Low_complexity 1 28 0 228 114 0 0 chr13 60299229 60299264 -41573905 - MIR SINE MIR -56 152 118 208 194 0 0 chr13 60299267 60299307 -41573862 - MIR SINE MIR -112 150 112 2206 102 0 22 chr13 60299868 60300183 -41572986 + AluSx SINE Alu 3 310 -2 2086 101 0 7 chr13 60300866 60301144 -41572025 + AluSx SINE Alu 4 279 -33 285 29 0 0 chr13 60301144 60301178 -41571991 + (CA)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr13 60302218 60302243 -41570926 + (A)n Simple_repeat Simple_repeat 1 25 0 262 350 80 0 chr13 60303202 60303339 -41569830 - MIR3 SINE MIR -11 197 50 26 64 0 0 chr13 60303610 60303657 -41569512 + AT_rich Low_complexity Low_complexity 1 47 0 2454 57 0 13 chr13 60303754 60304053 -41569116 + AluY SINE Alu 1 295 -16 21 0 0 0 chr13 60304377 60304398 -41568771 + AT_rich Low_complexity Low_complexity 1 21 0 597 218 173 20 chr13 60305057 60305259 -41567910 - MIR SINE MIR -2 260 28 2070 133 3 0 chr13 60305430 60305724 -41567445 + AluSx SINE Alu 1 295 -17 258 375 81 49 chr13 60306220 60306564 -41566605 + L2 LINE L2 2918 3272 0 205 170 0 43 chr13 60306679 60306726 -41566443 - L2 LINE L2 -1 3312 3268 231 36 0 0 chr13 60306796 60306824 -41566345 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 187 283 0 19 chr13 60306834 60306887 -41566282 - L2 LINE L2 -39 3233 3182 242 267 0 57 chr13 60307111 60307216 -41565953 + GA-rich Low_complexity Low_complexity 6 104 0 1993 155 36 28 chr13 60307345 60307706 -41565463 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr13 60308151 60308182 -41564987 + AT_rich Low_complexity Low_complexity 1 31 0 276 273 0 0 chr13 60308310 60308387 -41564782 + (TA)n Simple_repeat Simple_repeat 1 77 0 1755 162 37 7 chr13 60309360 60309656 -41563513 - AluJo SINE Alu -7 305 1 265 214 135 34 chr13 60310403 60310492 -41562677 - L2 LINE L2 -6 3266 3169 443 325 19 19 chr13 60310793 60310950 -41562219 + MIR3 SINE MIR 45 201 -7 23 33 0 0 chr13 60311306 60311336 -41561833 + AT_rich Low_complexity Low_complexity 1 30 0 207 273 18 0 chr13 60311512 60311567 -41561602 - MIR SINE MIR -64 144 89 23 33 0 0 chr13 60311729 60311759 -41561410 + AT_rich Low_complexity Low_complexity 1 30 0 2289 136 5 16 chr13 60313032 60313408 -41559761 - L1PA15 LINE L1 -1 6164 5793 237 314 121 34 chr13 60314136 60314664 -41558505 - L1M4 LINE L1 -3343 2803 2230 769 149 0 35 chr13 60314701 60314842 -41558327 + FRAM SINE Alu 41 176 0 207 154 51 0 chr13 60314938 60314977 -41558192 - L2 LINE L2 0 3313 3273 1698 180 3 14 chr13 60315925 60316220 -41556949 - AluJb SINE Alu -20 292 1 1895 121 0 46 chr13 60317079 60317384 -41555785 + AluSx SINE Alu 1 291 -21 22 0 0 0 chr13 60317384 60317406 -41555763 + AT_rich Low_complexity Low_complexity 1 22 0 2022 140 0 3 chr13 60317420 60317729 -41555440 + AluSx SINE Alu 1 308 0 359 294 0 0 chr13 60317746 60317838 -41555331 - L1MC4 LINE L1 -1338 6704 6613 24 53 0 0 chr13 60318073 60318111 -41555058 + AT_rich Low_complexity Low_complexity 1 38 0 822 251 48 30 chr13 60319325 60319556 -41553613 - MIR SINE MIR 0 262 28 253 228 0 35 chr13 60320708 60320765 -41552404 + Alu SINE Alu 226 280 -20 259 284 0 30 chr13 60321341 60321408 -41551761 + MIR3 SINE MIR 108 172 -36 22 0 0 0 chr13 60322111 60322133 -41551036 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 60322371 60322392 -41550777 + AT_rich Low_complexity Low_complexity 1 21 0 2354 51 3 55 chr13 60323138 60323450 -41549719 + AluY SINE Alu 1 296 -15 786 211 4 103 chr13 60323722 60323983 -41549186 + L1MC4 LINE L1 7808 8042 0 1091 300 70 6 chr13 60324068 60324552 -41548617 + L1ME3A LINE L1 5623 6137 -33 500 218 76 2 chr13 60325644 60325803 -41547366 + L1ME3A LINE L1 5728 5901 -303 26 0 0 0 chr13 60325876 60325902 -41547267 + AT_rich Low_complexity Low_complexity 1 26 0 227 192 39 103 chr13 60330887 60330965 -41542204 - MIR3 SINE MIR -32 176 104 3173 239 78 73 chr13 60331228 60332742 -41540427 - HAL1 LINE L1 0 2507 986 688 285 34 14 chr13 60332815 60333022 -41540147 - MIR SINE MIR -8 254 44 1952 148 0 20 chr13 60333607 60333912 -41539257 + AluJo SINE Alu 1 299 -13 462 319 26 16 chr13 60334670 60334846 -41538323 - MIR SINE MIR -65 143 16 637 162 0 18 chr13 60334941 60335052 -41538117 - MER5A DNA MER1_type -22 167 59 2132 223 93 4 chr13 60335927 60336488 -41536681 - L1MC4 LINE L1 -139 7903 7293 804 238 125 8 chr13 60336532 60336788 -41536381 - L1MC4 LINE L1 -956 7086 6801 363 264 8 32 chr13 60336796 60336921 -41536248 - L1MC4 LINE L1 -1339 6703 6582 251 54 0 0 chr13 60336936 60336973 -41536196 - L1PB1 LINE L1 0 6151 6115 207 0 0 0 chr13 60336975 60336998 -41536171 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1343 121 5 10 chr13 60336998 60337196 -41535973 - AluSg/x SINE Alu -31 279 83 269 93 23 0 chr13 60337196 60337239 -41535930 - L1PB1 LINE L1 -27 6124 6081 * 441 219 141 0 chr13 60337235 60337363 -41535806 - L1MC4 LINE L1 -1449 6593 6448 2584 130 52 2 chr13 60337903 60338311 -41534858 + MSTA LTR MaLR 1 428 0 2362 92 0 0 chr13 60338511 60338806 -41534363 + AluSc SINE Alu 1 295 -14 1380 156 26 115 chr13 60338816 60339163 -41534006 + AluYb8 SINE Alu 1 316 -2 374 78 0 0 chr13 60340294 60340345 -41532824 + MADE1 DNA Mariner 30 80 0 291 261 58 0 chr13 60340799 60340868 -41532301 + L2 LINE L2 3199 3271 -1 1986 98 38 11 chr13 60341979 60342266 -41530903 - AluSg SINE Alu -15 295 1 21 57 0 0 chr13 60342890 60342925 -41530244 + AT_rich Low_complexity Low_complexity 1 35 0 2422 76 3 0 chr13 60343059 60343361 -41529808 + AluSp SINE Alu 1 303 -10 352 182 7 0 chr13 60344207 60344283 -41528886 + AluS SINE Alu 1 57 -251 1353 108 5 0 chr13 60344416 60344610 -41528559 + AluSg/x SINE Alu 107 301 -11 23 0 0 0 chr13 60345034 60345057 -41528112 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 60345233 60345254 -41527915 + AT_rich Low_complexity Low_complexity 1 21 0 2087 87 22 0 chr13 60345898 60346202 -41526967 - AluSp SINE Alu 0 314 5 2083 109 0 27 chr13 60346216 60346543 -41526626 - AluSq SINE Alu 0 319 1 361 247 145 54 chr13 60347493 60347679 -41525490 + MIR SINE MIR 31 233 -29 244 239 92 64 chr13 60347885 60347994 -41525175 + MER69A DNA AcHobo 15 126 -51 1019 121 0 0 chr13 60348005 60348146 -41525023 + FLAM_C SINE Alu 1 141 -2 267 213 147 0 chr13 60348476 60348551 -41524618 + L1MD3 LINE L1 7890 7975 -20 4421 63 19 2 chr13 60348552 60349127 -41524042 - L1PA7 LINE L1 0 6154 5570 363 298 162 25 chr13 60349236 60349782 -41523387 - L1ME3A LINE L1 -280 5884 5259 398 341 80 12 chr13 60349842 60350091 -41523078 - L1ME3A LINE L1 -977 5169 4904 1849 179 0 16 chr13 60350248 60350561 -41522608 + AluJb SINE Alu 1 308 -4 459 335 51 19 chr13 60350741 60350899 -41522270 + L2 LINE L2 3102 3264 -8 257 257 0 40 chr13 60351206 60351280 -41521889 - L2 LINE L2 -1 3312 3242 280 0 24 24 chr13 60351309 60351350 -41521819 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 351 0 0 0 chr13 60351349 60351388 -41521781 + (TG)n Simple_repeat Simple_repeat 1 39 0 244 295 114 29 chr13 60353664 60353769 -41519400 - L3b LINE CR1 -11 1572 1459 3422 38 14 5 chr13 60353814 60354240 -41518929 - L1PA4 LINE L1 -3 6152 5723 209 105 0 26 chr13 60354995 60355033 -41518136 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 211 266 31 16 chr13 60356022 60356086 -41517083 - L2 LINE L2 -214 3058 2994 203 426 33 5 chr13 60356696 60356907 -41516262 - L2 LINE L2 -622 2692 2476 218 364 123 0 chr13 60357153 60357340 -41515829 + L2 LINE L2 2118 2327 -987 187 231 74 91 chr13 60360577 60360698 -41512471 - L2 LINE L2 -2 3311 3193 1676 145 10 61 chr13 60360960 60361257 -41511912 + AluJb SINE Alu 1 282 -30 207 0 0 0 chr13 60361260 60361283 -41511886 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1659 145 10 61 chr13 60361721 60362018 -41511151 + AluJb SINE Alu 1 282 -30 207 0 0 0 chr13 60362021 60362044 -41511125 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 28 29 0 0 chr13 60362803 60362838 -41510331 + AT_rich Low_complexity Low_complexity 1 35 0 527 132 13 0 chr13 60363614 60363690 -41509479 + AluJb SINE Alu 206 282 -30 1920 131 7 3 chr13 60364537 60364834 -41508335 - AluSx SINE Alu -14 298 1 968 237 67 6 chr13 60366174 60366486 -41506683 + L1ME LINE L1 5391 5721 -445 434 146 101 0 chr13 60366486 60366575 -41506594 + MER4A LTR ERV1 1 98 -566 1425 142 22 78 chr13 60366575 60366941 -41506228 + MER4A LTR ERV1 261 664 0 316 206 0 0 chr13 60366946 60367009 -41506160 + L1ME LINE L1 5723 5785 -381 1674 101 3 98 chr13 60367009 60367325 -41505844 - MER4B LTR ERV1 0 610 325 418 240 42 0 chr13 60367326 60367422 -41505747 + L2 LINE L2 2841 2940 -374 344 154 0 0 chr13 60367453 60367505 -41505664 - Tigger7 DNA MER2_type -2404 83 32 228 241 54 71 chr13 60369439 60369551 -41503618 + MIR3 SINE MIR 88 197 -11 203 231 33 88 chr13 60371341 60371432 -41501737 - MIR3 SINE MIR -1 207 122 2172 126 0 16 chr13 60371916 60372225 -41500944 + AluSx SINE Alu 1 304 -8 1547 177 7 28 chr13 60372374 60372657 -41500512 + AluJb SINE Alu 5 281 -31 252 0 0 0 chr13 60372657 60372685 -41500484 + (CA)n Simple_repeat Simple_repeat 1 28 0 226 336 69 8 chr13 60372818 60372949 -41500220 + MIR SINE MIR 109 247 -15 3446 269 152 21 chr13 60373021 60374033 -41499136 - L2 LINE L2 -89 3224 2346 203 53 0 53 chr13 60374033 60374071 -41499098 + (CAGAGA)n Simple_repeat Simple_repeat 4 39 0 3446 269 152 21 chr13 60374071 60374716 -41498453 - L2 LINE L2 -967 2346 1352 2159 119 0 3 chr13 60375434 60375729 -41497440 - AluSx SINE Alu -18 294 1 21 36 0 0 chr13 60375965 60375993 -41497176 + AT_rich Low_complexity Low_complexity 1 28 0 447 218 62 98 chr13 60379465 60379690 -41493479 - MLT1J LTR MaLR -7 504 288 527 258 82 21 chr13 60379806 60380000 -41493169 - MLT1J LTR MaLR -299 212 7 2259 111 0 16 chr13 60380379 60380686 -41492483 - AluSx SINE Alu -10 302 1 21 71 0 0 chr13 60380825 60380867 -41492302 + AT_rich Low_complexity Low_complexity 1 42 0 226 167 56 0 chr13 60381649 60381721 -41491448 + (TA)n Simple_repeat Simple_repeat 2 77 0 277 118 0 66 chr13 60381755 60381831 -41491338 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 220 322 0 0 chr13 60383158 60383217 -41489952 - MIR SINE MIR -71 137 79 216 97 0 0 chr13 60383253 60383284 -41489885 + (CA)n Simple_repeat Simple_repeat 2 32 0 359 395 32 0 chr13 60383381 60383538 -41489631 + L2 LINE L2 3110 3271 -1 196 237 88 124 chr13 60384275 60384469 -41488700 - L2 LINE L2 -1 3312 3126 229 308 84 71 chr13 60384649 60385056 -41488113 + L2 LINE L2 2562 2973 -299 21 71 0 0 chr13 60385138 60385180 -41487989 + AT_rich Low_complexity Low_complexity 1 42 0 1482 176 50 24 chr13 60385182 60385562 -41487607 + Charlie5 DNA MER1_type 2235 2624 0 1852 161 0 13 chr13 60385635 60385940 -41487229 + AluSx SINE Alu 1 301 -11 189 174 22 43 chr13 60385997 60386043 -41487126 + L2 LINE L2 3269 3313 0 1441 140 193 3 chr13 60386096 60386277 -41486892 + MER44D DNA MER2_type 1 146 -2345 192 77 0 0 chr13 60386277 60386303 -41486866 + (TATG)n Simple_repeat Simple_repeat 3 28 0 1441 140 193 3 chr13 60386303 60386406 -41486763 + MER44D DNA MER2_type 146 609 0 800 41 236 0 chr13 60386577 60386700 -41486469 + L1PA4 LINE L1 6000 6151 -4 1965 112 17 44 chr13 60386736 60387031 -41486138 + AluSx SINE Alu 1 287 -25 29 28 0 0 chr13 60387454 60387490 -41485679 + AT_rich Low_complexity Low_complexity 1 36 0 613 172 35 55 chr13 60388248 60388393 -41484776 - MIR SINE MIR 0 262 121 21 0 0 0 chr13 60388608 60388629 -41484540 + AT_rich Low_complexity Low_complexity 1 21 0 2247 95 0 0 chr13 60388972 60389257 -41483912 - AluY SINE Alu 0 311 27 3020 197 138 7 chr13 60389564 60390426 -41482743 - Charlie1 DNA MER1_type -38 2723 1749 568 226 129 7 chr13 60390426 60390581 -41482588 - MLT1D LTR MaLR 0 505 332 25 0 0 0 chr13 60391246 60391271 -41481898 + AT_rich Low_complexity Low_complexity 1 25 0 2468 69 0 3 chr13 60391558 60391864 -41481305 + AluY SINE Alu 1 305 -6 314 345 97 72 chr13 60391873 60392235 -41480934 - L2 LINE L2 -36 3236 2866 1703 199 0 7 chr13 60392336 60392637 -41480532 + AluJo SINE Alu 1 299 -13 1879 51 55 0 chr13 60393168 60393405 -41479764 - AluY SINE Alu -17 294 45 657 148 8 74 chr13 60393472 60393594 -41479575 + FLAM_C SINE Alu 5 118 -15 212 283 28 57 chr13 60397456 60397562 -41475607 + MIR SINE MIR 52 154 -108 469 112 7 0 chr13 60397571 60397648 -41475521 - LTR54 LTR ERV1 -375 135 54 255 365 87 74 chr13 60397807 60398119 -41475050 - L2 LINE L2 -5 3267 2952 280 180 0 16 chr13 60398126 60398187 -41474982 - MLT1K LTR MaLR -18 570 511 6110 87 30 1 chr13 60399056 60400024 -41473145 + L1PA14 LINE L1 5152 6154 -7 1152 147 0 0 chr13 60400236 60400399 -41472770 + AluSq SINE Alu 1 163 -150 270 118 132 0 chr13 60400553 60400621 -41472548 + L1 LINE L1 5151 5227 -919 3722 222 100 38 chr13 60400882 60401288 -41471881 + L1MC4 LINE L1 6674 7053 -989 2303 120 46 3 chr13 60401288 60401637 -41471532 + THE1B LTR MaLR 1 364 0 3722 222 100 38 chr13 60401637 60401690 -41471479 + L1MC4 LINE L1 7053 7101 -941 2004 152 3 7 chr13 60401690 60401992 -41471177 + AluJb SINE Alu 1 301 -11 3722 222 100 38 chr13 60401992 60402831 -41470338 + L1MC4 LINE L1 7101 8042 0 446 225 73 20 chr13 60404282 60404433 -41468736 + L1MC3 LINE L1 7627 7785 0 198 234 64 0 chr13 60404494 60404541 -41468628 - L2 LINE L2 -3 3310 3261 376 268 155 30 chr13 60405918 60406086 -41467083 + MIR SINE MIR 12 200 -62 23 0 0 0 chr13 60406139 60406162 -41467007 + AT_rich Low_complexity Low_complexity 1 23 0 1058 248 19 19 chr13 60406438 60406753 -41466416 + L2 LINE L2 1921 2235 -1079 352 299 67 62 chr13 60406728 60407146 -41466023 + L2 LINE L2 2804 3223 -90 * 293 322 0 0 chr13 60407543 60407630 -41465539 + CT-rich Low_complexity Low_complexity 1 87 0 1779 153 7 27 chr13 60407630 60407930 -41465239 - AluJo SINE Alu -18 294 1 360 0 0 0 chr13 60408107 60408147 -41465022 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr13 60408356 60408379 -41464790 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 60408608 60408636 -41464533 + AT_rich Low_complexity Low_complexity 1 28 0 2226 102 16 0 chr13 60408640 60408944 -41464225 + AluSp SINE Alu 1 309 -4 268 140 40 0 chr13 60409858 60409908 -41463261 - L2 LINE L2 -5 3267 3216 2194 119 3 0 chr13 60410539 60410849 -41462320 + AluSx SINE Alu 1 311 -1 321 279 41 7 chr13 60411839 60411986 -41461183 + HAL1 LINE L1 1625 1776 -731 277 245 85 0 chr13 60412159 60412253 -41460916 + HAL1 LINE L1 2047 2148 -359 273 328 45 55 chr13 60412614 60412886 -41460283 + L2 LINE L2 2460 2728 -586 2306 75 0 30 chr13 60412886 60413191 -41459978 - AluY SINE Alu -15 296 1 273 328 45 55 chr13 60413191 60413321 -41459848 + L2 LINE L2 2728 2858 -456 318 296 30 59 chr13 60413403 60413538 -41459631 + MIR3 SINE MIR 68 198 -10 201 39 0 0 chr13 60414133 60414159 -41459010 + (TTG)n Simple_repeat Simple_repeat 2 27 0 387 0 0 0 chr13 60415080 60415123 -41458046 + (CA)n Simple_repeat Simple_repeat 2 44 0 1580 159 230 0 chr13 60416288 60416653 -41456516 - L1MC3 LINE L1 -18 7767 7319 2208 93 7 20 chr13 60417305 60417607 -41455562 - AluSx SINE Alu -14 298 1 180 260 52 83 chr13 60419244 60419340 -41453829 + L2 LINE L2 3180 3272 0 559 161 40 32 chr13 60420245 60420369 -41452800 - L1MB5 LINE L1 -6 6168 6044 197 33 33 0 chr13 60421887 60421917 -41451252 + (TTA)n Simple_repeat Simple_repeat 1 31 0 209 279 7 118 chr13 60423100 60423236 -41449933 - MER5A DNA MER1_type 0 189 69 * 228 246 46 123 chr13 60423173 60423303 -41449866 + MER5B DNA MER1_type 59 178 0 242 149 11 172 chr13 60423497 60423584 -41449585 + L2 LINE L2 2355 2427 -887 3079 121 34 6 chr13 60423904 60424401 -41448768 + MER9 LTR ERVK 1 511 0 686 270 76 25 chr13 60424719 60424956 -41448213 - MIR SINE MIR -8 254 6 301 359 19 0 chr13 60424977 60425083 -41448086 + L2 LINE L2 3142 3249 -23 264 186 0 0 chr13 60425095 60425154 -41448015 + (TGAA)n Simple_repeat Simple_repeat 1 59 0 184 333 69 11 chr13 60425190 60425277 -41447892 - MIR SINE MIR -97 111 20 2414 153 59 32 chr13 60425293 60425890 -41447279 + MER4B LTR ERV1 1 779 0 2167 104 6 25 chr13 60426314 60426630 -41446539 + AluSg SINE Alu 1 310 0 335 331 166 31 chr13 60428141 60428491 -41444678 - L2 LINE L2 -368 2946 2550 931 205 10 31 chr13 60428511 60428706 -41444463 + AluJo SINE Alu 1 191 -121 381 240 10 39 chr13 60428920 60429024 -41444145 - L2 LINE L2 -992 2322 2222 367 245 108 49 chr13 60429043 60429176 -41443993 + MIR SINE MIR 40 175 -61 756 202 35 12 chr13 60429182 60429355 -41443814 - MER58A DNA MER1_type 0 224 48 792 194 56 39 chr13 60429393 60429573 -41443596 + MER5A DNA MER1_type 7 189 0 1855 151 24 3 chr13 60429741 60430032 -41443137 + AluSx SINE Alu 1 297 -15 30 0 0 0 chr13 60430174 60430204 -41442965 + AT_rich Low_complexity Low_complexity 1 30 0 1904 138 13 10 chr13 60430487 60430791 -41442378 + AluSx SINE Alu 1 305 -7 2369 103 0 0 chr13 60430856 60431167 -41442002 + AluSx SINE Alu 1 311 -1 34 55 0 0 chr13 60432178 60432233 -41440936 + AT_rich Low_complexity Low_complexity 1 55 0 2170 121 0 0 chr13 60432610 60432907 -41440262 + AluSx SINE Alu 1 297 -15 922 194 13 0 chr13 60433056 60433211 -41439958 - AluJb SINE Alu -16 296 140 338 119 51 0 chr13 60433211 60433270 -41439899 + AluJo SINE Alu 73 134 -168 336 231 0 0 chr13 60433281 60433346 -41439823 - AluJ/FLAM SINE Alu -237 65 1 2324 202 60 49 chr13 60434781 60435551 -41437618 + LTR1B LTR ERV1 1 772 -13 316 338 36 29 chr13 60435570 60435709 -41437460 + MER5A DNA MER1_type 43 182 -7 830 203 10 53 chr13 60435874 60436081 -41437088 + MER20 DNA MER1_type 1 198 -21 2734 231 82 6 chr13 60436163 60437116 -41436053 - L1ME3 LINE L1 -73 6089 5072 539 231 60 0 chr13 60437256 60437373 -41435796 + FLAM_A SINE Alu 1 124 -9 1601 139 74 56 chr13 60437602 60437750 -41435419 - MER46B DNA MER2_type -2497 234 200 2393 97 0 0 chr13 60437750 60438060 -41435109 + AluSx SINE Alu 1 310 -2 1601 139 74 56 chr13 60438060 60438249 -41434920 - MER46B DNA MER2_type -2531 200 16 492 180 280 20 chr13 60438554 60438704 -41434465 + MER5A DNA MER1_type 1 189 0 440 271 8 8 chr13 60440033 60440162 -41433007 - MER94 DNA DNA -3 131 3 653 290 57 29 chr13 60440664 60440943 -41432226 + Charlie8 DNA MER1_type 1 287 -2130 1136 71 0 0 chr13 60441692 60441833 -41431336 + AluSg/x SINE Alu 152 292 -18 312 158 0 0 chr13 60442641 60442698 -41430471 + (CA)n Simple_repeat Simple_repeat 1 57 0 23 33 0 0 chr13 60443320 60443350 -41429819 + GC_rich Low_complexity Low_complexity 1 30 0 183 129 0 0 chr13 60443987 60444018 -41429151 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 1684 118 114 11 chr13 60445373 60445653 -41427516 - AluSg1 SINE Alu 0 309 1 413 238 65 130 chr13 60445718 60446088 -41427081 + MLT1I LTR MaLR 55 400 -9 1745 163 0 7 chr13 60446304 60446586 -41426583 + AluSx SINE Alu 1 280 -32 183 121 0 0 chr13 60446586 60446614 -41426555 + (GA)n Simple_repeat Simple_repeat 1 28 0 191 287 138 0 chr13 60447050 60447137 -41426032 + L2 LINE L2 3215 3313 0 425 345 23 39 chr13 60449161 60449419 -41423750 - MLT1K LTR MaLR -218 370 117 341 295 21 30 chr13 60449473 60449507 -41423662 + L1MA5A LINE L1 5936 5969 -328 2188 129 0 0 chr13 60449507 60449801 -41423368 + AluSx SINE Alu 1 294 -18 341 295 21 30 chr13 60449801 60450000 -41423169 + L1MA5A LINE L1 5969 6167 -130 1530 163 25 15 chr13 60449806 60450132 -41423037 + L1MA8 LINE L1 5961 6289 -2 338 219 0 12 chr13 60450168 60450250 -41422919 + L1M4 LINE L1 3112 3192 -2954 2224 77 0 61 chr13 60450535 60450846 -41422323 + AluSc SINE Alu 1 292 -17 1750 170 7 3 chr13 60451026 60451326 -41421843 + AluJb SINE Alu 1 301 -11 186 306 0 0 chr13 60451377 60451426 -41421743 + L2 LINE L2 3220 3268 -4 409 176 14 14 chr13 60451532 60451606 -41421563 - AluJo SINE Alu -138 174 101 200 171 71 0 chr13 60451610 60451680 -41421489 + (TA)n Simple_repeat Simple_repeat 2 76 0 403 247 228 6 chr13 60451798 60451960 -41421209 - MIR SINE MIR 0 262 65 295 264 35 62 chr13 60452105 60452249 -41420920 + MER77 LTR ERV1 66 205 -400 483 243 18 81 chr13 60452275 60452535 -41420634 + MER21B LTR ERV1 144 388 -217 2101 128 7 3 chr13 60453221 60453518 -41419651 + AluSx SINE Alu 1 298 -14 276 77 0 0 chr13 60453534 60453573 -41419596 + (TG)n Simple_repeat Simple_repeat 2 40 0 1223 109 64 0 chr13 60453574 60453794 -41419375 + MER44D DNA MER2_type 20 523 -86 231 232 0 0 chr13 60453822 60453878 -41419291 + (TA)n Simple_repeat Simple_repeat 2 57 0 367 225 25 0 chr13 60453884 60453964 -41419205 + MER44D DNA MER2_type 524 605 0 21 0 0 0 chr13 60454043 60454064 -41419105 + AT_rich Low_complexity Low_complexity 1 21 0 2012 93 4 15 chr13 60454522 60454791 -41418378 - AluSp SINE Alu -15 298 33 219 322 33 33 chr13 60454888 60454978 -41418191 - L2 LINE L2 -1 3312 3223 3226 134 6 6 chr13 60454986 60455486 -41417683 - MER1A DNA MER1_type 0 529 30 260 232 18 0 chr13 60455490 60455546 -41417623 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 253 54 0 27 chr13 60455574 60455611 -41417558 + (CA)n Simple_repeat Simple_repeat 2 37 0 2372 66 10 3 chr13 60455832 60456121 -41417048 - AluSc SINE Alu -18 291 1 972 65 72 13 chr13 60456121 60456274 -41416895 - MER30 DNA MER1_type -68 162 1 565 208 42 73 chr13 60456607 60456799 -41416370 + Charlie6 DNA MER1_type 55 240 -3260 626 204 136 0 chr13 60456866 60457028 -41416141 + Charlie6 DNA MER1_type 1632 1815 -1685 255 333 20 0 chr13 60457166 60457319 -41415850 + (TG)n Simple_repeat Simple_repeat 2 157 0 2269 113 0 3 chr13 60457502 60457803 -41415366 + AluSx SINE Alu 1 300 -12 284 296 12 12 chr13 60458040 60458121 -41415048 - L2 LINE L2 -244 3028 2948 237 33 0 0 chr13 60458702 60458732 -41414437 + (CA)n Simple_repeat Simple_repeat 1 30 0 204 386 131 39 chr13 60459368 60459757 -41413412 - L2 LINE L2 0 3272 2848 679 104 0 10 chr13 60460471 60460567 -41412602 - AluJ/FLAM SINE Alu -215 97 3 899 142 57 6 chr13 60462304 60462480 -41410689 + L1MB2 LINE L1 5987 6171 0 1326 200 55 35 chr13 60462494 60462784 -41410385 + AluJo SINE Alu 15 310 -2 2110 142 0 0 chr13 60463646 60463956 -41409213 - AluSx SINE Alu -2 310 1 379 217 60 0 chr13 60464172 60464255 -41408914 - MIR SINE MIR -78 184 97 231 36 0 0 chr13 60464468 60464496 -41408673 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 218 248 66 57 chr13 60464500 60464637 -41408532 - L2 LINE L2 -16 3297 3083 1479 202 25 3 chr13 60465427 60465709 -41407460 + AluJo SINE Alu 1 288 -24 318 313 84 22 chr13 60465749 60465928 -41407241 - L2 LINE L2 -908 2406 2217 463 307 110 19 chr13 60466106 60466546 -41406623 - LTR33 LTR ERVL 0 521 1 1559 91 0 0 chr13 60466695 60466893 -41406276 + AluSq SINE Alu 1 198 -115 798 320 59 103 chr13 60467235 60468184 -41404985 - L2 LINE L2 -1095 2219 1313 1423 220 44 25 chr13 60468619 60468982 -41404187 + MLT1A2 LTR MaLR 2 371 -3 1900 149 0 0 chr13 60469848 60470149 -41403020 + AluJb SINE Alu 1 301 0 2226 97 10 6 chr13 60470212 60470523 -41402646 + AluSp SINE Alu 1 312 -1 297 289 47 68 chr13 60470532 60470756 -41402413 + HAL1b LINE L1 39 255 -1093 1873 168 3 3 chr13 60470756 60471065 -41402104 + AluJo SINE Alu 1 309 -3 297 289 47 68 chr13 60471065 60471162 -41402007 + HAL1b LINE L1 255 353 -995 384 173 0 77 chr13 60471192 60471296 -41401873 - L1PA16 LINE L1 -108 6058 5963 353 298 48 69 chr13 60471297 60471485 -41401684 + HAL1 LINE L1 1427 1610 -897 591 214 0 0 chr13 60471740 60471857 -41401312 + FAM SINE Alu 4 120 -65 1959 109 46 17 chr13 60471958 60472260 -41400909 + AluSx SINE Alu 2 312 0 377 275 0 0 chr13 60472854 60472945 -41400224 - Charlie8 DNA MER1_type -2184 233 143 707 238 83 84 chr13 60473686 60474049 -41399120 - L1MC5 LINE L1 -74 7887 7525 2042 147 0 3 chr13 60474049 60474356 -41398813 - AluSx SINE Alu -6 306 1 707 238 83 84 chr13 60474356 60474538 -41398631 - L1MC5 LINE L1 -436 7525 7341 685 176 112 21 chr13 60474538 60474725 -41398444 + MER3 DNA MER1_type 2 205 -4 707 238 83 84 chr13 60474725 60474770 -41398399 - L1MC5 LINE L1 -620 7341 7297 272 143 0 0 chr13 60474884 60474933 -41398236 - L1MC5 LINE L1 -741 7220 7172 267 198 106 118 chr13 60474942 60475271 -41397898 - L1MC5 LINE L1 -44 7917 7593 263 137 10 167 chr13 60475243 60475312 -41397857 - L1MC5 LINE L1 -1000 6961 6911 * 2451 130 6 0 chr13 60475312 60475674 -41397495 - THE1B LTR MaLR 0 364 1 263 137 10 167 chr13 60475674 60475706 -41397463 - L1MC5 LINE L1 -1050 6911 6876 246 188 47 0 chr13 60475742 60475806 -41397363 - L1MC5 LINE L1 -1168 6793 6727 * 647 208 15 0 chr13 60475801 60475931 -41397238 - L1MD3 LINE L1 -462 7533 7402 287 129 11 129 chr13 60475943 60476036 -41397133 - MLT1F1 LTR MaLR -450 117 36 1542 161 21 27 chr13 60476040 60476369 -41396800 - L1MD3 LINE L1 -880 7115 6789 2284 98 0 0 chr13 60476953 60477249 -41395920 + AluSg SINE Alu 1 296 -14 228 380 12 18 chr13 60477511 60477674 -41395495 + L2 LINE L2 1216 1377 -1937 2387 70 3 16 chr13 60477735 60478049 -41395120 - AluY SINE Alu -1 310 1 693 169 7 29 chr13 60478061 60478197 -41394972 - FLAM_C SINE Alu 0 133 1 647 218 64 0 chr13 60478211 60478367 -41394802 - LTR67 LTR ERVL 0 557 392 676 257 101 29 chr13 60478442 60478749 -41394420 + MLT1I LTR MaLR 61 389 -20 1610 189 10 107 chr13 60479081 60479588 -41393581 + MER101 LTR ERV1 11 468 -6 1154 225 67 3 chr13 60479851 60480135 -41393034 + L1MC4 LINE L1 7407 7708 -334 3713 180 64 37 chr13 60480135 60481610 -41391559 - MER52A LTR ERV1 0 1755 1 469 206 88 7 chr13 60481610 60481746 -41391423 + L1MC4 LINE L1 7705 7851 -191 530 213 0 0 chr13 60481780 60481922 -41391247 - AluSg/x SINE Alu 0 329 188 1330 153 10 5 chr13 60481922 60482131 -41391038 + AluJb SINE Alu 85 294 -18 4720 145 37 36 chr13 60482131 60482994 -41390175 - L1MB1 LINE L1 -6 6162 5302 1094 131 0 12 chr13 60482994 60483154 -41390015 - FRAM SINE Alu -6 160 3 4720 145 37 36 chr13 60483154 60483308 -41389861 - L1MB1 LINE L1 -866 5302 5150 29 47 0 0 chr13 60483517 60483560 -41389609 + AT_rich Low_complexity Low_complexity 1 43 0 752 241 111 24 chr13 60484288 60484495 -41388674 + MIR SINE MIR 6 230 -32 392 125 25 25 chr13 60484650 60484730 -41388439 - MADE1 DNA Mariner 0 80 1 306 229 43 0 chr13 60484826 60484896 -41388273 - AluSp SINE Alu -96 207 135 185 207 149 58 chr13 60485712 60485799 -41387370 - MIR SINE MIR -44 218 124 1795 178 20 10 chr13 60485816 60486114 -41387055 - AluJb SINE Alu -11 301 1 2316 134 12 53 chr13 60486324 60486741 -41386428 + MER57A LTR ERV1 4 403 0 493 188 0 0 chr13 60487050 60487135 -41386034 + L2 LINE L2 3229 3313 0 664 269 133 7 chr13 60487734 60488042 -41385127 - L1ME3A LINE L1 -298 5872 5526 189 107 0 0 chr13 60488171 60488199 -41384970 + (A)n Simple_repeat Simple_repeat 1 28 0 1956 117 88 20 chr13 60488473 60488814 -41384355 - THE1B LTR MaLR 0 364 1 520 220 55 12 chr13 60488814 60488983 -41384186 + MLT1J LTR MaLR 23 168 -278 312 274 47 28 chr13 60489021 60489127 -41384042 + MLT1J LTR MaLR 279 386 -125 398 302 56 22 chr13 60489405 60489584 -41383585 - MER20 DNA MER1_type 0 219 35 1507 193 11 72 chr13 60489703 60490051 -41383118 + MSTD LTR MaLR 1 327 -69 481 121 72 23 chr13 60490060 60490265 -41382904 + AluY SINE Alu 1 301 -8 296 135 0 0 chr13 60490309 60490361 -41382808 + MSTD LTR MaLR 406 457 0 1745 188 0 13 chr13 60490505 60490809 -41382360 + AluJb SINE Alu 1 300 -12 2409 151 19 2 chr13 60491017 60491449 -41381720 + L1MC1 LINE L1 5769 6207 -126 3905 159 61 35 chr13 60491449 60492818 -41380351 + pTR5 LTR ERV1 743 2295 -143 466 122 99 68 chr13 60492830 60492965 -41380204 + L1MC1 LINE L1 6204 6344 0 2206 135 97 5 chr13 60493018 60493410 -41379759 + MSTA LTR MaLR 1 428 0 8489 180 30 2 chr13 60493411 60495003 -41378166 + MSTA-int LTR MaLR 2 1637 -14 2505 118 80 5 chr13 60495017 60495415 -41377754 + MSTA LTR MaLR 1 428 0 392 273 50 0 chr13 60495638 60495737 -41377432 - MER94 DNA DNA -2 132 29 587 235 132 0 chr13 60496064 60496200 -41376969 - AluJo SINE Alu -37 275 122 4678 156 97 3 chr13 60496224 60497196 -41375973 + L1MC3 LINE L1 6701 7763 -22 2372 97 3 0 chr13 60497245 60497556 -41375613 + AluSx SINE Alu 1 312 0 1991 157 0 10 chr13 60497950 60498250 -41374919 - AluSx SINE Alu -9 303 7 257 247 93 21 chr13 60498842 60498939 -41374230 - L1 LINE L1 -1304 4842 4739 23 0 0 0 chr13 60499262 60499285 -41373884 + AT_rich Low_complexity Low_complexity 1 23 0 310 252 29 48 chr13 60499406 60499509 -41373660 - L1MB7 LINE L1 -25 6159 6059 21 0 0 0 chr13 60499519 60499540 -41373629 + AT_rich Low_complexity Low_complexity 1 21 0 194 330 64 32 chr13 60499973 60500067 -41373102 - L2 LINE L2 -33 3280 3184 228 247 32 21 chr13 60500094 60500187 -41372982 - MLT1J LTR MaLR -4 507 414 246 123 15 62 chr13 60500646 60500711 -41372458 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 2640 140 36 17 chr13 60500712 60501071 -41372098 + L1MA9 LINE L1 5783 6157 -155 342 67 0 0 chr13 60501071 60501116 -41372053 + (CA)n Simple_repeat Simple_repeat 1 45 0 2640 140 36 17 chr13 60501116 60501276 -41371893 + L1MA9 LINE L1 6157 6312 0 558 139 0 0 chr13 60501595 60501674 -41371495 + AluS SINE Alu 1 79 -233 1799 118 0 37 chr13 60501677 60501947 -41371222 + AluSq SINE Alu 49 308 -5 2621 58 0 3 chr13 60502308 60502620 -41370549 + AluY SINE Alu 1 311 0 420 294 104 40 chr13 60503762 60503963 -41369206 - MIR SINE MIR -36 226 13 239 259 247 0 chr13 60504081 60504166 -41369003 + L2 LINE L2 3165 3270 -2 894 241 154 36 chr13 60504631 60505347 -41367822 + L1ME3A LINE L1 5330 6144 -26 1333 86 0 0 chr13 60505620 60505783 -41367386 + AluY SINE Alu 2 164 -147 2451 68 0 7 chr13 60505992 60506301 -41366868 - AluY SINE Alu -4 307 1 1850 128 23 36 chr13 60506354 60506658 -41366511 + AluJb SINE Alu 1 300 -12 718 197 0 0 chr13 60507037 60507164 -41366005 - AluJb SINE Alu -10 302 176 995 256 200 18 chr13 60507969 60508637 -41364532 - L2 LINE L2 -36 3277 2475 1143 165 141 0 chr13 60508641 60508889 -41364280 - L1MCa LINE L1 -6125 301 19 1503 191 50 7 chr13 60508961 60509243 -41363926 - AluJo SINE Alu -18 294 1 1510 156 41 3 chr13 60509434 60509846 -41363323 + MLT1D LTR MaLR 1 459 -46 911 219 144 38 chr13 60511503 60511900 -41361269 - L1MC4 LINE L1 0 8042 7604 990 209 77 103 chr13 60511975 60512299 -41360870 - MLT1E2 LTR MaLR -186 440 156 1890 139 0 69 chr13 60512299 60512616 -41360553 - AluSx SINE Alu -17 295 1 990 209 77 103 chr13 60512616 60512707 -41360462 - MLT1E2 LTR MaLR -470 156 64 379 192 14 0 chr13 60512757 60512830 -41360339 + MIR SINE MIR 162 235 -27 2234 103 3 3 chr13 60513039 60513340 -41359829 - AluSx SINE Alu -11 301 1 438 36 0 0 chr13 60513395 60513451 -41359718 + (CA)n Simple_repeat Simple_repeat 2 57 0 877 200 49 73 chr13 60514038 60514283 -41358886 + MER8 DNA MER2_type 1 239 0 400 195 13 0 chr13 60514876 60514953 -41358216 + MLT1D LTR MaLR 1 78 -427 2480 117 20 40 chr13 60514955 60515346 -41357823 - MER65A LTR ERV1 -8 437 55 2259 131 3 0 chr13 60515346 60515658 -41357511 - AluSq SINE Alu 0 313 1 2480 117 20 40 chr13 60515658 60515712 -41357457 - MER65A LTR ERV1 -390 55 1 1322 201 12 104 chr13 60515750 60515975 -41357194 + MLT1D LTR MaLR 113 282 -223 2814 118 25 5 chr13 60515975 60516417 -41356752 + L1PA15 LINE L1 5715 6165 0 1322 201 12 104 chr13 60516417 60516614 -41356555 + MLT1D LTR MaLR 282 496 -9 524 321 54 24 chr13 60516616 60516873 -41356296 + MIR SINE MIR 2 262 0 319 259 80 27 chr13 60516887 60516999 -41356170 - MIR SINE MIR -73 189 72 2027 121 14 14 chr13 60517549 60517867 -41355302 + AluSx SINE Alu 1 312 0 982 127 80 0 chr13 60517869 60518019 -41355150 + AluSg/x SINE Alu 145 306 -6 1846 244 126 45 chr13 60518450 60518525 -41354644 + HsTC2 DNA Tc2 2 70 -1828 2172 105 3 19 chr13 60518525 60518840 -41354329 - AluY SINE Alu -1 310 1 1846 244 126 45 chr13 60518840 60518988 -41354181 + HsTC2 DNA Tc2 70 205 -1693 1415 99 27 9 chr13 60518988 60519211 -41353958 + L1MA1 LINE L1 6076 6302 0 1846 244 126 45 chr13 60519211 60519876 -41353293 + HsTC2 DNA Tc2 205 963 -935 2779 215 34 5 chr13 60519906 60520516 -41352653 + MER82 DNA MER2_type 24 651 -2 207 261 43 0 chr13 60520590 60520636 -41352533 + MER5A DNA MER1_type 65 112 -77 1123 322 48 8 chr13 60520778 60521278 -41351891 + ERVL LTR ERVL 2825 3389 -1900 404 326 7 37 chr13 60521749 60521884 -41351285 - L2 LINE L2 -3 3269 3139 189 121 0 0 chr13 60523003 60523036 -41350133 + (CGG)n Simple_repeat Simple_repeat 2 34 0 803 201 15 20 chr13 60524141 60524345 -41348824 - L1M4 LINE L1 -2052 4094 3892 * 927 204 101 29 chr13 60524342 60524394 -41348775 + L1M4 LINE L1 3557 3604 -2542 2282 77 17 20 chr13 60524394 60524693 -41348476 + AluSx SINE Alu 1 298 -14 927 204 101 29 chr13 60524693 60524948 -41348221 + L1M4 LINE L1 3604 3886 -2260 212 318 159 17 chr13 60525070 60525309 -41347860 - L2 LINE L2 -16 3297 3025 1368 323 63 26 chr13 60526413 60527132 -41346037 + L2 LINE L2 1690 2434 -880 350 268 12 0 chr13 60527211 60527293 -41345876 + MIR SINE MIR 47 129 -133 1350 184 4 31 chr13 60527295 60527551 -41345618 - AluJo SINE Alu -3 309 61 323 316 41 0 chr13 60527582 60527680 -41345489 + MIR SINE MIR 161 262 0 652 322 32 28 chr13 60527685 60527968 -41345201 + L2 LINE L2 2474 2757 -557 1820 120 62 0 chr13 60528003 60528295 -41344874 - L1PA13 LINE L1 -3 6160 5851 626 277 164 34 chr13 60528328 60528736 -41344433 + L2 LINE L2 2853 3313 0 521 333 106 75 chr13 60528767 60529009 -41344160 - L3 LINE CR1 -69 1508 1275 746 178 0 8 chr13 60529009 60529138 -41344031 - FLAM_A SINE Alu -5 128 1 521 333 106 75 chr13 60529138 60529526 -41343643 - L3 LINE CR1 -302 1275 858 23 33 0 0 chr13 60529793 60529823 -41343346 + AT_rich Low_complexity Low_complexity 1 30 0 1594 177 30 13 chr13 60530185 60530484 -41342685 + AluJo SINE Alu 1 304 -8 21 0 0 0 chr13 60530665 60530686 -41342483 + AT_rich Low_complexity Low_complexity 1 21 0 218 336 39 29 chr13 60531980 60532084 -41341085 - L2 LINE L2 -1 3271 3167 2644 39 0 3 chr13 60532277 60532586 -41340583 - AluY SINE Alu -3 308 1 329 159 58 0 chr13 60533750 60533819 -41339350 - L1MA9 LINE L1 -5 6307 6235 1800 174 6 13 chr13 60534168 60534479 -41338690 - AluJb SINE Alu -3 309 1 257 222 28 0 chr13 60535037 60535109 -41338060 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 248 196 0 0 chr13 60535109 60535165 -41338004 - L1MC4 LINE L1 -1339 6703 6648 381 75 0 0 chr13 60536374 60536427 -41336742 + (TATG)n Simple_repeat Simple_repeat 4 56 0 1838 161 0 4 chr13 60536434 60536707 -41336462 - AluSx SINE Alu -24 288 17 1096 220 167 5 chr13 60536756 60537167 -41336002 - L1MA9 LINE L1 -38 6274 5789 207 0 0 0 chr13 60537167 60537190 -41335979 + (TG)n Simple_repeat Simple_repeat 2 24 0 1096 220 167 5 chr13 60537190 60537209 -41335960 - L1MA9 LINE L1 -523 5789 5774 549 189 0 0 chr13 60537209 60537299 -41335870 - 5S rRNA rRNA -31 90 1 1362 143 36 75 chr13 60537299 60537402 -41335767 - L1MA9 LINE L1 -527 5785 5680 2453 65 0 0 chr13 60537402 60537696 -41335473 - AluY SINE Alu -17 294 1 1362 143 36 75 chr13 60537696 60537927 -41335242 - L1MA9 LINE L1 -632 5680 5464 2165 117 0 0 chr13 60537952 60538242 -41334927 - AluSx SINE Alu -22 290 1 828 195 174 5 chr13 60538772 60538962 -41334207 - MER58A DNA MER1_type 0 224 3 540 291 26 7 chr13 60539054 60539205 -41333964 - MIR SINE MIR -105 157 4 391 315 25 30 chr13 60539614 60539811 -41333358 - L1ME LINE L1 -478 5643 5448 2137 128 0 0 chr13 60540798 60541094 -41332075 - AluSx SINE Alu -16 296 1 690 249 77 65 chr13 60541719 60542184 -41330985 - L1ME4a LINE L1 -168 5953 5483 300 305 0 0 chr13 60543236 60543318 -41329851 + CT-rich Low_complexity Low_complexity 1 82 0 2270 74 7 3 chr13 60543485 60543782 -41329387 - AluY SINE Alu -13 298 1 1694 187 0 17 chr13 60543871 60544165 -41329004 + AluJo SINE Alu 1 289 -23 459 0 0 0 chr13 60545223 60545274 -41327895 + (TCTTG)n Simple_repeat Simple_repeat 2 52 0 245 29 0 29 chr13 60545279 60545314 -41327855 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 208 355 40 8 chr13 60545394 60545518 -41327651 + L2 LINE L2 2943 3070 -202 598 199 87 0 chr13 60545589 60545750 -41327419 + MER104 DNA Tc2 6 180 0 254 269 115 31 chr13 60546003 60546133 -41327036 - MER20 DNA MER1_type -17 202 62 2357 86 3 0 chr13 60546230 60546531 -41326638 + AluSq SINE Alu 2 303 -10 360 284 99 96 chr13 60546569 60546651 -41326518 + L2 LINE L2 2846 2926 -387 1234 182 45 123 chr13 60546651 60547074 -41326095 - MLT1B LTR MaLR 0 390 1 360 284 99 96 chr13 60547074 60547182 -41325987 + L2 LINE L2 2926 3032 -281 2427 65 0 3 chr13 60547182 60547476 -41325693 + AluY SINE Alu 1 293 -18 360 284 99 96 chr13 60547476 60547689 -41325480 + L2 LINE L2 3032 3251 -62 583 257 205 0 chr13 60547754 60547925 -41325244 + MIR SINE MIR 49 254 -8 200 311 267 6 chr13 60548105 60548266 -41324903 - L2 LINE L2 -1029 2285 2083 719 229 15 27 chr13 60548778 60548963 -41324206 - MIR SINE MIR -56 152 15 2214 119 3 0 chr13 60548995 60549297 -41323872 - AluSx SINE Alu -9 303 1 1983 133 30 0 chr13 60549464 60549766 -41323403 - AluY SINE Alu 0 311 1 1075 90 0 0 chr13 60549766 60549900 -41323269 - AluY SINE Alu -177 134 1 1914 137 42 15 chr13 60550145 60550214 -41322955 - MER2 DNA MER2_type 0 344 278 1815 135 35 45 chr13 60550214 60550526 -41322643 + AluJo SINE Alu 1 309 -3 1914 137 42 15 chr13 60550526 60550791 -41322378 - MER2 DNA MER2_type -66 278 1 394 325 107 3 chr13 60551388 60551677 -41321492 - L1ME4a LINE L1 -236 5885 5567 289 320 57 33 chr13 60551678 60551800 -41321369 - L2 LINE L2 -1 3271 3147 22 80 0 0 chr13 60551929 60551979 -41321190 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr13 60552648 60552668 -41320501 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 334 234 75 0 chr13 60552757 60552851 -41320318 + CT-rich Low_complexity Low_complexity 2 102 0 371 267 170 12 chr13 60553904 60554069 -41319100 - MIR SINE MIR 0 262 72 1698 162 3 30 chr13 60554590 60554893 -41318276 - AluJo SINE Alu -6 306 12 257 334 11 17 chr13 60555248 60555369 -41317800 + MIR3 SINE MIR 2 121 -105 366 244 138 24 chr13 60556703 60556826 -41316343 + MIR SINE MIR 125 261 -1 327 275 127 35 chr13 60557054 60557283 -41315886 + L1MCc LINE L1 263 512 -5911 1339 242 120 32 chr13 60557391 60557866 -41315303 + L1MCc LINE L1 808 1324 -5099 * 2982 242 56 84 chr13 60557862 60560349 -41312820 + L1MCc LINE L1 1589 3953 -2988 495 269 0 0 chr13 60560347 60560477 -41312692 + L1MCc LINE L1 4905 5034 -1907 * 923 235 106 53 chr13 60560516 60560950 -41312219 + L1MC4 LINE L1 7575 8031 -11 1344 231 59 17 chr13 60561027 60561382 -41311787 + LTR40c LTR ERVL 96 465 0 222 374 0 0 chr13 60561570 60561669 -41311500 + CT-rich Low_complexity Low_complexity 2 100 0 855 261 54 5 chr13 60562354 60562576 -41310593 + MIR SINE MIR 5 237 -25 22 0 0 0 chr13 60563769 60563791 -41309378 + AT_rich Low_complexity Low_complexity 1 22 0 1074 229 4 33 chr13 60564877 60565050 -41308119 + MIR SINE MIR 5 171 -91 1184 171 59 5 chr13 60565050 60565272 -41307897 - MER46A DNA MER2_type 0 236 3 1074 229 4 33 chr13 60565272 60565342 -41307827 + MIR SINE MIR 171 241 -21 468 0 0 0 chr13 60565662 60565714 -41307455 + (TA)n Simple_repeat Simple_repeat 2 53 0 573 263 242 14 chr13 60566613 60566902 -41306267 + L3 LINE CR1 1221 1575 -2 327 289 0 12 chr13 60567822 60567905 -41305264 - L2 LINE L2 0 3272 3191 2027 98 4 0 chr13 60568599 60568874 -41304295 + AluSp SINE Alu 38 313 0 891 201 17 23 chr13 60570459 60570633 -41302536 + FAM SINE Alu 2 174 -1 1126 186 121 49 chr13 60570686 60570993 -41302176 - MER2 DNA MER2_type -16 329 1 261 306 126 9 chr13 60571246 60571357 -41301812 + L3 LINE CR1 466 589 -988 332 227 34 23 chr13 60571388 60571476 -41301693 - L1MC4 LINE L1 -1 8041 7953 2441 148 83 29 chr13 60571486 60571978 -41301191 - L1MC4 LINE L1 -146 7896 7378 412 202 45 0 chr13 60572030 60572119 -41301050 - L1MC4 LINE L1 -786 7256 7164 588 186 76 21 chr13 60572144 60572289 -41300880 - L1MC4 LINE L1 -935 7107 6955 1281 162 5 14 chr13 60572289 60572511 -41300658 - AluJo SINE Alu -86 226 7 240 183 87 78 chr13 60572517 60572632 -41300537 - HAL1 LINE L1 -1425 1082 967 15182 128 23 6 chr13 60572641 60574995 -41298174 + Tigger1 DNA MER2_type 24 2418 0 2492 80 0 0 chr13 60575074 60575385 -41297784 + AluY SINE Alu 1 311 0 428 174 0 0 chr13 60575895 60575964 -41297205 - MER58 DNA MER1_type -6 2414 2346 317 263 0 13 chr13 60575960 60576036 -41297133 - MER58 DNA MER1_type -119 96 22 * 1582 176 81 0 chr13 60576241 60576514 -41296655 - AluJo SINE Alu -17 295 1 646 193 0 50 chr13 60576595 60576735 -41296434 + FLAM_A SINE Alu 1 133 0 26 0 0 0 chr13 60576744 60576770 -41296399 + AT_rich Low_complexity Low_complexity 1 26 0 342 224 12 12 chr13 60578342 60578427 -41294742 - HsTC2 DNA Tc2 -1812 86 2 2191 117 0 7 chr13 60578472 60578780 -41294389 + AluSx SINE Alu 1 306 -6 881 331 89 25 chr13 60579387 60580080 -41293089 - L2 LINE L2 -5 3308 2565 1442 160 75 18 chr13 60580080 60580362 -41292807 + AluJo SINE Alu 1 298 -14 881 331 89 25 chr13 60580362 60580405 -41292764 - L2 LINE L2 -748 2565 2526 496 225 16 39 chr13 60580496 60580625 -41292544 + L1ME2 LINE L1 6029 6154 -10 241 233 124 2 chr13 60580635 60580730 -41292439 + L1ME2 LINE L1 6063 6166 0 254 234 33 33 chr13 60580882 60580972 -41292197 + MER5A DNA MER1_type 9 101 -77 231 182 0 36 chr13 60582456 60582511 -41290658 + L1MC4 LINE L1 6652 6704 -1338 253 132 0 0 chr13 60582612 60582650 -41290519 + AluSp SINE Alu 132 169 -134 1692 166 8 0 chr13 60582650 60582948 -41290221 + AluJb SINE Alu 18 317 0 23 0 0 0 chr13 60584287 60584310 -41288859 + AT_rich Low_complexity Low_complexity 1 23 0 15052 154 44 13 chr13 60584668 60585924 -41287245 - L1MA3 LINE L1 -1 7723 6508 1936 134 10 3 chr13 60585924 60586216 -41286953 - AluSx SINE Alu -18 294 1 15052 154 44 13 chr13 60586216 60589289 -41283880 - L1MA3 LINE L1 -1216 6508 3259 13993 132 67 10 chr13 60589285 60589363 -41283806 - L1MA3 LINE L1 -5176 2389 2317 * 2186 122 0 0 chr13 60589363 60589666 -41283503 - AluSg SINE Alu -7 303 1 2222 114 0 0 chr13 60589668 60589966 -41283203 - AluSx SINE Alu -14 298 1 13993 132 67 10 chr13 60589966 60592127 -41281042 - L1MA3 LINE L1 -5248 2317 19 2349 159 9 25 chr13 60592256 60592691 -41280478 - MSTA LTR MaLR 0 428 1 963 166 155 21 chr13 60592724 60592903 -41280266 - Charlie1 DNA MER1_type -1 2760 2606 2453 54 3 0 chr13 60592903 60593201 -41279968 - AluY SINE Alu -12 299 1 963 166 155 21 chr13 60593201 60593305 -41279864 - Charlie1 DNA MER1_type -155 2606 2439 387 276 61 0 chr13 60593393 60593491 -41279678 + L2 LINE L2 3168 3271 -1 411 253 33 0 chr13 60593781 60593872 -41279297 - MER5A DNA MER1_type -83 106 13 186 257 171 0 chr13 60594226 60594296 -41278873 + MIR SINE MIR 21 102 -160 743 129 0 24 chr13 60595323 60595447 -41277722 - L1MA2 LINE L1 -4 6300 6180 1975 139 3 0 chr13 60596615 60596909 -41276260 - AluSx SINE Alu -17 295 1 26 0 0 0 chr13 60596913 60596939 -41276230 + AT_rich Low_complexity Low_complexity 1 26 0 2356 107 42 14 chr13 60597775 60598129 -41275040 - THE1B LTR MaLR 0 364 1 405 102 0 0 chr13 60598663 60598722 -41274447 + (TG)n Simple_repeat Simple_repeat 1 59 0 2794 57 3 0 chr13 60599448 60599800 -41273369 - THE1A LTR MaLR 0 355 3 26 0 0 0 chr13 60599816 60599842 -41273327 + AT_rich Low_complexity Low_complexity 1 26 0 1821 166 0 3 chr13 60599842 60600132 -41273037 - AluJb SINE Alu -23 289 1 249 188 0 0 chr13 60600132 60600180 -41272989 - L1MB1 LINE L1 -64 6125 6078 1948 117 80 15 chr13 60600375 60600701 -41272468 + MER47A DNA MER2_type 20 366 0 1065 193 33 9 chr13 60602213 60602426 -41270743 + MER20 DNA MER1_type 1 218 -1 230 328 0 0 chr13 60602538 60602596 -41270573 - L2 LINE L2 -5 3267 3210 1153 219 108 20 chr13 60603204 60603510 -41269659 + MER2 DNA MER2_type 3 335 -10 232 130 0 72 chr13 60603539 60603608 -41269561 - L1ME4a LINE L1 -4 6117 6054 1986 145 30 3 chr13 60603637 60603941 -41269228 + AluJb SINE Alu 1 312 0 1090 83 0 0 chr13 60604069 60604202 -41268967 - AluSq/x SINE Alu -180 133 1 342 281 68 27 chr13 60604205 60604258 -41268911 - L1ME4a LINE L1 -236 5885 5836 1923 148 17 0 chr13 60604258 60604568 -41268601 - AluSx SINE Alu 0 312 1 342 281 68 27 chr13 60604568 60604660 -41268509 - L1ME4a LINE L1 -285 5836 5734 792 244 129 23 chr13 60604700 60605049 -41268120 - LTR16A LTR ERVL -5 445 60 584 258 31 6 chr13 60605132 60605291 -41267878 - L1ME4a LINE L1 -440 5681 5519 469 270 95 0 chr13 60605701 60605849 -41267320 - MIR SINE MIR -6 256 95 2090 113 0 13 chr13 60606109 60606409 -41266760 - AluSg SINE Alu -14 296 1 333 260 159 56 chr13 60606722 60607061 -41266108 + L1MC5 LINE L1 7319 7692 -269 1704 97 67 37 chr13 60607083 60607351 -41265818 - AluSg SINE Alu 0 310 35 1630 132 29 22 chr13 60607431 60607704 -41265465 + AluJo SINE Alu 30 304 -8 2322 62 10 10 chr13 60607705 60608009 -41265160 + AluY SINE Alu 1 304 -7 1802 100 25 0 chr13 60608009 60608299 -41264870 + AluSq SINE Alu 37 332 0 24 0 0 0 chr13 60608308 60608332 -41264837 + AT_rich Low_complexity Low_complexity 1 24 0 365 248 147 125 chr13 60609015 60609568 -41263601 - L1M2 LINE L1 -5580 1269 705 193 153 69 0 chr13 60612220 60612292 -41260877 + (TA)n Simple_repeat Simple_repeat 2 78 0 225 100 0 0 chr13 60613474 60613504 -41259665 - Alu SINE Alu -272 30 1 220 354 156 38 chr13 60613662 60613950 -41259219 + L2 LINE L2 2946 3267 -5 250 271 87 105 chr13 60614220 60614486 -41258683 - L2 LINE L2 0 3272 3012 567 233 63 63 chr13 60614625 60614831 -41258338 - L1ME2 LINE L1 -9 6155 5950 1855 138 26 45 chr13 60614896 60615207 -41257962 - AluSx SINE Alu -7 305 1 1454 226 7 0 chr13 60615569 60615848 -41257321 + AluJb SINE Alu 1 281 -31 204 40 0 0 chr13 60615853 60615878 -41257291 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 337 323 148 9 chr13 60615899 60616122 -41257047 - L1ME2 LINE L1 -482 5639 5386 200 157 314 0 chr13 60616663 60616733 -41256436 + L2 LINE L2 3222 3313 0 455 240 97 55 chr13 60617192 60617409 -41255760 + L3 LINE CR1 1246 1471 -106 275 214 151 48 chr13 60617521 60617647 -41255522 - MIR SINE MIR -122 140 2 1857 160 0 10 chr13 60617878 60618178 -41254991 - AluJo SINE Alu -15 297 1 648 128 12 0 chr13 60618675 60618794 -41254375 + FRAM SINE Alu 62 181 0 1648 293 176 38 chr13 60618951 60619822 -41253347 + L2 LINE L2 1956 2706 -607 2335 100 0 10 chr13 60619822 60620131 -41253038 - AluSp SINE Alu -7 306 1 1648 293 176 38 chr13 60620131 60620313 -41252856 + L2 LINE L2 2706 2862 -451 198 71 0 0 chr13 60620313 60620341 -41252828 + (TG)n Simple_repeat Simple_repeat 2 29 0 1648 293 176 38 chr13 60620341 60620459 -41252710 + L2 LINE L2 2862 3297 -16 1697 169 29 16 chr13 60621186 60621494 -41251675 - AluJo SINE Alu 0 312 1 373 278 43 29 chr13 60621552 60621707 -41251462 - MIR SINE MIR -39 169 13 219 268 186 31 chr13 60621991 60622088 -41251081 + L2 LINE L2 1949 2060 -1254 790 137 120 0 chr13 60623251 60623368 -41249801 - AluJb SINE Alu -180 132 2 2409 96 0 0 chr13 60623372 60623674 -41249495 - AluSc SINE Alu -7 302 1 2146 112 0 56 chr13 60624551 60624874 -41248295 - AluSx SINE Alu -7 305 1 265 229 95 19 chr13 60625157 60625262 -41247907 - MLT1J LTR MaLR -358 153 41 529 236 56 23 chr13 60625291 60625507 -41247662 - HAL1 LINE L1 -1452 1055 833 470 268 116 80 chr13 60625496 60625858 -41247311 - HAL1 LINE L1 -2131 376 2 * 396 0 0 0 chr13 60625861 60625905 -41247264 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr13 60626826 60626847 -41246322 + AT_rich Low_complexity Low_complexity 1 21 0 375 286 111 21 chr13 60627607 60627796 -41245373 - LTR33 LTR ERVL -306 215 10 2349 93 3 3 chr13 60628104 60628417 -41244752 - AluSq SINE Alu 0 313 1 477 0 0 0 chr13 60628884 60628937 -41244232 + (TA)n Simple_repeat Simple_repeat 2 54 0 1890 178 56 32 chr13 60630144 60630576 -41242593 + MLT1C LTR MaLR 16 457 -10 587 292 148 52 chr13 60630933 60631831 -41241338 - L1M4 LINE L1 -799 5347 4537 2342 82 0 20 chr13 60631831 60632135 -41241034 - AluY SINE Alu -13 298 1 587 292 148 52 chr13 60632135 60632615 -41240554 - L1M4 LINE L1 -1609 4537 4104 3029 48 6 14 chr13 60632615 60632973 -41240196 - THE1A LTR MaLR 0 355 1 587 292 148 52 chr13 60632973 60633187 -41239982 - L1M4 LINE L1 -2042 4104 3601 381 280 42 35 chr13 60633358 60633501 -41239668 - L2 LINE L2 -4 3309 3166 21 0 0 0 chr13 60633574 60633595 -41239574 + AT_rich Low_complexity Low_complexity 1 21 0 351 248 99 0 chr13 60634633 60634734 -41238435 + MIR SINE MIR 82 192 -70 1840 176 0 0 chr13 60635568 60635864 -41237305 - AluJb SINE Alu -15 297 2 201 326 111 35 chr13 60636139 60636283 -41236886 - MIR SINE MIR -50 212 58 23 0 0 0 chr13 60636571 60636594 -41236575 + AT_rich Low_complexity Low_complexity 1 23 0 2494 74 0 0 chr13 60636667 60636976 -41236193 - AluY SINE Alu -2 309 1 5791 101 13 55 chr13 60637089 60638012 -41235157 - L1MA2 LINE L1 0 6304 5421 23 33 0 0 chr13 60638631 60638661 -41234508 + AT_rich Low_complexity Low_complexity 1 30 0 2310 98 0 0 chr13 60638778 60639073 -41234096 - AluSq SINE Alu -18 295 1 716 82 148 16 chr13 60639444 60639566 -41233603 - MER85 DNA T2_type 0 139 2 507 218 10 0 chr13 60639868 60639969 -41233200 + Charlie1 DNA MER1_type 2654 2755 -6 241 329 198 13 chr13 60639975 60640273 -41232896 - L2 LINE L2 -525 2789 2437 2862 244 63 46 chr13 60640299 60641173 -41231996 - L1ME LINE L1 -4660 1420 510 2149 136 3 0 chr13 60641173 60641483 -41231686 + AluSx SINE Alu 1 311 -1 2862 244 63 46 chr13 60641483 60641997 -41231172 - L1ME LINE L1 -5570 510 6 203 376 93 25 chr13 60642063 60642385 -41230784 - L2 LINE L2 -927 2387 2044 7091 137 58 18 chr13 60643583 60644765 -41228404 - Tigger3b DNA MER2_type 0 1231 2 498 214 0 0 chr13 60645273 60645362 -41227807 + MER2 DNA MER2_type 1 89 -256 399 322 61 42 chr13 60645393 60645487 -41227682 - L1MC4a LINE L1 -1902 5906 5815 1933 83 4 0 chr13 60645487 60645728 -41227441 - AluSp SINE Alu -12 301 60 399 322 61 42 chr13 60645728 60645897 -41227272 - L1MC4a LINE L1 -1993 5815 5638 288 272 82 63 chr13 60646579 60646847 -41226322 + MLT1J LTR MaLR 111 383 -128 234 253 77 11 chr13 60646994 60647085 -41226084 - L1ME4a LINE L1 -1 6120 6024 2233 120 10 0 chr13 60648312 60648620 -41224549 - AluSx SINE Alu -1 311 1 24 32 0 0 chr13 60648698 60648729 -41224440 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr13 60649135 60649164 -41224005 + (CA)n Simple_repeat Simple_repeat 1 29 0 265 271 0 0 chr13 60649338 60649397 -41223772 + L2 LINE L2 3214 3272 0 242 260 31 62 chr13 60650644 60650740 -41222429 - L2 LINE L2 0 3313 3221 7137 28 5 0 chr13 60650889 60651716 -41221453 - L1PA4 LINE L1 -1 6154 5324 342 318 39 16 chr13 60652731 60652860 -41220309 + MER5A DNA MER1_type 26 157 -32 1685 174 4 4 chr13 60652861 60653126 -41220043 - AluJb SINE Alu -46 266 2 4726 92 30 1 chr13 60653153 60653824 -41219345 - L1PA10 LINE L1 -3 6165 5476 1964 81 11 0 chr13 60653824 60654093 -41219076 - L1PA7 LINE L1 0 6154 5880 2408 108 41 0 chr13 60654093 60654577 -41218592 - L1PA10 LINE L1 -682 5486 4986 197 314 14 14 chr13 60654609 60654679 -41218490 - L3 LINE CR1 -569 1008 939 2254 198 76 56 chr13 60654687 60654933 -41218236 - L1ME1 LINE L1 -8 6158 5918 429 109 0 0 chr13 60654933 60654997 -41218172 + (TA)n Simple_repeat Simple_repeat 2 65 0 2254 198 76 56 chr13 60654997 60655503 -41217666 - L1ME1 LINE L1 -248 5918 5391 616 204 29 68 chr13 60655660 60655866 -41217303 - LTR52 LTR ERVL -200 221 24 514 198 185 6 chr13 60656132 60656294 -41216875 - L1ME1 LINE L1 -743 5403 5213 871 118 16 0 chr13 60656302 60656429 -41216740 - AluSg/x SINE Alu -6 304 176 868 216 18 35 chr13 60656429 60656712 -41216457 - L1ME1 LINE L1 -957 5189 4912 3758 91 47 20 chr13 60656847 60657441 -41215728 - MER4B LTR ERV1 0 610 1 2076 88 7 43 chr13 60657487 60657792 -41215377 - AluSp SINE Alu -19 294 1 22 0 0 0 chr13 60657795 60657817 -41215352 + AT_rich Low_complexity Low_complexity 1 22 0 202 292 46 15 chr13 60657930 60657995 -41215174 - MIR SINE MIR -173 89 23 270 250 0 0 chr13 60658003 60658075 -41215094 + (TA)n Simple_repeat Simple_repeat 1 72 0 204 77 0 0 chr13 60658075 60658101 -41215068 + (CA)n Simple_repeat Simple_repeat 1 26 0 1661 137 76 14 chr13 60659132 60659409 -41213760 - AluJo SINE Alu -1 311 18 1733 139 121 27 chr13 60659409 60659740 -41213429 - THE1B LTR MaLR -2 362 1 21 0 0 0 chr13 60659774 60659795 -41213374 + AT_rich Low_complexity Low_complexity 1 21 0 1558 185 54 17 chr13 60659978 60660329 -41212840 - MLT1A1 LTR MaLR -1 364 1 2732 91 3 3 chr13 60661088 60661452 -41211717 + THE1B LTR MaLR 1 364 0 1930 169 40 25 chr13 60662688 60663228 -41209941 + MLT2A2 LTR ERVL 1 554 0 630 192 0 8 chr13 60663342 60663462 -41209707 - FLAM_A SINE Alu -4 138 20 555 292 62 24 chr13 60663792 60664001 -41209168 - MER58A DNA MER1_type -6 218 2 185 180 20 0 chr13 60664235 60664285 -41208884 + (TA)n Simple_repeat Simple_repeat 2 52 0 340 333 209 18 chr13 60664760 60665205 -41207964 + L2 LINE L2 225 754 -2560 1119 157 74 19 chr13 60665633 60665849 -41207320 - AluJo SINE Alu 0 312 85 2101 86 54 4 chr13 60668613 60668892 -41204277 - AluSc SINE Alu -16 293 1 2100 108 0 0 chr13 60669294 60669605 -41203564 + AluSg SINE Alu 1 311 0 248 371 10 10 chr13 60669806 60669937 -41203232 + MER5B DNA MER1_type 51 181 -8 249 278 105 11 chr13 60670011 60670202 -41202967 - MER102a DNA MER1_type -6 324 116 2477 92 19 32 chr13 60670471 60670840 -41202329 - THE1B LTR MaLR 0 364 1 35 54 0 14 chr13 60671489 60671532 -41201637 + AT_rich Low_complexity Low_complexity 1 44 -29 1510 185 51 11 chr13 60671532 60671808 -41201361 - AluJo SINE Alu -25 287 1 35 54 0 14 chr13 60671808 60671838 -41201331 + AT_rich Low_complexity Low_complexity 44 73 0 1643 167 68 3 chr13 60672129 60672465 -41200704 - L1MB7 LINE L1 0 6184 5827 1341 173 21 12 chr13 60672502 60672745 -41200424 - MER44D DNA MER2_type -20 585 469 5377 127 31 16 chr13 60672767 60673827 -41199342 - MER11B LTR ERVK -5 1066 1 2396 183 27 2 chr13 60673827 60674267 -41198902 - MER44D DNA MER2_type -238 467 17 854 164 93 0 chr13 60674278 60674461 -41198708 - L1MB7 LINE L1 -348 5830 5631 258 263 0 53 chr13 60676075 60676151 -41197018 + L2 LINE L2 3201 3272 0 313 244 51 13 chr13 60676820 60676898 -41196271 + MIR SINE MIR 105 185 -77 234 0 0 0 chr13 60677046 60677072 -41196097 + (TG)n Simple_repeat Simple_repeat 1 26 0 855 270 62 0 chr13 60679332 60679558 -41193611 - MIR SINE MIR 0 262 23 39 0 0 0 chr13 60680462 60680501 -41192668 + AT_rich Low_complexity Low_complexity 1 39 0 381 315 98 17 chr13 60680755 60681050 -41192119 - L1ME LINE L1 -322 5799 5481 24 0 0 0 chr13 60681077 60681101 -41192068 + AT_rich Low_complexity Low_complexity 1 24 0 471 280 70 33 chr13 60681535 60681749 -41191420 - MIR SINE MIR -34 228 7 16202 29 1 1 chr13 60682220 60684928 -41188241 - L1PA4 LINE L1 -3 6152 3446 1650 71 40 8 chr13 60684928 60685181 -41187988 - L1P LINE L1 -5885 261 1 23 0 0 0 chr13 60686283 60686306 -41186863 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 60686885 60686909 -41186260 + AT_rich Low_complexity Low_complexity 1 24 0 283 272 16 152 chr13 60687562 60687753 -41185416 + MIR SINE MIR 13 177 -85 369 186 0 0 chr13 60687913 60687983 -41185186 + MER116 DNA Mariner 11 80 0 226 297 0 10 chr13 60688555 60688656 -41184513 + MARNA DNA Mariner 281 380 -206 21 0 0 0 chr13 60688990 60689011 -41184158 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 60690077 60690105 -41183064 + AT_rich Low_complexity Low_complexity 1 28 0 2566 50 0 0 chr13 60690462 60690762 -41182407 + AluY SINE Alu 1 300 -11 37 62 0 0 chr13 60690917 60690982 -41182187 + AT_rich Low_complexity Low_complexity 1 65 0 3713 129 11 35 chr13 60691869 60692360 -41180809 - L1MC1 LINE L1 -23 6310 5808 2456 77 0 3 chr13 60692360 60692659 -41180510 - AluSx SINE Alu -14 298 1 3713 129 11 35 chr13 60692659 60692796 -41180373 - L1MC1 LINE L1 -525 5808 5696 2001 151 125 8 chr13 60692796 60693179 -41179990 + MSTA LTR MaLR 1 428 0 3713 129 11 35 chr13 60693179 60693200 -41179969 - L1MC1 LINE L1 -637 5696 5676 5792 80 49 18 chr13 60693334 60694568 -41178601 + L1PB1 LINE L1 4885 6151 0 1878 189 14 14 chr13 60695178 60695543 -41177626 - MLT1A1 LTR MaLR 0 365 1 216 0 0 0 chr13 60698798 60698822 -41174347 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 36159 36 5 1 chr13 60699132 60705261 -41167908 - L1PA3 LINE L1 0 6155 3 214 346 85 0 chr13 60705554 60705684 -41167485 + MIR3 SINE MIR 64 204 -4 30 27 0 0 chr13 60706140 60706177 -41166992 + AT_rich Low_complexity Low_complexity 1 37 0 2270 95 3 0 chr13 60706301 60706596 -41166573 + AluY SINE Alu 1 296 -15 282 56 0 0 chr13 60706600 60706636 -41166533 + (TG)n Simple_repeat Simple_repeat 2 37 0 1862 119 0 48 chr13 60706959 60707253 -41165916 - AluSc SINE Alu -23 286 7 27 73 0 0 chr13 60707293 60707348 -41165821 + AT_rich Low_complexity Low_complexity 1 55 0 339 255 52 46 chr13 60707984 60708137 -41165032 - L2 LINE L2 -1 3312 3159 259 250 59 0 chr13 60708342 60708410 -41164759 + L2 LINE L2 3201 3272 0 1347 178 27 57 chr13 60708469 60708863 -41164306 + MLT1C LTR MaLR 1 354 -36 24 24 0 24 chr13 60708935 60708957 -41164212 + AT_rich Low_complexity Low_complexity 1 23 -18 2772 22 0 0 chr13 60708957 60709268 -41163901 + AluY SINE Alu 1 311 0 24 24 0 24 chr13 60709268 60709287 -41163882 + AT_rich Low_complexity Low_complexity 23 41 0 294 171 0 171 chr13 60709287 60709398 -41163771 - L1MD2 LINE L1 -12 6347 6256 1116 180 63 0 chr13 60710404 60710610 -41162559 - MER20 DNA MER1_type 0 219 1 893 178 7 7 chr13 60711796 60711942 -41161227 + FRAM SINE Alu 1 146 -30 8904 140 21 4 chr13 60712917 60715324 -41157845 + L1PA13 LINE L1 3687 6130 -33 415 252 17 0 chr13 60716187 60716321 -41156848 - L2 LINE L2 -15 3298 3186 182 315 119 41 chr13 60716471 60716690 -41156479 - L2 LINE L2 -152 3161 2926 540 140 37 0 chr13 60716820 60716927 -41156242 + L1MB8 LINE L1 6067 6177 -1 1232 215 110 58 chr13 60717014 60717497 -41155672 + MLT2B1 LTR ERVL 1 508 -12 291 298 69 0 chr13 60717505 60717636 -41155533 - L2 LINE L2 -696 2618 2479 220 351 90 0 chr13 60717791 60717902 -41155267 + L3 LINE CR1 236 356 -1221 284 258 123 26 chr13 60717970 60718125 -41155044 + Charlie8 DNA MER1_type 37 206 -2211 27 29 0 0 chr13 60718195 60718229 -41154940 + AT_rich Low_complexity Low_complexity 1 34 0 535 343 89 39 chr13 60718260 60718674 -41154495 + L3 LINE CR1 436 870 -707 610 199 27 86 chr13 60719180 60719401 -41153768 + MLT1D LTR MaLR 1 208 -297 1329 186 4 15 chr13 60719532 60719796 -41153373 + MLT1D LTR MaLR 245 505 0 882 264 43 17 chr13 60719798 60720033 -41153136 + MIR SINE MIR 16 256 -6 301 269 65 65 chr13 60720074 60720275 -41152894 + L3 LINE CR1 1161 1361 -216 1614 146 28 11 chr13 60720288 60720575 -41152594 - AluJo SINE Alu -1 311 20 1853 148 6 31 chr13 60721867 60722185 -41150984 - AluJo SINE Alu 0 312 3 450 192 30 0 chr13 60722201 60722300 -41150869 - MER5A DNA MER1_type -77 112 11 2416 97 0 0 chr13 60722639 60722947 -41150222 - AluY SINE Alu -3 308 1 188 33 0 33 chr13 60723609 60723639 -41149530 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 2131 96 4 7 chr13 60723639 60723920 -41149249 - AluSx SINE Alu -32 280 1 4472 166 47 2 chr13 60723938 60724975 -41148194 - L1PB4 LINE L1 -10 6146 5073 2706 99 5 0 chr13 60724976 60725349 -41147820 + THE1C LTR MaLR 1 375 0 588 138 0 0 chr13 60725406 60725500 -41147669 + L1PB3 LINE L1 6061 6154 0 1608 192 127 45 chr13 60725512 60726002 -41147167 - L1MB5 LINE L1 -9 6165 5636 272 242 16 0 chr13 60727217 60727279 -41145890 + MLT1F LTR MaLR 1 63 -479 359 285 49 0 chr13 60727349 60727493 -41145676 + MLT1F-int LTR MaLR 456 606 -765 536 286 29 128 chr13 60727676 60728428 -41144741 + MLT1F-int LTR MaLR 693 1370 -1 2004 238 92 12 chr13 60728429 60728929 -41144240 + MLT1F LTR MaLR 1 540 -2 222 37 0 0 chr13 60729278 60729305 -41143864 + (TG)n Simple_repeat Simple_repeat 2 28 0 307 291 39 10 chr13 60729500 60729603 -41143566 - MIR SINE MIR -56 152 47 28 0 0 0 chr13 60729758 60729786 -41143383 + AT_rich Low_complexity Low_complexity 1 28 0 1871 142 59 56 chr13 60730380 60730754 -41142415 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr13 60732520 60732541 -41140628 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 60732853 60732874 -41140295 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 60733239 60733262 -41139907 + AT_rich Low_complexity Low_complexity 1 23 0 1015 211 48 0 chr13 60734581 60734789 -41138380 + MER20 DNA MER1_type 1 218 -1 180 0 0 0 chr13 60737697 60737717 -41135452 + (T)n Simple_repeat Simple_repeat 1 20 0 220 345 168 8 chr13 60737925 60738044 -41135125 - L2 LINE L2 -6 3266 3129 24 0 0 0 chr13 60738673 60738697 -41134472 + AT_rich Low_complexity Low_complexity 1 24 0 268 255 64 43 chr13 60739237 60739331 -41133838 + MIR SINE MIR 21 116 -146 234 340 75 21 chr13 60739366 60739460 -41133709 - L2 LINE L2 -14 3258 3160 374 223 58 39 chr13 60739488 60739591 -41133578 + MIR SINE MIR 158 262 0 23 54 0 0 chr13 60743232 60743269 -41129900 + AT_rich Low_complexity Low_complexity 1 37 0 354 335 108 0 chr13 60743897 60744082 -41129087 - MIR SINE MIR -38 224 20 427 246 268 0 chr13 60744290 60744428 -41128741 - MER5A DNA MER1_type -1 188 14 183 42 0 0 chr13 60745388 60745412 -41127757 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1129 215 159 10 chr13 60745547 60745956 -41127213 - L1ME1 LINE L1 -5 6161 5692 863 227 69 30 chr13 60745957 60746401 -41126768 - L1ME1 LINE L1 -642 5520 5061 255 250 39 67 chr13 60746426 60746530 -41126639 - L2 LINE L2 -173 3140 3040 2851 139 48 27 chr13 60746667 60747548 -41125621 + L1P5 LINE L1 4887 5775 -381 706 63 0 36 chr13 60747556 60747667 -41125502 + (TA)n Simple_repeat Simple_repeat 1 107 0 317 319 35 7 chr13 60748388 60748532 -41124637 - MIR3 SINE MIR -7 201 54 2571 55 0 0 chr13 60749096 60749406 -41123763 - AluY SINE Alu -1 310 1 2399 66 0 0 chr13 60749683 60749993 -41123176 - AluY SINE Alu 0 310 1 344 263 0 25 chr13 60750271 60750351 -41122818 - MER5A DNA MER1_type 0 189 112 5585 148 33 27 chr13 60751271 60752336 -41120833 - MER11C LTR ERVK 0 1071 1 228 111 0 0 chr13 60752550 60752586 -41120583 + (T)n Simple_repeat Simple_repeat 1 36 0 7787 21 0 0 chr13 60752586 60753619 -41119550 - L1PA3 LINE L1 0 6155 5123 331 301 104 31 chr13 60753848 60753986 -41119183 + MIR SINE MIR 85 238 -24 1879 168 100 54 chr13 60753986 60754468 -41118701 - MLT1D LTR MaLR 0 505 2 331 301 104 31 chr13 60754468 60754492 -41118677 + MIR SINE MIR 238 259 -3 1809 154 3 10 chr13 60754791 60755083 -41118086 - AluSx SINE Alu -22 290 1 1014 175 4 68 chr13 60755459 60755693 -41117476 + MER20 DNA MER1_type 1 219 0 298 284 213 0 chr13 60756780 60756935 -41116234 + MIR SINE MIR 73 260 -2 802 281 49 56 chr13 60757714 60757830 -41115339 + L2 LINE L2 2048 2163 -1151 2479 60 0 35 chr13 60757830 60758146 -41115023 - AluY SINE Alu -6 305 1 802 281 49 56 chr13 60758146 60758353 -41114816 + L2 LINE L2 2163 2369 -945 1819 73 30 4 chr13 60759698 60759932 -41113237 + AluSq SINE Alu 66 305 -8 454 244 85 24 chr13 60761777 60761941 -41111228 - MIR SINE MIR -74 188 15 650 81 11 0 chr13 60762442 60762529 -41110640 - AluY SINE Alu -18 293 206 374 256 214 14 chr13 60762990 60763205 -41109964 - L2 LINE L2 -3 3310 3053 1668 211 3 3 chr13 60763425 60763723 -41109446 - AluJo SINE Alu -14 298 1 196 250 56 28 chr13 60763787 60763859 -41109310 - MIR SINE MIR -112 150 77 2266 104 0 0 chr13 60764724 60765031 -41108138 - AluSq SINE Alu -6 307 1 1981 249 50 19 chr13 60765124 60765747 -41107422 - L1ME3A LINE L1 -6 6164 5523 266 321 171 5 chr13 60766022 60766215 -41106954 - L3 LINE CR1 -22 1555 1331 1054 83 0 0 chr13 60767068 60767212 -41105957 - L1PA10 LINE L1 -236 5938 5795 1469 115 31 0 chr13 60767212 60767438 -41105731 + L1PA10 LINE L1 5931 6163 -5 214 175 0 25 chr13 60768255 60768295 -41104874 + CT-rich Low_complexity Low_complexity 6 44 0 270 246 131 33 chr13 60768974 60769096 -41104073 + MIR SINE MIR 123 256 -6 2036 108 73 0 chr13 60769544 60769830 -41103339 + AluSp SINE Alu 1 307 -6 382 264 78 30 chr13 60770752 60770983 -41102186 - L1MC4 LINE L1 -31 8011 7770 256 102 41 0 chr13 60773406 60773455 -41099714 + CT-rich Low_complexity Low_complexity 2 52 0 251 296 0 42 chr13 60775187 60775258 -41097911 - L3 LINE CR1 -29 1548 1481 2042 113 3 0 chr13 60778296 60778610 -41094559 + AluSx SINE Alu 1 315 0 24 32 0 0 chr13 60780827 60780858 -41092311 + AT_rich Low_complexity Low_complexity 1 31 0 2209 102 0 0 chr13 60781286 60781569 -41091600 - AluSx SINE Alu -9 303 21 882 150 0 0 chr13 60782635 60782802 -41090367 - FLAM_C SINE Alu 0 167 1 734 186 21 46 chr13 60783506 60783700 -41089469 + MER20 DNA MER1_type 30 218 -1 222 271 43 0 chr13 60784538 60784608 -41088561 + MIR SINE MIR 189 261 -1 1176 224 114 101 chr13 60786005 60787055 -41086114 - L2 LINE L2 -2 3311 2254 287 65 22 0 chr13 60788335 60788381 -41084788 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 357 298 46 84 chr13 60790162 60790424 -41082745 + L2 LINE L2 3019 3270 -2 2269 96 0 17 chr13 60792177 60792478 -41080691 + AluSg SINE Alu 2 297 -13 267 192 39 26 chr13 60793380 60793458 -41079711 + MER116 DNA Mariner 1 79 -1 317 259 22 30 chr13 60794085 60794220 -41078949 + L1MC/D LINE L1 5436 5569 -601 404 61 37 12 chr13 60794227 60794309 -41078860 + (TA)n Simple_repeat Simple_repeat 1 84 0 255 320 117 18 chr13 60794312 60794534 -41078635 + L1MC/D LINE L1 5612 5855 -1953 25 31 0 0 chr13 60794932 60794964 -41078205 + AT_rich Low_complexity Low_complexity 1 32 0 383 236 103 18 chr13 60796417 60796582 -41076587 - L1ME4a LINE L1 0 6121 5943 26 0 0 0 chr13 60797489 60797515 -41075654 + AT_rich Low_complexity Low_complexity 1 26 0 1899 166 0 3 chr13 60797517 60797806 -41075363 - AluJb SINE Alu -24 288 1 636 240 49 93 chr13 60798065 60798311 -41074858 - MIR SINE MIR -22 240 6 181 374 22 11 chr13 60798807 60798898 -41074271 - L2 LINE L2 -660 2654 2563 362 260 82 41 chr13 60799652 60799798 -41073371 - MIR SINE MIR -22 240 89 352 261 42 143 chr13 60800112 60800545 -41072624 - L2 LINE L2 -586 2728 2340 291 389 8 8 chr13 60802228 60802359 -41070810 - L3b LINE CR1 -244 1339 1209 1694 174 108 42 chr13 60802927 60803353 -41069816 - MSTB2 LTR MaLR -3 454 1 21 71 0 0 chr13 60805163 60805205 -41067964 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr13 60807393 60807421 -41065748 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr13 60809919 60809940 -41063229 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr13 60810628 60810650 -41062519 + AT_rich Low_complexity Low_complexity 1 22 0 913 297 145 19 chr13 60813499 60814118 -41059051 + L2 LINE L2 2614 3310 -3 402 274 170 35 chr13 60814520 60814837 -41058332 - MLT1H LTR MaLR 0 549 190 244 153 83 0 chr13 60815766 60815838 -41057331 + (TA)n Simple_repeat Simple_repeat 2 79 0 2233 125 3 0 chr13 60815861 60816172 -41056997 - AluSx SINE Alu 0 312 1 236 187 209 44 chr13 60817427 60817518 -41055651 - Charlie8 DNA MER1_type -2129 288 183 227 65 0 0 chr13 60818264 60818295 -41054874 + Alu SINE Alu 1 31 -272 1758 74 5 0 chr13 60818296 60818512 -41054657 + AluSg/x SINE Alu 82 298 -12 490 302 107 0 chr13 60819852 60820001 -41053168 - AluJo SINE Alu -26 286 122 217 298 18 79 chr13 60820763 60820877 -41052292 + L3 LINE CR1 587 693 -884 1948 167 15 0 chr13 60821332 60821662 -41051507 + MER1B DNA MER1_type 3 337 0 2456 71 3 0 chr13 60821994 60822290 -41050879 + AluSg SINE Alu 2 298 -12 3568 86 16 4 chr13 60823310 60823674 -41049495 - L1PB1 LINE L1 0 6151 5778 372 22 0 0 chr13 60823674 60823719 -41049450 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 3568 86 16 4 chr13 60823719 60823864 -41049305 - L1PB1 LINE L1 -373 5778 5636 2629 102 2 2 chr13 60823864 60824265 -41048904 - L1P5 LINE L1 -360 5791 5391 186 43 0 0 chr13 60824730 60824753 -41048416 + (T)n Simple_repeat Simple_repeat 1 23 0 994 132 0 13 chr13 60825229 60825381 -41047788 + AluSg/x SINE Alu 152 301 -11 388 188 62 10 chr13 60825967 60826063 -41047106 - MER58C DNA MER1_type -1 214 114 348 261 46 27 chr13 60826162 60826442 -41046727 - MLT1F LTR MaLR -243 352 21 217 319 0 0 chr13 60826576 60826648 -41046521 + (TA)n Simple_repeat Simple_repeat 2 73 0 1467 140 12 8 chr13 60827499 60827749 -41045420 + L1PA15 LINE L1 5912 6162 -3 1793 193 19 8 chr13 60827835 60828197 -41044972 + MER47A DNA MER2_type 1 366 0 382 226 39 0 chr13 60834018 60834120 -41039049 - L1MA10 LINE L1 -11 6323 6218 550 315 69 39 chr13 60834654 60835016 -41038153 - L1ME4a LINE L1 -253 5868 5496 2374 273 124 17 chr13 60835429 60836683 -41036486 - L2 LINE L2 -9 3304 1920 490 302 107 0 chr13 60837399 60837548 -41035621 - AluJo SINE Alu -26 286 122 217 298 18 79 chr13 60838310 60838424 -41034745 + L3 LINE CR1 587 693 -884 1948 167 15 0 chr13 60838879 60839209 -41033960 + MER1B DNA MER1_type 3 337 0 2347 82 10 3 chr13 60839541 60839844 -41033325 + AluSg SINE Alu 2 306 -4 2399 67 10 0 chr13 60841691 60841988 -41031181 - AluY SINE Alu -11 300 1 538 213 49 0 chr13 60842221 60842343 -41030826 - MLT1D LTR MaLR -377 128 1 598 274 49 23 chr13 60842626 60842889 -41030280 + Charlie7 DNA MER1_type 41 310 -2302 1973 247 161 44 chr13 60842904 60843954 -41029215 + Charlie7 DNA MER1_type 706 1975 -637 2229 92 0 0 chr13 60843954 60844246 -41028923 + AluSc SINE Alu 1 292 -17 1973 247 161 44 chr13 60844246 60844658 -41028511 + Charlie7 DNA MER1_type 1975 2338 -274 463 281 35 59 chr13 60845348 60845551 -41027618 + MIR SINE MIR 63 260 -2 399 41 0 0 chr13 60846489 60846538 -41026631 + (TC)n Simple_repeat Simple_repeat 2 50 0 722 242 139 87 chr13 60846626 60846842 -41026327 - L2 LINE L2 -1 3312 3068 4389 145 34 0 chr13 60846842 60847600 -41025569 - L1MA3 LINE L1 0 6305 5522 722 242 139 87 chr13 60847600 60847751 -41025418 - L2 LINE L2 -245 3068 2926 830 218 229 7 chr13 60847769 60848192 -41024977 - MER69 DNA AcHobo 0 2526 2010 * 1575 264 117 6 chr13 60848190 60848701 -41024468 - MER69 DNA AcHobo -658 568 1 22 0 0 0 chr13 60849003 60849025 -41024144 + AT_rich Low_complexity Low_complexity 1 22 0 1783 159 10 16 chr13 60849057 60849371 -41023798 - AluJb SINE Alu 0 312 1 643 224 140 33 chr13 60849612 60849826 -41023343 + MIR SINE MIR 1 237 -25 1709 136 15 36 chr13 60849853 60850185 -41022984 - L1MA7 LINE L1 0 6291 5967 195 303 119 18 chr13 60850885 60850994 -41022175 - MIR SINE MIR -77 185 66 338 324 88 7 chr13 60851657 60851793 -41021376 + MIR3 SINE MIR 9 155 -53 27 62 0 0 chr13 60851887 60851935 -41021234 + AT_rich Low_complexity Low_complexity 1 48 0 593 282 84 1 chr13 60852020 60852242 -41020927 - MIR SINE MIR 0 262 23 536 294 81 36 chr13 60853119 60853340 -41019829 - MIR SINE MIR -19 243 13 223 318 68 40 chr13 60854255 60854403 -41018766 - MER5B DNA MER1_type -1 177 26 378 0 0 0 chr13 60854580 60854622 -41018547 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr13 60855376 60855398 -41017771 + AT_rich Low_complexity Low_complexity 1 22 0 186 305 85 0 chr13 60857511 60857593 -41015576 - MIR SINE MIR -66 142 54 191 290 175 60 chr13 60858051 60858268 -41014901 + MIR SINE MIR 20 261 -1 2166 75 17 3 chr13 60859215 60859509 -41013660 - AluY SINE Alu -13 298 1 288 307 47 55 chr13 60859531 60859658 -41013511 - L2 LINE L2 -10 3262 3137 317 239 17 51 chr13 60859848 60859927 -41013242 + L2 LINE L2 2461 2536 -778 7097 123 38 30 chr13 60859927 60860528 -41012641 - Tigger3b DNA MER2_type -1797 1231 636 1837 168 13 10 chr13 60860528 60860838 -41012331 - AluJb SINE Alu -1 311 1 7097 123 38 30 chr13 60860838 60861458 -41011711 - Tigger3b DNA MER2_type -2392 636 1 317 239 17 51 chr13 60861458 60861495 -41011674 + L2 LINE L2 2536 2573 -741 381 335 88 22 chr13 60861527 60861799 -41011370 + L2 LINE L2 2814 3103 -210 631 184 37 68 chr13 60861897 60862060 -41011109 - MLT2F LTR ERVL -135 528 371 259 231 0 0 chr13 60862114 60862166 -41011003 + L2 LINE L2 3258 3309 -4 449 233 110 55 chr13 60863557 60863720 -41009449 - MIR SINE MIR -80 182 11 1128 165 28 125 chr13 60864062 60864265 -41008904 - MER4C LTR ERV1 -3 695 474 2006 146 43 30 chr13 60864265 60864635 -41008534 + THE1C LTR MaLR 1 375 0 1128 165 28 125 chr13 60864635 60865009 -41008160 - MER4C LTR ERV1 -224 474 1 732 260 98 76 chr13 60865062 60865431 -41007738 + MLT1J2 LTR MaLR 19 395 -55 389 347 27 36 chr13 60866046 60866268 -41006901 - L2 LINE L2 -807 2507 2288 281 285 50 18 chr13 60868107 60868229 -41004940 - MIR3 SINE MIR -45 163 39 394 357 70 0 chr13 60868247 60868418 -41004751 + MIR SINE MIR 80 262 0 209 281 56 56 chr13 60868613 60868702 -41004467 - MIR SINE MIR -78 130 42 618 167 0 0 chr13 60868852 60868954 -41004215 - AluS SINE Alu -211 102 1 416 280 19 19 chr13 60869192 60869349 -41003820 + L1MEc LINE L1 44 200 -6196 253 118 20 20 chr13 60869329 60869380 -41003789 + L1MEc LINE L1 1061 1111 -5285 * 228 294 72 20 chr13 60869404 60869557 -41003612 + L1M4 LINE L1 1187 1347 -5037 * 1970 207 50 33 chr13 60869540 60870199 -41002970 + L1M4 LINE L1 4283 5084 -1298 963 270 86 43 chr13 60870201 60870721 -41002448 + MLT1F LTR MaLR 1 530 -12 488 287 23 0 chr13 60870727 60870901 -41002268 + L1M4 LINE L1 5111 5288 -1094 * 1015 184 26 18 chr13 60870891 60871119 -41002050 + L1ME2 LINE L1 5766 5995 -169 22 35 0 0 chr13 60872114 60872143 -41001026 + AT_rich Low_complexity Low_complexity 1 29 0 231 300 89 0 chr13 60873790 60873880 -40999289 + HAL1b LINE L1 693 790 -558 734 247 29 6 chr13 60874038 60874212 -40998957 - MER97c DNA MER1_type? -912 178 1 22 0 0 0 chr13 60874620 60874642 -40998527 + AT_rich Low_complexity Low_complexity 1 22 0 1706 191 0 0 chr13 60875025 60875313 -40997856 + AluJb SINE Alu 2 289 -23 924 237 23 27 chr13 60875400 60875662 -40997507 - MIR SINE MIR -1 261 1 215 209 0 0 chr13 60876217 60876260 -40996909 + (CA)n Simple_repeat Simple_repeat 2 44 0 2036 118 50 68 chr13 60876298 60876680 -40996489 + THE1C LTR MaLR 1 375 0 860 226 67 0 chr13 60880646 60880841 -40992328 + MIR SINE MIR 24 231 -31 1738 136 37 20 chr13 60881735 60882030 -40991139 - AluSx SINE Alu -12 300 1 332 293 28 9 chr13 60882069 60882175 -40990994 - L1MCc LINE L1 -5659 764 657 2124 113 55 22 chr13 60882420 60882783 -40990386 + THE1C LTR MaLR 1 375 0 1208 230 82 22 chr13 60882829 60883185 -40989984 - L1MCc LINE L1 -5996 427 51 743 203 28 0 chr13 60883566 60883709 -40989460 + MIR SINE MIR 35 181 -81 257 220 51 17 chr13 60884106 60884165 -40989004 - L2 LINE L2 -4 3309 3249 2042 116 3 20 chr13 60884521 60884822 -40988347 - AluSx SINE Alu -14 298 3 297 288 64 32 chr13 60885151 60885276 -40987893 + MIR SINE MIR 32 160 -102 1994 141 6 28 chr13 60885282 60885413 -40987756 - AluSx SINE Alu 0 343 211 4878 92 6 1 chr13 60885413 60886066 -40987103 + PABL_A LTR ERV1 5 660 0 1994 141 6 28 chr13 60886066 60886284 -40986885 - AluSx SINE Alu -132 211 1 289 304 125 0 chr13 60886862 60886974 -40986195 + MER91B DNA MER1_type 4 129 -61 392 261 0 0 chr13 60886989 60887081 -40986088 + MER91B DNA MER1_type 88 179 -11 513 195 0 71 chr13 60887327 60887440 -40985729 - AluJb SINE Alu -207 105 1 467 311 176 30 chr13 60887662 60888898 -40984271 + HAL1 LINE L1 1092 2507 0 214 250 139 19 chr13 60889702 60889810 -40983359 - MIR SINE MIR -93 169 49 455 195 42 8 chr13 60890264 60890382 -40982787 + L1MA9 LINE L1 6191 6312 0 251 321 38 0 chr13 60890578 60890684 -40982485 - MIR SINE MIR -16 246 137 2084 113 24 3 chr13 60891192 60891484 -40981685 - AluSg SINE Alu -12 298 1 1726 231 46 20 chr13 60891707 60892162 -40981007 + MLT1C LTR MaLR 1 467 0 238 363 86 30 chr13 60892218 60892452 -40980717 - MIR SINE MIR -13 249 3 328 301 52 58 chr13 60893086 60893259 -40979910 - MIR SINE MIR -56 206 35 5429 165 51 12 chr13 60893494 60895411 -40977758 + L1PA13 LINE L1 4151 6137 -26 198 272 142 77 chr13 60895412 60895581 -40977588 - MIR SINE MIR -70 192 13 386 196 151 95 chr13 60897531 60897710 -40975459 + MIR SINE MIR 74 262 0 3969 174 33 12 chr13 60897740 60899364 -40973805 + L1MA7 LINE L1 4531 6290 -1 2816 103 17 2 chr13 60899714 60900122 -40973047 - L1PA10 LINE L1 -99 6069 5656 1630 88 13 0 chr13 60900138 60900364 -40972805 + L1PA8A LINE L1 5304 5532 -599 213 183 0 33 chr13 60901541 60901601 -40971568 + (TTTAA)n Simple_repeat Simple_repeat 4 61 0 2096 117 0 3 chr13 60901843 60902256 -40970913 + AluSx SINE Alu 1 412 0 371 312 82 60 chr13 60902284 60902545 -40970624 + L1MEd LINE L1 602 856 -5308 1576 170 13 48 chr13 60902545 60902857 -40970312 + AluJo SINE Alu 3 303 -9 2304 106 0 0 chr13 60902861 60903154 -40970015 + AluSc SINE Alu 1 293 -16 371 312 82 60 chr13 60903154 60903362 -40969807 + L1MEd LINE L1 858 1114 -5050 415 277 143 34 chr13 60903369 60903820 -40969349 + L1MEd LINE L1 1096 1647 -4519 180 348 0 29 chr13 60903822 60903891 -40969278 - L2 LINE L2 -661 2653 2587 21 0 0 0 chr13 60904878 60904899 -40968270 + AT_rich Low_complexity Low_complexity 1 21 0 360 176 0 0 chr13 60905289 60905357 -40967812 + (TA)n Simple_repeat Simple_repeat 1 68 0 181 264 55 77 chr13 60905628 60905719 -40967450 - L2 LINE L2 -15 3298 3210 440 108 15 0 chr13 60905995 60906060 -40967109 - MADE1 DNA Mariner 0 80 15 275 300 56 44 chr13 60906075 60906255 -40966914 + MIR SINE MIR 79 260 -2 302 303 2 0 chr13 60906262 60906356 -40966813 - MIR SINE MIR -38 170 75 480 274 76 0 chr13 60906370 60906607 -40966562 + MER113 DNA MER1_type? 3 257 -264 650 124 23 31 chr13 60906931 60907060 -40966109 + L1MA8 LINE L1 6158 6285 -6 34 24 0 0 chr13 60908010 60908051 -40965118 + AT_rich Low_complexity Low_complexity 1 41 0 308 251 50 53 chr13 60909261 60909483 -40963686 + L1M4 LINE L1 3866 4158 -1988 2063 181 21 18 chr13 60909493 60909597 -40963572 + MER1B DNA MER1_type 1 103 -2609 2030 144 85 15 chr13 60909597 60909937 -40963232 + THE1B LTR MaLR 1 364 0 2063 181 21 18 chr13 60909937 60910170 -40962999 + MER1B DNA MER1_type 103 339 0 726 260 103 28 chr13 60910209 60910605 -40962564 + L1M4 LINE L1 4195 4620 -1526 2503 177 65 48 chr13 60910681 60911224 -40961945 + MLT2B3 LTR ERVL 3 554 0 288 286 107 29 chr13 60911278 60911484 -40961685 + L1M4 LINE L1 4757 4978 -1168 2351 243 72 45 chr13 60911509 60912374 -40960795 + L1MC4 LINE L1 7155 8042 0 1169 287 97 26 chr13 60912561 60913203 -40959966 + HAL1 LINE L1 54 740 -1767 730 269 122 35 chr13 60913285 60913883 -40959286 + HAL1 LINE L1 893 1542 -965 200 154 96 0 chr13 60913922 60913974 -40959195 + MIR SINE MIR 172 228 -34 237 273 116 70 chr13 60914497 60914739 -40958430 + L1ME LINE L1 4109 4361 -1785 674 227 49 6 chr13 60915044 60915207 -40957962 + MLT1A1 LTR MaLR 196 365 0 348 302 120 27 chr13 60915225 60915450 -40957719 + L1ME LINE L1 5390 5635 -531 230 276 0 0 chr13 60915566 60915624 -40957545 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 70 0 0 chr13 60915740 60915783 -40957386 + AT_rich Low_complexity Low_complexity 1 43 0 199 304 76 22 chr13 60916315 60916407 -40956762 - L2 LINE L2 -16 3256 3160 1023 301 71 31 chr13 60917200 60917679 -40955490 + MLT1J LTR MaLR 13 510 -1 432 211 141 28 chr13 60917830 60917972 -40955197 + MIR SINE MIR 99 256 -6 1687 161 7 33 chr13 60918611 60918915 -40954254 - AluJo SINE Alu -16 296 1 33 43 0 0 chr13 60918935 60918982 -40954187 + AT_rich Low_complexity Low_complexity 1 47 0 34 42 0 0 chr13 60919062 60919110 -40954059 + AT_rich Low_complexity Low_complexity 1 48 0 2129 132 41 11 chr13 60919116 60919480 -40953689 - L1PB4 LINE L1 0 6156 5782 264 292 0 0 chr13 60919480 60919576 -40953593 + (TA)n Simple_repeat Simple_repeat 1 96 0 228 114 45 0 chr13 60919611 60919655 -40953514 + L1MC4 LINE L1 6658 6703 -1339 195 184 0 0 chr13 60919658 60919696 -40953473 + (TA)n Simple_repeat Simple_repeat 1 38 0 1528 238 162 60 chr13 60920894 60921217 -40951952 - L1MC4a LINE L1 -790 7018 6729 420 20 0 0 chr13 60921217 60921266 -40951903 + (TA)n Simple_repeat Simple_repeat 1 49 0 1528 238 162 60 chr13 60921266 60921560 -40951609 - L1MC4a LINE L1 -1079 6729 6338 890 277 122 66 chr13 60922239 60922801 -40950368 - L2 LINE L2 0 3313 2715 3180 250 84 94 chr13 60922802 60923822 -40949347 + L2 LINE L2 806 1808 -1506 2090 131 3 10 chr13 60923822 60924136 -40949033 + AluSp SINE Alu 1 312 -1 3180 250 84 94 chr13 60924136 60924590 -40948579 + L2 LINE L2 1808 2265 -1049 628 276 23 59 chr13 60924590 60924811 -40948358 + L2 LINE L2 2482 2694 -620 375 183 204 63 chr13 60924855 60924997 -40948172 - L2 LINE L2 -733 2581 2420 244 319 35 0 chr13 60924997 60925113 -40948056 + L1ME4a LINE L1 5506 5625 -496 433 282 45 63 chr13 60925618 60925813 -40947356 + MIR SINE MIR 27 216 -46 8252 42 4 4 chr13 60926849 60927883 -40945286 - L1P LINE L1 -3772 2374 1341 19879 30 0 0 chr13 60927883 60931057 -40942112 + L1PA3 LINE L1 2978 6155 0 197 307 200 0 chr13 60931166 60931241 -40941928 + MIR3 SINE MIR 96 185 -23 1930 276 100 44 chr13 60931397 60932638 -40940531 - HAL1 LINE L1 -723 1784 475 410 332 103 10 chr13 60933020 60933330 -40939839 - MLT1J2 LTR MaLR -30 420 82 478 258 113 0 chr13 60934083 60934207 -40938962 - AluJo SINE Alu -174 138 1 629 273 138 26 chr13 60934681 60934816 -40938353 + MIR SINE MIR 3 121 -141 2537 59 0 0 chr13 60934816 60935121 -40938048 + AluY SINE Alu 1 305 -6 629 273 138 26 chr13 60935121 60935216 -40937953 + MIR SINE MIR 121 259 -3 557 340 115 21 chr13 60935217 60935784 -40937385 - L2 LINE L2 -796 2518 1899 211 300 64 36 chr13 60936369 60936479 -40936690 - MIR SINE MIR -75 133 21 194 157 0 20 chr13 60936729 60936780 -40936389 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr13 60936818 60936840 -40936329 + AT_rich Low_complexity Low_complexity 1 22 0 1646 159 0 29 chr13 60936840 60937148 -40936021 - L1MC1 LINE L1 -5 6328 6030 442 299 80 15 chr13 60937164 60937438 -40935731 + L1MC1 LINE L1 5706 5997 -124 217 196 87 0 chr13 60937767 60937813 -40935356 + L2 LINE L2 3264 3313 0 1971 182 6 0 chr13 60938126 60938472 -40934697 + MER7A DNA MER2_type 1 346 0 189 94 0 0 chr13 60939416 60939448 -40933721 + (TCTG)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr13 60939962 60939985 -40933184 + AT_rich Low_complexity Low_complexity 1 23 0 243 88 0 0 chr13 60940042 60940076 -40933093 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 82 0 0 chr13 60940467 60940516 -40932653 + AT_rich Low_complexity Low_complexity 1 49 0 232 339 0 0 chr13 60941047 60941109 -40932060 - L2 LINE L2 -5 3267 3206 288 368 56 8 chr13 60942451 60942576 -40930593 - L2 LINE L2 -31 3241 3111 22 56 0 0 chr13 60943168 60943204 -40929965 + AT_rich Low_complexity Low_complexity 1 36 0 2645 49 0 0 chr13 60943515 60943821 -40929348 + AluY SINE Alu 1 306 -5 1563 208 78 46 chr13 60944704 60945165 -40928004 - L1MC4 LINE L1 -356 7686 7211 345 172 71 0 chr13 60945170 60945269 -40927900 + L1MC4 LINE L1 7726 7831 -211 1254 331 167 12 chr13 60945542 60946648 -40926521 - L2 LINE L2 -474 2840 1563 245 294 0 0 chr13 60946929 60946980 -40926189 + MER5A DNA MER1_type 26 76 -113 384 273 58 52 chr13 60947090 60947244 -40925925 + MIR SINE MIR 54 208 -54 262 227 103 10 chr13 60948044 60948141 -40925028 + L1M4 LINE L1 3755 3860 -2286 408 288 88 36 chr13 60948287 60948537 -40924632 + L1M4 LINE L1 4286 4548 -1598 561 253 66 73 chr13 60948821 60949094 -40924075 - MLT1I LTR MaLR -16 393 123 811 232 125 26 chr13 60949188 60949533 -40923636 + HAL1 LINE L1 2129 2507 0 28 48 0 0 chr13 60949826 60949868 -40923301 + AT_rich Low_complexity Low_complexity 1 42 0 568 298 134 17 chr13 60950795 60951154 -40922015 + HAL1b LINE L1 102 502 -846 1486 250 23 18 chr13 60952246 60952642 -40920527 + MLT1C LTR MaLR 70 467 0 312 336 181 39 chr13 60952688 60952947 -40920222 + L2 LINE L2 2966 3261 -11 2003 103 4 0 chr13 60953184 60953456 -40919713 - AluSc SINE Alu -2 307 35 685 293 39 39 chr13 60953523 60953834 -40919335 - Charlie8 DNA MER1_type -2054 363 53 253 234 140 28 chr13 60954209 60954316 -40918853 - L2 LINE L2 0 3313 3195 245 269 240 0 chr13 60955118 60955222 -40917947 - MIR SINE MIR -17 245 117 23 0 0 0 chr13 60955333 60955356 -40917813 + AT_rich Low_complexity Low_complexity 1 23 0 700 197 0 0 chr13 60955361 60955483 -40917686 + FLAM_C SINE Alu 2 123 -10 184 398 51 10 chr13 60955483 60955581 -40917588 - MIR SINE MIR -155 107 6 25 31 0 0 chr13 60956927 60956959 -40916210 + AT_rich Low_complexity Low_complexity 1 32 0 357 296 102 57 chr13 60956988 60957425 -40915744 - L1ME LINE L1 -350 5771 5318 1375 158 56 8 chr13 60957544 60957810 -40915359 - L1MB2 LINE L1 -7 6164 5886 307 276 75 45 chr13 60957965 60958233 -40914936 - L1ME LINE L1 -1114 5032 4757 496 309 125 21 chr13 60958241 60958446 -40914723 - L1ME LINE L1 -1466 4680 4498 1903 219 0 3 chr13 60958446 60958812 -40914357 - MLT1A1 LTR MaLR 0 365 1 496 309 125 21 chr13 60958812 60958943 -40914226 - L1ME LINE L1 -1648 4498 4309 271 301 11 11 chr13 60959302 60959395 -40913774 + LTR16C LTR ERVL 295 387 -104 282 122 61 0 chr13 60959402 60959451 -40913718 - MLT2B2 LTR ERVL -5 510 459 360 185 23 29 chr13 60959456 60959629 -40913540 + (TA)n Simple_repeat Simple_repeat 2 173 0 21 0 0 0 chr13 60960539 60960560 -40912609 + AT_rich Low_complexity Low_complexity 1 21 0 609 198 56 16 chr13 60960565 60960691 -40912478 + FLAM_C SINE Alu 2 132 -1 769 292 72 19 chr13 60960730 60961298 -40911871 - L1ME LINE L1 -2274 3872 3275 1068 289 100 21 chr13 60961300 60962301 -40910868 - L1ME LINE L1 -2918 3228 2149 2087 208 116 12 chr13 60962496 60963335 -40909834 - L1MB8 LINE L1 -1 6177 5122 21 36 0 0 chr13 60963819 60963847 -40909322 + AT_rich Low_complexity Low_complexity 1 28 0 399 41 0 0 chr13 60964036 60964085 -40909084 + (TG)n Simple_repeat Simple_repeat 2 50 0 556 258 30 0 chr13 60964356 60964488 -40908681 - MLT1E LTR MaLR -406 187 52 379 296 9 0 chr13 60964808 60964916 -40908253 - MLT1E2 LTR MaLR 0 626 518 207 0 0 0 chr13 60965986 60966009 -40907160 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 249 276 57 89 chr13 60966635 60966758 -40906411 + L2 LINE L2 3190 3308 -5 367 282 194 35 chr13 60967866 60968093 -40905076 - L3 LINE CR1 -7 1570 1308 377 133 0 0 chr13 60968529 60968589 -40904580 - L1PB1 LINE L1 -8 6143 6084 450 65 0 0 chr13 60968590 60968652 -40904517 - L1PB1 LINE L1 -123 6028 5967 378 287 63 36 chr13 60969325 60969548 -40903621 - HAL1 LINE L1 -66 2441 2213 312 273 188 18 chr13 60969550 60969715 -40903454 - HAL1 LINE L1 -336 2171 1979 331 200 24 24 chr13 60969868 60969953 -40903216 - HAL1 LINE L1 -742 1765 1681 182 240 20 0 chr13 60970004 60970054 -40903115 - L2 LINE L2 0 3313 3263 370 315 94 0 chr13 60970063 60970190 -40902979 + L2 LINE L2 2678 2816 -498 795 325 55 12 chr13 60970245 60970571 -40902598 + L2 LINE L2 2964 3303 -10 293 313 113 68 chr13 60970692 60971107 -40902062 + L2 LINE L2 2831 3264 -8 188 304 206 11 chr13 60971468 60971560 -40901609 - MIR SINE MIR -27 235 126 9691 195 25 16 chr13 60971629 60974587 -40898582 + L1PA15 LINE L1 3160 6163 -2 322 285 15 44 chr13 60974603 60974740 -40898429 - L1MB8 LINE L1 -1269 4877 4745 182 239 0 30 chr13 60974774 60974841 -40898328 + CT-rich Low_complexity Low_complexity 2 66 0 658 271 79 28 chr13 60974850 60975167 -40898002 - L1MB8 LINE L1 -1430 4716 4384 45 45 0 0 chr13 60975170 60975236 -40897933 + AT_rich Low_complexity Low_complexity 1 66 0 405 258 17 33 chr13 60975337 60975457 -40897712 + L2 LINE L2 3196 3313 0 317 299 26 0 chr13 60975482 60975559 -40897610 + MIR SINE MIR 1 79 -183 328 310 86 0 chr13 60975626 60975742 -40897427 - MIR SINE MIR -88 174 49 462 276 77 9 chr13 60976249 60976470 -40896699 - L1MB8 LINE L1 -1779 4367 4132 15205 104 27 15 chr13 60976472 60978715 -40894454 - Charlie3 DNA MER1_type -4 2706 436 1798 178 21 0 chr13 60978710 60978997 -40894172 - Charlie3 DNA MER1_type -2417 293 1 * 323 261 137 12 chr13 60979104 60979351 -40893818 - L1MB8 LINE L1 -2166 3980 3684 1135 159 0 0 chr13 60980479 60980678 -40892491 + AluSq SINE Alu 113 311 0 412 257 30 0 chr13 60980690 60980791 -40892378 - MIR SINE MIR -89 173 70 31 26 0 0 chr13 60981145 60981183 -40891986 + AT_rich Low_complexity Low_complexity 1 38 0 1190 162 8 34 chr13 60981268 60981502 -40891667 - AluJo SINE Alu 0 312 85 320 317 138 0 chr13 60981723 60981846 -40891323 + MIR3 SINE MIR 21 160 -48 182 304 120 40 chr13 60983634 60983759 -40889410 + L2 LINE L2 3179 3313 0 1796 135 7 11 chr13 60983963 60984267 -40888902 + AluSx SINE Alu 18 312 0 431 264 161 66 chr13 60985302 60985544 -40887625 + Charlie8 DNA MER1_type 1 265 -2152 1756 212 70 2 chr13 60985796 60986193 -40886976 - MSTB LTR MaLR 0 426 3 2070 129 0 29 chr13 60986239 60986550 -40886619 - AluSx SINE Alu -10 302 1 284 284 159 0 chr13 60986698 60986786 -40886383 - MIR SINE MIR -153 109 8 553 315 163 28 chr13 60986879 60987346 -40885823 + L2 LINE L2 2443 2972 -342 180 0 0 0 chr13 60988953 60988973 -40884196 + (CA)n Simple_repeat Simple_repeat 1 20 0 1288 204 94 31 chr13 60988979 60989298 -40883871 - MER2 DNA MER2_type -6 339 1 3289 132 64 74 chr13 60989485 60990278 -40882891 - LTR1 LTR ERV1 0 785 1 309 194 0 16 chr13 60991109 60991171 -40881998 - MIR3 SINE MIR -1 207 147 192 358 127 30 chr13 60991114 60991248 -40881921 - L3b LINE CR1 -2 1581 1435 * 401 271 83 14 chr13 60991603 60991747 -40881422 - MIR SINE MIR -87 175 22 203 386 80 11 chr13 60992110 60992286 -40880883 - L3b LINE CR1 -19 1564 1377 1726 207 20 17 chr13 60994162 60994520 -40878649 + MLT1A2 LTR MaLR 11 369 -5 22 35 0 0 chr13 60994775 60994804 -40878365 + AT_rich Low_complexity Low_complexity 1 29 0 291 28 0 0 chr13 60995373 60995409 -40877760 + (TG)n Simple_repeat Simple_repeat 2 37 0 745 331 91 16 chr13 60995537 60995921 -40877248 + L2 LINE L2 1506 1918 -1396 930 212 19 60 chr13 60995977 60996361 -40876808 - L1MA9 LINE L1 -10 6324 5959 211 219 109 16 chr13 60996362 60996426 -40876743 + L2 LINE L2 1959 2028 -1286 674 309 96 6 chr13 60996464 60996778 -40876391 + L2 LINE L2 2018 2359 -955 716 298 82 7 chr13 60996882 60997164 -40876005 + L2 LINE L2 2290 2592 -722 399 145 0 0 chr13 60997203 60997272 -40875897 - L1MC2 LINE L1 -18 6326 6258 192 231 141 26 chr13 60998520 60998598 -40874571 - L2 LINE L2 0 3272 3186 364 134 60 0 chr13 60998944 60999078 -40874091 + (TA)n Simple_repeat Simple_repeat 2 143 0 194 269 19 0 chr13 60999829 60999881 -40873288 - MIR SINE MIR -69 139 87 285 315 81 0 chr13 60999897 61000008 -40873161 - L2 LINE L2 -40 3273 3154 21 0 0 0 chr13 61001197 61001218 -40871951 + AT_rich Low_complexity Low_complexity 1 21 0 561 294 52 4 chr13 61001365 61001596 -40871573 - L1ME2 LINE L1 -9 6155 5914 1444 217 13 3 chr13 61001696 61002000 -40871169 - L1ME2 LINE L1 -510 5656 5350 315 163 0 0 chr13 61002001 61002081 -40871088 + CT-rich Low_complexity Low_complexity 1 80 0 875 222 128 27 chr13 61002081 61002413 -40870756 - L1ME2 LINE L1 -789 5357 5004 262 215 13 13 chr13 61002413 61002492 -40870677 - L1ME2 LINE L1 -2227 3919 3841 329 306 108 5 chr13 61002527 61002713 -40870456 - L1ME2 LINE L1 -2677 3469 3265 * 377 215 58 16 chr13 61002702 61002823 -40870346 - L1ME2 LINE L1 -3461 2685 2560 * 1109 130 26 96 chr13 61002802 61003072 -40870097 - L1MA9 LINE L1 0 6312 6062 257 237 246 0 chr13 61003100 61003214 -40869955 - L1ME2 LINE L1 -3580 2566 2425 186 43 0 0 chr13 61003664 61003687 -40869482 + (CA)n Simple_repeat Simple_repeat 2 24 0 2154 102 10 0 chr13 61004718 61005011 -40868158 + AluSq SINE Alu 1 296 -17 309 332 57 76 chr13 61005062 61005324 -40867845 + L2 LINE L2 2937 3193 -79 22 35 0 0 chr13 61005372 61005401 -40867768 + AT_rich Low_complexity Low_complexity 1 29 0 203 308 0 0 chr13 61005808 61005860 -40867309 - L2 LINE L2 -4 3268 3217 222 262 0 16 chr13 61007295 61007356 -40865813 + L2 LINE L2 3213 3272 0 1009 199 63 5 chr13 61008002 61008208 -40864961 - MER58A DNA MER1_type -6 218 1 770 197 42 36 chr13 61009156 61009349 -40863820 - L1MC3 LINE L1 -888 6897 6704 22 35 0 0 chr13 61011829 61011858 -40861311 + AT_rich Low_complexity Low_complexity 1 29 0 337 303 82 0 chr13 61012289 61012561 -40860608 + L1ME LINE L1 5531 5837 -284 279 173 0 0 chr13 61012631 61012683 -40860486 + (TG)n Simple_repeat Simple_repeat 2 53 0 45 55 0 0 chr13 61012746 61012819 -40860350 + AT_rich Low_complexity Low_complexity 1 73 0 371 299 103 20 chr13 61014604 61014945 -40858224 - L1ME4a LINE L1 -233 5888 5520 23 68 0 0 chr13 61015983 61016027 -40857142 + AT_rich Low_complexity Low_complexity 1 44 0 189 250 83 17 chr13 61016718 61016778 -40856391 - MIR SINE MIR -3 259 196 464 250 40 0 chr13 61016822 61016946 -40856223 - MIR SINE MIR -55 207 79 1319 226 86 18 chr13 61018219 61018555 -40854614 - MLT1A2 LTR MaLR -15 359 1 303 344 58 32 chr13 61020029 61020218 -40852951 + L1ME LINE L1 22 215 -5855 1845 161 37 11 chr13 61020389 61020744 -40852425 - MLT1A1 LTR MaLR -1 364 1 440 184 68 0 chr13 61022257 61022360 -40850809 + L1MA9 LINE L1 6171 6280 -32 568 143 8 79 chr13 61023244 61023370 -40849799 + L1MA2 LINE L1 17 133 -7432 * 13911 158 42 15 chr13 61023368 61027924 -40845245 + L1MA2 LINE L1 1849 6584 -1139 2138 82 10 7 chr13 61027924 61028216 -40844953 + AluY SINE Alu 1 293 -18 13911 158 42 15 chr13 61028216 61029385 -40843784 + L1MA2 LINE L1 6584 7720 -3 278 172 35 17 chr13 61029587 61029645 -40843524 - Tigger5 DNA MER2_type -3 2320 2262 349 241 38 13 chr13 61029716 61029795 -40843374 - Tigger5 DNA MER2_type -2242 81 1 2090 113 7 7 chr13 61030993 61031293 -40841876 + AluSp SINE Alu 1 300 -13 2069 198 13 5 chr13 61031424 61031813 -40841356 + MSTD LTR MaLR 5 396 0 921 319 82 52 chr13 61032062 61032322 -40840847 + L1MEd LINE L1 10 261 -5858 2032 126 60 20 chr13 61032322 61032670 -40840499 - THE1B LTR MaLR -2 362 1 921 319 82 52 chr13 61032670 61033274 -40839895 + L1MEd LINE L1 261 900 -5219 6296 220 69 12 chr13 61033394 61035185 -40837984 - L1 LINE L1 -2275 5290 3395 900 135 0 104 chr13 61035194 61035254 -40837915 - L1PA15 LINE L1 -2 6163 6098 2460 68 0 0 chr13 61035254 61035565 -40837604 - AluY SINE Alu 0 311 1 900 135 0 104 chr13 61035565 61035696 -40837473 - L1PA15 LINE L1 -67 6098 5992 2487 215 173 2 chr13 61035703 61036294 -40836875 - L1 LINE L1 -6858 707 16 1553 139 0 8 chr13 61036409 61036647 -40836522 - AluSg SINE Alu -14 296 61 2931 202 37 60 chr13 61036896 61037121 -40836048 + L1M1 LINE L1 3392 3620 -3945 2140 124 30 33 chr13 61037121 61037484 -40835685 + THE1B LTR MaLR 1 362 -2 11599 102 1 2 chr13 61037486 61039067 -40834102 + THE1B-int LTR MaLR 1 1580 0 2113 127 30 28 chr13 61039067 61039430 -40833739 + THE1B LTR MaLR 1 364 0 2931 202 37 60 chr13 61039430 61040167 -40833002 + L1M1 LINE L1 3619 4338 -3227 407 336 116 11 chr13 61040326 61040594 -40832575 + L1PA15-16 LINE L1 1268 1563 -5286 * 4074 251 39 37 chr13 61040580 61040838 -40832331 + L1PB4 LINE L1 690 946 -5257 1858 202 51 12 chr13 61040838 61041248 -40831921 - MSTB LTR MaLR 0 426 1 4074 251 39 37 chr13 61041248 61041692 -40831477 + L1PB4 LINE L1 946 1387 -4816 2181 80 0 40 chr13 61041692 61041993 -40831176 - AluY SINE Alu -22 289 1 4074 251 39 37 chr13 61041993 61042888 -40830281 + L1PB4 LINE L1 1387 2285 -3918 1299 151 43 19 chr13 61042889 61043147 -40830022 + MER21A LTR ERV1 1 264 -667 2453 226 31 24 chr13 61043152 61043704 -40829465 + MER21A LTR ERV1 376 931 0 11359 218 42 12 chr13 61043704 61044393 -40828776 + L1PB4 LINE L1 2282 2949 -3254 2404 66 0 3 chr13 61044393 61044697 -40828472 + AluY SINE Alu 1 303 -8 11359 218 42 12 chr13 61044697 61046883 -40826286 + L1PB4 LINE L1 2949 5243 -960 1085 156 0 0 chr13 61046942 61047121 -40826048 - L1P LINE L1 -1407 4739 4561 * 2473 184 58 6 chr13 61047119 61047689 -40825480 + L1PB4 LINE L1 5257 5847 -366 * 5441 129 17 8 chr13 61047677 61048576 -40824593 - L1PA8 LINE L1 -1362 4784 3878 5732 115 21 10 chr13 61048576 61049341 -40823828 + L1PA8 LINE L1 4771 5562 -610 2530 102 6 0 chr13 61049341 61049694 -40823475 + THE1A LTR MaLR 1 355 0 5732 115 21 10 chr13 61049694 61050310 -40822859 + L1PA8 LINE L1 5562 6170 -2 4953 123 33 2 chr13 61050310 61051101 -40822068 + L1PA11 LINE L1 5359 6173 -1 2037 172 10 3 chr13 61051107 61051491 -40821678 + L1PB4 LINE L1 5826 6212 -1 21 36 0 0 chr13 61052648 61052676 -40820493 + AT_rich Low_complexity Low_complexity 1 28 0 279 0 0 0 chr13 61053593 61053624 -40819545 + (TG)n Simple_repeat Simple_repeat 2 32 0 393 261 192 8 chr13 61053980 61054110 -40819059 + MER5A DNA MER1_type 36 189 0 4842 185 31 18 chr13 61054365 61056032 -40817137 - L1MA9 LINE L1 -47 6265 4621 1417 149 86 52 chr13 61056032 61056394 -40816775 - THE1C LTR MaLR -1 374 1 9474 132 12 36 chr13 61056394 61058011 -40815158 - THE1C-int LTR MaLR 0 1580 3 1593 174 58 25 chr13 61058013 61058376 -40814793 - THE1C LTR MaLR 0 375 1 4842 185 31 18 chr13 61058376 61058410 -40814759 - L1MA9 LINE L1 -1691 4621 4536 338 227 70 139 chr13 61058412 61058685 -40814484 - L1MDb LINE L1 -5380 703 450 269 339 35 9 chr13 61058760 61058875 -40814294 - L1MDb LINE L1 -5621 449 332 417 278 37 25 chr13 61059373 61059535 -40813634 - L1MDb LINE L1 -5906 164 1 1876 149 0 10 chr13 61059737 61060025 -40813144 + AluSx SINE Alu 1 285 -27 273 300 48 60 chr13 61060094 61060578 -40812591 - L1MEd LINE L1 -4866 1253 776 2078 111 0 75 chr13 61060843 61061176 -40811993 - AluSx SINE Alu -2 310 3 2114 91 7 0 chr13 61062099 61062375 -40810794 + AluSp SINE Alu 1 278 -35 249 33 0 0 chr13 61062376 61062406 -40810763 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 432 0 0 0 chr13 61062405 61062453 -40810716 + (CA)n Simple_repeat Simple_repeat 1 48 0 425 279 37 21 chr13 61065037 61065208 -40807961 - MIR SINE MIR -61 147 30 2098 110 7 10 chr13 61065295 61065594 -40807575 + AluSx SINE Alu 1 298 -14 1633 106 0 0 chr13 61065748 61065974 -40807195 - AluSg/x SINE Alu 0 312 87 541 187 27 35 chr13 61065974 61066221 -40806948 + CT-rich Low_complexity Low_complexity 10 479 0 253 339 61 12 chr13 61066262 61066427 -40806742 + L1M4 LINE L1 3969 4141 -2005 498 244 203 0 chr13 61066503 61066626 -40806543 + Tigger3(Golem) DNA MER2_type 1 148 -2881 4534 181 56 12 chr13 61066646 61068386 -40804783 + L1MA7 LINE L1 4283 6104 -187 1819 182 37 0 chr13 61068399 61068723 -40804446 - MER2 DNA MER2_type -7 338 3 687 193 51 0 chr13 61068723 61068899 -40804270 + L1MA7 LINE L1 6101 6285 -6 28 29 0 0 chr13 61069115 61069150 -40804019 + AT_rich Low_complexity Low_complexity 1 35 0 3024 221 12 3 chr13 61069644 61070291 -40802878 + MER82 DNA MER2_type 1 653 0 1772 162 78 3 chr13 61070359 61070717 -40802452 - L1MB5 LINE L1 0 6174 5790 22 0 0 0 chr13 61071236 61071258 -40801911 + AT_rich Low_complexity Low_complexity 1 22 0 715 188 0 0 chr13 61071261 61071389 -40801780 + L1PA16 LINE L1 6033 6160 -6 388 260 66 99 chr13 61071395 61071576 -40801593 - L1ME1 LINE L1 -11 6155 5981 1009 313 122 21 chr13 61072803 61073337 -40799832 - L3 LINE CR1 -75 1502 915 724 158 58 13 chr13 61073404 61073812 -40799357 + L1MB2 LINE L1 5450 6171 0 585 306 141 19 chr13 61073824 61074144 -40799025 - L3 LINE CR1 -787 790 432 478 282 25 12 chr13 61074308 61074471 -40798698 - MLT1H1 LTR MaLR -8 547 383 220 244 13 13 chr13 61075625 61075703 -40797466 + (TTA)n Simple_repeat Simple_repeat 3 80 0 928 146 82 9 chr13 61076346 61076565 -40796604 - L1MA8 LINE L1 -4 6287 6053 933 216 37 5 chr13 61078632 61078822 -40794347 + MER20 DNA MER1_type 24 219 0 8363 83 12 0 chr13 61079262 61081207 -40791962 - L1PA7 LINE L1 -10 6144 4185 1819 210 69 26 chr13 61081207 61082066 -40791103 - L1ME1 LINE L1 -613 5731 4845 12288 206 71 32 chr13 61082068 61087434 -40785735 + L1MA4 LINE L1 2 5523 -805 17322 194 86 9 chr13 61087438 61093478 -40779691 + L1PA16 LINE L1 2 6614 -255 1759 178 22 30 chr13 61093480 61093845 -40779324 + THE1B LTR MaLR 3 364 0 9327 117 75 29 chr13 61093845 61095355 -40777814 + THE1B-int LTR MaLR 1 1580 0 1555 202 32 14 chr13 61095356 61095703 -40777466 + THE1B LTR MaLR 7 359 -5 1136 175 35 4 chr13 61095720 61095948 -40777221 + L1PA16 LINE L1 6626 6860 -9 4048 167 40 29 chr13 61096463 61096893 -40776276 + L1MA4 LINE L1 5511 5956 -526 2718 29 0 0 chr13 61096893 61097204 -40775965 + AluYa5 SINE Alu 1 311 0 4048 167 40 29 chr13 61097204 61097607 -40775562 + L1MA4 LINE L1 5956 6353 -129 949 183 16 5 chr13 61097628 61097819 -40775350 - MSTB-int LTR MaLR -1458 193 1 2148 178 36 24 chr13 61097819 61098240 -40774929 - MSTB LTR MaLR 0 426 1 315 316 31 57 chr13 61098295 61098524 -40774645 - L1ME LINE L1 -551 5570 5352 257 301 66 54 chr13 61098528 61098920 -40774249 - L1ME LINE L1 -814 5332 4936 325 311 168 6 chr13 61099401 61099568 -40773601 - MIR3 SINE MIR -10 198 5 346 364 63 21 chr13 61101548 61101787 -40771382 + MIR SINE MIR 2 250 -12 530 68 0 0 chr13 61101805 61101878 -40771291 + L1PA5 LINE L1 6079 6151 -3 346 243 12 142 chr13 61102157 61102404 -40770765 + L2 LINE L2 2699 2913 -401 270 318 62 41 chr13 61102426 61102481 -40770688 + L2 LINE L2 3109 3161 -152 219 36 0 0 chr13 61102481 61102509 -40770660 + (TG)n Simple_repeat Simple_repeat 2 29 0 270 318 62 41 chr13 61102509 61102648 -40770521 + L2 LINE L2 3161 3307 -6 243 0 0 0 chr13 61102750 61102777 -40770392 + (CAA)n Simple_repeat Simple_repeat 2 28 0 184 323 65 73 chr13 61103983 61104107 -40769062 + L2 LINE L2 3150 3272 0 1880 214 58 40 chr13 61104326 61104827 -40768342 - MER67D LTR ERV1 -4 510 1 1623 192 0 0 chr13 61105475 61105751 -40767418 + 7SLRNA srpRNA srpRNA 1 276 -44 1121 279 128 43 chr13 61106617 61107148 -40766021 + MLT1G1 LTR MaLR 1 576 -19 1285 179 4 38 chr13 61107213 61107475 -40765694 + AluJb SINE Alu 1 253 -59 4992 169 26 19 chr13 61108109 61109568 -40763601 - L1PB4 LINE L1 -7 6149 4676 1438 191 0 59 chr13 61110190 61110391 -40762778 - AluJo SINE Alu -7 305 129 1572 201 0 7 chr13 61110391 61110690 -40762479 + AluSx SINE Alu 1 297 -15 740 160 0 0 chr13 61110693 61110812 -40762357 - AluJb SINE Alu -193 119 1 245 148 0 19 chr13 61111035 61111089 -40762080 + (TCTCTG)n Simple_repeat Simple_repeat 4 56 0 3142 193 51 9 chr13 61112196 61112864 -40760305 + L1MB1 LINE L1 5472 6167 -1 374 358 71 41 chr13 61113134 61113713 -40759456 - L2 LINE L2 -23 3290 2687 204 277 0 0 chr13 61114007 61114054 -40759115 - L2 LINE L2 -12 3301 3255 315 260 10 21 chr13 61114397 61114493 -40758676 - L1MC4 LINE L1 -1339 6703 6609 25 83 0 0 chr13 61115333 61115393 -40757776 + AT_rich Low_complexity Low_complexity 1 60 0 335 287 79 30 chr13 61116260 61116424 -40756745 + MER5B DNA MER1_type 1 172 -6 853 212 39 17 chr13 61116544 61116723 -40756446 + MER5A DNA MER1_type 6 188 -1 4832 123 59 50 chr13 61117536 61118492 -40754677 + L1MA4 LINE L1 5329 6292 -8 657 137 73 162 chr13 61119047 61119251 -40753918 - MER5A DNA MER1_type -3 186 1 541 224 0 0 chr13 61119715 61119813 -40753356 + MER81 DNA DNA 4 101 -13 319 316 53 43 chr13 61119832 61120041 -40753128 + L2 LINE L2 3094 3304 -9 451 305 80 59 chr13 61120360 61120449 -40752720 - MIR SINE MIR 0 262 176 2132 118 3 0 chr13 61120449 61120737 -40752432 + AluSx SINE Alu 3 291 -21 451 305 80 59 chr13 61120737 61120886 -40752283 - MIR SINE MIR -86 176 19 2136 157 48 85 chr13 61123340 61123823 -40749346 - MLT1C LTR MaLR -2 465 1 518 240 112 39 chr13 61125859 61126038 -40747131 - MIR SINE MIR 0 262 71 200 228 0 18 chr13 61126391 61126448 -40746721 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 428 222 34 0 chr13 61126700 61126817 -40746352 - MLT1E3 LTR MaLR -435 219 53 540 259 28 7 chr13 61126823 61126966 -40746203 - MLT2F LTR ERVL -517 146 1 24 0 0 0 chr13 61128171 61128195 -40744974 + AT_rich Low_complexity Low_complexity 1 24 0 333 258 305 0 chr13 61129383 61129573 -40743596 - MIR SINE MIR -14 248 1 230 313 0 0 chr13 61129774 61129841 -40743328 - MIR SINE MIR -108 154 88 442 261 159 20 chr13 61130047 61130242 -40742927 - MIR SINE MIR -13 249 28 403 247 22 0 chr13 61131960 61132049 -40741120 + MIR SINE MIR 17 107 -155 413 226 49 10 chr13 61132053 61132155 -40741014 + MIR SINE MIR 65 170 -92 2315 186 34 2 chr13 61132390 61132803 -40740366 - MSTB LTR MaLR 0 426 1 457 276 129 18 chr13 61133524 61133694 -40739475 + MIR3 SINE MIR 15 203 -5 274 234 11 43 chr13 61133765 61133859 -40739310 + GA-rich Low_complexity Low_complexity 3 93 0 2117 118 0 7 chr13 61137550 61137847 -40735322 - AluSg SINE Alu -15 295 1 325 307 33 27 chr13 61138021 61138171 -40734998 - L1MC4a LINE L1 -1878 5930 5780 1505 219 22 22 chr13 61138660 61139025 -40734144 - MLT1A1 LTR MaLR 0 365 1 1387 154 0 41 chr13 61139472 61139718 -40733451 - AluJb SINE Alu -8 304 69 23 33 0 0 chr13 61140394 61140424 -40732745 + AT_rich Low_complexity Low_complexity 1 30 0 213 94 0 0 chr13 61140434 61140466 -40732703 + (TA)n Simple_repeat Simple_repeat 2 33 0 751 92 42 0 chr13 61141616 61141736 -40731433 + L1MA3 LINE L1 6020 6144 -161 945 71 0 0 chr13 61141736 61141849 -40731320 + AluJb SINE Alu 15 127 -185 1093 98 17 6 chr13 61141850 61142024 -40731145 + L1MA3 LINE L1 6130 6305 0 2762 104 0 3 chr13 61143646 61144022 -40729147 - THE1C LTR MaLR 0 375 1 9791 126 33 15 chr13 61144022 61145573 -40727596 - THE1C-int LTR MaLR 0 1580 2 937 123 31 3 chr13 61145583 61145735 -40727434 - THE1C LTR MaLR 0 375 244 186 442 0 0 chr13 61145854 61145974 -40727195 - L2 LINE L2 -557 2757 2638 590 295 65 5 chr13 61146070 61146270 -40726899 + L1ME LINE L1 5504 5715 -406 2316 112 0 3 chr13 61146430 61146743 -40726426 + AluSq SINE Alu 1 312 -1 10746 54 1 1 chr13 61146997 61148369 -40724800 - L1P LINE L1 -3363 2783 1412 338 184 81 35 chr13 61148481 61148568 -40724601 + MIR SINE MIR 117 207 -55 237 120 84 0 chr13 61148968 61149110 -40724059 + (TA)n Simple_repeat Simple_repeat 1 154 0 35 24 0 0 chr13 61149119 61149161 -40724008 + AT_rich Low_complexity Low_complexity 1 42 0 279 133 0 0 chr13 61149694 61149739 -40723430 + (A)n Simple_repeat Simple_repeat 1 45 0 1559 161 8 11 chr13 61149743 61150010 -40723159 - L1M4 LINE L1 -576 5602 5337 38 51 0 0 chr13 61150022 61150081 -40723088 + AT_rich Low_complexity Low_complexity 1 59 0 1403 185 93 0 chr13 61150085 61150344 -40722825 - AluJb SINE Alu -26 286 4 507 229 0 14 chr13 61150346 61150490 -40722679 - L1M4 LINE L1 -816 5330 5189 1843 186 180 36 chr13 61150490 61151108 -40722061 + MER39 LTR ERV1 1 707 0 1054 69 0 0 chr13 61151108 61151238 -40721931 - AluSp/q SINE Alu -19 294 165 470 205 18 0 chr13 61151348 61151460 -40721709 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 1329 133 49 13 chr13 61151463 61151688 -40721481 - THE1C LTR MaLR -142 233 1 2488 190 25 49 chr13 61152489 61153099 -40720070 - L1MB1 LINE L1 -3 6165 5571 206 369 62 8 chr13 61153998 61154128 -40719041 - MIR SINE MIR -95 167 31 543 320 105 38 chr13 61154735 61155298 -40717871 - L2 LINE L2 0 3313 2708 350 288 60 27 chr13 61155306 61155490 -40717679 - L2 LINE L2 -942 2372 2183 879 245 81 27 chr13 61155827 61156178 -40716991 + L1ME1 LINE L1 4479 4869 -1277 1099 221 141 65 chr13 61156277 61156722 -40716447 + MER66A LTR ERV1 97 478 0 409 249 119 60 chr13 61156727 61156928 -40716241 + L1ME1 LINE L1 4879 5091 -1055 912 160 24 30 chr13 61156928 61157097 -40716072 - L1PA16 LINE L1 -2 6164 5997 4457 252 53 11 chr13 61157097 61158514 -40714655 - L1P LINE L1 -2037 4109 2634 269 267 0 30 chr13 61158571 61158672 -40714497 + L1ME1 LINE L1 5194 5291 -855 1635 266 71 43 chr13 61158732 61159393 -40713776 + L1ME1 LINE L1 5397 6083 -83 2166 135 30 33 chr13 61159393 61159756 -40713413 - THE1B LTR MaLR 0 364 3 1635 266 71 43 chr13 61159756 61159838 -40713331 + L1ME1 LINE L1 6083 6161 -5 324 266 0 0 chr13 61161034 61161113 -40712056 - MIR SINE MIR -56 206 128 200 367 9 28 chr13 61162136 61162245 -40710924 - L2 LINE L2 -446 2868 2762 228 328 60 0 chr13 61162318 61162385 -40710784 + L2 LINE L2 3139 3209 -63 25 51 0 0 chr13 61164423 61164462 -40708707 + AT_rich Low_complexity Low_complexity 1 39 0 251 235 0 35 chr13 61165145 61165192 -40707977 + L1MC4 LINE L1 6615 6659 -1383 210 71 0 0 chr13 61165192 61165220 -40707949 + (CA)n Simple_repeat Simple_repeat 2 29 0 251 235 0 35 chr13 61165220 61165257 -40707912 + L1MC4 LINE L1 6659 6696 -1346 782 185 0 22 chr13 61165873 61166008 -40707161 + FLAM_C SINE Alu 1 132 -1 4442 118 215 109 chr13 61166056 61167464 -40705705 + pTR5 LTR ERV1 743 2438 0 7711 182 28 31 chr13 61169711 61170332 -40702837 - L1P LINE L1 -1915 4231 3609 2201 120 7 0 chr13 61170332 61170640 -40702529 - AluSx SINE Alu -2 310 1 7711 182 28 31 chr13 61170640 61171725 -40701444 - L1P LINE L1 -2537 3609 2531 4043 191 18 0 chr13 61171724 61172514 -40700655 + L1PA15 LINE L1 4238 5041 -1105 * 780 59 0 0 chr13 61172510 61172612 -40700557 - L1P LINE L1 -725 5429 5328 * 5171 152 16 2 chr13 61172612 61173715 -40699454 + L1PA15 LINE L1 5047 6161 -4 251 333 67 19 chr13 61176210 61176315 -40696854 - L2 LINE L2 -1 3271 3162 2079 201 19 7 chr13 61176315 61176779 -40696390 + LTR45B LTR ERV1 11 511 -14 1986 126 49 0 chr13 61177068 61177233 -40695936 - AluSq SINE Alu -14 299 113 198 71 0 0 chr13 61177233 61177261 -40695908 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1986 126 49 0 chr13 61177261 61177380 -40695789 - AluSq SINE Alu -200 113 1 180 0 0 0 chr13 61177522 61177542 -40695627 + (A)n Simple_repeat Simple_repeat 1 20 0 5342 78 18 3 chr13 61178175 61178905 -40694264 - L1PA8A LINE L1 -4 6127 5387 1976 75 0 0 chr13 61179043 61179282 -40693887 + AluY SINE Alu 71 309 -2 24 32 0 0 chr13 61179691 61179722 -40693447 + AT_rich Low_complexity Low_complexity 1 31 0 255 61 0 0 chr13 61179807 61179840 -40693329 + (TG)n Simple_repeat Simple_repeat 1 33 0 43 35 0 0 chr13 61180162 61180219 -40692950 + AT_rich Low_complexity Low_complexity 1 57 0 3098 61 5 7 chr13 61183418 61183827 -40689342 - L1PA7 LINE L1 -4 6150 5743 2007 80 0 0 chr13 61183827 61184089 -40689080 + L1P2 LINE L1 5349 5610 -544 311 372 51 24 chr13 61184555 61184848 -40688321 + L2 LINE L2 2034 2334 -980 1178 325 110 34 chr13 61185034 61185485 -40687684 + L2 LINE L2 694 1224 -2090 1882 156 3 7 chr13 61185485 61185787 -40687382 - AluSx SINE Alu -11 301 1 1178 325 110 34 chr13 61185787 61186074 -40687095 + L2 LINE L2 1224 1488 -1826 497 291 178 4 chr13 61186080 61186321 -40686848 + L2 LINE L2 2037 2319 -995 340 277 84 46 chr13 61186443 61186681 -40686488 + MLT1I LTR MaLR 161 407 -2 583 308 115 30 chr13 61186683 61186988 -40686181 + L2 LINE L2 2316 2646 -668 1440 227 42 55 chr13 61187191 61187592 -40685577 + MLT1F1 LTR MaLR 172 567 0 226 279 12 23 chr13 61188677 61188763 -40684406 + GA-rich Low_complexity Low_complexity 3 87 0 22 0 0 0 chr13 61188910 61188932 -40684237 + GC_rich Low_complexity Low_complexity 1 22 0 770 261 6 0 chr13 61189347 61189508 -40683661 - MER5A DNA MER1_type -5 184 23 180 0 0 0 chr13 61189670 61189690 -40683479 + (T)n Simple_repeat Simple_repeat 1 20 0 30 45 0 0 chr13 61190514 61190558 -40682611 + AT_rich Low_complexity Low_complexity 1 44 0 649 286 47 0 chr13 61191330 61191543 -40681626 + MIR SINE MIR 40 262 0 325 301 224 7 chr13 61193750 61193893 -40679276 + MIR SINE MIR 53 226 -36 240 352 101 30 chr13 61194904 61195103 -40678066 - L3 LINE CR1 -3 1574 1362 225 368 52 22 chr13 61195160 61195296 -40677873 + MIR SINE MIR 58 197 -65 199 337 20 10 chr13 61195353 61195454 -40677715 - L3 LINE CR1 -199 1378 1277 182 339 113 63 chr13 61195540 61195779 -40677390 - L3 LINE CR1 -1171 406 156 330 400 15 0 chr13 61196456 61196586 -40676583 + L2 LINE L2 3134 3265 -7 2077 126 27 33 chr13 61198044 61198410 -40674759 + THE1B LTR MaLR 1 364 0 591 221 153 26 chr13 61198501 61198691 -40674478 + MIR SINE MIR 2 215 -47 284 366 25 66 chr13 61198738 61199134 -40674035 + L2 LINE L2 2807 3186 -86 300 53 0 0 chr13 61199259 61199297 -40673872 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 175 0 0 chr13 61199496 61199536 -40673633 + (TTA)n Simple_repeat Simple_repeat 3 42 0 372 22 0 0 chr13 61201356 61201401 -40671768 + (CA)n Simple_repeat Simple_repeat 1 45 0 1724 176 42 9 chr13 61201402 61201681 -40671488 + Tigger3(Golem) DNA MER2_type 1 294 -937 441 0 0 0 chr13 61201681 61201730 -40671439 + (TA)n Simple_repeat Simple_repeat 1 49 0 1724 176 42 9 chr13 61201730 61201786 -40671383 + Tigger3(Golem) DNA MER2_type 294 347 -884 180 379 68 0 chr13 61201930 61202062 -40671107 - L2 LINE L2 -214 3058 2918 481 226 57 24 chr13 61202146 61202270 -40670899 + MIR SINE MIR 123 250 -12 494 252 161 0 chr13 61202525 61202680 -40670489 + MER58A DNA MER1_type 45 224 0 180 77 0 0 chr13 61203116 61203142 -40670027 + (TG)n Simple_repeat Simple_repeat 1 26 0 238 139 0 23 chr13 61203181 61203224 -40669945 - LTR33A LTR ERVL -28 495 454 494 276 50 35 chr13 61203848 61204109 -40669060 - HAL1b LINE L1 -473 875 611 9534 187 23 13 chr13 61204339 61206143 -40667026 + L1MA2 LINE L1 8 1828 -5737 6392 158 31 21 chr13 61206145 61208194 -40664975 + L1MA2 LINE L1 2540 4612 -2953 * 7334 164 14 9 chr13 61208192 61208206 -40664963 - L1P LINE L1 -781 5365 5353 2187 136 0 0 chr13 61208206 61208515 -40664654 + AluSc SINE Alu 1 309 0 7334 164 14 9 chr13 61208515 61209876 -40663293 - L1P LINE L1 -793 5353 3983 7480 135 16 15 chr13 61209909 61212313 -40660856 + L1MA2 LINE L1 5316 7723 0 432 0 0 0 chr13 61212885 61212933 -40660236 + (TG)n Simple_repeat Simple_repeat 2 49 0 1998 70 0 4 chr13 61213649 61213922 -40659247 - L1PA4 LINE L1 -1 6154 5883 1449 228 3 0 chr13 61214248 61214560 -40658609 + AluSq SINE Alu 1 313 0 1925 184 66 25 chr13 61215008 61215415 -40657754 - Tigger2a DNA MER2_type 0 434 11 2563 61 0 0 chr13 61215840 61216150 -40657019 - AluY SINE Alu -1 310 1 489 314 118 50 chr13 61216514 61216956 -40656213 - L2 LINE L2 -12 3301 2830 1977 133 55 17 chr13 61216961 61217322 -40655847 + THE1C LTR MaLR 1 375 0 1373 256 136 48 chr13 61217335 61217873 -40655296 - MLT1E LTR MaLR -8 585 1 1187 174 130 51 chr13 61219402 61219678 -40653491 + AluJb SINE Alu 1 298 -4 5695 195 8 34 chr13 61219688 61221033 -40652136 + L1 LINE L1 3828 5138 -1008 252 266 16 0 chr13 61221056 61221120 -40652049 + MIR SINE MIR 177 241 -21 324 0 0 0 chr13 61222259 61222295 -40650874 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 204 0 0 chr13 61223411 61223460 -40649709 + GA-rich Low_complexity Low_complexity 3 51 0 27 0 0 0 chr13 61223744 61223771 -40649398 + AT_rich Low_complexity Low_complexity 1 27 0 7457 33 9 0 chr13 61223771 61225096 -40648073 - L1PA5 LINE L1 -7 6147 4818 2496 40 0 0 chr13 61225096 61225399 -40647770 + L1PA5 LINE L1 4513 4815 -1331 2353 242 2 38 chr13 61226331 61226906 -40646263 - MLT2B3 LTR ERVL 0 554 1 2987 48 19 0 chr13 61226984 61227361 -40645808 - L1PA5 LINE L1 -3 6151 5768 232 272 49 25 chr13 61227603 61227684 -40645485 - MIR3 SINE MIR -6 202 120 939 124 119 0 chr13 61227725 61227902 -40645267 + L1PB1 LINE L1 3 200 -6663 12402 140 117 12 chr13 61227904 61231582 -40641587 + L1PB1 LINE L1 636 4708 -2154 5566 102 60 1 chr13 61231560 61232137 -40641032 + L1PB1 LINE L1 5884 6536 -343 * 455 33 16 0 chr13 61232137 61232198 -40640971 + (TA)n Simple_repeat Simple_repeat 2 63 0 5566 102 60 1 chr13 61232198 61232564 -40640605 + L1PB1 LINE L1 6536 6879 0 27 0 0 0 chr13 61232633 61232660 -40640509 + AT_rich Low_complexity Low_complexity 1 27 0 35 98 0 0 chr13 61232763 61232875 -40640294 + AT_rich Low_complexity Low_complexity 1 112 0 236 115 49 49 chr13 61234832 61234893 -40638276 + (TTATG)n Simple_repeat Simple_repeat 4 64 0 1689 161 11 0 chr13 61234950 61235223 -40637946 + AluSx SINE Alu 1 276 -36 207 216 0 0 chr13 61235232 61235269 -40637900 + polypurine Low_complexity Low_complexity 4 40 0 5499 130 30 13 chr13 61235562 61236550 -40636619 + L1PA16 LINE L1 5156 6160 -6 1027 247 32 9 chr13 61236572 61236970 -40636199 + LTR16A LTR ERVL 14 450 0 1311 146 9 9 chr13 61237401 61237614 -40635555 + AluJb SINE Alu 86 298 -14 24 0 0 0 chr13 61237890 61237914 -40635255 + AT_rich Low_complexity Low_complexity 1 24 0 323 289 11 11 chr13 61238422 61238512 -40634657 - MIR SINE MIR -147 115 26 198 0 0 0 chr13 61238517 61238539 -40634630 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 982 101 0 20 chr13 61238541 61238690 -40634479 - L1PB1 LINE L1 -1 6150 6005 1526 133 208 3 chr13 61238932 61239230 -40633939 - MER46B DNA MER2_type 0 236 1 788 248 22 36 chr13 61239504 61239726 -40633443 + MER20 DNA MER1_type 1 219 0 263 214 31 0 chr13 61239831 61239929 -40633240 - MER96B DNA MER1_type? -257 160 60 428 313 80 12 chr13 61239995 61240094 -40633075 + MIR SINE MIR 1 118 -144 2061 121 0 4 chr13 61240094 61240409 -40632760 - AluSx SINE Alu 0 319 6 428 313 80 12 chr13 61240409 61240471 -40632698 + MIR SINE MIR 118 174 -88 314 296 51 105 chr13 61240738 61241032 -40632137 + MLT1J LTR MaLR 31 308 -203 4597 135 1 26 chr13 61241034 61241758 -40631411 + MER50 LTR ERV1 1 706 -28 297 248 35 92 chr13 61241769 61241910 -40631259 + MLT1J LTR MaLR 301 433 -78 201 74 0 0 chr13 61242651 61242678 -40630491 + (TAGA)n Simple_repeat Simple_repeat 1 27 0 710 330 0 23 chr13 61242898 61243113 -40630056 + LTR16C LTR ERVL 106 315 -176 222 318 48 0 chr13 61243390 61243453 -40629716 - L2 LINE L2 -12 3260 3195 630 338 134 10 chr13 61246354 61246742 -40626427 - L2 LINE L2 -37 3276 2841 1708 186 74 6 chr13 61246814 61246961 -40626208 - L1MB2 LINE L1 -13 6158 6012 262 284 95 45 chr13 61246961 61247225 -40625944 - L1MC3 LINE L1 -1783 6002 5726 213 378 81 30 chr13 61248155 61248552 -40624617 - L2 LINE L2 -557 2757 2341 385 304 66 44 chr13 61248701 61248928 -40624241 - MIR SINE MIR 0 262 31 225 94 0 0 chr13 61249719 61249751 -40623418 + (T)n Simple_repeat Simple_repeat 1 32 0 4798 97 29 10 chr13 61250591 61251763 -40621406 + SVA Other Other 1 1386 0 258 303 128 9 chr13 61252081 61252190 -40620979 + L2 LINE L2 3192 3313 0 1675 280 155 29 chr13 61253156 61254205 -40618964 - L2 LINE L2 -19 3294 2110 6969 41 0 7 chr13 61254268 61255125 -40618044 + L1PA5 LINE L1 5297 6147 -7 189 0 0 0 chr13 61255125 61255146 -40618023 + (TA)n Simple_repeat Simple_repeat 2 22 0 388 277 43 37 chr13 61255215 61255403 -40617766 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr13 61255629 61255657 -40617512 + AT_rich Low_complexity Low_complexity 1 28 0 218 91 23 45 chr13 61256080 61256124 -40617045 + (CAAAAA)n Simple_repeat Simple_repeat 2 44 0 194 0 39 0 chr13 61256124 61256150 -40617019 + (CA)n Simple_repeat Simple_repeat 2 28 0 324 0 0 0 chr13 61256540 61256576 -40616593 + (TG)n Simple_repeat Simple_repeat 2 37 0 1266 263 82 5 chr13 61256672 61257110 -40616059 - MLT1H LTR MaLR 0 549 78 278 270 89 89 chr13 61257985 61258366 -40614803 - L1MC4a LINE L1 -1854 5954 5574 25 83 0 0 chr13 61258512 61258572 -40614597 + AT_rich Low_complexity Low_complexity 1 60 0 218 180 0 49 chr13 61258933 61258994 -40614175 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 699 288 11 5 chr13 61260837 61261021 -40612148 + MER5A DNA MER1_type 1 185 -4 5336 66 3 4 chr13 61261500 61262194 -40610975 + L1PA10 LINE L1 5474 6166 -2 212 375 45 23 chr13 61263420 61263596 -40609573 + MIR SINE MIR 40 219 -43 338 339 58 6 chr13 61264722 61264893 -40608276 - MER5A DNA MER1_type -3 186 7 2217 162 75 37 chr13 61265459 61265978 -40607191 + L1MA9 LINE L1 5773 6311 -1 2171 119 10 0 chr13 61266397 61266700 -40606469 - AluSq SINE Alu -2 311 6 309 313 88 21 chr13 61267072 61267264 -40605905 + MIR SINE MIR 47 251 -11 294 29 0 0 chr13 61268664 61268699 -40604470 + (TG)n Simple_repeat Simple_repeat 1 35 0 474 300 94 9 chr13 61268922 61269242 -40603927 + L1ME4a LINE L1 5481 5827 -294 221 0 35 0 chr13 61269380 61269409 -40603760 + (TA)n Simple_repeat Simple_repeat 2 31 0 1505 210 13 23 chr13 61270430 61270740 -40602429 - MER61A LTR ERV1 -36 307 1 200 122 41 0 chr13 61270792 61270841 -40602328 + A-rich Low_complexity Low_complexity 2 52 0 2124 101 3 14 chr13 61270957 61271265 -40601904 - AluSx SINE Alu 0 305 1 321 324 125 53 chr13 61271332 61271911 -40601258 - L2 LINE L2 -12 3260 2624 1415 139 8 4 chr13 61271925 61272177 -40600992 + L1MA4A LINE L1 6040 6292 -11 427 171 34 11 chr13 61272202 61272377 -40600792 + (TA)n Simple_repeat Simple_repeat 2 180 0 196 234 16 31 chr13 61272644 61272708 -40600461 + MIR SINE MIR 150 212 -50 277 282 0 14 chr13 61274179 61274250 -40598919 - L2 LINE L2 0 3313 3244 215 88 61 48 chr13 61274286 61274433 -40598736 + (TA)n Simple_repeat Simple_repeat 2 150 0 194 165 78 0 chr13 61274499 61274614 -40598555 + (ATATG)n Simple_repeat Simple_repeat 2 125 0 239 138 44 55 chr13 61274652 61274833 -40598336 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 328 133 97 12 chr13 61274974 61275139 -40598030 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 286 109 26 70 chr13 61275126 61275442 -40597727 + (TA)n Simple_repeat Simple_repeat 1 301 0 * 4431 187 37 66 chr13 61275459 61277292 -40595877 - L1MA9 LINE L1 -57 6255 4541 2383 161 52 9 chr13 61277496 61277942 -40595227 + MLT1C LTR MaLR 1 465 -2 231 383 92 27 chr13 61278054 61278467 -40594702 - L2 LINE L2 -414 2900 2461 870 194 19 0 chr13 61279277 61279432 -40593737 - FRAM SINE Alu -19 157 1 813 242 139 32 chr13 61279845 61280422 -40592747 - L1M3de LINE L1 -4519 1784 1122 181 359 93 53 chr13 61280808 61281206 -40591963 + L2 LINE L2 2335 2748 -566 221 240 60 0 chr13 61281212 61281262 -40591907 - L2 LINE L2 0 3313 3261 379 340 75 56 chr13 61281520 61281999 -40591170 - L2 LINE L2 -562 2752 2265 396 292 82 33 chr13 61282450 61282691 -40590478 + MLT1H LTR MaLR 310 549 0 225 339 0 0 chr13 61282889 61282951 -40590218 - MIR SINE MIR -148 114 53 2286 100 3 3 chr13 61283579 61283918 -40589251 + AluSp SINE Alu 1 339 0 1281 169 36 28 chr13 61283990 61284105 -40589064 - MLT1D LTR MaLR 0 505 392 1429 244 10 39 chr13 61284105 61284490 -40588679 - MLT1A2 LTR MaLR 0 374 1 1281 169 36 28 chr13 61284490 61284623 -40588546 - MLT1D LTR MaLR -113 392 255 1785 173 46 74 chr13 61284631 61285088 -40588081 - MLT1C LTR MaLR -8 459 16 803 204 39 111 chr13 61285100 61285380 -40587789 - MLT1D LTR MaLR -245 260 1 255 133 0 0 chr13 61285874 61285919 -40587250 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 82 0 0 chr13 61286094 61286143 -40587026 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr13 61286668 61286691 -40586478 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr13 61287415 61287448 -40585721 + (TG)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chr13 61287737 61287764 -40585405 + AT_rich Low_complexity Low_complexity 1 27 0 222 37 0 0 chr13 61288161 61288188 -40584981 + (TG)n Simple_repeat Simple_repeat 1 27 0 209 33 33 0 chr13 61288188 61288218 -40584951 + (GA)n Simple_repeat Simple_repeat 2 32 0 331 221 0 19 chr13 61288560 61288664 -40584505 + CT-rich Low_complexity Low_complexity 1 102 0 983 147 76 14 chr13 61288793 61289004 -40584165 - L1MC2 LINE L1 -9 6335 6112 1363 201 22 82 chr13 61289797 61290161 -40583008 + MLT1B LTR MaLR 49 390 0 2066 122 10 0 chr13 61290955 61291251 -40581918 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr13 61292845 61292870 -40580299 + AT_rich Low_complexity Low_complexity 1 25 0 227 211 84 0 chr13 61292935 61293006 -40580163 - MLT1G1 LTR MaLR 0 595 519 1545 165 97 56 chr13 61293008 61293527 -40579642 - MER67C LTR ERV1 -3 511 15 4281 220 84 27 chr13 61294459 61295492 -40577677 - Charlie1a DNA MER1_type -1317 1444 316 1656 78 5 0 chr13 61295492 61295697 -40577472 + AluSp SINE Alu 93 298 -15 4281 220 84 27 chr13 61295697 61295997 -40577172 - Charlie1a DNA MER1_type -2445 316 35 249 317 20 20 chr13 61296047 61296148 -40577021 + L2 LINE L2 3162 3262 -51 696 222 216 31 chr13 61296234 61296590 -40576579 + MER69 DNA AcHobo 803 2526 0 195 319 85 21 chr13 61297393 61297534 -40575635 + L3 LINE CR1 1204 1353 -224 209 305 0 0 chr13 61297946 61298005 -40575164 + (CA)n Simple_repeat Simple_repeat 2 60 0 18873 92 13 19 chr13 61298264 61300101 -40573068 + L1P LINE L1 3 1822 -4324 2314 68 0 0 chr13 61300101 61300379 -40572790 + AluY SINE Alu 1 278 -33 18873 92 13 19 chr13 61300379 61301237 -40571932 + L1P LINE L1 1822 2683 -3463 27866 55 6 9 chr13 61301337 61301457 -40571712 + L1P2 LINE L1 1739 1858 -4296 2314 68 0 0 chr13 61301457 61301735 -40571434 + AluY SINE Alu 1 278 -33 27866 55 6 9 chr13 61301735 61305644 -40567525 + L1P2 LINE L1 1858 5754 -400 2303 103 3 0 chr13 61306452 61306753 -40566416 - AluSp SINE Alu -11 302 1 353 274 251 6 chr13 61306862 61307037 -40566132 + MIR SINE MIR 35 252 -10 484 256 38 62 chr13 61307048 61307259 -40565910 - MLT1L LTR MaLR 0 615 410 1936 155 19 32 chr13 61307333 61307707 -40565462 + MLT1A2 LTR MaLR 6 374 0 1489 170 167 19 chr13 61309022 61309393 -40563776 + MSTA LTR MaLR 1 426 -2 26 30 0 0 chr13 61309417 61309450 -40563719 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr13 61309953 61309983 -40563186 + AT_rich Low_complexity Low_complexity 1 30 0 1769 138 0 77 chr13 61310166 61310492 -40562677 + AluSx SINE Alu 1 301 -11 924 182 6 12 chr13 61310641 61310811 -40562358 + AluJo SINE Alu 120 288 -24 192 279 12 70 chr13 61313653 61313739 -40559430 - MIR SINE MIR -8 254 174 277 349 9 37 chr13 61313977 61314086 -40559083 + MIR SINE MIR 5 110 -152 1544 150 133 22 chr13 61314495 61314856 -40558313 + L1MB1 LINE L1 5765 6165 -3 1810 200 84 26 chr13 61317239 61317408 -40555761 - L1MA9 LINE L1 -1 6311 6153 2069 112 14 11 chr13 61317408 61317695 -40555474 + AluSx SINE Alu 6 293 -19 1810 200 84 26 chr13 61317695 61318024 -40555145 - L1MA9 LINE L1 -159 6153 5784 340 204 75 21 chr13 61318495 61318588 -40554581 - L2 LINE L2 -13 3300 3203 454 303 58 113 chr13 61318703 61319082 -40554087 + L2 LINE L2 2907 3264 -8 1354 259 117 49 chr13 61319284 61319832 -40553337 + MLT1G1 LTR MaLR 3 587 -8 41 58 0 0 chr13 61320005 61320074 -40553095 + AT_rich Low_complexity Low_complexity 1 69 0 300 172 0 0 chr13 61320171 61320229 -40552940 + CT-rich Low_complexity Low_complexity 2 59 0 2275 167 81 40 chr13 61320371 61320893 -40552276 - L1MC3 LINE L1 -155 7630 7088 947 158 107 26 chr13 61321015 61321249 -40551920 - L1MCa LINE L1 -4116 2310 2058 878 231 45 74 chr13 61321324 61321661 -40551508 - MLT2C1 LTR ERVL 0 397 71 2063 156 8 11 chr13 61321667 61322038 -40551131 - L1PB1 LINE L1 -1 6150 5781 408 87 70 9 chr13 61322038 61322153 -40551016 + (TA)n Simple_repeat Simple_repeat 2 123 0 263 113 0 57 chr13 61322155 61322208 -40550961 - L1PB1 LINE L1 -359 5792 5743 297 150 133 0 chr13 61322214 61322274 -40550895 - MLT2C1 LTR ERVL -327 70 3 1150 204 232 31 chr13 61322277 61322786 -40550383 - L1MCa LINE L1 -4510 1916 1306 1106 186 47 39 chr13 61322788 61323067 -40550102 - MER93b LTR ERV1 -2 371 91 923 230 68 15 chr13 61323081 61323346 -40549823 - L1MCa LINE L1 -5266 1160 882 1314 213 66 21 chr13 61323525 61323858 -40549311 + MLT1D LTR MaLR 1 348 -157 332 263 50 0 chr13 61323895 61323994 -40549175 + MLT1D LTR MaLR 402 505 0 21 0 0 0 chr13 61324611 61324632 -40548537 + AT_rich Low_complexity Low_complexity 1 21 0 38 22 0 0 chr13 61325305 61325350 -40547819 + AT_rich Low_complexity Low_complexity 1 45 0 1711 174 7 4 chr13 61325350 61325631 -40547538 - AluJo SINE Alu -19 293 12 1991 141 0 7 chr13 61326801 61327091 -40546078 + AluSx SINE Alu 1 288 -24 375 284 53 82 chr13 61327112 61327320 -40545849 + MER63A DNA MER1_type 9 210 0 195 42 0 0 chr13 61327328 61327352 -40545817 + (CATCC)n Simple_repeat Simple_repeat 4 27 0 523 266 89 12 chr13 61327433 61327602 -40545567 + MIR SINE MIR 47 228 -34 250 128 0 0 chr13 61328142 61328181 -40544988 - MIR3 SINE MIR -11 197 159 1227 164 48 5 chr13 61329329 61329721 -40543448 + LOR1a LTR ERV1 2 480 -17 243 172 52 0 chr13 61331309 61331367 -40541802 - LTR31 LTR ERV1 -540 79 19 215 382 122 0 chr13 61332394 61332517 -40540652 + MIR3 SINE MIR 71 208 0 283 141 0 42 chr13 61334076 61334147 -40539022 + (TTTCC)n Simple_repeat Simple_repeat 3 70 0 581 284 132 40 chr13 61334297 61335146 -40538023 - L1MC/D LINE L1 -743 5403 4737 511 167 0 0 chr13 61335239 61335323 -40537846 - MER34 LTR ERV1 -79 463 380 2069 142 45 11 chr13 61335364 61335723 -40537446 - L1PA16 LINE L1 -4 6162 5792 2135 129 0 0 chr13 61335855 61336149 -40537020 - AluSg SINE Alu -16 294 1 29 28 0 0 chr13 61336241 61336277 -40536892 + AT_rich Low_complexity Low_complexity 1 36 0 421 251 93 64 chr13 61336304 61336641 -40536528 - L1ME LINE L1 -690 5480 5113 2423 94 3 0 chr13 61336641 61336950 -40536219 - AluSx SINE Alu -2 310 1 421 251 93 64 chr13 61336950 61337185 -40535984 - L1ME LINE L1 -1057 5113 4886 262 271 161 36 chr13 61337191 61337383 -40535786 - L1ME LINE L1 -1320 4826 4611 229 227 152 0 chr13 61337445 61337511 -40535658 + L2 LINE L2 2640 2715 -599 1942 133 13 10 chr13 61337511 61337811 -40535358 + AluSx SINE Alu 1 301 -11 1469 249 24 15 chr13 61337959 61338369 -40534800 - L1ME1 LINE L1 -67 6099 5686 2488 62 7 0 chr13 61338377 61338681 -40534488 - AluY SINE Alu -5 306 1 735 152 194 12 chr13 61338681 61338846 -40534323 - MSTA LTR MaLR -233 195 1 965 181 124 27 chr13 61338854 61338984 -40534185 - L1ME1 LINE L1 -1147 4999 4883 183 114 0 0 chr13 61338984 61339019 -40534150 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 965 181 124 27 chr13 61339019 61339147 -40534022 - L1ME1 LINE L1 -1263 4883 4716 695 285 6 6 chr13 61340088 61340267 -40532902 + MIR3 SINE MIR 24 202 -6 408 313 82 26 chr13 61341061 61341256 -40531913 + L2 LINE L2 1730 1935 -1379 1302 310 55 39 chr13 61341263 61341698 -40531471 + L2 LINE L2 2091 2538 -776 2109 149 0 0 chr13 61341698 61342007 -40531162 + AluSx SINE Alu 1 309 -3 1302 310 55 39 chr13 61342007 61342132 -40531037 + L2 LINE L2 2538 2660 -654 285 261 101 0 chr13 61342181 61342250 -40530919 + LTR33A LTR ERVL 55 130 -393 311 285 113 78 chr13 61342276 61342532 -40530637 + LTR33A LTR ERVL 213 477 -46 5362 131 2 26 chr13 61342548 61342933 -40530236 - L1PA15 LINE L1 -4 6161 5768 2102 123 0 0 chr13 61342933 61343225 -40529944 - AluSx SINE Alu -20 292 1 5362 131 2 26 chr13 61343225 61344099 -40529070 - L1PA15 LINE L1 -397 5768 4922 2345 87 16 0 chr13 61344099 61344415 -40528754 - L1PA8A LINE L1 0 6131 5806 1557 208 31 21 chr13 61344419 61344488 -40528681 + L1P LINE L1 2706 2773 -3373 2182 102 27 0 chr13 61344488 61344607 -40528562 + AluSp SINE Alu 1 115 -198 198 0 0 0 chr13 61344607 61344629 -40528540 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2182 102 27 0 chr13 61344629 61344803 -40528366 + AluSp SINE Alu 115 302 -11 1557 208 31 21 chr13 61344803 61345152 -40528017 + L1P LINE L1 2773 3128 -3018 715 284 43 120 chr13 61345182 61345585 -40527584 + L2 LINE L2 2654 2998 -315 1974 135 7 0 chr13 61345585 61345867 -40527302 - AluSx SINE Alu -24 288 5 715 284 43 120 chr13 61345867 61346158 -40527011 + L2 LINE L2 2998 3310 -3 2168 96 7 0 chr13 61346273 61346554 -40526615 + AluSc SINE Alu 3 285 -24 230 313 57 17 chr13 61346744 61346920 -40526249 + L1MEd LINE L1 3 185 -5934 576 239 70 12 chr13 61347066 61347348 -40525821 + L1MC/D LINE L1 5242 5612 -608 1560 204 126 7 chr13 61347417 61347863 -40525306 - L1MCa LINE L1 -5112 1314 816 2321 75 7 0 chr13 61347868 61348160 -40525009 - AluY SINE Alu -17 294 1 191 179 0 26 chr13 61349348 61349387 -40523782 + MER5A DNA MER1_type 27 64 -125 1877 219 123 26 chr13 61349418 61349471 -40523698 + MLT1E2 LTR MaLR 89 135 -491 1967 184 29 62 chr13 61349471 61349954 -40523215 - MLT1C LTR MaLR 0 467 1 1877 219 123 26 chr13 61349954 61350433 -40522736 + MLT1E2 LTR MaLR 135 625 -1 501 138 18 9 chr13 61351885 61351994 -40521175 + (TA)n Simple_repeat Simple_repeat 2 111 0 362 321 105 21 chr13 61351995 61352185 -40520984 - MIR3 SINE MIR -1 207 2 2243 113 0 0 chr13 61353241 61353532 -40519637 + AluSg SINE Alu 1 291 -19 750 269 14 14 chr13 61356532 61356740 -40516429 - MIR SINE MIR -32 230 23 22 0 0 0 chr13 61358663 61358685 -40514484 + AT_rich Low_complexity Low_complexity 1 22 0 1884 118 66 3 chr13 61359555 61359860 -40513309 + L1MC1 LINE L1 6001 6324 -9 522 344 16 10 chr13 61361307 61361499 -40511670 + MIR SINE MIR 28 220 -42 433 280 77 43 chr13 61361976 61362183 -40510986 - MIR SINE MIR -40 222 9 278 215 31 0 chr13 61362285 61362350 -40510819 + L2 LINE L2 3206 3272 0 469 331 53 58 chr13 61364738 61365170 -40507999 - MLT1K LTR MaLR 0 588 159 180 111 0 0 chr13 61365858 61365885 -40507284 + (T)n Simple_repeat Simple_repeat 1 27 0 1410 190 42 11 chr13 61366762 61367025 -40506144 + AluJb SINE Alu 31 301 -11 234 0 0 0 chr13 61367340 61367366 -40505803 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2352 85 3 0 chr13 61367724 61368029 -40505140 - AluY SINE Alu -5 306 1 262 149 85 0 chr13 61368071 61368118 -40505051 - MIR SINE MIR -76 132 82 228 182 0 0 chr13 61368176 61368220 -40504949 + T-rich Low_complexity Low_complexity 1 44 0 3992 107 2 19 chr13 61368220 61368848 -40504321 - L1PA8 LINE L1 -40 6132 5516 182 276 92 26 chr13 61369006 61369082 -40504087 - L2 LINE L2 -56 3216 3136 286 270 27 36 chr13 61369234 61369345 -40503824 + LTR67 LTR ERVL 92 201 -356 294 368 85 24 chr13 61370034 61370409 -40502760 - L2 LINE L2 -339 2975 2578 1894 199 37 79 chr13 61370761 61371269 -40501900 + MLT1D LTR MaLR 3 489 -16 452 307 41 7 chr13 61371657 61371927 -40501242 + L1ME LINE L1 5541 5819 -302 197 239 7 35 chr13 61373231 61373373 -40499796 + GA-rich Low_complexity Low_complexity 2 139 0 548 350 17 17 chr13 61373809 61373989 -40499180 - MIR3 SINE MIR -12 196 17 2099 171 25 15 chr13 61374842 61375234 -40497935 + MSTD LTR MaLR 1 396 0 281 276 69 55 chr13 61375403 61375548 -40497621 - MIR3 SINE MIR -61 147 1 424 249 31 72 chr13 61377677 61377998 -40495171 - HAL1 LINE L1 -1389 1118 811 41136 31 22 1 chr13 61377999 61384027 -40489142 + L1HS LINE L1 1 6155 0 237 284 69 10 chr13 61384237 61384339 -40488830 - HAL1 LINE L1 -1955 552 445 1903 127 4 4 chr13 61384384 61384697 -40488472 - AluSx SINE Alu 0 318 6 696 255 131 16 chr13 61384726 61385040 -40488129 - HAL1 LINE L1 -2152 355 6 35 0 0 0 chr13 61385112 61385147 -40488022 + AT_rich Low_complexity Low_complexity 1 35 0 310 250 84 64 chr13 61385257 61385477 -40487692 - L1ME4a LINE L1 -238 5883 5654 3712 111 37 4 chr13 61385477 61386038 -40487131 + LTR19B LTR ERV1 1 580 0 310 250 84 64 chr13 61386038 61386113 -40487056 - L1ME4a LINE L1 -467 5654 5582 285 348 34 39 chr13 61386511 61386715 -40486454 - MER115 DNA AcHobo -489 204 2 2184 107 59 31 chr13 61386985 61387339 -40485830 + THE1B LTR MaLR 1 364 0 1158 230 167 21 chr13 61387341 61387767 -40485402 + MLT1D LTR MaLR 18 505 0 311 281 0 56 chr13 61388011 61388100 -40485069 + MIR SINE MIR 29 112 -150 408 20 0 0 chr13 61388498 61388547 -40484622 + (CA)n Simple_repeat Simple_repeat 2 50 0 431 269 47 57 chr13 61389293 61389505 -40483664 + MER63A DNA MER1_type 1 210 0 10117 47 8 5 chr13 61389900 61391942 -40481227 - L1PA5 LINE L1 -7 6147 4102 700 222 111 0 chr13 61394523 61394703 -40478466 - MER58A DNA MER1_type -24 200 1 2276 107 0 0 chr13 61394834 61395133 -40478036 - AluSg SINE Alu -11 299 1 1315 199 156 22 chr13 61395637 61396040 -40477129 - MLT1C LTR MaLR 0 467 11 372 130 0 0 chr13 61396740 61396809 -40476360 + (CA)n Simple_repeat Simple_repeat 2 70 0 620 283 7 7 chr13 61398454 61398606 -40474563 + MIR SINE MIR 22 173 -89 6830 55 11 0 chr13 61400642 61402141 -40471028 - L1PA7 LINE L1 -7 6147 4632 2001 141 8 44 chr13 61402141 61402276 -40470893 + MER6 DNA MER2_type 491 629 -236 1167 167 5 0 chr13 61402276 61402474 -40470695 + L1PA15 LINE L1 5963 6161 -4 2001 141 8 44 chr13 61402474 61402727 -40470442 + MER6 DNA MER2_type 629 865 0 287 310 42 35 chr13 61402729 61402871 -40470298 + L2 LINE L2 3165 3307 -6 27 29 0 0 chr13 61403964 61403998 -40469171 + AT_rich Low_complexity Low_complexity 1 34 0 1475 244 92 30 chr13 61405137 61405678 -40467491 - L1ME1 LINE L1 -9 6157 5583 2161 114 0 0 chr13 61405692 61406019 -40467150 + AluSx SINE Alu 5 331 0 1398 303 49 17 chr13 61406148 61406683 -40466486 + HERV16 LTR ERVL 1688 2239 -2757 290 230 36 86 chr13 61406748 61406887 -40466282 + HERV16 LTR ERVL 2340 2471 -2525 359 329 27 7 chr13 61407042 61407188 -40465981 + HERV16 LTR ERVL 2641 2789 -2207 347 275 89 85 chr13 61407386 61407633 -40465536 + L2 LINE L2 1727 1974 -1340 692 320 144 39 chr13 61407634 61408250 -40464919 + L2 LINE L2 2241 2921 -393 607 275 46 9 chr13 61408348 61408573 -40464596 - MIR SINE MIR -26 236 3 228 274 12 12 chr13 61409220 61409304 -40463865 + (TA)n Simple_repeat Simple_repeat 1 84 0 425 333 9 14 chr13 61409499 61409709 -40463460 - L1ME LINE L1 -428 5693 5485 342 0 0 0 chr13 61409791 61409829 -40463340 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1804 152 4 4 chr13 61409833 61410102 -40463067 - AluSx SINE Alu -37 275 7 345 345 35 18 chr13 61410107 61410391 -40462778 + L1MC/D LINE L1 5513 5801 -2007 381 272 22 0 chr13 61410427 61410519 -40462650 - MIR SINE MIR -97 165 72 237 240 131 44 chr13 61410799 61410982 -40462187 - MLT1L LTR MaLR -43 572 374 865 173 0 0 chr13 61411408 61411535 -40461634 + FLAM_C SINE Alu 1 127 -16 305 291 50 78 chr13 61411543 61411722 -40461447 - L1M4 LINE L1 -2207 3939 3766 591 254 58 5 chr13 61412400 61412589 -40460580 + Charlie1 DNA MER1_type 42 240 -2521 * 610 157 8 8 chr13 61412573 61412707 -40460462 + Charlie1 DNA MER1_type 2622 2755 -6 1815 154 29 0 chr13 61413250 61413529 -40459640 - AluSx SINE Alu -25 287 1 1862 212 40 36 chr13 61413741 61414241 -40458928 - MLT1D LTR MaLR -3 502 1 198 0 0 0 chr13 61414335 61414357 -40458812 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7543 29 0 0 chr13 61414357 61415426 -40457743 - L1PA3 LINE L1 -18 6137 5069 3199 44 0 0 chr13 61415426 61415835 -40457334 + L1PA3 LINE L1 4655 5063 -1083 241 301 124 18 chr13 61417600 61417713 -40455456 + L2 LINE L2 3189 3313 0 2174 112 10 6 chr13 61418438 61418750 -40454419 + AluSq SINE Alu 1 313 0 1551 273 31 27 chr13 61418767 61418877 -40454292 - L1ME LINE L1 -5311 759 651 2289 189 19 2 chr13 61418877 61419296 -40453873 - MSTB LTR MaLR 0 426 1 1551 273 31 27 chr13 61419296 61419705 -40453464 - L1ME LINE L1 -5419 651 238 445 297 77 39 chr13 61419824 61420006 -40453163 + MIR3 SINE MIR 18 206 -2 583 187 54 60 chr13 61420046 61420066 -40453103 - L1MA10 LINE L1 -1 6333 6314 406 249 54 99 chr13 61420066 61420287 -40452882 - L1ME1 LINE L1 -8 6158 5948 * 755 201 47 4 chr13 61420275 61420533 -40452636 - L1ME1 LINE L1 -699 5479 5204 4527 64 20 2 chr13 61420538 61421545 -40451624 - MER11A LTR ERVK 0 1266 1 402 240 10 10 chr13 61421593 61421689 -40451480 + MLT1H1 LTR MaLR 450 545 -10 225 188 16 0 chr13 61423221 61423285 -40449884 - L1ME4a LINE L1 -5 6116 6052 2244 116 3 0 chr13 61423441 61423752 -40449417 + AluSx SINE Alu 1 312 0 353 304 92 26 chr13 61424017 61424290 -40448879 - L1ME LINE L1 -431 5690 5400 208 220 0 20 chr13 61424745 61424795 -40448374 + MER5B DNA MER1_type 1 49 -129 1330 192 69 67 chr13 61424838 61425319 -40447850 - LTR36 LTR ERV1 -8 603 63 424 252 14 50 chr13 61425330 61425469 -40447700 + MER5B DNA MER1_type 45 178 0 221 234 125 70 chr13 61426431 61426559 -40446610 + MIR SINE MIR 87 221 -41 2245 221 133 34 chr13 61426575 61427588 -40445581 - L1ME2 LINE L1 -19 6214 5112 1732 292 55 10 chr13 61427579 61428550 -40444619 - L1ME2 LINE L1 -4915 1400 399 * 1010 282 97 28 chr13 61428692 61429444 -40443725 - L1MEc LINE L1 -4333 2063 1260 21 0 0 0 chr13 61429804 61429825 -40443344 + AT_rich Low_complexity Low_complexity 1 21 0 1821 138 72 0 chr13 61429825 61430116 -40443053 - AluSx SINE Alu 0 312 1 4440 153 35 23 chr13 61430128 61431319 -40441850 - L1MB1 LINE L1 -97 6071 4871 237 295 134 9 chr13 61432348 61432460 -40440709 - L2 LINE L2 -1 3271 3146 440 273 167 7 chr13 61433061 61433211 -40439958 - MER5A DNA MER1_type -6 183 10 511 285 13 32 chr13 61433652 61433810 -40439359 + MLT1H LTR MaLR 375 529 -20 382 299 172 6 chr13 61434019 61434193 -40438976 + MIR SINE MIR 52 254 -8 2065 115 18 0 chr13 61435413 61435699 -40437470 + AluSg SINE Alu 1 291 -19 1573 180 42 3 chr13 61436705 61436833 -40436336 + AluJb SINE Alu 1 123 -189 387 0 0 0 chr13 61436833 61436876 -40436293 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1573 180 42 3 chr13 61436876 61437030 -40436139 + AluJb SINE Alu 123 294 -18 968 216 15 9 chr13 61437799 61438085 -40435084 + MER2 DNA MER2_type 2 340 -5 185 254 236 9 chr13 61438236 61438346 -40434823 - MIR SINE MIR -45 217 83 2269 108 0 3 chr13 61438480 61438786 -40434383 - AluSg SINE Alu -5 305 1 182 294 206 0 chr13 61440874 61440976 -40432193 + L2 LINE L2 3190 3312 -1 222 297 63 18 chr13 61441386 61441497 -40431672 - L2 LINE L2 -15 3298 3183 841 225 143 14 chr13 61441518 61441798 -40431371 + L2 LINE L2 2987 3302 -11 1992 123 0 14 chr13 61441998 61442282 -40430887 - AluSx SINE Alu -4 308 29 193 280 20 0 chr13 61443139 61443189 -40429980 + L3 LINE CR1 1520 1570 -7 1820 116 49 11 chr13 61443189 61443474 -40429695 - AluSx SINE Alu -16 296 1 37 62 0 0 chr13 61444023 61444088 -40429081 + AT_rich Low_complexity Low_complexity 1 65 0 3305 108 36 0 chr13 61444312 61444805 -40428364 - MER75 DNA T2_type -3 511 1 21 57 0 0 chr13 61445248 61445283 -40427886 + AT_rich Low_complexity Low_complexity 1 35 0 327 260 192 0 chr13 61445363 61445509 -40427660 + MIR SINE MIR 89 262 0 1156 132 12 165 chr13 61445776 61446110 -40427059 - L1MA9 LINE L1 -6 6306 6024 2355 77 3 7 chr13 61446110 61446407 -40426762 - AluSq SINE Alu -17 296 1 2137 119 13 13 chr13 61446587 61446899 -40426270 - AluSx SINE Alu 0 312 1 2193 158 43 37 chr13 61446922 61447384 -40425785 - L1MA8 LINE L1 -12 6279 5815 359 339 31 23 chr13 61447403 61447533 -40425636 + L2 LINE L2 3142 3272 0 183 303 91 15 chr13 61447560 61447626 -40425543 + L2 LINE L2 3239 3309 -4 1502 157 21 0 chr13 61448380 61448616 -40424553 - AluJb SINE Alu -23 289 49 20146 26 0 0 chr13 61448617 61451782 -40421387 + L1PA2 LINE L1 2990 6154 -1 207 0 0 0 chr13 61451786 61451809 -40421360 + (A)n Simple_repeat Simple_repeat 1 23 0 306 104 125 0 chr13 61451809 61451857 -40421312 - AluJb SINE Alu -236 66 13 5408 237 60 20 chr13 61451935 61453364 -40419805 - L1M4 LINE L1 -5095 1760 310 1127 248 30 27 chr13 61453544 61453839 -40419330 - L1M4 LINE L1 -6553 306 11 454 292 20 62 chr13 61453889 61454084 -40419085 - MER91B DNA MER1_type -3 187 1 2852 228 36 47 chr13 61455210 61456067 -40417102 - L1ME1 LINE L1 -4 6162 5315 1459 218 78 24 chr13 61456170 61456193 -40416976 - L1ME1 LINE L1 -853 5293 5273 180 0 0 0 chr13 61456193 61456213 -40416956 + (TA)n Simple_repeat Simple_repeat 2 21 0 1459 218 78 24 chr13 61456213 61456621 -40416548 - L1ME1 LINE L1 -873 5273 4833 207 0 0 0 chr13 61456621 61456644 -40416525 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 1459 218 78 24 chr13 61456644 61456675 -40416494 - L1ME1 LINE L1 -1313 4833 4805 1581 234 112 7 chr13 61456701 61457320 -40415849 - L1ME1 LINE L1 -1389 4757 4074 201 39 0 0 chr13 61458082 61458108 -40415061 + (TG)n Simple_repeat Simple_repeat 1 26 0 2706 67 0 0 chr13 61459655 61459996 -40413173 - L1PA6 LINE L1 -9 6145 5805 710 288 5 21 chr13 61460481 61460672 -40412497 + MER5A DNA MER1_type 1 188 -1 12937 118 8 7 chr13 61461040 61463328 -40409841 - L1P4 LINE L1 -514 5654 3372 1903 169 3 0 chr13 61464127 61464428 -40408741 + AluJb SINE Alu 1 302 -10 528 314 29 58 chr13 61464518 61464602 -40408567 + HAL1 LINE L1 42 127 -2380 1731 186 41 76 chr13 61464602 61465035 -40408134 + MLT1C LTR MaLR 1 417 -50 2306 112 0 3 chr13 61465035 61465349 -40407820 + AluSq SINE Alu 1 313 0 1731 186 41 76 chr13 61465349 61465399 -40407770 + MLT1C LTR MaLR 417 467 0 528 314 29 58 chr13 61465399 61465626 -40407543 + HAL1 LINE L1 127 344 -2163 675 312 94 4 chr13 61468000 61468234 -40404935 - MIR SINE MIR 0 262 8 304 239 22 67 chr13 61468787 61468921 -40404248 + MER117 DNA MER1_type 1 128 -69 2247 148 36 64 chr13 61469885 61470325 -40402844 + MSTC LTR MaLR 1 428 0 2185 158 48 46 chr13 61470867 61471303 -40401866 - Tigger2 DNA MER2_type 0 2718 2282 1997 92 10 56 chr13 61471322 61471627 -40401542 - AluSq SINE Alu -18 295 5 1754 104 15 8 chr13 61471641 61471909 -40401260 - L1PB2 LINE L1 -8 6143 5874 349 159 14 29 chr13 61471909 61471978 -40401191 - Tigger2 DNA MER2_type -2650 68 1 2398 145 41 5 chr13 61474493 61474927 -40398242 + MER61C LTR ERV1 1 434 0 2480 56 7 0 chr13 61474941 61475243 -40397926 - AluY SINE Alu -7 304 1 340 294 118 36 chr13 61475686 61475907 -40397262 - L1M4 LINE L1 -3199 2947 2709 1395 215 110 80 chr13 61476787 61477298 -40395871 - MER51C LTR ERV1 0 640 115 225 294 168 0 chr13 61477616 61477735 -40395434 - MIR SINE MIR 0 262 124 959 172 116 0 chr13 61477741 61477974 -40395195 + L1MA9 LINE L1 6015 6274 -38 32 0 0 0 chr13 61478301 61478333 -40394836 + AT_rich Low_complexity Low_complexity 1 32 0 840 240 32 32 chr13 61481204 61481421 -40391748 - MIR SINE MIR -43 219 3 2288 95 7 0 chr13 61481468 61481764 -40391405 - AluSp SINE Alu -15 298 1 237 384 76 25 chr13 61481897 61482095 -40391074 + L2 LINE L2 2707 2914 -400 225 0 0 0 chr13 61482218 61482243 -40390926 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 291 265 92 10 chr13 61482244 61482342 -40390827 - L2 LINE L2 -1 3312 3207 1750 141 36 11 chr13 61482659 61482935 -40390234 + AluJb SINE Alu 30 312 0 2151 113 0 13 chr13 61483148 61483450 -40389719 - AluSq SINE Alu -15 298 1 207 0 0 0 chr13 61484162 61484185 -40388984 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr13 61484421 61484450 -40388719 + AT_rich Low_complexity Low_complexity 1 29 0 364 276 71 53 chr13 61484477 61484647 -40388522 - MIR SINE MIR -58 204 32 576 42 0 0 chr13 61484763 61484834 -40388335 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 450 263 104 70 chr13 61485114 61485532 -40387637 + L1M4 LINE L1 2837 3269 -2877 1605 154 96 0 chr13 61485566 61485861 -40387308 + AluSx SINE Alu 1 320 0 21 0 0 0 chr13 61485891 61485912 -40387257 + AT_rich Low_complexity Low_complexity 1 21 0 2611 146 15 68 chr13 61485912 61486454 -40386715 - L1PA16 LINE L1 -7 6159 5647 413 292 45 10 chr13 61486886 61487088 -40386081 + L1ME LINE L1 5589 5797 -324 * 773 199 112 0 chr13 61487086 61487247 -40385922 - L1MDa LINE L1 -6343 197 19 2370 86 0 13 chr13 61488662 61488976 -40384193 + AluSg SINE Alu 1 310 0 1222 227 59 68 chr13 61489241 61489699 -40383470 + MER110A LTR ERV1 11 464 -4 2461 122 2 28 chr13 61490429 61490822 -40382347 - L1PA14 LINE L1 0 6161 5779 404 355 106 33 chr13 61491135 61491558 -40381611 - L2 LINE L2 -1 3271 2818 363 313 194 5 chr13 61491702 61491919 -40381250 + L2 LINE L2 2488 2745 -569 1837 175 143 111 chr13 61491926 61492549 -40380620 + MLT1E1 LTR MaLR 4 646 -8 290 308 10 39 chr13 61492576 61492680 -40380489 + L2 LINE L2 3208 3308 -5 180 325 0 39 chr13 61493327 61493404 -40379765 + MIR SINE MIR 12 85 -177 414 257 29 9 chr13 61493488 61493593 -40379576 + MIR SINE MIR 108 214 -48 1869 153 31 22 chr13 61494999 61495359 -40377810 - MLT1A1 LTR MaLR -2 363 1 604 307 66 9 chr13 61496208 61496420 -40376749 + MIR SINE MIR 18 241 -21 481 298 169 14 chr13 61497397 61497692 -40375477 + L2 LINE L2 1896 2236 -1078 305 227 64 50 chr13 61497698 61497839 -40375330 - LTR16C LTR ERVL -9 482 340 550 323 221 17 chr13 61498145 61498733 -40374436 + L2 LINE L2 2223 2930 -384 188 306 0 16 chr13 61498984 61499046 -40374123 - MIR SINE MIR -21 241 181 199 304 0 0 chr13 61499236 61499292 -40373877 - L2 LINE L2 -1 3271 3216 240 304 43 68 chr13 61499467 61499674 -40373495 + L2 LINE L2 2776 2977 -337 461 283 130 32 chr13 61500232 61500639 -40372530 + L1MC/D LINE L1 4390 4836 -1310 2039 112 3 7 chr13 61500799 61501085 -40372084 + AluSx SINE Alu 13 297 -15 265 198 34 34 chr13 61501451 61501552 -40371617 + L1MC/D LINE L1 5318 5405 -775 259 239 131 31 chr13 61501684 61501814 -40371355 + L1MC/D LINE L1 5618 5760 -2048 23 0 0 0 chr13 61502121 61502144 -40371025 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 61503325 61503354 -40369815 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 61503518 61503543 -40369626 + AT_rich Low_complexity Low_complexity 1 25 0 602 96 64 0 chr13 61503658 61503815 -40369354 + (TA)n Simple_repeat Simple_repeat 2 168 0 2110 114 0 14 chr13 61503815 61504104 -40369065 - AluSg SINE Alu -23 287 3 1449 193 90 3 chr13 61504145 61504466 -40368703 - L1MDb LINE L1 -5257 1152 804 * 2705 224 45 6 chr13 61504453 61505090 -40368079 - L1MB8 LINE L1 -39 6139 5478 1931 263 63 20 chr13 61505111 61505777 -40367392 - L1MDb LINE L1 -5593 816 9 352 364 77 0 chr13 61505777 61505920 -40367249 + L2 LINE L2 3118 3271 -1 2594 96 31 6 chr13 61506173 61506528 -40366641 - THE1B LTR MaLR 0 364 1 207 0 0 0 chr13 61507748 61507771 -40365398 + (A)n Simple_repeat Simple_repeat 1 23 0 1165 240 9 0 chr13 61508244 61508477 -40364692 + Tigger5 DNA MER2_type 1 235 -2088 * 1283 150 4 9 chr13 61508475 61508702 -40364467 + Tigger5 DNA MER2_type 2085 2310 -13 376 296 136 37 chr13 61509128 61509371 -40363798 + L1MEd LINE L1 562 828 -5291 15022 133 16 12 chr13 61509371 61511775 -40361394 - Tigger1 DNA MER2_type -1 2417 6 302 181 30 23 chr13 61511922 61512055 -40361114 + (TG)n Simple_repeat Simple_repeat 1 134 0 882 280 61 39 chr13 61512190 61512244 -40360925 + L1MEd LINE L1 2349 2400 -3729 1196 212 31 99 chr13 61512244 61512636 -40360533 + MLT1A1 LTR MaLR 1 365 0 882 280 61 39 chr13 61512636 61512787 -40360382 + L1MEd LINE L1 2400 2546 -3583 2015 98 4 0 chr13 61512787 61513052 -40360117 + AluSx SINE Alu 2 267 -45 882 280 61 39 chr13 61513052 61513469 -40359700 + L1MEd LINE L1 2546 2986 -3143 24 0 0 0 chr13 61513864 61513888 -40359281 + AT_rich Low_complexity Low_complexity 1 24 0 373 339 29 14 chr13 61514063 61514340 -40358829 + L1MEd LINE L1 907 1187 -4932 1510 261 89 13 chr13 61514712 61515172 -40357997 - MLT1F LTR MaLR 0 542 48 302 236 54 61 chr13 61515445 61515593 -40357576 + L1M2 LINE L1 2735 2881 -3968 27 0 0 0 chr13 61515748 61515775 -40357394 + AT_rich Low_complexity Low_complexity 1 27 0 322 276 23 0 chr13 61515823 61515910 -40357259 - L1MC4 LINE L1 -1339 6703 6615 267 233 47 0 chr13 61515917 61516003 -40357166 + L1MC4 LINE L1 6614 6703 -1339 203 218 18 0 chr13 61516007 61516062 -40357107 + (TA)n Simple_repeat Simple_repeat 2 57 0 242 333 0 0 chr13 61516068 61516158 -40357011 + L1MC4 LINE L1 6614 6703 -1339 408 309 0 0 chr13 61516165 61516327 -40356842 + (TATG)n Simple_repeat Simple_repeat 3 164 0 231 245 0 82 chr13 61516338 61516436 -40356733 + L1MC4 LINE L1 6614 6703 -1339 251 73 49 0 chr13 61516440 61516481 -40356688 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 247 283 0 22 chr13 61516484 61516576 -40356593 + L1MC4 LINE L1 6614 6703 -1339 221 261 0 0 chr13 61516576 61516622 -40356547 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 312 260 0 62 chr13 61516622 61516718 -40356451 + L1MC4 LINE L1 6614 6703 -1339 * 315 296 23 0 chr13 61516676 61516764 -40356405 - L1MC4 LINE L1 -1339 6703 6614 285 182 0 0 chr13 61516765 61516820 -40356349 + (TA)n Simple_repeat Simple_repeat 1 55 0 528 296 31 15 chr13 61516852 61517112 -40356057 + L1M4 LINE L1 4495 4758 -1388 322 272 12 0 chr13 61517217 61517298 -40355871 - L1ME LINE L1 -527 5637 5556 581 273 43 60 chr13 61517509 61517908 -40355261 + L1M4 LINE L1 4888 5279 -867 1562 209 23 43 chr13 61518092 61518490 -40354679 + MLT1B LTR MaLR 1 390 0 191 86 0 29 chr13 61518510 61518545 -40354624 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 828 59 0 34 chr13 61518545 61518663 -40354506 + L1PA7 LINE L1 6041 6154 0 1756 210 34 68 chr13 61518826 61519354 -40353815 + MER67D LTR ERV1 1 510 -4 243 261 15 15 chr13 61521170 61521235 -40351934 - L2 LINE L2 -4 3309 3245 23 0 0 0 chr13 61522186 61522209 -40350960 + AT_rich Low_complexity Low_complexity 1 23 0 2502 151 78 11 chr13 61523469 61523933 -40349236 - LOR1a LTR ERV1 0 497 3 2143 113 3 16 chr13 61524414 61524724 -40348445 + AluSx SINE Alu 4 309 -3 431 363 60 4 chr13 61524993 61525241 -40347928 - L2 LINE L2 -527 2787 2526 229 340 154 6 chr13 61525867 61526029 -40347140 + MIR3 SINE MIR 22 207 -1 21 57 0 0 chr13 61526629 61526664 -40346505 + AT_rich Low_complexity Low_complexity 1 35 0 1999 122 3 26 chr13 61526778 61527082 -40346087 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr13 61528532 61528553 -40344616 + AT_rich Low_complexity Low_complexity 1 21 0 571 268 80 26 chr13 61529106 61529445 -40343724 + L1MC5 LINE L1 7391 7747 -214 192 369 15 0 chr13 61530326 61530391 -40342778 - L2 LINE L2 -25 3247 3182 338 231 111 37 chr13 61530924 61531032 -40342137 + L2 LINE L2 3196 3311 -2 2123 165 84 0 chr13 61531463 61531856 -40341313 - MSTB LTR MaLR 0 426 1 2570 117 6 0 chr13 61531912 61532272 -40340897 - THE1B LTR MaLR -2 362 1 293 306 113 6 chr13 61532707 61532867 -40340302 + MIR SINE MIR 86 262 0 196 301 92 37 chr13 61533060 61533223 -40339946 - MIR3 SINE MIR -17 191 20 279 278 14 14 chr13 61534960 61535032 -40338137 + MER5A DNA MER1_type 118 189 0 207 100 0 0 chr13 61535780 61535810 -40337359 + (TC)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr13 61536154 61536182 -40336987 + AT_rich Low_complexity Low_complexity 1 28 0 286 239 23 23 chr13 61536470 61536558 -40336611 - L1ME LINE L1 -307 5814 5727 25 65 0 0 chr13 61537345 61537391 -40335778 + AT_rich Low_complexity Low_complexity 1 46 0 480 16 0 0 chr13 61537487 61537549 -40335620 + L1PA2 LINE L1 6094 6155 0 234 283 112 16 chr13 61538725 61538976 -40334193 - HAL1 LINE L1 -1320 1187 913 1943 148 6 29 chr13 61539034 61539345 -40333824 - AluSx SINE Alu -5 307 4 2403 77 0 0 chr13 61539366 61539677 -40333492 - AluY SINE Alu 0 311 1 311 270 63 92 chr13 61539877 61540322 -40332847 - HAL1 LINE L1 -1985 522 91 293 183 0 14 chr13 61540977 61541048 -40332121 + CT-rich Low_complexity Low_complexity 2 71 0 381 357 36 15 chr13 61541116 61541312 -40331857 - L3b LINE CR1 -184 1399 1200 12241 168 24 30 chr13 61541952 61544581 -40328588 - L1MA4 LINE L1 -1 6299 3678 197 33 33 0 chr13 61544581 61544611 -40328558 + (TTG)n Simple_repeat Simple_repeat 3 33 0 12241 168 24 30 chr13 61544611 61545639 -40327530 - L1MA4 LINE L1 -2622 3678 2646 2086 156 31 19 chr13 61545720 61546080 -40327089 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr13 61547010 61547045 -40326124 + AT_rich Low_complexity Low_complexity 1 35 0 1595 244 122 13 chr13 61547941 61548416 -40324753 + MLT1F LTR MaLR 16 542 0 27 0 0 0 chr13 61548506 61548533 -40324636 + AT_rich Low_complexity Low_complexity 1 27 0 230 170 0 38 chr13 61548568 61548621 -40324548 - L1MC4 LINE L1 -1339 6703 6653 * 2364 221 86 42 chr13 61548606 61549521 -40323648 - L1ME1 LINE L1 -76 6090 5127 22 56 0 0 chr13 61549787 61549823 -40323346 + AT_rich Low_complexity Low_complexity 1 36 0 325 138 31 15 chr13 61550659 61550724 -40322445 + C-rich Low_complexity Low_complexity 4 69 0 1817 133 26 7 chr13 61550730 61550880 -40322289 - AluSx SINE Alu -32 280 121 387 0 0 0 chr13 61550880 61550923 -40322246 + (TG)n Simple_repeat Simple_repeat 2 44 0 1817 133 26 7 chr13 61550923 61551043 -40322126 - AluSx SINE Alu -191 121 5 256 250 0 0 chr13 61551663 61551727 -40321442 + LTR33A LTR ERVL 440 503 -20 530 170 0 65 chr13 61551912 61552035 -40321134 - L1PB4 LINE L1 -4 6150 6035 * 584 51 25 0 chr13 61552030 61552109 -40321060 - L1P4 LINE L1 -617 5546 5466 * 5291 183 38 55 chr13 61552107 61552484 -40320685 - L1 LINE L1 -815 5331 4949 5543 22 0 0 chr13 61552484 61553125 -40320044 - L1PA2 LINE L1 0 6155 5515 5291 183 38 55 chr13 61553125 61554080 -40319089 - L1 LINE L1 -1197 4949 4022 335 276 35 81 chr13 61554887 61555148 -40318021 + L1M4 LINE L1 4450 4698 -1448 521 226 25 73 chr13 61555825 61556093 -40317076 + MSTC LTR MaLR 1 252 -144 444 245 118 59 chr13 61556823 61557027 -40316142 - MLT1L LTR MaLR -399 216 1 2251 174 58 19 chr13 61557580 61557994 -40315175 + MLT2B2 LTR ERVL 1 430 -85 5149 118 63 41 chr13 61558265 61558869 -40314300 - Tigger3b DNA MER2_type -1797 1231 642 334 0 0 42 chr13 61558869 61558917 -40314252 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 2213 66 0 18 chr13 61558919 61559205 -40313964 - AluY SINE Alu -30 281 1 5149 118 63 41 chr13 61559205 61559570 -40313599 - Tigger3b DNA MER2_type -2386 642 238 908 205 0 6 chr13 61559584 61559755 -40313414 + MER2 DNA MER2_type 11 180 -165 2512 155 22 0 chr13 61559764 61560170 -40312999 + MSTA LTR MaLR 13 427 -1 823 164 69 6 chr13 61560184 61560343 -40312826 + MER2 DNA MER2_type 176 344 -1 1184 190 19 0 chr13 61560351 61560562 -40312607 - Tigger3b DNA MER2_type -1014 217 3 23 33 0 0 chr13 61560885 61560915 -40312254 + AT_rich Low_complexity Low_complexity 1 30 0 221 0 35 0 chr13 61561838 61561867 -40311302 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 249 336 84 0 chr13 61561968 61562075 -40311094 + MIR3 SINE MIR 90 205 -3 384 22 0 0 chr13 61563483 61563528 -40309641 + (TG)n Simple_repeat Simple_repeat 2 46 0 2092 137 80 14 chr13 61563770 61564185 -40308984 - ERVL LTR ERVL -33 5731 5290 4991 41 26 12 chr13 61564556 61565197 -40307972 - L1PA7 LINE L1 -1 6153 5504 240 193 0 36 chr13 61566313 61566396 -40306773 + GA-rich Low_complexity Low_complexity 3 82 0 36 104 0 0 chr13 61566971 61567105 -40306064 + AT_rich Low_complexity Low_complexity 1 134 0 700 343 97 51 chr13 61567253 61568264 -40304905 + L2 LINE L2 1609 2665 -649 1625 126 0 4 chr13 61568302 61568541 -40304628 - Tigger3(Golem) DNA MER2_type -2 3027 2790 775 203 7 0 chr13 61568548 61568686 -40304483 - Tigger3(Golem) DNA MER2_type -2888 141 3 385 378 79 22 chr13 61568696 61569204 -40303965 + L2 LINE L2 2739 3270 -2 26 0 0 0 chr13 61569555 61569581 -40303588 + AT_rich Low_complexity Low_complexity 1 26 0 2216 164 105 12 chr13 61569584 61570011 -40303158 + MLT1C LTR MaLR 1 467 0 250 263 76 4 chr13 61570011 61570238 -40302931 + L1ME LINE L1 5605 5884 -237 3096 265 41 22 chr13 61570247 61571204 -40301965 + L1ME1 LINE L1 35 1009 -5387 299 214 45 71 chr13 61571212 61571293 -40301876 - Tigger5 DNA MER2_type 0 2323 2244 2420 62 0 7 chr13 61571293 61571597 -40301572 + AluY SINE Alu 1 302 -9 299 214 45 71 chr13 61571597 61571627 -40301542 - Tigger5 DNA MER2_type -79 2244 2215 246 122 0 24 chr13 61571619 61571660 -40301509 - Tigger5 DNA MER2_type -2268 55 16 * 362 208 14 14 chr13 61571663 61571735 -40301434 - Tigger5 DNA MER2_type 0 2323 2252 316 175 0 18 chr13 61571785 61571842 -40301327 - Tigger5 DNA MER2_type -2267 56 1 799 262 60 40 chr13 61571847 61572328 -40300841 + L1ME1 LINE L1 1010 1500 -4896 442 234 0 0 chr13 61572413 61572524 -40300645 - L1P LINE L1 -3266 2880 2770 504 273 51 23 chr13 61572525 61572741 -40300428 + L1ME1 LINE L1 5333 5554 -874 * 571 253 32 47 chr13 61572724 61573001 -40300168 + L1ME1 LINE L1 5959 6231 -4 2243 98 0 3 chr13 61573301 61573606 -40299563 - AluSg SINE Alu -6 304 1 1936 126 10 27 chr13 61575660 61575780 -40297389 + AluSx SINE Alu 1 122 -190 219 88 0 0 chr13 61575780 61575814 -40297355 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1936 126 10 27 chr13 61575814 61575987 -40297182 + AluSx SINE Alu 122 289 -23 748 108 0 0 chr13 61576124 61576235 -40296934 - L1P LINE L1 -1311 4835 4725 536 80 13 0 chr13 61576235 61576303 -40296866 + L1PA7 LINE L1 6075 6150 -4 2506 224 67 3 chr13 61576975 61577329 -40295840 + MER82 DNA MER2_type 22 429 -224 612 0 0 0 chr13 61577329 61577397 -40295772 + (TA)n Simple_repeat Simple_repeat 2 69 0 2506 224 67 3 chr13 61577397 61577622 -40295547 + MER82 DNA MER2_type 429 638 -15 410 317 53 76 chr13 61577924 61578321 -40294848 + MLT1J LTR MaLR 30 417 -94 272 188 16 0 chr13 61578407 61578471 -40294698 + CT-rich Low_complexity Low_complexity 3 67 0 341 308 45 19 chr13 61579014 61579170 -40293999 - MIR SINE MIR -50 212 53 283 277 125 9 chr13 61579488 61579600 -40293569 - L3b LINE CR1 -270 1313 1189 390 42 0 0 chr13 61579692 61579740 -40293429 + (TA)n Simple_repeat Simple_repeat 2 49 0 2101 127 0 0 chr13 61579742 61580033 -40293136 - AluSx SINE Alu -21 291 1 510 319 41 64 chr13 61580249 61580594 -40292575 + L2 LINE L2 2977 3313 0 2431 93 3 0 chr13 61580853 61581165 -40292004 - AluSp SINE Alu 0 313 1 347 222 66 72 chr13 61582347 61582433 -40290736 + L1MEd LINE L1 714 800 -5319 1941 154 7 0 chr13 61582433 61582725 -40290444 + AluSx SINE Alu 1 294 -18 347 222 66 72 chr13 61582725 61582805 -40290364 + L1MEd LINE L1 800 879 -5240 1362 276 26 32 chr13 61583271 61583738 -40289431 - LTR16B LTR ERVL 0 464 1 405 0 0 0 chr13 61584309 61584354 -40288815 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1181 100 5 9 chr13 61585191 61585418 -40287751 + (TCC)n Simple_repeat Simple_repeat 1 226 0 780 151 0 32 chr13 61585424 61585610 -40287559 + CT-rich Low_complexity Low_complexity 1 180 0 271 224 19 19 chr13 61585637 61585744 -40287425 + CT-rich Low_complexity Low_complexity 3 109 0 23 86 0 0 chr13 61587156 61587214 -40285955 + AT_rich Low_complexity Low_complexity 1 58 0 2127 163 72 8 chr13 61588803 61589203 -40283966 + MSTB LTR MaLR 1 426 0 489 218 31 122 chr13 61589652 61589881 -40283288 - L2 LINE L2 -9 3304 3097 2226 118 7 0 chr13 61590984 61591290 -40281879 + AluSp SINE Alu 1 308 -5 268 200 18 0 chr13 61591848 61591903 -40281266 + MIR SINE MIR 195 250 -12 528 231 59 43 chr13 61592187 61592442 -40280727 - L1MC5 LINE L1 -58 7903 7645 1778 170 0 3 chr13 61592461 61592750 -40280419 + AluSx SINE Alu 1 288 -24 180 77 0 0 chr13 61592753 61592779 -40280390 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 302 321 100 21 chr13 61593188 61593328 -40279841 + L1ME LINE L1 902 1052 -5582 877 253 173 43 chr13 61593499 61593798 -40279371 + L1ME LINE L1 875 1134 -5455 333 0 0 0 chr13 61593798 61593835 -40279334 + (TA)n Simple_repeat Simple_repeat 2 38 0 877 253 173 43 chr13 61593835 61594306 -40278863 + L1ME LINE L1 1134 1743 -4846 366 202 71 116 chr13 61594329 61594527 -40278642 - L1MC5 LINE L1 -812 7149 6961 2168 123 0 0 chr13 61594548 61594850 -40278319 - AluSg SINE Alu -8 302 1 729 320 76 53 chr13 61594905 61595770 -40277399 - L1 LINE L1 -1717 4429 3545 349 292 146 29 chr13 61595955 61596236 -40276933 - L1 LINE L1 -2972 3174 2861 1954 184 22 3 chr13 61596254 61596612 -40276557 - MLT1A1 LTR MaLR 0 365 1 326 259 156 65 chr13 61596872 61597135 -40276034 - L1 LINE L1 -3654 2492 2206 2194 119 10 0 chr13 61597160 61597470 -40275699 - AluSp SINE Alu 0 313 1 225 242 0 32 chr13 61597581 61597643 -40275526 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 24 32 0 0 chr13 61597838 61597869 -40275300 + AT_rich Low_complexity Low_complexity 1 31 0 365 332 48 9 chr13 61598013 61598242 -40274927 - HAL1b LINE L1 -719 629 392 639 248 52 149 chr13 61598265 61598729 -40274440 + LTR16A1 LTR ERVL 27 445 -12 575 227 98 0 chr13 61600731 61600863 -40272306 - MER58A DNA MER1_type 0 148 4 3607 162 11 2 chr13 61602024 61602655 -40270514 + L1MA6 LINE L1 5660 6296 -4 2088 124 10 3 chr13 61602773 61603071 -40270098 + AluSq SINE Alu 1 300 -13 297 0 0 0 chr13 61603430 61603463 -40269706 + (T)n Simple_repeat Simple_repeat 1 33 0 2020 115 0 7 chr13 61603615 61603901 -40269268 + AluSx SINE Alu 1 284 -28 2731 169 31 14 chr13 61604099 61604307 -40268862 - L1MA10 LINE L1 -7 6327 6124 1349 164 117 44 chr13 61604307 61604581 -40268588 - AluSx SINE Alu -18 294 1 2731 169 31 14 chr13 61604581 61604924 -40268245 - L1MA10 LINE L1 -210 6124 5767 24 0 0 0 chr13 61606487 61606511 -40266658 + AT_rich Low_complexity Low_complexity 1 24 0 1923 252 43 27 chr13 61606974 61607538 -40265631 + L1MEc LINE L1 27 599 -5797 962 245 61 23 chr13 61607554 61607864 -40265305 + L1ME2 LINE L1 5645 5966 -198 564 223 43 0 chr13 61607994 61608133 -40265036 + L1MA10 LINE L1 6189 6333 -1 281 286 106 73 chr13 61609016 61609261 -40263908 - MIR SINE MIR -4 258 6 189 0 0 0 chr13 61609411 61609432 -40263737 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 458 276 14 99 chr13 61611518 61611660 -40261509 + MIR SINE MIR 56 174 -88 2093 123 3 0 chr13 61611660 61611945 -40261224 - AluSx SINE Alu -26 286 1 458 276 14 99 chr13 61611945 61612023 -40261146 + MIR SINE MIR 174 257 -5 189 0 0 0 chr13 61612421 61612442 -40260727 + (CA)n Simple_repeat Simple_repeat 2 22 0 188 231 0 0 chr13 61613927 61613966 -40259203 - MIR SINE MIR -64 144 106 2583 40 0 3 chr13 61614068 61614369 -40258800 - AluY SINE Alu -7 304 5 1182 184 108 177 chr13 61614430 61614641 -40258528 + MER67C LTR ERV1 1 225 -289 1985 47 0 12 chr13 61614641 61614895 -40258274 - L1PA5 LINE L1 -2 6152 5902 1182 184 108 177 chr13 61614895 61615232 -40257937 + MER67C LTR ERV1 225 511 -3 2147 112 6 19 chr13 61615314 61615626 -40257543 + AluSx SINE Alu 1 308 -4 1781 137 23 23 chr13 61616289 61616595 -40256574 - MLT1C LTR MaLR -4 463 158 457 332 37 33 chr13 61616648 61616892 -40256277 + MIR SINE MIR 18 262 0 47 0 0 0 chr13 61617664 61617711 -40255458 + AT_rich Low_complexity Low_complexity 1 47 0 616 253 98 65 chr13 61618340 61618735 -40254434 - MLT1J LTR MaLR -26 562 92 441 367 38 23 chr13 61619086 61619350 -40253819 + LTR33 LTR ERVL 1 268 -253 4705 174 44 42 chr13 61619387 61620899 -40252270 + L1MA4 LINE L1 4753 6290 -10 1599 156 95 12 chr13 61620924 61621270 -40251899 + L1MA9 LINE L1 5938 6312 0 786 231 51 14 chr13 61621361 61621655 -40251514 + L1MC5 LINE L1 7622 7926 -35 362 291 63 8 chr13 61621798 61621925 -40251244 - MIR SINE MIR -89 173 40 240 333 71 91 chr13 61622114 61622576 -40250593 - L2 LINE L2 0 3272 2820 240 382 126 37 chr13 61622826 61623373 -40249796 + L2 LINE L2 2378 2973 -341 443 91 34 11 chr13 61624420 61624508 -40248661 + GA-rich Low_complexity Low_complexity 1 90 0 579 315 97 55 chr13 61624535 61626070 -40247099 - L1M4 LINE L1 -2174 3972 2242 23 33 0 0 chr13 61626428 61626458 -40246711 + AT_rich Low_complexity Low_complexity 1 30 0 6710 162 40 33 chr13 61627680 61628258 -40244911 - L1MB7 LINE L1 0 6308 5736 315 0 0 0 chr13 61628258 61628293 -40244876 + (CA)n Simple_repeat Simple_repeat 2 36 0 6710 162 40 33 chr13 61628293 61630062 -40243107 - L1MB7 LINE L1 -572 5736 3957 2151 129 0 0 chr13 61630062 61630365 -40242804 - AluSp SINE Alu -10 303 1 6710 162 40 33 chr13 61630365 61630489 -40242680 - L1MB7 LINE L1 -2351 3957 3835 1457 201 48 23 chr13 61630489 61630861 -40242308 - MSTA LTR MaLR 0 375 3 1889 194 55 2 chr13 61630861 61631295 -40241874 - L1MB7 LINE L1 -2305 3841 3385 743 258 97 45 chr13 61631678 61632171 -40240998 - L1MC4 LINE L1 0 8042 7524 1668 209 35 54 chr13 61632172 61632314 -40240855 + LTR52 LTR ERVL 1 144 -277 2454 140 42 7 chr13 61632314 61632742 -40240427 + MER65A LTR ERV1 1 443 -2 1668 209 35 54 chr13 61632742 61633025 -40240144 + LTR52 LTR ERVL 144 418 -3 294 288 122 7 chr13 61633040 61633179 -40239990 - L1MC4 LINE L1 -531 7511 7357 37 23 0 0 chr13 61633483 61633527 -40239642 + AT_rich Low_complexity Low_complexity 1 44 0 2250 100 7 7 chr13 61634048 61634357 -40238812 - AluSc SINE Alu 0 309 1 363 23 0 0 chr13 61634636 61634680 -40238489 + (CA)n Simple_repeat Simple_repeat 2 45 0 228 245 0 0 chr13 61636967 61637016 -40236153 + CT-rich Low_complexity Low_complexity 2 50 0 326 42 21 0 chr13 61637016 61637064 -40236105 + (CA)n Simple_repeat Simple_repeat 1 49 0 347 278 86 62 chr13 61638569 61638731 -40234438 + MIR SINE MIR 94 259 -3 21 0 0 0 chr13 61638783 61638804 -40234365 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 61638873 61638903 -40234266 + AT_rich Low_complexity Low_complexity 1 30 0 453 333 75 0 chr13 61638961 61639135 -40234034 + MIR SINE MIR 5 191 -71 351 289 67 0 chr13 61639615 61639719 -40233450 - MIR SINE MIR -70 192 82 2041 150 30 35 chr13 61640037 61640403 -40232766 - THE1B LTR MaLR 0 364 1 11190 111 6 6 chr13 61640403 61641981 -40231188 - THE1B-int LTR MaLR 0 1580 2 1864 162 36 38 chr13 61641982 61642347 -40230822 - THE1B LTR MaLR 0 364 1 1382 200 146 12 chr13 61642379 61642714 -40230455 + MLT1B LTR MaLR 1 380 -10 805 276 0 36 chr13 61645972 61646197 -40226972 - MER58A DNA MER1_type -6 218 2 384 315 9 0 chr13 61646300 61646408 -40226761 - L2 LINE L2 0 3272 3164 1867 60 11 34 chr13 61646599 61646868 -40226301 + L1PA7 LINE L1 5890 6152 -2 290 314 8 32 chr13 61647009 61647133 -40226036 - MIR3 SINE MIR -3 205 85 19178 68 5 1 chr13 61648258 61651606 -40221563 - L1PA5 LINE L1 -4 6150 2794 1318 268 84 25 chr13 61651741 61652291 -40220878 + L1ME3A LINE L1 5468 6052 -118 2354 75 7 0 chr13 61652294 61652586 -40220583 - AluSx SINE Alu -18 294 1 21 0 0 0 chr13 61655066 61655087 -40218082 + AT_rich Low_complexity Low_complexity 1 21 0 1267 202 120 24 chr13 61655775 61656116 -40217053 + MLT1A2 LTR MaLR 1 374 0 3005 198 25 63 chr13 61656116 61656888 -40216281 + MLT1B-int LTR MaLR 1 742 -629 2604 105 3 0 chr13 61656990 61657353 -40215816 + THE1B LTR MaLR 1 364 0 235 241 58 0 chr13 61657365 61657452 -40215717 + MLT1B-int LTR MaLR 676 767 -968 2002 228 72 15 chr13 61657536 61657982 -40215187 + MLT1B-int LTR MaLR 1261 1580 0 1399 183 58 66 chr13 61657982 61658375 -40214794 + MLT1B LTR MaLR 1 390 0 1147 275 106 37 chr13 61658384 61659630 -40213539 + L1M4 LINE L1 3800 5131 -1015 1890 107 31 73 chr13 61659759 61660076 -40213093 + AluSx SINE Alu 1 304 -8 291 402 0 0 chr13 61660107 61660214 -40212955 + L2 LINE L2 3152 3258 -14 347 373 91 28 chr13 61660258 61660765 -40212404 - L2 LINE L2 -1700 1614 1076 2285 156 41 5 chr13 61660808 61661219 -40211950 - MSTA LTR MaLR -2 426 1 188 344 108 19 chr13 61661594 61661751 -40211418 - L2 LINE L2 -2736 578 408 1293 267 58 20 chr13 61661770 61662215 -40210954 + MLT1C LTR MaLR 1 462 -5 332 292 0 58 chr13 61662222 61662342 -40210827 - MER94 DNA DNA -9 125 13 200 339 62 41 chr13 61662373 61662568 -40210601 - L2 LINE L2 -2939 375 177 422 325 122 34 chr13 61662844 61663081 -40210088 + L3 LINE CR1 1194 1451 -126 266 254 15 15 chr13 61663991 61664058 -40209111 - L2 LINE L2 0 3272 3206 844 163 21 14 chr13 61664096 61664359 -40208810 + FRAM SINE Alu 21 284 0 189 253 246 68 chr13 61664366 61664647 -40208522 - L2 LINE L2 -94 3219 2889 2995 109 23 9 chr13 61665536 61665976 -40207193 - MLT2A2 LTR ERVL -5 448 3 401 198 118 75 chr13 61666172 61666359 -40206810 - L1MC5 LINE L1 -33 7928 7734 223 345 0 0 chr13 61666933 61666991 -40206178 - MIR SINE MIR -89 119 62 8128 77 14 1 chr13 61667079 61668152 -40205017 - L1P LINE L1 -5049 1097 11 * 19451 39 3 2 chr13 61668146 61670711 -40202458 + L1P2 LINE L1 2969 5537 -618 3128 71 2 111 chr13 61673233 61673360 -40199809 - L1PB2 LINE L1 -2 6149 6010 2191 127 3 0 chr13 61673360 61673660 -40199509 - AluSg SINE Alu -9 301 1 3128 71 2 111 chr13 61673660 61674026 -40199143 - L1PB2 LINE L1 -141 6010 5710 730 221 44 0 chr13 61674624 61674782 -40198387 - MER69A DNA AcHobo -3 174 10 2224 119 0 0 chr13 61674842 61675137 -40198032 + AluSc SINE Alu 1 295 -14 244 209 127 70 chr13 61675902 61676060 -40197109 + MLT1K LTR MaLR 11 177 -411 272 281 0 21 chr13 61676231 61676327 -40196842 + LTR67 LTR ERVL 457 550 -7 26 74 0 0 chr13 61676758 61676812 -40196357 + AT_rich Low_complexity Low_complexity 1 54 0 288 0 0 0 chr13 61678281 61678313 -40194856 + (TG)n Simple_repeat Simple_repeat 2 33 0 795 270 65 8 chr13 61679753 61680016 -40193153 + LTR33A LTR ERVL 243 520 -3 2036 113 80 152 chr13 61680257 61680718 -40192451 - MSTA LTR MaLR 0 428 1 347 209 154 27 chr13 61680746 61680856 -40192313 - LTR16C LTR ERVL 0 491 368 2225 217 56 6 chr13 61680867 61681346 -40191823 - MLT1D LTR MaLR -2 503 1 1652 53 0 14 chr13 61681728 61681937 -40191232 - L1PA7 LINE L1 -247 5907 5702 1894 61 4 0 chr13 61681937 61682165 -40191004 + L1PA7 LINE L1 5925 6154 0 2496 77 0 3 chr13 61682486 61682798 -40190371 + AluY SINE Alu 1 311 0 315 290 71 62 chr13 61683132 61683470 -40189699 + L1MC/D LINE L1 5397 5737 -2071 520 289 65 83 chr13 61684136 61684569 -40188600 + HAL1 LINE L1 44 468 -2039 661 241 6 30 chr13 61684603 61684769 -40188400 + MER105 DNA DNA 1 162 -42 513 279 68 95 chr13 61684809 61685293 -40187876 + HAL1 LINE L1 479 949 -1558 294 271 42 10 chr13 61685279 61685375 -40187794 + HAL1 LINE L1 2399 2497 -10 * 1354 259 96 46 chr13 61686891 61687412 -40185757 - MLT1H LTR MaLR -2 547 1 1032 206 92 0 chr13 61687466 61687704 -40185465 + L1MD3 LINE L1 7731 7990 -5 311 253 53 21 chr13 61688306 61688401 -40184768 + MLT1K LTR MaLR 149 246 -342 562 202 147 25 chr13 61688482 61688680 -40184489 + MLT1K LTR MaLR 367 588 0 26 0 0 0 chr13 61690477 61690503 -40182666 + AT_rich Low_complexity Low_complexity 1 26 0 335 283 17 17 chr13 61690697 61690817 -40182352 + MIR SINE MIR 139 258 -4 353 335 30 30 chr13 61691922 61692089 -40181080 - L2 LINE L2 0 3272 3106 266 258 31 113 chr13 61692096 61692198 -40180971 - L2 LINE L2 -528 2786 2700 2063 148 0 3 chr13 61692198 61692501 -40180668 + AluSx SINE Alu 1 302 -10 266 258 31 113 chr13 61692501 61692557 -40180612 - L2 LINE L2 -614 2700 2641 1366 174 44 49 chr13 61692558 61692896 -40180273 - MLT2B1 LTR ERVL -91 429 1 2947 205 27 15 chr13 61693294 61693841 -40179328 + MLT2B3 LTR ERVL 1 554 0 270 298 128 0 chr13 61693955 61694049 -40179120 - MIR SINE MIR -75 133 28 36 23 0 0 chr13 61694334 61694377 -40178792 + AT_rich Low_complexity Low_complexity 1 43 0 571 259 50 0 chr13 61694492 61694631 -40178538 - MIR SINE MIR -115 147 2 362 158 0 0 chr13 61696997 61697054 -40176115 - MSTA LTR MaLR 0 428 372 26 0 0 0 chr13 61697054 61697080 -40176089 + AT_rich Low_complexity Low_complexity 1 26 0 1360 49 6 0 chr13 61697144 61697306 -40175863 - L1PA5 LINE L1 0 6154 5992 2090 146 31 14 chr13 61697320 61697677 -40175492 - MSTA LTR MaLR -58 370 8 393 136 0 0 chr13 61698648 61698714 -40174455 + (CA)n Simple_repeat Simple_repeat 2 67 0 330 203 0 43 chr13 61698756 61698825 -40174344 - MER96 DNA MER1_type? -102 73 8 394 328 113 5 chr13 61699264 61699413 -40173756 - MIR SINE MIR 0 262 86 2271 203 60 9 chr13 61699413 61699861 -40173308 - LTR32 LTR ERVL 0 471 1 394 328 113 5 chr13 61699861 61699906 -40173263 - MIR SINE MIR -176 86 47 707 267 34 10 chr13 61700946 61701152 -40172017 + LTR16C LTR ERVL 263 473 -18 264 242 137 0 chr13 61701623 61701718 -40171451 + MIR SINE MIR 143 250 -12 2185 132 3 0 chr13 61702782 61703092 -40170077 + AluSx SINE Alu 1 311 -1 215 304 52 26 chr13 61703377 61703492 -40169677 - L3 LINE CR1 -28 1549 1432 268 348 45 13 chr13 61703531 61703686 -40169483 - L3 LINE CR1 -332 1245 1086 197 128 0 26 chr13 61704332 61704371 -40168798 + (GGAA)n Simple_repeat Simple_repeat 2 39 0 264 102 34 17 chr13 61704728 61704787 -40168382 + T-rich Low_complexity Low_complexity 5 64 0 218 331 31 39 chr13 61705418 61705548 -40167621 - L2 LINE L2 -7 3306 3178 2008 117 18 33 chr13 61705873 61706207 -40166962 - L1MC1 LINE L1 0 6333 6005 2994 70 0 0 chr13 61706388 61706743 -40166426 + THE1A LTR MaLR 1 355 0 12390 96 9 2 chr13 61706743 61708309 -40164860 + THE1A-int LTR MaLR 1 1577 -3 2650 102 6 28 chr13 61708312 61708675 -40164494 + THE1A LTR MaLR 1 355 0 560 328 31 5 chr13 61709115 61709310 -40163859 - MIR SINE MIR -9 253 54 2860 218 62 65 chr13 61710362 61710490 -40162679 + Zaphod DNA AcHobo 89 216 -3815 2301 119 47 41 chr13 61710490 61710852 -40162317 + THE1B LTR MaLR 1 364 0 2860 218 62 65 chr13 61710852 61711720 -40161449 + Zaphod DNA AcHobo 216 1082 -2949 453 285 93 0 chr13 61711718 61711869 -40161300 + Zaphod DNA AcHobo 3867 4031 0 * 2504 104 33 33 chr13 61712480 61712844 -40160325 - THE1B LTR MaLR 0 364 1 590 238 6 70 chr13 61713958 61714062 -40159107 - MIR SINE MIR -2 260 170 2208 128 7 0 chr13 61714062 61714368 -40158801 - AluSq SINE Alu -5 308 1 590 238 6 70 chr13 61714368 61714435 -40158734 - MIR SINE MIR -92 170 100 322 301 20 7 chr13 61714492 61714638 -40158531 + MER104 DNA Tc2 15 162 -18 23 78 0 0 chr13 61714722 61714773 -40158396 + AT_rich Low_complexity Low_complexity 1 51 0 1207 259 105 25 chr13 61714808 61715256 -40157913 + MLT1J LTR MaLR 28 511 0 828 188 0 0 chr13 61715948 61716081 -40157088 + FLAM_C SINE Alu 1 133 0 463 256 90 0 chr13 61716090 61716223 -40156946 + MER96 DNA MER1_type? 28 172 -3 2323 109 0 0 chr13 61716676 61716978 -40156191 - AluSc SINE Alu -7 302 1 3056 127 22 4 chr13 61717169 61717626 -40155543 + MLT1C LTR MaLR 3 467 0 1302 282 13 37 chr13 61717774 61718178 -40154991 + MLT1J LTR MaLR 61 494 -17 564 245 240 30 chr13 61718178 61718541 -40154628 + MLT1J LTR MaLR 2 440 -71 13750 123 48 4 chr13 61720345 61722949 -40150220 + Tigger4(Zombi) DNA MER2_type 1 2731 0 1908 187 5 68 chr13 61723193 61723530 -40149639 - MLT2D LTR ERVL 0 414 110 2368 89 0 15 chr13 61723530 61723866 -40149303 + L1PB1 LINE L1 5820 6150 -1 1908 187 5 68 chr13 61723866 61723966 -40149203 - MLT2D LTR ERVL -304 110 5 2385 96 3 0 chr13 61724435 61724736 -40148433 + AluSp SINE Alu 1 302 -11 2147 117 0 29 chr13 61725820 61726129 -40147040 + AluSx SINE Alu 1 300 -12 757 257 84 10 chr13 61726314 61726516 -40146653 + MIR SINE MIR 46 262 0 2109 112 7 3 chr13 61726627 61726922 -40146247 - AluSx SINE Alu -16 296 1 276 75 0 0 chr13 61727064 61727104 -40146065 + L1PA16 LINE L1 5723 5762 -404 347 200 14 0 chr13 61727225 61727295 -40145874 + MIR SINE MIR 80 150 -112 2148 139 21 13 chr13 61727300 61727682 -40145487 + L1PA16 LINE L1 5779 6163 -3 462 256 31 23 chr13 61727966 61728095 -40145074 + MIR SINE MIR 80 209 -53 246 136 0 0 chr13 61728109 61728153 -40145016 + (CAT)n Simple_repeat Simple_repeat 2 45 0 323 183 267 25 chr13 61728448 61728568 -40144601 - MIR3 SINE MIR -55 153 5 1960 155 0 7 chr13 61728886 61729182 -40143987 - AluSx SINE Alu -10 302 9 214 281 0 18 chr13 61729522 61729579 -40143590 + L2 LINE L2 3246 3301 -12 2164 283 193 11 chr13 61730003 61731063 -40142106 + L2 LINE L2 1276 2527 -787 1458 167 172 147 chr13 61731277 61731922 -40141247 - L1MD2 LINE L1 -38 6204 5544 1280 270 87 35 chr13 61731930 61732640 -40140529 + L2 LINE L2 2570 3313 0 8463 100 13 11 chr13 61732792 61734057 -40139112 + HSMAR1 DNA Mariner 20 1286 -1 1005 104 30 0 chr13 61734352 61734487 -40138682 - AluSg/x SINE Alu -15 297 159 287 286 0 67 chr13 61734737 61734842 -40138327 - MIR SINE MIR -145 117 20 202 289 35 78 chr13 61734948 61735090 -40138079 - MIR3 SINE MIR -71 137 2 658 222 70 16 chr13 61735452 61735637 -40137532 + MIR SINE MIR 68 262 0 189 0 0 0 chr13 61736033 61736054 -40137115 + (A)n Simple_repeat Simple_repeat 1 21 0 4399 125 29 70 chr13 61736776 61737770 -40135399 - L1PB4 LINE L1 -13 6143 5191 187 261 141 11 chr13 61739180 61739272 -40133897 - L2 LINE L2 -98 3215 3112 371 240 55 62 chr13 61739447 61739643 -40133526 - MLT1J2 LTR MaLR -11 442 266 2241 51 0 11 chr13 61741058 61741397 -40131772 + AluY SINE Alu 12 347 0 225 0 0 0 chr13 61741586 61741611 -40131558 + (A)n Simple_repeat Simple_repeat 1 25 0 466 307 6 6 chr13 61742082 61742261 -40130908 + (TG)n Simple_repeat Simple_repeat 1 179 0 837 114 8 0 chr13 61743029 61743161 -40130008 + L1MA10 LINE L1 6191 6323 -11 326 276 126 31 chr13 61743231 61743358 -40129811 - MIR SINE MIR -75 187 49 461 217 56 50 chr13 61743519 61743680 -40129489 - MIR SINE MIR -14 248 87 1587 261 160 55 chr13 61743680 61744995 -40128174 - L1MDa LINE L1 -5067 1473 21 229 369 60 12 chr13 61744999 61745083 -40128086 - MIR SINE MIR -168 94 7 2029 162 32 3 chr13 61745108 61745478 -40127691 - MLT1B LTR MaLR 0 390 10 24 67 0 0 chr13 61746292 61746337 -40126832 + AT_rich Low_complexity Low_complexity 1 45 0 270 295 34 0 chr13 61746548 61746641 -40126528 - MER5A DNA MER1_type -32 146 51 2273 130 28 3 chr13 61747076 61747431 -40125738 - THE1B LTR MaLR 0 364 1 998 207 10 5 chr13 61749928 61750131 -40123038 + MER20 DNA MER1_type 16 219 0 241 91 0 55 chr13 61750451 61750506 -40122663 + L1M LINE L1 5254 5305 -995 407 352 159 15 chr13 61750748 61751143 -40122026 + L2 LINE L2 2217 2668 -646 821 251 76 5 chr13 61752009 61752220 -40120949 - MIR SINE MIR -11 251 26 375 240 0 0 chr13 61752372 61752447 -40120722 + MIR SINE MIR 67 141 -121 320 302 126 5 chr13 61752977 61753192 -40119977 + MER112 DNA MER1_type 8 248 -12 2358 82 0 3 chr13 61753242 61753547 -40119622 - AluY SINE Alu -7 304 1 2293 101 3 0 chr13 61753550 61753856 -40119313 - AluSc SINE Alu -1 308 2 422 266 11 85 chr13 61754062 61754111 -40119058 + MIR SINE MIR 75 126 -136 1843 174 13 3 chr13 61754111 61754415 -40118754 + AluSx SINE Alu 2 308 -4 422 266 11 85 chr13 61754415 61754542 -40118627 + MIR SINE MIR 126 238 -24 375 98 0 0 chr13 61754661 61754722 -40118447 + (CA)n Simple_repeat Simple_repeat 1 61 0 216 0 0 0 chr13 61756457 61756481 -40116688 + (A)n Simple_repeat Simple_repeat 1 24 0 696 210 105 25 chr13 61756793 61756993 -40116176 + MIR SINE MIR 36 251 -11 321 310 243 16 chr13 61757145 61757597 -40115572 - L3 LINE CR1 -218 1359 805 1521 190 103 49 chr13 61758802 61759244 -40113925 + MER31B LTR ERV1 1 543 0 3596 218 42 60 chr13 61759294 61759686 -40113483 + MER31B-int LTR ERV1 15 412 -4524 3849 185 35 1 chr13 61759686 61760394 -40112775 + MER44D DNA MER2_type 1 604 -1 3596 218 42 60 chr13 61760394 61760992 -40112177 + MER31B-int LTR ERV1 412 988 -3948 2542 139 78 95 chr13 61761411 61761736 -40111433 - MER7C DNA MER2_type -2426 602 290 1154 80 0 0 chr13 61761736 61761886 -40111283 - L1PB1 LINE L1 -6 6145 5996 2542 139 78 95 chr13 61761886 61762172 -40110997 - MER7C DNA MER2_type -2738 290 1 304 285 252 33 chr13 61763287 61763529 -40109640 + HAL1 LINE L1 826 1120 -1387 1711 190 39 67 chr13 61763668 61763816 -40109353 - MER21B LTR ERV1 -1 862 711 1910 141 20 23 chr13 61763816 61764115 -40109054 - AluSx SINE Alu -14 298 1 1711 190 39 67 chr13 61764115 61764234 -40108935 - MER21B LTR ERV1 -152 711 590 1960 163 0 3 chr13 61764234 61764535 -40108634 - AluJo SINE Alu -12 300 1 1711 190 39 67 chr13 61764535 61764698 -40108471 - MER21B LTR ERV1 -273 590 443 209 274 20 0 chr13 61765167 61765218 -40107951 + GA-rich Low_complexity Low_complexity 5 56 0 819 201 73 19 chr13 61765245 61765521 -40107648 + L1MC5 LINE L1 6959 7247 -728 1506 191 35 85 chr13 61765653 61766277 -40106892 + L1MC5 LINE L1 7268 7860 -101 2022 156 12 6 chr13 61766286 61766632 -40106537 - MER7A DNA MER2_type 0 346 1 1912 136 7 14 chr13 61766686 61766981 -40106188 + AluSx SINE Alu 4 296 -16 3018 157 11 3 chr13 61767997 61768563 -40104606 + L1MA5 LINE L1 4443 5012 -1134 1954 114 15 81 chr13 61768568 61768964 -40104205 + L1MA5 LINE L1 5460 5829 -471 1720 171 7 10 chr13 61768965 61769258 -40103911 + AluSx SINE Alu 3 294 -18 2570 109 8 11 chr13 61769590 61769966 -40103203 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr13 61770323 61770344 -40102825 + AT_rich Low_complexity Low_complexity 1 21 0 318 226 35 0 chr13 61770385 61770500 -40102669 + (CATATA)n Simple_repeat Simple_repeat 6 124 0 704 212 0 8 chr13 61770529 61770661 -40102508 - AluJb SINE Alu -45 267 137 885 123 0 0 chr13 61771820 61771958 -40101211 + (TA)n Simple_repeat Simple_repeat 2 139 0 2215 87 3 7 chr13 61771962 61772251 -40100918 - AluSq SINE Alu -24 289 2 200 61 61 0 chr13 61772348 61772381 -40100788 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 1837 203 51 7 chr13 61772536 61772969 -40100200 - MLT1C LTR MaLR -10 457 6 2033 136 3 0 chr13 61773599 61773901 -40099268 - AluJb SINE Alu -9 303 1 846 243 88 61 chr13 61775164 61775575 -40097594 + MLT1J1 LTR MaLR 2 423 -23 2444 141 60 5 chr13 61775575 61775978 -40097191 + MSTB LTR MaLR 1 425 -1 300 167 0 0 chr13 61775978 61776050 -40097119 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 198 245 0 20 chr13 61777120 61777169 -40096000 - L2 LINE L2 -208 3064 3017 500 308 107 48 chr13 61777723 61778077 -40095092 + L2 LINE L2 2381 2755 -559 989 199 112 64 chr13 61778087 61778444 -40094725 + MLT1A2 LTR MaLR 1 374 0 2370 98 0 0 chr13 61778596 61778891 -40094278 - AluSq SINE Alu -18 295 1 208 315 18 45 chr13 61778940 61779051 -40094118 + L2 LINE L2 2988 3095 -218 1813 156 0 48 chr13 61779088 61779402 -40093767 - AluSx SINE Alu -13 299 1 1332 203 103 32 chr13 61779406 61779776 -40093393 + MLT1D LTR MaLR 108 503 -2 473 167 0 0 chr13 61781217 61781289 -40091880 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2026 241 53 6 chr13 61781311 61781968 -40091201 + L1M4 LINE L1 3802 4489 -1657 215 268 27 116 chr13 61782108 61782220 -40090949 + MIR SINE MIR 153 254 -8 1363 253 89 45 chr13 61782967 61783083 -40090086 - L1ME3A LINE L1 -3 6167 6058 2405 86 0 0 chr13 61783083 61783375 -40089794 + AluSg SINE Alu 1 292 -18 1363 253 89 45 chr13 61783375 61783923 -40089246 - L1ME3A LINE L1 -112 6058 5474 44 20 0 0 chr13 61784682 61784733 -40088436 + AT_rich Low_complexity Low_complexity 1 51 0 508 99 56 12 chr13 61784733 61784895 -40088274 + (TA)n Simple_repeat Simple_repeat 1 169 0 208 53 53 0 chr13 61784907 61784945 -40088224 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 25 51 0 0 chr13 61784945 61784984 -40088185 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 61785107 61785130 -40088039 + AT_rich Low_complexity Low_complexity 1 23 0 451 311 25 0 chr13 61785362 61785481 -40087688 - L2 LINE L2 -4 3309 3188 25 0 0 0 chr13 61785504 61785529 -40087640 + AT_rich Low_complexity Low_complexity 1 25 0 226 139 0 0 chr13 61786033 61786069 -40087100 + Alu SINE Alu 247 282 -20 3079 198 63 81 chr13 61786095 61787281 -40085888 + MER31-int LTR ERV1 1318 2481 -2455 2557 70 3 0 chr13 61787281 61787593 -40085576 - AluSp SINE Alu 0 313 1 3079 198 63 81 chr13 61787593 61787683 -40085486 + MER31-int LTR ERV1 2481 2571 -2365 2867 199 55 68 chr13 61787709 61787793 -40085376 + MER31-int LTR ERV1 2706 2790 -2146 2322 92 0 3 chr13 61787793 61788099 -40085070 - AluSq SINE Alu -8 305 1 2867 199 55 68 chr13 61788099 61789004 -40084165 + MER31-int LTR ERV1 2790 3682 -1254 231 61 0 0 chr13 61789645 61789678 -40083491 + (A)n Simple_repeat Simple_repeat 1 33 0 2055 106 6 48 chr13 61789932 61790243 -40082926 + AluSq SINE Alu 1 298 -15 2285 84 0 10 chr13 61790280 61790578 -40082591 + AluSq SINE Alu 6 300 -13 344 308 119 63 chr13 61791044 61791393 -40081776 + L1MEd LINE L1 841 1178 -1329 377 314 174 4 chr13 61791452 61791688 -40081481 + L1MC4a LINE L1 5787 6062 -1746 24 32 0 0 chr13 61792874 61792905 -40080264 + AT_rich Low_complexity Low_complexity 1 31 0 486 226 52 65 chr13 61793758 61793988 -40079181 + LTR37A LTR ERV1 78 304 -122 2268 116 3 0 chr13 61794043 61794336 -40078833 - AluSx SINE Alu -18 294 1 2398 71 3 0 chr13 61794441 61794736 -40078433 - AluY SINE Alu -15 296 1 576 250 45 34 chr13 61794746 61794922 -40078247 - MIR SINE MIR -43 219 42 196 279 213 0 chr13 61794949 61795010 -40078159 - MIR SINE MIR -185 77 4 902 138 0 0 chr13 61795479 61795602 -40077567 - FLAM_C SINE Alu -20 123 1 1454 116 0 0 chr13 61795782 61795980 -40077189 - AluSc SINE Alu -111 198 1 631 278 40 5 chr13 61797439 61797662 -40075507 - L1ME LINE L1 -299 5822 5592 262 254 0 16 chr13 61797668 61797731 -40075438 + (CA)n Simple_repeat Simple_repeat 2 63 0 373 264 153 31 chr13 61797731 61797894 -40075275 - L1ME LINE L1 -531 5590 5408 201 325 0 12 chr13 61799269 61799349 -40073820 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 257 279 49 49 chr13 61799519 61799641 -40073528 + MIR SINE MIR 100 221 -41 186 43 0 0 chr13 61799671 61799694 -40073475 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 337 261 0 0 chr13 61799700 61799769 -40073400 - L2 LINE L2 -19 3253 3185 21 0 0 0 chr13 61800254 61800275 -40072894 + AT_rich Low_complexity Low_complexity 1 21 0 38 37 0 49 chr13 61802108 61802190 -40070979 + AT_rich Low_complexity Low_complexity 1 78 0 21 57 0 0 chr13 61802241 61802276 -40070893 + AT_rich Low_complexity Low_complexity 1 35 0 2508 156 22 18 chr13 61802430 61802929 -40070240 - L1MA7 LINE L1 -3 6288 5788 21 57 0 0 chr13 61802968 61803003 -40070166 + AT_rich Low_complexity Low_complexity 1 35 0 1344 199 36 4 chr13 61803006 61803257 -40069912 + AluSx SINE Alu 1 259 -53 1119 155 53 21 chr13 61803380 61803567 -40069602 - AluJb SINE Alu -119 193 1 3177 193 115 31 chr13 61803616 61803771 -40069398 - L1MB4 LINE L1 0 6180 6039 1475 199 27 17 chr13 61803771 61804068 -40069101 + AluJo SINE Alu 1 300 -12 3177 193 115 31 chr13 61804068 61805408 -40067761 - L1MB4 LINE L1 -141 6039 4562 401 290 257 15 chr13 61805812 61806147 -40067022 - L3 LINE CR1 -26 1551 1136 190 270 63 70 chr13 61806944 61807105 -40066064 - MIR SINE MIR -35 227 66 1216 185 9 94 chr13 61807204 61807533 -40065636 - AluJb SINE Alu -1 301 1 558 160 73 20 chr13 61807867 61808017 -40065152 + L1MA5 LINE L1 6143 6300 0 1832 147 44 3 chr13 61808177 61808690 -40064479 + L1M2 LINE L1 4992 5524 -743 2169 92 11 0 chr13 61808693 61808977 -40064192 - AluSq SINE Alu -24 289 3 907 188 62 36 chr13 61809032 61809256 -40063913 - AluJo SINE Alu -81 231 2 1259 100 41 3 chr13 61810495 61810784 -40062385 - THE1C LTR MaLR 0 375 1 2317 113 22 22 chr13 61810828 61811192 -40061977 - THE1B LTR MaLR 0 364 1 614 219 134 12 chr13 61811679 61811843 -40061326 - MIR SINE MIR -77 185 2 971 33 0 0 chr13 61811988 61812109 -40061060 + L1PA11 LINE L1 5730 5850 -324 1345 235 72 46 chr13 61812109 61812606 -40060563 + LTR41 LTR ERVL 65 574 -199 303 297 231 26 chr13 61813331 61813526 -40059643 + MIR SINE MIR 17 251 -11 1243 178 59 118 chr13 61813567 61813706 -40059463 - MLT1C LTR MaLR -11 449 303 3668 120 2 11 chr13 61813706 61814238 -40058931 - MER1A DNA MER1_type 0 527 1 1243 178 59 118 chr13 61814238 61814586 -40058583 - MLT1C LTR MaLR -157 303 1 189 0 0 0 chr13 61815298 61815319 -40057850 + (TC)n Simple_repeat Simple_repeat 1 21 0 532 246 15 8 chr13 61815754 61815884 -40057285 + MIR SINE MIR 132 262 0 364 176 144 40 chr13 61816411 61816536 -40056633 + MER103 DNA DNA 11 148 -18 282 278 0 79 chr13 61816557 61816683 -40056486 + MIR SINE MIR 32 147 -61 570 286 0 82 chr13 61816906 61817137 -40056032 + MLT1K LTR MaLR 13 224 -364 201 152 0 0 chr13 61817188 61817221 -40055948 + GA-rich Low_complexity Low_complexity 1 33 0 2213 205 7 76 chr13 61817663 61818374 -40054795 + L1MD2 LINE L1 5314 5935 -255 1602 153 44 26 chr13 61818384 61818724 -40054445 - L1MA7 LINE L1 -6 6285 5940 2337 149 39 5 chr13 61818728 61819305 -40053864 + L1MA8 LINE L1 5115 5714 -577 599 240 64 80 chr13 61819323 61819420 -40053749 + L1MD2 LINE L1 5921 6018 -341 2360 94 0 0 chr13 61819420 61819717 -40053452 - AluSg SINE Alu -13 297 1 599 240 64 80 chr13 61819717 61819932 -40053237 + L1MD2 LINE L1 6018 6228 -131 * 861 161 104 0 chr13 61819926 61820118 -40053051 + L1PA16 LINE L1 5938 6149 -17 246 248 142 0 chr13 61820132 61820245 -40052924 + L1MD2 LINE L1 6214 6342 -17 14969 138 68 16 chr13 61820380 61823558 -40049611 + L1M1 LINE L1 844 4193 -3372 728 178 0 0 chr13 61823665 61823794 -40049375 - MER51A LTR ERV1 -505 129 1 1817 172 75 8 chr13 61823794 61824094 -40049075 + L1MA8 LINE L1 5904 6233 -58 375 23 0 0 chr13 61824094 61824138 -40049031 + (TA)n Simple_repeat Simple_repeat 2 45 0 1817 172 75 8 chr13 61824138 61824197 -40048972 + L1MA8 LINE L1 6233 6287 -4 2276 102 0 0 chr13 61824209 61824503 -40048666 - AluSx SINE Alu -18 294 1 292 287 25 82 chr13 61824943 61825187 -40047982 + L2 LINE L2 1744 1973 -1341 417 267 28 50 chr13 61825287 61825464 -40047705 + MLT1L LTR MaLR 82 246 -342 511 190 107 0 chr13 61825614 61825735 -40047434 + MLT1L LTR MaLR 481 614 -1 247 275 0 88 chr13 61825934 61826014 -40047155 - L2 LINE L2 -13 3300 3228 605 131 0 28 chr13 61826038 61826190 -40046979 + (TATATG)n Simple_repeat Simple_repeat 1 147 0 702 295 113 6 chr13 61826291 61826823 -40046346 - L1M4 LINE L1 -3301 2845 2257 461 252 204 0 chr13 61827153 61827359 -40045810 - MER102b DNA MER1_type -8 333 86 213 219 0 0 chr13 61827857 61827898 -40045271 + A-rich Low_complexity Low_complexity 5 45 0 1677 163 11 4 chr13 61827989 61828253 -40044916 - AluJo SINE Alu -46 266 1 442 338 83 22 chr13 61828386 61828614 -40044555 - MIR SINE MIR -17 245 4 2227 143 60 24 chr13 61829872 61830039 -40043130 + MSTA LTR MaLR 1 160 -268 1931 120 0 11 chr13 61830039 61830313 -40042856 - AluSx SINE Alu -2 310 40 2227 143 60 24 chr13 61830313 61830558 -40042611 + MSTA LTR MaLR 160 428 0 1366 209 130 55 chr13 61831684 61832154 -40041015 - MLT1D LTR MaLR 0 505 1 4476 147 30 50 chr13 61832607 61834147 -40039022 - L1MA6 LINE L1 -259 6041 4535 1626 118 25 25 chr13 61834148 61834427 -40038742 + L1MA6 LINE L1 6018 6296 -4 661 261 93 32 chr13 61834586 61834931 -40038238 + L1MC4a LINE L1 5800 6165 -1643 26 50 0 0 chr13 61834965 61835005 -40038164 + AT_rich Low_complexity Low_complexity 1 40 0 2379 77 0 13 chr13 61835602 61835902 -40037267 + AluSc SINE Alu 11 306 -3 464 220 15 140 chr13 61836330 61836530 -40036639 - MER5B DNA MER1_type 0 178 4 874 203 49 23 chr13 61836972 61837193 -40035976 - MER20 DNA MER1_type -1 218 1 1106 124 7 0 chr13 61837608 61837761 -40035408 - AluSg/x SINE Alu -26 286 133 783 166 0 0 chr13 61838289 61838434 -40034735 - L1MB3 LINE L1 -2 6181 6037 350 200 12 24 chr13 61838553 61838664 -40034505 + L1P LINE L1 5315 5408 -746 4884 139 42 31 chr13 61838790 61840214 -40032955 + L1MA8 LINE L1 4885 6289 -23 1523 197 39 49 chr13 61841178 61841568 -40031601 - MLT1B LTR MaLR -3 387 2 28 0 0 0 chr13 61841818 61841846 -40031323 + AT_rich Low_complexity Low_complexity 1 28 0 605 281 138 0 chr13 61842887 61843090 -40030079 - MIR SINE MIR -21 241 11 559 305 117 29 chr13 61843134 61843682 -40029487 + L1ME4a LINE L1 5272 5855 -266 219 220 495 0 chr13 61843796 61843905 -40029264 + MIR SINE MIR 15 177 -85 622 103 95 9 chr13 61844047 61844163 -40029006 + L1MA5 LINE L1 6173 6298 -2 310 284 90 54 chr13 61844650 61844872 -40028297 - MIR SINE MIR -25 237 8 301 190 0 17 chr13 61844876 61844933 -40028236 + MER103 DNA DNA 29 84 -82 1331 183 26 122 chr13 61844933 61845311 -40027858 - MLT1A1 LTR MaLR 0 365 1 237 241 86 0 chr13 61847031 61847089 -40026080 - L3 LINE CR1 -3 1574 1512 308 178 0 0 chr13 61847232 61847277 -40025892 + Alu SINE Alu 6 50 -250 203 295 91 43 chr13 61847404 61847614 -40025555 + L2 LINE L2 2517 2736 -578 21 0 0 0 chr13 61848562 61848583 -40024586 + AT_rich Low_complexity Low_complexity 1 21 0 1776 168 0 24 chr13 61849184 61849482 -40023687 + AluJo SINE Alu 5 295 -17 372 250 250 0 chr13 61850415 61850559 -40022610 + MIR SINE MIR 13 192 -70 223 336 19 29 chr13 61850552 61850656 -40022513 - MIR SINE MIR -73 135 33 * 241 317 106 16 chr13 61851069 61851192 -40021977 + L2 LINE L2 3139 3272 0 315 336 198 18 chr13 61851968 61852474 -40020695 + L2 LINE L2 880 1476 -1838 606 291 0 0 chr13 61852592 61852743 -40020426 - MIR SINE MIR -30 232 82 443 293 16 0 chr13 61852848 61852971 -40020198 - MIR SINE MIR -130 132 8 276 309 72 22 chr13 61853130 61853269 -40019900 + L2 LINE L2 3167 3312 -1 411 200 100 67 chr13 61854413 61854490 -40018679 + HAL1b LINE L1 60 133 -1215 1728 182 10 77 chr13 61854490 61854813 -40018356 + MLT1A1 LTR MaLR 1 295 -70 2403 73 3 0 chr13 61854813 61855115 -40018054 - AluY SINE Alu -8 303 1 1728 182 10 77 chr13 61855115 61855182 -40017987 + MLT1A1 LTR MaLR 295 365 0 411 200 100 67 chr13 61855182 61855254 -40017915 + HAL1b LINE L1 133 214 -1134 21 100 0 0 chr13 61855649 61855719 -40017450 + AT_rich Low_complexity Low_complexity 1 70 0 1393 262 73 5 chr13 61855967 61856364 -40016805 - MLT1F LTR MaLR 0 542 119 432 276 26 13 chr13 61856438 61856590 -40016579 + L1ME4a LINE L1 5529 5682 -439 27 49 0 0 chr13 61856613 61856654 -40016515 + AT_rich Low_complexity Low_complexity 1 41 0 924 209 20 64 chr13 61856699 61856948 -40016221 + HsTC2c DNA Tc2 9 246 -483 1551 224 16 8 chr13 61856950 61857330 -40015839 + L1MA9 LINE L1 2768 3150 -2996 4397 168 116 16 chr13 61857550 61858771 -40014398 + L1MA9 LINE L1 4941 6290 -22 1719 233 58 26 chr13 61858792 61859255 -40013914 + HsTC2c DNA Tc2 233 710 -19 318 207 0 35 chr13 61859394 61859481 -40013688 + L1PB4 LINE L1 6068 6151 -5 231 200 33 17 chr13 61862505 61862565 -40010604 + L1ME4a LINE L1 5808 5868 -253 2025 129 7 0 chr13 61862579 61862865 -40010304 - AluSx SINE Alu -24 288 1 2281 113 0 0 chr13 61862972 61863283 -40009886 - AluY SINE Alu 0 311 1 245 190 170 20 chr13 61863300 61863400 -40009769 + L1ME4a LINE L1 6007 6121 0 267 314 57 14 chr13 61863625 61863765 -40009404 + MIR3 SINE MIR 37 182 -26 27 29 0 0 chr13 61865135 61865169 -40008000 + AT_rich Low_complexity Low_complexity 1 34 0 451 213 134 0 chr13 61865232 61865359 -40007810 - MIR SINE MIR -13 249 106 205 425 19 0 chr13 61866166 61866272 -40006897 - L3b LINE CR1 -93 1490 1383 288 261 189 0 chr13 61867421 61867532 -40005637 + MIR SINE MIR 53 184 -78 2284 87 3 13 chr13 61867880 61868179 -40004990 + AluSq SINE Alu 1 296 -17 2273 104 0 0 chr13 61868180 61868479 -40004690 + AluSq SINE Alu 2 300 -13 21 0 0 0 chr13 61868781 61868802 -40004367 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 61870141 61870174 -40002995 + (A)n Simple_repeat Simple_repeat 1 33 0 553 249 34 28 chr13 61871779 61871956 -40001213 - MER5B DNA MER1_type 0 178 1 201 238 32 0 chr13 61872406 61872469 -40000700 + MER5A DNA MER1_type 48 112 -77 185 315 37 0 chr13 61872958 61873012 -40000157 + L2 LINE L2 3247 3302 -11 214 337 105 12 chr13 61873542 61873628 -39999541 - L2 LINE L2 -17 3296 3203 236 311 66 33 chr13 61873778 61873929 -39999240 - L2 LINE L2 -194 3078 2923 27 49 0 0 chr13 61874562 61874603 -39998566 + AT_rich Low_complexity Low_complexity 1 41 0 4638 96 32 13 chr13 61875241 61875949 -39997220 - L1P3 LINE L1 -5731 730 9 642 214 89 27 chr13 61875951 61876227 -39996942 - HsTC2 DNA Tc2 -261 1637 1169 2079 125 3 10 chr13 61876506 61876803 -39996366 - AluSx SINE Alu -17 295 1 1056 215 124 43 chr13 61876987 61877359 -39995810 + MER92B LTR ERV1 2 403 -233 436 213 0 0 chr13 61877378 61877472 -39995697 + MER92B LTR ERV1 543 636 0 25 0 0 0 chr13 61877654 61877679 -39995490 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 61878119 61878147 -39995022 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 61878311 61878341 -39994828 + AT_rich Low_complexity Low_complexity 1 30 0 800 105 0 32 chr13 61878741 61878865 -39994304 - AluSg/x SINE Alu -20 290 171 2211 58 65 3 chr13 61878974 61879265 -39993904 + AluY SINE Alu 3 311 0 295 120 267 0 chr13 61879972 61880047 -39993122 - L1M3 LINE L1 -516 5667 5573 185 100 0 0 chr13 61880191 61880221 -39992948 - L2 LINE L2 0 3313 3284 1204 261 83 19 chr13 61880276 61880709 -39992460 + LTR16B LTR ERVL 4 464 0 633 259 129 27 chr13 61881626 61881850 -39991319 - MIR SINE MIR -3 259 13 195 232 0 0 chr13 61883498 61883554 -39989615 + (CAT)n Simple_repeat Simple_repeat 1 56 0 350 313 67 33 chr13 61884017 61884167 -39989002 + MIR SINE MIR 20 174 -88 632 175 0 0 chr13 61884276 61884390 -39988779 + L1P4 LINE L1 5435 5548 -618 362 238 12 0 chr13 61884942 61885022 -39988147 + MER63 DNA MER1_type 680 760 -76 183 80 0 0 chr13 61885459 61885484 -39987685 + (A)n Simple_repeat Simple_repeat 1 25 0 2265 110 3 0 chr13 61886028 61886329 -39986840 + AluSx SINE Alu 1 302 -10 695 124 39 16 chr13 61886330 61886459 -39986710 + L1MA9 LINE L1 5778 5909 -403 2095 123 3 3 chr13 61886461 61886762 -39986407 + AluSc SINE Alu 1 301 -8 2594 106 16 49 chr13 61886765 61887218 -39985951 - MER51A LTR ERV1 0 634 197 25 31 0 0 chr13 61887911 61887943 -39985226 + AT_rich Low_complexity Low_complexity 1 32 0 1210 147 118 0 chr13 61888389 61888600 -39984569 + MER46A DNA MER2_type 1 236 0 239 231 165 74 chr13 61888665 61888786 -39984383 - MIR3 SINE MIR -71 137 6 1709 161 67 85 chr13 61889610 61890046 -39983123 + MSTA LTR MaLR 1 428 0 531 234 133 37 chr13 61890265 61890453 -39982716 - MIR SINE MIR -12 250 45 718 289 118 22 chr13 61890794 61891296 -39981873 + Charlie7 DNA MER1_type 12 561 -2051 1179 78 0 0 chr13 61891569 61891711 -39981458 - AluSc SINE Alu -18 291 150 209 176 0 0 chr13 61891868 61891902 -39981267 + MIR SINE MIR 95 128 -134 * 489 242 81 34 chr13 61891900 61892049 -39981120 - MIR SINE MIR -91 171 16 450 245 29 0 chr13 61892075 61892177 -39980992 + MIR SINE MIR 158 262 0 2242 100 0 3 chr13 61892620 61892920 -39980249 - AluSg SINE Alu -11 299 1 529 105 137 0 chr13 61893527 61893622 -39979547 + Tigger4(Zombi) DNA MER2_type 2624 2731 0 414 296 21 21 chr13 61893622 61893764 -39979405 - MIR SINE MIR -111 151 10 1880 158 20 7 chr13 61894634 61894932 -39978237 + AluSx SINE Alu 1 302 -10 348 239 0 45 chr13 61895738 61895826 -39977343 + MIR SINE MIR 56 139 -123 187 339 126 44 chr13 61896297 61896686 -39976483 - L2 LINE L2 -339 2975 2555 667 80 0 40 chr13 61896853 61896953 -39976216 + AluSg/x SINE Alu 198 293 -17 2153 99 0 3 chr13 61898082 61898376 -39974793 - AluSc SINE Alu -16 293 1 405 345 140 16 chr13 61898444 61898881 -39974288 + L2 LINE L2 666 1156 -2158 476 356 6 12 chr13 61899055 61899215 -39973954 + L2 LINE L2 3111 3269 -3 634 314 63 9 chr13 61899241 61899464 -39973705 - MIR SINE MIR -4 258 24 2000 81 11 3 chr13 61899526 61899809 -39973360 - L1PB1 LINE L1 0 6151 5867 21 0 0 0 chr13 61899851 61899872 -39973297 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 61900034 61900055 -39973114 + AT_rich Low_complexity Low_complexity 1 21 0 324 319 86 38 chr13 61900235 61900646 -39972523 - L1M4 LINE L1 -1219 4927 4488 695 207 50 7 chr13 61900745 61900885 -39972284 + AluJb SINE Alu 137 282 -30 26501 110 34 28 chr13 61901379 61906809 -39966360 + L1PA10 LINE L1 717 6168 0 512 176 92 142 chr13 61906813 61907074 -39966095 + HsTC2 DNA Tc2 1619 1866 -32 311 228 9 79 chr13 61907137 61907251 -39965918 + MLT1J1 LTR MaLR 16 121 -325 316 233 48 10 chr13 61907586 61907689 -39965480 + MLT1J2 LTR MaLR 344 450 0 2326 109 0 3 chr13 61908077 61908381 -39964788 + AluSx SINE Alu 3 305 -7 1699 91 15 11 chr13 61908725 61908988 -39964181 - L1MA1 LINE L1 0 6302 6039 43 0 0 0 chr13 61908997 61909040 -39964129 + AT_rich Low_complexity Low_complexity 1 43 0 370 244 37 0 chr13 61909265 61909347 -39963822 + MIR SINE MIR 13 97 -165 1894 165 46 19 chr13 61909395 61909807 -39963362 + MLT2C2 LTR ERVL 1 423 -41 207 183 49 24 chr13 61909808 61909890 -39963279 + (TA)n Simple_repeat Simple_repeat 2 85 0 236 228 0 0 chr13 61909910 61909967 -39963202 + MLT2C2 LTR ERVL 464 520 0 1299 146 5 9 chr13 61911050 61911269 -39961900 + MSTA LTR MaLR 211 428 0 750 246 19 5 chr13 61911269 61911480 -39961689 - L1MC/D LINE L1 -563 5796 5583 2303 105 3 3 chr13 61911482 61911787 -39961382 - AluSx SINE Alu -7 305 1 759 211 34 6 chr13 61911789 61911964 -39961205 - MER115 DNA AcHobo -62 631 452 180 0 0 0 chr13 61911968 61911988 -39961181 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 2127 72 4 18 chr13 61912061 61912338 -39960831 - AluSp SINE Alu -10 303 31 2335 82 0 16 chr13 61913292 61913595 -39959574 + AluSc SINE Alu 1 298 -11 1300 139 14 0 chr13 61913595 61913818 -39959351 - Tigger1 DNA MER2_type -2192 226 1 249 71 0 54 chr13 61913890 61913946 -39959223 + (TTC)n Simple_repeat Simple_repeat 2 54 0 300 75 0 0 chr13 61914123 61914163 -39959006 + MER31-int LTR ERV1 4170 4209 -727 268 210 136 12 chr13 61914182 61914263 -39958906 + LTR37A LTR ERV1 1 91 -335 890 186 16 78 chr13 61914274 61914516 -39958653 + MER31-int LTR ERV1 4340 4566 -370 1545 201 64 39 chr13 61914549 61915002 -39958167 + MER31B LTR ERV1 1 661 0 2291 83 0 49 chr13 61915736 61916060 -39957109 - AluSc SINE Alu -1 308 1 30 27 0 0 chr13 61916582 61916619 -39956550 + AT_rich Low_complexity Low_complexity 1 37 0 2211 101 31 0 chr13 61916718 61917006 -39956163 + AluSq SINE Alu 1 297 -16 22 35 0 0 chr13 61917774 61917803 -39955366 + AT_rich Low_complexity Low_complexity 1 29 0 272 320 109 34 chr13 61918060 61918207 -39954962 + L2 LINE L2 3115 3272 0 347 333 87 36 chr13 61918715 61919162 -39954007 - L1M4 LINE L1 -3103 3043 2574 1691 229 69 86 chr13 61919309 61920485 -39952684 + L1ME3A LINE L1 4927 6161 -9 28 0 0 0 chr13 61920526 61920554 -39952615 + AT_rich Low_complexity Low_complexity 1 28 0 206 254 0 30 chr13 61920721 61920788 -39952381 + T-rich Low_complexity Low_complexity 2 66 0 1861 148 0 0 chr13 61920969 61921252 -39951917 - AluSx SINE Alu -29 283 1 234 0 0 0 chr13 61921266 61921292 -39951877 + (T)n Simple_repeat Simple_repeat 1 26 0 2068 145 3 10 chr13 61921586 61921897 -39951272 - AluSg SINE Alu -1 309 1 760 201 121 69 chr13 61922044 61922520 -39950649 - MLT1H LTR MaLR -4 545 5 2279 107 3 0 chr13 61924083 61924381 -39948788 + AluSp SINE Alu 1 299 -14 246 328 0 0 chr13 61924455 61924522 -39948647 - L2 LINE L2 0 3272 3206 2578 40 0 3 chr13 61924877 61925174 -39947995 - AluY SINE Alu -15 296 1 256 340 65 52 chr13 61925813 61926104 -39947065 + L2 LINE L2 2540 2834 -480 185 83 28 0 chr13 61926108 61926144 -39947025 + (GTTTG)n Simple_repeat Simple_repeat 3 39 0 318 272 176 60 chr13 61926277 61926527 -39946642 + L2 LINE L2 2994 3272 0 476 243 21 100 chr13 61927419 61927658 -39945511 + L1MC4a LINE L1 5679 5898 -1910 21 0 0 0 chr13 61933775 61933796 -39939373 + GC_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr13 61933919 61933978 -39939191 + GC_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr13 61934298 61934320 -39938849 + GC_rich Low_complexity Low_complexity 1 22 0 339 85 0 0 chr13 61934465 61934512 -39938657 + (CCG)n Simple_repeat Simple_repeat 2 48 0 1316 260 141 21 chr13 61936505 61937200 -39935969 + L2 LINE L2 2501 3302 -11 860 251 130 23 chr13 61937210 61937564 -39935605 - L2 LINE L2 -7 3306 2915 3944 172 43 28 chr13 61938286 61939008 -39934161 + MER44D DNA MER2_type 1 605 0 1073 114 0 0 chr13 61939546 61939695 -39933474 + AluSg/x SINE Alu 162 310 -2 1101 205 51 0 chr13 61939852 61940086 -39933083 - MIR SINE MIR -4 258 13 422 202 11 0 chr13 61940128 61940217 -39932952 - MIR SINE MIR -94 168 79 1518 142 9 0 chr13 61940369 61940588 -39932581 - L1PA15 LINE L1 -1 6164 5944 212 330 90 37 chr13 61941096 61941285 -39931884 - MIR SINE MIR -43 219 20 417 264 40 27 chr13 61941287 61941435 -39931734 - MARNA DNA Mariner -41 545 396 * 521 261 76 0 chr13 61941312 61941469 -39931700 + MARNA DNA Mariner 64 232 -354 385 283 91 32 chr13 61941996 61942215 -39930954 + MIR SINE MIR 1 232 -30 228 245 38 0 chr13 61942947 61943000 -39930169 - L2 LINE L2 -14 3258 3204 847 348 112 9 chr13 61943168 61943729 -39929440 + L3 LINE CR1 345 963 -614 224 313 30 0 chr13 61943767 61943834 -39929335 - MIR3 SINE MIR -21 187 119 227 364 16 47 chr13 61943863 61943992 -39929177 + L3 LINE CR1 1053 1177 -400 2063 179 52 0 chr13 61944060 61944407 -39928762 - MLT1A1 LTR MaLR 0 365 1 9707 137 22 8 chr13 61944407 61945283 -39927886 - Tigger2 DNA MER2_type -1049 1669 762 195 42 0 0 chr13 61945283 61945307 -39927862 + (TCTCC)n Simple_repeat Simple_repeat 2 25 0 9707 137 22 8 chr13 61945307 61945953 -39927216 - Tigger2 DNA MER2_type -1956 762 126 11109 103 8 2 chr13 61945966 61947456 -39925713 - THE1B-int LTR MaLR -81 1499 1 2415 127 28 25 chr13 61947456 61947819 -39925350 - THE1B LTR MaLR 0 364 1 196 283 33 17 chr13 61947874 61947934 -39925235 + L3 LINE CR1 1495 1555 -22 1323 183 29 4 chr13 61948460 61948706 -39924463 + L1MC2 LINE L1 6079 6330 -14 363 280 11 11 chr13 61949124 61949217 -39923952 - L2 LINE L2 -18 3254 3162 319 250 358 0 chr13 61949726 61949902 -39923267 - L2 LINE L2 -2096 1218 980 232 250 69 0 chr13 61950537 61950609 -39922560 - MLT1J LTR MaLR -311 200 124 202 222 25 37 chr13 61950966 61951047 -39922122 + (TGAA)n Simple_repeat Simple_repeat 4 83 0 460 281 0 22 chr13 61953448 61953583 -39919586 - MLT1J LTR MaLR 0 511 380 1990 189 147 73 chr13 61953597 61954170 -39918999 - MLT1E1 LTR MaLR 0 654 40 332 227 56 143 chr13 61954184 61954400 -39918769 - MLT1J LTR MaLR -132 379 183 603 230 7 7 chr13 61954419 61954554 -39918615 + MER97a DNA MER1_type? 38 172 -722 28 48 0 0 chr13 61955376 61955418 -39917751 + AT_rich Low_complexity Low_complexity 1 42 0 2596 43 0 3 chr13 61956306 61956610 -39916559 + AluY SINE Alu 1 303 -8 252 0 0 0 chr13 61956748 61956776 -39916393 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 306 0 0 0 chr13 61956775 61956809 -39916360 + (CA)n Simple_repeat Simple_repeat 1 34 0 731 174 26 0 chr13 61957128 61957243 -39915926 + FLAM_C SINE Alu 1 118 -15 450 337 134 14 chr13 61957285 61957650 -39915519 + L2 LINE L2 1732 2140 -1174 388 182 0 0 chr13 61957669 61957735 -39915434 + MER5A DNA MER1_type 4 69 -120 762 111 20 131 chr13 61957742 61957812 -39915357 - MER53 DNA DNA -13 176 100 1988 130 3 23 chr13 61957812 61958112 -39915057 + AluJb SINE Alu 1 294 -18 762 111 20 131 chr13 61958112 61958239 -39914930 - MER53 DNA DNA -89 100 1 458 276 43 0 chr13 61958240 61958356 -39914813 + MER5A DNA MER1_type 63 183 -6 302 261 160 25 chr13 61959257 61959548 -39913621 - MLT1J2 LTR MaLR 0 450 68 423 171 0 0 chr13 61959569 61959639 -39913530 - MLT1A2 LTR MaLR 0 374 305 * 534 184 0 19 chr13 61959633 61959736 -39913433 - MLT1A2 LTR MaLR -273 101 1 570 285 127 7 chr13 61959813 61959928 -39913241 + L2 LINE L2 2215 2315 -999 695 142 8 50 chr13 61959928 61960048 -39913121 - L1PA16 LINE L1 -1 6165 6051 570 285 127 7 chr13 61960048 61960216 -39912953 + L2 LINE L2 2315 2532 -782 778 220 105 25 chr13 61960254 61960454 -39912715 - MER20 DNA MER1_type -3 216 1 2275 131 0 0 chr13 61960525 61960837 -39912332 - AluSx SINE Alu 0 312 1 222 361 68 0 chr13 61961244 61961377 -39911792 + L2 LINE L2 3170 3311 -2 2055 145 0 7 chr13 61961542 61961852 -39911317 + AluSx SINE Alu 1 308 -4 220 238 143 0 chr13 61961912 61961975 -39911194 - L2 LINE L2 -1 3312 3241 298 289 16 70 chr13 61962633 61962761 -39910408 + L2 LINE L2 2948 3068 -204 210 338 25 25 chr13 61962854 61962934 -39910235 - L2 LINE L2 0 3272 3193 1614 108 59 0 chr13 61962948 61963204 -39909965 + L1PBa LINE L1 2143 2287 -936 575 362 91 17 chr13 61963237 61963720 -39909449 - L2 LINE L2 -811 2503 1985 479 292 191 10 chr13 61963731 61963940 -39909229 + MIR SINE MIR 16 262 0 246 326 14 83 chr13 61963948 61963996 -39909173 + L2 LINE L2 3134 3184 -88 1709 185 7 17 chr13 61963996 61964288 -39908881 - AluJo SINE Alu -23 289 1 246 326 14 83 chr13 61964288 61964383 -39908786 + L2 LINE L2 3184 3267 -5 613 304 144 0 chr13 61964540 61964839 -39908330 - L3 LINE CR1 -7 1570 1229 5035 114 14 1 chr13 61964839 61965561 -39907608 + Tigger1 DNA MER2_type 995 1725 -693 8989 131 50 6 chr13 61965569 61968062 -39905107 + L1PB1 LINE L1 124 2929 -3934 5924 115 29 4 chr13 61968050 61969017 -39904152 + L1PB1 LINE L1 5874 6859 -8 * 4520 134 14 21 chr13 61969033 61969626 -39903543 + Tigger1 DNA MER2_type 1712 2301 -117 1778 181 3 10 chr13 61969626 61969924 -39903245 - AluSx SINE Alu -16 296 1 4520 134 14 21 chr13 61969924 61970041 -39903128 + Tigger1 DNA MER2_type 2301 2417 -1 652 140 38 20 chr13 61970086 61970218 -39902951 - MLT1A2 LTR MaLR 0 390 243 206 287 43 53 chr13 61970315 61970409 -39902760 + L3 LINE CR1 1105 1197 -380 385 293 14 57 chr13 61970525 61970665 -39902504 - L3 LINE CR1 -784 793 660 225 345 92 0 chr13 61970690 61970777 -39902392 + MIR3 SINE MIR 77 171 -37 218 296 20 91 chr13 61972044 61972243 -39900926 - L3 LINE CR1 -1094 483 299 437 337 6 18 chr13 61973246 61973412 -39899757 + L2 LINE L2 3107 3270 -43 406 214 26 68 chr13 61973414 61973531 -39899638 - MLT1I LTR MaLR -16 393 282 450 288 91 58 chr13 61974252 61974561 -39898608 + L1MEd LINE L1 52 370 -5749 847 169 64 12 chr13 61974572 61974744 -39898425 + MER53 DNA DNA 4 184 -5 369 257 18 134 chr13 61974756 61974927 -39898242 + L1MEd LINE L1 375 525 -5594 2656 84 0 27 chr13 61975297 61975667 -39897502 + L1PA8 LINE L1 5812 6171 -1 1248 118 98 10 chr13 61975952 61976155 -39897014 - Tigger2 DNA MER2_type -10 2708 2488 2113 113 30 10 chr13 61976374 61976676 -39896493 - Tigger2 DNA MER2_type -1104 1614 1307 204 97 0 0 chr13 61977301 61977332 -39895837 + (TG)n Simple_repeat Simple_repeat 2 32 0 280 139 0 56 chr13 61977336 61977408 -39895761 + (CATATA)n Simple_repeat Simple_repeat 6 73 0 1726 125 9 59 chr13 61977408 61977592 -39895577 - Tigger2 DNA MER2_type -248 2470 2307 2322 132 28 8 chr13 61977592 61977949 -39895220 - THE1B LTR MaLR 0 364 1 1726 125 9 59 chr13 61977949 61978085 -39895084 - Tigger2 DNA MER2_type -411 2307 2166 263 270 35 69 chr13 61978393 61978567 -39894602 + LTR31 LTR ERV1 443 610 -9 11078 137 8 18 chr13 61978579 61979922 -39893247 - Tigger2 DNA MER2_type -519 2199 877 2321 40 3 14 chr13 61979922 61980218 -39892951 + L1PA8 LINE L1 5880 6172 0 11078 137 8 18 chr13 61980218 61980614 -39892555 - Tigger2 DNA MER2_type -1841 877 478 2053 133 35 22 chr13 61980606 61980975 -39892194 - Tigger2 DNA MER2_type -2344 374 1 * 370 274 45 45 chr13 61981129 61981286 -39891883 + MIR SINE MIR 106 262 0 2386 95 0 19 chr13 61981659 61981975 -39891194 + AluSg SINE Alu 1 310 0 465 215 165 57 chr13 61982427 61982585 -39890584 - MER5A DNA MER1_type -2 187 13 798 211 16 11 chr13 61982607 61982792 -39890377 + MER5A DNA MER1_type 4 189 0 651 232 109 19 chr13 61983303 61983514 -39889655 + MIR SINE MIR 31 260 -2 683 183 49 12 chr13 61983877 61984041 -39889128 - MER5B DNA MER1_type 0 178 9 2133 147 0 10 chr13 61984161 61984474 -39888695 - AluSx SINE Alu -2 310 1 216 364 0 0 chr13 61984522 61984588 -39888581 - MER91 DNA MER1_type -4 186 121 648 140 0 0 chr13 61984588 61984688 -39888481 - LTR40b LTR ERVL 0 462 363 2240 123 17 6 chr13 61985322 61985785 -39887384 + MLT2B1 LTR ERVL 1 515 0 2077 152 59 34 chr13 61986750 61987158 -39886011 + MER67C LTR ERV1 293 710 0 184 146 21 21 chr13 61988358 61988406 -39884763 + CT-rich Low_complexity Low_complexity 2 49 0 2561 180 132 12 chr13 61988451 61988791 -39884378 - MER39 LTR ERV1 -17 690 392 2043 140 7 0 chr13 61988791 61989083 -39884086 - AluJb SINE Alu -18 294 1 2561 180 132 12 chr13 61989083 61989321 -39883848 - MER39 LTR ERV1 -315 392 1 1814 115 0 109 chr13 61989443 61989790 -39883379 + AluSx SINE Alu 1 309 -3 832 187 29 0 chr13 61990004 61990143 -39883026 + FRAM SINE Alu 13 155 -21 1565 108 9 17 chr13 61992262 61992494 -39880675 + AluSg/x SINE Alu 81 310 0 267 103 0 0 chr13 61992498 61992537 -39880632 + (GAGAA)n Simple_repeat Simple_repeat 2 40 0 2085 137 3 0 chr13 61993177 61993470 -39879699 + AluSx SINE Alu 1 294 -18 334 227 62 10 chr13 61993551 61993648 -39879521 - L2 LINE L2 0 3272 3171 816 137 0 38 chr13 61993767 61993797 -39879372 - FLAM_C SINE Alu -173 139 109 4960 92 1 9 chr13 61993797 61994462 -39878707 - PABL_A LTR ERV1 0 660 1 816 137 0 38 chr13 61994462 61994562 -39878607 - FLAM_C SINE Alu -203 109 14 1018 144 104 20 chr13 61994610 61994811 -39878358 - MER20 DNA MER1_type 0 219 2 1003 167 75 40 chr13 61995072 61995299 -39877870 + MLT2D LTR ERVL 1 235 -179 1977 149 9 22 chr13 61995958 61996274 -39876895 - AluJo SINE Alu 0 312 1 273 289 12 0 chr13 61996345 61996428 -39876741 - L1ME LINE L1 -437 5684 5601 200 295 57 41 chr13 61997064 61997186 -39875983 + L2 LINE L2 3163 3286 -27 2296 78 3 7 chr13 61997190 61997484 -39875685 + AluY SINE Alu 1 293 -18 210 373 16 0 chr13 61998753 61998879 -39874290 + L2 LINE L2 2305 2432 -882 288 285 76 14 chr13 61998886 61999030 -39874139 + L2 LINE L2 2606 2758 -556 782 168 54 130 chr13 61999311 61999445 -39873724 - MER33 DNA MER1_type -2287 298 155 2065 138 0 14 chr13 61999445 61999742 -39873427 - AluSx SINE Alu -19 293 1 782 168 54 130 chr13 61999742 61999922 -39873247 - MER33 DNA MER1_type -2430 155 8 183 281 69 39 chr13 61999995 62000111 -39873058 - MER5B DNA MER1_type -66 112 8 378 311 132 5 chr13 62000116 62000306 -39872863 + MIR SINE MIR 15 228 -34 1630 203 0 25 chr13 62001062 62001377 -39871792 + AluJb SINE Alu 6 312 0 302 330 46 9 chr13 62001924 62002033 -39871136 - MIR3 SINE MIR -2 206 94 189 107 0 0 chr13 62002261 62002289 -39870880 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 310 132 0 0 chr13 62002721 62002774 -39870395 + L1MC4 LINE L1 7990 8042 0 2420 103 0 0 chr13 62003053 62003363 -39869806 + AluSg SINE Alu 1 310 0 708 243 61 53 chr13 62004312 62004411 -39868758 - MIR SINE MIR -12 250 153 2414 88 0 0 chr13 62004411 62004706 -39868463 - AluSc SINE Alu -14 295 1 192 40 0 0 chr13 62004706 62004731 -39868438 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1901 153 7 0 chr13 62004732 62005019 -39868150 - AluSx SINE Alu -23 289 1 708 243 61 53 chr13 62005019 62005163 -39868006 - MIR SINE MIR -108 154 2 359 182 57 23 chr13 62006646 62006734 -39866435 + MIR SINE MIR 49 139 -123 180 279 0 0 chr13 62006763 62006806 -39866363 - MIR SINE MIR -215 47 5 2188 136 15 51 chr13 62007038 62007427 -39865742 - THE1C LTR MaLR 0 375 1 10554 107 17 32 chr13 62007427 62009031 -39864138 - THE1C-int LTR MaLR 0 1580 1 2357 135 8 13 chr13 62009031 62009408 -39863761 - THE1C LTR MaLR 0 375 1 225 247 69 46 chr13 62009485 62009511 -39863658 + L1MDa LINE L1 2404 2428 -4112 1578 195 17 20 chr13 62009511 62009803 -39863366 + AluJb SINE Alu 1 291 -21 225 247 69 46 chr13 62009803 62009950 -39863219 + L1MDa LINE L1 2428 2581 -3959 3177 226 45 4 chr13 62009983 62010760 -39862409 - L1ME1 LINE L1 -5 6161 5351 617 134 0 0 chr13 62010782 62010879 -39862290 - L1ME1 LINE L1 -861 5285 5189 576 268 172 27 chr13 62010926 62011483 -39861686 + L1MDa LINE L1 2604 3241 -3299 803 199 0 33 chr13 62011483 62011630 -39861539 + FRAM SINE Alu 1 142 -170 6670 19 1 0 chr13 62011630 62012381 -39860788 + L1PA2 LINE L1 5404 6155 0 803 199 0 33 chr13 62012381 62012414 -39860755 + FRAM SINE Alu 142 175 -1 23 0 0 0 chr13 62012464 62012487 -39860682 + AT_rich Low_complexity Low_complexity 1 23 0 317 257 30 0 chr13 62012490 62012591 -39860578 + L1MDa LINE L1 3288 3391 -3149 1366 178 0 29 chr13 62013078 62013094 -39860075 - AluJb SINE Alu -2 310 295 2373 96 0 10 chr13 62013094 62013407 -39859762 - AluSx SINE Alu -2 310 1 1366 178 0 29 chr13 62013407 62013632 -39859537 - AluJb SINE Alu -17 295 76 1572 269 78 19 chr13 62014126 62014654 -39858515 - MER68 LTR ERV1 0 562 4 7330 176 27 29 chr13 62014842 62016910 -39856259 - L1P3 LINE L1 -4341 2120 32 562 148 45 0 chr13 62016910 62016998 -39856171 - THE1B LTR MaLR -80 284 193 3223 64 19 7 chr13 62016998 62017421 -39855748 - L1PA13 LINE L1 -336 5827 5400 21 0 0 0 chr13 62017471 62017492 -39855677 + AT_rich Low_complexity Low_complexity 1 21 0 499 231 12 56 chr13 62017632 62017792 -39855377 - L2 LINE L2 -1 3312 3160 1675 179 3 7 chr13 62018428 62018718 -39854451 + AluJo SINE Alu 1 289 -23 2321 107 3 0 chr13 62018767 62019077 -39854092 + AluSp SINE Alu 1 311 -2 951 214 0 0 chr13 62019576 62019744 -39853425 + FAM SINE Alu 1 168 -7 1744 129 4 40 chr13 62020349 62020621 -39852548 + AluJb SINE Alu 31 292 -20 2172 90 39 0 chr13 62021157 62021436 -39851733 + AluSg SINE Alu 1 290 -20 545 248 98 75 chr13 62022050 62022219 -39850950 + MLT1G LTR MaLR 5 169 -373 1203 163 123 78 chr13 62022219 62022576 -39850593 + MER93b LTR ERV1 1 373 0 545 248 98 75 chr13 62022576 62022860 -39850309 + MLT1G LTR MaLR 169 432 -110 946 191 114 22 chr13 62022863 62023243 -39849926 + LTR49 LTR ERV1 131 594 -1 2373 104 0 3 chr13 62023630 62023938 -39849231 - AluSx SINE Alu -5 307 1 227 226 32 32 chr13 62024191 62024253 -39848916 + MER5A DNA MER1_type 128 189 0 737 213 85 0 chr13 62024261 62024425 -39848744 + MER5B DNA MER1_type 1 178 0 527 224 49 14 chr13 62024447 62024590 -39848579 - MER5B DNA MER1_type -28 150 3 22 35 0 0 chr13 62025160 62025189 -39847980 + AT_rich Low_complexity Low_complexity 1 29 0 370 194 169 62 chr13 62025277 62025437 -39847732 + MER5B DNA MER1_type 1 177 -1 450 0 0 0 chr13 62026035 62026085 -39847084 + (TA)n Simple_repeat Simple_repeat 2 51 0 1661 182 3 20 chr13 62026138 62026434 -39846735 + AluJo SINE Alu 1 291 -21 211 299 0 0 chr13 62026678 62026745 -39846424 + L2 LINE L2 3247 3313 0 227 320 27 0 chr13 62026822 62026897 -39846272 + MIR SINE MIR 42 118 -90 3147 156 47 19 chr13 62027008 62027586 -39845583 + L1MB3 LINE L1 5576 6169 -14 1983 108 0 35 chr13 62027782 62028097 -39845072 + AluSq SINE Alu 1 304 -9 1258 68 0 0 chr13 62028109 62028290 -39844879 + L1PA8 LINE L1 6007 6187 0 400 292 62 14 chr13 62030576 62030720 -39842449 + MIR SINE MIR 38 188 -74 2190 178 74 7 chr13 62030819 62030833 -39842336 - LTR54B LTR ERV1 -6 492 480 1964 117 64 0 chr13 62030833 62031115 -39842054 + AluSx SINE Alu 1 300 -12 2190 178 74 7 chr13 62031115 62031561 -39841608 - LTR54B LTR ERV1 -18 480 1 29 0 0 0 chr13 62031816 62031845 -39841324 + AT_rich Low_complexity Low_complexity 1 29 0 1662 166 41 14 chr13 62031878 62032173 -39840996 + AluJb SINE Alu 1 303 -9 1602 170 17 14 chr13 62032386 62032680 -39840489 + AluJo SINE Alu 1 295 -17 341 180 124 22 chr13 62032708 62032797 -39840372 - Charlie4 DNA MER1_type -28 1933 1836 404 239 111 0 chr13 62032814 62032931 -39840238 + LTR65 LTR ERV1 13 142 -527 909 180 113 0 chr13 62037186 62037336 -39835833 - FAM SINE Alu -8 167 1 1735 140 34 101 chr13 62037339 62037753 -39835416 + LTR65 LTR ERV1 152 537 -132 216 298 80 91 chr13 62037932 62038035 -39835134 + L3 LINE CR1 1270 1373 -204 1904 107 40 24 chr13 62038035 62038333 -39834836 + AluSx SINE Alu 1 303 -9 216 298 80 91 chr13 62038333 62038504 -39834665 + L3 LINE CR1 1373 1541 -36 23 0 0 0 chr13 62040128 62040151 -39833018 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 62040343 62040364 -39832805 + GC_rich Low_complexity Low_complexity 1 21 0 251 172 35 92 chr13 62040946 62041033 -39832136 - MER81 DNA DNA -29 85 4 484 245 49 28 chr13 62041362 62041505 -39831664 + MIR SINE MIR 44 189 -73 201 286 71 88 chr13 62042607 62042845 -39830324 + L2 LINE L2 3077 3310 -3 5898 83 38 48 chr13 62044510 62045344 -39827825 - L1PB1 LINE L1 0 6151 5325 2132 133 3 0 chr13 62045344 62045652 -39827517 - AluSq SINE Alu -4 309 1 5898 83 38 48 chr13 62045652 62045872 -39827297 - L1PB1 LINE L1 -826 5325 5104 778 208 132 5 chr13 62046162 62046359 -39826810 - MIR SINE MIR -39 223 2 197 246 76 15 chr13 62046535 62046609 -39826560 + MIR SINE MIR 75 151 -62 332 248 18 80 chr13 62046840 62046953 -39826216 - MIR SINE MIR -63 145 40 1583 159 6 80 chr13 62048284 62048610 -39824559 + AluJo SINE Alu 1 302 -10 283 316 105 18 chr13 62050364 62050535 -39822634 - MIR SINE MIR -37 225 40 643 228 153 10 chr13 62050575 62050777 -39822392 + MER5C DNA MER1_type 11 241 -83 1842 135 0 34 chr13 62051231 62051527 -39821642 + AluSx SINE Alu 6 291 -21 2163 106 3 14 chr13 62051867 62052159 -39821010 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 62053234 62053259 -39819910 + AT_rich Low_complexity Low_complexity 1 25 0 2054 128 7 0 chr13 62056769 62057059 -39816110 - AluSx SINE Alu -20 292 1 236 293 0 40 chr13 62057280 62057355 -39815814 - MIR SINE MIR -178 84 13 1191 137 0 0 chr13 62057538 62057713 -39815456 - AluSg/x SINE Alu -16 296 122 6059 57 3 3 chr13 62057760 62058474 -39814695 + L1PA7 LINE L1 5441 6154 0 260 160 20 20 chr13 62058554 62058604 -39814565 + MLT1E1 LTR MaLR 1 50 -604 * 1933 231 91 31 chr13 62058572 62059121 -39814048 + MLT1E2 LTR MaLR 10 591 -35 1655 123 174 65 chr13 62059208 62059264 -39813905 + L1MB8 LINE L1 5277 5326 -852 2330 92 0 10 chr13 62059264 62059569 -39813600 + AluSq SINE Alu 1 302 -11 1655 123 174 65 chr13 62059569 62059646 -39813523 + L1MB8 LINE L1 5326 5393 -785 2065 139 0 3 chr13 62059646 62059947 -39813222 + AluJb SINE Alu 1 300 -12 1655 123 174 65 chr13 62059947 62060225 -39812944 + L1MB8 LINE L1 5393 5734 -444 1254 187 56 4 chr13 62060226 62060477 -39812692 + L1MB8 LINE L1 5915 6178 0 293 252 139 9 chr13 62060488 62060603 -39812566 + L1ME LINE L1 5536 5665 -456 2367 81 0 3 chr13 62060985 62061280 -39811889 - AluSc SINE Alu -15 294 1 3174 168 41 65 chr13 62061341 62062044 -39811125 + LTR8 LTR ERV1 1 686 -5 27 29 0 0 chr13 62063796 62063830 -39809339 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 62064208 62064229 -39808940 + AT_rich Low_complexity Low_complexity 1 21 0 236 127 0 91 chr13 62064427 62064482 -39808687 - L1MC4 LINE L1 -1339 6703 6654 1499 190 28 7 chr13 62064747 62065037 -39808132 - AluJo SINE Alu -16 296 1 25 65 0 0 chr13 62066624 62066670 -39806499 + AT_rich Low_complexity Low_complexity 1 46 0 893 141 47 29 chr13 62067749 62067919 -39805250 + MER5A DNA MER1_type 16 188 -1 617 239 50 6 chr13 62068362 62068542 -39804627 - MER53 DNA DNA 0 189 2 882 145 0 35 chr13 62068937 62069082 -39804087 - FRAM SINE Alu -16 160 21 1288 136 61 31 chr13 62070550 62070778 -39802391 + MER1B DNA MER1_type 37 271 -68 601 273 0 8 chr13 62071018 62071146 -39802023 + MIR SINE MIR 2 128 -134 313 73 0 36 chr13 62071330 62071385 -39801784 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 892 138 69 7 chr13 62071385 62071530 -39801639 - AluJb SINE Alu -31 281 128 252 0 0 0 chr13 62071552 62071580 -39801589 + (TG)n Simple_repeat Simple_repeat 2 29 0 1699 112 131 0 chr13 62073651 62073919 -39799250 + AluJb SINE Alu 5 307 -5 24 0 0 0 chr13 62074867 62074891 -39798278 + GC_rich Low_complexity Low_complexity 1 24 0 206 143 20 0 chr13 62074914 62074963 -39798206 + (CCCCG)n Simple_repeat Simple_repeat 4 53 0 23 33 0 0 chr13 62075431 62075461 -39797708 + GC_rich Low_complexity Low_complexity 1 30 0 1268 185 46 82 chr13 62076371 62076674 -39796495 + AluJo SINE Alu 1 292 -10 726 230 22 17 chr13 62077297 62077475 -39795694 - MER97b DNA MER1_type? -874 179 1 1772 183 59 35 chr13 62077527 62077932 -39795237 - L1MC3 LINE L1 -315 7470 7056 353 205 171 71 chr13 62077936 62078146 -39795023 - L1MDa LINE L1 -5058 1061 816 455 235 84 0 chr13 62078159 62078278 -39794891 - L1MDa LINE L1 -5339 780 652 1894 156 10 22 chr13 62078489 62078803 -39794366 + AluJb SINE Alu 1 310 -2 1565 121 31 87 chr13 62078877 62079166 -39794003 + AluJb SINE Alu 30 302 -10 335 234 32 89 chr13 62079861 62080019 -39793150 + MLT1G3-int LTR MaLR 1023 1171 -200 810 244 63 79 chr13 62080035 62080503 -39792666 + MLT1G3 LTR MaLR 42 593 -2 709 350 62 10 chr13 62080510 62080927 -39792242 + L1 LINE L1 3125 3563 -2583 626 190 29 36 chr13 62080952 62081089 -39792080 - FLAM_A SINE Alu 0 142 7 411 316 64 11 chr13 62081106 62081262 -39791907 + L1 LINE L1 3582 3751 -2395 2099 138 40 3 chr13 62081262 62081609 -39791560 + MER46B DNA MER2_type 1 235 -1 411 316 64 11 chr13 62081609 62081639 -39791530 + L1 LINE L1 3751 3778 -2368 193 301 44 82 chr13 62081679 62081812 -39791357 + L2 LINE L2 3090 3216 -97 2207 126 0 0 chr13 62081812 62082122 -39791047 + AluSx SINE Alu 1 310 -2 193 301 44 82 chr13 62082122 62082171 -39790998 + L2 LINE L2 3216 3265 -48 398 117 0 0 chr13 62083106 62083166 -39790003 + MER51A LTR ERV1 15 74 -560 381 259 72 41 chr13 62083482 62083608 -39789561 + MIR SINE MIR 6 149 -63 845 203 0 0 chr13 62083615 62083773 -39789396 + FRAM SINE Alu 7 164 -12 383 311 8 0 chr13 62083775 62083894 -39789275 + MIR SINE MIR 138 257 -5 4519 98 22 3 chr13 62083909 62084531 -39788638 - MER51A LTR ERV1 0 634 1 312 332 21 83 chr13 62084914 62085155 -39788014 - L3 LINE CR1 -83 1494 1269 1603 141 176 38 chr13 62085411 62085781 -39787388 + MSTA LTR MaLR 8 428 0 2313 99 0 3 chr13 62086630 62086933 -39786236 - AluSq SINE Alu -11 302 1 979 208 40 16 chr13 62086933 62087183 -39785986 - L1ME3 LINE L1 -10 6152 5897 180 321 0 0 chr13 62087293 62087349 -39785820 + L2 LINE L2 2579 2634 -680 704 152 109 5 chr13 62087498 62087682 -39785487 - Charlie5 DNA MER1_type 0 2624 2422 211 240 116 39 chr13 62087683 62087773 -39785396 + MIR SINE MIR 114 218 -44 2009 186 59 42 chr13 62087773 62088268 -39784901 - MLT1D LTR MaLR 0 505 3 211 240 116 39 chr13 62088268 62088306 -39784863 + MIR SINE MIR 218 252 -10 975 276 44 6 chr13 62088990 62089353 -39783816 - LTR16B LTR ERVL 0 464 88 855 156 92 23 chr13 62089500 62089673 -39783496 + MER46A DNA MER2_type 38 222 -14 186 260 149 94 chr13 62089722 62089903 -39783266 + MIR SINE MIR 1 191 -71 248 373 18 9 chr13 62090044 62090154 -39783015 - MIR SINE MIR -81 127 17 1738 145 67 20 chr13 62090367 62090664 -39782505 + AluSx SINE Alu 1 311 -1 1965 112 37 3 chr13 62091838 62092132 -39781037 + AluSx SINE Alu 1 304 -8 1898 141 13 13 chr13 62092284 62092583 -39780586 + AluJo SINE Alu 1 299 -13 21 0 0 0 chr13 62092664 62092685 -39780484 + AT_rich Low_complexity Low_complexity 1 21 0 225 206 55 14 chr13 62093837 62093910 -39779259 - L1ME4a LINE L1 0 6121 6046 23 33 0 0 chr13 62094374 62094404 -39778765 + AT_rich Low_complexity Low_complexity 1 30 0 206 225 169 14 chr13 62094732 62094803 -39778366 + MIR SINE MIR 181 262 0 349 326 54 16 chr13 62095234 62095363 -39777806 - L2 LINE L2 -2 3270 3137 329 229 174 0 chr13 62095394 62095503 -39777666 - MIR SINE MIR -19 243 116 293 247 94 0 chr13 62095503 62095588 -39777581 + MIR SINE MIR 97 189 -73 1301 117 98 1 chr13 62095700 62096007 -39777162 + LTR25 LTR ERV1 1 367 -427 * 1785 129 3 3 chr13 62096004 62096291 -39776878 + LTR25 LTR ERV1 508 794 0 1323 182 61 17 chr13 62096314 62096610 -39776559 + MLT1A1 LTR MaLR 56 364 -1 319 259 153 26 chr13 62096754 62096933 -39776236 + MIR SINE MIR 7 217 -45 304 348 69 42 chr13 62097030 62097407 -39775762 + L2 LINE L2 232 618 -2696 724 309 94 24 chr13 62097715 62097856 -39775313 - L1MC4a LINE L1 -1779 6029 5899 1996 126 25 0 chr13 62097856 62098142 -39775027 - AluSx SINE Alu -19 293 1 724 309 94 24 chr13 62098142 62098511 -39774658 - L1MC4a LINE L1 -1909 5899 5483 271 235 0 15 chr13 62099059 62099127 -39774042 + MLT1K LTR MaLR 500 566 -22 21 0 0 0 chr13 62099823 62099844 -39773325 + AT_rich Low_complexity Low_complexity 1 21 0 221 160 0 20 chr13 62100335 62100385 -39772784 + CT-rich Low_complexity Low_complexity 4 52 0 1750 174 3 0 chr13 62100416 62100704 -39772465 - AluJo SINE Alu -23 289 1 1853 151 3 33 chr13 62101053 62101358 -39771811 + AluJb SINE Alu 1 296 -16 270 297 94 16 chr13 62102039 62102167 -39771002 - L2 LINE L2 0 3313 3176 1969 158 0 0 chr13 62102810 62103107 -39770062 - AluJb SINE Alu -15 297 1 419 304 148 21 chr13 62103129 62103468 -39769701 - L2 LINE L2 -967 2347 1966 212 213 64 0 chr13 62104020 62104067 -39769102 - L2 LINE L2 -8 3264 3215 540 0 0 0 chr13 62104306 62104366 -39768803 + (TG)n Simple_repeat Simple_repeat 2 61 0 2378 72 3 10 chr13 62106041 62106346 -39766823 - AluY SINE Alu -8 303 1 2441 86 0 0 chr13 62106911 62107213 -39765956 + AluSg SINE Alu 1 302 -8 388 284 91 51 chr13 62108403 62108600 -39764569 + L1M4 LINE L1 3691 3895 -2251 215 293 0 0 chr13 62108954 62109012 -39764157 - MIR3 SINE MIR -2 206 149 478 244 139 9 chr13 62109099 62109214 -39763955 - MIR SINE MIR -58 150 21 23 33 0 0 chr13 62109567 62109597 -39763572 + AT_rich Low_complexity Low_complexity 1 30 0 250 343 82 15 chr13 62109663 62109797 -39763372 - MIR SINE MIR -116 146 4 2123 121 10 10 chr13 62111482 62111788 -39761381 + AluSq SINE Alu 1 306 -7 204 40 0 0 chr13 62112792 62112817 -39760352 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 30 0 0 0 chr13 62113141 62113171 -39759998 + AT_rich Low_complexity Low_complexity 1 30 0 343 274 280 16 chr13 62114758 62115072 -39758097 - L1MC/D LINE L1 -2072 5736 5340 490 330 54 21 chr13 62115072 62115408 -39757761 - L1MC/D LINE L1 -770 5376 5030 280 234 56 28 chr13 62115509 62115616 -39757553 - L1MC/D LINE L1 -1156 4990 4881 919 210 0 0 chr13 62116133 62116295 -39756874 - FRAM SINE Alu -1 165 4 1193 131 101 5 chr13 62117547 62117745 -39755424 + AluYa5 SINE Alu 1 217 -94 422 20 0 0 chr13 62117745 62117795 -39755374 + AluY SINE Alu 82 131 -180 2184 65 0 41 chr13 62117797 62118087 -39755082 + AluY SINE Alu 17 294 -17 1498 118 26 22 chr13 62118512 62118741 -39754428 - MER30 DNA MER1_type 0 230 1 243 114 0 0 chr13 62118755 62118799 -39754370 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 25 31 0 0 chr13 62119019 62119051 -39754118 + AT_rich Low_complexity Low_complexity 1 32 0 195 222 0 0 chr13 62119426 62119471 -39753698 + (TATG)n Simple_repeat Simple_repeat 4 48 0 375 23 0 0 chr13 62119472 62119516 -39753653 + (CA)n Simple_repeat Simple_repeat 1 44 0 361 256 12 0 chr13 62119519 62119601 -39753568 - MIR SINE MIR -70 192 110 483 213 69 25 chr13 62119633 62119793 -39753376 + L1ME1 LINE L1 18 184 -6239 * 4012 236 108 74 chr13 62119779 62120213 -39752956 + L1ME1 LINE L1 3308 3726 -3215 2511 76 0 10 chr13 62120213 62120527 -39752642 + AluY SINE Alu 1 311 0 4012 236 108 74 chr13 62120527 62122747 -39750422 + L1ME1 LINE L1 3726 6052 -889 2019 205 21 24 chr13 62122747 62123133 -39750036 + L1ME1 LINE L1 6470 7014 -115 1841 178 3 0 chr13 62123133 62123436 -39749733 + AluJb SINE Alu 1 304 -8 2019 205 21 24 chr13 62123436 62123552 -39749617 + L1ME1 LINE L1 7014 7129 0 185 348 141 22 chr13 62124372 62124507 -39748662 - L2 LINE L2 -6 3266 3116 251 272 152 48 chr13 62125743 62125868 -39747301 - MIR SINE MIR -88 174 37 25 0 0 0 chr13 62126432 62126457 -39746712 + AT_rich Low_complexity Low_complexity 1 25 0 2457 69 0 0 chr13 62126536 62126840 -39746329 - AluY SINE Alu -7 304 1 416 268 76 32 chr13 62127270 62127427 -39745742 + MIR SINE MIR 49 212 -50 1561 164 38 4 chr13 62127439 62127702 -39745467 - AluJo SINE Alu -20 292 21 541 266 24 0 chr13 62127779 62127903 -39745266 - L2 LINE L2 0 3313 3187 252 0 0 0 chr13 62128450 62128478 -39744691 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2403 51 3 45 chr13 62128591 62128903 -39744266 - AluY SINE Alu -12 299 1 1253 124 0 5 chr13 62128963 62129149 -39744020 - AluSg/x SINE Alu -9 303 119 257 268 49 12 chr13 62131926 62132008 -39741161 + L3 LINE CR1 635 719 -858 753 104 0 0 chr13 62132284 62132380 -39740789 + AluS SINE Alu 2 97 -216 387 138 0 0 chr13 62132383 62132441 -39740728 + AluS SINE Alu 40 97 -206 1104 220 76 0 chr13 62132444 62132680 -39740489 + AluJo SINE Alu 40 293 -19 652 164 0 52 chr13 62133286 62133402 -39739767 - AluJb SINE Alu -16 296 187 524 152 0 0 chr13 62133402 62133481 -39739688 + Tigger1 DNA MER2_type 2340 2418 0 1193 173 89 68 chr13 62133563 62133647 -39739522 + Tigger3(Golem) DNA MER2_type 2696 2777 -251 2301 93 0 0 chr13 62133647 62133937 -39739232 + AluSc SINE Alu 1 290 -19 1193 173 89 68 chr13 62133937 62134140 -39739029 + Tigger3(Golem) DNA MER2_type 2777 2993 -35 2221 88 3 17 chr13 62134140 62134436 -39738733 - AluSx SINE Alu -20 292 1 1193 173 89 68 chr13 62134436 62134471 -39738698 + Tigger3(Golem) DNA MER2_type 2993 3026 -2 2048 114 3 26 chr13 62134471 62134778 -39738391 - AluSg SINE Alu -10 300 1 180 0 0 0 chr13 62134782 62134802 -39738367 + (T)n Simple_repeat Simple_repeat 1 20 0 1686 192 0 0 chr13 62134900 62135192 -39737977 + AluJb SINE Alu 1 292 -20 901 166 17 17 chr13 62135207 62135388 -39737781 - Tigger1 DNA MER2_type -106 2312 2132 805 101 54 0 chr13 62135394 62135523 -39737646 - AluSc SINE Alu -138 171 36 223 267 93 13 chr13 62135669 62135744 -39737425 + MIR SINE MIR 64 144 -118 566 219 0 39 chr13 62135765 62135893 -39737276 - L2 LINE L2 -4 3309 3187 211 195 24 0 chr13 62136584 62136625 -39736544 + (CCG)n Simple_repeat Simple_repeat 2 43 0 2661 30 0 10 chr13 62136786 62137090 -39736079 - AluY SINE Alu -10 301 1 1101 65 0 22 chr13 62137090 62137228 -39735941 - AluSq/x SINE Alu -178 135 1 306 330 45 9 chr13 62137678 62137790 -39735379 - L2 LINE L2 -5 3267 3152 236 100 100 0 chr13 62137790 62137830 -39735339 - Alu SINE Alu -10 292 249 309 111 22 0 chr13 62137944 62137989 -39735180 - Alu SINE Alu -257 46 1 362 271 88 59 chr13 62138010 62138180 -39734989 - MER5B DNA MER1_type -1 177 3 2368 97 10 0 chr13 62138294 62138602 -39734567 + AluSx SINE Alu 1 311 -1 2503 51 7 0 chr13 62138684 62138979 -39734190 + AluY SINE Alu 1 297 -14 27 29 0 0 chr13 62139182 62139216 -39733953 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr13 62139231 62139262 -39733907 + AT_rich Low_complexity Low_complexity 1 31 0 457 278 23 23 chr13 62139682 62139815 -39733354 - MIR SINE MIR -126 136 4 428 214 60 17 chr13 62139921 62140038 -39733131 + Charlie1 DNA MER1_type 2427 2548 -213 1300 133 87 42 chr13 62140208 62140449 -39732720 + MSTA LTR MaLR 177 428 0 2202 119 0 3 chr13 62141298 62141601 -39731568 - AluSq SINE Alu -11 302 1 1930 151 4 0 chr13 62142154 62142433 -39730736 - AluSx SINE Alu -18 294 15 1678 146 10 65 chr13 62142624 62142933 -39730236 + AluJb SINE Alu 1 292 -20 2726 136 45 51 chr13 62142936 62143234 -39729935 - L1MC3 LINE L1 -17 7768 7473 2362 90 0 0 chr13 62143234 62143533 -39729636 - AluSg SINE Alu -11 299 1 2726 136 45 51 chr13 62143533 62143762 -39729407 - L1MC3 LINE L1 -312 7473 7244 1962 161 0 0 chr13 62143890 62144189 -39728980 - AluSx SINE Alu -13 299 1 229 281 110 0 chr13 62144927 62145009 -39728160 + L1M4b LINE L1 1316 1406 -5453 2286 105 0 0 chr13 62145424 62145720 -39727449 + AluSg SINE Alu 1 296 -14 526 194 110 36 chr13 62145722 62145793 -39727376 + L1MC4 LINE L1 6800 6864 -979 2308 90 3 3 chr13 62145793 62146092 -39727077 + AluSq SINE Alu 10 308 -5 526 194 110 36 chr13 62146092 62146236 -39726933 + L1MC4 LINE L1 6864 7085 -758 403 191 0 0 chr13 62146237 62146305 -39726864 + L1MC4 LINE L1 7239 7306 -736 778 238 66 9 chr13 62146307 62146534 -39726635 - MLT1C LTR MaLR 0 467 228 3800 160 64 3 chr13 62146782 62147440 -39725729 - MER44D DNA MER2_type 0 605 36 623 167 0 146 chr13 62148341 62148485 -39724684 + FLAM_A SINE Alu 1 123 -10 1800 169 7 16 chr13 62148560 62148868 -39724301 + AluJb SINE Alu 1 305 -7 248 267 48 19 chr13 62148995 62149100 -39724069 - L1M4 LINE L1 -2680 3466 3359 1613 153 60 11 chr13 62149173 62149454 -39723715 + AluSx SINE Alu 1 295 -17 2219 140 49 15 chr13 62149457 62149863 -39723306 + L1MB3 LINE L1 5764 6183 0 317 233 63 13 chr13 62149973 62150091 -39723078 - L1ME LINE L1 -318 5848 5728 2372 92 0 3 chr13 62150221 62150524 -39722645 - AluSp SINE Alu -10 303 2 1339 176 0 0 chr13 62150525 62150747 -39722422 - AluJb SINE Alu -5 307 86 1697 179 14 10 chr13 62150754 62151050 -39722119 - AluJb SINE Alu -15 297 1 1164 103 54 80 chr13 62151619 62151724 -39721445 + L1MB3 LINE L1 5963 6069 -114 2231 100 0 17 chr13 62151724 62152023 -39721146 + AluSx SINE Alu 1 294 -18 1164 103 54 80 chr13 62152023 62152141 -39721028 + L1MB3 LINE L1 6069 6180 -3 2356 96 0 0 chr13 62152171 62152473 -39720696 - AluSq SINE Alu -11 302 1 2246 91 3 0 chr13 62152478 62152774 -39720395 - AluY SINE Alu -14 297 1 803 232 68 0 chr13 62153172 62153349 -39719820 + MER5A DNA MER1_type 1 189 0 1963 90 56 8 chr13 62153552 62153819 -39719350 + AluSg SINE Alu 1 280 -30 2331 76 26 3 chr13 62153836 62154138 -39719031 + AluY SINE Alu 1 309 -2 725 74 11 0 chr13 62154270 62154365 -39718804 + AluY SINE Alu 2 97 -214 2169 79 10 10 chr13 62154559 62154871 -39718298 - AluY SINE Alu 0 311 1 1698 197 3 10 chr13 62154872 62155172 -39717997 - AluJo SINE Alu -14 298 1 23 24 0 24 chr13 62155174 62155194 -39717975 + AT_rich Low_complexity Low_complexity 1 20 -20 900 172 23 17 chr13 62155194 62155368 -39717801 + FAM SINE Alu 1 175 0 23 24 0 24 chr13 62155368 62155388 -39717781 + AT_rich Low_complexity Low_complexity 20 40 0 718 188 0 51 chr13 62155878 62156016 -39717153 + FLAM_C SINE Alu 3 133 0 1885 73 4 0 chr13 62156091 62156325 -39716844 - AluSq SINE Alu -78 235 1 219 36 0 0 chr13 62156869 62156897 -39716272 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1702 124 93 0 chr13 62156900 62157159 -39716010 - AluSg SINE Alu -25 285 3 560 120 0 0 chr13 62157171 62157246 -39715923 - AluSq SINE Alu -18 295 221 1005 91 0 0 chr13 62157246 62157367 -39715802 - AluSq SINE Alu -125 188 68 6967 132 76 6 chr13 62157532 62158673 -39714496 - Tigger1 DNA MER2_type -1174 1244 24 2185 136 0 3 chr13 62158766 62159076 -39714093 - AluSx SINE Alu -3 309 1 1895 130 4 7 chr13 62159261 62159537 -39713632 - AluSx SINE Alu -37 275 1 350 124 83 0 chr13 62159693 62159814 -39713355 + (TA)n Simple_repeat Simple_repeat 1 131 0 2172 55 0 0 chr13 62159890 62160144 -39713025 + AluY SINE Alu 25 278 -33 1442 83 6 6 chr13 62160435 62160616 -39712553 + AluSp SINE Alu 103 283 -30 933 163 14 20 chr13 62160642 62160656 -39712513 + AluSg/x SINE Alu 122 135 -177 2242 113 3 0 chr13 62160656 62160956 -39712213 + AluSp SINE Alu 1 301 -12 933 163 14 20 chr13 62160956 62161088 -39712081 + AluSg/x SINE Alu 135 267 -45 436 313 139 14 chr13 62161260 62161468 -39711701 - MIR SINE MIR -23 239 6 285 333 75 25 chr13 62161468 62161750 -39711419 - L2 LINE L2 -1153 2161 1866 275 157 0 48 chr13 62162023 62162055 -39711114 + A-rich Low_complexity Low_complexity 5 37 -46 2060 96 14 24 chr13 62162055 62162346 -39710823 + AluSq SINE Alu 1 288 -25 275 157 0 48 chr13 62162346 62162396 -39710773 + A-rich Low_complexity Low_complexity 37 83 0 1754 152 23 19 chr13 62162413 62162722 -39710447 + AluJo SINE Alu 1 310 -2 292 326 233 39 chr13 62162879 62163514 -39709655 - L2 LINE L2 -1882 1432 675 509 306 68 37 chr13 62163663 62164046 -39709123 - L1MC4a LINE L1 -260 7548 7154 1644 162 50 20 chr13 62164050 62164353 -39708816 - AluJb SINE Alu 0 312 1 345 232 43 49 chr13 62164508 62164672 -39708497 - L1MCa LINE L1 -3952 2474 2312 1385 188 53 14 chr13 62164675 62164957 -39708212 - AluJo SINE Alu -7 305 13 1986 100 29 4 chr13 62165032 62165311 -39707858 - AluSx SINE Alu -22 290 5 1218 106 75 11 chr13 62165328 62165516 -39707653 - AluSg/x SINE Alu -4 308 109 352 123 0 0 chr13 62165612 62165669 -39707500 - AluSc SINE Alu 0 299 243 272 51 0 26 chr13 62165674 62165713 -39707456 - Alu SINE Alu -23 279 242 787 122 9 9 chr13 62165822 62165961 -39707208 + AluSc SINE Alu 168 306 0 1895 115 76 7 chr13 62165985 62166273 -39706896 - AluSp SINE Alu -5 308 1 290 275 44 0 chr13 62166280 62166371 -39706798 + MIR SINE MIR 166 260 -2 1940 130 0 3 chr13 62166408 62166745 -39706424 - AluJb SINE Alu 0 336 1 568 321 26 55 chr13 62166797 62167108 -39706061 + L2 LINE L2 2545 2846 -468 1863 188 0 3 chr13 62167179 62167483 -39705686 - AluJb SINE Alu -9 303 1 2152 115 41 0 chr13 62167587 62167882 -39705287 - AluSx SINE Alu -5 307 1 341 263 40 0 chr13 62167882 62167958 -39705211 + L2 LINE L2 3190 3268 -4 181 267 22 0 chr13 62167975 62168020 -39705149 - MIR SINE MIR -13 249 204 3488 163 68 2 chr13 62168023 62168655 -39704514 - L1MB4 LINE L1 -2 6178 5505 264 100 0 0 chr13 62168656 62168696 -39704473 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 670 235 0 0 chr13 62168717 62168836 -39704333 - AluJb SINE Alu -45 267 149 1102 166 12 57 chr13 62168875 62169056 -39704113 - L1MB4 LINE L1 -705 5479 5310 1719 136 92 0 chr13 62169056 62169328 -39703841 + AluSx SINE Alu 7 303 -9 1102 166 12 57 chr13 62169328 62169493 -39703676 - L1MB4 LINE L1 -874 5310 5139 707 253 64 45 chr13 62169750 62169952 -39703217 + MIR SINE MIR 2 207 -55 339 207 60 40 chr13 62169952 62170102 -39703067 + L1M4 LINE L1 3024 3176 -2970 * 1146 142 18 28 chr13 62170101 62170319 -39702850 + L1MB3 LINE L1 5926 6141 -42 2214 121 0 16 chr13 62170320 62170635 -39702534 + AluSg SINE Alu 1 310 0 2374 106 0 0 chr13 62170646 62170958 -39702211 + AluSx SINE Alu 1 312 0 1891 161 0 0 chr13 62170977 62171257 -39701912 + AluJo SINE Alu 6 285 -27 21 57 0 0 chr13 62171385 62171420 -39701749 + AT_rich Low_complexity Low_complexity 1 35 0 2423 50 40 10 chr13 62171638 62171935 -39701234 + AluSx SINE Alu 2 307 -5 305 259 0 0 chr13 62172016 62172097 -39701072 - AluSc SINE Alu -82 217 137 523 250 125 49 chr13 62173104 62173368 -39699801 + MER102a DNA MER1_type 32 315 -15 1957 94 38 21 chr13 62173455 62173658 -39699511 - AluY SINE Alu 0 311 124 204 40 0 0 chr13 62173658 62173683 -39699486 + (TG)n Simple_repeat Simple_repeat 2 26 0 1957 94 38 21 chr13 62173683 62173794 -39699375 - AluY SINE Alu -187 124 16 1728 155 3 43 chr13 62173853 62174157 -39699012 - AluJo SINE Alu -19 293 2 22 0 0 0 chr13 62174197 62174219 -39698950 + AT_rich Low_complexity Low_complexity 1 22 0 481 289 75 40 chr13 62174351 62174729 -39698440 - L1M4 LINE L1 -1520 4626 4230 945 216 98 5 chr13 62174729 62174933 -39698236 + MER58A DNA MER1_type 2 224 0 481 289 75 40 chr13 62174933 62174980 -39698189 - L1M4 LINE L1 -1916 4230 4186 204 122 0 73 chr13 62174989 62175009 -39698160 + (TTCA)n Simple_repeat Simple_repeat 3 20 -20 2116 135 0 0 chr13 62175009 62175306 -39697863 - AluSx SINE Alu -15 297 1 204 122 0 73 chr13 62175306 62175326 -39697843 + (TTCA)n Simple_repeat Simple_repeat 20 40 0 615 293 40 84 chr13 62175761 62175922 -39697247 + MIR SINE MIR 2 148 -114 2309 69 7 26 chr13 62175922 62176225 -39696944 + AluSp SINE Alu 1 297 -16 615 293 40 84 chr13 62176225 62176336 -39696833 + MIR SINE MIR 148 262 0 306 307 18 31 chr13 62176790 62176819 -39696350 + MER103 DNA DNA 5 33 -133 2119 96 13 17 chr13 62176819 62177121 -39696048 - AluY SINE Alu -10 301 1 306 307 18 31 chr13 62177121 62177254 -39695915 + MER103 DNA DNA 33 165 -1 2299 117 0 0 chr13 62177584 62177971 -39695198 + AluY SINE Alu 1 387 0 336 306 0 0 chr13 62178396 62178494 -39694675 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 2382 93 0 10 chr13 62178953 62179266 -39693903 - AluSx SINE Alu -2 310 1 314 269 83 20 chr13 62179439 62179469 -39693700 - L1M4 LINE L1 -2368 3778 3751 2277 138 40 3 chr13 62179469 62179816 -39693353 - MER46B DNA MER2_type -1 235 1 314 269 83 20 chr13 62179816 62179956 -39693213 - L1M4 LINE L1 -2395 3751 3599 681 190 29 36 chr13 62179989 62180126 -39693043 + FLAM_A SINE Alu 7 142 0 291 329 49 11 chr13 62180221 62180568 -39692601 - L1M4 LINE L1 -2662 3484 3125 688 300 116 21 chr13 62180575 62180912 -39692257 - MLT1G1 LTR MaLR -2 593 225 410 55 27 55 chr13 62181053 62181126 -39692043 + Alu SINE Alu 240 310 0 2403 80 0 0 chr13 62181131 62181430 -39691739 + AluY SINE Alu 3 301 -10 749 198 0 0 chr13 62181453 62181574 -39691595 + FRAM SINE Alu 24 144 -32 2133 127 0 0 chr13 62181574 62181866 -39691303 - AluSx SINE Alu -20 292 1 2280 81 7 3 chr13 62181879 62182175 -39690994 - AluY SINE Alu -14 297 1 860 206 37 5 chr13 62182205 62182394 -39690775 + L1M4 LINE L1 3915 4109 -2037 1496 140 9 9 chr13 62182418 62182646 -39690523 + MER1B DNA MER1_type 43 270 -69 2048 203 111 28 chr13 62182671 62183277 -39689892 + L1M4 LINE L1 4113 4768 -1378 1561 108 0 0 chr13 62183300 62183503 -39689666 - AluSg/x SINE Alu -15 297 95 631 238 32 0 chr13 62183603 62183729 -39689440 + AluJb SINE Alu 138 267 -45 735 133 46 46 chr13 62183732 62183883 -39689286 + MLT1B LTR MaLR 240 390 0 888 194 41 50 chr13 62183889 62184131 -39689038 + L1MC4 LINE L1 7803 8042 0 1603 253 55 41 chr13 62184137 62184680 -39688489 + L2 LINE L2 2530 3085 -228 2278 100 13 0 chr13 62184680 62184980 -39688189 + AluSx SINE Alu 1 304 -8 1603 253 55 41 chr13 62184980 62185213 -39687956 + L2 LINE L2 3085 3313 0 3517 151 12 35 chr13 62186011 62186102 -39687067 - L1P5 LINE L1 -377 5774 5682 2306 85 7 0 chr13 62186102 62186397 -39686772 - AluSg SINE Alu -13 297 1 3517 151 12 35 chr13 62186397 62187248 -39685921 - L1P5 LINE L1 -469 5682 4847 1209 149 19 0 chr13 62187247 62187455 -39685714 + L1P5 LINE L1 4604 4815 -1331 * 2148 141 0 0 chr13 62187556 62187862 -39685307 - AluSx SINE Alu -6 306 1 1253 215 166 20 chr13 62187924 62188333 -39684836 - L1ME1 LINE L1 -5 6161 5693 1233 134 0 30 chr13 62188333 62188534 -39684635 - AluSg/x SINE Alu -9 301 107 868 156 0 94 chr13 62188579 62188759 -39684410 - AluYa5 SINE Alu -14 297 135 1600 88 37 9 chr13 62188958 62189175 -39683994 + AluSg/x SINE Alu 90 312 0 2101 106 7 30 chr13 62189188 62189491 -39683678 + AluSq SINE Alu 1 296 -17 4436 153 19 3 chr13 62189833 62190565 -39682604 + Tigger2 DNA MER2_type 1 744 -1974 961 160 0 19 chr13 62190616 62190772 -39682397 - AluJo SINE Alu -159 153 1 867 109 0 23 chr13 62190801 62190929 -39682240 + FLAM_C SINE Alu 1 125 -8 23 0 0 0 chr13 62190932 62190955 -39682214 + AT_rich Low_complexity Low_complexity 1 23 0 668 121 101 0 chr13 62191198 62191297 -39681872 + AluSg/x SINE Alu 181 289 -21 264 30 0 0 chr13 62191297 62191330 -39681839 + (CA)n Simple_repeat Simple_repeat 2 34 0 1802 264 77 44 chr13 62191335 62191820 -39681349 - L2 LINE L2 -109 3204 2674 2474 86 0 0 chr13 62191820 62192121 -39681048 - AluSx SINE Alu -10 302 2 1802 264 77 44 chr13 62192121 62192485 -39680684 - L2 LINE L2 -639 2674 2324 460 140 56 28 chr13 62192485 62192592 -39680577 - L1MB8 LINE L1 -2 6176 6067 304 200 0 0 chr13 62192600 62192670 -39680499 - L2 LINE L2 -1089 2225 2156 4304 197 45 5 chr13 62192727 62193548 -39679621 + MER21B LTR ERV1 1 854 -9 299 200 17 0 chr13 62194921 62194981 -39678188 - AluS SINE Alu -239 62 2 2301 95 0 3 chr13 62195039 62195344 -39677825 + AluSc SINE Alu 1 304 -5 237 65 0 0 chr13 62196157 62196188 -39676981 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 2495 45 0 0 chr13 62196842 62197130 -39676039 - AluY SINE Alu -23 288 1 2183 101 20 0 chr13 62197461 62197757 -39675412 + AluSp SINE Alu 1 302 -11 2280 77 0 0 chr13 62197763 62198035 -39675134 + AluSp SINE Alu 1 272 -41 23 0 0 0 chr13 62198053 62198076 -39675093 + GC_rich Low_complexity Low_complexity 1 23 0 227 209 15 75 chr13 62198288 62198355 -39674814 - MIR SINE MIR -137 125 63 225 360 22 0 chr13 62198983 62199072 -39674097 - L2 LINE L2 0 3272 3182 2074 112 7 3 chr13 62199197 62199483 -39673686 + AluSq SINE Alu 1 287 -26 293 139 0 0 chr13 62199625 62199668 -39673501 - Alu SINE Alu -257 43 1 1302 153 93 72 chr13 62199780 62200028 -39673141 + MER47A DNA MER2_type 26 284 -2039 2138 110 10 0 chr13 62200028 62200320 -39672849 - AluSx SINE Alu -17 295 1 1302 153 93 72 chr13 62200320 62200405 -39672764 + MER47A DNA MER2_type 284 366 0 482 139 12 0 chr13 62200425 62200511 -39672658 + (TG)n Simple_repeat Simple_repeat 2 88 0 28 29 0 0 chr13 62200590 62200625 -39672544 + AT_rich Low_complexity Low_complexity 1 35 0 2072 130 0 17 chr13 62200663 62200964 -39672205 - AluJb SINE Alu -16 296 1 278 203 54 68 chr13 62200964 62201038 -39672131 - L1ME3A LINE L1 -62 6108 6036 2225 92 7 0 chr13 62202120 62202425 -39670744 + AluSq SINE Alu 1 307 0 22 35 0 0 chr13 62202810 62202839 -39670330 + AT_rich Low_complexity Low_complexity 1 29 0 1500 108 44 0 chr13 62204465 62204668 -39668501 - AluSg/x SINE Alu -13 299 88 732 174 0 0 chr13 62204747 62204856 -39668313 + FLAM_C SINE Alu 2 110 -33 2203 105 0 0 chr13 62204894 62205188 -39667981 + AluSg SINE Alu 1 294 -16 1765 138 25 0 chr13 62205188 62205471 -39667698 - L1MC1 LINE L1 -467 5866 5577 296 44 22 0 chr13 62205473 62205518 -39667651 + AluY SINE Alu 1 46 -257 369 185 15 0 chr13 62205629 62205694 -39667475 - AluJb SINE Alu -147 155 90 983 207 42 19 chr13 62205696 62205909 -39667260 - AluJo SINE Alu -94 218 1 383 277 0 0 chr13 62206012 62206095 -39667074 - MER3 DNA MER1_type -126 83 1 1593 180 78 0 chr13 62206585 62206869 -39666300 + AluSx SINE Alu 1 306 -6 2391 102 0 0 chr13 62206870 62207173 -39665996 + AluSp SINE Alu 2 304 -9 1084 144 0 0 chr13 62207173 62207326 -39665843 + AluSg/x SINE Alu 132 284 -26 243 79 0 0 chr13 62207326 62207364 -39665805 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 23 0 0 0 chr13 62207404 62207427 -39665742 + AT_rich Low_complexity Low_complexity 1 23 0 335 314 72 24 chr13 62207431 62207661 -39665508 - L2 LINE L2 -248 3065 2686 1403 144 5 0 chr13 62207672 62207894 -39665275 + AluSg/x SINE Alu 65 287 -25 1303 128 0 0 chr13 62208045 62208225 -39664944 + AluSg/x SINE Alu 120 299 -13 904 118 0 22 chr13 62208270 62208406 -39664763 + AluSq/x SINE Alu 1 133 -179 2323 113 0 0 chr13 62208409 62208718 -39664451 + AluSq SINE Alu 1 309 -4 192 250 66 26 chr13 62209415 62209491 -39663678 + L2 LINE L2 3173 3251 -62 2355 117 0 0 chr13 62209900 62210209 -39662960 + AluSg SINE Alu 1 309 -1 499 205 0 0 chr13 62210404 62210487 -39662682 - FRAM/FAM SINE Alu -98 78 1 2313 68 0 7 chr13 62212105 62212399 -39660770 + AluSq SINE Alu 1 292 -21 234 0 0 0 chr13 62213315 62213341 -39659828 + (CGG)n Simple_repeat Simple_repeat 2 27 0 419 245 151 119 chr13 62214752 62215123 -39658046 - L2 LINE L2 0 3313 2931 1435 195 0 66 chr13 62215123 62215426 -39657743 - AluJo SINE Alu -19 283 1 1655 123 78 0 chr13 62215474 62215742 -39657427 - L1MC1 LINE L1 0 6333 6045 8149 159 34 92 chr13 62215843 62217721 -39655448 - L1P LINE L1 -4366 1780 11 17819 97 6 14 chr13 62220684 62223299 -39649870 + L1P LINE L1 2539 5132 -1014 2572 52 0 10 chr13 62223698 62224006 -39649163 - AluY SINE Alu -6 305 1 2878 10 0 0 chr13 62224055 62224365 -39648804 - AluYa5 SINE Alu -1 310 1 7591 60 0 3 chr13 62224367 62225456 -39647713 - L1PA7 LINE L1 0 6154 5066 321 26 0 0 chr13 62225601 62225639 -39647530 + (TG)n Simple_repeat Simple_repeat 2 39 0 12590 95 24 8 chr13 62225821 62227521 -39645648 + L1P3 LINE L1 1 1727 -4734 542 183 0 0 chr13 62227562 62227644 -39645525 + AluSg SINE Alu 2 83 -227 27 0 0 0 chr13 62229583 62229610 -39643559 + AT_rich Low_complexity Low_complexity 1 27 0 2376 136 123 5 chr13 62229667 62230050 -39643119 + MSTA LTR MaLR 1 428 0 213 314 14 0 chr13 62230764 62230834 -39642335 + L2 LINE L2 2365 2435 -879 1483 189 47 13 chr13 62230836 62231188 -39641981 + MLT1A1 LTR MaLR 1 466 -1 385 337 43 109 chr13 62231198 62231685 -39641484 + L2 LINE L2 2460 2914 -400 1025 206 5 14 chr13 62231724 62231943 -39641226 - AluJo SINE Alu -15 297 81 2140 109 0 0 chr13 62231951 62232248 -39640921 - AluSg SINE Alu 0 306 10 409 295 23 8 chr13 62232286 62232415 -39640754 + L2 LINE L2 3142 3272 0 13143 121 14 4 chr13 62232860 62234959 -39638210 + L1P LINE L1 2020 4139 -2007 920 130 37 12 chr13 62235350 62235512 -39637657 - L1PA15 LINE L1 0 6165 6000 32 26 0 0 chr13 62235867 62235906 -39637263 + AT_rich Low_complexity Low_complexity 1 39 0 1406 218 7 7 chr13 62236065 62236358 -39636811 + AluJo SINE Alu 1 293 -9 22 0 0 0 chr13 62236365 62236387 -39636782 + AT_rich Low_complexity Low_complexity 1 22 0 304 223 85 11 chr13 62237111 62237205 -39635964 + L1MC4a LINE L1 7206 7306 -502 2196 100 34 0 chr13 62237311 62237602 -39635567 - AluY SINE Alu -10 301 1 1851 160 46 9 chr13 62237774 62238099 -39635070 - MER1B DNA MER1_type 0 337 1 227 299 35 23 chr13 62238176 62238263 -39634906 + L3 LINE CR1 1482 1569 -8 4462 121 44 31 chr13 62238315 62239414 -39633755 + MER11A LTR ERVK 1 1071 0 247 215 333 0 chr13 62239425 62239518 -39633651 + MIR3 SINE MIR 53 176 -32 29 47 0 0 chr13 62239761 62239804 -39633365 + AT_rich Low_complexity Low_complexity 1 43 0 993 132 107 49 chr13 62240045 62240250 -39632919 - AluJo SINE Alu -13 299 83 216 266 131 87 chr13 62240276 62240551 -39632618 + L2 LINE L2 2553 2839 -475 194 292 0 21 chr13 62240644 62240692 -39632477 + MIR SINE MIR 214 260 -2 401 249 330 0 chr13 62240694 62240891 -39632278 + L2 LINE L2 1316 1577 -1737 308 97 103 0 chr13 62240895 62241050 -39632119 + (TA)n Simple_repeat Simple_repeat 2 172 0 1489 197 0 51 chr13 62241052 62241347 -39631822 - AluJo SINE Alu -30 282 3 666 277 88 27 chr13 62241351 62241647 -39631522 + L2 LINE L2 1568 1881 -1433 220 164 49 66 chr13 62241652 62241713 -39631456 + L2 LINE L2 3241 3300 -13 194 356 27 108 chr13 62241781 62242115 -39631054 + L2 LINE L2 2966 3272 0 182 309 155 10 chr13 62242987 62243084 -39630085 - MIR SINE MIR -118 144 34 30 45 0 0 chr13 62243358 62243402 -39629767 + AT_rich Low_complexity Low_complexity 1 44 0 210 333 0 14 chr13 62243762 62243831 -39629338 - L2 LINE L2 -7 3265 3198 34 0 0 0 chr13 62244532 62244566 -39628603 + AT_rich Low_complexity Low_complexity 1 34 0 386 301 15 22 chr13 62244609 62244745 -39628424 + MIR SINE MIR 26 160 -102 21 0 0 0 chr13 62245066 62245087 -39628082 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 62245425 62245447 -39627722 + AT_rich Low_complexity Low_complexity 1 22 0 1263 163 30 21 chr13 62247238 62247471 -39625698 - MER46A DNA MER2_type 0 236 2 2207 118 3 0 chr13 62248470 62248767 -39624402 + AluSx SINE Alu 1 298 -14 241 248 38 0 chr13 62251122 62251227 -39621942 + (TATATG)n Simple_repeat Simple_repeat 3 111 0 390 338 132 0 chr13 62251252 62251388 -39621781 - MER91A DNA MER1_type -2 194 41 774 292 115 16 chr13 62251575 62252017 -39621152 - L1MC4a LINE L1 -1882 5995 5510 273 330 17 8 chr13 62252604 62252722 -39620447 - L1MC4a LINE L1 -6186 210 92 433 295 85 19 chr13 62252786 62253057 -39620112 - L1MEd LINE L1 -3175 2954 2666 688 265 65 26 chr13 62253184 62253422 -39619747 + MLT1H LTR MaLR 13 302 -247 338 260 89 4 chr13 62253448 62253577 -39619592 + MLT1H LTR MaLR 428 549 0 237 312 65 0 chr13 62253587 62253680 -39619489 - L1MEd LINE L1 -3601 2528 2430 554 283 87 51 chr13 62253808 62254341 -39618828 - L1MEd LINE L1 -4719 1591 997 393 265 145 15 chr13 62254581 62254781 -39618388 - L1MEd LINE L1 -5236 883 658 313 244 192 51 chr13 62254797 62254953 -39618216 - MIR3 SINE MIR -11 197 20 1763 163 3 20 chr13 62255436 62255737 -39617432 - AluJb SINE Alu -15 297 2 383 252 55 47 chr13 62256819 62256946 -39616223 - MIR SINE MIR -122 140 13 28 61 0 0 chr13 62257666 62257715 -39615454 + AT_rich Low_complexity Low_complexity 1 49 0 703 224 81 11 chr13 62259178 62259352 -39613817 - MER20 DNA MER1_type -33 186 1 728 164 0 25 chr13 62259379 62259501 -39613668 - FRAM SINE Alu -19 157 39 207 354 137 6 chr13 62259880 62260041 -39613128 + L2 LINE L2 2394 2575 -739 310 180 0 0 chr13 62260110 62260160 -39613009 - AluSp/q SINE Alu -35 268 219 1507 84 0 5 chr13 62260260 62260450 -39612719 - AluSx SINE Alu -123 189 1 244 371 110 15 chr13 62261239 62261511 -39611658 + L2 LINE L2 2325 2622 -692 440 279 26 13 chr13 62261656 62261810 -39611359 - Tigger8 DNA MER2_type -183 483 328 486 304 53 18 chr13 62261877 62262048 -39611121 - Tigger8 DNA MER2_type -451 215 39 286 314 81 54 chr13 62262082 62262267 -39610902 + L2 LINE L2 2628 2817 -497 315 351 41 99 chr13 62262361 62262726 -39610443 + L2 LINE L2 2927 3270 -2 212 281 0 49 chr13 62263659 62263741 -39609428 + GA-rich Low_complexity Low_complexity 4 81 0 21 36 0 0 chr13 62263840 62263868 -39609301 + AT_rich Low_complexity Low_complexity 1 28 0 231 275 0 14 chr13 62265229 62265298 -39607871 + CT-rich Low_complexity Low_complexity 4 71 0 341 255 61 20 chr13 62268060 62268158 -39605011 + L2 LINE L2 3210 3311 -2 21 0 0 0 chr13 62269471 62269492 -39603677 + AT_rich Low_complexity Low_complexity 1 21 0 29 78 0 0 chr13 62270175 62270239 -39602930 + AT_rich Low_complexity Low_complexity 1 64 0 22 70 0 0 chr13 62270791 62270834 -39602335 + AT_rich Low_complexity Low_complexity 1 43 0 484 289 84 30 chr13 62272031 62272197 -39600972 - L2 LINE L2 -6 3307 3133 * 848 243 186 14 chr13 62272195 62272561 -39600608 - L2 LINE L2 -1073 2241 1813 22 35 0 0 chr13 62272599 62272628 -39600541 + AT_rich Low_complexity Low_complexity 1 29 0 883 205 6 6 chr13 62274541 62274707 -39598462 - FAM SINE Alu -9 166 1 32 26 0 0 chr13 62274817 62274856 -39598313 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr13 62275341 62275375 -39597794 + AT_rich Low_complexity Low_complexity 1 34 0 26 82 0 0 chr13 62277164 62277225 -39595944 + AT_rich Low_complexity Low_complexity 1 61 0 2303 48 41 3 chr13 62277238 62277528 -39595641 + AluY SINE Alu 1 301 -10 706 246 32 16 chr13 62278340 62278527 -39594642 - MIR SINE MIR -54 208 19 375 279 50 50 chr13 62278922 62279101 -39594068 + MIR SINE MIR 4 182 -80 22 35 0 0 chr13 62279902 62279931 -39593238 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr13 62282445 62282481 -39590688 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr13 62283378 62283404 -39589765 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 103 chr13 62284547 62284586 -39588583 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 201 121 0 0 chr13 62285245 62285278 -39587891 + (TA)n Simple_repeat Simple_repeat 2 34 0 952 236 5 14 chr13 62286073 62286293 -39586876 + AluJo SINE Alu 1 218 -94 420 37 0 0 chr13 62286326 62286380 -39586789 + (CA)n Simple_repeat Simple_repeat 2 55 0 461 286 107 11 chr13 62287986 62288164 -39585005 + MIR SINE MIR 19 213 -49 1888 132 9 52 chr13 62289073 62289398 -39583771 + AluSx SINE Alu 1 311 -1 326 214 68 29 chr13 62289828 62289931 -39583238 - L1MC5 LINE L1 -316 7645 7539 2046 116 51 0 chr13 62290662 62290955 -39582214 - AluSg1 SINE Alu -1 308 1 368 366 56 25 chr13 62290987 62291307 -39581862 + L2 LINE L2 677 1006 -2308 792 153 0 0 chr13 62292307 62292425 -39580744 + AluJo/FLAM SINE Alu 1 118 -184 2055 106 20 3 chr13 62292427 62292720 -39580449 - AluSx SINE Alu -14 298 1 23 33 0 0 chr13 62292912 62292942 -39580227 + AT_rich Low_complexity Low_complexity 1 30 0 228 185 111 0 chr13 62293108 62293162 -39580007 - Charlie7 DNA MER1_type -2513 99 40 572 299 141 0 chr13 62296144 62296328 -39576841 + MIR SINE MIR 1 210 -52 444 217 22 65 chr13 62296669 62296771 -39576398 + MER103 DNA DNA 33 129 -37 1337 189 4 0 chr13 62296771 62297004 -39576165 + MER46A DNA MER2_type 1 234 -2 444 217 22 65 chr13 62297004 62297039 -39576130 + MER103 DNA DNA 129 164 -2 2399 187 64 50 chr13 62297200 62297696 -39575473 + MLT2B3 LTR ERVL 1 507 -47 1722 171 81 0 chr13 62297696 62298017 -39575152 - MER7A DNA MER2_type -1 345 1 2399 187 64 50 chr13 62298017 62298066 -39575103 + MLT2B3 LTR ERVL 507 554 0 219 233 110 14 chr13 62298081 62298154 -39575015 - L2 LINE L2 0 3313 3234 1772 292 155 11 chr13 62298696 62299610 -39573559 + L2 LINE L2 1252 2297 -1017 248 277 52 19 chr13 62300335 62300490 -39572679 + L1MB5 LINE L1 4903 5062 -1084 311 290 199 17 chr13 62300609 62301181 -39571988 + L1MB5 LINE L1 5256 5929 -245 424 351 5 32 chr13 62301977 62302162 -39571007 + L3 LINE CR1 1034 1213 -364 452 203 28 42 chr13 62302177 62302320 -39570849 + Zaphod DNA AcHobo 2042 2182 -1849 200 333 61 69 chr13 62302324 62302570 -39570599 + L2 LINE L2 687 930 -2384 227 299 227 36 chr13 62302922 62303226 -39569943 + L2 LINE L2 1454 1815 -1499 377 326 96 34 chr13 62303317 62303495 -39569674 + MER5A DNA MER1_type 1 189 0 662 314 169 42 chr13 62303495 62304087 -39569082 + L2 LINE L2 2116 2782 -532 748 193 0 0 chr13 62304344 62304484 -39568685 - FLAM_C SINE Alu -1 142 3 1670 217 156 65 chr13 62306438 62306828 -39566341 + LTR1B LTR ERV1 1 354 -472 2581 56 0 0 chr13 62306828 62307133 -39566036 + AluY SINE Alu 1 305 -6 1670 217 156 65 chr13 62307133 62307499 -39565670 + LTR1B LTR ERV1 354 826 0 474 177 98 85 chr13 62307780 62307944 -39565225 - L1MD2 LINE L1 0 6359 6194 204 158 0 0 chr13 62308763 62308801 -39564368 + C-rich Low_complexity Low_complexity 1 38 0 232 293 91 29 chr13 62309418 62309497 -39563672 - MER112 DNA MER1_type -39 221 148 201 74 0 0 chr13 62309497 62309524 -39563645 + (TATG)n Simple_repeat Simple_repeat 2 28 0 232 293 91 29 chr13 62309524 62309652 -39563517 - MER112 DNA MER1_type -112 148 1 23 33 0 0 chr13 62309964 62309994 -39563175 + AT_rich Low_complexity Low_complexity 1 30 0 187 200 0 73 chr13 62310287 62310342 -39562827 - L2 LINE L2 0 3313 3263 22 0 0 0 chr13 62311619 62311641 -39561528 + AT_rich Low_complexity Low_complexity 1 22 0 815 181 60 0 chr13 62311646 62311795 -39561374 - AluJb SINE Alu -21 291 134 1385 184 72 11 chr13 62311795 62312072 -39561097 - AluJb SINE Alu -16 296 3 1252 154 9 27 chr13 62312098 62312319 -39560850 + AluJb SINE Alu 85 301 -11 28 71 0 0 chr13 62312668 62312724 -39560445 + AT_rich Low_complexity Low_complexity 1 56 0 1840 136 17 17 chr13 62313003 62313297 -39559872 - AluJo SINE Alu -18 294 1 446 303 86 41 chr13 62313665 62313886 -39559283 + MIR SINE MIR 31 261 -1 1607 124 121 49 chr13 62314040 62314388 -39558781 + THE1C LTR MaLR 1 373 -2 196 268 71 0 chr13 62314404 62314460 -39558709 + L2 LINE L2 3246 3305 -8 1360 77 87 0 chr13 62314615 62314798 -39558371 - AluSp SINE Alu -12 301 103 562 260 148 5 chr13 62314805 62315001 -39558168 + MIR SINE MIR 39 262 0 2145 97 0 4 chr13 62317210 62317488 -39555681 - AluSc SINE Alu -16 293 17 519 278 124 17 chr13 62317536 62317827 -39555342 - L1MC4a LINE L1 -1911 5897 5576 251 294 24 12 chr13 62317906 62317991 -39555178 + GA-rich Low_complexity Low_complexity 5 90 0 638 323 167 21 chr13 62318175 62318707 -39554462 + L2 LINE L2 1730 2339 -975 645 179 81 0 chr13 62319587 62319710 -39553459 - FLAM_C SINE Alu 0 133 1 498 33 0 0 chr13 62321516 62321576 -39551593 + (CA)n Simple_repeat Simple_repeat 2 61 0 303 373 42 10 chr13 62321612 62321805 -39551364 + L1MC4 LINE L1 6505 6703 -1339 572 248 4 16 chr13 62321814 62321979 -39551190 + L1MC5 LINE L1 6720 6884 -924 563 216 194 65 chr13 62322002 62322404 -39550765 + L1MC5 LINE L1 7452 7905 -56 2322 38 41 0 chr13 62323797 62324087 -39549082 + AluY SINE Alu 1 302 -9 21 36 0 0 chr13 62324226 62324254 -39548915 + AT_rich Low_complexity Low_complexity 1 28 0 555 256 54 103 chr13 62324488 62324711 -39548458 - MIR SINE MIR -4 258 47 555 253 137 32 chr13 62324727 62324917 -39548252 + MIR SINE MIR 53 262 0 254 300 25 25 chr13 62325141 62325221 -39547948 + MER5A DNA MER1_type 110 189 0 2222 104 0 0 chr13 62325247 62325544 -39547625 - AluSg SINE Alu -13 297 1 1306 302 90 22 chr13 62326417 62326585 -39546584 - L2 LINE L2 -135 3178 3023 2127 103 3 0 chr13 62326585 62326867 -39546302 - AluSg SINE Alu -27 283 1 1306 302 90 22 chr13 62326867 62327410 -39545759 - L2 LINE L2 -290 3023 2426 625 320 59 5 chr13 62327482 62327704 -39545465 + MIR SINE MIR 3 236 -26 322 198 121 43 chr13 62327726 62327842 -39545327 - L2 LINE L2 -996 2318 2194 990 264 44 0 chr13 62329313 62329540 -39543629 - MIR SINE MIR -8 254 18 758 6 101 0 chr13 62329566 62329725 -39543444 + (TA)n Simple_repeat Simple_repeat 1 175 0 1130 222 105 19 chr13 62329725 62329991 -39543178 - AluJb SINE Alu -12 290 2 2084 117 13 7 chr13 62330438 62330747 -39542422 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr13 62330752 62330775 -39542394 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 361 309 128 25 chr13 62330830 62331034 -39542135 - MIR SINE MIR -6 256 32 182 172 0 0 chr13 62331100 62331129 -39542040 + L2 LINE L2 3270 3298 -15 33 43 0 0 chr13 62331454 62331501 -39541668 + AT_rich Low_complexity Low_complexity 1 47 0 1785 139 68 17 chr13 62332085 62332379 -39540790 - AluJb SINE Alu -1 311 3 23 0 0 0 chr13 62333945 62333968 -39539201 + AT_rich Low_complexity Low_complexity 1 23 0 612 129 0 0 chr13 62334313 62334414 -39538755 + L1MB3 LINE L1 6083 6183 0 1520 193 30 17 chr13 62335398 62335694 -39537475 + AluJb SINE Alu 1 300 -12 293 89 0 22 chr13 62336136 62336181 -39536988 + L1MC4 LINE L1 7865 7908 -134 22 70 0 0 chr13 62336278 62336321 -39536848 + AT_rich Low_complexity Low_complexity 1 43 0 4527 239 78 29 chr13 62337535 62338299 -39534870 - L1M4 LINE L1 -2011 4135 3409 2192 112 16 0 chr13 62338299 62338602 -39534567 - AluSx SINE Alu -2 310 3 4527 239 78 29 chr13 62338602 62339475 -39533694 - L1M4 LINE L1 -2737 3409 2419 1858 151 7 20 chr13 62341561 62341859 -39531310 - AluJb SINE Alu -12 300 7 351 0 0 0 chr13 62342328 62342367 -39530802 + (TA)n Simple_repeat Simple_repeat 1 39 0 2462 61 0 10 chr13 62342367 62342677 -39530492 - AluY SINE Alu -4 307 1 190 255 20 0 chr13 62343032 62343083 -39530086 + L2 LINE L2 1358 1409 -1905 644 87 0 47 chr13 62343232 62343359 -39529810 + (TTTCC)n Simple_repeat Simple_repeat 4 124 0 2059 122 4 0 chr13 62343360 62343639 -39529530 - AluSp SINE Alu -33 280 1 882 222 59 19 chr13 62344162 62344398 -39528771 + MIR SINE MIR 10 250 -12 1718 190 0 3 chr13 62345216 62345527 -39527642 - AluJb SINE Alu 0 312 3 208 338 130 0 chr13 62345670 62345747 -39527422 - L2 LINE L2 -41 3231 3145 248 316 86 8 chr13 62345858 62345975 -39527194 - L2 LINE L2 -480 2834 2709 543 326 158 28 chr13 62346117 62346516 -39526653 - L2 LINE L2 -647 2667 2217 2148 117 17 0 chr13 62346708 62347008 -39526161 - AluSx SINE Alu -5 307 3 2658 227 56 37 chr13 62347012 62347881 -39525288 - L1M4 LINE L1 -2842 3304 2419 1882 149 7 20 chr13 62349965 62350266 -39522903 - AluJb SINE Alu -9 303 7 2268 67 0 79 chr13 62350927 62351255 -39521914 + AluSg SINE Alu 1 302 -8 28 0 0 0 chr13 62352297 62352325 -39520844 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chr13 62352874 62352932 -39520237 + AT_rich Low_complexity Low_complexity 1 58 0 344 300 105 35 chr13 62353970 62354170 -39518999 - L3 LINE CR1 -113 1464 1251 264 337 59 0 chr13 62354259 62354360 -39518809 + MIR SINE MIR 95 201 -61 508 307 82 22 chr13 62354521 62354752 -39518417 - L3 LINE CR1 -406 1171 927 700 254 80 9 chr13 62355349 62355562 -39517607 + MIR SINE MIR 8 235 -27 2074 136 0 0 chr13 62356009 62356296 -39516873 + AluSx SINE Alu 1 287 -25 246 81 0 0 chr13 62356299 62356336 -39516833 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr13 62357250 62357275 -39515894 + AT_rich Low_complexity Low_complexity 1 25 0 278 267 69 40 chr13 62357817 62357918 -39515251 + MIR SINE MIR 113 216 -46 1975 129 18 0 chr13 62358477 62358763 -39514406 + AluSx SINE Alu 1 291 -21 361 256 12 0 chr13 62359093 62359179 -39513990 - L2 LINE L2 -7 3306 3220 3707 267 71 17 chr13 62359248 62360419 -39512750 - L2 LINE L2 -291 3022 1792 443 282 84 24 chr13 62360686 62360899 -39512270 - L2 LINE L2 -1052 2262 2037 20040 52 50 5 chr13 62362387 62364998 -39508171 + L1PA3 LINE L1 1 2728 -3418 21816 32 0 1 chr13 62365103 62368537 -39504632 + L1PA3 LINE L1 2722 6155 0 25 0 0 0 chr13 62368653 62368678 -39504491 + AT_rich Low_complexity Low_complexity 1 25 0 21 95 0 0 chr13 62369761 62369824 -39503345 + AT_rich Low_complexity Low_complexity 1 63 0 33 0 0 0 chr13 62369987 62370020 -39503149 + AT_rich Low_complexity Low_complexity 1 33 0 784 206 38 5 chr13 62371200 62371384 -39501785 + L1MB2 LINE L1 5981 6170 -1 257 247 0 35 chr13 62371500 62371585 -39501584 - L1M4c LINE L1 -4872 1512 1431 232 181 14 83 chr13 62371732 62371804 -39501365 + MER4A LTR ERV1 280 346 -318 * 892 172 21 130 chr13 62371786 62372071 -39501098 + MER4C LTR ERV1 202 455 -10 427 312 47 51 chr13 62372084 62372360 -39500809 + L1MC4a LINE L1 5607 5881 -1927 2528 47 27 0 chr13 62373952 62374250 -39498919 - AluY SINE Alu -5 306 1 697 229 33 0 chr13 62374616 62374769 -39498400 - MIR SINE MIR -104 158 1 22 0 0 0 chr13 62375085 62375107 -39498062 + AT_rich Low_complexity Low_complexity 1 22 0 407 291 121 6 chr13 62375107 62375289 -39497880 - MIR SINE MIR -56 206 4 22 56 0 0 chr13 62376081 62376117 -39497052 + AT_rich Low_complexity Low_complexity 1 36 0 2188 120 0 10 chr13 62376951 62377252 -39495917 + AluSx SINE Alu 1 298 -14 2724 246 137 40 chr13 62378023 62378484 -39494685 + L1MC4 LINE L1 5441 5856 -2186 1778 186 42 0 chr13 62378484 62378818 -39494351 - MER7A DNA MER2_type 0 346 1 2724 246 137 40 chr13 62378818 62379475 -39493694 + L1MC4 LINE L1 5856 6448 -1594 1732 186 20 7 chr13 62379475 62379771 -39493398 - AluJb SINE Alu -12 300 1 2724 246 137 40 chr13 62379771 62381028 -39492141 + L1MC4 LINE L1 6448 8041 -1 21 36 0 0 chr13 62381617 62381645 -39491524 + AT_rich Low_complexity Low_complexity 1 28 0 208 319 138 0 chr13 62381961 62382055 -39491114 - L2 LINE L2 -8 3264 3158 782 310 11 41 chr13 62382345 62382613 -39490556 + MIR SINE MIR 2 261 -1 22 0 0 0 chr13 62382754 62382776 -39490393 + AT_rich Low_complexity Low_complexity 1 22 0 220 313 12 24 chr13 62383291 62383374 -39489795 - L2 LINE L2 -1547 1767 1686 192 371 90 31 chr13 62383913 62384169 -39489000 - L2 LINE L2 -2084 1230 960 394 262 39 0 chr13 62384246 62384349 -39488820 - MIR SINE MIR -123 139 33 1893 162 21 9 chr13 62385691 62386030 -39487139 + MER2 DNA MER2_type 2 344 0 442 164 28 202 chr13 62386443 62386656 -39486513 + MER5B DNA MER1_type 2 177 -1 837 251 66 65 chr13 62386985 62387357 -39485812 + LTR16B LTR ERVL 22 462 -2 995 276 146 23 chr13 62387419 62387851 -39485318 - MLT1J LTR MaLR -20 491 7 1750 147 39 22 chr13 62388268 62388623 -39484546 + L1MB3 LINE L1 5815 6175 -8 26 0 0 0 chr13 62388879 62388905 -39484264 + AT_rich Low_complexity Low_complexity 1 26 0 695 180 0 8 chr13 62388905 62389027 -39484142 - FLAM_C SINE Alu -11 122 2 2702 7 0 0 chr13 62389275 62389572 -39483597 + AluYa5 SINE Alu 1 297 -14 22 0 0 0 chr13 62390290 62390312 -39482857 + AT_rich Low_complexity Low_complexity 1 22 0 241 65 0 0 chr13 62390341 62390372 -39482797 + U2 snRNA snRNA 6 36 -152 536 252 134 17 chr13 62391062 62391352 -39481817 + L1ME4a LINE L1 5783 6106 -15 231 88 0 0 chr13 62391402 62391436 -39481733 + (TTA)n Simple_repeat Simple_repeat 3 36 0 198 0 0 0 chr13 62391466 62391488 -39481681 + (A)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr13 62391668 62391697 -39481472 + AT_rich Low_complexity Low_complexity 1 29 0 354 74 0 0 chr13 62392114 62392168 -39481001 + (TTAAA)n Simple_repeat Simple_repeat 3 56 0 2187 104 3 0 chr13 62393217 62393515 -39479654 + AluSq SINE Alu 1 299 -14 1701 150 42 14 chr13 62394073 62394360 -39478809 + AluSx SINE Alu 1 295 -17 372 310 81 6 chr13 62394401 62394575 -39478594 - MIR SINE MIR -70 192 6 1028 289 60 58 chr13 62395442 62396202 -39476967 - L1MEd LINE L1 -4885 1234 470 2307 111 48 17 chr13 62396202 62396553 -39476616 + THE1B LTR MaLR 3 364 0 1028 289 60 58 chr13 62396553 62396608 -39476561 - L1MEd LINE L1 -5649 470 417 268 304 54 36 chr13 62396779 62396891 -39476278 + MIR SINE MIR 12 125 -137 411 241 102 12 chr13 62397201 62397367 -39475802 + L1ME LINE L1 5638 5818 -303 570 283 89 48 chr13 62397410 62397477 -39475692 + L1MC4a LINE L1 5422 5485 -2323 714 156 0 16 chr13 62397477 62397633 -39475536 + FLAM_A SINE Alu 2 155 0 570 283 89 48 chr13 62397633 62398045 -39475124 + L1MC4a LINE L1 5485 5922 -1886 2422 84 0 0 chr13 62398691 62399000 -39474169 + AluY SINE Alu 2 310 -1 2020 102 39 0 chr13 62399577 62399860 -39473309 + AluSx SINE Alu 1 294 -18 663 216 64 18 chr13 62400323 62400494 -39472675 - MER5A DNA MER1_type -7 182 4 27 0 0 0 chr13 62400544 62400571 -39472598 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 62400834 62400863 -39472306 + AT_rich Low_complexity Low_complexity 1 29 0 2007 138 0 0 chr13 62401055 62401369 -39471800 + AluSx SINE Alu 1 314 0 2241 99 0 7 chr13 62402840 62403143 -39470026 - AluSc SINE Alu -8 301 1 2272 117 0 0 chr13 62404060 62404367 -39468802 + AluSx SINE Alu 1 307 -5 322 206 82 14 chr13 62406277 62406350 -39466819 - MER58B DNA MER1_type -1 340 263 255 175 225 0 chr13 62407000 62407080 -39466089 + L1ME3A LINE L1 4562 4659 -1487 1135 231 59 9 chr13 62407328 62407652 -39465517 + L1ME3A LINE L1 5620 5959 -211 666 220 63 19 chr13 62407667 62407826 -39465343 + L1ME3A LINE L1 6005 6170 0 227 170 189 0 chr13 62407885 62407938 -39465231 + L1ME LINE L1 5504 5566 -555 336 226 85 11 chr13 62408037 62408144 -39465025 + L1ME LINE L1 5707 5820 -346 3328 141 27 34 chr13 62408250 62408873 -39464296 - L1MA4 LINE L1 -193 6107 5489 23 33 0 0 chr13 62409116 62409146 -39464023 + AT_rich Low_complexity Low_complexity 1 30 0 6383 111 13 10 chr13 62410137 62411132 -39462037 + L1MA3 LINE L1 5308 6305 0 364 273 115 14 chr13 62412346 62412485 -39460684 - MIR SINE MIR 0 262 110 2050 116 0 33 chr13 62412565 62412868 -39460301 + AluSx SINE Alu 1 293 -19 457 242 114 0 chr13 62413552 62413684 -39459485 - L2 LINE L2 -15 3257 3111 21 82 0 0 chr13 62414691 62414740 -39458429 + AT_rich Low_complexity Low_complexity 1 49 0 1850 145 24 3 chr13 62415180 62415477 -39457692 - Tigger1 DNA MER2_type -2115 303 1 33 43 0 0 chr13 62415493 62415540 -39457629 + AT_rich Low_complexity Low_complexity 1 47 0 288 243 71 0 chr13 62416030 62416100 -39457069 - MIR SINE MIR -14 248 174 246 232 0 0 chr13 62416269 62416325 -39456844 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 28 0 0 0 chr13 62418478 62418506 -39454663 + AT_rich Low_complexity Low_complexity 1 28 0 2008 151 0 3 chr13 62418663 62418962 -39454207 + AluJb SINE Alu 1 298 -14 333 0 0 0 chr13 62419131 62419168 -39454001 + (TG)n Simple_repeat Simple_repeat 2 38 0 206 218 36 0 chr13 62419226 62419281 -39453888 + (TA)n Simple_repeat Simple_repeat 2 58 0 466 306 56 22 chr13 62419507 62419687 -39453482 + MIR SINE MIR 6 191 -71 329 262 40 63 chr13 62419711 62419837 -39453332 - MIR SINE MIR -56 206 84 398 295 68 68 chr13 62420006 62420243 -39452926 - MIR SINE MIR 0 262 26 1678 108 42 4 chr13 62420882 62421142 -39452027 - Tigger4(Zombi) DNA MER2_type 0 2731 2462 216 135 0 0 chr13 62421242 62421279 -39451890 + (CA)n Simple_repeat Simple_repeat 2 38 0 375 227 72 0 chr13 62421739 62421836 -39451333 + L1 LINE L1 3572 3675 -2471 614 192 17 11 chr13 62421850 62422027 -39451142 + GA-rich Low_complexity Low_complexity 3 180 0 4967 202 60 5 chr13 62422058 62423242 -39449927 + L1 LINE L1 3683 4931 -1215 594 0 0 0 chr13 62423423 62423489 -39449680 + (CATAA)n Simple_repeat Simple_repeat 2 67 0 420 306 25 3 chr13 62423527 62423773 -39449396 - HERV16 LTR ERVL -1041 4444 4146 2421 185 70 27 chr13 62423777 62423955 -39449214 - MER119 DNA MER1_type -43 540 371 2174 109 0 0 chr13 62423955 62424257 -39448912 + AluSg SINE Alu 1 302 -8 2421 185 70 27 chr13 62424257 62424591 -39448578 - MER119 DNA MER1_type -212 371 6 183 42 0 0 chr13 62424591 62424615 -39448554 + (TG)n Simple_repeat Simple_repeat 2 25 0 281 216 63 36 chr13 62424615 62424726 -39448443 - HERV16 LTR ERVL -4151 845 732 542 246 77 0 chr13 62424769 62424899 -39448270 - HERV16 LTR ERVL -4348 648 509 784 229 75 32 chr13 62425085 62425364 -39447805 - HERV16 LTR ERVL -4705 291 1 1148 274 47 27 chr13 62425378 62425783 -39447386 - LTR16A LTR ERVL -11 439 27 809 286 59 27 chr13 62425834 62426264 -39446905 + L1MC4 LINE L1 7022 7474 -568 238 197 115 49 chr13 62426234 62426356 -39446813 + L1MC5 LINE L1 7269 7398 -563 * 654 226 147 14 chr13 62426377 62426589 -39446580 + L1ME1 LINE L1 5916 6171 -8 300 292 21 0 chr13 62428377 62428473 -39444696 + GA-rich Low_complexity Low_complexity 2 99 0 349 314 6 24 chr13 62428772 62428977 -39444192 + CT-rich Low_complexity Low_complexity 1 201 0 225 372 66 25 chr13 62429008 62429129 -39444040 - L2 LINE L2 -6 3266 3141 302 319 160 25 chr13 62429207 62429474 -39443695 + L2 LINE L2 2746 3046 -226 654 237 8 0 chr13 62429495 62429626 -39443543 + FLAM_A SINE Alu 2 133 0 2295 98 0 0 chr13 62429653 62429948 -39443221 + AluSx SINE Alu 1 295 -17 24 32 0 0 chr13 62430149 62430180 -39442989 + AT_rich Low_complexity Low_complexity 1 31 0 1229 188 62 35 chr13 62430618 62430906 -39442263 - AluJo SINE Alu -16 296 1 428 245 204 20 chr13 62431588 62431735 -39441434 + MER5A DNA MER1_type 14 187 -2 696 159 110 6 chr13 62432490 62432672 -39440497 - L1MA7 LINE L1 -10 6281 6081 268 274 0 0 chr13 62433948 62434010 -39439159 + L2 LINE L2 3244 3305 -8 358 198 128 86 chr13 62434848 62435035 -39438134 + L1ME4a LINE L1 5904 6098 -23 29 60 0 0 chr13 62435042 62435092 -39438077 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr13 62435668 62435690 -39437479 + AT_rich Low_complexity Low_complexity 1 22 0 2273 114 3 3 chr13 62435774 62436081 -39437088 + AluSx SINE Alu 1 307 -5 546 326 158 28 chr13 62436272 62436671 -39436498 + L2 LINE L2 2217 2667 -647 244 316 86 8 chr13 62436813 62436930 -39436239 + L2 LINE L2 2709 2834 -480 211 338 130 0 chr13 62437041 62437118 -39436051 + L2 LINE L2 3145 3231 -41 1737 190 0 3 chr13 62437261 62437572 -39435597 + AluJb SINE Alu 3 312 0 888 222 59 19 chr13 62438438 62438674 -39434495 - MIR SINE MIR -12 250 10 2064 135 14 0 chr13 62439197 62439494 -39433675 + AluSp SINE Alu 1 301 -12 597 88 0 44 chr13 62439495 62439609 -39433560 + (GGAAA)n Simple_repeat Simple_repeat 1 109 0 190 255 20 0 chr13 62439758 62439809 -39433360 - L2 LINE L2 -1905 1409 1358 2433 70 0 10 chr13 62440164 62440477 -39432692 + AluY SINE Alu 1 310 -1 351 0 0 0 chr13 62440604 62440643 -39432526 + (TA)n Simple_repeat Simple_repeat 2 40 0 2284 64 0 17 chr13 62440714 62441011 -39432158 - AluY SINE Alu -19 292 1 2287 84 10 7 chr13 62441013 62441311 -39431858 - AluSx SINE Alu -13 299 1 197 241 207 52 chr13 62442243 62442359 -39430810 - MIR3 SINE MIR -45 163 30 22 0 0 0 chr13 62442863 62442885 -39430284 + AT_rich Low_complexity Low_complexity 1 22 0 1321 248 95 41 chr13 62443148 62443758 -39429411 + L1ME2 LINE L1 3743 4385 -1761 3958 176 48 17 chr13 62443759 62444677 -39428492 + L1MD2 LINE L1 5204 6151 -208 764 209 14 9 chr13 62444710 62444921 -39428248 + L1ME2 LINE L1 4358 4569 -1577 * 1112 203 62 12 chr13 62444918 62445313 -39427856 + L1ME2 LINE L1 5197 5606 -560 2284 98 3 0 chr13 62445313 62445609 -39427560 + AluSq SINE Alu 1 297 -16 398 199 85 50 chr13 62446039 62446180 -39426989 + MER68 LTR ERV1 381 526 -36 718 218 36 90 chr13 62446277 62446503 -39426666 + L1ME2 LINE L1 5806 6010 -154 2347 96 6 6 chr13 62446503 62446815 -39426354 + AluSx SINE Alu 1 312 0 718 218 36 90 chr13 62446815 62446923 -39426246 + L1ME2 LINE L1 6010 6122 -42 453 363 101 20 chr13 62446964 62447311 -39425858 - L2 LINE L2 -1859 1455 1081 1992 173 51 56 chr13 62447312 62447798 -39425371 + MLT1D LTR MaLR 1 484 -21 416 51 17 0 chr13 62447930 62447989 -39425180 + (TA)n Simple_repeat Simple_repeat 1 60 0 343 286 12 0 chr13 62448149 62448233 -39424936 + L2 LINE L2 3188 3272 0 403 134 0 0 chr13 62448956 62449023 -39424146 - AluSc SINE Alu -7 302 236 202 324 81 0 chr13 62449510 62449584 -39423585 + L3 LINE CR1 1486 1565 -12 1631 175 95 0 chr13 62449881 62450166 -39423003 + AluJo SINE Alu 1 312 0 683 357 71 42 chr13 62451492 62452273 -39420896 + L2 LINE L2 2457 3257 -15 246 358 58 8 chr13 62452603 62452723 -39420446 + L2 LINE L2 3147 3272 0 22 56 0 0 chr13 62453607 62453643 -39419526 + AT_rich Low_complexity Low_complexity 1 36 0 1046 247 65 19 chr13 62454003 62454327 -39418842 - MER58B DNA MER1_type 0 341 3 2315 88 0 25 chr13 62454892 62455209 -39417960 + AluSx SINE Alu 1 309 -3 700 281 83 45 chr13 62455614 62455740 -39417429 + L1M4c LINE L1 1030 1150 -5232 198 0 0 0 chr13 62455740 62455762 -39417407 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 700 281 83 45 chr13 62455762 62456412 -39416757 + L1M4c LINE L1 1150 1792 -4590 2590 251 38 55 chr13 62456457 62456812 -39416357 + L1M4c LINE L1 2512 2872 -3510 2220 85 0 0 chr13 62456812 62457113 -39416056 + AluSg SINE Alu 1 301 0 2590 251 38 55 chr13 62457113 62457727 -39415442 + L1M4c LINE L1 2872 3449 -2933 3529 168 51 12 chr13 62457727 62458506 -39414663 + L1MA5 LINE L1 5475 6284 -16 2590 251 38 55 chr13 62458506 62459039 -39414130 + L1M4c LINE L1 3449 3990 -2392 1627 188 103 8 chr13 62459023 62459421 -39413748 + L1MB7 LINE L1 5721 6156 -28 * 901 250 72 28 chr13 62459502 62459962 -39413207 + L1M4c LINE L1 4082 4561 -1821 572 300 115 32 chr13 62460496 62460896 -39412273 + L1MEd LINE L1 1154 1586 -5048 1294 166 23 5 chr13 62461187 62461404 -39411765 + AluJo SINE Alu 88 308 -4 194 325 65 58 chr13 62461465 62461757 -39411412 + L2 LINE L2 1884 2177 -1137 762 250 148 5 chr13 62462133 62462349 -39410820 + MIR SINE MIR 16 262 0 1310 261 108 11 chr13 62462373 62462818 -39410351 - LTR16C LTR ERVL -3 488 1 220 338 94 62 chr13 62463367 62463584 -39409585 + L2 LINE L2 2524 2758 -556 2235 123 0 0 chr13 62463584 62463892 -39409277 + AluSc SINE Alu 1 308 -1 220 338 94 62 chr13 62463892 62464026 -39409143 + L2 LINE L2 2758 2886 -428 923 239 5 10 chr13 62464108 62464305 -39408864 + MER58A DNA MER1_type 1 196 -28 283 276 35 23 chr13 62464345 62464519 -39408650 + L1MEd LINE L1 1504 1679 -4863 255 262 80 119 chr13 62464629 62465015 -39408154 + L1ME LINE L1 2 372 -5698 2159 259 92 52 chr13 62465041 62466576 -39406593 + L1ME LINE L1 542 2138 -3942 514 246 44 6 chr13 62466632 62466815 -39406354 + L1ME LINE L1 2529 2718 -3362 901 231 57 0 chr13 62466895 62467176 -39405993 + L1ME LINE L1 2849 3145 -2935 * 2210 163 35 48 chr13 62467174 62467939 -39405230 + L1MC1 LINE L1 4927 5676 -657 417 167 10 21 chr13 62467939 62468034 -39405135 + L1MA8 LINE L1 6197 6291 0 3416 157 30 24 chr13 62468034 62468700 -39404469 + L1MC1 LINE L1 5661 6333 0 1822 261 98 52 chr13 62468705 62469365 -39403804 + L1ME LINE L1 3235 3964 -2116 2210 120 0 16 chr13 62469365 62469682 -39403487 + AluSx SINE Alu 1 312 0 1822 261 98 52 chr13 62469682 62470085 -39403084 + L1ME LINE L1 3964 4347 -1733 2153 134 0 6 chr13 62470692 62471005 -39402164 - AluSx SINE Alu -1 311 1 2392 50 0 86 chr13 62471411 62471750 -39401419 + AluY SINE Alu 1 310 -1 1235 183 47 0 chr13 62471750 62472029 -39401140 + MLT1C LTR MaLR 176 467 0 2038 129 0 0 chr13 62472056 62472334 -39400835 + AluSx SINE Alu 7 284 -28 270 277 99 10 chr13 62474076 62474177 -39398992 - L2 LINE L2 0 3272 3163 377 270 70 10 chr13 62474301 62474401 -39398768 - MIR SINE MIR -150 112 7 24 32 0 0 chr13 62474910 62474941 -39398228 + AT_rich Low_complexity Low_complexity 1 31 0 225 196 0 0 chr13 62476035 62476081 -39397088 + (CGG)n Simple_repeat Simple_repeat 1 46 0 231 114 0 0 chr13 62476153 62476188 -39396981 + (GGA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr13 62476304 62476329 -39396840 + (CGG)n Simple_repeat Simple_repeat 2 26 0 396 0 0 0 chr13 62476826 62476870 -39396299 + (TG)n Simple_repeat Simple_repeat 2 45 0 184 408 53 0 chr13 62479287 62479363 -39393806 + L2 LINE L2 3153 3232 -40 730 295 163 11 chr13 62479377 62479733 -39393436 - L2 LINE L2 -23 3290 2881 645 238 41 7 chr13 62479832 62479979 -39393190 + MIR SINE MIR 1 152 -110 778 223 131 109 chr13 62480174 62480686 -39392483 - LTR33A LTR ERVL 0 523 1 301 254 24 73 chr13 62481538 62481703 -39391466 - MIR SINE MIR -2 260 104 5974 72 7 32 chr13 62481893 62481920 -39391249 + L1MA1 LINE L1 5447 5473 -829 2284 97 7 3 chr13 62481920 62482230 -39390939 + AluSx SINE Alu 1 311 -1 5974 72 7 32 chr13 62482230 62483074 -39390095 + L1MA1 LINE L1 5473 6296 -6 2067 130 7 0 chr13 62483650 62483949 -39389220 + AluSc SINE Alu 3 303 -6 493 160 0 76 chr13 62483953 62484072 -39389097 + Charlie1 DNA MER1_type 1564 1673 -1088 249 83 0 0 chr13 62484072 62484108 -39389061 + (TG)n Simple_repeat Simple_repeat 2 37 0 261 146 0 0 chr13 62484560 62484608 -39388561 + (CA)n Simple_repeat Simple_repeat 1 48 0 1957 148 0 0 chr13 62484610 62484894 -39388275 - AluJb SINE Alu -28 284 1 456 230 20 40 chr13 62484894 62485046 -39388123 + Charlie1 DNA MER1_type 1669 1817 -944 9629 187 18 16 chr13 62485046 62488343 -39384826 + L1PA16 LINE L1 2857 6155 -11 2709 191 55 59 chr13 62488348 62489126 -39384043 + Charlie1 DNA MER1_type 1796 2570 -191 867 157 153 31 chr13 62489182 62489405 -39383764 + L1M4 LINE L1 5398 5647 -537 362 349 6 25 chr13 62489454 62489713 -39383456 + CT-rich Low_complexity Low_complexity 1 253 0 1011 186 54 23 chr13 62489866 62490087 -39383082 - Charlie1a DNA MER1_type -1227 228 1 2153 116 7 0 chr13 62490781 62491075 -39382094 + AluSx SINE Alu 1 296 -16 459 237 97 91 chr13 62491412 62491720 -39381449 + LTR67 LTR ERVL 245 554 -3 21 57 0 0 chr13 62491916 62491951 -39381218 + AT_rich Low_complexity Low_complexity 1 35 0 361 325 98 27 chr13 62492303 62492669 -39380500 + ERVL LTR ERVL 827 1218 -4546 824 239 88 77 chr13 62492973 62493587 -39379582 + L1MC5 LINE L1 6611 7231 -730 1586 157 10 83 chr13 62493588 62493900 -39379269 + AluJo SINE Alu 1 289 -23 186 43 0 0 chr13 62493900 62493923 -39379246 + (GGAGAA)n Simple_repeat Simple_repeat 1 23 0 306 259 280 27 chr13 62494064 62494396 -39378773 + L1MC5 LINE L1 7250 7665 -296 1962 120 19 48 chr13 62494396 62494757 -39378412 + AluSc SINE Alu 1 352 0 480 196 122 21 chr13 62494757 62494946 -39378223 + L1MC5 LINE L1 7645 7852 -109 2192 126 3 0 chr13 62496750 62497060 -39376109 + AluSx SINE Alu 2 312 0 26 0 0 0 chr13 62498058 62498084 -39375085 + AT_rich Low_complexity Low_complexity 1 26 0 260 320 72 18 chr13 62498098 62498320 -39374849 + L1ME LINE L1 5500 5733 -388 1454 201 32 46 chr13 62498554 62498927 -39374242 - MLT1A2 LTR MaLR -4 370 3 308 266 106 32 chr13 62499128 62499316 -39373853 + L1MC4a LINE L1 7142 7343 -465 307 202 125 0 chr13 62499363 62499467 -39373702 + L1MC5 LINE L1 7292 7408 -553 976 190 0 17 chr13 62499548 62499727 -39373442 - FRAM SINE Alu 0 176 1 526 289 52 23 chr13 62499808 62500151 -39373018 + L1MC4 LINE L1 7690 8042 0 473 248 26 8 chr13 62500198 62500315 -39372854 + AluJb SINE Alu 3 121 -191 1079 155 11 5 chr13 62500424 62500611 -39372558 + AluJb SINE Alu 119 306 -6 203 136 45 0 chr13 62501567 62501611 -39371558 + A-rich Low_complexity Low_complexity 2 47 0 411 169 87 10 chr13 62501625 62501862 -39371307 + AluJo SINE Alu 6 301 -11 212 315 45 11 chr13 62502021 62502110 -39371059 - MIR SINE MIR -70 192 101 183 42 0 0 chr13 62502413 62502437 -39370732 + (TG)n Simple_repeat Simple_repeat 1 24 0 1574 134 54 31 chr13 62502437 62502793 -39370376 - L1MA8 LINE L1 -140 6151 5783 361 318 20 7 chr13 62504192 62504340 -39368829 + MLT1H LTR MaLR 3 152 -397 1356 251 63 47 chr13 62504855 62505121 -39368048 - LTR40a LTR ERVL 0 519 240 2313 96 7 13 chr13 62505121 62505423 -39367746 - AluSp SINE Alu -13 300 1 1356 251 63 47 chr13 62505423 62505667 -39367502 - LTR40a LTR ERVL -279 240 1 313 259 105 42 chr13 62506215 62506322 -39366847 + L1M4 LINE L1 5191 5311 -835 890 308 57 37 chr13 62506322 62506777 -39366392 + LTR16B LTR ERVL 1 464 0 313 259 105 42 chr13 62506777 62506812 -39366357 + L1M4 LINE L1 5311 5342 -804 2061 128 3 29 chr13 62506812 62507124 -39366045 + AluSx SINE Alu 1 304 -8 399 235 250 0 chr13 62507370 62507506 -39365663 - MIR SINE MIR -2 260 91 357 24 0 0 chr13 62508956 62508998 -39364171 + (CA)n Simple_repeat Simple_repeat 2 43 0 1091 163 0 0 chr13 62509211 62509377 -39363792 + AluSg/x SINE Alu 145 310 -2 260 207 85 12 chr13 62511065 62511147 -39362022 - MER20B DNA MER1_type -6 777 690 614 235 9 16 chr13 62511196 62511412 -39361757 - MER20B DNA MER1_type -204 579 315 423 256 140 39 chr13 62511470 62511937 -39361232 + MLT1H LTR MaLR 6 555 0 993 286 15 0 chr13 62511940 62512202 -39360967 - MER20B DNA MER1_type -504 279 14 1629 184 0 26 chr13 62512340 62512645 -39360524 + AluJo SINE Alu 1 297 -15 225 298 106 53 chr13 62512673 62512881 -39360288 - L2 LINE L2 -172 3100 2882 386 264 36 7 chr13 62512984 62513124 -39360045 + MLT1J2 LTR MaLR 74 217 -233 826 271 106 34 chr13 62513242 62513476 -39359693 - LTR33 LTR ERVL -1 520 304 2257 107 0 25 chr13 62513476 62513793 -39359376 + AluSx SINE Alu 1 309 -3 826 271 106 34 chr13 62513793 62514031 -39359138 - LTR33 LTR ERVL -217 304 14 1143 144 32 106 chr13 62514114 62514462 -39358707 - L1MB7 LINE L1 0 6184 5863 402 222 11 0 chr13 62514474 62514564 -39358605 - MER31A LTR ERV1 -39 446 356 419 216 0 0 chr13 62514564 62514652 -39358517 - L1MB7 LINE L1 -302 5876 5789 937 313 28 28 chr13 62515721 62516155 -39357014 - LTR16A LTR ERVL -16 434 1 493 341 54 29 chr13 62516254 62516895 -39356274 - HERV16 LTR ERVL -361 5403 4726 1773 329 63 53 chr13 62516926 62517012 -39356157 - HERV16 LTR ERVL -1041 4613 4529 1943 146 81 113 chr13 62517012 62517532 -39355637 - MLT1D LTR MaLR -2 503 1 1773 329 63 53 chr13 62517532 62519058 -39354111 - HERV16 LTR ERVL -1125 4529 2985 272 267 47 47 chr13 62519159 62519331 -39353838 - HERV16 LTR ERVL -4717 279 108 1839 247 98 25 chr13 62519361 62519912 -39353257 - MLT1E LTR MaLR -2 591 1 1040 308 28 24 chr13 62520007 62520433 -39352736 - LTR16A LTR ERVL -6 444 17 2613 142 19 12 chr13 62520773 62521259 -39351910 + L1MB7 LINE L1 5680 6168 -16 3302 178 56 9 chr13 62521294 62521935 -39351234 + LTR51 LTR ERV1 1 671 0 1541 176 117 12 chr13 62522542 62522945 -39350224 + LTR56 LTR ERV1 1 445 0 301 186 41 62 chr13 62524125 62524222 -39348947 + LTR48B LTR ERV1 6 100 -544 226 241 164 26 chr13 62524196 62524312 -39348857 + MER39B LTR ERV1 214 345 -308 * 725 217 25 10 chr13 62524317 62524515 -39348654 + MER39 LTR ERV1 484 684 -23 479 310 35 12 chr13 62524652 62524823 -39348346 + MIR SINE MIR 20 194 -68 336 161 0 0 chr13 62524951 62525007 -39348162 + L2 LINE L2 3217 3272 0 2582 54 0 10 chr13 62526525 62526839 -39346330 - AluY SINE Alu 0 311 1 1081 293 88 18 chr13 62527013 62527457 -39345712 + LTR33 LTR ERVL 1 475 -46 523 100 0 25 chr13 62528185 62528265 -39344904 + MADE1 DNA Mariner 1 78 -2 1857 120 60 18 chr13 62529204 62529488 -39343681 - AluSc SINE Alu -13 296 1 476 259 104 28 chr13 62529529 62529780 -39343389 + L1MC5 LINE L1 7638 7907 -54 36 40 0 0 chr13 62529786 62529836 -39343333 + AT_rich Low_complexity Low_complexity 1 50 0 398 313 149 15 chr13 62529836 62530037 -39343132 + L2 LINE L2 2921 3148 -165 484 255 198 92 chr13 62530123 62530213 -39342956 + L3 LINE CR1 604 683 -894 658 223 15 0 chr13 62530213 62530343 -39342826 + FLAM_A SINE Alu 1 132 -1 484 255 198 92 chr13 62530343 62530676 -39342493 + L3 LINE CR1 683 1072 -505 358 298 16 8 chr13 62530973 62531094 -39342075 + LTR33 LTR ERVL 348 469 -52 425 293 159 24 chr13 62531229 62531437 -39341732 - MIR SINE MIR -13 249 14 188 343 89 48 chr13 62531472 62531618 -39341551 + L2 LINE L2 3121 3272 0 338 254 35 0 chr13 62532502 62532616 -39340553 - L1MC4 LINE L1 0 8042 7925 318 280 0 159 chr13 62532712 62532844 -39340325 + L2 LINE L2 3156 3266 -6 218 220 51 51 chr13 62532987 62533046 -39340123 + L2 LINE L2 3207 3265 -7 349 235 83 88 chr13 62533225 62533429 -39339740 + L3b LINE CR1 1312 1514 -69 1973 158 7 0 chr13 62533657 62533955 -39339214 - AluSx SINE Alu -12 300 1 1649 191 56 102 chr13 62534817 62535357 -39337812 + LTR40a LTR ERVL 1 515 -4 186 43 0 0 chr13 62535365 62535388 -39337781 + (T)n Simple_repeat Simple_repeat 1 23 0 2414 91 7 0 chr13 62535519 62535828 -39337341 + AluSx SINE Alu 1 311 -1 512 151 0 0 chr13 62537136 62537209 -39335960 + AluS SINE Alu 1 73 -239 366 342 87 66 chr13 62537741 62538133 -39335036 - L2 LINE L2 -18 3254 2855 1290 265 206 16 chr13 62541026 62542045 -39331124 - L1MEc LINE L1 -3078 3462 2297 266 245 0 4 chr13 62542256 62542360 -39330809 - L1PBa LINE L1 -4233 2616 2496 726 158 16 0 chr13 62542427 62542554 -39330615 - L1MB2 LINE L1 -7 6164 6036 236 254 0 0 chr13 62542554 62542621 -39330548 - L1MEc LINE L1 -4616 1924 1858 188 125 50 0 chr13 62542735 62542775 -39330394 + CT-rich Low_complexity Low_complexity 4 45 0 830 211 6 18 chr13 62542777 62542943 -39330226 - FRAM SINE Alu -2 164 1 313 283 21 105 chr13 62542945 62543136 -39330033 - L1MEc LINE L1 -5508 1213 1039 787 292 45 12 chr13 62543941 62544184 -39328985 - MIR SINE MIR 0 262 12 500 325 8 32 chr13 62544195 62544444 -39328725 + L1MC4a LINE L1 5624 5866 -1942 1501 178 32 18 chr13 62544476 62544757 -39328412 + AluJb SINE Alu 11 295 -17 21 0 0 0 chr13 62544964 62544985 -39328184 + AT_rich Low_complexity Low_complexity 1 21 0 757 263 39 59 chr13 62544989 62545449 -39327720 - L1MC5 LINE L1 -51 7910 7460 710 136 23 28 chr13 62545863 62546040 -39327129 + CT-rich Low_complexity Low_complexity 3 178 0 333 125 0 0 chr13 62546058 62546114 -39327055 + (TTCC)n Simple_repeat Simple_repeat 3 58 0 27 0 0 0 chr13 62546176 62546203 -39326966 + AT_rich Low_complexity Low_complexity 1 27 0 561 242 0 0 chr13 62548199 62548319 -39324850 + MER66A LTR ERV1 1 120 -358 * 1516 150 4 64 chr13 62548317 62548597 -39324572 + MER66B LTR ERV1 224 486 0 1784 146 29 0 chr13 62548731 62549033 -39324136 + AluSx SINE Alu 1 310 0 296 228 47 47 chr13 62549106 62549235 -39323934 - ALR/Alpha Satellite centromeric 0 129 1 2936 229 59 33 chr13 62549400 62550374 -39322795 - L1ME1 LINE L1 -6 6160 5143 2054 197 0 3 chr13 62550374 62550740 -39322429 - MLT1A1 LTR MaLR 0 365 1 2936 229 59 33 chr13 62550740 62550784 -39322385 - L1ME1 LINE L1 -1023 5143 5102 1703 187 38 71 chr13 62552578 62552857 -39320312 - LTR40b LTR ERVL 0 462 204 1980 127 3 30 chr13 62552857 62553156 -39320013 - AluSx SINE Alu -15 297 7 1703 187 38 71 chr13 62553156 62553353 -39319816 - LTR40b LTR ERVL -258 204 2 1499 191 3 24 chr13 62553435 62553733 -39319436 + MER63B DNA MER1_type 1 292 -144 420 248 66 36 chr13 62554198 62554335 -39318834 - MIR SINE MIR -4 258 118 48 18 0 0 chr13 62555208 62555263 -39317906 + AT_rich Low_complexity Low_complexity 1 55 0 290 45 23 0 chr13 62555334 62555378 -39317791 + (TA)n Simple_repeat Simple_repeat 2 46 0 343 311 154 18 chr13 62555728 62556008 -39317161 + L1ME4a LINE L1 5647 5964 -157 30 0 0 0 chr13 62556015 62556045 -39317124 + AT_rich Low_complexity Low_complexity 1 30 0 4239 154 43 45 chr13 62556724 62557555 -39315614 - MER6 DNA MER2_type 0 865 36 2024 169 68 24 chr13 62558370 62558784 -39314385 - MSTB1 LTR MaLR 0 432 1 1907 197 78 2 chr13 62558881 62559277 -39313892 - MSTB LTR MaLR 0 426 1 291 206 52 93 chr13 62560988 62561085 -39312084 - L2 LINE L2 -18 3295 3203 273 146 0 0 chr13 62562477 62562525 -39310644 + (CA)n Simple_repeat Simple_repeat 2 49 0 328 330 101 59 chr13 62562617 62563023 -39310146 + L1ME4a LINE L1 4908 5330 -816 1620 167 13 57 chr13 62563236 62563554 -39309615 + AluSx SINE Alu 6 309 -3 616 271 78 84 chr13 62563574 62564167 -39309002 + L1ME4a LINE L1 5421 6009 -112 22 0 0 0 chr13 62568410 62568432 -39304737 + AT_rich Low_complexity Low_complexity 1 22 0 6386 156 18 5 chr13 62568468 62570188 -39302981 - L1PB1 LINE L1 -3 6148 4396 189 0 0 0 chr13 62570188 62570209 -39302960 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 6386 156 18 5 chr13 62570209 62570637 -39302532 - L1PB1 LINE L1 -1755 4396 3975 4015 76 2 9 chr13 62570650 62571190 -39301979 + L1PB1 LINE L1 5616 6151 0 496 312 0 0 chr13 62571382 62571507 -39301662 - MIR3 SINE MIR -7 201 77 3945 119 17 21 chr13 62571636 62572289 -39300880 + MER39B LTR ERV1 1 650 -3 2921 114 14 2 chr13 62572485 62572914 -39300255 - MER57B LTR ERV1 0 434 1 22 56 0 0 chr13 62573269 62573305 -39299864 + AT_rich Low_complexity Low_complexity 1 36 0 711 191 0 24 chr13 62573307 62573433 -39299736 - FLAM_C SINE Alu -20 123 1 563 93 29 3 chr13 62573434 62573459 -39299710 - L1M1 LINE L1 -811 5489 5466 4542 121 16 14 chr13 62573459 62574201 -39298968 - L1MA4A LINE L1 -11 6292 5549 563 93 29 3 chr13 62574201 62574291 -39298878 - L1M1 LINE L1 -834 5466 5367 2031 205 93 4 chr13 62574691 62575155 -39298014 + MLT1D LTR MaLR 1 505 0 26 50 0 0 chr13 62575247 62575287 -39297882 + AT_rich Low_complexity Low_complexity 1 40 0 199 351 54 0 chr13 62575351 62575425 -39297744 - L2 LINE L2 0 3313 3236 2014 162 37 18 chr13 62575518 62575628 -39297541 - MLT1B LTR MaLR 0 390 283 4586 107 6 9 chr13 62575628 62576294 -39296875 + MER4A LTR ERV1 1 664 0 2014 162 37 18 chr13 62576294 62576387 -39296782 - MLT1B LTR MaLR -107 283 193 2279 91 3 3 chr13 62576387 62576684 -39296485 - AluSx SINE Alu -15 297 1 2014 162 37 18 chr13 62576684 62576862 -39296307 - MLT1B LTR MaLR -197 193 1 2231 130 37 14 chr13 62578666 62579021 -39294148 - THE1B LTR MaLR 0 364 2 1687 192 26 11 chr13 62579203 62579583 -39293586 + MER58D DNA MER1_type 1 386 0 1282 270 93 16 chr13 62579790 62580157 -39293012 - MLT1H1 LTR MaLR -149 406 12 254 296 45 28 chr13 62580218 62580394 -39292775 - L1MEd LINE L1 -5000 1205 1027 344 319 88 16 chr13 62580474 62580656 -39292513 - L1MEd LINE L1 -5413 983 789 678 273 161 34 chr13 62581517 62581947 -39291222 - MLT1H LTR MaLR -8 547 32 22 88 0 0 chr13 62582733 62582790 -39290379 + AT_rich Low_complexity Low_complexity 1 57 0 929 194 0 0 chr13 62583061 62583221 -39289948 - FAM SINE Alu -16 169 10 1970 124 0 0 chr13 62584227 62584514 -39288655 - AluSx SINE Alu 0 304 18 304 320 0 0 chr13 62584722 62584800 -39288369 - L2 LINE L2 -1 3312 3235 233 333 57 19 chr13 62584805 62584910 -39288259 + L2 LINE L2 3155 3263 -9 6819 59 3 15 chr13 62584913 62586400 -39286769 + L1PA7 LINE L1 4675 6154 0 25 31 0 0 chr13 62586916 62586948 -39286221 + AT_rich Low_complexity Low_complexity 1 32 0 32316 73 1 8 chr13 62586948 62592389 -39280780 - L1PA6 LINE L1 -12 6142 743 1098 265 206 16 chr13 62594195 62595214 -39277955 - L1MEc LINE L1 -3078 3348 2183 252 231 39 22 chr13 62595404 62595530 -39277639 - L1PBa LINE L1 -4233 2194 1725 715 158 16 0 chr13 62595596 62595723 -39277446 - L1MB2 LINE L1 -7 6164 6036 188 125 50 0 chr13 62595904 62595944 -39277225 + CT-rich Low_complexity Low_complexity 4 45 0 834 211 6 18 chr13 62595946 62596112 -39277057 - FRAM SINE Alu -2 164 1 313 283 21 105 chr13 62596114 62596305 -39276864 - L1MEc LINE L1 -5508 888 714 787 292 45 12 chr13 62597110 62597353 -39275816 - MIR SINE MIR 0 262 12 417 329 8 32 chr13 62597364 62597613 -39275556 + L1MC4a LINE L1 5624 5866 -1942 28 22 0 22 chr13 62597614 62597635 -39275534 + AT_rich Low_complexity Low_complexity 1 21 -24 828 285 40 11 chr13 62597635 62597912 -39275257 + AluJb SINE Alu 1 285 -17 28 22 0 22 chr13 62597912 62597936 -39275233 + AT_rich Low_complexity Low_complexity 21 45 0 26 30 0 0 chr13 62598118 62598151 -39275018 + AT_rich Low_complexity Low_complexity 1 33 0 29 85 0 0 chr13 62598234 62598293 -39274876 + AT_rich Low_complexity Low_complexity 1 59 0 51 17 0 0 chr13 62598402 62598460 -39274709 + AT_rich Low_complexity Low_complexity 1 58 0 1458 171 14 11 chr13 62598940 62599221 -39273948 - MSTB2 LTR MaLR -158 299 18 1026 155 40 5 chr13 62599377 62599577 -39273592 - ORSL DNA AcHobo 0 275 69 298 344 27 44 chr13 62599667 62599850 -39273319 - L2 LINE L2 -181 3091 2912 203 250 138 12 chr13 62600020 62600100 -39273069 + L3 LINE CR1 939 1028 -549 278 182 0 18 chr13 62600116 62600171 -39272998 - LTR67 LTR ERVL -14 543 490 726 128 0 0 chr13 62601201 62601318 -39271851 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 318 257 67 38 chr13 62601499 62601604 -39271565 + MIR SINE MIR 29 136 -126 3742 144 34 14 chr13 62601613 62602253 -39270916 - MER39B LTR ERV1 0 653 1 208 229 98 16 chr13 62602333 62602394 -39270775 + MIR3 SINE MIR 105 170 -38 474 254 52 67 chr13 62602507 62602661 -39270508 + L2 LINE L2 2872 3024 -248 2043 155 89 0 chr13 62602661 62603055 -39270114 + MSTB1 LTR MaLR 1 429 -3 474 254 52 67 chr13 62603055 62603093 -39270076 + L2 LINE L2 3024 3061 -211 411 373 6 0 chr13 62603346 62603515 -39269654 - MIR SINE MIR -2 260 91 185 356 14 27 chr13 62603708 62603781 -39269388 - MIR SINE MIR -188 74 3 414 279 99 41 chr13 62604028 62604200 -39268969 - MIR SINE MIR -53 209 28 271 284 187 30 chr13 62604473 62604607 -39268562 + L2 LINE L2 3118 3272 0 2316 33 0 7 chr13 62604631 62604902 -39268267 + AluY SINE Alu 40 308 -3 282 406 57 0 chr13 62605088 62605194 -39267975 - MER91A DNA MER1_type -81 115 4 606 148 0 10 chr13 62605579 62605680 -39267489 + AluSg/x SINE Alu 201 300 -10 281 207 12 0 chr13 62605754 62605836 -39267333 + (CA)n Simple_repeat Simple_repeat 2 84 0 23 0 0 0 chr13 62606150 62606173 -39266996 + AT_rich Low_complexity Low_complexity 1 23 0 385 302 99 35 chr13 62606802 62607011 -39266158 + MIR SINE MIR 11 231 -31 189 0 0 0 chr13 62607044 62607065 -39266104 + (T)n Simple_repeat Simple_repeat 1 21 0 405 301 89 42 chr13 62607303 62607516 -39265653 - MIR SINE MIR -37 225 3 1762 255 100 28 chr13 62608370 62609022 -39264147 - MER21B LTR ERV1 -150 713 15 711 205 32 16 chr13 62609097 62609282 -39263887 - MER3 DNA MER1_type -20 189 2 2880 247 64 7 chr13 62609292 62610251 -39262918 + L1M4 LINE L1 2189 3201 -2945 444 111 0 0 chr13 62610461 62610533 -39262636 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 1679 156 42 21 chr13 62610540 62610823 -39262346 - AluJo SINE Alu -23 289 1 1550 115 29 55 chr13 62611093 62611405 -39261764 + L1MA9 LINE L1 6007 6310 -2 24 0 0 70 chr13 62611620 62611663 -39261506 + AT_rich Low_complexity Low_complexity 1 40 0 297 340 74 24 chr13 62611879 62612059 -39261110 + MIR SINE MIR 15 216 -46 278 140 0 0 chr13 62612156 62612206 -39260963 - MADE1 DNA Mariner -1 79 30 473 266 77 22 chr13 62612230 62612416 -39260753 + MIR SINE MIR 52 248 -14 2470 87 13 0 chr13 62614885 62615194 -39257975 - AluSq SINE Alu 0 313 1 245 191 0 0 chr13 62615463 62615510 -39257659 + L2 LINE L2 3267 3313 0 284 319 59 42 chr13 62615561 62615680 -39257489 - L2 LINE L2 0 3313 3193 223 289 327 0 chr13 62616572 62616676 -39256493 - L2 LINE L2 -10 3262 3125 1164 154 0 77 chr13 62617137 62617358 -39255811 - AluJo SINE Alu -14 298 95 402 211 0 0 chr13 62617360 62617431 -39255738 + AluJ/FRAM SINE Alu 225 295 -17 326 246 0 0 chr13 62617683 62617744 -39255425 - AluJ/FRAM SINE Alu -23 279 219 2170 125 3 0 chr13 62619084 62619380 -39253789 - AluSq SINE Alu -16 297 1 216 0 0 0 chr13 62620035 62620059 -39253110 + (TG)n Simple_repeat Simple_repeat 2 25 0 208 77 51 0 chr13 62620070 62620109 -39253060 + (TA)n Simple_repeat Simple_repeat 1 41 0 1635 157 0 83 chr13 62620143 62620481 -39252688 - AluJo SINE Alu -2 310 1 235 280 85 85 chr13 62621361 62621479 -39251690 + L3 LINE CR1 1436 1553 -24 265 276 86 20 chr13 62622210 62622462 -39250707 + MER46C DNA MER2_type 2 306 -32 205 346 148 19 chr13 62622945 62623107 -39250062 - L3b LINE CR1 -36 1547 1365 564 292 31 22 chr13 62624184 62624410 -39248759 - MLT1J1 LTR MaLR -218 228 1 201 237 0 0 chr13 62624830 62624889 -39248280 + GA-rich Low_complexity Low_complexity 2 60 0 498 206 21 0 chr13 62625878 62625975 -39247194 - MER50 LTR ERV1 -26 708 610 2026 106 0 4 chr13 62625975 62626248 -39246921 - AluSg SINE Alu -8 302 31 6372 118 173 71 chr13 62626251 62627781 -39245388 - pTR5 LTR ERV1 0 2438 753 251 49 122 0 chr13 62627784 62627825 -39245344 - AluSg SINE Alu -254 46 1 * 3507 157 7 11 chr13 62627825 62628441 -39244728 - MER50 LTR ERV1 -121 613 1 327 25 0 0 chr13 62629911 62629951 -39243218 + (CA)n Simple_repeat Simple_repeat 2 41 0 1728 154 34 27 chr13 62631071 62631369 -39241800 + AluJo SINE Alu 1 300 -12 270 229 37 28 chr13 62632602 62632711 -39240458 - LTR67 LTR ERVL -11 546 437 500 235 174 56 chr13 62633359 62633572 -39239597 + MIR SINE MIR 25 262 0 6283 94 3 22 chr13 62633676 62633954 -39239215 - L1PA15 LINE L1 -7 6158 5876 2206 84 0 14 chr13 62633954 62634263 -39238906 - AluY SINE Alu 0 311 13 6283 94 3 22 chr13 62634263 62636037 -39237132 - L1PA15 LINE L1 -289 5876 4119 210 313 0 30 chr13 62636038 62636105 -39237064 + L2 LINE L2 2995 3059 -213 331 336 21 57 chr13 62636133 62636273 -39236896 - L2 LINE L2 -1 3271 3137 3343 84 37 24 chr13 62636713 62637251 -39235918 - L1MA2 LINE L1 0 6304 5760 881 151 10 36 chr13 62637254 62637446 -39235723 - L1M1 LINE L1 -7363 202 16 407 213 185 0 chr13 62638454 62638562 -39234607 - MIR3 SINE MIR -21 187 60 26 0 0 0 chr13 62638683 62638709 -39234460 + AT_rich Low_complexity Low_complexity 1 26 0 1128 188 22 4 chr13 62639156 62639385 -39233784 - MLT1A1 LTR MaLR 0 365 133 959 230 58 42 chr13 62639490 62639799 -39233370 + MER93a LTR ERV1 72 385 -17 696 190 15 0 chr13 62639841 62639978 -39233191 - MLT1A1 LTR MaLR -223 142 4 1426 53 24 14 chr13 62640108 62640316 -39232853 - L1MA3 LINE L1 0 6305 6096 3994 162 1 9 chr13 62640374 62641156 -39232013 - L1 LINE L1 -904 5242 4467 220 367 42 17 chr13 62641457 62641577 -39231592 - MIR SINE MIR -67 141 19 1159 274 70 52 chr13 62641593 62642133 -39231036 + LTR67 LTR ERVL 3 552 -5 189 0 0 0 chr13 62642291 62642312 -39230857 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 279 308 56 56 chr13 62643161 62643466 -39229703 + ERVL LTR ERVL 1369 1673 -4091 369 239 79 21 chr13 62643620 62643786 -39229383 + ERVL LTR ERVL 1790 2002 -3686 538 295 78 10 chr13 62643829 62644022 -39229147 - L2 LINE L2 -1 3312 3107 2503 68 3 0 chr13 62644245 62644553 -39228616 + AluY SINE Alu 1 309 -2 1274 193 80 11 chr13 62645383 62645885 -39227284 - MLT1E1 LTR MaLR 0 654 60 265 261 22 22 chr13 62646048 62646140 -39227029 - L1MC5 LINE L1 -32 7929 7838 258 295 86 9 chr13 62646146 62646251 -39226918 + L2 LINE L2 2664 2776 -538 233 308 46 31 chr13 62646293 62646423 -39226746 - L1ME LINE L1 -407 5714 5583 592 86 9 38 chr13 62647358 62647463 -39225706 - L1MB3 LINE L1 -2 6181 6080 21 0 0 0 chr13 62647682 62647703 -39225466 + AT_rich Low_complexity Low_complexity 1 21 0 2303 121 0 0 chr13 62648660 62648973 -39224196 + AluSq SINE Alu 1 313 0 264 77 0 0 chr13 62649212 62649251 -39223918 + (TC)n Simple_repeat Simple_repeat 1 39 0 31 44 0 0 chr13 62649623 62649668 -39223501 + AT_rich Low_complexity Low_complexity 1 45 0 448 239 102 88 chr13 62649927 62650153 -39223016 + MIR SINE MIR 34 262 0 269 301 42 89 chr13 62650652 62650826 -39222343 + MIR3 SINE MIR 1 169 -59 342 234 240 39 chr13 62651636 62651790 -39221379 + MIR SINE MIR 23 207 -55 423 0 0 0 chr13 62651852 62651899 -39221270 + (TG)n Simple_repeat Simple_repeat 2 48 0 844 254 99 71 chr13 62652543 62652760 -39220409 - MLT1J LTR MaLR 0 511 302 2216 91 7 0 chr13 62652760 62653046 -39220123 - AluSc SINE Alu -21 288 1 844 254 99 71 chr13 62653046 62653323 -39219846 - MLT1J LTR MaLR -209 302 3 289 294 184 0 chr13 62654552 62654661 -39218508 + MIR SINE MIR 9 137 -125 29 0 0 0 chr13 62654661 62654690 -39218479 + AT_rich Low_complexity Low_complexity 1 29 0 2173 113 0 0 chr13 62654690 62654972 -39218197 - AluSg SINE Alu -28 282 1 399 206 84 46 chr13 62654972 62655103 -39218066 + MIR SINE MIR 122 257 -5 246 313 25 0 chr13 62655586 62655666 -39217503 + MER5A DNA MER1_type 7 88 -101 191 35 0 35 chr13 62656138 62656167 -39217002 + (TTAA)n Simple_repeat Simple_repeat 1 28 0 319 242 58 50 chr13 62656429 62656549 -39216620 - L2 LINE L2 -3 3310 3190 2362 81 16 13 chr13 62656885 62657192 -39215977 + AluSc SINE Alu 2 309 0 2440 74 0 3 chr13 62657817 62658129 -39215040 + AluY SINE Alu 1 311 0 665 150 12 75 chr13 62658284 62658457 -39214712 - L1PA15 LINE L1 -5 6160 5999 24 0 0 0 chr13 62659104 62659128 -39214041 + AT_rich Low_complexity Low_complexity 1 24 0 2653 14 0 0 chr13 62659272 62659562 -39213607 - AluYa5 SINE Alu -5 306 17 255 108 0 0 chr13 62660883 62660920 -39212249 + U2 snRNA snRNA 1 37 -151 180 339 71 0 chr13 62660920 62660976 -39212193 + MIR SINE MIR 24 83 -179 212 452 0 0 chr13 62660982 62661086 -39212083 + L2 LINE L2 3186 3289 -24 644 248 82 86 chr13 62661848 62662312 -39210857 + MLT1J LTR MaLR 6 467 -44 1709 175 3 21 chr13 62662526 62662844 -39210325 - AluJb SINE Alu 0 313 1 365 228 29 106 chr13 62662847 62663120 -39210049 - L1MD3 LINE L1 0 8042 7804 860 77 0 0 chr13 62663295 62663399 -39209770 + AluSx SINE Alu 1 104 -209 2073 122 56 0 chr13 62663399 62663719 -39209450 + LTR18A LTR ERVL 3 340 -17 1534 111 9 13 chr13 62663721 62663947 -39209222 + AluSx SINE Alu 87 311 -1 2010 245 51 115 chr13 62664364 62665512 -39207657 - L1MC4 LINE L1 -225 7817 6598 2261 191 28 76 chr13 62665512 62666094 -39207075 - MLT2B3 LTR ERVL 0 554 1 2010 245 51 115 chr13 62666094 62666419 -39206750 - L1MC4 LINE L1 -1444 6598 6446 1180 101 167 5 chr13 62666419 62666617 -39206552 + MER30 DNA MER1_type 1 230 0 2010 245 51 115 chr13 62666617 62666701 -39206468 - L1MC4 LINE L1 -1596 6446 6358 2558 150 30 6 chr13 62666994 62667462 -39205707 + L1MC2 LINE L1 5857 6335 -9 290 312 39 86 chr13 62669000 62669234 -39203935 + L2 LINE L2 2440 2662 -652 312 321 64 0 chr13 62669268 62669377 -39203792 - L1ME3 LINE L1 -5 6157 6042 356 204 25 173 chr13 62669485 62669647 -39203522 - MLT1J LTR MaLR -308 154 1 1402 267 67 26 chr13 62669655 62670377 -39202792 - L1M4 LINE L1 -1599 4547 3797 262 290 10 53 chr13 62670382 62670589 -39202580 - L1M4 LINE L1 -2608 3538 3341 901 191 53 0 chr13 62670589 62670778 -39202391 - MER115 DNA AcHobo 0 4031 495 244 258 98 54 chr13 62670837 62671132 -39202037 - L1MEd LINE L1 -5246 873 566 1618 190 0 26 chr13 62671134 62671445 -39201724 - AluJo SINE Alu -9 303 1 661 106 18 9 chr13 62671460 62671573 -39201596 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 2500 59 3 3 chr13 62671879 62672183 -39200986 - AluY SINE Alu -7 304 1 2868 106 9 7 chr13 62674302 62674737 -39198432 - L1PA11 LINE L1 -35 6139 5704 21 0 0 0 chr13 62674976 62674997 -39198172 + AT_rich Low_complexity Low_complexity 1 21 0 446 304 71 46 chr13 62676030 62676251 -39196918 + MIR SINE MIR 16 252 -10 194 337 31 41 chr13 62676264 62676362 -39196807 + MIR SINE MIR 50 146 -62 346 171 98 65 chr13 62676517 62676640 -39196529 + MER58B DNA MER1_type 199 325 -16 210 118 0 0 chr13 62677257 62677291 -39195878 + (TC)n Simple_repeat Simple_repeat 1 34 0 201 333 145 8 chr13 62677961 62678078 -39195091 - L2 LINE L2 -4 3268 3136 180 0 0 0 chr13 62678092 62678112 -39195057 + (TG)n Simple_repeat Simple_repeat 2 21 0 272 261 26 17 chr13 62678120 62678235 -39194934 + (TA)n Simple_repeat Simple_repeat 1 116 0 2544 179 52 6 chr13 62678639 62679120 -39194049 + MLT1D LTR MaLR 1 503 -2 843 216 91 14 chr13 62679662 62679870 -39193299 - MIR SINE MIR -37 225 2 332 383 34 37 chr13 62679977 62680246 -39192923 - L2 LINE L2 -174 3098 2831 505 181 9 35 chr13 62680317 62680433 -39192736 + MER3 DNA MER1_type 93 205 -4 2182 97 3 7 chr13 62681987 62682287 -39190882 + AluSq SINE Alu 1 299 -14 227 387 73 38 chr13 62682967 62683254 -39189915 + L2 LINE L2 2976 3272 0 831 266 103 18 chr13 62683287 62683618 -39189551 + L1MC4a LINE L1 5548 5906 -1902 3178 133 35 77 chr13 62683815 62683961 -39189208 + L1MC1 LINE L1 5681 5832 -501 763 183 8 0 chr13 62683961 62684092 -39189077 - FLAM_C SINE Alu -1 132 1 3178 133 35 77 chr13 62684092 62684609 -39188560 + L1MC1 LINE L1 5832 6316 -17 302 323 45 13 chr13 62684707 62684862 -39188307 - MER117 DNA MER1_type -35 162 3 1550 182 32 35 chr13 62686038 62686351 -39186818 - AluJb SINE Alu 0 312 1 805 137 15 8 chr13 62686422 62686553 -39186616 - AluSx SINE Alu -14 296 165 1239 139 0 0 chr13 62686715 62686887 -39186282 - AluSx SINE Alu -140 172 1 22 35 0 0 chr13 62687271 62687300 -39185869 + AT_rich Low_complexity Low_complexity 1 29 0 284 354 97 0 chr13 62688991 62689135 -39184034 - MIR3 SINE MIR -13 195 38 2103 127 3 0 chr13 62689886 62690186 -39182983 - AluSx SINE Alu -11 301 1 201 208 20 40 chr13 62691000 62691101 -39182068 + (TATAA)n Simple_repeat Simple_repeat 2 100 0 308 282 30 122 chr13 62691218 62691312 -39181857 + L1ME LINE L1 4550 4651 -1495 2308 75 10 0 chr13 62691312 62691604 -39181565 - AluY SINE Alu -16 295 1 308 282 30 122 chr13 62691604 62691771 -39181398 + L1ME LINE L1 4651 4787 -1359 25 51 0 0 chr13 62691937 62691976 -39181193 + AT_rich Low_complexity Low_complexity 1 39 0 305 360 10 0 chr13 62691988 62692088 -39181081 - L2 LINE L2 -5 3308 3208 274 287 132 35 chr13 62692336 62692714 -39180455 - L2 LINE L2 -260 3012 2577 344 297 36 12 chr13 62693131 62693296 -39179873 + L1ME LINE L1 5521 5689 -432 208 210 113 73 chr13 62693580 62693704 -39179465 + MIR SINE MIR 134 262 0 1906 72 4 0 chr13 62693934 62694193 -39178976 + AluSg SINE Alu 44 303 0 227 391 35 23 chr13 62694440 62694698 -39178471 - L3 LINE CR1 -1192 385 125 2733 13 0 0 chr13 62694853 62695153 -39178016 - AluYa5 SINE Alu -11 300 1 1147 107 2 5 chr13 62695365 62695556 -39177613 - L1PA16 LINE L1 -155 5999 5814 306 299 72 10 chr13 62695620 62695717 -39177452 + MIR SINE MIR 20 122 -86 390 311 131 10 chr13 62698092 62698298 -39174871 + MIR SINE MIR 20 250 -12 463 291 0 21 chr13 62698480 62698621 -39174548 - MLT1J LTR MaLR -57 454 317 21 0 0 0 chr13 62699125 62699146 -39174023 + AT_rich Low_complexity Low_complexity 1 21 0 314 273 206 30 chr13 62699925 62700090 -39173079 - MIR SINE MIR -56 206 13 2154 118 17 12 chr13 62700337 62700683 -39172486 + THE1B LTR MaLR 1 348 -16 2787 104 23 0 chr13 62700688 62701121 -39172048 - L1M1 LINE L1 -504 5799 5357 25 0 0 0 chr13 62701121 62701146 -39172023 + AT_rich Low_complexity Low_complexity 1 25 0 2566 149 24 27 chr13 62701792 62701874 -39171295 - L1MB7 LINE L1 -16 6168 6087 1769 180 0 0 chr13 62701874 62702158 -39171011 + AluSx SINE Alu 1 284 -28 311 0 26 0 chr13 62702158 62702197 -39170972 + (TA)n Simple_repeat Simple_repeat 2 41 0 2566 149 24 27 chr13 62702197 62702624 -39170545 - L1MB7 LINE L1 -95 6089 5660 268 313 122 0 chr13 62702874 62703005 -39170164 + MIR SINE MIR 46 192 -70 1617 168 56 76 chr13 62703192 62703442 -39169727 - MLT1B LTR MaLR -5 385 131 219 36 0 0 chr13 62703442 62703470 -39169699 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7752 19 2 24 chr13 62703470 62704799 -39168370 - L1PA3 LINE L1 -6 6149 4834 1617 168 56 76 chr13 62704799 62704940 -39168229 - MLT1B LTR MaLR -257 133 1 368 298 149 0 chr13 62705513 62705674 -39167495 - MIR SINE MIR -10 252 68 606 243 139 18 chr13 62705799 62706136 -39167033 - LTR16A1 LTR ERVL -2 455 78 206 291 35 47 chr13 62706416 62706502 -39166667 - MIR SINE MIR -51 211 127 390 197 13 0 chr13 62706643 62706719 -39166450 - MER81 DNA DNA 0 114 38 330 198 128 107 chr13 62706730 62706972 -39166197 - ORSL DNA AcHobo -28 247 1 303 283 171 44 chr13 62707155 62707360 -39165809 + L2 LINE L2 3042 3272 0 289 299 28 0 chr13 62707370 62707482 -39165687 + MIR3 SINE MIR 60 176 -32 33 25 0 0 chr13 62707874 62707914 -39165255 + AT_rich Low_complexity Low_complexity 1 40 0 526 281 38 0 chr13 62709216 62709376 -39163793 - MIR SINE MIR -45 217 52 1017 197 48 0 chr13 62709402 62709610 -39163559 + MER20 DNA MER1_type 2 219 0 2260 97 0 13 chr13 62710302 62710611 -39162558 + AluSx SINE Alu 1 305 -7 447 317 36 32 chr13 62710835 62711021 -39162148 + MIR SINE MIR 4 187 -65 405 0 0 0 chr13 62711281 62711326 -39161843 + (CACAA)n Simple_repeat Simple_repeat 4 48 0 1571 182 3 33 chr13 62711924 62712226 -39160943 + AluJb SINE Alu 1 293 -19 385 336 40 94 chr13 62713352 62713703 -39159466 - L2 LINE L2 -7 3265 2934 250 286 126 50 chr13 62713869 62714068 -39159101 - L2 LINE L2 -26 3287 3074 184 321 156 9 chr13 62714213 62714322 -39158847 + L2 LINE L2 2932 3056 -216 305 256 18 65 chr13 62714870 62715038 -39158131 + CT-rich Low_complexity Low_complexity 3 162 0 213 98 39 20 chr13 62715051 62715102 -39158067 + CT-rich Low_complexity Low_complexity 4 55 0 594 272 22 56 chr13 62716983 62717163 -39156006 - MER5B DNA MER1_type -2 176 3 321 328 26 0 chr13 62718027 62718143 -39155026 + MIR SINE MIR 70 188 -74 800 252 144 30 chr13 62718416 62718785 -39154384 - MLT1J2 LTR MaLR -39 411 1 1989 154 0 0 chr13 62718950 62719248 -39153921 + AluSx SINE Alu 1 298 -14 260 202 21 53 chr13 62720222 62720316 -39152853 + MER58B DNA MER1_type 247 337 -4 399 334 180 9 chr13 62722124 62722441 -39150728 - L3 LINE CR1 -9 1568 1198 228 135 0 0 chr13 62722620 62722657 -39150512 + (T)n Simple_repeat Simple_repeat 1 37 0 1399 118 0 0 chr13 62722662 62722848 -39150321 - AluSg1 SINE Alu -63 246 61 757 47 47 2 chr13 62723011 62723246 -39149923 + AluY SINE Alu 1 298 -13 2425 75 3 3 chr13 62723257 62723562 -39149607 + AluSp SINE Alu 1 305 -8 189 0 0 0 chr13 62723563 62723584 -39149585 + (TA)n Simple_repeat Simple_repeat 2 22 0 2040 173 88 17 chr13 62724318 62724739 -39148430 - MLT1C LTR MaLR -16 451 1 368 229 12 12 chr13 62724994 62725077 -39148092 - L2 LINE L2 -4 3309 3227 601 82 21 10 chr13 62725491 62725588 -39147581 + (TCTA)n Simple_repeat Simple_repeat 4 101 0 21 36 0 0 chr13 62725914 62725942 -39147227 + AT_rich Low_complexity Low_complexity 1 28 0 473 294 158 63 chr13 62727804 62728521 -39144648 + L2 LINE L2 1605 2389 -925 3252 131 2 0 chr13 62728538 62729057 -39144112 - L1P LINE L1 -1538 4608 4089 1904 174 5 18 chr13 62729064 62729444 -39143725 - THE1C LTR MaLR 0 375 1 791 277 16 10 chr13 62730013 62730323 -39142846 - LTR55 LTR ERV -2 546 235 198 292 92 25 chr13 62730474 62730594 -39142575 - L2 LINE L2 -818 2496 2369 180 216 0 0 chr13 62731338 62731389 -39141780 + CT-rich Low_complexity Low_complexity 1 51 0 220 317 49 44 chr13 62731572 62731755 -39141414 - L2 LINE L2 -189 3083 2900 22 35 0 0 chr13 62733540 62733569 -39139600 + AT_rich Low_complexity Low_complexity 1 29 0 960 195 28 80 chr13 62734034 62734094 -39139075 - L1M LINE L1 -808 5338 5276 2233 86 0 4 chr13 62734094 62734374 -39138795 - AluSx SINE Alu -23 289 11 960 195 28 80 chr13 62734374 62734741 -39138428 - L1M LINE L1 -870 5276 4988 415 289 7 56 chr13 62735061 62735203 -39137966 - MIR3 SINE MIR -48 160 26 180 229 0 0 chr13 62736834 62736869 -39136300 + L2 LINE L2 3217 3251 -21 3529 248 74 132 chr13 62737415 62739779 -39133390 + L2 LINE L2 20 2245 -1069 656 254 203 34 chr13 62739777 62740072 -39133097 + L2 LINE L2 2964 3308 -5 * 213 103 17 103 chr13 62741532 62741590 -39131579 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr13 62743328 62743358 -39129811 + AT_rich Low_complexity Low_complexity 1 30 0 307 296 0 0 chr13 62744391 62744472 -39128697 + MER103 DNA DNA 38 118 -48 1732 156 22 35 chr13 62744566 62744881 -39128288 - AluJo SINE Alu -1 311 1 512 80 0 11 chr13 62745276 62745364 -39127805 + (TG)n Simple_repeat Simple_repeat 1 87 0 2249 115 0 0 chr13 62748067 62748362 -39124807 + AluSq SINE Alu 1 295 -18 574 296 75 10 chr13 62748417 62748616 -39124553 - MIR SINE MIR -1 261 50 315 0 0 0 chr13 62748705 62748740 -39124429 + (TG)n Simple_repeat Simple_repeat 1 35 0 1408 129 5 0 chr13 62749990 62750192 -39122977 - AluJo SINE Alu -24 288 86 205 250 71 0 chr13 62750429 62750485 -39122684 + MIR3 SINE MIR 101 160 -48 333 268 92 49 chr13 62750485 62750649 -39122520 - MER102b DNA MER1_type 0 341 171 1891 157 3 0 chr13 62750712 62750998 -39122171 - AluJo SINE Alu -25 287 1 456 312 11 43 chr13 62751858 62752044 -39121125 + MIR3 SINE MIR 11 190 -18 1756 120 0 0 chr13 62752203 62752445 -39120724 - AluSq SINE Alu -71 242 1 22 35 0 0 chr13 62754399 62754428 -39118741 + AT_rich Low_complexity Low_complexity 1 29 0 270 218 18 41 chr13 62756776 62756946 -39116223 + (TATG)n Simple_repeat Simple_repeat 1 166 0 226 136 17 51 chr13 62756953 62757012 -39116157 + (TG)n Simple_repeat Simple_repeat 2 58 0 303 248 297 0 chr13 62757478 62757579 -39115590 + MIR SINE MIR 22 152 -110 24 0 0 0 chr13 62757714 62757738 -39115431 + AT_rich Low_complexity Low_complexity 1 24 0 1893 97 71 4 chr13 62757741 62758010 -39115159 + AluY SINE Alu 1 287 -24 390 315 6 28 chr13 62758053 62758234 -39114935 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 244 381 0 0 chr13 62758244 62758349 -39114820 + (TG)n Simple_repeat Simple_repeat 2 106 0 1486 152 38 70 chr13 62759052 62759367 -39113802 - AluJo SINE Alu -7 305 1 247 314 147 0 chr13 62760216 62760318 -39112851 + MIR SINE MIR 30 146 -62 1990 140 0 0 chr13 62760334 62760620 -39112549 + AluSx SINE Alu 1 286 -26 341 326 69 6 chr13 62761415 62761590 -39111579 + MIR3 SINE MIR 2 187 -21 856 257 34 0 chr13 62761625 62761831 -39111338 + MIR SINE MIR 15 227 -35 36 0 0 0 chr13 62761950 62761986 -39111183 + AT_rich Low_complexity Low_complexity 1 36 0 2306 87 7 0 chr13 62762193 62762491 -39110678 + AluY SINE Alu 7 306 -5 1001 196 36 18 chr13 62763125 62763344 -39109825 - MER58A DNA MER1_type 0 224 2 457 315 7 14 chr13 62763716 62763862 -39109307 + MIR SINE MIR 70 214 -48 345 200 13 0 chr13 62763986 62764061 -39109108 + MER116 DNA Mariner 5 80 0 327 49 0 0 chr13 62764461 62764502 -39108667 + (T)n Simple_repeat Simple_repeat 1 41 0 308 317 5 106 chr13 62765581 62765789 -39107380 + MIR SINE MIR 20 206 -56 403 316 8 0 chr13 62766720 62766837 -39106332 - MIR3 SINE MIR -49 159 42 361 233 39 58 chr13 62767184 62767287 -39105882 - MIR3 SINE MIR -3 205 105 24 0 0 0 chr13 62767366 62767390 -39105779 + AT_rich Low_complexity Low_complexity 1 24 0 593 242 73 36 chr13 62767855 62768021 -39105148 - MER112 DNA MER1_type 0 260 83 378 0 0 0 chr13 62768021 62768063 -39105106 + (TG)n Simple_repeat Simple_repeat 1 42 0 593 242 73 36 chr13 62768063 62768115 -39105054 - MER112 DNA MER1_type -177 83 34 23 0 0 0 chr13 62768288 62768311 -39104858 + AT_rich Low_complexity Low_complexity 1 23 0 454 175 12 0 chr13 62770255 62770335 -39102834 - AluJ/FLAM SINE Alu -220 92 12 210 208 0 0 chr13 62770346 62770394 -39102775 + CT-rich Low_complexity Low_complexity 2 49 0 332 285 115 8 chr13 62771170 62771300 -39101869 - MIR SINE MIR -72 190 47 22 0 0 0 chr13 62771927 62771949 -39101220 + AT_rich Low_complexity Low_complexity 1 22 0 514 315 75 66 chr13 62772822 62773556 -39099613 + L2 LINE L2 2448 3256 -16 1666 179 0 4 chr13 62774469 62774749 -39098420 + AluJo SINE Alu 22 300 -12 642 112 10 0 chr13 62775240 62775338 -39097831 + HY3 scRNA scRNA 1 99 -2 198 0 0 0 chr13 62775338 62775360 -39097809 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1356 124 99 153 chr13 62775758 62775969 -39097200 - MLT1B LTR MaLR 0 390 210 2215 109 0 3 chr13 62775969 62776272 -39096897 - AluSg SINE Alu -8 302 1 1356 124 99 153 chr13 62776272 62776472 -39096697 - MLT1B LTR MaLR -180 210 1 281 148 37 0 chr13 62776790 62776844 -39096325 - L2 LINE L2 -4 3309 3254 2119 153 37 3 chr13 62777885 62778237 -39094932 - THE1B LTR MaLR 0 364 1 302 310 97 0 chr13 62778238 62778322 -39094847 - MIR SINE MIR -44 218 144 1715 180 57 41 chr13 62778322 62778689 -39094480 + THE1C LTR MaLR 1 373 -2 302 310 97 0 chr13 62778689 62778749 -39094420 - MIR SINE MIR -118 144 60 225 321 24 8 chr13 62779062 62779242 -39093927 + MIR SINE MIR 40 254 -8 1275 185 25 0 chr13 62779243 62779524 -39093645 + L1MA4 LINE L1 6013 6300 0 281 151 57 9 chr13 62779953 62780059 -39093110 + (TA)n Simple_repeat Simple_repeat 1 111 0 4111 111 17 26 chr13 62781537 62782195 -39090974 - MER39B LTR ERV1 -1 652 1 1292 165 15 38 chr13 62782355 62782616 -39090553 - L1M4 LINE L1 -401 5777 5523 260 336 107 0 chr13 62782745 62782876 -39090293 + L3 LINE CR1 1316 1460 -117 213 167 0 0 chr13 62782918 62782954 -39090215 - MER5A DNA MER1_type -3 186 151 205 229 0 0 chr13 62782951 62782986 -39090183 - MER5A DNA MER1_type -154 35 1 * 505 300 50 12 chr13 62783025 62783185 -39089984 + MER5B DNA MER1_type 1 166 -12 1234 227 58 3 chr13 62783290 62783598 -39089571 + L1MD3 LINE L1 7666 7990 -5 1671 184 33 38 chr13 62783768 62784159 -39089010 - MLT1B LTR MaLR -1 389 1 2885 9 0 0 chr13 62785104 62785419 -39087750 + AluYb8 SINE Alu 1 315 -3 929 232 5 0 chr13 62787764 62787949 -39085220 + MER5A DNA MER1_type 1 186 -3 334 293 87 20 chr13 62788106 62788256 -39084913 + MIR SINE MIR 9 168 -94 331 247 47 0 chr13 62789215 62789300 -39083869 - L1MC4 LINE L1 -1339 6703 6615 353 294 0 34 chr13 62789305 62789424 -39083745 + L1MC4 LINE L1 6614 6728 -1314 286 308 84 19 chr13 62790031 62790138 -39083031 + L2 LINE L2 3150 3263 -9 478 308 50 36 chr13 62791532 62791753 -39081416 + MIR SINE MIR 34 257 -5 21 71 0 0 chr13 62791955 62791997 -39081172 + AT_rich Low_complexity Low_complexity 1 42 0 518 253 7 34 chr13 62793349 62793484 -39079685 + MIR3 SINE MIR 25 155 -53 541 253 54 18 chr13 62793484 62793650 -39079519 + MER5B DNA MER1_type 1 172 -6 344 324 9 9 chr13 62796741 62796846 -39076323 + MIR3 SINE MIR 98 202 -6 22 35 0 0 chr13 62797734 62797763 -39075406 + AT_rich Low_complexity Low_complexity 1 29 0 234 336 56 14 chr13 62798754 62798897 -39074272 + MIR3 SINE MIR 60 208 0 2149 112 0 3 chr13 62799071 62799366 -39073803 + AluSp SINE Alu 1 294 -19 420 226 212 77 chr13 62799640 62799914 -39073255 - L2 LINE L2 -51 3262 2952 7806 181 25 51 chr13 62800895 62801620 -39071549 + L1MC3 LINE L1 4838 4033 -2113 1934 191 57 24 chr13 62801620 62802000 -39071169 + MSTB1 LTR MaLR 1 398 -34 2379 87 0 0 chr13 62802000 62802310 -39070859 - AluY SINE Alu -1 310 1 1934 191 57 24 chr13 62802310 62802347 -39070822 + MSTB1 LTR MaLR 398 432 0 7806 181 25 51 chr13 62802347 62803685 -39069484 + L1MC3 LINE L1 4032 5403 -743 2303 132 40 38 chr13 62804181 62804652 -39068517 + L1MB3 LINE L1 5703 6174 -9 23 33 0 0 chr13 62805039 62805069 -39068100 + AT_rich Low_complexity Low_complexity 1 30 0 2089 99 0 75 chr13 62805578 62805900 -39067269 - AluY SINE Alu -13 298 1 518 247 100 21 chr13 62906436 62906626 -38966543 + MIR SINE MIR 48 252 -10 833 152 78 29 chr13 62906628 62906832 -38966337 - MER20 DNA MER1_type -5 214 1 2169 132 0 6 chr13 62907523 62907870 -38965299 - AluSq SINE Alu 0 313 1 29 70 0 0 chr13 62907870 62907927 -38965242 + AT_rich Low_complexity Low_complexity 1 57 0 857 209 0 0 chr13 62907974 62908127 -38965042 - AluJb SINE Alu -24 288 136 418 121 0 0 chr13 62908175 62908233 -38964936 - FRAM/FAM SINE Alu -115 61 4 21 0 0 0 chr13 62909673 62909694 -38963475 + AT_rich Low_complexity Low_complexity 1 21 0 227 294 20 0 chr13 62909987 62910038 -38963131 - L2 LINE L2 -20 3252 3201 1299 171 29 0 chr13 62910040 62910245 -38962924 + AluSg/x SINE Alu 89 299 -11 270 133 0 0 chr13 62910340 62910385 -38962784 + AluSc SINE Alu 247 291 -8 1865 170 3 0 chr13 62910405 62910705 -38962464 + AluSx SINE Alu 1 301 -11 1770 153 29 16 chr13 62911145 62911453 -38961716 - AluJo SINE Alu 0 312 1 429 281 50 55 chr13 62911627 62911826 -38961343 - L2 LINE L2 -1 3312 3115 686 269 62 11 chr13 62912035 62912244 -38960925 - MIR SINE MIR -60 202 3 28 0 0 0 chr13 62912542 62912570 -38960599 + GC_rich Low_complexity Low_complexity 1 28 0 648 125 0 0 chr13 62913074 62913178 -38959991 + FRAM SINE Alu 67 170 -6 2237 118 0 0 chr13 62913194 62913491 -38959678 + AluSx SINE Alu 1 297 -15 194 259 0 86 chr13 62913611 62913692 -38959477 - L2 LINE L2 0 3272 3199 433 324 72 7 chr13 62913984 62914123 -38959046 + MIR SINE MIR 7 154 -108 249 184 0 0 chr13 62914131 62914169 -38959000 + Alu SINE Alu 2 39 -263 37 86 0 0 chr13 62914495 62914588 -38958581 + AT_rich Low_complexity Low_complexity 1 93 0 2108 115 0 25 chr13 62914997 62915311 -38957858 + AluSx SINE Alu 6 311 -1 883 195 48 5 chr13 62915311 62915521 -38957648 + LTR47B LTR ERVL 18 236 -207 1872 163 3 7 chr13 62915832 62916121 -38957048 + AluJb SINE Alu 1 288 -24 465 19 0 0 chr13 62916121 62916175 -38956994 + (TG)n Simple_repeat Simple_repeat 2 55 0 2168 104 9 25 chr13 62916516 62916833 -38956336 + AluSx SINE Alu 1 312 0 610 151 0 0 chr13 62916924 62917017 -38956152 - AluJb SINE Alu -63 249 157 601 129 11 0 chr13 62917021 62917114 -38956055 + LTR39 LTR ERV1 224 317 -466 362 168 42 32 chr13 62917247 62917342 -38955827 - L1MB7 LINE L1 0 6184 6089 1984 117 57 0 chr13 62917876 62918159 -38955010 - AluSx SINE Alu -13 299 1 709 198 184 39 chr13 62918172 62918509 -38954660 - L1MD2 LINE L1 -2 6357 5897 248 349 6 57 chr13 62918985 62919052 -38954117 - L2 LINE L2 -666 2648 2579 878 214 31 58 chr13 62919052 62919276 -38953893 + MER20 DNA MER1_type 2 219 0 248 349 6 57 chr13 62919276 62919383 -38953786 - L2 LINE L2 -735 2579 2483 261 333 82 25 chr13 62919493 62919652 -38953517 - L2 LINE L2 -830 2484 2317 207 69 0 0 chr13 62920033 62920062 -38953107 + (ATG)n Simple_repeat Simple_repeat 2 30 0 333 267 58 2 chr13 62921013 62921148 -38952021 + MIR SINE MIR 33 173 -55 390 74 0 0 chr13 62921409 62921463 -38951706 + (CA)n Simple_repeat Simple_repeat 2 55 0 309 288 17 42 chr13 62923036 62923154 -38950015 + MIR SINE MIR 7 121 -141 337 352 88 58 chr13 62923544 62924078 -38949091 - L1M2 LINE L1 -6295 554 5 4401 148 44 40 chr13 62924088 62925160 -38948009 + L1P3 LINE L1 11 977 -5169 4310 64 4 0 chr13 62925266 62925827 -38947342 + L1PA7 LINE L1 5592 6154 0 2679 17 0 0 chr13 62925829 62926126 -38947043 + AluYa5 SINE Alu 1 297 -14 668 300 88 11 chr13 62926567 62926827 -38946342 + MLT1J LTR MaLR 2 281 -230 1413 214 106 37 chr13 62926864 62927298 -38945871 + MLT1D LTR MaLR 20 483 -22 5918 219 14 10 chr13 62927459 62929326 -38943843 + L1MC/D LINE L1 3698 5573 -743 276 30 0 0 chr13 62929813 62929846 -38943323 + (CA)n Simple_repeat Simple_repeat 2 34 0 248 300 130 10 chr13 62930957 62931080 -38942089 + MIR SINE MIR 13 148 -60 255 310 0 0 chr13 62931089 62931160 -38942009 - L2 LINE L2 -1 3271 3201 1718 165 35 15 chr13 62931256 62931596 -38941573 - MER7A DNA MER2_type 0 346 2 361 237 10 10 chr13 62932067 62932164 -38941005 + L1MC3 LINE L1 7184 7280 -505 11755 102 0 19 chr13 62932167 62933987 -38939182 + L1P LINE L1 751 2536 -3610 193 331 203 7 chr13 62934486 62934634 -38938535 + MIR SINE MIR 9 185 -77 281 389 70 37 chr13 62934775 62935045 -38938124 + L2 LINE L2 2993 3271 -1 233 213 0 0 chr13 62937332 62937379 -38935790 + CT-rich Low_complexity Low_complexity 3 49 0 411 270 0 0 chr13 62937529 62937629 -38935540 - L1ME LINE L1 -565 5599 5500 379 332 119 5 chr13 62937753 62937955 -38935214 + L2 LINE L2 2118 2342 -972 252 260 31 16 chr13 62938246 62938373 -38934796 - L1ME LINE L1 -239 5882 5754 328 311 30 30 chr13 62938383 62938550 -38934619 - L1ME LINE L1 -1724 4422 4256 2777 223 66 22 chr13 62938911 62939772 -38933397 - L1MC3 LINE L1 0 7785 6887 182 261 152 11 chr13 62939918 62940010 -38933159 + MIR SINE MIR 147 251 -11 610 280 65 19 chr13 62940600 62940861 -38932308 - MLT1J2 LTR MaLR -175 275 3 618 273 53 26 chr13 62941112 62941416 -38931753 - L1ME3A LINE L1 -213 5957 5646 347 271 50 77 chr13 62942832 62943013 -38930156 + MIR SINE MIR 53 228 -34 5734 230 29 30 chr13 62944065 62946578 -38926591 + L1PBb LINE L1 589 3192 -3011 823 216 9 9 chr13 62946545 62946777 -38926392 + L1 LINE L1 3325 3556 -2647 * 18500 67 10 1 chr13 62946883 62950154 -38923015 + L1PA6 LINE L1 2882 6175 0 391 165 0 143 chr13 62951475 62951608 -38921561 - Charlie7 DNA MER1_type -2 2610 2497 2436 122 8 25 chr13 62953618 62954013 -38919156 - L1MA8 LINE L1 -283 6008 5621 244 171 24 0 chr13 62954297 62954379 -38918790 + (TA)n Simple_repeat Simple_repeat 2 85 0 308 125 16 0 chr13 62954411 62954475 -38918694 + T-rich Low_complexity Low_complexity 4 68 0 231 275 14 0 chr13 62956188 62956257 -38916912 + MIR3 SINE MIR 126 195 -13 2141 108 3 10 chr13 62956593 62956898 -38916271 + AluSp SINE Alu 1 303 -10 193 324 0 15 chr13 62957212 62957280 -38915889 - L2 LINE L2 0 3272 3206 880 198 19 33 chr13 62957287 62957499 -38915670 - MER3 DNA MER1_type 0 209 1 1546 189 20 93 chr13 62957733 62958130 -38915039 - MLT1A2 LTR MaLR 0 374 7 27932 80 3 39 chr13 62958375 62963450 -38909719 + L1PA6 LINE L1 1268 6153 -1 2217 161 8 0 chr13 62963569 62963949 -38909220 - L1MC1 LINE L1 -5 6328 5946 1279 237 23 6 chr13 62964049 62964403 -38908766 - L1MCa LINE L1 -3168 3258 2899 2971 162 35 40 chr13 62964417 62965220 -38907949 - L1MCa LINE L1 -3991 2435 1543 * 5802 195 43 14 chr13 62965217 62966482 -38906687 - L1MCa LINE L1 -5105 1321 20 265 330 55 64 chr13 62967289 62967525 -38905644 + L2 LINE L2 2952 3185 -87 291 157 0 0 chr13 62968300 62968351 -38904818 + L1PB4 LINE L1 3759 3809 -2337 2078 150 36 14 chr13 62968356 62968717 -38904452 + THE1C LTR MaLR 7 375 0 5501 78 33 0 chr13 62968756 62969520 -38903649 + L1PA12 LINE L1 5373 6161 -7 4653 149 28 5 chr13 62969523 62970335 -38902834 + L1PB4 LINE L1 5315 6145 -11 1062 194 0 24 chr13 62970350 62970556 -38902613 + AluJo SINE Alu 96 296 -16 1317 176 35 44 chr13 62971148 62971185 -38901984 - LTR45B LTR ERV1 -132 357 321 3358 79 22 5 chr13 62971185 62971630 -38901539 - MLT2A2 LTR ERVL 0 453 1 1317 176 35 44 chr13 62971630 62971901 -38901268 - LTR45B LTR ERV1 -168 321 3 463 262 110 7 chr13 62971934 62972079 -38901090 - MIR SINE MIR -101 161 2 2856 65 35 5 chr13 62974223 62974621 -38898548 - L1PA8 LINE L1 0 6172 5763 2150 104 7 0 chr13 62974689 62974986 -38898183 + AluSq SINE Alu 14 312 -1 21 0 0 0 chr13 62975179 62975200 -38897969 + AT_rich Low_complexity Low_complexity 1 21 0 288 204 0 19 chr13 62975262 62975316 -38897853 - FLAM SINE Alu -13 120 68 3365 61 0 0 chr13 62978217 62978642 -38894527 - L1PA5 LINE L1 -11 6143 5719 281 326 91 29 chr13 62980687 62980862 -38892307 - L2 LINE L2 -530 2784 2599 460 318 195 34 chr13 62981611 62982952 -38890217 + L2 LINE L2 616 2172 -1142 1296 199 37 15 chr13 62982953 62983405 -38889764 + MLT1D LTR MaLR 1 505 0 332 301 106 64 chr13 62983473 62983880 -38889289 - MLT1J1 LTR MaLR -5 441 18 615 346 109 31 chr13 62983982 62984845 -38888324 + L2 LINE L2 2324 3271 -1 21 36 0 0 chr13 62984957 62984985 -38888184 + AT_rich Low_complexity Low_complexity 1 28 0 270 95 0 0 chr13 62985177 62985219 -38887950 + (TG)n Simple_repeat Simple_repeat 1 42 0 1412 163 35 123 chr13 62985220 62985620 -38887549 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr13 62985999 62986023 -38887146 + AT_rich Low_complexity Low_complexity 1 24 0 1842 156 46 21 chr13 62987198 62987538 -38885631 - MLT1A1 LTR MaLR -12 445 1 252 312 136 40 chr13 62988225 62988310 -38884859 + MIR3 SINE MIR 48 150 -58 2293 188 48 30 chr13 62988310 62988806 -38884363 - MLT1D LTR MaLR 0 505 1 252 312 136 40 chr13 62988806 62988845 -38884324 + MIR3 SINE MIR 150 184 -24 192 40 0 0 chr13 62990043 62990068 -38883101 + (TG)n Simple_repeat Simple_repeat 2 26 0 2263 84 0 0 chr13 62990464 62990778 -38882391 - AluY SINE Alu 0 314 1 186 252 39 87 chr13 62992184 62992229 -38880940 - L2 LINE L2 -2 3270 3224 1050 163 126 8 chr13 62992229 62992475 -38880694 - ORSL DNA AcHobo 0 275 1 186 252 39 87 chr13 62992475 62992532 -38880637 - L2 LINE L2 -48 3224 3173 2301 143 78 5 chr13 62993195 62993594 -38879575 + MSTA LTR MaLR 1 428 0 367 256 62 101 chr13 62993739 62993868 -38879301 - L2 LINE L2 -5 3267 3144 2303 116 3 0 chr13 62993893 62994220 -38878949 - LTR1 LTR ERV1 0 785 458 709 266 41 0 chr13 62994324 62994493 -38878676 + Tigger2 DNA MER2_type 2542 2717 -1 860 183 59 81 chr13 62994493 62994766 -38878403 + L1MC3 LINE L1 7519 7785 0 321 26 0 0 chr13 62995103 62995141 -38878028 + (TG)n Simple_repeat Simple_repeat 2 39 0 1120 95 0 1 chr13 62995321 62995478 -38877691 + L1P3 LINE L1 1 471 -5990 28838 125 14 75 chr13 62995547 62997289 -38875880 + L1P LINE L1 2 1849 -4297 2092 128 0 28 chr13 62997289 62997608 -38875561 + AluSg SINE Alu 1 310 0 28838 125 14 75 chr13 62997608 63001426 -38871743 + L1P LINE L1 1849 5222 -924 17319 183 35 42 chr13 63001526 63005943 -38867226 - L1P3 LINE L1 -1890 4571 52 3319 184 33 32 chr13 63006166 63007073 -38866096 + L1MB3 LINE L1 5062 5969 -214 2260 102 0 3 chr13 63007073 63007368 -38865801 + AluSc SINE Alu 1 294 -15 3319 184 33 32 chr13 63007368 63007379 -38865790 + L1MB3 LINE L1 5969 5978 -205 616 284 157 23 chr13 63008512 63008900 -38864269 - L3 LINE CR1 -715 862 423 24 111 0 0 chr13 63009430 63009538 -38863631 + AT_rich Low_complexity Low_complexity 1 108 0 391 280 70 45 chr13 63010033 63010221 -38862948 + MIR SINE MIR 30 220 -42 347 298 161 18 chr13 63011303 63011521 -38861648 + MIR SINE MIR 2 250 -12 2040 115 0 56 chr13 63011998 63012319 -38860850 - AluSx SINE Alu -9 303 1 606 205 159 7 chr13 63012392 63012543 -38860626 + MER63A DNA MER1_type 37 210 0 237 190 138 0 chr13 63013181 63013239 -38859930 + MIR SINE MIR 173 238 -24 249 372 18 9 chr13 63013342 63013455 -38859714 - MIR SINE MIR -147 115 2 273 330 48 10 chr13 63013759 63013862 -38859307 + MIR3 SINE MIR 71 177 -31 44 20 0 0 chr13 63013879 63013930 -38859239 + AT_rich Low_complexity Low_complexity 1 51 0 213 308 31 0 chr13 63014694 63014759 -38858410 - MIR3 SINE MIR -19 189 123 1216 264 87 72 chr13 63017049 63017427 -38855742 + L1ME LINE L1 2913 3284 -2862 1957 152 0 3 chr13 63017427 63017717 -38855452 - AluSx SINE Alu -21 291 3 1216 264 87 72 chr13 63017717 63018583 -38854586 + L1ME LINE L1 3284 4175 -1971 423 58 159 0 chr13 63018642 63018711 -38854458 + MADE1 DNA Mariner 1 80 0 * 1478 159 16 0 chr13 63018711 63018966 -38854203 + Tigger7 DNA MER2_type 2225 2483 -8 543 281 158 10 chr13 63018966 63019372 -38853797 + L1ME LINE L1 4202 4667 -1479 794 158 97 18 chr13 63020122 63020287 -38852882 - MER45A DNA AcHobo 0 178 1 206 268 54 0 chr13 63021596 63021652 -38851517 - MIR SINE MIR -99 163 105 235 239 30 30 chr13 63021661 63021728 -38851441 + MIR SINE MIR 126 192 -70 274 331 247 10 chr13 63022267 63022724 -38850445 + L2 LINE L2 2750 3309 -4 379 294 75 11 chr13 63023004 63023191 -38849978 + L1ME LINE L1 5344 5542 -2266 468 277 62 6 chr13 63023428 63023605 -38849564 + L1ME LINE L1 5546 5732 -438 323 259 54 20 chr13 63023679 63023826 -38849343 - L1MEd LINE L1 -3344 2785 2634 718 296 82 99 chr13 63023958 63024243 -38848926 - L1MEd LINE L1 -5307 812 524 2072 120 24 0 chr13 63024243 63024535 -38848634 + AluSx SINE Alu 1 299 -13 718 296 82 99 chr13 63024535 63024978 -38848191 - L1MEd LINE L1 -5595 524 96 200 328 30 0 chr13 63024991 63025058 -38848111 + MIR SINE MIR 157 225 -37 4309 176 11 27 chr13 63025751 63025926 -38847243 - L1MB7 LINE L1 -5 6179 6003 859 178 97 144 chr13 63025926 63026309 -38846860 + MLT1A1 LTR MaLR 1 365 0 4309 176 11 27 chr13 63026309 63027016 -38846153 - L1MB7 LINE L1 -181 6003 5311 22 70 0 0 chr13 63027016 63027059 -38846110 + AT_rich Low_complexity Low_complexity 1 43 0 373 274 66 33 chr13 63028040 63028281 -38844888 + L1MC4a LINE L1 5676 5924 -1884 294 274 234 0 chr13 63029986 63030110 -38843059 + MIR SINE MIR 95 247 -15 913 177 79 10 chr13 63033372 63033575 -38839594 - MER20 DNA MER1_type -2 217 1 273 29 0 0 chr13 63034025 63034059 -38839110 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 63034918 63034939 -38838230 + AT_rich Low_complexity Low_complexity 1 21 0 320 347 60 12 chr13 63035192 63035443 -38837726 + L1ME LINE L1 5555 5817 -304 32 26 0 0 chr13 63035667 63035706 -38837463 + AT_rich Low_complexity Low_complexity 1 39 0 2239 117 0 0 chr13 63035716 63036014 -38837155 - AluSx SINE Alu -14 298 1 1889 143 61 28 chr13 63036160 63036523 -38836646 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr13 63037065 63037093 -38836076 + AT_rich Low_complexity Low_complexity 1 28 0 506 224 224 0 chr13 63037111 63037263 -38835906 + MER5A DNA MER1_type 2 187 -2 554 286 33 0 chr13 63038335 63038517 -38834652 - MER5A DNA MER1_type 0 189 2 291 313 24 66 chr13 63038559 63038725 -38834444 + MLT1L LTR MaLR 1 159 -456 323 261 76 25 chr13 63038992 63039111 -38834058 + MLT1L LTR MaLR 412 536 -79 356 182 11 0 chr13 63039148 63039236 -38833933 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 298 351 116 32 chr13 63039556 63040135 -38833034 + L2 LINE L2 2634 3256 -57 277 246 58 0 chr13 63040282 63040351 -38832818 - MIR SINE MIR -98 164 92 21 0 0 0 chr13 63041271 63041292 -38831877 + AT_rich Low_complexity Low_complexity 1 21 0 670 336 20 26 chr13 63041295 63041646 -38831523 + L1MC/D LINE L1 5306 5654 -2154 2536 62 13 0 chr13 63041661 63041968 -38831201 + AluSp SINE Alu 1 311 -2 1427 176 68 61 chr13 63042202 63042629 -38830540 + MSTB1 LTR MaLR 1 430 -2 15114 129 18 10 chr13 63043136 63045535 -38827634 + Tigger1 DNA MER2_type 1 2418 0 4563 68 8 10 chr13 63045999 63046612 -38826557 + L1PA10 LINE L1 5545 6156 -12 22 56 0 0 chr13 63046740 63046776 -38826393 + AT_rich Low_complexity Low_complexity 1 36 0 719 194 96 110 chr13 63047393 63047748 -38825421 + MLT1D LTR MaLR 1 350 -155 313 154 0 0 chr13 63047754 63047806 -38825363 + MLT1E2 LTR MaLR 565 616 -10 2268 129 14 0 chr13 63048360 63048709 -38824460 + L1PA15 LINE L1 5811 6164 -1 2488 88 0 0 chr13 63049466 63049773 -38823396 + AluSq SINE Alu 2 308 -5 355 304 90 50 chr13 63049942 63050143 -38823026 + MIR SINE MIR 35 243 -19 342 297 31 56 chr13 63050229 63050424 -38822745 - L1ME4a LINE L1 -48 6073 5884 27 29 0 0 chr13 63050661 63050695 -38822474 + AT_rich Low_complexity Low_complexity 1 34 0 225 146 0 42 chr13 63051644 63051692 -38821477 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 603 287 145 28 chr13 63052396 63052824 -38820345 + MLT1J LTR MaLR 3 480 -31 716 295 78 4 chr13 63053198 63053442 -38819727 - MIR SINE MIR 0 262 1 2321 100 7 0 chr13 63053952 63054253 -38818916 + AluSx SINE Alu 1 303 -9 2132 125 0 7 chr13 63054268 63054571 -38818598 + AluSx SINE Alu 5 305 -7 1617 236 56 21 chr13 63054637 63055069 -38818100 + L2 LINE L2 1732 2178 -1136 288 0 0 0 chr13 63055439 63055471 -38817698 + (CA)n Simple_repeat Simple_repeat 2 33 0 1184 144 86 8 chr13 63055693 63055936 -38817233 - LTR1 LTR ERV1 -523 262 1 1202 234 102 16 chr13 63055947 63056328 -38816841 - LTR52 LTR ERVL -3 418 5 331 157 26 35 chr13 63057321 63057436 -38815733 + GA-rich Low_complexity Low_complexity 3 116 0 2177 80 0 24 chr13 63058368 63058679 -38814490 - AluY SINE Alu 0 304 1 36080 90 4 13 chr13 63059857 63066056 -38807113 + L1PA6 LINE L1 11 6149 -5 253 284 43 60 chr13 63066264 63066380 -38806789 - MIR3 SINE MIR -6 202 89 26 93 0 0 chr13 63066436 63066511 -38806658 + AT_rich Low_complexity Low_complexity 1 75 0 234 62 0 0 chr13 63066975 63067007 -38806162 + (TA)n Simple_repeat Simple_repeat 2 33 0 1485 231 88 14 chr13 63068060 63068519 -38804650 - MLT1G LTR MaLR -33 497 5 2779 116 36 0 chr13 63068872 63069285 -38803884 - MSTA LTR MaLR 0 428 1 1821 157 0 14 chr13 63070247 63070533 -38802636 - AluSx SINE Alu -25 287 6 234 239 0 0 chr13 63070731 63070802 -38802367 + (TA)n Simple_repeat Simple_repeat 1 71 0 1410 237 61 43 chr13 63072598 63073088 -38800081 + MLT1D LTR MaLR 7 505 0 718 182 88 0 chr13 63073137 63073296 -38799873 + MER63A DNA MER1_type 38 210 0 500 163 57 35 chr13 63073297 63073438 -38799731 - MER103 DNA DNA -13 153 10 294 79 0 0 chr13 63075112 63075150 -38798019 + U2 snRNA snRNA 1 38 -150 329 255 164 15 chr13 63177969 63178095 -38695074 - MIR SINE MIR -62 146 14 3718 213 9 81 chr13 63178382 63178807 -38694362 - L1PB3 LINE L1 -6 6148 5694 255 61 0 0 chr13 63178807 63178840 -38694329 + (TATG)n Simple_repeat Simple_repeat 4 36 0 3718 213 9 81 chr13 63178840 63180450 -38692719 - L1PB3 LINE L1 -460 5694 4261 1466 60 44 12 chr13 63182101 63182350 -38690819 - LTR7 LTR ERV1 -2 448 192 215 280 129 76 chr13 63182507 63182639 -38690530 - MER5A DNA MER1_type -11 178 40 797 166 11 17 chr13 63182644 63182825 -38690344 + CT-rich Low_complexity Low_complexity 1 180 0 1198 80 11 0 chr13 63182826 63183002 -38690167 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 886 166 0 0 chr13 63183025 63183164 -38690005 - FRAM SINE Alu -39 137 1 301 214 146 58 chr13 63183221 63183324 -38689845 + L2 LINE L2 3151 3262 -10 493 41 14 14 chr13 63183768 63183841 -38689328 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 22 35 0 0 chr13 63184177 63184206 -38688963 + AT_rich Low_complexity Low_complexity 1 29 0 2391 47 0 10 chr13 63188751 63189050 -38684119 - AluY SINE Alu -15 296 1 823 139 12 24 chr13 63189172 63189338 -38683831 + L1MA7 LINE L1 6128 6291 0 439 233 85 8 chr13 63189955 63190084 -38683085 + MIR SINE MIR 47 185 -77 21 0 0 0 chr13 63190084 63190105 -38683064 + AT_rich Low_complexity Low_complexity 1 21 0 345 298 48 43 chr13 63190144 63190352 -38682817 - MIR SINE MIR -1 261 53 1509 154 30 33 chr13 63190374 63190673 -38682496 + MER50 LTR ERV1 7 304 -430 648 203 62 108 chr13 63191006 63191311 -38681858 + MER58B DNA MER1_type 46 336 -5 284 322 96 0 chr13 63191319 63191434 -38681735 - MIR3 SINE MIR -49 159 34 402 329 222 21 chr13 63192478 63193001 -38680168 + L2 LINE L2 2221 2848 -466 343 332 145 28 chr13 63193063 63193388 -38679781 + L2 LINE L2 2937 3299 -14 501 154 82 18 chr13 63193388 63193498 -38679671 - L1M1 LINE L1 -584 5721 5605 5586 70 14 7 chr13 63193831 63194591 -38678578 + MER4E LTR ERV1 1 766 0 2376 34 41 3 chr13 63194841 63195134 -38678035 + AluY SINE Alu 1 304 -7 22 99 0 0 chr13 63196399 63196470 -38676699 + AT_rich Low_complexity Low_complexity 1 71 0 29 0 0 0 chr13 63196512 63196541 -38676628 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 63198576 63198598 -38674571 + AT_rich Low_complexity Low_complexity 1 22 0 548 272 73 34 chr13 63198972 63199178 -38673991 + MIR SINE MIR 49 262 0 23 68 0 0 chr13 63199673 63199717 -38673452 + AT_rich Low_complexity Low_complexity 1 44 0 200 267 0 0 chr13 63200496 63200541 -38672628 + G-rich Low_complexity Low_complexity 4 48 0 22 0 0 0 chr13 63201008 63201030 -38672139 + AT_rich Low_complexity Low_complexity 1 22 0 202 224 0 0 chr13 63201488 63201537 -38671632 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 139 0 0 chr13 63204210 63204246 -38668923 + (A)n Simple_repeat Simple_repeat 1 36 0 222 305 17 34 chr13 63204732 63204850 -38668319 + CT-rich Low_complexity Low_complexity 3 118 0 197 62 0 31 chr13 63205728 63205760 -38667409 + (CA)n Simple_repeat Simple_repeat 1 31 0 267 173 0 0 chr13 63206555 63206607 -38666562 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 36 0 0 chr13 63207423 63207451 -38665718 + AT_rich Low_complexity Low_complexity 1 28 0 227 276 17 0 chr13 63208198 63208256 -38664913 - MIR SINE MIR -118 144 86 23 68 0 0 chr13 63209138 63209182 -38663987 + AT_rich Low_complexity Low_complexity 1 44 0 639 293 62 15 chr13 63209537 63209797 -38663372 - L1ME4a LINE L1 -213 5908 5621 2099 186 47 2 chr13 63209797 63210205 -38662964 - MSTC LTR MaLR -2 426 1 639 293 62 15 chr13 63210205 63210350 -38662819 - L1ME4a LINE L1 -500 5621 5484 1886 115 11 0 chr13 63210374 63210635 -38662534 - AluSq SINE Alu -44 269 6 22 0 0 0 chr13 63210883 63210905 -38662264 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 63211446 63211468 -38661701 + AT_rich Low_complexity Low_complexity 1 22 0 2001 117 7 17 chr13 63211721 63212020 -38661149 + AluSg SINE Alu 1 296 -14 263 347 8 8 chr13 63212450 63212571 -38660598 - MER94 DNA DNA 0 134 14 323 319 32 99 chr13 63212877 63213312 -38659857 + LTR67 LTR ERVL 110 515 -42 303 336 0 8 chr13 63213337 63213459 -38659710 - MER94 DNA DNA 0 134 14 2782 75 0 0 chr13 63215651 63216012 -38657157 + L1PA6 LINE L1 5790 6150 -4 21 57 0 0 chr13 63216286 63216321 -38656848 + AT_rich Low_complexity Low_complexity 1 35 0 616 179 149 31 chr13 63216532 63216727 -38656442 - MER106A DNA MER1_type -18 218 1 50 0 0 0 chr13 63217618 63217668 -38655501 + AT_rich Low_complexity Low_complexity 1 50 0 1459 232 20 71 chr13 63218364 63218873 -38654296 + LTR53 LTR ERVL 36 518 -1 28 48 0 0 chr13 63218979 63219021 -38654148 + AT_rich Low_complexity Low_complexity 1 42 0 260 337 76 0 chr13 63219583 63219675 -38653494 + L2 LINE L2 3150 3248 -24 2227 79 3 16 chr13 63220376 63220679 -38652490 - AluSg SINE Alu -7 303 5 1547 81 0 5 chr13 63221111 63221340 -38651829 - AluSg/x SINE Alu 0 314 87 1357 152 38 21 chr13 63221361 63221651 -38651518 + L1MA8 LINE L1 5986 6280 -11 349 78 0 0 chr13 63221887 63221938 -38651231 + Alu SINE Alu 250 300 0 3342 174 35 10 chr13 63222316 63223006 -38650163 + L1MA7 LINE L1 5584 6290 -1 539 229 8 23 chr13 63223217 63223348 -38649821 - FLAM_A SINE Alu -3 130 2 2044 138 22 8 chr13 63223789 63224144 -38649025 - MER47A DNA MER2_type 0 366 7 186 208 0 0 chr13 63224588 63224636 -38648533 + (CATATA)n Simple_repeat Simple_repeat 4 51 0 2860 7 0 0 chr13 63224914 63225223 -38647946 - AluYa5 SINE Alu -2 309 1 262 239 45 0 chr13 63225255 63225343 -38647826 + (TA)n Simple_repeat Simple_repeat 2 93 0 2290 115 66 25 chr13 63225680 63226044 -38647125 - LTR8 LTR ERV1 0 691 313 2300 96 28 6 chr13 63227937 63228259 -38644910 - LTR8 LTR ERV1 -362 329 1 1397 166 107 63 chr13 63228316 63228745 -38644424 - LTR7 LTR ERV1 -2 448 1 2442 95 45 13 chr13 63228745 63229125 -38644044 - HERVH LTR ERV1 0 7713 7322 1331 126 18 14 chr13 63229123 63229345 -38643824 - HERVH LTR ERV1 -1894 5819 5597 * 4205 143 22 1 chr13 63229342 63229991 -38643178 - HERVH LTR ERV1 -2564 5149 4488 3206 131 4 6 chr13 63229993 63230496 -38642673 - HERVH LTR ERV1 -3720 3993 3492 845 138 28 0 chr13 63230486 63230631 -38642538 - HERVH LTR ERV1 -4423 3290 3142 * 16331 95 12 11 chr13 63230627 63233426 -38639743 - HERVH LTR ERV1 -4726 2987 1 1390 157 122 70 chr13 63233428 63233854 -38639315 - LTR7 LTR ERV1 -2 448 1 364 231 138 0 chr13 63233901 63234031 -38639138 - L1M4 LINE L1 -2920 3226 3079 2307 193 93 54 chr13 63234130 63234798 -38638371 + LTR8A LTR ERV1 34 727 0 887 235 173 17 chr13 63235054 63235343 -38637826 + MER2 DNA MER2_type 1 334 -11 23 54 0 0 chr13 63235662 63235699 -38637470 + AT_rich Low_complexity Low_complexity 1 37 0 383 271 199 36 chr13 63236096 63236347 -38636822 - HAL1 LINE L1 -1220 1287 996 394 321 89 71 chr13 63236621 63237220 -38635949 + L2 LINE L2 2660 3309 -4 207 220 0 0 chr13 63237388 63237438 -38635731 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 1261 205 86 14 chr13 63238040 63238318 -38634851 + AluJb SINE Alu 1 298 -4 2118 156 22 0 chr13 63239573 63239977 -38633192 + L1P5 LINE L1 5276 5688 -468 505 293 7 14 chr13 63239980 63240127 -38633042 + FRAM SINE Alu 1 146 -30 2829 141 8 2 chr13 63240140 63240614 -38632555 + L1PB4 LINE L1 5679 6155 -1 308 257 107 57 chr13 63240738 63240878 -38632291 + MIR SINE MIR 112 258 -4 1121 239 118 3 chr13 63242840 63243146 -38630023 - L2 LINE L2 -458 2856 2516 1964 153 0 13 chr13 63243651 63243964 -38629205 + AluSx SINE Alu 1 309 -3 224 225 0 0 chr13 63243971 63244011 -38629158 + A-rich Low_complexity Low_complexity 4 43 0 6479 173 36 22 chr13 63244517 63245983 -38627186 + Ricksha DNA DNA 1713 3247 -7 4116 156 20 14 chr13 63246051 63246757 -38626412 + MER50 LTR ERV1 1 710 -24 2851 175 63 66 chr13 63247364 63248091 -38625078 - LTR8A LTR ERV1 -2 725 1 3910 78 16 40 chr13 63248223 63248791 -38624378 - MER41A LTR ERV1 0 554 1 1561 219 47 29 chr13 63249233 63249718 -38623451 + L1MCa LINE L1 997 1490 -4936 2201 113 3 0 chr13 63251492 63251793 -38621376 + AluSq SINE Alu 1 302 -11 544 250 40 0 chr13 63251984 63252132 -38621037 + MER58 DNA MER1_type 112 265 -76 3823 145 61 30 chr13 63252526 63253037 -38620132 + MER50 LTR ERV1 1 540 -194 2335 86 0 3 chr13 63253037 63253340 -38619829 - AluSp SINE Alu -11 302 1 3823 145 61 30 chr13 63253340 63253518 -38619651 + MER50 LTR ERV1 540 711 -23 367 360 92 34 chr13 63254008 63254422 -38618747 + L2 LINE L2 2813 3250 -22 278 253 126 0 chr13 63254734 63254821 -38618348 + MER67D LTR ERV1 385 482 -32 582 183 0 44 chr13 63254821 63254958 -38618211 + L1MA4 LINE L1 6161 6291 -9 1263 174 41 63 chr13 63254975 63255323 -38617846 - MER67C LTR ERV1 -243 271 1 32 57 0 0 chr13 63256651 63256704 -38616465 + AT_rich Low_complexity Low_complexity 1 53 0 1275 270 118 19 chr13 63257326 63257893 -38615276 + MLT1E2 LTR MaLR 1 623 -3 213 94 0 0 chr13 63258757 63258789 -38614380 + (CCCCCT)n Simple_repeat Simple_repeat 6 37 0 248 0 31 0 chr13 63259618 63259650 -38613519 + (TA)n Simple_repeat Simple_repeat 2 34 0 2340 71 7 0 chr13 63261107 63261416 -38611753 - AluY SINE Alu 0 311 1 359 275 11 0 chr13 63262725 63262816 -38610353 - Charlie8 DNA MER1_type -2204 213 122 506 254 37 58 chr13 63262816 63263005 -38610164 - MLT1J LTR MaLR 0 511 327 340 282 77 0 chr13 63263127 63263244 -38609925 - MLT1J LTR MaLR -377 134 9 500 333 83 30 chr13 63263547 63263886 -38609283 - L2 LINE L2 -829 2485 2129 239 233 0 14 chr13 63266581 63266654 -38606515 + CT-rich Low_complexity Low_complexity 1 72 0 225 324 138 33 chr13 63266988 63267198 -38605971 + L2 LINE L2 1909 2140 -1174 180 0 0 0 chr13 63267203 63267223 -38605946 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1950 81 9 81 chr13 63267323 63267644 -38605525 + AluSg SINE Alu 1 298 -12 186 43 0 0 chr13 63267783 63267806 -38605363 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 299 335 106 25 chr13 63268084 63268245 -38604924 + L2 LINE L2 2898 3071 -201 182 343 42 49 chr13 63268328 63268471 -38604698 + MIR SINE MIR 96 237 -25 35 54 0 0 chr13 63268504 63268560 -38604609 + AT_rich Low_complexity Low_complexity 1 56 0 198 337 35 0 chr13 63268578 63268664 -38604505 + L2 LINE L2 3183 3271 -1 1919 115 0 0 chr13 63270002 63270255 -38602914 - AluSq SINE Alu -60 253 1 192 265 24 36 chr13 63270560 63270643 -38602526 - MIR3 SINE MIR -7 201 120 198 245 0 0 chr13 63271908 63271957 -38601212 - L2 LINE L2 -1 3312 3264 28 29 0 0 chr13 63272245 63272280 -38600889 + AT_rich Low_complexity Low_complexity 1 35 0 29 47 0 0 chr13 63273809 63273852 -38599317 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr13 63274168 63274205 -38598964 + AT_rich Low_complexity Low_complexity 1 37 0 237 282 65 32 chr13 63274551 63274675 -38598494 + L1ME4a LINE L1 5566 5693 -428 25 75 0 0 chr13 63274738 63274791 -38598378 + AT_rich Low_complexity Low_complexity 1 53 0 201 211 0 0 chr13 63274822 63274874 -38598295 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 271 254 40 48 chr13 63274874 63275000 -38598169 + L1ME4a LINE L1 5947 6071 -50 1941 101 98 0 chr13 63275043 63275320 -38597849 + AluSp SINE Alu 1 304 -9 265 239 64 49 chr13 63275960 63276041 -38597128 - MER5A DNA MER1_type -16 173 81 457 139 0 0 chr13 63276437 63276561 -38596608 - AluJo SINE Alu 0 350 227 * 747 250 18 0 chr13 63276560 63276724 -38596445 - AluJo SINE Alu -143 169 3 761 267 92 0 chr13 63276788 63277028 -38596141 - ORSL DNA AcHobo 0 275 14 233 215 0 25 chr13 63277443 63277522 -38595647 + CT-rich Low_complexity Low_complexity 4 80 0 379 209 0 0 chr13 63277614 63277681 -38595488 - AluJ/monomer SINE Alu -1 301 235 23 0 0 0 chr13 63278053 63278076 -38595093 + AT_rich Low_complexity Low_complexity 1 23 0 232 366 52 22 chr13 63278268 63278318 -38594851 + L2 LINE L2 3172 3219 -94 2267 99 0 34 chr13 63278318 63278641 -38594528 - AluSq SINE Alu -1 312 1 232 366 52 22 chr13 63278641 63278724 -38594445 + L2 LINE L2 3219 3309 -4 4084 145 29 3 chr13 63278799 63279532 -38593637 + L1MA5 LINE L1 5547 6298 -2 180 306 0 41 chr13 63279835 63279884 -38593285 + L2 LINE L2 3155 3201 -71 1226 332 29 33 chr13 63279936 63280612 -38592557 - L2 LINE L2 -7 3306 2626 909 100 15 0 chr13 63280616 63280746 -38592423 - MSTB LTR MaLR -294 132 1 1792 309 86 11 chr13 63280746 63281491 -38591678 - L2 LINE L2 -804 2510 1710 2273 109 0 3 chr13 63281612 63281923 -38591246 + AluSg SINE Alu 1 310 0 24 32 0 0 chr13 63282397 63282428 -38590741 + AT_rich Low_complexity Low_complexity 1 31 0 595 214 28 21 chr13 63283645 63283790 -38589379 + AluJb SINE Alu 147 292 -20 1639 160 94 13 chr13 63283941 63284259 -38588910 - MER2 DNA MER2_type 0 344 1 313 268 0 0 chr13 63284379 63284450 -38588719 - MER81 DNA DNA -36 78 8 224 245 0 0 chr13 63285904 63285953 -38587216 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 229 343 35 28 chr13 63286547 63286690 -38586479 + MIR SINE MIR 34 177 -85 21 36 0 0 chr13 63286822 63286850 -38586319 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 63287135 63287156 -38586013 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 63288179 63288206 -38584963 + AT_rich Low_complexity Low_complexity 1 27 0 1434 51 0 0 chr13 63288507 63288682 -38584487 + L1PA8 LINE L1 5989 6163 -9 3015 149 16 2 chr13 63289085 63289583 -38583586 + MER84 LTR ERV1 3 507 0 244 280 30 40 chr13 63289993 63290093 -38583076 - MLT1J1 LTR MaLR -43 403 305 3801 106 33 2 chr13 63290093 63290641 -38582528 + MER61E LTR ERV1 1 565 -4 902 236 100 41 chr13 63290649 63291047 -38582122 + L1ME LINE L1 5234 5659 -503 221 378 53 7 chr13 63291225 63291376 -38581793 + MIR SINE MIR 49 206 -56 21 0 0 0 chr13 63291971 63291992 -38581177 + AT_rich Low_complexity Low_complexity 1 21 0 763 236 137 50 chr13 63292836 63293390 -38579779 - Charlie2 DNA MER1_type -402 2460 1859 501 288 86 52 chr13 63293424 63293657 -38579512 - Charlie2 DNA MER1_type -2540 322 82 596 294 26 26 chr13 63293990 63294218 -38578951 + MIR SINE MIR 34 261 -1 1865 158 3 0 chr13 63294551 63294849 -38578320 - AluSq SINE Alu -14 299 1 22 0 0 0 chr13 63295383 63295405 -38577764 + AT_rich Low_complexity Low_complexity 1 22 0 201 222 63 0 chr13 63295967 63296030 -38577139 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 21 0 0 0 chr13 63296083 63296104 -38577065 + AT_rich Low_complexity Low_complexity 1 21 0 184 408 8 25 chr13 63296417 63296537 -38576632 + L2 LINE L2 2644 2761 -553 357 206 0 110 chr13 63296605 63296741 -38576428 - MER112 DNA MER1_type -6 254 134 383 310 23 24 chr13 63297219 63297269 -38575900 - MLT1H1 LTR MaLR -335 214 165 481 61 0 184 chr13 63297269 63297367 -38575802 - MADE1 DNA Mariner 0 80 1 383 310 23 24 chr13 63297367 63297475 -38575694 - MLT1H1 LTR MaLR -384 165 5 258 311 90 29 chr13 63297528 63297805 -38575364 + MLT1J2 LTR MaLR 30 323 -127 232 289 26 0 chr13 63297989 63298065 -38575104 + MIR SINE MIR 138 215 -47 200 343 157 0 chr13 63298677 63298779 -38574390 + L2 LINE L2 3140 3257 -15 281 163 0 0 chr13 63299301 63299344 -38573825 + MER5B DNA MER1_type 1 43 -135 2313 265 51 21 chr13 63299349 63299960 -38573209 + L1MC1 LINE L1 3451 4087 -2059 2048 125 10 0 chr13 63299960 63300256 -38572913 - AluSq SINE Alu -14 299 1 2313 265 51 21 chr13 63300256 63300424 -38572745 + L1MC1 LINE L1 4087 4249 -1897 1419 84 0 0 chr13 63300529 63300707 -38572462 + AluSc SINE Alu 127 304 -5 3928 211 73 36 chr13 63300709 63301425 -38571744 + L1MC1 LINE L1 4322 5010 -1323 1975 112 19 44 chr13 63301425 63301746 -38571423 + AluSq SINE Alu 1 313 0 3928 211 73 36 chr13 63301746 63302849 -38570320 + L1MC1 LINE L1 5010 6200 -133 252 161 48 16 chr13 63303247 63303309 -38569860 + LTR8A LTR ERV1 323 386 -341 589 283 39 43 chr13 63303395 63303674 -38569495 + LTR8 LTR ERV1 393 670 -21 585 177 16 40 chr13 63303690 63303814 -38569355 + L1MC1 LINE L1 6198 6318 -15 316 250 72 13 chr13 63303821 63303977 -38569192 + MER5B DNA MER1_type 29 173 -5 2361 100 0 0 chr13 63304059 63304369 -38568800 - AluSg SINE Alu 0 310 1 1666 135 62 45 chr13 63305371 63305659 -38567510 - AluSx SINE Alu -6 306 14 29 0 0 0 chr13 63307339 63307368 -38565801 + AT_rich Low_complexity Low_complexity 1 29 0 24 96 0 0 chr13 63307681 63307754 -38565415 + AT_rich Low_complexity Low_complexity 1 73 0 2296 106 0 0 chr13 63308992 63309293 -38563876 - AluSq SINE Alu -12 301 1 18505 38 0 0 chr13 63309444 63311726 -38561443 - L1HS LINE L1 -2782 3364 1083 17304 21 0 0 chr13 63311721 63314533 -38558636 + L1HS LINE L1 3344 6155 0 * 313 307 151 38 chr13 63315233 63315445 -38557724 - MIR SINE MIR -4 258 23 28 0 0 0 chr13 63315929 63315957 -38557212 + AT_rich Low_complexity Low_complexity 1 28 0 269 234 52 0 chr13 63316122 63316199 -38556970 + L1M1 LINE L1 18 98 -7467 9741 178 26 30 chr13 63316206 63317096 -38556073 + L1M1 LINE L1 1805 2697 -4868 2097 122 0 0 chr13 63317096 63317383 -38555786 - AluSq SINE Alu -13 300 14 9741 178 26 30 chr13 63317383 63318081 -38555088 + L1M1 LINE L1 2697 3396 -4169 1971 150 6 6 chr13 63318081 63318394 -38554775 + AluSq SINE Alu 1 313 0 9741 178 26 30 chr13 63318394 63320579 -38552590 + L1M1 LINE L1 3396 5566 -1999 243 326 12 12 chr13 63320591 63320677 -38552492 + L2 LINE L2 3214 3299 -14 364 274 152 90 chr13 63320822 63321079 -38552090 - MLT1K LTR MaLR -123 465 184 2049 179 33 56 chr13 63321079 63321207 -38551962 - LTR54 LTR ERV1 -4 506 377 2093 53 0 4 chr13 63321207 63321494 -38551675 - AluY SINE Alu 0 321 36 2049 179 33 56 chr13 63321494 63321882 -38551287 - LTR54 LTR ERV1 -133 377 1 364 274 152 90 chr13 63321882 63321934 -38551235 - MLT1K LTR MaLR -404 184 137 2019 181 56 11 chr13 63322123 63322570 -38550599 - MER67C LTR ERV1 0 710 244 4724 68 27 0 chr13 63422595 63423226 -38449943 + L1PA6 LINE L1 5506 6153 -1 201 74 0 0 chr13 63423359 63423386 -38449783 + (T)n Simple_repeat Simple_repeat 1 27 0 6837 57 11 34 chr13 63423387 63424956 -38448213 - SVA Other Other -799 1385 10 765 152 41 0 chr13 63424957 63425102 -38448067 + L1MB5 LINE L1 6024 6174 0 856 152 0 8 chr13 63425114 63425303 -38447866 + FLAM_C SINE Alu 1 188 0 259 309 0 24 chr13 63425378 63425462 -38447707 - MIR SINE MIR -78 130 49 546 99 0 11 chr13 63425605 63425696 -38447473 - MER41A LTR ERV1 0 554 465 35346 53 1 4 chr13 63425796 63428610 -38444559 - L1P LINE L1 -1488 4658 1858 4763 40 9 0 chr13 63428610 63429189 -38443980 - L1PA4 LINE L1 -1 6154 5571 35346 53 1 4 chr13 63429189 63431043 -38442126 - L1P LINE L1 -4288 1858 1 2613 244 23 8 chr13 63431043 63431827 -38441342 + L1 LINE L1 2875 3670 -2476 5691 211 30 14 chr13 63431930 63433673 -38439496 + L1PB4 LINE L1 2565 4337 -2511 243 0 0 0 chr13 63433674 63433701 -38439468 + (T)n Simple_repeat Simple_repeat 1 27 0 7828 17 1 0 chr13 63434115 63435538 -38437631 - L1PA3 LINE L1 0 6155 4732 14011 36 1 0 chr13 63435538 63437320 -38435849 + L1P LINE L1 1240 3022 -3124 8224 170 15 17 chr13 63437315 63439855 -38433314 + L1PB4 LINE L1 4324 6857 -1 * 336 275 25 0 chr13 63439982 63440102 -38433067 + HAL1 LINE L1 1518 1640 -867 22 0 0 0 chr13 63440136 63440158 -38433011 + AT_rich Low_complexity Low_complexity 1 22 0 440 282 184 35 chr13 63440523 63440994 -38432175 + L1MEc LINE L1 2180 2683 -3532 225 208 52 0 chr13 63441004 63441081 -38432088 + (TA)n Simple_repeat Simple_repeat 1 81 0 232 312 18 24 chr13 63441091 63441261 -38431908 + L1MEc LINE L1 2732 2900 -3315 2377 37 7 7 chr13 63441266 63441560 -38431609 - AluY SINE Alu -15 296 3 611 314 61 8 chr13 63441745 63442006 -38431163 + MLT1I LTR MaLR 1 275 -134 1031 223 76 0 chr13 63443985 63444209 -38428960 + MIR SINE MIR 6 246 -16 658 122 14 27 chr13 63444474 63444621 -38428548 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 710 211 0 0 chr13 63444630 63444753 -38428416 - FLAM_A SINE Alu -9 124 2 273 329 138 9 chr13 63444778 63445009 -38428160 + L2 LINE L2 3041 3301 -12 192 77 0 0 chr13 63445052 63445078 -38428091 + (TTA)n Simple_repeat Simple_repeat 3 28 0 256 247 12 74 chr13 63445443 63445524 -38427645 - L2 LINE L2 0 3272 3197 303 198 154 0 chr13 63445826 63445917 -38427252 + MIR SINE MIR 82 186 -76 343 214 10 61 chr13 63447781 63447879 -38425290 + L2 LINE L2 3221 3313 0 387 344 99 79 chr13 63448296 63449322 -38423847 + L1M2 LINE L1 298 1344 -5505 183 42 0 0 chr13 63450127 63450151 -38423018 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr13 63451696 63451717 -38421452 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr13 63452622 63452648 -38420521 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 3887 14 0 0 chr13 63452657 63453100 -38420069 - L1PA2 LINE L1 0 6155 5713 258 364 64 0 chr13 63453460 63453570 -38419599 - MIR3 SINE MIR -45 163 47 360 206 82 10 chr13 63453631 63453728 -38419441 - MER112 DNA MER1_type -28 232 129 585 181 35 6 chr13 63454780 63455282 -38417887 + (TA)n Simple_repeat Simple_repeat 1 516 0 434 236 22 22 chr13 63455304 63455482 -38417687 + (TA)n Simple_repeat Simple_repeat 1 178 0 434 236 22 22 chr13 63455504 63455762 -38417407 + (TA)n Simple_repeat Simple_repeat 1 258 0 441 204 11 68 chr13 63455784 63455975 -38417194 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chr13 63456534 63456555 -38416614 + AT_rich Low_complexity Low_complexity 1 21 0 2227 289 140 43 chr13 63456881 63458235 -38414934 - HAL1 LINE L1 -6 2501 889 195 100 0 0 chr13 63458235 63458265 -38414904 + (TG)n Simple_repeat Simple_repeat 1 30 0 2227 289 140 43 chr13 63458265 63458912 -38414257 - HAL1 LINE L1 -1618 889 306 29589 94 22 15 chr13 63459364 63460656 -38412513 + L1PA7 LINE L1 734 2014 -4140 2001 128 0 3 chr13 63460656 63460962 -38412207 - AluSx SINE Alu 0 305 1 29589 94 22 15 chr13 63460962 63461291 -38411878 + L1PA7 LINE L1 2014 2339 -3815 183 42 0 0 chr13 63461291 63461315 -38411854 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29589 94 22 15 chr13 63461315 63465072 -38408097 + L1PA7 LINE L1 2339 6151 -3 1685 187 7 10 chr13 63465222 63465521 -38407648 + AluJo SINE Alu 3 300 -12 4976 237 75 30 chr13 63465565 63465794 -38407375 - L1ME1 LINE L1 -5 6230 6013 1799 128 0 0 chr13 63465794 63466036 -38407133 - AluSg SINE Alu -48 262 21 4976 237 75 30 chr13 63466036 63468372 -38404797 - L1ME1 LINE L1 -222 6013 3545 329 203 0 0 chr13 63468389 63468458 -38404711 - L1ME1 LINE L1 -4008 2388 2320 364 250 31 39 chr13 63468483 63468611 -38404558 - MLT1L LTR MaLR -339 276 150 550 263 105 12 chr13 63468614 63468785 -38404384 + MER5A DNA MER1_type 2 188 -1 215 154 26 0 chr13 63468904 63468943 -38404226 - MER5A DNA MER1_type -92 97 58 1234 204 104 3 chr13 63469060 63469368 -38403801 + MER58B DNA MER1_type 3 341 0 348 301 77 26 chr13 63471231 63471387 -38401782 + MER5A DNA MER1_type 21 184 -5 224 287 125 73 chr13 63471534 63471670 -38401499 - MIR SINE MIR -118 144 2 1807 131 65 44 chr13 63471933 63472300 -38400869 + THE1C LTR MaLR 1 375 0 1034 247 61 27 chr13 63472469 63472797 -38400372 - MER58B DNA MER1_type 0 341 3 28 61 0 0 chr13 63473241 63473290 -38399879 + AT_rich Low_complexity Low_complexity 1 49 0 1313 244 144 76 chr13 63473373 63473644 -38399525 - HAL1 LINE L1 -140 2367 2116 2057 129 3 3 chr13 63473644 63473938 -38399231 - AluSx SINE Alu -18 294 1 1313 244 144 76 chr13 63473938 63474823 -38398346 - HAL1 LINE L1 -391 2116 1132 444 220 0 22 chr13 63474864 63474955 -38398214 - L2 LINE L2 -22 3291 3203 368 321 123 32 chr13 63474955 63475232 -38397937 - HAL1 LINE L1 -1933 574 273 847 61 0 0 chr13 63475630 63475744 -38397425 - L1PA4 LINE L1 0 6155 6042 308 343 38 9 chr13 63475836 63475941 -38397228 + L2 LINE L2 3179 3286 -27 1620 180 39 3 chr13 63477324 63477607 -38395562 - AluJb SINE Alu -19 293 1 315 297 23 31 chr13 63478440 63478568 -38394601 + L2 LINE L2 3187 3313 0 21 0 0 0 chr13 63478994 63479015 -38394154 + AT_rich Low_complexity Low_complexity 1 21 0 233 383 61 35 chr13 63480525 63480786 -38392383 - L2 LINE L2 -19 3253 2986 189 74 0 0 chr13 63480792 63480819 -38392350 + (TG)n Simple_repeat Simple_repeat 2 28 0 320 309 167 24 chr13 63480948 63481158 -38392011 - L2 LINE L2 -363 2951 2712 346 275 72 48 chr13 63481850 63482017 -38391152 + HAL1 LINE L1 1136 1306 -1201 287 297 88 20 chr13 63482167 63482315 -38390854 + HAL1 LINE L1 1499 1656 -851 266 242 55 11 chr13 63482586 63482677 -38390492 + HAL1b LINE L1 746 840 -508 2109 121 7 0 chr13 63485630 63485919 -38387250 + AluSx SINE Alu 1 291 -21 207 0 0 0 chr13 63485922 63485945 -38387224 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 295 327 29 10 chr13 63486081 63486185 -38386984 - MIR SINE MIR -122 140 35 641 215 149 76 chr13 63486361 63486677 -38386492 + MER58B DNA MER1_type 3 341 0 276 318 178 45 chr13 63487167 63487430 -38385739 + L2 LINE L2 1458 1685 -1629 224 30 30 0 chr13 63487430 63487463 -38385706 + (CAA)n Simple_repeat Simple_repeat 2 35 0 276 318 178 45 chr13 63487463 63488328 -38384841 + L2 LINE L2 1685 2736 -578 317 177 16 0 chr13 63489098 63489160 -38384009 - L1MCa LINE L1 -4358 2068 2006 412 100 0 0 chr13 63489400 63489460 -38383709 - L1PA10 LINE L1 -108 6060 6001 * 963 42 8 0 chr13 63489459 63489579 -38383590 + L1PA10 LINE L1 5846 5966 -202 233 385 44 0 chr13 63490254 63490345 -38382824 - L2 LINE L2 -7 3306 3212 23 0 0 0 chr13 63492535 63492558 -38380611 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 63492979 63492999 -38380170 + (TG)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr13 63493122 63493151 -38380018 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 63494732 63494760 -38378409 + AT_rich Low_complexity Low_complexity 1 28 0 303 161 62 3 chr13 63494878 63494950 -38378219 - L1MB1 LINE L1 0 6168 6101 2725 237 51 34 chr13 63495541 63496312 -38376857 + L1MD2 LINE L1 5555 6338 -21 1788 142 25 54 chr13 63497811 63498127 -38375042 - AluSx SINE Alu -5 307 1 22 0 0 0 chr13 63498873 63498895 -38374274 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr13 63499290 63499316 -38373853 + (T)n Simple_repeat Simple_repeat 1 26 0 185 217 200 0 chr13 63499692 63499752 -38373417 + MIR3 SINE MIR 106 177 -31 21 57 0 0 chr13 63500007 63500042 -38373127 + AT_rich Low_complexity Low_complexity 1 35 0 459 307 186 31 chr13 63500788 63501176 -38371993 + L1MC4 LINE L1 7578 8025 -17 366 222 61 20 chr13 63502115 63502214 -38370955 + MER106B DNA MER1_type 53 155 -904 30 27 0 0 chr13 63502214 63502251 -38370918 + AT_rich Low_complexity Low_complexity 1 37 0 373 360 0 0 chr13 63502329 63502440 -38370729 + L2 LINE L2 3150 3260 -12 1955 226 83 38 chr13 63503369 63503899 -38369270 - MLT2B3 LTR ERVL 0 554 1 39 50 0 0 chr13 63504255 63504315 -38368854 + AT_rich Low_complexity Low_complexity 1 60 0 634 280 84 31 chr13 63505208 63505433 -38367736 - MIR SINE MIR -23 239 3 421 325 43 100 chr13 63505438 63505789 -38367380 + L2 LINE L2 2939 3269 -3 * 471 340 97 46 chr13 63505784 63506011 -38367158 + L3 LINE CR1 604 857 -720 1524 140 0 18 chr13 63506011 63506233 -38366936 + AluJb SINE Alu 84 301 -11 471 340 97 46 chr13 63506233 63506355 -38366814 + L3 LINE CR1 857 971 -606 1009 191 99 8 chr13 63506408 63506660 -38366509 + L1MC4a LINE L1 6820 7094 -714 189 353 129 0 chr13 63506905 63507021 -38366148 + MIR SINE MIR 16 146 -62 543 228 87 55 chr13 63507158 63507470 -38365699 - L1M4 LINE L1 -1545 4601 4280 1253 240 156 2 chr13 63507475 63507925 -38365244 + L1ME3 LINE L1 5635 6153 -9 813 171 47 24 chr13 63507957 63508127 -38365042 - L1MC2 LINE L1 0 6344 6171 7086 153 11 10 chr13 63508331 63510712 -38362457 - L1PB2 LINE L1 0 6151 3772 304 280 201 11 chr13 63512167 63512356 -38360813 + L2 LINE L2 2810 3034 -279 337 219 42 42 chr13 63512370 63512466 -38360703 + L2 LINE L2 3210 3305 -8 264 301 11 0 chr13 63512743 63512836 -38360333 - L2 LINE L2 -1471 1843 1750 322 257 21 62 chr13 63512917 63513061 -38360108 - L1ME4a LINE L1 -1 6120 5983 1505 180 68 24 chr13 63513297 63513591 -38359578 - AluJo SINE Alu -5 307 1 257 184 0 0 chr13 63515827 63515876 -38357293 - MIR SINE MIR -107 155 107 2736 137 12 9 chr13 63515879 63516301 -38356868 - MSTB LTR MaLR -2 424 2 8497 160 50 16 chr13 63516302 63517404 -38355765 - MSTB-int LTR MaLR 0 1651 588 216 0 0 0 chr13 63517404 63517428 -38355741 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1888 127 7 25 chr13 63517430 63517714 -38355455 - AluSx SINE Alu -33 279 1 8497 160 50 16 chr13 63517714 63518204 -38354965 - MSTB-int LTR MaLR -1063 588 1 1894 171 78 8 chr13 63518204 63518600 -38354569 - MSTB LTR MaLR 0 414 1 210 266 87 96 chr13 63518834 63519027 -38354142 - L2 LINE L2 -78 3235 3043 2099 203 74 40 chr13 63519027 63519619 -38353550 + LTR9 LTR ERV1 1 612 0 210 266 87 96 chr13 63519619 63519654 -38353515 - L2 LINE L2 -270 3043 3009 533 237 40 20 chr13 63519679 63519831 -38353338 - MER105 DNA DNA -6 198 44 403 252 78 0 chr13 63519831 63519934 -38353235 + MER5A DNA MER1_type 3 113 -76 1361 265 56 56 chr13 63519955 63520562 -38352607 - L2 LINE L2 -338 2976 2370 270 227 80 0 chr13 63520562 63520637 -38352532 - L2 LINE L2 -1111 2203 2123 986 236 157 60 chr13 63520784 63521263 -38351906 - MLT1F1 LTR MaLR 0 567 18 1485 259 170 29 chr13 63521294 63523122 -38350047 - L1ME LINE L1 -567 5668 3585 305 256 124 54 chr13 63523181 63523775 -38349394 - L1MEc LINE L1 -3594 2621 2041 479 316 78 77 chr13 63524078 63524525 -38348644 - L2 LINE L2 -1 3312 2861 845 249 6 0 chr13 63524525 63524702 -38348467 - MER45A DNA AcHobo 0 178 1 479 316 78 77 chr13 63524702 63524813 -38348356 - L2 LINE L2 -452 2861 2752 743 262 33 9 chr13 63524823 63525033 -38348136 - MIR SINE MIR 0 262 48 239 278 120 37 chr13 63525037 63525145 -38348024 - L2 LINE L2 -583 2731 2615 22 0 0 0 chr13 63525432 63525454 -38347715 + AT_rich Low_complexity Low_complexity 1 22 0 1609 199 0 17 chr13 63525470 63525762 -38347407 - AluJo SINE Alu -25 287 1 1524 93 62 16 chr13 63525770 63526027 -38347142 - L1MA5A LINE L1 -3 6294 6026 577 281 107 0 chr13 63526990 63527214 -38345955 - LTR16C LTR ERVL -4 487 240 585 242 180 0 chr13 63527360 63527538 -38345631 + MER58C DNA MER1_type 5 214 -1 364 308 70 51 chr13 63527553 63527926 -38345243 - MLT1I LTR MaLR -29 380 1 25 31 0 0 chr13 63528363 63528395 -38344774 + AT_rich Low_complexity Low_complexity 1 32 0 1318 257 84 55 chr13 63528773 63529112 -38344057 - MLT1E3 LTR MaLR 0 624 297 2359 41 41 0 chr13 63529112 63529404 -38343765 - AluY SINE Alu -7 304 1 1318 257 84 55 chr13 63529404 63529469 -38343700 - MLT1E3 LTR MaLR -327 297 235 2218 85 7 10 chr13 63529469 63529805 -38343364 + AluSc SINE Alu 1 335 0 1318 257 84 55 chr13 63529805 63530003 -38343166 - MLT1E3 LTR MaLR -389 235 1 225 136 11 136 chr13 63530204 63530292 -38342877 + MER112 DNA MER1_type 139 215 -45 21 0 0 0 chr13 63530476 63530497 -38342672 + AT_rich Low_complexity Low_complexity 1 21 0 2279 92 3 3 chr13 63531462 63531756 -38341413 - AluSq SINE Alu -19 294 1 218 331 184 14 chr13 63531868 63532164 -38341005 + L2 LINE L2 2914 3271 -1 240 111 0 0 chr13 63532693 63532729 -38340440 + (T)n Simple_repeat Simple_repeat 1 36 0 5116 153 20 8 chr13 63533440 63534464 -38338705 + L1PA16 LINE L1 5129 6164 -2 25 51 0 0 chr13 63534465 63534504 -38338665 + AT_rich Low_complexity Low_complexity 1 39 0 352 344 76 42 chr13 63534629 63534971 -38338198 + L1MC4 LINE L1 5716 6065 -1743 1160 160 24 38 chr13 63536344 63536631 -38336538 + L1MA4 LINE L1 6014 6296 -4 968 202 101 0 chr13 63536774 63536972 -38336197 + MER58A DNA MER1_type 7 224 0 792 255 159 57 chr13 63538535 63538623 -38334546 + L2 LINE L2 2633 2711 -602 1468 163 18 75 chr13 63538623 63538954 -38334215 - AluJo SINE Alu 0 312 1 792 255 159 57 chr13 63538954 63539471 -38333698 + L2 LINE L2 2711 3311 -2 878 292 69 44 chr13 63539970 63540583 -38332586 - MLT2F LTR ERVL -2 661 3 207 315 84 49 chr13 63540660 63540803 -38332366 + MIR3 SINE MIR 33 180 -28 289 154 62 15 chr13 63540959 63541024 -38332145 + L1MC5 LINE L1 7711 7778 -183 17109 185 10 50 chr13 63541028 63543179 -38329990 + L1PA16 LINE L1 1 2236 -4613 2118 117 21 0 chr13 63543179 63543469 -38329700 + AluSx SINE Alu 1 296 -16 17109 185 10 50 chr13 63543469 63544215 -38328954 + L1PA16 LINE L1 2236 3010 -3839 252 59 0 0 chr13 63544215 63544249 -38328920 + (CAAA)n Simple_repeat Simple_repeat 4 37 0 17109 185 10 50 chr13 63544249 63546858 -38326311 + L1PA16 LINE L1 3010 5342 -1507 331 132 29 0 chr13 63546892 63546960 -38326209 + (TA)n Simple_repeat Simple_repeat 1 70 0 242 29 29 0 chr13 63546959 63546994 -38326175 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 5540 121 14 8 chr13 63546994 63548489 -38324680 + L1PA16 LINE L1 5369 6869 0 235 297 0 11 chr13 63548537 63548628 -38324541 + CT-rich Low_complexity Low_complexity 2 91 0 475 250 94 6 chr13 63548783 63548963 -38324206 - L1ME2 LINE L1 -136 6028 5833 254 281 198 0 chr13 63548961 63549057 -38324112 - L1ME2 LINE L1 -558 5606 5492 * 1072 252 20 63 chr13 63549059 63549408 -38323761 + MLT1G LTR MaLR 192 525 -65 394 270 159 5 chr13 63549422 63549611 -38323558 - HAL1 LINE L1 -1938 569 352 424 310 40 80 chr13 63549677 63549903 -38323266 - HAL1 LINE L1 -2290 217 1 22 0 0 0 chr13 63552289 63552311 -38320858 + AT_rich Low_complexity Low_complexity 1 22 0 308 358 67 6 chr13 63552507 63552686 -38320483 + L2 LINE L2 2706 2895 -419 2123 288 139 26 chr13 63552686 63552945 -38320224 - L2 LINE L2 0 3313 3085 1814 148 7 11 chr13 63552945 63553228 -38319941 + AluSx SINE Alu 1 282 -30 2123 288 139 26 chr13 63553228 63554267 -38318902 - L2 LINE L2 -228 3085 1855 453 56 84 0 chr13 63554322 63554393 -38318776 + L1PA13 LINE L1 6082 6158 -5 274 392 82 21 chr13 63554580 63554774 -38318395 + MIR SINE MIR 1 206 -56 342 115 0 39 chr13 63555047 63555125 -38318044 + (TC)n Simple_repeat Simple_repeat 2 76 0 5714 148 25 5 chr13 63555132 63555778 -38317391 - L1PB2 LINE L1 -3 6148 5517 195 69 0 0 chr13 63555778 63555807 -38317362 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5714 148 25 5 chr13 63555807 63556670 -38316499 - L1PB2 LINE L1 -634 5517 4608 209 277 0 15 chr13 63556672 63556737 -38316432 + CT-rich Low_complexity Low_complexity 3 66 0 524 307 157 62 chr13 63559944 63560377 -38312792 + L2 LINE L2 2840 3313 0 198 328 147 17 chr13 63560375 63560491 -38312678 - MIR SINE MIR -61 201 71 * 405 0 0 0 chr13 63561304 63561349 -38311820 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr13 63561348 63561375 -38311794 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 669 315 51 0 chr13 63562396 63562593 -38310576 + MIR SINE MIR 5 211 -51 322 286 92 15 chr13 63563775 63563981 -38309188 + MLT1J2 LTR MaLR 13 234 -216 2007 92 0 61 chr13 63564006 63564301 -38308868 + AluSg SINE Alu 1 277 -33 207 0 0 0 chr13 63564304 63564327 -38308842 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 233 194 0 65 chr13 63564405 63564467 -38308702 + MLT1I LTR MaLR 344 401 -8 257 279 23 47 chr13 63564680 63564766 -38308403 - L3 LINE CR1 -2 1575 1492 323 94 0 38 chr13 63565062 63565115 -38308054 + Tigger1 DNA MER2_type 671 721 -1697 7753 117 15 43 chr13 63565115 63565544 -38307625 + Tigger1 DNA MER2_type 1093 1532 -886 216 97 0 0 chr13 63565544 63565575 -38307594 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 7753 117 15 43 chr13 63565575 63566509 -38306660 + Tigger1 DNA MER2_type 1532 2418 0 548 153 17 51 chr13 63566564 63566682 -38306487 + MLT1D LTR MaLR 387 500 -5 1366 207 0 0 chr13 63567452 63567703 -38305466 - L1PB4 LINE L1 -2 6154 5904 337 345 52 85 chr13 63568879 63569186 -38303983 - L2 LINE L2 -8 3264 2968 561 146 61 4 chr13 63569193 63569327 -38303842 - L1PA12 LINE L1 -85 6069 5934 331 252 69 23 chr13 63569720 63569851 -38303318 - MIR SINE MIR -11 251 115 537 227 22 65 chr13 63569867 63570052 -38303117 + MER5B DNA MER1_type 2 178 0 21 36 0 0 chr13 63570191 63570219 -38302950 + AT_rich Low_complexity Low_complexity 1 28 0 582 283 158 20 chr13 63571312 63571693 -38301476 + LTR33 LTR ERVL 42 476 -47 2089 120 0 17 chr13 63575123 63575422 -38297747 + AluSq SINE Alu 1 294 -19 518 294 51 54 chr13 63575707 63576003 -38297166 + L1M4 LINE L1 3927 4221 -1925 378 110 7 227 chr13 63576072 63576226 -38296943 + L1MC5 LINE L1 6861 6980 -981 1841 239 40 38 chr13 63576249 63576856 -38296313 + L1MC5 LINE L1 6968 7575 -386 508 316 60 9 chr13 63576997 63577212 -38295957 - LTR67 LTR ERVL -329 228 3 32 43 0 0 chr13 63577488 63577534 -38295635 + AT_rich Low_complexity Low_complexity 1 46 0 244 290 105 70 chr13 63577617 63577693 -38295476 - HAL1 LINE L1 -135 2372 2300 1220 219 49 29 chr13 63577693 63577999 -38295170 - AluJo SINE Alu 0 312 1 244 290 105 70 chr13 63577999 63578436 -38294733 - HAL1 LINE L1 -207 2300 1841 436 287 16 8 chr13 63578550 63578679 -38294490 - L2 LINE L2 -1 3312 3183 2329 93 0 13 chr13 63580317 63580627 -38292542 - AluY SINE Alu -5 306 1 638 171 0 8 chr13 63581025 63581154 -38292015 + CT-rich Low_complexity Low_complexity 3 130 0 232 391 0 9 chr13 63581220 63581335 -38291834 - MIR SINE MIR -118 144 31 262 275 5 130 chr13 63581720 63581799 -38291370 + MLT1J LTR MaLR 318 359 -152 2250 114 0 3 chr13 63581799 63582106 -38291063 - AluSx SINE Alu -6 306 1 262 275 5 130 chr13 63582106 63582226 -38290943 + MLT1J LTR MaLR 359 492 -19 251 312 203 0 chr13 63582465 63582603 -38290566 + L3 LINE CR1 1409 1574 -3 184 229 129 29 chr13 63585337 63585407 -38287762 + L2 LINE L2 3196 3272 0 712 285 44 56 chr13 63587086 63587496 -38285673 - MLT1J1 LTR MaLR -2 444 64 2057 120 3 3 chr13 63588360 63588644 -38284525 - AluSx SINE Alu -20 292 9 436 333 98 4 chr13 63588946 63589180 -38283989 - MIR SINE MIR 0 262 7 199 214 0 0 chr13 63590050 63590092 -38283077 - L2 LINE L2 0 3313 3272 2547 72 37 6 chr13 63591000 63591349 -38281820 + THE1B LTR MaLR 1 360 -4 4251 165 25 53 chr13 63591462 63591951 -38281218 - L1MB1 LINE L1 -52 6116 5653 4098 62 0 0 chr13 63591951 63592466 -38280703 + L1PA7 LINE L1 5629 6143 -11 4251 165 25 53 chr13 63592466 63592920 -38280249 - L1MB1 LINE L1 -515 5653 5188 1652 158 67 25 chr13 63593148 63593508 -38279661 + THE1C LTR MaLR 1 375 0 410 295 23 23 chr13 63593515 63593644 -38279525 + MIR SINE MIR 98 226 -36 355 307 107 0 chr13 63593744 63593855 -38279314 + MIR SINE MIR 26 158 -104 2170 99 3 14 chr13 63593855 63594148 -38279021 + AluSc SINE Alu 1 290 -19 355 307 107 0 chr13 63594148 63594186 -38278983 + MIR SINE MIR 158 191 -71 253 325 0 25 chr13 63594471 63594551 -38278618 + MLT1K LTR MaLR 168 245 -343 239 270 58 75 chr13 63594896 63595070 -38278099 - L1ME LINE L1 -227 5894 5724 283 316 35 9 chr13 63595099 63595213 -38277956 - L1ME LINE L1 -521 5600 5484 24 0 0 0 chr13 63595545 63595569 -38277600 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 63595681 63595703 -38277466 + AT_rich Low_complexity Low_complexity 1 22 0 267 259 21 98 chr13 63595817 63595960 -38277209 - MIR SINE MIR 0 262 131 961 184 75 62 chr13 63596213 63596533 -38276636 - MER33 DNA MER1_type 0 324 1 1386 135 72 60 chr13 63597236 63597569 -38275600 + MER44D DNA MER2_type 1 607 -2 293 209 45 0 chr13 63597910 63597977 -38275192 - MER116 DNA Mariner 0 80 11 343 358 66 0 chr13 63598112 63598249 -38274920 + MIR SINE MIR 9 154 -108 388 253 0 0 chr13 63598584 63598675 -38274494 + MIR SINE MIR 164 254 -8 4859 214 66 42 chr13 63598675 63598789 -38274380 - L1MB7 LINE L1 0 6184 6074 2214 81 3 7 chr13 63598789 63599133 -38274036 + AluY SINE Alu 1 343 0 4859 214 66 42 chr13 63599133 63600085 -38273084 - L1MB7 LINE L1 -110 6074 5147 2210 112 0 0 chr13 63600085 63600379 -38272790 + AluSg SINE Alu 1 294 -16 4859 214 66 42 chr13 63600379 63600635 -38272534 - L1MB7 LINE L1 -1037 5147 4899 2309 108 3 3 chr13 63600635 63600941 -38272228 - AluY SINE Alu -5 306 1 4859 214 66 42 chr13 63600941 63601949 -38271220 - L1MB7 LINE L1 -1285 4899 3786 23 0 0 0 chr13 63601962 63601985 -38271184 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr13 63602274 63602296 -38270873 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 1906 154 73 14 chr13 63602594 63602938 -38270231 + MSTA LTR MaLR 1 364 -64 1427 73 0 0 chr13 63602938 63603117 -38270052 - AluY SINE Alu -1 310 132 207 0 0 0 chr13 63603117 63603140 -38270029 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2329 56 0 14 chr13 63603140 63603428 -38269741 - AluY SINE Alu -27 284 1 441 134 0 0 chr13 63603429 63603496 -38269673 + MSTA LTR MaLR 362 428 0 207 0 0 0 chr13 63604343 63604366 -38268803 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2065 164 231 58 chr13 63605277 63605880 -38267289 - MER39 LTR ERV1 0 707 1 1503 184 9 51 chr13 63606571 63606887 -38266282 - AluJo SINE Alu -9 303 1 1071 87 7 0 chr13 63607783 63607933 -38265236 - L1PA13 LINE L1 -8 6155 6005 204 67 0 0 chr13 63607956 63607986 -38265183 + (T)n Simple_repeat Simple_repeat 1 30 0 231 304 13 13 chr13 63608463 63608542 -38264627 + ORSL DNA AcHobo 197 275 0 23 0 0 0 chr13 63609392 63609415 -38263754 + AT_rich Low_complexity Low_complexity 1 23 0 2644 143 9 14 chr13 63610231 63610666 -38262503 + MER57B LTR ERV1 1 433 -1 256 323 11 11 chr13 63610908 63611001 -38262168 + LTR67 LTR ERVL 460 552 -5 214 250 0 67 chr13 63611006 63611110 -38262059 + CT-rich Low_complexity Low_complexity 5 101 0 1096 226 83 17 chr13 63612995 63613122 -38260047 + LTR37A LTR ERV1 39 156 -270 2249 91 3 10 chr13 63613122 63613420 -38259749 - AluSq SINE Alu -17 296 1 1096 226 83 17 chr13 63613420 63613654 -38259515 + LTR37A LTR ERV1 156 424 -2 599 246 52 122 chr13 63614900 63615455 -38257714 - MER110 LTR ERV1 -11 480 3 180 0 0 0 chr13 63615822 63615842 -38257327 + (T)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr13 63616343 63616366 -38256803 + AT_rich Low_complexity Low_complexity 1 23 0 196 304 0 0 chr13 63617261 63617307 -38255862 - L2 LINE L2 -5 3308 3263 6598 210 87 29 chr13 63617776 63619568 -38253601 + L1M4b LINE L1 12 1906 -4949 1935 177 0 0 chr13 63620050 63620355 -38252814 + AluJb SINE Alu 1 305 -7 1397 151 28 58 chr13 63620366 63620529 -38252640 - L1MD1 LINE L1 -13 6229 6077 1452 214 3 13 chr13 63620529 63620832 -38252337 + AluJo SINE Alu 1 300 -12 1397 151 28 58 chr13 63620832 63620959 -38252210 - L1MD1 LINE L1 -165 6077 5948 779 269 17 0 chr13 63621768 63621943 -38251226 - MER5B DNA MER1_type 0 178 1 328 294 125 19 chr13 63622100 63622260 -38250909 - MER5B DNA MER1_type -1 177 1 667 265 6 0 chr13 63623431 63623597 -38249572 + MIR SINE MIR 94 260 -2 212 170 19 0 chr13 63623608 63623661 -38249508 + (CAT)n Simple_repeat Simple_repeat 2 55 0 25 51 0 0 chr13 63623771 63623810 -38249359 + AT_rich Low_complexity Low_complexity 1 39 0 201 74 0 0 chr13 63624388 63624415 -38248754 + (TG)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr13 63625646 63625667 -38247502 + AT_rich Low_complexity Low_complexity 1 21 0 249 33 0 0 chr13 63626417 63626447 -38246722 + (TG)n Simple_repeat Simple_repeat 1 30 0 287 196 18 0 chr13 63626962 63627018 -38246151 + LTR37A LTR ERV1 128 184 -242 23 0 0 0 chr13 63627869 63627892 -38245277 + AT_rich Low_complexity Low_complexity 1 23 0 503 212 119 66 chr13 63628418 63628569 -38244600 - MER63A DNA MER1_type 0 210 52 838 216 112 127 chr13 63628667 63629196 -38243973 - L2 LINE L2 -423 2891 2371 342 228 20 0 chr13 63629219 63629332 -38243837 - L1M4 LINE L1 -1083 5063 4945 918 290 66 52 chr13 63629514 63630231 -38242938 - L1M4 LINE L1 -1181 4965 4239 1762 186 134 20 chr13 63630447 63630711 -38242458 - MER74C LTR ERVL 0 460 133 2092 137 61 0 chr13 63630711 63631054 -38242115 + THE1B LTR MaLR 1 364 0 1762 186 134 20 chr13 63631054 63631192 -38241977 - MER74C LTR ERVL -327 133 12 2489 230 66 13 chr13 63631582 63632277 -38240892 - L1MB7 LINE L1 -2 6182 5451 235 318 146 18 chr13 63632764 63632874 -38240295 + MIR SINE MIR 30 153 -55 34 0 0 0 chr13 63633139 63633173 -38239996 + AT_rich Low_complexity Low_complexity 1 34 0 7744 20 0 0 chr13 63633173 63634400 -38238769 - L1PA3 LINE L1 -3 6152 4925 22 0 0 0 chr13 63634505 63634527 -38238642 + AT_rich Low_complexity Low_complexity 1 22 0 2326 98 3 0 chr13 63634595 63634902 -38238267 - AluY SINE Alu -3 308 1 2561 141 14 21 chr13 63635985 63636418 -38236751 - Tigger2a DNA MER2_type -1 433 4 244 317 10 29 chr13 63636869 63636973 -38236196 + MIR SINE MIR 20 121 -87 225 250 0 0 chr13 63636969 63637017 -38236152 + L2 LINE L2 3266 3313 0 * 875 290 21 31 chr13 63637015 63637301 -38235868 - L2 LINE L2 -4 3309 3027 199 244 320 0 chr13 63639177 63639255 -38233914 - L2 LINE L2 -1 3271 3169 1497 307 78 75 chr13 63639447 63640688 -38232481 - L2 LINE L2 -234 3038 1806 24 53 0 0 chr13 63641205 63641243 -38231926 + AT_rich Low_complexity Low_complexity 1 38 0 227 301 25 61 chr13 63641373 63641536 -38231633 + L2 LINE L2 1518 1674 -1640 469 351 119 16 chr13 63641667 63642052 -38231117 + L2 LINE L2 2382 2806 -508 396 0 0 0 chr13 63642073 63642117 -38231052 + (CA)n Simple_repeat Simple_repeat 2 45 0 412 284 37 49 chr13 63642126 63642288 -38230881 + L2 LINE L2 2909 3068 -204 27 49 0 0 chr13 63643120 63643161 -38230008 + AT_rich Low_complexity Low_complexity 1 41 0 244 125 18 36 chr13 63643292 63643348 -38229821 - HAL1 LINE L1 -159 2348 2294 35 0 0 0 chr13 63643428 63643463 -38229706 + AT_rich Low_complexity Low_complexity 1 35 0 207 232 61 30 chr13 63643481 63643645 -38229524 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 257 136 17 34 chr13 63643844 63643903 -38229266 - L1ME3A LINE L1 -214 5956 5899 939 205 34 5 chr13 63643906 63644111 -38229058 + MER20 DNA MER1_type 6 216 -3 415 238 95 27 chr13 63644111 63644342 -38228827 - L1ME3A LINE L1 -367 5811 5559 * 456 264 176 45 chr13 63644339 63644828 -38228341 - HAL1 LINE L1 -226 2281 1729 379 162 7 103 chr13 63644867 63645003 -38228166 - HAL1 LINE L1 -1374 1133 1011 499 284 143 80 chr13 63645151 63645817 -38227352 - HAL1 LINE L1 -1792 715 8 271 133 17 17 chr13 63645847 63645907 -38227262 + (TA)n Simple_repeat Simple_repeat 1 60 0 266 106 21 0 chr13 63645953 63646000 -38227169 + (CA)n Simple_repeat Simple_repeat 1 48 0 969 195 56 14 chr13 63646476 63646691 -38226478 - MER58A DNA MER1_type 0 224 1 500 317 38 16 chr13 63647006 63647189 -38225980 - MER5A DNA MER1_type -1 188 2 245 371 0 0 chr13 63647265 63647327 -38225842 - L2 LINE L2 -89 3183 3122 189 271 94 0 chr13 63647694 63647779 -38225390 + L2 LINE L2 3159 3251 -62 250 281 90 0 chr13 63647840 63647929 -38225240 - MIR SINE MIR -100 162 66 34 42 0 0 chr13 63649887 63649935 -38223234 + AT_rich Low_complexity Low_complexity 1 48 0 255 148 0 213 chr13 63651105 63651227 -38221942 - L1PA16 LINE L1 -2 6164 6069 24 0 0 0 chr13 63652647 63652671 -38220498 + AT_rich Low_complexity Low_complexity 1 24 0 216 231 96 0 chr13 63652736 63652788 -38220381 + MIR3 SINE MIR 135 191 -17 24 53 0 0 chr13 63654529 63654567 -38218602 + AT_rich Low_complexity Low_complexity 1 38 0 2514 143 22 68 chr13 63655951 63656498 -38216671 + LTR10A LTR ERV1 25 546 -63 835 293 107 25 chr13 63657769 63658134 -38215035 + L2 LINE L2 2897 3291 -22 213 181 14 28 chr13 63658214 63658286 -38214883 + (TA)n Simple_repeat Simple_repeat 1 71 0 288 289 130 47 chr13 63658827 63659080 -38214089 - Charlie8 DNA MER1_type -2143 274 1 963 278 208 25 chr13 63659114 63659882 -38213287 - L2 LINE L2 0 3313 2374 2018 219 82 6 chr13 63660015 63660491 -38212678 + MLT1F1 LTR MaLR 33 544 -23 227 292 108 0 chr13 63660536 63660601 -38212568 - MIR SINE MIR -184 78 7 1623 184 134 68 chr13 63660741 63661226 -38211943 + MLT2B1 LTR ERVL 1 517 -3 207 0 0 0 chr13 63661660 63661683 -38211486 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 63662065 63662086 -38211083 + AT_rich Low_complexity Low_complexity 1 21 0 243 190 86 17 chr13 63663042 63663100 -38210069 + MER91C DNA MER1_type 49 110 -30 396 261 45 19 chr13 63666452 63666609 -38206560 + L1MC/D LINE L1 5574 5734 -2074 473 365 0 17 chr13 63667811 63667989 -38205180 + MIR SINE MIR 22 196 -66 207 0 0 0 chr13 63669164 63669187 -38203982 + (CTG)n Simple_repeat Simple_repeat 1 23 0 193 297 31 0 chr13 63669294 63669358 -38203811 - MIR SINE MIR -62 146 81 228 320 238 0 chr13 63669498 63669679 -38203490 + MIR SINE MIR 23 246 -16 413 238 245 20 chr13 63669809 63669956 -38203213 - MER5A DNA MER1_type 0 189 10 983 186 6 11 chr13 63670007 63670184 -38202985 - MER5A DNA MER1_type -1 188 13 22 0 0 0 chr13 63671624 63671646 -38201523 + AT_rich Low_complexity Low_complexity 1 22 0 232 323 0 0 chr13 63672838 63672900 -38200269 - MIR SINE MIR -126 82 21 21 57 0 0 chr13 63673542 63673577 -38199592 + AT_rich Low_complexity Low_complexity 1 35 0 245 333 101 10 chr13 63673768 63673867 -38199302 - MIR SINE MIR -108 154 47 198 292 169 0 chr13 63674076 63674141 -38199028 + MIR3 SINE MIR 114 189 -19 1951 165 12 27 chr13 63675838 63675991 -38197178 - L1MB2 LINE L1 -3 6168 6014 2203 128 39 22 chr13 63675991 63676349 -38196820 + THE1B LTR MaLR 1 364 0 1951 165 12 27 chr13 63676349 63676596 -38196573 - L1MB2 LINE L1 -157 6014 5774 378 167 155 0 chr13 63676598 63676682 -38196487 - L1MB2 LINE L1 -474 5697 5601 426 224 10 0 chr13 63676686 63676784 -38196385 + L1M3 LINE L1 5677 5775 -396 * 4721 98 0 1 chr13 63676783 63677453 -38195716 + THE1-int LTR MaLR 739 1407 -173 3809 80 17 27 chr13 63677469 63678070 -38195099 - THE1A-int LTR MaLR -985 595 1 2261 122 11 8 chr13 63678070 63678424 -38194745 - THE1A LTR MaLR 0 355 1 285 51 0 0 chr13 63679500 63679539 -38193630 + (A)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr13 63679797 63679819 -38193350 + AT_rich Low_complexity Low_complexity 1 22 0 366 268 114 48 chr13 63680167 63680395 -38192774 - MIR SINE MIR -12 250 8 3022 58 93 0 chr13 63680978 63681388 -38191781 - LTR7 LTR ERV1 -2 448 1 2199 109 48 13 chr13 63681388 63681765 -38191404 - HERVH LTR ERV1 0 7713 7324 1035 136 23 0 chr13 63681765 63681941 -38191228 - HERVH LTR ERV1 -1894 5819 5640 * 4003 127 3 5 chr13 63681939 63682569 -38190600 - HERVH LTR ERV1 -2597 5116 4488 5338 110 11 2 chr13 63682571 63683418 -38189751 - HERVH LTR ERV1 -3720 3993 3140 * 9253 136 29 29 chr13 63683397 63686732 -38186437 - HERVH LTR ERV1 -3437 3217 1 2772 75 120 0 chr13 63686734 63687134 -38186035 - LTR7 LTR ERV1 -2 448 1 279 357 45 0 chr13 63687144 63687298 -38185871 + MIR SINE MIR 52 212 -50 2177 123 0 0 chr13 63687470 63687794 -38185375 + AluSc SINE Alu 1 309 0 235 246 115 0 chr13 63687900 63687961 -38185208 - L2 LINE L2 -16 3297 3230 213 347 32 11 chr13 63688092 63688187 -38184982 - L2 LINE L2 -230 3042 2946 360 0 0 0 chr13 63688455 63688495 -38184674 + (TG)n Simple_repeat Simple_repeat 2 41 0 346 344 7 13 chr13 63688742 63688893 -38184276 - L2 LINE L2 -943 2371 2222 206 283 0 0 chr13 63689510 63689556 -38183613 + L2 LINE L2 3265 3310 -3 613 215 132 39 chr13 63689734 63689939 -38183230 + LTR35 LTR ERV1 334 557 -61 439 314 144 13 chr13 63690013 63690242 -38182927 - MIR SINE MIR 0 262 4 26 30 0 0 chr13 63690453 63690486 -38182683 + AT_rich Low_complexity Low_complexity 1 33 0 203 308 142 17 chr13 63692439 63692559 -38180610 - L2 LINE L2 -264 3008 2874 580 196 42 84 chr13 63693120 63693334 -38179835 + L1MCa LINE L1 6 192 -5853 * 1215 250 13 45 chr13 63693332 63693728 -38179441 + L1MCa LINE L1 672 1054 -4991 985 113 0 0 chr13 63694945 63695078 -38178091 - AluSp SINE Alu -180 133 1 207 0 0 0 chr13 63695130 63695153 -38178016 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1551 178 55 0 chr13 63695162 63695415 -38177754 - 7SLRNA srpRNA srpRNA -53 267 1 903 123 0 0 chr13 63695424 63695554 -38177615 - FLAM_A SINE Alu 0 133 4 203 266 21 75 chr13 63696207 63696301 -38176868 - L2 LINE L2 -1880 1434 1346 426 333 118 16 chr13 63696905 63697211 -38175958 + LTR16B LTR ERVL 96 432 -32 220 363 77 42 chr13 63697233 63697401 -38175768 - L2 LINE L2 -177 3095 2922 10110 118 18 22 chr13 63697436 63699090 -38174079 - MER41C-int LTR ERV1 -5558 2198 552 3235 131 57 2 chr13 63699196 63699740 -38173429 - MER41C-int LTR ERV1 -7180 576 3 3225 126 82 6 chr13 63699825 63700340 -38172829 - MER41C LTR ERV1 0 554 1 226 197 15 15 chr13 63701089 63701155 -38172014 + (TA)n Simple_repeat Simple_repeat 2 67 0 5179 191 37 19 chr13 63701879 63702232 -38170937 - L1MB1 LINE L1 -7 6182 5837 2078 111 17 27 chr13 63702232 63702578 -38170591 - AluSx SINE Alu 0 312 1 5179 191 37 19 chr13 63702578 63703617 -38169552 - L1MB1 LINE L1 -352 5837 4738 459 0 0 0 chr13 63703617 63703668 -38169501 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 5179 191 37 19 chr13 63703668 63704339 -38168830 - L1MB1 LINE L1 -1451 4738 4081 1763 207 98 21 chr13 63704339 63704808 -38168361 - MLT1D LTR MaLR 0 505 1 350 376 6 0 chr13 63705285 63705447 -38167722 + MIR SINE MIR 100 262 0 376 331 12 41 chr13 63705869 63706041 -38167128 - MER5B DNA MER1_type -8 170 4 291 221 10 106 chr13 63706055 63706116 -38167053 + MER5B DNA MER1_type 85 135 -43 2108 92 7 7 chr13 63706116 63706445 -38166724 - AluY SINE Alu 0 329 1 291 221 10 106 chr13 63706445 63706486 -38166683 + MER5B DNA MER1_type 135 178 0 15924 77 3 3 chr13 63706916 63709048 -38164121 + L1PA5 LINE L1 591 2721 -3425 21578 46 0 8 chr13 63709049 63712561 -38160608 + L1PA5 LINE L1 2617 6153 -1 30 27 0 0 chr13 63713617 63713654 -38159515 + AT_rich Low_complexity Low_complexity 1 37 0 1698 176 0 39 chr13 63713654 63713960 -38159209 - AluJo SINE Alu -18 294 1 267 241 17 0 chr13 63715061 63715119 -38158050 + MLT1J LTR MaLR 116 174 -337 229 250 80 10 chr13 63715282 63715382 -38157787 + MLT1L LTR MaLR 509 615 0 300 321 92 16 chr13 63716305 63716489 -38156680 - L2 LINE L2 -76 3237 3040 860 162 3 19 chr13 63718092 63718272 -38154897 - LTR2B LTR ERV1 0 490 279 602 115 0 0 chr13 63718272 63718359 -38154810 - Harlequin LTR ERV1 -575 6321 6235 26019 71 8 5 chr13 63718373 63721719 -38151450 - Harlequin LTR ERV1 -1733 5163 1807 322 244 171 0 chr13 63721723 63721805 -38151364 + LTR8 LTR ERV1 158 253 -438 1125 35 0 0 chr13 63721806 63721950 -38151219 - Harlequin LTR ERV1 -5175 1721 1578 * 4711 111 63 36 chr13 63721948 63723384 -38149785 - Harlequin LTR ERV1 -5481 1415 1 1897 201 68 32 chr13 63723384 63723827 -38149342 - LTR2B LTR ERV1 0 490 32 474 268 50 118 chr13 63724072 63724582 -38148587 + L2 LINE L2 2635 3093 -220 4929 190 24 32 chr13 63724622 63725155 -38148014 - L1MA10 LINE L1 -10 6324 5788 2016 105 0 0 chr13 63725155 63725413 -38147756 - AluSq SINE Alu -19 294 37 4929 190 24 32 chr13 63725413 63725450 -38147719 - L1MA10 LINE L1 -546 5788 5752 1064 108 6 0 chr13 63725450 63725616 -38147553 + (TA)n Simple_repeat Simple_repeat 2 168 0 4929 190 24 32 chr13 63725616 63725746 -38147423 - L1MA10 LINE L1 -582 5752 5622 297 0 0 0 chr13 63725746 63725779 -38147390 + (CA)n Simple_repeat Simple_repeat 2 34 0 423 0 0 0 chr13 63725783 63725830 -38147339 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 4929 190 24 32 chr13 63725830 63727174 -38145995 - L1MA10 LINE L1 -715 5619 4289 360 237 13 0 chr13 63727183 63727259 -38145910 + L2 LINE L2 3227 3303 -10 243 170 0 0 chr13 63727719 63727766 -38145403 + GA-rich Low_complexity Low_complexity 2 48 0 236 338 28 0 chr13 63728874 63728945 -38144224 + MIR SINE MIR 6 78 -184 1479 221 52 68 chr13 63728947 63729463 -38143706 - L1ME3A LINE L1 -8 6162 5655 1537 221 40 8 chr13 63729465 63729836 -38143333 - MLT1B LTR MaLR -5 385 3 1968 272 62 28 chr13 63730028 63731137 -38142032 - L1ME3A LINE L1 -634 5528 4385 276 317 61 0 chr13 63731270 63731352 -38141817 - L2 LINE L2 0 3272 3186 238 324 147 88 chr13 63731355 63731525 -38141644 - L2 LINE L2 -12 3260 3081 652 313 154 35 chr13 63732541 63733247 -38139922 + L2 LINE L2 2188 2977 -337 190 312 78 71 chr13 63733403 63733544 -38139625 + L2 LINE L2 3168 3309 -4 381 294 44 22 chr13 63734012 63734148 -38139021 + MIR SINE MIR 114 252 -10 211 234 26 26 chr13 63735570 63735647 -38137522 + (TA)n Simple_repeat Simple_repeat 2 78 0 228 204 20 0 chr13 63736034 63736083 -38137086 + L2 LINE L2 3221 3270 -2 511 311 101 25 chr13 63738021 63738259 -38134910 + MIR SINE MIR 7 262 0 249 196 0 0 chr13 63739670 63739721 -38133448 + L1MC4 LINE L1 6653 6703 -1339 215 105 35 53 chr13 63739721 63739778 -38133391 + (TA)n Simple_repeat Simple_repeat 2 57 0 189 213 0 0 chr13 63740157 63740204 -38132965 + (TA)n Simple_repeat Simple_repeat 2 48 0 2225 107 3 0 chr13 63741534 63741824 -38131345 - AluSp SINE Alu -21 292 2 2298 107 3 0 chr13 63742885 63743194 -38129975 - AluSx SINE Alu 0 312 3 221 352 26 31 chr13 63743247 63743440 -38129729 + L2 LINE L2 2155 2346 -968 3463 73 6 4 chr13 63743631 63744116 -38129053 + L1PA8 LINE L1 5653 6172 0 236 214 196 98 chr13 63744214 63744326 -38128843 + MIR SINE MIR 64 186 -76 322 314 59 35 chr13 63744431 63744600 -38128569 + MIR SINE MIR 52 224 -38 2218 163 118 9 chr13 63744760 63745208 -38127961 - MLT1D LTR MaLR -8 497 1 334 323 39 16 chr13 63745504 63745631 -38127538 - L2 LINE L2 0 3272 3143 502 339 78 19 chr13 63745667 63745986 -38127183 + MLT1I LTR MaLR 71 408 -1 22 0 0 0 chr13 63746325 63746347 -38126822 + AT_rich Low_complexity Low_complexity 1 22 0 252 315 74 5 chr13 63746352 63746555 -38126614 - L1ME4a LINE L1 -1 6120 5904 924 258 129 23 chr13 63746733 63747337 -38125832 - L1ME1 LINE L1 -4 6162 5426 371 216 52 0 chr13 63747369 63747522 -38125647 + (TA)n Simple_repeat Simple_repeat 2 162 0 205 186 0 0 chr13 63747606 63747649 -38125520 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 67 0 0 chr13 63748267 63748312 -38124857 + AT_rich Low_complexity Low_complexity 1 45 0 21128 97 14 8 chr13 63748373 63752444 -38120725 + L1PA8 LINE L1 2069 6165 -7 1504 228 34 50 chr13 63752578 63752995 -38120174 - MLT2B1 LTR ERVL -2 518 109 2009 121 4 4 chr13 63753189 63753495 -38119674 - AluSx SINE Alu 0 306 1 3931 68 2 4 chr13 63753931 63754447 -38118722 + L1PA8 LINE L1 5653 6167 -5 1663 212 156 41 chr13 63754577 63755039 -38118130 - MLT2B2 LTR ERVL 0 515 1 240 222 32 0 chr13 63755342 63755405 -38117764 + MER5A DNA MER1_type 56 120 -69 21 57 0 0 chr13 63756944 63756979 -38116190 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 63758166 63758194 -38114975 + AT_rich Low_complexity Low_complexity 1 28 0 478 255 11 0 chr13 63758302 63758396 -38114773 - MER58 DNA MER1_type -2325 95 1 25 31 0 0 chr13 63758534 63758566 -38114603 + AT_rich Low_complexity Low_complexity 1 32 0 281 341 83 48 chr13 63759232 63759484 -38113685 + MIR SINE MIR 2 262 0 454 214 66 29 chr13 63759778 63759936 -38113233 - MER20 DNA MER1_type -21 198 1 412 289 74 15 chr13 63760447 63760582 -38112587 + L2 LINE L2 3165 3307 -6 1023 201 56 67 chr13 63760659 63760928 -38112241 + L1PB4 LINE L1 5883 6148 -8 269 365 28 9 chr13 63764649 63764756 -38108413 - L2 LINE L2 0 3272 3164 28 48 0 0 chr13 63764770 63764812 -38108357 + AT_rich Low_complexity Low_complexity 1 42 0 181 276 118 0 chr13 63764920 63764996 -38108173 - MIR SINE MIR -116 146 62 537 299 116 73 chr13 63765095 63765648 -38107521 - L2 LINE L2 0 3313 2705 2215 103 0 0 chr13 63765648 63765929 -38107240 - AluSq SINE Alu -32 281 1 537 299 116 73 chr13 63765929 63766091 -38107078 - L2 LINE L2 -608 2705 2551 728 226 49 19 chr13 63766111 63766377 -38106792 - L1MC5 LINE L1 -44 7917 7644 703 179 0 0 chr13 63766469 63766614 -38106555 - L1MA4 LINE L1 -4 6296 6152 973 231 131 31 chr13 63766654 63767104 -38106065 - L1MC5 LINE L1 -313 7648 7154 659 259 142 37 chr13 63767108 63767482 -38105687 - L2 LINE L2 -755 2559 2147 1454 242 96 43 chr13 63767832 63768344 -38104825 + MLT1E1 LTR MaLR 113 651 -3 21 0 0 0 chr13 63768899 63768920 -38104249 + AT_rich Low_complexity Low_complexity 1 21 0 345 109 0 0 chr13 63769254 63769309 -38103860 + (TC)n Simple_repeat Simple_repeat 2 56 0 240 235 94 0 chr13 63769379 63769455 -38103714 + MLT1J1 LTR MaLR 45 166 -329 258 32 0 0 chr13 63769626 63769657 -38103512 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr13 63770019 63770041 -38103128 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chr13 63770682 63770732 -38102437 + (TA)n Simple_repeat Simple_repeat 2 51 0 8326 169 18 11 chr13 63770732 63772986 -38100183 - L1P5 LINE L1 -371 5780 3514 2280 108 0 0 chr13 63772998 63773295 -38099874 - AluSg SINE Alu -13 297 1 1090 312 123 28 chr13 63773871 63774554 -38098615 + L3 LINE CR1 724 1471 -106 2898 9 0 0 chr13 63774554 63774869 -38098300 + AluYb8 SINE Alu 1 315 -3 1316 160 67 97 chr13 63775079 63775410 -38097759 + LTR47A LTR ERVL 132 452 0 376 344 132 7 chr13 63775417 63775705 -38097464 - L2 LINE L2 -488 2826 2503 2162 110 9 35 chr13 63778868 63779187 -38093982 + AluSx SINE Alu 1 311 -1 347 381 39 19 chr13 63779285 63779545 -38093624 + L1MEd LINE L1 421 685 -5434 2710 178 11 13 chr13 63779560 63780095 -38093074 + L1MC/D LINE L1 5258 5791 -553 471 139 0 0 chr13 63780156 63780228 -38092941 + AluJ/FLAM SINE Alu 1 72 -240 965 226 41 0 chr13 63780228 63780471 -38092698 + L1ME1 LINE L1 5673 5925 -241 2341 294 85 15 chr13 63780610 63781500 -38091669 - L2 LINE L2 -2089 1225 273 476 309 96 21 chr13 63782785 63782973 -38090196 - MIR SINE MIR -49 213 12 26 0 0 0 chr13 63783168 63783194 -38089975 + AT_rich Low_complexity Low_complexity 1 26 0 1111 275 57 54 chr13 63783763 63784261 -38088908 + L2 LINE L2 2745 3240 -73 220 394 31 16 chr13 63784843 63785036 -38088133 - L2 LINE L2 -968 2346 2151 451 206 42 26 chr13 63785158 63785347 -38087822 - L1MEc LINE L1 -2885 4072 3881 235 291 67 73 chr13 63785551 63785730 -38087439 - MLT1H LTR MaLR 0 549 372 360 311 106 63 chr13 63786384 63786751 -38086418 - L1MEc LINE L1 -3939 3199 2817 396 0 0 0 chr13 63786809 63786853 -38086316 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 2109 114 0 0 chr13 63786854 63787134 -38086035 - AluSx SINE Alu -32 280 1 305 269 29 83 chr13 63787343 63787585 -38085584 - L1MEc LINE L1 -4901 2046 1818 258 294 0 0 chr13 63787604 63787706 -38085463 + T-rich Low_complexity Low_complexity 1 102 0 22 0 0 0 chr13 63788678 63788700 -38084469 + AT_rich Low_complexity Low_complexity 1 22 0 640 200 38 65 chr13 63790892 63791077 -38082092 + MIR SINE MIR 70 249 -13 255 307 164 37 chr13 63791139 63791328 -38081841 - MIR SINE MIR -49 213 1 288 0 0 0 chr13 63791369 63791401 -38081768 + (CA)n Simple_repeat Simple_repeat 1 32 0 10415 56 1 0 chr13 63792904 63794991 -38078178 - L1PA5 LINE L1 -1 6153 4066 511 277 57 44 chr13 63795232 63795550 -38077619 + L1P LINE L1 3634 3955 -2191 22 35 0 0 chr13 63795805 63795834 -38077335 + AT_rich Low_complexity Low_complexity 1 29 0 1075 99 49 19 chr13 63795970 63796132 -38077037 + AluSg/x SINE Alu 85 251 -61 880 282 69 38 chr13 63796140 63796502 -38076667 + L1MC4a LINE L1 5438 5816 -1992 1393 205 0 54 chr13 63796502 63796819 -38076350 + AluJo SINE Alu 1 300 -2 880 282 69 38 chr13 63796819 63796874 -38076295 + L1MC4a LINE L1 5816 5868 -1940 348 240 23 31 chr13 63797150 63797279 -38075890 + HAL1 LINE L1 2236 2363 -144 812 239 96 10 chr13 63798329 63798538 -38074631 + MER39 LTR ERV1 2 228 -479 * 1721 188 39 21 chr13 63798535 63798919 -38074250 + MER39 LTR ERV1 175 707 0 467 191 135 21 chr13 63799774 63799915 -38073254 - L1MB8 LINE L1 -1 6177 6021 1147 159 170 38 chr13 63799943 63800232 -38072937 - L1MEc LINE L1 -5516 1343 1017 1619 124 4 0 chr13 63800232 63800474 -38072695 - pTR5 LTR ERV1 -2040 398 156 2101 133 3 13 chr13 63800533 63800848 -38072321 - AluSx SINE Alu 0 312 1 2000 263 73 70 chr13 63800848 63801715 -38071454 - L1MEc LINE L1 -5884 975 107 4301 66 20 47 chr13 63801786 63802869 -38070300 - MER11A LTR ERVK 0 1266 1 10629 74 5 5 chr13 63802869 63804234 -38068935 - HERVK11 LTR ERVK 0 7953 6589 7036 202 158 19 chr13 63804237 63804318 -38068851 - L1PBa LINE L1 -4535 2328 2260 5105 109 30 8 chr13 63804318 63805081 -38068088 + LTR17 LTR ERV1 1 780 0 7036 202 158 19 chr13 63805081 63806929 -38066240 - L1PBa LINE L1 -4603 2260 132 2518 119 34 3 chr13 63807118 63807504 -38065665 + MER48 LTR ERV1 1 398 0 1662 342 119 31 chr13 63807717 63809140 -38064029 + L2 LINE L2 1698 3250 -63 201 338 13 0 chr13 63809252 63809329 -38063840 + L2 LINE L2 2454 2531 -783 2326 109 29 0 chr13 63809345 63809692 -38063477 - L1PA11 LINE L1 -2 6172 5816 3843 85 119 5 chr13 63809693 63810280 -38062889 - L1PA10 LINE L1 -11 6157 5504 225 0 0 0 chr13 63810367 63810392 -38062777 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1868 209 4 22 chr13 63810737 63811010 -38062159 + MER89 LTR ERV1 1 277 -282 2987 172 60 81 chr13 63811010 63811853 -38061316 + LTR1B LTR ERV1 1 826 0 1868 209 4 22 chr13 63811853 63811889 -38061280 + MER89 LTR ERV1 277 312 -247 2392 85 3 0 chr13 63811889 63812194 -38060975 - AluSg SINE Alu -3 307 2 1868 209 4 22 chr13 63812194 63812350 -38060819 + MER89 LTR ERV1 312 557 -2 362 119 30 0 chr13 63815445 63815512 -38057657 + L1MC1 LINE L1 6264 6332 -1 29 47 0 0 chr13 63817139 63817182 -38055987 + AT_rich Low_complexity Low_complexity 1 43 0 212 356 89 0 chr13 63817211 63817312 -38055857 - MIR SINE MIR -75 187 78 2621 122 24 16 chr13 63817347 63817772 -38055397 - MSTA LTR MaLR 0 428 1 325 360 40 17 chr13 63817949 63818124 -38055045 + L2 LINE L2 2025 2203 -1111 1817 131 101 15 chr13 63818132 63818469 -38054700 + THE1C LTR MaLR 10 375 0 768 261 10 75 chr13 63818469 63818775 -38054394 + L2 LINE L2 2199 2484 -830 8291 99 7 0 chr13 63819373 63820565 -38052604 - L1PA8 LINE L1 -1381 4765 3566 6818 73 3 3 chr13 63820565 63821937 -38051232 + L1PA8 LINE L1 4788 6164 -8 21 0 0 0 chr13 63821937 63821958 -38051211 + AT_rich Low_complexity Low_complexity 1 21 0 528 304 87 43 chr13 63821970 63822437 -38050732 + L1ME LINE L1 4954 5442 -748 225 286 65 71 chr13 63822561 63822792 -38050377 + L1ME LINE L1 5528 5758 -363 2850 0 0 0 chr13 63822792 63823096 -38050073 + AluYa5 SINE Alu 1 304 -7 225 286 65 71 chr13 63823096 63823158 -38050011 + L1ME LINE L1 5758 5819 -302 254 333 219 2 chr13 63824217 63824604 -38048565 + L2 LINE L2 2637 3120 -193 12048 161 31 57 chr13 63824640 63825425 -38047744 - L1MA8 LINE L1 -16 6275 5471 1589 34 5 24 chr13 63825425 63825633 -38047536 - L1PA4 LINE L1 -1 6154 5951 12048 161 31 57 chr13 63825633 63825928 -38047241 - L1MA8 LINE L1 -820 5471 5170 856 230 0 17 chr13 63825928 63826106 -38047063 - FAM SINE Alu 0 175 1 12048 161 31 57 chr13 63826106 63827324 -38045845 - L1MA8 LINE L1 -1121 5170 3922 2972 54 0 0 chr13 63827324 63827692 -38045477 + L1PA6 LINE L1 5784 6154 0 12048 161 31 57 chr13 63827692 63829000 -38044169 - L1MA8 LINE L1 -2369 3922 2599 210 308 189 25 chr13 63829003 63829162 -38044007 + L2 LINE L2 3111 3295 -18 22 35 0 0 chr13 63830690 63830719 -38042450 + AT_rich Low_complexity Low_complexity 1 29 0 432 311 99 40 chr13 63830905 63831127 -38042042 - MIR SINE MIR -3 259 25 214 109 0 87 chr13 63831368 63831414 -38041755 + (TTCCC)n Simple_repeat Simple_repeat 4 45 0 1021 275 66 56 chr13 63831934 63832418 -38040751 + MLT1J LTR MaLR 3 491 -20 200 355 59 33 chr13 63832501 63832653 -38040516 - MIR SINE MIR -67 195 40 369 304 103 15 chr13 63832729 63832933 -38040236 + MIR SINE MIR 40 261 -1 295 357 31 16 chr13 63832976 63833105 -38040064 + L2 LINE L2 3134 3264 -8 22 70 0 0 chr13 63833619 63833662 -38039507 + AT_rich Low_complexity Low_complexity 1 43 0 6711 181 30 11 chr13 63835026 63835393 -38037776 + L1MA2 LINE L1 4033 4392 -1912 180 0 0 0 chr13 63835393 63835413 -38037756 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 6711 181 30 11 chr13 63835413 63837260 -38035909 + L1MA2 LINE L1 4392 6294 -10 32 0 0 0 chr13 63838164 63838196 -38034973 + AT_rich Low_complexity Low_complexity 1 32 0 269 286 62 45 chr13 63838614 63838726 -38034443 + L2 LINE L2 3158 3271 -1 2029 135 26 0 chr13 63839290 63839594 -38033575 + AluSx SINE Alu 1 312 0 763 179 179 6 chr13 63840157 63840325 -38032844 + L1MDa LINE L1 26 222 -6318 546 148 59 30 chr13 63840322 63840457 -38032712 + L1MD1 LINE L1 5908 6046 -196 * 2323 187 37 67 chr13 63840457 63840482 -38032687 + MLT2B2 LTR ERVL 1 25 -495 7846 17 0 0 chr13 63840482 63841796 -38031373 + L1PA2 LINE L1 4842 6155 0 2323 187 37 67 chr13 63841796 63842306 -38030863 + MLT2B2 LTR ERVL 25 520 0 884 184 5 15 chr13 63842306 63842512 -38030657 + L1MD1 LINE L1 6039 6242 0 10856 212 22 8 chr13 63842523 63844995 -38028174 + L1P LINE L1 2561 5066 -1080 261 180 0 0 chr13 63845545 63845595 -38027574 + L1MA9 LINE L1 6225 6274 -38 22 35 0 0 chr13 63845595 63845624 -38027545 + AT_rich Low_complexity Low_complexity 1 29 0 655 301 40 22 chr13 63845842 63846068 -38027101 + MIR SINE MIR 32 261 -1 496 258 167 29 chr13 63846147 63846387 -38026782 + MLT1J1 LTR MaLR 20 292 -154 2592 11 0 0 chr13 63847418 63847702 -38025467 - AluYb8 SINE Alu 0 318 35 304 289 57 6 chr13 63848592 63848751 -38024418 + L1ME LINE L1 5634 5800 -321 1064 149 20 0 chr13 63850166 63850361 -38022808 + L1MA2 LINE L1 6106 6304 0 391 285 42 24 chr13 63850540 63850705 -38022464 + HAL1b LINE L1 301 468 -880 2332 237 37 46 chr13 63852345 63852999 -38020170 - MER21-int LTR ERV1 -44 4147 3500 232 303 66 20 chr13 63853000 63853198 -38019971 + HAL1b LINE L1 466 672 -676 241 200 0 36 chr13 63853202 63853257 -38019912 + HAL1b LINE L1 438 490 -858 180 111 0 0 chr13 63853352 63853379 -38019790 + (A)n Simple_repeat Simple_repeat 1 27 0 557 235 23 45 chr13 63853385 63853606 -38019563 + HAL1b LINE L1 615 830 -518 424 242 24 40 chr13 63853634 63853700 -38019469 + MIR SINE MIR 6 71 -191 2324 60 0 0 chr13 63853700 63853999 -38019170 - L1PA13 LINE L1 -2 6161 5863 424 242 24 40 chr13 63853999 63854056 -38019113 + MIR SINE MIR 71 127 -135 1537 285 141 8 chr13 63854131 63854823 -38018346 + L2 LINE L2 2276 3052 -261 17378 155 42 15 chr13 63854826 63859475 -38013694 - L1MA3 LINE L1 0 7724 3205 2216 113 3 0 chr13 63859475 63859776 -38013393 - AluSp SINE Alu -11 302 1 17378 155 42 15 chr13 63859776 63862406 -38010763 - L1MA3 LINE L1 -4519 3205 217 2186 122 35 22 chr13 63862406 63862776 -38010393 - THE1C LTR MaLR 0 375 1 17378 155 42 15 chr13 63862776 63862852 -38010317 - L1MA3 LINE L1 -7507 217 145 811 151 48 18 chr13 63862962 63863128 -38010041 - L1MA3 LINE L1 -7382 183 13 385 297 55 35 chr13 63863325 63863357 -38009812 + L2 LINE L2 3162 3192 -121 186 43 0 0 chr13 63863357 63863380 -38009789 + (CA)n Simple_repeat Simple_repeat 1 23 0 385 297 55 35 chr13 63863380 63863492 -38009677 + L2 LINE L2 3192 3309 -4 276 275 37 64 chr13 63863605 63863714 -38009455 - MIR SINE MIR -113 149 44 288 297 20 10 chr13 63864845 63864946 -38008223 + CT-rich Low_complexity Low_complexity 1 102 0 272 179 9 57 chr13 63864962 63865068 -38008101 + CT-rich Low_complexity Low_complexity 2 102 0 613 252 0 0 chr13 63865454 63865589 -38007580 + FLAM_A SINE Alu 5 139 -3 2070 137 32 24 chr13 63865702 63866074 -38007095 - THE1C LTR MaLR 0 375 1 3365 144 18 26 chr13 63867897 63868502 -38004667 - MER4A LTR ERV1 0 600 1 430 326 33 32 chr13 63868531 63868721 -38004448 - MIR SINE MIR -38 224 35 208 317 58 29 chr13 63868845 63868949 -38004220 - L2 LINE L2 -13 3300 3194 1467 216 143 5 chr13 63869294 63869706 -38003463 + MLT2B1 LTR ERVL 1 469 -51 273 171 0 7 chr13 63869749 63869818 -38003351 + MLT2B1 LTR ERVL 446 517 -3 1077 157 30 45 chr13 63870196 63870394 -38002775 - MLT1A1 LTR MaLR 0 365 171 721 171 26 26 chr13 63870408 63870560 -38002609 - LTR9 LTR ERV1 0 612 461 2477 136 26 92 chr13 63870592 63870643 -38002526 - LTR9 LTR ERV1 -144 468 415 1885 100 41 11 chr13 63870643 63870946 -38002223 - AluSq SINE Alu 0 317 7 2477 136 26 92 chr13 63870946 63871394 -38001775 - LTR9 LTR ERV1 -197 415 1 788 207 0 0 chr13 63871402 63871552 -38001617 - MLT1A1 LTR MaLR -215 150 1 235 274 32 42 chr13 63871604 63871699 -38001470 - HAL1 LINE L1 -110 2397 2304 347 266 64 0 chr13 63872461 63872555 -38000614 - HAL1 LINE L1 -1577 930 831 2333 108 70 41 chr13 63873599 63873759 -37999410 - MSTA LTR MaLR 0 428 274 261 0 0 0 chr13 63873759 63873788 -37999381 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 2333 108 70 41 chr13 63873788 63874043 -37999126 - MSTA LTR MaLR -154 274 1 388 354 65 4 chr13 63874288 63874517 -37998652 - L3 LINE CR1 -801 776 534 214 214 71 0 chr13 63875699 63875755 -37997414 + GA-rich Low_complexity Low_complexity 3 62 0 229 167 62 0 chr13 63876690 63876738 -37996431 - MADE1 DNA Mariner -29 51 1 24 0 0 0 chr13 63876738 63876762 -37996407 + AT_rich Low_complexity Low_complexity 1 24 0 306 330 35 9 chr13 63876912 63877027 -37996142 - MIR3 SINE MIR -34 174 57 2252 95 7 0 chr13 63877960 63878255 -37994914 + AluSp SINE Alu 4 300 -13 1815 161 3 20 chr13 63880283 63880587 -37992582 - AluJo SINE Alu -13 299 1 246 230 70 40 chr13 63880735 63880835 -37992334 + MIR3 SINE MIR 88 190 -18 248 231 39 13 chr13 63881199 63881277 -37991892 + L1MEd LINE L1 12 91 -6028 379 164 0 0 chr13 63881476 63881537 -37991632 + T-rich Low_complexity Low_complexity 5 65 0 816 142 23 11 chr13 63881538 63881714 -37991455 + CT-rich Low_complexity Low_complexity 3 180 0 821 55 0 9 chr13 63881716 63881825 -37991344 - AluSp/q SINE Alu -1 312 205 235 309 97 73 chr13 63881920 63882179 -37990990 + L1MEd LINE L1 500 764 -5355 261 0 0 0 chr13 63882879 63882908 -37990261 + (A)n Simple_repeat Simple_repeat 1 29 0 1225 221 0 19 chr13 63884154 63884278 -37988891 - AluJb SINE Alu -54 258 133 281 26 26 0 chr13 63884278 63884316 -37988853 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 1225 221 0 19 chr13 63884316 63884454 -37988715 - AluJb SINE Alu -179 133 1 254 340 38 9 chr13 63884604 63884710 -37988459 - MIR SINE MIR -102 160 52 1029 148 128 0 chr13 63885207 63885410 -37987759 - L1MD3 LINE L1 -14 7981 7753 21 0 0 0 chr13 63886136 63886157 -37987012 + AT_rich Low_complexity Low_complexity 1 21 0 1795 177 0 35 chr13 63886959 63887270 -37985899 - AluJb SINE Alu -12 300 1 2053 108 0 34 chr13 63887500 63887796 -37985373 - AluSg SINE Alu -9 301 16 25 0 0 0 chr13 63888085 63888110 -37985059 + AT_rich Low_complexity Low_complexity 1 25 0 1673 128 117 8 chr13 63888574 63888839 -37984330 + AluSg1 SINE Alu 3 296 -13 275 337 112 45 chr13 63888966 63889233 -37983936 - L2 LINE L2 -468 2846 2562 284 343 68 7 chr13 63890016 63890162 -37983007 + MIR SINE MIR 37 191 -71 319 303 66 0 chr13 63891848 63891970 -37981199 + MER94 DNA DNA 5 134 0 426 294 10 0 chr13 63892833 63892935 -37980234 + MIR3 SINE MIR 61 163 -45 21 0 0 0 chr13 63893299 63893320 -37979849 + AT_rich Low_complexity Low_complexity 1 21 0 273 309 32 0 chr13 63893385 63893479 -37979690 + MIR SINE MIR 71 167 -95 373 311 50 65 chr13 63895476 63895736 -37977433 + L1MC/D LINE L1 4788 5043 -1103 1217 80 0 6 chr13 63895736 63895911 -37977258 - L1P4 LINE L1 -685 5483 5310 321 71 0 0 chr13 63895910 63895952 -37977217 + L1PA13 LINE L1 6093 6134 -29 * 1028 51 9 7 chr13 63895952 63896271 -37976898 + MLT2A1 LTR ERVL 1 453 0 709 264 49 42 chr13 63896626 63896891 -37976278 + L1MC/D LINE L1 5333 5599 -2209 21 0 0 0 chr13 63896905 63896926 -37976243 + AT_rich Low_complexity Low_complexity 1 21 0 181 319 53 11 chr13 63897623 63897717 -37975452 + L2 LINE L2 2444 2541 -773 5676 149 20 2 chr13 63897758 63898892 -37974277 + L1PA16 LINE L1 5008 6162 -4 1146 183 9 9 chr13 63898944 63899168 -37974001 - Tigger1 DNA MER2_type -2123 295 72 6588 13 0 1 chr13 63899200 63899951 -37973218 - L1PA3 LINE L1 -1 6154 5405 1157 171 34 24 chr13 63899951 63900304 -37972865 - MSTA LTR MaLR -4 424 1 372 236 182 25 chr13 63900477 63900680 -37972489 - L1MC4a LINE L1 -1866 5942 5708 1933 147 6 19 chr13 63901829 63902142 -37971027 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr13 63902376 63902400 -37970769 + AT_rich Low_complexity Low_complexity 1 24 0 954 240 77 0 chr13 63902475 63902683 -37970486 - MER58A DNA MER1_type 0 224 1 2753 238 65 19 chr13 63902805 63903356 -37969813 - L1ME1 LINE L1 -5 6161 5552 7357 30 9 0 chr13 63903356 63904570 -37968599 - L1PA4 LINE L1 0 6155 4935 2753 238 65 19 chr13 63904570 63904964 -37968205 - L1ME1 LINE L1 -614 5552 5178 335 105 18 0 chr13 63908302 63908359 -37964810 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 1981 121 169 19 chr13 63909780 63909968 -37963201 - MSTA LTR MaLR 0 428 270 180 0 0 0 chr13 63909968 63909988 -37963181 + (GA)n Simple_repeat Simple_repeat 1 20 0 1981 121 169 19 chr13 63909988 63910171 -37962998 - MSTA LTR MaLR -158 270 1 337 314 113 46 chr13 63910257 63910451 -37962718 - L1ME3A LINE L1 -301 5869 5663 501 266 68 54 chr13 63910545 63910777 -37962392 + MLT1J1 LTR MaLR 26 255 -195 1370 212 34 10 chr13 63910777 63911074 -37962095 - AluJo SINE Alu -7 305 2 501 266 68 54 chr13 63911074 63911137 -37962032 + MLT1J1 LTR MaLR 255 316 -134 662 250 78 39 chr13 63911271 63911731 -37961438 - L1ME3A LINE L1 -668 5498 5023 558 243 15 15 chr13 63911799 63911935 -37961234 - AluJo SINE Alu -162 150 15 1597 151 43 0 chr13 63912069 63912368 -37960801 - L1MA9 LINE L1 0 6312 6001 566 294 116 22 chr13 63912505 63913504 -37959665 - L1ME3A LINE L1 -1881 4265 3097 6289 181 92 76 chr13 63913800 63915354 -37957815 - MER52A LTR ERV1 0 1755 177 1021 266 85 27 chr13 63915389 63915720 -37957449 + LTR40b LTR ERVL 109 458 -4 28 0 0 0 chr13 63915931 63915959 -37957210 + AT_rich Low_complexity Low_complexity 1 28 0 1478 134 64 3 chr13 63918336 63918619 -37954550 - AluSq SINE Alu -13 300 1 1393 166 115 14 chr13 63919348 63919626 -37953543 + AluSg SINE Alu 1 306 -4 1117 248 66 47 chr13 63919635 63920043 -37953126 + MLT1H LTR MaLR 74 489 -60 494 16 16 0 chr13 63920056 63920119 -37953050 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 230 367 71 12 chr13 63920741 63920910 -37952259 + L3 LINE CR1 1377 1555 -22 553 229 98 121 chr13 63921295 63921610 -37951559 - MLT1A1 LTR MaLR -55 310 3 183 42 0 0 chr13 63921832 63921856 -37951313 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 5338 105 22 0 chr13 63921856 63922636 -37950533 - L1PA13 LINE L1 -4 6159 5363 50 71 0 0 chr13 63922777 63922876 -37950293 + AT_rich Low_complexity Low_complexity 1 99 0 624 298 66 91 chr13 63922960 63923399 -37949770 + LTR16B LTR ERVL 37 464 0 6553 169 10 29 chr13 63923536 63924417 -37948752 - L1PB4 LINE L1 -3 6153 5257 327 96 77 0 chr13 63924417 63924469 -37948700 + MADE1 DNA Mariner 1 56 -24 6553 169 10 29 chr13 63924469 63925806 -37947363 - L1PB4 LINE L1 -899 5257 3935 4360 193 44 2 chr13 63925806 63926673 -37946496 - Tigger6a DNA MER2_type -180 903 1 1209 163 65 22 chr13 63926744 63926867 -37946302 + L1MA10 LINE L1 6039 6155 -179 351 44 0 0 chr13 63926867 63926912 -37946257 + (CA)n Simple_repeat Simple_repeat 2 46 0 1209 163 65 22 chr13 63926912 63927065 -37946104 + L1MA10 LINE L1 6155 6327 -7 278 345 79 74 chr13 63927317 63928010 -37945159 - L2 LINE L2 -530 2784 2088 477 225 169 70 chr13 63930142 63930284 -37942885 + MLT1I LTR MaLR 292 408 -1 205 184 0 0 chr13 63930664 63930702 -37942467 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 231 234 90 27 chr13 63930903 63931014 -37942155 - L1ME LINE L1 -299 5822 5705 584 313 126 30 chr13 63931359 63931755 -37941414 - HAL1 LINE L1 -941 1566 1133 256 371 48 0 chr13 63934606 63934711 -37938458 + L2 LINE L2 3149 3258 -14 290 388 112 9 chr13 63935319 63935543 -37937626 - L2 LINE L2 -198 3074 2828 438 315 35 31 chr13 63935937 63936183 -37936986 - HERVL LTR ERVL -2164 3321 3072 4109 189 55 18 chr13 63936318 63937140 -37936029 - MER21B LTR ERV1 -11 852 1 710 353 46 10 chr13 63937145 63937539 -37935630 - HERVL LTR ERVL -2825 2939 2532 682 370 61 15 chr13 63937644 63938238 -37934931 - HERVL LTR ERVL -3384 2380 1724 281 318 156 11 chr13 63939005 63939184 -37933985 + L1MEc LINE L1 374 578 -5985 354 244 59 1 chr13 63939220 63939360 -37933809 + L1MEc LINE L1 1368 1597 -4785 460 317 70 13 chr13 63939753 63939980 -37933189 + MIR SINE MIR 18 257 -5 1590 152 36 56 chr13 63939983 63940286 -37932883 + AluJb SINE Alu 1 297 -15 256 164 45 0 chr13 63941200 63941267 -37931902 + L1ME4a LINE L1 6052 6121 0 355 267 67 27 chr13 63941918 63942068 -37931101 - MIR SINE MIR -8 254 99 531 313 58 14 chr13 63942358 63942566 -37930603 - MIR SINE MIR 0 262 46 303 282 46 23 chr13 63942693 63942824 -37930345 - MER94 DNA DNA 0 134 1 27 0 0 0 chr13 63944024 63944051 -37929118 + AT_rich Low_complexity Low_complexity 1 27 0 182 267 0 152 chr13 63945081 63945186 -37927983 + MIR3 SINE MIR 109 197 -11 479 261 37 15 chr13 63948192 63948326 -37924843 - MER103 DNA DNA -2 164 28 658 177 74 86 chr13 63948444 63948619 -37924550 + MER5A DNA MER1_type 1 173 -16 261 301 65 0 chr13 63949707 63949800 -37923369 - MLT1I LTR MaLR -6 403 305 21 57 0 0 chr13 63949902 63949937 -37923232 + AT_rich Low_complexity Low_complexity 1 35 0 2110 79 4 11 chr13 63950301 63950578 -37922591 - AluSc SINE Alu -16 293 19 205 357 7 26 chr13 63950748 63950902 -37922267 + CT-rich Low_complexity Low_complexity 5 155 0 1577 139 4 0 chr13 63951768 63952012 -37921157 - pTR5 LTR ERV1 -2038 400 156 2065 148 3 0 chr13 63952076 63952386 -37920783 - AluSx SINE Alu -1 311 1 1127 269 94 104 chr13 63952386 63953143 -37920026 - L1M4b LINE L1 -5884 975 227 22 0 0 0 chr13 63953538 63953560 -37919609 + AT_rich Low_complexity Low_complexity 1 22 0 2322 146 26 16 chr13 63953725 63954149 -37919020 - MSTA LTR MaLR 0 428 1 263 331 50 22 chr13 63954326 63954465 -37918704 + L2 LINE L2 2025 2167 -1147 774 167 119 12 chr13 63954509 63954677 -37918492 + THE1C LTR MaLR 10 195 -180 481 246 99 7 chr13 63956129 63956271 -37916898 + MLT1I LTR MaLR 254 408 -1 205 184 0 0 chr13 63956651 63956689 -37916480 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 231 234 90 27 chr13 63956890 63957001 -37916168 - L1ME LINE L1 -299 5822 5705 582 313 126 30 chr13 63957346 63957742 -37915427 - HAL1 LINE L1 -941 1566 1133 256 371 48 0 chr13 63960594 63960699 -37912470 + L2 LINE L2 3149 3258 -14 294 388 112 9 chr13 63961307 63961531 -37911638 - L2 LINE L2 -198 3074 2828 359 244 59 1 chr13 63962341 63962481 -37910688 + L1MDa LINE L1 1368 1597 -4785 483 313 70 13 chr13 63962874 63963101 -37910068 + MIR SINE MIR 18 257 -5 1565 152 36 56 chr13 63963104 63963407 -37909762 + AluJb SINE Alu 1 297 -15 263 164 45 0 chr13 63964321 63964388 -37908781 + L1ME4a LINE L1 6052 6121 0 361 267 67 27 chr13 63965039 63965189 -37907980 - MIR SINE MIR -8 254 99 544 293 67 24 chr13 63965479 63965687 -37907482 - MIR SINE MIR 0 262 46 305 282 46 23 chr13 63965814 63965945 -37907224 - MER94 DNA DNA 0 134 1 448 211 92 18 chr13 63966817 63966926 -37906243 + L2 LINE L2 3197 3313 0 716 197 0 0 chr13 63967134 63967266 -37905903 - FLAM_A SINE Alu -1 132 1 354 290 93 31 chr13 63967392 63967554 -37905615 + MER20B DNA MER1_type 3 174 -609 627 164 0 0 chr13 63967567 63967677 -37905492 - AluSg/x SINE Alu -7 303 194 320 265 111 26 chr13 63967782 63967899 -37905270 + MIR SINE MIR 34 160 -102 269 247 12 25 chr13 63968067 63968148 -37905021 - MLT1K LTR MaLR 0 588 509 244 228 152 0 chr13 63968156 63968235 -37904934 - MLT1K LTR MaLR 0 588 498 180 326 0 0 chr13 63968280 63968329 -37904840 + L2 LINE L2 3195 3243 -70 219 354 8 46 chr13 63968853 63968983 -37904186 - L2 LINE L2 -15 3298 3174 2359 50 3 14 chr13 63970063 63970360 -37902809 + AluY SINE Alu 1 294 -17 1484 320 113 8 chr13 63970718 63971530 -37901639 + L2 LINE L2 2397 3299 -14 2232 76 0 20 chr13 63971637 63971938 -37901231 - AluY SINE Alu -16 295 1 22 0 0 0 chr13 63972019 63972041 -37901128 + AT_rich Low_complexity Low_complexity 1 22 0 225 203 89 38 chr13 63972064 63972143 -37901026 + MIR SINE MIR 102 184 -78 197 330 0 80 chr13 63974063 63974163 -37899006 - L2 LINE L2 -1 3312 3221 21 0 0 0 chr13 63975928 63975949 -37897220 + AT_rich Low_complexity Low_complexity 1 21 0 185 393 43 0 chr13 63976129 63976246 -37896923 - MIR3 SINE MIR -2 206 85 25 65 0 0 chr13 63978626 63978672 -37894497 + AT_rich Low_complexity Low_complexity 1 46 0 529 272 95 19 chr13 63979903 63979976 -37893193 + MER5B DNA MER1_type 9 75 -103 200 59 29 0 chr13 63979976 63980010 -37893159 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 529 272 95 19 chr13 63980010 63980094 -37893075 + MER5B DNA MER1_type 75 178 0 1787 203 83 7 chr13 63980193 63980627 -37892542 - Charlie1b DNA MER1_type 0 523 57 1767 189 81 11 chr13 63981275 63981645 -37891524 + MSTD LTR MaLR 1 396 0 601 294 17 17 chr13 63981878 63982058 -37891111 - L3 LINE CR1 -795 782 603 201 74 0 0 chr13 63982577 63982604 -37890565 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr13 63982977 63983002 -37890167 + AT_rich Low_complexity Low_complexity 1 25 0 2407 73 0 0 chr13 63983012 63983313 -37889856 + AluY SINE Alu 1 301 -10 636 248 159 89 chr13 63983687 63984183 -37888986 - MLT1F LTR MaLR -11 531 1 730 297 138 13 chr13 63984679 63985130 -37888039 + L1ME3A LINE L1 4883 5389 -757 345 231 157 9 chr13 63985146 63985254 -37887915 + L1ME3A LINE L1 5452 5575 -587 246 128 0 0 chr13 63985266 63985305 -37887864 + (TG)n Simple_repeat Simple_repeat 2 40 0 796 239 60 106 chr13 63985390 63985522 -37887647 + L1ME3A LINE L1 5782 5918 -252 513 32 0 0 chr13 63985522 63985585 -37887584 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 796 239 60 106 chr13 63985585 63985850 -37887319 + L1ME3A LINE L1 5918 6161 -9 291 312 26 0 chr13 63987684 63987761 -37885408 - L2 LINE L2 -5 3267 3189 185 397 83 0 chr13 63988412 63988533 -37884636 + MIR3 SINE MIR 60 190 -18 5202 134 14 0 chr13 63990397 63991203 -37881966 + L1PA16 LINE L1 5339 6155 -11 2169 93 0 0 chr13 63991893 63992196 -37880973 - AluSc SINE Alu 0 303 1 346 336 24 0 chr13 63992389 63992514 -37880655 - MER5A DNA MER1_type -3 186 59 226 292 15 0 chr13 63993539 63993604 -37879565 - L2 LINE L2 0 3313 3248 269 313 52 21 chr13 63993802 63993898 -37879271 + MIR SINE MIR 2 100 -162 820 135 0 0 chr13 63994456 63994589 -37878580 + L1PB2 LINE L1 6017 6149 -2 234 344 66 25 chr13 63994641 63994763 -37878406 + L2 LINE L2 3139 3265 -7 4526 164 37 8 chr13 63994874 63995729 -37877440 - L1PB4 LINE L1 0 6156 5277 270 360 120 36 chr13 63995784 63996557 -37876612 + L2 LINE L2 2030 2867 -447 279 338 26 45 chr13 63996689 63996843 -37876326 - MIR SINE MIR -41 221 71 307 327 44 0 chr13 63997538 63997651 -37875518 + L2 LINE L2 3193 3310 -3 302 374 31 49 chr13 63998111 63998461 -37874708 + L1MDa LINE L1 5 348 -6192 930 224 109 15 chr13 63999123 63999451 -37873718 + L1MDa LINE L1 1015 1350 -5193 264 130 0 0 chr13 63999541 63999587 -37873582 + (CA)n Simple_repeat Simple_repeat 2 47 0 384 138 0 0 chr13 64002558 64002623 -37870546 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 0 0 0 chr13 64003641 64003663 -37869506 + AT_rich Low_complexity Low_complexity 1 22 0 776 146 55 12 chr13 64004552 64004716 -37868453 - L1MA4 LINE L1 -10 6290 6120 180 295 13 135 chr13 64004911 64005067 -37868102 - L2 LINE L2 -198 3074 2938 508 250 119 6 chr13 64005998 64006158 -37867011 - MER45A DNA AcHobo 0 178 1 180 295 82 16 chr13 64007645 64007706 -37865463 - L2 LINE L2 -216 3056 2992 209 161 0 0 chr13 64008037 64008068 -37865101 + (TGG)n Simple_repeat Simple_repeat 2 32 0 32 57 0 0 chr13 64008282 64008335 -37864834 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 64009654 64009676 -37863493 + AT_rich Low_complexity Low_complexity 1 22 0 564 118 0 0 chr13 64011857 64011950 -37861219 - L1MA8 LINE L1 -6 6285 6193 180 146 24 49 chr13 64012068 64012109 -37861060 + L3 LINE CR1 899 938 -639 1403 189 108 46 chr13 64012255 64012626 -37860543 - MLT2C1 LTR ERVL -3 394 1 936 251 31 31 chr13 64013083 64013402 -37859767 - L1MA9 LINE L1 -37 6275 5957 1464 170 35 0 chr13 64013430 64013734 -37859435 + Tigger7 DNA MER2_type 1 2581 -6 316 238 0 0 chr13 64014436 64014499 -37858670 - MIR SINE MIR -61 147 85 23 33 0 0 chr13 64014864 64014894 -37858275 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 64016409 64016430 -37856739 + (T)n Simple_repeat Simple_repeat 1 21 0 942 110 0 0 chr13 64016430 64016557 -37856612 - AluSq SINE Alu -58 255 129 345 221 0 0 chr13 64016557 64016661 -37856508 + (TA)n Simple_repeat Simple_repeat 1 104 0 453 124 6 50 chr13 64016714 64016875 -37856294 + (TA)n Simple_repeat Simple_repeat 2 155 0 200 159 0 23 chr13 64016980 64017024 -37856145 + (TA)n Simple_repeat Simple_repeat 2 44 0 316 232 61 0 chr13 64017089 64017171 -37855998 + L1MC4 LINE L1 6617 6703 -1339 403 67 0 56 chr13 64017175 64017265 -37855904 + (TA)n Simple_repeat Simple_repeat 1 85 0 235 120 0 20 chr13 64017265 64017315 -37855854 + LTR66 LTR ERVL 399 447 -163 225 225 113 86 chr13 64017341 64017492 -37855677 - HAL1b LINE L1 -449 899 745 237 261 0 0 chr13 64017929 64017975 -37855194 - HAL1 LINE L1 -643 1864 1819 1495 268 84 29 chr13 64018181 64018740 -37854429 - MLT1E2 LTR MaLR -24 602 13 26 74 0 0 chr13 64020651 64020705 -37852464 + AT_rich Low_complexity Low_complexity 1 54 0 2827 257 81 10 chr13 64021982 64022986 -37850183 + L1M4 LINE L1 3093 4167 -1979 1968 188 11 6 chr13 64023030 64023386 -37849783 + MLT1A1 LTR MaLR 8 365 0 680 301 78 57 chr13 64023387 64024164 -37849005 + L1M4 LINE L1 3003 3800 -2346 1120 262 58 25 chr13 64024794 64025156 -37848013 + MLT1A2 LTR MaLR 1 374 0 1536 176 115 3 chr13 64025814 64026127 -37847042 + MER7A DNA MER2_type 1 346 0 802 191 0 13 chr13 64026565 64026717 -37846452 - MER6 DNA MER2_type 0 865 -5 26 0 0 0 chr13 64026817 64026843 -37846326 + AT_rich Low_complexity Low_complexity 1 26 0 242 367 100 33 chr13 64028678 64028798 -37844371 + L2 LINE L2 3096 3223 -49 714 247 54 0 chr13 64029396 64029562 -37843607 + MER45A DNA AcHobo 2 176 -2 2176 108 0 0 chr13 64029654 64029949 -37843220 + AluSg SINE Alu 1 295 -15 486 171 17 17 chr13 64030085 64030202 -37842967 + L1MA7 LINE L1 6175 6291 0 765 270 119 38 chr13 64030308 64030886 -37842283 - L1MC5 LINE L1 -32 7929 7305 339 136 0 0 chr13 64030930 64030989 -37842180 - L1MA9 LINE L1 0 6312 6254 8187 188 47 7 chr13 64031000 64032736 -37840433 - L1 LINE L1 -1080 6026 4222 761 203 0 13 chr13 64032731 64032884 -37840285 - L1 LINE L1 -4334 2773 2623 * 879 264 65 43 chr13 64032882 64033253 -37839916 - L1 LINE L1 -6535 495 117 274 283 97 21 chr13 64033299 64033444 -37839725 - MLT1J1 LTR MaLR -290 156 1 291 276 26 0 chr13 64033587 64033663 -37839506 + MIR SINE MIR 67 144 -64 25 65 0 0 chr13 64034768 64034814 -37838355 + AT_rich Low_complexity Low_complexity 1 46 0 257 313 30 23 chr13 64037012 64037143 -37836026 - MIR SINE MIR -19 243 112 602 254 0 44 chr13 64037150 64037331 -37835838 - MIR SINE MIR 0 262 90 283 332 84 16 chr13 64037523 64037713 -37835456 - MIR SINE MIR -20 242 40 2034 131 0 29 chr13 64038219 64038525 -37834644 + AluSq SINE Alu 3 299 -14 795 271 72 77 chr13 64039469 64039982 -37833187 - MLT1H LTR MaLR -14 535 18 449 303 71 20 chr13 64040218 64040416 -37832753 - MIR SINE MIR -32 230 23 239 282 86 34 chr13 64040761 64040878 -37832291 - L2 LINE L2 -9 3304 3182 400 214 0 34 chr13 64041679 64041768 -37831401 + MIR3 SINE MIR 121 206 -2 524 301 80 0 chr13 64043379 64043555 -37829614 - MIR SINE MIR -10 252 63 416 272 63 137 chr13 64044358 64044737 -37828432 - L2 LINE L2 -50 3263 2913 7543 27 0 0 chr13 64044930 64046054 -37827115 - L1PA3 LINE L1 -3 6152 5026 9128 25 4 2 chr13 64046054 64047145 -37826024 + L1P LINE L1 3370 4462 -1684 683 43 0 32 chr13 64048058 64048152 -37825017 + L1MA3 LINE L1 5751 5841 -464 * 1998 159 75 63 chr13 64048125 64048616 -37824553 - L1MB7 LINE L1 -145 6039 5543 733 303 99 29 chr13 64048595 64049208 -37823961 - L1MEd LINE L1 -4954 1165 510 * 225 256 56 50 chr13 64049236 64049396 -37823773 - L1MEd LINE L1 -4910 1209 1049 28 71 0 0 chr13 64049415 64049471 -37823698 + AT_rich Low_complexity Low_complexity 1 56 0 5720 171 4 12 chr13 64050087 64050777 -37822392 - L1MA4 LINE L1 -1 6299 5605 1862 148 31 57 chr13 64050777 64051162 -37822007 + THE1C LTR MaLR 1 375 0 5720 171 4 12 chr13 64051162 64052199 -37820970 - L1MA4 LINE L1 -695 5605 4586 302 257 207 36 chr13 64053394 64053534 -37819635 - MIR SINE MIR -31 231 68 192 125 0 0 chr13 64053830 64053862 -37819307 + (T)n Simple_repeat Simple_repeat 1 32 0 321 131 0 0 chr13 64054741 64054802 -37818367 + (TC)n Simple_repeat Simple_repeat 2 62 0 837 250 90 16 chr13 64056649 64056893 -37816276 + MIR SINE MIR 1 262 0 254 374 84 0 chr13 64057015 64057122 -37816047 - L2 LINE L2 -39 3233 3118 246 263 38 0 chr13 64057419 64057499 -37815670 + GA-rich Low_complexity Low_complexity 2 84 0 306 0 0 0 chr13 64059157 64059191 -37813978 + (TG)n Simple_repeat Simple_repeat 1 34 0 513 338 59 15 chr13 64059865 64060069 -37813100 - MIR SINE MIR -42 220 8 4880 66 5 0 chr13 64060138 64060774 -37812395 + L1PA7 LINE L1 5516 6154 0 280 261 31 0 chr13 64060979 64061044 -37812125 - MIR SINE MIR -3 259 193 707 249 23 12 chr13 64061044 64061217 -37811952 + MER8 DNA MER2_type 1 175 -64 318 206 14 14 chr13 64061251 64061324 -37811845 - Tigger2 DNA MER2_type -2645 73 1 416 268 0 21 chr13 64061338 64061435 -37811734 - MIR SINE MIR -162 100 6 218 301 119 42 chr13 64062539 64062682 -37810487 - L2 LINE L2 -4 3309 3156 654 333 9 5 chr13 64062712 64062922 -37810247 - MIR SINE MIR -21 241 31 3885 105 2 18 chr13 64063006 64063569 -37809600 + MER41A LTR ERV1 1 554 0 192 351 31 70 chr13 64063594 64063822 -37809347 - L2 LINE L2 -209 3063 2845 914 134 85 0 chr13 64063904 64064068 -37809101 + MER5B DNA MER1_type 1 178 0 830 238 0 21 chr13 64064637 64064826 -37808343 + AluJb SINE Alu 127 311 -1 210 330 11 23 chr13 64065097 64065185 -37807984 - L2 LINE L2 -678 2636 2550 235 209 33 44 chr13 64065408 64065499 -37807670 + HAL1b LINE L1 1187 1276 -72 428 210 3 52 chr13 64066250 64066384 -37806785 + L1PB4 LINE L1 6038 6165 -1 806 278 32 24 chr13 64066411 64066659 -37806510 + MIR SINE MIR 11 260 -2 2299 96 3 0 chr13 64066884 64067187 -37805982 - AluSp SINE Alu -9 304 1 383 253 40 16 chr13 64067945 64068105 -37805064 - MLT1H LTR MaLR -2 547 397 25 0 0 0 chr13 64070135 64070160 -37803009 + AT_rich Low_complexity Low_complexity 1 25 0 265 209 68 0 chr13 64071678 64071752 -37801417 + MIR SINE MIR 83 160 -63 208 255 21 0 chr13 64075325 64075372 -37797797 + L2 LINE L2 2582 2629 -685 1647 143 25 45 chr13 64075603 64075917 -37797252 - AluSx SINE Alu -4 308 1 339 25 0 0 chr13 64076046 64076086 -37797083 + (TG)n Simple_repeat Simple_repeat 1 40 0 237 341 71 0 chr13 64076141 64076226 -37796943 + L2 LINE L2 2715 2805 -509 230 155 155 0 chr13 64076269 64076327 -37796842 + L2 LINE L2 2911 2977 -336 300 154 0 0 chr13 64076370 64076422 -37796747 + A-rich Low_complexity Low_complexity 1 52 0 459 292 152 23 chr13 64076422 64076679 -37796490 + L2 LINE L2 3023 3312 -1 399 297 173 10 chr13 64076678 64076880 -37796289 + MIR SINE MIR 21 255 -7 * 224 398 28 0 chr13 64077156 64077264 -37795905 - MIR SINE MIR -63 145 35 441 339 69 5 chr13 64077406 64077624 -37795545 + MIR SINE MIR 15 246 -16 1335 187 18 5 chr13 64077843 64078139 -37795030 - MER2 DNA MER2_type -5 340 2 1926 109 71 24 chr13 64078824 64079118 -37794051 - AluSg SINE Alu -2 308 1 261 302 12 0 chr13 64079316 64079402 -37793767 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 243 215 13 13 chr13 64079516 64079595 -37793574 + (TA)n Simple_repeat Simple_repeat 2 80 0 24 103 0 0 chr13 64079793 64079880 -37793289 + AT_rich Low_complexity Low_complexity 1 87 0 22 0 0 0 chr13 64080705 64080727 -37792442 + AT_rich Low_complexity Low_complexity 1 22 0 686 215 194 0 chr13 64082114 64082305 -37790864 + MIR SINE MIR 8 235 -27 5459 231 31 61 chr13 64084813 64085436 -37787733 + L1MC4a LINE L1 4781 5421 -725 2380 82 13 0 chr13 64085436 64085741 -37787428 + AluSp SINE Alu 1 309 -4 5459 231 31 61 chr13 64085741 64086993 -37786176 + L1MC4a LINE L1 5421 5255 -891 222 118 0 0 chr13 64086993 64087027 -37786142 + (TG)n Simple_repeat Simple_repeat 1 34 0 5459 231 31 61 chr13 64087027 64087168 -37786001 + L1MC4a LINE L1 5254 5398 -748 1990 140 7 3 chr13 64088754 64089061 -37784108 + AluSx SINE Alu 1 308 -4 750 258 75 43 chr13 64091618 64092191 -37780978 - HAL1 LINE L1 -2 2505 1883 23 54 0 0 chr13 64092226 64092263 -37780906 + AT_rich Low_complexity Low_complexity 1 37 0 215 248 138 64 chr13 64092763 64092872 -37780297 + L2 LINE L2 3156 3272 0 341 341 0 43 chr13 64092909 64093073 -37780096 + L3 LINE CR1 600 756 -821 236 313 61 9 chr13 64094049 64094164 -37779005 + MIR SINE MIR 82 202 -60 185 384 12 12 chr13 64094470 64094556 -37778613 + L2 LINE L2 3186 3271 -1 213 39 0 0 chr13 64095805 64095831 -37777338 + (GA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr13 64096002 64096030 -37777139 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 64096240 64096262 -37776907 + AT_rich Low_complexity Low_complexity 1 22 0 223 246 0 0 chr13 64096381 64096438 -37776731 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 795 246 103 74 chr13 64097670 64098060 -37775109 - MLT1J LTR MaLR -3 508 108 486 358 66 75 chr13 64098999 64099466 -37773703 + L2 LINE L2 2809 3271 -1 1689 177 7 0 chr13 64101058 64101493 -37771676 + AluJb SINE Alu 3 439 0 234 91 0 0 chr13 64101496 64101529 -37771640 + (AGGGGG)n Simple_repeat Simple_repeat 2 34 0 23 54 0 0 chr13 64102800 64102837 -37770332 + AT_rich Low_complexity Low_complexity 1 37 0 267 190 0 0 chr13 64102875 64102933 -37770236 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2073 134 0 0 chr13 64103008 64103300 -37769869 - AluSx SINE Alu -18 294 3 863 330 179 21 chr13 64103886 64104611 -37768558 - L3 LINE CR1 -84 1493 654 426 287 168 17 chr13 64104869 64105103 -37768066 + L2 LINE L2 2778 3039 -274 2371 111 14 8 chr13 64105103 64105456 -37767713 - THE1A LTR MaLR 0 355 1 248 287 154 21 chr13 64105779 64105922 -37767247 + L2 LINE L2 1783 1944 -1370 529 251 0 32 chr13 64106286 64106432 -37766737 - MLT1H LTR MaLR -362 187 3 279 349 52 35 chr13 64106918 64107090 -37766079 - L2 LINE L2 -6 3307 3133 401 355 66 58 chr13 64107289 64107700 -37765469 - L2 LINE L2 -352 2962 2549 193 321 0 62 chr13 64107698 64107779 -37765390 - L2 LINE L2 0 3272 3197 * 521 192 135 0 chr13 64109336 64109440 -37763729 - FLAM_A SINE Alu -9 133 16 286 346 150 0 chr13 64110386 64110519 -37762650 + MIR SINE MIR 20 172 -90 21 71 0 0 chr13 64112958 64113000 -37760169 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr13 64113479 64113522 -37759647 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 64113684 64113740 -37759429 + AT_rich Low_complexity Low_complexity 1 56 0 396 270 32 24 chr13 64115484 64115610 -37757559 - MIR SINE MIR -1 261 135 1808 132 32 48 chr13 64117262 64117573 -37755596 - AluSx SINE Alu -6 306 1 1704 211 59 3 chr13 64117635 64117972 -37755197 - MLT1A1 LTR MaLR -6 359 4 353 294 0 0 chr13 64118133 64118218 -37754951 - MIR3 SINE MIR -28 180 96 1805 223 108 49 chr13 64118218 64118809 -37754360 + MLT1E2 LTR MaLR 1 626 0 358 74 0 0 chr13 64119199 64119253 -37753916 + L1MA3 LINE L1 6252 6305 0 2185 216 51 59 chr13 64121665 64122275 -37750894 + MER77 LTR ERV1 1 605 0 338 259 9 23 chr13 64122291 64122419 -37750750 - L1M4 LINE L1 -297 5824 5705 298 240 83 23 chr13 64122463 64122644 -37750525 - L1M4 LINE L1 -734 5430 5282 198 0 0 0 chr13 64123241 64123263 -37749906 + (GA)n Simple_repeat Simple_repeat 1 22 0 183 80 0 0 chr13 64123866 64123891 -37749278 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 31 26 0 0 chr13 64124368 64124406 -37748763 + AT_rich Low_complexity Low_complexity 1 38 0 520 242 19 85 chr13 64124629 64124889 -37748280 - L1ME LINE L1 -349 5772 5530 5380 128 6 2 chr13 64125088 64125914 -37747255 - L1PB3 LINE L1 -7 6147 5319 1002 195 25 16 chr13 64126112 64126387 -37746782 - L1PB3 LINE L1 -850 5304 5028 3108 121 68 8 chr13 64126462 64126960 -37746209 - LTR26 LTR ERV1 -75 528 1 1855 182 54 26 chr13 64126962 64127144 -37746025 - L1MC/D LINE L1 -703 5630 5454 2134 73 0 0 chr13 64127144 64127435 -37745734 - AluY SINE Alu 0 314 24 1855 182 54 26 chr13 64127435 64127878 -37745291 - L1MC/D LINE L1 -879 5454 4975 455 181 11 21 chr13 64127891 64127985 -37745184 + MLT2C2 LTR ERVL 121 213 -251 368 150 0 17 chr13 64127980 64128040 -37745129 + MSTC LTR MaLR 305 363 -65 * 2359 58 14 3 chr13 64128043 64128338 -37744831 - AluY SINE Alu -13 298 1 323 319 96 75 chr13 64128409 64129024 -37744145 + L2 LINE L2 2078 2705 -609 425 253 42 6 chr13 64129041 64129207 -37743962 + (TA)n Simple_repeat Simple_repeat 1 172 0 1694 229 108 32 chr13 64129552 64130110 -37743059 + MLT1E2 LTR MaLR 27 626 0 216 279 29 0 chr13 64130156 64130224 -37742945 + (TGGA)n Simple_repeat Simple_repeat 1 70 0 432 255 31 115 chr13 64131391 64131488 -37741681 + MIR SINE MIR 74 149 -113 673 112 0 0 chr13 64131488 64131586 -37741583 - HY3 scRNA scRNA -3 98 1 432 255 31 115 chr13 64131586 64131680 -37741489 + MIR SINE MIR 149 249 -13 2065 167 5 0 chr13 64181695 64182067 -37691102 + L1MC3 LINE L1 7401 7774 -11 290 286 92 14 chr13 64182817 64182944 -37690225 + MIR SINE MIR 30 129 -79 2127 235 119 137 chr13 64182977 64183199 -37689970 - L2 LINE L2 -4 3309 3085 2177 106 0 3 chr13 64183199 64183522 -37689647 - AluSx SINE Alu 0 322 1 2120 123 13 0 chr13 64183522 64183694 -37689475 - AluSq SINE Alu -8 305 126 482 0 0 17 chr13 64183694 64183753 -37689416 + (TTTTG)n Simple_repeat Simple_repeat 4 61 0 2120 123 13 0 chr13 64183753 64183881 -37689288 - AluSq SINE Alu -187 126 1 2127 235 119 137 chr13 64183881 64184769 -37688400 - L2 LINE L2 -227 3086 2184 2224 104 17 0 chr13 64184769 64185068 -37688101 + AluSx SINE Alu 7 310 -2 2127 235 119 137 chr13 64185068 64185366 -37687803 - L2 LINE L2 -1129 2184 1882 678 194 7 7 chr13 64185366 64185505 -37687664 + L1MD3 LINE L1 7846 7984 -11 2127 235 119 137 chr13 64185505 64186017 -37687152 - L2 LINE L2 -1431 1882 1294 1472 217 0 0 chr13 64186838 64187119 -37686050 + AluJo SINE Alu 2 282 -30 25 0 0 0 chr13 64187119 64187144 -37686025 + AT_rich Low_complexity Low_complexity 1 25 0 229 213 0 82 chr13 64190129 64190190 -37682979 + MIR SINE MIR 38 93 -115 606 233 93 20 chr13 64190249 64190399 -37682770 - MIR SINE MIR -92 170 10 222 91 0 0 chr13 64190506 64190539 -37682630 + (ATTG)n Simple_repeat Simple_repeat 2 34 0 293 83 42 0 chr13 64190539 64190587 -37682582 + CT-rich Low_complexity Low_complexity 1 50 0 1217 49 5 32 chr13 64190587 64190772 -37682397 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3625 143 38 3 chr13 64193181 64193808 -37679361 + L1MC1 LINE L1 5677 6325 -8 715 177 14 0 chr13 64193808 64193949 -37679220 + L1MA5 LINE L1 6126 6268 -32 258 221 48 67 chr13 64194539 64194643 -37678526 + L2 LINE L2 3167 3268 -4 231 146 0 0 chr13 64194646 64194687 -37678482 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 223 241 69 0 chr13 64194703 64194761 -37678408 - MIR SINE MIR -63 199 138 215 250 12 25 chr13 64195856 64195936 -37677233 - MIR SINE MIR -48 214 136 364 303 101 8 chr13 64196014 64196133 -37677036 - MIR SINE MIR -121 141 12 236 240 133 0 chr13 64197672 64197747 -37675422 + MIR SINE MIR 158 242 -20 1125 219 125 66 chr13 64197769 64197965 -37675204 + MLT1C LTR MaLR 2 185 -282 2521 70 0 3 chr13 64197965 64198277 -37674892 + AluSq SINE Alu 1 311 -2 1125 219 125 66 chr13 64198277 64198519 -37674650 + MLT1C LTR MaLR 185 466 -1 300 175 12 62 chr13 64198621 64198701 -37674468 + L2 LINE L2 3229 3304 -9 249 83 0 0 chr13 64198707 64198743 -37674426 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 208 293 0 35 chr13 64198784 64198842 -37674327 - L2 LINE L2 -8 3264 3209 21 0 0 0 chr13 64199538 64199559 -37673610 + AT_rich Low_complexity Low_complexity 1 21 0 611 301 111 14 chr13 64201157 64201516 -37671653 - L1MC4 LINE L1 -547 7495 7102 2218 99 0 56 chr13 64201518 64201842 -37671327 + AluY SINE Alu 1 306 -5 463 273 55 0 chr13 64201927 64202037 -37671132 - MIR SINE MIR -111 151 36 22 35 0 0 chr13 64202781 64202810 -37670359 + AT_rich Low_complexity Low_complexity 1 29 0 466 291 7 7 chr13 64203526 64203667 -37669502 + MIR SINE MIR 76 216 -46 387 281 43 49 chr13 64204752 64204937 -37668232 + MIR SINE MIR 23 206 -56 21 89 0 0 chr13 64205586 64205642 -37667527 + AT_rich Low_complexity Low_complexity 1 56 0 220 308 13 13 chr13 64205770 64205848 -37667321 - L3b LINE CR1 -258 1325 1248 366 23 0 0 chr13 64205959 64206002 -37667167 + (TC)n Simple_repeat Simple_repeat 1 43 0 209 255 0 0 chr13 64206002 64206049 -37667120 + C-rich Low_complexity Low_complexity 3 49 0 647 238 40 5 chr13 64206064 64206261 -37666908 - MLT1E LTR MaLR -361 206 3 214 250 158 0 chr13 64206471 64206547 -37666622 - L2 LINE L2 -26 3287 3200 2884 3 0 0 chr13 64207587 64207898 -37665271 + AluYa5 SINE Alu 1 311 0 2067 137 0 0 chr13 64209765 64210064 -37663105 - AluSg SINE Alu -11 299 1 632 271 136 0 chr13 64210756 64210955 -37662214 - MIR SINE MIR -35 227 2 24 32 0 0 chr13 64210975 64211006 -37662163 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 64215933 64215964 -37657205 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 0 0 chr13 64216225 64216259 -37656910 + (TC)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr13 64216388 64216411 -37656758 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr13 64217330 64217368 -37655801 + AT_rich Low_complexity Low_complexity 1 38 0 1167 83 6 11 chr13 64218902 64219082 -37654087 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 249 33 0 0 chr13 64219373 64219403 -37653766 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 64220105 64220126 -37653043 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr13 64220199 64220238 -37652931 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 0 0 0 chr13 64220817 64220845 -37652324 + (T)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr13 64222709 64222731 -37650438 + (T)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr13 64223974 64223999 -37649170 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr13 64224309 64224339 -37648830 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr13 64225258 64225283 -37647886 + (TG)n Simple_repeat Simple_repeat 1 25 0 204 150 0 25 chr13 64225299 64225339 -37647830 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr13 64226143 64226168 -37647001 + (CA)n Simple_repeat Simple_repeat 2 26 0 205 143 20 20 chr13 64233091 64233140 -37640029 + A-rich Low_complexity Low_complexity 5 53 0 32 26 0 0 chr13 64233689 64233728 -37639441 + GC_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr13 64233947 64233987 -37639182 + GC_rich Low_complexity Low_complexity 1 40 0 201 39 0 0 chr13 64233987 64234013 -37639156 + (CTG)n Simple_repeat Simple_repeat 3 28 0 375 78 0 0 chr13 64234467 64234518 -37638651 + (TG)n Simple_repeat Simple_repeat 2 52 0 360 0 0 0 chr13 64235079 64235119 -37638050 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr13 64235344 64235368 -37637801 + AT_rich Low_complexity Low_complexity 1 24 0 214 250 113 73 chr13 64236819 64236943 -37636226 - L2 LINE L2 -5 3267 3139 557 143 61 31 chr13 64241832 64241930 -37631239 + AluJb SINE Alu 201 301 -11 230 327 161 18 chr13 64242016 64242184 -37630985 + MIR SINE MIR 5 196 -66 1471 195 73 42 chr13 64242639 64242841 -37630328 - MLT1A1 LTR MaLR 0 365 146 2138 104 17 3 chr13 64242841 64243138 -37630031 - AluY SINE Alu -9 302 2 1471 195 73 42 chr13 64243138 64243289 -37629880 - MLT1A1 LTR MaLR -219 146 1 2219 102 10 0 chr13 64243479 64243783 -37629386 - AluSp SINE Alu -6 307 1 393 167 15 0 chr13 64243880 64243946 -37629223 - MER58 DNA MER1_type 0 2420 2354 * 545 233 61 0 chr13 64243935 64244098 -37629071 - MER58 DNA MER1_type -116 225 53 1138 198 74 4 chr13 64244147 64244390 -37628779 + AluJo SINE Alu 1 260 -52 2112 98 0 7 chr13 64244470 64244746 -37628423 + AluSq SINE Alu 24 297 -16 180 0 0 0 chr13 64245833 64245853 -37627316 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 207 267 0 0 chr13 64249110 64249155 -37624014 - L3 LINE CR1 -1 1576 1532 24 53 0 0 chr13 64249848 64249886 -37623283 + AT_rich Low_complexity Low_complexity 1 38 0 338 323 68 0 chr13 64250208 64250341 -37622828 + L2 LINE L2 3167 3308 -5 190 293 69 0 chr13 64251400 64251458 -37621711 + MIR SINE MIR 64 125 -83 4741 180 48 24 chr13 64251706 64252694 -37620475 + Tigger6a DNA MER2_type 8 1018 -65 1148 184 18 14 chr13 64252699 64252917 -37620252 + AluJo SINE Alu 13 231 -81 22 0 0 0 chr13 64253792 64253814 -37619355 + AT_rich Low_complexity Low_complexity 1 22 0 412 262 49 8 chr13 64253931 64254053 -37619116 - MIR SINE MIR -17 245 119 479 125 0 100 chr13 64254996 64255076 -37618093 - AluJ/FRAM SINE Alu -21 291 220 2191 68 4 0 chr13 64257313 64257577 -37615592 + AluY SINE Alu 1 265 -46 180 0 0 0 chr13 64257837 64257857 -37615312 + (A)n Simple_repeat Simple_repeat 1 20 0 3389 89 9 0 chr13 64257857 64258305 -37614864 - L1PA8A LINE L1 -29 6102 5651 267 269 93 78 chr13 64258438 64258631 -37614538 - L2 LINE L2 0 3313 3118 745 287 51 13 chr13 64258639 64258876 -37614293 - MIR SINE MIR -16 246 1 323 298 189 36 chr13 64258928 64259300 -37613869 - L2 LINE L2 -222 3091 2636 317 254 15 0 chr13 64259283 64259350 -37613819 - MIR SINE MIR -187 75 8 * 198 336 176 15 chr13 64260549 64260680 -37612489 + L2 LINE L2 2938 3089 -183 449 255 168 61 chr13 64260792 64260987 -37612182 - L1MC5 LINE L1 -28 7933 7760 1892 154 26 100 chr13 64260987 64261377 -37611792 + MLT1A1 LTR MaLR 1 361 -4 449 255 168 61 chr13 64261377 64261695 -37611474 - L1MC5 LINE L1 -201 7760 7411 1084 220 176 28 chr13 64262605 64262928 -37610241 + MLT1B LTR MaLR 20 390 0 2611 48 0 3 chr13 64264314 64264663 -37608506 + AluY SINE Alu 1 348 0 356 173 0 0 chr13 64264799 64264887 -37608282 - Alu SINE Alu -251 51 5 392 258 47 16 chr13 64264887 64265015 -37608154 + MIR SINE MIR 47 178 -84 288 53 0 0 chr13 64266032 64266070 -37607099 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 1862 161 11 0 chr13 64266071 64266356 -37606813 - AluSx SINE Alu -24 288 1 5708 12 0 0 chr13 64269652 64270297 -37602872 + L1PA2 LINE L1 5510 6154 -1 977 200 8 17 chr13 64270718 64270916 -37602253 + MER2 DNA MER2_type 16 284 -61 21 0 0 0 chr13 64270916 64270937 -37602232 + AT_rich Low_complexity Low_complexity 1 21 0 977 200 8 17 chr13 64270937 64270999 -37602170 + MER2 DNA MER2_type 284 345 0 1990 125 0 7 chr13 64271018 64271298 -37601871 + AluSx SINE Alu 17 294 -18 21 36 0 0 chr13 64272307 64272335 -37600834 + AT_rich Low_complexity Low_complexity 1 28 0 2396 47 10 20 chr13 64273088 64273385 -37599784 + AluY SINE Alu 1 294 -17 2375 68 3 3 chr13 64273991 64274286 -37598883 + AluSp SINE Alu 1 295 -18 328 351 102 50 chr13 64274578 64275142 -37598027 + L2 LINE L2 2576 3171 -101 189 330 44 44 chr13 64275814 64275905 -37597264 - L3 LINE CR1 -2 1575 1485 2268 86 3 0 chr13 64276145 64276435 -37596734 - AluSx SINE Alu -21 291 1 266 281 67 22 chr13 64276512 64276601 -37596568 - MIR SINE MIR -84 178 86 630 297 41 20 chr13 64276658 64276853 -37596316 + L2 LINE L2 3109 3307 -6 3911 200 32 50 chr13 64277287 64278273 -37594896 + LTR5 LTR ERVK 1 969 0 363 23 0 0 chr13 64278765 64278809 -37594360 + (CA)n Simple_repeat Simple_repeat 2 45 0 2374 87 3 0 chr13 64279117 64279417 -37593752 + AluSp SINE Alu 1 301 -12 2432 292 183 27 chr13 64279487 64280878 -37592291 - L2 LINE L2 -874 2440 832 210 275 92 37 chr13 64280889 64280998 -37592171 + L2 LINE L2 2127 2241 -1073 432 265 121 23 chr13 64281020 64281235 -37591934 + MIR SINE MIR 13 248 -14 520 163 123 22 chr13 64281473 64281628 -37591541 - MER104 DNA Tc2 -8 172 2 1745 166 94 3 chr13 64283068 64283376 -37589793 - MER1B DNA MER1_type -1 336 1 870 189 51 46 chr13 64283654 64283871 -37589298 - MER20 DNA MER1_type 0 219 2 251 303 156 18 chr13 64283928 64284037 -37589132 - MIR SINE MIR -119 143 20 386 294 78 17 chr13 64284946 64285126 -37588043 + L3 LINE CR1 492 682 -895 289 298 62 43 chr13 64285123 64285284 -37587885 - L3 LINE CR1 -60 1517 1354 * 180 292 62 0 chr13 64285436 64285484 -37587685 - L3 LINE CR1 -453 1124 1074 499 294 49 87 chr13 64286623 64286787 -37586382 - MIR SINE MIR 0 262 110 2515 58 7 0 chr13 64286787 64287096 -37586073 + AluSp SINE Alu 1 311 -2 499 294 49 87 chr13 64287096 64287196 -37585973 - MIR SINE MIR -152 110 8 2300 74 43 7 chr13 64287270 64287569 -37585600 - AluSq SINE Alu -3 310 1 327 271 54 62 chr13 64287569 64287698 -37585471 + MIR SINE MIR 105 232 -30 303 93 0 0 chr13 64289781 64289824 -37583345 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1232 123 106 38 chr13 64290727 64290962 -37582207 - AluSx SINE Alu -14 298 48 576 125 0 10 chr13 64290975 64291071 -37582098 - AluJb SINE Alu -203 109 15 1086 123 22 0 chr13 64291071 64291250 -37581919 - L1MA6 LINE L1 -327 5973 5791 347 309 162 7 chr13 64292346 64292482 -37580687 - MIR3 SINE MIR -6 202 46 247 128 51 0 chr13 64293265 64293304 -37579865 - L2 LINE L2 -85 3228 3188 24 0 0 0 chr13 64293417 64293441 -37579728 + AT_rich Low_complexity Low_complexity 1 24 0 368 269 28 37 chr13 64293444 64293552 -37579617 - L2 LINE L2 0 3313 3207 236 224 0 17 chr13 64293550 64293608 -37579561 - L2 LINE L2 0 3313 3257 * 24 0 0 0 chr13 64293746 64293770 -37579399 + AT_rich Low_complexity Low_complexity 1 24 0 4860 105 27 41 chr13 64294275 64294626 -37578543 - LTR19C LTR ERV1 0 779 425 2361 74 7 10 chr13 64294626 64294936 -37578233 - AluSx SINE Alu -3 309 1 4860 105 27 41 chr13 64294936 64295372 -37577797 - LTR19C LTR ERV1 -354 425 3 961 205 35 47 chr13 64295375 64295653 -37577516 - HUERS-P3 LTR ERV1 0 8919 7168 183 80 0 0 chr13 64295805 64295830 -37577339 + (A)n Simple_repeat Simple_repeat 1 25 0 1015 204 0 5 chr13 64295844 64296045 -37577124 - HUERS-P3b LTR ERV1 -1361 3856 3657 252 0 0 0 chr13 64296047 64296075 -37577094 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1875 62 0 0 chr13 64296076 64296303 -37576866 - AluY SINE Alu -32 279 53 2303 65 3 10 chr13 64296407 64296716 -37576453 + AluY SINE Alu 1 307 -4 9214 176 35 56 chr13 64296717 64298329 -37574840 - HUERS-P3b LTR ERV1 -1069 6349 4964 2151 135 0 3 chr13 64298329 64298640 -37574529 + AluSg SINE Alu 1 310 0 9214 176 35 56 chr13 64298640 64299797 -37573372 - HUERS-P3b LTR ERV1 -2454 4964 3784 543 101 0 0 chr13 64299798 64299877 -37573292 - LTR9 LTR ERV1 -533 79 1 * 1034 196 76 41 chr13 64299877 64300191 -37572978 + MLT1B LTR MaLR 48 372 -18 221 214 43 14 chr13 64300204 64300274 -37572895 + T-rich Low_complexity Low_complexity 2 73 0 700 345 29 23 chr13 64300660 64301045 -37572124 + MLT1I LTR MaLR 13 399 -10 1344 303 7 2 chr13 64301187 64301590 -37571579 + LTR16A LTR ERVL 46 450 0 283 228 22 0 chr13 64301764 64301856 -37571313 + GA-rich Low_complexity Low_complexity 1 94 0 353 333 33 33 chr13 64302098 64302251 -37570918 + MIR3 SINE MIR 33 185 -23 240 203 62 16 chr13 64303335 64303399 -37569770 - MER112 DNA MER1_type -11 249 183 195 184 0 0 chr13 64303892 64303930 -37569239 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1879 144 37 64 chr13 64304888 64305188 -37567981 + THE1B LTR MaLR 1 291 -73 2129 128 44 0 chr13 64305188 64305486 -37567683 - AluSx SINE Alu 0 312 2 1879 144 37 64 chr13 64305486 64305559 -37567610 + THE1B LTR MaLR 291 364 0 268 263 182 10 chr13 64305630 64305729 -37567440 - MIR SINE MIR -79 183 68 214 318 73 36 chr13 64305764 64305874 -37567295 - L2 LINE L2 -6 3266 3153 291 73 0 0 chr13 64306289 64306330 -37566839 + L1MA8 LINE L1 5911 5951 -340 826 188 0 0 chr13 64306334 64306472 -37566697 + FRAM SINE Alu 9 146 -30 180 111 0 0 chr13 64306475 64306502 -37566667 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1353 186 35 14 chr13 64306874 64307319 -37565850 - L1ME LINE L1 -564 5602 5144 1977 152 0 38 chr13 64307595 64307911 -37565258 - AluSx SINE Alu -8 304 1 647 303 26 106 chr13 64309144 64309530 -37563639 + L2 LINE L2 2899 3253 -19 1086 198 0 44 chr13 64309530 64309757 -37563412 + MER20 DNA MER1_type 3 219 0 1362 242 60 19 chr13 64313164 64313582 -37559587 - MER74B LTR ERVL -1 621 187 546 317 32 81 chr13 64313607 64313671 -37559498 + MER34 LTR ERV1 1 67 -475 3901 178 85 4 chr13 64313671 64314435 -37558734 + LTR1B LTR ERV1 1 826 0 546 317 32 81 chr13 64314435 64314903 -37558266 + MER34 LTR ERV1 67 507 -35 517 159 8 61 chr13 64314947 64315079 -37558090 - MER74B LTR ERVL -453 169 45 511 284 105 42 chr13 64315239 64315478 -37557691 - MIR SINE MIR 0 262 9 377 305 65 25 chr13 64316085 64316285 -37556884 + L3b LINE CR1 1205 1412 -171 2079 139 3 0 chr13 64316861 64317155 -37556014 - AluSx SINE Alu -17 295 1 754 240 47 12 chr13 64317229 64317487 -37555682 - L1ME LINE L1 -2060 4086 3820 306 261 45 0 chr13 64317521 64317632 -37555537 - L1ME4a LINE L1 -11 6110 5995 21 36 0 0 chr13 64317750 64317778 -37555391 + AT_rich Low_complexity Low_complexity 1 28 0 302 360 44 0 chr13 64317869 64318005 -37555164 - L1ME LINE L1 -392 5729 5588 1178 192 47 0 chr13 64318047 64318281 -37554888 - L1MC1 LINE L1 -6 6327 6083 254 227 79 96 chr13 64318578 64318807 -37554362 - L1M4 LINE L1 -1854 4292 4068 646 71 0 20 chr13 64319454 64319552 -37553617 - AluSg/x SINE Alu 0 309 214 1960 108 0 0 chr13 64319552 64319812 -37553357 - AluSx SINE Alu -52 260 1 182 364 0 0 chr13 64320033 64320099 -37553070 + MIR SINE MIR 2 67 -195 21 0 0 0 chr13 64321616 64321637 -37551532 + AT_rich Low_complexity Low_complexity 1 21 0 335 301 44 29 chr13 64322033 64322169 -37551000 - MIR SINE MIR -76 186 49 24 32 0 0 chr13 64323368 64323399 -37549770 + AT_rich Low_complexity Low_complexity 1 31 0 317 288 0 0 chr13 64324391 64324464 -37548705 + L2 LINE L2 3241 3313 0 1176 242 135 8 chr13 64324749 64325133 -37548036 - L1ME2 LINE L1 -38 6126 5694 3288 201 33 48 chr13 64325142 64326118 -37547051 - L1MD2 LINE L1 -362 5997 5055 666 241 0 0 chr13 64326118 64326251 -37546918 - FLAM_A SINE Alu 0 133 1 3288 201 33 48 chr13 64326251 64326892 -37546277 - L1MD2 LINE L1 -1304 5055 4406 747 273 122 19 chr13 64327250 64327569 -37545600 + MLT1J LTR MaLR 52 403 -108 361 273 117 66 chr13 64327646 64327926 -37545243 - L1ME4a LINE L1 -173 5948 5684 2179 117 3 10 chr13 64327926 64328234 -37544935 + AluSx SINE Alu 1 306 -6 361 273 117 66 chr13 64328234 64328502 -37544667 - L1ME4a LINE L1 -437 5684 5372 26 30 0 0 chr13 64328799 64328832 -37544337 + AT_rich Low_complexity Low_complexity 1 33 0 1087 206 96 40 chr13 64328984 64329338 -37543831 - MLT1A2 LTR MaLR 0 374 1 398 331 24 44 chr13 64330819 64331067 -37542102 - MARNA DNA Mariner -165 421 179 23 33 0 0 chr13 64331589 64331619 -37541550 + AT_rich Low_complexity Low_complexity 1 30 0 1978 143 0 11 chr13 64331746 64332033 -37541136 + AluSx SINE Alu 1 284 -28 10621 96 2 3 chr13 64332035 64334319 -37538850 + L1PA8 LINE L1 3891 6172 0 3768 82 3 52 chr13 64334319 64334880 -37538289 + L1PA13 LINE L1 5601 6144 -19 453 351 107 18 chr13 64334966 64335191 -37537978 - MIR SINE MIR -16 246 2 221 274 0 36 chr13 64336051 64336135 -37537034 + L2 LINE L2 3143 3223 -90 275 284 257 0 chr13 64336199 64336308 -37536861 + L2 LINE L2 3136 3272 0 1700 164 7 30 chr13 64336846 64337151 -37536018 + AluJo SINE Alu 1 298 -14 3166 122 44 4 chr13 64337420 64337922 -37535247 - L1PA16 LINE L1 0 6166 5645 208 167 0 24 chr13 64338464 64338506 -37534663 + A-rich Low_complexity Low_complexity 5 45 0 675 152 24 81 chr13 64338960 64339170 -37533999 + L1MA9 LINE L1 6115 6312 0 253 254 32 0 chr13 64339243 64339306 -37533863 - L2 LINE L2 -11 3302 3238 2207 47 87 0 chr13 64339801 64340078 -37533091 - AluY SINE Alu -10 301 1 233 379 68 10 chr13 64340494 64340597 -37532572 - L2 LINE L2 -26 3246 3138 242 291 133 49 chr13 64340727 64340748 -37532421 + L2 LINE L2 3038 3056 -257 2121 107 0 27 chr13 64340748 64341048 -37532121 - AluSq SINE Alu -10 303 12 242 291 133 49 chr13 64341048 64341229 -37531940 + L2 LINE L2 3056 3257 -56 231 88 0 0 chr13 64341247 64341281 -37531888 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 732 116 0 130 chr13 64342091 64342237 -37530932 + FRAM SINE Alu 38 164 -12 22 56 0 0 chr13 64342963 64342999 -37530170 + AT_rich Low_complexity Low_complexity 1 36 0 261 304 36 45 chr13 64345278 64345390 -37527779 - L2 LINE L2 -25 3247 3137 2584 53 0 0 chr13 64345925 64346227 -37526942 - AluY SINE Alu -9 302 1 2949 169 36 81 chr13 64346587 64347112 -37526057 - L1MA9 LINE L1 -36 6276 5794 6427 118 80 14 chr13 64347112 64348095 -37525074 - Tigger3b DNA MER2_type -1798 1230 158 1515 185 3 50 chr13 64348095 64348393 -37524776 - AluJb SINE Alu -26 286 3 6427 118 80 14 chr13 64348393 64348563 -37524606 - Tigger3b DNA MER2_type -2870 158 1 2949 169 36 81 chr13 64348563 64348795 -37524374 - L1MA9 LINE L1 -518 5794 5553 283 145 29 29 chr13 64349129 64349198 -37523971 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 436 325 8 8 chr13 64349260 64349386 -37523783 + MER5A DNA MER1_type 63 188 -1 321 292 111 15 chr13 64349534 64349739 -37523430 - MIR SINE MIR -33 229 16 817 261 8 71 chr13 64350137 64350405 -37522764 + MIR SINE MIR 8 258 -4 225 0 0 0 chr13 64350616 64350641 -37522528 + (T)n Simple_repeat Simple_repeat 1 25 0 1791 149 32 56 chr13 64350805 64351147 -37522022 + MER1B DNA MER1_type 4 337 0 27 49 0 0 chr13 64351552 64351593 -37521576 + AT_rich Low_complexity Low_complexity 1 41 0 193 258 0 48 chr13 64352607 64352669 -37520500 - MIR SINE MIR -37 225 167 318 351 78 13 chr13 64352807 64352961 -37520208 - MIR SINE MIR -76 186 23 205 280 54 54 chr13 64353327 64353420 -37519749 - L2 LINE L2 -40 3273 3181 4327 257 106 21 chr13 64353574 64355194 -37517975 + L1ME1 LINE L1 37 1794 -4602 194 310 0 0 chr13 64355207 64355265 -37517904 - MIR SINE MIR -52 210 153 2430 260 15 16 chr13 64355310 64356134 -37517035 + L1ME1 LINE L1 3208 4030 -2185 1395 191 8 0 chr13 64356137 64356373 -37516796 + AluJo SINE Alu 1 238 -74 1181 239 81 26 chr13 64356498 64356954 -37516215 + L1ME1 LINE L1 4020 4500 -1715 1148 235 79 72 chr13 64356967 64357422 -37515747 + L1ME1 LINE L1 5772 6229 -6 29 28 0 0 chr13 64357469 64357505 -37515664 + AT_rich Low_complexity Low_complexity 1 36 0 371 277 16 65 chr13 64358053 64358237 -37514932 + MER5B DNA MER1_type 1 175 -3 225 320 9 105 chr13 64358287 64358332 -37514837 + MIR SINE MIR 65 113 -149 707 223 0 58 chr13 64358332 64358520 -37514649 - MER5B DNA MER1_type -1 177 1 225 320 9 105 chr13 64358520 64358693 -37514476 + MIR SINE MIR 113 262 0 312 27 0 0 chr13 64359074 64359111 -37514058 + (TG)n Simple_repeat Simple_repeat 2 38 0 1697 190 31 20 chr13 64359707 64360059 -37513110 - MLT1A1 LTR MaLR 0 365 10 329 270 10 30 chr13 64360066 64360166 -37513003 - MIR SINE MIR -101 161 64 1705 182 0 29 chr13 64360346 64360659 -37512510 - AluJb SINE Alu -8 304 1 209 130 0 43 chr13 64360672 64360718 -37512451 + (TGGGGG)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr13 64360803 64360823 -37512346 + (TTTTC)n Simple_repeat Simple_repeat 5 24 0 1999 112 0 0 chr13 64360828 64361096 -37512073 - AluSq SINE Alu -45 268 1 21 36 0 0 chr13 64361749 64361777 -37511392 + AT_rich Low_complexity Low_complexity 1 28 0 1590 273 144 31 chr13 64361849 64362417 -37510752 - L2 LINE L2 -9 3304 2801 4758 134 67 30 chr13 64362417 64363288 -37509881 + MER4D LTR ERV1 1 903 0 1590 273 144 31 chr13 64363288 64363731 -37509438 - L2 LINE L2 -512 2801 2173 2506 159 39 37 chr13 64364038 64364547 -37508622 - LTR54 LTR ERV1 0 510 1 3835 152 17 17 chr13 64364848 64365558 -37507611 + MER67C LTR ERV1 1 710 0 1181 173 10 0 chr13 64365849 64366046 -37507123 - MLT1B LTR MaLR -19 371 173 924 144 23 46 chr13 64366072 64366246 -37506923 - MLT1B LTR MaLR -211 179 10 486 262 65 83 chr13 64367932 64368161 -37505008 + MLT1K LTR MaLR 185 409 -179 243 0 0 0 chr13 64368205 64368232 -37504937 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 279 0 0 0 chr13 64368231 64368262 -37504907 + (GA)n Simple_repeat Simple_repeat 2 32 0 545 160 34 42 chr13 64368283 64368402 -37504767 + FRAM SINE Alu 51 168 -8 1760 179 0 10 chr13 64368753 64369044 -37504125 - AluJo SINE Alu -24 288 1 488 325 13 26 chr13 64369458 64369612 -37503557 - MER5A DNA MER1_type -1 188 37 344 285 7 99 chr13 64369847 64369998 -37503171 - MIR3 SINE MIR -34 174 38 558 281 54 30 chr13 64370283 64370486 -37502683 - MIR SINE MIR -51 211 4 755 299 96 28 chr13 64370490 64370854 -37502315 + L3 LINE CR1 683 1071 -506 240 263 0 0 chr13 64371673 64371730 -37501439 + CT-rich Low_complexity Low_complexity 5 61 0 194 241 19 19 chr13 64375141 64375195 -37497974 + MER5B DNA MER1_type 4 57 -121 2080 129 0 0 chr13 64375212 64375492 -37497677 + AluSx SINE Alu 10 289 -23 1431 132 164 45 chr13 64375679 64375990 -37497179 - MSTA LTR MaLR -2 426 79 1532 148 8 8 chr13 64376014 64376250 -37496919 - AluJb SINE Alu -76 236 1 1189 168 60 74 chr13 64376476 64376828 -37496341 - Charlie1 DNA MER1_type -7 2754 2408 632 211 0 30 chr13 64376830 64376963 -37496206 - FLAM_A SINE Alu -12 130 2 321 273 0 0 chr13 64376964 64377041 -37496128 - Charlie1 DNA MER1_type -343 2418 2342 249 292 46 0 chr13 64377038 64377103 -37496066 - Charlie1 DNA MER1_type -2690 71 4 * 185 301 212 0 chr13 64378329 64378442 -37494727 - MIR SINE MIR -6 256 120 336 311 106 45 chr13 64379071 64379335 -37493834 + L2 LINE L2 3031 3310 -3 785 288 17 9 chr13 64379355 64379588 -37493581 - MIR SINE MIR 0 262 28 3910 127 20 72 chr13 64379662 64380443 -37492726 - Tigger3(Golem) DNA MER2_type 0 3029 2289 681 213 0 0 chr13 64380433 64380555 -37492614 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 2126 132 114 30 chr13 64381433 64381609 -37491560 + MSTA LTR MaLR 1 161 -267 2288 89 7 0 chr13 64381609 64381901 -37491268 + AluSc SINE Alu 1 294 -15 2126 132 114 30 chr13 64381901 64382119 -37491050 + MSTA LTR MaLR 161 428 0 395 363 42 16 chr13 64382324 64382517 -37490652 - MIR SINE MIR -31 231 34 2112 172 21 5 chr13 64383803 64384187 -37488982 + MLT1B LTR MaLR 1 390 0 219 234 21 16 chr13 64384237 64384350 -37488819 + MER5A DNA MER1_type 9 175 -14 1838 166 3 16 chr13 64384363 64384676 -37488493 - AluJb SINE Alu -3 309 1 385 213 176 44 chr13 64384712 64384848 -37488321 - MLT1J2 LTR MaLR -4 545 392 266 260 10 29 chr13 64384857 64384961 -37488208 - MER113 DNA MER1_type? -247 274 173 438 251 30 30 chr13 64385117 64385284 -37487885 - MER113 DNA MER1_type? -353 168 2 211 305 30 61 chr13 64386113 64386244 -37486925 + L2 LINE L2 3163 3289 -24 306 0 0 0 chr13 64387791 64387825 -37485344 + (CA)n Simple_repeat Simple_repeat 2 35 0 3159 148 16 8 chr13 64388307 64388815 -37484354 + MER41E LTR ERV1 1 512 0 2230 93 3 3 chr13 64388874 64389174 -37483995 + AluSg SINE Alu 1 300 -10 21 0 0 0 chr13 64389306 64389327 -37483842 + AT_rich Low_complexity Low_complexity 1 21 0 513 270 108 7 chr13 64389584 64389732 -37483437 + MLT1I LTR MaLR 246 408 -1 1661 180 0 24 chr13 64389824 64390119 -37483050 + AluJo SINE Alu 1 288 -24 24 53 0 0 chr13 64390375 64390413 -37482756 + AT_rich Low_complexity Low_complexity 1 38 0 304 370 65 0 chr13 64390592 64390746 -37482423 + MIR3 SINE MIR 44 207 -1 396 325 43 0 chr13 64392153 64392270 -37480899 - L2 LINE L2 -15 3257 3136 272 232 32 42 chr13 64392273 64392368 -37480801 - MLT1J1 LTR MaLR 0 446 353 * 845 300 65 24 chr13 64392363 64392653 -37480516 - MLT1J2 LTR MaLR -117 333 32 3688 177 98 45 chr13 64392966 64393886 -37479283 - L1MD2 LINE L1 -32 6327 5359 24 0 0 0 chr13 64393955 64393979 -37479190 + AT_rich Low_complexity Low_complexity 1 24 0 321 330 110 0 chr13 64394181 64394299 -37478870 + L2 LINE L2 3136 3266 -6 352 291 63 29 chr13 64394338 64394513 -37478656 - MIR SINE MIR -18 244 64 642 201 104 0 chr13 64395538 64395692 -37477477 + MER104 DNA Tc2 8 177 -3 24 53 0 0 chr13 64396009 64396047 -37477122 + AT_rich Low_complexity Low_complexity 1 38 0 512 301 24 24 chr13 64396146 64396352 -37476817 + MLT1L LTR MaLR 114 319 -296 366 108 15 0 chr13 64396370 64396435 -37476734 + L1PB3 LINE L1 6088 6153 -1 26 30 0 0 chr13 64396522 64396555 -37476614 + AT_rich Low_complexity Low_complexity 1 33 0 479 268 66 35 chr13 64396591 64396789 -37476380 + MLT1L LTR MaLR 408 611 -4 826 282 122 53 chr13 64397357 64397793 -37475376 - MLT1K LTR MaLR -54 534 69 285 273 34 11 chr13 64397934 64398022 -37475147 - MIR SINE MIR -97 165 76 21 36 0 0 chr13 64398022 64398050 -37475119 + AT_rich Low_complexity Low_complexity 1 28 0 2115 128 0 3 chr13 64398050 64398346 -37474823 - AluSx SINE Alu -17 295 1 203 277 15 31 chr13 64398347 64398412 -37474757 - MIR SINE MIR -118 90 27 949 185 26 31 chr13 64398627 64398822 -37474347 - MER20 DNA MER1_type -4 215 22 185 295 148 0 chr13 64399294 64399355 -37473814 + MIR SINE MIR 60 129 -133 2149 132 41 8 chr13 64399534 64399897 -37473272 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr13 64400350 64400371 -37472798 + AT_rich Low_complexity Low_complexity 1 21 0 529 323 169 25 chr13 64401593 64402221 -37470948 - L2 LINE L2 -354 2960 2243 362 339 107 0 chr13 64406930 64407098 -37466071 + MIR3 SINE MIR 16 201 -7 230 237 13 0 chr13 64410248 64410324 -37462845 + CT-rich Low_complexity Low_complexity 3 79 0 260 276 103 11 chr13 64411127 64411214 -37461955 + L2 LINE L2 3219 3313 0 27 29 0 0 chr13 64413598 64413632 -37459537 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr13 64416995 64417017 -37456152 + AT_rich Low_complexity Low_complexity 1 22 0 330 263 131 17 chr13 64417697 64417872 -37455297 + MIR SINE MIR 59 253 -9 1636 153 0 71 chr13 64418104 64418412 -37454757 + AluJo SINE Alu 1 286 -26 304 319 26 17 chr13 64418865 64418981 -37454188 - L2 LINE L2 0 3313 3197 581 287 62 88 chr13 64419405 64419658 -37453511 - MIR SINE MIR -3 259 3 591 15 0 0 chr13 64420515 64420583 -37452586 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 916 320 83 14 chr13 64420600 64421157 -37452012 + L2 LINE L2 2152 2746 -568 218 318 33 102 chr13 64421199 64421444 -37451725 + L2 LINE L2 2826 3053 -219 21 0 0 0 chr13 64423019 64423040 -37450129 + AT_rich Low_complexity Low_complexity 1 21 0 269 219 27 14 chr13 64423176 64423249 -37449920 - L1M4 LINE L1 -887 5259 5186 3590 217 46 6 chr13 64423268 64424295 -37448874 - L1MB7 LINE L1 -14 6170 5107 423 265 96 0 chr13 64424620 64424756 -37448413 - MER20 DNA MER1_type -33 186 38 258 281 98 0 chr13 64424890 64424972 -37448197 + MIR SINE MIR 56 145 -117 641 262 52 0 chr13 64425070 64425242 -37447927 + MER20 DNA MER1_type 38 218 -1 22 35 0 0 chr13 64425358 64425387 -37447782 + AT_rich Low_complexity Low_complexity 1 29 0 222 336 10 10 chr13 64426033 64426137 -37447032 - L3 LINE CR1 -910 667 564 2237 140 72 8 chr13 64426391 64426791 -37446378 + MSTB LTR MaLR 1 426 0 1365 199 21 7 chr13 64427124 64427415 -37445754 - L1MC2 LINE L1 -4 6340 6046 14409 128 26 22 chr13 64427439 64429825 -37443344 - Tigger1 DNA MER2_type -23 2395 1 857 135 70 6 chr13 64429825 64429981 -37443188 - L1MC1 LINE L1 -289 6044 5879 1352 162 24 54 chr13 64429983 64430280 -37442889 - AluJb SINE Alu -1 311 24 2701 176 55 23 chr13 64430280 64430744 -37442425 - L1MC1 LINE L1 -470 5874 5387 1902 120 42 89 chr13 64430744 64430795 -37442374 - THE1B LTR MaLR 0 364 312 1683 109 0 5 chr13 64430795 64431054 -37442115 - AluSg/x SINE Alu 0 322 65 1902 120 42 89 chr13 64431054 64431383 -37441786 - THE1B LTR MaLR -52 312 1 2701 176 55 23 chr13 64431383 64431479 -37441690 - L1MC1 LINE L1 -957 5387 5296 1736 174 5 33 chr13 64431501 64431892 -37441277 - L1MA8 LINE L1 -1 7709 7330 3248 171 50 19 chr13 64431912 64432247 -37440922 - L1MA8 LINE L1 -743 6822 6499 2230 138 21 24 chr13 64432247 64432623 -37440546 - THE1C LTR MaLR 0 375 1 3248 171 50 19 chr13 64432623 64432991 -37440178 - L1MA8 LINE L1 -1066 6499 6097 11587 167 34 27 chr13 64432991 64433127 -37440042 + L1MA4 LINE L1 2868 3002 -3298 2269 117 0 0 chr13 64433127 64433425 -37439744 - AluSg SINE Alu -12 298 1 11587 167 34 27 chr13 64433425 64436697 -37436472 + L1MA4 LINE L1 3002 6296 -4 10130 200 44 48 chr13 64436705 64440253 -37432916 - L1MA8 LINE L1 -1455 6110 2562 2051 144 0 3 chr13 64440747 64441052 -37432117 - AluSx SINE Alu -8 304 1 362 188 163 129 chr13 64442212 64442334 -37430835 + MER3 DNA MER1_type 1 134 -75 1894 168 0 0 chr13 64442334 64442632 -37430537 - AluJb SINE Alu -14 298 1 362 188 163 129 chr13 64442632 64442711 -37430458 + MER3 DNA MER1_type 134 209 0 180 111 0 0 chr13 64443007 64443034 -37430135 + (TG)n Simple_repeat Simple_repeat 2 28 0 752 52 0 0 chr13 64443808 64443905 -37429264 + L1PA7 LINE L1 6057 6153 -1 592 265 103 10 chr13 64443966 64444170 -37428999 + MIR SINE MIR 6 228 -34 220 360 12 0 chr13 64444345 64444431 -37428738 - L2 LINE L2 0 3313 3227 2271 91 0 0 chr13 64447839 64448135 -37425034 + AluY SINE Alu 3 298 -13 198 278 49 90 chr13 64448211 64448355 -37424814 + MIR3 SINE MIR 6 143 -65 284 192 13 13 chr13 64448714 64448792 -37424377 + (TA)n Simple_repeat Simple_repeat 1 78 0 25 65 0 0 chr13 64448830 64448876 -37424293 + AT_rich Low_complexity Low_complexity 1 46 0 340 147 53 0 chr13 64448876 64449026 -37424143 + (TA)n Simple_repeat Simple_repeat 2 159 0 22 0 0 0 chr13 64449958 64449980 -37423189 + AT_rich Low_complexity Low_complexity 1 22 0 209 125 0 21 chr13 64451443 64451491 -37421678 + (TA)n Simple_repeat Simple_repeat 1 47 0 304 241 0 36 chr13 64451652 64451735 -37421434 + GA-rich Low_complexity Low_complexity 5 84 0 2409 56 0 13 chr13 64452583 64452888 -37420281 + AluY SINE Alu 1 301 -10 1278 241 90 28 chr13 64453154 64453589 -37419580 - MLT1C LTR MaLR 0 467 6 329 335 110 15 chr13 64453626 64453826 -37419343 - MIR SINE MIR -24 238 20 2409 66 3 16 chr13 64454455 64454772 -37418397 - L1PA13 LINE L1 -29 6134 5822 265 244 139 0 chr13 64455673 64455759 -37417410 + MIR SINE MIR 111 208 -54 21 57 0 0 chr13 64456681 64456716 -37416453 + AT_rich Low_complexity Low_complexity 1 35 0 279 54 0 0 chr13 64456829 64456866 -37416303 + (TG)n Simple_repeat Simple_repeat 2 38 0 318 305 38 33 chr13 64457641 64457854 -37415315 + MLT1K LTR MaLR 203 416 -172 722 175 110 0 chr13 64458102 64458256 -37414913 - L1PB4 LINE L1 -12 6144 5974 265 396 39 26 chr13 64459212 64459366 -37413803 - L2 LINE L2 0 3272 3117 238 388 0 0 chr13 64459573 64459653 -37413516 + L2 LINE L2 3193 3272 0 210 219 0 0 chr13 64459735 64459776 -37413393 + L2 LINE L2 3272 3312 -1 264 254 23 17 chr13 64459856 64460029 -37413140 + (TTTAA)n Simple_repeat Simple_repeat 4 177 0 215 227 0 0 chr13 64460151 64460195 -37412974 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 302 257 44 103 chr13 64460471 64460607 -37412562 + MER5A DNA MER1_type 55 182 -7 318 290 30 121 chr13 64460985 64461178 -37411991 + L3b LINE CR1 1271 1421 -162 1613 177 49 3 chr13 64461178 64461466 -37411703 - AluJb SINE Alu -11 301 1 318 290 30 121 chr13 64461466 64461610 -37411559 + L3b LINE CR1 1421 1577 -6 24 0 0 0 chr13 64462093 64462117 -37411052 + AT_rich Low_complexity Low_complexity 1 24 0 391 259 44 57 chr13 64462942 64463100 -37410069 + L2 LINE L2 3158 3313 0 250 333 111 0 chr13 64464013 64464121 -37409048 - MIR3 SINE MIR -31 177 58 24 32 0 0 chr13 64464765 64464796 -37408373 + AT_rich Low_complexity Low_complexity 1 31 0 238 206 68 41 chr13 64466929 64467002 -37406167 - MIR3 SINE MIR -13 195 121 305 94 189 0 chr13 64467784 64467837 -37405332 - MLT1B LTR MaLR -2 388 326 929 115 42 31 chr13 64467847 64468038 -37405131 - L1MA7 LINE L1 -1 6290 6098 2596 55 6 0 chr13 64468059 64468385 -37404784 - L1PA7 LINE L1 -13 6141 5814 3772 68 70 19 chr13 64468385 64468922 -37404247 - L1PA6 LINE L1 0 6154 5586 1374 169 16 4 chr13 64468922 64469164 -37404005 - L1MA7 LINE L1 -200 6091 5847 1295 191 34 87 chr13 64469165 64469522 -37403647 - MLT1B LTR MaLR -52 338 1 231 217 0 0 chr13 64469605 64469665 -37403504 + (TG)n Simple_repeat Simple_repeat 1 60 0 1854 163 67 3 chr13 64469844 64470187 -37402982 - MLT1A1 LTR MaLR 0 365 1 378 0 0 0 chr13 64470219 64470261 -37402908 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1961 127 0 0 chr13 64470266 64470541 -37402628 - AluSx SINE Alu -37 275 1 25 0 0 0 chr13 64470719 64470744 -37402425 + AT_rich Low_complexity Low_complexity 1 25 0 1489 202 29 47 chr13 64472959 64473340 -37399829 - MLT1B LTR MaLR -16 374 1 252 378 115 14 chr13 64474093 64474241 -37398928 - L2 LINE L2 -7 3265 3103 216 349 38 38 chr13 64474407 64474513 -37398656 + L2 LINE L2 3118 3223 -49 23 0 0 0 chr13 64475053 64475076 -37398093 + AT_rich Low_complexity Low_complexity 1 23 0 1750 180 7 0 chr13 64475282 64475565 -37397604 - AluJb SINE Alu -27 285 1 280 376 37 9 chr13 64476764 64476873 -37396296 + L2 LINE L2 3160 3271 -1 21 0 0 0 chr13 64477378 64477399 -37395770 + AT_rich Low_complexity Low_complexity 1 21 0 191 392 14 0 chr13 64477586 64477660 -37395509 + MIR SINE MIR 35 109 -99 685 144 9 162 chr13 64478050 64478272 -37394897 + MER5A DNA MER1_type 2 189 0 216 0 0 0 chr13 64479183 64479207 -37393962 + (T)n Simple_repeat Simple_repeat 1 24 0 2795 16 0 0 chr13 64479830 64480139 -37393030 + AluYa8 SINE Alu 1 309 -1 24 32 0 0 chr13 64481636 64481667 -37391502 + AT_rich Low_complexity Low_complexity 1 31 0 3572 237 209 28 chr13 64482258 64484872 -37388297 + L1M3e LINE L1 2 2779 -4327 40404 55 2 1 chr13 64484897 64491035 -37382134 - L1PA4 LINE L1 -5 6150 2 1096 237 63 26 chr13 64491037 64491691 -37381478 + L1M3e LINE L1 2770 3445 -3661 200 316 0 0 chr13 64492345 64492400 -37380769 - MIR3 SINE MIR -1 207 153 341 349 33 7 chr13 64492400 64492552 -37380617 + MER5B DNA MER1_type 1 156 -22 230 320 148 8 chr13 64492562 64492684 -37380485 - MIR3 SINE MIR -48 160 22 360 250 42 28 chr13 64492692 64492836 -37380333 + MER117 DNA MER1_type 2 147 -50 923 242 77 13 chr13 64493255 64493553 -37379616 - MER5C DNA MER1_type -6 318 2 814 254 29 0 chr13 64494021 64494230 -37378939 - MER58C DNA MER1_type 0 215 1 1235 249 105 42 chr13 64494283 64494786 -37378383 - MLT1F LTR MaLR -2 540 6 586 274 51 0 chr13 64495136 64495293 -37377876 - MIR SINE MIR -70 192 28 8217 127 16 11 chr13 64495862 64497196 -37375973 + L1P LINE L1 1 1341 -4805 225 0 0 0 chr13 64497215 64497240 -37375929 + (T)n Simple_repeat Simple_repeat 1 25 0 276 116 0 0 chr13 64498118 64498161 -37375008 - MADE1 DNA Mariner -37 43 1 189 0 0 0 chr13 64501574 64501595 -37371574 + (A)n Simple_repeat Simple_repeat 1 21 0 460 354 31 10 chr13 64502084 64502276 -37370893 - L3 LINE CR1 -13 1564 1369 266 253 280 13 chr13 64502696 64502846 -37370323 - L2 LINE L2 0 3313 3124 520 354 94 20 chr13 64503191 64503649 -37369520 - L2 LINE L2 -700 2614 2123 1786 159 73 98 chr13 64504047 64504284 -37368885 + MLT1C LTR MaLR 1 242 -225 2458 87 3 0 chr13 64504284 64504593 -37368576 + AluSg SINE Alu 1 310 0 1786 159 73 98 chr13 64504593 64504645 -37368524 + MLT1C LTR MaLR 242 294 -173 224 0 0 61 chr13 64504645 64504678 -37368491 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1786 159 73 98 chr13 64504678 64504866 -37368303 + MLT1C LTR MaLR 294 467 0 1312 247 45 24 chr13 64505289 64505665 -37367504 - MLT1E LTR MaLR 0 593 210 4539 193 93 119 chr13 64505730 64507532 -37365637 - MER52A LTR ERV1 0 1755 1 453 273 28 14 chr13 64507532 64507674 -37365495 - MLT1E LTR MaLR -449 144 1 1955 181 86 34 chr13 64507961 64508437 -37364732 - MLT1D LTR MaLR 0 505 5 1031 39 0 0 chr13 64508670 64508799 -37364370 + L1PA4 LINE L1 6027 6155 0 21 36 0 0 chr13 64509007 64509035 -37364134 + AT_rich Low_complexity Low_complexity 1 28 0 210 139 0 47 chr13 64509042 64509085 -37364084 + (TAAAAA)n Simple_repeat Simple_repeat 6 46 0 213 94 0 0 chr13 64510405 64510437 -37362732 + (TG)n Simple_repeat Simple_repeat 2 33 0 1018 231 74 83 chr13 64510811 64511339 -37361830 + LTR33A LTR ERVL 1 523 0 2174 124 0 13 chr13 64512525 64512840 -37360329 - AluSx SINE Alu -1 311 1 185 338 108 61 chr13 64513169 64513577 -37359592 - L2 LINE L2 -338 2976 2550 662 360 136 8 chr13 64513791 64514261 -37358908 - L3 LINE CR1 -5 1572 1043 21 36 0 0 chr13 64514525 64514553 -37358616 + AT_rich Low_complexity Low_complexity 1 28 0 642 194 31 0 chr13 64515853 64515982 -37357187 - MER20 DNA MER1_type 0 219 87 548 262 49 6 chr13 64515987 64516151 -37357018 + MIR SINE MIR 88 258 -4 2435 99 0 0 chr13 64516659 64516972 -37356197 + AluSq SINE Alu 1 313 0 1198 219 151 6 chr13 64517400 64517719 -37355450 + MLT1A1 LTR MaLR 1 365 0 494 300 62 48 chr13 64520080 64520307 -37352862 + MIR SINE MIR 8 237 -25 2465 168 37 51 chr13 64520587 64520854 -37352315 + L1MB7 LINE L1 5472 5741 -443 1669 163 34 34 chr13 64520854 64521148 -37352021 + AluJb SINE Alu 1 294 -18 2465 168 37 51 chr13 64521148 64521504 -37351665 + L1MB7 LINE L1 5741 6086 -98 817 196 149 17 chr13 64521503 64521705 -37351464 + L1M2 LINE L1 5547 5780 -469 * 337 217 11 0 chr13 64521705 64521797 -37351372 + L1MB7 LINE L1 6092 6184 0 817 196 149 17 chr13 64521797 64521860 -37351309 + L1M2 LINE L1 5780 5833 -416 21 82 0 0 chr13 64521880 64521929 -37351240 + AT_rich Low_complexity Low_complexity 1 49 0 276 250 111 19 chr13 64522048 64522156 -37351013 - MIR SINE MIR -85 177 60 * 310 338 174 35 chr13 64522152 64522492 -37350677 + L2 LINE L2 2882 3268 -4 42 36 0 0 chr13 64522801 64522857 -37350312 + AT_rich Low_complexity Low_complexity 1 56 0 3776 207 44 10 chr13 64523505 64524263 -37348906 - L1MB7 LINE L1 -13 6171 5338 2229 110 7 0 chr13 64524263 64524563 -37348606 - AluSc SINE Alu -7 302 1 3776 207 44 10 chr13 64524563 64525203 -37347966 - L1MB7 LINE L1 -846 5338 4721 1617 174 97 26 chr13 64525353 64525633 -37347536 + THE1C LTR MaLR 1 312 -63 2638 110 0 0 chr13 64525633 64525997 -37347172 - THE1B LTR MaLR 0 364 1 1617 174 97 26 chr13 64525997 64526066 -37347103 + THE1C LTR MaLR 312 375 0 22 0 0 0 chr13 64526455 64526477 -37346692 + AT_rich Low_complexity Low_complexity 1 22 0 632 303 16 16 chr13 64527943 64528131 -37345038 + MER5A DNA MER1_type 1 188 -1 239 267 0 0 chr13 64528272 64528347 -37344822 + L1M4 LINE L1 2582 2656 -3490 3673 231 31 6 chr13 64528456 64529536 -37343633 + L1M4 LINE L1 2636 3743 -2403 2382 267 80 19 chr13 64529556 64530669 -37342500 + L1MEc LINE L1 1204 2384 -4012 5721 118 21 2 chr13 64531096 64532674 -37340495 + L1PA15 LINE L1 4541 6156 -9 237 220 0 0 chr13 64534139 64534189 -37338980 + (TG)n Simple_repeat Simple_repeat 2 51 0 2300 116 0 0 chr13 64534909 64535220 -37337949 + AluSx SINE Alu 1 311 -1 1364 202 102 3 chr13 64535381 64535923 -37337246 + MLT1E1 LTR MaLR 1 654 0 239 353 59 0 chr13 64535978 64536080 -37337089 + L2 LINE L2 3163 3270 -2 2380 84 0 0 chr13 64538104 64538441 -37334728 + AluY SINE Alu 3 339 0 729 231 123 30 chr13 64541242 64541510 -37331659 + MLT1A2 LTR MaLR 4 296 -78 374 189 0 14 chr13 64541611 64541685 -37331484 + MLT1A2 LTR MaLR 302 374 0 272 332 47 25 chr13 64541685 64541920 -37331249 + L2 LINE L2 1343 1582 -1732 548 322 104 44 chr13 64541923 64542461 -37330708 + L2 LINE L2 2714 3280 -33 502 369 30 18 chr13 64542495 64542934 -37330235 + L2 LINE L2 1615 2058 -1256 1921 141 47 0 chr13 64543148 64543446 -37329723 + AluJb SINE Alu 1 312 0 681 291 62 16 chr13 64543635 64543879 -37329290 + MIR SINE MIR 5 259 -3 2280 141 110 11 chr13 64544156 64544610 -37328559 - L1MA9 LINE L1 0 6312 5814 203 229 0 0 chr13 64544613 64544648 -37328521 + (CA)n Simple_repeat Simple_repeat 2 36 0 275 203 14 0 chr13 64544681 64544750 -37328419 + (TA)n Simple_repeat Simple_repeat 2 71 0 6693 162 51 80 chr13 64544880 64545277 -37327892 - L1MA9 LINE L1 -509 5782 5375 5809 130 71 64 chr13 64545277 64546497 -37326672 + Tigger3b DNA MER2_type 3 1231 0 6693 162 51 80 chr13 64546497 64546533 -37326636 - L1MA9 LINE L1 -916 5375 5339 1191 204 30 114 chr13 64546533 64546929 -37326240 - MLT1A1 LTR MaLR 0 365 3 6693 162 51 80 chr13 64546929 64548725 -37324444 - L1MA9 LINE L1 -952 5339 3600 384 354 5 26 chr13 64548733 64548925 -37324244 + L2 LINE L2 2579 2766 -548 298 289 163 7 chr13 64549052 64549187 -37323982 + L2 LINE L2 2941 3096 -176 23 0 0 0 chr13 64549392 64549415 -37323754 + AT_rich Low_complexity Low_complexity 1 23 0 2470 122 6 0 chr13 64549607 64549969 -37323200 + THE1B LTR MaLR 1 364 0 2263 144 14 0 chr13 64550098 64550460 -37322709 - L1PA15 LINE L1 -8 6157 5791 392 286 38 0 chr13 64550683 64550816 -37322353 - MER112 DNA MER1_type -6 254 117 1005 224 36 18 chr13 64551011 64551230 -37321939 + AluJo SINE Alu 22 244 -68 2795 102 44 5 chr13 64552674 64553084 -37320085 - MER57B LTR ERV1 -8 426 1 574 205 139 6 chr13 64553296 64553462 -37319707 + MER53 DNA DNA 1 188 -1 7420 29 11 0 chr13 64553952 64555054 -37318115 - L1PA3 LINE L1 -2 6153 5044 6008 29 4 0 chr13 64555065 64555791 -37317378 + L1PA3 LINE L1 4286 5014 -1132 351 306 106 17 chr13 64555940 64556120 -37317049 - MIR SINE MIR -47 215 20 3673 161 13 16 chr13 64556857 64557851 -37315318 + L1MA7 LINE L1 4712 5703 -588 1115 208 48 63 chr13 64557852 64558184 -37314985 - LTR40c LTR ERVL -138 327 1 513 283 30 74 chr13 64558185 64558214 -37314955 - MIR SINE MIR -37 225 196 2464 67 0 0 chr13 64558214 64558511 -37314658 + AluY SINE Alu 3 299 -12 513 283 30 74 chr13 64558511 64558711 -37314458 - MIR SINE MIR -66 196 6 22 0 0 0 chr13 64558912 64558934 -37314235 + GC_rich Low_complexity Low_complexity 1 22 0 6845 32 1 0 chr13 64559099 64559912 -37313257 - L1PA4 LINE L1 0 6155 5342 1804 26 0 0 chr13 64559912 64560139 -37313030 + L1PA4 LINE L1 5107 5333 -813 433 145 84 12 chr13 64560218 64560301 -37312868 + L1MA7 LINE L1 6004 6092 -199 398 163 47 0 chr13 64560303 64560389 -37312780 + L1MA9 LINE L1 6215 6304 -8 242 344 30 38 chr13 64560601 64560732 -37312437 + L2 LINE L2 3123 3252 -20 5328 138 18 0 chr13 64561287 64562121 -37311048 + Tigger1 DNA MER2_type 1566 2414 -4 184 329 50 71 chr13 64569028 64569168 -37304001 + L2 LINE L2 2924 3060 -212 233 365 0 31 chr13 64570091 64570187 -37302982 - L2 LINE L2 -221 3051 2959 459 293 45 23 chr13 64570629 64570762 -37302407 - MER91A DNA MER1_type -8 188 53 27 62 0 0 chr13 64571324 64571372 -37301797 + AT_rich Low_complexity Low_complexity 1 48 0 1362 208 101 46 chr13 64573377 64573815 -37299354 + MLT1C LTR MaLR 6 467 0 627 302 146 31 chr13 64573835 64573934 -37299235 + L2 LINE L2 2220 2306 -1008 1779 160 70 97 chr13 64573934 64574409 -37298760 - MLT2C2 LTR ERVL -2 462 1 627 302 146 31 chr13 64574409 64574700 -37298469 + L2 LINE L2 2306 2655 -659 1002 218 26 127 chr13 64574737 64574960 -37298209 - MLT1A2 LTR MaLR 0 467 223 2181 119 13 0 chr13 64574960 64575263 -37297906 - AluSq SINE Alu -6 307 1 1002 218 26 127 chr13 64575263 64575349 -37297820 - MLT1A2 LTR MaLR -244 223 130 1774 124 82 11 chr13 64575349 64575631 -37297538 - AluSg SINE Alu -8 302 1 1002 218 26 127 chr13 64575631 64575737 -37297432 - MLT1A2 LTR MaLR -337 130 1 1385 223 25 0 chr13 64576077 64576359 -37296810 + AluJo SINE Alu 10 298 -14 414 317 93 24 chr13 64576756 64577604 -37295565 + L1MEd LINE L1 780 1734 -4576 246 281 97 9 chr13 64577678 64577792 -37295377 + L2 LINE L2 2973 3096 -217 329 263 0 0 chr13 64578481 64578557 -37294612 - MIR SINE MIR -75 133 58 1062 208 19 19 chr13 64578852 64579068 -37294101 + MER20 DNA MER1_type 3 218 -1 468 271 33 79 chr13 64579264 64579478 -37293691 + L1ME3A LINE L1 5962 6165 -5 219 36 0 0 chr13 64579717 64579745 -37293424 + (CA)n Simple_repeat Simple_repeat 1 28 0 18525 81 4 3 chr13 64579929 64583318 -37289851 - L1PA7 LINE L1 -20 6449 3061 1811 148 0 45 chr13 64583319 64583630 -37289539 - L1PA7 LINE L1 -6158 303 7 1094 270 233 49 chr13 64583672 64584473 -37288696 - HAL1 LINE L1 -108 2399 1747 2136 126 0 0 chr13 64584473 64584766 -37288403 - AluSx SINE Alu -19 293 1 1094 270 233 49 chr13 64584766 64585436 -37287733 - HAL1 LINE L1 -760 1747 657 14308 141 24 6 chr13 64585886 64588262 -37284907 - Tigger1 DNA MER2_type 0 2418 1 265 309 46 40 chr13 64588345 64588497 -37284672 - HAL1 LINE L1 -2341 166 14 374 311 0 0 chr13 64588692 64588798 -37284371 - L2 LINE L2 -1374 1940 1835 303 150 0 0 chr13 64590445 64590505 -37282664 + (GA)n Simple_repeat Simple_repeat 1 60 0 204 111 0 0 chr13 64590662 64590698 -37282471 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 395 271 143 0 chr13 64590836 64590969 -37282200 + MIR SINE MIR 105 256 -6 525 318 7 0 chr13 64591151 64591305 -37281864 + MIR SINE MIR 108 262 0 25 0 0 0 chr13 64591380 64591405 -37281764 + AT_rich Low_complexity Low_complexity 1 25 0 324 350 49 6 chr13 64591527 64591690 -37281479 - L2 LINE L2 0 3313 3144 204 364 71 20 chr13 64591775 64591874 -37281295 - L2 LINE L2 0 3313 3210 194 362 43 0 chr13 64592181 64592250 -37280919 + L2 LINE L2 3193 3264 -8 23 0 0 0 chr13 64592506 64592529 -37280640 + AT_rich Low_complexity Low_complexity 1 23 0 574 279 124 42 chr13 64594017 64594347 -37278822 - Charlie8 DNA MER1_type -1941 476 120 200 210 42 7 chr13 64594373 64594516 -37278653 + (TA)n Simple_repeat Simple_repeat 2 149 0 210 292 73 44 chr13 64594758 64594895 -37278274 + L2 LINE L2 2864 3004 -268 805 208 83 0 chr13 64595010 64595178 -37277991 - MER5A DNA MER1_type -7 182 1 2359 135 57 26 chr13 64595284 64595801 -37277368 - MLT2A2 LTR ERVL -1 553 1 775 317 152 10 chr13 64596614 64597273 -37275896 - L2 LINE L2 -8 3305 2556 189 400 0 0 chr13 64598059 64598174 -37274995 - L2 LINE L2 -2493 821 707 556 318 63 12 chr13 64598201 64598456 -37274713 + L2 LINE L2 1239 1506 -1808 189 348 121 19 chr13 64598469 64598676 -37274493 + L2 LINE L2 1726 1953 -1361 326 273 55 18 chr13 64598730 64598840 -37274329 + L1ME LINE L1 20 133 -5937 395 298 84 28 chr13 64599327 64599505 -37273664 + L1ME LINE L1 272 459 -5611 592 288 38 75 chr13 64599551 64600003 -37273166 + L1ME LINE L1 407 841 -5229 182 338 133 82 chr13 64600225 64601072 -37272097 + L2 LINE L2 1789 2679 -635 523 298 102 37 chr13 64601362 64601607 -37271562 - MIR SINE MIR -1 261 1 2436 74 0 16 chr13 64601679 64601990 -37271179 + AluY SINE Alu 3 308 -3 307 338 50 91 chr13 64602029 64602248 -37270921 + L2 LINE L2 3054 3263 -9 505 291 74 16 chr13 64602854 64603043 -37270126 + MLT1I LTR MaLR 19 218 -191 475 222 20 0 chr13 64603074 64603173 -37269996 + MLT1I LTR MaLR 309 409 0 330 132 0 0 chr13 64603730 64603783 -37269386 + (TG)n Simple_repeat Simple_repeat 2 54 0 208 217 33 0 chr13 64603783 64603843 -37269326 + (TA)n Simple_repeat Simple_repeat 2 63 0 183 80 0 0 chr13 64604102 64604127 -37269042 + (T)n Simple_repeat Simple_repeat 1 25 0 186 224 20 20 chr13 64604446 64604495 -37268674 + L2 LINE L2 3182 3230 -83 445 231 23 163 chr13 64604578 64604885 -37268284 + Charlie8 DNA MER1_type 1 264 -2153 2097 126 0 22 chr13 64605952 64606269 -37266900 + AluSx SINE Alu 1 310 -2 432 332 98 19 chr13 64606397 64606773 -37266396 - L1M4 LINE L1 -749 5397 4992 1601 94 0 9 chr13 64607190 64607403 -37265766 + AluSg/x SINE Alu 82 292 -20 272 331 99 7 chr13 64607594 64607736 -37265433 - MIR SINE MIR 0 262 108 2048 124 7 3 chr13 64607883 64608173 -37264996 - AluSx SINE Alu -21 291 1 2136 118 3 0 chr13 64612182 64612470 -37260699 + AluSx SINE Alu 3 291 -21 2741 221 176 11 chr13 64612487 64613428 -37259741 + L1MC4 LINE L1 6945 8041 -1 1333 138 78 143 chr13 64614937 64615308 -37257861 + MER7A DNA MER2_type 1 345 -1 260 267 11 56 chr13 64615526 64615616 -37257553 + MIR SINE MIR 80 165 -97 349 284 29 0 chr13 64616562 64616664 -37256505 + MIR SINE MIR 73 177 -85 209 136 0 23 chr13 64617195 64617239 -37255930 + (TTATA)n Simple_repeat Simple_repeat 4 46 0 23 0 0 0 chr13 64619070 64619093 -37254076 + AT_rich Low_complexity Low_complexity 1 23 0 514 214 23 30 chr13 64621075 64621206 -37251963 - MER94 DNA DNA 0 134 5 680 182 108 7 chr13 64621398 64621546 -37251623 + MIR SINE MIR 6 168 -94 490 148 13 1 chr13 64621547 64621633 -37251536 - THE1C LTR MaLR 0 375 279 5519 102 4 0 chr13 64621633 64622384 -37250785 - THE1B-int LTR MaLR -826 754 1 1987 126 75 29 chr13 64622384 64622732 -37250437 - THE1B LTR MaLR 0 364 1 372 186 0 14 chr13 64622737 64622807 -37250362 + MIR SINE MIR 162 230 -32 1554 251 46 87 chr13 64624939 64625801 -37247368 + HAL1 LINE L1 916 1742 -765 389 280 20 0 chr13 64625826 64625926 -37247243 - MER94 DNA DNA 0 134 33 333 316 8 34 chr13 64626561 64626678 -37246491 + MIR SINE MIR 25 138 -124 221 171 0 0 chr13 64627330 64627371 -37245798 + T-rich Low_complexity Low_complexity 1 41 0 2198 109 0 7 chr13 64629494 64629796 -37243373 + AluSq SINE Alu 11 310 -3 184 326 53 21 chr13 64630246 64630341 -37242828 + MIR SINE MIR 34 131 -77 23 0 0 0 chr13 64630419 64630442 -37242727 + AT_rich Low_complexity Low_complexity 1 23 0 37 0 0 0 chr13 64631900 64631937 -37241232 + AT_rich Low_complexity Low_complexity 1 37 0 353 209 23 0 chr13 64632659 64632745 -37240424 - MER103 DNA DNA -7 159 72 24 53 0 0 chr13 64632752 64632790 -37240379 + AT_rich Low_complexity Low_complexity 1 38 0 764 126 45 0 chr13 64634382 64634493 -37238676 + AluJb SINE Alu 5 120 -192 24 0 0 0 chr13 64635425 64635449 -37237720 + AT_rich Low_complexity Low_complexity 1 24 0 371 311 34 0 chr13 64635815 64635934 -37237235 + MIR SINE MIR 137 259 -3 183 100 0 0 chr13 64636211 64636241 -37236928 + (A)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr13 64636548 64636580 -37236589 + AT_rich Low_complexity Low_complexity 1 32 0 2207 149 5 29 chr13 64637383 64637765 -37235404 - THE1C LTR MaLR 0 375 3 332 264 85 0 chr13 64639097 64639203 -37233966 + L1ME2 LINE L1 6039 6153 -11 197 33 33 0 chr13 64639768 64639798 -37233371 + (TTTTTG)n Simple_repeat Simple_repeat 5 35 0 15959 210 37 18 chr13 64639799 64641668 -37231501 - L1PA16 LINE L1 -8 6861 5029 3052 36 0 0 chr13 64641668 64642033 -37231136 - L1PA4 LINE L1 -2 6153 5789 15959 210 37 18 chr13 64642033 64643555 -37229614 - L1PA16 LINE L1 -1840 5029 3538 3064 73 54 5 chr13 64643555 64643978 -37229191 + MLT2A1 LTR ERVL 1 444 0 15959 210 37 18 chr13 64643978 64645508 -37227661 - L1PA16 LINE L1 -3331 3538 2039 7493 37 0 0 chr13 64645508 64647085 -37226084 - L1PA4 LINE L1 -2 6153 4576 15959 210 37 18 chr13 64647085 64648842 -37224327 - L1PA16 LINE L1 -4830 2039 15 3975 104 6 49 chr13 64649426 64650081 -37223088 + L1PA13 LINE L1 5533 6159 -4 592 211 79 0 chr13 64650092 64650206 -37222963 + FLAM_C SINE Alu 1 123 -20 26 30 0 0 chr13 64650208 64650241 -37222928 + AT_rich Low_complexity Low_complexity 1 33 0 1390 232 40 16 chr13 64652353 64652728 -37220441 + L1ME3A LINE L1 5781 6164 -6 192 135 0 0 chr13 64653030 64653067 -37220102 + (TG)n Simple_repeat Simple_repeat 2 38 0 332 189 200 11 chr13 64653381 64653476 -37219693 + MER5C DNA MER1_type 12 124 -200 266 228 0 98 chr13 64653504 64653596 -37219573 + MER5C DNA MER1_type 233 315 -9 3021 123 84 24 chr13 64654935 64655432 -37217737 - MER1A DNA MER1_type 0 527 1 542 232 141 17 chr13 64655682 64655859 -37217310 + MIR SINE MIR 51 249 -13 25 0 0 0 chr13 64656158 64656183 -37216986 + AT_rich Low_complexity Low_complexity 1 25 0 726 269 70 12 chr13 64657820 64658062 -37215107 - MIR SINE MIR -4 258 3 304 296 96 38 chr13 64658825 64659139 -37214030 + L1ME4a LINE L1 5484 5815 -306 281 266 37 0 chr13 64659554 64659663 -37213506 + L1ME4a LINE L1 6007 6119 -2 372 335 24 29 chr13 64660472 64660642 -37212527 - MIR SINE MIR -15 247 79 1268 224 46 46 chr13 64660644 64661014 -37212155 + MLT1A2 LTR MaLR 1 370 -4 2516 58 0 6 chr13 64661496 64661807 -37211362 - AluY SINE Alu -2 309 1 185 268 24 49 chr13 64662200 64662282 -37210887 + MIR3 SINE MIR 124 203 -5 207 0 0 0 chr13 64662318 64662341 -37210828 + (TC)n Simple_repeat Simple_repeat 1 23 0 221 184 23 23 chr13 64665230 64665279 -37207890 + GA-rich Low_complexity Low_complexity 4 55 -35 2118 122 7 3 chr13 64665279 64665583 -37207586 + AluSx SINE Alu 1 305 -7 221 184 23 23 chr13 64665583 64665620 -37207549 + GA-rich Low_complexity Low_complexity 54 90 0 2936 173 39 10 chr13 64665692 64666345 -37206824 - MER67C LTR ERV1 -1 709 1 271 241 13 0 chr13 64666602 64666681 -37206488 - MER5A DNA MER1_type -101 88 9 2462 66 3 0 chr13 64666817 64667134 -37206035 + L1PA6 LINE L1 5837 6154 0 181 333 29 14 chr13 64667298 64667367 -37205802 - L3 LINE CR1 -215 1362 1293 1789 213 5 11 chr13 64667970 64668337 -37204832 - MLT1A1 LTR MaLR 0 365 1 320 216 81 36 chr13 64669209 64669320 -37203849 + MLT1L LTR MaLR 4 119 -496 199 179 131 83 chr13 64669756 64669840 -37203329 + MIR SINE MIR 79 166 -96 21 82 0 0 chr13 64670606 64670655 -37202514 + AT_rich Low_complexity Low_complexity 1 49 0 427 152 0 91 chr13 64672044 64672106 -37201063 - L1MB1 LINE L1 -28 6161 6110 3135 113 90 8 chr13 64672106 64672593 -37200576 - MER1A DNA MER1_type 0 527 1 427 152 0 91 chr13 64672593 64672629 -37200540 - L1MB1 LINE L1 -79 6110 6072 829 170 10 62 chr13 64672629 64672822 -37200347 + L1MA10 LINE L1 6141 6324 -10 337 316 53 13 chr13 64672968 64673120 -37200049 - MIR3 SINE MIR -9 199 42 325 167 19 0 chr13 64673134 64673188 -37199981 - MER92B LTR ERV1 -578 58 4 476 221 53 9 chr13 64675324 64675437 -37197732 - MER5B DNA MER1_type -60 118 1 214 200 0 0 chr13 64675744 64675784 -37197385 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 482 246 18 18 chr13 64675869 64675983 -37197186 - MLT1H LTR MaLR 0 549 436 216 200 0 0 chr13 64676121 64676166 -37197003 + A-rich Low_complexity Low_complexity 1 45 0 2012 92 20 44 chr13 64676614 64676907 -37196262 - AluSx SINE Alu -23 289 4 22 56 0 0 chr13 64677256 64677292 -37195877 + AT_rich Low_complexity Low_complexity 1 36 0 287 346 65 9 chr13 64677418 64677525 -37195644 - L2 LINE L2 -44 3228 3116 27 73 0 0 chr13 64677926 64677981 -37195188 + AT_rich Low_complexity Low_complexity 1 55 0 228 386 124 4 chr13 64679128 64679361 -37193808 - L2 LINE L2 -337 2977 2717 2407 177 75 4 chr13 64679859 64680339 -37192830 - MER67D LTR ERV1 0 514 1 594 325 31 28 chr13 64680913 64681168 -37192001 - MIR SINE MIR -1 261 6 186 333 56 56 chr13 64681406 64681514 -37191655 - L2 LINE L2 -12 3260 3153 378 226 0 0 chr13 64681538 64681622 -37191547 + MER113 DNA MER1_type? 28 111 -410 518 207 0 93 chr13 64682061 64682211 -37190958 - MIR SINE MIR -65 197 62 236 304 0 0 chr13 64682424 64682493 -37190676 + CT-rich Low_complexity Low_complexity 1 69 0 229 277 25 88 chr13 64682508 64682667 -37190502 + L2 LINE L2 2733 2881 -433 226 347 148 78 chr13 64682991 64683262 -37189907 + L2 LINE L2 2977 3266 -6 311 272 88 88 chr13 64685594 64685639 -37187530 - L1MC/D LINE L1 -623 5547 5504 14021 138 23 19 chr13 64685639 64686269 -37186900 + Tigger1 DNA MER2_type 2 628 -1790 2214 107 0 3 chr13 64686269 64686567 -37186602 + AluSx SINE Alu 1 297 -15 14021 138 23 19 chr13 64686567 64688129 -37185040 + Tigger1 DNA MER2_type 628 2182 -236 228 86 0 0 chr13 64688129 64688164 -37185005 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 2027 130 0 4 chr13 64688166 64688443 -37184726 - AluSx SINE Alu -36 276 1 14021 138 23 19 chr13 64688443 64688653 -37184516 + Tigger1 DNA MER2_type 2182 2418 0 311 272 88 88 chr13 64688653 64689146 -37184023 - L1MC/D LINE L1 -666 5504 5256 3493 117 23 80 chr13 64689474 64690125 -37183044 + L1PB3 LINE L1 5523 6136 -18 366 80 0 0 chr13 64690353 64690403 -37182766 + (CA)n Simple_repeat Simple_repeat 2 51 0 624 228 93 29 chr13 64691099 64691411 -37181758 + L1ME4a LINE L1 5787 6118 -3 2087 120 7 3 chr13 64691819 64692118 -37181051 - AluSc SINE Alu -9 300 1 21 0 0 0 chr13 64692272 64692293 -37180876 + AT_rich Low_complexity Low_complexity 1 21 0 310 304 13 0 chr13 64692659 64692738 -37180431 - MIR SINE MIR -178 84 5 1408 236 22 50 chr13 64692985 64693429 -37179740 - L1ME3A LINE L1 0 6170 5739 303 293 155 9 chr13 64694396 64694512 -37178657 + MIR3 SINE MIR 36 168 -40 181 231 0 0 chr13 64695123 64695162 -37178007 + L2 LINE L2 3265 3303 -10 366 257 0 0 chr13 64696711 64696886 -37176283 + GA-rich Low_complexity Low_complexity 2 176 0 497 250 8 0 chr13 64698037 64698161 -37175008 + L1ME3A LINE L1 6046 6170 0 256 290 14 0 chr13 64698391 64698460 -37174709 + MIR SINE MIR 12 81 -181 1420 264 72 61 chr13 64698460 64699055 -37174114 - MLT1H1 LTR MaLR 0 555 1 558 277 32 0 chr13 64699055 64699210 -37173959 + MIR SINE MIR 77 236 -26 260 308 58 33 chr13 64700262 64700382 -37172787 - L2 LINE L2 -13 3259 3137 268 268 237 0 chr13 64700638 64700735 -37172434 + L2 LINE L2 3149 3268 -4 2277 82 9 35 chr13 64701384 64701703 -37171466 + AluY SINE Alu 1 311 0 1823 158 7 14 chr13 64702058 64702349 -37170820 + AluJb SINE Alu 1 289 -23 777 219 34 11 chr13 64702562 64702831 -37170338 + L1MA7 LINE L1 3358 3632 -3933 12577 195 30 20 chr13 64702932 64705137 -37168032 + L1MA7 LINE L1 3621 5857 -1853 189 0 0 0 chr13 64705137 64705158 -37168011 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 12577 195 30 20 chr13 64705158 64707032 -37166137 + L1MA7 LINE L1 5857 7710 0 2986 209 21 10 chr13 64707075 64707793 -37165376 + L1MA9 LINE L1 4608 5333 -813 8153 209 24 7 chr13 64707798 64712158 -37161011 + L1PBa LINE L1 6 4747 -2115 2036 25 0 4 chr13 64712164 64712438 -37160731 + L1PA3 LINE L1 5904 6176 0 933 241 48 53 chr13 64712439 64712838 -37160331 + L1MA9 LINE L1 5878 6274 -38 25 49 0 33 chr13 64712839 64712877 -37160292 + AT_rich Low_complexity Low_complexity 1 38 -21 1059 90 0 0 chr13 64712877 64713021 -37160148 + L1MA2 LINE L1 6160 6303 -1 25 49 0 33 chr13 64713021 64713043 -37160126 + AT_rich Low_complexity Low_complexity 38 59 0 245 253 13 40 chr13 64713164 64713239 -37159930 - MER5B DNA MER1_type -21 168 86 22 70 0 0 chr13 64713610 64713653 -37159516 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr13 64716059 64716087 -37157082 + AT_rich Low_complexity Low_complexity 1 28 0 211 315 161 0 chr13 64717044 64717193 -37155976 - MIR3 SINE MIR -3 205 33 200 239 22 0 chr13 64717466 64717512 -37155657 + A-rich Low_complexity Low_complexity 2 48 0 6374 30 9 0 chr13 64719916 64720692 -37152477 - L1PA4 LINE L1 -2103 4043 3261 11172 27 6 1 chr13 64720692 64722784 -37150385 + L1PA4 LINE L1 4060 6155 0 305 109 0 0 chr13 64723044 64723090 -37150079 + MADE1 DNA Mariner 35 80 0 375 274 126 22 chr13 64723188 64723323 -37149846 - MIR SINE MIR -108 154 6 256 299 33 81 chr13 64723507 64723718 -37149451 + L2 LINE L2 2652 2852 -462 2228 107 0 23 chr13 64725219 64725528 -37147641 - AluSx SINE Alu -8 304 3 25 51 0 0 chr13 64726324 64726363 -37146806 + AT_rich Low_complexity Low_complexity 1 39 0 30 0 0 24 chr13 64726453 64726472 -37146697 + AT_rich Low_complexity Low_complexity 1 19 -21 2210 112 3 3 chr13 64726472 64726784 -37146385 + AluSq SINE Alu 1 312 -1 30 0 0 24 chr13 64726784 64726805 -37146364 + AT_rich Low_complexity Low_complexity 19 40 0 544 196 51 22 chr13 64727107 64727245 -37145924 - MLT1L LTR MaLR -8 607 466 256 191 0 0 chr13 64727385 64727432 -37145737 - MLT1L LTR MaLR -540 75 29 1296 217 21 10 chr13 64727599 64727982 -37145187 - L1 LINE L1 -2728 3418 3032 248 345 0 84 chr13 64728090 64728232 -37144937 - MIR3 SINE MIR -69 139 10 312 188 0 0 chr13 64728324 64728388 -37144781 + (CAGA)n Simple_repeat Simple_repeat 1 64 0 216 323 152 28 chr13 64728929 64729146 -37144023 + MIR SINE MIR 5 248 -14 226 329 13 0 chr13 64729368 64729447 -37143722 + MLT1I LTR MaLR 63 142 -267 2436 60 3 0 chr13 64729731 64730033 -37143136 - AluY SINE Alu -8 303 1 21 36 0 0 chr13 64730639 64730667 -37142502 + AT_rich Low_complexity Low_complexity 1 28 0 302 333 111 21 chr13 64730953 64731097 -37142072 + L1MEd LINE L1 497 653 -5719 198 0 0 0 chr13 64731149 64731171 -37141998 + (T)n Simple_repeat Simple_repeat 1 22 0 2217 97 3 3 chr13 64731176 64731465 -37141704 + AluSc SINE Alu 1 289 -20 1372 114 58 10 chr13 64731470 64731829 -37141340 - L1P4 LINE L1 -647 5521 5147 391 325 45 56 chr13 64732677 64732963 -37140206 + L1MEd LINE L1 1702 1984 -4579 345 255 19 83 chr13 64733248 64733405 -37139764 + L1MEd LINE L1 2260 2406 -3978 382 222 0 0 chr13 64733417 64733489 -37139680 + Tigger5 DNA MER2_type 8 79 -2244 289 175 0 18 chr13 64733495 64733552 -37139617 + Tigger5 DNA MER2_type 2268 2323 0 247 303 72 37 chr13 64733704 64734124 -37139045 + L1MEd LINE L1 2567 3003 -3379 2577 218 45 12 chr13 64734128 64734888 -37138281 - L1M LINE L1 -743 5403 4636 4985 160 23 3 chr13 64734892 64735797 -37137372 + L1MC1 LINE L1 5403 6325 -8 6164 69 4 1 chr13 64735799 64736596 -37136573 + L1PA8 LINE L1 5360 6158 -14 311 328 49 77 chr13 64737116 64737363 -37135806 - L2 LINE L2 -1 3271 3032 2962 75 5 0 chr13 64738913 64739315 -37133854 + MLT2A1 LTR ERVL 1 404 -40 407 71 0 0 chr13 64739385 64739441 -37133728 + (GA)n Simple_repeat Simple_repeat 2 57 0 294 0 0 0 chr13 64739441 64739475 -37133694 + MLT2A1 LTR ERVL 411 444 0 562 0 41 0 chr13 64739800 64739873 -37133296 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 501 286 50 27 chr13 64740388 64740608 -37132561 + MIR SINE MIR 25 249 -13 25 51 0 0 chr13 64741322 64741361 -37131808 + AT_rich Low_complexity Low_complexity 1 39 0 2167 143 20 40 chr13 64741868 64742266 -37130903 - MLT1B LTR MaLR 0 390 1 7171 49 11 1 chr13 64742692 64743718 -37129451 + L1PA8 LINE L1 5128 6169 -3 1742 289 53 17 chr13 64743743 64745126 -37128043 - L1MEc LINE L1 -3684 2396 1004 522 209 36 14 chr13 64745135 64745274 -37127895 - L1MA4A LINE L1 -21 6282 6141 267 152 0 0 chr13 64745274 64745320 -37127849 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 353 289 0 0 chr13 64745320 64745410 -37127759 - L1MC4 LINE L1 -1339 6703 6614 353 292 0 0 chr13 64745339 64745428 -37127741 + L1MC4 LINE L1 6615 6703 -1339 374 109 31 0 chr13 64745428 64745492 -37127677 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 2699 145 22 97 chr13 64745492 64746134 -37127035 - L1MA4 LINE L1 -176 6124 5531 1335 273 106 42 chr13 64746135 64747042 -37126127 - L1MEc LINE L1 -5086 984 20 724 212 26 145 chr13 64747286 64747555 -37125614 + AluSp SINE Alu 4 240 -73 3853 121 99 95 chr13 64747556 64748927 -37124242 - pTR5 LTR ERV1 0 2438 743 352 131 16 0 chr13 64748927 64748988 -37124181 + AluSc SINE Alu 233 294 -5 2354 79 0 16 chr13 64748989 64749305 -37123864 + AluY SINE Alu 1 311 0 276 237 17 0 chr13 64749624 64749683 -37123486 - L2 LINE L2 0 3313 3254 21 57 0 0 chr13 64751038 64751073 -37122096 + AT_rich Low_complexity Low_complexity 1 35 0 229 244 0 0 chr13 64751383 64751428 -37121741 + T-rich Low_complexity Low_complexity 1 45 0 236 313 15 0 chr13 64751428 64751495 -37121674 + L2 LINE L2 3184 3251 -21 226 317 6 116 chr13 64751970 64752134 -37121035 + MIR SINE MIR 59 204 -58 2226 100 0 50 chr13 64752232 64752553 -37120616 + AluSg SINE Alu 1 305 -5 208 325 0 12 chr13 64752852 64752932 -37120237 + CT-rich Low_complexity Low_complexity 2 80 0 241 243 243 0 chr13 64753327 64753434 -37119735 - L1MC5 LINE L1 -72 7889 7757 342 0 0 0 chr13 64753452 64753490 -37119679 + (TA)n Simple_repeat Simple_repeat 2 39 0 2270 123 0 0 chr13 64753490 64753791 -37119378 - AluSx SINE Alu -11 301 1 1053 182 32 0 chr13 64754366 64754553 -37118616 + AluJo SINE Alu 94 286 -26 200 57 0 29 chr13 64754554 64754589 -37118580 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 425 324 9 0 chr13 64755239 64755347 -37117822 + L2 LINE L2 3161 3269 -3 999 284 67 37 chr13 64755447 64756168 -37117001 - L1MDa LINE L1 -4358 1722 981 524 180 81 25 chr13 64756198 64756359 -37116810 - L1MA4 LINE L1 -21 6279 6113 231 114 0 0 chr13 64756359 64756394 -37116775 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 234 222 49 0 chr13 64756399 64756480 -37116689 - L1MC4 LINE L1 -1343 6699 6615 361 76 30 30 chr13 64756481 64756547 -37116622 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 2670 148 22 97 chr13 64756547 64757189 -37115980 - L1MA4 LINE L1 -176 6124 5531 1357 273 106 41 chr13 64757190 64758096 -37115073 - L1MDa LINE L1 -5086 984 20 749 210 26 151 chr13 64758340 64758611 -37114558 + AluSx SINE Alu 4 240 -72 4043 116 99 95 chr13 64758612 64759983 -37113186 - pTR5 LTR ERV1 0 2438 743 352 131 16 0 chr13 64759983 64760044 -37113125 + AluSc SINE Alu 233 294 -5 2363 79 0 16 chr13 64760045 64760361 -37112808 + AluY SINE Alu 1 311 0 282 237 17 0 chr13 64760680 64760739 -37112430 - L2 LINE L2 0 3313 3254 21 57 0 0 chr13 64762094 64762129 -37111040 + AT_rich Low_complexity Low_complexity 1 35 0 195 260 39 67 chr13 64762341 64762445 -37110724 + L2 LINE L2 3136 3236 -77 260 299 15 0 chr13 64762484 64762551 -37110618 + L2 LINE L2 3184 3251 -21 226 317 6 116 chr13 64763026 64763190 -37109979 + MIR SINE MIR 59 204 -58 2243 98 0 41 chr13 64763288 64763606 -37109563 + AluSg SINE Alu 1 305 -5 208 325 0 12 chr13 64763910 64763990 -37109179 + CT-rich Low_complexity Low_complexity 2 80 0 241 243 243 0 chr13 64764385 64764492 -37108677 - L1MC5 LINE L1 -72 7889 7757 2325 116 0 0 chr13 64764529 64764832 -37108337 - AluSx SINE Alu -9 303 1 1053 182 32 0 chr13 64765407 64765594 -37107575 + AluJo SINE Alu 94 286 -26 200 57 0 29 chr13 64765595 64765630 -37107539 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 451 306 9 0 chr13 64766279 64766387 -37106782 + L2 LINE L2 3161 3269 -3 715 306 68 21 chr13 64766969 64767486 -37105683 + L1ME3A LINE L1 5337 5877 -293 516 242 143 28 chr13 64768136 64768318 -37104851 + MIR SINE MIR 21 223 -39 1975 140 7 7 chr13 64769814 64770106 -37103063 - AluSx SINE Alu -20 292 1 237 310 89 47 chr13 64770118 64770426 -37102743 + L2 LINE L2 2698 3018 -254 230 341 0 0 chr13 64770728 64770810 -37102359 + MIR SINE MIR 67 148 -114 282 148 0 0 chr13 64771591 64771645 -37101524 + (TTCA)n Simple_repeat Simple_repeat 1 54 0 1484 208 60 20 chr13 64772075 64772426 -37100743 - MLT1A1 LTR MaLR 0 365 1 516 237 155 16 chr13 64772435 64772629 -37100540 - L2 LINE L2 -14 3299 3079 534 325 12 0 chr13 64772669 64772832 -37100337 + MIR SINE MIR 20 184 -78 460 309 128 60 chr13 64773057 64773393 -37099776 - L2 LINE L2 -813 2501 2143 354 344 71 16 chr13 64773596 64773779 -37099390 - MIR SINE MIR -60 202 10 299 283 227 10 chr13 64773788 64773986 -37099183 - L3 LINE CR1 -5 1572 1332 544 319 148 22 chr13 64774048 64774543 -37098626 + L1M4 LINE L1 3654 4210 -1936 317 263 51 32 chr13 64774570 64774787 -37098382 + L1M4 LINE L1 4271 4491 -1655 36 40 0 0 chr13 64774904 64774954 -37098215 + AT_rich Low_complexity Low_complexity 1 50 0 5793 54 3 4 chr13 64775591 64776327 -37096842 + L1PA7 LINE L1 5417 6151 -3 288 260 27 0 chr13 64776468 64776541 -37096628 + GA-rich Low_complexity Low_complexity 1 75 0 1767 148 0 59 chr13 64776767 64777072 -37096097 - AluJo SINE Alu -25 287 1 211 363 12 0 chr13 64777082 64777162 -37096007 + L2 LINE L2 3230 3310 -3 1821 210 8 0 chr13 64777235 64777597 -37095572 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr13 64778754 64778776 -37094393 + AT_rich Low_complexity Low_complexity 1 22 0 205 145 29 58 chr13 64781370 64781439 -37091730 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 1679 196 7 0 chr13 64782470 64782782 -37090387 - AluJb SINE Alu 0 314 1 5897 162 34 39 chr13 64782793 64784568 -37088601 - L1MC1 LINE L1 -1 6332 4572 774 299 82 49 chr13 64784569 64784713 -37088456 - MLT1H LTR MaLR -4 545 407 2844 10 0 0 chr13 64784713 64785021 -37088148 + AluY SINE Alu 1 308 -3 774 299 82 49 chr13 64785021 64785367 -37087802 - MLT1H LTR MaLR -142 407 39 252 286 151 8 chr13 64785673 64785799 -37087370 + L2 LINE L2 1920 2063 -1251 2061 245 48 97 chr13 64785801 64785839 -37087330 + L2 LINE L2 2282 2320 -993 1394 203 64 47 chr13 64785839 64786198 -37086971 - MLT1A1 LTR MaLR 0 365 1 2061 245 48 97 chr13 64786198 64787226 -37085943 + L2 LINE L2 2320 3298 -15 2179 122 10 0 chr13 64787255 64787550 -37085619 + AluSx SINE Alu 3 300 -12 297 152 91 71 chr13 64787708 64787807 -37085362 + LTR67 LTR ERVL 457 557 0 489 267 9 91 chr13 64788706 64788938 -37084231 + L1MCc LINE L1 62 274 -6149 * 667 264 27 49 chr13 64788934 64789263 -37083906 + L1MCc LINE L1 1984 2305 -4817 532 234 192 23 chr13 64789602 64789816 -37083353 + MIR SINE MIR 12 261 -1 285 333 49 37 chr13 64791173 64791335 -37081834 - MIR3 SINE MIR -35 173 10 458 245 68 61 chr13 64791394 64791541 -37081628 + MIR SINE MIR 26 173 -89 1158 134 22 0 chr13 64791953 64792132 -37081037 - L1PB3 LINE L1 -5 6149 5967 2949 104 7 2 chr13 64792134 64792618 -37080551 + MER1A DNA MER1_type 3 529 0 3441 122 4 2 chr13 64792620 64793127 -37080042 - L1PB3 LINE L1 -182 5972 5465 396 0 0 0 chr13 64793222 64793266 -37079903 + (CA)n Simple_repeat Simple_repeat 2 45 0 870 171 23 0 chr13 64793305 64793481 -37079688 - MER96B DNA MER1_type? -237 180 1 443 264 16 8 chr13 64793594 64793719 -37079450 + LTR67 LTR ERVL 418 543 -14 2133 52 63 0 chr13 64793729 64793999 -37079170 + AluY SINE Alu 17 303 -8 228 294 61 49 chr13 64794300 64794514 -37078655 + MIR SINE MIR 1 255 -7 237 306 83 0 chr13 64794710 64794782 -37078387 - MER91C DNA MER1_type -39 101 24 253 0 54 0 chr13 64795805 64795842 -37077327 + (TTG)n Simple_repeat Simple_repeat 1 39 0 1970 134 20 0 chr13 64797086 64797391 -37075778 + AluSq SINE Alu 1 311 -2 2036 137 64 20 chr13 64797944 64798352 -37074817 + L1MA8 LINE L1 5865 6290 -1 309 231 103 0 chr13 64798475 64798553 -37074616 + MER5C DNA MER1_type 35 120 -204 4925 117 17 9 chr13 64798558 64799066 -37074103 - L1MA4A LINE L1 -6 6297 5779 2145 129 13 0 chr13 64799066 64799369 -37073800 - AluSx SINE Alu -5 307 1 4925 117 17 9 chr13 64799369 64799630 -37073539 - L1MA4A LINE L1 -524 5779 5522 342 165 13 38 chr13 64799651 64799730 -37073439 + L1M2 LINE L1 5432 5508 -789 594 191 155 26 chr13 64799730 64799924 -37073245 + MER5C DNA MER1_type 106 324 0 388 285 185 6 chr13 64799925 64800085 -37073084 - MIR SINE MIR -56 206 28 742 228 54 0 chr13 64800470 64800654 -37072515 - L1MD3 LINE L1 -18 7977 7784 255 328 138 0 chr13 64801013 64801129 -37072040 - L2 LINE L2 -8 3264 3133 1158 263 84 42 chr13 64801611 64802108 -37071061 + MER115 DNA AcHobo 138 692 -1 491 262 116 27 chr13 64802903 64803174 -37069995 + L1MDa LINE L1 1625 2015 -886 2160 116 0 13 chr13 64803394 64803695 -37069474 + AluSc SINE Alu 2 298 -11 23 78 0 0 chr13 64803871 64803922 -37069247 + AT_rich Low_complexity Low_complexity 1 51 0 490 284 94 67 chr13 64803970 64804322 -37068847 + L1MDa LINE L1 2543 2884 -3656 957 105 111 0 chr13 64804322 64804484 -37068685 + L1PA14 LINE L1 5976 6155 -6 490 284 94 67 chr13 64804484 64805108 -37068061 + L1MDa LINE L1 2884 3490 -3050 1972 114 0 7 chr13 64805108 64805381 -37067788 + AluSq SINE Alu 4 274 -39 490 284 94 67 chr13 64805381 64805990 -37067179 + L1MDa LINE L1 3490 4172 -2368 374 351 75 75 chr13 64807597 64807854 -37065315 - L2 LINE L2 -443 2871 2612 2051 134 0 3 chr13 64807854 64808144 -37065025 + AluSx SINE Alu 9 297 -15 374 351 75 75 chr13 64808144 64808311 -37064858 - L2 LINE L2 -701 2613 2447 417 178 20 20 chr13 64808338 64808439 -37064730 - Looper DNA T2_type 0 1558 1458 618 147 18 9 chr13 64808443 64808552 -37064617 + L1MC1 LINE L1 6224 6333 0 5074 138 53 2 chr13 64808553 64808647 -37064522 + L1PB4 LINE L1 5195 5283 -1020 222 91 0 0 chr13 64808647 64808680 -37064489 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5074 138 53 2 chr13 64808680 64809147 -37064022 + L1PB4 LINE L1 5283 5724 -579 441 0 0 0 chr13 64809147 64809196 -37063973 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 5074 138 53 2 chr13 64809196 64809567 -37063602 + L1PB4 LINE L1 5724 6303 0 1076 221 4 4 chr13 64809582 64809836 -37063333 - Looper DNA T2_type -83 1475 1222 779 300 83 28 chr13 64809885 64810855 -37062314 - L1MC4a LINE L1 -747 5399 4835 452 292 72 15 chr13 64810906 64811276 -37061893 - LTR33 LTR ERVL -62 459 33 21 36 0 0 chr13 64811347 64811375 -37061794 + AT_rich Low_complexity Low_complexity 1 28 0 6290 139 4 6 chr13 64811767 64812128 -37061041 - L1PB1 LINE L1 0 6151 5791 231 36 0 0 chr13 64812128 64812156 -37061013 + (TA)n Simple_repeat Simple_repeat 1 28 0 2290 98 13 3 chr13 64812163 64812470 -37060699 - AluSq SINE Alu -3 310 1 6290 139 4 6 chr13 64812470 64813470 -37059699 - L1PB1 LINE L1 -366 5785 4785 11897 185 14 27 chr13 64813507 64816283 -37056886 + L1M2 LINE L1 2754 5489 -1359 577 358 53 9 chr13 64816295 64816633 -37056536 - ERVL LTR ERVL -582 5182 4830 716 276 141 36 chr13 64816715 64817048 -37056121 - LTR33 LTR ERVL -62 459 92 300 281 68 47 chr13 64817265 64817603 -37055566 - L1MC4a LINE L1 -1313 4833 4489 189 74 0 0 chr13 64817827 64817854 -37055315 + (CA)n Simple_repeat Simple_repeat 2 28 0 303 308 77 0 chr13 64818123 64818227 -37054942 + L2 LINE L2 3196 3307 -6 273 268 106 8 chr13 64818251 64818374 -37054795 - L1MC4a LINE L1 -2275 3871 3737 2969 136 35 39 chr13 64818380 64818560 -37054609 - L1MA8 LINE L1 -2 6289 6110 1886 161 0 3 chr13 64818560 64818864 -37054305 + AluJo SINE Alu 1 303 -9 2969 136 35 39 chr13 64818864 64819281 -37053888 - L1MA8 LINE L1 -181 6110 5694 1654 197 72 57 chr13 64819294 64819687 -37053482 - LTR10A LTR ERV1 -61 548 143 2613 7 0 0 chr13 64819687 64819979 -37053190 + L1PA5 LINE L1 5856 6147 -7 1654 197 72 57 chr13 64819979 64820113 -37053056 - LTR10A LTR ERV1 -466 143 13 947 176 1 7 chr13 64820123 64820305 -37052864 - L1MA8 LINE L1 -510 5664 5516 376 312 60 41 chr13 64820449 64820766 -37052403 - L1MC4a LINE L1 -2571 3575 3253 733 171 0 0 chr13 64820770 64820887 -37052282 - FLAM_A SINE Alu -20 122 6 289 258 142 54 chr13 64820913 64821433 -37051736 - L1MC4a LINE L1 -2901 3245 2680 318 267 109 10 chr13 64821808 64821909 -37051260 + L2 LINE L2 3203 3313 0 452 231 210 11 chr13 64822573 64822759 -37050410 + Charlie1 DNA MER1_type 1983 2205 -556 1517 299 30 2 chr13 64822962 64823400 -37049769 - LTR16A LTR ERVL 0 450 1 4646 212 91 29 chr13 64823450 64823557 -37049612 - Charlie1a DNA MER1_type -1306 1455 1356 2107 134 0 0 chr13 64823557 64823848 -37049321 + AluSx SINE Alu 1 291 -21 4646 212 91 29 chr13 64823848 64824140 -37049029 - Charlie1a DNA MER1_type -1405 1356 1084 1906 158 3 3 chr13 64824140 64824438 -37048731 + AluJb SINE Alu 1 298 -14 4646 212 91 29 chr13 64824438 64824498 -37048671 - Charlie1a DNA MER1_type -1677 1084 1029 2226 89 7 7 chr13 64824498 64824837 -37048332 - AluSc SINE Alu 0 309 2 4646 212 91 29 chr13 64824837 64825745 -37047424 - Charlie1a DNA MER1_type -1732 1029 1 315 309 48 16 chr13 64828262 64828428 -37044741 + MIR SINE MIR 16 186 -76 1082 189 88 0 chr13 64828800 64828957 -37044212 - AluJo SINE Alu -29 283 98 220 0 86 0 chr13 64828957 64828992 -37044177 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1082 189 88 0 chr13 64828992 64829062 -37044107 - AluJo SINE Alu -214 98 36 1770 176 3 13 chr13 64829721 64830033 -37043136 + AluJb SINE Alu 1 309 -3 211 302 0 16 chr13 64830319 64830382 -37042787 - L2 LINE L2 -1 3312 3251 948 168 3 10 chr13 64833191 64833505 -37039664 + L1MB2 LINE L1 5798 6169 -2 225 293 49 0 chr13 64835609 64835691 -37037478 - L2 LINE L2 -33 3280 3195 2723 108 11 6 chr13 64836322 64836684 -37036485 + THE1B LTR MaLR 1 364 0 386 274 45 16 chr13 64837623 64837809 -37035360 - MIR SINE MIR -69 139 3 208 73 36 73 chr13 64839652 64839707 -37033462 + (CATTT)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr13 64839849 64839869 -37033300 + (TGG)n Simple_repeat Simple_repeat 1 20 0 5791 177 50 83 chr13 64842434 64843264 -37029905 + Tigger3b DNA MER2_type 1 777 -2251 2417 68 0 3 chr13 64843264 64843556 -37029613 + AluY SINE Alu 9 299 -12 5791 177 50 83 chr13 64843556 64843996 -37029173 + Tigger3b DNA MER2_type 777 1230 -1 279 294 165 0 chr13 64844101 64844210 -37028959 - L2 LINE L2 -8 3305 3179 22 0 0 0 chr13 64844307 64844329 -37028840 + AT_rich Low_complexity Low_complexity 1 22 0 1962 136 0 34 chr13 64844361 64844684 -37028485 + AluSx SINE Alu 1 312 0 2016 181 33 29 chr13 64844746 64845165 -37028004 - MSTB LTR MaLR -5 421 1 470 209 73 37 chr13 64845177 64845368 -37027801 + L1MDa LINE L1 1530 1727 -4813 207 100 0 0 chr13 64845392 64845422 -37027747 + (A)n Simple_repeat Simple_repeat 1 30 0 524 270 105 34 chr13 64845741 64846037 -37027132 + L1ME4a LINE L1 5731 6047 -74 187 367 109 7 chr13 64846108 64846255 -37026914 + L3 LINE CR1 1402 1563 -14 1189 367 35 26 chr13 64846824 64847845 -37025324 + ERVL LTR ERVL 4317 5346 -418 433 226 6 101 chr13 64847978 64848137 -37025032 + LTR16A1 LTR ERVL 8 151 -306 * 2708 139 36 11 chr13 64848131 64848578 -37024591 + LTR32 LTR ERVL 9 466 -5 430 272 134 43 chr13 64848610 64848886 -37024283 + LTR16A1 LTR ERVL 157 457 0 212 256 0 98 chr13 64848888 64848970 -37024199 - MER5A DNA MER1_type -8 181 108 1144 265 28 17 chr13 64850253 64850709 -37022460 + L1M4 LINE L1 4965 5420 -743 355 320 81 43 chr13 64850703 64851147 -37022022 - L1M4 LINE L1 -3369 4196 3736 * 312 175 0 18 chr13 64851285 64851342 -37021827 - Tigger5 DNA MER2_type 0 2323 2268 332 278 0 0 chr13 64851348 64851420 -37021749 - Tigger5 DNA MER2_type -2244 79 8 238 158 0 0 chr13 64851432 64851470 -37021699 - L1M4 LINE L1 -3976 3589 3552 202 220 0 70 chr13 64851612 64851712 -37021457 + T-rich Low_complexity Low_complexity 6 98 0 359 224 265 27 chr13 64852066 64852289 -37020880 - HAL1 LINE L1 -1801 706 431 1473 227 73 39 chr13 64852350 64852843 -37020326 + LTR53 LTR ERVL 3 512 -7 222 220 0 20 chr13 64852852 64852902 -37020267 + (TG)n Simple_repeat Simple_repeat 1 49 0 338 169 127 0 chr13 64852904 64852975 -37020194 - HAL1 LINE L1 -2126 381 302 752 216 70 12 chr13 64852990 64853161 -37020008 + MIR SINE MIR 33 213 -49 618 261 15 20 chr13 64853177 64853372 -37019797 + HAL1 LINE L1 12 205 -2302 331 254 0 0 chr13 64853826 64853889 -37019280 - L2 LINE L2 -39 3274 3212 1994 120 25 0 chr13 64853948 64854223 -37018946 - AluSx SINE Alu -30 282 1 494 266 35 0 chr13 64855305 64855418 -37017751 - L2 LINE L2 -8 3264 3148 367 190 0 0 chr13 64855896 64855954 -37017215 - AluJ/FRAM SINE Alu -13 289 232 2144 102 10 3 chr13 64855994 64856288 -37016881 - AluSx SINE Alu -16 296 1 834 167 0 14 chr13 64856290 64856428 -37016741 - AluJo SINE Alu -171 141 6 307 274 99 44 chr13 64856432 64856575 -37016594 + MIR SINE MIR 20 176 -32 240 361 36 29 chr13 64856650 64856924 -37016245 - L2 LINE L2 -112 3201 2926 508 285 186 23 chr13 64858275 64858496 -37014673 - MIR SINE MIR -3 259 3 291 316 112 51 chr13 64859517 64859909 -37013260 - L2 LINE L2 -638 2676 2261 2367 70 7 0 chr13 64859944 64860244 -37012925 + AluY SINE Alu 1 302 -9 1306 223 103 0 chr13 64860280 64860581 -37012588 - MER7A DNA MER2_type -3 343 14 285 284 68 0 chr13 64861192 64861280 -37011889 - MER96 DNA MER1_type? -81 94 1 186 282 14 42 chr13 64861280 64861351 -37011818 - MIR3 SINE MIR -134 74 6 279 305 158 45 chr13 64861367 64861613 -37011556 + L2 LINE L2 2999 3272 0 1900 174 19 0 chr13 64862095 64862412 -37010757 - L1PA16 LINE L1 -21 6145 5823 2288 105 0 37 chr13 64862413 64862736 -37010433 + AluSx SINE Alu 1 311 -1 1015 233 36 45 chr13 64863253 64863583 -37009586 - MER63 DNA MER1_type 0 1061 735 219 69 0 0 chr13 64863831 64863860 -37009309 + (T)n Simple_repeat Simple_repeat 1 29 0 428 234 91 7 chr13 64864207 64864361 -37008808 + MLT1J LTR MaLR 189 355 -156 723 156 52 22 chr13 64865033 64865168 -37008001 - FLAM_C SINE Alu -3 140 2 322 291 57 25 chr13 64865496 64865654 -37007515 - L1MC4a LINE L1 -1877 5931 5769 1245 141 5 0 chr13 64865680 64865865 -37007304 - AluJb SINE Alu -126 186 1 5294 148 62 21 chr13 64867638 64868380 -37004789 + Tigger3b DNA MER2_type 1 798 -2230 2352 79 0 3 chr13 64868380 64868672 -37004497 + AluY SINE Alu 9 299 -12 5294 148 62 21 chr13 64868672 64868945 -37004224 + Tigger3b DNA MER2_type 798 1058 -173 4673 144 63 17 chr13 64869525 64870349 -37002820 - L1MA8 LINE L1 0 6291 5430 198 336 51 22 chr13 64870805 64870942 -37002227 - MIR SINE MIR -102 160 20 30 27 0 0 chr13 64871298 64871335 -37001834 + AT_rich Low_complexity Low_complexity 1 37 0 1019 118 33 0 chr13 64871491 64871643 -37001526 - AluSx SINE Alu 0 310 154 624 180 10 0 chr13 64871643 64871743 -37001426 - AluSx SINE Alu -211 101 1 274 263 0 0 chr13 64871818 64871894 -37001275 - L1PA16 LINE L1 -531 5771 5696 219 359 10 39 chr13 64871923 64872026 -37001143 + MER5A DNA MER1_type 64 163 -26 635 275 136 29 chr13 64872070 64872416 -37000753 - L1MC4a LINE L1 -525 5639 5257 1639 260 125 67 chr13 64872416 64872753 -37000416 - HAL1 LINE L1 -35 2472 2156 1749 168 13 29 chr13 64872753 64873069 -37000100 - AluJo SINE Alu -1 311 1 1639 260 125 67 chr13 64873069 64873890 -36999279 - HAL1 LINE L1 -351 2156 1238 180 0 0 0 chr13 64873890 64873910 -36999259 + (TC)n Simple_repeat Simple_repeat 2 21 0 1639 260 125 67 chr13 64873910 64873968 -36999201 - HAL1 LINE L1 -1269 1238 1185 1633 201 11 60 chr13 64873968 64874332 -36998837 - MLT1A1 LTR MaLR -17 348 3 1170 282 138 47 chr13 64874371 64875261 -36997908 - HAL1 LINE L1 -1435 1072 102 245 326 42 0 chr13 64876103 64876198 -36996971 - MIR SINE MIR -70 192 94 328 248 68 43 chr13 64877015 64877132 -36996037 + MIR SINE MIR 87 206 -56 291 140 0 0 chr13 64877149 64877199 -36995970 + (A)n Simple_repeat Simple_repeat 1 50 0 314 164 179 0 chr13 64877311 64877378 -36995791 - MADE1 DNA Mariner -1 79 1 1248 213 62 151 chr13 64877695 64877767 -36995402 - MSTB2 LTR MaLR 0 457 380 2173 97 10 10 chr13 64877767 64878066 -36995103 + AluSc SINE Alu 1 299 -10 1248 213 62 151 chr13 64878066 64878463 -36994706 - MSTB2 LTR MaLR -77 380 1 235 309 56 32 chr13 64878671 64878797 -36994372 - L2 LINE L2 0 3313 3185 236 245 93 65 chr13 64879104 64879243 -36993926 - MIR SINE MIR -1 261 119 2319 171 25 52 chr13 64879320 64879758 -36993411 + MSTB LTR MaLR 1 426 0 324 326 22 56 chr13 64879780 64879958 -36993211 - L2 LINE L2 -17 3255 3084 2232 169 31 32 chr13 64880337 64880888 -36992281 - MLT2A2 LTR ERVL 0 554 1 1140 209 156 38 chr13 64881064 64881403 -36991766 + MLT1C LTR MaLR 87 465 -2 226 232 101 0 chr13 64881855 64881924 -36991245 - L2 LINE L2 -42 3230 3155 294 250 25 0 chr13 64882112 64882192 -36990977 + (AGGTG)n Simple_repeat Simple_repeat 3 84 0 181 333 57 35 chr13 64882248 64882389 -36990780 + MIR SINE MIR 91 234 -28 214 342 79 18 chr13 64882767 64882881 -36990288 + L2 LINE L2 3151 3271 -1 689 155 8 0 chr13 64882881 64883010 -36990159 + GA-rich Low_complexity Low_complexity 1 130 0 296 213 62 106 chr13 64885160 64885320 -36987849 + L2 LINE L2 2653 2805 -509 233 239 28 14 chr13 64886501 64886572 -36986597 - MER94 DNA DNA -62 72 1 2956 87 0 6 chr13 64886631 64886997 -36986172 - THE1B LTR MaLR 0 364 1 582 86 0 0 chr13 64887653 64887734 -36985435 + (TG)n Simple_repeat Simple_repeat 2 82 0 1727 177 0 25 chr13 64888708 64889025 -36984144 + AluJb SINE Alu 1 309 -3 238 330 78 45 chr13 64890091 64890270 -36982899 + L2 LINE L2 2898 3082 -190 365 289 27 19 chr13 64891179 64891346 -36981823 + MLT1H1 LTR MaLR 1 172 -375 341 222 97 0 chr13 64891543 64891615 -36981554 + Tigger4(Zombi) DNA MER2_type 1 79 -2652 * 5245 127 27 18 chr13 64891609 64892462 -36980707 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 1425 195 134 13 chr13 64892467 64892774 -36980395 + MER2 DNA MER2_type 1 344 0 2232 137 0 3 chr13 64892812 64893126 -36980043 + AluSq SINE Alu 1 313 0 1833 242 14 7 chr13 64893284 64893705 -36979464 + L1MEc LINE L1 35 458 -5938 1948 42 0 0 chr13 64893772 64894009 -36979160 - L1PA4 LINE L1 -1488 4658 4422 7929 33 6 0 chr13 64894009 64895511 -36977658 + L1PA4 LINE L1 4661 6167 0 310 301 30 6 chr13 64895528 64895694 -36977475 + L1M4 LINE L1 5030 5199 -947 1507 191 8 0 chr13 64895697 64895959 -36977210 + AluJb SINE Alu 1 264 -48 216 0 0 0 chr13 64896078 64896102 -36977067 + (TG)n Simple_repeat Simple_repeat 2 25 0 271 319 55 0 chr13 64896283 64896374 -36976795 + L2 LINE L2 3137 3232 -40 366 23 0 0 chr13 64896644 64896687 -36976482 + (CA)n Simple_repeat Simple_repeat 2 44 0 230 203 0 17 chr13 64896745 64896804 -36976365 + GA-rich Low_complexity Low_complexity 3 60 0 661 171 55 91 chr13 64896880 64897079 -36976090 + MER110A LTR ERV1 49 240 -228 194 276 17 0 chr13 64897369 64897427 -36975742 - MIR SINE MIR -4 258 200 21 0 0 0 chr13 64898554 64898575 -36974594 + AT_rich Low_complexity Low_complexity 1 21 0 1062 16 0 0 chr13 64898692 64898813 -36974356 + AluY SINE Alu 186 306 -5 227 317 92 43 chr13 64899903 64900067 -36973102 + L2 LINE L2 2885 3056 -257 193 366 40 40 chr13 64900284 64900385 -36972784 + L2 LINE L2 3169 3269 -3 2095 109 4 0 chr13 64902034 64902310 -36970859 + AluSg SINE Alu 8 284 -26 23 33 0 0 chr13 64902310 64902340 -36970829 + AT_rich Low_complexity Low_complexity 1 30 0 1713 166 30 7 chr13 64902390 64902685 -36970484 - AluJb SINE Alu -10 302 1 1484 210 78 37 chr13 64903143 64903756 -36969413 + MER20B DNA MER1_type 6 783 0 23 54 0 0 chr13 64905384 64905421 -36967748 + AT_rich Low_complexity Low_complexity 1 37 0 2364 170 23 51 chr13 64905608 64906121 -36967048 - L1ME1 LINE L1 -1188 4958 4460 * 2395 191 45 65 chr13 64906120 64906227 -36966942 + L1ME1 LINE L1 4977 5085 -1081 2223 117 0 0 chr13 64906227 64906526 -36966643 - AluSg SINE Alu -11 299 1 2395 191 45 65 chr13 64906526 64906895 -36966274 + L1ME1 LINE L1 5085 5460 -706 2137 131 0 0 chr13 64906895 64907192 -36965977 - AluSc SINE Alu -12 297 1 2395 191 45 65 chr13 64907192 64907830 -36965339 + L1ME1 LINE L1 5460 6014 -152 776 200 19 7 chr13 64907832 64907987 -36965182 + L1MA10 LINE L1 6176 6332 -2 2341 79 3 3 chr13 64908052 64908344 -36964825 - AluSc SINE Alu -17 292 1 2206 140 18 15 chr13 64909523 64909859 -36963310 - MER1B DNA MER1_type 0 337 1 217 296 41 41 chr13 64909901 64909999 -36963170 + MIR SINE MIR 154 251 -11 234 370 22 30 chr13 64910001 64910136 -36963033 - MIR3 SINE MIR -73 135 2 722 248 70 7 chr13 64910650 64910920 -36962249 + L2 LINE L2 2415 2701 -613 2243 108 0 0 chr13 64910974 64911270 -36961899 - AluSg SINE Alu -9 301 6 644 240 76 96 chr13 64911370 64911876 -36961293 + L2 LINE L2 2689 3182 -131 334 282 101 62 chr13 64911902 64912111 -36961058 - MIR SINE MIR -26 236 20 853 164 0 14 chr13 64912116 64912256 -36960913 + AluJo SINE Alu 6 143 -169 2388 81 3 0 chr13 64912256 64912551 -36960618 + AluSx SINE Alu 1 296 -16 367 190 0 0 chr13 64912591 64912649 -36960520 + AluJ/FRAM SINE Alu 232 289 -13 494 266 35 0 chr13 64913127 64913240 -36959929 + L2 LINE L2 3148 3264 -8 2429 135 40 44 chr13 64913880 64914310 -36958859 + MSTA LTR MaLR 1 428 0 436 309 29 29 chr13 64914388 64914563 -36958606 - MIR SINE MIR 0 262 88 322 340 79 19 chr13 64915782 64916161 -36957008 - L1M4 LINE L1 -3366 2780 2379 448 277 134 8 chr13 64916328 64916566 -36956603 - L1M4 LINE L1 -3766 2380 2113 234 253 27 27 chr13 64917141 64917216 -36955953 + MIR SINE MIR 132 206 -56 348 228 54 0 chr13 64917491 64917583 -36955586 + MIR SINE MIR 61 157 -105 25 0 0 0 chr13 64918988 64919013 -36954156 + AT_rich Low_complexity Low_complexity 1 25 0 240 254 0 0 chr13 64919461 64919516 -36953653 + (CA)n Simple_repeat Simple_repeat 2 56 0 2194 129 0 0 chr13 64919573 64919876 -36953293 - AluSx SINE Alu 0 312 10 758 278 24 0 chr13 64920235 64920440 -36952729 - L2 LINE L2 0 3313 3104 3445 295 44 39 chr13 64920443 64920799 -36952370 - L2 LINE L2 -570 2744 2391 2398 116 38 0 chr13 64920799 64921144 -36952025 + L1PB1 LINE L1 5793 6150 -1 3445 295 44 39 chr13 64921144 64921859 -36951310 - L2 LINE L2 -923 2391 1661 2032 125 4 0 chr13 64921859 64922166 -36951003 + AluSx SINE Alu 1 308 0 3445 295 44 39 chr13 64922166 64922535 -36950634 - L2 LINE L2 -1653 1661 1295 189 413 0 32 chr13 64922865 64922991 -36950178 + MIR SINE MIR 30 151 -57 442 293 83 58 chr13 64923081 64923429 -36949740 + HAL1 LINE L1 1 357 -2150 346 251 101 17 chr13 64926071 64926247 -36946922 - MIR SINE MIR -46 216 23 247 250 10 10 chr13 64926380 64926476 -36946693 + GA-rich Low_complexity Low_complexity 2 97 0 222 299 142 39 chr13 64929159 64929238 -36943931 - L2 LINE L2 -1 3271 3173 555 79 0 0 chr13 64929238 64929314 -36943855 + MADE1 DNA Mariner 4 79 -1 222 299 142 39 chr13 64929314 64929361 -36943808 - L2 LINE L2 -99 3173 3132 327 234 40 109 chr13 64930021 64930196 -36942973 + MLT1I LTR MaLR 232 394 -15 322 292 124 0 chr13 64930237 64930422 -36942747 + MER113 DNA MER1_type? 2 209 -312 278 305 49 0 chr13 64930557 64930639 -36942530 + MIR SINE MIR 53 138 -70 22 35 0 0 chr13 64930686 64930715 -36942454 + AT_rich Low_complexity Low_complexity 1 29 0 324 278 93 19 chr13 64930848 64930956 -36942213 + L2 LINE L2 3148 3263 -9 448 250 73 37 chr13 64931379 64931543 -36941626 + MIR SINE MIR 93 262 0 2451 97 0 0 chr13 64931620 64931929 -36941240 - AluSc SINE Alu 0 309 1 2767 78 95 5 chr13 64932212 64932622 -36940547 + LTR7 LTR ERV1 2 448 -2 19767 82 8 26 chr13 64932624 64935665 -36937504 + HERVH LTR ERV1 1 2987 -4726 863 135 20 0 chr13 64935659 64935807 -36937362 + HERVH LTR ERV1 3140 3290 -4423 * 3255 99 4 6 chr13 64935797 64936300 -36936869 + HERVH LTR ERV1 3492 3993 -3720 3804 132 40 16 chr13 64936302 64936948 -36936221 + HERVH LTR ERV1 4488 5149 -2564 1272 139 23 0 chr13 64936949 64937164 -36936005 + HERVH LTR ERV1 5600 5819 -1894 2331 92 42 13 chr13 64937164 64937543 -36935626 + HERVH LTR ERV1 7324 7713 0 2922 61 95 0 chr13 64937543 64937952 -36935217 + LTR7 LTR ERV1 1 448 -2 2032 116 140 8 chr13 64937954 64938326 -36934843 + MSTA LTR MaLR 8 428 0 196 319 28 0 chr13 64941657 64941729 -36931440 - MIR SINE MIR 0 262 189 1471 231 0 19 chr13 64941746 64942062 -36931107 + AluJo SINE Alu 1 310 -2 442 76 38 25 chr13 64942062 64942141 -36931028 + GA-rich Low_complexity Low_complexity 1 80 0 2224 122 0 0 chr13 64942501 64942813 -36930356 - AluSx SINE Alu 0 312 1 731 147 126 0 chr13 64942835 64942978 -36930191 - FAM SINE Alu -13 162 2 10067 111 17 3 chr13 64942990 64944551 -36928618 + Tigger1 DNA MER2_type 55 1637 -781 1240 132 59 0 chr13 64944538 64944757 -36928412 + Tigger1 DNA MER2_type 2187 2418 0 * 254 240 0 27 chr13 64945032 64945107 -36928062 + (TA)n Simple_repeat Simple_repeat 1 73 0 180 152 0 0 chr13 64946922 64946955 -36926214 + MIR3 SINE MIR 171 203 -5 1385 226 55 87 chr13 64947742 64948365 -36924804 - L1ME3A LINE L1 -5 6165 5563 721 147 7 14 chr13 64949160 64949303 -36923866 + CT-rich Low_complexity Low_complexity 3 144 0 1059 159 6 0 chr13 64949489 64949652 -36923517 + AluJb SINE Alu 131 294 -18 24 67 0 0 chr13 64949769 64949814 -36923355 + AT_rich Low_complexity Low_complexity 1 45 0 24 77 0 0 chr13 64949950 64950002 -36923167 + AT_rich Low_complexity Low_complexity 1 52 0 250 211 0 0 chr13 64950238 64950290 -36922879 + L1ME2 LINE L1 5936 5987 -177 639 326 22 43 chr13 64951054 64951284 -36921885 + L2 LINE L2 2985 3209 -63 394 301 77 11 chr13 64951613 64951796 -36921373 - MER117 DNA MER1_type -2 195 1 386 294 48 8 chr13 64951796 64951922 -36921247 - MIR3 SINE MIR -48 160 30 192 125 0 0 chr13 64951995 64952027 -36921142 + (TA)n Simple_repeat Simple_repeat 1 32 0 438 262 87 38 chr13 64953248 64953431 -36919738 + LTR50 LTR ERVL 7 198 -597 1819 183 20 0 chr13 64953639 64953984 -36919185 - Tigger6 DNA MER2_type -1238 359 8 405 299 75 6 chr13 64955298 64955472 -36917697 - MIR SINE MIR -3 259 74 748 294 178 27 chr13 64956371 64956996 -36916173 + L2 LINE L2 1786 2504 -810 209 346 37 0 chr13 64958052 64958188 -36914981 + L2 LINE L2 1713 1853 -1461 37066 67 27 3 chr13 64958197 64964194 -36908975 + L1PA5 LINE L1 1 6145 -9 180 0 0 0 chr13 64964194 64964214 -36908955 + (CAT)n Simple_repeat Simple_repeat 2 21 0 347 268 67 46 chr13 64964252 64964446 -36908723 + L2 LINE L2 1889 2086 -1228 302 341 121 49 chr13 64964572 64964836 -36908333 + L2 LINE L2 2866 3148 -124 1391 187 31 0 chr13 64965238 64965527 -36907642 - L1MD1 LINE L1 0 6242 5945 914 201 0 0 chr13 64965560 64965719 -36907450 - FRAM SINE Alu -7 159 1 2262 127 194 78 chr13 64965748 64966298 -36906871 + LTR18B LTR ERVL 1 614 0 707 175 0 0 chr13 64966318 64966432 -36906737 - FLAM_C SINE Alu -29 114 1 1756 232 118 32 chr13 64966432 64967151 -36906018 - L1M4 LINE L1 -1830 4316 3536 428 264 0 0 chr13 64967154 64967245 -36905924 - MER5B DNA MER1_type -68 110 20 1513 203 27 3 chr13 64967840 64968141 -36905028 + AluJb SINE Alu 3 310 -2 31 26 0 0 chr13 64969972 64970010 -36903159 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr13 64972433 64972458 -36900711 + AT_rich Low_complexity Low_complexity 1 25 0 360 0 0 0 chr13 64974323 64974363 -36898806 + (TG)n Simple_repeat Simple_repeat 2 41 0 621 230 52 0 chr13 64975509 64975644 -36897525 - MIR3 SINE MIR -23 185 44 180 77 0 0 chr13 64976021 64976047 -36897122 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 508 277 58 15 chr13 64976047 64976184 -36896985 - L2 LINE L2 -13 3259 3117 433 307 97 6 chr13 64976392 64976568 -36896601 + MIR SINE MIR 20 211 -51 32 43 0 0 chr13 64976614 64976660 -36896509 + AT_rich Low_complexity Low_complexity 1 46 0 240 111 0 0 chr13 64978021 64978057 -36895112 + (T)n Simple_repeat Simple_repeat 1 36 0 276 172 0 0 chr13 64978080 64978138 -36895031 + T-rich Low_complexity Low_complexity 1 58 0 210 71 0 0 chr13 64978873 64978901 -36894268 + (A)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr13 64979242 64979263 -36893906 + AT_rich Low_complexity Low_complexity 1 21 0 253 253 149 46 chr13 64980010 64980097 -36893072 + L2 LINE L2 3193 3288 -25 24 32 0 0 chr13 64981051 64981082 -36892087 + AT_rich Low_complexity Low_complexity 1 31 0 6072 138 53 43 chr13 64983080 64984297 -36888872 + Tigger3b DNA MER2_type 2 1231 0 1923 171 0 0 chr13 64985802 64986100 -36887069 + AluJb SINE Alu 3 300 -12 415 331 125 10 chr13 64986161 64986457 -36886712 + L1MC5 LINE L1 4023 4352 -1794 735 207 6 29 chr13 64986566 64986740 -36886429 + L1PA16 LINE L1 5997 6166 0 216 0 0 0 chr13 64987470 64987494 -36885675 + (A)n Simple_repeat Simple_repeat 1 24 0 428 256 116 0 chr13 64987761 64987882 -36885287 + L1MC5 LINE L1 5488 5622 -2186 1094 238 48 38 chr13 64988096 64988492 -36884677 + L1MC5 LINE L1 6639 7062 -980 343 203 142 7 chr13 64988498 64988646 -36884523 + L1MC5 LINE L1 7527 7694 -267 520 236 31 37 chr13 64988746 64988907 -36884262 + L1MC5 LINE L1 7726 7885 -76 342 143 0 16 chr13 64989147 64989210 -36883959 + MER103 DNA DNA 12 73 -93 21 0 0 0 chr13 64989502 64989523 -36883646 + AT_rich Low_complexity Low_complexity 1 21 0 202 200 25 0 chr13 64989658 64989698 -36883471 + L2 LINE L2 3216 3256 -16 195 42 0 0 chr13 64989712 64989736 -36883433 + (CA)n Simple_repeat Simple_repeat 2 25 0 1709 158 25 0 chr13 64989806 64990090 -36883079 - AluJb SINE Alu -21 291 1 2190 80 0 51 chr13 64990125 64990437 -36882732 + AluY SINE Alu 1 296 -15 25 105 0 0 chr13 64993030 64993125 -36880044 + AT_rich Low_complexity Low_complexity 1 95 0 250 310 100 20 chr13 64993607 64993707 -36879462 - MIR SINE MIR -64 144 37 634 231 113 25 chr13 64993988 64994226 -36878943 + MIR SINE MIR 4 262 0 23 33 0 0 chr13 64995077 64995107 -36878062 + AT_rich Low_complexity Low_complexity 1 30 0 189 239 0 0 chr13 64996617 64996663 -36876506 - L2 LINE L2 0 3313 3268 2002 110 25 3 chr13 64996722 64997004 -36876165 + AluSx SINE Alu 1 288 -24 246 280 168 0 chr13 64997110 64997217 -36875952 + L2 LINE L2 3188 3312 -1 793 349 146 8 chr13 64997336 64997823 -36875346 - L2 LINE L2 -469 2845 2292 2202 121 38 43 chr13 64997923 64998346 -36874823 + L1MA7 LINE L1 5869 6289 -2 275 242 126 0 chr13 64998458 64998553 -36874616 - MER103 DNA DNA -3 163 57 355 322 62 20 chr13 65000106 65000252 -36872917 + L2 LINE L2 2543 2694 -620 838 236 157 51 chr13 65000319 65000994 -36872175 + L1MC4 LINE L1 5877 6526 -1282 1220 158 102 0 chr13 65002398 65002663 -36870506 - MER33 DNA MER1_type -7 317 26 469 286 8 23 chr13 65004336 65004469 -36868700 + MIR3 SINE MIR 54 184 -24 317 263 81 10 chr13 65004470 65004569 -36868600 + L2 LINE L2 3193 3298 -15 1673 151 25 14 chr13 65005178 65005462 -36867707 - AluJb SINE Alu -25 287 1 450 204 63 21 chr13 65006045 65006187 -36866982 - MER104 DNA Tc2 -29 151 4 1573 249 103 33 chr13 65006408 65007067 -36866102 - L1M4 LINE L1 -1823 4323 3619 296 177 10 188 chr13 65007743 65007839 -36865330 - Tigger5 DNA MER2_type -1 2322 2242 257 278 0 0 chr13 65007836 65007890 -36865279 - Tigger5 DNA MER2_type -2269 54 1 * 1884 116 84 0 chr13 65007890 65008210 -36864959 - L1MA8 LINE L1 -31 6260 5914 25 0 0 0 chr13 65008422 65008447 -36864722 + AT_rich Low_complexity Low_complexity 1 25 0 2175 89 10 0 chr13 65008490 65008781 -36864388 - AluSg SINE Alu -16 294 1 593 110 178 17 chr13 65010075 65010193 -36862976 - L1MA6 LINE L1 0 6300 6164 25 0 0 0 chr13 65010425 65010450 -36862719 + AT_rich Low_complexity Low_complexity 1 25 0 206 378 66 33 chr13 65010738 65010889 -36862280 - L2 LINE L2 -848 2466 2311 256 344 184 0 chr13 65011044 65011207 -36861962 + MIR3 SINE MIR 11 203 -5 567 242 47 13 chr13 65011459 65011640 -36861529 - MIR SINE MIR -65 143 1 23 0 0 0 chr13 65012300 65012323 -36860846 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 65013061 65013082 -36860087 + AT_rich Low_complexity Low_complexity 1 21 0 341 318 145 37 chr13 65013744 65013958 -36859211 - MIR SINE MIR -19 243 7 1686 179 0 22 chr13 65014867 65015185 -36857984 + AluJb SINE Alu 1 311 -1 471 291 163 15 chr13 65015197 65015393 -36857776 + MIR SINE MIR 34 258 -4 231 216 11 57 chr13 65015547 65015635 -36857534 + L1MC/D LINE L1 5361 5444 -2341 23 0 0 0 chr13 65015651 65015674 -36857495 + AT_rich Low_complexity Low_complexity 1 23 0 37 23 0 0 chr13 65016111 65016155 -36857014 + AT_rich Low_complexity Low_complexity 1 44 0 2382 90 0 0 chr13 65016668 65016969 -36856200 - AluSq SINE Alu -12 301 1 21 36 0 0 chr13 65017598 65017626 -36855543 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr13 65018573 65018607 -36854562 + AT_rich Low_complexity Low_complexity 1 34 0 829 175 44 19 chr13 65018629 65018789 -36854380 + Tigger7 DNA MER2_type 2 165 -385 1652 146 45 16 chr13 65018791 65019099 -36854070 + Tigger7 DNA MER2_type 2271 2587 0 709 319 64 36 chr13 65020041 65020650 -36852519 + L2 LINE L2 1583 2208 -1106 400 338 119 48 chr13 65020831 65021251 -36851918 + L2 LINE L2 2219 2668 -646 418 248 71 9 chr13 65021385 65021498 -36851671 + LTR67 LTR ERVL 364 483 -74 21 36 0 0 chr13 65022076 65022104 -36851065 + AT_rich Low_complexity Low_complexity 1 28 0 1869 142 7 7 chr13 65023947 65024254 -36848915 + AluSx SINE Alu 1 307 0 27 29 0 0 chr13 65025732 65025766 -36847403 + AT_rich Low_complexity Low_complexity 1 34 0 1910 141 51 96 chr13 65025856 65025911 -36847258 + MSTB LTR MaLR 1 57 -318 2141 122 0 0 chr13 65025911 65026222 -36846947 + AluSx SINE Alu 1 311 -1 1910 141 51 96 chr13 65026222 65026612 -36846557 + MSTB LTR MaLR 57 375 0 2323 84 3 7 chr13 65026802 65027112 -36846057 - AluY SINE Alu -2 309 1 30 89 0 0 chr13 65027852 65027931 -36845238 + AT_rich Low_complexity Low_complexity 1 79 0 1863 249 116 26 chr13 65028578 65028816 -36844353 - L1ME1 LINE L1 -9 6157 5942 2055 113 0 26 chr13 65028816 65029126 -36844043 + AluSx SINE Alu 3 304 -8 1863 249 116 26 chr13 65029126 65029567 -36843602 - L1ME1 LINE L1 -224 5942 5417 184 257 0 0 chr13 65030409 65030444 -36842725 - MIR SINE MIR -19 243 209 2094 124 0 7 chr13 65030785 65031092 -36842077 + AluSg SINE Alu 1 305 -5 32 75 0 0 chr13 65031120 65031187 -36841982 + AT_rich Low_complexity Low_complexity 1 67 0 394 105 64 18 chr13 65031484 65031655 -36841514 + (TA)n Simple_repeat Simple_repeat 1 179 0 313 49 90 25 chr13 65031790 65031912 -36841257 + (TA)n Simple_repeat Simple_repeat 2 131 0 1869 142 0 57 chr13 65032345 65032663 -36840506 + AluSx SINE Alu 2 301 -11 509 111 41 18 chr13 65033166 65033337 -36839832 + (TA)n Simple_repeat Simple_repeat 2 176 0 2186 113 7 0 chr13 65033337 65033628 -36839541 - AluSq SINE Alu -20 293 1 254 252 29 10 chr13 65033853 65033956 -36839213 + (TA)n Simple_repeat Simple_repeat 1 105 0 472 295 139 6 chr13 65034135 65034301 -36838868 - MIR SINE MIR -52 210 23 1498 193 30 27 chr13 65034356 65034652 -36838517 - AluJo SINE Alu -11 301 5 2520 195 77 10 chr13 65034937 65035454 -36837715 + MER68 LTR ERV1 11 562 0 1832 109 61 64 chr13 65035802 65036113 -36837056 + AluSx SINE Alu 1 310 -2 2210 108 3 0 chr13 65036600 65036897 -36836272 - AluSx SINE Alu -14 298 1 1652 163 13 46 chr13 65037409 65037716 -36835453 + AluJo SINE Alu 1 297 -15 975 258 124 33 chr13 65037975 65038549 -36834620 + L1MC4a LINE L1 5315 5940 -1868 2434 119 45 0 chr13 65038667 65039071 -36834098 - L1MA5 LINE L1 -16 6284 5863 466 253 57 44 chr13 65039279 65039437 -36833732 - MIR SINE MIR -101 161 2 22 99 0 0 chr13 65040339 65040410 -36832759 + AT_rich Low_complexity Low_complexity 1 71 0 917 316 114 31 chr13 65040810 65041352 -36831817 + L3 LINE CR1 898 1484 -93 400 271 55 141 chr13 65041723 65042218 -36830951 - L2 LINE L2 0 3313 2862 1582 179 19 26 chr13 65042402 65042715 -36830454 - AluJo SINE Alu -1 311 1 23 0 0 0 chr13 65043182 65043205 -36829964 + AT_rich Low_complexity Low_complexity 1 23 0 468 150 141 40 chr13 65043704 65043872 -36829297 - Charlie1 DNA MER1_type 0 2761 2569 387 253 175 42 chr13 65043956 65044122 -36829047 - MLT1K LTR MaLR -124 464 277 1025 163 43 73 chr13 65044232 65044540 -36828629 - Charlie1 DNA MER1_type -189 2572 5 23 0 0 0 chr13 65044565 65044588 -36828581 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 65044749 65044769 -36828400 + (A)n Simple_repeat Simple_repeat 1 20 0 1945 92 8 0 chr13 65046301 65046552 -36826617 - AluSx SINE Alu -58 254 2 566 169 11 0 chr13 65047699 65047788 -36825381 - 5S rRNA rRNA -30 91 2 1049 246 78 15 chr13 65048406 65048739 -36824430 + L1ME2 LINE L1 5785 6138 -26 301 208 252 13 chr13 65048796 65048955 -36824214 + L1MC4 LINE L1 7844 8040 -2 2027 122 7 0 chr13 65049594 65049881 -36823288 - AluSx SINE Alu -23 289 1 348 267 20 7 chr13 65050072 65050218 -36822951 + (TTATA)n Simple_repeat Simple_repeat 2 149 0 198 241 287 11 chr13 65050386 65050473 -36822696 + L2 LINE L2 2958 3068 -204 185 361 82 0 chr13 65050526 65050587 -36822582 + L2 LINE L2 3199 3264 -49 2493 40 10 0 chr13 65050820 65051116 -36822053 - AluY SINE Alu -12 299 1 242 137 20 42 chr13 65051471 65051531 -36821638 + MLT1G3 LTR MaLR 255 399 -196 218 192 0 19 chr13 65053726 65053778 -36819391 + (CCG)n Simple_repeat Simple_repeat 2 52 0 1100 166 63 56 chr13 65055226 65055528 -36817641 + L1MB3 LINE L1 5871 6174 -9 205 351 99 49 chr13 65055804 65056149 -36817020 + L2 LINE L2 2546 2907 -407 1290 205 93 38 chr13 65056155 65056575 -36816594 - LTR47B LTR ERVL 0 443 1 2567 206 49 49 chr13 65056864 65057516 -36815653 + MER82 DNA MER2_type 1 652 -1 1674 131 19 8 chr13 65058219 65058479 -36814690 + AluSx SINE Alu 18 280 -32 320 0 25 0 chr13 65058479 65058519 -36814650 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 371 330 34 0 chr13 65058635 65058753 -36814416 + LTR16A LTR ERVL 6 127 -323 398 261 53 36 chr13 65058849 65058997 -36814172 + LTR16B LTR ERVL 276 451 -13 2097 113 3 35 chr13 65059728 65060039 -36813130 + AluSq SINE Alu 1 301 -12 2092 108 7 0 chr13 65060100 65060387 -36812782 + AluSx SINE Alu 1 289 -23 371 306 106 70 chr13 65061226 65061443 -36811726 - L1 LINE L1 -1033 5113 4905 1849 146 58 0 chr13 65061443 65061738 -36811431 - AluSx SINE Alu 0 312 1 371 306 106 70 chr13 65061738 65061957 -36811212 - L1 LINE L1 -1241 4905 4695 1875 123 18 7 chr13 65061957 65062234 -36810935 + AluSx SINE Alu 1 280 -32 333 0 0 0 chr13 65062234 65062271 -36810898 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 371 306 106 70 chr13 65062271 65062377 -36810792 - L1 LINE L1 -1450 4696 4548 381 322 34 0 chr13 65062387 65062505 -36810664 + LTR16A LTR ERVL 6 127 -323 429 224 47 30 chr13 65062605 65062749 -36810420 + LTR16B LTR ERVL 236 451 -13 2109 112 3 35 chr13 65063480 65063793 -36809376 + AluSq SINE Alu 1 303 -10 2015 130 10 0 chr13 65063854 65064146 -36809023 + AluSx SINE Alu 1 295 -17 1713 168 26 19 chr13 65064148 65064457 -36808712 - AluSx SINE Alu -1 311 1 390 218 100 47 chr13 65064729 65064899 -36808270 + L1MC5 LINE L1 7747 7925 -36 415 259 98 0 chr13 65064973 65065085 -36808084 + L2 LINE L2 3191 3313 0 942 244 85 30 chr13 65065746 65066061 -36807108 - MLT1I LTR MaLR 0 409 76 929 156 50 148 chr13 65066316 65066579 -36806590 + MER33 DNA MER1_type 1 221 -2364 2148 114 0 10 chr13 65066579 65066877 -36806292 - AluSx SINE Alu -17 295 1 929 156 50 148 chr13 65066877 65066971 -36806198 + MER33 DNA MER1_type 221 323 -1 219 307 80 0 chr13 65067491 65067579 -36805590 - L2 LINE L2 -653 2661 2567 * 787 310 171 48 chr13 65067573 65068357 -36804812 + L2 LINE L2 1675 2554 -760 389 232 327 6 chr13 65068504 65068672 -36804497 - MIR SINE MIR -33 229 8 316 260 130 59 chr13 65069000 65069169 -36804000 + L2 LINE L2 2888 3068 -204 185 361 82 0 chr13 65069222 65069283 -36803886 + L2 LINE L2 3199 3264 -49 2493 40 10 0 chr13 65069515 65069811 -36803358 - AluY SINE Alu -12 299 1 242 137 20 42 chr13 65070235 65070295 -36802874 + MLT1G3 LTR MaLR 255 399 -196 309 391 0 8 chr13 65071414 65071542 -36801627 - MIR3 SINE MIR -15 193 67 216 0 0 0 chr13 65072110 65072134 -36801035 + (TG)n Simple_repeat Simple_repeat 2 25 0 2091 221 124 12 chr13 65072525 65073031 -36800138 - MLT1F1 LTR MaLR 0 567 5 957 186 60 0 chr13 65073128 65073343 -36799826 + MER63 DNA MER1_type 1 228 -833 * 1661 236 77 0 chr13 65073331 65073746 -36799423 + MER63 DNA MER1_type 614 1060 0 1471 127 0 14 chr13 65074214 65074427 -36798742 + AluSx SINE Alu 1 210 -102 189 74 0 0 chr13 65074459 65074486 -36798683 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1782 169 10 29 chr13 65075159 65075472 -36797697 - AluJo SINE Alu -1 311 5 2183 121 7 3 chr13 65075737 65076044 -36797125 - AluSq SINE Alu -5 308 1 414 251 68 68 chr13 65076046 65076385 -36796784 - L1MC4a LINE L1 -1797 6011 5673 343 154 55 66 chr13 65076584 65076766 -36796403 + (TA)n Simple_repeat Simple_repeat 1 180 0 328 315 57 64 chr13 65076845 65077251 -36795918 + L1MCc LINE L1 34 436 -5987 1340 153 13 21 chr13 65077450 65077685 -36795484 + MER50 LTR ERV1 479 711 -23 6021 148 44 3 chr13 65077686 65078791 -36794378 + MER50-int LTR ERV1 1 1231 -5974 2062 130 7 0 chr13 65078791 65079092 -36794077 - AluSx SINE Alu -9 303 1 908 278 67 11 chr13 65079125 65079624 -36793545 + L1MCc LINE L1 1129 1822 -4887 1394 191 34 50 chr13 65079629 65079927 -36793242 + AluJo SINE Alu 14 306 -6 419 241 79 62 chr13 65080046 65080386 -36792783 + L1MCc LINE L1 1979 2324 -4798 * 630 279 103 18 chr13 65080360 65080899 -36792270 + L1MCc LINE L1 3831 4433 -2508 1450 266 82 13 chr13 65080916 65081058 -36792111 + L1MCc LINE L1 4576 4707 -2234 2104 128 7 3 chr13 65081058 65081363 -36791806 + AluSx SINE Alu 1 306 -6 1450 266 82 13 chr13 65081363 65081590 -36791579 + L1MCc LINE L1 4707 4917 -2024 1888 101 4 25 chr13 65081590 65081866 -36791303 + AluY SINE Alu 39 308 -3 1450 266 82 13 chr13 65081866 65082043 -36791126 + L1MCc LINE L1 4917 5161 -1780 285 279 76 0 chr13 65083382 65083461 -36789708 + MIR SINE MIR 1 85 -177 831 183 129 107 chr13 65084370 65084726 -36788443 - MLT1A1 LTR MaLR -1 364 1 364 262 115 8 chr13 65085609 65085731 -36787438 + MIR SINE MIR 88 222 -40 330 269 194 6 chr13 65085860 65086020 -36787149 - MIR SINE MIR -59 203 14 279 344 107 52 chr13 65086625 65086956 -36786213 + L2 LINE L2 2724 3063 -209 246 195 110 110 chr13 65087010 65087092 -36786077 + L2 LINE L2 3186 3267 -5 722 183 56 0 chr13 65087773 65087915 -36785254 - MIR SINE MIR -107 155 6 896 284 268 28 chr13 65087919 65088931 -36784238 + L2 LINE L2 1822 3081 -232 570 98 0 0 chr13 65089693 65089775 -36783394 + (TA)n Simple_repeat Simple_repeat 2 83 0 2214 102 3 0 chr13 65089775 65090068 -36783101 - AluSx SINE Alu -18 294 1 1956 149 3 7 chr13 65090305 65090607 -36782562 - AluJb SINE Alu -11 301 1 1519 173 27 53 chr13 65090693 65091068 -36782101 - MLT1A1 LTR MaLR 0 365 1 901 145 61 98 chr13 65091225 65091439 -36781730 - Charlie4 DNA MER1_type -1755 206 1 3169 121 40 5 chr13 65092243 65092737 -36780432 - MER1A DNA MER1_type 0 529 1 486 267 60 7 chr13 65092954 65093104 -36780065 + LTR16A1 LTR ERVL 266 423 -34 1559 126 0 94 chr13 65093106 65093148 -36780021 + AluSx SINE Alu 1 45 -267 3588 70 9 0 chr13 65093148 65093602 -36779567 + LTR22A LTR ERVK 1 458 0 1559 126 0 94 chr13 65093602 65093836 -36779333 + AluSx SINE Alu 45 251 -61 286 188 94 0 chr13 65093838 65093902 -36779267 + LTR16A1 LTR ERVL 388 457 0 2397 100 0 0 chr13 65094673 65094982 -36778187 + AluSc SINE Alu 1 309 0 1990 138 36 51 chr13 65095533 65095924 -36777245 - MLT1B LTR MaLR -5 385 1 22 56 0 0 chr13 65095996 65096032 -36777137 + AT_rich Low_complexity Low_complexity 1 36 0 205 157 17 78 chr13 65096328 65096443 -36776726 + (TATAA)n Simple_repeat Simple_repeat 4 111 0 385 347 21 5 chr13 65096789 65096979 -36776190 + ERVL LTR ERVL 5239 5431 -333 466 242 30 15 chr13 65097271 65097403 -36775766 + LTR41 LTR ERVL 6 139 -634 1836 145 7 33 chr13 65097616 65097920 -36775249 - AluSx SINE Alu -16 296 1 284 224 229 12 chr13 65098090 65098260 -36774909 + LTR50 LTR ERVL 587 793 -2 613 239 213 0 chr13 65098935 65099090 -36774079 - MER5A DNA MER1_type -1 188 1 838 184 17 11 chr13 65100429 65100608 -36772561 + MER105 DNA DNA 2 181 -23 1402 178 184 3 chr13 65100656 65100965 -36772204 + MLT1A1 LTR MaLR 1 365 0 385 218 16 105 chr13 65101048 65101172 -36771997 + MER69 DNA AcHobo 29 2490 -36 542 168 0 8 chr13 65101458 65101577 -36771592 + CT-rich Low_complexity Low_complexity 4 121 0 243 295 0 0 chr13 65101592 65101653 -36771516 + GA-rich Low_complexity Low_complexity 4 64 0 219 114 0 0 chr13 65101769 65101804 -36771365 + (TG)n Simple_repeat Simple_repeat 2 36 0 1428 191 4 0 chr13 65102258 65102510 -36770659 + L1PB4 LINE L1 5897 6149 -7 195 42 0 0 chr13 65103470 65103494 -36769675 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1329 207 174 33 chr13 65103665 65104178 -36768991 + MER34C LTR ERV1 1 585 0 1356 257 104 50 chr13 65104592 65105670 -36767499 + HAL1 LINE L1 995 2174 -333 247 378 0 0 chr13 65105672 65105770 -36767399 + L2 LINE L2 3173 3270 -2 395 277 82 11 chr13 65105852 65106036 -36767133 + HAL1 LINE L1 2181 2377 -130 3626 152 45 15 chr13 65106053 65106535 -36766634 - LTR51 LTR ERV1 0 671 164 1988 128 49 0 chr13 65106535 65106823 -36766346 - AluSx SINE Alu -10 302 1 3626 152 45 15 chr13 65106823 65106992 -36766177 - LTR51 LTR ERV1 -507 164 1 517 264 5 108 chr13 65107389 65107601 -36765568 - MER91B DNA MER1_type 0 190 1 180 0 0 0 chr13 65107720 65107740 -36765429 + (T)n Simple_repeat Simple_repeat 1 20 0 659 311 72 8 chr13 65107985 65108220 -36764949 + MIR SINE MIR 13 262 0 465 282 85 73 chr13 65108285 65108544 -36764625 - MLT1J LTR MaLR -20 491 230 1013 221 57 54 chr13 65109275 65109592 -36763577 - MER99 DNA DNA -100 728 411 839 111 53 23 chr13 65109654 65109825 -36763344 - MER53 DNA DNA -2 187 12 666 196 0 15 chr13 65109919 65110052 -36763117 - FLAM_A SINE Alu -1 141 11 2231 109 6 3 chr13 65110307 65110618 -36762551 + AluSq SINE Alu 1 312 -1 271 205 52 71 chr13 65110812 65110915 -36762254 + MER5A DNA MER1_type 3 113 -65 237 323 98 71 chr13 65110977 65111373 -36761796 + L2 LINE L2 2566 2972 -342 285 373 62 31 chr13 65111374 65111567 -36761602 + L2 LINE L2 3074 3272 0 21 0 0 0 chr13 65111588 65111609 -36761560 + AT_rich Low_complexity Low_complexity 1 21 0 2189 72 58 0 chr13 65111609 65111885 -36761284 + AluSc SINE Alu 1 292 -17 2268 119 3 3 chr13 65112192 65112504 -36760665 - AluSq SINE Alu -1 312 1 1677 251 95 42 chr13 65112506 65113551 -36759618 - L1MC4a LINE L1 -747 5333 4846 25 75 0 0 chr13 65113773 65113826 -36759343 + AT_rich Low_complexity Low_complexity 1 53 0 484 276 51 67 chr13 65114028 65114433 -36758736 - L1MC4a LINE L1 -1905 4175 3776 2934 118 4 16 chr13 65114433 65114883 -36758286 + MER65A LTR ERV1 1 445 0 484 276 51 67 chr13 65114883 65114926 -36758243 - L1MC4a LINE L1 -2304 3776 3734 520 318 126 28 chr13 65115059 65115663 -36757506 - L1MC4a LINE L1 -2497 3583 2921 273 316 35 9 chr13 65115675 65115789 -36757380 + L1MEd LINE L1 98 214 -5905 1405 190 158 16 chr13 65116423 65116865 -36756304 - L1ME2 LINE L1 -14 6150 5646 1098 267 147 10 chr13 65116868 65117681 -36755488 - L1ME LINE L1 -4724 1537 568 3020 146 18 6 chr13 65117706 65118221 -36754948 - L1MC1 LINE L1 -6 6327 5807 302 167 0 0 chr13 65118261 65118315 -36754854 - L1ME LINE L1 -5928 142 89 264 320 141 16 chr13 65118865 65118993 -36754176 - MLT1J LTR MaLR -92 419 276 6491 157 207 35 chr13 65118993 65120465 -36752704 + MER52A LTR ERV1 1 1726 -29 617 307 17 45 chr13 65120475 65120762 -36752407 - MLT1J LTR MaLR -232 279 1 278 164 0 16 chr13 65120808 65120869 -36752300 + GA-rich Low_complexity Low_complexity 5 64 0 951 333 81 19 chr13 65120882 65121363 -36751806 - MLT1K LTR MaLR -64 524 14 182 330 128 37 chr13 65121778 65121887 -36751282 - MIR3 SINE MIR -75 133 15 546 184 60 42 chr13 65122204 65122326 -36750843 - L1MC4 LINE L1 -7 8035 7908 186 43 0 0 chr13 65122326 65122349 -36750820 + (CA)n Simple_repeat Simple_repeat 1 23 0 546 184 60 42 chr13 65122349 65122394 -36750775 - L1MC4 LINE L1 -134 7908 7865 * 4071 200 31 34 chr13 65122367 65123338 -36749831 + L1MA9 LINE L1 5307 6274 -38 746 187 27 0 chr13 65123354 65123504 -36749665 - L1MC4 LINE L1 -161 7881 7728 1813 104 4 4 chr13 65123580 65123829 -36749340 - AluSc SINE Alu -18 291 43 1149 153 0 23 chr13 65123867 65124044 -36749125 - AluJo SINE Alu -135 177 5 1820 213 11 3 chr13 65124052 65124427 -36748742 - L1MC4 LINE L1 -473 7569 7192 1503 121 38 8 chr13 65124444 65124708 -36748461 - L1MA4A LINE L1 -4 6299 6028 402 240 22 13 chr13 65124888 65125047 -36748122 + L1MB8 LINE L1 6018 6177 -1 345 189 14 14 chr13 65125156 65125230 -36747939 - Charlie4 DNA MER1_type 0 1961 1888 783 236 60 16 chr13 65125485 65125735 -36747434 + MIR SINE MIR 1 261 -1 1743 174 40 56 chr13 65125835 65126231 -36746938 + MLT1B LTR MaLR 1 390 0 2138 104 10 3 chr13 65126409 65126697 -36746472 + AluSp SINE Alu 1 290 -23 186 43 0 0 chr13 65126700 65126723 -36746446 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 594 178 2 64 chr13 65126789 65126946 -36746223 - MER3 DNA MER1_type -90 119 1 485 206 11 0 chr13 65127067 65127159 -36746010 + FLAM_A SINE Alu 1 93 -49 191 143 0 24 chr13 65127162 65127204 -36745965 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 29 47 0 0 chr13 65127421 65127464 -36745705 + AT_rich Low_complexity Low_complexity 1 43 0 992 100 0 0 chr13 65127466 65127596 -36745573 + AluSg/x SINE Alu 163 292 -18 837 180 0 44 chr13 65127608 65127791 -36745378 - L1MC5 LINE L1 -65 7896 7722 1741 176 48 28 chr13 65127791 65128097 -36745072 + MLT1A1 LTR MaLR 1 316 -49 1884 114 86 16 chr13 65128097 65128412 -36744757 + MER1B DNA MER1_type 1 337 0 1741 176 48 28 chr13 65128412 65128463 -36744706 + MLT1A1 LTR MaLR 316 365 0 271 143 27 98 chr13 65128463 65128575 -36744594 - L1MC5 LINE L1 -235 7726 7623 461 298 74 16 chr13 65129473 65129669 -36743500 - MIR SINE MIR -12 250 45 1970 188 11 47 chr13 65129697 65130215 -36742954 + L1MB3 LINE L1 5715 6179 -4 2605 240 63 41 chr13 65131125 65131533 -36741636 + L1ME3A LINE L1 5284 5681 -489 2529 176 24 15 chr13 65131533 65131994 -36741175 + MLT1C LTR MaLR 3 467 0 2605 240 63 41 chr13 65131994 65132449 -36740720 + L1ME3A LINE L1 5681 6165 -5 420 239 117 61 chr13 65132473 65132670 -36740499 + MIR SINE MIR 55 262 0 22 35 0 0 chr13 65132919 65132948 -36740221 + AT_rich Low_complexity Low_complexity 1 29 0 386 306 28 21 chr13 65133012 65133156 -36740013 - MIR SINE MIR -59 203 59 1137 187 0 39 chr13 65133209 65133439 -36739730 - AluJo SINE Alu -11 301 81 852 172 0 0 chr13 65133440 65133568 -36739601 - FRAM SINE Alu -36 140 13 1074 167 56 0 chr13 65133620 65133818 -36739351 + MER3 DNA MER1_type 1 209 0 325 228 22 4 chr13 65134344 65134437 -36738732 + MIR3 SINE MIR 73 170 -38 240 111 0 0 chr13 65134606 65134642 -36738527 + (TG)n Simple_repeat Simple_repeat 1 36 0 2319 59 0 0 chr13 65134660 65134950 -36738219 - L1PA6 LINE L1 -5 6149 5860 3449 78 60 2 chr13 65135050 65135535 -36737634 + L1P LINE L1 4503 5015 -1131 21 0 0 0 chr13 65135691 65135712 -36737457 + AT_rich Low_complexity Low_complexity 1 21 0 338 42 21 0 chr13 65136146 65136194 -36736975 + (CA)n Simple_repeat Simple_repeat 2 50 0 1397 236 45 26 chr13 65136741 65137122 -36736047 + MLT2C1 LTR ERVL 8 395 -2 624 321 108 9 chr13 65138149 65138547 -36734622 - LTR16A LTR ERVL 0 491 8 417 278 41 47 chr13 65139139 65139308 -36733861 + MIR SINE MIR 71 238 -24 988 168 0 0 chr13 65140549 65140716 -36732453 + FAM SINE Alu 1 48 -1 1209 164 5 0 chr13 65140722 65140929 -36732240 + L1MC1 LINE L1 6016 6223 -110 204 67 0 0 chr13 65142078 65142108 -36731061 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2039 113 18 0 chr13 65142111 65142394 -36730775 - AluSx SINE Alu -24 288 1 361 247 31 0 chr13 65142553 65142650 -36730519 - MER103 DNA DNA -50 116 17 275 335 160 21 chr13 65142844 65143038 -36730131 + MIR SINE MIR 16 236 -26 546 319 65 22 chr13 65143043 65143275 -36729894 - LTR40a LTR ERVL -29 490 249 301 167 67 0 chr13 65144019 65144034 -36729135 - MER46A DNA MER2_type -74 162 144 875 122 99 6 chr13 65144034 65144301 -36728868 + MER46B DNA MER2_type 2 236 0 301 270 26 52 chr13 65144609 65144724 -36728445 - L1ME2 LINE L1 -10 6154 6043 350 131 33 0 chr13 65144740 65144801 -36728368 + MER58A DNA MER1_type 37 99 -8 268 242 45 0 chr13 65144817 65144883 -36728286 + Tigger3(Golem) DNA MER2_type 1 69 -2960 * 1032 105 52 23 chr13 65144879 65145051 -36728118 + Tigger3(Golem) DNA MER2_type 2788 2964 -65 782 229 34 0 chr13 65145024 65145199 -36727970 - MLT1A2 LTR MaLR -193 181 1 * 2018 145 108 106 chr13 65145228 65145822 -36727347 - L1ME2 LINE L1 -111 6053 5459 280 277 208 0 chr13 65146784 65146914 -36726255 - L2 LINE L2 -49 3264 3108 515 307 101 11 chr13 65146966 65147145 -36726024 - MIR SINE MIR -21 241 47 700 263 200 21 chr13 65147145 65147645 -36725524 - MLT1H1 LTR MaLR 0 555 1 307 208 0 0 chr13 65147969 65148022 -36725147 - MER45C DNA AcHobo -1 952 900 * 509 332 144 5 chr13 65148018 65148220 -36724949 - MER45C DNA AcHobo -320 633 404 1026 243 9 14 chr13 65148288 65148502 -36724667 - MER45C DNA AcHobo -740 213 1 921 223 58 0 chr13 65148555 65148761 -36724408 - MER58A DNA MER1_type -4 220 3 572 302 60 42 chr13 65149042 65149327 -36723842 + L2 LINE L2 3024 3313 0 209 393 0 0 chr13 65149666 65149727 -36723442 - MER91B DNA MER1_type -129 61 1 1382 184 76 11 chr13 65150642 65150919 -36722250 - AluJb SINE Alu -17 295 1 277 380 62 62 chr13 65151063 65151437 -36721732 + L2 LINE L2 2899 3272 0 241 315 157 0 chr13 65151769 65151858 -36721311 - MIR3 SINE MIR -24 184 82 22 0 0 0 chr13 65152316 65152338 -36720831 + AT_rich Low_complexity Low_complexity 1 22 0 384 303 80 31 chr13 65152373 65152535 -36720634 + MIR SINE MIR 21 190 -72 958 258 152 44 chr13 65152552 65153025 -36720144 - HAL1 LINE L1 -335 2172 1649 353 244 76 32 chr13 65153046 65153296 -36719873 - L1MEc LINE L1 -2812 3403 3143 1282 271 151 32 chr13 65153337 65153700 -36719469 - L1MEc LINE L1 -3372 2843 2524 532 55 0 121 chr13 65153700 65153791 -36719378 + MADE1 DNA Mariner 1 80 0 1282 271 151 32 chr13 65153791 65154896 -36718273 - L1MEc LINE L1 -3691 2524 1247 330 222 67 44 chr13 65155026 65155116 -36718053 - L2 LINE L2 -681 2633 2542 6031 211 75 23 chr13 65155508 65155560 -36717609 + L1MC1 LINE L1 3502 3550 -2783 1681 204 70 8 chr13 65155560 65155933 -36717236 - MSTD LTR MaLR 0 396 1 6031 211 75 23 chr13 65155933 65158195 -36714974 + L1MC1 LINE L1 3550 5922 -411 339 191 24 0 chr13 65158367 65158451 -36714718 + L1MC1 LINE L1 6191 6276 -57 307 261 14 0 chr13 65159042 65159111 -36714058 + L2 LINE L2 3203 3272 0 255 374 47 0 chr13 65159147 65159254 -36713915 - MIR SINE MIR -78 130 19 254 340 142 55 chr13 65159487 65160220 -36712949 - L2 LINE L2 -1172 2142 1346 195 409 94 0 chr13 65160967 65161138 -36712031 - L2 LINE L2 -2879 435 249 1446 221 99 52 chr13 65161226 65161711 -36711458 - L1MC4 LINE L1 -2 8040 7533 1485 201 57 3 chr13 65161718 65162052 -36711117 - L1MC4 LINE L1 -791 7251 6900 1653 178 17 10 chr13 65162363 65162656 -36710513 + AluJo SINE Alu 2 296 -16 631 260 49 16 chr13 65163359 65163605 -36709564 - L1ME4a LINE L1 -246 5875 5622 1066 335 136 44 chr13 65163639 65164256 -36708913 - HAL1b LINE L1 -13 1335 641 2823 0 0 3 chr13 65164256 65164562 -36708607 - AluYa5 SINE Alu -6 305 1 1066 335 136 44 chr13 65164562 65164666 -36708503 - HAL1b LINE L1 -707 641 548 25 0 0 0 chr13 65164696 65164721 -36708448 + AT_rich Low_complexity Low_complexity 1 25 0 475 287 59 35 chr13 65165150 65165291 -36707878 - L1ME LINE L1 -422 5740 5591 3691 83 55 8 chr13 65165291 65165820 -36707349 - MER41A LTR ERV1 0 554 1 475 287 59 35 chr13 65165820 65165880 -36707289 - L1ME LINE L1 -571 5591 5534 3147 128 50 60 chr13 65166051 65166616 -36706553 - MER4B LTR ERV1 0 610 50 2760 78 47 62 chr13 65166616 65167067 -36706102 - MLT2A1 LTR ERVL 0 444 1 3147 128 50 60 chr13 65167067 65167117 -36706052 - MER4B LTR ERV1 -560 50 1 3118 116 53 38 chr13 65167405 65167697 -36705472 - LTR49 LTR ERV1 0 595 309 2238 101 0 26 chr13 65167697 65168005 -36705164 + AluSx SINE Alu 1 300 -12 3118 116 53 38 chr13 65168005 65168296 -36704873 - LTR49 LTR ERV1 -286 309 3 255 330 102 58 chr13 65168682 65168888 -36704281 - L2 LINE L2 -30 3242 3028 2749 145 63 28 chr13 65169362 65169866 -36703303 - LTR45 LTR ERV1 0 525 4 383 20 20 0 chr13 65171142 65171192 -36701977 - MADE1 DNA Mariner 0 80 30 293 370 87 23 chr13 65171375 65171640 -36701529 - L2 LINE L2 -69 3244 2963 1749 151 80 6 chr13 65171954 65172278 -36700891 - MER7A DNA MER2_type 0 346 1 232 313 47 0 chr13 65172941 65173005 -36700164 - L3 LINE CR1 -7 1570 1504 287 337 128 27 chr13 65173131 65173233 -36699936 - L3 LINE CR1 -79 1498 1408 216 0 0 0 chr13 65173233 65173257 -36699912 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1395 146 146 4 chr13 65173260 65173507 -36699662 - AluJb SINE Alu -30 282 1 287 337 128 27 chr13 65173507 65173587 -36699582 - L3 LINE CR1 -170 1407 1293 1717 192 10 3 chr13 65175785 65176093 -36697076 - AluJb SINE Alu 0 312 3 24 32 0 0 chr13 65176231 65176262 -36696907 + AT_rich Low_complexity Low_complexity 1 31 0 326 250 39 100 chr13 65176486 65176666 -36696503 + MIR SINE MIR 32 200 -62 2143 113 0 35 chr13 65176771 65177089 -36696080 - AluSx SINE Alu -5 307 1 315 211 154 48 chr13 65177325 65177429 -36695740 + L2 LINE L2 2351 2465 -849 21 0 0 0 chr13 65177738 65177759 -36695410 + AT_rich Low_complexity Low_complexity 1 21 0 289 224 19 47 chr13 65178064 65178171 -36694998 + L1MC4 LINE L1 6600 6703 -1339 2398 76 0 19 chr13 65178800 65179116 -36694053 - AluY SINE Alu -1 310 1 22 35 0 0 chr13 65179329 65179358 -36693811 + AT_rich Low_complexity Low_complexity 1 29 0 1105 274 50 27 chr13 65179451 65179932 -36693237 - MLT1G3 LTR MaLR -12 583 5 337 231 137 43 chr13 65179949 65180066 -36693103 + L2 LINE L2 2338 2465 -849 14842 143 31 16 chr13 65180094 65180199 -36692970 - Tigger7 DNA MER2_type -8 2479 2377 2281 110 3 0 chr13 65180199 65180508 -36692661 - AluSq SINE Alu -3 310 1 14842 143 31 16 chr13 65180508 65182843 -36690326 - Tigger7 DNA MER2_type -110 2377 1 653 266 195 60 chr13 65183060 65183572 -36689597 - L2 LINE L2 -703 2611 2031 198 367 46 9 chr13 65183630 65183739 -36689430 - L2 LINE L2 -1224 2090 1978 540 286 51 51 chr13 65183751 65183985 -36689184 - MIR SINE MIR -1 261 28 370 359 0 8 chr13 65184015 65184143 -36689026 - L2 LINE L2 -1391 1923 1797 229 314 72 31 chr13 65184148 65184342 -36688827 + L1ME LINE L1 5717 5918 -203 6268 133 85 7 chr13 65184459 65184976 -36688193 + Tigger3b DNA MER2_type 3 478 -2550 1631 161 30 26 chr13 65184976 65185281 -36687888 + AluJb SINE Alu 7 312 0 6268 133 85 7 chr13 65185281 65185903 -36687266 + Tigger3b DNA MER2_type 478 1231 0 255 365 47 0 chr13 65186099 65186206 -36686963 - MIR SINE MIR -67 141 30 2092 127 43 0 chr13 65186818 65187142 -36686027 - Tigger1 DNA MER2_type -3 2415 2078 1113 176 70 41 chr13 65187161 65187405 -36685764 - AluJo SINE Alu -61 251 1 10546 117 27 1 chr13 65187408 65189004 -36684165 - Tigger1 DNA MER2_type -325 2093 456 1620 193 25 19 chr13 65189003 65189319 -36683850 - Tigger1 DNA MER2_type -2099 319 2 * 259 258 45 45 chr13 65189760 65189849 -36683320 + MIR SINE MIR 35 123 -139 1018 170 31 15 chr13 65190555 65190897 -36682272 + Tigger2 DNA MER2_type 11 2714 -4 421 309 126 5 chr13 65191019 65191210 -36681959 + L2 LINE L2 833 1046 -2268 207 0 0 0 chr13 65191339 65191362 -36681807 + (T)n Simple_repeat Simple_repeat 1 23 0 921 139 64 0 chr13 65192730 65192902 -36680267 + L1MA8 LINE L1 6109 6291 0 1549 160 7 87 chr13 65193738 65194038 -36679131 + AluJo SINE Alu 9 284 -28 1998 139 3 14 chr13 65194104 65194399 -36678770 - AluSx SINE Alu -20 292 1 28 29 0 0 chr13 65194493 65194528 -36678641 + AT_rich Low_complexity Low_complexity 1 35 0 2337 133 48 38 chr13 65194832 65195253 -36677916 - MSTA LTR MaLR -1 427 3 2653 158 17 19 chr13 65195255 65195586 -36677583 - MSTA-int LTR MaLR 0 1651 1320 1975 127 18 0 chr13 65195586 65195870 -36677299 - AluSx SINE Alu -23 289 1 2653 158 17 19 chr13 65195870 65196018 -36677151 - MSTA-int LTR MaLR -331 1320 1173 378 263 0 0 chr13 65196018 65196098 -36677071 - LTR40a LTR ERVL -439 80 1 698 239 60 74 chr13 65196099 65196436 -36676733 - L1MC/D LINE L1 -673 5639 5444 38 68 0 0 chr13 65198372 65198445 -36674724 + AT_rich Low_complexity Low_complexity 1 73 0 1048 117 17 100 chr13 65199361 65199591 -36673578 - L1MC/D LINE L1 -2398 5597 5387 2268 109 0 0 chr13 65199862 65200165 -36673004 - AluSx SINE Alu -9 303 1 312 273 107 20 chr13 65200936 65201086 -36672083 + MIR SINE MIR 100 262 0 919 194 16 16 chr13 65202137 65202328 -36670841 - MER105 DNA DNA -10 194 4 372 279 111 41 chr13 65202559 65202731 -36670438 - MIR SINE MIR 0 262 79 1877 116 35 3 chr13 65202732 65203016 -36670153 - AluSx SINE Alu -19 293 1 32 57 0 0 chr13 65204027 65204080 -36669089 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr13 65207265 65207288 -36665881 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr13 65207408 65207443 -36665726 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr13 65208295 65208336 -36664833 + AT_rich Low_complexity Low_complexity 1 41 0 242 211 0 0 chr13 65210162 65210219 -36662950 - L1MC4 LINE L1 -1337 6705 6649 21 36 0 0 chr13 65210290 65210318 -36662851 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 65211125 65211155 -36662014 + AT_rich Low_complexity Low_complexity 1 30 0 465 248 72 8 chr13 65212295 65212420 -36660749 - MER94 DNA DNA 0 134 2 22 0 0 0 chr13 65214315 65214337 -36658832 + GC_rich Low_complexity Low_complexity 1 22 0 183 354 93 31 chr13 65214447 65214608 -36658561 - L2 LINE L2 -109 3163 2993 2226 109 0 0 chr13 65215525 65215850 -36657319 + AluSx SINE Alu 1 325 0 2322 199 10 77 chr13 65215955 65216549 -36656620 - MLT2B3 LTR ERVL 0 554 1 270 82 82 16 chr13 65217157 65217218 -36655951 + CT-rich Low_complexity Low_complexity 4 68 0 21943 167 30 25 chr13 65217389 65223655 -36649514 + L1PA12 LINE L1 1 7606 0 560 216 30 78 chr13 65223935 65224102 -36649067 + FRAM SINE Alu 1 159 -7 23 0 0 0 chr13 65224254 65224277 -36648892 + AT_rich Low_complexity Low_complexity 1 23 0 2324 251 161 38 chr13 65226330 65227130 -36646039 + L1MDa LINE L1 16 1086 -5454 1484 165 110 0 chr13 65227229 65227483 -36645686 - AluJo SINE Alu -30 282 1 207 0 0 0 chr13 65228502 65228525 -36644644 + (CA)n Simple_repeat Simple_repeat 2 24 0 27 49 0 0 chr13 65228542 65228583 -36644586 + AT_rich Low_complexity Low_complexity 1 41 0 7401 33 5 1 chr13 65230647 65231827 -36641342 + L1PA4 LINE L1 4971 6153 -2 24767 129 14 23 chr13 65232890 65237185 -36635984 - L1PA8A LINE L1 -13 6433 2155 2504 70 0 0 chr13 65237185 65237483 -36635686 + AluY SINE Alu 1 298 -13 24767 129 14 23 chr13 65237483 65239607 -36633562 - L1PA8A LINE L1 -4291 2155 14 23 68 0 0 chr13 65239727 65239771 -36633398 + AT_rich Low_complexity Low_complexity 1 44 0 241 232 0 18 chr13 65240122 65240178 -36632991 + MLT1K LTR MaLR 188 242 -346 33 25 0 0 chr13 65241071 65241111 -36632058 + AT_rich Low_complexity Low_complexity 1 40 0 2537 217 84 59 chr13 65241148 65242033 -36631136 + L1MCb LINE L1 1 907 -5138 415 212 18 70 chr13 65242064 65242363 -36630806 - MLT1G1 LTR MaLR -307 283 3 2364 115 0 0 chr13 65242449 65242761 -36630408 + AluSx SINE Alu 1 312 0 391 267 57 9 chr13 65242865 65242970 -36630199 - L2 LINE L2 -1 3312 3203 363 354 36 10 chr13 65243191 65243383 -36629786 - L3b LINE CR1 -235 1348 1152 1339 207 84 11 chr13 65243624 65243899 -36629270 - AluJo SINE Alu -17 295 1 508 289 7 22 chr13 65244112 65244247 -36628922 - L2 LINE L2 -1 3271 3139 1303 181 15 27 chr13 65244365 65244697 -36628472 - L1MC3 LINE L1 -12 7773 7446 1368 71 40 20 chr13 65244698 65244896 -36628273 - L1PA5 LINE L1 0 6154 5953 7418 55 4 0 chr13 65244896 65245882 -36627287 - L1PA5 LINE L1 -1080 5066 4077 2116 165 35 0 chr13 65245880 65246275 -36626894 - L1MC3 LINE L1 -329 7456 7048 * 240 276 81 11 chr13 65246277 65246364 -36626805 + MIR SINE MIR 43 135 -73 23 0 0 0 chr13 65247629 65247652 -36625517 + AT_rich Low_complexity Low_complexity 1 23 0 2253 119 0 0 chr13 65247946 65248249 -36624920 + AluSg SINE Alu 1 303 -7 2090 135 33 33 chr13 65248858 65249220 -36623949 + THE1B LTR MaLR 1 362 -2 2293 103 0 7 chr13 65249277 65249577 -36623592 + AluSx SINE Alu 1 298 -14 1436 143 5 140 chr13 65250098 65250497 -36622672 + MLT1A1 LTR MaLR 21 365 0 261 263 13 13 chr13 65250868 65250944 -36622225 + MIR3 SINE MIR 121 196 -12 1503 186 39 75 chr13 65251115 65251557 -36621612 - MLT1C LTR MaLR 0 467 42 371 287 46 28 chr13 65251606 65251714 -36621455 + L2 LINE L2 3154 3263 -9 243 169 0 51 chr13 65251909 65251968 -36621201 + CT-rich Low_complexity Low_complexity 4 59 0 269 239 28 0 chr13 65252060 65252131 -36621038 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 180 111 0 0 chr13 65252165 65252192 -36620977 + (TA)n Simple_repeat Simple_repeat 1 27 0 529 282 21 48 chr13 65253908 65254096 -36619073 - MER5A DNA MER1_type -6 183 1 509 281 37 18 chr13 65255118 65255282 -36617887 - L2 LINE L2 -471 2843 2677 437 311 104 45 chr13 65255347 65255736 -36617433 + L2 LINE L2 2632 3038 -234 310 292 97 0 chr13 65255797 65255910 -36617259 + L2 LINE L2 3147 3270 -2 21 57 0 0 chr13 65256190 65256225 -36616944 + AT_rich Low_complexity Low_complexity 1 35 0 195 235 210 0 chr13 65256225 65256306 -36616863 - MIR SINE MIR -52 210 113 4157 118 175 77 chr13 65256313 65257712 -36615457 - pTR5 LTR ERV1 0 2438 743 233 197 66 40 chr13 65257733 65257809 -36615360 - MIR3 SINE MIR -124 84 7 867 188 18 24 chr13 65258335 65258505 -36614664 + MER5B DNA MER1_type 1 169 -9 231 292 11 45 chr13 65258746 65258835 -36614334 - MIR SINE MIR -112 150 65 625 182 35 7 chr13 65258837 65258980 -36614189 + MLT1A1 LTR MaLR 1 147 -218 949 119 7 200 chr13 65259077 65259372 -36613797 - LTR32 LTR ERVL 0 471 234 562 80 0 0 chr13 65259392 65259467 -36613702 - LTR32 LTR ERVL -383 88 14 634 203 6 25 chr13 65259467 65259625 -36613544 + MLT1A1 LTR MaLR 199 353 -12 248 104 0 0 chr13 65259648 65259694 -36613475 - Alu SINE Alu -4 297 258 324 221 105 0 chr13 65260263 65260358 -36612811 - L1MC/D LINE L1 -2101 5707 5603 4715 122 18 16 chr13 65260376 65261144 -36612025 - L1PA16 LINE L1 -9 6157 5388 22 0 0 0 chr13 65261251 65261273 -36611896 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr13 65262265 65262302 -36610867 + AT_rich Low_complexity Low_complexity 1 37 0 182 100 75 0 chr13 65262605 65262645 -36610524 + T-rich Low_complexity Low_complexity 2 44 0 500 275 98 40 chr13 65262707 65262983 -36610186 - L2 LINE L2 -193 3120 2829 532 220 28 23 chr13 65262998 65263165 -36610004 + MLT1E LTR MaLR 19 184 -358 1513 129 49 139 chr13 65263168 65263578 -36609591 - THE1C LTR MaLR 0 375 3 3975 99 38 0 chr13 65263580 65264165 -36609004 - THE1C-int LTR MaLR 0 1580 974 13855 206 22 9 chr13 65264180 65264563 -36608606 - L1PB1 LINE L1 0 6867 6490 675 94 0 0 chr13 65264563 65264659 -36608510 + (TA)n Simple_repeat Simple_repeat 2 97 0 13855 206 22 9 chr13 65264659 65268803 -36604366 - L1PB1 LINE L1 -377 6490 2210 1992 238 28 0 chr13 65268807 65269308 -36603861 - L1PB1 LINE L1 -6343 520 6 610 223 0 0 chr13 65269328 65269449 -36603720 - MLT1A2 LTR MaLR -76 298 178 5812 112 11 74 chr13 65269449 65270499 -36602670 - THE1B-int LTR MaLR -596 984 1 2154 157 22 3 chr13 65270499 65270856 -36602313 - THE1B LTR MaLR 0 364 1 1089 256 49 41 chr13 65270866 65271253 -36601916 + MLT1E LTR MaLR 204 593 0 413 284 362 5 chr13 65271253 65271651 -36601518 - L2 LINE L2 -481 2833 2294 25 0 0 0 chr13 65273270 65273295 -36599874 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr13 65274043 65274080 -36599089 + AT_rich Low_complexity Low_complexity 1 37 0 222 339 0 0 chr13 65274165 65274230 -36598939 + L2 LINE L2 3208 3272 0 564 269 88 114 chr13 65274331 65274821 -36598348 - MLT1K LTR MaLR -98 490 14 321 26 0 0 chr13 65275063 65275101 -36598068 + (TG)n Simple_repeat Simple_repeat 2 39 0 1800 161 23 13 chr13 65275262 65275566 -36597603 + AluJo SINE Alu 1 307 -5 275 154 0 39 chr13 65275635 65275687 -36597482 - L2 LINE L2 0 3272 3223 189 241 19 0 chr13 65275741 65275795 -36597374 - L2 LINE L2 -583 2731 2677 1958 299 40 47 chr13 65275860 65276616 -36596553 - HERV16 LTR ERVL -3814 1182 433 2364 117 80 15 chr13 65276616 65277017 -36596152 + MSTA LTR MaLR 1 427 -1 1958 299 40 47 chr13 65277017 65277167 -36596002 - HERV16 LTR ERVL -4563 433 283 330 246 123 15 chr13 65277389 65277519 -36595650 - LTR16A LTR ERVL -31 419 276 2338 127 16 11 chr13 65278421 65278792 -36594377 - MER93b LTR ERV1 0 373 1 256 243 27 27 chr13 65278793 65278867 -36594302 - MIR SINE MIR -110 152 79 345 313 79 28 chr13 65279220 65279434 -36593735 + L3b LINE CR1 1104 1328 -255 4447 168 32 1 chr13 65280216 65280976 -36592193 + LTR39 LTR ERV1 1 783 0 414 222 144 36 chr13 65280976 65281170 -36591999 - MER5C DNA MER1_type -18 306 92 273 357 32 0 chr13 65281190 65281316 -36591853 + MIR SINE MIR 41 170 -92 352 345 36 15 chr13 65282716 65282935 -36590234 + MIR SINE MIR 35 256 -6 542 194 6 106 chr13 65283417 65283587 -36589582 - MER6B DNA MER2_type -1 209 57 28 0 0 0 chr13 65283993 65284021 -36589148 + AT_rich Low_complexity Low_complexity 1 28 0 2822 136 15 8 chr13 65284169 65284641 -36588528 + L1MB2 LINE L1 5697 6171 0 1651 178 7 20 chr13 65284680 65284978 -36588191 + AluJo SINE Alu 1 294 -18 * 2121 83 11 0 chr13 65284977 65285070 -36588099 + AluY SINE Alu 33 123 -188 347 0 0 23 chr13 65285070 65285114 -36588055 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2121 83 11 0 chr13 65285114 65285296 -36587873 + AluY SINE Alu 123 311 0 474 296 122 0 chr13 65287431 65287620 -36585549 + MIR SINE MIR 48 259 -3 373 299 201 5 chr13 65288053 65288247 -36584922 - MIR SINE MIR -3 259 28 211 298 0 0 chr13 65288610 65288667 -36584502 + GA-rich Low_complexity Low_complexity 2 58 0 648 286 87 38 chr13 65288725 65288818 -36584351 + HAL1b LINE L1 323 410 -938 2089 125 3 0 chr13 65288818 65289115 -36584054 - AluSq SINE Alu -15 298 1 648 286 87 38 chr13 65289115 65289518 -36583651 + HAL1b LINE L1 410 843 -505 418 285 25 51 chr13 65289564 65289940 -36583229 + L1MC4a LINE L1 4867 5225 -921 6740 232 69 52 chr13 65289958 65292387 -36580782 + L1MC4a LINE L1 5270 7738 -70 1069 287 41 58 chr13 65292385 65292884 -36580285 + L1ME3A LINE L1 4983 5450 -720 * 2144 90 7 27 chr13 65292884 65293184 -36579985 + AluSg SINE Alu 1 294 -16 1069 287 41 58 chr13 65293184 65293669 -36579500 + L1ME3A LINE L1 5450 5941 -229 24 67 0 0 chr13 65293836 65293881 -36579288 + AT_rich Low_complexity Low_complexity 1 45 0 250 274 200 23 chr13 65295906 65296019 -36577150 - MARNA DNA Mariner -349 237 145 525 114 13 0 chr13 65296019 65296098 -36577071 + MADE1 DNA Mariner 1 80 0 250 274 200 23 chr13 65296098 65296159 -36577010 - MARNA DNA Mariner -441 145 32 6355 60 57 0 chr13 65296230 65297616 -36575553 - L1PA7 LINE L1 0 6154 4702 256 234 31 0 chr13 65297630 65297694 -36575475 - L1ME LINE L1 -603 5559 5494 2286 98 7 0 chr13 65297707 65298004 -36575165 - AluSx SINE Alu -12 300 2 972 205 13 46 chr13 65298051 65298290 -36574879 - MLT1B LTR MaLR -159 231 1 430 280 73 55 chr13 65298448 65298666 -36574503 + L1ME LINE L1 5541 5762 -359 304 364 25 0 chr13 65298779 65298900 -36574269 + MIR SINE MIR 63 186 -76 326 156 16 0 chr13 65299178 65299242 -36573927 + (TA)n Simple_repeat Simple_repeat 2 66 0 2493 188 50 13 chr13 65299868 65300405 -36572764 + MER89 LTR ERV1 1 557 -2 261 83 0 0 chr13 65301016 65301052 -36572117 + (TG)n Simple_repeat Simple_repeat 2 37 0 1594 171 39 7 chr13 65301059 65301340 -36571829 - AluJo SINE Alu -22 290 1 622 292 68 75 chr13 65301409 65301864 -36571305 - HsTC2 DNA Tc2 -1446 452 1 395 300 143 22 chr13 65301890 65302163 -36571006 + L2 LINE L2 2396 2701 -613 1569 109 0 0 chr13 65302171 65302382 -36570787 - AluSg/x SINE Alu -4 306 96 486 129 0 0 chr13 65302382 65302447 -36570722 + AluSg SINE Alu 22 86 -224 290 318 159 21 chr13 65302447 65302871 -36570298 + L2 LINE L2 2690 3171 -142 189 0 0 0 chr13 65303044 65303065 -36570104 + (GA)n Simple_repeat Simple_repeat 1 21 0 457 299 66 20 chr13 65303079 65303276 -36569893 + MIR SINE MIR 1 206 -56 446 295 121 14 chr13 65304002 65304209 -36568960 + MLT1J2 LTR MaLR 189 417 -33 269 315 87 31 chr13 65305955 65306082 -36567087 + MIR SINE MIR 11 144 -118 2253 112 26 34 chr13 65306784 65307168 -36566001 - L1PB3 LINE L1 0 6154 5774 270 275 0 12 chr13 65307293 65307373 -36565796 - L1MC5 LINE L1 -77 7884 7806 3206 159 134 5 chr13 65307418 65308083 -36565086 - L1MC3 LINE L1 -11 7774 7024 558 62 0 0 chr13 65308085 65308166 -36565003 - L1MA4A LINE L1 -4 6299 6219 596 186 53 71 chr13 65308170 65308509 -36564660 - L1MC5 LINE L1 -182 7779 7447 193 420 12 0 chr13 65308616 65308697 -36564472 - L2 LINE L2 -3 3269 3188 186 280 280 9 chr13 65308813 65308920 -36564249 - MIR SINE MIR -98 164 29 707 268 66 5 chr13 65308924 65309122 -36564047 - MER58C DNA MER1_type 0 215 6 2103 115 17 0 chr13 65309628 65309916 -36563253 - AluSx SINE Alu -19 293 1 561 312 93 10 chr13 65310133 65310338 -36562831 - MIR SINE MIR -11 251 30 254 305 168 0 chr13 65310385 65310480 -36562689 - L2 LINE L2 0 3272 3162 558 250 171 1 chr13 65311152 65311356 -36561813 + MIR SINE MIR 23 262 0 558 200 0 0 chr13 65311675 65311775 -36561394 - MER5A DNA MER1_type -80 109 10 790 199 26 45 chr13 65313913 65314069 -36559100 - AluJ SINE Alu -29 283 131 832 144 0 43 chr13 65314095 65314117 -36559052 - AluJ SINE Alu -179 133 112 2563 155 24 0 chr13 65314117 65314531 -36558638 + MSTB LTR MaLR 1 424 -2 832 144 0 43 chr13 65314531 65314647 -36558522 - AluJ SINE Alu -200 112 1 21 0 0 0 chr13 65314647 65314668 -36558501 + AT_rich Low_complexity Low_complexity 1 21 0 374 266 0 0 chr13 65314760 65314839 -36558330 - MER5A DNA MER1_type -102 87 9 32 0 0 0 chr13 65315050 65315082 -36558087 + AT_rich Low_complexity Low_complexity 1 32 0 310 210 32 0 chr13 65317023 65317085 -36556084 - L2 LINE L2 -5 3267 3204 945 182 42 0 chr13 65317484 65317676 -36555493 + L1MB7 LINE L1 5955 6154 -30 552 30 0 0 chr13 65318105 65318172 -36554997 - AluY SINE Alu -179 132 66 1366 115 5 10 chr13 65318173 65318373 -36554796 - AluSx SINE Alu -113 199 1 300 342 183 10 chr13 65318640 65318842 -36554327 - MIR SINE MIR -6 256 20 1290 201 37 48 chr13 65319155 65319449 -36553720 + AluJo SINE Alu 1 291 -21 2294 106 45 0 chr13 65321049 65321379 -36551790 + L1PA11 LINE L1 5809 6153 -21 1366 197 0 76 chr13 65322585 65322900 -36550269 - AluJo SINE Alu -21 291 1 1232 254 42 11 chr13 65322911 65323289 -36549880 - L1MB7 LINE L1 -1 6183 5794 285 308 157 12 chr13 65324386 65324558 -36548611 - L2 LINE L2 0 3313 3117 250 296 0 0 chr13 65324669 65324723 -36548446 - MIR SINE MIR -57 151 98 249 361 90 42 chr13 65326303 65326848 -36546321 + L2 LINE L2 2136 2706 -608 1281 180 3 98 chr13 65326862 65327190 -36545979 + AluJo SINE Alu 15 311 -1 383 191 252 17 chr13 65327647 65327762 -36545407 + L2 LINE L2 3172 3313 0 2021 120 38 3 chr13 65328122 65328413 -36544756 + AluSx SINE Alu 1 301 -11 439 254 164 18 chr13 65331075 65331240 -36541929 - L2 LINE L2 -17 3296 3108 365 268 7 52 chr13 65331465 65331618 -36541551 - Charlie4 DNA MER1_type -1 1960 1815 2272 250 51 49 chr13 65332850 65333693 -36539476 - L1MEc LINE L1 -5516 880 36 10454 200 22 7 chr13 65387593 65387745 -36485424 - L1P LINE L1 -1201 4945 4797 189 0 0 0 chr13 65387745 65387766 -36485403 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 10454 200 22 7 chr13 65387766 65390101 -36483068 - L1P LINE L1 -1349 4797 2419 268 174 22 0 chr13 65390505 65390551 -36482618 + MIR3 SINE MIR 146 192 -16 4343 143 78 34 chr13 65390792 65390973 -36482196 + L1MA7 LINE L1 5137 5309 -982 2396 78 3 3 chr13 65390973 65391281 -36481888 + AluSp SINE Alu 1 308 -5 4343 143 78 34 chr13 65391281 65392198 -36480971 + L1MA7 LINE L1 5309 6287 -4 1890 121 82 28 chr13 65392389 65392745 -36480424 - THE1C LTR MaLR 0 375 1 373 289 0 0 chr13 65393281 65393371 -36479798 - MIR SINE MIR 0 262 173 839 336 90 19 chr13 65393559 65393991 -36479178 - L3 LINE CR1 -870 707 245 283 254 178 99 chr13 65394307 65394780 -36478389 - LTR67 LTR ERVL -2 555 46 295 360 60 13 chr13 65394901 65395051 -36478118 - MIR SINE MIR -95 167 11 2359 136 34 3 chr13 65395116 65395498 -36477671 - L1PA15 LINE L1 -4 6161 5768 2664 124 19 7 chr13 65395498 65395908 -36477261 - L1PA15 LINE L1 -4 6161 5738 1186 208 26 62 chr13 65396008 65396397 -36476772 - L1ME1 LINE L1 -128 6038 5664 806 251 72 81 chr13 65396416 65396473 -36476696 - L2 LINE L2 -815 2499 2443 1737 175 35 12 chr13 65396473 65396811 -36476358 - MER7A DNA MER2_type 0 346 3 806 251 72 81 chr13 65396811 65397047 -36476122 - L2 LINE L2 -871 2443 2207 2175 178 100 2 chr13 65397047 65397249 -36475920 + MLT1D LTR MaLR 1 182 -323 195 42 0 0 chr13 65397249 65397273 -36475896 + (GA)n Simple_repeat Simple_repeat 1 24 0 2175 178 100 2 chr13 65397273 65397530 -36475639 + MLT1D LTR MaLR 182 505 0 806 251 72 81 chr13 65397530 65397570 -36475599 - L2 LINE L2 -1107 2207 2168 229 292 42 28 chr13 65398359 65398431 -36474738 - MIR SINE MIR -188 74 2 29 0 0 0 chr13 65401430 65401459 -36471710 + AT_rich Low_complexity Low_complexity 1 29 0 1476 118 26 9 chr13 65402287 65402516 -36470653 + THE1B LTR MaLR 1 233 -131 22 56 0 0 chr13 65402753 65402789 -36470380 + AT_rich Low_complexity Low_complexity 1 36 0 9363 252 75 46 chr13 65403240 65403559 -36469610 - L1P5 LINE L1 -527 7067 6759 2033 122 7 0 chr13 65403559 65403830 -36469339 - AluSg SINE Alu -24 286 14 9363 252 75 46 chr13 65403830 65406919 -36466250 - L1P5 LINE L1 -835 6759 3762 2107 105 42 0 chr13 65406919 65407205 -36465964 - AluSp SINE Alu -10 303 6 9363 252 75 46 chr13 65407205 65410637 -36462532 - L1P5 LINE L1 -3832 3762 7 3180 237 29 40 chr13 65410643 65411876 -36461293 - L1PA15-16 LINE L1 -2877 3972 2750 2212 119 0 0 chr13 65411883 65412177 -36460992 - AluSx SINE Alu -18 294 1 582 231 0 0 chr13 65412430 65412564 -36460605 - L1M2 LINE L1 -4180 2669 2536 379 335 56 15 chr13 65413194 65413391 -36459778 + MIR SINE MIR 41 245 -17 684 202 66 50 chr13 65415130 65415328 -36457841 + MER3 DNA MER1_type 3 203 -6 921 200 75 73 chr13 65416513 65416977 -36456192 + LTR37B LTR ERV1 4 468 0 477 0 0 0 chr13 65418110 65418163 -36455006 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr13 65418810 65418832 -36454337 + AT_rich Low_complexity Low_complexity 1 22 0 225 244 79 63 chr13 65419085 65419212 -36453957 + L1MC5 LINE L1 7719 7847 -114 2380 286 178 22 chr13 65419313 65420667 -36452502 - L2 LINE L2 0 3313 1760 994 279 77 21 chr13 65420693 65421163 -36452006 - LTR33 LTR ERVL -25 496 1 455 261 91 66 chr13 65421291 65421443 -36451726 + L1ME4a LINE L1 5720 5867 -254 843 142 0 8 chr13 65421443 65421577 -36451592 + FLAM_C SINE Alu 1 133 0 455 261 91 66 chr13 65421577 65421742 -36451427 + L1ME4a LINE L1 5867 6045 -76 189 305 92 28 chr13 65422233 65422374 -36450795 - L2 LINE L2 -15 3298 3149 767 205 83 24 chr13 65422911 65423116 -36450053 - MIR SINE MIR -13 249 33 277 335 0 58 chr13 65424566 65424757 -36448412 + CT-rich Low_complexity Low_complexity 1 180 0 2410 140 33 23 chr13 65424988 65425416 -36447753 + MSTB1 LTR MaLR 1 432 0 201 336 74 41 chr13 65425539 65425661 -36447508 - L2 LINE L2 -10 3262 3137 715 250 30 15 chr13 65425695 65425895 -36447274 - MIR SINE MIR -8 254 52 204 319 60 35 chr13 65425986 65426102 -36447067 - MIR3 SINE MIR -1 207 89 249 320 104 0 chr13 65429247 65429372 -36443797 - L2 LINE L2 -18 3254 3117 7927 101 3 0 chr13 65429432 65430555 -36442614 - THE1B-int LTR MaLR -454 1126 1 2113 137 39 20 chr13 65430555 65430912 -36442257 - THE1B LTR MaLR 0 364 1 180 182 0 0 chr13 65431106 65431150 -36442019 + GA-rich Low_complexity Low_complexity 1 44 0 355 194 10 10 chr13 65431488 65431586 -36441583 - Charlie5 DNA MER1_type 0 2624 2527 13137 143 26 40 chr13 65431595 65434091 -36439078 - L1MA3 LINE L1 -6 7718 5190 2427 63 0 10 chr13 65434091 65434392 -36438777 - AluY SINE Alu -13 298 1 13137 143 26 40 chr13 65434392 65437377 -36435792 - L1MA3 LINE L1 -2534 5190 2322 229 86 0 0 chr13 65437397 65437432 -36435737 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2196 109 3 0 chr13 65437432 65437716 -36435453 - AluSq SINE Alu -1 319 1 890 215 12 43 chr13 65437716 65437959 -36435210 - MER33 DNA MER1_type -251 73 1 23 33 0 0 chr13 65438982 65439012 -36434157 + AT_rich Low_complexity Low_complexity 1 30 0 247 281 198 0 chr13 65440081 65440177 -36432992 - MIR SINE MIR -64 144 30 386 284 162 0 chr13 65440321 65440469 -36432700 - MIR SINE MIR -1 261 90 196 317 92 25 chr13 65440536 65440656 -36432513 - L2 LINE L2 -18 3295 3168 24 96 0 0 chr13 65440761 65440834 -36432335 + AT_rich Low_complexity Low_complexity 1 73 0 234 233 56 22 chr13 65441887 65441977 -36431192 + L3 LINE CR1 815 907 -670 455 257 7 64 chr13 65442157 65442297 -36430872 - MIR SINE MIR -74 188 57 479 244 8 23 chr13 65442672 65442803 -36430366 - LTR52 LTR ERVL -292 129 1 580 270 112 53 chr13 65442806 65443429 -36429740 - HAL1 LINE L1 -875 1632 973 345 287 101 78 chr13 65443446 65443704 -36429465 - MLT1J LTR MaLR -18 493 230 2128 107 7 3 chr13 65443722 65444020 -36429149 - AluSc SINE Alu -10 299 1 305 263 14 13 chr13 65444061 65444155 -36429014 - MLT1J LTR MaLR -299 268 134 28 29 0 0 chr13 65445411 65445446 -36427723 + AT_rich Low_complexity Low_complexity 1 35 0 2737 147 7 7 chr13 65445697 65446133 -36427036 - Tigger2 DNA MER2_type -3 2715 2280 281 105 0 0 chr13 65446143 65446181 -36426988 + MER8 DNA MER2_type 199 236 -3 1778 152 35 69 chr13 65446215 65446590 -36426579 - MLT1B LTR MaLR 0 390 29 438 289 95 19 chr13 65446697 65446908 -36426261 - L2 LINE L2 -145 3168 2942 * 884 243 18 0 chr13 65446889 65447107 -36426062 - L2 LINE L2 -657 2657 2436 581 224 9 0 chr13 65447109 65447216 -36425953 + MER58 DNA MER1_type 3 110 -105 716 341 77 20 chr13 65447292 65447644 -36425525 - L2 LINE L2 -880 2434 2063 2561 4 0 0 chr13 65448215 65448490 -36424679 - AluYb8 SINE Alu -5 313 39 742 298 68 34 chr13 65448494 65448964 -36424205 + L1M4 LINE L1 4900 5385 -761 235 274 21 21 chr13 65449060 65449155 -36424014 + MLT1J LTR MaLR 400 494 -17 882 300 97 26 chr13 65449318 65450149 -36423020 + L1ME3A LINE L1 4615 5560 -610 1925 137 7 13 chr13 65450149 65450448 -36422721 + AluSx SINE Alu 1 297 -15 882 300 97 26 chr13 65450448 65450803 -36422366 + L1ME3A LINE L1 5560 5888 -282 1610 219 68 6 chr13 65451329 65451681 -36421488 - MLT1A2 LTR MaLR 0 374 1 597 254 85 13 chr13 65451960 65452196 -36420973 - L1ME2 LINE L1 -10 6088 5836 651 165 74 0 chr13 65452197 65452318 -36420851 + MER44D DNA MER2_type 1 130 -575 242 227 173 13 chr13 65452321 65452396 -36420773 + MER44D DNA MER2_type 517 603 -2 3941 223 97 34 chr13 65452398 65453833 -36419336 - L1ME2 LINE L1 -272 5826 4483 273 98 0 0 chr13 65453833 65453874 -36419295 + (TA)n Simple_repeat Simple_repeat 2 42 0 207 0 0 0 chr13 65453873 65453896 -36419273 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 3941 223 97 34 chr13 65453874 65454699 -36418470 - L1ME2 LINE L1 -1615 4483 3441 550 283 78 50 chr13 65454690 65455012 -36418157 - L1ME2 LINE L1 -5703 367 37 * 536 338 94 0 chr13 65455476 65455710 -36417459 + MIR SINE MIR 3 258 -4 285 226 24 36 chr13 65455824 65455908 -36417261 - MIR SINE MIR -94 168 86 406 219 94 0 chr13 65456316 65456412 -36416757 + MER81 DNA DNA 4 108 -6 286 311 58 10 chr13 65456476 65456579 -36416590 - L3b LINE CR1 -274 1309 1202 381 284 0 0 chr13 65456684 65456786 -36416383 - L3b LINE CR1 -379 1204 1103 37 0 0 0 chr13 65457933 65457970 -36415199 + AT_rich Low_complexity Low_complexity 1 37 0 436 186 81 32 chr13 65458538 65458662 -36414507 - L1ME1 LINE L1 -1 6165 6036 494 303 87 18 chr13 65458837 65459055 -36414114 - MIR SINE MIR -15 247 15 19632 33 1 0 chr13 65459326 65462471 -36410698 + L1PA3 LINE L1 3007 6150 -5 543 117 0 0 chr13 65463020 65463097 -36410072 + AluSg/x SINE Alu 219 295 -17 355 329 151 7 chr13 65463825 65464117 -36409052 - L2 LINE L2 -661 2653 2320 2080 124 37 0 chr13 65465300 65465476 -36407693 - AluSq SINE Alu -3 310 117 248 0 0 30 chr13 65465476 65465509 -36407660 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2080 124 37 0 chr13 65465509 65465631 -36407538 - AluSq SINE Alu -196 117 1 319 320 85 62 chr13 65467160 65467419 -36405750 + L3 LINE CR1 199 463 -1114 679 280 70 45 chr13 65467423 65467666 -36405503 + MIR SINE MIR 13 261 -1 1180 351 110 21 chr13 65467762 65468653 -36404516 + L3 LINE CR1 549 1518 -59 217 318 15 15 chr13 65468628 65468694 -36404475 + L3b LINE CR1 1517 1582 -1 * 2412 74 3 0 chr13 65468895 65469192 -36403977 + AluSc SINE Alu 1 298 -11 2286 95 0 3 chr13 65469352 65469648 -36403521 + AluSg SINE Alu 1 295 -15 476 259 7 35 chr13 65470597 65470740 -36402429 - MIR SINE MIR 0 262 124 1600 186 14 30 chr13 65470742 65471081 -36402088 + AluJb SINE Alu 1 334 0 184 381 93 0 chr13 65471084 65471181 -36401988 - MIR SINE MIR -146 116 11 247 352 95 0 chr13 65471387 65471492 -36401677 - L2 LINE L2 -1 3271 3157 571 337 58 10 chr13 65471504 65471795 -36401374 + L2 LINE L2 2568 2872 -442 589 296 31 0 chr13 65473024 65473186 -36399983 + MLT2B3 LTR ERVL 1 167 -387 6608 134 16 2 chr13 65473186 65474160 -36399009 + HERVL-B3 LTR ERVL 3948 4935 -719 2153 46 0 0 chr13 65474163 65474422 -36398747 - L1PA6 LINE L1 -357 5797 5539 2897 68 0 0 chr13 65474422 65474780 -36398389 + L1PA6 LINE L1 5783 6152 -2 630 101 0 20 chr13 65474920 65475019 -36398150 + LTR7 LTR ERV1 352 448 -2 597 120 94 0 chr13 65475145 65475262 -36397907 - MER63 DNA MER1_type -31 1029 902 27 0 0 0 chr13 65475285 65475312 -36397857 + AT_rich Low_complexity Low_complexity 1 27 0 4505 127 15 28 chr13 65475312 65475759 -36397410 + HERVL-B3 LTR ERVL 4936 5372 -282 2265 98 0 22 chr13 65475759 65476074 -36397095 + AluSg SINE Alu 1 308 -2 4505 127 15 28 chr13 65476074 65476351 -36396818 + HERVL-B3 LTR ERVL 5372 5651 -3 2307 189 29 81 chr13 65476359 65476544 -36396625 + MLT2B3 LTR ERVL 2 195 -359 4569 117 48 28 chr13 65476544 65477307 -36395862 - MER4E LTR ERV1 0 779 1 2307 189 29 81 chr13 65477307 65477702 -36395467 + MLT2B3 LTR ERVL 195 552 -2 30 27 0 0 chr13 65479662 65479699 -36393470 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 65480696 65480716 -36392453 + (CA)n Simple_repeat Simple_repeat 2 21 0 414 279 8 54 chr13 65480894 65481023 -36392146 + L2 LINE L2 3191 3313 0 538 83 67 0 chr13 65483640 65483760 -36389409 + (TA)n Simple_repeat Simple_repeat 2 129 0 207 189 0 0 chr13 65483828 65483865 -36389304 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 186 235 0 0 chr13 65484171 65484205 -36388964 + MIR SINE MIR 217 250 -12 313 346 24 24 chr13 65485163 65485290 -36387879 - MIR SINE MIR -55 153 27 1144 166 22 0 chr13 65486099 65486322 -36386847 - L1MB5 LINE L1 -8 6166 5939 198 71 0 0 chr13 65486642 65486670 -36386499 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 252 122 0 0 chr13 65486834 65486875 -36386294 + (CA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr13 65488158 65488181 -36384988 + AT_rich Low_complexity Low_complexity 1 23 0 298 193 36 21 chr13 65488456 65488596 -36384573 + GA-rich Low_complexity Low_complexity 2 143 0 356 326 37 30 chr13 65489016 65489151 -36384018 - L2 LINE L2 -1 3271 3136 507 301 78 67 chr13 65489189 65489458 -36383711 + L2 LINE L2 2997 3268 -4 557 165 47 0 chr13 65490954 65491081 -36382088 + L1MA7 LINE L1 6158 6290 -1 38 39 0 0 chr13 65491638 65491690 -36381479 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr13 65494190 65494219 -36378950 + AT_rich Low_complexity Low_complexity 1 29 0 784 247 58 31 chr13 65495033 65495256 -36377913 + MIR SINE MIR 24 252 -10 333 0 0 0 chr13 65495423 65495460 -36377709 + (CA)n Simple_repeat Simple_repeat 2 38 0 210 268 72 10 chr13 65496649 65496746 -36376423 - MIR SINE MIR -31 231 129 5302 159 43 8 chr13 65497054 65499059 -36374110 - L1MA8 LINE L1 -4 7247 5177 5888 214 14 2 chr13 65499062 65500236 -36372933 + L1PA12 LINE L1 103 1291 -6290 * 6127 230 122 21 chr13 65500235 65501312 -36371857 - L1MA8 LINE L1 -4319 2788 1821 243 0 0 0 chr13 65501312 65501339 -36371830 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 6127 230 122 21 chr13 65501339 65502796 -36370373 - L1MA8 LINE L1 -5286 1821 1 765 444 54 11 chr13 65502867 65503146 -36370023 + L1MA9 LINE L1 6022 6312 0 1538 245 91 35 chr13 65503173 65503691 -36369478 + MLT1H LTR MaLR 1 547 -2 323 198 23 81 chr13 65503694 65503780 -36369389 - MIR SINE MIR -170 92 12 487 196 9 18 chr13 65505119 65505231 -36367938 + MER94 DNA DNA 2 112 -22 342 296 47 47 chr13 65506625 65506794 -36366375 - MIR3 SINE MIR -24 184 16 384 285 20 95 chr13 65508514 65508660 -36364509 + MIR SINE MIR 74 203 -59 1600 198 3 21 chr13 65508660 65508948 -36364221 + AluJo SINE Alu 14 296 -16 384 285 20 95 chr13 65508948 65509001 -36364168 + MIR SINE MIR 203 258 -4 808 164 0 8 chr13 65509174 65509302 -36363867 + FLAM_C SINE Alu 2 128 -5 36 23 0 0 chr13 65509356 65509399 -36363770 + AT_rich Low_complexity Low_complexity 1 43 0 190 333 15 0 chr13 65511485 65511551 -36361618 - MIR SINE MIR 0 262 196 470 263 11 0 chr13 65511554 65511729 -36361440 + (TATG)n Simple_repeat Simple_repeat 2 178 0 742 268 33 11 chr13 65511758 65511941 -36361228 - MIR SINE MIR -58 204 18 23 0 0 0 chr13 65512568 65512591 -36360578 + AT_rich Low_complexity Low_complexity 1 23 0 180 135 0 0 chr13 65513903 65513940 -36359229 + (CATG)n Simple_repeat Simple_repeat 2 38 0 204 67 0 0 chr13 65515078 65515108 -36358061 + (TA)n Simple_repeat Simple_repeat 1 30 0 2071 122 0 7 chr13 65516256 65516550 -36356619 - AluSc SINE Alu -17 292 1 613 154 39 31 chr13 65517053 65517183 -36355986 + L1PB4 LINE L1 5589 5719 -437 377 214 41 0 chr13 65517186 65517284 -36355885 + MER52A LTR ERV1 1 102 -1653 6398 191 25 38 chr13 65517291 65518741 -36354428 + MER52A LTR ERV1 368 1751 -4 2539 116 27 27 chr13 65518742 65519143 -36354026 + L1PB4 LINE L1 5716 6119 -37 2157 133 0 16 chr13 65519143 65519459 -36353710 + AluSx SINE Alu 1 311 -1 2539 116 27 27 chr13 65519459 65519497 -36353672 + L1PB4 LINE L1 6118 6155 -1 452 286 43 12 chr13 65519511 65519672 -36353497 - MIR SINE MIR -93 169 4 355 242 167 0 chr13 65522012 65522132 -36351037 + L2 LINE L2 2944 3083 -230 7556 216 32 47 chr13 65522689 65523041 -36350128 - L1MB8 LINE L1 -5 6173 5817 2421 84 0 3 chr13 65523041 65523349 -36349820 - AluSg SINE Alu -3 307 1 7556 216 32 47 chr13 65523349 65526470 -36346699 - L1MB8 LINE L1 -361 5817 2752 2420 86 27 69 chr13 65526472 65526878 -36346291 - L1PA14 LINE L1 -3 6158 5770 42821 34 0 2 chr13 65526900 65533063 -36340106 - L1PA3 LINE L1 -3 6152 3 2244 94 8 48 chr13 65533058 65533430 -36339739 - L1PA14 LINE L1 -377 5784 5428 * 4085 178 16 3 chr13 65533436 65534283 -36338886 - L1PA14 LINE L1 -1392 4754 3897 681 221 142 0 chr13 65534295 65534499 -36338670 - L1MB8 LINE L1 -3380 2766 2534 543 282 35 0 chr13 65534522 65534696 -36338473 + LTR16A LTR ERVL 256 435 -15 1179 322 20 52 chr13 65534708 65535456 -36337713 + HERV16 LTR ERVL 13 736 -4260 713 262 13 34 chr13 65535567 65535804 -36337365 + HERV16 LTR ERVL 914 1145 -3851 1526 254 63 67 chr13 65536147 65536863 -36336306 + HERV16 LTR ERVL 1613 2325 -2671 8333 46 1 1 chr13 65536979 65538800 -36334369 + L1PA5 LINE L1 4351 6170 0 1510 343 64 23 chr13 65538840 65540056 -36333113 + ERVL LTR ERVL 3889 5158 -606 992 338 20 7 chr13 65540437 65540840 -36332329 + LTR16A LTR ERVL 16 423 -27 249 83 0 0 chr13 65541252 65541288 -36331881 + (CA)n Simple_repeat Simple_repeat 1 36 0 453 116 58 0 chr13 65542636 65542722 -36330447 + L1MA8 LINE L1 6201 6291 0 31 104 0 0 chr13 65542821 65542936 -36330233 + AT_rich Low_complexity Low_complexity 1 115 0 201 39 0 0 chr13 65542945 65542971 -36330198 + (CA)n Simple_repeat Simple_repeat 1 26 0 262 234 0 47 chr13 65543100 65543207 -36329962 + (TA)n Simple_repeat Simple_repeat 2 103 0 242 202 36 71 chr13 65543699 65543783 -36329386 + MLT1I LTR MaLR 323 403 -6 4622 75 0 11 chr13 65546203 65546816 -36326353 + L1PA8A LINE L1 5525 6130 -1 447 232 107 71 chr13 65548106 65548335 -36324834 - MLT1J LTR MaLR -166 449 139 426 354 141 8 chr13 65548338 65548700 -36324469 - HERVL LTR ERVL -1207 4447 4038 292 248 43 17 chr13 65548826 65548943 -36324226 - HERVL LTR ERVL -1766 3998 3879 11296 58 0 5 chr13 65549513 65550937 -36322232 + L1P LINE L1 9 1425 -4721 3766 163 19 5 chr13 65551037 65551893 -36321276 - L1MA8 LINE L1 -347 5944 5078 193 311 34 96 chr13 65552026 65552203 -36320966 - L2 LINE L2 -935 2379 2214 593 291 18 36 chr13 65553837 65554112 -36319057 + L1MD2 LINE L1 1474 1743 -4653 3051 272 51 20 chr13 65554310 65555452 -36317717 + L1MD2 LINE L1 3759 4935 -1280 1359 236 102 28 chr13 65555486 65555880 -36317289 + L1MD2 LINE L1 6006 6428 0 427 300 152 17 chr13 65555970 65556207 -36316962 + L1MEc LINE L1 2205 2473 -3742 560 82 0 0 chr13 65606460 65606533 -36266636 - Alu SINE Alu -237 73 1 2665 29 0 0 chr13 65606582 65606892 -36266277 - AluYa5 SINE Alu -1 310 1 6831 63 13 0 chr13 65606894 65608519 -36264650 - L1PA7 LINE L1 0 6154 4520 1288 237 90 16 chr13 65608619 65609033 -36264136 - MLT1G LTR MaLR -73 494 5 2779 116 36 0 chr13 65609386 65609799 -36263370 - MSTA LTR MaLR 0 428 1 1821 157 0 14 chr13 65610761 65611047 -36262122 - AluSx SINE Alu -25 287 6 234 239 0 0 chr13 65611245 65611316 -36261853 + (TA)n Simple_repeat Simple_repeat 1 71 0 1594 221 68 35 chr13 65613113 65613596 -36259573 + MLT1D LTR MaLR 7 505 0 718 182 88 0 chr13 65613645 65613804 -36259365 + MER63A DNA MER1_type 38 210 0 500 163 57 35 chr13 65613805 65613946 -36259223 - MER103 DNA DNA -13 153 10 294 79 0 0 chr13 65615616 65615654 -36257515 + U2 snRNA snRNA 1 38 -150 289 294 34 40 chr13 65616454 65616631 -36256538 + MLT1J LTR MaLR 236 411 -100 205 263 18 0 chr13 65616815 65616872 -36256297 + MIR SINE MIR 183 240 -22 2279 126 8 25 chr13 65616985 65617382 -36255787 - L1MA8 LINE L1 -281 6010 5621 244 171 24 0 chr13 65617666 65617748 -36255421 + (TA)n Simple_repeat Simple_repeat 2 85 0 308 125 16 0 chr13 65617780 65617844 -36255325 + T-rich Low_complexity Low_complexity 4 68 0 227 275 14 0 chr13 65619557 65619626 -36253543 + MIR3 SINE MIR 126 195 -13 2159 108 3 10 chr13 65619962 65620267 -36252902 + AluSp SINE Alu 1 303 -10 193 324 0 15 chr13 65620581 65620649 -36252520 - L2 LINE L2 0 3272 3206 863 198 19 33 chr13 65620656 65620868 -36252301 - MER3 DNA MER1_type 0 209 1 1444 186 20 93 chr13 65621102 65621499 -36251670 - MLT1A2 LTR MaLR 0 374 7 242 360 80 19 chr13 65621549 65621813 -36251356 - L2 LINE L2 -402 2912 2633 556 205 159 7 chr13 65622227 65622378 -36250791 - MER63A DNA MER1_type 0 210 37 2058 115 0 56 chr13 65622451 65622772 -36250397 + AluSx SINE Alu 1 303 -9 346 298 161 18 chr13 65623249 65623467 -36249702 - MIR SINE MIR -12 250 2 394 280 70 45 chr13 65624661 65624849 -36248320 - MIR SINE MIR -42 220 30 24 111 0 0 chr13 65625344 65625452 -36247717 + AT_rich Low_complexity Low_complexity 1 108 0 611 284 157 23 chr13 65625982 65626370 -36246799 + L3 LINE CR1 423 862 -715 360 64 0 0 chr13 65627672 65627719 -36245450 + (TG)n Simple_repeat Simple_repeat 1 47 0 333 267 58 2 chr13 65627989 65628124 -36245045 - MIR SINE MIR -55 153 33 207 69 0 0 chr13 65629075 65629104 -36244065 + (CAT)n Simple_repeat Simple_repeat 2 30 0 180 354 12 24 chr13 65629432 65629514 -36243655 + L2 LINE L2 3192 3272 0 360 165 0 143 chr13 65630732 65630865 -36242304 - Charlie7 DNA MER1_type -2 2610 2497 22622 166 30 30 chr13 65633618 65639626 -36233543 - L1PA10 LINE L1 -312 6171 52 3777 185 33 43 chr13 65639849 65640756 -36232413 + L1MB3 LINE L1 5062 5977 -206 2147 111 0 26 chr13 65640756 65641062 -36232107 + AluSc SINE Alu 1 298 -11 3777 185 33 43 chr13 65641062 65641234 -36231935 + L1MB3 LINE L1 5977 6128 -55 2426 90 0 0 chr13 65641234 65641534 -36231635 + AluSq SINE Alu 1 300 -13 3777 185 33 43 chr13 65641534 65641584 -36231585 + L1MB3 LINE L1 6128 6177 -6 3406 202 86 58 chr13 65641612 65642034 -36231135 + L1MC3 LINE L1 6705 7114 -671 226 209 0 0 chr13 65642034 65642077 -36231092 + MLT1F1 LTR MaLR 35 77 -490 3406 202 86 58 chr13 65642077 65642689 -36230480 + L1MC3 LINE L1 7114 7785 0 270 238 29 64 chr13 65643182 65643354 -36229815 + L1ME LINE L1 5717 5882 -239 377 332 119 5 chr13 65643645 65643847 -36229322 - L2 LINE L2 -972 2342 2118 442 270 0 0 chr13 65643971 65644071 -36229098 + L1ME LINE L1 5500 5599 -565 233 213 0 0 chr13 65644221 65644268 -36228901 + GA-rich Low_complexity Low_complexity 3 49 0 288 204 0 19 chr13 65646970 65647024 -36226145 + FLAM SINE Alu 68 120 -13 21 0 0 0 chr13 65647086 65647107 -36226062 + AT_rich Low_complexity Low_complexity 1 21 0 2150 104 7 0 chr13 65647300 65647597 -36225572 - AluSq SINE Alu -1 312 14 2856 65 35 5 chr13 65647665 65648063 -36225106 + L1PA8 LINE L1 5763 6172 0 469 286 40 29 chr13 65650661 65650836 -36222333 - MIR SINE MIR -79 183 7 276 30 0 0 chr13 65652855 65652888 -36220281 + (CA)n Simple_repeat Simple_repeat 2 34 0 246 300 130 10 chr13 65653999 65654122 -36219047 + MIR SINE MIR 13 148 -60 255 310 0 0 chr13 65654131 65654202 -36218967 - L2 LINE L2 -1 3271 3201 1717 168 35 15 chr13 65654298 65654638 -36218531 - MER7A DNA MER2_type 0 346 2 206 268 54 0 chr13 65655901 65655957 -36217212 - MIR SINE MIR -99 163 105 235 239 30 30 chr13 65655966 65656033 -36217136 + MIR SINE MIR 126 192 -70 274 331 247 10 chr13 65656572 65657029 -36216140 + L2 LINE L2 2750 3309 -4 379 294 75 11 chr13 65657309 65657496 -36215673 + L1ME LINE L1 5344 5542 -2266 468 277 62 6 chr13 65657733 65657910 -36215259 + L1ME LINE L1 5546 5732 -438 323 259 54 20 chr13 65657984 65658131 -36215038 - L1MEd LINE L1 -3344 2785 2634 718 296 82 99 chr13 65658263 65658548 -36214621 - L1MEd LINE L1 -5307 812 524 2072 120 24 0 chr13 65658548 65658840 -36214329 + AluSx SINE Alu 1 299 -13 718 296 82 99 chr13 65658840 65659283 -36213886 - L1MEd LINE L1 -5595 524 96 200 328 30 0 chr13 65659296 65659363 -36213806 + MIR SINE MIR 157 225 -37 4309 176 11 27 chr13 65660054 65660229 -36212940 - L1MB7 LINE L1 -5 6179 6003 859 178 97 144 chr13 65660229 65660612 -36212557 + MLT1A1 LTR MaLR 1 365 0 4309 176 11 27 chr13 65660612 65661319 -36211850 - L1MB7 LINE L1 -181 6003 5311 22 70 0 0 chr13 65661319 65661362 -36211807 + AT_rich Low_complexity Low_complexity 1 43 0 373 274 66 33 chr13 65662343 65662584 -36210585 + L1MC3 LINE L1 5676 5924 -1884 388 237 10 10 chr13 65664067 65664164 -36209005 + L1MC3 LINE L1 7184 7280 -505 33608 79 6 6 chr13 65664167 65669578 -36203591 + L1PA6 LINE L1 751 6152 -2 1601 164 21 4 chr13 65669586 65669866 -36203303 + Tigger2 DNA MER2_type 2433 2717 -1 902 172 59 81 chr13 65669866 65670139 -36203030 + L1MC3 LINE L1 7519 7785 0 321 26 0 0 chr13 65670476 65670514 -36202655 + (TG)n Simple_repeat Simple_repeat 2 39 0 1120 95 0 1 chr13 65670694 65670851 -36202318 + L1P3 LINE L1 1 471 -5990 23617 129 15 87 chr13 65670920 65672662 -36200507 + L1P LINE L1 2 1868 -4278 2092 128 0 28 chr13 65672662 65672981 -36200188 + AluSg SINE Alu 1 310 0 23617 129 15 87 chr13 65672981 65676037 -36197132 + L1P LINE L1 1868 4453 -1693 6595 203 27 8 chr13 65676144 65678781 -36194388 + L1MC1 LINE L1 3641 6328 -5 33140 97 12 57 chr13 65678900 65685345 -36187824 - L1PA6 LINE L1 -1 6153 11 337 352 88 58 chr13 65685355 65685889 -36187280 + L1PBb LINE L1 5 554 -6295 5764 239 63 28 chr13 65686449 65689655 -36183514 + L1PBb LINE L1 1025 4511 -2337 2078 150 36 14 chr13 65689660 65690021 -36183148 + THE1C LTR MaLR 7 375 0 5513 77 33 0 chr13 65690060 65690824 -36182345 + L1PA12 LINE L1 5373 6161 -7 4653 148 27 5 chr13 65690827 65691651 -36181518 + L1PB4 LINE L1 5315 6157 -9 1098 180 0 24 chr13 65691654 65691860 -36181309 + AluJo SINE Alu 96 296 -16 1317 176 35 44 chr13 65692452 65692489 -36180680 - LTR45B LTR ERV1 -132 357 321 3358 79 22 5 chr13 65692489 65692934 -36180235 - MLT2A2 LTR ERVL 0 453 1 1317 176 35 44 chr13 65692934 65693205 -36179964 - LTR45B LTR ERV1 -168 321 3 463 262 110 7 chr13 65693238 65693383 -36179786 - MIR SINE MIR -101 161 2 2845 163 35 41 chr13 65695122 65695907 -36177262 - L1MCa LINE L1 -4009 2417 1543 * 5802 195 43 14 chr13 65695904 65697169 -36176000 - L1MCa LINE L1 -5105 1321 20 265 330 55 64 chr13 65697976 65698212 -36174957 + L2 LINE L2 2952 3185 -87 460 318 195 34 chr13 65699188 65700529 -36172640 + L2 LINE L2 616 2172 -1142 1296 199 37 15 chr13 65700530 65700982 -36172187 + MLT1D LTR MaLR 1 505 0 332 301 106 64 chr13 65701050 65701457 -36171712 - MLT1J1 LTR MaLR -5 441 18 785 348 103 31 chr13 65701464 65702423 -36170746 + L2 LINE L2 2227 3271 -1 21 36 0 0 chr13 65702535 65702563 -36170606 + AT_rich Low_complexity Low_complexity 1 28 0 270 95 0 0 chr13 65702755 65702797 -36170372 + (TG)n Simple_repeat Simple_repeat 1 42 0 1412 163 35 123 chr13 65702798 65703198 -36169971 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr13 65703577 65703601 -36169568 + AT_rich Low_complexity Low_complexity 1 24 0 637 296 48 5 chr13 65704700 65704889 -36168280 - MIR SINE MIR 0 262 66 406 304 51 36 chr13 65704969 65705245 -36167924 - L2 LINE L2 -170 3102 2823 249 349 6 57 chr13 65705592 65705659 -36167510 - L2 LINE L2 -666 2648 2579 884 214 31 58 chr13 65705659 65705883 -36167286 + MER20 DNA MER1_type 2 219 0 249 349 6 57 chr13 65705883 65705990 -36167179 - L2 LINE L2 -735 2579 2483 261 321 82 25 chr13 65706100 65706259 -36166910 - L2 LINE L2 -830 2484 2317 3365 61 0 0 chr13 65707767 65708192 -36164977 - L1PA5 LINE L1 -11 6143 5719 281 326 91 29 chr13 65710238 65710413 -36162756 - L2 LINE L2 -530 2784 2599 794 158 97 18 chr13 65711921 65712086 -36161083 + MER45A DNA AcHobo 1 178 0 543 281 158 10 chr13 65712836 65713242 -36159927 - L1M4 LINE L1 -1479 4667 4202 1478 159 16 0 chr13 65713242 65713497 -36159672 - Tigger7 DNA MER2_type -8 2483 2225 423 58 159 0 chr13 65713497 65713566 -36159603 - MADE1 DNA Mariner 0 80 1 1219 266 86 72 chr13 65713625 65714491 -36158678 - L1M4 LINE L1 -1971 4175 3284 1957 152 0 3 chr13 65714491 65714781 -36158388 + AluSx SINE Alu 3 291 -21 1219 266 86 72 chr13 65714781 65715159 -36158010 - L1M4 LINE L1 -2862 3284 2913 213 308 31 0 chr13 65717449 65717514 -36155655 + MIR3 SINE MIR 123 189 -19 44 20 0 0 chr13 65718278 65718329 -36154840 + AT_rich Low_complexity Low_complexity 1 51 0 273 330 48 10 chr13 65718346 65718449 -36154720 - MIR3 SINE MIR -31 177 71 230 372 18 9 chr13 65718753 65718866 -36154303 + MIR SINE MIR 2 115 -147 854 318 115 35 chr13 65719791 65720765 -36152404 + L2 LINE L2 2217 3272 0 245 250 26 13 chr13 65721746 65721822 -36151347 + CT-rich Low_complexity Low_complexity 3 79 0 359 281 43 60 chr13 65721858 65722073 -36151096 - MIR SINE MIR -18 244 33 2247 84 14 0 chr13 65722410 65722697 -36150472 + AluSp SINE Alu 1 291 -22 1534 176 71 50 chr13 65722971 65723392 -36149777 + MSTB1 LTR MaLR 1 430 -2 15114 129 18 10 chr13 65723899 65726298 -36146871 + Tigger1 DNA MER2_type 1 2418 0 4560 68 8 10 chr13 65726762 65727375 -36145794 + L1PA10 LINE L1 5545 6156 -12 22 56 0 0 chr13 65727503 65727539 -36145630 + AT_rich Low_complexity Low_complexity 1 36 0 827 187 84 98 chr13 65728156 65728569 -36144600 + MLT1D LTR MaLR 1 495 -10 2273 129 14 0 chr13 65729123 65729472 -36143697 + L1PA15 LINE L1 5811 6164 -1 2473 88 0 0 chr13 65730229 65730536 -36142633 + AluSq SINE Alu 2 308 -5 354 304 90 50 chr13 65730705 65730906 -36142263 + MIR SINE MIR 35 243 -19 342 297 31 56 chr13 65730992 65731187 -36141982 - L1ME4a LINE L1 -48 6073 5884 27 29 0 0 chr13 65731424 65731458 -36141711 + AT_rich Low_complexity Low_complexity 1 34 0 225 146 0 42 chr13 65732407 65732455 -36140714 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 735 285 145 28 chr13 65733159 65733587 -36139582 + MLT1J LTR MaLR 3 480 -31 718 295 78 4 chr13 65733961 65734205 -36138964 - MIR SINE MIR 0 262 1 2189 108 3 3 chr13 65734717 65735013 -36138156 + AluSx SINE Alu 3 298 -14 756 300 88 11 chr13 65735454 65735714 -36137455 + MLT1J LTR MaLR 2 281 -230 1379 226 108 37 chr13 65735751 65736184 -36136985 + MLT1D LTR MaLR 20 483 -22 411 318 50 15 chr13 65736207 65736405 -36136764 + MLT1J LTR MaLR 292 496 -15 294 274 234 0 chr13 65736881 65737005 -36136164 + MIR SINE MIR 95 247 -15 913 177 79 10 chr13 65740267 65740470 -36132699 - MER20 DNA MER1_type -2 217 1 273 29 0 0 chr13 65740920 65740954 -36132215 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr13 65741813 65741834 -36131335 + AT_rich Low_complexity Low_complexity 1 21 0 320 347 60 12 chr13 65742087 65742338 -36130831 + L1ME LINE L1 5555 5817 -304 32 26 0 0 chr13 65742562 65742601 -36130568 + AT_rich Low_complexity Low_complexity 1 39 0 2262 117 0 0 chr13 65742611 65742909 -36130260 - AluSx SINE Alu -14 298 1 1889 143 61 28 chr13 65743055 65743418 -36129751 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr13 65743960 65743988 -36129181 + AT_rich Low_complexity Low_complexity 1 28 0 502 224 224 0 chr13 65744006 65744158 -36129011 + MER5A DNA MER1_type 2 187 -2 545 286 33 0 chr13 65745230 65745412 -36127757 - MER5A DNA MER1_type 0 189 2 237 325 25 56 chr13 65745460 65745620 -36127549 + MLT1L LTR MaLR 5 159 -456 285 294 67 17 chr13 65745887 65746006 -36127163 + MLT1L LTR MaLR 412 536 -79 356 182 11 0 chr13 65746043 65746131 -36127038 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 311 348 119 36 chr13 65746451 65747030 -36126139 + L2 LINE L2 2634 3256 -57 276 246 58 0 chr13 65747177 65747246 -36125923 - MIR SINE MIR -98 164 92 206 272 227 8 chr13 65748227 65748383 -36124786 + MIR3 SINE MIR 3 185 -70 281 389 70 37 chr13 65748526 65748796 -36124373 + L2 LINE L2 2993 3271 -1 1123 145 34 21 chr13 65751405 65751640 -36121529 - L1MB8 LINE L1 0 6178 5941 1028 239 93 93 chr13 65752082 65752588 -36120581 + MLT1J LTR MaLR 1 506 -5 212 372 140 9 chr13 65753068 65753404 -36119765 + L2 LINE L2 2598 2977 -337 300 310 55 21 chr13 65753569 65753714 -36119455 + L2 LINE L2 3163 3312 -1 1947 148 143 13 chr13 65753780 65754159 -36119010 + MSTA LTR MaLR 1 428 0 212 314 14 0 chr13 65754563 65754633 -36118536 + L2 LINE L2 2365 2435 -879 1342 193 48 15 chr13 65754635 65754972 -36118197 + MLT1A1 LTR MaLR 1 348 -17 416 329 62 104 chr13 65754984 65755485 -36117684 + L2 LINE L2 2435 2914 -400 1053 214 4 13 chr13 65755509 65755743 -36117426 - AluJo SINE Alu 0 312 81 2181 109 0 0 chr13 65755751 65756048 -36117121 - AluSg SINE Alu 0 306 10 415 295 23 8 chr13 65756086 65756215 -36116954 + L2 LINE L2 3142 3272 0 26 30 0 0 chr13 65756789 65756822 -36116347 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr13 65758072 65758096 -36115073 + AT_rich Low_complexity Low_complexity 1 24 0 1115 195 13 25 chr13 65760453 65760689 -36112480 + AluJo SINE Alu 57 289 -23 24 0 0 0 chr13 65760689 65760713 -36112456 + AT_rich Low_complexity Low_complexity 1 24 0 21 21 0 64 chr13 65761116 65761163 -36112006 + AT_rich Low_complexity Low_complexity 1 44 0 270 0 0 0 chr13 65761296 65761326 -36111843 + (A)n Simple_repeat Simple_repeat 1 30 0 320 281 111 30 chr13 65763465 65763600 -36109569 + MIR3 SINE MIR 20 165 -43 295 119 0 0 chr13 65764612 65764654 -36108515 + 5S rRNA rRNA 1 42 -79 265 343 56 19 chr13 65765608 65765716 -36107453 - L2 LINE L2 -14 3258 3147 592 300 116 17 chr13 65765767 65766000 -36107169 + MIR SINE MIR 2 257 -5 821 246 119 51 chr13 65766916 65767429 -36105740 + MLT1H1 LTR MaLR 8 555 0 545 283 53 0 chr13 65767657 65767809 -36105360 - MIR SINE MIR -90 172 13 254 29 29 0 chr13 65768131 65768166 -36105003 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 1448 242 46 18 chr13 65768640 65769098 -36104071 - L1MC4a LINE L1 -106 7702 7232 352 341 6 49 chr13 65769130 65769294 -36103875 + MIR SINE MIR 15 171 -91 2622 24 0 0 chr13 65769631 65769925 -36103244 - AluY SINE Alu -17 294 1 4334 164 37 31 chr13 65770476 65771448 -36101721 - L1MA9 LINE L1 0 6312 5335 687 259 7 0 chr13 65771448 65771591 -36101578 + FRAM SINE Alu 1 143 -33 795 21 0 0 chr13 65771609 65771702 -36101467 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 272 123 35 0 chr13 65771702 65771759 -36101410 - L1M LINE L1 -952 5351 5293 292 284 26 72 chr13 65771918 65772112 -36101057 + L2 LINE L2 2946 3130 -183 535 335 100 44 chr13 65772242 65772723 -36100446 + L2 LINE L2 2804 3311 -2 266 214 71 29 chr13 65772997 65773067 -36100102 - MIR SINE MIR -55 153 81 627 0 12 24 chr13 65773090 65773175 -36099994 + (TA)n Simple_repeat Simple_repeat 2 85 0 187 268 0 0 chr13 65773941 65773982 -36099187 - MIR SINE MIR -4 258 218 335 206 108 103 chr13 65774157 65774380 -36098789 - L2 LINE L2 -1 3312 3089 218 392 10 0 chr13 65774359 65774461 -36098708 - L2 LINE L2 -440 2874 2772 * 21 0 0 0 chr13 65774560 65774581 -36098588 + AT_rich Low_complexity Low_complexity 1 21 0 182 301 14 82 chr13 65774732 65774805 -36098364 - L2 LINE L2 -4 3268 3201 225 86 17 155 chr13 65775544 65775602 -36097567 + MLT1E2 LTR MaLR 1 50 -455 1473 239 15 32 chr13 65775603 65776004 -36097165 + MLT1E2 LTR MaLR 27 420 -206 2089 143 10 0 chr13 65776593 65776894 -36096275 - AluSx SINE Alu -8 304 1 258 184 66 0 chr13 65777052 65777128 -36096041 + MER58B DNA MER1_type 67 147 -194 4714 139 83 5 chr13 65777128 65778007 -36095162 - Tigger3b DNA MER2_type 0 1231 284 451 229 0 10 chr13 65778009 65778105 -36095064 - Tigger3b DNA MER2_type -1128 103 9 722 176 75 37 chr13 65778113 65778301 -36094868 + MER58B DNA MER1_type 146 340 -1 25219 143 12 16 chr13 65778592 65778972 -36094197 - L1PA10 LINE L1 -10 6473 6093 2384 91 0 0 chr13 65778972 65779269 -36093900 - AluSq SINE Alu -16 297 1 25219 143 12 16 chr13 65779269 65784575 -36088594 - L1PA10 LINE L1 -390 6093 798 2360 189 46 2 chr13 65784605 65785086 -36088083 - L1PA10 LINE L1 -5373 502 1 490 183 11 0 chr13 65785582 65785675 -36087494 - MLT1B LTR MaLR -25 365 272 1512 187 14 24 chr13 65785952 65786285 -36086884 - AluJo SINE Alu 0 356 27 289 308 106 0 chr13 65787777 65787881 -36085288 - MLT1J LTR MaLR -80 431 317 296 271 93 19 chr13 65787914 65788021 -36085148 + MIR SINE MIR 40 154 -108 214 272 148 0 chr13 65788683 65788764 -36084405 + MIR SINE MIR 160 252 -10 2197 118 0 3 chr13 65789007 65789304 -36083865 + AluSg SINE Alu 1 296 -14 266 286 46 86 chr13 65789476 65789651 -36083518 + L2 LINE L2 3123 3290 -23 428 339 106 43 chr13 65789884 65790185 -36082984 + L2 LINE L2 2953 3272 0 3101 83 37 7 chr13 65790532 65790581 -36082588 - MLT2A1 LTR ERVL 0 444 398 396 40 0 0 chr13 65790581 65790631 -36082538 + (CA)n Simple_repeat Simple_repeat 2 51 0 3101 83 37 7 chr13 65790631 65791012 -36082157 - MLT2A1 LTR ERVL -46 398 1 23312 65 6 4 chr13 65791012 65794067 -36079102 - HERVL-A1 LTR ERVL 0 5654 2592 447 90 90 13 chr13 65794070 65794148 -36079021 - MLT2A1 LTR ERVL -360 84 1 1710 80 4 4 chr13 65794461 65794687 -36078482 + HERVL LTR ERVL 2757 2982 -2672 681 172 0 14 chr13 65795217 65795362 -36077807 + GA-rich Low_complexity Low_complexity 4 146 0 189 0 0 0 chr13 65795404 65795425 -36077744 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 2192 100 0 17 chr13 65795536 65795835 -36077334 - AluY SINE Alu -15 296 3 1446 126 177 90 chr13 65795835 65796188 -36076981 - MSTA LTR MaLR 0 428 1 229 335 108 36 chr13 65796189 65796383 -36076786 - MIR SINE MIR -54 208 1 781 199 48 18 chr13 65797011 65797177 -36075992 - FAM SINE Alu -4 171 1 1721 172 54 93 chr13 65797327 65797898 -36075271 - MER69 DNA AcHobo 0 2526 1978 462 259 213 35 chr13 65797950 65798147 -36075022 - MER69 DNA AcHobo -2119 407 176 368 255 137 0 chr13 65798187 65798289 -36074880 + MER69 DNA AcHobo 314 429 -2097 252 0 0 0 chr13 65799906 65799934 -36073235 + (TG)n Simple_repeat Simple_repeat 1 28 0 1606 174 7 50 chr13 65799965 65800287 -36072882 - AluJo SINE Alu 0 309 1 2432 85 0 0 chr13 65800290 65800597 -36072572 - AluSc SINE Alu -2 307 1 22 0 0 0 chr13 65800597 65800619 -36072550 + AT_rich Low_complexity Low_complexity 1 22 0 346 298 152 11 chr13 65800806 65800997 -36072172 + MIR SINE MIR 37 254 -8 3706 130 56 77 chr13 65803001 65803803 -36069366 + LTR1 LTR ERV1 1 785 0 1238 168 0 0 chr13 65804050 65804246 -36068923 - AluSg/x SINE Alu -11 299 104 37 0 0 0 chr13 65804386 65804423 -36068746 + AT_rich Low_complexity Low_complexity 1 37 0 1839 247 79 42 chr13 65805873 65806440 -36066729 + MLT1E LTR MaLR 1 588 -5 1802 148 25 85 chr13 65806539 65806694 -36066475 - THE1C LTR MaLR 0 375 212 1742 109 8 12 chr13 65806694 65806964 -36066205 + AluSg SINE Alu 37 305 0 1802 148 25 85 chr13 65806964 65807044 -36066125 - THE1C LTR MaLR -163 212 129 2202 110 13 0 chr13 65807044 65807352 -36065817 + AluSx SINE Alu 1 312 0 1802 148 25 85 chr13 65807352 65807513 -36065656 - THE1C LTR MaLR -246 129 1 1417 216 44 33 chr13 65808853 65809219 -36063950 - MLT1A2 LTR MaLR -4 370 1 486 299 82 26 chr13 65810747 65811015 -36062154 - MLT1J LTR MaLR 0 511 229 349 315 94 40 chr13 65811585 65812011 -36061158 - L1ME3A LINE L1 -342 5828 5380 941 182 49 25 chr13 65812047 65812250 -36060919 - AluJo SINE Alu -15 297 90 561 275 112 23 chr13 65812280 65812764 -36060405 - L1ME3A LINE L1 -804 5342 4816 2310 91 0 3 chr13 65812778 65813076 -36060093 + AluSq SINE Alu 1 297 -16 41 0 0 0 chr13 65813111 65813152 -36060017 + AT_rich Low_complexity Low_complexity 1 41 0 1962 172 38 85 chr13 65813958 65814486 -36058683 - MLT1D LTR MaLR -2 503 1 16314 67 10 5 chr13 65816817 65819753 -36053416 + L1PA6 LINE L1 3196 6153 -1 9474 213 38 9 chr13 65819872 65823475 -36049694 - L1MC1 LINE L1 -5 6608 2899 1480 187 62 35 chr13 65823489 65823923 -36049246 - L1MC1 LINE L1 -3991 2435 1990 2493 235 87 58 chr13 65824889 65825035 -36048134 - L1MD2 LINE L1 -1 6358 6218 2191 101 0 0 chr13 65825035 65825321 -36047848 + AluSx SINE Alu 1 286 -26 495 0 0 0 chr13 65825321 65825376 -36047793 + (CA)n Simple_repeat Simple_repeat 2 56 0 2493 235 87 58 chr13 65825376 65826117 -36047052 - L1MD2 LINE L1 -140 6219 5445 231 216 11 91 chr13 65826882 65826970 -36046199 + MER103 DNA DNA 39 119 -47 836 137 0 7 chr13 65827274 65827413 -36045756 + L1PA10 LINE L1 6018 6155 -13 23 33 0 0 chr13 65827419 65827449 -36045720 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr13 65827516 65827547 -36045622 + AT_rich Low_complexity Low_complexity 1 31 0 3718 166 39 5 chr13 65827551 65828404 -36044765 - L1M2 LINE L1 -762 5384 4592 21 0 0 0 chr13 65830159 65830180 -36042989 + AT_rich Low_complexity Low_complexity 1 21 0 1609 204 11 55 chr13 65830219 65830601 -36042568 + MLT1A1 LTR MaLR 1 365 0 329 345 88 7 chr13 65831134 65831282 -36041887 + L2 LINE L2 3109 3268 -4 27 0 0 0 chr13 65833307 65833334 -36039835 + AT_rich Low_complexity Low_complexity 1 27 0 2172 138 123 5 chr13 65833391 65833774 -36039395 + MSTA LTR MaLR 1 428 0 1419 147 106 44 chr13 65835633 65835926 -36037243 - AluJo SINE Alu -1 311 1 422 93 0 0 chr13 65836302 65836356 -36036813 + Charlie3 DNA MER1_type 2658 2711 0 2243 111 7 0 chr13 65836377 65836684 -36036485 + AluSx SINE Alu 1 309 -3 793 246 109 27 chr13 65836959 65837179 -36035990 - MIR SINE MIR -14 248 11 202 260 40 0 chr13 65837195 65837245 -36035924 + GA-rich Low_complexity Low_complexity 3 54 0 225 0 0 0 chr13 65839129 65839154 -36034015 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2082 110 4 0 chr13 65839158 65839431 -36033738 - AluSg SINE Alu -36 274 1 603 207 127 0 chr13 65840050 65840200 -36032969 + MER20 DNA MER1_type 51 219 0 583 281 6 11 chr13 65840481 65840659 -36032510 - MER5B DNA MER1_type -1 177 1 24 0 0 0 chr13 65841549 65841573 -36031596 + AT_rich Low_complexity Low_complexity 1 24 0 2061 121 3 23 chr13 65842108 65842415 -36030754 + AluSg SINE Alu 1 301 -9 221 330 40 10 chr13 65842679 65842779 -36030390 + MIR SINE MIR 32 134 -128 1173 202 3 125 chr13 65843419 65843756 -36029413 - AluSq SINE Alu -5 298 3 253 230 106 35 chr13 65843768 65843881 -36029288 + MIR SINE MIR 136 256 -6 22 56 0 0 chr13 65845029 65845065 -36028104 + AT_rich Low_complexity Low_complexity 1 36 0 289 294 81 0 chr13 65845332 65845468 -36027701 + L1ME4a LINE L1 5965 6111 -10 2516 171 15 0 chr13 65847750 65848219 -36024950 - L1MB1 LINE L1 -13 6155 5680 2160 164 37 28 chr13 65848219 65848310 -36024859 + L1M3 LINE L1 5237 5326 -842 2185 114 0 3 chr13 65848310 65848607 -36024562 + AluSx SINE Alu 1 296 -16 2160 164 37 28 chr13 65848607 65848762 -36024407 + L1M3 LINE L1 5326 5478 -690 2189 107 3 7 chr13 65848762 65849061 -36024108 + AluSq SINE Alu 1 298 -15 2160 164 37 28 chr13 65849061 65849279 -36023890 + L1M3 LINE L1 5478 5708 -460 189 0 0 0 chr13 65849337 65849358 -36023811 + (AAGTG)n Simple_repeat Simple_repeat 5 25 0 473 298 8 16 chr13 65850452 65850573 -36022596 + MIR SINE MIR 32 151 -111 309 252 104 22 chr13 65850836 65850971 -36022198 - MLT1K LTR MaLR 0 588 443 180 0 0 0 chr13 65851057 65851077 -36022092 + (TC)n Simple_repeat Simple_repeat 1 20 0 2141 116 17 0 chr13 65851461 65851754 -36021415 + AluSx SINE Alu 1 298 -14 181 416 8 24 chr13 65851851 65851976 -36021193 + L2 LINE L2 3133 3255 -17 785 249 61 0 chr13 65852116 65852313 -36020856 - MER58A DNA MER1_type -11 213 5 25 31 0 0 chr13 65852626 65852658 -36020511 + AT_rich Low_complexity Low_complexity 1 32 0 755 274 124 4 chr13 65854886 65855112 -36018057 + MIR SINE MIR 4 256 -6 21 0 0 0 chr13 65855168 65855189 -36017980 + AT_rich Low_complexity Low_complexity 1 21 0 1936 141 7 7 chr13 65855328 65855618 -36017551 + AluSx SINE Alu 1 290 -22 266 367 80 11 chr13 65855950 65856214 -36016955 + HAL1b LINE L1 300 581 -767 618 140 0 47 chr13 65856407 65856619 -36016550 + AluSx SINE Alu 1 221 -89 225 0 0 0 chr13 65856619 65856644 -36016525 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 741 90 0 0 chr13 65856643 65856754 -36016415 + (TA)n Simple_repeat Simple_repeat 1 111 0 618 140 0 47 chr13 65856644 65856775 -36016394 + AluSx SINE Alu 221 298 -12 29 28 0 0 chr13 65857074 65857110 -36016059 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr13 65857672 65857702 -36015467 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 29 0 0 chr13 65858190 65858224 -36014945 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 65858254 65858275 -36014894 + AT_rich Low_complexity Low_complexity 1 21 0 278 278 216 10 chr13 65859105 65859202 -36013967 - MIR SINE MIR -128 134 18 1536 163 34 58 chr13 65859626 65859746 -36013423 - L1MA8 LINE L1 -3 6288 6167 2488 86 0 10 chr13 65859746 65860060 -36013109 - AluY SINE Alu 0 311 1 1536 163 34 58 chr13 65860060 65860165 -36013004 - L1MA8 LINE L1 -124 6167 6061 1740 135 57 83 chr13 65860165 65860550 -36012619 - THE1C LTR MaLR 0 375 1 1536 163 34 58 chr13 65860550 65860734 -36012435 - L1MA8 LINE L1 -230 6061 5888 206 319 53 26 chr13 65860803 65860916 -36012253 + L2 LINE L2 3175 3290 -23 4238 142 32 8 chr13 65860977 65861611 -36011558 + Tigger1 DNA MER2_type 28 684 -1734 1436 170 0 0 chr13 65861611 65861846 -36011323 + MER46A DNA MER2_type 2 236 0 4238 142 32 8 chr13 65861846 65861966 -36011203 + Tigger1 DNA MER2_type 684 800 -1618 2241 110 17 0 chr13 65861947 65862292 -36010877 + Tigger1 DNA MER2_type 893 1243 -1175 * 213 39 0 0 chr13 65862655 65862681 -36010488 + (T)n Simple_repeat Simple_repeat 1 26 0 318 244 23 0 chr13 65863580 65863666 -36009503 - Tigger1 DNA MER2_type 0 2418 2331 201 297 149 0 chr13 65863903 65863977 -36009192 - L2 LINE L2 0 3313 3229 261 0 0 0 chr13 65863988 65864017 -36009152 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 671 286 112 14 chr13 65864596 65864883 -36008286 - MLT1J LTR MaLR -174 337 23 12436 53 78 4 chr13 65864883 65866623 -36006546 + L1PA2 LINE L1 5 1872 -4274 16876 29 0 0 chr13 65866623 65869396 -36003773 + L1PA2 LINE L1 3377 6153 -2 198 380 50 0 chr13 65869493 65869593 -36003576 - L3 LINE CR1 -1003 574 470 2230 118 7 0 chr13 65869829 65870126 -36003043 + AluSq SINE Alu 1 299 -14 498 33 0 0 chr13 65870953 65871013 -36002156 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2114 110 7 3 chr13 65871152 65871451 -36001718 + AluSx SINE Alu 1 300 -12 226 339 101 9 chr13 65872006 65872115 -36001054 - L2 LINE L2 -5 3267 3149 1622 182 24 0 chr13 65872383 65872674 -36000495 + AluJb SINE Alu 1 298 -14 1544 223 43 43 chr13 65873734 65874210 -35998959 + L1ME1 LINE L1 5668 6146 -20 2091 141 87 27 chr13 65874210 65874614 -35998555 - MSTA LTR MaLR 0 428 1 1544 223 43 43 chr13 65874614 65874630 -35998539 + L1ME1 LINE L1 6145 6160 -6 236 318 68 40 chr13 65874638 65874786 -35998383 - MIR SINE MIR -46 216 65 2257 109 0 10 chr13 65875183 65875494 -35997675 - AluSg SINE Alu -2 308 1 558 314 81 76 chr13 65875737 65876096 -35997073 + L2 LINE L2 2447 2803 -469 2305 110 0 0 chr13 65876096 65876395 -35996774 - AluSg SINE Alu -11 299 1 558 314 81 76 chr13 65876395 65876850 -35996319 + L2 LINE L2 2803 3268 -4 288 77 0 0 chr13 65877421 65877460 -35995709 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 444 202 8 84 chr13 65878709 65878828 -35994341 - L2 LINE L2 -3 3310 3201 1618 148 76 0 chr13 65878842 65879133 -35994036 - AluSx SINE Alu 0 311 1 193 273 13 13 chr13 65879726 65879803 -35993366 - L2 LINE L2 -119 3194 3118 219 36 0 0 chr13 65879807 65879835 -35993334 + (TTTTTG)n Simple_repeat Simple_repeat 1 28 0 679 332 61 52 chr13 65880160 65880834 -35992335 + L2 LINE L2 2579 3255 -17 505 246 56 45 chr13 65881573 65881752 -35991417 + MIR SINE MIR 70 250 -12 2255 119 0 6 chr13 65882610 65882922 -35990247 - AluSq SINE Alu -3 310 1 1358 180 22 44 chr13 65883028 65883389 -35989780 - MLT1A1 LTR MaLR -14 376 2 191 310 80 35 chr13 65883390 65883503 -35989666 + L2 LINE L2 3181 3298 -15 2062 130 0 0 chr13 65884932 65885217 -35987952 + AluSx SINE Alu 6 290 -22 378 198 20 155 chr13 65885328 65885507 -35987662 - MER5B DNA MER1_type -21 157 15 651 230 67 52 chr13 65885533 65885803 -35987366 + MER5C DNA MER1_type 33 306 -18 210 136 0 0 chr13 65885807 65885851 -35987318 + (TC)n Simple_repeat Simple_repeat 2 45 0 294 73 0 0 chr13 65885853 65885894 -35987275 + (CA)n Simple_repeat Simple_repeat 1 41 0 304 198 11 11 chr13 65886001 65886092 -35987077 + A-rich Low_complexity Low_complexity 3 93 0 428 138 0 12 chr13 65886092 65886172 -35986997 + (GGGA)n Simple_repeat Simple_repeat 3 81 0 389 341 37 24 chr13 65886369 65886533 -35986636 + MIR3 SINE MIR 5 170 -38 34 24 0 0 chr13 65886828 65886869 -35986300 + AT_rich Low_complexity Low_complexity 1 41 0 2282 110 3 0 chr13 65886953 65887254 -35985915 + AluSp SINE Alu 1 302 -11 2312 99 0 7 chr13 65887599 65887902 -35985267 - AluSq SINE Alu -12 301 1 2075 184 151 114 chr13 65887908 65888252 -35984917 + L1MD3 LINE L1 6722 7052 -943 326 194 20 92 chr13 65888252 65888350 -35984819 + MLT1F1 LTR MaLR 35 125 -442 2075 184 151 114 chr13 65888350 65888458 -35984711 + L1MD3 LINE L1 7052 7155 -840 1580 159 84 26 chr13 65888458 65888803 -35984366 - MLT1A1 LTR MaLR 0 365 1 2075 184 151 114 chr13 65888803 65888951 -35984218 + L1MD3 LINE L1 7155 7296 -699 2232 112 0 3 chr13 65888951 65889246 -35983923 + AluSx SINE Alu 2 295 -17 2075 184 151 114 chr13 65889246 65889566 -35983603 + L1MD3 LINE L1 7296 7991 -4 310 175 35 0 chr13 65890108 65890251 -35982918 + (TA)n Simple_repeat Simple_repeat 1 148 0 215 333 0 0 chr13 65890301 65890355 -35982814 + MIR SINE MIR 48 101 -161 21 0 0 0 chr13 65890355 65890376 -35982793 + AT_rich Low_complexity Low_complexity 1 21 0 2583 65 0 0 chr13 65890795 65891102 -35982067 - AluY SINE Alu -4 307 1 249 277 209 7 chr13 65891684 65891832 -35981337 + MIR SINE MIR 51 228 -34 2264 98 0 35 chr13 65892118 65892435 -35980734 + AluSx SINE Alu 1 306 -6 320 256 47 0 chr13 65892438 65892524 -35980645 + L1MC4 LINE L1 6614 6703 -1339 716 188 23 118 chr13 65892908 65893114 -35980055 + MER39 LTR ERV1 408 577 -130 2324 97 7 3 chr13 65893114 65893422 -35979747 + AluSq SINE Alu 1 309 -4 716 188 23 118 chr13 65893422 65893519 -35979650 + MER39 LTR ERV1 577 682 -25 318 308 65 9 chr13 65893577 65893684 -35979485 + L2 LINE L2 3160 3272 0 244 302 8 62 chr13 65893699 65893828 -35979341 - L2 LINE L2 -18 3295 3174 287 341 70 40 chr13 65893907 65894183 -35978986 - L2 LINE L2 -273 2999 2713 * 643 299 62 13 chr13 65894168 65894392 -35978777 + MIR SINE MIR 21 255 -7 249 211 0 0 chr13 65894396 65894453 -35978716 + (CA)n Simple_repeat Simple_repeat 2 58 0 523 316 101 53 chr13 65894466 65895090 -35978079 - L2 LINE L2 -575 2739 2086 403 353 127 50 chr13 65895732 65896272 -35976897 - L2 LINE L2 -88 3184 2596 1579 91 5 5 chr13 65896277 65896486 -35976683 + AluSq SINE Alu 1 209 -104 3705 47 0 2 chr13 65896486 65896935 -35976234 + LTR7 LTR ERV1 1 448 -2 6192 105 5 5 chr13 65896937 65897901 -35975268 + HERVH LTR ERV1 1 964 -6749 601 116 0 27 chr13 65897901 65898013 -35975156 + HERVH LTR ERV1 868 976 -6737 3117 142 5 37 chr13 65898128 65898755 -35974414 + HERVH LTR ERV1 2389 2995 -4718 911 122 7 0 chr13 65898734 65898882 -35974287 + HERVH LTR ERV1 3140 3288 -4425 * 7808 129 5 7 chr13 65898874 65900599 -35972570 + HERVH LTR ERV1 3492 5149 -2287 1248 137 38 0 chr13 65900600 65900812 -35972357 + HERVH LTR ERV1 5600 5819 -1894 2410 77 45 13 chr13 65900812 65901190 -35971979 + HERVH LTR ERV1 7324 7713 0 3597 51 2 2 chr13 65901190 65901638 -35971531 + LTR7 LTR ERV1 1 448 -2 589 163 0 0 chr13 65901638 65901736 -35971433 + AluSq SINE Alu 203 300 -13 1536 160 141 3 chr13 65901994 65902300 -35970869 - MER7A DNA MER2_type 0 346 1 2382 109 0 0 chr13 65902777 65903088 -35970081 - AluSx SINE Alu -1 311 1 318 289 26 9 chr13 65903589 65903703 -35969466 + L1ME LINE L1 5725 5840 -281 5761 62 50 3 chr13 65903725 65904470 -35968699 + LTR17 LTR ERV1 1 780 0 368 363 19 42 chr13 65904618 65904877 -35968292 + MIR SINE MIR 1 253 -9 938 266 37 0 chr13 65905098 65905339 -35967830 + MIR SINE MIR 13 262 0 2054 131 0 0 chr13 65905480 65905762 -35967407 - AluSg SINE Alu 0 310 29 275 232 0 0 chr13 65905877 65905946 -35967223 + MLT1I LTR MaLR 341 409 0 2297 100 0 3 chr13 65906476 65906777 -35966392 + AluY SINE Alu 1 300 -11 361 240 35 116 chr13 65907378 65907636 -35965533 + L2 LINE L2 2826 3062 -210 523 184 32 19 chr13 65907837 65908102 -35965067 + GA-rich Low_complexity Low_complexity 1 268 0 28 0 0 0 chr13 65908334 65908362 -35964807 + AT_rich Low_complexity Low_complexity 1 28 0 1528 176 3 83 chr13 65909581 65909786 -35963383 - AluJo SINE Alu -10 302 131 2124 119 10 0 chr13 65909786 65910089 -35963080 + AluSx SINE Alu 1 306 -6 1528 176 3 83 chr13 65910089 65910207 -35962962 - AluJo SINE Alu -181 131 5 364 358 4 41 chr13 65910971 65911214 -35961955 + L2 LINE L2 2641 2874 -440 322 309 65 74 chr13 65911248 65911478 -35961691 - MIR SINE MIR 0 262 35 697 226 0 0 chr13 65913178 65913311 -35959858 + FLAM_A SINE Alu 1 133 0 1013 104 0 8 chr13 65913402 65913536 -35959633 - AluSq/x SINE Alu -180 133 1 279 146 36 0 chr13 65914770 65914825 -35958344 + MER81 DNA DNA 55 111 -3 2049 151 0 0 chr13 65914986 65915284 -35957885 - AluSg SINE Alu -12 298 1 2031 147 0 10 chr13 65916433 65916747 -35956422 + AluSx SINE Alu 1 311 -1 27 29 0 0 chr13 65916773 65916807 -35956362 + AT_rich Low_complexity Low_complexity 1 34 0 189 276 35 17 chr13 65917508 65917566 -35955603 - L3 LINE CR1 -3 1574 1516 367 278 112 77 chr13 65917589 65917848 -35955321 - L2 LINE L2 -1 3312 3045 1021 269 67 29 chr13 65917848 65918298 -35954871 - MLT1C LTR MaLR 0 467 1 959 301 78 76 chr13 65918298 65918382 -35954787 - L2 LINE L2 -264 3049 2967 2124 101 10 0 chr13 65918382 65918695 -35954474 + AluSp SINE Alu 3 318 0 959 301 78 76 chr13 65918695 65919047 -35954122 - L2 LINE L2 -346 2967 2617 2160 106 0 10 chr13 65919047 65919361 -35953808 + AluSc SINE Alu 1 309 0 959 301 78 76 chr13 65919361 65919381 -35953788 - L2 LINE L2 -696 2617 2599 2220 86 4 0 chr13 65919381 65919693 -35953476 + AluSg SINE Alu 1 313 0 959 301 78 76 chr13 65919693 65919840 -35953329 - L2 LINE L2 -714 2599 2454 2509 81 0 0 chr13 65919840 65920150 -35953019 + AluSq SINE Alu 1 310 -3 959 301 78 76 chr13 65920150 65920364 -35952805 - L2 LINE L2 -859 2454 2226 2112 145 0 0 chr13 65920759 65921069 -35952100 - AluSx SINE Alu -1 311 2 228 261 17 34 chr13 65921074 65921089 -35952080 + (TA)n Simple_repeat Simple_repeat 2 16 -102 2132 86 10 14 chr13 65921089 65921380 -35951789 - AluSp SINE Alu -23 290 1 228 261 17 34 chr13 65921380 65921483 -35951686 + (TA)n Simple_repeat Simple_repeat 16 118 0 2197 124 0 0 chr13 65921762 65922068 -35951101 + AluSq SINE Alu 1 306 -7 399 252 86 29 chr13 65922503 65922642 -35950527 + MIR SINE MIR 28 174 -88 26 50 0 0 chr13 65923003 65923043 -35950126 + AT_rich Low_complexity Low_complexity 1 40 0 1264 123 0 11 chr13 65924926 65925113 -35948056 - AluSc SINE Alu 0 309 125 1956 145 15 55 chr13 65925206 65925390 -35947779 + L1MA9 LINE L1 5924 6114 -198 1787 176 3 3 chr13 65925390 65925692 -35947477 + AluJb SINE Alu 1 302 -10 1956 145 15 55 chr13 65925692 65925908 -35947261 + L1MA9 LINE L1 6114 6308 -4 300 53 0 0 chr13 65926424 65926462 -35946707 + (TG)n Simple_repeat Simple_repeat 2 39 0 231 103 0 0 chr13 65926996 65927035 -35946134 + (TG)n Simple_repeat Simple_repeat 2 40 0 2356 108 0 0 chr13 65928268 65928575 -35944594 - AluSc SINE Alu -2 307 1 2149 100 13 20 chr13 65929129 65929430 -35943739 - AluSq SINE Alu -11 302 4 264 367 94 0 chr13 65929956 65930084 -35943085 + MIR SINE MIR 48 187 -75 2181 107 30 0 chr13 65930950 65931250 -35941919 - AluSx SINE Alu -3 309 1 634 298 14 29 chr13 65931255 65931463 -35941706 - MIR SINE MIR -55 207 3 5364 114 0 21 chr13 65931493 65932392 -35940777 - L1PA13 LINE L1 -19 6144 5208 347 223 105 67 chr13 65932540 65932778 -35940391 + HAL1 LINE L1 1045 1291 -1216 240 327 63 34 chr13 65932812 65933191 -35939978 + HAL1 LINE L1 1256 1645 -862 1284 156 0 36 chr13 65933290 65933515 -35939654 + AluJb SINE Alu 88 304 -8 221 336 29 19 chr13 65933723 65933827 -35939342 + MIR SINE MIR 52 156 -106 2274 110 0 10 chr13 65934240 65934548 -35938621 - AluSx SINE Alu -7 305 1 1891 201 34 12 chr13 65934996 65935413 -35937756 - MLT1D LTR MaLR -13 492 67 1637 177 86 70 chr13 65935417 65935729 -35937440 + MER39 LTR ERV1 6 312 -395 2018 125 0 0 chr13 65935729 65936008 -35937161 - AluSq SINE Alu -1 312 34 1637 177 86 70 chr13 65936008 65936099 -35937070 + MER39 LTR ERV1 312 400 -307 1948 100 54 0 chr13 65936099 65936359 -35936810 - AluSx SINE Alu -18 294 21 1637 177 86 70 chr13 65936359 65936491 -35936678 + MER39 LTR ERV1 400 707 0 269 275 0 14 chr13 65936493 65936562 -35936607 - MLT1D LTR MaLR -437 68 1 448 138 12 0 chr13 65937135 65937215 -35935954 - AluSx SINE Alu -2 308 228 1317 98 11 5 chr13 65937215 65937399 -35935770 - AluSx SINE Alu -126 186 2 338 294 83 0 chr13 65937441 65937550 -35935619 + MIR SINE MIR 53 170 -92 242 328 15 0 chr13 65938170 65938237 -35934932 - L3 LINE CR1 -1 1576 1509 2422 71 0 10 chr13 65938273 65938581 -35934588 - AluSc SINE Alu -4 305 1 9053 211 47 19 chr13 65938746 65941009 -35932160 + Cheshire DNA MER1_type 3 2327 -93 940 192 40 0 chr13 65941018 65941216 -35931953 + MER2 DNA MER2_type 7 212 -133 * 1131 160 80 17 chr13 65941199 65941436 -35931733 - MSTB1 LTR MaLR -5 427 176 23 78 0 0 chr13 65941597 65941648 -35931521 + AT_rich Low_complexity Low_complexity 1 51 0 279 293 176 8 chr13 65942864 65943022 -35930147 - MIR SINE MIR -61 147 9 1794 185 7 0 chr13 65943342 65943639 -35929530 + AluJo SINE Alu 1 299 -13 203 171 98 0 chr13 65943843 65943884 -35929285 - L2 LINE L2 -18 3295 3251 2107 98 21 0 chr13 65943998 65944283 -35928886 + AluY SINE Alu 1 291 -20 302 167 0 15 chr13 65944454 65944520 -35928649 + (TG)n Simple_repeat Simple_repeat 2 66 0 2389 91 0 0 chr13 65944759 65945066 -35928103 + AluSc SINE Alu 1 307 -2 649 169 48 0 chr13 65945173 65945297 -35927872 - FLAM_A SINE Alu -3 139 10 3597 130 2 9 chr13 65945830 65946361 -35926808 - MER1A DNA MER1_type 0 527 1 21 0 0 0 chr13 65946369 65946390 -35926779 + AT_rich Low_complexity Low_complexity 1 21 0 386 333 26 13 chr13 65949112 65949268 -35923901 + MIR SINE MIR 21 178 -84 2145 108 7 0 chr13 65949398 65949693 -35923476 + AluSq SINE Alu 1 297 -16 375 217 44 24 chr13 65949693 65949819 -35923350 - L1MC4 LINE L1 -1341 6981 1992 1763 143 12 64 chr13 65950187 65950516 -35922653 - AluSx SINE Alu 0 312 1 2301 112 0 3 chr13 65950527 65950939 -35922230 - AluSq SINE Alu 0 411 1 777 299 141 23 chr13 65951102 65951534 -35921635 - LTR33 LTR ERVL -2 519 37 677 294 40 32 chr13 65951895 65952143 -35921026 + MIR SINE MIR 13 262 0 278 381 7 19 chr13 65952324 65952479 -35920690 - L2 LINE L2 -224 3048 2896 1277 88 41 6 chr13 65952510 65952680 -35920489 - AluSg/x SINE Alu -14 298 123 907 148 6 11 chr13 65952681 65952864 -35920305 + L1MA4 LINE L1 6113 6294 -6 303 260 123 34 chr13 65952944 65953090 -35920079 + L1ME4a LINE L1 5798 5956 -165 298 238 48 0 chr13 65953174 65953237 -35919932 + Tigger3b DNA MER2_type 1 66 -1165 2485 169 50 0 chr13 65953237 65953699 -35919470 - MER52A LTR ERV1 0 1755 1271 5861 123 36 39 chr13 65953704 65953750 -35919419 + Tigger3b DNA MER2_type 108 153 -2875 2393 70 7 0 chr13 65953750 65954049 -35919120 + AluY SINE Alu 1 301 -10 5861 123 36 39 chr13 65954049 65954186 -35918983 + Tigger3b DNA MER2_type 153 289 -2739 2259 88 7 0 chr13 65954186 65954505 -35918664 - AluSp SINE Alu 0 321 1 5861 123 36 39 chr13 65954505 65955445 -35917724 + Tigger3b DNA MER2_type 289 1231 0 218 430 42 14 chr13 65956315 65956529 -35916640 - L2 LINE L2 -215 3057 2838 201 302 153 64 chr13 65956898 65957193 -35915976 + L2 LINE L2 2214 2534 -780 349 375 111 0 chr13 65958015 65958083 -35915086 - MIR SINE MIR 0 262 203 1748 143 69 37 chr13 65958083 65958264 -35914905 - MER46B DNA MER2_type -2496 235 161 2259 94 0 7 chr13 65958264 65958561 -35914608 - AluSc SINE Alu -14 295 1 1748 143 69 37 chr13 65958561 65958728 -35914441 - MER46B DNA MER2_type -2570 161 1 349 375 111 0 chr13 65958728 65958894 -35914275 - MIR SINE MIR -59 203 2 2594 52 0 3 chr13 65959113 65959423 -35913746 - AluY SINE Alu -2 309 1 185 382 23 30 chr13 65959653 65959784 -35913385 + L2 LINE L2 3143 3272 0 212 163 0 0 chr13 65960406 65960449 -35912720 + A-rich Low_complexity Low_complexity 1 43 0 1360 270 75 38 chr13 65960665 65960864 -35912305 + MLT1F LTR MaLR 1 191 -351 411 21 0 0 chr13 65960864 65960912 -35912257 + (CA)n Simple_repeat Simple_repeat 1 48 0 1360 270 75 38 chr13 65960912 65961208 -35911961 + MLT1F LTR MaLR 191 514 -28 2269 104 3 0 chr13 65961214 65961513 -35911656 - AluSq SINE Alu -13 300 1 23 0 0 0 chr13 65961841 65961864 -35911305 + AT_rich Low_complexity Low_complexity 1 23 0 2381 56 0 3 chr13 65964279 65964594 -35908575 - AluY SINE Alu 0 314 1 2206 109 3 0 chr13 65964597 65964902 -35908267 - AluSq SINE Alu 0 306 1 234 0 0 0 chr13 65964955 65964981 -35908188 + (TC)n Simple_repeat Simple_repeat 2 27 0 212 123 55 0 chr13 65964981 65965054 -35908115 + (TA)n Simple_repeat Simple_repeat 1 77 0 33 56 0 0 chr13 65965306 65965360 -35907809 + AT_rich Low_complexity Low_complexity 1 54 0 183 238 24 0 chr13 65965389 65965431 -35907738 - MIR SINE MIR -77 185 143 485 264 168 47 chr13 65965453 65965816 -35907353 + MLT1I LTR MaLR 3 409 0 2678 30 10 0 chr13 65966517 65966936 -35906233 - L1PA5 LINE L1 -554 5600 5178 4456 48 2 0 chr13 65966936 65967481 -35905688 + L1PA5 LINE L1 5605 6152 -2 1530 267 109 22 chr13 65967951 65968531 -35904638 + L2 LINE L2 2002 2631 -683 338 323 20 0 chr13 65968543 65968642 -35904527 + MER5A DNA MER1_type 11 111 -78 562 319 17 22 chr13 65968695 65968927 -35904242 + L2 LINE L2 2626 2856 -458 338 244 83 58 chr13 65969184 65969389 -35903780 + L1MC5 LINE L1 7701 7910 -51 30 45 0 0 chr13 65969397 65969441 -35903728 + AT_rich Low_complexity Low_complexity 1 44 0 2364 84 3 0 chr13 65969529 65969827 -35903342 - AluSp SINE Alu -14 299 1 1878 182 0 3 chr13 65969827 65970124 -35903045 - AluJb SINE Alu -16 296 1 2206 97 0 0 chr13 65970246 65970558 -35902611 + AluSg SINE Alu 1 312 0 2617 141 26 7 chr13 65970628 65971047 -35902122 - MSTA LTR MaLR -1 427 1 261 273 0 0 chr13 65971167 65971222 -35901947 + L2 LINE L2 3255 3309 -4 671 307 36 14 chr13 65971404 65971684 -35901485 - LTR16A LTR ERVL 0 450 165 266 152 0 0 chr13 65971840 65971886 -35901283 - L1PA16 LINE L1 -10 6156 6111 1854 185 3 0 chr13 65972138 65972435 -35900734 - AluJb SINE Alu -9 303 6 429 132 116 58 chr13 65972439 65972560 -35900609 - L1MB4 LINE L1 -209 5971 5844 1679 195 14 0 chr13 65972731 65972886 -35900283 - AluJb SINE Alu -21 291 129 246 32 0 0 chr13 65972886 65972917 -35900252 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1679 195 14 0 chr13 65972917 65973048 -35900121 - AluJb SINE Alu -183 129 1 9316 175 149 7 chr13 65973320 65975654 -35897515 - L1PBa LINE L1 -4192 2671 6 3730 107 41 63 chr13 65975671 65976355 -35896814 - THE1C-int LTR MaLR -911 669 1 1383 184 49 80 chr13 65976355 65976742 -35896427 - THE1C LTR MaLR 0 375 1 309 26 0 0 chr13 65976782 65976820 -35896349 + (TG)n Simple_repeat Simple_repeat 2 39 0 822 173 0 0 chr13 65977107 65977240 -35895929 + FLAM_C SINE Alu 1 133 0 333 214 0 12 chr13 65977289 65977373 -35895796 + L1PB4 LINE L1 6063 6145 -11 271 266 12 41 chr13 65978271 65978446 -35894723 - L1MB4 LINE L1 -459 5662 5597 195 162 0 0 chr13 65978513 65978550 -35894619 + T-rich Low_complexity Low_complexity 4 40 0 284 306 44 19 chr13 65978568 65978774 -35894395 - L1MB4 LINE L1 -623 5543 5333 2214 84 14 3 chr13 65978820 65979104 -35894065 - AluY SINE Alu -22 289 3 789 243 0 6 chr13 65979782 65979955 -35893214 - FRAM SINE Alu -7 169 1 1512 136 22 114 chr13 65979985 65980119 -35893050 + AluYb8 SINE Alu 3 148 -162 2191 108 3 0 chr13 65980119 65980406 -35892763 + AluSp SINE Alu 1 288 -25 1512 136 22 114 chr13 65980406 65980608 -35892561 + AluYb8 SINE Alu 148 310 0 2422 53 3 23 chr13 65980885 65981185 -35891984 + AluY SINE Alu 1 294 -17 706 202 0 8 chr13 65981254 65981383 -35891786 + FLAM_A SINE Alu 1 128 -5 775 258 52 58 chr13 65982698 65983110 -35890059 - L1MDa LINE L1 -4532 2008 1598 2143 104 0 36 chr13 65983110 65983418 -35889751 - AluY SINE Alu -14 297 1 775 258 52 58 chr13 65983418 65983502 -35889667 - L1MDa LINE L1 -4942 1598 1515 4543 232 32 41 chr13 65983564 65985027 -35888142 - L1MDa LINE L1 -2306 4234 2760 2011 132 10 7 chr13 65985027 65985323 -35887846 + AluSx SINE Alu 1 297 -15 4543 232 32 41 chr13 65985323 65985385 -35887784 - L1MDa LINE L1 -3780 2760 2699 710 193 7 37 chr13 65985385 65985520 -35887649 - FLAM_A SINE Alu -2 131 1 4543 232 32 41 chr13 65985520 65985630 -35887539 - L1MDa LINE L1 -3841 2699 2612 2154 118 3 0 chr13 65985630 65985919 -35887250 - AluSp SINE Alu -22 291 2 4543 232 32 41 chr13 65985919 65986044 -35887125 - L1MDa LINE L1 -3928 2612 2487 192 371 101 19 chr13 65986510 65986669 -35886500 - MIR3 SINE MIR -16 192 21 247 292 75 106 chr13 65988205 65988366 -35884803 - MIR SINE MIR -39 223 68 2145 201 48 8 chr13 65989314 65989792 -35883377 - L1MDa LINE L1 -5710 830 334 5037 117 96 22 chr13 65989942 65991376 -35881793 - pTR5 LTR ERV1 0 2438 743 1927 126 0 32 chr13 65991376 65991552 -35881617 + AluSx SINE Alu 31 196 -116 183 100 0 0 chr13 65991552 65991582 -35881587 + (TGGGGG)n Simple_repeat Simple_repeat 2 31 0 1927 126 0 32 chr13 65991582 65991690 -35881479 + AluSx SINE Alu 196 306 -6 2358 110 0 0 chr13 65991791 65992101 -35881068 + AluSq SINE Alu 1 310 -3 465 277 88 19 chr13 65992375 65992534 -35880635 - MIR SINE MIR -73 189 20 28 0 0 0 chr13 65992560 65992588 -35880581 + AT_rich Low_complexity Low_complexity 1 28 0 424 187 0 0 chr13 65992588 65992663 -35880506 - AluSg/x SINE Alu -22 288 214 1076 157 20 10 chr13 65992755 65992959 -35880210 - Tigger7 DNA MER2_type 0 2487 2282 * 5048 142 18 5 chr13 65992945 65993776 -35879393 - Tigger7 DNA MER2_type -1645 842 1 1635 237 97 13 chr13 65993776 65994324 -35878845 - L1MC4 LINE L1 -211 7831 7238 1390 242 135 16 chr13 65994325 65994388 -35878781 - L1MC4 LINE L1 -954 7088 7034 2329 77 0 0 chr13 65994388 65994687 -35878482 + AluY SINE Alu 2 300 -11 1390 242 135 16 chr13 65994687 65995185 -35877984 - L1MC4 LINE L1 -1008 7034 6460 1701 51 0 32 chr13 65995232 65995425 -35877744 - AluY SINE Alu 0 311 138 2488 63 10 0 chr13 65995425 65995728 -35877441 - AluY SINE Alu -5 306 1 1701 51 0 32 chr13 65995728 65995773 -35877396 - AluY SINE Alu -173 138 93 1257 233 53 31 chr13 65996056 65996413 -35876756 + MLT1A1 LTR MaLR 1 365 0 180 111 0 0 chr13 65997194 65997221 -35875948 + (CA)n Simple_repeat Simple_repeat 2 28 0 2128 132 7 0 chr13 65997699 65997994 -35875175 + AluSq SINE Alu 1 297 -16 3368 249 25 56 chr13 65998009 65998316 -35874853 + L1M4c LINE L1 906 1221 -5161 2417 91 0 3 chr13 65998316 65998623 -35874546 + AluSp SINE Alu 1 306 -7 3368 249 25 56 chr13 65998623 65998693 -35874476 + L1M4c LINE L1 1221 1292 -5090 2297 90 0 3 chr13 65998693 65998983 -35874186 + AluY SINE Alu 1 289 -22 3368 249 25 56 chr13 65998983 66000081 -35873088 + L1M4c LINE L1 1292 2423 -3959 2066 159 0 0 chr13 66000081 66000390 -35872779 - AluJb SINE Alu -3 309 1 3368 249 25 56 chr13 66000390 66000439 -35872730 + L1M4c LINE L1 2423 2472 -3910 2043 125 14 7 chr13 66000439 66000736 -35872433 - AluSq SINE Alu -14 299 1 3368 249 25 56 chr13 66000736 66001937 -35871232 + L1M4c LINE L1 2472 3652 -2730 1646 199 3 23 chr13 66001937 66002243 -35870926 + AluJb SINE Alu 1 300 -12 3368 249 25 56 chr13 66002243 66002459 -35870710 + L1M4c LINE L1 3652 3873 -2509 4216 231 60 43 chr13 66002608 66003346 -35869823 + L1M4c LINE L1 3873 4597 -1785 761 158 0 8 chr13 66003346 66003466 -35869703 + FLAM_C SINE Alu 3 121 -12 4216 231 60 43 chr13 66003466 66003695 -35869474 + L1M4c LINE L1 4597 4821 -1561 2215 116 0 3 chr13 66003695 66003998 -35869171 + AluSx SINE Alu 1 302 -10 4216 231 60 43 chr13 66003998 66004673 -35868496 + L1M4c LINE L1 4821 5543 -839 383 245 110 25 chr13 66004735 66004898 -35868271 - MER21B LTR ERV1 -553 310 134 1096 97 0 0 chr13 66004905 66005049 -35868120 + AluSq/x SINE Alu 1 144 -169 2439 82 0 3 chr13 66005051 66005356 -35867813 + AluSg SINE Alu 1 304 -6 341 202 16 31 chr13 66005529 66005658 -35867511 + T-rich Low_complexity Low_complexity 2 128 0 2439 82 0 3 chr13 66005902 66006207 -35866962 - AluSg SINE Alu -6 304 1 1096 97 0 0 chr13 66006209 66006353 -35866816 - AluSq/x SINE Alu -169 144 1 383 245 110 25 chr13 66006360 66006523 -35866646 + MER21B LTR ERV1 134 310 -553 4252 233 61 42 chr13 66006585 66007255 -35865914 - L1M4c LINE L1 -839 5543 4888 2194 119 0 3 chr13 66007255 66007558 -35865611 - AluSx SINE Alu -10 302 1 4252 233 61 42 chr13 66007558 66007787 -35865382 - L1M4c LINE L1 -1494 4888 4665 761 158 0 8 chr13 66007787 66007907 -35865262 - FLAM_C SINE Alu -12 121 3 4252 233 61 42 chr13 66007907 66008645 -35864524 - L1M4c LINE L1 -1717 4665 3873 3368 259 28 46 chr13 66008794 66009010 -35864159 - L1M4c LINE L1 -2509 3873 3655 1646 199 3 23 chr13 66009010 66009316 -35863853 - AluJb SINE Alu -12 300 1 3368 259 28 46 chr13 66009316 66010517 -35862652 - L1M4c LINE L1 -2727 3655 2434 2043 125 14 7 chr13 66010517 66010814 -35862355 + AluSq SINE Alu 1 299 -14 3368 259 28 46 chr13 66010814 66010863 -35862306 - L1M4c LINE L1 -3948 2434 2386 2066 159 0 0 chr13 66010863 66011172 -35861997 + AluJb SINE Alu 1 309 -3 3368 259 28 46 chr13 66011172 66012267 -35860902 - L1M4c LINE L1 -3996 2386 1247 1851 144 3 3 chr13 66012270 66012555 -35860614 - AluY SINE Alu -22 289 5 1363 172 22 0 chr13 66012589 66012821 -35860348 - AluJo SINE Alu -75 237 1 1502 144 42 69 chr13 66012924 66013284 -35859885 + MER31A LTR ERV1 136 485 0 1105 206 154 16 chr13 66013325 66013578 -35859591 - AluJo SINE Alu -14 288 1 2220 110 0 13 chr13 66014061 66014391 -35858778 - AluSg SINE Alu 0 310 1 2010 122 6 39 chr13 66014518 66014830 -35858339 - AluSx SINE Alu -10 302 1 1878 120 7 4 chr13 66015313 66015588 -35857581 + AluSx SINE Alu 1 276 -36 219 188 0 0 chr13 66015601 66015649 -35857520 + G-rich Low_complexity Low_complexity 5 52 0 21 0 0 0 chr13 66015817 66015838 -35857331 + AT_rich Low_complexity Low_complexity 1 21 0 1079 146 42 0 chr13 66017003 66017168 -35856001 + AluJb SINE Alu 135 306 -6 1999 110 40 0 chr13 66017410 66017682 -35855487 - AluSq SINE Alu -30 283 1 695 186 18 0 chr13 66018022 66018135 -35855034 + FLAM_C SINE Alu 5 119 -24 201 162 0 0 chr13 66018138 66018175 -35854994 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 391 319 49 22 chr13 66018594 66018779 -35854390 + MIR SINE MIR 63 252 -10 256 301 86 0 chr13 66019064 66019157 -35854012 + L2 LINE L2 2257 2357 -957 1468 109 55 19 chr13 66019165 66019421 -35853748 + L1MA5 LINE L1 6035 6299 -1 1817 186 0 0 chr13 66020015 66020306 -35852863 - AluJb SINE Alu -21 291 1 2225 92 0 3 chr13 66020319 66020622 -35852547 - AluY SINE Alu -9 302 1 348 319 148 14 chr13 66020858 66021203 -35851966 - L1M4 LINE L1 -1457 4689 4299 1754 67 0 0 chr13 66021261 66021469 -35851700 - AluSg SINE Alu 0 312 105 2450 78 0 0 chr13 66021469 66021774 -35851395 - AluY SINE Alu 0 311 5 892 105 0 0 chr13 66021779 66021893 -35851276 - AluSg SINE Alu -196 114 1 872 308 126 19 chr13 66022186 66022560 -35850609 + L2 LINE L2 56 469 -2845 25 31 0 0 chr13 66022589 66022621 -35850548 + AT_rich Low_complexity Low_complexity 1 32 0 1657 163 10 23 chr13 66022832 66023133 -35850036 + AluSx SINE Alu 1 297 -15 393 216 0 0 chr13 66023133 66023221 -35849948 + (TA)n Simple_repeat Simple_repeat 1 88 0 2259 112 3 0 chr13 66023255 66023559 -35849610 - AluSp SINE Alu -8 305 1 232 381 57 9 chr13 66023993 66024098 -35849071 - L2 LINE L2 -23 3249 3140 2191 108 3 3 chr13 66024141 66024438 -35848731 + AluSg SINE Alu 1 297 -13 207 342 60 60 chr13 66024932 66025081 -35848088 - L2 LINE L2 -177 3095 2947 192 77 0 0 chr13 66025828 66025854 -35847315 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1632 179 55 57 chr13 66026691 66026970 -35846199 + Charlie1 DNA MER1_type 2078 2357 -404 2256 62 62 3 chr13 66026970 66027262 -35845907 - AluY SINE Alu -2 309 1 1632 179 55 57 chr13 66027262 66027506 -35845663 + Charlie1 DNA MER1_type 2357 2600 -161 1815 191 0 0 chr13 66027529 66027832 -35845337 - AluJb SINE Alu -9 303 1 32 43 0 0 chr13 66027837 66027883 -35845286 + AT_rich Low_complexity Low_complexity 1 46 0 229 253 74 0 chr13 66028007 66028102 -35845067 - Charlie7 DNA MER1_type -282 2330 2229 398 297 113 9 chr13 66028235 66028464 -35844705 - Charlie7 DNA MER1_type -2077 535 283 2154 103 4 0 chr13 66028466 66028747 -35844422 + AluSp SINE Alu 1 282 -31 645 157 0 0 chr13 66028751 66028866 -35844303 + GA-rich Low_complexity Low_complexity 3 117 0 1333 172 58 31 chr13 66029001 66029262 -35843907 + AluJb SINE Alu 35 302 -10 2347 98 3 0 chr13 66029271 66029586 -35843583 - AluSp SINE Alu 0 316 1 2138 105 3 17 chr13 66029765 66030060 -35843109 - AluSc SINE Alu -17 292 2 1863 143 27 7 chr13 66030146 66030439 -35842730 + AluSg1 SINE Alu 1 299 -10 455 311 104 37 chr13 66030773 66030937 -35842232 - MIR3 SINE MIR -26 182 8 2394 97 0 0 chr13 66031487 66031795 -35841374 + AluSx SINE Alu 1 308 -4 480 321 80 22 chr13 66032459 66032683 -35840486 - MIR SINE MIR -6 256 20 1676 186 16 16 chr13 66033212 66033523 -35839646 + AluJb SINE Alu 2 312 0 252 59 0 0 chr13 66035395 66035429 -35837740 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1817 143 15 4 chr13 66035432 66035704 -35837465 - AluSx SINE Alu -37 275 1 235 349 58 35 chr13 66035844 66036016 -35837153 + MIR SINE MIR 21 196 -66 1797 190 0 7 chr13 66036028 66036333 -35836836 + AluJo SINE Alu 1 303 -9 322 335 49 12 chr13 66036713 66036877 -35836292 - MIR SINE MIR -92 170 1 1487 85 0 71 chr13 66037099 66037323 -35835846 - AluSg/x SINE Alu -20 290 83 932 219 41 24 chr13 66037375 66037621 -35835548 + MLT2D LTR ERVL 1 250 -164 2019 143 17 0 chr13 66037622 66037922 -35835247 - AluSx SINE Alu -7 305 1 364 287 107 89 chr13 66038196 66038467 -35834702 - L2 LINE L2 0 3313 3026 1854 113 36 7 chr13 66038467 66038768 -35834401 - AluSx SINE Alu 0 310 2 364 287 107 89 chr13 66038768 66038990 -35834179 - L2 LINE L2 -287 3026 2810 749 114 0 61 chr13 66039207 66039338 -35833831 + AluSg/x SINE Alu 176 298 -12 22 0 0 0 chr13 66039338 66039360 -35833809 + AT_rich Low_complexity Low_complexity 1 22 0 2112 122 0 20 chr13 66039394 66039698 -35833471 - AluSq SINE Alu -15 298 1 306 0 0 0 chr13 66039718 66039752 -35833417 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1223 136 104 36 chr13 66039752 66039972 -35833197 - AluSx SINE Alu -68 244 10 569 256 16 7 chr13 66040192 66040494 -35832675 - HsTC2c DNA Tc2 -2 727 322 31 44 0 0 chr13 66040550 66040595 -35832574 + AT_rich Low_complexity Low_complexity 1 45 0 2168 111 3 0 chr13 66040595 66040884 -35832285 - AluSq SINE Alu -23 290 1 596 100 0 0 chr13 66041035 66041115 -35832054 - AluS SINE Alu -233 80 1 2245 83 14 3 chr13 66041153 66041441 -35831728 + AluSg SINE Alu 1 291 -19 660 209 65 51 chr13 66041445 66041660 -35831509 - HsTC2c DNA Tc2 -501 228 11 2381 75 0 0 chr13 66041769 66042061 -35831108 - AluSc SINE Alu -17 292 1 338 264 66 0 chr13 66042393 66042499 -35830670 - MIR SINE MIR -67 195 83 901 196 93 129 chr13 66042579 66042796 -35830373 + MSTB2 LTR MaLR 1 224 -233 2008 156 0 0 chr13 66042796 66043104 -35830065 + AluSx SINE Alu 1 308 -4 901 196 93 129 chr13 66043104 66043306 -35829863 + MSTB2 LTR MaLR 224 404 -53 2087 106 35 0 chr13 66043306 66043590 -35829579 - AluSx SINE Alu -18 294 1 901 196 93 129 chr13 66043590 66043643 -35829526 + MSTB2 LTR MaLR 404 457 0 2298 98 3 3 chr13 66043955 66044250 -35828919 + AluSg SINE Alu 3 297 -13 535 148 0 28 chr13 66044331 66044439 -35828730 + AluY SINE Alu 205 309 -2 862 129 0 45 chr13 66044544 66044676 -35828493 - FLAM_C SINE Alu -17 126 1 2107 104 11 4 chr13 66044779 66045101 -35828068 + AluSc SINE Alu 1 324 0 2321 99 0 7 chr13 66045101 66045405 -35827764 + AluY SINE Alu 1 302 -9 352 231 67 10 chr13 66045487 66045591 -35827578 + HAL1b LINE L1 978 1087 -261 458 314 85 14 chr13 66045922 66046145 -35827024 - MIR SINE MIR -13 249 11 2179 89 45 0 chr13 66046195 66046487 -35826682 - AluSq SINE Alu -8 305 1 421 243 0 36 chr13 66046685 66046796 -35826373 - FLAM_A SINE Alu -1 141 35 564 206 89 106 chr13 66046947 66046991 -35826178 - AluJo SINE Alu -135 177 134 2525 68 13 0 chr13 66046991 66047299 -35825870 - AluSp SINE Alu -1 312 1 564 206 89 106 chr13 66047299 66047434 -35825735 - AluJo SINE Alu -178 134 1 1080 161 5 19 chr13 66047438 66047643 -35825526 - MER20 DNA MER1_type 0 219 18 2327 91 10 0 chr13 66047672 66047970 -35825199 - AluSg SINE Alu -9 301 1 216 0 0 0 chr13 66048627 66048651 -35824518 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1694 113 61 53 chr13 66048654 66048930 -35824239 - AluSg SINE Alu -34 276 1 2285 106 3 0 chr13 66049616 66049918 -35823251 + AluSp SINE Alu 1 303 -10 1685 149 0 11 chr13 66051905 66052173 -35820996 + AluSx SINE Alu 45 309 -3 2133 125 0 16 chr13 66052175 66052486 -35820683 + AluSx SINE Alu 2 307 -5 2117 139 10 0 chr13 66052636 66052938 -35820231 - AluSx SINE Alu -5 307 3 2624 27 0 3 chr13 66053100 66053401 -35819768 + AluY SINE Alu 1 300 -11 343 319 124 12 chr13 66053426 66053595 -35819574 - MER5A DNA MER1_type 0 189 2 29 60 0 0 chr13 66055106 66055156 -35818013 + AT_rich Low_complexity Low_complexity 1 50 0 23 55 0 18 chr13 66060021 66060036 -35813133 + GC_rich Low_complexity Low_complexity 1 15 -39 180 0 0 0 chr13 66060036 66060056 -35813113 + (CCGGG)n Simple_repeat Simple_repeat 2 21 0 23 55 0 18 chr13 66060056 66060095 -35813074 + GC_rich Low_complexity Low_complexity 15 54 0 300 53 0 0 chr13 66060190 66060228 -35812941 + (GGA)n Simple_repeat Simple_repeat 1 38 0 26 93 0 0 chr13 66060476 66060551 -35812618 + GC_rich Low_complexity Low_complexity 1 75 0 257 226 16 0 chr13 66060814 66060876 -35812293 + G-rich Low_complexity Low_complexity 2 64 0 24 0 0 0 chr13 66062045 66062069 -35811100 + GC_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr13 66062950 66062975 -35810194 + (CA)n Simple_repeat Simple_repeat 2 26 0 2221 113 0 13 chr13 66063109 66063418 -35809751 - AluSq SINE Alu -8 305 1 186 43 0 0 chr13 66065294 66065317 -35807852 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1701 171 10 23 chr13 66065331 66065640 -35807529 - AluJb SINE Alu -7 305 1 2412 88 0 0 chr13 66065746 66066051 -35807118 + AluSp SINE Alu 1 305 -8 2039 128 3 29 chr13 66066228 66066534 -35806635 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 66066735 66066756 -35806413 + AT_rich Low_complexity Low_complexity 1 21 0 2178 127 10 0 chr13 66067004 66067311 -35805858 + AluSx SINE Alu 3 312 0 214 288 36 131 chr13 66067474 66067748 -35805421 + L2 LINE L2 2708 2955 -359 1056 194 9 26 chr13 66067803 66068035 -35805134 - AluJo SINE Alu -3 309 82 534 325 66 55 chr13 66068035 66068306 -35804863 + L2 LINE L2 2999 3272 0 2653 46 3 0 chr13 66068307 66068614 -35804555 + AluY SINE Alu 1 308 -3 287 116 0 15 chr13 66069390 66069440 -35803729 + Alu SINE Alu 1 38 -264 7599 55 15 0 chr13 66069688 66070981 -35802188 - L1PA8 LINE L1 -4 6168 4865 576 285 87 33 chr13 66071623 66072053 -35801116 - L1ME LINE L1 -394 5727 5273 1860 128 11 3 chr13 66072330 66072638 -35800531 + AluSx SINE Alu 1 310 0 253 250 86 26 chr13 66072639 66072755 -35800414 - L1ME LINE L1 -652 5469 5347 281 183 141 0 chr13 66072927 66072998 -35800171 + MER53 DNA DNA 3 83 -106 180 107 18 54 chr13 66073031 66073087 -35800082 + (TATTG)n Simple_repeat Simple_repeat 2 55 0 2430 80 7 0 chr13 66073248 66073550 -35799619 + AluSp SINE Alu 2 305 -8 347 279 27 18 chr13 66073757 66073868 -35799301 - MER5B DNA MER1_type -1 177 66 503 294 18 6 chr13 66073873 66074036 -35799133 + MIR SINE MIR 97 261 -1 432 224 112 0 chr13 66074127 66074225 -35798944 - MER63A DNA MER1_type -2 208 100 1052 157 0 0 chr13 66074226 66074379 -35798790 + AluSq SINE Alu 2 154 -159 4078 122 111 134 chr13 66074379 66075773 -35797396 + pTR5 LTR ERV1 747 2432 -6 1255 131 0 0 chr13 66075773 66075948 -35797221 + AluSg/x SINE Alu 138 312 0 270 299 72 0 chr13 66075953 66076050 -35797119 - MER63A DNA MER1_type 0 112 9 231 36 0 0 chr13 66076409 66076437 -35796732 + (TA)n Simple_repeat Simple_repeat 1 28 0 2395 57 0 0 chr13 66076685 66076993 -35796176 - AluY SINE Alu 0 308 1 2273 88 3 0 chr13 66077309 66077637 -35795532 - AluSp SINE Alu 0 329 1 186 43 0 0 chr13 66079251 66079274 -35793895 + (A)n Simple_repeat Simple_repeat 1 23 0 444 259 30 15 chr13 66081178 66081313 -35791856 + MIR3 SINE MIR 10 146 -62 1310 97 0 11 chr13 66082075 66082251 -35790918 - AluSp SINE Alu -3 310 137 255 333 0 0 chr13 66082663 66082762 -35790407 + (TA)n Simple_repeat Simple_repeat 2 100 0 1596 169 25 37 chr13 66084446 66084771 -35788398 - MER39 LTR ERV1 0 707 387 5175 117 41 68 chr13 66084775 66085081 -35788088 - MER4D LTR ERV1 0 903 590 1901 159 0 0 chr13 66085081 66085388 -35787781 + AluJb SINE Alu 1 307 0 5175 117 41 68 chr13 66085388 66085810 -35787359 - MER4D LTR ERV1 -313 590 201 2201 100 11 0 chr13 66085810 66086122 -35787047 - AluSx SINE Alu 0 315 1 5175 117 41 68 chr13 66086122 66086311 -35786858 - MER4D LTR ERV1 -702 201 8 846 170 212 26 chr13 66086317 66086573 -35786596 - MER39B LTR ERV1 -389 264 1 625 209 13 63 chr13 66086624 66086782 -35786387 - MER39B-int LTR ERV1 -144 6187 6038 1724 58 0 5 chr13 66087503 66087710 -35785459 - AluSp SINE Alu -7 306 101 440 115 35 0 chr13 66087822 66087935 -35785234 + (TA)n Simple_repeat Simple_repeat 1 117 0 858 197 0 7 chr13 66088103 66088255 -35784914 - AluSc SINE Alu -40 269 119 866 47 0 19 chr13 66088364 66088470 -35784699 - U6 snRNA snRNA -1 106 3 1191 52 0 0 chr13 66088471 66088607 -35784562 - AluSq/x SINE Alu -176 137 2 1960 114 6 54 chr13 66088607 66088922 -35784247 - AluSc SINE Alu -9 300 1 1658 178 0 10 chr13 66089320 66089612 -35783557 + AluJo SINE Alu 1 289 -23 331 150 363 0 chr13 66089629 66089709 -35783460 + MER33 DNA MER1_type 12 120 -204 1030 154 0 6 chr13 66089721 66089877 -35783292 + FRAM SINE Alu 11 165 -11 762 168 109 40 chr13 66089877 66090079 -35783090 + MER33 DNA MER1_type 147 362 -1 487 313 138 5 chr13 66091495 66091690 -35781479 - MIR SINE MIR -1 261 41 180 0 0 0 chr13 66091846 66091866 -35781303 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1543 178 3 51 chr13 66091895 66092209 -35780960 - AluJo SINE Alu -13 299 1 21 71 0 0 chr13 66092699 66092741 -35780428 + AT_rich Low_complexity Low_complexity 1 42 0 2260 100 3 0 chr13 66092861 66093152 -35780017 + AluSg SINE Alu 1 292 -18 1816 169 0 13 chr13 66094398 66094700 -35778469 - AluJb SINE Alu -14 298 1 249 181 96 0 chr13 66095179 66095273 -35777896 + L1MC5 LINE L1 7608 7710 -251 1872 131 20 10 chr13 66095273 66095570 -35777599 + AluJb SINE Alu 1 300 -12 22 56 0 0 chr13 66095620 66095656 -35777513 + AT_rich Low_complexity Low_complexity 1 36 0 484 218 55 101 chr13 66095690 66095947 -35777222 + L1MC5 LINE L1 7681 7925 -36 252 56 0 0 chr13 66095949 66095975 -35777194 + (T)n Simple_repeat Simple_repeat 1 29 -7 2062 122 7 7 chr13 66095975 66096270 -35776899 + AluSx SINE Alu 1 295 -17 252 56 0 0 chr13 66096270 66096279 -35776890 + (T)n Simple_repeat Simple_repeat 28 36 0 373 275 120 64 chr13 66096407 66096522 -35776647 + L1ME LINE L1 5365 5472 -690 1585 158 3 96 chr13 66096522 66096711 -35776458 - AluJb SINE Alu -3 309 163 2555 30 0 10 chr13 66096711 66097007 -35776162 - AluY SINE Alu -18 293 1 1585 158 3 96 chr13 66097007 66097152 -35776017 - AluJb SINE Alu -149 163 6 373 275 120 64 chr13 66097152 66097410 -35775759 + L1ME LINE L1 5472 5759 -403 2209 241 74 60 chr13 66097489 66097820 -35775349 - MER21B LTR ERV1 -51 812 487 2594 153 37 9 chr13 66097820 66098250 -35774919 + MER65A LTR ERV1 3 444 -1 2209 241 74 60 chr13 66098250 66098678 -35774491 - MER21B LTR ERV1 -376 487 43 299 301 14 0 chr13 66098678 66098751 -35774418 - MER21B LTR ERV1 -771 92 19 * 359 242 40 10 chr13 66098743 66098842 -35774327 - MER21B LTR ERV1 -750 113 12 2252 92 7 3 chr13 66099029 66099324 -35773845 + AluSq SINE Alu 1 296 -17 1647 164 0 25 chr13 66099352 66099638 -35773531 - AluJo SINE Alu 0 312 34 1551 96 0 0 chr13 66101006 66101205 -35771964 - AluSx SINE Alu 0 310 112 874 83 0 0 chr13 66101260 66101368 -35771801 - AluSx SINE Alu -204 108 1 691 234 19 0 chr13 66101657 66101815 -35771354 - MER21-int LTR ERV1 -1763 2428 2268 28 48 0 0 chr13 66102074 66102116 -35771053 + AT_rich Low_complexity Low_complexity 1 42 0 1739 184 3 23 chr13 66102197 66102502 -35770667 + AluJb SINE Alu 1 299 -13 2421 59 0 26 chr13 66102552 66102855 -35770314 + AluY SINE Alu 1 295 -16 403 344 52 45 chr13 66103048 66103202 -35769967 + L2 LINE L2 3116 3270 -2 627 247 147 13 chr13 66103437 66103668 -35769501 - MIR SINE MIR 0 262 1 773 118 81 15 chr13 66104115 66104251 -35768918 - MLT1B LTR MaLR -4 386 242 453 136 0 12 chr13 66104232 66104313 -35768856 - MLT1B LTR MaLR -252 138 59 * 250 167 50 17 chr13 66104340 66104400 -35768769 - MLT1B LTR MaLR -306 84 23 357 263 119 17 chr13 66104505 66104623 -35768546 + MIR SINE MIR 22 151 -111 22 56 0 0 chr13 66106445 66106481 -35766688 + AT_rich Low_complexity Low_complexity 1 36 0 183 80 0 0 chr13 66106671 66106696 -35766473 + (CAT)n Simple_repeat Simple_repeat 2 26 0 345 266 11 133 chr13 66106944 66107132 -35766037 + MIR SINE MIR 47 211 -51 248 284 60 15 chr13 66107205 66107272 -35765897 + MIR SINE MIR 26 95 -167 1011 280 62 81 chr13 66108821 66109349 -35763820 + MLT1K LTR MaLR 24 541 -47 3066 230 34 100 chr13 66109362 66110184 -35762985 - L1ME LINE L1 -558 5608 4733 2323 89 0 0 chr13 66110184 66110475 -35762694 - AluSc SINE Alu -16 293 3 3066 230 34 100 chr13 66110475 66110956 -35762213 - L1ME LINE L1 -1433 4733 4495 2252 122 0 13 chr13 66110956 66111268 -35761901 + AluSx SINE Alu 1 308 -4 3066 230 34 100 chr13 66111268 66111950 -35761219 - L1ME LINE L1 -1671 4495 3769 2266 194 30 22 chr13 66111951 66112271 -35760898 + MLT1D LTR MaLR 1 328 -177 189 0 0 0 chr13 66112271 66112292 -35760877 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2266 194 30 22 chr13 66112292 66112472 -35760697 + MLT1D LTR MaLR 328 505 0 1835 250 59 64 chr13 66112473 66113488 -35759681 + MLT1D-int LTR MaLR 2 1124 -247 541 202 24 0 chr13 66113494 66113618 -35759551 + MLT1D LTR MaLR 379 505 0 351 276 16 31 chr13 66113644 66113771 -35759398 + MLT1D-int LTR MaLR 1150 1274 -97 1818 144 17 28 chr13 66113788 66114142 -35759027 - L1MA4A LINE L1 -5 6298 5949 437 244 30 0 chr13 66114145 66114276 -35758893 + MLT1D-int LTR MaLR 1237 1371 0 1660 212 67 43 chr13 66114276 66114767 -35758402 + MLT1D LTR MaLR 3 505 0 36 0 0 0 chr13 66114855 66114891 -35758278 + AT_rich Low_complexity Low_complexity 1 36 0 2541 54 3 0 chr13 66114896 66115191 -35757978 + AluY SINE Alu 1 296 -15 436 169 0 0 chr13 66115262 66115345 -35757824 - L1MB1 LINE L1 -1 6167 6085 3256 139 38 2 chr13 66115345 66115919 -35757250 - Tigger1 DNA MER2_type -1 2417 1823 566 186 0 10 chr13 66115932 66116029 -35757140 + FLAM_C SINE Alu 24 119 -24 314 105 0 18 chr13 66116042 66116099 -35757070 + (GGAGAA)n Simple_repeat Simple_repeat 5 60 0 2572 107 8 0 chr13 66116113 66116483 -35756686 - Tigger1 DNA MER2_type -644 1774 1402 3097 88 16 2 chr13 66116483 66116914 -35756255 + LTR3b LTR ERVK 1 437 0 697 210 100 10 chr13 66117025 66117225 -35755944 + HERVK3 LTR ERVK 55 272 -6971 405 250 0 29 chr13 66117282 66117386 -35755783 + HERVK3 LTR ERVK 580 680 -6563 * 5095 173 22 8 chr13 66117384 66118345 -35754824 + HERVK3 LTR ERVK 1336 2309 -4934 1821 142 55 66 chr13 66118344 66118794 -35754375 + HERVK3 LTR ERVK 2995 5557 -388 * 325 169 0 0 chr13 66118790 66118849 -35754320 + HERVK3 LTR ERVK 5826 5884 -61 * 2916 88 35 0 chr13 66118863 66119285 -35753884 + LTR3b LTR ERVK 1 437 0 * 6203 147 36 14 chr13 66119285 66120400 -35752769 - Tigger1 DNA MER2_type -999 1419 280 25 31 0 0 chr13 66120406 66120438 -35752731 + AT_rich Low_complexity Low_complexity 1 32 0 16625 164 32 12 chr13 66120438 66124307 -35748862 - L1PA14 LINE L1 -3 7596 3192 2393 106 0 0 chr13 66124307 66124610 -35748559 - AluSq SINE Alu -10 303 1 16625 164 32 12 chr13 66124610 66127766 -35745403 - L1PA14 LINE L1 -4407 3192 101 1241 175 13 4 chr13 66127789 66128023 -35745146 - Tigger1 DNA MER2_type -2127 291 56 21 71 0 0 chr13 66128057 66128099 -35745070 + AT_rich Low_complexity Low_complexity 1 42 0 279 275 47 13 chr13 66128210 66128359 -35744810 - L1ME4a LINE L1 0 6121 5968 2053 121 10 23 chr13 66128364 66128670 -35744499 - AluSx SINE Alu -10 302 1 3270 233 60 29 chr13 66128729 66130681 -35742488 - L1MD1 LINE L1 0 6660 4647 1693 216 0 3 chr13 66130681 66130987 -35742182 - AluJb SINE Alu -7 305 1 3270 233 60 29 chr13 66130987 66131067 -35742102 - L1MD1 LINE L1 -2013 4647 4571 419 214 10 10 chr13 66131065 66131163 -35742006 - L1MD1 LINE L1 -134 6108 6011 * 396 253 20 79 chr13 66131452 66131744 -35741425 - L1MD1 LINE L1 -2130 4434 4160 572 178 144 17 chr13 66131831 66131949 -35741220 - FLAM_C SINE Alu 0 133 1 3156 254 54 32 chr13 66131951 66133110 -35740059 - L1MD1 LINE L1 -2391 4173 2965 2755 141 17 51 chr13 66133110 66133643 -35739526 + L1PA15 LINE L1 5651 6165 0 3156 254 54 32 chr13 66133643 66134053 -35739116 - L1MD1 LINE L1 -3599 2965 2566 788 226 61 48 chr13 66134050 66134103 -35739066 - L1MD1 LINE L1 -3998 2747 2696 * 439 39 13 64 chr13 66134103 66134181 -35738988 - L1PA16 LINE L1 -1 6165 6092 788 226 61 48 chr13 66134181 66134521 -35738648 - L1MD1 LINE L1 -4049 2696 2349 3467 223 40 58 chr13 66134525 66136310 -35736859 - L1MD1 LINE L1 -4796 1768 3 1251 278 112 56 chr13 66136336 66137780 -35735389 - L1MEc LINE L1 -4764 1632 109 436 196 0 18 chr13 66138858 66138970 -35734199 + CT-rich Low_complexity Low_complexity 2 111 0 399 230 24 35 chr13 66139076 66139403 -35733766 + CT-rich Low_complexity Low_complexity 1 323 0 535 311 133 29 chr13 66139699 66140081 -35733088 + MLT1H LTR MaLR 119 540 -9 2554 116 62 5 chr13 66140790 66141195 -35731974 - MSTA LTR MaLR 0 428 1 2426 198 50 0 chr13 66141195 66141700 -35731469 - MSTA-int LTR MaLR 0 1651 1122 1648 176 18 39 chr13 66141700 66141856 -35731313 - THE1C LTR MaLR 0 375 217 2296 86 0 49 chr13 66141856 66142181 -35730988 - AluY SINE Alu 0 311 3 2884 73 8 10 chr13 66142183 66142580 -35730589 - L1PA8 LINE L1 -4 6168 5773 1648 176 18 39 chr13 66142580 66142801 -35730368 - THE1C LTR MaLR -159 216 3 5734 179 35 14 chr13 66142803 66143906 -35729263 - MSTA-int LTR MaLR -525 1126 2 2082 133 118 8 chr13 66143913 66144295 -35728874 - MSTA LTR MaLR -4 424 1 1446 173 30 7 chr13 66144295 66144566 -35728603 - MSTB LTR MaLR -149 277 1 291 306 0 0 chr13 66144700 66144785 -35728384 - MLT1I LTR MaLR -219 190 106 25 0 0 0 chr13 66145939 66145964 -35727205 + AT_rich Low_complexity Low_complexity 1 25 0 1068 251 94 37 chr13 66147193 66147694 -35725475 + MER39 LTR ERV1 8 707 0 1276 191 20 40 chr13 66147859 66148110 -35725059 + AluJo SINE Alu 1 246 -66 423 194 39 0 chr13 66148219 66148322 -35724847 + MER39 LTR ERV1 601 707 0 1964 158 13 0 chr13 66148867 66149165 -35724004 - AluJb SINE Alu -10 302 1 835 132 0 8 chr13 66149417 66149538 -35723631 - FLAM_C SINE Alu -13 120 1 1481 207 13 30 chr13 66150018 66150323 -35722846 - AluJo SINE Alu -12 300 1 2425 208 78 46 chr13 66150397 66150635 -35722534 - MER50 LTR ERV1 0 734 505 2505 45 0 3 chr13 66150635 66150925 -35722244 - AluY SINE Alu -22 289 1 2425 208 78 46 chr13 66150925 66151388 -35721781 - MER50 LTR ERV1 -229 505 10 1311 202 29 70 chr13 66151471 66151928 -35721241 + MER34C LTR ERV1 157 565 0 1519 217 99 70 chr13 66151982 66152656 -35720513 + LTR48 LTR ERV1 1 578 -17 482 169 22 0 chr13 66152809 66152898 -35720271 - MIR SINE MIR -88 174 84 286 130 0 0 chr13 66153110 66153156 -35720013 - MER34 LTR ERV1 -50 492 447 * 1377 172 130 101 chr13 66153125 66153554 -35719615 - MER34C LTR ERV1 -64 521 73 2498 60 9 18 chr13 66153554 66153888 -35719281 - L1PA7 LINE L1 -4 6150 5820 1377 172 130 101 chr13 66153888 66153964 -35719205 - MER34C LTR ERV1 -512 73 1 4134 119 2 8 chr13 66154113 66154727 -35718442 + MER4B LTR ERV1 1 610 0 263 311 110 68 chr13 66156579 66157007 -35716162 - MLT1K LTR MaLR -2 586 141 757 239 62 0 chr13 66157506 66157682 -35715487 - MER58A DNA MER1_type 0 224 38 2340 98 0 3 chr13 66157814 66158120 -35715049 + AluY SINE Alu 1 305 -6 464 222 0 98 chr13 66158677 66158830 -35714339 + HsTC2 DNA Tc2 2 139 -1759 1390 244 62 23 chr13 66158836 66159307 -35713862 + HsTC2 DNA Tc2 1233 1897 -1 24 32 0 0 chr13 66159311 66159342 -35713827 + AT_rich Low_complexity Low_complexity 1 31 0 10563 175 43 7 chr13 66159597 66162200 -35710969 - L1M1 LINE L1 -566 5737 3067 223 200 15 15 chr13 66162435 66162500 -35710669 + CT-rich Low_complexity Low_complexity 2 66 0 217 214 0 0 chr13 66162506 66162548 -35710621 + (CA)n Simple_repeat Simple_repeat 1 42 0 284 273 16 47 chr13 66164352 66164480 -35708689 + L2 LINE L2 3179 3302 -11 1624 158 23 15 chr13 66164483 66164749 -35708420 + AluJo SINE Alu 14 281 -31 23 33 0 0 chr13 66164782 66164812 -35708357 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr13 66164886 66164928 -35708241 + AT_rich Low_complexity Low_complexity 1 42 0 198 0 0 0 chr13 66165083 66165105 -35708064 + (TA)n Simple_repeat Simple_repeat 1 22 0 2145 124 17 0 chr13 66165232 66165530 -35707639 - AluSx SINE Alu -8 304 2 21 36 0 0 chr13 66165624 66165652 -35707517 + AT_rich Low_complexity Low_complexity 1 28 0 569 187 24 72 chr13 66166112 66166278 -35706891 + L1MD2 LINE L1 6173 6330 -29 2194 111 0 3 chr13 66168082 66168379 -35704790 - AluSg SINE Alu -14 296 1 242 342 112 39 chr13 66168997 66169354 -35703815 + L2 LINE L2 1669 2065 -1249 2254 171 31 21 chr13 66169354 66169776 -35703393 - MSTC LTR MaLR 0 428 3 242 342 112 39 chr13 66169776 66169854 -35703315 + L2 LINE L2 2065 2136 -1178 2203 262 78 88 chr13 66170535 66171825 -35701344 + L1MA5 LINE L1 1 1277 -5932 11480 161 37 44 chr13 66171835 66173387 -35699782 + L1MA5 LINE L1 3737 5298 -2064 5051 87 26 12 chr13 66173387 66174120 -35699049 + L1PA12 LINE L1 5411 6153 -15 11480 161 37 44 chr13 66174120 66174234 -35698935 + L1MA5 LINE L1 5298 5411 -1951 2103 122 0 3 chr13 66174234 66174529 -35698640 + AluSx SINE Alu 1 294 -18 11480 161 37 44 chr13 66174529 66175234 -35697935 + L1MA5 LINE L1 5411 6119 -1243 1527 192 35 45 chr13 66175234 66175521 -35697648 + AluJo SINE Alu 1 284 -28 11480 161 37 44 chr13 66175521 66175605 -35697564 + L1MA5 LINE L1 6119 6202 -1160 2294 94 20 0 chr13 66175605 66175903 -35697266 + AluSq SINE Alu 1 304 -9 11480 161 37 44 chr13 66175903 66176580 -35696589 + L1MA5 LINE L1 6202 6845 -517 216 0 0 0 chr13 66176580 66176604 -35696565 + (TA)n Simple_repeat Simple_repeat 2 25 0 11480 161 37 44 chr13 66176604 66177119 -35696050 + L1MA5 LINE L1 6845 7362 0 262 354 41 7 chr13 66178099 66178246 -35694923 - LTR67 LTR ERVL 0 557 406 300 328 211 34 chr13 66178705 66179123 -35694046 - L2 LINE L2 -648 2666 2175 664 316 14 34 chr13 66179143 66179434 -35693735 + L2 LINE L2 525 809 -2505 247 323 59 75 chr13 66179751 66179807 -35693362 + L2 LINE L2 1584 1639 -1675 2144 112 33 0 chr13 66179807 66180110 -35693059 - AluSp SINE Alu 0 313 1 247 323 59 75 chr13 66180110 66180239 -35692930 + L2 LINE L2 1639 1766 -1548 4008 141 10 2 chr13 66180259 66180876 -35692293 + MER39B LTR ERV1 4 625 -28 584 316 116 13 chr13 66180882 66181183 -35691986 + L2 LINE L2 1757 2088 -1226 2056 284 74 33 chr13 66181363 66182461 -35690708 - L2 LINE L2 0 3313 2157 432 333 34 71 chr13 66184974 66185271 -35687898 - LTR67 LTR ERVL -269 288 3 928 168 0 71 chr13 66185366 66185528 -35687641 + L1PB4 LINE L1 5969 6116 -40 7084 70 9 2 chr13 66185528 66187242 -35685927 + L1PA6 LINE L1 4434 6152 -2 928 168 0 71 chr13 66187242 66187275 -35685894 + L1PB4 LINE L1 6116 6150 -6 483 321 90 53 chr13 66187798 66188250 -35684919 + L2 LINE L2 2651 3135 -137 533 125 0 0 chr13 66188250 66188330 -35684839 - MADE1 DNA Mariner 0 80 1 483 321 90 53 chr13 66188330 66188474 -35684695 + L2 LINE L2 3135 3272 0 558 155 0 0 chr13 66189544 66189660 -35683509 + CT-rich Low_complexity Low_complexity 3 118 0 501 230 107 48 chr13 66190011 66190198 -35682971 - MIR SINE MIR 0 262 65 2299 94 0 3 chr13 66191317 66191615 -35681554 + AluSc SINE Alu 1 297 -12 256 320 48 24 chr13 66192127 66192252 -35680917 - MLT1K LTR MaLR -260 328 201 248 230 363 0 chr13 66193392 66193505 -35679664 + MER5A DNA MER1_type 7 160 -29 709 158 0 0 chr13 66193569 66193683 -35679486 + AluJo/FLAM SINE Alu 2 115 -197 1012 101 0 0 chr13 66193683 66193812 -35679357 + AluSg/x SINE Alu 170 298 -14 549 216 0 0 chr13 66195903 66196000 -35677169 - MER46A DNA MER2_type -139 97 1 216 97 0 0 chr13 66196201 66196232 -35676937 + (TG)n Simple_repeat Simple_repeat 1 31 0 237 65 0 0 chr13 66197543 66197574 -35675595 + (TA)n Simple_repeat Simple_repeat 2 32 0 227 174 0 0 chr13 66197578 66197624 -35675545 + LTR66 LTR ERVL 394 439 -171 351 203 0 0 chr13 66197624 66197698 -35675471 + (TA)n Simple_repeat Simple_repeat 2 75 0 230 238 71 0 chr13 66197698 66197782 -35675387 + L1MC4 LINE L1 6614 6703 -1339 * 236 233 22 22 chr13 66197756 66197846 -35675323 - L1MC4 LINE L1 -1339 6703 6614 230 292 0 31 chr13 66197866 66197931 -35675238 - L2 LINE L2 -7 3265 3203 907 181 39 6 chr13 66198215 66198397 -35674772 + MER5A DNA MER1_type 1 188 -1 416 237 55 0 chr13 66198411 66198521 -35674648 - MER5B DNA MER1_type -4 174 68 288 303 82 41 chr13 66198502 66198624 -35674545 - MIR3 SINE MIR -76 132 6 * 2086 113 10 7 chr13 66198733 66199024 -35674145 + AluSx SINE Alu 2 293 -19 4390 128 35 10 chr13 66199364 66200088 -35673081 - L1MC1 LINE L1 0 6333 5592 281 353 128 5 chr13 66200182 66200369 -35672800 - MIR SINE MIR -43 219 10 216 0 0 0 chr13 66200684 66200708 -35672461 + (T)n Simple_repeat Simple_repeat 1 24 0 622 278 40 17 chr13 66202655 66202828 -35670341 + MIR SINE MIR 20 196 -66 1362 274 102 59 chr13 66202901 66203812 -35669357 - HAL1 LINE L1 -1 2506 1557 1954 303 117 62 chr13 66204333 66206135 -35667034 + ERVL LTR ERVL 1784 3648 -1837 1066 330 74 17 chr13 66206306 66206948 -35666221 + ERVL LTR ERVL 3938 4575 -910 277 328 32 43 chr13 66207404 66207590 -35665579 + ERVL LTR ERVL 5182 5365 -399 477 323 20 5 chr13 66208255 66208450 -35664719 + LTR67 LTR ERVL 352 549 -8 4263 123 101 99 chr13 66208817 66210198 -35662971 - pTR5 LTR ERV1 0 2438 743 3139 180 17 12 chr13 66210717 66211378 -35661791 - L1MA7 LINE L1 -10 6281 5618 2524 214 33 25 chr13 66211437 66212067 -35661102 - L1MD3 LINE L1 -6 7989 7355 23 33 0 0 chr13 66212155 66212185 -35660984 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 66212280 66212301 -35660868 + AT_rich Low_complexity Low_complexity 1 21 0 2098 130 10 0 chr13 66212367 66212659 -35660510 - AluSx SINE Alu -17 295 1 2375 187 12 2 chr13 66213403 66213826 -35659343 + MSTB1 LTR MaLR 1 427 -5 526 312 54 46 chr13 66216188 66216547 -35656622 - MLT1H LTR MaLR -52 497 73 21 0 0 0 chr13 66216839 66216860 -35656309 + AT_rich Low_complexity Low_complexity 1 21 0 262 260 52 13 chr13 66216967 66217044 -35656125 - L2 LINE L2 0 3313 3234 259 240 13 13 chr13 66217501 66217576 -35655593 + MLT1K LTR MaLR 511 585 -3 321 26 0 0 chr13 66217685 66217723 -35655446 + (ATG)n Simple_repeat Simple_repeat 2 39 0 478 282 51 64 chr13 66217767 66218001 -35655168 - MIR SINE MIR 0 262 32 1274 132 22 22 chr13 66220588 66220815 -35652354 + L1PA15 LINE L1 5939 6165 0 205 231 31 15 chr13 66221327 66221392 -35651777 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 215 346 39 15 chr13 66221481 66221572 -35651597 + MIR SINE MIR 9 100 -108 1270 255 38 83 chr13 66221572 66222152 -35651017 + MLT2B1 LTR ERVL 1 552 -2 7264 194 38 9 chr13 66224180 66226591 -35646578 - L1PA16 LINE L1 -27 6139 3664 242 344 53 15 chr13 66226591 66226722 -35646447 + MIR SINE MIR 127 262 0 491 31 15 0 chr13 66226815 66226880 -35646289 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 200 310 257 0 chr13 66227530 66227643 -35645526 - L2 LINE L2 -560 2754 2613 182 128 26 0 chr13 66229625 66229664 -35643505 + (TG)n Simple_repeat Simple_repeat 1 40 0 2328 150 0 3 chr13 66230155 66230529 -35642640 - MER41B LTR ERV1 -88 547 175 1827 152 0 37 chr13 66230632 66230968 -35642201 - AluSx SINE Alu 0 325 1 549 342 109 53 chr13 66231718 66232492 -35640677 + L2 LINE L2 2459 3256 -16 226 248 83 37 chr13 66282786 66282895 -35590274 + MIR SINE MIR 106 219 -43 1669 181 89 66 chr13 66287852 66288334 -35584835 + MER50 LTR ERV1 240 732 -2 545 172 1 4 chr13 66288858 66288973 -35584196 - L1MA9 LINE L1 -4 6287 6176 4309 190 17 6 chr13 66288976 66289893 -35583276 - L1MA9 LINE L1 -232 6080 5142 3329 115 18 2 chr13 66289893 66290396 -35582773 + MER75 DNA T2_type 3 513 -1 4309 190 17 6 chr13 66290396 66290992 -35582177 - L1MA9 LINE L1 -1170 5142 4554 255 319 113 7 chr13 66291619 66291760 -35581409 + MIR SINE MIR 6 161 -101 235 270 32 0 chr13 66292066 66292129 -35581040 - MLT1J LTR MaLR -372 139 75 242 171 0 0 chr13 66292184 66292225 -35580944 + MIR SINE MIR 160 200 -62 350 323 83 47 chr13 66292867 66292940 -35580229 - L1M4 LINE L1 -2867 3279 3210 1639 186 14 10 chr13 66292940 66293236 -35579933 - AluJo SINE Alu -15 297 1 350 323 83 47 chr13 66293236 66293546 -35579623 - L1M4 LINE L1 -2936 3210 2882 195 173 0 0 chr13 66293557 66293609 -35579560 + (TG)n Simple_repeat Simple_repeat 2 53 0 204 67 0 0 chr13 66293712 66293742 -35579427 + (T)n Simple_repeat Simple_repeat 1 30 0 1055 157 9 32 chr13 66294124 66294340 -35578829 - L1PA13 LINE L1 -2 6161 5951 275 320 122 6 chr13 66294342 66294498 -35578671 + MLT1H1 LTR MaLR 49 222 -333 610 241 41 53 chr13 66294585 66294755 -35578414 + MLT1G1 LTR MaLR 427 594 -1 411 21 0 0 chr13 66294815 66294863 -35578306 + (TG)n Simple_repeat Simple_repeat 1 48 0 937 186 59 65 chr13 66296505 66296827 -35576342 - MER33 DNA MER1_type 0 324 5 7660 85 31 4 chr13 66297004 66298896 -35574273 - L1PA7 LINE L1 0 6469 4548 5041 38 2 0 chr13 66298896 66299500 -35573669 - L1PA4 LINE L1 0 6155 5545 19635 98 4 4 chr13 66299500 66302318 -35570851 - L1PA7 LINE L1 -1898 4563 1746 1240 86 23 0 chr13 66302310 66302484 -35570685 - L1PA7 LINE L1 -5354 1107 930 * 266 299 178 54 chr13 66304747 66305325 -35567844 - L2 LINE L2 -1074 2240 1591 2537 277 120 42 chr13 66305872 66306090 -35567079 - HAL1 LINE L1 -42 2465 2265 1728 158 24 20 chr13 66306090 66306388 -35566781 - AluSq SINE Alu -14 299 1 2537 277 120 42 chr13 66306388 66307940 -35565229 - HAL1 LINE L1 -242 2265 557 762 308 86 34 chr13 66307957 66308422 -35564747 - HAL1 LINE L1 -1992 515 27 22 56 0 0 chr13 66308532 66308568 -35564601 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr13 66309402 66309423 -35563746 + (CA)n Simple_repeat Simple_repeat 2 22 0 632 200 23 6 chr13 66312137 66312312 -35560857 + GA-rich Low_complexity Low_complexity 2 179 0 226 293 0 40 chr13 66316103 66316178 -35556991 + MLT1K LTR MaLR 165 236 -352 219 146 0 0 chr13 66316295 66316336 -35556833 + (GA)n Simple_repeat Simple_repeat 2 42 0 1982 141 3 0 chr13 66317368 66317665 -35555504 - AluSx SINE Alu -14 298 1 21 57 0 0 chr13 66318120 66318155 -35555014 + AT_rich Low_complexity Low_complexity 1 35 0 2507 46 3 7 chr13 66318487 66318794 -35554375 - AluY SINE Alu -5 306 1 334 336 38 29 chr13 66318870 66319108 -35554061 - L2 LINE L2 -831 2483 2244 2429 63 0 38 chr13 66319221 66319538 -35553631 + AluY SINE Alu 1 305 -6 1294 193 59 31 chr13 66321080 66321387 -35551782 + MLT1A2 LTR MaLR 1 331 -65 334 298 125 18 chr13 66323869 66324052 -35549117 + MIR SINE MIR 16 213 -49 484 273 222 37 chr13 66324228 66324444 -35548725 + MIR SINE MIR 6 261 -1 2378 87 3 19 chr13 66325196 66325506 -35547663 - AluY SINE Alu -4 307 3 2249 114 0 0 chr13 66325575 66325872 -35547297 - AluSq SINE Alu -16 297 1 422 281 165 60 chr13 66326127 66326461 -35546708 + MLT1J2 LTR MaLR 72 440 -10 24 53 0 0 chr13 66326622 66326660 -35546509 + AT_rich Low_complexity Low_complexity 1 38 0 1087 314 91 7 chr13 66326873 66327313 -35545856 - LTR16C LTR ERVL -5 486 10 259 195 12 85 chr13 66328090 66328172 -35544997 - MLT1K LTR MaLR -2 586 511 261 336 28 9 chr13 66328430 66328537 -35544632 - MLT1K LTR MaLR -290 298 190 1202 123 12 0 chr13 66329466 66329637 -35543532 - AluSg/x SINE Alu -6 306 134 413 127 28 0 chr13 66329637 66329708 -35543461 - AluJ/FLAM SINE Alu -238 74 2 1024 285 72 17 chr13 66330923 66331326 -35541843 - MLT2F LTR ERVL -2 661 237 742 295 19 56 chr13 66331333 66331652 -35541517 - MLT2F LTR ERVL -345 318 12 1702 119 0 8 chr13 66334002 66334246 -35538923 - THE1C LTR MaLR 0 375 134 24 0 0 0 chr13 66334877 66334901 -35538268 + AT_rich Low_complexity Low_complexity 1 24 0 239 154 58 0 chr13 66335288 66335340 -35537829 - MIR SINE MIR -108 154 100 12019 188 82 10 chr13 66337022 66337800 -35535369 + L1PB1 LINE L1 104 825 -6037 180 0 0 0 chr13 66337800 66337820 -35535349 + (CAG)n Simple_repeat Simple_repeat 1 20 0 12019 188 82 10 chr13 66337820 66342082 -35531087 + L1PB1 LINE L1 825 5511 -1351 3470 105 10 41 chr13 66342085 66342765 -35530404 + L1PB1 LINE L1 5832 6498 -369 317 120 40 51 chr13 66342774 66342949 -35530220 + (TA)n Simple_repeat Simple_repeat 2 174 0 237 154 39 39 chr13 66342952 66343030 -35530139 + (TTATA)n Simple_repeat Simple_repeat 4 81 0 272 115 83 19 chr13 66343035 66343192 -35529977 + (TA)n Simple_repeat Simple_repeat 2 168 0 2188 139 19 3 chr13 66343192 66343552 -35529617 + L1PB1 LINE L1 6498 6863 -4 22 56 0 0 chr13 66343765 66343801 -35529368 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr13 66343888 66343919 -35529250 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr13 66345031 66345070 -35528099 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr13 66345160 66345190 -35527979 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 66345216 66345246 -35527923 + AT_rich Low_complexity Low_complexity 1 30 0 2036 113 7 7 chr13 66345672 66345963 -35527206 - AluSg SINE Alu -19 291 1 729 314 146 7 chr13 66346842 66347279 -35525890 - L2 LINE L2 -37 3276 2784 496 262 89 84 chr13 66347490 66347715 -35525454 - L2 LINE L2 -523 2791 2566 1634 160 32 13 chr13 66347722 66348088 -35525081 + MLT2A2 LTR ERVL 19 453 0 574 141 84 14 chr13 66348499 66348641 -35524528 + L1MA5 LINE L1 6144 6295 -5 635 291 65 28 chr13 66348662 66348823 -35524346 - L1MEc LINE L1 -4771 1625 1471 2181 141 47 8 chr13 66348823 66349184 -35523985 - THE1C LTR MaLR 0 375 1 635 291 65 28 chr13 66349184 66349451 -35523718 - L1MEc LINE L1 -4925 1471 1181 1252 287 109 35 chr13 66349501 66350195 -35522974 - L2 LINE L2 -786 2528 1783 1903 223 99 9 chr13 66350202 66350665 -35522504 - MLT1D LTR MaLR 0 505 1 234 227 13 13 chr13 66352367 66352442 -35520727 + (TA)n Simple_repeat Simple_repeat 1 75 0 609 291 79 33 chr13 66352614 66352855 -35520314 - MIR SINE MIR -3 259 8 23 33 0 0 chr13 66353033 66353063 -35520106 + AT_rich Low_complexity Low_complexity 1 30 0 241 347 41 10 chr13 66353102 66353200 -35519969 - MIR SINE MIR -68 140 40 234 233 93 0 chr13 66353637 66353723 -35519446 - LTR68 LTR ERV1 -640 100 7 240 122 0 0 chr13 66354197 66354238 -35518931 + (TG)n Simple_repeat Simple_repeat 2 42 0 950 177 0 11 chr13 66354641 66354822 -35518347 - L1PB1 LINE L1 -3 6148 5970 25 31 0 0 chr13 66355128 66355160 -35518009 + AT_rich Low_complexity Low_complexity 1 32 0 528 293 58 40 chr13 66355201 66355426 -35517743 + MIR SINE MIR 34 262 0 29 0 0 0 chr13 66357055 66357084 -35516085 + AT_rich Low_complexity Low_complexity 1 29 0 380 364 168 24 chr13 66357377 66358357 -35514812 - L2 LINE L2 -1 3271 2149 375 60 0 0 chr13 66358755 66358805 -35514364 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 1551 205 0 20 chr13 66360659 66360961 -35512208 - AluJb SINE Alu -15 297 2 22 35 0 0 chr13 66362023 66362052 -35511117 + AT_rich Low_complexity Low_complexity 1 29 0 304 311 221 25 chr13 66362657 66362892 -35510277 - L3 LINE CR1 -394 1183 903 24 0 0 0 chr13 66365107 66365131 -35508038 + AT_rich Low_complexity Low_complexity 1 24 0 1036 113 33 0 chr13 66366292 66366443 -35506726 - AluSq SINE Alu -19 294 139 245 75 25 0 chr13 66367430 66367470 -35505699 + (TC)n Simple_repeat Simple_repeat 1 41 0 2006 59 47 0 chr13 66367592 66367846 -35505323 - AluY SINE Alu -11 300 35 358 271 176 56 chr13 66368383 66368540 -35504629 + HAL1b LINE L1 314 451 -897 2252 94 3 0 chr13 66368540 66368838 -35504331 + AluSx SINE Alu 1 299 -13 358 271 176 56 chr13 66368838 66368964 -35504205 + HAL1b LINE L1 451 631 -717 430 120 53 0 chr13 66369319 66369394 -35503775 + L1MA5A LINE L1 6019 6097 -200 237 315 47 8 chr13 66369521 66369648 -35503521 + HAL1b LINE L1 580 711 -637 355 293 32 52 chr13 66369658 66369907 -35503262 + L1M4 LINE L1 2684 2927 -3219 323 333 148 24 chr13 66370863 66371154 -35502015 + MLT1J2 LTR MaLR 3 329 -121 21 0 0 0 chr13 66371189 66371210 -35501959 + AT_rich Low_complexity Low_complexity 1 21 0 365 271 45 13 chr13 66371354 66371509 -35501660 - L1ME LINE L1 -440 5681 5522 784 390 80 11 chr13 66372190 66372741 -35500428 + L3 LINE CR1 984 1572 -5 409 133 13 0 chr13 66373254 66373329 -35499840 + L1MA3 LINE L1 6230 6305 0 187 298 81 103 chr13 66374234 66374468 -35498701 - L3 LINE CR1 -248 1329 1100 1964 127 4 0 chr13 66374468 66374744 -35498425 - AluSx SINE Alu -21 291 15 187 298 81 103 chr13 66374744 66374781 -35498388 - L3 LINE CR1 -477 1100 1064 200 319 26 35 chr13 66374833 66374949 -35498220 - L2 LINE L2 -432 2882 2768 499 293 53 14 chr13 66375022 66375230 -35497939 - L1ME3 LINE L1 -13 6149 5934 580 348 71 3 chr13 66375336 66375646 -35497523 - L3 LINE CR1 -980 597 267 1521 123 71 52 chr13 66375793 66376118 -35497051 - L1MA8 LINE L1 -5 6286 5956 616 146 82 0 chr13 66376134 66376244 -35496925 - L1PA15 LINE L1 -9 6156 6038 300 145 0 48 chr13 66376244 66376297 -35496872 + MSTB1 LTR MaLR 267 318 -114 300 27 0 0 chr13 66377200 66377237 -35495932 + (TG)n Simple_repeat Simple_repeat 2 38 0 1920 96 0 96 chr13 66377302 66377626 -35495543 + AluY SINE Alu 1 293 -18 228 362 57 23 chr13 66377796 66377928 -35495241 - L2 LINE L2 -2515 799 658 2177 162 33 26 chr13 66377928 66378355 -35494814 + MSTB1 LTR MaLR 3 432 0 228 362 57 23 chr13 66378355 66378399 -35494770 - L2 LINE L2 -2656 658 617 415 303 129 0 chr13 66380047 66380225 -35492944 + MIR SINE MIR 62 262 0 210 171 0 0 chr13 66380301 66380342 -35492827 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 36 40 0 0 chr13 66380716 66380766 -35492403 + AT_rich Low_complexity Low_complexity 1 50 0 1855 131 0 0 chr13 66381322 66381590 -35491579 + AluSx SINE Alu 35 302 -10 279 256 94 77 chr13 66381715 66381832 -35491337 - L2 LINE L2 0 3313 3195 22 35 0 0 chr13 66381873 66381902 -35491267 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 66382037 66382067 -35491102 + AT_rich Low_complexity Low_complexity 1 30 0 2279 48 48 17 chr13 66382411 66382706 -35490463 - AluY SINE Alu -7 304 1 2052 103 0 7 chr13 66383407 66383729 -35489440 + AluSc SINE Alu 1 320 0 4078 159 9 35 chr13 66383945 66384719 -35488450 - L1MB1 LINE L1 -16 6173 5420 210 327 0 35 chr13 66384741 66384854 -35488315 + CT-rich Low_complexity Low_complexity 1 109 0 244 279 85 63 chr13 66385677 66386136 -35487033 - L1M4 LINE L1 -2818 3328 2860 194 0 39 0 chr13 66386987 66387013 -35486156 + (TC)n Simple_repeat Simple_repeat 2 28 0 294 143 0 0 chr13 66387013 66387062 -35486107 + (TG)n Simple_repeat Simple_repeat 1 49 0 495 0 0 0 chr13 66387387 66387442 -35485727 + (TC)n Simple_repeat Simple_repeat 2 56 0 201 263 66 13 chr13 66387940 66388016 -35485153 + MIR SINE MIR 47 126 -136 395 292 188 13 chr13 66388036 66388190 -35484979 - MER5A DNA MER1_type 0 189 9 1987 124 58 28 chr13 66388378 66388742 -35484427 + THE1C LTR MaLR 1 375 0 339 85 0 0 chr13 66389664 66389711 -35483458 + (TG)n Simple_repeat Simple_repeat 1 47 0 200 241 52 35 chr13 66390892 66390950 -35482219 + L2 LINE L2 3214 3272 0 664 173 0 43 chr13 66391651 66391790 -35481379 - FLAM_C SINE Alu 0 133 1 536 291 39 64 chr13 66391889 66392123 -35481046 + L2 LINE L2 3085 3312 -1 281 48 24 0 chr13 66394705 66394747 -35478422 - L1MA3 LINE L1 0 6305 6263 6682 125 15 6 chr13 66394818 66396024 -35477145 - L1MA3 LINE L1 0 7724 6505 3898 153 66 40 chr13 66396018 66396744 -35476425 - L1MA3 LINE L1 -5722 1843 1099 * 612 140 35 9 chr13 66396741 66396855 -35476314 - L1MA3 LINE L1 -7432 133 17 * 363 315 33 39 chr13 66397321 66397502 -35475667 - L1ME3A LINE L1 -1 6169 5990 600 251 96 58 chr13 66397614 66397957 -35475212 - L1MC5 LINE L1 -442 7519 7164 300 308 104 38 chr13 66398191 66398431 -35474738 - HAL1b LINE L1 -701 647 392 1215 260 65 14 chr13 66398482 66398978 -35474191 - L1M4 LINE L1 -1529 4617 4097 * 4265 172 33 7 chr13 66398971 66400511 -35472658 + L1PA16 LINE L1 4360 5936 -230 2403 256 103 24 chr13 66400505 66401606 -35471563 - L1M4 LINE L1 -2315 3831 2644 * 404 239 125 23 chr13 66401611 66401787 -35471382 - L1M4 LINE L1 -3551 2595 2402 414 335 66 13 chr13 66402005 66402157 -35471012 - MER91A DNA MER1_type -26 170 11 238 279 0 0 chr13 66402898 66402966 -35470203 + L1MC4 LINE L1 7781 7848 -194 435 348 89 5 chr13 66403371 66403735 -35469434 - ERVL LTR ERVL -506 4979 4574 1742 309 55 23 chr13 66403816 66404555 -35468614 - ERVL LTR ERVL -1294 4470 3708 763 329 17 0 chr13 66404585 66404819 -35468350 - ERVL LTR ERVL -2133 3631 3394 5271 189 45 4 chr13 66404979 66406019 -35467150 - L1MA4A LINE L1 -23 6280 5285 234 0 0 0 chr13 66406019 66406045 -35467124 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 5271 189 45 4 chr13 66406045 66407058 -35466111 - L1MA4A LINE L1 -1018 5285 4083 509 203 16 8 chr13 66407251 66407374 -35465795 - L1MB4 LINE L1 -20 6160 6037 * 910 263 10 14 chr13 66407366 66407659 -35465510 - L1M4c LINE L1 -3210 3172 2881 228 182 0 0 chr13 66407659 66407703 -35465466 + (TA)n Simple_repeat Simple_repeat 2 45 0 247 188 29 14 chr13 66407703 66407772 -35465397 + L1MCa LINE L1 1995 2064 -4362 565 178 33 0 chr13 66407772 66407924 -35465245 + (TA)n Simple_repeat Simple_repeat 1 157 0 3503 242 50 37 chr13 66407928 66409755 -35463414 - L1M4c LINE L1 -3498 2884 960 324 336 9 9 chr13 66409768 66409881 -35463288 + MLT1I LTR MaLR 74 186 -223 442 276 136 18 chr13 66410865 66411151 -35462018 + HAL1b LINE L1 611 930 -418 325 257 39 53 chr13 66411166 66411372 -35461797 + HAL1b LINE L1 989 1191 -157 43 56 0 0 chr13 66412616 66412687 -35460482 + AT_rich Low_complexity Low_complexity 1 71 0 203 259 95 70 chr13 66412812 66412970 -35460199 + L2 LINE L2 3115 3276 -37 420 306 14 0 chr13 66413711 66413858 -35459311 + (CA)n Simple_repeat Simple_repeat 2 150 0 681 128 0 0 chr13 66417158 66417267 -35455902 - L1PB3 LINE L1 -2 6868 6760 1728 113 78 3 chr13 66417272 66417556 -35455613 - LTR14B LTR ERVK 0 608 304 4291 113 121 32 chr13 66417575 66418425 -35454744 - pTR5 LTR ERV1 0 2606 1520 917 237 30 61 chr13 66418610 66418905 -35454264 - pTR5 LTR ERV1 -1410 1028 743 479 89 10 139 chr13 66418906 66419007 -35454162 - LTR14A LTR ERVK -256 88 1 13307 217 38 19 chr13 66419014 66419258 -35453911 - L1PB3 LINE L1 -114 6756 6518 306 0 0 0 chr13 66419258 66419292 -35453877 + (TG)n Simple_repeat Simple_repeat 2 35 0 13307 217 38 19 chr13 66419292 66423964 -35449205 - L1PB3 LINE L1 -352 6518 1737 576 106 0 0 chr13 66423965 66424050 -35449119 + L1PBa LINE L1 1671 1755 -5108 2199 109 3 0 chr13 66424115 66424408 -35448761 + AluSc SINE Alu 9 302 -7 4965 224 59 38 chr13 66424605 66426077 -35447092 - L1MDa LINE L1 -4556 1984 328 206 32 32 0 chr13 66426077 66426108 -35447061 + (TTG)n Simple_repeat Simple_repeat 2 33 0 4965 224 59 38 chr13 66426108 66426413 -35446756 - L1MDa LINE L1 -6212 328 31 224 326 109 14 chr13 66426445 66426583 -35446586 + L3b LINE CR1 1190 1340 -243 275 167 0 0 chr13 66429380 66429428 -35443741 + Charlie8 DNA MER1_type 1370 1417 -1000 2833 104 23 42 chr13 66430169 66430451 -35442718 - L1MA1 LINE L1 -1 7720 7449 2008 112 0 31 chr13 66430451 66430737 -35442432 - AluSx SINE Alu -13 299 23 2833 104 23 42 chr13 66430737 66430925 -35442244 - L1MA1 LINE L1 -272 7449 7259 1434 110 12 0 chr13 66430926 66431174 -35441995 - L1MA1 LINE L1 -743 6822 6654 2007 156 137 5 chr13 66431174 66431547 -35441622 - MSTA LTR MaLR 0 428 7 14896 160 23 28 chr13 66431554 66433574 -35439595 - L1MA1 LINE L1 -908 6657 4629 11346 41 20 0 chr13 66433574 66435721 -35437448 + L1PA5 LINE L1 3985 6154 0 14896 160 23 28 chr13 66435721 66436473 -35436696 - L1MA1 LINE L1 -2936 4629 3875 2210 124 0 10 chr13 66436473 66436787 -35436382 - AluY SINE Alu 0 311 1 14896 160 23 28 chr13 66436787 66437445 -35435724 - L1MA1 LINE L1 -3690 3875 3215 2008 141 3 0 chr13 66437445 66437735 -35435434 - AluSg SINE Alu -19 291 1 14896 160 23 28 chr13 66437735 66438599 -35434570 - L1MA1 LINE L1 -4350 3215 2348 2072 158 0 0 chr13 66438599 66438909 -35434260 - AluSx SINE Alu -2 310 1 14896 160 23 28 chr13 66438909 66440169 -35433000 - L1MA1 LINE L1 -5217 2348 1127 619 247 88 44 chr13 66440245 66440585 -35432584 - HAL1 LINE L1 -17 2490 2136 235 336 106 0 chr13 66440615 66440728 -35432441 + L2 LINE L2 3189 3313 0 2862 178 33 13 chr13 66440867 66441495 -35431674 - L1MC2 LINE L1 -9 6335 5695 631 257 178 38 chr13 66441621 66441670 -35431499 - HAL1 LINE L1 -710 1797 1756 1772 149 139 94 chr13 66441670 66442168 -35431001 + MLT2B1 LTR ERVL 1 520 0 631 257 178 38 chr13 66442168 66442899 -35430270 - HAL1 LINE L1 -751 1756 908 26 0 0 0 chr13 66443185 66443211 -35429958 + AT_rich Low_complexity Low_complexity 1 26 0 309 239 77 84 chr13 66443462 66443617 -35429552 - HAL1 LINE L1 -2303 204 51 463 179 8 8 chr13 66444348 66444465 -35428704 + CT-rich Low_complexity Low_complexity 4 120 0 22 20 8 0 chr13 66445012 66445081 -35428088 + AT_rich Low_complexity Low_complexity 1 29 0 193 255 21 0 chr13 66446686 66446733 -35426436 + L2 LINE L2 3189 3236 -77 275 192 177 39 chr13 66447271 66447401 -35425768 - L1MC/D LINE L1 -1922 5886 5739 2435 148 31 7 chr13 66447405 66447823 -35425346 - MSTA LTR MaLR 0 428 1 5787 194 94 54 chr13 66447827 66449268 -35423901 - MSTA-int LTR MaLR -4 1576 79 29595 111 14 33 chr13 66449271 66449349 -35423820 + L1PA7 LINE L1 328 406 -6063 218 56 28 0 chr13 66449349 66449385 -35423784 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 29595 111 14 33 chr13 66449385 66455425 -35417744 + L1PA7 LINE L1 406 6469 0 468 304 78 23 chr13 66457578 66457795 -35415374 - MIR SINE MIR -32 230 2 1133 67 0 0 chr13 66458889 66459038 -35414131 - L1PA5 LINE L1 -2 6152 6004 3675 106 2 2 chr13 66459146 66459694 -35413475 - L1P LINE L1 -4587 1559 1012 4124 99 3 12 chr13 66460150 66460753 -35412416 + HERVE LTR ERV1 3249 3846 -3967 326 310 112 95 chr13 66460850 66461208 -35411961 - L1MDa LINE L1 -5777 763 400 25637 49 10 1 chr13 66461675 66465522 -35407647 - L1PA5 LINE L1 -176 5978 2100 4034 115 2 8 chr13 66466241 66466843 -35406326 + HERVE LTR ERV1 3249 3846 -3967 336 236 102 153 chr13 66466845 66467218 -35405951 + L1M4b LINE L1 208 561 -6298 * 357 288 95 119 chr13 66466912 66467384 -35405785 - L1MDa LINE L1 -5605 935 475 4831 119 51 0 chr13 66467664 66468386 -35404783 - L1P LINE L1 -5376 770 12 731 248 41 41 chr13 66468837 66469055 -35404114 + MER20 DNA MER1_type 1 218 -1 238 301 187 24 chr13 66470428 66470551 -35402618 - MIR SINE MIR -7 255 113 1402 231 72 6 chr13 66471555 66471889 -35401280 - MLT1A1 LTR MaLR 0 365 10 397 254 52 42 chr13 66471976 66472169 -35401000 - Charlie8 DNA MER1_type -2139 278 84 951 195 80 29 chr13 66472417 66472654 -35400515 - MSTB LTR MaLR 0 426 160 4480 249 21 33 chr13 66472657 66473667 -35399502 - THE1C-int LTR MaLR -653 998 1 1512 183 90 15 chr13 66473667 66474001 -35399168 - THE1C LTR MaLR 0 375 17 317 342 104 43 chr13 66474426 66474955 -35398214 + HAL1 LINE L1 308 868 -1639 600 236 68 59 chr13 66474998 66475235 -35397934 + L1M4b LINE L1 878 1116 -5831 23 0 0 0 chr13 66475278 66475301 -35397868 + AT_rich Low_complexity Low_complexity 1 23 0 635 254 55 0 chr13 66475489 66475654 -35397515 - MIR SINE MIR -26 236 63 2734 165 10 14 chr13 66475877 66476362 -35396807 - MER31A LTR ERV1 0 485 3 220 175 35 35 chr13 66476698 66476755 -35396414 + T-rich Low_complexity Low_complexity 5 61 0 22 56 0 0 chr13 66477435 66477471 -35395698 + AT_rich Low_complexity Low_complexity 1 36 0 391 350 88 14 chr13 66478405 66478622 -35394547 + MIR SINE MIR 29 261 -1 209 313 36 62 chr13 66478643 66478835 -35394334 + L3 LINE CR1 1210 1396 -181 2187 126 110 24 chr13 66479518 66479900 -35393269 - MSTA LTR MaLR -5 423 9 439 366 32 5 chr13 66480135 66480321 -35392848 + MIR3 SINE MIR 3 193 -15 291 312 13 0 chr13 66482713 66482790 -35390379 - L2 LINE L2 -2 3270 3193 203 133 0 0 chr13 66483593 66483623 -35389546 + (TG)n Simple_repeat Simple_repeat 2 31 0 1822 180 0 0 chr13 66484064 66484358 -35388811 + AluJo SINE Alu 1 294 -18 4360 91 23 3 chr13 66486012 66486627 -35386542 - L1PA10 LINE L1 0 6168 5542 242 368 135 22 chr13 66487876 66488061 -35385108 + MIR3 SINE MIR 2 207 -1 195 246 0 0 chr13 66489041 66489098 -35384071 + CT-rich Low_complexity Low_complexity 4 60 0 5890 119 11 30 chr13 66491101 66491982 -35381187 - L1PA13 LINE L1 -1 6162 5295 4661 29 2 0 chr13 66491982 66492533 -35380636 - L1PA3 LINE L1 0 6155 5604 5890 119 11 30 chr13 66492533 66492823 -35380346 - L1PA13 LINE L1 -868 5295 5001 200 269 77 109 chr13 66494003 66494159 -35379010 + L2 LINE L2 3117 3267 -5 219 36 0 0 chr13 66495029 66495057 -35378112 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 925 214 0 64 chr13 66495836 66496070 -35377099 - AluJo SINE Alu 0 312 94 24 32 0 0 chr13 66496394 66496425 -35376744 + AT_rich Low_complexity Low_complexity 1 31 0 2220 104 0 3 chr13 66496443 66496732 -35376437 - AluSc SINE Alu -21 288 1 1892 201 72 9 chr13 66497135 66497554 -35375615 + L1MA8 LINE L1 5 449 -6581 5244 176 40 11 chr13 66497562 66497911 -35375258 + L1MA8 LINE L1 5005 5342 -1764 189 0 0 0 chr13 66497911 66497932 -35375237 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 5244 176 40 11 chr13 66497932 66498681 -35374488 + L1MA8 LINE L1 5342 6135 -971 3353 147 9 9 chr13 66498680 66499257 -35373912 + L1MA8 LINE L1 6604 7180 -71 * 230 107 179 0 chr13 66499384 66499440 -35373729 + L1MA8 LINE L1 7180 7245 -6 37 52 0 0 chr13 66499604 66499662 -35373507 + AT_rich Low_complexity Low_complexity 1 58 0 646 282 67 5 chr13 66500908 66501117 -35372052 + MIR SINE MIR 41 262 0 21 0 0 0 chr13 66502548 66502569 -35370600 + AT_rich Low_complexity Low_complexity 1 21 0 395 344 32 6 chr13 66502920 66503077 -35370092 - MIR3 SINE MIR -29 179 19 2259 121 0 0 chr13 66503548 66503854 -35369315 + AluSx SINE Alu 1 306 -6 457 335 49 22 chr13 66504596 66504820 -35368349 - MIR SINE MIR 0 262 33 2067 155 111 8 chr13 66505090 66505477 -35367692 + MSTA LTR MaLR 2 428 0 1671 18 0 14 chr13 66506395 66506616 -35366553 - L1P LINE L1 -2894 3252 3035 27 0 0 0 chr13 66507202 66507229 -35365940 + AT_rich Low_complexity Low_complexity 1 27 0 326 336 29 57 chr13 66507238 66507482 -35365687 + MIR SINE MIR 1 237 -25 374 321 146 31 chr13 66508608 66508895 -35364274 + L2 LINE L2 2588 2907 -407 510 300 31 0 chr13 66508912 66509042 -35364127 + L2 LINE L2 3175 3308 -5 24 67 0 0 chr13 66509484 66509529 -35363640 + AT_rich Low_complexity Low_complexity 1 45 0 387 269 83 56 chr13 66509905 66510121 -35363048 - MIR SINE MIR 0 262 41 286 262 12 12 chr13 66510430 66510514 -35362655 - MIR SINE MIR -50 212 129 1784 186 0 0 chr13 66510870 66511166 -35362003 + AluJb SINE Alu 12 307 -5 256 259 99 0 chr13 66511346 66511427 -35361742 + MLT1J2 LTR MaLR 55 143 -307 1648 197 7 0 chr13 66511788 66512088 -35361081 + AluJb SINE Alu 7 308 -4 363 272 194 46 chr13 66512268 66512592 -35360577 + MLT1J2 LTR MaLR 55 426 -24 642 304 82 51 chr13 66512616 66513070 -35360099 - LTR33A LTR ERVL -28 495 28 23 33 0 0 chr13 66513681 66513711 -35359458 + AT_rich Low_complexity Low_complexity 1 30 0 1183 162 45 127 chr13 66513711 66514025 -35359144 - AluYb8 SINE Alu -25 293 6 384 322 48 55 chr13 66514039 66514312 -35358857 + MLT1J LTR MaLR 229 499 -12 506 310 146 9 chr13 66515742 66515955 -35357214 + MLT1K LTR MaLR 155 396 -192 258 183 33 17 chr13 66516000 66516060 -35357109 + CT-rich Low_complexity Low_complexity 4 64 0 200 268 54 0 chr13 66518884 66518940 -35354229 - L2 LINE L2 0 3272 3214 248 257 176 0 chr13 66518976 66519050 -35354119 + MER5A DNA MER1_type 34 120 -69 1611 96 104 13 chr13 66519160 66519527 -35353642 + LTR12 LTR ERV1 1 2022 -416 1535 151 66 10 chr13 66519527 66519832 -35353337 + L1MA4A LINE L1 5467 5788 -515 211 321 15 29 chr13 66519841 66519978 -35353191 + (TA)n Simple_repeat Simple_repeat 1 135 0 2695 154 42 2 chr13 66520028 66520527 -35352642 + L1MA4A LINE L1 5784 6302 -1 2449 147 71 51 chr13 66521014 66521725 -35351444 + MER51A LTR ERV1 1 640 0 249 33 0 0 chr13 66522067 66522097 -35351072 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 56 0 0 chr13 66522139 66522175 -35350994 + AT_rich Low_complexity Low_complexity 1 36 0 487 259 58 0 chr13 66522339 66522478 -35350691 + MIR SINE MIR 116 262 0 2063 134 0 7 chr13 66522732 66523038 -35350131 - AluSx SINE Alu -8 304 1 240 241 0 0 chr13 66523046 66523100 -35350069 - AluSp SINE Alu -135 168 115 301 329 71 38 chr13 66523314 66523524 -35349645 - L3b LINE CR1 -32 1551 1335 602 309 104 8 chr13 66523614 66523901 -35349268 - L2 LINE L2 -304 3009 2698 210 150 0 0 chr13 66524267 66524307 -35348862 + (TA)n Simple_repeat Simple_repeat 2 41 0 28 29 0 0 chr13 66526953 66526988 -35346181 + AT_rich Low_complexity Low_complexity 1 35 0 180 313 0 0 chr13 66527019 66527067 -35346102 - L2 LINE L2 -17 3296 3249 32 0 0 0 chr13 66527671 66527703 -35345466 + AT_rich Low_complexity Low_complexity 1 32 0 1916 128 46 0 chr13 66528291 66528573 -35344596 - AluSx SINE Alu -17 295 1 9820 94 1 15 chr13 66530229 66531655 -35341514 - L1P LINE L1 -1401 4745 3340 1925 198 8 3 chr13 66532175 66532538 -35340631 + MLT1A1 LTR MaLR 1 365 0 389 335 11 55 chr13 66532625 66532807 -35340362 + MER5B DNA MER1_type 1 174 -4 2365 46 0 3 chr13 66533769 66534087 -35339082 - AluY SINE Alu 0 317 1 213 159 0 0 chr13 66534135 66534179 -35338990 + (ATG)n Simple_repeat Simple_repeat 3 46 0 494 294 61 23 chr13 66535192 66535406 -35337763 - L2 LINE L2 -1202 2112 1891 2102 132 10 0 chr13 66535763 66536066 -35337103 - AluSx SINE Alu -5 307 2 208 298 83 0 chr13 66536734 66536818 -35336351 - MIR SINE MIR -56 206 116 3061 150 45 16 chr13 66537187 66537759 -35335410 - Tigger3(Golem) DNA MER2_type -8 3021 2433 244 355 72 33 chr13 66537946 66538098 -35335071 + L2 LINE L2 3002 3159 -113 2114 102 0 10 chr13 66538680 66538994 -35334175 - AluY SINE Alu 0 311 1 213 159 0 0 chr13 66539042 66539086 -35334083 + (ATG)n Simple_repeat Simple_repeat 3 46 0 384 259 56 62 chr13 66540658 66540820 -35332349 - HERVL LTR ERVL -2518 3136 2976 335 302 62 8 chr13 66541138 66541267 -35331902 - HERVL LTR ERVL -3337 2427 2292 1197 299 35 11 chr13 66541413 66541847 -35331322 + L1MEc LINE L1 61 504 -5892 2286 88 0 3 chr13 66541854 66542148 -35331021 + AluY SINE Alu 1 293 -18 1475 253 66 91 chr13 66542150 66542941 -35330228 + L1MEc LINE L1 692 1451 -4945 222 105 0 0 chr13 66542941 66542979 -35330190 + (CA)n Simple_repeat Simple_repeat 2 39 0 1475 253 66 91 chr13 66542979 66543239 -35329930 + L1MEc LINE L1 1451 1716 -4680 1378 260 69 25 chr13 66543254 66544225 -35328944 + L1MEc LINE L1 1818 2779 -3436 180 215 74 132 chr13 66544336 66544457 -35328712 + MIR SINE MIR 139 252 -10 2075 145 3 0 chr13 66544836 66545147 -35328022 - AluSx SINE Alu 0 312 1 362 248 229 13 chr13 66545497 66545650 -35327519 - MIR SINE MIR -49 213 28 2698 37 3 6 chr13 66547870 66548198 -35324971 - L1PA5 LINE L1 -6 6148 5822 259 315 53 51 chr13 66548291 66548481 -35324688 - MIR SINE MIR -37 225 36 209 386 116 46 chr13 66548625 66549058 -35324111 + L2 LINE L2 2809 3271 -1 22 0 0 0 chr13 66549468 66549490 -35323679 + AT_rich Low_complexity Low_complexity 1 22 0 815 224 18 0 chr13 66550499 66550664 -35322505 - MER5A DNA MER1_type -21 168 1 345 24 0 0 chr13 66551788 66551830 -35321339 + (CA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr13 66552419 66552443 -35320726 + AT_rich Low_complexity Low_complexity 1 24 0 1014 16 40 0 chr13 66554832 66554957 -35318212 - L1PA5 LINE L1 -5 6149 6020 182 314 29 0 chr13 66555885 66555955 -35317214 + MIR SINE MIR 78 149 -113 198 0 0 0 chr13 66555976 66555998 -35317171 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 261 381 44 40 chr13 66556172 66556424 -35316745 + L2 LINE L2 2658 2910 -404 287 281 116 41 chr13 66556565 66556711 -35316458 - MIR SINE MIR -50 212 56 1915 206 0 83 chr13 66557246 66557741 -35315428 + MLT2B1 LTR ERVL 3 456 -64 912 91 19 7 chr13 66557747 66557901 -35315268 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 902 276 44 7 chr13 66558247 66558519 -35314650 - MLT1C LTR MaLR 0 467 186 181 304 161 36 chr13 66558946 66559058 -35314111 - L2 LINE L2 0 3272 3147 2326 104 0 3 chr13 66560902 66561211 -35311958 + AluSx SINE Alu 5 312 0 323 261 18 54 chr13 66561686 66561797 -35311372 + MIR SINE MIR 156 262 0 211 150 25 0 chr13 66561797 66561837 -35311332 + (TTA)n Simple_repeat Simple_repeat 3 43 0 22 70 0 0 chr13 66562679 66562722 -35310447 + AT_rich Low_complexity Low_complexity 1 43 0 225 431 67 12 chr13 66563316 66563571 -35309598 - L2 LINE L2 -429 2885 2617 1676 188 17 0 chr13 66563770 66564062 -35309107 + AluSx SINE Alu 1 297 -15 1306 239 25 32 chr13 66564216 66564617 -35308552 - MLT1D LTR MaLR 0 505 108 1394 177 11 4 chr13 66564803 66565074 -35308095 + L1MB4 LINE L1 5902 6174 -6 339 25 0 0 chr13 66565322 66565362 -35307807 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 440 355 88 27 chr13 66565521 66565932 -35307237 + L1MEc LINE L1 42 477 -5919 1576 147 111 0 chr13 66565959 66566238 -35306931 + AluJb SINE Alu 1 310 -2 244 299 95 58 chr13 66566378 66566459 -35306710 + L1MEc LINE L1 1538 1615 -4781 2245 74 10 20 chr13 66566459 66566756 -35306413 - AluSc SINE Alu -5 304 11 244 299 95 58 chr13 66566756 66566915 -35306254 + L1MEc LINE L1 1615 1787 -4609 1181 275 55 35 chr13 66566947 66567637 -35305532 + L1MEc LINE L1 3141 3844 -2371 1623 199 43 102 chr13 66567642 66567746 -35305423 + MLT1D LTR MaLR 1 110 -395 2043 114 45 3 chr13 66567746 66568036 -35305133 - AluSg SINE Alu -5 305 4 1623 199 43 102 chr13 66568036 66568468 -35304701 + MLT1D LTR MaLR 110 505 0 547 239 11 64 chr13 66568473 66568661 -35304508 + L1MEc LINE L1 3851 4028 -2187 418 203 0 25 chr13 66568692 66568771 -35304398 + L1 LINE L1 2 78 -6952 230 114 0 0 chr13 66568775 66568810 -35304359 - L1 LINE L1 -6949 81 47 1767 187 34 32 chr13 66568827 66568901 -35304268 + L1 LINE L1 74 146 -6884 297 0 0 0 chr13 66568901 66568934 -35304235 + (CA)n Simple_repeat Simple_repeat 2 34 0 1767 187 34 32 chr13 66568934 66569238 -35303931 + L1 LINE L1 146 453 -6577 837 170 58 36 chr13 66569249 66569473 -35303696 + L1 LINE L1 4139 4367 -2739 3408 111 2 2 chr13 66569578 66570054 -35303115 - THE1-int LTR MaLR -687 893 418 2083 113 0 0 chr13 66570062 66570345 -35302824 + AluSx SINE Alu 20 302 -10 349 230 0 0 chr13 66570370 66570457 -35302712 - L1MC2 LINE L1 0 6738 6652 3969 212 118 17 chr13 66570474 66570814 -35302355 - L1MC2 LINE L1 -136 6602 6298 2508 110 3 3 chr13 66570814 66571169 -35302000 + THE1A LTR MaLR 1 355 0 3969 212 118 17 chr13 66571169 66572800 -35300369 - L1MC2 LINE L1 -440 6298 4419 5564 174 53 23 chr13 66572921 66573332 -35299837 - L1MA8 LINE L1 -6 6285 5888 729 46 9 19 chr13 66573332 66573440 -35299729 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1579 184 0 57 chr13 66573440 66573739 -35299430 - AluJo SINE Alu -30 282 1 5564 174 53 23 chr13 66573739 66575314 -35297855 - L1MA8 LINE L1 -402 5889 4228 534 178 0 11 chr13 66575314 66575404 -35297765 + Tigger3b DNA MER2_type 1 89 -1142 300 131 246 0 chr13 66575645 66575706 -35297463 - MADE1 DNA Mariner -4 76 1 495 325 187 30 chr13 66576238 66576773 -35296396 + L3 LINE CR1 958 1576 -1 1839 184 26 12 chr13 66576882 66577225 -35295944 - MER7A DNA MER2_type 0 346 1 467 310 68 22 chr13 66577713 66578087 -35295082 - L1MC4a LINE L1 -1187 6855 6437 * 5588 218 96 11 chr13 66578061 66579613 -35293556 - L1MC2 LINE L1 -4247 2293 610 272 239 148 0 chr13 66579759 66579847 -35293322 - L1MC3 LINE L1 -867 6918 6818 24 32 0 0 chr13 66579847 66579878 -35293291 + AT_rich Low_complexity Low_complexity 1 31 0 659 294 97 19 chr13 66579904 66580370 -35292799 - L1M4 LINE L1 -2056 4090 3589 207 340 72 20 chr13 66580918 66580990 -35292179 + MIR SINE MIR 86 153 -109 1819 140 3 57 chr13 66580990 66581305 -35291864 - AluSx SINE Alu -14 298 1 207 340 72 20 chr13 66581305 66581385 -35291784 + MIR SINE MIR 153 246 -16 300 275 50 100 chr13 66581513 66581673 -35291496 + HAL1 LINE L1 581 732 -1775 2169 72 0 29 chr13 66582846 66583152 -35290017 + AluY SINE Alu 1 297 -14 7155 31 3 0 chr13 66583260 66584310 -35288859 - L1PA4 LINE L1 -2 6153 5085 933 182 0 0 chr13 66584432 66584597 -35288572 + FRAM SINE Alu 2 166 0 21 82 0 0 chr13 66585900 66585949 -35287220 + AT_rich Low_complexity Low_complexity 1 49 0 252 213 0 0 chr13 66587587 66587648 -35285521 + GA-rich Low_complexity Low_complexity 5 65 0 204 214 0 0 chr13 66588160 66588216 -35284953 + (TATATG)n Simple_repeat Simple_repeat 5 60 0 2986 266 100 12 chr13 66588329 66589784 -35283385 + L1MC/D LINE L1 3887 5463 -752 669 177 23 74 chr13 66589991 66590166 -35283003 - AluJb SINE Alu 0 312 147 343 346 77 27 chr13 66590242 66590644 -35282525 - ERVL LTR ERVL -4578 1186 765 267 317 0 40 chr13 66592371 66592472 -35280697 + MIR SINE MIR 164 260 -2 21 0 0 0 chr13 66592610 66592631 -35280538 + AT_rich Low_complexity Low_complexity 1 21 0 261 182 0 0 chr13 66593103 66593158 -35280011 + CT-rich Low_complexity Low_complexity 2 56 0 28 61 0 0 chr13 66593168 66593217 -35279952 + AT_rich Low_complexity Low_complexity 1 49 0 13839 198 28 5 chr13 66593217 66597540 -35275629 - L1PB3 LINE L1 -7 6863 2443 357 312 46 9 chr13 66597626 66597735 -35275434 - MIR SINE MIR -60 148 36 11056 189 11 37 chr13 66598585 66601267 -35271902 + L1M1 LINE L1 15 4327 -3238 246 343 20 0 chr13 66603284 66603383 -35269786 + L2 LINE L2 3163 3263 -9 2225 111 0 0 chr13 66603471 66603768 -35269401 - AluSq SINE Alu -16 297 1 358 291 20 46 chr13 66603786 66603937 -35269232 + MIR SINE MIR 5 151 -111 615 27 0 0 chr13 66604031 66604104 -35269065 + (AATAG)n Simple_repeat Simple_repeat 1 73 0 267 274 95 0 chr13 66605944 66606028 -35267141 - MIR SINE MIR -168 94 3 260 179 0 30 chr13 66607080 66607147 -35266022 + A-rich Low_complexity Low_complexity 2 66 0 30 59 0 0 chr13 66607728 66607779 -35265390 + AT_rich Low_complexity Low_complexity 1 51 0 351 209 28 55 chr13 66607826 66608008 -35265161 + T-rich Low_complexity Low_complexity 4 180 0 273 372 31 0 chr13 66610333 66610524 -35262645 + L1ME3 LINE L1 5741 5937 -225 1936 70 0 4 chr13 66611859 66612117 -35261052 - L1PA7 LINE L1 0 6154 5898 727 128 0 0 chr13 66612121 66612230 -35260939 - AluSg/x SINE Alu -32 280 172 5532 45 0 0 chr13 66612230 66612914 -35260255 - L1P LINE L1 -1159 4987 4304 1752 39 0 0 chr13 66613243 66613449 -35259720 - AluY SINE Alu -105 206 1 252 0 0 0 chr13 66613543 66613571 -35259598 + (A)n Simple_repeat Simple_repeat 1 28 0 210 304 0 0 chr13 66614491 66614547 -35258622 + MIR SINE MIR 95 150 -112 2076 35 8 4 chr13 66615337 66615591 -35257578 - AluY SINE Alu -13 298 44 21 36 0 0 chr13 66615952 66615980 -35257189 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 66617656 66617696 -35255473 + AT_rich Low_complexity Low_complexity 1 40 0 188 333 114 23 chr13 66618201 66618333 -35254836 - MIR SINE MIR -16 246 103 361 326 134 13 chr13 66618491 66618715 -35254454 - MIR SINE MIR 0 262 12 1179 208 0 5 chr13 66618912 66619119 -35254050 + Tigger7 DNA MER2_type 2 207 -526 1508 200 40 3 chr13 66619130 66619430 -35253739 + L1PB4 LINE L1 5839 6149 -7 24 32 0 0 chr13 66619791 66619822 -35253347 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 66620331 66620353 -35252816 + AT_rich Low_complexity Low_complexity 1 22 0 235 260 0 0 chr13 66621153 66621203 -35251966 + CT-rich Low_complexity Low_complexity 4 53 0 520 214 139 48 chr13 66621277 66621464 -35251705 + MER63A DNA MER1_type 4 207 -3 726 237 6 13 chr13 66621526 66621682 -35251487 - MER63A DNA MER1_type -1 209 55 949 221 5 5 chr13 66622056 66622274 -35250895 + AluJb SINE Alu 90 307 0 236 208 61 84 chr13 66622338 66622445 -35250724 + L1MC4a LINE L1 7738 7808 0 25 0 0 0 chr13 66623134 66623159 -35250010 + AT_rich Low_complexity Low_complexity 1 25 0 36 0 0 0 chr13 66623203 66623239 -35249930 + AT_rich Low_complexity Low_complexity 1 36 0 31 82 0 0 chr13 66623625 66623698 -35249471 + AT_rich Low_complexity Low_complexity 1 73 0 7415 55 2 16 chr13 66624407 66626145 -35247024 + L1PA7 LINE L1 4428 6151 -3 498 352 47 12 chr13 66626364 66626705 -35246464 - L1MEc LINE L1 -5997 399 47 244 258 0 15 chr13 66626774 66626840 -35246329 - L1M4 LINE L1 -3126 3020 2956 14655 79 45 2 chr13 66626979 66629390 -35243779 + L1P3 LINE L1 3183 5689 -465 22 56 0 0 chr13 66629518 66629554 -35243615 + AT_rich Low_complexity Low_complexity 1 36 0 2216 182 131 5 chr13 66629992 66630569 -35242600 - MER39 LTR ERV1 0 707 4 308 213 201 44 chr13 66630756 66631029 -35242140 - L1M4 LINE L1 -2670 3476 3161 1246 174 0 0 chr13 66631037 66631255 -35241914 - AluJb SINE Alu -4 308 91 1505 89 236 0 chr13 66631255 66631501 -35241668 + LTR12 LTR ERV1 1 304 -410 * 8833 92 4 8 chr13 66631499 66632724 -35240445 + Harlequin LTR ERV1 3735 4954 -3445 1343 133 146 12 chr13 66632717 66633039 -35240130 + Harlequin LTR ERV1 840 1204 -5692 * 457 288 93 0 chr13 66633039 66633157 -35240012 - MER5A DNA MER1_type -60 129 1 459 284 159 20 chr13 66633231 66633432 -35239737 - MLT1K LTR MaLR -358 230 2 1715 160 18 72 chr13 66633592 66633980 -35239189 + L1MA9 LINE L1 5800 6166 -146 412 250 10 0 chr13 66634071 66634175 -35238994 + L1MA10 LINE L1 6226 6330 -4 383 310 9 9 chr13 66634176 66634289 -35238880 + MER94 DNA DNA 17 129 -5 21 0 0 0 chr13 66634566 66634587 -35238582 + AT_rich Low_complexity Low_complexity 1 21 0 310 113 16 16 chr13 66634946 66635008 -35238161 + (TA)n Simple_repeat Simple_repeat 2 63 0 25 51 0 0 chr13 66636157 66636196 -35236973 + AT_rich Low_complexity Low_complexity 1 39 0 54 62 0 0 chr13 66636830 66636926 -35236243 + AT_rich Low_complexity Low_complexity 1 96 0 1481 167 42 21 chr13 66637057 66637232 -35235937 - AluJb SINE Alu -16 296 111 282 116 0 0 chr13 66637232 66637275 -35235894 + (TG)n Simple_repeat Simple_repeat 2 44 0 1481 167 42 21 chr13 66637275 66637387 -35235782 - AluJb SINE Alu -201 111 3 200 244 0 0 chr13 66638025 66638066 -35235103 + T-rich Low_complexity Low_complexity 1 41 0 253 299 117 19 chr13 66639537 66639691 -35233478 + MIR3 SINE MIR 37 205 -3 1632 166 0 4 chr13 66639934 66640193 -35232976 - AluJb SINE Alu -24 288 31 633 254 35 51 chr13 66640344 66640541 -35232628 + MIR SINE MIR 14 207 -55 28 29 0 0 chr13 66641447 66641482 -35231687 + AT_rich Low_complexity Low_complexity 1 35 0 1919 139 152 11 chr13 66641494 66641869 -35231300 + MSTA LTR MaLR 1 428 0 248 331 26 1 chr13 66642447 66642536 -35230633 + MIR SINE MIR 54 144 -64 1652 187 53 71 chr13 66643093 66643543 -35229626 - L1MA10 LINE L1 -49 6285 5844 360 111 0 0 chr13 66643687 66643741 -35229428 + (TG)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chr13 66644259 66644284 -35228885 + AT_rich Low_complexity Low_complexity 1 25 0 207 108 27 0 chr13 66644745 66644782 -35228387 + (TA)n Simple_repeat Simple_repeat 2 39 0 460 270 34 20 chr13 66644834 66644982 -35228187 + MLT1J LTR MaLR 78 227 -284 1156 325 72 5 chr13 66645402 66645821 -35227348 + MLT1H1 LTR MaLR 3 449 -106 826 38 9 0 chr13 66645845 66645950 -35227219 + AluY SINE Alu 1 106 -205 759 206 91 14 chr13 66646139 66646348 -35226821 + MSTB2 LTR MaLR 10 234 -223 6708 57 16 0 chr13 66646384 66647384 -35225785 - L1PA7 LINE L1 -13 6141 5142 9038 95 14 2 chr13 66647385 66648814 -35224355 + L1P3 LINE L1 4064 5507 -647 724 118 9 9 chr13 66648932 66649042 -35224127 - MSTA LTR MaLR -318 110 1 8236 158 20 55 chr13 66649042 66649873 -35223296 - MSTA-int LTR MaLR 0 1580 832 1934 128 3 27 chr13 66649873 66650171 -35222998 - AluSq SINE Alu -22 291 1 8236 158 20 55 chr13 66650171 66650972 -35222197 - MSTA-int LTR MaLR -748 832 5 686 126 29 0 chr13 66650976 66651079 -35222090 - MSTA LTR MaLR 0 428 323 4750 139 48 95 chr13 66651180 66652333 -35220836 + Tigger3b DNA MER2_type 121 1218 -13 3897 209 50 11 chr13 66652346 66653313 -35219856 - L1 LINE L1 -1917 4229 3226 2292 167 5 8 chr13 66653343 66653738 -35219431 - L1MC1 LINE L1 -98 6653 6260 771 144 0 8 chr13 66653739 66653864 -35219305 + FLAM_C SINE Alu 13 136 -7 2160 167 105 7 chr13 66653864 66654403 -35218766 - L1MC1 LINE L1 -476 6275 2238 2566 237 83 18 chr13 66654536 66655727 -35217442 - L1MC1 LINE L1 -4580 1986 674 292 288 163 7 chr13 66655768 66655921 -35217248 - L1MC1 LINE L1 -6231 333 157 514 200 0 0 chr13 66656004 66656094 -35217075 + MLT1H1 LTR MaLR 460 549 -6 2078 151 0 0 chr13 66656102 66656413 -35216756 + AluSq SINE Alu 2 312 -1 324 268 98 13 chr13 66656475 66656628 -35216541 + L1M4 LINE L1 4467 4632 -1514 431 273 87 0 chr13 66659898 66660059 -35213110 + MIR SINE MIR 29 203 -59 260 132 0 0 chr13 66660066 66660104 -35213065 + tRNA-Met-e tRNA tRNA 1 38 -37 25 65 0 0 chr13 66660242 66660288 -35212881 + AT_rich Low_complexity Low_complexity 1 46 0 630 244 6 25 chr13 66660618 66660778 -35212391 - FRAM SINE Alu -9 167 11 183 204 0 0 chr13 66661121 66661170 -35211999 + CT-rich Low_complexity Low_complexity 1 49 0 1428 165 83 0 chr13 66661278 66661544 -35211625 - AluJb SINE Alu -24 288 1 2209 114 0 0 chr13 66661888 66662187 -35210982 + AluSx SINE Alu 1 299 -13 988 308 176 32 chr13 66662730 66663315 -35209854 + L2 LINE L2 2210 2878 -436 3619 180 8 15 chr13 66664002 66664724 -35208445 + L1P LINE L1 4013 4729 -1417 1200 91 81 0 chr13 66664725 66664911 -35208258 + L1PA14 LINE L1 5961 6161 0 11332 40 6 0 chr13 66665342 66667501 -35205668 - L1PA2 LINE L1 -5 6150 3985 2713 166 15 4 chr13 66667501 66668019 -35205150 + L1MA9 LINE L1 3195 3718 -2428 34841 35 3 3 chr13 66718041 66722347 -35150822 + L1P LINE L1 490 4799 -1347 590 270 10 5 chr13 66722453 66722649 -35150520 - L1M4 LINE L1 -3381 2765 2569 4174 209 31 27 chr13 66724039 66724077 -35149092 + L1MA9 LINE L1 4994 5030 -1282 2584 11 0 0 chr13 66724077 66724360 -35148809 + AluY SINE Alu 17 299 -12 4174 209 31 27 chr13 66724360 66725615 -35147554 + L1MA9 LINE L1 5030 6287 -25 238 341 79 8 chr13 66725687 66725813 -35147356 + MIR SINE MIR 53 187 -75 1828 122 5 75 chr13 66726002 66726372 -35146797 - MER4A LTR ERV1 -1 663 261 562 109 65 0 chr13 66726372 66726464 -35146705 - MER4A LTR ERV1 -566 98 1 778 118 8 17 chr13 66727711 66727830 -35145339 - MER4B LTR ERV1 -36 574 457 306 0 0 0 chr13 66727861 66727895 -35145274 + (CA)n Simple_repeat Simple_repeat 1 34 0 1228 248 13 13 chr13 66728884 66729183 -35143986 - AluJo SINE Alu -2 300 2 246 62 0 0 chr13 66730627 66730659 -35142510 + (TG)n Simple_repeat Simple_repeat 2 33 0 6414 234 172 8 chr13 66730709 66731353 -35141816 - L1MC3 LINE L1 -16 8564 8027 225 0 0 0 chr13 66731353 66731378 -35141791 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 387 0 0 0 chr13 66731377 66731420 -35141749 + (TG)n Simple_repeat Simple_repeat 2 44 0 6414 234 172 8 chr13 66731378 66732794 -35140375 - L1MC3 LINE L1 -553 8027 6215 21 0 0 0 chr13 66733615 66733636 -35139533 + AT_rich Low_complexity Low_complexity 1 21 0 702 284 19 23 chr13 66733997 66734212 -35138957 - MIR SINE MIR 0 262 49 197 301 96 12 chr13 66734409 66734492 -35138677 + L2 LINE L2 3181 3270 -2 183 375 89 18 chr13 66734558 66734670 -35138499 - L2 LINE L2 -20 3252 3133 484 204 13 64 chr13 66735557 66735646 -35137523 - L1MCb LINE L1 -5203 842 763 2360 80 3 3 chr13 66735646 66735948 -35137221 - AluSp SINE Alu -11 302 1 484 204 13 64 chr13 66735948 66736015 -35137154 - L1MCb LINE L1 -5282 763 694 * 1599 237 41 21 chr13 66735999 66736607 -35136562 - L1M4 LINE L1 -2780 3366 2747 2099 95 7 3 chr13 66736795 66737091 -35136078 + AluY SINE Alu 1 297 -14 3832 264 96 28 chr13 66737092 66737310 -35135859 - L1MC3 LINE L1 -755 6186 5984 2211 96 3 0 chr13 66737310 66737611 -35135558 + AluSp SINE Alu 7 308 -5 3832 264 96 28 chr13 66737611 66739330 -35133839 - L1MC3 LINE L1 -957 5984 4118 1581 235 37 26 chr13 66739332 66739792 -35133377 + MLT1C LTR MaLR 1 465 -2 183 162 0 0 chr13 66739926 66739963 -35133206 + T-rich Low_complexity Low_complexity 4 40 0 2342 63 0 3 chr13 66740511 66740811 -35132358 - AluY SINE Alu -12 299 1 227 300 0 0 chr13 66741431 66741511 -35131658 + L1MEd LINE L1 686 765 -5354 21 57 0 0 chr13 66742594 66742629 -35130540 + AT_rich Low_complexity Low_complexity 1 35 0 716 261 44 6 chr13 66742646 66742873 -35130296 - L1MD1 LINE L1 -246 5996 5798 2101 90 10 3 chr13 66742880 66743169 -35130000 - AluSc SINE Alu -18 291 1 1277 237 45 51 chr13 66743250 66743702 -35129467 - MER39 LTR ERV1 -2 682 67 338 179 79 100 chr13 66743705 66743797 -35129372 - L1MD1 LINE L1 -575 5784 5694 2032 114 10 3 chr13 66743797 66744094 -35129075 - AluSq SINE Alu -14 299 1 338 179 79 100 chr13 66744094 66744141 -35129028 - L1MD1 LINE L1 -665 5694 5648 565 265 36 84 chr13 66744184 66744656 -35128513 - L1MC3 LINE L1 -4887 1536 1233 502 232 52 90 chr13 66744667 66744934 -35128235 + L1MC5 LINE L1 6843 7099 -862 1420 212 82 9 chr13 66744935 66745275 -35127894 + MLT1A1 LTR MaLR 1 365 0 713 260 79 8 chr13 66745386 66745640 -35127529 + L1MC5 LINE L1 7249 7520 -441 623 231 16 0 chr13 66745998 66746119 -35127050 + MSTB1 LTR MaLR 9 131 -301 1773 227 83 13 chr13 66748338 66748797 -35124372 + MER76 LTR ERV 1 491 -197 2517 285 61 45 chr13 66748842 66749016 -35124153 - L1 LINE L1 -2015 4131 3961 2213 19 0 0 chr13 66749016 66749274 -35123895 - L1PA4 LINE L1 -3 6152 5895 2517 285 61 45 chr13 66749274 66750925 -35122244 - L1 LINE L1 -2185 3961 2246 28 0 0 0 chr13 66751011 66751039 -35122130 + AT_rich Low_complexity Low_complexity 1 28 0 1912 155 10 0 chr13 66751495 66751799 -35121370 - AluSx SINE Alu -2 310 4 1603 165 17 24 chr13 66751812 66752103 -35121066 - AluJb SINE Alu -23 289 1 260 276 23 11 chr13 66753420 66753507 -35119662 + MLT1J2 LTR MaLR 339 426 -24 402 223 123 0 chr13 66753931 66754061 -35119108 + MER104 DNA Tc2 4 149 -31 1540 182 21 28 chr13 66754094 66754385 -35118784 + AluJo SINE Alu 1 289 -23 29 60 0 0 chr13 66754412 66754462 -35118707 + AT_rich Low_complexity Low_complexity 1 50 0 201 321 12 25 chr13 66755440 66755521 -35117648 + MIR SINE MIR 20 99 -109 2761 81 20 2 chr13 66756015 66756408 -35116761 - L1PA13 LINE L1 0 6163 5764 317 356 23 8 chr13 66756646 66756778 -35116391 + L2 LINE L2 2927 3060 -212 180 268 0 0 chr13 66757202 66757243 -35115926 - L2 LINE L2 -259 3054 3014 26 0 0 0 chr13 66758919 66758945 -35114224 + AT_rich Low_complexity Low_complexity 1 26 0 188 149 21 0 chr13 66759061 66759108 -35114061 + (TA)n Simple_repeat Simple_repeat 2 49 0 3939 192 32 41 chr13 66759499 66761005 -35112164 - L1M3 LINE L1 -517 5817 4303 4994 173 64 8 chr13 66761018 66761777 -35111392 - L1MA5 LINE L1 -4 6296 5581 207 69 0 0 chr13 66761777 66761806 -35111363 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4994 173 64 8 chr13 66761806 66762722 -35110447 - L1MA5 LINE L1 -719 5581 4540 1353 222 0 28 chr13 66762749 66763037 -35110132 - AluJo SINE Alu -18 294 15 506 218 0 0 chr13 66763091 66763201 -35109968 - L1M3 LINE L1 -1830 4316 4207 * 4162 218 49 25 chr13 66763198 66764326 -35108843 + L1M3 LINE L1 3054 4208 -1938 1386 219 76 28 chr13 66764640 66764996 -35108173 + MSTB1 LTR MaLR 11 383 -49 369 280 71 58 chr13 66765420 66765645 -35107524 - L2 LINE L2 0 3313 3086 25 31 0 0 chr13 66765990 66766022 -35107147 + AT_rich Low_complexity Low_complexity 1 32 0 2131 135 42 20 chr13 66766651 66767007 -35106162 + THE1B LTR MaLR 1 364 0 8714 122 1 3 chr13 66767007 66768265 -35104904 + THE1B-int LTR MaLR 1 1255 -325 22 35 0 0 chr13 66769626 66769655 -35103514 + AT_rich Low_complexity Low_complexity 1 29 0 713 182 19 44 chr13 66770532 66770691 -35102478 + FRAM SINE Alu 1 155 -11 26 30 0 0 chr13 66771089 66771122 -35102047 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr13 66771282 66771320 -35101849 + AT_rich Low_complexity Low_complexity 1 38 0 31 44 0 0 chr13 66771970 66772015 -35101154 + AT_rich Low_complexity Low_complexity 1 45 0 2051 97 4 0 chr13 66772568 66772870 -35100299 + AluSp SINE Alu 14 316 0 288 194 26 50 chr13 66773070 66773150 -35100019 - L1MB5 LINE L1 -1 6173 6102 2524 238 29 20 chr13 66773162 66773808 -35099361 + MER76 LTR ERV 13 664 -24 706 269 27 10 chr13 66773811 66774082 -35099087 - LTR35 LTR ERV1 -2 677 405 434 167 26 0 chr13 66774415 66774493 -35098676 - L1MB5 LINE L1 -63 6111 6032 336 282 87 48 chr13 66775072 66775278 -35097891 - LTR33A LTR ERVL -3 520 307 586 334 55 8 chr13 66775305 66775630 -35097539 + HERVL LTR ERVL 855 1270 -4290 294 254 28 0 chr13 66776117 66776188 -35096981 + HERVL LTR ERVL 1852 1924 -3730 1206 81 47 0 chr13 66776221 66776393 -35096776 + PABL_A LTR ERV1 1 180 -480 1542 170 46 7 chr13 66776493 66776776 -35096393 - MLT1A1 LTR MaLR -71 294 1 25 31 0 0 chr13 66777853 66777885 -35095284 + AT_rich Low_complexity Low_complexity 1 32 0 269 206 44 0 chr13 66779578 66779646 -35093523 + Charlie8 DNA MER1_type 143 213 -2204 595 166 21 28 chr13 66779818 66779963 -35093206 - SVA Other Other -761 625 482 2095 153 24 19 chr13 66779981 66780353 -35092816 - THE1C LTR MaLR 0 375 2 288 137 0 0 chr13 66780496 66780547 -35092622 + (T)n Simple_repeat Simple_repeat 1 51 0 5152 244 34 30 chr13 66780798 66782988 -35090181 + L1M2 LINE L1 2548 4616 -1530 2428 60 3 13 chr13 66783451 66783765 -35089404 - AluY SINE Alu 0 311 1 1671 119 163 28 chr13 66783825 66784144 -35089025 - THE1B LTR MaLR -2 362 1 1861 243 76 2 chr13 66784254 66784743 -35088426 - L1ME1 LINE L1 -18 6148 5624 991 158 16 0 chr13 66784781 66784964 -35088205 + L1M2 LINE L1 5351 5536 -776 * 14141 167 42 29 chr13 66784958 66786535 -35086634 - L1 LINE L1 -3664 3901 2346 1722 176 3 19 chr13 66786535 66786848 -35086321 - AluJb SINE Alu -4 308 1 14141 167 42 29 chr13 66786848 66788746 -35084423 - L1 LINE L1 -5219 2346 36 1658 157 128 15 chr13 66788746 66789083 -35084086 - THE1C LTR MaLR 0 375 1 14141 167 42 29 chr13 66789083 66789120 -35084049 - L1 LINE L1 -7529 36 1 553 356 62 50 chr13 66789126 66789786 -35083383 + L2 LINE L2 2005 2672 -642 21 0 0 0 chr13 66789980 66790001 -35083168 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr13 66790241 66790262 -35082907 + (TA)n Simple_repeat Simple_repeat 1 21 0 506 333 74 24 chr13 66790636 66790975 -35082194 - ERVL LTR ERVL -2763 3001 2646 383 318 66 63 chr13 66792067 66792573 -35080596 + L1ME LINE L1 1309 1786 -4429 21 0 0 0 chr13 66792801 66792822 -35080347 + AT_rich Low_complexity Low_complexity 1 21 0 357 293 37 12 chr13 66793307 66793463 -35079706 + L1MB7 LINE L1 5511 5654 -467 4883 215 16 38 chr13 66793627 66794922 -35078247 + L1ME LINE L1 2532 3798 -2417 2803 234 23 56 chr13 66795025 66796064 -35077105 + L1ME LINE L1 4223 5227 -988 1604 206 25 41 chr13 66796061 66796498 -35076671 + L1MA8 LINE L1 5833 6262 -29 * 1621 206 43 33 chr13 66796548 66796971 -35076198 + L1MB7 LINE L1 5712 6138 -46 7889 164 22 14 chr13 66797287 66799774 -35073395 + L1MA2 LINE L1 3696 6202 -102 992 215 24 0 chr13 66799969 66800174 -35072995 + L1PA16 LINE L1 5950 6159 -7 2641 141 26 5 chr13 66801294 66801713 -35071456 - MSTA LTR MaLR 0 428 1 218 250 0 18 chr13 66802320 66802376 -35070793 + CT-rich Low_complexity Low_complexity 3 57 0 1953 141 0 3 chr13 66802950 66803240 -35069929 - AluSg SINE Alu -21 289 1 21 0 0 0 chr13 66803364 66803385 -35069784 + AT_rich Low_complexity Low_complexity 1 21 0 293 252 67 8 chr13 66803386 66803505 -35069664 + L1ME LINE L1 5750 5875 -315 41 82 0 0 chr13 66803535 66803632 -35069537 + AT_rich Low_complexity Low_complexity 1 97 0 2889 168 7 26 chr13 66803730 66803892 -35069277 - L1PA16 LINE L1 -9 6157 5993 2252 153 97 3 chr13 66803892 66804283 -35068886 - MSTA LTR MaLR 0 428 1 2889 168 7 26 chr13 66804283 66804687 -35068482 - L1PA16 LINE L1 -173 5993 5602 546 138 0 0 chr13 66804730 66804817 -35068352 + L1P4 LINE L1 5522 5608 -558 343 118 0 0 chr13 66804818 66804869 -35068300 - MSTA LTR MaLR -318 110 60 21 0 0 0 chr13 66805168 66805189 -35067980 + AT_rich Low_complexity Low_complexity 1 21 0 2128 117 7 0 chr13 66806367 66806675 -35066494 - AluSp SINE Alu -3 310 1 24 77 0 0 chr13 66807823 66807875 -35065294 + AT_rich Low_complexity Low_complexity 1 52 0 1252 204 3 93 chr13 66808035 66808369 -35064800 + AluJb SINE Alu 1 304 -8 21 0 0 0 chr13 66810225 66810246 -35062923 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr13 66810444 66810493 -35062676 + AT_rich Low_complexity Low_complexity 1 49 0 3319 186 79 28 chr13 66811172 66811971 -35061198 + L1MC2 LINE L1 5505 6344 0 255 340 22 22 chr13 66812005 66812276 -35060893 + L1ME LINE L1 4882 5152 -994 33 80 0 0 chr13 66812337 66812412 -35060757 + AT_rich Low_complexity Low_complexity 1 75 0 661 319 29 10 chr13 66812513 66812827 -35060342 + L1ME LINE L1 5492 5811 -359 302 267 11 11 chr13 66812905 66812995 -35060174 + (TA)n Simple_repeat Simple_repeat 1 90 0 387 301 105 52 chr13 66813063 66813425 -35059744 + L1M4 LINE L1 2719 3099 -3047 950 26 9 0 chr13 66813580 66813694 -35059475 + SVA Other Other 1271 1385 -1 338 291 60 60 chr13 66813763 66813997 -35059172 + L1M4 LINE L1 2579 2812 -3334 384 314 76 0 chr13 66814024 66814142 -35059027 + MLT1G1 LTR MaLR 448 574 -21 553 283 115 4 chr13 66814173 66814399 -35058770 - MIR SINE MIR 0 262 12 201 405 18 0 chr13 66814476 66814587 -35058582 + MIR SINE MIR 32 144 -64 201 322 17 59 chr13 66815600 66815718 -35057451 + MIR SINE MIR 91 203 -59 297 75 0 0 chr13 66816814 66816854 -35056315 + (CA)n Simple_repeat Simple_repeat 1 40 0 971 235 24 12 chr13 66816983 66817238 -35055931 + LTR22B LTR ERVK 1 258 -234 2034 125 3 3 chr13 66817476 66817779 -35055390 - AluSx SINE Alu -9 303 1 191 88 29 0 chr13 66818391 66818425 -35054744 + (TA)n Simple_repeat Simple_repeat 2 36 0 230 226 24 12 chr13 66818466 66818550 -35054619 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 21 0 0 0 chr13 66818633 66818654 -35054515 + AT_rich Low_complexity Low_complexity 1 21 0 2160 90 3 3 chr13 66819103 66819391 -35053778 - AluSg SINE Alu -22 288 1 21 0 0 0 chr13 66820713 66820734 -35052435 + AT_rich Low_complexity Low_complexity 1 21 0 1938 142 40 52 chr13 66821028 66821469 -35051700 - THE1B LTR MaLR 0 428 1 3256 113 16 8 chr13 66821501 66822003 -35051166 + MER9 LTR ERVK 2 507 -4 377 332 31 36 chr13 66822768 66822961 -35050208 - L2 LINE L2 -244 3069 2878 829 142 42 133 chr13 66823393 66823633 -35049536 - LTR45B LTR ERV1 0 489 272 1596 104 12 0 chr13 66823698 66823947 -35049222 + L1PA13 LINE L1 5910 6161 -2 206 121 0 0 chr13 66824519 66824552 -35048617 + (A)n Simple_repeat Simple_repeat 1 33 0 589 298 77 22 chr13 66824638 66825085 -35048084 - LTR33 LTR ERVL -2 519 1 276 356 98 0 chr13 66825457 66825589 -35047580 + MIR SINE MIR 48 192 -70 1267 164 67 19 chr13 66826728 66826997 -35046172 + L1MA4 LINE L1 6006 6287 -13 2211 93 7 0 chr13 66827320 66827610 -35045559 + AluSp SINE Alu 1 292 -21 23 86 0 0 chr13 66828074 66828132 -35045037 + AT_rich Low_complexity Low_complexity 1 58 0 200 125 0 25 chr13 66828781 66828821 -35044348 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 24 0 0 0 chr13 66830969 66830993 -35042176 + AT_rich Low_complexity Low_complexity 1 24 0 243 242 39 0 chr13 66831314 66831442 -35041727 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 24 0 0 0 chr13 66831448 66831472 -35041697 + AT_rich Low_complexity Low_complexity 1 24 0 183 184 0 0 chr13 66831512 66831550 -35041619 + (TA)n Simple_repeat Simple_repeat 1 38 0 30 77 0 0 chr13 66832802 66832867 -35040302 + AT_rich Low_complexity Low_complexity 1 65 0 311 330 59 8 chr13 66833019 66833137 -35040032 - L2 LINE L2 -4 3309 3186 22 0 0 0 chr13 66833186 66833208 -35039961 + AT_rich Low_complexity Low_complexity 1 22 0 1920 159 151 0 chr13 66833343 66833715 -35039454 + MSTA LTR MaLR 1 428 0 1872 166 36 6 chr13 66833869 66834206 -35038963 + MER7A DNA MER2_type 2 346 0 672 258 111 28 chr13 66834272 66834524 -35038645 - MLT1D LTR MaLR 0 505 233 919 240 23 62 chr13 66834528 66834756 -35038413 + L1MB3 LINE L1 3509 3720 -2426 3533 129 6 4 chr13 66834756 66835300 -35037869 + L1PA16 LINE L1 5612 6156 -10 919 240 23 62 chr13 66835300 66835425 -35037744 + L1MB3 LINE L1 3720 3848 -2298 1570 199 14 3 chr13 66835428 66835720 -35037449 + AluJb SINE Alu 1 295 -17 3527 214 54 35 chr13 66835720 66836742 -35036427 + L1MB3 LINE L1 4168 5227 -947 1657 155 6 76 chr13 66836742 66837071 -35036098 + AluJo SINE Alu 1 306 -6 3527 214 54 35 chr13 66837071 66837850 -35035319 + L1MB3 LINE L1 5227 5990 -184 287 75 0 0 chr13 66837860 66837900 -35035269 - THE1B LTR MaLR -324 40 1 11421 102 1 0 chr13 66837900 66839478 -35033691 - THE1B-int LTR MaLR 0 1580 1 1999 116 78 20 chr13 66839478 66839822 -35033347 - THE1B LTR MaLR 0 364 1 273 181 267 9 chr13 66839822 66839927 -35033242 + L1MB3 LINE L1 6052 6183 0 1891 163 29 35 chr13 66840794 66841169 -35032000 - THE1C LTR MaLR 0 375 3 227 274 10 59 chr13 66841300 66841402 -35031767 + MIR SINE MIR 120 216 -46 1843 154 6 16 chr13 66842080 66842291 -35030878 - AluSx SINE Alu 0 312 289 213 39 0 0 chr13 66842291 66842317 -35030852 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1843 154 6 16 chr13 66842317 66842601 -35030568 - AluSx SINE Alu -23 289 4 312 362 63 23 chr13 66843541 66843762 -35029407 - L1ME LINE L1 -338 5824 5595 25 31 0 0 chr13 66843763 66843795 -35029374 + AT_rich Low_complexity Low_complexity 1 32 0 204 208 0 42 chr13 66844026 66844074 -35029095 + (TATG)n Simple_repeat Simple_repeat 3 48 0 2808 6 0 3 chr13 66847103 66847415 -35025754 - AluYa5 SINE Alu 0 311 1 27 49 0 0 chr13 66848085 66848126 -35025043 + AT_rich Low_complexity Low_complexity 1 41 0 212 207 0 35 chr13 66849178 66849236 -35023933 + CT-rich Low_complexity Low_complexity 1 56 0 321 26 0 0 chr13 66849638 66849676 -35023493 + (CA)n Simple_repeat Simple_repeat 2 39 0 473 339 127 3 chr13 66850114 66850421 -35022748 + L1ME3A LINE L1 5607 5951 -219 2238 100 0 13 chr13 66850540 66850839 -35022330 - AluSx SINE Alu -17 295 1 26 50 0 0 chr13 66851011 66851051 -35022118 + AT_rich Low_complexity Low_complexity 1 40 0 304 360 29 49 chr13 66851096 66851404 -35021765 + L1ME LINE L1 5539 5840 -326 1249 158 43 18 chr13 66851557 66851836 -35021333 - L1MA8 LINE L1 -2 6289 6004 265 247 0 43 chr13 66852677 66852770 -35020399 + MER58C DNA MER1_type 44 132 -83 215 294 0 0 chr13 66852770 66852821 -35020348 + GA-rich Low_complexity Low_complexity 3 53 0 558 251 32 53 chr13 66852931 66853118 -35020051 - MER5A DNA MER1_type -6 183 1 279 293 171 8 chr13 66853164 66853373 -35019796 - MLT1J2 LTR MaLR -213 233 2 345 47 0 0 chr13 66853508 66853551 -35019618 + (TG)n Simple_repeat Simple_repeat 2 44 0 1580 153 88 0 chr13 66853631 66853914 -35019255 + AluSg SINE Alu 1 306 0 570 327 43 31 chr13 66854258 66854515 -35018654 - MIR SINE MIR 0 262 3 288 267 12 12 chr13 66854975 66855061 -35018108 + MER58A DNA MER1_type 4 89 -18 3394 134 15 10 chr13 66855100 66855192 -35017977 - MER34B LTR ERV1 -14 693 603 2333 78 3 0 chr13 66855192 66855485 -35017684 + AluY SINE Alu 1 294 -17 3394 134 15 10 chr13 66855485 66855944 -35017225 - MER34B LTR ERV1 -104 603 1 278 235 10 71 chr13 66856068 66856166 -35017003 + MLT1L LTR MaLR 148 239 -376 443 238 94 66 chr13 66856254 66856411 -35016758 + MLT1C LTR MaLR 61 222 -245 360 240 110 20 chr13 66856411 66856557 -35016612 - MER67D LTR ERV1 0 514 356 288 136 15 61 chr13 66856566 66856632 -35016537 - MER67C LTR ERV1 -307 403 341 1249 155 108 36 chr13 66856660 66856938 -35016231 - MER67C LTR ERV1 -344 366 69 319 205 13 0 chr13 66856985 66857063 -35016106 - MER67D LTR ERV1 -431 83 5 461 306 116 9 chr13 66857080 66857296 -35015873 + MLT1C LTR MaLR 229 467 0 273 263 62 12 chr13 66857564 66857644 -35015525 - MER91C DNA MER1_type -25 115 32 263 295 7 36 chr13 66858284 66858423 -35014746 + L1ME LINE L1 4703 4837 -1309 1532 174 3 34 chr13 66858426 66858509 -35014660 + MER49 LTR ERV1 1 85 -838 3079 134 42 49 chr13 66858509 66859123 -35014046 + MER4B LTR ERV1 1 610 0 1532 174 3 34 chr13 66859123 66859333 -35013836 + MER49 LTR ERV1 85 285 -638 1350 257 14 11 chr13 66859363 66859717 -35013452 + MER4D LTR ERV1 549 903 0 1067 245 55 77 chr13 66859744 66860038 -35013131 + L1ME LINE L1 4864 5163 -1003 2004 96 46 11 chr13 66860038 66860320 -35012849 + AluSx SINE Alu 2 293 -19 1067 245 55 77 chr13 66860320 66860765 -35012404 + L1ME LINE L1 5163 5594 -572 573 254 29 46 chr13 66860800 66861040 -35012129 + L1ME LINE L1 5539 5774 -390 1138 128 39 6 chr13 66861144 66861351 -35011818 - AluSg/x SINE Alu 0 311 99 2033 108 29 26 chr13 66861513 66861819 -35011350 + AluSq SINE Alu 2 308 -5 715 346 46 46 chr13 66862334 66862928 -35010241 + L2 LINE L2 2710 3311 -2 563 280 52 26 chr13 66862946 66863139 -35010030 - MIR SINE MIR -1 261 64 31 44 0 0 chr13 66863627 66863672 -35009497 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr13 66864432 66864474 -35008695 + AT_rich Low_complexity Low_complexity 1 42 0 190 358 46 9 chr13 66865523 66865632 -35007537 + L2 LINE L2 2247 2359 -955 280 281 0 12 chr13 66866007 66866089 -35007080 + (CA)n Simple_repeat Simple_repeat 2 82 0 367 345 108 54 chr13 66866122 66866511 -35006658 - L2 LINE L2 0 3313 2904 2418 153 31 5 chr13 66866544 66866961 -35006208 + MSTA LTR MaLR 1 428 0 2028 168 8 0 chr13 66866962 66867319 -35005850 + MSTA-int LTR MaLR 2 361 -1290 2042 152 28 19 chr13 66867319 66867680 -35005489 - THE1B LTR MaLR 0 364 1 10222 119 18 26 chr13 66867680 66869273 -35003896 - THE1C-int LTR MaLR 0 1580 1 2533 118 13 5 chr13 66869273 66869645 -35003524 - THE1C LTR MaLR 0 375 1 1023 86 20 0 chr13 66869645 66869797 -35003372 - THE1C-int LTR MaLR -1425 155 1 1937 143 64 14 chr13 66869797 66870154 -35003015 - THE1C LTR MaLR 0 375 1 189 74 0 0 chr13 66870173 66870200 -35002969 + (TG)n Simple_repeat Simple_repeat 1 27 0 305 264 11 58 chr13 66870223 66870237 -35002932 + (TATG)n Simple_repeat Simple_repeat 1 14 -152 1600 178 35 56 chr13 66870237 66870631 -35002538 - MLT1B LTR MaLR -4 386 1 305 264 11 58 chr13 66870631 66870790 -35002379 + (TATG)n Simple_repeat Simple_repeat 14 166 0 202 333 36 12 chr13 66870830 66870914 -35002255 + MER5A DNA MER1_type 103 188 -1 * 482 348 75 53 chr13 66870914 66871477 -35001692 - L2 LINE L2 -1746 1568 994 279 0 0 0 chr13 66871715 66871746 -35001423 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 250 0 18 chr13 66872911 66872967 -35000202 + CT-rich Low_complexity Low_complexity 3 57 0 535 161 16 57 chr13 66873354 66873478 -34999691 - MLT1E3 LTR MaLR -454 170 52 2227 75 0 7 chr13 66873544 66873837 -34999332 + AluY SINE Alu 4 294 -17 455 258 0 0 chr13 66873840 66873937 -34999232 - MLT2F LTR ERVL -566 97 1 30 45 0 0 chr13 66874638 66874682 -34998487 + AT_rich Low_complexity Low_complexity 1 44 0 26 30 0 0 chr13 66874972 66875005 -34998164 + AT_rich Low_complexity Low_complexity 1 33 0 183 129 32 0 chr13 66875953 66875984 -34997185 + L2 LINE L2 3267 3298 -15 901 342 49 47 chr13 66877063 66877952 -34995217 + ERVL LTR ERVL 1747 2701 -3011 233 218 0 0 chr13 66878246 66878301 -34994868 + L1MC4 LINE L1 6648 6702 -1340 243 0 0 0 chr13 66878307 66878334 -34994835 + (CA)n Simple_repeat Simple_repeat 2 28 0 186 43 0 0 chr13 66878340 66878363 -34994806 + (GA)n Simple_repeat Simple_repeat 1 23 0 857 125 0 0 chr13 66878363 66878483 -34994686 - AluSc SINE Alu -46 263 144 488 327 72 49 chr13 66878569 66878779 -34994390 + ERVL LTR ERVL 4928 5154 -610 2163 90 0 4 chr13 66878779 66879093 -34994076 - AluSc SINE Alu 0 313 1 488 327 72 49 chr13 66879093 66879269 -34993900 + ERVL LTR ERVL 5154 5324 -440 905 121 0 22 chr13 66879328 66879588 -34993581 + THE1C-int LTR MaLR 1245 1580 0 2126 114 67 25 chr13 66879588 66879946 -34993223 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr13 66880903 66880925 -34992244 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr13 66881618 66881656 -34991513 + AT_rich Low_complexity Low_complexity 1 38 0 1381 256 44 81 chr13 66882737 66883257 -34989912 - MLT1F1 LTR MaLR 0 567 67 22 0 0 0 chr13 66883346 66883368 -34989801 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 66883380 66883411 -34989758 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 66884150 66884176 -34988993 + AT_rich Low_complexity Low_complexity 1 26 0 2516 44 0 25 chr13 66885191 66885506 -34987663 + AluY SINE Alu 4 310 -1 628 142 11 19 chr13 66886097 66886273 -34986896 + MER50 LTR ERV1 206 420 -314 * 696 150 8 17 chr13 66886270 66886390 -34986779 + MER50 LTR ERV1 588 706 -28 22 35 0 0 chr13 66886409 66886438 -34986731 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr13 66887382 66887414 -34985755 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr13 66887425 66887460 -34985709 + (CA)n Simple_repeat Simple_repeat 2 36 0 302 284 157 0 chr13 66887583 66887685 -34985484 + MIR SINE MIR 89 206 -56 227 222 0 0 chr13 66887962 66888007 -34985162 + T-rich Low_complexity Low_complexity 1 45 0 2396 92 0 0 chr13 66889793 66890098 -34983071 + AluY SINE Alu 1 305 -6 963 299 50 40 chr13 66890433 66890857 -34982312 - LTR16C LTR ERVL -15 476 49 262 352 14 69 chr13 66890955 66891100 -34982069 - L2 LINE L2 0 3272 3136 1680 181 0 7 chr13 66891184 66891477 -34981692 - AluJb SINE Alu -16 296 6 238 329 99 31 chr13 66891965 66892126 -34981043 + L2 LINE L2 3100 3271 -1 2087 117 0 0 chr13 66892198 66892479 -34980690 - AluSx SINE Alu -22 290 10 303 328 23 35 chr13 66892517 66892688 -34980481 - MIR SINE MIR -74 188 20 21 0 0 0 chr13 66892774 66892795 -34980374 + AT_rich Low_complexity Low_complexity 1 21 0 2088 147 43 22 chr13 66895568 66895983 -34977186 - L1MA9 LINE L1 0 6312 5889 1886 231 41 39 chr13 66895989 66896678 -34976491 - L1MCa LINE L1 -4895 1669 980 342 90 60 0 chr13 66896692 66896759 -34976410 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1705 169 21 61 chr13 66896783 66897162 -34976007 + MLT1A1 LTR MaLR 2 365 0 1249 263 58 61 chr13 66897177 66897939 -34975230 - L1MCa LINE L1 -5096 949 411 877 260 53 51 chr13 66897946 66898461 -34974708 - PABL_B LTR ERV1 0 667 1 1825 196 39 5 chr13 66898478 66898861 -34974308 + Tigger3b DNA MER2_type 20 415 -816 645 261 29 19 chr13 66898908 66899138 -34974031 - L1MCa LINE L1 -5831 343 15 22 0 0 0 chr13 66900124 66900146 -34973023 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 66900495 66900517 -34972652 + AT_rich Low_complexity Low_complexity 1 22 0 578 187 11 13 chr13 66900528 66900695 -34972474 - L1MA9 LINE L1 -245 6057 5877 2882 120 54 60 chr13 66900697 66901212 -34971957 - LTR12 LTR ERV1 -185 529 18 312 91 91 0 chr13 66901212 66901267 -34971902 - L1MA8 LINE L1 -374 5917 5858 26 30 0 0 chr13 66902712 66902745 -34970424 + AT_rich Low_complexity Low_complexity 1 33 0 190 370 0 14 chr13 66905295 66905368 -34967801 - MIR3 SINE MIR -39 169 98 201 191 0 21 chr13 66905444 66905491 -34967678 + CT-rich Low_complexity Low_complexity 4 49 0 1768 154 34 3 chr13 66905539 66905837 -34967332 + AluSx SINE Alu 1 307 -5 34 99 0 0 chr13 66905886 66905997 -34967172 + AT_rich Low_complexity Low_complexity 1 111 0 391 266 38 98 chr13 66906215 66906295 -34966874 + MER69A DNA AcHobo 1 84 -2442 1926 149 3 3 chr13 66906295 66906591 -34966578 - AluSx SINE Alu -16 296 1 391 266 38 98 chr13 66906591 66906694 -34966475 + MER69A DNA AcHobo 84 173 -4 284 334 96 86 chr13 66906968 66907270 -34965899 + L3 LINE CR1 1216 1520 -57 207 0 0 0 chr13 66907593 66907616 -34965553 + (CA)n Simple_repeat Simple_repeat 2 24 0 221 258 0 0 chr13 66908419 66908481 -34964688 + (TTTA)n Simple_repeat Simple_repeat 4 65 0 21 0 0 0 chr13 66909433 66909454 -34963715 + AT_rich Low_complexity Low_complexity 1 21 0 2412 70 0 0 chr13 66909533 66909832 -34963337 - AluY SINE Alu -9 302 4 218 208 0 0 chr13 66910029 66910077 -34963092 + T-rich Low_complexity Low_complexity 1 48 0 263 316 25 0 chr13 66911285 66911364 -34961805 + L2 LINE L2 3190 3270 -2 304 305 152 30 chr13 66912424 66912588 -34960581 + L1MC4a LINE L1 5711 5894 -1914 184 440 41 14 chr13 66912837 66913055 -34960114 + L2 LINE L2 2825 3048 -224 7002 38 0 0 chr13 66913334 66914179 -34958990 - L1PA4 LINE L1 -4 6151 5307 7425 35 0 0 chr13 66913336 66914277 -34958892 - L1PA4 LINE L1 -6 6149 5209 2048 17 0 0 chr13 66914282 66914521 -34958648 + L1P LINE L1 4937 5175 -971 1453 244 64 75 chr13 66914683 66915298 -34957871 + L1M4 LINE L1 4374 4979 -1167 264 30 0 0 chr13 66915298 66915331 -34957838 + (TG)n Simple_repeat Simple_repeat 2 34 0 1453 244 64 75 chr13 66915331 66915513 -34957656 + L1M4 LINE L1 4979 5162 -984 550 253 51 22 chr13 66915750 66915928 -34957241 - MER58A DNA MER1_type 0 224 42 2019 115 48 3 chr13 66917039 66917334 -34955835 + AluSc SINE Alu 1 308 -1 644 246 81 54 chr13 66919763 66920096 -34953073 - L1ME3A LINE L1 -1 6169 5828 1345 198 7 7 chr13 66920237 66920510 -34952659 + AluJo SINE Alu 1 273 -39 1137 242 39 150 chr13 66920577 66921299 -34951870 + MLT2F LTR ERVL 5 646 -17 6623 147 47 6 chr13 66921813 66922751 -34950418 - Tigger3b DNA MER2_type -1798 1230 232 2329 53 0 3 chr13 66922751 66923056 -34950113 - AluY SINE Alu 0 304 1 6623 147 47 6 chr13 66923056 66923298 -34949871 - Tigger3b DNA MER2_type -2796 232 1 456 273 57 43 chr13 66923372 66923581 -34949588 - L1ME3A LINE L1 -41 6129 5918 2294 215 30 44 chr13 66923981 66924605 -34948564 + MLT2B3 LTR ERVL 3 520 0 2792 266 59 7 chr13 66924792 66925672 -34947497 + L1MEc LINE L1 45 970 -5426 1565 238 50 39 chr13 66925744 66926340 -34946829 + L1M4 LINE L1 4195 4797 -1349 229 259 17 0 chr13 66926462 66926520 -34946649 - L2 LINE L2 -69 3244 3186 953 225 135 35 chr13 66927016 66927327 -34945842 - MLT1A2 LTR MaLR 0 374 33 1323 124 153 64 chr13 66927329 66927373 -34945796 - L1PB4 LINE L1 -2 6154 6115 2240 116 3 0 chr13 66927373 66927683 -34945486 - AluSq SINE Alu -2 311 1 1323 124 153 64 chr13 66927683 66927920 -34945249 - L1PB4 LINE L1 -41 6115 5848 23 68 0 0 chr13 66929692 66929736 -34943433 + AT_rich Low_complexity Low_complexity 1 44 0 403 333 29 29 chr13 66929905 66930043 -34943126 + L2 LINE L2 3134 3271 -1 2084 191 55 0 chr13 66931021 66931423 -34941746 - MSTB LTR MaLR 0 426 3 1468 209 3 7 chr13 66931512 66931799 -34941370 + AluJo SINE Alu 6 291 -21 347 277 20 0 chr13 66932894 66932995 -34940174 + L1ME3 LINE L1 3 105 -5965 800 300 145 28 chr13 66933364 66934598 -34938571 + L1ME3 LINE L1 3437 4814 -1266 771 285 64 11 chr13 66934645 66934926 -34938243 + Charlie4a DNA MER1_type 5 300 -208 2285 89 0 16 chr13 66934936 66935251 -34937918 - AluSx SINE Alu -2 310 1 2131 108 7 0 chr13 66935473 66935769 -34937400 - AluSp SINE Alu -15 298 1 1171 285 71 36 chr13 66935770 66936874 -34936295 + L1ME3 LINE L1 4930 6073 -23 203 342 13 25 chr13 66937005 66937084 -34936085 + L3b LINE CR1 1269 1346 -237 21 71 0 0 chr13 66938801 66938843 -34934326 + AT_rich Low_complexity Low_complexity 1 42 0 497 114 0 0 chr13 66939729 66939799 -34933370 + U6 snRNA snRNA 1 70 -37 21 0 0 0 chr13 66939804 66939825 -34933344 + AT_rich Low_complexity Low_complexity 1 21 0 459 241 0 9 chr13 66939928 66940044 -34933125 + L1MC4a LINE L1 5811 5925 -1883 2837 120 31 2 chr13 66940050 66940508 -34932661 - Tigger1 DNA MER2_type -1388 1030 560 21 0 0 0 chr13 66940912 66940933 -34932236 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 66941643 66941664 -34931505 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 66941913 66941941 -34931228 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chr13 66942501 66942552 -34930617 + AT_rich Low_complexity Low_complexity 1 51 0 31 68 0 0 chr13 66944200 66944259 -34928910 + AT_rich Low_complexity Low_complexity 1 59 0 29 0 0 0 chr13 66944474 66944503 -34928666 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr13 66944669 66944707 -34928462 + (CA)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr13 66944987 66945014 -34928155 + AT_rich Low_complexity Low_complexity 1 27 0 728 312 102 41 chr13 66945119 66945660 -34927509 - L2 LINE L2 0 3313 2734 1774 113 68 0 chr13 66945680 66945977 -34927192 - AluSg SINE Alu 0 315 1 38 39 0 0 chr13 66946078 66946130 -34927039 + AT_rich Low_complexity Low_complexity 1 52 0 2259 207 42 12 chr13 66946264 66946834 -34926335 + L1M2 LINE L1 3962 4548 -1598 3482 172 19 47 chr13 66948137 66949244 -34923925 + L1M2 LINE L1 4533 5604 -708 5606 114 45 17 chr13 66949248 66950226 -34922943 + MER11B LTR ERVK 1 1172 -94 2389 83 0 3 chr13 66950574 66950886 -34922283 - AluY SINE Alu 0 311 1 204 219 0 0 chr13 66951467 66951508 -34921661 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 548 352 47 47 chr13 66951928 66952354 -34920815 - L2 LINE L2 -799 2515 2090 426 134 0 15 chr13 66953605 66953672 -34919497 + Tigger2 DNA MER2_type 1 66 -2652 2273 146 52 0 chr13 66953676 66954045 -34919124 + Tigger2 DNA MER2_type 2303 2690 -28 536 260 120 0 chr13 66954794 66954944 -34918225 + MIR SINE MIR 31 198 -64 409 228 8 8 chr13 66955063 66955190 -34917979 + GA-rich Low_complexity Low_complexity 4 130 0 2042 128 7 3 chr13 66955681 66955978 -34917191 - AluSq SINE Alu -15 298 1 441 316 63 8 chr13 66956155 66956392 -34916777 - MIR SINE MIR -5 257 8 231 167 0 0 chr13 66956756 66956798 -34916371 + (TA)n Simple_repeat Simple_repeat 1 42 0 209 307 27 0 chr13 66957155 66957230 -34915939 + GA-rich Low_complexity Low_complexity 1 77 0 346 291 13 13 chr13 66957231 66957382 -34915787 + G-rich Low_complexity Low_complexity 5 155 0 2307 178 14 28 chr13 66958315 66958844 -34914325 + LTR27 LTR ERV1 7 501 0 29 98 0 0 chr13 66959118 66959210 -34913959 + AT_rich Low_complexity Low_complexity 1 92 0 3501 185 42 7 chr13 66959273 66960003 -34913166 - L1MC1 LINE L1 -19 6314 5559 237 156 0 22 chr13 66960006 66960051 -34913118 - MLT2A1 LTR ERVL -8 445 402 32 26 0 0 chr13 66960051 66960090 -34913079 + AT_rich Low_complexity Low_complexity 1 39 0 403 64 127 0 chr13 66960102 66960259 -34912910 + (TA)n Simple_repeat Simple_repeat 2 178 0 54 12 0 48 chr13 66960259 66960343 -34912826 + AT_rich Low_complexity Low_complexity 1 80 0 2575 121 26 5 chr13 66960346 66960735 -34912434 - MLT2A1 LTR ERVL -47 397 1 1768 189 85 38 chr13 66960737 66960978 -34912191 - L1MC1 LINE L1 -743 5403 5175 1923 148 0 10 chr13 66960978 66961275 -34911894 - AluJb SINE Alu -2 310 17 1768 189 85 38 chr13 66961275 66961769 -34911400 - L1MC1 LINE L1 -971 5175 4800 3353 242 121 4 chr13 66962611 66963524 -34909645 + MER45B DNA AcHobo 8 1026 -14 629 278 160 9 chr13 66964779 66965222 -34907947 - L1ME3 LINE L1 -265 5897 5388 2055 112 3 20 chr13 66965254 66965558 -34907611 - AluSg SINE Alu 0 310 12 1749 57 4 13 chr13 66965572 66965802 -34907367 - AluY SINE Alu 0 311 84 426 286 184 37 chr13 66967131 66967425 -34905744 - MLT1I LTR MaLR 0 409 73 467 343 91 49 chr13 66969227 66969635 -34903534 + HAL1 LINE L1 19 443 -2064 365 309 73 71 chr13 66969647 66970126 -34903043 - L2 LINE L2 -1229 2085 1606 302 359 77 10 chr13 66970422 66970631 -34902538 + LTR16C LTR ERVL 71 293 -198 313 284 45 0 chr13 66970691 66970779 -34902390 + LTR16C LTR ERVL 383 474 -17 318 50 0 0 chr13 66970953 66970993 -34902176 + (TG)n Simple_repeat Simple_repeat 2 41 0 278 335 57 13 chr13 66972282 66972440 -34900729 + MIR SINE MIR 97 261 -1 299 289 0 0 chr13 66972445 66972542 -34900627 + (ATG)n Simple_repeat Simple_repeat 2 98 0 1917 142 35 43 chr13 66972665 66973039 -34900130 + THE1C LTR MaLR 1 371 -4 1240 220 32 61 chr13 66973754 66973985 -34899184 - MSTD LTR MaLR -92 304 82 1993 101 14 4 chr13 66973985 66974299 -34898870 - AluSc SINE Alu 0 317 1 1240 220 32 61 chr13 66974299 66974379 -34898790 - MSTD LTR MaLR -314 82 1 22 0 0 0 chr13 66977021 66977043 -34896126 + AT_rich Low_complexity Low_complexity 1 22 0 1937 159 44 56 chr13 66977514 66977922 -34895247 - MER57A LTR ERV1 0 403 1 885 137 0 0 chr13 66978081 66978212 -34894957 + AluSg/x SINE Alu 154 284 -28 31 0 0 0 chr13 66978214 66978245 -34894924 + AT_rich Low_complexity Low_complexity 1 31 0 2567 139 24 2 chr13 66979082 66979498 -34893671 + MER61B LTR ERV1 1 425 0 802 215 86 79 chr13 66979547 66979826 -34893343 + MER21B LTR ERV1 12 292 -571 1170 231 119 32 chr13 66979902 66980213 -34892956 + MER21B LTR ERV1 421 758 -105 437 172 12 141 chr13 66980719 66980882 -34892287 - MLT1I LTR MaLR -11 398 257 213 175 0 0 chr13 66981193 66981233 -34891936 + (TATG)n Simple_repeat Simple_repeat 2 41 0 1494 250 29 46 chr13 66981296 66981540 -34891629 - MER39 LTR ERV1 0 707 460 2777 165 52 99 chr13 66981540 66982309 -34890860 + MER50 LTR ERV1 1 733 -1 1494 250 29 46 chr13 66982309 66982617 -34890552 - MER39 LTR ERV1 -247 460 1 228 370 144 20 chr13 66982903 66983049 -34890120 + L2 LINE L2 3108 3271 -1 23 33 0 0 chr13 66985297 66985327 -34887842 + AT_rich Low_complexity Low_complexity 1 30 0 2237 102 0 3 chr13 66985985 66986289 -34886880 - AluSq SINE Alu -10 303 1 5219 152 36 63 chr13 66986290 66987421 -34885748 - L1MC1 LINE L1 -8 6325 5227 28 48 0 0 chr13 66987657 66987699 -34885470 + AT_rich Low_complexity Low_complexity 1 42 0 319 285 60 20 chr13 66987931 66988082 -34885087 + L1MA10 LINE L1 6175 6331 -3 227 224 13 0 chr13 66989342 66989418 -34883751 + (TA)n Simple_repeat Simple_repeat 2 78 0 912 319 121 25 chr13 66990130 66990798 -34882371 + L2 LINE L2 2151 2882 -432 271 291 137 66 chr13 66990816 66991043 -34882126 - MER70B LTR ERVL -26 552 310 329 314 50 52 chr13 66991520 66991940 -34881229 - MER70-int LTR ERVL -167 4856 4438 2051 92 46 3 chr13 66992348 66992631 -34880538 - AluY SINE Alu -16 295 1 1288 303 40 44 chr13 66992976 66993500 -34879669 - MER70-int LTR ERVL -1495 3528 3007 1588 179 83 187 chr13 66993500 66994474 -34878695 + LTR1B LTR ERV1 1 1020 0 344 368 47 12 chr13 66994474 66994732 -34878437 - MER70-int LTR ERVL -2013 3010 2744 4320 309 47 48 chr13 66995181 66995741 -34877428 - MER70-int LTR ERVL -2292 2731 2172 540 0 0 0 chr13 66995741 66995801 -34877368 + (TTTTA)n Simple_repeat Simple_repeat 4 63 0 4320 309 47 48 chr13 66995801 66995851 -34877318 - MER70-int LTR ERVL -2851 2172 2123 2164 106 0 32 chr13 66995851 66996163 -34877006 - AluSc SINE Alu -6 303 2 4320 309 47 48 chr13 66996163 66997721 -34875448 - MER70-int LTR ERVL -2900 2123 565 186 43 0 0 chr13 66998021 66998044 -34875125 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr13 66999641 66999665 -34873504 + AT_rich Low_complexity Low_complexity 1 24 0 458 286 81 32 chr13 67000456 67000641 -34872528 - MIR SINE MIR -3 259 66 1917 131 0 4 chr13 67002041 67002315 -34870854 + AluSx SINE Alu 1 273 -39 3447 87 25 4 chr13 67002804 67003288 -34869881 - L1PA8A LINE L1 -4 6127 5634 3617 119 41 0 chr13 67003288 67003853 -34869316 + L1P LINE L1 4689 5276 -870 3177 193 198 28 chr13 67004891 67005840 -34867329 + MER52C LTR ERV1 1 1278 0 1676 176 101 4 chr13 67006229 67006592 -34866577 + L1MC1 LINE L1 5354 5749 -464 2588 166 17 0 chr13 67006604 67007073 -34866096 + L1MC1 LINE L1 5857 6333 0 768 205 77 43 chr13 67009171 67009405 -34863764 - MLT1D LTR MaLR 0 505 264 248 93 47 0 chr13 67009414 67009457 -34863712 + CT-rich Low_complexity Low_complexity 2 46 0 2101 123 30 0 chr13 67009460 67009761 -34863408 - AluSg SINE Alu 0 310 1 266 237 0 17 chr13 67009761 67009820 -34863349 - MLT1D LTR MaLR -177 328 271 32 26 0 0 chr13 67009863 67009902 -34863267 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr13 67010592 67010616 -34862553 + AT_rich Low_complexity Low_complexity 1 24 0 1131 266 52 32 chr13 67010848 67011296 -34861873 + MLT1C LTR MaLR 17 467 0 234 231 0 0 chr13 67011385 67011437 -34861732 + (CA)n Simple_repeat Simple_repeat 1 52 0 1638 183 31 10 chr13 67012853 67013142 -34860027 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr13 67013960 67013990 -34859179 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr13 67014234 67014259 -34858910 + AT_rich Low_complexity Low_complexity 1 25 0 4359 135 83 70 chr13 67014343 67015896 -34857273 - pTR5 LTR ERV1 0 2438 69 600 252 0 0 chr13 67016034 67016165 -34857004 + AluJo SINE Alu 1 131 -171 264 200 0 0 chr13 67016174 67016229 -34856940 + GA-rich Low_complexity Low_complexity 2 56 0 948 200 0 6 chr13 67016233 67016393 -34856776 + AluJo SINE Alu 134 292 -20 1920 176 45 3 chr13 67017003 67017338 -34855831 - LTR69 LTR ERVL -1 587 239 833 158 0 15 chr13 67022054 67022187 -34850982 + FLAM_C SINE Alu 1 131 -2 241 235 37 49 chr13 67022310 67022391 -34850778 - MIR SINE MIR -26 236 157 542 325 118 20 chr13 67022399 67022602 -34850567 + MIR SINE MIR 16 238 -24 241 261 45 80 chr13 67022633 67022721 -34850448 - MIR SINE MIR -106 156 72 23 33 0 0 chr13 67022798 67022828 -34850341 + AT_rich Low_complexity Low_complexity 1 30 0 1663 147 27 24 chr13 67022840 67023132 -34850037 + AluJo SINE Alu 9 301 -11 22 0 0 0 chr13 67025060 67025082 -34848087 + AT_rich Low_complexity Low_complexity 1 22 0 1466 224 103 0 chr13 67025230 67025588 -34847581 - MSTD LTR MaLR -1 395 1 402 39 0 0 chr13 67025744 67025796 -34847373 + (CA)n Simple_repeat Simple_repeat 2 53 0 2806 152 15 0 chr13 67025800 67026266 -34846903 - Tigger1 DNA MER2_type -132 2286 1814 416 165 188 0 chr13 67026267 67026352 -34846817 - Tigger1 DNA MER2_type -2317 101 1 478 374 4 28 chr13 67028182 67028355 -34844814 - MIR SINE MIR -2 260 93 2568 124 42 24 chr13 67028355 67028781 -34844388 + MER57B LTR ERV1 1 434 0 478 374 4 28 chr13 67028781 67028856 -34844313 - MIR SINE MIR -169 93 18 1742 185 62 43 chr13 67029082 67029499 -34843670 + MSTB1 LTR MaLR 1 425 -7 2037 130 0 3 chr13 67030005 67030305 -34842864 - AluSg SINE Alu -11 299 1 27 0 0 0 chr13 67030770 67030797 -34842372 + AT_rich Low_complexity Low_complexity 1 27 0 232 233 17 0 chr13 67030879 67030939 -34842230 + (ATG)n Simple_repeat Simple_repeat 1 61 0 453 158 0 0 chr13 67032732 67032814 -34840355 + CT-rich Low_complexity Low_complexity 3 84 0 189 261 22 0 chr13 67032891 67032937 -34840232 - MIR SINE MIR -6 256 210 1163 283 28 44 chr13 67033006 67033507 -34839662 + L1ME3A LINE L1 5478 5970 -200 1833 134 42 0 chr13 67033512 67033795 -34839374 + AluSx SINE Alu 1 295 -17 4020 171 3 3 chr13 67033896 67034613 -34838556 - L1MA4 LINE L1 -2 6298 5582 269 282 339 11 chr13 67035879 67036053 -34837116 + MIR SINE MIR 15 245 -17 31148 110 15 55 chr13 67036819 67039934 -34833235 + L1PA7 LINE L1 13 2724 -3430 2134 114 10 0 chr13 67039934 67040233 -34832936 + AluY SINE Alu 1 302 -9 31148 110 15 55 chr13 67040233 67043521 -34829648 + L1PA7 LINE L1 2724 6143 -11 5389 266 54 25 chr13 67043883 67045895 -34827274 - ERVL LTR ERVL -3604 2160 23 300 53 0 0 chr13 67045981 67046019 -34827150 + (GA)n Simple_repeat Simple_repeat 1 38 0 278 260 21 10 chr13 67046125 67046221 -34826948 + (TA)n Simple_repeat Simple_repeat 2 98 0 22 70 0 0 chr13 67046302 67046345 -34826824 + AT_rich Low_complexity Low_complexity 1 43 0 218 189 11 33 chr13 67047355 67047445 -34825724 + (TA)n Simple_repeat Simple_repeat 1 88 0 409 344 83 52 chr13 67047524 67047983 -34825186 + L1ME LINE L1 5258 5730 -391 236 30 30 0 chr13 67048172 67048205 -34824964 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr13 67049800 67049822 -34823347 + AT_rich Low_complexity Low_complexity 1 22 0 258 179 0 0 chr13 67051295 67051351 -34821818 + (CA)n Simple_repeat Simple_repeat 1 56 0 1406 171 24 0 chr13 67051351 67051603 -34821566 - Tigger2 DNA MER2_type 0 2718 2461 3795 170 9 52 chr13 67051660 67052437 -34820732 - Tigger2 DNA MER2_type -1973 745 2 31 0 0 0 chr13 67052458 67052489 -34820680 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 67053009 67053035 -34820134 + AT_rich Low_complexity Low_complexity 1 26 0 265 89 0 0 chr13 67053471 67053516 -34819653 + L1MA3 LINE L1 6261 6305 0 371 305 43 48 chr13 67054066 67054253 -34818916 - L2 LINE L2 0 3313 3128 190 409 27 13 chr13 67054370 67054519 -34818650 - L2 LINE L2 -360 2954 2804 6015 52 0 1 chr13 67054563 67055315 -34817854 + L1PA5 LINE L1 5402 6152 -2 252 0 0 0 chr13 67055338 67055366 -34817803 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 351 0 0 0 chr13 67055377 67055416 -34817753 + (TG)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chr13 67055434 67055456 -34817713 + (GA)n Simple_repeat Simple_repeat 1 22 0 381 329 169 4 chr13 67055673 67055904 -34817265 - L2 LINE L2 -1086 2228 1960 25 51 0 0 chr13 67055914 67055953 -34817216 + AT_rich Low_complexity Low_complexity 1 39 0 42 36 0 0 chr13 67056321 67056377 -34816792 + AT_rich Low_complexity Low_complexity 1 56 0 261 228 0 0 chr13 67057337 67057394 -34815775 - MER34C LTR ERV1 -465 120 64 2926 179 128 17 chr13 67058081 67058731 -34814438 + MER72 LTR ERV1 1 722 0 456 252 72 0 chr13 67059244 67059355 -34813814 - MER93b-int LTR ERV1 -7289 248 130 699 229 120 86 chr13 67059476 67059826 -34813343 - MER93b LTR ERV1 0 373 12 330 229 89 37 chr13 67059943 67060157 -34813012 - L1MEc LINE L1 -3722 2493 2269 394 261 98 20 chr13 67060176 67060329 -34812840 - L1MEc LINE L1 -4109 2287 2123 189 171 0 0 chr13 67060509 67060544 -34812625 + CT-rich Low_complexity Low_complexity 2 36 0 181 269 60 77 chr13 67060846 67061028 -34812141 + L2 LINE L2 2653 2831 -483 1163 205 8 20 chr13 67061070 67061319 -34811850 - AluJo SINE Alu -66 246 1 29 28 0 0 chr13 67061986 67062022 -34811147 + AT_rich Low_complexity Low_complexity 1 36 0 456 257 49 77 chr13 67063440 67063623 -34809546 + LTR31 LTR ERV1 127 304 -315 225 94 0 0 chr13 67063626 67063658 -34809511 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 494 246 68 82 chr13 67063765 67063985 -34809184 + LTR31 LTR ERV1 378 604 -9 2142 111 0 0 chr13 67064478 67064766 -34808403 + AluSc SINE Alu 1 288 -21 323 190 40 70 chr13 67064944 67065044 -34808125 + LTR29 LTR ERV1 1 97 -525 * 996 207 133 28 chr13 67065013 67065350 -34807819 + MER39 LTR ERV1 257 682 -25 2397 81 0 3 chr13 67065547 67065857 -34807312 - AluY SINE Alu -2 309 1 35 31 0 31 chr13 67066005 67066027 -34807142 + AT_rich Low_complexity Low_complexity 1 22 -40 283 29 0 0 chr13 67066027 67066062 -34807107 + (TTTA)n Simple_repeat Simple_repeat 2 164 0 2069 120 0 0 chr13 67066062 67066346 -34806823 - AluSx SINE Alu -1 318 1 35 31 0 31 chr13 67066346 67066386 -34806783 + AT_rich Low_complexity Low_complexity 20 62 0 545 183 9 0 chr13 67066417 67066532 -34806637 - L1MA4A LINE L1 0 6303 6188 2474 124 20 25 chr13 67066632 67067027 -34806142 + MER57B LTR ERV1 42 434 0 1742 185 62 43 chr13 67067328 67067745 -34805424 + MSTB1 LTR MaLR 1 425 -7 2025 133 0 3 chr13 67068251 67068551 -34804618 - AluSg SINE Alu -11 299 1 35 31 0 31 chr13 67068699 67068721 -34804448 + AT_rich Low_complexity Low_complexity 1 22 -40 2090 120 0 0 chr13 67068721 67069040 -34804129 - AluSx SINE Alu 0 319 1 35 31 0 31 chr13 67069040 67069080 -34804089 + AT_rich Low_complexity Low_complexity 22 62 0 5230 128 11 9 chr13 67069107 67069955 -34803214 - L1MA4A LINE L1 0 6303 5455 2976 148 36 23 chr13 67070100 67070655 -34802514 + MER34B LTR ERV1 1 562 -3 303 71 0 0 chr13 67070929 67070971 -34802198 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 277 303 0 0 chr13 67071936 67072002 -34801167 + MER34 LTR ERV1 1 66 -476 195 42 0 0 chr13 67072102 67072126 -34801043 + (T)n Simple_repeat Simple_repeat 1 24 0 459 194 29 0 chr13 67072173 67072276 -34800893 + LTR48 LTR ERV1 379 484 -303 525 136 23 98 chr13 67072553 67072685 -34800484 - LTR48 LTR ERV1 -488 299 178 1710 179 108 11 chr13 67072685 67072785 -34800384 - MER61C LTR ERV1 0 434 345 186 43 0 0 chr13 67072785 67072808 -34800361 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 1710 179 108 11 chr13 67072808 67073107 -34800062 - MER61C LTR ERV1 -89 345 7 474 195 119 17 chr13 67073141 67073259 -34799910 - LTR48 LTR ERV1 -657 130 1 264 181 84 24 chr13 67073318 67073401 -34799768 + MLT1J1 LTR MaLR 358 445 -1 336 318 23 23 chr13 67073402 67073534 -34799635 - L1ME3A LINE L1 -249 5921 5790 2584 150 60 28 chr13 67073629 67074197 -34798972 + LTR60 LTR ERV1 1 586 0 378 229 115 78 chr13 67074359 67074457 -34798712 + L1M4 LINE L1 2950 3043 -3103 2139 64 0 18 chr13 67074457 67074776 -34798393 + AluY SINE Alu 7 320 0 378 229 115 78 chr13 67074776 67074867 -34798302 + L1M4 LINE L1 3043 3148 -2998 1847 147 4 0 chr13 67074921 67075234 -34797935 + AluSg SINE Alu 1 314 0 2214 50 0 0 chr13 67076112 67076374 -34796795 + AluY SINE Alu 43 304 -7 33 56 0 0 chr13 67076968 67077022 -34796147 + AT_rich Low_complexity Low_complexity 1 54 0 344 260 0 0 chr13 67077106 67077179 -34795990 + Tigger2 DNA MER2_type 1 73 -2645 22 56 0 0 chr13 67079674 67079710 -34793459 + AT_rich Low_complexity Low_complexity 1 36 0 851 274 73 41 chr13 67080386 67081283 -34791886 - L1MCc LINE L1 -5061 1361 47 226 312 135 42 chr13 67082366 67082603 -34790566 + Charlie8 DNA MER1_type 3 261 -2156 227 356 8 53 chr13 67083000 67083132 -34790037 + L2 LINE L2 2928 3053 -219 408 351 95 31 chr13 67083197 67083522 -34789647 - L2 LINE L2 -130 3183 2838 1125 249 97 77 chr13 67084117 67084673 -34788496 - MLT1E LTR MaLR 0 593 1 7227 218 39 68 chr13 67085567 67085922 -34787247 - L1MC1 LINE L1 -37 6576 6212 240 57 491 0 chr13 67085922 67085975 -34787194 - MADE1 DNA Mariner 0 80 2 7227 218 39 68 chr13 67085975 67088926 -34784243 - L1MC1 LINE L1 -401 6212 3341 1782 166 0 7 chr13 67088926 67089236 -34783933 + AluSx SINE Alu 1 308 0 7227 218 39 68 chr13 67089236 67089634 -34783535 - L1MC1 LINE L1 -3272 3341 2933 1452 177 71 17 chr13 67089719 67090131 -34783038 - L1MC1 LINE L1 -3947 2479 2112 809 336 49 21 chr13 67090143 67090568 -34782601 + L1M3d LINE L1 4 440 -5451 666 240 16 26 chr13 67090558 67090750 -34782419 + L1MB1 LINE L1 5884 6073 -95 * 2065 96 7 0 chr13 67091401 67091682 -34781487 - AluY SINE Alu -25 286 4 902 171 19 44 chr13 67091886 67092091 -34781078 + L1MB1 LINE L1 5969 6168 0 479 261 115 6 chr13 67092307 67092472 -34780697 - MIR SINE MIR -2 260 78 3238 224 52 30 chr13 67092825 67092891 -34780278 - L1MB8 LINE L1 -6 6172 6109 722 191 8 0 chr13 67092891 67093022 -34780147 + FLAM_A SINE Alu 2 133 0 3238 224 52 30 chr13 67093022 67094339 -34778830 - L1MB8 LINE L1 -69 6109 4764 370 320 40 0 chr13 67095393 67095518 -34777651 - MIR SINE MIR -96 166 37 24 67 0 0 chr13 67095694 67095739 -34777430 + AT_rich Low_complexity Low_complexity 1 45 0 816 212 71 41 chr13 67096701 67096970 -34776199 - L1MB8 LINE L1 -1542 4604 4328 * 7152 219 60 11 chr13 67096955 67099995 -34773174 - L1PBb LINE L1 -2029 4833 1592 198 71 0 0 chr13 67099995 67100023 -34773146 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7152 219 60 11 chr13 67100023 67100223 -34772946 - L1PBb LINE L1 -5270 1592 1403 455 279 26 13 chr13 67100252 67100406 -34772763 - L1PBb LINE L1 -6705 158 3 22 0 0 0 chr13 67100408 67100430 -34772739 + AT_rich Low_complexity Low_complexity 1 22 0 2197 244 55 23 chr13 67100430 67101180 -34771989 - MER63C DNA MER1_type -150 780 7 189 211 0 0 chr13 67101997 67102049 -34771120 + (TA)n Simple_repeat Simple_repeat 1 52 0 201 158 0 0 chr13 67103531 67103569 -34769600 + T-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr13 67104003 67104027 -34769142 + AT_rich Low_complexity Low_complexity 1 24 0 29 78 0 0 chr13 67104128 67104192 -34768977 + AT_rich Low_complexity Low_complexity 1 64 0 1707 216 10 51 chr13 67104197 67104608 -34768561 + MSTD LTR MaLR 1 394 -2 1432 203 38 7 chr13 67104631 67104921 -34768248 + AluJo SINE Alu 1 299 -13 201 74 0 0 chr13 67105778 67105805 -34767364 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chr13 67105983 67106021 -34767148 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 67106352 67106380 -34766789 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 67106765 67106787 -34766382 + AT_rich Low_complexity Low_complexity 1 22 0 493 326 168 18 chr13 67107213 67107542 -34765627 - LTR16A LTR ERVL -5 446 73 365 311 98 0 chr13 67107656 67107788 -34765381 + LTR16A LTR ERVL 300 444 -6 303 331 57 48 chr13 67107843 67108302 -34764867 + ERVL LTR ERVL 4875 5337 -427 26 50 0 0 chr13 67108497 67108537 -34764632 + AT_rich Low_complexity Low_complexity 1 40 0 13491 148 20 30 chr13 67108601 67111043 -34762126 + Tigger1 DNA MER2_type 1 2417 -1 1639 147 104 23 chr13 67111084 67111253 -34761916 - THE1C LTR MaLR -1 374 220 303 28 0 0 chr13 67111253 67111289 -34761880 + (GA)n Simple_repeat Simple_repeat 1 36 0 1639 147 104 23 chr13 67111289 67111465 -34761704 - THE1C LTR MaLR -155 220 1 247 287 133 88 chr13 67111494 67111916 -34761253 + HAL1 LINE L1 1273 1713 -794 480 35 0 0 chr13 67112278 67112336 -34760833 - L1PA3 LINE L1 -14 6141 6084 1860 271 81 34 chr13 67112770 67113651 -34759518 + L1MCa LINE L1 3 866 -5179 396 229 235 0 chr13 67113649 67113819 -34759350 + L1M4 LINE L1 3625 3834 -2312 * 1868 243 25 59 chr13 67113876 67114550 -34758619 - L1MCb LINE L1 -4895 1150 500 1103 271 22 28 chr13 67114563 67115095 -34758074 - L1MCa LINE L1 -5817 609 4 28 0 0 0 chr13 67115166 67115194 -34757975 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 67115750 67115772 -34757397 + AT_rich Low_complexity Low_complexity 1 22 0 903 148 127 5 chr13 67116018 67116207 -34756962 + L1MA2 LINE L1 6093 6304 0 184 302 19 0 chr13 67116219 67116272 -34756897 - L2 LINE L2 -2350 964 911 304 235 118 0 chr13 67116618 67116737 -34756432 + L1MCa LINE L1 83 215 -6211 21 71 0 0 chr13 67116862 67116904 -34756265 + AT_rich Low_complexity Low_complexity 1 42 0 897 126 0 0 chr13 67117389 67117524 -34755645 - L1MA2 LINE L1 -633 5671 5537 3331 122 8 6 chr13 67117532 67118057 -34755112 + L1MA2 LINE L1 5679 6204 -100 24 32 0 0 chr13 67118306 67118337 -34754832 + AT_rich Low_complexity Low_complexity 1 31 0 180 378 51 32 chr13 67118604 67118760 -34754409 + MIR SINE MIR 2 160 -102 420 313 45 23 chr13 67118775 67118951 -34754218 - MIR SINE MIR -81 181 2 193 337 90 74 chr13 67119295 67119660 -34753509 - L2 LINE L2 -726 2588 2218 209 289 0 0 chr13 67120643 67120695 -34752474 + GA-rich Low_complexity Low_complexity 2 53 0 1294 202 73 118 chr13 67120807 67121341 -34751828 - MLT1E1 LTR MaLR -8 646 137 644 237 15 0 chr13 67121793 67121924 -34751245 - MER5A DNA MER1_type -39 150 18 645 268 118 37 chr13 67122962 67123208 -34749961 - L2 LINE L2 -352 2962 2697 2166 120 0 7 chr13 67124660 67124968 -34748201 + AluSx SINE Alu 1 306 -6 264 30 0 0 chr13 67125372 67125405 -34747764 + (TG)n Simple_repeat Simple_repeat 2 34 0 1129 294 77 31 chr13 67126310 67126827 -34746342 - MLT1H1 LTR MaLR -8 547 7 2051 173 54 29 chr13 67127336 67127853 -34745316 + MLT2A2 LTR ERVL 1 551 -3 202 371 51 17 chr13 67128565 67128740 -34744429 - L2 LINE L2 0 3313 3133 2881 6 0 0 chr13 67128785 67129102 -34744067 + AluYb8 SINE Alu 1 317 -1 209 340 39 10 chr13 67129135 67129238 -34743931 + L2 LINE L2 3167 3272 0 239 397 5 26 chr13 67129499 67129688 -34743481 - L2 LINE L2 -493 2821 2637 26 30 0 0 chr13 67130282 67130315 -34742854 + AT_rich Low_complexity Low_complexity 1 33 0 258 136 0 0 chr13 67130764 67130808 -34742361 + (CA)n Simple_repeat Simple_repeat 2 45 0 2238 78 10 0 chr13 67131410 67131703 -34741466 - AluY SINE Alu -15 296 1 27 0 0 0 chr13 67132944 67132971 -34740198 + AT_rich Low_complexity Low_complexity 1 27 0 2130 96 17 3 chr13 67133087 67133379 -34739790 - AluSg SINE Alu -14 296 1 236 53 26 0 chr13 67133756 67133794 -34739375 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 255 324 136 61 chr13 67134208 67134702 -34738467 + MLT1K LTR MaLR 44 574 -14 2217 82 0 3 chr13 67135065 67135359 -34737810 - AluY SINE Alu -18 293 1 1320 184 4 43 chr13 67135387 67135664 -34737505 - AluJb SINE Alu -46 266 1 5229 173 40 32 chr13 67135664 67136931 -34736238 + L1MC1 LINE L1 5067 6333 0 184 366 37 30 chr13 67136969 67137103 -34736066 - MIR SINE MIR -116 146 12 1781 20 0 0 chr13 67137655 67137854 -34735315 + AluY SINE Alu 99 297 -14 425 222 156 33 chr13 67138020 67138200 -34734969 - L1M4 LINE L1 -1102 5044 4843 186 43 0 0 chr13 67138861 67138884 -34734285 + (A)n Simple_repeat Simple_repeat 1 23 0 1200 235 77 29 chr13 67139563 67139941 -34733228 - MSTD LTR MaLR 0 396 1 258 314 0 0 chr13 67139958 67140028 -34733141 - MIR3 SINE MIR -46 162 93 25 75 0 0 chr13 67140509 67140562 -34732607 + AT_rich Low_complexity Low_complexity 1 53 0 216 182 0 0 chr13 67141657 67141701 -34731468 + (TA)n Simple_repeat Simple_repeat 1 44 0 201 154 0 0 chr13 67142206 67142245 -34730924 + A-rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chr13 67142375 67142424 -34730745 + AT_rich Low_complexity Low_complexity 1 49 0 909 141 7 20 chr13 67142553 67142702 -34730467 - AluSg SINE Alu -163 147 1 328 231 11 44 chr13 67142702 67142793 -34730376 - L1ME LINE L1 -393 5777 5690 255 304 0 0 chr13 67142865 67142934 -34730235 + HERVL40 LTR ERVL 5444 5512 -18 1167 287 61 41 chr13 67142949 67143458 -34729711 + LTR40a LTR ERVL 1 519 0 432 314 78 42 chr13 67143462 67143768 -34729401 - L1MEd LINE L1 -5069 1050 734 287 192 14 0 chr13 67144549 67144622 -34728547 + (TA)n Simple_repeat Simple_repeat 1 74 0 351 396 23 20 chr13 67145239 67145542 -34727627 + HERVL LTR ERVL 3024 3327 -2327 2130 179 41 2 chr13 67145573 67145986 -34727183 + MSTB1 LTR MaLR 3 431 -1 801 345 87 26 chr13 67146308 67147046 -34726123 + HERVL LTR ERVL 3812 4594 -1170 445 348 116 25 chr13 67147096 67147708 -34725461 + HERVL LTR ERVL 4776 5443 -321 305 271 59 0 chr13 67147724 67147809 -34725360 + L1MC4 LINE L1 6614 6703 -1339 27767 32 8 0 chr13 67147913 67152070 -34721099 + L1PA4 LINE L1 1961 6152 -3 252 370 50 8 chr13 67152284 67152403 -34720766 + MIR SINE MIR 13 136 -126 624 226 68 73 chr13 67154797 67155031 -34718138 + MER50-int LTR ERV1 4593 4825 -111 506 163 0 0 chr13 67155418 67155504 -34717665 - L1M3 LINE L1 -383 5785 5700 1847 79 7 65 chr13 67155618 67155945 -34717224 + AluSg SINE Alu 22 332 0 273 182 0 0 chr13 67156600 67156655 -34716514 + (CA)n Simple_repeat Simple_repeat 2 56 0 667 244 10 21 chr13 67156991 67157184 -34715985 + L1M4 LINE L1 4724 4914 -1232 37 0 0 0 chr13 67157414 67157451 -34715718 + AT_rich Low_complexity Low_complexity 1 37 0 391 376 19 6 chr13 67160474 67160636 -34712533 + MIR3 SINE MIR 42 205 -3 22 0 0 0 chr13 67160647 67160669 -34712500 + AT_rich Low_complexity Low_complexity 1 22 0 1511 159 51 9 chr13 67161029 67161344 -34711825 - L1MA6 LINE L1 -4 6296 5969 1328 197 25 0 chr13 67161357 67161631 -34711538 - L1MA6 LINE L1 -862 5284 5004 856 176 10 78 chr13 67161632 67161837 -34711332 + L1MA6 LINE L1 4812 5002 -1144 396 183 7 0 chr13 67162126 67162207 -34710962 + L1MA6 LINE L1 5213 5297 -849 1234 172 25 8 chr13 67162214 67162452 -34710717 + L1MA6 LINE L1 5972 6213 -87 261 0 0 0 chr13 67162521 67162550 -34710619 + (A)n Simple_repeat Simple_repeat 1 29 0 234 243 153 36 chr13 67163451 67163562 -34709607 + L2 LINE L2 3172 3295 -18 193 56 28 28 chr13 67163771 67163807 -34709362 + (CAAAA)n Simple_repeat Simple_repeat 4 39 0 27 0 0 0 chr13 67163819 67163846 -34709323 + AT_rich Low_complexity Low_complexity 1 27 0 282 56 0 0 chr13 67164038 67164074 -34709095 + (CA)n Simple_repeat Simple_repeat 1 36 0 1429 241 117 71 chr13 67166348 67167040 -34706129 + MER50 LTR ERV1 10 733 -1 553 234 32 13 chr13 67168072 67168226 -34704943 + MER103 DNA DNA 3 159 -7 3530 105 29 27 chr13 67168244 67168501 -34704668 - LTR9B LTR ERV1 -83 561 306 2269 99 0 3 chr13 67168501 67168805 -34704364 - AluSq SINE Alu -10 303 1 3530 105 29 27 chr13 67168805 67169107 -34704062 - LTR9B LTR ERV1 -338 306 1 16209 103 21 20 chr13 67169108 67170895 -34702274 - HUERS-P3b LTR ERV1 -7 7411 5544 2433 72 0 7 chr13 67170895 67171199 -34701970 + AluY SINE Alu 1 302 -9 16209 103 21 20 chr13 67171199 67172026 -34701143 - HUERS-P3b LTR ERV1 -1874 5544 4719 1023 90 0 78 chr13 67172025 67172123 -34701046 - HUERS-P3b LTR ERV1 -3544 3874 3792 * 2145 113 3 0 chr13 67172123 67172429 -34700740 + AluSp SINE Alu 1 307 0 1023 90 0 78 chr13 67172429 67172495 -34700674 - HUERS-P3b LTR ERV1 -3626 3792 3722 3681 93 6 19 chr13 67172498 67173024 -34700145 - HUERS-P3b LTR ERV1 -3827 3591 3073 2217 182 31 3 chr13 67173024 67173415 -34699754 + LTR8 LTR ERV1 1 402 -289 686 77 0 0 chr13 67173415 67173506 -34699663 - HUERS-P3b LTR ERV1 -4763 2655 2565 * 4955 111 15 2 chr13 67173503 67174902 -34698267 - HUERS-P3b LTR ERV1 -5126 2292 747 810 103 62 21 chr13 67174908 67175053 -34698116 - HUERS-P3b LTR ERV1 -6859 559 409 335 208 62 62 chr13 67175056 67175152 -34698017 - HUERS-P3b LTR ERV1 -7322 96 1 1403 115 0 0 chr13 67175152 67175352 -34697817 - LTR9B LTR ERV1 0 644 445 1723 119 12 4 chr13 67175412 67175663 -34697506 - AluSx SINE Alu -16 296 44 2281 161 21 30 chr13 67175910 67176344 -34696825 + Tigger2a DNA MER2_type 5 434 0 230 264 42 28 chr13 67176756 67176828 -34696341 - L2 LINE L2 -5 3308 3236 5957 82 157 40 chr13 67177143 67178194 -34694975 + MER11A LTR ERVK 1 1266 0 26 30 0 0 chr13 67179638 67179671 -34693498 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr13 67180099 67180126 -34693043 + AT_rich Low_complexity Low_complexity 1 27 0 423 0 0 0 chr13 67180140 67180187 -34692982 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 472 271 71 18 chr13 67180431 67180601 -34692568 + MLT1I LTR MaLR 1 179 -230 1204 257 23 26 chr13 67181217 67181560 -34691609 + LTR8 LTR ERV1 350 691 0 237 306 87 52 chr13 67182422 67182651 -34690518 - L2 LINE L2 -463 2851 2615 2015 271 90 35 chr13 67183920 67184834 -34688335 - L1MC4 LINE L1 -375 7667 6704 24 32 0 0 chr13 67185010 67185041 -34688128 + AT_rich Low_complexity Low_complexity 1 31 0 870 213 14 5 chr13 67185064 67185271 -34687898 - Tigger7 DNA MER2_type -1 2486 2278 * 981 232 5 10 chr13 67185266 67185464 -34687705 - Tigger7 DNA MER2_type -536 197 1 2837 197 16 24 chr13 67185496 67186131 -34687038 + L1MA7 LINE L1 4702 5331 -815 3669 184 49 1 chr13 67186486 67187273 -34685896 + L1PA13 LINE L1 1532 2367 -4430 * 5163 246 8 41 chr13 67187271 67188585 -34684584 + L1P LINE L1 3220 4490 -1656 1172 183 35 0 chr13 67188588 67188817 -34684352 + L1PA15 LINE L1 5918 6154 -11 2683 7 0 0 chr13 67188837 67189125 -34684044 - AluYa5 SINE Alu -11 300 13 4667 163 34 16 chr13 67189125 67190032 -34683137 + L1MA7 LINE L1 5336 6258 -33 24 0 0 0 chr13 67190043 67190067 -34683102 + AT_rich Low_complexity Low_complexity 1 24 0 1752 228 64 36 chr13 67190227 67190727 -34682442 + MER67D LTR ERV1 1 514 0 309 266 64 0 chr13 67190781 67190875 -34682294 - L1MC5 LINE L1 -589 7372 7273 243 229 0 0 chr13 67190906 67190954 -34682215 + MLT1B LTR MaLR 6 53 -414 496 271 141 41 chr13 67190956 67191339 -34681830 - MER57A LTR ERV1 0 403 16 * 1312 222 1 41 chr13 67191338 67191685 -34681484 + MLT1B LTR MaLR 58 567 0 366 301 18 0 chr13 67191806 67191919 -34681250 + MER5B DNA MER1_type 17 131 -47 335 345 0 0 chr13 67192257 67192373 -34680796 + CT-rich Low_complexity Low_complexity 4 119 0 706 364 79 10 chr13 67193101 67193596 -34679573 + L2 LINE L2 888 1416 -1898 353 393 42 0 chr13 67193828 67194019 -34679150 + MIR3 SINE MIR 2 200 -8 2476 199 11 2 chr13 67194052 67194529 -34678640 + MER31A LTR ERV1 1 481 -4 24 32 0 0 chr13 67195323 67195354 -34677815 + AT_rich Low_complexity Low_complexity 1 31 0 702 228 0 49 chr13 67195471 67195633 -34677536 + FRAM SINE Alu 1 153 -23 1366 221 42 87 chr13 67195824 67196238 -34676931 - MLT1D LTR MaLR 0 505 119 2262 113 0 0 chr13 67196238 67196531 -34676638 - AluSc SINE Alu -16 293 1 1366 221 42 87 chr13 67196531 67196645 -34676524 - MLT1D LTR MaLR -386 119 1 3101 168 44 24 chr13 67196692 67197111 -34676058 + LTR26 LTR ERV1 1 410 -193 2364 114 48 0 chr13 67197111 67197469 -34675700 - THE1C LTR MaLR 0 375 1 8170 136 122 5 chr13 67197472 67198883 -34674286 - THE1C-int LTR MaLR -3 1577 2 2545 125 0 11 chr13 67198884 67199261 -34673908 - THE1C LTR MaLR 0 375 3 3101 168 44 24 chr13 67199261 67199424 -34673745 + LTR26 LTR ERV1 410 601 -2 1083 293 157 21 chr13 67199471 67199993 -34673176 + MLT1E LTR MaLR 1 593 0 1371 203 150 24 chr13 67200616 67200996 -34672173 - MSTA LTR MaLR 0 428 1 9536 148 11 32 chr13 67201001 67202607 -34670562 - THE1C-int LTR MaLR -5 1575 4 1404 161 130 60 chr13 67202614 67202961 -34670208 - THE1C LTR MaLR -4 371 1 1248 278 100 79 chr13 67203170 67204417 -34668752 - L1M4 LINE L1 -5264 1278 5 2388 91 0 0 chr13 67205988 67206296 -34666873 + AluY SINE Alu 1 308 -3 368 231 90 37 chr13 67206519 67206653 -34666516 + MIR SINE MIR 81 221 -41 2286 103 3 0 chr13 67206766 67207067 -34666102 - AluSp SINE Alu -11 302 1 24 0 0 0 chr13 67207778 67207802 -34665367 + AT_rich Low_complexity Low_complexity 1 24 0 225 220 0 0 chr13 67209952 67209973 -34663196 + (CAAA)n Simple_repeat Simple_repeat 3 23 -29 1457 226 0 7 chr13 67209973 67210260 -34662909 + AluJb SINE Alu 1 285 -27 225 220 0 0 chr13 67210260 67210288 -34662881 + (CAAA)n Simple_repeat Simple_repeat 22 52 0 10717 20 0 1 chr13 67210360 67212383 -34660786 - L1PA3 LINE L1 0 6155 4139 4814 38 9 0 chr13 67212384 67212967 -34660202 + L1PA3 LINE L1 3561 4148 -1998 1602 163 6 70 chr13 67213451 67213764 -34659405 + AluJo SINE Alu 3 295 -17 2838 182 49 16 chr13 67215883 67216510 -34656659 - L1MC1 LINE L1 -13 6320 5673 230 240 93 13 chr13 67216754 67216829 -34656340 + MIR SINE MIR 118 198 -64 23 0 0 0 chr13 67218098 67218121 -34655048 + AT_rich Low_complexity Low_complexity 1 23 0 213 214 43 0 chr13 67218759 67218829 -34654340 + (TA)n Simple_repeat Simple_repeat 2 74 0 365 309 60 24 chr13 67220649 67220817 -34652352 + MLT1H1 LTR MaLR 382 555 0 271 311 116 32 chr13 67221772 67221962 -34651207 - MLT1K LTR MaLR -8 580 375 297 296 88 16 chr13 67222020 67222145 -34651024 - MER5B DNA MER1_type -11 167 34 1901 102 11 11 chr13 67222857 67223121 -34650048 - AluSx SINE Alu -15 297 34 262 267 17 0 chr13 67223941 67224001 -34649168 + MER5A DNA MER1_type 128 188 -1 450 0 0 0 chr13 67224343 67224393 -34648776 + (TG)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr13 67224622 67224644 -34648525 + AT_rich Low_complexity Low_complexity 1 22 0 371 229 193 67 chr13 67224839 67225141 -34648028 + L1MD3 LINE L1 7414 7858 -66 180 0 0 0 chr13 67225162 67225182 -34647987 + (T)n Simple_repeat Simple_repeat 1 20 0 24 67 0 0 chr13 67225442 67225487 -34647682 + AT_rich Low_complexity Low_complexity 1 45 0 454 165 0 0 chr13 67225685 67225770 -34647399 + L1MA3 LINE L1 6221 6305 0 257 284 187 17 chr13 67226671 67226907 -34646262 - L2 LINE L2 -172 3141 2860 391 245 59 114 chr13 67227347 67227584 -34645585 + L1M4 LINE L1 652 875 -5667 3093 138 90 12 chr13 67227773 67228376 -34644793 + L1MA4 LINE L1 5644 6293 -7 295 113 163 0 chr13 67228383 67228463 -34644706 + L1ME1 LINE L1 5149 5241 -905 1565 272 114 18 chr13 67228511 67229176 -34643993 + L1ME1 LINE L1 5437 6165 -1 656 253 40 30 chr13 67229677 67229875 -34643294 + MER3 DNA MER1_type 2 201 -8 1275 177 4 17 chr13 67231070 67231307 -34641862 - Tigger5 DNA MER2_type -1 2322 2089 228 323 0 0 chr13 67231326 67231388 -34641781 - Tigger5 DNA MER2_type -2261 62 1 303 274 60 83 chr13 67232405 67232573 -34640596 - L1MC5 LINE L1 -807 7154 6991 189 0 0 0 chr13 67232623 67232644 -34640525 + (CA)n Simple_repeat Simple_repeat 1 21 0 297 283 10 10 chr13 67232662 67232761 -34640408 - L1MC4 LINE L1 -1011 7031 6933 795 261 19 14 chr13 67232795 67233002 -34640167 - MLT1A2 LTR MaLR 0 374 167 357 253 105 79 chr13 67233019 67233054 -34640115 - L1ME3A LINE L1 -2 6168 6135 4873 129 18 12 chr13 67233054 67233874 -34639295 + L1MA3 LINE L1 5478 6302 -3 357 253 105 79 chr13 67233874 67234067 -34639102 - L1ME3A LINE L1 -35 6135 5934 716 157 15 8 chr13 67234151 67234285 -34638884 - MLT1A2 LTR MaLR -230 135 1 256 323 80 17 chr13 67234302 67234494 -34638675 - L1MC5 LINE L1 -1067 6741 6590 1204 316 58 5 chr13 67235029 67235200 -34637969 - L1MC5 LINE L1 -1865 5943 5783 180 0 0 0 chr13 67235200 67235220 -34637949 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1204 316 58 5 chr13 67235220 67235463 -34637706 - L1MC5 LINE L1 -2025 5783 5507 1776 187 48 6 chr13 67235868 67236199 -34636970 + MLT1A1 LTR MaLR 21 365 0 312 360 35 40 chr13 67236475 67236675 -34636494 + L1MEc LINE L1 55 253 -6143 1339 238 44 17 chr13 67237379 67237741 -34635428 - MER21B LTR ERV1 -61 802 431 235 179 339 0 chr13 67237741 67237797 -34635372 - MER21B LTR ERV1 -559 304 230 289 211 39 0 chr13 67237979 67238031 -34635138 - MER21B LTR ERV1 -778 85 32 32 43 0 0 chr13 67238169 67238215 -34634954 + AT_rich Low_complexity Low_complexity 1 46 0 759 205 79 37 chr13 67239901 67240091 -34633078 - MER3 DNA MER1_type -8 201 4 381 333 23 23 chr13 67240222 67240396 -34632773 + MIR SINE MIR 3 176 -86 4249 209 14 50 chr13 67240419 67241435 -34631734 - L1MA10 LINE L1 -17 6317 5368 2126 79 3 33 chr13 67241435 67241598 -34631571 - AluY SINE Alu -17 294 143 189 0 0 0 chr13 67241598 67241619 -34631550 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 2126 79 3 33 chr13 67241619 67241758 -34631411 - AluY SINE Alu -168 143 1 4249 209 14 50 chr13 67241758 67242323 -34630846 - L1MA10 LINE L1 -966 5368 4785 22 0 0 0 chr13 67242655 67242677 -34630492 + AT_rich Low_complexity Low_complexity 1 22 0 197 297 31 0 chr13 67243677 67243741 -34629428 - MIR SINE MIR -118 144 79 21 0 0 0 chr13 67243942 67243963 -34629206 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 67244683 67244706 -34628463 + AT_rich Low_complexity Low_complexity 1 23 0 666 246 0 0 chr13 67245208 67245346 -34627823 - MER106B DNA MER1_type -921 138 1 1225 326 68 44 chr13 67245348 67246373 -34626796 + L2 LINE L2 2206 3252 -61 184 151 19 19 chr13 67246499 67246552 -34626617 + GA-rich Low_complexity Low_complexity 2 54 0 222 150 0 0 chr13 67246591 67246631 -34626538 + (TG)n Simple_repeat Simple_repeat 2 41 0 3033 239 81 45 chr13 67246736 67247977 -34625192 + L1MC3 LINE L1 6250 7534 -251 640 121 10 0 chr13 67247982 67248081 -34625088 - L1MA4 LINE L1 -856 5435 5336 * 4236 191 35 4 chr13 67248065 67248886 -34624283 + L1MA4 LINE L1 5414 6260 -40 697 227 81 46 chr13 67248914 67249174 -34623995 + L1MD3 LINE L1 7726 7994 -1 181 326 102 53 chr13 67249175 67249362 -34623807 - L2 LINE L2 -196 3117 2922 24 0 0 0 chr13 67249500 67249524 -34623645 + AT_rich Low_complexity Low_complexity 1 24 0 2205 86 0 0 chr13 67249524 67249815 -34623354 - AluSq SINE Alu -22 291 1 846 206 7 129 chr13 67250715 67250987 -34622182 + AluJo SINE Alu 6 244 -68 501 287 15 36 chr13 67250992 67251187 -34621982 - L1MD3 LINE L1 -82 7913 7723 360 181 0 0 chr13 67251184 67251256 -34621913 - L1MA4A LINE L1 -23 6280 6209 * 40 21 0 0 chr13 67251273 67251320 -34621849 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr13 67251453 67251485 -34621684 + AT_rich Low_complexity Low_complexity 1 32 0 2389 79 0 3 chr13 67252089 67252393 -34620776 - AluSq SINE Alu -9 304 2 243 263 18 0 chr13 67252467 67252524 -34620645 - MIR SINE MIR -64 144 87 22 0 0 0 chr13 67252825 67252847 -34620322 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr13 67252922 67252976 -34620193 + AT_rich Low_complexity Low_complexity 1 54 0 9916 55 13 1 chr13 67253229 67254494 -34618675 - L1P LINE L1 -4289 1857 578 792 61 0 0 chr13 67254461 67254559 -34618610 - L1P LINE L1 -6048 98 1 * 306 321 38 15 chr13 67255086 67255217 -34617952 + MIR SINE MIR 74 207 -55 247 197 53 26 chr13 67255361 67255437 -34617732 + T-rich Low_complexity Low_complexity 2 79 0 22 0 0 0 chr13 67255493 67255515 -34617654 + AT_rich Low_complexity Low_complexity 1 22 0 255 61 0 0 chr13 67256691 67256724 -34616445 + (CA)n Simple_repeat Simple_repeat 2 34 0 373 240 27 87 chr13 67258046 67258196 -34614973 + L1MA2 LINE L1 11 151 -7414 2502 64 0 3 chr13 67258199 67258511 -34614658 - AluY SINE Alu 0 311 1 10329 167 20 21 chr13 67258627 67261495 -34611674 + L1MA2 LINE L1 4639 7508 -215 370 145 0 16 chr13 67261526 67261588 -34611581 - THE1-int LTR MaLR -516 1064 1004 2286 113 0 0 chr13 67262366 67262675 -34610494 + AluSg SINE Alu 1 309 -1 2055 121 3 16 chr13 67263675 67263989 -34609180 + AluSq SINE Alu 1 310 -3 222 320 82 0 chr13 67265572 67265669 -34607500 - MIR SINE MIR -111 151 47 233 197 26 120 chr13 67265783 67265900 -34607269 + L1M4 LINE L1 2849 2954 -3192 2829 186 56 2 chr13 67265903 67266461 -34606708 - MER67C LTR ERV1 0 710 123 338 298 51 31 chr13 67266650 67266942 -34606227 + L1M4 LINE L1 2974 3271 -2875 226 47 70 23 chr13 67266995 67267038 -34606131 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 300 342 66 13 chr13 67267043 67267195 -34605974 + L1M4 LINE L1 3364 3523 -2623 245 139 0 0 chr13 67267225 67267261 -34605908 + L1M4 LINE L1 3608 3643 -2503 * 345 237 141 0 chr13 67267256 67267391 -34605778 + L1M4 LINE L1 3875 4028 -2118 1704 199 4 61 chr13 67268075 67268562 -34604607 + MER89 LTR ERV1 3 559 0 314 269 89 23 chr13 67270651 67270888 -34602281 - L1M LINE L1 -789 5375 5121 207 0 0 0 chr13 67270924 67270947 -34602222 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 403 301 117 34 chr13 67271006 67271272 -34601897 - L1ME3A LINE L1 -33 6137 5850 558 344 8 16 chr13 67371379 67371632 -34501537 + L2 LINE L2 1575 1825 -1489 304 292 43 77 chr13 67371663 67371872 -34501297 + L2 LINE L2 3112 3313 0 181 356 18 54 chr13 67371896 67372118 -34501051 + L2 LINE L2 2499 2712 -602 255 283 47 28 chr13 67373564 67373670 -34499499 - L2 LINE L2 -2 3311 3204 4386 188 55 23 chr13 67374001 67375299 -34497870 - L1PA16 LINE L1 -21 6145 4797 22 0 0 0 chr13 67375552 67375574 -34497595 + AT_rich Low_complexity Low_complexity 1 22 0 5919 120 38 1 chr13 67375732 67376664 -34496505 - L1PA8 LINE L1 -1451 4695 3730 6781 76 4 8 chr13 67376667 67378139 -34495030 + L1PA8 LINE L1 4703 6172 0 23 0 0 0 chr13 67378162 67378185 -34494984 + AT_rich Low_complexity Low_complexity 1 23 0 1067 126 63 5 chr13 67378271 67378462 -34494707 - L1MA3 LINE L1 -319 5986 5785 1819 135 15 12 chr13 67378463 67378789 -34494380 + L1MA3 LINE L1 5979 6305 0 476 286 48 95 chr13 67379122 67379521 -34493648 - L1M4 LINE L1 -2877 3269 2890 243 278 0 0 chr13 67379689 67379761 -34493408 - MLT1I LTR MaLR -20 389 318 38 39 0 0 chr13 67380149 67380201 -34492968 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr13 67380788 67380809 -34492360 + AT_rich Low_complexity Low_complexity 1 21 0 188 33 0 33 chr13 67381041 67381071 -34492098 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1014 289 92 10 chr13 67381350 67381765 -34491404 + L1MCb LINE L1 1 449 -5596 253 316 77 0 chr13 67381795 67381912 -34491257 + L1MCb LINE L1 729 854 -5710 1210 195 55 50 chr13 67382021 67382437 -34490732 + L1MCb LINE L1 2195 2612 -3952 385 248 95 22 chr13 67382411 67382779 -34490390 + L1MB1 LINE L1 5463 5618 -946 * 257 262 16 0 chr13 67382922 67382983 -34490186 + AluJ/FLAM SINE Alu 2 63 -239 6489 58 20 44 chr13 67383118 67384095 -34489074 - SVA Other Other 0 1386 433 1521 108 13 76 chr13 67384115 67384578 -34488591 - SVA Other Other -520 866 433 5529 72 35 52 chr13 67384591 67385613 -34487556 - SVA Other Other -518 868 1 293 316 35 18 chr13 67386120 67386291 -34486878 + L3b LINE CR1 1103 1276 -307 233 286 0 87 chr13 67386753 67386879 -34486290 + L1P5 LINE L1 5614 5728 -423 25 0 0 0 chr13 67386955 67386980 -34486189 + AT_rich Low_complexity Low_complexity 1 25 0 287 164 55 5 chr13 67388171 67388261 -34484908 + L1MB1 LINE L1 6078 6175 -2 560 317 100 27 chr13 67389128 67389459 -34483710 + L1M3a LINE L1 1 355 -5600 1747 192 18 3 chr13 67389471 67389810 -34483359 + L1MA9 LINE L1 5481 5824 -488 631 211 14 21 chr13 67389811 67389953 -34483216 + FRAM SINE Alu 1 140 -36 2452 179 10 24 chr13 67389958 67390466 -34482703 + L1MA9 LINE L1 5811 6311 -1 3915 25 11 0 chr13 67390701 67391335 -34481834 + L1P1 LINE L1 4917 5554 -601 318 338 86 25 chr13 67391551 67391749 -34481420 - HAL1 LINE L1 -861 1646 1437 21 0 0 0 chr13 67391809 67391830 -34481339 + AT_rich Low_complexity Low_complexity 1 21 0 333 68 0 0 chr13 67391895 67391939 -34481230 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 24 53 0 0 chr13 67392390 67392428 -34480741 + AT_rich Low_complexity Low_complexity 1 38 0 22 88 0 0 chr13 67393837 67393894 -34479275 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr13 67394196 67394218 -34478951 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 67395446 67395467 -34477702 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 67396122 67396155 -34477014 + AT_rich Low_complexity Low_complexity 1 33 0 471 291 89 71 chr13 67396257 67396708 -34476461 + L1MEc LINE L1 953 1411 -4985 1455 96 5 0 chr13 67398353 67398551 -34474618 + HERVH LTR ERV1 4580 4778 -2935 24 0 0 0 chr13 67398582 67398606 -34474563 + AT_rich Low_complexity Low_complexity 1 24 0 524 311 64 70 chr13 67398941 67399314 -34473855 - HERVL40 LTR ERVL -2603 2927 2557 778 307 38 38 chr13 67399314 67399656 -34473513 - HERVL40 LTR ERVL -3139 2391 2050 * 885 299 47 20 chr13 67399655 67400056 -34473113 - HERVL40 LTR ERVL -3913 1617 1206 825 109 75 54 chr13 67400091 67400238 -34472931 - L1PA8A LINE L1 -2 6129 5980 3307 114 4 8 chr13 67400246 67400755 -34472414 + L1P LINE L1 3533 4039 -2107 298 269 46 19 chr13 67401182 67401290 -34471879 - HERVL40 LTR ERVL -5410 120 10 497 296 73 8 chr13 67401298 67401758 -34471411 - LTR40a LTR ERVL 0 519 1 319 299 11 0 chr13 67401849 67401936 -34471233 + LTR16A LTR ERVL 234 321 -129 180 0 0 0 chr13 67401936 67401956 -34471213 + (T)n Simple_repeat Simple_repeat 1 20 0 1264 192 7 45 chr13 67402071 67402357 -34470812 - AluJb SINE Alu -4 308 34 556 33 43 11 chr13 67402800 67402892 -34470277 + (TA)n Simple_repeat Simple_repeat 1 95 0 25 51 0 0 chr13 67403297 67403336 -34469833 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr13 67404078 67404106 -34469063 + AT_rich Low_complexity Low_complexity 1 28 0 924 60 16 49 chr13 67404784 67404892 -34468277 + (TTTC)n Simple_repeat Simple_repeat 1 283 0 924 60 16 49 chr13 67404892 67405077 -34468092 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 207 114 0 0 chr13 67405158 67405193 -34467976 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1455 154 0 45 chr13 67405208 67405455 -34467714 - AluSx SINE Alu -59 253 18 27 29 0 0 chr13 67406001 67406035 -34467134 + AT_rich Low_complexity Low_complexity 1 34 0 27 103 0 0 chr13 67406948 67407045 -34466124 + AT_rich Low_complexity Low_complexity 1 97 0 286 204 32 43 chr13 67408465 67408558 -34464611 + L1MEd LINE L1 1072 1163 -4956 701 159 87 0 chr13 67409303 67409429 -34463740 - AluJb SINE Alu -171 141 5 207 196 0 39 chr13 67409493 67409544 -34463625 - L3 LINE CR1 -1347 230 182 2755 126 18 11 chr13 67409639 67410076 -34463093 - MER83 LTR ERV1 -8 440 1 295 273 61 30 chr13 67410737 67410869 -34462300 - L1ME3A LINE L1 -99 6071 5936 182 215 0 15 chr13 67410876 67410941 -34462228 + (TA)n Simple_repeat Simple_repeat 2 65 0 185 154 26 0 chr13 67411082 67411121 -34462048 + (TA)n Simple_repeat Simple_repeat 2 41 0 253 322 0 0 chr13 67411123 67411213 -34461956 - L1MC4 LINE L1 -1339 6703 6614 * 260 318 0 0 chr13 67411135 67411223 -34461946 + L1MC4 LINE L1 6614 6701 -1341 383 233 10 0 chr13 67411223 67411326 -34461843 + (TA)n Simple_repeat Simple_repeat 1 104 0 216 304 107 18 chr13 67412983 67413095 -34460074 + MIR SINE MIR 35 156 -106 3842 164 17 19 chr13 67413358 67414060 -34459109 + MER50 LTR ERV1 11 711 -23 192 288 0 34 chr13 67414250 67414309 -34458860 + MIR SINE MIR 59 115 -147 1676 198 20 9 chr13 67414640 67414983 -34458186 - MER4D LTR ERV1 0 903 557 1226 202 201 26 chr13 67415430 67415816 -34457353 + LTR49 LTR ERV1 87 515 -80 2063 154 69 0 chr13 67416012 67416389 -34456780 - MER57A LTR ERV1 0 403 1 1891 123 67 0 chr13 67417034 67417319 -34455850 - AluSq SINE Alu -9 304 1 21 0 0 0 chr13 67417826 67417847 -34455322 + AT_rich Low_complexity Low_complexity 1 21 0 2194 160 8 0 chr13 67418102 67418465 -34454704 - MER47A DNA MER2_type 0 366 1 263 274 127 53 chr13 67418692 67418937 -34454232 + MER46C DNA MER2_type 38 300 -38 222 180 0 33 chr13 67419251 67419312 -34453857 + A-rich Low_complexity Low_complexity 3 61 0 663 339 82 9 chr13 67419406 67419736 -34453433 - L2 LINE L2 -5 3308 2955 220 348 14 0 chr13 67419737 67419806 -34453363 + MIR SINE MIR 5 74 -188 222 240 248 8 chr13 67420059 67420188 -34452981 + MIR SINE MIR 88 247 -15 443 253 32 86 chr13 67420331 67420467 -34452702 - L2 LINE L2 -438 2876 2751 2214 70 21 0 chr13 67420467 67420753 -34452416 - AluSc SINE Alu -17 292 1 443 253 32 86 chr13 67420753 67420802 -34452367 - L2 LINE L2 -563 2751 2701 264 274 161 21 chr13 67421053 67421250 -34451919 - MLT1H1 LTR MaLR -32 535 287 210 71 0 0 chr13 67421583 67421611 -34451558 + (T)n Simple_repeat Simple_repeat 1 28 0 2149 63 10 27 chr13 67421635 67421935 -34451234 - AluY SINE Alu -16 295 1 22 35 0 0 chr13 67422159 67422188 -34450981 + AT_rich Low_complexity Low_complexity 1 29 0 1940 136 7 27 chr13 67423268 67423569 -34449600 + AluSg SINE Alu 1 295 -15 1587 243 57 26 chr13 67423779 67424269 -34448900 - MLT1D LTR MaLR 0 505 1 273 128 0 0 chr13 67426379 67426426 -34446743 + (TC)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr13 67426426 67426459 -34446710 + (CA)n Simple_repeat Simple_repeat 1 33 0 270 267 8 99 chr13 67426557 67426688 -34446481 + L2 LINE L2 3185 3303 -10 29 47 0 0 chr13 67427952 67427995 -34445174 + AT_rich Low_complexity Low_complexity 1 43 0 2044 87 6 72 chr13 67428581 67428902 -34444267 + AluSx SINE Alu 7 306 -6 421 246 0 8 chr13 67430951 67431073 -34442096 - L1P LINE L1 -1708 4438 4318 5046 169 8 7 chr13 67431214 67432162 -34441007 - L1P LINE L1 -1358 4788 3840 3438 120 50 14 chr13 67432164 67432932 -34440237 + L1PA13 LINE L1 5019 5819 -344 743 104 0 0 chr13 67432934 67433040 -34440129 + L1PA13 LINE L1 6054 6159 -4 38 66 0 28 chr13 67433047 67433153 -34440016 + AT_rich Low_complexity Low_complexity 1 103 0 24 0 0 0 chr13 67433578 67433602 -34439567 + AT_rich Low_complexity Low_complexity 1 24 0 1655 218 104 61 chr13 67433942 67434113 -34439056 - L1MEc LINE L1 -3907 2633 2471 1292 196 36 0 chr13 67434113 67434389 -34438780 - L1PB4 LINE L1 -5 6151 5866 1655 218 104 61 chr13 67434389 67435007 -34438162 - L1MEc LINE L1 -4069 2471 1810 1596 169 8 54 chr13 67435014 67435376 -34437793 - MER4A LTR ERV1 0 664 261 251 250 7 14 chr13 67435441 67435581 -34437588 - L1MEc LINE L1 -4741 1832 1665 401 302 94 39 chr13 67435851 67436159 -34437010 + L1M4 LINE L1 4734 5058 -1088 1047 120 49 5 chr13 67436595 67436779 -34436390 - L1MA1 LINE L1 -5 7716 7525 282 229 49 0 chr13 67436978 67437039 -34436130 - L1 LINE L1 -1172 4974 4911 * 4165 178 33 34 chr13 67437037 67438295 -34434874 - L1MA1 LINE L1 -633 7090 5838 4339 225 103 105 chr13 67438296 67440055 -34433114 - MER52A LTR ERV1 0 1755 1 9041 195 23 14 chr13 67440055 67443196 -34429973 - L1MA1 LINE L1 -1725 5840 2671 1592 186 29 37 chr13 67443196 67443572 -34429597 + THE1C LTR MaLR 1 373 -2 3423 114 8 76 chr13 67443574 67444169 -34429000 + THE1C-int LTR MaLR 1 555 -1025 273 339 9 9 chr13 67444169 67444278 -34428891 - L2 LINE L2 -923 2391 2283 26 101 0 0 chr13 67446111 67446200 -34426969 + AT_rich Low_complexity Low_complexity 1 89 0 2091 100 0 24 chr13 67446288 67446578 -34426591 - AluSq SINE Alu -30 283 1 404 300 64 50 chr13 67447462 67447682 -34425487 - LTR16C LTR ERVL -24 467 245 3039 163 70 25 chr13 67448728 67449423 -34423746 - LTR8A LTR ERV1 0 727 1 833 214 17 0 chr13 67449423 67449596 -34423573 - L1PB4 LINE L1 -29 6127 5952 2024 107 36 8 chr13 67449598 67449987 -34423182 - LTR7 LTR ERV1 0 450 1 291 184 40 26 chr13 67449987 67450063 -34423106 - L1PB4 LINE L1 -201 5955 5879 * 385 229 0 0 chr13 67450058 67450141 -34423028 - L1PB4 LINE L1 -178 5978 5896 355 192 13 13 chr13 67450151 67450229 -34422940 - L1PB4 LINE L1 -184 5972 5895 306 285 68 41 chr13 67450327 67450548 -34422621 + Charlie7 DNA MER1_type 291 517 -2095 2643 148 40 9 chr13 67450845 67451290 -34421879 - MER50 LTR ERV1 -33 701 243 1226 113 15 36 chr13 67451291 67451486 -34421683 - LTR8 LTR ERV1 -175 516 326 1610 117 8 32 chr13 67451488 67451735 -34421434 - MER50 LTR ERV1 -483 251 11 363 211 53 90 chr13 67451857 67452086 -34421083 - L1MEc LINE L1 -3864 2351 2128 2736 83 95 0 chr13 67452086 67452495 -34420674 - LTR7 LTR ERV1 -2 448 1 363 211 53 90 chr13 67452495 67452506 -34420663 - L1MEc LINE L1 -4087 2128 2118 1916 112 51 45 chr13 67452507 67452863 -34420306 - HERVH LTR ERV1 -34 7679 7322 1383 134 19 0 chr13 67452861 67453077 -34420092 - HERVH LTR ERV1 -1894 5819 5600 * 8098 118 4 4 chr13 67453078 67454800 -34418369 - HERVH LTR ERV1 -1866 5225 3492 * 19747 104 54 32 chr13 67454790 67458011 -34415158 - HERVH LTR ERV1 -4423 3290 1 2883 73 93 0 chr13 67458013 67458423 -34414746 - LTR7 LTR ERV1 -2 448 1 459 269 71 63 chr13 67458773 67459234 -34413935 - L1MEc LINE L1 -835 1741 1229 345 286 72 89 chr13 67459436 67459796 -34413373 - L1ME4a LINE L1 -158 6381 6028 286 316 35 18 chr13 67460253 67460424 -34412745 - L3b LINE CR1 -307 1276 1103 261 262 16 0 chr13 67461003 67461064 -34412105 - AluJ/FLAM SINE Alu -239 63 2 343 240 97 24 chr13 67461207 67461575 -34411594 - L1ME4a LINE L1 -946 5618 5463 * 1196 192 55 50 chr13 67461549 67461965 -34411204 - L1ME4a LINE L1 -3952 2612 2195 249 316 77 0 chr13 67462074 67462191 -34410978 - L1ME4a LINE L1 -5710 854 729 1047 294 87 9 chr13 67462198 67462636 -34410533 - L1ME4a LINE L1 -5573 472 1 188 33 0 33 chr13 67462914 67462944 -34410225 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr13 67463176 67463197 -34409972 + AT_rich Low_complexity Low_complexity 1 21 0 38 39 0 0 chr13 67463784 67463836 -34409333 + AT_rich Low_complexity Low_complexity 1 52 0 236 278 0 0 chr13 67464224 67464296 -34408873 + MLT1I LTR MaLR 318 389 -20 268 276 0 0 chr13 67464487 67464563 -34408606 + L1ME3A LINE L1 2915 2990 -3156 250 324 28 0 chr13 67464845 67464953 -34408216 + GA-rich Low_complexity Low_complexity 2 112 0 1833 138 12 12 chr13 67465196 67465523 -34407646 - L1MA3 LINE L1 0 6305 5979 1078 124 6 6 chr13 67465524 67465701 -34407468 + L1MA3 LINE L1 5785 5961 -344 23 0 0 0 chr13 67465802 67465825 -34407344 + AT_rich Low_complexity Low_complexity 1 23 0 6699 75 0 22 chr13 67465848 67467334 -34405835 - L1PA8 LINE L1 0 6172 4703 5896 120 38 1 chr13 67467337 67468269 -34404900 + L1PA8 LINE L1 3730 4695 -1451 2046 265 83 73 chr13 67468355 67469745 -34403424 + L1ME3A LINE L1 3747 5170 -1000 195 69 0 0 chr13 67469745 67469774 -34403395 + (TG)n Simple_repeat Simple_repeat 1 29 0 2046 265 83 73 chr13 67469774 67470693 -34402476 + L1ME3A LINE L1 5170 6078 -92 597 286 42 18 chr13 67470693 67471100 -34402069 + LTR40c LTR ERVL 1 515 -4 259 156 22 0 chr13 67471100 67471145 -34402024 + HERVL40 LTR ERVL 9 54 -5476 367 347 14 7 chr13 67471666 67471813 -34401356 + HERVL40 LTR ERVL 568 715 -4815 1642 289 6 29 chr13 67472408 67472886 -34400283 + HERVL40 LTR ERVL 2720 3186 -2344 940 304 3 14 chr13 67472877 67473170 -34399999 + HERVL40 LTR ERVL 3123 3412 -2118 * 755 331 29 11 chr13 67473765 67474046 -34399123 + HERVL40 LTR ERVL 5236 5521 -9 370 327 32 16 chr13 67474052 67474463 -34398706 + LTR40b LTR ERVL 1 438 -24 22 0 0 0 chr13 67475093 67475115 -34398054 + AT_rich Low_complexity Low_complexity 1 22 0 33 80 0 0 chr13 67475248 67475323 -34397846 + AT_rich Low_complexity Low_complexity 1 75 0 2761 256 48 3 chr13 67475433 67476356 -34396813 + L1MC2 LINE L1 4342 5305 -841 1428 111 0 10 chr13 67476384 67476592 -34396577 + L1PA15 LINE L1 5960 6165 0 869 284 26 26 chr13 67476595 67476944 -34396225 + L1MC4 LINE L1 7694 8042 0 243 239 0 28 chr13 67477642 67477713 -34395456 - L1ME4a LINE L1 -93 6028 5960 3218 195 97 28 chr13 67477760 67478413 -34394756 + L1MC2 LINE L1 5470 6192 -152 3949 141 22 0 chr13 67478413 67479039 -34394130 + L1PA15 LINE L1 5524 6163 -2 3218 195 97 28 chr13 67479039 67479202 -34393967 + L1MC2 LINE L1 6192 6342 -2 27 0 0 0 chr13 67479218 67479245 -34393924 + AT_rich Low_complexity Low_complexity 1 27 0 1208 170 46 6 chr13 67479245 67479568 -34393601 - L1MA9 LINE L1 -22 6290 5858 2849 199 83 27 chr13 67479586 67479715 -34393454 + L1MB8 LINE L1 5355 5475 -703 1490 199 17 14 chr13 67479715 67480012 -34393157 + AluJb SINE Alu 1 298 -14 2849 199 83 27 chr13 67480012 67480662 -34392507 + L1MB8 LINE L1 5475 6178 0 426 53 0 0 chr13 67480854 67480911 -34392258 + (TG)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr13 67482071 67482095 -34391074 + AT_rich Low_complexity Low_complexity 1 24 0 27 29 0 0 chr13 67485141 67485175 -34387994 + AT_rich Low_complexity Low_complexity 1 34 0 244 359 70 0 chr13 67485981 67486123 -34387046 - L2 LINE L2 -556 2758 2607 40 49 0 0 chr13 67486294 67486355 -34386814 + AT_rich Low_complexity Low_complexity 1 61 0 2017 174 0 64 chr13 67486357 67486445 -34386724 - MER47B DNA MER2_type -1942 381 289 261 0 0 0 chr13 67486445 67486474 -34386695 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 1755 177 0 0 chr13 67486475 67486757 -34386412 - AluSx SINE Alu -30 282 1 2017 174 0 64 chr13 67486757 67487073 -34386096 - MER47B DNA MER2_type -2033 290 1 4979 209 24 12 chr13 67487091 67488291 -34384878 - L1PA16 LINE L1 -838 5308 4095 5335 148 6 1 chr13 67488292 67489144 -34384025 + L1PA16 LINE L1 5310 6165 -1 284 328 179 20 chr13 67489273 67489575 -34383594 - Charlie7 DNA MER1_type -2135 477 128 191 356 0 0 chr13 67489666 67489725 -34383444 - L2 LINE L2 -803 2511 2453 389 196 93 56 chr13 67490013 67490120 -34383049 + MLT1B LTR MaLR 5 115 -275 936 217 86 12 chr13 67490338 67490582 -34382587 + MLT1B LTR MaLR 129 390 0 46 33 0 0 chr13 67492259 67492319 -34380850 + AT_rich Low_complexity Low_complexity 1 60 0 403 229 46 13 chr13 67492476 67492629 -34380540 + (TA)n Simple_repeat Simple_repeat 1 158 0 586 144 0 0 chr13 67493526 67493623 -34379546 - AluS SINE Alu -216 97 1 752 313 42 24 chr13 67493687 67494021 -34379148 + MER92A LTR ERV1 1 340 -72 1558 234 78 14 chr13 67494021 67494070 -34379099 - MSTD LTR MaLR 0 396 352 531 0 0 0 chr13 67494070 67494129 -34379040 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 1558 234 78 14 chr13 67494129 67494438 -34378731 - MSTD LTR MaLR -44 352 15 438 129 0 0 chr13 67494456 67494526 -34378643 + MER92A LTR ERV1 343 412 0 2278 135 22 0 chr13 67494607 67494963 -34378206 + THE1B LTR MaLR 1 364 0 9962 132 11 29 chr13 67494963 67496565 -34376604 + THE1B-int LTR MaLR 1 1574 -6 2021 143 43 6 chr13 67496570 67496921 -34376248 + THE1B LTR MaLR 1 364 0 26 64 0 0 chr13 67496977 67497024 -34376145 + AT_rich Low_complexity Low_complexity 1 47 0 1465 239 26 23 chr13 67497419 67497770 -34375399 - MLT1A1 LTR MaLR -10 355 4 25 0 0 0 chr13 67497884 67497909 -34375260 + AT_rich Low_complexity Low_complexity 1 25 0 2317 143 6 8 chr13 67499244 67499608 -34373561 - THE1B LTR MaLR 0 364 2 2993 122 53 13 chr13 67499609 67500083 -34373086 - THE1B-int LTR MaLR 0 1580 1088 875 140 14 0 chr13 67500083 67500226 -34372943 - THE1B-int LTR MaLR -1435 145 1 2245 149 8 6 chr13 67500226 67500589 -34372580 - THE1B LTR MaLR 0 364 1 604 313 42 10 chr13 67500599 67501067 -34372102 + L1ME LINE L1 850 1225 -4888 207 0 0 0 chr13 67501117 67501140 -34372029 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 34263 35 4 0 chr13 67501144 67506121 -34367048 - L1PA4 LINE L1 -3 6152 1160 669 313 47 55 chr13 67506143 67506850 -34366319 + L1ME LINE L1 1435 2135 -4261 2282 160 48 12 chr13 67507242 67507655 -34365514 - MSTA LTR MaLR 0 428 1 1997 128 3 13 chr13 67508654 67508959 -34364210 - AluSx SINE Alu -10 302 1 2030 165 55 36 chr13 67510271 67510808 -34362361 + MLT2A2 LTR ERVL 1 554 0 524 311 94 4 chr13 67510822 67511099 -34362070 - L1ME LINE L1 -5373 697 396 21 57 0 0 chr13 67512169 67512204 -34360965 + AT_rich Low_complexity Low_complexity 1 35 0 1606 124 48 80 chr13 67513150 67513507 -34359662 - MER4A LTR ERV1 0 664 261 511 162 10 20 chr13 67513507 67513606 -34359563 - MER4A LTR ERV1 -566 98 1 207 0 0 0 chr13 67514088 67514111 -34359058 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr13 67515450 67515472 -34357697 + AT_rich Low_complexity Low_complexity 1 22 0 3836 223 75 11 chr13 67515567 67516545 -34356624 + Tigger6a DNA MER2_type 14 1053 -30 1759 83 0 4 chr13 67516756 67516985 -34356184 + AluSq SINE Alu 83 310 -3 1299 236 78 47 chr13 67518422 67518909 -34354260 - MLT1D LTR MaLR -3 502 1 23 33 0 0 chr13 67520700 67520730 -34352439 + AT_rich Low_complexity Low_complexity 1 30 0 3350 125 17 35 chr13 67520806 67521341 -34351828 + L1PA7 LINE L1 9 533 -5928 19389 99 7 4 chr13 67521342 67525035 -34348134 + L1PA7 LINE L1 2762 6463 -6 2345 54 0 7 chr13 67525198 67525495 -34347674 - AluY SINE Alu -16 295 1 201 175 0 0 chr13 67527168 67527208 -34345961 + GA-rich Low_complexity Low_complexity 4 43 0 355 269 310 37 chr13 67527674 67528080 -34345089 - MER52A LTR ERV1 -18 1737 1221 993 254 295 39 chr13 67528213 67528470 -34344699 - MER52A LTR ERV1 -466 1289 1099 2448 61 0 6 chr13 67528470 67528781 -34344388 - AluY SINE Alu -2 309 1 993 254 295 39 chr13 67528781 67529031 -34344138 - MER52A LTR ERV1 -656 1099 652 27 49 0 0 chr13 67529118 67529159 -34344010 + AT_rich Low_complexity Low_complexity 1 41 0 348 394 55 25 chr13 67529199 67529562 -34343607 + L1MEc LINE L1 70 443 -5953 2105 114 3 10 chr13 67530142 67530448 -34342721 + AluSp SINE Alu 1 304 -9 25 75 0 0 chr13 67530868 67530921 -34342248 + AT_rich Low_complexity Low_complexity 1 53 0 689 222 141 27 chr13 67531506 67531691 -34341478 - MER58 DNA MER1_type -2213 207 2 26 50 0 0 chr13 67532185 67532225 -34340944 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr13 67533200 67533243 -34339926 + AT_rich Low_complexity Low_complexity 1 43 0 438 235 51 0 chr13 67533556 67533654 -34339515 + FLAM_C SINE Alu 25 127 -16 644 191 9 0 chr13 67533852 67533957 -34339212 - FLAM_A SINE Alu -20 122 17 322 94 31 0 chr13 67533995 67534059 -34339110 + (TA)n Simple_repeat Simple_repeat 1 66 0 215 348 177 25 chr13 67535174 67535332 -34337837 + L2 LINE L2 2628 2809 -505 376 336 84 49 chr13 67535848 67536398 -34336771 - L2 LINE L2 -191 3081 2434 263 250 0 0 chr13 67536527 67536583 -34336586 + Tigger5 DNA MER2_type 2265 2320 -3 22 0 0 0 chr13 67536745 67536767 -34336402 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr13 67536824 67536860 -34336309 + AT_rich Low_complexity Low_complexity 1 36 0 315 0 0 0 chr13 67536991 67537026 -34336143 + (TA)n Simple_repeat Simple_repeat 2 36 0 201 128 85 0 chr13 67537251 67537298 -34335871 + (TTTAA)n Simple_repeat Simple_repeat 3 53 0 23 33 0 0 chr13 67537493 67537523 -34335646 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr13 67538349 67538381 -34334788 + AT_rich Low_complexity Low_complexity 1 32 0 255 283 47 28 chr13 67538669 67538775 -34334394 + L2 LINE L2 3204 3311 -2 1717 132 18 7 chr13 67539893 67540174 -34332995 + AluJb SINE Alu 11 294 -18 626 359 44 34 chr13 67540207 67540770 -34332399 + L1PA13 LINE L1 788 1356 -6218 349 307 0 0 chr13 67540947 67541048 -34332121 + L1PA13 LINE L1 2084 2184 -5397 10358 244 34 45 chr13 67541324 67545056 -34328113 + L1PA13 LINE L1 2182 5846 -1738 1744 159 88 25 chr13 67545056 67545409 -34327760 - THE1C LTR MaLR 0 375 1 10358 244 34 45 chr13 67545409 67545992 -34327177 + L1PA13 LINE L1 5846 6434 -1150 1493 192 21 4 chr13 67545994 67546275 -34326894 + AluJo SINE Alu 6 291 -21 998 119 0 0 chr13 67546283 67546417 -34326752 + AluSq/x SINE Alu 3 136 -176 35 63 0 0 chr13 67546690 67546753 -34326416 + AT_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr13 67546875 67546905 -34326264 + AT_rich Low_complexity Low_complexity 1 30 0 201 74 0 0 chr13 67547249 67547276 -34325893 + (TTAGGG)n Simple_repeat Simple_repeat 4 30 0 21 0 0 0 chr13 67547579 67547600 -34325569 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 67547935 67547963 -34325206 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr13 67548218 67548259 -34324910 + AT_rich Low_complexity Low_complexity 1 41 0 226 50 50 0 chr13 67549696 67549736 -34323433 + (TA)n Simple_repeat Simple_repeat 2 43 0 2698 206 12 2 chr13 67550165 67550743 -34322426 - L1MC1 LINE L1 -19 6314 5731 33 66 0 0 chr13 67551610 67551671 -34321498 + AT_rich Low_complexity Low_complexity 1 61 0 231 388 10 10 chr13 67551975 67552073 -34321096 + MIR SINE MIR 37 134 -128 22 0 0 0 chr13 67552111 67552133 -34321036 + AT_rich Low_complexity Low_complexity 1 22 0 2258 76 0 10 chr13 67553185 67553486 -34319683 + AluY SINE Alu 1 298 -13 345 280 90 38 chr13 67554033 67554322 -34318847 + HAL1 LINE L1 1316 1619 -888 26 0 0 0 chr13 67554749 67554775 -34318394 + AT_rich Low_complexity Low_complexity 1 26 0 1507 180 76 0 chr13 67554868 67555157 -34318012 - AluJb SINE Alu -1 311 1 354 320 102 35 chr13 67555420 67555704 -34317465 + L1M4 LINE L1 3055 3357 -2789 832 256 47 57 chr13 67555955 67556477 -34316692 + LTR28 LTR ERV1 1 491 -10 23 54 0 0 chr13 67556577 67556614 -34316555 + AT_rich Low_complexity Low_complexity 1 37 0 6455 130 15 19 chr13 67556614 67557946 -34315223 - L1MA3 LINE L1 -3 6302 4977 695 315 34 15 chr13 67557936 67558260 -34314909 + L1M4 LINE L1 3733 4062 -2084 * 247 221 95 63 chr13 67558335 67558430 -34314739 + LTR48 LTR ERV1 163 260 -527 1937 287 62 31 chr13 67558795 67560037 -34313132 + L1M4 LINE L1 4051 5330 -816 561 42 96 12 chr13 67560062 67560228 -34312941 + (TA)n Simple_repeat Simple_repeat 1 180 0 230 385 0 0 chr13 67561807 67561903 -34311266 - MIR SINE MIR -166 96 1 256 321 44 58 chr13 67561938 67562075 -34311094 - MIR SINE MIR -121 141 7 678 207 0 0 chr13 67563091 67563231 -34309938 - L1MA6 LINE L1 -7 6293 6154 23 33 0 0 chr13 67563640 67563670 -34309499 + AT_rich Low_complexity Low_complexity 1 30 0 255 245 0 0 chr13 67564023 67564117 -34309052 + CT-rich Low_complexity Low_complexity 1 94 0 216 100 0 25 chr13 67564351 67564391 -34308778 + (CGG)n Simple_repeat Simple_repeat 3 41 0 3011 172 43 15 chr13 67565145 67565732 -34307437 - MER6A DNA MER2_type -1 604 2 996 126 52 16 chr13 67565796 67565987 -34307182 + L1MA3 LINE L1 6107 6304 -1 2324 79 0 7 chr13 67566005 67566309 -34306860 + AluY SINE Alu 1 302 -9 1030 217 5 0 chr13 67566466 67566683 -34306486 + L1 LINE L1 4125 4342 -1804 33 43 0 0 chr13 67567102 67567149 -34306020 + AT_rich Low_complexity Low_complexity 1 47 0 297 258 84 78 chr13 67567592 67567759 -34305410 - L2 LINE L2 -33 3280 3113 1585 254 55 5 chr13 67567816 67568238 -34304931 + MLT1C LTR MaLR 1 443 -24 613 331 78 59 chr13 67568307 67568448 -34304721 - L2 LINE L2 -339 2975 2838 4006 120 29 23 chr13 67568448 67569108 -34304061 + MER4A LTR ERV1 1 664 0 613 331 78 59 chr13 67569108 67569725 -34303444 - L2 LINE L2 -476 2838 2203 341 364 102 41 chr13 67570023 67570317 -34302852 - L2 LINE L2 -349 2965 2654 384 218 91 27 chr13 67570597 67570707 -34302462 + MER63 DNA MER1_type 1 743 -93 26 50 0 0 chr13 67571035 67571075 -34302094 + AT_rich Low_complexity Low_complexity 1 40 0 29 0 0 0 chr13 67571144 67571173 -34301996 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 67571343 67571378 -34301791 + AT_rich Low_complexity Low_complexity 1 35 0 203 133 0 0 chr13 67572197 67572227 -34300942 + (TG)n Simple_repeat Simple_repeat 1 30 0 28 91 0 0 chr13 67573267 67573344 -34299825 + AT_rich Low_complexity Low_complexity 1 77 0 243 354 0 0 chr13 67574125 67574244 -34298925 + GA-rich Low_complexity Low_complexity 4 192 0 409 298 22 44 chr13 67574327 67574365 -34298804 + MIR SINE MIR 86 123 -139 2115 108 0 3 chr13 67574365 67574686 -34298483 - AluY SINE Alu 0 311 1 409 298 22 44 chr13 67574686 67574828 -34298341 + MIR SINE MIR 123 262 0 1908 174 23 46 chr13 67576109 67576661 -34296508 - MER51A LTR ERV1 0 634 1 23 78 0 0 chr13 67577337 67577388 -34295781 + AT_rich Low_complexity Low_complexity 1 51 0 30 0 0 0 chr13 67577489 67577519 -34295650 + AT_rich Low_complexity Low_complexity 1 30 0 4102 156 23 25 chr13 67577788 67578575 -34294594 + LTR1 LTR ERV1 1 785 0 247 396 7 7 chr13 67578796 67578940 -34294229 + L1MEc LINE L1 177 320 -6076 876 299 55 39 chr13 67579100 67579950 -34293219 + L1MEc LINE L1 1996 2822 -3393 679 164 16 16 chr13 67580047 67580169 -34293000 + FRAM SINE Alu 23 144 -32 338 321 0 0 chr13 67580196 67580280 -34292889 + MER5A DNA MER1_type 106 189 0 26 0 0 0 chr13 67580614 67580640 -34292529 + AT_rich Low_complexity Low_complexity 1 26 0 429 269 40 26 chr13 67581505 67581688 -34291481 - MLT1J2 LTR MaLR 0 446 264 222 347 99 0 chr13 67582337 67582458 -34290711 + MIR SINE MIR 69 201 -61 259 261 91 0 chr13 67582486 67582574 -34290595 + L2 LINE L2 2204 2299 -1015 226 233 31 16 chr13 67583503 67583632 -34289537 + CT-rich Low_complexity Low_complexity 2 132 0 553 278 89 35 chr13 67583632 67583891 -34289278 + MLT1K LTR MaLR 288 560 -28 381 300 42 74 chr13 67583916 67584110 -34289059 - MIR SINE MIR -62 200 6 186 224 0 0 chr13 67584192 67584241 -34288928 + GA-rich Low_complexity Low_complexity 3 51 0 21 57 0 0 chr13 67584312 67584347 -34288822 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr13 67584964 67584994 -34288175 + AT_rich Low_complexity Low_complexity 1 30 0 341 350 15 10 chr13 67585054 67585251 -34287918 + L2 LINE L2 2218 2415 -899 192 40 0 0 chr13 67585565 67585590 -34287579 + (TG)n Simple_repeat Simple_repeat 1 25 0 1715 179 12 19 chr13 67585899 67586224 -34286945 - MER54B LTR ERVL -3 790 468 225 0 0 0 chr13 67586229 67586254 -34286915 + (CA)n Simple_repeat Simple_repeat 1 25 0 2605 191 73 2 chr13 67586267 67586732 -34286437 - MER54B LTR ERVL -295 498 1 743 350 86 28 chr13 67586950 67587415 -34285754 + LTR33 LTR ERVL 11 502 -19 1389 303 16 27 chr13 67587679 67588230 -34284939 - MLT1H LTR MaLR 0 549 5 22 0 0 0 chr13 67589142 67589164 -34284005 + AT_rich Low_complexity Low_complexity 1 22 0 227 290 55 82 chr13 67589248 67589686 -34283483 - L1MC5 LINE L1 -224 7737 7312 528 299 113 39 chr13 67589697 67590158 -34283011 - L1MC4 LINE L1 -573 7469 6975 22 0 0 0 chr13 67590419 67590441 -34282728 + AT_rich Low_complexity Low_complexity 1 22 0 709 248 122 50 chr13 67590949 67591348 -34281821 + LTR9B LTR ERV1 206 625 0 309 51 0 0 chr13 67591818 67591857 -34281312 + (CA)n Simple_repeat Simple_repeat 2 40 0 2155 250 69 45 chr13 67591885 67592833 -34280336 + L1 LINE L1 15 939 -6098 1622 149 40 4 chr13 67592833 67593139 -34280030 + AluSx SINE Alu 1 316 0 2155 250 69 45 chr13 67593139 67593601 -34279568 + L1 LINE L1 939 2492 -4545 878 295 4 0 chr13 67593601 67593872 -34279297 + L1 LINE L1 4495 4766 -2340 2306 93 0 7 chr13 67594032 67594333 -34278836 + AluSq SINE Alu 1 299 -14 494 213 65 58 chr13 67595157 67595312 -34277857 - FRAM SINE Alu -19 157 2 27 0 0 0 chr13 67595678 67595705 -34277464 + AT_rich Low_complexity Low_complexity 1 27 0 586 185 0 42 chr13 67596549 67596668 -34276501 + LTR9 LTR ERV1 1 114 -498 429 269 40 26 chr13 67597260 67597443 -34275726 + MLT1J2 LTR MaLR 264 446 0 26 0 0 0 chr13 67598308 67598334 -34274835 + AT_rich Low_complexity Low_complexity 1 26 0 338 321 0 0 chr13 67598668 67598752 -34274417 - MER5A DNA MER1_type 0 189 106 679 164 16 16 chr13 67598779 67598901 -34274268 - FRAM SINE Alu -32 144 23 1335 283 47 71 chr13 67598998 67600980 -34272189 - L1ME LINE L1 -3393 3251 1247 235 392 14 7 chr13 67601371 67601514 -34271655 - L1ME LINE L1 -6076 749 606 2386 40 0 20 chr13 67601892 67602189 -34270980 + AluY SINE Alu 1 291 -20 34 24 0 0 chr13 67602216 67602257 -34270912 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr13 67602467 67602506 -34270663 + AT_rich Low_complexity Low_complexity 1 39 0 2267 234 54 35 chr13 67603249 67604624 -34268545 - L1MC3 LINE L1 -745 5401 4442 330 356 117 30 chr13 67605291 67605659 -34267510 + L2 LINE L2 2369 2768 -546 212 313 71 9 chr13 67605704 67605816 -34267353 + MIR SINE MIR 59 177 -85 215 203 51 13 chr13 67606099 67606178 -34266991 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 21 36 0 0 chr13 67608866 67608894 -34264275 + AT_rich Low_complexity Low_complexity 1 28 0 262 253 104 35 chr13 67609053 67609255 -34263914 - L1MC5 LINE L1 -33 7928 7713 21 0 0 0 chr13 67609298 67609319 -34263850 + AT_rich Low_complexity Low_complexity 1 21 0 1598 62 5 0 chr13 67610261 67610472 -34262697 + L1PA5 LINE L1 5939 6150 -4 574 290 59 6 chr13 67611710 67611879 -34261290 + MIR SINE MIR 2 179 -83 22 35 0 0 chr13 67613265 67613294 -34259875 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr13 67613488 67613519 -34259650 + AT_rich Low_complexity Low_complexity 1 31 0 358 228 13 0 chr13 67613549 67613628 -34259541 - L1MA7 LINE L1 -812 5479 5400 * 3470 145 37 52 chr13 67613626 67613926 -34259243 + L1MA7 LINE L1 5492 5795 -496 225 0 0 0 chr13 67613926 67613951 -34259218 + (CA)n Simple_repeat Simple_repeat 2 26 0 3470 145 37 52 chr13 67613951 67614376 -34258793 + L1MA7 LINE L1 5795 6206 -85 17032 219 47 44 chr13 67614378 67621078 -34252091 + L1M1 LINE L1 203 6903 -743 4864 135 26 11 chr13 67621115 67621967 -34251202 + L1MA3 LINE L1 5438 6302 -3 24 32 0 0 chr13 67621967 67621998 -34251171 + AT_rich Low_complexity Low_complexity 1 31 0 550 311 23 18 chr13 67622156 67622375 -34250794 - MER58A DNA MER1_type -4 220 1 25 0 0 0 chr13 67622936 67622961 -34250208 + AT_rich Low_complexity Low_complexity 1 25 0 261 297 70 8 chr13 67623040 67623168 -34250001 - MIR SINE MIR -2 260 125 5145 164 53 33 chr13 67623612 67624982 -34248187 + L1PA16 LINE L1 4764 6166 0 1715 88 13 9 chr13 67625650 67625876 -34247293 + AluSc SINE Alu 1 227 -82 23 0 0 0 chr13 67625937 67625960 -34247209 + AT_rich Low_complexity Low_complexity 1 23 0 295 356 14 50 chr13 67626249 67626471 -34246698 - L2 LINE L2 -602 2712 2499 337 317 27 48 chr13 67626495 67626681 -34246488 - L2 LINE L2 0 3313 3132 654 303 18 25 chr13 67626734 67627011 -34246158 - L2 LINE L2 -1489 1825 1551 409 306 7 0 chr13 67627180 67627324 -34245845 - Zaphod DNA AcHobo -27 4004 3860 774 168 0 0 chr13 67627324 67627455 -34245714 + L1MA2 LINE L1 6091 6221 -83 461 164 6 11 chr13 67627487 67627585 -34245584 + L1MA2 LINE L1 6204 6305 0 654 238 66 138 chr13 67627655 67627897 -34245272 - Zaphod DNA AcHobo -731 3300 3042 2124 112 0 3 chr13 67627897 67628212 -34244957 - AluSg SINE Alu 0 314 1 654 238 66 138 chr13 67628212 67628954 -34244215 - Zaphod DNA AcHobo -989 3042 2385 * 1113 287 77 15 chr13 67628923 67629446 -34243723 - Zaphod DNA AcHobo -3249 782 228 243 0 0 0 chr13 67629455 67629482 -34243687 + (TC)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr13 67629481 67629508 -34243661 + (TG)n Simple_repeat Simple_repeat 2 28 0 236 329 12 0 chr13 67629527 67629609 -34243560 - Zaphod DNA AcHobo -3940 91 9 21 0 0 0 chr13 67629997 67630018 -34243151 + AT_rich Low_complexity Low_complexity 1 21 0 2398 48 0 3 chr13 67631809 67632099 -34241070 + AluY SINE Alu 1 289 -22 22 0 0 0 chr13 67633616 67633638 -34239531 + AT_rich Low_complexity Low_complexity 1 22 0 240 111 0 0 chr13 67635273 67635309 -34237860 + (GGA)n Simple_repeat Simple_repeat 3 38 0 24 67 0 0 chr13 67635478 67635523 -34237646 + AT_rich Low_complexity Low_complexity 1 45 0 2479 155 3 0 chr13 67635648 67636394 -34236775 - L1PB1 LINE L1 -550 5601 4854 843 72 44 122 chr13 67636394 67636575 -34236594 + L1PB1 LINE L1 5629 5795 -356 443 118 39 34 chr13 67636576 67636754 -34236415 + (TA)n Simple_repeat Simple_repeat 2 180 0 2148 142 8 8 chr13 67636773 67637146 -34236023 + L1PB1 LINE L1 5776 6148 -3 409 374 60 15 chr13 67637176 67637441 -34235728 - LTR33 LTR ERVL -244 277 1 209 320 10 41 chr13 67637507 67637604 -34235565 + L2 LINE L2 3174 3267 -5 465 336 79 29 chr13 67637618 67637933 -34235236 + L3 LINE CR1 1232 1562 -15 1227 229 34 58 chr13 67639106 67639479 -34233690 - MER39 LTR ERV1 0 707 343 2906 165 65 24 chr13 67639479 67640067 -34233102 - LTR9 LTR ERV1 0 612 1 1227 229 34 58 chr13 67640067 67640104 -34233065 - MER39 LTR ERV1 -364 343 307 295 213 112 101 chr13 67640079 67640248 -34232921 - LTR48B LTR ERV1 -473 171 1 * 1159 198 31 5 chr13 67640891 67641113 -34232056 - AluJo SINE Alu -82 230 3 2068 105 7 14 chr13 67642025 67642321 -34230848 - AluSq SINE Alu -2 311 18 967 238 29 7 chr13 67644448 67644729 -34228440 - L1 LINE L1 -3153 2993 2707 * 2607 146 88 65 chr13 67644721 67645310 -34227859 + L1PB4 LINE L1 5543 6145 -11 30 0 0 0 chr13 67645310 67645340 -34227829 + AT_rich Low_complexity Low_complexity 1 30 0 2438 120 19 16 chr13 67645693 67646061 -34227108 - THE1C LTR MaLR 0 375 7 713 315 178 12 chr13 67646208 67646691 -34226478 - L2 LINE L2 -773 2541 1979 3339 195 48 53 chr13 67646695 67646827 -34226342 + L1MB2 LINE L1 5196 5327 -844 1908 132 60 23 chr13 67646827 67647176 -34225993 - THE1B LTR MaLR 0 364 3 3339 195 48 53 chr13 67647176 67647651 -34225518 + L1MB2 LINE L1 5327 5802 -369 360 0 0 0 chr13 67647651 67647691 -34225478 + (TA)n Simple_repeat Simple_repeat 1 40 0 3339 195 48 53 chr13 67647691 67648006 -34225163 + L1MB2 LINE L1 5802 6117 -54 270 89 22 22 chr13 67648026 67648071 -34225098 + MER4A LTR ERV1 54 98 -566 1632 148 5 74 chr13 67648071 67648442 -34224727 + MER4A LTR ERV1 261 664 0 252 127 32 32 chr13 67648442 67648505 -34224664 + L1MB2 LINE L1 6109 6171 0 574 257 68 55 chr13 67648523 67648760 -34224409 - L2 LINE L2 -1340 1974 1735 1354 133 9 14 chr13 67648787 67648997 -34224172 - THE1B-int LTR MaLR -121 1459 1251 206 228 0 0 chr13 67649012 67649069 -34224100 + (TA)n Simple_repeat Simple_repeat 1 57 0 347 302 182 26 chr13 67649083 67649275 -34223894 - L2 LINE L2 -1678 1636 1415 1249 247 84 52 chr13 67649802 67650300 -34222869 + MER67D LTR ERV1 1 514 0 22 35 0 0 chr13 67650503 67650532 -34222637 + AT_rich Low_complexity Low_complexity 1 29 0 276 130 0 0 chr13 67650713 67650759 -34222410 + (CA)n Simple_repeat Simple_repeat 1 46 0 1084 196 5 5 chr13 67650784 67650993 -34222176 + AluJo SINE Alu 11 219 -93 201 182 0 0 chr13 67651004 67651037 -34222132 + A-rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr13 67651847 67651872 -34221297 + AT_rich Low_complexity Low_complexity 1 25 0 241 298 112 51 chr13 67652106 67652284 -34220885 + MIR SINE MIR 74 262 0 38 0 0 0 chr13 67652412 67652450 -34220719 + AT_rich Low_complexity Low_complexity 1 38 0 2398 55 7 3 chr13 67654098 67654405 -34218764 - AluY SINE Alu -3 308 1 209 284 71 89 chr13 67654473 67654642 -34218527 - L2 LINE L2 -6 3307 3142 1245 129 0 0 chr13 67655418 67655596 -34217573 - AluSg/x SINE Alu -11 299 122 225 0 0 0 chr13 67655801 67655826 -34217343 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 444 161 0 0 chr13 67656681 67656762 -34216407 + (CA)n Simple_repeat Simple_repeat 2 82 0 310 318 94 53 chr13 67656935 67657180 -34215989 + MLT1J LTR MaLR 109 363 -148 2003 208 38 13 chr13 67657180 67657633 -34215536 - MER101 LTR ERV1 0 474 11 205 145 13 53 chr13 67658348 67658424 -34214745 + GA-rich Low_complexity Low_complexity 4 76 0 185 69 69 28 chr13 67658515 67658587 -34214582 + (TA)n Simple_repeat Simple_repeat 2 76 0 1988 154 0 0 chr13 67658597 67658908 -34214261 - AluSx SINE Alu -1 311 1 2235 241 33 45 chr13 67659297 67660121 -34213048 + L1M4 LINE L1 3797 4610 -1536 2500 243 38 15 chr13 67660232 67660948 -34212221 + L1M4 LINE L1 4602 5333 -813 315 0 0 0 chr13 67660950 67660985 -34212184 + (CA)n Simple_repeat Simple_repeat 2 36 0 2001 112 40 7 chr13 67661152 67661448 -34211721 - AluSx SINE Alu -3 309 4 297 0 0 0 chr13 67662304 67662337 -34210832 + (T)n Simple_repeat Simple_repeat 1 33 0 243 0 0 0 chr13 67663595 67663622 -34209547 + (A)n Simple_repeat Simple_repeat 1 27 0 204 125 0 0 chr13 67663780 67663812 -34209357 + (TTA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr13 67664236 67664258 -34208911 + AT_rich Low_complexity Low_complexity 1 22 0 479 283 39 33 chr13 67665022 67665202 -34207967 + MIR SINE MIR 47 227 -35 272 257 0 0 chr13 67665407 67665481 -34207688 + MER116 DNA Mariner 6 79 -1 418 97 0 28 chr13 67666829 67666901 -34206268 + L1PA5 LINE L1 6085 6154 0 1889 124 0 39 chr13 67667005 67667312 -34205857 + AluY SINE Alu 1 295 -16 3577 134 11 101 chr13 67668231 67668991 -34204178 + LTR8 LTR ERV1 1 691 0 10552 38 5 0 chr13 67669810 67671860 -34201309 - L1PA5 LINE L1 -18 6136 4081 296 304 40 16 chr13 67672500 67672625 -34200544 + MER94 DNA DNA 5 132 -2 1604 249 46 92 chr13 67672782 67673424 -34199745 + L1MC4 LINE L1 6520 7121 -921 2364 97 3 0 chr13 67673424 67673735 -34199434 - AluSp SINE Alu -1 312 1 1604 249 46 92 chr13 67673735 67673890 -34199279 + L1MC4 LINE L1 7121 7281 -761 284 235 77 12 chr13 67673899 67674037 -34199132 + L1MC4 LINE L1 7901 8042 0 383 143 0 0 chr13 67675661 67675738 -34197431 - L1P LINE L1 -1435 4711 4635 5151 25 0 0 chr13 67675738 67676331 -34196838 + L1PA3 LINE L1 5555 6152 -3 2122 234 62 47 chr13 67676711 67677003 -34196166 + L1MC3 LINE L1 5705 5991 -1794 1372 203 17 84 chr13 67677003 67677421 -34195748 + MLT1B LTR MaLR 1 390 0 2122 234 62 47 chr13 67677421 67677867 -34195302 + L1MC3 LINE L1 5991 6454 -1331 1227 287 79 5 chr13 67677881 67678477 -34194692 + L1MC3 LINE L1 2543 3182 -2964 244 237 11 65 chr13 67678478 67678571 -34194598 - L2 LINE L2 -376 2896 2809 247 291 10 29 chr13 67679255 67679358 -34193811 + L1PA16 LINE L1 150 250 -5954 12513 233 18 27 chr13 67679636 67680127 -34193042 + L1PA16 LINE L1 406 900 -5323 2069 143 0 0 chr13 67680127 67680435 -34192734 + AluSx SINE Alu 1 308 -4 12513 233 18 27 chr13 67680435 67681710 -34191459 + L1PA16 LINE L1 900 2185 -4038 201 39 0 0 chr13 67681710 67681736 -34191433 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 12513 233 18 27 chr13 67681736 67685729 -34187440 + L1PA16 LINE L1 2185 6223 0 923 291 32 18 chr13 67685729 67686212 -34186957 + L1MC3 LINE L1 3212 6999 -786 * 4861 259 61 12 chr13 67686208 67686696 -34186473 - L1 LINE L1 -2271 5294 4831 207 0 0 0 chr13 67686696 67686719 -34186450 + (TG)n Simple_repeat Simple_repeat 2 24 0 4861 259 61 12 chr13 67686719 67688109 -34185060 - L1 LINE L1 -2734 4831 3313 535 123 0 19 chr13 67688109 67688215 -34184954 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 1400 215 10 10 chr13 67688218 67688525 -34184644 - AluJo SINE Alu -5 307 1 23 33 0 0 chr13 67689197 67689227 -34183942 + AT_rich Low_complexity Low_complexity 1 30 0 996 250 4 12 chr13 67689243 67689499 -34183670 - L1 LINE L1 -3486 3620 3367 * 1496 278 59 27 chr13 67689493 67690924 -34182245 - L1 LINE L1 -4521 2516 7 379 318 45 39 chr13 67690945 67691124 -34182045 - MLT1F LTR MaLR -78 464 310 749 243 3 30 chr13 67691688 67691881 -34181288 - MLT1A1 LTR MaLR 0 365 211 27 0 0 0 chr13 67693174 67693201 -34179968 + AT_rich Low_complexity Low_complexity 1 27 0 239 233 37 0 chr13 67694815 67694879 -34178290 + MIR SINE MIR 67 132 -76 23 68 0 0 chr13 67694902 67694946 -34178223 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr13 67694956 67694978 -34178191 + AT_rich Low_complexity Low_complexity 1 22 0 287 155 17 35 chr13 67695751 67695809 -34177360 + MSTC LTR MaLR 24 80 -348 370 169 91 0 chr13 67695968 67696045 -34177124 - MLT1A1 LTR MaLR -12 353 270 1236 153 10 5 chr13 67696265 67696467 -34176702 + L1P3 LINE L1 176 378 -5497 1662 192 47 22 chr13 67697080 67697440 -34175729 - L1MC3 LINE L1 -305 7480 7112 21 0 0 0 chr13 67697443 67697464 -34175705 + AT_rich Low_complexity Low_complexity 1 21 0 326 261 0 87 chr13 67697468 67697560 -34175609 - MER58 DNA MER1_type -131 84 1 21 36 0 0 chr13 67697927 67697955 -34175214 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr13 67698159 67698191 -34174978 + AT_rich Low_complexity Low_complexity 1 32 0 2072 128 73 14 chr13 67698951 67699295 -34173874 + THE1B LTR MaLR 1 364 0 3331 148 36 0 chr13 67700189 67700749 -34172420 + LTR19B LTR ERV1 1 580 0 1896 125 61 7 chr13 67701442 67701738 -34171431 + AluSx SINE Alu 1 312 0 26 30 0 0 chr13 67702675 67702708 -34170461 + AT_rich Low_complexity Low_complexity 1 33 0 230 225 0 14 chr13 67703277 67703348 -34169821 + GA-rich Low_complexity Low_complexity 3 72 0 28 79 0 0 chr13 67703756 67703819 -34169350 + AT_rich Low_complexity Low_complexity 1 63 0 946 221 102 39 chr13 67704158 67704339 -34168830 - LTR36 LTR ERV1 0 611 443 697 153 42 8 chr13 67704339 67704457 -34168712 + FLAM_C SINE Alu 1 122 -11 946 221 102 39 chr13 67704457 67704828 -34168341 - LTR36 LTR ERV1 -168 443 1 345 319 11 0 chr13 67705779 67705870 -34167299 - Tigger7 DNA MER2_type 0 2587 2496 2545 217 48 4 chr13 67705871 67706368 -34166801 - Tigger7 DNA MER2_type -214 519 1 295 121 35 17 chr13 67706511 67706569 -34166600 - HSMAR1 DNA Mariner 0 1287 1229 5968 62 29 3 chr13 67706582 67707341 -34165828 - LTR17 LTR ERV1 0 780 2 269 191 20 16 chr13 67707491 67707571 -34165598 - MER4D LTR ERV1 0 872 382 3103 62 15 0 chr13 67707578 67707983 -34165186 - L1PA6 LINE L1 -431 5723 5313 3235 67 2 0 chr13 67707983 67708402 -34164767 + L1PA6 LINE L1 5733 6153 -1 207 0 0 0 chr13 67708728 67708751 -34164418 + (A)n Simple_repeat Simple_repeat 1 23 0 788 174 123 56 chr13 67708757 67709296 -34163873 - MER4C LTR ERV1 -85 614 1 297 259 88 34 chr13 67709949 67710096 -34163073 - MLT1I LTR MaLR 0 409 255 1384 194 29 87 chr13 67710216 67710617 -34162552 + MER67C LTR ERV1 6 403 -234 234 281 21 31 chr13 67711292 67711388 -34161781 - MLT1K LTR MaLR -36 552 458 267 269 81 37 chr13 67712259 67712474 -34160695 - L1M4c LINE L1 -4653 1910 1537 755 204 0 0 chr13 67712722 67712859 -34160310 + FLAM_C SINE Alu 7 143 0 321 87 0 0 chr13 67712910 67712956 -34160213 + MADE1 DNA Mariner 35 80 0 451 294 0 0 chr13 67713345 67713454 -34159715 - MST-int LTR MaLR -742 909 801 283 204 0 0 chr13 67713601 67713655 -34159514 + MER5A DNA MER1_type 12 65 -124 1768 180 61 3 chr13 67714339 67714666 -34158503 - MSTB LTR MaLR -77 349 4 247 281 16 0 chr13 67714816 67714880 -34158289 + (TGAA)n Simple_repeat Simple_repeat 1 65 0 313 353 62 40 chr13 67715566 67715841 -34157328 - L2 LINE L2 -615 2699 2419 25 75 0 0 chr13 67716408 67716461 -34156708 + AT_rich Low_complexity Low_complexity 1 53 0 198 0 0 0 chr13 67717236 67717258 -34155911 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 22 56 0 0 chr13 67717774 67717810 -34155359 + AT_rich Low_complexity Low_complexity 1 36 0 1492 243 75 16 chr13 67717860 67718350 -34154819 - LTR40a LTR ERVL 0 519 1 403 330 149 9 chr13 67718677 67718892 -34154277 + MIR SINE MIR 6 250 -12 2485 126 3 3 chr13 67719434 67719798 -34153371 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 67719860 67719882 -34153287 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr13 67721080 67721120 -34152049 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr13 67721208 67721241 -34151928 + AT_rich Low_complexity Low_complexity 1 33 0 894 192 35 25 chr13 67722378 67722576 -34150593 - MER3 DNA MER1_type -9 200 1 1397 164 4 0 chr13 67723052 67723355 -34149814 + AluJb SINE Alu 87 390 0 26 0 0 0 chr13 67723878 67723904 -34149265 + AT_rich Low_complexity Low_complexity 1 26 0 497 325 68 28 chr13 67724995 67725219 -34147950 - MIR SINE MIR -10 252 20 1432 234 71 92 chr13 67725964 67726182 -34146987 - L1MC5 LINE L1 -34 7927 7706 243 0 0 0 chr13 67726182 67726209 -34146960 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1992 130 7 3 chr13 67726213 67726506 -34146663 - AluSx SINE Alu -18 294 1 1432 234 71 92 chr13 67726506 67727397 -34145772 - L1MC5 LINE L1 -258 7703 6888 352 326 51 82 chr13 67727673 67728062 -34145107 - L1MC4a LINE L1 -1202 6606 6230 694 291 131 34 chr13 67728610 67729084 -34144085 - L1MC4a LINE L1 -1920 5888 5369 1260 165 32 8 chr13 67731235 67731483 -34141686 - L1MA3 LINE L1 -10 6295 6042 391 266 14 43 chr13 67734963 67735102 -34138067 - MIR SINE MIR -40 222 88 2159 123 3 0 chr13 67735224 67735524 -34137645 - AluSq SINE Alu -12 301 1 429 268 27 16 chr13 67735655 67735841 -34137328 + L1MEc LINE L1 32 324 -6072 1654 178 31 34 chr13 67735856 67736205 -34136964 + MLT1A1 LTR MaLR 5 352 -13 1018 307 95 9 chr13 67736214 67736738 -34136431 + L1MEc LINE L1 334 902 -5494 249 302 78 0 chr13 67736816 67736932 -34136237 + L1MEc LINE L1 1011 1135 -5261 3476 236 40 57 chr13 67737350 67738589 -34134580 + L1MC3 LINE L1 6009 7225 -560 25 75 0 0 chr13 67739361 67739414 -34133755 + AT_rich Low_complexity Low_complexity 1 53 0 3901 208 88 59 chr13 67740240 67741613 -34131556 + L1MC1 LINE L1 1 1609 -4955 * 6252 241 37 12 chr13 67741601 67744050 -34129119 + L1MC1 LINE L1 3744 6251 -511 379 322 102 30 chr13 67744078 67744382 -34128787 - L2 LINE L2 -837 2477 2152 498 229 0 0 chr13 67744388 67744497 -34128672 + L1MB1 LINE L1 4243 4351 -1795 1846 195 14 92 chr13 67744753 67745255 -34127914 + L1MC1 LINE L1 6271 6733 -18 30 27 0 0 chr13 67745262 67745299 -34127870 + AT_rich Low_complexity Low_complexity 1 37 0 1555 244 54 73 chr13 67745305 67745475 -34127694 + L1M4 LINE L1 4203 4375 -1771 1690 191 0 3 chr13 67745475 67745768 -34127401 + AluJo SINE Alu 3 294 -18 1555 244 54 73 chr13 67745768 67746407 -34126762 + L1M4 LINE L1 4375 4997 -1149 * 3379 198 14 33 chr13 67746402 67747192 -34125977 - L1 LINE L1 -2039 4107 3333 1670 232 81 7 chr13 67747192 67747748 -34125421 + L1 LINE L1 4092 4688 -1458 4923 185 25 20 chr13 67747762 67747977 -34125192 - L1PA16 LINE L1 -9 6157 5945 1953 178 85 15 chr13 67747977 67748377 -34124792 - MSTA LTR MaLR 0 428 1 4923 185 25 20 chr13 67748377 67748781 -34124388 - L1PA16 LINE L1 -221 5945 5545 2361 64 0 0 chr13 67748781 67749063 -34124106 - AluY SINE Alu -17 294 13 4923 185 25 20 chr13 67749063 67749856 -34123313 - L1PA16 LINE L1 -621 5545 4748 3824 208 56 39 chr13 67749898 67751668 -34121501 + L1MB1 LINE L1 4323 6122 -46 182 105 53 18 chr13 67751901 67751958 -34121211 + (TA)n Simple_repeat Simple_repeat 1 59 0 276 220 46 46 chr13 67751960 67752133 -34121036 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 * 390 130 95 41 chr13 67752085 67752254 -34120915 + (TA)n Simple_repeat Simple_repeat 2 179 0 1014 175 40 0 chr13 67752374 67752574 -34120595 - Tigger4(Zombi) DNA MER2_type -1 2730 2523 1159 213 68 0 chr13 67752584 67752847 -34120322 + AluJo SINE Alu 26 306 -6 685 138 0 57 chr13 67752848 67752971 -34120198 - Tigger4(Zombi) DNA MER2_type -195 2536 2421 * 1313 188 0 0 chr13 67752970 67753194 -34119975 - Tigger4(Zombi) DNA MER2_type -2507 224 1 258 220 0 0 chr13 67753152 67753202 -34119967 + MER46A DNA MER2_type 103 152 -84 * 798 325 84 12 chr13 67753205 67753633 -34119536 + L1ME3A LINE L1 5705 6163 -7 1582 67 5 0 chr13 67753702 67753911 -34119258 - L1PA5 LINE L1 -13 6141 5932 311 277 115 14 chr13 67754480 67754628 -34118541 + MIR SINE MIR 90 252 -10 32 26 0 0 chr13 67756798 67756837 -34116332 + AT_rich Low_complexity Low_complexity 1 39 0 376 312 82 36 chr13 67757584 67757863 -34115306 - L2 LINE L2 -5 3308 3017 277 307 39 16 chr13 67758398 67758525 -34114644 + MIR SINE MIR 23 152 -110 21 36 0 0 chr13 67758667 67758695 -34114474 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr13 67758746 67758792 -34114377 + AT_rich Low_complexity Low_complexity 1 46 0 245 323 36 62 chr13 67759405 67759597 -34113572 - MIR SINE MIR -11 251 65 1735 152 61 21 chr13 67760320 67760650 -34112519 - MER61A LTR ERV1 0 343 1 20945 97 22 10 chr13 67760650 67761681 -34111488 - MER61A-int LTR ERV1 0 5217 4199 2812 7 0 0 chr13 67761681 67761990 -34111179 - AluYa5 SINE Alu -2 309 1 20945 97 22 10 chr13 67761990 67763936 -34109233 - MER61A-int LTR ERV1 -1018 4199 2206 1070 119 0 13 chr13 67763936 67764087 -34109082 - AluSq/x SINE Alu -162 151 3 1346 256 46 20 chr13 67764090 67764594 -34108575 - L1 LINE L1 -3456 2690 2174 1062 133 9 60 chr13 67764579 67764797 -34108372 - L1PA15-16 LINE L1 -4332 2517 2311 * 4904 142 27 22 chr13 67764802 67765697 -34107472 - L1PA15-16 LINE L1 -3981 2868 1970 708 298 94 57 chr13 67765905 67766311 -34106858 - MLT1H LTR MaLR -3 546 126 2126 105 10 0 chr13 67766390 67766684 -34106485 + AluSx SINE Alu 5 301 -11 42679 33 21 1 chr13 67767851 67773910 -34099259 + L1PA2 LINE L1 1 6182 0 22 56 0 0 chr13 67774419 67774455 -34098714 + AT_rich Low_complexity Low_complexity 1 36 0 317 343 154 38 chr13 67774485 67774908 -34098261 + LTR33 LTR ERVL 16 487 -34 241 143 0 0 chr13 67775193 67775228 -34097941 + L1P5 LINE L1 5679 5713 -438 1812 99 94 61 chr13 67775274 67775637 -34097532 + THE1C LTR MaLR 1 375 0 635 255 0 6 chr13 67775790 67775947 -34097222 - L1P LINE L1 -3766 2380 2225 5041 141 24 13 chr13 67775951 67777249 -34095920 + L1PA15 LINE L1 4842 6165 0 283 194 32 0 chr13 67777355 67777417 -34095752 + L1MB4 LINE L1 5426 5489 -685 426 96 24 24 chr13 67777417 67777500 -34095669 + (GAAA)n Simple_repeat Simple_repeat 4 86 0 2545 217 32 42 chr13 67777504 67777817 -34095352 + L1MB4 LINE L1 5477 5792 -388 396 0 0 0 chr13 67777817 67777861 -34095308 + (TA)n Simple_repeat Simple_repeat 1 44 0 2545 217 32 42 chr13 67777861 67778024 -34095145 + L1MB4 LINE L1 5792 5955 -225 2181 110 3 0 chr13 67778024 67778323 -34094846 + AluSp SINE Alu 1 300 -13 2545 217 32 42 chr13 67778323 67778555 -34094614 + L1MB4 LINE L1 5955 6179 -1 235 299 83 50 chr13 67778559 67778645 -34094524 + L1MC4a LINE L1 3875 3957 -2189 2283 65 14 0 chr13 67778645 67778939 -34094230 + L1PA4 LINE L1 5855 6152 -3 235 299 83 50 chr13 67778939 67779391 -34093778 + L1MC4a LINE L1 3957 4431 -1715 2803 92 18 8 chr13 67779497 67779889 -34093280 - MLT2A1 LTR ERVL -48 396 1 3877 270 66 64 chr13 67780080 67780260 -34092909 + L1MC4a LINE L1 5420 5598 -2210 2291 98 0 0 chr13 67780260 67780557 -34092612 - AluSg SINE Alu -13 297 1 3877 270 66 64 chr13 67780557 67782659 -34090510 + L1MC4a LINE L1 5598 7705 -103 21 36 0 0 chr13 67782804 67782832 -34090337 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 67782854 67782880 -34090289 + AT_rich Low_complexity Low_complexity 1 26 0 5763 135 15 4 chr13 67782910 67784003 -34089166 - L1PA15 LINE L1 -21 6847 5742 995 207 0 5 chr13 67783995 67784208 -34088961 + L1P LINE L1 4855 5066 -1080 * 237 184 0 0 chr13 67785121 67785159 -34088010 - Tigger7 DNA MER2_type -54 2437 2400 * 2969 189 6 6 chr13 67785153 67785677 -34087492 - Tigger7 DNA MER2_type -208 525 2 1387 172 0 0 chr13 67785704 67785931 -34087238 - MER46A DNA MER2_type -9 227 1 1718 257 20 7 chr13 67786529 67786973 -34086196 + LTR65 LTR ERV1 1 450 -219 219 167 0 0 chr13 67787927 67787969 -34085200 + (TATG)n Simple_repeat Simple_repeat 2 43 0 * 237 151 0 0 chr13 67787962 67788015 -34085154 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 298 318 208 0 chr13 67788020 67788212 -34084957 - L2 LINE L2 -622 2692 2461 232 242 32 32 chr13 67788213 67788275 -34084894 + L2 LINE L2 2223 2284 -1030 1777 182 3 0 chr13 67788645 67788936 -34084233 - AluJo SINE Alu -20 292 1 1470 159 0 0 chr13 67789243 67789469 -34083700 - AluSx SINE Alu -24 288 63 199 203 27 0 chr13 67790303 67790377 -34082792 + (TA)n Simple_repeat Simple_repeat 2 77 0 1251 198 47 17 chr13 67790393 67790691 -34082478 - MER44D DNA MER2_type -32 577 1 1290 133 0 0 chr13 67790758 67790961 -34082208 + L1PA14 LINE L1 5957 6159 -2 297 0 0 0 chr13 67791191 67791224 -34081945 + (TG)n Simple_repeat Simple_repeat 1 33 0 490 221 0 0 chr13 67791229 67791324 -34081845 - L1PA15 LINE L1 -1178 5671 5577 5850 228 30 11 chr13 67791330 67792618 -34080551 - L1PA15 LINE L1 -5610 1239 3 2632 224 12 3 chr13 67792620 67793213 -34079956 - L1MC3 LINE L1 -788 6997 6400 1146 356 102 38 chr13 67793582 67794624 -34078545 + L2 LINE L2 47 1154 -2160 186 43 0 0 chr13 67794631 67794654 -34078515 + (CA)n Simple_repeat Simple_repeat 1 23 0 3216 164 59 3 chr13 67794752 67795330 -34077839 + MER50 LTR ERV1 1 610 -124 562 315 107 27 chr13 67796396 67796694 -34076475 - MLT1J2 LTR MaLR -123 327 6 180 0 0 0 chr13 67796991 67797011 -34076158 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 581 200 9 0 chr13 67797474 67797579 -34075590 - FLAM_C SINE Alu -23 120 15 364 262 21 50 chr13 67797829 67797945 -34075224 + Cheshire DNA MER1_type 165 276 -2144 953 201 119 0 chr13 67797945 67798139 -34075030 + Tigger7 DNA MER2_type 1 217 -516 1884 137 33 22 chr13 67798322 67798688 -34074481 + L1MA8 LINE L1 5919 6288 -3 26 0 0 0 chr13 67799931 67799957 -34073212 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr13 67801558 67801586 -34071583 + AT_rich Low_complexity Low_complexity 1 28 0 47 67 0 0 chr13 67802798 67802887 -34070282 + AT_rich Low_complexity Low_complexity 1 89 0 2013 168 38 5 chr13 67802940 67803340 -34069829 - L1PB3 LINE L1 -6 6148 5736 240 111 0 0 chr13 67803665 67803701 -34069468 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 216 200 0 0 chr13 67803976 67804021 -34069148 + T-rich Low_complexity Low_complexity 1 45 0 202 194 0 0 chr13 67804388 67804424 -34068745 + (CA)n Simple_repeat Simple_repeat 2 37 0 236 365 71 0 chr13 67804614 67804740 -34068429 - MIR SINE MIR -37 225 91 21 36 0 0 chr13 67804740 67804768 -34068401 + AT_rich Low_complexity Low_complexity 1 28 0 2236 86 0 13 chr13 67804823 67805138 -34068031 - AluY SINE Alu 0 311 1 371 309 14 43 chr13 67805369 67805576 -34067593 + L1ME3A LINE L1 5579 5779 -391 321 344 56 44 chr13 67805621 67805871 -34067298 + L1ME3A LINE L1 5888 6140 -30 323 262 163 0 chr13 67805911 67806052 -34067117 - HAL1 LINE L1 -362 2145 1982 876 185 67 39 chr13 67806503 67806651 -34066518 - MSTD LTR MaLR -17 348 206 360 0 0 0 chr13 67806651 67806691 -34066478 + (TG)n Simple_repeat Simple_repeat 2 41 0 876 185 67 39 chr13 67806691 67806876 -34066293 - MSTD LTR MaLR -159 206 1 450 232 40 51 chr13 67806959 67807136 -34066033 - MER96B DNA MER1_type? -242 175 1 1939 148 36 18 chr13 67807748 67808085 -34065084 + LTR3b LTR ERVK 158 500 0 1738 186 116 13 chr13 67809869 67809891 -34063278 - MSTA LTR MaLR 0 428 410 2473 77 0 0 chr13 67809891 67810201 -34062968 + AluY SINE Alu 2 311 0 1738 186 116 13 chr13 67810201 67810559 -34062610 - MSTA LTR MaLR -18 410 9 367 277 54 76 chr13 67810595 67810819 -34062350 + L2 LINE L2 3094 3312 -1 23 0 0 0 chr13 67811566 67811589 -34061580 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr13 67811860 67811903 -34061266 + AT_rich Low_complexity Low_complexity 1 43 0 2095 259 81 65 chr13 67811949 67813354 -34059815 - L1ME1 LINE L1 -17 6149 4728 1368 231 62 64 chr13 67813363 67813831 -34059338 - MLT1C LTR MaLR 0 467 1 1595 269 63 29 chr13 67813833 67814637 -34058532 - L1ME1 LINE L1 -1425 4721 3890 737 231 50 28 chr13 67814666 67814848 -34058321 + MER31A LTR ERV1 293 478 -7 405 212 109 80 chr13 67815390 67815527 -34057642 - MLT2F LTR ERVL -517 146 6 2103 103 17 3 chr13 67815650 67815952 -34057217 + AluSg SINE Alu 3 308 -2 5166 163 42 15 chr13 67816016 67817355 -34055814 + L1PA15 LINE L1 4804 6161 -4 1310 149 55 24 chr13 67817355 67817683 -34055486 - Tigger3b DNA MER2_type -420 812 475 2505 165 45 0 chr13 67817782 67818231 -34054938 - Tigger3b DNA MER2_type -762 469 1 29 70 0 0 chr13 67818439 67818496 -34054673 + AT_rich Low_complexity Low_complexity 1 57 0 272 227 144 9 chr13 67818794 67818953 -34054216 + L1MA7 LINE L1 6053 6242 -49 2171 85 0 3 chr13 67819025 67819333 -34053836 + AluY SINE Alu 1 307 0 2087 159 51 56 chr13 67820187 67820273 -34052896 + L1M2 LINE L1 5127 5212 -1079 189 0 0 0 chr13 67820273 67820294 -34052875 + (TC)n Simple_repeat Simple_repeat 2 22 0 2087 159 51 56 chr13 67820294 67820770 -34052399 + L1M2 LINE L1 5212 5695 -596 352 291 26 0 chr13 67821381 67821498 -34051671 + MER117 DNA MER1_type 11 130 -67 185 178 22 0 chr13 67821768 67821813 -34051356 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr13 67822161 67822190 -34050979 + AT_rich Low_complexity Low_complexity 1 29 0 868 192 26 47 chr13 67822593 67822786 -34050383 - MER20 DNA MER1_type 0 219 31 3105 229 83 35 chr13 67823194 67824178 -34048991 - L1MD2 LINE L1 -21 6338 5294 2076 103 0 7 chr13 67824178 67824486 -34048683 - AluSg SINE Alu 0 308 3 3105 229 83 35 chr13 67824486 67824577 -34048592 - L1MD2 LINE L1 -1065 5294 5209 1352 234 50 5 chr13 67824651 67825049 -34048120 - L1 LINE L1 -2994 3152 2737 2227 103 3 0 chr13 67825110 67825410 -34047759 - AluSq SINE Alu -12 301 1 829 113 35 7 chr13 67825424 67825566 -34047603 - L1MA9 LINE L1 -148 6164 6019 598 140 15 81 chr13 67826339 67826475 -34046694 + MLT1C LTR MaLR 11 137 -330 * 1108 256 50 28 chr13 67826465 67826825 -34046344 + MLT1C LTR MaLR 82 449 -18 4140 171 59 0 chr13 67828644 67829443 -34043726 - Tigger1 DNA MER2_type 0 2418 1573 7519 150 10 65 chr13 67829443 67830900 -34042269 - Tigger1 DNA MER2_type -1039 1379 3 1239 142 10 0 chr13 67831242 67831439 -34041730 + AluSp SINE Alu 103 301 -12 22 0 0 0 chr13 67832723 67832745 -34040424 + AT_rich Low_complexity Low_complexity 1 22 0 29077 38 93 1 chr13 67833142 67837746 -34035423 + L1PA4 LINE L1 1128 6155 0 24 0 0 0 chr13 67839719 67839743 -34033426 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 67839867 67839888 -34033281 + AT_rich Low_complexity Low_complexity 1 21 0 708 230 18 12 chr13 67840053 67840218 -34032951 + MLT1D LTR MaLR 6 171 -334 958 195 56 35 chr13 67840268 67840499 -34032670 + MLT1D LTR MaLR 270 505 0 570 35 11 23 chr13 67840687 67840774 -34032395 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 2062 118 3 0 chr13 67840838 67841135 -34032034 - AluSx SINE Alu -14 298 1 344 256 0 12 chr13 67841537 67841619 -34031550 + MER69 DNA AcHobo 76 156 -2370 2463 65 0 0 chr13 67841686 67841994 -34031175 + AluY SINE Alu 1 308 -3 465 274 30 55 chr13 67842005 67842169 -34031000 + MER69 DNA AcHobo 173 332 -2194 4307 164 24 1 chr13 67842502 67843244 -34029925 + L1PA15 LINE L1 5386 6144 -21 225 241 82 19 chr13 67843263 67843421 -34029748 + MER69 DNA AcHobo 2358 2525 -1 271 309 0 21 chr13 67844700 67844797 -34028372 + MLT1I LTR MaLR 108 202 -207 250 265 90 68 chr13 67845029 67845087 -34028082 + L2 LINE L2 2264 2319 -995 2401 42 0 35 chr13 67845087 67845398 -34027771 - AluY SINE Alu -11 300 1 250 265 90 68 chr13 67845398 67845573 -34027596 + L2 LINE L2 2319 2502 -812 246 329 0 0 chr13 67846028 67846110 -34027059 + L2 LINE L2 3190 3271 -1 21 36 0 0 chr13 67846337 67846365 -34026804 + AT_rich Low_complexity Low_complexity 1 28 0 3284 122 14 0 chr13 67846400 67846916 -34026253 - L1MA2 LINE L1 -2 6302 5780 24 32 0 0 chr13 67847064 67847095 -34026074 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr13 67847151 67847181 -34025988 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr13 67847366 67847389 -34025780 + AT_rich Low_complexity Low_complexity 1 23 0 33 66 0 0 chr13 67847602 67847663 -34025506 + AT_rich Low_complexity Low_complexity 1 61 0 29 47 0 0 chr13 67848236 67848279 -34024890 + AT_rich Low_complexity Low_complexity 1 43 0 1609 210 53 63 chr13 67848658 67849168 -34024001 + MLT1D LTR MaLR 1 505 0 425 307 113 27 chr13 67849591 67849891 -34023278 - L1ME4a LINE L1 -276 5845 5520 25 51 0 0 chr13 67850148 67850187 -34022982 + AT_rich Low_complexity Low_complexity 1 39 0 220 102 41 0 chr13 67850809 67850858 -34022311 + (TA)n Simple_repeat Simple_repeat 2 52 0 380 331 7 0 chr13 67850972 67851120 -34022049 - L1ME LINE L1 -503 5659 5511 212 363 81 0 chr13 67851766 67851890 -34021279 - L2 LINE L2 -2 3311 3178 216 0 0 0 chr13 67851892 67851916 -34021253 + (TG)n Simple_repeat Simple_repeat 1 24 0 415 344 63 48 chr13 67852266 67852644 -34020525 - L2 LINE L2 -10 3303 2920 587 246 8 0 chr13 67852689 67852823 -34020346 - AluJo SINE Alu -177 135 1 29 28 0 0 chr13 67853259 67853295 -34019874 + AT_rich Low_complexity Low_complexity 1 36 0 336 24 0 0 chr13 67854055 67854096 -34019073 + (CA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr13 67854412 67854434 -34018735 + AT_rich Low_complexity Low_complexity 1 22 0 6434 240 36 4 chr13 67854571 67856352 -34016817 - L1PA16 LINE L1 -1514 4632 2794 4545 189 45 5 chr13 67856355 67856886 -34016283 + L1PA16 LINE L1 4645 5154 -1012 207 0 0 0 chr13 67856886 67856909 -34016260 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4545 189 45 5 chr13 67856909 67857835 -34015334 + L1PA16 LINE L1 5154 6158 -8 1270 265 75 20 chr13 67857851 67858342 -34014827 + L1MB8 LINE L1 5661 6178 0 2232 118 44 11 chr13 67858693 67859056 -34014113 + THE1C LTR MaLR 1 375 0 487 134 0 49 chr13 67859244 67859326 -34013843 + ERVL-B2 LTR ERVL 1192 1269 -4495 * 6381 186 18 16 chr13 67859323 67860551 -34012618 + ERVL-B2 LTR ERVL 4525 5755 -9 1058 230 112 14 chr13 67860553 67860908 -34012261 + MLT2B2 LTR ERVL 1 397 0 1494 238 44 21 chr13 67861001 67861388 -34011781 + MSTD LTR MaLR 1 396 0 417 286 69 41 chr13 67861388 67861526 -34011643 + L1M4 LINE L1 2731 2864 -3282 2756 19 0 0 chr13 67861526 67861837 -34011332 - AluY SINE Alu 0 311 1 417 286 69 41 chr13 67861837 67862089 -34011080 + L1M4 LINE L1 2864 3132 -3014 2549 20 0 0 chr13 67862514 67862808 -34010361 - L1P2 LINE L1 -502 5653 5360 3585 55 13 0 chr13 67862808 67863261 -34009908 + L1PA4 LINE L1 5691 6153 -2 23 54 0 0 chr13 67863786 67863823 -34009346 + AT_rich Low_complexity Low_complexity 1 37 0 231 313 92 72 chr13 67864102 67864297 -34008872 + MLT1H LTR MaLR 88 286 -263 1956 138 0 3 chr13 67864821 67865111 -34008058 + AluSq SINE Alu 1 289 -24 481 206 23 15 chr13 67865251 67865382 -34007787 + L1MB8 LINE L1 6042 6173 -5 1324 248 27 65 chr13 67865416 67865819 -34007350 + MLT1E2 LTR MaLR 215 602 -24 31 44 0 0 chr13 67866132 67866177 -34006992 + AT_rich Low_complexity Low_complexity 1 45 0 466 217 0 0 chr13 67867574 67867666 -34005503 - Tigger5 DNA MER2_type -1 2322 2231 273 245 0 0 chr13 67867673 67867726 -34005443 - Tigger5 DNA MER2_type -2270 53 1 362 320 108 54 chr13 67867974 67868327 -34004842 - L2 LINE L2 -11 3302 2931 193 179 143 18 chr13 67869708 67869764 -34003405 - MIR SINE MIR -73 189 127 318 200 30 50 chr13 67869858 67869958 -34003211 + L1MEc LINE L1 2000 2097 -4299 233 224 0 0 chr13 67870055 67870113 -34003056 + (TA)n Simple_repeat Simple_repeat 2 59 0 297 0 0 0 chr13 67870143 67870176 -34002993 + (GA)n Simple_repeat Simple_repeat 2 34 0 257 276 35 23 chr13 67870283 67870370 -34002799 + L2 LINE L2 3226 3313 0 503 66 13 0 chr13 67870527 67870603 -34002566 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1122 179 9 0 chr13 67872322 67872534 -34000635 - L1MB1 LINE L1 -3 6165 5952 3210 124 65 18 chr13 67872541 67873106 -34000063 - L1PA16 LINE L1 0 6166 5575 6533 206 10 14 chr13 67873106 67874805 -33998364 + L1PA16 LINE L1 3883 5569 -597 2741 170 64 47 chr13 67874791 67875552 -33997617 - L1MB1 LINE L1 -198 5970 5197 * 199 373 18 71 chr13 67876063 67876288 -33996881 - MIR SINE MIR -46 216 4 445 286 163 7 chr13 67877935 67878082 -33995087 - MER5A DNA MER1_type -6 183 14 22 35 0 0 chr13 67879482 67879511 -33993658 + AT_rich Low_complexity Low_complexity 1 29 0 1691 259 74 13 chr13 67879548 67879566 -33993603 - MLT2B1 LTR ERVL -26 494 479 207 0 0 0 chr13 67879566 67879589 -33993580 + (TG)n Simple_repeat Simple_repeat 2 24 0 1691 259 74 13 chr13 67879589 67880029 -33993140 - MLT2B1 LTR ERVL -41 479 8 761 160 41 114 chr13 67880731 67880950 -33992219 - L1PA16 LINE L1 0 6166 5964 732 131 0 0 chr13 67881071 67881178 -33991991 - L1PB4 LINE L1 -42 6114 6008 1554 202 7 0 chr13 67882882 67883164 -33990005 + AluJo SINE Alu 3 286 -26 24 32 0 0 chr13 67883313 67883344 -33989825 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr13 67883620 67883662 -33989507 + AT_rich Low_complexity Low_complexity 1 42 0 334 351 95 55 chr13 67885418 67886125 -33987044 - L2 LINE L2 -800 2514 1780 2022 145 96 29 chr13 67886347 67886733 -33986436 - MER52C LTR ERV1 0 1278 867 1555 89 0 0 chr13 67886734 67886948 -33986221 - pTR5 LTR ERV1 -2053 385 172 349 214 31 20 chr13 67886951 67887049 -33986120 - LTR30 LTR ERV1 -80 642 544 4362 143 24 25 chr13 67887052 67888018 -33985151 - pTR5 LTR ERV1 -417 2021 743 1877 174 131 42 chr13 67888024 67888606 -33984563 - MER52C LTR ERV1 -408 870 1 197 328 85 32 chr13 67888726 67888915 -33984254 - L2 LINE L2 -1899 1415 1217 214 224 0 40 chr13 67889219 67889295 -33983874 + T-rich Low_complexity Low_complexity 2 74 0 4417 190 18 30 chr13 67890150 67891382 -33981787 - L1PB4 LINE L1 -7 6149 4934 1142 216 41 118 chr13 67891407 67892096 -33981073 + L1M4 LINE L1 2815 3450 -2696 * 1331 162 4 17 chr13 67892094 67892328 -33980841 + L1MA4A LINE L1 13 243 -6606 2052 210 87 4 chr13 67892347 67892851 -33980318 + L1MA4A LINE L1 3299 3844 -3004 * 3114 215 10 40 chr13 67892846 67894369 -33978800 + L1MA4 LINE L1 4680 6171 -3 5309 218 145 14 chr13 67894371 67895264 -33977905 + L1MA4A LINE L1 3819 4594 -2411 7119 198 2 2 chr13 67895264 67896366 -33976803 + L1PA16 LINE L1 3686 4787 -1379 190 0 67 0 chr13 67896366 67896396 -33976773 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 7119 198 2 2 chr13 67896396 67896510 -33976659 + L1PA16 LINE L1 4787 4900 -1266 2284 169 2 15 chr13 67896510 67896918 -33976251 - MER57A LTR ERV1 0 403 1 7119 198 2 2 chr13 67896918 67898168 -33975001 + L1PA16 LINE L1 4899 6165 -1 5309 218 145 14 chr13 67898168 67899999 -33973170 + L1MA4A LINE L1 4594 7004 -1 2096 258 47 45 chr13 67899997 67900885 -33972284 + L1MB7 LINE L1 3437 4326 -1820 * 870 231 107 13 chr13 67900884 67901183 -33971986 + L1MB7 LINE L1 5841 6167 -17 * 590 266 15 110 chr13 67901942 67902009 -33971160 - MER92A LTR ERV1 0 636 564 506 143 76 0 chr13 67902009 67902114 -33971055 + L1MA7 LINE L1 6179 6291 0 590 266 15 110 chr13 67902114 67902384 -33970785 - MER92A LTR ERV1 -72 564 119 2182 116 0 0 chr13 67902608 67902902 -33970267 - AluSx SINE Alu -18 294 1 21 36 0 0 chr13 67902906 67902934 -33970235 + AT_rich Low_complexity Low_complexity 1 28 0 1972 140 14 0 chr13 67903663 67903955 -33969214 + AluSx SINE Alu 1 296 -16 22 70 0 0 chr13 67904146 67904189 -33968980 + AT_rich Low_complexity Low_complexity 1 43 0 192 250 0 0 chr13 67905208 67905248 -33967921 + MIR SINE MIR 96 135 -127 4120 182 50 34 chr13 67905379 67906328 -33966841 - L1MA8 LINE L1 0 6291 5328 2017 197 46 21 chr13 67906326 67906804 -33966365 + L1MA8 LINE L1 4841 5330 -816 * 317 279 23 62 chr13 67907165 67907294 -33965875 - MER20 DNA MER1_type -92 127 4 486 270 0 17 chr13 67907526 67907641 -33965528 + L1ME LINE L1 5478 5590 -574 216 67 0 0 chr13 67907648 67907678 -33965491 + (T)n Simple_repeat Simple_repeat 1 30 0 192 163 0 0 chr13 67907789 67907832 -33965337 + (CA)n Simple_repeat Simple_repeat 1 43 0 186 43 0 0 chr13 67907846 67907869 -33965300 + (GA)n Simple_repeat Simple_repeat 2 24 0 263 183 32 11 chr13 67907993 67908086 -33965083 + (TA)n Simple_repeat Simple_repeat 1 95 0 210 333 30 0 chr13 67908172 67908238 -33964931 + MIR SINE MIR 1 68 -194 1319 271 43 13 chr13 67908238 67908614 -33964555 + LTR40a LTR ERVL 133 519 0 1828 210 35 22 chr13 67908640 67909092 -33964077 - MLT1C LTR MaLR -2 465 8 1671 174 7 13 chr13 67911345 67911655 -33961514 + AluJo SINE Alu 1 308 -4 2492 104 35 3 chr13 67912183 67912558 -33960611 + L1PA10 LINE L1 5782 6168 0 269 289 0 21 chr13 67912848 67912945 -33960224 + ERVL LTR ERVL 1621 1715 -4049 23 0 0 0 chr13 67913360 67913383 -33959786 + AT_rich Low_complexity Low_complexity 1 23 0 2062 141 0 0 chr13 67913476 67913781 -33959388 + AluSx SINE Alu 1 305 -7 523 318 42 9 chr13 67914200 67914414 -33958755 + ERVL LTR ERVL 2304 2524 -3240 21 100 0 0 chr13 67914766 67914836 -33958333 + AT_rich Low_complexity Low_complexity 1 70 0 1494 198 3 51 chr13 67914941 67915255 -33957914 + AluJo SINE Alu 1 299 -13 248 370 158 25 chr13 67915296 67915499 -33957670 - L2 LINE L2 -180 3133 2904 309 51 0 0 chr13 67915501 67915540 -33957629 + (TG)n Simple_repeat Simple_repeat 2 40 0 314 308 107 6 chr13 67916028 67916197 -33956972 - L2 LINE L2 -707 2607 2422 531 303 38 4 chr13 67916204 67916468 -33956701 - L1M4 LINE L1 -746 5400 5128 4624 159 33 4 chr13 67916514 67917856 -33955313 + L1MA3 LINE L1 4377 5761 -544 2022 99 3 0 chr13 67918149 67918442 -33954727 + L1MA3 LINE L1 5797 6090 -215 517 336 94 8 chr13 67918525 67918790 -33954379 - HERV16 LTR ERVL -2591 2405 2118 612 326 21 5 chr13 67919689 67919879 -33953290 - HERV16 LTR ERVL -4802 194 2 839 331 65 18 chr13 67919900 67920284 -33952885 - LTR16A LTR ERVL -21 429 28 417 388 48 16 chr13 67920438 67920747 -33952422 - MLT1I LTR MaLR -35 374 56 335 336 83 21 chr13 67920822 67921063 -33952106 + L2 LINE L2 717 972 -2342 347 282 61 0 chr13 67921258 67921389 -33951780 - MIR SINE MIR -28 234 96 396 321 57 93 chr13 67921540 67922098 -33951071 + L2 LINE L2 1365 1902 -1412 21 0 0 0 chr13 67922176 67922197 -33950972 + AT_rich Low_complexity Low_complexity 1 21 0 1920 120 3 3 chr13 67922199 67922509 -33950660 + AluSg SINE Alu 1 310 0 189 417 45 0 chr13 67924797 67924953 -33948216 - L2 LINE L2 -7 3265 3103 195 42 0 0 chr13 67925226 67925250 -33947919 + (CA)n Simple_repeat Simple_repeat 1 24 0 301 335 104 48 chr13 67925901 67926170 -33946999 + L1MEc LINE L1 289 572 -5824 1674 236 3 3 chr13 67926184 67926544 -33946625 + MLT1A1 LTR MaLR 6 365 0 334 259 139 50 chr13 67926546 67926747 -33946422 + L1MEc LINE L1 581 799 -5597 8031 200 61 16 chr13 67927224 67928902 -33944267 + MER52A LTR ERV1 2 1755 0 2428 215 31 8 chr13 67929024 67929545 -33943624 + Tigger1 DNA MER2_type 7 539 -1879 505 236 18 0 chr13 67929785 67929895 -33943274 + Tigger7 DNA MER2_type 1 112 -593 23 54 0 0 chr13 67930608 67930645 -33942524 + AT_rich Low_complexity Low_complexity 1 37 0 1712 153 192 0 chr13 67930757 67931116 -33942053 + MSTA LTR MaLR 1 428 0 542 150 35 6 chr13 67931349 67931522 -33941647 + (TA)n Simple_repeat Simple_repeat 2 179 0 313 315 0 11 chr13 67931541 67931633 -33941536 + L1MC4 LINE L1 6613 6703 -1339 302 247 37 0 chr13 67931602 67931683 -33941486 - L1MCa LINE L1 -4358 2068 1985 * 185 207 0 17 chr13 67931713 67931771 -33941398 + (CATA)n Simple_repeat Simple_repeat 3 59 0 682 309 46 50 chr13 67931787 67932204 -33940965 + L1MC4a LINE L1 6408 6822 -986 213 241 0 19 chr13 67932204 67932258 -33940911 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 483 145 86 26 chr13 67934123 67934240 -33938929 + MER53 DNA DNA 2 125 -64 313 222 0 0 chr13 67934297 67934360 -33938809 - L1MC4 LINE L1 -1339 6703 6641 1510 197 3 14 chr13 67935030 67935325 -33937844 + AluJb SINE Alu 1 292 -20 4413 256 33 27 chr13 67935326 67937579 -33935590 - L1MA7 LINE L1 -13 6482 4244 230 0 33 0 chr13 67937579 67937609 -33935560 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 4413 256 33 27 chr13 67937609 67938815 -33934354 - L1MA7 LINE L1 -2251 4244 56 419 139 0 13 chr13 67938815 67938894 -33934275 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 1704 169 7 0 chr13 67938894 67939167 -33934002 - AluSx SINE Alu -37 275 1 348 210 0 0 chr13 67939168 67939230 -33933939 - L1MA7 LINE L1 -6217 64 3 21 71 0 0 chr13 67939393 67939435 -33933734 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr13 67939673 67939718 -33933451 + AT_rich Low_complexity Low_complexity 1 45 0 352 208 14 14 chr13 67939910 67939982 -33933187 - MLT1F1 LTR MaLR -429 138 67 877 89 58 20 chr13 67940094 67940265 -33932904 - L1MA2 LINE L1 -104 6200 6027 229 188 62 16 chr13 67940233 67940297 -33932872 + L1MA10 LINE L1 6263 6329 -5 * 186 307 13 53 chr13 67941099 67941174 -33931995 - L2 LINE L2 -50 3263 3192 265 272 15 29 chr13 67941357 67941493 -33931676 + A-rich Low_complexity Low_complexity 5 138 0 23 0 0 0 chr13 67941493 67941516 -33931653 + AT_rich Low_complexity Low_complexity 1 23 0 207 181 0 69 chr13 67941568 67941640 -33931529 + A-rich Low_complexity Low_complexity 1 67 0 29 0 0 0 chr13 67942289 67942318 -33930851 + AT_rich Low_complexity Low_complexity 1 29 0 1636 253 74 70 chr13 67942320 67943340 -33929829 + L1MC5 LINE L1 6538 7532 -429 252 0 0 0 chr13 67943684 67943712 -33929457 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2352 76 0 0 chr13 67945315 67945616 -33927553 + AluY SINE Alu 1 301 -10 21 0 0 0 chr13 67947096 67947117 -33926052 + AT_rich Low_complexity Low_complexity 1 21 0 3417 174 51 4 chr13 67947565 67948273 -33924896 + L1MA4 LINE L1 5559 6299 -1 359 283 87 57 chr13 67950437 67950561 -33922608 + MLT1H1 LTR MaLR 231 350 -205 741 204 6 32 chr13 67950561 67950718 -33922451 - FRAM SINE Alu -13 153 1 359 283 87 57 chr13 67950718 67950882 -33922287 + MLT1H1 LTR MaLR 350 537 -18 43892 37 3 1 chr13 67951286 67957420 -33915749 + L1PA3 LINE L1 9 6152 -3 23 0 0 0 chr13 67957420 67957443 -33915726 + AT_rich Low_complexity Low_complexity 1 23 0 525 211 82 23 chr13 67958153 67958393 -33914776 - MLT1D LTR MaLR 0 505 188 201 39 0 0 chr13 67958457 67958483 -33914686 + (CA)n Simple_repeat Simple_repeat 1 26 0 2099 109 14 3 chr13 67958727 67959020 -33914149 + AluSg SINE Alu 4 299 -11 290 263 0 13 chr13 67960866 67960942 -33912227 + CT-rich Low_complexity Low_complexity 4 78 0 679 211 128 48 chr13 67960967 67961218 -33911951 - L1MC2 LINE L1 -11 6333 6063 1062 240 43 102 chr13 67961966 67962701 -33910468 + MER52A LTR ERV1 655 1470 -285 691 279 0 0 chr13 67962704 67962862 -33910307 + MER52A LTR ERV1 1598 1755 0 27 49 0 0 chr13 67962880 67962921 -33910248 + AT_rich Low_complexity Low_complexity 1 41 0 212 333 13 26 chr13 67964872 67964948 -33908221 + MIR SINE MIR 69 144 -64 1989 141 3 0 chr13 67964966 67965265 -33907904 - AluSx SINE Alu -12 300 1 312 229 0 83 chr13 67965405 67965504 -33907665 - L1MC4 LINE L1 -1339 6703 6612 1879 98 84 31 chr13 67965504 67965791 -33907378 - AluSx SINE Alu -10 302 1 25 83 0 0 chr13 67966942 67967002 -33906167 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 67967047 67967068 -33906101 + AT_rich Low_complexity Low_complexity 1 21 0 1414 213 79 34 chr13 67967453 67967834 -33905335 - MLT1D LTR MaLR 0 505 108 1423 212 10 24 chr13 67968051 67968182 -33904987 + AluJo SINE Alu 1 132 -180 315 0 0 0 chr13 67968182 67968217 -33904952 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1423 212 10 24 chr13 67968217 67968378 -33904791 + AluJo SINE Alu 132 289 -23 251 28 28 0 chr13 67968383 67968419 -33904750 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 241 114 0 0 chr13 67968447 67968491 -33904678 + L1MA8 LINE L1 6244 6287 -4 337 279 31 62 chr13 67968520 67968649 -33904520 - L1MC4 LINE L1 -1304 6738 6614 319 322 0 0 chr13 67968573 67968663 -33904506 + L1MC4 LINE L1 6614 6703 -1339 * 23 54 0 0 chr13 67968773 67968810 -33904359 + AT_rich Low_complexity Low_complexity 1 37 0 477 340 59 56 chr13 67968908 67969264 -33903905 + MLT2F LTR ERVL 101 457 -206 415 317 79 32 chr13 67969508 67969899 -33903270 + L1M4 LINE L1 4375 4778 -1368 1415 235 53 31 chr13 67970107 67970597 -33902572 - MLT1D LTR MaLR -4 501 1 522 0 0 0 chr13 67972336 67972394 -33900775 + (TG)n Simple_repeat Simple_repeat 2 59 0 27 49 0 0 chr13 67975142 67975183 -33897986 + AT_rich Low_complexity Low_complexity 1 41 0 2083 110 0 10 chr13 67975379 67975671 -33897498 - AluSc SINE Alu -20 289 1 387 60 0 0 chr13 67976018 67976068 -33897101 + (TG)n Simple_repeat Simple_repeat 2 51 0 23 54 0 0 chr13 67976414 67976451 -33896718 + AT_rich Low_complexity Low_complexity 1 37 0 384 200 0 0 chr13 67977054 67977144 -33896025 + GA-rich Low_complexity Low_complexity 2 91 0 213 94 0 0 chr13 67977249 67977281 -33895888 + (GA)n Simple_repeat Simple_repeat 2 33 0 291 207 83 66 chr13 67977281 67977402 -33895767 - MLT2D LTR ERVL -20 500 275 545 230 16 0 chr13 67977408 67977534 -33895635 - MLT2B1 LTR ERVL -386 134 7 212 308 0 0 chr13 67977967 67978019 -33895150 + polypyrimidine Low_complexity Low_complexity 3 54 0 965 254 74 49 chr13 67978021 67978493 -33894676 - Charlie4a DNA MER1_type 0 508 25 5556 111 101 81 chr13 67980063 67981843 -33891326 + pTR5 LTR ERV1 743 2438 0 25 0 0 0 chr13 67982096 67982121 -33891048 + AT_rich Low_complexity Low_complexity 1 25 0 1953 96 13 36 chr13 67982129 67982430 -33890739 + AluY SINE Alu 1 294 -17 1643 190 0 10 chr13 67982565 67982876 -33890293 + AluJb SINE Alu 1 308 -4 206 353 97 21 chr13 67984478 67984716 -33888453 + L2 LINE L2 2359 2614 -700 2548 155 42 63 chr13 67984746 67985300 -33887869 - MLT2B3 LTR ERVL -12 542 1 2197 111 0 0 chr13 67985391 67985688 -33887481 - AluSq SINE Alu -16 297 1 500 249 162 39 chr13 67985863 67986196 -33886973 + L1ME3A LINE L1 5657 6030 -140 2094 86 10 33 chr13 67986827 67987128 -33886041 - AluY SINE Alu -17 294 1 229 273 0 0 chr13 67988009 67988064 -33885105 + (TATG)n Simple_repeat Simple_repeat 2 56 0 202 404 38 6 chr13 67988101 67988284 -33884885 + L2 LINE L2 2330 2518 -796 4036 193 28 14 chr13 67988425 67989475 -33883694 - L1M2 LINE L1 -745 5401 4461 2663 191 21 38 chr13 67989473 67989782 -33883387 + L1MA7 LINE L1 5520 5833 -458 * 180 0 0 0 chr13 67989782 67989802 -33883367 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2401 77 0 22 chr13 67989808 67990121 -33883048 + AluY SINE Alu 5 310 -1 2663 191 21 38 chr13 67990121 67990415 -33882754 + L1MA7 LINE L1 5838 6120 -171 27 81 0 0 chr13 67990437 67990499 -33882670 + AT_rich Low_complexity Low_complexity 1 62 0 1327 232 48 72 chr13 67991062 67991579 -33881590 - MLT1D LTR MaLR 0 505 1 230 250 0 0 chr13 67993034 67993082 -33880087 - HAL1b LINE L1 -443 905 858 26 74 0 0 chr13 67993397 67993451 -33879718 + AT_rich Low_complexity Low_complexity 1 54 0 258 315 100 8 chr13 67993758 67993888 -33879281 + L2 LINE L2 1264 1405 -1909 1064 290 119 41 chr13 67993892 67994635 -33878534 + L2 LINE L2 1754 2609 -705 281 315 81 0 chr13 67994680 67994791 -33878378 + L2 LINE L2 3190 3309 -4 385 272 96 56 chr13 67995680 67995930 -33877239 - Charlie2 DNA MER1_type -2516 266 7 327 343 116 6 chr13 67996291 67996463 -33876706 + MIR SINE MIR 1 191 -71 1254 214 107 42 chr13 67996810 67997239 -33875930 - MSTB2 LTR MaLR 0 457 1 22 70 0 0 chr13 67997440 67997483 -33875686 + AT_rich Low_complexity Low_complexity 1 43 0 757 347 19 16 chr13 67997657 67997968 -33875201 + L1PA13 LINE L1 73 384 -6403 230 384 7 7 chr13 67998226 67998364 -33874805 + L1PA13 LINE L1 1384 1521 -5266 535 289 91 0 chr13 67999036 67999233 -33873936 + L1PA13 LINE L1 3102 3316 -3481 21 71 0 0 chr13 67999241 67999283 -33873886 + AT_rich Low_complexity Low_complexity 1 42 0 477 194 0 0 chr13 67999286 67999379 -33873790 + L1MA5 LINE L1 6208 6300 0 28 29 0 0 chr13 67999702 67999737 -33873432 + AT_rich Low_complexity Low_complexity 1 35 0 610 306 132 50 chr13 68000313 68001462 -33871707 + HAL1 LINE L1 331 1573 -934 389 288 110 5 chr13 68001573 68001764 -33871405 - HAL1 LINE L1 -710 1797 1587 601 107 0 0 chr13 68001914 68001998 -33871171 - AluSq/x SINE Alu -205 107 24 27 49 0 0 chr13 68002189 68002230 -33870939 + AT_rich Low_complexity Low_complexity 1 41 0 1202 249 95 34 chr13 68002640 68003113 -33870056 + MLT1D LTR MaLR 4 505 0 242 253 25 0 chr13 68003300 68003379 -33869790 + L1ME LINE L1 36 116 -5954 5986 176 30 2 chr13 68003691 68004749 -33868420 - MSTA-int LTR MaLR -563 1088 1 1837 158 121 3 chr13 68004749 68005128 -33868041 - MSTA LTR MaLR -4 424 1 262 170 2 0 chr13 68005510 68005567 -33867602 + L1MA7 LINE L1 6230 6278 -13 27 49 0 0 chr13 68005584 68005625 -33867544 + AT_rich Low_complexity Low_complexity 1 41 0 27 87 0 0 chr13 68005813 68005882 -33867287 + AT_rich Low_complexity Low_complexity 1 69 0 2060 102 0 7 chr13 68006178 68006489 -33866680 - AluY SINE Alu 0 309 1 366 346 65 22 chr13 68006553 68006969 -33866200 - L1M4c LINE L1 -2079 4303 3870 285 268 160 0 chr13 68007353 68007566 -33865603 - L1M4c LINE L1 -3711 2671 2425 1161 193 133 39 chr13 68007591 68007923 -33865246 + MLT1A1 LTR MaLR 1 363 -2 262 237 11 32 chr13 68007989 68008082 -33865087 + T-rich Low_complexity Low_complexity 2 92 0 2561 166 50 118 chr13 68008227 68008889 -33864280 - LTR35 LTR ERV1 0 618 2 367 256 112 78 chr13 68008896 68008928 -33864241 - LTR35-int LTR ERV1 0 6676 6647 1968 142 0 0 chr13 68008928 68009223 -33863946 - AluSx SINE Alu -17 295 1 367 256 112 78 chr13 68009223 68009448 -33863721 - LTR35-int LTR ERV1 -29 6647 6410 28 0 0 0 chr13 68009467 68009495 -33863674 + AT_rich Low_complexity Low_complexity 1 28 0 2036 124 3 10 chr13 68009563 68009862 -33863307 + AluSp SINE Alu 1 297 -16 282 115 0 19 chr13 68009940 68009992 -33863177 - LTR35-int LTR ERV1 -285 6046 5996 7273 197 72 67 chr13 68010206 68011477 -33861692 - LTR35-int LTR ERV1 -548 5398 4135 2138 107 3 0 chr13 68011477 68011766 -33861403 - AluSp SINE Alu -18 295 6 7273 197 72 67 chr13 68011766 68013234 -33859935 - LTR35-int LTR ERV1 -1811 4135 1843 1293 234 53 107 chr13 68013322 68013835 -33859334 - HUERS-P1 LTR ERV1 -4122 3415 2931 3676 200 15 49 chr13 68013850 68015028 -33858141 - HUERS-P1 LTR ERV1 -2594 2286 1142 2271 100 0 0 chr13 68015028 68015329 -33857840 - AluSq SINE Alu -12 301 1 3676 200 15 49 chr13 68015329 68015480 -33857689 - HUERS-P1 LTR ERV1 -3738 1142 987 272 350 71 7 chr13 68015952 68016092 -33857077 - HUERS-P1 LTR ERV1 -5359 587 439 2956 147 36 72 chr13 68016129 68016307 -33856862 - LTR35 LTR ERV1 0 618 435 1461 159 8 0 chr13 68016307 68016552 -33856617 - AluJb SINE Alu -63 249 3 2956 147 36 72 chr13 68016552 68017014 -33856155 - LTR35 LTR ERV1 -183 435 1 346 325 80 32 chr13 68017060 68017371 -33855798 - L1M4c LINE L1 -4558 2005 1680 338 266 70 58 chr13 68017388 68017605 -33855564 - L1M4c LINE L1 -4801 1581 1255 1828 184 30 0 chr13 68017655 68017992 -33855177 + MER7A DNA MER2_type 1 345 -1 394 96 27 0 chr13 68018533 68018606 -33854563 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 23 0 0 0 chr13 68019143 68019166 -33854003 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 68019610 68019631 -33853538 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr13 68020045 68020115 -33853054 + AT_rich Low_complexity Low_complexity 1 70 0 200 200 0 0 chr13 68020240 68020280 -33852889 + T-rich Low_complexity Low_complexity 1 40 0 623 168 0 15 chr13 68022302 68022439 -33850730 + L1MA4 LINE L1 6165 6299 -1 24 32 0 0 chr13 68022631 68022662 -33850507 + AT_rich Low_complexity Low_complexity 1 31 0 2151 61 68 0 chr13 68022671 68022949 -33850220 + AluY SINE Alu 1 297 -14 1785 170 24 27 chr13 68023018 68023394 -33849775 + THE1C LTR MaLR 1 375 0 3343 133 83 14 chr13 68023394 68023942 -33849227 + THE1C-int LTR MaLR 1 590 -990 2108 142 25 8 chr13 68023942 68024078 -33849091 - THE1C LTR MaLR 0 375 243 237 33 0 0 chr13 68024078 68024108 -33849061 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2108 142 25 8 chr13 68024108 68024338 -33848831 - THE1C LTR MaLR -132 243 3 3343 133 83 14 chr13 68024338 68024352 -33848817 + THE1C-int LTR MaLR 590 602 -978 853 220 88 0 chr13 68024354 68024604 -33848565 - L1 LINE L1 -772 5374 5103 419 298 29 53 chr13 68024605 68024981 -33848188 + L1MEc LINE L1 2211 2577 -4144 2321 167 10 7 chr13 68024985 68025392 -33847777 - L1PA16 LINE L1 -412 5754 5347 2269 133 24 34 chr13 68025392 68025804 -33847365 + L1PA16 LINE L1 5754 6163 -3 1754 271 34 25 chr13 68025822 68026279 -33846890 + L1MEc LINE L1 2533 3000 -3540 2022 126 3 0 chr13 68026279 68026589 -33846580 + AluSx SINE Alu 1 311 0 1754 271 34 25 chr13 68026589 68026898 -33846271 + L1MEc LINE L1 3000 3305 -3235 2240 71 0 77 chr13 68027028 68027365 -33845804 + AluY SINE Alu 1 311 0 37 76 0 0 chr13 68027735 68027814 -33845355 + AT_rich Low_complexity Low_complexity 1 79 0 32 0 0 0 chr13 68027856 68027888 -33845281 + AT_rich Low_complexity Low_complexity 1 32 0 2130 185 38 7 chr13 68028201 68028622 -33844547 - Tigger2a DNA MER2_type 0 434 1 201 204 20 0 chr13 68028903 68028952 -33844217 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr13 68029117 68029141 -33844028 + AT_rich Low_complexity Low_complexity 1 24 0 9486 194 32 24 chr13 68029306 68029698 -33843471 - L1MA8 LINE L1 -246 6045 5658 186 43 0 0 chr13 68029698 68029721 -33843448 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 9486 194 32 24 chr13 68029721 68032282 -33840887 - L1MA8 LINE L1 -633 5658 3070 3028 272 92 34 chr13 68032280 68033198 -33839971 + MSTD-int LTR MaLR 699 1669 -66 * 558 226 26 0 chr13 68033198 68033313 -33839856 + FLAM_A SINE Alu 1 118 -24 28 29 0 0 chr13 68033322 68033357 -33839812 + AT_rich Low_complexity Low_complexity 1 35 0 754 247 99 96 chr13 68033423 68033807 -33839362 + MSTD LTR MaLR 12 396 0 5359 203 45 53 chr13 68033819 68034964 -33838205 + L1MA8 LINE L1 3808 4921 -1370 561 194 8 0 chr13 68034964 68035088 -33838081 + L1MA4 LINE L1 6170 6294 -6 5359 203 45 53 chr13 68035088 68036252 -33836917 + L1MA8 LINE L1 4921 6093 -198 25 51 0 0 chr13 68036415 68036454 -33836715 + AT_rich Low_complexity Low_complexity 1 39 0 601 296 21 11 chr13 68036470 68036659 -33836510 + MIR SINE MIR 11 201 -61 2917 3 0 0 chr13 68037343 68037661 -33835508 + AluYb8 SINE Alu 1 318 0 2041 217 42 51 chr13 68038254 68038858 -33834311 - L1MC2 LINE L1 0 7765 6138 1892 238 69 32 chr13 68038918 68039422 -33833747 - L1MC3 LINE L1 -892 6893 6371 4459 65 35 7 chr13 68039449 68040450 -33832719 - MER11A LTR ERVK 0 1266 1 784 223 22 44 chr13 68040455 68040684 -33832485 - L1MC3 LINE L1 -1445 6340 6117 22 35 0 0 chr13 68040684 68040713 -33832456 + AT_rich Low_complexity Low_complexity 1 29 0 246 342 135 35 chr13 68041235 68041495 -33831674 - MLT1I LTR MaLR -77 332 47 21 57 0 0 chr13 68041690 68041725 -33831444 + AT_rich Low_complexity Low_complexity 1 35 0 933 257 50 103 chr13 68042154 68042899 -33830270 + MER67B LTR ERV1 1 660 -1 1908 119 10 45 chr13 68043103 68043414 -33829755 + AluSx SINE Alu 1 300 -12 725 277 10 10 chr13 68044080 68044275 -33828894 - L1ME1 LINE L1 -10 6156 5962 230 344 21 11 chr13 68044716 68044809 -33828360 - L2 LINE L2 -32 3281 3188 328 316 123 28 chr13 68044847 68045059 -33828110 + MIR SINE MIR 17 248 -14 1202 230 39 125 chr13 68045128 68045798 -33827371 + LTR9 LTR ERV1 1 612 0 39297 155 43 20 chr13 68045810 68046483 -33826686 + HUERS-P3 LTR ERV1 10 666 -8253 2067 129 3 0 chr13 68046483 68046785 -33826384 - AluSx SINE Alu -9 303 1 39297 155 43 20 chr13 68046785 68047534 -33825635 + HUERS-P3 LTR ERV1 666 1396 -7523 191 227 120 0 chr13 68047534 68047609 -33825560 - MER5C DNA MER1_type -240 84 1 39297 155 43 20 chr13 68047609 68052860 -33820309 + HUERS-P3 LTR ERV1 1396 6912 -2007 1358 165 28 16 chr13 68053078 68053332 -33819837 + HUERS-P3 LTR ERV1 8659 8915 -4 1293 222 36 159 chr13 68053336 68053936 -33819233 + LTR9 LTR ERV1 1 505 -107 1363 52 11 0 chr13 68053936 68054110 -33819059 - L1PA3 LINE L1 -3 6152 5977 1293 222 36 159 chr13 68054110 68054207 -33818962 + LTR9 LTR ERV1 505 612 0 30 59 0 0 chr13 68054557 68054608 -33818561 + AT_rich Low_complexity Low_complexity 1 51 0 29 60 0 0 chr13 68054683 68054733 -33818436 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr13 68054851 68054880 -33818289 + AT_rich Low_complexity Low_complexity 1 29 0 283 366 79 33 chr13 68055198 68055535 -33817634 + L2 LINE L2 2735 3088 -225 21 0 0 0 chr13 68055553 68055574 -33817595 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 68056823 68056861 -33816308 + AT_rich Low_complexity Low_complexity 1 38 0 203 236 0 36 chr13 68056916 68056971 -33816198 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 328 266 89 49 chr13 68057213 68057428 -33815741 - L1ME LINE L1 -475 5695 5478 207 100 0 0 chr13 68057428 68057458 -33815711 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 331 280 92 24 chr13 68057504 68057711 -33815458 - L1ME LINE L1 -692 5478 5258 1780 133 0 25 chr13 68058713 68058992 -33814177 + AluSc SINE Alu 1 272 -37 283 240 58 89 chr13 68059565 68059596 -33813573 - L1MB8 LINE L1 -263 5915 5885 1891 105 11 0 chr13 68059596 68059775 -33813394 - AluSg SINE Alu -7 303 119 180 0 0 0 chr13 68059775 68059795 -33813374 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1891 105 11 0 chr13 68059795 68059881 -33813288 - AluSg SINE Alu -191 119 35 283 240 58 89 chr13 68059881 68060074 -33813095 - L1MB8 LINE L1 -293 5885 5698 3533 243 37 10 chr13 68060136 68061046 -33812123 - L1MD2 LINE L1 -2 6357 5423 2016 210 67 25 chr13 68061064 68061620 -33811549 + L1MA9 LINE L1 5699 6277 -35 644 137 0 0 chr13 68061622 68061724 -33811445 - AluJb SINE Alu 0 312 211 1796 143 12 0 chr13 68061730 68061989 -33811180 + MER1B DNA MER1_type 77 338 -1 398 221 15 92 chr13 68061990 68062121 -33811048 + MER58B DNA MER1_type 221 341 0 355 304 164 5 chr13 68062132 68062339 -33810830 - MLT1G1 LTR MaLR -353 242 3 2879 172 20 7 chr13 68062727 68063319 -33809850 - L1MA6 LINE L1 -467 5833 5231 2501 162 21 8 chr13 68063319 68063789 -33809380 + L1MA6 LINE L1 5819 6294 -6 1169 165 13 0 chr13 68064080 68064310 -33808859 + L1MA4 LINE L1 6062 6294 -6 27 73 0 0 chr13 68064344 68064399 -33808770 + AT_rich Low_complexity Low_complexity 1 55 0 183 80 0 0 chr13 68064657 68064682 -33808487 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1402 187 0 28 chr13 68064737 68065021 -33808148 - AluJb SINE Alu 0 312 37 1080 179 22 0 chr13 68065022 68065251 -33807918 - L1MA4 LINE L1 -5 6295 6062 25 65 0 0 chr13 68066223 68066269 -33806900 + AT_rich Low_complexity Low_complexity 1 46 0 232 156 0 0 chr13 68066712 68066757 -33806412 - L1MA9 LINE L1 -35 6277 6233 2642 181 4 2 chr13 68066766 68067231 -33805938 + MST-int LTR MaLR 24 489 -1162 213 121 0 0 chr13 68067526 68067559 -33805610 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chr13 68068272 68068297 -33804872 + AT_rich Low_complexity Low_complexity 1 25 0 623 334 62 25 chr13 68068644 68068964 -33804205 - L2 LINE L2 -8 3305 2974 243 265 0 15 chr13 68069719 68069787 -33803382 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 1909 144 63 9 chr13 68069834 68070167 -33803002 - MSTB1 LTR MaLR -47 385 35 714 258 32 39 chr13 68070404 68070683 -33802486 - L1MD3 LINE L1 -932 7063 6787 303 104 0 0 chr13 68070719 68070767 -33802402 + (TG)n Simple_repeat Simple_repeat 1 48 0 1738 266 95 61 chr13 68070768 68070984 -33802185 - L1MC3 LINE L1 -1225 6978 6771 2222 46 3 11 chr13 68070984 68071297 -33801872 + AluY SINE Alu 1 311 0 1738 266 95 61 chr13 68071297 68071417 -33801752 - L1MC3 LINE L1 -1432 6771 6657 446 158 50 30 chr13 68071417 68071518 -33801651 + L1MA6 LINE L1 6194 6296 -4 1738 266 95 61 chr13 68071518 68072099 -33801070 - L1MC3 LINE L1 -1546 6657 6028 845 266 126 55 chr13 68072111 68072647 -33800522 + MER68 LTR ERV1 6 555 -7 882 268 52 29 chr13 68072657 68073294 -33799875 - L1MC3 LINE L1 -755 5809 5383 233 244 0 0 chr13 68073295 68073340 -33799829 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 257 237 92 0 chr13 68073340 68073416 -33799753 - L1MC3 LINE L1 -1196 5368 5286 767 219 115 0 chr13 68073473 68073665 -33799504 - MLT1E1 LTR MaLR -315 339 126 2926 266 82 23 chr13 68073746 68075474 -33797695 - L1MC3 LINE L1 -2711 3853 2050 1797 201 16 0 chr13 68075484 68075853 -33797316 - L1MA6 LINE L1 -5 6295 5921 3141 164 29 42 chr13 68075853 68076499 -33796670 + L1MA6 LINE L1 5300 5937 -363 1805 262 43 43 chr13 68076548 68077515 -33795654 - L1MC3 LINE L1 -4764 1800 845 1726 178 0 3 chr13 68077551 68077849 -33795320 - AluJb SINE Alu -14 298 2 504 307 67 48 chr13 68078173 68078548 -33794621 - L1MC3 LINE L1 -5623 422 41 22 80 0 0 chr13 68078560 68078610 -33794559 + AT_rich Low_complexity Low_complexity 1 50 0 361 225 185 40 chr13 68078667 68078867 -33794302 + L1ME3 LINE L1 5932 6160 -2 48 77 0 0 chr13 68078867 68078971 -33794198 + AT_rich Low_complexity Low_complexity 1 104 0 990 311 49 20 chr13 68079661 68080210 -33792959 - L1MC4a LINE L1 -1805 6003 5439 750 272 54 52 chr13 68080229 68080674 -33792495 - L1ME3 LINE L1 -1 6161 5710 952 290 97 18 chr13 68080680 68081473 -33791696 - L1MC4a LINE L1 -3149 2997 2142 21 57 0 0 chr13 68081489 68081524 -33791645 + AT_rich Low_complexity Low_complexity 1 35 0 835 264 4 4 chr13 68081525 68081752 -33791417 - L1ME3 LINE L1 -655 5704 5478 5325 224 57 37 chr13 68081759 68082491 -33790678 + L1MC3 LINE L1 6241 6957 -828 207 0 0 0 chr13 68082491 68082514 -33790655 + (TG)n Simple_repeat Simple_repeat 2 24 0 5325 224 57 37 chr13 68082514 68082556 -33790613 + L1MC3 LINE L1 6957 6997 -788 195 100 0 0 chr13 68082556 68082586 -33790583 + (TA)n Simple_repeat Simple_repeat 1 30 0 5325 224 57 37 chr13 68082586 68083309 -33789860 + L1MC3 LINE L1 6997 7769 -16 287 279 0 0 chr13 68083315 68083395 -33789774 - MLT1H1 LTR MaLR -488 67 1 25 31 0 0 chr13 68084362 68084394 -33788775 + AT_rich Low_complexity Low_complexity 1 32 0 2052 139 0 0 chr13 68084710 68085019 -33788150 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr13 68085811 68085832 -33787337 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chr13 68086839 68086865 -33786304 + (A)n Simple_repeat Simple_repeat 1 26 0 596 257 178 7 chr13 68088305 68088586 -33784583 - L2 LINE L2 -316 2997 2668 1868 112 70 3 chr13 68088840 68089126 -33784043 - AluY SINE Alu -6 305 1 21 0 0 0 chr13 68089128 68089149 -33784020 + AT_rich Low_complexity Low_complexity 1 21 0 249 256 0 0 chr13 68089288 68089370 -33783799 + (TAAA)n Simple_repeat Simple_repeat 2 83 0 1637 178 35 38 chr13 68089773 68090139 -33783030 - MLT1A1 LTR MaLR 0 365 1 29 84 0 0 chr13 68090316 68090387 -33782782 + AT_rich Low_complexity Low_complexity 1 71 0 2437 223 43 15 chr13 68090535 68091212 -33781957 - L1MB7 LINE L1 -9 6175 5480 2126 266 42 27 chr13 68091219 68092103 -33781066 + L1M4 LINE L1 3949 4845 -1301 1347 198 46 17 chr13 68092107 68092555 -33780614 + MLT2B2 LTR ERVL 3 515 0 1217 226 15 92 chr13 68092559 68092896 -33780273 - HERVL-B1 LTR ERVL -5035 729 419 580 143 10 10 chr13 68092898 68092996 -33780173 + MER4A LTR ERV1 1 98 -566 1790 153 23 23 chr13 68093031 68093338 -33779831 + MER4A LTR ERV1 358 664 0 2522 137 84 56 chr13 68093341 68093993 -33779176 + MER4A-int LTR ERV1 1 840 -5758 1102 251 45 7 chr13 68094041 68094328 -33778841 + MER4A-int LTR ERV1 1851 2148 -4183 1893 131 7 24 chr13 68094328 68094626 -33778543 + MER4A LTR ERV1 372 664 0 961 254 46 27 chr13 68094656 68094980 -33778189 - HERVL-B1 LTR ERVL -5311 343 36 1374 201 19 44 chr13 68094980 68095298 -33777871 + AluJb SINE Alu 1 310 -2 961 254 46 27 chr13 68095298 68095335 -33777834 - HERVL-B1 LTR ERVL -5618 36 1 340 154 0 0 chr13 68095337 68095398 -33777771 - MLT2B1 LTR ERVL -5 515 450 1243 241 32 69 chr13 68095402 68095784 -33777385 + L1M4 LINE L1 4874 5232 -914 1964 152 41 39 chr13 68095784 68096147 -33777022 + THE1B LTR MaLR 1 364 0 1243 241 32 69 chr13 68096147 68096299 -33776870 + L1M4 LINE L1 5232 5388 -758 21 57 0 0 chr13 68096385 68096420 -33776749 + AT_rich Low_complexity Low_complexity 1 35 0 27 73 0 0 chr13 68096536 68096591 -33776578 + AT_rich Low_complexity Low_complexity 1 55 0 650 147 83 0 chr13 68096641 68096750 -33776419 + FLAM_C SINE Alu 1 118 -25 24 67 0 0 chr13 68096750 68096795 -33776374 + AT_rich Low_complexity Low_complexity 1 45 0 1205 179 17 80 chr13 68098234 68098584 -33774585 + AluJo SINE Alu 1 331 0 2481 111 19 5 chr13 68100180 68100549 -33772620 + THE1C LTR MaLR 1 374 -1 1462 234 31 19 chr13 68101116 68101475 -33771694 + MLT1A2 LTR MaLR 1 363 -11 1453 161 18 4 chr13 68101571 68101917 -33771252 - L1M2 LINE L1 -744 5402 5096 1540 213 6 12 chr13 68101928 68102266 -33770903 + L1M2 LINE L1 5445 5780 -520 4467 56 4 0 chr13 68102336 68102892 -33770277 + LTR6B LTR ERV1 1 558 0 21 0 0 0 chr13 68102916 68102937 -33770232 + AT_rich Low_complexity Low_complexity 1 21 0 1771 156 57 28 chr13 68103929 68104282 -33768887 + THE1C LTR MaLR 1 363 -12 31 58 0 0 chr13 68104329 68104381 -33768788 + AT_rich Low_complexity Low_complexity 1 52 0 328 326 60 71 chr13 68105020 68105455 -33767714 + ERVL LTR ERVL 4943 5372 -392 303 28 0 0 chr13 68105813 68105849 -33767320 + (TG)n Simple_repeat Simple_repeat 2 37 0 463 75 0 140 chr13 68106334 68106387 -33766782 - MADE1 DNA Mariner 0 80 44 2227 106 3 0 chr13 68106387 68106690 -33766479 + AluSx SINE Alu 1 304 -8 463 75 0 140 chr13 68106690 68106729 -33766440 - MADE1 DNA Mariner -36 44 1 25 0 0 0 chr13 68106815 68106840 -33766329 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr13 68107358 68107382 -33765787 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 674 209 0 0 chr13 68107386 68107515 -33765654 - FRAM SINE Alu -37 139 11 527 323 93 33 chr13 68107617 68107700 -33765469 - L2 LINE L2 -16 3297 3220 2268 108 0 3 chr13 68107700 68108006 -33765163 - AluSq SINE Alu -8 305 1 527 323 93 33 chr13 68108006 68108035 -33765134 - L2 LINE L2 -93 3220 3194 2197 166 39 2 chr13 68108035 68108451 -33764718 + MER95 LTR ERV 1 431 0 527 323 93 33 chr13 68108451 68108937 -33764232 - L2 LINE L2 -119 3194 2672 2959 67 8 0 chr13 68109095 68109470 -33763699 - HERVL LTR ERVL -1286 4368 3991 * 12124 83 1 4 chr13 68109469 68111061 -33762108 - HERVL LTR ERVL -3742 1912 325 609 217 0 0 chr13 68111061 68111176 -33761993 + AluJb SINE Alu 183 297 -15 1687 157 35 28 chr13 68111249 68111643 -33761526 - L1MB1 LINE L1 -3 6165 5769 2400 226 25 8 chr13 68111648 68112178 -33760991 + MER44D DNA MER2_type 11 604 -1 5067 162 44 24 chr13 68112385 68113547 -33759622 - L1MA4 LINE L1 -4 6296 5106 4664 195 37 16 chr13 68113625 68114714 -33758455 + L1 LINE L1 3687 4797 -1349 1245 182 28 0 chr13 68114714 68114961 -33758208 + LTR60 LTR ERV1 1 254 -332 201 74 0 0 chr13 68114961 68114988 -33758181 + (A)n Simple_repeat Simple_repeat 1 27 0 1059 212 92 20 chr13 68115010 68115303 -33757866 + LTR60 LTR ERV1 229 542 -44 969 169 54 92 chr13 68115168 68115482 -33757687 + TAR1 Satellite telomeric 12 313 -1798 * 1255 171 8 25 chr13 68115482 68115510 -33757659 + L1 LINE L1 4794 4821 -1325 3111 132 14 2 chr13 68115510 68116011 -33757158 + MER84 LTR ERV1 1 507 0 1255 171 8 25 chr13 68116011 68116221 -33756948 + L1 LINE L1 4821 5028 -1118 736 180 102 180 chr13 68116225 68116559 -33756610 + MER52A LTR ERV1 663 970 -785 649 259 132 21 chr13 68116550 68116739 -33756430 + MER52A LTR ERV1 1096 1305 -450 * 637 218 59 63 chr13 68116758 68117016 -33756153 + MER52A LTR ERV1 339 1305 -10 487 202 0 0 chr13 68117176 68117275 -33755894 + L1 LINE L1 5041 5139 -1007 383 342 81 34 chr13 68117356 68117654 -33755515 + L2 LINE L2 3002 3313 0 21 0 0 0 chr13 68118865 68118886 -33754283 + AT_rich Low_complexity Low_complexity 1 21 0 4858 94 24 0 chr13 68118971 68119676 -33753493 + LTR30 LTR ERV1 1 722 0 26 30 0 0 chr13 68119730 68119763 -33753406 + AT_rich Low_complexity Low_complexity 1 33 0 229 330 87 29 chr13 68120016 68120222 -33752947 - LTR67 LTR ERVL -8 549 332 21 0 0 0 chr13 68120640 68120661 -33752508 + AT_rich Low_complexity Low_complexity 1 21 0 1372 229 65 42 chr13 68120677 68121078 -33752091 - MER92A LTR ERV1 -2 410 1 1146 214 76 7 chr13 68122312 68122601 -33750568 + L1MCa LINE L1 22 330 -6096 2573 207 40 12 chr13 68122607 68123212 -33749957 - L1PA16 LINE L1 -1439 4707 4086 4051 188 48 5 chr13 68123215 68124498 -33748671 + L1PA16 LINE L1 4701 6040 -126 4313 136 26 58 chr13 68124498 68125270 -33747899 + L1PA8 LINE L1 223 969 -5492 11073 96 10 0 chr13 68125270 68127675 -33745494 + L1PA8 LINE L1 4066 6472 -15 459 52 0 0 chr13 68127684 68127742 -33745427 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 790 170 7 0 chr13 68127744 68127885 -33745284 + L1PA16 LINE L1 6025 6166 0 2495 229 45 54 chr13 68127901 68128986 -33744183 + L1MCb LINE L1 275 1334 -4856 682 261 50 52 chr13 68129647 68129956 -33743213 + MER67D LTR ERV1 2 339 -243 1285 148 46 0 chr13 68129956 68130172 -33742997 - L1PA16 LINE L1 -155 6011 5786 278 114 0 23 chr13 68130187 68130231 -33742938 + MER67C LTR ERV1 347 389 -321 753 241 41 75 chr13 68130261 68130606 -33742563 - MER31-int LTR ERV1 -2187 2749 2417 21 57 0 0 chr13 68131114 68131149 -33742020 + AT_rich Low_complexity Low_complexity 1 35 0 361 278 57 114 chr13 68132358 68132815 -33740354 - L1MC4 LINE L1 -791 7170 6740 399 342 146 18 chr13 68132840 68133176 -33739993 - L1MC4a LINE L1 -1476 6332 5954 288 120 0 0 chr13 68133180 68133230 -33739939 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 920 266 68 66 chr13 68133268 68133368 -33739801 + MLT1C LTR MaLR 9 107 -360 2575 47 0 0 chr13 68133368 68133669 -33739500 + AluY SINE Alu 1 301 -10 920 266 68 66 chr13 68133669 68134023 -33739146 + MLT1C LTR MaLR 107 464 -3 243 0 0 0 chr13 68134026 68134053 -33739116 + (CA)n Simple_repeat Simple_repeat 2 28 0 261 324 81 12 chr13 68134215 68134474 -33738695 - L1MC4a LINE L1 -2278 5530 5254 585 333 99 25 chr13 68135406 68136033 -33737136 - L1MC4a LINE L1 -1396 4750 4078 320 328 70 6 chr13 68136107 68136278 -33736891 - L1MC4a LINE L1 -2169 3977 3796 27 73 0 0 chr13 68136362 68136417 -33736752 + AT_rich Low_complexity Low_complexity 1 55 0 714 268 127 53 chr13 68136787 68137313 -33735856 - MER34C LTR ERV1 0 585 21 413 163 9 46 chr13 68137692 68137779 -33735390 + AluJo SINE Alu 56 135 -167 25 0 0 0 chr13 68138450 68138475 -33734694 + AT_rich Low_complexity Low_complexity 1 25 0 259 130 37 3 chr13 68139474 68139532 -33733637 - Tigger4(Zombi) DNA MER2_type -14 2717 2660 1181 222 8 16 chr13 68139543 68139795 -33733374 - AluJo SINE Alu -62 250 1 435 306 82 49 chr13 68140650 68141071 -33732098 + LTR33A LTR ERVL 4 473 -50 225 94 0 0 chr13 68141275 68141307 -33731862 + (A)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr13 68141618 68141655 -33731514 + AT_rich Low_complexity Low_complexity 1 37 0 2208 162 20 2 chr13 68141735 68142131 -33731038 + MER57A LTR ERV1 1 403 0 227 181 14 28 chr13 68142542 68142614 -33730555 + (TATAA)n Simple_repeat Simple_repeat 4 74 0 7341 41 0 6 chr13 68142819 68143822 -33729347 + L1PA5 LINE L1 5157 6154 0 2005 254 47 42 chr13 68144367 68145673 -33727496 + L1MD3 LINE L1 472 2392 -4172 4975 126 26 8 chr13 68145709 68146510 -33726659 - L1PA13 LINE L1 0 6163 5348 583 214 77 33 chr13 68146511 68146693 -33726476 - MLT1B LTR MaLR -200 190 1 390 284 36 10 chr13 68146697 68146891 -33726278 + L1M4 LINE L1 3757 3955 -2191 1141 218 52 9 chr13 68146916 68147260 -33725909 + L1MD3 LINE L1 3547 3905 -2659 857 231 12 5 chr13 68147276 68147501 -33725668 + L1MD3 LINE L1 6044 6273 -489 700 273 92 40 chr13 68147518 68147888 -33725281 - MLT1D LTR MaLR -116 389 1 315 96 0 64 chr13 68147960 68148054 -33725115 + (TA)n Simple_repeat Simple_repeat 2 89 0 594 252 0 0 chr13 68148054 68148197 -33724972 + L1MD3 LINE L1 6646 6788 -1625 495 221 18 0 chr13 68148207 68148320 -33724849 + L1MC3 LINE L1 7649 7763 -22 519 275 70 18 chr13 68148357 68148688 -33724481 + L1MCb LINE L1 3088 3435 -3129 311 278 229 17 chr13 68148883 68149185 -33723984 + L1MCb LINE L1 3940 4305 -2259 22 56 0 0 chr13 68149620 68149656 -33723513 + AT_rich Low_complexity Low_complexity 1 36 0 2182 109 0 0 chr13 68149790 68150105 -33723064 + AluSx SINE Alu 1 315 0 27 29 0 0 chr13 68150214 68150248 -33722921 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr13 68150997 68151027 -33722142 + AT_rich Low_complexity Low_complexity 1 30 0 284 308 196 0 chr13 68151054 68151197 -33721972 - MIR SINE MIR -14 248 78 415 117 0 0 chr13 68151504 68151564 -33721605 + AluJ/FRAM SINE Alu 233 292 -20 23 68 0 0 chr13 68151647 68151691 -33721478 + AT_rich Low_complexity Low_complexity 1 44 0 362 315 122 53 chr13 68151773 68152265 -33720904 + L1MC4a LINE L1 5332 5857 -1951 453 19 0 0 chr13 68152354 68152408 -33720761 + (CA)n Simple_repeat Simple_repeat 2 55 0 24 0 0 0 chr13 68152751 68152775 -33720394 + AT_rich Low_complexity Low_complexity 1 24 0 2111 114 7 7 chr13 68152776 68153082 -33720087 + AluY SINE Alu 1 306 -5 39 38 0 0 chr13 68153842 68153895 -33719274 + AT_rich Low_complexity Low_complexity 1 53 0 232 203 0 102 chr13 68154682 68154741 -33718428 - AluJ/FLAM SINE Alu -202 100 48 23 0 0 0 chr13 68155543 68155566 -33717603 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 68155964 68155985 -33717184 + AT_rich Low_complexity Low_complexity 1 21 0 1931 151 48 20 chr13 68156905 68157256 -33715913 - THE1C LTR MaLR 0 375 15 1237 256 85 43 chr13 68157977 68158212 -33714957 - LTR40a LTR ERVL 0 519 295 1559 227 8 32 chr13 68158212 68158586 -33714583 + MLT1A1 LTR MaLR 1 365 0 1237 256 85 43 chr13 68158586 68158842 -33714327 - LTR40a LTR ERVL -224 295 7 284 343 105 6 chr13 68158874 68159055 -33714114 - HERVL40 LTR ERVL -27 5503 5305 * 573 345 12 8 chr13 68159049 68159298 -33713871 - MER89-int LTR ERV1 -305 6496 6247 1931 156 137 8 chr13 68159417 68159796 -33713373 + MSTA LTR MaLR 1 428 0 8000 195 22 9 chr13 68159796 68161425 -33711744 + MSTA-int LTR MaLR 1 1651 0 1912 169 102 8 chr13 68161425 68161816 -33711353 + MSTA LTR MaLR 1 428 0 888 258 53 28 chr13 68162343 68162773 -33710396 - L1M4 LINE L1 -886 5260 4820 1824 260 60 30 chr13 68162841 68163315 -33709854 - L1MD3 LINE L1 -745 5681 5705 2181 121 16 0 chr13 68163315 68163621 -33709548 - AluSx SINE Alu -1 311 1 1824 260 60 30 chr13 68163621 68164546 -33708623 - L1MD3 LINE L1 -720 5706 4810 2045 147 0 0 chr13 68164553 68164846 -33708323 - AluSx SINE Alu -19 293 1 1354 230 53 41 chr13 68164848 68165339 -33707830 - L1MD3 LINE L1 -1820 4606 4110 318 269 42 34 chr13 68165345 68165464 -33707705 - L1MD3 LINE L1 -3965 2461 2342 1317 257 36 85 chr13 68165589 68166622 -33706547 - L1MD3 LINE L1 -4396 2211 1007 1109 161 0 28 chr13 68167153 68167333 -33705836 + Charlie3 DNA MER1_type 1 175 -2535 33 0 0 0 chr13 68167548 68167581 -33705588 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chr13 68168220 68168255 -33704914 + AT_rich Low_complexity Low_complexity 1 35 0 306 302 9 9 chr13 68168421 68168527 -33704642 - MLT1F-int LTR MaLR -1585 150 45 993 287 80 71 chr13 68168554 68169091 -33704078 - MLT1F LTR MaLR 0 542 1 22 56 0 0 chr13 68170866 68170902 -33702267 + AT_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr13 68171057 68171094 -33702075 + AT_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr13 68171482 68171524 -33701645 + AT_rich Low_complexity Low_complexity 1 42 0 23 54 0 0 chr13 68171579 68171616 -33701553 + AT_rich Low_complexity Low_complexity 1 37 0 256 310 163 8 chr13 68171822 68171951 -33701218 + L1MB4 LINE L1 5510 5658 -2150 4318 222 49 11 chr13 68172058 68172069 -33701100 + L1 LINE L1 4200 4209 -1953 3290 201 27 11 chr13 68172069 68172814 -33700355 - L1MB1 LINE L1 0 6168 5412 4318 222 49 11 chr13 68172814 68173989 -33699180 + L1MB1 LINE L1 4209 5414 -748 22 0 0 0 chr13 68174713 68174735 -33698434 + AT_rich Low_complexity Low_complexity 1 22 0 233 155 35 0 chr13 68174830 68174888 -33698281 + L1MA8 LINE L1 4465 4524 -1622 5895 154 158 11 chr13 68174888 68176585 -33696584 + L1PB1 LINE L1 3824 5900 -251 1886 157 7 3 chr13 68176585 68176891 -33696278 - AluJb SINE Alu -5 307 1 5895 154 158 11 chr13 68176891 68177187 -33695982 + L1PB1 LINE L1 5900 6151 0 4951 175 31 33 chr13 68177175 68177911 -33695258 + L1MA8 LINE L1 4492 5228 -1063 * 309 198 47 0 chr13 68177911 68177997 -33695172 + L1MB4 LINE L1 6089 6178 -2 4951 175 31 33 chr13 68177997 68178255 -33694914 + L1MA8 LINE L1 5228 5485 -806 1381 198 3 45 chr13 68178255 68178568 -33694601 + AluJb SINE Alu 1 300 -2 4951 175 31 33 chr13 68178568 68178717 -33694452 + L1MA8 LINE L1 5485 5633 -658 1873 192 40 23 chr13 68178717 68179144 -33694025 + Tigger2a DNA MER2_type 1 434 0 4951 175 31 33 chr13 68179144 68179795 -33693374 + L1MA8 LINE L1 5633 6286 -5 4030 65 2 21 chr13 68179820 68180355 -33692814 + LTR17 LTR ERV1 256 780 0 6321 55 17 17 chr13 68180355 68182084 -33691085 + HERV17 LTR ERV1 1 1864 -6762 5967 62 4 7 chr13 68182083 68182840 -33690329 + HERV17 LTR ERV1 1681 2435 -6191 * 2212 248 58 23 chr13 68183105 68184210 -33688959 - L1MC/D LINE L1 -712 5530 4384 1935 156 0 0 chr13 68184311 68184606 -33688563 + AluSx SINE Alu 1 295 -17 4107 151 48 98 chr13 68184746 68185920 -33687249 - L1MA4 LINE L1 -6 6294 5174 684 244 16 93 chr13 68185918 68186176 -33686993 + L1MDa LINE L1 237 474 -6066 * 203 59 0 29 chr13 68186953 68186987 -33686182 + (CAAAG)n Simple_repeat Simple_repeat 3 35 0 27 0 0 0 chr13 68188063 68188090 -33685079 + AT_rich Low_complexity Low_complexity 1 27 0 2505 218 29 19 chr13 68188731 68189350 -33683819 - L1MC3 LINE L1 -15 7770 7146 284 122 0 20 chr13 68189350 68189399 -33683770 - MLT2C2 LTR ERVL 0 520 473 931 261 85 0 chr13 68189447 68189742 -33683427 - MLT2C2 LTR ERVL -49 415 96 14271 167 27 21 chr13 68189760 68191777 -33681392 - L1MA2 LINE L1 0 7723 5720 249 57 0 0 chr13 68191777 68191812 -33681357 + (TG)n Simple_repeat Simple_repeat 2 36 0 14271 167 27 21 chr13 68191812 68194590 -33678579 - L1MA2 LINE L1 -2003 5720 2902 761 219 12 0 chr13 68194591 68194755 -33678414 + L1PBa LINE L1 1488 1653 -5210 716 262 30 5 chr13 68194791 68194993 -33678176 - L1MC3 LINE L1 -1025 6760 6554 890 243 25 18 chr13 68194994 68195274 -33677895 - L1MC3 LINE L1 -2449 5546 5265 239 377 0 0 chr13 68195707 68195784 -33677385 - L2 LINE L2 -665 2649 2573 639 183 8 8 chr13 68196552 68196683 -33676486 + L1PA16 LINE L1 6034 6164 -2 24 53 0 0 chr13 68198222 68198260 -33674909 + AT_rich Low_complexity Low_complexity 1 38 0 414 167 0 0 chr13 68199397 68199463 -33673706 + AluS SINE Alu 1 66 -247 3758 185 10 36 chr13 68199465 68200183 -33672986 - MER72 LTR ERV1 -23 699 1 348 24 0 0 chr13 68200645 68200686 -33672483 + (GA)n Simple_repeat Simple_repeat 2 42 0 2361 209 38 2 chr13 68200738 68201245 -33671924 + LTR45 LTR ERV1 1 525 0 219 324 81 9 chr13 68201266 68201377 -33671792 + L3 LINE CR1 966 1084 -493 4031 137 17 5 chr13 68201387 68202031 -33671138 + MER39B LTR ERV1 1 652 -1 423 333 224 11 chr13 68202572 68202929 -33670240 + L2 LINE L2 2881 3313 0 21 36 0 0 chr13 68203432 68203460 -33669709 + AT_rich Low_complexity Low_complexity 1 28 0 184 204 37 37 chr13 68203824 68203878 -33669291 + L2 LINE L2 3005 3058 -214 444 147 22 0 chr13 68204161 68204297 -33668872 + (TA)n Simple_repeat Simple_repeat 2 140 0 777 149 14 7 chr13 68204380 68204521 -33668648 + L1PA16 LINE L1 6024 6165 -1 180 111 0 0 chr13 68204530 68204557 -33668612 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 26 30 0 0 chr13 68204747 68204780 -33668389 + AT_rich Low_complexity Low_complexity 1 33 0 745 127 33 0 chr13 68205483 68205728 -33667441 - L1MA4 LINE L1 -9 6291 5856 1603 146 34 58 chr13 68205882 68206177 -33666992 - AluSx SINE Alu -24 288 1 22 0 0 0 chr13 68206923 68206945 -33666224 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr13 68207340 68207364 -33665805 + (T)n Simple_repeat Simple_repeat 1 24 0 186 217 200 0 chr13 68207740 68207800 -33665369 + MIR3 SINE MIR 106 177 -31 21 57 0 0 chr13 68208055 68208090 -33665079 + AT_rich Low_complexity Low_complexity 1 35 0 230 303 185 33 chr13 68208861 68209224 -33663945 + L1MC4 LINE L1 7608 8025 -17 375 222 61 20 chr13 68210162 68210261 -33662908 + MER106B DNA MER1_type 53 155 -904 30 27 0 0 chr13 68210261 68210298 -33662871 + AT_rich Low_complexity Low_complexity 1 37 0 373 360 0 0 chr13 68210376 68210487 -33662682 + L2 LINE L2 3150 3260 -12 1941 224 83 38 chr13 68211416 68211946 -33661223 - MLT2B3 LTR ERVL 0 554 1 39 50 0 0 chr13 68212302 68212362 -33660807 + AT_rich Low_complexity Low_complexity 1 60 0 635 280 84 31 chr13 68213255 68213480 -33659689 - MIR SINE MIR -23 239 3 413 325 43 100 chr13 68213485 68213836 -33659333 + L2 LINE L2 2939 3269 -3 * 494 340 97 46 chr13 68213831 68214058 -33659111 + L3 LINE CR1 604 857 -720 1483 140 0 18 chr13 68214058 68214280 -33658889 + AluJb SINE Alu 84 301 -11 494 340 97 46 chr13 68214280 68214402 -33658767 + L3 LINE CR1 857 971 -606 1109 186 99 8 chr13 68214455 68214707 -33658462 + L1MC4a LINE L1 6820 7094 -714 195 353 129 0 chr13 68214952 68215068 -33658101 + MIR SINE MIR 16 146 -62 642 228 87 55 chr13 68215205 68215517 -33657652 - L1M4 LINE L1 -1545 4601 4280 1409 240 156 2 chr13 68215522 68215972 -33657197 + L1ME3 LINE L1 5635 6153 -9 872 171 47 24 chr13 68216004 68216174 -33656995 - L1MC2 LINE L1 0 6344 6171 1267 88 10 10 chr13 68216378 68216572 -33656597 - L1PB2 LINE L1 0 6151 5958 28 61 0 0 chr13 68216772 68216821 -33656348 + AT_rich Low_complexity Low_complexity 1 49 0 1349 249 95 81 chr13 68216903 68217174 -33655995 - HAL1 LINE L1 -140 2367 2101 2028 129 3 3 chr13 68217174 68217468 -33655701 - AluSx SINE Alu -18 294 1 1349 249 95 81 chr13 68217468 68218147 -33655022 - HAL1 LINE L1 -406 2101 1404 337 217 76 60 chr13 68218169 68218353 -33654816 - HAL1 LINE L1 -1189 1318 1132 432 220 0 22 chr13 68218392 68218483 -33654686 - L2 LINE L2 -22 3291 3203 270 332 128 15 chr13 68218483 68218679 -33654490 - HAL1 LINE L1 -1933 574 357 387 240 23 23 chr13 68218793 68218964 -33654205 + (TA)n Simple_repeat Simple_repeat 1 171 0 434 236 22 22 chr13 68218992 68219290 -33653879 + (TA)n Simple_repeat Simple_repeat 1 298 0 305 229 37 64 chr13 68219315 68219424 -33653745 - L1MC4 LINE L1 -1322 6720 6615 327 227 10 52 chr13 68219462 68219559 -33653610 - L1MC4 LINE L1 -1333 6709 6617 335 171 13 0 chr13 68219563 68219639 -33653530 + (TA)n Simple_repeat Simple_repeat 1 77 0 370 206 82 10 chr13 68220691 68220788 -33652381 + MER112 DNA MER1_type 129 232 -28 259 364 64 0 chr13 68220850 68220960 -33652209 + MIR3 SINE MIR 47 163 -45 3872 14 0 0 chr13 68221320 68221763 -33651406 + L1PA2 LINE L1 5713 6155 0 234 0 0 0 chr13 68221772 68221798 -33651371 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr13 68222701 68222722 -33650447 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr13 68224280 68224304 -33648865 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 7647 161 13 12 chr13 68224866 68227000 -33646169 - L1PB2 LINE L1 -247 5904 3772 276 280 201 11 chr13 68228455 68228644 -33644525 + L2 LINE L2 2810 3034 -279 326 219 42 42 chr13 68228658 68228754 -33644415 + L2 LINE L2 3210 3305 -8 264 301 11 0 chr13 68229031 68229124 -33644045 - L2 LINE L2 -1471 1843 1750 248 238 8 74 chr13 68229205 68229327 -33643842 - L1ME4a LINE L1 -1 6120 6007 1448 180 68 24 chr13 68229585 68229879 -33643290 - AluJo SINE Alu -5 307 1 258 184 0 0 chr13 68232115 68232164 -33641005 - MIR SINE MIR -107 155 107 2684 137 12 9 chr13 68232167 68232589 -33640580 - MSTB LTR MaLR -2 424 2 7614 212 55 14 chr13 68232590 68233683 -33639486 - MSTB-int LTR MaLR 0 1651 604 216 0 0 0 chr13 68233683 68233707 -33639462 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1849 127 7 25 chr13 68233709 68233993 -33639176 - AluSx SINE Alu -33 279 1 7614 212 55 14 chr13 68233993 68234483 -33638686 - MSTB-int LTR MaLR -1047 604 1 2025 172 83 8 chr13 68234483 68234879 -33638290 - MSTB LTR MaLR 0 426 1 209 271 87 96 chr13 68235113 68235306 -33637863 - L2 LINE L2 -78 3235 3043 2023 209 71 34 chr13 68235306 68235896 -33637273 + LTR9 LTR ERV1 1 612 0 209 271 87 96 chr13 68235896 68235931 -33637238 - L2 LINE L2 -270 3043 3009 586 237 40 20 chr13 68235956 68236108 -33637061 - MER105 DNA DNA -6 198 44 402 252 78 0 chr13 68236108 68236211 -33636958 + MER5A DNA MER1_type 3 113 -76 1316 265 56 56 chr13 68236232 68236839 -33636330 - L2 LINE L2 -338 2976 2370 301 215 76 0 chr13 68236835 68236914 -33636255 - L2 LINE L2 -1107 2207 2123 * 1122 238 152 56 chr13 68237061 68237540 -33635629 - MLT1F1 LTR MaLR 0 567 18 1464 260 170 29 chr13 68237571 68239399 -33633770 - L1ME LINE L1 -567 5668 3585 305 256 124 54 chr13 68239458 68240052 -33633117 - L1MEc LINE L1 -3594 2621 2041 479 316 78 77 chr13 68240355 68240802 -33632367 - L2 LINE L2 -1 3312 2861 845 249 6 0 chr13 68240802 68240979 -33632190 - MER45A DNA AcHobo 0 178 1 479 316 78 77 chr13 68240979 68241090 -33632079 - L2 LINE L2 -452 2861 2752 728 267 33 9 chr13 68241100 68241310 -33631859 - MIR SINE MIR 0 262 48 239 278 120 37 chr13 68241314 68241422 -33631747 - L2 LINE L2 -583 2731 2615 1641 204 0 13 chr13 68241724 68242038 -33631131 - AluJo SINE Alu -2 310 1 1524 93 62 16 chr13 68242046 68242303 -33630866 - L1MA5A LINE L1 -3 6294 6026 577 281 107 0 chr13 68243266 68243490 -33629679 - LTR16C LTR ERVL -4 487 240 585 242 180 0 chr13 68243636 68243814 -33629355 + MER58C DNA MER1_type 5 214 -1 364 308 70 51 chr13 68243829 68244202 -33628967 - MLT1I LTR MaLR -29 380 1 25 31 0 0 chr13 68244639 68244671 -33628498 + AT_rich Low_complexity Low_complexity 1 32 0 1190 256 24 3 chr13 68245046 68245374 -33627795 - MLT1E3 LTR MaLR 0 624 290 2337 51 40 0 chr13 68245384 68245680 -33627489 - AluY SINE Alu -3 308 1 405 138 15 0 chr13 68245745 68245810 -33627359 + AluS SINE Alu 1 66 -243 1656 94 0 5 chr13 68246270 68246482 -33626687 - AluSc SINE Alu -26 283 73 1470 182 49 39 chr13 68246608 68247916 -33625253 - SVA Other Other -518 868 432 537 113 12 0 chr13 68247926 68248006 -33625163 - AluSc SINE Alu -225 84 4 596 51 0 0 chr13 68249077 68249156 -33624013 + L1PB4 LINE L1 2944 3022 -3124 * 8210 170 15 17 chr13 68249151 68251692 -33621477 + L1PB4 LINE L1 3622 6155 -1 319 283 25 0 chr13 68251819 68251939 -33621230 + HAL1 LINE L1 1518 1640 -867 22 0 0 0 chr13 68251973 68251995 -33621174 + AT_rich Low_complexity Low_complexity 1 22 0 314 250 25 0 chr13 68252480 68252560 -33620609 + L1MEc LINE L1 1259 1340 -5056 1871 292 14 32 chr13 68252597 68253340 -33619829 + L1PA15-16 LINE L1 0 728 -6120 722 330 23 33 chr13 68253447 68253981 -33619188 + L1PA15-16 LINE L1 781 1569 -5279 5428 211 48 19 chr13 68253982 68256767 -33616402 + L1M2 LINE L1 1470 4337 -2511 279 0 0 0 chr13 68256768 68256799 -33616370 + (T)n Simple_repeat Simple_repeat 1 31 0 1455 29 0 0 chr13 68257211 68257384 -33615785 - L1PA3 LINE L1 0 6155 5983 2008 196 6 3 chr13 68257576 68257939 -33615230 - MLT1A1 LTR MaLR 0 365 2 22 0 0 0 chr13 68258252 68258274 -33614895 + AT_rich Low_complexity Low_complexity 1 22 0 1957 169 0 0 chr13 68258366 68258674 -33614495 + AluJo SINE Alu 1 308 -4 319 254 136 8 chr13 68258753 68258871 -33614298 - MLT1J LTR MaLR -332 179 47 349 211 63 21 chr13 68259145 68259240 -33613929 - MER77 LTR ERV1 -445 160 62 216 222 0 0 chr13 68259260 68259296 -33613873 - MIR SINE MIR -124 84 49 213 384 78 41 chr13 68259292 68259563 -33613606 - L3 LINE CR1 -455 1122 842 * 339 324 9 9 chr13 68262764 68262869 -33610300 + MIR3 SINE MIR 98 202 -6 22 35 0 0 chr13 68263752 68263781 -33609388 + AT_rich Low_complexity Low_complexity 1 29 0 239 336 56 14 chr13 68264772 68264915 -33608254 + MIR3 SINE MIR 60 208 0 2199 112 0 3 chr13 68265089 68265384 -33607785 + AluSp SINE Alu 1 294 -19 426 226 212 77 chr13 68265658 68265932 -33607237 - L2 LINE L2 -51 3262 2952 2533 135 20 5 chr13 68267062 68267506 -33605663 + Tigger1 DNA MER2_type 1968 2418 0 525 133 18 53 chr13 68267566 68267679 -33605490 + MLT1D LTR MaLR 392 500 -5 1337 211 0 0 chr13 68268449 68268700 -33604469 - L1PB4 LINE L1 -2 6154 5904 358 342 52 85 chr13 68269881 68270188 -33602981 - L2 LINE L2 -8 3264 2968 529 146 61 4 chr13 68270195 68270329 -33602840 - L1PA12 LINE L1 -85 6069 5934 331 252 69 23 chr13 68270723 68270854 -33602315 - MIR SINE MIR -11 251 115 534 227 22 65 chr13 68270870 68271055 -33602114 + MER5B DNA MER1_type 2 178 0 21 36 0 0 chr13 68271194 68271222 -33601947 + AT_rich Low_complexity Low_complexity 1 28 0 1945 191 57 24 chr13 68272290 68272670 -33600499 + MSTB1 LTR MaLR 1 398 -34 2394 94 0 0 chr13 68272670 68272979 -33600190 - AluY SINE Alu -2 309 1 1945 191 57 24 chr13 68272979 68273016 -33600153 + MSTB1 LTR MaLR 398 432 0 8866 164 55 86 chr13 68273017 68274625 -33598544 + L1MC3 LINE L1 5563 7164 -621 260 304 0 0 chr13 68274625 68274704 -33598465 + MLT1F1 LTR MaLR 47 125 -442 8866 164 55 86 chr13 68274704 68275290 -33597879 + L1MC3 LINE L1 7164 7766 -19 902 271 65 35 chr13 68275377 68275868 -33597301 - MLT1J LTR MaLR 0 511 6 2845 108 24 5 chr13 68276791 68277209 -33595960 - MSTA LTR MaLR -2 426 1 495 0 0 0 chr13 68277246 68277301 -33595868 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1113 186 4 12 chr13 68277301 68277548 -33595621 - L1MA4 LINE L1 -14 6286 6042 12829 39 0 0 chr13 68277655 68279304 -33593865 - L1P LINE L1 -3269 2877 1229 6255 24 1 0 chr13 68279293 68280570 -33592599 + L1PA3 LINE L1 4732 6009 -146 * 845 70 0 0 chr13 68281192 68281306 -33591863 - L1PA5 LINE L1 0 6154 6041 308 343 38 9 chr13 68281398 68281503 -33591666 + L2 LINE L2 3179 3286 -27 1638 180 39 3 chr13 68282886 68283169 -33590000 - AluJb SINE Alu -19 293 1 322 297 23 31 chr13 68284002 68284130 -33589039 + L2 LINE L2 3187 3313 0 21 0 0 0 chr13 68284556 68284577 -33588592 + AT_rich Low_complexity Low_complexity 1 21 0 250 383 61 35 chr13 68286087 68286348 -33586821 - L2 LINE L2 -19 3253 2986 189 74 0 0 chr13 68286354 68286381 -33586788 + (TG)n Simple_repeat Simple_repeat 2 28 0 322 309 167 24 chr13 68286510 68286720 -33586449 - L2 LINE L2 -363 2951 2712 346 275 72 48 chr13 68287412 68287579 -33585590 + HAL1 LINE L1 1136 1306 -1201 247 297 88 20 chr13 68287729 68287877 -33585292 + HAL1 LINE L1 1499 1656 -851 239 242 55 11 chr13 68288148 68288239 -33584930 + HAL1b LINE L1 746 840 -508 2134 127 7 0 chr13 68291192 68291513 -33581656 + AluSx SINE Alu 1 312 0 295 327 29 10 chr13 68291644 68291748 -33581421 - MIR SINE MIR -122 140 35 622 215 149 76 chr13 68291924 68292240 -33580929 + MER58B DNA MER1_type 3 341 0 299 318 178 45 chr13 68292730 68292993 -33580176 + L2 LINE L2 1458 1685 -1629 224 30 30 0 chr13 68292993 68293026 -33580143 + (CAA)n Simple_repeat Simple_repeat 2 35 0 299 318 178 45 chr13 68293026 68293895 -33579274 + L2 LINE L2 1685 2741 -573 248 0 31 0 chr13 68294227 68294259 -33578910 + (GA)n Simple_repeat Simple_repeat 1 33 0 5603 119 14 7 chr13 68294264 68295749 -33577420 + L1PA16 LINE L1 4675 6166 0 235 297 0 11 chr13 68295797 68295888 -33577281 + CT-rich Low_complexity Low_complexity 2 91 0 475 250 94 6 chr13 68296043 68296223 -33576946 - L1ME2 LINE L1 -136 6028 5833 254 281 198 0 chr13 68296221 68296317 -33576852 - L1ME2 LINE L1 -558 5606 5492 * 1072 252 20 63 chr13 68296319 68296668 -33576501 + MLT1G LTR MaLR 192 525 -65 394 270 159 5 chr13 68296682 68296871 -33576298 - HAL1 LINE L1 -1938 569 352 424 310 40 80 chr13 68296937 68297163 -33576006 - HAL1 LINE L1 -2290 217 1 22 0 0 0 chr13 68299550 68299572 -33573597 + AT_rich Low_complexity Low_complexity 1 22 0 308 358 67 6 chr13 68299768 68299947 -33573222 + L2 LINE L2 2706 2895 -419 2060 289 140 26 chr13 68299947 68300206 -33572963 - L2 LINE L2 0 3313 3085 1826 145 7 11 chr13 68300206 68300489 -33572680 + AluSx SINE Alu 1 282 -30 2060 289 140 26 chr13 68300489 68301527 -33571642 - L2 LINE L2 -228 3085 1855 472 42 84 0 chr13 68301582 68301653 -33571516 + L1PA13 LINE L1 6082 6158 -5 255 390 103 0 chr13 68301888 68302034 -33571135 + MIR SINE MIR 46 206 -56 414 105 0 35 chr13 68302307 68302393 -33570776 + (TC)n Simple_repeat Simple_repeat 2 84 0 5436 147 25 5 chr13 68302400 68303046 -33570123 - L1PB2 LINE L1 -3 6148 5517 195 69 0 0 chr13 68303046 68303075 -33570094 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 5436 147 25 5 chr13 68303075 68303938 -33569231 - L1PB2 LINE L1 -634 5517 4608 209 277 0 15 chr13 68303940 68304005 -33569164 + CT-rich Low_complexity Low_complexity 3 66 0 1031 223 76 0 chr13 68307635 68307859 -33565310 + MIR SINE MIR 6 246 -16 535 130 15 30 chr13 68308125 68308256 -33564913 + CT-rich Low_complexity Low_complexity 4 132 0 698 219 0 0 chr13 68308265 68308388 -33564781 - FLAM_A SINE Alu -9 124 2 265 320 143 13 chr13 68308413 68308644 -33564525 + L2 LINE L2 3041 3301 -12 192 77 0 0 chr13 68308687 68308713 -33564456 + (TTA)n Simple_repeat Simple_repeat 3 28 0 2226 242 67 35 chr13 68309115 68310614 -33562555 + L1ME1 LINE L1 4382 5941 -225 1810 128 0 0 chr13 68310614 68310856 -33562313 + AluSg SINE Alu 21 262 -48 2226 242 67 35 chr13 68310856 68311085 -33562084 + L1ME1 LINE L1 5941 6161 -5 1710 187 7 10 chr13 68311129 68311428 -33561741 - AluJo SINE Alu -12 300 3 351 97 0 16 chr13 68311578 68311640 -33561529 - L1PA7 LINE L1 -3 6151 6091 315 0 0 0 chr13 68311753 68311788 -33561381 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr13 68311787 68311816 -33561353 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 665 315 51 0 chr13 68312837 68313034 -33560135 + MIR SINE MIR 5 211 -51 249 291 92 15 chr13 68314216 68314422 -33558747 + MLT1J2 LTR MaLR 13 234 -216 2040 88 0 61 chr13 68314447 68314742 -33558427 + AluSg SINE Alu 1 277 -33 207 0 0 0 chr13 68314745 68314768 -33558401 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 268 269 21 54 chr13 68315121 68315214 -33557955 - L3 LINE CR1 -2 1575 1486 306 94 0 38 chr13 68315503 68315556 -33557613 + Tigger1 DNA MER2_type 671 721 -1697 4552 99 9 92 chr13 68315556 68316455 -33556714 + Tigger1 DNA MER2_type 1093 1916 -502 21 0 0 0 chr13 68316716 68316737 -33556432 + AT_rich Low_complexity Low_complexity 1 21 0 2279 92 3 3 chr13 68317702 68317996 -33555173 - AluSq SINE Alu -19 294 1 218 331 184 14 chr13 68318108 68318404 -33554765 + L2 LINE L2 2914 3271 -1 303 93 0 0 chr13 68318933 68318976 -33554193 + (T)n Simple_repeat Simple_repeat 1 43 0 5116 153 20 8 chr13 68319688 68320712 -33552457 + L1PA16 LINE L1 5129 6164 -2 25 51 0 0 chr13 68320713 68320752 -33552417 + AT_rich Low_complexity Low_complexity 1 39 0 352 344 76 42 chr13 68320877 68321219 -33551950 + L1MC4 LINE L1 5716 6065 -1743 1160 160 24 38 chr13 68322592 68322879 -33550290 + L1MA4 LINE L1 6014 6296 -4 968 202 101 0 chr13 68323022 68323220 -33549949 + MER58A DNA MER1_type 7 224 0 792 247 173 65 chr13 68324783 68324879 -33548290 + L2 LINE L2 2633 2717 -596 1550 164 9 70 chr13 68324879 68325208 -33547961 - AluJo SINE Alu -3 309 1 792 247 173 65 chr13 68325208 68325725 -33547444 + L2 LINE L2 2717 3311 -2 874 292 61 49 chr13 68326224 68326837 -33546332 - MLT2F LTR ERVL -2 661 3 198 313 94 39 chr13 68326914 68327042 -33546127 + MIR3 SINE MIR 33 167 -41 289 154 62 15 chr13 68327212 68327277 -33545892 + L1MC5 LINE L1 7711 7778 -183 17112 186 9 50 chr13 68327281 68329431 -33543738 + L1PA15-16 LINE L1 1 2236 -4613 2118 117 21 0 chr13 68329431 68329721 -33543448 + AluSx SINE Alu 1 296 -16 17112 186 9 50 chr13 68329721 68330467 -33542702 + L1PA15-16 LINE L1 2236 3010 -3839 216 67 0 0 chr13 68330467 68330497 -33542672 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 17112 186 9 50 chr13 68330497 68333093 -33540076 + L1PA15-16 LINE L1 3010 5325 -1524 6802 160 42 22 chr13 68333259 68333445 -33539724 - L1MA4 LINE L1 -314 7405 7224 237 65 0 0 chr13 68333445 68333476 -33539693 + (TA)n Simple_repeat Simple_repeat 2 32 0 6802 160 42 22 chr13 68333476 68335367 -33537802 - L1MA4 LINE L1 -495 7224 5303 300 93 0 0 chr13 68335375 68335418 -33537751 - L1MA4 LINE L1 -3417 4148 4106 184 324 14 0 chr13 68336453 68336527 -33536642 - MIR SINE MIR -167 95 21 297 263 0 0 chr13 68337125 68337205 -33535964 - L1MA4 LINE L1 -3947 3618 3539 206 0 69 0 chr13 68337211 68337240 -33535929 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2186 216 36 31 chr13 68337613 68338163 -33535006 - MER77 LTR ERV1 -4 601 49 252 0 0 0 chr13 68339028 68339056 -33534113 + (TA)n Simple_repeat Simple_repeat 2 29 0 1612 189 3 20 chr13 68339126 68339427 -33533742 - AluJb SINE Alu -16 296 1 1122 230 114 111 chr13 68339799 68340833 -33532336 - L1MC5 LINE L1 -311 7650 6614 1789 97 22 11 chr13 68341052 68341319 -33531850 + L1P4 LINE L1 5420 5689 -479 1456 229 14 3 chr13 68341337 68341700 -33531469 + L1PBa LINE L1 6 372 -6491 9440 159 107 1 chr13 68341710 68344605 -33528564 + L1PBa LINE L1 902 4108 -2754 2227 240 98 4 chr13 68344762 68345478 -33527691 - L1MEc LINE L1 -1888 4327 3545 344 203 0 0 chr13 68345495 68345564 -33527605 - L1MEc LINE L1 -4008 2388 2320 364 250 31 39 chr13 68345589 68345717 -33527452 - MLT1L LTR MaLR -339 276 150 550 263 105 12 chr13 68345720 68345891 -33527278 + MER5A DNA MER1_type 2 188 -1 215 154 26 0 chr13 68346010 68346049 -33527120 - MER5A DNA MER1_type -92 97 58 1218 208 104 3 chr13 68346166 68346474 -33526695 + MER58B DNA MER1_type 3 341 0 350 327 64 13 chr13 68348264 68348420 -33524749 + MER5A DNA MER1_type 21 184 -5 224 287 125 73 chr13 68348567 68348703 -33524466 - MIR SINE MIR -118 144 2 1825 128 65 44 chr13 68348966 68349333 -33523836 + THE1C LTR MaLR 1 375 0 1090 250 61 27 chr13 68349502 68349830 -33523339 - MER58B DNA MER1_type 0 341 3 412 100 0 0 chr13 68350473 68350533 -33522636 - L1PA10 LINE L1 -108 6060 6001 * 963 42 8 0 chr13 68350532 68350652 -33522517 + L1PA10 LINE L1 5846 5966 -202 233 385 44 0 chr13 68351327 68351418 -33521751 - L2 LINE L2 -7 3306 3212 22 0 0 0 chr13 68353605 68353627 -33519542 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr13 68354048 68354068 -33519101 + (TG)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr13 68354191 68354220 -33518949 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr13 68355802 68355830 -33517339 + AT_rich Low_complexity Low_complexity 1 28 0 303 161 62 3 chr13 68355948 68356020 -33517149 - L1MB1 LINE L1 0 6168 6101 1097 229 31 12 chr13 68356611 68356869 -33516300 + L1MD2 LINE L1 5555 5817 -425 281 149 194 0 chr13 68356882 68356949 -33516220 + LTR16C LTR ERVL 405 484 -7 767 234 47 70 chr13 68357066 68357323 -33515846 + L1MD2 LINE L1 6088 6338 -21 459 130 0 0 chr13 68359072 68359141 -33514028 - AluSq/x SINE Alu -180 132 64 338 214 10 61 chr13 68359622 68359720 -33513449 - L2 LINE L2 0 3313 3221 304 198 154 0 chr13 68361584 68361675 -33511494 - MIR SINE MIR -76 186 82 221 242 16 65 chr13 68361978 68362040 -33511129 + L2 LINE L2 3236 3294 -19 688 310 61 8 chr13 68363357 68363618 -33509551 - MLT1I LTR MaLR -134 275 1 2397 37 7 7 chr13 68363803 68364097 -33509072 + AluY SINE Alu 3 296 -15 275 316 17 23 chr13 68364102 68364279 -33508890 - L1MCa LINE L1 -3315 3111 2936 225 208 52 0 chr13 68364282 68364359 -33508810 + (TA)n Simple_repeat Simple_repeat 2 82 0 328 291 156 47 chr13 68364369 68364644 -33508525 - L1MCa LINE L1 -3532 2894 2590 2163 290 140 42 chr13 68365277 68366630 -33506539 - HAL1 LINE L1 -6 2501 889 195 100 0 0 chr13 68366630 68366660 -33506509 + (TG)n Simple_repeat Simple_repeat 1 30 0 2163 290 140 42 chr13 68366660 68367307 -33505862 - HAL1 LINE L1 -1618 889 306 29628 94 23 15 chr13 68367759 68369051 -33504118 + L1PA7 LINE L1 734 2014 -4140 1987 131 0 3 chr13 68369051 68369357 -33503812 - AluSx SINE Alu 0 305 1 29628 94 23 15 chr13 68369357 68369686 -33503483 + L1PA7 LINE L1 2014 2339 -3815 183 42 0 0 chr13 68369686 68369710 -33503459 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29628 94 23 15 chr13 68369710 68373431 -33499738 + L1PA7 LINE L1 2339 6116 -38 29 60 0 0 chr13 68374494 68374544 -33498625 + AT_rich Low_complexity Low_complexity 1 50 0 1316 192 47 44 chr13 68374586 68374946 -33498223 - L1MB8 LINE L1 -10 6168 5808 3617 107 12 24 chr13 68374984 68375313 -33497856 - L1PA13 LINE L1 -8 6155 5834 1719 228 78 48 chr13 68375313 68375849 -33497320 - MLT2B3 LTR ERVL -1 553 2 3617 107 12 24 chr13 68375849 68376097 -33497072 - L1PA13 LINE L1 -329 5834 5585 893 299 10 30 chr13 68376101 68376506 -33496663 - L1MB8 LINE L1 -366 5818 5422 * 1126 251 70 39 chr13 68376491 68377114 -33496055 - L1MCa LINE L1 -4636 1971 1143 330 162 50 101 chr13 68377127 68377226 -33495943 - LTR8 LTR ERV1 -545 146 53 235 250 94 81 chr13 68377234 68377394 -33495775 - LTR27 LTR ERV1 0 636 475 * 2206 201 17 64 chr13 68377393 68377974 -33495195 - LTR27 LTR ERV1 -80 556 3 1135 224 87 4 chr13 68377974 68378251 -33494918 - LTR27-int LTR ERV1 0 5217 4918 6143 125 26 17 chr13 68378256 68378741 -33494428 - LTR27-int LTR ERV1 -1226 3991 3512 1581 182 0 4 chr13 68378741 68379005 -33494164 - AluSx SINE Alu -49 263 1 6143 125 26 17 chr13 68379005 68379509 -33493660 - LTR27-int LTR ERV1 -1705 3512 2993 3200 182 20 72 chr13 68379518 68380211 -33492958 - MER52-int LTR ERV1 -6029 1062 406 489 231 169 36 chr13 68380199 68380424 -33492745 - MER52-int LTR ERV1 -6831 260 6 * 2464 180 129 12 chr13 68380575 68381133 -33492036 - LTR28 LTR ERV1 -422 598 1 2645 143 22 57 chr13 68381999 68382508 -33490661 - LTR8 LTR ERV1 -200 491 1 731 239 51 175 chr13 68382749 68383533 -33489636 + LTR8A LTR ERV1 34 720 -7 4192 201 38 2 chr13 68383600 68384583 -33488586 - L1PA15 LINE L1 -1 6815 5799 2012 160 19 32 chr13 68384586 68384955 -33488214 - THE1B LTR MaLR 0 364 1 10540 126 11 5 chr13 68384956 68386525 -33486644 - THE1B-int LTR MaLR -1 1579 1 414 161 25 25 chr13 68386535 68386616 -33486553 - THE1B LTR MaLR -8 367 287 11853 249 37 12 chr13 68386617 68390886 -33482283 - L1PA15 LINE L1 -1152 5645 1266 22 0 0 0 chr13 68390944 68390966 -33482203 + AT_rich Low_complexity Low_complexity 1 22 0 575 251 58 0 chr13 68392589 68392760 -33480409 + MER53 DNA DNA 9 189 0 227 191 0 0 chr13 68393618 68393660 -33479509 + GA-rich Low_complexity Low_complexity 3 44 0 2221 117 0 0 chr13 68394576 68394884 -33478285 + AluSg SINE Alu 1 308 -2 23 0 0 0 chr13 68395313 68395336 -33477833 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 68395412 68395434 -33477735 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 68395468 68395496 -33477673 + AT_rich Low_complexity Low_complexity 1 28 0 56 16 0 0 chr13 68395599 68395662 -33477507 + AT_rich Low_complexity Low_complexity 1 63 0 21 36 0 0 chr13 68396466 68396494 -33476675 + AT_rich Low_complexity Low_complexity 1 28 0 331 280 74 40 chr13 68397328 68397503 -33475666 - MLT1J2 LTR MaLR -240 210 30 24 67 0 0 chr13 68397555 68397600 -33475569 + AT_rich Low_complexity Low_complexity 1 45 0 2021 89 7 14 chr13 68398923 68399238 -33473931 - AluSc SINE Alu 0 313 1 2504 120 3 11 chr13 68399705 68400072 -33473097 + THE1B LTR MaLR 1 364 0 278 347 52 19 chr13 68400220 68400433 -33472736 - L2 LINE L2 -1269 2045 1826 21 0 0 0 chr13 68400662 68400683 -33472486 + AT_rich Low_complexity Low_complexity 1 21 0 381 283 36 24 chr13 68400967 68401218 -33471951 + L1M4 LINE L1 2607 2860 -3286 229 332 48 31 chr13 68401312 68401498 -33471671 + L1M4 LINE L1 3437 3633 -2513 1937 135 17 0 chr13 68401498 68401787 -33471382 - AluSx SINE Alu -18 294 1 229 332 48 31 chr13 68401787 68401952 -33471217 + L1M4 LINE L1 3633 3794 -2352 * 6241 247 76 49 chr13 68401943 68403877 -33469292 + L1MA4A LINE L1 85 2071 -4778 * 6350 241 96 19 chr13 68403872 68406620 -33466549 + L1MA4A LINE L1 2693 5910 -938 4957 173 21 18 chr13 68406623 68407591 -33465578 + L1MA4A LINE L1 6034 7004 -1 300 269 52 45 chr13 68407618 68407752 -33465417 + L1M4 LINE L1 3797 3931 -2215 333 311 43 38 chr13 68407837 68408046 -33465123 + L1M4 LINE L1 4103 4312 -1834 1663 166 8 91 chr13 68408096 68408408 -33464761 - MER67D LTR ERV1 -150 364 90 2201 109 0 3 chr13 68408408 68408698 -33464471 + AluSq SINE Alu 1 291 -22 207 0 0 0 chr13 68408698 68408721 -33464448 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2201 109 0 3 chr13 68408721 68408734 -33464435 + AluSq SINE Alu 291 303 -10 1663 166 8 91 chr13 68408734 68408818 -33464351 - MER67D LTR ERV1 -424 90 1 238 303 20 0 chr13 68408889 68408988 -33464181 - L1M4 LINE L1 -3302 2844 2744 291 157 0 0 chr13 68409053 68409104 -33464065 + (CATA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr13 68410696 68410726 -33462443 + AT_rich Low_complexity Low_complexity 1 30 0 1216 199 13 127 chr13 68411040 68411433 -33461736 + MLT1A1 LTR MaLR 18 365 0 2042 147 39 30 chr13 68412081 68412442 -33460727 - THE1B LTR MaLR 0 364 1 276 241 0 0 chr13 68412824 68412882 -33460287 - LTR40a LTR ERVL -25 494 437 635 135 0 0 chr13 68412887 68412983 -33460186 - MLT2C1 LTR ERVL -68 329 234 495 122 99 30 chr13 68412989 68413120 -33460049 - L1MA7 LINE L1 0 6291 6152 294 217 0 0 chr13 68413106 68413175 -33459994 - L1PB4 LINE L1 0 6156 6088 * 3974 178 24 43 chr13 68413172 68413500 -33459669 - L1MA8 LINE L1 -137 6154 5821 1932 145 0 0 chr13 68413500 68413804 -33459365 - AluSx SINE Alu 0 306 3 3974 178 24 43 chr13 68413804 68414380 -33458789 - L1MA8 LINE L1 -470 5821 5266 474 231 6 16 chr13 68414387 68414569 -33458600 + (TA)n Simple_repeat Simple_repeat 1 180 0 258 154 0 135 chr13 68414574 68414678 -33458491 - L1MC4 LINE L1 -1339 6703 6614 224 265 0 0 chr13 68414678 68414727 -33458442 + (TA)n Simple_repeat Simple_repeat 1 49 0 448 249 12 12 chr13 68414739 68414904 -33458265 + (CATA)n Simple_repeat Simple_repeat 3 167 0 265 298 12 12 chr13 68414919 68415080 -33458089 + (CATA)n Simple_repeat Simple_repeat 3 163 0 * 366 303 0 0 chr13 68415057 68415232 -33457937 + (TA)n Simple_repeat Simple_repeat 2 176 0 232 322 22 0 chr13 68415234 68415324 -33457845 - L1MC4 LINE L1 -1337 6705 6614 252 256 0 23 chr13 68415324 68415410 -33457759 + L1MC4 LINE L1 6614 6697 -1345 556 231 38 31 chr13 68415434 68415594 -33457575 + MLT1B LTR MaLR 1 161 -229 2734 13 0 6 chr13 68415606 68415917 -33457252 - AluYa5 SINE Alu -2 309 1 266 286 0 0 chr13 68415919 68415996 -33457173 - L1MA3 LINE L1 0 6305 6229 4142 184 20 6 chr13 68415997 68416846 -33456323 - L1MA8 LINE L1 -873 5273 4413 962 248 41 50 chr13 68416846 68416887 -33456282 - MLT1C LTR MaLR -151 316 276 2073 124 35 101 chr13 68416887 68417372 -33455797 - MLT2A2 LTR ERVL 0 453 1 962 248 41 50 chr13 68417372 68417649 -33455520 - MLT1C LTR MaLR -191 276 1 227 316 31 0 chr13 68418073 68418171 -33454998 + (TA)n Simple_repeat Simple_repeat 1 101 0 4980 70 22 1 chr13 68418220 68419231 -33453938 + MER11A LTR ERVK 1 1266 0 22 0 0 0 chr13 68419399 68419421 -33453748 + AT_rich Low_complexity Low_complexity 1 22 0 1445 255 14 39 chr13 68419716 68420155 -33453014 + L1ME1 LINE L1 5663 6090 -76 183 156 0 0 chr13 68420157 68420189 -33452980 + (CA)n Simple_repeat Simple_repeat 2 33 0 188 184 20 0 chr13 68421066 68421115 -33452054 + (TA)n Simple_repeat Simple_repeat 1 50 0 237 152 0 0 chr13 68421151 68421197 -33451972 - LTR66 LTR ERVL -168 442 397 279 344 0 55 chr13 68421458 68421641 -33451528 + ERVL LTR ERVL 3348 3520 -2244 427 372 0 6 chr13 68422209 68422392 -33450777 + ERVL LTR ERVL 4106 4287 -1367 2142 112 7 3 chr13 68422510 68422815 -33450354 + AluY SINE Alu 1 306 -5 30 59 0 0 chr13 68422827 68422878 -33450291 + AT_rich Low_complexity Low_complexity 1 51 0 292 279 19 10 chr13 68424077 68424181 -33448988 + CT-rich Low_complexity Low_complexity 2 106 0 1166 198 8 35 chr13 68424780 68425038 -33448131 + AluJo SINE Alu 32 282 -30 324 0 0 0 chr13 68425041 68425077 -33448092 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 39 68 0 0 chr13 68425312 68425386 -33447783 + AT_rich Low_complexity Low_complexity 1 74 0 251 254 52 46 chr13 68425710 68425883 -33447286 + L1ME3A LINE L1 1415 1588 -4808 565 307 88 10 chr13 68426377 68426865 -33446304 + L1ME3A LINE L1 2776 3301 -2914 356 363 127 14 chr13 68427012 68427436 -33445733 + L1ME3A LINE L1 3478 3949 -2266 26 30 0 0 chr13 68427752 68427785 -33445384 + AT_rich Low_complexity Low_complexity 1 33 0 624 322 37 3 chr13 68427811 68428193 -33444976 + L1ME3A LINE L1 4446 4840 -1375 585 280 33 62 chr13 68428186 68428490 -33444679 + L1ME3A LINE L1 5935 6229 -10 * 25 0 0 0 chr13 68428846 68428871 -33444298 + AT_rich Low_complexity Low_complexity 1 25 0 2757 117 3 7 chr13 68430186 68430644 -33442525 + L1P5 LINE L1 5279 5735 -416 2011 184 45 9 chr13 68430650 68431074 -33442095 - L1MA7 LINE L1 -2 6289 5851 366 323 93 69 chr13 68431471 68431932 -33441237 - MLT1J LTR MaLR -14 497 26 244 359 0 0 chr13 68432172 68432250 -33440919 + MIR3 SINE MIR 124 201 -7 2265 178 11 25 chr13 68433440 68433879 -33439290 - Tigger2a DNA MER2_type -1 433 1 281 301 39 54 chr13 68433905 68434108 -33439061 - L1ME1 LINE L1 -76 6090 5891 27 0 0 0 chr13 68434235 68434262 -33438907 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr13 68434827 68434858 -33438311 + AT_rich Low_complexity Low_complexity 1 31 0 38 0 0 0 chr13 68435271 68435309 -33437860 + AT_rich Low_complexity Low_complexity 1 38 0 210 118 0 0 chr13 68435918 68435952 -33437217 + (TG)n Simple_repeat Simple_repeat 2 35 0 277 295 63 11 chr13 68436909 68437004 -33436165 - MER5A DNA MER1_type -80 109 10 198 103 0 0 chr13 68438651 68438680 -33434489 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 113 30 65 chr13 68438697 68438865 -33434304 + (TA)n Simple_repeat Simple_repeat 1 162 0 559 171 34 17 chr13 68438925 68439100 -33434069 + (TA)n Simple_repeat Simple_repeat 2 179 0 22 56 0 0 chr13 68439118 68439154 -33434015 + AT_rich Low_complexity Low_complexity 1 36 0 324 294 0 29 chr13 68439159 68439261 -33433908 + L1MC4 LINE L1 6604 6702 -1340 300 287 0 0 chr13 68439261 68439362 -33433807 + (CATA)n Simple_repeat Simple_repeat 1 101 0 * 624 224 25 0 chr13 68439339 68439586 -33433583 + (CATATA)n Simple_repeat Simple_repeat 1 253 0 236 322 0 0 chr13 68439586 68439676 -33433493 - L1MC4 LINE L1 -1339 6703 6614 361 340 101 5 chr13 68440105 68440293 -33432876 + HERVL LTR ERVL 3638 3843 -1811 24 0 0 0 chr13 68440485 68440509 -33432660 + AT_rich Low_complexity Low_complexity 1 24 0 265 333 53 18 chr13 68441092 68441206 -33431963 + L2 LINE L2 2966 3083 -230 21 71 0 0 chr13 68442203 68442245 -33430924 + AT_rich Low_complexity Low_complexity 1 42 0 966 243 123 78 chr13 68442322 68442666 -33430503 - MLT1D LTR MaLR -17 488 118 2343 47 0 20 chr13 68442666 68442967 -33430202 + AluY SINE Alu 1 295 -16 966 243 123 78 chr13 68442967 68443070 -33430099 - MLT1D LTR MaLR -387 118 21 292 43 43 0 chr13 68443094 68443140 -33430029 + (CA)n Simple_repeat Simple_repeat 2 49 0 262 306 0 24 chr13 68443254 68443339 -33429830 + CT-rich Low_complexity Low_complexity 2 84 0 2122 176 72 17 chr13 68444240 68444644 -33428525 - MSTB LTR MaLR 0 426 1 901 265 98 41 chr13 68444691 68445201 -33427968 + L1MC4 LINE L1 7275 7813 -229 27 0 0 0 chr13 68445524 68445551 -33427618 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr13 68445868 68445903 -33427266 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 68447313 68447337 -33425832 + AT_rich Low_complexity Low_complexity 1 24 0 2976 104 32 9 chr13 68447555 68447997 -33425172 - LTR8 LTR ERV1 0 691 240 304 338 58 59 chr13 68447997 68448362 -33424807 + L1MEc LINE L1 172 536 -5860 2201 119 58 0 chr13 68448362 68448706 -33424463 + THE1B LTR MaLR 1 364 0 304 338 58 59 chr13 68448706 68449187 -33423982 + L1MEc LINE L1 536 1017 -5379 665 237 57 0 chr13 68449199 68449393 -33423776 + L1MCa LINE L1 1 205 -6221 314 176 14 0 chr13 68449399 68449473 -33423696 + L1MA9 LINE L1 6217 6291 -21 704 280 133 5 chr13 68449490 68449777 -33423392 + L1MC/D LINE L1 5478 5801 -397 6939 166 30 17 chr13 68449815 68451067 -33422102 - Tigger1 DNA MER2_type -1149 1269 1 1555 151 81 7 chr13 68451160 68451431 -33421738 - AluSx SINE Alu -15 297 7 23 54 0 0 chr13 68451507 68451544 -33421625 + AT_rich Low_complexity Low_complexity 1 37 0 38 22 0 0 chr13 68452080 68452125 -33421044 + AT_rich Low_complexity Low_complexity 1 45 0 225 220 40 0 chr13 68453645 68453695 -33419474 - L1MD3 LINE L1 -1325 6670 6619 23 33 0 0 chr13 68453850 68453880 -33419289 + AT_rich Low_complexity Low_complexity 1 30 0 1674 154 0 34 chr13 68454516 68454831 -33418338 - AluJb SINE Alu 0 305 1 679 244 85 0 chr13 68455111 68455275 -33417894 + MER45A DNA AcHobo 1 178 0 23 0 0 0 chr13 68455335 68455358 -33417811 + AT_rich Low_complexity Low_complexity 1 23 0 234 62 0 0 chr13 68456345 68456377 -33416792 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 268 229 46 23 chr13 68456393 68456568 -33416601 + (TA)n Simple_repeat Simple_repeat 2 180 0 33 0 0 0 chr13 68456573 68456606 -33416563 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr13 68457038 68457066 -33416103 + AT_rich Low_complexity Low_complexity 1 28 0 290 309 108 50 chr13 68457288 68457631 -33415538 - Charlie8 DNA MER1_type -1300 1117 755 500 288 138 44 chr13 68457757 68458036 -33415133 + MLT1F LTR MaLR 145 467 -75 2049 137 18 3 chr13 68458036 68458364 -33414805 - MER1B DNA MER1_type -3 334 2 500 288 138 44 chr13 68458364 68458445 -33414724 + MLT1F LTR MaLR 467 539 -3 280 245 9 57 chr13 68458517 68458623 -33414546 + L1ME3A LINE L1 6069 6169 -1 23 33 0 0 chr13 68458626 68458656 -33414513 + AT_rich Low_complexity Low_complexity 1 30 0 1434 191 58 26 chr13 68460299 68460677 -33412492 + MLT1B LTR MaLR 1 390 0 372 223 0 43 chr13 68461248 68461342 -33411827 - L1MC4 LINE L1 -1338 6704 6615 34 55 0 0 chr13 68461381 68461436 -33411733 + AT_rich Low_complexity Low_complexity 1 55 0 641 281 42 107 chr13 68461728 68462252 -33410917 + MER110 LTR ERV1 2 491 0 2517 178 22 0 chr13 68463420 68463910 -33409259 - L1MA5 LINE L1 -2 6298 5798 359 348 71 5 chr13 68465522 68465706 -33407463 - MLT1I LTR MaLR -19 390 195 990 271 252 63 chr13 68465754 68466676 -33406493 - MER52A LTR ERV1 0 1755 660 1551 150 14 32 chr13 68467486 68467766 -33405403 - MER4D LTR ERV1 -4 868 594 1225 125 5 26 chr13 68467764 68467804 -33405365 - MER4D LTR ERV1 -682 190 151 * 3309 141 23 25 chr13 68467804 68468405 -33404764 - MER4A LTR ERV1 0 600 1 1225 125 5 26 chr13 68468405 68468556 -33404613 - MER4D LTR ERV1 -721 151 3 387 202 25 84 chr13 68468923 68469042 -33404127 - MIR SINE MIR -66 196 85 1697 230 162 39 chr13 68469815 68470551 -33402618 + LTR1B LTR ERV1 1 826 0 189 74 0 0 chr13 68471268 68471295 -33401874 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 27 49 0 0 chr13 68471443 68471484 -33401685 + AT_rich Low_complexity Low_complexity 1 41 0 564 222 90 108 chr13 68471550 68472005 -33401164 - LTR7 LTR ERV1 0 450 4 431 350 93 5 chr13 68472023 68472217 -33400952 - MIR SINE MIR 0 262 52 2147 109 0 7 chr13 68472924 68473228 -33399941 + AluSg SINE Alu 1 302 -8 184 299 104 62 chr13 68474135 68474279 -33398890 + MER5A DNA MER1_type 18 167 -22 * 191 273 121 61 chr13 68474151 68474283 -33398886 - MER5B DNA MER1_type -22 156 17 353 316 21 28 chr13 68475024 68475312 -33397857 + L1M4 LINE L1 4437 4722 -1424 1087 179 69 19 chr13 68475335 68475457 -33397712 + L1MA9 LINE L1 6038 6152 -160 255 103 0 0 chr13 68475457 68475496 -33397673 + (CA)n Simple_repeat Simple_repeat 2 40 0 1087 179 69 19 chr13 68475496 68475635 -33397534 + L1MA9 LINE L1 6152 6312 0 475 310 98 24 chr13 68475741 68475996 -33397173 + LTR16B LTR ERVL 190 463 -1 1610 211 126 70 chr13 68476748 68477335 -33395834 - MLT1E2 LTR MaLR 0 626 7 2179 81 3 50 chr13 68477742 68477927 -33395242 - AluSg SINE Alu -4 306 141 2612 30 3 0 chr13 68477927 68478229 -33394940 - AluY SINE Alu -6 305 3 2179 81 3 50 chr13 68478229 68478364 -33394805 - AluSg SINE Alu -169 141 1 711 229 113 14 chr13 68478465 68478758 -33394411 + MER33 DNA MER1_type 3 324 0 25 0 0 0 chr13 68478861 68478886 -33394283 + AT_rich Low_complexity Low_complexity 1 25 0 1895 143 0 11 chr13 68479716 68480002 -33393167 + AluSg SINE Alu 2 284 -26 847 0 0 0 chr13 68480011 68480107 -33393062 - L1PA2 LINE L1 -350 5805 5710 2901 24 0 0 chr13 68480107 68480442 -33392727 + L1PA2 LINE L1 5812 6150 -5 24 32 0 0 chr13 68480442 68480473 -33392696 + AT_rich Low_complexity Low_complexity 1 31 0 921 309 65 0 chr13 68480745 68481069 -33392100 + MER2 DNA MER2_type 1 345 0 28 71 0 0 chr13 68481412 68481468 -33391701 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr13 68481744 68481767 -33391402 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 68481999 68482028 -33391141 + AT_rich Low_complexity Low_complexity 1 29 0 364 252 0 106 chr13 68482043 68482166 -33391003 + MLT1J LTR MaLR 231 340 -171 35 78 0 0 chr13 68482450 68482527 -33390642 + AT_rich Low_complexity Low_complexity 1 77 0 301 148 16 0 chr13 68483301 68483362 -33389807 - MER57A LTR ERV1 0 403 342 2755 238 11 12 chr13 68483365 68484024 -33389145 - LTR23-int LTR ERV1 -2047 5490 4833 872 181 130 120 chr13 68484028 68484437 -33388732 - LTR23-int LTR ERV1 -3544 4576 4164 740 161 37 62 chr13 68484479 68484860 -33388309 - LTR23-int LTR ERV1 -2617 3714 1925 303 102 17 30 chr13 68484910 68485003 -33388166 - LTR23-int LTR ERV1 -2366 2888 2428 840 212 6 0 chr13 68485292 68485457 -33387712 - LTR23-int LTR ERV1 -2991 3340 3175 588 120 40 107 chr13 68485453 68485603 -33387566 - LTR23-int LTR ERV1 -3114 3217 3078 * 494 193 14 149 chr13 68485604 68485841 -33387328 - LTR23-int LTR ERV1 -3732 1391 1203 23 0 0 0 chr13 68485937 68485960 -33387209 + AT_rich Low_complexity Low_complexity 1 23 0 2249 140 17 6 chr13 68486748 68487106 -33386063 - THE1B LTR MaLR -2 362 1 9347 128 53 14 chr13 68487106 68488626 -33384543 - THE1B-int LTR MaLR 0 1580 1 2179 154 17 11 chr13 68488628 68488986 -33384183 - THE1B LTR MaLR -4 360 1 3591 236 90 43 chr13 68489090 68490378 -33382791 - L1MC3 LINE L1 -8 7777 6430 4060 215 44 11 chr13 68490594 68491637 -33381532 - L1 LINE L1 -1619 4527 3384 2436 235 78 24 chr13 68492121 68492747 -33380422 + L1PB1 LINE L1 504 1163 -5700 * 2606 221 10 7 chr13 68492741 68493335 -33379834 + L1PB1 LINE L1 3173 3768 -3094 * 5643 172 37 4 chr13 68493329 68494852 -33378317 + L1PB1 LINE L1 5284 6866 -1 2189 105 3 0 chr13 68494870 68495166 -33378003 + AluSp SINE Alu 1 297 -16 30 0 0 0 chr13 68495327 68495357 -33377812 + AT_rich Low_complexity Low_complexity 1 30 0 1515 177 42 53 chr13 68495599 68495978 -33377191 + THE1C LTR MaLR 1 375 0 331 311 41 28 chr13 68495983 68496301 -33376868 + L1MC4a LINE L1 3656 3977 -2169 23 68 0 0 chr13 68496303 68496347 -33376822 + AT_rich Low_complexity Low_complexity 1 44 0 483 300 109 6 chr13 68496651 68496964 -33376205 + L1MC4a LINE L1 5284 5628 -2180 576 228 23 23 chr13 68497027 68497198 -33375971 + L1MC4a LINE L1 5891 6061 -1747 438 278 80 16 chr13 68498807 68498994 -33374175 - L1MC4 LINE L1 -13 8029 7831 936 273 51 30 chr13 68499459 68499840 -33373329 - L1MC4 LINE L1 -889 6919 6569 747 17 51 8 chr13 68499840 68499957 -33373212 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 936 273 51 30 chr13 68499957 68500086 -33373083 - L1MC4 LINE L1 -1239 6569 6444 1251 173 74 26 chr13 68500363 68500634 -33372535 + AluJo SINE Alu 1 284 -28 207 0 0 0 chr13 68500634 68500657 -33372512 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr13 68500746 68500768 -33372401 + AT_rich Low_complexity Low_complexity 1 22 0 1674 116 25 4 chr13 68500769 68501044 -33372125 - L1MA1 LINE L1 -3 6299 6019 1964 143 7 0 chr13 68501125 68501425 -33371744 + AluJb SINE Alu 5 306 -6 2961 173 76 30 chr13 68501792 68502519 -33370650 - L1MA8 LINE L1 0 6291 5532 304 317 15 21 chr13 68502739 68502911 -33370258 - L1ME LINE L1 -387 5775 5605 25 65 0 0 chr13 68503009 68503055 -33370114 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr13 68503808 68503848 -33369321 + AT_rich Low_complexity Low_complexity 1 40 0 182 91 30 0 chr13 68504206 68504239 -33368930 + CT-rich Low_complexity Low_complexity 5 38 0 1376 258 121 23 chr13 68504713 68505225 -33367944 + L1MC4 LINE L1 6528 7089 -953 666 277 72 42 chr13 68505235 68505542 -33367627 + L1MC4 LINE L1 7255 7570 -472 999 174 47 54 chr13 68505552 68505810 -33367359 + L1MA9 LINE L1 6051 6306 -6 558 284 81 34 chr13 68505842 68506162 -33367007 + L1MC4 LINE L1 7565 7899 -143 216 0 0 0 chr13 68506315 68506339 -33366830 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr13 68507038 68507059 -33366110 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr13 68507375 68507412 -33365757 + AT_rich Low_complexity Low_complexity 1 37 0 1015 209 5 5 chr13 68507415 68507626 -33365543 - L1PB4 LINE L1 -14 6142 5932 1651 220 31 14 chr13 68507751 68508110 -33365059 + MLT1A1 LTR MaLR 1 365 0 28 29 0 0 chr13 68508340 68508375 -33364794 + AT_rich Low_complexity Low_complexity 1 35 0 298 132 0 0 chr13 68508397 68508450 -33364719 - LTR30 LTR ERV1 -118 604 552 802 232 28 51 chr13 68509494 68509763 -33363406 - MER31B LTR ERV1 -3 511 76 315 308 8 17 chr13 68509807 68509927 -33363242 + L1ME LINE L1 5605 5723 -447 206 351 0 0 chr13 68509949 68510023 -33363146 + CT-rich Low_complexity Low_complexity 3 76 0 423 0 0 0 chr13 68510094 68510141 -33363028 + (CA)n Simple_repeat Simple_repeat 2 48 0 894 209 11 22 chr13 68510149 68510331 -33362838 + MER31B LTR ERV1 1 180 -286 297 246 49 0 chr13 68511838 68511899 -33361270 - MER5A DNA MER1_type -18 171 108 1997 127 0 3 chr13 68511899 68512182 -33360987 - AluSx SINE Alu -14 298 17 309 26 0 0 chr13 68513071 68513109 -33360060 + (CA)n Simple_repeat Simple_repeat 1 38 0 292 262 33 0 chr13 68513114 68513175 -33359994 + MER21B LTR ERV1 34 96 -767 810 226 51 13 chr13 68513196 68513430 -33359739 - L1MA9 LINE L1 -131 6181 5939 1112 216 27 7 chr13 68513434 68513735 -33359434 - L1P LINE L1 -802 5344 5038 * 3579 228 52 7 chr13 68513721 68514634 -33358535 + L1P LINE L1 4056 5009 -1137 1175 243 8 19 chr13 68514646 68514905 -33358264 + MER21B LTR ERV1 103 358 -505 261 87 39 58 chr13 68514933 68515036 -33358133 + (CACAC)n Simple_repeat Simple_repeat 5 105 0 1151 224 59 72 chr13 68515074 68515318 -33357851 + MER21B LTR ERV1 369 608 -255 2448 98 27 8 chr13 68515318 68515686 -33357483 - THE1C LTR MaLR 0 375 1 1151 224 59 72 chr13 68515686 68515829 -33357340 + MER21B LTR ERV1 608 751 -112 26 50 0 0 chr13 68516209 68516249 -33356920 + AT_rich Low_complexity Low_complexity 1 40 0 256 250 0 18 chr13 68516515 68516571 -33356598 - MLT1D LTR MaLR -191 314 260 5780 78 2 3 chr13 68516571 68517932 -33355237 - L1PA7 LINE L1 0 6154 4760 4349 107 3 3 chr13 68517932 68518570 -33354599 + L1PA7 LINE L1 4092 4729 -1417 325 265 73 44 chr13 68518746 68518882 -33354287 - MLT1D LTR MaLR -362 143 4 28 0 0 0 chr13 68519416 68519444 -33353725 + AT_rich Low_complexity Low_complexity 1 28 0 195 313 0 30 chr13 68519816 68519883 -33353286 + L2 LINE L2 3246 3310 -3 401 264 92 54 chr13 68520990 68521196 -33351973 - LTR40b LTR ERVL -5 457 267 31 26 0 0 chr13 68521386 68521424 -33351745 + AT_rich Low_complexity Low_complexity 1 38 0 233 374 39 16 chr13 68523106 68523288 -33349881 + MIR SINE MIR 64 249 -13 22 0 0 0 chr13 68523481 68523503 -33349666 + AT_rich Low_complexity Low_complexity 1 22 0 229 261 72 85 chr13 68524504 68524657 -33348512 + MLT1H1-int LTR MaLR 1107 1257 -114 822 262 96 71 chr13 68524753 68525192 -33347977 + MLT1H1 LTR MaLR 1 450 -105 1456 227 42 28 chr13 68525641 68526069 -33347100 - MLT1C LTR MaLR 0 467 34 1461 166 123 26 chr13 68526080 68526430 -33346739 - MLT1-int LTR MaLR -984 387 4 459 0 0 0 chr13 68526460 68526511 -33346658 + (TG)n Simple_repeat Simple_repeat 2 52 0 980 211 54 9 chr13 68526610 68526833 -33346336 + MLT2C1 LTR ERVL 124 356 -41 2016 116 26 10 chr13 68526867 68527169 -33346000 - AluSc SINE Alu -2 307 1 750 138 0 0 chr13 68527169 68527285 -33345884 - MLT2C2 LTR ERVL -344 120 5 25 0 0 0 chr13 68528325 68528350 -33344819 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr13 68528441 68528472 -33344697 + AT_rich Low_complexity Low_complexity 1 31 0 498 290 42 37 chr13 68530809 68531023 -33342146 - MER54A LTR ERVL -311 590 376 182 372 83 8 chr13 68533109 68533230 -33339939 + L3 LINE CR1 1428 1557 -20 332 333 84 21 chr13 68534284 68534521 -33338648 - MIR SINE MIR 0 262 11 890 224 228 11 chr13 68534591 68534863 -33338306 - L1MC3 LINE L1 -934 6851 6521 3667 245 39 11 chr13 68534869 68536145 -33337024 - L1MC3 LINE L1 -754 5392 4979 1804 252 45 13 chr13 68536342 68537361 -33335808 - L1MC/D LINE L1 -754 5810 5155 734 277 22 89 chr13 68537347 68537480 -33335689 - L1MC/D LINE L1 -1775 4789 4649 * 489 17 0 0 chr13 68537480 68537538 -33335631 + (GA)n Simple_repeat Simple_repeat 2 59 0 734 277 22 89 chr13 68537538 68537765 -33335404 - L1MC/D LINE L1 -1915 4649 4453 514 332 16 21 chr13 68537826 68538016 -33335153 - MLT1A2 LTR MaLR -185 189 1 3477 84 12 12 chr13 68538039 68538539 -33334630 - L1PA13 LINE L1 0 6163 5664 1238 270 97 67 chr13 68538555 68540309 -33332860 - L1MCa LINE L1 -3393 3171 1156 * 3617 176 15 86 chr13 68540289 68541207 -33331962 - L1MA10 LINE L1 -2 6332 5480 2221 242 33 13 chr13 68541197 68541796 -33331373 - L1MCa LINE L1 -4898 1147 537 * 897 296 49 62 chr13 68541798 68542251 -33330918 - L1MCa LINE L1 -5598 447 1 208 150 0 25 chr13 68545310 68545350 -33327819 + (CA)n Simple_repeat Simple_repeat 2 40 0 192 388 61 7 chr13 68545397 68545544 -33327625 - MIR SINE MIR -58 204 50 303 350 78 6 chr13 68545744 68545924 -33327245 + MIR SINE MIR 65 257 -5 11996 228 38 18 chr13 68545931 68545961 -33327208 - L1M3 LINE L1 -697 6907 6879 3363 160 82 3 chr13 68545961 68546591 -33326578 - L1PA16 LINE L1 -11 6155 5476 1093 51 0 0 chr13 68546591 68546724 -33326445 - L1PA5 LINE L1 -1 6153 6016 11996 228 38 18 chr13 68546724 68549774 -33323395 - L1M3 LINE L1 -725 6879 3740 2316 94 0 7 chr13 68549774 68550082 -33323087 - AluY SINE Alu -3 308 3 11996 228 38 18 chr13 68550082 68551639 -33321530 - L1M3 LINE L1 -3864 3740 2215 273 330 21 0 chr13 68551855 68551952 -33321217 - L1PA12 LINE L1 -5398 2183 2085 795 356 42 28 chr13 68552098 68552676 -33320493 - L1PA12 LINE L1 -6200 1374 789 24 77 0 0 chr13 68552690 68552742 -33320427 + AT_rich Low_complexity Low_complexity 1 52 0 2626 41 0 0 chr13 68553062 68553381 -33319788 - L1PA2 LINE L1 -1059 5087 4769 7741 14 5 0 chr13 68553381 68554507 -33318662 + L1PA2 LINE L1 5088 6217 0 197 239 113 28 chr13 68554586 68554657 -33318512 - MIR3 SINE MIR -24 184 108 191 313 94 50 chr13 68554671 68554831 -33318338 - L2 LINE L2 0 3313 3147 1181 176 12 16 chr13 68554998 68555248 -33317921 - L1MA8 LINE L1 -4 6287 6039 1215 298 59 43 chr13 68555509 68556190 -33316979 + L1M4 LINE L1 14 705 -5837 234 0 0 0 chr13 68556389 68556415 -33316754 + (TG)n Simple_repeat Simple_repeat 2 27 0 1858 187 87 22 chr13 68557783 68558185 -33314984 - MSTA LTR MaLR 0 428 1 577 286 112 87 chr13 68558666 68559159 -33314010 + MLT1D LTR MaLR 1 505 0 211 325 193 24 chr13 68559169 68559381 -33313788 - MIR SINE MIR -14 248 1 255 189 0 0 chr13 68560129 68560182 -33312987 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr13 68560364 68560385 -33312784 + AT_rich Low_complexity Low_complexity 1 21 0 218 250 18 0 chr13 68561476 68561532 -33311637 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 24 77 0 0 chr13 68562316 68562368 -33310801 + AT_rich Low_complexity Low_complexity 1 52 0 344 222 42 0 chr13 68562534 68562606 -33310563 - MER3 DNA MER1_type 0 209 135 522 181 66 44 chr13 68563153 68563335 -33309834 - MER53 DNA DNA 0 189 4 226 209 33 44 chr13 68564314 68564405 -33308764 - L1MC4 LINE L1 -1339 6703 6614 268 159 18 26 chr13 68564409 68564522 -33308647 + (TA)n Simple_repeat Simple_repeat 1 112 0 360 281 112 56 chr13 68564709 68564741 -33308428 - MIR SINE MIR -71 191 162 369 0 0 0 chr13 68564741 68564782 -33308387 + (TTA)n Simple_repeat Simple_repeat 1 41 0 360 281 112 56 chr13 68564782 68564927 -33308242 - MIR SINE MIR -100 162 4 272 403 67 0 chr13 68565485 68565634 -33307535 + L2 LINE L2 2904 3062 -210 293 281 132 58 chr13 68566481 68566776 -33306393 + L1M4 LINE L1 959 1275 -5359 313 385 47 5 chr13 68566903 68567116 -33306053 + L1M4 LINE L1 1413 1634 -5000 498 46 0 0 chr13 68567237 68567302 -33305867 + (TG)n Simple_repeat Simple_repeat 2 66 0 22 80 0 0 chr13 68567604 68567654 -33305515 + AT_rich Low_complexity Low_complexity 1 50 0 5312 249 24 21 chr13 68567704 68568961 -33304208 + L1PA15-16 LINE L1 1 1260 -5589 3786 247 37 116 chr13 68569074 68570571 -33302598 + L1PB4 LINE L1 734 1921 -4928 207 0 0 0 chr13 68570571 68570594 -33302575 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 3786 247 37 116 chr13 68570594 68571069 -33302100 + L1PB4 LINE L1 1921 2432 -4417 8785 216 34 48 chr13 68571102 68571366 -33301803 + L1PB4 LINE L1 3267 3533 -3326 2885 9 0 0 chr13 68571366 68571683 -33301486 + AluYb8 SINE Alu 1 317 -1 8785 216 34 48 chr13 68571683 68572512 -33300657 + L1PB4 LINE L1 3533 4372 -2487 343 109 40 19 chr13 68572512 68572587 -33300582 + MSTA LTR MaLR 1 83 -292 8785 216 34 48 chr13 68572587 68572620 -33300549 + L1PB4 LINE L1 4372 4404 -2455 284 178 3 0 chr13 68572620 68572675 -33300494 + MSTA LTR MaLR 300 428 0 8785 216 34 48 chr13 68572675 68574773 -33298396 + L1PB4 LINE L1 4404 6568 -291 314 156 0 39 chr13 68574761 68574850 -33298319 + L1PB4 LINE L1 6772 6853 -16 * 198 0 0 0 chr13 68576457 68576479 -33296690 + (T)n Simple_repeat Simple_repeat 1 22 0 194 128 26 0 chr13 68576567 68576606 -33296563 + (TAA)n Simple_repeat Simple_repeat 1 40 0 315 329 76 0 chr13 68576611 68576769 -33296400 - MIR SINE MIR -56 206 37 198 301 0 97 chr13 68577396 68577499 -33295670 - MER5B DNA MER1_type -84 94 2 1091 185 24 31 chr13 68577873 68578124 -33295045 - L1MD3 LINE L1 -3 7992 6081 551 207 9 9 chr13 68578126 68578242 -33294927 - L1MC1 LINE L1 -214 6119 6004 1363 147 13 13 chr13 68578244 68578469 -33294700 + THE1C LTR MaLR 1 225 -150 2109 118 69 9 chr13 68578502 68578850 -33294319 + LTR4 LTR ERV1 221 589 -7 896 173 7 0 chr13 68578856 68579006 -33294163 + THE1C LTR MaLR 225 375 0 5774 146 49 4 chr13 68579006 68579940 -33293229 + THE1C-int LTR MaLR 1 976 -604 1470 212 7 17 chr13 68579939 68580241 -33292928 - L1MCa LINE L1 -6120 306 8 * 23 0 0 0 chr13 68580513 68580536 -33292633 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 68580671 68580701 -33292468 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 68580857 68580878 -33292291 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr13 68581000 68581042 -33292127 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 36 0 0 chr13 68581107 68581135 -33292034 + AT_rich Low_complexity Low_complexity 1 28 0 207 89 54 36 chr13 68581306 68581362 -33291807 + T-rich Low_complexity Low_complexity 1 57 0 3186 132 11 8 chr13 68581362 68581886 -33291283 - L1MA1 LINE L1 0 6302 5777 4427 219 30 20 chr13 68581914 68582907 -33290262 - L1M1 LINE L1 -6540 1025 23 23 0 0 0 chr13 68583217 68583240 -33289929 + AT_rich Low_complexity Low_complexity 1 23 0 195 227 0 0 chr13 68583497 68583563 -33289606 + (TA)n Simple_repeat Simple_repeat 2 67 0 203 133 0 0 chr13 68584652 68584682 -33288487 + (CA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr13 68585357 68585381 -33287788 + AT_rich Low_complexity Low_complexity 1 24 0 1228 245 29 34 chr13 68586138 68586521 -33286648 - MER39 LTR ERV1 -66 641 261 21 0 0 0 chr13 68587624 68587645 -33285524 + AT_rich Low_complexity Low_complexity 1 21 0 2897 136 37 160 chr13 68588584 68589395 -33283774 - MER50 LTR ERV1 -23 711 1 23 0 0 0 chr13 68589513 68589536 -33283633 + AT_rich Low_complexity Low_complexity 1 23 0 224 338 0 0 chr13 68590046 68590120 -33283049 + GA-rich Low_complexity Low_complexity 2 75 0 2034 122 10 0 chr13 68590640 68590934 -33282235 - AluSq SINE Alu -16 297 1 28 48 0 0 chr13 68591416 68591458 -33281711 + AT_rich Low_complexity Low_complexity 1 42 0 10368 182 33 24 chr13 68592200 68593470 -33279699 - Tigger2 DNA MER2_type -5 2713 1456 180 0 0 0 chr13 68593470 68593490 -33279679 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 10368 182 33 24 chr13 68593490 68594151 -33279018 - Tigger2 DNA MER2_type -1262 1456 802 6508 65 42 0 chr13 68594151 68594808 -33278361 - L1PA7 LINE L1 -5 6149 5470 2030 113 3 33 chr13 68594808 68595110 -33278059 - AluSg SINE Alu -13 297 5 6508 65 42 0 chr13 68595110 68595438 -33277731 - L1PA7 LINE L1 -684 5470 5157 10368 182 33 24 chr13 68595438 68596201 -33276968 - Tigger2 DNA MER2_type -1916 802 1 186 319 62 50 chr13 68596645 68596805 -33276364 - MER5A DNA MER1_type -20 169 8 379 274 103 27 chr13 68596883 68597029 -33276140 + MIR SINE MIR 106 262 0 743 172 0 16 chr13 68597127 68597255 -33275914 + FLAM_A SINE Alu 11 136 -6 233 203 47 0 chr13 68597637 68597701 -33275468 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 24 32 0 0 chr13 68597960 68597991 -33275178 + AT_rich Low_complexity Low_complexity 1 31 0 3374 70 146 149 chr13 68599432 68600122 -33273047 + LTR12 LTR ERV1 1 688 0 272 143 18 0 chr13 68600548 68600604 -33272565 + (TG)n Simple_repeat Simple_repeat 2 58 0 513 287 58 15 chr13 68600711 68601090 -33272079 - MER110 LTR ERV1 -20 471 22 254 279 0 0 chr13 68601070 68601131 -33272038 - MER110 LTR ERV1 -409 82 22 * 1138 284 67 34 chr13 68601522 68601970 -33271199 + MLT1F1 LTR MaLR 89 551 -16 439 335 98 5 chr13 68602314 68602741 -33270428 - L1ME3A LINE L1 -213 5957 5491 488 366 98 8 chr13 68602895 68603261 -33269908 - MLT1G1 LTR MaLR -188 407 9 204 40 0 0 chr13 68603272 68603297 -33269872 + (TTG)n Simple_repeat Simple_repeat 3 27 0 892 217 0 0 chr13 68603749 68603910 -33269259 + FRAM SINE Alu 2 162 -4 586 279 48 14 chr13 68604190 68604398 -33268771 + L1ME3A LINE L1 5510 5724 -446 3079 233 59 40 chr13 68604409 68605238 -33267931 - MER21B LTR ERV1 0 863 19 329 244 13 13 chr13 68605336 68605414 -33267755 - MER21B LTR ERV1 -773 90 13 486 297 122 0 chr13 68605428 68605657 -33267512 + L1ME3A LINE L1 5721 5977 -193 1088 230 24 56 chr13 68605684 68605978 -33267191 + MLT1A1 LTR MaLR 6 289 -76 2240 120 0 0 chr13 68605978 68606277 -33266892 - AluSg SINE Alu -11 299 1 1088 230 24 56 chr13 68606277 68606321 -33266848 + MLT1A1 LTR MaLR 289 333 -32 2918 200 32 12 chr13 68606464 68606615 -33266554 + ERVL-B3 LTR ERVL 3323 3470 -2294 180 0 0 0 chr13 68606615 68606635 -33266534 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2918 200 32 12 chr13 68606635 68607445 -33265724 + ERVL-B3 LTR ERVL 3470 4379 -1385 1903 179 62 34 chr13 68607446 68607975 -33265194 + MLT2A2 LTR ERVL 2 554 0 5445 194 25 34 chr13 68607975 68608678 -33264491 + ERVL-B3 LTR ERVL 4375 5064 -700 1830 181 19 68 chr13 68608678 68609093 -33264076 + MSTD LTR MaLR 2 396 0 5445 194 25 34 chr13 68609093 68609553 -33263616 + ERVL-B3 LTR ERVL 5064 5527 -237 6389 168 32 5 chr13 68609566 68609827 -33263342 - Tigger3b DNA MER2_type -1809 1219 966 3168 156 51 17 chr13 68609827 68610417 -33262752 - MER4B LTR ERV1 0 610 1 6389 168 32 5 chr13 68610417 68611000 -33262169 - Tigger3b DNA MER2_type -2062 966 331 2356 149 15 0 chr13 68611000 68611397 -33261772 - MER57A LTR ERV1 0 403 1 6389 168 32 5 chr13 68611397 68611738 -33261431 - Tigger3b DNA MER2_type -2697 331 1 22 35 0 0 chr13 68611802 68611831 -33261338 + AT_rich Low_complexity Low_complexity 1 29 0 32 67 0 0 chr13 68611998 68612058 -33261111 + AT_rich Low_complexity Low_complexity 1 60 0 3484 185 18 17 chr13 68612201 68612396 -33260773 - MER67C LTR ERV1 0 710 517 861 268 44 101 chr13 68612396 68612983 -33260186 + MLT2B3 LTR ERVL 1 554 0 3484 185 18 17 chr13 68612983 68613496 -33259673 - MER67C LTR ERV1 -193 517 1 306 87 0 0 chr13 68614194 68614240 -33258929 + (TAGTG)n Simple_repeat Simple_repeat 5 50 0 2077 164 136 24 chr13 68614401 68614936 -33258233 - LTR49 LTR ERV1 0 595 1 284 122 0 0 chr13 68615152 68615193 -33257976 + MER101B LTR ERV1 1 41 -529 1333 170 180 7 chr13 68615197 68615480 -33257689 - MSTA LTR MaLR 0 428 97 2638 194 20 4 chr13 68615482 68615978 -33257191 + L1P3 LINE L1 5 508 -5367 19610 186 14 17 chr13 68615978 68619217 -33253952 + L1P3 LINE L1 771 4014 -2447 432 0 0 0 chr13 68619217 68619265 -33253904 + (CA)n Simple_repeat Simple_repeat 2 49 0 19610 186 14 17 chr13 68619265 68620195 -33252974 + L1P3 LINE L1 4014 4945 -1516 5693 211 16 7 chr13 68620403 68621693 -33251476 - L1 LINE L1 -1071 5075 3775 24 0 0 0 chr13 68621793 68621817 -33251352 + AT_rich Low_complexity Low_complexity 1 24 0 2234 55 44 0 chr13 68621817 68622089 -33251080 - AluY SINE Alu -27 284 1 25 0 0 0 chr13 68623085 68623110 -33250059 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 68624522 68624550 -33248619 + AT_rich Low_complexity Low_complexity 1 28 0 184 292 186 9 chr13 68624906 68625019 -33248150 - MIR3 SINE MIR -9 199 67 373 204 19 10 chr13 68625452 68625555 -33247614 - LTR37A LTR ERV1 -34 392 289 400 289 35 0 chr13 68625777 68625891 -33247278 - LTR40b LTR ERVL -222 240 123 2949 156 25 27 chr13 68626000 68626525 -33246644 + MER1A DNA MER1_type 4 527 0 367 264 50 44 chr13 68629976 68630135 -33243034 + MIR SINE MIR 103 262 0 283 387 116 11 chr13 68630135 68630507 -33242662 + L2 LINE L2 2104 2514 -800 225 380 8 16 chr13 68630868 68630997 -33242172 + MLT1G LTR MaLR 35 162 -428 324 261 9 9 chr13 68631016 68631131 -33242038 + CT-rich Low_complexity Low_complexity 2 116 0 309 232 172 93 chr13 68631135 68631286 -33241883 + MLT1G LTR MaLR 224 386 -209 314 200 100 0 chr13 68631294 68631384 -33241785 + MLT1G LTR MaLR 492 590 0 282 357 14 21 chr13 68631650 68631790 -33241379 + L2 LINE L2 3175 3313 0 21 36 0 0 chr13 68631808 68631836 -33241333 + AT_rich Low_complexity Low_complexity 1 28 0 3833 192 94 47 chr13 68632285 68633160 -33240009 - LTR28 LTR ERV1 -104 916 1 422 231 35 28 chr13 68633832 68633975 -33239194 + L1MA9 LINE L1 6073 6216 -96 596 167 44 26 chr13 68633975 68634089 -33239080 - AluJo SINE Alu -14 298 183 749 208 0 0 chr13 68634089 68634219 -33238950 - AluJo SINE Alu -170 132 3 246 261 0 0 chr13 68634221 68634290 -33238879 + L1MA9 LINE L1 6205 6273 -39 364 82 0 0 chr13 68634586 68634635 -33238534 + MADE1 DNA Mariner 5 53 -27 1551 142 258 13 chr13 68634935 68635253 -33237916 + THE1B-int LTR MaLR 1184 1579 -1 1117 167 0 0 chr13 68635256 68635424 -33237745 + THE1B LTR MaLR 3 170 -194 1160 145 23 37 chr13 68635658 68635872 -33237297 + THE1B LTR MaLR 154 364 0 1632 268 26 20 chr13 68635873 68636325 -33236844 + LTR26 LTR ERV1 149 603 0 323 229 90 49 chr13 68636343 68636487 -33236682 + MER101B LTR ERV1 147 296 -274 3724 138 50 0 chr13 68637461 68638083 -33235086 + MER39B LTR ERV1 1 653 0 228 257 43 0 chr13 68639182 68639252 -33233917 + MSTB2 LTR MaLR 385 457 0 805 246 118 28 chr13 68640688 68640976 -33232193 + MER2 DNA MER2_type 9 322 -23 273 324 52 12 chr13 68641020 68641193 -33231976 + L1M4 LINE L1 2727 2906 -3240 201 294 0 22 chr13 68641208 68641300 -33231869 + A-rich Low_complexity Low_complexity 3 92 0 21 0 0 0 chr13 68641396 68641417 -33231752 + AT_rich Low_complexity Low_complexity 1 21 0 962 233 45 16 chr13 68642547 68642956 -33230213 + MER65C LTR ERV1 1 461 0 24 0 0 0 chr13 68644438 68644462 -33228707 + AT_rich Low_complexity Low_complexity 1 24 0 2320 71 0 3 chr13 68644656 68644951 -33228218 - AluY SINE Alu -17 294 1 303 294 69 0 chr13 68646579 68646681 -33226488 - HERV16 LTR ERVL -3060 1936 1828 207 0 0 0 chr13 68646775 68646798 -33226371 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 398 412 13 16 chr13 68646825 68647133 -33226036 - HERV16 LTR ERVL -3420 1576 1270 758 352 41 16 chr13 68647289 68647778 -33225391 - HERV16 LTR ERVL -4472 524 24 630 351 71 12 chr13 68647808 68648130 -33225039 - LTR16A LTR ERVL -13 437 97 244 272 88 18 chr13 68648269 68648383 -33224786 + L1MC/D LINE L1 4582 4703 -1443 477 341 45 58 chr13 68648398 68648885 -33224284 + L1MC/D LINE L1 4693 5173 -973 401 244 61 16 chr13 68648886 68649048 -33224121 - MER4A LTR ERV1 -9 588 295 1926 181 45 45 chr13 68649048 68649222 -33223947 - MSTA LTR MaLR 0 428 255 1352 207 73 25 chr13 68649222 68649580 -33223589 + THE1C LTR MaLR 1 375 0 8795 150 17 35 chr13 68649582 68651190 -33221979 + THE1C-int LTR MaLR 3 1580 0 1584 150 69 39 chr13 68651192 68651552 -33221617 + THE1C LTR MaLR 5 375 0 1926 181 45 45 chr13 68651552 68651797 -33221372 - MSTA LTR MaLR -174 254 3 8278 198 31 1 chr13 68651803 68653401 -33219768 - MSTA-int LTR MaLR -4 1647 2 2281 185 41 0 chr13 68653402 68653813 -33219356 - MSTA LTR MaLR 0 428 1 1670 157 58 53 chr13 68653852 68654315 -33218854 - MER4A LTR ERV1 -239 425 1 314 270 52 17 chr13 68654524 68654639 -33218530 + L1ME3A LINE L1 6044 6162 -8 1513 160 98 25 chr13 68654827 68655437 -33217732 + L1PBa LINE L1 807 1606 -5257 497 255 56 56 chr13 68655441 68655541 -33217628 + L1ME2 LINE L1 5638 5737 -427 1921 149 7 13 chr13 68655541 68655850 -33217319 + AluSx SINE Alu 1 307 -5 497 255 56 56 chr13 68655850 68656016 -33217153 + L1ME2 LINE L1 5736 5904 -260 23 0 0 0 chr13 68656044 68656067 -33217102 + AT_rich Low_complexity Low_complexity 1 23 0 330 291 51 29 chr13 68656321 68656496 -33216673 + L1MC/D LINE L1 5348 5526 -2282 666 164 9 159 chr13 68656501 68656727 -33216442 + L1P LINE L1 4874 5065 -1081 26 30 0 0 chr13 68656820 68656853 -33216316 + AT_rich Low_complexity Low_complexity 1 33 0 462 30 0 0 chr13 68656914 68656981 -33216188 + AluSp/q SINE Alu 240 306 -7 225 329 0 0 chr13 68657056 68657138 -33216031 + L1M4 LINE L1 5190 5271 -875 23 0 0 0 chr13 68657163 68657186 -33215983 + AT_rich Low_complexity Low_complexity 1 23 0 36 40 0 0 chr13 68657482 68657532 -33215637 + AT_rich Low_complexity Low_complexity 1 50 0 306 135 58 10 chr13 68657573 68657677 -33215492 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 333 353 98 10 chr13 68658197 68658401 -33214768 - MIR SINE MIR 0 262 41 1762 105 71 14 chr13 68661591 68661886 -33211283 + AluSx SINE Alu 1 312 0 189 74 0 0 chr13 68662370 68662397 -33210772 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 720 193 41 7 chr13 68662419 68662564 -33210605 - FRAM SINE Alu -27 149 1 22 0 0 0 chr13 68662912 68662934 -33210235 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr13 68662995 68663056 -33210113 + AT_rich Low_complexity Low_complexity 1 61 0 875 294 37 46 chr13 68663242 68663887 -33209282 - L1ME2 LINE L1 -172 5926 5291 1164 142 5 28 chr13 68663966 68664177 -33208992 - L1MA5A LINE L1 -4 6293 6088 836 175 62 76 chr13 68664182 68664393 -33208776 + L1M2 LINE L1 5421 5628 -669 1376 271 93 16 chr13 68664491 68665230 -33207939 - L1ME2 LINE L1 -817 5263 4468 368 217 131 63 chr13 68665299 68665520 -33207649 - L1ME2 LINE L1 -1711 4369 4134 1573 278 119 34 chr13 68665520 68665625 -33207544 - L1ME2 LINE L1 -2394 3686 3591 721 107 0 27 chr13 68665625 68665733 -33207436 + L1PA8A LINE L1 6021 6129 -2 1573 278 119 34 chr13 68665733 68667043 -33206126 - L1ME2 LINE L1 -2489 3591 2150 229 306 83 9 chr13 68667138 68667246 -33205923 - L1ME2 LINE L1 -5942 128 13 27 73 0 0 chr13 68667381 68667436 -33205733 + AT_rich Low_complexity Low_complexity 1 55 0 1284 216 122 12 chr13 68667702 68668105 -33205064 - LTR2 LTR ERV1 0 449 3 1838 240 44 42 chr13 68668121 68668734 -33204435 + L1MB7 LINE L1 5558 6171 -13 1231 221 112 45 chr13 68668865 68669095 -33204074 - LTR2 LTR ERV1 0 449 236 210 71 0 0 chr13 68669095 68669123 -33204046 + (CAGAA)n Simple_repeat Simple_repeat 1 28 0 1231 221 112 45 chr13 68669123 68669313 -33203856 - LTR2 LTR ERV1 -213 236 1 425 240 0 29 chr13 68670517 68670621 -33202548 - MER58B DNA MER1_type -2 339 239 886 260 61 73 chr13 68670621 68671182 -33201987 - MER39 LTR ERV1 0 707 5 21 0 0 0 chr13 68671899 68671920 -33201249 + AT_rich Low_complexity Low_complexity 1 21 0 304 216 11 23 chr13 68672389 68672477 -33200692 - Charlie5 DNA MER1_type 0 2623 2537 595 127 79 0 chr13 68672528 68672654 -33200515 + Charlie5 DNA MER1_type 2353 2488 -124 312 290 0 0 chr13 68672678 68672747 -33200422 - Charlie5 DNA MER1_type -2543 69 1 1401 189 21 25 chr13 68673029 68673314 -33199855 + MLT2D LTR ERVL 1 284 -130 305 128 21 0 chr13 68673328 68673375 -33199794 + MLT2D LTR ERVL 417 464 0 1298 202 46 139 chr13 68673961 68674170 -33198999 - MER67D LTR ERV1 0 514 287 2046 122 70 12 chr13 68674170 68674514 -33198655 + THE1B LTR MaLR 1 364 0 1298 202 46 139 chr13 68674514 68674849 -33198320 - MER67D LTR ERV1 -227 287 21 2325 316 68 25 chr13 68674934 68676062 -33197107 - HERVL LTR ERVL -990 4774 3598 795 306 17 9 chr13 68676220 68676522 -33196647 - HERVL LTR ERVL -2369 3395 3044 248 248 54 108 chr13 68676741 68676870 -33196299 - LTR35 LTR ERV1 0 618 497 200 114 68 0 chr13 68676870 68676914 -33196255 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 311 242 11 21 chr13 68677027 68677122 -33196047 - LTR58 LTR ERV1 -236 443 350 559 292 62 9 chr13 68677395 68677621 -33195548 - HERVL LTR ERVL -2932 2832 2595 207 0 0 0 chr13 68677653 68677676 -33195493 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 546 207 37 2 chr13 68678319 68678561 -33194608 + AluJo SINE Alu 3 302 0 299 301 24 0 chr13 68679145 68679228 -33193941 - L2 LINE L2 -4 3268 3184 2090 116 51 28 chr13 68680462 68680816 -33192353 - THE1B LTR MaLR 0 364 3 2908 280 46 25 chr13 68681277 68681721 -33191448 - L1MEc LINE L1 -2742 3473 3040 2079 120 0 32 chr13 68681721 68682030 -33191139 - AluSx SINE Alu -13 299 1 2908 280 46 25 chr13 68682030 68683345 -33189824 - L1MEc LINE L1 -3175 3040 1713 433 243 22 72 chr13 68683345 68683526 -33189643 - MLT1D LTR MaLR -194 311 140 1423 173 23 69 chr13 68684560 68684866 -33188303 + AluJo SINE Alu 1 292 -20 207 0 0 0 chr13 68684880 68684903 -33188266 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 766 177 0 0 chr13 68684925 68685049 -33188120 + FLAM_C SINE Alu 1 124 -19 22 35 0 0 chr13 68685059 68685088 -33188081 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 68686098 68686126 -33187043 + AT_rich Low_complexity Low_complexity 1 28 0 186 287 28 74 chr13 68686822 68686930 -33186239 + MIR SINE MIR 96 198 -64 1606 262 117 36 chr13 68687025 68688693 -33184476 + L1ME2 LINE L1 4359 6154 -10 768 180 99 6 chr13 68688922 68689083 -33184086 + AluSp SINE Alu 138 313 0 902 124 0 32 chr13 68689098 68689283 -33183886 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 205 138 0 0 chr13 68689286 68689315 -33183854 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 810 174 13 8 chr13 68689320 68689561 -33183608 + GA-rich Low_complexity Low_complexity 1 242 0 788 110 0 8 chr13 68689706 68689833 -33183336 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 660 104 0 0 chr13 68690063 68690159 -33183010 + AluSp/q SINE Alu 213 308 -5 314 324 48 14 chr13 68690190 68690335 -33182834 + HERVL LTR ERVL 4152 4301 -1353 679 238 45 26 chr13 68691816 68692081 -33181088 - L1M4 LINE L1 -856 5290 5021 * 1770 254 27 12 chr13 68692078 68692594 -33180575 - L1M4 LINE L1 -2012 4134 3611 193 339 221 4 chr13 68692735 68693015 -33180154 - L2 LINE L2 -1071 2243 1903 192 40 0 0 chr13 68693520 68693545 -33179624 + (CAT)n Simple_repeat Simple_repeat 1 25 0 941 164 57 68 chr13 68693950 68694104 -33179065 - L1MA8 LINE L1 -6 6285 6134 1969 140 7 16 chr13 68694104 68694412 -33178757 - AluSx SINE Alu -3 309 5 941 164 57 68 chr13 68694412 68694520 -33178649 - L1MA8 LINE L1 -157 6134 6026 430 167 0 120 chr13 68694633 68694741 -33178428 - MER82 DNA MER2_type -557 96 2 335 269 8 25 chr13 68694909 68695028 -33178141 + L1MA10 LINE L1 6166 6282 -52 247 284 84 32 chr13 68696252 68696407 -33176762 + MLT1L LTR MaLR 417 579 -36 25 65 0 0 chr13 68697335 68697381 -33175788 + AT_rich Low_complexity Low_complexity 1 46 0 203 175 0 25 chr13 68697807 68697847 -33175322 + (CA)n Simple_repeat Simple_repeat 1 39 0 24 32 0 0 chr13 68698336 68698367 -33174802 + AT_rich Low_complexity Low_complexity 1 31 0 1906 102 0 7 chr13 68698956 68699230 -33173939 - L1PA5 LINE L1 0 6154 5883 5007 50 0 4 chr13 68699230 68700161 -33173008 - L1P2 LINE L1 -491 5663 4735 192 431 26 9 chr13 68700352 68700468 -33172701 + L2 LINE L2 1147 1264 -2050 326 61 20 0 chr13 68700642 68700691 -33172478 + (TA)n Simple_repeat Simple_repeat 1 50 0 246 62 0 0 chr13 68700777 68700809 -33172360 + (CA)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chr13 68701149 68701172 -33171997 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1231 112 0 6 chr13 68701691 68701870 -33171299 - L1MA8 LINE L1 -310 5981 5804 * 1236 208 55 3 chr13 68701866 68702174 -33170995 + L1MA8 LINE L1 5967 6290 -1 569 63 13 0 chr13 68702359 68702438 -33170731 + MADE1 DNA Mariner 1 80 0 23 33 0 0 chr13 68702522 68702552 -33170617 + AT_rich Low_complexity Low_complexity 1 30 0 198 381 0 0 chr13 68702662 68702746 -33170423 - MER5B DNA MER1_type -69 109 26 223 160 0 40 chr13 68704125 68704175 -33168994 + A-rich Low_complexity Low_complexity 1 48 0 1813 153 0 24 chr13 68704665 68704976 -33168193 - AluSx SINE Alu 0 306 3 2126 120 0 3 chr13 68705338 68705639 -33167530 - AluSq SINE Alu -13 300 1 33 0 0 0 chr13 68705965 68705998 -33167171 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr13 68707621 68707653 -33165516 + AT_rich Low_complexity Low_complexity 1 32 0 30 0 0 0 chr13 68707871 68707901 -33165268 + AT_rich Low_complexity Low_complexity 1 30 0 2365 90 0 0 chr13 68708063 68708363 -33164806 + AluSg SINE Alu 1 300 -10 203 95 48 0 chr13 68708460 68708502 -33164667 + (TATG)n Simple_repeat Simple_repeat 2 45 0 1454 6 0 0 chr13 68708602 68708765 -33164404 + AluY SINE Alu 149 311 0 180 341 62 40 chr13 68708765 68708941 -33164228 - L2 LINE L2 -541 2773 2594 22 0 0 0 chr13 68709326 68709348 -33163821 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr13 68709929 68709955 -33163214 + (T)n Simple_repeat Simple_repeat 1 26 0 1568 218 124 12 chr13 68711840 68712243 -33160926 + MER31B LTR ERV1 9 456 -10 569 287 65 34 chr13 68712635 68712987 -33160182 - L1M4 LINE L1 -2974 3172 2810 491 265 1 0 chr13 68713005 68713140 -33160029 + L1MA6 LINE L1 6153 6297 -3 12657 221 34 18 chr13 68713342 68715071 -33158098 - HAL1b LINE L1 0 6165 4465 231 36 0 0 chr13 68715071 68715099 -33158070 + (TG)n Simple_repeat Simple_repeat 1 28 0 12657 221 34 18 chr13 68715099 68715144 -33158025 - HAL1b LINE L1 -1700 4465 4422 1188 244 28 11 chr13 68715144 68715431 -33157738 - AluJb SINE Alu -10 292 1 12657 221 34 18 chr13 68715431 68718123 -33155046 - HAL1b LINE L1 -1743 4422 268 407 158 0 11 chr13 68718138 68718233 -33154936 + (TA)n Simple_repeat Simple_repeat 1 94 0 503 143 0 12 chr13 68718520 68718604 -33154565 - MLT1C LTR MaLR -384 83 1 180 328 90 0 chr13 68721097 68721164 -33152005 - L2 LINE L2 -38 3275 3203 1989 104 0 3 chr13 68721901 68722189 -33150980 + L1PA8 LINE L1 5886 6172 0 2193 55 44 0 chr13 68722854 68723126 -33150043 + AluY SINE Alu 1 284 -27 24 0 0 0 chr13 68723126 68723150 -33150019 + AT_rich Low_complexity Low_complexity 1 24 0 7703 179 26 6 chr13 68723250 68725725 -33147444 + L1MA6 LINE L1 3775 6297 -3 1324 290 41 73 chr13 68726021 68726039 -33147130 - HERV16 LTR ERVL -2129 2867 2850 1190 249 80 23 chr13 68726039 68726437 -33146732 - LTR52 LTR ERVL 0 421 1 1324 290 41 73 chr13 68726437 68726624 -33146545 - HERV16 LTR ERVL -2146 2850 2659 5793 164 54 13 chr13 68726624 68727806 -33145363 + Tigger3b DNA MER2_type 1 1231 0 1324 290 41 73 chr13 68727806 68728320 -33144849 - HERV16 LTR ERVL -2337 2659 2171 237 119 0 0 chr13 68728320 68728362 -33144807 + (TG)n Simple_repeat Simple_repeat 1 42 0 1324 290 41 73 chr13 68728362 68728417 -33144752 - HERV16 LTR ERVL -2825 2171 2116 917 356 45 44 chr13 68728714 68729417 -33143752 - HERV16 LTR ERVL -3398 1598 895 30 0 0 0 chr13 68730295 68730325 -33142844 + AT_rich Low_complexity Low_complexity 1 30 0 36 53 0 0 chr13 68730570 68730627 -33142542 + AT_rich Low_complexity Low_complexity 1 57 0 2040 123 3 3 chr13 68730629 68730929 -33142240 + AluSx SINE Alu 1 300 -12 1814 141 29 4 chr13 68731106 68731382 -33141787 + AluSc SINE Alu 1 283 -26 21 0 0 0 chr13 68731787 68731808 -33141361 + AT_rich Low_complexity Low_complexity 1 21 0 225 332 115 38 chr13 68734688 68734923 -33138246 + L3 LINE CR1 342 594 -983 200 176 39 0 chr13 68735256 68735307 -33137862 + A-rich Low_complexity Low_complexity 2 54 0 2367 54 3 10 chr13 68735351 68735649 -33137520 + AluY SINE Alu 1 296 -15 2389 48 24 3 chr13 68736074 68736369 -33136800 - AluY SINE Alu -10 301 1 2452 60 0 0 chr13 68736948 68737249 -33135920 - AluY SINE Alu -10 301 1 370 173 25 12 chr13 68738404 68738485 -33134684 - LTR40a LTR ERVL -66 453 372 23 54 0 0 chr13 68739447 68739484 -33133685 + AT_rich Low_complexity Low_complexity 1 37 0 298 336 18 26 chr13 68739646 68739759 -33133410 + MIR3 SINE MIR 96 207 -1 2402 67 0 0 chr13 68739819 68740117 -33133052 + AluY SINE Alu 2 299 -12 30 69 0 0 chr13 68740163 68740221 -33132948 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr13 68740967 68741004 -33132165 + AT_rich Low_complexity Low_complexity 1 37 0 2165 114 0 7 chr13 68741507 68741815 -33131354 - AluSg SINE Alu -4 306 1 1995 136 28 25 chr13 68742845 68743206 -33129963 + THE1B LTR MaLR 1 362 -2 356 284 98 53 chr13 68745171 68745396 -33127773 - MIR SINE MIR -10 252 18 300 250 0 12 chr13 68746007 68746091 -33127078 + GA-rich Low_complexity Low_complexity 2 84 0 24 32 0 0 chr13 68747956 68747987 -33125182 + AT_rich Low_complexity Low_complexity 1 31 0 1925 273 95 69 chr13 68748207 68748315 -33124854 + MER52A LTR ERV1 643 747 -1008 2470 56 7 0 chr13 68748315 68748620 -33124549 + AluY SINE Alu 1 307 -4 1925 273 95 69 chr13 68748620 68749592 -33123577 + MER52A LTR ERV1 747 1751 -4 875 272 110 26 chr13 68749849 68750231 -33122938 - MER90 LTR ERV1 -150 464 51 21 36 0 0 chr13 68750291 68750319 -33122850 + AT_rich Low_complexity Low_complexity 1 28 0 218 333 12 12 chr13 68750347 68750431 -33122738 - MIR SINE MIR -150 112 29 237 177 0 101 chr13 68750461 68750540 -33122629 - MER3 DNA MER1_type -4 205 135 4200 224 67 9 chr13 68750542 68751569 -33121600 + L1MC3 LINE L1 6671 7757 -28 435 273 13 13 chr13 68751569 68751723 -33121446 - MER3 DNA MER1_type -41 168 15 3345 151 75 2 chr13 68754423 68755014 -33118155 - MER51A LTR ERV1 0 634 1 4386 226 21 47 chr13 68755165 68756879 -33116290 + L1PA15-16 LINE L1 1996 3678 -3171 525 290 5 31 chr13 68756912 68757105 -33116064 + L1MCb LINE L1 161 348 -5697 2184 92 7 0 chr13 68757133 68757428 -33115741 - MER4E LTR ERV1 0 766 470 2436 225 93 49 chr13 68757443 68757908 -33115261 + L1MC3 LINE L1 6878 7321 -464 2260 166 20 39 chr13 68757908 68758397 -33114772 + L1MA10 LINE L1 5855 6334 0 2436 225 93 49 chr13 68758397 68758793 -33114376 + L1MC3 LINE L1 7321 7777 -8 184 279 44 15 chr13 68759403 68759471 -33113698 + MIR SINE MIR 67 136 -72 21 36 0 0 chr13 68759872 68759900 -33113269 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 68761312 68761337 -33111832 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr13 68762268 68762299 -33110870 + AT_rich Low_complexity Low_complexity 1 31 0 27735 136 12 61 chr13 68762733 68767593 -33105576 + L1PA8 LINE L1 4 4454 -1718 3486 121 2 4 chr13 68767593 68768105 -33105064 - MER9 LTR ERVK 0 511 1 27735 136 12 61 chr13 68768105 68769740 -33103429 + L1PA8 LINE L1 4454 6168 -4 407 90 0 39 chr13 68769939 68770017 -33103152 - L1PA6 LINE L1 0 6154 6080 1302 211 19 48 chr13 68771153 68771466 -33101703 + LTR52-int LTR ERVL 2285 2588 -968 2290 309 31 8 chr13 68771466 68772178 -33100991 - L1M4b LINE L1 -6128 731 4 24 67 0 0 chr13 68772309 68772354 -33100815 + AT_rich Low_complexity Low_complexity 1 45 0 227 147 162 15 chr13 68773045 68773113 -33100056 + LTR48 LTR ERV1 664 741 -46 1558 162 22 11 chr13 68775086 68775358 -33097811 + AluSx SINE Alu 5 279 -33 21 0 0 0 chr13 68775887 68775908 -33097261 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 68776179 68776225 -33096944 + AT_rich Low_complexity Low_complexity 1 46 0 2052 142 3 0 chr13 68776929 68777238 -33095931 - AluSg SINE Alu 0 310 1 340 118 29 15 chr13 68777533 68777601 -33095568 + GA-rich Low_complexity Low_complexity 2 70 0 1235 277 54 18 chr13 68777677 68778121 -33095048 + LTR40b LTR ERVL 3 462 0 540 254 57 17 chr13 68778122 68778299 -33094870 + HERVL40 LTR ERVL 1 184 -5346 501 84 0 0 chr13 68778672 68778743 -33094426 + (TG)n Simple_repeat Simple_repeat 2 72 0 1272 240 48 15 chr13 68779217 68779550 -33093619 + MLT1A1 LTR MaLR 22 365 0 1514 96 209 8 chr13 68779751 68779990 -33093179 - AluSg1 SINE Alu -20 289 3 224 306 0 0 chr13 68780503 68780575 -33092594 + (TA)n Simple_repeat Simple_repeat 2 73 0 2449 94 46 11 chr13 68780577 68780950 -33092219 - MLT2A1 LTR ERVL -58 386 1 18389 85 4 3 chr13 68780950 68784735 -33088434 - HERVL-A1 LTR ERVL 0 5654 1784 231 83 0 0 chr13 68784739 68784775 -33088394 - AluSx SINE Alu -7 294 259 1615 137 12 8 chr13 68784775 68785023 -33088146 + AluSx SINE Alu 3 251 -61 307 264 195 31 chr13 68786379 68786538 -33086631 - MER5A DNA MER1_type -1 188 4 25 65 0 0 chr13 68786887 68786933 -33086236 + AT_rich Low_complexity Low_complexity 1 46 0 29 28 0 0 chr13 68787005 68787041 -33086128 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr13 68787494 68787529 -33085640 + AT_rich Low_complexity Low_complexity 1 35 0 327 78 0 0 chr13 68787758 68787809 -33085360 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1961 120 0 7 chr13 68787823 68788099 -33085070 - AluSx SINE Alu -38 274 1 243 0 0 0 chr13 68789155 68789182 -33083987 + (CA)n Simple_repeat Simple_repeat 2 28 0 342 205 0 0 chr13 68790315 68790393 -33082776 + (TA)n Simple_repeat Simple_repeat 2 79 0 1731 221 26 66 chr13 68790626 68790706 -33082463 + MER67D LTR ERV1 1 83 -431 1472 234 25 30 chr13 68790706 68791073 -33082096 - MLT1A1 LTR MaLR 0 365 1 1731 221 26 66 chr13 68791073 68791522 -33081647 + MER67D LTR ERV1 83 509 -5 198 0 0 0 chr13 68791740 68791762 -33081407 + (A)n Simple_repeat Simple_repeat 1 22 0 1027 183 109 44 chr13 68792054 68792328 -33080841 - L1MA9 LINE L1 0 6312 6021 22 0 0 0 chr13 68793190 68793212 -33079957 + AT_rich Low_complexity Low_complexity 1 22 0 927 294 125 46 chr13 68793787 68794331 -33078838 + MLT1E LTR MaLR 3 589 -4 558 269 51 49 chr13 68794517 68795085 -33078084 - L1ME2 LINE L1 -97 6067 5436 853 264 0 6 chr13 68795392 68795574 -33077595 + MER5A DNA MER1_type 1 181 -8 853 214 43 19 chr13 68797430 68797640 -33075529 + MLT2D LTR ERVL 1 215 -199 340 346 71 37 chr13 68797946 68798215 -33074954 - MLT1I LTR MaLR -20 389 112 232 322 44 11 chr13 68798287 68798377 -33074792 - L2 LINE L2 -799 2515 2423 205 191 24 0 chr13 68798460 68798502 -33074667 + (TG)n Simple_repeat Simple_repeat 2 44 0 456 260 8 8 chr13 68798605 68798728 -33074441 + LTR41 LTR ERVL 17 139 -634 1450 267 9 3 chr13 68799117 68799447 -33073722 + MER74B LTR ERVL 67 398 -224 923 325 42 62 chr13 68799482 68800258 -33072911 + ERVL LTR ERVL 1072 1832 -3932 1076 187 176 56 chr13 68800401 68800775 -33072394 + MSTC LTR MaLR 10 428 0 595 0 27 0 chr13 68800788 68800863 -33072306 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 429 36 0 0 chr13 68801537 68801592 -33071577 + (CA)n Simple_repeat Simple_repeat 2 56 0 3764 319 40 39 chr13 68801610 68802563 -33070606 - ERVL LTR ERVL -362 5402 4444 1870 201 0 29 chr13 68802563 68802937 -33070232 + MLT1A1 LTR MaLR 1 363 -2 3764 319 40 39 chr13 68802937 68803865 -33069304 - ERVL LTR ERVL -1320 4444 3519 29 47 0 0 chr13 68803869 68803912 -33069257 + AT_rich Low_complexity Low_complexity 1 43 0 405 252 50 88 chr13 68804125 68804387 -33068782 + LTR41 LTR ERVL 511 762 -11 180 345 9 35 chr13 68804454 68804567 -33068602 - L2 LINE L2 -21 3292 3183 248 225 0 11 chr13 68804568 68804657 -33068512 + GA-rich Low_complexity Low_complexity 3 90 0 21 0 0 0 chr13 68805209 68805230 -33067939 + AT_rich Low_complexity Low_complexity 1 21 0 267 333 85 18 chr13 68805386 68805551 -33067618 + MER5B DNA MER1_type 2 177 -1 207 133 44 44 chr13 68805551 68805593 -33067576 + MIR3 SINE MIR 157 198 -10 22 70 0 0 chr13 68805830 68805873 -33067296 + AT_rich Low_complexity Low_complexity 1 43 0 509 367 73 48 chr13 68805965 68806447 -33066722 + L2 LINE L2 2625 3123 -190 2216 244 91 20 chr13 68806460 68807143 -33066026 - L1MCa LINE L1 -5673 753 23 270 281 125 23 chr13 68807165 68807293 -33065876 + L2 LINE L2 3170 3310 -3 2171 102 0 0 chr13 68808309 68808603 -33064566 - AluY SINE Alu -17 294 1 1941 124 7 0 chr13 68809618 68809900 -33063269 + AluSx SINE Alu 1 284 -28 180 302 0 0 chr13 68809925 68809978 -33063191 + MIR SINE MIR 137 189 -73 32 75 0 0 chr13 68812416 68812483 -33060686 + AT_rich Low_complexity Low_complexity 1 67 0 898 203 99 26 chr13 68812673 68812999 -33060170 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr13 68814462 68814483 -33058686 + AT_rich Low_complexity Low_complexity 1 21 0 1066 281 60 10 chr13 68814523 68815110 -33058059 + L1M4 LINE L1 2509 3124 -3022 249 184 73 73 chr13 68815114 68815223 -33057946 + MER53 DNA DNA 19 127 -62 235 175 32 16 chr13 68815406 68815469 -33057700 - MER53 DNA DNA -124 65 2 304 294 92 34 chr13 68815479 68815741 -33057428 + L1M4 LINE L1 3181 3457 -2689 * 479 296 98 26 chr13 68815739 68815999 -33057170 + L1ME1 LINE L1 5886 6177 -1 29 47 0 0 chr13 68816516 68816559 -33056610 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr13 68816579 68816616 -33056553 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr13 68817249 68817284 -33055885 + AT_rich Low_complexity Low_complexity 1 35 0 1325 228 38 12 chr13 68817439 68817785 -33055384 + MLT1C LTR MaLR 113 467 0 228 255 9 38 chr13 68818543 68818649 -33054520 + L1MC4 LINE L1 6601 6703 -1339 2258 144 11 3 chr13 68819130 68819491 -33053678 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr13 68819588 68819617 -33053552 + AT_rich Low_complexity Low_complexity 1 29 0 207 333 36 72 chr13 68870191 68870302 -33002867 + L2 LINE L2 3156 3262 -10 1720 265 23 55 chr13 68870311 68870915 -33002254 + L1M3e LINE L1 466 1050 -6439 5414 171 47 7 chr13 68871061 68871500 -33001669 + Tigger3b DNA MER2_type 76 496 -2532 204 40 0 0 chr13 68871500 68871525 -33001644 + (TG)n Simple_repeat Simple_repeat 2 26 0 5414 171 47 7 chr13 68871525 68871565 -33001604 + Tigger3b DNA MER2_type 496 533 -2495 2217 102 0 10 chr13 68871565 68871870 -33001299 + AluSg1 SINE Alu 3 304 -5 5414 171 47 7 chr13 68871870 68872461 -33000708 + Tigger3b DNA MER2_type 533 1190 -41 2460 267 55 61 chr13 68872564 68874000 -32999169 + L1M3e LINE L1 2090 3517 -4048 3244 215 50 16 chr13 68874120 68874541 -32998628 + L1M3e LINE L1 4964 5369 -2196 612 201 22 0 chr13 68874541 68874675 -32998494 + L1PA16 LINE L1 6029 6165 -1 3244 215 50 16 chr13 68874675 68875049 -32998120 + L1M3e LINE L1 5369 5786 -1779 29 60 0 0 chr13 68875481 68875531 -32997638 + AT_rich Low_complexity Low_complexity 1 50 0 842 88 0 0 chr13 68875605 68875718 -32997451 - L1M1 LINE L1 -527 5773 5661 39 22 0 0 chr13 68875926 68875972 -32997197 + AT_rich Low_complexity Low_complexity 1 46 0 29 60 0 0 chr13 68876315 68876365 -32996804 + AT_rich Low_complexity Low_complexity 1 50 0 237 33 0 0 chr13 68876808 68876838 -32996331 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2432 70 0 0 chr13 68876838 68877138 -32996031 - AluY SINE Alu -10 301 2 189 0 0 0 chr13 68877138 68877159 -32996010 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1445 189 7 76 chr13 68877159 68877461 -32995708 - AluJb SINE Alu -30 282 2 286 390 121 11 chr13 68877839 68878029 -32995140 - L2 LINE L2 -540 2774 2564 525 213 22 107 chr13 68879156 68879381 -32993788 - MLT2C1 LTR ERVL -2 395 190 2231 129 0 0 chr13 68879387 68879696 -32993473 - AluY SINE Alu 0 311 3 662 269 19 0 chr13 68879698 68879858 -32993311 - FRAM SINE Alu -13 163 1 824 209 39 0 chr13 68879859 68880041 -32993128 - MLT2C1 LTR ERVL -208 189 1 9508 271 36 19 chr13 68880041 68882730 -32990439 - ERVL LTR ERVL -1 5653 2929 207 0 0 0 chr13 68882746 68882769 -32990400 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr13 68882949 68882979 -32990190 + AT_rich Low_complexity Low_complexity 1 30 0 6013 242 42 66 chr13 68882979 68883230 -32989939 - ERVL LTR ERVL -2783 2981 2725 281 132 206 29 chr13 68883230 68883298 -32989871 + MADE1 DNA Mariner 1 80 0 6013 242 42 66 chr13 68883298 68884731 -32988438 - ERVL LTR ERVL -3039 2725 1271 1942 182 73 3 chr13 68884731 68885115 -32988054 - LTR57 LTR ERVL 0 411 1 6013 242 42 66 chr13 68885115 68885141 -32988028 - ERVL LTR ERVL -4493 1271 1246 1685 125 49 62 chr13 68885307 68885612 -32987557 + AluSx SINE Alu 1 301 -11 23 33 0 0 chr13 68885627 68885657 -32987512 + AT_rich Low_complexity Low_complexity 1 30 0 1147 228 94 33 chr13 68885666 68885995 -32987174 + L1ME1 LINE L1 948 1296 -5563 310 317 102 0 chr13 68886025 68886192 -32986977 + L1ME1 LINE L1 2288 2471 -4488 193 388 116 8 chr13 68886203 68886332 -32986837 + MIR3 SINE MIR 23 165 -43 217 221 11 11 chr13 68886457 68886478 -32986691 + (TA)n Simple_repeat Simple_repeat 1 21 -74 1384 193 15 97 chr13 68886478 68886871 -32986298 + MLT1A1 LTR MaLR 1 361 -4 217 221 11 11 chr13 68886871 68886944 -32986225 + (TA)n Simple_repeat Simple_repeat 20 95 0 21 0 0 0 chr13 68887603 68887624 -32985545 + AT_rich Low_complexity Low_complexity 1 21 0 1094 129 35 0 chr13 68887872 68888043 -32985126 + MER4B LTR ERV1 434 610 0 1855 275 68 21 chr13 68888046 68889367 -32983802 + L1ME1 LINE L1 5394 6772 -205 22 88 0 0 chr13 68891305 68891362 -32981807 + AT_rich Low_complexity Low_complexity 1 57 0 1493 190 49 49 chr13 68892342 68892731 -32980438 - MLT1B LTR MaLR 0 390 2 222 118 0 0 chr13 68894747 68894781 -32978388 + (TA)n Simple_repeat Simple_repeat 2 35 0 771 125 0 0 chr13 68894782 68894910 -32978259 - AluY SINE Alu 0 311 184 1371 250 8 0 chr13 68895010 68895386 -32977783 + L1 LINE L1 3420 3798 -2348 * 5117 192 27 37 chr13 68895384 68896676 -32976493 + L1 LINE L1 4027 5305 -841 4643 178 32 19 chr13 68896670 68897294 -32975875 + L1MA8 LINE L1 5200 5847 -444 * 1550 165 40 0 chr13 68897294 68897566 -32975603 + AluJb SINE Alu 12 294 -18 4643 178 32 19 chr13 68897566 68898012 -32975157 + L1MA8 LINE L1 5847 6285 -6 2023 119 26 10 chr13 68898029 68898341 -32974828 + L1PA13 LINE L1 5847 6163 0 329 331 122 35 chr13 68898519 68898863 -32974306 - L2 LINE L2 -640 2674 2301 554 367 58 14 chr13 68898936 68899214 -32973955 - LTR16C LTR ERVL -2 489 200 24 32 0 0 chr13 68899236 68899267 -32973902 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 68899544 68899573 -32973596 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 68900103 68900132 -32973037 + AT_rich Low_complexity Low_complexity 1 29 0 4218 210 51 39 chr13 68900627 68901225 -32971944 - L1MA10 LINE L1 -3 6331 5741 2486 62 0 0 chr13 68901225 68901532 -32971637 + AluY SINE Alu 3 309 -2 4218 210 51 39 chr13 68901532 68901794 -32971375 - L1MA10 LINE L1 -593 5741 5483 236 29 0 29 chr13 68901794 68901828 -32971341 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 4218 210 51 39 chr13 68901828 68902115 -32971054 - L1MA10 LINE L1 -851 5483 5201 207 0 0 0 chr13 68902115 68902138 -32971031 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4218 210 51 39 chr13 68902138 68902764 -32970405 - L1MA10 LINE L1 -1133 5201 4420 30 0 0 0 chr13 68903041 68903071 -32970098 + AT_rich Low_complexity Low_complexity 1 30 0 1070 283 16 70 chr13 68903208 68903753 -32969416 - LTR40a LTR ERVL 0 519 4 1777 164 40 30 chr13 68903797 68904168 -32969001 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr13 68904246 68904267 -32968902 + AT_rich Low_complexity Low_complexity 1 21 0 386 298 117 5 chr13 68904844 68905032 -32968137 + MIR SINE MIR 9 217 -45 201 397 88 13 chr13 68906910 68907215 -32965954 - L2 LINE L2 -550 2764 2437 22 0 0 0 chr13 68907503 68907525 -32965644 + AT_rich Low_complexity Low_complexity 1 22 0 241 282 30 15 chr13 68907713 68907844 -32965325 + (TCTA)n Simple_repeat Simple_repeat 3 135 0 2742 298 50 5 chr13 68909007 68909819 -32963350 + L1M4b LINE L1 7 855 -6004 254 231 99 11 chr13 68910076 68910167 -32963002 + LTR43 LTR ERV1 189 287 -315 942 209 20 92 chr13 68910246 68910538 -32962631 + LTR56 LTR ERV1 1 271 -174 198 0 0 0 chr13 68910923 68910945 -32962224 + (A)n Simple_repeat Simple_repeat 1 22 0 2590 44 0 19 chr13 68910946 68911263 -32961906 - AluY SINE Alu 0 311 1 180 0 0 0 chr13 68911413 68911433 -32961736 + (A)n Simple_repeat Simple_repeat 1 20 0 37 52 0 0 chr13 68911707 68911765 -32961404 + AT_rich Low_complexity Low_complexity 1 58 0 281 234 21 11 chr13 68913028 68913122 -32960047 + (TA)n Simple_repeat Simple_repeat 2 96 0 223 234 0 0 chr13 68913701 68913748 -32959421 + (CAGAGA)n Simple_repeat Simple_repeat 4 50 0 33 43 0 0 chr13 68913940 68913987 -32959182 + AT_rich Low_complexity Low_complexity 1 47 0 27 49 0 0 chr13 68914009 68914050 -32959119 + AT_rich Low_complexity Low_complexity 1 41 0 427 333 163 5 chr13 68914132 68914544 -32958625 - L1M4 LINE L1 -2970 3176 2700 22 0 0 0 chr13 68916266 68916288 -32956881 + AT_rich Low_complexity Low_complexity 1 22 0 521 356 57 4 chr13 68916677 68916924 -32956245 + MIR SINE MIR 3 262 0 192 40 0 0 chr13 68917763 68917788 -32955381 + (TG)n Simple_repeat Simple_repeat 2 26 0 396 359 55 51 chr13 68918692 68919224 -32953945 + L2 LINE L2 2516 3048 -224 270 224 0 82 chr13 68919348 68919433 -32953736 + L2 LINE L2 3221 3298 -15 759 229 49 6 chr13 68922956 68923139 -32950030 + MER58B DNA MER1_type 136 326 -15 349 291 26 0 chr13 68923671 68923788 -32949381 - MIR SINE MIR 0 262 143 22 88 0 0 chr13 68924049 68924106 -32949063 + AT_rich Low_complexity Low_complexity 1 57 0 1389 149 0 4 chr13 68924165 68924400 -32948769 - L1PA14 LINE L1 0 6161 5928 3591 206 8 6 chr13 68924617 68925641 -32947528 - L1PA14 LINE L1 -601 5565 4540 1387 244 49 35 chr13 68925747 68926152 -32947017 + L1PA13 LINE L1 1347 1757 -5030 1023 93 0 0 chr13 68926151 68926290 -32946879 + THE1C-int LTR MaLR 259 397 -1183 * 5040 143 172 8 chr13 68926320 68927245 -32945924 + THE1C-int LTR MaLR 504 1580 0 2496 118 11 5 chr13 68927245 68927618 -32945551 + THE1C LTR MaLR 1 375 0 430 198 20 10 chr13 68927618 68927719 -32945450 + L1 LINE L1 4867 4968 -1178 2030 121 10 3 chr13 68927731 68928037 -32945132 + THE1C LTR MaLR 68 375 0 6156 216 22 109 chr13 68928058 68929262 -32943907 + L1PA13 LINE L1 1889 3196 -3601 423 0 0 0 chr13 68929262 68929309 -32943860 + (TA)n Simple_repeat Simple_repeat 1 47 0 6156 216 22 109 chr13 68929309 68929967 -32943202 + L1PA13 LINE L1 3196 3909 -2888 1364 180 25 50 chr13 68929967 68930282 -32942887 + AluJo SINE Alu 13 320 0 6156 216 22 109 chr13 68930282 68931758 -32941411 + L1PA13 LINE L1 3909 5197 -1600 591 269 90 64 chr13 68932680 68932867 -32940302 - L1MEd LINE L1 -4872 1247 1066 285 29 0 0 chr13 68932867 68932901 -32940268 + (TA)n Simple_repeat Simple_repeat 2 35 0 591 269 90 64 chr13 68932901 68933357 -32939812 - L1MEd LINE L1 -5053 1066 587 2453 136 3 0 chr13 68933449 68933810 -32939359 - THE1B LTR MaLR -2 362 1 7259 164 26 16 chr13 68934019 68935327 -32937842 - Tigger1 DNA MER2_type 0 2418 1098 1605 163 158 78 chr13 68935327 68935701 -32937468 - MER4A LTR ERV1 0 664 261 552 147 32 0 chr13 68935701 68935796 -32937373 - MER4A LTR ERV1 -566 98 1 4245 213 25 15 chr13 68935796 68936733 -32936436 - Tigger1 DNA MER2_type -1321 1097 152 1147 142 0 0 chr13 68936729 68936905 -32936264 - Tigger1 DNA MER2_type -842 1576 1401 * 814 196 0 26 chr13 68936911 68937064 -32936105 - Tigger1 DNA MER2_type -2269 149 1 2586 109 102 0 chr13 68937440 68937881 -32935288 + LTR19A LTR ERV1 1 486 0 23 33 0 0 chr13 68938251 68938281 -32934888 + AT_rich Low_complexity Low_complexity 1 30 0 388 277 20 0 chr13 68938810 68938911 -32934258 - MER70B LTR ERVL -22 556 454 2451 175 96 39 chr13 68940985 68941603 -32931566 + MER44D DNA MER2_type 53 705 0 4195 190 47 19 chr13 68941707 68941895 -32931274 - L1PA16 LINE L1 -9 6157 5976 1869 166 134 8 chr13 68941895 68942275 -32930894 + MSTA LTR MaLR 1 428 0 8404 171 8 45 chr13 68942277 68943916 -32929253 + MSTA-int LTR MaLR 3 1580 0 1559 198 131 13 chr13 68943916 68944299 -32928870 + MSTA LTR MaLR 1 428 0 4195 190 47 19 chr13 68944299 68945396 -32927773 - L1PA16 LINE L1 -189 5977 4829 1621 194 48 5 chr13 68945391 68945769 -32927400 + L1PA16 LINE L1 4447 4840 -1306 * 290 278 120 31 chr13 68945959 68946150 -32927019 - L2 LINE L2 -70 3243 3036 283 265 22 70 chr13 68946931 68947111 -32926058 - MLT1E2 LTR MaLR -276 229 112 341 291 0 23 chr13 68947151 68947237 -32925932 - MLT1E2 LTR MaLR -542 84 1 2418 191 35 11 chr13 68948230 68948776 -32924393 + L1MA3 LINE L1 5747 6305 0 1472 227 53 63 chr13 68949299 68949824 -32923345 + MLT2B1 LTR ERVL 1 520 0 1207 242 46 3 chr13 68949855 68950140 -32923029 + AluJb SINE Alu 3 299 -3 1223 94 0 6 chr13 68950159 68950224 -32922945 + (GAAA)n Simple_repeat Simple_repeat 1 244 0 1223 94 0 6 chr13 68950224 68950405 -32922764 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 239 204 0 0 chr13 68951397 68951446 -32921723 - MLT2B1 LTR ERVL -7 513 465 819 192 0 6 chr13 68951450 68951606 -32921563 - L1M2 LINE L1 -507 5793 5639 1336 181 29 7 chr13 68951865 68952141 -32921028 - L1MA6 LINE L1 -4 6296 6015 483 150 12 0 chr13 68952141 68952221 -32920948 + L1M2 LINE L1 5565 5645 -655 28 61 0 0 chr13 68952970 68953019 -32920150 + AT_rich Low_complexity Low_complexity 1 49 0 1455 189 36 7 chr13 68953059 68953340 -32919829 + AluSx SINE Alu 1 289 -23 353 164 62 7 chr13 68953340 68953486 -32919683 + (TA)n Simple_repeat Simple_repeat 1 154 0 306 180 101 22 chr13 68953487 68953576 -32919593 - L1MC4 LINE L1 -1339 6703 6608 466 133 0 0 chr13 68954554 68954629 -32918540 + MADE1 DNA Mariner 6 80 0 1704 24 14 0 chr13 68955417 68955627 -32917542 + L1PA3 LINE L1 5940 6152 -3 1533 54 0 105 chr13 68955960 68956199 -32916970 + AluY SINE Alu 70 283 -28 585 0 0 0 chr13 68956199 68956264 -32916905 + (CA)n Simple_repeat Simple_repeat 2 66 0 307 139 0 76 chr13 68956490 68956569 -32916600 + L1MA5 LINE L1 6227 6299 -1 501 256 51 40 chr13 68956652 68956828 -32916341 - MER8 DNA MER2_type -61 178 1 471 286 103 8 chr13 68958629 68958863 -32914306 - MER110 LTR ERV1 -66 425 170 2546 108 3 0 chr13 68959736 68960079 -32913090 + THE1A LTR MaLR 1 344 -11 11137 103 6 7 chr13 68960084 68961659 -32911510 + THE1A-int LTR MaLR 1 1574 -6 2532 99 6 0 chr13 68961664 68962017 -32911152 + THE1A LTR MaLR 1 355 0 449 306 14 57 chr13 68962126 68962335 -32910834 - L2 LINE L2 -5 3308 3109 446 252 45 26 chr13 68962359 68962514 -32910655 + MER106B DNA MER1_type 1 158 -901 21 57 0 0 chr13 68962788 68962823 -32910346 + AT_rich Low_complexity Low_complexity 1 35 0 26 88 0 0 chr13 68963903 68963971 -32909198 + AT_rich Low_complexity Low_complexity 1 68 0 28 48 0 0 chr13 68965859 68965901 -32907268 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr13 68966209 68966233 -32906936 + AT_rich Low_complexity Low_complexity 1 24 0 1994 120 11 0 chr13 68966319 68966593 -32906576 + AluSx SINE Alu 21 297 -15 4347 205 38 15 chr13 68966751 68968097 -32905072 - L1MA8 LINE L1 -4 6287 4905 1676 152 3 50 chr13 68968101 68968398 -32904771 + AluSx SINE Alu 5 287 -25 2366 212 29 0 chr13 68968413 68968960 -32904209 - L1MA8 LINE L1 -1292 4854 4292 39 22 0 0 chr13 68969286 68969332 -32903837 + AT_rich Low_complexity Low_complexity 1 46 0 282 218 18 0 chr13 68969463 68969518 -32903651 - L2 LINE L2 -10 3303 3248 280 22 44 22 chr13 68969520 68969565 -32903604 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 299 179 15 0 chr13 68969606 68969673 -32903496 - L1 LINE L1 -930 5216 5149 23 68 0 0 chr13 68969831 68969875 -32903294 + AT_rich Low_complexity Low_complexity 1 44 0 37 90 0 0 chr13 68970054 68970154 -32903015 + AT_rich Low_complexity Low_complexity 1 100 0 3000 184 54 18 chr13 68971222 68971875 -32901294 - L1MA8 LINE L1 -8 6283 5608 771 257 16 5 chr13 68972033 68972220 -32900949 - MLT1A1 LTR MaLR -1 364 176 549 274 43 6 chr13 68972536 68972700 -32900469 - MER69A DNA AcHobo 0 177 8 182 182 0 0 chr13 68972720 68972753 -32900416 - MER5B DNA MER1_type -123 55 23 203 191 24 0 chr13 68973759 68973801 -32899368 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 905 296 18 5 chr13 68974122 68974345 -32898824 + L1MC/D LINE L1 9 234 -6175 2175 283 77 17 chr13 68974367 68975123 -32898046 + MER21B LTR ERV1 15 815 -48 3422 244 52 15 chr13 68975187 68976030 -32897139 + MER21-int LTR ERV1 3083 3956 -2802 299 275 0 0 chr13 68976031 68976111 -32897058 - MLT1A1 LTR MaLR 0 365 286 625 315 0 0 chr13 68976240 68976405 -32896764 + MER21-int LTR ERV1 1708 1872 -2319 1842 189 109 55 chr13 68976464 68976601 -32896568 + MLT2B2 LTR ERVL 2 130 -385 2315 84 3 3 chr13 68976601 68976912 -32896257 + AluY SINE Alu 1 311 0 1842 189 109 55 chr13 68976912 68977262 -32895907 + MLT2B2 LTR ERVL 130 515 0 332 318 41 18 chr13 68977454 68977624 -32895545 + ERVL LTR ERVL 2552 2725 -3039 1688 232 69 14 chr13 68977665 68978101 -32895068 - MLT1D LTR MaLR -45 460 1 1802 204 69 32 chr13 68978102 68978597 -32894572 + L1MC3 LINE L1 7272 7784 -1 656 252 51 43 chr13 68978640 68978894 -32894275 + L1MC/D LINE L1 3773 4028 -2378 1709 223 87 69 chr13 68978904 68979869 -32893300 + L1MC/D LINE L1 5111 6083 -536 200 125 25 0 chr13 68979941 68979981 -32893188 + A-rich Low_complexity Low_complexity 4 44 0 210 105 0 0 chr13 68980584 68980622 -32892547 + (TC)n Simple_repeat Simple_repeat 1 38 0 319 295 12 36 chr13 68980624 68980790 -32892379 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 * 480 277 0 23 chr13 68980727 68980904 -32892265 + (TA)n Simple_repeat Simple_repeat 2 174 0 313 176 27 0 chr13 68980912 68980986 -32892183 + (TATG)n Simple_repeat Simple_repeat 2 77 0 194 345 138 9 chr13 68981323 68981439 -32891730 + L2 LINE L2 1851 1981 -1333 220 214 0 0 chr13 68981637 68981679 -32891490 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 423 98 0 0 chr13 68981680 68981741 -32891428 + (CA)n Simple_repeat Simple_repeat 2 62 0 303 28 0 0 chr13 68981752 68981788 -32891381 + (GA)n Simple_repeat Simple_repeat 1 36 0 254 387 13 13 chr13 68983784 68983934 -32889235 + LTR67 LTR ERVL 44 193 -364 272 296 96 7 chr13 68984108 68984243 -32888926 + LTR67 LTR ERVL 403 549 -8 28 48 0 0 chr13 68985345 68985387 -32887782 + AT_rich Low_complexity Low_complexity 1 42 0 24 77 0 0 chr13 68985555 68985607 -32887562 + AT_rich Low_complexity Low_complexity 1 52 0 926 246 35 0 chr13 68985694 68985926 -32887243 - AluJo SINE Alu -22 290 51 269 287 52 17 chr13 68985951 68986066 -32887103 - MIR SINE MIR -140 122 4 2668 168 2 0 chr13 68986121 68986579 -32886590 + L1PA16 LINE L1 5708 6166 0 1688 96 0 8 chr13 68987319 68987578 -32885591 + L1PA10 LINE L1 5914 6170 0 2227 92 3 0 chr13 68987896 68988188 -32884981 + AluY SINE Alu 3 295 -16 27 29 0 0 chr13 68988342 68988376 -32884793 + AT_rich Low_complexity Low_complexity 1 34 0 266 278 236 23 chr13 68988874 68989133 -32884036 - L1ME3A LINE L1 -183 5987 5674 216 245 39 20 chr13 68989267 68989369 -32883800 + (TATAA)n Simple_repeat Simple_repeat 1 104 0 537 265 53 65 chr13 68989390 68989623 -32883546 - L1ME3A LINE L1 -743 5403 5169 2286 65 0 0 chr13 68989623 68989899 -32883270 - AluY SINE Alu -17 294 19 537 265 53 65 chr13 68989899 68990048 -32883121 - L1ME3A LINE L1 -977 5169 5052 1763 111 0 85 chr13 68990048 68990354 -32882815 + AluY SINE Alu 16 295 -16 537 265 53 65 chr13 68990354 68990370 -32882799 - L1ME3A LINE L1 -1094 5052 5037 2020 108 0 3 chr13 68990531 68990819 -32882350 + AluSx SINE Alu 6 292 -20 325 328 17 0 chr13 68990821 68990937 -32882232 - L1ME3A LINE L1 -1305 4841 4724 331 326 88 16 chr13 68991213 68991532 -32881637 - L1ME3A LINE L1 -2302 3844 3503 1751 273 68 41 chr13 68991597 68992406 -32880763 - L1ME3A LINE L1 -11 6159 5329 235 210 12 12 chr13 68993303 68993384 -32879785 + (TA)n Simple_repeat Simple_repeat 2 82 0 3160 182 12 21 chr13 68994368 68995049 -32878120 - L1MA4 LINE L1 -6 6294 5620 1956 197 16 14 chr13 68995054 68995820 -32877349 + L1MA4 LINE L1 4855 5619 -686 22 0 0 0 chr13 68996036 68996058 -32877111 + AT_rich Low_complexity Low_complexity 1 22 0 2289 135 62 2 chr13 68996058 68996480 -32876689 - L1MA6 LINE L1 -6 6294 5848 903 120 8 0 chr13 68996665 68996798 -32876371 - L1PA10 LINE L1 -5 6163 6030 180 111 0 0 chr13 68996962 68996989 -32876180 + (TC)n Simple_repeat Simple_repeat 2 28 0 366 266 139 13 chr13 68998583 68998741 -32874428 + MIR SINE MIR 40 217 -45 294 29 0 0 chr13 68999862 68999897 -32873272 + (CA)n Simple_repeat Simple_repeat 2 36 0 2140 106 0 10 chr13 69000839 69001142 -32872027 + AluSg1 SINE Alu 3 302 -7 4089 164 26 45 chr13 69001257 69002111 -32871058 - L1MB3 LINE L1 -7 6176 5339 246 208 0 0 chr13 69002108 69002156 -32871013 + L1M4 LINE L1 5238 5285 -861 * 200 35 35 0 chr13 69002165 69002194 -32870975 + (CAA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 69003659 69003680 -32869489 + AT_rich Low_complexity Low_complexity 1 21 0 1125 214 18 39 chr13 69004044 69004324 -32868845 - AluJo SINE Alu -34 278 5 22 70 0 0 chr13 69005373 69005416 -32867753 + AT_rich Low_complexity Low_complexity 1 43 0 249 167 0 0 chr13 69006738 69006792 -32866377 + (TG)n Simple_repeat Simple_repeat 2 55 0 385 300 27 33 chr13 69006979 69007129 -32866040 - L2 LINE L2 -2355 959 811 574 338 83 56 chr13 69007175 69007607 -32865562 - L2 LINE L2 -2662 652 209 2219 105 3 6 chr13 69008516 69008830 -32864339 - AluSq SINE Alu 0 313 1 887 157 0 46 chr13 69008863 69009016 -32864153 + FRAM SINE Alu 1 145 -31 207 0 0 0 chr13 69009019 69009042 -32864127 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 382 168 30 30 chr13 69009926 69010027 -32863142 + L1MA9 LINE L1 6212 6312 0 681 310 16 66 chr13 69010031 69010396 -32862773 - L1MCb LINE L1 -5698 347 1 384 302 28 6 chr13 69010533 69010711 -32862458 - L1MCa LINE L1 -5883 323 64 2108 97 3 14 chr13 69010792 69011080 -32862089 + AluSx SINE Alu 5 289 -23 290 214 61 38 chr13 69011080 69011103 -32862066 - L1ME LINE L1 -5223 847 826 1695 177 43 25 chr13 69011103 69011471 -32861698 + THE1C LTR MaLR 1 375 0 290 214 61 38 chr13 69011471 69011578 -32861591 - L1ME LINE L1 -5244 826 714 183 42 0 0 chr13 69011619 69011643 -32861526 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 248 348 38 33 chr13 69011643 69011827 -32861342 - L1ME LINE L1 -5441 629 445 311 353 46 71 chr13 69011939 69012222 -32860947 - L1ME LINE L1 -5777 293 18 22 94 0 0 chr13 69012861 69012925 -32860244 + AT_rich Low_complexity Low_complexity 1 64 0 3656 21 0 7 chr13 69012947 69013382 -32859787 - L1PA2 LINE L1 0 6155 5724 2169 106 7 0 chr13 69013549 69013850 -32859319 + AluSp SINE Alu 1 303 -10 22 56 0 0 chr13 69013964 69014000 -32859169 + AT_rich Low_complexity Low_complexity 1 36 0 1771 163 37 26 chr13 69014494 69014815 -32858354 - L1MB1 LINE L1 -1 6167 5840 2110 147 6 15 chr13 69014815 69015155 -32858014 + MER1B DNA MER1_type 1 337 0 1771 163 37 26 chr13 69015155 69015214 -32857955 - L1MB1 LINE L1 -328 5840 5783 1606 216 49 0 chr13 69015320 69015649 -32857520 + MER7A DNA MER2_type 4 346 0 302 256 12 12 chr13 69018035 69018117 -32855052 - L1MB1 LINE L1 -2115 5693 5612 240 208 0 0 chr13 69019744 69019792 -32853377 - MADE1 DNA Mariner -27 53 6 478 229 210 29 chr13 69020323 69020528 -32852641 - L2 LINE L2 -81 3232 2991 5093 185 20 1 chr13 69020547 69021424 -32851745 + MER54A LTR ERVL 8 901 0 2201 82 4 0 chr13 69021427 69021707 -32851462 + AluSx SINE Alu 1 281 -31 187 377 46 29 chr13 69021710 69021885 -32851284 - L2 LINE L2 -340 2974 2797 21 0 0 0 chr13 69021992 69022013 -32851156 + AT_rich Low_complexity Low_complexity 1 21 0 261 223 30 17 chr13 69022975 69023218 -32849951 + (TA)n Simple_repeat Simple_repeat 1 246 0 283 298 44 44 chr13 69023359 69023540 -32849629 + L1MEc LINE L1 35 215 -6181 2081 112 0 0 chr13 69023638 69023924 -32849245 + AluSx SINE Alu 21 306 -6 271 253 38 85 chr13 69024066 69024359 -32848810 + L1M4 LINE L1 3262 3540 -2606 13463 216 79 46 chr13 69024860 69028610 -32844559 + L1P LINE L1 4 3875 -2271 828 31 0 0 chr13 69028622 69028719 -32844450 + L1PA5 LINE L1 6051 6147 -7 382 344 112 17 chr13 69028725 69028966 -32844203 + L1M4 LINE L1 4069 4332 -1814 4533 156 14 15 chr13 69029323 69030137 -32843032 - Tigger1 DNA MER2_type 0 2418 1606 2346 80 0 0 chr13 69030212 69030513 -32842656 - AluY SINE Alu -10 301 1 231 119 0 0 chr13 69031968 69032010 -32841159 - LTR66 LTR ERVL -171 439 398 249 348 30 12 chr13 69032048 69032212 -32840957 + L1M4b LINE L1 687 853 -6712 473 333 53 12 chr13 69032428 69032671 -32840498 + L1M4b LINE L1 751 1003 -6464 1828 304 49 17 chr13 69032803 69033641 -32839528 - L1ME3A LINE L1 0 6170 5306 1149 295 103 14 chr13 69033675 69034323 -32838846 - L1ME3A LINE L1 -945 5201 4496 301 249 176 49 chr13 69034591 69034796 -32838373 - L1ME3A LINE L1 -2229 3917 3687 506 294 91 23 chr13 69034974 69035195 -32837974 - MLT1I LTR MaLR 0 409 174 297 0 0 0 chr13 69035283 69035316 -32837853 + (CA)n Simple_repeat Simple_repeat 1 33 0 299 223 0 43 chr13 69035713 69035807 -32837362 + L1MC4 LINE L1 6624 6713 -1329 217 258 65 43 chr13 69036421 69036514 -32836655 + MIR SINE MIR 156 250 -12 23 33 0 0 chr13 69036819 69036849 -32836320 + AT_rich Low_complexity Low_complexity 1 30 0 195 186 0 0 chr13 69036914 69036957 -32836212 + (TATG)n Simple_repeat Simple_repeat 2 44 0 5530 197 178 35 chr13 69037028 69038563 -32834606 - MER52A LTR ERV1 0 1755 1 24 0 0 0 chr13 69040704 69040728 -32832441 + AT_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr13 69040787 69040837 -32832332 + AT_rich Low_complexity Low_complexity 1 50 0 1656 149 131 24 chr13 69040842 69041171 -32831998 + THE1B LTR MaLR 1 364 0 10675 116 9 7 chr13 69041171 69042745 -32830424 + THE1B-int LTR MaLR 1 1578 -2 1793 151 101 21 chr13 69042747 69043084 -32830085 + THE1B LTR MaLR 1 364 0 365 283 216 35 chr13 69043301 69043739 -32829430 - MLT1G3 LTR MaLR 0 542 1 346 299 82 35 chr13 69044624 69045159 -32828010 + L1ME3A LINE L1 4619 5178 -968 1104 326 81 7 chr13 69045167 69045609 -32827560 - MLT1E LTR MaLR 0 593 119 282 299 161 22 chr13 69045610 69045747 -32827422 - MLT1E LTR MaLR -430 163 8 302 306 61 7 chr13 69045751 69045898 -32827271 + L1ME3A LINE L1 5179 5333 -813 36 82 0 0 chr13 69046014 69046099 -32827070 + AT_rich Low_complexity Low_complexity 1 85 0 561 296 150 15 chr13 69046253 69046726 -32826443 + L1ME3A LINE L1 5631 6167 -3 395 315 55 30 chr13 69047456 69047621 -32825548 - MIR SINE MIR -56 206 38 2049 199 0 43 chr13 69047660 69048128 -32825041 + L1MA6 LINE L1 3759 4206 -1940 1734 216 28 0 chr13 69048126 69048752 -32824417 + L1P5 LINE L1 4885 5523 -633 * 3726 163 96 33 chr13 69048739 69049629 -32823540 + L1MA6 LINE L1 5323 6268 -32 1895 135 0 0 chr13 69050603 69050915 -32822254 - L1P LINE L1 -765 5381 5070 2744 53 36 6 chr13 69050915 69051267 -32821902 + L1PA8 LINE L1 5802 6169 -3 29 28 0 0 chr13 69051267 69051303 -32821866 + AT_rich Low_complexity Low_complexity 1 36 0 254 357 149 21 chr13 69051348 69051676 -32821493 - L2 LINE L2 -513 2801 2432 186 352 131 54 chr13 69051670 69051968 -32821201 - L3 LINE CR1 -233 1344 1024 * 1768 162 3 7 chr13 69052019 69052316 -32820853 + AluSx SINE Alu 1 296 -16 267 103 0 0 chr13 69052318 69052357 -32820812 + (T)n Simple_repeat Simple_repeat 1 39 0 287 303 14 21 chr13 69052645 69052787 -32820382 + (TATATG)n Simple_repeat Simple_repeat 3 143 0 4169 154 58 14 chr13 69053899 69054690 -32818479 + LTR1B LTR ERV1 1 826 0 214 200 0 0 chr13 69057197 69057237 -32815932 + (TA)n Simple_repeat Simple_repeat 2 41 0 243 61 0 0 chr13 69057238 69057271 -32815898 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 231 355 47 53 chr13 69058475 69058644 -32814525 + L3 LINE CR1 1406 1573 -4 192 284 57 45 chr13 69058711 69058799 -32814370 - L2 LINE L2 -4 3268 3180 967 242 115 11 chr13 69058981 69059250 -32813919 - MSTD LTR MaLR 0 396 100 2072 107 7 0 chr13 69059425 69059715 -32813454 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr13 69061067 69061090 -32812079 + AT_rich Low_complexity Low_complexity 1 23 0 186 281 33 116 chr13 69061432 69061505 -32811664 + MER5A DNA MER1_type 2 63 -126 1441 259 82 21 chr13 69061505 69061979 -32811190 - MLT1D LTR MaLR 0 505 3 186 281 33 116 chr13 69061979 69062026 -32811143 + MER5A DNA MER1_type 63 112 -77 561 347 18 25 chr13 69062692 69062966 -32810203 + L1M3a LINE L1 1083 1354 -5673 1632 279 72 25 chr13 69063041 69063983 -32809186 + L1M3a LINE L1 1789 2767 -4340 1807 181 0 3 chr13 69064006 69064304 -32808865 + AluSx SINE Alu 3 299 -13 240 196 0 0 chr13 69064308 69064364 -32808805 + L1MC4 LINE L1 6648 6703 -1339 21 0 0 0 chr13 69064364 69064385 -32808784 + AT_rich Low_complexity Low_complexity 1 21 0 7053 245 22 19 chr13 69064385 69066445 -32806724 + L1ME LINE L1 3427 5487 -679 1309 247 3 0 chr13 69066448 69066731 -32806438 - MLT-int LTR MaLR -1220 515 232 726 223 0 6 chr13 69067260 69067417 -32805752 - MLT1G3-int LTR MaLR -1427 308 153 283 280 196 0 chr13 69067417 69067524 -32805645 - MLT1G3 LTR MaLR -192 338 211 2346 106 34 17 chr13 69068193 69068550 -32804619 - THE1B LTR MaLR -1 363 1 664 307 20 39 chr13 69068596 69068850 -32804319 + MIR SINE MIR 14 262 0 285 308 138 6 chr13 69069554 69069713 -32803456 - MLT1G3 LTR MaLR 0 590 411 383 286 34 25 chr13 69069749 69069868 -32803301 - MLT1G3 LTR MaLR -257 273 154 711 296 14 5 chr13 69070341 69070561 -32802608 + MER58A DNA MER1_type 2 223 -1 267 104 0 0 chr13 69071219 69071267 -32801902 + (T)n Simple_repeat Simple_repeat 1 48 0 1878 189 44 18 chr13 69071291 69071677 -32801492 + MSTD LTR MaLR 1 396 0 437 275 98 22 chr13 69071694 69071887 -32801282 + MLT1G LTR MaLR 32 231 -364 204 319 33 55 chr13 69072512 69072603 -32800566 + MIR SINE MIR 13 101 -161 198 71 0 0 chr13 69072700 69072728 -32800441 + (TTA)n Simple_repeat Simple_repeat 3 30 0 694 294 115 10 chr13 69073268 69073564 -32799605 - MLT1I LTR MaLR -15 394 68 22 0 0 0 chr13 69076045 69076067 -32797102 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr13 69076433 69076483 -32796686 + AT_rich Low_complexity Low_complexity 1 50 0 964 199 105 51 chr13 69076545 69076821 -32796348 - L1MC1 LINE L1 0 6333 6043 1352 160 17 80 chr13 69076821 69077121 -32796048 - Tigger7 DNA MER2_type 0 2487 2207 636 172 0 0 chr13 69077132 69077231 -32795938 - Tigger7 DNA MER2_type -2322 165 67 2912 190 13 6 chr13 69077231 69077779 -32795390 - L1MC1 LINE L1 -297 6036 5485 21 0 0 0 chr13 69078796 69078817 -32794352 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 69078854 69078875 -32794294 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 69079691 69079714 -32793455 + AT_rich Low_complexity Low_complexity 1 23 0 1530 194 4 7 chr13 69080837 69081115 -32792054 - AluJb SINE Alu -7 305 29 1227 258 0 3 chr13 69081437 69081732 -32791437 + AluJo SINE Alu 1 294 -18 498 150 60 68 chr13 69081858 69081991 -32791178 + LTR40a LTR ERVL 381 512 -7 328 306 81 0 chr13 69082062 69082186 -32790983 + HERVL40 LTR ERVL 97 230 -5300 367 271 12 0 chr13 69082561 69082646 -32790523 + HERVL40 LTR ERVL 1272 1357 -4173 274 279 128 56 chr13 69083319 69083498 -32789671 - HERVL40 LTR ERVL -2766 2764 2573 2243 307 64 32 chr13 69083523 69084895 -32788274 + HERVL40 LTR ERVL 1311 4299 -1231 391 197 0 0 chr13 69084894 69084965 -32788204 + HERVL40 LTR ERVL 2041 2111 -926 * 21 36 0 0 chr13 69085087 69085115 -32788054 + AT_rich Low_complexity Low_complexity 1 28 0 265 260 49 81 chr13 69085401 69085524 -32787645 + HERVL40 LTR ERVL 2592 2710 -327 320 361 69 15 chr13 69085657 69086048 -32787121 + MER89-int LTR ERV1 6081 6492 -309 * 459 309 168 12 chr13 69085988 69086244 -32786925 + HERVL40 LTR ERVL 5235 5530 0 297 293 89 58 chr13 69086398 69086657 -32786512 + LTR40a LTR ERVL 148 414 -105 242 196 0 0 chr13 69086749 69086795 -32786374 + L1MC4 LINE L1 6660 6705 -1337 25 65 0 0 chr13 69086821 69086867 -32786302 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr13 69086975 69086996 -32786173 + AT_rich Low_complexity Low_complexity 1 21 0 1618 204 16 21 chr13 69087751 69088123 -32785046 + L1MD1 LINE L1 5571 5940 -302 733 212 14 14 chr13 69088319 69088465 -32784704 - AluJo SINE Alu -164 148 3 39 22 0 0 chr13 69088529 69088575 -32784594 + AT_rich Low_complexity Low_complexity 1 46 0 654 304 129 22 chr13 69089162 69089659 -32783510 + MLT1H1 LTR MaLR 5 554 -1 330 151 0 14 chr13 69091626 69091699 -32781470 + L1MA4 LINE L1 6223 6294 -6 2054 129 0 0 chr13 69091819 69092105 -32781064 + AluSx SINE Alu 8 293 -19 25 51 0 0 chr13 69092793 69092832 -32780337 + AT_rich Low_complexity Low_complexity 1 39 0 264 100 0 0 chr13 69093327 69093367 -32779802 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr13 69093668 69093692 -32779477 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 11043 35 2 0 chr13 69093695 69095777 -32777392 - L1PA4 LINE L1 -13 6142 4057 1681 51 0 0 chr13 69095777 69095993 -32777176 + L1PA4 LINE L1 3841 4056 -2090 356 316 48 38 chr13 69096141 69096350 -32776819 + L1MEc LINE L1 1265 1475 -4921 238 215 140 32 chr13 69096709 69096802 -32776367 - MLT1H LTR MaLR -387 162 60 215 306 0 24 chr13 69097419 69097543 -32775626 + A-rich Low_complexity Low_complexity 5 125 0 3643 78 4 0 chr13 69097672 69098160 -32775009 - L1PA5 LINE L1 0 6154 5665 185 94 31 0 chr13 69099184 69099216 -32773953 + (TA)n Simple_repeat Simple_repeat 2 34 0 186 302 78 78 chr13 69099302 69099431 -32773738 + L3 LINE CR1 293 421 -1156 658 283 116 8 chr13 69101333 69101584 -32771585 + MER92A LTR ERV1 1 278 -134 9075 207 12 22 chr13 69101617 69103420 -32769749 - L1M1 LINE L1 -5765 1800 16 418 228 0 41 chr13 69103426 69103549 -32769620 + MER92A LTR ERV1 286 403 -9 5030 64 6 0 chr13 69103575 69104219 -32768950 + L1PA7 LINE L1 5505 6152 -2 194 320 0 27 chr13 69104226 69104301 -32768868 + L2 LINE L2 1705 1777 -1537 28 0 0 0 chr13 69104925 69104953 -32768216 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr13 69105333 69105370 -32767799 + AT_rich Low_complexity Low_complexity 1 37 0 10426 216 21 13 chr13 69105718 69108726 -32764443 + L1PA14 LINE L1 2920 5954 -207 3451 135 5 2 chr13 69108834 69109390 -32763779 + L1PA14 LINE L1 5603 6160 -1 511 345 60 26 chr13 69110891 69110951 -32762218 + L1ME1 LINE L1 34 90 -6306 189 0 0 0 chr13 69110951 69110972 -32762197 + (CAA)n Simple_repeat Simple_repeat 1 21 0 511 345 60 26 chr13 69110972 69111291 -32761878 + L1ME1 LINE L1 90 426 -5970 406 208 0 0 chr13 69111534 69111630 -32761539 - L1MB1 LINE L1 -1894 4252 4157 * 3122 215 80 26 chr13 69111626 69113215 -32759954 + L1MB1 LINE L1 4262 5946 -222 4912 171 37 37 chr13 69113215 69114949 -32758220 + L1MA6 LINE L1 4566 6300 0 730 317 79 20 chr13 69115114 69115660 -32757509 + L1ME1 LINE L1 4108 4685 -1530 * 2341 248 56 19 chr13 69115586 69116737 -32756432 - L1MB8 LINE L1 -1 6177 4077 701 152 38 0 chr13 69116745 69116877 -32756292 - Tigger1 DNA MER2_type -2140 278 142 2407 122 11 13 chr13 69116881 69117257 -32755912 + THE1C LTR MaLR 1 375 0 7283 141 134 46 chr13 69117258 69118710 -32754459 + THE1C-int LTR MaLR 2 1580 0 2140 158 41 6 chr13 69118710 69119072 -32754097 + THE1C LTR MaLR 1 375 0 607 211 30 8 chr13 69119078 69119211 -32753958 - Tigger1 DNA MER2_type -2282 136 1 225 296 59 61 chr13 69119217 69119434 -32753735 - L1MB8 LINE L1 -3595 2551 2335 1417 223 0 0 chr13 69119434 69119758 -32753411 - AluJb SINE Alu 0 324 1 225 296 59 61 chr13 69119758 69119982 -32753187 - L1MB8 LINE L1 -3811 2335 2110 444 336 40 70 chr13 69119982 69120014 -32753155 - L1M4 LINE L1 -4177 2961 2930 1168 166 22 5 chr13 69120014 69120237 -32752932 - L1MC1 LINE L1 -1 6332 6106 444 336 40 70 chr13 69120237 69120704 -32752465 - L1M4 LINE L1 -4208 2930 2477 4375 291 43 30 chr13 69121018 69123211 -32749958 - L1M4 LINE L1 -4709 2250 13 891 256 113 19 chr13 69123269 69123737 -32749432 + L1ME1 LINE L1 4686 5197 -1018 230 216 68 34 chr13 69123795 69123883 -32749286 - L1M4 LINE L1 -848 5298 5208 4002 162 60 3 chr13 69123966 69124730 -32748439 + L1MA6 LINE L1 5493 6300 0 824 279 77 53 chr13 69124823 69125292 -32747877 + L1ME1 LINE L1 5750 6229 -6 2210 120 0 0 chr13 69125593 69125902 -32747267 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 69126482 69126510 -32746659 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 69126565 69126597 -32746572 + AT_rich Low_complexity Low_complexity 1 32 0 419 311 59 18 chr13 69127006 69127225 -32745944 - MIR SINE MIR -6 256 29 23 0 0 0 chr13 69127937 69127960 -32745209 + AT_rich Low_complexity Low_complexity 1 23 0 281 259 12 12 chr13 69129781 69129862 -32743307 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 183 80 0 0 chr13 69129934 69129959 -32743210 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 202 234 11 43 chr13 69130003 69130097 -32743072 + (TA)n Simple_repeat Simple_repeat 1 91 0 256 180 0 0 chr13 69130530 69130580 -32742589 + MER61D-int LTR ERV1 205 254 -6837 697 216 121 20 chr13 69130834 69131033 -32742136 + MER61D-int LTR ERV1 235 453 -4764 3047 174 33 47 chr13 69131130 69131183 -32741986 + MER61D-int LTR ERV1 697 749 -4468 303 266 0 0 chr13 69131183 69131262 -32741907 - MADE1 DNA Mariner 0 80 2 3047 174 33 47 chr13 69131262 69131299 -32741870 + MER61D-int LTR ERV1 749 785 -4432 185 0 40 0 chr13 69131299 69131324 -32741845 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3047 174 33 47 chr13 69131324 69131991 -32741178 + MER61D-int LTR ERV1 785 4607 -610 * 9915 141 18 11 chr13 69131981 69133854 -32739315 + MER61D-int LTR ERV1 2406 5217 0 2235 175 114 8 chr13 69133854 69134310 -32738859 + MER61D LTR ERV1 1 501 0 183 42 0 0 chr13 69134742 69134766 -32738403 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 186 385 99 11 chr13 69134936 69135198 -32737971 - L2 LINE L2 -702 2612 2328 31 26 0 0 chr13 69137702 69137740 -32735429 + AT_rich Low_complexity Low_complexity 1 38 0 585 284 76 87 chr13 69138706 69138981 -32734188 - L2 LINE L2 -513 2801 2530 441 262 133 38 chr13 69138995 69139205 -32733964 + L2 LINE L2 3080 3309 -4 1606 275 96 21 chr13 69139241 69139417 -32733752 - L2 LINE L2 -774 2540 2378 2388 148 59 0 chr13 69139417 69139821 -32733348 + MSTC LTR MaLR 1 428 0 1606 275 96 21 chr13 69139821 69140251 -32732918 - L2 LINE L2 -936 2378 1889 1773 225 34 5 chr13 69140266 69140652 -32732517 - MLT1C LTR MaLR 0 467 71 915 280 69 24 chr13 69140708 69141083 -32732086 - L2 LINE L2 -1471 1843 1452 191 341 34 57 chr13 69141094 69141182 -32731987 - L2 LINE L2 -50 3222 3137 382 288 16 53 chr13 69142321 69142507 -32730662 + MIR SINE MIR 27 206 -56 270 0 0 0 chr13 69144211 69144241 -32728928 + (CA)n Simple_repeat Simple_repeat 2 31 0 193 342 79 26 chr13 69144504 69144618 -32728551 + MIR SINE MIR 11 130 -78 33 0 0 0 chr13 69145180 69145213 -32727956 + AT_rich Low_complexity Low_complexity 1 33 0 287 371 16 0 chr13 69145523 69145647 -32727522 + L2 LINE L2 3188 3313 0 8909 219 17 4 chr13 69146373 69148488 -32724681 + L1M1 LINE L1 18 2155 -5410 7926 152 5 44 chr13 69148480 69149901 -32723268 + MSTA-int LTR MaLR 117 1481 -99 * 1842 169 122 21 chr13 69149913 69150297 -32722872 + MSTA LTR MaLR 1 423 -5 4414 184 16 7 chr13 69150304 69150509 -32722660 + L1MA3 LINE L1 5236 5438 -867 2038 121 7 14 chr13 69150509 69150798 -32722371 + AluSq SINE Alu 1 287 -26 4414 184 16 7 chr13 69150798 69151620 -32721549 + L1MA3 LINE L1 5438 6299 -6 804 215 9 22 chr13 69151787 69152015 -32721154 + L1M1 LINE L1 3734 3958 -3607 1123 260 32 11 chr13 69152078 69152355 -32720814 + MSTD LTR MaLR 110 392 -4 1418 291 23 5 chr13 69152360 69152793 -32720376 + MSTD-int LTR MaLR 2 442 -1293 335 227 34 0 chr13 69152813 69152901 -32720268 + MSTD LTR MaLR 306 396 0 250 208 28 0 chr13 69152914 69152986 -32720183 + L1M1 LINE L1 3966 4039 -3526 1568 219 29 72 chr13 69154125 69154613 -32718556 + MLT1C LTR MaLR 1 467 0 1560 99 0 5 chr13 69154695 69154931 -32718238 + AluY SINE Alu 81 315 0 313 299 125 24 chr13 69154934 69155736 -32717433 + L1M1 LINE L1 4084 4989 -2576 17541 52 7 2 chr13 69155924 69158771 -32714398 + L1PA3 LINE L1 3127 5990 -165 218 140 70 0 chr13 69159173 69159230 -32713939 + (TA)n Simple_repeat Simple_repeat 2 62 0 264 59 0 0 chr13 69159744 69159778 -32713391 + (TA)n Simple_repeat Simple_repeat 1 34 0 241 353 60 20 chr13 69159964 69160114 -32713055 + MIR3 SINE MIR 49 204 -4 554 206 8 30 chr13 69160144 69160275 -32712894 - LTR40a LTR ERVL 0 519 392 628 226 111 47 chr13 69160282 69160516 -32712653 - LTR40b LTR ERVL -194 268 20 1919 120 0 11 chr13 69161089 69161364 -32711805 - AluSg SINE Alu -16 294 23 918 201 66 49 chr13 69161576 69161864 -32711305 - L1MB7 LINE L1 -29 6155 5863 393 270 0 0 chr13 69161866 69161966 -32711203 - L1M4c LINE L1 -4632 2014 1915 464 311 154 40 chr13 69161979 69162308 -32710861 - MLT1J LTR MaLR -71 440 57 2570 46 0 0 chr13 69162308 69162610 -32710559 - AluY SINE Alu -9 302 1 464 311 154 40 chr13 69162610 69162675 -32710494 - MLT1J LTR MaLR -454 57 1 1412 178 97 29 chr13 69162854 69163163 -32710006 - MER2 DNA MER2_type -7 338 9 939 224 19 80 chr13 69163399 69163663 -32709506 - MLT1E1 LTR MaLR 0 654 407 435 178 23 109 chr13 69163684 69163816 -32709353 - MLT1E1 LTR MaLR -436 188 63 340 225 0 81 chr13 69163816 69163927 -32709242 - L1M4c LINE L1 -4729 1917 1816 535 296 32 32 chr13 69163931 69164151 -32709018 - L1M4c LINE L1 -5625 917 698 471 113 0 0 chr13 69164153 69164224 -32708945 + (GGA)n Simple_repeat Simple_repeat 3 73 0 874 270 4 28 chr13 69164226 69164478 -32708691 - L1M4c LINE L1 -5854 688 443 1066 175 21 21 chr13 69164489 69164678 -32708491 + THE1-int LTR MaLR 627 815 -765 869 260 115 35 chr13 69164706 69165044 -32708125 - L1M4c LINE L1 -6165 377 13 487 304 60 8 chr13 69165287 69165537 -32707632 - Charlie2 DNA MER1_type -722 2140 1878 1802 201 48 28 chr13 69165996 69166454 -32706715 + MLT1C LTR MaLR 1 467 0 271 284 68 0 chr13 69166595 69166683 -32706486 + MLT1J1 LTR MaLR 205 298 -148 26 0 0 0 chr13 69167048 69167074 -32706095 + AT_rich Low_complexity Low_complexity 1 26 0 422 232 71 18 chr13 69167312 69167424 -32705745 + MER45A DNA AcHobo 61 178 0 766 209 21 0 chr13 69168168 69168359 -32704810 + L1MB8 LINE L1 4360 4554 -1592 823 107 123 0 chr13 69168362 69168484 -32704685 + THE1B LTR MaLR 2 138 -226 8602 113 2 1 chr13 69168484 69169673 -32703496 + THE1-int LTR MaLR 120 1309 -271 1854 233 70 24 chr13 69169775 69170390 -32702779 + L1MB8 LINE L1 5536 6178 0 680 311 66 34 chr13 69170386 69170888 -32702281 + L1ME3A LINE L1 5428 5945 -225 * 226 260 100 50 chr13 69171950 69172050 -32701119 + L2 LINE L2 3208 3312 -1 196 227 23 0 chr13 69172260 69172304 -32700865 + L3b LINE CR1 1529 1573 -10 1650 183 136 18 chr13 69172974 69173357 -32699812 + MSTA LTR MaLR 1 428 0 3181 78 48 2 chr13 69173756 69174189 -32698980 - MLT2A2 LTR ERVL 0 453 1 224 258 15 0 chr13 69174354 69174420 -32698749 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 54 0 0 chr13 69174551 69174588 -32698581 + AT_rich Low_complexity Low_complexity 1 37 0 228 368 37 7 chr13 69174826 69174962 -32698207 + LTR33 LTR ERVL 308 447 -74 644 319 76 30 chr13 69176631 69176935 -32696234 + ERVL LTR ERVL 2045 2362 -3402 751 134 0 0 chr13 69176967 69177079 -32696090 - L1PB1 LINE L1 -10 6141 6030 543 338 19 5 chr13 69177263 69177470 -32695699 - MLT1H LTR MaLR -322 227 18 1977 148 0 0 chr13 69180015 69180305 -32692864 - AluSx SINE Alu -22 290 1 237 159 0 0 chr13 69180607 69180651 -32692518 + T-rich Low_complexity Low_complexity 2 45 0 21 95 0 0 chr13 69181075 69181138 -32692031 + AT_rich Low_complexity Low_complexity 1 63 0 446 314 146 30 chr13 69182261 69182973 -32690196 + L1MCa LINE L1 861 1816 -4610 1528 305 19 10 chr13 69183236 69183721 -32689448 - ERVL LTR ERVL -3031 2733 2245 332 221 336 0 chr13 69183763 69183867 -32689302 + MER96 DNA MER1_type? 36 174 -1 22 0 0 0 chr13 69184079 69184101 -32689068 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr13 69184462 69184517 -32688652 + AT_rich Low_complexity Low_complexity 1 55 0 3379 95 2 0 chr13 69184963 69185415 -32687754 + MLT2A2 LTR ERVL 1 453 0 214 167 33 17 chr13 69185802 69185862 -32687307 + GA-rich Low_complexity Low_complexity 1 61 0 903 87 0 0 chr13 69186010 69186136 -32687033 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 5124 106 13 4 chr13 69186628 69187399 -32685770 + L1PA13 LINE L1 5367 6144 -19 1062 246 92 46 chr13 69187607 69187956 -32685213 + MLT1A1 LTR MaLR 1 365 0 447 311 193 22 chr13 69188213 69188534 -32684635 + L3 LINE CR1 1190 1565 -12 210 227 227 45 chr13 69188841 69188951 -32684218 - MER5A DNA MER1_type -48 141 12 484 235 29 7 chr13 69190381 69190517 -32682652 + MER103 DNA DNA 26 164 -2 269 218 13 64 chr13 69190885 69190963 -32682206 - Tigger2 DNA MER2_type -10 2708 2635 5463 132 3 11 chr13 69190990 69191862 -32681307 - L1PA15 LINE L1 -2 6163 5299 2128 101 90 3 chr13 69191863 69192208 -32680961 - Tigger2 DNA MER2_type -64 2654 2280 401 203 0 0 chr13 69192206 69192275 -32680894 - Tigger2 DNA MER2_type -2649 69 1 * 278 297 95 54 chr13 69193194 69193363 -32679806 - MER5A DNA MER1_type -3 186 1 340 278 37 62 chr13 69193598 69193760 -32679409 + HERVL LTR ERVL 3498 3655 -1999 423 287 19 0 chr13 69193802 69193910 -32679259 + HERVL LTR ERVL 4734 4843 -921 2099 142 44 0 chr13 69193922 69194260 -32678909 + THE1B LTR MaLR 2 354 -10 399 280 39 65 chr13 69194341 69194449 -32678720 + HERVL LTR ERVL 5015 5124 -530 2548 134 3 0 chr13 69194449 69194823 -32678346 + THE1C LTR MaLR 1 375 0 399 280 39 65 chr13 69194823 69195088 -32678081 + HERVL LTR ERVL 5124 5311 -343 300 294 84 74 chr13 69195234 69195543 -32677626 + LTR16A LTR ERVL 17 328 -122 261 57 0 0 chr13 69197429 69197464 -32675705 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 23 0 0 0 chr13 69198555 69198578 -32674591 + AT_rich Low_complexity Low_complexity 1 23 0 187 325 106 69 chr13 69199400 69199806 -32673363 - L2 LINE L2 -16 3297 2877 225 326 126 37 chr13 69200211 69200426 -32672743 - MLT1K LTR MaLR -168 420 187 313 215 0 0 chr13 69200557 69200622 -32672547 + MER53 DNA DNA 125 189 0 782 287 50 32 chr13 69200996 69201553 -32671616 + L1M4 LINE L1 4252 4818 -1328 362 273 70 21 chr13 69202031 69202339 -32670830 + L1MEc LINE L1 2282 2570 -3970 2426 61 3 3 chr13 69203191 69203503 -32669666 + THE1B-int LTR MaLR 1262 1573 -7 2041 124 47 47 chr13 69203505 69203867 -32669302 + THE1B LTR MaLR 1 362 -2 3483 221 18 4 chr13 69203867 69204709 -32668460 + L1PB4 LINE L1 4550 5403 -743 1648 157 16 3 chr13 69204719 69205025 -32668144 + L1MA2 LINE L1 5995 6304 0 3770 161 13 7 chr13 69205041 69205736 -32667433 + L1PB4 LINE L1 5447 6145 -11 915 271 83 6 chr13 69206465 69206804 -32666365 - L1ME3A LINE L1 -18 6152 5788 289 140 0 18 chr13 69207258 69207315 -32665854 + L1PA16 LINE L1 6080 6135 -31 717 266 61 95 chr13 69207710 69208350 -32664819 + L1MC5 LINE L1 6643 7260 -701 302 121 12 60 chr13 69208380 69208463 -32664706 + (CATATA)n Simple_repeat Simple_repeat 1 79 0 359 319 38 29 chr13 69208497 69208735 -32664434 + L1MC5 LINE L1 7290 7529 -432 2079 99 11 0 chr13 69209464 69209747 -32663422 + AluSq SINE Alu 1 286 -27 7153 257 42 14 chr13 69210674 69213110 -32660059 - L1 LINE L1 -1464 4682 2180 738 127 17 0 chr13 69213110 69213228 -32659941 - AluSx SINE Alu -1 309 190 1001 128 0 0 chr13 69213228 69213369 -32659800 - AluSx SINE Alu -171 141 1 776 96 0 9 chr13 69213369 69213484 -32659685 - L1PA15-16 LINE L1 -3955 2894 2781 538 135 104 0 chr13 69213486 69213582 -32659587 - U6 snRNA snRNA 0 107 2 3921 182 34 1 chr13 69213583 69213952 -32659217 - Tigger1 DNA MER2_type -1236 1182 826 408 20 0 0 chr13 69213952 69214001 -32659168 + (TG)n Simple_repeat Simple_repeat 2 50 0 3921 182 34 1 chr13 69214001 69214369 -32658800 - Tigger1 DNA MER2_type -1592 826 421 1041 304 20 9 chr13 69214731 69215077 -32658092 + L1M4b LINE L1 630 979 -5880 192 179 0 0 chr13 69215159 69215198 -32657971 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 23 0 0 0 chr13 69215217 69215240 -32657929 + AT_rich Low_complexity Low_complexity 1 23 0 703 286 91 26 chr13 69215477 69215896 -32657273 + L1ME3A LINE L1 5454 5899 -271 236 230 40 50 chr13 69216007 69216107 -32657062 + L1ME3A LINE L1 6072 6170 0 1130 148 66 0 chr13 69217102 69217298 -32655871 - Charlie3 DNA MER1_type -8 2702 2494 * 1474 208 0 7 chr13 69217297 69217566 -32655603 - Charlie3 DNA MER1_type -2443 267 1 1175 213 52 81 chr13 69217641 69217989 -32655180 + MLT1A1 LTR MaLR 28 365 0 954 98 0 8 chr13 69219802 69219935 -32653234 - L1P LINE L1 -1505 4641 4510 * 6336 90 2 0 chr13 69219932 69220819 -32652350 + L1P LINE L1 3200 4088 -2058 8462 101 7 2 chr13 69220824 69222053 -32651116 - L1P LINE L1 -2941 3205 1970 504 96 73 51 chr13 69222095 69222276 -32650893 - MER85 DNA T2_type 0 139 1 225 0 0 0 chr13 69223225 69223250 -32649919 + (CA)n Simple_repeat Simple_repeat 2 26 0 2034 107 7 0 chr13 69223459 69223740 -32649429 - AluSx SINE Alu -19 293 11 21 0 0 0 chr13 69224217 69224238 -32648931 + AT_rich Low_complexity Low_complexity 1 21 0 660 249 32 22 chr13 69224409 69224594 -32648575 + MIR SINE MIR 2 188 -74 2007 110 14 0 chr13 69224706 69225037 -32648132 - AluSq SINE Alu 0 335 1 23 33 0 0 chr13 69226516 69226546 -32646623 + AT_rich Low_complexity Low_complexity 1 30 0 293 389 16 0 chr13 69227809 69227935 -32645234 + MIR3 SINE MIR 10 137 -71 30 77 0 0 chr13 69228310 69228375 -32644794 + AT_rich Low_complexity Low_complexity 1 65 0 225 0 0 0 chr13 69230240 69230265 -32642904 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 892 231 54 17 chr13 69230686 69230980 -32642189 - L1MC3 LINE L1 -608 7177 6873 213 65 0 0 chr13 69230984 69231015 -32642154 + (TG)n Simple_repeat Simple_repeat 1 31 0 279 191 0 0 chr13 69231015 69231083 -32642086 + GA-rich Low_complexity Low_complexity 2 69 0 689 256 6 6 chr13 69231085 69231265 -32641904 - L1MC3 LINE L1 -917 6868 6689 1877 169 36 17 chr13 69231270 69231632 -32641537 - THE1C LTR MaLR -4 371 3 9698 132 8 42 chr13 69231634 69233269 -32639900 - THE1C-int LTR MaLR 0 1580 1 1781 162 41 28 chr13 69233269 69233633 -32639536 - THE1C LTR MaLR 0 375 7 1244 234 75 3 chr13 69233640 69233986 -32639183 - L1MC3 LINE L1 -1097 6688 6318 2039 231 27 2 chr13 69234133 69234617 -32638552 - L1MC3 LINE L1 -1853 5932 5437 29 70 0 0 chr13 69235457 69235514 -32637655 + AT_rich Low_complexity Low_complexity 1 57 0 237 119 0 0 chr13 69235911 69235953 -32637216 + (ATG)n Simple_repeat Simple_repeat 2 43 0 297 287 117 0 chr13 69236013 69236107 -32637062 - MIR SINE MIR -105 157 53 1404 231 3 3 chr13 69236291 69236590 -32636579 + AluJb SINE Alu 8 306 -6 454 121 43 43 chr13 69236719 69236835 -32636334 + L1M4 LINE L1 5089 5204 -942 2492 222 20 7 chr13 69236850 69237394 -32635775 + L1 LINE L1 1 551 -6658 1309 225 40 23 chr13 69237385 69237780 -32635389 + L1 LINE L1 4302 4703 -2505 * 186 43 0 0 chr13 69237952 69237975 -32635194 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1156 311 110 49 chr13 69238052 69239045 -32634124 + L1MEd LINE L1 2 1084 -5035 247 233 244 0 chr13 69239066 69239152 -32634017 + L1ME LINE L1 47 153 -5917 347 283 0 72 chr13 69239289 69239455 -32633714 + L1ME LINE L1 378 531 -5539 653 242 28 71 chr13 69239596 69239988 -32633181 + L1ME LINE L1 514 888 -5182 24 0 0 0 chr13 69290055 69290079 -32583090 + AT_rich Low_complexity Low_complexity 1 24 0 497 319 22 11 chr13 69290256 69290441 -32582728 + MIR SINE MIR 74 260 -2 283 349 0 69 chr13 69290731 69290906 -32582263 - MIR3 SINE MIR -15 193 31 281 368 0 18 chr13 69290952 69291066 -32582103 + MER5B DNA MER1_type 13 124 -54 31 44 0 0 chr13 69292033 69292078 -32581091 + AT_rich Low_complexity Low_complexity 1 45 0 658 157 16 0 chr13 69292567 69292688 -32580481 - L1PA13 LINE L1 -15 6148 6026 2101 95 49 0 chr13 69293627 69293911 -32579258 - AluY SINE Alu -9 302 5 287 330 10 0 chr13 69294556 69294659 -32578510 - MER70B LTR ERVL -16 562 459 10936 196 30 18 chr13 69295556 69297930 -32575239 - L1P4 LINE L1 -400 5761 3354 2045 112 3 7 chr13 69297930 69298225 -32574944 - AluSc SINE Alu -15 294 1 10936 196 30 18 chr13 69298225 69298750 -32574419 - L1P4 LINE L1 -2807 3354 2837 933 255 163 29 chr13 69299708 69300155 -32573014 + MLT1H LTR MaLR 40 546 -3 1955 230 91 8 chr13 69300978 69301482 -32571687 + MER44D DNA MER2_type 1 601 -4 195 42 0 0 chr13 69301617 69301641 -32571528 + (TC)n Simple_repeat Simple_repeat 1 24 0 353 319 19 32 chr13 69301899 69302056 -32571113 + L2 LINE L2 2831 2985 -328 234 0 0 0 chr13 69302523 69302549 -32570620 + (T)n Simple_repeat Simple_repeat 1 26 0 2275 110 3 3 chr13 69302549 69302884 -32570285 - THE1A LTR MaLR -20 335 1 579 330 106 3 chr13 69303355 69303658 -32569511 - LTR33 LTR ERVL -183 338 5 21 0 0 0 chr13 69303854 69303875 -32569294 + AT_rich Low_complexity Low_complexity 1 21 0 227 140 20 0 chr13 69304846 69304896 -32568273 + GA-rich Low_complexity Low_complexity 1 51 0 198 357 97 40 chr13 69306184 69306554 -32566615 + L2 LINE L2 1783 2173 -1141 24 53 0 0 chr13 69306757 69306795 -32566374 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 69308463 69308485 -32564684 + AT_rich Low_complexity Low_complexity 1 22 0 1462 199 3 10 chr13 69308821 69309113 -32564056 + AluJo SINE Alu 3 292 -20 30 27 0 0 chr13 69309176 69309213 -32563956 + AT_rich Low_complexity Low_complexity 1 37 0 43 71 0 0 chr13 69310400 69310485 -32562684 + AT_rich Low_complexity Low_complexity 1 85 0 24 0 0 0 chr13 69310731 69310755 -32562414 + AT_rich Low_complexity Low_complexity 1 24 0 501 343 69 23 chr13 69311886 69312192 -32560977 + LTR16A LTR ERVL 115 434 -16 3552 107 186 2 chr13 69312198 69312779 -32560390 - LTR12 LTR ERV1 0 688 1 362 183 0 0 chr13 69314694 69314754 -32558415 + MER90 LTR ERV1 510 569 -45 201 129 32 65 chr13 69315572 69315634 -32557535 + CT-rich Low_complexity Low_complexity 1 60 0 2407 93 0 0 chr13 69315954 69316264 -32556905 - AluY SINE Alu -1 310 1 671 229 60 5 chr13 69316509 69316710 -32556459 + L1M4 LINE L1 4039 4250 -1896 2509 244 36 1 chr13 69316741 69317458 -32555711 + L1M4 LINE L1 4404 5145 -1001 329 91 0 0 chr13 69317460 69317504 -32555665 - Alu SINE Alu -257 44 1 23 68 0 0 chr13 69318836 69318880 -32554289 + AT_rich Low_complexity Low_complexity 1 44 0 1902 117 0 8 chr13 69318915 69319212 -32553957 + AluSc SINE Alu 20 314 0 252 229 41 16 chr13 69321603 69321725 -32551444 + (TA)n Simple_repeat Simple_repeat 1 125 0 21 71 0 0 chr13 69322000 69322042 -32551127 + AT_rich Low_complexity Low_complexity 1 42 0 207 69 0 0 chr13 69322663 69322692 -32550477 + (TG)n Simple_repeat Simple_repeat 2 30 0 282 343 30 0 chr13 69323263 69323362 -32549807 - LTR67 LTR ERVL -366 191 90 1637 175 11 3 chr13 69323530 69323816 -32549353 + Ricksha DNA DNA 1 288 -2958 7339 153 33 36 chr13 69323823 69325061 -32548108 + Ricksha DNA DNA 1830 3065 -181 2180 110 7 3 chr13 69325061 69325362 -32547807 - AluSp SINE Alu -7 306 5 7339 153 33 36 chr13 69325362 69325531 -32547638 + Ricksha DNA DNA 3065 3233 -13 32 0 0 0 chr13 69326135 69326167 -32547002 + AT_rich Low_complexity Low_complexity 1 32 0 533 219 78 60 chr13 69328404 69328687 -32544482 + pTR5 LTR ERV1 741 1028 -1410 4114 116 100 70 chr13 69328766 69329568 -32543601 + LTR12 LTR ERV1 1 826 0 305 383 32 13 chr13 69329570 69329724 -32543445 - L2 LINE L2 0 3272 3116 22 35 0 0 chr13 69332431 69332460 -32540709 + AT_rich Low_complexity Low_complexity 1 29 0 311 266 11 32 chr13 69334217 69334311 -32538858 - MLT1K LTR MaLR -86 502 411 292 240 21 13 chr13 69334616 69334693 -32538476 - L1MEc LINE L1 -2461 3754 3673 2082 131 0 7 chr13 69334790 69335095 -32538074 + AluSx SINE Alu 1 303 -9 577 300 66 42 chr13 69335108 69335975 -32537194 - L1MEc LINE L1 -3639 2576 1732 798 288 74 42 chr13 69335983 69336120 -32537049 + L1M4 LINE L1 3864 3995 -2151 1863 101 3 101 chr13 69336120 69336438 -32536731 - AluSc SINE Alu -20 289 3 798 288 74 42 chr13 69336438 69336772 -32536397 + L1M4 LINE L1 3995 4350 -1796 28 79 0 0 chr13 69336888 69336951 -32536218 + AT_rich Low_complexity Low_complexity 1 63 0 537 234 158 19 chr13 69337573 69337731 -32535438 + MER5A DNA MER1_type 10 189 0 1041 277 74 55 chr13 69338187 69338768 -32534401 - MLT1E LTR MaLR 0 593 2 3338 153 61 55 chr13 69339954 69340680 -32532489 + LTR1 LTR ERV1 12 741 -44 9273 136 12 11 chr13 69340730 69342392 -32530777 + HUERS-P2 LTR ERV1 1184 2898 -190 3134 141 54 111 chr13 69342433 69343265 -32529904 + LTR1 LTR ERV1 1 785 0 325 268 98 0 chr13 69343390 69343502 -32529667 - MLT1E3 LTR MaLR -154 470 348 228 377 49 27 chr13 69345363 69345546 -32527623 - MIR SINE MIR -68 194 8 2449 182 19 19 chr13 69345751 69346382 -32526787 + LTR27 LTR ERV1 2 696 -141 751 285 119 48 chr13 69346691 69347168 -32526001 + MLT1H LTR MaLR 39 549 0 673 142 21 0 chr13 69348110 69348348 -32524821 + L1MA7 LINE L1 5943 6291 0 420 353 27 0 chr13 69348869 69349019 -32524150 + L2 LINE L2 3160 3313 0 230 333 14 0 chr13 69349171 69349243 -32523926 - MARNA DNA Mariner -381 205 133 1783 150 7 24 chr13 69349244 69349538 -32523631 - AluSq SINE Alu -23 290 2 644 296 168 19 chr13 69349856 69350177 -32522992 + L2 LINE L2 2936 3304 -9 396 318 68 59 chr13 69350290 69350614 -32522555 + L2 LINE L2 1455 1781 -1533 479 135 51 13 chr13 69350639 69350754 -32522415 + MLT1A1 LTR MaLR 274 365 0 23 68 0 0 chr13 69351962 69352006 -32521163 + AT_rich Low_complexity Low_complexity 1 44 0 1248 236 57 0 chr13 69352221 69352501 -32520668 - MLT1A1 LTR MaLR 0 365 70 21 36 0 0 chr13 69352574 69352602 -32520567 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 69353071 69353111 -32520058 + AT_rich Low_complexity Low_complexity 1 40 0 2370 123 0 3 chr13 69355075 69355433 -32517736 - L1PB1 LINE L1 -4 6147 5791 1875 247 14 0 chr13 69355583 69356069 -32517100 - L1MEc LINE L1 -1569 4646 4154 * 2830 170 37 26 chr13 69356060 69356093 -32517076 + L1PB4 LINE L1 4714 4745 -1411 610 96 0 0 chr13 69356093 69356187 -32516982 + L1PA14 LINE L1 6065 6158 -3 2830 170 37 26 chr13 69356187 69357225 -32515944 + L1PB4 LINE L1 4745 5791 -365 225 178 0 0 chr13 69357225 69357270 -32515899 + (TA)n Simple_repeat Simple_repeat 1 45 0 2149 164 8 5 chr13 69357270 69357649 -32515520 + L1PB4 LINE L1 5776 6155 -1 33 43 0 0 chr13 69357655 69357702 -32515467 + AT_rich Low_complexity Low_complexity 1 47 0 25 75 0 0 chr13 69357769 69357822 -32515347 + AT_rich Low_complexity Low_complexity 1 53 0 1245 257 163 79 chr13 69357892 69358803 -32514366 - L1MC4a LINE L1 -245 7563 6577 299 191 27 36 chr13 69358869 69358979 -32514190 + (TATAA)n Simple_repeat Simple_repeat 1 109 0 * 331 100 53 77 chr13 69358899 69359069 -32514100 + (TA)n Simple_repeat Simple_repeat 2 167 0 222 191 11 22 chr13 69359100 69359189 -32513980 + (TA)n Simple_repeat Simple_repeat 2 89 0 301 266 40 57 chr13 69359189 69359313 -32513856 + L1MC4 LINE L1 6614 6735 -1307 400 227 28 21 chr13 69359315 69359456 -32513713 + (TA)n Simple_repeat Simple_repeat 2 143 0 314 28 0 0 chr13 69360358 69360394 -32512775 + (CA)n Simple_repeat Simple_repeat 2 37 0 672 295 52 37 chr13 69360820 69361355 -32511814 - L1MEc LINE L1 -2576 3639 3097 266 243 0 29 chr13 69361358 69361428 -32511741 + CT-rich Low_complexity Low_complexity 1 68 0 373 295 36 9 chr13 69361429 69361653 -32511516 - L1MEc LINE L1 -3114 3101 2872 23 68 0 0 chr13 69361874 69361918 -32511251 + AT_rich Low_complexity Low_complexity 1 44 0 2301 99 3 0 chr13 69361921 69362224 -32510945 + AluSc SINE Alu 3 306 -3 371 359 88 20 chr13 69362445 69362843 -32510326 - L1MEc LINE L1 -5930 466 42 232 252 36 36 chr13 69362929 69363040 -32510129 - MER113 DNA MER1_type? -405 116 6 213 196 0 0 chr13 69363336 69363382 -32509787 + GA-rich Low_complexity Low_complexity 1 46 0 529 173 21 112 chr13 69363495 69363674 -32509495 - MLT1F LTR MaLR -2 593 396 262 294 0 0 chr13 69364359 69364427 -32508742 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 265 174 0 0 chr13 69364672 69364718 -32508451 - MLT2B1 LTR ERVL 0 515 470 23 97 0 0 chr13 69364718 69364790 -32508379 + AT_rich Low_complexity Low_complexity 1 72 0 1040 256 33 50 chr13 69364790 69365195 -32507974 - MLT2B1 LTR ERVL -59 461 10 2201 111 3 0 chr13 69366052 69366359 -32506810 + AluSc SINE Alu 1 308 -1 823 200 0 0 chr13 69367675 69367843 -32505326 + FRAM SINE Alu 1 168 0 190 341 137 11 chr13 69368355 69368537 -32504632 + L3 LINE CR1 919 1123 -454 276 53 0 0 chr13 69368971 69369009 -32504160 + (CAT)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr13 69369255 69369283 -32503886 + AT_rich Low_complexity Low_complexity 1 28 0 240 167 0 0 chr13 69369314 69369362 -32503807 + (TA)n Simple_repeat Simple_repeat 2 49 0 313 314 43 62 chr13 69369362 69369572 -32503597 - MIR SINE MIR -54 208 3 2201 182 19 7 chr13 69370248 69370672 -32502497 + MSTB1 LTR MaLR 1 429 -3 532 225 9 0 chr13 69370815 69370926 -32502243 + FLAM_C SINE Alu 1 112 -31 37 86 0 0 chr13 69370986 69371079 -32502090 + AT_rich Low_complexity Low_complexity 1 93 0 22 0 0 0 chr13 69373327 69373349 -32499820 + AT_rich Low_complexity Low_complexity 1 22 0 495 282 46 79 chr13 69373696 69374001 -32499168 - LTR16C LTR ERVL -10 481 187 953 247 5 0 chr13 69374762 69374952 -32498217 - MER8 DNA MER2_type 0 239 49 333 210 0 0 chr13 69376039 69376101 -32497068 - MLT1L LTR MaLR -102 513 452 226 255 0 0 chr13 69376296 69376347 -32496822 - MLT1J1 LTR MaLR -305 141 91 433 261 63 75 chr13 69376954 69377222 -32495947 + MLT1G-int LTR MaLR 1100 1364 -7 792 292 23 28 chr13 69377230 69377569 -32495600 + MLT1G LTR MaLR 4 300 -290 945 329 116 62 chr13 69377777 69377993 -32495176 - L2 LINE L2 0 3313 3110 2219 50 0 4 chr13 69377993 69378271 -32494898 + AluY SINE Alu 25 301 -10 945 329 116 62 chr13 69378271 69378857 -32494312 - L2 LINE L2 -203 3110 2557 3815 133 8 0 chr13 69378857 69379460 -32493709 - L1PA15 LINE L1 -6 6159 5552 945 329 116 62 chr13 69379460 69379922 -32493247 - L2 LINE L2 -756 2557 1978 901 276 95 0 chr13 69381260 69381543 -32491626 + MER69 DNA AcHobo 495 804 -422 2128 88 4 0 chr13 69381653 69381926 -32491243 + AluSp SINE Alu 1 274 -39 266 125 0 0 chr13 69381926 69381966 -32491203 + (GA)n Simple_repeat Simple_repeat 2 41 0 441 0 0 0 chr13 69382111 69382160 -32491009 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 684 267 29 55 chr13 69382489 69382800 -32490369 + MER69 DNA AcHobo 2115 2417 -109 881 317 130 13 chr13 69382874 69383604 -32489565 + L2 LINE L2 1901 3131 -182 238 241 13 13 chr13 69383653 69383732 -32489437 + (TA)n Simple_repeat Simple_repeat 2 80 0 201 208 0 42 chr13 69384787 69384803 -32488366 + GA-rich Low_complexity Low_complexity 3 18 -30 2401 58 0 22 chr13 69384803 69385116 -32488053 + AluSc SINE Alu 1 306 -3 2154 115 0 13 chr13 69385116 69385429 -32487740 + AluSx SINE Alu 1 310 -2 201 208 0 42 chr13 69385429 69385459 -32487710 + GA-rich Low_complexity Low_complexity 16 48 0 556 342 50 31 chr13 69385703 69386127 -32487042 - L1M4 LINE L1 -2642 3504 3073 27 0 0 0 chr13 69386128 69386155 -32487014 + AT_rich Low_complexity Low_complexity 1 27 0 1051 267 124 28 chr13 69386212 69386709 -32486460 - MLT1F1 LTR MaLR -23 544 1 22 35 0 0 chr13 69386803 69386832 -32486337 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 69387340 69387361 -32485808 + AT_rich Low_complexity Low_complexity 1 21 0 2017 213 90 4 chr13 69388173 69388675 -32484494 - L1MD1 LINE L1 -36 6600 6056 1666 233 52 47 chr13 69388720 69388943 -32484226 - L1MD1 LINE L1 -966 5574 5354 279 0 0 0 chr13 69388943 69388974 -32484195 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1666 233 52 47 chr13 69388974 69389198 -32483971 - L1MD1 LINE L1 -1186 5354 5133 1807 165 24 0 chr13 69389198 69389489 -32483680 + AluSx SINE Alu 8 305 -7 1666 233 52 47 chr13 69389489 69389745 -32483424 - L1MD1 LINE L1 -1407 5133 4866 1399 264 53 31 chr13 69389942 69390491 -32482678 - L1MD1 LINE L1 -2127 4413 3853 2196 265 74 16 chr13 69390526 69391291 -32481878 - L1MD1 LINE L1 -2748 3792 3073 5721 79 14 9 chr13 69391291 69392067 -32481102 - LTR17 LTR ERV1 0 780 1 2196 265 74 16 chr13 69392067 69392471 -32480698 - L1MD1 LINE L1 -3467 3073 2694 207 0 0 0 chr13 69392471 69392494 -32480675 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2196 265 74 16 chr13 69392494 69393080 -32480089 - L1MD1 LINE L1 -3846 2694 2144 2176 94 10 3 chr13 69393080 69393379 -32479790 + AluY SINE Alu 1 301 -10 2196 265 74 16 chr13 69393379 69394057 -32479112 - L1MD1 LINE L1 -4396 2144 1178 870 191 31 0 chr13 69394063 69394257 -32478912 + L1MA6 LINE L1 6095 6294 -6 1414 170 8 0 chr13 69394431 69394684 -32478485 - L1MA6 LINE L1 -400 5900 5646 589 165 165 0 chr13 69394692 69394819 -32478350 + L1MA3 LINE L1 6156 6303 -2 337 252 77 45 chr13 69394834 69395056 -32478113 - L1ME4a LINE L1 -254 5867 5639 21 82 0 0 chr13 69395263 69395312 -32477857 + AT_rich Low_complexity Low_complexity 1 49 0 1916 100 0 112 chr13 69395659 69395990 -32477179 + AluSc SINE Alu 1 294 -15 180 0 0 0 chr13 69396816 69396836 -32476333 + (A)n Simple_repeat Simple_repeat 1 20 0 2522 243 26 18 chr13 69397353 69398090 -32475079 - L1PA15-16 LINE L1 -4040 3544 2802 * 3216 216 13 0 chr13 69398088 69398694 -32474475 - L1PA15-16 LINE L1 -6967 614 1 40 79 0 0 chr13 69399032 69399121 -32474048 + AT_rich Low_complexity Low_complexity 1 89 0 454 200 12 0 chr13 69399600 69399685 -32473484 - LTR40b LTR ERVL -3 459 374 1312 277 20 17 chr13 69399880 69400234 -32472935 - LTR40a LTR ERVL -131 388 34 32 26 0 0 chr13 69400260 69400299 -32472870 + AT_rich Low_complexity Low_complexity 1 39 0 226 259 0 0 chr13 69400671 69400725 -32472444 + MIR SINE MIR 204 257 -5 503 330 37 25 chr13 69401030 69401357 -32471812 - L1MC4a LINE L1 -1874 5934 5604 3201 171 46 2 chr13 69401456 69402023 -32471146 + LTR26 LTR ERV1 3 594 -9 321 329 20 13 chr13 69402040 69402189 -32470980 - L1MC4a LINE L1 -2305 5503 5354 855 215 88 100 chr13 69402298 69402707 -32470462 - MLT1C LTR MaLR -63 404 1 34 24 0 0 chr13 69402810 69402851 -32470318 + AT_rich Low_complexity Low_complexity 1 41 0 1093 254 181 7 chr13 69403061 69403482 -32469687 + MLT1D LTR MaLR 12 505 0 21 71 0 0 chr13 69403611 69403653 -32469516 + AT_rich Low_complexity Low_complexity 1 42 0 81 95 0 4 chr13 69403669 69403788 -32469381 + AT_rich Low_complexity Low_complexity 1 119 -154 1973 104 0 0 chr13 69403788 69404056 -32469113 + AluSq SINE Alu 32 299 -14 81 95 0 4 chr13 69404056 69404210 -32468959 + AT_rich Low_complexity Low_complexity 119 273 0 347 275 0 5 chr13 69404399 69404509 -32468660 + MLT1J2 LTR MaLR 58 164 -282 1908 208 47 5 chr13 69405042 69405451 -32467718 + MSTB LTR MaLR 1 426 0 4434 224 71 37 chr13 69405454 69406923 -32466246 + MSTB-int LTR MaLR 4 1580 0 1772 245 21 9 chr13 69406923 69407344 -32465825 + MSTB LTR MaLR 1 426 0 1022 343 39 35 chr13 69408056 69408796 -32464373 + HERVL LTR ERVL 1789 2531 -3123 895 267 60 45 chr13 69409302 69409805 -32463364 + L1MEc LINE L1 1682 2132 -4083 32 26 0 0 chr13 69409846 69409885 -32463284 + AT_rich Low_complexity Low_complexity 1 39 0 1117 198 16 58 chr13 69410445 69410688 -32462481 + AluJo SINE Alu 44 276 -36 2127 148 5 27 chr13 69410688 69411060 -32462109 - THE1B LTR MaLR 0 364 1 11390 106 5 4 chr13 69411065 69412639 -32460530 - THE1B-int LTR MaLR -5 1575 1 1005 130 12 12 chr13 69412639 69412801 -32460368 - THE1B LTR MaLR 0 364 203 4711 100 92 48 chr13 69412801 69413592 -32459577 - LTR12 LTR ERV1 0 826 1 924 184 42 56 chr13 69413670 69413958 -32459211 - pTR5 LTR ERV1 -1410 1028 745 3633 50 42 6 chr13 69414007 69414518 -32458651 - L1PA5 LINE L1 0 6154 5658 3011 48 14 0 chr13 69414518 69415140 -32458029 + L1PA5 LINE L1 5012 5639 -515 1219 152 0 0 chr13 69415140 69415324 -32457845 - THE1B LTR MaLR -180 184 1 201 39 0 0 chr13 69415381 69415407 -32457762 + (TG)n Simple_repeat Simple_repeat 1 26 0 437 317 57 63 chr13 69415432 69415713 -32457456 + L1MEc LINE L1 1298 1576 -5145 2167 107 3 0 chr13 69415713 69416003 -32457166 + AluSx SINE Alu 1 291 -21 437 317 57 63 chr13 69416003 69416216 -32456953 + L1MEc LINE L1 1576 1789 -4932 384 266 69 112 chr13 69416321 69416670 -32456499 + LTR68 LTR ERV1 120 453 -287 325 326 124 34 chr13 69416745 69417067 -32456102 + L1MEc LINE L1 1719 2069 -4471 1176 269 100 22 chr13 69417159 69417951 -32455218 + L1MEc LINE L1 2348 3156 -3384 21 36 0 0 chr13 69418234 69418262 -32454907 + AT_rich Low_complexity Low_complexity 1 28 0 2211 126 0 7 chr13 69418306 69418615 -32454554 - AluSg SINE Alu -3 307 1 22 35 0 0 chr13 69419059 69419088 -32454081 + AT_rich Low_complexity Low_complexity 1 29 0 2377 97 0 0 chr13 69420047 69420358 -32452811 - AluSx SINE Alu 0 312 2 22 0 0 0 chr13 69420573 69420595 -32452574 + AT_rich Low_complexity Low_complexity 1 22 0 461 358 54 30 chr13 69420844 69421272 -32451897 + HERVL LTR ERVL 1918 2355 -3299 1666 186 215 165 chr13 69421653 69422624 -32450545 + LTR1B LTR ERV1 1 1020 0 2217 91 44 0 chr13 69423849 69424147 -32449022 + AluY SINE Alu 1 311 0 1622 209 40 40 chr13 69426390 69426630 -32446539 - MLT1A2 LTR MaLR 0 374 132 2003 169 40 35 chr13 69426630 69427055 -32446114 - MSTA LTR MaLR 0 428 2 1622 209 40 40 chr13 69427055 69427188 -32445981 - MLT1A2 LTR MaLR -241 133 1 23 33 0 0 chr13 69428176 69428206 -32444963 + AT_rich Low_complexity Low_complexity 1 30 0 309 333 95 7 chr13 69428298 69428466 -32444703 - MIR SINE MIR -51 211 31 1661 163 58 30 chr13 69428681 69429044 -32444125 + THE1C LTR MaLR 3 375 0 1743 239 96 84 chr13 69429209 69429982 -32443187 - LTR1B LTR ERV1 -42 784 3 270 297 42 75 chr13 69430377 69430511 -32442658 - MER5B DNA MER1_type 0 178 59 714 284 121 65 chr13 69430774 69431313 -32441856 + MLT1L LTR MaLR 1 569 -46 237 339 106 16 chr13 69432044 69432233 -32440936 + MIR SINE MIR 46 251 -11 768 248 10 40 chr13 69432595 69432797 -32440372 + MER20 DNA MER1_type 24 219 0 862 210 0 27 chr13 69432803 69432989 -32440180 - L1PA16 LINE L1 -16 6150 5970 26 50 0 0 chr13 69434436 69434476 -32438693 + AT_rich Low_complexity Low_complexity 1 40 0 1756 207 52 42 chr13 69434568 69435066 -32438103 + MLT1D LTR MaLR 3 505 0 2244 109 0 10 chr13 69436821 69437133 -32436036 + AluSc SINE Alu 1 309 0 1138 186 122 49 chr13 69437404 69437693 -32435476 + AluJo SINE Alu 1 308 0 596 243 72 28 chr13 69437857 69438038 -32435131 + MER5A DNA MER1_type 1 189 0 727 301 102 39 chr13 69438179 69438695 -32434474 + ERVL LTR ERVL 2048 2561 -2924 6835 174 47 76 chr13 69438873 69440954 -32432215 - L1MA8 LINE L1 -101 7609 5598 2542 117 100 16 chr13 69440954 69441383 -32431786 + MER4C LTR ERV1 1 465 0 6835 174 47 76 chr13 69441383 69441851 -32431318 - L1MA8 LINE L1 -2112 5598 5118 2108 148 36 20 chr13 69441851 69442209 -32430960 - THE1B LTR MaLR 0 364 1 9990 117 2 1 chr13 69442209 69443602 -32429567 - THE1B-int LTR MaLR 0 1580 186 2033 162 46 14 chr13 69443608 69443959 -32429210 - THE1B LTR MaLR 0 364 3 4579 247 60 33 chr13 69443968 69444455 -32428714 - L1MA8 LINE L1 -2467 5098 4625 2070 142 0 3 chr13 69444455 69444788 -32428381 - AluSg SINE Alu 0 310 1 4579 247 60 33 chr13 69444788 69447301 -32425868 - L1MA8 LINE L1 -2940 4625 2008 2065 248 21 49 chr13 69447317 69447931 -32425238 - L1MA8 LINE L1 -6427 1062 466 352 198 11 11 chr13 69448458 69448549 -32424620 + GA-rich Low_complexity Low_complexity 3 93 0 2205 105 0 13 chr13 69448622 69448928 -32424241 - AluSc SINE Alu 0 309 8 1522 150 0 18 chr13 69449544 69449817 -32423352 - L1PA15 LINE L1 -3 6162 5895 1767 150 7 118 chr13 69450196 69450523 -32422646 - MLT1B LTR MaLR -2 388 119 2453 67 0 25 chr13 69450523 69450837 -32422332 - AluY SINE Alu -5 306 1 1767 150 7 118 chr13 69450837 69450943 -32422226 - MLT1B LTR MaLR -271 119 3 467 193 0 0 chr13 69451657 69451740 -32421429 - L1PB4 LINE L1 -168 5988 5906 22 0 0 0 chr13 69451741 69451763 -32421406 + AT_rich Low_complexity Low_complexity 1 22 0 563 300 31 23 chr13 69452737 69452973 -32420196 + MLT1J2 LTR MaLR 1 244 -202 255 236 14 42 chr13 69453037 69453109 -32420060 + MLT1J2 LTR MaLR 335 404 -46 2486 43 17 0 chr13 69454559 69454858 -32418311 + AluY SINE Alu 1 304 -7 188 289 41 31 chr13 69454953 69455050 -32418119 - MIR SINE MIR -66 142 45 2118 127 0 6 chr13 69455107 69455421 -32417748 + AluSx SINE Alu 1 312 0 372 71 0 0 chr13 69455421 69455477 -32417692 + (TA)n Simple_repeat Simple_repeat 2 57 0 2414 105 57 0 chr13 69456458 69456811 -32416358 - THE1C LTR MaLR -2 373 1 480 300 8 8 chr13 69457675 69457805 -32415364 + MIR SINE MIR 25 154 -108 21 0 0 0 chr13 69457915 69457936 -32415233 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr13 69458066 69458102 -32415067 + AT_rich Low_complexity Low_complexity 1 36 0 506 217 236 48 chr13 69458212 69458526 -32414643 + L2 LINE L2 2941 3313 0 2296 196 40 5 chr13 69459326 69459775 -32413394 - MLT1C LTR MaLR 0 467 3 29 0 0 0 chr13 69460370 69460399 -32412770 + AT_rich Low_complexity Low_complexity 1 29 0 2299 133 5 24 chr13 69460858 69461240 -32411929 + THE1C LTR MaLR 1 375 0 35 24 0 0 chr13 69461632 69461674 -32411495 + AT_rich Low_complexity Low_complexity 1 42 0 195 310 78 35 chr13 69462308 69462424 -32410745 + MIR3 SINE MIR 84 204 -4 401 325 62 49 chr13 69462889 69463132 -32410037 - MIR SINE MIR -6 256 11 22 35 0 0 chr13 69463193 69463222 -32409947 + AT_rich Low_complexity Low_complexity 1 29 0 1542 218 67 47 chr13 69463311 69463806 -32409363 - MLT1D LTR MaLR 0 505 1 375 278 40 16 chr13 69465272 69465398 -32407771 + MER91B DNA MER1_type 1 129 -61 229 286 102 31 chr13 69465411 69465509 -32407660 + MER91B DNA MER1_type 85 189 -1 306 269 6 137 chr13 69465564 69465739 -32407430 + MIR SINE MIR 3 154 -108 180 0 0 0 chr13 69465895 69465915 -32407254 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 538 314 95 19 chr13 69466564 69466828 -32406341 - LTR16A LTR ERVL 0 450 167 257 51 26 0 chr13 69467131 69467170 -32405999 + (TAA)n Simple_repeat Simple_repeat 3 42 0 24 32 0 0 chr13 69467530 69467561 -32405608 + AT_rich Low_complexity Low_complexity 1 31 0 2000 129 52 22 chr13 69467682 69468046 -32405123 + THE1C LTR MaLR 1 375 0 1985 162 40 30 chr13 69468077 69468448 -32404721 + THE1C LTR MaLR 1 375 0 9392 117 49 40 chr13 69468452 69470014 -32403155 + THE1C-int LTR MaLR 5 1580 0 2037 115 67 22 chr13 69470016 69470373 -32402796 + THE1C LTR MaLR 3 375 0 291 71 0 0 chr13 69471249 69471291 -32401878 + (TG)n Simple_repeat Simple_repeat 2 43 0 640 320 60 29 chr13 69471573 69471889 -32401280 + ERVL LTR ERVL 2072 2397 -3367 1025 360 45 40 chr13 69471900 69472972 -32400197 + ERVL LTR ERVL 2950 4026 -1738 296 363 31 27 chr13 69473181 69473404 -32399765 + ERVL LTR ERVL 4324 4547 -1217 1755 116 70 28 chr13 69473760 69474044 -32399125 - AluSg SINE Alu -14 296 1 227 217 17 17 chr13 69474451 69474511 -32398658 + CT-rich Low_complexity Low_complexity 1 60 0 2139 96 7 7 chr13 69474621 69474927 -32398242 - AluSg SINE Alu 0 306 1 696 328 64 25 chr13 69475019 69475345 -32397824 + LTR16C LTR ERVL 74 412 -79 3745 187 38 52 chr13 69475429 69476395 -32396774 - LTR13 LTR ERVK 0 954 2 21 0 0 0 chr13 69477076 69477097 -32396072 + AT_rich Low_complexity Low_complexity 1 21 0 217 176 0 54 chr13 69477559 69477633 -32395536 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 35 41 0 0 chr13 69477778 69477827 -32395342 + AT_rich Low_complexity Low_complexity 1 49 0 249 242 10 20 chr13 69477876 69477975 -32395194 + (TA)n Simple_repeat Simple_repeat 1 98 0 347 250 53 53 chr13 69479525 69479657 -32393512 - L2 LINE L2 0 3313 3182 * 521 306 139 0 chr13 69479646 69479826 -32393343 - L2 LINE L2 -444 2870 2666 183 239 22 0 chr13 69480301 69480347 -32392822 + L2 LINE L2 3226 3272 0 247 379 35 17 chr13 69480363 69480479 -32392690 - L2 LINE L2 -6 3266 3149 471 329 86 9 chr13 69480518 69480728 -32392441 - MIR SINE MIR 0 262 37 180 97 0 0 chr13 69480937 69480968 -32392201 + (A)n Simple_repeat Simple_repeat 1 31 0 211 270 0 40 chr13 69481260 69481334 -32391835 + GA-rich Low_complexity Low_complexity 46 116 0 318 325 45 90 chr13 69482255 69482677 -32390492 - MLT1J LTR MaLR -108 403 1 203 383 28 0 chr13 69482776 69482883 -32390286 - MIR SINE MIR -8 254 145 255 254 28 0 chr13 69483247 69483318 -32389851 - MLT1K LTR MaLR -6 582 510 512 281 30 0 chr13 69483686 69483821 -32389348 + MLT2C1 LTR ERVL 36 174 -223 595 204 8 0 chr13 69483824 69483956 -32389213 + ERVL-C1 LTR ERVL 843 975 -4789 5923 249 46 23 chr13 69483959 69485497 -32387672 + ERVL-C1 LTR ERVL 1843 3415 -2349 815 258 16 10 chr13 69485496 69485690 -32387479 + ERVL-C1 LTR ERVL 3980 4174 -1480 * 4031 260 43 5 chr13 69485680 69486698 -32386471 + ERVL-C1 LTR ERVL 3423 4479 -1285 1039 216 0 0 chr13 69486699 69486889 -32386280 + MER6B DNA MER2_type 21 210 0 4193 207 82 54 chr13 69486889 69487627 -32385542 + ERVL-C1 LTR ERVL 4499 5287 -477 1502 192 10 16 chr13 69487627 69487935 -32385234 - AluJo SINE Alu -6 306 1 4193 207 82 54 chr13 69487935 69488420 -32384749 + ERVL-C1 LTR ERVL 5287 5757 -7 1219 246 18 42 chr13 69488421 69488807 -32384362 + MLT2C1 LTR ERVL 3 379 -18 1663 163 133 41 chr13 69489003 69489249 -32383920 - MSTA LTR MaLR 0 428 131 2184 104 13 0 chr13 69489249 69489547 -32383622 + AluSg SINE Alu 1 302 -8 1663 163 133 41 chr13 69489547 69489692 -32383477 - MSTA LTR MaLR -297 131 1 228 22 109 65 chr13 69490200 69490246 -32382923 - Charlie4 DNA MER1_type -1226 735 688 252 86 0 0 chr13 69490805 69490840 -32382329 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 185 344 131 25 chr13 69491332 69491846 -32381323 + L2 LINE L2 1729 2350 -964 335 264 149 0 chr13 69492251 69492338 -32380831 - L2 LINE L2 0 3272 3173 685 293 58 29 chr13 69492418 69492660 -32380509 - MIR SINE MIR -1 261 13 222 37 0 0 chr13 69493347 69493374 -32379795 + (A)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr13 69494381 69494405 -32378764 + AT_rich Low_complexity Low_complexity 1 24 0 491 343 108 19 chr13 69494687 69495049 -32378120 - L2 LINE L2 -431 2883 2490 191 36 36 0 chr13 69496058 69496086 -32377083 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1928 160 0 3 chr13 69496090 69496403 -32376766 - AluSx SINE Alu 0 312 1 224 324 86 68 chr13 69496616 69497070 -32376099 - L2 LINE L2 -1462 1852 1391 2226 116 3 0 chr13 69497411 69497713 -32375456 - AluSx SINE Alu -9 303 1 288 0 0 0 chr13 69498313 69498345 -32374824 + (TG)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr13 69500188 69500217 -32372952 + AT_rich Low_complexity Low_complexity 1 29 0 219 345 21 55 chr13 69501976 69502121 -32371048 + MIR3 SINE MIR 36 175 -33 550 171 17 8 chr13 69502397 69502514 -32370655 - MER97b DNA MER1_type? -877 176 59 215 361 14 38 chr13 69503031 69503244 -32369925 + L2 LINE L2 1723 1930 -1384 22 35 0 0 chr13 69503708 69503737 -32369432 + AT_rich Low_complexity Low_complexity 1 29 0 2187 93 24 0 chr13 69503741 69504032 -32369137 - AluSq SINE Alu -15 298 1 315 0 0 0 chr13 69504717 69504752 -32368417 + (CA)n Simple_repeat Simple_repeat 2 36 0 349 273 150 44 chr13 69505064 69505405 -32367764 - L1ME4a LINE L1 -234 5887 5511 2507 58 0 3 chr13 69507102 69507411 -32365758 + AluY SINE Alu 1 308 -3 574 285 54 67 chr13 69509244 69509685 -32363484 - MLT1G1 LTR MaLR 0 595 54 622 285 83 0 chr13 69509685 69509878 -32363291 + MER63A DNA MER1_type 1 209 -1 574 285 54 67 chr13 69509878 69509925 -32363244 - MLT1G1 LTR MaLR -541 54 8 2576 28 0 25 chr13 69510056 69510375 -32362794 - AluY SINE Alu 0 311 1 684 302 79 75 chr13 69510831 69511335 -32361834 - L2 LINE L2 -1063 2251 1746 526 348 152 7 chr13 69511336 69511646 -32361523 - L2 LINE L2 -1932 1382 1028 1120 315 53 9 chr13 69511739 69512206 -32360963 + ERVL LTR ERVL 4920 5407 -357 24 32 0 0 chr13 69512369 69512400 -32360769 + AT_rich Low_complexity Low_complexity 1 31 0 1568 308 33 44 chr13 69512516 69513176 -32359993 + MLT2F LTR ERVL 3 655 -8 22 103 0 0 chr13 69513362 69513440 -32359729 + AT_rich Low_complexity Low_complexity 1 78 0 1689 167 0 64 chr13 69513472 69513802 -32359367 + AluJo SINE Alu 2 310 -2 1034 278 89 58 chr13 69514207 69514788 -32358381 + MER21B LTR ERV1 105 818 -113 25 31 0 0 chr13 69515421 69515453 -32357716 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 69516353 69516376 -32356793 + AT_rich Low_complexity Low_complexity 1 23 0 612 317 30 10 chr13 69517206 69517408 -32355761 + MIR SINE MIR 17 222 -40 1621 142 21 68 chr13 69517567 69517892 -32355277 - AluSx SINE Alu -2 310 1 761 169 34 40 chr13 69518063 69518181 -32354988 - L1PA16 LINE L1 0 6166 6048 484 115 26 0 chr13 69518181 69518259 -32354910 + MADE1 DNA Mariner 1 80 0 761 169 34 40 chr13 69518259 69518317 -32354852 - L1PA16 LINE L1 -118 6048 5991 1703 193 91 30 chr13 69518467 69518929 -32354240 + LTR2B LTR ERV1 1 490 0 218 359 90 7 chr13 69519519 69519664 -32353505 + MIR SINE MIR 32 188 -74 353 207 98 0 chr13 69519781 69519863 -32353306 + L1MC4 LINE L1 6614 6703 -1339 373 147 9 37 chr13 69519870 69519979 -32353190 + (TA)n Simple_repeat Simple_repeat 1 106 0 22 0 0 0 chr13 69520326 69520348 -32352821 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr13 69520887 69520929 -32352240 + AT_rich Low_complexity Low_complexity 1 42 0 1757 143 3 65 chr13 69522504 69522826 -32350343 + AluSx SINE Alu 1 302 -10 2204 106 0 0 chr13 69523798 69524091 -32349078 + AluSg SINE Alu 1 293 -17 238 357 62 31 chr13 69524228 69524357 -32348812 - MIR SINE MIR -69 193 61 1241 221 32 19 chr13 69525592 69525908 -32347261 + L1MB7 LINE L1 5849 6168 -16 189 147 0 0 chr13 69526253 69526287 -32346882 + (CAA)n Simple_repeat Simple_repeat 2 35 0 319 206 73 0 chr13 69528200 69528268 -32344901 + FRAM SINE Alu 56 128 -38 27 49 0 0 chr13 69528269 69528310 -32344859 + AT_rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chr13 69528594 69528619 -32344550 + (GA)n Simple_repeat Simple_repeat 1 25 0 669 155 24 42 chr13 69529160 69529328 -32343841 + L1MB1 LINE L1 5256 5420 -748 1509 218 18 0 chr13 69529328 69529657 -32343512 + L1MB1 LINE L1 5823 6163 -5 27 0 0 0 chr13 69530249 69530276 -32342893 + AT_rich Low_complexity Low_complexity 1 27 0 1506 221 0 6 chr13 69531101 69531413 -32341756 - AluJo SINE Alu 0 312 3 272 306 0 9 chr13 69531523 69531669 -32341500 + L1ME4a LINE L1 5816 5958 -204 29 0 0 0 chr13 69531801 69531830 -32341339 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 69532005 69532029 -32341140 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 69532056 69532080 -32341089 + AT_rich Low_complexity Low_complexity 1 24 0 320 261 76 8 chr13 69532107 69532226 -32340943 + L1ME4a LINE L1 5962 6088 -33 21 0 0 0 chr13 69532333 69532354 -32340815 + AT_rich Low_complexity Low_complexity 1 21 0 2372 55 0 0 chr13 69532398 69532689 -32340480 + AluY SINE Alu 1 291 -20 22 0 0 0 chr13 69532814 69532836 -32340333 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr13 69533695 69533719 -32339450 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 610 286 89 0 chr13 69533826 69533994 -32339175 + MER5A DNA MER1_type 2 184 -5 23 0 0 0 chr13 69534244 69534267 -32338902 + AT_rich Low_complexity Low_complexity 1 23 0 189 74 0 0 chr13 69534545 69534572 -32338597 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 69535059 69535080 -32338089 + AT_rich Low_complexity Low_complexity 1 21 0 259 311 184 19 chr13 69535292 69535395 -32337774 - L2 LINE L2 -26 3287 3168 551 333 133 66 chr13 69535545 69536824 -32336345 - L2 LINE L2 -341 2973 1609 1412 181 6 66 chr13 69536969 69537301 -32335868 + AluJo SINE Alu 1 312 0 1990 62 4 16 chr13 69538200 69538458 -32334711 - AluY SINE Alu -16 295 41 29 0 0 0 chr13 69538523 69538552 -32334617 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr13 69540602 69540655 -32332514 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 69540661 69540683 -32332486 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr13 69542325 69542354 -32330815 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2099 84 7 7 chr13 69542360 69542644 -32330525 - AluSp SINE Alu -29 284 1 422 279 27 0 chr13 69542798 69542909 -32330260 - L2 LINE L2 0 3313 3200 1626 178 0 30 chr13 69544275 69544573 -32328596 + AluJb SINE Alu 1 289 -23 5708 118 13 10 chr13 69544653 69545140 -32328029 + L1PA12 LINE L1 5139 5623 -545 1847 149 70 9 chr13 69545140 69545483 -32327686 - THE1B LTR MaLR 0 364 1 5708 118 13 10 chr13 69545483 69546005 -32327164 + L1PA12 LINE L1 5623 6168 0 417 39 0 0 chr13 69546063 69546114 -32327055 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 336 344 6 11 chr13 69546649 69546829 -32326340 + MLT1L LTR MaLR 424 602 -13 237 263 26 40 chr13 69546950 69547026 -32326143 - MLT1J LTR MaLR -45 466 392 29 0 0 0 chr13 69547684 69547713 -32325456 + AT_rich Low_complexity Low_complexity 1 29 0 187 89 0 44 chr13 69547796 69547841 -32325328 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 840 206 13 22 chr13 69549518 69549746 -32323423 - L1M4 LINE L1 -1078 5068 4843 4642 203 57 3 chr13 69549839 69551030 -32322139 + L1MC2 LINE L1 5074 6331 -13 3436 249 22 1 chr13 69551781 69552499 -32320670 + L1PA13 LINE L1 1 733 -6054 915 282 77 38 chr13 69552590 69552955 -32320214 + L1PA13 LINE L1 878 1256 -5531 3299 186 13 9 chr13 69552960 69553594 -32319575 + L1PA13 LINE L1 1396 2031 -4756 248 282 56 0 chr13 69553778 69553849 -32319320 - MIR SINE MIR -186 76 2 25 0 0 0 chr13 69553961 69553986 -32319183 + AT_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr13 69554056 69554089 -32319080 + (TG)n Simple_repeat Simple_repeat 2 34 0 344 296 54 108 chr13 69554804 69555044 -32318125 + L3 LINE CR1 443 669 -908 203 287 58 11 chr13 69555636 69555723 -32317446 + L3 LINE CR1 786 876 -701 279 339 120 33 chr13 69555997 69556239 -32316930 + L3 LINE CR1 1243 1505 -72 13830 149 35 108 chr13 69556808 69560080 -32313089 + L1PA7 LINE L1 9 3038 -3108 14090 102 6 1 chr13 69560080 69562938 -32310231 + L1PA7 LINE L1 3275 6152 -2 13830 149 35 108 chr13 69562938 69562969 -32310200 + L1PA7 LINE L1 3038 3070 -3076 26 64 0 0 chr13 69563649 69563696 -32309473 + AT_rich Low_complexity Low_complexity 1 47 0 2029 143 3 0 chr13 69563754 69564061 -32309108 - AluSx SINE Alu -2 310 3 488 147 95 0 chr13 69564996 69565091 -32308078 - L1MA4A LINE L1 -868 5435 5332 4341 149 48 14 chr13 69565091 69565734 -32307435 + L1MA4A LINE L1 5442 6126 -177 720 218 160 10 chr13 69565734 69565940 -32307229 - MER8 DNA MER2_type 0 239 3 4341 149 48 14 chr13 69565940 69566119 -32307050 + L1MA4A LINE L1 6126 6297 -6 708 231 5 11 chr13 69566129 69566315 -32306854 - L1MA4 LINE L1 0 6300 6116 1984 111 0 0 chr13 69566383 69566672 -32306497 + AluSx SINE Alu 21 309 0 1981 86 0 4 chr13 69567100 69567357 -32305812 - AluSg1 SINE Alu -19 290 35 23 0 0 0 chr13 69567364 69567387 -32305782 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 69567489 69567517 -32305652 + AT_rich Low_complexity Low_complexity 1 28 0 1882 125 35 0 chr13 69567521 69567810 -32305359 + AluSp SINE Alu 1 299 -14 240 226 0 0 chr13 69567880 69567942 -32305227 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 29 0 0 0 chr13 69569098 69569127 -32304042 + AT_rich Low_complexity Low_complexity 1 29 0 754 229 63 0 chr13 69570016 69570191 -32302978 - MER5A DNA MER1_type -2 187 2 1136 220 128 33 chr13 69571807 69572267 -32300902 + L1MB1 LINE L1 2812 3315 -2831 1248 105 17 0 chr13 69572269 69572450 -32300719 + L1PB1 LINE L1 5928 6111 -40 195 100 0 0 chr13 69572450 69572480 -32300689 + (TAA)n Simple_repeat Simple_repeat 2 31 0 645 243 18 18 chr13 69572506 69572675 -32300494 + MLT1A2 LTR MaLR 155 323 -51 4097 226 34 14 chr13 69572686 69573791 -32299378 + L1MB1 LINE L1 3299 4426 -1720 3954 197 42 5 chr13 69573797 69574614 -32298555 + L1MB1 LINE L1 5321 6167 -1 1623 176 34 6 chr13 69574763 69575116 -32298053 - L1MA8 LINE L1 0 6291 5929 1996 131 19 45 chr13 69575261 69575635 -32297534 - THE1B LTR MaLR 0 364 1 343 232 45 54 chr13 69575652 69575764 -32297405 - LTR40a LTR ERVL -1 518 408 1693 136 40 4 chr13 69575793 69576065 -32297104 - AluSx SINE Alu -30 282 1 583 224 15 0 chr13 69576510 69576644 -32296525 + L1ME1 LINE L1 5411 5546 -638 773 286 85 3 chr13 69576663 69576946 -32296223 + L1ME1 LINE L1 5856 6161 -5 219 114 0 0 chr13 69577983 69578018 -32295151 + (CA)n Simple_repeat Simple_repeat 1 35 0 695 216 101 0 chr13 69578207 69578355 -32294814 - AluJo SINE Alu -24 288 126 467 45 15 0 chr13 69578770 69578836 -32294333 + (TG)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr13 69579302 69579323 -32293846 + AT_rich Low_complexity Low_complexity 1 21 0 2084 117 0 0 chr13 69580849 69581167 -32292002 - AluSx SINE Alu 0 318 1 210 134 61 12 chr13 69581275 69581357 -32291812 + (TA)n Simple_repeat Simple_repeat 1 86 0 192 345 23 11 chr13 69581384 69581471 -32291698 - L2 LINE L2 -36 3277 3190 391 361 102 60 chr13 69581817 69582296 -32290873 + L1PBa LINE L1 24 522 -6341 234 196 54 0 chr13 69582399 69582455 -32290714 + L1PBa LINE L1 1548 1606 -5257 325 315 24 75 chr13 69582483 69582775 -32290394 + L1PBb LINE L1 780 1056 -5807 4234 239 112 43 chr13 69582857 69585194 -32287975 + L1PBb LINE L1 1017 3687 -3175 681 256 117 86 chr13 69585296 69586217 -32286952 + HAL1 LINE L1 1514 2463 -44 1827 197 79 11 chr13 69590130 69590393 -32282776 - L1MA9 LINE L1 -239 6073 5765 213 94 0 0 chr13 69590393 69590425 -32282744 + (CA)n Simple_repeat Simple_repeat 2 33 0 1827 197 79 11 chr13 69590425 69590617 -32282552 - L1MA9 LINE L1 -547 5765 5587 27 29 0 0 chr13 69590645 69590679 -32282490 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr13 69591585 69591621 -32281548 + AT_rich Low_complexity Low_complexity 1 36 0 209 87 29 72 chr13 69592025 69592036 -32281133 + (TCTA)n Simple_repeat Simple_repeat 4 14 -55 2490 60 0 0 chr13 69592036 69592336 -32280833 + AluY SINE Alu 1 300 -11 209 87 29 72 chr13 69592336 69592393 -32280776 + (TCTA)n Simple_repeat Simple_repeat 14 69 0 1589 198 43 20 chr13 69592397 69592746 -32280423 - MLT2C1 LTR ERVL -40 357 1 25 31 0 0 chr13 69592919 69592951 -32280218 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr13 69593318 69593341 -32279828 + (TTA)n Simple_repeat Simple_repeat 2 24 0 27 29 0 0 chr13 69593570 69593604 -32279565 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr13 69594086 69594115 -32279054 + AT_rich Low_complexity Low_complexity 1 29 0 1193 185 33 0 chr13 69594605 69594816 -32278353 - AluJb SINE Alu -6 306 89 1417 207 34 141 chr13 69595457 69595897 -32277272 - MLT1E2 LTR MaLR -47 579 228 1933 107 11 0 chr13 69595897 69596167 -32277002 - AluSg SINE Alu -2 308 36 1417 207 34 141 chr13 69596167 69596372 -32276797 - MLT1E2 LTR MaLR -398 228 3 309 51 0 0 chr13 69597844 69597883 -32275286 + (CA)n Simple_repeat Simple_repeat 2 40 0 1846 227 142 24 chr13 69598688 69599427 -32273742 - LTR1B LTR ERV1 0 826 1 194 125 0 25 chr13 69600712 69600752 -32272417 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 705 273 35 31 chr13 69601430 69601657 -32271512 + MIR SINE MIR 22 249 -13 24 77 0 0 chr13 69601909 69601961 -32271208 + AT_rich Low_complexity Low_complexity 1 52 0 315 0 0 0 chr13 69602504 69602539 -32270630 + (CA)n Simple_repeat Simple_repeat 2 36 0 257 247 85 59 chr13 69603137 69603317 -32269852 + L1ME LINE L1 5504 5640 -481 186 189 0 0 chr13 69603317 69603354 -32269815 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 70 0 0 chr13 69603892 69603935 -32269234 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 69604067 69604096 -32269073 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 69604221 69604244 -32268925 + AT_rich Low_complexity Low_complexity 1 23 0 1659 235 14 0 chr13 69604290 69604648 -32268521 + MLT1A1 LTR MaLR 1 363 -2 384 118 0 0 chr13 69605287 69605355 -32267814 + (TA)n Simple_repeat Simple_repeat 1 68 0 363 259 106 92 chr13 69605446 69605739 -32267430 - L2 LINE L2 0 3313 3017 629 162 18 72 chr13 69605767 69605934 -32267235 + L1MA9 LINE L1 6022 6179 -133 573 304 12 17 chr13 69605938 69606178 -32266991 - L2 LINE L2 -1201 2113 1875 23 22 0 44 chr13 69606178 69606204 -32266965 + AT_rich Low_complexity Low_complexity 1 26 -17 676 189 47 0 chr13 69606204 69606331 -32266838 + FLAM_C SINE Alu 1 133 0 23 22 0 44 chr13 69606331 69606349 -32266820 + AT_rich Low_complexity Low_complexity 26 43 0 1053 203 0 5 chr13 69606360 69606552 -32266617 + AluJo SINE Alu 12 202 -110 361 242 32 0 chr13 69606563 69606658 -32266511 - AluJb SINE Alu -24 278 181 314 253 0 0 chr13 69606639 69606714 -32266455 + AluJ/FRAM SINE Alu 224 298 -4 * 834 222 0 0 chr13 69606739 69606906 -32266263 + FRAM SINE Alu 1 159 -17 1324 308 155 41 chr13 69606906 69607759 -32265410 - L2 LINE L2 -1450 1864 915 1670 109 21 32 chr13 69607931 69608216 -32264953 + L1MA2 LINE L1 6007 6288 -16 21 0 0 0 chr13 69608237 69608258 -32264911 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 69609387 69609410 -32263759 + AT_rich Low_complexity Low_complexity 1 23 0 246 353 30 8 chr13 69609859 69609992 -32263177 - MIR SINE MIR -71 191 56 2083 93 45 3 chr13 69611047 69611336 -32261833 + AluSp SINE Alu 1 301 -12 40 21 0 0 chr13 69612044 69612091 -32261078 + AT_rich Low_complexity Low_complexity 1 47 0 372 329 21 14 chr13 69612429 69612569 -32260600 + MIR3 SINE MIR 55 195 -13 52 91 0 0 chr13 69613376 69613519 -32259650 + AT_rich Low_complexity Low_complexity 1 143 0 255 358 43 82 chr13 69613943 69614150 -32259019 + MIR3 SINE MIR 1 199 -9 23 0 0 0 chr13 69614254 69614277 -32258892 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 69614381 69614401 -32258768 + (A)n Simple_repeat Simple_repeat 1 20 0 60 59 0 22 chr13 69614763 69614898 -32258271 + AT_rich Low_complexity Low_complexity 1 132 0 234 374 53 34 chr13 69615163 69615428 -32257741 + L2 LINE L2 2549 2818 -496 22 35 0 0 chr13 69616211 69616240 -32256929 + AT_rich Low_complexity Low_complexity 1 29 0 1202 221 82 27 chr13 69616518 69616957 -32256212 - MLT1C LTR MaLR -2 465 3 481 225 18 9 chr13 69617384 69617495 -32255674 + MER65A LTR ERV1 1 112 -333 563 105 12 0 chr13 69617506 69617592 -32255577 + AluY SINE Alu 206 292 -19 996 200 10 5 chr13 69617592 69617787 -32255382 + MER65A LTR ERV1 125 320 -125 2101 77 7 0 chr13 69617787 69618060 -32255109 + AluSq SINE Alu 39 313 0 189 0 0 0 chr13 69618067 69618088 -32255081 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 496 193 37 15 chr13 69618088 69618223 -32254946 + MER65A LTR ERV1 308 445 0 1362 218 89 62 chr13 69618230 69618813 -32254356 + MER65A-int LTR ERV1 11 609 -4262 3515 186 77 72 chr13 69619346 69620528 -32252641 + MER65A-int LTR ERV1 915 2493 -8 25 0 0 0 chr13 69620792 69620817 -32252352 + AT_rich Low_complexity Low_complexity 1 25 0 414 0 0 0 chr13 69620890 69620936 -32252233 + (C)n Simple_repeat Simple_repeat 1 46 0 210 229 0 29 chr13 69621054 69621159 -32252010 + (TA)n Simple_repeat Simple_repeat 2 103 0 359 204 49 127 chr13 69621180 69621464 -32251705 + MER65A-int LTR ERV1 2944 3205 -3393 557 200 72 102 chr13 69621490 69621797 -32251372 + MER65A-int LTR ERV1 2174 3194 -1686 557 217 24 72 chr13 69622096 69622303 -32250866 + MER65A-int LTR ERV1 3536 3732 -2866 2325 225 103 66 chr13 69622403 69623802 -32249367 + MER65A-int LTR ERV1 2479 5094 -1237 1826 238 102 6 chr13 69623797 69624356 -32248813 + MER65A-int LTR ERV1 3549 4393 -543 * 1965 254 54 23 chr13 69624365 69624572 -32248597 + MER65A-int LTR ERV1 4242 4441 -430 1891 120 4 4 chr13 69624572 69624878 -32248291 + AluSc SINE Alu 13 318 0 1965 254 54 23 chr13 69624878 69625280 -32247889 + MER65A-int LTR ERV1 4441 4871 0 1534 182 14 7 chr13 69625280 69625566 -32247603 + MER65A LTR ERV1 1 288 -157 368 246 31 15 chr13 69625615 69625745 -32247424 + MER65A LTR ERV1 305 436 -9 7200 178 105 21 chr13 69626241 69627784 -32245385 + MER52A LTR ERV1 1 1755 0 342 263 103 29 chr13 69629998 69630173 -32242996 - L2 LINE L2 -1 3312 3125 203 138 0 0 chr13 69630846 69630875 -32242294 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 337 35 0 chr13 69632341 69632427 -32240742 - L2 LINE L2 -1 3271 3183 35 54 0 0 chr13 69632445 69632501 -32240668 + AT_rich Low_complexity Low_complexity 1 56 0 182 343 42 49 chr13 69632534 69632677 -32240492 - MIR SINE MIR -25 237 96 299 335 106 25 chr13 69632760 69632921 -32240248 - L2 LINE L2 -201 3071 2898 186 43 0 0 chr13 69633199 69633222 -32239947 + (TTTTTG)n Simple_repeat Simple_repeat 4 26 0 1950 81 9 81 chr13 69633361 69633682 -32239487 - AluSg SINE Alu -12 298 1 180 0 0 0 chr13 69633782 69633802 -32239367 + (CAA)n Simple_repeat Simple_repeat 2 21 0 225 324 138 33 chr13 69633807 69634017 -32239152 - L2 LINE L2 -1174 2140 1909 239 233 0 14 chr13 69634351 69634424 -32238745 + GA-rich Low_complexity Low_complexity 1 72 0 385 306 100 79 chr13 69635025 69635505 -32237664 + L2 LINE L2 2824 3313 0 22 0 0 0 chr13 69636158 69636180 -32236989 + AT_rich Low_complexity Low_complexity 1 22 0 3391 51 7 7 chr13 69636201 69636649 -32236520 + LTR7 LTR ERV1 1 448 -2 5062 196 10 43 chr13 69638298 69639817 -32233352 + L1PB3 LINE L1 4259 5710 -444 255 61 0 0 chr13 69639817 69639850 -32233319 + (CATA)n Simple_repeat Simple_repeat 4 36 0 5062 196 10 43 chr13 69639850 69640275 -32232894 + L1PB3 LINE L1 5710 6148 -6 329 255 164 15 chr13 69640562 69640688 -32232481 + MIR SINE MIR 14 151 -62 237 282 65 32 chr13 69643739 69643863 -32229306 + L1ME4a LINE L1 5566 5693 -428 25 75 0 0 chr13 69643926 69643979 -32229190 + AT_rich Low_complexity Low_complexity 1 53 0 201 211 0 0 chr13 69644010 69644062 -32229107 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 271 254 40 48 chr13 69644062 69644188 -32228981 + L1ME4a LINE L1 5947 6071 -50 1951 98 98 0 chr13 69644231 69644508 -32228661 + AluSp SINE Alu 1 304 -9 265 239 64 49 chr13 69645148 69645229 -32227940 - MER5A DNA MER1_type -16 173 81 457 139 0 0 chr13 69645625 69645749 -32227420 - AluJo SINE Alu 0 350 227 * 747 250 18 0 chr13 69645748 69645912 -32227257 - AluJo SINE Alu -143 169 3 761 267 92 0 chr13 69645976 69646216 -32226953 - ORSL DNA AcHobo 0 275 14 233 215 0 25 chr13 69646632 69646711 -32226458 + CT-rich Low_complexity Low_complexity 4 80 0 379 209 0 0 chr13 69646803 69646870 -32226299 - AluJ/monomer SINE Alu -1 301 235 23 0 0 0 chr13 69647242 69647265 -32225904 + AT_rich Low_complexity Low_complexity 1 23 0 232 366 52 22 chr13 69647457 69647507 -32225662 + L2 LINE L2 3172 3219 -94 2267 99 0 34 chr13 69647507 69647830 -32225339 - AluSq SINE Alu -1 312 1 232 366 52 22 chr13 69647830 69647913 -32225256 + L2 LINE L2 3219 3309 -4 4084 145 29 3 chr13 69647988 69648721 -32224448 + L1MA5 LINE L1 5547 6298 -2 180 306 0 41 chr13 69649024 69649073 -32224096 + L2 LINE L2 3155 3201 -71 1226 332 29 33 chr13 69649125 69649801 -32223368 - L2 LINE L2 -7 3306 2626 909 100 15 0 chr13 69649806 69649936 -32223233 - MSTB LTR MaLR -294 132 1 1802 309 86 11 chr13 69649936 69650681 -32222488 - L2 LINE L2 -804 2510 1710 2273 109 0 3 chr13 69650802 69651113 -32222056 + AluSg SINE Alu 1 310 0 24 32 0 0 chr13 69651587 69651618 -32221551 + AT_rich Low_complexity Low_complexity 1 31 0 693 247 0 0 chr13 69652833 69652979 -32220190 + AluJb SINE Alu 147 292 -20 1639 160 94 13 chr13 69653130 69653448 -32219721 - MER2 DNA MER2_type 0 344 1 313 268 0 0 chr13 69653568 69653639 -32219530 - MER81 DNA DNA -36 78 8 29 47 0 0 chr13 69655086 69655129 -32218040 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chr13 69656658 69656693 -32216476 + AT_rich Low_complexity Low_complexity 1 35 0 198 245 0 0 chr13 69656981 69657030 -32216139 + L2 LINE L2 3264 3312 -1 192 265 24 36 chr13 69658296 69658379 -32214790 + MIR3 SINE MIR 120 201 -7 2143 113 0 0 chr13 69658684 69658997 -32214172 + AluSx SINE Alu 1 313 0 500 333 83 30 chr13 69661152 69661491 -32211678 + L2 LINE L2 2129 2485 -829 340 282 77 0 chr13 69661794 69661911 -32211258 + MLT1J LTR MaLR 9 134 -377 506 254 37 58 chr13 69662033 69662222 -32210947 + MLT1J LTR MaLR 327 511 0 359 275 11 0 chr13 69662222 69662313 -32210856 + Charlie8 DNA MER1_type 122 213 -2204 215 280 129 76 chr13 69662786 69662918 -32210251 - MER5A DNA MER1_type -11 178 40 797 166 11 17 chr13 69662923 69663104 -32210065 + CT-rich Low_complexity Low_complexity 1 180 0 1198 80 11 0 chr13 69663105 69663281 -32209888 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 886 166 0 0 chr13 69663304 69663443 -32209726 - FRAM SINE Alu -39 137 1 301 214 146 58 chr13 69663500 69663603 -32209566 + L2 LINE L2 3151 3262 -10 493 41 14 14 chr13 69664047 69664120 -32209049 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 22 35 0 0 chr13 69664456 69664485 -32208684 + AT_rich Low_complexity Low_complexity 1 29 0 13030 153 27 29 chr13 69765896 69768122 -32105047 + HUERS-P2 LTR ERV1 868 3088 0 955 241 55 24 chr13 69768122 69768431 -32104738 + LTR1 LTR ERV1 1 299 -527 466 271 95 3 chr13 69768628 69768824 -32104345 + L1M4 LINE L1 3566 3773 -2373 1933 132 7 0 chr13 69768993 69769273 -32103896 - AluSp SINE Alu -31 282 1 2107 13 0 0 chr13 69769282 69769510 -32103659 - AluYa5 SINE Alu -4 307 80 425 145 0 0 chr13 69769511 69769580 -32103589 - L1P LINE L1 -1567 4579 4511 5181 174 6 14 chr13 69769580 69770525 -32102644 + L1P LINE L1 3562 4499 -1647 891 342 64 11 chr13 69770990 69771426 -32101743 - LTR33 LTR ERVL -62 459 1 1362 232 31 9 chr13 69771836 69772163 -32101006 - L1MB7 LINE L1 -8 6176 5843 2669 257 11 6 chr13 69872216 69872858 -32000311 - L1M2b LINE L1 -6577 632 1 528 175 0 0 chr13 69875181 69875284 -31997885 + FLAM_A SINE Alu 40 142 0 27 49 0 0 chr13 69876305 69876346 -31996823 + AT_rich Low_complexity Low_complexity 1 41 0 1130 185 116 11 chr13 69876432 69876708 -31996461 - L1MB3 LINE L1 -278 5905 5601 2272 41 0 0 chr13 69877659 69877926 -31995243 + AluY SINE Alu 39 305 -6 225 202 0 109 chr13 69878212 69878331 -31994838 - L1MC4 LINE L1 -1324 6718 6613 203 290 14 0 chr13 69878335 69878404 -31994765 + (TA)n Simple_repeat Simple_repeat 1 70 0 180 111 0 0 chr13 69879270 69879297 -31993872 + (TAGG)n Simple_repeat Simple_repeat 1 27 0 480 255 64 20 chr13 69879359 69879563 -31993606 + L1MC5 LINE L1 7690 7902 -59 182 325 185 20 chr13 69879616 69879767 -31993402 + L3 LINE CR1 1344 1519 -58 518 345 59 49 chr13 69880026 69880618 -31992551 + L1ME3A LINE L1 71 668 -5451 2345 49 7 0 chr13 69880991 69881277 -31991892 + AluY SINE Alu 1 288 -23 355 311 21 31 chr13 69881302 69881495 -31991674 + L1ME3A LINE L1 1067 1257 -4862 1129 299 147 20 chr13 69882442 69883198 -31989971 + L1ME3A LINE L1 5300 6151 -2 303 310 116 32 chr13 69883346 69883630 -31989539 + L1MEd LINE L1 2587 2894 -3235 1383 212 17 13 chr13 69883832 69884134 -31989035 + Tigger1 DNA MER2_type 1 303 -2115 * 2853 160 30 12 chr13 69884117 69884616 -31988553 + Tigger1 DNA MER2_type 1911 2418 0 24 0 0 0 chr13 69884623 69884647 -31988522 + AT_rich Low_complexity Low_complexity 1 24 0 483 344 84 27 chr13 69884774 69885285 -31987884 + L1MEd LINE L1 3352 3891 -2238 2217 196 49 130 chr13 69885311 69886267 -31986902 - L1MA8 LINE L1 -17 6274 5396 2628 231 21 16 chr13 69886392 69887067 -31986102 - L1MA8 LINE L1 -762 5384 4707 1490 225 26 0 chr13 69887067 69887414 -31985755 + L1MD3 LINE L1 7640 7995 0 297 307 90 3 chr13 69887478 69887698 -31985471 + L1M3 LINE L1 5305 5545 -626 24 32 0 0 chr13 69888688 69888719 -31984450 + AT_rich Low_complexity Low_complexity 1 31 0 2395 70 0 0 chr13 69889355 69889654 -31983515 - AluY SINE Alu -12 299 1 192 77 0 0 chr13 69890387 69890413 -31982756 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2015 127 3 0 chr13 69890415 69890698 -31982471 - AluSq SINE Alu -29 284 1 328 342 198 25 chr13 69890706 69891101 -31982068 + L2 LINE L2 1885 2347 -967 841 263 16 5 chr13 69891101 69891291 -31981878 + MLT1A2 LTR MaLR 1 192 -182 1738 239 129 5 chr13 69891356 69891774 -31981395 - MER70A LTR ERVL 0 472 3 586 239 30 24 chr13 69891774 69891927 -31981242 + MLT1A2 LTR MaLR 237 390 0 900 336 89 11 chr13 69891979 69892508 -31980661 + L2 LINE L2 2404 2973 -341 4964 270 84 8 chr13 69892898 69894618 -31978551 + L1MA9 LINE L1 2915 4765 -1381 1863 183 100 33 chr13 69894618 69895077 -31978092 + LTR2B LTR ERV1 1 490 0 5285 181 18 7 chr13 69895077 69895357 -31977812 + L1MA9 LINE L1 4762 5037 -1275 1585 187 17 3 chr13 69895357 69895657 -31977512 + AluJb SINE Alu 1 304 -8 5285 181 18 7 chr13 69895657 69896908 -31976261 + L1MA9 LINE L1 5037 6312 0 430 304 49 16 chr13 69897139 69897323 -31975846 - MIR SINE MIR -41 221 32 30 59 0 0 chr13 69898221 69898272 -31974897 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr13 69898467 69898500 -31974669 + AT_rich Low_complexity Low_complexity 1 33 0 2110 110 7 3 chr13 69898744 69899043 -31974126 - AluSq SINE Alu -13 300 1 337 319 113 29 chr13 69899102 69899306 -31973863 - HAL1 LINE L1 -1045 1462 1242 2463 93 3 6 chr13 69899407 69899762 -31973407 - L1PB1 LINE L1 -7 6144 5791 502 53 13 13 chr13 69899767 69899842 -31973327 + (TA)n Simple_repeat Simple_repeat 2 76 0 1932 99 0 0 chr13 69899885 69899904 -31973265 - L1PB1 LINE L1 -347 5804 5786 201 74 0 0 chr13 69899904 69899931 -31973238 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1932 99 0 0 chr13 69899931 69900184 -31972985 - L1PB1 LINE L1 -364 5787 5532 241 304 49 29 chr13 69901626 69901728 -31971441 + MER5A DNA MER1_type 9 112 -77 243 0 0 0 chr13 69902384 69902411 -31970758 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2279 94 0 0 chr13 69903072 69903371 -31969798 + AluSg SINE Alu 4 302 -8 302 191 0 44 chr13 69903584 69903604 -31969565 + AluSc SINE Alu 118 134 -165 2403 80 0 0 chr13 69903604 69903903 -31969266 + AluSg SINE Alu 2 300 -10 27 29 0 0 chr13 69904089 69904123 -31969046 + AT_rich Low_complexity Low_complexity 1 34 0 1226 250 31 34 chr13 69904664 69905020 -31968149 - MLT1B LTR MaLR -5 385 31 574 258 60 6 chr13 69905029 69905196 -31967973 - MLT1B LTR MaLR -214 176 1 539 344 43 4 chr13 69905626 69905856 -31967313 + MIR SINE MIR 6 244 -18 425 323 201 14 chr13 69906038 69906455 -31966714 - L2 LINE L2 -277 3036 2551 459 224 28 0 chr13 69906798 69906812 -31966357 + L1MD3 LINE L1 7647 7659 -336 1123 237 44 75 chr13 69906812 69907331 -31965838 + MLT1D LTR MaLR 3 505 0 459 224 28 0 chr13 69907331 69907441 -31965728 + L1MD3 LINE L1 7659 7986 -9 568 276 87 42 chr13 69909308 69909594 -31963575 - L3 LINE CR1 -910 667 369 919 261 43 14 chr13 69909936 69910212 -31962957 + MLT1B LTR MaLR 8 291 -99 303 85 0 0 chr13 69910240 69910287 -31962882 + (CA)n Simple_repeat Simple_repeat 1 47 0 27 0 0 0 chr13 69910567 69910594 -31962575 + AT_rich Low_complexity Low_complexity 1 27 0 1682 183 55 65 chr13 69911652 69912067 -31961102 + MER67D LTR ERV1 18 428 -86 2047 132 33 33 chr13 69912284 69912648 -31960521 + THE1B LTR MaLR 1 364 0 898 160 9 44 chr13 69912858 69913083 -31960086 + MER31-int LTR ERV1 1287 1503 -3433 604 225 71 29 chr13 69913111 69913351 -31959818 + MER31-int LTR ERV1 1666 1915 -3021 1640 270 28 5 chr13 69913373 69913795 -31959374 + MER70B LTR ERVL 4 435 -143 1308 131 0 0 chr13 69913828 69914011 -31959158 - AluSq SINE Alu -127 186 4 775 266 67 51 chr13 69914184 69914734 -31958435 + MER31-int LTR ERV1 1914 2472 -2464 1230 218 37 70 chr13 69914930 69915005 -31958164 + MER31-int LTR ERV1 2627 2703 -2233 2025 115 3 14 chr13 69915005 69915301 -31957868 - AluSq SINE Alu -20 293 1 1230 218 37 70 chr13 69915301 69915680 -31957489 + MER31-int LTR ERV1 2703 3066 -1870 819 249 135 4 chr13 69915768 69916013 -31957156 + MER67D LTR ERV1 231 507 -7 251 245 104 47 chr13 69916103 69916209 -31956960 - MIR SINE MIR -70 192 81 363 287 52 22 chr13 69916210 69916346 -31956823 + MER69A DNA AcHobo 34 173 -4 1526 182 66 19 chr13 69916388 69916707 -31956462 + MER2 DNA MER2_type 12 345 0 355 323 40 8 chr13 69917082 69917206 -31955963 - MIR3 SINE MIR -24 184 57 2311 80 0 10 chr13 69917393 69917692 -31955477 + AluY SINE Alu 1 296 -15 234 368 0 0 chr13 69918071 69918139 -31955030 + L2 LINE L2 3246 3313 0 422 328 117 6 chr13 69918258 69918438 -31954731 - MIR SINE MIR -12 250 51 193 325 86 66 chr13 69918883 69919034 -31954135 + MIR SINE MIR 6 159 -103 1438 173 8 0 chr13 69919472 69919726 -31953443 - L1 LINE L1 -2039 4107 3852 * 3068 221 21 0 chr13 69919724 69920477 -31952692 + L1 LINE L1 3067 3835 -2311 2224 85 3 0 chr13 69922493 69922775 -31950394 - AluSp SINE Alu -30 283 1 25 0 0 0 chr13 69922876 69922901 -31950268 + AT_rich Low_complexity Low_complexity 1 25 0 23 86 0 0 chr13 69922975 69923033 -31950136 + AT_rich Low_complexity Low_complexity 1 58 0 1444 204 22 7 chr13 69923552 69923826 -31949343 + AluJo SINE Alu 1 278 -34 180 0 0 0 chr13 69923829 69923849 -31949320 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1334 140 62 4 chr13 69923876 69924119 -31949050 + L1PA13 LINE L1 5907 6163 0 23 0 0 0 chr13 69924170 69924193 -31948976 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr13 69924279 69924333 -31948836 + AT_rich Low_complexity Low_complexity 1 54 0 2349 83 0 3 chr13 69924588 69924890 -31948279 - AluY SINE Alu -8 303 3 28 0 0 0 chr13 69925134 69925162 -31948007 + AT_rich Low_complexity Low_complexity 1 28 0 1803 113 4 0 chr13 69925493 69925741 -31947428 - AluSq SINE Alu -59 254 6 21 0 0 0 chr13 69925923 69925944 -31947225 + AT_rich Low_complexity Low_complexity 1 21 0 2668 150 31 16 chr13 69926506 69927195 -31945974 + LTR1 LTR ERV1 1 785 0 296 285 103 37 chr13 69927231 69927445 -31945724 - MLT1J1 LTR MaLR -23 423 196 1958 142 20 3 chr13 69927764 69928066 -31945103 - AluSg SINE Alu -3 307 1 4943 174 30 14 chr13 69929722 69930710 -31942459 - L1MA6 LINE L1 -2 6298 5295 30 0 0 0 chr13 69930823 69930853 -31942316 + AT_rich Low_complexity Low_complexity 1 30 0 667 270 93 33 chr13 69930930 69931294 -31941875 + MLT1H1 LTR MaLR 199 555 0 222 191 0 0 chr13 69931306 69931353 -31941816 + (TG)n Simple_repeat Simple_repeat 2 48 0 335 40 0 20 chr13 69932101 69932151 -31941018 + (TG)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chr13 69932783 69932809 -31940360 + AT_rich Low_complexity Low_complexity 1 26 0 6254 241 102 57 chr13 69933477 69934225 -31938944 - L1PA13 LINE L1 -4199 2598 1885 2227 75 3 63 chr13 69934225 69934543 -31938626 - AluY SINE Alu -12 299 1 6254 241 102 57 chr13 69934543 69934647 -31938522 - L1PA13 LINE L1 -4912 1885 1787 1538 179 37 34 chr13 69934647 69934943 -31938226 + AluSx SINE Alu 6 302 -10 6254 241 102 57 chr13 69934943 69936510 -31936659 - L1PA13 LINE L1 -5010 1787 1 189 0 0 0 chr13 69936633 69936654 -31936515 + (TG)n Simple_repeat Simple_repeat 2 22 0 448 231 155 14 chr13 69937412 69937595 -31935574 + MLT1G1 LTR MaLR 1 204 -391 462 79 0 0 chr13 69937778 69937841 -31935328 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 57 0 0 chr13 69937953 69937988 -31935181 + AT_rich Low_complexity Low_complexity 1 35 0 797 258 86 0 chr13 69938738 69938947 -31934222 + MER82 DNA MER2_type 2 228 -425 253 250 14 28 chr13 69938952 69939024 -31934145 + L1 LINE L1 3 73 -6208 1379 239 46 11 chr13 69939025 69939398 -31933771 + L1 LINE L1 4980 5365 -985 710 175 30 39 chr13 69939898 69940193 -31932976 + MLT1A1 LTR MaLR 10 365 0 249 200 14 114 chr13 69940844 69940914 -31932255 - MER58 DNA MER1_type 0 2420 2358 285 29 0 0 chr13 69940950 69940984 -31932185 + (CA)n Simple_repeat Simple_repeat 1 34 0 252 329 0 0 chr13 69941025 69941095 -31932074 + L1MEd LINE L1 495 564 -5555 1978 173 26 22 chr13 69941383 69941763 -31931406 + MLT2D LTR ERVL 1 485 -35 228 174 0 0 chr13 69941765 69941811 -31931358 + LTR66 LTR ERVL 394 439 -171 * 293 130 0 0 chr13 69941805 69941851 -31931318 + MLT2C2 LTR ERVL 417 462 -2 868 253 106 45 chr13 69941921 69942233 -31930936 + MLT1D LTR MaLR 27 357 -148 411 261 42 8 chr13 69942329 69942448 -31930721 + MLT1D LTR MaLR 340 462 -5 1033 184 9 22 chr13 69942530 69942758 -31930411 - AluJo SINE Alu -4 308 84 1449 268 35 41 chr13 69942880 69943317 -31929852 + L1M4 LINE L1 2861 3294 -2852 1658 239 60 71 chr13 69943317 69943936 -31929233 + LTR9 LTR ERV1 1 612 0 1449 268 35 41 chr13 69943936 69944232 -31928937 + L1M4 LINE L1 3294 3590 -2556 409 260 20 13 chr13 69944390 69944517 -31928652 - MLT1B LTR MaLR 0 374 240 914 237 45 0 chr13 69944608 69944853 -31928316 + L1M4 LINE L1 4012 4267 -1879 997 177 0 0 chr13 69944853 69945028 -31928141 + AluSg/x SINE Alu 134 308 -2 29 47 0 0 chr13 69945162 69945205 -31927964 + AT_rich Low_complexity Low_complexity 1 43 0 1348 285 71 24 chr13 69945673 69946014 -31927155 - L2 LINE L2 -873 2441 2068 3015 108 67 4 chr13 69946014 69946495 -31926674 - MER9 LTR ERVK 0 511 1 1348 285 71 24 chr13 69946495 69946648 -31926521 - L2 LINE L2 -1246 2068 1924 1210 242 10 37 chr13 69946655 69946953 -31926216 - AluJo SINE Alu -22 290 1 235 365 26 0 chr13 69946956 69947071 -31926098 - L2 LINE L2 -1611 1703 1586 2321 132 118 0 chr13 69947134 69947550 -31925619 - MER4C LTR ERV1 0 465 1 677 238 105 11 chr13 69947674 69947855 -31925314 + MER6B DNA MER2_type 13 210 0 384 59 0 0 chr13 69947912 69947963 -31925206 + (TG)n Simple_repeat Simple_repeat 2 52 0 303 308 75 25 chr13 69948262 69948421 -31924748 - L1M4 LINE L1 -893 5955 5789 300 283 113 19 chr13 69949904 69950063 -31923106 - MLT1F1 LTR MaLR -23 519 346 422 333 32 9 chr13 69950074 69950293 -31922876 - MLT1F1 LTR MaLR -324 243 20 2131 100 0 20 chr13 69950843 69951144 -31922025 - AluSq SINE Alu -18 295 1 226 138 15 62 chr13 69951676 69951741 -31921428 + T-rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr13 69951883 69951913 -31921256 + AT_rich Low_complexity Low_complexity 1 30 0 1840 112 0 8 chr13 69952266 69952525 -31920644 - AluSg SINE Alu -51 259 3 24 67 0 0 chr13 69952858 69952903 -31920266 + AT_rich Low_complexity Low_complexity 1 45 0 9543 213 65 33 chr13 69954516 69957144 -31916025 + L1PBa LINE L1 1339 3882 -2980 1916 146 0 0 chr13 69957144 69957424 -31915745 + AluSx SINE Alu 23 302 -10 1774 143 14 0 chr13 69957425 69957705 -31915464 + AluSg SINE Alu 1 284 -26 9543 213 65 33 chr13 69957705 69958999 -31914170 + L1PBa LINE L1 3881 5465 -1397 3161 117 62 2 chr13 69959020 69959178 -31913991 + L1PB1 LINE L1 5620 5767 -384 366 23 0 0 chr13 69959178 69959221 -31913948 + (TC)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr13 69959220 69959242 -31913927 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 3161 117 62 2 chr13 69959221 69959581 -31913588 + L1PB1 LINE L1 5767 6147 -4 342 0 0 0 chr13 69959581 69959619 -31913550 + (CATA)n Simple_repeat Simple_repeat 2 39 0 7494 208 35 69 chr13 69959619 69960042 -31913127 - L1M4 LINE L1 -1311 5537 5101 237 33 0 0 chr13 69960042 69960072 -31913097 + (TG)n Simple_repeat Simple_repeat 2 31 0 7494 208 35 69 chr13 69960072 69960682 -31912487 - L1M4 LINE L1 -1747 5101 4471 703 188 0 0 chr13 69960682 69960794 -31912375 - AluJb SINE Alu -25 287 176 7494 208 35 69 chr13 69960794 69961985 -31911184 - L1M4 LINE L1 -2377 4471 3282 2556 203 58 14 chr13 69961986 69962680 -31910489 - L1M4 LINE L1 -4362 2487 1764 5249 18 2 2 chr13 69962821 69963663 -31909506 - L1P1 LINE L1 -539 5616 4775 * 5593 30 0 0 chr13 69963661 69964331 -31908838 + L1P1 LINE L1 4122 4791 -1355 2030 140 0 0 chr13 69964331 69964631 -31908538 - AluSg SINE Alu -10 300 1 1232 137 6 0 chr13 69964631 69964814 -31908355 - THE1B LTR MaLR -180 184 1 22 0 0 0 chr13 69965137 69965159 -31908010 + AT_rich Low_complexity Low_complexity 1 22 0 2045 117 0 0 chr13 69965289 69965601 -31907568 + AluSq SINE Alu 1 312 0 228 349 197 0 chr13 69966028 69966180 -31906989 - MIR SINE MIR -52 210 29 980 247 36 91 chr13 69966702 69967140 -31906029 + MLT2B1 LTR ERVL 1 414 0 21 57 0 0 chr13 69967706 69967741 -31905428 + AT_rich Low_complexity Low_complexity 1 35 0 456 180 130 0 chr13 69968070 69968170 -31904999 - L1MA10 LINE L1 0 6334 6222 21 36 0 0 chr13 69969133 69969161 -31904008 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 69969341 69969369 -31903800 + AT_rich Low_complexity Low_complexity 1 28 0 2755 82 8 0 chr13 69969809 69970198 -31902971 - L1PA8 LINE L1 -8 6164 5773 31 0 0 0 chr13 69971158 69971189 -31901980 + AT_rich Low_complexity Low_complexity 1 31 0 208 209 70 12 chr13 69971816 69971902 -31901267 + (TTTAA)n Simple_repeat Simple_repeat 3 93 0 258 333 66 58 chr13 69972508 69972856 -31900313 - L3 LINE CR1 -492 1085 735 23 0 0 0 chr13 69973065 69973088 -31900081 + AT_rich Low_complexity Low_complexity 1 23 0 1381 225 7 0 chr13 69973607 69973914 -31899255 - AluJo SINE Alu 0 309 1 22 35 0 0 chr13 69973935 69973964 -31899205 + AT_rich Low_complexity Low_complexity 1 29 0 1570 211 109 85 chr13 69974151 69974874 -31898295 - LTR1B LTR ERV1 -37 983 46 3660 193 28 58 chr13 69974874 69975756 -31897413 - HUERS-P2 LTR ERV1 -17 3071 2216 1718 163 3 17 chr13 69976947 69977236 -31895933 + AluJo SINE Alu 1 285 -27 297 0 0 0 chr13 69977236 69977269 -31895900 + (CATA)n Simple_repeat Simple_repeat 4 36 0 22 35 0 0 chr13 69977584 69977613 -31895556 + AT_rich Low_complexity Low_complexity 1 29 0 3063 203 56 14 chr13 69977814 69978628 -31894541 - L1MB8 LINE L1 -116 6062 5208 30 45 0 0 chr13 69979013 69979057 -31894112 + AT_rich Low_complexity Low_complexity 1 44 0 41 21 0 0 chr13 69979525 69979573 -31893596 + AT_rich Low_complexity Low_complexity 1 48 0 285 80 48 0 chr13 69979635 69979689 -31893480 - L1PA6 LINE L1 -6 6148 6085 231 245 0 0 chr13 69981207 69981256 -31891913 + (TA)n Simple_repeat Simple_repeat 1 49 0 223 346 40 30 chr13 69981584 69981667 -31891502 + L2 LINE L2 3209 3295 -18 1876 58 70 0 chr13 69981667 69981910 -31891259 - AluY SINE Alu -14 297 38 223 346 40 30 chr13 69981910 69981927 -31891242 + L2 LINE L2 3295 3310 -3 27 0 0 0 chr13 69982582 69982609 -31890560 + AT_rich Low_complexity Low_complexity 1 27 0 33 56 0 0 chr13 69982760 69982814 -31890355 + AT_rich Low_complexity Low_complexity 1 54 0 537 319 22 5 chr13 69983107 69983292 -31889877 + MIR SINE MIR 18 205 -57 4426 191 10 23 chr13 69983476 69984393 -31888776 + L1MA7 LINE L1 5284 6188 -103 711 64 0 0 chr13 69984394 69984488 -31888681 - AluY SINE Alu -7 304 211 503 174 0 9 chr13 69984488 69984597 -31888572 + L1MA7 LINE L1 6173 6280 -11 1794 254 19 2 chr13 69984612 69985037 -31888132 + MER82 DNA MER2_type 221 652 -1 192 77 0 0 chr13 69988575 69988601 -31884568 + (TC)n Simple_repeat Simple_repeat 1 26 0 21 71 0 0 chr13 69988844 69988886 -31884283 + AT_rich Low_complexity Low_complexity 1 42 0 690 231 39 0 chr13 69989382 69989538 -31883631 + MLT1A2 LTR MaLR 1 162 -212 180 97 0 0 chr13 69989560 69989591 -31883578 + (TCTCTG)n Simple_repeat Simple_repeat 6 36 0 764 244 22 120 chr13 69989593 69989818 -31883351 + MLT1A2 LTR MaLR 173 374 0 431 327 97 5 chr13 69990038 69990255 -31882914 + HAL1 LINE L1 97 333 -2174 1167 308 122 31 chr13 69990275 69991351 -31881818 + HAL1 LINE L1 439 1612 -895 888 322 79 54 chr13 69991361 69991575 -31881594 - L2 LINE L2 0 3313 3106 598 183 92 0 chr13 69991575 69991695 -31881474 + FLAM_C SINE Alu 1 131 -2 888 322 79 54 chr13 69991695 69992362 -31880807 - L2 LINE L2 -207 3106 2398 315 202 53 18 chr13 69992423 69992537 -31880632 + (TA)n Simple_repeat Simple_repeat 1 118 0 24 67 0 0 chr13 69992684 69992729 -31880440 + AT_rich Low_complexity Low_complexity 1 45 0 407 391 31 38 chr13 69993500 69993789 -31879380 + L1MEd LINE L1 454 740 -5379 21 36 0 0 chr13 69993853 69993881 -31879288 + AT_rich Low_complexity Low_complexity 1 28 0 271 284 57 0 chr13 69993893 69993981 -31879188 - MER92B LTR ERV1 0 636 544 384 323 34 61 chr13 69994386 69994688 -31878481 + L1MEd LINE L1 769 1257 -4862 21 0 0 0 chr13 69995133 69995154 -31878015 + AT_rich Low_complexity Low_complexity 1 21 0 328 311 7 30 chr13 69995604 69995739 -31877430 - MER90 LTR ERV1 -439 136 5 370 311 71 42 chr13 69995908 69996217 -31876952 + L1MEd LINE L1 2132 2449 -3680 2030 130 3 3 chr13 69996512 69996804 -31876365 + AluSg SINE Alu 1 292 -18 4633 64 8 6 chr13 69996977 69997627 -31875542 + L1PA7 LINE L1 5514 6164 0 711 93 0 0 chr13 69997861 69997968 -31875201 - L1MA2 LINE L1 0 6304 6198 222 356 40 31 chr13 69998791 69999013 -31874156 + L2 LINE L2 2181 2404 -910 1183 219 0 4 chr13 70000219 70000456 -31872713 + MER46A DNA MER2_type 1 236 0 26 50 0 0 chr13 70001351 70001391 -31871778 + AT_rich Low_complexity Low_complexity 1 40 0 220 237 43 11 chr13 70001785 70001878 -31871291 + (TA)n Simple_repeat Simple_repeat 1 96 0 940 66 7 7 chr13 70004275 70004426 -31868743 + (TCTA)n Simple_repeat Simple_repeat 2 152 0 2142 168 57 2 chr13 70004440 70004846 -31868323 - MSTA LTR MaLR 0 428 1 24 32 0 0 chr13 70005390 70005421 -31867748 + AT_rich Low_complexity Low_complexity 1 31 0 334 288 81 44 chr13 70005422 70005582 -31867587 + MIR SINE MIR 85 250 -12 34 65 0 0 chr13 70006049 70006111 -31867058 + AT_rich Low_complexity Low_complexity 1 62 0 24 53 0 0 chr13 70006661 70006699 -31866470 + AT_rich Low_complexity Low_complexity 1 38 0 2177 107 0 28 chr13 70006710 70007027 -31866142 + AluSq SINE Alu 1 308 -5 473 289 16 48 chr13 70007762 70007949 -31865220 + MLT1J2 LTR MaLR 266 446 -4 1206 135 15 15 chr13 70008063 70008263 -31864906 + MER30 DNA MER1_type 1 200 -30 3916 251 154 55 chr13 70008769 70009961 -31863208 + L1MA4A LINE L1 2 1311 -5538 * 3991 212 51 20 chr13 70009958 70010557 -31862612 + L1MA4A LINE L1 3033 3683 -3165 1624 174 24 0 chr13 70010557 70010851 -31862318 + AluJb SINE Alu 1 301 -11 3991 212 51 20 chr13 70010851 70011352 -31861817 + L1MA4A LINE L1 3683 4167 -2681 * 5165 165 9 29 chr13 70011330 70011352 -31861817 + L1MA4A LINE L1 5362 5383 -1622 2260 104 16 0 chr13 70011352 70011659 -31861510 + AluSp SINE Alu 1 312 -1 5165 165 9 29 chr13 70011659 70013143 -31860026 + L1MA4A LINE L1 5383 6840 -165 2125 100 0 7 chr13 70013480 70013770 -31859399 + AluSg1 SINE Alu 14 301 -8 618 154 96 0 chr13 70013774 70013930 -31859239 + L1MA4A LINE L1 6830 7000 -5 255 61 0 0 chr13 70013993 70014026 -31859143 - Tigger2a DNA MER2_type 0 434 402 1301 150 51 31 chr13 70014032 70014286 -31858883 - Tigger2a DNA MER2_type -175 259 1 252 77 0 0 chr13 70014345 70014384 -31858785 + (TG)n Simple_repeat Simple_repeat 2 40 0 1482 178 3 63 chr13 70014384 70014687 -31858482 - AluJo SINE Alu -27 285 1 1104 230 31 93 chr13 70014996 70015383 -31857786 - MLT1A2 LTR MaLR -11 363 1 721 315 126 31 chr13 70015582 70016203 -31856966 - L2 LINE L2 -122 3191 2522 625 82 21 52 chr13 70016205 70016302 -31856867 - MSTA LTR MaLR -1 427 334 1192 201 122 50 chr13 70016591 70016969 -31856200 - MSTA LTR MaLR -23 405 1 580 244 0 0 chr13 70018013 70018128 -31855041 + FLAM_A SINE Alu 1 115 -18 5111 147 17 34 chr13 70018701 70019339 -31853830 - HSMAR2 DNA Mariner -3 1299 679 1400 181 39 78 chr13 70019339 70019531 -31853638 - AluJo SINE Alu -15 297 120 261 0 0 0 chr13 70019531 70019560 -31853609 + (TA)n Simple_repeat Simple_repeat 1 29 0 1400 181 39 78 chr13 70019560 70019676 -31853493 - AluJo SINE Alu -192 120 1 5111 147 17 34 chr13 70019676 70019931 -31853238 - HSMAR2 DNA Mariner -623 679 421 1296 210 85 20 chr13 70019931 70020283 -31852886 - THE1C LTR MaLR 0 375 1 2158 152 41 17 chr13 70020283 70020455 -31852714 - HSMAR2 DNA Mariner -877 425 259 1944 165 24 27 chr13 70020455 70020831 -31852338 - THE1C LTR MaLR 0 375 1 2158 152 41 17 chr13 70020831 70021072 -31852097 - HSMAR2 DNA Mariner -1043 259 2 21 36 0 0 chr13 70022823 70022851 -31850318 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 70023282 70023308 -31849861 + AT_rich Low_complexity Low_complexity 1 26 0 248 104 21 99 chr13 70023310 70023502 -31849667 + (TTATA)n Simple_repeat Simple_repeat 2 178 0 245 168 42 21 chr13 70023508 70023603 -31849566 + (TA)n Simple_repeat Simple_repeat 2 98 0 23 78 0 0 chr13 70024240 70024291 -31848878 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr13 70024701 70024722 -31848447 + AT_rich Low_complexity Low_complexity 1 21 0 1519 232 43 117 chr13 70025890 70026542 -31846627 - MER77 LTR ERV1 0 605 2 381 148 0 0 chr13 70026698 70026779 -31846390 + (GA)n Simple_repeat Simple_repeat 2 82 0 3862 205 47 28 chr13 70027131 70028265 -31844904 - L1MB3 LINE L1 -4 6415 5267 1256 250 111 22 chr13 70028255 70028879 -31844290 - L1MB3 LINE L1 -2793 3589 2911 * 569 190 25 8 chr13 70028869 70028990 -31844179 - L1MB3 LINE L1 -5376 1008 886 * 6134 55 10 0 chr13 70028991 70029775 -31843394 - L1PA7 LINE L1 0 6154 5363 * 12582 92 8 10 chr13 70029772 70031596 -31841573 + L1PA7 LINE L1 3528 5347 -799 743 188 28 17 chr13 70031594 70031770 -31841399 - L1MB3 LINE L1 -5485 899 722 * 21 36 0 0 chr13 70031870 70031898 -31841271 + AT_rich Low_complexity Low_complexity 1 28 0 2150 201 97 60 chr13 70031898 70032561 -31840608 - L1MB3 LINE L1 -5693 691 5 32 43 0 0 chr13 70032675 70032721 -31840448 + AT_rich Low_complexity Low_complexity 1 46 0 5210 148 12 4 chr13 70033167 70034066 -31839103 - L1MC1 LINE L1 0 6333 5428 22 0 0 0 chr13 70034385 70034407 -31838762 + AT_rich Low_complexity Low_complexity 1 22 0 200 368 46 11 chr13 70034439 70034526 -31838643 + MIR SINE MIR 23 112 -150 303 328 97 5 chr13 70034744 70034930 -31838239 + MIR SINE MIR 48 250 -12 261 387 34 8 chr13 70035130 70035249 -31837920 + MIR SINE MIR 1 122 -140 487 110 0 22 chr13 70035303 70035394 -31837775 + (TTAA)n Simple_repeat Simple_repeat 1 89 0 7489 195 24 59 chr13 70036152 70037910 -31835259 - L1MA9 LINE L1 0 6312 4693 1469 165 109 4 chr13 70037910 70038177 -31834992 - AluSx SINE Alu -15 297 3 7489 195 24 59 chr13 70038177 70039370 -31833799 - L1MA9 LINE L1 -1619 4693 3459 231 343 102 0 chr13 70039484 70039621 -31833548 - L2 LINE L2 -1021 2293 2143 213 360 169 6 chr13 70040406 70040584 -31832585 - MIR SINE MIR -5 257 51 1766 234 6 102 chr13 70041877 70042109 -31831060 - MLT2B3 LTR ERVL -52 502 348 2543 55 0 0 chr13 70042109 70042419 -31830750 + AluY SINE Alu 1 310 -1 1766 234 6 102 chr13 70042419 70042715 -31830454 - MLT2B3 LTR ERVL -206 348 25 1820 136 3 37 chr13 70042798 70043093 -31830076 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr13 70043093 70043114 -31830055 + (GGAGAA)n Simple_repeat Simple_repeat 3 23 0 2513 116 6 3 chr13 70043949 70044312 -31828857 + THE1B LTR MaLR 1 364 0 2320 88 0 3 chr13 70044351 70044646 -31828523 - AluSp SINE Alu -19 294 1 442 31 31 0 chr13 70045764 70045828 -31827341 + (TG)n Simple_repeat Simple_repeat 1 66 0 258 257 55 18 chr13 70046720 70046829 -31826340 - L2 LINE L2 -1264 2050 1938 22 35 0 0 chr13 70047026 70047055 -31826114 + AT_rich Low_complexity Low_complexity 1 29 0 379 224 184 26 chr13 70047108 70047260 -31825909 + MLT1J LTR MaLR 89 264 -247 192 77 0 0 chr13 70048690 70048716 -31824453 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 348 284 254 8 chr13 70048726 70048860 -31824309 - MER5A DNA MER1_type -13 176 10 39 68 0 0 chr13 70049475 70049549 -31823620 + AT_rich Low_complexity Low_complexity 1 74 0 11479 198 14 14 chr13 70049685 70055900 -31817269 + L1PB1 LINE L1 6 6517 -350 261 111 26 69 chr13 70055900 70056108 -31817061 + (TA)n Simple_repeat Simple_repeat 1 199 0 2122 139 5 24 chr13 70056109 70056483 -31816686 + L1PB1 LINE L1 6500 6866 -1 197 56 0 56 chr13 70056486 70056522 -31816647 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 203 133 0 44 chr13 70056841 70056886 -31816283 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 2985 292 41 20 chr13 70057466 70058995 -31814174 + L1PBa LINE L1 3 1121 -5742 3002 152 21 97 chr13 70058995 70059740 -31813429 - LTR8 LTR ERV1 0 691 3 2985 292 41 20 chr13 70059740 70060275 -31812894 + L1PBa LINE L1 1121 1643 -5220 * 4904 206 64 12 chr13 70060262 70062011 -31811158 + L1PB3 LINE L1 582 2426 -3777 6214 186 14 16 chr13 70062017 70064282 -31808887 + L1PB3 LINE L1 3873 6210 -1 297 212 15 0 chr13 70064367 70064433 -31808736 - MLT1I LTR MaLR -19 390 324 26 30 0 0 chr13 70064452 70064485 -31808684 + AT_rich Low_complexity Low_complexity 1 33 0 211 325 102 25 chr13 70065270 70065427 -31807742 + L2 LINE L2 2892 3060 -212 377 253 143 11 chr13 70065656 70065838 -31807331 - L1ME3A LINE L1 -2 6168 5963 744 159 38 13 chr13 70065937 70066094 -31807075 - L1MB1 LINE L1 0 6168 6008 23 0 0 0 chr13 70066250 70066273 -31806896 + AT_rich Low_complexity Low_complexity 1 23 0 1846 92 0 8 chr13 70067319 70067558 -31805611 + AluSp SINE Alu 50 286 -27 660 144 96 0 chr13 70068035 70068160 -31805009 - AluSg/x SINE Alu 0 312 176 234 366 37 0 chr13 70068720 70068802 -31804367 - MIR3 SINE MIR -41 167 83 3240 164 58 23 chr13 70070490 70071178 -31801991 - L1MA9 LINE L1 -263 6049 5338 4958 219 36 13 chr13 70071178 70072437 -31800732 + L1MA9 LINE L1 4059 5347 -799 23 0 0 0 chr13 70072793 70072816 -31800353 + AT_rich Low_complexity Low_complexity 1 23 0 789 316 69 15 chr13 70072838 70073173 -31799996 + LTR16B LTR ERVL 3 355 -109 32 26 0 0 chr13 70073218 70073257 -31799912 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr13 70073257 70073277 -31799892 + (TA)n Simple_repeat Simple_repeat 2 21 0 1766 111 50 25 chr13 70073277 70073556 -31799613 - AluSc SINE Alu -23 286 1 258 279 59 0 chr13 70073556 70073624 -31799545 + LTR16B LTR ERVL 388 459 -5 420 288 33 39 chr13 70073963 70074116 -31799053 + MIR SINE MIR 111 262 0 23 0 0 0 chr13 70074144 70074167 -31799002 + AT_rich Low_complexity Low_complexity 1 23 0 446 319 28 14 chr13 70074238 70074382 -31798787 + MER5A DNA MER1_type 43 188 -1 206 95 24 0 chr13 70074563 70074605 -31798564 + (TTTTTG)n Simple_repeat Simple_repeat 5 47 0 21 0 0 0 chr13 70074641 70074662 -31798507 + AT_rich Low_complexity Low_complexity 1 21 0 39 22 0 0 chr13 70075238 70075284 -31797885 + AT_rich Low_complexity Low_complexity 1 46 0 1541 156 127 89 chr13 70076387 70076835 -31796334 - LTR18B LTR ERVL -149 465 1 3545 168 3 35 chr13 70077167 70077776 -31795393 - HERVL18 LTR ERVL -2559 3488 2899 746 172 104 0 chr13 70077772 70077906 -31795263 + HERVL18 LTR ERVL 2764 2911 -3136 * 3004 133 55 0 chr13 70077935 70078410 -31794759 - L1PA12 LINE L1 -153 6015 5515 1339 130 0 0 chr13 70078423 70078615 -31794554 + AluSg/x SINE Alu 106 297 -15 497 97 0 0 chr13 70078616 70078688 -31794481 - L1PA12 LINE L1 -633 5528 5457 1359 106 14 5 chr13 70078691 70078909 -31794260 + L1PA12 LINE L1 5254 5473 -695 21 71 0 0 chr13 70079496 70079538 -31793631 + AT_rich Low_complexity Low_complexity 1 42 0 903 136 0 0 chr13 70079644 70079791 -31793378 + (TA)n Simple_repeat Simple_repeat 2 148 0 2891 206 38 14 chr13 70080035 70081311 -31791858 - L1MA4 LINE L1 -44 6256 4829 5926 141 49 8 chr13 70081322 70082308 -31790861 + L1PBa LINE L1 1 1026 -5837 25 31 0 0 chr13 70083783 70083815 -31789354 + AT_rich Low_complexity Low_complexity 1 32 0 343 233 108 0 chr13 70083897 70083940 -31789229 - L1MA10 LINE L1 -2 6332 6290 498 291 166 12 chr13 70083940 70084266 -31788903 - L1ME1 LINE L1 -48 6118 5743 278 239 0 45 chr13 70084266 70084354 -31788815 - L1MEc LINE L1 -5540 856 773 595 302 100 26 chr13 70084355 70084696 -31788473 - L1MEc LINE L1 -5760 636 271 * 3085 143 21 0 chr13 70084695 70085296 -31787873 - L1P4 LINE L1 -406 5755 5146 285 326 37 15 chr13 70085292 70085427 -31787742 - L1MEc LINE L1 -6128 268 131 * 32 0 0 0 chr13 70085973 70086005 -31787164 + AT_rich Low_complexity Low_complexity 1 32 0 1175 308 118 14 chr13 70086208 70086527 -31786642 - MLT1G LTR MaLR -27 563 170 1428 153 8 0 chr13 70086527 70086781 -31786388 + L1MA4 LINE L1 6045 6300 0 1175 308 118 14 chr13 70086781 70086971 -31786198 - MLT1G LTR MaLR -420 170 1 1220 105 6 0 chr13 70087706 70087877 -31785292 + THE1-int LTR MaLR 932 1103 -477 2280 127 6 11 chr13 70087881 70088236 -31784933 - THE1A LTR MaLR 0 355 3 11397 103 4 1 chr13 70088238 70089812 -31783357 - THE1A-int LTR MaLR 0 1580 1 2070 148 20 11 chr13 70089812 70090164 -31783005 - THE1A LTR MaLR 0 355 1 2404 75 0 7 chr13 70090692 70090999 -31782170 - AluY SINE Alu -6 305 1 266 359 61 52 chr13 70091193 70091424 -31781745 - L2 LINE L2 -45 3227 2995 30 27 0 0 chr13 70091538 70091575 -31781594 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 70091856 70091879 -31781290 + AT_rich Low_complexity Low_complexity 1 23 0 1794 240 62 18 chr13 70092712 70093200 -31779969 - LTR40a LTR ERVL -8 511 3 247 113 38 0 chr13 70093213 70093266 -31779903 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 225 0 0 0 chr13 70093266 70093291 -31779878 + (CATA)n Simple_repeat Simple_repeat 4 28 0 224 303 146 0 chr13 70094257 70094346 -31778823 - MIR SINE MIR 0 262 161 215 313 137 15 chr13 70095122 70095253 -31777916 - MIR SINE MIR -74 188 42 1374 212 103 29 chr13 70095344 70095722 -31777447 + LTR52 LTR ERVL 10 415 -6 2130 135 24 29 chr13 70096081 70096458 -31776711 - THE1C LTR MaLR 0 375 1 521 238 52 23 chr13 70098000 70098254 -31774915 - LTR37B LTR ERV1 0 426 208 1745 118 14 24 chr13 70098749 70099057 -31774112 + AluSx SINE Alu 1 305 0 1722 76 29 118 chr13 70099310 70099421 -31773748 + AluYb8 SINE Alu 9 128 -190 2220 0 0 0 chr13 70099421 70099669 -31773500 + L1PA2 LINE L1 5906 6153 -2 1722 76 29 118 chr13 70099669 70099872 -31773297 + AluYb8 SINE Alu 128 295 -23 21 0 0 0 chr13 70099980 70100001 -31773168 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 70100937 70100970 -31772199 + AT_rich Low_complexity Low_complexity 1 33 0 1000 302 60 66 chr13 70101125 70101975 -31771194 + MER4A-int LTR ERV1 1295 2139 -2508 2327 156 15 38 chr13 70101977 70102453 -31770716 + LTR60 LTR ERV1 1 465 -121 927 275 25 12 chr13 70102443 70102683 -31770486 - MER21B LTR ERV1 -578 285 43 * 3075 263 60 53 chr13 70102785 70103964 -31769205 + MER4A-int LTR ERV1 2517 3704 -943 449 327 22 73 chr13 70104133 70104405 -31768764 + MER4A-int LTR ERV1 4140 4397 -250 2552 119 58 29 chr13 70105436 70105888 -31767281 - MER4C LTR ERV1 0 465 1 322 184 26 13 chr13 70106001 70106076 -31767093 + MER53 DNA DNA 7 82 -107 2482 132 104 106 chr13 70106076 70106744 -31766425 + MER4A LTR ERV1 1 872 0 473 154 96 10 chr13 70106750 70106854 -31766315 - MER53 DNA DNA -76 113 1 21 89 0 0 chr13 70106995 70107051 -31766118 + AT_rich Low_complexity Low_complexity 1 56 0 2219 63 0 7 chr13 70107579 70107892 -31765277 - AluY SINE Alu 0 313 3 213 196 0 0 chr13 70108183 70108229 -31764940 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 215 338 34 54 chr13 70109868 70110016 -31763153 + MIR3 SINE MIR 28 172 -36 27 29 0 0 chr13 70110623 70110657 -31762512 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 70110978 70111009 -31762160 + AT_rich Low_complexity Low_complexity 1 31 0 537 338 105 53 chr13 70112698 70113154 -31760015 + L2 LINE L2 2833 3312 -1 26 30 0 0 chr13 70113575 70113608 -31759561 + AT_rich Low_complexity Low_complexity 1 33 0 473 314 29 0 chr13 70113785 70113957 -31759212 - MER102a DNA MER1_type -5 325 149 191 409 58 7 chr13 70114166 70114303 -31758866 + L2 LINE L2 3102 3245 -27 377 221 50 24 chr13 70114531 70114631 -31758538 - MER20B DNA MER1_type -45 174 67 22 0 0 0 chr13 70114881 70114903 -31758266 + AT_rich Low_complexity Low_complexity 1 22 0 213 188 0 42 chr13 70115406 70115454 -31757715 + T-rich Low_complexity Low_complexity 5 50 0 2100 259 20 29 chr13 70115854 70116414 -31756755 + REP3 LTR ERV 1 555 -7 6038 74 1 4 chr13 70116784 70117566 -31755603 + LTR17 LTR ERV1 1 780 0 1976 160 0 3 chr13 70117755 70118061 -31755108 + AluSx SINE Alu 1 305 -7 1989 105 37 12 chr13 70118090 70118481 -31754688 - LTR7 LTR ERV1 -1 449 1 234 227 61 15 chr13 70118486 70118552 -31754617 - Charlie2b DNA MER1_type -1543 1239 1171 23 68 0 0 chr13 70118634 70118678 -31754491 + AT_rich Low_complexity Low_complexity 1 44 0 624 251 78 48 chr13 70118679 70119074 -31754095 + Charlie2b DNA MER1_type 2333 2739 -43 312 70 0 0 chr13 70119258 70119301 -31753868 + (CA)n Simple_repeat Simple_repeat 2 44 0 465 383 11 0 chr13 70119355 70119543 -31753626 + L2 LINE L2 2672 2861 -453 1553 185 18 0 chr13 70119559 70119840 -31753329 - MER7A DNA MER2_type 0 346 63 38 51 0 0 chr13 70119854 70119913 -31753256 + AT_rich Low_complexity Low_complexity 1 59 0 248 82 82 49 chr13 70119913 70120035 -31753134 + (TATAA)n Simple_repeat Simple_repeat 3 128 0 309 275 25 0 chr13 70120038 70120118 -31753051 - MER7A DNA MER2_type -266 80 1 1843 130 40 6 chr13 70120238 70120561 -31752608 - L1PB2 LINE L1 -2 6149 5816 325 351 26 0 chr13 70121268 70121382 -31751787 - MIR SINE MIR -56 206 90 2449 324 88 41 chr13 70123331 70124919 -31748250 + L2 LINE L2 43 1705 -1609 181 281 244 0 chr13 70124965 70125047 -31748122 + L2 LINE L2 1917 2018 -1296 1932 131 0 14 chr13 70125053 70125370 -31747799 - AluSx SINE Alu 0 313 1 275 307 0 11 chr13 70125604 70125692 -31747477 + GA-rich Low_complexity Low_complexity 1 87 0 1769 129 129 29 chr13 70125706 70126047 -31747122 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr13 70128716 70128745 -31744424 + AT_rich Low_complexity Low_complexity 1 29 0 1412 278 52 25 chr13 70129767 70130252 -31742917 - MLT1D LTR MaLR -7 498 1 184 222 0 0 chr13 70130634 70130670 -31742499 + L2 LINE L2 3267 3302 -11 22 0 0 0 chr13 70131044 70131066 -31742103 + AT_rich Low_complexity Low_complexity 1 22 0 1265 164 25 16 chr13 70131576 70131820 -31741349 + Tigger1 DNA MER2_type 1467 1712 -706 2080 130 51 25 chr13 70131823 70132178 -31740991 + THE1B LTR MaLR 1 364 0 * 4372 143 24 6 chr13 70132178 70132870 -31740299 + Tigger1 DNA MER2_type 1709 2413 -5 447 52 0 0 chr13 70133402 70133460 -31739709 + (TA)n Simple_repeat Simple_repeat 2 59 0 337 281 99 25 chr13 70134632 70134753 -31738416 + MIR SINE MIR 71 200 -62 38 39 0 0 chr13 70135022 70135074 -31738095 + AT_rich Low_complexity Low_complexity 1 52 0 1989 190 35 55 chr13 70135160 70135722 -31737447 + L1MA7 LINE L1 5743 6284 -7 487 218 64 19 chr13 70136177 70136333 -31736836 + MER96B DNA MER1_type? 18 180 -237 599 223 0 8 chr13 70136334 70136455 -31736714 + FLAM_C SINE Alu 3 122 -21 932 169 60 16 chr13 70136475 70136511 -31736658 + AluJo SINE Alu 85 118 -194 249 83 0 0 chr13 70136511 70136547 -31736622 + (TA)n Simple_repeat Simple_repeat 2 37 0 932 169 60 16 chr13 70136547 70136694 -31736475 + AluJo SINE Alu 118 276 -36 180 77 0 0 chr13 70136701 70136727 -31736442 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 201 39 0 0 chr13 70137392 70137418 -31735751 + (TG)n Simple_repeat Simple_repeat 2 27 0 305 287 23 0 chr13 70138213 70138300 -31734869 + CT-rich Low_complexity Low_complexity 1 89 0 24 32 0 0 chr13 70138415 70138446 -31734723 + AT_rich Low_complexity Low_complexity 1 31 0 2399 127 11 3 chr13 70138478 70138839 -31734330 + THE1B LTR MaLR 1 364 0 36 53 0 0 chr13 70138973 70139030 -31734139 + AT_rich Low_complexity Low_complexity 1 57 0 2076 237 26 46 chr13 70139232 70139773 -31733396 + L1MDa LINE L1 19 548 -5992 5037 162 17 8 chr13 70139803 70140679 -31732490 + MER4D LTR ERV1 1 884 -19 1984 248 82 25 chr13 70140726 70141422 -31731747 + L1MDa LINE L1 485 1539 -5001 278 299 93 0 chr13 70141713 70141820 -31731349 + L2 LINE L2 2909 3025 -247 291 307 90 38 chr13 70142278 70142490 -31730679 - MLT1J LTR MaLR -1 510 288 21 0 0 0 chr13 70143064 70143085 -31730084 + AT_rich Low_complexity Low_complexity 1 21 0 230 298 152 25 chr13 70143119 70143317 -31729852 - Charlie7 DNA MER1_type -2305 307 85 216 0 0 0 chr13 70144334 70144358 -31728811 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 23 54 0 0 chr13 70144388 70144425 -31728744 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr13 70145041 70145086 -31728083 + AT_rich Low_complexity Low_complexity 1 45 0 432 317 41 0 chr13 70145361 70145506 -31727663 - MIR SINE MIR -37 225 75 2464 53 3 3 chr13 70146562 70146866 -31726303 - AluY SINE Alu -7 304 1 327 256 186 41 chr13 70147534 70147693 -31725476 - MER5A DNA MER1_type 0 189 1 231 61 0 0 chr13 70147861 70147894 -31725275 + (TA)n Simple_repeat Simple_repeat 1 33 0 1319 223 138 10 chr13 70147944 70148357 -31724812 + MER31B LTR ERV1 1 466 0 26 50 0 0 chr13 70148982 70149022 -31724147 + AT_rich Low_complexity Low_complexity 1 40 0 404 259 0 0 chr13 70151053 70151138 -31722031 - L1PA13 LINE L1 -6352 435 351 253 313 68 99 chr13 70151185 70151600 -31721569 + MLT1J LTR MaLR 18 419 -92 202 250 96 29 chr13 70152072 70152176 -31720993 - MIR SINE MIR -56 206 96 523 225 0 0 chr13 70152377 70152466 -31720703 + L1PA13 LINE L1 208 296 -6491 189 0 0 0 chr13 70152499 70152520 -31720649 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 4499 266 48 3 chr13 70152945 70154016 -31719153 + L1PA13 LINE L1 314 1432 -5355 3744 19 1 0 chr13 70154017 70154599 -31718570 - L1P2 LINE L1 -463 5692 5110 1286 26 0 0 chr13 70154599 70154753 -31718416 + L1P LINE L1 3742 3895 -2251 328 333 19 9 chr13 70154871 70154979 -31718190 + L2 LINE L2 2939 3047 -225 526 305 26 7 chr13 70155114 70155268 -31717901 - MIR SINE MIR -47 215 59 23 33 0 0 chr13 70155975 70156005 -31717164 + AT_rich Low_complexity Low_complexity 1 30 0 256 341 23 23 chr13 70156290 70156378 -31716791 - L2 LINE L2 -1 3271 3184 579 328 57 24 chr13 70156912 70157244 -31715925 + MLT1I LTR MaLR 59 401 -8 572 98 22 0 chr13 70157318 70157410 -31715759 - L1MA3 LINE L1 0 6305 6212 944 184 102 2 chr13 70159303 70159683 -31713486 - LTR46 LTR ERV1 -1 459 1 880 329 79 9 chr13 70161883 70162199 -31710970 - MLT2E LTR ERVL -285 343 6 554 305 100 32 chr13 70162764 70163105 -31710064 + L2 LINE L2 1206 1569 -1745 421 359 94 0 chr13 70163229 70163452 -31709717 + L2 LINE L2 2414 2657 -657 1948 184 72 15 chr13 70163648 70164051 -31709118 - MSTB LTR MaLR 0 426 1 258 368 9 9 chr13 70164631 70164745 -31708424 + L2 LINE L2 3199 3312 -1 273 269 13 0 chr13 70165049 70165127 -31708042 - MIR SINE MIR -6 256 178 2135 161 64 17 chr13 70165326 70165735 -31707434 - MSTA LTR MaLR 0 428 1 2783 118 5 5 chr13 70168646 70169086 -31704083 + L1PB1 LINE L1 5709 6148 -3 2236 107 13 0 chr13 70169356 70169665 -31703504 - AluSq SINE Alu 0 313 1 23 33 0 0 chr13 70171436 70171466 -31701703 + AT_rich Low_complexity Low_complexity 1 30 0 3208 201 63 32 chr13 70171684 70172475 -31700694 - L1PA14 LINE L1 -2063 4083 3268 * 6309 186 12 8 chr13 70172472 70173833 -31699336 + L1PA14 LINE L1 4064 5426 -735 1227 120 0 0 chr13 70173834 70174001 -31699168 + AluSg SINE Alu 1 167 -143 2102 87 10 33 chr13 70174053 70174352 -31698817 + AluSx SINE Alu 1 292 -20 4658 130 15 1 chr13 70174352 70175083 -31698086 + L1PA14 LINE L1 5420 6160 -1 2099 210 100 32 chr13 70176615 70177272 -31695897 + L1MC3 LINE L1 6031 6645 -1140 8946 162 37 22 chr13 70177274 70178215 -31694954 - Tigger1 DNA MER2_type -658 1760 781 2356 87 0 3 chr13 70178215 70178514 -31694655 - AluSq SINE Alu -15 298 1 8946 162 37 22 chr13 70178514 70179306 -31693863 - Tigger1 DNA MER2_type -1637 781 2 22 94 0 0 chr13 70179416 70179480 -31693689 + AT_rich Low_complexity Low_complexity 1 64 0 1518 201 62 24 chr13 70179491 70179864 -31693305 - MLT1B LTR MaLR -2 388 2 330 43 0 0 chr13 70180306 70180353 -31692816 + AluY SINE Alu 254 300 0 541 250 17 0 chr13 70180439 70180555 -31692614 + MIR3 SINE MIR 57 174 -34 21 0 0 0 chr13 70180749 70180770 -31692399 + AT_rich Low_complexity Low_complexity 1 21 0 452 312 119 73 chr13 70181965 70182664 -31690505 + HAL1 LINE L1 937 1667 -840 27 29 0 0 chr13 70183090 70183124 -31690045 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr13 70183475 70183503 -31689666 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr13 70183533 70183563 -31689606 + (CA)n Simple_repeat Simple_repeat 2 31 0 639 131 8 74 chr13 70183862 70183984 -31689185 - THE1C LTR MaLR 0 375 262 1198 165 5 0 chr13 70184084 70184278 -31688891 + MSTB1 LTR MaLR 238 432 0 2180 118 0 0 chr13 70184450 70184754 -31688415 + AluSx SINE Alu 1 304 -8 37 0 0 0 chr13 70186815 70186852 -31686317 + AT_rich Low_complexity Low_complexity 1 37 0 2021 145 20 0 chr13 70186917 70187292 -31685877 - L1M2 LINE L1 -710 5602 5221 972 190 144 4 chr13 70187287 70187550 -31685619 + L1MA9 LINE L1 6010 6309 -3 * 21 0 0 0 chr13 70187821 70187842 -31685327 + AT_rich Low_complexity Low_complexity 1 21 0 278 302 74 101 chr13 70188108 70188366 -31684803 - MIR SINE MIR 0 262 12 461 304 41 26 chr13 70188911 70189105 -31684064 + MLT1I LTR MaLR 4 200 -209 2110 101 10 0 chr13 70189252 70189548 -31683621 - AluSx SINE Alu -13 299 1 314 348 0 0 chr13 70189629 70189741 -31683428 - L3 LINE CR1 -307 1270 1159 2105 133 0 0 chr13 70190818 70191118 -31682051 - AluSx SINE Alu -12 300 1 324 0 0 0 chr13 70191578 70191614 -31681555 + (TA)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr13 70191930 70191959 -31681210 + AT_rich Low_complexity Low_complexity 1 29 0 2393 60 0 0 chr13 70192583 70192881 -31680288 + AluY SINE Alu 2 299 -12 1934 250 77 26 chr13 70193240 70194156 -31679013 - L1MD3 LINE L1 -8 7987 6800 552 100 0 0 chr13 70194640 70194720 -31678449 + (TA)n Simple_repeat Simple_repeat 2 81 0 1842 151 0 11 chr13 70194720 70195005 -31678164 - AluSx SINE Alu -25 287 6 553 323 47 19 chr13 70196345 70196449 -31676720 + L1ME LINE L1 5446 5546 -575 1005 266 4 12 chr13 70196449 70196690 -31676479 + MER8 DNA MER2_type 1 239 0 553 323 47 19 chr13 70196690 70196947 -31676222 + L1ME LINE L1 5546 5817 -304 440 270 101 26 chr13 70197089 70197278 -31675891 + L2 LINE L2 3111 3313 0 342 0 0 0 chr13 70197815 70197853 -31675316 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 86 0 0 chr13 70199678 70199736 -31673433 + AT_rich Low_complexity Low_complexity 1 58 0 294 287 12 162 chr13 70200101 70200435 -31672734 - L2 LINE L2 0 3313 3030 1325 48 6 0 chr13 70200435 70200603 -31672566 + L1PA4 LINE L1 5984 6152 -3 480 214 43 8 chr13 70200635 70200752 -31672417 + L1M4 LINE L1 2647 2767 -3379 1467 324 97 24 chr13 70200759 70201586 -31671583 - L2 LINE L2 -277 3036 2143 180 77 0 0 chr13 70203773 70203799 -31669370 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1633 147 3 44 chr13 70204568 70204861 -31668308 + AluSg SINE Alu 1 281 -29 38 39 0 0 chr13 70405617 70405669 -31467500 + AT_rich Low_complexity Low_complexity 1 52 0 7871 153 20 30 chr13 70406312 70408588 -31464581 + HUERS-P1 LTR ERV1 3659 6263 0 2981 113 21 53 chr13 70408588 70409074 -31464095 + LTR8 LTR ERV1 1 470 -221 2678 93 5 9 chr13 70409182 70409572 -31463597 - MER57-int LTR ERV1 -2560 3386 3026 2919 139 118 27 chr13 70409574 70410127 -31463042 - MER57-int LTR ERV1 -4359 3178 2576 327 49 0 0 chr13 70410132 70410173 -31462996 + (TTTC)n Simple_repeat Simple_repeat 4 44 0 3141 127 56 6 chr13 70410173 70410693 -31462476 - MER57-int LTR ERV1 -4332 1931 1386 2225 124 13 43 chr13 70410693 70411065 -31462104 - THE1C LTR MaLR 0 375 15 2645 131 5 8 chr13 70411081 70411479 -31461690 - THE1C-int LTR MaLR 0 1580 1184 2158 163 106 77 chr13 70411580 70412176 -31460993 + MER4C-int LTR ERV1 5984 6596 -2 2935 92 67 2 chr13 70412186 70412622 -31460547 + MER4C LTR ERV1 1 464 -1 347 298 8 8 chr13 70412705 70412829 -31460340 - MLT1I LTR MaLR -228 181 58 363 23 0 0 chr13 70413565 70413609 -31459560 + (TG)n Simple_repeat Simple_repeat 2 45 0 1110 148 17 21 chr13 70414138 70414375 -31458794 - L1MA5 LINE L1 0 6300 6065 6863 151 45 51 chr13 70414754 70416294 -31456875 + MER4-int LTR ERV1 3750 5280 -1318 4773 53 7 2 chr13 70416297 70416881 -31456288 - LTR14C LTR ERVK 0 587 1 9244 67 5 5 chr13 70416881 70418078 -31455091 - HERVK14C LTR ERVK 0 7417 6221 318 119 0 0 chr13 70418178 70418220 -31454949 - Tigger2 DNA MER2_type -2676 42 1 416 294 101 52 chr13 70418222 70418508 -31454661 - MLT1I LTR MaLR -38 371 72 2488 71 0 0 chr13 70418681 70418990 -31454179 - AluY SINE Alu -2 309 1 4252 154 42 56 chr13 70419898 70421945 -31451224 + MER4-int LTR ERV1 1394 3648 -2950 764 212 34 0 chr13 70422046 70422192 -31450977 + Tigger2 DNA MER2_type 2568 2718 0 405 0 0 0 chr13 70422439 70422484 -31450685 + (TG)n Simple_repeat Simple_repeat 2 46 0 1313 182 33 8 chr13 70422484 70422726 -31450443 + MER2 DNA MER2_type 2 249 -96 249 285 150 87 chr13 70422744 70423183 -31449986 + L1MEd LINE L1 18 484 -5635 493 203 25 8 chr13 70423206 70423324 -31449845 - L1MA9 LINE L1 -34 6278 6159 305 230 38 43 chr13 70423844 70423968 -31449201 + L1MEd LINE L1 1183 1344 -4862 216 67 0 0 chr13 70424008 70424038 -31449131 + (CA)n Simple_repeat Simple_repeat 2 31 0 308 295 131 25 chr13 70424039 70424283 -31448886 + L1MEd LINE L1 1390 1659 -4651 482 336 126 87 chr13 70425443 70426308 -31446861 - L2 LINE L2 -660 2654 1824 1460 161 19 96 chr13 70426308 70426630 -31446539 - AluSx SINE Alu -10 302 6 482 336 126 87 chr13 70426630 70426740 -31446429 - L2 LINE L2 -1490 1824 1720 2455 61 3 0 chr13 70426740 70427035 -31446134 - AluY SINE Alu -15 296 1 482 336 126 87 chr13 70427035 70427921 -31445248 - L2 LINE L2 -1594 1720 720 2293 183 22 20 chr13 70427959 70428389 -31444780 - LOR1b LTR ERV1 0 461 28 2326 107 0 0 chr13 70428389 70428698 -31444471 + AluSg SINE Alu 1 309 -1 2293 183 22 20 chr13 70428698 70428727 -31444442 - LOR1b LTR ERV1 -433 28 1 25 65 0 0 chr13 70429580 70429626 -31443543 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr13 70429677 70429705 -31443464 + AT_rich Low_complexity Low_complexity 1 28 0 1220 303 50 82 chr13 70429848 70430404 -31442765 + L1MEc LINE L1 1707 2163 -4263 1546 197 37 0 chr13 70430404 70430698 -31442471 + AluJb SINE Alu 2 306 -6 1220 303 50 82 chr13 70430698 70430867 -31442302 + L1MEc LINE L1 2163 2336 -4090 1637 160 3 29 chr13 70430871 70431184 -31441985 + L1MA3 LINE L1 5974 6278 -27 2371 272 85 33 chr13 70431184 70431425 -31441744 + L1MEc LINE L1 2382 2609 -3817 1876 190 43 3 chr13 70431425 70431799 -31441370 - MLT1B LTR MaLR 0 390 2 2371 272 85 33 chr13 70431799 70432235 -31440934 + L1MEc LINE L1 2609 3021 -3405 2722 26 0 3 chr13 70432235 70432546 -31440623 + AluY SINE Alu 1 310 -1 2371 272 85 33 chr13 70432546 70433223 -31439946 + L1MEc LINE L1 3021 3767 -2659 2687 161 36 9 chr13 70433266 70433732 -31439437 - LTR12 LTR ERV1 -132 582 104 1429 66 0 0 chr13 70433846 70434029 -31439140 + AluY SINE Alu 119 301 -10 4337 138 28 33 chr13 70434297 70435086 -31438083 - LTR1 LTR ERV1 0 785 1 21 0 0 0 chr13 70436456 70436477 -31436692 + AT_rich Low_complexity Low_complexity 1 21 0 2544 125 3 0 chr13 70436691 70437052 -31436117 - THE1B LTR MaLR 0 364 3 364 305 57 72 chr13 70437482 70437800 -31435369 - MLT1H LTR MaLR -214 335 23 26905 71 1 4 chr13 70438630 70442089 -31431080 - HERVK14C LTR ERVK -1338 6079 2632 16443 88 6 3 chr13 70442095 70444290 -31428879 - HERVK14C LTR ERVK -5215 2202 3 264 122 0 0 chr13 70444292 70444333 -31428836 - LTR14C LTR ERVK -1 586 546 591 352 49 38 chr13 70444773 70445279 -31427890 + HERVL LTR ERVL 2124 2635 -3019 288 270 111 8 chr13 70446549 70446675 -31426494 - HERVL LTR ERVL -3622 2032 1894 23 0 0 0 chr13 70446857 70446880 -31426289 + AT_rich Low_complexity Low_complexity 1 23 0 3153 190 45 12 chr13 70447019 70447704 -31425465 + MER67C LTR ERV1 3 710 0 2283 74 0 27 chr13 70449486 70449785 -31423384 - AluSc SINE Alu -17 292 2 29 84 0 0 chr13 70450987 70451058 -31422111 + AT_rich Low_complexity Low_complexity 1 71 0 180 111 0 0 chr13 70451074 70451101 -31422068 + (CATA)n Simple_repeat Simple_repeat 3 29 0 252 336 83 36 chr13 70451264 70451541 -31421628 - L2 LINE L2 -2399 915 626 216 354 107 17 chr13 70451838 70452016 -31421153 - L3 LINE CR1 -130 1447 1254 183 385 0 0 chr13 70452316 70452394 -31420775 - L3 LINE CR1 -306 1271 1194 210 323 125 10 chr13 70452512 70452608 -31420561 - L3 LINE CR1 -530 1047 941 1132 210 4 17 chr13 70453282 70453520 -31419649 - L1PB4 LINE L1 -11 6145 5911 7205 159 42 27 chr13 70456090 70456242 -31416927 - HUERS-P1 LTR ERV1 -4869 1394 1246 279 0 0 0 chr13 70456242 70456273 -31416896 + (CA)n Simple_repeat Simple_repeat 2 32 0 7205 159 42 27 chr13 70456273 70457493 -31415676 - HUERS-P1 LTR ERV1 -5017 1246 1 977 149 27 0 chr13 70457493 70457641 -31415528 - LTR8 LTR ERV1 0 691 540 23 33 0 0 chr13 70458795 70458825 -31414344 + AT_rich Low_complexity Low_complexity 1 30 0 2250 83 0 10 chr13 70458890 70459192 -31413977 - AluSg SINE Alu -11 299 1 205 182 0 0 chr13 70459279 70459312 -31413857 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 186 43 0 0 chr13 70459399 70459422 -31413747 + (TAA)n Simple_repeat Simple_repeat 3 25 0 258 176 0 0 chr13 70459534 70459585 -31413584 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 22 0 0 0 chr13 70459607 70459629 -31413540 + AT_rich Low_complexity Low_complexity 1 22 0 363 295 112 48 chr13 70462545 70462645 -31410524 + L1MC/D LINE L1 5260 5352 -2690 195 42 0 0 chr13 70462645 70462669 -31410500 + (CA)n Simple_repeat Simple_repeat 2 25 0 363 295 112 48 chr13 70462669 70462880 -31410289 + L1MC/D LINE L1 5352 5591 -2451 1558 285 208 31 chr13 70463232 70464242 -31408927 - L2 LINE L2 -374 2940 1752 605 366 128 6 chr13 70464248 70464750 -31408419 - L2 LINE L2 -1832 1482 920 699 337 63 11 chr13 70464750 70465097 -31408072 - L2 LINE L2 -2742 572 208 22 0 0 0 chr13 70465440 70465462 -31407707 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 70465570 70465598 -31407571 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 70465767 70465810 -31407359 + AT_rich Low_complexity Low_complexity 1 43 0 25 83 0 0 chr13 70466127 70466187 -31406982 + AT_rich Low_complexity Low_complexity 1 60 0 184 301 68 14 chr13 70466575 70466648 -31406521 + MIR SINE MIR 160 236 -26 21 0 0 0 chr13 70466660 70466681 -31406488 + AT_rich Low_complexity Low_complexity 1 21 0 226 364 22 65 chr13 70467523 70467754 -31405415 - MLT1I LTR MaLR -89 320 100 237 33 0 0 chr13 70467888 70467918 -31405251 + (CA)n Simple_repeat Simple_repeat 1 30 0 180 0 0 0 chr13 70468786 70468806 -31404363 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1995 128 0 0 chr13 70468814 70469088 -31404081 - AluSx SINE Alu -38 274 1 268 286 62 18 chr13 70469091 70469203 -31403966 - L2 LINE L2 -7 3306 3190 547 289 175 23 chr13 70469303 70469611 -31403558 + L2 LINE L2 2954 3308 -5 984 318 27 25 chr13 70470287 70470652 -31402517 + MLT1E3 LTR MaLR 139 504 -120 290 253 0 13 chr13 70472051 70472126 -31401043 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 553 208 40 0 chr13 70472559 70472684 -31400485 - L1PA16 LINE L1 -16 6150 6021 412 302 131 1 chr13 70473019 70473225 -31399944 - L2 LINE L2 -304 3009 2780 333 68 0 0 chr13 70474336 70474380 -31398789 + (TG)n Simple_repeat Simple_repeat 1 44 0 22 70 0 0 chr13 70475700 70475743 -31397426 + AT_rich Low_complexity Low_complexity 1 43 0 214 169 14 14 chr13 70475921 70475992 -31397177 + (TA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chr13 70476143 70476164 -31397005 + AT_rich Low_complexity Low_complexity 1 21 0 256 299 130 33 chr13 70476532 70476716 -31396453 - MIR SINE MIR -33 229 28 180 0 0 0 chr13 70476991 70477011 -31396158 + (TA)n Simple_repeat Simple_repeat 1 20 0 242 209 0 30 chr13 70477072 70477139 -31396030 - L1MC4 LINE L1 -1337 6705 6641 254 45 91 0 chr13 70477472 70477516 -31395653 + L1P LINE L1 3233 3280 -2866 186 152 0 0 chr13 70478041 70478074 -31395095 + MIR SINE MIR 97 129 -133 34 55 0 0 chr13 70479068 70479123 -31394046 + AT_rich Low_complexity Low_complexity 1 55 0 191 364 0 57 chr13 70480009 70480097 -31393072 - L2 LINE L2 -2 3270 3188 351 317 92 46 chr13 70480308 70480548 -31392621 + MIR SINE MIR 1 251 -11 27 73 0 0 chr13 70481879 70481934 -31391235 + AT_rich Low_complexity Low_complexity 1 55 0 207 250 107 0 chr13 70481999 70482055 -31391114 - MIR SINE MIR -77 185 124 483 171 0 0 chr13 70482459 70482547 -31390622 - L1 LINE L1 -2106 4040 3953 * 2087 181 30 7 chr13 70482540 70482670 -31390499 + L1MA6 LINE L1 5159 5284 -1016 183 42 0 0 chr13 70482670 70482694 -31390475 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 2087 181 30 7 chr13 70482694 70483072 -31390097 + L1MA6 LINE L1 5284 5676 -624 1386 175 41 10 chr13 70483172 70483463 -31389706 + L1MA6 LINE L1 6001 6300 0 810 279 47 36 chr13 70483507 70483872 -31389297 - MLT1L LTR MaLR -239 376 8 281 330 57 19 chr13 70483967 70484073 -31389096 - MER91C DNA MER1_type -30 110 1 439 292 73 6 chr13 70484189 70484367 -31388802 - MIR SINE MIR -8 254 65 22 35 0 0 chr13 70484737 70484766 -31388403 + AT_rich Low_complexity Low_complexity 1 29 0 211 363 84 6 chr13 70484882 70485061 -31388108 + MIR SINE MIR 56 248 -14 362 198 47 35 chr13 70485084 70485170 -31387999 - Tigger7 DNA MER2_type 0 2487 2401 279 93 0 0 chr13 70485190 70485233 -31387936 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1211 198 36 75 chr13 70485244 70485522 -31387647 - Tigger7 DNA MER2_type -466 267 1 21 0 0 0 chr13 70485779 70485800 -31387369 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 70485882 70485910 -31387259 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 70486155 70486176 -31386993 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr13 70486889 70486939 -31386230 + AT_rich Low_complexity Low_complexity 1 50 0 1986 144 0 17 chr13 70486939 70487237 -31385932 - AluSx SINE Alu -14 298 6 338 236 28 0 chr13 70487242 70487314 -31385855 - MLT2D LTR ERVL -48 366 293 4526 179 66 18 chr13 70487316 70488070 -31385099 + L1MCa LINE L1 29 840 -5586 318 50 0 0 chr13 70488070 70488110 -31385059 + (CA)n Simple_repeat Simple_repeat 1 40 0 4526 179 66 18 chr13 70488110 70488306 -31384863 + L1MCa LINE L1 840 1025 -5401 251 175 18 0 chr13 70491505 70491562 -31381607 + (TA)n Simple_repeat Simple_repeat 1 58 0 1766 135 52 0 chr13 70491564 70491831 -31381338 - AluSx SINE Alu -26 286 6 472 204 0 0 chr13 70491935 70492033 -31381136 + AluSg/x SINE Alu 203 300 -9 301 304 152 22 chr13 70492045 70492229 -31380940 + L1MCa LINE L1 1223 1430 -5177 7182 46 9 0 chr13 70492234 70493257 -31379912 + L1PA7 LINE L1 5124 6154 0 657 282 53 61 chr13 70493266 70493511 -31379658 + MLT2F LTR ERVL 348 590 -73 25 51 0 0 chr13 70493961 70494000 -31379169 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr13 70495486 70495528 -31377641 + AT_rich Low_complexity Low_complexity 1 42 0 2246 73 0 3 chr13 70495551 70495839 -31377330 + AluY SINE Alu 10 296 -15 216 0 0 0 chr13 70496370 70496394 -31376775 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2032 106 0 14 chr13 70496396 70496678 -31376491 - AluSc SINE Alu -31 278 1 29 70 0 0 chr13 70497857 70497914 -31375255 + AT_rich Low_complexity Low_complexity 1 57 0 2141 104 4 0 chr13 70498717 70499019 -31374150 + AluSc SINE Alu 2 304 0 292 231 154 60 chr13 70499200 70499317 -31373852 + FLAM_C SINE Alu 5 132 -1 631 97 11 0 chr13 70499371 70499464 -31373705 - L1PA15 LINE L1 -202 5963 5870 1037 138 0 6 chr13 70499466 70499633 -31373536 + L1PA15 LINE L1 6000 6165 0 1180 171 19 0 chr13 70499634 70499845 -31373324 + L1MB3 LINE L1 5961 6175 -8 28 29 0 0 chr13 70500764 70500799 -31372370 + AT_rich Low_complexity Low_complexity 1 35 0 527 227 43 77 chr13 70500976 70501183 -31371986 - L1MB8 LINE L1 -3 6175 5976 1990 251 82 66 chr13 70501306 70502308 -31370861 - L1MEc LINE L1 -2930 4027 3014 2300 91 0 0 chr13 70502308 70502605 -31370564 - AluY SINE Alu -14 297 1 1990 251 82 66 chr13 70502605 70502747 -31370422 - L1MEc LINE L1 -3943 3014 2876 1152 281 73 76 chr13 70502810 70503909 -31369260 - L1MEc LINE L1 -4591 2368 1274 1686 299 64 36 chr13 70503909 70504470 -31368699 - L1MEc LINE L1 -6274 585 9 1018 217 26 0 chr13 70504649 70504879 -31368290 - MER46A DNA MER2_type 0 236 1 1603 140 10 67 chr13 70505051 70505365 -31367804 - AluSx SINE Alu -16 296 1 1690 174 0 14 chr13 70507949 70508231 -31364938 + AluJo SINE Alu 10 287 -25 200 333 0 0 chr13 70508270 70508321 -31364848 - L2 LINE L2 -12 3260 3210 21 36 0 0 chr13 70510608 70510636 -31362533 + AT_rich Low_complexity Low_complexity 1 28 0 2155 107 3 0 chr13 70510889 70511180 -31361989 - AluSg SINE Alu -18 292 1 2981 235 12 16 chr13 70511568 70512299 -31360870 - L1MB7 LINE L1 -8 6176 5449 4996 258 56 21 chr13 70512301 70512518 -31360651 - L1M4 LINE L1 -599 6073 5865 2271 73 3 22 chr13 70512518 70512835 -31360334 - AluY SINE Alu 0 311 1 4996 258 56 21 chr13 70512835 70514769 -31358400 - L1M4 LINE L1 -807 5865 3844 827 274 28 93 chr13 70514827 70515012 -31358157 - L1M4 LINE L1 -5794 748 553 1746 163 7 0 chr13 70515012 70515288 -31357881 - AluSx SINE Alu -24 288 11 827 274 28 93 chr13 70515288 70515533 -31357636 - L1M4 LINE L1 -5989 553 346 6130 159 9 9 chr13 70515553 70517482 -31355687 + L1PB1 LINE L1 4223 6147 -4 2158 196 48 40 chr13 70517722 70518227 -31354942 - MER52A LTR ERV1 0 1755 1247 690 253 172 24 chr13 70518275 70518674 -31354495 - MER52A LTR ERV1 -688 590 217 485 312 39 66 chr13 70518691 70519024 -31354145 - L1M4 LINE L1 -6197 345 22 431 182 29 168 chr13 70519336 70519448 -31353721 + MER31B LTR ERV1 6 77 -408 2545 112 2 18 chr13 70519448 70519842 -31353327 - L1PA11 LINE L1 -8 6166 5779 431 182 29 168 chr13 70519842 70519938 -31353231 + MER31B LTR ERV1 77 185 -300 396 285 65 45 chr13 70520062 70520262 -31352907 + L1M4 LINE L1 3981 4184 -1962 24 0 0 0 chr13 70520344 70520368 -31352801 + AT_rich Low_complexity Low_complexity 1 24 0 529 283 83 24 chr13 70520812 70521102 -31352067 + L1MB8 LINE L1 5871 6177 -1 1575 165 47 17 chr13 70521367 70521664 -31351505 - AluJo SINE Alu -6 306 1 5244 130 29 17 chr13 70523011 70523463 -31349706 + L1PA16 LINE L1 4876 5321 -845 2236 104 0 3 chr13 70523463 70523762 -31349407 + AluSc SINE Alu 1 298 -11 5244 130 29 17 chr13 70523762 70524580 -31348589 + L1PA16 LINE L1 5321 6157 -9 320 267 62 6 chr13 70524893 70525054 -31348115 + Charlie2 DNA MER1_type 2693 2862 0 613 182 28 35 chr13 70525156 70525299 -31347870 - L1M4 LINE L1 -571 5607 5466 330 293 9 19 chr13 70525297 70525403 -31347766 - L1M4 LINE L1 -6019 523 419 * 2050 118 53 31 chr13 70525945 70526301 -31346868 + THE1B LTR MaLR 1 364 0 228 274 14 0 chr13 70526620 70526693 -31346476 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 24 53 0 0 chr13 70528452 70528490 -31344679 + AT_rich Low_complexity Low_complexity 1 38 0 700 210 37 0 chr13 70528625 70528787 -31344382 - L1M3c LINE L1 -5015 1126 959 3675 202 51 15 chr13 70529229 70529469 -31343700 + L1MA9 LINE L1 4395 4625 -1666 1932 156 7 0 chr13 70529469 70529777 -31343392 + AluSx SINE Alu 3 312 0 3675 202 51 15 chr13 70529777 70530891 -31342278 + L1MA9 LINE L1 4625 5793 -498 1193 157 12 28 chr13 70531030 70531279 -31341890 + L1MA9 LINE L1 6068 6312 0 207 0 0 0 chr13 70532259 70532282 -31340887 + (TTG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr13 70532845 70532869 -31340300 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 70533815 70533836 -31339333 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr13 70534798 70534820 -31338349 + (T)n Simple_repeat Simple_repeat 1 22 0 697 207 0 0 chr13 70535290 70535411 -31337758 + FLAM_A SINE Alu 1 121 -12 1516 92 55 0 chr13 70535450 70535667 -31337502 - MER30 DNA MER1_type 0 230 2 797 313 160 66 chr13 70536552 70536756 -31336413 + L2 LINE L2 1587 1770 -1544 1732 223 21 45 chr13 70536756 70537227 -31335942 - MER74C LTR ERVL 0 460 1 797 313 160 66 chr13 70537227 70538294 -31334875 + L2 LINE L2 1770 2977 -337 975 287 64 80 chr13 70538400 70538845 -31334324 - MLT1E2 LTR MaLR 0 626 192 1860 94 19 0 chr13 70538845 70539112 -31334057 - L1PA13 LINE L1 -3 6160 5889 975 287 64 80 chr13 70539112 70539290 -31333879 - MLT1E2 LTR MaLR -434 192 13 261 98 0 0 chr13 70540235 70540276 -31332893 + (TG)n Simple_repeat Simple_repeat 1 41 0 28 61 0 0 chr13 70540299 70540348 -31332821 + AT_rich Low_complexity Low_complexity 1 49 0 720 277 50 36 chr13 70540886 70541164 -31332005 + L2 LINE L2 801 1082 -2232 270 333 0 0 chr13 70541157 70541244 -31331925 + L2 LINE L2 3182 3268 -4 * 239 318 34 47 chr13 70541293 70541441 -31331728 - MIR3 SINE MIR -49 159 14 1310 206 62 79 chr13 70543305 70543775 -31329394 - MLT2C2 LTR ERVL 0 464 3 2373 57 0 16 chr13 70544460 70544774 -31328395 - AluY SINE Alu -2 309 1 410 255 88 59 chr13 70545346 70545550 -31327619 + LTR50 LTR ERVL 7 216 -579 250 343 124 0 chr13 70545613 70545814 -31327355 + LTR50 LTR ERVL 446 671 -124 461 17 17 0 chr13 70546860 70546918 -31326251 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 234 0 0 0 chr13 70547394 70547420 -31325749 + (A)n Simple_repeat Simple_repeat 1 26 0 657 177 30 0 chr13 70548671 70548835 -31324334 + CT-rich Low_complexity Low_complexity 4 172 0 434 291 213 10 chr13 70548937 70549233 -31323936 - LTR50 LTR ERVL -26 769 414 316 230 70 20 chr13 70549437 70549537 -31323632 - LTR50 LTR ERVL -680 115 11 359 332 77 28 chr13 70550096 70550343 -31322826 - ERVL LTR ERVL -585 5179 4921 380 236 4 59 chr13 70550459 70550638 -31322531 + MLT1E2 LTR MaLR 59 200 -305 1380 256 23 46 chr13 70550668 70551101 -31322068 + MLT1E2 LTR MaLR 201 623 -3 404 339 106 17 chr13 70551119 70551712 -31321457 - ERVL LTR ERVL -719 4766 4123 1429 136 9 4 chr13 70551713 70551941 -31321228 + AluSg/x SINE Alu 75 303 -9 396 238 0 0 chr13 70551942 70552022 -31321147 - ERVL LTR ERVL -1630 4134 4055 748 339 64 32 chr13 70552031 70552137 -31321032 - ERVL LTR ERVL -1558 3927 3826 474 18 0 0 chr13 70552137 70552192 -31320977 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 748 339 64 32 chr13 70552192 70552708 -31320461 - ERVL LTR ERVL -1659 3826 3285 591 266 13 13 chr13 70553418 70553572 -31319597 - ERVL LTR ERVL -3304 2460 2307 261 254 28 14 chr13 70553588 70553659 -31319510 - ERVL LTR ERVL -4093 1561 1490 279 357 62 52 chr13 70554374 70554679 -31318490 - ERVL LTR ERVL -5076 688 381 271 289 95 47 chr13 70555176 70555244 -31317925 - LTR50 LTR ERVL -271 524 461 1934 147 3 6 chr13 70555244 70555556 -31317613 + AluJb SINE Alu 1 311 -1 271 289 95 47 chr13 70555556 70555677 -31317492 - LTR50 LTR ERVL -334 461 326 533 363 4 13 chr13 70556459 70556685 -31316484 + L1PA13 LINE L1 1 224 -6563 * 3254 176 26 9 chr13 70556684 70556992 -31316177 + L1PA16 LINE L1 4750 5051 -1115 1828 149 58 30 chr13 70556992 70557355 -31315814 - THE1C LTR MaLR 0 375 3 3254 176 26 9 chr13 70557355 70558069 -31315100 + L1PA16 LINE L1 5051 5791 -375 329 261 23 0 chr13 70558075 70558163 -31315006 - L1MC4 LINE L1 -1339 6703 6614 316 278 0 22 chr13 70558090 70558180 -31314989 + L1MC4 LINE L1 6615 6702 -1340 * 2017 169 25 0 chr13 70558191 70558557 -31314612 + L1PA16 LINE L1 5783 6157 -9 221 331 110 39 chr13 70558734 70558861 -31314308 + L2 LINE L2 3136 3271 -1 371 343 84 13 chr13 70559236 70559475 -31313694 + MIR SINE MIR 2 257 -5 243 341 8 24 chr13 70560064 70560187 -31312982 + MIR3 SINE MIR 41 161 -47 1767 244 33 9 chr13 70660531 70660985 -31212184 - MER82 DNA MER2_type 0 653 189 1021 278 41 28 chr13 70660988 70661424 -31211745 + LTR1 LTR ERV1 3 444 -341 1317 142 13 16 chr13 70661429 70661727 -31211442 - THE1B LTR MaLR 0 375 1 710 161 36 207 chr13 70661727 70662110 -31211059 + LTR1B LTR ERV1 441 757 -69 517 292 12 0 chr13 70662227 70662395 -31210774 - MER82 DNA MER2_type -469 184 15 1191 157 36 72 chr13 70663081 70663413 -31209756 - THE1C LTR MaLR 0 355 10 24 0 0 0 chr13 70663462 70663486 -31209683 + AT_rich Low_complexity Low_complexity 1 24 0 585 177 43 7 chr13 70663576 70663717 -31209452 + L1MB4 LINE L1 6035 6180 0 204 135 27 0 chr13 70664007 70664044 -31209125 + GA-rich Low_complexity Low_complexity 2 39 0 8749 205 12 8 chr13 70664201 70666209 -31206960 + L1P LINE L1 2434 4449 -1697 628 65 0 131 chr13 70666319 70666518 -31206651 - AluY SINE Alu -138 173 1 1794 132 36 7 chr13 70667529 70667810 -31205359 - AluSc SINE Alu -20 289 1 180 179 0 0 chr13 70668062 70668101 -31205068 + (TA)n Simple_repeat Simple_repeat 1 39 0 246 306 0 0 chr13 70668113 70668198 -31204971 + L1MC4 LINE L1 6614 6698 -1344 260 197 0 14 chr13 70668218 70668289 -31204880 + (TA)n Simple_repeat Simple_repeat 1 70 0 308 340 72 0 chr13 70668296 70668449 -31204720 + L1MEd LINE L1 987 1150 -4969 617 301 193 41 chr13 70718928 70719479 -31153690 + L2 LINE L2 2504 3141 -172 2181 97 13 13 chr13 70719493 70719623 -31153546 + AluSg SINE Alu 1 130 -180 207 0 0 0 chr13 70719623 70719646 -31153523 + (CA)n Simple_repeat Simple_repeat 2 24 0 2181 97 13 13 chr13 70719646 70719825 -31153344 + AluSg SINE Alu 129 310 0 1994 126 14 0 chr13 70719938 70720232 -31152937 + AluSq SINE Alu 1 298 -15 28 0 0 0 chr13 70720236 70720264 -31152905 + AT_rich Low_complexity Low_complexity 1 28 0 190 356 25 69 chr13 70720538 70720740 -31152429 + L2 LINE L2 2150 2342 -972 424 168 21 74 chr13 70721013 70721108 -31152061 + MER21B LTR ERV1 1 90 -773 773 296 107 10 chr13 70721131 70721439 -31151730 + MER21B LTR ERV1 19 356 -507 1282 137 0 0 chr13 70721550 70721740 -31151429 + THE1A LTR MaLR 166 355 0 2067 136 7 0 chr13 70721751 70722060 -31151109 + AluSq SINE Alu 1 311 -2 2548 87 29 19 chr13 70722063 70722441 -31150728 + THE1A-int LTR MaLR 1 382 -1198 4422 85 2 0 chr13 70722441 70723018 -31150151 + HERVL LTR ERVL 4580 5157 -497 1288 93 38 0 chr13 70723018 70723201 -31149968 + MLT2A1 LTR ERVL 186 375 -69 506 27 14 0 chr13 70723201 70723274 -31149895 + THE1A-int LTR MaLR 1507 1580 0 2087 98 89 9 chr13 70723274 70723601 -31149568 + THE1A LTR MaLR 1 353 -2 514 281 20 20 chr13 70723899 70724045 -31149124 - MLT1G1 LTR MaLR -2 593 448 643 258 148 36 chr13 70724162 70724519 -31148650 + L1ME1 LINE L1 5556 5952 -214 2355 120 24 90 chr13 70724642 70725110 -31148059 + HERVL18 LTR ERVL 4611 5047 -1000 500 114 76 0 chr13 70725110 70725189 -31147980 + LTR18A LTR ERVL 273 357 0 490 273 91 19 chr13 70726165 70726319 -31146850 - MER5B DNA MER1_type -7 171 7 23 54 0 0 chr13 70726684 70726721 -31146448 + AT_rich Low_complexity Low_complexity 1 37 0 1703 146 23 71 chr13 70728560 70728869 -31144300 + AluSx SINE Alu 1 294 -18 1669 163 124 45 chr13 70729707 70730087 -31143082 + MSTA LTR MaLR 19 428 0 8748 151 16 37 chr13 70730089 70731702 -31141467 + MSTA-int LTR MaLR 3 1580 0 1834 153 142 16 chr13 70731702 70732082 -31141087 + MSTA LTR MaLR 1 428 0 291 103 26 51 chr13 70732287 70732404 -31140765 + (TA)n Simple_repeat Simple_repeat 2 115 0 226 102 0 41 chr13 70734549 70734598 -31138571 + (TA)n Simple_repeat Simple_repeat 1 47 0 45 62 0 0 chr13 70735323 70735403 -31137766 + AT_rich Low_complexity Low_complexity 1 80 0 797 305 16 16 chr13 70735597 70735846 -31137323 - MIR SINE MIR -5 257 9 203 56 56 0 chr13 70736299 70736335 -31136834 + T-rich Low_complexity Low_complexity 2 39 0 2006 199 38 2 chr13 70736413 70736830 -31136339 - MSTB1 LTR MaLR 0 432 1 28 29 0 0 chr13 70737455 70737490 -31135679 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 70738144 70738172 -31134997 + AT_rich Low_complexity Low_complexity 1 28 0 8085 190 45 7 chr13 70738392 70740164 -31133005 + L1 LINE L1 3303 5140 -1006 397 331 51 24 chr13 70742083 70742494 -31130675 - L1MEc LINE L1 -4586 1810 1389 2299 57 0 0 chr13 70742575 70742883 -31130286 - AluY SINE Alu 0 308 1 409 233 134 42 chr13 70743001 70743284 -31129885 - L1MEc LINE L1 -5053 1152 844 24 0 0 0 chr13 70744540 70744564 -31128605 + AT_rich Low_complexity Low_complexity 1 24 0 748 264 14 18 chr13 70744735 70744955 -31128214 + LTR40b LTR ERVL 244 462 0 901 215 19 57 chr13 70745394 70745756 -31127413 - MER31B LTR ERV1 0 485 77 215 305 71 57 chr13 70745778 70745919 -31127250 - L2 LINE L2 -500 2814 2672 21 71 0 0 chr13 70746137 70746179 -31126990 + AT_rich Low_complexity Low_complexity 1 42 0 18299 161 27 16 chr13 70746349 70746645 -31126524 - L1PB1 LINE L1 0 6867 6576 1670 51 0 14 chr13 70746645 70746862 -31126307 + AluY SINE Alu 84 297 -14 18299 161 27 16 chr13 70746862 70746937 -31126232 - L1PB1 LINE L1 -291 6576 6503 261 98 0 0 chr13 70746937 70746978 -31126191 + (TG)n Simple_repeat Simple_repeat 2 42 0 18299 161 27 16 chr13 70746978 70750033 -31123136 - L1PB1 LINE L1 -364 6503 3483 2045 150 3 0 chr13 70750033 70750340 -31122829 - AluSx SINE Alu -4 308 1 18299 161 27 16 chr13 70750340 70753727 -31119442 - L1PB1 LINE L1 -3384 3483 1 543 56 0 0 chr13 70755466 70755593 -31117576 + (TG)n Simple_repeat Simple_repeat 1 198 0 543 56 0 0 chr13 70755593 70755664 -31117505 + (TG)n Simple_repeat Simple_repeat 2 72 0 2303 189 29 22 chr13 70755677 70756126 -31117043 - MER66A LTR ERV1 0 478 27 417 165 19 19 chr13 70757508 70757611 -31115558 + GA-rich Low_complexity Low_complexity 2 104 0 1525 209 85 29 chr13 70758504 70759133 -31114036 + MER39 LTR ERV1 1 702 -5 23 0 0 0 chr13 70760334 70760357 -31112812 + AT_rich Low_complexity Low_complexity 1 23 0 291 284 12 0 chr13 70761092 70761173 -31111996 + (CATATA)n Simple_repeat Simple_repeat 4 85 0 561 75 11 21 chr13 70762841 70762935 -31110234 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 21 0 0 0 chr13 70763031 70763052 -31110117 + AT_rich Low_complexity Low_complexity 1 21 0 1567 163 11 25 chr13 70763879 70763994 -31109175 - L1MB1 LINE L1 -246 5943 5828 1243 215 122 6 chr13 70763994 70764329 -31108840 - MLT1A2 LTR MaLR 0 374 1 1567 163 11 25 chr13 70764329 70764495 -31108674 - L1MB1 LINE L1 -361 5828 5666 752 218 34 11 chr13 70764492 70764671 -31108498 + L1MB1 LINE L1 5986 6168 0 * 213 406 16 8 chr13 70765115 70765243 -31107926 - L2 LINE L2 0 3272 3144 2465 68 0 3 chr13 70765245 70765556 -31107613 + AluY SINE Alu 1 310 -1 6765 57 11 4 chr13 70765646 70766656 -31106513 - L1PA7 LINE L1 0 6154 5132 4437 93 38 1 chr13 70766656 70767311 -31105858 + L1PA7 LINE L1 4443 5121 -1025 1991 132 7 0 chr13 70767312 70767601 -31105568 - AluSx SINE Alu -21 291 1 226 284 69 43 chr13 70767658 70767774 -31105395 - L2 LINE L2 -333 2980 2862 196 158 35 0 chr13 70768884 70768941 -31104228 + (TA)n Simple_repeat Simple_repeat 2 60 0 296 351 111 14 chr13 70770410 70770618 -31102551 - LTR33 LTR ERVL -2 519 292 298 320 56 16 chr13 70770713 70770838 -31102331 - LTR33 LTR ERVL -345 176 47 1032 63 0 0 chr13 70772104 70772246 -31100923 - L1P3 LINE L1 -712 5442 5301 21 0 0 0 chr13 70772403 70772424 -31100745 + AT_rich Low_complexity Low_complexity 1 21 0 1152 357 57 17 chr13 70773317 70774387 -31098782 - HERV16 LTR ERVL -2577 3077 2004 252 167 0 37 chr13 70774582 70774636 -31098533 - L1MA10 LINE L1 -10 6324 6273 503 224 0 88 chr13 70774750 70774897 -31098272 - L1MA10 LINE L1 -82 6252 6119 567 356 61 26 chr13 70774919 70775379 -31097790 - HERV16 LTR ERVL -3423 1573 1128 23 0 0 0 chr13 70776564 70776587 -31096582 + AT_rich Low_complexity Low_complexity 1 23 0 346 312 44 77 chr13 70776942 70777304 -31095865 - L1MEd LINE L1 -5048 1071 722 276 340 33 27 chr13 70777390 70777540 -31095629 - L2 LINE L2 -815 2499 2349 1493 202 7 3 chr13 70779738 70780040 -31093129 + AluJo SINE Alu 2 304 0 738 255 55 25 chr13 70780773 70781008 -31092161 - MIR SINE MIR -19 243 2 2063 118 0 0 chr13 70781524 70781828 -31091341 - AluSx SINE Alu 0 306 3 27 0 0 0 chr13 70782450 70782477 -31090692 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 70782515 70782540 -31090629 + AT_rich Low_complexity Low_complexity 1 25 0 1704 215 19 18 chr13 70782545 70783056 -31090113 - L1MC2 LINE L1 0 6344 5746 284 130 43 0 chr13 70783057 70783103 -31090066 - MLT2D LTR ERVL 0 414 367 509 147 22 73 chr13 70783159 70783295 -31089874 - MLT2B1 LTR ERVL -391 129 1 2698 235 100 17 chr13 70783296 70784740 -31088429 - L1MC2 LINE L1 -596 5748 4159 530 29 15 0 chr13 70784740 70784808 -31088361 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2698 235 100 17 chr13 70784808 70784862 -31088307 - L1MC2 LINE L1 -2185 4159 4111 1623 206 24 12 chr13 70785760 70786100 -31087069 - MER2 DNA MER2_type 0 344 1 292 333 43 22 chr13 70786815 70786953 -31086216 - MIR SINE MIR -85 177 37 200 86 29 0 chr13 70787208 70787243 -31085926 + (CCA)n Simple_repeat Simple_repeat 3 38 0 240 122 0 0 chr13 70789090 70789131 -31084038 + (TTG)n Simple_repeat Simple_repeat 2 42 0 223 318 9 84 chr13 70790302 70790409 -31082760 - MER5A DNA MER1_type -80 109 11 1913 228 90 27 chr13 70790723 70791310 -31081859 - MER45B DNA AcHobo -6 1034 411 543 214 0 0 chr13 70791361 70791464 -31081705 - AluJb SINE Alu -208 104 2 1343 244 102 13 chr13 70791472 70791845 -31081324 - MER45B DNA AcHobo -631 409 4 231 382 64 21 chr13 70791977 70792210 -31080959 - HAL1 LINE L1 -1884 623 381 31 44 0 0 chr13 70792467 70792512 -31080657 + AT_rich Low_complexity Low_complexity 1 45 0 2212 99 10 0 chr13 70792731 70793024 -31080145 + AluSq SINE Alu 1 296 -17 27 73 0 0 chr13 70793255 70793310 -31079859 + AT_rich Low_complexity Low_complexity 1 55 0 2178 94 7 0 chr13 70793365 70793651 -31079518 - AluSc SINE Alu -21 288 1 2067 117 4 0 chr13 70794767 70795177 -31077992 + AluSx SINE Alu 1 411 0 252 303 53 72 chr13 70797326 70797478 -31075691 + MIR SINE MIR 8 156 -106 22 0 0 0 chr13 70797797 70797819 -31075350 + AT_rich Low_complexity Low_complexity 1 22 0 1467 128 94 117 chr13 70797849 70797916 -31075253 - THE1C LTR MaLR 0 375 308 189 0 0 0 chr13 70797916 70797937 -31075232 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1467 128 94 117 chr13 70797937 70797957 -31075212 - THE1C LTR MaLR -67 308 289 1841 154 0 0 chr13 70797957 70798237 -31074932 - AluSx SINE Alu -32 280 1 1467 128 94 117 chr13 70798237 70798532 -31074637 - THE1C LTR MaLR -86 289 1 8223 134 74 37 chr13 70798532 70800055 -31073114 - THE1C-int LTR MaLR 0 1580 1 1350 123 45 29 chr13 70800055 70800299 -31072870 - THE1C LTR MaLR 0 375 128 196 29 0 57 chr13 70800343 70800378 -31072791 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1005 141 0 0 chr13 70800388 70800537 -31072632 - AluSg/x SINE Alu -29 283 135 32 43 0 0 chr13 70801003 70801049 -31072120 + AT_rich Low_complexity Low_complexity 1 46 0 864 247 55 5 chr13 70801084 70801296 -31071873 + LTR50 LTR ERVL 1 223 -572 527 294 123 58 chr13 70801296 70801782 -31071387 - MLT1H1 LTR MaLR 0 555 38 415 252 191 0 chr13 70801789 70801936 -31071233 + LTR50 LTR ERVL 431 605 -190 24 0 0 0 chr13 70802179 70802203 -31070966 + AT_rich Low_complexity Low_complexity 1 24 0 2392 77 0 0 chr13 70803534 70803832 -31069337 - AluSc SINE Alu -11 298 1 256 123 0 35 chr13 70803934 70803991 -31069178 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2807 10 0 0 chr13 70804075 70804384 -31068785 + AluYa5 SINE Alu 1 309 -2 836 37 0 9 chr13 70804427 70804535 -31068634 - L1PA5 LINE L1 -3 6151 6045 686 341 175 37 chr13 70805123 70806019 -31067150 - L2 LINE L2 -1178 2136 1117 607 215 2 48 chr13 70806513 70806750 -31066419 - L1MC3 LINE L1 -101 7841 7520 297 348 78 9 chr13 70806795 70806910 -31066259 + L2 LINE L2 3172 3294 -19 1469 188 41 3 chr13 70806968 70807308 -31065861 - L1MA7 LINE L1 -16 6275 5923 1912 146 143 8 chr13 70808352 70808729 -31064440 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr13 70808741 70808762 -31064407 + AT_rich Low_complexity Low_complexity 1 21 0 1083 220 155 60 chr13 70809247 70809666 -31063503 - MLT1C LTR MaLR 0 467 9 276 329 0 0 chr13 70809670 70809752 -31063417 + MIR SINE MIR 45 126 -136 1796 165 133 13 chr13 70810168 70810550 -31062619 - MSTA LTR MaLR 0 428 1 9160 153 8 37 chr13 70810550 70812141 -31061028 - MSTA-int LTR MaLR 0 1580 37 1618 184 117 50 chr13 70812157 70812321 -31060848 - MSTA LTR MaLR 0 428 276 2337 92 0 3 chr13 70812321 70812627 -31060542 - AluY SINE Alu -6 305 1 1618 184 117 50 chr13 70812627 70812863 -31060306 - MSTA LTR MaLR -152 276 1 24 77 0 0 chr13 70812956 70813008 -31060161 + AT_rich Low_complexity Low_complexity 1 52 0 331 262 158 16 chr13 70813359 70813542 -31059627 - LTR37B LTR ERV1 -8 460 252 4043 137 108 38 chr13 70813711 70814479 -31058690 - LTR12 LTR ERV1 0 826 5 1789 190 35 63 chr13 70814494 70815116 -31058053 - pTR5 LTR ERV1 -1093 1345 741 4372 178 47 9 chr13 70816702 70818241 -31054928 - L1MA8 LINE L1 -17 6274 4676 280 361 10 0 chr13 70818332 70818429 -31054740 + MER5A DNA MER1_type 12 109 -80 432 258 113 52 chr13 70818963 70819211 -31053958 + L1MDa LINE L1 2331 2593 -3947 2186 135 16 38 chr13 70821156 70821527 -31051642 - THE1B LTR MaLR -1 363 1 2899 142 27 4 chr13 70822061 70822547 -31050622 + LOR1a LTR ERV1 1 497 0 1104 256 52 54 chr13 70822804 70823264 -31049905 - MLT1C LTR MaLR -8 459 1 13895 148 23 6 chr13 70823359 70825735 -31047434 - Tigger1 DNA MER2_type 0 2418 1 2252 105 0 10 chr13 70825801 70826097 -31047072 - AluSc SINE Alu -15 294 2 1712 170 14 3 chr13 70826102 70826390 -31046779 - AluSx SINE Alu -21 291 1 22 0 0 0 chr13 70826824 70826846 -31046323 + AT_rich Low_complexity Low_complexity 1 22 0 380 245 26 0 chr13 70827601 70827752 -31045417 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 24 32 0 0 chr13 70828267 70828298 -31044871 + AT_rich Low_complexity Low_complexity 1 31 0 1954 128 3 41 chr13 70829014 70829333 -31043836 + AluSx SINE Alu 1 307 -5 230 270 66 92 chr13 70829476 70829628 -31043541 - L2 LINE L2 -5 3308 3161 970 225 122 44 chr13 70829786 70830172 -31042997 + LTR52 LTR ERVL 1 416 -5 424 274 57 51 chr13 70830354 70830501 -31042668 + LTR33 LTR ERVL 44 194 -327 4045 143 18 0 chr13 70830501 70831159 -31042010 - L1PA13 LINE L1 -6 6157 5488 245 214 29 97 chr13 70831162 70831200 -31041969 + LTR33 LTR ERVL 414 453 -68 * 2208 130 11 32 chr13 70831200 70831570 -31041599 - THE1B LTR MaLR -2 362 1 245 214 29 97 chr13 70831570 70831634 -31041535 + LTR33 LTR ERVL 453 509 -12 198 0 0 0 chr13 70831733 70831755 -31041414 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1860 88 0 0 chr13 70831757 70831997 -31041172 - AluSg SINE Alu -17 293 54 649 186 7 71 chr13 70834224 70834364 -31038805 - FLAM_C SINE Alu 0 133 3 23 42 0 21 chr13 70835756 70835770 -31037399 + AT_rich Low_complexity Low_complexity 1 14 -33 6823 54 10 1 chr13 70835770 70836926 -31036243 + L1PA7 LINE L1 4980 6143 -11 23 42 0 21 chr13 70836926 70836959 -31036210 + AT_rich Low_complexity Low_complexity 14 47 0 1193 180 75 27 chr13 70837606 70837901 -31035268 - L1MD3 LINE L1 -298 7697 7389 246 275 0 58 chr13 70837917 70837986 -31035183 - MLT1F1 LTR MaLR -461 106 42 1856 167 125 10 chr13 70837995 70838378 -31034791 - MSTA LTR MaLR -1 427 1 8834 160 20 38 chr13 70838378 70839928 -31033241 - MSTA-int LTR MaLR 0 1580 4 2183 132 19 19 chr13 70839928 70840292 -31032877 + THE1B LTR MaLR 1 364 0 10681 107 26 3 chr13 70840292 70841837 -31031332 + THE1B-int LTR MaLR 1 1580 0 2068 164 5 24 chr13 70841837 70842208 -31030961 + THE1B LTR MaLR 1 364 0 8834 160 20 38 chr13 70842208 70842261 -31030908 - MSTA-int LTR MaLR -1573 7 3 1730 164 148 16 chr13 70842263 70842641 -31030528 - MSTA LTR MaLR 0 428 1 183 260 40 20 chr13 70843098 70843148 -31030021 + L2 LINE L2 533 583 -2731 2016 188 37 34 chr13 70843536 70844084 -31029085 - MLT2A2 LTR ERVL 0 554 1 207 288 82 0 chr13 70844720 70844793 -31028376 + MIR SINE MIR 130 208 -54 21 57 0 0 chr13 70844922 70844957 -31028212 + AT_rich Low_complexity Low_complexity 1 35 0 1530 202 18 11 chr13 70845334 70845661 -31027508 - AluJb SINE Alu 0 329 1 257 67 0 22 chr13 70846096 70846141 -31027028 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2070 118 0 4 chr13 70846143 70846423 -31026746 - AluSx SINE Alu -33 279 1 2331 88 3 0 chr13 70847013 70847309 -31025860 - AluY SINE Alu -12 299 3 2970 185 24 18 chr13 70847938 70848607 -31024562 + L1MA3 LINE L1 5603 6275 -30 353 347 134 37 chr13 70850364 70850828 -31022341 - L2 LINE L2 -350 2964 2456 185 369 12 0 chr13 70850854 70850938 -31022231 - L2 LINE L2 -1058 2256 2172 736 295 160 51 chr13 70851093 70851785 -31021384 + L2 LINE L2 2375 3169 -144 2058 106 0 14 chr13 70851785 70851915 -31021254 + AluSg SINE Alu 1 131 -178 207 0 0 0 chr13 70851915 70851938 -31021231 + (CA)n Simple_repeat Simple_repeat 2 24 0 2058 106 0 14 chr13 70851938 70852120 -31021049 + AluSg SINE Alu 131 309 0 736 295 160 51 chr13 70852120 70852243 -31020926 + L2 LINE L2 3169 3277 -36 189 328 27 98 chr13 70852641 70852824 -31020345 - MER5B DNA MER1_type -5 173 4 244 200 0 0 chr13 70853327 70853382 -31019787 - L1MC4 LINE L1 -1336 6706 6652 2095 167 54 120 chr13 70853618 70854066 -31019103 - L1MA9 LINE L1 -51 6261 5862 1605 156 169 40 chr13 70854066 70854445 -31018724 - MSTA LTR MaLR 0 428 1 2095 167 54 120 chr13 70854445 70854606 -31018563 - L1MA9 LINE L1 -450 5862 5692 2025 172 109 0 chr13 70855221 70855605 -31017564 + MSTB LTR MaLR 1 426 0 8192 198 43 4 chr13 70855609 70857179 -31015990 + MSTB-int LTR MaLR 5 1635 -16 2281 179 26 12 chr13 70857193 70857613 -31015556 + MSTB LTR MaLR 1 426 0 25 51 0 0 chr13 70857929 70857968 -31015201 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr13 70858774 70858806 -31014363 + AT_rich Low_complexity Low_complexity 1 32 0 2801 135 56 76 chr13 70859874 70860465 -31012704 - LTR1 LTR ERV1 -206 579 1 1440 165 12 47 chr13 70860465 70860787 -31012382 - L1 LINE L1 -1548 4598 4288 869 204 43 45 chr13 70860777 70861043 -31012126 + L1MA9 LINE L1 5038 5303 -1009 * 273 29 0 0 chr13 70861043 70861077 -31012092 + (CA)n Simple_repeat Simple_repeat 2 35 0 869 204 43 45 chr13 70861077 70861341 -31011828 + L1MA9 LINE L1 5303 5738 -574 486 202 21 0 chr13 70861370 70861464 -31011705 + L1MA9 LINE L1 5986 6081 -231 550 193 18 0 chr13 70861466 70861575 -31011594 + L1MA9 LINE L1 6180 6290 -22 32 0 0 0 chr13 70861583 70861615 -31011554 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr13 70862605 70862632 -31010537 + (TG)n Simple_repeat Simple_repeat 1 27 0 1862 197 9 0 chr13 70863088 70863433 -31009736 - MER7A DNA MER2_type 0 346 1 23 54 0 0 chr13 70863445 70863482 -31009687 + AT_rich Low_complexity Low_complexity 1 37 0 2179 111 3 7 chr13 70863725 70864031 -31009138 + AluSq SINE Alu 1 305 -8 264 30 0 0 chr13 70864720 70864753 -31008416 + (CA)n Simple_repeat Simple_repeat 2 34 0 440 184 11 11 chr13 70864767 70864854 -31008315 + L1MCa LINE L1 20 106 -6320 4133 194 102 151 chr13 70864885 70866282 -31006887 + L1MC3 LINE L1 5760 7125 -660 249 206 59 69 chr13 70866282 70866384 -31006785 + MLT1F1 LTR MaLR 25 125 -442 4133 194 102 151 chr13 70866384 70867008 -31006161 + L1MC3 LINE L1 7125 7778 -7 558 239 7 14 chr13 70867437 70867575 -31005594 + FLAM_C SINE Alu 1 137 -6 464 158 21 42 chr13 70867589 70867684 -31005485 + AluJb SINE Alu 118 210 -102 999 38 52 0 chr13 70867699 70867909 -31005260 + (GGAA)n Simple_repeat Simple_repeat 1 220 0 23 54 0 0 chr13 70868035 70868072 -31005097 + AT_rich Low_complexity Low_complexity 1 37 0 1723 166 3 0 chr13 70868444 70868740 -31004429 - AluSx SINE Alu -5 307 11 261 339 42 0 chr13 70868746 70868864 -31004305 - MER5C DNA MER1_type -201 123 1 24 32 0 0 chr13 70868999 70869030 -31004139 + AT_rich Low_complexity Low_complexity 1 31 0 531 202 0 8 chr13 70870034 70870153 -31003016 + FLAM_A SINE Alu 24 141 -1 27 0 0 0 chr13 70870166 70870193 -31002976 + AT_rich Low_complexity Low_complexity 1 27 0 297 75 0 0 chr13 70870194 70870234 -31002935 + (TA)n Simple_repeat Simple_repeat 2 41 0 1692 162 10 29 chr13 70870388 70870528 -31002641 + AluJb SINE Alu 1 142 -170 288 0 0 0 chr13 70870528 70870560 -31002609 + (TA)n Simple_repeat Simple_repeat 2 33 0 1692 162 10 29 chr13 70870560 70870733 -31002436 + AluJb SINE Alu 142 308 -4 36 62 0 0 chr13 70871028 70871092 -31002077 + AT_rich Low_complexity Low_complexity 1 64 0 1406 266 92 27 chr13 70871410 70871966 -31001203 - MLT1E LTR MaLR 0 593 2 23 22 0 44 chr13 70872490 70872508 -31000661 + AT_rich Low_complexity Low_complexity 1 18 -25 2159 92 0 3 chr13 70872508 70872814 -31000355 + AluY SINE Alu 1 305 0 23 22 0 44 chr13 70872814 70872839 -31000330 + AT_rich Low_complexity Low_complexity 18 43 0 238 193 12 24 chr13 70872951 70873034 -31000135 + GA-rich Low_complexity Low_complexity 2 83 0 2274 77 0 0 chr13 70874149 70874434 -30998735 + AluSc SINE Alu 1 285 -24 222 191 63 0 chr13 70874638 70874701 -30998468 + T-rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr13 70874759 70874791 -30998378 + AT_rich Low_complexity Low_complexity 1 32 0 711 282 6 0 chr13 70875027 70875201 -30997968 + L1PA16 LINE L1 5971 6145 -21 551 98 24 0 chr13 70875223 70875305 -30997864 - MER2 DNA MER2_type -85 260 177 908 208 19 24 chr13 70875370 70875582 -30997587 - MER2 DNA MER2_type -134 211 1 1923 142 3 0 chr13 70876086 70876403 -30996766 + AluSx SINE Alu 1 318 0 227 236 0 56 chr13 70876629 70876718 -30996451 + T-rich Low_complexity Low_complexity 2 85 0 265 191 15 29 chr13 70878603 70878670 -30994499 - MLT1J LTR MaLR -158 353 288 447 204 44 18 chr13 70878670 70878783 -30994386 + MER4C LTR ERV1 1 116 -349 861 208 48 146 chr13 70878917 70879412 -30993757 + LTR34 LTR ERV1 249 695 -4 2295 120 16 27 chr13 70879511 70879879 -30993290 - THE1B LTR MaLR 0 364 1 452 293 27 27 chr13 70880487 70880675 -30992494 - MLT1J LTR MaLR -323 188 1 366 348 92 13 chr13 70880682 70880909 -30992260 + MIR SINE MIR 18 262 0 450 324 0 7 chr13 70881150 70881298 -30991871 - MIR SINE MIR -76 186 40 1075 236 68 7 chr13 70882644 70882937 -30990232 + MLT2C1 LTR ERVL 1 311 -86 251 211 0 14 chr13 70882965 70883036 -30990133 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 239 306 22 8 chr13 70883041 70883175 -30989994 + (TA)n Simple_repeat Simple_repeat 1 136 0 225 228 0 0 chr13 70883189 70883246 -30989923 - MLT2B1 LTR ERVL 0 520 464 449 184 14 21 chr13 70883300 70883441 -30989728 + (TATATG)n Simple_repeat Simple_repeat 4 143 0 413 289 42 0 chr13 70884134 70884276 -30988893 + MIR SINE MIR 107 254 -8 285 260 144 19 chr13 70884766 70884870 -30988299 + MLT1C LTR MaLR 1 117 -388 1409 212 0 7 chr13 70884882 70885160 -30988009 + AluJb SINE Alu 36 311 -1 760 219 87 92 chr13 70885192 70885539 -30987630 + MLT1C LTR MaLR 123 467 0 1803 151 122 65 chr13 70885608 70885777 -30987392 + MSTA LTR MaLR 1 159 -269 1576 183 11 18 chr13 70885777 70886087 -30987082 + AluJo SINE Alu 1 308 0 1803 151 122 65 chr13 70886087 70886275 -30986894 + MSTA LTR MaLR 159 387 -41 3654 182 43 61 chr13 70886275 70887246 -30985923 + LTR13 LTR ERVK 1 954 0 1803 151 122 65 chr13 70887246 70887289 -30985880 + MSTA LTR MaLR 387 426 -2 23 54 0 0 chr13 70888269 70888306 -30984863 + AT_rich Low_complexity Low_complexity 1 37 0 429 291 67 82 chr13 70888696 70889039 -30984130 - L2 LINE L2 0 3313 2976 458 193 70 18 chr13 70889047 70889161 -30984008 - L1MEc LINE L1 -4008 2388 2269 871 206 15 20 chr13 70889171 70889370 -30983799 + MER3 DNA MER1_type 12 209 0 277 264 0 0 chr13 70889371 70889477 -30983692 - L1MEc LINE L1 -4125 2271 2166 1808 150 18 3 chr13 70889507 70889793 -30983376 - AluSx SINE Alu -22 290 1 3113 39 8 0 chr13 70889803 70890184 -30982985 - L1PA5 LINE L1 -1 6153 5770 26 50 0 0 chr13 70890215 70890255 -30982914 + AT_rich Low_complexity Low_complexity 1 40 0 26 30 0 0 chr13 70890387 70890420 -30982749 + AT_rich Low_complexity Low_complexity 1 33 0 42372 33 22 1 chr13 70890623 70896640 -30976529 - L1PA2 LINE L1 0 6155 12 17743 46 84 2 chr13 70896650 70899448 -30973721 - L1PA5 LINE L1 -373 5781 2737 528 72 0 0 chr13 70899441 70899510 -30973659 + L1PA5 LINE L1 2686 2754 -3392 * 755 258 98 31 chr13 70899512 70899878 -30973291 - MER69B DNA AcHobo -1442 1084 689 219 69 0 0 chr13 70899878 70899907 -30973262 + (CA)n Simple_repeat Simple_repeat 2 30 0 755 258 98 31 chr13 70899907 70899928 -30973241 - MER69B DNA AcHobo -1837 689 671 804 196 47 65 chr13 70899980 70900194 -30972975 - AluJo SINE Alu -17 295 86 404 358 16 26 chr13 70900247 70900440 -30972729 - MER69B DNA AcHobo -649 577 387 625 251 17 29 chr13 70900502 70900677 -30972492 - MER69B DNA AcHobo -1035 191 19 423 256 128 35 chr13 70900709 70900912 -30972257 - LTR16A1 LTR ERVL 0 457 236 1438 205 61 24 chr13 70901046 70901456 -30971713 - L1MC3 LINE L1 -609 7176 6752 832 186 131 0 chr13 70901478 70901677 -30971492 + L1MC3 LINE L1 6494 6718 -1067 21 57 0 0 chr13 70901700 70901735 -30971434 + AT_rich Low_complexity Low_complexity 1 35 0 31 0 0 0 chr13 70902145 70902176 -30970993 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr13 70902269 70902305 -30970864 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr13 70902338 70902380 -30970789 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr13 70903086 70903107 -30970062 + AT_rich Low_complexity Low_complexity 1 21 0 1309 37 0 0 chr13 70903249 70903412 -30969757 - L1PA4 LINE L1 -5 6150 5988 24 32 0 0 chr13 70903894 70903925 -30969244 + AT_rich Low_complexity Low_complexity 1 31 0 513 125 0 0 chr13 70904032 70904112 -30969057 - MADE1 DNA Mariner 0 80 1 23 54 0 0 chr13 70904214 70904251 -30968918 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 70905019 70905042 -30968127 + AT_rich Low_complexity Low_complexity 1 23 0 1026 157 0 18 chr13 70905403 70905569 -30967600 - AluJ SINE Alu -20 292 130 758 151 0 43 chr13 70905606 70905745 -30967424 - AluJ SINE Alu -169 133 1 360 308 175 26 chr13 70905745 70906053 -30967116 - L2 LINE L2 -9 3304 2951 203 100 0 50 chr13 70906206 70906246 -30966923 + (CATA)n Simple_repeat Simple_repeat 2 39 0 210 318 35 0 chr13 70906247 70906332 -30966837 + (TA)n Simple_repeat Simple_repeat 1 88 0 573 338 39 0 chr13 70906599 70906833 -30966336 - MER46C DNA MER2_type 0 338 96 197 306 46 19 chr13 70906927 70907035 -30966134 - L2 LINE L2 -1645 1669 1559 902 264 128 86 chr13 70907064 70907374 -30965795 + Charlie2a DNA MER1_type 29 325 -2537 648 58 10 19 chr13 70907374 70907478 -30965691 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 902 264 128 86 chr13 70907478 70908550 -30964619 + Charlie2a DNA MER1_type 325 1469 -1393 776 157 11 73 chr13 70908552 70908743 -30964426 + LTR27 LTR ERV1 198 376 -260 1475 204 0 14 chr13 70908808 70909087 -30964082 + AluJb SINE Alu 1 275 -37 252 0 0 0 chr13 70909093 70909121 -30964048 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 1260 266 90 59 chr13 70909169 70910400 -30962769 + Charlie2a DNA MER1_type 1578 2846 -16 3234 209 76 29 chr13 70910436 70911265 -30961904 + LTR28 LTR ERV1 1 868 -152 290 177 62 106 chr13 70911366 70911479 -30961690 + LTR27 LTR ERV1 527 634 -2 24 53 0 0 chr13 70912412 70912450 -30960719 + AT_rich Low_complexity Low_complexity 1 38 0 245 335 92 18 chr13 70914373 70914591 -30958578 - HAL1 LINE L1 -650 1857 1624 2269 80 3 0 chr13 70914591 70914878 -30958291 + AluY SINE Alu 3 290 -21 10472 232 30 28 chr13 70914982 70916889 -30956280 - L1MB2 LINE L1 -2 6405 4503 240 111 0 0 chr13 70916889 70916925 -30956244 + (TTG)n Simple_repeat Simple_repeat 1 36 0 10472 232 30 28 chr13 70916925 70918573 -30954596 - L1MB2 LINE L1 -1904 4503 2820 1981 133 0 13 chr13 70918573 70918913 -30954256 - AluSg SINE Alu 0 310 1 10472 232 30 28 chr13 70918913 70919711 -30953458 - L1MB2 LINE L1 -3587 2820 2025 798 269 86 23 chr13 70919754 70919955 -30953214 - L1MB2 LINE L1 -4523 1861 1627 2153 86 3 30 chr13 70919955 70920257 -30952912 - AluSq SINE Alu -14 299 6 798 269 86 23 chr13 70920257 70920404 -30952765 - L1MB2 LINE L1 -4757 1627 1491 421 293 174 29 chr13 70920411 70920722 -30952447 - HAL1 LINE L1 -2049 458 103 26 30 0 0 chr13 70920722 70920755 -30952414 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr13 70921011 70921035 -30952134 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 357 89 54 0 chr13 70921038 70921094 -30952075 - MSTA LTR MaLR -21 407 349 3468 92 10 75 chr13 70921094 70921681 -30951488 - THE1C-int LTR MaLR -1031 549 1 1860 160 24 45 chr13 70921681 70922062 -30951107 - THE1C LTR MaLR 0 375 3 289 340 42 34 chr13 70923939 70924201 -30948968 + ERVL LTR ERVL 3684 3947 -1817 290 286 14 0 chr13 70924523 70924593 -30948576 - MIR SINE MIR -19 243 173 1229 251 49 25 chr13 70924607 70925013 -30948156 - LTR52 LTR ERVL -3 418 3 3149 241 24 31 chr13 70925016 70925944 -30947225 - LTR52-int LTR ERVL -1 3555 2400 258 122 0 0 chr13 70926373 70926414 -30946755 - L1MA9 LINE L1 -38 6274 6234 23 0 0 0 chr13 70926673 70926696 -30946473 + AT_rich Low_complexity Low_complexity 1 23 0 188 217 83 0 chr13 70928322 70928382 -30944787 + MIR SINE MIR 128 192 -70 253 167 0 0 chr13 70928393 70928441 -30944728 + LTR66 LTR ERVL 394 441 -169 662 180 16 0 chr13 70928479 70928601 -30944568 - MLT1A1 LTR MaLR -241 124 1 1954 147 0 3 chr13 70928754 70929054 -30944115 + AluSx SINE Alu 3 301 -11 10740 165 20 27 chr13 70929084 70931072 -30942097 + Tigger1 DNA MER2_type 1 1974 -444 1403 91 5 43 chr13 70931078 70931286 -30941883 + AluSq SINE Alu 5 204 -109 2966 231 50 26 chr13 70931395 70932625 -30940544 - L1MB5 LINE L1 -36 6138 4879 970 274 72 16 chr13 70932631 70932938 -30940231 + MLT1A1 LTR MaLR 5 328 -37 1998 248 31 55 chr13 70932956 70933767 -30939402 - L1MB5 LINE L1 -2032 4114 3324 23 0 0 0 chr13 70934484 70934507 -30938662 + AT_rich Low_complexity Low_complexity 1 23 0 1346 133 22 46 chr13 70936466 70936543 -30936626 + L1MA4 LINE L1 5606 5683 -617 1933 121 54 0 chr13 70936543 70936823 -30936346 + AluSg SINE Alu 1 295 -15 1346 133 22 46 chr13 70936823 70937329 -30935840 + L1MA4 LINE L1 5683 6297 -3 22 0 0 0 chr13 70937650 70937672 -30935497 + AT_rich Low_complexity Low_complexity 1 22 0 1989 154 18 125 chr13 70938015 70938309 -30934860 + MER66B LTR ERV1 1 212 -274 2204 121 0 0 chr13 70938309 70938622 -30934547 + AluSq SINE Alu 1 313 0 1989 154 18 125 chr13 70938622 70938871 -30934298 + MER66B LTR ERV1 212 486 0 24 53 0 0 chr13 70939089 70939127 -30934042 + AT_rich Low_complexity Low_complexity 1 38 0 4726 140 84 31 chr13 70939907 70940783 -30932386 + MER49 LTR ERV1 1 923 0 2188 97 0 29 chr13 70941527 70941836 -30931333 + AluSq SINE Alu 5 304 -9 2414 82 0 0 chr13 70941844 70942150 -30931019 + AluY SINE Alu 1 306 -5 412 129 0 0 chr13 70942150 70942212 -30930957 + (GGGA)n Simple_repeat Simple_repeat 3 64 0 23 0 0 0 chr13 70942221 70942244 -30930925 + AT_rich Low_complexity Low_complexity 1 23 0 2252 198 25 0 chr13 70942253 70942688 -30930481 + Tigger1 DNA MER2_type 1973 2418 0 2854 138 48 10 chr13 70943189 70943690 -30929479 - L1PA16 LINE L1 -9 6157 5638 2386 242 18 3 chr13 70943694 70944301 -30928868 - L1 LINE L1 -1624 4522 3907 279 0 0 0 chr13 70944894 70944925 -30928244 + (CA)n Simple_repeat Simple_repeat 2 32 0 2205 91 0 19 chr13 70944962 70945269 -30927900 + AluY SINE Alu 1 301 -10 3301 162 22 48 chr13 70945413 70945947 -30927222 + Tigger1 DNA MER2_type 1768 2314 -104 2251 65 0 0 chr13 70945947 70946225 -30926944 + AluY SINE Alu 1 278 -33 183 42 0 0 chr13 70946225 70946249 -30926920 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3301 162 22 48 chr13 70946249 70946381 -30926788 + Tigger1 DNA MER2_type 2312 2418 0 618 285 119 55 chr13 70946381 70946785 -30926384 - ERVL LTR ERVL -2553 2443 2014 517 327 25 43 chr13 70946794 70947047 -30926122 - ERVL LTR ERVL -3532 2232 1983 2060 135 127 16 chr13 70947047 70947432 -30925737 - MSTA LTR MaLR 0 428 1 517 327 25 43 chr13 70947432 70947456 -30925713 - ERVL LTR ERVL -3781 1983 1960 287 258 15 0 chr13 70947776 70947842 -30925327 - ERVL LTR ERVL -4135 1519 1453 23 0 0 0 chr13 70948047 70948070 -30925099 + AT_rich Low_complexity Low_complexity 1 23 0 1765 205 23 61 chr13 70949271 70949794 -30923375 - MLT1D LTR MaLR -2 503 1 213 108 0 0 chr13 70950249 70950286 -30922883 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 571 267 89 10 chr13 70953723 70953925 -30919244 - MIR SINE MIR -22 240 23 354 304 60 54 chr13 70955024 70955208 -30917961 + MLT1J LTR MaLR 69 253 -258 383 200 11 0 chr13 70955397 70955487 -30917682 - L1MA2 LINE L1 0 6304 6214 2082 122 0 3 chr13 70956359 70956668 -30916501 + AluSx SINE Alu 1 308 0 22 35 0 0 chr13 70956715 70956744 -30916425 + AT_rich Low_complexity Low_complexity 1 29 0 272 130 0 37 chr13 70956775 70956829 -30916340 + Alu SINE Alu 251 302 0 503 133 89 0 chr13 70956901 70956991 -30916178 + MER4A LTR ERV1 1 98 -566 1438 165 23 95 chr13 70956991 70957360 -30915809 + MER4A LTR ERV1 261 664 0 836 232 0 0 chr13 70957822 70958007 -30915162 + Charlie2a DNA MER1_type 1472 1656 -1206 338 181 60 0 chr13 70958031 70958114 -30915055 + Charlie2a DNA MER1_type 2716 2803 -59 37 23 0 0 chr13 70958770 70958814 -30914355 + AT_rich Low_complexity Low_complexity 1 44 0 461 184 0 0 chr13 70958829 70958905 -30914264 + L1P4 LINE L1 5719 5794 -372 * 725 258 9 64 chr13 70958879 70959193 -30913976 + L1MB8 LINE L1 5820 6124 -54 1935 145 3 10 chr13 70960187 70960490 -30912679 - AluSx SINE Alu -11 301 1 270 198 35 173 chr13 70960496 70960584 -30912585 - MER110A LTR ERV1 -234 234 188 2117 60 11 0 chr13 70960584 70960868 -30912301 + L1PA8 LINE L1 5886 6172 0 270 198 35 173 chr13 70960868 70960981 -30912188 - MER110A LTR ERV1 -280 188 61 198 71 0 0 chr13 70962052 70962080 -30911089 + (GGGTG)n Simple_repeat Simple_repeat 4 31 0 21 0 0 0 chr13 70962218 70962239 -30910930 + AT_rich Low_complexity Low_complexity 1 21 0 205 304 93 47 chr13 70962808 70962937 -30910232 + MIR SINE MIR 18 151 -63 29 84 0 0 chr13 70964303 70964374 -30908795 + AT_rich Low_complexity Low_complexity 1 71 0 2417 60 0 3 chr13 70965761 70966062 -30907107 + AluY SINE Alu 1 300 -11 30 27 0 0 chr13 70966089 70966126 -30907043 + AT_rich Low_complexity Low_complexity 1 37 0 2181 88 23 3 chr13 70966258 70966563 -30906606 + AluSx SINE Alu 2 312 0 1994 126 14 0 chr13 70966677 70966971 -30906198 + AluSq SINE Alu 1 298 -15 28 0 0 0 chr13 70966975 70967003 -30906166 + AT_rich Low_complexity Low_complexity 1 28 0 190 356 25 69 chr13 70967277 70967479 -30905690 + L2 LINE L2 2150 2342 -972 424 168 21 74 chr13 70967752 70967847 -30905322 + MER21B LTR ERV1 1 90 -773 2544 245 65 21 chr13 70967870 70968577 -30904592 + MER21B LTR ERV1 19 756 -107 1533 187 55 3 chr13 70968962 70969288 -30903881 - MER2 DNA MER2_type -1 343 1 487 302 31 36 chr13 70969587 70969809 -30903360 - MER58A DNA MER1_type 0 224 4 2443 67 0 6 chr13 70969868 70970181 -30902988 - AluY SINE Alu 0 311 1 194 309 18 0 chr13 70970303 70970358 -30902811 + MIR SINE MIR 30 85 -177 30 69 0 0 chr13 70971563 70971621 -30901548 + AT_rich Low_complexity Low_complexity 1 58 0 1731 176 3 13 chr13 70971892 70972198 -30900971 + AluJb SINE Alu 1 303 -9 234 318 57 0 chr13 70972491 70972579 -30900590 - L3 LINE CR1 -1009 568 476 31 82 0 0 chr13 70972952 70973025 -30900144 + AT_rich Low_complexity Low_complexity 1 73 0 1933 158 99 8 chr13 70974189 70974581 -30898588 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr13 70974603 70974639 -30898530 + AT_rich Low_complexity Low_complexity 1 36 0 520 278 46 7 chr13 70975280 70975431 -30897738 + MIR SINE MIR 42 198 -64 336 276 52 9 chr13 70975487 70975603 -30897566 - MIR SINE MIR -70 192 72 676 207 0 0 chr13 70975612 70975733 -30897436 + FLAM_A SINE Alu 2 122 -11 1867 184 33 26 chr13 70976128 70976552 -30896617 - L1MA6 LINE L1 0 6300 5874 24 0 0 0 chr13 70976681 70976705 -30896464 + AT_rich Low_complexity Low_complexity 1 24 0 220 177 33 0 chr13 70976710 70976764 -30896405 + MIR SINE MIR 97 152 -62 22 35 0 0 chr13 70976802 70976831 -30896338 + AT_rich Low_complexity Low_complexity 1 29 0 2000 138 0 3 chr13 70976905 70977210 -30895959 + AluSc SINE Alu 1 304 -5 2308 117 6 14 chr13 70977677 70978035 -30895134 + THE1A LTR MaLR 1 355 0 2281 104 7 0 chr13 70978046 70978354 -30894815 + AluSq SINE Alu 1 310 -3 1658 136 39 4 chr13 70978358 70978637 -30894532 + THE1A-int LTR MaLR 1 289 -1291 1138 237 43 51 chr13 70979707 70980100 -30893069 + MLT1B LTR MaLR 1 390 0 521 204 45 62 chr13 70980291 70980467 -30892702 + L1MA9 LINE L1 4120 4292 -1854 1460 159 89 45 chr13 70980472 70980831 -30892338 - THE1C LTR MaLR 0 375 1 8816 137 59 21 chr13 70980831 70982350 -30890819 - THE1C-int LTR MaLR 0 1580 4 1589 182 78 31 chr13 70982353 70982711 -30890458 - THE1C LTR MaLR 0 375 1 4284 209 37 18 chr13 70982718 70984546 -30888623 + L1MA9 LINE L1 4300 6169 -143 423 0 0 0 chr13 70984546 70984593 -30888576 + (CA)n Simple_repeat Simple_repeat 1 47 0 4284 209 37 18 chr13 70984593 70984697 -30888472 + L1MA9 LINE L1 6169 6270 -42 21 0 0 0 chr13 70984697 70984718 -30888451 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 70985783 70985819 -30887350 + AT_rich Low_complexity Low_complexity 1 36 0 427 187 47 38 chr13 70985833 70985967 -30887202 - L1ME LINE L1 -373 5789 5652 919 123 52 7 chr13 70988247 70988402 -30884767 + MSTA LTR MaLR 267 428 0 7589 189 30 5 chr13 70988403 70989816 -30883353 + MSTA-int LTR MaLR 2 1450 -201 4361 250 41 15 chr13 70989819 70991321 -30881848 + L1MB7 LINE L1 3878 5600 -566 868 296 62 0 chr13 70991325 70991616 -30881553 + L1MB7 LINE L1 5814 6122 -62 24 67 0 0 chr13 70991622 70991667 -30881502 + AT_rich Low_complexity Low_complexity 1 45 0 2492 161 106 7 chr13 70991971 70992423 -30880746 + LOR1a LTR ERV1 1 497 0 301 268 196 34 chr13 70992515 70992806 -30880363 + L1MEd LINE L1 779 1116 -5003 180 0 0 0 chr13 70993218 70993238 -30879931 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2886 207 56 78 chr13 70993367 70994220 -30878949 + L1MB4 LINE L1 5178 6036 -144 924 225 147 51 chr13 70994220 70994553 -30878616 - MLT1A1 LTR MaLR 0 365 1 2886 207 56 78 chr13 70994553 70994695 -30878474 + L1MB4 LINE L1 6036 6180 0 27 73 0 0 chr13 70994865 70994920 -30878249 + AT_rich Low_complexity Low_complexity 1 55 0 2141 89 3 0 chr13 70995214 70995520 -30877649 - AluY SINE Alu 0 307 1 3679 165 14 40 chr13 70995779 70996585 -30876584 - LTR1 LTR ERV1 0 785 1 249 296 0 12 chr13 70996675 70996756 -30876413 - MLT1L LTR MaLR -373 242 163 1360 354 66 10 chr13 70998145 70998928 -30874241 - HERV16 LTR ERVL -3807 1189 363 750 310 105 4 chr13 70999150 70999408 -30873761 - LTR16A LTR ERVL 0 450 167 555 167 20 0 chr13 71000005 71000107 -30873062 + FLAM_C SINE Alu 1 104 -39 3670 163 78 6 chr13 71000267 71000993 -30872176 - Tigger3(Golem) DNA MER2_type -11 3018 2240 528 224 47 0 chr13 71000991 71001098 -30872071 - Tigger3(Golem) DNA MER2_type -2917 112 1 * 1516 200 87 22 chr13 71002250 71002620 -30870549 - MSTD LTR MaLR 0 396 3 5196 275 42 37 chr13 71002622 71004348 -30868821 - MSTD-int LTR MaLR 0 1735 2 1372 238 19 87 chr13 71004350 71004775 -30868394 - MSTD LTR MaLR 0 396 1 964 331 99 49 chr13 71004779 71005258 -30867911 + L2 LINE L2 2103 2648 -665 1848 129 0 0 chr13 71005258 71005522 -30867647 - AluSq SINE Alu -12 301 38 964 331 99 49 chr13 71005522 71005875 -30867294 + L2 LINE L2 2648 2982 -331 499 247 69 6 chr13 71005941 71006115 -30867054 - ORSL DNA AcHobo -12 263 79 312 326 36 43 chr13 71006338 71006476 -30866693 + L2 LINE L2 3177 3313 0 1084 156 0 67 chr13 71007577 71007815 -30865354 + L1MA9 LINE L1 6091 6312 0 230 234 0 0 chr13 71008493 71008540 -30864629 + CT-rich Low_complexity Low_complexity 2 48 0 3005 150 64 0 chr13 71008711 71009271 -30863898 + L1MA6 LINE L1 5705 6300 0 847 188 53 24 chr13 71009941 71010149 -30863020 + MER20 DNA MER1_type 2 215 -4 29 106 0 0 chr13 71010332 71010445 -30862724 + AT_rich Low_complexity Low_complexity 1 113 0 25 51 0 0 chr13 71010539 71010578 -30862591 + AT_rich Low_complexity Low_complexity 1 39 0 2060 121 10 0 chr13 71010621 71010911 -30862258 - AluSx SINE Alu -15 297 5 21 0 0 0 chr13 71011413 71011434 -30861735 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 71011563 71011584 -30861585 + AT_rich Low_complexity Low_complexity 1 21 0 239 133 22 0 chr13 71013418 71013463 -30859706 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 213 159 0 0 chr13 71013561 71013605 -30859564 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 245 75 0 chr13 71014315 71014368 -30858801 + MER5B DNA MER1_type 8 64 -114 291 166 72 7 chr13 71014375 71014514 -30858655 + (TA)n Simple_repeat Simple_repeat 2 149 0 2008 130 0 34 chr13 71015365 71015687 -30857482 + AluSx SINE Alu 2 312 0 2454 58 0 3 chr13 71016545 71016855 -30856314 + AluY SINE Alu 1 309 -2 569 261 32 0 chr13 71016886 71017043 -30856126 + MER97b DNA MER1_type? 1 162 -891 235 270 175 36 chr13 71017644 71017781 -30855388 - MIR SINE MIR -50 212 57 828 112 26 0 chr13 71019136 71019252 -30853917 - AluSg SINE Alu -191 119 1 1917 145 10 0 chr13 71020487 71020783 -30852386 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr13 71020920 71020941 -30852228 + AT_rich Low_complexity Low_complexity 1 21 0 462 18 0 0 chr13 71021045 71021100 -30852069 + (CA)n Simple_repeat Simple_repeat 2 56 0 363 310 99 62 chr13 71021101 71021617 -30851552 - L1M4 LINE L1 -1538 4608 4074 653 99 0 0 chr13 71022195 71022286 -30850883 - AluSg SINE Alu -219 91 1 2250 71 0 0 chr13 71022296 71022600 -30850569 - AluY SINE Alu 0 304 1 1433 226 34 14 chr13 71022812 71023170 -30849999 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr13 71023301 71023330 -30849839 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 71023778 71023799 -30849370 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr13 71025208 71025257 -30847912 + AT_rich Low_complexity Low_complexity 1 49 0 871 314 32 21 chr13 71025556 71025894 -30847275 - MLT1H1 LTR MaLR -27 528 187 2265 120 43 6 chr13 71026551 71026902 -30846267 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr13 71027260 71027286 -30845883 + AT_rich Low_complexity Low_complexity 1 26 0 2061 91 0 37 chr13 71028367 71028688 -30844481 - AluSp SINE Alu 0 311 2 283 269 261 37 chr13 71030585 71030830 -30842339 + LTR33 LTR ERVL 196 495 -26 305 279 0 0 chr13 71031809 71031888 -30841281 + HERV16 LTR ERVL 1108 1186 -3810 3101 143 30 12 chr13 71031919 71032491 -30840678 - L1MA4 LINE L1 -1 6299 5718 2002 264 18 56 chr13 71032491 71033714 -30839455 - L1MCa LINE L1 -4940 967 6 25 0 0 0 chr13 71033755 71033780 -30839389 + AT_rich Low_complexity Low_complexity 1 25 0 41 104 0 0 chr13 71034309 71034386 -30838783 + AT_rich Low_complexity Low_complexity 1 77 0 25 31 0 0 chr13 71035183 71035215 -30837954 + AT_rich Low_complexity Low_complexity 1 32 0 4535 180 40 13 chr13 71036266 71036801 -30836368 + L1MA4 LINE L1 5341 5913 -387 1836 155 142 16 chr13 71036801 71037181 -30835988 + MSTA LTR MaLR 1 428 0 4535 180 40 13 chr13 71037181 71037574 -30835595 + L1MA4 LINE L1 5913 6294 -6 185 406 18 18 chr13 71038207 71038372 -30834797 - MIR3 SINE MIR -25 183 19 268 221 29 0 chr13 71039692 71039760 -30833409 - MIR SINE MIR -71 191 122 25 65 0 0 chr13 71039942 71039988 -30833181 + AT_rich Low_complexity Low_complexity 1 46 0 182 37 37 0 chr13 71040186 71040213 -30832956 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1646 195 0 3 chr13 71040219 71040506 -30832663 - AluJb SINE Alu -26 286 1 29 0 0 0 chr13 71040796 71040825 -30832344 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr13 71041060 71041086 -30832083 + AT_rich Low_complexity Low_complexity 1 26 0 252 0 0 0 chr13 71042656 71042684 -30830485 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 234 240 64 64 chr13 71043238 71043363 -30829806 + L1MCc LINE L1 818 942 -5481 275 129 24 188 chr13 71043363 71043448 -30829721 + FAM SINE Alu 88 158 -17 1124 231 37 75 chr13 71043569 71043910 -30829259 + L1MCc LINE L1 1055 1407 -5317 2050 196 35 22 chr13 71043910 71044365 -30828804 + LOR1b LTR ERV1 1 461 0 1124 231 37 75 chr13 71044365 71044682 -30828487 + L1MCc LINE L1 1407 1876 -4848 293 286 24 24 chr13 71044744 71044870 -30828299 + L1ME LINE L1 5737 5862 -300 3770 189 21 29 chr13 71044877 71045737 -30827432 + L1MA7 LINE L1 5433 6285 -6 23 0 0 0 chr13 71045774 71045797 -30827372 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr13 71045845 71045874 -30827295 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 71047006 71047029 -30826140 + AT_rich Low_complexity Low_complexity 1 23 0 1402 217 24 101 chr13 71047401 71047895 -30825274 + L1MA3 LINE L1 5840 6295 -10 230 141 156 0 chr13 71047919 71047983 -30825186 + L1MA4 LINE L1 6221 6294 -6 25 31 0 0 chr13 71048551 71048583 -30824586 + AT_rich Low_complexity Low_complexity 1 32 0 302 296 39 74 chr13 71048910 71049140 -30824029 - MLT1J LTR MaLR -58 453 232 191 35 0 35 chr13 71049888 71049917 -30823252 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1928 117 0 4 chr13 71050006 71050279 -30822890 - AluSx SINE Alu -18 294 23 180 0 0 0 chr13 71050846 71050866 -30822303 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 68 0 0 chr13 71051279 71051323 -30821846 + AT_rich Low_complexity Low_complexity 1 44 0 2792 117 16 0 chr13 71052585 71053117 -30820052 - L1M1 LINE L1 -620 5683 5146 2995 138 53 4 chr13 71053117 71053665 -30819504 + L1MA4A LINE L1 5719 6296 -7 30 83 0 0 chr13 71053691 71053763 -30819406 + AT_rich Low_complexity Low_complexity 1 72 0 28 48 0 0 chr13 71053846 71053888 -30819281 + AT_rich Low_complexity Low_complexity 1 42 0 228 317 89 20 chr13 71053906 71054007 -30819162 + L2 LINE L2 3197 3304 -9 438 230 8 10 chr13 71054065 71054193 -30818976 - L1ME LINE L1 -323 5798 5672 27 49 0 0 chr13 71055948 71055989 -30817180 + AT_rich Low_complexity Low_complexity 1 41 0 180 77 0 0 chr13 71056580 71056606 -30816563 + (TC)n Simple_repeat Simple_repeat 1 26 0 285 29 0 0 chr13 71056606 71056640 -30816529 + (TA)n Simple_repeat Simple_repeat 1 34 0 7654 27 0 0 chr13 71056813 71057875 -30815294 + L1PA4 LINE L1 5093 6155 0 1223 285 108 38 chr13 71058128 71058682 -30814487 + MLT1E LTR MaLR 1 593 0 250 339 35 35 chr13 71058705 71058820 -30814349 - L2 LINE L2 0 3272 3158 22 0 0 0 chr13 71058950 71058972 -30814197 + AT_rich Low_complexity Low_complexity 1 22 0 1389 220 0 20 chr13 71058972 71059276 -30813893 - AluJo SINE Alu -14 298 1 270 0 0 0 chr13 71059279 71059309 -30813860 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 471 233 68 7 chr13 71059614 71059760 -30813409 - L1MC4 LINE L1 -787 7255 7101 30 59 0 0 chr13 71059991 71060042 -30813127 + AT_rich Low_complexity Low_complexity 1 51 0 332 281 41 27 chr13 71060168 71060314 -30812855 - L1MC4a LINE L1 -1045 6763 6616 23 0 0 0 chr13 71060859 71060882 -30812287 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr13 71061031 71061074 -30812095 + AT_rich Low_complexity Low_complexity 1 43 0 2262 113 3 0 chr13 71061102 71061411 -30811758 - AluSq SINE Alu -3 310 1 926 190 56 30 chr13 71061531 71061763 -30811406 - L1MB7 LINE L1 -6 6178 5941 2809 172 16 24 chr13 71062108 71062306 -30810863 - L1MA6 LINE L1 -10 6290 6092 1704 175 21 29 chr13 71062306 71062684 -30810485 + THE1C LTR MaLR 1 375 0 2809 172 16 24 chr13 71062684 71063067 -30810102 - L1MA6 LINE L1 -208 6092 5714 302 215 21 3 chr13 71063494 71063582 -30809587 + HsTC2 DNA Tc2 29 1836 -62 2383 133 19 0 chr13 71063686 71064054 -30809115 + THE1C LTR MaLR 1 375 0 350 274 18 41 chr13 71064461 71064680 -30808489 + L1MB8 LINE L1 5789 6002 -176 * 1296 167 37 0 chr13 71064515 71064760 -30808409 + L1MC1 LINE L1 5836 6089 -244 362 98 0 0 chr13 71064779 71064830 -30808339 + L1MC1 LINE L1 6265 6315 -18 26 0 0 0 chr13 71064977 71065003 -30808166 + AT_rich Low_complexity Low_complexity 1 26 0 186 103 0 0 chr13 71066235 71066264 -30806905 + (TTTTG)n Simple_repeat Simple_repeat 5 33 0 369 0 0 0 chr13 71067151 71067192 -30805977 + (CA)n Simple_repeat Simple_repeat 1 41 0 1321 253 98 60 chr13 71067576 71068157 -30805012 - Charlie1a DNA MER1_type -852 603 1 313 341 17 23 chr13 71068411 71068584 -30804585 - MLT1I LTR MaLR -189 220 49 201 352 68 12 chr13 71068800 71068962 -30804207 - L2 LINE L2 -1339 1975 1805 2115 113 0 7 chr13 71070058 71070358 -30802811 - AluSq SINE Alu -15 298 1 21 0 0 0 chr13 71070448 71070469 -30802700 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 71070517 71070545 -30802624 + AT_rich Low_complexity Low_complexity 1 28 0 244 266 51 0 chr13 71070856 71070935 -30802234 + MIR SINE MIR 180 262 0 373 303 19 26 chr13 71071716 71071871 -30801298 + HAL1 LINE L1 793 946 -1561 239 213 53 13 chr13 71071923 71071998 -30801171 - MLT1I LTR MaLR 0 409 332 2118 89 0 0 chr13 71072003 71072272 -30800897 + AluSc SINE Alu 21 289 -20 282 148 0 0 chr13 71072273 71072327 -30800842 + (TATG)n Simple_repeat Simple_repeat 2 55 0 293 315 18 27 chr13 71072539 71072650 -30800519 - MLT1I LTR MaLR -262 147 38 730 308 138 45 chr13 71075333 71075781 -30797388 - MLT1H1 LTR MaLR -1 554 65 706 247 37 37 chr13 71077291 71077591 -30795578 - L1MB8 LINE L1 -32 6146 5847 467 212 103 48 chr13 71077594 71077740 -30795429 - L1MB8 LINE L1 -463 5721 5568 308 198 253 0 chr13 71077742 71077833 -30795336 - L1MB8 LINE L1 -694 5470 5357 180 0 0 0 chr13 71078477 71078497 -30794672 + (A)n Simple_repeat Simple_repeat 1 20 0 261 293 147 10 chr13 71078881 71079079 -30794090 + L1MEd LINE L1 592 816 -5303 311 301 20 46 chr13 71079292 71079387 -30793782 - L1MEd LINE L1 -5967 152 61 2292 130 49 47 chr13 71079387 71079582 -30793587 + MSTB1 LTR MaLR 1 194 -238 1475 130 15 65 chr13 71079582 71079843 -30793326 + AluSq SINE Alu 1 248 -65 2292 130 49 47 chr13 71079843 71080077 -30793092 + MSTB1 LTR MaLR 194 431 -1 311 301 20 46 chr13 71080077 71080134 -30793035 - L1MEd LINE L1 -6058 61 4 382 285 22 7 chr13 71080400 71080537 -30792632 + L1ME LINE L1 5557 5695 -475 24 100 0 0 chr13 71081010 71081090 -30792079 + AT_rich Low_complexity Low_complexity 1 80 0 1869 126 61 0 chr13 71081169 71081447 -30791722 + AluSx SINE Alu 2 296 -16 825 189 49 0 chr13 71081747 71081911 -30791258 - FRAM SINE Alu -7 169 1 33 0 0 0 chr13 71081969 71082002 -30791167 + AT_rich Low_complexity Low_complexity 1 33 0 447 309 47 26 chr13 71082306 71082539 -30790630 - MLT1J1 LTR MaLR -192 254 17 636 336 31 8 chr13 71082818 71083199 -30789970 + L1ME3A LINE L1 5548 5937 -233 34 65 0 0 chr13 71083404 71083466 -30789703 + AT_rich Low_complexity Low_complexity 1 62 0 23 33 0 0 chr13 71083736 71083766 -30789403 + AT_rich Low_complexity Low_complexity 1 30 0 1970 92 85 4 chr13 71084291 71084572 -30788597 - AluY SINE Alu -7 304 1 21 0 0 0 chr13 71085318 71085339 -30787830 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 71085402 71085424 -30787745 + AT_rich Low_complexity Low_complexity 1 22 0 191 344 52 10 chr13 71085829 71085925 -30787244 + L2 LINE L2 1374 1473 -1841 12347 160 41 15 chr13 71086122 71088478 -30784691 + Tigger1 DNA MER2_type 1 2418 0 322 311 50 17 chr13 71088562 71088681 -30784488 + L2 LINE L2 2214 2336 -978 190 301 0 54 chr13 71088959 71089052 -30784117 - MIR SINE MIR -100 162 75 217 309 92 33 chr13 71089609 71089761 -30783408 - MIR SINE MIR -14 248 88 25 51 0 0 chr13 71091091 71091130 -30782039 + AT_rich Low_complexity Low_complexity 1 39 0 195 186 0 0 chr13 71093219 71093262 -30779907 + (CA)n Simple_repeat Simple_repeat 2 44 0 206 222 0 0 chr13 71093264 71093300 -30779869 + polypurine Low_complexity Low_complexity 1 36 0 312 27 0 0 chr13 71093509 71093546 -30779623 + (TG)n Simple_repeat Simple_repeat 2 38 0 345 319 85 40 chr13 71094274 71094522 -30778647 + L3b LINE CR1 1204 1462 -121 2733 35 0 3 chr13 71095717 71096056 -30777113 - L1PA5 LINE L1 -1316 4830 4493 * 3827 52 9 49 chr13 71096054 71096610 -30776559 + L1PA5 LINE L1 4831 5364 -782 4582 54 7 8 chr13 71096711 71097300 -30775869 + L1PA5 LINE L1 5563 6150 -4 23 0 0 0 chr13 71097300 71097323 -30775846 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr13 71097371 71097411 -30775758 + AT_rich Low_complexity Low_complexity 1 40 0 965 170 203 29 chr13 71097445 71097686 -30775483 + MSTA LTR MaLR 1 283 -145 1206 132 0 0 chr13 71097687 71097854 -30775315 - AluSx SINE Alu -144 168 2 209 322 58 0 chr13 71097856 71097943 -30775226 - L2 LINE L2 -988 2326 2235 23 54 0 0 chr13 71097967 71098004 -30775165 + AT_rich Low_complexity Low_complexity 1 37 0 239 385 28 0 chr13 71098058 71098167 -30775002 + MIR3 SINE MIR 61 172 -36 208 388 25 45 chr13 71098779 71099021 -30774148 - L2 LINE L2 -2352 962 726 312 340 72 0 chr13 71100098 71100251 -30772918 - L1MEd LINE L1 -4969 1150 987 260 197 0 14 chr13 71100258 71100329 -30772840 + (TA)n Simple_repeat Simple_repeat 1 70 0 279 306 0 0 chr13 71100349 71100434 -30772735 - L1MC4 LINE L1 -1344 6698 6614 180 179 0 0 chr13 71100446 71100485 -30772684 + (TA)n Simple_repeat Simple_repeat 1 39 0 2012 110 35 0 chr13 71100737 71101049 -30772120 + AluSc SINE Alu 1 309 0 256 235 118 29 chr13 71101609 71101711 -30771458 + MLT1I LTR MaLR 274 384 -25 2137 83 10 3 chr13 71102024 71102326 -30770843 + AluY SINE Alu 1 304 -7 1479 202 48 70 chr13 71102562 71103015 -30770154 + MLT1B LTR MaLR 3 467 0 749 340 75 26 chr13 71103017 71103446 -30769723 + L2 LINE L2 2309 2758 -556 201 213 0 0 chr13 71103890 71103937 -30769232 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 979 127 0 0 chr13 71106119 71106253 -30766916 + AluSg SINE Alu 1 134 -176 581 118 0 0 chr13 71106353 71106438 -30766731 + AluSg/x SINE Alu 194 278 -32 852 39 0 0 chr13 71106440 71106544 -30766625 + (GAA)n Simple_repeat Simple_repeat 2 105 0 1083 302 62 13 chr13 71106561 71106948 -30766221 + MLT1E2 LTR MaLR 221 626 0 1383 165 82 70 chr13 71106993 71107321 -30765848 - MER7A DNA MER2_type -2 344 15 202 360 79 0 chr13 71107324 71107413 -30765756 + L2 LINE L2 3177 3272 0 361 300 0 0 chr13 71107493 71107593 -30765576 - MIR SINE MIR -13 249 150 227 286 0 0 chr13 71108388 71108437 -30764732 + MER91 DNA MER1_type 80 128 -12 1232 182 91 38 chr13 71109085 71109349 -30763820 + AluJo SINE Alu 1 278 -34 4501 223 54 1 chr13 71109456 71110379 -30762790 + L1PA13 LINE L1 1 972 -5815 * 14153 196 12 9 chr13 71110375 71113300 -30759869 + L1PA13 LINE L1 2511 5442 -1355 5098 123 32 7 chr13 71113301 71114112 -30759057 + L1PA13 LINE L1 5984 6814 0 678 179 11 84 chr13 71115934 71115957 -30757212 - L1MA10 LINE L1 0 6334 6312 1126 247 18 68 chr13 71115957 71116229 -30756940 - L1ME1 LINE L1 -6 6160 5919 2020 133 0 25 chr13 71116229 71116545 -30756624 + AluSx SINE Alu 1 308 -4 1126 247 18 68 chr13 71116545 71116729 -30756440 - L1ME1 LINE L1 -247 5919 5727 421 233 99 9 chr13 71116757 71116904 -30756265 - L1ME1 LINE L1 -698 5453 5321 2176 198 28 12 chr13 71117009 71117509 -30755660 - L1MC3 LINE L1 -1 7784 7277 2154 72 28 0 chr13 71118142 71118433 -30754736 - L1PA8 LINE L1 -3 6169 5871 485 188 89 0 chr13 71118434 71118546 -30754623 + pTR5 LTR ERV1 741 862 -1576 26 64 0 0 chr13 71118706 71118753 -30754416 + GC_rich Low_complexity Low_complexity 1 47 0 3986 143 16 33 chr13 71118838 71119538 -30753631 + LTR12 LTR ERV1 1 688 0 195 292 42 67 chr13 71119565 71119685 -30753484 - L3 LINE CR1 -29 1548 1432 321 237 110 34 chr13 71119704 71119822 -30753347 + L2 LINE L2 2242 2368 -946 189 94 0 0 chr13 71119823 71119855 -30753314 + (TG)n Simple_repeat Simple_repeat 1 32 0 527 332 91 0 chr13 71121219 71121439 -30751730 - MIR SINE MIR -3 259 20 939 346 60 33 chr13 71121551 71122134 -30751035 - MER115 DNA AcHobo 0 693 95 37 52 0 0 chr13 71122853 71122911 -30750258 + AT_rich Low_complexity Low_complexity 1 58 0 244 298 96 61 chr13 71123260 71123458 -30749711 + MLT1L LTR MaLR 405 609 -6 2238 106 0 3 chr13 71123791 71124093 -30749076 + AluSq SINE Alu 1 301 -12 3769 68 6 8 chr13 71124512 71124998 -30748171 + SVA Other Other 899 1383 -3 341 292 50 17 chr13 71125055 71125175 -30747994 - Charlie2 DNA MER1_type -2730 132 9 255 278 191 0 chr13 71125185 71125300 -30747869 + MIR SINE MIR 112 248 -14 259 299 77 62 chr13 71125416 71125740 -30747429 + L1MEd LINE L1 895 1223 -4896 352 336 16 8 chr13 71126944 71127066 -30746103 - L2 LINE L2 -9 3304 3182 21 0 0 0 chr13 71127330 71127351 -30745818 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 71127524 71127545 -30745624 + AT_rich Low_complexity Low_complexity 1 21 0 34 24 0 0 chr13 71128429 71128470 -30744699 + AT_rich Low_complexity Low_complexity 1 41 0 433 111 0 0 chr13 71130671 71130734 -30742435 + AluS SINE Alu 1 63 -255 275 70 0 23 chr13 71130736 71130779 -30742390 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 249 108 0 0 chr13 71131172 71131209 -30741960 + (A)n Simple_repeat Simple_repeat 1 37 0 29 28 0 0 chr13 71131738 71131774 -30741395 + AT_rich Low_complexity Low_complexity 1 36 0 498 331 17 28 chr13 71133066 71133244 -30739925 - MIR3 SINE MIR 0 208 33 1653 256 57 86 chr13 71133617 71134281 -30738888 + MER77 LTR ERV1 57 654 -5 2169 118 0 6 chr13 71135075 71135388 -30737781 + AluSq SINE Alu 1 311 -2 1903 178 6 6 chr13 71135393 71135753 -30737416 + L1PA16 LINE L1 5800 6159 -7 210 206 0 55 chr13 71135757 71135830 -30737339 + A-rich Low_complexity Low_complexity 4 72 0 1648 360 116 16 chr13 71136141 71137437 -30735732 + L2 LINE L2 96 1520 -1794 485 322 124 4 chr13 71137442 71137684 -30735485 + L2 LINE L2 1868 2138 -1176 2470 71 0 0 chr13 71137843 71138154 -30735015 - AluY SINE Alu 0 311 1 207 0 0 0 chr13 71138369 71138392 -30734777 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 36 0 0 0 chr13 71138657 71138693 -30734476 + AT_rich Low_complexity Low_complexity 1 36 0 213 261 0 0 chr13 71138741 71138787 -30734382 + (TA)n Simple_repeat Simple_repeat 1 46 0 210 95 24 24 chr13 71139524 71139566 -30733603 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr13 71141065 71141090 -30732079 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr13 71141413 71141437 -30731732 + AT_rich Low_complexity Low_complexity 1 24 0 433 124 11 11 chr13 71141782 71141871 -30731298 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 304 279 79 64 chr13 71141906 71142186 -30730983 - L1ME LINE L1 -354 5808 5525 22 80 0 0 chr13 71142597 71142647 -30730522 + AT_rich Low_complexity Low_complexity 1 50 0 7229 228 23 14 chr13 71142922 71144547 -30728622 - L1PA12 LINE L1 -5074 2510 91 5046 186 116 2 chr13 71144546 71145656 -30727513 + L1PA12 LINE L1 2441 3677 -2469 * 5729 157 96 1 chr13 71145656 71147422 -30725747 + L1PA12 LINE L1 4313 6164 -4 273 183 17 17 chr13 71147444 71147504 -30725665 - MER53 DNA DNA -129 60 1 596 59 21 64 chr13 71147529 71147716 -30725453 + (TA)n Simple_repeat Simple_repeat 2 180 0 246 86 40 80 chr13 71147748 71147923 -30725246 + (TA)n Simple_repeat Simple_repeat 2 169 0 215 182 79 0 chr13 71147932 71148097 -30725072 + (TATAG)n Simple_repeat Simple_repeat 2 179 0 652 227 0 0 chr13 71148205 71148324 -30724845 - MER74C LTR ERVL -145 315 197 2130 205 27 8 chr13 71148369 71148847 -30724322 - L1MA10 LINE L1 -76 6258 5772 329 240 115 0 chr13 71148854 71148958 -30724211 + MER53 DNA DNA 74 189 0 431 299 170 26 chr13 71149153 71149494 -30723675 - L1MEd LINE L1 -4881 1238 849 2396 70 7 0 chr13 71149549 71149847 -30723322 - AluY SINE Alu -11 300 1 204 135 27 0 chr13 71149969 71150006 -30723163 + CT-rich Low_complexity Low_complexity 2 39 0 665 135 48 0 chr13 71150295 71150421 -30722748 - L1MB3 LINE L1 -1 6182 6051 1286 158 48 63 chr13 71150511 71150847 -30722322 + THE1C LTR MaLR 1 364 0 575 292 12 0 chr13 71151533 71151701 -30721468 + MER82 DNA MER2_type 15 184 -469 823 158 36 207 chr13 71151818 71152201 -30720968 - LTR1B LTR ERV1 -69 757 441 1415 135 13 16 chr13 71152201 71152499 -30720670 + THE1B LTR MaLR 1 375 0 1148 250 57 44 chr13 71152504 71152940 -30720229 - LTR1 LTR ERV1 -341 444 3 2019 234 35 7 chr13 71152943 71153395 -30719774 + MER82 DNA MER2_type 189 653 0 29 60 0 0 chr13 71153540 71153590 -30719579 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr13 71153693 71153729 -30719440 + AT_rich Low_complexity Low_complexity 1 36 0 213 167 24 0 chr13 71153780 71153822 -30719347 + (TA)n Simple_repeat Simple_repeat 2 44 0 1515 274 34 47 chr13 71156445 71157063 -30716106 + MER90 LTR ERV1 5 614 0 24 67 0 0 chr13 71157661 71157706 -30715463 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr13 71158465 71158490 -30714679 + AT_rich Low_complexity Low_complexity 1 25 0 1759 140 60 7 chr13 71158493 71158778 -30714391 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr13 71158779 71158802 -30714367 + (CA)n Simple_repeat Simple_repeat 2 24 0 281 263 0 30 chr13 71158816 71158915 -30714254 + L2 LINE L2 3004 3099 -173 201 151 38 19 chr13 71159010 71159063 -30714106 + A-rich Low_complexity Low_complexity 2 55 0 473 322 124 36 chr13 71159600 71159988 -30713181 - L2 LINE L2 -5 3308 2887 1035 89 0 0 chr13 71160299 71160434 -30712735 + AluSq SINE Alu 59 193 -120 2134 120 0 7 chr13 71162408 71162708 -30710461 - AluSx SINE Alu -14 298 1 718 259 24 0 chr13 71162938 71163108 -30710061 + MER58B DNA MER1_type 168 341 0 207 0 0 0 chr13 71163397 71163420 -30709749 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 26 88 0 0 chr13 71163698 71163766 -30709403 + AT_rich Low_complexity Low_complexity 1 68 0 2632 10 0 20 chr13 71163767 71164072 -30709097 + AluYa5 SINE Alu 1 299 -12 194 194 0 28 chr13 71164097 71164133 -30709036 - L3 LINE CR1 -49 1528 1494 481 313 61 20 chr13 71164228 71164426 -30708743 - MIR SINE MIR 0 262 57 23 0 0 0 chr13 71165323 71165346 -30707823 + AT_rich Low_complexity Low_complexity 1 23 0 6230 201 164 21 chr13 71166354 71167889 -30705280 + MER52A LTR ERV1 1 1755 0 183 244 111 67 chr13 71168639 71168729 -30704440 - MIR SINE MIR -3 259 166 294 285 85 42 chr13 71168752 71168917 -30704252 + L2 LINE L2 2812 2983 -330 24 32 0 0 chr13 71169092 71169123 -30704046 + AT_rich Low_complexity Low_complexity 1 31 0 236 366 49 8 chr13 71169123 71169246 -30703923 - MIR SINE MIR -89 173 46 25 51 0 0 chr13 71170827 71170866 -30702303 + AT_rich Low_complexity Low_complexity 1 39 0 280 221 126 11 chr13 71172803 71172898 -30700271 - MIR3 SINE MIR -36 172 67 498 188 0 0 chr13 71172984 71173085 -30700084 + (TG)n Simple_repeat Simple_repeat 2 102 0 262 338 82 82 chr13 71173427 71174592 -30698577 - L2 LINE L2 -1151 2163 999 252 389 24 12 chr13 71174743 71174910 -30698259 + L2 LINE L2 2910 3078 -194 22 70 0 0 chr13 71175227 71175270 -30697899 + AT_rich Low_complexity Low_complexity 1 43 0 198 398 48 24 chr13 71175273 71175356 -30697813 + L2 LINE L2 3161 3245 -27 284 0 0 27 chr13 71176199 71176236 -30696933 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2103 118 3 0 chr13 71177251 71177547 -30695622 + AluY SINE Alu 1 297 -14 1486 201 49 21 chr13 71178452 71178780 -30694389 + MLT1A1 LTR MaLR 1 337 -28 257 316 166 42 chr13 71179969 71180488 -30692681 - L3 LINE CR1 -373 1204 622 204 331 63 31 chr13 71180548 71180675 -30692494 - L3 LINE CR1 -1083 494 364 332 250 65 0 chr13 71181153 71181261 -30691908 - L1ME LINE L1 -5235 835 721 294 87 0 0 chr13 71182494 71182540 -30690629 + (CA)n Simple_repeat Simple_repeat 1 46 0 298 342 139 54 chr13 71182549 71182865 -30690304 - MLT1J LTR MaLR -166 345 3 215 103 26 0 chr13 71183679 71183718 -30689451 + (TA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr13 71183836 71183858 -30689311 + AT_rich Low_complexity Low_complexity 1 22 0 452 245 136 14 chr13 71184701 71184848 -30688321 - LTR33 LTR ERVL -24 497 333 248 353 87 42 chr13 71185620 71185932 -30687237 + L2 LINE L2 719 1044 -2270 25 31 0 0 chr13 71186087 71186119 -30687050 + AT_rich Low_complexity Low_complexity 1 32 0 2126 179 93 101 chr13 71186377 71186937 -30686232 + LTR8A LTR ERV1 1 558 -169 1996 132 7 0 chr13 71186937 71187243 -30685926 + AluSq SINE Alu 1 308 0 2126 179 93 101 chr13 71187243 71187411 -30685758 + LTR8A LTR ERV1 558 726 -1 2195 137 114 8 chr13 71187446 71187832 -30685337 - L1PA16 LINE L1 -13 6153 5727 1619 157 56 13 chr13 71188020 71188354 -30684815 + LTR34 LTR ERV1 271 697 -2 22 0 0 0 chr13 71188409 71188431 -30684738 + AT_rich Low_complexity Low_complexity 1 22 0 363 200 25 0 chr13 71188510 71188590 -30684579 - L1MD3 LINE L1 -14 7981 7900 * 1406 276 89 79 chr13 71188583 71189877 -30683292 - L1MC4a LINE L1 -656 7152 5846 206 288 113 0 chr13 71190284 71190364 -30682805 + L2 LINE L2 1825 1913 -1401 726 343 25 3 chr13 71190401 71190716 -30682453 + L2 LINE L2 2019 2340 -974 3812 141 19 59 chr13 71191394 71192152 -30681017 + LTR8A LTR ERV1 1 727 0 2010 142 56 11 chr13 71192203 71192562 -30680607 + THE1C LTR MaLR 1 375 0 9078 133 36 38 chr13 71192562 71194145 -30679024 + THE1C-int LTR MaLR 1 1580 0 1834 148 74 14 chr13 71194145 71194496 -30678673 + THE1C LTR MaLR 1 372 -3 449 239 184 32 chr13 71194808 71195026 -30678143 - L1MD1 LINE L1 -1 6241 5991 2513 117 41 101 chr13 71195199 71196037 -30677132 + LTR12 LTR ERV1 81 714 0 1111 103 0 7 chr13 71196113 71196268 -30676901 + AluYa5 SINE Alu 150 303 -8 21 0 0 0 chr13 71196325 71196346 -30676823 + AT_rich Low_complexity Low_complexity 1 21 0 1777 127 50 10 chr13 71196743 71197042 -30676127 + AluSx SINE Alu 1 311 -1 213 254 164 25 chr13 71197057 71197179 -30675990 + MIR SINE MIR 1 139 -123 21 57 0 0 chr13 71198265 71198300 -30674869 + AT_rich Low_complexity Low_complexity 1 35 0 432 247 60 22 chr13 71198654 71198836 -30674333 + MER53 DNA DNA 1 189 0 2512 150 36 0 chr13 71199286 71199699 -30673470 - MSTA LTR MaLR 0 428 1 329 196 0 0 chr13 71200105 71200161 -30673008 - L2 LINE L2 0 3313 3258 331 122 0 0 chr13 71200628 71200677 -30672492 - MLT2B3 LTR ERVL 0 554 506 193 179 18 18 chr13 71200828 71200884 -30672285 + CT-rich Low_complexity Low_complexity 2 57 0 1637 212 85 9 chr13 71200990 71201415 -30671754 + MSTB2 LTR MaLR 1 457 0 1856 150 52 98 chr13 71201485 71201521 -30671648 - MSTB LTR MaLR -4 422 386 2254 75 0 14 chr13 71201521 71201813 -30671356 + AluY SINE Alu 21 308 -3 1856 150 52 98 chr13 71201813 71202216 -30670953 - MSTB LTR MaLR -40 386 3 1458 220 86 12 chr13 71203020 71203347 -30669822 + MLT1A1 LTR MaLR 15 365 0 21 0 0 0 chr13 71203781 71203802 -30669367 + AT_rich Low_complexity Low_complexity 1 21 0 27 96 0 0 chr13 71203895 71203978 -30669191 + AT_rich Low_complexity Low_complexity 1 83 0 1661 175 0 16 chr13 71204038 71204346 -30668823 + AluSx SINE Alu 1 303 -9 183 303 38 53 chr13 71205049 71205181 -30667988 - MIR SINE MIR -110 152 23 295 260 40 20 chr13 71208250 71208350 -30664819 - L2 LINE L2 -19 3294 3193 2053 93 10 3 chr13 71208408 71208697 -30664472 + AluSx SINE Alu 1 291 -21 198 370 31 39 chr13 71210175 71210302 -30662867 + MIR SINE MIR 131 256 -6 1664 136 24 35 chr13 71210312 71210646 -30662523 - AluSx SINE Alu 0 331 1 1109 211 68 68 chr13 71211467 71211832 -30661337 - MLT1A1 LTR MaLR 0 365 1 187 357 41 41 chr13 71211832 71211890 -30661279 - MIR SINE MIR -51 211 154 2356 59 23 0 chr13 71211890 71212194 -30660975 + AluY SINE Alu 1 311 0 187 357 41 41 chr13 71212194 71212331 -30660838 - MIR SINE MIR -107 155 16 24 0 0 0 chr13 71212387 71212411 -30660758 + AT_rich Low_complexity Low_complexity 1 24 0 354 277 63 69 chr13 71213319 71213478 -30659691 + L2 LINE L2 3156 3313 0 25 51 0 0 chr13 71214622 71214661 -30658508 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr13 71214805 71214844 -30658325 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr13 71215413 71215445 -30657724 + AT_rich Low_complexity Low_complexity 1 32 0 2146 122 0 0 chr13 71216010 71216304 -30656865 - AluSx SINE Alu -18 294 1 1568 134 111 0 chr13 71216310 71216586 -30656583 - AluSx SINE Alu 0 306 3 1610 196 135 13 chr13 71216612 71216989 -30656180 - MSTA LTR MaLR -5 423 1 1823 115 21 3 chr13 71216990 71217278 -30655891 - MSTA-int LTR MaLR -1 1650 1358 6574 208 41 9 chr13 71217743 71219062 -30654107 - MSTA-int LTR MaLR -290 1361 1 1719 177 138 5 chr13 71219062 71219440 -30653729 - MSTA LTR MaLR 0 428 1 243 0 0 0 chr13 71219607 71219634 -30653535 + (TA)n Simple_repeat Simple_repeat 1 27 0 1810 128 24 14 chr13 71219710 71220000 -30653169 + AluSx SINE Alu 5 297 -15 537 295 99 47 chr13 71220036 71220693 -30652476 + L1MC4 LINE L1 6932 7630 -412 2019 87 56 0 chr13 71220693 71220980 -30652189 + AluSx SINE Alu 1 302 0 537 295 99 47 chr13 71220980 71221020 -30652149 + L1MC4 LINE L1 7630 7666 -376 253 165 13 13 chr13 71221292 71221371 -30651798 + (TA)n Simple_repeat Simple_repeat 1 79 0 1907 109 28 11 chr13 71221853 71222136 -30651033 - AluSc SINE Alu -12 297 10 1032 156 0 0 chr13 71224620 71224800 -30648369 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr13 71224972 71225004 -30648165 + AT_rich Low_complexity Low_complexity 1 32 0 425 376 54 24 chr13 71225295 71225704 -30647465 + L2 LINE L2 2032 2452 -862 231 351 40 40 chr13 71225837 71225988 -30647181 + MER20B DNA MER1_type 29 179 -604 * 792 266 180 11 chr13 71225986 71226358 -30646811 - LTR50 LTR ERVL -35 760 326 265 298 149 0 chr13 71227063 71227157 -30646012 + L2 LINE L2 3201 3308 -5 537 182 0 0 chr13 71227536 71227635 -30645534 - AluJ/FLAM SINE Alu -213 99 1 2251 220 46 9 chr13 71228201 71228761 -30644408 + L1MB7 LINE L1 5586 6166 -18 2469 57 0 3 chr13 71229027 71229328 -30643841 + AluY SINE Alu 1 300 -11 2413 247 60 3 chr13 71229772 71230372 -30642797 - MER82 DNA MER2_type -6 647 14 1316 265 54 22 chr13 71230394 71230840 -30642329 + LTR40b LTR ERVL 3 462 0 516 221 23 48 chr13 71231157 71231333 -30641836 - MER63A DNA MER1_type -6 204 28 2049 102 28 0 chr13 71231754 71232037 -30641132 - AluSq SINE Alu -22 291 1 294 29 0 0 chr13 71233599 71233634 -30639535 + (CA)n Simple_repeat Simple_repeat 1 35 0 1601 159 48 0 chr13 71233824 71234119 -30639050 - AluJb SINE Alu -1 311 3 3999 97 0 2 chr13 71234677 71235232 -30637937 + MER41A LTR ERV1 1 554 0 21 36 0 0 chr13 71235609 71235637 -30637532 + AT_rich Low_complexity Low_complexity 1 28 0 3980 125 34 38 chr13 71237138 71237868 -30635301 + LTR8A LTR ERV1 1 727 0 4358 146 13 4 chr13 71238715 71239419 -30633750 - MER50 LTR ERV1 -23 711 2 21 71 0 0 chr13 71239463 71239505 -30633664 + AT_rich Low_complexity Low_complexity 1 42 0 400 308 92 32 chr13 71239849 71240146 -30633023 + ERVL LTR ERVL 3240 3529 -1956 2221 144 103 5 chr13 71240351 71240741 -30632428 - MSTA LTR MaLR 0 428 1 251 406 5 27 chr13 71240754 71240978 -30632191 + ERVL LTR ERVL 4323 4541 -1223 831 332 46 22 chr13 71241098 71241508 -30631661 + ERVL LTR ERVL 4578 4997 -767 1072 302 73 27 chr13 71241820 71242777 -30630392 + L1M4 LINE L1 2452 3452 -2694 424 181 12 0 chr13 71242991 71243074 -30630095 + L1MC4a LINE L1 6904 6987 -821 2136 100 0 4 chr13 71243096 71243400 -30629769 + AluSg SINE Alu 1 303 0 7100 196 69 18 chr13 71243462 71245064 -30628105 + MER52A LTR ERV1 1 1755 0 519 256 0 51 chr13 71245072 71245267 -30627902 - L1MCa LINE L1 -5264 1300 1116 263 224 0 0 chr13 71245318 71245376 -30627793 - L1MCa LINE L1 -5454 1110 1053 * 349 188 0 0 chr13 71245360 71245424 -30627745 - L1MCa LINE L1 -5413 632 569 1180 249 82 46 chr13 71245548 71246049 -30627120 - L1MCa LINE L1 -5500 545 27 1939 133 10 0 chr13 71247546 71247840 -30625329 + AluSp SINE Alu 1 297 -16 2185 115 0 0 chr13 71250802 71251097 -30622072 + AluSg SINE Alu 1 295 -15 2316 182 24 2 chr13 71251417 71251868 -30621301 + LOR1b LTR ERV1 1 461 0 26 0 0 0 chr13 71253006 71253032 -30620137 + AT_rich Low_complexity Low_complexity 1 26 0 2059 109 3 23 chr13 71253492 71253796 -30619373 - AluSx SINE Alu -14 298 1 217 310 0 0 chr13 71254183 71254241 -30618928 + (TATG)n Simple_repeat Simple_repeat 2 59 0 762 200 19 0 chr13 71254350 71254505 -30618664 + AluJb SINE Alu 147 304 -8 1120 214 31 13 chr13 71254550 71254779 -30618390 - MER8 DNA MER2_type 0 239 7 491 243 44 39 chr13 71255346 71255527 -30617642 + MIR SINE MIR 81 262 0 30 59 0 0 chr13 71258474 71258525 -30614644 + AT_rich Low_complexity Low_complexity 1 51 0 21 82 0 0 chr13 71259357 71259406 -30613763 + AT_rich Low_complexity Low_complexity 1 49 0 22 70 0 0 chr13 71259949 71259992 -30613177 + AT_rich Low_complexity Low_complexity 1 43 0 260 299 72 0 chr13 71260081 71260178 -30612991 - MER103 DNA DNA -38 128 25 1910 144 44 39 chr13 71260596 71260956 -30612213 - THE1B LTR MaLR -2 362 1 203 427 42 0 chr13 71262324 71262467 -30610702 + L2 LINE L2 3122 3270 -2 830 258 151 81 chr13 71262791 71263352 -30609817 + MLT1E1 LTR MaLR 52 638 -16 316 260 114 0 chr13 71263369 71263492 -30609677 + MER53 DNA DNA 43 179 -10 1101 82 0 0 chr13 71264296 71264443 -30608726 - L1P LINE L1 -1883 4263 4117 711 36 0 0 chr13 71264439 71264522 -30608647 + L1P LINE L1 2215 2297 -3849 * 216 0 0 0 chr13 71266147 71266171 -30606998 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 247 248 119 20 chr13 71266965 71267066 -30606103 + MER103 DNA DNA 7 117 -49 234 269 14 106 chr13 71268006 71268147 -30605022 - MIR SINE MIR -40 222 95 27 0 0 0 chr13 71269661 71269688 -30603481 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr13 71270012 71270048 -30603121 + AT_rich Low_complexity Low_complexity 1 36 0 369 256 186 8 chr13 71270061 71270190 -30602979 - MIR SINE MIR -21 241 90 183 42 0 0 chr13 71270341 71270365 -30602804 + (CA)n Simple_repeat Simple_repeat 2 25 0 449 185 109 0 chr13 71272007 71272099 -30601070 + Tigger3(Golem) DNA MER2_type 1 102 -2927 788 141 38 233 chr13 71272102 71272364 -30600805 + Tigger3(Golem) DNA MER2_type 2818 3028 -1 1023 250 47 50 chr13 71272369 71272733 -30600436 - MLT1A1 LTR MaLR -2 363 1 22 70 0 0 chr13 71273728 71273771 -30599398 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr13 71274145 71274181 -30598988 + AT_rich Low_complexity Low_complexity 1 36 0 246 287 0 111 chr13 71274517 71274625 -30598544 - L2 LINE L2 -223 3049 2954 251 302 43 52 chr13 71274700 71274816 -30598353 - MIR SINE MIR -117 145 31 25 0 0 0 chr13 71274906 71274931 -30598238 + AT_rich Low_complexity Low_complexity 1 25 0 1069 238 29 25 chr13 71276141 71276418 -30596751 + MLT1E1 LTR MaLR 1 278 -376 268 304 205 0 chr13 71277144 71277256 -30595913 - MIR SINE MIR -92 170 36 2161 182 10 0 chr13 71278450 71278845 -30594324 + MER57A LTR ERV1 1 399 -4 1621 184 0 0 chr13 71279874 71280141 -30593028 + MLT1A1 LTR MaLR 96 362 -3 1115 282 46 29 chr13 71280141 71280554 -30592615 + MER76 LTR ERV 269 688 0 589 81 0 0 chr13 71281848 71281934 -30591235 - Alu SINE Alu 0 312 227 1741 147 177 11 chr13 71282490 71282857 -30590312 - MSTA LTR MaLR 0 428 1 8473 142 29 60 chr13 71282857 71284486 -30588683 - MSTA-int LTR MaLR 0 1580 3 1690 167 164 16 chr13 71284488 71284860 -30588309 - MSTA LTR MaLR 0 428 2 778 232 125 31 chr13 71285794 71286018 -30587151 - MIR SINE MIR -16 246 2 251 250 18 0 chr13 71286907 71286963 -30586206 - LTR16A LTR ERVL -14 436 380 2106 125 7 0 chr13 71287024 71287328 -30585841 + AluSx SINE Alu 1 306 -6 608 96 0 11 chr13 71287331 71287425 -30585744 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 406 335 26 0 chr13 71287450 71287605 -30585564 - LTR16A LTR ERVL -179 271 113 320 211 49 8 chr13 71287964 71288087 -30585082 + (TTATA)n Simple_repeat Simple_repeat 2 129 0 181 106 21 21 chr13 71288096 71288143 -30585026 + (TA)n Simple_repeat Simple_repeat 2 48 0 1574 175 13 36 chr13 71288143 71288610 -30584559 - L1M2 LINE L1 -734 5566 5119 2448 69 0 0 chr13 71288610 71288913 -30584256 - AluY SINE Alu -8 303 1 1574 175 13 36 chr13 71288913 71289050 -30584119 - L1M2 LINE L1 -1181 5119 4980 465 66 0 0 chr13 71289097 71289158 -30584011 + (CA)n Simple_repeat Simple_repeat 2 62 0 29 0 0 0 chr13 71289469 71289498 -30583671 + AT_rich Low_complexity Low_complexity 1 29 0 397 269 62 15 chr13 71291540 71291670 -30581499 - MIR SINE MIR 0 262 127 23 54 0 0 chr13 71291750 71291787 -30581382 + AT_rich Low_complexity Low_complexity 1 37 0 385 230 145 55 chr13 71292279 71292479 -30580690 + L2 LINE L2 3075 3292 -21 1134 231 88 31 chr13 71295009 71295360 -30577809 - MLT1A2 LTR MaLR 0 374 4 342 246 32 56 chr13 71295532 71295658 -30577511 - L1MCa LINE L1 -5990 436 314 29 47 0 0 chr13 71296269 71296312 -30576857 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 71296920 71296942 -30576227 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 71297442 71297464 -30575705 + AT_rich Low_complexity Low_complexity 1 22 0 3312 163 35 25 chr13 71298212 71298808 -30574361 - MER52A LTR ERV1 0 1755 1154 1290 207 19 101 chr13 71298810 71299226 -30573943 - MER52A LTR ERV1 -1140 615 234 279 243 14 0 chr13 71299781 71299851 -30573318 - MER52A LTR ERV1 -1684 71 1 22 0 0 0 chr13 71300347 71300369 -30572800 + AT_rich Low_complexity Low_complexity 1 22 0 2200 199 46 5 chr13 71300678 71301116 -30572053 + LOR1b LTR ERV1 3 458 -3 569 120 40 96 chr13 71301349 71301474 -30571695 - L1MA8 LINE L1 -5 6286 6169 1398 165 11 19 chr13 71301915 71302182 -30570987 - L1MA8 LINE L1 -172 6119 5855 1845 171 3 7 chr13 71302350 71302659 -30570510 + AluJb SINE Alu 1 308 -4 288 347 129 5 chr13 71303651 71303844 -30569325 + MIR SINE MIR 32 248 -14 672 191 49 59 chr13 71304412 71304616 -30568553 + MER3 DNA MER1_type 1 202 -7 2760 182 41 40 chr13 71304912 71305545 -30567624 - LTR27 LTR ERV1 0 636 3 327 85 0 0 chr13 71305562 71305609 -30567560 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 54 0 0 chr13 71306609 71306646 -30566523 + AT_rich Low_complexity Low_complexity 1 37 0 2215 124 44 11 chr13 71307482 71307845 -30565324 + THE1C LTR MaLR 1 375 0 5656 165 33 23 chr13 71308572 71310044 -30563125 + L1MA4A LINE L1 4807 6292 -11 1692 292 102 7 chr13 71310753 71311291 -30561878 + MLT2F LTR ERVL 1 589 -74 1604 216 107 64 chr13 71311302 71311817 -30561352 + MLT1F LTR MaLR 1 537 -5 286 285 85 48 chr13 71312170 71312335 -30560834 + L2 LINE L2 2182 2352 -962 830 311 32 26 chr13 71312921 71313265 -30559904 + L2 LINE L2 2350 2695 -619 1860 113 19 0 chr13 71313281 71313546 -30559623 + AluSq SINE Alu 38 307 -6 573 244 37 91 chr13 71313600 71313842 -30559327 + L2 LINE L2 3085 3313 0 558 308 83 9 chr13 71313840 71314106 -30559063 + L2 LINE L2 2719 3000 -313 * 29 47 0 0 chr13 71314924 71314967 -30558202 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr13 71316054 71316093 -30557076 + AT_rich Low_complexity Low_complexity 1 39 0 444 274 7 37 chr13 71316965 71317100 -30556069 - MLT2E LTR ERVL -466 162 32 192 297 156 0 chr13 71317162 71317226 -30555943 - L2 LINE L2 -1 3271 3198 345 278 262 16 chr13 71317451 71317642 -30555527 - MIR SINE MIR -23 239 2 31 0 0 0 chr13 71317759 71317790 -30555379 + AT_rich Low_complexity Low_complexity 1 31 0 644 127 9 0 chr13 71317889 71317999 -30555170 + (GGAA)n Simple_repeat Simple_repeat 2 112 0 210 284 30 0 chr13 71318021 71318088 -30555081 - L2 LINE L2 -1 3312 3244 23 33 0 0 chr13 71318691 71318721 -30554448 + AT_rich Low_complexity Low_complexity 1 30 0 642 302 156 16 chr13 71318834 71319285 -30553884 - LTR33A LTR ERVL 0 523 42 422 350 104 34 chr13 71319612 71320081 -30553088 + L2 LINE L2 2812 3313 0 779 253 13 105 chr13 71320585 71320976 -30552193 - MER57A LTR ERV1 0 403 49 2285 96 0 0 chr13 71321164 71321457 -30551712 + AluY SINE Alu 1 293 -18 242 329 14 0 chr13 71322719 71322789 -30550380 - Zaphod DNA AcHobo -3953 78 8 701 276 16 56 chr13 71323531 71323781 -30549388 - MIR SINE MIR -18 244 5 22 0 0 0 chr13 71325712 71325734 -30547435 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 71325885 71325914 -30547255 + AT_rich Low_complexity Low_complexity 1 29 0 1517 159 41 44 chr13 71326415 71326730 -30546439 + MER50 LTR ERV1 1 314 -420 181 268 0 0 chr13 71327801 71327842 -30545327 + L2 LINE L2 2931 2971 -301 209 211 18 0 chr13 71328021 71328078 -30545091 + (TA)n Simple_repeat Simple_repeat 1 58 0 1210 312 111 67 chr13 71328626 71329946 -30543223 - L2 LINE L2 -113 3200 1791 228 299 128 54 chr13 71330152 71330226 -30542943 - MLT1J2 LTR MaLR -201 249 182 1739 150 0 54 chr13 71330226 71330540 -30542629 - AluJo SINE Alu -15 297 1 228 299 128 54 chr13 71330540 71330669 -30542500 - MLT1J2 LTR MaLR -268 182 31 2061 209 59 6 chr13 71330770 71331263 -30541906 - L1MC3 LINE L1 -20 7765 7247 261 244 100 0 chr13 71331484 71331574 -30541595 - L2 LINE L2 -1895 1419 1321 1186 191 43 4 chr13 71331607 71331946 -30541223 + MER47A DNA MER2_type 6 363 -3 1631 179 10 27 chr13 71332265 71332562 -30540607 + AluJo SINE Alu 1 292 -20 21 36 0 0 chr13 71333251 71333279 -30539890 + AT_rich Low_complexity Low_complexity 1 28 0 3693 186 47 19 chr13 71333395 71334175 -30538994 + L1MA7 LINE L1 5407 6208 -83 1629 196 71 35 chr13 71334392 71334856 -30538313 + L1MA7 LINE L1 5809 6289 -2 1125 183 56 0 chr13 71335678 71335888 -30537281 + LTR26 LTR ERV1 1 222 -381 373 151 96 0 chr13 71335888 71335961 -30537208 + MADE1 DNA Mariner 1 80 0 * 1538 170 69 118 chr13 71335961 71336359 -30536810 + LTR26 LTR ERV1 226 603 0 21 0 0 0 chr13 71337237 71337258 -30535911 + AT_rich Low_complexity Low_complexity 1 21 0 3205 140 21 111 chr13 71337300 71338059 -30535110 - LTR8 LTR ERV1 0 691 1 2259 78 0 3 chr13 71338259 71338555 -30534614 - AluY SINE Alu -16 295 1 893 157 0 26 chr13 71339836 71340022 -30533147 - AluSg/x SINE Alu 0 315 134 1138 130 0 12 chr13 71340649 71340811 -30532358 + AluSq SINE Alu 133 292 -21 23 33 0 0 chr13 71340831 71340861 -30532308 + AT_rich Low_complexity Low_complexity 1 30 0 517 275 187 33 chr13 71342520 71342793 -30530376 - L2 LINE L2 0 3313 2999 230 0 33 0 chr13 71343320 71343350 -30529819 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2085 100 7 3 chr13 71343673 71343972 -30529197 + AluY SINE Alu 1 300 -11 1534 212 0 0 chr13 71344463 71344737 -30528432 + AluJb SINE Alu 22 295 -17 704 104 0 0 chr13 71344754 71344850 -30528319 + L1P3 LINE L1 1 96 -6365 337 64 0 21 chr13 71344848 71344895 -30528274 + L1P3 LINE L1 1137 1182 -5279 * 237 299 147 29 chr13 71345296 71345500 -30527669 - LTR16C LTR ERVL -3 488 261 1936 152 7 0 chr13 71346837 71347147 -30526022 - AluSx SINE Alu 0 312 1 1250 188 169 78 chr13 71347313 71347776 -30525393 + MLT1D LTR MaLR 1 505 0 372 369 33 29 chr13 71348180 71348485 -30524684 - L3 LINE CR1 -210 1367 980 22 94 0 0 chr13 71348793 71348857 -30524312 + AT_rich Low_complexity Low_complexity 1 64 0 27 81 0 0 chr13 71349989 71350051 -30523118 + AT_rich Low_complexity Low_complexity 1 62 0 608 333 13 17 chr13 71350053 71350284 -30522885 + MIR SINE MIR 7 236 -26 4152 8 8 2 chr13 71353064 71353543 -30519626 + L1PA3 LINE L1 5674 6155 0 283 209 38 9 chr13 71353945 71354050 -30519119 + (TA)n Simple_repeat Simple_repeat 1 108 0 35 0 0 0 chr13 71354278 71354313 -30518856 + AT_rich Low_complexity Low_complexity 1 35 0 908 146 6 67 chr13 71356360 71356495 -30516674 + MLT2B3 LTR ERVL 2 125 -429 2580 110 8 8 chr13 71356495 71356868 -30516301 + THE1C LTR MaLR 3 375 0 908 146 6 67 chr13 71356868 71356910 -30516259 + MLT2B3 LTR ERVL 125 168 -386 6715 65 14 0 chr13 71356944 71357968 -30515201 - L1PA7 LINE L1 -1 6153 5122 2456 208 39 39 chr13 71357970 71358605 -30514564 + MLT1A1-int LTR MaLR 1060 1735 0 1472 243 22 3 chr13 71358605 71358963 -30514206 + MLT1A1 LTR MaLR 1 365 0 3463 149 136 125 chr13 71359756 71360842 -30512327 - pTR5 LTR ERV1 -9 2429 366 2010 98 42 39 chr13 71360862 71361168 -30512001 - AluY SINE Alu -4 307 1 1715 156 20 43 chr13 71361305 71361652 -30511517 - MER44D DNA MER2_type 0 609 1 189 0 0 0 chr13 71362179 71362200 -30510969 + (T)n Simple_repeat Simple_repeat 1 21 0 387 239 108 23 chr13 71362850 71362980 -30510189 + MLT1J1 LTR MaLR 1 141 -305 398 295 73 67 chr13 71364355 71364537 -30508632 - HAL1 LINE L1 -1561 946 760 1421 236 30 33 chr13 71364537 71364902 -30508267 + MLT1A1 LTR MaLR 2 365 0 398 295 73 67 chr13 71364902 71365075 -30508094 - HAL1 LINE L1 -1747 760 589 186 43 0 0 chr13 71365548 71365571 -30507598 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 751 213 109 6 chr13 71366238 71366412 -30506757 + MER58A DNA MER1_type 1 192 -32 404 338 79 43 chr13 71366552 71366969 -30506200 + LTR16B LTR ERVL 1 432 -32 916 195 152 103 chr13 71367157 71367505 -30505664 + MSTD LTR MaLR 1 396 0 27 49 0 0 chr13 71367784 71367825 -30505344 + AT_rich Low_complexity Low_complexity 1 41 0 246 269 81 47 chr13 71368218 71368367 -30504802 - MER67D LTR ERV1 -2 512 359 347 274 9 9 chr13 71368424 71368530 -30504639 - MER67C LTR ERV1 -318 392 287 233 256 49 12 chr13 71368588 71368670 -30504499 - MIR SINE MIR -73 189 105 880 115 0 0 chr13 71368701 71368831 -30504338 + AluSg/x SINE Alu 176 305 -7 675 241 19 38 chr13 71368860 71369072 -30504097 - MER3 DNA MER1_type -1 208 1 2087 102 0 0 chr13 71369222 71369506 -30503663 - AluSx SINE Alu -28 284 1 1057 210 25 103 chr13 71370586 71370897 -30502272 - MLT1A1 LTR MaLR 0 365 90 2001 144 0 3 chr13 71370897 71371195 -30501974 - AluSx SINE Alu -14 298 2 1057 210 25 103 chr13 71371195 71371279 -30501890 - MLT1A1 LTR MaLR -275 90 1 208 371 0 0 chr13 71372052 71372114 -30501055 - MIR3 SINE MIR -26 182 121 1272 194 15 23 chr13 71372118 71372381 -30500788 + AluJo SINE Alu 7 267 -45 25 51 0 0 chr13 71372447 71372486 -30500683 + AT_rich Low_complexity Low_complexity 1 39 0 1618 161 3 68 chr13 71373678 71373989 -30499180 - AluJo SINE Alu -21 291 1 314 292 35 14 chr13 71374560 71374704 -30498465 - L1MC5 LINE L1 -53 7908 7762 298 260 81 24 chr13 71374937 71375060 -30498109 + MIR SINE MIR 74 203 -59 22 0 0 0 chr13 71377379 71377401 -30495768 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr13 71378788 71378821 -30494348 + (CA)n Simple_repeat Simple_repeat 1 33 0 23 0 0 0 chr13 71379484 71379507 -30493662 + AT_rich Low_complexity Low_complexity 1 23 0 233 268 18 0 chr13 71379578 71379634 -30493535 + L2 LINE L2 3255 3311 -2 239 312 101 40 chr13 71381153 71381352 -30491817 + MIR SINE MIR 49 259 -3 2170 105 0 13 chr13 71381405 71381709 -30491460 - AluSc SINE Alu -9 300 1 21 36 0 0 chr13 71383308 71383336 -30489833 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 71384270 71384291 -30488878 + AT_rich Low_complexity Low_complexity 1 21 0 21 37 0 56 chr13 71384655 71384709 -30488460 + AT_rich Low_complexity Low_complexity 1 51 0 1636 210 219 22 chr13 71384844 71385397 -30487772 + L1PA12 LINE L1 1 662 -6919 26 0 0 0 chr13 71387617 71387643 -30485526 + AT_rich Low_complexity Low_complexity 1 26 0 33 56 0 0 chr13 71387744 71387798 -30485371 + AT_rich Low_complexity Low_complexity 1 54 0 22 0 0 0 chr13 71388075 71388097 -30485072 + AT_rich Low_complexity Low_complexity 1 22 0 2144 118 0 0 chr13 71388384 71388690 -30484479 - AluY SINE Alu -5 306 1 25 0 0 0 chr13 71388894 71388919 -30484250 + AT_rich Low_complexity Low_complexity 1 25 0 2194 105 3 0 chr13 71391107 71391402 -30481767 + AluSp SINE Alu 1 296 -17 212 371 0 11 chr13 71392043 71392132 -30481037 + L2 LINE L2 3184 3271 -1 408 235 93 62 chr13 71392197 71392398 -30480771 + MLT1F1 LTR MaLR 1 266 -301 493 311 8 5 chr13 71392409 71392599 -30480570 + MLT1F1 LTR MaLR 402 563 -4 1326 289 90 19 chr13 71392942 71393607 -30479562 + HsTC2a DNA Tc2 1 712 -32 22 0 0 0 chr13 71393819 71393841 -30479328 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr13 71394919 71394960 -30478209 + AT_rich Low_complexity Low_complexity 1 41 0 323 376 32 25 chr13 71394961 71395240 -30477929 - HAL1 LINE L1 -2 2505 2225 392 332 112 36 chr13 71395805 71396224 -30476945 - HAL1 LINE L1 -582 1925 1475 246 284 78 43 chr13 71396285 71396517 -30476652 - L1MEd LINE L1 -4876 1243 1004 699 162 13 32 chr13 71397106 71397260 -30475909 - L1MA10 LINE L1 -3 6331 6181 551 220 16 40 chr13 71397260 71397521 -30475648 - L1ME2 LINE L1 -131 6033 5204 21 0 0 0 chr13 71398308 71398329 -30474840 + AT_rich Low_complexity Low_complexity 1 21 0 194 349 79 40 chr13 71398398 71398524 -30474645 - L2 LINE L2 -8 3305 3175 432 0 0 0 chr13 71398847 71398895 -30474274 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 1437 183 86 0 chr13 71398898 71399166 -30474003 + AluJb SINE Alu 1 291 -21 260 181 12 0 chr13 71399178 71399261 -30473908 + (TA)n Simple_repeat Simple_repeat 1 84 0 212 167 24 0 chr13 71399261 71399303 -30473866 + (TG)n Simple_repeat Simple_repeat 1 43 0 392 304 130 38 chr13 71399324 71399617 -30473552 - L2 LINE L2 -654 2660 2341 26 30 0 0 chr13 71400267 71400300 -30472869 + AT_rich Low_complexity Low_complexity 1 33 0 2333 246 59 11 chr13 71400543 71401156 -30472013 - MER82 DNA MER2_type -5 648 7 222 91 0 0 chr13 71401156 71401189 -30471980 + (CA)n Simple_repeat Simple_repeat 2 34 0 584 268 13 13 chr13 71401228 71401385 -30471784 + MLT1D LTR MaLR 12 168 -337 180 77 0 0 chr13 71402557 71402583 -30470586 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 22 88 0 0 chr13 71403153 71403210 -30469959 + AT_rich Low_complexity Low_complexity 1 57 0 2166 118 0 3 chr13 71403300 71403604 -30469565 - AluSc SINE Alu -6 303 1 23 33 0 0 chr13 71403834 71403864 -30469305 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 71404308 71404336 -30468833 + AT_rich Low_complexity Low_complexity 1 28 0 794 216 100 44 chr13 71404418 71404777 -30468392 - MSTC LTR MaLR 0 428 1 2117 121 0 7 chr13 71405307 71405605 -30467564 - AluSq SINE Alu -13 300 5 12400 25 2 1 chr13 71405918 71407428 -30465741 - L1P LINE L1 -2416 3730 2219 10615 31 2 1 chr13 71407428 71409463 -30463706 + L1PA3 LINE L1 4117 6152 -3 327 85 0 0 chr13 71409503 71409550 -30463619 + (GA)n Simple_repeat Simple_repeat 2 48 0 182 324 72 29 chr13 71409647 71409786 -30463383 - L2 LINE L2 -2942 372 228 209 125 0 25 chr13 71411174 71411214 -30461955 + (TTTTTG)n Simple_repeat Simple_repeat 4 42 0 367 197 0 0 chr13 71412533 71412599 -30460570 + L2 LINE L2 2299 2364 -950 697 278 88 39 chr13 71412600 71413117 -30460052 + MLT1G3 LTR MaLR 1 589 -6 438 283 46 122 chr13 71413126 71413296 -30459873 + L2 LINE L2 2368 2503 -811 1808 92 16 8 chr13 71413296 71413545 -30459624 + AluSc SINE Alu 39 289 -20 438 283 46 122 chr13 71413545 71413703 -30459466 + L2 LINE L2 2503 2671 -643 653 296 92 43 chr13 71413718 71414089 -30459080 - LTR16A1 LTR ERVL -19 438 50 23 86 0 0 chr13 71414219 71414277 -30458892 + AT_rich Low_complexity Low_complexity 1 58 0 188 330 0 53 chr13 71414343 71414437 -30458732 + L2 LINE L2 3180 3268 -4 544 268 89 6 chr13 71414681 71414849 -30458320 - MER58A DNA MER1_type 0 224 43 192 401 57 13 chr13 71415239 71415396 -30457773 + MIR SINE MIR 20 183 -79 2179 104 0 3 chr13 71416101 71416400 -30456769 + AluY SINE Alu 1 298 -13 2469 30 0 33 chr13 71417121 71417422 -30455747 + AluY SINE Alu 1 291 -20 1612 206 67 59 chr13 71417837 71418343 -30454826 + MER67D LTR ERV1 1 510 -4 1609 107 0 19 chr13 71418513 71418775 -30454394 - L1MA4 LINE L1 -6 6294 6038 3518 174 19 6 chr13 71418782 71419461 -30453708 - L1MA4 LINE L1 -5 6295 5608 1863 146 0 33 chr13 71419925 71420226 -30452943 - AluJo SINE Alu -18 294 4 21 57 0 0 chr13 71420683 71420718 -30452451 + AT_rich Low_complexity Low_complexity 1 35 0 36 0 0 0 chr13 71421030 71421066 -30452103 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 71421084 71421105 -30452064 + AT_rich Low_complexity Low_complexity 1 21 0 561 170 28 19 chr13 71421213 71421319 -30451850 - U6 snRNA snRNA 0 107 1 23 0 0 0 chr13 71421744 71421767 -30451402 + AT_rich Low_complexity Low_complexity 1 23 0 345 261 188 7 chr13 71421901 71422039 -30451130 - MER5A DNA MER1_type 0 189 27 679 270 73 39 chr13 71422218 71422356 -30450813 + LTR37A LTR ERV1 59 191 -235 3578 139 13 90 chr13 71422356 71422541 -30450628 - LTR8 LTR ERV1 0 691 493 2800 3 0 3 chr13 71422541 71422851 -30450318 + AluYa5 SINE Alu 1 309 -2 3578 139 13 90 chr13 71422851 71423413 -30449756 - LTR8 LTR ERV1 -198 493 1 679 270 73 39 chr13 71423413 71423629 -30449540 + LTR37A LTR ERV1 191 425 -1 22 0 0 0 chr13 71424044 71424066 -30449103 + AT_rich Low_complexity Low_complexity 1 22 0 1615 126 114 15 chr13 71424076 71424338 -30448831 + AluSg SINE Alu 1 288 -22 386 243 52 52 chr13 71425083 71425219 -30447950 + MER58 DNA MER1_type 1 136 -2284 2019 110 0 0 chr13 71425246 71425527 -30447642 - AluSx SINE Alu -2 310 30 625 173 36 62 chr13 71425540 71425765 -30447404 - LTR21B LTR ERV1 0 438 220 831 233 0 5 chr13 71426321 71426527 -30446642 + AluSq SINE Alu 1 205 -108 1650 178 11 4 chr13 71426541 71426822 -30446347 - AluSx SINE Alu -27 285 3 21 36 0 0 chr13 71429153 71429181 -30443988 + AT_rich Low_complexity Low_complexity 1 28 0 253 231 0 0 chr13 71430237 71430289 -30442880 + LTR30 LTR ERV1 1 52 -670 1635 159 48 8 chr13 71430291 71430697 -30442472 + LTR12 LTR ERV1 57 2036 -402 271 265 10 10 chr13 71430697 71430795 -30442374 + LTR30 LTR ERV1 556 653 -69 1289 136 39 0 chr13 71430795 71431001 -30442168 + LTR12 LTR ERV1 490 703 -11 229 370 32 37 chr13 71431501 71431717 -30441452 - LTR16B LTR ERVL -146 318 104 652 341 47 28 chr13 71431857 71432326 -30440843 - ERVL LTR ERVL -381 5383 4906 320 331 35 15 chr13 71432824 71432997 -30440172 - ERVL LTR ERVL -1351 4303 4123 1145 279 37 19 chr13 71432998 71433320 -30439849 + MER45B DNA AcHobo 100 427 -613 349 218 39 0 chr13 71433322 71433400 -30439769 + MLT1C LTR MaLR 11 91 -376 559 181 0 0 chr13 71433405 71433499 -30439670 + MLT1C LTR MaLR 374 467 0 1087 226 56 43 chr13 71433506 71433811 -30439358 + MER45B DNA AcHobo 430 738 -302 1932 119 143 6 chr13 71434986 71435314 -30437855 + MSTA LTR MaLR 55 427 -1 228 311 56 11 chr13 71435793 71435883 -30437286 + Charlie8 DNA MER1_type 166 259 -2158 2090 98 3 3 chr13 71435960 71436266 -30436903 - AluSp SINE Alu 0 306 1 21 36 0 0 chr13 71436671 71436699 -30436470 + AT_rich Low_complexity Low_complexity 1 28 0 345 24 0 0 chr13 71436983 71437025 -30436144 + (CA)n Simple_repeat Simple_repeat 2 43 0 259 339 107 16 chr13 71437668 71437789 -30435380 - MIR SINE MIR -89 173 42 25 0 0 0 chr13 71437971 71437996 -30435173 + AT_rich Low_complexity Low_complexity 1 25 0 2157 81 0 11 chr13 71438096 71438407 -30434762 - AluSc SINE Alu 0 308 1 185 328 0 0 chr13 71438484 71438545 -30434624 - L2 LINE L2 0 3272 3212 180 0 0 0 chr13 71439354 71439374 -30433795 + (TA)n Simple_repeat Simple_repeat 1 20 0 1928 143 18 0 chr13 71440136 71440448 -30432721 + AluSx SINE Alu 1 317 0 2112 329 78 66 chr13 71440474 71440552 -30432617 - L2 LINE L2 -476 2838 2762 1181 110 150 0 chr13 71440552 71440752 -30432417 - MER30 DNA MER1_type 0 230 1 2112 329 78 66 chr13 71440752 71441774 -30431395 - L2 LINE L2 -552 2762 1753 1292 230 58 4 chr13 71441774 71442048 -30431121 - AluJo SINE Alu -19 293 5 2112 329 78 66 chr13 71442048 71442094 -30431075 - L2 LINE L2 -1561 1753 1709 1431 139 70 11 chr13 71442094 71442381 -30430788 + L1MA8 LINE L1 5983 6286 -5 2112 329 78 66 chr13 71442381 71442965 -30430204 - L2 LINE L2 -1605 1709 1086 207 307 45 23 chr13 71443220 71443308 -30429861 + MIR SINE MIR 12 101 -161 866 171 6 0 chr13 71443441 71443599 -30429570 + HUERS-P3 LTR ERV1 8753 8911 -8 2771 119 123 6 chr13 71443599 71444094 -30429075 + LTR9B LTR ERV1 8 560 -84 21 0 0 0 chr13 71445580 71445601 -30427568 + AT_rich Low_complexity Low_complexity 1 21 0 182 302 48 0 chr13 71445807 71445870 -30427299 + MIR SINE MIR 168 233 -29 28 61 0 0 chr13 71446610 71446659 -30426510 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 71446928 71446949 -30426220 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 71447578 71447599 -30425570 + AT_rich Low_complexity Low_complexity 1 21 0 2360 194 72 52 chr13 71447653 71448423 -30424746 - LTR1B LTR ERV1 0 826 1 1417 184 3 103 chr13 71448536 71448867 -30424302 + AluJb SINE Alu 2 299 -3 361 347 34 20 chr13 71448929 71449100 -30424069 + MIR SINE MIR 15 190 -62 326 169 0 14 chr13 71449128 71449199 -30423970 + CT-rich Low_complexity Low_complexity 4 73 0 476 354 50 40 chr13 71449245 71449723 -30423446 + MLT1J LTR MaLR 3 485 -26 1393 236 63 47 chr13 71450348 71450609 -30422560 - MLT1D LTR MaLR -6 499 225 5637 66 1 3 chr13 71450609 71451341 -30421828 - L1PA7 LINE L1 -2 6152 5422 1393 236 63 47 chr13 71451341 71451570 -30421599 - MLT1D LTR MaLR -280 225 1 23 33 0 0 chr13 71451931 71451961 -30421208 + AT_rich Low_complexity Low_complexity 1 30 0 437 204 41 0 chr13 71452208 71452380 -30420789 + (TA)n Simple_repeat Simple_repeat 2 180 0 31 0 0 0 chr13 71453313 71453344 -30419825 + AT_rich Low_complexity Low_complexity 1 31 0 673 198 12 35 chr13 71454211 71454265 -30418904 - L1MD1 LINE L1 -1 6241 6187 3179 179 28 35 chr13 71454265 71454980 -30418189 - MER67C LTR ERV1 0 710 1 673 198 12 35 chr13 71454980 71455097 -30418072 - L1MD1 LINE L1 -55 6187 6074 1406 156 123 22 chr13 71455571 71455847 -30417322 - AluSg SINE Alu -6 304 1 21 36 0 0 chr13 71456225 71456253 -30416916 + AT_rich Low_complexity Low_complexity 1 28 0 357 206 52 19 chr13 71456443 71456555 -30416614 + L1MA9 LINE L1 5667 5790 -379 364 91 74 16 chr13 71456557 71456678 -30416491 + (TA)n Simple_repeat Simple_repeat 1 128 0 2232 191 21 53 chr13 71456678 71457208 -30415961 + L1MA9 LINE L1 5785 6297 -15 21 0 0 0 chr13 71457974 71457995 -30415174 + AT_rich Low_complexity Low_complexity 1 21 0 2037 118 7 0 chr13 71458361 71458640 -30414529 - AluSg SINE Alu -29 281 1 22 0 0 0 chr13 71459813 71459835 -30413334 + AT_rich Low_complexity Low_complexity 1 22 0 43 64 0 0 chr13 71460132 71460210 -30412959 + AT_rich Low_complexity Low_complexity 1 78 0 215 182 23 0 chr13 71460291 71460335 -30412834 + (TA)n Simple_repeat Simple_repeat 1 45 0 1861 121 0 68 chr13 71460511 71460834 -30412335 + AluY SINE Alu 1 301 -10 21 36 0 0 chr13 71461255 71461283 -30411886 + AT_rich Low_complexity Low_complexity 1 28 0 283 49 0 24 chr13 71461284 71461325 -30411844 - L1PA7 LINE L1 -8 6146 6107 21 0 0 0 chr13 71461747 71461768 -30411401 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 71463057 71463085 -30410084 + AT_rich Low_complexity Low_complexity 1 28 0 188 328 53 35 chr13 71463185 71463356 -30409813 - MER5C DNA MER1_type -130 194 21 461 274 13 89 chr13 71464171 71464408 -30408761 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chr13 71464678 71464707 -30408462 + AT_rich Low_complexity Low_complexity 1 29 0 248 0 31 0 chr13 71465640 71465672 -30407497 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1783 212 6 9 chr13 71465765 71466127 -30407042 + MLT1A1 LTR MaLR 1 365 0 2905 165 52 7 chr13 71467257 71467796 -30405373 + Tigger3b DNA MER2_type 2 564 -667 5203 163 40 24 chr13 71467797 71468957 -30404212 + L1PA16 LINE L1 4470 5611 -555 2367 118 8 31 chr13 71468957 71469339 -30403830 + THE1C LTR MaLR 1 373 -2 5203 163 40 24 chr13 71469339 71469594 -30403575 + L1PA16 LINE L1 5611 5861 -305 1561 181 81 16 chr13 71469594 71469915 -30403254 + MER61A LTR ERV1 1 342 -1 5203 163 40 24 chr13 71469915 71470174 -30402995 + L1PA16 LINE L1 5861 6165 -1 2838 113 191 14 chr13 71470180 71470744 -30402425 + Tigger3b DNA MER2_type 547 1210 -22 195 167 0 0 chr13 71471956 71471998 -30401171 + GA-rich Low_complexity Low_complexity 1 42 0 238 380 74 18 chr13 71473129 71473292 -30399877 - L2 LINE L2 -245 3068 2897 410 346 77 59 chr13 71473362 71473766 -30399403 - L2 LINE L2 -482 2832 2422 1832 90 80 17 chr13 71474804 71475179 -30397990 - LTR7 LTR ERV1 -2 448 1 318 197 106 110 chr13 71475308 71475562 -30397607 + LTR37B LTR ERV1 139 391 -77 5144 45 0 0 chr13 71475619 71476243 -30396926 - L1PA4 LINE L1 -3 6152 5529 572 121 16 33 chr13 71476472 71476654 -30396515 + (TA)n Simple_repeat Simple_repeat 1 179 0 180 125 0 0 chr13 71476668 71476700 -30396469 + (TA)n Simple_repeat Simple_repeat 2 33 0 1337 277 35 28 chr13 71477285 71477714 -30395455 + LTR16A LTR ERVL 19 450 0 2767 180 110 13 chr13 71477830 71478441 -30394728 - LTR51 LTR ERV1 -1 670 1 1567 230 31 6 chr13 71479467 71479819 -30393350 - MLT1A1 LTR MaLR -4 361 1 328 342 217 20 chr13 71479835 71480241 -30392928 + L2 LINE L2 2812 3297 -16 226 143 0 0 chr13 71480310 71480352 -30392817 - LTR66 LTR ERVL -169 441 400 205 250 109 16 chr13 71480390 71480454 -30392715 - L2 LINE L2 -499 2815 2746 1883 189 44 19 chr13 71480457 71480874 -30392295 - MLT2C2 LTR ERVL -42 478 7 1906 181 51 30 chr13 71480900 71481441 -30391728 - MLT2A2 LTR ERVL 0 554 1 2169 82 3 3 chr13 71482971 71483253 -30389916 + AluSq SINE Alu 1 282 -31 393 81 0 0 chr13 71483255 71483317 -30389852 + (TA)n Simple_repeat Simple_repeat 2 63 0 2164 106 0 16 chr13 71483953 71484256 -30388913 - AluSg SINE Alu -10 300 3 2175 177 37 2 chr13 71484499 71484901 -30388268 + LOR1b LTR ERV1 46 461 0 617 312 73 21 chr13 71485588 71485822 -30387347 - MIR SINE MIR -1 261 16 827 210 0 0 chr13 71485969 71486112 -30387057 - FRAM SINE Alu -33 143 1 2072 102 14 0 chr13 71486143 71486427 -30386742 - AluSq SINE Alu -25 288 1 260 284 158 4 chr13 71486544 71486822 -30386347 - L1ME4a LINE L1 0 6121 5801 2490 44 0 0 chr13 71489026 71489323 -30383846 + AluY SINE Alu 1 297 -14 623 232 29 48 chr13 71491092 71491364 -30381805 - Charlie2b DNA MER1_type -200 2582 2316 500 241 44 70 chr13 71491496 71491827 -30381342 - Charlie2b DNA MER1_type -959 1823 1408 * 1370 176 17 66 chr13 71491820 71492167 -30381002 - LTR1 LTR ERV1 -258 527 198 436 103 77 13 chr13 71492211 71492289 -30380880 + LTR1 LTR ERV1 537 619 -166 191 287 50 79 chr13 71492333 71492434 -30380735 - L2 LINE L2 -2845 469 372 764 147 0 61 chr13 71492440 71492603 -30380566 - LTR1 LTR ERV1 0 785 633 688 169 20 47 chr13 71492603 71492751 -30380418 + AluJb SINE Alu 164 307 -5 307 365 33 17 chr13 71492820 71493001 -30380168 + L2 LINE L2 2459 2642 -672 387 329 84 78 chr13 71493200 71493687 -30379482 + L2 LINE L2 2824 3313 0 240 364 53 0 chr13 71493849 71493981 -30379188 - L2 LINE L2 -1906 1408 1270 24 32 0 0 chr13 71494062 71494093 -30379076 + AT_rich Low_complexity Low_complexity 1 31 0 1619 157 45 11 chr13 71494607 71494893 -30378276 + AluJo SINE Alu 6 301 -11 257 246 36 9 chr13 71495355 71495465 -30377704 + (TA)n Simple_repeat Simple_repeat 1 113 0 199 348 37 30 chr13 71498027 71498162 -30375007 + MIR SINE MIR 15 150 -112 2328 198 52 28 chr13 71499758 71500360 -30372809 - L1MC2 LINE L1 -11 6333 5718 2649 245 60 29 chr13 71500527 71502287 -30370882 - L1MC2 LINE L1 -624 5720 3794 3154 165 19 2 chr13 71503969 71504507 -30368662 + MER44D DNA MER2_type 2 603 -2 1592 273 90 6 chr13 71504592 71505090 -30368079 + MLT1F LTR MaLR 2 541 -1 370 167 0 0 chr13 71505516 71505576 -30367593 + L1PA14 LINE L1 5566 5625 -536 3694 122 11 0 chr13 71505577 71506134 -30367035 + L1PA14 LINE L1 5598 6160 -1 222 350 55 27 chr13 71506282 71506465 -30366704 - MIR SINE MIR 0 262 75 252 372 83 16 chr13 71506627 71506748 -30366421 - L2 LINE L2 -1 3271 3143 2353 118 29 0 chr13 71506825 71507174 -30365995 + THE1B LTR MaLR 6 364 0 2079 105 10 0 chr13 71509127 71509423 -30363746 - AluSp SINE Alu -14 299 1 1512 221 18 18 chr13 71509773 71510108 -30363061 + MSTB LTR MaLR 3 337 -89 770 120 15 15 chr13 71510141 71510274 -30362895 - FLAM_C SINE Alu 0 133 1 28 0 0 0 chr13 71512486 71512514 -30360655 + AT_rich Low_complexity Low_complexity 1 28 0 906 111 0 14 chr13 71512858 71513002 -30360167 - L1PA14 LINE L1 -2 6159 6018 24 0 0 0 chr13 71513552 71513576 -30359593 + AT_rich Low_complexity Low_complexity 1 24 0 822 283 21 8 chr13 71513784 71514024 -30359145 + MLT1C LTR MaLR 225 467 0 282 196 0 0 chr13 71514024 71514075 -30359094 + MLT1C-int LTR MaLR 1 51 -1320 * 969 168 64 142 chr13 71514073 71514177 -30358992 - MLT1C-int LTR MaLR -1039 332 221 309 143 0 0 chr13 71514177 71514226 -30358943 + MADE1 DNA Mariner 31 79 -1 969 168 64 142 chr13 71514226 71514418 -30358751 - MLT1C-int LTR MaLR -1150 221 15 562 231 79 121 chr13 71514421 71514711 -30358458 - MLT1C LTR MaLR -109 358 81 666 219 7 7 chr13 71514963 71515109 -30358060 + FRAM SINE Alu 23 168 -8 1373 109 54 14 chr13 71516151 71516372 -30356797 + MER30 DNA MER1_type 1 230 0 2106 118 3 0 chr13 71517162 71517451 -30355718 + AluSg SINE Alu 1 290 -20 21 36 0 0 chr13 71517676 71517704 -30355465 + AT_rich Low_complexity Low_complexity 1 28 0 250 303 176 7 chr13 71517964 71518144 -30355025 + MIR SINE MIR 38 249 -13 28 29 0 0 chr13 71518397 71518432 -30354737 + AT_rich Low_complexity Low_complexity 1 35 0 3083 201 42 12 chr13 71518463 71519823 -30353346 + L1MC3 LINE L1 4898 6332 -1 23 0 0 0 chr13 71523793 71523816 -30349353 + AT_rich Low_complexity Low_complexity 1 23 0 270 95 0 0 chr13 71524233 71524275 -30348894 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr13 71524581 71524602 -30348567 + AT_rich Low_complexity Low_complexity 1 21 0 237 178 0 0 chr13 71528571 71528616 -30344553 + (TATG)n Simple_repeat Simple_repeat 3 47 0 24 53 0 0 chr13 71528704 71528742 -30344427 + AT_rich Low_complexity Low_complexity 1 38 0 31 68 0 0 chr13 71531525 71531584 -30341585 + AT_rich Low_complexity Low_complexity 1 59 0 227 30 0 30 chr13 71533264 71533297 -30339872 + (TTA)n Simple_repeat Simple_repeat 3 34 0 1418 190 0 22 chr13 71533302 71533570 -30339599 - AluJo SINE Alu -30 282 21 21 0 0 0 chr13 71533570 71533591 -30339578 + AT_rich Low_complexity Low_complexity 1 21 0 988 110 84 13 chr13 71533591 71533745 -30339424 - AluSg/x SINE Alu -24 286 122 35 0 0 0 chr13 71534637 71534672 -30338497 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 71536129 71536154 -30337015 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr13 71537561 71537604 -30335565 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr13 71538663 71538692 -30334477 + AT_rich Low_complexity Low_complexity 1 29 0 204 341 144 0 chr13 71538747 71538879 -30334290 - MIR SINE MIR -56 206 56 469 238 16 8 chr13 71539175 71539352 -30333817 + MER47B DNA MER2_type 2 227 -191 287 197 98 0 chr13 71539352 71539413 -30333756 + MER1A DNA MER1_type 1 67 -460 2122 100 3 7 chr13 71539413 71539703 -30333466 + AluSg SINE Alu 1 289 -21 3111 137 13 6 chr13 71539735 71540210 -30332959 + MER1A DNA MER1_type 52 529 0 1081 166 47 0 chr13 71540210 71540396 -30332773 + MER47B DNA MER2_type 220 414 -4 1014 142 30 10 chr13 71541618 71541815 -30331354 - L1MA4 LINE L1 -13 6287 6087 209 185 0 77 chr13 71542071 71542136 -30331033 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 2742 199 38 41 chr13 71542406 71542741 -30330428 - MER82 DNA MER2_type -1 652 318 204 97 0 0 chr13 71542741 71542772 -30330397 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2742 199 38 41 chr13 71542772 71543089 -30330080 - MER82 DNA MER2_type -335 318 2 1293 196 85 47 chr13 71543822 71544164 -30329005 + MLT2F LTR ERVL 307 661 -2 29 47 0 0 chr13 71544219 71544262 -30328907 + AT_rich Low_complexity Low_complexity 1 43 0 2134 110 49 26 chr13 71544944 71545289 -30327880 - THE1A LTR MaLR 0 355 3 183 156 0 0 chr13 71545329 71545361 -30327808 + (TA)n Simple_repeat Simple_repeat 1 32 0 363 96 0 0 chr13 71545375 71545427 -30327742 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 992 173 0 17 chr13 71545427 71545600 -30327569 - AluSg/x SINE Alu -23 287 118 4231 72 14 0 chr13 71546118 71546686 -30326483 - L1PA8 LINE L1 -13 6159 5584 22 0 0 0 chr13 71547260 71547282 -30325887 + AT_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr13 71547496 71547554 -30325615 + AT_rich Low_complexity Low_complexity 1 58 0 234 0 0 0 chr13 71547666 71547692 -30325477 + (GA)n Simple_repeat Simple_repeat 2 27 0 503 302 83 6 chr13 71547692 71547861 -30325308 - MIR SINE MIR -79 183 2 22 0 0 0 chr13 71548379 71548401 -30324768 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 71548500 71548528 -30324641 + AT_rich Low_complexity Low_complexity 1 28 0 2088 122 3 7 chr13 71550323 71550619 -30322550 - AluSc SINE Alu -14 295 1 198 71 0 0 chr13 71551595 71551623 -30321546 + (CA)n Simple_repeat Simple_repeat 2 29 0 215 375 12 0 chr13 71551962 71552042 -30321127 - L2 LINE L2 -195 3077 2997 1954 133 0 4 chr13 71552614 71552926 -30320243 - AluSx SINE Alu 0 315 5 198 71 0 0 chr13 71553284 71553312 -30319857 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 22 56 0 0 chr13 71554848 71554884 -30318285 + AT_rich Low_complexity Low_complexity 1 36 0 1008 199 22 92 chr13 71555056 71555327 -30317842 + MER41C LTR ERV1 2 253 -301 * 2791 188 4 2 chr13 71555316 71555822 -30317347 + MER41B LTR ERV1 129 635 0 865 318 39 0 chr13 71555822 71556054 -30317115 - MER119 DNA MER1_type -342 241 1 319 236 96 90 chr13 71556586 71556764 -30316405 + MLT1H1 LTR MaLR 1 179 -376 408 237 116 52 chr13 71557109 71557282 -30315887 + LTR40a LTR ERVL 17 200 -319 * 491 285 107 63 chr13 71557261 71557644 -30315525 + LTR40a LTR ERVL 120 519 0 21 36 0 0 chr13 71559531 71559559 -30313610 + AT_rich Low_complexity Low_complexity 1 28 0 250 230 11 11 chr13 71560303 71560390 -30312779 + (TA)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr13 71560487 71560508 -30312661 + AT_rich Low_complexity Low_complexity 1 21 0 2027 125 90 3 chr13 71560598 71560975 -30312194 + L1MA8 LINE L1 5880 6289 -2 2292 96 3 0 chr13 71561821 71562122 -30311047 + AluSc SINE Alu 1 302 -7 23 33 0 0 chr13 71564039 71564069 -30309100 + AT_rich Low_complexity Low_complexity 1 30 0 371 317 66 26 chr13 71564154 71564381 -30308788 - MIR SINE MIR -25 237 2 194 292 73 84 chr13 71564607 71564785 -30308384 + MIR SINE MIR 84 259 -3 431 213 21 0 chr13 71566457 71566551 -30306618 + Tigger7 DNA MER2_type 2492 2587 0 1979 126 13 3 chr13 71566696 71566997 -30306172 + AluY SINE Alu 1 304 -7 385 206 0 0 chr13 71568396 71568473 -30304696 + L1MB7 LINE L1 5520 5596 -574 1171 132 21 0 chr13 71568473 71568662 -30304507 - MER75B DNA T2_type 0 243 51 393 200 0 0 chr13 71569086 71569151 -30304018 - MER75B DNA T2_type -173 70 6 2311 211 13 26 chr13 71569184 71569720 -30303449 + L1MB7 LINE L1 5632 6160 -24 21 71 0 0 chr13 71569739 71569781 -30303388 + AT_rich Low_complexity Low_complexity 1 42 0 394 370 62 0 chr13 71570279 71570490 -30302679 - MIR SINE MIR -34 228 5 228 215 0 31 chr13 71570492 71570557 -30302612 + (TA)n Simple_repeat Simple_repeat 1 63 0 261 0 0 0 chr13 71571644 71571673 -30301496 + (CA)n Simple_repeat Simple_repeat 1 29 0 7951 34 6 2 chr13 71574279 71576002 -30297167 + L1PA5 LINE L1 4419 6150 -4 2367 64 7 0 chr13 71576667 71576962 -30296207 - AluY SINE Alu -14 297 1 267 268 12 0 chr13 71577289 71577371 -30295798 - L1ME2 LINE L1 -17 6147 6065 324 286 47 18 chr13 71577390 71577561 -30295608 - L1MEc LINE L1 -5007 2115 1940 792 210 11 45 chr13 71577567 71577743 -30295426 - FAM SINE Alu 0 49 1 315 293 102 18 chr13 71577797 71577964 -30295205 - L1MEc LINE L1 -5221 1720 1540 328 296 60 5 chr13 71577970 71578169 -30295000 - L1MEc LINE L1 -4888 1535 1326 2145 131 49 9 chr13 71580744 71581094 -30292075 - THE1B LTR MaLR 0 364 1 9849 122 30 27 chr13 71581094 71582669 -30290500 - THE1B-int LTR MaLR 0 1580 1 2262 126 43 0 chr13 71582669 71583018 -30290151 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr13 71583115 71583143 -30290026 + AT_rich Low_complexity Low_complexity 1 28 0 1445 87 16 40 chr13 71583396 71583486 -30289683 - L1M1 LINE L1 -803 5501 5410 2139 129 16 35 chr13 71583486 71583857 -30289312 - THE1B LTR MaLR 0 364 1 1445 87 16 40 chr13 71583857 71584019 -30289150 - L1M1 LINE L1 -894 5410 5255 6526 195 147 19 chr13 71584710 71586266 -30286903 + MER52A LTR ERV1 1 1755 0 946 313 85 58 chr13 71586622 71586923 -30286246 + L2 LINE L2 2404 2695 -618 5760 159 60 24 chr13 71586923 71588112 -30285057 - Tigger3b DNA MER2_type 0 1231 1 946 313 85 58 chr13 71588112 71588684 -30284485 + L2 LINE L2 2695 3304 -9 33 66 0 0 chr13 71588901 71588962 -30284207 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr13 71589531 71589561 -30283608 + AT_rich Low_complexity Low_complexity 1 30 0 231 393 62 36 chr13 71590364 71590812 -30282357 - L2 LINE L2 -381 2933 2474 180 264 170 47 chr13 71590823 71590929 -30282240 - L2 LINE L2 0 3313 3195 408 353 97 30 chr13 71591041 71591579 -30281590 - L2 LINE L2 -935 2379 1806 217 299 15 0 chr13 71591622 71591689 -30281480 - MIR SINE MIR -114 148 81 218 156 22 0 chr13 71591864 71591909 -30281260 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 28 48 0 0 chr13 71593453 71593495 -30279674 + AT_rich Low_complexity Low_complexity 1 42 0 458 352 81 24 chr13 71593659 71594068 -30279101 + L2 LINE L2 2476 2907 -407 917 240 90 35 chr13 71594532 71594780 -30278389 + MLT1E1 LTR MaLR 13 287 -367 8915 37 1 0 chr13 71594780 71596641 -30276528 - L1PA4 LINE L1 0 6155 4296 917 240 90 35 chr13 71596641 71596738 -30276431 + MLT1E1 LTR MaLR 287 377 -277 1656 226 22 3 chr13 71596745 71597116 -30276053 + L1MB8 LINE L1 5503 5880 -298 1116 174 4 53 chr13 71597121 71597386 -30275783 - L1P LINE L1 -1247 4899 4648 655 161 44 7 chr13 71597387 71597524 -30275645 + L1PA15 LINE L1 6024 6165 0 1244 225 7 0 chr13 71597524 71597804 -30275365 + L1MB8 LINE L1 5874 6155 -23 248 217 59 87 chr13 71597819 71597986 -30275183 - MLT1J LTR MaLR -29 421 263 24 0 0 0 chr13 71599307 71599331 -30273838 + AT_rich Low_complexity Low_complexity 1 24 0 192 40 0 0 chr13 71600489 71600514 -30272655 + (TC)n Simple_repeat Simple_repeat 1 25 0 1904 89 4 21 chr13 71600514 71600795 -30272374 - AluY SINE Alu -35 276 1 1655 183 34 3 chr13 71600906 71601201 -30271968 - AluJb SINE Alu -8 304 1 24 32 0 0 chr13 71601252 71601283 -30271886 + AT_rich Low_complexity Low_complexity 1 31 0 285 209 0 0 chr13 71601388 71601455 -30271714 + (CA)n Simple_repeat Simple_repeat 2 68 0 402 128 32 0 chr13 71601721 71601815 -30271354 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 31 0 0 0 chr13 71602409 71602440 -30270729 + AT_rich Low_complexity Low_complexity 1 31 0 2097 308 155 79 chr13 71603378 71604385 -30268784 + L2 LINE L2 321 1251 -2063 534 143 25 2 chr13 71604385 71604486 -30268683 - L1MB2 LINE L1 -8 6175 6051 2097 308 155 79 chr13 71604486 71605484 -30267685 + L2 LINE L2 1251 2585 -729 566 259 130 5 chr13 71605492 71605677 -30267492 + MER3 DNA MER1_type 2 209 0 2233 109 0 0 chr13 71605709 71606012 -30267157 - AluSq SINE Alu -10 303 1 2624 254 88 16 chr13 71606020 71606944 -30266225 - L1MB7 LINE L1 0 6184 5197 365 329 68 36 chr13 71606963 71607243 -30265926 + L2 LINE L2 3025 3313 0 21 0 0 0 chr13 71607915 71607936 -30265233 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr13 71608428 71608454 -30264715 + AT_rich Low_complexity Low_complexity 1 26 0 225 157 20 39 chr13 71608821 71608872 -30264297 + GA-rich Low_complexity Low_complexity 3 52 0 22 0 0 0 chr13 71608917 71608939 -30264230 + AT_rich Low_complexity Low_complexity 1 22 0 1589 155 49 7 chr13 71609128 71609412 -30263757 + AluSx SINE Alu 1 296 -16 24 32 0 0 chr13 71609796 71609827 -30263342 + AT_rich Low_complexity Low_complexity 1 31 0 327 239 43 68 chr13 71611642 71611759 -30261410 - L2 LINE L2 0 3313 3200 1752 153 48 43 chr13 71612072 71612445 -30260724 + THE1C LTR MaLR 1 375 0 1301 203 32 0 chr13 71612479 71612730 -30260439 - Tigger2 DNA MER2_type 0 2718 2460 3780 170 63 6 chr13 71612789 71613499 -30259670 - Tigger2 DNA MER2_type -1967 751 1 1472 158 4 37 chr13 71613499 71613770 -30259399 - Tigger2a DNA MER2_type -171 263 2 30 0 0 0 chr13 71613878 71613908 -30259261 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 71615068 71615089 -30258080 + AT_rich Low_complexity Low_complexity 1 21 0 290 310 11 11 chr13 71616448 71616535 -30256634 + MIR3 SINE MIR 105 191 -17 24 0 0 0 chr13 71616638 71616662 -30256507 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 71616720 71616749 -30256420 + AT_rich Low_complexity Low_complexity 1 29 0 2349 57 3 10 chr13 71617140 71617437 -30255732 + AluY SINE Alu 1 295 -16 3684 174 28 3 chr13 71617462 71617970 -30255199 - L1MA9 LINE L1 -6 6306 5773 351 0 0 0 chr13 71617970 71618009 -30255160 + (TG)n Simple_repeat Simple_repeat 2 40 0 3684 174 28 3 chr13 71618009 71618228 -30254941 - L1MA9 LINE L1 -539 5773 5561 23 0 0 0 chr13 71618451 71618474 -30254695 + AT_rich Low_complexity Low_complexity 1 23 0 1356 275 34 18 chr13 71618894 71619330 -30253839 - MER82 DNA MER2_type -10 643 201 656 254 29 0 chr13 71619778 71619916 -30253253 - MER82 DNA MER2_type -510 143 2 28 0 0 0 chr13 71620061 71620089 -30253080 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr13 71620608 71620634 -30252535 + AT_rich Low_complexity Low_complexity 1 26 0 5068 191 29 26 chr13 71621290 71622619 -30250550 - L1MC1 LINE L1 -8 6325 4984 1668 170 79 17 chr13 71622974 71623327 -30249842 + THE1C LTR MaLR 1 375 0 8792 149 36 30 chr13 71623327 71624897 -30248272 + THE1C-int LTR MaLR 1 1580 0 1589 178 55 27 chr13 71624897 71625262 -30247907 + THE1C LTR MaLR 1 375 0 237 200 0 0 chr13 71625574 71625614 -30247555 - 5S rRNA rRNA -81 40 1 26 50 0 0 chr13 71626018 71626058 -30247111 + AT_rich Low_complexity Low_complexity 1 40 0 35 41 0 0 chr13 71626435 71626484 -30246685 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr13 71626659 71626694 -30246475 + AT_rich Low_complexity Low_complexity 1 35 0 1415 200 12 0 chr13 71626694 71626939 -30246230 + L1PA15-16 LINE L1 5 252 -6597 2057 188 34 29 chr13 71626939 71627487 -30245682 + MLT2A2 LTR ERVL 1 552 -2 12373 181 25 48 chr13 71627492 71629995 -30243174 + L1PA15-16 LINE L1 251 2696 -4153 5840 8 0 3 chr13 71631411 71632073 -30241096 - L1HS LINE L1 0 6155 5496 194 355 14 50 chr13 71632527 71632668 -30240501 + MIR SINE MIR 15 150 -112 2301 193 57 32 chr13 71634259 71634860 -30238309 - L1MC2 LINE L1 -11 6333 5718 1907 212 65 21 chr13 71635027 71635674 -30237495 - L1MC2 LINE L1 -624 5720 5055 5451 226 20 48 chr13 71635779 71637815 -30235354 + L1PA15-16 LINE L1 2651 4627 -2222 360 279 45 13 chr13 71637827 71637981 -30235188 - MER104 DNA Tc2 -21 159 1 389 333 35 0 chr13 71638152 71638296 -30234873 + MIR SINE MIR 40 188 -74 308 311 34 7 chr13 71638309 71638457 -30234712 + Charlie2 DNA MER1_type 8 159 -2623 1666 256 92 36 chr13 71638596 71639547 -30233622 + Charlie2 DNA MER1_type 1858 2862 0 2250 119 0 0 chr13 71639618 71639930 -30233239 + AluSq SINE Alu 1 312 -1 298 271 85 42 chr13 71639991 71640109 -30233060 - MIR SINE MIR -110 152 30 654 206 0 22 chr13 71640291 71640427 -30232742 + FLAM_C SINE Alu 1 133 0 1242 177 40 12 chr13 71640431 71640680 -30232489 + AluJb SINE Alu 1 256 -56 397 144 24 16 chr13 71640711 71640836 -30232333 + (TA)n Simple_repeat Simple_repeat 1 126 0 2360 72 0 7 chr13 71641576 71641883 -30231286 + AluY SINE Alu 1 305 -6 2941 175 11 5 chr13 71641944 71642498 -30230671 + L1PA15 LINE L1 5609 6165 0 328 286 11 11 chr13 71642583 71642674 -30230495 - L2 LINE L2 -2 3311 3221 2104 106 0 0 chr13 71642712 71643029 -30230140 + AluSx SINE Alu 3 319 0 187 275 25 25 chr13 71643178 71643258 -30229911 + MIR SINE MIR 159 238 -24 21 36 0 0 chr13 71643447 71643475 -30229694 + AT_rich Low_complexity Low_complexity 1 28 0 282 160 21 21 chr13 71643519 71643613 -30229556 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1848 167 10 6 chr13 71644851 71645162 -30228007 + AluJo SINE Alu 1 312 0 337 246 36 9 chr13 71646472 71646582 -30226587 + CT-rich Low_complexity Low_complexity 2 114 0 1786 140 43 10 chr13 71646596 71646896 -30226273 + AluSx SINE Alu 3 312 0 228 148 33 16 chr13 71646942 71647003 -30226166 + (TA)n Simple_repeat Simple_repeat 2 63 0 2560 199 8 10 chr13 71647201 71647699 -30225470 - LOR1a LTR ERV1 0 497 1 1758 118 4 0 chr13 71649169 71649432 -30223737 - L1PA4 LINE L1 -3 6152 5889 43217 43 5 1 chr13 71649537 71655541 -30217628 - L1PA4 LINE L1 -128 6027 1 23 0 0 0 chr13 71656984 71657007 -30216162 + AT_rich Low_complexity Low_complexity 1 23 0 291 311 98 49 chr13 71657749 71657932 -30215237 + MIR SINE MIR 1 192 -70 674 210 57 52 chr13 71657933 71658162 -30215007 - MER106A DNA MER1_type 0 236 7 21 49 0 49 chr13 71658288 71658349 -30214820 + AT_rich Low_complexity Low_complexity 1 58 0 320 294 28 28 chr13 71658896 71659076 -30214093 + L1MEd LINE L1 1043 1222 -4897 2247 108 3 0 chr13 71659721 71660028 -30213141 + AluSc SINE Alu 1 308 -1 21 0 0 0 chr13 71660361 71660382 -30212787 + AT_rich Low_complexity Low_complexity 1 21 0 319 229 0 0 chr13 71660502 71660563 -30212606 - Tigger1 DNA MER2_type 0 2418 2358 695 212 15 0 chr13 71660564 71660696 -30212473 + AluJo SINE Alu 1 134 -178 8091 149 37 16 chr13 71660712 71661513 -30211656 - Tigger1 DNA MER2_type -975 1443 660 3198 141 24 4 chr13 71661513 71662058 -30211111 - LTR38 LTR ERV1 0 556 1 8091 149 37 16 chr13 71662058 71662368 -30210801 - Tigger1 DNA MER2_type -1758 660 358 1752 163 10 3 chr13 71662368 71662669 -30210500 + AluJo SINE Alu 1 303 -9 8091 149 37 16 chr13 71662669 71662968 -30210201 - Tigger1 DNA MER2_type -2060 358 3 35 0 0 0 chr13 71663267 71663302 -30209867 + AT_rich Low_complexity Low_complexity 1 35 0 7441 23 0 0 chr13 71663666 71664552 -30208617 - L1P1 LINE L1 -985 5161 4276 4284 27 2 3 chr13 71664552 71665199 -30207970 + L1P1 LINE L1 5141 5786 -369 23 0 0 0 chr13 71666767 71666790 -30206379 + AT_rich Low_complexity Low_complexity 1 23 0 250 293 111 52 chr13 71668943 71669404 -30203765 - HAL1 LINE L1 -867 1640 1153 10426 171 31 5 chr13 71669791 71672709 -30200460 - L1PA13 LINE L1 0 6163 3177 2762 158 104 96 chr13 71672711 71673479 -30199690 + MER52C LTR ERV1 505 1278 0 21183 138 34 64 chr13 71673479 71677260 -30195909 + MER52C-int LTR ERV1 2 3669 -3422 1295 259 83 94 chr13 71677447 71677949 -30195220 - L1MEc LINE L1 -5522 874 383 180 0 0 0 chr13 71677949 71677969 -30195200 + (TC)n Simple_repeat Simple_repeat 2 21 0 1295 259 83 94 chr13 71677969 71678304 -30194865 - L1MEc LINE L1 -6013 383 46 34 72 0 0 chr13 71678515 71678584 -30194585 + AT_rich Low_complexity Low_complexity 1 69 0 269 303 101 48 chr13 71678593 71678947 -30194222 + L1ME2 LINE L1 2864 3198 -2948 270 95 0 0 chr13 71678947 71678989 -30194180 + (TG)n Simple_repeat Simple_repeat 1 42 0 269 303 101 48 chr13 71678989 71679837 -30193332 + L1ME2 LINE L1 3198 4130 -2016 22 35 0 0 chr13 71679929 71679958 -30193211 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 71680938 71680973 -30192196 + AT_rich Low_complexity Low_complexity 1 35 0 513 318 41 33 chr13 71681315 71681560 -30191609 - MIR SINE MIR -14 248 2 10367 247 29 5 chr13 71682601 71684941 -30188228 - ERVL LTR ERVL -1119 4645 2251 24 32 0 0 chr13 71684972 71685003 -30188166 + AT_rich Low_complexity Low_complexity 1 31 0 1234 293 57 35 chr13 71685003 71686109 -30187060 + L1ME2 LINE L1 4969 6097 -67 2220 82 0 0 chr13 71686124 71686406 -30186763 + AluSc SINE Alu 1 282 -27 25 31 0 0 chr13 71686512 71686544 -30186625 + AT_rich Low_complexity Low_complexity 1 32 0 198 156 0 0 chr13 71686770 71686815 -30186354 + (TA)n Simple_repeat Simple_repeat 1 45 0 312 363 124 37 chr13 71687254 71687898 -30185271 + L2 LINE L2 1011 1710 -1604 261 274 36 12 chr13 71687964 71688048 -30185121 + L2 LINE L2 2616 2701 -613 344 320 16 8 chr13 71688057 71688182 -30184987 + L2 LINE L2 3188 3313 0 21 36 0 0 chr13 71688448 71688476 -30184693 + AT_rich Low_complexity Low_complexity 1 28 0 1678 180 7 7 chr13 71688791 71689086 -30184083 - MLT1A1 LTR MaLR -50 315 21 2369 57 44 0 chr13 71689087 71689385 -30183784 + AluY SINE Alu 1 311 0 22 0 0 0 chr13 71689385 71689407 -30183762 + AT_rich Low_complexity Low_complexity 1 22 0 1832 28 0 0 chr13 71689512 71689730 -30183439 - L1PA5 LINE L1 -4 6150 5933 21 0 0 0 chr13 71690980 71691001 -30182168 + AT_rich Low_complexity Low_complexity 1 21 0 719 223 80 56 chr13 71691693 71691944 -30181225 - MLT1F1 LTR MaLR -6 561 305 284 263 0 0 chr13 71691950 71692026 -30181143 + MLT1F1 LTR MaLR 491 566 -1 353 303 39 8 chr13 71692033 71692279 -30180890 + MLT1F1-int LTR MaLR 4 376 -995 771 340 85 57 chr13 71692344 71693118 -30180051 + ERVL LTR ERVL 2680 3475 -2289 2062 181 62 5 chr13 71693158 71693579 -30179590 - Tigger2 DNA MER2_type -1 2717 2273 294 209 45 15 chr13 71693569 71693636 -30179533 - Tigger2 DNA MER2_type -2649 69 1 * 253 253 13 38 chr13 71693636 71693715 -30179454 + LTR33 LTR ERVL 444 520 -1 2298 190 0 8 chr13 71694514 71694988 -30178181 - L1 LINE L1 -1388 4758 4289 1361 130 81 29 chr13 71695527 71695773 -30177396 + THE1B LTR MaLR 1 259 -105 199 439 53 8 chr13 71696009 71696141 -30177028 - L2 LINE L2 -46 3226 3089 1342 119 63 0 chr13 71696384 71696736 -30176433 - L1P4 LINE L1 -671 5497 5131 198 0 0 0 chr13 71697110 71697132 -30176037 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 30 45 0 0 chr13 71697712 71697756 -30175413 + AT_rich Low_complexity Low_complexity 1 44 0 21 95 0 0 chr13 71698385 71698448 -30174721 + AT_rich Low_complexity Low_complexity 1 63 0 1882 170 20 11 chr13 71698549 71698907 -30174262 + MER47A DNA MER2_type 6 366 0 409 277 96 12 chr13 71699342 71699508 -30173661 + MLT1A1 LTR MaLR 1 180 -185 236 171 0 0 chr13 71699506 71699547 -30173622 + MLT2D LTR ERVL 374 414 0 * 21 0 0 0 chr13 71699737 71699758 -30173411 + AT_rich Low_complexity Low_complexity 1 21 0 3543 115 2 4 chr13 71700585 71701097 -30172072 - MER9 LTR ERVK 0 511 1 682 298 104 22 chr13 71701521 71702155 -30171014 + L1ME3A LINE L1 3047 3732 -2414 621 222 14 35 chr13 71702194 71702338 -30170831 + Tigger7 DNA MER2_type 2 142 -563 625 262 14 0 chr13 71702443 71702588 -30170581 + Tigger7 DNA MER2_type 121 267 -466 450 189 11 11 chr13 71702594 71702684 -30170485 + Tigger7 DNA MER2_type 2401 2490 -1 1885 141 7 3 chr13 71702788 71703085 -30170084 + AluSx SINE Alu 10 307 -5 212 119 0 48 chr13 71703153 71703195 -30169974 + (CAGAGA)n Simple_repeat Simple_repeat 1 40 0 250 212 80 62 chr13 71703308 71703421 -30169748 + L1ME3A LINE L1 3849 3963 -2183 303 265 53 17 chr13 71703478 71703617 -30169552 + L1ME3A LINE L1 5536 5674 -490 423 253 90 24 chr13 71703744 71703910 -30169259 + L1ME3A LINE L1 5987 6163 -7 395 313 7 13 chr13 71704135 71704285 -30168884 - MER52A LTR ERV1 0 1755 1607 1767 60 4 78 chr13 71754770 71755038 -30118131 + AluY SINE Alu 50 297 -14 744 243 101 36 chr13 71755038 71755126 -30118043 + L1ME1 LINE L1 5035 5116 -1050 1301 197 80 14 chr13 71755126 71755415 -30117754 + AluSx SINE Alu 2 309 -3 744 243 101 36 chr13 71755415 71755717 -30117452 + L1ME1 LINE L1 5116 5446 -720 859 254 21 60 chr13 71755721 71756005 -30117164 + MER74A LTR ERVL 3 275 -283 1210 273 82 45 chr13 71756091 71756673 -30116496 + L1ME1 LINE L1 5458 6061 -105 739 255 171 20 chr13 71757791 71758136 -30115033 + MER57B LTR ERV1 1 397 -37 232 188 50 0 chr13 71758224 71758304 -30114865 + (TA)n Simple_repeat Simple_repeat 1 84 0 444 268 6 12 chr13 71758322 71758490 -30114679 + (TA)n Simple_repeat Simple_repeat 1 167 0 1998 179 10 48 chr13 71758798 71759352 -30113817 - L1MA5 LINE L1 -600 5700 5158 2628 179 13 71 chr13 71759355 71759976 -30113193 + L1MA5 LINE L1 5714 6298 -2 25 75 0 0 chr13 71760184 71760237 -30112932 + AT_rich Low_complexity Low_complexity 1 53 0 216 167 0 0 chr13 71760271 71760307 -30112862 + GA-rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr13 71760693 71760728 -30112441 + AT_rich Low_complexity Low_complexity 1 35 0 318 165 41 93 chr13 71760836 71760933 -30112236 - L1MB5 LINE L1 -169 6005 5914 1702 197 10 17 chr13 71761640 71762027 -30111142 - LOR1b LTR ERV1 0 461 121 352 313 104 60 chr13 71762322 71762773 -30110396 - L1MB5 LINE L1 -2037 5771 5301 40 37 0 0 chr13 71762826 71762880 -30110289 + AT_rich Low_complexity Low_complexity 1 54 0 297 254 0 90 chr13 71764289 71764423 -30108746 - HERVL40 LTR ERVL -1661 3993 3872 396 168 19 9 chr13 71764487 71764594 -30108575 + (TA)n Simple_repeat Simple_repeat 1 108 0 340 357 52 31 chr13 71764626 71765013 -30108156 - HERVL40 LTR ERVL -1466 3530 3136 349 335 90 42 chr13 71765089 71765727 -30107442 - HERVL40 LTR ERVL -2029 2967 2661 292 345 51 3 chr13 71766081 71766288 -30106881 - HERVL40 LTR ERVL -2755 2241 2021 385 175 0 0 chr13 71766288 71766351 -30106818 + MSTC LTR MaLR 1 63 -365 313 227 27 0 chr13 71766350 71766425 -30106744 + MSTC LTR MaLR 352 428 0 * 3950 258 123 35 chr13 71766425 71767866 -30105303 + MSTC-int LTR MaLR 1 1569 -82 1873 167 42 40 chr13 71767867 71768244 -30104925 - MSTB LTR MaLR -48 378 1 1762 142 28 0 chr13 71768244 71768526 -30104643 + MSTC LTR MaLR 137 426 -2 659 371 18 15 chr13 71768904 71769230 -30103939 - HERVL40 LTR ERVL -3413 1583 1257 302 314 121 59 chr13 71769231 71769604 -30103565 + ERVL LTR ERVL 2409 2804 -2960 288 347 65 0 chr13 71769837 71769961 -30103208 - HERVL40 LTR ERVL -2857 2673 2542 478 281 20 20 chr13 71769966 71770112 -30103057 - HERVL40 LTR ERVL -3925 1605 1460 465 267 17 14 chr13 71770125 71770295 -30102874 - L1MEc LINE L1 -4879 1505 1365 * 1159 296 104 6 chr13 71770286 71770775 -30102394 - L1MEc LINE L1 -5822 741 205 227 255 0 0 chr13 71770776 71770823 -30102346 - L1MEc LINE L1 -6313 250 204 201 39 0 0 chr13 71771769 71771795 -30101374 + (CAA)n Simple_repeat Simple_repeat 2 27 0 262 0 0 0 chr13 71771925 71771954 -30101215 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1903 116 18 0 chr13 71771954 71772230 -30100939 - AluSc SINE Alu -1 309 1 398 229 207 0 chr13 71772385 71772525 -30100644 - MER3 DNA MER1_type -1 208 40 910 123 22 0 chr13 71773376 71773514 -30099655 - LOR1a LTR ERV1 0 497 357 4039 111 24 6 chr13 71774937 71775604 -30097565 + L1PA8 LINE L1 4763 5434 -720 4934 93 16 4 chr13 71775735 71776468 -30096701 + L1PA8 LINE L1 5443 6183 0 391 357 51 20 chr13 71777198 71777492 -30095677 - L1ME LINE L1 -467 5703 5401 312 345 61 58 chr13 71777741 71778002 -30095167 - MIR SINE MIR 0 262 1 33 25 0 0 chr13 71778961 71779001 -30094168 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr13 71779522 71779546 -30093623 + AT_rich Low_complexity Low_complexity 1 24 0 230 221 29 0 chr13 71781756 71781824 -30091345 + L1MC4 LINE L1 6634 6703 -1339 26 50 0 0 chr13 71781918 71781958 -30091211 + AT_rich Low_complexity Low_complexity 1 40 0 2157 172 44 7 chr13 71782304 71782725 -30090444 - MSTB1 LTR MaLR 0 432 4 502 288 113 5 chr13 71782881 71783103 -30090066 - L1ME LINE L1 -1954 4192 3947 12883 32 5 22 chr13 71783237 71785621 -30087548 - L1PA4 LINE L1 -5 6150 3791 1811 138 0 27 chr13 71785730 71786026 -30087143 - AluSx SINE Alu -24 288 1 24 0 0 0 chr13 71786026 71786050 -30087119 + AT_rich Low_complexity Low_complexity 1 24 0 1918 119 11 0 chr13 71786089 71786358 -30086811 - AluSq SINE Alu -17 296 25 348 146 0 0 chr13 71786358 71786413 -30086756 - Alu SINE Alu -246 55 1 453 123 55 0 chr13 71786431 71786504 -30086665 - L1MC3 LINE L1 -25 7760 7684 384 281 60 6 chr13 71789045 71789212 -30083957 + LTR37B LTR ERV1 215 390 -78 308 246 0 0 chr13 71791818 71791887 -30081282 - MER94 DNA DNA -63 71 3 548 232 10 0 chr13 71792122 71792221 -30080948 + FLAM_A SINE Alu 1 100 -42 285 294 78 17 chr13 71792272 71792452 -30080717 + L1M4 LINE L1 3370 3560 -2586 2034 114 0 4 chr13 71792474 71792780 -30080389 + AluSc SINE Alu 1 305 0 186 103 0 0 chr13 71792943 71792972 -30080197 + (CA)n Simple_repeat Simple_repeat 2 30 0 303 373 24 16 chr13 71793026 71793152 -30080017 - L2 LINE L2 -9 3263 3137 407 296 102 27 chr13 71793463 71793649 -30079520 + MIR SINE MIR 37 236 -26 1777 136 16 31 chr13 71794263 71794580 -30078589 - L1MA8 LINE L1 -212 6079 5768 238 187 93 0 chr13 71794975 71795050 -30078119 + L1MCa LINE L1 1983 2064 -4362 * 257 300 0 0 chr13 71795025 71795115 -30078054 + L1MC4 LINE L1 6894 6983 -1339 249 292 0 0 chr13 71795035 71795124 -30078045 - L1MC4 LINE L1 -1339 6703 6615 * 22 0 0 0 chr13 71795508 71795530 -30077639 + AT_rich Low_complexity Low_complexity 1 22 0 2119 140 0 0 chr13 71796604 71796911 -30076258 - AluSg SINE Alu -3 307 1 356 322 110 52 chr13 71796925 71797388 -30075781 - L1MC4a LINE L1 -1333 6475 5986 814 305 58 38 chr13 71797427 71797949 -30075220 - L1MC4a LINE L1 -1914 5894 5363 359 79 254 0 chr13 71798112 71798175 -30074994 - MADE1 DNA Mariner 0 80 2 406 332 65 73 chr13 71798178 71798647 -30074522 - L2 LINE L2 -21 3292 2832 2540 57 0 0 chr13 71798647 71798948 -30074221 + AluY SINE Alu 1 301 -10 406 332 65 73 chr13 71798948 71799191 -30073978 - L2 LINE L2 -481 2832 2589 568 260 138 0 chr13 71799293 71799474 -30073695 - MIR SINE MIR -16 246 41 22 35 0 0 chr13 71799644 71799673 -30073496 + AT_rich Low_complexity Low_complexity 1 29 0 2481 214 8 108 chr13 71800448 71801269 -30071900 + L1MB7 LINE L1 5426 6164 -20 24 0 0 0 chr13 71801277 71801301 -30071868 + AT_rich Low_complexity Low_complexity 1 24 0 1758 172 17 0 chr13 71801666 71801963 -30071206 - MER1B DNA MER1_type -1 338 37 245 162 0 0 chr13 71802038 71802075 -30071094 - Alu SINE Alu -17 285 249 775 190 0 0 chr13 71802082 71802219 -30070950 - AluJo SINE Alu -175 137 1 233 147 0 0 chr13 71802244 71802278 -30070891 - Alu SINE Alu -262 38 5 2543 103 16 5 chr13 71802824 71803194 -30069975 - THE1C LTR MaLR -1 374 1 204 40 0 0 chr13 71803314 71803339 -30069830 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr13 71803438 71803460 -30069709 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1202 309 29 11 chr13 71803577 71803956 -30069213 + HERVL40 LTR ERVL 707 1092 -4438 1899 296 33 18 chr13 71803967 71804627 -30068542 + HERVL40 LTR ERVL 2905 3574 -1956 661 201 0 15 chr13 71804629 71804763 -30068406 + FLAM_C SINE Alu 1 132 -1 1795 316 105 7 chr13 71804981 71805696 -30067473 + HERVL40 LTR ERVL 3607 4391 -1139 384 283 103 64 chr13 71806349 71806738 -30066431 + MER89-int LTR ERV1 6081 6484 -317 734 210 51 11 chr13 71806775 71806951 -30066218 - MER53 DNA DNA -6 183 1 732 254 75 0 chr13 71806958 71807159 -30066010 + HERVL40 LTR ERVL 5315 5530 0 22 70 0 0 chr13 71808849 71808892 -30064277 + AT_rich Low_complexity Low_complexity 1 43 0 2096 116 0 55 chr13 71808894 71809222 -30063947 + AluSg SINE Alu 1 310 0 25 31 0 0 chr13 71809299 71809331 -30063838 + AT_rich Low_complexity Low_complexity 1 32 0 208 261 0 58 chr13 71810495 71810564 -30062605 + L2 LINE L2 3028 3092 -221 696 297 152 25 chr13 71810613 71811054 -30062115 + LTR33A LTR ERVL 25 521 -2 22 80 0 0 chr13 71811054 71811104 -30062065 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr13 71811648 71811684 -30061485 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr13 71812040 71812078 -30061091 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr13 71812995 71813018 -30060151 + AT_rich Low_complexity Low_complexity 1 23 0 2649 182 45 131 chr13 71813220 71814086 -30059083 - MER21A LTR ERV1 -6 925 134 351 181 47 134 chr13 71814065 71814192 -30058977 - MER21A LTR ERV1 -733 198 83 * 186 227 0 0 chr13 71814202 71814246 -30058923 + (TG)n Simple_repeat Simple_repeat 2 45 0 355 292 110 18 chr13 71814532 71814751 -30058418 + MER31-int LTR ERV1 1926 2164 -2772 957 263 40 88 chr13 71814946 71815698 -30057471 + MER31-int LTR ERV1 2359 3074 -1862 22 0 0 0 chr13 71815792 71815814 -30057355 + AT_rich Low_complexity Low_complexity 1 22 0 1127 123 26 0 chr13 71815849 71816044 -30057125 + L1MA7 LINE L1 6092 6291 0 6371 72 11 3 chr13 71816098 71817491 -30055678 - L1PA8A LINE L1 0 6131 4754 16518 140 12 7 chr13 71817614 71820406 -30052763 - L1PA8A LINE L1 -1591 4555 1750 33 73 0 0 chr13 71820438 71820506 -30052663 + AT_rich Low_complexity Low_complexity 1 68 0 3248 169 27 23 chr13 71820506 71821205 -30051964 - L1MA8 LINE L1 -10 6281 5580 270 81 0 0 chr13 71821210 71821247 -30051922 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 1914 242 61 91 chr13 71821267 71823559 -30049610 - L1 LINE L1 -3693 3474 1590 1263 226 149 28 chr13 71824419 71824808 -30048361 + MSTB2 LTR MaLR 22 457 0 23 54 0 0 chr13 71825067 71825104 -30048065 + AT_rich Low_complexity Low_complexity 1 37 0 1195 261 28 118 chr13 71825136 71825901 -30047268 + MER31-int LTR ERV1 3120 3815 -1121 808 254 97 35 chr13 71825920 71826003 -30047166 + MER31-int LTR ERV1 711 787 -4149 403 78 0 31 chr13 71826003 71826067 -30047102 - L1PA8 LINE L1 -8 6164 6103 808 254 97 35 chr13 71826067 71826271 -30046898 + MER31-int LTR ERV1 787 1016 -3920 746 179 0 20 chr13 71826355 71826506 -30046663 + MER67D LTR ERV1 1 148 -366 682 289 55 9 chr13 71826897 71827243 -30045926 + L1ME1 LINE L1 4401 4762 -1384 531 295 42 0 chr13 71827248 71827438 -30045731 + L1ME1 LINE L1 4808 5005 -1141 810 197 49 22 chr13 71827497 71827554 -30045615 + MER20 DNA MER1_type 32 86 -133 2484 130 50 22 chr13 71827554 71827970 -30045199 - MSTA LTR MaLR 0 428 1 810 197 49 22 chr13 71827970 71828095 -30045074 + MER20 DNA MER1_type 86 219 0 1241 270 112 35 chr13 71828095 71829003 -30044166 + L1ME1 LINE L1 5006 5981 -185 1738 184 18 3 chr13 71829077 71829403 -30043766 + Tigger3b DNA MER2_type 180 510 -721 233 221 105 42 chr13 71829980 71830075 -30043094 - HAL1 LINE L1 -829 1678 1578 1433 210 52 36 chr13 71830284 71830783 -30042386 + L1 LINE L1 3029 3535 -2611 * 12640 177 29 3 chr13 71830759 71832930 -30040239 + L1M1 LINE L1 12 2238 -5327 21 36 0 0 chr13 71833194 71833222 -30039947 + AT_rich Low_complexity Low_complexity 1 28 0 281 229 0 42 chr13 71833288 71833384 -30039785 - L1MC4 LINE L1 -1337 6705 6614 219 220 0 0 chr13 71833384 71833434 -30039735 + (TA)n Simple_repeat Simple_repeat 2 51 0 229 264 23 0 chr13 71833439 71833526 -30039643 + L1MC4 LINE L1 6615 6703 -1339 231 167 0 0 chr13 71833531 71833573 -30039596 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 68 0 0 chr13 71833601 71833645 -30039524 + AT_rich Low_complexity Low_complexity 1 44 0 810 218 41 15 chr13 71833689 71833955 -30039214 - L1MCa LINE L1 -4085 2479 2207 656 250 93 48 chr13 71833974 71834378 -30038791 - L1MCa LINE L1 -4435 2129 1615 3885 181 39 9 chr13 71834383 71835185 -30037984 - L1MA5 LINE L1 0 6300 5475 687 336 96 13 chr13 71835216 71835591 -30037578 - L1MCa LINE L1 -5639 406 1 24 53 0 0 chr13 71835729 71835767 -30037402 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr13 71835787 71835823 -30037346 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 71835984 71836005 -30037164 + AT_rich Low_complexity Low_complexity 1 21 0 4188 164 19 7 chr13 71836037 71836740 -30036429 + MER50 LTR ERV1 1 711 -23 2586 157 41 31 chr13 71836865 71837350 -30035819 + MER4B-int LTR ERV1 4127 4616 -2142 2006 165 58 3 chr13 71837351 71837714 -30035455 - MER4D-int LTR ERV1 -6143 615 233 330 98 0 0 chr13 71837880 71837931 -30035238 + (CAAAC)n Simple_repeat Simple_repeat 4 54 0 769 207 0 94 chr13 71837931 71838134 -30035035 - MER4D-int LTR ERV1 -6558 200 17 4339 159 77 20 chr13 71838154 71839008 -30034161 - MER4D LTR ERV1 0 903 1 21 0 0 0 chr13 71839427 71839448 -30033721 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 71840766 71840789 -30032380 + AT_rich Low_complexity Low_complexity 1 23 0 198 91 0 0 chr13 71840832 71840865 -30032304 + (TC)n Simple_repeat Simple_repeat 2 34 0 41 72 0 0 chr13 71842450 71842533 -30030636 + AT_rich Low_complexity Low_complexity 1 83 0 22 70 0 0 chr13 71842561 71842604 -30030565 + AT_rich Low_complexity Low_complexity 1 43 0 29 60 0 0 chr13 71842941 71842991 -30030178 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr13 71844000 71844021 -30029148 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr13 71844192 71844238 -30028931 + AT_rich Low_complexity Low_complexity 1 46 0 369 209 35 0 chr13 71845134 71845220 -30027949 - MLT1G1 LTR MaLR -506 89 1 844 172 62 48 chr13 71845490 71845644 -30027525 + MLT2C1 LTR ERVL 15 171 -226 440 331 41 0 chr13 71845644 71845813 -30027356 - MLT2C1 LTR ERVL -3 394 219 1541 109 84 49 chr13 71846785 71847069 -30026100 - AluSq SINE Alu -19 294 1 30 83 0 0 chr13 71847155 71847227 -30025942 + AT_rich Low_complexity Low_complexity 1 72 0 25 0 0 0 chr13 71847400 71847425 -30025744 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr13 71848821 71848846 -30024323 + AT_rich Low_complexity Low_complexity 1 25 0 2281 138 14 6 chr13 71848858 71849219 -30023950 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr13 71849230 71849252 -30023917 + AT_rich Low_complexity Low_complexity 1 22 0 231 263 126 32 chr13 71849715 71849810 -30023359 - MIR SINE MIR -27 235 132 5274 162 3 25 chr13 71849831 71850676 -30022493 - L1PA15 LINE L1 0 6165 5341 1919 126 7 52 chr13 71850676 71850986 -30022183 - AluSx SINE Alu -16 296 1 5274 162 3 25 chr13 71850986 71851266 -30021903 - L1PA15 LINE L1 -824 5341 5056 191 373 36 9 chr13 71851268 71851378 -30021791 - MIR SINE MIR -120 142 30 279 235 154 37 chr13 71851450 71851612 -30021557 + L1MC/D LINE L1 5092 5272 -874 303 242 102 51 chr13 71851634 71851791 -30021378 + L1MC/D LINE L1 5268 5432 -742 315 388 25 22 chr13 71851833 71852109 -30021060 + L1MC/D LINE L1 5536 5812 -547 23 78 0 0 chr13 71856115 71856166 -30017003 + AT_rich Low_complexity Low_complexity 1 51 0 277 338 61 40 chr13 71856689 71856917 -30016252 - MIR SINE MIR -25 237 5 21 36 0 0 chr13 71857205 71857233 -30015936 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr13 71858779 71858829 -30014340 + AT_rich Low_complexity Low_complexity 1 50 0 312 324 22 22 chr13 71859046 71859185 -30013984 - L1M4 LINE L1 -2660 3486 3348 21 71 0 0 chr13 71859872 71859914 -30013255 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr13 71860307 71860343 -30012826 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr13 71860371 71860393 -30012776 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr13 71860710 71860753 -30012416 + AT_rich Low_complexity Low_complexity 1 43 0 6741 69 2 1 chr13 71861705 71863193 -30009976 + L1PA7 LINE L1 4660 6147 -7 277 276 146 78 chr13 71863346 71863851 -30009318 + L1ME LINE L1 3508 4080 -2066 333 0 0 0 chr13 71863851 71863888 -30009281 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 276 146 78 chr13 71863888 71864117 -30009052 + L1ME LINE L1 4080 4292 -1854 23 33 0 0 chr13 71864126 71864156 -30009013 + AT_rich Low_complexity Low_complexity 1 30 0 5093 166 48 34 chr13 71864287 71866279 -30006890 + L1MA5A LINE L1 4288 6295 -2 198 71 0 0 chr13 71866419 71866447 -30006722 + (TG)n Simple_repeat Simple_repeat 2 29 0 250 330 9 0 chr13 71867126 71867232 -30005937 + L1ME LINE L1 5489 5595 -567 535 300 91 6 chr13 71867233 71867553 -30005616 + L1MEc LINE L1 1624 1970 -4426 621 231 41 28 chr13 71867626 71867839 -30005330 - MER61D LTR ERV1 -10 750 338 1796 283 94 37 chr13 71868168 71869586 -30003583 + L1MEc LINE L1 2058 3547 -2668 6151 155 41 15 chr13 71869586 71870092 -30003077 - Tigger3b DNA MER2_type -1800 1228 737 2023 153 0 0 chr13 71870092 71870399 -30002770 - AluSx SINE Alu -5 307 1 6151 155 41 15 chr13 71870399 71871089 -30002080 - Tigger3b DNA MER2_type -2291 737 1 1796 283 94 37 chr13 71871089 71871292 -30001877 + L1MEc LINE L1 3547 3737 -2478 775 268 79 68 chr13 71871359 71872269 -30000900 + L1MEc LINE L1 3880 4799 -1416 431 99 14 0 chr13 71872280 71872351 -30000818 - Alu SINE Alu -16 294 223 26 0 0 0 chr13 72072391 72072417 -29800752 + AT_rich Low_complexity Low_complexity 1 26 0 1611 248 108 19 chr13 72072422 72073588 -29799581 - L1MDa LINE L1 -4053 2487 1167 755 269 36 33 chr13 72073669 72074030 -29799139 - L1MDa LINE L1 -6145 395 34 251 241 0 0 chr13 72074168 72074222 -29798947 + LTR40c LTR ERVL 1 54 -411 433 212 76 17 chr13 72074350 72074468 -29798701 + LTR40b LTR ERVL 329 453 -9 1065 330 42 38 chr13 72074668 72075536 -29797633 - HERV16 LTR ERVL -3806 1190 249 2171 112 7 0 chr13 72075883 72076179 -29796990 - AluSx SINE Alu -14 298 1 5490 197 12 25 chr13 72076185 72077271 -29795898 + ERVL LTR ERVL 2086 3157 -2607 23 0 0 0 chr13 72077501 72077524 -29795645 + AT_rich Low_complexity Low_complexity 1 23 0 1610 167 46 135 chr13 72077538 72078125 -29795044 + LTR18B LTR ERVL 1 535 -79 2387 154 10 8 chr13 72078147 72078549 -29794620 + MER57A LTR ERV1 1 403 0 205 176 0 0 chr13 72078582 72078616 -29794553 + (ATGGTG)n Simple_repeat Simple_repeat 4 37 0 197 340 0 0 chr13 72078977 72079030 -29794139 + L2 LINE L2 2601 2653 -661 27 62 0 0 chr13 72080394 72080442 -29792727 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr13 72081060 72081088 -29792081 + AT_rich Low_complexity Low_complexity 1 28 0 570 338 138 27 chr13 72081451 72081901 -29791268 - L3 LINE CR1 -454 1123 624 26 0 0 0 chr13 72081901 72081927 -29791242 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr13 72082526 72082551 -29790618 + AT_rich Low_complexity Low_complexity 1 25 0 7422 39 0 0 chr13 72082636 72083729 -29789440 + L1PA4 LINE L1 5062 6154 -1 2041 135 0 7 chr13 72084863 72085167 -29788002 + AluSc SINE Alu 3 304 -5 1985 128 7 7 chr13 72086665 72086969 -29786200 + AluSx SINE Alu 1 304 -8 372 121 0 0 chr13 72087093 72087151 -29786018 + AluSg/x SINE Alu 180 237 -63 21 0 0 0 chr13 72088103 72088124 -29785045 + AT_rich Low_complexity Low_complexity 1 21 0 2041 130 0 0 chr13 72089479 72089778 -29783391 - AluSx SINE Alu -13 299 1 2896 177 56 7 chr13 72089839 72090197 -29782972 - MER6A DNA MER2_type -260 605 207 261 0 0 0 chr13 72090197 72090226 -29782943 + (CA)n Simple_repeat Simple_repeat 1 29 0 2896 177 56 7 chr13 72090226 72090443 -29782726 - MER6A DNA MER2_type -658 207 2 2130 109 0 3 chr13 72091379 72091686 -29781483 + AluSx SINE Alu 1 306 0 192 77 0 0 chr13 72091749 72091775 -29781394 + (TA)n Simple_repeat Simple_repeat 2 27 0 2518 181 7 0 chr13 72092307 72092766 -29780403 - L1PB4 LINE L1 -2 6154 5693 3413 26 2 1 chr13 72092866 72093406 -29779763 - L1P2 LINE L1 -483 5672 5132 2279 148 78 8 chr13 72093575 72093975 -29779194 + MSTA LTR MaLR 1 428 0 862 280 31 52 chr13 72094082 72094468 -29778701 - L1M4 LINE L1 -6121 421 44 266 204 23 45 chr13 72094534 72094622 -29778547 - LTR37B LTR ERV1 -53 415 330 471 186 25 138 chr13 72094654 72094929 -29778240 - LTR37B LTR ERV1 -144 324 81 2247 99 3 0 chr13 72095260 72095564 -29777605 - AluSq SINE Alu -8 305 1 2328 242 119 59 chr13 72096838 72096954 -29776215 + L1MC3 LINE L1 6508 6616 -1169 186 43 0 0 chr13 72096954 72096977 -29776192 + (CA)n Simple_repeat Simple_repeat 2 24 0 2328 242 119 59 chr13 72096977 72097923 -29775246 + L1MC3 LINE L1 6616 7634 -151 252 86 0 0 chr13 72100871 72100906 -29772263 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr13 72101981 72102002 -29771167 + AT_rich Low_complexity Low_complexity 1 21 0 461 202 0 0 chr13 72102207 72102311 -29770858 - L1MB3 LINE L1 0 6183 6080 22 0 0 0 chr13 72103276 72103298 -29769871 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 72103395 72103416 -29769753 + AT_rich Low_complexity Low_complexity 1 21 0 267 157 0 0 chr13 72104185 72104236 -29768933 + (TG)n Simple_repeat Simple_repeat 2 52 0 1715 270 39 35 chr13 72104831 72105453 -29767716 - MLT1E3 LTR MaLR 0 624 1 22 0 0 0 chr13 72105674 72105696 -29767473 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr13 72106291 72106313 -29766856 + (A)n Simple_repeat Simple_repeat 1 22 0 468 0 0 0 chr13 72106587 72106639 -29766530 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 21 0 0 0 chr13 72107429 72107450 -29765719 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 72108907 72108931 -29764238 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr13 72109490 72109532 -29763637 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr13 72109661 72109682 -29763487 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 72110742 72110762 -29762407 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr13 72110885 72110914 -29762255 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr13 72110957 72111013 -29762156 + AT_rich Low_complexity Low_complexity 1 56 0 565 66 44 0 chr13 72111859 72111950 -29761219 + AluS SINE Alu 1 95 -218 235 141 31 0 chr13 72112051 72112115 -29761054 + (TA)n Simple_repeat Simple_repeat 2 67 0 4513 179 41 33 chr13 72112306 72113261 -29759908 - L1PB4 LINE L1 -18 6138 5150 189 0 0 0 chr13 72113261 72113282 -29759887 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 4513 179 41 33 chr13 72113282 72113628 -29759541 - L1PB4 LINE L1 -1006 5150 4808 426 330 67 14 chr13 72113635 72114024 -29759145 + HERV16 LTR ERVL 1837 2268 -2728 22 70 0 0 chr13 72114029 72114072 -29759097 + AT_rich Low_complexity Low_complexity 1 43 0 503 141 0 0 chr13 72114129 72114207 -29758962 + AluS SINE Alu 1 78 -232 23 54 0 0 chr13 72114307 72114344 -29758825 + GC_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 72114357 72114377 -29758792 + (A)n Simple_repeat Simple_repeat 1 20 0 5993 54 3 3 chr13 72115345 72116101 -29757068 - L1PA8 LINE L1 0 6172 5417 21 0 0 0 chr13 72118467 72118488 -29754681 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 72120249 72120284 -29752885 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr13 72120507 72120536 -29752633 + AT_rich Low_complexity Low_complexity 1 29 0 22 80 0 0 chr13 72120646 72120696 -29752473 + AT_rich Low_complexity Low_complexity 1 50 0 1829 138 0 4 chr13 72120875 72121143 -29752026 - AluSx SINE Alu -45 267 1 1292 234 143 29 chr13 72121329 72121782 -29751387 - MLT1D LTR MaLR 0 505 1 2239 113 3 0 chr13 72121958 72122267 -29750902 - AluSq SINE Alu -1 312 3 28 29 0 0 chr13 72122370 72122405 -29750764 + AT_rich Low_complexity Low_complexity 1 35 0 3544 160 63 23 chr13 72122746 72123429 -29749740 + MER50 LTR ERV1 1 710 -24 285 143 0 20 chr13 72123432 72123481 -29749688 + MER50-int LTR ERV1 2 49 -7156 223 24 0 71 chr13 72123853 72123895 -29749274 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1508 118 4 34 chr13 72124427 72124664 -29748505 + AluSx SINE Alu 1 230 -82 228 35 0 0 chr13 72124688 72124717 -29748452 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 217 314 52 58 chr13 72125323 72125482 -29747687 - MIR SINE MIR -66 196 40 21 71 0 0 chr13 72125507 72125549 -29747620 + AT_rich Low_complexity Low_complexity 1 42 0 932 142 0 0 chr13 72125595 72125729 -29747440 - AluSq/x SINE Alu -178 134 1 21 36 0 0 chr13 72125861 72125889 -29747280 + AT_rich Low_complexity Low_complexity 1 28 0 2102 120 0 7 chr13 72126239 72126539 -29746630 + AluSx SINE Alu 3 300 -12 30 45 0 0 chr13 72128068 72128112 -29745057 + AT_rich Low_complexity Low_complexity 1 44 0 6049 52 3 4 chr13 72128191 72128967 -29744202 - L1PA4 LINE L1 -853 5293 4519 6890 42 3 6 chr13 72128967 72129831 -29743338 + L1PA4 LINE L1 5291 6153 -2 250 287 84 35 chr13 72130102 72130245 -29742924 - L1MEd LINE L1 -5967 152 3 703 168 0 70 chr13 72130454 72130597 -29742572 - AluJo SINE Alu -141 171 39 1847 178 0 7 chr13 72131579 72131882 -29741287 + AluJb SINE Alu 2 302 -10 22 0 0 0 chr13 72132015 72132037 -29741132 + AT_rich Low_complexity Low_complexity 1 22 0 266 250 15 0 chr13 72132085 72132153 -29741016 - L2 LINE L2 -1 3312 3244 6052 114 8 0 chr13 72132577 72133605 -29739564 - L1PA12 LINE L1 -2 6166 5132 1943 201 0 2 chr13 72133607 72134009 -29739160 + L1P LINE L1 4307 4707 -1439 302 255 0 69 chr13 72135084 72135186 -29737983 - L1MC4 LINE L1 -1334 6708 6614 2144 116 0 7 chr13 72135294 72135587 -29737582 + AluSc SINE Alu 1 291 -18 595 213 49 49 chr13 72136698 72136862 -29736307 + AluJo SINE Alu 105 268 -44 1945 132 3 7 chr13 72137342 72137629 -29735540 + AluSg1 SINE Alu 1 286 -23 294 254 31 8 chr13 72138378 72138508 -29734661 - L1 LINE L1 -1759 4387 4255 189 0 0 0 chr13 72138679 72138700 -29734469 + (T)n Simple_repeat Simple_repeat 1 21 0 2074 133 0 3 chr13 72138726 72139034 -29734135 + AluSx SINE Alu 1 307 -5 2292 77 30 0 chr13 72139428 72139725 -29733444 + AluY SINE Alu 1 306 -5 1100 144 11 0 chr13 72139826 72140006 -29733163 - AluSq SINE Alu -5 308 127 1240 243 73 71 chr13 72140011 72140452 -29732717 - L1 LINE L1 -2378 3768 3323 1756 131 3 54 chr13 72140452 72140766 -29732403 - AluSq SINE Alu 0 313 16 1240 243 73 71 chr13 72140766 72141187 -29731982 - L1 LINE L1 -2823 3323 2904 25 0 0 0 chr13 72141350 72141375 -29731794 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr13 72142639 72142672 -29730497 + AT_rich Low_complexity Low_complexity 1 33 0 1435 232 30 19 chr13 72142747 72143117 -29730052 - MLT1A2 LTR MaLR 0 374 1 643 308 74 49 chr13 72144012 72144541 -29728628 + L1MCc LINE L1 25 566 -5857 398 249 22 87 chr13 72144548 72144733 -29728436 + L1ME1 LINE L1 5988 6160 -6 1040 197 14 71 chr13 72144831 72145126 -29728043 + L1MA9 LINE L1 5917 6194 -118 363 141 16 0 chr13 72145116 72145180 -29727989 - L1 LINE L1 -1019 6546 6482 * 1940 182 57 5 chr13 72145183 72145551 -29727618 + MSTA LTR MaLR 1 387 -41 550 141 0 0 chr13 72145557 72145642 -29727527 - AluSg/x SINE Alu -12 300 216 45 34 0 0 chr13 72145800 72145859 -29727310 + AT_rich Low_complexity Low_complexity 1 59 0 8980 185 27 12 chr13 72145861 72149177 -29723992 - L1 LINE L1 -1720 5845 2477 1346 178 7 81 chr13 72149188 72149497 -29723672 - AluJb SINE Alu -20 292 7 2336 113 8 3 chr13 72149503 72149882 -29723287 - L1 LINE L1 -5071 2494 2114 * 6284 189 17 19 chr13 72149879 72151056 -29722113 - L1 LINE L1 -6368 1197 24 21 0 0 0 chr13 72151251 72151272 -29721897 + AT_rich Low_complexity Low_complexity 1 21 0 311 157 14 0 chr13 72151523 72151593 -29721576 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 1422 244 146 55 chr13 72151605 72152113 -29721056 + MLT2B3 LTR ERVL 1 554 0 4219 167 48 23 chr13 72152155 72153275 -29719894 + L1MA8 LINE L1 5026 6174 -117 1075 244 12 43 chr13 72153278 72153602 -29719567 - MLT1A2 LTR MaLR -26 348 35 508 27 27 14 chr13 72153602 72153676 -29719493 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 342 234 32 0 chr13 72153839 72153933 -29719236 - L1MDa LINE L1 -6426 114 18 3970 190 18 30 chr13 72153951 72154798 -29718371 - L1MC1 LINE L1 -5 6328 5492 266 286 11 87 chr13 72154924 72155109 -29718060 - MLT1H LTR MaLR -3 546 376 314 343 15 22 chr13 72155411 72155545 -29717624 + L2 LINE L2 2286 2418 -896 973 228 55 64 chr13 72155831 72156177 -29716992 + MLT2C1 LTR ERVL 3 345 -52 267 31 0 0 chr13 72156177 72156209 -29716960 + (TC)n Simple_repeat Simple_repeat 1 32 0 1238 215 4 8 chr13 72156210 72156466 -29716703 - MLT2D LTR ERVL -157 257 3 1024 204 9 19 chr13 72156467 72156683 -29716486 - ERVL-D LTR ERVL -6 5758 5545 2510 177 72 28 chr13 72156739 72157270 -29715899 - MLT2B3 LTR ERVL 0 554 1 3545 197 62 8 chr13 72157275 72158000 -29715169 - ERVL-D LTR ERVL -209 5555 4792 25 65 0 0 chr13 72159036 72159082 -29714087 + AT_rich Low_complexity Low_complexity 1 46 0 728 258 146 36 chr13 72160073 72160402 -29712767 - MLT1A1 LTR MaLR 0 365 1 2254 122 3 0 chr13 72160905 72161217 -29711952 - AluSq SINE Alu 0 313 1 28 61 0 0 chr13 72161271 72161320 -29711849 + AT_rich Low_complexity Low_complexity 1 49 0 4166 121 24 9 chr13 72162059 72162694 -29710475 - LTR9B LTR ERV1 0 644 1 1728 226 33 8 chr13 72163213 72163575 -29709594 - MLT1A1 LTR MaLR -3 362 1 345 245 54 48 chr13 72163606 72163753 -29709416 - AluJb SINE Alu -10 292 145 21 89 0 0 chr13 72163804 72163860 -29709309 + AT_rich Low_complexity Low_complexity 1 56 0 4893 84 21 0 chr13 72163861 72164525 -29708644 - L1PA12 LINE L1 -15 6153 5476 465 268 134 82 chr13 72164657 72165023 -29708146 - L2 LINE L2 -340 2974 2590 3369 69 2 7 chr13 72166356 72166806 -29706363 + LTR7 LTR ERV1 1 448 -2 16115 92 21 28 chr13 72166808 72170007 -29703162 + HERVH LTR ERV1 1 2992 -4721 882 118 49 0 chr13 72169993 72170137 -29703032 + HERVH LTR ERV1 3140 3290 -4423 * 3391 113 0 6 chr13 72170127 72170632 -29702537 + HERVH LTR ERV1 3492 3993 -3720 4230 142 8 5 chr13 72170634 72171294 -29701875 + HERVH LTR ERV1 4488 5149 -2564 1426 125 19 0 chr13 72171295 72171511 -29701658 + HERVH LTR ERV1 5600 5819 -1894 * 2224 83 100 14 chr13 72171509 72171870 -29701299 + HERVH LTR ERV1 7322 7713 0 3384 64 2 7 chr13 72171870 72172320 -29700849 + LTR7 LTR ERV1 1 448 -2 1001 113 0 13 chr13 72173247 72173397 -29699772 - AluSg/x SINE Alu -1 311 164 5281 220 33 15 chr13 72173461 72174609 -29698560 + MSTB-int LTR MaLR 445 1613 -38 2094 179 36 31 chr13 72174609 72175157 -29698012 - MLT2A2 LTR ERVL 0 554 1 2131 208 19 5 chr13 72175199 72175618 -29697551 + MSTB LTR MaLR 1 425 -1 814 309 0 12 chr13 72175622 72175865 -29697304 + MLT-int LTR MaLR 325 564 -1171 617 214 57 14 chr13 72175915 72176055 -29697114 + AluJb SINE Alu 158 303 -9 532 284 107 29 chr13 72176076 72176322 -29696847 + MLT-int LTR MaLR 579 787 -864 8451 197 45 24 chr13 72176332 72177049 -29696120 - L1 LINE L1 -1339 6226 5525 2062 107 0 38 chr13 72177049 72177366 -29695803 - AluSc SINE Alu 0 309 5 8451 197 45 24 chr13 72177366 72178365 -29694804 - L1 LINE L1 -2040 5525 4456 1964 120 0 56 chr13 72178365 72178689 -29694480 - AluSx SINE Alu -6 306 1 8451 197 45 24 chr13 72178689 72179083 -29694086 - L1 LINE L1 -3109 4456 4072 * 12447 158 28 27 chr13 72179061 72180176 -29692993 - L1 LINE L1 -4116 3449 2336 6696 65 13 0 chr13 72180176 72181159 -29692010 - L1PA7 LINE L1 -1 6153 5164 12447 158 28 27 chr13 72181159 72182383 -29690786 - L1 LINE L1 -5229 2336 1109 814 235 6 0 chr13 72182525 72182691 -29690478 - FRAM SINE Alu -14 162 1 495 248 15 23 chr13 72182699 72182832 -29690337 + MSTD LTR MaLR 59 190 -206 22 0 0 0 chr13 72183134 72183156 -29690013 + AT_rich Low_complexity Low_complexity 1 22 0 1776 82 8 8 chr13 72183403 72183648 -29689521 + AluY SINE Alu 60 304 -7 4980 149 55 7 chr13 72184453 72185368 -29687801 + L1MA4 LINE L1 5328 6286 -14 27 49 0 0 chr13 72186208 72186249 -29686920 + AT_rich Low_complexity Low_complexity 1 41 0 2241 80 7 10 chr13 72187315 72187615 -29685554 - AluSg SINE Alu -11 299 1 22 56 0 0 chr13 72187928 72187964 -29685205 + AT_rich Low_complexity Low_complexity 1 36 0 30 27 0 0 chr13 72188367 72188404 -29684765 + AT_rich Low_complexity Low_complexity 1 37 0 195 42 0 0 chr13 72188584 72188608 -29684561 + (TA)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr13 72188758 72188795 -29684374 + AT_rich Low_complexity Low_complexity 1 37 0 764 167 42 0 chr13 72189260 72189404 -29683765 + MLT2B2 LTR ERVL 1 150 -365 966 184 0 25 chr13 72189430 72189626 -29683543 + MLT2B2 LTR ERVL 325 515 0 1024 258 96 9 chr13 72189627 72189961 -29683208 + ERVL-B2 LTR ERVL 2 364 -5400 2875 133 16 73 chr13 72189970 72190517 -29682652 + LTR8 LTR ERV1 1 516 -175 2170 65 3 24 chr13 72190531 72190824 -29682345 - AluY SINE Alu -24 287 1 3857 207 54 32 chr13 72190881 72191736 -29681433 + MER52A LTR ERV1 882 1755 0 23 0 0 0 chr13 72192113 72192136 -29681033 + AT_rich Low_complexity Low_complexity 1 23 0 30 97 0 0 chr13 72192212 72192305 -29680864 + AT_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr13 72192666 72192689 -29680480 + AT_rich Low_complexity Low_complexity 1 23 0 326 312 51 19 chr13 72192894 72193051 -29680118 - L1MC4 LINE L1 -1123 6919 6758 2164 108 0 0 chr13 72193342 72193629 -29679540 + AluSg SINE Alu 1 287 -23 27 0 0 0 chr13 72193629 72193656 -29679513 + AT_rich Low_complexity Low_complexity 1 27 0 421 371 42 21 chr13 72193892 72194272 -29678897 - L2 LINE L2 -655 2659 2272 28 0 0 0 chr13 72194817 72194845 -29678324 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 72194925 72194965 -29678204 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr13 72195652 72195690 -29677479 + AT_rich Low_complexity Low_complexity 1 38 0 23 78 0 0 chr13 72195810 72195861 -29677308 + AT_rich Low_complexity Low_complexity 1 51 0 31 0 0 74 chr13 72196395 72196418 -29676751 + AT_rich Low_complexity Low_complexity 1 24 -26 1239 75 0 0 chr13 72196418 72196578 -29676591 + L1PA5 LINE L1 5987 6146 -8 31 0 0 74 chr13 72196578 72196608 -29676561 + AT_rich Low_complexity Low_complexity 24 50 0 194 285 124 48 chr13 72196838 72197024 -29676145 - L2 LINE L2 -1 3312 3113 827 222 32 5 chr13 72197043 72197228 -29675941 + MLT2B1 LTR ERVL 1 190 -330 697 254 27 22 chr13 72197218 72197403 -29675766 + MLT2B1 LTR ERVL 301 486 -34 * 335 212 12 0 chr13 72197403 72197488 -29675681 + (TATG)n Simple_repeat Simple_repeat 2 87 0 203 278 42 14 chr13 72197573 72197645 -29675524 - L2 LINE L2 -212 3060 2987 1896 140 3 3 chr13 72197647 72197933 -29675236 + AluSq SINE Alu 1 286 -27 321 312 84 42 chr13 72198135 72198350 -29674819 - MER58A DNA MER1_type 0 224 1 244 204 0 0 chr13 72198881 72198930 -29674239 + (TG)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr13 72200304 72200326 -29672843 + AT_rich Low_complexity Low_complexity 1 22 0 199 313 60 52 chr13 72200572 72200706 -29672463 + MIR SINE MIR 2 136 -126 973 169 27 9 chr13 72201427 72201646 -29671523 + L1MA4 LINE L1 6072 6294 -6 24 53 0 0 chr13 72201646 72201684 -29671485 + AT_rich Low_complexity Low_complexity 1 38 0 659 105 0 0 chr13 72201880 72201975 -29671194 + AluSc SINE Alu 1 95 -214 315 194 16 0 chr13 72202004 72202066 -29671103 + Tigger5 DNA MER2_type 2261 2323 0 353 228 38 0 chr13 72202067 72202146 -29671023 - MLT1E1 LTR MaLR -572 82 1 1658 278 73 83 chr13 72202149 72203576 -29669593 - L1MEc LINE L1 -4353 2043 631 387 343 33 22 chr13 72203799 72203980 -29669189 - HERV16 LTR ERVL -3111 1885 1703 33 25 0 0 chr13 72204087 72204127 -29669042 + AT_rich Low_complexity Low_complexity 1 40 0 24 85 0 0 chr13 72206259 72206318 -29666851 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr13 72206721 72206742 -29666427 + AT_rich Low_complexity Low_complexity 1 21 0 1469 220 57 96 chr13 72207784 72208315 -29664854 + MLT2B1 LTR ERVL 1 510 -10 26 30 0 0 chr13 72208498 72208531 -29664638 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr13 72208698 72208722 -29664447 + AT_rich Low_complexity Low_complexity 1 24 0 33 43 0 0 chr13 72209597 72209644 -29663525 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chr13 72210613 72210642 -29662527 + AT_rich Low_complexity Low_complexity 1 29 0 289 302 63 16 chr13 72210800 72210926 -29662243 - MER58A DNA MER1_type 0 133 2 225 279 85 8 chr13 72213085 72213214 -29659955 - L1MC4 LINE L1 -2 8040 7902 21 36 0 0 chr13 72213226 72213254 -29659915 + AT_rich Low_complexity Low_complexity 1 28 0 552 292 132 40 chr13 72213316 72213921 -29659248 + L1MC4 LINE L1 6946 7667 -205 233 81 65 0 chr13 72213935 72213997 -29659172 + (TA)n Simple_repeat Simple_repeat 1 66 0 227 257 78 0 chr13 72214018 72214181 -29658988 + L1MC5 LINE L1 7720 7925 -117 22 56 0 0 chr13 72214202 72214238 -29658931 + AT_rich Low_complexity Low_complexity 1 36 0 1812 167 0 0 chr13 72214304 72214586 -29658583 - AluSq SINE Alu -31 282 1 551 279 74 28 chr13 72214596 72214879 -29658290 + L1M4 LINE L1 2636 2931 -3215 1126 273 96 48 chr13 72214889 72215347 -29657822 - MLT1F LTR MaLR -60 482 3 944 277 108 0 chr13 72215349 72215793 -29657376 + L1M4 LINE L1 2617 3108 -3038 189 329 47 0 chr13 72215981 72216066 -29657103 + MIR SINE MIR 52 140 -122 36 53 0 0 chr13 72217379 72217436 -29655733 + AT_rich Low_complexity Low_complexity 1 57 0 11418 210 25 52 chr13 72217516 72220694 -29652475 + L1P LINE L1 1 3092 -3054 1115 145 72 38 chr13 72221823 72222085 -29651084 + L1MA8 LINE L1 6020 6290 -1 439 180 6 45 chr13 72222925 72223103 -29650066 + CT-rich Low_complexity Low_complexity 4 174 0 299 272 22 11 chr13 72223103 72223195 -29649974 + C-rich Low_complexity Low_complexity 5 97 0 207 0 0 0 chr13 72225388 72225411 -29647758 + (T)n Simple_repeat Simple_repeat 1 23 0 4885 187 74 3 chr13 72226225 72227188 -29645981 + Tigger7 DNA MER2_type 3 1033 -1454 357 265 12 0 chr13 72227180 72227263 -29645906 + Tigger7 DNA MER2_type 2408 2491 0 * 314 258 73 32 chr13 72227395 72227996 -29645173 - L1MEc LINE L1 -4974 1422 761 306 0 0 0 chr13 72228001 72228035 -29645134 + (TTA)n Simple_repeat Simple_repeat 3 36 0 969 57 21 14 chr13 72228035 72228175 -29644994 - L1PA4 LINE L1 -18 6137 5997 2622 37 3 3 chr13 72228275 72228599 -29644570 - L1PA4 LINE L1 -113 6042 5719 2154 121 6 13 chr13 72228620 72228935 -29644234 - AluSq SINE Alu 0 313 1 324 290 172 0 chr13 72228938 72229107 -29644062 - L1MEc LINE L1 -5653 743 546 454 295 0 7 chr13 72229426 72229565 -29643604 - L1MEc LINE L1 -6210 186 49 215 297 0 0 chr13 72231598 72231672 -29641497 + A-rich Low_complexity Low_complexity 1 74 0 194 286 136 34 chr13 72231838 72231985 -29641184 - MIR SINE MIR -1 261 100 211 211 0 0 chr13 72232057 72232095 -29641074 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 202 214 14 14 chr13 72232124 72232194 -29640975 + (TA)n Simple_repeat Simple_repeat 2 71 0 221 291 52 52 chr13 72232259 72232393 -29640776 - L2 LINE L2 -1 3312 3179 204 97 0 0 chr13 72233217 72233248 -29639921 + (GA)n Simple_repeat Simple_repeat 2 32 0 255 325 24 32 chr13 72233318 72233441 -29639728 + MIR SINE MIR 85 206 -56 1182 181 82 73 chr13 72234799 72235141 -29638028 + MLT1D LTR MaLR 12 356 -149 838 102 79 0 chr13 72235141 72235268 -29637901 + MER30 DNA MER1_type 1 137 -93 10135 136 36 13 chr13 72235271 72237846 -29635323 - L1PA10 LINE L1 -16 6152 3544 434 261 0 0 chr13 72238041 72238129 -29635040 - MER5A DNA MER1_type -6 183 96 270 351 93 33 chr13 72238133 72238529 -29634640 + L2 LINE L2 1766 2185 -1129 29 47 0 0 chr13 72238821 72238864 -29634305 + AT_rich Low_complexity Low_complexity 1 43 0 239 237 145 0 chr13 72238988 72239064 -29634105 - L1ME LINE L1 -345 5817 5731 350 322 47 37 chr13 72239232 72239446 -29633723 - L1ME LINE L1 -772 5470 5255 415 177 28 20 chr13 72239542 72239802 -29633367 + (TA)n Simple_repeat Simple_repeat 1 262 0 533 199 23 0 chr13 72239883 72240054 -29633115 + (TA)n Simple_repeat Simple_repeat 1 175 0 337 233 107 10 chr13 72240186 72240289 -29632880 - MER67D LTR ERV1 -43 471 359 637 210 0 7 chr13 72240289 72240427 -29632742 + L1MA8 LINE L1 6155 6291 0 1079 227 59 33 chr13 72240462 72240848 -29632321 - MER67C LTR ERV1 -259 255 4 34 55 0 0 chr13 72241064 72241119 -29632050 + AT_rich Low_complexity Low_complexity 1 55 0 26 50 0 0 chr13 72241211 72241251 -29631918 + AT_rich Low_complexity Low_complexity 1 40 0 742 148 0 0 chr13 72241287 72241402 -29631767 + THE1B LTR MaLR 181 295 -69 23 97 0 0 chr13 72241413 72241485 -29631684 + AT_rich Low_complexity Low_complexity 1 72 0 1839 183 28 11 chr13 72241770 72242125 -29631044 + THE1B LTR MaLR 4 364 0 9257 116 49 41 chr13 72242125 72243692 -29629477 + THE1B-int LTR MaLR 1 1580 0 2124 154 22 3 chr13 72243693 72244049 -29629120 + THE1B LTR MaLR 2 364 0 302 291 21 7 chr13 72244430 72244571 -29628598 - L1M4 LINE L1 -2660 3486 3344 1526 218 135 28 chr13 72245228 72245724 -29627445 + L1MA4 LINE L1 5746 6294 -6 256 150 0 0 chr13 72245939 72245979 -29627190 + AluJb SINE Alu 80 119 -183 29 0 0 0 chr13 72245979 72246008 -29627161 + AT_rich Low_complexity Low_complexity 1 29 0 229 173 58 0 chr13 72246041 72246343 -29626826 + (TA)n Simple_repeat Simple_repeat 1 319 0 434 119 70 0 chr13 72246366 72246509 -29626660 + (TA)n Simple_repeat Simple_repeat 1 153 0 855 239 0 0 chr13 72246509 72246685 -29626484 + AluJb SINE Alu 132 307 -5 32 57 0 0 chr13 72246702 72246755 -29626414 + AT_rich Low_complexity Low_complexity 1 53 0 3192 148 46 5 chr13 72247201 72247811 -29625358 + LTR24C LTR ERV1 1 635 0 226 267 0 17 chr13 72247851 72247911 -29625258 - MER5A DNA MER1_type -118 71 13 384 297 32 32 chr13 72248119 72248274 -29624895 + L1MCa LINE L1 2 156 -6270 3512 155 48 6 chr13 72248378 72249003 -29624166 + MER39B LTR ERV1 3 653 0 189 74 0 0 chr13 72249855 72249882 -29623287 + (CA)n Simple_repeat Simple_repeat 2 28 0 309 42 0 83 chr13 72249893 72249941 -29623228 - MLT2A1 LTR ERVL -8 436 393 366 134 0 0 chr13 72249947 72250014 -29623155 + (TA)n Simple_repeat Simple_repeat 2 68 0 1913 81 46 0 chr13 72250014 72250274 -29622895 - MLT2A1 LTR ERVL -172 272 1 191 267 17 50 chr13 72250401 72250461 -29622708 + L2 LINE L2 3010 3067 -246 1077 161 0 17 chr13 72251282 72251462 -29621707 - AluSg/x SINE Alu -4 308 132 1621 186 7 3 chr13 72251570 72251855 -29621314 - AluSx SINE Alu -24 288 3 26 82 0 0 chr13 72252529 72252590 -29620579 + AT_rich Low_complexity Low_complexity 1 61 0 21 100 0 0 chr13 72252753 72252823 -29620346 + AT_rich Low_complexity Low_complexity 1 70 0 215 352 23 11 chr13 72252882 72252970 -29620199 - L2 LINE L2 -62 3251 3163 212 343 148 22 chr13 72253232 72253556 -29619613 - L2 LINE L2 -470 2844 2480 204 125 0 0 chr13 72253902 72253934 -29619235 + (CATA)n Simple_repeat Simple_repeat 1 32 0 1621 164 13 27 chr13 72254436 72254735 -29618434 - AluJb SINE Alu -17 295 1 997 216 10 84 chr13 72255722 72256019 -29617150 + MER76 LTR ERV 1 275 -413 2027 171 32 0 chr13 72256136 72256482 -29616687 - MER47A DNA MER2_type -9 357 1 289 298 84 25 chr13 72256729 72256954 -29616215 + LTR16A LTR ERVL 130 423 -27 428 152 0 0 chr13 72257361 72257427 -29615742 + L1PB4 LINE L1 6021 6086 -70 22 0 0 0 chr13 72257428 72257450 -29615719 + AT_rich Low_complexity Low_complexity 1 22 0 302 78 0 20 chr13 72257547 72257598 -29615571 + (TC)n Simple_repeat Simple_repeat 1 50 0 438 281 44 22 chr13 72258219 72258354 -29614815 + MIR SINE MIR 15 152 -110 1792 244 85 87 chr13 72259311 72260158 -29613011 - MER21B LTR ERV1 -14 849 5 207 167 0 0 chr13 72260907 72260949 -29612220 + CT-rich Low_complexity Low_complexity 2 43 0 264 164 29 29 chr13 72261008 72261112 -29612057 + (TA)n Simple_repeat Simple_repeat 1 104 0 2242 144 22 8 chr13 72261480 72261849 -29611320 + THE1C LTR MaLR 2 375 0 199 111 22 22 chr13 72263245 72263290 -29609879 + GA-rich Low_complexity Low_complexity 2 46 0 22 56 0 0 chr13 72264132 72264168 -29609001 + AT_rich Low_complexity Low_complexity 1 36 0 226 356 15 38 chr13 72264597 72264729 -29608440 + MLT1I LTR MaLR 101 229 -180 1188 43 0 0 chr13 72265496 72265674 -29607495 + AluY SINE Alu 143 320 0 477 143 0 0 chr13 72266422 72266499 -29606670 - AluJ/FRAM SINE Alu -11 301 225 2568 65 0 0 chr13 72267831 72268141 -29605028 - AluY SINE Alu 0 311 2 240 130 0 0 chr13 72269079 72269125 -29604044 + (CA)n Simple_repeat Simple_repeat 1 46 0 326 287 6 28 chr13 72269391 72269572 -29603597 + (TA)n Simple_repeat Simple_repeat 2 178 0 1178 172 48 7 chr13 72269854 72270127 -29603042 + L1MA7 LINE L1 6007 6290 -1 2725 257 29 82 chr13 72271262 72271783 -29601386 + L1M4 LINE L1 1 440 -6102 198 0 0 0 chr13 72271783 72271805 -29601364 + (GA)n Simple_repeat Simple_repeat 2 23 0 2725 257 29 82 chr13 72271805 72272329 -29600840 + L1M4 LINE L1 440 990 -5552 1609 188 0 35 chr13 72272380 72272694 -29600475 + AluJo SINE Alu 1 303 -9 1964 266 31 20 chr13 72272695 72273346 -29599823 + L1M4 LINE L1 4992 5649 -995 322 285 0 90 chr13 72273496 72273640 -29599529 - L1M4 LINE L1 -592 5834 5707 399 313 42 32 chr13 72273799 72274016 -29599153 + LTR68 LTR ERV1 491 709 -31 855 265 54 44 chr13 72274043 72274545 -29598624 - L1M4 LINE L1 -2125 4281 3775 * 892 303 65 12 chr13 72274541 72275251 -29597918 - L1M4 LINE L1 -3083 3323 2510 604 184 28 14 chr13 72275263 72275404 -29597765 + L1MB1 LINE L1 6020 6162 -6 435 208 64 32 chr13 72275442 72275567 -29597602 - MLT2D LTR ERVL -203 211 83 329 379 11 6 chr13 72275610 72275784 -29597385 - L1M4 LINE L1 -5044 1365 1191 198 0 0 0 chr13 72277004 72277026 -29596143 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 5466 202 21 39 chr13 72277085 72277168 -29596001 + L1 LINE L1 3595 3678 -2468 321 93 0 0 chr13 72277168 72277222 -29595947 + (CA)n Simple_repeat Simple_repeat 1 54 0 5466 202 21 39 chr13 72277222 72278488 -29594681 + L1 LINE L1 3678 4920 -1226 435 326 95 43 chr13 72278495 72278894 -29594275 - L2 LINE L2 -561 2753 2334 198 0 0 0 chr13 72279637 72279659 -29593510 + (T)n Simple_repeat Simple_repeat 1 22 0 4893 152 89 40 chr13 72281202 72282174 -29590995 - LTR28 LTR ERV1 0 1020 1 182 61 0 30 chr13 72282194 72282227 -29590942 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2267 100 0 0 chr13 72282342 72282643 -29590526 + AluY SINE Alu 1 301 -10 24 32 0 0 chr13 72282654 72282685 -29590484 + AT_rich Low_complexity Low_complexity 1 31 0 2654 104 0 3 chr13 72285224 72285589 -29587580 - THE1B LTR MaLR 0 364 1 3395 133 23 2 chr13 72286432 72286949 -29586220 + MER1A DNA MER1_type 1 528 -1 413 152 25 13 chr13 72289345 72289451 -29583718 + AluSp/q SINE Alu 205 311 0 1671 142 195 11 chr13 72289629 72289988 -29583181 + MSTA LTR MaLR 4 428 0 2019 98 7 46 chr13 72290037 72290371 -29582798 + AluSg SINE Alu 1 322 0 23 33 0 0 chr13 72290767 72290797 -29582372 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr13 72291065 72291116 -29582053 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 72291518 72291541 -29581628 + AT_rich Low_complexity Low_complexity 1 23 0 210 219 0 41 chr13 72291830 72291903 -29581266 + (CAAAC)n Simple_repeat Simple_repeat 5 74 0 1277 214 72 23 chr13 72292591 72292936 -29580233 + MLT1A1 LTR MaLR 4 365 0 950 187 0 0 chr13 72293352 72293539 -29579630 - L1MA4 LINE L1 -9 6291 6105 24 67 0 0 chr13 72293559 72293604 -29579565 + AT_rich Low_complexity Low_complexity 1 45 0 1173 193 17 45 chr13 72293642 72293932 -29579237 - L1MA4 LINE L1 -172 6128 5847 * 2010 148 42 26 chr13 72293930 72294314 -29578855 + L1MA4 LINE L1 5444 5833 -467 221 208 19 0 chr13 72295140 72295193 -29577976 + (TA)n Simple_repeat Simple_repeat 2 55 0 2350 175 21 13 chr13 72295271 72295745 -29577424 + L1MA7 LINE L1 5547 6024 -267 27 29 0 0 chr13 72295938 72295972 -29577197 + AT_rich Low_complexity Low_complexity 1 34 0 306 325 35 18 chr13 72296302 72296471 -29576698 - LTR16C LTR ERVL -8 483 312 2124 213 10 33 chr13 72297021 72297538 -29575631 - MLT1D LTR MaLR 0 505 1 261 219 351 0 chr13 72298766 72298880 -29574289 - L1ME3A LINE L1 -103 6067 5914 22 0 0 0 chr13 72299033 72299055 -29574114 + AT_rich Low_complexity Low_complexity 1 22 0 1969 139 7 0 chr13 72299422 72299724 -29573445 + AluSx SINE Alu 1 304 -8 245 241 0 0 chr13 72300119 72300173 -29572996 + MER5A DNA MER1_type 43 96 -93 1183 229 0 0 chr13 72300781 72301008 -29572161 - MER46A DNA MER2_type -9 227 1 186 143 0 0 chr13 72301604 72301639 -29571530 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 315 0 0 0 chr13 72301934 72301969 -29571200 + (CA)n Simple_repeat Simple_repeat 2 36 0 1803 197 11 22 chr13 72302600 72302960 -29570209 + MLT1A1 LTR MaLR 10 365 0 22 0 0 0 chr13 72303381 72303403 -29569766 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr13 72303472 72303504 -29569665 + AT_rich Low_complexity Low_complexity 1 32 0 316 279 38 0 chr13 72303979 72304058 -29569111 - L2 LINE L2 -3 3269 3188 248 345 71 25 chr13 72304309 72304547 -29568622 - L2 LINE L2 -379 2935 2687 5788 185 13 20 chr13 72305769 72307035 -29566134 - L1M2 LINE L1 -768 5378 4123 995 190 25 1 chr13 72307033 72307273 -29565896 + L1M2 LINE L1 5358 5621 -684 * 438 219 195 8 chr13 72307271 72307399 -29565770 + L1M2 LINE L1 5507 5658 -642 * 477 136 16 43 chr13 72307457 72307641 -29565528 + (TA)n Simple_repeat Simple_repeat 1 179 0 287 156 0 0 chr13 72307643 72307688 -29565481 + L1M2 LINE L1 5605 5649 -651 543 129 53 7 chr13 72307690 72307957 -29565212 + (TA)n Simple_repeat Simple_repeat 1 279 0 3266 45 0 0 chr13 72357957 72358356 -29514813 - L1P LINE L1 -1161 4985 4587 * 4896 30 7 3 chr13 72358335 72358933 -29514236 + L1P LINE L1 3970 4569 -1577 816 231 32 135 chr13 72359358 72359765 -29513404 - MLT1A1 LTR MaLR 0 365 1 691 197 266 74 chr13 72359971 72360468 -29512701 - LTR49 LTR ERV1 0 595 4 219 182 18 0 chr13 72360726 72360781 -29512388 + (TA)n Simple_repeat Simple_repeat 2 57 0 224 255 0 0 chr13 72360808 72360859 -29512310 + A-rich Low_complexity Low_complexity 1 51 0 2479 51 3 13 chr13 72361051 72361363 -29511806 + AluY SINE Alu 1 309 -2 21 36 0 0 chr13 72361523 72361551 -29511618 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 72361785 72361813 -29511356 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 72362022 72362045 -29511124 + AT_rich Low_complexity Low_complexity 1 23 0 2889 228 52 23 chr13 72362133 72362952 -29510217 + L1MC2 LINE L1 5493 6335 -9 1522 128 38 11 chr13 72362970 72363236 -29509933 + L1P4 LINE L1 5468 5740 -426 593 126 0 0 chr13 72363237 72363324 -29509845 - AluS SINE Alu -225 87 1 469 226 87 141 chr13 72363423 72363763 -29509406 - MER57B LTR ERV1 -86 317 1 842 351 28 26 chr13 72363764 72364345 -29508824 - MER31-int LTR ERV1 -395 7142 6561 1331 236 64 73 chr13 72364562 72365581 -29507588 - MER31-int LTR ERV1 -1905 3031 2392 2979 275 62 20 chr13 72365690 72367019 -29506150 + L1ME3A LINE L1 2405 3789 -2357 1989 117 72 9 chr13 72367019 72367352 -29505817 - THE1A LTR MaLR 0 355 2 6583 129 30 1 chr13 72367353 72368344 -29504825 - THE1A-int LTR MaLR 0 1580 561 5063 137 23 23 chr13 72368480 72369522 -29503647 + L1PA13 LINE L1 5105 6152 -11 1450 250 75 7 chr13 72369539 72369979 -29503190 + L1ME3A LINE L1 4697 5166 -980 226 434 56 71 chr13 72370501 72370879 -29502290 + Charlie2 DNA MER1_type 2491 2862 0 552 108 57 0 chr13 72371216 72371373 -29501796 + (TA)n Simple_repeat Simple_repeat 2 167 0 636 246 91 42 chr13 72372063 72372348 -29500821 + L1ME3A LINE L1 5872 6170 0 509 189 21 0 chr13 72373205 72373300 -29499869 + THE1C LTR MaLR 279 375 0 887 294 147 23 chr13 72373303 72373745 -29499424 + MER90 LTR ERV1 68 564 -50 233 175 62 72 chr13 72373789 72373886 -29499283 - L1ME LINE L1 -661 5501 5406 276 273 29 7 chr13 72374040 72374179 -29498990 - L1ME LINE L1 -816 5330 5189 927 273 98 41 chr13 72374283 72375161 -29498008 - L1ME LINE L1 -1118 5028 4101 2232 201 34 23 chr13 72375168 72375696 -29497473 + L1MA7 LINE L1 5758 6291 0 274 325 32 0 chr13 72375739 72375865 -29497304 - L1ME LINE L1 -2060 4086 3957 948 191 0 0 chr13 72375899 72376056 -29497113 - FRAM SINE Alu -24 152 1 339 272 115 37 chr13 72376063 72376294 -29496875 - L1ME LINE L1 -2187 3959 3711 616 369 82 28 chr13 72376500 72377475 -29495694 - HERVL LTR ERVL -2564 3200 2173 332 308 62 60 chr13 72377867 72378221 -29494948 - HERVL LTR ERVL -4085 1569 1271 1307 208 19 99 chr13 72378223 72378647 -29494522 + MLT1B LTR MaLR 1 390 0 301 327 78 15 chr13 72378714 72378919 -29494250 + L2 LINE L2 2257 2474 -840 212 306 94 12 chr13 72378963 72379048 -29494121 - L2 LINE L2 -514 2800 2709 1206 238 57 27 chr13 72379067 72379186 -29493983 - L1MB5 LINE L1 -70 6104 5990 1959 132 30 0 chr13 72379186 72379489 -29493680 - AluSx SINE Alu 0 312 1 1206 238 57 27 chr13 72379489 72379810 -29493359 - L1MB5 LINE L1 -184 5990 5651 907 226 14 18 chr13 72380012 72380229 -29492940 - L1MB5 LINE L1 -552 5628 5413 322 248 26 35 chr13 72380238 72380351 -29492818 - L1MB5 LINE L1 -861 5285 5174 1692 122 16 1 chr13 72380474 72380736 -29492433 + L1PB3 LINE L1 5875 6270 -23 28 0 0 0 chr13 72380764 72380792 -29492377 + AT_rich Low_complexity Low_complexity 1 28 0 216 216 0 0 chr13 72381011 72381062 -29492107 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1366 171 0 0 chr13 72381313 72381552 -29491617 - Tigger5 DNA MER2_type 0 2323 2085 267 245 0 0 chr13 72381580 72381629 -29491540 - Tigger5 DNA MER2_type -2268 55 7 414 69 0 0 chr13 72381631 72381689 -29491480 + (TG)n Simple_repeat Simple_repeat 1 58 0 25 0 0 0 chr13 72382884 72382909 -29490260 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr13 72383151 72383179 -29489990 + AT_rich Low_complexity Low_complexity 1 28 0 630 157 0 10 chr13 72383964 72384066 -29489103 - AluS SINE Alu -211 101 1 854 247 79 43 chr13 72384104 72384749 -29488420 - MER57A-int LTR ERV1 -2949 1987 1358 279 228 15 81 chr13 72384891 72385027 -29488142 - MER57A-int LTR ERV1 -400 1386 1260 744 238 33 20 chr13 72385449 72385707 -29487462 - MER57A-int LTR ERV1 -7238 299 3 689 226 64 60 chr13 72385710 72385944 -29487225 - MER57A LTR ERV1 0 403 169 341 291 26 26 chr13 72385984 72386135 -29487034 - MER57B LTR ERV1 -245 189 39 342 302 35 52 chr13 72386178 72386350 -29486819 + L1MEd LINE L1 843 1011 -5108 333 0 0 0 chr13 72386549 72386586 -29486583 + (CA)n Simple_repeat Simple_repeat 1 37 0 205 130 0 43 chr13 72386613 72386659 -29486510 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 183 42 0 0 chr13 72387363 72387387 -29485782 + (A)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr13 72387975 72388015 -29485154 + AT_rich Low_complexity Low_complexity 1 40 0 600 74 0 0 chr13 72388247 72388328 -29484841 + L1PA5 LINE L1 6073 6153 -1 435 119 0 0 chr13 72389008 72389075 -29484094 + (TA)n Simple_repeat Simple_repeat 2 68 0 30 45 0 0 chr13 72389627 72389671 -29483498 + AT_rich Low_complexity Low_complexity 1 44 0 180 102 34 51 chr13 72390656 72390715 -29482454 + T-rich Low_complexity Low_complexity 5 62 0 233 94 0 0 chr13 72391345 72391377 -29481792 + Alu SINE Alu 1 32 -271 1886 31 0 0 chr13 72391377 72391601 -29481568 + L1P LINE L1 4728 4951 -1195 1768 182 20 29 chr13 72391959 72392310 -29480859 + MER7A DNA MER2_type 1 346 0 1695 185 64 62 chr13 72392876 72393389 -29479780 + MER67D LTR ERV1 1 514 0 2334 88 3 0 chr13 72393654 72393961 -29479208 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr13 72395117 72395140 -29478029 + AT_rich Low_complexity Low_complexity 1 23 0 279 114 0 0 chr13 72395485 72395529 -29477640 + (AATTG)n Simple_repeat Simple_repeat 3 46 0 2340 60 7 3 chr13 72395611 72395910 -29477259 + AluY SINE Alu 1 300 -11 1252 291 33 37 chr13 72396743 72397234 -29475935 + Cheshire DNA MER1_type 1 489 -1931 1484 182 19 22 chr13 72397969 72398282 -29474887 - AluJb SINE Alu 0 312 1 41 21 0 0 chr13 72399104 72399152 -29474017 + AT_rich Low_complexity Low_complexity 1 48 0 29 0 0 0 chr13 72399254 72399283 -29473886 + AT_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr13 72399607 72399648 -29473521 + AT_rich Low_complexity Low_complexity 1 41 0 677 226 77 68 chr13 72399780 72400168 -29473001 + MLT1A1 LTR MaLR 4 365 0 1695 199 36 32 chr13 72400229 72400642 -29472527 + L1M3c LINE L1 42 1130 -5907 560 304 88 30 chr13 72400646 72401268 -29471901 - L1MEc LINE L1 -4722 1674 1017 300 310 26 0 chr13 72401322 72401435 -29471734 - L1M4 LINE L1 -840 5306 5191 826 194 79 55 chr13 72401460 72401713 -29471456 - L1MB2 LINE L1 -27 6144 5886 22 0 0 0 chr13 72401925 72401947 -29471222 + AT_rich Low_complexity Low_complexity 1 22 0 524 231 0 0 chr13 72402131 72402239 -29470930 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3079 161 79 18 chr13 72402230 72402899 -29470270 + Tigger3(Golem) DNA MER2_type 2278 2987 -42 22 0 0 0 chr13 72402899 72402921 -29470248 + AT_rich Low_complexity Low_complexity 1 22 0 846 209 0 0 chr13 72402939 72403112 -29470057 - AluJb SINE Alu 0 301 129 27 49 0 0 chr13 72403260 72403301 -29469868 + AT_rich Low_complexity Low_complexity 1 41 0 268 273 50 30 chr13 72404388 72404487 -29468682 - L1M4 LINE L1 -2566 3580 3480 1011 322 49 26 chr13 72404537 72405149 -29468020 - L1MEc LINE L1 -5656 740 115 522 300 95 38 chr13 72405730 72406487 -29466682 - L1MC4 LINE L1 -142 7900 7101 258 325 0 0 chr13 72406489 72406569 -29466600 + CT-rich Low_complexity Low_complexity 3 82 0 23 33 0 0 chr13 72406757 72406787 -29466382 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr13 72406875 72406897 -29466272 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr13 72407711 72407741 -29465428 + AT_rich Low_complexity Low_complexity 1 30 0 2573 158 16 49 chr13 72407808 72408357 -29464812 - L1MB2 LINE L1 -7 6164 5634 194 0 39 0 chr13 72409595 72409621 -29463548 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 577 206 0 24 chr13 72409670 72409796 -29463373 + FRAM SINE Alu 33 155 -21 911 343 57 33 chr13 72409831 72410952 -29462217 - LTR57-int LTR ERVL -2827 2516 1528 213 285 32 16 chr13 72411712 72411835 -29461334 + T-rich Low_complexity Low_complexity 6 130 0 804 211 95 39 chr13 72412053 72412285 -29460884 + MER2 DNA MER2_type 91 335 -10 266 148 19 0 chr13 72412291 72412345 -29460824 + CT-rich Low_complexity Low_complexity 3 57 0 318 71 0 0 chr13 72412381 72412423 -29460746 - MLT1A1 LTR MaLR -309 56 15 328 323 53 58 chr13 72414251 72414477 -29458692 + MIR SINE MIR 2 226 -36 26799 99 20 3 chr13 72414568 72418296 -29454873 + HERVL-A2 LTR ERVL 1863 5654 0 1970 189 42 31 chr13 72418296 72418834 -29454335 + MLT2A2 LTR ERVL 1 554 0 1177 310 66 33 chr13 72418893 72419467 -29453702 + L1MCa LINE L1 47 562 -5483 1914 169 103 5 chr13 72419486 72419876 -29453293 + MSTA LTR MaLR 1 428 0 8195 178 24 35 chr13 72419878 72421467 -29451702 + MSTA-int LTR MaLR 3 1573 -7 2101 168 80 5 chr13 72421474 72421872 -29451297 + MSTA LTR MaLR 1 428 0 2170 241 52 35 chr13 72421880 72423022 -29450147 + L1MCa LINE L1 653 2036 -4709 266 96 56 208 chr13 72423196 72423255 -29449914 + L1MC3 LINE L1 6898 6930 -855 1830 138 6 38 chr13 72423255 72423575 -29449594 + AluSx SINE Alu 1 310 -2 266 96 56 208 chr13 72423575 72423640 -29449529 + L1MC3 LINE L1 6930 7003 -782 299 321 24 18 chr13 72425950 72426118 -29447051 + L1M4 LINE L1 4554 4722 -1424 1362 222 31 80 chr13 72426338 72426731 -29446438 - LTR44 LTR ERV1 0 519 151 1740 158 54 35 chr13 72426731 72427099 -29446070 - THE1C LTR MaLR 0 375 1 1362 222 31 80 chr13 72427099 72427183 -29445986 - LTR44 LTR ERV1 -368 151 65 1667 188 16 3 chr13 72427199 72427518 -29445651 - MER49 LTR ERV1 -600 323 1 22 35 0 0 chr13 72427784 72427813 -29445356 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 72427846 72427867 -29445302 + AT_rich Low_complexity Low_complexity 1 21 0 801 242 39 1 chr13 72427955 72428274 -29444895 + MLT2C1 LTR ERVL 1 430 -34 5744 149 19 9 chr13 72428320 72429983 -29443186 + L1PA14 LINE L1 4486 6158 -3 2557 4 0 0 chr13 72430011 72430348 -29442821 - AluY SINE Alu 0 337 1 1394 178 117 46 chr13 72430404 72430797 -29442372 + L1MA8 LINE L1 5869 6289 -2 333 292 78 39 chr13 72431025 72431282 -29441887 + L1ME3A LINE L1 5880 6146 -24 1599 159 74 40 chr13 72431283 72431635 -29441534 + THE1B LTR MaLR 1 364 0 27 29 0 0 chr13 72431938 72431972 -29441197 + AT_rich Low_complexity Low_complexity 1 34 0 728 258 21 0 chr13 72433620 72433806 -29439363 - MLT1B LTR MaLR 0 390 201 * 819 211 101 38 chr13 72433796 72434033 -29439136 + MER2 DNA MER2_type 91 342 -3 21 36 0 0 chr13 72434546 72434574 -29438595 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr13 72434611 72434639 -29438530 + AT_rich Low_complexity Low_complexity 1 28 0 210 125 0 0 chr13 72435190 72435222 -29437947 - MIR SINE MIR -107 155 124 210 204 34 45 chr13 72436493 72436581 -29436588 + (TTTA)n Simple_repeat Simple_repeat 2 88 0 27 49 0 0 chr13 72437160 72437201 -29435968 + AT_rich Low_complexity Low_complexity 1 41 0 273 246 29 0 chr13 72437201 72437270 -29435899 + CT-rich Low_complexity Low_complexity 4 74 0 264 232 0 14 chr13 72437271 72437340 -29435829 + L1MC4 LINE L1 7679 7746 -296 4422 203 38 18 chr13 72437615 72438494 -29434675 - MER54A LTR ERVL -5 896 1 244 268 216 0 chr13 72439421 72439518 -29433651 - L2 LINE L2 0 3313 3196 21 95 0 0 chr13 72439649 72439712 -29433457 + AT_rich Low_complexity Low_complexity 1 63 0 760 222 25 5 chr13 72439729 72439932 -29433237 - MER6B DNA MER2_type -1 209 3 21 36 0 0 chr13 72439942 72439970 -29433199 + AT_rich Low_complexity Low_complexity 1 28 0 249 119 0 0 chr13 72441662 72441704 -29431465 + (TG)n Simple_repeat Simple_repeat 2 43 0 957 154 37 6 chr13 72442224 72442386 -29430783 + MSTB LTR MaLR 211 377 -49 1895 99 4 11 chr13 72443498 72443760 -29429409 - AluY SINE Alu -13 298 39 266 73 24 0 chr13 72444295 72444336 -29428833 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 382 269 61 35 chr13 72444507 72444816 -29428353 + L1ME LINE L1 5482 5770 -400 4204 50 34 0 chr13 72445233 72445768 -29427401 + L1PA7 LINE L1 5597 6149 -5 5540 129 23 15 chr13 72446049 72447132 -29426037 - L1PA16 LINE L1 -10 6156 5076 667 269 18 0 chr13 72447155 72447378 -29425791 - L1P LINE L1 -978 5168 4942 307 303 100 56 chr13 72447380 72447631 -29425538 - HAL1 LINE L1 -864 1643 1382 367 273 0 0 chr13 72447700 72447799 -29425370 + LTR16B LTR ERVL 7 105 -359 342 0 0 0 chr13 72448135 72448173 -29424996 + (CA)n Simple_repeat Simple_repeat 2 39 0 914 275 146 20 chr13 72448366 72448708 -29424461 - MLT1E2 LTR MaLR 0 626 242 516 216 45 54 chr13 72448793 72448974 -29424195 + MLT1A2 LTR MaLR 1 174 -200 878 250 31 5 chr13 72449021 72449213 -29423956 + MLT1A2 LTR MaLR 172 368 -6 1736 187 0 0 chr13 72449600 72449905 -29423264 - AluJo SINE Alu -6 306 2 1818 150 40 35 chr13 72450535 72450908 -29422261 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 72451167 72451202 -29421967 + AT_rich Low_complexity Low_complexity 1 35 0 276 146 97 165 chr13 72452036 72452139 -29421030 + MER58 DNA MER1_type 4 99 -2321 422 233 10 10 chr13 72452150 72452253 -29420916 + MER58 DNA MER1_type 2318 2420 0 2606 132 19 14 chr13 72452854 72453280 -29419889 + MSTA LTR MaLR 1 428 0 627 276 11 6 chr13 72453612 72453786 -29419383 + MIR SINE MIR 49 223 -39 22 0 0 0 chr13 72453964 72453986 -29419183 + AT_rich Low_complexity Low_complexity 1 22 0 294 109 0 0 chr13 72454043 72454089 -29419080 + MADE1 DNA Mariner 35 80 0 6090 75 4 14 chr13 72454573 72455403 -29417766 + L1PA8A LINE L1 5308 6128 -3 21 0 0 0 chr13 72455551 72455572 -29417597 + AT_rich Low_complexity Low_complexity 1 21 0 1036 298 45 83 chr13 72458134 72458948 -29414221 - MER45C DNA AcHobo 0 953 1 2069 121 19 0 chr13 72459066 72459373 -29413796 + AluSq SINE Alu 1 313 0 258 360 105 28 chr13 72460413 72460805 -29412364 - L2 LINE L2 -556 2758 2337 22 0 0 0 chr13 72460973 72460995 -29412174 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 72461415 72461440 -29411729 + AT_rich Low_complexity Low_complexity 1 25 0 685 120 0 19 chr13 72461440 72461548 -29411621 - AluSp/q SINE Alu -3 310 205 240 407 34 0 chr13 72461702 72461820 -29411349 - MIR SINE MIR -130 132 11 201 162 0 0 chr13 72461833 72461870 -29411299 + (TAA)n Simple_repeat Simple_repeat 3 39 0 221 361 102 31 chr13 72461876 72462200 -29410969 + L2 LINE L2 2412 2758 -556 1024 136 14 12 chr13 72462446 72462724 -29410445 - MER1B DNA MER1_type 0 339 20 24 0 0 0 chr13 72462882 72462906 -29410263 + AT_rich Low_complexity Low_complexity 1 24 0 2246 275 80 10 chr13 72463367 72464389 -29408780 - L1MD1 LINE L1 -157 6085 4871 396 0 0 0 chr13 72464844 72464888 -29408281 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 30 0 0 chr13 72465055 72465088 -29408081 + AT_rich Low_complexity Low_complexity 1 33 0 262 81 0 0 chr13 72465658 72465695 -29407474 - MADE1 DNA Mariner 0 80 44 2019 116 0 58 chr13 72465708 72466036 -29407133 - AluSx SINE Alu -3 309 1 532 0 14 14 chr13 72466434 72466503 -29406666 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 29 0 0 0 chr13 72467202 72467231 -29405938 + AT_rich Low_complexity Low_complexity 1 29 0 497 322 17 45 chr13 72469131 72469420 -29403749 - MERVL LTR ERVL -2938 2547 2267 4665 147 17 65 chr13 72469966 72470851 -29402318 - L1PA16 LINE L1 -1 6165 5330 2029 143 0 9 chr13 72470851 72471166 -29402003 - AluSx SINE Alu 0 312 1 4665 147 17 65 chr13 72471166 72471405 -29401764 - L1PA16 LINE L1 -836 5330 5081 480 274 16 8 chr13 72471484 72471608 -29401561 + MER8 DNA MER2_type 3 127 -112 22 0 0 0 chr13 72472448 72472470 -29400699 + AT_rich Low_complexity Low_complexity 1 22 0 250 278 0 11 chr13 72473200 72473290 -29399879 - L1MC4 LINE L1 -1340 6702 6614 227 0 0 83 chr13 72473608 72473644 -29399525 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 207 0 0 0 chr13 72474246 72474269 -29398900 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 206 167 71 0 chr13 72474773 72474815 -29398354 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 287 296 0 0 chr13 72476015 72476086 -29397083 - MERVL LTR ERVL -3406 2124 2054 2130 327 47 39 chr13 72476342 72476584 -29396585 - MERVL LTR ERVL -3783 1747 1508 318 26 0 0 chr13 72476584 72476623 -29396546 + (CA)n Simple_repeat Simple_repeat 2 40 0 2130 327 47 39 chr13 72476623 72476939 -29396230 - MERVL LTR ERVL -4022 1508 1196 1959 132 52 19 chr13 72476939 72477302 -29395867 - THE1C LTR MaLR 0 375 1 2130 327 47 39 chr13 72477302 72477883 -29395286 - MERVL LTR ERVL -4334 1196 598 392 363 7 0 chr13 72477979 72478125 -29395044 - MERVL LTR ERVL -4969 561 415 1067 278 33 30 chr13 72478137 72478565 -29394604 - MERVL LTR ERVL -5094 436 8 243 0 0 0 chr13 72478597 72478624 -29394545 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 38938 34 3 2 chr13 72478691 72484479 -29388690 - L1PA3 LINE L1 0 6155 367 810 80 0 9 chr13 72484459 72484571 -29388598 + L1P LINE L1 154 264 -5882 * 1096 287 35 59 chr13 72484571 72484657 -29388512 - LTR40a LTR ERVL -16 503 417 1726 57 0 5 chr13 72484657 72484869 -29388300 + AluY SINE Alu 85 295 -16 1096 287 35 59 chr13 72484869 72485294 -29387875 - LTR40a LTR ERVL -102 417 4 301 310 35 0 chr13 72485338 72485454 -29387715 + L1ME1 LINE L1 6037 6156 -10 21 0 0 0 chr13 72486951 72486972 -29386197 + AT_rich Low_complexity Low_complexity 1 21 0 832 247 29 63 chr13 72487710 72488026 -29385143 - L1ME2 LINE L1 -10 6154 5850 395 294 78 26 chr13 72488137 72488290 -29384879 - MLT1E2 LTR MaLR -41 585 425 2164 124 0 0 chr13 72488301 72488599 -29384570 - AluSc SINE Alu -9 300 3 213 121 0 0 chr13 72488634 72488667 -29384502 + (T)n Simple_repeat Simple_repeat 1 33 0 1300 262 25 28 chr13 72488667 72489060 -29384109 - MLT1E2 LTR MaLR -234 392 1 22 0 0 0 chr13 72489506 72489528 -29383641 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr13 72489537 72489574 -29383595 + AT_rich Low_complexity Low_complexity 1 37 0 2884 64 13 0 chr13 72489590 72489964 -29383205 - L1PA7 LINE L1 -4 6150 5772 1377 222 73 73 chr13 72490188 72490693 -29382476 + MLT1D LTR MaLR 1 505 0 352 353 97 49 chr13 72491445 72491870 -29381299 + L2 LINE L2 2832 3276 -37 33 0 0 0 chr13 72492123 72492156 -29381013 + AT_rich Low_complexity Low_complexity 1 33 0 2077 111 0 0 chr13 72492287 72492567 -29380602 - AluSg SINE Alu -30 280 1 24 0 0 0 chr13 72493683 72493707 -29379462 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr13 72493845 72493887 -29379282 + AT_rich Low_complexity Low_complexity 1 42 0 1991 132 7 3 chr13 72494603 72494898 -29378271 - AluSq SINE Alu -17 296 1 1608 201 34 0 chr13 72495163 72495457 -29377712 + AluSx SINE Alu 2 305 -7 43 20 0 0 chr13 72495716 72495766 -29377403 + AT_rich Low_complexity Low_complexity 1 50 0 1669 197 127 18 chr13 72496049 72496435 -29376734 - MSTA LTR MaLR 0 428 1 8514 153 22 39 chr13 72496435 72498040 -29375129 - MSTA-int LTR MaLR 0 1580 3 1971 166 110 18 chr13 72498042 72498434 -29374735 - MSTA LTR MaLR 0 428 1 558 318 50 0 chr13 72499565 72499766 -29373403 - MIR SINE MIR -11 251 41 212 171 0 0 chr13 72499864 72499905 -29373264 + (TA)n Simple_repeat Simple_repeat 1 41 0 3066 110 52 12 chr13 72499908 72500389 -29372780 - L1PB1 LINE L1 -9 6142 5643 268 267 8 75 chr13 72500996 72501116 -29372053 + MLT1I LTR MaLR 249 360 -49 180 319 133 27 chr13 72501200 72501388 -29371781 + L2 LINE L2 2374 2581 -733 2260 85 0 0 chr13 72501532 72501859 -29371310 - AluY SINE Alu 0 327 1 3840 173 31 0 chr13 72502132 72502814 -29370355 - Tigger1 DNA MER2_type 0 2418 1716 * 8472 151 29 8 chr13 72502812 72504246 -29368923 - Tigger1 DNA MER2_type -931 1487 23 21 0 0 0 chr13 72505811 72505832 -29367337 + AT_rich Low_complexity Low_complexity 1 21 0 339 164 0 30 chr13 72506231 72506298 -29366871 - MER53 DNA DNA -3 186 122 833 184 6 0 chr13 72506303 72506466 -29366703 - L1MB5 LINE L1 -8 6664 6501 829 114 0 15 chr13 72506512 72506644 -29366525 + MER30 DNA MER1_type 1 130 -100 2980 252 41 29 chr13 72506660 72507883 -29365286 - L1MB5 LINE L1 -316 6356 5115 2139 102 3 0 chr13 72507883 72508198 -29364971 + AluSq SINE Alu 1 316 0 2980 252 41 29 chr13 72508198 72508635 -29364534 - L1MB5 LINE L1 -1557 5115 4685 1619 228 84 7 chr13 72508635 72509065 -29364104 - MLT1C LTR MaLR -4 463 1 780 178 19 111 chr13 72509072 72509280 -29363889 - MLT1C-int LTR MaLR -38 1333 1145 859 248 52 45 chr13 72509300 72509704 -29363465 - L1MB5 LINE L1 -5303 1239 833 294 221 16 8 chr13 72509721 72509848 -29363321 + GA-rich Low_complexity Low_complexity 1 128 0 462 318 47 27 chr13 72509881 72510139 -29363030 - L1MB5 LINE L1 -5765 777 515 423 318 78 32 chr13 72510352 72510569 -29362600 - L1MB5 LINE L1 -6275 267 41 285 264 123 0 chr13 72510615 72510721 -29362448 - MER53 DNA DNA -69 120 2 309 258 0 11 chr13 72510729 72510818 -29362351 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 218 222 0 0 chr13 72511362 72511407 -29361762 + (TA)n Simple_repeat Simple_repeat 2 46 0 939 224 112 66 chr13 72511477 72511913 -29361256 - MLT1C LTR MaLR 0 467 1 2399 69 0 3 chr13 72512113 72512417 -29360752 - AluY SINE Alu -8 303 1 272 120 20 0 chr13 72514585 72514635 -29358534 + GA-rich Low_complexity Low_complexity 1 51 0 7552 45 1 1 chr13 72514895 72516583 -29356586 + L1PA4 LINE L1 4450 6138 -17 6545 26 0 0 chr13 72516583 72517345 -29355824 + L1PA3 LINE L1 5390 6152 -3 3957 201 61 18 chr13 72518230 72519171 -29353998 + L1MC3 LINE L1 6775 7755 -30 28 0 0 0 chr13 72519185 72519213 -29353956 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 72519299 72519321 -29353848 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 72519656 72519686 -29353483 + AT_rich Low_complexity Low_complexity 1 30 0 217 374 76 38 chr13 72520442 72520573 -29352596 - L2 LINE L2 -8 3264 3129 405 0 0 0 chr13 72522675 72522720 -29350449 + (TA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr13 72523073 72523096 -29350073 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 72523650 72523680 -29349489 + AT_rich Low_complexity Low_complexity 1 30 0 245 365 127 11 chr13 72523711 72523900 -29349269 - MIR SINE MIR -21 241 31 231 103 0 0 chr13 72523937 72523976 -29349193 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr13 72525071 72525099 -29348070 + AT_rich Low_complexity Low_complexity 1 28 0 317 307 71 72 chr13 72526293 72526660 -29346509 - MLT1G LTR MaLR -36 519 144 252 320 29 0 chr13 72526766 72526869 -29346300 - MLT1G-int LTR MaLR 0 1371 1266 2101 111 54 28 chr13 72527036 72527389 -29345780 - THE1B LTR MaLR -2 362 1 10932 118 1 2 chr13 72527389 72528970 -29344199 - THE1B-int LTR MaLR 0 1580 2 2094 136 48 20 chr13 72528971 72529325 -29343844 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr13 72529651 72529681 -29343488 + AT_rich Low_complexity Low_complexity 1 30 0 404 356 64 5 chr13 72530387 72530658 -29342511 - MLT1H1 LTR MaLR 0 555 241 5372 216 46 30 chr13 72531302 72532633 -29340536 + L1MC1 LINE L1 3499 4808 -1525 3635 98 26 4 chr13 72532633 72533165 -29340004 + L1PA11 LINE L1 5625 6168 -6 5372 216 46 30 chr13 72533165 72534620 -29338549 + L1MC1 LINE L1 4808 6333 0 1069 339 28 21 chr13 72535113 72535647 -29337522 - ERVL LTR ERVL -1760 4004 3467 22 35 0 0 chr13 72536039 72536068 -29337101 + AT_rich Low_complexity Low_complexity 1 29 0 893 184 35 0 chr13 72536202 72536376 -29336793 + Tigger1 DNA MER2_type 29 208 -2210 1412 160 4 8 chr13 72536376 72536626 -29336543 + L1PA15 LINE L1 5911 6159 -6 255 280 65 56 chr13 72537486 72537593 -29335576 - L2 LINE L2 -1 3312 3205 21 89 0 0 chr13 72537770 72537826 -29335343 + AT_rich Low_complexity Low_complexity 1 56 0 4220 212 5 8 chr13 72538239 72539188 -29333981 + L1 LINE L1 3840 4785 -1361 3841 35 2 0 chr13 72539525 72539986 -29333183 + L1PA3 LINE L1 5566 6027 -128 5347 183 40 14 chr13 72540091 72541520 -29331649 + L1MA4A LINE L1 4192 5696 -607 3380 84 16 0 chr13 72541520 72541971 -29331198 - LTR22A LTR ERVK 0 458 1 5347 183 40 14 chr13 72541971 72542591 -29330578 + L1MA4A LINE L1 5696 6298 -5 24 0 0 0 chr13 72543338 72543362 -29329807 + AT_rich Low_complexity Low_complexity 1 24 0 1443 12 0 0 chr13 72543803 72543968 -29329201 + L1PA5 LINE L1 5981 6145 -9 2503 322 78 18 chr13 72544026 72545773 -29327396 - L1MEc LINE L1 -4438 1958 107 2039 100 0 0 chr13 72545807 72546076 -29327093 - AluSq SINE Alu -15 298 30 22 70 0 0 chr13 72546076 72546119 -29327050 + AT_rich Low_complexity Low_complexity 1 43 0 181 396 61 25 chr13 72546311 72546508 -29326661 - L2 LINE L2 -204 3068 2865 183 386 23 41 chr13 72547289 72547460 -29325709 + L2 LINE L2 2897 3064 -208 252 0 0 0 chr13 72547888 72547916 -29325253 + (TA)n Simple_repeat Simple_repeat 1 28 0 238 351 65 39 chr13 72548422 72548576 -29324593 - L2 LINE L2 -2 3270 3113 226 305 146 0 chr13 72548576 72548658 -29324511 - L2 LINE L2 -14 3299 3206 31 58 0 0 chr13 72549522 72549574 -29323595 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr13 72549604 72549627 -29323542 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 72549777 72549800 -29323369 + AT_rich Low_complexity Low_complexity 1 23 0 347 301 71 22 chr13 72550061 72550244 -29322925 - MLT1F1 LTR MaLR 0 567 376 368 274 95 69 chr13 72550575 72551039 -29322130 + L1MDb LINE L1 769 1244 -5165 556 320 87 68 chr13 72551053 72551422 -29321747 + L1M3c LINE L1 178 793 -5510 1309 258 68 52 chr13 72551930 72552802 -29320367 + L1M3c LINE L1 804 1797 -4516 571 268 27 14 chr13 72553002 72553222 -29319947 + L1MDb LINE L1 2042 2264 -4144 1959 117 14 3 chr13 72553240 72553542 -29319627 + AluSq SINE Alu 1 305 0 23 0 0 0 chr13 72553578 72553601 -29319568 + AT_rich Low_complexity Low_complexity 1 23 0 605 303 72 0 chr13 72553613 72553903 -29319266 + L1MDb LINE L1 2396 2706 -3700 * 1626 293 26 23 chr13 72553886 72554148 -29319021 + L1MDb LINE L1 2606 2866 -3540 2206 93 0 0 chr13 72554148 72554438 -29318731 + AluSx SINE Alu 1 290 -22 1626 293 26 23 chr13 72554438 72554875 -29318294 + L1MDb LINE L1 2866 3307 -3099 1664 153 23 39 chr13 72554896 72555204 -29317965 + AluSx SINE Alu 1 303 -9 2359 229 18 46 chr13 72555210 72555922 -29317247 + L1MDb LINE L1 3465 4156 -2250 2254 164 17 31 chr13 72555922 72556336 -29316833 + MSTB LTR MaLR 17 424 -2 3291 217 45 58 chr13 72556351 72556750 -29316419 + L1MDb LINE L1 4185 4588 -1818 1859 131 18 14 chr13 72556750 72557033 -29316136 + AluSx SINE Alu 11 294 -18 3291 217 45 58 chr13 72557033 72557645 -29315524 + L1MDb LINE L1 4588 5182 -1224 4125 134 40 4 chr13 72557645 72558323 -29314846 + L1PA16 LINE L1 5456 6157 -9 1489 250 102 25 chr13 72559257 72559817 -29313352 - MER92B LTR ERV1 0 636 34 273 151 198 12 chr13 72559827 72559913 -29313256 + MER21B LTR ERV1 400 501 -362 3630 203 63 30 chr13 72559927 72560625 -29312544 + L1MB2 LINE L1 5165 5929 -502 2162 91 39 0 chr13 72560625 72560911 -29312258 - AluSx SINE Alu -15 297 1 3630 203 63 30 chr13 72560911 72561432 -29311737 + L1MB2 LINE L1 5929 6431 0 1424 255 79 48 chr13 72561430 72562116 -29311053 + L1MDa LINE L1 1369 2047 -4493 * 207 0 0 0 chr13 72563152 72563175 -29309994 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 3529 203 48 37 chr13 72563229 72564717 -29308452 - L1MD1 LINE L1 -61 6181 4678 202 172 0 62 chr13 72564731 72564795 -29308374 + A-rich Low_complexity Low_complexity 1 60 0 24 53 0 0 chr13 72565075 72565113 -29308056 + AT_rich Low_complexity Low_complexity 1 38 0 240 293 24 0 chr13 72565222 72565304 -29307865 + L1MC4a LINE L1 6613 6696 -1112 241 291 23 0 chr13 72565683 72565769 -29307400 + L1MC4 LINE L1 7156 7243 -799 254 378 31 5 chr13 72565792 72565985 -29307184 + L1MC4a LINE L1 7218 7415 -393 239 261 39 31 chr13 72566075 72566205 -29306964 + L1MC4 LINE L1 7542 7672 -370 1031 253 66 10 chr13 72566347 72566651 -29306518 + LTR40b LTR ERVL 142 462 0 501 336 81 44 chr13 72567061 72567513 -29305656 - L1MD1 LINE L1 -1982 4164 3689 1801 146 11 0 chr13 72567513 72567781 -29305388 - AluSx SINE Alu -39 273 3 501 336 81 44 chr13 72567781 72567848 -29305321 - L1MD1 LINE L1 -2457 3689 3626 7071 267 25 27 chr13 72567852 72569850 -29303319 + L1M2 LINE L1 1 1994 -4855 5793 218 20 45 chr13 72570000 72570180 -29302989 + L1M2 LINE L1 2641 2824 -4024 2075 123 0 10 chr13 72570180 72570489 -29302680 + AluSx SINE Alu 1 306 -6 5793 218 20 45 chr13 72570489 72571276 -29301893 + L1M2 LINE L1 2824 3629 -3219 2024 126 0 31 chr13 72571276 72571593 -29301576 + AluSp SINE Alu 1 307 -6 5793 218 20 45 chr13 72571593 72572179 -29300990 + L1M2 LINE L1 3629 4136 -2712 193 29 29 29 chr13 72572179 72572214 -29300955 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 5793 218 20 45 chr13 72572214 72572630 -29300539 + L1M2 LINE L1 4136 4561 -2287 259 317 7 41 chr13 72672945 72673090 -29200079 + MLT1J LTR MaLR 41 180 -331 23 0 0 0 chr13 72673795 72673818 -29199351 + AT_rich Low_complexity Low_complexity 1 23 0 595 313 42 10 chr13 72674996 72675188 -29197981 + MIR SINE MIR 20 217 -45 2115 215 43 30 chr13 72676024 72676523 -29196646 - MER50 LTR ERV1 -193 541 33 2105 124 51 28 chr13 72676523 72676879 -29196290 - THE1B LTR MaLR 0 364 1 2115 215 43 30 chr13 72676879 72676913 -29196256 - MER50 LTR ERV1 -701 33 1 285 94 38 0 chr13 72677450 72677503 -29195666 + AluJ/FLAM SINE Alu 32 86 -216 3593 206 49 7 chr13 72677603 72678436 -29194733 + L1MA9 LINE L1 3699 4566 -1580 2237 139 20 15 chr13 72678443 72678852 -29194317 - Tigger3b DNA MER2_type -474 757 347 467 237 21 0 chr13 72678891 72678988 -29194181 - Tigger3b DNA MER2_type -1130 101 3 2133 121 3 0 chr13 72679147 72679444 -29193725 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 72679504 72679525 -29193644 + AT_rich Low_complexity Low_complexity 1 21 0 237 316 89 0 chr13 72679799 72679878 -29193291 + LTR16C LTR ERVL 91 176 -315 314 361 53 32 chr13 72680130 72680415 -29192754 + HERV16 LTR ERVL 358 648 -4348 600 261 60 11 chr13 72680506 72680690 -29192479 - LTR40b LTR ERVL 0 462 270 371 354 36 49 chr13 72680904 72681350 -29191819 - MLT1J LTR MaLR 0 511 72 385 184 81 0 chr13 72681583 72681670 -29191499 + L1MC3 LINE L1 7473 7566 -219 1318 220 22 28 chr13 72681791 72682109 -29191060 + L1MA9 LINE L1 4826 5141 -1005 4960 184 33 18 chr13 72682130 72683173 -29189996 + L1MA9 LINE L1 5254 6311 -1 1169 291 10 3 chr13 72683850 72684139 -29189030 + MLT1E3 LTR MaLR 13 303 -321 1864 121 69 66 chr13 72684140 72684503 -29188666 - THE1B LTR MaLR 0 364 1 4114 110 42 3 chr13 72684503 72685104 -29188065 - THE1B-int LTR MaLR 0 1580 957 3574 176 39 50 chr13 72685205 72686046 -29187123 - L1MA9 LINE L1 -216 6096 5263 6910 154 22 15 chr13 72686046 72687333 -29185836 + HSMAR2 DNA Mariner 5 1301 -1 3574 176 39 50 chr13 72687333 72687426 -29185743 - L1MA9 LINE L1 -1049 5263 5170 253 264 28 14 chr13 72687417 72687489 -29185680 - L1MCb LINE L1 -5338 707 635 * 295 296 14 28 chr13 72687475 72687617 -29185552 + HAL1 LINE L1 1583 1722 -785 22 70 0 0 chr13 72687870 72687913 -29185256 + AT_rich Low_complexity Low_complexity 1 43 0 668 169 28 0 chr13 72688298 72688440 -29184729 + L1MA8 LINE L1 6141 6286 -5 2361 77 3 0 chr13 72689071 72689368 -29183801 + AluY SINE Alu 1 298 -13 321 186 24 0 chr13 72689406 72689530 -29183639 + (TA)n Simple_repeat Simple_repeat 1 127 0 216 0 0 0 chr13 72689647 72689671 -29183498 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 1506 189 13 27 chr13 72690353 72690654 -29182515 + AluJb SINE Alu 2 298 -14 16681 72 4 2 chr13 72690938 72693203 -29179966 - L1P LINE L1 -1328 4818 2550 276 273 34 23 chr13 72693276 72693364 -29179805 - L2 LINE L2 -2 3270 3182 958 63 0 0 chr13 72693366 72693492 -29179677 + L1P LINE L1 2436 2561 -3585 25 31 0 0 chr13 72693919 72693951 -29179218 + AT_rich Low_complexity Low_complexity 1 32 0 200 306 112 53 chr13 72694064 72694234 -29178935 + MIR SINE MIR 63 242 -20 431 297 100 47 chr13 72694741 72695041 -29178128 + MLT1I LTR MaLR 92 407 -2 562 332 5 11 chr13 72696089 72696276 -29176893 + LTR33 LTR ERVL 27 212 -309 1559 170 95 0 chr13 72696974 72697257 -29175912 - LTR45B LTR ERV1 -177 312 3 30 0 0 0 chr13 72697472 72697502 -29175667 + AT_rich Low_complexity Low_complexity 1 30 0 2698 159 8 22 chr13 72698153 72698644 -29174525 - MER31A LTR ERV1 0 485 2 21 36 0 0 chr13 72700399 72700427 -29172742 + AT_rich Low_complexity Low_complexity 1 28 0 2259 93 10 0 chr13 72700546 72700856 -29172313 + AluSp SINE Alu 1 313 0 4042 136 34 57 chr13 72701787 72702591 -29170578 + LTR1 LTR ERV1 1 785 0 1140 255 74 34 chr13 72703064 72703656 -29169513 - MER114 LTR ERV -25 623 8 6688 70 9 0 chr13 72706499 72707787 -29165382 - L1PA6 LINE L1 0 6154 4856 543 269 28 0 chr13 72707895 72708036 -29165133 + MLT1A1 LTR MaLR 167 311 -54 4368 12 0 0 chr13 72708036 72708533 -29164636 - L1HS LINE L1 0 6155 5659 378 140 0 0 chr13 72708537 72708594 -29164575 + MLT1A1 LTR MaLR 309 365 0 231 229 16 0 chr13 72708594 72708655 -29164514 + MIR SINE MIR 198 259 -3 409 232 0 0 chr13 72708985 72709067 -29164102 + MER45A DNA AcHobo 58 139 -39 2114 88 3 13 chr13 72709085 72709393 -29163776 - AluY SINE Alu -6 305 1 858 300 14 18 chr13 72711599 72711882 -29161287 + MER87 LTR ERV1 194 475 -66 3160 174 40 22 chr13 72711888 72712515 -29160654 + LTR9B LTR ERV1 7 644 0 243 259 0 0 chr13 72712635 72712689 -29160480 + LTR53 LTR ERVL 1 54 -465 4174 231 52 42 chr13 72712790 72715002 -29158167 - L1MEc LINE L1 -2643 3572 1338 798 149 0 0 chr13 72715384 72715505 -29157664 + THE1B LTR MaLR 44 164 -200 1949 135 0 0 chr13 72715507 72715821 -29157348 - AluSx SINE Alu 0 314 1 1119 305 49 31 chr13 72715821 72716181 -29156988 - L1M4 LINE L1 -1769 4377 4025 2577 192 19 55 chr13 72716181 72716816 -29156353 + LTR9 LTR ERV1 1 612 0 1119 305 49 31 chr13 72716816 72717169 -29156000 - L1M4 LINE L1 -2121 4025 3651 695 306 72 81 chr13 72717168 72717765 -29155404 - L1MEc LINE L1 -5081 1315 733 * 1577 149 8 0 chr13 72717765 72718007 -29155162 - AluSx SINE Alu -68 244 1 695 306 72 81 chr13 72718007 72718598 -29154571 - L1MEc LINE L1 -5663 733 138 26 30 0 0 chr13 72718954 72718987 -29154182 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr13 72719228 72719260 -29153909 + AT_rich Low_complexity Low_complexity 1 32 0 35 24 0 0 chr13 72720018 72720060 -29153109 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr13 72720236 72720261 -29152908 + AT_rich Low_complexity Low_complexity 1 25 0 4664 137 17 16 chr13 72720562 72721395 -29151774 - L1MA3 LINE L1 -15 6290 5457 2535 214 26 2 chr13 72721395 72721895 -29151274 - L1 LINE L1 -7044 521 10 23 33 0 0 chr13 72721895 72721925 -29151244 + AT_rich Low_complexity Low_complexity 1 30 0 350 276 83 16 chr13 72722217 72722408 -29150761 - L1ME LINE L1 -389 5775 5573 24 67 0 0 chr13 72722453 72722498 -29150671 + AT_rich Low_complexity Low_complexity 1 45 0 276 30 0 0 chr13 72725040 72725073 -29148096 + (TTA)n Simple_repeat Simple_repeat 2 34 0 2679 113 36 24 chr13 72726067 72726517 -29146652 + L1MA1 LINE L1 5846 6300 -2 22 35 0 0 chr13 72726517 72726546 -29146623 + AT_rich Low_complexity Low_complexity 1 29 0 1853 192 29 2 chr13 72726885 72727297 -29145872 - L1MA6 LINE L1 -4 6296 5874 21 0 0 0 chr13 72728490 72728511 -29144658 + AT_rich Low_complexity Low_complexity 1 21 0 530 281 9 78 chr13 72729502 72729719 -29143450 - MIR SINE MIR -27 235 34 255 399 72 49 chr13 72730942 72731331 -29141838 - L2 LINE L2 -3 3269 2872 1843 89 107 41 chr13 72731351 72731642 -29141527 + AluSx SINE Alu 1 310 -2 814 247 100 47 chr13 72732045 72732422 -29140747 - MER57A LTR ERV1 -3 399 3 2025 80 76 4 chr13 72732522 72732797 -29140372 - AluSp SINE Alu -18 295 1 25 65 0 0 chr13 72733062 72733108 -29140061 + AT_rich Low_complexity Low_complexity 1 46 0 1872 204 40 23 chr13 72733442 72733869 -29139300 + Tigger2a DNA MER2_type 1 434 0 218 253 89 13 chr13 72734610 72734689 -29138480 + MIR SINE MIR 123 207 -55 24 0 0 0 chr13 72734881 72734905 -29138264 + AT_rich Low_complexity Low_complexity 1 24 0 705 93 0 0 chr13 72735213 72735310 -29137859 + AluY SINE Alu 39 135 -176 2078 64 4 0 chr13 72735310 72735575 -29137594 + AluY SINE Alu 1 266 -45 2673 0 0 77 chr13 72735990 72736326 -29136843 - AluYa5 SINE Alu -1 310 1 244 305 42 68 chr13 72737801 72737919 -29135250 + L2 LINE L2 3158 3272 -41 240 267 33 33 chr13 72737919 72738009 -29135160 + MIR SINE MIR 116 205 -57 26 50 0 0 chr13 72738009 72738049 -29135120 + AT_rich Low_complexity Low_complexity 1 40 0 27 73 0 0 chr13 72738527 72738582 -29134587 + AT_rich Low_complexity Low_complexity 1 55 0 1254 222 75 60 chr13 72738616 72738798 -29134371 - MER65C LTR ERV1 0 461 283 4576 30 2 0 chr13 72738798 72739341 -29133828 - L1PA3 LINE L1 0 6155 5612 1254 222 75 60 chr13 72739341 72739609 -29133560 - MER65C LTR ERV1 -178 283 4 207 0 0 0 chr13 72739610 72739633 -29133536 + (TA)n Simple_repeat Simple_repeat 2 24 0 197 292 104 47 chr13 72740056 72740248 -29132921 + L2 LINE L2 1494 1696 -1618 202 306 0 0 chr13 72740546 72740608 -29132561 + MIR SINE MIR 75 136 -126 2153 83 20 3 chr13 72740669 72740969 -29132200 + AluY SINE Alu 1 305 -6 3034 91 5 0 chr13 72742309 72742740 -29130429 - L1PA7 LINE L1 -2257 3889 3457 9884 90 15 0 chr13 72742740 72744985 -29128184 + L1PA7 LINE L1 3909 6141 -13 21 36 0 0 chr13 72745252 72745280 -29127889 + AT_rich Low_complexity Low_complexity 1 28 0 284 174 0 14 chr13 72745461 72745530 -29127639 + (TA)n Simple_repeat Simple_repeat 2 69 0 781 282 19 33 chr13 72745543 72745908 -29127261 + L1M4 LINE L1 2114 2473 -3673 3180 237 41 10 chr13 72746110 72747116 -29126053 - L1MB8 LINE L1 -13 6165 5127 24 32 0 0 chr13 72747529 72747560 -29125609 + AT_rich Low_complexity Low_complexity 1 31 0 206 173 13 67 chr13 72748909 72748984 -29124185 + T-rich Low_complexity Low_complexity 3 73 0 269 235 0 12 chr13 72749023 72749104 -29124065 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 189 0 0 0 chr13 72749288 72749309 -29123860 + (CA)n Simple_repeat Simple_repeat 2 22 0 1018 323 48 10 chr13 72749334 72749727 -29123442 + L1M4b LINE L1 683 1090 -5769 533 238 56 24 chr13 72749742 72749982 -29123187 + L1M4b LINE L1 1197 1438 -5417 230 302 116 39 chr13 72750352 72750481 -29122688 - LTR16A LTR ERVL -15 435 297 31 26 0 0 chr13 72750525 72750563 -29122606 + AT_rich Low_complexity Low_complexity 1 38 0 251 366 57 21 chr13 72751850 72752186 -29120983 + L1MD3 LINE L1 824 1171 -5967 1817 172 91 27 chr13 72752211 72752737 -29120432 + MLT2A2 LTR ERVL 1 554 0 603 290 78 72 chr13 72753120 72753788 -29119381 + L1MD3 LINE L1 1571 2251 -4887 2020 125 10 0 chr13 72753788 72754092 -29119077 + AluSc SINE Alu 3 309 0 603 290 78 72 chr13 72754092 72754596 -29118573 + L1MD3 LINE L1 2251 2750 -4388 22 80 0 0 chr13 72755299 72755349 -29117820 + AT_rich Low_complexity Low_complexity 1 50 0 27 62 0 0 chr13 72755429 72755477 -29117692 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr13 72755568 72755590 -29117579 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 72755645 72755674 -29117495 + AT_rich Low_complexity Low_complexity 1 29 0 357 335 51 13 chr13 72757067 72757225 -29115944 + MIR SINE MIR 13 176 -86 1366 174 129 0 chr13 72758036 72758300 -29114869 - MER1B DNA MER1_type -41 298 1 27 96 0 0 chr13 72759447 72759530 -29113639 + AT_rich Low_complexity Low_complexity 1 83 0 297 61 61 0 chr13 72759544 72759593 -29113576 - L1MA7 LINE L1 -2 6289 6238 378 172 26 60 chr13 72759602 72759718 -29113451 + L1MA7 LINE L1 6172 6283 -8 2956 211 88 43 chr13 72759745 72760629 -29112540 + MER52A LTR ERV1 1 999 -681 779 294 6 0 chr13 72760713 72761033 -29112136 + L1MD3 LINE L1 3673 3994 -2963 * 1186 259 139 58 chr13 72761026 72762762 -29110407 + L1MD3 LINE L1 4999 6859 -311 426 20 0 0 chr13 72762765 72762816 -29110353 + (TTG)n Simple_repeat Simple_repeat 1 51 0 1569 80 0 0 chr13 72762816 72763016 -29110153 - AluY SINE Alu -33 278 79 27 0 0 0 chr13 72763563 72763590 -29109579 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr13 72763823 72763851 -29109318 + AT_rich Low_complexity Low_complexity 1 28 0 763 279 92 71 chr13 72763895 72764793 -29108376 - L1ME3A LINE L1 0 6170 5254 237 33 0 0 chr13 72764793 72764823 -29108346 + (T)n Simple_repeat Simple_repeat 1 30 0 1220 169 25 0 chr13 72765233 72765470 -29107699 - L1MA3 LINE L1 0 6305 6063 566 319 102 52 chr13 72765675 72766246 -29106923 - L1ME3A LINE L1 -1594 4552 3954 254 203 16 0 chr13 72766362 72766426 -29106743 - L1MA4 LINE L1 -7 6293 6229 29 0 0 0 chr13 72766562 72766591 -29106578 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr13 72766639 72766676 -29106493 + AT_rich Low_complexity Low_complexity 1 37 0 29 47 0 0 chr13 72766788 72766831 -29106338 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr13 72766867 72766889 -29106280 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 72767079 72767103 -29106066 + AT_rich Low_complexity Low_complexity 1 24 0 475 284 58 82 chr13 72767214 72767678 -29105491 - L1ME3A LINE L1 -2978 3168 2716 842 371 94 25 chr13 72768071 72769224 -29103945 - L2 LINE L2 -1047 2267 1035 28 61 0 0 chr13 72770394 72770443 -29102726 + AT_rich Low_complexity Low_complexity 1 49 0 24 113 0 0 chr13 72770461 72770576 -29102593 + AT_rich Low_complexity Low_complexity 1 115 0 21 0 0 0 chr13 72771215 72771236 -29101933 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 72771445 72771481 -29101688 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 72772837 72772873 -29100296 + AT_rich Low_complexity Low_complexity 1 36 0 203 115 16 49 chr13 72773084 72773145 -29100024 + (TA)n Simple_repeat Simple_repeat 2 60 0 23 33 0 0 chr13 72773212 72773242 -29099927 + AT_rich Low_complexity Low_complexity 1 30 0 271 232 29 0 chr13 72773383 72773452 -29099717 + MLT1I LTR MaLR 66 136 -273 284 376 117 6 chr13 72773601 72773763 -29099406 + MLT1I LTR MaLR 152 331 -78 331 239 23 11 chr13 72773766 72773854 -29099315 - L1MC4 LINE L1 -1340 6702 6614 319 241 72 0 chr13 72773786 72773869 -29099300 + L1MC4 LINE L1 6614 6702 -1340 * 201 74 0 0 chr13 72774198 72774225 -29098944 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr13 72775006 72775028 -29098141 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 72775846 72775874 -29097295 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 72776186 72776214 -29096955 + AT_rich Low_complexity Low_complexity 1 28 0 1975 158 0 3 chr13 72776233 72776543 -29096626 - AluSx SINE Alu -3 309 1 23 33 0 0 chr13 72776815 72776845 -29096324 + AT_rich Low_complexity Low_complexity 1 30 0 238 220 99 73 chr13 72777101 72777292 -29095877 + L1ME2 LINE L1 5078 5273 -873 21 57 0 0 chr13 72777396 72777431 -29095738 + AT_rich Low_complexity Low_complexity 1 35 0 238 296 12 0 chr13 72777506 72777587 -29095582 + L1ME2 LINE L1 5494 5575 -599 5489 209 8 54 chr13 72777594 72779069 -29094100 + L1PB4 LINE L1 3893 5300 -846 5112 196 36 18 chr13 72779086 72785263 -29087906 + L1PA11 LINE L1 10 6488 -1 4587 161 27 64 chr13 72785257 72785570 -29087599 + L1PB4 LINE L1 5272 5595 -561 * 1934 84 3 77 chr13 72785570 72785869 -29087300 + AluSx SINE Alu 7 305 0 199 0 0 0 chr13 72785869 72785891 -29087278 + (TAA)n Simple_repeat Simple_repeat 2 180 0 4587 161 27 64 chr13 72785891 72786015 -29087154 + L1PB4 LINE L1 5595 5722 -434 2277 52 0 0 chr13 72786015 72786284 -29086885 + AluY SINE Alu 37 305 -6 4587 161 27 64 chr13 72786284 72786743 -29086426 + L1PB4 LINE L1 5722 6148 -8 1143 256 68 53 chr13 72787063 72787605 -29085564 + L1ME2 LINE L1 5601 6150 -14 6205 163 45 7 chr13 72788093 72789278 -29083891 + Tigger3b DNA MER2_type 2 1231 0 319 186 0 0 chr13 72790327 72790386 -29082783 + MLT1G LTR MaLR 532 590 0 722 316 69 63 chr13 72790408 72791047 -29082122 - ERVL LTR ERVL -2989 2775 2133 723 273 0 12 chr13 72791221 72791393 -29081776 + MER63A DNA MER1_type 41 210 0 23 0 0 0 chr13 72791517 72791540 -29081629 + AT_rich Low_complexity Low_complexity 1 23 0 283 312 35 47 chr13 72792405 72792575 -29080594 - LTR16C LTR ERVL -13 478 311 561 258 73 17 chr13 72792831 72793009 -29080160 + MER5A DNA MER1_type 1 188 -1 482 334 104 41 chr13 72793522 72794129 -29079040 + L1ME3A LINE L1 4691 5335 -811 387 356 29 45 chr13 72794244 72794556 -29078613 - L2 LINE L2 -1 3312 3006 467 346 19 14 chr13 72794568 72794776 -29078393 - L2 LINE L2 -577 2737 2529 366 309 93 20 chr13 72794824 72795028 -29078141 - L2 LINE L2 -1071 2243 2025 3101 141 12 4 chr13 72795048 72795539 -29077630 + LOR1a LTR ERV1 1 495 -2 1546 202 18 3 chr13 72795541 72795823 -29077346 + LOR1a-int LTR ERV1 4 289 -7831 248 324 132 27 chr13 72795885 72796454 -29076715 + L1ME3A LINE L1 5369 6002 -168 571 188 23 23 chr13 72796454 72796587 -29076582 + L1PA16 LINE L1 6033 6165 -1 248 324 132 27 chr13 72796587 72796601 -29076568 + L1ME3A LINE L1 6002 6013 -157 314 289 130 78 chr13 72796645 72796967 -29076202 - L2 LINE L2 -2120 1194 856 1592 286 73 23 chr13 72798424 72799068 -29074101 - ERVL LTR ERVL -1281 4483 3808 492 338 18 44 chr13 72799284 72799718 -29073451 - ERVL LTR ERVL -2244 3520 3029 2035 90 27 36 chr13 72799771 72800072 -29073097 + AluSg1 SINE Alu 2 299 -10 211 253 13 13 chr13 72800435 72800510 -29072659 + (TA)n Simple_repeat Simple_repeat 1 75 0 218 384 132 24 chr13 72800731 72801127 -29072042 + L2 LINE L2 2090 2441 -873 2073 119 0 14 chr13 72801127 72801444 -29071725 - AluSx SINE Alu 0 312 1 218 384 132 24 chr13 72801444 72801727 -29071442 + L2 LINE L2 2441 2843 -471 561 114 8 73 chr13 72801731 72801854 -29071315 - L1PA13 LINE L1 0 6163 6049 269 298 9 18 chr13 72802574 72802688 -29070481 + (TATATG)n Simple_repeat Simple_repeat 3 115 0 27 29 0 0 chr13 72802921 72802955 -29070214 + AT_rich Low_complexity Low_complexity 1 34 0 1906 62 4 0 chr13 72803118 72803374 -29069795 - L1PA14 LINE L1 -3 6158 5902 22 35 0 0 chr13 72804090 72804119 -29069050 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 72804206 72804235 -29068934 + AT_rich Low_complexity Low_complexity 1 29 0 349 385 44 32 chr13 72804361 72804704 -29068465 - L2 LINE L2 -50 3263 2917 2182 148 36 24 chr13 72805020 72805439 -29067730 + L1PA16 LINE L1 5742 6165 -1 1781 141 37 10 chr13 72805450 72805749 -29067420 + AluSg SINE Alu 1 307 -3 193 333 138 29 chr13 72805753 72805963 -29067206 - L2 LINE L2 -778 2536 2304 * 354 345 87 4 chr13 72805958 72806187 -29066982 + L2 LINE L2 3066 3313 0 343 167 36 0 chr13 72806187 72806325 -29066844 + (TA)n Simple_repeat Simple_repeat 1 143 0 2097 118 0 7 chr13 72806327 72806624 -29066545 - AluSq SINE Alu -18 295 1 380 352 83 35 chr13 72806643 72806881 -29066288 - L2 LINE L2 -1016 2298 2073 336 119 0 0 chr13 72806881 72806940 -29066229 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 380 352 83 35 chr13 72806940 72807161 -29066008 - L2 LINE L2 -1241 2073 1817 521 209 0 0 chr13 72807674 72807784 -29065385 + L1PB3 LINE L1 6038 6147 -7 188 67 33 0 chr13 72807788 72807818 -29065351 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 25 65 0 0 chr13 72808139 72808185 -29064984 + AT_rich Low_complexity Low_complexity 1 46 0 489 314 46 54 chr13 72809046 72809076 -29064093 + L1ME LINE L1 613 642 -5463 2890 3 0 0 chr13 72809076 72809391 -29063778 + AluYb8 SINE Alu 1 315 -3 489 314 46 54 chr13 72809391 72809757 -29063412 + L1ME LINE L1 642 1042 -5063 261 276 111 33 chr13 72809783 72810026 -29063143 + L1ME LINE L1 1055 1316 -4764 459 279 47 17 chr13 72810218 72810390 -29062779 + MIR SINE MIR 39 215 -47 412 327 6 6 chr13 72810569 72810725 -29062444 + MIR SINE MIR 48 203 -59 283 285 55 40 chr13 72810829 72811029 -29062140 - L1ME LINE L1 -461 5660 5458 226 286 16 16 chr13 72811520 72811583 -29061586 - L3 LINE CR1 -33 1544 1482 205 361 0 12 chr13 72811615 72811698 -29061471 - L3 LINE CR1 -184 1393 1312 246 42 62 0 chr13 72812066 72812114 -29061055 + (TA)n Simple_repeat Simple_repeat 1 51 0 507 60 0 0 chr13 72814969 72815036 -29058133 + (TC)n Simple_repeat Simple_repeat 1 67 0 2148 265 112 31 chr13 72815247 72816537 -29056632 + L1MDa LINE L1 1255 2648 -3892 1971 118 11 0 chr13 72816954 72817251 -29055918 - AluSp SINE Alu 0 300 1 1927 133 3 0 chr13 72817274 72817559 -29055610 - AluSx SINE Alu -26 286 1 272 291 155 0 chr13 72817662 72817765 -29055404 - L2 LINE L2 -8 3305 3187 23 0 0 0 chr13 72817887 72817910 -29055259 + AT_rich Low_complexity Low_complexity 1 23 0 1410 300 71 14 chr13 72819668 72820188 -29052981 - HERV16 LTR ERVL -2752 2244 1695 473 379 44 7 chr13 72820220 72820492 -29052677 - HERV16 LTR ERVL -3449 1547 1266 836 325 70 41 chr13 72821211 72821457 -29051712 - LTR16B LTR ERVL -4 460 223 4251 183 15 50 chr13 72821457 72821551 -29051618 + MER49 LTR ERV1 1 97 -826 2293 56 29 20 chr13 72821551 72821857 -29051312 + AluY SINE Alu 1 309 -2 4251 183 15 50 chr13 72821857 72822389 -29050780 + MER49 LTR ERV1 97 584 -339 1897 107 7 20 chr13 72822389 72822687 -29050482 + AluSx SINE Alu 1 294 -18 4251 183 15 50 chr13 72822687 72823016 -29050153 + MER49 LTR ERV1 584 923 0 836 325 70 41 chr13 72823016 72823209 -29049960 - LTR16B LTR ERVL -241 223 8 420 259 121 9 chr13 72823231 72823347 -29049822 + MER45A DNA AcHobo 8 136 -42 24 0 0 0 chr13 72825339 72825363 -29047806 + AT_rich Low_complexity Low_complexity 1 24 0 200 246 0 116 chr13 72826058 72826127 -29047042 + MIR SINE MIR 194 254 -8 2459 219 53 17 chr13 72826358 72826962 -29046207 - MER50 LTR ERV1 0 734 109 768 182 25 25 chr13 72826970 72827129 -29046040 - MER50 LTR ERV1 -566 168 10 2474 162 14 0 chr13 72827142 72827556 -29045613 - MSTA LTR MaLR 0 428 9 892 127 8 0 chr13 72828787 72828921 -29044248 + L1PA7 LINE L1 1 135 -6326 21106 89 12 16 chr13 72828924 72832897 -29040272 + L1PA7 LINE L1 2514 6467 -2 201 94 0 0 chr13 72832989 72833021 -29040148 + (TC)n Simple_repeat Simple_repeat 2 33 0 226 268 0 0 chr13 72833618 72833689 -29039480 + L1MC4 LINE L1 6640 6710 -1332 802 239 6 6 chr13 72833786 72833953 -29039216 + FAM SINE Alu 2 168 -7 2119 194 43 2 chr13 72834070 72834513 -29038656 - LOR1b LTR ERV1 0 461 1 1932 146 7 0 chr13 72835231 72835532 -29037637 - AluSx SINE Alu -9 303 1 1713 171 34 28 chr13 72835754 72835921 -29037248 + MER46B DNA MER2_type 3 50 -2681 2135 96 7 0 chr13 72835921 72836201 -29036968 + AluSp SINE Alu 17 298 -15 1713 171 34 28 chr13 72836201 72836390 -29036779 + MER46B DNA MER2_type 50 236 0 204 97 0 0 chr13 72836639 72836670 -29036499 + (CA)n Simple_repeat Simple_repeat 2 32 0 2401 68 0 0 chr13 72836807 72837101 -29036068 + AluY SINE Alu 1 294 -17 234 136 0 0 chr13 72837322 72837366 -29035803 + (TC)n Simple_repeat Simple_repeat 1 44 0 1742 113 34 132 chr13 72838355 72838771 -29034398 + THE1C LTR MaLR 1 375 0 1553 223 17 50 chr13 72838867 72839270 -29033899 + MLT1B LTR MaLR 1 390 0 1381 264 21 46 chr13 72839481 72839955 -29033214 - MLT1D LTR MaLR 0 505 44 263 276 106 32 chr13 72840140 72840263 -29032906 + L2 LINE L2 3138 3269 -44 23 0 0 0 chr13 72841830 72841853 -29031316 + AT_rich Low_complexity Low_complexity 1 23 0 670 372 104 40 chr13 72844238 72845319 -29027850 - L2 LINE L2 -1 3312 2149 2188 84 24 3 chr13 72846071 72846368 -29026801 - AluSc SINE Alu -6 303 1 29 0 0 0 chr13 72847290 72847319 -29025850 + AT_rich Low_complexity Low_complexity 1 29 0 532 295 14 7 chr13 72847727 72847866 -29025303 - MER63A DNA MER1_type 0 210 71 372 227 43 82 chr13 72847868 72848062 -29025107 - MER8 DNA MER2_type 0 239 1 1341 143 40 13 chr13 72848171 72848395 -29024774 - MER30 DNA MER1_type 0 230 1 1860 48 0 0 chr13 72848788 72849018 -29024151 - L1PA5 LINE L1 -3 6151 5922 216 204 0 0 chr13 72849131 72849175 -29023994 + A-rich Low_complexity Low_complexity 98 141 0 31 0 0 0 chr13 72849336 72849367 -29023802 + AT_rich Low_complexity Low_complexity 1 31 0 1241 222 28 7 chr13 72849371 72849655 -29023514 - AluJo SINE Alu -18 294 5 1397 197 74 15 chr13 72849743 72850068 -29023101 + MER2 DNA MER2_type 1 344 0 189 0 0 0 chr13 72850121 72850142 -29023027 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 681 197 158 11 chr13 72850146 72850329 -29022840 + L1MC4 LINE L1 7468 7677 -365 237 228 14 46 chr13 72850495 72850588 -29022581 - MLT1H LTR MaLR -281 128 59 377 390 10 5 chr13 72851150 72851345 -29021824 + MIR SINE MIR 31 226 -36 28 0 0 0 chr13 72851387 72851415 -29021754 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 72852137 72852164 -29021005 + AT_rich Low_complexity Low_complexity 1 27 0 280 240 155 16 chr13 72853213 72853342 -29019827 - MIR SINE MIR -39 223 77 466 15 45 0 chr13 72853360 72853426 -29019743 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1024 179 29 0 chr13 72853485 72853692 -29019477 + L1MA7 LINE L1 6054 6266 -25 652 33 22 0 chr13 72853824 72853915 -29019254 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 24 53 0 0 chr13 72854413 72854451 -29018718 + AT_rich Low_complexity Low_complexity 1 38 0 394 323 94 0 chr13 72854582 72854774 -29018395 - MER69 DNA AcHobo -2316 210 1 282 29 0 0 chr13 72854780 72854837 -29018332 + (CA)n Simple_repeat Simple_repeat 1 92 0 282 29 0 0 chr13 72854837 72854872 -29018297 + (CA)n Simple_repeat Simple_repeat 2 36 0 35 0 0 0 chr13 72854921 72854956 -29018213 + AT_rich Low_complexity Low_complexity 1 35 0 864 118 0 0 chr13 72855664 72855800 -29017369 + (TTCTCC)n Simple_repeat Simple_repeat 3 138 0 1845 149 7 0 chr13 72855804 72856099 -29017070 - AluSx SINE Alu -15 297 1 216 200 0 0 chr13 72856567 72856607 -29016562 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 40 67 0 0 chr13 72856734 72856809 -29016360 + AT_rich Low_complexity Low_complexity 1 75 0 794 240 17 6 chr13 72857370 72857545 -29015624 - MLT1D LTR MaLR 0 505 329 2115 82 0 4 chr13 72857748 72858068 -29015101 + AluY SINE Alu 1 319 0 366 23 0 0 chr13 72858202 72858245 -29014924 + (CA)n Simple_repeat Simple_repeat 2 44 0 384 173 11 65 chr13 72859612 72859797 -29013372 + (TA)n Simple_repeat Simple_repeat 1 175 0 258 175 0 120 chr13 72859736 72859936 -29013233 + (CATA)n Simple_repeat Simple_repeat 2 177 0 * 350 153 32 85 chr13 72859943 72860213 -29012956 + (CATATA)n Simple_repeat Simple_repeat 1 255 0 307 216 5 54 chr13 72860288 72860473 -29012696 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr13 72861004 72861025 -29012144 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 72863805 72863832 -29009337 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 72863993 72864014 -29009155 + AT_rich Low_complexity Low_complexity 1 21 0 3431 181 98 157 chr13 72864372 72866238 -29006931 - MER52A LTR ERV1 0 1755 1 298 244 11 33 chr13 72866355 72866445 -29006724 + HAL1 LINE L1 1451 1538 -969 598 263 83 36 chr13 72867055 72867333 -29005836 + L1 LINE L1 5041 5331 -815 1382 130 13 42 chr13 72867334 72867460 -29005709 + L1MA3 LINE L1 5731 5859 -446 1382 140 4 0 chr13 72867460 72867688 -29005481 + L1MA3 LINE L1 6075 6303 -2 1382 130 13 42 chr13 72867688 72867716 -29005453 + L1MA3 LINE L1 5859 6303 -2 1264 164 34 15 chr13 72867706 72867969 -29005200 + L1P5 LINE L1 5314 5581 -575 * 624 279 23 46 chr13 72868426 72868645 -29004524 + MER20 DNA MER1_type 1 214 -5 796 260 17 0 chr13 72868664 72868837 -29004332 - Tigger7 DNA MER2_type -528 177 2 2147 266 96 63 chr13 72868837 72870434 -29002735 - L1MDa LINE L1 -4648 1892 25 300 167 52 21 chr13 72871465 72871561 -29001608 + (TA)n Simple_repeat Simple_repeat 1 99 0 285 29 0 0 chr13 72871830 72871864 -29001305 + (TA)n Simple_repeat Simple_repeat 2 35 0 2475 58 0 0 chr13 72872067 72872375 -29000794 - AluY SINE Alu -3 308 1 27 0 0 0 chr13 72872829 72872856 -29000313 + AT_rich Low_complexity Low_complexity 1 27 0 21 89 0 0 chr13 72872875 72872931 -29000238 + AT_rich Low_complexity Low_complexity 1 56 0 34 0 0 0 chr13 72873550 72873584 -28999585 + AT_rich Low_complexity Low_complexity 1 34 0 24 67 0 0 chr13 72873598 72873643 -28999526 + AT_rich Low_complexity Low_complexity 1 45 0 1212 201 50 20 chr13 72874226 72874529 -28998640 - AluJb SINE Alu 0 312 1 511 299 123 62 chr13 72874768 72875481 -28997688 + LTR41 LTR ERVL 1 757 -16 309 366 46 29 chr13 72876385 72876560 -28996609 - MIR SINE MIR -75 187 12 955 306 26 0 chr13 72877075 72877382 -28995787 - LTR16A LTR ERVL -2 448 134 25 90 0 0 chr13 72878224 72878291 -28994878 + AT_rich Low_complexity Low_complexity 1 67 0 2626 249 12 12 chr13 72878945 72879593 -28993576 + MER82 DNA MER2_type 1 648 -5 3003 156 3 100 chr13 72880850 72881517 -28991652 + LTR26 LTR ERV1 1 602 -1 238 153 119 0 chr13 72881875 72881934 -28991235 + L1MC4 LINE L1 6658 6723 -1319 1105 227 40 20 chr13 72882718 72883022 -28990147 - L1MA10 LINE L1 -3 6331 6022 211 302 0 0 chr13 72883077 72883130 -28990039 + MIR SINE MIR 203 255 -7 1939 117 53 0 chr13 72884497 72884780 -28988389 + AluSp SINE Alu 1 298 -15 915 295 55 30 chr13 72884827 72885298 -28987871 + L1MC4a LINE L1 5483 5965 -1843 450 194 213 0 chr13 72885370 72885530 -28987639 - L1MA7 LINE L1 -14 6277 6084 3601 183 25 4 chr13 72887251 72887962 -28985207 - L1 LINE L1 -1937 4209 3484 3807 179 26 50 chr13 72887968 72888808 -28984361 + LTR1B LTR ERV1 7 826 0 3707 206 33 52 chr13 72888809 72888949 -28984220 - L1 LINE L1 -2660 3486 3345 2076 136 7 0 chr13 72888949 72889243 -28983926 + AluSq SINE Alu 1 296 -17 3707 206 33 52 chr13 72889243 72890220 -28982949 - L1 LINE L1 -2801 3345 2390 4663 188 32 16 chr13 72890223 72891686 -28981483 + L1MA4 LINE L1 4807 6291 -9 29 60 0 0 chr13 72891688 72891738 -28981431 + AT_rich Low_complexity Low_complexity 1 50 0 27 103 0 0 chr13 72891829 72891926 -28981243 + AT_rich Low_complexity Low_complexity 1 97 0 259 157 0 0 chr13 72891952 72892003 -28981166 + L1MA4A LINE L1 6251 6301 -2 1515 177 45 24 chr13 72892299 72892632 -28980537 - L1MA8 LINE L1 -177 6114 5775 813 196 16 0 chr13 72892632 72892804 -28980365 + L1MA8 LINE L1 6100 6286 -5 371 301 23 58 chr13 72893996 72894169 -28979000 - MIR SINE MIR 0 262 96 420 206 0 0 chr13 72894417 72894490 -28978679 - AluSg SINE Alu -32 277 205 726 340 37 7 chr13 72894757 72895166 -28978003 - L1MC/D LINE L1 -2039 5769 5349 427 286 8 0 chr13 72895639 72895758 -28977411 - MIR SINE MIR -26 236 117 22 35 0 0 chr13 72895973 72896002 -28977167 + AT_rich Low_complexity Low_complexity 1 29 0 468 225 179 0 chr13 72897325 72897476 -28975693 - MER46C DNA MER2_type -146 192 15 817 121 6 182 chr13 72898484 72898786 -28974383 - Tigger2a DNA MER2_type -190 254 1 1775 183 45 51 chr13 72898786 72898917 -28974252 - L1M4 LINE L1 -3155 2991 2861 2301 45 55 3 chr13 72898917 72899208 -28973961 + AluY SINE Alu 1 306 -5 1775 183 45 51 chr13 72899208 72899569 -28973600 - L1M4 LINE L1 -3285 2861 2502 328 158 0 0 chr13 72899571 72899628 -28973541 - FLAM_A SINE Alu 0 133 77 1637 100 0 0 chr13 72899628 72899838 -28973331 - AluSg SINE Alu -100 210 1 234 354 0 0 chr13 72900063 72900128 -28973041 + LTR67 LTR ERVL 132 196 -361 415 301 29 7 chr13 72900143 72900279 -28972890 + MLT1J2 LTR MaLR 1 139 -311 1542 195 22 4 chr13 72900279 72900588 -28972581 + AluJo SINE Alu 1 314 0 995 188 0 12 chr13 72900588 72900758 -28972411 + AluJo/FRAM SINE Alu 134 301 -11 1351 110 0 20 chr13 72900860 72901060 -28972109 + AluSg/x SINE Alu 117 312 0 183 280 67 40 chr13 72901106 72901181 -28971988 + MIR SINE MIR 180 256 -6 786 286 52 0 chr13 72901285 72901495 -28971674 + MIR SINE MIR 1 221 -41 2089 123 0 0 chr13 72901588 72901880 -28971289 - AluSx SINE Alu -20 292 1 213 253 189 21 chr13 72902255 72902350 -28970819 + MIR SINE MIR 36 146 -62 348 320 70 0 chr13 72902361 72902461 -28970708 - L2 LINE L2 -18 3254 3148 1562 161 99 0 chr13 72903028 72903301 -28969868 + AluJo SINE Alu 4 303 -9 245 276 138 0 chr13 72903482 72903569 -28969600 - MER117 DNA MER1_type -98 99 1 2220 104 0 13 chr13 72903590 72903899 -28969270 + AluSx SINE Alu 1 305 -7 1999 143 3 9 chr13 72903905 72904220 -28968949 + AluSq SINE Alu 1 313 0 651 133 0 0 chr13 72904576 72904674 -28968495 + LOR1a LTR ERV1 400 497 0 815 239 6 6 chr13 72904791 72904958 -28968211 - FAM SINE Alu -7 168 2 309 277 36 36 chr13 72905055 72905167 -28968002 - L1MC4 LINE L1 -1332 6710 6599 201 94 0 0 chr13 72905723 72905755 -28967414 + (GA)n Simple_repeat Simple_repeat 2 33 0 4071 74 4 0 chr13 72905847 72906386 -28966783 - L1PA7 LINE L1 -2 6152 5612 722 217 15 41 chr13 72906386 72906654 -28966515 - MER65C LTR ERV1 -150 311 4 207 0 0 0 chr13 72906655 72906678 -28966491 + (TA)n Simple_repeat Simple_repeat 2 24 0 188 292 104 47 chr13 72907101 72907293 -28965876 + L2 LINE L2 1494 1696 -1618 198 306 0 0 chr13 72907591 72907653 -28965516 + MIR SINE MIR 75 136 -126 2193 83 20 3 chr13 72907714 72908014 -28965155 + AluY SINE Alu 1 305 -6 2508 44 0 10 chr13 72910406 72910702 -28962467 - AluSg SINE Alu -17 293 1 334 159 48 0 chr13 72911005 72911068 -28962101 + MER50 LTR ERV1 1 66 -668 2218 69 7 23 chr13 72911770 72912073 -28961096 + AluY SINE Alu 1 298 -13 2515 65 7 0 chr13 72912116 72912425 -28960744 + AluSx SINE Alu 1 311 -1 2040 125 3 3 chr13 72912430 72912718 -28960451 + AluSx SINE Alu 1 288 -24 1827 128 4 0 chr13 72912990 72913247 -28959922 + AluSq SINE Alu 50 307 -6 207 0 0 0 chr13 72915057 72915080 -28958089 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2066 121 6 6 chr13 72915587 72915900 -28957269 + AluSq SINE Alu 1 313 0 275 171 24 61 chr13 72916139 72916221 -28956948 - HERVE LTR ERV1 -4641 3785 3707 1606 286 39 2 chr13 72916226 72916632 -28956537 - HERVE LTR ERV1 -5957 2469 2049 1731 228 60 6 chr13 72916756 72917103 -28956066 - HERVE LTR ERV1 -6339 2087 1722 1812 118 115 80 chr13 72917103 72917476 -28955693 - HERVE LTR ERV1 -3482 4331 3946 * 3887 215 28 7 chr13 72917459 72918204 -28954965 - HERVE LTR ERV1 -6934 1492 732 615 228 156 34 chr13 72918226 72918463 -28954706 - HERVE LTR ERV1 -6288 608 343 638 275 72 3 chr13 72968519 72968839 -28904330 - L1M4 LINE L1 -3050 3096 2755 191 329 86 50 chr13 72968906 72968936 -28904233 + L2 LINE L2 3126 3153 -119 1307 200 19 78 chr13 72968936 72969306 -28903863 - MER7A DNA MER2_type 0 346 1 191 329 86 50 chr13 72969306 72969415 -28903754 + L2 LINE L2 3153 3270 -2 21 0 0 0 chr13 72970103 72970124 -28903045 + AT_rich Low_complexity Low_complexity 1 21 0 283 237 92 13 chr13 72970258 72970410 -28902759 - L1M4 LINE L1 -2896 3250 3087 22 70 0 0 chr13 72970455 72970498 -28902671 + AT_rich Low_complexity Low_complexity 1 43 0 376 292 73 21 chr13 72970846 72971038 -28902131 - L1M4 LINE L1 -3555 2591 2390 375 276 89 95 chr13 72971210 72971291 -28901878 - L1MC4 LINE L1 -789 7172 7092 209 81 0 27 chr13 72971291 72971328 -28901841 + (TA)n Simple_repeat Simple_repeat 2 37 0 375 276 89 95 chr13 72971328 72971808 -28901361 - L1MC4 LINE L1 -869 7092 6625 305 98 0 0 chr13 72972244 72972285 -28900884 - MADE1 DNA Mariner -39 41 1 16302 97 18 10 chr13 72972303 72974595 -28898574 - HERV9 LTR ERV1 -4924 3475 1164 5704 144 7 31 chr13 72974602 72975563 -28897606 - HERV9 LTR ERV1 -7408 991 54 674 177 16 22 chr13 72975537 72975684 -28897485 - LTR12 LTR ERV1 -130 584 301 * 342 244 11 0 chr13 72975684 72975774 -28897395 - LTR30 LTR ERV1 -79 643 553 1409 129 9 132 chr13 72975775 72976100 -28897069 - LTR12 LTR ERV1 -429 285 1 8132 126 2 16 chr13 72976102 72977302 -28895867 + THE1C-int LTR MaLR 397 1580 0 228 71 0 0 chr13 72977302 72977330 -28895839 + THE1C LTR MaLR 1 28 -347 750 187 77 7 chr13 72977430 72977585 -28895584 - MER7A DNA MER2_type -182 164 1 209 219 0 61 chr13 72977600 72977682 -28895487 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 399 252 15 8 chr13 72977688 72977819 -28895350 + L1MC4 LINE L1 7911 8042 0 456 19 0 0 chr13 72979261 72979314 -28893855 + (TA)n Simple_repeat Simple_repeat 2 54 0 268 254 0 0 chr13 72979314 72979377 -28893792 - L1MC4 LINE L1 -1332 6710 6648 910 263 14 0 chr13 72979944 72980153 -28893016 - MLT1E3 LTR MaLR -390 234 23 712 284 5 0 chr13 72980154 72980348 -28892821 + MLT1C LTR MaLR 4 198 -269 4316 183 29 12 chr13 72980463 72981739 -28891430 + L1P4 LINE L1 4317 5615 -550 2391 144 6 0 chr13 72981739 72982101 -28891068 - THE1B LTR MaLR 0 364 1 4316 183 29 12 chr13 72982101 72982146 -28891023 + L1P4 LINE L1 5615 5658 -507 272 131 15 19 chr13 72982199 72982243 -28890926 - MLT2C2 LTR ERVL 0 464 429 315 0 0 0 chr13 72982243 72982278 -28890891 + (CA)n Simple_repeat Simple_repeat 2 36 0 272 131 15 19 chr13 72982278 72982300 -28890869 - MLT2C2 LTR ERVL -35 429 408 198 91 0 0 chr13 72982300 72982333 -28890836 + (GA)n Simple_repeat Simple_repeat 1 33 0 2370 93 0 13 chr13 72982357 72982670 -28890499 + AluY SINE Alu 3 311 0 1650 206 70 13 chr13 72982670 72983043 -28890126 - MLT2C2 LTR ERVL -70 394 1 22 35 0 0 chr13 72984655 72984684 -28888485 + AT_rich Low_complexity Low_complexity 1 29 0 1319 181 0 101 chr13 72984687 72985013 -28888156 - AluJb SINE Alu -17 295 3 1463 186 63 0 chr13 72985018 72985367 -28887802 - L1MC2 LINE L1 -13 6331 5961 1369 63 5 53 chr13 72985368 72985575 -28887594 - L1PA3 LINE L1 0 6155 5959 2187 226 103 18 chr13 72985575 72986755 -28886414 - L1MC2 LINE L1 -743 5403 4658 519 204 45 23 chr13 72986880 72987012 -28886157 + MLT2B1 LTR ERVL 12 146 -374 200 35 35 0 chr13 72987168 72987197 -28885972 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 9513 230 16 53 chr13 72987348 72989710 -28883459 + ERVL LTR ERVL 777 3050 -2714 651 215 24 4 chr13 72989695 72989905 -28883264 - L1MCb LINE L1 -4851 1194 1098 * 855 291 95 23 chr13 72989905 72990293 -28882876 + MER57B LTR ERV1 1 416 -18 2135 267 92 64 chr13 72990300 72991367 -28881802 - L1MCb LINE L1 -4932 1113 17 439 316 130 49 chr13 72992118 72992717 -28880452 - L2 LINE L2 0 3313 2669 261 339 47 8 chr13 72992765 72992892 -28880277 - MLT2E LTR ERVL -19 609 478 313 345 20 14 chr13 72993121 72993269 -28879900 - MLT2E LTR ERVL -474 154 6 237 377 94 11 chr13 72993282 72993473 -28879696 - L2 LINE L2 -773 2541 2335 291 336 23 23 chr13 72993627 72993755 -28879414 - L2 LINE L2 -2124 1190 1063 1033 292 46 58 chr13 72993843 72994346 -28878823 - MLT1H1 LTR MaLR 0 555 59 1987 122 0 17 chr13 72994760 72995072 -28878097 - AluSx SINE Alu 0 307 1 438 377 30 35 chr13 72995643 72996009 -28877160 + L2 LINE L2 2487 2850 -464 206 384 40 0 chr13 72996279 72996404 -28876765 + L2 LINE L2 3184 3313 0 450 53 0 0 chr13 72996904 72996961 -28876208 + (TA)n Simple_repeat Simple_repeat 2 58 0 289 294 19 0 chr13 72997012 72997133 -28876036 + L1MEc LINE L1 2283 2445 -3742 28 29 0 0 chr13 72997613 72997648 -28875521 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr13 72997920 72997956 -28875213 + AT_rich Low_complexity Low_complexity 1 36 0 246 176 0 0 chr13 72998085 72998136 -28875033 + LTR66 LTR ERVL 389 439 -171 2330 131 7 18 chr13 72998142 72998732 -28874437 - MER4A LTR ERV1 -9 655 5 261 197 0 0 chr13 72998733 72998799 -28874370 + (CATATA)n Simple_repeat Simple_repeat 1 66 0 1890 157 0 3 chr13 72999019 72999306 -28873863 - AluSx SINE Alu -26 286 1 219 211 18 18 chr13 72999336 72999393 -28873776 + CT-rich Low_complexity Low_complexity 4 60 0 275 143 0 18 chr13 73000969 73001025 -28872144 + (TA)n Simple_repeat Simple_repeat 1 55 0 273 57 0 0 chr13 73001422 73001457 -28871712 + (CA)n Simple_repeat Simple_repeat 2 36 0 279 204 114 0 chr13 73002412 73002500 -28870669 - MER103 DNA DNA -68 98 1 221 333 143 42 chr13 73002539 73002707 -28870462 - L2 LINE L2 -513 2801 2617 191 362 14 0 chr13 73002707 73002776 -28870393 + MIR3 SINE MIR 133 202 -6 24 77 0 0 chr13 73003540 73003592 -28869577 + AT_rich Low_complexity Low_complexity 1 52 0 601 243 180 19 chr13 73003676 73003882 -28869287 - MIR SINE MIR -11 251 13 413 19 19 0 chr13 73004687 73004741 -28868428 + (TG)n Simple_repeat Simple_repeat 2 56 0 195 235 0 0 chr13 73005273 73005324 -28867845 + GA-rich Low_complexity Low_complexity 2 52 0 22 35 0 0 chr13 73007723 73007752 -28865417 + AT_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr13 73008198 73008267 -28864902 + AT_rich Low_complexity Low_complexity 1 69 0 255 302 143 32 chr13 73009523 73009649 -28863520 + MIR SINE MIR 2 141 -121 28 0 0 0 chr13 73009882 73009910 -28863259 + AT_rich Low_complexity Low_complexity 1 28 0 231 365 110 28 chr13 73010111 73010256 -28862913 + L2 LINE L2 3116 3272 0 1032 189 25 15 chr13 73010951 73011147 -28862022 - MLT1A1 LTR MaLR 0 365 168 667 247 55 33 chr13 73011458 73011729 -28861440 - L1M4 LINE L1 -2572 3574 3298 328 319 147 12 chr13 73012163 73012326 -28860843 - MIR SINE MIR -57 205 21 183 156 0 0 chr13 73012406 73012438 -28860731 + (TA)n Simple_repeat Simple_repeat 2 33 0 1780 134 43 0 chr13 73013738 73014014 -28859155 - AluSx SINE Alu -24 288 1 1943 234 73 102 chr13 73014234 73015194 -28857975 + MER69B DNA AcHobo 295 1226 0 814 209 39 6 chr13 73015854 73016036 -28857133 + MER5A DNA MER1_type 1 188 -1 2117 115 10 0 chr13 73016117 73016412 -28856757 - AluSx SINE Alu -14 298 1 979 87 41 0 chr13 73016694 73016866 -28856303 + CT-rich Low_complexity Low_complexity 1 179 0 1314 208 42 11 chr13 73016872 73017015 -28856154 - AluJb SINE Alu -39 273 117 249 33 0 0 chr13 73017015 73017045 -28856124 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1314 208 42 11 chr13 73017045 73017166 -28856003 - AluJb SINE Alu -195 117 1 2635 167 21 2 chr13 73017166 73017634 -28855535 - L1PA16 LINE L1 -128 6038 5562 25 0 0 0 chr13 73017849 73017874 -28855295 + AT_rich Low_complexity Low_complexity 1 25 0 755 285 100 9 chr13 73017879 73018300 -28854869 + L1MC1 LINE L1 2372 2830 -3316 4786 238 35 34 chr13 73018312 73018583 -28854586 + L1MC1 LINE L1 3003 3272 -3061 2181 126 7 0 chr13 73018583 73018893 -28854276 + AluSx SINE Alu 1 312 0 4786 238 35 34 chr13 73018893 73021247 -28851922 + L1MC1 LINE L1 3272 6328 -5 236 319 164 10 chr13 73021355 73021562 -28851607 + MIR SINE MIR 12 250 -12 344 344 79 66 chr13 73022658 73023230 -28849939 - L2 LINE L2 -1458 1856 1278 517 97 0 0 chr13 73025378 73025450 -28847719 - L1 LINE L1 -2073 4073 4002 * 829 213 44 24 chr13 73025444 73025693 -28847476 + L1 LINE L1 4089 4342 -1804 345 218 17 149 chr13 73026896 73026953 -28846216 + LTR52 LTR ERVL 1 64 -357 5277 73 0 0 chr13 73026953 73027640 -28845529 - L1PA8 LINE L1 -15 6157 5471 345 218 17 149 chr13 73027640 73027756 -28845413 + LTR52 LTR ERVL 64 151 -270 413 341 114 28 chr13 73028133 73028520 -28844649 + L1M4 LINE L1 3403 3822 -2324 22 35 0 0 chr13 73028529 73028558 -28844611 + AT_rich Low_complexity Low_complexity 1 29 0 1971 130 7 3 chr13 73028605 73028905 -28844264 + AluSx SINE Alu 1 301 -11 295 243 12 87 chr13 73029067 73029240 -28843929 + L1M4 LINE L1 4383 4542 -1604 215 277 29 88 chr13 73029809 73029946 -28843223 + L2 LINE L2 3170 3298 -15 21 0 0 0 chr13 73030595 73030616 -28842553 + AT_rich Low_complexity Low_complexity 1 21 0 229 213 38 88 chr13 73031165 73031245 -28841924 + MIR SINE MIR 14 89 -173 256 250 0 0 chr13 73032250 73032302 -28840867 + L2 LINE L2 3258 3309 -4 29 84 0 0 chr13 73032518 73032589 -28840580 + AT_rich Low_complexity Low_complexity 1 71 0 2067 162 12 40 chr13 73032629 73032868 -28840301 + MLT1B LTR MaLR 1 226 -164 1915 140 49 3 chr13 73032868 73033196 -28839973 - MER61A LTR ERV1 0 343 1 2067 162 12 40 chr13 73033196 73033357 -28839812 + MLT1B LTR MaLR 226 390 0 229 231 44 88 chr13 73033529 73033620 -28839549 + L2 LINE L2 3179 3265 -7 1483 162 79 11 chr13 73034141 73034406 -28838763 + AluJb SINE Alu 1 287 -25 318 106 0 0 chr13 73034406 73034453 -28838716 + (TA)n Simple_repeat Simple_repeat 1 47 0 1483 162 79 11 chr13 73034453 73034465 -28838704 + AluJb SINE Alu 287 297 -15 1499 203 19 32 chr13 73035452 73035768 -28837401 - AluJb SINE Alu 0 312 1 497 273 80 69 chr13 73036062 73036337 -28836832 + LTR16A LTR ERVL 162 439 -11 710 12 0 0 chr13 73038284 73038370 -28834799 - L1PA4 LINE L1 0 6155 6070 22 0 0 0 chr13 73038636 73038658 -28834511 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 73039601 73039622 -28833547 + AT_rich Low_complexity Low_complexity 1 21 0 365 267 0 0 chr13 73040969 73041055 -28832114 - Charlie1 DNA MER1_type -24 2737 2652 1263 156 18 9 chr13 73041555 73041780 -28831389 + HERVH LTR ERV1 5593 5819 -1894 * 2229 106 50 13 chr13 73041778 73042156 -28831013 + HERVH LTR ERV1 7322 7713 0 2623 91 95 0 chr13 73042156 73042565 -28830604 + LTR7 LTR ERV1 1 448 -2 318 344 52 8 chr13 73042575 73042944 -28830225 + L1ME3A LINE L1 5323 5707 -463 285 300 83 57 chr13 73043009 73043359 -28829810 + L1ME3A LINE L1 5807 6165 -5 2181 117 0 0 chr13 73043361 73043661 -28829508 + AluSg SINE Alu 1 300 -10 22 0 0 0 chr13 73045457 73045479 -28827690 + AT_rich Low_complexity Low_complexity 1 22 0 44 20 0 0 chr13 73045683 73045734 -28827435 + AT_rich Low_complexity Low_complexity 1 51 0 466 298 68 34 chr13 73045769 73046034 -28827135 - HAL1 LINE L1 -745 1762 1489 222 91 0 0 chr13 73046187 73046220 -28826949 + (CATA)n Simple_repeat Simple_repeat 2 34 0 231 292 142 21 chr13 73046301 73046541 -28826628 + L1M4 LINE L1 4484 4752 -1394 998 213 34 142 chr13 73046558 73046967 -28826202 - MLT1A1 LTR MaLR 0 365 1 987 89 0 0 chr13 73047042 73047177 -28825992 + AluY SINE Alu 133 267 -44 33 0 0 0 chr13 73047177 73047210 -28825959 + AT_rich Low_complexity Low_complexity 1 33 0 3072 3 0 3 chr13 73047286 73047633 -28825536 + L1HS LINE L1 5671 6016 -139 21 57 0 0 chr13 73048270 73048305 -28824864 + AT_rich Low_complexity Low_complexity 1 35 0 2046 100 0 56 chr13 73048366 73048685 -28824484 + AluSc SINE Alu 1 301 -8 198 341 101 14 chr13 73051634 73051772 -28821397 - L3 LINE CR1 -10 1567 1418 291 161 129 0 chr13 73051942 73052004 -28821165 - MER116 DNA Mariner -5 75 6 243 200 0 0 chr13 73052017 73052057 -28821112 + Alu SINE Alu 128 167 -141 183 349 0 0 chr13 73052430 73052493 -28820676 + MIR3 SINE MIR 93 155 -53 931 18 0 0 chr13 73053676 73053786 -28819383 + L1PA2 LINE L1 6046 6155 0 2458 62 0 3 chr13 73053971 73054277 -28818892 + AluY SINE Alu 4 308 -3 746 266 102 22 chr13 73054407 73054681 -28818488 - MER46C DNA MER2_type -39 299 4 1031 148 0 0 chr13 73054982 73055137 -28818032 - AluSg/x SINE Alu -23 289 135 264 148 0 0 chr13 73055147 73055208 -28817961 + (TA)n Simple_repeat Simple_repeat 2 62 0 927 103 8 0 chr13 73055208 73055334 -28817835 - AluY SINE Alu -184 127 1 429 172 0 0 chr13 73056369 73056462 -28816707 + (TA)n Simple_repeat Simple_repeat 1 93 0 22 35 0 0 chr13 73056574 73056603 -28816566 + AT_rich Low_complexity Low_complexity 1 29 0 255 320 0 0 chr13 73057486 73057583 -28815586 - L1M4 LINE L1 -1329 4817 4721 746 228 33 5 chr13 73058642 73058826 -28814343 + MER5A DNA MER1_type 1 189 0 443 283 15 76 chr13 73059317 73059515 -28813654 - L2 LINE L2 -10 3303 3118 22 35 0 0 chr13 73059726 73059755 -28813414 + AT_rich Low_complexity Low_complexity 1 29 0 834 226 0 6 chr13 73060768 73060936 -28812233 + FAM SINE Alu 1 167 -8 255 79 0 0 chr13 73060985 73061023 -28812146 + (TG)n Simple_repeat Simple_repeat 1 38 0 2130 97 7 0 chr13 73061023 73061303 -28811866 - AluSp SINE Alu -28 285 1 29 60 0 0 chr13 73062069 73062119 -28811050 + AT_rich Low_complexity Low_complexity 1 50 0 387 207 19 19 chr13 73062346 73062502 -28810667 - L1MA4A LINE L1 -25 6278 6062 210 224 0 0 chr13 73062690 73062739 -28810430 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 210 143 0 0 chr13 73062936 73062971 -28810198 + (TTTTG)n Simple_repeat Simple_repeat 5 39 0 30 45 0 0 chr13 73063756 73063800 -28809369 + AT_rich Low_complexity Low_complexity 1 44 0 222 37 0 0 chr13 73064725 73064752 -28808417 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1696 127 3 60 chr13 73064752 73065066 -28808103 - AluSx SINE Alu -12 300 5 404 259 19 0 chr13 73065075 73065183 -28807986 + L1ME3A LINE L1 6052 6161 -9 1466 139 20 40 chr13 73065747 73066048 -28807121 + AluSx SINE Alu 3 297 -15 2161 92 7 0 chr13 73066049 73066330 -28806839 + AluSp SINE Alu 1 283 -30 187 29 86 0 chr13 73066333 73066368 -28806801 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 73066411 73066434 -28806735 + AT_rich Low_complexity Low_complexity 1 23 0 2562 55 0 3 chr13 73066776 73067084 -28806085 + AluY SINE Alu 1 307 -4 267 173 0 0 chr13 73067401 73067453 -28805716 + (TA)n Simple_repeat Simple_repeat 1 52 0 29 70 0 0 chr13 73067962 73068019 -28805150 + AT_rich Low_complexity Low_complexity 1 57 0 330 26 0 0 chr13 73068304 73068343 -28804826 + (TC)n Simple_repeat Simple_repeat 2 40 0 236 169 0 17 chr13 73068343 73068397 -28804772 - L1MC4 LINE L1 -1339 6703 6651 2325 110 0 0 chr13 73070268 73070578 -28802591 + AluSg SINE Alu 1 310 0 242 309 12 0 chr13 73071167 73071238 -28801931 + MLT1C LTR MaLR 147 218 -249 2275 234 21 13 chr13 73071238 73071712 -28801457 + MER70B LTR ERVL 1 478 -100 936 202 11 11 chr13 73071759 73071947 -28801222 + MLT1C LTR MaLR 280 467 0 184 349 23 78 chr13 73072242 73072371 -28800798 + L2 LINE L2 3182 3303 -10 2560 122 25 5 chr13 73072680 73073114 -28800055 - L1PA10 LINE L1 -16 6152 5710 308 339 16 16 chr13 73073391 73073512 -28799657 - MER5A DNA MER1_type -6 183 63 * 327 297 61 14 chr13 73073407 73073555 -28799614 + MER5A DNA MER1_type 32 186 -3 275 192 39 0 chr13 73073876 73073928 -28799241 + MLT1I LTR MaLR 288 341 -68 21 57 0 0 chr13 73074550 73074585 -28798584 + AT_rich Low_complexity Low_complexity 1 35 0 1528 51 5 0 chr13 73074602 73074798 -28798371 - L1PA8 LINE L1 -305 5867 5671 2163 75 0 20 chr13 73074798 73075104 -28798065 + L1PA8 LINE L1 5873 6172 0 21 0 0 0 chr13 73075805 73075826 -28797343 + AT_rich Low_complexity Low_complexity 1 21 0 4758 16 32 7 chr13 73076150 73076720 -28796449 - L1PA2 LINE L1 -1 6154 5571 1726 37 0 0 chr13 73076720 73076935 -28796234 + L1PA2 LINE L1 5352 5566 -589 705 12 0 0 chr13 73077192 73077278 -28795891 + L1PA2 LINE L1 6070 6155 0 1414 271 95 17 chr13 73077284 73078184 -28794985 + L1ME2 LINE L1 4902 5870 -294 272 270 40 53 chr13 73078475 73078627 -28794542 - MLT1L LTR MaLR -339 276 127 21 0 0 0 chr13 73078837 73078858 -28794311 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 73079611 73079651 -28793518 + AT_rich Low_complexity Low_complexity 1 40 0 315 0 0 0 chr13 73080051 73080086 -28793083 + (CA)n Simple_repeat Simple_repeat 2 36 0 1371 210 129 9 chr13 73080432 73080780 -28792389 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 73080904 73080926 -28792243 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr13 73081132 73081165 -28792004 + AT_rich Low_complexity Low_complexity 1 33 0 2223 227 30 8 chr13 73081440 73082358 -28790811 - L1M3 LINE L1 -490 5693 4753 1178 207 10 82 chr13 73082378 73082683 -28790486 + MLT1B LTR MaLR 108 390 0 21 0 0 0 chr13 73082716 73082737 -28790432 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 73082782 73082806 -28790363 + AT_rich Low_complexity Low_complexity 1 24 0 2464 214 83 5 chr13 73084002 73084614 -28788555 + MER52A LTR ERV1 239 955 -800 768 266 15 28 chr13 73084627 73085060 -28788109 - MSTD-int LTR MaLR -1191 544 2 1323 198 81 62 chr13 73085064 73085352 -28787817 - MSTD LTR MaLR -4 392 94 1998 145 0 25 chr13 73085352 73085669 -28787500 - AluSq SINE Alu -4 309 1 1323 198 81 62 chr13 73085669 73085749 -28787420 - MSTD LTR MaLR -302 94 17 570 313 40 36 chr13 73087875 73088329 -28784840 + L1MC4a LINE L1 5665 5808 -313 26 30 0 0 chr13 73088796 73088829 -28784340 + AT_rich Low_complexity Low_complexity 1 33 0 755 255 134 39 chr13 73089423 73089863 -28783306 + MLT1D LTR MaLR 1 467 0 265 292 58 58 chr13 73091572 73091709 -28781460 - L3b LINE CR1 -170 1413 1277 516 110 0 0 chr13 73091862 73091935 -28781234 - Alu SINE Alu -16 295 223 2187 92 0 0 chr13 73091945 73092216 -28780953 - AluSx SINE Alu -25 287 17 2333 51 3 45 chr13 73092442 73092753 -28780416 - AluY SINE Alu -13 298 1 1850 184 25 8 chr13 73094375 73094734 -28778435 - MLT1A1 LTR MaLR 0 365 1 438 232 107 18 chr13 73094881 73094993 -28778176 - L2 LINE L2 -1 3312 3191 1699 178 17 0 chr13 73095785 73096078 -28777091 + AluJb SINE Alu 2 299 -13 499 292 24 43 chr13 73097899 73098108 -28775061 + MIR SINE MIR 33 237 -25 785 193 25 0 chr13 73098521 73098682 -28774487 - L1PA16 LINE L1 -2 6164 6000 22 0 0 0 chr13 73098847 73098869 -28774300 + AT_rich Low_complexity Low_complexity 1 22 0 271 294 128 0 chr13 73099383 73099492 -28773677 + MLT1J2 LTR MaLR 42 164 -286 3551 212 44 10 chr13 73101888 73102804 -28770365 - L1MB7 LINE L1 -61 6123 5178 582 122 16 0 chr13 73102805 73102904 -28770265 + L1PA14 LINE L1 5847 5946 -206 963 192 34 26 chr13 73103011 73103245 -28769924 + L1PA14 LINE L1 5925 6160 -1 * 4691 261 36 48 chr13 73103240 73104928 -28768241 - L1MB7 LINE L1 -979 5167 3509 186 43 0 0 chr13 73104928 73104951 -28768218 + (TG)n Simple_repeat Simple_repeat 2 24 0 4691 261 36 48 chr13 73104951 73105427 -28767742 - L1MB7 LINE L1 -2637 3509 3029 1339 59 0 0 chr13 73105582 73105751 -28767418 - MLT2A1 LTR ERVL -275 169 1 5613 84 16 5 chr13 73105755 73106530 -28766639 - HERVL-A1 LTR ERVL -4 5650 4868 1276 276 67 20 chr13 73106549 73106955 -28766214 + MER74B LTR ERVL 124 548 -74 265 229 29 14 chr13 73106894 73106964 -28766205 - MER88 LTR ERVL -312 152 82 * 26 0 0 0 chr13 73107357 73107383 -28765786 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr13 73107584 73107615 -28765554 + AT_rich Low_complexity Low_complexity 1 31 0 1665 163 76 25 chr13 73107746 73108101 -28765068 + THE1C LTR MaLR 3 375 0 762 220 120 10 chr13 73108163 73108363 -28764806 + AluJo SINE Alu 84 305 -7 32 0 0 0 chr13 73108383 73108415 -28764754 + AT_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr13 73108573 73108625 -28764544 + AT_rich Low_complexity Low_complexity 1 52 0 337 270 26 9 chr13 73110995 73111110 -28762059 - L1MC3 LINE L1 -7 7778 7662 5998 239 55 41 chr13 73111170 73113042 -28760127 - L1MC3 LINE L1 -108 7677 5780 567 266 68 19 chr13 73114423 73114630 -28758539 - MER112 DNA MER1_type 0 260 44 301 241 18 0 chr13 73114640 73114752 -28758417 + (TA)n Simple_repeat Simple_repeat 2 115 0 242 236 36 0 chr13 73114849 73114904 -28758265 + L2 LINE L2 3216 3272 0 244 254 0 17 chr13 73114939 73114998 -28758171 - MER112 DNA MER1_type -195 65 8 1757 165 12 54 chr13 73115583 73115938 -28757231 - MLT2C1 LTR ERVL -35 429 18 403 264 100 0 chr13 73115948 73116088 -28757081 - MER119 DNA MER1_type -37 546 393 1953 97 0 0 chr13 73116196 73116454 -28756715 - AluSc SINE Alu -51 258 1 1628 165 88 23 chr13 73116454 73116805 -28756364 - Tigger2a DNA MER2_type -60 374 1 1239 286 69 18 chr13 73117035 73117482 -28755687 + MLT2B1 LTR ERVL 1 470 -50 238 217 0 0 chr13 73117520 73117566 -28755603 + L1MC4 LINE L1 6658 6703 -1339 * 253 231 22 44 chr13 73117538 73117629 -28755540 - L1MC4 LINE L1 -1339 6703 6615 320 191 12 0 chr13 73117635 73117719 -28755450 + (TA)n Simple_repeat Simple_repeat 1 85 0 270 157 10 0 chr13 73117719 73117774 -28755395 + MLT2D LTR ERVL 370 414 0 227 381 16 8 chr13 73119241 73119367 -28753802 - L2 LINE L2 -1178 2136 2010 865 288 77 6 chr13 73119680 73120006 -28753163 - L2 LINE L2 -1333 1981 1633 1875 246 0 2 chr13 73120007 73120442 -28752727 - L1P LINE L1 -1250 4896 4463 4708 175 17 2 chr13 73120532 73121419 -28751750 + L1PA16 LINE L1 5261 6160 -6 463 330 73 19 chr13 73121589 73121850 -28751319 - L2 LINE L2 -1676 1638 1364 306 0 0 0 chr13 73121855 73121889 -28751280 + (TG)n Simple_repeat Simple_repeat 1 34 0 945 173 6 11 chr13 73122326 73122505 -28750664 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr13 73122779 73122803 -28750366 + AT_rich Low_complexity Low_complexity 1 24 0 180 286 0 71 chr13 73124030 73124100 -28749069 - MIR SINE MIR -38 224 160 342 0 0 0 chr13 73124107 73124145 -28749024 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr13 73124147 73124188 -28748981 + AT_rich Low_complexity Low_complexity 1 41 0 7750 14 4 1 chr13 73124765 73126227 -28746942 + L1PA3 LINE L1 4691 6155 0 2883 98 16 35 chr13 73126227 73126713 -28746456 + L1MA5A LINE L1 5814 6296 -1 22 35 0 0 chr13 73126756 73126785 -28746384 + AT_rich Low_complexity Low_complexity 1 29 0 532 235 138 20 chr13 73127065 73127261 -28745908 + MER90 LTR ERV1 6 224 -351 812 124 0 0 chr13 73127261 73127374 -28745795 + AluSp SINE Alu 1 113 -200 1766 74 0 31 chr13 73127486 73127742 -28745427 - L1PA13 LINE L1 0 6163 5916 1698 224 0 16 chr13 73127964 73128335 -28744834 - MLT1A1 LTR MaLR 0 365 1 1682 191 10 0 chr13 73128849 73129158 -28744011 - AluJo SINE Alu 0 312 1 626 261 76 0 chr13 73129282 73129439 -28743730 - MIR SINE MIR -17 245 77 405 222 0 0 chr13 73129820 73129892 -28743277 - Tigger3(Golem) DNA MER2_type -2957 72 1 1340 210 31 7 chr13 73130198 73130488 -28742681 - AluJo SINE Alu -2 310 14 3814 166 48 4 chr13 73131403 73132137 -28741032 - Tigger3b DNA MER2_type -464 767 2 295 350 86 11 chr13 73132140 73132326 -28740843 - MLT2B1 LTR ERVL -40 480 281 560 218 21 21 chr13 73132391 73132533 -28740636 - MLT2D LTR ERVL -271 143 2 3276 267 96 26 chr13 73132534 73133669 -28739500 - HERVL-D LTR ERVL 0 5654 4441 8557 204 12 16 chr13 73133676 73133917 -28739252 - HERVL-D LTR ERVL -2174 3590 3350 1890 183 80 8 chr13 73133917 73134316 -28738853 - MSTA LTR MaLR 0 428 1 8557 204 12 16 chr13 73134316 73134442 -28738727 - HERVL-D LTR ERVL -2414 3350 3225 1768 170 24 42 chr13 73134442 73134824 -28738345 + THE1C LTR MaLR 1 375 0 8557 204 12 16 chr13 73134824 73136131 -28737038 - HERVL-D LTR ERVL -2539 3225 1920 805 258 0 6 chr13 73137759 73137937 -28735232 - MER45A DNA AcHobo 0 178 2 235 109 26 6 chr13 73138042 73138080 -28735089 - MSTA LTR MaLR 0 428 387 2213 98 3 0 chr13 73138080 73138375 -28734794 + AluSx SINE Alu 1 296 -16 28 29 0 0 chr13 73138481 73138516 -28734653 + AT_rich Low_complexity Low_complexity 1 35 0 975 266 36 30 chr13 73139345 73139841 -28733328 - L1M4 LINE L1 -1261 4885 4387 2270 259 80 77 chr13 73140269 73140780 -28732389 - L1M4 LINE L1 -1794 4352 3844 1844 153 0 25 chr13 73140780 73141100 -28732069 - AluSx SINE Alu 0 312 1 2270 259 80 77 chr13 73141100 73142062 -28731107 - L1M4 LINE L1 -2302 3844 2871 2247 67 37 7 chr13 73142062 73142181 -28730988 + AluY SINE Alu 3 117 -194 204 40 0 0 chr13 73142181 73142206 -28730963 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2247 67 37 7 chr13 73142206 73142384 -28730785 + AluY SINE Alu 117 309 -2 2270 259 80 77 chr13 73142384 73142536 -28730633 - L1M4 LINE L1 -3275 2871 2721 21 0 0 0 chr13 73142769 73142790 -28730379 + AT_rich Low_complexity Low_complexity 1 21 0 1495 171 32 29 chr13 73144022 73144303 -28728866 + AluJb SINE Alu 1 282 -30 471 63 0 0 chr13 73144306 73144369 -28728800 + (CA)n Simple_repeat Simple_repeat 2 64 0 258 338 0 0 chr13 73145768 73145848 -28727321 + AluSg/x SINE Alu 206 285 -17 2572 190 41 38 chr13 73145883 73146535 -28726634 + L1MA7 LINE L1 5630 6283 -8 547 256 61 18 chr13 73146704 73146868 -28726301 + MLT1C LTR MaLR 245 415 -52 34 72 0 0 chr13 73147371 73147440 -28725729 + AT_rich Low_complexity Low_complexity 1 69 0 781 267 0 5 chr13 73148301 73148488 -28724681 - AluJb SINE Alu -125 187 2 1506 225 108 50 chr13 73149239 73149741 -28723428 + MER34 LTR ERV1 11 541 -1 1646 178 3 13 chr13 73150467 73150770 -28722399 + L1PA16 LINE L1 5569 5868 -298 345 100 0 0 chr13 73151668 73151718 -28721451 - MADE1 DNA Mariner 0 80 31 322 115 0 58 chr13 73152265 73152317 -28720852 - MLT1J LTR MaLR -69 442 394 2870 181 20 3 chr13 73152714 73153301 -28719868 + L1MB4 LINE L1 5579 6175 -5 269 288 151 55 chr13 73154407 73154626 -28718543 - MIR SINE MIR -6 256 17 22 35 0 0 chr13 73154845 73154874 -28718295 + AT_rich Low_complexity Low_complexity 1 29 0 1154 81 38 0 chr13 73155730 73155890 -28717279 + L1MA1 LINE L1 5771 5936 -366 3684 69 0 0 chr13 73156107 73156570 -28716599 + L1PA7 LINE L1 5534 5996 -158 2104 102 7 0 chr13 73158291 73158585 -28714584 + AluSg SINE Alu 15 310 0 1836 142 22 0 chr13 73158716 73159016 -28714153 + AluSx SINE Alu 5 310 0 1133 210 108 32 chr13 73159868 73160239 -28712930 + MER69 DNA AcHobo 2083 2481 -45 22 0 0 0 chr13 73160353 73160375 -28712794 + AT_rich Low_complexity Low_complexity 1 22 0 1889 108 24 44 chr13 73161321 73161616 -28711553 - AluSx SINE Alu -17 295 7 237 132 19 19 chr13 73161684 73161737 -28711432 - L1MC5 LINE L1 -76 7885 7833 2247 92 0 13 chr13 73161763 73162069 -28711100 - AluSg SINE Alu -8 302 1 303 104 0 0 chr13 73162968 73163016 -28710153 + (GA)n Simple_repeat Simple_repeat 2 49 0 236 30 30 0 chr13 73163014 73163047 -28710122 + (GGA)n Simple_repeat Simple_repeat 3 36 0 * 252 0 0 0 chr13 73164172 73164200 -28708969 + (TA)n Simple_repeat Simple_repeat 2 29 0 191 372 96 0 chr13 73165182 73165276 -28707893 + L3 LINE CR1 1425 1527 -50 476 242 35 98 chr13 73166347 73166671 -28706498 + MLT1I LTR MaLR 95 538 -4 31 0 0 0 chr13 73167805 73167836 -28705333 + AT_rich Low_complexity Low_complexity 1 31 0 578 39 0 0 chr13 73168944 73169021 -28704148 + L1PB1 LINE L1 6074 6150 -1 598 300 48 22 chr13 73169938 73170168 -28703001 + MIR SINE MIR 20 252 -10 287 295 62 18 chr13 73170322 73170434 -28702735 - MIR SINE MIR -28 234 118 198 0 0 0 chr13 73171480 73171502 -28701667 + (TA)n Simple_repeat Simple_repeat 2 23 0 449 88 0 0 chr13 73172121 73172189 -28700980 - AluY SINE Alu -10 299 232 1071 69 0 21 chr13 73172189 73172333 -28700836 - AluY SINE Alu -170 141 1 1541 172 0 40 chr13 73172371 73172668 -28700501 - AluJb SINE Alu -14 298 14 691 228 82 0 chr13 73174838 73174996 -28698173 - MER58B DNA MER1_type -36 305 135 19255 196 18 15 chr13 73175689 73180629 -28692540 - L1 LINE L1 -2605 4960 14 210 179 0 0 chr13 73181292 73181348 -28691821 + T-rich Low_complexity Low_complexity 1 56 0 6121 34 0 0 chr13 73181349 73182078 -28691091 - L1PA3 LINE L1 -1 6154 5426 23 68 0 0 chr13 73182679 73182723 -28690446 + AT_rich Low_complexity Low_complexity 1 44 0 28 79 0 0 chr13 73182801 73182864 -28690305 + AT_rich Low_complexity Low_complexity 1 63 0 2004 155 0 0 chr13 73183071 73183381 -28689788 + AluSq SINE Alu 1 310 -3 1273 271 70 28 chr13 73184304 73184761 -28688408 - MLT1D LTR MaLR -29 476 1 1777 190 87 48 chr13 73185166 73185582 -28687587 + MSTB1 LTR MaLR 1 432 0 44 0 0 48 chr13 73185600 73185663 -28687506 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr13 73185758 73185780 -28687389 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 73185989 73186012 -28687157 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 73186964 73186989 -28686180 + (T)n Simple_repeat Simple_repeat 1 25 0 1033 252 24 17 chr13 73187002 73187292 -28685877 + LTR52 LTR ERVL 44 335 -86 2162 189 69 2 chr13 73187663 73188098 -28685071 + Tigger1 DNA MER2_type 1 464 -1954 2394 146 3 0 chr13 73188098 73188461 -28684708 - THE1B LTR MaLR 0 364 1 * 11056 148 31 14 chr13 73188461 73190384 -28682785 + Tigger1 DNA MER2_type 462 2418 0 24 53 0 0 chr13 73190957 73190995 -28682174 + AT_rich Low_complexity Low_complexity 1 38 0 1572 199 3 3 chr13 73191179 73191500 -28681669 - AluJb SINE Alu 0 321 1 189 0 0 0 chr13 73191509 73191530 -28681639 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 357 24 0 0 chr13 73191542 73191584 -28681585 + (TG)n Simple_repeat Simple_repeat 1 42 0 955 206 44 26 chr13 73191598 73191826 -28681343 - L1PA16 LINE L1 -13 6153 5922 * 956 180 0 0 chr13 73191820 73192003 -28681166 + L1 LINE L1 3655 3837 -2309 21 0 0 0 chr13 73192059 73192080 -28681089 + AT_rich Low_complexity Low_complexity 1 21 0 2121 101 24 0 chr13 73192425 73192721 -28680448 + AluSp SINE Alu 1 303 -10 28 0 0 0 chr13 73192772 73192800 -28680369 + AT_rich Low_complexity Low_complexity 1 28 0 459 257 31 86 chr13 73243203 73243425 -28629744 + LTR40b LTR ERVL 1 210 -252 * 483 171 0 0 chr13 73243413 73243495 -28629674 + LTR40a LTR ERVL 438 519 0 547 308 60 23 chr13 73243503 73243935 -28629234 + L1ME3A LINE L1 4544 4991 -1155 668 291 81 31 chr13 73244097 73244516 -28628653 + L1ME3A LINE L1 5461 5900 -270 565 319 99 23 chr13 73244621 73245226 -28627943 - L1M4 LINE L1 -2005 4141 3491 22 35 0 0 chr13 73245335 73245364 -28627805 + AT_rich Low_complexity Low_complexity 1 29 0 288 198 0 37 chr13 73245854 73245935 -28627234 - L1M4 LINE L1 -3201 2945 2868 37 93 0 0 chr13 73246203 73246310 -28626859 + AT_rich Low_complexity Low_complexity 1 107 0 219 36 0 0 chr13 73246467 73246495 -28626674 + (T)n Simple_repeat Simple_repeat 1 28 0 2329 65 0 31 chr13 73246535 73246856 -28626313 - AluY SINE Alu 0 311 1 422 275 70 47 chr13 73247027 73247198 -28625971 + L1M4 LINE L1 609 783 -5759 2528 185 72 2 chr13 73247450 73248087 -28625082 + L1PB4 LINE L1 5107 5788 -368 582 191 0 0 chr13 73248235 73248350 -28624819 + L1PB4 LINE L1 6042 6156 0 2392 252 56 50 chr13 73248350 73249382 -28623787 + L1M4 LINE L1 1120 2157 -4489 7159 39 1 2 chr13 73249388 73250296 -28622873 - L1PA4 LINE L1 -2792 3354 2448 755 41 0 0 chr13 73250293 73250390 -28622779 + L1PA4 LINE L1 3328 3424 -2722 * 13107 37 5 0 chr13 73250423 73252809 -28620360 + L1PA4 LINE L1 3755 6155 0 1148 229 62 62 chr13 73252813 73253931 -28619238 + L1M4 LINE L1 2268 3606 -3038 1815 186 58 32 chr13 73253967 73254434 -28618735 + L1MA9 LINE L1 5837 6310 -2 1621 108 0 5 chr13 73254532 73254755 -28618414 + AluSq SINE Alu 1 222 -91 30 27 0 0 chr13 73255237 73255274 -28617895 + AT_rich Low_complexity Low_complexity 1 37 0 4153 149 33 4 chr13 73257684 73258651 -28614518 - L1MA1 LINE L1 -337 5965 4972 1262 160 22 48 chr13 73258654 73258922 -28614247 - L1MA1 LINE L1 -1852 4294 4034 2653 10 0 0 chr13 73258955 73259249 -28613920 - AluYa5 SINE Alu -17 294 1 371 291 101 12 chr13 73259391 73259638 -28613531 + L1MC4 LINE L1 7093 7361 -681 33 56 0 0 chr13 73259959 73260013 -28613156 + AT_rich Low_complexity Low_complexity 1 54 0 26 0 0 0 chr13 73260151 73260177 -28612992 + AT_rich Low_complexity Low_complexity 1 26 0 599 232 46 0 chr13 73260420 73260571 -28612598 - L1ME2 LINE L1 -328 6254 6097 25 0 0 0 chr13 73261566 73261591 -28611578 + AT_rich Low_complexity Low_complexity 1 25 0 621 313 70 31 chr13 73262063 73262365 -28610804 + L2 LINE L2 2459 2781 -533 2120 128 0 13 chr13 73262365 73262648 -28610521 + AluSx SINE Alu 1 281 -31 270 0 0 0 chr13 73262648 73262678 -28610491 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2120 128 0 13 chr13 73262678 73262707 -28610462 + AluSx SINE Alu 281 309 -3 621 313 70 31 chr13 73262707 73262787 -28610382 + L2 LINE L2 2781 2856 -458 6285 90 18 0 chr13 73262912 73263811 -28609358 - L1PA7 LINE L1 -1491 4655 3741 6822 70 1 8 chr13 73263811 73265330 -28607839 + L1PA7 LINE L1 4642 6154 0 21 36 0 0 chr13 73265931 73265959 -28607210 + AT_rich Low_complexity Low_complexity 1 28 0 1699 87 62 11 chr13 73265965 73266241 -28606928 - AluY SINE Alu -21 290 1 24 32 0 0 chr13 73266515 73266546 -28606623 + AT_rich Low_complexity Low_complexity 1 31 0 285 309 61 46 chr13 73266882 73267144 -28606025 - L1ME2 LINE L1 -2084 6142 5877 252 203 38 0 chr13 73267344 73267423 -28605746 - L1ME2 LINE L1 -914 5650 5569 409 293 70 57 chr13 73267607 73267836 -28605333 + MLT2F LTR ERVL 194 425 -238 1557 258 112 36 chr13 73268662 73269245 -28603924 - L1ME2 LINE L1 -4541 2023 1355 3009 186 38 0 chr13 73269245 73269880 -28603289 - L1MA6 LINE L1 0 6300 5642 1557 258 112 36 chr13 73269880 73270146 -28603023 - L1ME2 LINE L1 -5209 1355 1110 728 303 38 7 chr13 73270151 73270438 -28602731 - L1ME2 LINE L1 -5551 494 199 287 358 8 0 chr13 73270527 73270650 -28602519 - L1ME2 LINE L1 -5830 215 92 2007 286 82 10 chr13 73270769 73271904 -28601265 + L1M4 LINE L1 2118 3334 -2812 1947 277 89 42 chr13 73271918 73274158 -28599011 + L1M4 LINE L1 945 3398 -3246 292 292 52 99 chr13 73274370 73274603 -28598566 + L1M4 LINE L1 43 264 -6278 2200 94 7 0 chr13 73274798 73275096 -28598073 + AluSp SINE Alu 1 300 -13 324 298 105 0 chr13 73275205 73275319 -28597850 + L1M4 LINE L1 800 925 -5721 907 220 134 31 chr13 73275449 73275764 -28597405 + L1M4 LINE L1 850 1131 -5411 1631 210 14 11 chr13 73275764 73276111 -28597058 - MER7A DNA MER2_type 0 346 1 907 220 134 31 chr13 73276111 73276308 -28596861 + L1M4 LINE L1 1131 1415 -5127 1167 236 113 25 chr13 73276331 73277228 -28595941 + L1M4 LINE L1 2174 3142 -3502 208 64 85 0 chr13 73277237 73277284 -28595885 + (TA)n Simple_repeat Simple_repeat 2 52 0 1497 138 0 5 chr13 73277480 73277697 -28595472 - AluSx SINE Alu -96 216 1 2180 104 0 23 chr13 73277785 73278094 -28595075 - AluY SINE Alu -9 302 1 985 314 75 37 chr13 73278344 73278905 -28594264 - L2 LINE L2 -347 2967 2386 1567 127 4 0 chr13 73278946 73279182 -28593987 + MLT2A2 LTR ERVL 5 241 -212 953 175 30 25 chr13 73279481 73279681 -28593488 + L1PA16 LINE L1 5966 6166 0 994 72 0 5 chr13 73280025 73280168 -28593001 + L1ME LINE L1 5649 5790 -372 379 214 15 0 chr13 73280174 73280305 -28592864 + (TA)n Simple_repeat Simple_repeat 1 133 0 258 105 0 0 chr13 73280922 73280960 -28592209 + (TC)n Simple_repeat Simple_repeat 1 38 0 1195 232 66 102 chr13 73281413 73281697 -28591472 - MLT1D LTR MaLR 0 505 245 261 0 0 0 chr13 73281697 73281726 -28591443 + (CA)n Simple_repeat Simple_repeat 1 29 0 1195 232 66 102 chr13 73281726 73281953 -28591216 - MLT1D LTR MaLR -260 245 12 317 345 25 0 chr13 73281992 73282111 -28591058 + MIR SINE MIR 5 126 -136 837 204 42 111 chr13 73282343 73282720 -28590449 - HAL1 LINE L1 0 2507 2157 24 0 0 0 chr13 73282994 73283018 -28590151 + AT_rich Low_complexity Low_complexity 1 24 0 44 46 0 0 chr13 73283143 73283208 -28589961 + AT_rich Low_complexity Low_complexity 1 65 0 258 169 0 0 chr13 73284940 73285005 -28588164 + (CA)n Simple_repeat Simple_repeat 1 65 0 487 277 50 0 chr13 73285304 73285445 -28587724 - L1MA10 LINE L1 -14 6320 6173 402 225 0 12 chr13 73285716 73285795 -28587374 + Tigger5 DNA MER2_type 1 78 -2245 497 165 0 0 chr13 73285795 73285874 -28587295 - Tigger5 DNA MER2_type -3 2320 2242 389 244 22 0 chr13 73285856 73285946 -28587223 + Tigger5 DNA MER2_type 2232 2323 0 * 26 50 0 0 chr13 73285946 73285986 -28587183 + AT_rich Low_complexity Low_complexity 1 40 0 310 258 52 100 chr13 73286541 73286788 -28586381 - MLT1J LTR MaLR -235 276 3 1815 191 21 3 chr13 73287076 73287401 -28585768 + MLT1A1 LTR MaLR 1 331 -34 1461 173 0 4 chr13 73287435 73287689 -28585480 + AluJb SINE Alu 3 255 -57 236 186 0 29 chr13 73287713 73287783 -28585386 - MER115 DNA AcHobo -75 618 551 404 414 11 30 chr13 73287990 73288256 -28584913 - MER115 DNA AcHobo -432 261 1 813 31 0 0 chr13 73288316 73288414 -28584755 + L1PA5 LINE L1 6053 6150 -4 239 241 0 19 chr13 73289278 73289332 -28583837 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr13 73289596 73289618 -28583551 + AT_rich Low_complexity Low_complexity 1 22 0 204 281 27 116 chr13 73289899 73290045 -28583124 - L2 LINE L2 -23 3290 3158 320 359 89 30 chr13 73290467 73290592 -28582577 - L2 LINE L2 -2269 1045 929 543 262 85 38 chr13 73290592 73290909 -28582260 - MER46C DNA MER2_type -2 336 5 320 359 89 30 chr13 73290909 73291243 -28581926 - L2 LINE L2 -2385 929 559 22 70 0 0 chr13 73291904 73291947 -28581222 + AT_rich Low_complexity Low_complexity 1 43 0 3528 189 64 17 chr13 73292012 73292973 -28580196 + L1MB4 LINE L1 5176 6180 0 2931 214 47 3 chr13 73293671 73294354 -28578815 + L1MC3 LINE L1 7073 7785 0 221 191 24 119 chr13 73294388 73294472 -28578697 - MER5A DNA MER1_type -91 98 23 539 279 44 10 chr13 73294480 73294658 -28578511 + MER5A DNA MER1_type 2 169 -9 2618 204 89 11 chr13 73295111 73295875 -28577294 + L1MA8 LINE L1 2964 3787 -2359 5965 184 30 23 chr13 73295883 73297950 -28575219 + L1MA8 LINE L1 3973 6051 -240 530 352 59 17 chr13 73297998 73298404 -28574765 - MLT1J LTR MaLR -8 503 81 488 252 61 0 chr13 73300817 73300948 -28572221 + HERVL40 LTR ERVL 5392 5530 0 1001 261 107 42 chr13 73300952 73301430 -28571739 + LTR40a LTR ERVL 5 513 -6 637 239 133 6 chr13 73303511 73303691 -28569478 + MER58A DNA MER1_type 2 204 -20 183 42 0 0 chr13 73303692 73303716 -28569453 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 1121 185 31 4 chr13 73304009 73304268 -28568901 + L1MA8 LINE L1 6024 6289 -2 2685 26 0 3 chr13 73304271 73304583 -28568586 + AluY SINE Alu 1 311 0 462 331 78 8 chr13 73308054 73308299 -28564870 + MIR SINE MIR 1 262 0 872 118 0 14 chr13 73308854 73308869 -28564300 + L1PA8A LINE L1 5332 5346 -785 4040 78 2 0 chr13 73308869 73309410 -28563759 - L1PA7 LINE L1 0 6154 5613 872 118 0 14 chr13 73309410 73309559 -28563610 + L1PA8A LINE L1 5346 5489 -642 181 57 57 0 chr13 73309728 73309763 -28563406 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 340 158 16 74 chr13 73310196 73310386 -28562783 + (TA)n Simple_repeat Simple_repeat 2 180 0 220 190 35 0 chr13 73310396 73310454 -28562715 + (TATAA)n Simple_repeat Simple_repeat 4 63 0 4961 168 31 23 chr13 73311573 73312688 -28560481 + L1MA8 LINE L1 5165 6288 -3 1772 142 54 3 chr13 73314312 73314628 -28558541 - L1PA16 LINE L1 -9 6157 5826 22 0 0 0 chr13 73314659 73314681 -28558488 + AT_rich Low_complexity Low_complexity 1 22 0 2071 214 18 20 chr13 73315592 73316091 -28557078 + L1PA16 LINE L1 5649 6146 -20 349 248 62 25 chr13 73316094 73316255 -28556914 - L1MC5 LINE L1 -192 7769 7603 229 301 24 0 chr13 73316337 73316420 -28556749 - L1MC4 LINE L1 -1344 6698 6614 * 235 256 13 0 chr13 73316404 73316482 -28556687 + L1MC4 LINE L1 6640 6718 -1324 286 258 22 0 chr13 73316529 73316618 -28556551 - L1MC5 LINE L1 -544 7417 7327 321 315 93 0 chr13 73316706 73316814 -28556355 - MIR3 SINE MIR -51 157 40 195 336 45 73 chr13 73316871 73316981 -28556188 + MIR3 SINE MIR 15 121 -87 180 273 0 0 chr13 73318906 73318950 -28554219 + L2 LINE L2 3016 3059 -213 2417 52 0 23 chr13 73319170 73319479 -28553690 - AluY SINE Alu -9 302 1 39 60 0 0 chr13 73319777 73319844 -28553325 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr13 73320551 73320572 -28552597 + AT_rich Low_complexity Low_complexity 1 21 0 2558 115 0 0 chr13 73320777 73321141 -28552028 + THE1B LTR MaLR 1 364 0 1338 233 89 27 chr13 73321270 73321639 -28551530 + MSTD LTR MaLR 1 392 -4 265 86 0 0 chr13 73321953 73321988 -28551181 + MSTD LTR MaLR 1 35 -361 259 305 50 101 chr13 73322217 73322574 -28550595 + L2 LINE L2 2975 3313 0 343 291 35 0 chr13 73322642 73322728 -28550441 + MIR SINE MIR 80 168 -94 460 322 50 15 chr13 73322820 73323019 -28550150 + MIR SINE MIR 1 206 -56 28 61 0 0 chr13 73323019 73323068 -28550101 + AT_rich Low_complexity Low_complexity 1 49 0 2293 107 0 0 chr13 73323208 73323518 -28549651 + AluSg SINE Alu 1 310 0 1528 223 14 19 chr13 73323607 73323971 -28549198 - MLT1A1 LTR MaLR -2 363 2 428 285 41 81 chr13 73325793 73326014 -28547155 - MIR SINE MIR -42 220 9 1074 188 19 38 chr13 73326054 73326320 -28546849 + MER33 DNA MER1_type 1 261 -63 32 43 0 0 chr13 73326504 73326550 -28546619 + AT_rich Low_complexity Low_complexity 1 46 0 597 307 42 37 chr13 73326689 73326904 -28546265 - MIR SINE MIR -14 248 33 218 333 108 0 chr13 73326967 73327069 -28546100 + MIR3 SINE MIR 53 165 -43 414 0 0 0 chr13 73327073 73327119 -28546050 + (TA)n Simple_repeat Simple_repeat 2 47 0 204 40 0 0 chr13 73327648 73327673 -28545496 + (GA)n Simple_repeat Simple_repeat 2 26 0 211 109 65 0 chr13 73328706 73328752 -28544417 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr13 73328762 73328791 -28544378 + AT_rich Low_complexity Low_complexity 1 29 0 226 157 14 57 chr13 73328795 73328865 -28544304 + L1MC4 LINE L1 6643 6709 -1333 1493 218 39 0 chr13 73330327 73330634 -28542535 + MER2 DNA MER2_type 2 320 -25 44 96 0 0 chr13 73331506 73331641 -28541528 + AT_rich Low_complexity Low_complexity 1 135 0 6209 183 30 9 chr13 73331760 73333989 -28539180 - L1PA15 LINE L1 -2 6163 3883 1630 254 24 2 chr13 73333998 73334458 -28538711 + L1P LINE L1 2853 3322 -2824 455 191 0 11 chr13 73334448 73334537 -28538632 + L1P LINE L1 3620 3707 -2439 * 4024 31 0 0 chr13 73335677 73336189 -28536980 + L1PA3 LINE L1 5677 6188 0 36 77 0 0 chr13 73336354 73336432 -28536737 + AT_rich Low_complexity Low_complexity 1 78 0 27 73 0 0 chr13 73336603 73336658 -28536511 + AT_rich Low_complexity Low_complexity 1 55 0 273 169 0 0 chr13 73336738 73336797 -28536372 + GA-rich Low_complexity Low_complexity 3 61 0 365 291 137 33 chr13 73338056 73338238 -28534931 + MIR SINE MIR 57 257 -5 309 210 37 0 chr13 73338603 73338684 -28534485 - L1M4 LINE L1 -1316 4830 4747 295 310 92 16 chr13 73338987 73339171 -28533998 - L2 LINE L2 -8 3305 3108 728 187 0 0 chr13 73339175 73339298 -28533871 + FLAM_C SINE Alu 7 129 -14 205 216 0 0 chr13 73339298 73339335 -28533834 + (TA)n Simple_repeat Simple_repeat 2 38 0 248 214 0 82 chr13 73339335 73339433 -28533736 + L1MC4 LINE L1 6614 6703 -1339 * 273 300 0 0 chr13 73339345 73339435 -28533734 - L1MC4 LINE L1 -1339 6703 6614 312 296 23 0 chr13 73339441 73339529 -28533640 - L1MC4 LINE L1 -1339 6703 6614 304 333 0 0 chr13 73339473 73339563 -28533606 + L1MC4 LINE L1 6614 6703 -1339 * 204 179 0 0 chr13 73339564 73339603 -28533566 + (TA)n Simple_repeat Simple_repeat 2 40 0 253 289 0 0 chr13 73339603 73339693 -28533476 + L1MC4 LINE L1 6614 6703 -1339 345 300 0 0 chr13 73339711 73339801 -28533368 + L1MC4 LINE L1 6614 6703 -1339 335 311 0 0 chr13 73339749 73339839 -28533330 - L1MC4 LINE L1 -1339 6703 6614 * 300 307 23 0 chr13 73339807 73339895 -28533274 + L1MC4 LINE L1 6614 6703 -1339 * 300 294 0 22 chr13 73339843 73339935 -28533234 - L1MC4 LINE L1 -1339 6703 6614 263 181 0 64 chr13 73339938 73340032 -28533137 + L1MC4 LINE L1 6615 6702 -1340 811 195 18 18 chr13 73340057 73340221 -28532948 + AluSc SINE Alu 123 286 -23 700 289 135 51 chr13 73340538 73341005 -28532164 - MLT1G1 LTR MaLR -15 580 75 2044 89 7 0 chr13 73341407 73341677 -28531492 + AluSg SINE Alu 1 272 -38 198 0 0 0 chr13 73341692 73341714 -28531455 + (TC)n Simple_repeat Simple_repeat 2 23 0 405 136 0 0 chr13 73341714 73341780 -28531389 + (TA)n Simple_repeat Simple_repeat 2 67 0 312 91 0 0 chr13 73341815 73341859 -28531310 + (TG)n Simple_repeat Simple_repeat 1 44 0 918 225 145 31 chr13 73342361 73342650 -28530519 - MLT1G1 LTR MaLR -273 322 1 243 244 22 22 chr13 73342728 73342818 -28530351 - L1MC4 LINE L1 -1339 6703 6614 * 281 239 0 22 chr13 73342740 73342832 -28530337 + L1MC4 LINE L1 6614 6703 -1339 244 190 63 13 chr13 73342817 73342896 -28530273 - L1MCa LINE L1 -4362 2064 1982 * 358 300 45 55 chr13 73343067 73343267 -28529902 - MLT1J LTR MaLR -313 198 1 341 340 44 19 chr13 73343267 73343426 -28529743 - L2 LINE L2 -588 2726 2564 302 360 50 21 chr13 73343430 73343669 -28529500 - L2 LINE L2 -855 2459 2214 31 26 0 0 chr13 73344109 73344147 -28529022 + AT_rich Low_complexity Low_complexity 1 38 0 200 372 0 12 chr13 73344879 73344965 -28528204 - MIR SINE MIR -104 104 20 24 32 0 0 chr13 73346299 73346330 -28526839 + AT_rich Low_complexity Low_complexity 1 31 0 364 282 10 0 chr13 73347062 73347165 -28526004 + L1ME LINE L1 5562 5665 -456 309 118 0 0 chr13 73347168 73347219 -28525950 + (CA)n Simple_repeat Simple_repeat 2 52 0 24 67 0 0 chr13 73347227 73347272 -28525897 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr13 73347592 73347631 -28525538 + AT_rich Low_complexity Low_complexity 1 39 0 310 306 54 54 chr13 73347775 73348089 -28525080 - L1MC4 LINE L1 -157 7885 7572 1262 208 0 0 chr13 73348585 73348806 -28524363 - MER92B LTR ERV1 -415 221 1 279 93 0 0 chr13 73349092 73349135 -28524034 + (CAA)n Simple_repeat Simple_repeat 2 44 0 1524 193 0 52 chr13 73349646 73349972 -28523197 - AluJb SINE Alu -1 311 3 26 30 0 0 chr13 73351674 73351707 -28521462 + AT_rich Low_complexity Low_complexity 1 33 0 971 187 19 19 chr13 73353128 73353342 -28519827 - L1MA6 LINE L1 -4 6296 6083 234 248 119 91 chr13 73354164 73354374 -28518795 - MIR SINE MIR -1 261 46 1089 205 47 95 chr13 73354730 73355034 -28518135 + Charlie1 DNA MER1_type 2351 2668 -93 225 0 0 0 chr13 73355034 73355059 -28518110 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2038 82 0 45 chr13 73355061 73355352 -28517817 - AluY SINE Alu -33 278 1 1089 205 47 95 chr13 73355352 73355474 -28517695 + Charlie1 DNA MER1_type 2669 2759 -2 184 361 0 28 chr13 73355654 73355726 -28517443 - MIR SINE MIR -95 113 44 1824 170 131 16 chr13 73356122 73356504 -28516665 - MSTA LTR MaLR -2 426 1 244 58 19 77 chr13 73358142 73358173 -28514996 + (GAAAA)n Simple_repeat Simple_repeat 2 30 -20 2288 99 0 10 chr13 73358173 73358487 -28514682 + AluSx SINE Alu 1 311 -1 244 58 19 77 chr13 73358487 73358507 -28514662 + (GAAAA)n Simple_repeat Simple_repeat 30 50 0 284 298 107 60 chr13 73359066 73359318 -28513851 - MLT1J LTR MaLR -239 272 9 249 348 11 65 chr13 73359826 73360010 -28513159 - L2 LINE L2 -1 3312 3139 500 311 91 38 chr13 73360462 73360933 -28512236 - L2 LINE L2 -192 3121 2625 8932 103 17 9 chr13 73360977 73363112 -28510057 - L1PA8 LINE L1 -14 6158 4013 2786 138 21 0 chr13 73363113 73363592 -28509577 + L1P LINE L1 2689 3177 -2969 375 119 0 0 chr13 73363592 73363659 -28509510 + (TG)n Simple_repeat Simple_repeat 2 68 0 500 208 0 0 chr13 73363659 73363755 -28509414 - AluSg/x SINE Alu -27 282 187 447 253 247 10 chr13 73363755 73363949 -28509220 - L2 LINE L2 -681 2633 2394 195 69 0 0 chr13 73364153 73364182 -28508987 + (TA)n Simple_repeat Simple_repeat 2 30 0 308 83 21 0 chr13 73364182 73364230 -28508939 + (CA)n Simple_repeat Simple_repeat 2 50 0 348 349 76 22 chr13 73364485 73364801 -28508368 + L1ME LINE L1 5258 5593 -569 303 277 47 46 chr13 73365088 73365309 -28507860 - L1MEc LINE L1 -4451 2089 1862 1569 268 48 24 chr13 73365708 73366163 -28507006 + MLT1D LTR MaLR 3 468 -37 247 246 0 0 chr13 73366326 73366383 -28506786 - L1MC4 LINE L1 -1334 6708 6652 232 245 0 0 chr13 73366534 73366583 -28506586 + (TG)n Simple_repeat Simple_repeat 2 50 0 1832 178 56 42 chr13 73366586 73367012 -28506157 + Tigger2a DNA MER2_type 3 434 0 654 228 6 31 chr13 73367054 73367216 -28505953 - MLT2C2 LTR ERVL -167 297 140 1227 230 22 36 chr13 73367267 73367629 -28505540 - L1MA8 LINE L1 -12 6156 5929 395 141 0 0 chr13 73367630 73367694 -28505475 - MLT2A2 LTR ERVL -2 451 388 323 88 44 44 chr13 73367695 73367809 -28505360 + (TA)n Simple_repeat Simple_repeat 1 114 0 189 163 22 43 chr13 73367940 73368032 -28505137 + (CATATA)n Simple_repeat Simple_repeat 2 91 0 426 155 33 39 chr13 73368046 73368227 -28504942 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 282 176 0 0 chr13 73368246 73368297 -28504872 + MLT2A2 LTR ERVL 77 127 -326 2933 174 20 29 chr13 73368307 73369401 -28503768 - L1MA8 LINE L1 -511 5789 4715 704 176 15 0 chr13 73369410 73369546 -28503623 - MLT2C1 LTR ERVL -259 138 1 4399 198 49 70 chr13 73369546 73370142 -28503027 - ERVL-C1 LTR ERVL -8 5756 5149 1530 198 10 30 chr13 73370142 73370445 -28502724 - AluJo SINE Alu -13 299 3 4399 198 49 70 chr13 73370445 73370457 -28502712 - ERVL-C1 LTR ERVL -615 5149 5138 2211 83 10 0 chr13 73370457 73370747 -28502422 - AluY SINE Alu -18 293 1 4399 198 49 70 chr13 73370747 73371345 -28501824 - ERVL-C1 LTR ERVL -626 5138 4574 2322 67 0 61 chr13 73371446 73371775 -28501394 - AluY SINE Alu -2 309 1 262 111 0 0 chr13 73371842 73371878 -28501291 + Alu SINE Alu 13 48 -252 5437 171 55 12 chr13 73371935 73373038 -28500131 - Tigger3b DNA MER2_type -1 1230 80 23 54 0 0 chr13 73373184 73373221 -28499948 + AT_rich Low_complexity Low_complexity 1 37 0 2029 118 0 13 chr13 73373489 73373795 -28499374 - AluSg SINE Alu -8 302 1 29 70 0 0 chr13 73374049 73374106 -28499063 + AT_rich Low_complexity Low_complexity 1 57 0 4720 139 22 22 chr13 73374114 73375485 -28497684 - L1MA1 LINE L1 -15 6285 4861 4291 194 25 13 chr13 73375482 73376333 -28496836 - L1M1 LINE L1 -6686 879 19 * 764 316 38 33 chr13 73376702 73377069 -28496100 - L2 LINE L2 -786 2528 2160 180 231 19 39 chr13 73377309 73377361 -28495808 + L2 LINE L2 652 702 -2612 342 294 142 3 chr13 73377924 73378196 -28494973 - L1MC/D LINE L1 -604 5558 5355 282 29 0 0 chr13 73378400 73378435 -28494734 + (TG)n Simple_repeat Simple_repeat 2 36 0 6977 62 11 4 chr13 73378892 73380639 -28492530 - L1PA7 LINE L1 -4 6150 4397 289 305 40 62 chr13 73380701 73380878 -28492291 + MIR SINE MIR 8 180 -82 1155 290 92 55 chr13 73381049 73381853 -28491316 - L1ME3A LINE L1 0 6170 5337 362 268 65 26 chr13 73381950 73382103 -28491066 - L1ME3A LINE L1 -1592 4554 4396 23 33 0 0 chr13 73382124 73382154 -28491015 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 73383967 73383996 -28489173 + AT_rich Low_complexity Low_complexity 1 29 0 766 170 28 6 chr13 73384902 73385224 -28487945 + GA-rich Low_complexity Low_complexity 1 329 0 320 192 90 0 chr13 73385587 73385665 -28487504 + L1MB8 LINE L1 5592 5676 -490 1253 253 42 25 chr13 73385871 73386279 -28486890 + L1MB8 LINE L1 5758 6172 -6 383 301 28 34 chr13 73387209 73387385 -28485784 + MER5B DNA MER1_type 3 177 -1 460 243 256 27 chr13 73388845 73389114 -28484055 - MLT1G3 LTR MaLR -297 293 1 1298 238 37 37 chr13 73389461 73389835 -28483334 - MLT1A2 LTR MaLR 0 374 1 731 316 60 39 chr13 73390118 73390549 -28482620 - L3 LINE CR1 -173 1404 965 444 267 82 22 chr13 73391062 73391197 -28481972 + MIR SINE MIR 17 159 -103 187 301 226 23 chr13 73391551 73391684 -28481485 + MER5A DNA MER1_type 30 189 0 24 19 8 0 chr13 73392614 73392686 -28480483 + AT_rich Low_complexity Low_complexity 1 31 0 184 324 28 0 chr13 73392686 73392757 -28480412 - MIR SINE MIR -84 178 106 1870 292 98 39 chr13 73393203 73394434 -28478735 - HAL1 LINE L1 -617 1890 587 864 289 147 39 chr13 73396527 73397214 -28475955 - L2 LINE L2 -12 3301 2570 1634 160 29 104 chr13 73397215 73397590 -28475579 - MER7A DNA MER2_type -1 345 1 264 59 0 0 chr13 73398241 73398275 -28474894 + (T)n Simple_repeat Simple_repeat 1 34 0 2561 42 0 3 chr13 73399110 73399417 -28473752 + AluY SINE Alu 1 306 -5 3815 269 70 28 chr13 73400058 73401720 -28471449 - L1 LINE L1 -3579 2391 801 186 43 0 0 chr13 73401720 73401743 -28471426 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1306 204 0 72 chr13 73401745 73402049 -28471120 - AluSx SINE Alu -30 282 1 3815 269 70 28 chr13 73402049 73403225 -28469944 - L1 LINE L1 -5169 801 34 1246 283 43 0 chr13 73403485 73403835 -28469334 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 73404419 73404440 -28468729 + AT_rich Low_complexity Low_complexity 1 21 0 342 0 0 0 chr13 73405254 73405292 -28467877 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 9757 73 18 12 chr13 73405297 73406659 -28466510 - SVA Other Other -17 1369 1 356 130 0 52 chr13 73406659 73406774 -28466395 + (GGGAGA)n Simple_repeat Simple_repeat 2 110 0 2155 125 30 30 chr13 73406779 73407148 -28466021 - L1PB1 LINE L1 -1 6150 5782 1680 144 163 0 chr13 73407792 73408105 -28465064 + THE1B LTR MaLR 1 364 0 1166 308 122 7 chr13 73408335 73409056 -28464113 + L1ME3A LINE L1 5288 6091 -79 1928 133 43 45 chr13 73410701 73411077 -28462092 - THE1C LTR MaLR 0 375 1 1794 153 0 38 chr13 73411153 73411466 -28461703 - AluSx SINE Alu -11 301 1 484 341 89 0 chr13 73411517 73411731 -28461438 + MIR SINE MIR 29 261 -1 387 138 88 21 chr13 73411816 73412125 -28461044 + (TA)n Simple_repeat Simple_repeat 1 329 0 1367 224 120 47 chr13 73412828 73413271 -28459898 - MER67D LTR ERV1 -39 475 1 21 0 0 0 chr13 73414120 73414141 -28459028 + AT_rich Low_complexity Low_complexity 1 21 0 3550 194 63 24 chr13 73414242 73415121 -28458048 - L1PA16 LINE L1 0 6166 5254 680 208 40 6 chr13 73415128 73415301 -28457868 + L1PA16 LINE L1 5051 5229 -917 197 180 20 0 chr13 73415378 73415428 -28457741 + (CAT)n Simple_repeat Simple_repeat 1 51 0 256 120 43 11 chr13 73415620 73415712 -28457457 + (TA)n Simple_repeat Simple_repeat 1 95 0 323 359 138 20 chr13 73415753 73416201 -28456968 + L2 LINE L2 2389 2889 -425 1540 76 0 67 chr13 73416215 73416453 -28456716 - AluY SINE Alu 0 311 90 237 288 48 64 chr13 73416838 73416963 -28456206 + L2 LINE L2 3190 3312 -1 26 30 0 0 chr13 73417249 73417282 -28455887 + AT_rich Low_complexity Low_complexity 1 33 0 309 339 104 51 chr13 73418529 73419069 -28454100 - L1ME3A LINE L1 -100 6070 5510 1737 68 0 87 chr13 73419069 73419334 -28453835 - AluY SINE Alu -11 300 59 309 339 104 51 chr13 73419334 73419514 -28453655 - L1ME3A LINE L1 -660 5510 5341 2316 94 0 0 chr13 73420990 73421289 -28451880 + AluSq SINE Alu 1 299 -14 3389 117 14 2 chr13 73421806 73422311 -28450858 - MER9 LTR ERVK 0 511 1 7333 36 6 0 chr13 73422584 73423497 -28449672 - L1PA4 LINE L1 -2 6153 5237 34 0 0 0 chr13 73423682 73423716 -28449453 + AT_rich Low_complexity Low_complexity 1 34 0 219 268 100 74 chr13 73423892 73424082 -28449087 + L2 LINE L2 3098 3292 -21 573 218 9 0 chr13 73424127 73424237 -28448932 + Tigger4(Zombi) DNA MER2_type 3 113 -2618 * 946 229 0 0 chr13 73424235 73424436 -28448733 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 551 277 62 20 chr13 73424452 73424647 -28448522 - MIR SINE MIR -10 252 50 1759 159 10 14 chr13 73425269 73425565 -28447604 - AluSx SINE Alu -15 297 3 386 325 8 51 chr13 73425795 73426029 -28447140 - L2 LINE L2 0 3313 3090 1936 130 21 0 chr13 73426115 73426400 -28446769 - AluSq SINE Alu -22 291 1 588 179 30 71 chr13 73426547 73426715 -28446454 - MER21A LTR ERV1 -770 161 1 830 130 12 49 chr13 73426770 73426932 -28446237 + L1MA2 LINE L1 6148 6303 -1 20026 203 36 14 chr13 73426995 73431041 -28442128 - MER21A-int LTR ERV1 -56 4135 1 3746 192 58 56 chr13 73431046 73431933 -28441236 - MER21A LTR ERV1 -8 923 36 2890 189 53 21 chr13 73432221 73432884 -28440285 - L1MC1 LINE L1 0 6333 5650 245 235 24 35 chr13 73432880 73432965 -28440204 + L1MC5 LINE L1 7651 7734 -227 * 294 363 0 0 chr13 73433972 73434085 -28439084 - LTR33 LTR ERVL -399 122 10 3019 55 0 3 chr13 73434402 73434782 -28438387 - L1PA7 LINE L1 0 6154 5776 378 107 0 0 chr13 73434819 73434875 -28438294 + (TA)n Simple_repeat Simple_repeat 1 56 0 28 48 0 0 chr13 73434882 73434924 -28438245 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr13 73435356 73435379 -28437790 + AT_rich Low_complexity Low_complexity 1 23 0 426 312 41 46 chr13 73435509 73435727 -28437442 + MIR SINE MIR 42 258 -4 253 229 156 9 chr13 73435775 73435884 -28437285 - L1ME3A LINE L1 -5 6165 6041 1500 233 71 28 chr13 73436656 73437120 -28436049 - L1MA9 LINE L1 -36 6276 5793 1225 179 21 62 chr13 73437294 73437584 -28435585 - L1MA9 LINE L1 -531 5781 5504 319 225 88 25 chr13 73438320 73438428 -28434741 - AluJb SINE Alu 0 310 198 279 228 18 18 chr13 73438378 73438435 -28434734 + AluJ/F(R)AM SINE Alu 139 195 -107 * 1073 228 0 17 chr13 73438435 73438667 -28434502 - AluJo SINE Alu -84 228 1 1217 220 118 6 chr13 73439720 73440075 -28433094 + MSTD LTR MaLR 1 395 -1 444 19 0 0 chr13 73440659 73440712 -28432457 + (CA)n Simple_repeat Simple_repeat 2 54 0 300 111 0 0 chr13 73441496 73441541 -28431628 + (CCTA)n Simple_repeat Simple_repeat 2 46 0 1976 112 7 7 chr13 73441603 73441904 -28431265 + AluSp SINE Alu 6 306 0 21 57 0 0 chr13 73443376 73443411 -28429758 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr13 73443892 73443930 -28429239 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr13 73444299 73444331 -28428838 + AT_rich Low_complexity Low_complexity 1 32 0 232 102 41 0 chr13 73444344 73444393 -28428776 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 355 247 100 63 chr13 73444404 73444594 -28428575 - MLT1J LTR MaLR -2 509 313 1841 171 43 6 chr13 73445160 73445510 -28427659 - THE1B LTR MaLR 0 364 2 10101 123 22 27 chr13 73445511 73447085 -28426084 - THE1B-int LTR MaLR 0 1580 15 2038 153 43 3 chr13 73447093 73447440 -28425729 - THE1B LTR MaLR -3 361 1 35 54 0 0 chr13 73449736 73449792 -28423377 + AT_rich Low_complexity Low_complexity 1 56 0 409 362 152 8 chr13 73449808 73450325 -28422844 + L2 LINE L2 2691 3280 -33 228 184 0 0 chr13 73451248 73451297 -28421872 + (CA)n Simple_repeat Simple_repeat 2 50 0 1178 256 60 9 chr13 73451569 73452015 -28421154 - Charlie4a DNA MER1_type -10 498 30 184 159 16 16 chr13 73452094 73452157 -28421012 + T-rich Low_complexity Low_complexity 4 66 0 23 78 0 0 chr13 73452382 73452433 -28420736 + AT_rich Low_complexity Low_complexity 1 51 0 198 300 10 90 chr13 73453103 73453203 -28419966 + L2 LINE L2 83 174 -3140 342 366 38 26 chr13 73453209 73453474 -28419695 + L2 LINE L2 3036 3303 -10 549 309 83 46 chr13 73454865 73455189 -28417980 - MLT1I LTR MaLR 0 409 74 1836 114 8 0 chr13 73455872 73456135 -28417034 + AluSp SINE Alu 44 308 -5 417 379 63 13 chr13 73456291 73456608 -28416561 - L3 LINE CR1 -31 1546 1214 259 333 101 31 chr13 73456712 73456841 -28416328 - L2 LINE L2 -1 3271 3134 185 0 40 0 chr13 73457187 73457212 -28415957 + (CAA)n Simple_repeat Simple_repeat 2 27 0 543 266 56 64 chr13 73458671 73458698 -28414471 - MER46C DNA MER2_type -71 267 241 1563 162 37 34 chr13 73458698 73458994 -28414175 - AluJb SINE Alu -11 301 5 543 266 56 64 chr13 73458994 73459233 -28413936 - MER46C DNA MER2_type -97 241 3 302 395 65 0 chr13 73459516 73459640 -28413529 + L2 LINE L2 3141 3272 0 9719 180 143 45 chr13 73461623 73463826 -28409343 + Tigger1 DNA MER2_type 1 2418 0 404 269 65 0 chr13 73465122 73465230 -28407939 - FLAM_A SINE Alu -18 115 1 293 236 24 47 chr13 73465294 73465421 -28407748 + L1MCc LINE L1 51 174 -6249 1115 204 90 90 chr13 73466336 73466816 -28406353 - MLT1C LTR MaLR 0 467 1 258 391 0 16 chr13 73466891 73467019 -28406150 - MIR SINE MIR 0 262 137 27 29 0 0 chr13 73468317 73468351 -28404818 + AT_rich Low_complexity Low_complexity 1 34 0 198 307 73 51 chr13 73469422 73469559 -28403610 - MIR SINE MIR -63 199 60 2081 122 0 13 chr13 73470490 73470793 -28402376 - AluSq SINE Alu -14 299 1 1733 161 7 3 chr13 73471944 73472242 -28400927 + AluSx SINE Alu 3 301 -11 285 361 76 13 chr13 73473241 73473479 -28399690 + L2 LINE L2 2641 2893 -421 193 283 43 0 chr13 73473754 73473800 -28399369 + L2 LINE L2 3243 3290 -23 424 280 11 11 chr13 73474631 73474724 -28398445 - MER5A DNA MER1_type -84 105 13 23 68 0 0 chr13 73475508 73475552 -28397617 + AT_rich Low_complexity Low_complexity 1 44 0 233 237 42 8 chr13 73476201 73476319 -28396850 + (TATAA)n Simple_repeat Simple_repeat 5 126 0 21 0 0 0 chr13 73476557 73476578 -28396591 + AT_rich Low_complexity Low_complexity 1 21 0 1699 136 0 68 chr13 73476693 73477002 -28396167 + AluSx SINE Alu 7 294 -18 6601 68 16 1 chr13 73477674 73479003 -28394166 + L1PA7 LINE L1 4802 6143 -11 22 0 0 0 chr13 73531701 73531723 -28341446 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr13 73532512 73532556 -28340613 + AT_rich Low_complexity Low_complexity 1 44 0 725 267 43 29 chr13 73533742 73533952 -28339217 + MER76 LTR ERV 38 250 -438 180 279 23 0 chr13 73534190 73534233 -28338936 + MIR SINE MIR 52 95 -167 183 309 155 31 chr13 73534359 73534456 -28338713 - L2 LINE L2 -21 3251 3143 22 0 0 0 chr13 73534620 73534642 -28338527 + AT_rich Low_complexity Low_complexity 1 22 0 371 227 20 13 chr13 73534825 73534975 -28338194 + GA-rich Low_complexity Low_complexity 2 152 0 225 243 28 0 chr13 73534993 73535100 -28338069 + GA-rich Low_complexity Low_complexity 3 112 0 4554 199 19 16 chr13 73537034 73538261 -28334908 + L1MB3 LINE L1 4948 6183 0 182 374 78 30 chr13 73538692 73539088 -28334081 - L2 LINE L2 -1291 2023 1609 312 286 12 0 chr13 73540835 73540919 -28332250 - L2 LINE L2 0 3313 3229 230 305 124 9 chr13 73541617 73541722 -28331447 + MIR SINE MIR 32 148 -114 25 31 0 0 chr13 73542383 73542415 -28330754 + AT_rich Low_complexity Low_complexity 1 32 0 212 254 0 18 chr13 73543256 73543311 -28329858 + GA-rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr13 73543550 73543580 -28329589 + AT_rich Low_complexity Low_complexity 1 30 0 11383 32 6 0 chr13 73543644 73545834 -28327335 + L1PA3 LINE L1 4021 6213 0 1215 47 0 0 chr13 73546257 73546406 -28326763 - AluY SINE Alu -4 307 159 23 68 0 0 chr13 73546820 73546864 -28326305 + AT_rich Low_complexity Low_complexity 1 44 0 261 57 0 0 chr13 73547985 73548020 -28325149 + (CA)n Simple_repeat Simple_repeat 2 36 0 2188 108 3 0 chr13 73549415 73549710 -28323459 + AluSg SINE Alu 1 296 -14 1337 162 43 47 chr13 73549908 73550013 -28323156 + MER73 LTR ERVL 368 472 -172 2041 142 84 102 chr13 73550013 73550535 -28322634 - LTR64 LTR ERVK 0 513 1 1337 162 43 47 chr13 73550535 73550707 -28322462 + MER73 LTR ERVL 472 644 0 22 70 0 0 chr13 73551528 73551571 -28321598 + AT_rich Low_complexity Low_complexity 1 43 0 2773 3 0 0 chr13 73551728 73552030 -28321139 + AluYa5 SINE Alu 1 302 -9 21 71 0 0 chr13 73552932 73552974 -28320195 + AT_rich Low_complexity Low_complexity 1 42 0 32 26 0 0 chr13 73553106 73553145 -28320024 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr13 73553672 73553695 -28319474 + AT_rich Low_complexity Low_complexity 1 23 0 387 0 0 0 chr13 73555778 73555821 -28317348 + (TC)n Simple_repeat Simple_repeat 2 44 0 279 0 0 0 chr13 73555820 73555851 -28317318 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 24 53 0 0 chr13 73556647 73556685 -28316484 + AT_rich Low_complexity Low_complexity 1 38 0 619 343 26 22 chr13 73557157 73557425 -28315744 + ERVL LTR ERVL 1679 1947 -3049 1806 325 70 45 chr13 73557525 73558940 -28314229 + ERVL LTR ERVL 2092 3582 -1903 916 94 8 0 chr13 73558965 73559093 -28314076 - AluSc SINE Alu -180 129 1 1370 318 75 70 chr13 73559093 73560543 -28312626 + ERVL LTR ERVL 3256 5105 -659 490 297 7 0 chr13 73560930 73561068 -28312101 + LTR16A1 LTR ERVL 1 139 -318 520 252 55 76 chr13 73561259 73561497 -28311672 + LTR16A1 LTR ERVL 224 456 -1 208 173 0 67 chr13 73561740 73561815 -28311354 + T-rich Low_complexity Low_complexity 2 71 0 495 96 149 21 chr13 73561876 73561970 -28311199 + LTR54 LTR ERV1 1 106 -404 552 222 24 16 chr13 73564260 73564386 -28308783 + MER94 DNA DNA 1 127 -7 296 225 50 50 chr13 73565719 73565799 -28307370 + MLT1I LTR MaLR 98 177 -232 210 150 0 0 chr13 73567116 73567156 -28306013 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 848 211 31 0 chr13 73567162 73567323 -28305846 - Tigger3(Golem) DNA MER2_type 0 3038 2873 242 29 29 0 chr13 73567835 73567870 -28305299 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 459 134 55 18 chr13 73568384 73568548 -28304621 + (TA)n Simple_repeat Simple_repeat 1 170 0 354 164 0 86 chr13 73568553 73568705 -28304464 + (TATAA)n Simple_repeat Simple_repeat 1 139 0 268 176 29 0 chr13 73568913 73568981 -28304188 + (TA)n Simple_repeat Simple_repeat 1 70 0 303 28 0 0 chr13 73569691 73569727 -28303442 + (TC)n Simple_repeat Simple_repeat 2 37 0 208 367 120 13 chr13 73569941 73570099 -28303070 + L2 LINE L2 2892 3066 -206 469 312 42 30 chr13 73571350 73571683 -28301486 + L1ME4a LINE L1 5519 5855 -266 48 18 0 0 chr13 73573355 73573410 -28299759 + AT_rich Low_complexity Low_complexity 1 55 0 225 188 31 16 chr13 73573454 73573518 -28299651 + (TA)n Simple_repeat Simple_repeat 1 65 0 1986 226 37 33 chr13 73573560 73574168 -28299001 - LTR27 LTR ERV1 -141 495 1 753 244 61 166 chr13 73574821 73575653 -28297516 + LTR41 LTR ERVL 2 746 -27 510 308 190 11 chr13 73575864 73576143 -28297026 + L3 LINE CR1 1140 1468 -109 28 29 0 0 chr13 73576172 73576207 -28296962 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr13 73576957 73576984 -28296185 + AT_rich Low_complexity Low_complexity 1 27 0 189 375 0 0 chr13 73577170 73577234 -28295935 - L2 LINE L2 -10 3262 3199 270 284 55 75 chr13 73577967 73578046 -28295123 - LTR33 LTR ERVL -320 201 122 1476 233 28 3 chr13 73578046 73578402 -28294767 + MLT1A1 LTR MaLR 1 365 0 270 284 55 75 chr13 73578402 73578523 -28294646 - LTR33 LTR ERVL -399 122 5 244 339 47 39 chr13 73578618 73578745 -28294424 - L2 LINE L2 -534 2780 2653 1907 161 0 0 chr13 73578872 73579202 -28293967 + AluSx SINE Alu 1 312 0 260 330 168 20 chr13 73579345 73579542 -28293627 - L2 LINE L2 -943 2371 2146 1592 262 55 57 chr13 73579580 73580435 -28292734 + L1ME2 LINE L1 4151 5003 -1143 252 0 0 0 chr13 73580485 73580513 -28292656 + (A)n Simple_repeat Simple_repeat 1 28 0 1561 258 44 32 chr13 73580622 73581188 -28291981 + L1ME2 LINE L1 5331 5903 -261 431 314 46 0 chr13 73581191 73581344 -28291825 + L1ME2 LINE L1 6003 6162 -2 1908 169 0 3 chr13 73581671 73581978 -28291191 + AluJb SINE Alu 3 308 -4 21 36 0 0 chr13 73582119 73582147 -28291022 + AT_rich Low_complexity Low_complexity 1 28 0 1507 246 71 42 chr13 73582639 73583143 -28290026 + MLT2B1 LTR ERVL 2 520 0 230 333 20 46 chr13 73583733 73583886 -28289283 - L1ME3A LINE L1 -208 5962 5814 490 351 28 0 chr13 73584492 73584703 -28288466 - MIR SINE MIR 0 262 46 4578 49 2 9 chr13 73585224 73585799 -28287370 + L1PA7 LINE L1 5461 6031 -123 296 29 0 0 chr13 73586961 73586996 -28286173 - MADE1 DNA Mariner -45 35 1 225 132 75 0 chr13 73587002 73587055 -28286114 + (TA)n Simple_repeat Simple_repeat 2 58 0 1496 158 37 29 chr13 73588227 73588500 -28284669 + AluSq SINE Alu 10 284 -29 378 346 177 52 chr13 73588686 73589870 -28283299 - L2 LINE L2 -343 2971 1640 589 303 133 0 chr13 73590006 73590217 -28282952 - MIR SINE MIR -19 243 5 438 310 103 10 chr13 73590918 73591121 -28282048 + MIR SINE MIR 26 247 -15 322 237 55 53 chr13 73591257 73591409 -28281760 + MIR SINE MIR 69 221 -41 1745 129 96 0 chr13 73591688 73591959 -28281210 - AluSx SINE Alu -15 297 1 328 180 21 21 chr13 73592116 73592315 -28280854 + (TA)n Simple_repeat Simple_repeat 1 199 0 28 29 0 0 chr13 73592482 73592517 -28280652 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr13 73593470 73593506 -28279663 + AT_rich Low_complexity Low_complexity 1 36 0 249 344 24 24 chr13 73593592 73593717 -28279452 + L2 LINE L2 3188 3312 -1 31 0 0 0 chr13 73593844 73593875 -28279294 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr13 73594115 73594136 -28279033 + (T)n Simple_repeat Simple_repeat 1 21 0 194 260 20 20 chr13 73594452 73594502 -28278667 + L3 LINE CR1 1527 1576 -1 470 325 46 30 chr13 73594609 73594846 -28278323 + MLT1I LTR MaLR 96 336 -73 1309 204 71 4 chr13 73595409 73595689 -28277480 - AluJo SINE Alu -1 311 13 1788 263 71 4 chr13 73595951 73596513 -28276656 - L1MC4 LINE L1 -216 7826 7227 355 195 0 0 chr13 73596515 73596592 -28276577 - L1MC4 LINE L1 -966 7076 7000 25 31 0 0 chr13 73597184 73597216 -28275953 + AT_rich Low_complexity Low_complexity 1 32 0 498 290 0 0 chr13 73597704 73597835 -28275334 - MIR SINE MIR -34 228 98 246 287 115 25 chr13 73598036 73598158 -28275011 - MIR SINE MIR -10 252 120 217 306 61 10 chr13 73598305 73598403 -28274766 - MIR SINE MIR -111 151 49 3450 186 15 11 chr13 73599278 73599928 -28273241 + Tigger1 DNA MER2_type 1 653 -1765 573 216 58 0 chr13 73599929 73600106 -28273063 - L1 LINE L1 -1055 5091 4903 1346 207 7 0 chr13 73600179 73600469 -28272700 - L1 LINE L1 -1213 4933 4642 1548 209 17 15 chr13 73600608 73601010 -28272159 - L1 LINE L1 -1501 4645 4243 2561 164 46 8 chr13 73601010 73601476 -28271693 + L1PB4 LINE L1 5660 6153 -3 9840 152 27 17 chr13 73601495 73602895 -28270274 + Tigger1 DNA MER2_type 640 2063 -355 2327 60 0 0 chr13 73602895 73603232 -28269937 - AluY SINE Alu 0 337 1 9840 152 27 17 chr13 73603232 73603591 -28269578 + Tigger1 DNA MER2_type 2063 2417 -1 338 312 110 48 chr13 73603844 73604200 -28268969 - L1ME LINE L1 -520 5642 5265 768 282 50 62 chr13 73604754 73605176 -28267993 - L1MC5 LINE L1 -741 8015 7599 299 44 22 0 chr13 73605176 73605221 -28267948 + (CA)n Simple_repeat Simple_repeat 1 46 0 768 282 50 62 chr13 73605221 73605333 -28267836 - L1MC5 LINE L1 -1157 7599 7487 23 33 0 0 chr13 73606213 73606243 -28266926 + AT_rich Low_complexity Low_complexity 1 30 0 182 313 14 88 chr13 73609118 73609265 -28263904 - MER5A DNA MER1_type -19 170 35 25 0 0 0 chr13 73609314 73609339 -28263830 + AT_rich Low_complexity Low_complexity 1 25 0 706 266 24 69 chr13 73609371 73609706 -28263463 - L1ME1 LINE L1 -91 6075 5756 456 243 0 0 chr13 73609826 73609937 -28263232 - L1MA10 LINE L1 -5 6329 6219 1419 208 33 141 chr13 73609952 73610695 -28262474 - L1MC5 LINE L1 -743 6198 6163 1792 105 95 11 chr13 73610695 73610980 -28262189 + AluSg SINE Alu 1 309 -1 1419 208 33 141 chr13 73610980 73611479 -28261690 - L1MC5 LINE L1 -778 6163 5612 249 327 28 0 chr13 73611472 73611579 -28261590 - L1MC5 LINE L1 -2995 3946 3837 * 237 254 0 0 chr13 73611599 73611658 -28261511 + (TA)n Simple_repeat Simple_repeat 2 60 0 1274 292 80 35 chr13 73611679 73612922 -28260247 - L1MC5 LINE L1 -3124 3817 2530 1952 131 3 3 chr13 73612922 73613213 -28259956 + AluSx SINE Alu 3 293 -19 1274 292 80 35 chr13 73613213 73613622 -28259547 - L1MC5 LINE L1 -4411 2530 2141 1068 295 103 76 chr13 73613741 73615078 -28258091 - L1MC5 LINE L1 -4887 1536 164 198 0 0 0 chr13 73615193 73615215 -28257954 + (TA)n Simple_repeat Simple_repeat 2 23 0 405 0 0 0 chr13 73615822 73615867 -28257302 + (CA)n Simple_repeat Simple_repeat 2 46 0 956 9 0 0 chr13 73616007 73616117 -28257052 - L1PA3 LINE L1 -595 5560 5451 5201 21 7 8 chr13 73616117 73616728 -28256441 + L1PA3 LINE L1 5539 6155 0 447 337 62 0 chr13 73616982 73617160 -28256009 - MIR SINE MIR 0 262 74 575 287 147 0 chr13 73617211 73617368 -28255801 - MER5A DNA MER1_type 0 189 10 242 299 67 10 chr13 73617660 73617808 -28255361 + L1ME LINE L1 5666 5821 -341 1908 159 3 3 chr13 73617851 73618159 -28255010 + AluSx SINE Alu 5 312 0 703 179 19 6 chr13 73618398 73618560 -28254609 - L1MB2 LINE L1 -1 6170 6007 22 56 0 0 chr13 73619720 73619756 -28253413 + AT_rich Low_complexity Low_complexity 1 36 0 455 124 0 0 chr13 73619951 73620040 -28253129 + AluSc SINE Alu 221 309 0 436 303 80 6 chr13 73620139 73620314 -28252855 + MER5A DNA MER1_type 2 189 0 261 287 238 0 chr13 73621585 73621728 -28251441 + MER5A DNA MER1_type 11 187 -2 2194 125 46 14 chr13 73621846 73622197 -28250972 - THE1B LTR MaLR 0 364 3 9011 101 97 36 chr13 73622201 73623685 -28249484 - THE1B-int LTR MaLR -6 1574 1 1462 117 48 17 chr13 73623685 73623916 -28249253 - THE1B LTR MaLR 0 364 127 224 221 54 148 chr13 73624375 73624524 -28248645 - MIR SINE MIR -60 202 68 21 0 0 0 chr13 73625398 73625419 -28247750 + AT_rich Low_complexity Low_complexity 1 21 0 2169 108 0 13 chr13 73625605 73625919 -28247250 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr13 73626585 73626610 -28246559 + AT_rich Low_complexity Low_complexity 1 25 0 638 334 52 6 chr13 73627265 73627591 -28245578 + LTR16B LTR ERVL 124 464 0 373 332 59 44 chr13 73627975 73628315 -28244854 - HAL1 LINE L1 -768 1739 1395 402 230 237 15 chr13 73630305 73630440 -28242729 + MER5A DNA MER1_type 25 189 0 294 29 0 0 chr13 73631075 73631110 -28242059 + (TG)n Simple_repeat Simple_repeat 1 35 0 589 215 194 51 chr13 73633252 73633537 -28239632 + MER57A LTR ERV1 102 403 0 198 171 0 0 chr13 73633559 73633600 -28239569 + A-rich Low_complexity Low_complexity 5 45 0 234 0 0 0 chr13 73633925 73633951 -28239218 + (T)n Simple_repeat Simple_repeat 1 26 0 435 257 125 60 chr13 73634431 73634636 -28238533 + MIR SINE MIR 36 249 -13 1982 128 3 0 chr13 73636324 73636613 -28236556 - AluSq SINE Alu -23 290 1 30 27 0 0 chr13 73638639 73638676 -28234493 + AT_rich Low_complexity Low_complexity 1 37 0 183 378 0 12 chr13 73639118 73639200 -28233969 + MIR SINE MIR 34 114 -148 207 344 169 26 chr13 73639257 73639411 -28233758 + MIR SINE MIR 31 206 -56 225 310 17 103 chr13 73639668 73639842 -28233327 + MIR3 SINE MIR 37 195 -13 21 36 0 0 chr13 73640290 73640318 -28232851 + AT_rich Low_complexity Low_complexity 1 28 0 39 22 0 0 chr13 73640932 73640978 -28232191 + AT_rich Low_complexity Low_complexity 1 46 0 294 281 22 11 chr13 73641426 73641515 -28231654 - MIR SINE MIR -56 206 117 1948 122 37 0 chr13 73641757 73642059 -28231110 + AluSx SINE Alu 7 318 0 6805 68 23 8 chr13 73642078 73643200 -28229969 - L1PA8 LINE L1 -3 6169 5048 24 53 0 0 chr13 73643226 73643264 -28229905 + AT_rich Low_complexity Low_complexity 1 38 0 3592 223 32 27 chr13 73643318 73644315 -28228854 + L1MA9 LINE L1 5272 6273 -39 23 0 0 0 chr13 73644344 73644367 -28228802 + AT_rich Low_complexity Low_complexity 1 23 0 3237 201 44 38 chr13 73644499 73645320 -28227849 - LTR1B LTR ERV1 0 826 1 25 31 0 0 chr13 73646297 73646329 -28226840 + AT_rich Low_complexity Low_complexity 1 32 0 264 170 0 0 chr13 73646416 73646469 -28226700 + (TA)n Simple_repeat Simple_repeat 2 54 0 444 262 55 21 chr13 73647134 73647279 -28225890 - MLT1H LTR MaLR -19 530 381 1326 229 48 88 chr13 73647809 73648263 -28224906 - MLT1C LTR MaLR 0 467 32 21 0 0 0 chr13 73648887 73648908 -28224261 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 73649835 73649857 -28223312 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 73650442 73650467 -28222702 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr13 73651271 73651296 -28221873 + AT_rich Low_complexity Low_complexity 1 25 0 184 375 80 9 chr13 73651321 73651433 -28221736 - L2 LINE L2 -12 3260 3141 2420 25 0 0 chr13 73652965 73653251 -28219918 + L1PA2 LINE L1 5870 6155 0 286 329 117 15 chr13 73653758 73653895 -28219274 + L2 LINE L2 2914 3064 -208 2293 149 15 66 chr13 73653944 73654040 -28219129 - Tigger2a DNA MER2_type -2274 434 335 2137 121 0 10 chr13 73654040 73654353 -28218816 + AluSg SINE Alu 1 310 0 2293 149 15 66 chr13 73654353 73654713 -28218456 - Tigger2a DNA MER2_type -2373 335 1 200 239 0 22 chr13 73654720 73654766 -28218403 + L2 LINE L2 3180 3224 -89 22 56 0 0 chr13 73656060 73656096 -28217073 + AT_rich Low_complexity Low_complexity 1 36 0 263 33 0 0 chr13 73656171 73656201 -28216968 + U6 snRNA snRNA 1 30 -77 1525 208 13 3 chr13 73656654 73656952 -28216217 - MER74C LTR ERVL 0 460 160 585 209 17 0 chr13 73657086 73657201 -28215968 - MER74C LTR ERVL -304 156 40 249 108 0 0 chr13 73658013 73658050 -28215119 + (TA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr13 73659224 73659247 -28213922 + AT_rich Low_complexity Low_complexity 1 23 0 317 314 7 57 chr13 73659923 73660063 -28213106 - L2 LINE L2 -2 3311 3179 22 0 0 0 chr13 73660590 73660612 -28212557 + AT_rich Low_complexity Low_complexity 1 22 0 188 365 55 14 chr13 73660910 73661055 -28212114 + MIR SINE MIR 93 243 -19 439 224 15 67 chr13 73661194 73661328 -28211841 - HUERS-P2 LTR ERV1 -2961 127 1 3497 138 51 68 chr13 73661328 73662126 -28211043 - LTR1 LTR ERV1 0 785 1 545 291 12 35 chr13 73662504 73662676 -28210493 - MER63B DNA MER1_type -268 168 1 198 0 0 0 chr13 73663027 73663049 -28210120 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 4407 179 14 66 chr13 73663998 73664980 -28208189 + L1MCa LINE L1 23 953 -5473 2738 212 38 38 chr13 73664980 73665157 -28208012 + MER73 LTR ERVL 12 188 -456 189 0 0 0 chr13 73665157 73665178 -28207991 + (TA)n Simple_repeat Simple_repeat 2 22 0 2738 212 38 38 chr13 73665178 73665631 -28207538 + MER73 LTR ERVL 187 642 -2 2899 176 41 28 chr13 73665634 73666405 -28206764 + L1MCa LINE L1 950 1819 -4607 1957 263 65 1 chr13 73666396 73667057 -28206112 + L1M4 LINE L1 3141 3843 -2303 * 350 127 0 0 chr13 73667124 73667179 -28205990 + L1MA7 LINE L1 6187 6241 -50 3078 163 12 62 chr13 73667182 73667862 -28205307 + L1PB4 LINE L1 5506 6151 -5 30 0 0 0 chr13 73668896 73668926 -28204243 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr13 73669035 73669069 -28204100 + (TA)n Simple_repeat Simple_repeat 2 35 0 256 113 38 0 chr13 73669120 73669173 -28203996 + L1MA7 LINE L1 6231 6285 -6 757 248 43 0 chr13 73669183 73669413 -28203756 + L1M4 LINE L1 3839 4078 -2068 350 157 15 23 chr13 73669493 73669589 -28203580 + Alu SINE Alu 1 53 -248 2821 204 153 35 chr13 73670095 73671098 -28202071 + Charlie1 DNA MER1_type 1641 2761 0 683 256 33 60 chr13 73671124 73671339 -28201830 - MER58A DNA MER1_type -15 209 1 1184 299 94 29 chr13 73672275 73672820 -28200349 + L2 LINE L2 1791 2370 -944 217 311 96 40 chr13 73673809 73673986 -28199183 + MIR SINE MIR 73 259 -3 227 254 55 0 chr13 73674904 73674959 -28198210 + MIR3 SINE MIR 123 180 -28 1678 148 81 0 chr13 73676091 73676362 -28196807 + AluSx SINE Alu 1 293 -19 185 267 22 0 chr13 73676472 73676517 -28196652 + L2 LINE L2 3262 3307 -6 212 289 33 111 chr13 73676541 73676721 -28196448 - MIR SINE MIR -77 185 20 2614 62 0 6 chr13 73676968 73677308 -28195861 - L1PA7 LINE L1 -1 6153 5816 1540 51 5 0 chr13 73677308 73677503 -28195666 + L1PA7 LINE L1 5620 5815 -339 22 0 0 0 chr13 73678787 73678809 -28194360 + AT_rich Low_complexity Low_complexity 1 22 0 321 48 16 48 chr13 73679706 73679768 -28193401 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 215 254 32 16 chr13 73679915 73679978 -28193191 - MIR SINE MIR -111 151 88 32 0 0 0 chr13 73680093 73680125 -28193044 + AT_rich Low_complexity Low_complexity 1 32 0 294 286 88 7 chr13 73680642 73680789 -28192380 + MIR SINE MIR 94 252 -10 231 273 30 0 chr13 73682018 73682084 -28191085 - L1MC4 LINE L1 -1361 6681 6614 2220 117 0 57 chr13 73682133 73682517 -28190652 - L1PB1 LINE L1 -5 6146 5785 751 174 0 7 chr13 73682560 73682698 -28190471 - L1PB1 LINE L1 -360 5791 5655 1466 224 76 72 chr13 73682712 73683172 -28189997 - MLT2B1 LTR ERVL -58 462 1 238 184 105 26 chr13 73683978 73684054 -28189115 + LTR50 LTR ERVL 712 793 -2 195 222 22 22 chr13 73684067 73684112 -28189057 + L2 LINE L2 3216 3260 -12 21 36 0 0 chr13 73684418 73684446 -28188723 + AT_rich Low_complexity Low_complexity 1 28 0 265 194 32 11 chr13 73684484 73684577 -28188592 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 23 33 0 0 chr13 73685538 73685568 -28187601 + AT_rich Low_complexity Low_complexity 1 30 0 783 285 221 24 chr13 73685820 73686051 -28187118 - L2 LINE L2 0 3313 3129 195 69 0 0 chr13 73686051 73686080 -28187089 + (TG)n Simple_repeat Simple_repeat 1 29 0 783 285 221 24 chr13 73686080 73686564 -28186605 - L2 LINE L2 -184 3129 2463 495 271 37 65 chr13 73686597 73686811 -28186358 - MIR SINE MIR -41 221 14 252 311 192 31 chr13 73686833 73687093 -28186076 - L2 LINE L2 -853 2461 2160 21 0 0 0 chr13 73687198 73687219 -28185950 + AT_rich Low_complexity Low_complexity 1 21 0 651 311 37 8 chr13 73687704 73687945 -28185224 - MIR SINE MIR -5 257 10 406 254 89 84 chr13 73688414 73688567 -28184602 - MER58C DNA MER1_type -2206 214 58 2273 113 0 0 chr13 73688567 73688868 -28184301 + AluSx SINE Alu 5 305 -7 406 254 89 84 chr13 73688868 73688927 -28184242 - MER58C DNA MER1_type -2362 58 1 587 293 65 55 chr13 73689007 73689314 -28183855 - L2 LINE L2 0 3313 3004 354 318 171 38 chr13 73689488 73689727 -28183442 - L2 LINE L2 -374 2940 2670 185 290 47 103 chr13 73690224 73690438 -28182731 + L2 LINE L2 2622 2823 -491 181 379 32 0 chr13 73690447 73690542 -28182627 + L2 LINE L2 2971 3068 -245 505 287 26 57 chr13 73691507 73691737 -28181432 - MIR SINE MIR -20 242 20 417 80 80 7 chr13 73692175 73692312 -28180857 + (TA)n Simple_repeat Simple_repeat 2 148 0 1919 141 3 3 chr13 73692312 73692596 -28180573 - AluSg SINE Alu -26 284 1 21 0 0 0 chr13 73692598 73692619 -28180550 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 73743188 73743216 -28129953 + AT_rich Low_complexity Low_complexity 1 28 0 1397 136 0 0 chr13 73743311 73743524 -28129645 - AluSq SINE Alu -2 311 99 1998 102 36 0 chr13 73743527 73743838 -28129331 + AluSq SINE Alu 1 321 0 24 77 0 0 chr13 73744051 73744103 -28129066 + AT_rich Low_complexity Low_complexity 1 52 0 32 0 0 0 chr13 73744248 73744280 -28128889 + AT_rich Low_complexity Low_complexity 1 32 0 491 311 127 18 chr13 73744868 73745206 -28127963 - L2 LINE L2 -175 3138 2768 2944 126 0 2 chr13 73745390 73745804 -28127365 - MER9 LTR ERVK -98 413 1 227 273 0 0 chr13 73746585 73746629 -28126540 + Charlie1 DNA MER1_type 1 44 -2717 1279 244 27 15 chr13 73746632 73747042 -28126127 + Charlie1 DNA MER1_type 2346 2760 -1 21 0 0 0 chr13 73747220 73747241 -28125928 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr13 73748211 73748245 -28124924 + AT_rich Low_complexity Low_complexity 1 34 0 1758 163 59 101 chr13 73749632 73750039 -28123130 - MSTC LTR MaLR 0 428 58 1682 201 0 3 chr13 73750039 73750347 -28122822 - AluJb SINE Alu -2 310 4 1758 163 59 101 chr13 73750347 73750386 -28122783 - MSTC LTR MaLR -370 58 19 478 169 220 0 chr13 73751218 73751336 -28121833 + L1MA5 LINE L1 6157 6300 0 321 316 89 58 chr13 73751895 73752208 -28120961 - L1M4 LINE L1 -1948 4198 3876 409 266 14 22 chr13 73758161 73758300 -28114869 - MER21B LTR ERV1 -397 466 329 32 26 0 0 chr13 73758442 73758481 -28114688 + AT_rich Low_complexity Low_complexity 1 39 0 7475 36 2 0 chr13 73758481 73759852 -28113317 - L1PA3 LINE L1 -3 6152 4781 7106 37 0 28 chr13 73759852 73760762 -28112407 + L1P LINE L1 3845 4729 -1417 749 289 137 54 chr13 73760758 73761571 -28111598 - L1M4 LINE L1 -2291 3855 2935 * 4867 122 3 3 chr13 73761571 73762298 -28110871 + L1PA13 LINE L1 5424 6150 -13 749 289 137 54 chr13 73762298 73762525 -28110644 - L1M4 LINE L1 -3211 2935 2728 244 317 127 23 chr13 73762842 73763101 -28110068 + L2 LINE L2 3027 3312 -1 568 317 21 0 chr13 73763949 73764135 -28109034 + MIR SINE MIR 63 252 -10 211 235 8 89 chr13 73764221 73764300 -28108869 - MIR SINE MIR -83 125 42 209 299 30 15 chr13 73764440 73764507 -28108662 - MER5A DNA MER1_type -3 186 119 1391 195 27 14 chr13 73764512 73764809 -28108360 - AluJo SINE Alu -11 301 1 262 243 27 14 chr13 73766263 73766337 -28106832 + L1MC4 LINE L1 6652 6726 -1316 511 292 30 43 chr13 73766463 73766696 -28106473 - MLT1K LTR MaLR -4 584 355 295 188 188 38 chr13 73767117 73767248 -28105921 - MLT1H1 LTR MaLR -9 546 413 326 250 225 8 chr13 73767490 73767610 -28105559 - MLT1G1 LTR MaLR -416 179 34 186 43 0 0 chr13 73767734 73767757 -28105412 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1512 206 11 0 chr13 73767763 73768040 -28105129 - AluJb SINE Alu -32 280 1 28 29 0 0 chr13 73768120 73768155 -28105014 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 73768635 73768658 -28104511 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr13 73769356 73769384 -28103785 + AT_rich Low_complexity Low_complexity 1 28 0 264 59 0 0 chr13 73771929 73771963 -28101206 + (TG)n Simple_repeat Simple_repeat 2 35 0 2016 144 0 3 chr13 73772157 73772470 -28100699 - AluSx SINE Alu 0 312 1 210 378 91 0 chr13 73772686 73772829 -28100340 + MIR SINE MIR 11 166 -96 323 93 0 0 chr13 73772857 73772924 -28100245 + Alu SINE Alu 242 308 0 30 45 0 0 chr13 73773181 73773225 -28099944 + AT_rich Low_complexity Low_complexity 1 44 0 300 212 0 0 chr13 73773234 73773300 -28099869 + (TA)n Simple_repeat Simple_repeat 1 66 0 887 228 62 28 chr13 73773449 73773827 -28099342 + MER74A LTR ERVL 15 478 -80 789 330 82 24 chr13 73774327 73774791 -28098378 + LTR33 LTR ERVL 23 513 -8 204 182 0 0 chr13 73775595 73775639 -28097530 + (CA)n Simple_repeat Simple_repeat 1 44 0 2073 223 40 20 chr13 73775822 73776428 -28096741 - L1MB7 LINE L1 0 6184 5567 205 161 0 0 chr13 73777493 73777524 -28095645 + T-rich Low_complexity Low_complexity 2 32 0 186 274 27 68 chr13 73777545 73777618 -28095551 + MIR3 SINE MIR 118 187 -21 21 36 0 0 chr13 73778215 73778243 -28094926 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr13 73778511 73778546 -28094623 + AT_rich Low_complexity Low_complexity 1 35 0 252 0 0 0 chr13 73778570 73778598 -28094571 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 387 0 0 0 chr13 73778597 73778640 -28094529 + (GA)n Simple_repeat Simple_repeat 2 44 0 252 0 0 0 chr13 73780226 73780254 -28092915 + (CAATA)n Simple_repeat Simple_repeat 5 32 0 1400 174 80 0 chr13 73780258 73780533 -28092636 + MER7A DNA MER2_type 7 301 -45 346 161 0 0 chr13 73781937 73781993 -28091176 - AluJ/FRAM SINE Alu -31 271 216 952 198 25 25 chr13 73782045 73782242 -28090927 - AluJo SINE Alu -115 197 1 471 281 16 43 chr13 73782340 73782525 -28090644 - L1ME2 LINE L1 -91 6073 5894 26 30 0 0 chr13 73782873 73782906 -28090263 + AT_rich Low_complexity Low_complexity 1 33 0 2212 95 0 32 chr13 73783427 73783743 -28089426 - AluSc SINE Alu -1 308 3 396 214 0 82 chr13 73784136 73784234 -28088935 - L2 LINE L2 0 3313 3224 1551 234 43 3 chr13 73784745 73785096 -28088073 - MLT1A1 LTR MaLR 0 365 1 28 0 0 0 chr13 73785118 73785146 -28088023 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 73785270 73785312 -28087857 + AT_rich Low_complexity Low_complexity 1 42 0 439 118 76 0 chr13 73786337 73786481 -28086688 + (TA)n Simple_repeat Simple_repeat 1 155 0 345 337 73 43 chr13 73788070 73788370 -28084799 + HAL1 LINE L1 1373 1681 -826 202 216 11 57 chr13 73788689 73788777 -28084392 + A-rich Low_complexity Low_complexity 2 85 0 1967 125 14 0 chr13 73789260 73789566 -28083603 - AluSx SINE Alu 0 310 1 369 161 0 0 chr13 73789856 73789918 -28083251 - AluSq SINE Alu -99 204 143 438 20 0 0 chr13 73790406 73790457 -28082712 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1979 129 3 0 chr13 73790832 73791119 -28082050 + AluSx SINE Alu 1 288 -24 29 0 0 0 chr13 73791120 73791149 -28082020 + AT_rich Low_complexity Low_complexity 1 29 0 2358 61 0 16 chr13 73791154 73791493 -28081676 + AluY SINE Alu 1 311 0 204 40 0 0 chr13 73791947 73791972 -28081197 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 347 290 21 28 chr13 73792042 73792187 -28080982 - MER90 LTR ERV1 -86 528 385 * 602 241 68 21 chr13 73792185 73792421 -28080748 - MER90 LTR ERV1 -307 268 22 3026 169 63 50 chr13 73792973 73793673 -28079496 + LTR1 LTR ERV1 77 785 0 34 55 0 0 chr13 73794123 73794178 -28078991 + AT_rich Low_complexity Low_complexity 1 55 0 712 341 49 11 chr13 73794380 73794749 -28078420 + LTR16A LTR ERVL 56 438 -12 45 55 0 0 chr13 73794899 73794972 -28078197 + AT_rich Low_complexity Low_complexity 1 73 0 1370 188 35 42 chr13 73795351 73795728 -28077441 - L1MB8 LINE L1 -2 6176 5803 1987 98 15 0 chr13 73796358 73796632 -28076537 + AluSx SINE Alu 26 303 -9 1769 148 85 20 chr13 73798049 73798401 -28074768 + THE1C LTR MaLR 1 375 0 1413 225 45 81 chr13 73798468 73798576 -28074593 + MER67D LTR ERV1 1 111 -403 2113 120 7 3 chr13 73798576 73798885 -28074284 + AluSx SINE Alu 1 310 -2 1413 225 45 81 chr13 73798885 73799309 -28073860 + MER67D LTR ERV1 111 514 0 21 0 0 0 chr13 73799621 73799642 -28073527 + AT_rich Low_complexity Low_complexity 1 21 0 441 141 0 0 chr13 73799652 73799730 -28073439 - L1MA1 LINE L1 -2 6300 6223 2562 102 38 3 chr13 73799740 73799970 -28073199 + L1MA1 LINE L1 5815 6066 -236 228 35 0 0 chr13 73799970 73799999 -28073170 + (CA)n Simple_repeat Simple_repeat 2 30 0 2562 102 38 3 chr13 73799999 73800159 -28073010 + L1MA1 LINE L1 6066 6219 -83 1864 254 35 9 chr13 73802266 73802947 -28070222 - L1MC4 LINE L1 -222 7820 6960 794 250 40 38 chr13 73803029 73803446 -28069723 + LTR38 LTR ERV1 91 551 -5 844 271 56 8 chr13 73803455 73803697 -28069472 - L1MC4a LINE L1 -941 6867 6611 3431 91 2 0 chr13 73803697 73804149 -28069020 + MLT2A2 LTR ERVL 1 453 0 189 107 0 0 chr13 73804164 73804192 -28068977 + (TG)n Simple_repeat Simple_repeat 1 28 0 1028 322 40 26 chr13 73804559 73804984 -28068185 + MER77 LTR ERV1 175 605 0 196 293 146 0 chr13 73805645 73805727 -28067442 + MER5C DNA MER1_type 31 124 -200 21 57 0 0 chr13 73806453 73806488 -28066681 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 73806935 73806959 -28066210 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 73807018 73807041 -28066128 + AT_rich Low_complexity Low_complexity 1 23 0 242 286 167 32 chr13 73807157 73807283 -28065886 + L1MEc LINE L1 19 161 -6235 801 186 0 0 chr13 73807290 73807430 -28065739 + L1MA3 LINE L1 5643 5782 -509 394 75 0 0 chr13 73807430 73807483 -28065686 - L1P4 LINE L1 -422 5741 5689 2113 101 23 7 chr13 73807483 73807790 -28065379 + L1PA11 LINE L1 5863 6174 0 1861 115 22 68 chr13 73807814 73807998 -28065171 + L1MA3 LINE L1 5958 6118 -187 1538 156 82 0 chr13 73807998 73808255 -28064914 - AluSx SINE Alu -28 284 7 1861 115 22 68 chr13 73808255 73808435 -28064734 + L1MA3 LINE L1 6118 6305 0 29 28 0 0 chr13 73808441 73808477 -28064692 + AT_rich Low_complexity Low_complexity 1 36 0 372 217 24 0 chr13 73808492 73808575 -28064594 + L1MA9 LINE L1 5956 6040 -272 * 460 231 14 28 chr13 73808561 73808704 -28064465 + L1MA7 LINE L1 6140 6280 -11 4376 204 38 24 chr13 73808946 73809993 -28063176 + L1MB3 LINE L1 4154 5245 -938 1610 158 32 53 chr13 73809993 73810373 -28062796 - THE1C LTR MaLR -3 372 1 4376 204 38 24 chr13 73810373 73811323 -28061846 + L1MB3 LINE L1 5245 6181 -2 207 273 0 0 chr13 73811549 73811615 -28061554 + (TTAA)n Simple_repeat Simple_repeat 2 67 0 303 239 159 9 chr13 73811725 73811838 -28061331 + MER5C DNA MER1_type 127 256 -68 1126 262 57 26 chr13 73814035 73814528 -28058641 - Charlie4a DNA MER1_type 0 508 1 22 0 0 0 chr13 73814812 73814834 -28058335 + AT_rich Low_complexity Low_complexity 1 22 0 188 295 126 0 chr13 73815342 73815437 -28057732 - MIR SINE MIR 0 262 156 532 242 115 30 chr13 73815438 73815752 -28057417 - MSTD LTR MaLR 0 396 2 25 65 0 0 chr13 73816900 73816946 -28056223 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr13 73817002 73817031 -28056138 + AT_rich Low_complexity Low_complexity 1 29 0 356 337 74 42 chr13 73817374 73817683 -28055486 - L1MEc LINE L1 -4641 1755 1437 186 150 33 33 chr13 73817870 73817930 -28055239 + T-rich Low_complexity Low_complexity 1 60 0 24 32 0 0 chr13 73818585 73818616 -28054553 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 73819231 73819253 -28053916 + AT_rich Low_complexity Low_complexity 1 22 0 198 24 0 71 chr13 73819313 73819355 -28053814 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2177 154 20 83 chr13 73820431 73820652 -28052517 + MSTB LTR MaLR 1 180 -246 3671 54 2 12 chr13 73820652 73821133 -28052036 + L1PA7 LINE L1 5669 6144 -10 2177 154 20 83 chr13 73821133 73821366 -28051803 + MSTB LTR MaLR 180 426 0 185 116 0 23 chr13 73822456 73822499 -28050670 + (TA)n Simple_repeat Simple_repeat 2 43 0 359 293 140 68 chr13 73822716 73823023 -28050146 - MER46C DNA MER2_type -5 333 5 868 292 58 25 chr13 73824107 73824217 -28048952 - L2 LINE L2 -817 2497 2392 1954 102 0 11 chr13 73824217 73824502 -28048667 + AluSx SINE Alu 1 282 -30 228 67 0 0 chr13 73824502 73824532 -28048637 + (ATAAG)n Simple_repeat Simple_repeat 1 30 0 868 292 58 25 chr13 73824532 73824814 -28048355 - L2 LINE L2 -921 2393 2091 304 378 43 35 chr13 73824818 73825072 -28048097 - LTR33 LTR ERVL -204 317 62 1533 329 60 41 chr13 73825093 73826021 -28047148 - L2 LINE L2 -2168 1146 201 21 0 0 0 chr13 73826276 73826297 -28046872 + AT_rich Low_complexity Low_complexity 1 21 0 219 200 0 29 chr13 73826927 73826997 -28046172 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 348 304 96 27 chr13 73827224 73827444 -28045725 - L1M4 LINE L1 -1327 4819 4585 252 263 20 10 chr13 73827576 73827675 -28045494 - L1M4 LINE L1 -1742 4404 4305 259 120 160 0 chr13 73827757 73827807 -28045362 - MLT2C1 LTR ERVL 0 414 357 329 223 11 0 chr13 73827922 73828016 -28045153 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 1619 194 41 3 chr13 73828016 73828335 -28044834 - MLT2C1 LTR ERVL -66 331 1 386 328 50 73 chr13 73828431 73829050 -28044119 - L1M4 LINE L1 -2028 4118 3514 261 180 20 10 chr13 73829353 73829453 -28043716 + (TTAAA)n Simple_repeat Simple_repeat 1 101 0 548 295 108 0 chr13 73829877 73830128 -28043041 + L2 LINE L2 1903 2180 -1134 930 323 89 30 chr13 73830156 73830967 -28042202 + L2 LINE L2 1985 2843 -471 289 276 145 105 chr13 73831027 73831371 -28041798 + L2 LINE L2 2956 3313 0 6725 74 13 43 chr13 73832259 73834169 -28039000 - SVA Other Other -518 1386 71 21 0 0 0 chr13 73834185 73834206 -28038963 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 73834934 73834955 -28038214 + AT_rich Low_complexity Low_complexity 1 21 0 3236 183 17 30 chr13 73835917 73836616 -28036553 + L1MB1 LINE L1 5478 6167 -1 25 31 0 0 chr13 73837416 73837448 -28035721 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 73837666 73837687 -28035482 + AT_rich Low_complexity Low_complexity 1 21 0 222 258 0 65 chr13 73839929 73840022 -28033147 + L2 LINE L2 2931 3017 -296 2688 130 8 36 chr13 73840203 73840681 -28032488 + MER4C LTR ERV1 1 465 0 1324 153 20 76 chr13 73840684 73841057 -28032112 + MER4C-int LTR ERV1 1 434 -6164 318 26 0 0 chr13 73841080 73841119 -28032050 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1947 113 4 0 chr13 73841123 73841388 -28031781 - AluSp SINE Alu -37 276 11 289 104 0 75 chr13 73841416 73841483 -28031686 - L1PA3 LINE L1 0 6155 6094 263 75 50 0 chr13 73841484 73841524 -28031645 + MER4C-int LTR ERV1 493 534 -6064 336 118 0 118 chr13 73841612 73841714 -28031455 + MER4C-int LTR ERV1 751 840 -5758 955 212 56 19 chr13 73841810 73842074 -28031095 + MER4C-int LTR ERV1 872 1866 -3014 559 26 26 0 chr13 73842074 73842151 -28031018 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 987 205 0 0 chr13 73842154 73842315 -28030854 - MER1B DNA MER1_type -136 161 1 1308 111 56 59 chr13 73842334 73842604 -28030565 + MER4C-int LTR ERV1 1688 1956 -4642 786 185 0 7 chr13 73842604 73842739 -28030430 + AluJo SINE Alu 1 134 -178 12671 189 62 44 chr13 73842740 73846487 -28026682 + MER4C-int LTR ERV1 1461 6284 -314 273 148 62 12 chr13 73846506 73846587 -28026582 + (TA)n Simple_repeat Simple_repeat 1 85 0 551 116 52 12 chr13 73846595 73846768 -28026401 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 1467 145 3 87 chr13 73846788 73847099 -28026070 + MER4C-int LTR ERV1 6301 6585 -13 2466 157 24 11 chr13 73847123 73847582 -28025587 + MER4C LTR ERV1 1 465 0 181 160 20 20 chr13 73848080 73848130 -28025039 + CT-rich Low_complexity Low_complexity 3 52 0 22 35 0 0 chr13 73848452 73848481 -28024688 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr13 73848681 73848717 -28024452 + (TA)n Simple_repeat Simple_repeat 2 37 0 5436 151 28 3 chr13 73849405 73850680 -28022489 + L1PB2 LINE L1 4846 6149 -2 4433 210 34 3 chr13 73850973 73852804 -28020365 - L1PB4 LINE L1 -7 7587 5706 270 0 0 0 chr13 73852804 73852834 -28020335 + (TTA)n Simple_repeat Simple_repeat 1 30 0 4433 210 34 3 chr13 73852834 73852872 -28020297 - L1PB4 LINE L1 -1888 5706 5671 * 5100 255 32 11 chr13 73852863 73854769 -28018400 - L1PB4 LINE L1 -2971 4613 2663 274 116 0 0 chr13 73854775 73854818 -28018351 + MSTA LTR MaLR 6 48 -380 5225 191 37 11 chr13 73854821 73855803 -28017366 + MSTA-int LTR MaLR 645 1651 0 2304 148 67 7 chr13 73855804 73856208 -28016961 + MSTA LTR MaLR 1 428 0 3840 281 23 41 chr13 73856224 73858100 -28015069 - L1PB4 LINE L1 -4924 2657 7 * 6422 236 34 17 chr13 73858095 73860082 -28013087 - L1M2 LINE L1 -2140 5425 3392 312 137 0 0 chr13 73860082 73860133 -28013036 + (TC)n Simple_repeat Simple_repeat 1 51 0 1041 144 17 6 chr13 73860133 73860306 -28012863 - AluSc SINE Alu 0 309 135 486 116 0 0 chr13 73860306 73860375 -28012794 - AluS SINE Alu -244 69 1 5848 279 133 25 chr13 73860382 73861163 -28012006 - L1M2 LINE L1 -4136 3430 2735 408 71 0 0 chr13 73861163 73861219 -28011950 + (TG)n Simple_repeat Simple_repeat 1 56 0 5848 279 133 25 chr13 73861219 73862877 -28010292 - L1M2 LINE L1 -4831 2735 726 216 0 0 0 chr13 73862879 73862903 -28010266 + (A)n Simple_repeat Simple_repeat 1 24 0 15005 24 1 0 chr13 73863144 73864962 -28008207 - L1P LINE L1 -2031 4115 2297 338 163 0 25 chr13 73865980 73866060 -28007109 + (TATAA)n Simple_repeat Simple_repeat 1 78 0 1562 245 47 26 chr13 73866291 73867156 -28006013 - L1M2 LINE L1 -3717 3848 2959 * 2401 113 32 3 chr13 73867151 73867521 -28005648 - L1PA6 LINE L1 -36 6118 5736 2324 66 7 13 chr13 73867598 73867899 -28005270 - AluY SINE Alu -12 299 1 1513 169 0 55 chr13 73867910 73868218 -28004951 - L1M2 LINE L1 -6730 759 469 22 0 0 0 chr13 73868372 73868394 -28004775 + AT_rich Low_complexity Low_complexity 1 22 0 442 345 43 91 chr13 73868491 73869117 -28004052 + L2 LINE L2 2677 3272 0 2135 105 20 0 chr13 73869245 73869551 -28003618 + AluSx SINE Alu 1 312 0 230 56 28 0 chr13 73869702 73869738 -28003431 + (TTG)n Simple_repeat Simple_repeat 3 39 0 258 299 62 14 chr13 73870950 73871094 -28002075 + MLT1I LTR MaLR 11 161 -248 383 220 0 11 chr13 73871286 73871377 -28001792 + MLT1I LTR MaLR 320 409 0 224 361 173 9 chr13 73871841 73872176 -28000993 + L2 LINE L2 1057 1446 -1868 1594 150 51 22 chr13 73872225 73872526 -28000643 - AluSq SINE Alu 0 309 1 25 0 0 0 chr13 73872583 73872608 -28000561 + AT_rich Low_complexity Low_complexity 1 25 0 5609 166 35 61 chr13 73872685 73873939 -27999230 + Tigger3b DNA MER2_type 4 1224 -7 31 0 0 0 chr13 73874132 73874163 -27999006 + AT_rich Low_complexity Low_complexity 1 31 0 2473 141 3 3 chr13 73874338 73874713 -27998456 + THE1C LTR MaLR 1 375 0 9137 123 31 57 chr13 73874713 73876333 -27996836 + THE1C-int LTR MaLR 1 1578 -2 2372 136 0 14 chr13 73876335 73876704 -27996465 + THE1C LTR MaLR 1 364 -11 23 68 0 0 chr13 73877182 73877226 -27995943 + AT_rich Low_complexity Low_complexity 1 44 0 208 207 0 0 chr13 73880225 73880312 -27992857 + GA-rich Low_complexity Low_complexity 1 87 0 25 0 0 0 chr13 73880700 73880725 -27992444 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr13 73880808 73880847 -27992322 + AT_rich Low_complexity Low_complexity 1 39 0 831 171 79 0 chr13 73883632 73883796 -27989373 + MSTA LTR MaLR 1 177 -251 879 48 0 0 chr13 73883798 73883902 -27989267 + MSTA LTR MaLR 321 424 -4 634 296 76 41 chr13 73884356 73884792 -27988377 - L1ME LINE L1 -394 5768 5318 348 111 42 0 chr13 73884793 73884865 -27988304 + (TA)n Simple_repeat Simple_repeat 1 75 0 189 0 0 0 chr13 73884865 73884886 -27988283 + (GA)n Simple_repeat Simple_repeat 2 22 0 1193 289 72 36 chr13 73884886 73885786 -27987383 - L1ME LINE L1 -917 5229 4297 2003 171 6 0 chr13 73886017 73886357 -27986812 - MER2 DNA MER2_type -1 343 2 25 75 0 0 chr13 73887220 73887273 -27985896 + AT_rich Low_complexity Low_complexity 1 53 0 25 31 0 0 chr13 73887737 73887769 -27985400 + AT_rich Low_complexity Low_complexity 1 32 0 184 151 41 27 chr13 73888243 73888316 -27984853 + (TA)n Simple_repeat Simple_repeat 1 74 0 365 349 69 0 chr13 73888483 73888672 -27984497 - MIR SINE MIR -49 213 12 22 0 0 0 chr13 73890060 73890082 -27983087 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr13 73890287 73890315 -27982854 + AT_rich Low_complexity Low_complexity 1 28 0 529 217 11 0 chr13 73891448 73891540 -27981629 - FRAM SINE Alu -63 113 21 1810 89 16 0 chr13 73891651 73891909 -27981260 - L1MA3 LINE L1 0 6305 6044 35 41 0 0 chr13 73891977 73892026 -27981143 + AT_rich Low_complexity Low_complexity 1 49 0 1872 157 40 3 chr13 73892230 73892605 -27980564 + L1MA4 LINE L1 5911 6299 -1 25 31 0 0 chr13 73892815 73892847 -27980322 + AT_rich Low_complexity Low_complexity 1 32 0 2062 93 0 35 chr13 73893028 73893366 -27979803 - AluSg SINE Alu 0 330 3 210 381 103 0 chr13 73894068 73894165 -27979004 - L2 LINE L2 -3 3269 3163 4248 190 18 16 chr13 73894294 73895216 -27977953 + L1MA10 LINE L1 5409 6332 -2 257 258 54 21 chr13 73895428 73895521 -27977648 + MIR SINE MIR 166 261 -1 518 226 22 10 chr13 73895545 73895704 -27977465 - L1MC/D LINE L1 -727 5443 5283 627 294 123 24 chr13 73895928 73896086 -27977083 - L1MC/D LINE L1 -1353 4793 4652 306 0 0 0 chr13 73896086 73896120 -27977049 + (CA)n Simple_repeat Simple_repeat 2 35 0 * 339 25 0 0 chr13 73896119 73896159 -27977010 + (TC)n Simple_repeat Simple_repeat 2 41 0 627 294 123 24 chr13 73896120 73896632 -27976537 - L1MC/D LINE L1 -1494 4652 4099 407 299 145 20 chr13 73896687 73897045 -27976124 - L1MC/D LINE L1 -2831 3315 2913 25 0 0 0 chr13 73898114 73898139 -27975030 + AT_rich Low_complexity Low_complexity 1 25 0 272 238 12 24 chr13 73898725 73898809 -27974360 + A-rich Low_complexity Low_complexity 5 87 0 214 325 12 48 chr13 73898918 73899001 -27974168 - L2 LINE L2 -19 3253 3174 985 289 93 32 chr13 73899087 73899583 -27973586 - MLT1E2 LTR MaLR -72 481 1 285 368 71 26 chr13 73899828 73900168 -27973001 - L2 LINE L2 -520 2794 2440 323 252 24 57 chr13 73900682 73900805 -27972364 + L1MC3 LINE L1 6723 6831 -954 22 0 0 0 chr13 73900905 73900927 -27972242 + AT_rich Low_complexity Low_complexity 1 22 0 208 286 0 0 chr13 73901119 73901168 -27972001 + (TA)n Simple_repeat Simple_repeat 2 50 0 1307 226 65 38 chr13 73902478 73902925 -27970244 + LTR40b LTR ERVL 4 462 0 1281 228 107 24 chr13 73902926 73903299 -27969870 + HERVL40 LTR ERVL 1 404 -5126 189 324 14 0 chr13 73903870 73903941 -27969228 + L2 LINE L2 2414 2485 -829 194 346 10 30 chr13 73903980 73904081 -27969088 + L2 LINE L2 2577 2675 -639 1757 168 29 47 chr13 73904086 73904466 -27968703 - THE1C LTR MaLR -2 373 1 227 157 0 78 chr13 73904477 73904528 -27968641 + A-rich Low_complexity Low_complexity 2 48 0 260 125 25 50 chr13 73905154 73905234 -27967935 + (TAAA)n Simple_repeat Simple_repeat 4 81 0 21 57 0 0 chr13 73906361 73906396 -27966773 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr13 73907138 73907175 -27965994 + AT_rich Low_complexity Low_complexity 1 37 0 244 374 83 13 chr13 73907681 73907911 -27965258 - L2 LINE L2 -686 2628 2383 2950 219 80 77 chr13 73908427 73909549 -27963620 - LTR28 LTR ERV1 0 1726 1 27 49 0 0 chr13 73909904 73909945 -27963224 + AT_rich Low_complexity Low_complexity 1 41 0 1990 131 61 6 chr13 73910230 73910574 -27962595 + L1PA13 LINE L1 5746 6108 -55 3238 193 49 0 chr13 73910576 73911265 -27961904 - L1 LINE L1 -886 5260 4538 283 222 0 14 chr13 73911263 73911335 -27961834 + L1 LINE L1 4481 4551 -1595 * 24 0 0 0 chr13 73911721 73911745 -27961424 + AT_rich Low_complexity Low_complexity 1 24 0 1176 272 84 13 chr13 73912573 73913037 -27960132 - MLT1D LTR MaLR 0 505 9 237 187 93 13 chr13 73913237 73913312 -27959857 - HAL1 LINE L1 -2319 188 108 4543 180 54 17 chr13 73913491 73914590 -27958579 - L1MA8 LINE L1 -4 6287 5148 1656 144 56 44 chr13 73914615 73914781 -27958388 + THE1C LTR MaLR 1 164 -211 1915 49 12 0 chr13 73914781 73915024 -27958145 - L1PA5 LINE L1 0 6154 5909 1656 144 56 44 chr13 73915024 73915279 -27957890 + THE1C LTR MaLR 164 374 -1 1060 259 12 26 chr13 73915279 73915623 -27957546 - L1MA8 LINE L1 -1021 5125 4787 295 242 21 32 chr13 73915689 73915784 -27957385 - L1MD2 LINE L1 0 6359 6266 * 1452 316 50 15 chr13 73915775 73916380 -27956789 - L1MDa LINE L1 -5814 726 101 34 0 0 0 chr13 73917512 73917546 -27955623 + AT_rich Low_complexity Low_complexity 1 34 0 6101 173 29 22 chr13 73917844 73919033 -27954136 + Tigger2 DNA MER2_type 3 1200 -1518 5889 165 34 5 chr13 73919031 73920089 -27953080 + Tigger2 DNA MER2_type 1630 2718 0 * 24 0 0 0 chr13 73920102 73920126 -27953043 + AT_rich Low_complexity Low_complexity 1 24 0 222 37 0 0 chr13 73921672 73921699 -27951470 + (TTG)n Simple_repeat Simple_repeat 1 27 0 512 136 0 0 chr13 73921845 73921959 -27951210 - Alu SINE Alu 0 326 213 1478 210 14 0 chr13 73921971 73922257 -27950912 - AluJb SINE Alu -12 300 11 213 159 0 0 chr13 73923766 73923810 -27949359 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr13 73924532 73924555 -27948614 + AT_rich Low_complexity Low_complexity 1 23 0 467 252 47 39 chr13 73925163 73925397 -27947772 + MER106A DNA MER1_type 1 236 0 817 249 83 28 chr13 73925645 73925934 -27947235 + MLT1A1 LTR MaLR 1 305 -60 1702 109 30 15 chr13 73925937 73926204 -27946965 + AluSq SINE Alu 4 274 -39 1307 126 39 24 chr13 73926234 73926441 -27946728 - AluJo SINE Alu -87 225 16 369 146 9 0 chr13 73926441 73926505 -27946664 + MLT1A1 LTR MaLR 298 396 0 316 226 22 28 chr13 73926933 73927114 -27946055 + (TA)n Simple_repeat Simple_repeat 1 180 0 814 233 0 6 chr13 73927132 73927291 -27945878 - FAM SINE Alu -17 158 1 209 141 62 31 chr13 73927314 73927378 -27945791 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 28 61 0 0 chr13 73927695 73927744 -27945425 + AT_rich Low_complexity Low_complexity 1 49 0 978 134 0 7 chr13 73927893 73928042 -27945127 - AluSc SINE Alu -75 234 87 2493 168 188 13 chr13 73928105 73928707 -27944462 + MER39 LTR ERV1 1 707 0 25 31 0 0 chr13 73930068 73930100 -27943069 + AT_rich Low_complexity Low_complexity 1 32 0 791 344 30 21 chr13 73930316 73930688 -27942481 + LTR16A LTR ERVL 69 443 -7 273 380 33 8 chr13 73930944 73931065 -27942104 + LTR67 LTR ERVL 36 159 -398 234 361 56 10 chr13 73932388 73932586 -27940583 - MIR SINE MIR -16 246 38 204 40 0 0 chr13 73932591 73932616 -27940553 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 341 252 10 0 chr13 73932629 73932732 -27940437 + (TA)n Simple_repeat Simple_repeat 1 104 0 867 283 57 57 chr13 73933344 73934011 -27939158 - L1MC5 LINE L1 -736 7225 6609 180 322 152 28 chr13 73934846 73935057 -27938112 + L2 LINE L2 2625 2861 -453 22 70 0 0 chr13 73935348 73935391 -27937778 + AT_rich Low_complexity Low_complexity 1 43 0 197 348 45 11 chr13 73935809 73935898 -27937271 - MIR SINE MIR -87 121 30 1442 190 58 52 chr13 73936443 73936806 -27936363 + MLT1A1 LTR MaLR 1 365 0 31 0 0 0 chr13 73937089 73937120 -27936049 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr13 73938106 73938132 -27935037 + AT_rich Low_complexity Low_complexity 1 26 0 429 277 9 9 chr13 73938477 73938589 -27934580 + L2 LINE L2 3201 3312 -1 542 250 43 0 chr13 73939459 73939623 -27933546 - LTR33A LTR ERVL 0 523 353 433 348 22 4 chr13 73940106 73940333 -27932836 - L1M4 LINE L1 -1988 4158 3928 300 293 110 24 chr13 73940685 73941193 -27931976 - L1M4 LINE L1 -2646 3500 2949 650 206 100 6 chr13 73941246 73941426 -27931743 + MER3 DNA MER1_type 12 208 -1 503 319 30 51 chr13 73941511 73941746 -27931423 - L2 LINE L2 -1636 1678 1449 480 133 0 0 chr13 73942961 73943044 -27930125 + (GA)n Simple_repeat Simple_repeat 2 84 0 591 304 133 23 chr13 73943114 73943423 -27929746 - L2 LINE L2 -1882 1432 1090 3553 92 53 13 chr13 73945897 73946427 -27926742 - L1MA2 LINE L1 -293 7430 6880 29 78 0 0 chr13 73946436 73946500 -27926669 + AT_rich Low_complexity Low_complexity 1 64 0 198 0 0 0 chr13 73946528 73946550 -27926619 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1339 169 20 13 chr13 73946569 73947190 -27925979 - L1MA2 LINE L1 -743 6822 6093 * 2274 127 40 10 chr13 73947185 73947586 -27925583 - L1MA2 LINE L1 -4038 3527 3115 279 150 0 67 chr13 73947616 73947676 -27925493 - L1MA2 LINE L1 -4437 3128 3073 198 0 0 0 chr13 73947786 73947808 -27925361 + (TG)n Simple_repeat Simple_repeat 1 22 0 8049 132 33 51 chr13 73947808 73948378 -27924791 - L1MA2 LINE L1 -4476 3089 2510 1923 125 0 4 chr13 73948378 73948657 -27924512 - AluSx SINE Alu -3 309 32 8049 132 33 51 chr13 73948657 73949598 -27923571 - L1MA2 LINE L1 -5055 2510 1605 3595 179 16 21 chr13 73949591 73950574 -27922595 - L1M1 LINE L1 -698 5607 4633 * 2561 99 0 3 chr13 73950610 73950965 -27922204 + L1PA7 LINE L1 5799 6152 -2 1603 151 55 0 chr13 73951222 73951494 -27921675 - AluSx SINE Alu -25 287 1 389 270 56 56 chr13 73951508 73951760 -27921409 + HAL1b LINE L1 711 962 -386 524 213 8 16 chr13 73951761 73951888 -27921281 - AluJb SINE Alu -11 301 176 1025 108 0 25 chr13 73952088 73952245 -27920924 - THE1-int LTR MaLR -556 1024 872 958 195 73 37 chr13 73952245 73952491 -27920678 - MER67C LTR ERV1 -315 395 141 5510 150 72 66 chr13 73952573 73953774 -27919395 - Tigger3b DNA MER2_type -22 1209 2 418 198 35 60 chr13 73953810 73953926 -27919243 - MER67C LTR ERV1 -594 116 4 576 360 131 17 chr13 73954153 73954844 -27918325 - L2 LINE L2 -9 3304 2529 237 224 17 0 chr13 73955351 73955409 -27917760 - L1MC5 LINE L1 -73 7888 7830 214 233 34 15 chr13 73955664 73955742 -27917427 + GA-rich Low_complexity Low_complexity 1 79 0 25 0 0 0 chr13 73956199 73956224 -27916945 + AT_rich Low_complexity Low_complexity 1 25 0 249 250 150 0 chr13 73956547 73956627 -27916542 + MLT1A2 LTR MaLR 1 92 -282 189 320 41 31 chr13 73956634 73956731 -27916438 - MIR SINE MIR -109 153 56 219 36 0 0 chr13 73957245 73957273 -27915896 + (TA)n Simple_repeat Simple_repeat 2 29 0 286 306 81 9 chr13 73957640 73957751 -27915418 + MLT1I LTR MaLR 43 161 -248 249 320 60 20 chr13 73957790 73957940 -27915229 + MLT1I LTR MaLR 252 407 -2 313 341 8 0 chr13 73957957 73958083 -27915086 + HAL1 LINE L1 603 729 -1778 270 336 54 29 chr13 73958281 73958558 -27914611 + HAL1 LINE L1 791 1074 -1433 499 281 23 5 chr13 73958593 73958810 -27914359 + HAL1 LINE L1 1144 1364 -1143 1364 222 156 8 chr13 73959437 73959834 -27913335 - MER31A LTR ERV1 -29 456 1 441 309 33 66 chr13 73959859 73960160 -27913009 + L1MEd LINE L1 608 898 -5221 1730 236 43 26 chr13 73960259 73960880 -27912289 - MER67B LTR ERV1 0 661 1 284 356 28 11 chr13 73960944 73961124 -27912045 + ERVL LTR ERVL 413 595 -5169 305 390 48 0 chr13 73961341 73961528 -27911641 + MLT1H LTR MaLR 138 333 -216 230 231 0 43 chr13 73961853 73961970 -27911199 + CT-rich Low_complexity Low_complexity 1 112 0 22 0 0 0 chr13 73962474 73962496 -27910673 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr13 73962660 73962703 -27910466 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr13 73962774 73962815 -27910354 + AT_rich Low_complexity Low_complexity 1 41 0 262 366 76 0 chr13 73963158 73963289 -27909880 - L2 LINE L2 -17 3255 3115 2049 127 10 10 chr13 73963667 73963967 -27909202 + AluSq SINE Alu 1 300 -13 261 231 43 94 chr13 73964034 73964151 -27909018 - MIR3 SINE MIR -11 197 87 229 359 42 54 chr13 73965382 73965549 -27907620 + L2 LINE L2 2545 2709 -605 1347 203 19 8 chr13 73965924 73966180 -27906989 - LTR57 LTR ERVL -7 404 146 798 142 196 0 chr13 73966223 73966371 -27906798 - LTR57 LTR ERVL -234 177 1 403 230 48 73 chr13 73966444 73966609 -27906560 + L2 LINE L2 3143 3303 -10 2272 203 40 5 chr13 73967649 73968592 -27904577 + Tigger6a DNA MER2_type 15 1072 -11 333 296 30 30 chr13 73968891 73969026 -27904143 + MIR SINE MIR 96 230 -32 185 286 98 94 chr13 73969569 73969814 -27903355 - L2 LINE L2 -555 2759 2514 21 0 0 0 chr13 73971601 73971622 -27901547 + AT_rich Low_complexity Low_complexity 1 21 0 880 277 104 70 chr13 73972870 73973339 -27899830 + LTR40a LTR ERVL 20 504 -15 24 0 0 0 chr13 73974342 73974366 -27898803 + AT_rich Low_complexity Low_complexity 1 24 0 2204 105 0 13 chr13 73974625 73974938 -27898231 - AluSc SINE Alu 0 309 1 43 35 0 0 chr13 73975862 73975919 -27897250 + AT_rich Low_complexity Low_complexity 1 57 0 1039 172 9 32 chr13 73976414 73976539 -27896630 - L1PA16 LINE L1 -1 6165 6046 2216 117 14 6 chr13 73976539 73976890 -27896279 - THE1A LTR MaLR 0 355 2 1039 172 9 32 chr13 73976890 73976985 -27896184 - L1PA16 LINE L1 -120 6046 5950 6307 193 20 9 chr13 73977056 73979130 -27894039 - L1PA16 LINE L1 -238 5928 3829 294 296 165 29 chr13 73979402 73979608 -27893561 + MIR SINE MIR 29 262 0 780 134 0 52 chr13 73979703 73979837 -27893332 + FLAM_C SINE Alu 1 127 -16 1685 227 0 27 chr13 73980281 73980682 -27892487 + MLT1B LTR MaLR 1 390 0 457 259 66 36 chr13 73981806 73981972 -27891197 - MIR SINE MIR -74 188 18 592 315 106 58 chr13 73982649 73983272 -27889897 + L2 LINE L2 2612 3262 -51 235 330 11 0 chr13 73983288 73983376 -27889793 + MER69A DNA AcHobo 2 90 -87 2414 150 3 0 chr13 73983420 73983794 -27889375 + THE1C LTR MaLR 1 375 0 647 146 25 3 chr13 73983796 73983919 -27889250 + THE1C-int LTR MaLR 3 130 -1538 348 260 144 10 chr13 73984563 73984667 -27888502 - L2 LINE L2 -1 3312 3195 554 250 8 0 chr13 73984743 73984871 -27888298 - L2 LINE L2 -749 2565 2437 189 0 0 0 chr13 73984873 73984894 -27888275 + (T)n Simple_repeat Simple_repeat 1 21 0 197 184 0 0 chr13 73984905 73984943 -27888226 - L2 LINE L2 -935 2379 2342 2121 176 19 29 chr13 73985412 73985827 -27887342 - MSTA LTR MaLR -17 411 1 1539 283 31 25 chr13 73985924 73986529 -27886640 + L1MCa LINE L1 6 614 -5812 2259 116 3 0 chr13 73986632 73986943 -27886226 - AluSp SINE Alu -1 312 1 519 199 14 21 chr13 73986957 73987098 -27886071 + L1MCa LINE L1 2738 2877 -3549 327 130 0 0 chr13 73987099 73987153 -27886016 + (CA)n Simple_repeat Simple_repeat 1 54 0 7722 254 40 14 chr13 73987250 73988996 -27884173 + L1MCa LINE L1 2892 4591 -1835 1940 131 0 3 chr13 73988996 73989324 -27883845 + AluSx SINE Alu 1 327 0 7722 254 40 14 chr13 73989324 73989767 -27883402 + L1MCa LINE L1 4591 5021 -1405 7911 79 21 0 chr13 73989767 73990816 -27882353 - MER11C LTR ERVK 0 1071 1 7722 254 40 14 chr13 73990816 73991240 -27881929 + L1MCa LINE L1 5021 5575 -851 2183 146 41 3 chr13 73991240 73991609 -27881560 - MER57B LTR ERV1 -51 383 1 2084 94 63 0 chr13 73992214 73992500 -27880669 - AluSg SINE Alu -6 304 1 421 292 67 33 chr13 73992640 73992876 -27880293 - MIR SINE MIR -4 258 17 1034 221 22 29 chr13 73994954 73995230 -27877939 - MLT1C LTR MaLR -7 460 187 1065 221 93 51 chr13 73995245 73995698 -27877471 - MER31A LTR ERV1 0 485 1 482 234 62 7 chr13 73995698 73995842 -27877327 - MLT1C LTR MaLR -236 154 3 24 0 0 0 chr13 73996614 73996638 -27876531 + AT_rich Low_complexity Low_complexity 1 24 0 1458 188 8 16 chr13 73996841 73997149 -27876020 - L1MC2 LINE L1 -11 7761 6137 304 335 154 16 chr13 73997182 73997364 -27875805 - MIR SINE MIR -36 226 20 715 175 75 115 chr13 73997450 73997650 -27875519 - MER20 DNA MER1_type -3 216 25 2511 155 12 0 chr13 73999037 73999443 -27873726 - LOR1b LTR ERV1 0 461 51 218 32 32 0 chr13 73999444 73999475 -27873694 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 28 0 0 0 chr13 74000297 74000325 -27872844 + AT_rich Low_complexity Low_complexity 1 28 0 1257 220 35 53 chr13 74000511 74000907 -27872262 + MLT1B LTR MaLR 1 389 -1 181 281 230 7 chr13 74000911 74001050 -27872119 + MIR SINE MIR 93 262 0 4195 120 61 50 chr13 74001171 74001947 -27871222 + LTR1 LTR ERV1 2 785 0 1480 219 84 39 chr13 74002171 74002636 -27870533 - MER66B LTR ERV1 0 486 1 13225 138 27 5 chr13 74002636 74004721 -27868448 - MER66B-int LTR ERV1 -1 6675 4603 216 268 49 113 chr13 74004742 74004884 -27868285 - MIR3 SINE MIR -61 147 15 805 300 4 22 chr13 74004884 74005114 -27868055 + LOR1-int LTR ERV1 6872 7097 -1023 9383 210 22 35 chr13 74005133 74007240 -27865929 - MER66B-int LTR ERV1 -2261 4415 2336 2664 201 59 5 chr13 74007228 74008105 -27865064 - MER66B-int LTR ERV1 -4507 2169 1210 * 805 231 12 6 chr13 74008199 74008359 -27864810 - MER66B-int LTR ERV1 -3574 3102 2942 2793 202 120 45 chr13 74008432 74008855 -27864314 - MER66B-int LTR ERV1 -5562 1114 725 1758 174 122 13 chr13 74008855 74009241 -27863928 + MSTA LTR MaLR 1 428 0 2793 202 120 45 chr13 74009241 74009581 -27863588 - MER66B-int LTR ERV1 -5951 725 293 323 317 57 8 chr13 74009628 74009751 -27863418 - MER66B-int LTR ERV1 -6280 396 268 * 837 235 11 6 chr13 74009737 74009920 -27863249 - MER66B-int LTR ERV1 -6278 398 215 2102 187 57 38 chr13 74010128 74010605 -27862564 - MER66B LTR ERV1 0 486 1 23 33 0 0 chr13 74010680 74010710 -27862459 + AT_rich Low_complexity Low_complexity 1 30 0 462 254 124 38 chr13 74011736 74011921 -27861248 + MIR SINE MIR 41 241 -21 830 314 166 5 chr13 74011968 74012366 -27860803 + L2 LINE L2 2821 3282 -31 204 284 158 79 chr13 74012822 74012877 -27860292 - L2 LINE L2 -457 2857 2808 2377 92 3 0 chr13 74012877 74013183 -27859986 - AluSp SINE Alu -6 307 1 204 284 158 79 chr13 74013183 74013381 -27859788 - L2 LINE L2 -506 2808 2584 237 339 161 0 chr13 74013516 74013634 -27859535 - MIR3 SINE MIR -6 202 66 2033 234 75 27 chr13 74013659 74014177 -27858992 - MLT2B3 LTR ERVL -11 543 1 16030 203 57 11 chr13 74014177 74019612 -27853557 - ERVL-B3 LTR ERVL -7 5757 3 1348 220 106 39 chr13 74019613 74020027 -27853142 - MSTB2 LTR MaLR -15 442 1 2873 253 113 79 chr13 74020027 74021623 -27851546 - MSTB2-int LTR MaLR 0 1651 1 1355 203 141 44 chr13 74021623 74022028 -27851141 - MSTB2 LTR MaLR -13 444 1 559 237 65 59 chr13 74022880 74023217 -27849952 - L1MC5 LINE L1 -308 7653 7315 21 0 0 0 chr13 74024491 74024512 -27848657 + AT_rich Low_complexity Low_complexity 1 21 0 310 257 243 21 chr13 74024643 74024787 -27848382 - MER5B DNA MER1_type -1 177 2 24 0 0 0 chr13 74025563 74025587 -27847582 + AT_rich Low_complexity Low_complexity 1 24 0 1368 193 4 4 chr13 74025603 74025842 -27847327 + MER8 DNA MER2_type 1 239 0 226 143 54 0 chr13 74026854 74026910 -27846259 + (TA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr13 74027049 74027077 -27846092 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr13 74029373 74029400 -27843769 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 579 350 11 44 chr13 74029641 74030007 -27843162 - MLT1H LTR MaLR -32 517 164 2178 192 31 7 chr13 74030007 74030490 -27842679 + MER89 LTR ERV1 1 559 0 477 221 136 7 chr13 74030499 74030639 -27842530 - MLT1H LTR MaLR -391 158 1 288 77 0 0 chr13 74032008 74032047 -27841122 + (TG)n Simple_repeat Simple_repeat 2 40 0 273 119 0 0 chr13 74032103 74032145 -27841024 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr13 74032830 74032855 -27840314 + AT_rich Low_complexity Low_complexity 1 25 0 1075 176 0 6 chr13 74033121 74033303 -27839866 + AluJb SINE Alu 1 181 -131 33 56 0 0 chr13 74033762 74033816 -27839353 + AT_rich Low_complexity Low_complexity 1 54 0 256 205 13 39 chr13 74035309 74035387 -27837782 + MER87 LTR ERV1 430 505 -36 308 214 233 10 chr13 74035483 74035586 -27837583 + L2 LINE L2 2921 3046 -267 2497 160 5 0 chr13 74035790 74036184 -27836985 + MER57A LTR ERV1 8 403 0 1797 208 148 6 chr13 74036534 74037035 -27836134 + LTR49 LTR ERV1 1 572 -23 1844 170 42 67 chr13 74037046 74037600 -27835569 - MLT2A2 LTR ERVL 0 554 1 23 0 0 0 chr13 74037632 74037655 -27835514 + AT_rich Low_complexity Low_complexity 1 23 0 1988 224 33 36 chr13 74037846 74038384 -27834785 - MER41B LTR ERV1 0 601 100 226 281 10 52 chr13 74038403 74038499 -27834670 + MIR SINE MIR 54 145 -117 3470 233 59 13 chr13 74038955 74039971 -27833198 - Charlie1a DNA MER1_type 0 1455 392 1791 208 62 26 chr13 74039971 74040424 -27832745 + MER67C LTR ERV1 3 471 -239 1815 244 107 33 chr13 74040430 74041105 -27832064 + MER50 LTR ERV1 10 734 0 1065 165 37 41 chr13 74041105 74041230 -27831939 + MER67C LTR ERV1 468 593 -117 2251 95 0 3 chr13 74041230 74041525 -27831644 - AluSg SINE Alu -16 294 1 1065 165 37 41 chr13 74041525 74041642 -27831527 + MER67C LTR ERV1 593 709 -1 1080 264 24 9 chr13 74041655 74041985 -27831184 - Charlie1a DNA MER1_type -1079 376 42 23 33 0 0 chr13 74043132 74043162 -27830007 + AT_rich Low_complexity Low_complexity 1 30 0 843 174 100 74 chr13 74043729 74043867 -27829302 - MLT2B1 LTR ERVL -284 236 88 2204 124 3 0 chr13 74043867 74044166 -27829003 + AluSg SINE Alu 1 300 -10 843 174 100 74 chr13 74044166 74044257 -27828912 - MLT2B1 LTR ERVL -432 88 1 288 0 0 0 chr13 74044304 74044336 -27828833 + (TA)n Simple_repeat Simple_repeat 2 33 0 1738 122 4 0 chr13 74044336 74044573 -27828596 + AluSg SINE Alu 42 279 -31 495 0 0 17 chr13 74044620 74044680 -27828489 + MADE1 DNA Mariner 22 80 0 4820 217 58 14 chr13 74045092 74046282 -27826887 + L1MC3 LINE L1 6374 7615 -170 1401 195 4 4 chr13 74047480 74047737 -27825432 - AluJb SINE Alu -55 257 1 873 199 0 23 chr13 74047891 74048062 -27825107 - AluJo SINE Alu -79 233 67 16004 46 5 1 chr13 74048680 74051468 -27821701 - L1PA5 LINE L1 -8 6146 3351 226 221 88 0 chr13 74051480 74051548 -27821621 - L1MEc LINE L1 -4137 2259 2186 978 241 5 14 chr13 74051667 74051887 -27821282 + MER20 DNA MER1_type 1 218 -1 685 283 81 49 chr13 74052052 74052791 -27820378 - L1MEc LINE L1 -4402 1994 1232 1466 165 8 12 chr13 74052832 74053087 -27820082 + THE1C LTR MaLR 1 254 -121 2304 124 52 0 chr13 74053087 74053433 -27819736 + THE1B LTR MaLR 1 364 0 1589 152 17 10 chr13 74053461 74053751 -27819418 - L1PA13 LINE L1 -19 6144 5853 2280 200 26 14 chr13 74053751 74054247 -27818922 - L1PA13 LINE L1 -930 5216 4715 * 2559 186 37 4 chr13 74054237 74054722 -27818447 + L1P LINE L1 3719 4219 -1927 1384 199 20 0 chr13 74054723 74055019 -27818150 + L1P LINE L1 4429 4730 -1416 487 169 0 0 chr13 74055045 74055134 -27818035 - L1MEc LINE L1 -5233 1163 1075 26 30 0 0 chr13 74055134 74055167 -27818002 + AT_rich Low_complexity Low_complexity 1 33 0 459 318 45 55 chr13 74055407 74055715 -27817454 - L1MEc LINE L1 -5915 481 177 * 6503 8 0 0 chr13 74055714 74056443 -27816726 - L1HS LINE L1 -1 6154 5426 * 9764 24 0 0 chr13 74056441 74057613 -27815556 + L1P LINE L1 2635 3806 -2340 207 143 41 0 chr13 74057950 74057999 -27815170 + (CA)n Simple_repeat Simple_repeat 2 52 0 1123 131 16 37 chr13 74058066 74058257 -27814912 + THE1B LTR MaLR 178 364 0 307 214 225 0 chr13 74058297 74058386 -27814783 - L1MA10 LINE L1 -13 6321 6213 605 324 110 5 chr13 74058984 74059203 -27813966 + L3 LINE CR1 427 668 -909 249 98 0 0 chr13 74059832 74059873 -27813296 + (TG)n Simple_repeat Simple_repeat 1 41 0 312 260 42 0 chr13 74060745 74060841 -27812328 + CT-rich Low_complexity Low_complexity 3 102 0 211 362 117 16 chr13 74061552 74061740 -27811429 + L3 LINE CR1 1078 1284 -293 369 0 0 0 chr13 74061826 74061867 -27811302 + (TA)n Simple_repeat Simple_repeat 2 42 0 420 288 54 44 chr13 74062287 74062492 -27810677 + MIR SINE MIR 56 262 0 22 70 0 0 chr13 74062907 74062950 -27810219 + AT_rich Low_complexity Low_complexity 1 43 0 1800 143 0 7 chr13 74063871 74064168 -27809001 - AluSx SINE Alu 0 305 11 1427 192 80 3 chr13 74064912 74065224 -27807945 - MER67C LTR ERV1 -308 402 67 382 221 0 0 chr13 74065266 74065352 -27807817 - MER67D LTR ERV1 -428 86 1 306 323 10 0 chr13 74066185 74066281 -27806888 - L2 LINE L2 -2 3311 3215 3543 33 0 0 chr13 74067063 74067491 -27805678 + L1PA4 LINE L1 5728 6155 0 228 149 0 0 chr13 74067506 74067553 -27805616 + (A)n Simple_repeat Simple_repeat 1 47 0 447 322 116 4 chr13 74169430 74169672 -27703497 - HERV16 LTR ERVL -2922 2074 1806 3339 241 36 17 chr13 74170755 74172483 -27700686 + L1MB8 LINE L1 4416 6178 0 22 0 0 0 chr13 74172833 74172855 -27700314 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 74174871 74174899 -27698270 + AT_rich Low_complexity Low_complexity 1 28 0 266 232 54 27 chr13 74175248 74175360 -27697809 + MER4C LTR ERV1 2 116 -349 818 223 32 103 chr13 74175442 74175946 -27697223 + LTR34 LTR ERV1 136 872 0 24 32 0 0 chr13 74176044 74176075 -27697094 + AT_rich Low_complexity Low_complexity 1 31 0 1329 223 15 16 chr13 74176418 74176692 -27696477 - MLT2B1 LTR ERVL -17 537 169 2478 128 8 5 chr13 74176692 74177066 -27696103 - THE1C LTR MaLR 0 375 1 1329 223 15 16 chr13 74177066 74177234 -27695935 - MLT2B1 LTR ERVL -385 169 2 285 215 63 0 chr13 74178058 74178137 -27695032 + MLT1-int LTR MaLR 447 530 -841 29 70 0 0 chr13 74178137 74178194 -27694975 + AT_rich Low_complexity Low_complexity 1 57 0 25 0 0 0 chr13 74178210 74178235 -27694934 + AT_rich Low_complexity Low_complexity 1 25 0 735 107 18 0 chr13 74178994 74179106 -27694063 - THE1-int LTR MaLR -594 986 873 681 255 32 0 chr13 74179408 74179565 -27693604 + MER58A DNA MER1_type 1 162 0 386 289 96 60 chr13 74179724 74180025 -27693144 + MLT1G3 LTR MaLR 24 335 -195 2014 146 41 39 chr13 74180774 74181137 -27692032 - THE1B LTR MaLR 0 364 1 4090 95 10 3 chr13 74181137 74181717 -27691452 - THE1B-int LTR MaLR 0 1580 997 * 5208 123 6 29 chr13 74181709 74181803 -27691366 - THE1B-int LTR MaLR -737 843 748 2063 103 3 17 chr13 74181803 74182103 -27691066 - AluY SINE Alu -15 296 1 5208 123 6 29 chr13 74182103 74182871 -27690298 - THE1B-int LTR MaLR -832 748 1 1952 142 38 46 chr13 74182871 74183238 -27689931 - THE1B LTR MaLR 0 364 1 3406 69 0 7 chr13 74183350 74183801 -27689368 + LTR7 LTR ERV1 1 448 -2 16215 93 10 19 chr13 74183803 74186946 -27686223 + HERVH LTR ERV1 1 2995 -4718 883 140 7 0 chr13 74186925 74187075 -27686094 + HERVH LTR ERV1 3140 3290 -4423 * 3166 110 6 6 chr13 74187065 74187567 -27685602 + HERVH LTR ERV1 3492 3993 -3720 4001 146 9 1 chr13 74187569 74188226 -27684943 + HERVH LTR ERV1 4488 5149 -2564 1315 134 19 0 chr13 74188227 74188443 -27684726 + HERVH LTR ERV1 5600 5819 -1894 2384 79 45 13 chr13 74188443 74188821 -27684348 + HERVH LTR ERV1 7324 7713 0 3427 64 0 7 chr13 74188821 74189272 -27683897 + LTR7 LTR ERV1 1 448 -2 198 0 0 0 chr13 74189673 74189695 -27683474 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr13 74189858 74189880 -27683289 + AT_rich Low_complexity Low_complexity 1 22 0 2105 136 3 7 chr13 74191141 74191450 -27681719 - AluSx SINE Alu -4 308 1 26 0 0 0 chr13 74191507 74191533 -27681636 + AT_rich Low_complexity Low_complexity 1 26 0 697 287 5 0 chr13 74191545 74191733 -27681436 - MLT1B LTR MaLR 0 390 202 2062 172 37 49 chr13 74191797 74192228 -27680941 + MSTB LTR MaLR 1 426 0 7788 206 20 7 chr13 74192229 74193853 -27679316 + MSTB-int LTR MaLR 2 1646 -5 2430 163 39 2 chr13 74193858 74194269 -27678900 + MSTB LTR MaLR 1 426 0 443 206 147 15 chr13 74194269 74194405 -27678764 - MLT1B LTR MaLR -236 154 1 180 0 0 0 chr13 74194496 74194516 -27678653 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1488 143 65 24 chr13 74194556 74194850 -27678319 - THE1C LTR MaLR -69 306 1 9299 143 61 3 chr13 74194850 74196344 -27676825 - THE1C-int LTR MaLR 0 1580 1 1677 149 98 23 chr13 74196344 74196692 -27676477 - THE1C LTR MaLR 0 375 2 7606 179 20 15 chr13 74196696 74196963 -27676206 + L1PA13 LINE L1 3224 3488 -2658 186 43 0 0 chr13 74196963 74196986 -27676183 + (CAA)n Simple_repeat Simple_repeat 2 24 0 7606 179 20 15 chr13 74196986 74198335 -27674834 + L1PA13 LINE L1 3488 4848 -1298 2088 165 2 2 chr13 74198568 74198963 -27674206 + L1PA13 LINE L1 4856 5250 -896 2054 117 7 33 chr13 74198969 74199268 -27673901 + AluSp SINE Alu 9 299 -14 5065 114 8 27 chr13 74199273 74200124 -27673045 + L1PA13 LINE L1 5327 6161 -2 464 292 198 0 chr13 74200409 74200601 -27672568 + MIR SINE MIR 8 237 -25 423 0 0 0 chr13 74201847 74201894 -27671275 + (TG)n Simple_repeat Simple_repeat 2 48 0 560 77 13 0 chr13 74201967 74202045 -27671124 - MADE1 DNA Mariner 0 80 2 2526 57 0 0 chr13 74202060 74202360 -27670809 - AluY SINE Alu -11 300 1 953 169 0 18 chr13 74202365 74202531 -27670638 - AluSg/x SINE Alu -13 299 137 29 0 0 0 chr13 74203399 74203428 -27669741 + AT_rich Low_complexity Low_complexity 1 29 0 348 231 52 37 chr13 74203462 74203596 -27669573 + L1MC5 LINE L1 7602 7737 -224 23 68 0 0 chr13 74203823 74203867 -27669302 + AT_rich Low_complexity Low_complexity 1 44 0 2494 73 0 6 chr13 74204228 74204541 -27668628 + AluY SINE Alu 1 311 0 1544 190 3 44 chr13 74205197 74205518 -27667651 - AluJo SINE Alu -4 308 1 189 0 0 0 chr13 74205522 74205543 -27667626 + (T)n Simple_repeat Simple_repeat 1 21 0 49 52 0 0 chr13 74205646 74205723 -27667446 + AT_rich Low_complexity Low_complexity 1 77 0 294 29 0 0 chr13 74206650 74206685 -27666484 + (CA)n Simple_repeat Simple_repeat 2 36 0 222 105 0 0 chr13 74207139 74207177 -27665992 + (A)n Simple_repeat Simple_repeat 1 38 0 318 348 65 7 chr13 74207249 74207404 -27665765 + HERVL LTR ERVL 3097 3260 -2394 246 225 90 56 chr13 74207801 74207890 -27665279 - L2 LINE L2 0 3272 3181 321 330 108 62 chr13 74208020 74208558 -27664611 - L2 LINE L2 -139 3174 2614 231 326 80 14 chr13 74208565 74208703 -27664466 - L2 LINE L2 -872 2442 2296 2467 180 15 2 chr13 74208705 74209160 -27664009 - LOR1b LTR ERV1 0 461 1 1932 162 75 3 chr13 74209161 74209823 -27663346 - LOR1b-int LTR ERV1 0 8120 7332 * 3546 125 42 0 chr13 74209818 74210459 -27662710 - LOR1b-int LTR ERV1 -4914 3206 2539 1480 88 18 144 chr13 74210464 74210735 -27662434 - LOR1b-int LTR ERV1 -6221 1899 1678 2267 79 3 22 chr13 74210735 74211050 -27662119 - AluSg SINE Alu -1 309 1 1480 88 18 144 chr13 74211050 74211118 -27662051 - LOR1b-int LTR ERV1 -6442 1678 1603 3726 132 22 12 chr13 74211124 74211766 -27661403 - LOR1b-int LTR ERV1 -5594 2526 1879 829 142 19 0 chr13 74211766 74211921 -27661248 - LOR1b-int LTR ERV1 -5436 2684 2527 * 10484 145 43 15 chr13 74211912 74213757 -27659412 - LOR1b-int LTR ERV1 -6223 1897 1 2319 202 13 2 chr13 74213757 74214213 -27658956 - LOR1b LTR ERV1 0 461 1 1821 186 68 157 chr13 74214302 74215078 -27658091 - LTR8A LTR ERV1 -20 707 1 2198 308 58 45 chr13 74215209 74215984 -27657185 + LTR48 LTR ERV1 3 787 0 969 347 110 7 chr13 74216096 74216698 -27656471 + L2 LINE L2 2393 3057 -256 1350 249 36 41 chr13 74216722 74217188 -27655981 + MLT1D LTR MaLR 40 503 -2 186 233 155 35 chr13 74217191 74217307 -27655862 + L2 LINE L2 3055 3184 -129 599 136 0 48 chr13 74217310 74217413 -27655756 - AluJb SINE Alu -12 300 203 1157 158 44 0 chr13 74217545 74217773 -27655396 - L1MA4 LINE L1 -7 6293 6056 350 330 35 20 chr13 74218112 74218312 -27654857 + L2 LINE L2 2158 2360 -954 280 221 29 29 chr13 74219213 74219281 -27653888 - MIR SINE MIR 0 262 195 21 0 0 0 chr13 74219453 74219474 -27653695 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 74219577 74219607 -27653562 + AT_rich Low_complexity Low_complexity 1 30 0 265 306 130 31 chr13 74220309 74220662 -27652507 + L1MCc LINE L1 51 438 -5985 1099 267 115 32 chr13 74221091 74221923 -27651246 + L1MCc LINE L1 987 1906 -4889 566 280 19 10 chr13 74222127 74222334 -27650835 + L1MCc LINE L1 2324 2532 -4590 1578 168 20 27 chr13 74222402 74222700 -27650469 - AluJo SINE Alu -14 298 3 958 260 100 27 chr13 74225017 74225428 -27647741 + HsTC2 DNA Tc2 1281 1897 -1 2267 71 0 36 chr13 74226729 74227038 -27646131 - AluY SINE Alu -13 298 1 608 117 0 0 chr13 74227649 74227743 -27645426 - AluSg/x SINE Alu 0 312 219 24 0 0 0 chr13 74227986 74228010 -27645159 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr13 74228208 74228250 -27644919 + AT_rich Low_complexity Low_complexity 1 42 0 532 328 99 45 chr13 74228355 74228438 -27644731 - L1MC/D LINE L1 -2044 5764 5687 1982 182 43 21 chr13 74228438 74228861 -27644308 + MSTB1 LTR MaLR 1 432 0 532 328 99 45 chr13 74228861 74228970 -27644199 - L1MC/D LINE L1 -2121 5687 5585 1638 192 49 72 chr13 74228970 74229398 -27643771 - MER47B DNA MER2_type 0 418 1 532 328 99 45 chr13 74229398 74229689 -27643480 - L1MC/D LINE L1 -2223 5585 5254 713 283 38 55 chr13 74230045 74230445 -27642724 - L1ME LINE L1 -481 5689 5297 23 33 0 0 chr13 74230446 74230476 -27642693 + AT_rich Low_complexity Low_complexity 1 30 0 241 256 48 0 chr13 74230484 74230609 -27642560 + (TA)n Simple_repeat Simple_repeat 2 132 0 21 57 0 0 chr13 74232683 74232718 -27640451 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr13 74234452 74234476 -27638693 + (TG)n Simple_repeat Simple_repeat 1 24 0 35 54 0 0 chr13 74234771 74234827 -27638342 + AT_rich Low_complexity Low_complexity 1 56 0 234 279 75 0 chr13 74234834 74234912 -27638257 - MIR SINE MIR -107 101 16 352 329 42 30 chr13 74234972 74235139 -27638030 + MLT1J LTR MaLR 3 171 -340 2128 77 43 0 chr13 74235177 74235477 -27637692 - L1PA10 LINE L1 -1 6167 5855 288 0 0 0 chr13 74235480 74235512 -27637657 + (TA)n Simple_repeat Simple_repeat 2 33 0 1575 173 0 0 chr13 74235512 74235772 -27637397 - AluSx SINE Alu -8 304 45 2070 112 17 0 chr13 74235920 74236214 -27636955 - AluSx SINE Alu -13 299 1 1551 213 35 61 chr13 74236261 74236656 -27636513 + MLT1B LTR MaLR 1 385 -5 3573 128 8 2 chr13 74236693 74237217 -27635952 - MER1A DNA MER1_type 0 527 1 34 0 0 0 chr13 74237353 74237387 -27635782 + AT_rich Low_complexity Low_complexity 1 34 0 26 50 0 0 chr13 74238341 74238381 -27634788 + AT_rich Low_complexity Low_complexity 1 40 0 1687 187 3 3 chr13 74238714 74239019 -27634150 + AluJo SINE Alu 7 311 -1 5457 176 7 12 chr13 74239020 74240034 -27633135 + L1MC1 LINE L1 5318 6326 -7 1716 196 78 24 chr13 74240058 74240431 -27632738 + MLT1C LTR MaLR 27 419 -48 1759 183 107 60 chr13 74240431 74240917 -27632252 + MER67D LTR ERV1 1 509 -5 229 244 0 0 chr13 74240914 74240959 -27632210 + MLT1C LTR MaLR 422 466 -1 * 270 261 0 0 chr13 74241236 74241305 -27631864 + (TA)n Simple_repeat Simple_repeat 1 69 0 188 398 43 67 chr13 74241527 74241899 -27631270 + L2 LINE L2 2825 3187 -85 640 323 71 7 chr13 74242577 74242887 -27630282 + L2 LINE L2 2585 2914 -400 606 123 41 0 chr13 74243205 74243375 -27629794 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 35 0 0 0 chr13 74243375 74243410 -27629759 + AT_rich Low_complexity Low_complexity 1 35 0 473 302 79 5 chr13 74243429 74243631 -27629538 - MIR SINE MIR -1 261 45 214 171 24 0 chr13 74244528 74244569 -27628600 + GA-rich Low_complexity Low_complexity 1 42 0 2048 120 0 13 chr13 74244973 74245273 -27627896 - AluSg SINE Alu -8 302 7 855 133 0 15 chr13 74246007 74246142 -27627027 - FLAM_C SINE Alu 0 133 1 421 277 154 32 chr13 74246371 74246591 -27626578 - MIR SINE MIR -10 252 6 21 36 0 0 chr13 74246718 74246746 -27626423 + AT_rich Low_complexity Low_complexity 1 28 0 579 262 112 33 chr13 74246978 74247192 -27625977 - MIR SINE MIR -1 261 31 2053 219 129 43 chr13 74247640 74248401 -27624768 + LTR1B LTR ERV1 1 826 0 25 31 0 0 chr13 74248581 74248613 -27624556 + AT_rich Low_complexity Low_complexity 1 32 0 1862 121 11 14 chr13 74248726 74249037 -27624132 + AluSc SINE Alu 1 310 0 383 167 0 22 chr13 74249283 74249373 -27623796 - L1MA8 LINE L1 -2 6289 6202 1089 140 91 0 chr13 74249373 74249594 -27623575 + L1MA8 LINE L1 5982 6222 -69 1893 139 7 0 chr13 74250048 74250336 -27622833 - AluSx SINE Alu -22 290 1 183 267 0 0 chr13 74250337 74250382 -27622787 + L3 LINE CR1 1529 1573 -4 243 364 61 0 chr13 74252547 74252646 -27620523 - MIR SINE MIR -138 124 20 23 0 0 0 chr13 74252646 74252669 -27620500 + AT_rich Low_complexity Low_complexity 1 23 0 1207 230 60 49 chr13 74252894 74253264 -27619905 - MLT1A2 LTR MaLR 0 374 1 1499 104 133 8 chr13 74253475 74253724 -27619445 + AluSg1 SINE Alu 18 297 -12 192 125 0 0 chr13 74253751 74253783 -27619386 + (TAAAAA)n Simple_repeat Simple_repeat 2 33 0 1983 121 0 29 chr13 74254249 74254563 -27618606 + AluY SINE Alu 1 305 -6 250 186 68 17 chr13 74254727 74254786 -27618383 + L2 LINE L2 3179 3240 -73 1868 101 46 62 chr13 74254816 74254948 -27618221 + AluSg SINE Alu 1 134 -176 2027 127 3 3 chr13 74254948 74255247 -27617922 + AluSp SINE Alu 1 299 -14 1868 101 46 62 chr13 74255247 74255421 -27617748 + AluSg SINE Alu 134 302 -8 272 276 113 49 chr13 74255496 74255656 -27617513 - MIR SINE MIR -86 176 9 1539 188 13 29 chr13 74255867 74256181 -27616988 + AluJo SINE Alu 1 309 -3 7575 27 0 0 chr13 74256326 74257856 -27615313 + L1PA3 LINE L1 4633 6162 0 516 203 140 68 chr13 74259872 74259909 -27613260 - MLT2B1 LTR ERVL 0 520 487 267 31 0 0 chr13 74259909 74259941 -27613228 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 516 203 140 68 chr13 74259941 74260115 -27613054 - MLT2B1 LTR ERVL -33 487 316 2475 260 53 7 chr13 74260148 74260821 -27612348 - ERVL-B1 LTR ERVL -5059 705 2 271 182 15 15 chr13 74260822 74260888 -27612281 - MLT2B1 LTR ERVL 0 520 455 1433 258 69 42 chr13 74260938 74261419 -27611750 - MLT2B1 LTR ERVL -26 494 1 1296 291 46 57 chr13 74261490 74262037 -27611132 - MLT1E LTR MaLR -2 591 51 261 338 65 65 chr13 74262372 74262647 -27610522 - L2 LINE L2 -556 2758 2484 399 41 0 0 chr13 74262838 74262887 -27610282 + (TG)n Simple_repeat Simple_repeat 1 49 0 277 105 0 35 chr13 74263041 74263098 -27610071 + (TCCC)n Simple_repeat Simple_repeat 2 56 0 830 175 6 0 chr13 74263100 74263277 -27609892 + CT-rich Low_complexity Low_complexity 1 178 0 818 229 18 0 chr13 74263318 74263484 -27609685 - FRAM SINE Alu -8 168 1 2883 6 0 0 chr13 74263884 74264201 -27608968 + AluYb8 SINE Alu 1 317 -1 265 196 22 0 chr13 74264455 74264501 -27608668 + MER45A DNA AcHobo 4 50 -128 239 233 44 44 chr13 74264537 74264627 -27608542 - L1MC4 LINE L1 -1339 6703 6614 3183 187 20 10 chr13 74264648 74266135 -27607034 - L1MA8 LINE L1 -6 6285 4695 700 204 0 17 chr13 74266174 74266350 -27606819 + L1 LINE L1 4204 4376 -1770 3568 116 39 29 chr13 74266369 74267322 -27605847 - MER11A LTR ERVK -14 1057 1 1225 172 73 0 chr13 74267322 74267595 -27605574 + L1 LINE L1 4374 4666 -1480 287 250 24 24 chr13 74267601 74267685 -27605484 + MER45A DNA AcHobo 94 177 -1 2870 200 17 29 chr13 74267887 74268536 -27604633 + MER39B LTR ERV1 4 542 0 26 30 0 0 chr13 74269562 74269595 -27603574 + AT_rich Low_complexity Low_complexity 1 33 0 471 247 58 77 chr13 74269932 74270191 -27602978 - L1ME3A LINE L1 -190 5980 5727 1980 86 0 36 chr13 74270227 74270507 -27602662 - AluY SINE Alu -2 309 40 194 0 39 0 chr13 74270513 74270539 -27602630 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr13 74272239 74272265 -27600904 + (TG)n Simple_repeat Simple_repeat 1 26 0 244 294 32 8 chr13 74272269 74272395 -27600774 + (TATATG)n Simple_repeat Simple_repeat 4 132 0 1788 186 102 123 chr13 74272638 74273429 -27599740 - LTR1B LTR ERV1 0 826 52 21 0 0 0 chr13 74274203 74274224 -27598945 + AT_rich Low_complexity Low_complexity 1 21 0 4977 247 59 46 chr13 74275651 74277230 -27595939 - LTR31-int LTR ERV1 -2891 3910 181 339 190 38 0 chr13 74277501 74277640 -27595529 + CT-rich Low_complexity Low_complexity 1 144 0 26 0 0 0 chr13 74281823 74281849 -27591320 + AT_rich Low_complexity Low_complexity 1 26 0 235 250 36 12 chr13 74282196 74282242 -27590927 + (TA)n Simple_repeat Simple_repeat 2 52 -35 1874 116 0 0 chr13 74282242 74282500 -27590669 - AluSq SINE Alu -17 296 39 235 250 36 12 chr13 74282500 74282537 -27590632 + (TA)n Simple_repeat Simple_repeat 52 87 0 1011 107 54 6 chr13 74282676 74282844 -27590325 - L1PA11 LINE L1 0 6174 5999 23 54 0 0 chr13 74283465 74283502 -27589667 + AT_rich Low_complexity Low_complexity 1 37 0 2231 74 3 0 chr13 74285370 74285678 -27587491 + AluSp SINE Alu 1 309 0 2920 167 2 2 chr13 74285859 74286356 -27586813 + LOR1a LTR ERV1 1 497 0 682 299 23 9 chr13 74287282 74287496 -27585673 + MLT1E LTR MaLR 3 219 -374 402 196 97 44 chr13 74287499 74287612 -27585557 + MLT1A2 LTR MaLR 1 101 -289 781 284 0 0 chr13 74287614 74287804 -27585365 + MLT1A1-int LTR MaLR 954 1143 -228 11953 117 9 18 chr13 74287911 74289881 -27583288 - HERVH LTR ERV1 -5445 2268 437 2062 241 80 50 chr13 74290145 74291607 -27581562 + L1M4 LINE L1 459 1928 -4718 2958 178 73 5 chr13 74291607 74292185 -27580984 - LTR31 LTR ERV1 -2 617 1 204 158 0 0 chr13 74293655 74293693 -27579476 + (CATAT)n Simple_repeat Simple_repeat 4 41 0 911 269 46 76 chr13 74293703 74294178 -27578991 - MLT1C LTR MaLR -1 466 6 231 173 0 0 chr13 74294182 74294234 -27578935 + (CATAT)n Simple_repeat Simple_repeat 4 55 0 839 269 30 0 chr13 74294325 74294526 -27578643 - MER20 DNA MER1_type -9 210 4 1405 186 20 111 chr13 74295280 74295678 -27577491 + MLT1A1 LTR MaLR 1 362 -3 1090 251 125 25 chr13 74296018 74296345 -27576824 - MLT1A2 LTR MaLR -11 363 4 1362 326 92 5 chr13 74296444 74297029 -27576140 + L2 LINE L2 2123 2758 -556 327 352 28 16 chr13 74297115 74297297 -27575872 - L1MEd LINE L1 -5490 629 446 21 0 0 0 chr13 74298302 74298323 -27574846 + AT_rich Low_complexity Low_complexity 1 21 0 488 254 29 73 chr13 74299504 74299709 -27573460 + MIR SINE MIR 67 262 0 1458 247 55 8 chr13 74300240 74300605 -27572564 - MSTC LTR MaLR -44 384 3 4525 266 65 50 chr13 74300607 74302235 -27570934 - MSTC-int LTR MaLR 0 1651 1 2362 181 24 2 chr13 74302235 74302645 -27570524 - MSTC LTR MaLR 0 428 10 22 56 0 0 chr13 74302816 74302852 -27570317 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 74303088 74303124 -27570045 + AT_rich Low_complexity Low_complexity 1 36 0 1658 118 37 4 chr13 74303387 74303658 -27569511 - L1PB1 LINE L1 -2 6149 5870 303 176 0 0 chr13 74303671 74303722 -27569447 - L1MD1 LINE L1 -142 6100 6050 21 57 0 0 chr13 74303742 74303777 -27569392 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr13 74304417 74304454 -27568715 + AT_rich Low_complexity Low_complexity 1 37 0 1497 151 25 16 chr13 74304489 74304734 -27568435 + MER1B DNA MER1_type 133 339 0 21 0 0 0 chr13 74305419 74305440 -27567729 + AT_rich Low_complexity Low_complexity 1 21 0 2215 117 0 7 chr13 74305541 74305848 -27567321 + AluSx SINE Alu 2 306 -6 1475 325 20 19 chr13 74307371 74308070 -27565099 + L1MCb LINE L1 4 703 -5342 1465 191 26 16 chr13 74308896 74309199 -27563970 + AluJo SINE Alu 7 312 0 22 0 0 0 chr13 74309571 74309593 -27563576 + AT_rich Low_complexity Low_complexity 1 22 0 352 216 0 120 chr13 74309633 74309758 -27563411 + L2 LINE L2 3192 3301 -12 1065 168 0 5 chr13 74311339 74311524 -27561645 - MSTA LTR MaLR 0 428 245 719 133 8 0 chr13 74311827 74311947 -27561222 + Cheshire DNA MER1_type 1996 2116 -304 216 0 0 0 chr13 74313118 74313142 -27560027 + (TA)n Simple_repeat Simple_repeat 2 25 0 1752 87 4 36 chr13 74313142 74313395 -27559774 - AluY SINE Alu -27 284 40 194 0 39 0 chr13 74313401 74313427 -27559742 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chr13 74315131 74315157 -27558012 + (TG)n Simple_repeat Simple_repeat 1 26 0 244 294 32 8 chr13 74315161 74315287 -27557882 + (TATATG)n Simple_repeat Simple_repeat 4 132 0 2118 185 96 116 chr13 74315530 74316373 -27556796 - LTR1B LTR ERV1 0 826 1 187 387 99 0 chr13 74316424 74316566 -27556603 + MIR SINE MIR 92 247 -15 428 302 24 8 chr13 74316947 74317073 -27556096 + MIR SINE MIR 118 245 -17 516 332 108 12 chr13 74317668 74317927 -27555242 + L2 LINE L2 2204 2487 -827 183 207 0 52 chr13 74318037 74318095 -27555074 + L3 LINE CR1 618 672 -905 597 302 26 17 chr13 74318662 74318894 -27554275 + LTR37B LTR ERV1 39 272 -196 27 0 0 0 chr13 74320544 74320571 -27552598 + AT_rich Low_complexity Low_complexity 1 27 0 1429 140 0 44 chr13 74320733 74320992 -27552177 + AluSg/x SINE Alu 65 313 0 327 49 0 0 chr13 74321336 74321377 -27551792 + (TC)n Simple_repeat Simple_repeat 2 42 0 1386 211 0 18 chr13 74321381 74321660 -27551509 - AluJo SINE Alu -30 282 9 186 289 0 0 chr13 74321932 74321977 -27551192 + MIR SINE MIR 203 247 -15 246 307 27 42 chr13 74322485 74322611 -27550558 + MIR SINE MIR 39 168 -69 2590 7 0 0 chr13 74323552 74323834 -27549335 - AluY SINE Alu -11 300 19 24 0 0 0 chr13 74323892 74323916 -27549253 + AT_rich Low_complexity Low_complexity 1 24 0 1301 256 16 19 chr13 74323916 74324279 -27548890 + MLT1A1 LTR MaLR 4 365 0 369 294 76 40 chr13 74324301 74325064 -27548105 - L1MEc LINE L1 -4461 1754 1024 21 0 0 0 chr13 74325965 74325986 -27547183 + AT_rich Low_complexity Low_complexity 1 21 0 27 96 0 0 chr13 74327361 74327444 -27545725 + AT_rich Low_complexity Low_complexity 1 83 0 180 0 0 0 chr13 74327685 74327705 -27545464 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1337 280 113 48 chr13 74327818 74330204 -27542965 + L1MD2 LINE L1 333 2854 -3226 396 311 53 35 chr13 74330218 74330559 -27542610 + L1MD2 LINE L1 3592 3938 -2142 541 309 123 0 chr13 74330610 74330885 -27542284 + L1MD2 LINE L1 4384 4716 -1364 2180 121 7 0 chr13 74330885 74331182 -27541987 + AluSc SINE Alu 1 299 -10 541 309 123 0 chr13 74331182 74331272 -27541897 + L1MD2 LINE L1 4716 4794 -1286 3222 94 34 8 chr13 74331275 74331753 -27541416 - L1PA13 LINE L1 -1 6162 5673 2322 134 14 0 chr13 74331756 74332121 -27541048 + L1PA13 LINE L1 5306 5675 -493 291 296 28 21 chr13 74332312 74332454 -27540715 + L1MD2 LINE L1 5020 5162 -918 1922 290 45 11 chr13 74332498 74333232 -27539937 + L1MD2 LINE L1 5470 6228 -65 1211 240 53 18 chr13 74333233 74333575 -27539594 + L1ME1 LINE L1 5809 6162 -4 27 62 0 0 chr13 74333698 74333746 -27539423 + AT_rich Low_complexity Low_complexity 1 48 0 1818 151 17 10 chr13 74334140 74334432 -27538737 - AluSx SINE Alu -18 294 1 348 332 149 48 chr13 74334452 74334889 -27538280 - LTR16C LTR ERVL -10 481 1 617 343 92 35 chr13 74335405 74335694 -27537475 - ERVL LTR ERVL -650 4835 4564 1886 187 40 74 chr13 74335694 74336197 -27536972 + MER66B LTR ERV1 1 486 0 617 343 92 35 chr13 74336197 74337203 -27535966 - ERVL LTR ERVL -921 4564 3567 273 366 75 24 chr13 74337595 74337849 -27535320 - ERVL LTR ERVL -2005 2991 2725 207 0 0 0 chr13 74338265 74338288 -27534881 + (TA)n Simple_repeat Simple_repeat 1 23 0 532 322 116 4 chr13 74338338 74338580 -27534589 - ERVL LTR ERVL -2922 2074 1806 1327 195 109 0 chr13 74339244 74339389 -27533780 - AluJb SINE Alu -27 285 157 450 0 0 0 chr13 74339389 74339439 -27533730 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 1327 195 109 0 chr13 74339439 74339550 -27533619 - AluJb SINE Alu -155 157 1 576 321 52 55 chr13 74339812 74340233 -27532936 - LTR16C LTR ERVL 0 491 72 26 30 0 0 chr13 74340823 74340856 -27532313 + AT_rich Low_complexity Low_complexity 1 33 0 1774 188 298 9 chr13 74342098 74342642 -27530527 + L1PA5 LINE L1 4697 5397 -749 2083 78 2 36 chr13 74342645 74343118 -27530051 + L1PA5 LINE L1 5601 6154 0 2114 176 0 3 chr13 74343118 74343485 -27529684 + L1PA15 LINE L1 5797 6165 0 2181 108 0 3 chr13 74343922 74344219 -27528950 + AluSx SINE Alu 1 296 -16 1694 292 31 26 chr13 74345055 74345600 -27527569 - MLT2F LTR ERVL -113 550 3 1459 285 43 17 chr13 74345874 74346344 -27526825 + L1M4b LINE L1 36 517 -6342 380 248 9 9 chr13 74346441 74346546 -27526623 + L1M4b LINE L1 915 1019 -5840 * 6408 188 68 24 chr13 74346545 74347994 -27525175 - L1P LINE L1 -1201 4945 3433 319 179 195 2 chr13 74347993 74348110 -27525059 + L1M4b LINE L1 1563 1697 -5158 * 480 195 34 47 chr13 74348110 74348259 -27524910 + LTR49-int LTR ERV1 1297 1443 -3493 388 283 0 29 chr13 74348446 74348619 -27524550 + LTR49-int LTR ERV1 1744 1911 -3025 1453 264 51 28 chr13 74349180 74349753 -27523416 + LTR49-int LTR ERV1 2481 3066 -1870 5924 120 25 52 chr13 74350097 74350701 -27522468 - L1MA2 LINE L1 -10 7713 7149 1663 170 0 42 chr13 74350701 74350990 -27522179 + AluSx SINE Alu 13 289 -23 5924 120 25 52 chr13 74350990 74351454 -27521715 - L1MA2 LINE L1 -574 7149 6674 434 163 31 0 chr13 74351469 74351567 -27521602 - L1MA2 LINE L1 -844 6721 6621 * 15792 174 26 56 chr13 74351562 74354833 -27518336 - L1MA2 LINE L1 -4380 3185 15 22 35 0 0 chr13 74354980 74355009 -27518160 + AT_rich Low_complexity Low_complexity 1 29 0 6341 198 28 23 chr13 74355009 74357407 -27515762 - L1PB4 LINE L1 -2 6154 3754 524 163 10 10 chr13 74357407 74357505 -27515664 + MER4A LTR ERV1 1 98 -566 * 1371 137 286 22 chr13 74357501 74357823 -27515346 + MER4A LTR ERV1 257 663 -1 1032 188 10 10 chr13 74357824 74358032 -27515137 - L1PB4 LINE L1 -2389 3757 3550 268 105 0 0 chr13 74358045 74358083 -27515086 + LTR49-int LTR ERV1 4421 4458 -1873 1300 240 35 48 chr13 74358293 74358748 -27514421 + LTR49-int LTR ERV1 3302 3750 -1186 23 33 0 0 chr13 74359219 74359249 -27513920 + AT_rich Low_complexity Low_complexity 1 30 0 688 221 17 11 chr13 74359485 74359666 -27513503 + L1M4 LINE L1 2956 3137 -3009 1533 294 49 24 chr13 74359679 74360213 -27512956 + MER92C LTR ERV1 6 552 -2 2699 254 57 26 chr13 74360215 74361307 -27511862 + L1M4 LINE L1 3156 4281 -1865 807 234 84 5 chr13 74361306 74361520 -27511649 + L1MB8 LINE L1 5941 6171 -7 * 30 69 0 0 chr13 74361670 74361728 -27511441 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr13 74362011 74362032 -27511137 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr13 74362144 74362171 -27510998 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr13 74363300 74363333 -27509836 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 74363654 74363676 -27509493 + AT_rich Low_complexity Low_complexity 1 22 0 4788 123 31 25 chr13 74364221 74365035 -27508134 + L1PA13 LINE L1 5322 6140 -23 239 137 0 20 chr13 74365221 74365272 -27507897 + (TA)n Simple_repeat Simple_repeat 2 51 0 2173 116 0 3 chr13 74365677 74365971 -27507198 + AluSx SINE Alu 5 297 -15 316 284 0 0 chr13 74366107 74366202 -27506967 - L1MA10 LINE L1 0 6334 6240 24 53 0 0 chr13 74366360 74366398 -27506771 + AT_rich Low_complexity Low_complexity 1 38 0 573 365 52 44 chr13 74366493 74366950 -27506219 + LTR16C LTR ERVL 1 461 -30 737 274 80 39 chr13 74368045 74368457 -27504712 - L1ME3A LINE L1 0 6170 5742 254 192 19 0 chr13 74368582 74368634 -27504535 - L1ME3A LINE L1 -450 5720 5668 380 258 138 14 chr13 74368687 74368813 -27504356 - L1M1 LINE L1 -757 5389 5347 1479 96 0 0 chr13 74368813 74369000 -27504169 - AluSc SINE Alu -122 187 1 380 258 138 14 chr13 74369000 74369172 -27503997 - L1M1 LINE L1 -799 5347 5198 * 2728 195 65 19 chr13 74369170 74369638 -27503531 + L1MA10 LINE L1 5673 6179 -155 198 0 0 0 chr13 74369638 74369660 -27503509 + (CA)n Simple_repeat Simple_repeat 1 22 0 2728 195 65 19 chr13 74369660 74369817 -27503352 + L1MA10 LINE L1 6179 6327 -7 30 0 0 0 chr13 74369967 74369997 -27503172 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr13 74370051 74370100 -27503069 + AT_rich Low_complexity Low_complexity 1 49 0 2840 105 8 93 chr13 74370285 74370800 -27502369 - MER9 LTR ERVK 0 511 41 27 29 0 0 chr13 74370855 74370889 -27502280 + AT_rich Low_complexity Low_complexity 1 34 0 2192 176 47 2 chr13 74370889 74371297 -27501872 + MSTB LTR MaLR 1 426 0 730 222 80 55 chr13 74371325 74371690 -27501479 - L1MEc LINE L1 -3111 3315 2942 184 186 34 0 chr13 74371718 74371777 -27501392 + (TA)n Simple_repeat Simple_repeat 2 62 0 242 304 14 61 chr13 74371931 74372031 -27501138 - L1MEc LINE L1 -4601 1825 1733 2112 112 7 3 chr13 74372031 74372334 -27500835 - AluY SINE Alu -7 304 1 242 304 14 61 chr13 74372334 74372381 -27500788 - L1MEc LINE L1 -4693 1733 1685 353 272 83 66 chr13 74372385 74372660 -27500509 - L1MEc LINE L1 -4892 1584 1269 1658 210 76 25 chr13 74372712 74373107 -27500062 + MLT2C2 LTR ERVL 2 416 -48 255 103 0 0 chr13 74373176 74373215 -27499954 + (CA)n Simple_repeat Simple_repeat 2 40 0 283 119 0 0 chr13 74373254 74373296 -27499873 + MLT2C2 LTR ERVL 474 515 0 301 262 87 32 chr13 74373298 74373424 -27499745 - L1MEc LINE L1 -5038 1378 1246 37 52 0 0 chr13 74376654 74376712 -27496457 + AT_rich Low_complexity Low_complexity 1 58 0 215 172 62 0 chr13 74376765 74376829 -27496340 + (TA)n Simple_repeat Simple_repeat 2 69 0 389 293 71 20 chr13 74376841 74377039 -27496130 - MLT1J LTR MaLR -24 487 280 226 125 62 0 chr13 74377075 74377155 -27496014 + (TA)n Simple_repeat Simple_repeat 2 86 0 36 77 0 0 chr13 74377248 74377326 -27495843 + AT_rich Low_complexity Low_complexity 1 78 0 320 243 27 0 chr13 74377326 74377400 -27495769 - MLT1J LTR MaLR -336 175 100 21 36 0 0 chr13 74377784 74377812 -27495357 + AT_rich Low_complexity Low_complexity 1 28 0 210 37 0 0 chr13 74378804 74378831 -27494338 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3799 210 31 50 chr13 74378886 74379304 -27493865 + L1MC2 LINE L1 5406 5830 -514 2015 161 27 6 chr13 74379304 74379668 -27493501 + L1MA6 LINE L1 5920 6293 -7 3799 210 31 50 chr13 74379668 74379940 -27493229 + L1MC2 LINE L1 5830 6076 -268 2273 100 0 0 chr13 74379940 74380241 -27492928 + AluSx SINE Alu 1 301 -11 3799 210 31 50 chr13 74380241 74380497 -27492672 + L1MC2 LINE L1 6076 6335 -9 220 267 153 23 chr13 74380976 74381152 -27492017 - L2 LINE L2 -2 3311 3113 258 105 0 0 chr13 74381833 74381871 -27491298 + (CA)n Simple_repeat Simple_repeat 1 38 0 22 88 0 0 chr13 74382367 74382424 -27490745 + AT_rich Low_complexity Low_complexity 1 57 0 447 100 0 0 chr13 74383408 74383478 -27489691 + (CA)n Simple_repeat Simple_repeat 1 70 0 1604 213 127 0 chr13 74383666 74384075 -27489094 - LTR53 LTR ERVL -52 467 7 501 347 94 25 chr13 74384090 74384687 -27488482 - L1M4 LINE L1 -757 5389 4752 5035 162 62 7 chr13 74384726 74385198 -27487971 - L1MA4 LINE L1 -6 7713 7269 216 0 0 0 chr13 74385198 74385222 -27487947 + (TA)n Simple_repeat Simple_repeat 2 25 0 5035 162 62 7 chr13 74385222 74385798 -27487371 - L1MA4 LINE L1 -450 7269 6610 * 6515 230 44 39 chr13 74385794 74388009 -27485160 - L1MA4 LINE L1 -2064 5501 3281 3665 192 48 44 chr13 74388160 74388833 -27484336 - L1M1 LINE L1 -4045 3520 2839 186 43 0 0 chr13 74388833 74388856 -27484313 + (TG)n Simple_repeat Simple_repeat 1 23 0 3665 192 48 44 chr13 74388856 74389192 -27483977 - L1M1 LINE L1 -4726 2839 2506 3148 244 68 14 chr13 74389209 74390017 -27483152 - L1M1 LINE L1 -6702 863 12 1114 215 33 39 chr13 74390188 74390523 -27482646 - L1MA7 LINE L1 0 6291 5959 27 0 0 0 chr13 74390832 74390859 -27482310 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr13 74391175 74391207 -27481962 + AT_rich Low_complexity Low_complexity 1 32 0 546 253 95 0 chr13 74391571 74391729 -27481440 - L1M1 LINE L1 -7383 182 10 38 51 0 0 chr13 74391988 74392047 -27481122 + AT_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr13 74392968 74392993 -27480176 + AT_rich Low_complexity Low_complexity 1 25 0 181 386 0 14 chr13 74393459 74393529 -27479640 + L2 LINE L2 2982 3050 -222 35 41 0 0 chr13 74393751 74393800 -27479369 + AT_rich Low_complexity Low_complexity 1 49 0 2777 0 0 0 chr13 74393909 74394210 -27478959 + AluYa5 SINE Alu 1 301 -10 25 31 0 0 chr13 74394650 74394682 -27478487 + AT_rich Low_complexity Low_complexity 1 32 0 1926 91 0 7 chr13 74395490 74395766 -27477403 - AluY SINE Alu -1 310 37 2330 73 0 20 chr13 74396221 74396523 -27476646 + AluSp SINE Alu 1 296 -17 875 133 14 12 chr13 74396979 74397485 -27475684 + CT-rich Low_complexity Low_complexity 1 507 0 654 151 22 28 chr13 74397499 74397678 -27475491 + CT-rich Low_complexity Low_complexity 3 180 0 31 26 0 0 chr13 74398040 74398078 -27475091 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr13 74398489 74398520 -27474649 + AT_rich Low_complexity Low_complexity 1 31 0 262 312 21 0 chr13 74399009 74399150 -27474019 + (TA)n Simple_repeat Simple_repeat 1 144 0 989 198 122 63 chr13 74399286 74399746 -27473423 + pTR5 LTR ERV1 741 1227 -1211 2899 119 258 7 chr13 74399869 74400535 -27472634 + pTR5 LTR ERV1 1206 2468 0 807 10 0 20 chr13 74400853 74400952 -27472217 + L1PA4 LINE L1 6053 6149 -6 833 237 58 0 chr13 74401025 74401232 -27471937 + MER58A DNA MER1_type 2 220 -4 663 302 81 10 chr13 74401307 74401605 -27471564 - MLT1J1 LTR MaLR -127 319 1 358 385 59 35 chr13 74401672 74402095 -27471074 + L2 LINE L2 1165 1597 -1717 2347 56 10 13 chr13 74402109 74402411 -27470758 + AluY SINE Alu 8 308 -3 21 0 0 0 chr13 74402470 74402491 -27470678 + AT_rich Low_complexity Low_complexity 1 21 0 191 320 70 55 chr13 74403273 74403401 -27469768 + L2 LINE L2 2914 3043 -229 661 188 130 0 chr13 74403446 74403600 -27469569 - L1PA12 LINE L1 -7191 390 217 405 240 73 0 chr13 74403629 74403725 -27469444 + L1PA12 LINE L1 453 555 -7026 324 303 0 87 chr13 74403735 74403920 -27469249 + L2 LINE L2 3113 3281 -32 2089 259 47 29 chr13 74404416 74404623 -27468546 - L1MD2 LINE L1 -25 6334 6132 216 0 0 0 chr13 74404623 74404647 -27468522 + (CATAA)n Simple_repeat Simple_repeat 3 26 0 2089 259 47 29 chr13 74404647 74405156 -27468013 - L1MD2 LINE L1 -227 6132 5605 1538 211 116 13 chr13 74405297 74405677 -27467492 + L1PA12 LINE L1 211 629 -6952 709 182 124 27 chr13 74405714 74405987 -27467182 - LTR18A LTR ERVL -224 390 1 4556 111 18 5 chr13 74405987 74406656 -27466513 + L1PA11 LINE L1 5494 6171 -3 451 62 0 16 chr13 74406928 74406992 -27466177 - Alu SINE Alu -15 294 232 324 0 0 0 chr13 74407599 74407635 -27465534 + (TG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr13 74407789 74407811 -27465358 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 74408355 74408376 -27464793 + AT_rich Low_complexity Low_complexity 1 21 0 1553 152 16 0 chr13 74409561 74409805 -27463364 + THE1A LTR MaLR 1 248 -107 766 168 0 8 chr13 74409834 74409959 -27463210 + AluSq/x SINE Alu 6 129 -184 1699 219 50 33 chr13 74409969 74410305 -27462864 - L1M1 LINE L1 -7126 439 93 348 64 0 0 chr13 74410305 74410352 -27462817 + (TG)n Simple_repeat Simple_repeat 2 48 0 1699 219 50 33 chr13 74410352 74410435 -27462734 - L1M1 LINE L1 -7472 93 13 2804 154 22 4 chr13 74411377 74411865 -27461304 + LOR1a LTR ERV1 1 497 0 195 42 0 0 chr13 74413391 74413415 -27459754 + (TA)n Simple_repeat Simple_repeat 2 25 0 725 169 96 40 chr13 74413468 74413645 -27459524 - L1MA9 LINE L1 0 6312 6126 2149 104 0 10 chr13 74413824 74414121 -27459048 + AluSx SINE Alu 1 294 -18 22 0 0 30 chr13 74414121 74414137 -27459032 + AT_rich Low_complexity Low_complexity 1 16 -16 3282 112 18 6 chr13 74414137 74414644 -27458525 - LTR10D LTR ERV1 0 513 1 22 0 0 30 chr13 74414644 74414660 -27458509 + AT_rich Low_complexity Low_complexity 16 32 0 27 49 0 0 chr13 74415066 74415107 -27458062 + AT_rich Low_complexity Low_complexity 1 41 0 403 316 60 43 chr13 74416074 74416375 -27456794 + L1ME2 LINE L1 12 317 -5753 705 289 107 14 chr13 74416448 74416942 -27456227 + L1ME2 LINE L1 500 1039 -5031 704 296 36 10 chr13 74416952 74417379 -27455790 + L1ME2 LINE L1 1224 1703 -4558 942 243 173 37 chr13 74417599 74418003 -27455166 + L1ME2 LINE L1 5489 5947 -151 2153 127 0 0 chr13 74420841 74421140 -27452029 + AluSx SINE Alu 1 299 -13 1074 274 35 13 chr13 74421505 74421819 -27451350 + MLT1A1 LTR MaLR 5 325 -40 285 298 89 32 chr13 74422003 74422127 -27451042 - L2 LINE L2 0 3313 3183 213 424 11 0 chr13 74424667 74424759 -27448410 + L3 LINE CR1 1414 1506 -71 29 28 0 0 chr13 74425323 74425359 -27447810 + AT_rich Low_complexity Low_complexity 1 36 0 387 41 0 0 chr13 74425576 74425625 -27447544 + (TC)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr13 74426349 74426377 -27446792 + AT_rich Low_complexity Low_complexity 1 28 0 535 100 0 0 chr13 74426533 74426613 -27446556 - MADE1 DNA Mariner 0 80 1 2644 211 11 4 chr13 74426737 74427282 -27445887 - MER44D DNA MER2_type -1 604 1 444 51 0 0 chr13 74428059 74428118 -27445051 + (TA)n Simple_repeat Simple_repeat 1 59 0 324 0 0 0 chr13 74428118 74428154 -27445015 + (CA)n Simple_repeat Simple_repeat 1 36 0 936 243 80 80 chr13 74429034 74429434 -27443735 + MLT1E2 LTR MaLR 205 604 -22 259 100 0 0 chr13 74430012 74430052 -27443117 - L1MA9 LINE L1 0 6312 6273 * 960 209 38 0 chr13 74430046 74430257 -27442912 + L1MA9 LINE L1 5896 6114 -198 469 231 196 17 chr13 74430703 74430876 -27442293 + L1MC3 LINE L1 5336 5539 -2246 1246 267 93 22 chr13 74430902 74431408 -27441761 + L1MC3 LINE L1 5692 6233 -1552 2007 98 6 62 chr13 74431754 74432079 -27441090 - AluSx SINE Alu -5 307 1 468 51 0 0 chr13 74433778 74433837 -27439332 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 4642 193 8 32 chr13 74434001 74435448 -27437721 - L1PA15 LINE L1 -6 6159 4736 36 23 0 0 chr13 74436246 74436289 -27436880 + AT_rich Low_complexity Low_complexity 1 43 0 357 301 115 29 chr13 74436327 74436536 -27436633 - MIR SINE MIR -21 241 15 235 280 105 63 chr13 74439108 74439251 -27433918 - MLT1J1 LTR MaLR -297 149 1 240 339 16 0 chr13 74439477 74439601 -27433568 - L1ME LINE L1 -336 5826 5701 1952 182 54 5 chr13 74439638 74440044 -27433125 - MSTA LTR MaLR 0 428 3 8304 184 34 9 chr13 74440046 74440214 -27432955 - MSTA-int LTR MaLR 0 1651 1489 185 83 28 0 chr13 74440214 74440250 -27432919 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 8304 184 34 9 chr13 74440250 74441691 -27431478 - MSTA-int LTR MaLR -162 1489 1 2023 172 70 5 chr13 74441691 74442093 -27431076 - MSTA LTR MaLR 0 428 1 2334 62 3 16 chr13 74443279 74443584 -27429585 + AluY SINE Alu 1 301 -10 422 310 53 18 chr13 74443651 74443822 -27429347 - MIR SINE MIR -82 180 4 1074 221 120 8 chr13 74444388 74444655 -27428514 - MSTA LTR MaLR -131 297 1 5954 201 60 56 chr13 74444656 74446227 -27426942 - MSTA-int LTR MaLR -1 1579 3 1976 178 81 15 chr13 74446229 74446622 -27426547 - MSTA LTR MaLR 0 428 10 186 177 32 16 chr13 74446827 74446889 -27426280 + (TA)n Simple_repeat Simple_repeat 2 64 0 719 191 28 22 chr13 74447035 74447213 -27425956 - MER3 DNA MER1_type -26 183 5 312 372 41 0 chr13 74447271 74447416 -27425753 + MIR SINE MIR 81 231 -31 2132 237 71 2 chr13 74447416 74447939 -27425230 + MER89 LTR ERV1 1 559 0 1302 291 80 35 chr13 74447939 74448568 -27424601 + MER89-int LTR ERV1 1 657 -6144 1462 200 54 7 chr13 74498608 74498770 -27374399 - L1 LINE L1 -2605 3541 3388 207 0 0 0 chr13 74498770 74498793 -27374376 + (TG)n Simple_repeat Simple_repeat 2 24 0 1462 200 54 7 chr13 74498793 74499055 -27374114 - L1 LINE L1 -2758 3388 3097 901 294 111 16 chr13 74499055 74499433 -27373736 + MLT1D LTR MaLR 90 503 -2 21 0 0 0 chr13 74499450 74499471 -27373698 + AT_rich Low_complexity Low_complexity 1 21 0 744 261 110 28 chr13 74500261 74500690 -27372479 + L1ME1 LINE L1 5698 6161 -5 380 281 51 102 chr13 74500848 74501221 -27371948 + L1MC3 LINE L1 3081 3434 -2712 598 275 110 34 chr13 74501328 74501801 -27371368 + L1MC3 LINE L1 3659 4167 -1979 893 234 16 1 chr13 74502467 74502989 -27370180 + L1MC3 LINE L1 5425 5993 -1792 388 273 66 21 chr13 74502984 74503198 -27369971 + L1ME3A LINE L1 5216 5438 -724 * 3211 164 42 12 chr13 74503199 74503772 -27369397 + LTR59 LTR ERV1 1 590 -7 2986 122 17 13 chr13 74503929 74504568 -27368601 - LTR8 LTR ERV1 -6 685 1 268 289 19 51 chr13 74504603 74504759 -27368410 + L1ME3A LINE L1 5659 5809 -353 3729 153 53 7 chr13 74504759 74505439 -27367730 + MER50 LTR ERV1 1 711 -23 434 242 8 8 chr13 74505482 74505602 -27367567 + L1ME3A LINE L1 5838 5957 -213 962 104 0 7 chr13 74505849 74505993 -27367176 - L1MA1 LINE L1 0 6302 6160 366 23 0 0 chr13 74507302 74507345 -27365824 + (TG)n Simple_repeat Simple_repeat 2 44 0 1857 128 4 0 chr13 74507348 74507613 -27365556 - AluSx SINE Alu -36 276 11 223 365 43 52 chr13 74508053 74508592 -27364577 - L2 LINE L2 -519 2795 2262 244 368 58 23 chr13 74509014 74509185 -27363984 - L2 LINE L2 -1405 1909 1733 213 385 55 28 chr13 74510110 74510328 -27362841 - L2 LINE L2 -2503 811 588 758 186 52 127 chr13 74510334 74510625 -27362544 + ORSL DNA AcHobo 7 275 0 666 302 16 16 chr13 74510793 74511041 -27362128 + L1MEc LINE L1 81 328 -6068 692 280 94 32 chr13 74511162 74511662 -27361507 + L1MEc LINE L1 549 1079 -5317 324 269 144 24 chr13 74511659 74511826 -27361343 + L1M4b LINE L1 4 190 -6669 * 351 312 0 0 chr13 74511830 74511939 -27361230 + L1M4b LINE L1 125 233 -6626 466 211 86 51 chr13 74512322 74512497 -27360672 + L1M4b LINE L1 1008 1188 -5667 26 50 0 0 chr13 74512530 74512570 -27360599 + AT_rich Low_complexity Low_complexity 1 40 0 1080 262 37 57 chr13 74512581 74512986 -27360183 + L1M4b LINE L1 1200 1591 -5264 2090 107 3 3 chr13 74512986 74513303 -27359866 - AluSg SINE Alu 0 310 1 1080 262 37 57 chr13 74513303 74513497 -27359672 + L1M4b LINE L1 1591 1787 -5068 458 346 49 22 chr13 74514477 74514875 -27358294 + ERVL LTR ERVL 1777 2236 -3457 285 284 42 11 chr13 74514908 74515003 -27358166 - MER94 DNA DNA -36 98 1 841 298 66 19 chr13 74515063 74515442 -27357727 + ERVL LTR ERVL 2311 2707 -3057 299 321 0 12 chr13 74515518 74515599 -27357570 - MER5C DNA MER1_type -244 80 1 491 374 40 17 chr13 74515751 74515873 -27357296 + ERVL LTR ERVL 2838 2956 -2529 1928 81 36 0 chr13 74515873 74516120 -27357049 - AluSg SINE Alu -13 297 42 491 374 40 17 chr13 74516120 74516350 -27356819 + ERVL LTR ERVL 2956 3198 -2287 2011 354 53 18 chr13 74516483 74517684 -27355485 + ERVL LTR ERVL 3402 4645 -1119 335 335 30 12 chr13 74517751 74517918 -27355251 + ERVL LTR ERVL 4780 4949 -815 27 0 0 0 chr13 74518675 74518702 -27354467 + AT_rich Low_complexity Low_complexity 1 27 0 2052 131 3 6 chr13 74518710 74519023 -27354146 + AluSq SINE Alu 1 312 -1 22 0 0 0 chr13 74519218 74519240 -27353929 + AT_rich Low_complexity Low_complexity 1 22 0 411 275 67 48 chr13 74519311 74519580 -27353589 + L1ME LINE L1 5279 5552 -599 714 276 5 27 chr13 74519586 74519771 -27353398 - MLT1E1 LTR MaLR 0 654 474 645 256 57 94 chr13 74519835 74520187 -27352982 - MLT1E1 LTR MaLR -312 342 4 2266 99 0 10 chr13 74520499 74520811 -27352358 - AluSg SINE Alu -1 309 1 24 77 0 0 chr13 74520984 74521036 -27352133 + AT_rich Low_complexity Low_complexity 1 52 0 259 313 75 0 chr13 74521072 74521139 -27352030 + MIR SINE MIR 30 101 -161 2109 174 3 13 chr13 74522365 74522744 -27350425 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 74523711 74523746 -27349423 + AT_rich Low_complexity Low_complexity 1 35 0 186 103 0 0 chr13 74524261 74524290 -27348879 + (A)n Simple_repeat Simple_repeat 1 29 0 2037 148 0 0 chr13 74524590 74524900 -27348269 + AluSx SINE Alu 1 310 -2 626 103 0 0 chr13 74525459 74525546 -27347623 + AluSq SINE Alu 68 154 -159 358 258 44 107 chr13 74527220 74527445 -27345724 - HERVL LTR ERVL -2875 2610 2400 * 457 311 91 77 chr13 74527431 74527927 -27345242 - HERVL LTR ERVL -1629 4025 3523 819 202 0 55 chr13 74527938 74527970 -27345199 + AluJo SINE Alu 82 114 -198 2564 93 6 8 chr13 74527970 74528325 -27344844 - THE1A LTR MaLR -1 354 1 819 202 0 55 chr13 74528325 74528475 -27344694 + AluJo SINE Alu 114 254 -58 994 206 10 14 chr13 74528475 74528684 -27344485 - AluJo SINE Alu -102 210 3 24 0 0 0 chr13 74528844 74528868 -27344301 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr13 74530415 74530451 -27342718 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 74530709 74530730 -27342439 + AT_rich Low_complexity Low_complexity 1 21 0 650 161 0 9 chr13 74530730 74530842 -27342327 - FLAM_C SINE Alu -20 123 13 1917 136 0 7 chr13 74530863 74531207 -27341962 - AluSx SINE Alu 0 342 1 402 200 0 0 chr13 74533312 74533402 -27339767 + LTR37B LTR ERV1 379 468 0 336 250 23 0 chr13 74533726 74533814 -27339355 + MER31-int LTR ERV1 3938 4027 -909 469 218 25 81 chr13 74534242 74534439 -27338730 + LTR37B LTR ERV1 193 378 -90 32 0 0 0 chr13 74534816 74534848 -27338321 + AT_rich Low_complexity Low_complexity 1 32 0 276 285 85 40 chr13 74536096 74536296 -27336873 + MLT1L LTR MaLR 369 577 -38 1259 236 60 52 chr13 74536377 74536853 -27336316 - MER67C LTR ERV1 -3 511 58 189 147 0 0 chr13 74537046 74537080 -27336089 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 22 0 0 0 chr13 74537298 74537320 -27335849 + AT_rich Low_complexity Low_complexity 1 22 0 5513 116 10 32 chr13 74537708 74538505 -27334664 + L1PA13 LINE L1 5038 5809 -354 2288 90 0 3 chr13 74538505 74538806 -27334363 + AluY SINE Alu 1 300 -11 5513 116 10 32 chr13 74538806 74539153 -27334016 + L1PA13 LINE L1 5809 6162 -1 214 182 15 15 chr13 74539182 74539248 -27333921 + MER5C DNA MER1_type 187 252 -72 584 226 8 0 chr13 74539254 74539378 -27333791 - AluJb SINE Alu -11 301 177 294 29 0 0 chr13 74539413 74539448 -27333721 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 248 135 0 0 chr13 74539464 74539501 -27333668 - Alu SINE Alu -230 72 36 6558 197 92 42 chr13 74539799 74541375 -27331794 - MER52A LTR ERV1 0 1755 1 1570 127 153 22 chr13 74541389 74541703 -27331466 - THE1A LTR MaLR 0 355 1 461 60 15 0 chr13 74541703 74541770 -27331399 - THE1A-int LTR MaLR 0 1580 1513 456 128 58 12 chr13 74541804 74541890 -27331279 + THE1-int LTR MaLR 851 940 -640 * 5430 126 17 2 chr13 74541885 74542709 -27330460 - THE1A-int LTR MaLR -744 836 1 2147 141 8 8 chr13 74542709 74543064 -27330105 - THE1A LTR MaLR 0 355 1 627 286 38 47 chr13 74543088 74543427 -27329742 - LTR16B LTR ERVL 0 464 129 723 273 61 15 chr13 74543434 74543698 -27329471 - MLT1C LTR MaLR -189 278 3 244 267 50 0 chr13 74544069 74544129 -27329040 + L2 LINE L2 3165 3227 -86 1627 211 7 0 chr13 74544763 74545062 -27328107 + AluJb SINE Alu 1 301 -11 556 313 55 32 chr13 74546447 74546942 -27326227 - L1MEc LINE L1 -4659 1737 1232 950 184 51 27 chr13 74547409 74547705 -27325464 - MER2 DNA MER2_type -1 344 6 3198 187 69 34 chr13 74547711 74548509 -27324660 - LTR1B LTR ERV1 0 826 1 35 24 0 0 chr13 74548681 74548723 -27324446 + AT_rich Low_complexity Low_complexity 1 42 0 1587 150 8 0 chr13 74548723 74548969 -27324200 - AluJo SINE Alu -21 291 44 305 340 75 6 chr13 74548969 74549128 -27324041 + MIR SINE MIR 93 262 0 198 266 62 0 chr13 74549127 74549191 -27323978 + MIR SINE MIR 116 183 -79 * 570 186 0 0 chr13 74549222 74549324 -27323845 + FLAM_A SINE Alu 22 123 -19 22 56 0 0 chr13 74549688 74549724 -27323445 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr13 74550559 74550594 -27322575 + AT_rich Low_complexity Low_complexity 1 35 0 269 296 46 0 chr13 74550657 74550765 -27322404 - L1ME LINE L1 -316 5854 5742 494 238 20 40 chr13 74550771 74550922 -27322247 + MER3 DNA MER1_type 44 191 -18 1219 233 77 14 chr13 74550988 74551340 -27321829 - MLT1A2 LTR MaLR 0 374 1 687 317 88 35 chr13 74551343 74551977 -27321192 - L1ME LINE L1 -554 5612 4951 260 254 0 0 chr13 74552228 74552299 -27320870 - L1P1 LINE L1 -716 5439 5369 225 139 0 0 chr13 74552504 74552547 -27320622 + (TC)n Simple_repeat Simple_repeat 2 44 0 44 46 0 0 chr13 74552708 74552773 -27320396 + AT_rich Low_complexity Low_complexity 1 65 0 29 47 0 0 chr13 74552869 74552912 -27320257 + AT_rich Low_complexity Low_complexity 1 43 0 21 89 0 0 chr13 74553114 74553170 -27319999 + AT_rich Low_complexity Low_complexity 1 56 0 205 243 96 124 chr13 74553385 74553562 -27319607 - MIR SINE MIR -48 214 43 21 57 0 0 chr13 74554567 74554602 -27318567 + AT_rich Low_complexity Low_complexity 1 35 0 323 227 27 0 chr13 74555335 74555410 -27317759 + MLT1H1 LTR MaLR 472 548 -7 908 284 26 14 chr13 74555465 74555810 -27317359 + L1ME3A LINE L1 5812 6160 -10 182 282 0 0 chr13 74557310 74557349 -27315820 - L2 LINE L2 -97 3216 3178 657 197 0 36 chr13 74557945 74558082 -27315087 + FLAM_C SINE Alu 2 133 0 800 111 7 0 chr13 74558227 74558362 -27314807 + (TTCC)n Simple_repeat Simple_repeat 4 139 0 278 212 115 26 chr13 74558401 74558514 -27314655 - L1MEd LINE L1 -5987 132 10 21 0 0 0 chr13 74559882 74559903 -27313266 + AT_rich Low_complexity Low_complexity 1 21 0 1625 189 3 28 chr13 74559956 74560273 -27312896 + AluJb SINE Alu 4 312 0 1259 265 25 13 chr13 74560896 74561292 -27311877 + L1ME1 LINE L1 5601 6001 -165 5594 74 13 4 chr13 74561403 74562162 -27311007 + MER4E LTR ERV1 1 766 0 25 0 0 0 chr13 74565018 74565043 -27308126 + AT_rich Low_complexity Low_complexity 1 25 0 533 244 0 9 chr13 74565062 74565177 -27307992 + MER63 DNA MER1_type 670 783 -277 330 144 21 10 chr13 74566481 74566578 -27306591 + (TA)n Simple_repeat Simple_repeat 2 99 0 4815 212 41 12 chr13 74567273 74567904 -27305265 + L1 LINE L1 2886 3570 -2576 1869 92 0 0 chr13 74567904 74568144 -27305025 - AluY SINE Alu -9 302 63 4815 212 41 12 chr13 74568144 74568699 -27304470 + L1 LINE L1 3570 4107 -2039 1087 231 4 0 chr13 74568697 74568931 -27304238 - L1PB4 LINE L1 -11 6145 5911 * 3459 196 16 29 chr13 74568932 74569736 -27303433 + L1 LINE L1 4095 4888 -1258 3416 202 36 53 chr13 74569730 74570926 -27302243 + L1MA2 LINE L1 4482 5696 -608 * 2010 137 33 39 chr13 74570926 74571290 -27301879 + THE1B LTR MaLR 3 364 0 11231 102 2 6 chr13 74571290 74572877 -27300292 + THE1B-int LTR MaLR 1 1580 0 2044 135 33 28 chr13 74572877 74573239 -27299930 + THE1B LTR MaLR 1 364 0 3416 202 36 53 chr13 74573239 74573792 -27299377 + L1MA2 LINE L1 5693 6137 -167 255 151 19 19 chr13 74573960 74574013 -27299156 + MER4A LTR ERV1 135 187 -477 5415 76 18 0 chr13 74574169 74574894 -27298275 - MER11B LTR ERVK -498 738 1 11058 177 34 21 chr13 74574894 74576981 -27296188 + LTR28-int LTR ERV1 1514 3528 -3563 7898 149 23 2 chr13 74576979 74578488 -27294681 + LTR28-int LTR ERV1 5417 7089 -2 * 738 296 0 0 chr13 74578490 74578669 -27294500 + LTR28 LTR ERV1 1 179 -841 588 268 121 55 chr13 74578698 74579010 -27294159 + MER52A LTR ERV1 246 1305 -141 7214 200 45 29 chr13 74579121 74580589 -27292580 - L1 LINE L1 -2122 5443 4000 2214 141 11 24 chr13 74580589 74580958 -27292211 - THE1B LTR MaLR 0 364 1 7214 200 45 29 chr13 74580958 74581305 -27291864 - L1 LINE L1 -3565 4000 3599 1935 134 36 16 chr13 74581305 74581611 -27291558 - AluSq SINE Alu -1 312 1 7214 200 45 29 chr13 74581611 74581764 -27291405 - L1 LINE L1 -3966 3599 3450 23 86 0 0 chr13 74582159 74582217 -27290952 + AT_rich Low_complexity Low_complexity 1 58 0 304 333 73 23 chr13 74582251 74582512 -27290657 - L1M4 LINE L1 -2931 3215 2942 313 57 57 14 chr13 74583709 74583779 -27289390 + (TA)n Simple_repeat Simple_repeat 2 74 0 23 33 0 0 chr13 74585422 74585452 -27287717 + AT_rich Low_complexity Low_complexity 1 30 0 3180 92 7 2 chr13 74585610 74586045 -27287124 - LTR3b LTR ERVK 0 437 1 948 197 16 5 chr13 74586576 74586764 -27286405 - L1M2 LINE L1 -686 5605 5416 1747 296 67 53 chr13 74586764 74587486 -27285683 - ERVL LTR ERVL -465 5228 4458 323 85 153 17 chr13 74587486 74587545 -27285624 - MADE1 DNA Mariner -2 78 12 350 96 0 0 chr13 74587570 74587622 -27285547 + MADE1 DNA Mariner 29 80 0 1033 275 52 20 chr13 74587622 74588108 -27285061 - ERVL LTR ERVL -1264 4500 3955 864 267 106 13 chr13 74588158 74588544 -27284625 - L1ME LINE L1 -399 5765 5344 397 297 22 12 chr13 74588544 74588682 -27284487 - MLT1F LTR MaLR -254 313 168 222 150 0 0 chr13 74588682 74588722 -27284447 + (GA)n Simple_repeat Simple_repeat 1 40 0 546 202 8 23 chr13 74588754 74588883 -27284286 - L1PA8 LINE L1 0 6172 6046 7908 225 47 10 chr13 74588883 74590819 -27282350 - L1P LINE L1 -3087 3059 1054 38 68 0 0 chr13 74590893 74590966 -27282203 + AT_rich Low_complexity Low_complexity 1 73 0 857 214 31 0 chr13 74591204 74591482 -27281687 + L1M4 LINE L1 5160 5444 -734 820 244 64 42 chr13 74591655 74591966 -27281203 + LTR34 LTR ERV1 382 699 0 939 156 6 6 chr13 74591969 74592142 -27281027 + L1MA4A LINE L1 6121 6293 -10 4888 186 26 16 chr13 74592155 74593548 -27279621 + L1MA8 LINE L1 4873 6286 -5 734 220 115 139 chr13 74593573 74594041 -27279128 - MSTB2 LTR MaLR 0 457 1 241 228 43 11 chr13 74594171 74594263 -27278906 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 1972 134 38 0 chr13 74594524 74594816 -27278353 + AluSx SINE Alu 1 303 -9 319 319 0 9 chr13 74595430 74595546 -27277623 + MER58B DNA MER1_type 191 305 -36 291 256 8 103 chr13 74595991 74596108 -27277061 - MLT2E LTR ERVL -8 620 515 710 309 100 14 chr13 74596191 74596527 -27276642 - MLT2E LTR ERVL -273 355 1 466 307 102 28 chr13 74598592 74598875 -27274294 + LTR16A1 LTR ERVL 96 399 -58 1644 215 33 54 chr13 74598901 74599279 -27273890 + MLT2D LTR ERVL 1 371 -43 279 0 0 0 chr13 74599279 74599310 -27273859 + (CA)n Simple_repeat Simple_repeat 1 31 0 1644 215 33 54 chr13 74599310 74599354 -27273815 + MLT2D LTR ERVL 371 414 0 13714 243 49 41 chr13 74599354 74600799 -27272370 + ERVL-D LTR ERVL 1 1433 -4221 7701 17 0 0 chr13 74600799 74602487 -27270682 - L1PA3 LINE L1 0 6155 4502 13714 243 49 41 chr13 74602487 74605043 -27268126 + ERVL-D LTR ERVL 1433 4124 -1530 314 330 53 22 chr13 74605047 74605274 -27267895 + L1M4c LINE L1 2174 2407 -3977 6860 264 45 41 chr13 74605274 74607779 -27265390 + L1M4c LINE L1 2648 5168 -1214 1189 200 8 4 chr13 74607779 74608014 -27265155 - MER46A DNA MER2_type 0 236 1 6860 264 45 41 chr13 74608014 74608483 -27264686 + L1M4c LINE L1 5168 5634 -748 1153 136 11 0 chr13 74608488 74608664 -27264505 + THE1A LTR MaLR 178 355 0 675 90 0 0 chr13 74608691 74608780 -27264389 + MLT1A1 LTR MaLR 277 365 0 679 226 0 0 chr13 74609064 74609197 -27263972 - FLAM_C SINE Alu -4 139 7 216 135 0 0 chr13 74609431 74609468 -27263701 + (TG)n Simple_repeat Simple_repeat 2 38 0 2707 29 0 0 chr13 74610678 74610989 -27262180 + AluY SINE Alu 1 311 0 200 35 35 0 chr13 74610997 74611026 -27262143 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 236 75 0 25 chr13 74611172 74611212 -27261957 + (CA)n Simple_repeat Simple_repeat 2 40 0 1984 117 0 7 chr13 74611468 74611758 -27261411 + AluSg SINE Alu 1 288 -22 2271 113 3 0 chr13 74613027 74613432 -27259737 + AluSx SINE Alu 1 406 0 21 36 0 0 chr13 74613486 74613514 -27259655 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr13 74613563 74613595 -27259574 + AT_rich Low_complexity Low_complexity 1 32 0 667 244 83 4 chr13 74613860 74614090 -27259079 + L1MA2 LINE L1 2887 3134 -3012 2302 87 3 3 chr13 74614202 74614514 -27258655 + MER11B LTR ERVK 911 1222 -14 1452 213 21 7 chr13 74614532 74614818 -27258351 - MER52-int LTR ERV1 -5799 1292 1003 4144 212 25 18 chr13 74614831 74615721 -27257448 - MER52-int LTR ERV1 -1161 4056 1 719 204 80 146 chr13 74615863 74616321 -27256848 - LTR28 LTR ERV1 -526 1229 1 6315 164 29 10 chr13 74616323 74616481 -27256688 + L1MA2 LINE L1 4030 4184 -2120 1991 86 8 8 chr13 74616481 74616749 -27256420 + AluY SINE Alu 28 295 -16 6315 164 29 10 chr13 74616749 74618823 -27254346 + L1MA2 LINE L1 4184 6304 0 252 0 0 0 chr13 74619315 74619343 -27253826 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 21 71 0 0 chr13 74619565 74619607 -27253562 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr13 74619650 74619673 -27253496 + AT_rich Low_complexity Low_complexity 1 23 0 1509 209 103 37 chr13 74619872 74620107 -27253062 - MLT1D LTR MaLR -3 502 284 1545 216 73 6 chr13 74620107 74620449 -27252720 - MLT1A1 LTR MaLR 0 365 1 1509 209 103 37 chr13 74620449 74620667 -27252502 - MLT1D LTR MaLR -221 284 19 29 47 0 0 chr13 74620845 74620888 -27252281 + AT_rich Low_complexity Low_complexity 1 43 0 275 197 16 0 chr13 74621431 74621492 -27251677 + MER53 DNA DNA 2 63 -126 2464 50 0 10 chr13 74622341 74622640 -27250529 + AluY SINE Alu 9 304 -7 749 183 15 0 chr13 74622706 74622871 -27250298 + FLAM_A SINE Alu 1 167 0 27 0 0 0 chr13 74623182 74623209 -27249960 + AT_rich Low_complexity Low_complexity 1 27 0 319 328 49 0 chr13 74623290 74623412 -27249757 + MER69 DNA AcHobo 155 282 -944 * 697 275 90 48 chr13 74623408 74624185 -27248984 + MER69 DNA AcHobo 1458 2267 -259 1303 160 14 0 chr13 74624340 74624559 -27248610 - Tigger1 DNA MER2_type -1 2417 2196 3422 139 28 5 chr13 74624561 74625131 -27248038 - Tigger1 DNA MER2_type -875 1543 961 5201 177 29 16 chr13 74625132 74626364 -27246805 + L1MA3 LINE L1 5062 6303 -2 5475 164 35 8 chr13 74626375 74627328 -27245841 - Tigger1 DNA MER2_type -1440 978 1 1336 183 39 45 chr13 74627331 74627664 -27245505 - Charlie2 DNA MER1_type -677 2185 1855 273 294 7 78 chr13 74627878 74628031 -27245138 - Charlie2 DNA MER1_type -2623 239 98 191 36 36 0 chr13 74629227 74629255 -27243914 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 536 261 134 27 chr13 74629535 74629938 -27243231 - L1M4 LINE L1 -2919 3227 2782 204 345 69 9 chr13 74630308 74630424 -27242745 - L2 LINE L2 -9 3304 3182 421 279 46 55 chr13 74631225 74631444 -27241725 - L2 LINE L2 0 3313 3097 278 177 80 71 chr13 74631830 74631943 -27241226 - L1MC4 LINE L1 -7 8035 7922 279 54 0 0 chr13 74631975 74632012 -27241157 + (TG)n Simple_repeat Simple_repeat 2 38 0 411 244 0 0 chr13 74632039 74632121 -27241048 - MER81 DNA DNA -31 83 2 1660 233 95 7 chr13 74632669 74633133 -27240036 - MLT1D LTR MaLR 0 505 1 756 72 0 0 chr13 74633288 74633399 -27239770 - AluY SINE Alu -1 310 200 189 74 0 0 chr13 74633694 74633721 -27239448 + (T)n Simple_repeat Simple_repeat 1 27 0 244 255 20 29 chr13 74634081 74634183 -27238986 + MER103 DNA DNA 47 147 -19 1189 237 116 25 chr13 74634289 74634644 -27238525 - MLT1D LTR MaLR -2 503 117 21 36 0 0 chr13 74634656 74634684 -27238485 + AT_rich Low_complexity Low_complexity 1 28 0 783 234 13 0 chr13 74634969 74635123 -27238046 - AluJb SINE Alu -20 292 137 807 197 69 9 chr13 74636388 74636606 -27236563 - MER61D LTR ERV1 0 749 254 22 70 0 0 chr13 74638580 74638623 -27234546 + AT_rich Low_complexity Low_complexity 1 43 0 320 276 117 39 chr13 74638901 74639158 -27234011 + L1ME4a LINE L1 5818 6094 -27 1056 284 96 28 chr13 74640665 74641238 -27231931 - MLT1G1 LTR MaLR 0 590 1 21 36 0 0 chr13 74641453 74641481 -27231688 + AT_rich Low_complexity Low_complexity 1 28 0 399 41 0 0 chr13 74642352 74642401 -27230768 + (TG)n Simple_repeat Simple_repeat 2 50 0 204 301 14 14 chr13 74643589 74643662 -27229507 + MIR SINE MIR 70 142 -120 511 296 12 19 chr13 74693996 74694257 -27178912 + CT-rich Low_complexity Low_complexity 1 259 0 25 0 0 0 chr13 74694549 74694574 -27178595 + AT_rich Low_complexity Low_complexity 1 25 0 846 158 79 12 chr13 74695481 74695646 -27177523 - L1PB4 LINE L1 -198 5958 5783 2009 145 7 0 chr13 74695646 74695950 -27177219 - THE1B LTR MaLR 0 364 59 396 334 118 30 chr13 74696051 74696661 -27176508 - L1M4 LINE L1 -1078 5068 4405 2241 144 15 20 chr13 74696925 74697076 -27176093 - MER57A LTR ERV1 -5 398 248 2220 96 7 0 chr13 74697076 74697377 -27175792 + AluSc SINE Alu 2 304 -5 2241 144 15 20 chr13 74697377 74697620 -27175549 - MER57A LTR ERV1 -155 248 6 234 318 26 56 chr13 74697818 74697948 -27175221 - HAL1 LINE L1 -2173 334 213 1948 123 19 19 chr13 74697948 74698258 -27174911 + AluSx SINE Alu 1 310 -2 234 318 26 56 chr13 74698258 74698360 -27174809 - HAL1 LINE L1 -2294 213 109 1762 138 39 7 chr13 74699123 74699405 -27173764 + AluSx SINE Alu 1 291 -21 205 115 19 19 chr13 74699405 74699457 -27173712 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 35 0 0 chr13 74699778 74699807 -27173362 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 74700519 74700542 -27172627 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr13 74701465 74701505 -27171664 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr13 74701504 74701529 -27171640 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 242 366 161 35 chr13 74701798 74702312 -27170857 + L2 LINE L2 347 925 -2389 * 518 310 50 12 chr13 74702306 74702548 -27170621 - MIR SINE MIR 0 262 12 357 24 0 0 chr13 74703777 74703819 -27169350 + (TA)n Simple_repeat Simple_repeat 2 43 0 345 359 41 12 chr13 74704399 74704569 -27168600 - HAL1 LINE L1 -1599 908 734 23 33 0 0 chr13 74704915 74704945 -27168224 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 74705187 74705215 -27167954 + AT_rich Low_complexity Low_complexity 1 28 0 12248 182 22 9 chr13 74705772 74709094 -27164075 - L1PA13 LINE L1 -6 6157 2804 2783 207 3 13 chr13 74709282 74709895 -27163274 - L1PA13 LINE L1 -3373 2773 2167 1790 174 33 42 chr13 74710367 74710728 -27162441 + MER47A DNA MER2_type 8 365 -1 301 277 154 45 chr13 74711639 74711931 -27161238 - L1MEc LINE L1 -4814 1582 1259 25 65 0 0 chr13 74712110 74712156 -27161013 + AT_rich Low_complexity Low_complexity 1 46 0 376 318 107 20 chr13 74712230 74712482 -27160687 - L1MEc LINE L1 -5285 920 647 387 41 0 0 chr13 74713289 74713338 -27159831 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr13 74714359 74714388 -27158781 + AT_rich Low_complexity Low_complexity 1 29 0 193 314 0 0 chr13 74714755 74714806 -27158363 + L2 LINE L2 3222 3272 0 1051 173 44 0 chr13 74714941 74715166 -27158003 - L1MA4 LINE L1 -5 6295 6061 393 283 96 37 chr13 74716121 74716308 -27156861 - LTR33 LTR ERVL -45 476 279 23 0 0 0 chr13 74717063 74717086 -27156083 + AT_rich Low_complexity Low_complexity 1 23 0 689 112 0 0 chr13 74717171 74717269 -27155900 + AluSq/x SINE Alu 31 128 -184 245 292 80 18 chr13 74717497 74717610 -27155559 + L3 LINE CR1 1276 1395 -182 229 284 37 12 chr13 74718021 74718102 -27155067 + L2 LINE L2 2601 2683 -631 350 269 215 0 chr13 74719241 74719371 -27153798 - MIR SINE MIR -27 235 78 192 77 0 0 chr13 74720071 74720097 -27153072 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 245 273 0 30 chr13 74720336 74720402 -27152767 + MIR SINE MIR 86 149 -113 492 258 8 8 chr13 74721327 74721459 -27151710 + L2 LINE L2 2633 2764 -550 21 0 0 0 chr13 74721531 74721552 -27151617 + AT_rich Low_complexity Low_complexity 1 21 0 6865 147 14 11 chr13 74721597 74723845 -27149324 - L1MA1 LINE L1 0 6302 4045 274 332 59 30 chr13 74723845 74724047 -27149122 + L2 LINE L2 2949 3156 -157 737 252 108 41 chr13 74724175 74724662 -27148507 - MER34 LTR ERV1 0 542 1 231 36 0 0 chr13 74724762 74724790 -27148379 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 38 61 0 0 chr13 74725433 74725499 -27147670 + AT_rich Low_complexity Low_complexity 1 66 0 3053 183 27 7 chr13 74725930 74726521 -27146648 + LTR26 LTR ERV1 1 603 0 21 36 0 0 chr13 74726688 74726716 -27146453 + AT_rich Low_complexity Low_complexity 1 28 0 184 122 49 0 chr13 74726750 74726791 -27146378 + (TA)n Simple_repeat Simple_repeat 1 43 0 27 29 0 0 chr13 74726846 74726880 -27146289 + AT_rich Low_complexity Low_complexity 1 34 0 1450 160 29 82 chr13 74726919 74727262 -27145907 + L1MC1 LINE L1 6002 6326 -7 28 0 0 0 chr13 74727376 74727404 -27145765 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 74728525 74728554 -27144615 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr13 74729033 74729075 -27144094 + AT_rich Low_complexity Low_complexity 1 42 0 340 276 9 91 chr13 74729241 74729462 -27143707 - L2 LINE L2 0 3313 3111 809 312 252 19 chr13 74729663 74730334 -27142835 - L2 LINE L2 -419 2895 2021 197 33 33 0 chr13 74730334 74730364 -27142805 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 809 312 252 19 chr13 74730364 74730461 -27142708 - L2 LINE L2 -1293 2021 1948 569 346 123 24 chr13 74730575 74731130 -27142039 - L2 LINE L2 0 3313 2708 862 179 112 15 chr13 74731311 74731507 -27141662 + MSTA LTR MaLR 214 428 0 21 36 0 0 chr13 74731923 74731951 -27141218 + AT_rich Low_complexity Low_complexity 1 28 0 2498 27 0 3 chr13 74732687 74732981 -27140188 + AluYa5 SINE Alu 1 293 -18 1750 158 6 19 chr13 74733867 74734220 -27138949 - MER4A LTR ERV1 0 664 257 591 134 21 10 chr13 74734216 74734313 -27138856 - MER4A LTR ERV1 -566 98 1 * 378 0 0 0 chr13 74734564 74734606 -27138563 + (CA)n Simple_repeat Simple_repeat 1 42 0 3439 173 52 6 chr13 74734610 74735285 -27137884 + MER67C LTR ERV1 5 710 0 253 246 16 0 chr13 74735285 74735346 -27137823 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 243 357 21 0 chr13 74735289 74735432 -27137737 + (CATA)n Simple_repeat Simple_repeat 4 149 0 * 21 0 0 0 chr13 74736329 74736350 -27136819 + AT_rich Low_complexity Low_complexity 1 21 0 182 432 0 0 chr13 74737372 74737460 -27135709 - MIR SINE MIR -122 140 53 22 70 0 0 chr13 74737780 74737823 -27135346 + AT_rich Low_complexity Low_complexity 1 43 0 3588 206 6 23 chr13 74738423 74739195 -27133974 - MER49 LTR ERV1 -10 913 153 183 146 0 0 chr13 74740144 74740185 -27132984 + (TC)n Simple_repeat Simple_repeat 2 42 0 1766 227 34 18 chr13 74740270 74740760 -27132409 - MLT1D LTR MaLR -10 580 1 1606 249 33 27 chr13 74740769 74741477 -27131692 - L1MC/D LINE L1 -743 5797 5159 662 225 115 61 chr13 74741576 74741698 -27131471 - L1MDa LINE L1 -3510 3030 2916 2034 120 0 13 chr13 74741698 74741998 -27131171 - AluSx SINE Alu -16 296 1 662 225 115 61 chr13 74741998 74742478 -27130691 - L1MDa LINE L1 -3624 2916 2372 6612 155 18 21 chr13 74742493 74742590 -27130579 - L1MA2 LINE L1 0 6304 6208 2230 86 0 13 chr13 74742590 74742891 -27130278 + AluY SINE Alu 1 297 -14 6612 155 18 21 chr13 74742891 74742974 -27130195 - L1MA2 LINE L1 -96 6208 6126 1869 153 0 3 chr13 74742974 74743282 -27129887 - AluSx SINE Alu 0 307 1 6612 155 18 21 chr13 74743282 74745363 -27127806 - L1MA2 LINE L1 -178 6126 4047 21 0 0 0 chr13 74745388 74745409 -27127760 + AT_rich Low_complexity Low_complexity 1 21 0 1295 253 86 66 chr13 74745452 74745750 -27127419 - L1MDa LINE L1 -4325 2215 1924 183 100 0 0 chr13 74745750 74745780 -27127389 + (TG)n Simple_repeat Simple_repeat 2 31 0 1733 185 65 0 chr13 74745790 74746131 -27127038 - MER47A DNA MER2_type -3 363 1 1295 253 86 66 chr13 74746131 74746818 -27126351 - L1MDa LINE L1 -4624 1916 1199 21 0 0 0 chr13 74747444 74747465 -27125704 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr13 74748180 74748215 -27124954 + AT_rich Low_complexity Low_complexity 1 35 0 628 145 26 0 chr13 74748729 74748846 -27124323 + Tigger1 DNA MER2_type 1462 1581 -837 * 2666 218 224 26 chr13 74748841 74749685 -27123484 + LTR28 LTR ERV1 10 1020 0 3092 179 182 3 chr13 74749686 74750391 -27122778 + Tigger1 DNA MER2_type 1563 2393 -25 1903 162 7 3 chr13 74750491 74750800 -27122369 + AluJb SINE Alu 1 310 -2 653 262 16 4 chr13 74750848 74751096 -27122073 + L1MEc LINE L1 2160 2410 -3986 979 251 153 79 chr13 74751135 74751303 -27121866 + L1M4 LINE L1 3770 3924 -2222 1814 102 18 4 chr13 74751303 74751577 -27121592 - L1PA14 LINE L1 0 6161 5884 979 251 153 79 chr13 74751577 74752400 -27120769 + L1M4 LINE L1 3924 4887 -1259 2467 60 0 0 chr13 74752400 74752698 -27120471 - AluY SINE Alu -13 298 1 979 251 153 79 chr13 74752698 74753043 -27120126 + L1M4 LINE L1 4887 5205 -941 21 0 0 0 chr13 74754416 74754437 -27118732 + AT_rich Low_complexity Low_complexity 1 21 0 455 103 0 103 chr13 74754810 74754897 -27118272 + LTR23 LTR ERV1 158 235 -202 1713 124 4 0 chr13 74754897 74755164 -27118005 - L1PB1 LINE L1 -3 6148 5881 234 299 96 48 chr13 74755164 74755499 -27117670 - L1ME LINE L1 -470 5700 5350 30 0 0 0 chr13 74756947 74756977 -27116192 + AT_rich Low_complexity Low_complexity 1 30 0 471 236 0 47 chr13 74757229 74757356 -27115813 + MLT2C1 LTR ERVL 269 389 -8 7255 193 85 21 chr13 74757406 74758999 -27114170 + MER52A LTR ERV1 1 1755 0 258 242 142 0 chr13 74759000 74759120 -27114049 - L1MCa LINE L1 -4224 2340 2204 1607 278 56 42 chr13 74759173 74759907 -27113262 - L1MCa LINE L1 -5296 749 6 2382 251 70 38 chr13 74759974 74762300 -27110869 - L1MDa LINE L1 -2848 3692 1300 2812 240 63 53 chr13 74762303 74763618 -27109551 - L1MD1 LINE L1 -1 6635 5296 9838 195 24 18 chr13 74763645 74766718 -27106451 - L1MA8 LINE L1 -3 6288 3205 1265 264 57 33 chr13 74766720 74766829 -27106340 - L1MD1 LINE L1 -6103 437 332 208 0 62 0 chr13 74766829 74766861 -27106308 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1265 264 57 33 chr13 74766861 74767176 -27105993 - L1MD1 LINE L1 -6208 332 3 1204 265 63 26 chr13 74767167 74767624 -27105545 - L1MDa LINE L1 -5233 1310 837 * 346 282 54 98 chr13 74768062 74768378 -27104791 - L1MDa LINE L1 -6196 344 43 211 388 110 11 chr13 74768987 74769250 -27103919 - L2 LINE L2 -221 3092 2804 27 49 0 0 chr13 74769563 74769604 -27103565 + AT_rich Low_complexity Low_complexity 1 41 0 237 307 52 64 chr13 74769719 74769970 -27103199 + L1ME3A LINE L1 58 305 -5814 438 280 76 89 chr13 74771692 74772142 -27101027 + L1ME3A LINE L1 4721 5164 -965 2122 128 3 0 chr13 74772222 74772520 -27100649 + AluSx SINE Alu 1 299 -13 410 248 49 137 chr13 74772535 74772638 -27100531 + L1ME3A LINE L1 5738 5848 -305 2299 62 3 14 chr13 74772638 74772958 -27100211 + AluY SINE Alu 3 319 0 410 248 49 137 chr13 74772958 74773283 -27099886 + L1ME3A LINE L1 5848 6131 -22 42 0 0 0 chr13 74774412 74774454 -27098715 + AT_rich Low_complexity Low_complexity 1 42 0 4220 200 26 45 chr13 74774539 74775092 -27098077 - L1MA9 LINE L1 -5 6307 5784 351 0 0 0 chr13 74775092 74775131 -27098038 + (TA)n Simple_repeat Simple_repeat 1 39 0 4220 200 26 45 chr13 74775131 74775691 -27097478 - L1MA9 LINE L1 -528 5784 5215 * 4780 214 46 28 chr13 74775689 74776949 -27096220 + L1MA9 LINE L1 3934 5216 -930 902 210 5 24 chr13 74777946 74778151 -27095018 + L1PA16 LINE L1 5957 6157 -9 771 213 7 0 chr13 74778233 74778383 -27094786 - MER2 DNA MER2_type -6 339 189 12117 168 39 21 chr13 74778384 74780750 -27092419 - Tigger1 DNA MER2_type -1 2417 11 853 200 32 0 chr13 74780787 74780942 -27092227 - MER2 DNA MER2_type -184 161 2 243 0 0 0 chr13 74780945 74780972 -27092197 + (TG)n Simple_repeat Simple_repeat 2 28 0 2266 118 16 31 chr13 74781149 74781530 -27091639 + THE1C LTR MaLR 1 375 0 1637 216 19 8 chr13 74782384 74782745 -27090424 - MLT1A1 LTR MaLR 0 365 1 41 58 0 0 chr13 74783186 74783255 -27089914 + AT_rich Low_complexity Low_complexity 1 69 0 361 348 25 0 chr13 74784321 74784525 -27088644 + MER20B DNA MER1_type 157 365 -418 2044 105 0 7 chr13 74784940 74785248 -27087921 + AluY SINE Alu 1 306 0 480 285 108 52 chr13 74785356 74785583 -27087586 + HAL1 LINE L1 809 1059 -1448 2057 116 10 13 chr13 74785583 74785885 -27087284 + AluSq SINE Alu 1 301 -12 480 285 108 52 chr13 74785885 74785962 -27087207 + HAL1 LINE L1 1059 1130 -1377 397 252 144 18 chr13 74786036 74786314 -27086855 + HAL1 LINE L1 2001 2313 -194 21 36 0 0 chr13 74786481 74786509 -27086660 + AT_rich Low_complexity Low_complexity 1 28 0 182 143 63 0 chr13 74786611 74786674 -27086495 + (TA)n Simple_repeat Simple_repeat 2 68 0 298 276 77 13 chr13 74787583 74787739 -27085430 + L1ME3A LINE L1 5994 6159 -11 5547 205 158 28 chr13 74788072 74789565 -27083604 - MER52A LTR ERV1 0 1755 1 276 170 19 0 chr13 74789645 74789698 -27083471 - MER67D LTR ERV1 -28 486 433 21 36 0 0 chr13 74790704 74790732 -27082437 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr13 74790963 74790987 -27082182 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 29 28 0 0 chr13 74790988 74791024 -27082145 + AT_rich Low_complexity Low_complexity 1 36 0 1020 178 57 26 chr13 74792004 74792232 -27080937 + MER44D DNA MER2_type 4 508 -101 923 229 172 0 chr13 74792232 74792459 -27080710 + Tigger7 DNA MER2_type 2 267 -2220 502 101 0 22 chr13 74792462 74792551 -27080618 + (TA)n Simple_repeat Simple_repeat 1 87 0 327 288 51 17 chr13 74792729 74792847 -27080322 - MIR SINE MIR -23 239 118 581 189 110 110 chr13 74792906 74793223 -27079946 + MER33 DNA MER1_type 2 318 -6 234 299 11 51 chr13 74793738 74793915 -27079254 - L1MCc LINE L1 -6227 196 27 229 316 26 26 chr13 74794204 74794318 -27078851 + MIR SINE MIR 119 232 -30 25 65 0 0 chr13 74794660 74794706 -27078463 + AT_rich Low_complexity Low_complexity 1 46 0 180 125 0 0 chr13 74797555 74797587 -27075582 + (TAG)n Simple_repeat Simple_repeat 1 32 0 251 272 0 0 chr13 74797879 74797960 -27075209 + (TA)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr13 74798072 74798093 -27075076 + AT_rich Low_complexity Low_complexity 1 21 0 286 268 12 12 chr13 74799518 74799600 -27073569 + MER63 DNA MER1_type 981 1062 0 348 133 0 0 chr13 74800161 74800221 -27072948 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 1280 190 53 8 chr13 74800228 74800630 -27072539 + LOR1b LTR ERV1 9 461 0 204 254 0 0 chr13 74800630 74800689 -27072480 + GA-rich Low_complexity Low_complexity 2 60 0 24 0 0 0 chr13 74801702 74801726 -27071443 + AT_rich Low_complexity Low_complexity 1 24 0 375 279 159 9 chr13 74802718 74802944 -27070225 + L1M4 LINE L1 4050 4309 -1837 * 736 335 38 21 chr13 74802933 74803351 -27069818 + L1MA10 LINE L1 173 597 -5716 1747 277 97 29 chr13 74803506 74803595 -27069574 + L1MA10 LINE L1 777 859 -5523 2121 172 18 48 chr13 74803595 74804030 -27069139 + MSTA LTR MaLR 3 424 -4 8698 191 21 3 chr13 74804034 74805656 -27067513 + MSTA-int LTR MaLR 1 1651 0 2398 159 34 2 chr13 74805656 74806071 -27067098 + MSTA LTR MaLR 1 428 0 1747 277 97 29 chr13 74806071 74806777 -27066392 + L1MA10 LINE L1 861 1549 -4833 1273 176 9 13 chr13 74806777 74807010 -27066159 - MER46A DNA MER2_type 0 236 5 1747 277 97 29 chr13 74807010 74807507 -27065662 + L1MA10 LINE L1 1549 2011 -4371 4115 224 35 72 chr13 74807516 74807943 -27065226 + L1MA10 LINE L1 3428 3869 -2701 3235 108 49 91 chr13 74807943 74808388 -27064781 - MER4B LTR ERV1 0 610 199 2171 112 3 0 chr13 74808388 74808683 -27064486 - AluSg SINE Alu -14 296 1 3235 108 49 91 chr13 74808683 74808874 -27064295 - MER4B LTR ERV1 -411 199 1 4115 224 35 72 chr13 74808874 74809426 -27063743 + L1MA10 LINE L1 3869 4440 -2130 1955 119 4 7 chr13 74809426 74809703 -27063466 + AluSx SINE Alu 1 276 -36 297 0 0 0 chr13 74809703 74809736 -27063433 + (TAA)n Simple_repeat Simple_repeat 2 34 0 4115 224 35 72 chr13 74809736 74810221 -27062948 + L1MA10 LINE L1 4439 4940 -1630 1500 226 3 0 chr13 74810221 74810509 -27062660 + AluJb SINE Alu 3 291 -21 4115 224 35 72 chr13 74810509 74812337 -27060832 + L1MA10 LINE L1 4940 6567 -3 982 267 89 29 chr13 74812334 74812949 -27060220 + L1M4 LINE L1 4275 4926 -1220 * 226 211 0 0 chr13 74813916 74813954 -27059215 - MIR SINE MIR -137 125 88 703 211 5 93 chr13 74814057 74814261 -27058908 + MER20 DNA MER1_type 23 208 -11 521 233 53 48 chr13 74814304 74814430 -27058739 + MER20 DNA MER1_type 91 219 0 29 90 0 0 chr13 74814756 74814834 -27058335 + AT_rich Low_complexity Low_complexity 1 78 0 904 188 51 35 chr13 74815519 74815716 -27057453 + L1MC1 LINE L1 5982 6181 -152 826 176 11 69 chr13 74815731 74815838 -27057331 + L1MC1 LINE L1 6157 6250 -83 6592 151 26 56 chr13 74815838 74817176 -27055993 - HSMAR2 DNA Mariner -2 1300 3 826 176 11 69 chr13 74817176 74817256 -27055913 + L1MC1 LINE L1 6250 6333 0 197 163 20 0 chr13 74817289 74817338 -27055831 + CT-rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chr13 74817677 74817718 -27055451 + AT_rich Low_complexity Low_complexity 1 41 0 252 289 126 37 chr13 74818298 74818488 -27054681 + L1MCc LINE L1 984 1190 -5233 413 360 142 23 chr13 74818870 74819393 -27053776 + L2 LINE L2 2093 2677 -637 2101 73 22 0 chr13 74819483 74819758 -27053411 - AluSq SINE Alu -10 303 23 210 176 0 0 chr13 74820028 74820079 -27053090 + (TG)n Simple_repeat Simple_repeat 2 52 0 314 333 111 0 chr13 74820093 74820210 -27052959 + L2 LINE L2 3179 3308 -5 41 36 0 0 chr13 74820264 74820319 -27052850 + AT_rich Low_complexity Low_complexity 1 55 0 1635 223 5 27 chr13 74820415 74820788 -27052381 - MLT1A1 LTR MaLR 0 365 1 5662 104 2 11 chr13 74822449 74823279 -27049890 + L1PA13 LINE L1 5341 6163 0 24 0 0 0 chr13 74823617 74823641 -27049528 + AT_rich Low_complexity Low_complexity 1 24 0 19132 33 2 3 chr13 74824145 74826488 -27046681 - L1PA3 LINE L1 -1680 4466 2126 7765 23 0 0 chr13 74826488 74828179 -27044990 + L1PA3 LINE L1 4464 6154 -1 31 0 0 0 chr13 74828556 74828587 -27044582 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr13 74829050 74829091 -27044078 + AT_rich Low_complexity Low_complexity 1 41 0 27 29 0 0 chr13 74829539 74829573 -27043596 + AT_rich Low_complexity Low_complexity 1 34 0 191 302 175 0 chr13 74829997 74830060 -27043109 - L2 LINE L2 -45 3227 3154 187 326 84 21 chr13 74831015 74831300 -27041869 - L2 LINE L2 -1356 1958 1656 231 281 22 11 chr13 74831452 74831541 -27041628 - L1MC4 LINE L1 -1339 6703 6614 303 295 67 57 chr13 74831861 74832054 -27041115 - L2 LINE L2 -1 3312 3118 323 291 0 0 chr13 74832357 74832436 -27040733 + MER5A DNA MER1_type 31 109 -80 575 250 82 8 chr13 74832565 74832833 -27040336 - Charlie5 DNA MER1_type 0 2616 2329 496 221 25 0 chr13 74832828 74832950 -27040219 - Charlie5 DNA MER1_type -2471 141 17 * 3209 225 79 68 chr13 74832956 74833772 -27039397 + L1MC2 LINE L1 3865 4671 -1673 1428 227 10 7 chr13 74833772 74833901 -27039268 + AluJb SINE Alu 1 128 -184 292 22 44 0 chr13 74833901 74833946 -27039223 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 1428 227 10 7 chr13 74833946 74834120 -27039049 + AluJb SINE Alu 128 305 -7 2240 111 0 0 chr13 74834130 74834428 -27038741 + AluSg SINE Alu 1 298 -12 3209 225 79 68 chr13 74834428 74834979 -27038190 + L1MC2 LINE L1 4679 5223 -1121 2560 174 22 25 chr13 74834979 74835535 -27037634 + L1MA7 LINE L1 5738 6291 0 3209 225 79 68 chr13 74835535 74836186 -27036983 + L1MC2 LINE L1 5223 5959 -385 312 28 0 0 chr13 74836186 74836222 -27036947 + tRNA-Gly-GGC tRNA tRNA 1 36 -38 3209 225 79 68 chr13 74836222 74836371 -27036798 + L1MC2 LINE L1 5959 6105 -239 520 191 30 38 chr13 74836387 74836518 -27036651 + L1MC2 LINE L1 6206 6335 -9 192 316 88 15 chr13 74837496 74837632 -27035537 - L2 LINE L2 -935 2379 2234 317 297 18 28 chr13 74838657 74838891 -27034278 + CT-rich Low_complexity Low_complexity 1 231 0 212 303 9 28 chr13 74839244 74839353 -27033816 + CT-rich Low_complexity Low_complexity 1 107 0 388 284 34 69 chr13 74840309 74840629 -27032540 - L1MEc LINE L1 -4552 1844 1536 2334 90 0 0 chr13 74840737 74841049 -27032120 - AluSx SINE Alu 0 312 1 1573 155 87 33 chr13 74841457 74841792 -27031377 + MER47A DNA MER2_type 14 366 0 494 306 88 18 chr13 74841892 74842176 -27030993 + L1MEc LINE L1 27 330 -6066 3167 188 16 50 chr13 74842197 74842927 -27030242 + MER54A LTR ERVL 4 901 0 948 291 90 2 chr13 74842945 74843344 -27029825 + L1MEc LINE L1 381 814 -5582 361 252 59 42 chr13 74843391 74843510 -27029659 + L1MEc LINE L1 807 927 -5469 839 272 49 37 chr13 74843615 74843939 -27029230 + MER93a LTR ERV1 74 401 -1 566 296 96 31 chr13 74844083 74844837 -27028332 + L1MEc LINE L1 1000 1836 -4510 680 204 0 35 chr13 74844838 74844980 -27028189 - MSTB1 LTR MaLR 0 432 296 31 0 0 0 chr13 74845305 74845336 -27027833 + AT_rich Low_complexity Low_complexity 1 31 0 696 158 128 8 chr13 74845358 74845515 -27027654 - AluSg/x SINE Alu 0 303 131 1780 116 122 57 chr13 74845692 74846046 -27027123 - L1PA7 LINE L1 -76 6078 5702 * 2243 109 0 0 chr13 74846044 74846357 -27026812 + L1PA7 LINE L1 5390 5702 -466 784 219 50 13 chr13 74846584 74846822 -27026347 + L1MA7 LINE L1 6040 6286 -5 28 0 0 0 chr13 74846827 74846855 -27026314 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 74847544 74847566 -27025603 + AT_rich Low_complexity Low_complexity 1 22 0 267 290 76 35 chr13 74848467 74848612 -27024557 - L1ME LINE L1 -440 5722 5572 31 26 0 0 chr13 74851676 74851714 -27021455 + AT_rich Low_complexity Low_complexity 1 38 0 1722 144 74 3 chr13 74851955 74852239 -27020930 - AluSx SINE Alu -8 304 1 2133 89 11 0 chr13 74853102 74853383 -27019786 + AluSq SINE Alu 1 284 -29 279 0 0 0 chr13 74853386 74853417 -27019752 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 285 286 186 15 chr13 74853736 74854097 -27019072 + MER31B LTR ERV1 3 466 0 27 29 0 0 chr13 74855638 74855672 -27017497 + AT_rich Low_complexity Low_complexity 1 34 0 2342 78 3 3 chr13 74855735 74856042 -27017127 + AluSp SINE Alu 1 307 -6 233 272 25 12 chr13 74858005 74858086 -27015083 - MER63 DNA MER1_type 0 1062 981 25 65 0 0 chr13 74861834 74861880 -27011289 + AT_rich Low_complexity Low_complexity 1 46 0 29 32 0 0 chr13 74862201 74862232 -27010937 + AT_rich Low_complexity Low_complexity 1 31 0 232 315 52 64 chr13 74863331 74863582 -27009587 + L1ME LINE L1 58 305 -5814 417 282 76 89 chr13 74865306 74865756 -27007413 + L1ME LINE L1 4721 5164 -965 2031 136 3 0 chr13 74865836 74866130 -27007039 + AluSx SINE Alu 1 295 -17 240 237 41 107 chr13 74866149 74866252 -27006917 + L1ME LINE L1 5738 5831 -322 2174 79 3 14 chr13 74866252 74866572 -27006597 + AluY SINE Alu 3 319 0 240 237 41 107 chr13 74866572 74866634 -27006535 + L1ME LINE L1 5831 5895 -258 231 204 0 0 chr13 74866634 74866683 -27006486 + (TA)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr13 74867093 74867114 -27006055 + AT_rich Low_complexity Low_complexity 1 21 0 272 294 52 0 chr13 74868012 74868165 -27005004 + (TATATG)n Simple_repeat Simple_repeat 3 163 0 3435 169 53 6 chr13 74868170 74868834 -27004335 - MER67C LTR ERV1 -11 699 5 360 0 0 0 chr13 74868838 74868878 -27004291 + (TG)n Simple_repeat Simple_repeat 1 40 0 527 141 20 30 chr13 74869129 74869228 -27003941 + MER4A LTR ERV1 1 98 -566 * 1750 161 6 19 chr13 74869224 74869577 -27003592 + MER4A LTR ERV1 257 664 0 2026 98 7 13 chr13 74871178 74871484 -27001685 - AluSp SINE Alu -9 304 1 27 29 0 0 chr13 74871547 74871581 -27001588 + AT_rich Low_complexity Low_complexity 1 34 0 711 270 113 26 chr13 74873335 74873795 -26999374 - L1MDa LINE L1 -4842 1698 1199 21 0 0 0 chr13 74874421 74874442 -26998727 + AT_rich Low_complexity Low_complexity 1 21 0 628 145 26 0 chr13 74875705 74875822 -26997347 + Tigger1 DNA MER2_type 1462 1581 -837 * 1818 248 230 34 chr13 74875817 74876652 -26996517 + LTR28 LTR ERV1 10 1008 -12 26 71 0 0 chr13 74877996 74878038 -26995131 + GC_rich Low_complexity Low_complexity 1 42 0 385 253 0 0 chr13 74878046 74878125 -26995044 + G-rich Low_complexity Low_complexity 1 79 0 1176 152 72 47 chr13 74878296 74878572 -26994597 + AluJo SINE Alu 9 291 -21 238 332 124 33 chr13 74878649 74878923 -26994246 + L2 LINE L2 3014 3312 -1 2055 118 0 4 chr13 74879138 74879418 -26993751 + AluSc SINE Alu 1 279 -30 867 255 8 111 chr13 74879629 74880006 -26993163 - L1MDa LINE L1 -6181 359 22 225 108 0 0 chr13 74880633 74880670 -26992499 + (TAA)n Simple_repeat Simple_repeat 2 38 0 40 0 0 0 chr13 74881293 74881333 -26991836 + AT_rich Low_complexity Low_complexity 1 40 0 213 200 56 11 chr13 74881340 74881430 -26991739 + (TA)n Simple_repeat Simple_repeat 2 95 0 1176 152 72 47 chr13 74881543 74881819 -26991350 + AluJo SINE Alu 9 291 -21 238 332 124 33 chr13 74881896 74882170 -26990999 + L2 LINE L2 3014 3312 -1 2292 107 0 3 chr13 74882385 74882695 -26990474 + AluSc SINE Alu 1 309 0 1108 228 8 111 chr13 74882964 74883342 -26989827 - L1MDa LINE L1 -6180 360 22 243 0 0 0 chr13 74883944 74883971 -26989198 + (TA)n Simple_repeat Simple_repeat 1 27 0 412 230 37 9 chr13 74883973 74884104 -26989065 - L1MCa LINE L1 -4983 1624 1289 773 289 80 31 chr13 74884758 74885105 -26988064 + MLT1D LTR MaLR 16 379 -126 2039 207 57 5 chr13 74885105 74885510 -26987659 - MSTB LTR MaLR 0 426 1 653 191 15 8 chr13 74885510 74885640 -26987529 + MLT1D LTR MaLR 375 505 0 234 243 45 45 chr13 74886609 74886720 -26986449 + MER5C DNA MER1_type 108 218 -106 2137 260 66 45 chr13 74886742 74887621 -26985548 + L1MB1 LINE L1 413 1226 -5087 1081 186 96 68 chr13 74887621 74887901 -26985268 + AluJo SINE Alu 1 288 -14 2137 260 66 45 chr13 74887901 74888484 -26984685 + L1MB1 LINE L1 1226 1795 -4518 21 0 0 0 chr13 74888749 74888770 -26984399 + AT_rich Low_complexity Low_complexity 1 21 0 835 156 0 46 chr13 74888887 74889060 -26984109 - SVA Other Other -710 676 512 623 221 109 51 chr13 74889081 74889393 -26983776 + L1MB1 LINE L1 2151 2480 -3904 1430 298 17 2 chr13 74889445 74889905 -26983264 + L1MB1 LINE L1 2464 2930 -3452 4781 220 42 29 chr13 74889914 74890250 -26982919 + L1MB1 LINE L1 4145 4475 -1929 315 0 0 0 chr13 74890250 74890285 -26982884 + (CA)n Simple_repeat Simple_repeat 1 35 0 4781 220 42 29 chr13 74890285 74890419 -26982750 + L1MB1 LINE L1 4475 4606 -1798 1030 239 57 52 chr13 74890419 74890788 -26982381 + MLT1A2 LTR MaLR 4 374 0 2671 297 50 74 chr13 74890792 74892191 -26980978 + MLT1A2-int LTR MaLR 5 1370 -1 1033 235 54 43 chr13 74892192 74892501 -26980668 + MLT1A2 LTR MaLR 1 305 -69 1653 177 6 54 chr13 74892501 74892818 -26980351 - AluJo SINE Alu -10 302 1 231 88 0 0 chr13 74892825 74892859 -26980310 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1033 235 54 43 chr13 74892859 74892911 -26980258 + MLT1A2 LTR MaLR 310 374 0 4781 220 42 29 chr13 74892911 74894584 -26978585 + L1MB1 LINE L1 4607 6336 -68 181 197 16 98 chr13 74894665 74894726 -26978443 - L2 LINE L2 -3166 148 93 343 213 176 9 chr13 74896382 74896490 -26976679 - MLT1F1 LTR MaLR -77 490 365 1367 270 29 5 chr13 74896592 74896970 -26976199 - L1MDa LINE L1 -6016 524 138 1148 186 38 15 chr13 74897397 74897640 -26975529 - MSTD LTR MaLR 0 396 184 485 314 8 0 chr13 74897881 74898005 -26975164 + L1MDa LINE L1 138 262 -6278 469 216 31 0 chr13 74898016 74898113 -26975056 - MSTD LTR MaLR -296 100 1 2325 178 35 43 chr13 74898395 74898917 -26974252 - L1MA10 LINE L1 -1 6333 5816 23 0 0 0 chr13 74899196 74899219 -26973950 + AT_rich Low_complexity Low_complexity 1 23 0 32 67 0 0 chr13 74899292 74899352 -26973817 + AT_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chr13 74900099 74900123 -26973046 + AT_rich Low_complexity Low_complexity 1 24 0 2402 67 0 3 chr13 74900487 74900787 -26972382 + AluY SINE Alu 1 299 -12 197 278 19 0 chr13 74901848 74901902 -26971267 - L2 LINE L2 -661 2653 2599 243 0 0 0 chr13 74902180 74902207 -26970962 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1581 142 75 0 chr13 74902215 74902469 -26970700 - AluSx SINE Alu -39 273 1 339 333 57 47 chr13 74902506 74902893 -26970276 - L2 LINE L2 -1056 2258 1868 730 304 136 32 chr13 74902909 74903372 -26969797 + L2 LINE L2 2424 2934 -380 22 0 0 0 chr13 74903623 74903645 -26969524 + AT_rich Low_complexity Low_complexity 1 22 0 182 302 47 47 chr13 74903831 74903917 -26969252 + L3 LINE CR1 1288 1373 -204 21 71 0 0 chr13 74904891 74904933 -26968236 + AT_rich Low_complexity Low_complexity 1 42 0 2072 144 91 10 chr13 74905516 74905911 -26967258 + MSTA LTR MaLR 2 428 0 21 36 0 0 chr13 74906325 74906353 -26966816 + AT_rich Low_complexity Low_complexity 1 28 0 4579 179 17 12 chr13 74907249 74908776 -26964393 + L1MA2 LINE L1 4610 6143 -161 1994 130 0 13 chr13 74908776 74909076 -26964093 + AluSx SINE Alu 1 296 -16 1513 255 34 29 chr13 74909297 74910006 -26963163 + L1MC/D LINE L1 4765 5478 -743 1785 230 40 15 chr13 74910015 74910505 -26962664 + MLT1D LTR MaLR 1 621 -3 183 146 0 0 chr13 74910590 74910631 -26962538 + (GA)n Simple_repeat Simple_repeat 2 42 0 3530 210 6 23 chr13 74911580 74912352 -26960817 + MER49 LTR ERV1 153 913 -10 182 432 0 0 chr13 74913315 74913403 -26959766 + MIR SINE MIR 53 140 -122 21 0 0 0 chr13 74914392 74914413 -26958756 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 74915724 74915745 -26957424 + AT_rich Low_complexity Low_complexity 1 21 0 602 202 9 0 chr13 74915825 74915934 -26957235 - MSTB LTR MaLR -316 110 1 * 653 191 15 8 chr13 74915934 74916064 -26957105 + MLT1D LTR MaLR 375 505 0 234 243 45 45 chr13 74917033 74917144 -26956025 + MER5C DNA MER1_type 108 218 -106 2151 264 64 43 chr13 74917166 74918044 -26955125 + L1M4c LINE L1 413 1226 -5087 1069 189 96 68 chr13 74918044 74918324 -26954845 + AluJo SINE Alu 1 288 -14 2151 264 64 43 chr13 74918324 74918907 -26954262 + L1M4c LINE L1 1226 1795 -4518 21 0 0 0 chr13 74919172 74919193 -26953976 + AT_rich Low_complexity Low_complexity 1 21 0 835 156 0 46 chr13 74919310 74919483 -26953686 - SVA Other Other -710 676 512 606 218 112 55 chr13 74919504 74919816 -26953353 + L1M4c LINE L1 2151 2480 -3904 1433 298 17 2 chr13 74919868 74920328 -26952841 + L1M4c LINE L1 2464 2930 -3452 1152 281 56 17 chr13 74920337 74920671 -26952498 + L1M4c LINE L1 4145 4504 -1878 279 0 0 0 chr13 74920671 74920702 -26952467 + (CA)n Simple_repeat Simple_repeat 1 31 0 1152 281 56 17 chr13 74920702 74920833 -26952336 + L1M4c LINE L1 4504 4628 -1754 1009 244 57 52 chr13 74920836 74921205 -26951964 + MLT1A2 LTR MaLR 4 374 0 2835 262 64 65 chr13 74921209 74922577 -26950592 + MLT1A2-int LTR MaLR 5 1370 -1 951 242 56 46 chr13 74922578 74922884 -26950285 + MLT1A2 LTR MaLR 1 309 -65 2372 90 0 0 chr13 74922887 74923188 -26949981 - AluY SINE Alu -10 301 1 262 254 148 104 chr13 74923195 74923533 -26949636 + L1M4c LINE L1 5089 5441 -941 314 0 49 0 chr13 74974295 74974336 -26898833 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1099 204 39 13 chr13 74974338 74974568 -26898601 - MER6 DNA MER2_type -547 318 83 284 185 0 15 chr13 74974599 74974664 -26898505 - Tigger2 DNA MER2_type -883 1835 1772 215 180 80 0 chr13 74975107 74975207 -26897962 + (TA)n Simple_repeat Simple_repeat 2 109 0 202 104 21 42 chr13 74975213 74975261 -26897908 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 215 306 10 10 chr13 74975264 74975362 -26897807 + (TA)n Simple_repeat Simple_repeat 2 99 0 2779 191 56 2 chr13 74975380 74975915 -26897254 + MER6A DNA MER2_type 37 600 -5 3782 133 29 75 chr13 74975937 74976660 -26896509 - Tigger2 DNA MER2_type 0 2718 2029 209 200 0 0 chr13 74977535 74977575 -26895594 + CT-rich Low_complexity Low_complexity 3 42 0 4758 190 27 24 chr13 74977679 74978289 -26894880 - L1MA7 LINE L1 -11 6280 5664 2514 127 6 0 chr13 74978289 74978651 -26894518 - THE1B LTR MaLR 0 364 1 4758 190 27 24 chr13 74978651 74979064 -26894105 - L1MA7 LINE L1 -627 5664 5254 1917 160 10 0 chr13 74979159 74979459 -26893710 + AluSx SINE Alu 1 303 -9 29 78 0 0 chr13 74979721 74979785 -26893384 + AT_rich Low_complexity Low_complexity 1 64 0 345 320 124 59 chr13 74979906 74980293 -26892876 + L1MEd LINE L1 400 811 -5308 999 313 139 9 chr13 74981095 74981642 -26891527 + L2 LINE L2 1729 2346 -968 426 280 28 35 chr13 74981643 74981764 -26891405 + MLT1E LTR MaLR 1 123 -470 2066 117 4 0 chr13 74981764 74982077 -26891092 + AluSg SINE Alu 1 314 0 426 280 28 35 chr13 74982077 74982097 -26891072 + MLT1E LTR MaLR 123 142 -451 3180 155 2 8 chr13 74982283 74982819 -26890350 - L1PA15 LINE L1 0 6165 5633 620 361 144 10 chr13 74982834 74983646 -26889523 + L2 LINE L2 2367 3297 -16 26 0 0 0 chr13 74983672 74983698 -26889471 + AT_rich Low_complexity Low_complexity 1 26 0 372 209 0 0 chr13 74984315 74984401 -26888768 + (TA)n Simple_repeat Simple_repeat 1 86 0 39 74 0 0 chr13 74984431 74984512 -26888657 + AT_rich Low_complexity Low_complexity 1 81 0 279 371 0 9 chr13 74984659 74984775 -26888394 + L2 LINE L2 3191 3305 -8 808 320 20 54 chr13 74984937 74985378 -26887791 + LTR16C LTR ERVL 66 491 0 378 0 0 0 chr13 74985381 74985423 -26887746 + (TC)n Simple_repeat Simple_repeat 1 42 0 186 43 0 0 chr13 74985434 74985457 -26887712 + (CA)n Simple_repeat Simple_repeat 1 23 0 329 331 27 22 chr13 74985555 74985739 -26887430 + LTR41 LTR ERVL 1 185 -588 334 165 37 46 chr13 74986127 74986236 -26886933 + LTR41 LTR ERVL 623 730 -43 30828 30 0 2 chr13 74986661 74991226 -26881943 + L1PA2 LINE L1 1636 6197 0 32 0 0 0 chr13 74991689 74991721 -26881448 + AT_rich Low_complexity Low_complexity 1 32 0 843 201 0 3 chr13 74991809 74992048 -26881121 + AluSx SINE Alu 1 302 -8 231 114 0 0 chr13 74992140 74992175 -26880994 + (TA)n Simple_repeat Simple_repeat 2 36 0 2617 213 14 53 chr13 74992335 74992464 -26880705 + L1MA8 LINE L1 5485 5617 -674 2497 66 0 0 chr13 74992464 74992769 -26880400 + AluY SINE Alu 1 305 -6 2617 213 14 53 chr13 74992769 74993099 -26880070 + L1MA8 LINE L1 5617 5910 -381 2092 175 25 2 chr13 74993099 74993493 -26879676 - MER57A LTR ERV1 0 403 1 2617 213 14 53 chr13 74993493 74993731 -26879438 + L1MA8 LINE L1 5910 6156 -135 21 36 0 0 chr13 74993949 74993977 -26879192 + AT_rich Low_complexity Low_complexity 1 28 0 192 40 0 0 chr13 74994118 74994143 -26879026 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 4726 24 0 0 chr13 74994171 74994717 -26878452 - L1PA3 LINE L1 -4 6151 5606 2614 117 0 3 chr13 74994740 74995116 -26878053 - THE1C LTR MaLR 0 375 1 345 390 39 18 chr13 74995782 74996067 -26877102 + L2 LINE L2 526 816 -2498 187 304 62 18 chr13 74996206 74996318 -26876851 + L2 LINE L2 1599 1715 -1599 25 0 0 0 chr13 74996347 74996372 -26876797 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr13 74996628 74996656 -26876513 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 827 291 9 9 chr13 74996690 74996913 -26876256 + LTR40a LTR ERVL 294 516 -3 4501 176 58 6 chr13 74998546 74999429 -26873740 - Tigger2 DNA MER2_type -1588 1130 202 180 0 0 0 chr13 74999467 74999487 -26873682 + (TA)n Simple_repeat Simple_repeat 2 21 0 268 188 0 0 chr13 74999495 74999543 -26873626 - Tigger2 DNA MER2_type -2667 51 4 1004 159 186 4 chr13 74999552 74999778 -26873391 + MER7A DNA MER2_type 2 266 -80 2149 107 0 10 chr13 74999955 75000264 -26872905 + AluSg SINE Alu 5 310 0 4896 120 22 0 chr13 75000827 75001561 -26871608 + L1PA8 LINE L1 5417 6166 -6 21 71 0 0 chr13 75001561 75001603 -26871566 + AT_rich Low_complexity Low_complexity 1 42 0 278 137 8 103 chr13 75003019 75003136 -26870033 + (TTATA)n Simple_repeat Simple_repeat 5 110 0 205 219 58 15 chr13 75003070 75003207 -26869962 + (TA)n Simple_repeat Simple_repeat 1 143 0 * 232 288 29 58 chr13 75003537 75003676 -26869493 + LTR68 LTR ERV1 314 448 -292 243 61 0 0 chr13 75004164 75004197 -26868972 + (TA)n Simple_repeat Simple_repeat 2 34 0 581 318 81 71 chr13 75004467 75004810 -26868359 - ERVL LTR ERVL -1424 4269 3931 2436 69 0 0 chr13 75004810 75005115 -26868054 - AluY SINE Alu -6 305 1 581 318 81 71 chr13 75005115 75005657 -26867512 - ERVL LTR ERVL -1762 3931 3313 276 260 40 20 chr13 75005753 75005853 -26867316 - ERVL LTR ERVL -2308 3177 3076 625 295 74 100 chr13 75005860 75006470 -26866699 - ERVL LTR ERVL -2159 2837 2244 900 340 37 54 chr13 75006572 75007542 -26865627 - ERVL LTR ERVL -2920 2076 1059 12435 217 25 11 chr13 75007959 75012347 -26860822 - L1PA16 LINE L1 0 6869 2386 1850 102 0 125 chr13 75012347 75012690 -26860479 + AluSq SINE Alu 1 300 -13 12435 217 25 11 chr13 75012690 75014103 -26859066 - L1PA16 LINE L1 -4483 2386 994 48 91 0 0 chr13 75014396 75014528 -26858641 + AT_rich Low_complexity Low_complexity 1 132 0 603 58 23 0 chr13 75014535 75014622 -26858547 + L1PA15-16 LINE L1 1964 2052 -4797 1124 269 90 43 chr13 75014644 75015233 -26857936 + MLT2F LTR ERVL 1 661 -2 500 324 40 48 chr13 75015426 75015621 -26857548 - LTR16A LTR ERVL -14 436 242 1395 242 133 26 chr13 75015621 75016088 -26857081 - LTR40a LTR ERVL 0 519 3 500 324 40 48 chr13 75016088 75016164 -26857005 - LTR16A LTR ERVL -208 242 167 205 308 24 95 chr13 75016951 75017120 -26856049 - MER5B DNA MER1_type -16 162 6 46 33 0 0 chr13 75018399 75018459 -26854710 + AT_rich Low_complexity Low_complexity 1 60 0 276 416 63 0 chr13 75020561 75020799 -26852370 - L2 LINE L2 -559 2755 2503 357 330 42 38 chr13 75021100 75021336 -26851833 + HAL1 LINE L1 496 732 -1775 1048 352 91 47 chr13 75021491 75022181 -26850988 + ERVL LTR ERVL 4051 4819 -945 1525 235 34 0 chr13 75022181 75022534 -26850635 + MLT1A1 LTR MaLR 1 365 0 1048 352 91 47 chr13 75022534 75023066 -26850103 + ERVL LTR ERVL 4819 5326 -438 334 394 86 18 chr13 75023301 75023639 -26849530 + LTR16A LTR ERVL 80 440 -10 834 197 27 14 chr13 75023771 75023994 -26849175 - L1MA7 LINE L1 0 6291 6066 315 0 0 0 chr13 75024344 75024379 -26848790 + (CA)n Simple_repeat Simple_repeat 2 36 0 1493 140 4 8 chr13 75024435 75024699 -26848470 - L1PB1 LINE L1 -1 6150 5888 28 29 0 0 chr13 75025935 75025970 -26847199 + AT_rich Low_complexity Low_complexity 1 35 0 366 333 72 46 chr13 75026678 75027153 -26846016 + L1 LINE L1 4350 4836 -1310 470 220 103 113 chr13 75027412 75027546 -26845623 - MER67D LTR ERV1 -5 509 375 2221 70 3 11 chr13 75027546 75027855 -26845314 - AluSq SINE Alu 0 313 11 470 220 103 113 chr13 75027855 75028002 -26845167 - MER67D LTR ERV1 -139 375 231 1459 198 26 9 chr13 75028026 75028374 -26844795 - L1MA3 LINE L1 0 6305 5952 1115 76 0 32 chr13 75028379 75028564 -26844605 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1286 192 7 54 chr13 75028568 75029010 -26844159 - AluJb SINE Alu 0 448 21 701 120 56 0 chr13 75029045 75029153 -26844016 - L1MA3 LINE L1 -362 5938 5825 3365 157 16 2 chr13 75029188 75029768 -26843401 - L1MA3 LINE L1 -369 5936 5349 979 185 39 15 chr13 75029773 75029978 -26843191 - MER67D LTR ERV1 -292 222 13 23 54 0 0 chr13 75030437 75030474 -26842695 + AT_rich Low_complexity Low_complexity 1 37 0 216 147 53 40 chr13 75030616 75030691 -26842478 + (TTATA)n Simple_repeat Simple_repeat 1 76 0 2163 146 19 26 chr13 75030926 75031351 -26841818 + L1MA4A LINE L1 5878 6299 -4 878 149 112 17 chr13 75031353 75031649 -26841520 + MER106B DNA MER1_type 562 885 -174 26 0 0 0 chr13 75031656 75031682 -26841487 + AT_rich Low_complexity Low_complexity 1 26 0 234 167 37 0 chr13 75032443 75032497 -26840672 + A-rich Low_complexity Low_complexity 2 57 0 252 86 0 0 chr13 75032612 75032647 -26840522 + (TG)n Simple_repeat Simple_repeat 2 36 0 62 52 0 0 chr13 75032671 75032768 -26840401 + AT_rich Low_complexity Low_complexity 1 97 0 26 50 0 0 chr13 75033063 75033103 -26840066 + AT_rich Low_complexity Low_complexity 1 40 0 186 300 46 85 chr13 75033202 75033223 -26839946 - MIR SINE MIR -115 147 127 2264 106 26 6 chr13 75033223 75033571 -26839598 - THE1A LTR MaLR 0 355 1 186 300 46 85 chr13 75033571 75033679 -26839490 - MIR SINE MIR -135 127 23 424 312 104 58 chr13 75035587 75035914 -26837255 + ERVL LTR ERVL 4128 4469 -1295 503 328 53 53 chr13 75036194 75036648 -26836521 + ERVL LTR ERVL 4853 5306 -458 372 209 0 0 chr13 75036679 75036770 -26836399 + GA-rich Low_complexity Low_complexity 1 91 0 1931 130 23 10 chr13 75038732 75039039 -26834130 + AluSx SINE Alu 1 311 -1 252 341 78 68 chr13 75039224 75039649 -26833520 - L2 LINE L2 -963 2351 1923 42222 36 22 3 chr13 75039650 75045679 -26827490 + L1PA3 LINE L1 1 6151 -4 192 40 0 0 chr13 75045707 75045732 -26827437 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr13 75045873 75045901 -26827268 + AT_rich Low_complexity Low_complexity 1 28 0 190 340 19 47 chr13 75046082 75046188 -26826981 - MIR SINE MIR -108 154 52 380 325 108 13 chr13 75046223 75046454 -26826715 - MIR SINE MIR -2 260 8 1925 123 4 0 chr13 75047557 75047895 -26825274 - AluSx SINE Alu 0 344 6 444 37 0 0 chr13 75048300 75048354 -26824815 + (CA)n Simple_repeat Simple_repeat 2 55 0 483 18 0 0 chr13 75048405 75048461 -26824708 + (CA)n Simple_repeat Simple_repeat 2 57 0 333 227 34 0 chr13 75049394 75049482 -26823687 - MLT1K LTR MaLR -17 571 481 3550 146 67 49 chr13 75049656 75049732 -26823437 + L1MA8 LINE L1 5462 5535 -756 1165 234 79 6 chr13 75049732 75050048 -26823121 - MER44D DNA MER2_type 0 609 1 3550 146 67 49 chr13 75050048 75050744 -26822425 + L1MA8 LINE L1 5535 6248 -43 188 143 24 0 chr13 75051218 75051260 -26821909 + (TA)n Simple_repeat Simple_repeat 2 44 0 30 59 0 0 chr13 75052504 75052555 -26820614 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr13 75052652 75052673 -26820496 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 75052807 75052830 -26820339 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr13 75053369 75053411 -26819758 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr13 75053450 75053482 -26819687 + AT_rich Low_complexity Low_complexity 1 32 0 375 23 0 0 chr13 75054130 75054174 -26818995 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr13 75055379 75055400 -26817769 + AT_rich Low_complexity Low_complexity 1 21 0 391 251 46 132 chr13 75055531 75055857 -26817312 + L2 LINE L2 3011 3308 -5 290 214 100 0 chr13 75056010 75056080 -26817089 + MIR SINE MIR 56 132 -130 24 53 0 0 chr13 75056332 75056370 -26816799 + AT_rich Low_complexity Low_complexity 1 38 0 213 240 0 0 chr13 75056451 75056501 -26816668 + T-rich Low_complexity Low_complexity 1 50 0 317 303 55 36 chr13 75057445 75057719 -26815450 - L1MCc LINE L1 -4892 1531 1253 1722 104 4 36 chr13 75057821 75058070 -26815099 - AluSq SINE Alu -64 249 9 1206 226 108 73 chr13 75058070 75058579 -26814590 + MLT1E1 LTR MaLR 29 555 -99 838 223 117 5 chr13 75058579 75058785 -26814384 + MLT1A1 LTR MaLR 13 241 -124 246 278 14 0 chr13 75058794 75058866 -26814303 + MLT1E1 LTR MaLR 580 652 -2 537 221 63 6 chr13 75059508 75059691 -26813478 - MER106B DNA MER1_type -44 1015 1 2382 234 19 10 chr13 75059725 75060158 -26813011 - LTR53 LTR ERVL 0 519 79 2229 118 25 22 chr13 75060158 75060521 -26812648 - THE1B LTR MaLR 0 364 1 2382 234 19 10 chr13 75060521 75060601 -26812568 - LTR53 LTR ERVL -440 79 1 21 0 0 0 chr13 75060785 75060806 -26812363 + AT_rich Low_complexity Low_complexity 1 21 0 1492 237 42 48 chr13 75061134 75061615 -26811554 + MLT1D LTR MaLR 1 478 -27 3019 187 48 18 chr13 75064010 75064674 -26808495 + L1MB1 LINE L1 5484 6167 -1 947 220 56 0 chr13 75066110 75066360 -26806809 - L1MA8 LINE L1 -1 6290 6027 2379 61 10 0 chr13 75066460 75066771 -26806398 - L1PA7 LINE L1 -122 6032 5719 1343 275 32 20 chr13 75066813 75067220 -26805949 + MLT1E2 LTR MaLR 215 626 0 2121 158 65 30 chr13 75067648 75068078 -26805091 - MER65A LTR ERV1 0 445 1 2057 104 19 13 chr13 75068956 75069143 -26804026 - AluY SINE Alu 0 311 120 206 0 0 65 chr13 75069143 75069174 -26803995 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2057 104 19 13 chr13 75069174 75069294 -26803875 - AluY SINE Alu -191 120 2 405 0 0 0 chr13 75069355 75069400 -26803769 + (CA)n Simple_repeat Simple_repeat 2 46 0 344 140 0 0 chr13 75069464 75069514 -26803655 - MSTA LTR MaLR 0 428 379 3003 232 19 41 chr13 75069521 75069845 -26803324 + L1MB8 LINE L1 5111 5441 -737 2278 77 0 6 chr13 75069845 75070157 -26803012 + AluY SINE Alu 1 310 -1 3003 232 19 41 chr13 75070157 75070382 -26802787 + L1MB8 LINE L1 5441 5669 -509 1564 150 111 13 chr13 75070382 75070689 -26802480 + MER1B DNA MER1_type 1 337 0 3003 232 19 41 chr13 75070689 75071146 -26802023 + L1MB8 LINE L1 5669 6097 -81 331 119 0 30 chr13 75071283 75071350 -26801819 + L1MB8 LINE L1 6110 6174 -4 245 329 13 13 chr13 75071926 75072005 -26801164 + MIR SINE MIR 86 164 -98 306 216 45 11 chr13 75072217 75072305 -26800864 - L1M4 LINE L1 -960 5186 5096 222 295 166 26 chr13 75072525 75072718 -26800451 + MIR SINE MIR 3 222 -40 24 32 0 0 chr13 75074014 75074045 -26799124 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 75074116 75074156 -26799013 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 75074223 75074245 -26798924 + AT_rich Low_complexity Low_complexity 1 22 0 1489 213 0 33 chr13 75074373 75074674 -26798495 + AluJo SINE Alu 1 291 -21 185 256 0 13 chr13 75074682 75074760 -26798409 + (TA)n Simple_repeat Simple_repeat 2 78 0 21 0 0 0 chr13 75074761 75074782 -26798387 + AT_rich Low_complexity Low_complexity 1 21 0 2601 196 96 29 chr13 75075268 75075926 -26797243 + L1MA6 LINE L1 5569 6270 -30 294 276 9 9 chr13 75075947 75076052 -26797117 + (TA)n Simple_repeat Simple_repeat 2 106 0 967 171 11 0 chr13 75077034 75077209 -26795960 - THE1C LTR MaLR 0 375 199 3430 99 70 72 chr13 75077210 75077836 -26795333 - THE1C-int LTR MaLR -955 625 1 2295 164 5 0 chr13 75077836 75078209 -26794960 - THE1C LTR MaLR 0 375 1 189 0 0 0 chr13 75078226 75078247 -26794922 + (TG)n Simple_repeat Simple_repeat 1 21 0 1654 142 8 8 chr13 75078318 75078572 -26794597 - AluSx SINE Alu -21 291 38 289 288 0 0 chr13 75078671 75078737 -26794432 - L2 LINE L2 -2 3311 3246 21 36 0 0 chr13 75078886 75078914 -26794255 + AT_rich Low_complexity Low_complexity 1 28 0 670 233 37 29 chr13 75080164 75080378 -26792791 + MER61D LTR ERV1 340 491 -10 5073 96 10 3 chr13 75080421 75081142 -26792027 + L1PA10 LINE L1 5440 6165 -3 2408 66 0 3 chr13 75081566 75081868 -26791301 + AluY SINE Alu 5 305 -6 41 48 0 0 chr13 75082055 75082117 -26791052 + AT_rich Low_complexity Low_complexity 1 62 0 210 250 17 0 chr13 75085154 75085214 -26787955 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 1991 148 3 0 chr13 75086013 75086316 -26786853 - AluSx SINE Alu -8 304 1 924 295 44 28 chr13 75087676 75088039 -26785130 + LTR40a LTR ERVL 124 492 -27 1055 168 0 21 chr13 75088109 75088299 -26784870 - AluJb SINE Alu 0 312 127 24 32 0 0 chr13 75088304 75088335 -26784834 + AT_rich Low_complexity Low_complexity 1 31 0 423 255 0 47 chr13 75088335 75088484 -26784685 - FLAM_A SINE Alu 0 142 1 275 122 0 68 chr13 75088732 75088786 -26784383 - L1MC4 LINE L1 -1350 6692 6643 1431 257 5 30 chr13 75088786 75089159 -26784010 + MLT1A1 LTR MaLR 2 365 0 275 122 0 68 chr13 75089159 75089178 -26783991 - L1MC4 LINE L1 -1399 6643 6624 1001 296 75 24 chr13 75089428 75089854 -26783315 + LTR40a LTR ERVL 46 493 -26 32 56 0 14 chr13 75089909 75089944 -26783225 + AT_rich Low_complexity Low_complexity 1 35 -35 521 224 26 9 chr13 75089944 75090060 -26783109 - FLAM_A SINE Alu -12 121 4 32 56 0 14 chr13 75090060 75090095 -26783074 + AT_rich Low_complexity Low_complexity 35 70 0 1459 161 72 58 chr13 75090103 75090463 -26782706 - L1MA4 LINE L1 -15 6285 5921 181 253 126 42 chr13 75090765 75090860 -26782309 - MIR SINE MIR -108 154 52 2453 113 3 16 chr13 75091534 75091914 -26781255 - THE1C LTR MaLR 0 375 1 228 111 0 0 chr13 75093667 75093703 -26779466 + (CA)n Simple_repeat Simple_repeat 1 36 0 3470 224 93 6 chr13 75093717 75094925 -26778244 - L1MB7 LINE L1 -7 6675 5370 245 384 34 20 chr13 75094952 75095098 -26778071 + MER21B LTR ERV1 24 171 -692 264 231 39 64 chr13 75095100 75095178 -26777991 + MER21A LTR ERV1 705 780 -151 1306 259 29 31 chr13 75095187 75095732 -26777437 - L1MB7 LINE L1 -1276 5368 4825 2776 287 32 15 chr13 75095779 75097141 -26776028 - L1MB7 LINE L1 -2630 4014 2630 2286 153 14 47 chr13 75097160 75097534 -26775635 + Tigger2a DNA MER2_type 7 365 -2343 2304 99 3 3 chr13 75097534 75097838 -26775331 + AluSq SINE Alu 1 304 -9 2286 153 14 47 chr13 75097838 75097906 -26775263 + Tigger2a DNA MER2_type 365 434 0 648 231 0 15 chr13 75097980 75098114 -26775055 - FLAM_C SINE Alu 0 133 2 2742 274 85 53 chr13 75098181 75100290 -26772879 - L1MB7 LINE L1 -4171 2475 212 205 266 11 43 chr13 75101265 75101359 -26771810 + (CATATA)n Simple_repeat Simple_repeat 4 94 0 593 356 110 9 chr13 75102092 75102562 -26770607 + L2 LINE L2 2629 3139 -174 240 331 48 21 chr13 75102928 75103073 -26770096 + L2 LINE L2 1625 1773 -1541 558 53 0 0 chr13 75103364 75103439 -26769730 - L1PA15-16 LINE L1 -4797 2052 1978 1595 122 0 0 chr13 75103450 75103704 -26769465 + AluSx SINE Alu 55 308 0 215 291 26 86 chr13 75103988 75104105 -26769064 + L2 LINE L2 3114 3223 -90 2514 43 0 7 chr13 75104648 75104952 -26768217 + AluY SINE Alu 1 302 -9 245 205 107 71 chr13 75106848 75106960 -26766209 + MLT1H LTR MaLR 411 526 -23 932 197 197 0 chr13 75107079 75107318 -26765851 + AluJo SINE Alu 12 297 -15 26 0 0 0 chr13 75107439 75107465 -26765704 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr13 75107508 75107551 -26765618 + AT_rich Low_complexity Low_complexity 1 43 0 2052 121 7 0 chr13 75107596 75107910 -26765259 - AluSx SINE Alu 0 316 1 282 56 0 0 chr13 75108037 75108080 -26765089 + (TTTA)n Simple_repeat Simple_repeat 1 79 0 282 56 0 0 chr13 75108080 75108116 -26765053 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1964 124 7 0 chr13 75108208 75108524 -26764645 + AluSp SINE Alu 1 318 0 336 247 0 25 chr13 75108545 75108626 -26764543 + MLT1E1 LTR MaLR 55 133 -521 1937 127 17 10 chr13 75109378 75109540 -26763629 - AluSx SINE Alu -10 302 136 2212 108 3 0 chr13 75109540 75109846 -26763323 - AluSx SINE Alu -3 309 3 1937 127 17 10 chr13 75109846 75109983 -26763186 - AluSx SINE Alu -176 136 1 440 193 9 0 chr13 75112479 75112593 -26760576 + (TA)n Simple_repeat Simple_repeat 1 115 0 2056 122 0 35 chr13 75115001 75115312 -26757857 + AluSg SINE Alu 1 300 -10 504 267 19 19 chr13 75115631 75115792 -26757377 - LTR41 LTR ERVL -604 169 9 254 310 16 70 chr13 75116198 75116385 -26756784 - ERVL LTR ERVL -366 5398 5222 231 88 0 0 chr13 75116395 75116429 -26756740 + (GA)n Simple_repeat Simple_repeat 1 34 0 405 235 50 0 chr13 75116766 75116885 -26756284 + MLT2D LTR ERVL 1 125 -289 617 250 98 36 chr13 75116903 75117179 -26755990 - L1MC4a LINE L1 -1648 6160 5868 687 87 9 17 chr13 75117221 75117336 -26755833 + (TCCCC)n Simple_repeat Simple_repeat 5 118 0 323 210 67 8 chr13 75117524 75117643 -26755526 - L1MC4a LINE L1 -2428 5380 5255 213 367 101 9 chr13 75117842 75117951 -26755218 - MIR SINE MIR -119 143 25 489 236 2 0 chr13 75119492 75119612 -26753557 - L1MA8 LINE L1 -290 5861 5743 21 0 0 0 chr13 75119726 75119747 -26753422 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 75119962 75119984 -26753185 + AT_rich Low_complexity Low_complexity 1 22 0 277 270 230 14 chr13 75121558 75121780 -26751389 - L1ME LINE L1 -368 5802 5533 268 203 73 41 chr13 75121865 75121988 -26751181 - L1ME LINE L1 -881 5410 5284 5500 19 0 5 chr13 75122422 75123063 -26750106 - L1PA3 LINE L1 0 6155 5518 254 175 87 48 chr13 75123143 75123246 -26749923 - L1ME LINE L1 -1288 4858 4752 26 50 0 0 chr13 75124480 75124520 -26748649 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr13 75124720 75124750 -26748419 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr13 75124844 75124880 -26748289 + AT_rich Low_complexity Low_complexity 1 36 0 613 275 38 5 chr13 75125051 75125342 -26747827 + L1MDa LINE L1 1889 2201 -4339 189 92 26 66 chr13 75125580 75125656 -26747513 + (TTA)n Simple_repeat Simple_repeat 2 74 0 2531 110 11 8 chr13 75125780 75126152 -26747017 - THE1C LTR MaLR -2 373 1 8417 155 52 12 chr13 75126152 75127672 -26745497 - THE1C-int LTR MaLR 0 1580 1 2497 125 3 8 chr13 75127672 75128049 -26745120 - THE1C LTR MaLR 0 375 1 366 217 0 0 chr13 75128467 75128536 -26744633 + MER52A LTR ERV1 1 69 -1686 * 4269 175 303 25 chr13 75128529 75129581 -26743588 + MER52A LTR ERV1 411 1755 0 198 323 15 0 chr13 75129602 75129667 -26743502 - L2 LINE L2 0 3313 3248 509 246 0 25 chr13 75129812 75129934 -26743235 - FAM SINE Alu -15 170 52 22 0 0 0 chr13 75130034 75130056 -26743113 + AT_rich Low_complexity Low_complexity 1 22 0 341 325 80 6 chr13 75130064 75130227 -26742942 + L1ME3 LINE L1 5944 6118 -44 478 389 8 4 chr13 75130295 75130547 -26742622 - L2 LINE L2 -337 2977 2725 365 340 108 41 chr13 75130809 75131421 -26741748 + L1MEc LINE L1 136 788 -5608 272 294 71 28 chr13 75131440 75131722 -26741447 + L1MEc LINE L1 834 1127 -5269 309 290 28 0 chr13 75131986 75132093 -26741076 - L1MEc LINE L1 -2540 3675 3566 2145 153 37 26 chr13 75132112 75132577 -26740592 - L1M2 LINE L1 -1378 4768 4299 * 2668 186 19 14 chr13 75132573 75133235 -26739934 + L1M2 LINE L1 4768 5436 -743 4932 197 30 4 chr13 75133253 75134981 -26738188 + L1MA5 LINE L1 4518 6289 -11 1351 285 85 55 chr13 75135002 75135375 -26737794 - L1MEc LINE L1 -2663 3552 3192 1771 150 32 4 chr13 75135375 75135655 -26737514 - AluJb SINE Alu -24 288 1 1351 285 85 55 chr13 75135655 75136962 -26736207 - L1MEc LINE L1 -3023 3192 1852 2060 116 0 0 chr13 75136962 75137261 -26735908 - AluY SINE Alu 0 305 7 1351 285 85 55 chr13 75137261 75137492 -26735677 - L1MEc LINE L1 -4363 1852 1629 16404 91 16 28 chr13 75137696 75140895 -26732274 + L1PA7 LINE L1 2968 6153 -1 21 0 0 0 chr13 75141011 75141032 -26732137 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr13 75141198 75141238 -26731931 + AT_rich Low_complexity Low_complexity 1 40 0 29 101 0 0 chr13 75141498 75141597 -26731572 + AT_rich Low_complexity Low_complexity 1 99 0 482 321 83 38 chr13 75141597 75141993 -26731176 - L2 LINE L2 -1089 2225 1812 23 54 0 0 chr13 75142165 75142202 -26730967 + AT_rich Low_complexity Low_complexity 1 37 0 524 257 83 12 chr13 75142580 75142907 -26730262 + L1M4 LINE L1 2271 2620 -3526 222 37 0 0 chr13 75143674 75143701 -26729468 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1493 188 3 38 chr13 75143704 75143996 -26729173 - AluJo SINE Alu -29 283 2 436 176 39 0 chr13 75144726 75144828 -26728341 - L1MB1 LINE L1 -1 6167 6062 509 294 0 37 chr13 75145513 75145700 -26727469 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 1717 176 3 10 chr13 75145747 75146048 -26727121 - AluJb SINE Alu -5 307 9 217 167 0 19 chr13 75146680 75146734 -26726435 + (TA)n Simple_repeat Simple_repeat 2 54 0 372 297 38 87 chr13 75148420 75148686 -26724483 + MIR SINE MIR 10 262 0 917 244 24 74 chr13 75148911 75149329 -26723840 + MLT2C1 LTR ERVL 1 397 0 216 0 0 0 chr13 75149498 75149522 -26723647 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 171 0 0 chr13 75149611 75149646 -26723523 + CT-rich Low_complexity Low_complexity 2 36 0 246 98 24 0 chr13 75150136 75150177 -26722992 + MSTC LTR MaLR 351 392 -36 2292 88 0 3 chr13 75150198 75150494 -26722675 - AluSc SINE Alu 0 309 15 749 271 55 13 chr13 75150567 75150803 -26722366 + L1MC4 LINE L1 6616 6861 -1181 594 141 0 20 chr13 75151530 75151629 -26721540 + MER4A LTR ERV1 1 97 -567 1580 148 3 78 chr13 75151639 75152004 -26721165 + MER4A LTR ERV1 269 664 0 21 57 0 0 chr13 75153115 75153150 -26720019 + AT_rich Low_complexity Low_complexity 1 35 0 366 207 11 0 chr13 75153933 75154020 -26719149 + L1MB4 LINE L1 6091 6178 -2 195 42 0 0 chr13 75154729 75154753 -26718416 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr13 75155671 75155699 -26717470 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 75156189 75156212 -26716957 + AT_rich Low_complexity Low_complexity 1 23 0 30 77 0 0 chr13 75156469 75156534 -26716635 + AT_rich Low_complexity Low_complexity 1 65 0 2243 109 0 0 chr13 75158570 75158882 -26714287 + AluSx SINE Alu 1 312 0 1387 129 23 138 chr13 75158914 75159262 -26713907 + AluYb8 SINE Alu 1 308 0 234 105 0 0 chr13 75159263 75159301 -26713868 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr13 75161422 75161450 -26711719 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr13 75161508 75161554 -26711615 + AT_rich Low_complexity Low_complexity 1 46 0 529 252 0 0 chr13 75161776 75161891 -26711278 + FLAM_A SINE Alu 9 123 -19 26 64 0 0 chr13 75162035 75162082 -26711087 + AT_rich Low_complexity Low_complexity 1 47 0 2238 84 0 0 chr13 75162461 75162768 -26710401 - AluY SINE Alu 0 307 1 449 278 56 35 chr13 75164166 75164364 -26708805 + L1MD2 LINE L1 19 220 -6320 1397 193 85 138 chr13 75164793 75165547 -26707622 - LTR8A LTR ERV1 0 691 1 4511 240 61 64 chr13 75165920 75169679 -26703490 + L1MD2 LINE L1 2991 6735 -18 30 83 0 0 chr13 75170048 75170120 -26703049 + AT_rich Low_complexity Low_complexity 1 72 0 1690 159 25 0 chr13 75171233 75171536 -26701633 + AluSx SINE Alu 1 310 0 8208 207 20 2 chr13 75171814 75173857 -26699312 - L1PA16 LINE L1 -615 5551 3477 3041 163 37 11 chr13 75173864 75174430 -26698739 + L1PA16 LINE L1 5576 6156 -10 23 54 0 0 chr13 75175076 75175113 -26698056 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr13 75175311 75175350 -26697819 + AT_rich Low_complexity Low_complexity 1 39 0 276 292 0 0 chr13 75176310 75176375 -26696794 + Tigger7 DNA MER2_type 101 165 -2322 1546 183 20 7 chr13 75176406 75176701 -26696468 + Tigger7 DNA MER2_type 2289 2587 0 24 0 0 0 chr13 75177483 75177507 -26695662 + AT_rich Low_complexity Low_complexity 1 24 0 203 313 0 0 chr13 75177673 75177753 -26695416 + (TA)n Simple_repeat Simple_repeat 1 80 0 2026 156 6 33 chr13 75178197 75178562 -26694607 + THE1A LTR MaLR 1 355 0 273 265 0 15 chr13 75178716 75178784 -26694385 + CT-rich Low_complexity Low_complexity 2 68 0 194 306 145 47 chr13 75181041 75181276 -26691893 - L2 LINE L2 -556 2758 2501 1866 125 64 10 chr13 75181436 75181732 -26691437 - AluSx SINE Alu 0 312 1 205 276 0 26 chr13 75182110 75182186 -26690983 + CT-rich Low_complexity Low_complexity 2 75 0 5948 160 67 9 chr13 75182950 75184110 -26689059 - Tigger3b DNA MER2_type -3 1228 1 29 47 0 0 chr13 75184200 75184243 -26688926 + AT_rich Low_complexity Low_complexity 1 43 0 2609 175 64 44 chr13 75184524 75185068 -26688101 - MER21A LTR ERV1 -1 930 376 1143 172 41 56 chr13 75185073 75185341 -26687828 - MER21A LTR ERV1 -667 264 1 307 325 53 0 chr13 75185363 75185477 -26687692 - MIR SINE MIR -78 184 65 8153 67 5 10 chr13 75185667 75186730 -26686439 + MER11C LTR ERVK 1 1057 -14 224 176 67 25 chr13 75186977 75187096 -26686073 + (TA)n Simple_repeat Simple_repeat 2 125 0 21 0 0 0 chr13 75187226 75187247 -26685922 + AT_rich Low_complexity Low_complexity 1 21 0 1967 113 143 6 chr13 75187277 75187613 -26685556 + MSTA LTR MaLR 45 426 -2 180 0 0 0 chr13 75188852 75188872 -26684297 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2200 88 0 23 chr13 75189877 75190182 -26682987 - AluSq SINE Alu -15 298 1 2236 121 0 0 chr13 75190819 75191126 -26682043 - AluSc SINE Alu -1 308 2 272 175 0 0 chr13 75191164 75191218 -26681951 - MLT2B1 LTR ERVL 0 520 391 205 182 0 0 chr13 75191219 75191252 -26681917 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 1715 216 18 55 chr13 75191254 75191636 -26681533 - MLT2D LTR ERVL -42 478 10 278 65 0 22 chr13 75193834 75193880 -26679289 + (CA)n Simple_repeat Simple_repeat 1 45 0 261 274 107 12 chr13 75193954 75194038 -26679131 + L2 LINE L2 2639 2730 -584 356 255 53 11 chr13 75194099 75194193 -26678976 + MER5A DNA MER1_type 92 189 0 264 320 102 48 chr13 75194268 75194621 -26678548 + L2 LINE L2 2841 3212 -101 21 36 0 0 chr13 75194760 75194788 -26678381 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 75195251 75195272 -26677897 + AT_rich Low_complexity Low_complexity 1 21 0 264 339 127 17 chr13 75195449 75195567 -26677602 + MIR3 SINE MIR 10 140 -68 21 0 0 0 chr13 75196504 75196525 -26676644 + AT_rich Low_complexity Low_complexity 1 21 0 387 135 0 125 chr13 75197983 75198022 -26675147 + MIR SINE MIR 126 168 -94 1951 138 7 7 chr13 75198022 75198320 -26674849 + AluSx SINE Alu 1 298 -14 387 135 0 125 chr13 75198320 75198384 -26674785 + MIR SINE MIR 168 216 -46 2234 139 17 6 chr13 75198397 75198757 -26674412 + THE1B LTR MaLR 1 364 0 481 284 68 62 chr13 75199138 75199600 -26673569 - MLT1F1 LTR MaLR -8 646 17 272 308 168 0 chr13 75200248 75200391 -26672778 - MER46C DNA MER2_type -15 323 157 231 294 47 12 chr13 75200470 75200555 -26672614 - MER46C DNA MER2_type -243 95 8 245 250 29 29 chr13 75200735 75200803 -26672366 + MIR SINE MIR 47 114 -148 2361 112 24 29 chr13 75201071 75201445 -26671724 + THE1C LTR MaLR 4 375 0 271 205 97 0 chr13 75201859 75201944 -26671225 + L1MC/D LINE L1 5683 5777 -393 26 30 0 0 chr13 75201956 75201989 -26671180 + AT_rich Low_complexity Low_complexity 1 33 0 8742 158 34 30 chr13 75203433 75205170 -26667999 - L1MA1 LINE L1 -316 5986 4257 2453 81 0 0 chr13 75205170 75205480 -26667689 - AluY SINE Alu -1 310 1 8742 158 34 30 chr13 75205480 75205875 -26667294 - L1MA1 LINE L1 -2045 4257 3838 2177 114 0 0 chr13 75205875 75206183 -26666986 + AluY SINE Alu 1 308 -3 8742 158 34 30 chr13 75206183 75206513 -26666656 - L1MA1 LINE L1 -2464 3838 3511 359 256 111 27 chr13 75206548 75206954 -26666215 - L1M4 LINE L1 -2945 3201 2762 955 171 30 5 chr13 75206965 75207164 -26666005 - L1MC1 LINE L1 -7 6720 6517 1757 228 138 0 chr13 75207164 75207599 -26665570 - L1MC1 LINE L1 -560 6178 5684 1387 196 25 56 chr13 75207598 75207956 -26665213 - L1MA9 LINE L1 0 6312 5966 * 3230 41 0 0 chr13 75208153 75208546 -26664623 - L1P LINE L1 -1231 4915 4523 3061 28 0 0 chr13 75208546 75208905 -26664264 + L1PA2 LINE L1 5792 6155 0 708 285 93 48 chr13 75208939 75210119 -26663050 - L1MC1 LINE L1 -3623 2917 1624 300 53 0 0 chr13 75210119 75210157 -26663012 + (TG)n Simple_repeat Simple_repeat 1 38 0 708 285 93 48 chr13 75210157 75210540 -26662629 - L1MC1 LINE L1 -4916 1624 1260 373 207 52 23 chr13 75211486 75211660 -26661509 + (TA)n Simple_repeat Simple_repeat 2 180 0 25 0 0 0 chr13 75211857 75211882 -26661287 + AT_rich Low_complexity Low_complexity 1 25 0 36 40 0 0 chr13 75213303 75213353 -26659816 + AT_rich Low_complexity Low_complexity 1 50 0 263 366 59 4 chr13 75213728 75213982 -26659187 - LTR33 LTR ERVL -19 502 235 29 28 0 0 chr13 75214260 75214296 -26658873 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr13 75214358 75214400 -26658769 + AT_rich Low_complexity Low_complexity 1 42 0 944 292 68 38 chr13 75214454 75215012 -26658157 + MER90 LTR ERV1 1 575 0 199 359 33 9 chr13 75215710 75215819 -26657350 + MIR SINE MIR 47 163 -45 22 0 0 0 chr13 75216073 75216095 -26657074 + AT_rich Low_complexity Low_complexity 1 22 0 347 302 114 0 chr13 75216699 75216848 -26656321 - MIR SINE MIR -15 247 82 301 313 90 14 chr13 75217024 75217168 -26656001 - L1MC4 LINE L1 -1339 6703 6549 22 0 0 0 chr13 75217361 75217383 -26655786 + AT_rich Low_complexity Low_complexity 1 22 0 217 205 0 0 chr13 75217670 75217709 -26655460 - MIR SINE MIR -74 188 150 1021 260 53 3 chr13 75219473 75219773 -26653396 - MER58B DNA MER1_type 0 341 27 903 285 4 13 chr13 75219784 75220019 -26653150 - MLT1D LTR MaLR -3 502 270 1479 106 8 29 chr13 75220216 75220461 -26652708 + L1MA3 LINE L1 6058 6297 -8 23 0 0 0 chr13 75220461 75220484 -26652685 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr13 75220537 75220579 -26652590 + AT_rich Low_complexity Low_complexity 1 42 0 1956 251 80 19 chr13 75221054 75221702 -26651467 - MER76 LTR ERV 0 688 1 878 277 55 11 chr13 75222547 75222818 -26650351 + LTR53 LTR ERVL 224 506 -13 306 0 0 0 chr13 75223159 75223193 -26649976 + (CA)n Simple_repeat Simple_repeat 2 35 0 368 310 99 71 chr13 75223715 75224080 -26649089 + L2 LINE L2 2913 3287 -26 335 295 47 7 chr13 75224826 75224975 -26648194 - MER103 DNA DNA -10 156 2 1375 219 86 50 chr13 75225413 75225857 -26647312 + MLT1C LTR MaLR 8 467 0 2261 53 3 3 chr13 75226071 75226376 -26646793 - AluY SINE Alu 0 305 1 814 266 72 19 chr13 75226409 75226719 -26646450 - L1ME1 LINE L1 -64 6102 5771 26 64 0 0 chr13 75228943 75228990 -26644179 + AT_rich Low_complexity Low_complexity 1 47 0 1311 247 57 3 chr13 75229270 75229639 -26643530 + MLT1B LTR MaLR 1 389 -1 1265 94 0 20 chr13 75229718 75229919 -26643250 - L1MA2 LINE L1 0 6304 6108 3961 173 113 84 chr13 75229927 75231168 -26642001 - MER52C LTR ERV1 0 1278 2 13656 168 37 25 chr13 75231168 75236621 -26636548 - L1MA2 LINE L1 -7 7716 1978 3725 75 0 16 chr13 75236621 75237130 -26636039 + L1PA4 LINE L1 5652 6152 -3 13656 168 37 25 chr13 75237130 75237452 -26635717 - L1MA2 LINE L1 -5745 1978 1662 2995 199 30 19 chr13 75237444 75238068 -26635101 - L1MA2 LINE L1 -6932 633 3 * 400 298 66 0 chr13 75238148 75238269 -26634900 - MIR SINE MIR -49 213 85 24 32 0 0 chr13 75238574 75238605 -26634564 + AT_rich Low_complexity Low_complexity 1 31 0 1170 257 47 25 chr13 75238655 75239496 -26633673 - L1ME1 LINE L1 -578 5588 4736 641 240 67 0 chr13 75239521 75239671 -26633498 + L1ME1 LINE L1 5594 5753 -413 893 200 103 103 chr13 75239671 75240061 -26633108 + MSTD LTR MaLR 5 394 -2 6068 249 72 29 chr13 75240063 75241719 -26631450 + MSTD-int LTR MaLR 1 1728 -7 731 236 101 75 chr13 75241725 75242111 -26631058 + MSTD LTR MaLR 1 396 0 1885 224 59 35 chr13 75242155 75242696 -26630473 + MLT2B3 LTR ERVL 1 554 0 2063 231 55 25 chr13 75242810 75243337 -26629832 + MLT2B3 LTR ERVL 12 554 0 767 275 25 84 chr13 75243343 75243736 -26629433 + L1ME1 LINE L1 5790 6159 -7 24 53 0 0 chr13 75244358 75244396 -26628773 + AT_rich Low_complexity Low_complexity 1 38 0 241 290 0 16 chr13 75245223 75245285 -26627884 + CT-rich Low_complexity Low_complexity 4 64 0 375 78 0 0 chr13 75245285 75245336 -26627833 + (CAT)n Simple_repeat Simple_repeat 3 53 0 1213 198 46 34 chr13 75245605 75245933 -26627236 + L1MA8 LINE L1 5960 6291 0 229 250 31 0 chr13 75246020 75246084 -26627085 + (CATA)n Simple_repeat Simple_repeat 3 68 0 257 254 32 0 chr13 75246541 75246604 -26626565 + MLT1I LTR MaLR 73 137 -272 2234 233 49 6 chr13 75246946 75247951 -26625218 - L1MB3 LINE L1 -4 6179 5099 954 329 93 61 chr13 75249133 75249551 -26623618 - L2 LINE L2 -6 3307 2904 189 0 0 0 chr13 75249551 75249572 -26623597 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 954 329 93 61 chr13 75249572 75250370 -26622799 - L2 LINE L2 -409 2904 2050 1059 260 170 27 chr13 75250373 75250815 -26622354 - MLT1D LTR MaLR 0 505 1 351 280 16 32 chr13 75250845 75250970 -26622199 - L2 LINE L2 -1509 1805 1683 619 348 67 13 chr13 75251098 75251414 -26621755 - LTR16C LTR ERVL -88 403 71 23 0 0 0 chr13 75252389 75252412 -26620757 + AT_rich Low_complexity Low_complexity 1 23 0 369 306 118 7 chr13 75252510 75252654 -26620515 + L2 LINE L2 247 406 -2908 1381 224 77 21 chr13 75252658 75253087 -26620082 - MLT1C LTR MaLR -7 460 8 1221 332 86 61 chr13 75253152 75254182 -26618987 + L2 LINE L2 418 1473 -1841 21 82 0 0 chr13 75254744 75254793 -26618376 + AT_rich Low_complexity Low_complexity 1 49 0 2514 117 8 0 chr13 75255936 75256295 -26616874 + THE1B LTR MaLR 3 364 0 416 312 82 45 chr13 75256357 75256687 -26616482 + L1MC4a LINE L1 4487 4828 -1318 293 282 152 74 chr13 75256912 75257345 -26615824 - MLT1H LTR MaLR -13 536 70 27 49 0 0 chr13 75257427 75257468 -26615701 + AT_rich Low_complexity Low_complexity 1 41 0 1985 121 13 7 chr13 75257645 75258135 -26615034 + AluSx SINE Alu 5 496 0 807 298 87 23 chr13 75258156 75258640 -26614529 + L1MC4a LINE L1 5340 5854 -1954 475 227 79 54 chr13 75258699 75258977 -26614192 + L1MC5 LINE L1 7601 7885 -76 221 175 0 0 chr13 75260111 75260151 -26613018 + (TA)n Simple_repeat Simple_repeat 1 40 0 236 258 0 30 chr13 75260349 75260415 -26612754 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 3000 129 11 2 chr13 75260429 75260894 -26612275 + L1PA13 LINE L1 5686 6154 -9 361 319 115 60 chr13 75261243 75261863 -26611306 + L1MC/D LINE L1 4256 4926 -1220 22 0 0 0 chr13 75261897 75261919 -26611250 + AT_rich Low_complexity Low_complexity 1 22 0 2043 126 0 7 chr13 75261961 75262270 -26610899 + AluSx SINE Alu 1 307 -5 1046 290 46 24 chr13 75262410 75262858 -26610311 + L1MC/D LINE L1 5268 5725 -781 1913 126 3 0 chr13 75262945 75263230 -26609939 + AluSx SINE Alu 25 310 -2 2345 99 3 0 chr13 75263973 75264285 -26608884 + AluSp SINE Alu 1 313 0 234 80 60 0 chr13 75264285 75264335 -26608834 + GA-rich Low_complexity Low_complexity 2 54 0 437 284 123 57 chr13 75264534 75265005 -26608164 - L1M4 LINE L1 -2868 3278 2777 24 32 0 0 chr13 75265005 75265036 -26608133 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr13 75267398 75267433 -26605736 + (A)n Simple_repeat Simple_repeat 1 35 0 686 346 26 39 chr13 75267443 75267911 -26605258 - HERVL LTR ERVL -1322 4332 3871 235 250 38 12 chr13 75267911 75267991 -26605178 - MER67D LTR ERV1 0 514 433 1432 229 27 21 chr13 75268062 75268502 -26604667 - MER67C LTR ERV1 -308 402 1 591 145 31 42 chr13 75268527 75268691 -26604478 + MER51A LTR ERV1 1 162 -215 * 2094 113 3 6 chr13 75268688 75268999 -26604170 + MER51B LTR ERV1 68 377 0 302 350 37 9 chr13 75269590 75269807 -26603362 - HERVL LTR ERVL -2805 2959 2737 204 40 0 0 chr13 75270118 75270143 -26603026 + (A)n Simple_repeat Simple_repeat 1 25 0 1677 251 52 14 chr13 75270360 75270861 -26602308 - MLT2B1 LTR ERVL 0 520 1 7856 189 56 30 chr13 75270861 75271503 -26601666 - ERVL-B1 LTR ERVL -7 5757 5133 1964 109 26 20 chr13 75271503 75271806 -26601363 + AluY SINE Alu 2 306 -5 7856 189 56 30 chr13 75271806 75272846 -26600323 - ERVL-B1 LTR ERVL -631 5133 4031 22 35 0 0 chr13 75272869 75272898 -26600271 + AT_rich Low_complexity Low_complexity 1 29 0 239 109 0 0 chr13 75273498 75273544 -26599625 + LTR66 LTR ERVL 394 439 -171 2516 150 21 7 chr13 75273634 75274055 -26599114 - MSTA LTR MaLR -1 427 1 232 165 11 44 chr13 75274055 75274146 -26599023 + (TA)n Simple_repeat Simple_repeat 1 88 0 260 266 11 53 chr13 75274174 75274268 -26598901 + L1MC4 LINE L1 6614 6703 -1339 890 208 6 6 chr13 75274473 75274641 -26598528 + FRAM SINE Alu 2 169 -7 395 256 167 21 chr13 75274743 75275168 -26598001 + L1ME3A LINE L1 5672 6170 0 22 0 0 0 chr13 75275492 75275514 -26597655 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr13 75275813 75275838 -26597331 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr13 75275877 75275909 -26597260 + AT_rich Low_complexity Low_complexity 1 32 0 247 324 9 46 chr13 75276271 75276379 -26596790 - MIR3 SINE MIR -13 195 92 425 172 20 0 chr13 75277748 75277847 -26595322 + L1PA15 LINE L1 6065 6165 0 3699 173 55 45 chr13 75277916 75278117 -26595052 + L1MC1 LINE L1 5421 5618 -715 2144 111 0 0 chr13 75278117 75278423 -26594746 + AluY SINE Alu 1 306 -5 3699 173 55 45 chr13 75278423 75279050 -26594119 + L1MC1 LINE L1 5618 6258 -75 26 74 0 0 chr13 75279116 75279170 -26593999 + AT_rich Low_complexity Low_complexity 1 54 0 396 358 97 39 chr13 75279170 75279332 -26593837 + L1M4 LINE L1 1217 1368 -5174 2231 95 0 19 chr13 75279332 75279649 -26593520 + AluY SINE Alu 1 311 0 396 358 97 39 chr13 75279649 75280053 -26593116 + L1M4 LINE L1 1368 1816 -4726 2074 239 35 42 chr13 75280534 75280636 -26592533 - MLT1E3 LTR MaLR -2 622 521 2415 73 3 0 chr13 75280636 75280938 -26592231 + AluSx SINE Alu 1 303 -9 2074 239 35 42 chr13 75280938 75281428 -26591741 - MLT1E3 LTR MaLR -103 521 34 350 289 140 25 chr13 75281526 75282039 -26591130 + L1M4 LINE L1 4498 5069 -1471 353 306 56 28 chr13 75282320 75282500 -26590669 + L1M4 LINE L1 5400 5584 -956 509 313 53 25 chr13 75282570 75282854 -26590315 - L1ME LINE L1 -347 5823 5532 633 254 0 0 chr13 75282880 75283006 -26590163 + MER82 DNA MER2_type 520 645 -8 215 79 26 0 chr13 75285600 75285638 -26587531 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 80 0 0 chr13 75286711 75286761 -26586408 + AT_rich Low_complexity Low_complexity 1 50 0 24 0 0 0 chr13 75287724 75287748 -26585421 + AT_rich Low_complexity Low_complexity 1 24 0 1483 213 32 0 chr13 75288092 75288374 -26584795 + AluJb SINE Alu 1 291 -21 22 70 0 0 chr13 75288764 75288807 -26584362 + AT_rich Low_complexity Low_complexity 1 43 0 22 80 0 0 chr13 75288995 75289045 -26584124 + AT_rich Low_complexity Low_complexity 1 50 0 245 242 8 0 chr13 75289342 75289470 -26583699 + (TA)n Simple_repeat Simple_repeat 2 130 0 323 313 142 9 chr13 75289558 75289791 -26583378 + L1M4c LINE L1 2284 2547 -3993 811 204 35 6 chr13 75289794 75289982 -26583187 - MER61D LTR ERV1 0 749 254 744 269 87 0 chr13 75290389 75290701 -26582468 + L1M4c LINE L1 2554 2892 -3648 684 274 107 13 chr13 75290773 75291251 -26581918 + L1M4c LINE L1 3317 3839 -2701 1750 163 21 75 chr13 75291262 75291360 -26581809 - MER47A DNA MER2_type -1957 366 264 1973 173 19 19 chr13 75291360 75291735 -26581434 - THE1C LTR MaLR 0 375 1 1750 163 21 75 chr13 75291735 75292023 -26581146 - MER47A DNA MER2_type -2059 264 1 1784 288 64 48 chr13 75292086 75292769 -26580400 + L1M4c LINE L1 3867 4576 -1964 314 23 0 23 chr13 75292769 75292813 -26580356 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1784 288 64 48 chr13 75292813 75293237 -26579932 + L1M4c LINE L1 4576 4992 -1548 1942 113 13 48 chr13 75293261 75293571 -26579598 + AluSx SINE Alu 1 299 -13 1944 189 112 62 chr13 75293656 75294355 -26578814 + MER50 LTR ERV1 1 734 0 25 31 0 0 chr13 75294360 75294392 -26578777 + AT_rich Low_complexity Low_complexity 1 32 0 2432 147 61 67 chr13 75294500 75295104 -26578065 + MER4B LTR ERV1 1 769 -10 390 250 0 138 chr13 75297810 75297998 -26575171 + MIR SINE MIR 30 191 -71 321 313 104 22 chr13 75298237 75298467 -26574702 - Charlie8 DNA MER1_type -2166 251 3 740 277 6 0 chr13 75298872 75299049 -26574120 - MER45A DNA AcHobo 0 178 1 279 275 12 0 chr13 75299654 75299734 -26573435 - L1ME LINE L1 -358 5804 5724 1778 111 4 4 chr13 75302305 75302549 -26570620 + AluSc SINE Alu 51 294 -15 27 49 0 0 chr13 75303271 75303312 -26569857 + AT_rich Low_complexity Low_complexity 1 41 0 2382 73 0 0 chr13 75306941 75307242 -26565927 + AluSc SINE Alu 1 301 -8 190 115 39 0 chr13 75307336 75307388 -26565781 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chr13 75307396 75307424 -26565745 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 75307658 75307680 -26565489 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 75307752 75307774 -26565395 + AT_rich Low_complexity Low_complexity 1 22 0 199 285 51 88 chr13 75308307 75308444 -26564725 + MIR SINE MIR 23 154 -108 32 57 0 0 chr13 75308986 75309039 -26564130 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 75309257 75309279 -26563890 + AT_rich Low_complexity Low_complexity 1 22 0 31 58 0 0 chr13 75309489 75309541 -26563628 + AT_rich Low_complexity Low_complexity 1 52 0 1685 180 20 0 chr13 75309666 75309972 -26563197 - AluJb SINE Alu 0 312 1 2142 189 49 5 chr13 75310339 75310747 -26562422 + MSTB LTR MaLR 1 426 0 1985 178 5 22 chr13 75311245 75311615 -26561554 - THE1B LTR MaLR 0 364 1 1442 273 152 40 chr13 75311744 75312780 -26560389 - L1MC4 LINE L1 -21 8021 6870 24 77 0 0 chr13 75314252 75314304 -26558865 + AT_rich Low_complexity Low_complexity 1 52 0 267 300 0 11 chr13 75314583 75314673 -26558496 + GA-rich Low_complexity Low_complexity 1 89 0 721 282 50 64 chr13 75315559 75316501 -26556668 + L1ME LINE L1 270 1207 -4873 24 32 0 0 chr13 75317151 75317182 -26555987 + AT_rich Low_complexity Low_complexity 1 31 0 26 74 0 0 chr13 75317410 75317464 -26555705 + AT_rich Low_complexity Low_complexity 1 54 0 2344 81 0 0 chr13 75317562 75317869 -26555300 - AluY SINE Alu -4 307 1 224 225 42 0 chr13 75318389 75318460 -26554709 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr13 75320056 75320078 -26553091 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr13 75321484 75321532 -26551637 + AT_rich Low_complexity Low_complexity 1 48 0 954 203 49 136 chr13 75321748 75322153 -26551016 - MLT1A2 LTR MaLR 0 374 5 685 262 124 28 chr13 75322213 75322699 -26550470 + LTR28 LTR ERV1 1 622 -141 381 337 25 6 chr13 75323598 75323761 -26549408 + LTR16A1 LTR ERVL 290 455 -2 1814 198 75 10 chr13 75323829 75324229 -26548940 + MSTB LTR MaLR 1 426 0 1380 244 36 34 chr13 75324686 75324783 -26548386 + MLT1B LTR MaLR 2 97 -293 454 128 26 0 chr13 75324783 75324861 -26548308 + MADE1 DNA Mariner 1 80 0 1380 244 36 34 chr13 75324861 75325149 -26548020 + MLT1B LTR MaLR 97 388 -2 194 300 0 0 chr13 75325275 75325315 -26547854 - MER5A DNA MER1_type -85 104 65 274 266 9 9 chr13 75325497 75325606 -26547563 - Charlie5 DNA MER1_type 0 2617 2509 2464 173 14 50 chr13 75325655 75326221 -26546948 - L1MA7 LINE L1 0 6291 5746 284 235 15 0 chr13 75326238 75326306 -26546863 - L1MA7 LINE L1 -537 5754 5686 758 206 0 26 chr13 75326314 75326514 -26546655 - FRAM SINE Alu 0 194 1 2121 191 32 1 chr13 75326514 75327188 -26545981 - L1MA7 LINE L1 -597 5694 5002 2059 189 40 0 chr13 75327188 75327563 -26545606 - MSTB1 LTR MaLR -2 430 41 335 140 0 0 chr13 75327608 75327665 -26545504 - L1MB2 LINE L1 -27 6144 6088 318 149 0 0 chr13 75327665 75327712 -26545457 - MSTB1 LTR MaLR -381 51 5 2139 220 4 6 chr13 75327715 75327770 -26545399 - L1MA7 LINE L1 -1137 5009 4955 1840 150 37 0 chr13 75327770 75327890 -26545279 + AluSq SINE Alu 1 115 -198 336 24 0 0 chr13 75327890 75327931 -26545238 + (CA)n Simple_repeat Simple_repeat 2 42 0 1840 150 37 0 chr13 75327931 75328104 -26545065 + AluSq SINE Alu 115 305 -8 2139 220 4 6 chr13 75328104 75328526 -26544643 - L1MA7 LINE L1 -1191 4955 4533 598 238 84 75 chr13 75328563 75328790 -26544379 - MLT1F LTR MaLR -313 229 1 1362 184 43 32 chr13 75329362 75329719 -26543450 - AluJo SINE Alu 0 362 3 363 193 34 11 chr13 75329805 75329893 -26543276 - MLT1-int LTR MaLR -770 601 512 35 0 0 0 chr13 75332722 75332757 -26540412 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr13 75332802 75332830 -26540339 + AT_rich Low_complexity Low_complexity 1 28 0 1441 120 40 18 chr13 75333400 75333625 -26539544 - MER30 DNA MER1_type 0 230 1 204 184 58 11 chr13 75333819 75333865 -26539304 + (TA)n Simple_repeat Simple_repeat 2 44 -48 1947 123 0 7 chr13 75333865 75334150 -26539019 + AluSc SINE Alu 2 284 -25 204 184 58 11 chr13 75334150 75334190 -26538979 + (TA)n Simple_repeat Simple_repeat 44 92 0 332 278 83 8 chr13 75334268 75334401 -26538768 + L1MEd LINE L1 896 1038 -5081 498 295 35 74 chr13 75334516 75335058 -26538111 + L1MEd LINE L1 1211 1731 -4579 22 0 0 0 chr13 75335200 75335222 -26537947 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 75335330 75335352 -26537817 + AT_rich Low_complexity Low_complexity 1 22 0 273 246 200 0 chr13 75335454 75335584 -26537585 + L1MEd LINE L1 2212 2367 -3762 238 251 100 78 chr13 75335699 75336030 -26537139 + L1M4 LINE L1 4529 4866 -1280 444 277 141 29 chr13 75338235 75338582 -26534587 - L1ME3A LINE L1 -9 6161 5776 2113 138 0 0 chr13 75338584 75338922 -26534247 + AluSq SINE Alu 1 338 0 498 254 93 25 chr13 75339106 75339386 -26533783 - L1MEc LINE L1 -3114 3101 2803 6130 152 26 20 chr13 75339419 75341555 -26531614 - L1MA3 LINE L1 -12 6293 4125 315 284 154 18 chr13 75341683 75341968 -26531201 - L1MEc LINE L1 -3528 2687 2364 2299 257 71 34 chr13 75342222 75343145 -26530024 - L1MD2 LINE L1 -221 6138 5184 339 289 75 6 chr13 75343403 75343562 -26529607 - HAL1 LINE L1 -828 1679 1510 235 373 27 9 chr13 75343654 75343764 -26529405 - LTR16A LTR ERVL -1 449 338 291 307 118 72 chr13 75344063 75344769 -26528400 - HAL1 LINE L1 -1112 1395 658 2045 137 134 8 chr13 75345562 75345942 -26527227 + MSTA LTR MaLR 1 428 0 219 114 0 0 chr13 75346163 75346198 -26526971 + (TA)n Simple_repeat Simple_repeat 1 35 0 35 83 0 0 chr13 75346411 75346495 -26526674 + AT_rich Low_complexity Low_complexity 1 84 0 359 308 66 22 chr13 75347333 75347467 -26525702 + HAL1 LINE L1 1466 1616 -891 3549 184 65 3 chr13 75347467 75348156 -26525013 + MER44D DNA MER2_type 2 605 0 359 308 66 22 chr13 75348156 75348248 -26524921 + HAL1 LINE L1 1616 1702 -805 490 301 201 36 chr13 75348278 75348915 -26524254 + HAL1 LINE L1 1761 2502 -5 3118 77 0 45 chr13 75349251 75349323 -26523846 - LTR7 LTR ERV1 -2 448 374 880 45 0 0 chr13 75349323 75349433 -26523736 - L1PA3 LINE L1 0 6155 6046 3118 77 0 45 chr13 75349433 75349828 -26523341 - LTR7 LTR ERV1 -76 374 2 201 94 0 0 chr13 75349828 75349860 -26523309 + (TA)n Simple_repeat Simple_repeat 1 32 0 229 255 0 0 chr13 75350104 75350170 -26522999 + (CA)n Simple_repeat Simple_repeat 1 66 0 190 204 0 74 chr13 75351699 75351753 -26521416 - L2 LINE L2 0 3313 3264 421 333 55 11 chr13 75352083 75352266 -26520903 - MLT1H1 LTR MaLR -364 191 1 241 196 0 0 chr13 75352770 75352826 -26520343 - L1MEc LINE L1 -4676 1720 1665 2493 134 9 39 chr13 75353067 75353506 -26519663 + MSTC LTR MaLR 1 426 -2 732 226 77 36 chr13 75353539 75353760 -26519409 + MER93a LTR ERV1 169 398 -4 226 235 147 49 chr13 75353779 75353881 -26519288 - LTR16A LTR ERVL -338 112 1 741 65 19 0 chr13 75354179 75354287 -26518882 + AluY SINE Alu 202 311 0 229 209 30 15 chr13 75355208 75355275 -26517894 + L1MC/D LINE L1 5384 5451 -908 3657 156 29 38 chr13 75355524 75356244 -26516925 + LTR8A LTR ERV1 1 714 -13 4372 159 17 7 chr13 75356415 75357133 -26516036 - MER50 LTR ERV1 -9 725 1 398 355 49 21 chr13 75357601 75357888 -26515281 + LTR16A1 LTR ERVL 1 295 -162 1312 227 17 10 chr13 75360297 75360597 -26512572 - L1MD3 LINE L1 -1026 6969 6668 582 252 80 21 chr13 75361097 75361335 -26511834 - LTR52 LTR ERVL -162 259 8 24 32 0 0 chr13 75361930 75361961 -26511208 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr13 75362179 75362206 -26510963 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 75363149 75363174 -26509995 + AT_rich Low_complexity Low_complexity 1 25 0 532 260 83 26 chr13 75363975 75364167 -26509002 + MLT1J LTR MaLR 155 357 -154 24 0 0 0 chr13 75364806 75364830 -26508339 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr13 75365024 75365048 -26508121 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 75365360 75365390 -26507779 + AT_rich Low_complexity Low_complexity 1 30 0 1696 138 8 0 chr13 75365574 75365834 -26507335 + AluSx SINE Alu 38 299 -13 360 303 40 26 chr13 75366119 75366271 -26506898 + MIR SINE MIR 104 257 -5 237 376 65 11 chr13 75366409 75366595 -26506574 + MIR SINE MIR 12 207 -55 1730 108 32 0 chr13 75366789 75367040 -26506129 - AluSq SINE Alu -16 297 39 1369 179 52 62 chr13 75368037 75368202 -26504967 - AluJb SINE Alu -22 290 125 258 32 0 0 chr13 75368202 75368233 -26504936 + (TTC)n Simple_repeat Simple_repeat 1 31 0 306 0 0 0 chr13 75368234 75368268 -26504901 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1369 179 52 62 chr13 75368268 75368391 -26504778 - AluJb SINE Alu -186 126 3 6128 233 28 50 chr13 75368981 75371106 -26502063 - L1PA12 LINE L1 -3672 3912 784 1958 109 6 63 chr13 75371106 75371437 -26501732 + AluSx SINE Alu 1 312 0 6128 233 28 50 chr13 75371437 75372204 -26500965 - L1PA12 LINE L1 -6800 784 2 24 0 0 0 chr13 75372718 75372742 -26500427 + AT_rich Low_complexity Low_complexity 1 24 0 1990 106 40 30 chr13 75374058 75374361 -26498808 - AluSx SINE Alu -6 306 1 240 86 0 0 chr13 75374415 75374450 -26498719 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1985 118 0 0 chr13 75374451 75374730 -26498439 - AluSq SINE Alu -34 279 1 428 211 90 64 chr13 75375083 75375239 -26497930 - MER3 DNA MER1_type -6 203 44 325 388 77 5 chr13 75375295 75375504 -26497665 + MIR SINE MIR 34 257 -5 191 376 63 28 chr13 75376522 75376809 -26496360 - L2 LINE L2 -465 2849 2553 23 33 0 0 chr13 75377294 75377324 -26495845 + AT_rich Low_complexity Low_complexity 1 30 0 297 135 0 0 chr13 75377519 75377571 -26495598 + (TG)n Simple_repeat Simple_repeat 1 52 0 1036 234 110 47 chr13 75377863 75378186 -26494983 - MSTB2 LTR MaLR -2 455 97 2270 88 10 10 chr13 75378186 75378492 -26494677 - AluSp SINE Alu -7 306 1 1036 234 110 47 chr13 75378492 75378596 -26494573 - MSTB2 LTR MaLR -360 97 1 197 333 15 15 chr13 75379147 75379213 -26493956 + MIR3 SINE MIR 128 193 -15 21 0 0 0 chr13 75379263 75379284 -26493885 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 75379884 75379907 -26493262 + AT_rich Low_complexity Low_complexity 1 23 0 485 342 88 56 chr13 75380134 75380870 -26492299 + L2 LINE L2 1239 1998 -1316 3521 231 133 35 chr13 75380945 75381500 -26491669 + L1MD1 LINE L1 963 1462 -5078 2024 86 4 0 chr13 75381500 75381757 -26491412 + AluY SINE Alu 42 299 -12 3521 231 133 35 chr13 75381757 75382463 -26490706 + L1MD1 LINE L1 1462 2097 -4443 234 0 0 0 chr13 75382463 75382489 -26490680 + (CA)n Simple_repeat Simple_repeat 1 26 0 3521 231 133 35 chr13 75382489 75382929 -26490240 + L1MD1 LINE L1 2097 2830 -3710 41 36 0 0 chr13 75382954 75383009 -26490160 + AT_rich Low_complexity Low_complexity 1 55 0 1872 229 51 55 chr13 75383018 75383835 -26489334 + L1MD1 LINE L1 5360 6179 -457 1930 114 50 0 chr13 75383835 75384116 -26489053 - AluSg SINE Alu -7 303 9 1872 229 51 55 chr13 75384116 75384160 -26489009 + L1MD1 LINE L1 6179 6222 -414 1983 114 0 62 chr13 75384160 75384485 -26488684 - AluSc SINE Alu -4 305 1 1872 229 51 55 chr13 75384485 75384543 -26488626 + L1MD1 LINE L1 6222 6270 -366 452 115 0 13 chr13 75384568 75384646 -26488523 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 1266 215 52 7 chr13 75384650 75384938 -26488231 + L1MD1 LINE L1 6316 6616 -20 182 419 57 19 chr13 75385205 75385310 -26487859 + L2 LINE L2 3132 3240 -32 856 235 95 20 chr13 75385312 75385606 -26487563 - MER33 DNA MER1_type 0 324 9 28 29 0 0 chr13 75385841 75385876 -26487293 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr13 75385953 75385997 -26487172 + AT_rich Low_complexity Low_complexity 1 44 0 187 311 115 8 chr13 75386288 75386410 -26486759 + MIR SINE MIR 30 164 -98 183 222 0 0 chr13 75386604 75386649 -26486520 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr13 75387433 75387457 -26485712 + AT_rich Low_complexity Low_complexity 1 24 0 464 166 61 0 chr13 75387883 75388184 -26484985 + (TA)n Simple_repeat Simple_repeat 1 319 0 29 0 0 0 chr13 75388185 75388214 -26484955 + AT_rich Low_complexity Low_complexity 1 29 0 1023 166 6 0 chr13 75388226 75388383 -26484786 - AluSg/x SINE Alu -22 290 133 21 36 0 0 chr13 75388636 75388664 -26484505 + AT_rich Low_complexity Low_complexity 1 28 0 508 234 70 75 chr13 75388777 75388991 -26484178 - MER58C DNA MER1_type 0 215 3 30 77 0 0 chr13 75389357 75389422 -26483747 + AT_rich Low_complexity Low_complexity 1 65 0 180 0 0 0 chr13 75389764 75389784 -26483385 + (A)n Simple_repeat Simple_repeat 1 20 0 22 56 0 0 chr13 75391396 75391432 -26481737 + AT_rich Low_complexity Low_complexity 1 36 0 184 329 25 38 chr13 75391636 75391715 -26481454 + L2 LINE L2 2881 2958 -314 2048 113 0 0 chr13 75391730 75392039 -26481130 - AluY SINE Alu 0 309 1 261 203 203 0 chr13 75392127 75392186 -26480983 + L1M4b LINE L1 11 81 -6778 1289 250 21 15 chr13 75392205 75392533 -26480636 + L1M4b LINE L1 641 970 -5889 28 29 0 0 chr13 75392931 75392966 -26480203 + AT_rich Low_complexity Low_complexity 1 35 0 2882 145 32 16 chr13 75394268 75394773 -26478396 + LTR64 LTR ERVK 1 513 0 2137 115 0 7 chr13 75395203 75395507 -26477662 + AluSg SINE Alu 3 304 -6 1118 211 86 29 chr13 75395604 75396188 -26476981 - MLT1E1 LTR MaLR 0 654 1 1336 165 28 116 chr13 75396660 75397023 -26476146 + MER44D DNA MER2_type 9 609 0 1121 171 0 90 chr13 75397205 75397439 -26475730 + AluJo SINE Alu 87 299 -13 21 36 0 0 chr13 75397594 75397622 -26475547 + AT_rich Low_complexity Low_complexity 1 28 0 181 304 196 20 chr13 75398427 75398529 -26474640 - MIR SINE MIR -94 168 49 265 318 7 36 chr13 75398557 75398756 -26474413 - L1M4 LINE L1 -1090 5056 4861 1457 314 126 12 chr13 75398891 75399462 -26473707 - MLT2F LTR ERVL -2 661 26 1519 186 54 13 chr13 75399533 75399840 -26473329 - LOR1b LTR ERV1 0 461 142 2107 163 39 34 chr13 75399840 75400388 -26472781 + MLT2A2 LTR ERVL 1 554 0 577 174 29 58 chr13 75400388 75400526 -26472643 - LOR1a LTR ERV1 -363 134 1 257 247 22 22 chr13 75400532 75400621 -26472548 + L1MC4 LINE L1 6615 6703 -1339 253 233 12 12 chr13 75400621 75400707 -26472462 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 205 339 8 24 chr13 75400722 75400846 -26472323 + (TA)n Simple_repeat Simple_repeat 1 122 0 1715 288 59 27 chr13 75400874 75402157 -26471012 - ERVL-F LTR ERVL -22 5742 4400 1841 277 67 55 chr13 75402157 75402977 -26470192 - ERVL-F LTR ERVL -2924 2840 2011 1990 172 5 11 chr13 75402977 75403349 -26469820 - L1PA12 LINE L1 -1380 4766 4397 5824 100 37 1 chr13 75403349 75404738 -26468431 + L1PA12 LINE L1 4752 6168 0 1204 320 29 11 chr13 75404744 75405187 -26467982 - ERVL-F LTR ERVL -3759 2005 1555 842 313 72 46 chr13 75405224 75405741 -26467428 - ERVL-F LTR ERVL -4285 1479 950 766 354 21 16 chr13 75405860 75406244 -26466925 - ERVL-F LTR ERVL -5062 702 317 291 292 46 46 chr13 75406369 75406499 -26466670 - ERVL-F LTR ERVL -5524 130 1 259 174 29 58 chr13 75406562 75406631 -26466538 - MLT2F LTR ERVL -115 548 482 21 71 0 0 chr13 75406807 75406849 -26466320 + AT_rich Low_complexity Low_complexity 1 42 0 347 0 23 0 chr13 75407093 75407136 -26466033 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2159 127 24 24 chr13 75407676 75408047 -26465122 - THE1C LTR MaLR -4 371 1 21 0 0 0 chr13 75408100 75408121 -26465048 + AT_rich Low_complexity Low_complexity 1 21 0 225 204 0 0 chr13 75408642 75408686 -26464483 + (TA)n Simple_repeat Simple_repeat 2 45 0 221 163 20 0 chr13 75409122 75409171 -26463998 + (TA)n Simple_repeat Simple_repeat 1 50 0 24 32 0 0 chr13 75409213 75409244 -26463925 + AT_rich Low_complexity Low_complexity 1 31 0 249 182 0 0 chr13 75409443 75409498 -26463671 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 31 0 0 chr13 75409625 75409657 -26463512 + AT_rich Low_complexity Low_complexity 1 32 0 501 17 0 0 chr13 75409958 75410016 -26463153 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 2220 167 82 4 chr13 75410024 75410485 -26462684 - LOR1a LTR ERV1 0 497 1 1626 132 179 74 chr13 75410494 75410858 -26462311 - MER4A LTR ERV1 -2 662 261 547 172 0 10 chr13 75410858 75410957 -26462212 - MER4A LTR ERV1 -566 98 1 282 219 0 0 chr13 75410979 75411043 -26462126 + (CA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr13 75411043 75411065 -26462104 + AT_rich Low_complexity Low_complexity 1 22 0 1646 229 41 76 chr13 75411270 75411851 -26461318 - L1ME1 LINE L1 -241 5925 5365 298 50 333 0 chr13 75411854 75411914 -26461255 - MADE1 DNA Mariner 0 80 1 1669 257 138 33 chr13 75411914 75413056 -26460113 - L1ME1 LINE L1 -782 5364 4104 18710 192 22 21 chr13 75414018 75419612 -26453557 - L1PA13 LINE L1 -3 6811 1033 3551 245 30 0 chr13 75419616 75420327 -26452842 - L1PA13 LINE L1 -6054 733 2 527 226 33 50 chr13 75421023 75421204 -26451965 - MER58 DNA MER1_type -1 2419 2242 671 279 69 38 chr13 75421490 75421752 -26451417 - MER58 DNA MER1_type -71 270 1 222 163 0 23 chr13 75422985 75423028 -26450141 + (TA)n Simple_repeat Simple_repeat 2 43 0 770 246 54 9 chr13 75423046 75423270 -26449899 - Charlie1 DNA MER1_type -2521 240 7 2528 52 0 7 chr13 75423408 75423716 -26449453 - AluY SINE Alu -5 306 1 23 116 0 0 chr13 75424439 75424560 -26448609 + AT_rich Low_complexity Low_complexity 1 121 0 1781 150 3 29 chr13 75425127 75425434 -26447735 - AluJb SINE Alu -7 305 7 23 101 0 0 chr13 75425614 75425693 -26447476 + AT_rich Low_complexity Low_complexity 1 79 0 236 296 158 54 chr13 75426080 75426283 -26446886 - L2 LINE L2 -164 3149 2926 1338 262 70 65 chr13 75426385 75427004 -26446165 + MLT1E2 LTR MaLR 1 622 -4 1834 110 0 4 chr13 75427470 75427716 -26445453 + AluSx SINE Alu 44 288 -24 27 92 0 0 chr13 75428046 75428122 -26445047 + AT_rich Low_complexity Low_complexity 1 76 0 1656 137 4 8 chr13 75428211 75428467 -26444702 + AluSx SINE Alu 14 268 -44 441 0 0 0 chr13 75428475 75428524 -26444645 + (TC)n Simple_repeat Simple_repeat 2 50 0 333 0 0 0 chr13 75428523 75428560 -26444609 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 28 0 0 0 chr13 75428705 75428733 -26444436 + AT_rich Low_complexity Low_complexity 1 28 0 1501 205 7 17 chr13 75428937 75429230 -26443939 - AluJo SINE Alu -22 290 1 22 80 0 0 chr13 75429866 75429916 -26443253 + AT_rich Low_complexity Low_complexity 1 50 0 321 26 0 0 chr13 75430498 75430536 -26442633 + (CA)n Simple_repeat Simple_repeat 2 39 0 53 40 0 0 chr13 75431372 75431446 -26441723 + AT_rich Low_complexity Low_complexity 1 74 0 2300 92 62 6 chr13 75431553 75431889 -26441280 + THE1A LTR MaLR 1 355 0 34 42 0 0 chr13 75431911 75431959 -26441210 + AT_rich Low_complexity Low_complexity 1 48 0 1040 44 7 7 chr13 75432105 75432242 -26440927 + L1PA5 LINE L1 6014 6150 -4 24 32 0 0 chr13 75432332 75432363 -26440806 + AT_rich Low_complexity Low_complexity 1 31 0 21 95 0 0 chr13 75433112 75433175 -26439994 + AT_rich Low_complexity Low_complexity 1 63 0 225 188 0 0 chr13 75433179 75433227 -26439942 + (TA)n Simple_repeat Simple_repeat 1 48 0 2035 109 0 7 chr13 75433234 75433518 -26439651 + AluSg SINE Alu 1 315 0 235 91 0 0 chr13 75433518 75433551 -26439618 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 2086 133 7 0 chr13 75433671 75433973 -26439196 + AluSx SINE Alu 1 304 -8 1522 189 16 78 chr13 75434056 75434419 -26438750 - MLT1A1 LTR MaLR 0 365 26 1458 189 90 23 chr13 75434419 75434720 -26438449 + MSTB LTR MaLR 1 321 -105 2131 143 25 25 chr13 75434720 75435083 -26438086 - THE1B LTR MaLR 0 364 2 11440 84 22 3 chr13 75435084 75436635 -26436534 - THE1B-int LTR MaLR 0 1580 1 1903 153 48 17 chr13 75436635 75436988 -26436181 - THE1B LTR MaLR 0 364 1 1600 173 3 14 chr13 75440337 75440621 -26432548 + AluJo SINE Alu 1 281 -31 701 90 60 0 chr13 75440634 75440767 -26432402 + GA-rich Low_complexity Low_complexity 4 144 0 289 220 165 0 chr13 75441197 75441288 -26431881 + Charlie7 DNA MER1_type 2174 2279 -333 211 333 71 8 chr13 75441690 75441816 -26431353 + MIR SINE MIR 129 262 0 28 61 0 0 chr13 75442772 75442821 -26430348 + AT_rich Low_complexity Low_complexity 1 49 0 503 212 51 8 chr13 75442899 75443017 -26430152 + L2 LINE L2 2434 2556 -758 37 76 0 0 chr13 75443222 75443301 -26429868 + AT_rich Low_complexity Low_complexity 1 79 0 555 16 0 0 chr13 75443488 75443552 -26429617 + (TG)n Simple_repeat Simple_repeat 1 64 0 29 28 0 0 chr13 75444034 75444070 -26429099 + AT_rich Low_complexity Low_complexity 1 36 0 42 86 0 0 chr13 75444254 75444359 -26428810 + AT_rich Low_complexity Low_complexity 1 105 0 1220 196 119 32 chr13 75444501 75444652 -26428517 - AluJo SINE Alu -2 310 174 2000 94 0 19 chr13 75444652 75444919 -26428250 - AluSq SINE Alu -16 297 36 1220 196 119 32 chr13 75444919 75445052 -26428117 - AluJo SINE Alu -138 174 1 939 150 277 27 chr13 75445120 75445420 -26427749 - THE1C LTR MaLR 0 375 1 553 242 25 37 chr13 75445644 75445805 -26427364 + L1MC4a LINE L1 6675 6833 -975 196 389 14 0 chr13 75445947 75446019 -26427150 - L2 LINE L2 0 3313 3241 24 0 0 0 chr13 75446310 75446334 -26426835 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 75446670 75446707 -26426462 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr13 75448862 75448890 -26424279 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 75448968 75448989 -26424180 + AT_rich Low_complexity Low_complexity 1 21 0 917 239 158 3 chr13 75449254 75449609 -26423560 - L1MD3 LINE L1 0 7995 7586 1251 163 36 24 chr13 75449609 75449942 -26423227 + MSTA LTR MaLR 1 387 -41 491 244 49 0 chr13 75450011 75450134 -26423035 - MLT1F1 LTR MaLR -434 133 5 3250 234 42 45 chr13 75450172 75450717 -26422452 - L1MD3 LINE L1 -14 6152 6619 222 91 0 0 chr13 75450717 75450750 -26422419 + (TG)n Simple_repeat Simple_repeat 2 34 0 3250 234 42 45 chr13 75450750 75451286 -26421883 - L1MD3 LINE L1 454 6620 6084 285 278 70 9 chr13 75451633 75451748 -26421421 - L2 LINE L2 -762 2552 2431 2855 9 0 0 chr13 75452684 75453001 -26420168 + AluYb8 SINE Alu 1 317 -1 24 32 0 0 chr13 75453461 75453492 -26419677 + AT_rich Low_complexity Low_complexity 1 31 0 2095 133 22 33 chr13 75453895 75454263 -26418906 - THE1B LTR MaLR 0 364 1 1748 94 14 160 chr13 75454310 75454659 -26418510 - THE1B LTR MaLR -2 362 84 5808 61 21 0 chr13 75454659 75455411 -26417758 + L1PA7 LINE L1 5383 6150 -4 1748 94 14 160 chr13 75455411 75455485 -26417684 - THE1B LTR MaLR -280 84 1 22 35 0 0 chr13 75455711 75455740 -26417429 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr13 75455813 75455843 -26417326 + AT_rich Low_complexity Low_complexity 1 30 0 449 357 43 33 chr13 75457980 75458284 -26414885 - L2 LINE L2 -225 3088 2782 1354 189 76 16 chr13 75458284 75458720 -26414449 - MLT2B1 LTR ERVL 0 515 3 297 353 156 25 chr13 75458720 75458995 -26414174 - L2 LINE L2 -525 2789 2479 23 0 0 0 chr13 75459170 75459193 -26413976 + AT_rich Low_complexity Low_complexity 1 23 0 267 201 23 58 chr13 75459362 75459536 -26413633 + (TTAA)n Simple_repeat Simple_repeat 3 170 0 1745 139 4 16 chr13 75459769 75460027 -26413142 + AluSx SINE Alu 3 257 -55 270 0 0 0 chr13 75460127 75460157 -26413012 + (A)n Simple_repeat Simple_repeat 1 30 0 898 232 87 42 chr13 75460721 75461053 -26412116 + MLT1D LTR MaLR 1 347 -158 2565 210 35 62 chr13 75461054 75461749 -26411420 - LTR8 LTR ERV1 0 691 16 4764 133 28 50 chr13 75461753 75462645 -26410524 + MER4D LTR ERV1 1 872 0 641 238 19 6 chr13 75462688 75462848 -26410321 + MLT1D LTR MaLR 344 505 0 1569 254 24 46 chr13 75462850 75463631 -26409538 + MLT1D-int LTR MaLR 4 650 -721 1239 261 21 136 chr13 75463695 75464468 -26408701 + MLT1D-int LTR MaLR 661 1344 -27 601 209 52 8 chr13 75464512 75464646 -26408523 + MLT1D LTR MaLR 22 161 -344 21 82 0 0 chr13 75464762 75464811 -26408358 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr13 75464999 75465024 -26408145 + AT_rich Low_complexity Low_complexity 1 25 0 1120 110 0 11 chr13 75465311 75465323 -26407846 + (GGAA)n Simple_repeat Simple_repeat 1 191 0 1120 110 0 11 chr13 75465323 75465505 -26407664 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 734 181 65 19 chr13 75466671 75466826 -26406343 - AluSq SINE Alu -15 298 137 181 140 180 0 chr13 75468259 75468309 -26404860 - MIR SINE MIR -106 156 98 1813 109 0 19 chr13 75468686 75468951 -26404218 - AluY SINE Alu -6 305 46 278 194 15 0 chr13 75469121 75469188 -26403981 + (TTATA)n Simple_repeat Simple_repeat 2 69 0 30 0 0 0 chr13 75469946 75469976 -26403193 + AT_rich Low_complexity Low_complexity 1 30 0 4784 84 17 41 chr13 75471293 75471998 -26401171 + LTR12 LTR ERV1 1 688 0 5484 218 21 7 chr13 75472432 75473868 -26399301 - L1PA12 LINE L1 -3595 3989 2529 1810 146 79 19 chr13 75473903 75474331 -26398838 + L1P4 LINE L1 5163 5613 -553 549 293 11 35 chr13 75474327 75474702 -26398467 - L1PA12 LINE L1 -5105 2469 2182 * 235 345 69 11 chr13 75475394 75475568 -26397601 - L1M2 LINE L1 -5903 946 763 * 1058 373 39 19 chr13 75475564 75476099 -26397070 - L1PA12 LINE L1 -6203 1371 823 225 0 0 0 chr13 75476099 75476124 -26397045 + (TG)n Simple_repeat Simple_repeat 1 25 0 1058 373 39 19 chr13 75476124 75476159 -26397010 - L1PA12 LINE L1 -6751 823 790 2490 60 0 0 chr13 75476278 75476577 -26396592 - AluY SINE Alu -12 299 1 2386 54 0 35 chr13 75476922 75477235 -26395934 + AluY SINE Alu 1 302 -9 24 0 0 0 chr13 75477266 75477290 -26395879 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 75479290 75479312 -26393857 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr13 75479614 75479648 -26393521 + (CA)n Simple_repeat Simple_repeat 2 35 0 1472 179 0 23 chr13 75480348 75480611 -26392558 - AluSq SINE Alu -54 259 3 207 88 0 0 chr13 75480622 75480656 -26392513 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 193 350 186 0 chr13 75481231 75481328 -26391841 - L2 LINE L2 0 3272 3158 784 129 0 5 chr13 75481654 75481836 -26391333 - L1MA8 LINE L1 -422 5869 5624 2260 102 0 9 chr13 75481842 75482157 -26391012 - AluSx SINE Alu 0 312 1 2300 143 51 38 chr13 75482166 75482635 -26390534 + L1MA7 LINE L1 5817 6291 0 535 254 10 27 chr13 75482666 75482829 -26390340 - MER110 LTR ERV1 -111 357 163 2729 174 19 70 chr13 75483157 75483802 -26389367 - LTR9 LTR ERV1 0 612 1 1236 207 10 54 chr13 75484132 75484328 -26388841 - AluJo SINE Alu -10 302 124 213 65 0 0 chr13 75484328 75484359 -26388810 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1236 207 10 54 chr13 75484359 75484476 -26388693 - AluJo SINE Alu -188 124 3 286 29 0 0 chr13 75484553 75484587 -26388582 + (TTTTC)n Simple_repeat Simple_repeat 2 65 0 1950 121 0 0 chr13 75484587 75484869 -26388300 - AluSx SINE Alu -1 315 1 2066 146 45 36 chr13 75485131 75485550 -26387619 + L1MA5 LINE L1 5876 6298 -2 227 250 47 14 chr13 75485730 75485878 -26387291 + (TA)n Simple_repeat Simple_repeat 1 153 0 849 241 171 98 chr13 75486655 75487227 -26385942 + LTR28 LTR ERV1 1 614 -406 330 26 0 0 chr13 75487260 75487299 -26385870 + (CA)n Simple_repeat Simple_repeat 1 39 0 41 0 0 0 chr13 75487433 75487474 -26385695 + AT_rich Low_complexity Low_complexity 1 41 0 440 99 14 0 chr13 75487494 75487565 -26385604 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 22 35 0 0 chr13 75487994 75488023 -26385146 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 75488279 75488304 -26384865 + AT_rich Low_complexity Low_complexity 1 25 0 37 81 0 0 chr13 75488550 75488636 -26384533 + AT_rich Low_complexity Low_complexity 1 86 0 10375 155 150 21 chr13 75489114 75489449 -26383720 - Tigger1 DNA MER2_type 0 2418 2128 2281 119 0 0 chr13 75489449 75489761 -26383408 - AluSx SINE Alu 0 312 1 10375 155 150 21 chr13 75489761 75491299 -26381870 - Tigger1 DNA MER2_type -290 2128 241 1829 176 17 0 chr13 75491299 75491595 -26381574 + AluJb SINE Alu 3 303 -9 10375 155 150 21 chr13 75491595 75491825 -26381344 - Tigger1 DNA MER2_type -2177 241 42 260 178 0 0 chr13 75491877 75491922 -26381247 - Tigger1 DNA MER2_type -2372 46 2 390 174 0 39 chr13 75492755 75492910 -26380259 + (TA)n Simple_repeat Simple_repeat 2 150 0 1182 214 43 33 chr13 75493231 75493530 -26379639 - AluJo SINE Alu 0 302 1 1807 215 8 20 chr13 75494043 75494438 -26378731 - L1MC3 LINE L1 -1038 6747 6358 2166 65 0 56 chr13 75494438 75494744 -26378425 - AluY SINE Alu -22 289 1 239 375 25 12 chr13 75495178 75495258 -26377911 + MER91A DNA MER1_type 116 196 0 33 103 0 0 chr13 75495323 75495440 -26377729 + AT_rich Low_complexity Low_complexity 1 117 0 38 22 0 0 chr13 75496399 75496444 -26376725 + AT_rich Low_complexity Low_complexity 1 45 0 2427 52 0 0 chr13 75496866 75497155 -26376014 + AluY SINE Alu 1 289 -22 512 177 73 0 chr13 75499312 75499436 -26373733 - L1MA7 LINE L1 0 6291 6159 1956 165 0 0 chr13 75500954 75501263 -26371906 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr13 75501470 75501491 -26371678 + AT_rich Low_complexity Low_complexity 1 21 0 670 199 281 20 chr13 75501706 75501902 -26371267 + AluSg1 SINE Alu 3 249 -60 6510 178 18 12 chr13 75502454 75504607 -26368562 + L1PA14 LINE L1 4000 6158 -3 570 333 106 62 chr13 75505831 75506267 -26366902 + L2 LINE L2 2859 3313 0 3065 173 33 8 chr13 75507047 75507682 -26365487 + L1MC1 LINE L1 5209 5859 -474 180 135 0 0 chr13 75507785 75507822 -26365347 + (A)n Simple_repeat Simple_repeat 1 37 0 2359 175 30 21 chr13 75508163 75508637 -26364532 + L1MC1 LINE L1 5856 6333 0 22 0 0 0 chr13 75510246 75510268 -26362901 + AT_rich Low_complexity Low_complexity 1 22 0 330 26 0 0 chr13 75511476 75511515 -26361654 + (TG)n Simple_repeat Simple_repeat 1 39 0 438 20 0 0 chr13 75511588 75511639 -26361530 + (TA)n Simple_repeat Simple_repeat 2 52 0 2025 134 18 52 chr13 75511650 75512038 -26361131 - THE1C LTR MaLR 0 375 1 1866 152 25 36 chr13 75512959 75512996 -26360173 + MER46B DNA MER2_type 1 37 -2694 2336 87 3 0 chr13 75512996 75513306 -26359863 + AluY SINE Alu 1 311 0 1866 152 25 36 chr13 75513306 75513631 -26359538 + MER46B DNA MER2_type 37 234 -2 2641 127 22 56 chr13 75514591 75515094 -26358075 + LTR19A LTR ERV1 1 486 0 1075 137 0 0 chr13 75515487 75515640 -26357529 + AluSp SINE Alu 137 289 -24 2336 191 23 49 chr13 75515660 75516188 -26356981 - MER67D LTR ERV1 0 514 1 234 0 0 0 chr13 75516664 75516690 -26356479 + (CAA)n Simple_repeat Simple_repeat 2 27 0 547 98 20 69 chr13 75516772 75516874 -26356295 + MER4E LTR ERV1 1 97 -682 204 163 0 0 chr13 75517042 75517085 -26356084 + (CA)n Simple_repeat Simple_repeat 2 44 0 550 293 164 83 chr13 75517689 75518070 -26355099 - LTR16A LTR ERVL -17 433 28 1478 197 13 0 chr13 75518501 75518801 -26354368 - L1MB1 LINE L1 0 6168 5865 1728 174 15 3 chr13 75518802 75519129 -26354040 + L1MB1 LINE L1 5561 5891 -298 414 376 47 21 chr13 75519179 75519602 -26353567 - ERVL LTR ERVL -727 5037 4604 700 316 43 4 chr13 75520603 75520837 -26352332 - LTR16A LTR ERVL -6 444 202 355 245 64 26 chr13 75521327 75521560 -26351609 + Zaphod DNA AcHobo 561 802 -3229 2150 98 7 0 chr13 75521761 75522048 -26351121 + AluSp SINE Alu 1 289 -24 24 67 0 0 chr13 75522048 75522093 -26351076 + AT_rich Low_complexity Low_complexity 1 45 0 628 205 8 16 chr13 75522421 75522548 -26350621 - LTR40a LTR ERVL -393 126 1 1025 231 69 26 chr13 75522551 75522941 -26350228 + Zaphod DNA AcHobo 3596 4002 -29 504 0 0 0 chr13 75524202 75524258 -26348911 + (TA)n Simple_repeat Simple_repeat 2 57 0 1914 151 7 3 chr13 75524258 75524557 -26348612 - AluSx SINE Alu -12 300 1 504 0 0 0 chr13 75524849 75524905 -26348264 + (TA)n Simple_repeat Simple_repeat 2 57 0 2020 141 7 0 chr13 75524905 75525203 -26347966 - AluSx SINE Alu -12 300 1 1704 226 56 60 chr13 75525245 75525869 -26347300 - L1M4 LINE L1 -1198 4948 4326 1498 191 24 13 chr13 75525869 75526167 -26347002 + AluSx SINE Alu 1 301 -11 1704 226 56 60 chr13 75526167 75526328 -26346841 - L1M4 LINE L1 -1820 4326 4166 265 119 24 0 chr13 75526432 75526474 -26346695 - L1MCc LINE L1 -6362 61 19 28 0 0 0 chr13 75528861 75528889 -26344280 + AT_rich Low_complexity Low_complexity 1 28 0 241 240 0 0 chr13 75529470 75529520 -26343649 + MLT1C LTR MaLR 220 269 -198 1326 196 48 93 chr13 75529579 75529967 -26343202 + MER67C LTR ERV1 3 399 -243 266 230 149 0 chr13 75530014 75530101 -26343068 + MER67D LTR ERV1 384 483 -31 537 299 129 19 chr13 75530107 75530378 -26342791 - L2 LINE L2 -2181 1133 833 1960 107 7 7 chr13 75530379 75530685 -26342484 + AluY SINE Alu 1 306 0 194 61 0 30 chr13 75531851 75531884 -26341285 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 21 0 0 0 chr13 75532058 75532079 -26341090 + AT_rich Low_complexity Low_complexity 1 21 0 1614 192 47 12 chr13 75532161 75532199 -26340970 + L1MA9 LINE L1 5745 5780 -532 276 77 0 0 chr13 75532199 75532238 -26340931 + (CA)n Simple_repeat Simple_repeat 2 40 0 1614 192 47 12 chr13 75532238 75532542 -26340627 + L1MA9 LINE L1 5780 6099 -213 2096 114 3 13 chr13 75532598 75532905 -26340264 + AluSg SINE Alu 1 304 -6 2100 125 20 0 chr13 75533516 75533812 -26339357 - AluSp SINE Alu -11 302 1 930 146 36 31 chr13 75533951 75534143 -26339026 + L1MA9 LINE L1 6120 6312 0 285 232 0 14 chr13 75534328 75534397 -26338772 - L1MC/D LINE L1 -2047 5761 5694 236 242 33 58 chr13 75534608 75534728 -26338441 - L1MC/D LINE L1 -946 5398 5282 22 0 0 0 chr13 75534927 75534949 -26338220 + AT_rich Low_complexity Low_complexity 1 22 0 1834 141 0 30 chr13 75535497 75535801 -26337368 + AluSx SINE Alu 1 295 -17 2109 112 3 10 chr13 75536191 75536494 -26336675 - AluY SINE Alu -10 301 1 22 0 0 0 chr13 75536761 75536783 -26336386 + AT_rich Low_complexity Low_complexity 1 22 0 385 260 71 24 chr13 75537261 75537388 -26335781 - MIR SINE MIR -13 249 117 3030 160 102 3 chr13 75537756 75538343 -26334826 + Tigger3b DNA MER2_type 1 645 -586 376 216 0 11 chr13 75538344 75538427 -26334742 + MLT2B1 LTR ERVL 47 128 -392 2441 144 20 2 chr13 75538427 75538824 -26334345 + MLT2A1 LTR ERVL 1 404 -40 204 158 0 0 chr13 75538827 75538865 -26334304 + (TA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr13 75538900 75538930 -26334239 + AT_rich Low_complexity Low_complexity 1 30 0 402 185 0 25 chr13 75538936 75539055 -26334114 + (TA)n Simple_repeat Simple_repeat 1 116 0 303 284 23 0 chr13 75539111 75539199 -26333970 + L1MC4 LINE L1 6614 6703 -1339 355 38 0 21 chr13 75539210 75539266 -26333903 + MLT2A2 LTR ERVL 390 453 0 14190 100 8 4 chr13 75539280 75541308 -26331861 + HERVL-A1 LTR ERVL 3421 5508 -256 744 94 0 0 chr13 75541308 75541414 -26331755 + (TA)n Simple_repeat Simple_repeat 2 107 0 14190 100 8 4 chr13 75541414 75541665 -26331504 + HERVL-A1 LTR ERVL 5508 5757 -7 2713 107 18 2 chr13 75541665 75542058 -26331111 + MLT2A1 LTR ERVL 1 399 -45 226 233 0 89 chr13 75542065 75542155 -26331014 + L1MC4 LINE L1 6614 6695 -1347 334 125 0 18 chr13 75542162 75542218 -26330951 + MLT2A1 LTR ERVL 390 444 0 1259 231 54 33 chr13 75542239 75542382 -26330787 + MLT2B1 LTR ERVL 181 320 -200 1547 171 0 57 chr13 75542382 75542697 -26330472 - AluJo SINE Alu -13 299 3 1259 231 54 33 chr13 75542697 75542886 -26330283 + MLT2B1 LTR ERVL 320 520 0 367 355 28 61 chr13 75543821 75543965 -26329204 + L2 LINE L2 2373 2520 -794 1901 141 0 46 chr13 75543965 75544292 -26328877 + AluSx SINE Alu 1 312 0 367 355 28 61 chr13 75544292 75544474 -26328695 + L2 LINE L2 2520 2688 -626 268 328 88 50 chr13 75544715 75544977 -26328192 - MLT1K LTR MaLR -220 368 97 845 175 87 19 chr13 75545253 75545459 -26327710 + AluJo SINE Alu 91 310 -2 24 0 0 0 chr13 75545687 75545711 -26327458 + AT_rich Low_complexity Low_complexity 1 24 0 262 277 12 12 chr13 75546627 75546710 -26326459 - L1MEd LINE L1 -5415 704 622 1781 189 52 47 chr13 75547556 75548102 -26325067 - MLT2A2 LTR ERVL -2 552 1 9925 110 8 5 chr13 75548102 75549532 -26323637 - HERVL-A2 LTR ERVL 0 5654 4221 2475 138 0 3 chr13 75549532 75549908 -26323261 - THE1C LTR MaLR 0 375 1 9007 134 16 61 chr13 75549908 75551187 -26321982 - THE1C-int LTR MaLR 0 1580 391 1939 138 3 3 chr13 75551187 75551484 -26321685 + AluSc SINE Alu 1 297 -12 9007 134 16 61 chr13 75551484 75551859 -26321310 - THE1C-int LTR MaLR -1189 391 1 2320 141 33 0 chr13 75551859 75552222 -26320947 - THE1C LTR MaLR 0 375 1 29 60 0 0 chr13 75553169 75553219 -26319950 + AT_rich Low_complexity Low_complexity 1 50 0 206 81 27 0 chr13 75553520 75553557 -26319612 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1073 8 0 0 chr13 75553558 75553678 -26319491 - L1PA2 LINE L1 -11 6144 6025 22 0 0 0 chr13 75553838 75553860 -26319309 + AT_rich Low_complexity Low_complexity 1 22 0 741 221 23 35 chr13 75555025 75555197 -26317972 + MLT1E LTR MaLR 40 209 -384 957 259 99 4 chr13 75555254 75555497 -26317672 + MLT1E LTR MaLR 328 593 0 5742 68 7 44 chr13 75555570 75556380 -26316789 - LTR17 LTR ERV1 0 780 1 800 196 7 0 chr13 75556789 75556937 -26316232 + AluJb SINE Alu 156 304 -8 241 341 0 0 chr13 75557033 75557115 -26316054 - MIR SINE MIR -114 148 67 29 47 0 0 chr13 75557356 75557399 -26315770 + AT_rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chr13 75557628 75557649 -26315520 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1298 214 10 32 chr13 75558266 75558575 -26314594 - AluJb SINE Alu -7 305 4 22 0 0 0 chr13 75559153 75559175 -26313994 + AT_rich Low_complexity Low_complexity 1 22 0 210 143 0 0 chr13 75560351 75560386 -26312783 + (T)n Simple_repeat Simple_repeat 1 35 0 6111 99 4 0 chr13 75560997 75561989 -26311180 - L1PA10 LINE L1 -5 6163 5175 651 120 0 0 chr13 75561989 75562097 -26311072 + L1P LINE L1 4392 4499 -1647 482 254 51 51 chr13 75562869 75563066 -26310103 + L2 LINE L2 3117 3313 0 331 267 67 7 chr13 75563596 75563746 -26309423 + Charlie1 DNA MER1_type 2603 2761 0 456 293 47 31 chr13 75564370 75564561 -26308608 + MIR SINE MIR 23 216 -46 5315 154 25 49 chr13 75565289 75566841 -26306328 - L1MA4A LINE L1 -11 6292 4778 28 48 0 0 chr13 75566985 75567027 -26306142 + AT_rich Low_complexity Low_complexity 1 42 0 830 104 32 0 chr13 75567138 75567263 -26305906 - L1P5 LINE L1 -424 5732 5604 21 82 0 0 chr13 75569580 75569629 -26303540 + AT_rich Low_complexity Low_complexity 1 49 0 3231 137 4 4 chr13 75569726 75570223 -26302946 + LOR1a LTR ERV1 1 497 0 1787 189 61 5 chr13 75570367 75570795 -26302374 + L1 LINE L1 3334 3785 -2361 2873 220 30 14 chr13 75570809 75571532 -26301637 + L1 LINE L1 3999 4733 -1413 1810 245 90 24 chr13 75571532 75572147 -26301022 + MER50 LTR ERV1 1 686 -48 233 271 0 0 chr13 75572171 75572230 -26300939 + L1 LINE L1 4729 4787 -1359 292 271 0 35 chr13 75572580 75572665 -26300504 + MLT1J LTR MaLR 137 218 -293 2064 78 4 4 chr13 75573169 75573438 -26299731 - AluSg SINE Alu -3 307 39 275 221 248 44 chr13 75573452 75573565 -26299604 + MER39 LTR ERV1 5 140 -567 * 443 217 101 8 chr13 75573559 75573688 -26299481 + LTR48 LTR ERV1 209 349 -438 254 91 0 0 chr13 75573755 75573788 -26299381 + LTR48B LTR ERV1 364 396 -248 * 493 229 18 48 chr13 75573786 75574004 -26299165 + MER39 LTR ERV1 579 707 0 4219 113 12 3 chr13 75574472 75575117 -26298052 - L1PA13 LINE L1 0 6163 5513 1537 216 52 54 chr13 75575118 75575400 -26297769 + LTR49-int LTR ERV1 305 302 -4634 480 48 0 0 chr13 75575400 75575463 -26297706 + (TA)n Simple_repeat Simple_repeat 2 64 0 1537 216 52 54 chr13 75575463 75575770 -26297399 + LTR49-int LTR ERV1 301 607 -4329 2624 77 201 169 chr13 75575902 75576615 -26296554 - LTR12 LTR ERV1 0 1683 31 2330 227 69 25 chr13 75577528 75578137 -26295032 + MER92B LTR ERV1 1 636 0 428 223 68 0 chr13 75578137 75578240 -26294929 + L1MD3 LINE L1 7876 7985 -10 26 0 0 0 chr13 75578287 75578313 -26294856 + AT_rich Low_complexity Low_complexity 1 26 0 419 186 0 72 chr13 75578933 75579030 -26294139 + MER20 DNA MER1_type 125 214 -5 627 66 33 16 chr13 75579550 75579671 -26293498 + (TCTA)n Simple_repeat Simple_repeat 2 124 0 2375 237 42 33 chr13 75579675 75580409 -26292760 + L1ME1 LINE L1 5376 6116 -50 26 0 0 0 chr13 75581087 75581113 -26292056 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 75581527 75581548 -26291621 + AT_rich Low_complexity Low_complexity 1 21 0 3023 242 69 25 chr13 75581910 75582851 -26290318 + Charlie1a DNA MER1_type 32 1013 -442 9673 113 3 2 chr13 75582953 75584313 -26288856 - THE1A-int LTR MaLR -219 1361 1 2113 124 32 11 chr13 75584313 75584661 -26288508 - THE1A LTR MaLR 0 355 1 3750 190 38 36 chr13 75584665 75585546 -26287623 + L1MB1 LINE L1 5254 6135 -33 2020 117 7 0 chr13 75585546 75585827 -26287342 + AluSc SINE Alu 1 283 -26 234 0 0 0 chr13 75585831 75585857 -26287312 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr13 75586442 75586470 -26286699 + AT_rich Low_complexity Low_complexity 1 28 0 455 272 57 63 chr13 75586515 75586673 -26286496 + MER5B DNA MER1_type 2 158 -20 256 333 0 0 chr13 75586683 75586752 -26286417 + HERV16 LTR ERVL 2837 2905 -2091 991 172 69 17 chr13 75586753 75587110 -26286059 + MER65B LTR ERV1 1 445 0 360 176 82 0 chr13 75587791 75587876 -26285293 + LOR1b LTR ERV1 53 144 -317 2065 192 0 38 chr13 75588271 75588692 -26284477 + LOR1a LTR ERV1 90 494 -3 1695 203 10 0 chr13 75588695 75588995 -26284174 + LOR1a-int LTR ERV1 1 303 -7817 2397 88 2 180 chr13 75588998 75589519 -26283650 + THE1C-int LTR MaLR 1153 1580 0 1415 132 63 41 chr13 75589519 75589846 -26283323 + THE1C LTR MaLR 1 375 0 279 79 0 0 chr13 75590033 75590071 -26283098 + (GA)n Simple_repeat Simple_repeat 2 39 0 440 161 0 12 chr13 75590177 75590258 -26282911 + LOR1a-int LTR ERV1 451 530 -7590 305 254 0 0 chr13 75590289 75590352 -26282817 + LOR1a-int LTR ERV1 527 589 -7531 1690 140 3 38 chr13 75591972 75592265 -26280904 + AluSg SINE Alu 1 283 -27 445 291 12 23 chr13 75592757 75592929 -26280240 + HERV9 LTR ERV1 5375 5544 -2855 453 165 59 0 chr13 75592954 75593039 -26280130 - LTR48 LTR ERV1 -124 663 574 907 224 155 22 chr13 75593164 75593441 -26279728 - LTR48 LTR ERV1 -473 314 1 832 216 56 86 chr13 75593529 75593797 -26279372 - LTR48-int LTR ERV1 -158 6173 5914 3178 171 46 21 chr13 75593832 75594511 -26278658 - LTR48-int LTR ERV1 -494 5837 5142 474 173 71 39 chr13 75594517 75594693 -26278476 - AluY SINE Alu 0 333 154 2470 213 36 52 chr13 75594720 75595392 -26277777 - LTR49-int LTR ERV1 -3230 3101 2441 1082 266 10 71 chr13 75595717 75596023 -26277146 - LTR49-int LTR ERV1 -4060 2271 1985 458 175 0 0 chr13 75596023 75596103 -26277066 + LTR12 LTR ERV1 1 80 -634 414 178 0 0 chr13 75596324 75596414 -26276755 + GA-rich Low_complexity Low_complexity 2 91 0 7725 133 2 2 chr13 75597407 75598634 -26274535 - L1PA8A LINE L1 -822 5324 4097 2189 79 3 0 chr13 75598632 75598923 -26274246 + L1PA8A LINE L1 5324 5615 -516 * 585 104 0 0 chr13 75598917 75598994 -26274175 - L1P LINE L1 -1973 4173 4097 * 272 188 0 0 chr13 75598992 75599040 -26274129 + L1PA8A LINE L1 5324 5371 -784 * 3638 99 4 17 chr13 75599040 75599574 -26273595 + L1PA8A LINE L1 5605 6131 0 24 0 0 0 chr13 75599876 75599900 -26273269 + AT_rich Low_complexity Low_complexity 1 24 0 243 255 0 0 chr13 75600482 75600533 -26272636 - MIR SINE MIR -65 143 93 300 27 0 0 chr13 75600956 75600993 -26272176 + (TG)n Simple_repeat Simple_repeat 1 37 0 195 303 126 46 chr13 75601230 75601405 -26271764 - L2 LINE L2 -604 2710 2522 295 260 39 10 chr13 75601590 75601694 -26271475 - L1MEd LINE L1 -4914 1205 1099 431 296 66 15 chr13 75602742 75602938 -26270231 - MLT1K LTR MaLR -2 586 381 2488 223 47 17 chr13 75604390 75604995 -26268174 - MLT1E3 LTR MaLR -2 609 1 16898 169 48 37 chr13 75605213 75606942 -26266227 + L1M1 LINE L1 13 1721 -5844 288 0 0 0 chr13 75606942 75606974 -26266195 + (CA)n Simple_repeat Simple_repeat 1 32 0 16898 169 48 37 chr13 75606974 75607153 -26266016 + L1M1 LINE L1 1721 1896 -5669 2125 74 0 0 chr13 75607153 75607432 -26265737 + AluY SINE Alu 28 306 0 16898 169 48 37 chr13 75607432 75608850 -26264319 + L1M1 LINE L1 1896 3379 -4186 516 157 46 9 chr13 75608837 75608945 -26264224 + L1MA2 LINE L1 5777 5888 -416 * 2004 135 18 3 chr13 75608954 75609294 -26263875 + L1MA2 LINE L1 5960 6304 0 717 302 81 59 chr13 75609450 75610311 -26262858 - HAL1 LINE L1 -31 2476 1597 517 301 42 69 chr13 75610636 75610898 -26262271 + MIR SINE MIR 8 262 0 376 228 139 0 chr13 75612344 75612445 -26260724 + MIR SINE MIR 117 231 -31 241 151 85 19 chr13 75612487 75612593 -26260576 + (TA)n Simple_repeat Simple_repeat 1 113 0 1977 138 19 28 chr13 75613340 75613702 -26259467 - L1PB4 LINE L1 0 6156 5798 799 228 97 10 chr13 75613727 75614017 -26259152 - L1PB4 LINE L1 -834 5312 4998 1462 209 18 23 chr13 75614082 75614474 -26258695 - L1PB4 LINE L1 -1888 4258 3869 2518 66 0 0 chr13 75614649 75614952 -26258217 - AluY SINE Alu -8 303 1 26 0 0 0 chr13 75615275 75615301 -26257868 + AT_rich Low_complexity Low_complexity 1 26 0 189 286 61 20 chr13 75615586 75615684 -26257485 - MIR SINE MIR -74 188 87 2342 66 0 47 chr13 75616029 75616348 -26256821 + AluY SINE Alu 1 304 -7 320 308 20 9 chr13 75616354 75616462 -26256707 + MIR SINE MIR 7 117 -91 425 72 0 29 chr13 75616487 75616556 -26256613 - L1PA6 LINE L1 -2 6152 6086 2250 53 67 0 chr13 75617172 75617456 -26255713 + AluY SINE Alu 1 303 -8 21 0 0 0 chr13 75617497 75617518 -26255651 + AT_rich Low_complexity Low_complexity 1 21 0 463 234 39 16 chr13 75617546 75617674 -26255495 - MIR SINE MIR -1 261 131 194 266 0 47 chr13 75617775 75617839 -26255330 + L3 LINE CR1 1368 1428 -149 26 0 0 0 chr13 75619330 75619356 -26253813 + AT_rich Low_complexity Low_complexity 1 26 0 252 167 0 0 chr13 75619406 75619454 -26253715 + (TA)n Simple_repeat Simple_repeat 1 48 0 35 24 0 0 chr13 75620498 75620540 -26252629 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 75623200 75623228 -26249941 + AT_rich Low_complexity Low_complexity 1 28 0 182 316 127 0 chr13 75623346 75623425 -26249744 + L2 LINE L2 113 201 -3113 207 162 0 0 chr13 75623870 75623907 -26249262 + (CA)n Simple_repeat Simple_repeat 1 37 0 5806 144 9 24 chr13 75624559 75624696 -26248473 - L1P LINE L1 -4153 1993 1856 2308 63 0 11 chr13 75624696 75625037 -26248132 + AluY SINE Alu 1 338 0 5806 144 9 24 chr13 75625037 75625958 -26247211 - L1P LINE L1 -4290 1856 949 216 200 9 76 chr13 75625960 75625983 -26247186 + (TA)n Simple_repeat Simple_repeat 2 25 -74 2264 106 0 10 chr13 75625983 75626295 -26246874 - AluSc SINE Alu 0 309 1 216 200 9 76 chr13 75626295 75626376 -26246793 + (TA)n Simple_repeat Simple_repeat 25 99 0 315 0 0 0 chr13 75626890 75626925 -26246244 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr13 75627292 75627324 -26245845 + AT_rich Low_complexity Low_complexity 1 32 0 287 317 0 0 chr13 75627362 75627444 -26245725 + L2 LINE L2 2239 2320 -994 227 214 0 0 chr13 75627444 75627486 -26245683 + L2 LINE L2 2724 2765 -549 1190 200 101 48 chr13 75627486 75627841 -26245328 + MLT1A2 LTR MaLR 1 374 0 983 295 19 31 chr13 75627912 75628231 -26244938 + MLT1H LTR MaLR 44 358 -191 21 36 0 0 chr13 75628235 75628263 -26244906 + AT_rich Low_complexity Low_complexity 1 28 0 1105 168 18 0 chr13 75628423 75628649 -26244520 + L1MA7 LINE L1 6055 6284 -7 239 332 66 19 chr13 75628867 75629126 -26244043 + L1ME LINE L1 5444 5714 -448 21 36 0 0 chr13 75629316 75629344 -26243825 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 75630133 75630161 -26243008 + AT_rich Low_complexity Low_complexity 1 28 0 878 217 17 0 chr13 75630166 75630341 -26242828 - MER2 DNA MER2_type -145 200 23 185 359 132 41 chr13 75630386 75630681 -26242488 + L2 LINE L2 1833 2154 -1160 1428 143 14 9 chr13 75631266 75631489 -26241680 - AluSg/x SINE Alu -15 297 74 247 369 78 14 chr13 75631568 75631709 -26241460 + L2 LINE L2 3162 3311 -2 34 65 0 0 chr13 75631866 75631928 -26241241 + AT_rich Low_complexity Low_complexity 1 62 0 577 302 86 12 chr13 75632282 75632527 -26240642 - MLT1G LTR MaLR -313 277 15 8360 208 41 74 chr13 75632764 75634369 -26238800 - L1MC1 LINE L1 -2 6611 4956 2349 87 0 0 chr13 75634369 75634680 -26238489 - AluY SINE Alu 0 311 1 8360 208 41 74 chr13 75634680 75637804 -26235365 - L1MC1 LINE L1 -1657 4956 1732 258 95 0 0 chr13 75637804 75637846 -26235323 + (CA)n Simple_repeat Simple_repeat 1 42 0 8360 208 41 74 chr13 75637846 75637952 -26235217 - L1MC1 LINE L1 -4881 1732 1624 1749 227 11 30 chr13 75637952 75638392 -26234777 - Tigger2a DNA MER2_type -1 433 2 8360 208 41 74 chr13 75638392 75638683 -26234486 - L1MC1 LINE L1 -4989 1624 1325 2095 91 0 7 chr13 75638683 75638958 -26234211 - AluSc SINE Alu -13 296 24 8360 208 41 74 chr13 75638958 75639069 -26234100 - L1MC1 LINE L1 -5288 1325 1212 213 39 0 0 chr13 75639069 75639095 -26234074 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8360 208 41 74 chr13 75639095 75639426 -26233743 - L1MC1 LINE L1 -5401 1212 872 1579 209 31 8 chr13 75639426 75639784 -26233385 - MER47A DNA MER2_type 0 366 1 8360 208 41 74 chr13 75639784 75641032 -26232137 - L1MC1 LINE L1 -5741 872 28 32 43 0 0 chr13 75641521 75641567 -26231602 + AT_rich Low_complexity Low_complexity 1 46 0 602 223 45 19 chr13 75642091 75642248 -26230921 + MER106A DNA MER1_type 72 232 -4 1331 210 61 9 chr13 75643041 75643370 -26229799 - L1MB7 LINE L1 -48 6136 5791 587 281 73 64 chr13 75643533 75643860 -26229309 + L1M4 LINE L1 25 354 -6188 * 5010 245 106 25 chr13 75643856 75645488 -26227681 + L1MC3 LINE L1 6006 7770 -15 201 257 9 38 chr13 75645507 75645612 -26227557 + A-rich Low_complexity Low_complexity 3 104 0 33 25 0 0 chr13 75646663 75646703 -26226466 + AT_rich Low_complexity Low_complexity 1 40 0 767 203 52 51 chr13 75647095 75647483 -26225686 + MER52A LTR ERV1 1 1755 0 210 118 0 0 chr13 75649631 75649665 -26223504 + (CATA)n Simple_repeat Simple_repeat 2 35 0 793 299 39 92 chr13 75651728 75651875 -26221294 + MLT1E2 LTR MaLR 70 223 -403 1117 101 32 16 chr13 75651875 75652064 -26221105 + L1MA5A LINE L1 6100 6291 -6 793 299 39 92 chr13 75652064 75652502 -26220667 + MLT1E2 LTR MaLR 223 626 0 1244 132 10 5 chr13 75652540 75652744 -26220425 - MER65A LTR ERV1 0 445 241 764 153 97 33 chr13 75652753 75652939 -26220230 - THE1C LTR MaLR -189 186 1 637 156 17 112 chr13 75652939 75653118 -26220051 - MER65B LTR ERV1 -367 164 3 255 359 39 0 chr13 75653437 75653540 -26219629 - L2 LINE L2 -23 3249 3143 307 250 91 30 chr13 75653690 75653822 -26219347 - L2 LINE L2 -579 2735 2596 1671 248 102 7 chr13 75654086 75654545 -26218624 + MLT1D LTR MaLR 1 503 -2 504 104 0 13 chr13 75655082 75655159 -26218010 + MADE1 DNA Mariner 1 76 -4 21 0 0 0 chr13 75655465 75655486 -26217683 + AT_rich Low_complexity Low_complexity 1 21 0 433 330 54 11 chr13 75656122 75656399 -26216770 + L1ME LINE L1 5266 5554 -608 369 171 0 14 chr13 75656515 75656585 -26216584 + HsTC2 DNA Tc2 1830 1898 0 510 290 74 19 chr13 75657909 75658071 -26215098 - MER45A DNA AcHobo 0 178 8 249 57 0 0 chr13 75658217 75658252 -26214917 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 246 196 20 0 chr13 75658592 75658643 -26214526 + L2 LINE L2 3262 3313 0 504 88 0 0 chr13 75659017 75659085 -26214084 - L1PA3 LINE L1 -3 6152 6082 198 0 0 0 chr13 75659085 75659107 -26214062 + (GA)n Simple_repeat Simple_repeat 1 22 0 504 88 0 0 chr13 75659107 75659118 -26214051 - L1PA3 LINE L1 -72 6083 6073 229 234 16 0 chr13 75659846 75659910 -26213259 + (TA)n Simple_repeat Simple_repeat 2 66 0 198 71 0 0 chr13 75660833 75660861 -26212308 + (TG)n Simple_repeat Simple_repeat 2 29 0 418 228 108 19 chr13 75661618 75661776 -26211393 + L1MC4a LINE L1 6210 6381 -1427 766 212 45 30 chr13 75662236 75662466 -26210703 + MER61D LTR ERV1 338 1239 -13 1461 279 140 14 chr13 75662495 75663414 -26209755 + L1MC4 LINE L1 6500 7635 -407 301 366 16 33 chr13 75663803 75663986 -26209183 + HAL1 LINE L1 436 615 -1892 1102 308 70 51 chr13 75664116 75665554 -26207615 - L1MEc LINE L1 -2904 3311 1807 828 253 68 52 chr13 75665579 75666141 -26207028 - L1MEc LINE L1 -4676 1720 1150 1102 118 0 35 chr13 75666169 75666339 -26206830 - AluSc SINE Alu -21 288 125 2098 285 89 15 chr13 75666339 75667222 -26205947 - L1MEc LINE L1 -5333 1063 115 209 231 0 15 chr13 75667223 75667288 -26205881 + (TA)n Simple_repeat Simple_repeat 2 65 0 302 258 6 18 chr13 75667300 75667463 -26205706 + (TA)n Simple_repeat Simple_repeat 1 161 0 416 269 15 76 chr13 75667927 75668124 -26205045 + L2 LINE L2 3126 3310 -3 290 337 0 31 chr13 75668554 75668717 -26204452 + CT-rich Low_complexity Low_complexity 3 160 0 287 333 15 53 chr13 75668728 75668860 -26204309 - L2 LINE L2 -1 3312 3186 3301 226 42 30 chr13 75668928 75669994 -26203175 + L1PB4 LINE L1 2954 4032 -2114 1221 213 70 29 chr13 75669995 75670235 -26202934 + L1MA9 LINE L1 5966 6223 -89 1662 170 59 12 chr13 75670235 75670558 -26202611 - MER44D DNA MER2_type 0 609 2 1221 213 70 29 chr13 75670558 75670631 -26202538 + L1MA9 LINE L1 6223 6292 -20 4353 161 14 49 chr13 75670662 75671724 -26201445 + L1PB4 LINE L1 5127 6153 -3 207 114 0 0 chr13 75671855 75671890 -26201279 + (TG)n Simple_repeat Simple_repeat 2 36 0 196 389 37 0 chr13 75672320 75672428 -26200741 + L2 LINE L2 2551 2662 -652 309 344 38 0 chr13 75672558 75672715 -26200454 + MIR SINE MIR 97 259 -3 337 220 44 11 chr13 75673308 75673399 -26199770 - MER34 LTR ERV1 -27 515 422 950 240 121 32 chr13 75673409 75673722 -26199447 + MER2 DNA MER2_type 5 345 0 248 326 22 0 chr13 75673724 75673813 -26199356 - MER34 LTR ERV1 -127 415 325 2347 80 0 10 chr13 75673844 75674157 -26199012 + AluY SINE Alu 1 310 -1 240 117 17 50 chr13 75674168 75674228 -26198941 + (CTTAT)n Simple_repeat Simple_repeat 4 61 0 1176 184 37 12 chr13 75674228 75674472 -26198697 - MER34 LTR ERV1 -290 252 3 244 348 0 8 chr13 75674649 75674767 -26198402 - HAL1 LINE L1 -862 1645 1529 1178 0 0 0 chr13 75675313 75675445 -26197724 + AluY SINE Alu 174 305 -6 315 320 133 7 chr13 75675893 75676043 -26197126 + L2 LINE L2 2561 2729 -585 310 365 30 30 chr13 75676329 75676630 -26196539 + L2 LINE L2 2825 3125 -188 880 255 15 19 chr13 75676855 75677114 -26196055 + Charlie4 DNA MER1_type 22 279 -1682 425 367 118 9 chr13 75677618 75677847 -26195322 - MIR SINE MIR 0 262 9 180 344 32 32 chr13 75678655 75678748 -26194421 + MER5A DNA MER1_type 28 120 -69 29 0 0 0 chr13 75678767 75678796 -26194373 + AT_rich Low_complexity Low_complexity 1 29 0 2661 148 49 27 chr13 75679534 75680061 -26193108 - L1MA4A LINE L1 0 6303 5765 345 47 0 0 chr13 75680177 75680220 -26192949 + (TG)n Simple_repeat Simple_repeat 2 44 0 1588 118 12 8 chr13 75680221 75680467 -26192702 - AluSc SINE Alu -24 285 39 25 65 0 0 chr13 75680964 75681010 -26192159 + AT_rich Low_complexity Low_complexity 1 46 0 262 244 23 12 chr13 75681178 75681264 -26191905 - MLT1H LTR MaLR 0 549 463 347 242 70 31 chr13 75681497 75681625 -26191544 - MLT1H LTR MaLR -416 133 1 1588 111 62 0 chr13 75683213 75683456 -26189713 - AluY SINE Alu -16 295 38 25 31 0 0 chr13 75683662 75683694 -26189475 + AT_rich Low_complexity Low_complexity 1 32 0 1594 194 45 21 chr13 75684749 75685085 -26188084 - MER2 DNA MER2_type 0 344 1 21 71 0 0 chr13 75685226 75685268 -26187901 + AT_rich Low_complexity Low_complexity 1 42 0 450 356 23 11 chr13 75685570 75685744 -26187425 - MER5B DNA MER1_type 0 178 3 1886 146 52 19 chr13 75685844 75686207 -26186962 + THE1C LTR MaLR 1 375 0 515 158 0 0 chr13 75686337 75686413 -26186756 + AluJ/FLAM SINE Alu 3 78 -234 373 261 141 50 chr13 75686423 75686664 -26186505 + L2 LINE L2 3042 3304 -9 202 146 24 0 chr13 75686732 75686773 -26186396 + (TA)n Simple_repeat Simple_repeat 2 43 0 596 189 0 0 chr13 75686945 75687056 -26186113 + AluJb SINE Alu 1 111 -201 21 36 0 0 chr13 75687695 75687723 -26185446 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr13 75687739 75687781 -26185388 + AT_rich Low_complexity Low_complexity 1 42 0 2061 119 33 0 chr13 75688144 75688446 -26184723 - AluSq SINE Alu -1 312 1 848 217 0 0 chr13 75689085 75689246 -26183923 + AluJb SINE Alu 137 297 -15 1128 231 107 39 chr13 75690274 75690800 -26182369 - MER67C LTR ERV1 0 514 1 294 335 6 81 chr13 75691146 75691319 -26181850 - ERVL LTR ERVL -4344 1420 1261 1066 201 109 3 chr13 75691333 75691616 -26181553 - MER33 DNA MER1_type -11 313 1 245 325 95 62 chr13 75692892 75693135 -26180034 - MIR SINE MIR -11 251 1 279 0 0 0 chr13 75693515 75693546 -26179623 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 289 82 0 20 chr13 75693548 75693597 -26179572 - Alu SINE Alu -15 285 238 976 76 0 0 chr13 75693606 75693724 -26179445 - AluY SINE Alu -193 118 1 1685 15 0 15 chr13 75693764 75693969 -26179200 - L1PA4 LINE L1 -8 6147 5946 941 274 86 22 chr13 75693974 75694433 -26178736 - L1ME3A LINE L1 -14 6156 5658 356 183 24 0 chr13 75694749 75694831 -26178338 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 238 293 103 0 chr13 75694833 75694949 -26178220 - L1ME3A LINE L1 -874 5272 5145 2150 173 51 7 chr13 75695833 75696243 -26176926 + MSTC LTR MaLR 1 428 0 2199 103 17 0 chr13 75696616 75696916 -26176253 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr13 75697400 75697423 -26175746 + AT_rich Low_complexity Low_complexity 1 23 0 1582 262 64 5 chr13 75697656 75698095 -26175074 + MLT1E2 LTR MaLR 155 619 -7 588 243 61 15 chr13 75698098 75698338 -26174831 + MLT1E2-int LTR MaLR 1 371 -1000 431 116 48 89 chr13 75698348 75698494 -26174675 - MER30 DNA MER1_type -62 168 29 597 223 27 20 chr13 75698868 75699016 -26174153 + MLT1E2-int LTR MaLR 447 595 -776 1853 128 60 41 chr13 75699368 75699734 -26173435 + THE1C LTR MaLR 3 375 0 25 0 0 0 chr13 75700024 75700049 -26173120 + AT_rich Low_complexity Low_complexity 1 25 0 570 236 85 99 chr13 75700311 75700713 -26172456 + MSTD LTR MaLR 1 396 0 440 48 0 0 chr13 75700722 75700785 -26172384 + AluY SINE Alu 247 309 -1 183 354 15 0 chr13 75700893 75700958 -26172211 - L2 LINE L2 -541 2773 2708 718 308 52 80 chr13 75700959 75701420 -26171749 + MLT1F1 LTR MaLR 104 551 -16 29 0 0 0 chr13 75701685 75701714 -26171455 + AT_rich Low_complexity Low_complexity 1 29 0 897 208 109 14 chr13 75702046 75702330 -26170839 - MER33 DNA MER1_type -13 311 1 231 88 0 0 chr13 75703057 75703091 -26170078 + (TG)n Simple_repeat Simple_repeat 2 35 0 313 291 80 33 chr13 75703586 75703799 -26169370 - L1MC4a LINE L1 -157 5964 5740 284 83 21 0 chr13 75704248 75704296 -26168873 + (CA)n Simple_repeat Simple_repeat 2 50 0 2182 99 0 0 chr13 75704399 75704711 -26168458 + AluSc SINE Alu 1 312 0 22 0 0 0 chr13 75705246 75705268 -26167901 + AT_rich Low_complexity Low_complexity 1 22 0 3594 219 21 47 chr13 75706091 75707362 -26165807 + L1MC2 LINE L1 4987 6223 -121 253 119 0 48 chr13 75707362 75707404 -26165765 + Alu SINE Alu 1 40 -263 27 0 0 0 chr13 75707994 75708021 -26165148 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr13 75708724 75708748 -26164421 + AT_rich Low_complexity Low_complexity 1 24 0 1555 100 0 48 chr13 75709442 75709671 -26163498 - AluSg/x SINE Alu -24 286 69 1572 96 13 4 chr13 75709671 75709910 -26163259 + L1P LINE L1 5046 5286 -860 1795 77 2 55 chr13 75710012 75710370 -26162799 + L1P3 LINE L1 5172 5516 -638 774 255 61 54 chr13 75710385 75710713 -26162456 - LTR9B LTR ERV1 -264 380 1 764 161 40 20 chr13 75710713 75710858 -26162311 + MSTB1 LTR MaLR 285 432 0 23 78 0 0 chr13 75711403 75711454 -26161715 + AT_rich Low_complexity Low_complexity 1 51 0 615 362 128 18 chr13 75711650 75712956 -26160213 + L2 LINE L2 1730 3190 -123 186 43 0 0 chr13 75713227 75713250 -26159919 + (GA)n Simple_repeat Simple_repeat 1 23 0 628 221 23 0 chr13 75713934 75714065 -26159104 - AluJb SINE Alu -16 296 163 699 252 78 72 chr13 75714121 75714466 -26158703 + L1ME2 LINE L1 5783 6129 -35 408 275 45 60 chr13 75714627 75714896 -26158273 + L1MB8 LINE L1 5587 5851 -327 23 33 0 0 chr13 75717351 75717381 -26155788 + AT_rich Low_complexity Low_complexity 1 30 0 947 133 53 0 chr13 75718778 75718929 -26154240 + FRAM SINE Alu 1 156 -20 2707 172 14 14 chr13 75721190 75721672 -26151497 + LTR45B LTR ERV1 8 489 0 208 111 56 0 chr13 75722209 75722245 -26150924 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 261 241 89 36 chr13 75722663 75722775 -26150394 + L1MC4a LINE L1 6880 6997 -811 2001 118 7 0 chr13 75722779 75723059 -26150110 - AluSc SINE Alu -16 293 12 1000 272 52 62 chr13 75723071 75723200 -26149969 + L1MC4a LINE L1 7137 7266 -542 2077 120 3 7 chr13 75723200 75723492 -26149677 + AluSc SINE Alu 1 291 -18 294 29 0 0 chr13 75723497 75723532 -26149637 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1000 272 52 62 chr13 75723532 75723910 -26149259 + L1MC4a LINE L1 7270 7645 -163 1164 160 15 10 chr13 75723911 75724117 -26149052 + MER2 DNA MER2_type 2 208 -137 206 200 15 31 chr13 75724135 75724200 -26148969 + (TATTG)n Simple_repeat Simple_repeat 2 65 0 234 217 12 24 chr13 75724250 75724333 -26148836 + L1MC4a LINE L1 7640 7721 -87 22 70 0 0 chr13 75724379 75724422 -26148747 + AT_rich Low_complexity Low_complexity 1 43 0 732 230 5 39 chr13 75724479 75724683 -26148486 - MER3 DNA MER1_type -12 197 1 263 158 0 18 chr13 75725974 75726031 -26147138 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 25 0 0 0 chr13 75726257 75726282 -26146887 + AT_rich Low_complexity Low_complexity 1 25 0 316 221 0 96 chr13 75727261 75727365 -26145804 - MIR SINE MIR -57 205 112 1067 187 5 5 chr13 75728005 75728192 -26144977 - AluSx SINE Alu -125 187 1 1648 145 7 21 chr13 75728538 75728820 -26144349 + AluY SINE Alu 1 278 -33 180 0 0 0 chr13 75728820 75728840 -26144329 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1581 89 0 9 chr13 75729459 75729673 -26143496 - AluSq SINE Alu -11 302 91 295 77 0 0 chr13 75729673 75729712 -26143457 + Alu SINE Alu 19 57 -246 723 190 8 0 chr13 75729720 75729841 -26143328 - AluJo SINE Alu -25 287 166 1182 133 10 46 chr13 75729841 75730036 -26143133 - THE1B LTR MaLR 0 364 177 9652 108 22 94 chr13 75730186 75730725 -26142444 - THE1B-int LTR MaLR 0 1580 1004 1107 103 0 0 chr13 75730725 75730871 -26142298 - AluYa5 SINE Alu -16 295 150 9652 108 22 94 chr13 75730871 75731889 -26141280 - THE1B-int LTR MaLR -576 1004 1 2317 116 30 25 chr13 75731889 75732251 -26140918 - THE1B LTR MaLR 0 364 1 782 208 24 24 chr13 75732251 75732419 -26140750 - AluJo SINE Alu -142 170 3 241 168 61 0 chr13 75732544 75732675 -26140494 + (TA)n Simple_repeat Simple_repeat 2 140 0 23 0 0 0 chr13 75733651 75733674 -26139495 + AT_rich Low_complexity Low_complexity 1 23 0 1639 219 64 16 chr13 75734691 75735130 -26138039 - MLT1C LTR MaLR 0 467 8 207 0 0 0 chr13 75735498 75735521 -26137648 + (A)n Simple_repeat Simple_repeat 1 23 0 1679 178 14 3 chr13 75736860 75737146 -26136023 + MSTB LTR MaLR 1 289 -137 555 282 49 15 chr13 75738499 75738809 -26134360 - MER110 LTR ERV1 -17 474 80 2496 60 0 19 chr13 75739085 75739402 -26133767 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 75739588 75739616 -26133553 + AT_rich Low_complexity Low_complexity 1 28 0 207 114 0 0 chr13 75739687 75739722 -26133447 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 757 290 133 23 chr13 75739783 75740871 -26132298 - L1ME LINE L1 -452 5718 4488 35 41 0 0 chr13 75740938 75740987 -26132182 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 75741018 75741040 -26132129 + AT_rich Low_complexity Low_complexity 1 22 0 357 340 136 19 chr13 75741205 75741411 -26131758 - MIR SINE MIR -30 232 3 297 51 0 0 chr13 75741785 75741824 -26131345 + (TG)n Simple_repeat Simple_repeat 2 40 0 201 167 0 0 chr13 75742101 75742137 -26131032 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 4327 112 11 2 chr13 75742142 75742779 -26130390 - L1PA10 LINE L1 0 6168 5526 186 265 188 17 chr13 75742856 75742973 -26130196 + MIR SINE MIR 104 240 -22 428 350 113 33 chr13 75743229 75743620 -26129549 + L2 LINE L2 2867 3288 -25 184 336 26 17 chr13 75744474 75744590 -26128579 - L3b LINE CR1 -199 1384 1268 324 227 0 0 chr13 75744667 75744733 -26128436 - L1MC4 LINE L1 -1336 6706 6641 226 301 155 19 chr13 75745851 75745954 -26127215 + MLT1E LTR MaLR 95 211 -382 37 23 0 0 chr13 75746136 75746180 -26126989 + AT_rich Low_complexity Low_complexity 1 44 0 181 171 0 0 chr13 75747870 75747905 -26125264 + MIR SINE MIR 137 171 -91 296 290 65 8 chr13 75747914 75748038 -26125131 + L1ME3A LINE L1 32 162 -6234 665 269 128 25 chr13 75748046 75748399 -26124770 + L1ME3A LINE L1 1730 2118 -4278 383 289 102 25 chr13 75748405 75748602 -26124567 + L1ME3A LINE L1 2173 2384 -4012 1440 222 47 8 chr13 75748609 75748969 -26124200 + L1MA6 LINE L1 4911 5284 -862 597 188 0 29 chr13 75749009 75749147 -26124022 - L1PA16 LINE L1 -1437 4709 4576 * 5085 157 34 30 chr13 75749146 75750577 -26122592 + L1PA16 LINE L1 4725 6165 -1 3924 220 31 12 chr13 75750579 75751562 -26121607 + L1MA6 LINE L1 5299 6300 0 1896 270 87 22 chr13 75751550 75752662 -26120507 + L1ME3A LINE L1 2338 3521 -2694 * 2267 228 20 9 chr13 75752659 75753296 -26119873 + L1ME3A LINE L1 5244 5887 -360 231 267 35 23 chr13 75753523 75753609 -26119560 - MLT1H1-int LTR MaLR -1013 358 272 395 259 80 19 chr13 75753769 75753931 -26119238 - MLT1H1 LTR MaLR -8 547 376 1150 259 93 44 chr13 75753931 75754360 -26118809 - MLT1C LTR MaLR 0 467 18 326 176 24 35 chr13 75754362 75754447 -26118722 + L1MEc LINE L1 1978 2061 -4335 1501 269 89 24 chr13 75754450 75755033 -26118136 - MLT1E2 LTR MaLR -1 625 5 1681 277 52 21 chr13 75755107 75756139 -26117030 + L1MEc LINE L1 2538 3746 -2469 1481 202 14 14 chr13 75756189 75756321 -26116848 + AluJo SINE Alu 1 132 -180 1978 123 6 22 chr13 75756321 75756639 -26116530 + AluSq SINE Alu 1 313 0 1481 202 14 14 chr13 75756639 75756803 -26116366 + AluJo SINE Alu 131 297 -15 298 249 166 16 chr13 75757350 75757543 -26115626 + L1M4 LINE L1 2131 2352 -3794 290 355 59 7 chr13 75757581 75757733 -26115436 + L1ME3A LINE L1 5995 6154 -85 685 316 86 6 chr13 75758022 75758197 -26114972 + ERVL LTR ERVL 4714 4874 -890 1190 190 47 52 chr13 75758197 75758560 -26114609 - MLT1A1 LTR MaLR 0 365 5 685 316 86 6 chr13 75758560 75758710 -26114459 + ERVL LTR ERVL 4874 5065 -699 26 30 0 0 chr13 75760738 75760771 -26112398 + AT_rich Low_complexity Low_complexity 1 33 0 2117 159 64 17 chr13 75761456 75761864 -26111305 + MSTA LTR MaLR 1 427 -1 263 191 0 64 chr13 75763115 75763225 -26109944 + (TATAA)n Simple_repeat Simple_repeat 3 105 0 181 183 65 11 chr13 75763277 75763370 -26109799 + GA-rich Low_complexity Low_complexity 3 100 0 415 304 201 10 chr13 75763616 75763820 -26109349 + L2 LINE L2 2131 2373 -941 560 310 38 0 chr13 75765073 75765231 -26107938 - MER5A DNA MER1_type -6 183 20 456 312 149 18 chr13 75765630 75765851 -26107318 - MIR SINE MIR -10 252 3 913 244 13 49 chr13 75766729 75767037 -26106132 - AluJb SINE Alu -4 298 2 2365 84 7 0 chr13 75767251 75767561 -26105608 - AluSq SINE Alu -1 312 1 32 0 0 0 chr13 75767745 75767777 -26105392 + AT_rich Low_complexity Low_complexity 1 32 0 2275 78 0 0 chr13 75770004 75770331 -26102838 + AluY SINE Alu 1 327 0 32 0 0 0 chr13 75771093 75771125 -26102044 + AT_rich Low_complexity Low_complexity 1 32 0 579 122 13 0 chr13 75771584 75771737 -26101432 + L1MA7 LINE L1 5958 6218 -73 248 89 0 0 chr13 75771768 75771813 -26101356 + LTR66 LTR ERVL 394 438 -172 227 170 0 0 chr13 75771815 75771862 -26101307 + L1MA7 LINE L1 6234 6280 -11 31 26 0 0 chr13 75771890 75771928 -26101241 + AT_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr13 75772019 75772043 -26101126 + (CA)n Simple_repeat Simple_repeat 2 25 0 1761 196 49 35 chr13 75772985 75773524 -26099645 + MLT2A2 LTR ERVL 1 554 0 30 45 0 0 chr13 75774138 75774182 -26098987 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr13 75774422 75774445 -26098724 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr13 75774566 75774603 -26098566 + AT_rich Low_complexity Low_complexity 1 37 0 507 326 61 13 chr13 75775665 75775895 -26097274 + LTR40b LTR ERVL 220 460 -2 873 250 32 29 chr13 75776114 75776394 -26096775 + L1MB7 LINE L1 5788 6068 -116 * 4393 68 0 3 chr13 75776393 75776963 -26096206 - L1PA8 LINE L1 -213 5959 5392 2924 112 32 2 chr13 75776936 75777408 -26095761 + L1PA8 LINE L1 4896 5381 -765 * 1042 293 32 8 chr13 75777438 75777936 -26095233 + L1MC/D LINE L1 4783 5292 -854 477 183 0 92 chr13 75777947 75778078 -26095091 - L1MA9 LINE L1 -3 6309 6191 304 188 0 0 chr13 75778074 75778138 -26095031 - L1MA7 LINE L1 -21 6270 6207 * 355 270 57 35 chr13 75778142 75778372 -26094797 + L1M4c LINE L1 1962 2196 -4188 782 245 53 5 chr13 75778411 75778670 -26094499 - L1M1 LINE L1 -4257 3309 3064 216 0 0 0 chr13 75778670 75778694 -26094475 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 782 245 53 5 chr13 75778694 75778771 -26094398 - L1M1 LINE L1 -4502 3064 2775 367 214 24 0 chr13 75778776 75778860 -26094309 + L1MC/D LINE L1 5539 5624 -709 611 285 79 67 chr13 75779333 75779827 -26093342 - L1MEd LINE L1 -5033 1086 587 1709 226 31 0 chr13 75784626 75784975 -26088194 + MLT1A1 LTR MaLR 1 360 -5 2415 46 26 3 chr13 75786403 75786706 -26086463 + AluY SINE Alu 1 310 -1 6225 206 107 45 chr13 75787047 75788698 -26084471 + MER52A LTR ERV1 3 1755 0 789 290 114 43 chr13 75838868 75839059 -26034110 - L1MEc LINE L1 -4091 2305 2129 1847 127 3 14 chr13 75839059 75839350 -26033819 - AluSc SINE Alu -21 288 1 789 290 114 43 chr13 75839350 75840168 -26033001 - L1MEc LINE L1 -4267 2129 1224 4079 261 75 34 chr13 75840189 75842296 -26030873 - L1M4 LINE L1 -486 5692 3505 2130 127 7 0 chr13 75842558 75842865 -26030304 - AluSp SINE Alu -4 309 1 264 254 0 0 chr13 75843034 75843093 -26030076 + (TA)n Simple_repeat Simple_repeat 2 60 0 29 28 0 0 chr13 75843109 75843145 -26030024 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 75844213 75844249 -26028920 + AT_rich Low_complexity Low_complexity 1 36 0 290 360 0 0 chr13 75844338 75844424 -26028745 + MER69 DNA AcHobo 20 105 -2421 1070 225 45 73 chr13 75844447 75844803 -26028366 + MLT1A2 LTR MaLR 24 369 -5 1633 306 52 24 chr13 75844811 75845518 -26027651 + MER69 DNA AcHobo 107 833 -393 1868 245 55 35 chr13 75845539 75846224 -26026945 + MER69 DNA AcHobo 1828 2526 0 25 51 0 0 chr13 75846568 75846607 -26026562 + AT_rich Low_complexity Low_complexity 1 39 0 841 147 31 18 chr13 75846729 75846892 -26026277 - L1MA10 LINE L1 -7 6327 6163 4086 199 20 19 chr13 75846912 75848231 -26024938 - L1MB1 LINE L1 -3 6186 4776 411 38 0 0 chr13 75848231 75848284 -26024885 + (TG)n Simple_repeat Simple_repeat 2 54 0 4086 199 20 19 chr13 75848284 75848376 -26024793 - L1MB1 LINE L1 -1413 4776 4686 32 0 0 0 chr13 75849748 75849780 -26023389 + AT_rich Low_complexity Low_complexity 1 32 0 791 237 0 23 chr13 75850267 75850440 -26022729 - FRAM SINE Alu -6 170 2 246 105 0 0 chr13 75850444 75850482 -26022687 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 831 191 7 0 chr13 75850482 75850618 -26022551 - FRAM SINE Alu -29 147 11 759 242 4 75 chr13 75850628 75850855 -26022314 - AluSx SINE Alu -101 211 1 332 65 43 32 chr13 75851241 75851334 -26021835 + (TA)n Simple_repeat Simple_repeat 1 94 0 407 76 59 25 chr13 75851509 75851628 -26021541 + (TA)n Simple_repeat Simple_repeat 1 123 0 288 339 11 37 chr13 75851864 75852053 -26021116 - MIR SINE MIR 0 262 79 182 286 0 78 chr13 75855351 75855428 -26017741 + MIR SINE MIR 24 94 -168 1195 334 24 7 chr13 75856976 75857398 -26015771 + LTR16C LTR ERVL 50 478 -13 1137 194 40 32 chr13 75857795 75858043 -26015126 - AluJo SINE Alu -58 254 5 221 176 0 20 chr13 75858515 75858566 -26014603 + CT-rich Low_complexity Low_complexity 4 53 0 218 103 0 26 chr13 75859000 75859039 -26014130 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 810 140 122 6 chr13 75859041 75859205 -26013964 - AluJo SINE Alu -7 305 123 1715 142 74 15 chr13 75859863 75860187 -26012982 + MER61A LTR ERV1 1 343 0 632 304 88 23 chr13 75860194 75860500 -26012669 - LTR16C LTR ERVL -4 487 162 249 335 95 19 chr13 75860746 75860904 -26012265 + L2 LINE L2 2449 2618 -696 194 296 112 60 chr13 75861226 75861459 -26011710 + L2 LINE L2 2809 3053 -219 968 332 132 37 chr13 75861707 75862222 -26010947 + L2 LINE L2 1021 1627 -1687 3219 182 47 14 chr13 75862222 75862910 -26010259 - MER67C LTR ERV1 0 710 1 968 332 132 37 chr13 75862910 75863123 -26010046 + L2 LINE L2 1627 1818 -1496 328 164 30 0 chr13 75863126 75863193 -26009976 + LTR24B LTR ERV1 9 77 -499 1622 166 46 0 chr13 75863273 75863556 -26009613 + AluJb SINE Alu 11 306 -6 2161 184 87 55 chr13 75863558 75864124 -26009045 + LTR34 LTR ERV1 107 690 -9 1451 294 91 29 chr13 75864144 75864736 -26008433 + L2 LINE L2 1833 2461 -853 573 333 55 21 chr13 75864734 75864971 -26008198 + L2 LINE L2 3069 3313 0 * 2326 149 16 0 chr13 75865075 75865444 -26007725 + THE1C LTR MaLR 1 375 0 27 29 0 0 chr13 75866230 75866264 -26006905 + AT_rich Low_complexity Low_complexity 1 34 0 32 0 0 0 chr13 75867574 75867606 -26005563 + AT_rich Low_complexity Low_complexity 1 32 0 1929 146 138 21 chr13 75867683 75868066 -26005103 - MSTA LTR MaLR 0 428 1 248 188 16 0 chr13 75869433 75869497 -26003672 + (TA)n Simple_repeat Simple_repeat 1 65 0 24 0 0 0 chr13 75869974 75869998 -26003171 + AT_rich Low_complexity Low_complexity 1 24 0 668 176 14 0 chr13 75870002 75870144 -26003025 - L1MA4A LINE L1 -1 6302 6159 3994 99 2 0 chr13 75870276 75870829 -26002340 - MER41A LTR ERV1 0 554 1 2111 121 0 16 chr13 75871161 75871475 -26001694 + AluSc SINE Alu 1 309 0 1422 201 93 44 chr13 75871633 75871661 -26001508 + MLT1A1 LTR MaLR 1 26 -339 201 39 0 0 chr13 75871661 75871687 -26001482 + (CCCCAA)n Simple_repeat Simple_repeat 5 30 0 1422 201 93 44 chr13 75871687 75871813 -26001356 + MLT1A1 LTR MaLR 26 144 -221 4367 168 62 25 chr13 75871813 75872684 -26000485 + MER4D LTR ERV1 1 903 0 1422 201 93 44 chr13 75872684 75872872 -26000297 + MLT1A1 LTR MaLR 144 361 -4 309 368 99 6 chr13 75874329 75874511 -25998658 + HAL1b LINE L1 401 599 -749 21 36 0 0 chr13 75875045 75875073 -25998096 + AT_rich Low_complexity Low_complexity 1 28 0 1899 241 42 20 chr13 75875886 75876380 -25996789 - MLT1D LTR MaLR 0 505 1 346 326 108 56 chr13 75876391 75876844 -25996325 + L2 LINE L2 1466 1974 -1340 2493 59 0 3 chr13 75876844 75877148 -25996021 + AluY SINE Alu 1 303 -8 346 326 108 56 chr13 75877148 75877431 -25995738 + L2 LINE L2 1974 2241 -1073 422 310 133 58 chr13 75877515 75877919 -25995250 + L2 LINE L2 2554 2926 -387 957 265 21 53 chr13 75877919 75878244 -25994925 + MLT1A1 LTR MaLR 1 335 -30 1948 98 0 0 chr13 75878244 75878489 -25994680 + AluSq SINE Alu 38 282 -31 277 60 0 40 chr13 75878492 75878542 -25994627 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 957 265 21 53 chr13 75878542 75878589 -25994580 + MLT1A1 LTR MaLR 337 365 0 422 310 133 58 chr13 75878589 75878625 -25994544 + L2 LINE L2 2926 3009 -304 332 355 6 18 chr13 75878788 75878957 -25994212 + MIR SINE MIR 54 220 -42 637 267 34 34 chr13 75880699 75880905 -25992264 + MLT1D LTR MaLR 3 208 -297 1009 217 91 4 chr13 75881028 75881258 -25991911 + MLT1D LTR MaLR 255 504 -1 782 175 39 19 chr13 75881370 75881524 -25991645 + MLT1A1 LTR MaLR 1 157 -208 1084 214 12 93 chr13 75881526 75881849 -25991320 + AluJo SINE Alu 2 298 -4 237 281 12 0 chr13 75883116 75883198 -25989971 + MLT1L LTR MaLR 511 593 -22 201 175 0 0 chr13 75883329 75883369 -25989800 + (TA)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr13 75883655 75883679 -25989490 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 75883860 75883881 -25989288 + AT_rich Low_complexity Low_complexity 1 21 0 2227 123 3 0 chr13 75883927 75884229 -25988940 - AluSx SINE Alu -9 303 1 279 0 0 0 chr13 75884602 75884633 -25988536 + (T)n Simple_repeat Simple_repeat 1 31 0 322 294 137 7 chr13 75885131 75885277 -25987892 - MIR SINE MIR 0 262 98 504 260 64 35 chr13 75886862 75887035 -25986134 - L2 LINE L2 0 3313 3136 1624 86 5 0 chr13 75887038 75887247 -25985922 + AluSc SINE Alu 1 210 -99 418 323 91 42 chr13 75887675 75887982 -25985187 + L2 LINE L2 2175 2496 -818 388 202 11 38 chr13 75888092 75888275 -25984894 + (TA)n Simple_repeat Simple_repeat 2 179 0 195 42 0 0 chr13 75888511 75888535 -25984634 + (CA)n Simple_repeat Simple_repeat 1 24 0 408 182 82 100 chr13 75888556 75888666 -25984503 - L1MA9 LINE L1 -29 6270 6155 796 186 8 173 chr13 75888717 75888990 -25984179 - L1MA9 LINE L1 -159 6153 5959 2184 212 13 4 chr13 75888990 75889447 -25983722 + MER65C LTR ERV1 1 461 0 796 186 8 173 chr13 75889447 75889554 -25983615 - L1MA9 LINE L1 -353 5959 5836 496 156 0 0 chr13 75889876 75889972 -25983197 + L1MA4A LINE L1 6206 6301 -2 200 343 0 14 chr13 75890187 75890257 -25982912 + L2 LINE L2 3172 3240 -32 380 172 0 0 chr13 75890257 75890321 -25982848 - LOR1a LTR ERV1 0 497 434 1126 122 10 36 chr13 75890321 75890517 -25982652 + AluSc SINE Alu 1 191 -118 476 191 35 9 chr13 75890617 75890732 -25982437 + AluSc SINE Alu 183 300 -9 1660 181 111 11 chr13 75890732 75891102 -25982067 - LOR1b LTR ERV1 -54 407 1 23 0 0 0 chr13 75892031 75892054 -25981115 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 75892795 75892825 -25980344 + AT_rich Low_complexity Low_complexity 1 30 0 4183 142 26 71 chr13 75893011 75894454 -25978715 - pTR5 LTR ERV1 0 2606 1524 244 344 0 11 chr13 75894612 75894705 -25978464 + L2 LINE L2 2722 2813 -501 542 214 0 0 chr13 75894705 75894817 -25978352 + MLT2C1 LTR ERVL 1 112 -285 209 216 0 0 chr13 75894831 75894868 -25978301 + (CATA)n Simple_repeat Simple_repeat 3 39 0 326 104 21 0 chr13 75894908 75894956 -25978213 + MLT2C1 LTR ERVL 349 397 0 28 29 0 0 chr13 75896509 75896544 -25976625 + AT_rich Low_complexity Low_complexity 1 35 0 214 205 0 0 chr13 75896577 75896616 -25976553 + (TA)n Simple_repeat Simple_repeat 2 40 0 2265 58 0 14 chr13 75897091 75897384 -25975785 - AluY SINE Alu -22 289 1 2176 81 0 3 chr13 75898536 75898819 -25974350 + AluY SINE Alu 24 305 -6 516 309 134 32 chr13 75898852 75899195 -25973974 - LTR16A1 LTR ERVL -76 381 4 491 349 56 52 chr13 75899377 75899953 -25973216 - HERV16 LTR ERVL -480 5284 4707 1925 184 69 20 chr13 75899967 75900375 -25972794 + MSTA LTR MaLR 1 428 0 1485 118 0 0 chr13 75900382 75900586 -25972583 - AluSc SINE Alu -11 298 95 3158 147 64 8 chr13 75900646 75901253 -25971916 + L1MA5 LINE L1 5643 6283 -17 488 303 62 38 chr13 75901286 75901656 -25971513 + L1PA8 LINE L1 5447 5825 -347 * 2967 203 31 11 chr13 75901325 75901976 -25971193 + L1MB3 LINE L1 5484 6147 -36 370 301 64 13 chr13 75902971 75903127 -25970042 - HERV16 LTR ERVL -2263 3501 3338 2031 326 53 60 chr13 75903135 75904649 -25968520 - HERV16 LTR ERVL -1900 3096 1752 2068 113 13 33 chr13 75905765 75905924 -25967245 - AluSx SINE Alu -17 295 143 2252 85 41 0 chr13 75905924 75906219 -25966950 - AluY SINE Alu 0 311 5 2068 113 13 33 chr13 75906219 75906360 -25966809 - AluSx SINE Alu -169 143 1 185 373 144 0 chr13 75906439 75906557 -25966612 + L2 LINE L2 3137 3271 -1 342 0 0 0 chr13 75906850 75906888 -25966281 + (TA)n Simple_repeat Simple_repeat 1 38 0 2378 72 3 3 chr13 75907544 75907849 -25965320 - AluSc SINE Alu 0 309 5 565 240 48 58 chr13 75908717 75909030 -25964139 + L1MEc LINE L1 1983 2292 -4104 929 261 28 14 chr13 75909086 75909601 -25963568 + L1MEc LINE L1 2476 3156 -3059 468 0 0 0 chr13 75910027 75910079 -25963090 + (TA)n Simple_repeat Simple_repeat 2 53 0 298 303 0 40 chr13 75910976 75911075 -25962094 - MIR3 SINE MIR -26 182 88 1741 158 49 27 chr13 75911257 75911624 -25961545 - THE1C LTR MaLR 0 375 1 37 90 0 0 chr13 75911772 75911872 -25961297 + AT_rich Low_complexity Low_complexity 1 100 0 2216 70 0 3 chr13 75912811 75913123 -25960046 - AluY SINE Alu 0 311 1 28 29 0 0 chr13 75913199 75913234 -25959935 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr13 75913521 75913542 -25959627 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr13 75913806 75913844 -25959325 + AT_rich Low_complexity Low_complexity 1 38 0 249 314 68 42 chr13 75914124 75914360 -25958809 + L1MEc LINE L1 185 426 -5779 671 162 192 48 chr13 75914470 75914637 -25958532 - MER92A LTR ERV1 -7 405 263 573 300 31 22 chr13 75914680 75914907 -25958262 - MER92A LTR ERV1 -183 229 1 27 0 0 0 chr13 75915126 75915153 -25958016 + AT_rich Low_complexity Low_complexity 1 27 0 2237 264 56 74 chr13 75915676 75916728 -25956441 - MER31-int LTR ERV1 -466 4470 3438 2008 201 24 48 chr13 75916729 75917191 -25955978 - MER44D DNA MER2_type -1 604 99 254 246 15 0 chr13 75917329 75917394 -25955775 - MER44D DNA MER2_type -639 66 1 293 289 44 0 chr13 75917604 75917694 -25955475 - MER31-int LTR ERV1 -1668 3268 3175 23 0 0 0 chr13 75917826 75917849 -25955320 + AT_rich Low_complexity Low_complexity 1 23 0 1626 249 2 5 chr13 75918048 75918465 -25954704 + L1MEc LINE L1 3359 3774 -2441 621 66 0 0 chr13 75918507 75918598 -25954571 + (TCTCCC)n Simple_repeat Simple_repeat 1 91 0 970 23 0 76 chr13 75918603 75918775 -25954394 + SVA Other Other 2 160 -1226 686 95 148 89 chr13 75918779 75918812 -25954357 + L1PB1 LINE L1 5929 5959 -192 2240 73 3 13 chr13 75918812 75919112 -25954057 + AluY SINE Alu 1 297 -14 686 95 148 89 chr13 75919112 75919247 -25953922 + L1PB1 LINE L1 5959 6107 -44 203 184 0 0 chr13 75919248 75919286 -25953883 + A-rich Low_complexity Low_complexity 1 38 0 1127 262 23 42 chr13 75919473 75919900 -25953269 - MER31-int LTR ERV1 -1870 3066 2648 2672 280 81 30 chr13 75919945 75920928 -25952241 + L1M4 LINE L1 102 1121 -5738 359 274 0 11 chr13 75921065 75921160 -25952009 - MER92A LTR ERV1 -291 121 28 21 36 0 0 chr13 75921414 75921442 -25951727 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 75921567 75921610 -25951559 + AT_rich Low_complexity Low_complexity 1 43 0 4286 164 33 44 chr13 75921853 75922766 -25950403 - MER4D LTR ERV1 0 903 1 240 35 0 0 chr13 75923512 75923541 -25949628 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr13 75924072 75924095 -25949074 + AT_rich Low_complexity Low_complexity 1 23 0 1197 238 26 102 chr13 75924648 75925148 -25948021 - MLT1C LTR MaLR -5 462 1 280 346 90 13 chr13 75925149 75925305 -25947864 - L2 LINE L2 -1099 2215 2048 315 80 40 0 chr13 75925326 75925376 -25947793 - MLT1D LTR MaLR -14 491 440 953 263 50 11 chr13 75925680 75925958 -25947211 + MER41E LTR ERV1 203 491 -21 1445 232 114 39 chr13 75926138 75926178 -25946991 - MLT2B1 LTR ERVL -2 518 482 234 0 0 0 chr13 75926178 75926204 -25946965 + (TG)n Simple_repeat Simple_repeat 2 27 0 1445 232 114 39 chr13 75926204 75926645 -25946524 - MLT2B1 LTR ERVL -38 482 1 340 224 40 80 chr13 75926652 75926777 -25946392 - L2 LINE L2 -10 3303 3184 21 89 0 0 chr13 75928100 75928156 -25945013 + AT_rich Low_complexity Low_complexity 1 56 0 4190 149 13 13 chr13 75928891 75929601 -25943568 + LTR62 LTR ERVK 8 717 -2 22 0 0 0 chr13 75930343 75930365 -25942804 + AT_rich Low_complexity Low_complexity 1 22 0 36 77 0 0 chr13 75930479 75930557 -25942612 + AT_rich Low_complexity Low_complexity 1 78 0 2165 64 50 0 chr13 75930604 75930887 -25942282 + AluY SINE Alu 1 297 -14 386 138 46 64 chr13 75930912 75931021 -25942148 - L1MA4 LINE L1 0 6300 6194 193 352 14 0 chr13 75932116 75932187 -25940982 - L2 LINE L2 -1 3271 3200 1332 277 83 37 chr13 75932602 75933402 -25939767 + L1ME LINE L1 155 1006 -5074 222 105 0 0 chr13 75933402 75933440 -25939729 + (CA)n Simple_repeat Simple_repeat 1 38 0 1332 277 83 37 chr13 75933440 75933518 -25939651 + L1ME LINE L1 1006 1079 -5001 213 175 0 0 chr13 75933565 75933605 -25939564 + (CA)n Simple_repeat Simple_repeat 2 41 0 234 236 18 0 chr13 75933749 75933804 -25939365 + (TA)n Simple_repeat Simple_repeat 1 56 0 258 266 19 52 chr13 75934255 75934409 -25938760 - L1MC4 LINE L1 -776 7266 7118 1969 190 26 34 chr13 75935079 75935631 -25937538 + MLT2A2 LTR ERVL 1 545 -9 27 0 0 0 chr13 75935757 75935784 -25937385 + AT_rich Low_complexity Low_complexity 1 27 0 1927 212 55 5 chr13 75935869 75936308 -25936861 - LOR1b LTR ERV1 0 461 1 565 143 11 0 chr13 75936308 75936399 -25936770 - LOR1b-int LTR ERV1 0 8120 8029 1413 89 47 5 chr13 75936419 75936632 -25936537 - LOR1b-int LTR ERV1 -2117 6003 5782 * 11651 119 40 9 chr13 75936613 75938513 -25934656 - LOR1b-int LTR ERV1 -2597 5523 3564 2102 193 137 145 chr13 75938513 75939512 -25933657 + LTR28 LTR ERV1 1 991 -29 9667 116 18 17 chr13 75939694 75940510 -25932659 - LOR1b-int LTR ERV1 -4552 3568 2755 2049 112 0 0 chr13 75940510 75940786 -25932383 + AluSc SINE Alu 1 276 -33 180 0 0 0 chr13 75940788 75940808 -25932361 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 9667 116 18 17 chr13 75940808 75941572 -25931597 - LOR1b-int LTR ERV1 -5365 2755 1983 7175 136 45 49 chr13 75941579 75943154 -25930015 - LOR1b-int LTR ERV1 -6112 2008 439 195 42 0 0 chr13 75943154 75943178 -25929991 + (CA)n Simple_repeat Simple_repeat 1 24 0 7175 136 45 49 chr13 75943178 75943616 -25929553 - LOR1b-int LTR ERV1 -7681 439 1 2194 178 35 0 chr13 75943616 75944015 -25929154 - LOR1b LTR ERV1 0 461 49 1901 115 52 3 chr13 75944406 75944692 -25928477 + AluSp SINE Alu 1 300 -13 249 326 37 15 chr13 75944762 75944897 -25928272 - L1MCc LINE L1 -5488 935 798 * 788 287 72 49 chr13 75944888 75945061 -25928108 + L1MCc LINE L1 936 1103 -5720 2127 106 3 0 chr13 75945061 75945343 -25927826 + AluSp SINE Alu 1 283 -30 444 19 0 0 chr13 75945351 75945404 -25927765 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 788 287 72 49 chr13 75945404 75945510 -25927659 + L1MCc LINE L1 1109 1211 -5612 2003 141 3 13 chr13 75945510 75945822 -25927347 + AluSg SINE Alu 1 309 -1 788 287 72 49 chr13 75945822 75946519 -25926650 + L1MCc LINE L1 1211 1936 -4887 227 274 75 0 chr13 75946545 75946651 -25926518 + L1MCc LINE L1 1982 2095 -4846 279 282 169 41 chr13 75946657 75947172 -25925997 + L1MCc LINE L1 3897 4477 -2464 708 186 12 17 chr13 75947175 75947347 -25925822 + L1MC3 LINE L1 7607 7777 -8 * 946 317 53 12 chr13 75947333 75948012 -25925157 + L1MCc LINE L1 4791 5497 -1444 1870 60 7 60 chr13 75948209 75948494 -25924675 + L1PA6 LINE L1 5763 6032 -122 1130 221 58 18 chr13 75948502 75948778 -25924391 + LTR26E LTR ERV1 130 416 -206 736 193 0 0 chr13 75951557 75951676 -25921493 + MER20 DNA MER1_type 101 219 0 447 323 0 6 chr13 75952359 75952523 -25920646 + LTR16A1 LTR ERVL 295 457 0 969 324 66 68 chr13 75953063 75953549 -25919620 + HERV16 LTR ERVL 691 1177 -3819 1866 149 3 13 chr13 75953549 75953851 -25919318 - AluSx SINE Alu -13 299 1 969 324 66 68 chr13 75953851 75954164 -25919005 + HERV16 LTR ERVL 1177 1489 -3507 819 154 26 0 chr13 75954329 75954556 -25918613 + CT-rich Low_complexity Low_complexity 1 233 0 928 220 86 52 chr13 75954564 75954855 -25918314 - AluJb SINE Alu -1 301 1 25 65 0 0 chr13 75955215 75955261 -25917908 + AT_rich Low_complexity Low_complexity 1 46 0 2220 96 3 3 chr13 75955661 75955963 -25917206 - AluSc SINE Alu -7 302 1 225 115 16 49 chr13 75956349 75956410 -25916759 + (TAA)n Simple_repeat Simple_repeat 1 59 0 1314 225 54 14 chr13 75956891 75957242 -25915927 + MLT1A1 LTR MaLR 1 365 0 239 54 27 0 chr13 75957829 75957866 -25915303 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 473 271 53 0 chr13 75958757 75958908 -25914261 - MLT2C1 LTR ERVL -167 230 72 21 0 0 0 chr13 75959242 75959263 -25913906 + AT_rich Low_complexity Low_complexity 1 21 0 226 317 12 0 chr13 75960235 75960317 -25912852 + LTR50 LTR ERVL 1 83 -712 1251 269 111 54 chr13 75962342 75962430 -25910739 - L1MC4a LINE L1 -95 7713 7631 1535 161 63 11 chr13 75962430 75962715 -25910454 + AluJo SINE Alu 1 300 -12 1251 269 111 54 chr13 75962715 75963628 -25909541 - L1MC4a LINE L1 -177 7631 6613 1705 205 0 0 chr13 75964534 75964836 -25908333 - AluJo SINE Alu -10 302 1 1919 197 109 4 chr13 75965476 75965933 -25907236 + L1MB7 LINE L1 5660 6164 -20 3116 188 33 16 chr13 75967560 75968172 -25904997 - LTR26E LTR ERV1 0 622 1 1456 148 31 119 chr13 75968531 75968883 -25904286 - MER4D LTR ERV1 0 903 583 2392 174 133 12 chr13 75968985 75969502 -25903667 - MER4D LTR ERV1 -283 620 41 2378 163 93 87 chr13 75969502 75969579 -25903590 - LTR8A LTR ERV1 0 727 652 3002 144 96 14 chr13 75969579 75970143 -25903026 + MER4B LTR ERV1 1 610 0 2378 163 93 87 chr13 75970143 75970788 -25902381 - LTR8A LTR ERV1 -75 652 1 258 179 18 18 chr13 75970788 75970831 -25902338 - MER4D LTR ERV1 -860 43 1 277 255 0 75 chr13 75971126 75971220 -25901949 - MIR3 SINE MIR -113 95 9 502 188 21 10 chr13 75971283 75971379 -25901790 + MER4A LTR ERV1 1 97 -567 1440 188 3 74 chr13 75971380 75971752 -25901417 + MER4A LTR ERV1 261 664 0 2064 136 0 0 chr13 75973014 75973323 -25899846 + AluSx SINE Alu 1 309 -3 209 189 38 0 chr13 75975001 75975054 -25898115 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 397 351 46 31 chr13 75975169 75975559 -25897610 + L1M4 LINE L1 2202 2597 -3549 226 257 0 14 chr13 75975580 75975650 -25897519 + (TAAA)n Simple_repeat Simple_repeat 4 72 0 206 267 0 33 chr13 75975627 75975687 -25897482 + GA-rich Low_complexity Low_complexity 3 60 0 * 233 255 85 21 chr13 75975897 75975991 -25897178 - MLT1I LTR MaLR -2 407 308 459 0 0 0 chr13 75977502 75977553 -25895616 + (CA)n Simple_repeat Simple_repeat 2 52 0 206 278 56 83 chr13 75977844 75977952 -25895217 + MIR3 SINE MIR 99 203 -5 223 234 31 0 chr13 75978578 75978642 -25894527 - L2 LINE L2 -101 3212 3147 1486 169 15 0 chr13 75978651 75978911 -25894258 - L1M3 LINE L1 -593 5741 5478 21 0 0 0 chr13 76030045 76030066 -25843103 + AT_rich Low_complexity Low_complexity 1 21 0 308 308 68 0 chr13 76030213 76030359 -25842810 + L2 LINE L2 2473 2628 -686 3185 249 45 18 chr13 76030384 76031037 -25842132 - L1MB2 LINE L1 -7 6164 5530 195 42 0 0 chr13 76031037 76031061 -25842108 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3185 249 45 18 chr13 76031061 76031666 -25841503 - L1MB2 LINE L1 -641 5530 4871 2349 61 20 0 chr13 76031792 76032086 -25841083 - AluY SINE Alu -11 300 1 225 0 0 0 chr13 76032121 76032146 -25841023 + (TG)n Simple_repeat Simple_repeat 2 26 0 247 298 53 0 chr13 76032201 76032315 -25840854 - L1MDa LINE L1 -4550 1990 1871 405 211 0 0 chr13 76032564 76032635 -25840534 + Tigger5 DNA MER2_type 2251 2321 -2 4602 102 6 23 chr13 76032999 76033317 -25839852 + L1PA10 LINE L1 5466 5788 -380 2295 75 0 3 chr13 76033317 76033611 -25839558 + AluY SINE Alu 1 293 -18 4602 102 6 23 chr13 76033611 76033995 -25839174 + L1PA10 LINE L1 5788 6156 -12 2372 69 3 0 chr13 76033999 76034290 -25838879 - AluY SINE Alu -19 292 1 21 0 0 0 chr13 76034290 76034311 -25838858 + AT_rich Low_complexity Low_complexity 1 21 0 390 211 20 136 chr13 76034324 76034523 -25838646 + L1MA10 LINE L1 6157 6332 -2 2379 271 41 22 chr13 76034575 76035736 -25837433 + L1M4c LINE L1 2256 3437 -2945 237 32 0 0 chr13 76036614 76036645 -25836524 + MADE1 DNA Mariner 33 63 -17 22 0 0 0 chr13 76037056 76037078 -25836091 + AT_rich Low_complexity Low_complexity 1 22 0 1610 159 0 24 chr13 76037266 76037555 -25835614 + AluSx SINE Alu 1 282 -30 218 286 9 71 chr13 76037837 76037949 -25835220 - MIR SINE MIR -61 201 97 1832 271 5 14 chr13 76037992 76038565 -25834604 - L1M1 LINE L1 -4283 3282 2715 596 221 0 34 chr13 76038577 76038726 -25834443 + L1MA8 LINE L1 6140 6283 -8 1461 309 40 22 chr13 76039810 76040442 -25832727 + L1ME1 LINE L1 5491 6133 -33 213 169 0 0 chr13 76040456 76040515 -25832654 + (TA)n Simple_repeat Simple_repeat 2 60 0 2163 308 87 74 chr13 76040579 76040591 -25832578 - L2 LINE L2 -1145 2169 2159 389 76 15 0 chr13 76040591 76040657 -25832512 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2163 308 87 74 chr13 76040657 76042266 -25830903 - L2 LINE L2 -1155 2159 527 1472 215 91 13 chr13 76042268 76042699 -25830470 + MLT2B2 LTR ERVL 1 514 -1 1253 199 134 7 chr13 76042893 76043238 -25829931 - MER67C LTR ERV1 -239 275 1 485 295 52 105 chr13 76043295 76043380 -25829789 - L2 LINE L2 -2915 399 311 1483 182 120 42 chr13 76043380 76043804 -25829365 + MSTB2 LTR MaLR 1 457 0 485 295 52 105 chr13 76043804 76044118 -25829051 - L2 LINE L2 -3003 311 21 270 0 0 0 chr13 76045281 76045311 -25827858 + (CA)n Simple_repeat Simple_repeat 2 31 0 730 181 12 58 chr13 76045548 76045719 -25827450 - MSTB2 LTR MaLR 0 457 295 29 0 0 0 chr13 76046539 76046568 -25826601 + AT_rich Low_complexity Low_complexity 1 29 0 8157 53 1 0 chr13 76046576 76047541 -25825628 - LTR5 LTR ERVK -3 966 1 709 233 0 0 chr13 76047558 76047687 -25825482 - FLAM_A SINE Alu -4 129 1 21 71 0 0 chr13 76047831 76047873 -25825296 + AT_rich Low_complexity Low_complexity 1 42 0 1906 154 157 5 chr13 76048219 76048589 -25824580 - MSTA LTR MaLR 0 428 3 633 272 115 18 chr13 76048740 76049281 -25823888 + L1MCc LINE L1 1154 1743 -4899 335 230 0 2 chr13 76049352 76049444 -25823725 + L1MC4 LINE L1 5754 5841 -325 1716 155 28 3 chr13 76049445 76049736 -25823433 - MLT2A2 LTR ERVL -155 298 1 1915 276 112 67 chr13 76049736 76050626 -25822543 + L1MC4 LINE L1 5854 6703 -1339 292 32 81 0 chr13 76050626 76050688 -25822481 + (TA)n Simple_repeat Simple_repeat 2 68 0 1915 276 112 67 chr13 76050688 76051292 -25821877 + L1MC4 LINE L1 6703 7447 -595 13685 146 21 23 chr13 76051292 76053713 -25819456 - Tigger1 DNA MER2_type 0 2418 1 1915 276 112 67 chr13 76053713 76054045 -25819124 + L1MC4 LINE L1 7447 7763 -279 256 305 70 8 chr13 76054235 76054363 -25818806 + L1MD3 LINE L1 7851 7986 -9 201 125 50 0 chr13 76056244 76056284 -25816885 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 342 172 0 23 chr13 76056311 76056398 -25816771 - L1MA7 LINE L1 0 6291 6207 1720 188 0 16 chr13 76056510 76056819 -25816350 + AluJb SINE Alu 3 306 -6 4819 171 17 38 chr13 76057584 76059292 -25813877 - L1MA4A LINE L1 -92 7630 5951 1929 144 68 8 chr13 76059292 76059646 -25813523 + THE1C LTR MaLR 1 375 0 4819 171 17 38 chr13 76059646 76059738 -25813431 - L1MA4A LINE L1 -1771 5951 5859 3083 195 106 46 chr13 76059754 76060489 -25812680 - L1MA4A LINE L1 -6777 788 10 * 7557 237 43 9 chr13 76060483 76062216 -25810953 - L1M2 LINE L1 -5056 1793 1 308 368 25 29 chr13 76062539 76062743 -25810426 - LTR16B LTR ERVL -254 210 8 260 266 73 28 chr13 76063071 76063180 -25809989 - HERV16 LTR ERVL -328 4668 4555 294 322 42 8 chr13 76063310 76063428 -25809741 - MERVL LTR ERVL -626 4859 4738 301 301 35 35 chr13 76063527 76063670 -25809499 - MERVL LTR ERVL -1117 4647 4505 874 210 87 6 chr13 76063994 76064411 -25808758 + LTR54B LTR ERV1 1 497 -1 541 367 77 6 chr13 76065231 76065544 -25807625 - LTR16B LTR ERVL -95 369 35 261 0 0 0 chr13 76066095 76066124 -25807045 + (TG)n Simple_repeat Simple_repeat 2 30 0 347 280 73 57 chr13 76066137 76066509 -25806660 + L1M4 LINE L1 3497 3874 -2272 776 291 22 82 chr13 76067600 76068150 -25805019 + L1M4 LINE L1 3427 3943 -2203 444 308 69 25 chr13 76068151 76068512 -25804657 + L1M4 LINE L1 4109 4485 -1661 27 29 0 0 chr13 76068512 76068546 -25804623 + AT_rich Low_complexity Low_complexity 1 34 0 3763 94 6 0 chr13 76068700 76069245 -25803924 + L1PA7 LINE L1 5604 6151 -3 1343 151 135 4 chr13 76070811 76071070 -25802099 + AluJb SINE Alu 1 293 -19 1705 197 15 9 chr13 76071851 76072191 -25800978 - MER2 DNA MER2_type -1 343 2 1102 244 70 46 chr13 76072427 76072800 -25800369 - MLT1B LTR MaLR 0 390 9 2121 112 7 0 chr13 76072832 76073127 -25800042 + AluSp SINE Alu 1 297 -16 194 219 324 9 chr13 76073416 76073521 -25799648 + MIR3 SINE MIR 4 141 -67 3405 86 94 8 chr13 76073529 76074062 -25799107 - LTR19B LTR ERV1 -1 579 1 1997 125 0 16 chr13 76074191 76074504 -25798665 - AluY SINE Alu -3 308 1 1487 208 25 68 chr13 76074534 76074934 -25798235 - MLT1B LTR MaLR -7 383 1 21 57 0 0 chr13 76075490 76075525 -25797644 + AT_rich Low_complexity Low_complexity 1 35 0 353 201 15 60 chr13 76076127 76076261 -25796908 + (TA)n Simple_repeat Simple_repeat 2 129 0 1924 157 0 6 chr13 76076374 76076686 -25796483 - AluSx SINE Alu 0 312 3 450 255 48 24 chr13 76076716 76076924 -25796245 - L1M4 LINE L1 -3281 2865 2653 270 235 106 35 chr13 76077398 76077483 -25795686 + MER96B DNA MER1_type? 327 417 0 612 244 0 0 chr13 76077539 76077666 -25795503 - FLAM_C SINE Alu -16 127 1 3557 214 27 6 chr13 76078934 76079639 -25793530 + MER44D DNA MER2_type 1 592 -13 24 32 0 0 chr13 76079966 76079997 -25793172 + AT_rich Low_complexity Low_complexity 1 31 0 1667 157 159 16 chr13 76080424 76080794 -25792375 + MSTA LTR MaLR 3 425 -3 599 261 139 45 chr13 76081413 76081880 -25791289 + L1ME LINE L1 5265 5775 -387 2378 138 6 3 chr13 76081990 76082353 -25790816 - THE1B LTR MaLR 0 364 1 376 341 109 23 chr13 76082494 76082796 -25790373 - L2 LINE L2 -98 3215 2888 1196 194 177 0 chr13 76082814 76083102 -25790067 + MER44D DNA MER2_type 1 609 0 1091 217 156 34 chr13 76083135 76083445 -25789724 + MLT1A2 LTR MaLR 2 355 -19 1990 133 39 30 chr13 76083445 76083806 -25789363 + THE1B LTR MaLR 1 364 0 1091 217 156 34 chr13 76083806 76083822 -25789347 + MLT1A2 LTR MaLR 355 368 -6 418 354 96 17 chr13 76083831 76084071 -25789098 - L2 LINE L2 -492 2822 2564 299 321 266 17 chr13 76084150 76084387 -25788782 - L2 LINE L2 -150 3163 2868 196 319 218 37 chr13 76084392 76084768 -25788401 - L2 LINE L2 -1555 1759 1316 541 230 137 7 chr13 76084819 76084958 -25788211 - MER5B DNA MER1_type -1 177 21 231 365 51 7 chr13 76085008 76085145 -25788024 - L2 LINE L2 -2065 1249 1107 776 365 41 3 chr13 76085249 76085589 -25787580 - L2 LINE L2 -2890 424 72 1928 201 38 0 chr13 76085619 76086038 -25787131 + L1 LINE L1 4676 5110 -1036 7104 210 68 32 chr13 76086045 76088114 -25785055 - L1 LINE L1 -1753 5812 3670 1942 171 117 8 chr13 76088116 76088502 -25784667 - MSTA LTR MaLR 0 428 1 5627 188 10 10 chr13 76088502 76089514 -25783655 - MSTA-int LTR MaLR 0 1580 569 3427 256 46 41 chr13 76089523 76090654 -25782515 - L1 LINE L1 -5741 1824 14 430 305 70 21 chr13 76092245 76092432 -25780737 - MLT1K LTR MaLR -74 514 319 292 203 14 0 chr13 76093323 76093397 -25779772 + (TA)n Simple_repeat Simple_repeat 2 76 0 1840 246 145 29 chr13 76093402 76094093 -25779076 - LTR48 LTR ERV1 0 787 17 183 42 0 0 chr13 76094138 76094162 -25779007 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr13 76094457 76094485 -25778684 + AT_rich Low_complexity Low_complexity 1 28 0 443 312 60 71 chr13 76094810 76095092 -25778077 + LTR16C LTR ERVL 38 316 -175 37 97 0 0 chr13 76096213 76096327 -25776842 + AT_rich Low_complexity Low_complexity 1 114 0 215 262 16 41 chr13 76097361 76097483 -25775686 + (CATATA)n Simple_repeat Simple_repeat 5 123 0 * 318 241 25 25 chr13 76097392 76097550 -25775619 + (TA)n Simple_repeat Simple_repeat 1 158 0 390 21 0 0 chr13 76097553 76097600 -25775569 + (TG)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr13 76099980 76100002 -25773167 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr13 76100137 76100172 -25772997 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 76100935 76100963 -25772206 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 76101036 76101066 -25772103 + AT_rich Low_complexity Low_complexity 1 30 0 255 364 0 11 chr13 76102232 76102320 -25770849 - L2 LINE L2 -4 3268 3182 24 0 0 0 chr13 76102570 76102594 -25770575 + AT_rich Low_complexity Low_complexity 1 24 0 25 83 0 0 chr13 76102762 76102822 -25770347 + AT_rich Low_complexity Low_complexity 1 60 0 234 232 0 18 chr13 76103826 76103882 -25769287 + (TA)n Simple_repeat Simple_repeat 2 56 0 254 304 29 0 chr13 76104109 76104178 -25768991 - MLT1I LTR MaLR -177 232 162 2643 107 3 0 chr13 76105592 76105955 -25767214 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr13 76106310 76106331 -25766838 + AT_rich Low_complexity Low_complexity 1 21 0 259 277 143 59 chr13 76106613 76106855 -25766314 + MIR3 SINE MIR 4 261 -1 261 0 0 0 chr13 76107296 76107325 -25765844 + (TG)n Simple_repeat Simple_repeat 2 30 0 190 177 16 16 chr13 76107327 76107389 -25765780 + GA-rich Low_complexity Low_complexity 2 63 0 2826 3 0 0 chr13 76108140 76108449 -25764720 - AluYa5 SINE Alu -2 309 1 21 0 0 0 chr13 76109449 76109470 -25763699 + AT_rich Low_complexity Low_complexity 1 21 0 997 306 30 54 chr13 76110074 76110578 -25762591 - MLT1H LTR MaLR 0 549 58 332 22 22 0 chr13 76110753 76110798 -25762371 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr13 76110912 76110942 -25762227 + AT_rich Low_complexity Low_complexity 1 30 0 544 171 27 7 chr13 76111072 76111218 -25761951 + CT-rich Low_complexity Low_complexity 3 151 0 24 0 0 0 chr13 76111248 76111272 -25761897 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 76111321 76111342 -25761827 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 76111486 76111510 -25761659 + AT_rich Low_complexity Low_complexity 1 24 0 488 235 53 80 chr13 76112474 76112661 -25760508 - MER20 DNA MER1_type -37 182 1 24 32 0 0 chr13 76113153 76113184 -25759985 + AT_rich Low_complexity Low_complexity 1 31 0 1510 212 0 0 chr13 76113251 76113548 -25759621 - AluJb SINE Alu -15 297 1 2196 47 0 15 chr13 76114390 76114664 -25758505 + AluY SINE Alu 5 274 -37 550 251 47 35 chr13 76114764 76114935 -25758234 + MIR SINE MIR 47 219 -43 2303 78 3 0 chr13 76114945 76115240 -25757929 + AluY SINE Alu 1 296 -15 2438 89 0 0 chr13 76115345 76115648 -25757521 + AluSx SINE Alu 1 303 -9 232 274 81 24 chr13 76115850 76115974 -25757195 + L1MEd LINE L1 1025 1155 -4964 353 330 47 60 chr13 76116082 76116253 -25756916 + HAL1 LINE L1 1401 1570 -937 2347 163 19 30 chr13 76116253 76116719 -25756450 - LOR1b LTR ERV1 0 461 1 353 330 47 60 chr13 76116719 76116780 -25756389 + HAL1 LINE L1 1570 1630 -877 26 30 0 0 chr13 76116805 76116838 -25756331 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 76117429 76117451 -25755718 + AT_rich Low_complexity Low_complexity 1 22 0 612 310 57 53 chr13 76118975 76119656 -25753513 + L1MEc LINE L1 1010 1693 -4703 239 242 15 0 chr13 76120018 76120084 -25753085 + A-rich Low_complexity Low_complexity 4 70 0 22 35 0 0 chr13 76120194 76120223 -25752946 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 76122139 76122164 -25751005 + AT_rich Low_complexity Low_complexity 1 25 0 543 246 8 8 chr13 76122753 76122871 -25750298 - MER3 DNA MER1_type -91 118 1 947 254 123 11 chr13 76122974 76123325 -25749844 - MLT1B LTR MaLR 0 390 1 254 317 122 22 chr13 76124542 76124722 -25748447 - MIR SINE MIR -5 257 60 21 0 0 0 chr13 76126283 76126304 -25746865 + AT_rich Low_complexity Low_complexity 1 21 0 239 204 45 11 chr13 76126416 76126504 -25746665 + (TA)n Simple_repeat Simple_repeat 2 92 0 21 57 0 0 chr13 76126751 76126786 -25746383 + AT_rich Low_complexity Low_complexity 1 35 0 5886 157 47 42 chr13 76126805 76127960 -25745209 - L1M1 LINE L1 -539 5763 4591 1950 116 20 3 chr13 76127960 76128253 -25744916 + AluSg SINE Alu 1 298 -12 5886 157 47 42 chr13 76128253 76128887 -25744282 - L1M1 LINE L1 -1711 4591 3961 1270 199 17 34 chr13 76128907 76129199 -25743970 - AluJb SINE Alu -25 287 1 388 240 58 0 chr13 76129248 76129369 -25743800 - L1M1 LINE L1 -2180 3966 3839 1932 134 14 7 chr13 76131151 76131441 -25741728 + AluSx SINE Alu 1 292 -20 871 206 50 20 chr13 76131548 76131747 -25741422 + MLT1A1 LTR MaLR 5 209 -156 553 168 11 0 chr13 76131742 76131837 -25741332 - 5S rRNA rRNA -24 97 2 * 593 244 64 12 chr13 76131824 76131996 -25741173 + MLT1A1 LTR MaLR 194 374 0 575 324 147 24 chr13 76132006 76132386 -25740783 + L2 LINE L2 2839 3265 -48 27 29 0 0 chr13 76133040 76133074 -25740095 + AT_rich Low_complexity Low_complexity 1 34 0 1891 216 17 66 chr13 76133404 76133932 -25739237 + MLT1D LTR MaLR 1 502 -3 910 196 0 6 chr13 76134028 76134186 -25738983 - FRAM SINE Alu -20 156 1 227 255 75 9 chr13 76134925 76135031 -25738138 - L1 LINE L1 -1071 5075 4963 239 313 40 40 chr13 76135707 76135806 -25737363 + L2 LINE L2 3193 3291 -22 21 57 0 0 chr13 76136040 76136075 -25737094 + AT_rich Low_complexity Low_complexity 1 35 0 3610 244 45 19 chr13 76136234 76138115 -25735054 + L1MD1 LINE L1 4312 6242 0 307 324 34 14 chr13 76138124 76138272 -25734897 + L1MEd LINE L1 981 1131 -4988 7403 42 5 0 chr13 76138527 76140210 -25732959 - L1PA5 LINE L1 0 6154 4467 6632 31 0 1 chr13 76140210 76141005 -25732164 + L1PA5 LINE L1 3652 4445 -1701 2087 124 0 0 chr13 76141185 76141476 -25731693 + AluSx SINE Alu 1 291 -21 347 415 12 25 chr13 76141492 76141815 -25731354 + L1MEc LINE L1 46 364 -6032 577 190 0 109 chr13 76142947 76143121 -25730048 - Tigger2 DNA MER2_type 0 2718 2564 923 200 5 37 chr13 76143122 76143337 -25729832 - Tigger2 DNA MER2_type -2510 208 1 1851 155 0 3 chr13 76143887 76144184 -25728985 + AluSg SINE Alu 1 296 -14 21 0 0 0 chr13 76144264 76144285 -25728884 + AT_rich Low_complexity Low_complexity 1 21 0 1271 241 80 40 chr13 76146118 76146567 -25726602 - MLT1C LTR MaLR 0 467 1 2118 105 7 0 chr13 76146776 76147061 -25726108 + AluSx SINE Alu 1 287 -25 11644 150 48 5 chr13 76147152 76149173 -25723996 - Tigger1 DNA MER2_type -2 2416 308 978 41 0 0 chr13 76149174 76149295 -25723874 - L1PA5 LINE L1 -182 5972 5852 20215 91 12 3 chr13 76149307 76152048 -25721121 - HERVL-A2 LTR ERVL -2890 2764 1 3018 94 44 7 chr13 76152048 76152484 -25720685 - MLT2A2 LTR ERVL 0 453 2 220 164 30 45 chr13 76152644 76152711 -25720458 + A-rich Low_complexity Low_complexity 1 66 0 507 377 45 0 chr13 76153092 76153270 -25719899 + HAL1 LINE L1 340 535 -1972 3560 37 0 0 chr13 76153270 76153707 -25719462 - L1PA4 LINE L1 -1 6154 5718 507 377 45 0 chr13 76153707 76153793 -25719376 + HAL1 LINE L1 535 616 -1891 354 318 99 15 chr13 76153839 76154040 -25719129 + HAL1 LINE L1 1240 1457 -1050 215 268 18 0 chr13 76154065 76154121 -25719048 + MIR SINE MIR 195 251 -11 1400 92 0 29 chr13 76154128 76154335 -25718834 - AluY SINE Alu -1 310 110 2285 143 22 3 chr13 76155649 76156006 -25717163 + THE1B LTR MaLR 1 364 0 892 250 38 31 chr13 76156031 76156319 -25716850 + L1MA10 LINE L1 6038 6327 -7 5527 123 19 1 chr13 76156545 76158081 -25715088 + L1PA13 LINE L1 4629 6160 -3 1899 176 0 6 chr13 76158413 76158726 -25714443 + AluSx SINE Alu 1 311 -1 1990 168 16 19 chr13 76158800 76159164 -25714005 - THE1B LTR MaLR -1 363 1 276 111 0 0 chr13 76159601 76159646 -25713523 + (CA)n Simple_repeat Simple_repeat 2 46 0 360 0 0 0 chr13 76159823 76159863 -25713306 + (TG)n Simple_repeat Simple_repeat 1 40 0 270 0 0 0 chr13 76159862 76159892 -25713277 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 1168 224 94 0 chr13 76159892 76160023 -25713146 - AluJo SINE Alu -34 278 161 1969 128 7 0 chr13 76160023 76160321 -25712848 + AluSc SINE Alu 3 302 -7 1168 224 94 0 chr13 76160321 76160443 -25712726 - AluJo SINE Alu -151 161 1 289 260 31 31 chr13 76160443 76160539 -25712630 + L2 LINE L2 3215 3310 -3 593 299 32 11 chr13 76161911 76162098 -25711071 - MER58A DNA MER1_type -25 199 9 466 180 40 10 chr13 76163146 76163246 -25709923 + MER67D LTR ERV1 1 103 -411 1141 295 49 18 chr13 76163370 76163940 -25709229 + L1MC5 LINE L1 7003 7590 -371 23 54 0 0 chr13 76163942 76163979 -25709190 + AT_rich Low_complexity Low_complexity 1 37 0 383 271 106 18 chr13 76164018 76164188 -25708981 + L1MC4 LINE L1 7717 7901 -141 1447 192 23 89 chr13 76164560 76164987 -25708182 + L1MA9 LINE L1 5883 6281 -31 24 53 0 0 chr13 76164987 76165025 -25708144 + AT_rich Low_complexity Low_complexity 1 38 0 1119 221 48 14 chr13 76165367 76165742 -25707427 + L1M2 LINE L1 4997 5385 -774 1860 141 3 0 chr13 76165746 76166036 -25707133 + L1M2 LINE L1 5445 5735 -556 234 208 0 0 chr13 76166091 76166144 -25707025 + GA-rich Low_complexity Low_complexity 2 54 0 239 30 0 0 chr13 76166829 76166862 -25706307 - Alu SINE Alu -8 300 268 23 54 0 0 chr13 76169508 76169545 -25703624 + AT_rich Low_complexity Low_complexity 1 37 0 25 83 0 0 chr13 76170489 76170549 -25702620 + AT_rich Low_complexity Low_complexity 1 60 0 2653 174 49 57 chr13 76171688 76172285 -25700884 + LTR9 LTR ERV1 1 592 -20 25 0 0 0 chr13 76174150 76174175 -25698994 + AT_rich Low_complexity Low_complexity 1 25 0 38 39 0 0 chr13 76174635 76174687 -25698482 + AT_rich Low_complexity Low_complexity 1 52 0 392 259 77 73 chr13 76174693 76174952 -25698217 + MIR SINE MIR 3 262 0 23 54 0 0 chr13 76175044 76175081 -25698088 + AT_rich Low_complexity Low_complexity 1 37 0 238 216 20 0 chr13 76175962 76176013 -25697156 - MLT1K LTR MaLR -379 209 158 350 313 54 20 chr13 76176548 76176695 -25696474 - MIR SINE MIR -79 183 32 305 370 109 17 chr13 76177383 76177786 -25695383 + HAL1 LINE L1 1470 1909 -598 26 50 0 0 chr13 76178444 76178484 -25694685 + AT_rich Low_complexity Low_complexity 1 40 0 1623 261 66 36 chr13 76178554 76179052 -25694117 - MER21B LTR ERV1 -287 576 64 2647 27 0 0 chr13 76179058 76179358 -25693811 + AluY SINE Alu 1 300 -11 285 326 0 22 chr13 76179400 76179489 -25693680 - MER21B LTR ERV1 -775 88 2 2946 204 32 17 chr13 76179490 76180151 -25693018 - MLT1B-int LTR MaLR -698 673 3 1311 246 22 13 chr13 76180188 76180501 -25692668 - MLT1B LTR MaLR -74 316 1 337 315 32 58 chr13 76180943 76181154 -25692015 - MLT1I LTR MaLR -123 286 101 189 0 0 0 chr13 76183234 76183255 -25689914 + (TC)n Simple_repeat Simple_repeat 2 22 0 253 267 17 0 chr13 76183361 76183421 -25689748 + L2 LINE L2 3241 3301 -12 1201 289 103 0 chr13 76185571 76185910 -25687259 + MER45C DNA AcHobo 1 374 -579 278 269 51 0 chr13 76185938 76186016 -25687153 + MER45C DNA AcHobo 439 520 -433 284 319 156 0 chr13 76186225 76186385 -25686784 - LTR50 LTR ERVL -522 273 89 1537 152 137 56 chr13 76186974 76187368 -25685801 - MSTA LTR MaLR 0 428 3 282 275 126 36 chr13 76187882 76188098 -25685071 - L1MDa LINE L1 -4559 1867 1696 327 302 160 23 chr13 76188121 76188465 -25684704 - L1MDa LINE L1 -4900 1526 1136 2147 157 50 33 chr13 76188641 76189062 -25684107 + MSTA LTR MaLR 1 428 0 44 56 0 0 chr13 76189163 76189235 -25683934 + AT_rich Low_complexity Low_complexity 1 72 0 2798 198 30 2 chr13 76189849 76190421 -25682748 - L1MC3 LINE L1 -59 7726 7139 2290 226 47 71 chr13 76190519 76191421 -25681748 - L1MCb LINE L1 -4434 2130 1176 2232 121 0 0 chr13 76191421 76191726 -25681443 - AluSx SINE Alu -7 305 1 2290 226 47 71 chr13 76191726 76192319 -25680850 - L1MCb LINE L1 -5388 1176 570 180 0 0 0 chr13 76195280 76195300 -25677869 + (TA)n Simple_repeat Simple_repeat 1 20 0 479 280 40 0 chr13 76195668 76195818 -25677351 + MER105 DNA DNA 2 157 -47 21 0 0 0 chr13 76195927 76195948 -25677221 + AT_rich Low_complexity Low_complexity 1 21 0 2146 102 0 3 chr13 76195948 76196243 -25676926 - AluSq SINE Alu -19 294 1 672 314 113 33 chr13 76196245 76197089 -25676080 - L1MEc LINE L1 -4482 1914 1004 313 341 57 68 chr13 76197158 76197527 -25675642 - L1MEc LINE L1 -5699 697 333 1428 260 105 22 chr13 76197869 76198372 -25674797 - LTR38 LTR ERV1 -11 545 1 551 250 66 35 chr13 76198985 76199213 -25673956 + L1ME1 LINE L1 5321 5555 -609 1974 101 0 40 chr13 76199222 76199519 -25673650 + AluY SINE Alu 5 289 -22 440 239 128 122 chr13 76199520 76199880 -25673289 - L1M4 LINE L1 -1712 4434 4073 250 193 0 18 chr13 76199944 76200001 -25673168 - L1M4 LINE L1 -2195 3951 3896 371 307 109 48 chr13 76200078 76200537 -25672632 - L1M4 LINE L1 -2275 3871 3385 720 256 79 20 chr13 76200556 76200961 -25672208 + L1ME1 LINE L1 5723 6166 0 3614 59 28 167 chr13 76201665 76202373 -25670796 - LTR66 LTR ERVL 0 610 1 266 350 102 20 chr13 76202560 76202757 -25670412 + HERV16 LTR ERVL 989 1201 -3795 2298 71 0 3 chr13 76203460 76203757 -25669412 - AluY SINE Alu -15 296 1 2670 13 0 7 chr13 76203954 76204258 -25668911 + AluYa5 SINE Alu 1 302 -9 216 0 0 0 chr13 76204324 76204348 -25668821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 413 175 41 21 chr13 76204400 76204497 -25668672 - ERVL LTR ERVL -2569 3195 3097 184 394 16 16 chr13 76204504 76204631 -25668538 + MIR SINE MIR 57 183 -79 279 326 171 12 chr13 76205853 76206111 -25667058 + L2 LINE L2 2447 2745 -569 272 317 30 0 chr13 76206277 76206378 -25666791 - MIR SINE MIR -111 151 48 961 276 97 53 chr13 76207287 76207855 -25665314 + MLT1E LTR MaLR 1 593 0 331 186 78 37 chr13 76208806 76208918 -25664251 - L1ME1 LINE L1 0 6166 6048 229 276 13 0 chr13 76209433 76209509 -25663660 + T-rich Low_complexity Low_complexity 4 80 0 222 37 0 0 chr13 76209765 76209792 -25663377 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1910 103 3 17 chr13 76209795 76210087 -25663082 - AluY SINE Alu 0 311 24 1929 194 68 12 chr13 76210343 76210770 -25662399 + MER39 LTR ERV1 257 707 0 22 35 0 0 chr13 76211303 76211332 -25661837 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr13 76212758 76212801 -25660368 + AT_rich Low_complexity Low_complexity 1 43 0 514 284 77 50 chr13 76212816 76213260 -25659909 + L1MC5 LINE L1 6990 7445 -516 879 303 111 20 chr13 76213268 76214171 -25658998 + L1M2 LINE L1 1448 2289 -4107 1641 230 53 65 chr13 76214201 76214519 -25658650 + L1M2 LINE L1 2328 2648 -3567 2122 122 0 0 chr13 76214519 76214806 -25658363 + AluSx SINE Alu 1 287 -25 1641 230 53 65 chr13 76214806 76215038 -25658131 + L1M2 LINE L1 2648 2869 -3346 2150 136 0 0 chr13 76215038 76215348 -25657821 + AluSx SINE Alu 3 312 0 1641 230 53 65 chr13 76215348 76215586 -25657583 + L1M2 LINE L1 2869 3108 -3107 7338 38 5 0 chr13 76215593 76216817 -25656352 + L1PA5 LINE L1 4927 6154 0 1644 286 92 48 chr13 76216854 76217129 -25656040 + L1ME2 LINE L1 3861 4122 -2024 198 0 0 0 chr13 76217129 76217151 -25656018 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1644 286 92 48 chr13 76217151 76218218 -25654951 + L1ME2 LINE L1 4122 5262 -884 23 0 0 0 chr13 76218248 76218271 -25654898 + AT_rich Low_complexity Low_complexity 1 23 0 2042 117 0 64 chr13 76218316 76218642 -25654527 + AluSg SINE Alu 3 307 -3 387 73 0 0 chr13 76218642 76218697 -25654472 + (TA)n Simple_repeat Simple_repeat 1 55 0 183 133 33 17 chr13 76218764 76218824 -25654345 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 28 71 0 0 chr13 76218852 76218908 -25654261 + AT_rich Low_complexity Low_complexity 1 56 0 393 253 0 0 chr13 76218910 76218989 -25654180 + MER70A LTR ERVL 217 295 -177 215 181 43 75 chr13 76218993 76219087 -25654082 + (TTATA)n Simple_repeat Simple_repeat 5 95 0 1615 254 68 36 chr13 76219122 76219477 -25653692 + L1ME2 LINE L1 5470 5812 -352 1664 177 7 13 chr13 76219477 76219776 -25653393 + AluJo SINE Alu 1 297 -15 1615 254 68 36 chr13 76219776 76220086 -25653083 + L1ME2 LINE L1 5812 6156 -8 267 276 94 10 chr13 76220086 76220278 -25652891 + L1MC5 LINE L1 7475 7682 -279 1975 216 34 100 chr13 76220280 76220869 -25652300 + MER70B LTR ERVL 3 552 -26 207 100 0 0 chr13 76221368 76221398 -25651771 + (A)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr13 76223812 76223844 -25649325 + AT_rich Low_complexity Low_complexity 1 32 0 2144 125 0 19 chr13 76223872 76224185 -25648984 + AluSx SINE Alu 6 312 0 1955 139 7 0 chr13 76224611 76224899 -25648270 - AluSx SINE Alu -22 290 1 1267 125 25 20 chr13 76226141 76226341 -25646828 - AluSg/x SINE Alu -24 288 88 28 0 0 0 chr13 76227736 76227764 -25645405 + AT_rich Low_complexity Low_complexity 1 28 0 857 105 0 9 chr13 76227764 76227878 -25645291 - AluSq/x SINE Alu -193 120 8 22 35 0 0 chr13 76228099 76228128 -25645041 + AT_rich Low_complexity Low_complexity 1 29 0 33 25 0 0 chr13 76228789 76228829 -25644340 + AT_rich Low_complexity Low_complexity 1 40 0 2041 99 0 18 chr13 76228891 76229200 -25643969 + AluSc SINE Alu 1 304 0 213 39 0 0 chr13 76229490 76229516 -25643653 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1852 117 4 8 chr13 76229518 76229783 -25643386 - AluSg SINE Alu -44 266 3 918 319 112 37 chr13 76231252 76231848 -25641321 + L2 LINE L2 271 911 -2403 319 227 136 60 chr13 76231999 76232250 -25640919 - HAL1 LINE L1 -185 2322 2053 2170 125 0 3 chr13 76232251 76232562 -25640607 - AluSg SINE Alu 0 310 1 320 306 22 49 chr13 76232594 76232777 -25640392 + MLT1J LTR MaLR 117 294 -217 356 220 47 157 chr13 76232807 76233043 -25640126 - HAL1 LINE L1 -1207 1300 1091 2023 115 14 0 chr13 76233289 76233585 -25639584 + AluSq SINE Alu 1 300 -13 25 95 0 0 chr13 76233836 76233910 -25639259 + AT_rich Low_complexity Low_complexity 1 74 0 951 277 99 22 chr13 76234575 76234979 -25638190 - L1MEc LINE L1 -5940 456 22 310 417 14 30 chr13 76235369 76235664 -25637505 - L2 LINE L2 -585 2729 2440 237 307 39 52 chr13 76235725 76235878 -25637291 + MIR SINE MIR 105 255 -7 1090 236 11 14 chr13 76236736 76237012 -25636157 + L1MB8 LINE L1 2508 2782 -3364 * 3222 213 32 58 chr13 76237008 76238493 -25634676 + L1MB8 LINE L1 4734 6175 -3 225 102 102 16 chr13 76239015 76239143 -25634026 + (TA)n Simple_repeat Simple_repeat 1 139 0 24 32 0 0 chr13 76241022 76241053 -25632116 + AT_rich Low_complexity Low_complexity 1 31 0 2131 125 0 0 chr13 76241866 76242161 -25631008 + AluSx SINE Alu 1 295 -17 39 0 0 0 chr13 76242161 76242200 -25630969 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr13 76242269 76242311 -25630858 + AT_rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chr13 76242649 76242683 -25630486 + (TC)n Simple_repeat Simple_repeat 1 34 0 300 91 0 0 chr13 76242682 76242726 -25630443 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 22 80 0 0 chr13 76243264 76243314 -25629855 + AT_rich Low_complexity Low_complexity 1 50 0 285 295 67 47 chr13 76244478 76244671 -25628498 - LTR33 LTR ERVL -67 454 258 23 33 0 0 chr13 76244963 76244993 -25628176 + AT_rich Low_complexity Low_complexity 1 30 0 2073 122 17 0 chr13 76245013 76245308 -25627861 + AluSx SINE Alu 1 300 -12 5485 165 34 11 chr13 76245311 76245473 -25627696 - L1MA4 LINE L1 -22 7697 7540 1931 108 0 32 chr13 76245473 76245752 -25627417 + AluSc SINE Alu 1 270 -39 1383 46 0 0 chr13 76245752 76245927 -25627242 + (GGAA)n Simple_repeat Simple_repeat 2 176 0 5485 165 34 11 chr13 76245927 76247627 -25625542 - L1MA4 LINE L1 -178 7541 5791 668 193 29 86 chr13 76247643 76247709 -25625460 - L1MA4 LINE L1 -4352 3213 3145 2224 122 0 3 chr13 76247709 76248020 -25625149 - AluSg SINE Alu 0 310 1 668 193 29 86 chr13 76248020 76248196 -25624973 - L1MA4 LINE L1 -4420 3145 2985 4067 252 44 26 chr13 76248204 76249993 -25623176 - L1MA4 LINE L1 -5052 2513 14 22 0 0 0 chr13 76250268 76250290 -25622879 + AT_rich Low_complexity Low_complexity 1 22 0 318 317 85 60 chr13 76251962 76252281 -25620888 - L2 LINE L2 -1300 2014 1688 523 319 47 21 chr13 76253023 76253258 -25619911 + MIR SINE MIR 22 262 0 21 71 0 0 chr13 76255437 76255479 -25617690 + AT_rich Low_complexity Low_complexity 1 42 0 184 370 12 12 chr13 76255482 76255563 -25617606 - L2 LINE L2 -44 3228 3148 1197 197 111 9 chr13 76255565 76255915 -25617254 + LTR37A LTR ERV1 1 386 -40 2690 143 19 0 chr13 76256303 76256723 -25616446 - MSTA LTR MaLR 0 428 1 8856 186 24 6 chr13 76256728 76258345 -25614824 - MSTA-int LTR MaLR -5 1646 1 1078 157 5 59 chr13 76258345 76258415 -25614754 - MSTA LTR MaLR 0 428 356 2204 119 0 10 chr13 76258415 76258726 -25614443 + AluSc SINE Alu 1 308 -1 1078 157 5 59 chr13 76258726 76258859 -25614310 - MSTA LTR MaLR -72 356 236 291 157 0 0 chr13 76258862 76258913 -25614256 + (TA)n Simple_repeat Simple_repeat 2 52 0 2772 7 0 0 chr13 76259040 76259339 -25613830 - AluYa5 SINE Alu -12 299 1 24 32 0 0 chr13 76259563 76259594 -25613575 + AT_rich Low_complexity Low_complexity 1 31 0 454 199 0 135 chr13 76260495 76260636 -25612533 + MER92B LTR ERV1 5 126 -510 260 186 68 0 chr13 76260753 76260812 -25612357 + MER92C LTR ERV1 492 554 0 21 89 0 0 chr13 76262265 76262321 -25610848 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr13 76263310 76263346 -25609823 + AT_rich Low_complexity Low_complexity 1 36 0 2824 179 59 32 chr13 76263908 76264629 -25608540 - LTR1 LTR ERV1 0 785 12 1369 183 15 11 chr13 76265570 76265832 -25607337 + AluJo SINE Alu 32 294 -18 1973 134 0 3 chr13 76265835 76266150 -25607019 + AluY SINE Alu 1 311 0 2183 115 0 3 chr13 76267352 76267656 -25605513 + AluSc SINE Alu 1 303 -6 1984 174 15 0 chr13 76268217 76268556 -25604613 + MER7A DNA MER2_type 4 345 -1 2399 216 23 16 chr13 76268571 76268821 -25604348 - MER89 LTR ERV1 -25 534 287 2236 160 6 3 chr13 76268821 76269184 -25603985 - THE1B LTR MaLR 0 364 1 2399 216 23 16 chr13 76269184 76269448 -25603721 - MER89 LTR ERV1 -272 287 16 2188 120 0 0 chr13 76269484 76269788 -25603381 + AluSx SINE Alu 1 304 0 248 266 101 50 chr13 76269793 76269909 -25603260 + L1ME3A LINE L1 3741 3850 -2296 2213 183 33 22 chr13 76269909 76270363 -25602806 - LOR1b LTR ERV1 -2 459 1 248 266 101 50 chr13 76270363 76270464 -25602705 + L1ME3A LINE L1 3850 3969 -2177 494 198 22 0 chr13 76270471 76270562 -25602607 - MLT1E3 LTR MaLR -531 93 1 1095 264 45 43 chr13 76270593 76271238 -25601931 + L1ME3A LINE L1 4037 4682 -1464 788 303 86 58 chr13 76271285 76271808 -25601361 + L1ME3A LINE L1 5353 5907 -263 243 0 0 0 chr13 76271808 76271835 -25601334 + (CA)n Simple_repeat Simple_repeat 1 27 0 788 303 86 58 chr13 76271835 76272089 -25601080 + L1ME3A LINE L1 5907 6152 -18 188 304 54 54 chr13 76272924 76273016 -25600153 - MIR SINE MIR -168 94 3 21 36 0 0 chr13 76273030 76273058 -25600111 + AT_rich Low_complexity Low_complexity 1 28 0 515 194 9 0 chr13 76273080 76273188 -25599981 - L1PB4 LINE L1 0 6156 6048 26 64 0 0 chr13 76273512 76273559 -25599610 + AT_rich Low_complexity Low_complexity 1 47 0 180 287 166 25 chr13 76274246 76274309 -25598860 + MIR SINE MIR 84 137 -125 2101 116 3 52 chr13 76274309 76274636 -25598533 - AluSq SINE Alu -2 311 1 180 287 166 25 chr13 76274636 76274729 -25598440 + MIR SINE MIR 137 262 0 228 275 14 0 chr13 76274746 76274842 -25598327 + (TA)n Simple_repeat Simple_repeat 1 97 0 2189 112 3 3 chr13 76275092 76275386 -25597783 - AluSg SINE Alu -12 298 5 622 290 23 18 chr13 76276321 76276538 -25596631 + MER20 DNA MER1_type 1 218 -1 293 298 48 10 chr13 76279942 76280046 -25593123 - L1ME LINE L1 -5926 144 37 2217 82 7 3 chr13 76280341 76280632 -25592537 - AluSq SINE Alu -21 292 1 1699 146 41 34 chr13 76280664 76280958 -25592211 - AluSx SINE Alu -14 298 3 2370 47 43 3 chr13 76281050 76281349 -25591820 - AluY SINE Alu 0 311 1 230 241 0 24 chr13 76282279 76282362 -25590807 + (TATG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr13 76282970 76282991 -25590178 + AT_rich Low_complexity Low_complexity 1 21 0 496 358 7 18 chr13 76283983 76284265 -25588904 + BaEV-int LTR ERV1 725 1003 -6782 245 352 12 12 chr13 76284265 76284427 -25588742 + GA-rich Low_complexity Low_complexity 2 163 0 255 314 12 0 chr13 76284629 76284715 -25588454 + L3 LINE CR1 1459 1545 -32 2052 85 11 0 chr13 76284727 76284987 -25588182 + AluSc SINE Alu 3 265 -44 672 289 71 55 chr13 76285108 76285347 -25587822 + BaEV-int LTR ERV1 1623 1857 -5419 4748 55 7 0 chr13 76285347 76285934 -25587235 - LTR10C LTR ERV1 0 591 1 672 289 71 55 chr13 76285934 76286358 -25586811 + BaEV-int LTR ERV1 1857 2718 -4558 1998 123 12 19 chr13 76286625 76286950 -25586219 - LTR19C LTR ERV1 -359 420 98 655 336 8 18 chr13 76286994 76287438 -25585731 + BaEV-int LTR ERV1 4119 4609 -2040 2082 132 0 0 chr13 76287707 76288002 -25585167 + AluY SINE Alu 3 297 -14 1577 330 36 45 chr13 76288453 76289694 -25583475 + BaEV-int LTR ERV1 5282 6511 -138 24 53 0 0 chr13 76291486 76291524 -25581645 + AT_rich Low_complexity Low_complexity 1 38 0 1914 149 0 17 chr13 76292950 76293245 -25579924 + AluSx SINE Alu 4 293 -19 257 179 39 13 chr13 76293694 76293772 -25579397 + (TA)n Simple_repeat Simple_repeat 1 80 0 29 28 0 0 chr13 76295162 76295198 -25577971 + AT_rich Low_complexity Low_complexity 1 36 0 703 142 214 23 chr13 76295737 76295933 -25577236 - L1MA9 LINE L1 -5 6307 6069 239 111 0 37 chr13 76296191 76296245 -25576924 + (TTA)n Simple_repeat Simple_repeat 1 52 0 593 191 7 59 chr13 76296421 76296557 -25576612 - FLAM_A SINE Alu -4 129 1 305 295 16 49 chr13 76297282 76297404 -25575765 + HAL1b LINE L1 733 850 -498 5535 69 77 0 chr13 76299040 76299809 -25573360 - L1PA8 LINE L1 -1 6171 5344 1498 259 73 63 chr13 76299833 76300451 -25572718 + MLT1E2 LTR MaLR 1 624 -2 286 333 76 21 chr13 76300577 76300721 -25572448 - MIR SINE MIR -108 154 3 1772 168 26 45 chr13 76301241 76301623 -25571546 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr13 76301856 76301877 -25571292 + AT_rich Low_complexity Low_complexity 1 21 0 280 332 121 58 chr13 76302057 76302212 -25570957 - L2 LINE L2 -429 2885 2741 2035 134 0 0 chr13 76302212 76302502 -25570667 - AluSx SINE Alu -9 303 14 280 332 121 58 chr13 76302502 76302792 -25570377 - L2 LINE L2 -573 2741 2412 1183 285 140 58 chr13 76302930 76303119 -25570050 + MLT1E3 LTR MaLR 1 173 -451 1374 185 58 52 chr13 76303119 76303481 -25569688 + THE1B LTR MaLR 1 364 0 1183 285 140 58 chr13 76303481 76303891 -25569278 + MLT1E3 LTR MaLR 173 619 -5 904 279 56 24 chr13 76303898 76304363 -25568806 + MLT1E1-int LTR MaLR 3 605 -766 468 337 25 99 chr13 76304566 76304999 -25568170 + MLT1E1-int LTR MaLR 692 1092 -279 288 143 0 0 chr13 76305000 76305056 -25568113 + (T)n Simple_repeat Simple_repeat 1 56 0 288 70 0 0 chr13 76305063 76305106 -25568063 - L1PA6 LINE L1 -2 6152 6110 2115 90 0 4 chr13 76305106 76305383 -25567786 - AluSq SINE Alu -37 276 1 549 286 36 76 chr13 76305422 76305698 -25567471 + MLT1E1-int LTR MaLR 1107 1371 0 1600 205 62 117 chr13 76305698 76305731 -25567438 + MLT1E1 LTR MaLR 1 34 -620 1453 191 112 6 chr13 76305731 76305868 -25567301 + MLT1A1 LTR MaLR 1 122 -243 2155 105 0 0 chr13 76305868 76306145 -25567024 + AluSc SINE Alu 28 304 -5 1453 191 112 6 chr13 76306145 76306337 -25566832 + MLT1A1 LTR MaLR 122 365 0 1600 205 62 117 chr13 76306337 76306995 -25566174 + MLT1E1 LTR MaLR 34 654 0 2197 121 0 0 chr13 76307146 76307443 -25565726 - AluSx SINE Alu -15 297 1 927 244 251 43 chr13 76308311 76308960 -25564209 - LTR50 LTR ERVL 0 795 12 238 343 49 20 chr13 76309252 76309354 -25563815 - L2 LINE L2 -4 3268 3164 361 288 0 0 chr13 76309445 76309556 -25563613 + (TA)n Simple_repeat Simple_repeat 2 112 0 237 222 0 0 chr13 76309899 76309962 -25563207 + (CATA)n Simple_repeat Simple_repeat 4 66 0 1659 198 16 9 chr13 76309962 76310285 -25562884 + MER2 DNA MER2_type 20 344 -1 938 31 12 59 chr13 76310285 76310611 -25562558 + (CA)n Simple_repeat Simple_repeat 1 310 0 180 0 0 0 chr13 76310838 76310858 -25562311 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1403 279 123 23 chr13 76311138 76311666 -25561503 + MER77 LTR ERV1 41 671 -24 1646 144 72 4 chr13 76312381 76312658 -25560511 + AluSx SINE Alu 1 296 -16 1315 130 40 14 chr13 76314737 76314960 -25558209 - MER30 DNA MER1_type 0 230 2 3804 213 65 14 chr13 76316149 76317147 -25556022 + L1MC3 LINE L1 6712 7760 -25 1029 303 46 7 chr13 76318233 76318666 -25554503 - LTR16B LTR ERVL -7 457 8 21 36 0 0 chr13 76320855 76320883 -25552286 + AT_rich Low_complexity Low_complexity 1 28 0 6657 17 0 0 chr13 76321128 76321889 -25551280 - L1PA2 LINE L1 0 6155 5395 426 338 77 5 chr13 76323251 76323458 -25549711 + MIR SINE MIR 13 234 -28 2612 40 3 0 chr13 76324922 76325226 -25547943 + AluY SINE Alu 2 306 -5 21 0 0 0 chr13 76325532 76325553 -25547616 + AT_rich Low_complexity Low_complexity 1 21 0 252 339 73 6 chr13 76326144 76326309 -25546860 - Tigger8 DNA MER2_type -170 496 321 465 323 111 0 chr13 76326340 76326575 -25546594 - Tigger8 DNA MER2_type -398 268 8 241 263 35 0 chr13 76327642 76327699 -25545470 - MER5A DNA MER1_type -113 76 18 184 275 0 0 chr13 76327796 76327836 -25545333 + MER5A DNA MER1_type 136 175 -14 212 59 29 0 chr13 76327965 76327999 -25545170 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 432 327 130 7 chr13 76329647 76329947 -25543222 - HAL1 LINE L1 -905 1602 1266 240 265 24 36 chr13 76330056 76330139 -25543030 + MIR SINE MIR 7 88 -174 2097 88 9 53 chr13 76330282 76330602 -25542567 - AluSc SINE Alu -3 306 1 33 0 0 0 chr13 76330700 76330733 -25542436 + AT_rich Low_complexity Low_complexity 1 33 0 1284 219 7 31 chr13 76330766 76331054 -25542115 + AluJo SINE Alu 2 282 -30 215 232 0 0 chr13 76331861 76331917 -25541252 + A-rich Low_complexity Low_complexity 4 59 0 262 292 0 0 chr13 76332204 76332269 -25540900 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1629 248 24 31 chr13 76332411 76332835 -25540334 + L1MA4 LINE L1 2 422 -5719 3163 267 84 30 chr13 76332836 76335006 -25538163 + L1MA4 LINE L1 472 2437 -3773 24 67 0 0 chr13 76335097 76335142 -25538027 + AT_rich Low_complexity Low_complexity 1 45 0 5153 202 45 15 chr13 76335276 76336956 -25536213 + L1MA4 LINE L1 4117 5844 -520 1433 153 21 12 chr13 76336958 76337200 -25535969 - MSTA LTR MaLR 0 428 185 3480 72 2 7 chr13 76337201 76337662 -25535507 - L1PA7 LINE L1 0 6154 5696 2594 105 18 0 chr13 76337662 76338044 -25535125 - L1P LINE L1 -3274 2872 2484 986 150 11 33 chr13 76338044 76338224 -25534945 - MSTA LTR MaLR -248 180 5 2132 196 36 6 chr13 76338226 76338730 -25534439 + L1MA4 LINE L1 5842 6360 -4 4275 169 17 4 chr13 76338730 76339540 -25533629 + L1MA5 LINE L1 5461 6285 -15 210 192 27 14 chr13 76339567 76339640 -25533529 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 0 0 0 chr13 76339661 76339683 -25533486 + AT_rich Low_complexity Low_complexity 1 22 0 1953 142 6 38 chr13 76339897 76340214 -25532955 + AluSg SINE Alu 1 307 -3 354 80 0 0 chr13 76340566 76340616 -25532553 + (TA)n Simple_repeat Simple_repeat 2 51 0 252 335 35 18 chr13 76341051 76341278 -25531891 + L1MC/D LINE L1 5669 5899 -1909 2196 110 7 0 chr13 76343538 76343847 -25529322 + AluSq SINE Alu 1 311 -2 21 0 0 0 chr13 76343899 76343920 -25529249 + AT_rich Low_complexity Low_complexity 1 21 0 2253 90 0 13 chr13 76343976 76344276 -25528893 - AluSc SINE Alu -13 296 1 3639 117 86 73 chr13 76344412 76345772 -25527397 + pTR5 LTR ERV1 66 2438 0 1886 103 4 23 chr13 76346113 76346375 -25526794 + AluSq SINE Alu 39 295 -18 743 256 56 21 chr13 76346512 76346746 -25526423 - MIR SINE MIR -10 252 11 190 296 138 92 chr13 76346933 76347173 -25525996 - L2 LINE L2 -650 2664 2414 8580 213 61 44 chr13 76348542 76349696 -25523473 + L1MC1 LINE L1 18 1151 -5462 2161 118 3 7 chr13 76349696 76350002 -25523167 + AluSc SINE Alu 1 305 -4 8580 213 61 44 chr13 76350002 76350212 -25522957 + L1MC1 LINE L1 1151 1356 -5257 1985 113 0 35 chr13 76350212 76350522 -25522647 + AluSg SINE Alu 1 299 -11 8580 213 61 44 chr13 76350522 76351629 -25521540 + L1MC1 LINE L1 1356 2442 -4171 1476 220 10 23 chr13 76351629 76351938 -25521231 + AluJo SINE Alu 1 305 -7 8580 213 61 44 chr13 76351938 76352739 -25520430 + L1MC1 LINE L1 2442 3228 -3385 1950 143 0 0 chr13 76352739 76353018 -25520151 + AluSx SINE Alu 12 290 -22 8580 213 61 44 chr13 76353018 76354309 -25518860 + L1MC1 LINE L1 3228 4495 -2118 6110 151 47 16 chr13 76354309 76355058 -25518111 + Tigger3b DNA MER2_type 2 726 -2302 381 43 0 0 chr13 76355058 76355105 -25518064 + (TA)n Simple_repeat Simple_repeat 1 47 0 1996 143 0 13 chr13 76355105 76355405 -25517764 - AluY SINE Alu -15 296 1 6110 151 47 16 chr13 76355405 76355847 -25517322 + Tigger3b DNA MER2_type 725 1231 0 8580 213 61 44 chr13 76355847 76356790 -25516379 + L1MC1 LINE L1 4495 5420 -1193 1860 151 57 29 chr13 76356790 76357140 -25516029 + THE1B LTR MaLR 1 360 -4 8580 213 61 44 chr13 76357140 76358134 -25515035 + L1MC1 LINE L1 5420 6613 0 45 19 0 0 chr13 76358211 76358263 -25514906 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr13 76358494 76358515 -25514654 + AT_rich Low_complexity Low_complexity 1 21 0 429 249 55 89 chr13 76358691 76359108 -25514061 - MER57A LTR ERV1 0 403 1 263 235 29 0 chr13 76359737 76359805 -25513364 + T-rich Low_complexity Low_complexity 4 73 0 203 246 27 40 chr13 76360183 76360290 -25512879 - MIR SINE MIR -98 164 62 2157 96 3 40 chr13 76360336 76360660 -25512509 + AluSx SINE Alu 1 312 0 23 0 0 0 chr13 76360831 76360854 -25512315 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 76361068 76361094 -25512075 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr13 76362418 76362459 -25510710 + AT_rich Low_complexity Low_complexity 1 41 0 204 163 23 0 chr13 76362465 76362508 -25510661 + (TATAA)n Simple_repeat Simple_repeat 1 44 0 192 184 26 0 chr13 76362533 76362571 -25510598 - MER5A DNA MER1_type -92 97 59 25 0 0 0 chr13 76362690 76362715 -25510454 + AT_rich Low_complexity Low_complexity 1 25 0 184 232 12 12 chr13 76363403 76363427 -25509742 + GA-rich Low_complexity Low_complexity 3 26 -58 1910 199 76 9 chr13 76363427 76363859 -25509310 + LOR1b LTR ERV1 1 461 0 184 232 12 12 chr13 76363859 76363916 -25509253 + GA-rich Low_complexity Low_complexity 25 84 0 2106 111 0 7 chr13 76364071 76364369 -25508800 - AluSg SINE Alu -14 296 1 2219 112 7 0 chr13 76365290 76365595 -25507574 - AluSg SINE Alu -3 307 1 2961 159 47 12 chr13 76365902 76366026 -25507143 - MER1A DNA MER1_type -2173 527 409 201 74 0 0 chr13 76366026 76366053 -25507116 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2961 159 47 12 chr13 76366053 76366437 -25506732 - MER1A DNA MER1_type -2291 409 1 1823 178 3 20 chr13 76367154 76367496 -25505673 - MER1B DNA MER1_type -1 336 1 342 263 73 80 chr13 76368023 76368088 -25505081 - MER58A DNA MER1_type -2248 172 108 1932 111 10 20 chr13 76368088 76368386 -25504783 + AluSg SINE Alu 1 295 -15 189 0 0 0 chr13 76368386 76368407 -25504762 + (TA)n Simple_repeat Simple_repeat 2 22 0 342 263 73 80 chr13 76368407 76368477 -25504692 - MER58A DNA MER1_type -2310 110 37 2218 181 28 23 chr13 76369058 76369490 -25503679 - Tigger2a DNA MER2_type 0 434 1 4349 38 2 2 chr13 76371278 76371811 -25501358 + L1PA4 LINE L1 5620 6152 -3 393 167 0 0 chr13 76372323 76372395 -25500774 + MLT1D LTR MaLR 429 500 -5 667 161 0 70 chr13 76372807 76372950 -25500219 + L1MA6 LINE L1 6109 6241 -59 30 0 0 0 chr13 76372953 76372983 -25500186 + AT_rich Low_complexity Low_complexity 1 30 0 1562 204 38 39 chr13 76373091 76373479 -25499690 - MLT1B LTR MaLR -4 386 1 297 219 37 12 chr13 76373717 76373799 -25499370 + GA-rich Low_complexity Low_complexity 4 87 0 1397 273 42 28 chr13 76374448 76374920 -25498249 + MLT1E2 LTR MaLR 1 479 -147 1003 173 207 13 chr13 76374925 76375225 -25497944 - L1MA7 LINE L1 -6 6285 5928 * 1644 160 57 0 chr13 76375221 76375503 -25497666 + L1MA7 LINE L1 5622 5919 -372 2400 91 3 0 chr13 76375561 76375869 -25497300 - AluSc SINE Alu 0 309 1 250 203 116 14 chr13 76375869 76375938 -25497231 + MLT1E2 LTR MaLR 430 505 0 27 29 0 0 chr13 76377079 76377113 -25496056 + AT_rich Low_complexity Low_complexity 1 34 0 2025 132 3 0 chr13 76377283 76377571 -25495598 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr13 76377573 76377599 -25495570 + AT_rich Low_complexity Low_complexity 1 26 0 268 338 14 7 chr13 76378450 76378589 -25494580 - L1M4 LINE L1 -1038 5108 4969 21 82 0 0 chr13 76379582 76379631 -25493538 + AT_rich Low_complexity Low_complexity 1 49 0 1201 261 106 33 chr13 76379683 76380181 -25492988 - MLT1F1 LTR MaLR 0 567 32 234 0 0 0 chr13 76380999 76381025 -25492144 + (CA)n Simple_repeat Simple_repeat 2 27 0 260 348 96 37 chr13 76382427 76383290 -25489879 + L1MEc LINE L1 70 983 -5413 5123 195 46 26 chr13 76383367 76383564 -25489605 + L1MC1 LINE L1 4747 4939 -1394 180 0 0 0 chr13 76383564 76383584 -25489585 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 5123 195 46 26 chr13 76383584 76383759 -25489410 + L1MC1 LINE L1 4939 5109 -1224 1662 183 3 37 chr13 76383759 76384081 -25489088 + AluJb SINE Alu 1 311 -1 5123 195 46 26 chr13 76384081 76384267 -25488902 + L1MC1 LINE L1 5109 5290 -1043 2255 128 28 14 chr13 76384267 76384626 -25488543 + THE1B LTR MaLR 1 364 0 10613 117 15 1 chr13 76384626 76386184 -25486985 + THE1B-int LTR MaLR 1 1580 0 2042 147 39 14 chr13 76386184 76386539 -25486630 + THE1B LTR MaLR 1 364 0 5123 195 46 26 chr13 76386539 76387529 -25485640 + L1MC1 LINE L1 5289 6333 0 451 324 42 17 chr13 76387533 76387771 -25485398 + L1MEc LINE L1 981 1224 -4981 293 47 23 0 chr13 76388038 76388081 -25485088 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 450 300 71 33 chr13 76388283 76388658 -25484511 + L1MEc LINE L1 2038 2387 -3828 1169 262 79 32 chr13 76388666 76389452 -25483717 + L1MEc LINE L1 2747 3569 -2646 628 296 95 23 chr13 76389489 76390016 -25483153 + L1MEc LINE L1 3637 4201 -2014 2007 141 0 0 chr13 76390055 76390354 -25482815 + AluSg SINE Alu 1 299 -11 623 97 21 0 chr13 76390367 76390460 -25482709 + MER51B-int LTR ERV1 4910 5004 -2533 * 8328 140 68 39 chr13 76390459 76392732 -25480437 + MER51B-int LTR ERV1 5249 7816 0 2580 87 53 0 chr13 76392733 76393090 -25480079 + MER51B LTR ERV1 1 376 -1 1628 208 47 61 chr13 76394540 76394729 -25478440 + L1 LINE L1 4848 5038 -1108 2276 86 0 7 chr13 76394729 76395032 -25478137 + AluY SINE Alu 1 301 -10 1628 208 47 61 chr13 76395032 76395352 -25477817 + L1 LINE L1 5038 5350 -796 295 212 0 0 chr13 76395426 76395489 -25477680 + L1M LINE L1 5351 5413 -755 2870 163 45 16 chr13 76395489 76396006 -25477163 + LTR39 LTR ERV1 3 534 -249 3507 300 73 35 chr13 76396029 76398076 -25475093 - L1M2 LINE L1 -4244 2107 2 212 303 87 56 chr13 76398647 76398842 -25474327 - L2 LINE L2 -1 3312 3112 3487 224 102 93 chr13 76399417 76400299 -25472870 + MER52A LTR ERV1 1 1754 -1 4117 211 25 28 chr13 76400299 76401154 -25472015 + MER52A LTR ERV1 903 1754 -1 776 262 77 63 chr13 76401261 76401612 -25471557 - LTR52 LTR ERVL -41 380 25 395 314 78 29 chr13 76403162 76403198 -25469971 + MIR SINE MIR 46 79 -183 1828 158 127 16 chr13 76403198 76403583 -25469586 - MSTA LTR MaLR 0 428 1 395 314 78 29 chr13 76403583 76403750 -25469419 + MIR SINE MIR 79 259 -3 4976 138 19 0 chr13 76403809 76404632 -25468537 - L1MA2 LINE L1 -2 6302 5464 245 338 30 30 chr13 76406405 76406538 -25466631 + LTR16C LTR ERVL 359 491 0 665 257 64 26 chr13 76406747 76407164 -25466005 + L1ME3A LINE L1 22 477 -5919 * 1835 263 43 28 chr13 76407157 76407539 -25465630 + L1ME3A LINE L1 4210 4585 -1630 2141 120 0 0 chr13 76407539 76407838 -25465331 + AluSq SINE Alu 1 299 -14 1835 263 43 28 chr13 76407838 76408249 -25464920 + L1ME3A LINE L1 4585 5015 -1200 25 31 0 0 chr13 76408349 76408381 -25464788 + AT_rich Low_complexity Low_complexity 1 32 0 2083 137 7 59 chr13 76458549 76458958 -25414211 - L1PA12 LINE L1 -204 5964 5577 279 0 0 0 chr13 76460202 76460233 -25412936 + (A)n Simple_repeat Simple_repeat 1 31 0 6898 72 0 0 chr13 76461289 76462374 -25410795 + L1PA6 LINE L1 5064 6148 -6 2193 55 0 81 chr13 76462376 76462726 -25410443 + AluY SINE Alu 1 325 0 21 36 0 0 chr13 76462839 76462867 -25410302 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr13 76463204 76463238 -25409931 + AT_rich Low_complexity Low_complexity 1 34 0 1580 218 34 43 chr13 76463304 76463750 -25409419 - L1MA7 LINE L1 -58 6233 5792 1513 150 11 4 chr13 76463741 76464001 -25409168 + L1MA7 LINE L1 5532 5793 -498 * 395 360 81 15 chr13 76464486 76464967 -25408202 + L1ME3A LINE L1 5497 6009 -230 21 82 0 0 chr13 76465372 76465421 -25407748 + AT_rich Low_complexity Low_complexity 1 49 0 3130 158 30 10 chr13 76465512 76466089 -25407080 - L1MC1 LINE L1 -11 6322 5735 298 320 47 40 chr13 76466150 76466300 -25406869 - MLT1G1 LTR MaLR -199 396 246 479 311 32 11 chr13 76467197 76467478 -25405691 - MLT1G1 LTR MaLR -261 334 1 240 355 0 0 chr13 76468710 76468786 -25404383 + L2 LINE L2 3223 3298 -15 309 245 10 10 chr13 76469708 76469806 -25403363 + MER58 DNA MER1_type 2318 2415 -5 247 274 0 27 chr13 76470093 76470166 -25403003 - MIR SINE MIR -118 144 74 25 83 0 0 chr13 76470822 76470882 -25402287 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 76471687 76471708 -25401461 + AT_rich Low_complexity Low_complexity 1 21 0 1921 148 0 0 chr13 76472518 76472846 -25400323 - AluSx SINE Alu 0 328 1 301 263 114 18 chr13 76473231 76473345 -25399824 - MLT1K LTR MaLR -247 341 217 15628 89 4 4 chr13 76473608 76476593 -25396576 - L1PA7 LINE L1 -3 6151 3168 476 279 31 0 chr13 76476761 76476890 -25396279 + MER3 DNA MER1_type 11 143 -66 189 0 0 0 chr13 76476978 76476999 -25396170 + (TA)n Simple_repeat Simple_repeat 2 22 0 4905 36 0 0 chr13 76477000 76477579 -25395590 - L1PA5 LINE L1 -14 6140 5562 595 112 0 0 chr13 76477867 76477956 -25395213 - AluSq SINE Alu -12 301 213 1050 138 119 29 chr13 76479755 76479965 -25393204 - MER30 DNA MER1_type 0 230 2 1617 160 13 45 chr13 76479984 76480296 -25392873 + AluJo SINE Alu 1 302 -10 23 33 0 0 chr13 76480618 76480648 -25392521 + AT_rich Low_complexity Low_complexity 1 30 0 1382 226 159 33 chr13 76480681 76481141 -25392028 + MLT1E1 LTR MaLR 137 654 0 44 0 0 0 chr13 76481163 76481207 -25391962 + AT_rich Low_complexity Low_complexity 1 44 0 249 330 67 57 chr13 76481276 76481485 -25391684 - MIR SINE MIR -50 212 2 1969 137 20 3 chr13 76484794 76485093 -25388076 - AluSp SINE Alu -9 304 1 1442 159 12 8 chr13 76485320 76485572 -25387597 - THE1C LTR MaLR -2 373 121 8028 120 53 36 chr13 76485675 76487002 -25386167 - THE1C-int LTR MaLR -231 1349 1 2352 143 0 26 chr13 76487002 76487387 -25385782 - THE1C LTR MaLR 0 375 1 309 267 43 43 chr13 76487434 76487550 -25385619 - MLT1L LTR MaLR -373 242 127 1181 154 0 6 chr13 76488214 76488396 -25384773 - AluSq SINE Alu -110 203 23 1361 142 37 8 chr13 76490747 76491015 -25382154 - L1MA5A LINE L1 -4 6293 6018 29 0 0 0 chr13 76491044 76491073 -25382096 + AT_rich Low_complexity Low_complexity 1 29 0 1475 240 145 38 chr13 76491113 76491617 -25381552 + MLT1F1 LTR MaLR 4 561 -6 2403 91 0 0 chr13 76491737 76492046 -25381123 + AluSc SINE Alu 1 309 0 1760 135 50 73 chr13 76492956 76493340 -25379829 + THE1C LTR MaLR 1 375 0 2252 99 7 0 chr13 76493403 76493696 -25379473 + AluSp SINE Alu 1 295 -18 206 339 0 0 chr13 76493783 76493842 -25379327 + MIR SINE MIR 18 76 -132 2641 175 6 16 chr13 76495938 76496435 -25376734 - L1MA7 LINE L1 -239 6052 5561 2424 261 39 28 chr13 76496539 76497565 -25375604 - L1M2 LINE L1 -4222 2129 1112 1363 226 7 26 chr13 76497565 76497870 -25375299 - AluJo SINE Alu -11 301 3 2424 261 39 28 chr13 76497870 76498013 -25375156 - L1M2 LINE L1 -5239 1112 972 2292 283 43 27 chr13 76498377 76499124 -25374045 - L1M2 LINE L1 -5521 760 2 5206 146 152 92 chr13 76499422 76501023 -25372146 + pTR5 LTR ERV1 741 2438 0 233 313 12 12 chr13 76501465 76501545 -25371624 + MIR SINE MIR 170 249 -13 23 54 0 0 chr13 76502895 76502932 -25370237 + AT_rich Low_complexity Low_complexity 1 37 0 260 120 20 0 chr13 76503287 76503337 -25369832 + CT-rich Low_complexity Low_complexity 1 51 0 234 0 0 0 chr13 76503363 76503389 -25369780 + (CA)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr13 76504175 76504202 -25368967 + AT_rich Low_complexity Low_complexity 1 27 0 505 139 58 0 chr13 76504288 76504374 -25368795 - Tigger5 DNA MER2_type 0 2323 2233 28 48 0 0 chr13 76504469 76504511 -25368658 + AT_rich Low_complexity Low_complexity 1 42 0 2195 113 0 0 chr13 76504850 76505151 -25368018 - AluSc SINE Alu -8 301 1 1015 259 27 61 chr13 76505367 76505742 -25367427 - MLT1E2 LTR MaLR -245 381 20 546 196 0 0 chr13 76506413 76506505 -25366664 - MER5A DNA MER1_type -1 188 97 2320 208 11 99 chr13 76507628 76508292 -25364877 + MER77 LTR ERV1 1 605 0 425 311 54 0 chr13 76508833 76508981 -25364188 - MER91B DNA MER1_type -1 189 34 27 53 5 0 chr13 76509493 76509587 -25363582 + AT_rich Low_complexity Low_complexity 1 55 0 712 111 0 8 chr13 76509715 76509832 -25363337 - L1PA13 LINE L1 -14 6149 6034 303 337 127 17 chr13 76510176 76510476 -25362693 - L1ME LINE L1 -573 5589 5257 327 185 141 0 chr13 76510688 76510780 -25362389 - L1MC3 LINE L1 -326 7459 7355 604 235 17 17 chr13 76510780 76510959 -25362210 + L1MC1 LINE L1 5131 5309 -837 537 190 52 17 chr13 76510966 76511082 -25362087 + FLAM_A SINE Alu 18 137 -5 4290 195 36 44 chr13 76511094 76512109 -25361060 + L1MC1 LINE L1 5293 6299 -34 1532 266 188 46 chr13 76512166 76512586 -25360583 + L1MEc LINE L1 2033 2392 -3823 2185 4 0 0 chr13 76512586 76512824 -25360345 + AluYb8 SINE Alu 71 308 -10 1532 266 188 46 chr13 76512824 76514117 -25359052 + L1MEc LINE L1 2392 3954 -2261 * 2821 245 64 30 chr13 76514112 76515685 -25357484 + L1MEc LINE L1 4227 5865 -370 27 0 0 0 chr13 76517344 76517371 -25355798 + AT_rich Low_complexity Low_complexity 1 27 0 190 282 155 10 chr13 76517590 76517693 -25355476 + MIR3 SINE MIR 90 207 -1 261 276 69 55 chr13 76517891 76518036 -25355133 - MIR SINE MIR 0 262 116 21 0 0 0 chr13 76519511 76519532 -25353637 + AT_rich Low_complexity Low_complexity 1 21 0 1567 73 5 23 chr13 76519596 76519814 -25353355 - AluSg/x SINE Alu -18 291 78 468 65 0 0 chr13 76519819 76519881 -25353288 + Alu SINE Alu 14 75 -243 23 78 0 0 chr13 76520100 76520151 -25353018 + AT_rich Low_complexity Low_complexity 1 51 0 23 68 0 0 chr13 76520250 76520294 -25352875 + AT_rich Low_complexity Low_complexity 1 44 0 217 343 41 0 chr13 76520327 76520400 -25352769 - MIR3 SINE MIR -48 160 85 186 133 0 0 chr13 76521292 76521322 -25351847 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 263 253 93 0 chr13 76522872 76522947 -25350222 - MLT1L LTR MaLR -533 82 1 3555 179 37 16 chr13 76523323 76524049 -25349120 + L1MC1 LINE L1 5460 6200 -133 12226 252 58 56 chr13 76524050 76529617 -25343552 + L1PA12 LINE L1 841 6473 -1111 225 97 0 0 chr13 76529617 76529648 -25343521 + U2 snRNA snRNA 5 35 -153 12226 252 58 56 chr13 76529648 76529840 -25343329 + L1PA12 LINE L1 6473 6663 -921 1001 196 24 4 chr13 76530817 76531067 -25342102 + L1MA4 LINE L1 6040 6294 -6 1154 211 0 0 chr13 76531532 76531750 -25341419 + L1MC1 LINE L1 6098 6315 -18 312 345 35 23 chr13 76532116 76532290 -25340879 + MLT1J LTR MaLR 224 399 -112 30 52 0 39 chr13 76532559 76532636 -25340533 + AT_rich Low_complexity Low_complexity 1 74 0 2001 145 0 0 chr13 76533226 76533522 -25339647 + AluSx SINE Alu 1 296 -16 7468 31 0 0 chr13 76533776 76535025 -25338144 - L1PA3 LINE L1 -3 6152 4900 284 329 99 48 chr13 76536407 76536659 -25336510 + L2 LINE L2 2953 3217 -96 25 0 0 0 chr13 76537236 76537261 -25335908 + AT_rich Low_complexity Low_complexity 1 25 0 2123 97 0 4 chr13 76538344 76538623 -25334546 - AluSq SINE Alu -24 289 12 327 352 62 16 chr13 76539981 76540174 -25332995 - MIR3 SINE MIR -1 207 6 189 0 0 0 chr13 76540328 76540349 -25332820 + (T)n Simple_repeat Simple_repeat 1 21 0 8474 239 25 22 chr13 76543319 76546121 -25327048 + L1PA15 LINE L1 1532 4346 -2451 7344 197 11 14 chr13 76546128 76547624 -25325545 + L1PA15 LINE L1 4467 5966 -850 2999 158 14 0 chr13 76547624 76548131 -25325038 + MER75 DNA T2_type 1 514 0 7344 197 11 14 chr13 76548131 76548974 -25324195 + L1PA15 LINE L1 5966 6810 -6 21 36 0 0 chr13 76548974 76549002 -25324167 + AT_rich Low_complexity Low_complexity 1 28 0 423 248 43 12 chr13 76549003 76549164 -25324005 - MER114 LTR ERV -373 275 110 47 97 0 0 chr13 76549400 76549545 -25323624 + AT_rich Low_complexity Low_complexity 1 145 0 27 73 0 0 chr13 76549566 76549621 -25323548 + AT_rich Low_complexity Low_complexity 1 55 0 291 173 19 0 chr13 76549630 76549682 -25323487 - MER94 DNA DNA -81 53 1 356 304 89 9 chr13 76549941 76550053 -25323116 - LTR28 LTR ERV1 0 1020 900 1489 242 75 105 chr13 76550095 76550901 -25322268 - LTR1B LTR ERV1 -39 981 2 565 327 106 6 chr13 76550904 76551253 -25321916 - MLT1J2 LTR MaLR 0 450 67 2067 151 28 11 chr13 76551266 76551624 -25321545 - THE1B LTR MaLR 0 364 1 9622 121 37 40 chr13 76551630 76553195 -25319974 - THE1B-int LTR MaLR -7 1573 13 1952 167 25 17 chr13 76553203 76553557 -25319612 - THE1B LTR MaLR -7 357 1 1978 149 0 0 chr13 76554742 76555050 -25318119 + AluSc SINE Alu 1 308 -1 1726 164 29 10 chr13 76555060 76555371 -25317798 + MER7A DNA MER2_type 32 346 0 26 0 0 0 chr13 76557229 76557255 -25315914 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr13 76557432 76557459 -25315710 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr13 76560061 76560091 -25313078 + AT_rich Low_complexity Low_complexity 1 30 0 1652 154 38 8 chr13 76560918 76561184 -25311985 + AluJo SINE Alu 1 274 -38 1995 148 116 11 chr13 76561234 76561612 -25311557 - MSTA LTR MaLR -1 427 10 346 288 78 26 chr13 76561729 76562035 -25311134 - L1ME4a LINE L1 -74 6047 5726 238 243 95 14 chr13 76563023 76563097 -25310072 + MLT1A2 LTR MaLR 1 80 -294 * 772 183 6 49 chr13 76563094 76563258 -25309911 + MLT1A2 LTR MaLR 218 374 0 243 310 40 0 chr13 76564428 76564528 -25308641 - MIR SINE MIR -112 150 47 1517 141 60 60 chr13 76564585 76564883 -25308286 - AluJb SINE Alu -14 298 1 28 48 0 0 chr13 76565015 76565057 -25308112 + AT_rich Low_complexity Low_complexity 1 42 0 191 233 0 27 chr13 76565446 76565519 -25307650 + GA-rich Low_complexity Low_complexity 2 72 0 685 237 62 6 chr13 76565529 76565706 -25307463 + MLT1C LTR MaLR 6 192 -275 2553 179 64 76 chr13 76565709 76566445 -25306724 + LTR8A LTR ERV1 1 727 0 790 259 72 12 chr13 76566492 76566743 -25306426 + MLT1C LTR MaLR 202 467 0 189 0 0 0 chr13 76567253 76567274 -25305895 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1848 133 217 3 chr13 76567378 76567760 -25305409 + MER4C LTR ERV1 2 465 0 912 224 54 14 chr13 76568383 76568589 -25304580 - MER67C LTR ERV1 -307 403 189 233 321 75 0 chr13 76568589 76568695 -25304474 + LTR1B LTR ERV1 1 114 -712 1978 202 100 141 chr13 76568700 76569547 -25303622 + LTR28 LTR ERV1 208 1020 0 623 200 95 0 chr13 76569547 76569726 -25303443 - MER67D LTR ERV1 -514 196 2 255 294 44 37 chr13 76570323 76570459 -25302710 - MIR SINE MIR 0 262 126 1616 246 58 49 chr13 76570495 76571028 -25302141 - LTR29 LTR ERV1 0 622 85 775 157 14 14 chr13 76571032 76571179 -25301990 + LOR1b LTR ERV1 1 147 -314 2121 190 3 0 chr13 76571280 76571644 -25301525 + LOR1a LTR ERV1 133 497 0 510 141 0 35 chr13 76571645 76571730 -25301439 - LTR29 LTR ERV1 -540 82 1 25 0 0 0 chr13 76572138 76572163 -25301006 + AT_rich Low_complexity Low_complexity 1 25 0 1273 291 55 17 chr13 76572258 76572732 -25300437 - L1ME1 LINE L1 -17 6149 5658 1812 147 36 33 chr13 76572856 76573163 -25300006 - AluSx SINE Alu -4 308 1 897 193 62 21 chr13 76573195 76573343 -25299826 - L1MA9 LINE L1 -1 6311 6148 282 95 0 0 chr13 76573343 76573385 -25299784 + (TG)n Simple_repeat Simple_repeat 2 43 0 897 193 62 21 chr13 76573385 76573479 -25299690 - L1MA9 LINE L1 -164 6148 6059 1534 239 110 4 chr13 76573532 76574033 -25299136 - L1ME1 LINE L1 -1221 4925 4372 310 291 126 41 chr13 76574049 76574111 -25299058 + L1M4 LINE L1 3805 3860 -2286 1737 164 79 20 chr13 76574111 76574464 -25298705 + THE1C LTR MaLR 2 375 0 310 291 126 41 chr13 76574464 76574814 -25298355 + L1M4 LINE L1 3860 4252 -1894 231 119 0 0 chr13 76575900 76575942 -25297227 + LTR66 LTR ERVL 398 439 -171 203 156 0 0 chr13 76575977 76576009 -25297160 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 1930 135 0 3 chr13 76576449 76576764 -25296405 - AluSx SINE Alu 0 314 1 232 193 18 0 chr13 76577157 76577214 -25295955 - L1MA4A LINE L1 -9 6294 6237 2577 175 6 2 chr13 76577357 76577853 -25295316 - L1MA4 LINE L1 -12 6288 5791 257 80 88 26 chr13 76577875 76577988 -25295181 + (TA)n Simple_repeat Simple_repeat 1 120 0 232 81 0 0 chr13 76578018 76578055 -25295114 + L1M1 LINE L1 5783 5819 -481 1418 156 21 0 chr13 76578079 76578322 -25294847 - L1MA4 LINE L1 -515 5785 5538 2842 176 15 44 chr13 76578335 76578989 -25294180 - L1MA4 LINE L1 -1409 4737 4103 21 0 0 0 chr13 76579032 76579053 -25294116 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr13 76579564 76579592 -25293577 + AT_rich Low_complexity Low_complexity 1 28 0 3895 195 113 59 chr13 76580942 76581909 -25291260 + LTR28 LTR ERV1 2 1020 0 1730 171 42 0 chr13 76582075 76582361 -25290808 + AluSx SINE Alu 1 298 -14 1268 310 72 15 chr13 76582981 76583455 -25289714 + L1M3d LINE L1 11 511 -5380 1942 188 136 0 chr13 76583463 76583905 -25289264 + L1M3d LINE L1 690 1191 -4700 1086 215 15 38 chr13 76583910 76584171 -25288998 - MLT1A1-int LTR MaLR -1479 256 2 1843 187 25 6 chr13 76584173 76584531 -25288638 - MLT1A1 LTR MaLR 0 365 1 2009 154 0 0 chr13 76585046 76585345 -25287824 + AluSq SINE Alu 1 299 -14 29 0 0 0 chr13 76585873 76585902 -25287267 + AT_rich Low_complexity Low_complexity 1 29 0 304 306 41 8 chr13 76586078 76586199 -25286970 - MER94 DNA DNA -9 125 1 700 296 66 16 chr13 76586223 76586466 -25286703 + MLT1J LTR MaLR 96 350 -161 245 316 36 50 chr13 76586522 76586661 -25286508 - MLT1J LTR MaLR -50 461 325 434 243 0 47 chr13 76586667 76586774 -25286395 + MER5A DNA MER1_type 9 110 -79 269 323 77 57 chr13 76588128 76588376 -25284793 + MIR SINE MIR 7 259 -3 281 270 96 35 chr13 76588411 76588526 -25284643 + MER58 DNA MER1_type 1 122 -93 1632 198 23 23 chr13 76588608 76588951 -25284218 + MLT1A2 LTR MaLR 32 374 0 260 71 48 0 chr13 76589044 76589086 -25284083 + GA-rich Low_complexity Low_complexity 2 45 0 1822 151 19 44 chr13 76589341 76589705 -25283464 - THE1A LTR MaLR 0 355 1 4538 103 11 0 chr13 76589714 76590343 -25282826 - THE1A-int LTR MaLR -9 1571 936 582 313 39 31 chr13 76590348 76590764 -25282405 - L1MEc LINE L1 -4951 1445 1027 215 244 0 0 chr13 76590766 76590807 -25282362 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 990 304 16 58 chr13 76590811 76591262 -25281907 - L1MEc LINE L1 -5560 836 405 216 306 0 42 chr13 76591552 76591624 -25281545 - MER5B DNA MER1_type -109 69 1 25 31 0 0 chr13 76591801 76591833 -25281336 + AT_rich Low_complexity Low_complexity 1 32 0 227 321 28 9 chr13 76591879 76591985 -25281184 - HAL1 LINE L1 -890 1617 1510 2012 121 0 4 chr13 76592354 76592634 -25280535 + AluY SINE Alu 1 279 -32 279 0 0 0 chr13 76592636 76592667 -25280502 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr13 76592866 76592887 -25280282 + AT_rich Low_complexity Low_complexity 1 21 0 259 330 139 17 chr13 76593570 76593743 -25279426 - L1MC/D LINE L1 -2210 5575 5382 25 0 0 0 chr13 76594686 76594711 -25278458 + AT_rich Low_complexity Low_complexity 1 25 0 22 88 0 0 chr13 76595275 76595332 -25277837 + AT_rich Low_complexity Low_complexity 1 57 0 2166 123 0 0 chr13 76595925 76596227 -25276942 + AluSg SINE Alu 1 302 -8 441 301 56 15 chr13 76596438 76596680 -25276489 + L1MC4 LINE L1 6721 6850 -935 2741 147 51 53 chr13 76597249 76597787 -25275382 + MER61E LTR ERV1 1 612 0 1979 141 3 0 chr13 76597884 76598191 -25274978 - AluSx SINE Alu 0 308 1 21 0 0 0 chr13 76598200 76598221 -25274948 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 76598860 76598883 -25274286 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 76599006 76599036 -25274133 + AT_rich Low_complexity Low_complexity 1 30 0 1078 211 13 64 chr13 76599911 76600209 -25272960 - AluJo SINE Alu -24 288 6 21 0 0 0 chr13 76600622 76600643 -25272526 + AT_rich Low_complexity Low_complexity 1 21 0 201 330 19 47 chr13 76600999 76601105 -25272064 + L2 LINE L2 1529 1631 -1683 351 0 0 0 chr13 76601221 76601260 -25271909 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr13 76601882 76601903 -25271266 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 76602165 76602186 -25270983 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chr13 76602850 76602897 -25270272 + AT_rich Low_complexity Low_complexity 1 47 0 1204 270 162 15 chr13 76603585 76604772 -25268397 - Charlie2a DNA MER1_type -43 2819 1466 411 298 214 4 chr13 76604869 76605131 -25268038 - Charlie2a DNA MER1_type -2465 317 1 22 35 0 0 chr13 76606497 76606526 -25266643 + AT_rich Low_complexity Low_complexity 1 29 0 2888 166 4 70 chr13 76606529 76607017 -25266152 + L1PA5 LINE L1 5684 6139 -15 194 0 39 0 chr13 76607017 76607043 -25266126 + (TA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr13 76607188 76607211 -25265958 + AT_rich Low_complexity Low_complexity 1 23 0 464 206 144 0 chr13 76608206 76608352 -25264817 - L1MA8 LINE L1 -4 6287 6121 3841 152 107 16 chr13 76608493 76609250 -25263919 - LTR1B LTR ERV1 0 826 1 1192 262 60 31 chr13 76609576 76610030 -25263139 - MLT1C LTR MaLR 0 467 1 278 338 103 48 chr13 76610268 76610558 -25262611 + L3 LINE CR1 1070 1375 -202 1149 283 46 49 chr13 76611613 76612312 -25260857 + L1M4 LINE L1 3256 3952 -2194 674 237 78 78 chr13 76612327 76612419 -25260750 + L1M4 LINE L1 4035 4126 -2020 1759 153 17 10 chr13 76612419 76612719 -25260450 + AluSx SINE Alu 1 302 -10 674 237 78 78 chr13 76612719 76613060 -25260109 + L1M4 LINE L1 4125 4468 -1678 216 200 0 0 chr13 76613238 76613288 -25259881 + GA-rich Low_complexity Low_complexity 3 52 0 334 372 49 28 chr13 76613799 76614186 -25258983 + L1M4 LINE L1 2429 2823 -3323 429 270 67 19 chr13 76614249 76614608 -25258561 + L1M4 LINE L1 2898 3273 -2873 236 254 256 77 chr13 76614650 76615052 -25258117 + HAL1 LINE L1 37 510 -1997 485 347 74 45 chr13 76615109 76615512 -25257657 + L2 LINE L2 2847 3261 -52 236 164 0 16 chr13 76615707 76615768 -25257401 + L1MC4 LINE L1 6644 6703 -1339 278 272 0 0 chr13 76616089 76616170 -25256999 + (TA)n Simple_repeat Simple_repeat 2 82 0 234 255 49 20 chr13 76616442 76616544 -25256625 - L1MEd LINE L1 -5336 783 679 354 409 25 30 chr13 76616630 76616867 -25256302 - L1MEd LINE L1 -5503 616 381 227 178 22 0 chr13 76617464 76617509 -25255660 - L1MEd LINE L1 -6028 91 46 385 241 98 9 chr13 76617780 76617892 -25255277 + L1ME LINE L1 5539 5660 -461 556 254 75 38 chr13 76618327 76618662 -25254507 - LTR35 LTR ERV1 0 676 350 2370 117 20 25 chr13 76618925 76619283 -25253886 - LTR18A LTR ERVL -1 356 1 28869 166 13 4 chr13 76619284 76623848 -25249321 - HERVL18 LTR ERVL 0 6047 1441 560 169 0 0 chr13 76623848 76623937 -25249232 - LTR18A LTR ERVL -268 89 1 244 246 107 33 chr13 76624821 76624943 -25248226 - MIR SINE MIR 0 262 132 2088 113 7 7 chr13 76625187 76625480 -25247689 + AluSx SINE Alu 1 293 -19 238 187 40 0 chr13 76625613 76625688 -25247481 + (TA)n Simple_repeat Simple_repeat 2 79 0 21 57 0 0 chr13 76625694 76625729 -25247440 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr13 76625802 76625843 -25247326 + AT_rich Low_complexity Low_complexity 1 41 0 383 275 28 56 chr13 76625892 76626034 -25247135 - L2 LINE L2 -733 2581 2444 514 224 85 89 chr13 76626144 76626403 -25246766 + MLT1I LTR MaLR 82 339 -70 1947 89 0 0 chr13 76626404 76626650 -25246519 + AluSx SINE Alu 30 275 -37 270 0 0 0 chr13 76626651 76626681 -25246488 + (TC)n Simple_repeat Simple_repeat 1 30 0 342 206 0 0 chr13 76626682 76626755 -25246414 + (TA)n Simple_repeat Simple_repeat 1 73 0 350 289 0 0 chr13 76626757 76626847 -25246322 - L1MC4 LINE L1 -1339 6703 6614 1461 219 20 51 chr13 76627143 76627535 -25245634 + MLT1D LTR MaLR 126 505 0 445 231 29 10 chr13 76627893 76627997 -25245172 - MER5B DNA MER1_type -71 107 2 189 345 18 0 chr13 76628634 76628689 -25244480 - MER5B DNA MER1_type -122 56 1 711 259 80 0 chr13 76631380 76631581 -25241588 - MER58A DNA MER1_type -4 220 4 525 32 0 0 chr13 76632956 76633019 -25240150 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 490 246 179 70 chr13 76633145 76633458 -25239711 + L1ME4a LINE L1 5564 5910 -211 458 291 121 32 chr13 76633996 76634309 -25238860 + LTR16C LTR ERVL 151 491 0 404 321 107 18 chr13 76634790 76635231 -25237938 + L1ME1 LINE L1 4547 5035 -1111 264 312 176 27 chr13 76635587 76635956 -25237213 + L1ME1 LINE L1 5493 5916 -250 330 312 108 0 chr13 76636455 76636612 -25236557 - MIR SINE MIR -42 220 47 252 390 8 8 chr13 76636764 76636882 -25236287 + L2 LINE L2 3154 3271 -1 21 0 0 0 chr13 76638456 76638477 -25234692 + AT_rich Low_complexity Low_complexity 1 21 0 41 0 0 0 chr13 76638516 76638557 -25234612 + AT_rich Low_complexity Low_complexity 1 41 0 363 356 120 15 chr13 76638609 76638876 -25234293 - L3 LINE CR1 -264 1313 1019 321 412 34 7 chr13 76638991 76639139 -25234030 + MER91A DNA MER1_type 3 154 -42 512 255 147 104 chr13 76639198 76639715 -25233454 + MLT1H LTR MaLR 12 550 -5 1407 118 10 0 chr13 76639960 76640155 -25233014 + AluSg/x SINE Alu 109 305 -7 29 28 0 0 chr13 76640927 76640963 -25232206 + AT_rich Low_complexity Low_complexity 1 36 0 614 210 34 0 chr13 76642003 76642122 -25231047 + AluJo SINE Alu 13 135 -177 2316 109 0 0 chr13 76642453 76642756 -25230413 + AluSq SINE Alu 1 303 -10 2227 115 0 0 chr13 76644309 76644614 -25228555 + AluSx SINE Alu 1 305 -7 1986 258 134 47 chr13 76644696 76645484 -25227685 + L1M4b LINE L1 19 875 -5984 1026 112 11 6 chr13 76645487 76645666 -25227503 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1705 189 3 6 chr13 76645684 76646166 -25227003 - AluSx SINE Alu 0 481 1 2198 86 21 0 chr13 76646241 76646532 -25226637 + AluSp SINE Alu 17 313 0 537 208 87 27 chr13 76646533 76646682 -25226487 + L1M4b LINE L1 898 1055 -5804 1359 171 8 50 chr13 76646959 76647244 -25225925 - AluSx SINE Alu 0 312 39 260 284 91 11 chr13 76647912 76648000 -25225169 - MIR SINE MIR -134 128 34 371 344 28 11 chr13 76648034 76648214 -25224955 + L2 LINE L2 2218 2400 -914 375 262 71 28 chr13 76648286 76648427 -25224742 - MIR SINE MIR 0 262 116 2198 152 22 0 chr13 76648430 76648785 -25224384 - THE1B LTR MaLR -1 363 1 9779 127 43 3 chr13 76648785 76650304 -25222865 - THE1B-int LTR MaLR 0 1580 1 2132 140 28 11 chr13 76650304 76650662 -25222507 - THE1B LTR MaLR 0 364 1 351 342 106 43 chr13 76650760 76651202 -25221967 + L2 LINE L2 2508 2977 -337 281 100 0 0 chr13 76651221 76651261 -25221908 - MLT2A2 LTR ERVL -11 442 403 270 161 65 0 chr13 76651338 76651400 -25221769 + MLT2B1 LTR ERVL 455 520 0 226 191 0 0 chr13 76651439 76651481 -25221688 + MLT2A2 LTR ERVL 404 445 -8 225 0 0 0 chr13 76651511 76651536 -25221633 + (TA)n Simple_repeat Simple_repeat 2 26 0 228 111 0 0 chr13 76651589 76651625 -25221544 + (TA)n Simple_repeat Simple_repeat 2 37 0 228 232 85 12 chr13 76651639 76651721 -25221448 + L1MC4 LINE L1 6615 6702 -1340 2837 80 22 15 chr13 76651780 76652181 -25220988 - MLT2A1 LTR ERVL -40 404 1 191 388 12 12 chr13 76652356 76652441 -25220728 + L2 LINE L2 3137 3221 -51 288 53 0 0 chr13 76652506 76652544 -25220625 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 198 358 54 67 chr13 76653702 76653768 -25219401 + L2 LINE L2 2597 2662 -652 1844 145 125 43 chr13 76653768 76654167 -25219002 - MSTB1 LTR MaLR 0 432 1 198 358 54 67 chr13 76654167 76654340 -25218829 + L2 LINE L2 2662 2833 -481 432 296 96 84 chr13 76654480 76654815 -25218354 - MLT1L LTR MaLR -253 362 24 571 216 159 11 chr13 76656050 76656226 -25216943 - MIR SINE MIR -30 232 31 218 307 0 0 chr13 76656393 76656468 -25216701 + L2 LINE L2 2716 2790 -524 1998 140 76 20 chr13 76656725 76657068 -25216101 + THE1B LTR MaLR 1 362 -2 11217 112 6 3 chr13 76657070 76658630 -25214539 + THE1B-int LTR MaLR 1 1566 -14 1627 174 35 17 chr13 76658637 76658925 -25214244 + THE1B LTR MaLR 71 363 -1 7632 22 2 0 chr13 76659286 76660483 -25212686 + L1PA3 LINE L1 5000 6195 0 294 258 38 101 chr13 76660587 76660746 -25212423 - MIR SINE MIR -15 247 99 324 304 62 25 chr13 76661058 76661219 -25211950 - MIR SINE MIR -37 225 59 326 263 88 26 chr13 76661595 76661709 -25211460 + L2 LINE L2 3190 3310 -3 327 336 43 0 chr13 76662150 76662290 -25210879 - MIR SINE MIR -14 248 103 288 291 23 0 chr13 76662374 76662460 -25210709 - MER5A DNA MER1_type -95 94 7 1288 184 4 21 chr13 76663018 76663257 -25209912 - AluJb SINE Alu -25 287 53 4837 246 43 55 chr13 76663733 76665135 -25208034 + L1PA12 LINE L1 9 2481 -5103 341 205 79 0 chr13 76665290 76665417 -25207752 + L1PA12 LINE L1 2355 2491 -5093 5684 102 50 5 chr13 76665422 76667257 -25205912 + L1PA11 LINE L1 4306 6170 -4 785 189 0 94 chr13 76667273 76667453 -25205716 + FRAM SINE Alu 1 163 -3 2076 103 7 0 chr13 76667909 76668224 -25204945 - AluSx SINE Alu 0 317 1 212 313 81 20 chr13 76668531 76668630 -25204539 + MIR SINE MIR 102 206 -56 2059 127 3 0 chr13 76668886 76669178 -25203991 - AluY SINE Alu -18 293 1 42510 35 22 2 chr13 76669762 76675824 -25197345 + L1PA3 LINE L1 1 6155 0 1649 166 76 71 chr13 76676241 76676440 -25196729 + L1MA6 LINE L1 5864 6061 -239 1726 165 7 29 chr13 76676440 76676749 -25196420 - AluJo SINE Alu -9 303 2 1649 166 76 71 chr13 76676749 76676972 -25196197 + L1MA6 LINE L1 6061 6288 -12 261 233 27 0 chr13 76677026 76677099 -25196070 + (TA)n Simple_repeat Simple_repeat 2 76 0 28 61 0 0 chr13 76677108 76677157 -25196012 + AT_rich Low_complexity Low_complexity 1 49 0 238 315 172 45 chr13 76677999 76678307 -25194862 + L2 LINE L2 2858 3204 -109 635 260 12 23 chr13 76678307 76678480 -25194689 - MER5B DNA MER1_type -1 177 7 195 356 0 0 chr13 76678513 76678586 -25194583 + L2 LINE L2 3168 3240 -32 526 248 16 8 chr13 76678796 76678925 -25194244 + MIR SINE MIR 69 198 -64 21 100 0 0 chr13 76679230 76679300 -25193869 + AT_rich Low_complexity Low_complexity 1 70 0 2143 111 0 3 chr13 76680487 76680784 -25192385 - AluSq SINE Alu -17 296 1 447 306 46 25 chr13 76683188 76683384 -25189785 + MIR SINE MIR 52 251 -11 27 29 0 0 chr13 76683385 76683419 -25189750 + AT_rich Low_complexity Low_complexity 1 34 0 192 125 0 0 chr13 76683478 76683510 -25189659 + (TG)n Simple_repeat Simple_repeat 1 32 0 1096 143 20 25 chr13 76684100 76684296 -25188873 - L1MA4 LINE L1 -26 6274 6080 13530 150 47 10 chr13 76685112 76687443 -25185726 - Tigger1 DNA MER2_type -1 2417 1 688 189 0 0 chr13 76688012 76688139 -25185030 - Tigger1 DNA MER2_type -1935 483 357 22 0 0 0 chr13 76688372 76688394 -25184775 + AT_rich Low_complexity Low_complexity 1 22 0 1065 237 142 49 chr13 76688572 76688885 -25184284 + MLT1E1 LTR MaLR 185 550 -104 2438 101 50 0 chr13 76688885 76689223 -25183946 + THE1A LTR MaLR 1 355 0 1065 237 142 49 chr13 76689223 76689339 -25183830 + MLT1E1 LTR MaLR 550 654 0 233 187 13 0 chr13 76690016 76690091 -25183078 + (TA)n Simple_repeat Simple_repeat 1 76 0 2460 69 0 3 chr13 76690725 76691029 -25182140 - AluY SINE Alu -8 303 1 274 310 53 33 chr13 76693152 76693397 -25179772 + L1ME LINE L1 5460 5709 -412 1459 224 48 39 chr13 76695356 76695815 -25177354 - MLT1C LTR MaLR 0 467 5 376 296 86 41 chr13 76695824 76696067 -25177102 + LTR40a LTR ERVL 265 518 -1 2272 51 37 0 chr13 76698504 76698798 -25174371 - AluY SINE Alu -6 305 1 25 75 0 0 chr13 76699177 76699230 -25173939 + AT_rich Low_complexity Low_complexity 1 53 0 642 236 22 62 chr13 76699270 76699495 -25173674 - MER20 DNA MER1_type 0 219 4 1953 168 89 8 chr13 76699958 76700352 -25172817 - MSTB LTR MaLR 0 426 1 507 266 0 63 chr13 76701470 76701581 -25171588 - L2 LINE L2 -1 3312 3210 2353 70 27 0 chr13 76701581 76701879 -25171290 - AluY SINE Alu -5 306 1 507 266 0 63 chr13 76701879 76701910 -25171259 - L2 LINE L2 -103 3210 3179 421 292 118 15 chr13 76702308 76702503 -25170666 - MLT1J LTR MaLR -296 215 1 396 0 0 0 chr13 76703368 76703412 -25169757 + (CA)n Simple_repeat Simple_repeat 2 45 0 1433 206 30 10 chr13 76703610 76703726 -25169443 + AluJb SINE Alu 6 118 -194 423 0 0 0 chr13 76703726 76703773 -25169396 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1433 206 30 10 chr13 76703773 76703957 -25169212 + AluJb SINE Alu 118 312 0 21 36 0 0 chr13 76704041 76704069 -25169100 + AT_rich Low_complexity Low_complexity 1 28 0 333 23 0 0 chr13 76704522 76704565 -25168604 - L1PA13 LINE L1 -2 6161 6119 1574 231 49 0 chr13 76705139 76705485 -25167684 + MLT1A1 LTR MaLR 1 363 -2 805 172 172 0 chr13 76705487 76705667 -25167502 + MLT1A1-int LTR MaLR 1 211 -1524 3082 229 24 61 chr13 76705669 76706510 -25166659 + MLT1A1-int LTR MaLR 360 1169 -566 1079 178 60 0 chr13 76706510 76706695 -25166474 + MLT1A1 LTR MaLR 170 365 0 319 298 9 6 chr13 76706951 76707066 -25166103 - MER5A DNA MER1_type -6 183 58 6308 196 31 59 chr13 76708206 76708372 -25164797 - L1MA10 LINE L1 -1 6333 6164 279 0 0 0 chr13 76708372 76708403 -25164766 + (TG)n Simple_repeat Simple_repeat 2 32 0 6308 196 31 59 chr13 76708403 76709142 -25164027 - L1MA10 LINE L1 -170 6164 5406 2752 95 0 11 chr13 76709142 76709521 -25163648 - THE1C LTR MaLR 0 375 1 6308 196 31 59 chr13 76709521 76709940 -25163229 - L1MA10 LINE L1 -928 5406 4977 2159 124 0 7 chr13 76709940 76710246 -25162923 + AluSq SINE Alu 1 304 -9 6308 196 31 59 chr13 76710246 76711550 -25161619 - L1MA10 LINE L1 -1357 4977 3912 2225 104 7 0 chr13 76711550 76711849 -25161320 + AluY SINE Alu 1 301 -10 6308 196 31 59 chr13 76711849 76712492 -25160677 - L1MA10 LINE L1 -2422 3912 3253 2589 114 39 5 chr13 76712499 76712886 -25160283 + MLT2A1 LTR ERVL 1 400 -44 270 96 77 19 chr13 76712941 76712993 -25160176 + MLT2A1 LTR ERVL 399 453 0 974 235 56 7 chr13 76712994 76713300 -25159869 - L1MA10 LINE L1 -2897 3249 2929 737 128 34 34 chr13 76713316 76713465 -25159704 - L1MA6 LINE L1 0 6300 6152 326 376 61 0 chr13 76713652 76713849 -25159320 + L1ME LINE L1 5595 5803 -318 227 279 0 0 chr13 76714747 76714815 -25158354 + (TA)n Simple_repeat Simple_repeat 2 69 0 296 366 64 37 chr13 76715330 76715707 -25157462 - L2 LINE L2 -80 3233 2847 209 33 33 0 chr13 76716814 76716844 -25156325 + (TA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr13 76717013 76717034 -25156135 + AT_rich Low_complexity Low_complexity 1 21 0 247 337 25 12 chr13 76717034 76717197 -25155972 + L1M4 LINE L1 5468 5632 -546 267 390 60 53 chr13 76718241 76718523 -25154646 - L2 LINE L2 -41 3231 2948 2027 177 8 18 chr13 76718854 76719244 -25153925 + L1MC1 LINE L1 5937 6322 -11 21 0 0 0 chr13 76719244 76719265 -25153904 + AT_rich Low_complexity Low_complexity 1 21 0 288 70 0 0 chr13 76720073 76720116 -25153053 + (TG)n Simple_repeat Simple_repeat 2 44 0 2134 163 14 35 chr13 76720701 76720766 -25152403 - MLT2D LTR ERVL 0 414 349 495 33 0 0 chr13 76720766 76720827 -25152342 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2134 163 14 35 chr13 76720827 76721184 -25151985 - MLT2D LTR ERVL -65 349 1 357 311 44 71 chr13 76723427 76723652 -25149517 - MIR SINE MIR -30 232 14 224 358 45 0 chr13 76725178 76725245 -25147924 - MIR3 SINE MIR -53 155 86 21 36 0 0 chr13 76726558 76726586 -25146583 + AT_rich Low_complexity Low_complexity 1 28 0 244 208 0 57 chr13 76726755 76726808 -25146361 + L2 LINE L2 3263 3312 -1 203 302 193 33 chr13 76726841 76727053 -25146116 - MIR SINE MIR -11 251 6 2145 128 50 8 chr13 76727238 76727598 -25145571 + THE1C LTR MaLR 1 375 0 563 311 71 53 chr13 76729927 76730364 -25142805 - HAL1 LINE L1 -813 1694 1250 611 251 43 89 chr13 76730364 76730734 -25142435 - L1ME3A LINE L1 -1 6169 5817 288 248 64 16 chr13 76730739 76730864 -25142305 - L1ME3A LINE L1 -764 5478 5348 736 257 72 48 chr13 76730877 76731290 -25141879 - L1ME3A LINE L1 -844 5302 4875 2249 75 10 3 chr13 76731290 76731585 -25141584 - AluY SINE Alu -14 297 1 736 257 72 48 chr13 76731585 76731646 -25141523 - L1ME3A LINE L1 -1271 4875 4817 608 313 74 7 chr13 76731710 76732007 -25141162 + L1MEc LINE L1 159 475 -5921 320 291 48 37 chr13 76732016 76732205 -25140964 + L1MEc LINE L1 529 719 -5677 411 250 146 18 chr13 76732211 76732431 -25140738 + L1MEc LINE L1 764 1011 -5385 585 317 52 29 chr13 76732851 76733405 -25139764 + ERVL LTR ERVL 3743 4322 -1332 489 348 43 19 chr13 76733550 76733918 -25139251 + ERVL LTR ERVL 4539 4915 -849 1088 285 43 7 chr13 76733964 76734269 -25138900 + LTR16A LTR ERVL 134 449 -1 1634 171 7 40 chr13 76734300 76734599 -25138570 + AluJo SINE Alu 3 291 -21 26 0 0 0 chr13 76734725 76734751 -25138418 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chr13 76735180 76735226 -25137943 + AT_rich Low_complexity Low_complexity 1 46 0 2177 113 5 54 chr13 76736191 76736562 -25136607 + THE1A LTR MaLR 3 355 0 10809 101 17 8 chr13 76736563 76737060 -25136109 + THE1A-int LTR MaLR 2 493 -1087 2431 50 0 0 chr13 76737060 76737371 -25135798 + AluY SINE Alu 1 311 0 10809 101 17 8 chr13 76737371 76738434 -25134735 + THE1A-int LTR MaLR 493 1578 -2 2188 132 11 11 chr13 76738436 76738791 -25134378 + THE1A LTR MaLR 1 355 0 1783 175 14 23 chr13 76739455 76739804 -25133365 + MER47A DNA MER2_type 20 365 -1 955 161 5 34 chr13 76739814 76740019 -25133150 - L1 LINE L1 -1181 4965 4767 8565 93 25 4 chr13 76740077 76742110 -25131059 - L1PA7 LINE L1 -1 6153 4095 8356 123 15 4 chr13 76742110 76743734 -25129435 + L1P LINE L1 3482 5171 -975 1951 187 25 0 chr13 76743730 76744125 -25129044 - L1 LINE L1 -1370 4776 4372 * 1171 190 37 0 chr13 76744126 76744368 -25128801 + L1MA8 LINE L1 6029 6279 -12 28 91 0 0 chr13 76744368 76744445 -25128724 + AT_rich Low_complexity Low_complexity 1 77 0 912 221 18 28 chr13 76744574 76744791 -25128378 - MLT1B LTR MaLR 0 390 176 2026 129 10 10 chr13 76745004 76745306 -25127863 - AluSx SINE Alu 0 312 11 368 177 13 13 chr13 76745912 76745991 -25127178 - LTR54 LTR ERV1 0 510 432 * 870 232 31 32 chr13 76745971 76746269 -25126900 - MER57A LTR ERV1 -58 345 63 2065 143 0 16 chr13 76746505 76746819 -25126350 - AluSx SINE Alu 0 312 4 1057 177 30 55 chr13 76746966 76747056 -25126113 + MLT2D LTR ERVL 1 92 -322 2126 138 0 0 chr13 76747056 76747368 -25125801 - AluSx SINE Alu 0 312 1 1057 177 30 55 chr13 76747368 76747514 -25125655 + MLT2D LTR ERVL 92 231 -183 183 250 36 18 chr13 76747778 76747834 -25125335 - MIR SINE MIR -67 141 85 199 282 184 19 chr13 76748948 76749051 -25124118 - MIR SINE MIR -26 236 117 * 2879 286 65 76 chr13 76749006 76750963 -25122206 + L2 LINE L2 1372 3312 -1 2264 74 40 0 chr13 76751177 76751473 -25121696 - AluY SINE Alu -3 308 1 232 312 64 9 chr13 76751521 76751630 -25121539 - L2 LINE L2 -1288 2026 1912 285 302 142 0 chr13 76751699 76751805 -25121364 + L2 LINE L2 2658 2778 -536 31 26 0 0 chr13 76751844 76751882 -25121287 + AT_rich Low_complexity Low_complexity 1 38 0 395 225 45 0 chr13 76752419 76752508 -25120661 - MER58C DNA MER1_type 0 215 123 227 100 0 25 chr13 76752648 76752688 -25120481 + (TCC)n Simple_repeat Simple_repeat 2 40 0 511 274 0 1 chr13 76752690 76752825 -25120344 - MER58 DNA MER1_type -81 134 1 1148 279 148 2 chr13 76752983 76753388 -25119781 + LTR16B LTR ERVL 1 464 0 1179 169 46 109 chr13 76753470 76753884 -25119285 - MLT1B LTR MaLR -2 388 1 216 211 19 19 chr13 76754124 76754176 -25118993 + CT-rich Low_complexity Low_complexity 2 53 0 25 0 0 0 chr13 76754550 76754575 -25118594 + AT_rich Low_complexity Low_complexity 1 25 0 2449 42 0 29 chr13 76754743 76755052 -25118117 + AluY SINE Alu 1 300 -11 1891 313 70 45 chr13 76755325 76756709 -25116460 + L2 LINE L2 1862 3292 -21 190 321 37 18 chr13 76756729 76756838 -25116331 - MIR SINE MIR -111 151 41 204 132 0 26 chr13 76756839 76756877 -25116292 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1344 223 37 0 chr13 76757548 76757721 -25115448 - AluJo SINE Alu -7 305 117 194 0 0 37 chr13 76757721 76757748 -25115421 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1344 223 37 0 chr13 76757748 76757847 -25115322 - AluJo SINE Alu -195 117 23 219 88 0 0 chr13 76759305 76759339 -25113830 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5725 149 13 8 chr13 76760088 76760761 -25112408 + L1PB1 LINE L1 4613 5281 -870 3390 71 16 2 chr13 76760761 76761199 -25111970 - MLT2A1 LTR ERVL 0 444 1 5725 149 13 8 chr13 76761199 76761694 -25111475 + L1PB1 LINE L1 5281 5796 -355 261 0 0 0 chr13 76761694 76761723 -25111446 + (TA)n Simple_repeat Simple_repeat 2 30 0 5725 149 13 8 chr13 76761723 76762079 -25111090 + L1PB1 LINE L1 5796 6149 -2 251 352 94 0 chr13 76762172 76762300 -25110869 - MIR SINE MIR -35 227 88 361 308 35 0 chr13 76762591 76762734 -25110435 - L2 LINE L2 0 3313 3166 1348 212 48 61 chr13 76763011 76763466 -25109703 + MLT2B1 LTR ERVL 1 414 0 863 212 27 0 chr13 76763527 76763711 -25109458 - MER5A DNA MER1_type 0 189 1 23 33 0 0 chr13 76765363 76765393 -25107776 + AT_rich Low_complexity Low_complexity 1 30 0 1741 172 4 4 chr13 76765394 76765673 -25107496 - AluJo SINE Alu -31 281 3 245 313 40 30 chr13 76766182 76766281 -25106888 - L2 LINE L2 -4 3268 3169 256 326 102 48 chr13 76767953 76768247 -25104922 - L2 LINE L2 -3 3310 3001 734 379 60 29 chr13 76768452 76769238 -25103931 - L2 LINE L2 -528 2786 1977 1826 143 0 56 chr13 76770226 76770548 -25102621 - AluSq SINE Alu -3 310 7 200 313 0 60 chr13 76770554 76770637 -25102532 - L2 LINE L2 -7 3265 3188 288 154 0 0 chr13 76771013 76771065 -25102104 + T-rich Low_complexity Low_complexity 1 52 0 544 264 39 58 chr13 76771940 76772148 -25101021 + MIR SINE MIR 37 240 -22 21 57 0 0 chr13 76773473 76773508 -25099661 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr13 76774053 76774088 -25099081 + AT_rich Low_complexity Low_complexity 1 35 0 447 303 109 49 chr13 76774115 76774462 -25098707 - MLT1I LTR MaLR -10 399 32 208 318 125 11 chr13 76774515 76774603 -25098566 - MIR SINE MIR -67 141 44 353 338 50 14 chr13 76774922 76775061 -25098108 + L2 LINE L2 3122 3265 -7 282 197 14 56 chr13 76775639 76775710 -25097459 - MIR SINE MIR -74 134 66 302 264 6 39 chr13 76776928 76777106 -25096063 + Charlie7 DNA MER1_type 2366 2537 -75 334 135 19 0 chr13 76777432 76777484 -25095685 - MER4A LTR ERV1 -351 313 261 652 121 0 10 chr13 76777484 76777583 -25095586 - MER4A LTR ERV1 -566 98 1 1713 106 0 72 chr13 76777592 76777885 -25095284 + AluSx SINE Alu 41 312 0 577 135 21 10 chr13 76777915 76778011 -25095158 + MER4A LTR ERV1 1 97 -567 1875 152 6 19 chr13 76778012 76778360 -25094809 + MER4A LTR ERV1 263 664 0 255 233 0 0 chr13 76780051 76780094 -25093075 + L3 LINE CR1 1527 1569 -8 22 0 0 0 chr13 76781342 76781364 -25091805 + AT_rich Low_complexity Low_complexity 1 22 0 262 418 16 8 chr13 76781421 76781543 -25091626 + L2 LINE L2 3134 3256 -16 566 287 4 88 chr13 76781652 76781913 -25091256 - MIR SINE MIR -21 241 3 395 347 68 8 chr13 76782516 76782781 -25090388 + L2 LINE L2 2243 2523 -791 2192 87 17 0 chr13 76783039 76783337 -25089832 + AluSp SINE Alu 1 303 -10 181 385 0 0 chr13 76783408 76783473 -25089696 + L2 LINE L2 3154 3218 -54 229 325 13 13 chr13 76783508 76783585 -25089584 - L2 LINE L2 -1354 1960 1884 959 206 235 0 chr13 76786270 76786509 -25086660 - MER7A DNA MER2_type -2692 346 32 450 0 0 0 chr13 76786509 76786559 -25086610 + (TA)n Simple_repeat Simple_repeat 2 51 0 959 206 235 0 chr13 76786559 76786600 -25086569 - MER7A DNA MER2_type -3006 32 2 25 83 0 0 chr13 76787429 76787489 -25085680 + AT_rich Low_complexity Low_complexity 1 60 0 420 242 30 0 chr13 76787743 76787842 -25085327 - U6 snRNA snRNA -4 103 2 4759 163 54 21 chr13 76787930 76789421 -25083748 - L1MA7 LINE L1 -10 7700 6158 927 161 85 15 chr13 76789421 76789620 -25083549 - Tigger1 DNA MER2_type 0 2418 2206 910 158 0 48 chr13 76789613 76789778 -25083391 - Tigger1 DNA MER2_type -2261 157 1 * 10451 205 44 17 chr13 76789782 76792061 -25081108 - L1MA7 LINE L1 -1410 6155 3797 2311 84 0 10 chr13 76792061 76792370 -25080799 - AluY SINE Alu -5 306 1 10451 205 44 17 chr13 76792370 76792593 -25080576 - L1MA7 LINE L1 -3768 3797 3582 315 225 56 0 chr13 76792683 76792754 -25080415 + MLT1A2 LTR MaLR 298 372 -2 809 267 27 107 chr13 76792758 76793018 -25080151 + MLT1A2-int LTR MaLR 3 338 -1172 226 313 0 0 chr13 76793086 76793150 -25080019 + MLT1A2-int LTR MaLR 676 739 -996 24 0 0 0 chr13 76793240 76793264 -25079905 + AT_rich Low_complexity Low_complexity 1 24 0 2215 127 31 6 chr13 76793341 76793696 -25079473 - THE1B LTR MaLR 0 364 1 191 321 114 53 chr13 76793827 76793958 -25079211 + MIR SINE MIR 53 191 -71 23 68 0 0 chr13 76794019 76794063 -25079106 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr13 76794192 76794229 -25078940 + AT_rich Low_complexity Low_complexity 1 37 0 41 0 0 0 chr13 76794661 76794702 -25078467 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr13 76795332 76795358 -25077811 + AT_rich Low_complexity Low_complexity 1 26 0 238 294 0 0 chr13 76795983 76796051 -25077118 + CT-rich Low_complexity Low_complexity 1 68 0 31 68 0 0 chr13 76796112 76796171 -25076998 + AT_rich Low_complexity Low_complexity 1 59 0 225 297 20 30 chr13 76798407 76798508 -25074661 + MIR3 SINE MIR 15 114 -94 28 71 0 0 chr13 76798841 76798897 -25074272 + AT_rich Low_complexity Low_complexity 1 56 0 204 342 51 8 chr13 76799145 76799262 -25073907 - MIR SINE MIR -10 252 131 2066 147 0 0 chr13 76799922 76800234 -25072935 - AluSx SINE Alu 0 312 1 260 299 26 0 chr13 76800234 76800311 -25072858 + MER69 DNA AcHobo 4 82 -2444 415 246 16 53 chr13 76800369 76800638 -25072531 - L1ME2 LINE L1 -30 6068 4548 856 94 31 13 chr13 76801011 76801170 -25071999 + CT-rich Low_complexity Low_complexity 1 162 0 462 174 0 64 chr13 76801178 76801287 -25071882 - FLAM_A SINE Alu -11 131 30 294 286 22 0 chr13 76801296 76801387 -25071782 - L1ME2 LINE L1 -5888 182 90 1130 276 131 20 chr13 76801478 76802434 -25070735 + MER69 DNA AcHobo 108 2526 0 1582 181 3 16 chr13 76802572 76802876 -25070293 + AluJo SINE Alu 4 303 -9 895 254 45 38 chr13 76803359 76803623 -25069546 - LTR40a LTR ERVL 0 519 254 513 73 0 0 chr13 76803641 76803709 -25069460 - MADE1 DNA Mariner -1 79 12 * 544 253 122 35 chr13 76803691 76803920 -25069249 - LTR40a LTR ERVL -270 249 1 350 238 82 49 chr13 76803920 76804042 -25069127 - MIR SINE MIR -125 137 12 225 387 21 35 chr13 76804415 76804557 -25068612 - MIR SINE MIR -114 148 9 2250 104 13 0 chr13 76805367 76805675 -25067494 + AluSp SINE Alu 1 312 -1 300 197 0 55 chr13 76805744 76805871 -25067298 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 115 0 0 chr13 76808858 76808971 -25064198 + AT_rich Low_complexity Low_complexity 1 113 0 26 0 0 0 chr13 76809099 76809125 -25064044 + AT_rich Low_complexity Low_complexity 1 26 0 455 305 149 7 chr13 76809502 76809771 -25063398 - L2 LINE L2 -30 3283 2977 219 314 51 15 chr13 76810318 76810455 -25062714 + L2 LINE L2 2478 2619 -695 1023 272 95 28 chr13 76812849 76813342 -25059827 - MLT1F LTR MaLR -6 536 11 2140 116 3 10 chr13 76813399 76813701 -25059468 + AluSp SINE Alu 1 300 -13 1712 96 19 70 chr13 76814060 76814372 -25058797 - THE1C LTR MaLR -79 296 1 21 71 0 0 chr13 76814848 76814890 -25058279 + AT_rich Low_complexity Low_complexity 1 42 0 258 164 62 78 chr13 76815120 76815248 -25057921 + L1ME LINE L1 862 987 -5083 2193 106 0 7 chr13 76815380 76815673 -25057496 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr13 76816097 76816118 -25057051 + AT_rich Low_complexity Low_complexity 1 21 0 880 184 13 10 chr13 76816125 76816430 -25056739 - L1MA7 LINE L1 -14 6277 5866 419 338 88 9 chr13 76816597 76816825 -25056344 - L2 LINE L2 -518 2796 2551 1125 206 0 10 chr13 76816874 76817106 -25056063 - AluJo SINE Alu 0 314 85 2225 127 0 3 chr13 76817176 76817484 -25055685 + AluSx SINE Alu 1 307 -5 247 306 65 16 chr13 76817651 76817775 -25055394 - MIR SINE MIR -61 201 72 27599 127 12 56 chr13 76818882 76825311 -25047858 + L1PA7 LINE L1 12 6149 -5 21 0 0 0 chr13 76825330 76825351 -25047818 + AT_rich Low_complexity Low_complexity 1 21 0 361 177 0 21 chr13 76827903 76827999 -25045170 + (TA)n Simple_repeat Simple_repeat 1 94 0 1845 121 35 29 chr13 76828651 76828997 -25044172 - L1MA3 LINE L1 0 6305 5958 294 317 78 21 chr13 76829125 76829267 -25043902 + L2 LINE L2 3121 3270 -2 1938 137 57 33 chr13 76831635 76832001 -25041168 - THE1C LTR MaLR 0 375 1 5427 144 12 16 chr13 76832001 76832936 -25040233 - THE1C-int LTR MaLR 0 1580 650 1722 132 66 28 chr13 76832937 76833296 -25039873 - THE1C LTR MaLR -2 394 1 364 242 25 56 chr13 76833631 76833792 -25039377 - MLT1J LTR MaLR -61 450 295 1127 266 8 20 chr13 76833823 76834176 -25038993 - MLT1A2 LTR MaLR 0 374 26 607 295 43 0 chr13 76834432 76834642 -25038527 + MER58A DNA MER1_type 5 223 -1 22 0 0 0 chr13 76837036 76837058 -25036111 + AT_rich Low_complexity Low_complexity 1 22 0 207 227 0 0 chr13 76837130 76837174 -25035995 - L2 LINE L2 0 3313 3270 374 301 285 0 chr13 76838410 76838603 -25034566 + MIR SINE MIR 15 262 0 219 36 0 0 chr13 76841329 76841357 -25031812 + (CAAAG)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr13 76841482 76841526 -25031643 + AT_rich Low_complexity Low_complexity 1 44 0 1807 124 21 59 chr13 76842466 76842662 -25030507 - THE1B LTR MaLR 0 364 185 2134 122 0 7 chr13 76842662 76842992 -25030177 - AluSq SINE Alu 0 313 1 1807 124 21 59 chr13 76842992 76843134 -25030035 - THE1B LTR MaLR -179 185 39 245 121 48 84 chr13 76843137 76843220 -25029949 + (CATAT)n Simple_repeat Simple_repeat 4 83 0 646 343 54 30 chr13 76843597 76844117 -25029052 + L2 LINE L2 2752 3284 -29 3840 111 18 6 chr13 76844117 76844746 -25028423 - L1MA2 LINE L1 0 6304 5669 646 343 54 30 chr13 76844746 76844773 -25028396 + L2 LINE L2 3284 3309 -4 1806 235 60 18 chr13 76844960 76845458 -25027711 + LTR40a LTR ERVL 1 519 0 2512 105 68 21 chr13 76845537 76845965 -25027204 + LTR7 LTR ERV1 1 448 -2 18286 93 54 6 chr13 76845967 76848818 -25024351 + HERVH LTR ERV1 1 2987 -4726 787 138 41 0 chr13 76848812 76848957 -25024212 + HERVH LTR ERV1 3140 3290 -4423 * 2931 113 40 4 chr13 76848956 76849433 -25023736 + HERVH LTR ERV1 3500 3993 -3720 3945 145 22 1 chr13 76849435 76850084 -25023085 + HERVH LTR ERV1 4488 5149 -2564 1325 114 18 14 chr13 76850085 76850304 -25022865 + HERVH LTR ERV1 5600 5819 -1894 2328 93 45 13 chr13 76850304 76850682 -25022487 + HERVH LTR ERV1 7324 7713 0 2571 101 58 25 chr13 76850682 76851116 -25022053 + LTR7 LTR ERV1 1 448 -2 298 349 23 43 chr13 76851704 76851962 -25021207 - L2 LINE L2 -15 3298 3046 1535 201 8 64 chr13 76852081 76852102 -25021067 - MLT1B LTR MaLR 0 390 369 2286 165 57 5 chr13 76852102 76852509 -25020660 + MSTA LTR MaLR 1 428 0 1535 201 8 64 chr13 76852509 76852876 -25020293 - MLT1B LTR MaLR -21 369 24 234 240 27 0 chr13 76854080 76854155 -25019014 + L1ME LINE L1 5724 5800 -362 3502 55 0 7 chr13 76854546 76854997 -25018172 - LTR7 LTR ERV1 -2 448 1 2392 77 45 13 chr13 76854997 76855375 -25017794 - HERVH LTR ERV1 0 7713 7324 1266 126 28 0 chr13 76855375 76855589 -25017580 - HERVH LTR ERV1 -1894 5819 5600 4055 146 0 1 chr13 76855590 76856253 -25016916 - HERVH LTR ERV1 -2564 5149 4488 3107 115 4 6 chr13 76856255 76856758 -25016411 - HERVH LTR ERV1 -3720 3993 3492 958 107 7 0 chr13 76856748 76856898 -25016271 - HERVH LTR ERV1 -4423 3290 3140 * 15817 105 15 13 chr13 76856877 76859802 -25013367 - HERVH LTR ERV1 -4718 2995 1 3301 65 7 7 chr13 76859804 76860252 -25012917 - LTR7 LTR ERV1 -2 448 1 203 182 0 0 chr13 76860381 76860414 -25012755 - MIR SINE MIR -82 126 94 416 304 43 0 chr13 76860697 76860858 -25012311 + MIR SINE MIR 57 224 -38 273 271 127 0 chr13 76863322 76863440 -25009729 + L1ME LINE L1 5535 5667 -454 21 36 0 0 chr13 76863550 76863578 -25009591 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr13 76864270 76864305 -25008864 + AT_rich Low_complexity Low_complexity 1 35 0 266 286 0 0 chr13 76864843 76864906 -25008263 + (CA)n Simple_repeat Simple_repeat 1 63 0 196 406 32 19 chr13 76866885 76867040 -25006129 - L2 LINE L2 -14 3258 3102 275 226 0 0 chr13 76867836 76867889 -25005280 - MIR SINE MIR -129 133 81 297 280 87 27 chr13 76868254 76868404 -25004765 + MIR SINE MIR 83 241 -21 524 159 0 23 chr13 76868820 76868908 -25004261 + MER44D DNA MER2_type 3 358 -251 608 183 7 7 chr13 76869452 76869589 -25003580 + L1MA6 LINE L1 6162 6298 -2 290 100 43 14 chr13 76870944 76870960 -25002209 + (TA)n Simple_repeat Simple_repeat 2 16 -57 267 31 0 0 chr13 76870960 76870992 -25002177 + (CA)n Simple_repeat Simple_repeat 2 33 0 290 100 43 14 chr13 76870992 76871045 -25002124 + (TA)n Simple_repeat Simple_repeat 16 73 0 1078 221 107 65 chr13 76871062 76871446 -25001723 - MLT2D LTR ERVL -7 407 8 544 284 88 0 chr13 76872185 76872379 -25000790 + MER58A DNA MER1_type 1 211 -13 295 252 117 36 chr13 76872393 76872504 -25000665 - L2 LINE L2 -6 3307 3188 1605 167 83 6 chr13 76872555 76872698 -25000471 - L1MA9 LINE L1 0 6312 6181 180 0 0 0 chr13 76872698 76872718 -25000451 + (TG)n Simple_repeat Simple_repeat 1 20 0 1605 167 83 6 chr13 76872718 76872910 -25000259 - L1MA9 LINE L1 -131 6181 5951 1950 109 31 17 chr13 76872978 76873272 -24999897 + AluSx SINE Alu 1 298 -14 648 200 25 56 chr13 76874558 76874718 -24998451 - Tigger2 DNA MER2_type 0 2718 2564 * 1290 106 25 0 chr13 76874713 76874912 -24998257 - Tigger2 DNA MER2_type -2508 210 7 1751 180 3 13 chr13 76875625 76875931 -24997238 - AluJb SINE Alu -9 303 1 5240 156 28 5 chr13 76876164 76877086 -24996083 - L1MA6 LINE L1 -6 6294 5352 3898 175 15 14 chr13 76877088 76877888 -24995281 + L1MA6 LINE L1 4529 5329 -817 240 35 0 0 chr13 76879047 76879076 -24994093 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 750 225 212 25 chr13 76879078 76879314 -24993855 - AluSx SINE Alu -32 280 1 550 330 143 20 chr13 76879598 76879898 -24993271 + L2 LINE L2 96 432 -2882 277 372 67 12 chr13 76880666 76880830 -24992339 + L2 LINE L2 338 510 -2804 1706 166 3 20 chr13 76880836 76881137 -24992032 - MER1B DNA MER1_type 0 339 44 287 328 23 35 chr13 76881149 76881320 -24991849 + L2 LINE L2 525 693 -2621 735 286 77 4 chr13 76881341 76881575 -24991594 - MIR SINE MIR 0 262 12 222 329 154 25 chr13 76881592 76881872 -24991297 - L3 LINE CR1 -306 1271 956 756 298 42 4 chr13 76882603 76882841 -24990328 + MIR SINE MIR 10 256 -6 31 0 0 0 chr13 76882945 76882976 -24990193 + AT_rich Low_complexity Low_complexity 1 31 0 252 308 22 33 chr13 76885474 76885565 -24987604 - MER5B DNA MER1_type -7 171 82 21 71 0 0 chr13 76885834 76885876 -24987293 + AT_rich Low_complexity Low_complexity 1 42 0 225 47 70 0 chr13 76886368 76886411 -24986758 + (CA)n Simple_repeat Simple_repeat 1 46 0 687 158 44 0 chr13 76886805 76886919 -24986250 - FAM SINE Alu -55 130 12 2589 140 23 23 chr13 76887135 76887327 -24985842 + MSTA LTR MaLR 1 192 -236 1546 42 0 5 chr13 76887327 76887519 -24985650 + L1PA7 LINE L1 5960 6150 -4 2589 140 23 23 chr13 76887519 76887754 -24985415 + MSTA LTR MaLR 191 428 0 216 0 0 0 chr13 76887785 76887809 -24985360 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 318 0 0 chr13 76889456 76889522 -24983647 - MIR SINE MIR -3 259 194 186 133 0 0 chr13 76889761 76889791 -24983378 + (TAA)n Simple_repeat Simple_repeat 3 32 0 309 51 0 0 chr13 76890153 76890192 -24982977 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 247 35 12 chr13 76892263 76892348 -24980821 + GA-rich Low_complexity Low_complexity 3 89 0 25 0 0 0 chr13 76892823 76892848 -24980321 + AT_rich Low_complexity Low_complexity 1 25 0 229 266 63 77 chr13 76894361 76894504 -24978665 - MIR SINE MIR -64 198 58 1911 143 7 0 chr13 76894829 76895159 -24978010 + AluSx SINE Alu 1 332 0 2114 110 3 0 chr13 76898073 76898381 -24974788 - L1P LINE L1 -4254 1892 1584 * 12124 109 30 3 chr13 76898371 76900227 -24972942 + L1P3 LINE L1 4 1889 -4562 959 179 14 29 chr13 76902311 76902518 -24970651 - MER96B DNA MER1_type? -181 236 33 26 30 0 0 chr13 76903069 76903102 -24970067 + AT_rich Low_complexity Low_complexity 1 33 0 1823 154 50 28 chr13 76904226 76904589 -24968580 + THE1C LTR MaLR 1 371 -4 1792 185 9 6 chr13 76906210 76906540 -24966629 - L1PA16 LINE L1 -2 6164 5834 1147 157 105 16 chr13 76906520 76906768 -24966401 + L1PA16 LINE L1 5560 5829 -337 * 651 228 61 103 chr13 76907220 76907627 -24965542 - MER110A LTR ERV1 -19 472 98 21 0 0 0 chr13 76907900 76907921 -24965248 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 76907988 76908017 -24965152 + AT_rich Low_complexity Low_complexity 1 29 0 210 189 19 0 chr13 76908746 76908799 -24964370 + A-rich Low_complexity Low_complexity 5 58 0 590 242 0 0 chr13 76908870 76908990 -24964179 + FRAM SINE Alu 41 160 -16 1724 169 10 20 chr13 76909206 76909507 -24963662 + AluSx SINE Alu 1 298 -14 1914 176 115 3 chr13 76909582 76909957 -24963212 + MSTB LTR MaLR 9 425 -1 268 286 82 44 chr13 76910135 76910341 -24962828 + HAL1 LINE L1 1466 1679 -828 23 0 0 0 chr13 76910610 76910633 -24962536 + AT_rich Low_complexity Low_complexity 1 23 0 299 225 56 0 chr13 76911267 76911356 -24961813 + L1M4 LINE L1 2452 2545 -3601 955 267 65 10 chr13 76911356 76911648 -24961521 - L2 LINE L2 -1279 2035 1728 223 249 78 127 chr13 76911790 76912035 -24961134 - L2 LINE L2 -1606 1708 1476 1622 113 9 68 chr13 76912043 76912369 -24960800 + L1M2c LINE L1 1857 2163 -4626 1697 238 59 13 chr13 76912385 76912927 -24960242 - L1M4 LINE L1 -3097 3049 2483 1365 211 147 105 chr13 76913022 76913917 -24959252 - LTR1B LTR ERV1 0 1020 8 213 294 29 15 chr13 76914417 76914485 -24958684 - MIR SINE MIR -190 72 4 204 253 13 27 chr13 76914913 76914988 -24958181 + GA-rich Low_complexity Low_complexity 3 76 0 1725 185 3 31 chr13 76917139 76917458 -24955711 + AluJo SINE Alu 2 311 -1 236 265 83 30 chr13 76917593 76917725 -24955444 - MIR SINE MIR -13 249 111 26 93 0 0 chr13 76918053 76918128 -24955041 + AT_rich Low_complexity Low_complexity 1 75 0 25 51 0 0 chr13 76918267 76918306 -24954863 + AT_rich Low_complexity Low_complexity 1 39 0 244 183 0 28 chr13 76918330 76918401 -24954768 + (TATATG)n Simple_repeat Simple_repeat 1 69 0 4678 126 23 7 chr13 76918627 76919364 -24953805 - L1PA16 LINE L1 -9 6157 5409 25 51 0 0 chr13 76920338 76920377 -24952792 + AT_rich Low_complexity Low_complexity 1 39 0 392 357 102 40 chr13 76921355 76921983 -24951186 - L2 LINE L2 -574 2740 2074 496 287 41 28 chr13 76922034 76922392 -24950777 - MARNA DNA Mariner -74 512 91 1403 185 4 19 chr13 76922825 76923084 -24950085 + AluJo SINE Alu 32 286 -26 189 0 0 0 chr13 76923107 76923128 -24950041 + (TAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr13 76923136 76923158 -24950011 + AT_rich Low_complexity Low_complexity 1 22 0 317 287 115 57 chr13 76925207 76925538 -24947631 - MLT1I LTR MaLR 0 409 60 191 226 65 108 chr13 76925711 76925750 -24947419 - MIR SINE MIR -57 205 166 1624 114 3 123 chr13 76925750 76925922 -24947247 + AluJb SINE Alu 1 115 -187 1586 56 0 0 chr13 76925922 76926120 -24947049 + AluY SINE Alu 112 309 -2 1624 114 3 123 chr13 76926120 76926280 -24946889 + AluJb SINE Alu 115 293 -9 191 226 65 108 chr13 76926280 76926333 -24946836 - MIR SINE MIR -96 166 117 353 301 91 0 chr13 76926962 76927105 -24946064 + MIR SINE MIR 24 179 -83 21 71 0 0 chr13 76927790 76927832 -24945337 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr13 76928542 76928564 -24944605 + AT_rich Low_complexity Low_complexity 1 22 0 519 60 0 0 chr13 76928715 76928782 -24944387 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 0 0 0 chr13 76929379 76929402 -24943767 + AT_rich Low_complexity Low_complexity 1 23 0 37 23 0 0 chr13 76930819 76930863 -24942306 + AT_rich Low_complexity Low_complexity 1 44 0 279 322 112 39 chr13 76931466 76931671 -24941498 - MIR SINE MIR -38 224 5 1052 250 83 37 chr13 76931674 76931878 -24941291 + MER58B DNA MER1_type 1 227 -2193 2192 113 3 0 chr13 76931878 76932179 -24940990 - AluSx SINE Alu -10 302 1 1052 250 83 37 chr13 76932179 76932298 -24940871 + MER58B DNA MER1_type 227 339 -2 878 182 7 0 chr13 76932794 76932942 -24940227 - MER69A DNA AcHobo -11 166 18 29 28 0 0 chr13 76933152 76933188 -24939981 + AT_rich Low_complexity Low_complexity 1 36 0 2366 87 0 3 chr13 76936151 76936460 -24936709 - AluY SINE Alu -3 308 1 3824 139 3 0 chr13 76936708 76937299 -24935870 + L1PA14 LINE L1 5564 6156 -5 5455 89 23 1 chr13 76937316 76938091 -24935078 + L1PA8 LINE L1 5370 6161 -11 296 311 113 0 chr13 76938243 76938394 -24934775 + L2 LINE L2 1983 2150 -1164 2384 99 0 3 chr13 76938402 76938716 -24934453 - AluSq SINE Alu 0 313 1 2711 171 148 5 chr13 76938802 76939439 -24933730 - Tigger7 DNA MER2_type -5 2482 4 297 51 0 0 chr13 76939441 76939480 -24933689 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 0 0 0 chr13 76940274 76940301 -24932868 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 76940372 76940409 -24932760 + AT_rich Low_complexity Low_complexity 1 37 0 408 261 75 43 chr13 76940896 76941057 -24932112 - MLT1I LTR MaLR 0 409 244 26 0 0 0 chr13 76941275 76941301 -24931868 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr13 76941372 76941407 -24931762 + AT_rich Low_complexity Low_complexity 1 35 0 404 172 51 153 chr13 76941521 76941678 -24931491 - MLT1I LTR MaLR -255 154 14 714 55 0 0 chr13 76942008 76942099 -24931070 + (TTCTG)n Simple_repeat Simple_repeat 2 92 0 1169 305 124 19 chr13 76942915 76943505 -24929664 + MLT2F LTR ERVL 5 656 -7 235 217 11 22 chr13 76944416 76944508 -24928661 + (CATATA)n Simple_repeat Simple_repeat 3 93 0 37 62 0 0 chr13 76944818 76944883 -24928286 + AT_rich Low_complexity Low_complexity 1 65 0 232 241 19 0 chr13 76946195 76946249 -24926920 + MLT1L LTR MaLR 120 174 -441 254 237 44 53 chr13 76946410 76946524 -24926645 - L2 LINE L2 -106 3207 3095 * 2570 319 98 27 chr13 76946509 76947934 -24925235 - L2 LINE L2 -338 2976 1451 233 340 100 0 chr13 76948050 76948150 -24925019 - L2 LINE L2 0 3272 3163 262 280 100 0 chr13 76948619 76948719 -24924450 - L2 LINE L2 -2 3311 3202 21 57 0 0 chr13 76949298 76949333 -24923836 + AT_rich Low_complexity Low_complexity 1 35 0 1994 171 0 0 chr13 76950493 76950802 -24922367 - AluSx SINE Alu -3 309 1 269 122 54 0 chr13 76950846 76950920 -24922249 + (TA)n Simple_repeat Simple_repeat 2 79 0 302 242 33 44 chr13 76950920 76951011 -24922158 - L1MC4 LINE L1 -1339 6703 6614 467 98 43 0 chr13 76951019 76951111 -24922058 + (TA)n Simple_repeat Simple_repeat 1 96 0 313 206 0 29 chr13 76951338 76951406 -24921763 - MSTA LTR MaLR -42 386 321 431 189 31 0 chr13 76951406 76951533 -24921636 + (TA)n Simple_repeat Simple_repeat 2 132 0 189 0 0 0 chr13 76951533 76951554 -24921615 + (TG)n Simple_repeat Simple_repeat 2 22 0 285 29 0 0 chr13 76951554 76951588 -24921581 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2112 161 30 11 chr13 76951608 76951981 -24921188 + MSTA LTR MaLR 7 386 -42 21147 141 19 8 chr13 76952326 76955641 -24917528 + L1M1 LINE L1 12 3364 -4201 1445 136 5 9 chr13 77005839 77006052 -24867117 + AluSg/x SINE Alu 75 286 -26 183 100 0 0 chr13 77006056 77006086 -24867083 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 24 32 0 0 chr13 77006793 77006824 -24866345 + AT_rich Low_complexity Low_complexity 1 31 0 732 137 82 0 chr13 77006984 77007130 -24866039 + L1MA8 LINE L1 6131 6288 -3 2225 103 0 3 chr13 77008379 77008669 -24864500 + AluSg SINE Alu 1 289 -21 804 301 101 18 chr13 77009054 77009440 -24863729 - L2 LINE L2 -7 3306 2889 1266 325 53 59 chr13 77009604 77010483 -24862686 - L2 LINE L2 -411 2903 2030 1514 185 20 36 chr13 77010483 77010785 -24862384 + AluJo SINE Alu 1 297 -15 327 49 0 0 chr13 77011413 77011454 -24861715 + (CA)n Simple_repeat Simple_repeat 1 41 0 1085 223 9 5 chr13 77011862 77012082 -24861087 + MER58A DNA MER1_type 2 222 -2 1192 190 61 78 chr13 77013079 77013490 -24859679 + LTR37A LTR ERV1 19 422 -4 2429 75 0 3 chr13 77013504 77013810 -24859359 - AluY SINE Alu -6 305 1 272 189 38 0 chr13 77014895 77014948 -24858221 + MER50 LTR ERV1 1 55 -679 * 435 202 176 0 chr13 77014946 77015065 -24858104 + MER58A DNA MER1_type 28 167 0 1694 154 0 86 chr13 77016324 77016648 -24856521 - AluJb SINE Alu -16 296 1 23 0 0 0 chr13 77016760 77016783 -24856386 + AT_rich Low_complexity Low_complexity 1 23 0 4135 88 0 5 chr13 77016970 77017546 -24855623 + L1PA14 LINE L1 5584 6156 -5 21 0 0 0 chr13 77017607 77017628 -24855541 + AT_rich Low_complexity Low_complexity 1 21 0 200 405 0 0 chr13 77020354 77020433 -24852736 + L2 LINE L2 3108 3186 -86 872 217 10 56 chr13 77020437 77020587 -24852582 + MER5A DNA MER1_type 1 141 -48 7070 52 11 1 chr13 77020587 77021942 -24851227 + L1PA5 LINE L1 4790 6153 -1 872 217 10 56 chr13 77021942 77021989 -24851180 + MER5A DNA MER1_type 141 189 0 236 305 12 12 chr13 77022411 77022493 -24850676 + L2 LINE L2 3232 3313 0 2167 121 3 3 chr13 77022807 77023112 -24850057 + AluSc SINE Alu 3 307 -2 768 296 117 53 chr13 77023953 77024724 -24848445 + L2 LINE L2 2186 3001 -271 1000 286 78 39 chr13 77024750 77025292 -24847877 + MLT1G1 LTR MaLR 3 569 -21 259 363 0 0 chr13 77025394 77025474 -24847695 + L2 LINE L2 3134 3213 -59 225 0 0 0 chr13 77025803 77025828 -24847341 + (A)n Simple_repeat Simple_repeat 1 25 0 1984 191 21 41 chr13 77028726 77029209 -24843960 + MER31A LTR ERV1 11 483 -2 528 126 0 0 chr13 77029319 77029406 -24843763 + (TCCCC)n Simple_repeat Simple_repeat 4 90 0 213 222 19 0 chr13 77029406 77029460 -24843709 + CT-rich Low_complexity Low_complexity 2 56 0 964 273 50 45 chr13 77029467 77029848 -24843321 + MLT1E LTR MaLR 206 588 -5 798 249 29 5 chr13 77030604 77030813 -24842356 + MER58C DNA MER1_type 1 214 -1 1351 175 37 84 chr13 77030814 77031219 -24841950 + LTR37A LTR ERV1 40 425 -1 1674 156 55 30 chr13 77031339 77031705 -24841464 - THE1C LTR MaLR 0 375 1 3304 33 2 0 chr13 77032111 77032509 -24840660 - L1PA4 LINE L1 -2 6153 5755 23 0 0 0 chr13 77033774 77033797 -24839372 + AT_rich Low_complexity Low_complexity 1 23 0 271 197 0 70 chr13 77035233 77035304 -24837865 + MIR SINE MIR 109 174 -88 218 357 29 41 chr13 77035870 77036051 -24837118 + MIR3 SINE MIR 9 189 -67 335 305 66 61 chr13 77036997 77037194 -24835975 - MIR SINE MIR -8 254 57 21 36 0 0 chr13 77037392 77037420 -24835749 + AT_rich Low_complexity Low_complexity 1 28 0 468 0 0 0 chr13 77038827 77038879 -24834290 + (A)n Simple_repeat Simple_repeat 1 52 0 225 242 0 48 chr13 77039100 77039162 -24834007 - MER101 LTR ERV1 -43 431 373 1129 204 23 50 chr13 77039240 77039539 -24833630 - MER101B LTR ERV1 -271 299 9 461 277 106 32 chr13 77039556 77039739 -24833430 - LTR49-int LTR ERV1 -1026 7094 6897 1713 107 38 49 chr13 77039739 77040002 -24833167 + AluSx SINE Alu 1 260 -52 1058 84 17 17 chr13 77040015 77040193 -24832976 + (GGAAA)n Simple_repeat Simple_repeat 3 180 0 291 221 0 32 chr13 77040382 77040477 -24832692 - LTR49-int LTR ERV1 -3138 1798 1707 467 200 27 9 chr13 77040586 77040696 -24832473 - LTR49-int LTR ERV1 -2872 3459 3348 428 160 27 0 chr13 77040747 77040822 -24832347 - LTR49-int LTR ERV1 -2991 3340 3264 988 181 50 65 chr13 77040874 77041356 -24831813 - LTR49-int LTR ERV1 -2966 2980 1260 2939 96 54 0 chr13 77041363 77041811 -24831358 + L1PA14 LINE L1 5679 6150 -11 285 296 24 24 chr13 77041925 77042050 -24831119 - MIR SINE MIR 0 262 138 320 331 31 25 chr13 77042238 77042401 -24830768 - MER34C LTR ERV1 -177 408 245 1584 234 93 63 chr13 77042405 77043173 -24829996 - LTR49-int LTR ERV1 -3688 3422 742 1465 181 25 14 chr13 77043225 77043507 -24829662 - LTR49-int LTR ERV1 -4675 1656 1372 326 208 10 30 chr13 77043636 77043737 -24829432 - LTR49-int LTR ERV1 -4949 1382 1284 280 290 0 0 chr13 77043741 77043803 -24829366 - tRNA-Glu-GAG tRNA tRNA -3 72 11 2154 106 7 0 chr13 77043811 77044103 -24829066 - AluY SINE Alu -17 294 1 1462 217 24 10 chr13 77044169 77044200 -24828969 - LTR49-int LTR ERV1 -5488 843 814 369 0 0 0 chr13 77044200 77044241 -24828928 + (CA)n Simple_repeat Simple_repeat 2 42 0 1462 217 24 10 chr13 77044241 77044499 -24828670 - LTR49-int LTR ERV1 -5517 814 550 978 167 4 32 chr13 77044524 77044777 -24828392 - LTR49-int LTR ERV1 -4617 1329 1070 1854 153 10 7 chr13 77044777 77045072 -24828097 + AluSx SINE Alu 1 296 -16 978 167 4 32 chr13 77045072 77045100 -24828069 - LTR49-int LTR ERV1 -4876 1070 154 485 262 16 0 chr13 77045198 77045324 -24827845 - LTR49 LTR ERV1 0 595 468 2157 117 0 0 chr13 77045645 77045964 -24827205 - AluSx SINE Alu 0 319 1 1363 176 49 72 chr13 77046678 77046984 -24826185 + AluJo SINE Alu 1 299 -13 910 187 82 16 chr13 77047254 77047436 -24825733 - MER101B LTR ERV1 -342 228 35 336 265 108 30 chr13 77047531 77047697 -24825472 + L1M4 LINE L1 2883 3061 -3085 477 258 75 56 chr13 77047797 77048010 -24825159 - MER21B LTR ERV1 -129 734 518 643 112 0 10 chr13 77048019 77048117 -24825052 + MER4A LTR ERV1 1 97 -567 * 1514 139 170 92 chr13 77048114 77048434 -24824735 + MER4A LTR ERV1 257 609 -55 3501 127 78 21 chr13 77048434 77049015 -24824154 + LTR18B LTR ERVL 1 614 0 1514 139 170 92 chr13 77049015 77049053 -24824116 + MER4A LTR ERV1 609 643 -21 300 248 115 76 chr13 77049088 77049242 -24823927 - MER21B LTR ERV1 -428 435 276 1554 203 27 97 chr13 77049242 77049946 -24823223 - LTR9 LTR ERV1 0 612 1 663 230 65 42 chr13 77049950 77050167 -24823002 - MER21B LTR ERV1 -597 266 45 410 309 123 66 chr13 77050415 77050748 -24822421 - LTR33 LTR ERVL -169 352 1 304 285 85 48 chr13 77050748 77051018 -24822151 - L1P LINE L1 -2197 3949 3670 28 48 0 0 chr13 77051395 77051437 -24821732 + AT_rich Low_complexity Low_complexity 1 42 0 2316 148 3 6 chr13 77053829 77054194 -24818975 + THE1B LTR MaLR 1 364 0 1738 230 63 71 chr13 77054242 77054750 -24818419 - MLT1F1 LTR MaLR 0 567 64 785 258 113 27 chr13 77054838 77055059 -24818110 + MLT1E LTR MaLR 1 240 -353 872 210 195 0 chr13 77055090 77055295 -24817874 + MLT1E LTR MaLR 349 593 0 242 219 31 62 chr13 77055353 77055417 -24817752 + MIR SINE MIR 89 150 -58 2651 91 6 0 chr13 77055849 77056202 -24816967 - THE1A LTR MaLR 0 355 1 474 33 0 0 chr13 77056330 77056390 -24816779 + (TG)n Simple_repeat Simple_repeat 1 60 0 479 312 65 19 chr13 77056448 77056663 -24816506 + MLT1H LTR MaLR 39 263 -286 251 286 84 59 chr13 77056798 77056917 -24816252 + MLT1H LTR MaLR 428 549 0 1042 238 4 4 chr13 77057262 77057514 -24815655 - L1MDa LINE L1 -3680 2860 2609 622 217 200 0 chr13 77057624 77057799 -24815370 - MER2 DNA MER2_type -135 210 1 699 183 32 19 chr13 77057800 77058006 -24815163 - L1MDa LINE L1 -3924 2616 2407 533 241 121 0 chr13 77058007 77058123 -24815046 + MLT1E LTR MaLR 355 484 -109 301 250 0 0 chr13 77058161 77058233 -24814936 - L1MC/D LINE L1 -1986 5822 5751 457 316 36 28 chr13 77059843 77060093 -24813076 + MIR SINE MIR 11 262 0 26 64 0 0 chr13 77061507 77061554 -24811615 + AT_rich Low_complexity Low_complexity 1 47 0 225 0 0 0 chr13 77062111 77062136 -24811033 + (TTG)n Simple_repeat Simple_repeat 3 27 0 249 338 125 24 chr13 77062306 77062682 -24810487 + L2 LINE L2 2393 2806 -508 2400 85 3 0 chr13 77062686 77062993 -24810176 + AluY SINE Alu 1 308 -3 1074 204 9 14 chr13 77063110 77063330 -24809839 - MER20 DNA MER1_type 0 219 1 324 83 0 0 chr13 77063400 77063448 -24809721 + (TC)n Simple_repeat Simple_repeat 1 48 0 353 330 71 59 chr13 77063451 77063690 -24809479 - MLT1J LTR MaLR -95 416 175 198 0 0 0 chr13 77063894 77063916 -24809253 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 199 287 64 83 chr13 77064726 77064883 -24808286 + L2 LINE L2 3114 3267 -5 275 315 134 8 chr13 77065061 77065188 -24807981 - MIR SINE MIR -71 191 49 185 264 38 0 chr13 77067314 77067367 -24805802 + MIR SINE MIR 86 140 -122 1155 219 127 5 chr13 77067448 77067819 -24805350 - MER110 LTR ERV1 -24 467 5 435 309 72 70 chr13 77068904 77069335 -24803834 + L1ME4a LINE L1 5637 6068 -53 282 221 145 28 chr13 77070011 77070156 -24803013 + LTR33 LTR ERVL 326 487 -34 1305 60 0 0 chr13 77070156 77070323 -24802846 + L1MA2 LINE L1 6138 6304 0 27 0 0 0 chr13 77070323 77070350 -24802819 + AT_rich Low_complexity Low_complexity 1 27 0 474 283 81 79 chr13 77070598 77071005 -24802164 + LTR16C LTR ERVL 84 491 0 250 324 41 24 chr13 77071558 77071683 -24801486 - MIR3 SINE MIR -50 158 23 670 262 75 19 chr13 77073040 77073254 -24799915 + MIR SINE MIR 27 252 -10 218 222 0 22 chr13 77073272 77073317 -24799852 + L2 LINE L2 3226 3269 -3 1606 88 0 0 chr13 77073635 77073840 -24799329 + AluSc SINE Alu 4 208 -101 2492 54 0 0 chr13 77073840 77074136 -24799033 + AluY SINE Alu 1 297 -14 805 92 0 0 chr13 77074138 77074247 -24798922 + AluSg/x SINE Alu 192 300 -9 393 268 10 0 chr13 77075504 77075625 -24797544 + MER20B DNA MER1_type 87 212 -7 2472 71 0 0 chr13 77075768 77076076 -24797093 - AluSq SINE Alu -5 308 1 1491 221 97 6 chr13 77076101 77076511 -24796658 - L1ME1 LINE L1 -8 6158 5718 226 348 93 8 chr13 77076689 77076807 -24796362 + L2 LINE L2 3141 3268 -4 363 89 0 0 chr13 77076967 77077023 -24796146 + (CA)n Simple_repeat Simple_repeat 2 57 0 200 250 0 78 chr13 77077583 77077647 -24795522 - MIR3 SINE MIR -39 169 111 251 333 0 62 chr13 77077654 77077750 -24795419 + MIR SINE MIR 34 123 -85 200 286 16 63 chr13 77077923 77077986 -24795183 + MIR SINE MIR 30 89 -119 241 341 41 15 chr13 77078079 77078210 -24794959 - MIR SINE MIR -65 143 20 438 243 76 0 chr13 77078573 77078717 -24794452 - Charlie2 DNA MER1_type -541 2321 2167 316 188 30 40 chr13 77078747 77078848 -24794321 + Charlie2 DNA MER1_type 2222 2321 -541 1661 232 66 31 chr13 77078905 77079224 -24793945 - Charlie2a DNA MER1_type -767 2095 1748 2383 206 38 29 chr13 77079224 77079269 -24793900 + MER68 LTR ERV1 1 44 -518 2162 104 24 0 chr13 77079269 77079567 -24793602 + AluSx SINE Alu 1 305 -7 2383 206 38 29 chr13 77079567 77080078 -24793091 + MER68 LTR ERV1 44 562 0 1661 232 66 31 chr13 77080078 77080306 -24792863 - Charlie2a DNA MER1_type -1114 1748 1529 2321 245 105 42 chr13 77080318 77081615 -24791554 - Charlie2a DNA MER1_type -1442 1420 2 27 0 0 0 chr13 77082287 77082314 -24790855 + AT_rich Low_complexity Low_complexity 1 27 0 274 71 0 54 chr13 77082636 77082692 -24790477 + (GAAAA)n Simple_repeat Simple_repeat 1 53 0 2373 94 3 0 chr13 77082822 77083129 -24790040 - AluSp SINE Alu -5 308 1 244 238 0 16 chr13 77084298 77084361 -24788808 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 4966 139 28 65 chr13 77085785 77085861 -24787308 + L1MC1 LINE L1 5327 5404 -929 2342 79 0 13 chr13 77085861 77086176 -24786993 + AluY SINE Alu 1 311 0 4966 139 28 65 chr13 77086176 77087140 -24786029 + L1MC1 LINE L1 5404 6328 -5 895 330 28 25 chr13 77087735 77088448 -24784721 + L1MEc LINE L1 1028 1742 -4654 1162 166 26 34 chr13 77088573 77088838 -24784331 + L1MC3 LINE L1 7516 7778 -7 412 179 168 0 chr13 77089056 77089151 -24784018 + MER3 DNA MER1_type 83 193 -16 359 289 38 34 chr13 77089165 77089400 -24783769 + L1MEc LINE L1 2055 2290 -4106 23 33 0 0 chr13 77089422 77089452 -24783717 + AT_rich Low_complexity Low_complexity 1 30 0 354 254 127 68 chr13 77089997 77090320 -24782849 - MLT1I LTR MaLR -8 401 60 316 327 9 0 chr13 77090523 77090636 -24782533 + MER117 DNA MER1_type 53 166 -31 399 300 132 57 chr13 77090717 77091140 -24782029 + MLT1H LTR MaLR 95 549 0 23 78 0 0 chr13 77091397 77091448 -24781721 + AT_rich Low_complexity Low_complexity 1 51 0 26 30 0 0 chr13 77091484 77091517 -24781652 + AT_rich Low_complexity Low_complexity 1 33 0 1824 172 0 0 chr13 77091537 77091863 -24781306 - AluJo SINE Alu 0 326 1 1951 167 26 35 chr13 77091996 77092151 -24781018 + MER7A DNA MER2_type 4 159 -2879 1396 102 40 35 chr13 77092151 77092377 -24780792 + MER30 DNA MER1_type 2 228 -2 1951 167 26 35 chr13 77092377 77092568 -24780601 + MER7A DNA MER2_type 159 345 -1 466 362 18 6 chr13 77092757 77092920 -24780249 - MER5B DNA MER1_type -10 168 4 225 224 0 0 chr13 77093555 77093613 -24779556 + A-rich Low_complexity Low_complexity 1 58 0 1960 132 14 0 chr13 77095719 77095836 -24777333 + AluSq SINE Alu 3 117 -196 270 0 0 0 chr13 77095836 77095866 -24777303 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1960 132 14 0 chr13 77095866 77096036 -24777133 + AluSq SINE Alu 117 294 -19 1106 301 87 67 chr13 77097902 77098755 -24774414 - L2 LINE L2 -292 2980 2108 279 0 0 0 chr13 77099469 77099500 -24773669 + (CA)n Simple_repeat Simple_repeat 2 32 0 287 163 43 11 chr13 77100264 77100356 -24772813 + (TA)n Simple_repeat Simple_repeat 2 96 0 25 31 0 0 chr13 77101969 77102001 -24771168 + AT_rich Low_complexity Low_complexity 1 32 0 383 123 0 27 chr13 77102494 77102567 -24770602 + (GGAA)n Simple_repeat Simple_repeat 3 73 0 1364 269 67 0 chr13 77102640 77103042 -24770127 - MER63B DNA MER1_type -1 435 7 1258 270 70 32 chr13 77103866 77104577 -24768592 - HsTC2a DNA MER2_type -2 742 5 602 286 41 15 chr13 77104921 77105117 -24768052 - MER46C DNA MER2_type -1 337 137 859 318 43 6 chr13 77105125 77105452 -24767717 - MER93a LTR ERV1 -3 399 61 225 250 135 39 chr13 77105591 77105695 -24767474 - MER46C DNA MER2_type -221 117 4 668 323 116 46 chr13 77105876 77106741 -24766428 + L2 LINE L2 2353 3296 -17 243 0 0 0 chr13 77107022 77107049 -24766120 + (TG)n Simple_repeat Simple_repeat 2 28 0 387 0 0 0 chr13 77107057 77107100 -24766069 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1549 158 60 3 chr13 77108152 77108468 -24764701 - L1MA8 LINE L1 -3 6288 5955 202 290 221 41 chr13 77109201 77109346 -24763823 - MIR SINE MIR -72 190 20 1581 151 15 15 chr13 77109369 77109674 -24763495 + AluJb SINE Alu 11 315 0 202 285 35 27 chr13 77110151 77110301 -24762868 + MIR3 SINE MIR 13 236 -26 2248 102 0 13 chr13 77111732 77112045 -24761124 - AluSq SINE Alu 0 313 5 295 244 198 0 chr13 77112097 77112183 -24760986 - MER5A DNA MER1_type -83 106 4 2148 98 75 23 chr13 77112709 77113055 -24760114 - THE1B LTR MaLR 0 364 1 766 195 0 82 chr13 77113463 77113658 -24759511 + MLT1D LTR MaLR 1 179 -447 509 181 0 0 chr13 77113666 77113749 -24759420 - AluJ/FLAM SINE Alu -227 85 3 1197 180 92 33 chr13 77114367 77114507 -24758662 + MLT1D LTR MaLR 181 311 -194 3095 113 81 14 chr13 77114507 77115001 -24758168 - MER1A DNA MER1_type 0 527 1 1197 180 92 33 chr13 77115001 77115165 -24758004 + MLT1D LTR MaLR 311 503 -2 694 277 56 43 chr13 77115883 77116114 -24757055 - MIR SINE MIR -5 257 24 194 354 94 0 chr13 77116229 77116356 -24756813 + L3 LINE CR1 1426 1564 -13 228 185 19 0 chr13 77116612 77116666 -24756503 + T-rich Low_complexity Low_complexity 2 56 0 22 35 0 0 chr13 77116877 77116906 -24756263 + AT_rich Low_complexity Low_complexity 1 29 0 186 103 0 0 chr13 77117392 77117421 -24755748 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr13 77121350 77121371 -24751798 + AT_rich Low_complexity Low_complexity 1 21 0 528 247 56 45 chr13 77121623 77121801 -24751368 - MER20 DNA MER1_type -39 180 1 752 165 18 49 chr13 77121856 77122020 -24751149 - MLT2D LTR ERVL 0 414 256 370 317 161 55 chr13 77122036 77122433 -24750736 + L2 LINE L2 2834 3272 0 647 101 0 10 chr13 77122772 77122871 -24750298 + MER4A LTR ERV1 1 98 -566 1468 123 180 79 chr13 77122871 77123238 -24749931 + MER4A LTR ERV1 261 664 0 597 255 23 26 chr13 77123243 77123446 -24749723 + LTR41 LTR ERVL 1 235 -560 238 249 91 87 chr13 77123617 77123870 -24749299 + LTR41 LTR ERVL 510 763 -10 212 229 0 0 chr13 77125189 77125237 -24747932 + L2 LINE L2 3262 3309 -4 21 0 0 0 chr13 77127470 77127491 -24745678 + AT_rich Low_complexity Low_complexity 1 21 0 1456 163 62 31 chr13 77128591 77128879 -24744290 + AluJb SINE Alu 6 302 -10 451 324 79 19 chr13 77129266 77130012 -24743157 + L1ME2 LINE L1 1027 1817 -4579 332 255 81 67 chr13 77130251 77130400 -24742769 + L1ME2 LINE L1 2111 2261 -4135 1226 260 122 19 chr13 77130401 77130975 -24742194 + L1ME2 LINE L1 5601 6233 0 360 246 60 26 chr13 77131009 77131241 -24741928 + L1MEc LINE L1 2217 2456 -3759 2005 129 34 7 chr13 77131283 77131577 -24741592 + AluSx SINE Alu 1 302 -10 309 51 0 0 chr13 77131663 77131679 -24741490 + (CA)n Simple_repeat Simple_repeat 1 55 0 309 51 0 0 chr13 77131679 77131718 -24741451 + (CA)n Simple_repeat Simple_repeat 2 40 0 2101 100 0 0 chr13 77131742 77132012 -24741157 - AluSg SINE Alu -1 309 40 447 305 29 32 chr13 77132056 77132220 -24740949 + L1MEc LINE L1 2602 2765 -3450 1747 131 100 29 chr13 77132220 77132401 -24740768 + THE1C LTR MaLR 1 168 -207 381 22 0 0 chr13 77132401 77132447 -24740722 + (TC)n Simple_repeat Simple_repeat 1 46 0 1747 131 100 29 chr13 77132447 77132615 -24740554 + THE1C LTR MaLR 168 375 0 447 305 29 32 chr13 77132615 77132791 -24740378 + L1MEc LINE L1 2765 2941 -3274 1020 260 93 49 chr13 77132805 77133410 -24739759 + L1ME3A LINE L1 5515 6146 -24 516 225 0 16 chr13 77135199 77135328 -24737841 + L1MC/D LINE L1 5592 5718 -641 23 33 0 0 chr13 77135601 77135631 -24737538 + AT_rich Low_complexity Low_complexity 1 30 0 214 315 9 65 chr13 77135636 77135744 -24737425 - L2 LINE L2 -46 3226 3125 198 259 35 0 chr13 77138185 77138243 -24734926 + MIR SINE MIR 196 255 -7 21 0 0 0 chr13 77138364 77138385 -24734784 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 77140780 77140808 -24732361 + AT_rich Low_complexity Low_complexity 1 28 0 203 156 0 0 chr13 77141072 77141104 -24732065 + (CA)n Simple_repeat Simple_repeat 1 32 0 3247 186 83 40 chr13 77142094 77143091 -24730078 + L1MB5 LINE L1 4958 6018 -156 2861 122 17 0 chr13 77143091 77143510 -24729659 + MSTB LTR MaLR 1 426 0 3247 186 83 40 chr13 77143510 77143675 -24729494 + L1MB5 LINE L1 6018 6174 0 273 213 29 96 chr13 77147970 77148106 -24725063 - LTR67 LTR ERVL -3 554 428 382 368 78 9 chr13 77148622 77148853 -24724316 + MIR SINE MIR 16 262 0 448 274 8 8 chr13 77149250 77149367 -24723802 + MIR SINE MIR 31 147 -115 267 282 13 26 chr13 77149757 77149835 -24723334 + MER5B DNA MER1_type 4 80 -98 35 0 0 0 chr13 77149863 77149898 -24723271 + AT_rich Low_complexity Low_complexity 1 35 0 198 345 0 12 chr13 77150047 77150131 -24723038 - L3b LINE CR1 -172 1411 1329 191 293 85 0 chr13 77150602 77150684 -24722485 + MIR SINE MIR 173 261 -1 526 267 37 0 chr13 77150696 77150831 -24722338 - MIR SINE MIR -76 186 47 561 150 158 0 chr13 77152810 77152930 -24720239 + FLAM_C SINE Alu 1 139 -4 277 225 20 126 chr13 77153558 77153709 -24719460 + MLT1J2 LTR MaLR 87 221 -229 1677 129 120 23 chr13 77153759 77154101 -24719068 - THE1C LTR MaLR 0 375 1 633 240 0 0 chr13 77154710 77154885 -24718284 + (CA)n Simple_repeat Simple_repeat 2 176 0 230 184 0 0 chr13 77154890 77154928 -24718241 + (TA)n Simple_repeat Simple_repeat 1 38 0 231 261 20 161 chr13 77156052 77156106 -24717063 + MER5B DNA MER1_type 5 65 -113 2595 37 0 43 chr13 77156106 77156431 -24716738 - AluY SINE Alu 0 311 1 231 261 20 161 chr13 77156431 77156575 -24716594 + MER5B DNA MER1_type 65 175 -3 1024 167 27 11 chr13 77156585 77156771 -24716398 + MER5A DNA MER1_type 1 189 0 237 292 14 0 chr13 77157857 77157929 -24715240 + CT-rich Low_complexity Low_complexity 1 73 0 372 103 0 0 chr13 77158300 77158358 -24714811 + (TA)n Simple_repeat Simple_repeat 2 59 0 1168 15 0 0 chr13 77158358 77158491 -24714678 - L1PA5 LINE L1 -15 6139 6007 240 35 0 0 chr13 77159099 77159128 -24714041 + (TG)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 77159180 77159210 -24713959 + AT_rich Low_complexity Low_complexity 1 30 0 1112 180 0 0 chr13 77159330 77159513 -24713656 + MER5A DNA MER1_type 7 189 0 306 87 0 0 chr13 77159612 77159658 -24713511 + MER58 DNA MER1_type 2360 2405 -15 208 436 74 0 chr13 77160035 77160184 -24712985 + L2 LINE L2 3089 3248 -24 1303 220 18 49 chr13 77161080 77161292 -24711877 - MLT1A2 LTR MaLR 0 374 178 2193 119 0 3 chr13 77161292 77161587 -24711582 - AluSq SINE Alu -19 294 1 1303 220 18 49 chr13 77161587 77161760 -24711409 - MLT1A2 LTR MaLR -196 178 1 2132 123 7 0 chr13 77162155 77162447 -24710722 - AluSx SINE Alu -18 294 1 751 310 86 33 chr13 77163312 77163731 -24709438 - LTR33A LTR ERVL -80 443 3 1554 226 53 106 chr13 77164208 77164756 -24708413 + LTR40a LTR ERVL 1 519 0 353 258 170 13 chr13 77166299 77166458 -24706711 + MIR SINE MIR 79 262 0 744 232 12 6 chr13 77167269 77167433 -24705736 - MIR SINE MIR -34 228 64 915 205 0 6 chr13 77168366 77168532 -24704637 + FRAM SINE Alu 1 165 -1 29 70 0 0 chr13 77168784 77168841 -24704328 + AT_rich Low_complexity Low_complexity 1 57 0 2246 119 0 0 chr13 77168895 77169205 -24703964 + AluSx SINE Alu 1 310 -2 253 280 229 25 chr13 77171239 77171396 -24701773 + MIR SINE MIR 52 240 -22 241 341 11 66 chr13 77171505 77171687 -24701482 + L2 LINE L2 2918 3089 -183 263 290 0 0 chr13 77171839 77171901 -24701268 + GA-rich Low_complexity Low_complexity 1 62 0 1995 148 7 0 chr13 77172129 77172420 -24700749 - AluSx SINE Alu -19 293 1 919 271 22 19 chr13 77172943 77173212 -24699957 - LTR40a LTR ERVL 0 519 250 1028 125 27 0 chr13 77173247 77173431 -24699738 - L1MA4A LINE L1 -11 6292 6104 2223 103 30 0 chr13 77173458 77173759 -24699410 - AluSg SINE Alu 0 310 1 813 145 0 0 chr13 77173759 77173883 -24699286 - L1MA4A LINE L1 -566 5737 5614 1727 167 31 14 chr13 77173901 77174195 -24698974 - AluJb SINE Alu -13 299 1 321 309 32 4 chr13 77175044 77175154 -24698015 + MIR SINE MIR 40 149 -70 1002 213 31 108 chr13 77175225 77175430 -24697739 + MLT1H LTR MaLR 73 245 -304 722 246 103 5 chr13 77175430 77175633 -24697536 - MER58A DNA MER1_type 0 224 2 1002 213 31 108 chr13 77175633 77175751 -24697418 + MLT1H LTR MaLR 245 371 -178 648 268 173 54 chr13 77175885 77176254 -24696915 + LTR16A1 LTR ERVL 32 444 -13 1981 190 80 0 chr13 77176599 77176999 -24696170 + MSTB1 LTR MaLR 1 432 0 34 79 0 0 chr13 77179189 77179265 -24693904 + AT_rich Low_complexity Low_complexity 1 76 0 2414 177 20 55 chr13 77179334 77179731 -24693438 - L1MB3 LINE L1 -4 6179 5805 483 18 0 0 chr13 77179731 77179787 -24693382 + (TG)n Simple_repeat Simple_repeat 1 56 0 2414 177 20 55 chr13 77179787 77179931 -24693238 - L1MB3 LINE L1 -378 5805 5657 503 260 18 57 chr13 77179954 77180181 -24692988 - L1MA9 LINE L1 -38 6274 6057 3400 189 41 15 chr13 77180184 77180916 -24692253 + L1MA9 LINE L1 5280 6030 -282 1997 133 3 7 chr13 77181652 77181953 -24691216 - AluSx SINE Alu -12 300 1 350 313 32 83 chr13 77182388 77182605 -24690564 + MIR SINE MIR 26 231 -31 1523 243 61 42 chr13 77182672 77183166 -24690003 - MLT1D LTR MaLR 0 505 3 289 291 45 36 chr13 77184242 77184349 -24688820 + MIR SINE MIR 38 145 -117 408 278 100 66 chr13 77184349 77184590 -24688579 + MIR SINE MIR 1 249 -13 636 149 9 9 chr13 77184673 77184780 -24688389 + MLT1A1 LTR MaLR 1 107 -258 270 294 185 0 chr13 77185852 77185944 -24687225 - L2 LINE L2 -25 3247 3139 191 317 54 38 chr13 77186183 77186369 -24686800 + L2 LINE L2 2250 2438 -876 2076 136 37 11 chr13 77186892 77187244 -24685925 + MER46B DNA MER2_type 1 236 0 471 252 52 15 chr13 77187291 77187426 -24685743 + MIR SINE MIR 58 197 -65 1558 304 65 45 chr13 77187587 77188761 -24684408 + L1MEd LINE L1 12 1208 -4911 597 125 25 0 chr13 77188814 77188934 -24684235 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 256 284 11 0 chr13 77188961 77189049 -24684120 + HAL1 LINE L1 1429 1517 -990 1181 28 49 0 chr13 77190630 77190811 -24682358 - AluY SINE Alu 0 323 136 551 259 75 47 chr13 77191051 77191263 -24681906 - MIR SINE MIR 0 262 45 297 151 0 0 chr13 77191288 77191341 -24681828 + (TG)n Simple_repeat Simple_repeat 2 54 0 790 188 41 0 chr13 77191348 77191518 -24681651 - L1MB4 LINE L1 -23 6157 5981 1039 297 76 41 chr13 77191962 77193135 -24680034 + L1M4 LINE L1 2898 4111 -2035 496 296 123 6 chr13 77193148 77193499 -24679670 + L1M4 LINE L1 4942 5333 -813 2262 144 25 30 chr13 77195973 77196404 -24676765 + L1MC1 LINE L1 5890 6318 -15 323 339 111 18 chr13 77199505 77199676 -24673493 + MIR SINE MIR 20 206 -56 248 295 38 126 chr13 77200335 77200518 -24672651 - MER5A DNA MER1_type -22 167 1 2000 149 0 7 chr13 77202590 77202892 -24670277 + AluJb SINE Alu 5 304 -8 2552 71 0 0 chr13 77202923 77203234 -24669935 + AluY SINE Alu 1 311 0 2581 152 73 2 chr13 77203235 77203675 -24669494 - MER31A LTR ERV1 -12 473 3 1394 226 55 40 chr13 77205713 77206164 -24667005 - LTR40b LTR ERVL -2 460 3 483 219 48 0 chr13 77206166 77206271 -24666898 - HERVL40 LTR ERVL 0 5530 5421 4509 269 46 19 chr13 77206716 77208010 -24665159 - HERVL40 LTR ERVL -860 4670 3342 815 261 28 43 chr13 77208064 77208317 -24664852 - HERVL40 LTR ERVL -3017 2513 2265 209 244 0 0 chr13 77208332 77208377 -24664792 + L2 LINE L2 3261 3305 -8 1014 185 97 13 chr13 77208752 77208979 -24664190 + L1MB4 LINE L1 5931 6176 -4 222 356 55 0 chr13 77209997 77210070 -24663099 + L2 LINE L2 3141 3217 -55 706 294 6 24 chr13 77210805 77211038 -24662131 - MIR SINE MIR -1 261 34 6397 44 16 0 chr13 77212672 77213617 -24659552 - L1P2 LINE L1 -598 5557 4598 4729 32 0 0 chr13 77213624 77214181 -24658988 + L1PA5 LINE L1 5594 6150 -4 198 0 0 0 chr13 77214185 77214207 -24658962 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 605 307 41 44 chr13 77214243 77214504 -24658665 + MIR SINE MIR 3 261 -1 24 0 0 0 chr13 77216116 77216140 -24657029 + AT_rich Low_complexity Low_complexity 1 24 0 422 323 76 64 chr13 77216769 77217113 -24656056 - L2 LINE L2 0 3272 2925 385 335 159 18 chr13 77217222 77217732 -24655437 - L2 LINE L2 -1653 1661 1080 482 338 147 35 chr13 77217820 77218204 -24654965 - L2 LINE L2 -61 3252 2912 2071 129 7 0 chr13 77218204 77218513 -24654656 + AluSx SINE Alu 1 311 -1 482 338 147 35 chr13 77218513 77219050 -24654119 - L2 LINE L2 -401 2912 2227 200 302 70 23 chr13 77219156 77219242 -24653927 - L2 LINE L2 -2906 408 319 1225 208 5 0 chr13 77219470 77219682 -24653487 + MER58A DNA MER1_type 6 218 -6 348 371 41 0 chr13 77220315 77220485 -24652684 - Charlie8 DNA MER1_type -2146 271 95 674 336 43 29 chr13 77221192 77221540 -24651629 - LTR16B LTR ERVL -2 462 110 271 214 8 137 chr13 77221596 77221651 -24651518 - LTR16B LTR ERVL -360 104 70 1960 147 27 27 chr13 77221651 77222026 -24651143 + THE1C LTR MaLR 1 375 0 271 214 8 137 chr13 77222026 77222087 -24651082 - LTR16B LTR ERVL -394 70 3 225 0 0 0 chr13 77223072 77223097 -24650072 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 220 315 148 27 chr13 77224222 77224371 -24648798 + MIR3 SINE MIR 7 173 -35 2260 74 11 0 chr13 77224638 77224922 -24648247 + AluY SINE Alu 6 292 -19 1344 209 65 85 chr13 77225364 77225831 -24647338 - MER66A LTR ERV1 0 478 97 1383 234 40 0 chr13 77225958 77226261 -24646908 - MLT1E2 LTR MaLR 0 626 312 1666 172 4 4 chr13 77226297 77226564 -24646605 - AluJo SINE Alu -45 267 1 412 239 161 8 chr13 77226582 77226712 -24646457 - MLT1E2 LTR MaLR -503 151 2 500 331 24 44 chr13 77226812 77227060 -24646109 + MIR SINE MIR 12 254 -8 195 362 52 26 chr13 77227082 77227198 -24645971 - MIR SINE MIR -137 125 7 584 302 87 7 chr13 77227264 77227552 -24645617 + L2 LINE L2 1407 1717 -1597 644 280 48 0 chr13 77227589 77227775 -24645394 + L2 LINE L2 2395 2589 -725 511 276 64 34 chr13 77227789 77228068 -24645101 + L2 LINE L2 2768 3049 -264 222 37 0 0 chr13 77228074 77228101 -24645068 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1596 186 0 28 chr13 77228106 77228391 -24644778 - AluJo SINE Alu -35 277 1 563 146 0 0 chr13 77228505 77228594 -24644575 - AluJ/FLAM SINE Alu -223 89 1 433 289 40 40 chr13 77228695 77228868 -24644301 + L2 LINE L2 3136 3308 -5 395 394 8 43 chr13 77228935 77229189 -24643980 - L2 LINE L2 -37 3235 2991 983 244 44 15 chr13 77230763 77231034 -24642135 - MLT1C LTR MaLR 0 467 189 641 206 18 61 chr13 77231172 77231337 -24641832 - MLT1C LTR MaLR -347 158 1 1700 161 21 14 chr13 77231342 77231628 -24641541 - AluJo SINE Alu -24 288 1 1070 187 23 23 chr13 77231744 77231958 -24641211 - MER20 DNA MER1_type 0 219 6 1652 157 76 28 chr13 77232285 77232641 -24640528 - THE1C LTR MaLR 0 375 3 1868 153 3 3 chr13 77233933 77234252 -24638917 - AluSx SINE Alu 0 324 6 284 247 27 55 chr13 77234378 77234451 -24638718 - MER91B DNA MER1_type -116 74 4 1117 227 99 104 chr13 77234485 77234899 -24638270 + MLT2B1 LTR ERVL 1 412 -2 29 60 0 0 chr13 77235291 77235341 -24637828 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr13 77235416 77235439 -24637730 + AT_rich Low_complexity Low_complexity 1 23 0 201 174 58 29 chr13 77235883 77235952 -24637217 + T-rich Low_complexity Low_complexity 2 72 0 3724 112 16 36 chr13 77236164 77236776 -24636393 + L1PB4 LINE L1 5518 6118 -38 2074 129 23 0 chr13 77236776 77236896 -24636273 + AluSx SINE Alu 4 120 -192 315 0 0 0 chr13 77236896 77236931 -24636238 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2074 129 23 0 chr13 77236931 77237112 -24636057 + AluSx SINE Alu 120 312 0 3724 112 16 36 chr13 77237112 77237141 -24636028 + L1PB4 LINE L1 6118 6146 -10 262 308 137 17 chr13 77237162 77237279 -24635890 + MIR SINE MIR 20 150 -112 1367 111 65 9 chr13 77238339 77238556 -24634613 - MER30 DNA MER1_type 0 230 2 2345 210 72 45 chr13 77238748 77238889 -24634280 - Charlie2a DNA MER1_type -10 2852 2716 2502 51 0 0 chr13 77238889 77239183 -24633986 - AluY SINE Alu -17 294 1 2345 210 72 45 chr13 77239183 77239898 -24633271 - Charlie2a DNA MER1_type -146 2716 1879 1950 104 28 17 chr13 77239898 77240186 -24632983 + AluSg SINE Alu 1 291 -19 2345 210 72 45 chr13 77240186 77240629 -24632540 - Charlie2a DNA MER1_type -983 1879 1449 552 216 159 26 chr13 77240653 77240880 -24632289 - Charlie2a DNA MER1_type -1563 1299 1043 525 251 269 3 chr13 77241124 77241447 -24631722 - Charlie2a DNA MER1_type -2382 480 72 346 257 76 21 chr13 77241600 77241744 -24631425 - Charlie8 DNA MER1_type -2235 182 31 213 211 88 0 chr13 77241966 77242023 -24631146 - L2 LINE L2 0 3272 3211 477 297 22 0 chr13 77243135 77243273 -24629896 + MIR SINE MIR 122 262 0 1009 240 92 35 chr13 77243453 77243736 -24629433 + LTR33 LTR ERVL 13 311 -210 4795 207 65 29 chr13 77244186 77245881 -24627288 - L1ME1 LINE L1 -296 5870 4109 4767 250 28 19 chr13 77245882 77248031 -24625138 - L1PA15-16 LINE L1 -2867 3336 1145 734 216 23 11 chr13 77248046 77248222 -24624947 - L1PB4 LINE L1 0 6156 5979 804 266 56 139 chr13 77248225 77249311 -24623858 - L1PA15-16 LINE L1 -5156 1048 53 365 365 127 43 chr13 77249474 77250009 -24623160 - L1M2 LINE L1 -6251 598 19 507 211 58 0 chr13 77250009 77250113 -24623056 - MLT1A1 LTR MaLR -75 290 181 3096 237 60 11 chr13 77250125 77251107 -24622062 - L1M4 LINE L1 -782 5364 4335 658 330 18 0 chr13 77251222 77251504 -24621665 - L1M4 LINE L1 -2532 3614 3328 907 171 57 11 chr13 77253221 77253397 -24619772 - MER3 DNA MER1_type -25 184 1 1536 223 93 26 chr13 77253599 77254242 -24618927 - MER69B DNA AcHobo -1 1225 512 1619 279 45 16 chr13 77254991 77255503 -24617666 - MER69B DNA AcHobo -699 527 1 1933 185 54 27 chr13 77255697 77255781 -24617388 - MER47B DNA MER2_type -1905 418 338 2298 84 3 3 chr13 77255781 77256077 -24617092 + AluSx SINE Alu 1 296 -16 1933 185 54 27 chr13 77256077 77256397 -24616772 - MER47B DNA MER2_type -1985 338 3 2253 96 0 0 chr13 77256933 77257243 -24615926 + AluSg SINE Alu 1 310 0 29 0 0 0 chr13 77257999 77258028 -24615141 + AT_rich Low_complexity Low_complexity 1 29 0 945 163 114 5 chr13 77258198 77258382 -24614787 - Tigger7 DNA MER2_type -1828 659 456 473 336 130 14 chr13 77258594 77258817 -24614352 - MIR SINE MIR -13 249 1 269 340 85 7 chr13 77258979 77259120 -24614049 - L2 LINE L2 0 3313 3162 2162 256 62 20 chr13 77259120 77259605 -24613564 + L1M4c LINE L1 1066 1594 -4790 3917 193 29 4 chr13 77259605 77260319 -24612850 - MER44D DNA MER2_type -1 604 1 2162 256 62 20 chr13 77260319 77260578 -24612591 + L1M4c LINE L1 1594 1841 -4543 2147 213 79 6 chr13 77260659 77261142 -24612027 + MER54A LTR ERVL 1 518 -383 426 169 0 0 chr13 77261187 77261252 -24611917 - MER54A LTR ERVL -35 866 802 * 2145 200 31 0 chr13 77261247 77261632 -24611537 + MER54A LTR ERVL 505 901 0 1445 244 41 33 chr13 77261655 77262019 -24611150 - MLT1A2 LTR MaLR 0 374 8 369 333 52 0 chr13 77262030 77262165 -24611004 + LTR16C LTR ERVL 350 491 0 344 246 18 44 chr13 77262176 77262290 -24610879 + L1ME3A LINE L1 5690 5800 -370 304 203 0 31 chr13 77262299 77262393 -24610776 + L1ME3A LINE L1 5874 5962 -208 214 254 14 14 chr13 77262568 77262639 -24610530 + (CATA)n Simple_repeat Simple_repeat 1 71 0 291 119 0 0 chr13 77262641 77262683 -24610486 + Alu SINE Alu 254 295 -7 54 29 0 0 chr13 77262808 77262876 -24610293 + AT_rich Low_complexity Low_complexity 1 68 0 204 298 73 32 chr13 77263341 77263465 -24609704 + MIR SINE MIR 59 187 -75 1391 175 45 45 chr13 77264113 77264405 -24608764 + AluJo SINE Alu 1 292 -20 347 288 96 40 chr13 77264601 77264726 -24608443 - L2 LINE L2 -2 3270 3139 216 391 87 34 chr13 77264981 77265303 -24607866 + L2 LINE L2 2914 3252 -20 2112 113 0 0 chr13 77265890 77266174 -24606995 + AluSx SINE Alu 1 334 0 360 40 0 20 chr13 77266174 77266224 -24606945 + (TAA)n Simple_repeat Simple_repeat 2 180 0 239 312 138 7 chr13 77267108 77267246 -24605923 + MLT1J LTR MaLR 227 382 -129 1513 233 133 46 chr13 77268060 77268648 -24604521 + MLT1E2 LTR MaLR 1 626 0 2146 166 0 6 chr13 77268680 77269030 -24604139 + MER7A DNA MER2_type 1 346 0 23 0 0 0 chr13 77269545 77269568 -24603601 + AT_rich Low_complexity Low_complexity 1 23 0 1317 189 51 18 chr13 77269629 77269962 -24603207 - LTR37A LTR ERV1 -2 424 81 909 181 6 0 chr13 77269976 77270087 -24603082 + AluJb SINE Alu 11 125 -187 315 0 0 0 chr13 77270087 77270122 -24603047 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 909 181 6 0 chr13 77270122 77270176 -24602993 + AluJb SINE Alu 125 177 -135 250 214 12 71 chr13 77270292 77270376 -24602793 + LTR37A LTR ERV1 2 80 -346 1700 166 38 10 chr13 77270379 77270668 -24602501 - AluJb SINE Alu -15 297 1 1273 225 84 47 chr13 77270932 77271314 -24601855 + MSTD LTR MaLR 1 396 0 21 57 0 0 chr13 77271455 77271490 -24601679 + AT_rich Low_complexity Low_complexity 1 35 0 464 277 130 11 chr13 77273081 77273265 -24599904 - MLT1B-int LTR MaLR -839 532 327 1062 175 20 5 chr13 77273539 77273739 -24599430 - MLT1B LTR MaLR -48 342 140 1758 242 28 32 chr13 77273755 77274226 -24598943 - MLT1G LTR MaLR -121 469 1 940 206 36 31 chr13 77275063 77275286 -24597883 - MER58A DNA MER1_type 0 224 1 796 247 19 0 chr13 77275293 77275455 -24597714 + MER5A DNA MER1_type 10 174 -15 2246 122 0 6 chr13 77275716 77276028 -24597141 - AluSg SINE Alu 0 310 1 252 0 0 0 chr13 77276701 77276729 -24596440 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1930 97 15 0 chr13 77276734 77277003 -24596166 - AluSx SINE Alu -39 273 1 438 254 100 38 chr13 77277457 77277697 -24595472 - MER112 DNA MER1_type -1 255 1 3534 134 83 34 chr13 77277952 77278684 -24594485 + LTR1B LTR ERV1 1 785 0 23 54 0 0 chr13 77279058 77279095 -24594074 + AT_rich Low_complexity Low_complexity 1 37 0 2306 174 17 19 chr13 77279134 77279563 -24593606 + MSTB1 LTR MaLR 2 430 -2 30 27 0 0 chr13 77279708 77279745 -24593424 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr13 77280379 77280402 -24592767 + AT_rich Low_complexity Low_complexity 1 23 0 1649 276 66 77 chr13 77280788 77281057 -24592112 - L1MC4 LINE L1 -3 8039 7769 2245 122 33 28 chr13 77281057 77281419 -24591750 + THE1B LTR MaLR 1 364 0 1649 276 66 77 chr13 77281419 77282271 -24590898 - L1MC4 LINE L1 -273 7769 6930 774 163 14 21 chr13 77282271 77282410 -24590759 + MER2 DNA MER2_type 2 139 -206 2187 121 80 31 chr13 77282410 77282876 -24590293 + MER1A DNA MER1_type 1 529 0 1192 153 24 0 chr13 77282876 77283085 -24590084 + MER2 DNA MER2_type 132 345 0 748 194 42 26 chr13 77283089 77283270 -24589899 - L1MC4 LINE L1 -1085 6916 6723 1109 173 5 36 chr13 77283689 77283909 -24589260 + AluJb SINE Alu 87 299 -13 1373 168 8 16 chr13 77284074 77284318 -24588851 - AluJo SINE Alu -70 242 1 190 274 0 0 chr13 77284382 77284433 -24588736 - MIR SINE MIR -1 261 211 2090 96 17 17 chr13 77284924 77285217 -24587952 - AluSq SINE Alu 0 313 21 2685 113 36 5 chr13 77285419 77285834 -24587335 - MSTA LTR MaLR 0 428 1 1721 160 3 25 chr13 77285836 77286118 -24587051 - AluJo SINE Alu -36 276 1 368 296 108 34 chr13 77286126 77286302 -24586867 - L2 LINE L2 -20 3293 3105 1509 171 63 7 chr13 77286538 77286824 -24586345 - AluJo SINE Alu -10 302 1 2226 174 66 14 chr13 77287755 77288193 -24584976 + LOR1b LTR ERV1 1 461 0 1486 170 50 76 chr13 77288716 77289099 -24584070 + THE1C LTR MaLR 1 373 -2 207 0 0 0 chr13 77290008 77290031 -24583138 + (T)n Simple_repeat Simple_repeat 1 23 0 247 329 0 0 chr13 77290168 77290253 -24582916 - MER112 DNA MER1_type -10 250 166 435 52 21 42 chr13 77290992 77291088 -24582081 + (TA)n Simple_repeat Simple_repeat 2 95 0 207 0 0 0 chr13 77291212 77291235 -24581934 + (A)n Simple_repeat Simple_repeat 1 23 0 329 86 75 0 chr13 77291416 77291509 -24581660 + (TA)n Simple_repeat Simple_repeat 1 100 0 750 232 60 102 chr13 77291950 77292333 -24580836 + HAL1b LINE L1 213 579 -769 432 263 47 29 chr13 77292651 77292822 -24580347 - MER112 DNA MER1_type -86 174 1 420 157 50 77 chr13 77292991 77293172 -24579997 + HsTC2 DNA Tc2 1 1884 -14 518 290 108 22 chr13 77293776 77294045 -24579124 - LTR41 LTR ERVL -6 767 476 541 228 56 28 chr13 77294308 77294488 -24578681 - LTR41 LTR ERVL -588 185 1 733 226 18 12 chr13 77294646 77294810 -24578359 + AluJb SINE Alu 137 301 -11 27 62 0 0 chr13 77295220 77295268 -24577901 + AT_rich Low_complexity Low_complexity 1 48 0 216 0 0 0 chr13 77296237 77296261 -24576908 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr13 77297304 77297325 -24575844 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 77297798 77297820 -24575349 + AT_rich Low_complexity Low_complexity 1 22 0 718 296 55 41 chr13 77298949 77299368 -24573801 + L1ME3A LINE L1 5522 5946 -224 222 172 184 69 chr13 77300174 77300261 -24572908 - L2 LINE L2 0 3313 3217 447 114 0 38 chr13 77300742 77300860 -24572309 - L1PA8 LINE L1 0 6172 6085 35 0 0 0 chr13 77300887 77300922 -24572247 + AT_rich Low_complexity Low_complexity 1 35 0 1365 191 100 49 chr13 77301952 77302361 -24570808 + Tigger2a DNA MER2_type 3 432 -2 495 0 0 0 chr13 77302418 77302473 -24570696 + (CA)n Simple_repeat Simple_repeat 2 56 0 653 165 25 3 chr13 77303402 77303661 -24569508 + AluSx SINE Alu 1 253 -352 952 132 6 6 chr13 77303661 77303828 -24569341 + (GGAA)n Simple_repeat Simple_repeat 4 170 0 653 165 25 3 chr13 77303828 77303912 -24569257 + AluSx SINE Alu 253 605 0 34 72 0 0 chr13 77304078 77304147 -24569022 + AT_rich Low_complexity Low_complexity 1 69 0 23 33 0 0 chr13 77304314 77304344 -24568825 + AT_rich Low_complexity Low_complexity 1 30 0 203 274 36 48 chr13 77304967 77305051 -24568118 + MIR SINE MIR 58 140 -68 1928 149 54 11 chr13 77305189 77305538 -24567631 - THE1B LTR MaLR 0 364 1 837 266 34 30 chr13 77306110 77306347 -24566822 + MIR SINE MIR 12 249 -13 1883 80 87 63 chr13 77306837 77307136 -24566033 - AluSx SINE Alu -6 306 1 1496 196 34 3 chr13 77308235 77308526 -24564643 - AluJb SINE Alu -12 300 1 207 0 0 0 chr13 77312220 77312243 -24560926 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 268 287 90 112 chr13 77312757 77312888 -24560281 - MIR SINE MIR 0 262 130 387 0 0 0 chr13 77312888 77312931 -24560238 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2079 118 0 10 chr13 77312933 77313221 -24559948 - AluSg SINE Alu -25 285 1 268 287 90 112 chr13 77313221 77313354 -24559815 - MIR SINE MIR -133 129 1 7827 175 75 55 chr13 77314701 77314882 -24558287 - L1MA9 LINE L1 -1 6472 6296 720 208 8 0 chr13 77314882 77315012 -24558157 - FLAM_C SINE Alu -2 131 1 7827 175 75 55 chr13 77315012 77315195 -24557974 - L1MA9 LINE L1 -177 6296 6118 2100 103 3 45 chr13 77315195 77315506 -24557663 - AluSp SINE Alu -15 298 1 7827 175 75 55 chr13 77315506 77315751 -24557418 - L1MA9 LINE L1 -355 6118 5880 1712 171 49 30 chr13 77315751 77316119 -24557050 - THE1C LTR MaLR 0 375 1 7827 175 75 55 chr13 77316119 77316167 -24557002 - L1MA9 LINE L1 -593 5880 5834 1996 153 13 0 chr13 77316167 77316475 -24556694 - AluJo SINE Alu 0 312 1 7827 175 75 55 chr13 77316475 77317767 -24555402 - L1MA9 LINE L1 -639 5834 4467 2092 133 7 0 chr13 77317767 77318068 -24555101 - AluSx SINE Alu -9 303 1 7827 175 75 55 chr13 77318068 77318705 -24554464 - L1MA9 LINE L1 -2006 4467 3845 291 175 0 0 chr13 77318716 77318773 -24554396 + (TA)n Simple_repeat Simple_repeat 1 57 0 233 109 91 18 chr13 77318778 77318833 -24554336 + L1 LINE L1 3224 3282 -2864 22 0 0 0 chr13 77319095 77319117 -24554052 + AT_rich Low_complexity Low_complexity 1 22 0 216 67 0 0 chr13 77319213 77319243 -24553926 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 288 233 133 0 chr13 77320456 77320546 -24552623 + L1ME3 LINE L1 6031 6132 -30 364 223 0 43 chr13 77321967 77322061 -24551108 + L1MC4 LINE L1 6614 6703 -1339 318 296 23 0 chr13 77321999 77322087 -24551082 - L1MC4 LINE L1 -1339 6703 6614 * 231 167 0 0 chr13 77322101 77322143 -24551026 + (TA)n Simple_repeat Simple_repeat 1 42 0 6539 195 28 39 chr13 77322143 77325245 -24547924 - L1MA9 LINE L1 -2486 3842 706 1574 211 7 0 chr13 77325245 77325520 -24547649 - AluJb SINE Alu -35 277 1 6539 195 28 39 chr13 77325520 77326128 -24547041 - L1MA9 LINE L1 -5622 706 170 257 0 0 29 chr13 77326128 77326162 -24547007 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6539 195 28 39 chr13 77326162 77326331 -24546838 - L1MA9 LINE L1 -6158 170 1 301 351 41 0 chr13 77327022 77327193 -24545976 + MER5B DNA MER1_type 1 178 0 21 36 0 0 chr13 77327455 77327483 -24545686 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 77328360 77328381 -24544788 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr13 77331026 77331059 -24542110 + GC_rich Low_complexity Low_complexity 1 33 0 2160 126 0 3 chr13 77333968 77334278 -24538891 + AluSx SINE Alu 1 309 -3 677 225 19 25 chr13 77336405 77336565 -24536604 + MER2 DNA MER2_type 2 160 -185 221 368 70 18 chr13 77338095 77338209 -24534960 + L2 LINE L2 2911 3030 -283 193 269 90 15 chr13 77338273 77338340 -24534829 + MER5A DNA MER1_type 41 112 -77 252 317 29 39 chr13 77338364 77338468 -24534701 + L2 LINE L2 3191 3293 -20 243 278 298 8 chr13 77338628 77338883 -24534286 - Charlie2b DNA MER1_type -1733 1049 721 237 229 62 0 chr13 77339841 77339889 -24533280 + L2 LINE L2 3011 3061 -252 1117 203 156 74 chr13 77339987 77340016 -24533153 - MLT1D LTR MaLR -14 491 466 1850 89 16 16 chr13 77340016 77340274 -24532895 - AluSg SINE Alu -16 294 37 1117 203 156 74 chr13 77340274 77340692 -24532477 - MLT1D LTR MaLR -39 466 7 203 226 210 0 chr13 77341512 77341574 -24531595 + L2 LINE L2 3235 3309 -4 717 251 38 22 chr13 77345247 77345430 -24527739 - MIR SINE MIR -69 193 8 241 248 116 8 chr13 77345478 77345607 -24527562 + L1ME4a LINE L1 5978 6120 -1 555 231 96 82 chr13 77347218 77347391 -24525778 + MLT1J LTR MaLR 1 170 -341 1799 151 17 7 chr13 77347391 77347683 -24525486 + AluJb SINE Alu 7 301 -11 555 231 96 82 chr13 77347683 77347885 -24525284 + MLT1J LTR MaLR 170 381 -130 534 310 106 33 chr13 77349145 77349600 -24523569 - ERVL LTR ERVL -956 4808 4321 263 269 0 0 chr13 77349647 77349714 -24523455 + MLT1J LTR MaLR 400 466 -45 1289 211 127 57 chr13 77350446 77351103 -24522066 + LTR41 LTR ERVL 1 772 -1 397 282 99 33 chr13 77351587 77351768 -24521401 + MLT1J LTR MaLR 4 196 -315 21 71 0 0 chr13 77353023 77353065 -24520104 + AT_rich Low_complexity Low_complexity 1 42 0 23 68 0 0 chr13 77353152 77353196 -24519973 + AT_rich Low_complexity Low_complexity 1 44 0 24 85 0 0 chr13 77353232 77353291 -24519878 + AT_rich Low_complexity Low_complexity 1 59 0 1302 268 105 14 chr13 77354516 77355088 -24518081 - MLT1E3 LTR MaLR 0 624 1 226 266 63 91 chr13 77355880 77356023 -24517146 + MIR SINE MIR 87 225 -37 455 241 96 37 chr13 77356222 77356490 -24516679 - LTR33A LTR ERVL -36 487 148 1289 274 160 14 chr13 77356989 77357507 -24515662 + MLT1G1 LTR MaLR 2 595 0 368 291 73 9 chr13 77357847 77357957 -24515212 - L2 LINE L2 -1 3312 3196 683 209 8 0 chr13 77358159 77358293 -24514876 + FLAM_C SINE Alu 1 135 -8 2162 54 0 4 chr13 77358772 77359031 -24514138 + AluY SINE Alu 37 294 -17 28 71 0 0 chr13 77359444 77359500 -24513669 + AT_rich Low_complexity Low_complexity 1 56 0 769 156 8 0 chr13 77359651 77359773 -24513396 - MSTB LTR MaLR -57 369 247 225 205 18 36 chr13 77360425 77360537 -24512632 + GA-rich Low_complexity Low_complexity 3 112 0 281 410 42 0 chr13 77360587 77360731 -24512438 + L2 LINE L2 3123 3272 0 240 290 58 0 chr13 77360840 77360909 -24512260 + MIR SINE MIR 4 76 -186 224 184 41 0 chr13 77361081 77361130 -24512039 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 329 311 0 0 chr13 77361130 77361220 -24511949 - L1MC4 LINE L1 -1339 6703 6614 * 355 289 0 0 chr13 77361144 77361234 -24511935 + L1MC4 LINE L1 6614 6703 -1339 240 35 0 0 chr13 77361234 77361263 -24511906 + (TA)n Simple_repeat Simple_repeat 1 29 0 1159 173 93 17 chr13 77363383 77363683 -24509486 - MER33 DNA MER1_type -1 323 1 618 253 51 22 chr13 77364147 77364325 -24508844 + MIR SINE MIR 17 199 -63 183 42 0 0 chr13 77365822 77365846 -24507323 + (TTTTTA)n Simple_repeat Simple_repeat 4 27 0 21 0 0 0 chr13 77366128 77366149 -24507020 + AT_rich Low_complexity Low_complexity 1 21 0 700 111 17 0 chr13 77366332 77366449 -24506720 + (GA)n Simple_repeat Simple_repeat 1 119 0 22 0 0 0 chr13 77367186 77367208 -24505961 + AT_rich Low_complexity Low_complexity 1 22 0 587 279 48 44 chr13 77367271 77367500 -24505669 + MIR SINE MIR 31 260 -2 26 30 0 0 chr13 77367704 77367737 -24505432 + AT_rich Low_complexity Low_complexity 1 33 0 198 300 0 0 chr13 77367857 77367907 -24505262 - L3 LINE CR1 -11 1566 1517 219 114 0 0 chr13 77368845 77368880 -24504289 + (T)n Simple_repeat Simple_repeat 1 35 0 217 284 49 74 chr13 77369371 77369452 -24503717 + L2 LINE L2 3208 3286 -27 1807 169 3 7 chr13 77369810 77370105 -24503064 + AluJb SINE Alu 2 295 -17 276 270 16 0 chr13 77370734 77370797 -24502372 - L2 LINE L2 -3 3269 3206 230 284 174 37 chr13 77371204 77371313 -24501856 - MER5A DNA MER1_type -63 126 3 203 43 43 43 chr13 77371360 77371407 -24501762 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr13 77371440 77371493 -24501676 + AT_rich Low_complexity Low_complexity 1 53 0 872 198 104 135 chr13 77371978 77372135 -24501034 - MLT1C LTR MaLR -1 466 306 816 87 24 24 chr13 77372135 77372261 -24500908 - L1PA10 LINE L1 -2 6166 6041 872 198 104 135 chr13 77372261 77372584 -24500585 - MLT1C LTR MaLR -161 306 1 366 301 40 23 chr13 77373801 77373974 -24499195 - MIR SINE MIR -15 247 72 189 0 0 0 chr13 77375367 77375388 -24497781 + (TG)n Simple_repeat Simple_repeat 1 21 0 255 122 0 0 chr13 77375518 77375567 -24497602 + (TCTCC)n Simple_repeat Simple_repeat 2 50 0 1904 159 0 7 chr13 77375567 77375868 -24497301 - AluJb SINE Alu -11 301 3 1226 188 40 67 chr13 77376143 77376472 -24496697 - LTR53 LTR ERVL -11 508 189 385 269 200 23 chr13 77376884 77377059 -24496110 + MIR SINE MIR 8 213 -49 2220 109 3 0 chr13 77377209 77377512 -24495657 - AluSg SINE Alu -6 304 1 834 242 51 19 chr13 77378648 77378863 -24494306 + MIR SINE MIR 20 241 -21 354 275 93 57 chr13 77380082 77380322 -24492847 - L1M2 LINE L1 -5930 919 464 389 292 139 23 chr13 77384043 77384259 -24488910 + MIR SINE MIR 22 262 0 640 280 140 15 chr13 77384777 77385106 -24488063 - MER90 LTR ERV1 -1 613 244 1066 210 5 18 chr13 77386752 77386971 -24486198 - MER20 DNA MER1_type -1 218 3 301 311 141 72 chr13 77387017 77387232 -24485937 + L2 LINE L2 2987 3231 -82 734 246 17 11 chr13 77387232 77387333 -24485836 + MER45A DNA AcHobo 2 106 -1475 1745 197 0 3 chr13 77387333 77387628 -24485541 - AluJb SINE Alu -18 294 1 734 246 17 11 chr13 77387628 77387701 -24485468 + MER45A DNA AcHobo 106 177 -1 301 311 141 72 chr13 77387701 77387791 -24485378 + L2 LINE L2 3231 3313 0 1739 232 42 40 chr13 77387920 77388450 -24484719 + LTR55 LTR ERV 1 531 -17 2751 157 20 29 chr13 77389469 77390030 -24483139 - L1MA8 LINE L1 -1 6290 5735 240 35 0 0 chr13 77391196 77391225 -24481944 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1816 155 0 0 chr13 77391258 77391562 -24481607 - L1PA16 LINE L1 -2 6164 5861 255 286 36 0 chr13 77391597 77391680 -24481489 + MIR SINE MIR 28 114 -94 2479 68 0 3 chr13 77391893 77392202 -24480967 - AluY SINE Alu -3 308 1 24 32 0 0 chr13 77392304 77392335 -24480834 + AT_rich Low_complexity Low_complexity 1 31 0 2050 84 0 0 chr13 77392411 77392692 -24480477 + AluSc SINE Alu 28 308 0 23 33 0 0 chr13 77393307 77393337 -24479832 + AT_rich Low_complexity Low_complexity 1 30 0 181 279 75 68 chr13 77393701 77393862 -24479307 + L2 LINE L2 2496 2657 -657 254 263 120 15 chr13 77394331 77394464 -24478705 + L1ME LINE L1 5561 5707 -414 1732 183 17 0 chr13 77394555 77394850 -24478319 + AluJo SINE Alu 1 300 -12 2468 109 16 19 chr13 77395648 77396024 -24477145 + THE1C LTR MaLR 1 375 0 843 226 49 30 chr13 77396625 77396890 -24476279 + LTR40c LTR ERVL 1 270 -195 238 328 94 23 chr13 77397174 77397302 -24475867 + MIR SINE MIR 48 184 -78 304 308 111 34 chr13 77397487 77397604 -24475565 + L2 LINE L2 3139 3264 -8 286 211 26 0 chr13 77397911 77397987 -24475182 - MER103 DNA DNA -22 144 67 198 0 0 0 chr13 77398010 77398032 -24475137 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3423 54 16 0 chr13 77398032 77398461 -24474708 - L1PA6 LINE L1 -18 6136 5701 207 307 50 36 chr13 77398754 77398894 -24474275 - L2 LINE L2 -965 2349 2208 305 244 63 39 chr13 77399320 77399447 -24473722 - MER65B LTR ERV1 -401 130 1 1174 233 4 8 chr13 77399450 77399703 -24473466 + Tigger7 DNA MER2_type 13 264 -469 263 222 0 32 chr13 77399705 77399768 -24473401 + Tigger7 DNA MER2_type 2392 2452 -35 310 354 102 17 chr13 77399769 77400063 -24473106 - L2 LINE L2 -1243 2071 1753 337 314 58 17 chr13 77400137 77400309 -24472860 - L2 LINE L2 -449 2865 2687 1926 127 84 9 chr13 77402174 77402521 -24470648 + THE1C LTR MaLR 3 375 0 2011 161 59 12 chr13 77403843 77403909 -24469260 - MSTC LTR MaLR -5 423 362 2147 133 7 0 chr13 77403909 77404211 -24468958 + AluSx SINE Alu 1 304 -8 2011 161 59 12 chr13 77404211 77404548 -24468621 - MSTC LTR MaLR -66 362 1 296 277 0 0 chr13 77404770 77404835 -24468334 + MIR SINE MIR 4 68 -194 312 302 43 17 chr13 77404887 77405003 -24468166 + HAL1b LINE L1 311 429 -919 1613 116 45 57 chr13 77405101 77405437 -24467732 + L1MA7 LINE L1 5960 6291 0 2414 75 0 10 chr13 77405918 77406223 -24466946 - AluSx SINE Alu -10 302 1 208 179 26 0 chr13 77406682 77406721 -24466448 - L2 LINE L2 -18 3254 3215 2107 130 43 27 chr13 77406896 77407265 -24465904 + THE1C LTR MaLR 1 375 0 3776 119 121 3 chr13 77407266 77407930 -24465239 + THE1C-int LTR MaLR 2 743 -837 1948 187 38 28 chr13 77407933 77408470 -24464699 - MLT2A2 LTR ERVL -8 546 1 5267 117 30 6 chr13 77408472 77409293 -24463876 + THE1C-int LTR MaLR 740 1580 0 1803 160 50 22 chr13 77409295 77409658 -24463511 + THE1C LTR MaLR 3 375 0 801 249 91 32 chr13 77409824 77410109 -24463060 - LTR28 LTR ERV1 -718 302 1 2173 147 0 0 chr13 77410360 77410666 -24462503 - AluSx SINE Alu -5 307 2 212 312 129 11 chr13 77411153 77411246 -24461923 - MER5B DNA MER1_type 0 178 75 189 345 70 14 chr13 77411308 77411450 -24461719 - L2 LINE L2 -516 2798 2649 279 299 49 21 chr13 77411784 77411928 -24461241 + MLT1L LTR MaLR 130 277 -338 1921 160 0 14 chr13 77412338 77412626 -24460543 - AluJb SINE Alu -28 284 1 195 100 0 0 chr13 77413621 77413651 -24459518 + (CTG)n Simple_repeat Simple_repeat 3 32 0 438 20 0 0 chr13 77413651 77413702 -24459467 + (TG)n Simple_repeat Simple_repeat 2 52 0 297 274 147 10 chr13 77414422 77414524 -24458645 - L2 LINE L2 -16 3256 3141 31866 40 11 2 chr13 77414649 77420533 -24452636 - L1PA4 LINE L1 0 6155 8 699 309 204 25 chr13 77420538 77420611 -24452558 + L2 LINE L2 2068 2127 -1187 899 211 18 57 chr13 77420611 77420838 -24452331 + MER20 DNA MER1_type 1 218 -1 699 309 204 25 chr13 77420838 77421446 -24451723 + L2 LINE L2 2127 2871 -443 2495 254 72 51 chr13 77421459 77422666 -24450503 - L1ME LINE L1 -4815 1265 47 327 290 65 26 chr13 77423532 77423687 -24449482 - L1ME3A LINE L1 -6 6164 6004 2059 245 58 65 chr13 77423805 77423830 -24449339 - L1MC5 LINE L1 -430 7531 7507 660 192 23 0 chr13 77423830 77423960 -24449209 - L1MB1 LINE L1 0 6168 6036 2059 245 58 65 chr13 77423960 77424603 -24448566 - L1MC5 LINE L1 -454 7507 6863 1518 188 104 22 chr13 77424603 77424960 -24448209 + MLT1B LTR MaLR 5 390 0 2059 245 58 65 chr13 77424960 77425346 -24447823 - L1MC5 LINE L1 -1098 6863 6476 3359 191 39 32 chr13 77426306 77426915 -24446254 - MER44D DNA MER2_type -1883 604 115 2015 136 0 0 chr13 77426915 77427218 -24445951 - AluSx SINE Alu 0 307 5 3359 191 39 32 chr13 77427218 77427334 -24445835 - MER44D DNA MER2_type -2372 115 1 193 388 10 38 chr13 77428354 77428563 -24444606 - L2 LINE L2 -338 2976 2774 1419 66 0 6 chr13 77430807 77430990 -24442179 - L1PA8 LINE L1 -13 6159 5978 24 53 0 0 chr13 77431484 77431522 -24441647 + AT_rich Low_complexity Low_complexity 1 38 0 36 70 0 0 chr13 77432173 77432244 -24440925 + AT_rich Low_complexity Low_complexity 1 71 0 2110 142 0 0 chr13 77433060 77433363 -24439806 - AluSg SINE Alu -7 303 1 1625 198 3 13 chr13 77433418 77433731 -24439438 - AluJb SINE Alu -2 310 1 22 94 0 0 chr13 77434157 77434221 -24438948 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr13 77434252 77434275 -24438894 + AT_rich Low_complexity Low_complexity 1 23 0 189 74 0 0 chr13 77435148 77435175 -24437994 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 205 247 82 27 chr13 77435268 77435341 -24437828 - L2 LINE L2 -1 3312 3236 328 217 43 0 chr13 77436284 77436353 -24436816 - FLAM_A SINE Alu -46 87 16 427 293 84 45 chr13 77436456 77436925 -24436244 - L1ME3A LINE L1 -295 5867 5377 22 80 0 0 chr13 77437949 77437999 -24435170 + AT_rich Low_complexity Low_complexity 1 50 0 957 288 130 18 chr13 77439290 77439728 -24433441 - L2 LINE L2 0 3313 2827 583 173 0 10 chr13 77439816 77439920 -24433249 + L1MB2 LINE L1 4018 4120 -2026 * 1610 253 98 18 chr13 77439902 77440451 -24432718 + L1MB2 LINE L1 5344 5936 -235 * 3972 72 4 20 chr13 77440124 77440667 -24432502 + L1PB1 LINE L1 5618 6151 0 530 177 0 0 chr13 77440676 77440772 -24432397 + AluJ/FRAM SINE Alu 217 312 0 221 210 97 0 chr13 77440827 77440889 -24432280 - L2 LINE L2 -719 2595 2528 2040 128 3 32 chr13 77441737 77442049 -24431120 - AluSx SINE Alu -9 303 1 22 0 0 0 chr13 77442050 77442072 -24431097 + AT_rich Low_complexity Low_complexity 1 22 0 589 235 30 116 chr13 77442834 77443102 -24430067 + MIR SINE MIR 18 262 0 23 54 0 0 chr13 77444349 77444386 -24428783 + AT_rich Low_complexity Low_complexity 1 37 0 1099 194 68 56 chr13 77444489 77444829 -24428340 + MER2 DNA MER2_type 1 344 0 4555 200 103 12 chr13 77444901 77446466 -24426703 + L1MD2 LINE L1 4632 6344 -15 537 207 60 11 chr13 77446667 77446782 -24426387 - L1ME1 LINE L1 -5 6161 6047 229 313 73 20 chr13 77446782 77446932 -24426237 - L1MA8 LINE L1 -299 5992 5835 1346 231 51 10 chr13 77446977 77447388 -24425781 + MER114 LTR ERV 1 428 -220 2537 133 23 5 chr13 77447466 77447865 -24425304 + LTR57 LTR ERVL 6 411 0 228 267 9 38 chr13 77448900 77449005 -24424164 + CT-rich Low_complexity Low_complexity 2 103 0 309 254 144 55 chr13 77449171 77449372 -24423797 - L1M4 LINE L1 -3060 3086 2868 354 350 38 0 chr13 77449478 77449638 -24423531 - MLT1I LTR MaLR -151 258 93 1764 199 86 29 chr13 77449743 77450185 -24422984 + MLT1C LTR MaLR 1 467 0 24 53 0 0 chr13 77450226 77450264 -24422905 + AT_rich Low_complexity Low_complexity 1 38 0 1143 153 0 17 chr13 77450322 77450498 -24422671 - AluJb SINE Alu -10 302 130 1918 180 0 0 chr13 77450547 77450858 -24422311 - AluSx SINE Alu -1 311 1 656 177 7 54 chr13 77450866 77451013 -24422156 - FLAM_C SINE Alu -1 142 3 2051 113 4 0 chr13 77451217 77451492 -24421677 + AluSx SINE Alu 11 286 -26 561 299 73 0 chr13 77453765 77453942 -24419227 + MIR SINE MIR 18 207 -55 1824 120 60 83 chr13 77454375 77454759 -24418410 - THE1C LTR MaLR 0 375 1 277 265 0 36 chr13 77456930 77457013 -24416156 - MLT1I LTR MaLR -39 370 291 348 308 0 10 chr13 77457181 77457285 -24415884 - MLT1H LTR MaLR -304 245 143 1072 183 14 14 chr13 77457520 77457733 -24415436 - MER20 DNA MER1_type -2 217 5 256 352 46 28 chr13 77457773 77457881 -24415288 - MIR SINE MIR -57 151 42 210 304 13 25 chr13 77458187 77458266 -24414903 - L2 LINE L2 -261 3011 2934 473 299 96 48 chr13 77458658 77459032 -24414137 - L2 LINE L2 -693 2621 2230 240 73 109 0 chr13 77460229 77460284 -24412885 + LTR66 LTR ERVL 379 439 -171 421 172 21 0 chr13 77460284 77460377 -24412792 + (TA)n Simple_repeat Simple_repeat 2 96 0 1882 145 7 3 chr13 77460377 77460674 -24412495 - AluSx SINE Alu -14 298 1 22 56 0 0 chr13 77460674 77460710 -24412459 + AT_rich Low_complexity Low_complexity 1 36 0 368 298 19 0 chr13 77462275 77462379 -24410790 - ERVL LTR ERVL -693 5071 4966 797 223 74 106 chr13 77463541 77463918 -24409251 + MLT1A1 LTR MaLR 1 365 0 418 277 206 7 chr13 77463944 77464099 -24409070 + MER5A DNA MER1_type 4 189 0 976 211 10 10 chr13 77465190 77465398 -24407771 - MER6B DNA MER2_type 0 210 3 181 333 52 21 chr13 77465716 77465812 -24407357 + MIR SINE MIR 88 186 -76 191 283 0 0 chr13 77465859 77465912 -24407257 - MIR SINE MIR -14 248 196 222 228 18 0 chr13 77466013 77466070 -24407099 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 309 165 0 202 chr13 77466431 77466540 -24406629 + MER5A DNA MER1_type 19 105 -84 2278 86 0 20 chr13 77466675 77466979 -24406190 - AluSx SINE Alu -14 298 1 2528 158 17 36 chr13 77467113 77467589 -24405580 - LTR24 LTR ERV1 0 467 1 1496 191 119 47 chr13 77468535 77469005 -24404164 - LTR48B LTR ERV1 -11 633 130 6592 104 55 20 chr13 77469874 77470895 -24402274 + MER11C LTR ERVK 1 1057 -14 832 238 135 66 chr13 77472985 77473415 -24399754 - MLT1C LTR MaLR -8 618 1 5601 286 90 29 chr13 77473553 77473699 -24399470 + L2 LINE L2 568 704 -2609 2324 183 36 39 chr13 77473699 77474219 -24398950 - MLT2B1 LTR ERVL 0 520 2 5601 286 90 29 chr13 77474219 77474666 -24398503 + L2 LINE L2 704 1122 -2191 2660 94 13 0 chr13 77474666 77475058 -24398111 - L1MA2 LINE L1 0 6304 5908 5601 286 90 29 chr13 77475058 77475341 -24397828 + L2 LINE L2 1122 1386 -1927 2113 94 0 58 chr13 77475341 77475649 -24397520 - AluSc SINE Alu -17 292 3 5601 286 90 29 chr13 77475649 77475789 -24397380 + L2 LINE L2 1386 1516 -1797 305 23 0 23 chr13 77475789 77475832 -24397337 + (TTA)n Simple_repeat Simple_repeat 2 43 0 5601 286 90 29 chr13 77475832 77477097 -24396072 + L2 LINE L2 1516 2995 -318 2328 95 0 0 chr13 77477210 77477514 -24395655 + AluSx SINE Alu 9 312 0 4185 109 30 12 chr13 77477726 77478389 -24394780 + L1MA2 LINE L1 5630 6304 0 1007 88 27 0 chr13 77479267 77479415 -24393754 - L1MA2 LINE L1 0 6304 6153 215 349 30 30 chr13 77479453 77479622 -24393547 + L2 LINE L2 2722 2890 -424 180 0 0 0 chr13 77479701 77479721 -24393448 + (T)n Simple_repeat Simple_repeat 1 20 0 286 282 97 86 chr13 77480042 77480183 -24392986 - L2 LINE L2 -557 2757 2619 1792 128 4 11 chr13 77480183 77480456 -24392713 + AluSx SINE Alu 34 304 -8 286 282 97 86 chr13 77480456 77480746 -24392423 - L2 LINE L2 -695 2619 2321 205 188 62 47 chr13 77481359 77481423 -24391746 + L2 LINE L2 3170 3234 -79 576 304 186 12 chr13 77481448 77481770 -24391399 + L2 LINE L2 2936 3313 0 344 167 0 0 chr13 77481925 77481985 -24391184 + MER53 DNA DNA 16 75 -114 2207 124 33 30 chr13 77482215 77482578 -24390591 + THE1B LTR MaLR 1 364 0 7471 35 2 0 chr13 77482707 77483856 -24389313 - L1PA4 LINE L1 0 6155 5006 332 357 152 9 chr13 77484168 77484378 -24388791 - MIR SINE MIR -4 258 19 1917 146 0 0 chr13 77484962 77485282 -24387887 + AluSc SINE Alu 1 320 0 411 314 176 14 chr13 77485303 77485593 -24387576 + L1M4 LINE L1 3615 3951 -2195 1644 171 25 0 chr13 77486139 77486413 -24386756 + AluJo SINE Alu 2 282 -30 207 69 0 0 chr13 77486417 77486446 -24386723 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 300 250 90 80 chr13 77487077 77487265 -24385904 - HAL1 LINE L1 -2314 193 4 270 370 76 0 chr13 77487538 77487657 -24385512 - MIR SINE MIR -132 130 3 29 28 0 0 chr13 77487713 77487749 -24385420 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 77488214 77488242 -24384927 + AT_rich Low_complexity Low_complexity 1 28 0 2210 144 16 22 chr13 77488522 77488769 -24384400 - MLT1A1 LTR MaLR 0 365 119 2388 96 25 25 chr13 77488769 77489133 -24384036 - THE1B LTR MaLR 0 364 1 2210 144 16 22 chr13 77489133 77489252 -24383917 - MLT1A1 LTR MaLR -246 119 1 615 353 29 23 chr13 77489598 77489944 -24383225 + L3 LINE CR1 863 1210 -367 201 259 103 0 chr13 77489976 77490034 -24383135 + L3 LINE CR1 1314 1377 -200 254 283 48 83 chr13 77490299 77490444 -24382725 - MIR SINE MIR -118 144 5 23 33 0 0 chr13 77490677 77490707 -24382462 + AT_rich Low_complexity Low_complexity 1 30 0 708 311 25 0 chr13 77491691 77491929 -24381240 - MIR SINE MIR -12 250 7 327 243 16 24 chr13 77492099 77492229 -24380940 - L1P5 LINE L1 -538 5583 5461 24 32 0 0 chr13 77492514 77492545 -24380624 + AT_rich Low_complexity Low_complexity 1 31 0 686 285 78 38 chr13 77492602 77493181 -24379988 - L1MEc LINE L1 -4784 2338 1737 852 283 82 8 chr13 77493185 77493553 -24379616 - L1MEc LINE L1 -4900 1523 1129 268 305 119 35 chr13 77494014 77494417 -24378752 - L1MEc LINE L1 -5956 467 31 894 95 0 68 chr13 77494469 77494617 -24378552 - L1PA10 LINE L1 -9 6159 6022 4343 207 55 25 chr13 77494619 77494817 -24378352 - L1MD2 LINE L1 -9 6350 6159 225 0 0 0 chr13 77494817 77494842 -24378327 + (TG)n Simple_repeat Simple_repeat 2 26 0 4343 207 55 25 chr13 77494842 77494921 -24378248 - L1MD2 LINE L1 -200 6159 6084 2201 122 0 0 chr13 77494921 77495215 -24377954 + AluSx SINE Alu 1 294 -18 4343 207 55 25 chr13 77495215 77496028 -24377141 - L1MD2 LINE L1 -275 6084 5227 811 198 50 40 chr13 77496398 77496600 -24376569 - MER3 DNA MER1_type 0 209 6 436 268 105 0 chr13 77496850 77497003 -24376166 - MIR SINE MIR -15 247 79 252 254 0 16 chr13 77497091 77497154 -24376015 - MLT1D LTR MaLR -313 192 131 2660 82 6 3 chr13 77497239 77497593 -24375576 - THE1A LTR MaLR 0 355 1 11272 105 3 0 chr13 77497608 77499137 -24374032 - THE1A-int LTR MaLR -44 1536 3 2594 91 14 0 chr13 77499139 77499489 -24373680 - THE1A LTR MaLR 0 355 1 809 201 0 7 chr13 77499688 77499827 -24373342 + FRAM SINE Alu 12 149 -27 29 47 0 0 chr13 77499888 77499931 -24373238 + AT_rich Low_complexity Low_complexity 1 43 0 2373 83 0 3 chr13 77500015 77500315 -24372854 - AluY SINE Alu -12 299 1 1769 156 167 14 chr13 77500798 77501169 -24372000 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr13 77501568 77501589 -24371580 + AT_rich Low_complexity Low_complexity 1 21 0 1654 206 32 11 chr13 77501754 77502116 -24371053 + MLT2D LTR ERVL 1 424 -40 354 205 0 0 chr13 77502119 77502197 -24370972 + (TG)n Simple_repeat Simple_repeat 1 78 0 283 80 140 0 chr13 77502197 77502247 -24370922 + MLT2D LTR ERVL 464 520 0 4007 190 59 25 chr13 77503059 77503885 -24369284 - MER21B LTR ERV1 -9 854 1 3511 77 18 8 chr13 77503994 77504486 -24368683 - L1PA6 LINE L1 -13 6141 5645 4028 157 65 16 chr13 77504520 77505306 -24367863 + L1MA9 LINE L1 5459 6282 -30 30 100 0 0 chr13 77505415 77505515 -24367654 + AT_rich Low_complexity Low_complexity 1 100 0 316 204 167 68 chr13 77505591 77505723 -24367446 - MIR3 SINE MIR -32 176 32 29 47 0 0 chr13 77505891 77505934 -24367235 + AT_rich Low_complexity Low_complexity 1 43 0 1816 162 55 25 chr13 77508152 77508516 -24364653 - THE1C LTR MaLR 0 375 1 8674 139 12 89 chr13 77508516 77510225 -24362944 - THE1C-int LTR MaLR 0 1580 3 1634 176 55 25 chr13 77510227 77510591 -24362578 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr13 77510827 77510856 -24362313 + AT_rich Low_complexity Low_complexity 1 29 0 348 354 105 0 chr13 77510944 77511173 -24361996 + MIR SINE MIR 8 260 -2 404 280 131 42 chr13 77511818 77511986 -24361183 - MER63A DNA MER1_type -1 209 27 21 57 0 0 chr13 77512357 77512392 -24360777 + AT_rich Low_complexity Low_complexity 1 35 0 1742 134 7 34 chr13 77514144 77514464 -24358705 + AluJb SINE Alu 1 312 0 209 313 78 0 chr13 77515919 77515983 -24357186 + MIR SINE MIR 81 149 -113 206 391 107 26 chr13 77516240 77516329 -24356840 + L2 LINE L2 2459 2539 -733 212 0 36 0 chr13 77516329 77516357 -24356812 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 206 391 107 26 chr13 77516357 77516832 -24356337 + L2 LINE L2 2539 3070 -202 198 103 0 0 chr13 77517074 77517103 -24356066 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1163 265 106 3 chr13 77517715 77518073 -24355096 + L1MB8 LINE L1 16 410 -6132 854 163 57 110 chr13 77518073 77518319 -24354850 - MLT1B LTR MaLR -60 330 98 362 200 88 0 chr13 77518319 77518399 -24354770 + MLT1C LTR MaLR 379 465 -2 2928 224 53 17 chr13 77518408 77519428 -24353741 + L1MB8 LINE L1 3282 4338 -2306 1167 199 13 8 chr13 77519412 77519648 -24353521 + L1MB8 LINE L1 6117 6353 -329 * 2222 91 0 23 chr13 77520142 77520449 -24352720 - AluY SINE Alu -11 300 1 365 141 42 58 chr13 77520449 77520503 -24352666 - Alu SINE Alu -302 0 1 327 243 45 36 chr13 77520522 77520744 -24352425 + LTR37B LTR ERV1 245 468 0 606 281 79 79 chr13 77520821 77521187 -24351982 - MLT1K LTR MaLR -28 560 195 23 0 0 0 chr13 77521400 77521423 -24351746 + AT_rich Low_complexity Low_complexity 1 23 0 1195 232 76 0 chr13 77521633 77521922 -24351247 + MER110 LTR ERV1 46 356 -135 1088 189 44 37 chr13 77521925 77522195 -24350974 + L1MB8 LINE L1 6395 6666 -10 234 186 34 0 chr13 77522558 77522617 -24350552 + L1MB7 LINE L1 6115 6175 -9 22 0 0 0 chr13 77522756 77522778 -24350391 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 77523375 77523396 -24349773 + AT_rich Low_complexity Low_complexity 1 21 0 1985 135 3 16 chr13 77524249 77524423 -24348746 - AluSp SINE Alu -6 307 137 2473 62 0 0 chr13 77524423 77524728 -24348441 - AluY SINE Alu -6 305 1 1985 135 3 16 chr13 77524728 77524864 -24348305 - AluSp SINE Alu -176 137 1 21 36 0 0 chr13 77525821 77525849 -24347320 + AT_rich Low_complexity Low_complexity 1 28 0 2046 222 83 17 chr13 77526280 77526812 -24346357 - MLT1F1 LTR MaLR 0 567 1 1213 216 14 11 chr13 77527109 77527387 -24345782 - L1MB1 LINE L1 -3 6165 5887 21 36 0 0 chr13 77528080 77528108 -24345061 + AT_rich Low_complexity Low_complexity 1 28 0 425 348 97 39 chr13 77528243 77528812 -24344357 - L2 LINE L2 -448 2866 2265 7929 211 45 9 chr13 77528840 77530561 -24342608 + L1MC1 LINE L1 3246 5119 -1214 2000 144 13 0 chr13 77530561 77530859 -24342310 + AluSq SINE Alu 1 302 -11 7929 211 45 9 chr13 77530859 77532098 -24341071 + L1MC1 LINE L1 5119 6313 -20 392 342 22 38 chr13 77532218 77532264 -24340905 + MIR SINE MIR 79 124 -138 2166 130 49 0 chr13 77532264 77532611 -24340558 + THE1B LTR MaLR 1 364 0 392 342 22 38 chr13 77532611 77532748 -24340421 + MIR SINE MIR 124 259 -3 3616 111 0 4 chr13 77533933 77534446 -24338723 - MER9 LTR ERVK 0 511 1 588 200 10 120 chr13 77534454 77534654 -24338515 + MER104 DNA Tc2 3 180 0 317 226 6 17 chr13 77535821 77536002 -24337167 + (CA)n Simple_repeat Simple_repeat 2 180 0 923 137 43 0 chr13 77536623 77536784 -24336385 - L1MD1 LINE L1 0 6242 6075 833 141 104 6 chr13 77537032 77537195 -24335974 + LTR47A LTR ERVL 261 439 -13 2275 130 14 27 chr13 77537195 77537564 -24335605 - THE1B LTR MaLR 0 364 1 1436 194 103 21 chr13 77537581 77537911 -24335258 - L1MD2 LINE L1 -279 6080 5724 1407 70 5 0 chr13 77537914 77538099 -24335070 + L1PB1 LINE L1 5606 5791 -360 185 178 22 0 chr13 77538099 77538144 -24335025 + (TA)n Simple_repeat Simple_repeat 1 46 0 * 243 103 0 0 chr13 77538143 77538182 -24334987 + (CA)n Simple_repeat Simple_repeat 2 40 0 2610 95 3 3 chr13 77538182 77538551 -24334618 + L1PB1 LINE L1 5782 6150 -1 1720 203 11 10 chr13 77538565 77538964 -24334205 - L1MD2 LINE L1 -459 5662 5313 1357 296 21 4 chr13 77539478 77539957 -24333212 - MER110 LTR ERV1 0 491 5 681 246 16 16 chr13 77539959 77540142 -24333027 + LTR41 LTR ERVL 15 197 -576 591 227 45 90 chr13 77540347 77540624 -24332545 + LTR41 LTR ERVL 511 795 0 979 328 58 39 chr13 77540923 77542189 -24330980 + ERVL LTR ERVL 352 1712 -4052 1796 311 69 33 chr13 77542359 77543200 -24329969 + ERVL LTR ERVL 1706 2576 -3188 300 238 9 95 chr13 77543218 77543323 -24329846 + ERVL LTR ERVL 2382 2477 -3287 243 0 0 0 chr13 77543761 77543788 -24329381 + (A)n Simple_repeat Simple_repeat 1 27 0 1175 126 224 55 chr13 77544036 77544291 -24328878 - AluSg SINE Alu -2 298 1 28 29 0 0 chr13 77546446 77546481 -24326688 + AT_rich Low_complexity Low_complexity 1 35 0 2091 124 0 0 chr13 77546579 77546862 -24326307 - AluSx SINE Alu -29 283 1 1437 232 50 34 chr13 77547298 77547750 -24325419 - MLT1C LTR MaLR -2 465 1 2130 108 7 3 chr13 77547856 77548153 -24325016 + AluSc SINE Alu 1 298 -11 1554 144 54 90 chr13 77549393 77549782 -24323387 + THE1C LTR MaLR 1 375 0 547 229 166 13 chr13 77549799 77549956 -24323213 + MER5A DNA MER1_type 4 184 -5 1844 163 20 7 chr13 77550317 77550623 -24322546 - AluSx SINE Alu -2 310 1 685 218 38 50 chr13 77550900 77551139 -24322030 - MER106A DNA MER1_type 0 236 1 1323 194 35 51 chr13 77551184 77551555 -24321614 + MLT1A1 LTR MaLR 1 365 0 1011 175 101 14 chr13 77551843 77552060 -24321109 + MER46A DNA MER2_type 1 236 0 198 298 18 18 chr13 77552192 77552249 -24320920 - MIR SINE MIR -158 104 48 1516 132 0 5 chr13 77553081 77553300 -24319869 + AluSg/x SINE Alu 68 285 -27 306 237 0 0 chr13 77553300 77553376 -24319793 + (TA)n Simple_repeat Simple_repeat 1 76 0 239 260 0 83 chr13 77553381 77553477 -24319692 - L1MC4 LINE L1 -1339 6703 6616 284 289 0 0 chr13 77553497 77553587 -24319582 - L1MC4 LINE L1 -1339 6703 6614 326 250 23 0 chr13 77553601 77553689 -24319480 + L1MC4 LINE L1 6614 6703 -1339 254 326 0 0 chr13 77553626 77553715 -24319454 - L1MC4 LINE L1 -1340 6702 6614 * 254 322 0 0 chr13 77553747 77553837 -24319332 - L1MC4 LINE L1 -1339 6703 6614 202 222 0 0 chr13 77553837 77553873 -24319296 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 2077 183 31 17 chr13 77553918 77554338 -24318831 - MSTB LTR MaLR 0 426 1 185 200 33 0 chr13 77555447 77555507 -24317662 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 243 248 106 97 chr13 77555783 77555896 -24317273 + MIR SINE MIR 32 145 -63 237 333 58 36 chr13 77556437 77556575 -24316594 + MER5B DNA MER1_type 1 141 -37 1519 172 60 30 chr13 77557635 77557967 -24315202 + L1MA8 LINE L1 5949 6290 -1 3037 200 16 2 chr13 77559411 77559966 -24313203 + MLT1F1 LTR MaLR 1 563 -4 180 0 0 0 chr13 77560246 77560266 -24312903 + (TA)n Simple_repeat Simple_repeat 2 21 0 1849 158 3 3 chr13 77560336 77560634 -24312535 + AluJb SINE Alu 1 298 -14 1974 103 7 0 chr13 77561191 77561464 -24311705 - AluSg SINE Alu -2 308 34 2150 102 0 0 chr13 77561637 77561922 -24311247 - AluY SINE Alu -26 285 1 21 57 0 0 chr13 77561938 77561973 -24311196 + AT_rich Low_complexity Low_complexity 1 35 0 2399 126 25 0 chr13 77562402 77562767 -24310402 - THE1C LTR MaLR 0 375 2 204 67 0 0 chr13 77563364 77563394 -24309775 + (CA)n Simple_repeat Simple_repeat 1 30 0 192 77 0 0 chr13 77563987 77564013 -24309156 + (CAA)n Simple_repeat Simple_repeat 2 27 0 827 284 81 38 chr13 77564152 77564303 -24308866 + L1ME3 LINE L1 3796 3939 -2207 1676 154 44 0 chr13 77564303 77564599 -24308570 + AluSx SINE Alu 1 308 0 827 284 81 38 chr13 77564599 77564943 -24308226 + L1ME3 LINE L1 3939 4313 -1833 409 249 17 52 chr13 77565136 77565309 -24307860 + L1ME3 LINE L1 4572 4738 -1408 1868 164 71 7 chr13 77565475 77565845 -24307324 + MLT1B LTR MaLR 1 500 -5 1747 269 115 32 chr13 77566036 77566156 -24307013 + L1ME3 LINE L1 5039 5148 -1014 2129 98 7 7 chr13 77566156 77566451 -24306718 - AluSq SINE Alu -18 295 1 1747 269 115 32 chr13 77566451 77567261 -24305908 + L1ME3 LINE L1 5148 6044 -118 522 123 0 0 chr13 77567506 77567579 -24305590 + HY4 scRNA scRNA 1 73 -20 24 0 0 0 chr13 77567609 77567633 -24305536 + AT_rich Low_complexity Low_complexity 1 24 0 1638 138 150 6 chr13 77567917 77568072 -24305097 - THE1C LTR MaLR -1 374 243 564 15 0 0 chr13 77568072 77568137 -24305032 + (TA)n Simple_repeat Simple_repeat 1 65 0 285 29 0 0 chr13 77568136 77568170 -24304999 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 1638 138 150 6 chr13 77568137 77568341 -24304828 - THE1C LTR MaLR -132 243 1 334 319 29 0 chr13 77569926 77570075 -24303094 + MIR SINE MIR 45 197 -65 238 229 84 24 chr13 77570578 77570661 -24302508 + L2 LINE L2 1816 1903 -1411 188 314 23 12 chr13 77571028 77571114 -24302055 + L2 LINE L2 2561 2647 -667 29 60 0 0 chr13 77571605 77571655 -24301514 + AT_rich Low_complexity Low_complexity 1 50 0 609 259 161 5 chr13 77572460 77572665 -24300504 + MIR SINE MIR 6 242 -20 3118 248 17 18 chr13 77572861 77573902 -24299267 - L1PA12 LINE L1 -4349 3235 2182 339 268 0 0 chr13 77574134 77574231 -24298938 - L1PA12 LINE L1 -5399 2182 2086 992 322 56 44 chr13 77574333 77574963 -24298206 - L1PA12 LINE L1 -6150 1424 788 1550 190 31 0 chr13 77576251 77576540 -24296629 - AluJo SINE Alu -12 300 3 542 14 0 28 chr13 77576542 77576614 -24296555 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 1873 115 33 4 chr13 77576616 77576886 -24296283 - AluSc SINE Alu -31 278 1 318 239 34 39 chr13 77576917 77577122 -24296047 - L1MEc LINE L1 -3129 3086 2883 592 306 77 29 chr13 77577156 77577466 -24295703 + L2 LINE L2 1604 1928 -1386 944 248 65 52 chr13 77577476 77577944 -24295225 - L1MEc LINE L1 -3551 2664 2232 2694 259 62 12 chr13 77577992 77578845 -24294324 - L1MEc LINE L1 -5465 931 36 26 30 0 0 chr13 77579910 77579943 -24293226 + AT_rich Low_complexity Low_complexity 1 33 0 21 89 0 0 chr13 77580202 77580258 -24292911 + AT_rich Low_complexity Low_complexity 1 56 0 480 160 50 10 chr13 77580612 77580712 -24292457 - L1PB3 LINE L1 0 6154 6051 2087 118 0 7 chr13 77581506 77581793 -24291376 - AluSg1 SINE Alu -24 285 1 396 0 0 0 chr13 77581878 77581922 -24291247 + (GA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr13 77581921 77581941 -24291228 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 541 122 0 0 chr13 77581989 77582063 -24291106 + AluY SINE Alu 217 290 -21 313 115 0 0 chr13 77582063 77582124 -24291045 + L1MA9 LINE L1 6252 6312 0 497 91 0 0 chr13 77582193 77582259 -24290910 - Alu SINE Alu -24 286 221 3594 117 27 0 chr13 77583006 77583519 -24289650 + MER1A DNA MER1_type 1 527 0 19894 26 0 0 chr13 77585523 77588659 -24284510 - L1PA2 LINE L1 0 6155 3021 198 283 33 17 chr13 77589901 77589961 -24283208 - L2 LINE L2 -51 3221 3161 1301 256 110 10 chr13 77591132 77591522 -24281647 - MER70B LTR ERVL -146 432 4 481 275 44 19 chr13 77594532 77594692 -24278477 + MIR SINE MIR 29 192 -70 2016 154 54 14 chr13 77594737 77595087 -24278082 - THE1B LTR MaLR 0 364 1 512 303 148 33 chr13 77595210 77595732 -24277437 - L2 LINE L2 -913 2401 1820 1598 209 3 13 chr13 77595901 77596203 -24276966 - AluJb SINE Alu -13 299 1 288 293 0 0 chr13 77596515 77596590 -24276579 + (TCCA)n Simple_repeat Simple_repeat 3 77 0 583 309 14 34 chr13 77596874 77597081 -24276088 - MLT1J LTR MaLR -239 272 70 269 393 67 32 chr13 77598654 77598967 -24274202 - L2 LINE L2 0 3272 2949 300 172 0 0 chr13 77599193 77599251 -24273918 + CT-rich Low_complexity Low_complexity 3 60 0 257 254 60 0 chr13 77599274 77599341 -24273828 - L2 LINE L2 -52 3261 3191 1595 196 53 6 chr13 77599348 77599669 -24273500 - MER58B DNA MER1_type -5 336 1 533 259 41 66 chr13 77600289 77600486 -24272683 + MIR SINE MIR 45 236 -26 238 210 32 0 chr13 77600505 77600567 -24272602 + (CTA)n Simple_repeat Simple_repeat 1 64 0 234 352 117 21 chr13 77601524 77601669 -24271500 + MIR SINE MIR 89 247 -15 412 290 173 0 chr13 77602838 77603000 -24270169 + MLT1K LTR MaLR 3 192 -396 2164 150 56 25 chr13 77603299 77603334 -24269835 - MLT2A2 LTR ERVL 0 554 522 279 0 0 0 chr13 77603334 77603365 -24269804 + (TA)n Simple_repeat Simple_repeat 2 32 0 2164 150 56 25 chr13 77603365 77603852 -24269317 - MLT2A2 LTR ERVL -32 522 1 1655 227 51 42 chr13 77604860 77605354 -24267815 - LTR55 LTR ERV -50 498 1 766 297 129 46 chr13 77605832 77606761 -24266408 + L1M4 LINE L1 2327 3332 -2814 203 293 102 41 chr13 77608252 77608399 -24264770 + MIR SINE MIR 35 190 -72 2746 50 0 47 chr13 77608583 77608949 -24264220 - L1PA5 LINE L1 0 6154 5831 2909 9 0 0 chr13 77608949 77609267 -24263902 - AluYb8 SINE Alu 0 318 1 2746 50 0 47 chr13 77609267 77609313 -24263856 - L1PA5 LINE L1 -323 5831 5784 544 96 0 4 chr13 77609313 77609396 -24263773 + L1ME LINE L1 5514 5594 -568 25 65 0 0 chr13 77609928 77609974 -24263195 + AT_rich Low_complexity Low_complexity 1 46 0 301 136 30 0 chr13 77610412 77610478 -24262691 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 300 310 52 45 chr13 77610514 77610669 -24262500 + MIR SINE MIR 6 161 -101 350 248 204 9 chr13 77610709 77610822 -24262347 - MER5A DNA MER1_type 0 189 55 217 241 48 36 chr13 77611099 77611182 -24261987 - MIR3 SINE MIR -20 188 105 23 0 0 0 chr13 77611273 77611296 -24261873 + AT_rich Low_complexity Low_complexity 1 23 0 2056 135 0 0 chr13 77611298 77611586 -24261583 + AluSq SINE Alu 1 288 -25 198 128 0 0 chr13 77612762 77612801 -24260368 + (T)n Simple_repeat Simple_repeat 1 39 0 21 71 0 0 chr13 77616082 77616124 -24257045 + AT_rich Low_complexity Low_complexity 1 42 0 303 322 35 7 chr13 77617173 77617316 -24255853 - HAL1b LINE L1 -11 1337 1191 535 209 85 48 chr13 77617707 77617933 -24255236 - L1M4 LINE L1 -1481 4665 4432 23 0 0 0 chr13 77617975 77617998 -24255171 + AT_rich Low_complexity Low_complexity 1 23 0 254 177 0 16 chr13 77618336 77618398 -24254771 + (TG)n Simple_repeat Simple_repeat 2 62 0 1379 199 33 29 chr13 77618612 77618919 -24254250 + AluJo SINE Alu 3 310 -2 2126 152 0 0 chr13 77620293 77620603 -24252566 - AluSx SINE Alu -2 310 1 413 338 116 9 chr13 77621696 77621921 -24251248 - MIR SINE MIR -13 249 1 2872 103 30 0 chr13 77622093 77622607 -24250562 + L1PA10 LINE L1 5159 5683 -485 1109 71 21 0 chr13 77622610 77622750 -24250419 + AluSg/x SINE Alu 157 299 -13 3330 77 10 38 chr13 77622747 77622983 -24250186 + L1PA10 LINE L1 5677 5894 -274 2293 52 0 4 chr13 77622983 77623304 -24249865 + AluY SINE Alu 1 282 -29 3330 77 10 38 chr13 77623304 77623561 -24249608 + L1PA10 LINE L1 5894 6157 -11 488 288 81 40 chr13 77624232 77624628 -24248541 - L2 LINE L2 -1098 2216 1805 605 221 13 7 chr13 77625334 77625487 -24247682 + MER33 DNA MER1_type 51 204 -120 1667 198 128 16 chr13 77625487 77625861 -24247308 - MLT1C LTR MaLR 0 467 52 333 100 20 0 chr13 77625945 77625995 -24247174 - MLT1C LTR MaLR -416 51 1 532 152 76 0 chr13 77625995 77626100 -24247069 + MER33 DNA MER1_type 200 312 -12 495 280 218 1 chr13 77626117 77626323 -24246846 - MIR SINE MIR 0 262 15 549 281 88 0 chr13 77627688 77627859 -24245310 - MER5A DNA MER1_type -3 186 1 31 26 0 0 chr13 77628436 77628474 -24244695 + AT_rich Low_complexity Low_complexity 1 38 0 393 22 0 0 chr13 77629004 77629050 -24244119 + (TG)n Simple_repeat Simple_repeat 1 46 0 734 304 39 26 chr13 77629360 77629818 -24243351 + LTR16B LTR ERVL 1 464 0 254 333 0 0 chr13 77630126 77630192 -24242977 - L2 LINE L2 -1 3312 3247 345 287 33 27 chr13 77630490 77630640 -24242529 - L1ME4a LINE L1 -25 6096 5946 238 298 71 12 chr13 77630695 77630779 -24242390 - L2 LINE L2 -19 3294 3206 248 304 119 53 chr13 77630801 77630835 -24242334 + MIR SINE MIR 2 32 -230 2532 115 3 8 chr13 77630835 77631210 -24241959 + THE1C LTR MaLR 3 375 0 248 304 119 53 chr13 77631210 77631418 -24241751 + MIR SINE MIR 32 260 -2 1092 250 60 60 chr13 77631853 77632317 -24240852 - L1MD2 LINE L1 0 6359 5896 182 36 0 36 chr13 77632457 77632485 -24240684 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr13 77632687 77632709 -24240460 + (T)n Simple_repeat Simple_repeat 1 22 0 2213 105 7 0 chr13 77633375 77633671 -24239498 + AluSp SINE Alu 2 299 -14 183 255 39 0 chr13 77633884 77633935 -24239234 - MER5A DNA MER1_type -50 139 87 3687 186 49 6 chr13 77634009 77634706 -24238463 - MER44D DNA MER2_type -5 600 2 2071 206 84 11 chr13 77634799 77635261 -24237908 + LTR44 LTR ERV1 24 519 0 1880 80 19 0 chr13 77635261 77635525 -24237644 + L1MA1 LINE L1 5945 6213 -89 469 233 33 43 chr13 77635721 77635929 -24237240 - L1MA10 LINE L1 -1 6331 5976 21 36 0 0 chr13 77636443 77636471 -24236698 + AT_rich Low_complexity Low_complexity 1 28 0 332 309 14 65 chr13 77638775 77638914 -24234255 - L2 LINE L2 -1 3271 3140 358 298 126 85 chr13 77639009 77639321 -24233848 - L2 LINE L2 -557 2757 2412 934 188 52 28 chr13 77639321 77639534 -24233635 + MER20 DNA MER1_type 1 218 -1 358 298 126 85 chr13 77639534 77639752 -24233417 - L2 LINE L2 -902 2412 2205 21 0 0 0 chr13 77639799 77639820 -24233349 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 77640000 77640048 -24233121 + AT_rich Low_complexity Low_complexity 1 48 0 211 309 62 34 chr13 77640626 77640792 -24232377 + L2 LINE L2 2793 2960 -353 408 216 0 23 chr13 77641693 77641781 -24231388 + MLT1F1 LTR MaLR 25 110 -483 2001 196 31 8 chr13 77641802 77642287 -24230882 - MER89 LTR ERV1 0 559 1 976 244 107 3 chr13 77642289 77642580 -24230589 + MLT1F1 LTR MaLR 247 567 0 319 237 195 0 chr13 77642844 77642962 -24230207 - L2 LINE L2 -14 3299 3159 749 343 89 0 chr13 77643456 77643911 -24229258 - L2 LINE L2 -141 3172 2679 1844 249 40 18 chr13 77643912 77644463 -24228706 - L2 LINE L2 -1012 2302 1740 1623 189 3 22 chr13 77645387 77645700 -24227469 - AluJo SINE Alu -5 307 1 552 248 0 0 chr13 77645791 77645912 -24227257 - FLAM_A SINE Alu -12 121 1 2290 74 0 10 chr13 77647442 77647741 -24225428 - AluY SINE Alu -15 296 1 240 268 236 45 chr13 77647859 77648016 -24225153 - L3 LINE CR1 -5 1572 1386 229 315 45 15 chr13 77648455 77648655 -24224514 - L1M4 LINE L1 -1542 4604 4399 442 299 151 3 chr13 77648839 77649197 -24223972 - L1M4 LINE L1 -1981 4165 3755 286 299 208 13 chr13 77650133 77650287 -24222882 + MER91A DNA MER1_type 5 188 -8 181 234 43 0 chr13 77650316 77650363 -24222806 + MIR SINE MIR 96 144 -64 1020 121 0 0 chr13 77653275 77653432 -24219737 - L1PA8A LINE L1 -1757 4389 4233 6192 85 10 11 chr13 77653432 77655166 -24218003 + L1PA8A LINE L1 4408 6131 0 30 0 0 0 chr13 77655604 77655634 -24217535 + AT_rich Low_complexity Low_complexity 1 30 0 203 273 0 0 chr13 77655766 77655810 -24217359 + CT-rich Low_complexity Low_complexity 2 45 0 815 216 40 0 chr13 77656090 77656266 -24216903 + MLT2B1 LTR ERVL 3 185 -335 478 222 0 28 chr13 77656314 77656458 -24216711 + (CATATA)n Simple_repeat Simple_repeat 5 144 0 238 224 17 0 chr13 77656468 77656526 -24216643 + L1MC4 LINE L1 2006 2064 -4362 * 257 215 9 24 chr13 77656525 77656625 -24216544 + L1MC4 LINE L1 2006 6983 -1339 207 111 28 0 chr13 77656625 77656661 -24216508 + (TA)n Simple_repeat Simple_repeat 2 38 0 2194 119 0 0 chr13 77657997 77658307 -24214862 - AluSx SINE Alu -2 310 1 21 0 0 0 chr13 77660598 77660619 -24212550 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr13 77661105 77661136 -24212033 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 514 75 0 0 chr13 77661136 77661203 -24211966 - L1PA7 LINE L1 -16 6138 6072 4523 215 101 30 chr13 77661414 77662109 -24211060 + Charlie1a DNA MER1_type 1 646 -2115 2155 116 0 0 chr13 77662109 77662412 -24210757 + AluSg SINE Alu 1 303 -7 4523 215 101 30 chr13 77662412 77663075 -24210094 + Charlie1a DNA MER1_type 646 1455 0 407 312 22 7 chr13 77663370 77663508 -24209661 + L2 LINE L2 220 359 -2955 533 261 28 14 chr13 77663981 77664123 -24209046 + MIR SINE MIR 15 158 -104 212 342 44 26 chr13 77664173 77664287 -24208882 + MIR SINE MIR 147 262 0 467 305 20 7 chr13 77664302 77664453 -24208716 - MIR SINE MIR -15 247 95 258 272 146 70 chr13 77664691 77664849 -24208320 - MIR SINE MIR -66 196 27 21 0 0 0 chr13 77664863 77664884 -24208285 + AT_rich Low_complexity Low_complexity 1 21 0 1349 254 73 29 chr13 77664902 77665379 -24207790 + MLT1D LTR MaLR 1 498 -7 2214 313 119 21 chr13 77665631 77667026 -24206143 + L2 LINE L2 1547 3073 -240 910 191 75 15 chr13 77667032 77667062 -24206107 + AluJb SINE Alu 86 113 -199 261 0 0 0 chr13 77667062 77667091 -24206078 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 910 191 75 15 chr13 77667091 77667259 -24205910 + AluJb SINE Alu 113 296 -16 391 306 167 19 chr13 77667452 77667668 -24205501 + L2 LINE L2 3066 3313 0 26 30 0 0 chr13 77668161 77668194 -24204975 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr13 77668980 77669030 -24204139 + AT_rich Low_complexity Low_complexity 1 50 0 1455 219 0 4 chr13 77670554 77670833 -24202336 - Tigger3b DNA MER2_type 0 1231 954 1368 184 4 36 chr13 77670837 77671114 -24202055 + AluJo SINE Alu 21 288 -24 492 48 0 0 chr13 77671116 77671179 -24201990 + (TA)n Simple_repeat Simple_repeat 1 63 0 5248 120 62 23 chr13 77671201 77672115 -24201054 - Tigger3b DNA MER2_type -281 950 1 279 286 59 59 chr13 77673207 77673326 -24199843 + MER5A DNA MER1_type 40 158 -31 28 29 0 0 chr13 77673854 77673889 -24199280 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr13 77674399 77674422 -24198747 + AT_rich Low_complexity Low_complexity 1 23 0 2101 136 0 7 chr13 77674573 77674881 -24198288 - AluSx SINE Alu -4 308 3 441 347 23 23 chr13 77676027 77676243 -24196926 + MIR SINE MIR 14 229 -33 943 91 16 0 chr13 77676726 77676847 -24196322 - AluSp SINE Alu -189 124 2 300 353 139 23 chr13 77676966 77677139 -24196030 - MER91A DNA MER1_type 0 196 4 2136 107 7 7 chr13 77677315 77677614 -24195555 - AluY SINE Alu -12 299 1 429 307 63 24 chr13 77678815 77679020 -24194149 + MIR SINE MIR 12 224 -38 2272 104 3 0 chr13 77679083 77679380 -24193789 - AluSg SINE Alu -12 298 1 24 32 0 0 chr13 77679439 77679470 -24193699 + AT_rich Low_complexity Low_complexity 1 31 0 2050 97 0 4 chr13 77679838 77680105 -24193064 - AluSg SINE Alu -9 301 36 353 299 87 52 chr13 77682436 77682667 -24190502 - L3 LINE CR1 -149 1428 1190 7612 164 88 46 chr13 77683040 77683489 -24189680 - L1MA9 LINE L1 -34 6278 5849 318 67 0 0 chr13 77683489 77683534 -24189635 + (TG)n Simple_repeat Simple_repeat 2 46 0 7612 164 88 46 chr13 77683534 77685909 -24187260 - L1MA9 LINE L1 -463 5849 3329 1323 231 33 38 chr13 77685917 77686316 -24186853 - L1MA9 LINE L1 -3491 2655 2259 2284 113 0 3 chr13 77687808 77688119 -24185050 - AluSg SINE Alu 0 310 1 381 286 57 23 chr13 77688255 77688517 -24184652 + LTR37B LTR ERV1 197 467 -1 2514 186 36 28 chr13 77689078 77689282 -24183887 + L1MB7 LINE L1 5277 5478 -700 1725 186 10 0 chr13 77689282 77689588 -24183581 + AluJo SINE Alu 1 309 -3 2514 186 36 28 chr13 77689588 77689963 -24183206 + L1MB7 LINE L1 5478 5861 -317 1259 199 64 90 chr13 77689964 77690340 -24182829 - MER93b LTR ERV1 -7 366 1 1508 162 17 20 chr13 77690346 77690648 -24182521 + L1MB7 LINE L1 5876 6176 -8 265 211 28 56 chr13 77691010 77691081 -24182088 - L2 LINE L2 0 3313 3245 523 355 90 39 chr13 77691112 77691701 -24181468 + L2 LINE L2 2614 3211 -61 198 378 0 0 chr13 77691765 77691839 -24181330 + L2 LINE L2 2589 2662 -652 5086 50 3 6 chr13 77692922 77693559 -24179610 + L1PA6 LINE L1 5520 6154 0 513 191 0 0 chr13 77694239 77694344 -24178825 + (TG)n Simple_repeat Simple_repeat 2 106 0 1978 129 0 0 chr13 77694849 77695129 -24178040 + AluSx SINE Alu 1 280 -32 267 31 0 0 chr13 77695129 77695161 -24178008 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 306 312 209 5 chr13 77695574 77695789 -24177380 + L2 LINE L2 2287 2545 -769 362 336 43 51 chr13 77696132 77696525 -24176644 + L1ME4a LINE L1 5608 5997 -124 2231 185 8 60 chr13 77696712 77697225 -24175944 - MER66B LTR ERV1 0 486 1 1602 203 0 17 chr13 77697688 77697711 -24175458 - AluJo SINE Alu -16 296 274 279 0 0 0 chr13 77697711 77697742 -24175427 + (TC)n Simple_repeat Simple_repeat 2 32 0 1602 203 0 17 chr13 77697742 77698019 -24175150 - AluJo SINE Alu -38 274 1 241 246 149 51 chr13 77698099 77698557 -24174612 - L1ME LINE L1 -408 5754 5258 2288 93 7 0 chr13 77699504 77699795 -24173374 - AluSq SINE Alu -20 293 1 2206 89 0 0 chr13 77700040 77700350 -24172819 - AluY SINE Alu 0 310 1 240 35 0 0 chr13 77701003 77701032 -24172137 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 225 409 24 8 chr13 77701232 77701359 -24171810 + L2 LINE L2 42 170 -3144 241 333 10 10 chr13 77701413 77701512 -24171657 + L2 LINE L2 819 917 -2397 1545 299 89 76 chr13 77702065 77702986 -24170183 + L2 LINE L2 1700 2607 -706 767 40 0 10 chr13 77702986 77703086 -24170083 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 2009 138 0 0 chr13 77703093 77703376 -24169793 - AluSq SINE Alu -30 283 1 1545 299 89 76 chr13 77703376 77703995 -24169174 + L2 LINE L2 2612 3303 -10 249 263 0 0 chr13 77704524 77704581 -24168588 + CT-rich Low_complexity Low_complexity 5 61 0 22 0 0 0 chr13 77705098 77705120 -24168049 + AT_rich Low_complexity Low_complexity 1 22 0 1891 140 6 32 chr13 77706514 77706829 -24166340 + AluJb SINE Alu 6 312 0 245 250 0 17 chr13 77707765 77707825 -24165344 - MIR SINE MIR -110 152 94 187 374 116 23 chr13 77708117 77708470 -24164699 + L2 LINE L2 2462 2847 -467 206 346 68 30 chr13 77709375 77709508 -24163661 + L2 LINE L2 3175 3312 -1 390 369 17 0 chr13 77709543 77709719 -24163450 - MIR3 SINE MIR -7 201 23 440 193 42 113 chr13 77710801 77711013 -24162156 + MER3 DNA MER1_type 10 206 -3 1073 343 58 10 chr13 77711943 77712524 -24160645 - ERVL LTR ERVL -1811 3953 3345 373 356 100 8 chr13 77712608 77712858 -24160311 - ERVL LTR ERVL -2529 3125 2853 1131 270 34 17 chr13 77713040 77713396 -24159773 - ERVL LTR ERVL -3052 2602 2241 236 89 0 22 chr13 77713437 77713482 -24159687 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 10988 104 12 4 chr13 77713483 77715074 -24158095 - L1PA8 LINE L1 -25 6147 4539 2029 105 14 0 chr13 77715074 77715375 -24157794 - AluSg SINE Alu 0 305 1 10988 104 12 4 chr13 77715375 77716229 -24156940 - L1PA8 LINE L1 -1633 4539 3693 747 306 68 9 chr13 77716242 77716668 -24156501 - ERVL LTR ERVL -3523 2241 1704 456 240 91 40 chr13 77716679 77716854 -24156315 - HAL1 LINE L1 -1415 1092 909 300 341 83 28 chr13 77717097 77717493 -24155676 - L1 LINE L1 -1055 5091 4674 24 32 0 0 chr13 77718107 77718138 -24155031 + AT_rich Low_complexity Low_complexity 1 31 0 656 148 65 51 chr13 77718676 77718893 -24154276 - LTR54B LTR ERV1 -1 497 278 216 0 0 0 chr13 77718893 77718917 -24154252 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1024 73 0 0 chr13 77718924 77719048 -24154121 + AluY SINE Alu 159 282 -29 932 124 222 34 chr13 77719048 77719282 -24153887 - LTR54B LTR ERV1 -220 278 1 1250 226 112 55 chr13 77719767 77720310 -24152859 - MER34C LTR ERV1 0 585 12 384 285 70 40 chr13 77720415 77720787 -24152382 - L1MEc LINE L1 -4102 2294 1912 226 260 143 0 chr13 77720959 77721036 -24152133 - L1MEc LINE L1 -4710 1686 1599 273 318 95 8 chr13 77721189 77721315 -24151854 + LTR16A1 LTR ERVL 2 138 -319 2208 220 74 8 chr13 77721325 77721826 -24151343 - MLT1F LTR MaLR -2 540 7 917 195 123 38 chr13 77721888 77722149 -24151020 + LTR16A1 LTR ERVL 170 452 -5 25 51 0 0 chr13 77728671 77728710 -24144459 + AT_rich Low_complexity Low_complexity 1 39 0 549 268 38 25 chr13 77729895 77730052 -24143117 + MER5B DNA MER1_type 1 159 -19 216 211 19 58 chr13 77730052 77730104 -24143065 + L3 LINE CR1 1510 1559 -18 337 326 58 84 chr13 77730474 77730821 -24142348 - L2 LINE L2 -8 3264 2927 3357 99 31 10 chr13 77730984 77731507 -24141662 - L1PB4 LINE L1 0 6156 5623 1288 118 37 0 chr13 77731537 77731751 -24141418 - L1P5 LINE L1 -497 5659 5438 2061 113 3 14 chr13 77731768 77732060 -24141109 - AluSx SINE Alu -23 289 1 2196 73 66 0 chr13 77732624 77732912 -24140257 - AluSp SINE Alu -6 307 1 843 329 16 12 chr13 77733289 77733611 -24139558 - MLT1I LTR MaLR 0 409 87 1563 172 7 23 chr13 77733857 77734159 -24139010 - MLT1B LTR MaLR 0 390 94 339 25 0 0 chr13 77734180 77734220 -24138949 + (TATG)n Simple_repeat Simple_repeat 2 41 0 826 122 0 0 chr13 77734220 77734335 -24138834 - FLAM_C SINE Alu -18 115 1 300 135 211 154 chr13 77734335 77734439 -24138730 - MLT1B LTR MaLR -280 110 1 383 275 22 0 chr13 77734760 77734851 -24138318 + MER5A DNA MER1_type 20 112 -77 191 381 0 24 chr13 77734907 77734991 -24138178 + L2 LINE L2 2295 2376 -938 320 252 50 120 chr13 77734994 77735236 -24137933 - L2 LINE L2 0 3313 3089 208 341 110 0 chr13 77735847 77735938 -24137231 + L2 LINE L2 3140 3240 -32 222 268 189 74 chr13 77736165 77736355 -24136814 - L2 LINE L2 -558 2756 2545 288 207 0 0 chr13 77737031 77737089 -24136080 + FLAM_A SINE Alu 76 133 0 243 103 0 0 chr13 77738839 77738878 -24134291 + (GA)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr13 77739210 77739235 -24133934 + AT_rich Low_complexity Low_complexity 1 25 0 2419 120 11 16 chr13 77739352 77739728 -24133441 + THE1C LTR MaLR 2 375 0 21 0 0 0 chr13 77739933 77739954 -24133215 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr13 77740027 77740051 -24133118 + AT_rich Low_complexity Low_complexity 1 24 0 243 155 17 52 chr13 77740325 77740383 -24132786 + (TTATA)n Simple_repeat Simple_repeat 2 57 0 23 33 0 0 chr13 77741124 77741154 -24132015 + AT_rich Low_complexity Low_complexity 1 30 0 3095 107 27 0 chr13 77741187 77741666 -24131503 - L1MA3 LINE L1 0 6305 5814 281 342 65 22 chr13 77743016 77743200 -24129969 - L3 LINE CR1 -1266 311 120 3180 171 96 14 chr13 77743240 77743993 -24129176 - MER21B LTR ERV1 -10 853 1 1301 180 87 57 chr13 77745752 77746085 -24127084 + MER2 DNA MER2_type 2 344 0 300 263 46 40 chr13 77747761 77747936 -24125233 + L1MC5 LINE L1 7736 7911 -50 379 284 9 17 chr13 77747988 77748104 -24125065 - L2 LINE L2 -30 3283 3169 507 259 77 70 chr13 77748385 77748531 -24124638 + MIR SINE MIR 2 152 -110 2187 113 3 0 chr13 77748531 77748823 -24124346 + AluSg SINE Alu 1 293 -17 507 259 77 70 chr13 77748823 77748935 -24124234 + MIR SINE MIR 152 262 0 183 80 0 0 chr13 77750960 77750985 -24122184 + (TC)n Simple_repeat Simple_repeat 2 26 0 1885 204 11 19 chr13 77750985 77751353 -24121816 - MLT2D LTR ERVL -49 365 1 237 331 242 22 chr13 77751431 77751703 -24121466 - L2 LINE L2 -243 3070 2738 2825 235 54 34 chr13 77751747 77752509 -24120660 - MER21B LTR ERV1 -44 819 43 451 197 0 0 chr13 77752516 77752587 -24120582 - MER21B LTR ERV1 -774 89 19 360 43 0 0 chr13 77752647 77752693 -24120476 + (TG)n Simple_repeat Simple_repeat 1 46 0 560 291 81 31 chr13 77753074 77753397 -24119772 + L1MC/D LINE L1 5293 5631 -2177 221 324 7 65 chr13 77754717 77754856 -24118313 - MER5A DNA MER1_type -56 133 3 27 0 0 0 chr13 77755857 77755884 -24117285 + AT_rich Low_complexity Low_complexity 1 27 0 281 241 25 38 chr13 77756314 77756393 -24116776 - L2 LINE L2 -1 3312 3235 697 245 128 19 chr13 77756644 77756909 -24116260 + LTR16A1 LTR ERVL 160 453 -4 195 272 144 40 chr13 77756923 77757096 -24116073 - L2 LINE L2 -256 3016 2826 184 271 146 10 chr13 77757660 77757756 -24115413 + L2 LINE L2 3103 3211 -102 317 307 135 42 chr13 77758427 77758619 -24114550 - MIR SINE MIR -48 214 5 22 35 0 0 chr13 77759578 77759607 -24113562 + AT_rich Low_complexity Low_complexity 1 29 0 180 376 36 51 chr13 77760397 77760702 -24112467 + L2 LINE L2 2593 2892 -422 5975 148 80 19 chr13 77760702 77761297 -24111872 - Tigger3b DNA MER2_type -1797 1231 674 1866 175 0 6 chr13 77761297 77761611 -24111558 - AluJb SINE Alu 0 312 1 5975 148 80 19 chr13 77761611 77762174 -24110995 - Tigger3b DNA MER2_type -2354 674 2 180 376 36 51 chr13 77762174 77762259 -24110910 + L2 LINE L2 2892 2977 -337 23 0 0 0 chr13 77762381 77762404 -24110765 + AT_rich Low_complexity Low_complexity 1 23 0 225 184 0 41 chr13 77762404 77762453 -24110716 + CT-rich Low_complexity Low_complexity 2 48 0 350 327 44 31 chr13 77763508 77763667 -24109502 - MIR SINE MIR 0 262 102 2131 112 46 22 chr13 77764236 77764602 -24108567 - THE1C LTR MaLR 0 375 1 357 357 25 25 chr13 77764674 77764831 -24108338 - MIR SINE MIR -88 174 18 1656 114 0 4 chr13 77764977 77765233 -24107936 + AluSq SINE Alu 57 311 0 2018 133 0 26 chr13 77765666 77765968 -24107201 - AluSx SINE Alu -18 294 1 2226 105 3 0 chr13 77766669 77766965 -24106204 + AluSp SINE Alu 1 297 -16 2091 276 69 61 chr13 77767112 77767437 -24105732 + L2 LINE L2 1852 2173 -1141 1146 167 9 48 chr13 77767437 77767664 -24105505 - MER20 DNA MER1_type -1 218 1 2091 276 69 61 chr13 77767664 77768223 -24104946 + L2 LINE L2 2173 2748 -566 2266 107 0 0 chr13 77768223 77768521 -24104648 - AluSg SINE Alu -12 298 1 2091 276 69 61 chr13 77768521 77768650 -24104519 + L2 LINE L2 2748 2874 -440 353 301 10 21 chr13 77768819 77769012 -24104157 - L1M4 LINE L1 -1033 5113 4923 2170 241 70 14 chr13 77769013 77769755 -24103414 - L1M4 LINE L1 -1577 4569 3786 313 320 48 24 chr13 77769763 77769969 -24103200 + L1ME LINE L1 5481 5691 -430 1744 185 33 39 chr13 77770305 77770668 -24102501 - MLT1A2 LTR MaLR -13 361 1 2214 109 3 0 chr13 77771159 77771461 -24101708 + AluSx SINE Alu 1 303 -9 1070 202 123 104 chr13 77771920 77772351 -24100818 - MSTB2 LTR MaLR 0 457 19 858 159 12 0 chr13 77772377 77772540 -24100629 - L1M2 LINE L1 -804 5487 5323 366 291 51 0 chr13 77772658 77772775 -24100394 - L2 LINE L2 0 3313 3191 516 272 56 97 chr13 77773408 77773750 -24099419 - LTR33A LTR ERVL -172 351 24 1843 331 47 11 chr13 77774158 77775045 -24098124 - ERVL LTR ERVL -395 5369 4451 2432 117 24 8 chr13 77775242 77775611 -24097558 - THE1C LTR MaLR 0 375 1 1844 138 46 30 chr13 77775795 77776164 -24097005 - THE1C LTR MaLR 0 375 1 221 116 0 23 chr13 77777154 77777197 -24095972 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 24 32 0 0 chr13 77777278 77777309 -24095860 + AT_rich Low_complexity Low_complexity 1 31 0 295 276 79 53 chr13 77777473 77777701 -24095468 - HAL1 LINE L1 0 2507 2274 4882 106 41 11 chr13 77778174 77778931 -24094238 - LTR17 LTR ERV1 0 780 1 24 0 0 0 chr13 77779574 77779598 -24093571 + AT_rich Low_complexity Low_complexity 1 24 0 2191 142 11 11 chr13 77780369 77780735 -24092434 - L1PA11 LINE L1 -1 6173 5808 2477 96 30 72 chr13 77780851 77781279 -24091890 - L1PA11 LINE L1 -423 5751 5342 3128 131 4 0 chr13 77781279 77781750 -24091419 + L1PA16 LINE L1 5682 6155 -11 25 75 0 0 chr13 77783198 77783251 -24089918 + AT_rich Low_complexity Low_complexity 1 53 0 315 0 0 0 chr13 77783508 77783543 -24089626 + (TG)n Simple_repeat Simple_repeat 2 36 0 262 232 18 0 chr13 77783915 77783971 -24089198 - MIR SINE MIR -2 260 204 207 330 34 45 chr13 77784008 77784096 -24089073 - MIR SINE MIR -154 108 22 4721 75 82 0 chr13 77784342 77784978 -24088191 - LTR12 LTR ERV1 0 688 1 348 303 29 91 chr13 77784994 77785202 -24087967 + MIR SINE MIR 3 197 -65 27 0 0 0 chr13 77785919 77785946 -24087223 + AT_rich Low_complexity Low_complexity 1 27 0 237 98 0 0 chr13 77786014 77786055 -24087114 + (CA)n Simple_repeat Simple_repeat 2 42 0 252 268 24 43 chr13 77786173 77786337 -24086832 + (CAGAGA)n Simple_repeat Simple_repeat 2 162 0 1852 157 6 3 chr13 77788270 77788582 -24084587 - AluSq SINE Alu 0 313 1 188 143 24 0 chr13 77788642 77788684 -24084485 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 210 291 109 9 chr13 77788804 77788914 -24084255 - MIR SINE MIR -56 206 86 241 341 85 28 chr13 77789280 77789456 -24083713 + MER5A DNA MER1_type 1 186 -3 189 351 152 13 chr13 77792551 77792702 -24080467 - MIR SINE MIR -71 191 20 220 285 49 56 chr13 77794669 77794813 -24078356 - MIR SINE MIR -50 212 70 21 0 0 0 chr13 77795462 77795483 -24077686 + AT_rich Low_complexity Low_complexity 1 21 0 2429 90 0 0 chr13 77796170 77796481 -24076688 - AluY SINE Alu 0 311 1 2167 116 0 0 chr13 77796775 77797090 -24076079 - AluSq SINE Alu 0 315 1 1288 170 63 74 chr13 77797333 77797604 -24075565 + AluJb SINE Alu 1 268 -44 22 0 0 0 chr13 77798282 77798304 -24074865 + AT_rich Low_complexity Low_complexity 1 22 0 241 276 110 31 chr13 77798436 77798563 -24074606 + L2 LINE L2 3133 3269 -3 220 301 55 0 chr13 77799079 77799152 -24074017 + MIR SINE MIR 49 125 -137 182 319 43 0 chr13 77800304 77800351 -24072818 + L3b LINE CR1 1404 1452 -131 215 309 73 37 chr13 77800877 77801013 -24072156 - L2 LINE L2 -3 3269 3129 21 36 0 0 chr13 77801370 77801398 -24071771 + AT_rich Low_complexity Low_complexity 1 28 0 2278 101 0 3 chr13 77801402 77801708 -24071461 - AluSg SINE Alu -5 305 1 1322 278 95 7 chr13 77801729 77802327 -24070842 - L1ME3A LINE L1 -221 5949 5289 349 359 70 52 chr13 77802407 77802892 -24070277 - L1ME3A LINE L1 -917 5229 4736 2577 51 0 0 chr13 77802934 77803245 -24069924 + AluY SINE Alu 1 311 0 673 302 131 20 chr13 77803254 77803993 -24069176 - L1ME3A LINE L1 -1483 4663 3843 284 262 12 0 chr13 77804015 77804099 -24069070 - L1ME3A LINE L1 -2339 3807 3723 1072 176 20 20 chr13 77804791 77804995 -24068174 - THE1B LTR MaLR -160 204 1 378 325 73 24 chr13 77806736 77806942 -24066227 + MIR SINE MIR 37 252 -10 203 333 257 14 chr13 77807090 77807300 -24065869 - MIR SINE MIR -1 261 1 302 175 12 0 chr13 77807358 77807438 -24065731 + GA-rich Low_complexity Low_complexity 2 82 0 202 325 68 0 chr13 77807493 77807610 -24065559 + MIR SINE MIR 77 201 -61 1175 280 68 70 chr13 77807799 77808560 -24064609 + L1ME2 LINE L1 64 823 -5247 399 230 92 0 chr13 77808617 77808704 -24064465 - Tigger5 DNA MER2_type -2225 98 4 1944 239 119 60 chr13 77808705 77809153 -24064016 + L1ME2 LINE L1 4481 4901 -1197 1406 180 40 6 chr13 77809153 77809476 -24063693 + L1MA4 LINE L1 5961 6294 -6 1944 239 119 60 chr13 77809476 77810528 -24062641 + L1ME2 LINE L1 4901 6074 -24 453 90 0 0 chr13 77810588 77810655 -24062514 + (TAGG)n Simple_repeat Simple_repeat 1 67 0 3158 265 51 25 chr13 77810666 77811804 -24061365 + L1MC4 LINE L1 6687 7854 -188 347 48 0 129 chr13 77811852 77811878 -24061291 - MLT2A1 LTR ERVL 0 453 438 8214 65 6 4 chr13 77811878 77812947 -24060222 - MER11C LTR ERVK 0 1071 1 347 48 0 129 chr13 77812947 77812982 -24060187 - MLT2A1 LTR ERVL -15 438 400 453 57 72 42 chr13 77812983 77813320 -24059849 + (TA)n Simple_repeat Simple_repeat 1 347 0 26 50 0 0 chr13 77813322 77813362 -24059807 + AT_rich Low_complexity Low_complexity 1 40 0 2611 95 51 15 chr13 77813362 77813752 -24059417 - MLT2A1 LTR ERVL -40 404 1 5753 100 9 31 chr13 77813986 77814885 -24058284 - L1P LINE L1 -3270 2876 1998 * 11057 79 7 7 chr13 77814881 77816431 -24056738 + L1P LINE L1 2875 4423 -1723 321 343 17 59 chr13 77816591 77816827 -24056342 - MIR SINE MIR 0 262 37 2417 114 17 14 chr13 77818278 77818637 -24054532 + THE1B LTR MaLR 1 360 -4 5820 44 0 3 chr13 77819858 77820605 -24052564 + L1P LINE L1 2718 3462 -2684 30 69 0 0 chr13 77871146 77871204 -24001965 + AT_rich Low_complexity Low_complexity 1 58 0 180 77 0 0 chr13 77871204 77871230 -24001939 + (GA)n Simple_repeat Simple_repeat 2 27 0 783 315 96 19 chr13 77871441 77871870 -24001299 + LTR16B LTR ERVL 3 464 0 306 254 0 0 chr13 77871883 77871946 -24001223 - MIR SINE MIR -104 158 96 648 193 15 104 chr13 77872172 77872374 -24000795 + FAM SINE Alu 1 48 -1 22 56 0 0 chr13 77872724 77872760 -24000409 + AT_rich Low_complexity Low_complexity 1 36 0 651 255 175 15 chr13 77872930 77873193 -23999976 + L1ME3A LINE L1 5430 5734 -428 685 294 141 21 chr13 77873200 77873526 -23999643 + L1ME3A LINE L1 5782 6146 -24 883 235 140 15 chr13 77876548 77876820 -23996349 - MLT1C LTR MaLR 0 467 162 271 163 0 0 chr13 77877771 77877814 -23995355 - L3 LINE CR1 -9 1568 1526 * 298 104 42 0 chr13 77877772 77877820 -23995349 - MIR3 SINE MIR -12 196 147 330 115 0 0 chr13 77879045 77879097 -23994072 + (CA)n Simple_repeat Simple_repeat 1 52 0 27 0 0 0 chr13 77879330 77879357 -23993812 + AT_rich Low_complexity Low_complexity 1 27 0 357 125 0 0 chr13 77879371 77879427 -23993742 + (GGA)n Simple_repeat Simple_repeat 3 58 0 245 188 0 0 chr13 77879969 77880017 -23993152 + MLT1D LTR MaLR 82 129 -376 1896 132 4 0 chr13 77880020 77880293 -23992876 + AluY SINE Alu 7 280 -31 828 204 6 22 chr13 77880393 77880574 -23992595 + AluSg/x SINE Alu 121 298 -11 1040 256 116 41 chr13 77880583 77880946 -23992223 + MLT1D LTR MaLR 115 504 -1 189 171 0 0 chr13 77881036 77881071 -23992098 + A-rich Low_complexity Low_complexity 1 35 0 1722 191 69 6 chr13 77881074 77881435 -23991734 + MER65A LTR ERV1 42 425 -20 5566 210 69 45 chr13 77881590 77882419 -23990750 + MER65A-int LTR ERV1 124 931 -3940 243 0 0 0 chr13 77882419 77882446 -23990723 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5566 210 69 45 chr13 77882446 77883487 -23989682 + MER65A-int LTR ERV1 931 2089 -2782 264 345 55 9 chr13 77884148 77884258 -23988911 + L2 LINE L2 3158 3272 0 36 0 0 0 chr13 77884513 77884549 -23988620 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr13 77884629 77884676 -23988493 + AT_rich Low_complexity Low_complexity 1 47 0 22 70 0 0 chr13 77884808 77884851 -23988318 + AT_rich Low_complexity Low_complexity 1 43 0 252 81 61 50 chr13 77884919 77885018 -23988151 + (TA)n Simple_repeat Simple_repeat 2 101 0 180 0 0 0 chr13 77885025 77885045 -23988124 + (TC)n Simple_repeat Simple_repeat 2 21 0 227 30 0 30 chr13 77885046 77885079 -23988090 + (TA)n Simple_repeat Simple_repeat 1 32 0 296 175 39 39 chr13 77887042 77887145 -23986024 + Charlie7 DNA MER1_type 2444 2546 -66 23 68 0 0 chr13 77887992 77888036 -23985133 + AT_rich Low_complexity Low_complexity 1 44 0 900 302 162 66 chr13 77888279 77888801 -23984368 - L2 LINE L2 -4 3309 2838 2059 125 7 0 chr13 77888801 77889097 -23984072 + AluSx SINE Alu 1 298 -14 900 302 162 66 chr13 77889097 77889601 -23983568 - L2 LINE L2 -475 2838 2180 465 175 0 12 chr13 77889809 77889889 -23983280 + AluSg/x SINE Alu 204 282 -30 437 303 68 39 chr13 77890027 77890436 -23982733 - L1ME4a LINE L1 -143 5978 5558 2242 115 7 0 chr13 77890657 77890961 -23982208 + AluSg SINE Alu 1 306 -4 219 370 16 24 chr13 77893531 77893658 -23979511 + MIR SINE MIR 1 126 -136 1966 214 39 0 chr13 77893668 77894107 -23979062 + L1MB8 LINE L1 5469 5924 -254 1785 137 64 25 chr13 77894135 77894494 -23978675 - THE1C LTR MaLR 0 375 3 4091 137 18 15 chr13 77894496 77895520 -23977649 - THE1C-int LTR MaLR 0 1580 3 1937 146 52 17 chr13 77895523 77895885 -23977284 - THE1C LTR MaLR 0 375 1 263 337 180 33 chr13 77896087 77896819 -23976350 + L2 LINE L2 1799 2638 -676 184 264 19 0 chr13 77896833 77896886 -23976283 + L2 LINE L2 1768 1821 -1493 467 324 100 23 chr13 77897395 77897966 -23975203 + HAL1 LINE L1 607 1221 -1286 316 255 100 126 chr13 77898070 77898331 -23974838 + HAL1 LINE L1 1431 1697 -810 189 0 0 0 chr13 77898331 77898352 -23974817 + (TC)n Simple_repeat Simple_repeat 2 22 0 1980 150 3 0 chr13 77898352 77898659 -23974510 - AluSx SINE Alu -2 310 3 316 255 100 126 chr13 77898659 77899091 -23974078 + HAL1 LINE L1 1696 2174 -333 1329 188 7 91 chr13 77899091 77899400 -23973769 + AluJo SINE Alu 4 286 -16 316 255 100 126 chr13 77899400 77899725 -23973444 + HAL1 LINE L1 2174 2506 -1 199 324 183 14 chr13 77899738 77899880 -23973289 + L2 LINE L2 2766 2931 -383 189 0 0 0 chr13 77900538 77900559 -23972610 + (CAAT)n Simple_repeat Simple_repeat 1 21 0 1744 143 0 68 chr13 77901861 77902169 -23971000 + AluJb SINE Alu 1 287 -25 21 57 0 0 chr13 77902169 77902204 -23970965 + AT_rich Low_complexity Low_complexity 1 35 0 2130 78 46 0 chr13 77902259 77902542 -23970627 - AluY SINE Alu -15 296 1 25 31 0 0 chr13 77902653 77902685 -23970484 + AT_rich Low_complexity Low_complexity 1 32 0 246 333 0 0 chr13 77902863 77902935 -23970234 - L2 LINE L2 0 3272 3201 271 274 24 12 chr13 77903051 77903135 -23970034 - L2 LINE L2 -1 3312 3228 2637 45 0 10 chr13 77903504 77903817 -23969352 + AluY SINE Alu 1 310 -1 483 269 156 46 chr13 77905396 77905723 -23967446 - LTR16A1 LTR ERVL -2 455 93 1164 118 0 49 chr13 77905793 77905996 -23967173 - AluSg/x SINE Alu 0 312 120 1223 136 35 26 chr13 77906407 77906635 -23966534 - L1MA9 LINE L1 0 6312 6083 428 314 25 0 chr13 77906898 77907019 -23966150 + MIR SINE MIR 48 171 -91 2502 59 0 3 chr13 77908021 77908326 -23964843 + AluY SINE Alu 1 304 -7 186 43 0 0 chr13 77908439 77908462 -23964707 + (TG)n Simple_repeat Simple_repeat 2 24 0 339 289 70 61 chr13 77909694 77909909 -23963260 + MIR SINE MIR 21 233 -29 195 100 0 0 chr13 77909909 77909939 -23963230 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 204 40 0 0 chr13 77909938 77909963 -23963206 + (GA)n Simple_repeat Simple_repeat 2 26 0 339 289 70 61 chr13 77909939 77909975 -23963194 + MIR SINE MIR 233 250 -12 197 196 20 0 chr13 77910755 77910806 -23962363 + (CATA)n Simple_repeat Simple_repeat 3 54 0 22 0 0 0 chr13 77910915 77910937 -23962232 + AT_rich Low_complexity Low_complexity 1 22 0 236 217 261 33 chr13 77910962 77911054 -23962115 - L2 LINE L2 0 3313 3201 705 247 115 10 chr13 77911191 77911400 -23961769 + MIR SINE MIR 16 244 -18 440 318 40 10 chr13 77911457 77911649 -23961520 - MIR SINE MIR -39 223 25 28 29 0 0 chr13 77911993 77912028 -23961141 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 77912516 77912538 -23960631 + AT_rich Low_complexity Low_complexity 1 22 0 337 265 176 0 chr13 77913788 77913890 -23959279 + L2 LINE L2 3178 3297 -16 225 0 0 0 chr13 77913893 77913918 -23959251 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 29 28 0 0 chr13 77914012 77914048 -23959121 + AT_rich Low_complexity Low_complexity 1 36 0 1813 71 0 0 chr13 77914048 77914272 -23958897 - AluY SINE Alu -10 301 78 461 67 0 0 chr13 77914334 77914394 -23958775 - AluY SINE Alu -219 92 33 209 267 53 40 chr13 77914411 77914486 -23958683 - L2 LINE L2 -1 3271 3196 1098 239 40 10 chr13 77914707 77915008 -23958161 + MER65A-int LTR ERV1 3027 3336 -1535 338 213 12 50 chr13 77915021 77915101 -23958068 + MER65A-int LTR ERV1 3885 3961 -975 250 135 154 0 chr13 77915115 77915167 -23958002 + MER65A-int LTR ERV1 5337 5396 -935 1722 254 68 2 chr13 77915176 77915602 -23957567 + MER65A-int LTR ERV1 3605 4058 -813 1841 234 53 5 chr13 77915605 77916054 -23957115 + MER65A-int LTR ERV1 4401 4871 0 2269 164 53 28 chr13 77916054 77916488 -23956681 + MER65A LTR ERV1 1 445 0 264 340 25 20 chr13 77916510 77916713 -23956456 + L2 LINE L2 3110 3313 0 2325 141 14 6 chr13 77918026 77918387 -23954782 + THE1B LTR MaLR 1 364 0 9079 125 40 57 chr13 77918389 77919994 -23953175 + THE1B-int LTR MaLR 4 1580 0 2511 113 3 19 chr13 77919994 77920364 -23952805 + THE1B LTR MaLR 1 364 0 27 62 0 0 chr13 77921399 77921447 -23951722 + AT_rich Low_complexity Low_complexity 1 48 0 735 266 37 33 chr13 77921588 77921832 -23951337 + L2 LINE L2 2502 2746 -568 4279 99 14 5 chr13 77921833 77922456 -23950713 - L1PA13 LINE L1 -194 5974 5346 1061 132 0 6 chr13 77922456 77922629 -23950540 + L1PA13 LINE L1 5991 6163 0 855 268 21 43 chr13 77922635 77922937 -23950232 + L2 LINE L2 2736 3036 -277 1626 266 85 11 chr13 77922958 77923477 -23949692 + MLT1H1 LTR MaLR 1 555 0 228 143 0 0 chr13 77923562 77923597 -23949572 - MADE1 DNA Mariner -45 35 1 191 70 0 70 chr13 77923719 77923762 -23949407 + (A)n Simple_repeat Simple_repeat 1 40 0 24 0 0 0 chr13 77924166 77924190 -23948979 + AT_rich Low_complexity Low_complexity 1 24 0 631 229 119 48 chr13 77924392 77924602 -23948567 - MLT1E2 LTR MaLR -340 286 62 187 354 0 0 chr13 77924710 77924758 -23948411 - L2 LINE L2 -58 3214 3167 968 277 79 21 chr13 77925148 77925917 -23947252 + L1ME2 LINE L1 2122 2893 -3322 306 233 144 27 chr13 77925978 77926124 -23947045 + L1ME2 LINE L1 5386 5548 -683 2449 45 0 3 chr13 77927363 77927654 -23945515 - AluY SINE Alu -20 291 2 346 324 49 45 chr13 77927928 77928172 -23944997 + L2 LINE L2 1885 2129 -1185 282 266 201 25 chr13 77928303 77928502 -23944667 - L1ME LINE L1 -323 5798 5565 211 320 39 13 chr13 77928840 77928918 -23944251 + L2 LINE L2 3231 3310 -3 2230 97 0 7 chr13 77929130 77929429 -23943740 + AluSx SINE Alu 1 297 -15 1233 253 92 13 chr13 77929493 77930084 -23943085 + L1ME2 LINE L1 5564 6232 -1 651 223 103 15 chr13 77930115 77930376 -23942793 + L1ME3 LINE L1 5887 6165 -1 199 329 66 0 chr13 77930812 77930888 -23942281 + MIR SINE MIR 54 134 -128 908 340 76 19 chr13 77931708 77932234 -23940935 + L2 LINE L2 2243 2798 -516 186 256 85 24 chr13 77932322 77932404 -23940765 + L2 LINE L2 3021 3107 -206 342 156 47 16 chr13 77932672 77932736 -23940433 - MER34 LTR ERV1 0 542 477 657 150 0 71 chr13 77932777 77932904 -23940265 - AluJb SINE Alu -64 248 131 813 175 0 7 chr13 77932931 77933074 -23940095 - FLAM_C SINE Alu 0 143 2 454 229 18 84 chr13 77933221 77933387 -23939782 - MER34 LTR ERV1 -377 165 11 2928 135 18 34 chr13 77933743 77933820 -23939349 + LOR1a LTR ERV1 1 78 -419 1991 132 4 0 chr13 77933820 77934147 -23939022 - AluSx SINE Alu 0 328 1 2928 135 18 34 chr13 77934147 77934573 -23938596 + LOR1a LTR ERV1 78 497 0 11668 27 0 0 chr13 77934620 77936776 -23936393 - L1PA4 LINE L1 0 6155 4000 23343 44 1 6 chr13 77936776 77939728 -23933441 + L1P LINE L1 505 3442 -2704 356 23 0 0 chr13 77939872 77939915 -23933254 + L1P LINE L1 3937 3979 -2167 3151 194 117 46 chr13 77939969 77941184 -23931985 - L1MA7 LINE L1 -10 6281 4980 293 295 9 9 chr13 77941270 77941286 -23931883 + GA-rich Low_complexity Low_complexity 2 17 -89 2008 139 0 19 chr13 77941286 77941602 -23931567 + AluSg SINE Alu 1 310 0 293 295 9 9 chr13 77941602 77941690 -23931479 + GA-rich Low_complexity Low_complexity 16 106 0 2341 98 0 0 chr13 77941793 77942098 -23931071 + AluSx SINE Alu 3 307 -5 340 301 96 62 chr13 77942126 77942418 -23930751 + L1M4 LINE L1 4838 5139 -1007 22 0 0 0 chr13 77942662 77942684 -23930485 + AT_rich Low_complexity Low_complexity 1 22 0 206 260 60 0 chr13 77944686 77944736 -23928433 - MIR SINE MIR -3 259 207 4877 65 1 15 chr13 77944736 77945273 -23927896 - L1PA5 LINE L1 -2 6152 5624 3438 126 206 50 chr13 77945273 77945988 -23927181 + LTR12 LTR ERV1 1 826 0 4877 65 1 15 chr13 77945988 77946107 -23927062 - L1PA5 LINE L1 -530 5624 5505 558 237 45 26 chr13 77946826 77946982 -23926187 - MIR SINE MIR -101 161 3 345 382 0 0 chr13 77947768 77947912 -23925257 + L2 LINE L2 1830 1973 -1341 418 254 196 50 chr13 77948163 77948560 -23924609 - L1ME3 LINE L1 -227 5935 5481 254 235 92 0 chr13 77948559 77948657 -23924512 - L1ME3 LINE L1 -1276 4870 4764 * 702 121 0 32 chr13 77948657 77948781 -23924388 - L1MA4A LINE L1 -6 6297 6178 581 228 5 36 chr13 77948782 77948975 -23924194 - L1 LINE L1 -852 5294 5108 6912 84 15 0 chr13 77949118 77950834 -23922335 + L1PA7 LINE L1 4424 6152 -2 39 50 0 0 chr13 77951720 77951780 -23921389 + AT_rich Low_complexity Low_complexity 1 60 0 211 224 15 0 chr13 77951986 77952053 -23921116 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 32 0 0 chr13 77952151 77952182 -23920987 + AT_rich Low_complexity Low_complexity 1 31 0 321 345 98 21 chr13 77953956 77954191 -23918978 - L1MC4a LINE L1 -1896 5912 5660 239 219 14 55 chr13 77954261 77954334 -23918835 - L1MC4a LINE L1 -594 5576 5507 37 39 0 0 chr13 77954456 77954507 -23918662 + AT_rich Low_complexity Low_complexity 1 51 0 338 277 34 95 chr13 77955154 77955302 -23917867 + L2 LINE L2 3133 3271 -1 27 0 0 0 chr13 77955677 77955704 -23917465 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr13 77955970 77955998 -23917171 + AT_rich Low_complexity Low_complexity 1 28 0 203 215 15 0 chr13 77956638 77956703 -23916466 + GA-rich Low_complexity Low_complexity 3 68 0 1040 281 60 52 chr13 77957287 77958292 -23914877 + L1M4 LINE L1 3739 4751 -1395 13942 186 58 26 chr13 77958314 77962012 -23911157 + L1M2 LINE L1 13 3911 -2937 405 0 0 0 chr13 77962012 77962057 -23911112 + (CA)n Simple_repeat Simple_repeat 2 46 0 13942 186 58 26 chr13 77962057 77963321 -23909848 + L1M2 LINE L1 3911 5133 -1715 291 113 0 0 chr13 77963504 77963557 -23909612 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 1186 274 99 31 chr13 77963557 77964072 -23909097 + L2 LINE L2 2251 2800 -514 1193 332 44 60 chr13 77964225 77965252 -23907917 - L2 LINE L2 -2 3311 2306 1294 45 0 0 chr13 77966673 77966830 -23906339 - AluY SINE Alu -12 299 143 2216 107 0 16 chr13 77967383 77967692 -23905477 - AluSq SINE Alu -9 304 1 340 269 38 14 chr13 77967754 77967962 -23905207 - L1ME3 LINE L1 -239 5931 5713 191 250 0 0 chr13 77967963 77967999 -23905170 - MIR SINE MIR -56 152 117 196 350 17 0 chr13 77968563 77968623 -23904546 + L3b LINE CR1 1511 1571 -12 256 314 83 81 chr13 77968623 77968830 -23904339 - L2 LINE L2 0 3272 3067 351 0 0 0 chr13 77968830 77968869 -23904300 + (CA)n Simple_repeat Simple_repeat 1 39 0 256 314 83 81 chr13 77968869 77969082 -23904087 - L2 LINE L2 -205 3067 2851 181 336 8 34 chr13 77969312 77969431 -23903738 - L2 LINE L2 -850 2464 2349 180 77 0 0 chr13 77969432 77969458 -23903711 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 2515 83 5 24 chr13 77969462 77969837 -23903332 - L1PB1 LINE L1 -2 6149 5782 40 0 0 0 chr13 77969840 77969880 -23903289 + AT_rich Low_complexity Low_complexity 1 40 0 282 95 89 30 chr13 77969880 77970049 -23903120 + (TA)n Simple_repeat Simple_repeat 2 180 0 496 38 119 6 chr13 77970070 77970229 -23902940 + (TA)n Simple_repeat Simple_repeat 1 177 0 606 74 0 0 chr13 77970229 77970310 -23902859 - L1PB1 LINE L1 -362 5789 5709 1692 80 0 17 chr13 77970311 77970548 -23902621 + L1PB1 LINE L1 5448 5680 -471 593 306 80 43 chr13 77970576 77970905 -23902264 - L2 LINE L2 -1035 2279 1923 1391 197 81 16 chr13 77970905 77971225 -23901944 - MER61A LTR ERV1 -2 341 1 593 306 80 43 chr13 77971225 77971408 -23901761 - L2 LINE L2 -1391 1923 1748 756 288 122 18 chr13 77972115 77972452 -23900717 - LTR33A LTR ERVL -3 520 149 23 0 0 0 chr13 77973605 77973628 -23899541 + AT_rich Low_complexity Low_complexity 1 23 0 244 318 31 62 chr13 77974270 77974399 -23898770 + MIR SINE MIR 120 244 -18 1126 171 14 14 chr13 77974399 77974609 -23898560 + MER6B DNA MER2_type 1 210 0 201 74 0 0 chr13 77975440 77975467 -23897702 + (A)n Simple_repeat Simple_repeat 1 27 0 415 338 73 18 chr13 77977807 77978026 -23895143 + MIR SINE MIR 26 256 -6 270 0 0 0 chr13 77978210 77978240 -23894929 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 82 0 0 chr13 77979005 77979054 -23894115 + AT_rich Low_complexity Low_complexity 1 49 0 40 37 0 0 chr13 77979286 77979340 -23893829 + AT_rich Low_complexity Low_complexity 1 54 0 257 339 73 9 chr13 77979343 77979452 -23893717 - L2 LINE L2 -1 3271 3156 2119 121 0 3 chr13 77979605 77979903 -23893266 + AluSx SINE Alu 1 297 -15 2585 166 51 25 chr13 77980263 77980811 -23892358 - L1MB1 LINE L1 -1 6167 5606 2257 191 43 60 chr13 77980811 77981536 -23891633 + L1MB1 LINE L1 4880 5607 -596 1800 251 24 34 chr13 77981544 77982046 -23891123 + MLT1D LTR MaLR 6 502 -3 23 33 0 0 chr13 77983598 77983628 -23889541 + AT_rich Low_complexity Low_complexity 1 30 0 240 200 0 0 chr13 77983869 77983924 -23889245 + (TG)n Simple_repeat Simple_repeat 2 56 0 234 332 12 0 chr13 77983937 77984187 -23888982 + (TG)n Simple_repeat Simple_repeat 1 253 0 966 244 53 4 chr13 77984373 77984635 -23888534 + L1MDa LINE L1 91 365 -6175 1026 302 36 58 chr13 77984639 77985056 -23888113 + L1MDa LINE L1 419 826 -5714 755 144 8 0 chr13 77985058 77985190 -23887979 + AluSg/x SINE Alu 180 312 0 210 383 83 21 chr13 77985478 77985671 -23887498 + MIR SINE MIR 55 259 -3 728 244 37 28 chr13 77986627 77986844 -23886325 - MER20 DNA MER1_type 0 219 1 236 295 74 21 chr13 77987717 77987812 -23885357 - L2 LINE L2 -22 3291 3192 29 84 0 0 chr13 77988081 77988152 -23885017 + AT_rich Low_complexity Low_complexity 1 71 0 2350 168 219 81 chr13 77988214 77989111 -23884058 + LTR28 LTR ERV1 1 1020 0 21 36 0 0 chr13 77989125 77989153 -23884016 + AT_rich Low_complexity Low_complexity 1 28 0 862 226 34 0 chr13 77990989 77991166 -23882003 - MLT1B LTR MaLR 0 390 208 641 234 69 6 chr13 77991247 77991422 -23881747 - MLT1B LTR MaLR -204 186 1 613 342 24 45 chr13 77991504 77991837 -23881332 - L2 LINE L2 0 3313 2988 1398 321 86 18 chr13 77992018 77992620 -23880549 + L1MEc LINE L1 117 677 -5719 288 0 0 0 chr13 77992620 77992652 -23880517 + (CA)n Simple_repeat Simple_repeat 2 33 0 1398 321 86 18 chr13 77992652 77993211 -23879958 + L1MEc LINE L1 677 1357 -5039 848 285 47 34 chr13 77993310 77993544 -23879625 + L1MEc LINE L1 1598 1828 -4568 2659 26 0 0 chr13 77993544 77993846 -23879323 + AluY SINE Alu 1 302 -9 848 285 47 34 chr13 77993846 77994078 -23879091 + L1MEc LINE L1 1828 2070 -4326 785 278 100 11 chr13 77994119 77994588 -23878581 + L1MEc LINE L1 2156 2619 -3596 186 143 0 0 chr13 77995126 77995161 -23878008 + (TG)n Simple_repeat Simple_repeat 2 36 0 241 65 0 0 chr13 77996109 77996140 -23877029 + L1 LINE L1 4918 4948 -1198 543 266 41 121 chr13 77996141 77996554 -23876615 - L2 LINE L2 -11 3302 2923 186 298 0 0 chr13 77996557 77996604 -23876565 - L2 LINE L2 -3155 159 113 1364 84 11 5 chr13 77996768 77996958 -23876211 + MLT2A2 LTR ERVL 1 191 -262 * 1805 155 48 36 chr13 77996957 77997293 -23875876 + THE1B LTR MaLR 22 361 -3 288 0 0 0 chr13 77997415 77997447 -23875722 + (TA)n Simple_repeat Simple_repeat 1 32 0 2300 99 0 0 chr13 77997448 77997741 -23875428 - AluSc SINE Alu -16 293 1 2085 125 0 31 chr13 77998556 77998877 -23874292 - AluSx SINE Alu -1 311 1 234 191 95 0 chr13 78000047 78000110 -23873059 - L1MEc LINE L1 -5259 1137 1069 28 29 0 0 chr13 78001442 78001477 -23871692 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 78001626 78001648 -23871521 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 78002148 78002169 -23871000 + AT_rich Low_complexity Low_complexity 1 21 0 509 304 73 47 chr13 78003371 78003821 -23869348 + L1ME3A LINE L1 4478 4939 -1207 2139 122 0 3 chr13 78004298 78004602 -23868567 + AluSx SINE Alu 1 303 -9 955 306 50 66 chr13 78004696 78005584 -23867585 + L1ME3A LINE L1 5281 6153 -17 535 321 24 19 chr13 78006471 78006680 -23866489 - MIR SINE MIR -5 257 48 2467 74 0 3 chr13 78006846 78007157 -23866012 + AluY SINE Alu 1 310 -1 341 291 112 0 chr13 78007470 78007604 -23865565 + L3 LINE CR1 426 574 -1003 2065 138 0 0 chr13 78009362 78009658 -23863511 + AluSg SINE Alu 1 296 -14 924 216 30 5 chr13 78009787 78009986 -23863183 + AluJo SINE Alu 3 206 -106 210 340 0 0 chr13 78010552 78010605 -23862564 - MIR3 SINE MIR -34 174 122 27 81 0 0 chr13 78011225 78011287 -23861882 + AT_rich Low_complexity Low_complexity 1 62 0 284 324 185 12 chr13 78011371 78011544 -23861625 - MIR SINE MIR -12 250 48 203 95 32 32 chr13 78013793 78013856 -23859313 + (TA)n Simple_repeat Simple_repeat 2 64 0 349 96 57 40 chr13 78013942 78014119 -23859050 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 35 0 0 chr13 78014270 78014299 -23858870 + AT_rich Low_complexity Low_complexity 1 29 0 396 309 42 21 chr13 78018082 78018273 -23854896 + HAL1b LINE L1 293 487 -861 255 231 77 82 chr13 78018451 78018646 -23854523 + HAL1b LINE L1 695 888 -460 2315 84 0 3 chr13 78018737 78019047 -23854122 + AluY SINE Alu 1 309 -2 1009 167 12 93 chr13 78020980 78021226 -23851943 + L1MA9 LINE L1 6056 6281 -31 4917 150 101 3 chr13 78021796 78022977 -23850192 + L1PA16 LINE L1 4666 5994 -172 2451 171 14 2 chr13 78024613 78025034 -23848135 + MSTB LTR MaLR 1 426 0 565 291 108 14 chr13 78026676 78026899 -23846270 + MLT1J2 LTR MaLR 68 311 -139 368 367 71 47 chr13 78027189 78027511 -23845658 + L2 LINE L2 2127 2472 -842 1610 218 11 14 chr13 78027511 78027874 -23845295 - MLT1A1 LTR MaLR 0 365 4 368 367 71 47 chr13 78027874 78028153 -23845016 + L2 LINE L2 2472 2743 -571 183 333 0 0 chr13 78029320 78029365 -23843804 - L2 LINE L2 -88 3184 3140 183 387 160 20 chr13 78030278 78030635 -23842534 - L2 LINE L2 -583 2731 2325 316 103 52 0 chr13 78031084 78031142 -23842027 - L1MA5 LINE L1 0 6300 6240 324 265 26 175 chr13 78032330 78032508 -23840661 + L3 LINE CR1 1149 1263 -314 372 146 24 49 chr13 78032508 78032590 -23840579 - MER116 DNA Mariner 0 80 1 324 265 26 175 chr13 78032590 78032720 -23840449 + L3 LINE CR1 1263 1411 -166 488 246 70 0 chr13 78032970 78033084 -23840085 + MER45A DNA AcHobo 50 171 -7 30 45 0 0 chr13 78034082 78034126 -23839043 + AT_rich Low_complexity Low_complexity 1 44 0 1956 119 11 0 chr13 78034292 78034570 -23838599 + AluSq SINE Alu 1 281 -32 214 0 26 77 chr13 78034570 78034609 -23838560 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 24 67 0 0 chr13 78034819 78034864 -23838305 + AT_rich Low_complexity Low_complexity 1 45 0 253 289 51 32 chr13 78035358 78035514 -23837655 + L1M4 LINE L1 3605 3763 -2383 1709 222 6 6 chr13 78035639 78035991 -23837178 + MLT1A1 LTR MaLR 1 352 -13 501 71 48 0 chr13 78036156 78036240 -23836929 + L1PA7 LINE L1 6065 6152 -2 2377 107 38 14 chr13 78036518 78036884 -23836285 - THE1C LTR MaLR 0 375 1 2562 104 0 3 chr13 78037429 78037785 -23835384 - THE1A LTR MaLR 0 355 1 11196 102 10 1 chr13 78037785 78039352 -23833817 - THE1A-int LTR MaLR 0 1580 1 2387 84 43 14 chr13 78039352 78039697 -23833472 - THE1A LTR MaLR 0 355 1 576 259 25 6 chr13 78039698 78039860 -23833309 + L1MD3 LINE L1 7821 7985 -10 388 299 86 12 chr13 78040945 78041270 -23831899 + L1ME4a LINE L1 5588 5936 -185 414 217 62 31 chr13 78041317 78041446 -23831723 + MER94 DNA DNA 2 134 0 461 259 91 14 chr13 78041448 78041591 -23831578 - MIR SINE MIR -16 246 93 1426 199 13 16 chr13 78041593 78041862 -23831307 + AluJb SINE Alu 1 270 -42 2186 135 31 6 chr13 78041862 78042217 -23830952 - THE1B LTR MaLR 0 364 1 1426 199 13 16 chr13 78042217 78042254 -23830915 + AluJb SINE Alu 270 306 -6 284 224 35 17 chr13 78042270 78042328 -23830841 - MIR SINE MIR -195 67 9 1905 111 17 3 chr13 78044055 78044343 -23828826 - L1PA14 LINE L1 -2 6159 5868 1589 174 42 28 chr13 78044355 78044711 -23828458 + MER46B DNA MER2_type 1 236 0 1997 129 139 13 chr13 78045546 78045926 -23827243 + MSTA LTR MaLR 1 428 0 1813 117 0 58 chr13 78046220 78046545 -23826624 + AluSg SINE Alu 6 313 0 485 291 80 75 chr13 78046605 78046860 -23826309 + L2 LINE L2 1521 1773 -1541 1528 218 7 0 chr13 78046860 78047149 -23826020 - AluJb SINE Alu -21 291 1 485 291 80 75 chr13 78047149 78047481 -23825688 + L2 LINE L2 1773 2111 -1203 2166 106 3 0 chr13 78048344 78048636 -23824533 - AluSp SINE Alu -16 297 5 2097 187 49 2 chr13 78048844 78049251 -23823918 - MSTB LTR MaLR 0 426 1 2049 120 3 3 chr13 78049406 78049698 -23823471 + AluSp SINE Alu 1 292 -21 295 346 15 0 chr13 78049751 78049881 -23823288 + GA-rich Low_complexity Low_complexity 5 136 0 26 0 0 0 chr13 78050180 78050206 -23822963 + AT_rich Low_complexity Low_complexity 1 26 0 2198 98 3 29 chr13 78050365 78050680 -23822489 + AluSg SINE Alu 1 307 -3 274 103 0 0 chr13 78051612 78051651 -23821518 - MLT2C1 LTR ERVL -10 387 349 189 74 0 0 chr13 78051999 78052026 -23821143 + (GA)n Simple_repeat Simple_repeat 2 28 0 234 314 12 47 chr13 78052061 78052147 -23821022 - L2 LINE L2 -3 3310 3228 664 270 24 11 chr13 78052229 78052459 -23820710 + L1MC4a LINE L1 7250 7453 -355 366 225 50 6 chr13 78052464 78052624 -23820545 + GA-rich Low_complexity Low_complexity 3 169 0 630 257 92 5 chr13 78052672 78052878 -23820291 + L1MC4 LINE L1 7581 7804 -238 902 184 22 66 chr13 78053001 78053229 -23819940 - MER20 DNA MER1_type 0 219 2 2003 285 58 10 chr13 78053268 78054623 -23818546 + L1ME2 LINE L1 1601 2994 -3221 885 115 0 0 chr13 78054637 78054767 -23818402 + L1MA5A LINE L1 5658 5787 -510 1801 145 69 0 chr13 78054767 78055057 -23818112 + AluSx SINE Alu 1 310 -2 368 83 33 0 chr13 78055057 78055117 -23818052 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 2951 137 6 23 chr13 78055125 78055650 -23817519 + L1MA5A LINE L1 5782 6297 0 388 275 228 5 chr13 78055676 78056080 -23817089 + L1ME2 LINE L1 3035 3528 -2687 323 225 0 0 chr13 78056094 78056165 -23817004 - L1 LINE L1 -2743 3403 3333 6066 187 25 12 chr13 78056177 78057476 -23815693 + L1 LINE L1 2900 4214 -1932 2093 270 131 33 chr13 78057474 78059743 -23813426 + L1ME2 LINE L1 3732 6224 -9 * 22 35 0 0 chr13 78059743 78059772 -23813397 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr13 78060773 78060816 -23812353 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr13 78060843 78060879 -23812290 + AT_rich Low_complexity Low_complexity 1 36 0 2114 115 27 32 chr13 78060945 78061319 -23811850 + L1MA2 LINE L1 5933 6304 0 475 259 19 0 chr13 78062559 78062667 -23810502 + L2 LINE L2 3189 3298 -15 4226 147 141 16 chr13 78062725 78063442 -23809727 + Tigger3(Golem) DNA MER2_type 2 628 -2401 5434 16 2 0 chr13 78063442 78064069 -23809100 + L1PA2 LINE L1 5528 6155 0 4226 147 141 16 chr13 78064069 78064349 -23808820 + Tigger3(Golem) DNA MER2_type 628 2848 -181 425 185 0 7 chr13 78065156 78065274 -23807895 - MER20 DNA MER1_type -2 217 11 1250 102 0 11 chr13 78067744 78067921 -23805248 - AluY SINE Alu -9 302 128 198 372 13 0 chr13 78068077 78068155 -23805014 + L2 LINE L2 2250 2328 -986 396 0 0 0 chr13 78068296 78068340 -23804829 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 1366 306 36 35 chr13 78068345 78068982 -23804187 - L2 LINE L2 -1069 2245 1608 730 244 4 74 chr13 78068986 78069192 -23803977 + L1M4b LINE L1 -302 4294967184 -6658 1629 211 20 28 chr13 78069192 78069585 -23803584 - MLT1B LTR MaLR 0 390 1 730 244 4 74 chr13 78069585 78069608 -23803561 + L1M4b LINE L1 -112 4294967207 -6635 533 270 15 0 chr13 78069604 78069741 -23803428 + L1M4b LINE L1 409 547 -5999 * 4135 183 29 23 chr13 78069744 78070476 -23802693 + MER6 DNA MER2_type 8 747 -118 2104 121 0 3 chr13 78070476 78070774 -23802395 - AluSq SINE Alu -16 297 1 4135 183 29 23 chr13 78070774 78070894 -23802275 + MER6 DNA MER2_type 747 865 0 2152 276 41 11 chr13 78071242 78071883 -23801286 - MER76 LTR ERV -28 660 1 1626 229 39 45 chr13 78072130 78072846 -23800323 + L1M4b LINE L1 877 1594 -4948 1247 324 91 13 chr13 78072872 78073498 -23799671 - L2 LINE L2 -2062 1252 578 210 244 0 0 chr13 78075141 78075186 -23797983 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 1215 108 10 39 chr13 78075551 78075755 -23797414 + AluY SINE Alu 101 298 -13 23 33 0 0 chr13 78077044 78077074 -23796095 + AT_rich Low_complexity Low_complexity 1 30 0 1895 95 0 75 chr13 78077332 78077627 -23795542 + AluSg SINE Alu 22 294 -16 215 223 9 54 chr13 78077834 78077946 -23795223 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 246 333 0 0 chr13 78078975 78079047 -23794122 + L2 LINE L2 3242 3313 0 270 340 64 0 chr13 78080455 78080611 -23792558 - MER103 DNA DNA 0 166 1 2442 85 0 0 chr13 78080814 78081120 -23792049 - AluSc SINE Alu -1 308 3 340 164 30 0 chr13 78081121 78081188 -23791981 - MER5A DNA MER1_type -112 77 9 704 120 0 0 chr13 78081877 78081977 -23791192 - LTR12 LTR ERV1 0 714 615 312 233 11 0 chr13 78081979 78082069 -23791100 - LTR30 LTR ERV1 -79 643 553 1386 109 157 4 chr13 78082069 78082321 -23790848 - LTR12 LTR ERV1 -401 2037 57 265 231 0 0 chr13 78082321 78082373 -23790796 - LTR30 LTR ERV1 -670 52 1 23 33 0 0 chr13 78083223 78083253 -23789916 + AT_rich Low_complexity Low_complexity 1 30 0 2177 78 3 7 chr13 78083371 78083697 -23789472 + AluSq SINE Alu 1 325 0 324 0 0 0 chr13 78083772 78083808 -23789361 + (TG)n Simple_repeat Simple_repeat 2 37 0 413 317 45 50 chr13 78084022 78084243 -23788926 - MIR SINE MIR 0 262 43 1154 209 67 26 chr13 78085668 78086119 -23787050 - MLT1D LTR MaLR -7 498 1 766 256 136 57 chr13 78086605 78087112 -23786057 + MLT1H1 LTR MaLR 1 547 -8 21 0 0 0 chr13 78087795 78087816 -23785353 + AT_rich Low_complexity Low_complexity 1 21 0 665 203 23 0 chr13 78087816 78087949 -23785220 - AluJo SINE Alu -176 136 1 919 171 19 47 chr13 78087965 78088176 -23784993 - L1MC1 LINE L1 -6 6327 6123 207 69 0 0 chr13 78088179 78088208 -23784961 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1700 130 0 4 chr13 78088212 78088466 -23784703 - AluSq SINE Alu -60 253 1 341 266 126 27 chr13 78089039 78089332 -23783837 - L1ME4a LINE L1 -94 6027 5706 34 42 0 0 chr13 78089579 78089627 -23783542 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr13 78091893 78091922 -23781247 + AT_rich Low_complexity Low_complexity 1 29 0 323 227 209 9 chr13 78092469 78092579 -23780590 - L2 LINE L2 -7 3306 3175 23 0 0 0 chr13 78093233 78093256 -23779913 + AT_rich Low_complexity Low_complexity 1 23 0 521 250 33 0 chr13 78093899 78094019 -23779150 - MER5B DNA MER1_type -1 177 54 2355 73 0 3 chr13 78094098 78094401 -23778768 + AluSg SINE Alu 1 302 -8 21 82 0 0 chr13 78095409 78095458 -23777711 + AT_rich Low_complexity Low_complexity 1 49 0 244 293 50 40 chr13 78095836 78095935 -23777234 + L2 LINE L2 3169 3268 -4 416 191 56 0 chr13 78096086 78096175 -23776994 - MSTC LTR MaLR -334 94 1 200 211 0 0 chr13 78097351 78097389 -23775780 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 259 244 57 24 chr13 78097480 78097603 -23775566 + L1ME4a LINE L1 5978 6104 -17 444 272 215 36 chr13 78097906 78098431 -23774738 - L1M4 LINE L1 -1755 4391 3773 191 88 29 0 chr13 78098493 78098527 -23774642 + (TATAA)n Simple_repeat Simple_repeat 4 38 0 1309 236 56 13 chr13 78098527 78098904 -23774265 - L1M4 LINE L1 -1019 5127 4735 329 178 14 0 chr13 78098942 78099015 -23774154 - MLT1D LTR MaLR 0 505 432 396 59 0 0 chr13 78099019 78099070 -23774099 + (TG)n Simple_repeat Simple_repeat 2 52 0 249 264 38 94 chr13 78099273 78099432 -23773737 + L2 LINE L2 2174 2323 -991 1383 223 121 38 chr13 78099494 78099916 -23773253 + MLT1E2 LTR MaLR 1 457 -169 189 374 23 23 chr13 78100014 78100145 -23773024 + L2 LINE L2 2952 3082 -231 2122 104 3 3 chr13 78100578 78100865 -23772304 + AluSc SINE Alu 1 287 -22 22 0 0 0 chr13 78101327 78101349 -23771820 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr13 78101441 78101471 -23771698 + AT_rich Low_complexity Low_complexity 1 30 0 231 181 64 12 chr13 78101485 78101656 -23771513 + (TA)n Simple_repeat Simple_repeat 1 180 0 276 234 13 39 chr13 78101687 78101841 -23771328 + (TAAA)n Simple_repeat Simple_repeat 4 153 0 26 0 0 0 chr13 78101875 78101901 -23771268 + AT_rich Low_complexity Low_complexity 1 26 0 2098 116 3 0 chr13 78101901 78102186 -23770983 - AluSg SINE Alu -24 286 1 1713 179 13 3 chr13 78102192 78102493 -23770676 - AluSx SINE Alu -8 304 1 1617 107 16 12 chr13 78103394 78103638 -23769531 + THE1C LTR MaLR 4 248 -127 21 36 0 0 chr13 78105210 78105238 -23767931 + AT_rich Low_complexity Low_complexity 1 28 0 2167 38 55 41 chr13 78105701 78105992 -23767177 - AluY SINE Alu -15 296 2 4706 123 30 18 chr13 78106170 78106940 -23766229 + MER4E LTR ERV1 1 779 0 276 179 26 17 chr13 78107546 78107663 -23765506 + (TAGA)n Simple_repeat Simple_repeat 4 121 0 411 301 105 0 chr13 78108019 78108152 -23765017 + MIR SINE MIR 116 262 0 2234 104 7 7 chr13 78108663 78108972 -23764197 - AluSq SINE Alu -4 309 1 644 362 101 13 chr13 78109468 78110089 -23763080 + L2 LINE L2 1711 2386 -928 1929 144 23 0 chr13 78110725 78111024 -23762145 - AluSq SINE Alu -7 306 1 180 184 41 41 chr13 78112357 78112406 -23760763 - L2 LINE L2 -1318 1996 1948 526 42 0 28 chr13 78113133 78113205 -23759964 + L1PA5 LINE L1 6079 6148 -6 1316 70 0 0 chr13 78113272 78113443 -23759726 - L1PA10 LINE L1 -481 5687 5517 3238 94 7 2 chr13 78113443 78113901 -23759268 + L1PA10 LINE L1 5691 6150 -18 504 272 94 20 chr13 78114155 78114357 -23758812 + MIR SINE MIR 16 232 -30 1519 231 45 17 chr13 78114454 78114809 -23758360 - MLT1A1 LTR MaLR 0 365 1 3269 128 30 8 chr13 78115105 78115613 -23757556 - MER1A DNA MER1_type -10 519 1 2295 112 0 0 chr13 78116276 78116581 -23756588 - AluSx SINE Alu -7 305 1 214 342 120 38 chr13 78116886 78117044 -23756125 + L2 LINE L2 3130 3300 -13 778 119 0 30 chr13 78117559 78117693 -23755476 - FLAM_C SINE Alu -3 130 1 253 296 129 15 chr13 78117706 78117838 -23755331 + L2 LINE L2 1740 1886 -1428 847 269 38 108 chr13 78117908 78118306 -23754863 - LTR16A LTR ERVL -13 437 68 2186 98 0 0 chr13 78118775 78119071 -23754098 + AluY SINE Alu 1 296 -15 23 0 0 0 chr13 78119321 78119344 -23753825 + AT_rich Low_complexity Low_complexity 1 23 0 282 324 19 28 chr13 78119586 78119694 -23753475 - L2 LINE L2 0 3313 3207 1558 207 34 11 chr13 78119899 78120256 -23752913 + MLT1A1 LTR MaLR 1 365 0 914 219 20 52 chr13 78120518 78120769 -23752400 + MLT1A2 LTR MaLR 132 374 0 230 221 0 0 chr13 78120792 78120844 -23752325 + Alu SINE Alu 79 120 -13 223 162 0 0 chr13 78121001 78121038 -23752131 + (CATA)n Simple_repeat Simple_repeat 2 38 0 36 0 0 0 chr13 78121079 78121115 -23752054 + AT_rich Low_complexity Low_complexity 1 36 0 978 228 99 31 chr13 78122354 78122736 -23750433 - LTR37A LTR ERV1 0 426 19 197 143 0 41 chr13 78123015 78123064 -23750105 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2294 87 0 16 chr13 78123857 78124168 -23749001 + AluY SINE Alu 1 306 -5 22 0 0 0 chr13 78124961 78124983 -23748186 + AT_rich Low_complexity Low_complexity 1 22 0 1095 136 0 0 chr13 78124983 78125145 -23748024 - AluSg/x SINE Alu -25 287 126 2238 105 0 0 chr13 78125145 78125451 -23747718 - AluSg SINE Alu 0 310 5 354 258 116 43 chr13 78125510 78125687 -23747482 - MIR SINE MIR -59 203 18 270 336 8 41 chr13 78125915 78126037 -23747132 + L2 LINE L2 2256 2373 -941 648 247 53 87 chr13 78126102 78126402 -23746767 + MLT1A1 LTR MaLR 1 290 -75 2326 243 35 93 chr13 78126432 78127358 -23745811 + MLT1A1-int LTR MaLR 1 872 -499 433 248 43 75 chr13 78127461 78127622 -23745547 + MLT1A1-int LTR MaLR 937 1092 -279 2115 136 12 3 chr13 78127633 78127978 -23745191 - L1PA13 LINE L1 -7 6156 5809 559 222 31 88 chr13 78128193 78128387 -23744782 + MLT1D LTR MaLR 4 186 -440 * 594 265 40 20 chr13 78128369 78128569 -23744600 + MLT1D LTR MaLR 301 504 -1 776 245 168 46 chr13 78129343 78129717 -23743452 + MLT1E1 LTR MaLR 17 372 -252 2095 120 0 0 chr13 78129747 78130031 -23743138 + AluSg1 SINE Alu 3 286 -23 1361 180 26 22 chr13 78132517 78132784 -23740385 - AluJb SINE Alu -44 268 1 2137 269 84 31 chr13 78133295 78134068 -23739101 - L1M4 LINE L1 -5702 840 27 24 53 0 0 chr13 78135316 78135354 -23737815 + AT_rich Low_complexity Low_complexity 1 38 0 549 241 93 19 chr13 78135530 78135746 -23737423 - L1ME3 LINE L1 -198 5964 5733 259 286 12 0 chr13 78135749 78135833 -23737336 - L1ME3 LINE L1 -536 5634 5550 22 0 0 0 chr13 78136009 78136031 -23737138 + AT_rich Low_complexity Low_complexity 1 22 0 297 338 58 24 chr13 78137911 78138118 -23735051 - MIR SINE MIR -20 242 29 1761 186 0 0 chr13 78138684 78138980 -23734189 - AluJb SINE Alu -7 305 10 291 318 149 21 chr13 78140662 78140904 -23732265 - MLT1J LTR MaLR 0 511 239 184 360 87 58 chr13 78141804 78142254 -23730915 - L2 LINE L2 -1034 2280 1818 222 273 18 0 chr13 78142336 78142391 -23730778 + (TG)n Simple_repeat Simple_repeat 1 56 0 3367 256 112 28 chr13 78144741 78144848 -23728321 - L1ME2 LINE L1 -16 6148 6051 1859 146 7 0 chr13 78144848 78145129 -23728040 + AluSc SINE Alu 1 283 -26 3367 256 112 28 chr13 78145129 78145404 -23727765 - L1ME2 LINE L1 -113 6051 5801 1838 144 40 60 chr13 78145404 78145590 -23727579 + MLT1B LTR MaLR 2 190 -200 1460 206 11 0 chr13 78145590 78145903 -23727266 + AluJo SINE Alu 1 316 0 1838 144 40 60 chr13 78145903 78146112 -23727057 + MLT1B LTR MaLR 190 390 0 3367 256 112 28 chr13 78146112 78147701 -23725468 - L1ME2 LINE L1 -363 5801 3957 183 42 0 0 chr13 78147701 78147725 -23725444 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3367 256 112 28 chr13 78147725 78148024 -23725145 - L1ME2 LINE L1 -2207 3957 3685 22 0 0 0 chr13 78148465 78148487 -23724682 + AT_rich Low_complexity Low_complexity 1 22 0 2558 96 11 14 chr13 78148619 78148984 -23724185 - THE1B LTR MaLR 0 364 1 2084 50 0 73 chr13 78149012 78149313 -23723856 - AluY SINE Alu -4 307 29 1504 167 67 7 chr13 78149902 78150172 -23722997 - AluJo SINE Alu -26 286 1 243 0 0 0 chr13 78152362 78152389 -23720780 + (T)n Simple_repeat Simple_repeat 1 27 0 1098 162 5 20 chr13 78152743 78152940 -23720229 + AluSq SINE Alu 1 194 -119 225 0 0 0 chr13 78153870 78153895 -23719274 + (A)n Simple_repeat Simple_repeat 1 25 0 767 261 128 83 chr13 78154532 78155000 -23718169 + MLT1F1 LTR MaLR 71 559 -8 213 175 0 0 chr13 78155182 78155222 -23717947 + GA-rich Low_complexity Low_complexity 1 40 0 256 295 26 26 chr13 78155293 78155371 -23717798 - L2 LINE L2 -3 3269 3192 2287 110 3 0 chr13 78155534 78155875 -23717294 - AluSg SINE Alu 0 342 1 730 225 182 0 chr13 78156138 78156325 -23716844 + MER58A DNA MER1_type 4 224 0 279 157 0 0 chr13 78156440 78156491 -23716678 + (TG)n Simple_repeat Simple_repeat 1 51 0 450 154 0 0 chr13 78156887 78156965 -23716204 + (TA)n Simple_repeat Simple_repeat 2 79 0 2147 131 0 3 chr13 78158305 78158611 -23714558 + AluSc SINE Alu 1 305 -4 383 316 147 8 chr13 78159484 78159953 -23713216 + L1ME3 LINE L1 1246 1779 -4617 294 290 52 52 chr13 78160004 78160273 -23712896 + L1ME3 LINE L1 3518 3786 -2429 1834 278 59 42 chr13 78160589 78161471 -23711698 + L1ME3 LINE L1 5328 6224 -7 401 245 108 28 chr13 78161513 78161725 -23711444 + L1ME3 LINE L1 5609 5837 -325 235 271 85 17 chr13 78161741 78161859 -23711310 + L1ME3 LINE L1 5910 6035 -127 1770 208 35 62 chr13 78161951 78162431 -23710738 - MLT1C LTR MaLR 0 467 1 183 318 80 80 chr13 78162567 78162718 -23710451 - MIR3 SINE MIR -6 202 52 683 215 21 0 chr13 78167241 78167412 -23705757 - AluJb SINE Alu 0 309 136 1242 151 5 5 chr13 78167516 78167721 -23705448 + L1MC1 LINE L1 6123 6327 -6 2115 119 0 6 chr13 78167861 78168193 -23704976 + AluSc SINE Alu 1 330 0 2299 97 0 0 chr13 78169008 78169308 -23703861 + AluY SINE Alu 1 300 -11 1108 233 91 104 chr13 78171225 78171674 -23701495 - MLT1E2 LTR MaLR 0 626 186 1124 55 0 42 chr13 78171674 78171839 -23701330 + L1PA6 LINE L1 5997 6154 0 1108 233 91 104 chr13 78171839 78172015 -23701154 - MLT1E2 LTR MaLR -440 186 9 451 276 92 72 chr13 78172628 78172878 -23700291 - MIR SINE MIR -1 261 7 2832 118 9 7 chr13 78176136 78176578 -23696591 - L1PB1 LINE L1 0 6151 5709 201 167 0 0 chr13 78177759 78177795 -23695374 + (TA)n Simple_repeat Simple_repeat 1 36 0 343 233 9 43 chr13 78178376 78178492 -23694677 - L1MEd LINE L1 -5989 130 19 30 27 0 0 chr13 78179933 78179970 -23693199 + AT_rich Low_complexity Low_complexity 1 37 0 2088 120 0 0 chr13 78180586 78180869 -23692300 + AluSq SINE Alu 15 297 -16 21 0 0 0 chr13 78181942 78181963 -23691206 + AT_rich Low_complexity Low_complexity 1 21 0 4296 202 87 50 chr13 78182780 78183920 -23689249 + L1MC1 LINE L1 22 1203 -5223 3233 207 68 22 chr13 78183892 78185223 -23687946 + L1MC1 LINE L1 1471 2781 -3645 * 2877 177 43 3 chr13 78185207 78185783 -23687386 + L1MC1 LINE L1 5605 6203 -410 * 283 230 108 14 chr13 78185784 78185858 -23687311 - Tigger5 DNA MER2_type -1 2322 2242 * 399 253 0 0 chr13 78185848 78185927 -23687242 + Tigger5 DNA MER2_type 2242 2320 -3 378 279 0 0 chr13 78185927 78186005 -23687164 - Tigger5 DNA MER2_type -2245 78 1 1918 181 26 8 chr13 78186005 78186391 -23686778 + L1MC1 LINE L1 6202 6594 -19 25 75 0 0 chr13 78186940 78186993 -23686176 + AT_rich Low_complexity Low_complexity 1 53 0 2312 101 0 0 chr13 78187020 78187318 -23685851 + AluSg SINE Alu 2 299 -11 197 349 36 0 chr13 78188101 78188184 -23684985 + L2 LINE L2 3186 3271 -1 386 232 35 70 chr13 78188235 78188377 -23684792 - MIR SINE MIR -47 215 79 185 250 68 0 chr13 78189973 78190017 -23683152 - L2 LINE L2 0 3313 3267 21 0 0 0 chr13 78190404 78190425 -23682744 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr13 78190515 78190546 -23682623 + AT_rich Low_complexity Low_complexity 1 31 0 222 273 18 0 chr13 78191414 78191469 -23681700 + (TG)n Simple_repeat Simple_repeat 1 56 0 341 395 0 0 chr13 78193441 78193593 -23679576 + C-rich Low_complexity Low_complexity 1 152 0 1967 124 0 10 chr13 78194035 78194326 -23678843 - AluSp SINE Alu -25 288 1 182 271 17 51 chr13 78194502 78194561 -23678608 + MIR SINE MIR 196 252 -10 855 232 5 42 chr13 78195244 78195434 -23677735 - MER5A DNA MER1_type 0 189 7 28 0 0 0 chr13 78196634 78196662 -23676507 + AT_rich Low_complexity Low_complexity 1 28 0 209 83 28 0 chr13 78197589 78197625 -23675544 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 89 0 0 chr13 78197671 78197727 -23675442 + AT_rich Low_complexity Low_complexity 1 56 0 1932 127 22 0 chr13 78197870 78198169 -23675000 + AluY SINE Alu 3 307 0 334 234 32 11 chr13 78199514 78199608 -23673561 + L1ME4a LINE L1 5945 6040 -81 207 0 0 0 chr13 78200128 78200151 -23673018 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2109 60 0 11 chr13 78201724 78201991 -23671178 + AluY SINE Alu 40 303 -8 287 360 0 10 chr13 78203445 78203545 -23669624 + L2 LINE L2 2082 2180 -1134 226 310 93 62 chr13 78205552 78205681 -23667488 - MER5A DNA MER1_type -53 136 4 211 269 176 25 chr13 78206609 78206728 -23666441 + MIR SINE MIR 88 224 -38 1674 70 0 9 chr13 78206839 78207052 -23666117 + AluY SINE Alu 90 300 -11 683 283 50 67 chr13 78207498 78207625 -23665544 - L1ME3A LINE L1 -222 5948 5820 2044 122 26 29 chr13 78207625 78207936 -23665233 - AluSx SINE Alu -2 310 1 683 283 50 67 chr13 78207936 78208271 -23664898 - L1ME3A LINE L1 -350 5820 5494 2051 191 65 8 chr13 78208441 78208843 -23664326 - MSTB LTR MaLR -1 425 1 832 248 46 67 chr13 78208938 78209329 -23663840 - L1MC5 LINE L1 -896 7065 6683 325 320 65 43 chr13 78209628 78210093 -23663076 - HAL1b LINE L1 -749 599 125 256 98 0 24 chr13 78211073 78211114 -23662055 + MADE1 DNA Mariner 41 80 0 29 60 0 0 chr13 78211336 78211386 -23661783 + AT_rich Low_complexity Low_complexity 1 50 0 1614 203 86 51 chr13 78211711 78212200 -23660969 - MER67D LTR ERV1 -6 508 3 288 339 144 24 chr13 78212946 78213244 -23659925 + L2 LINE L2 2336 2669 -645 2501 65 0 0 chr13 78214042 78214349 -23658820 - AluY SINE Alu -2 309 3 1809 140 3 31 chr13 78214357 78214643 -23658526 - AluSx SINE Alu -18 294 17 245 146 254 0 chr13 78214701 78214756 -23658413 + LTR33A LTR ERVL 443 511 -12 287 374 18 12 chr13 78215613 78215779 -23657390 + MER5A DNA MER1_type 23 189 0 23 33 0 0 chr13 78216354 78216384 -23656785 + AT_rich Low_complexity Low_complexity 1 30 0 363 60 0 0 chr13 78216396 78216446 -23656723 + (TA)n Simple_repeat Simple_repeat 2 51 0 180 152 0 0 chr13 78216722 78216755 -23656414 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 185 236 18 18 chr13 78216755 78216810 -23656359 - L2 LINE L2 0 3313 3259 189 333 56 22 chr13 78216899 78216989 -23656180 - L2 LINE L2 -181 3091 2999 201 305 203 17 chr13 78217126 78217244 -23655925 - L2 LINE L2 -581 2733 2594 26 50 0 0 chr13 78217349 78217389 -23655780 + AT_rich Low_complexity Low_complexity 1 40 0 2026 144 3 0 chr13 78217629 78217928 -23655241 + AluSx SINE Alu 1 300 -12 1633 130 109 24 chr13 78218245 78218583 -23654586 - THE1C LTR MaLR 0 375 9 7208 136 38 7 chr13 78218686 78219788 -23653381 - THE1C-int LTR MaLR -53 1527 392 1910 159 43 32 chr13 78219838 78220208 -23652961 - THE1C LTR MaLR 0 375 2 302 282 155 40 chr13 78220271 78220445 -23652724 - MIR SINE MIR -36 226 33 245 333 29 40 chr13 78220986 78221160 -23652009 - MER90 LTR ERV1 -8 606 435 324 0 0 0 chr13 78221402 78221438 -23651731 + (TC)n Simple_repeat Simple_repeat 1 36 0 * 399 41 0 0 chr13 78221437 78221486 -23651683 + (CA)n Simple_repeat Simple_repeat 1 49 0 2584 129 20 0 chr13 78222637 78223229 -23649940 + L1PA8A LINE L1 4960 5558 -573 376 258 0 0 chr13 78223661 78223750 -23649419 - MLT1K LTR MaLR 0 588 500 249 338 12 0 chr13 78223977 78224057 -23649112 - MLT1K LTR MaLR -357 231 151 423 100 0 0 chr13 78224214 78224284 -23648885 + (CA)n Simple_repeat Simple_repeat 2 71 0 1397 252 110 19 chr13 78224624 78225143 -23648026 + HsTC2c DNA Tc2 164 729 0 231 323 112 25 chr13 78225215 78225376 -23647793 + MIR3 SINE MIR 34 208 0 25 31 0 0 chr13 78226362 78226394 -23646775 + AT_rich Low_complexity Low_complexity 1 32 0 4365 6 0 0 chr13 78226420 78226908 -23646261 + L1HS LINE L1 5662 6149 -6 31 0 0 0 chr13 78226908 78226939 -23646230 + AT_rich Low_complexity Low_complexity 1 31 0 422 315 35 48 chr13 78227045 78227508 -23645661 + L1MEc LINE L1 1354 1810 -4586 808 247 61 167 chr13 78227819 78228115 -23645054 - MER77 LTR ERV1 -1 604 278 2253 75 0 0 chr13 78228115 78228441 -23644728 - AluY SINE Alu 0 326 1 261 57 0 0 chr13 78228445 78228480 -23644689 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 808 247 61 167 chr13 78228480 78228827 -23644342 - MER77 LTR ERV1 -330 275 54 1987 110 20 7 chr13 78229028 78229327 -23643842 + AluSx SINE Alu 1 303 -9 270 81 0 0 chr13 78229501 78229538 -23643631 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2350 39 4 4 chr13 78229548 78229828 -23643341 - AluY SINE Alu -3 308 29 6035 244 63 30 chr13 78230190 78231912 -23641257 - MER77-int LTR ERV1 -58 4133 2356 414 245 187 40 chr13 78231914 78232363 -23640806 + L1MEc LINE L1 2305 2819 -3396 3504 76 11 0 chr13 78233147 78233595 -23639574 - MLT2A2 LTR ERVL 0 453 1 684 216 126 0 chr13 78234955 78235122 -23638047 + MER5A DNA MER1_type 2 189 0 602 157 0 26 chr13 78235325 78235440 -23637729 + MLT1A1 LTR MaLR 8 119 -246 187 262 140 56 chr13 78235448 78235555 -23637614 - L2 LINE L2 -173 3140 3025 414 304 29 22 chr13 78235600 78235738 -23637431 - MIR SINE MIR -94 168 30 1223 234 125 31 chr13 78238065 78238489 -23634680 + MLT1D LTR MaLR 7 470 -35 1015 178 153 46 chr13 78239649 78239930 -23633239 - LOR1b LTR ERV1 -9 452 142 214 139 0 0 chr13 78239989 78240025 -23633144 - L2 LINE L2 -16 3297 3262 193 188 62 172 chr13 78240038 78240090 -23633079 - MIR SINE MIR -64 144 88 2168 119 3 0 chr13 78240090 78240392 -23632777 + AluSx SINE Alu 1 303 -9 193 188 62 172 chr13 78240392 78240467 -23632702 - MIR SINE MIR -120 88 31 2124 166 55 38 chr13 78240642 78241119 -23632050 + MER31A LTR ERV1 1 485 0 1668 157 0 34 chr13 78241304 78241598 -23631571 - AluJo SINE Alu -6 306 23 623 216 90 53 chr13 78242636 78242808 -23630361 - HAL1 LINE L1 -143 2364 2175 4132 122 6 11 chr13 78242808 78243445 -23629724 + MER51A LTR ERV1 1 634 0 623 216 90 53 chr13 78243445 78243573 -23629596 - HAL1 LINE L1 -332 2175 2053 321 243 59 44 chr13 78243573 78243698 -23629471 - L2 LINE L2 -4 3309 3183 552 297 62 10 chr13 78243698 78243890 -23629279 + MIR SINE MIR 2 203 -59 302 291 141 52 chr13 78244070 78244396 -23628773 - HAL1 LINE L1 -1521 986 632 237 364 0 0 chr13 78244397 78244485 -23628684 - HAL1 LINE L1 -2009 498 411 2524 185 26 35 chr13 78247821 78248388 -23624781 + MER68 LTR ERV1 1 562 0 1590 165 78 28 chr13 78249315 78249672 -23623497 + THE1C LTR MaLR 1 375 0 1684 132 94 3 chr13 78250005 78250292 -23622877 - AluSq SINE Alu 0 313 1 331 333 111 65 chr13 78250312 78250681 -23622488 + HAL1 LINE L1 239 624 -1883 523 299 47 23 chr13 78250728 78251029 -23622140 + HAL1 LINE L1 646 953 -1554 228 171 61 73 chr13 78251147 78251229 -23621940 - L1MA5 LINE L1 -4 6296 6216 2132 123 56 3 chr13 78251234 78251591 -23621578 - Tigger2 DNA MER2_type -63 2655 2280 182 108 54 0 chr13 78251690 78251727 -23621442 + A-rich Low_complexity Low_complexity 3 41 0 355 304 48 6 chr13 78251968 78252136 -23621033 + HAL1 LINE L1 1535 1709 -798 508 254 40 23 chr13 78252404 78252581 -23620588 + HAL1 LINE L1 2057 2236 -271 22 0 0 0 chr13 78253149 78253171 -23619998 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr13 78253308 78253364 -23619805 + AT_rich Low_complexity Low_complexity 1 56 0 235 247 91 52 chr13 78254133 78254210 -23618959 + L2 LINE L2 3168 3247 -25 287 321 161 16 chr13 78254387 78254580 -23618589 + MIR SINE MIR 20 240 -22 2259 94 10 0 chr13 78255078 78255386 -23617783 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr13 78255535 78255566 -23617603 + AT_rich Low_complexity Low_complexity 1 31 0 464 193 18 35 chr13 78256863 78256977 -23616192 - MER34 LTR ERV1 0 542 431 6551 34 0 0 chr13 78257050 78257834 -23615335 - L1PA4 LINE L1 0 6155 5372 278 292 41 35 chr13 78257835 78258006 -23615163 - MER34 LTR ERV1 -114 428 257 590 305 46 35 chr13 78258036 78258295 -23614874 - MER34 LTR ERV1 -274 268 7 21 36 0 0 chr13 78258763 78258791 -23614378 + AT_rich Low_complexity Low_complexity 1 28 0 2124 125 0 0 chr13 78260626 78260907 -23612262 - AluSc SINE Alu -24 285 5 3382 189 70 70 chr13 78261046 78262766 -23610403 - L1MB7 LINE L1 -8 6176 4466 1829 139 17 3 chr13 78264019 78264306 -23608863 - AluSx SINE Alu -21 291 1 2053 143 0 0 chr13 78265455 78265755 -23607414 + AluSx SINE Alu 3 302 -10 34 0 0 0 chr13 78266082 78266116 -23607053 + AT_rich Low_complexity Low_complexity 1 34 0 946 351 109 10 chr13 78266874 78267555 -23605614 - L2 LINE L2 -632 2682 1935 2250 101 0 3 chr13 78268260 78268557 -23604612 + AluSc SINE Alu 1 296 -13 792 359 62 15 chr13 78268635 78269036 -23604133 + L2 LINE L2 2894 3313 0 222 345 24 0 chr13 78269045 78269129 -23604040 + MIR SINE MIR 106 191 -71 180 421 45 8 chr13 78270779 78270912 -23602257 - MIR SINE MIR -73 189 52 649 286 35 5 chr13 78271888 78272087 -23601082 + MIR SINE MIR 10 214 -48 23 68 0 0 chr13 78272484 78272528 -23600641 + AT_rich Low_complexity Low_complexity 1 44 0 1159 109 45 10 chr13 78272528 78272729 -23600440 - L1MA3 LINE L1 0 6305 6098 184 268 24 49 chr13 78275113 78275195 -23597974 + MIR SINE MIR 172 251 -11 309 296 17 35 chr13 78277614 78277729 -23595440 - LTR33 LTR ERVL -307 214 102 4871 190 38 55 chr13 78278114 78278375 -23594794 + L1 LINE L1 2961 3225 -2921 2122 108 3 3 chr13 78278375 78278661 -23594508 - AluSp SINE Alu -27 286 1 4871 190 38 55 chr13 78278661 78279626 -23593543 + L1 LINE L1 3225 4166 -1980 1723 183 59 17 chr13 78279629 78280038 -23593131 + L1MA7 LINE L1 5866 6291 0 352 260 87 8 chr13 78280055 78280182 -23592987 + HAL1 LINE L1 1431 1567 -940 35 71 0 0 chr13 78280313 78280383 -23592786 + AT_rich Low_complexity Low_complexity 1 70 0 22 0 0 0 chr13 78280509 78280531 -23592638 + AT_rich Low_complexity Low_complexity 1 22 0 471 318 101 26 chr13 78280612 78281219 -23591950 + L1M4 LINE L1 4026 4677 -1469 268 253 40 20 chr13 78281689 78281788 -23591381 + L1M LINE L1 5255 5355 -1004 972 234 91 43 chr13 78281903 78281968 -23591201 - MER2 DNA MER2_type 0 345 285 2263 144 11 11 chr13 78281968 78282343 -23590826 - THE1C LTR MaLR 0 375 1 972 234 91 43 chr13 78282343 78282606 -23590563 - MER2 DNA MER2_type -60 285 1 21 0 0 0 chr13 78283950 78283971 -23589198 + AT_rich Low_complexity Low_complexity 1 21 0 670 188 45 0 chr13 78284348 78284481 -23588688 - L1MB1 LINE L1 -154 6014 5876 22 56 0 0 chr13 78284482 78284518 -23588651 + AT_rich Low_complexity Low_complexity 1 36 0 2233 119 0 0 chr13 78284957 78285268 -23587901 - AluY SINE Alu 0 311 1 637 228 76 19 chr13 78286217 78286375 -23586794 + FAM SINE Alu 1 167 -18 21 71 0 0 chr13 78290553 78290595 -23582574 + AT_rich Low_complexity Low_complexity 1 42 0 210 375 83 7 chr13 78291151 78291295 -23581874 - L3 LINE CR1 -856 721 567 318 130 0 0 chr13 78291326 78291380 -23581789 + L1MA7 LINE L1 6068 6121 -170 582 164 33 0 chr13 78291390 78291512 -23581657 + L1MA7 LINE L1 6166 6291 0 22 0 0 0 chr13 78291702 78291724 -23581445 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr13 78291902 78291928 -23581241 + (CA)n Simple_repeat Simple_repeat 1 26 0 498 130 20 0 chr13 78291959 78292044 -23581125 + MER51C LTR ERV1 562 640 0 247 302 43 0 chr13 78292112 78292251 -23580918 - L1MDa LINE L1 -3262 3278 3134 225 0 0 0 chr13 78292273 78292298 -23580871 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 423 0 0 0 chr13 78292297 78292344 -23580825 + (TG)n Simple_repeat Simple_repeat 2 48 0 3283 216 34 8 chr13 78292481 78293191 -23579978 - MSTD-int LTR MaLR -1005 730 3 2057 200 5 18 chr13 78293191 78293591 -23579578 - MSTD LTR MaLR 0 396 2 258 279 47 41 chr13 78293598 78293770 -23579399 - L1MDa LINE L1 -4786 1754 1582 603 301 30 64 chr13 78293786 78294082 -23579087 - L1MDa LINE L1 -6217 323 38 483 297 116 76 chr13 78294471 78295013 -23578156 + L2 LINE L2 1596 2159 -1155 642 245 144 0 chr13 78295096 78295284 -23577885 + MER58A DNA MER1_type 9 223 -1 233 213 88 52 chr13 78295925 78296061 -23577108 - L1MC/D LINE L1 -2008 5800 5660 2449 78 0 3 chr13 78296816 78297125 -23576044 - AluY SINE Alu -3 308 1 2156 148 109 0 chr13 78297647 78298033 -23575136 + MSTA LTR MaLR 1 428 0 212 239 0 0 chr13 78299662 78299708 -23573461 + GA-rich Low_complexity Low_complexity 3 48 0 26 30 0 0 chr13 78300564 78300597 -23572572 + AT_rich Low_complexity Low_complexity 1 33 0 242 360 12 0 chr13 78300613 78300699 -23572470 + L2 LINE L2 3186 3272 0 444 286 165 5 chr13 78300734 78300940 -23572229 + MIR SINE MIR 23 261 -1 25 51 0 0 chr13 78301044 78301083 -23572086 + AT_rich Low_complexity Low_complexity 1 39 0 234 321 38 15 chr13 78301283 78301414 -23571755 + LTR37B LTR ERV1 6 139 -329 608 246 7 22 chr13 78301965 78302103 -23571066 - MLT1E LTR MaLR -82 511 376 424 215 210 36 chr13 78302117 78302312 -23570857 - MLT1E LTR MaLR -323 270 42 25 75 0 0 chr13 78305509 78305562 -23567607 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr13 78305615 78305644 -23567525 + AT_rich Low_complexity Low_complexity 1 29 0 5368 241 110 10 chr13 78305970 78307986 -23565183 - L1M4 LINE L1 -1002 5642 3427 728 215 0 0 chr13 78308020 78308164 -23565005 + MLT1B LTR MaLR 27 170 -220 41006 64 5 1 chr13 78308178 78314300 -23558869 + L1PA5 LINE L1 1 6141 -13 993 216 60 9 chr13 78314303 78314535 -23558634 + MLT1B LTR MaLR 144 387 -3 2120 249 75 31 chr13 78314538 78315980 -23557189 - L1M4 LINE L1 -3251 3393 829 315 311 15 7 chr13 78315995 78316130 -23557039 - L1M4 LINE L1 -6218 428 293 21 57 0 0 chr13 78316877 78316912 -23556257 + AT_rich Low_complexity Low_complexity 1 35 0 236 275 37 46 chr13 78316986 78317095 -23556074 - MIR SINE MIR 0 262 155 29 0 0 0 chr13 78317348 78317377 -23555792 + AT_rich Low_complexity Low_complexity 1 29 0 2379 116 8 0 chr13 78317878 78318240 -23554929 - L1PB1 LINE L1 -3 6864 6500 4305 111 118 98 chr13 78318242 78319577 -23553592 + pTR5 LTR ERV1 743 2429 -9 13677 184 43 15 chr13 78319577 78322353 -23550816 - L1PB1 LINE L1 -351 6516 3611 2257 112 3 3 chr13 78322353 78322666 -23550503 - AluSq SINE Alu 0 313 1 13677 184 43 15 chr13 78322666 78323633 -23549536 - L1PB1 LINE L1 -3256 3611 2673 976 157 67 26 chr13 78323656 78324024 -23549145 - L1PB1 LINE L1 -5440 1423 848 6776 129 93 91 chr13 78324024 78325584 -23547585 + pTR5 LTR ERV1 281 2295 -143 3055 237 63 6 chr13 78325584 78326389 -23546780 - L1PB1 LINE L1 -6007 856 6 799 232 48 0 chr13 78327868 78328036 -23545133 - MER5A DNA MER1_type 0 189 14 317 311 88 40 chr13 78328974 78329122 -23544047 + MIR SINE MIR 32 186 -76 1296 176 27 61 chr13 78329140 78329435 -23543734 + AluSx SINE Alu 1 285 -27 180 97 0 0 chr13 78329435 78329466 -23543703 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 280 265 48 12 chr13 78331474 78331557 -23541612 - L2 LINE L2 -2 3311 3226 2334 93 0 0 chr13 78331887 78332187 -23540982 - AluY SINE Alu -7 304 5 293 100 0 0 chr13 78332657 78332697 -23540472 - 5S rRNA rRNA -81 40 1 23 0 0 0 chr13 78332988 78333011 -23540158 + AT_rich Low_complexity Low_complexity 1 23 0 198 302 0 0 chr13 78333363 78333416 -23539753 - L2 LINE L2 -1 3271 3219 307 343 42 39 chr13 78333535 78333867 -23539302 - L2 LINE L2 -1201 2113 1781 1606 120 17 0 chr13 78334952 78335185 -23537984 + AluSg/x SINE Alu 72 308 -2 201 263 18 0 chr13 78335509 78335566 -23537603 - MIR SINE MIR -112 150 93 518 296 51 43 chr13 78335778 78336035 -23537134 + MIR SINE MIR 3 261 -1 2522 179 24 70 chr13 78337293 78337924 -23535245 - L1MA9 LINE L1 0 6312 5711 242 260 164 0 chr13 78338934 78339038 -23534131 - L2 LINE L2 -2 3311 3191 2634 102 8 0 chr13 78339171 78339532 -23533637 - THE1B LTR MaLR 0 364 1 1695 164 6 19 chr13 78342468 78342780 -23530389 - AluJb SINE Alu -4 308 1 299 365 39 17 chr13 78342809 78342990 -23530179 - L2 LINE L2 -574 2740 2556 1781 138 7 31 chr13 78345176 78345504 -23527665 - AluSx SINE Alu 0 321 1 1253 242 60 6 chr13 78345936 78346300 -23526869 + MER63B DNA MER1_type 1 384 -52 202 310 70 0 chr13 78346596 78346667 -23526502 + L2 LINE L2 3186 3261 -11 1781 117 10 45 chr13 78349016 78349306 -23523863 + AluSc SINE Alu 2 281 -28 423 0 0 0 chr13 78349306 78349353 -23523816 + (CATA)n Simple_repeat Simple_repeat 4 50 0 387 170 32 43 chr13 78349822 78349916 -23523253 - MIR SINE MIR -106 156 64 23 54 0 0 chr13 78350671 78350708 -23522461 + AT_rich Low_complexity Low_complexity 1 37 0 316 200 43 0 chr13 78350933 78351048 -23522121 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 35 0 0 chr13 78351854 78351883 -23521286 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr13 78352742 78352770 -23520399 + (CA)n Simple_repeat Simple_repeat 2 29 0 1245 247 38 30 chr13 78353219 78353659 -23519510 + L1ME1 LINE L1 5732 6163 -3 21 82 0 0 chr13 78354004 78354053 -23519116 + AT_rich Low_complexity Low_complexity 1 49 0 207 320 57 41 chr13 78355748 78355870 -23517299 + L2 LINE L2 3190 3313 0 2410 187 7 5 chr13 78356778 78357195 -23515974 - MSTB LTR MaLR -7 419 2 21 0 0 0 chr13 78358633 78358654 -23514515 + AT_rich Low_complexity Low_complexity 1 21 0 187 381 45 40 chr13 78359994 78360170 -23512999 + MIR SINE MIR 11 187 -75 3893 181 53 106 chr13 78360460 78361533 -23511636 + L1MC1 LINE L1 19 1032 -5394 227 31 31 0 chr13 78361533 78361565 -23511604 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 3893 181 53 106 chr13 78361565 78361610 -23511559 + L1MC1 LINE L1 1032 1078 -5348 2427 129 6 6 chr13 78361706 78362070 -23511099 - THE1B LTR MaLR 0 364 1 9254 126 54 14 chr13 78362070 78363570 -23509599 - THE1B-int LTR MaLR 0 1580 21 310 143 0 32 chr13 78363555 78363618 -23509551 - THE1B-int LTR MaLR -1540 111 51 * 354 194 0 15 chr13 78364446 78364513 -23508656 - AluJb SINE Alu -185 117 52 1333 159 0 0 chr13 78364518 78364719 -23508450 - THE1B LTR MaLR -163 201 1 4872 192 54 25 chr13 78364755 78366658 -23506511 + L1MC1 LINE L1 4644 6599 -14 208 108 46 31 chr13 78366739 78366804 -23506365 + (TA)n Simple_repeat Simple_repeat 2 67 0 597 293 55 70 chr13 78367382 78367828 -23505341 + L1ME3A LINE L1 5318 5756 -414 2754 19 0 0 chr13 78367828 78368138 -23505031 + AluYb8 SINE Alu 1 310 -8 597 293 55 70 chr13 78368138 78368250 -23504919 + L1ME3A LINE L1 5756 5868 -302 21 57 0 0 chr13 78368458 78368493 -23504676 + AT_rich Low_complexity Low_complexity 1 35 0 272 310 122 48 chr13 78369425 78369777 -23503392 - L2 LINE L2 -117 3196 2819 36 40 0 0 chr13 78369830 78369880 -23503289 + AT_rich Low_complexity Low_complexity 1 50 0 1351 306 136 10 chr13 78370217 78370903 -23502266 + L2 LINE L2 372 1143 -2171 1150 278 120 20 chr13 78371076 78371536 -23501633 - L2 LINE L2 -414 2900 2395 5108 142 37 59 chr13 78371549 78372395 -23500774 - L1PA13 LINE L1 -2 6161 5298 1735 143 196 0 chr13 78372395 78372753 -23500416 - MSTA LTR MaLR 0 428 1 8703 188 18 5 chr13 78372753 78374382 -23498787 - MSTA-int LTR MaLR 0 1651 1 2042 138 140 8 chr13 78374382 78374760 -23498409 - MSTA LTR MaLR 0 428 1 5108 142 37 59 chr13 78374760 78375059 -23498110 - L1PA13 LINE L1 -862 5301 5032 3419 178 0 13 chr13 78375059 78375682 -23497487 + L1P LINE L1 3730 4344 -1802 354 338 52 14 chr13 78375899 78376109 -23497060 - Charlie8 DNA MER1_type -2198 219 2 214 369 64 28 chr13 78376140 78376281 -23496888 + MIR3 SINE MIR 31 176 -32 1632 275 79 44 chr13 78377758 78378172 -23494997 + L1MEc LINE L1 210 608 -5788 1783 130 67 57 chr13 78378172 78378503 -23494666 - MER1B DNA MER1_type 0 337 4 1632 275 79 44 chr13 78378503 78378863 -23494306 + L1MEc LINE L1 608 1011 -5385 2379 55 0 7 chr13 78379298 78379590 -23493579 + AluY SINE Alu 1 290 -21 21 57 0 0 chr13 78379597 78379632 -23493537 + AT_rich Low_complexity Low_complexity 1 35 0 6218 160 63 11 chr13 78379905 78381075 -23492094 - Tigger3b DNA MER2_type 0 1231 1 1842 112 0 0 chr13 78382851 78383102 -23490067 - AluSx SINE Alu -29 283 33 29 28 0 0 chr13 78384022 78384058 -23489111 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 78384139 78384163 -23489006 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 78384190 78384211 -23488958 + AT_rich Low_complexity Low_complexity 1 21 0 2359 118 15 0 chr13 78384466 78384806 -23488363 - THE1C LTR MaLR -30 345 1 1333 230 72 17 chr13 78384830 78385191 -23487978 - LTR52 LTR ERVL -9 412 32 5010 272 64 30 chr13 78385795 78388228 -23484941 + L1M3b LINE L1 4 2231 -4119 552 19 85 0 chr13 78388228 78388334 -23484835 + (TA)n Simple_repeat Simple_repeat 1 115 0 5010 272 64 30 chr13 78388334 78389140 -23484029 + L1M3b LINE L1 2231 3009 -3341 1672 171 25 0 chr13 78389671 78389951 -23483218 - AluSx SINE Alu -25 287 1 27 62 0 0 chr13 78391213 78391261 -23481908 + AT_rich Low_complexity Low_complexity 1 48 0 2020 108 0 17 chr13 78391337 78391624 -23481545 + AluSx SINE Alu 1 282 -30 186 71 0 0 chr13 78391626 78391654 -23481515 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1991 211 57 69 chr13 78391741 78391951 -23481218 + MLT1E2 LTR MaLR 1 212 -414 2140 132 32 22 chr13 78391951 78392322 -23480847 - THE1C LTR MaLR 0 375 1 1991 211 57 69 chr13 78392322 78392745 -23480424 + MLT1E2 LTR MaLR 212 626 0 22 0 0 0 chr13 78392814 78392836 -23480333 + AT_rich Low_complexity Low_complexity 1 22 0 576 265 7 27 chr13 78394815 78394962 -23478207 + MER63A DNA MER1_type 55 198 -12 3242 8 0 0 chr13 78394973 78395341 -23477828 + L1PA2 LINE L1 5788 6155 0 21 0 0 0 chr13 78395344 78395365 -23477804 + AT_rich Low_complexity Low_complexity 1 21 0 3123 268 89 60 chr13 78395468 78396030 -23477139 - MER89-int LTR ERV1 -1870 4931 4387 890 232 95 55 chr13 78396030 78396409 -23476760 - MLT2C1 LTR ERVL 0 397 4 3123 268 89 60 chr13 78396409 78397208 -23475961 - MER89-int LTR ERV1 -2414 4387 3526 2157 111 3 7 chr13 78397208 78397514 -23475655 + AluSg SINE Alu 1 305 -5 3123 268 89 60 chr13 78397514 78397545 -23475624 - MER89-int LTR ERV1 -3275 3526 3497 235 324 15 0 chr13 78397679 78397747 -23475422 + L2 LINE L2 3107 3175 -97 238 322 12 88 chr13 78398482 78398653 -23474516 - MLT1K LTR MaLR -162 426 269 186 257 40 99 chr13 78399469 78399570 -23473599 - MIR SINE MIR -83 179 85 257 128 0 0 chr13 78400489 78400528 -23472641 + MADE1 DNA Mariner 42 80 0 3521 21 61 0 chr13 78400968 78401396 -23471773 + L1PA3 LINE L1 5702 6155 0 2637 124 2 2 chr13 78401886 78402289 -23470880 + L1PB1 LINE L1 5404 5806 -345 248 154 24 32 chr13 78402291 78402414 -23470755 + (TA)n Simple_repeat Simple_repeat 2 123 0 489 58 0 0 chr13 78402421 78402490 -23470679 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 2161 120 11 17 chr13 78402491 78402849 -23470320 + L1PB1 LINE L1 5794 6149 -2 21 0 0 0 chr13 78403002 78403023 -23470146 + AT_rich Low_complexity Low_complexity 1 21 0 2326 43 40 17 chr13 78403203 78403505 -23469664 + AluY SINE Alu 1 309 -2 29 47 0 0 chr13 78404237 78404280 -23468889 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr13 78405656 78405692 -23467477 + AT_rich Low_complexity Low_complexity 1 36 0 1122 142 4 0 chr13 78405785 78406062 -23467107 + (TA)n Simple_repeat Simple_repeat 1 278 0 373 281 0 0 chr13 78406065 78406154 -23467015 - L1MC4 LINE L1 -1339 6703 6615 256 253 0 22 chr13 78406159 78406250 -23466919 + L1MC4 LINE L1 6614 6702 -1340 233 267 0 22 chr13 78406217 78406307 -23466862 - L1MC4 LINE L1 -1339 6703 6616 * 1754 180 64 0 chr13 78407559 78407903 -23465266 + MER47A DNA MER2_type 1 366 0 754 336 13 4 chr13 78408163 78408401 -23464768 + MIR SINE MIR 23 262 0 24 32 0 0 chr13 78408498 78408529 -23464640 + AT_rich Low_complexity Low_complexity 1 31 0 2271 222 56 13 chr13 78408990 78409530 -23463639 - MER90 LTR ERV1 -10 565 3 5818 109 10 22 chr13 78412764 78413843 -23459326 + L1PA14 LINE L1 4879 5945 -216 1850 141 10 3 chr13 78413843 78414140 -23459029 + AluSx SINE Alu 1 299 -13 5818 109 10 22 chr13 78414140 78414350 -23458819 + L1PA14 LINE L1 5945 6156 -5 340 265 71 0 chr13 78414500 78414598 -23458571 + L3 LINE CR1 1371 1475 -102 1296 234 30 25 chr13 78414761 78415124 -23458045 + MLT1A1 LTR MaLR 1 365 0 3585 233 114 49 chr13 78415458 78417008 -23456161 - L1MCa LINE L1 -3867 2559 1112 872 158 0 0 chr13 78417008 78417147 -23456022 - L1PA10 LINE L1 -11 6157 6019 3585 233 114 49 chr13 78417147 78417636 -23455533 - L1MCa LINE L1 -5314 1112 656 1789 174 33 41 chr13 78417636 78418003 -23455166 + THE1B LTR MaLR 1 364 0 3585 233 114 49 chr13 78418003 78418259 -23454910 - L1MCa LINE L1 -5770 656 6 24 0 0 0 chr13 78418609 78418633 -23454536 + AT_rich Low_complexity Low_complexity 1 24 0 2656 0 0 0 chr13 78418639 78418925 -23454244 + AluYa5 SINE Alu 18 303 -8 224 298 88 70 chr13 78419611 78419725 -23453444 - L2 LINE L2 -1 3271 3156 258 254 48 0 chr13 78419869 78419932 -23453237 - MIR3 SINE MIR -11 197 132 280 197 16 0 chr13 78422966 78423027 -23450142 - HsTC2 DNA Tc2 -1070 828 767 545 124 146 0 chr13 78423034 78423123 -23450046 - MER1B DNA MER1_type -72 267 166 1880 148 26 32 chr13 78423801 78424140 -23449029 + MER1B DNA MER1_type 1 337 0 21 89 0 0 chr13 78424395 78424451 -23448718 + AT_rich Low_complexity Low_complexity 1 56 0 331 245 31 10 chr13 78424766 78424864 -23448305 + L2 LINE L2 3208 3307 -6 26 0 0 0 chr13 78425014 78425040 -23448129 + AT_rich Low_complexity Low_complexity 1 26 0 292 240 166 23 chr13 78425082 78425242 -23447927 - MIR SINE MIR -68 140 10 3180 147 69 9 chr13 78425379 78425945 -23447224 - MER6A DNA MER2_type -5 600 1 24 0 0 0 chr13 78428280 78428304 -23444865 + AT_rich Low_complexity Low_complexity 1 24 0 1277 126 3 25 chr13 78428457 78428723 -23444446 + MER1B DNA MER1_type 1 100 -105 253 294 64 0 chr13 78429089 78429198 -23443971 - L1MC4 LINE L1 -1340 6702 6587 241 275 84 0 chr13 78429176 78429307 -23443862 + L1MC4a LINE L1 4574 4715 -1431 * 334 292 114 72 chr13 78429333 78429822 -23443347 + L1MC4a LINE L1 4744 5253 -893 600 307 65 35 chr13 78430068 78430439 -23442730 + L1MC4a LINE L1 5554 5935 -1873 1404 154 21 107 chr13 78431427 78431764 -23441405 + AluYb8 SINE Alu 1 308 -10 513 57 11 102 chr13 78432358 78432446 -23440723 - MADE1 DNA Mariner 0 80 1 365 220 31 136 chr13 78432710 78432901 -23440268 - L2 LINE L2 0 3313 3143 1337 223 46 25 chr13 78432905 78433228 -23439941 + MER58B DNA MER1_type 12 341 0 388 296 80 25 chr13 78433522 78433684 -23439485 - MIR SINE MIR -72 190 20 369 350 103 41 chr13 78434525 78434697 -23438472 - L2 LINE L2 0 3313 3153 2389 90 0 0 chr13 78434697 78434997 -23438172 + AluSx SINE Alu 1 300 -12 369 350 103 41 chr13 78434997 78435119 -23438050 - L2 LINE L2 -160 3153 3040 1558 184 106 3 chr13 78435119 78435450 -23437719 - MLT1A1 LTR MaLR 0 365 1 369 350 103 41 chr13 78435450 78436156 -23437013 - L2 LINE L2 -273 3040 2239 442 320 100 44 chr13 78436273 78436614 -23436555 - L2 LINE L2 -1315 1999 1640 1943 208 20 2 chr13 78436925 78437368 -23435801 + L1MB7 LINE L1 4870 5320 -826 305 93 93 0 chr13 78437428 78437482 -23435687 + Tigger5 DNA MER2_type 2242 2300 -23 413 188 0 25 chr13 78437568 78437648 -23435521 - Tigger5 DNA MER2_type -2245 78 1 3484 189 42 46 chr13 78437652 78438070 -23435099 + L1MB7 LINE L1 5325 5743 -441 1611 159 0 58 chr13 78438070 78438379 -23434790 + AluJb SINE Alu 6 296 -16 3484 189 42 46 chr13 78438379 78438824 -23434345 + L1MB7 LINE L1 5743 6184 0 3902 88 37 14 chr13 78440831 78441420 -23431749 - L1MA2 LINE L1 0 6304 5702 1226 151 151 23 chr13 78441821 78441892 -23431277 - MSTA LTR MaLR 0 428 367 2590 43 0 0 chr13 78441892 78442195 -23430974 + AluY SINE Alu 1 303 -8 1226 151 151 23 chr13 78442195 78442382 -23430787 - MSTA LTR MaLR -61 367 137 396 0 0 0 chr13 78442963 78443007 -23430162 + (CA)n Simple_repeat Simple_repeat 1 44 0 1684 202 47 12 chr13 78443412 78443753 -23429416 - MLT1A1 LTR MaLR -12 353 1 21 57 0 0 chr13 78444830 78444865 -23428304 + AT_rich Low_complexity Low_complexity 1 35 0 345 47 0 0 chr13 78445278 78445321 -23427848 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 333 235 62 12 chr13 78445322 78445403 -23427766 - L2 LINE L2 -16 3256 3172 440 324 129 9 chr13 78445862 78446072 -23427097 - MIR SINE MIR -8 254 20 249 284 75 22 chr13 78446113 78446247 -23426922 - HAL1 LINE L1 -134 2373 2233 234 258 54 0 chr13 78446304 78446397 -23426772 - L1MC4a LINE L1 -1850 5958 5861 21 0 0 0 chr13 78447021 78447042 -23426127 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 78447181 78447229 -23425940 + AT_rich Low_complexity Low_complexity 1 48 0 50 99 0 0 chr13 78449857 78450019 -23423150 + AT_rich Low_complexity Low_complexity 1 162 0 252 322 0 0 chr13 78450202 78450289 -23422880 + L1ME LINE L1 5736 5822 -299 1438 131 56 0 chr13 78450319 78450587 -23422582 + L1MA8 LINE L1 6005 6287 -4 210 294 118 24 chr13 78450627 78450712 -23422457 + L2 LINE L2 3160 3252 -20 602 342 92 59 chr13 78451612 78452433 -23420736 - L2 LINE L2 -2 3311 2460 1417 212 45 14 chr13 78452443 78452802 -23420367 + MLT1A2 LTR MaLR 1 370 -4 1696 110 41 76 chr13 78452832 78453149 -23420020 - AluY SINE Alu -5 306 1 229 286 159 32 chr13 78453162 78453288 -23419881 - L2 LINE L2 -865 2449 2308 564 323 94 47 chr13 78453383 78453938 -23419231 - L2 LINE L2 -1438 1876 1296 381 344 153 13 chr13 78453943 78454321 -23418848 - L2 LINE L2 -2440 874 444 229 304 72 22 chr13 78454393 78454531 -23418638 - L2 LINE L2 -1971 1343 1199 260 256 46 0 chr13 78454541 78454615 -23418554 - MLT1H1 LTR MaLR -449 146 35 217 353 59 8 chr13 78455170 78455289 -23417880 - MIR3 SINE MIR -41 167 43 2045 135 0 0 chr13 78455399 78455688 -23417481 - AluSx SINE Alu -22 290 2 473 204 26 26 chr13 78456862 78456975 -23416194 + LTR40a LTR ERVL 407 519 0 206 286 0 0 chr13 78457280 78457329 -23415840 + L2 LINE L2 3186 3234 -38 756 280 36 18 chr13 78458088 78458313 -23414856 - MLT1E2 LTR MaLR 0 626 398 737 230 180 20 chr13 78458308 78458602 -23414567 - MLT1E1 LTR MaLR -347 307 4 * 192 304 0 0 chr13 78458604 78458650 -23414519 - L2 LINE L2 -50 3222 3177 237 33 0 0 chr13 78458854 78458884 -23414285 + (TA)n Simple_repeat Simple_repeat 2 31 0 1499 346 46 22 chr13 78458995 78459907 -23413262 - L2 LINE L2 -556 2758 1825 354 346 31 0 chr13 78459941 78460071 -23413098 - L2 LINE L2 -2927 387 254 4962 154 19 7 chr13 78460570 78461550 -23411619 - L1PA16 LINE L1 -3 6163 5135 2001 126 11 0 chr13 78461550 78461835 -23411334 - AluSx SINE Alu -16 296 9 4962 154 19 7 chr13 78461835 78461867 -23411302 - L1PA16 LINE L1 -1031 5135 5105 2270 215 8 9 chr13 78461871 78462396 -23410773 + L1 LINE L1 4199 4722 -1424 2258 179 19 5 chr13 78463430 78463848 -23409321 - MSTB LTR MaLR 0 426 3 196 332 218 34 chr13 78464335 78464633 -23408536 - L2 LINE L2 -2016 1298 946 377 238 12 12 chr13 78464815 78464899 -23408270 - L2 LINE L2 -2 3311 3228 225 0 0 0 chr13 78465190 78465215 -23407954 + (A)n Simple_repeat Simple_repeat 1 25 0 280 173 0 40 chr13 78465622 78465697 -23407472 + CT-rich Low_complexity Low_complexity 2 73 0 290 67 22 0 chr13 78465768 78465813 -23407356 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 3986 32 0 0 chr13 78465813 78466281 -23406888 - L1PA3 LINE L1 -24 6131 5664 564 210 109 0 chr13 78466284 78466403 -23406766 - FRAM SINE Alu -44 132 1 6573 133 9 29 chr13 78466428 78467812 -23405357 - L1MA2 LINE L1 0 6304 4950 22 56 0 0 chr13 78468414 78468450 -23404719 + AT_rich Low_complexity Low_complexity 1 36 0 1751 165 101 0 chr13 78470707 78471035 -23402134 - MER46B DNA MER2_type 0 236 1 286 233 147 26 chr13 78471341 78471457 -23401712 + MIR SINE MIR 123 252 -10 1967 110 0 4 chr13 78473067 78473340 -23399829 - AluSx SINE Alu -37 275 4 220 259 95 88 chr13 78473344 78473491 -23399678 - MIR SINE MIR -112 150 3 313 266 92 37 chr13 78475014 78475123 -23398046 - L2 LINE L2 -10 3303 3189 249 336 76 25 chr13 78476770 78476889 -23396280 + L2 LINE L2 2291 2415 -899 771 229 18 6 chr13 78476978 78477148 -23396021 - MER45A DNA AcHobo -2 176 5 1035 193 4 103 chr13 78477265 78477326 -23395843 - MER20 DNA MER1_type 0 219 154 2923 127 17 4 chr13 78477326 78477799 -23395370 - L1PA16 LINE L1 -9 6157 5679 1035 193 4 103 chr13 78477799 78477980 -23395189 - MER20 DNA MER1_type -65 154 1 2006 108 18 0 chr13 78478794 78479072 -23394097 - AluSq SINE Alu -30 283 1 213 241 0 0 chr13 78479093 78479147 -23394022 + GA-rich Low_complexity Low_complexity 2 55 0 23 33 0 0 chr13 78480611 78480641 -23392528 + AT_rich Low_complexity Low_complexity 1 30 0 208 111 56 0 chr13 78480882 78480918 -23392251 + CT-rich Low_complexity Low_complexity 4 41 0 1878 283 93 39 chr13 78481718 78481996 -23391173 - L2 LINE L2 0 3313 3052 1381 211 24 49 chr13 78481996 78482366 -23390803 + MLT1A1 LTR MaLR 5 365 0 1878 283 93 39 chr13 78482366 78483168 -23390001 - L2 LINE L2 -261 3052 2179 1483 114 5 0 chr13 78483193 78483404 -23389765 - AluSp SINE Alu -15 298 87 304 329 34 7 chr13 78483812 78483958 -23389211 + MIR3 SINE MIR 53 202 -6 290 357 62 11 chr13 78484466 78484642 -23388527 - MIR SINE MIR -27 235 48 275 250 18 9 chr13 78485313 78485425 -23387744 + (TA)n Simple_repeat Simple_repeat 2 114 0 998 122 16 4 chr13 78486295 78486474 -23386695 + L1MA7 LINE L1 5852 6037 -263 1097 138 32 0 chr13 78486478 78486667 -23386502 + L1MA7 LINE L1 6094 6288 -3 752 263 76 38 chr13 78487961 78488197 -23384972 - MIR SINE MIR -16 246 2 182 402 11 0 chr13 78489589 78489681 -23383488 + L3 LINE CR1 1468 1560 -17 989 119 0 0 chr13 78489681 78489815 -23383354 - AluSg/x SINE Alu -10 299 166 246 416 26 0 chr13 78489859 78490013 -23383156 - MIR3 SINE MIR -13 195 38 618 54 0 33 chr13 78490835 78490927 -23382242 - L1PA8 LINE L1 0 6172 6084 215 157 20 0 chr13 78492064 78492115 -23381054 + (TA)n Simple_repeat Simple_repeat 1 52 0 281 386 7 7 chr13 78492571 78492711 -23380458 + MIR SINE MIR 21 160 -102 243 400 25 8 chr13 78492740 78492860 -23380309 - L2 LINE L2 -6 3266 3145 4173 18 0 2 chr13 78495593 78496087 -23377082 - L1PA3 LINE L1 -1410 4736 4244 7712 20 0 0 chr13 78496089 78497567 -23375602 + L1PA3 LINE L1 4719 6190 0 290 289 0 36 chr13 78499387 78499470 -23373699 + MIR SINE MIR 48 127 -135 746 351 115 4 chr13 78499534 78500055 -23373114 - L2 LINE L2 -1003 2311 1733 294 264 14 0 chr13 78500335 78500407 -23372762 - MER112 DNA MER1_type -181 79 7 675 189 24 0 chr13 78500479 78500606 -23372563 + FLAM_C SINE Alu 1 130 -3 278 307 30 103 chr13 78501053 78501141 -23372028 - MLT1L LTR MaLR -200 415 322 1535 200 93 60 chr13 78501141 78501563 -23371606 + MLT1D LTR MaLR 1 443 -62 2312 90 0 13 chr13 78501563 78501875 -23371294 - AluY SINE Alu -3 308 1 1535 200 93 60 chr13 78501875 78501937 -23371232 + MLT1D LTR MaLR 443 501 -4 278 307 30 103 chr13 78501937 78502255 -23370914 - MLT1L LTR MaLR -293 322 39 2121 108 0 7 chr13 78502321 78502617 -23370552 + AluSq SINE Alu 1 294 -19 339 361 42 45 chr13 78502659 78502972 -23370197 + L2 LINE L2 2487 2798 -516 5745 139 60 33 chr13 78503297 78503326 -23369843 - Tigger3b DNA MER2_type -1798 1230 1203 2425 99 37 3 chr13 78503326 78503678 -23369491 - THE1B LTR MaLR 0 364 1 5745 139 60 33 chr13 78503678 78504321 -23368848 - Tigger3b DNA MER2_type -1825 1203 512 1431 221 0 33 chr13 78504321 78504624 -23368545 + AluJo SINE Alu 2 294 -18 5745 139 60 33 chr13 78504624 78505079 -23368090 - Tigger3b DNA MER2_type -2516 512 71 2201 112 6 10 chr13 78505198 78505510 -23367659 - AluSx SINE Alu -1 311 1 1994 126 35 0 chr13 78506168 78506454 -23366715 + AluSq SINE Alu 1 296 -17 653 214 82 41 chr13 78507183 78507336 -23365833 - MER3 DNA MER1_type -5 204 40 2051 118 24 0 chr13 78507336 78507623 -23365546 - AluSx SINE Alu -18 294 1 653 214 82 41 chr13 78507623 78507665 -23365504 - MER3 DNA MER1_type -169 40 1 25 31 0 0 chr13 78508299 78508331 -23364838 + AT_rich Low_complexity Low_complexity 1 32 0 467 234 111 54 chr13 78508331 78508541 -23364628 + L1ME3A LINE L1 5934 6155 -9 192 77 0 0 chr13 78508593 78508619 -23364550 + (TG)n Simple_repeat Simple_repeat 2 27 0 699 266 51 68 chr13 78509736 78510089 -23363080 - L2 LINE L2 -8 3305 2959 482 154 0 0 chr13 78510625 78510703 -23362466 + MADE1 DNA Mariner 1 78 -2 229 369 89 6 chr13 78510972 78511140 -23362029 + MIR SINE MIR 50 231 -31 21 0 0 0 chr13 78512693 78512714 -23360455 + AT_rich Low_complexity Low_complexity 1 21 0 1633 45 9 22 chr13 78512761 78512984 -23360185 + L1PA5 LINE L1 5934 6153 -1 22 0 0 0 chr13 78513003 78513025 -23360144 + AT_rich Low_complexity Low_complexity 1 22 0 222 361 125 0 chr13 78514257 78514401 -23358768 + MIR SINE MIR 91 252 -10 2546 25 0 0 chr13 78514527 78514863 -23358306 - AluY SINE Alu 0 336 1 28 0 0 0 chr13 78515135 78515163 -23358006 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 78515402 78515424 -23357745 + AT_rich Low_complexity Low_complexity 1 22 0 315 345 90 3 chr13 78515454 78515755 -23357414 - L1MCa LINE L1 -4641 1966 1443 439 322 59 44 chr13 78515836 78516109 -23357060 - L1MCa LINE L1 -5396 1020 744 829 142 7 27 chr13 78517307 78517455 -23355714 - MER50 LTR ERV1 -23 711 567 7192 122 16 3 chr13 78517455 78518594 -23354575 - L1P LINE L1 -869 5277 4124 3245 159 19 14 chr13 78518598 78519163 -23354006 - MER50 LTR ERV1 -164 570 3 1811 181 75 26 chr13 78520660 78521129 -23352040 - LTR22B LTR ERVK 0 492 1 1450 271 107 40 chr13 78521431 78522552 -23350617 + L1ME1 LINE L1 972 2141 -4399 2379 255 74 44 chr13 78522681 78523559 -23349610 + L1ME1 LINE L1 2361 3322 -3218 954 153 16 63 chr13 78523559 78523749 -23349420 - L1PB4 LINE L1 -12 6144 5964 2379 255 74 44 chr13 78523749 78524416 -23348753 + L1ME1 LINE L1 3322 3967 -2573 2092 256 74 18 chr13 78524528 78525382 -23347787 + L1ME1 LINE L1 4560 5461 -1079 207 146 0 0 chr13 78525435 78525476 -23347693 + (TA)n Simple_repeat Simple_repeat 2 42 0 2592 253 45 23 chr13 78525664 78526585 -23346584 + L1ME1 LINE L1 5602 6532 -28 31 26 0 0 chr13 78526901 78526939 -23346230 + AT_rich Low_complexity Low_complexity 1 38 0 242 340 68 37 chr13 78527445 78527636 -23345533 + L2 LINE L2 2857 3053 -219 180 158 0 0 chr13 78527827 78527865 -23345304 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 35 0 0 0 chr13 78528409 78528444 -23344725 + AT_rich Low_complexity Low_complexity 1 35 0 1973 127 3 3 chr13 78528445 78528736 -23344433 - AluSc SINE Alu -18 291 1 452 327 111 0 chr13 78528918 78529126 -23344043 - MIR SINE MIR -27 235 5 456 310 52 6 chr13 78529407 78529581 -23343588 - L2 LINE L2 -23 3290 3109 200 319 44 22 chr13 78529952 78530043 -23343126 + L2 LINE L2 3220 3312 -1 211 245 0 20 chr13 78532705 78532754 -23340415 + (TG)n Simple_repeat Simple_repeat 1 48 0 355 87 87 0 chr13 78534000 78534069 -23339100 + CT-rich Low_complexity Low_complexity 2 76 0 2139 135 20 3 chr13 78534105 78534460 -23338709 - MER46B DNA MER2_type 0 236 1 392 264 61 25 chr13 78534990 78535153 -23338016 - MIR SINE MIR -89 173 5 204 301 62 62 chr13 78535626 78535739 -23337430 - L2 LINE L2 -1 3312 3200 30 59 0 0 chr13 78536629 78536680 -23336489 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr13 78536809 78536838 -23336331 + AT_rich Low_complexity Low_complexity 1 29 0 550 194 29 14 chr13 78536935 78537074 -23336095 + Charlie7 DNA MER1_type 968 1108 -1504 245 261 0 0 chr13 78537120 78537185 -23335984 + L2 LINE L2 2198 2262 -1052 29770 57 9 1 chr13 78537207 78543248 -23329921 + L1PA5 LINE L1 39 6147 -7 534 221 89 32 chr13 78543264 78543454 -23329715 + Charlie7 DNA MER1_type 1091 1291 -1321 937 286 74 41 chr13 78543541 78544202 -23328967 + Charlie7 DNA MER1_type 1425 2107 -505 2965 150 37 2 chr13 78544288 78544802 -23328367 - Tigger1 DNA MER2_type -73 2345 1814 1098 166 45 5 chr13 78544797 78544996 -23328173 + MER2 DNA MER2_type 139 345 0 * 387 0 0 0 chr13 78545912 78545955 -23327214 + (TG)n Simple_repeat Simple_repeat 1 43 0 189 276 10 71 chr13 78546592 78546690 -23326479 - L2 LINE L2 -1 3312 3221 958 348 120 35 chr13 78546884 78547583 -23325586 - L2 LINE L2 -400 2914 2092 1416 0 29 0 chr13 78547583 78547757 -23325412 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 958 348 120 35 chr13 78547757 78548127 -23325042 - L2 LINE L2 -1222 2092 1755 22 0 0 0 chr13 78549164 78549186 -23323983 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr13 78549300 78549326 -23323843 + AT_rich Low_complexity Low_complexity 1 26 0 1663 143 14 14 chr13 78550276 78550569 -23322600 + AluJb SINE Alu 1 293 -19 470 289 52 71 chr13 78550788 78551096 -23322073 - MLT1J1 LTR MaLR -106 340 39 250 296 65 9 chr13 78551370 78551478 -23321691 + L2 LINE L2 2672 2785 -529 23 0 0 0 chr13 78551848 78551871 -23321298 + AT_rich Low_complexity Low_complexity 1 23 0 234 237 0 0 chr13 78551930 78552027 -23321142 + (TA)n Simple_repeat Simple_repeat 2 98 0 214 253 178 48 chr13 78552748 78552894 -23320275 - L2 LINE L2 0 3313 3149 380 234 16 0 chr13 78554462 78554551 -23318618 + AluJ/FLAM SINE Alu 1 72 -230 753 265 15 16 chr13 78555854 78556098 -23317071 + L1M4 LINE L1 608 839 -6329 3766 210 55 4 chr13 78556101 78557052 -23316117 + L1M4 LINE L1 2080 3078 -4090 2386 142 16 18 chr13 78557052 78557488 -23315681 + L1MA5 LINE L1 5860 6294 -6 895 278 49 38 chr13 78557500 78557949 -23315220 + L1M4 LINE L1 5757 6210 -957 21 57 0 0 chr13 78558185 78558220 -23314949 + AT_rich Low_complexity Low_complexity 1 35 0 520 284 136 34 chr13 78559900 78560302 -23312867 - MER68 LTR ERV1 -127 435 1 524 285 84 66 chr13 78560638 78561080 -23312089 - MLT1J2 LTR MaLR 0 450 1 1602 11 0 0 chr13 78562589 78562769 -23310400 - AluYb8 SINE Alu -6 312 133 3636 61 0 0 chr13 78563100 78563562 -23309607 - L1PA5 LINE L1 0 6154 5693 21 71 0 0 chr13 78564024 78564066 -23309103 + AT_rich Low_complexity Low_complexity 1 42 0 819 139 64 11 chr13 78564660 78564830 -23308339 - L1MA8 LINE L1 -6 6285 6103 2550 131 16 49 chr13 78564830 78565279 -23307890 + Tigger2a DNA MER2_type 1 434 0 819 139 64 11 chr13 78565279 78565295 -23307874 - L1MA8 LINE L1 -188 6103 6089 2199 115 3 3 chr13 78566766 78567071 -23306098 + AluSg SINE Alu 1 305 -5 1782 134 81 39 chr13 78567613 78567971 -23305198 - THE1C LTR MaLR -2 373 1 191 331 0 113 chr13 78569760 78569884 -23303285 - L2 LINE L2 -30 3242 3133 511 311 79 9 chr13 78570920 78571261 -23301908 - L1ME4a LINE L1 -191 5930 5566 255 202 184 18 chr13 78572028 78572137 -23301032 + LOR1b LTR ERV1 1 127 -334 25 0 0 0 chr13 78572352 78572377 -23300792 + AT_rich Low_complexity Low_complexity 1 25 0 2050 117 0 0 chr13 78572669 78572950 -23300219 + AluSc SINE Alu 3 283 -26 198 103 0 0 chr13 78572977 78573006 -23300163 + (TA)n Simple_repeat Simple_repeat 2 30 0 312 293 24 49 chr13 78573230 78573353 -23299816 + MIR3 SINE MIR 44 163 -45 2642 27 0 0 chr13 78573651 78573952 -23299217 - AluY SINE Alu -10 301 1 716 266 103 65 chr13 78574934 78575441 -23297728 - HAL1 LINE L1 -1874 633 108 1690 178 42 24 chr13 78577062 78577445 -23295724 - L1MA8 LINE L1 -5 6286 5897 5794 178 45 1 chr13 78578000 78580097 -23293072 + L1MA8 LINE L1 4104 6287 -4 2331 183 14 5 chr13 78580139 78580560 -23292609 + MSTA LTR MaLR 4 428 0 252 86 0 0 chr13 78581698 78581733 -23291436 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 203 167 0 0 chr13 78582280 78582316 -23290853 + (CATA)n Simple_repeat Simple_repeat 4 39 0 29 0 0 0 chr13 78583908 78583937 -23289232 + AT_rich Low_complexity Low_complexity 1 29 0 1515 202 68 59 chr13 78584097 78584553 -23288616 - MLT1C LTR MaLR 0 467 8 208 200 50 0 chr13 78585372 78585432 -23287737 + MIR SINE MIR 166 228 -34 237 244 0 150 chr13 78585636 78585763 -23287406 - LTR41 LTR ERVL -156 617 510 435 283 60 24 chr13 78586048 78586214 -23286955 - LTR41 LTR ERVL -595 178 7 283 291 165 0 chr13 78586356 78586483 -23286686 - MIR SINE MIR -1 261 114 1568 175 15 0 chr13 78587656 78587930 -23285239 - AluJo SINE Alu -14 298 21 219 296 15 89 chr13 78588314 78588449 -23284720 + MIR SINE MIR 60 184 -78 348 307 36 22 chr13 78588749 78588886 -23284283 + MIR SINE MIR 69 207 -55 455 306 32 0 chr13 78590031 78590188 -23282981 + MIR SINE MIR 73 234 -28 797 160 8 0 chr13 78590694 78590825 -23282344 - FLAM_C SINE Alu -1 132 1 1397 239 54 48 chr13 78590977 78591479 -23281690 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr13 78592834 78592855 -23280314 + AT_rich Low_complexity Low_complexity 1 21 0 198 205 0 0 chr13 78593552 78593591 -23279578 + MIR SINE MIR 218 256 -6 1773 178 0 0 chr13 78594038 78594341 -23278828 + L1PA16 LINE L1 5855 6157 -9 26 30 0 0 chr13 78594861 78594894 -23278275 + AT_rich Low_complexity Low_complexity 1 33 0 592 277 83 16 chr13 78597415 78597657 -23275512 - MIR SINE MIR -3 259 2 369 0 0 0 chr13 78598088 78598129 -23275040 + (CA)n Simple_repeat Simple_repeat 2 42 0 361 263 97 17 chr13 78598841 78599016 -23274153 + Charlie4a DNA MER1_type 127 315 -193 1389 268 66 14 chr13 78599348 78599789 -23273380 - MER74B LTR ERVL -85 537 74 390 42 0 0 chr13 78599813 78599861 -23273308 + (CA)n Simple_repeat Simple_repeat 2 49 0 225 241 17 0 chr13 78601633 78601691 -23271478 + L1P LINE L1 2749 2807 -3339 241 188 38 12 chr13 78602701 78602781 -23270388 + (TA)n Simple_repeat Simple_repeat 2 83 0 28 86 0 0 chr13 78602838 78602908 -23270261 + AT_rich Low_complexity Low_complexity 1 70 0 321 257 35 26 chr13 78603186 78603299 -23269870 - L1M4 LINE L1 -2323 3823 3710 720 243 11 6 chr13 78603334 78603515 -23269654 - L1MB7 LINE L1 -11 6173 5992 35 63 0 0 chr13 78603721 78603784 -23269385 + AT_rich Low_complexity Low_complexity 1 63 0 188 295 64 0 chr13 78604922 78605000 -23268169 - L2 LINE L2 -1029 2285 2203 189 275 130 0 chr13 78605660 78605729 -23267440 - L2 LINE L2 -1288 2026 1949 247 237 21 43 chr13 78606412 78606505 -23266664 - MER103 DNA DNA -10 156 66 253 213 149 11 chr13 78607773 78607867 -23265302 - L1ME2 LINE L1 -21 6143 6037 357 24 0 0 chr13 78608573 78608615 -23264554 + (TG)n Simple_repeat Simple_repeat 1 42 0 322 282 21 10 chr13 78608642 78608931 -23264238 + CT-rich Low_complexity Low_complexity 1 292 0 35 78 0 0 chr13 78609842 78609919 -23263250 + AT_rich Low_complexity Low_complexity 1 77 0 2547 31 6 31 chr13 78610152 78610471 -23262698 + AluY SINE Alu 1 311 0 4234 40 2 0 chr13 78611220 78611742 -23261427 - L1P LINE L1 -1103 5043 4521 558 85 51 28 chr13 78611846 78612022 -23261147 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 30 0 0 chr13 78612022 78612055 -23261114 + AT_rich Low_complexity Low_complexity 1 33 0 295 93 29 58 chr13 78612055 78612194 -23260975 + (TTATA)n Simple_repeat Simple_repeat 5 139 0 773 197 6 39 chr13 78612201 78612379 -23260790 + AluJb SINE Alu 140 311 -1 456 237 0 0 chr13 78612783 78612876 -23260293 - Tigger5 DNA MER2_type 0 2323 2231 331 203 14 27 chr13 78612923 78612997 -23260172 - Tigger5 DNA MER2_type 0 2323 2251 264 214 0 18 chr13 78612965 78613021 -23260148 - Tigger5 DNA MER2_type -2268 55 1 * 261 377 23 15 chr13 78613574 78613704 -23259465 - MIR SINE MIR -61 147 17 279 168 0 133 chr13 78614136 78614249 -23258920 + MER103 DNA DNA 69 166 0 2292 46 4 4 chr13 78614259 78614567 -23258602 + AluY SINE Alu 1 308 0 481 188 20 0 chr13 78615573 78615674 -23257495 + MER39 LTR ERV1 1 103 -604 807 67 0 0 chr13 78616322 78616426 -23256743 - L1PA5 LINE L1 0 6154 6051 23 33 0 0 chr13 78617161 78617191 -23255978 + AT_rich Low_complexity Low_complexity 1 30 0 270 320 56 21 chr13 78618417 78618651 -23254518 + HAL1 LINE L1 2262 2503 -4 364 326 40 29 chr13 78618668 78618843 -23254326 + HAL1 LINE L1 1070 1246 -1261 23 33 0 0 chr13 78619021 78619051 -23254118 + AT_rich Low_complexity Low_complexity 1 30 0 1719 159 10 3 chr13 78620042 78620338 -23252831 + AluSx SINE Alu 1 298 -14 189 147 0 0 chr13 78620429 78620463 -23252706 + (TAA)n Simple_repeat Simple_repeat 2 35 0 864 308 101 11 chr13 78620523 78620988 -23252181 + LTR33 LTR ERVL 10 516 -5 915 184 0 6 chr13 78621068 78621231 -23251938 - FRAM SINE Alu -14 162 1 905 140 0 0 chr13 78621549 78621685 -23251484 + AluSg/x SINE Alu 162 297 -13 1415 88 15 34 chr13 78622351 78622581 -23250588 - AluSq SINE Alu 0 309 84 1985 125 17 0 chr13 78622583 78622872 -23250297 - AluSx SINE Alu -18 294 1 1176 271 128 11 chr13 78622993 78623439 -23249730 - LTR40a LTR ERVL -5 514 17 23 0 0 0 chr13 78625523 78625546 -23247623 + AT_rich Low_complexity Low_complexity 1 23 0 960 83 0 0 chr13 78626767 78626900 -23246269 - AluY SINE Alu -1 310 178 249 281 12 12 chr13 78628663 78628745 -23244424 - MIR SINE MIR -8 254 173 32 0 0 0 chr13 78628805 78628837 -23244332 + AT_rich Low_complexity Low_complexity 1 32 0 964 56 32 0 chr13 78629075 78629200 -23243969 + L1PA7 LINE L1 6019 6147 -7 23 0 0 0 chr13 78629616 78629639 -23243530 + AT_rich Low_complexity Low_complexity 1 23 0 324 211 127 0 chr13 78630087 78630158 -23243011 + MADE1 DNA Mariner 1 80 0 1305 169 132 25 chr13 78630197 78630522 -23242647 + MER46B DNA MER2_type 2 236 0 306 164 0 0 chr13 78630966 78631021 -23242148 + (TA)n Simple_repeat Simple_repeat 2 56 0 1165 134 35 69 chr13 78631197 78631381 -23241788 - THE1B LTR MaLR -12 352 122 2251 108 0 6 chr13 78631381 78631695 -23241474 - AluSx SINE Alu 0 312 1 1165 134 35 69 chr13 78631695 78631812 -23241357 - THE1B LTR MaLR -242 122 3 233 287 43 11 chr13 78632581 78632675 -23240494 - L1M4 LINE L1 -2322 3824 3728 476 188 11 3 chr13 78633034 78633142 -23240027 - L1MA9 LINE L1 -75 6093 5987 37 86 0 0 chr13 78633445 78633538 -23239631 + AT_rich Low_complexity Low_complexity 1 93 0 1425 208 56 56 chr13 78633780 78634175 -23238994 - MSTD LTR MaLR 0 396 2 296 302 83 10 chr13 78635193 78635289 -23237880 + L2 LINE L2 3165 3267 -5 572 296 98 48 chr13 78635310 78635706 -23237463 + L2 LINE L2 2305 2720 -594 2227 252 105 30 chr13 78635746 78636652 -23236517 + L1MEc LINE L1 302 1275 -5121 23 0 0 0 chr13 78636797 78636820 -23236349 + AT_rich Low_complexity Low_complexity 1 23 0 275 85 21 0 chr13 78638475 78638522 -23234647 + (TC)n Simple_repeat Simple_repeat 1 48 0 2753 252 28 70 chr13 78638595 78638759 -23234410 + L1MC4 LINE L1 6614 6783 -1259 2299 57 0 3 chr13 78638759 78639062 -23234107 - AluY SINE Alu 0 302 1 2753 252 28 70 chr13 78639062 78639995 -23233174 + L1MC4 LINE L1 6783 7666 -376 180 363 25 45 chr13 78640856 78641013 -23232156 + L2 LINE L2 3012 3165 -107 2626 28 0 0 chr13 78641506 78641829 -23231340 - L1P LINE L1 -772 5374 5052 5086 11 0 0 chr13 78641829 78642390 -23230779 + L1PA2 LINE L1 5581 6152 -3 21 36 0 0 chr13 78643187 78643215 -23229954 + AT_rich Low_complexity Low_complexity 1 28 0 3774 230 46 65 chr13 78643507 78643687 -23229482 - L1ME1 LINE L1 -5 6161 5979 1467 105 5 0 chr13 78643687 78643878 -23229291 - AluSq SINE Alu -52 261 70 3774 230 46 65 chr13 78643878 78645433 -23227736 - L1ME1 LINE L1 -187 5979 4294 333 0 0 0 chr13 78645433 78645470 -23227699 + (TG)n Simple_repeat Simple_repeat 2 38 0 3774 230 46 65 chr13 78645470 78645860 -23227309 - L1ME1 LINE L1 -1872 4294 3898 283 220 55 44 chr13 78646333 78646424 -23226745 - L2 LINE L2 -1 3312 3221 21 0 0 0 chr13 78648975 78648996 -23224173 + AT_rich Low_complexity Low_complexity 1 21 0 2156 91 62 0 chr13 78649309 78649617 -23223552 - L1PA8A LINE L1 -13 6118 5792 651 98 0 62 chr13 78649620 78649732 -23223437 + MLT2A1 LTR ERVL 340 444 0 3316 159 17 3 chr13 78649735 78650321 -23222848 + L1MC3 LINE L1 7184 7777 -8 233 268 19 148 chr13 78651267 78651476 -23221693 + L2 LINE L2 2582 2763 -551 219 156 0 22 chr13 78651481 78651526 -23221643 + (TG)n Simple_repeat Simple_repeat 1 44 0 585 337 76 52 chr13 78651538 78651959 -23221210 - LTR16C LTR ERVL -58 433 3 299 323 10 0 chr13 78652011 78652107 -23221062 - LTR33 LTR ERVL 0 521 425 402 305 23 0 chr13 78652240 78652368 -23220801 - LTR33 LTR ERVL -270 251 121 390 286 8 25 chr13 78652459 78652578 -23220591 + L2 LINE L2 3190 3306 -7 1652 259 36 9 chr13 78653279 78653719 -23219450 + MLT1C LTR MaLR 16 467 0 315 0 0 0 chr13 78653800 78653835 -23219334 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2111 116 0 23 chr13 78653837 78654140 -23219029 - AluSx SINE Alu -13 299 4 339 327 39 10 chr13 78654411 78654515 -23218654 - L2 LINE L2 -12 3260 3154 1175 164 23 68 chr13 78655217 78655480 -23217689 + AluJo SINE Alu 44 294 -18 29 70 0 0 chr13 78655704 78655761 -23217408 + AT_rich Low_complexity Low_complexity 1 57 0 231 61 0 0 chr13 78656074 78656107 -23217062 + (T)n Simple_repeat Simple_repeat 1 33 0 290 128 0 0 chr13 78657374 78657421 -23215748 - L1MA9 LINE L1 0 6312 6266 2855 3 0 0 chr13 78657422 78657730 -23215439 - AluYa5 SINE Alu -3 308 1 647 226 50 0 chr13 78657731 78657912 -23215257 - L1 LINE L1 -782 5364 5175 329 249 70 27 chr13 78658627 78658812 -23214357 - L1ME3A LINE L1 -234 5936 5744 347 345 57 0 chr13 78658917 78659094 -23214075 - L1MC4 LINE L1 -1339 6703 6517 573 238 0 30 chr13 78659266 78659430 -23213739 + MER3 DNA MER1_type 9 167 -42 1631 174 25 0 chr13 78659531 78659813 -23213356 + AluJb SINE Alu 11 299 -13 529 290 177 33 chr13 78659938 78660328 -23212841 - L1ME4a LINE L1 -157 5964 5519 568 319 44 44 chr13 78661130 78661479 -23211690 + LTR16A1 LTR ERVL 120 483 -8 896 103 0 0 chr13 78661963 78662079 -23211090 + AluSg SINE Alu 5 120 -190 620 80 4 62 chr13 78662079 78662312 -23210857 + (TA)n Simple_repeat Simple_repeat 1 219 0 339 253 0 22 chr13 78662318 78662409 -23210760 - L1MC4 LINE L1 -1339 6703 6615 1278 102 0 0 chr13 78662418 78662585 -23210584 + AluSg SINE Alu 125 291 -19 418 312 139 10 chr13 78663091 78663484 -23209685 + L1ME4a LINE L1 5382 5828 -293 258 254 0 34 chr13 78663897 78663956 -23209213 - MIR SINE MIR -133 75 19 322 374 58 55 chr13 78668220 78668637 -23204532 + L2 LINE L2 2855 3272 0 5277 102 1 1 chr13 78670799 78671557 -23201612 + L1PA13 LINE L1 5405 6162 -1 1835 116 72 14 chr13 78671773 78672066 -23201103 - AluSg SINE Alu 0 310 1 186 43 0 0 chr13 78672114 78672137 -23201032 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr13 78672464 78672494 -23200675 + AT_rich Low_complexity Low_complexity 1 30 0 1013 298 129 52 chr13 78676626 78677688 -23195481 - L2 LINE L2 0 3313 2183 274 315 0 9 chr13 78678321 78678429 -23194740 + CT-rich Low_complexity Low_complexity 1 107 0 216 318 0 0 chr13 78679408 78679471 -23193698 + L2 LINE L2 2271 2333 -981 189 74 0 0 chr13 78680593 78680620 -23192549 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 27 81 0 0 chr13 78682173 78682235 -23190934 + AT_rich Low_complexity Low_complexity 1 62 0 4415 188 19 39 chr13 78682340 78682859 -23190310 - L1MC2 LINE L1 -21 6323 5830 2274 121 0 0 chr13 78682859 78683166 -23190003 - AluSg SINE Alu -3 307 1 4415 188 19 39 chr13 78683166 78683626 -23189543 - L1MC2 LINE L1 -514 5830 5363 1851 147 0 14 chr13 78683685 78683992 -23189177 - AluSx SINE Alu 0 303 1 43059 31 21 1 chr13 78684159 78690190 -23182979 - L1HS LINE L1 0 6155 1 22 35 0 0 chr13 78690252 78690281 -23182888 + AT_rich Low_complexity Low_complexity 1 29 0 3830 148 5 0 chr13 78690469 78691089 -23182080 - L1PA16 LINE L1 -5 6161 5539 1715 20 0 10 chr13 78691090 78691293 -23181876 + L1PA3 LINE L1 5955 6155 0 612 169 19 94 chr13 78691302 78691462 -23181707 - L1PA16 LINE L1 -627 5539 5392 1657 164 66 38 chr13 78691463 78691828 -23181341 + THE1C LTR MaLR 1 375 0 8341 153 26 38 chr13 78691830 78693427 -23179742 + THE1C-int LTR MaLR 3 1580 0 1278 170 102 40 chr13 78693427 78693780 -23179389 + THE1C LTR MaLR 1 375 0 795 114 50 0 chr13 78693780 78693939 -23179230 - L1 LINE L1 -751 5395 5223 7825 88 6 2 chr13 78694300 78696183 -23176986 - L1PA7 LINE L1 0 6154 4258 2010 58 0 4 chr13 78696283 78696542 -23176627 - L1P2 LINE L1 -483 5672 5415 * 11053 100 9 11 chr13 78696530 78698204 -23174965 - L1PA7 LINE L1 -2450 3696 2027 232 239 37 45 chr13 78698196 78698330 -23174839 - L1M4 LINE L1 -2188 3958 3826 * 32 0 0 0 chr13 78698812 78698844 -23174325 + AT_rich Low_complexity Low_complexity 1 32 0 236 242 0 30 chr13 78699406 78699472 -23173697 + HAL1 LINE L1 149 212 -2295 183 211 0 92 chr13 78699573 78699649 -23173520 - MIR3 SINE MIR -17 191 123 1875 275 112 29 chr13 78699714 78700597 -23172572 + L2 LINE L2 2015 2970 -344 398 293 143 0 chr13 78701056 78701196 -23171973 + L2 LINE L2 3127 3286 -27 373 281 24 54 chr13 78701226 78701393 -23171776 + HAL1 LINE L1 2193 2354 -153 70 75 0 0 chr13 78701527 78701674 -23171495 + AT_rich Low_complexity Low_complexity 1 147 0 182 277 77 15 chr13 78701808 78701873 -23171296 - L3b LINE CR1 -71 1512 1444 373 243 0 13 chr13 78702745 78702897 -23170272 + (TA)n Simple_repeat Simple_repeat 1 150 0 1043 201 55 17 chr13 78703358 78703647 -23169522 + MER33 DNA MER1_type 3 302 -22 1320 213 7 18 chr13 78703767 78704049 -23169120 + AluJo SINE Alu 1 279 -33 27 29 0 0 chr13 78704081 78704115 -23169054 + AT_rich Low_complexity Low_complexity 1 34 0 1061 258 34 34 chr13 78704766 78705092 -23168077 + MLT1A2 LTR MaLR 1 326 -48 386 229 0 0 chr13 78705091 78705174 -23167995 + MLT1A2 LTR MaLR 285 367 -7 * 1141 136 11 0 chr13 78706834 78707011 -23166158 - AluSg/x SINE Alu 0 312 134 1875 125 23 39 chr13 78707011 78707316 -23165853 - AluSq SINE Alu -13 300 1 371 305 35 25 chr13 78707540 78707737 -23165432 - MLT1H LTR MaLR -301 248 50 341 342 16 57 chr13 78708563 78708756 -23164413 - MER5A DNA MER1_type -4 185 1 346 133 0 40 chr13 78709184 78709259 -23163910 + L1MC/D LINE L1 5411 5482 -877 594 214 56 21 chr13 78709309 78709497 -23163672 + L1MC/D LINE L1 5446 5631 -535 2172 116 0 0 chr13 78710327 78710621 -23162548 + AluSg1 SINE Alu 1 294 -15 440 333 11 33 chr13 78712154 78712337 -23160832 - MIR SINE MIR -61 201 23 4272 137 34 15 chr13 78713088 78713931 -23159238 + L1MA3 LINE L1 5203 6109 -196 1361 117 4 85 chr13 78713931 78714179 -23158990 + AluSg/x SINE Alu 74 301 -11 886 113 56 0 chr13 78714187 78714347 -23158822 + L1MA3 LINE L1 6135 6303 -2 246 267 13 40 chr13 78717630 78717705 -23155464 - Charlie4 DNA MER1_type -1 1960 1888 256 305 156 35 chr13 78718282 78718423 -23154746 + MIR SINE MIR 28 185 -77 287 113 132 0 chr13 78719670 78719723 -23153446 - L1M3 LINE L1 -564 5607 5548 * 2322 156 19 12 chr13 78719720 78720136 -23153033 + L1MB1 LINE L1 5736 6154 -35 366 23 0 0 chr13 78720136 78720179 -23152990 + (CA)n Simple_repeat Simple_repeat 2 44 0 833 233 6 0 chr13 78721650 78721822 -23151347 - FRAM SINE Alu -3 173 1 294 354 13 57 chr13 78724071 78724229 -23148940 - MIR3 SINE MIR -25 183 33 188 303 42 59 chr13 78724366 78724485 -23148684 + L2 LINE L2 2946 3062 -251 991 197 144 14 chr13 78724569 78724853 -23148316 + MER33 DNA MER1_type 4 324 0 422 146 81 89 chr13 78725459 78725582 -23147587 - L1MC2 LINE L1 -11 6333 6212 273 167 61 15 chr13 78725585 78725651 -23147518 + MSTC LTR MaLR 336 404 -24 672 219 17 104 chr13 78725651 78725948 -23147221 - L1M4 LINE L1 -1003 5143 4873 301 333 95 56 chr13 78726547 78726958 -23146211 + HAL1 LINE L1 1054 1480 -1027 311 318 68 8 chr13 78729498 78729630 -23143539 + MIR3 SINE MIR 62 201 -7 274 339 40 16 chr13 78730778 78730902 -23142267 + MIR SINE MIR 21 147 -115 367 358 80 15 chr13 78731045 78731246 -23141923 + MIR SINE MIR 32 245 -17 183 306 36 104 chr13 78731364 78731586 -23141583 + L2 LINE L2 2392 2598 -716 232 306 38 125 chr13 78731832 78732257 -23140912 + L2 LINE L2 2926 3313 0 187 357 139 23 chr13 78732504 78732633 -23140536 + L2 LINE L2 3129 3272 0 2198 119 10 0 chr13 78733137 78733447 -23139722 - AluSp SINE Alu 0 313 1 241 229 181 42 chr13 78734173 78734317 -23138852 - MER103 DNA DNA -2 164 1 510 295 195 4 chr13 78734843 78735104 -23138065 + L2 LINE L2 1399 1709 -1605 217 205 0 0 chr13 78735105 78735144 -23138025 + GA-rich Low_complexity Low_complexity 2 40 0 284 286 79 128 chr13 78735155 78735382 -23137787 + L2 LINE L2 1701 1916 -1398 824 329 44 48 chr13 78735400 78735901 -23137268 + L2 LINE L2 2814 3312 -1 301 208 26 0 chr13 78736238 78736315 -23136854 + L1MCa LINE L1 1985 2063 -4363 237 132 0 0 chr13 78736317 78736355 -23136814 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1541 167 26 123 chr13 78736460 78736890 -23136279 + MSTC LTR MaLR 1 388 -40 12839 37 3 2 chr13 78736970 78739303 -23133866 - L1PA5 LINE L1 0 6154 3818 325 316 87 64 chr13 78739317 78739674 -23133495 - L2 LINE L2 -570 2744 2380 23 0 0 0 chr13 78741126 78741149 -23132020 + AT_rich Low_complexity Low_complexity 1 23 0 1792 185 48 0 chr13 78741697 78742027 -23131142 - MER7A DNA MER2_type 0 346 3 260 73 73 0 chr13 78742116 78742157 -23131012 - MIR SINE MIR -98 164 121 348 0 23 0 chr13 78743188 78743231 -23129938 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2025 70 48 11 chr13 78743231 78743502 -23129667 - AluSg1 SINE Alu -1 323 1 288 0 0 0 chr13 78746637 78746669 -23126500 + (A)n Simple_repeat Simple_repeat 1 32 0 1540 42 0 0 chr13 78746902 78747093 -23126076 + L1PA5 LINE L1 5964 6154 0 674 198 6 43 chr13 78747518 78747680 -23125489 - MER20 DNA MER1_type -63 156 1 42376 36 24 1 chr13 78747809 78753822 -23119347 + L1PA3 LINE L1 1 6155 0 8418 211 62 23 chr13 78754095 78756452 -23116717 - L1 LINE L1 -1025 5823 3376 1157 214 13 49 chr13 78756470 78756501 -23116668 - L1 LINE L1 -3617 3231 3200 836 226 6 6 chr13 78756501 78756665 -23116504 - FAM SINE Alu -11 164 1 1157 214 13 49 chr13 78756665 78757172 -23115997 - L1 LINE L1 -3648 3200 2725 1022 250 98 23 chr13 78757169 78757779 -23115390 + L1M1 LINE L1 2780 3441 -4124 * 4707 259 50 51 chr13 78757780 78760166 -23113003 - L1 LINE L1 -4457 2392 61 199 333 67 9 chr13 78760790 78760895 -23112274 + MIR SINE MIR 20 130 -132 692 273 11 0 chr13 78760917 78761104 -23112065 + MER5A DNA MER1_type 1 189 0 1444 184 102 12 chr13 78761109 78761451 -23111718 - MER58D DNA MER1_type -4 382 10 182 36 0 36 chr13 78761612 78761640 -23111529 + (CCCA)n Simple_repeat Simple_repeat 4 30 0 2189 102 14 0 chr13 78762527 78762822 -23110347 + AluSx SINE Alu 5 303 -9 343 279 180 17 chr13 78763093 78763265 -23109904 - L1ME3 LINE L1 -50 6112 5913 593 141 0 147 chr13 78764780 78764936 -23108233 + FLAM_C SINE Alu 1 133 -10 1795 178 0 3 chr13 78765465 78765769 -23107400 + AluJb SINE Alu 1 303 -9 2229 234 177 21 chr13 78765842 78766595 -23106574 - L1MDa LINE L1 -5244 1296 427 2054 116 0 10 chr13 78766684 78766976 -23106193 - AluSg1 SINE Alu -20 289 1 1385 308 99 23 chr13 78767015 78768121 -23105048 + L2 LINE L2 2108 3309 -4 27 0 0 0 chr13 78768227 78768254 -23104915 + AT_rich Low_complexity Low_complexity 1 27 0 2354 104 58 6 chr13 78769125 78769471 -23103698 - THE1B LTR MaLR 0 364 1 189 330 104 0 chr13 78771221 78771327 -23101842 - L2 LINE L2 -1 3312 3196 1345 235 100 32 chr13 78771329 78771885 -23101284 - MLT1D LTR MaLR 0 505 14 1049 111 7 0 chr13 78772230 78772383 -23100786 + AluJb SINE Alu 156 309 -3 2127 118 0 20 chr13 78772383 78772687 -23100482 + AluSg SINE Alu 1 298 -12 2015 99 50 0 chr13 78772687 78772969 -23100200 + AluSc SINE Alu 1 297 -12 25 31 0 0 chr13 78773548 78773580 -23099589 + AT_rich Low_complexity Low_complexity 1 32 0 237 211 0 0 chr13 78774299 78774351 -23098818 + (CA)n Simple_repeat Simple_repeat 2 53 0 2196 127 67 14 chr13 78774359 78774705 -23098464 - THE1B LTR MaLR 0 364 1 575 228 0 8 chr13 78774862 78774989 -23098180 - FLAM_C SINE Alu -17 126 1 378 182 0 33 chr13 78775588 78775769 -23097400 + (TTTAA)n Simple_repeat Simple_repeat 4 178 0 353 165 38 23 chr13 78777365 78777498 -23095671 + GA-rich Low_complexity Low_complexity 2 136 0 244 379 0 21 chr13 78777797 78777937 -23095232 - L2 LINE L2 -264 3049 2913 2146 126 3 0 chr13 78780327 78780636 -23092533 + AluSx SINE Alu 1 310 -2 709 268 30 53 chr13 78781034 78781299 -23091870 + MIR SINE MIR 4 262 0 30 0 0 0 chr13 78781993 78782023 -23091146 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr13 78782755 78782784 -23090385 + AT_rich Low_complexity Low_complexity 1 29 0 1473 150 6 139 chr13 78782887 78783226 -23089943 + AluJo SINE Alu 6 299 -13 344 319 154 18 chr13 78783572 78783851 -23089318 + L1M4 LINE L1 2568 2884 -3262 385 322 56 0 chr13 78784081 78784224 -23088945 - LTR16B LTR ERVL -88 376 226 407 353 12 37 chr13 78784308 78784552 -23088617 - LTR16B LTR ERVL -176 288 51 482 248 148 34 chr13 78784853 78785002 -23088167 - MIR SINE MIR -34 228 63 1968 165 51 32 chr13 78785068 78785602 -23087567 - MLT2A2 LTR ERVL -8 546 1 209 163 20 0 chr13 78785983 78786032 -23087137 + GA-rich Low_complexity Low_complexity 2 51 0 22 35 0 0 chr13 78786218 78786247 -23086922 + AT_rich Low_complexity Low_complexity 1 29 0 763 270 25 17 chr13 78786793 78787034 -23086135 + MER97b DNA MER1_type? 12 254 -799 552 96 0 0 chr13 78787057 78787140 -23086029 - L1MB8 LINE L1 0 6178 6096 344 122 22 56 chr13 78787154 78787244 -23085925 - L1MB3 LINE L1 0 6183 6097 26959 75 17 0 chr13 78787399 78791845 -23081324 + L1PA6 LINE L1 1646 6148 -6 22 35 0 0 chr13 78792087 78792116 -23081053 + AT_rich Low_complexity Low_complexity 1 29 0 272 243 43 0 chr13 78792712 78792782 -23080387 + MIR3 SINE MIR 125 197 -11 186 416 10 0 chr13 78792898 78792999 -23080170 + MIR SINE MIR 64 165 -97 691 67 45 45 chr13 78793096 78793274 -23079895 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 25 31 0 0 chr13 78794630 78794662 -23078507 + AT_rich Low_complexity Low_complexity 1 32 0 236 29 0 29 chr13 78796440 78796474 -23076695 + (TG)n Simple_repeat Simple_repeat 2 34 0 234 213 0 16 chr13 78796523 78796584 -23076585 + (TA)n Simple_repeat Simple_repeat 1 60 0 6109 140 89 18 chr13 78796584 78797714 -23075455 + Tigger3b DNA MER2_type 20 1230 -1 366 114 57 68 chr13 78797760 78797848 -23075321 - L1PA6 LINE L1 -10 6144 6058 1576 70 62 62 chr13 78797848 78798120 -23075049 + L1PA4 LINE L1 5711 5982 -173 192 325 156 26 chr13 78798745 78799047 -23074122 - L3b LINE CR1 -114 1469 1129 13400 148 27 21 chr13 78799669 78800778 -23072391 - Tigger1 DNA MER2_type 0 2418 1317 1605 199 0 3 chr13 78800778 78801064 -23072105 - AluJb SINE Alu -23 289 5 13400 148 27 21 chr13 78801064 78802272 -23070897 - Tigger1 DNA MER2_type -1101 1317 87 224 358 58 36 chr13 78802954 78803091 -23070078 + MIR3 SINE MIR 29 168 -40 243 300 129 0 chr13 78803401 78803471 -23069698 - MIR SINE MIR -152 110 32 414 108 0 0 chr13 78803615 78803680 -23069489 - Tigger1 DNA MER2_type -2169 249 185 22 35 0 0 chr13 78804305 78804334 -23068835 + AT_rich Low_complexity Low_complexity 1 29 0 2356 171 119 30 chr13 78804354 78804523 -23068646 - L1MB4 LINE L1 0 6180 6012 3272 237 122 16 chr13 78804523 78804654 -23068515 - L1MD2 LINE L1 -351 6008 5892 2156 123 0 0 chr13 78804654 78804954 -23068215 - AluY SINE Alu -11 300 1 3272 237 122 16 chr13 78804954 78806334 -23066835 - L1MD2 LINE L1 -467 5892 4319 426 241 37 6 chr13 78806329 78806491 -23066678 + L1M4 LINE L1 3844 4010 -2136 * 924 228 31 5 chr13 78806499 78806723 -23066446 + L1M4 LINE L1 4093 4322 -1824 1642 313 77 26 chr13 78806971 78808097 -23065072 - L2 LINE L2 -4 3309 2119 1740 132 24 3 chr13 78809966 78810255 -23062914 - AluSx SINE Alu -9 303 9 22 56 0 0 chr13 78810306 78810342 -23062827 + AT_rich Low_complexity Low_complexity 1 36 0 521 311 101 9 chr13 78811359 78811578 -23061591 - MIR SINE MIR -3 259 21 212 231 192 29 chr13 78812633 78812737 -23060432 + MIR SINE MIR 81 201 -61 448 272 13 57 chr13 78812857 78813015 -23060154 - MIR SINE MIR -10 252 102 296 348 27 8 chr13 78815605 78815867 -23057302 - L1ME3A LINE L1 -225 5945 5680 1811 219 216 9 chr13 78815867 78816405 -23056764 + MLT1E1 LTR MaLR 1 649 -5 1086 164 5 51 chr13 78818614 78818828 -23054341 + L1PB4 LINE L1 5949 6152 -4 23 0 0 0 chr13 78820332 78820355 -23052814 + AT_rich Low_complexity Low_complexity 1 23 0 642 281 101 60 chr13 78821194 78821579 -23051590 - MLT1K LTR MaLR -5 583 183 254 203 58 0 chr13 78821636 78821705 -23051464 - MIR SINE MIR -67 141 69 21 71 0 0 chr13 78822036 78822078 -23051091 + AT_rich Low_complexity Low_complexity 1 42 0 2117 124 7 0 chr13 78822327 78822633 -23050536 + AluSx SINE Alu 1 308 -4 362 385 32 3 chr13 78823462 78823758 -23049411 - L2 LINE L2 -465 2849 2474 238 208 0 0 chr13 78825108 78825161 -23048008 - L1ME LINE L1 -297 5824 5772 21 36 0 0 chr13 78825331 78825359 -23047810 + AT_rich Low_complexity Low_complexity 1 28 0 380 326 61 50 chr13 78825392 78825671 -23047498 - L1ME3A LINE L1 -2262 5546 5265 391 303 13 0 chr13 78825848 78826003 -23047166 - L1ME3A LINE L1 -1088 5058 4902 362 337 90 41 chr13 78826469 78826837 -23046332 + HAL1 LINE L1 1218 1603 -904 2140 80 59 7 chr13 78827408 78827696 -23045473 + AluSp SINE Alu 1 303 -10 2272 77 3 19 chr13 78827800 78828110 -23045059 + AluY SINE Alu 1 305 -6 355 225 54 16 chr13 78828258 78828426 -23044743 + L1MCc LINE L1 1420 1760 -4887 2750 77 16 3 chr13 78828903 78829281 -23043888 - L1PA13 LINE L1 -7 6156 5774 521 175 63 8 chr13 78829282 78829408 -23043761 + L1P LINE L1 3181 3313 -2833 480 35 0 0 chr13 78829665 78829723 -23043446 + (TA)n Simple_repeat Simple_repeat 2 59 0 1505 133 25 0 chr13 78829728 78829968 -23043201 - L1MB2 LINE L1 -258 5913 5668 2771 225 39 20 chr13 78829968 78830720 -23042449 - L1 LINE L1 -1247 4899 4134 1043 272 72 38 chr13 78830973 78831572 -23041597 - L1MC5 LINE L1 -44 7917 7299 1184 264 47 34 chr13 78831787 78832234 -23040935 - LTR40c LTR ERVL -12 453 1 229 239 0 0 chr13 78832587 78832633 -23040536 - L2 LINE L2 -9 3304 3259 180 200 0 0 chr13 78832947 78832992 -23040177 + (AATTG)n Simple_repeat Simple_repeat 5 49 0 368 208 42 31 chr13 78833583 78833679 -23039490 - MIR3 SINE MIR -1 207 111 216 97 0 0 chr13 78834135 78834166 -23039003 + (TG)n Simple_repeat Simple_repeat 2 32 0 1257 249 63 39 chr13 78834930 78835311 -23037858 - MLT2B1 LTR ERVL -130 390 1 26 64 0 0 chr13 78835386 78835433 -23037736 + AT_rich Low_complexity Low_complexity 1 47 0 1890 157 33 25 chr13 78835601 78835964 -23037205 - THE1C LTR MaLR -2 373 8 1778 120 204 8 chr13 78837018 78837376 -23035793 + MSTA LTR MaLR 1 428 0 204 340 0 41 chr13 78837723 78837820 -23035349 + MIR SINE MIR 30 122 -86 280 320 10 0 chr13 78837876 78837973 -23035196 - MIR SINE MIR -56 206 109 1240 283 66 82 chr13 78839722 78839997 -23033172 + HAL1 LINE L1 10 288 -2219 1971 148 3 0 chr13 78839997 78840295 -23032874 + AluSx SINE Alu 1 299 -13 1240 283 66 82 chr13 78840295 78840561 -23032608 + HAL1 LINE L1 288 540 -1967 2293 126 81 27 chr13 78840561 78840967 -23032202 - MSTA LTR MaLR 0 428 1 1240 283 66 82 chr13 78840967 78841117 -23032052 + HAL1 LINE L1 540 691 -1816 364 257 42 62 chr13 78841156 78841201 -23031968 + MLT1I LTR MaLR 28 72 -337 3012 169 49 39 chr13 78841201 78841279 -23031890 + MER73 LTR ERVL 1 77 -567 2191 93 3 26 chr13 78841279 78841591 -23031578 + AluY SINE Alu 1 305 -6 3012 169 49 39 chr13 78841591 78842150 -23031019 + MER73 LTR ERVL 77 644 0 364 257 42 62 chr13 78842150 78842248 -23030921 + MLT1I LTR MaLR 72 168 -241 893 218 0 0 chr13 78842248 78842413 -23030756 - FRAM SINE Alu 0 166 2 1017 259 170 37 chr13 78842623 78842867 -23030302 + HAL1 LINE L1 715 925 -1582 1625 186 34 6 chr13 78842867 78843195 -23029974 + MER44D DNA MER2_type 3 609 0 1017 259 170 37 chr13 78843195 78843572 -23029597 + HAL1 LINE L1 925 1419 -1088 257 200 0 0 chr13 78843597 78843652 -23029517 - L1M4 LINE L1 -1605 4541 4487 344 197 39 8 chr13 78843876 78844003 -23029166 + (TA)n Simple_repeat Simple_repeat 2 132 0 24 77 0 0 chr13 78844031 78844083 -23029086 + AT_rich Low_complexity Low_complexity 1 52 0 856 221 64 34 chr13 78844415 78844713 -23028456 - L1 LINE L1 -840 5306 5000 8709 198 23 5 chr13 78845297 78847792 -23025377 + L1PA16 LINE L1 3254 5812 -354 2454 95 43 0 chr13 78847792 78848141 -23025028 + THE1B LTR MaLR 1 364 0 8709 198 23 5 chr13 78848141 78848494 -23024675 + L1PA16 LINE L1 5812 6157 -9 1582 181 0 30 chr13 78848644 78848942 -23024227 + AluJo SINE Alu 12 300 -12 27 0 0 0 chr13 78849114 78849141 -23024028 + AT_rich Low_complexity Low_complexity 1 27 0 192 258 202 11 chr13 78850588 78850677 -23022492 - L2 LINE L2 -4 3309 3204 21 0 0 0 chr13 78850741 78850762 -23022407 + AT_rich Low_complexity Low_complexity 1 21 0 530 293 52 13 chr13 78850830 78851059 -23022110 - L1ME LINE L1 -331 5790 5553 318 294 61 30 chr13 78851195 78851426 -23021743 - L1ME LINE L1 -798 5348 5111 233 183 67 219 chr13 78851742 78851966 -23021203 + MIR SINE MIR 9 198 -64 201 108 0 0 chr13 78852203 78852240 -23020929 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 483 18 0 0 chr13 78852289 78852345 -23020824 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 253 296 28 0 chr13 78852384 78852455 -23020714 + L2 LINE L2 3198 3270 -2 793 249 115 14 chr13 78852891 78853108 -23020061 + MIR SINE MIR 14 252 -10 2189 98 3 0 chr13 78853181 78853467 -23019702 - AluSp SINE Alu -26 287 1 21 0 0 0 chr13 78854237 78854258 -23018911 + AT_rich Low_complexity Low_complexity 1 21 0 1727 159 40 14 chr13 78855097 78855467 -23017702 + L1MA7 LINE L1 5912 6291 0 21 36 0 0 chr13 78855533 78855561 -23017608 + AT_rich Low_complexity Low_complexity 1 28 0 254 299 111 14 chr13 78857983 78858127 -23015042 - MARNA DNA Mariner -62 524 367 236 325 41 8 chr13 78858279 78858402 -23014767 - MARNA DNA Mariner -357 229 103 373 316 126 0 chr13 78858590 78858764 -23014405 - MIR SINE MIR -6 256 61 468 150 0 0 chr13 78859191 78859271 -23013898 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 264 279 115 10 chr13 78860711 78860815 -23012354 + MIR SINE MIR 124 238 -24 1871 151 143 11 chr13 78860947 78861324 -23011845 - MSTA LTR MaLR 0 428 2 198 329 89 0 chr13 78861778 78861857 -23011312 - MIR SINE MIR -149 113 28 456 304 14 14 chr13 78862182 78862320 -23010849 + MIR3 SINE MIR 65 202 -6 250 276 13 26 chr13 78863910 78863986 -23009183 + MIR SINE MIR 41 115 -147 386 320 72 31 chr13 78864815 78865009 -23008160 + MIR SINE MIR 20 221 -41 260 286 15 23 chr13 78865103 78865220 -23007949 - MIR SINE MIR -67 141 76 6258 88 12 8 chr13 78865427 78866316 -23006853 + L1PA10 LINE L1 5271 6163 -5 28 61 0 0 chr13 78867315 78867364 -23005805 + AT_rich Low_complexity Low_complexity 1 49 0 2004 100 42 7 chr13 78867429 78867718 -23005451 - AluSp SINE Alu -14 299 1 1516 81 0 89 chr13 78868627 78868862 -23004307 - AluY SINE Alu -97 214 1 1100 174 85 23 chr13 78869060 78869365 -23003804 - MER33 DNA MER1_type 0 324 1 1600 57 33 0 chr13 78869410 78869622 -23003547 - L1PA5 LINE L1 0 6154 5936 775 42 0 0 chr13 78869622 78869717 -23003452 + L1PA5 LINE L1 5848 5942 -212 450 299 94 42 chr13 78869886 78870174 -23002995 + L1M4 LINE L1 11 313 -6546 2695 213 148 53 chr13 78870394 78871519 -23001650 + L1M4 LINE L1 4783 6014 -943 239 250 0 47 chr13 78872650 78872714 -23000455 + MER5A DNA MER1_type 69 129 -60 212 226 38 0 chr13 78873838 78873891 -22999278 + GA-rich Low_complexity Low_complexity 3 57 0 403 252 163 79 chr13 78875226 78875655 -22997514 + MLT1J LTR MaLR 1 465 -46 1977 147 6 40 chr13 78876115 78876461 -22996708 + MER1B DNA MER1_type 4 337 0 415 349 17 17 chr13 78876635 78876807 -22996362 - MIR SINE MIR -43 219 48 25 51 0 0 chr13 78877942 78877981 -22995188 + AT_rich Low_complexity Low_complexity 1 39 0 272 216 258 21 chr13 78878140 78878237 -22994932 - MIR SINE MIR -10 252 133 436 213 11 0 chr13 78878728 78878822 -22994347 - MER5A DNA MER1_type -85 104 10 3956 49 2 0 chr13 78881051 78881564 -22991605 - L1P LINE L1 -2415 3731 3218 6248 27 7 12 chr13 78881564 78882333 -22990836 + L1PA4 LINE L1 5390 6155 0 261 143 18 0 chr13 78883944 78884000 -22989169 - L1MC4 LINE L1 -1 8041 7985 1081 249 81 21 chr13 78884011 78884444 -22988725 - L1MC4 LINE L1 -152 7890 7432 234 0 0 0 chr13 78885621 78885647 -22987522 + (TA)n Simple_repeat Simple_repeat 2 27 0 1684 129 23 56 chr13 78886168 78886470 -22986699 - AluSx SINE Alu -16 296 5 1796 179 150 5 chr13 78886592 78886966 -22986203 - MSTC LTR MaLR 0 428 1 201 254 0 0 chr13 78887148 78887207 -22985962 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 279 29 0 chr13 78888110 78888178 -22984991 + MIR SINE MIR 46 115 -147 1601 175 0 33 chr13 78888178 78888481 -22984688 + AluJo SINE Alu 1 293 -19 5633 173 35 11 chr13 78888483 78890482 -22982687 + L1PA16 LINE L1 4125 6157 -9 31 26 0 0 chr13 78890482 78890520 -22982649 + AT_rich Low_complexity Low_complexity 1 38 0 259 215 329 0 chr13 78890520 78890599 -22982570 + MIR SINE MIR 112 216 -46 287 353 7 29 chr13 78892542 78892678 -22980491 - MER91A DNA MER1_type -43 153 21 23 68 0 0 chr13 78893771 78893815 -22979354 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr13 78893886 78893915 -22979254 + AT_rich Low_complexity Low_complexity 1 29 0 3459 208 56 35 chr13 78895347 78897384 -22975785 + L1MCa LINE L1 1 1960 -4466 1472 134 5 5 chr13 78897384 78897600 -22975569 - AluSg/x SINE Alu -15 295 80 3459 208 56 35 chr13 78897600 78897683 -22975486 + L1MCa LINE L1 1960 2040 -4386 1347 276 101 36 chr13 78898026 78898866 -22974303 + L1MC4a LINE L1 5372 6266 -1542 238 208 28 28 chr13 78899008 78899080 -22974089 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 258 320 20 40 chr13 78899625 78899725 -22973444 + MIR3 SINE MIR 84 181 -27 204 250 241 9 chr13 78901521 78901637 -22971532 + MIR SINE MIR 65 207 -55 29 78 0 0 chr13 78902138 78902202 -22970967 + AT_rich Low_complexity Low_complexity 1 64 0 185 293 53 40 chr13 78902364 78902439 -22970730 - MIR3 SINE MIR -48 160 85 41 36 0 0 chr13 78903907 78903962 -22969207 + AT_rich Low_complexity Low_complexity 1 55 0 195 42 0 0 chr13 78904735 78904759 -22968410 + (T)n Simple_repeat Simple_repeat 1 24 0 250 250 19 0 chr13 78905316 78905368 -22967801 + MIR3 SINE MIR 141 193 -15 254 285 159 13 chr13 78905514 78905665 -22967504 - MIR SINE MIR -44 218 46 1657 271 149 39 chr13 78906908 78907222 -22965947 + HAL1 LINE L1 74 352 -2155 2345 81 3 0 chr13 78907222 78907529 -22965640 + AluY SINE Alu 1 308 -3 1657 271 149 39 chr13 78907529 78908121 -22965048 + HAL1 LINE L1 352 1080 -1427 1643 262 122 55 chr13 78908239 78909255 -22963914 + HAL1 LINE L1 1266 2349 -158 2143 123 0 0 chr13 78909271 78909573 -22963596 - AluSx SINE Alu -10 302 1 751 227 55 31 chr13 78910225 78910481 -22962688 + MIR SINE MIR 1 262 0 208 353 68 8 chr13 78911029 78911162 -22962007 + L2 LINE L2 2617 2757 -557 2388 196 48 20 chr13 78911824 78912007 -22961162 - L1MA9 LINE L1 -172 6140 5964 2338 90 0 3 chr13 78912007 78912318 -22960851 - AluY SINE Alu -1 310 1 2388 196 48 20 chr13 78912318 78912674 -22960495 - L1MA9 LINE L1 -348 5964 5586 883 223 33 73 chr13 78912703 78912976 -22960193 - MLT1D LTR MaLR -243 262 1 195 322 35 46 chr13 78913471 78913558 -22959611 - L2 LINE L2 -43 3229 3144 213 217 0 0 chr13 78913853 78913899 -22959270 + A-rich Low_complexity Low_complexity 3 48 0 5723 110 24 14 chr13 78914647 78915628 -22957541 - L1PA10 LINE L1 -2 6166 5194 1889 308 94 32 chr13 78915630 78917116 -22956053 + L1ME1 LINE L1 254 1832 -4564 249 65 0 0 chr13 78917130 78917161 -22956008 + THE1A LTR MaLR 325 355 0 272 247 0 0 chr13 78917357 78917430 -22955739 + L1ME1 LINE L1 2520 2592 -3623 2609 217 35 177 chr13 78917449 78917693 -22955476 + L1ME1 LINE L1 2869 3146 -3069 1597 167 31 3 chr13 78917693 78917981 -22955188 + AluJb SINE Alu 1 296 -16 2609 217 35 177 chr13 78917981 78918523 -22954646 + L1ME1 LINE L1 3146 3763 -2452 6724 56 2 1 chr13 78918523 78919375 -22953794 + L1PA7 LINE L1 5298 6150 -4 1025 161 11 0 chr13 78919375 78919544 -22953625 + L1PB1 LINE L1 5959 6134 -17 2609 217 35 177 chr13 78919544 78920640 -22952529 + L1ME1 LINE L1 3761 4485 -1730 1311 243 46 19 chr13 78920641 78921078 -22952091 + L1ME1 LINE L1 5286 5734 -501 394 176 27 38 chr13 78921139 78921472 -22951697 + (TA)n Simple_repeat Simple_repeat 1 329 0 553 176 48 8 chr13 78921491 78921616 -22951553 + L1ME1 LINE L1 5848 5977 -258 471 255 120 38 chr13 78921625 78921809 -22951360 + L1ME1 LINE L1 6031 6229 -6 184 372 35 0 chr13 78924093 78924179 -22948990 + L2 LINE L2 2992 3080 -192 185 289 0 0 chr13 78924524 78924576 -22948593 + MIR3 SINE MIR 154 205 -3 545 321 69 5 chr13 78924897 78925115 -22948054 + MIR SINE MIR 31 262 0 357 269 29 0 chr13 78926624 78926728 -22946441 - L1MC5 LINE L1 -531 7430 7324 21 0 0 0 chr13 78927255 78927276 -22945893 + AT_rich Low_complexity Low_complexity 1 21 0 1800 171 7 3 chr13 78927702 78927994 -22945175 + AluSx SINE Alu 1 293 -19 26 50 0 0 chr13 78928191 78928231 -22944938 + AT_rich Low_complexity Low_complexity 1 40 0 291 167 42 56 chr13 78929259 78929331 -22943838 + MIR SINE MIR 63 133 -129 2032 153 14 19 chr13 78929434 78929800 -22943369 - THE1B LTR MaLR 0 364 1 236 289 11 0 chr13 78929800 78929890 -22943279 - L1M4 LINE L1 -1556 4590 4500 200 296 0 0 chr13 78930033 78930077 -22943092 - L2 LINE L2 -42 3271 3228 1145 288 80 24 chr13 78930265 78930838 -22942331 - L1MC4a LINE L1 -1950 5858 5254 975 284 106 61 chr13 78931221 78931669 -22941500 - L1MC4a LINE L1 -1299 4847 4421 1563 226 60 50 chr13 78931669 78932169 -22941000 + MLT1D LTR MaLR 1 505 0 975 284 106 61 chr13 78932169 78932830 -22940339 - L1MC4a LINE L1 -1725 4421 3688 1789 117 0 29 chr13 78932884 78933158 -22940011 - AluSx SINE Alu -13 299 34 434 339 94 11 chr13 78933351 78933702 -22939467 - L1MC4a LINE L1 -2796 3350 2971 22 56 0 0 chr13 78933795 78933831 -22939338 + AT_rich Low_complexity Low_complexity 1 36 0 37 0 0 0 chr13 78934329 78934366 -22938803 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr13 78934434 78934454 -22938715 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2043 104 0 24 chr13 78934461 78934749 -22938420 - AluSx SINE Alu -31 281 1 1981 150 0 0 chr13 78934834 78935128 -22938041 + AluSx SINE Alu 1 294 -18 336 312 79 21 chr13 78935726 78935915 -22937254 + MLT1J LTR MaLR 71 270 -241 1796 122 10 34 chr13 78936143 78936438 -22936731 + AluJb SINE Alu 1 288 -24 2221 63 0 11 chr13 78936972 78937287 -22935882 - AluY SINE Alu 0 312 1 346 314 8 8 chr13 78937352 78937473 -22935696 + GA-rich Low_complexity Low_complexity 2 122 0 29 70 0 0 chr13 78937533 78937590 -22935579 + AT_rich Low_complexity Low_complexity 1 57 0 292 334 88 25 chr13 78937630 78937983 -22935186 - HAL1b LINE L1 -807 541 167 27 29 0 0 chr13 78938045 78938079 -22935090 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr13 78938281 78938303 -22934866 + AT_rich Low_complexity Low_complexity 1 22 0 47 67 0 0 chr13 78938995 78939084 -22934085 + AT_rich Low_complexity Low_complexity 1 89 0 492 198 28 0 chr13 78939092 78939198 -22933971 - FRAM SINE Alu -30 146 38 3298 235 71 61 chr13 78939333 78940288 -22932881 - L1M4 LINE L1 -5423 1119 150 1637 154 72 39 chr13 78940288 78940651 -22932518 + THE1C LTR MaLR 1 375 0 3298 235 71 61 chr13 78940651 78940767 -22932402 - L1M4 LINE L1 -6392 150 37 22 35 0 0 chr13 78940800 78940829 -22932340 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr13 78942731 78942770 -22930399 + AT_rich Low_complexity Low_complexity 1 39 0 41 66 0 0 chr13 78942870 78942946 -22930223 + AT_rich Low_complexity Low_complexity 1 76 0 242 200 95 67 chr13 78943410 78943515 -22929654 + MIR SINE MIR 14 121 -141 724 208 0 0 chr13 78943633 78943763 -22929406 + FLAM_C SINE Alu 1 130 -3 21 0 0 0 chr13 78943873 78943894 -22929275 + AT_rich Low_complexity Low_complexity 1 21 0 860 211 37 11 chr13 78943983 78944173 -22928996 - AluJo SINE Alu -19 293 99 233 139 0 23 chr13 78944174 78944217 -22928952 - MSTB LTR MaLR 0 426 385 1972 148 0 0 chr13 78944220 78944510 -22928659 + AluSx SINE Alu 5 294 -18 336 312 79 21 chr13 78945108 78945297 -22927872 + MLT1J LTR MaLR 71 270 -241 1769 125 10 34 chr13 78945525 78945820 -22927349 + AluJb SINE Alu 1 288 -24 261 26 0 26 chr13 78946354 78946392 -22926777 + (TTTG)n Simple_repeat Simple_repeat 2 152 0 2253 63 0 11 chr13 78946392 78946677 -22926492 - AluY SINE Alu -29 282 1 346 314 8 8 chr13 78946742 78946863 -22926306 + GA-rich Low_complexity Low_complexity 2 122 0 29 70 0 0 chr13 78946923 78946980 -22926189 + AT_rich Low_complexity Low_complexity 1 57 0 543 337 88 25 chr13 78947020 78947373 -22925796 - HAL1b LINE L1 -807 541 167 27 29 0 0 chr13 78947435 78947469 -22925700 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr13 78947671 78947693 -22925476 + AT_rich Low_complexity Low_complexity 1 22 0 47 67 0 0 chr13 78948383 78948472 -22924697 + AT_rich Low_complexity Low_complexity 1 89 0 1379 206 4 4 chr13 78948488 78948760 -22924409 - AluJo SINE Alu -40 272 1 474 311 104 25 chr13 78948838 78949118 -22924051 - HAL1b LINE L1 -765 583 282 607 244 91 116 chr13 78949161 78949480 -22923689 + MLT1G1 LTR MaLR 2 312 -283 359 263 70 0 chr13 78949634 78949790 -22923379 - L1 LINE L1 -1665 4481 4315 754 239 13 0 chr13 78950277 78950436 -22922733 - FRAM SINE Alu -4 162 2 302 354 104 58 chr13 78952403 78952815 -22920354 - L2 LINE L2 -1 3271 2841 365 363 75 31 chr13 78952845 78953167 -22920002 - L2 LINE L2 -527 2787 2452 2607 110 11 8 chr13 78953860 78954233 -22918936 - THE1C LTR MaLR 0 375 2 207 220 0 0 chr13 78955991 78956041 -22917128 + (TG)n Simple_repeat Simple_repeat 2 51 0 1559 167 0 32 chr13 78956041 78956322 -22916847 - AluJo SINE Alu -32 280 9 22 35 0 0 chr13 78956518 78956547 -22916622 + AT_rich Low_complexity Low_complexity 1 29 0 337 311 61 27 chr13 78956668 78956816 -22916353 + L2 LINE L2 2827 2979 -334 466 302 68 5 chr13 78956958 78957150 -22916019 + MLT1H LTR MaLR 12 215 -334 1929 191 7 7 chr13 78957160 78957578 -22915591 - L1 LINE L1 -1074 5072 4655 639 232 26 7 chr13 78957583 78957734 -22915435 + MER50 LTR ERV1 10 163 -571 2364 184 70 16 chr13 78957779 78958340 -22914829 + MER50 LTR ERV1 144 734 0 2568 173 4 6 chr13 78958340 78958866 -22914303 - L1 LINE L1 -1487 4659 4135 2400 126 22 0 chr13 78959100 78959456 -22913713 - THE1B LTR MaLR 0 364 1 9934 118 38 36 chr13 78959458 78961032 -22912137 - THE1B-int LTR MaLR -2 1578 1 2399 108 40 6 chr13 78961032 78961384 -22911785 - THE1B LTR MaLR 0 364 1 195 129 0 0 chr13 78962026 78962057 -22911112 + (T)n Simple_repeat Simple_repeat 1 31 0 827 266 20 5 chr13 78962185 78962384 -22910785 + MLT1G1 LTR MaLR 5 206 -389 842 198 27 27 chr13 78962464 78962651 -22910518 - MER5A DNA MER1_type -1 188 2 198 296 64 48 chr13 78963966 78964091 -22909078 - L2 LINE L2 0 3313 3187 2310 109 39 20 chr13 78964166 78964523 -22908646 + THE1B LTR MaLR 1 364 0 2359 105 0 0 chr13 78964766 78965072 -22908097 + AluY SINE Alu 1 306 -5 211 331 104 13 chr13 78965937 78966091 -22907078 - MIR3 SINE MIR -31 177 10 254 300 53 47 chr13 78966926 78967076 -22906093 - MLT1J2 LTR MaLR -2 448 298 26 0 0 0 chr13 78967130 78967156 -22906013 + AT_rich Low_complexity Low_complexity 1 26 0 417 164 0 0 chr13 78967185 78967252 -22905917 - FRAM SINE Alu -77 99 33 366 23 0 0 chr13 78967278 78967313 -22905856 + (CA)n Simple_repeat Simple_repeat 1 78 0 366 23 0 0 chr13 78967313 78967356 -22905813 + (CA)n Simple_repeat Simple_repeat 2 44 0 850 137 0 15 chr13 78967366 78967497 -22905672 - FLAM_C SINE Alu -4 129 1 21 0 0 0 chr13 78967861 78967882 -22905287 + AT_rich Low_complexity Low_complexity 1 21 0 561 169 97 0 chr13 78968486 78968610 -22904559 + MLT1J2 LTR MaLR 2 137 -313 381 58 0 0 chr13 78970407 78970459 -22902710 + (TA)n Simple_repeat Simple_repeat 2 53 0 421 286 75 64 chr13 78971665 78972025 -22901144 - MLT1H LTR MaLR -184 365 2 205 330 66 0 chr13 78972025 78972116 -22901053 + MIR3 SINE MIR 107 203 -5 996 292 63 11 chr13 78972601 78973063 -22900106 - L1ME1 LINE L1 -5 6441 5956 289 227 67 27 chr13 78973083 78973112 -22900057 - L1ME1 LINE L1 -692 5752 5726 2367 42 0 0 chr13 78973112 78973401 -22899768 - L1PA4 LINE L1 -6 6149 5861 289 227 67 27 chr13 78973401 78973521 -22899648 - L1ME1 LINE L1 -718 5726 5597 1436 122 80 28 chr13 78973538 78973826 -22899343 + THE1C LTR MaLR 73 375 0 949 272 32 30 chr13 78973826 78974260 -22898909 - L1ME1 LINE L1 -2139 4287 3853 5906 148 101 15 chr13 78974264 78975439 -22897730 - MER52C LTR ERV1 -2 1276 1 189 94 0 0 chr13 78975443 78975475 -22897694 + (TTGG)n Simple_repeat Simple_repeat 2 33 0 641 310 69 9 chr13 78975482 78975933 -22897236 - L1ME1 LINE L1 -2587 3839 3362 821 198 35 41 chr13 78975946 78976143 -22897026 - AluJo SINE Alu -4 308 113 1663 246 44 7 chr13 78976145 78976763 -22896406 - L1ME1 LINE L1 -3090 3336 2696 557 273 20 7 chr13 78976791 78977058 -22896111 - L1ME1 LINE L1 -3819 2623 2378 308 293 16 31 chr13 78977046 78977237 -22895932 - L1ME1 LINE L1 -4757 1669 1482 * 239 337 43 36 chr13 78977339 78977642 -22895527 - L1ME1 LINE L1 -5553 1054 750 554 339 25 14 chr13 78977825 78978105 -22895064 - L1ME1 LINE L1 -6075 532 250 1820 154 17 7 chr13 78978394 78978686 -22894483 + AluSx SINE Alu 5 299 -13 239 299 109 52 chr13 78979235 78979730 -22893439 + HAL1b LINE L1 61 583 -765 270 56 0 0 chr13 78979739 78979775 -22893394 + (CA)n Simple_repeat Simple_repeat 1 36 0 2122 117 0 19 chr13 78979854 78980162 -22893007 + AluSq SINE Alu 1 302 -11 25 51 0 0 chr13 78980270 78980309 -22892860 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr13 78980458 78980488 -22892681 + AT_rich Low_complexity Low_complexity 1 30 0 795 270 86 42 chr13 78980640 78980977 -22892192 + MSTD LTR MaLR 1 352 -44 225 421 8 0 chr13 78981080 78981213 -22891956 - L2 LINE L2 -516 2798 2665 693 220 0 0 chr13 78981217 78981349 -22891820 - MER20 DNA MER1_type 0 219 88 307 376 77 15 chr13 78981467 78981805 -22891364 - L2 LINE L2 -652 2662 2304 22 35 0 0 chr13 78982244 78982273 -22890896 + AT_rich Low_complexity Low_complexity 1 29 0 1746 88 19 31 chr13 78982422 78982682 -22890487 + L1PA10 LINE L1 5900 6156 -12 2025 130 146 11 chr13 78983419 78983796 -22889373 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr13 78983802 78983831 -22889338 + AT_rich Low_complexity Low_complexity 1 29 0 205 224 0 26 chr13 78983926 78984002 -22889167 + GA-rich Low_complexity Low_complexity 1 74 0 224 294 109 33 chr13 78984279 78984371 -22888798 + L2 LINE L2 3164 3262 -10 * 335 313 145 0 chr13 78984343 78984474 -22888695 - L2 LINE L2 0 3313 3164 378 206 0 0 chr13 78984597 78984670 -22888499 + L2 LINE L2 3241 3313 0 207 0 0 0 chr13 78985365 78985388 -22887781 + (T)n Simple_repeat Simple_repeat 1 23 0 856 237 118 0 chr13 78986071 78986299 -22886870 + MSTB LTR MaLR 104 358 -68 2107 154 5 30 chr13 78986401 78986637 -22886532 + THE1B LTR MaLR 1 226 -138 2216 116 3 0 chr13 78986637 78986929 -22886240 + AluSq SINE Alu 1 293 -20 2107 154 5 30 chr13 78986929 78987063 -22886106 + THE1B LTR MaLR 226 362 -2 182 344 108 21 chr13 78987412 78987505 -22885664 + MIR SINE MIR 16 116 -92 182 143 71 0 chr13 78987945 78987987 -22885182 + MIR SINE MIR 99 143 -119 218 331 147 29 chr13 78988046 78988291 -22884878 - L2 LINE L2 -181 3091 2818 3405 57 41 0 chr13 78988823 78989263 -22883906 - L1PA7 LINE L1 -11 6143 5686 776 40 0 0 chr13 78989263 78989362 -22883807 + L1PA7 LINE L1 5576 5674 -480 230 324 113 18 chr13 78990245 78990520 -22882649 + L1MC/D LINE L1 5579 5879 -1929 2825 211 15 39 chr13 78990522 78991191 -22881978 - MER82 DNA MER2_type 0 653 1 23 33 0 0 chr13 78991255 78991285 -22881884 + AT_rich Low_complexity Low_complexity 1 30 0 1870 215 62 29 chr13 78992967 78993455 -22879714 - MLT1D LTR MaLR 0 505 2 251 270 14 0 chr13 78993608 78993682 -22879487 - MER89-int LTR ERV1 -5837 964 890 674 264 41 66 chr13 78994526 78994889 -22878280 - MER110 LTR ERV1 -36 455 102 2145 120 45 36 chr13 78995078 78995437 -22877732 + THE1B LTR MaLR 1 362 -2 395 351 39 15 chr13 78995464 78995669 -22877500 + MLT1J LTR MaLR 154 363 -148 971 291 60 49 chr13 78995849 78996065 -22877104 + L2 LINE L2 2490 2702 -611 3455 78 7 0 chr13 78996065 78996514 -22876655 - MLT2A2 LTR ERVL -1 452 1 971 291 60 49 chr13 78996514 78996594 -22876575 + L2 LINE L2 2702 2780 -533 2160 185 21 30 chr13 78996594 78997026 -22876143 + MSTC LTR MaLR 1 428 0 971 291 60 49 chr13 78997026 78997544 -22875625 + L2 LINE L2 2780 3313 0 699 197 68 44 chr13 78997625 78997824 -22875345 - MLT1A1 LTR MaLR -150 215 15 2497 69 0 0 chr13 78998233 78998537 -22874632 - AluY SINE Alu -7 304 1 1484 180 24 27 chr13 78998890 78998992 -22874177 + AluJo SINE Alu 1 102 -210 1810 149 95 54 chr13 78998992 78999359 -22873810 + MSTB LTR MaLR 1 388 -38 204 40 0 0 chr13 78999369 78999394 -22873775 + (TGGGGG)n Simple_repeat Simple_repeat 2 26 0 2186 122 0 6 chr13 78999394 78999695 -22873474 - AluSx SINE Alu -11 301 1 1810 149 95 54 chr13 78999695 78999736 -22873433 + MSTB LTR MaLR 388 426 0 1484 180 24 27 chr13 78999736 78999927 -22873242 + AluJo SINE Alu 102 293 -19 21 0 0 0 chr13 79000016 79000037 -22873132 + AT_rich Low_complexity Low_complexity 1 21 0 735 208 0 0 chr13 79000147 79000277 -22872892 - FLAM_C SINE Alu -3 130 1 250 200 95 67 chr13 79000395 79000500 -22872669 - MIR SINE MIR -141 121 14 41 66 0 0 chr13 79000964 79001040 -22872129 + AT_rich Low_complexity Low_complexity 1 76 0 25 51 0 0 chr13 79001140 79001179 -22871990 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 79003079 79003108 -22870061 + AT_rich Low_complexity Low_complexity 1 29 0 3801 232 69 51 chr13 79003141 79003257 -22869912 + L1M4 LINE L1 37 149 -6393 1717 143 72 39 chr13 79003257 79003620 -22869549 - THE1C LTR MaLR 0 375 1 3801 232 69 51 chr13 79003620 79004684 -22868485 + L1M4 LINE L1 149 1238 -5304 464 254 9 9 chr13 79004697 79004807 -22868362 + FLAM_C SINE Alu 1 110 -33 26 64 0 0 chr13 79004824 79004871 -22868298 + AT_rich Low_complexity Low_complexity 1 47 0 2001 165 83 10 chr13 79004876 79005271 -22867898 - MSTB LTR MaLR 0 426 3 8060 193 51 11 chr13 79005278 79006255 -22866914 - MSTB-int LTR MaLR -5 1646 579 1944 141 54 25 chr13 79006255 79006609 -22866560 + THE1B LTR MaLR 1 364 0 8060 193 51 11 chr13 79006609 79007213 -22865956 - MSTB-int LTR MaLR -1072 579 1 1335 179 71 15 chr13 79007213 79007481 -22865688 - MSTB LTR MaLR 0 426 144 2041 272 65 38 chr13 79007483 79008648 -22864521 + L1M4 LINE L1 1263 2616 -4209 504 316 36 10 chr13 79009828 79010021 -22863148 - MLT1J LTR MaLR -313 198 1 22 0 0 0 chr13 79010690 79010712 -22862457 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 79011402 79011424 -22861745 + AT_rich Low_complexity Low_complexity 1 22 0 2019 132 3 13 chr13 79011648 79011951 -22861218 + AluSx SINE Alu 1 300 -12 302 237 0 82 chr13 79011985 79012082 -22861087 + MIR3 SINE MIR 92 180 -28 691 103 0 10 chr13 79013190 79013287 -22859882 - FLAM_C SINE Alu -26 117 22 2311 91 3 3 chr13 79014325 79014622 -22858547 + AluSx SINE Alu 5 301 -11 1125 158 9 35 chr13 79014726 79014954 -22858215 - L1MC1 LINE L1 -1 6332 6111 750 208 31 40 chr13 79015438 79015664 -22857505 + PABL_B LTR ERV1 437 660 -7 4486 190 40 11 chr13 79015673 79016993 -22856176 - L1MC1 LINE L1 -217 6116 4756 2059 153 0 0 chr13 79017140 79017448 -22855721 - AluSx SINE Alu -2 310 3 201 271 75 38 chr13 79017477 79017610 -22855559 + L2 LINE L2 1697 1834 -1480 312 263 34 0 chr13 79017623 79017741 -22855428 - L1MC4 LINE L1 -2 8040 7919 2198 94 6 41 chr13 79018109 79018429 -22854740 - AluSq SINE Alu 0 313 5 2256 94 0 3 chr13 79018453 79018741 -22854428 - AluY SINE Alu -24 287 1 2133 91 4 4 chr13 79018796 79019072 -22854097 - AluSx SINE Alu -30 282 7 724 271 43 0 chr13 79022361 79022549 -22850620 - MIR SINE MIR -52 210 15 783 105 7 59 chr13 79022815 79022968 -22850201 + L1MA9 LINE L1 6168 6312 0 365 164 0 0 chr13 79022974 79023035 -22850134 - Charlie5 DNA MER1_type -2520 92 32 933 178 9 2 chr13 79023039 79023220 -22849949 - MER3 DNA MER1_type -48 161 1 817 227 120 13 chr13 79023321 79023546 -22849623 + MIR SINE MIR 14 262 0 21 0 0 0 chr13 79025315 79025336 -22847833 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 79025885 79025907 -22847262 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr13 79026106 79026146 -22847023 + AT_rich Low_complexity Low_complexity 1 40 0 549 80 0 0 chr13 79026783 79026858 -22846311 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 296 319 64 0 chr13 79028014 79028108 -22845061 + L2 LINE L2 3214 3313 0 180 299 104 122 chr13 79028668 79028832 -22844337 + L2 LINE L2 3038 3198 -74 654 164 0 0 chr13 79029917 79030039 -22843130 + (CA)n Simple_repeat Simple_repeat 2 123 0 2380 53 0 23 chr13 79030741 79031042 -22842127 + AluY SINE Alu 4 297 -14 1839 178 3 3 chr13 79032770 79033062 -22840107 - AluJo SINE Alu -18 294 3 2001 111 73 26 chr13 79034074 79034416 -22838753 + THE1C LTR MaLR 18 375 0 605 144 0 0 chr13 79035448 79035538 -22837631 + 5S rRNA rRNA 1 90 -31 189 147 0 0 chr13 79035615 79035649 -22837520 + (A)n Simple_repeat Simple_repeat 1 34 0 3184 219 61 30 chr13 79036704 79036911 -22836258 - L1MD2 LINE L1 -10 6349 6150 297 0 0 0 chr13 79036911 79036944 -22836225 + (TG)n Simple_repeat Simple_repeat 2 34 0 3184 219 61 30 chr13 79036944 79037609 -22835560 - L1MD2 LINE L1 -209 6150 5450 3707 209 46 19 chr13 79038153 79039072 -22834097 + L1MA9 LINE L1 5329 6272 -40 180 0 0 0 chr13 79039765 79039785 -22833384 + (TA)n Simple_repeat Simple_repeat 1 20 0 249 265 38 49 chr13 79040465 79040650 -22832519 + L1MB7 LINE L1 2 184 -6358 1649 249 86 12 chr13 79040662 79041244 -22831925 + L1 LINE L1 2744 3368 -2778 1032 239 54 83 chr13 79041244 79041731 -22831438 + MLT1C LTR MaLR 1 593 0 1388 192 7 0 chr13 79041733 79042035 -22831134 + L1 LINE L1 3400 3703 -2443 909 427 94 16 chr13 79042035 79042342 -22830827 - MER1B DNA MER1_type 0 339 9 2625 254 97 27 chr13 79042350 79042442 -22830727 + L1MB7 LINE L1 4194 4278 -2366 2195 111 0 3 chr13 79042442 79042740 -22830429 + AluSx SINE Alu 1 297 -15 2625 254 97 27 chr13 79042740 79043091 -22830078 + L1MB7 LINE L1 4278 4603 -2041 1961 117 0 0 chr13 79043091 79043357 -22829812 + AluSg1 SINE Alu 35 300 -9 2625 254 97 27 chr13 79043357 79043406 -22829763 + L1MB7 LINE L1 4603 4647 -1997 1923 142 74 6 chr13 79043406 79043745 -22829424 + THE1B LTR MaLR 3 364 0 2625 254 97 27 chr13 79043745 79043900 -22829269 + L1MB7 LINE L1 4647 4790 -1854 2340 90 7 0 chr13 79043900 79044199 -22828970 + AluSq SINE Alu 1 301 -12 2625 254 97 27 chr13 79044199 79044559 -22828610 + L1MB7 LINE L1 4790 5275 -1369 349 169 0 0 chr13 79044559 79044618 -22828551 + L1MB1 LINE L1 5621 5679 -489 386 113 0 0 chr13 79044642 79044695 -22828474 + Charlie3 DNA MER1_type 138 190 -2520 2139 178 31 0 chr13 79044695 79045117 -22828052 + L1MB1 LINE L1 5699 6133 -35 4128 196 54 30 chr13 79045133 79046535 -22826634 + L1MB7 LINE L1 5251 6682 0 22 35 0 0 chr13 79047034 79047063 -22826106 + AT_rich Low_complexity Low_complexity 1 29 0 2210 115 3 0 chr13 79047383 79047695 -22825474 + AluSp SINE Alu 1 313 0 204 179 0 0 chr13 79047793 79047832 -22825337 + (CATA)n Simple_repeat Simple_repeat 4 42 0 193 258 32 32 chr13 79049099 79049161 -22824008 - L2 LINE L2 -1 3312 3251 2069 222 106 34 chr13 79051686 79052373 -22820796 + Charlie2 DNA MER1_type 2004 2759 -103 1708 145 26 15 chr13 79052373 79052642 -22820527 - AluSx SINE Alu -22 290 19 2069 222 106 34 chr13 79052642 79052755 -22820414 + Charlie2 DNA MER1_type 2759 2862 0 517 221 14 57 chr13 79053633 79053773 -22819396 + L2 LINE L2 3180 3313 0 180 339 0 16 chr13 79054000 79054062 -22819107 - L2 LINE L2 -1556 1758 1698 223 387 11 11 chr13 79054272 79054365 -22818804 - MIR SINE MIR -134 128 36 1277 206 65 49 chr13 79054385 79054816 -22818353 + LTR47B LTR ERVL 4 441 -2 232 354 21 31 chr13 79055381 79055477 -22817692 - MIR SINE MIR -74 134 40 1987 110 0 31 chr13 79055967 79056258 -22816911 - AluSx SINE Alu -30 282 1 1844 208 42 46 chr13 79058767 79059248 -22813921 + MER67D LTR ERV1 22 500 -14 194 356 42 17 chr13 79060021 79060139 -22813030 - L2 LINE L2 -1 3312 3192 1332 112 112 0 chr13 79060576 79060809 -22812360 + L1MA8 LINE L1 5676 5934 -357 3691 72 2 2 chr13 79060809 79061292 -22811877 + L1PA7 LINE L1 5662 6149 -5 1690 108 90 36 chr13 79061292 79061619 -22811550 + L1MA8 LINE L1 5936 6286 -5 380 316 7 36 chr13 79061746 79061885 -22811284 - MLT1I LTR MaLR -123 286 152 1348 219 47 3 chr13 79061909 79062210 -22810959 - MER63 DNA MER1_type -1 1061 748 307 231 15 0 chr13 79062292 79062357 -22810812 - MLT1I LTR MaLR -274 135 70 234 0 0 0 chr13 79062719 79062745 -22810424 + (CA)n Simple_repeat Simple_repeat 1 26 0 237 65 0 0 chr13 79063121 79063152 -22810017 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1944 147 0 0 chr13 79064839 79065165 -22808004 + AluSx SINE Alu 1 326 0 26 0 0 0 chr13 79066176 79066202 -22806967 + AT_rich Low_complexity Low_complexity 1 26 0 2170 126 0 10 chr13 79066733 79067042 -22806127 + AluSx SINE Alu 3 308 -4 196 234 0 19 chr13 79068131 79068238 -22804931 + (TA)n Simple_repeat Simple_repeat 2 106 0 296 202 8 65 chr13 79068241 79068365 -22804804 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 404 67 17 0 chr13 79069339 79069399 -22803770 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 1525 181 35 48 chr13 79069438 79069753 -22803416 - AluJo SINE Alu -1 311 1 239 190 0 0 chr13 79070374 79070432 -22802737 - LTR66 LTR ERVL -159 451 394 226 310 0 0 chr13 79070758 79070816 -22802353 - MER117 DNA MER1_type -89 108 51 254 368 88 25 chr13 79070951 79071155 -22802014 - L2 LINE L2 -16 3256 3040 433 188 0 0 chr13 79071268 79071353 -22801816 + MIR SINE MIR 120 204 -58 330 147 0 0 chr13 79071359 79071427 -22801742 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 1460 183 14 28 chr13 79071527 79071812 -22801357 + MLT1A1 LTR MaLR 1 281 -84 362 350 34 23 chr13 79072087 79072264 -22800905 + MER5A DNA MER1_type 8 186 -3 188 260 0 20 chr13 79072982 79073032 -22800137 + L2 LINE L2 3265 3313 0 307 281 70 85 chr13 79073335 79073666 -22799503 + L1ME4a LINE L1 5754 6079 -42 499 256 24 126 chr13 79074420 79074617 -22798552 - MIR SINE MIR -74 188 11 1033 207 9 22 chr13 79074617 79074839 -22798330 - MER20 DNA MER1_type 0 219 1 495 216 0 10 chr13 79074930 79075027 -22798142 + MLT1A1 LTR MaLR 265 360 -145 195 114 0 0 chr13 79075027 79075062 -22798107 + (A)n Simple_repeat Simple_repeat 1 35 0 719 172 21 35 chr13 79075062 79075207 -22797962 + MLT1D LTR MaLR 363 505 0 291 310 21 49 chr13 79075248 79075390 -22797779 - MIR SINE MIR -115 147 10 26 0 0 0 chr13 79075420 79075446 -22797723 + AT_rich Low_complexity Low_complexity 1 26 0 373 315 137 15 chr13 79076006 79076203 -22796966 + MIR SINE MIR 5 225 -37 2270 102 0 19 chr13 79076226 79076539 -22796630 - AluSx SINE Alu -5 307 1 21 0 0 0 chr13 79076557 79076578 -22796591 + AT_rich Low_complexity Low_complexity 1 21 0 2480 158 29 5 chr13 79076831 79077249 -22795920 + MSTA LTR MaLR 1 428 0 250 282 61 46 chr13 79077312 79077443 -22795726 + L2 LINE L2 2622 2754 -560 2095 119 7 7 chr13 79077444 79077754 -22795415 + AluSx SINE Alu 1 310 -2 307 265 0 78 chr13 79077832 79077934 -22795235 + MER5B DNA MER1_type 10 103 -75 33 0 0 0 chr13 79077961 79077994 -22795175 + AT_rich Low_complexity Low_complexity 1 33 0 353 129 14 0 chr13 79078113 79078183 -22794986 + T-rich Low_complexity Low_complexity 5 75 0 222 239 0 0 chr13 79078184 79078230 -22794939 + CT-rich Low_complexity Low_complexity 1 46 0 650 172 22 0 chr13 79078230 79078364 -22794805 + MER33 DNA MER1_type 188 324 0 201 357 102 10 chr13 79078365 79078463 -22794706 + L2 LINE L2 3149 3255 -17 333 0 0 0 chr13 79079136 79079173 -22793996 + (TG)n Simple_repeat Simple_repeat 2 38 0 327 311 39 94 chr13 79080211 79080465 -22792704 - MIR SINE MIR -11 251 12 903 199 57 182 chr13 79081775 79082428 -22790741 + MLT1G LTR MaLR 1 587 0 338 341 28 52 chr13 79082536 79082747 -22790422 - L3b LINE CR1 -175 1408 1203 386 332 34 51 chr13 79082749 79082984 -22790185 + MIR SINE MIR 20 250 -12 455 205 36 0 chr13 79083083 79083195 -22789974 + L1MA8 LINE L1 6171 6286 -5 249 139 0 0 chr13 79083317 79083360 -22789809 + (A)n Simple_repeat Simple_repeat 1 43 0 236 29 0 29 chr13 79084035 79084069 -22789100 + (CATTC)n Simple_repeat Simple_repeat 5 37 0 963 201 35 40 chr13 79085371 79085570 -22787599 + MER20 DNA MER1_type 22 219 0 213 194 0 0 chr13 79085917 79085953 -22787216 + polypyrimidine Low_complexity Low_complexity 2 37 0 3235 143 124 88 chr13 79086101 79086898 -22786271 + LTR1B LTR ERV1 1 826 0 436 349 112 38 chr13 79087112 79088044 -22785125 - L2 LINE L2 -499 2815 1815 2232 151 92 0 chr13 79088726 79089116 -22784053 - MSTB LTR MaLR 0 426 1 2181 109 7 0 chr13 79089921 79090214 -22782955 - AluSg SINE Alu -15 295 1 22 35 0 0 chr13 79090831 79090860 -22782309 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 79091186 79091208 -22781961 + AT_rich Low_complexity Low_complexity 1 22 0 253 319 84 47 chr13 79092880 79093093 -22780076 - L2 LINE L2 -832 2482 2262 3170 24 0 3 chr13 79093586 79093960 -22779209 + L1PA4 LINE L1 5778 6150 -5 216 0 0 0 chr13 79094523 79094547 -22778622 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1322 227 72 63 chr13 79094868 79095256 -22777913 + MLT1C LTR MaLR 6 401 -66 2402 50 0 0 chr13 79095256 79095569 -22777600 - AluY SINE Alu 0 313 1 1322 227 72 63 chr13 79095569 79095637 -22777532 + MLT1C LTR MaLR 401 467 0 429 269 115 0 chr13 79096250 79096380 -22776789 - MIR SINE MIR -70 192 48 243 0 0 0 chr13 79096593 79096620 -22776549 + (CA)n Simple_repeat Simple_repeat 2 28 0 286 270 0 0 chr13 79096620 79096683 -22776486 + MER82 DNA MER2_type 3 65 -588 234 137 0 0 chr13 79097565 79097576 -22775593 + (CA)n Simple_repeat Simple_repeat 1 11 -40 2288 112 48 28 chr13 79097576 79097933 -22775236 - THE1B LTR MaLR 0 364 1 234 137 0 0 chr13 79097933 79097972 -22775197 + (CA)n Simple_repeat Simple_repeat 10 51 0 894 328 67 17 chr13 79098868 79099332 -22773837 - L2 LINE L2 0 3313 2827 208 259 129 35 chr13 79100092 79100208 -22772961 - L2 LINE L2 -69 3244 3118 182 325 175 8 chr13 79100297 79100417 -22772752 + MIR3 SINE MIR 1 140 -68 21 0 0 0 chr13 79100571 79100592 -22772577 + AT_rich Low_complexity Low_complexity 1 21 0 221 276 69 0 chr13 79102730 79102788 -22770381 - MIR SINE MIR -152 110 49 2265 30 0 0 chr13 79102979 79103247 -22769922 + L1PA3 LINE L1 5884 6151 -4 1118 189 15 0 chr13 79103281 79103487 -22769682 - AluJb SINE Alu -20 292 84 315 275 238 10 chr13 79104287 79104480 -22768689 - MIR SINE MIR -25 237 1 1636 174 43 3 chr13 79104799 79105126 -22768043 - L1 LINE L1 -996 5150 4811 * 5348 147 44 9 chr13 79105120 79106097 -22767072 + L1MA6 LINE L1 5284 6294 -6 2182 114 7 0 chr13 79106108 79106406 -22766763 - AluSg SINE Alu -10 300 1 28 0 0 0 chr13 79107200 79107228 -22765941 + AT_rich Low_complexity Low_complexity 1 28 0 302 226 12 36 chr13 79109013 79109097 -22764072 + L1MCa LINE L1 1984 2065 -4361 263 257 128 73 chr13 79109634 79109813 -22763356 + L2 LINE L2 3125 3313 0 1215 210 58 56 chr13 79110558 79110934 -22762235 - L1MA4 LINE L1 -2 6298 5922 1780 170 0 17 chr13 79111836 79112183 -22760986 - L1MA4 LINE L1 -6 6294 5954 450 176 0 0 chr13 79112747 79112832 -22760337 + (TA)n Simple_repeat Simple_repeat 1 85 0 279 310 0 0 chr13 79112850 79112966 -22760203 + (TA)n Simple_repeat Simple_repeat 2 117 0 263 277 0 32 chr13 79113661 79113755 -22759414 - MARNA DNA Mariner -102 484 394 448 291 8 8 chr13 79114350 79114484 -22758685 + L3 LINE CR1 435 568 -1009 2043 112 17 3 chr13 79114672 79114968 -22758201 + AluSq SINE Alu 1 300 -13 227 232 0 63 chr13 79115883 79115978 -22757191 + L1MC4 LINE L1 6614 6702 -1340 312 203 31 16 chr13 79116068 79116196 -22756973 + (CATA)n Simple_repeat Simple_repeat 3 132 0 321 282 15 30 chr13 79116265 79116396 -22756773 + (TATATG)n Simple_repeat Simple_repeat 1 129 0 27 29 0 0 chr13 79117294 79117328 -22755841 + AT_rich Low_complexity Low_complexity 1 34 0 21 89 0 0 chr13 79120618 79120674 -22752495 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr13 79120808 79120837 -22752332 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chr13 79121254 79121278 -22751891 + (A)n Simple_repeat Simple_repeat 1 24 0 351 248 71 18 chr13 79122765 79122878 -22750291 - L1ME LINE L1 -470 5651 5533 199 394 118 8 chr13 79122889 79123016 -22750153 + L2 LINE L2 3111 3251 -21 21 36 0 0 chr13 79124153 79124181 -22748988 + AT_rich Low_complexity Low_complexity 1 28 0 1544 77 11 98 chr13 79124362 79124636 -22748533 + L1P5 LINE L1 5293 5542 -609 351 248 71 18 chr13 79124668 79124781 -22748388 + L1MC3 LINE L1 5533 5651 -470 499 256 0 7 chr13 79125346 79125483 -22747686 + L1MC3 LINE L1 6044 6179 -1606 228 293 28 28 chr13 79125587 79125693 -22747476 + MIR SINE MIR 47 152 -110 562 224 26 33 chr13 79125729 79125881 -22747288 - MLT1D LTR MaLR 0 505 355 1019 207 9 22 chr13 79126095 79126317 -22746852 + MER20 DNA MER1_type 1 219 0 556 238 46 146 chr13 79126318 79126599 -22746570 + MIR SINE MIR 10 262 0 1263 193 16 4 chr13 79127102 79127356 -22745813 + MER33 DNA MER1_type 2 258 -66 1025 247 25 7 chr13 79127365 79127644 -22745525 - L1MB5 LINE L1 -8 6166 5883 279 244 13 0 chr13 79127636 79127714 -22745455 - L1MB5 LINE L1 -213 5961 5883 * 246 250 0 0 chr13 79127706 79127770 -22745399 - L1MB5 LINE L1 -213 5961 5898 * 856 231 123 0 chr13 79127776 79128027 -22745142 - L1MB5 LINE L1 -213 5961 5680 2337 180 33 0 chr13 79128039 79128489 -22744680 - L1PA16 LINE L1 -16 6150 5686 451 177 10 21 chr13 79128492 79128588 -22744581 + MER33 DNA MER1_type 268 362 -1 336 256 85 34 chr13 79128721 79128897 -22744272 + MER5A DNA MER1_type 1 185 -4 265 294 0 0 chr13 79129314 79129382 -22743787 + (TA)n Simple_repeat Simple_repeat 2 69 0 2089 125 3 0 chr13 79130494 79130797 -22742372 - AluSx SINE Alu -8 304 1 1962 102 0 0 chr13 79131742 79132007 -22741162 + AluSc SINE Alu 1 265 -44 197 33 33 0 chr13 79132018 79132048 -22741121 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 29 0 0 0 chr13 79132221 79132250 -22740919 + AT_rich Low_complexity Low_complexity 1 29 0 656 85 11 0 chr13 79132253 79132387 -22740782 + AluY SINE Alu 196 311 0 698 200 0 8 chr13 79132557 79132682 -22740487 - FLAM_C SINE Alu -9 124 1 268 281 244 6 chr13 79132728 79132892 -22740277 - MIR SINE MIR -3 259 57 585 83 0 0 chr13 79133308 79133392 -22739777 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 647 251 76 58 chr13 79133471 79133865 -22739304 + L1MC5 LINE L1 7458 7858 -103 687 230 6 19 chr13 79135107 79135268 -22737901 - MLT1E LTR MaLR 0 593 435 416 253 83 13 chr13 79135242 79135271 -22737898 - MLT1F1 LTR MaLR -390 203 177 * 1688 170 0 7 chr13 79135271 79135554 -22737615 - AluJo SINE Alu -31 281 1 416 253 83 13 chr13 79135554 79135698 -22737471 - MLT1F1 LTR MaLR -416 177 25 359 303 171 0 chr13 79136401 79136553 -22736616 + LTR16A LTR ERVL 251 428 -22 243 0 0 0 chr13 79137104 79137131 -22736038 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2343 50 0 4 chr13 79137137 79137417 -22735752 - AluY SINE Alu -32 279 1 623 265 140 77 chr13 79137618 79138010 -22735159 - L1MEd LINE L1 -5350 769 353 732 246 20 5 chr13 79138014 79138207 -22734962 + MER63C DNA MER1_type 1 196 -734 1685 211 15 23 chr13 79138207 79138670 -22734499 - MER89 LTR ERV1 -1 558 1 2267 206 88 7 chr13 79138670 79139214 -22733955 + MER63C DNA MER1_type 192 779 -151 899 124 0 0 chr13 79139221 79139342 -22733827 - FLAM_C SINE Alu -19 124 4 444 184 48 0 chr13 79139349 79139452 -22733717 + MER63C DNA MER1_type 783 890 -40 706 264 67 57 chr13 79139550 79139849 -22733320 - L1MEd LINE L1 -5813 306 5 262 140 70 0 chr13 79142565 79142622 -22730547 + L1MB1 LINE L1 5959 6019 -170 23 33 0 0 chr13 79142622 79142652 -22730517 + AT_rich Low_complexity Low_complexity 1 30 0 1670 154 18 3 chr13 79142652 79142937 -22730232 - AluJb SINE Alu -23 289 1 961 149 12 0 chr13 79142937 79143105 -22730064 + L1MB4 LINE L1 6010 6179 -1 308 24 24 0 chr13 79144361 79144402 -22728767 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 404 270 24 32 chr13 79144478 79144604 -22728565 + MIR SINE MIR 29 153 -109 430 148 49 31 chr13 79145500 79145662 -22727507 + (TATG)n Simple_repeat Simple_repeat 4 168 0 262 204 0 82 chr13 79145734 79145832 -22727337 - L1MC4 LINE L1 -1339 6703 6614 251 214 45 34 chr13 79145757 79145846 -22727323 + L1MC4 LINE L1 6614 6703 -1339 * 213 356 0 0 chr13 79146558 79146645 -22726524 - MIR3 SINE MIR -1 207 121 1339 201 14 3 chr13 79146811 79147099 -22726070 - L1MB5 LINE L1 -7 6167 5877 974 191 62 9 chr13 79147224 79147434 -22725735 - AluJb SINE Alu -5 307 87 408 40 0 0 chr13 79148152 79148202 -22724967 + (CA)n Simple_repeat Simple_repeat 2 51 0 5253 187 30 8 chr13 79150165 79152074 -22721095 - L1PA11 LINE L1 -2 6172 4177 2226 116 0 0 chr13 79152074 79152376 -22720793 - AluSx SINE Alu -10 302 1 5253 187 30 8 chr13 79152376 79152456 -22720713 - L1PA11 LINE L1 -1997 4177 4100 882 274 35 0 chr13 79152636 79152837 -22720332 - MIR SINE MIR -20 242 35 2578 55 0 6 chr13 79153715 79154027 -22719142 - AluY SINE Alu -1 310 1 357 254 167 29 chr13 79154898 79155036 -22718133 - MIR SINE MIR -43 219 63 24 0 0 0 chr13 79155325 79155349 -22717820 + AT_rich Low_complexity Low_complexity 1 24 0 200 262 71 12 chr13 79155366 79155450 -22717719 + L2 LINE L2 3184 3272 0 237 33 0 0 chr13 79158016 79158046 -22715123 + (T)n Simple_repeat Simple_repeat 1 30 0 2014 74 0 0 chr13 79158081 79158346 -22714823 + AluY SINE Alu 39 303 0 1043 286 50 45 chr13 79158354 79158816 -22714353 + MLT1H LTR MaLR 71 534 -15 1851 162 10 17 chr13 79159565 79159867 -22713302 - AluJo SINE Alu -11 301 2 415 351 32 13 chr13 79160063 79160217 -22712952 - L2 LINE L2 -5 3267 3111 25 31 0 0 chr13 79161190 79161222 -22711947 + AT_rich Low_complexity Low_complexity 1 32 0 339 173 49 0 chr13 79162530 79162611 -22710558 - L1MB3 LINE L1 -8 6175 6091 1583 147 20 8 chr13 79162621 79162897 -22710272 - L1MA4 LINE L1 -141 6023 5752 263 191 0 0 chr13 79162926 79162968 -22710201 + 5S rRNA rRNA 1 42 -79 723 83 0 0 chr13 79165803 79165911 -22707258 + (TC)n Simple_repeat Simple_repeat 1 108 0 2077 148 21 0 chr13 79165961 79166299 -22706870 - MER7A DNA MER2_type 0 346 4 596 304 111 5 chr13 79167708 79167925 -22705244 - MIR SINE MIR -15 247 8 674 217 127 0 chr13 79167925 79168091 -22705078 + MER5A DNA MER1_type 2 188 -1 25 51 0 0 chr13 79168135 79168174 -22704995 + AT_rich Low_complexity Low_complexity 1 39 0 473 0 18 0 chr13 79170425 79170482 -22702687 + (TG)n Simple_repeat Simple_repeat 2 59 0 1553 199 35 15 chr13 79170952 79171294 -22701875 + MLT1D LTR MaLR 113 461 -44 259 191 56 0 chr13 79171471 79171560 -22701609 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 789 184 162 0 chr13 79172047 79172226 -22700943 + MER3 DNA MER1_type 1 208 -1 453 62 0 0 chr13 79172239 79172304 -22700865 + (TG)n Simple_repeat Simple_repeat 2 66 0 25 0 0 0 chr13 79172304 79172329 -22700840 + AT_rich Low_complexity Low_complexity 1 25 0 520 175 67 33 chr13 79172450 79172570 -22700599 + MER5C DNA MER1_type 1 124 -200 917 192 134 22 chr13 79173697 79173921 -22699248 + LTR16A1 LTR ERVL 195 443 -14 30 83 0 0 chr13 79174388 79174460 -22698709 + AT_rich Low_complexity Low_complexity 1 72 0 257 138 46 77 chr13 79175588 79175653 -22697516 - MLT1J LTR MaLR -10 501 439 918 154 0 13 chr13 79176388 79176537 -22696632 - FRAM SINE Alu -10 166 20 216 0 0 0 chr13 79176986 79177010 -22696159 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 540 265 99 31 chr13 79177882 79178105 -22695064 - MLT1J LTR MaLR -36 475 238 2166 121 0 16 chr13 79178109 79178423 -22694746 + AluSc SINE Alu 1 309 0 945 162 36 40 chr13 79178425 79178463 -22694706 + AluJo SINE Alu 92 129 -183 189 94 0 0 chr13 79178463 79178495 -22694674 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 945 162 36 40 chr13 79178495 79178678 -22694491 + AluJo SINE Alu 129 312 0 258 262 0 36 chr13 79178768 79178852 -22694317 - MLT1J LTR MaLR -391 120 40 3306 221 159 25 chr13 79179448 79179560 -22693609 - L1MC4a LINE L1 -2 7806 7710 2417 117 75 8 chr13 79179560 79179712 -22693457 + MSTA LTR MaLR 1 141 -287 186 43 0 0 chr13 79179712 79179735 -22693434 + (TGAG)n Simple_repeat Simple_repeat 3 25 0 2417 117 75 8 chr13 79179735 79179983 -22693186 + MSTA LTR MaLR 141 428 0 3306 221 159 25 chr13 79179983 79180931 -22692238 - L1MC4a LINE L1 -98 7710 6604 26 30 0 0 chr13 79180950 79180983 -22692186 + AT_rich Low_complexity Low_complexity 1 33 0 560 186 47 51 chr13 79180991 79181200 -22691969 - L1MC4a LINE L1 -2 7806 6132 * 3581 238 77 33 chr13 79181187 79181931 -22691238 - L1MC4a LINE L1 -718 5615 5811 869 62 78 8 chr13 79181931 79182059 -22691110 - MER85 DNA T2_type -2 137 1 3581 238 77 33 chr13 79182059 79182467 -22690702 - L1MC4a LINE L1 -521 5812 5423 30 0 0 0 chr13 79182666 79182696 -22690473 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 79183011 79183032 -22690137 + AT_rich Low_complexity Low_complexity 1 21 0 543 255 163 16 chr13 79183502 79183686 -22689483 - MIR SINE MIR -49 213 3 186 284 216 0 chr13 79184405 79184507 -22688662 + MIR SINE MIR 86 209 -53 276 384 0 23 chr13 79186153 79186286 -22686883 - L2 LINE L2 0 3272 3143 1515 192 14 34 chr13 79186582 79186879 -22686290 + AluJo SINE Alu 7 297 -15 887 284 113 18 chr13 79187130 79187404 -22685765 + L2 LINE L2 2885 3208 -105 1948 131 58 45 chr13 79187404 79187763 -22685406 + THE1B LTR MaLR 1 364 0 887 284 113 18 chr13 79187763 79187876 -22685293 + L2 LINE L2 3208 3309 -4 314 328 32 116 chr13 79189640 79189924 -22683245 - L2 LINE L2 -79 3193 2934 25 0 0 0 chr13 79191059 79191084 -22682085 + AT_rich Low_complexity Low_complexity 1 25 0 319 203 51 25 chr13 79191210 79191289 -22681880 - MER94 DNA DNA -51 83 3 794 162 45 7 chr13 79191992 79192146 -22681023 - MER5A DNA MER1_type -29 160 1 192 246 18 18 chr13 79193637 79193694 -22679475 + MIR3 SINE MIR 120 176 -32 189 121 0 0 chr13 79195990 79196023 -22677146 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1804 179 19 22 chr13 79197177 79197541 -22675628 - MLT1A1 LTR MaLR -2 363 1 645 231 37 90 chr13 79197794 79198062 -22675107 + L2 LINE L2 3059 3312 -1 2119 121 3 0 chr13 79199845 79200167 -22673002 - AluSx SINE Alu 0 323 1 505 201 7 97 chr13 79201115 79201259 -22671910 + FLAM_C SINE Alu 1 131 -2 2001 165 83 10 chr13 79201293 79201688 -22671481 - MSTB LTR MaLR 0 426 3 8049 194 51 10 chr13 79201695 79202671 -22670498 - MSTB-int LTR MaLR -5 1646 579 1927 144 54 25 chr13 79202671 79203025 -22670144 + THE1B LTR MaLR 1 364 0 8049 194 51 10 chr13 79203025 79203629 -22669540 - MSTB-int LTR MaLR -1072 579 1 1335 179 71 15 chr13 79203629 79203897 -22669272 - MSTB LTR MaLR 0 426 144 2060 271 65 38 chr13 79203899 79205065 -22668104 + L1M4c LINE L1 1001 2354 -4209 520 311 36 10 chr13 79206245 79206438 -22666731 - MLT1J LTR MaLR -313 198 1 22 0 0 0 chr13 79207815 79207837 -22665332 + AT_rich Low_complexity Low_complexity 1 22 0 1954 141 3 13 chr13 79208061 79208359 -22664810 + AluSx SINE Alu 1 295 -17 475 327 99 78 chr13 79209349 79209422 -22663747 + L1MEc LINE L1 263 333 -6039 1953 145 3 22 chr13 79209422 79209739 -22663430 + AluSx SINE Alu 1 311 -1 475 327 99 78 chr13 79209739 79210381 -22662788 + L1MEc LINE L1 333 993 -5379 21 0 0 0 chr13 79210518 79210539 -22662630 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 79210546 79210566 -22662603 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 384 273 63 30 chr13 79210764 79211134 -22662035 + L1MEd LINE L1 1282 1816 -4747 520 316 102 32 chr13 79211596 79211938 -22661231 - LTR33 LTR ERVL -155 366 1 491 282 106 55 chr13 79212551 79212899 -22660270 + L1MEd LINE L1 2587 2952 -3430 320 294 107 30 chr13 79213562 79213936 -22659233 + L1MEc LINE L1 1148 1492 -5071 2749 93 8 11 chr13 79213936 79214312 -22658857 + THE1C LTR MaLR 1 375 0 320 294 107 30 chr13 79214312 79214702 -22658467 + L1MEc LINE L1 1492 1991 -4572 44 20 0 0 chr13 79214796 79214847 -22658322 + AT_rich Low_complexity Low_complexity 1 51 0 729 252 118 62 chr13 79214979 79215766 -22657403 + L1M4 LINE L1 4490 5320 -826 1570 172 10 33 chr13 79216923 79217225 -22655944 + AluJo SINE Alu 4 298 -14 2039 143 71 22 chr13 79217383 79217789 -22655380 - MSTB LTR MaLR 0 426 1 25 0 0 0 chr13 79218328 79218353 -22654816 + AT_rich Low_complexity Low_complexity 1 25 0 1421 188 70 3 chr13 79218376 79218733 -22654436 + Charlie5 DNA MER1_type 2244 2624 0 300 261 160 6 chr13 79218734 79218894 -22654275 + MIR SINE MIR 18 199 -62 277 280 43 21 chr13 79220457 79220550 -22652619 - MIR SINE MIR -67 195 101 1942 163 0 0 chr13 79220569 79220869 -22652300 + AluJo SINE Alu 1 300 -12 1631 183 14 10 chr13 79220874 79221163 -22652006 + AluJo SINE Alu 1 290 -22 599 303 51 25 chr13 79221204 79221478 -22651691 - MLT1I LTR MaLR -128 281 1 292 289 46 33 chr13 79223454 79223606 -22649563 - MIR SINE MIR -26 236 83 24 0 0 0 chr13 79223618 79223642 -22649527 + AT_rich Low_complexity Low_complexity 1 24 0 373 62 25 49 chr13 79224953 79225034 -22648135 + (TAGA)n Simple_repeat Simple_repeat 1 79 0 433 294 28 57 chr13 79225647 79225824 -22647345 - MER5A DNA MER1_type -1 188 17 1378 173 38 70 chr13 79226179 79226302 -22646867 + AluJo SINE Alu 1 126 -186 216 0 0 0 chr13 79226302 79226326 -22646843 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1378 173 38 70 chr13 79226326 79226515 -22646654 + AluJo SINE Alu 126 303 -9 1575 157 75 46 chr13 79227093 79227207 -22645962 + MSTA LTR MaLR 14 123 -241 5168 66 40 7 chr13 79227207 79227906 -22645263 + LTR30 LTR ERV1 1 722 0 1575 157 75 46 chr13 79227906 79228098 -22645071 + MSTA LTR MaLR 123 328 -36 1833 121 60 0 chr13 79228098 79228427 -22644742 - AluSx SINE Alu 0 346 2 1575 157 75 46 chr13 79228427 79228466 -22644703 + MSTA LTR MaLR 328 364 0 491 342 89 34 chr13 79229457 79229837 -22643332 + LTR16C LTR ERVL 91 491 0 936 257 42 0 chr13 79229872 79230086 -22643083 - MER58A DNA MER1_type 0 224 2 246 236 18 0 chr13 79231051 79231106 -22642063 + MLT1I LTR MaLR 352 407 -2 260 343 30 0 chr13 79231109 79231208 -22641961 - MIR SINE MIR -152 110 9 641 154 0 26 chr13 79234027 79234144 -22639025 + FLAM_C SINE Alu 30 143 0 846 210 0 37 chr13 79234163 79234364 -22638805 + AluJo SINE Alu 127 321 0 183 325 158 0 chr13 79234956 79235070 -22638099 + MIR SINE MIR 124 255 -7 602 225 0 0 chr13 79235252 79235372 -22637797 + FLAM_C SINE Alu 1 120 -23 272 87 0 43 chr13 79235760 79235806 -22637363 + LTR14B LTR ERVK 3 46 -562 * 2032 111 114 35 chr13 79235794 79236163 -22637006 + LTR14B LTR ERVK 211 608 0 5687 64 29 8 chr13 79236163 79236915 -22636254 + HERVK14 LTR ERVK 1 768 -5177 9257 60 8 15 chr13 79237178 79238372 -22634797 + HERV17 LTR ERV1 830 2014 -6612 * 10771 52 10 5 chr13 79238357 79239675 -22633494 + HERV17 LTR ERV1 2430 3754 -4872 1237 7 28 0 chr13 79239654 79239798 -22633371 + HERV17 LTR ERV1 5405 5552 -3074 * 303 62 0 0 chr13 79239799 79239847 -22633322 + HERV17 LTR ERV1 434 481 -8145 * 5314 63 107 90 chr13 79239834 79240542 -22632627 + HERVK14 LTR ERVK 5038 5813 -132 348 177 0 16 chr13 79240542 79240604 -22632565 + MER41C LTR ERV1 1 61 -493 5314 63 107 90 chr13 79240604 79240740 -22632429 + HERVK14 LTR ERVK 5813 5945 0 303 0 22 43 chr13 79240743 79240789 -22632380 + LTR14B LTR ERVK 1 45 -563 * 2027 93 129 38 chr13 79240778 79241143 -22632026 + LTR14B LTR ERVK 211 608 0 491 252 68 77 chr13 79241528 79241929 -22631240 + MLT1H LTR MaLR 83 542 -7 444 198 16 41 chr13 79243480 79243601 -22629568 - L1PA16 LINE L1 0 6166 6049 2007 169 96 147 chr13 79243606 79244108 -22629061 - L1PA15-16 LINE L1 -3605 3244 2718 987 105 0 15 chr13 79244108 79244241 -22628928 - AluSq/x SINE Alu -182 131 1 2007 169 96 147 chr13 79244241 79244744 -22628425 - L1PA15-16 LINE L1 -4131 2718 2161 1570 176 18 17 chr13 79245084 79245474 -22627695 + L1MC/D LINE L1 5159 5548 -743 2133 91 4 4 chr13 79246237 79246513 -22626656 + AluSx SINE Alu 7 282 -30 2283 87 0 3 chr13 79246567 79246855 -22626314 + AluY SINE Alu 1 287 -24 2194 94 6 41 chr13 79246879 79247199 -22625970 + AluSq SINE Alu 5 313 0 312 263 34 0 chr13 79247567 79247685 -22625484 + L1MC4 LINE L1 7919 8040 -2 201 271 75 38 chr13 79247698 79247831 -22625338 - L2 LINE L2 -1480 1834 1697 2043 156 0 0 chr13 79247860 79248168 -22625001 + AluSx SINE Alu 3 310 -2 4520 189 40 10 chr13 79248315 79249634 -22623535 + L1MC1 LINE L1 4756 6116 -217 750 208 31 40 chr13 79249643 79249869 -22623300 - PABL_B LTR ERV1 -7 660 437 1125 158 9 35 chr13 79250353 79250581 -22622588 + L1MC1 LINE L1 6111 6332 -1 2393 87 0 3 chr13 79250685 79250984 -22622185 - AluSx SINE Alu -10 302 5 691 103 0 10 chr13 79252020 79252117 -22621052 + FLAM_C SINE Alu 22 117 -26 313 227 0 82 chr13 79253225 79253322 -22619847 - MIR3 SINE MIR -28 180 92 2362 95 0 0 chr13 79253356 79253660 -22619509 - AluSg SINE Alu -6 304 1 230 343 131 0 chr13 79253890 79253989 -22619180 + L2 LINE L2 3158 3269 -3 2383 175 16 12 chr13 79255751 79256174 -22616995 + MSTB LTR MaLR 1 425 -1 191 355 0 89 chr13 79258284 79258408 -22614761 - MIR3 SINE MIR -82 126 14 13677 29 0 0 chr13 79258982 79261374 -22611795 + L1PA3 LINE L1 3764 6155 0 192 250 42 0 chr13 79261589 79261637 -22611532 - L2 LINE L2 -2 3311 3262 450 14 28 42 chr13 79261644 79261716 -22611453 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 1142 297 63 13 chr13 79261737 79262118 -22611051 - LTR33 LTR ERVL -12 509 110 22 0 0 0 chr13 79262237 79262259 -22610910 + AT_rich Low_complexity Low_complexity 1 22 0 42 20 0 0 chr13 79262282 79262331 -22610838 + AT_rich Low_complexity Low_complexity 1 49 0 1144 234 7 18 chr13 79262331 79262609 -22610560 - MLT2C1 LTR ERVL -118 279 5 3075 145 56 27 chr13 79262609 79263195 -22609974 - LTR26 LTR ERV1 0 603 1 1464 296 135 12 chr13 79263202 79264101 -22609068 - L2 LINE L2 -92 3221 2220 280 409 34 20 chr13 79264214 79264348 -22608821 + L2 LINE L2 3121 3259 -13 302 0 26 0 chr13 79264348 79264386 -22608783 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 280 409 34 20 chr13 79264386 79264400 -22608769 + L2 LINE L2 3259 3271 -1 21 36 0 0 chr13 79264901 79264929 -22608240 + AT_rich Low_complexity Low_complexity 1 28 0 1935 102 4 4 chr13 79265178 79265442 -22607727 - AluSx SINE Alu -14 298 35 266 222 0 0 chr13 79265594 79265648 -22607521 - MLT1L LTR MaLR -414 201 148 538 292 49 28 chr13 79266152 79266324 -22606845 + L1ME4a LINE L1 5533 5715 -406 2027 119 29 57 chr13 79266324 79266710 -22606459 + THE1C LTR MaLR 1 375 0 538 292 49 28 chr13 79266710 79266825 -22606344 + L1ME4a LINE L1 5715 5826 -295 1485 212 37 3 chr13 79266976 79267330 -22605839 - L1PA15 LINE L1 -1707 4439 4074 780 204 6 0 chr13 79267330 79267487 -22605682 + L1PA15 LINE L1 4457 4614 -1532 5328 123 31 8 chr13 79267487 79268581 -22604588 + L1PA15 LINE L1 5035 6148 -17 1345 196 3 53 chr13 79268781 79269082 -22604087 + AluJo SINE Alu 6 291 -21 22 56 0 0 chr13 79269122 79269158 -22604011 + AT_rich Low_complexity Low_complexity 1 36 0 343 191 30 29 chr13 79269291 79269401 -22603768 + L1MC5 LINE L1 7832 8042 0 272 400 0 9 chr13 79270009 79270114 -22603055 - L3 LINE CR1 -44 1533 1430 1482 203 39 80 chr13 79270138 79270625 -22602544 - MLT1C LTR MaLR 0 467 1 507 308 42 19 chr13 79270757 79270971 -22602198 - MIR SINE MIR -10 252 34 464 274 139 14 chr13 79270988 79271196 -22601973 - L3 LINE CR1 -191 1386 1153 654 195 11 81 chr13 79273001 79273186 -22599983 + MER5B DNA MER1_type 1 172 -6 2290 78 17 0 chr13 79273642 79273935 -22599234 + AluY SINE Alu 1 298 -13 22 35 0 0 chr13 79274058 79274087 -22599082 + AT_rich Low_complexity Low_complexity 1 29 0 423 0 0 0 chr13 79276394 79276441 -22596728 + (TG)n Simple_repeat Simple_repeat 2 48 0 1843 184 25 22 chr13 79276441 79276805 -22596364 - MLT1A1 LTR MaLR 0 365 1 412 209 12 12 chr13 79276808 79276894 -22596275 - MLT1A1 LTR MaLR -275 90 5 217 218 39 0 chr13 79276894 79276972 -22596197 + (TA)n Simple_repeat Simple_repeat 1 81 0 240 59 0 0 chr13 79278840 79278874 -22594295 + (CA)n Simple_repeat Simple_repeat 1 34 0 226 108 108 0 chr13 79278876 79278913 -22594256 - MLT2D LTR ERVL -7 390 350 206 337 0 11 chr13 79278913 79279002 -22594167 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 313 157 0 0 chr13 79279113 79279164 -22594005 - L2 LINE L2 -1 3312 3262 216 182 0 0 chr13 79279185 79279229 -22593940 + (CA)n Simple_repeat Simple_repeat 1 44 0 1512 197 90 3 chr13 79279248 79279583 -22593586 - MLT2D LTR ERVL -50 364 1 1931 150 0 0 chr13 79279700 79279987 -22593182 + AluSx SINE Alu 1 287 -25 637 167 210 49 chr13 79280621 79280783 -22592386 + MER58C DNA MER1_type 28 215 0 305 167 309 24 chr13 79281410 79281494 -22591675 - L2 LINE L2 -1 3312 3205 4065 191 23 47 chr13 79281873 79283137 -22590032 + L1MB2 LINE L1 5062 6299 -1 23 33 0 0 chr13 79283188 79283218 -22589951 + AT_rich Low_complexity Low_complexity 1 30 0 206 121 0 0 chr13 79283381 79283414 -22589755 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 958 195 103 0 chr13 79284062 79284257 -22588912 + MER20 DNA MER1_type 1 215 -4 2068 191 105 3 chr13 79284487 79285244 -22587925 + SATR1 Satellite Satellite 1 834 0 1596 224 77 20 chr13 79285275 79285825 -22587344 - SATR1 Satellite Satellite -92 581 1 2055 203 118 6 chr13 79285853 79286929 -22586240 - SATR1 Satellite Satellite -1 1196 1 2271 185 98 8 chr13 79286965 79287832 -22585337 - SATR1 Satellite Satellite 0 945 1 418 237 15 35 chr13 79287838 79288181 -22584988 + (TTA)n Simple_repeat Simple_repeat 1 335 0 2398 168 104 10 chr13 79288181 79290599 -22582570 + SATR1 Satellite Satellite 1 2645 -2 1986 190 98 30 chr13 79290628 79291471 -22581698 + SATR1 Satellite Satellite 1 900 -3 2067 246 105 45 chr13 79291505 79293438 -22579731 - SATR1 Satellite Satellite -8 2048 1 215 348 80 7 chr13 79293448 79293586 -22579583 + MIR SINE MIR 99 246 -16 300 317 83 29 chr13 79294540 79294745 -22578424 - L2 LINE L2 -453 2861 2646 1215 185 23 128 chr13 79294898 79295241 -22577928 - MLT2D LTR ERVL 0 520 119 1654 204 48 40 chr13 79295241 79295790 -22577379 + MLT2A2 LTR ERVL 1 554 0 562 190 16 0 chr13 79295790 79295911 -22577258 - MLT2D LTR ERVL -291 123 1 439 125 14 0 chr13 79295911 79295983 -22577186 - ERVL-D LTR ERVL -7 5757 5685 378 131 0 16 chr13 79295988 79296049 -22577120 - MSTD LTR MaLR -336 60 1 2569 239 36 12 chr13 79296137 79296694 -22576475 - ERVL-D LTR ERVL -4597 1167 625 1460 241 47 8 chr13 79296694 79297075 -22576094 + MSTD LTR MaLR 1 396 0 2569 239 36 12 chr13 79297075 79297584 -22575585 - ERVL-D LTR ERVL -5139 625 2 861 238 13 45 chr13 79297585 79297820 -22575349 - MLT2D LTR ERVL 0 414 226 288 183 0 67 chr13 79297816 79297876 -22575293 - MLT2D LTR ERVL -118 296 241 * 189 0 0 0 chr13 79298053 79298074 -22575095 + (T)n Simple_repeat Simple_repeat 1 21 0 1914 116 60 3 chr13 79298746 79299031 -22574138 + AluSx SINE Alu 1 301 -11 189 0 0 0 chr13 79299108 79299129 -22574040 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 275 334 132 48 chr13 79299359 79300231 -22572938 + L2 LINE L2 1712 2656 -658 242 361 0 0 chr13 79300531 79300592 -22572577 - L2 LINE L2 -27 3245 3185 2069 179 0 8 chr13 79301194 79301562 -22571607 + MLT1A1 LTR MaLR 1 365 0 582 210 69 5 chr13 79303286 79303438 -22569731 + Tigger3(Golem) DNA MER2_type 1 2867 -162 3829 204 29 50 chr13 79303529 79303956 -22569213 + MER21B LTR ERV1 12 413 -450 2282 33 3 33 chr13 79303956 79304259 -22568910 - L1PA4 LINE L1 0 6155 5862 3829 204 29 50 chr13 79304259 79304699 -22568470 + MER21B LTR ERV1 413 861 -2 27 0 0 0 chr13 79305679 79305706 -22567463 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr13 79305731 79305759 -22567410 + AT_rich Low_complexity Low_complexity 1 28 0 2688 225 86 25 chr13 79305974 79306258 -22566911 + Charlie5 DNA MER1_type 1 266 -2358 2173 163 74 20 chr13 79306258 79306662 -22566507 + MSTB LTR MaLR 1 426 0 2688 225 86 25 chr13 79306662 79306681 -22566488 + Charlie5 DNA MER1_type 266 282 -2342 1512 115 0 77 chr13 79306681 79306941 -22566228 - AluSg/x SINE Alu -6 306 67 2688 225 86 25 chr13 79306941 79307494 -22565675 + Charlie5 DNA MER1_type 282 911 -1713 1780 169 15 3 chr13 79307501 79307827 -22565342 + MER46B DNA MER2_type 31 235 -1 2158 180 64 69 chr13 79307828 79308065 -22565104 + Charlie5 DNA MER1_type 2016 2253 -371 1781 146 52 0 chr13 79308065 79308352 -22564817 - AluSx SINE Alu -10 302 1 2158 180 64 69 chr13 79308352 79308725 -22564444 + Charlie5 DNA MER1_type 2253 2623 -1 22 56 0 0 chr13 79308857 79308893 -22564276 + AT_rich Low_complexity Low_complexity 1 36 0 349 250 38 0 chr13 79309625 79309705 -22563464 - MIR3 SINE MIR -11 197 115 3430 114 10 4 chr13 79311395 79311902 -22561267 + MER9 LTR ERVK 2 511 0 1253 228 29 0 chr13 79312001 79312277 -22560892 - AluJo SINE Alu -28 284 1 909 223 18 20 chr13 79312685 79312952 -22560217 - MLT1B LTR MaLR -120 347 29 245 241 0 0 chr13 79314300 79314358 -22558811 - L1MC4 LINE L1 -1332 6710 6653 318 87 0 0 chr13 79315041 79315087 -22558082 + (T)n Simple_repeat Simple_repeat 1 46 0 2083 128 0 10 chr13 79315294 79315598 -22557571 + AluSg SINE Alu 1 301 -9 216 0 0 0 chr13 79315626 79315650 -22557519 + (A)n Simple_repeat Simple_repeat 1 24 0 2150 167 21 30 chr13 79315914 79316346 -22556823 - MSTA LTR MaLR 0 428 1 279 328 139 0 chr13 79317405 79317527 -22555642 + MER5A DNA MER1_type 1 139 -50 466 185 25 76 chr13 79317580 79317737 -22555432 - L1MA9 LINE L1 -41 6271 6123 266 342 86 13 chr13 79318320 79318472 -22554697 + MIR SINE MIR 26 188 -74 198 143 0 0 chr13 79318528 79318563 -22554606 + (TCTCCC)n Simple_repeat Simple_repeat 6 40 0 1400 162 76 86 chr13 79318971 79319274 -22553895 - AluJb SINE Alu -12 300 1 297 174 37 56 chr13 79319375 79319536 -22553633 + (TTATA)n Simple_repeat Simple_repeat 3 160 0 40 21 0 0 chr13 79319548 79319595 -22553574 + AT_rich Low_complexity Low_complexity 1 47 0 280 343 39 0 chr13 79319627 79319729 -22553440 + MIR3 SINE MIR 99 204 -4 2147 98 30 0 chr13 79320025 79320320 -22552849 - AluSg SINE Alu -6 304 1 22 0 0 0 chr13 79320660 79320682 -22552487 + AT_rich Low_complexity Low_complexity 1 22 0 1728 109 0 4 chr13 79321092 79321330 -22551839 + AluY SINE Alu 66 302 -9 1669 175 0 11 chr13 79321555 79321862 -22551307 - AluSx SINE Alu 0 304 1 1923 141 3 0 chr13 79321985 79322299 -22550870 - AluSx SINE Alu 0 315 1 408 290 23 0 chr13 79322818 79322949 -22550220 - MIR SINE MIR -12 250 117 2763 149 18 2 chr13 79322976 79323492 -22549677 + L1MA7 LINE L1 5274 5828 -343 2424 154 25 27 chr13 79323606 79324080 -22549089 + L1MA7 LINE L1 5815 6287 -4 207 0 0 0 chr13 79324120 79324143 -22549026 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1296 20 0 0 chr13 79324143 79324295 -22548874 - L1PA3 LINE L1 -8 6147 5996 25 75 0 0 chr13 79324403 79324456 -22548713 + AT_rich Low_complexity Low_complexity 1 53 0 5765 181 20 4 chr13 79325199 79328588 -22544581 - L1PA13 LINE L1 -12 7589 4025 2398 166 20 0 chr13 79328590 79328988 -22544181 - L1PA13 LINE L1 -7170 411 6 1488 155 7 4 chr13 79328995 79329266 -22543903 + L1 LINE L1 4612 4883 -1263 388 256 31 37 chr13 79329264 79329455 -22543714 - L1M4 LINE L1 -3111 3035 2846 * 3721 287 144 34 chr13 79329503 79329871 -22543298 - L2 LINE L2 -337 2977 2651 2601 165 14 0 chr13 79329871 79330289 -22542880 + MSTB LTR MaLR 3 426 0 3721 287 144 34 chr13 79330289 79331622 -22541547 - L2 LINE L2 -663 2651 1089 26 50 0 0 chr13 79332188 79332228 -22540941 + AT_rich Low_complexity Low_complexity 1 40 0 432 278 86 5 chr13 79333072 79333270 -22539899 - L1ME3A LINE L1 -222 5931 5718 365 273 145 28 chr13 79333400 79333873 -22539296 - L1ME3A LINE L1 -637 5512 4987 331 200 32 21 chr13 79334153 79334248 -22538921 - L1ME3A LINE L1 -1479 4650 4555 30 27 0 0 chr13 79334289 79334326 -22538843 + AT_rich Low_complexity Low_complexity 1 37 0 644 290 77 40 chr13 79334375 79335041 -22538128 - L1ME3A LINE L1 -3142 2987 2298 514 335 107 23 chr13 79335049 79335434 -22537735 - L1ME3A LINE L1 -5669 450 34 3308 63 14 0 chr13 79335709 79336137 -22537032 - L1PA8 LINE L1 -6 6166 5733 1363 86 11 32 chr13 79336137 79336389 -22536780 + L1P LINE L1 5177 5424 -743 1673 178 7 13 chr13 79336389 79336687 -22536482 - AluJo SINE Alu -16 296 1 1788 162 16 3 chr13 79336689 79336997 -22536172 - AluJo SINE Alu 0 312 1 45 75 0 0 chr13 79337434 79337528 -22535641 + AT_rich Low_complexity Low_complexity 1 94 0 484 277 43 53 chr13 79337711 79337736 -22535433 - L1ME LINE L1 -589 5575 5551 953 111 12 23 chr13 79337736 79337907 -22535262 - L1MA9 LINE L1 -5 6307 6139 484 277 43 53 chr13 79337907 79338346 -22534823 - L1ME LINE L1 -613 5551 5106 884 263 32 88 chr13 79338373 79338962 -22534207 - L1ME LINE L1 -2017 4129 3574 22 70 0 0 chr13 79339654 79339697 -22533472 + AT_rich Low_complexity Low_complexity 1 43 0 1824 95 3 102 chr13 79340037 79340341 -22532828 + AluSc SINE Alu 1 274 -35 927 288 79 23 chr13 79340544 79340898 -22532271 + MLT1J LTR MaLR 103 476 -35 2300 142 17 6 chr13 79341608 79341968 -22531201 + THE1B LTR MaLR 1 364 0 514 188 50 0 chr13 79342760 79342861 -22530308 - MIR SINE MIR -81 181 76 5928 46 47 3 chr13 79344579 79345339 -22527830 + L1PA6 LINE L1 5361 6154 0 287 356 57 93 chr13 79345448 79345922 -22527247 - L2 LINE L2 -9 3263 2807 606 212 24 4 chr13 79346362 79346579 -22526590 + MER89 LTR ERV1 1 321 -238 743 287 42 0 chr13 79347226 79347442 -22525727 - MIR SINE MIR -26 236 12 431 288 144 1 chr13 79347535 79347703 -22525466 - MIR SINE MIR -62 146 1 1842 130 42 79 chr13 79348960 79349338 -22523831 + THE1B LTR MaLR 1 364 0 198 0 0 0 chr13 79350753 79350775 -22522394 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 391 233 14 89 chr13 79350991 79351137 -22522032 + L2 LINE L2 3179 3313 0 354 292 26 52 chr13 79351747 79351901 -22521268 + L2 LINE L2 3163 3312 -1 24 0 0 0 chr13 79352303 79352327 -22520842 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 79352461 79352482 -22520687 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr13 79352548 79352583 -22520586 + (CA)n Simple_repeat Simple_repeat 1 35 0 1811 158 10 10 chr13 79352865 79353163 -22520006 - AluJo SINE Alu -14 298 1 911 203 147 23 chr13 79353489 79353755 -22519414 - MLT1C LTR MaLR 0 467 169 2518 173 19 32 chr13 79353804 79354337 -22518832 - L1MA9 LINE L1 0 6312 5787 3360 156 58 27 chr13 79354340 79355071 -22518098 - Tigger3(Golem) DNA MER2_type 0 3029 2277 425 277 0 36 chr13 79355061 79355173 -22517996 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2472 196 28 7 chr13 79355195 79356142 -22517027 - L1MA9 LINE L1 -548 5764 4948 720 200 38 32 chr13 79356142 79356327 -22516842 - MLT1C LTR MaLR -281 186 1 483 187 35 0 chr13 79356669 79356840 -22516329 + (TA)n Simple_repeat Simple_repeat 1 177 0 1198 251 119 43 chr13 79356843 79357333 -22515836 + MLT1G1 LTR MaLR 34 555 -35 * 1640 182 65 27 chr13 79357331 79357700 -22515469 + MLT1B LTR MaLR 8 390 0 344 259 24 0 chr13 79358393 79358478 -22514691 - MIR SINE MIR -105 157 71 28 29 0 0 chr13 79358607 79358642 -22514527 + AT_rich Low_complexity Low_complexity 1 35 0 1656 195 70 6 chr13 79358715 79359058 -22514111 - MLT1A1 LTR MaLR 0 365 1 2180 109 38 44 chr13 79359744 79360110 -22513059 - THE1B LTR MaLR 0 364 1 24 77 0 0 chr13 79362122 79362174 -22510995 + AT_rich Low_complexity Low_complexity 1 52 0 38 75 0 0 chr13 79362825 79362905 -22510264 + AT_rich Low_complexity Low_complexity 1 80 0 182 344 93 26 chr13 79363121 79363272 -22509897 + L2 LINE L2 2686 2846 -468 291 242 11 0 chr13 79363557 79363652 -22509517 + MER69 DNA AcHobo 2384 2479 -47 1342 160 0 10 chr13 79363832 79364059 -22509110 + AluJb SINE Alu 84 308 0 2281 93 3 0 chr13 79364102 79364392 -22508777 - AluSx SINE Alu -21 291 1 1820 196 67 53 chr13 79364454 79364863 -22508306 + L1MC3 LINE L1 7247 7666 -119 2151 119 20 0 chr13 79364863 79365165 -22508004 + AluSx SINE Alu 1 308 -4 1820 196 67 53 chr13 79365165 79365280 -22507889 + L1MC3 LINE L1 7666 7778 -7 2205 168 64 5 chr13 79365715 79366119 -22507050 + MSTA LTR MaLR 1 428 0 1702 267 55 21 chr13 79366394 79366967 -22506202 - MLT1G LTR MaLR 0 590 3 24 32 0 0 chr13 79367600 79367631 -22505538 + AT_rich Low_complexity Low_complexity 1 31 0 2743 244 52 54 chr13 79367725 79368944 -22504225 - L1MC4 LINE L1 -128 7914 6698 15960 216 30 14 chr13 79369343 79374678 -22498491 + L1PA15 LINE L1 1287 6763 -53 505 150 0 0 chr13 79374678 79374758 -22498411 - MADE1 DNA Mariner 0 80 1 15960 216 30 14 chr13 79374758 79374800 -22498369 + L1PA15 LINE L1 6763 6803 -13 2275 109 3 0 chr13 79375055 79375358 -22497811 - AluSc SINE Alu -5 304 1 24 91 0 0 chr13 79375433 79375499 -22497670 + AT_rich Low_complexity Low_complexity 1 66 0 404 283 120 52 chr13 79375514 79375839 -22497330 - L1ME3A LINE L1 -85 6085 5739 265 213 94 71 chr13 79375855 79375982 -22497187 - L1ME3A LINE L1 -522 5640 5511 * 348 194 0 0 chr13 79375980 79376042 -22497127 - L1MA10 LINE L1 -104 6230 6169 1196 151 13 111 chr13 79376198 79376496 -22496673 - L1MC1 LINE L1 -11 6322 6054 * 6241 172 73 29 chr13 79376471 79377807 -22495362 - L1MCa LINE L1 -5026 1400 7 289 315 130 10 chr13 79377803 79378111 -22495058 - L1 LINE L1 -1827 4319 3975 * 237 238 36 0 chr13 79378214 79378298 -22494871 - L1MEd LINE L1 -5257 862 776 1865 199 69 43 chr13 79379572 79380064 -22493105 - MLT1D LTR MaLR 0 505 1 214 231 77 0 chr13 79380743 79380795 -22492374 - MIR SINE MIR -73 189 134 307 286 38 60 chr13 79381593 79381660 -22491509 + MLT1J2 LTR MaLR 4 68 -382 1792 166 102 6 chr13 79381660 79381992 -22491177 - THE1B LTR MaLR 0 364 1 307 286 38 60 chr13 79381992 79382057 -22491112 + MLT1J2 LTR MaLR 68 133 -317 327 291 51 8 chr13 79382591 79382708 -22490461 + L2 LINE L2 3192 3313 0 237 239 45 15 chr13 79383623 79383690 -22489479 - L2 LINE L2 -1 3312 3244 199 320 0 0 chr13 79385433 79385483 -22487686 + L2 LINE L2 2579 2628 -686 1958 143 6 0 chr13 79385524 79385839 -22487330 + L1MB1 LINE L1 5851 6167 -1 345 284 35 43 chr13 79385859 79385975 -22487194 - L2 LINE L2 -2 3311 3197 549 249 29 23 chr13 79386134 79386307 -22486862 - LTR67 LTR ERVL -3 554 381 209 200 0 0 chr13 79386404 79386444 -22486725 + GA-rich Low_complexity Low_complexity 1 40 0 316 349 4 95 chr13 79386471 79386712 -22486457 - LTR67 LTR ERVL -335 222 4 289 346 129 74 chr13 79386735 79386921 -22486248 + L2 LINE L2 2870 3044 -228 945 237 51 19 chr13 79386921 79387136 -22486033 + MER58A DNA MER1_type 3 224 0 289 346 129 74 chr13 79387136 79387328 -22485841 + L2 LINE L2 3044 3269 -3 2141 125 0 3 chr13 79387743 79388039 -22485130 + AluSq SINE Alu 1 295 -18 1313 199 98 16 chr13 79388095 79388412 -22484757 - MER2 DNA MER2_type -1 343 1 264 228 250 16 chr13 79388531 79388715 -22484454 - MER112 DNA MER1_type -17 243 17 209 269 295 0 chr13 79388951 79389029 -22484140 + MER5A DNA MER1_type 86 186 -3 2194 134 5 47 chr13 79389211 79389591 -22483578 + THE1B LTR MaLR 1 364 0 11716 89 11 4 chr13 79389593 79391160 -22482009 + THE1B-int LTR MaLR 3 1580 0 2385 124 5 27 chr13 79391160 79391532 -22481637 + THE1B LTR MaLR 1 364 0 1094 206 121 126 chr13 79391622 79392034 -22481135 + MLT2B1 LTR ERVL 5 414 0 250 303 82 0 chr13 79392110 79392232 -22480937 + L1MEc LINE L1 251 382 -6014 * 453 246 36 0 chr13 79392225 79392335 -22480834 + L1MEc LINE L1 1730 1843 -4553 2058 132 14 173 chr13 79392340 79392826 -22480343 - LTR32 LTR ERVL 0 471 63 1217 182 85 28 chr13 79393140 79393504 -22479665 - MSTC LTR MaLR -3 425 3 1606 173 0 34 chr13 79393715 79394010 -22479159 + AluJb SINE Alu 3 287 -25 2101 252 10 7 chr13 79394034 79394629 -22478540 - L1 LINE L1 -2989 3157 2561 1721 206 46 10 chr13 79394629 79395042 -22478127 + L1PB4 LINE L1 3477 3904 -2242 5779 186 12 15 chr13 79395044 79395977 -22477192 + L1PB4 LINE L1 4099 5033 -1123 1499 194 13 27 chr13 79395977 79396276 -22476893 + AluJb SINE Alu 1 295 -17 5779 186 12 15 chr13 79396276 79397402 -22475767 + L1PB4 LINE L1 5033 6154 -2 42 36 0 0 chr13 79397471 79397527 -22475642 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 79397967 79397991 -22475178 + AT_rich Low_complexity Low_complexity 1 24 0 567 236 97 68 chr13 79398216 79398525 -22474644 - LTR37A LTR ERV1 -15 411 94 22 0 0 0 chr13 79398625 79398647 -22474522 + AT_rich Low_complexity Low_complexity 1 22 0 347 168 158 0 chr13 79399261 79399362 -22473807 - LTR37A LTR ERV1 -3 423 307 3966 95 65 5 chr13 79399368 79399957 -22473212 - L1PB1 LINE L1 -3 6148 5525 222 132 29 15 chr13 79400002 79400070 -22473099 + (TA)n Simple_repeat Simple_repeat 1 69 0 457 243 34 40 chr13 79400324 79400501 -22472668 - LTR37A LTR ERV1 -233 193 18 2142 115 0 3 chr13 79401067 79401363 -22471806 - AluSx SINE Alu -17 295 1 237 65 0 0 chr13 79401621 79401652 -22471517 + (TTG)n Simple_repeat Simple_repeat 2 32 0 262 302 178 24 chr13 79402567 79402736 -22470433 - MER117 DNA MER1_type -2 195 1 6093 46 30 3 chr13 79402893 79403652 -22469517 + LTR17 LTR ERV1 1 780 0 2266 177 85 8 chr13 79405448 79405917 -22467252 - MLT1D LTR MaLR 0 505 1 292 219 37 12 chr13 79406391 79406473 -22466696 + L1ME3A LINE L1 6073 6156 -14 193 325 121 25 chr13 79406574 79406731 -22466438 - MIR SINE MIR -16 246 75 6879 159 46 9 chr13 79406831 79407095 -22466074 + L1MA8 LINE L1 3971 4224 -2067 378 0 0 0 chr13 79407095 79407137 -22466032 + (CA)n Simple_repeat Simple_repeat 1 42 0 6879 159 46 9 chr13 79407137 79409101 -22464068 + L1MA8 LINE L1 4224 6288 -3 25 51 0 0 chr13 79409335 79409374 -22463795 + AT_rich Low_complexity Low_complexity 1 39 0 2395 94 0 0 chr13 79409484 79409793 -22463376 + AluY SINE Alu 1 309 -2 21 57 0 0 chr13 79410196 79410231 -22462938 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 79410375 79410400 -22462769 + AT_rich Low_complexity Low_complexity 1 25 0 198 288 38 25 chr13 79410429 79410509 -22462660 + L2 LINE L2 3191 3271 -42 198 214 0 24 chr13 79410481 79410523 -22462646 - L2 LINE L2 -2497 817 777 234 218 36 0 chr13 79410596 79410651 -22462518 - MER115 DNA AcHobo 0 693 637 233 242 152 0 chr13 79411177 79411276 -22461893 - Charlie8 DNA MER1_type -2292 125 12 1666 114 141 8 chr13 79411712 79411975 -22461194 - AluSg1 SINE Alu -10 299 2 1030 92 8 0 chr13 79411980 79412110 -22461059 - AluSg1 SINE Alu -178 131 1 2355 110 0 0 chr13 79415466 79415767 -22457402 - AluSg SINE Alu -9 301 1 22 0 0 0 chr13 79416263 79416285 -22456884 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 79417145 79417166 -22456003 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr13 79417228 79417273 -22455896 + AT_rich Low_complexity Low_complexity 1 45 0 1375 183 117 0 chr13 79417274 79417531 -22455638 - AluJb SINE Alu -25 287 1 385 281 98 6 chr13 79419110 79419274 -22453895 - MLT1L LTR MaLR 0 615 437 189 0 0 0 chr13 79419395 79419416 -22453753 + (T)n Simple_repeat Simple_repeat 1 21 0 1842 171 3 3 chr13 79419808 79420118 -22453051 - AluSx SINE Alu -1 311 2 2504 52 3 0 chr13 79420263 79420572 -22452597 - AluY SINE Alu -1 310 1 2313 91 3 0 chr13 79420572 79420868 -22452301 - AluSp SINE Alu -16 297 1 290 78 0 20 chr13 79421863 79421914 -22451255 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr13 79424519 79424547 -22448622 + GC_rich Low_complexity Low_complexity 1 28 0 604 349 44 27 chr13 79426761 79427059 -22446110 - L3b LINE CR1 -8 1575 1273 608 324 25 37 chr13 79427365 79427609 -22445560 - MIR SINE MIR -5 257 17 954 71 0 0 chr13 79427689 79427816 -22445353 + (TA)n Simple_repeat Simple_repeat 2 128 0 283 301 0 0 chr13 79429815 79429888 -22443281 - L2 LINE L2 -1 3312 3240 1225 229 65 52 chr13 79430243 79430767 -22442402 + LTR55 LTR ERV 16 546 -2 238 301 277 15 chr13 79430769 79430975 -22442194 - L2 LINE L2 -531 2783 2524 180 77 0 0 chr13 79431038 79431064 -22442105 + (TG)n Simple_repeat Simple_repeat 1 26 0 301 102 34 0 chr13 79431064 79431123 -22442046 + GA-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr13 79432019 79432040 -22441129 + AT_rich Low_complexity Low_complexity 1 21 0 422 312 96 28 chr13 79432115 79432509 -22440660 - MLT1L LTR MaLR 0 615 195 12341 222 24 30 chr13 79432609 79432800 -22440369 - L1PB3 LINE L1 0 6856 6665 2089 169 15 0 chr13 79432800 79433132 -22440037 + MER1B DNA MER1_type 1 337 0 12341 222 24 30 chr13 79433132 79439124 -22434045 - L1PB3 LINE L1 -191 6665 650 717 268 0 0 chr13 79439125 79439304 -22433865 - L1PBa LINE L1 -5257 1606 1428 266 360 38 56 chr13 79439272 79439806 -22433363 - L1PB3 LINE L1 -6320 529 6 * 1132 297 73 51 chr13 79439797 79441306 -22431863 - L1PBa LINE L1 -5420 1428 -12 383 235 76 25 chr13 79441445 79441564 -22431605 + MER63 DNA MER1_type 1 751 -85 255 143 0 0 chr13 79441565 79441607 -22431562 + MER63 DNA MER1_type 977 1018 -42 236 154 19 0 chr13 79441705 79441757 -22431412 + CT-rich Low_complexity Low_complexity 3 55 0 932 174 16 33 chr13 79441811 79441995 -22431174 - MER5A DNA MER1_type 0 189 9 26 30 0 0 chr13 79442862 79442895 -22430274 + AT_rich Low_complexity Low_complexity 1 33 0 1684 83 35 4 chr13 79442967 79443195 -22429974 + AluY SINE Alu 75 309 -2 439 293 128 16 chr13 79446433 79446621 -22426548 + MIR SINE MIR 49 257 -5 2121 124 41 36 chr13 79447199 79447561 -22425608 - THE1B LTR MaLR 0 364 1 980 204 16 0 chr13 79448419 79448605 -22424564 - MER5A DNA MER1_type 0 189 1 225 175 25 0 chr13 79449107 79449147 -22424022 + L2 LINE L2 3258 3298 -15 1725 161 17 30 chr13 79450424 79450722 -22422447 + AluJo SINE Alu 6 299 -13 21 0 0 0 chr13 79450776 79450797 -22422372 + AT_rich Low_complexity Low_complexity 1 21 0 859 204 41 0 chr13 79451580 79451800 -22421369 - L1MA4 LINE L1 -2 6298 6070 1641 145 3 107 chr13 79452229 79452567 -22420602 + AluSq SINE Alu 1 303 -10 1808 194 25 29 chr13 79452917 79453361 -22419808 - L1MA9 LINE L1 -87 6225 5784 3235 155 52 27 chr13 79453361 79454096 -22419073 - Tigger3(Golem) DNA MER2_type 0 3029 2277 3012 193 26 86 chr13 79456186 79456910 -22416259 - MER54B LTR ERVL -112 681 1 515 219 0 55 chr13 79456910 79457038 -22416131 - MER57-int LTR ERV1 -689 6848 6728 3215 56 32 1 chr13 79457894 79458348 -22414821 + LTR10C LTR ERV1 57 591 0 341 260 53 20 chr13 79458348 79458498 -22414671 + HERVI LTR ERV1 2 156 -7629 342 202 140 0 chr13 79459443 79459557 -22413612 + L1MCa LINE L1 1371 1500 -4926 2070 129 156 8 chr13 79459737 79460110 -22413059 + MSTA LTR MaLR 1 428 0 1085 189 20 16 chr13 79460110 79460364 -22412805 + MSTA-int LTR MaLR 1 255 -1396 401 246 0 32 chr13 79460365 79460491 -22412678 + AluSp SINE Alu 1 122 -191 2052 136 0 10 chr13 79461019 79461320 -22411849 + AluJb SINE Alu 1 298 -14 180 0 0 0 chr13 79462886 79462906 -22410263 + (A)n Simple_repeat Simple_repeat 1 20 0 1489 198 21 10 chr13 79463739 79464027 -22409142 + AluJo SINE Alu 1 291 -21 560 247 119 53 chr13 79464275 79464502 -22408667 - MIR SINE MIR -10 252 11 615 292 66 81 chr13 79464791 79465319 -22407850 + LTR67 LTR ERVL 33 552 -5 1700 169 0 37 chr13 79465377 79465672 -22407497 + AluJo SINE Alu 5 288 -24 21 36 0 0 chr13 79466498 79466526 -22406643 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chr13 79468642 79468684 -22404485 + (CA)n Simple_repeat Simple_repeat 2 43 0 242 288 38 56 chr13 79469327 79469487 -22403682 - L1MC/D LINE L1 -1888 5920 5764 2115 160 16 11 chr13 79469487 79469856 -22403313 - MER41E LTR ERV1 0 512 142 1429 206 14 20 chr13 79470097 79470393 -22402776 + AluJo SINE Alu 1 294 -18 5287 164 24 22 chr13 79471614 79473388 -22399781 - L1MA4 LINE L1 -192 6108 4330 1804 160 3 20 chr13 79473388 79473694 -22399475 - AluJb SINE Alu -11 301 1 5287 164 24 22 chr13 79473694 79473817 -22399352 - L1MA4 LINE L1 -1970 4330 4209 399 274 112 44 chr13 79473919 79474314 -22398855 - L1MC/D LINE L1 -1175 4971 4534 1946 155 0 13 chr13 79474314 79474623 -22398546 - AluSx SINE Alu -7 305 1 399 274 112 44 chr13 79474623 79474726 -22398443 - L1MC/D LINE L1 -1612 4534 4439 421 389 6 6 chr13 79475230 79475410 -22397759 - MIR SINE MIR -71 191 12 194 259 0 37 chr13 79475805 79475859 -22397310 + L2 LINE L2 3216 3267 -5 746 281 37 49 chr13 79477241 79477487 -22395682 - MIR SINE MIR -5 257 15 2123 104 44 0 chr13 79478125 79478422 -22394747 - AluSg SINE Alu 0 310 1 1701 186 52 31 chr13 79479810 79480192 -22392977 - MLT1B LTR MaLR 0 390 1 180 0 0 0 chr13 79480201 79480221 -22392948 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2330 47 0 0 chr13 79480227 79480501 -22392668 - AluY SINE Alu -36 275 2 342 0 0 0 chr13 79480787 79480825 -22392344 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 348 24 0 0 chr13 79480824 79480865 -22392304 + (TG)n Simple_repeat Simple_repeat 1 41 0 392 294 28 36 chr13 79481531 79481743 -22391426 + MIR SINE MIR 24 229 -33 1224 190 16 0 chr13 79482593 79482835 -22390334 - L1MB2 LINE L1 -2 6169 5924 776 223 10 20 chr13 79483104 79483306 -22389863 + L1MA9 LINE L1 6083 6282 -30 694 182 66 33 chr13 79483470 79483651 -22389518 - MER5A DNA MER1_type -2 187 1 1815 142 62 22 chr13 79485037 79485361 -22387808 - MER1B DNA MER1_type 0 337 1 182 300 33 78 chr13 79485384 79485474 -22387695 - MIR SINE MIR -148 114 29 659 185 0 16 chr13 79485571 79485701 -22387468 - MLT1A1 LTR MaLR -50 340 192 1925 155 3 10 chr13 79485860 79486169 -22387000 + AluSx SINE Alu 1 307 -5 390 273 15 0 chr13 79487015 79487147 -22386022 - HAL1 LINE L1 -82 2425 2292 390 273 15 0 chr13 79487176 79487308 -22385861 - HAL1 LINE L1 -82 2425 2292 589 284 52 0 chr13 79487337 79487548 -22385621 - HAL1 LINE L1 -82 2425 2204 190 286 0 0 chr13 79487692 79487734 -22385435 - L2 LINE L2 -1893 1421 1380 452 311 77 89 chr13 79489024 79489451 -22383718 - L2 LINE L2 -1 3271 2850 456 19 0 0 chr13 79489945 79489998 -22383171 + (TG)n Simple_repeat Simple_repeat 2 54 0 1931 145 48 9 chr13 79490358 79490689 -22382480 - THE1C LTR MaLR 0 375 32 1526 164 38 49 chr13 79491179 79491544 -22381625 + MER46B DNA MER2_type 1 236 0 23 33 0 0 chr13 79492467 79492497 -22380672 + AT_rich Low_complexity Low_complexity 1 30 0 200 284 11 11 chr13 79493849 79493944 -22379225 + (TA)n Simple_repeat Simple_repeat 1 95 0 1279 153 28 9 chr13 79497313 79497528 -22375641 - AluJb SINE Alu -11 301 83 276 339 69 46 chr13 79498293 79498423 -22374746 + L2 LINE L2 3129 3261 -11 203 339 65 16 chr13 79498874 79498998 -22374171 - L2 LINE L2 -32 3240 3111 295 349 56 0 chr13 79499114 79499240 -22373929 + L2 LINE L2 2243 2375 -939 1298 193 6 66 chr13 79499318 79499650 -22373519 + AluJb SINE Alu 1 312 0 476 167 33 0 chr13 79499670 79499760 -22373409 - MLT1A1 LTR MaLR -25 349 257 224 29 0 29 chr13 79499796 79499830 -22373339 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1707 72 81 5 chr13 79499841 79500064 -22373105 - AluY SINE Alu -25 286 47 1374 130 102 20 chr13 79500069 79500315 -22372854 - AluSg SINE Alu -44 266 1 570 210 87 22 chr13 79500325 79500463 -22372706 - MLT1A1 LTR MaLR -218 147 1 442 366 79 24 chr13 79500463 79500755 -22372414 + L2 LINE L2 2380 2687 -627 938 126 157 0 chr13 79501614 79501773 -22371396 + L1PA10 LINE L1 5970 6153 -15 849 174 82 22 chr13 79501798 79501982 -22371187 + AluJo SINE Alu 118 312 0 195 95 119 0 chr13 79502002 79502044 -22371125 + L2 LINE L2 3005 3051 -221 218 361 49 28 chr13 79502296 79502440 -22370729 - MIR3 SINE MIR -13 195 49 1552 185 0 41 chr13 79502759 79503073 -22370096 - AluJo SINE Alu -7 305 5 244 289 67 0 chr13 79503895 79503985 -22369184 + MIR SINE MIR 157 252 -10 2551 57 0 0 chr13 79504696 79504997 -22368172 + AluY SINE Alu 1 301 -10 2147 124 3 0 chr13 79505067 79505366 -22367803 + AluSp SINE Alu 1 300 -13 21 0 0 0 chr13 79506336 79506357 -22366812 + AT_rich Low_complexity Low_complexity 1 21 0 1084 269 23 10 chr13 79507279 79507584 -22365585 + MER93a LTR ERV1 94 402 0 457 308 146 5 chr13 79507584 79507769 -22365400 + MIR SINE MIR 52 262 0 198 232 172 30 chr13 79507873 79507972 -22365197 - L2 LINE L2 -2643 671 559 2270 92 17 0 chr13 79508202 79508495 -22364674 - AluSg SINE Alu -12 298 1 654 197 58 72 chr13 79508931 79509139 -22364030 - MER31B LTR ERV1 -9 457 253 298 248 8 107 chr13 79509519 79509592 -22363577 + MER5B DNA MER1_type 67 125 -53 207 0 0 0 chr13 79509592 79509615 -22363554 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 298 248 8 107 chr13 79509615 79509662 -22363507 + MER5B DNA MER1_type 125 175 -3 23 54 0 0 chr13 79511820 79511857 -22361312 + AT_rich Low_complexity Low_complexity 1 37 0 819 144 139 5 chr13 79512085 79512287 -22360882 + L1MA8 LINE L1 6061 6289 -2 2469 54 0 3 chr13 79512331 79512625 -22360544 + AluY SINE Alu 1 293 -18 638 171 9 9 chr13 79512814 79512925 -22360244 - MER41E LTR ERV1 -401 111 1 180 0 0 0 chr13 79512970 79512990 -22360179 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2125 130 0 6 chr13 79512993 79513308 -22359861 - AluSq SINE Alu 0 313 1 502 286 62 29 chr13 79513373 79513583 -22359586 - L1MC/D LINE L1 -2059 5749 5533 1237 161 75 119 chr13 79513911 79514065 -22359104 + MER2 DNA MER2_type 1 160 -184 1491 192 47 4 chr13 79514065 79514341 -22358828 - AluJo SINE Alu -24 288 1 1237 161 75 119 chr13 79514341 79514546 -22358623 + MER2 DNA MER2_type 160 344 0 1806 174 20 8 chr13 79514960 79515316 -22357853 + MER46B DNA MER2_type 1 235 -1 304 288 0 0 chr13 79515356 79515422 -22357747 - MER63 DNA MER1_type 0 1061 996 237 108 0 0 chr13 79515424 79515461 -22357708 + (T)n Simple_repeat Simple_repeat 1 37 0 405 252 122 0 chr13 79515582 79515689 -22357480 - MER63 DNA MER1_type -90 746 1 253 240 0 0 chr13 79516966 79517016 -22356153 + MLT1H1 LTR MaLR 154 203 -352 186 380 20 0 chr13 79517097 79517197 -22355972 - L3b LINE CR1 -316 1267 1166 30 27 0 0 chr13 79518694 79518731 -22354438 + AT_rich Low_complexity Low_complexity 1 37 0 1425 142 131 18 chr13 79519287 79519562 -22353607 + AluSg1 SINE Alu 1 306 -3 1407 196 45 11 chr13 79519624 79519910 -22353259 + AluJo SINE Alu 1 296 -16 294 230 23 0 chr13 79519985 79520072 -22353097 + (TA)n Simple_repeat Simple_repeat 2 90 0 252 0 0 0 chr13 79522136 79522164 -22351005 + (TA)n Simple_repeat Simple_repeat 1 28 0 2638 34 0 0 chr13 79523020 79523316 -22349853 + AluY SINE Alu 1 296 -15 379 351 92 32 chr13 79525632 79525948 -22347221 - L3 LINE CR1 -112 1465 1131 338 305 43 28 chr13 79526025 79526166 -22347003 + L2 LINE L2 3169 3311 -2 2598 45 3 0 chr13 79526631 79526941 -22346228 - AluY SINE Alu 0 311 1 289 304 262 20 chr13 79526952 79527364 -22345805 - L2 LINE L2 -21 3292 2782 5708 90 29 2 chr13 79527398 79528519 -22344650 - L1PB2 LINE L1 0 6151 4980 497 150 0 0 chr13 79528519 79528599 -22344570 - AluY SINE Alu -7 302 223 1085 103 0 7 chr13 79528599 79528745 -22344424 - AluY SINE Alu -135 176 32 348 312 10 50 chr13 79528837 79528859 -22344310 - L2 LINE L2 -665 2649 2628 2494 116 11 6 chr13 79528859 79529221 -22343948 - THE1B LTR MaLR 0 364 1 348 312 10 50 chr13 79529221 79529397 -22343772 - L2 LINE L2 -686 2628 2459 466 295 79 21 chr13 79531772 79531962 -22341207 + MIR SINE MIR 32 232 -30 210 293 0 0 chr13 79531965 79532023 -22341146 + (TTG)n Simple_repeat Simple_repeat 3 60 0 23 0 0 0 chr13 79532119 79532142 -22341027 + AT_rich Low_complexity Low_complexity 1 23 0 227 220 33 77 chr13 79536625 79536716 -22336453 - MIR SINE MIR -74 188 102 2194 123 3 0 chr13 79536768 79537069 -22336100 + AluSx SINE Alu 1 302 -10 1752 128 7 13 chr13 79538036 79538342 -22334827 + L1MA5A LINE L1 5982 6285 -12 803 207 6 22 chr13 79538685 79538864 -22334305 + L1MB5 LINE L1 5989 6164 -10 26 50 0 0 chr13 79538902 79538942 -22334227 + AT_rich Low_complexity Low_complexity 1 40 0 840 316 112 41 chr13 79539129 79540055 -22333114 - L2 LINE L2 -301 3012 2021 2395 57 0 45 chr13 79540965 79541279 -22331890 - AluY SINE Alu -11 300 1 225 342 36 18 chr13 79541990 79542101 -22331068 - L2 LINE L2 -189 3083 2971 261 315 66 70 chr13 79542258 79542773 -22330396 - L2 LINE L2 -568 2746 2234 1437 185 74 4 chr13 79544179 79544449 -22328720 + AluJo SINE Alu 1 289 -23 1617 176 28 0 chr13 79544681 79544970 -22328199 + AluJo SINE Alu 1 297 -15 758 283 57 0 chr13 79544975 79545187 -22327982 - MIR SINE MIR -10 252 29 1679 166 52 0 chr13 79545591 79545881 -22327288 - AluJb SINE Alu -7 305 1 317 228 63 0 chr13 79545960 79546039 -22327130 + MIR SINE MIR 75 158 -104 21 71 0 0 chr13 79546099 79546141 -22327028 + AT_rich Low_complexity Low_complexity 1 42 0 27 0 0 0 chr13 79549290 79549317 -22323852 + AT_rich Low_complexity Low_complexity 1 27 0 195 139 0 0 chr13 79549708 79549744 -22323425 + (T)n Simple_repeat Simple_repeat 1 36 0 7495 25 14 9 chr13 79549746 79550710 -22322459 - L1PA3 LINE L1 0 6155 5190 2332 101 0 0 chr13 79550853 79551159 -22322010 - AluSc SINE Alu -3 306 1 1818 138 44 4 chr13 79551230 79551505 -22321664 - AluSx SINE Alu -26 286 1 441 268 0 0 chr13 79552608 79552720 -22320449 - MER94 DNA DNA -18 116 5 395 327 54 18 chr13 79553336 79553614 -22319555 + MER20B DNA MER1_type 191 478 -305 397 323 27 27 chr13 79553953 79554139 -22319030 - L3 LINE CR1 -162 1415 1230 213 304 61 83 chr13 79554218 79554399 -22318770 - L3 LINE CR1 -564 1013 837 22 0 0 0 chr13 79555220 79555242 -22317927 + AT_rich Low_complexity Low_complexity 1 22 0 1080 194 0 0 chr13 79556423 79556593 -22316576 - FAM SINE Alu -5 170 1 405 0 0 0 chr13 79557475 79557520 -22315649 + (TG)n Simple_repeat Simple_repeat 1 45 0 23 54 0 0 chr13 79558360 79558397 -22314772 + AT_rich Low_complexity Low_complexity 1 37 0 302 326 52 15 chr13 79561219 79561354 -22311815 + HAL1 LINE L1 1 140 -2367 630 262 196 80 chr13 79561685 79562681 -22310488 + HAL1 LINE L1 423 1533 -974 * 660 258 169 10 chr13 79562680 79562975 -22310194 + HAL1 LINE L1 1812 2153 -354 23 0 0 0 chr13 79563112 79563135 -22310034 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 79563389 79563412 -22309757 + AT_rich Low_complexity Low_complexity 1 23 0 203 325 38 0 chr13 79564336 79564416 -22308753 - MIR3 SINE MIR 0 208 126 195 244 0 0 chr13 79564671 79564716 -22308453 - MER5C DNA MER1_type 0 324 280 382 249 172 6 chr13 79564747 79564916 -22308253 - MER5C DNA MER1_type -40 284 88 1541 76 80 0 chr13 79564926 79565150 -22308019 - L1PA13 LINE L1 -19 6144 5903 2454 73 0 13 chr13 79565186 79565501 -22307668 - AluSq SINE Alu -2 311 1 1251 55 0 6 chr13 79565550 79565715 -22307454 - L1PA7 LINE L1 0 6154 5991 188 67 33 0 chr13 79566176 79566206 -22306963 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 4689 91 38 3 chr13 79566606 79567296 -22305873 + L1MA2 LINE L1 5547 6260 -44 306 222 0 0 chr13 79567311 79567374 -22305795 - L1MC4 LINE L1 -1339 6703 6641 28 0 0 0 chr13 79567423 79567451 -22305718 + AT_rich Low_complexity Low_complexity 1 28 0 688 197 14 0 chr13 79568350 79568492 -22304677 + L1PB4 LINE L1 6012 6155 -1 259 333 147 0 chr13 79568683 79568785 -22304384 - L2 LINE L2 -1 3271 3155 432 221 166 6 chr13 79568996 79569153 -22304016 - MER5A DNA MER1_type 0 189 4 210 71 0 0 chr13 79569203 79569231 -22303938 + (CA)n Simple_repeat Simple_repeat 2 29 0 30 0 0 0 chr13 79570504 79570534 -22302635 + AT_rich Low_complexity Low_complexity 1 30 0 573 270 85 42 chr13 79570705 79570964 -22302205 - L2 LINE L2 -24 3289 3020 451 280 84 33 chr13 79571369 79571583 -22301586 + MIR SINE MIR 13 237 -25 2773 71 3 3 chr13 79572057 79572422 -22300747 + L1PA8 LINE L1 5805 6169 -3 1228 245 103 32 chr13 79572499 79572921 -22300248 + MLT1C LTR MaLR 19 467 0 29 28 0 0 chr13 79573755 79573791 -22299378 + AT_rich Low_complexity Low_complexity 1 36 0 525 319 103 40 chr13 79573994 79574709 -22298460 + L2 LINE L2 2538 3312 -1 1661 183 0 17 chr13 79576061 79576356 -22296813 + AluJb SINE Alu 1 290 -22 21 0 0 0 chr13 79577538 79577559 -22295610 + AT_rich Low_complexity Low_complexity 1 21 0 409 344 48 21 chr13 79577769 79577958 -22295211 + MIR3 SINE MIR 4 197 -11 376 167 0 0 chr13 79580565 79580619 -22292550 + FRAM/FAM SINE Alu 23 76 -99 252 234 0 0 chr13 79580615 79580662 -22292507 + MER20B DNA MER1_type 15 61 -722 * 386 243 107 12 chr13 79580717 79580751 -22292418 + MER20B DNA MER1_type 597 626 -157 2060 118 7 0 chr13 79580751 79581047 -22292122 - AluSq SINE Alu -15 298 1 386 243 107 12 chr13 79581047 79581181 -22291988 + MER20B DNA MER1_type 626 781 -2 21 0 0 0 chr13 79582805 79582826 -22290343 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 79583807 79583835 -22289334 + AT_rich Low_complexity Low_complexity 1 28 0 252 261 61 18 chr13 79585599 79585710 -22287459 + MER5A DNA MER1_type 39 165 -24 180 185 111 19 chr13 79587250 79587304 -22285865 - MIR SINE MIR -116 92 34 433 270 76 47 chr13 79587992 79588203 -22284966 + L2 LINE L2 3060 3276 -37 379 268 142 0 chr13 79589152 79589279 -22283890 + MLT1L LTR MaLR 449 593 -22 21 0 0 0 chr13 79589573 79589594 -22283575 + AT_rich Low_complexity Low_complexity 1 21 0 2272 86 0 30 chr13 79590005 79590309 -22282860 + AluY SINE Alu 2 296 -15 230 160 20 0 chr13 79590354 79590404 -22282765 + (TATG)n Simple_repeat Simple_repeat 2 52 0 281 115 0 16 chr13 79593861 79593922 -22279247 + (TA)n Simple_repeat Simple_repeat 2 61 0 255 31 0 0 chr13 79593922 79593954 -22279215 + (GA)n Simple_repeat Simple_repeat 2 33 0 1800 140 0 25 chr13 79593954 79594232 -22278937 - AluSg SINE Alu -39 271 1 189 0 0 0 chr13 79594421 79594442 -22278727 + (TC)n Simple_repeat Simple_repeat 2 22 0 197 327 0 0 chr13 79594693 79594748 -22278421 + L2 LINE L2 3209 3263 -9 243 0 0 0 chr13 79595582 79595609 -22277560 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2188 99 0 17 chr13 79597070 79597395 -22275774 + AluSg SINE Alu 1 320 0 675 290 13 38 chr13 79597405 79597643 -22275526 + MIR SINE MIR 31 262 0 1337 219 93 21 chr13 79597828 79597975 -22275194 - L1M4 LINE L1 -435 5739 5604 330 175 0 0 chr13 79597975 79598038 -22275131 - L1MB8 LINE L1 -6 6172 6110 1337 219 93 21 chr13 79598038 79598316 -22274853 - L1M4 LINE L1 -570 5604 5280 199 176 0 0 chr13 79598418 79598452 -22274717 - L2 LINE L2 -25 3247 3214 377 352 113 30 chr13 79599425 79599655 -22273514 - MIR SINE MIR 0 262 14 309 89 0 0 chr13 79599841 79599886 -22273283 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 342 17 0 chr13 79600124 79600244 -22272925 + L2 LINE L2 3150 3271 -1 21 0 0 0 chr13 79600306 79600327 -22272842 + AT_rich Low_complexity Low_complexity 1 21 0 216 97 0 0 chr13 79601020 79601051 -22272118 + (TTTCC)n Simple_repeat Simple_repeat 4 34 0 261 292 90 35 chr13 79601080 79601224 -22271945 - L2 LINE L2 -7 3306 3155 1555 148 58 16 chr13 79601228 79601539 -22271630 + L1MA2 LINE L1 5981 6304 0 314 264 39 101 chr13 79601797 79601950 -22271219 + L2 LINE L2 3079 3217 -96 306 0 0 0 chr13 79601950 79601984 -22271185 + (TG)n Simple_repeat Simple_repeat 2 35 0 314 264 39 101 chr13 79601984 79602038 -22271131 + L2 LINE L2 3217 3273 -40 180 0 0 0 chr13 79602475 79602495 -22270674 + (T)n Simple_repeat Simple_repeat 1 20 0 463 322 88 9 chr13 79602696 79602923 -22270246 - MIR SINE MIR -6 256 12 290 274 0 0 chr13 79603199 79603272 -22269897 + MIR3 SINE MIR 125 197 -11 22 0 0 0 chr13 79603727 79603749 -22269420 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr13 79605251 79605302 -22267867 + AT_rich Low_complexity Low_complexity 1 51 0 225 347 74 8 chr13 79606182 79606303 -22266866 + MIR3 SINE MIR 74 202 -6 334 249 172 48 chr13 79606533 79606742 -22266427 - MLT1H1 LTR MaLR 0 549 322 656 267 29 12 chr13 79606805 79606977 -22266192 - MLT1H1 LTR MaLR -380 175 1 482 209 0 0 chr13 79607051 79607142 -22266027 - MER117 DNA MER1_type -102 95 5 933 223 75 127 chr13 79607466 79608159 -22265010 + L1MC4 LINE L1 7362 8031 -11 193 261 100 39 chr13 79608513 79608643 -22264526 + MIR SINE MIR 50 187 -75 253 279 0 0 chr13 79610461 79610522 -22262647 - MIR SINE MIR -4 258 198 2083 136 0 7 chr13 79612503 79612812 -22260357 + AluSx SINE Alu 3 309 -3 2063 145 0 3 chr13 79613156 79613460 -22259709 + AluSx SINE Alu 1 303 -9 316 327 96 0 chr13 79615262 79615366 -22257803 + L2 LINE L2 3159 3272 0 538 280 140 14 chr13 79615841 79616048 -22257121 + MIR SINE MIR 1 233 -29 284 271 90 11 chr13 79616453 79616630 -22256539 - L1ME LINE L1 -639 5482 5292 481 280 26 31 chr13 79617163 79617182 -22255987 - MIR SINE MIR -55 207 189 2183 126 0 8 chr13 79617182 79617538 -22255631 - L1MA2 LINE L1 0 6304 5952 481 280 26 31 chr13 79617538 79617714 -22255455 - MIR SINE MIR -73 189 16 22 35 0 0 chr13 79618013 79618042 -22255127 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 79618624 79618649 -22254520 + AT_rich Low_complexity Low_complexity 1 25 0 36 23 0 0 chr13 79618873 79618916 -22254253 + AT_rich Low_complexity Low_complexity 1 43 0 1132 137 24 14 chr13 79618917 79619128 -22254041 - L1MA2 LINE L1 0 6304 6092 238 263 29 34 chr13 79619647 79619822 -22253347 + (TTATA)n Simple_repeat Simple_repeat 3 176 0 422 301 138 36 chr13 79621082 79621500 -22251669 - L2 LINE L2 -245 3068 2592 419 294 283 3 chr13 79621514 79621878 -22251291 - L2 LINE L2 0 3313 2848 333 320 149 0 chr13 79623790 79623965 -22249204 + MIR SINE MIR 2 202 -60 871 294 92 25 chr13 79624865 79625225 -22247944 - LTR16A LTR ERVL -10 440 57 282 29 0 0 chr13 79625389 79625424 -22247745 + (CAT)n Simple_repeat Simple_repeat 2 36 0 759 226 72 9 chr13 79625808 79626029 -22247140 + MER96B DNA MER1_type? 1 235 -182 324 318 8 48 chr13 79627138 79627264 -22245905 - L1MC4 LINE L1 -1308 6734 6614 248 312 73 37 chr13 79629444 79629553 -22243616 - L2 LINE L2 -2 3270 3158 2398 247 51 10 chr13 79629809 79630732 -22242437 - L1M4 LINE L1 -2848 3298 2338 646 170 0 7 chr13 79630734 79630869 -22242300 + CT-rich Low_complexity Low_complexity 4 137 0 346 280 64 16 chr13 79632918 79633043 -22240126 + MIR3 SINE MIR 67 197 -11 530 101 13 0 chr13 79633210 79633289 -22239880 - MADE1 DNA Mariner 0 80 1 4358 181 41 36 chr13 79633636 79634610 -22238559 - MER45B DNA AcHobo -61 979 1 2094 252 21 4 chr13 79634754 79635273 -22237896 + MLT1F1 LTR MaLR 12 539 -28 1831 179 48 0 chr13 79635375 79635733 -22237436 + MSTA LTR MaLR 54 428 0 874 315 87 30 chr13 79635938 79636373 -22236796 + L2 LINE L2 2853 3312 -1 330 282 54 27 chr13 79636754 79636903 -22236266 - MLT1J2 LTR MaLR -16 434 282 1258 170 14 9 chr13 79638086 79638309 -22234860 - AluJo SINE Alu -45 267 44 275 351 0 23 chr13 79638533 79638664 -22234505 + MLT1I LTR MaLR 34 161 -248 269 290 58 85 chr13 79638689 79638963 -22234206 - L1MC4 LINE L1 -2153 5655 5390 2196 128 0 6 chr13 79638963 79639276 -22233893 - AluY SINE Alu 0 311 1 269 290 58 85 chr13 79639276 79639329 -22233840 - L1MC4 LINE L1 -2418 5390 5337 291 266 0 11 chr13 79639377 79639471 -22233698 + LTR67 LTR ERVL 50 142 -415 277 253 0 0 chr13 79639875 79639954 -22233215 + C-rich Low_complexity Low_complexity 1 79 0 202 344 80 8 chr13 79641317 79641442 -22231727 + MIR SINE MIR 58 191 -71 596 163 7 109 chr13 79641961 79642108 -22231061 + L1MA8 LINE L1 6155 6286 -5 243 331 22 15 chr13 79642211 79642347 -22230822 + MIR SINE MIR 124 260 -2 1305 123 9 0 chr13 79642456 79642668 -22230501 - Tigger1 DNA MER2_type 0 2418 2205 1375 149 7 75 chr13 79642669 79642977 -22230192 - Tigger1 DNA MER2_type -174 2244 1958 32 0 0 0 chr13 79643366 79643398 -22229771 + AT_rich Low_complexity Low_complexity 1 32 0 1833 176 0 13 chr13 79643408 79643710 -22229459 + AluJo SINE Alu 2 299 -13 471 206 200 61 chr13 79644475 79644536 -22228633 + MLT1H LTR MaLR 26 77 -472 1586 184 34 17 chr13 79644536 79644830 -22228339 + AluJo SINE Alu 1 299 -13 471 206 200 61 chr13 79644830 79645169 -22228000 + MLT1H LTR MaLR 77 549 0 335 294 47 0 chr13 79645369 79645454 -22227715 - MIR3 SINE MIR -31 177 89 28 48 0 0 chr13 79645818 79645860 -22227309 + AT_rich Low_complexity Low_complexity 1 42 0 2086 105 41 7 chr13 79645949 79646243 -22226926 + AluSc SINE Alu 1 304 -5 518 86 12 0 chr13 79646901 79646982 -22226187 + (TC)n Simple_repeat Simple_repeat 1 82 0 239 269 32 21 chr13 79647558 79647651 -22225518 + GA-rich Low_complexity Low_complexity 2 95 0 662 194 16 0 chr13 79648282 79648406 -22224763 + MLT1I LTR MaLR 85 210 -199 418 225 125 8 chr13 79648452 79648572 -22224597 + MLT1I LTR MaLR 276 409 0 338 300 0 0 chr13 79648595 79648675 -22224494 - L2 LINE L2 -706 2608 2529 248 238 40 126 chr13 79649362 79649513 -22223656 + L3 LINE CR1 846 983 -594 474 156 0 0 chr13 79650738 79650815 -22222354 - MADE1 DNA Mariner -3 77 1 21 36 0 0 chr13 79651278 79651306 -22221863 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr13 79651430 79651451 -22221718 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr13 79653761 79653783 -22219386 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 627 279 99 90 chr13 79653826 79654036 -22219133 - L1MEd LINE L1 -5011 1108 901 2201 107 3 3 chr13 79654036 79654344 -22218825 - AluSg SINE Alu -2 308 1 627 279 99 90 chr13 79654344 79654733 -22218436 - L1MEd LINE L1 -5218 901 517 2265 114 0 7 chr13 79654733 79655041 -22218128 - AluSx SINE Alu -6 306 1 627 279 99 90 chr13 79655041 79655485 -22217684 - L1MEd LINE L1 -5602 517 54 1376 166 0 0 chr13 79655831 79656048 -22217121 + AluY SINE Alu 1 217 -94 257 128 0 0 chr13 79656049 79656088 -22217081 + FLAM_A SINE Alu 84 122 -11 2253 138 0 0 chr13 79656325 79656637 -22216532 - AluSx SINE Alu 0 312 1 815 116 0 0 chr13 79656694 79656815 -22216354 - L1MA3 LINE L1 0 6305 6185 2287 103 3 10 chr13 79657337 79657649 -22215520 + AluSx SINE Alu 1 310 -2 283 271 10 62 chr13 79658155 79658251 -22214918 - MIR3 SINE MIR -7 201 111 867 200 12 12 chr13 79659754 79659924 -22213245 - AluJo/FRAM SINE Alu -9 303 134 1799 163 7 3 chr13 79659924 79660219 -22212950 - AluJo SINE Alu -15 297 2 1517 245 117 21 chr13 79661074 79661585 -22211584 + MLT1E LTR MaLR 31 590 -3 1979 160 35 19 chr13 79661666 79662035 -22211134 - THE1C LTR MaLR 0 375 1 337 286 50 0 chr13 79662109 79662228 -22210941 - MIR SINE MIR -11 251 127 364 278 0 0 chr13 79662235 79662325 -22210844 + MIR SINE MIR 163 252 -10 1141 297 54 35 chr13 79662377 79662896 -22210273 + L3 LINE CR1 668 1196 -381 547 227 50 28 chr13 79663027 79663168 -22210001 + MIR3 SINE MIR 33 176 -32 1713 183 0 23 chr13 79663364 79663670 -22209499 + AluJb SINE Alu 1 299 -13 356 234 21 57 chr13 79663685 79663826 -22209343 - MER103 DNA DNA -16 150 15 1687 181 11 3 chr13 79664733 79665020 -22208149 - AluJb SINE Alu -23 289 1 2492 62 0 7 chr13 79665794 79666101 -22207068 - AluY SINE Alu -3 308 4 260 116 0 47 chr13 79666604 79666690 -22206479 + (TA)n Simple_repeat Simple_repeat 1 82 0 918 259 112 52 chr13 79668280 79668762 -22204407 - MLT1J LTR MaLR 0 511 1 312 259 93 0 chr13 79669152 79669260 -22203909 + L2 LINE L2 3191 3308 -5 903 274 109 72 chr13 79669374 79670337 -22202832 + L1MEd LINE L1 16 1014 -5105 1087 265 105 15 chr13 79670357 79670765 -22202404 - LTR16C LTR ERVL -11 480 36 350 202 0 12 chr13 79670806 79670890 -22202279 + L1MEd LINE L1 1019 1101 -5018 961 264 46 9 chr13 79670892 79671237 -22201932 + L1ME3A LINE L1 5605 5962 -208 765 222 27 43 chr13 79671251 79671436 -22201733 - MIR SINE MIR -3 259 78 2180 114 104 65 chr13 79671581 79671623 -22201546 - MSTA LTR MaLR 0 428 389 1832 149 13 32 chr13 79671623 79671939 -22201230 + AluSq SINE Alu 1 310 -3 2180 114 104 65 chr13 79671939 79672308 -22200861 - MSTA LTR MaLR -39 389 1 308 290 9 0 chr13 79673080 79673187 -22199982 + L1ME3A LINE L1 5430 5537 -625 1491 232 109 20 chr13 79673193 79673681 -22199488 + L1ME3A LINE L1 5627 6157 -13 1893 153 37 0 chr13 79673841 79674141 -22199028 + AluSx SINE Alu 1 311 -1 919 110 2 5 chr13 79674462 79674626 -22198543 - L1P5 LINE L1 -659 5495 5334 2265 113 3 3 chr13 79675377 79675686 -22197483 + AluSp SINE Alu 1 309 -4 23 33 0 0 chr13 79675830 79675860 -22197309 + AT_rich Low_complexity Low_complexity 1 30 0 2079 131 3 13 chr13 79676359 79676673 -22196496 + AluSx SINE Alu 1 311 -1 210 245 19 19 chr13 79676678 79676731 -22196438 - MIR SINE MIR -73 135 83 323 364 15 0 chr13 79677914 79678046 -22195123 - MIR3 SINE MIR -8 200 67 * 715 265 40 40 chr13 79678027 79678275 -22194894 + MIR SINE MIR 5 249 -13 222 207 0 0 chr13 79680016 79680074 -22193095 + T-rich Low_complexity Low_complexity 2 59 0 189 156 0 0 chr13 79680560 79680592 -22192577 + L2 LINE L2 2992 3023 -249 2236 99 0 32 chr13 79680615 79680929 -22192240 - AluSc SINE Alu -5 304 1 935 282 162 9 chr13 79680984 79681317 -22191852 - L2 LINE L2 0 3313 2930 218 282 205 0 chr13 79681370 79681487 -22191682 + L2 LINE L2 3170 3310 -3 * 290 273 195 8 chr13 79681486 79681614 -22191555 + MIR3 SINE MIR 9 160 -48 261 0 0 0 chr13 79682511 79682540 -22190629 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 24 0 24 chr13 79682540 79682553 -22190616 + AT_rich Low_complexity Low_complexity 1 13 -28 2316 89 0 7 chr13 79682553 79682846 -22190323 - AluSg1 SINE Alu -16 293 3 24 24 0 24 chr13 79682846 79682874 -22190295 + AT_rich Low_complexity Low_complexity 13 41 0 2030 116 0 0 chr13 79683951 79684226 -22188943 - AluSg1 SINE Alu -34 275 1 1787 150 61 25 chr13 79684418 79684779 -22188390 - THE1C LTR MaLR 0 375 2 2539 69 0 16 chr13 79685370 79685734 -22187435 + MER4A LTR ERV1 1 358 -306 1999 128 3 0 chr13 79685801 79686143 -22187026 + AluSx SINE Alu 1 343 0 241 206 48 0 chr13 79686281 79686344 -22186825 + L1MB2 LINE L1 6103 6168 -3 838 187 27 23 chr13 79686353 79686572 -22186597 - L1M4 LINE L1 -1284 4862 4643 26 50 0 0 chr13 79686677 79686717 -22186452 + AT_rich Low_complexity Low_complexity 1 40 0 998 172 43 9 chr13 79687715 79687947 -22185222 + L1MA7 LINE L1 6048 6287 -4 858 148 0 0 chr13 79688457 79688579 -22184590 - FLAM_C SINE Alu -20 123 2 811 167 0 8 chr13 79689109 79689241 -22183928 + FLAM_C SINE Alu 1 131 -12 876 152 0 0 chr13 79689588 79689713 -22183456 + FLAM_C SINE Alu 2 126 -17 2422 62 3 0 chr13 79689733 79690023 -22183146 + AluY SINE Alu 1 291 -20 1057 226 63 38 chr13 79690739 79691026 -22182143 + AluJo SINE Alu 1 294 -8 374 150 0 0 chr13 79691117 79691177 -22181992 - FLAM SINE Alu -16 117 58 424 140 0 108 chr13 79691178 79691271 -22181898 - AluJo SINE Alu -164 148 66 278 300 26 37 chr13 79691444 79691634 -22181535 - LTR16C LTR ERVL 0 491 304 6157 29 0 0 chr13 79692113 79692928 -22180241 - L1PA3 LINE L1 -144 6011 5197 3007 32 0 0 chr13 79692928 79693301 -22179868 + L1P LINE L1 4586 4958 -1188 199 266 47 31 chr13 79694602 79694666 -22178503 - MIR3 SINE MIR -36 172 108 24 32 0 0 chr13 79696766 79696797 -22176372 + AT_rich Low_complexity Low_complexity 1 31 0 208 234 36 9 chr13 79698625 79698736 -22174433 + GA-rich Low_complexity Low_complexity 1 114 0 370 208 229 0 chr13 79699691 79699787 -22173382 + MIR SINE MIR 74 191 -71 2163 130 0 0 chr13 79700439 79700740 -22172429 - AluSc SINE Alu -8 301 1 1736 189 0 3 chr13 79700843 79701150 -22172019 - AluJo SINE Alu -6 306 1 14447 142 12 11 chr13 79702565 79704980 -22168189 + Tigger1 DNA MER2_type 1 2417 -1 1821 111 49 55 chr13 79704980 79705305 -22167864 + THE1B LTR MaLR 1 323 -41 627 177 0 0 chr13 79705305 79705461 -22167708 + AluSp/q SINE Alu 188 343 0 327 120 0 0 chr13 79705462 79705512 -22167657 + THE1B LTR MaLR 326 375 0 321 350 32 13 chr13 79705586 79705743 -22167426 + MIR SINE MIR 71 230 -32 258 32 0 0 chr13 79706359 79706390 -22166779 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr13 79706410 79706433 -22166736 + AT_rich Low_complexity Low_complexity 1 23 0 7408 41 6 0 chr13 79706439 79707542 -22165627 - L1PA5 LINE L1 -6 6148 5044 426 125 0 0 chr13 79707543 79707599 -22165570 - AluJb SINE Alu -44 268 213 339 355 42 42 chr13 79707871 79708158 -22165011 - L2 LINE L2 -504 2810 2524 22 35 0 0 chr13 79708531 79708560 -22164609 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr13 79709926 79709952 -22163217 + (T)n Simple_repeat Simple_repeat 1 26 0 2081 134 0 0 chr13 79710066 79710373 -22162796 + AluSg SINE Alu 3 309 -1 319 263 62 0 chr13 79711439 79711519 -22161650 + L2 LINE L2 3229 3313 0 330 171 0 0 chr13 79713629 79713699 -22159470 + GA-rich Low_complexity Low_complexity 2 71 0 3112 186 61 6 chr13 79713699 79714338 -22158831 + MER63C DNA MER1_type 84 757 -173 437 229 79 75 chr13 79714724 79714938 -22158231 - MER58C DNA MER1_type 0 215 1 21 71 0 0 chr13 79715969 79716011 -22157158 + AT_rich Low_complexity Low_complexity 1 42 0 250 364 45 15 chr13 79716011 79716143 -22157026 + L2 LINE L2 3137 3272 0 279 291 36 27 chr13 79716349 79716459 -22156710 - MIR SINE MIR -133 129 19 778 235 16 6 chr13 79716743 79716926 -22156243 + MER82 DNA MER2_type 9 193 -460 252 59 0 0 chr13 79716961 79716995 -22156174 + (GA)n Simple_repeat Simple_repeat 2 35 0 1897 207 36 45 chr13 79716995 79717440 -22155729 + MER82 DNA MER2_type 213 653 0 2322 48 9 78 chr13 79718271 79718604 -22154565 + AluY SINE Alu 1 310 -1 880 267 80 123 chr13 79719468 79720148 -22153021 - L2 LINE L2 0 3313 2661 8138 161 41 10 chr13 79721639 79722464 -22150705 - L1MA4A LINE L1 -35 6268 5470 402 74 0 0 chr13 79722464 79722518 -22150651 + (TA)n Simple_repeat Simple_repeat 2 55 0 8138 161 41 10 chr13 79722518 79724205 -22148964 - L1MA4A LINE L1 -833 5470 3618 2166 108 20 0 chr13 79725388 79725684 -22147485 - AluSq SINE Alu -9 304 3 577 304 22 5 chr13 79726079 79726263 -22146906 + MLT1I LTR MaLR 1 187 -222 206 31 0 31 chr13 79726359 79726391 -22146778 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1039 187 48 151 chr13 79726435 79726852 -22146317 + MLT1A2 LTR MaLR 1 374 0 591 338 36 9 chr13 79726981 79727206 -22145963 + MIR SINE MIR 32 262 0 21 36 0 0 chr13 79728900 79728928 -22144241 + AT_rich Low_complexity Low_complexity 1 28 0 183 100 0 0 chr13 79729478 79729508 -22143661 + (TTA)n Simple_repeat Simple_repeat 1 30 0 309 281 22 36 chr13 79730158 79730297 -22142872 + MIR SINE MIR 76 212 -50 856 237 0 21 chr13 79730402 79730592 -22142577 + MER58A DNA MER1_type 1 186 -38 234 149 170 0 chr13 79730628 79730675 -22142494 + MER58A DNA MER1_type 170 224 0 231 36 0 0 chr13 79732813 79732841 -22140328 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1386 180 28 72 chr13 79733633 79734061 -22139108 + LTR37A LTR ERV1 18 426 0 233 277 0 0 chr13 79734524 79734607 -22138562 - L1MC4 LINE L1 -1324 6718 6636 1536 196 84 3 chr13 79735471 79735792 -22137377 + MER7A DNA MER2_type 1 345 -1 205 338 0 0 chr13 79736388 79736456 -22136713 + L2 LINE L2 3245 3312 -1 2269 70 28 0 chr13 79736867 79737154 -22136015 + AluSq SINE Alu 1 295 -18 954 78 0 31 chr13 79737277 79737406 -22135763 - AluSc SINE Alu -184 125 1 604 346 102 16 chr13 79738097 79738527 -22134642 - L2 LINE L2 -502 2812 2346 1230 252 33 15 chr13 79738679 79739012 -22134157 + MER58B DNA MER1_type 2 340 -1 7305 107 67 155 chr13 79740787 79742673 -22130496 - pTR5 LTR ERV1 0 2438 379 532 163 51 0 chr13 79743864 79743962 -22129207 - MLT1C LTR MaLR 0 467 365 1830 149 44 33 chr13 79744035 79744168 -22129001 - MLT1C LTR MaLR -101 366 236 2097 132 65 8 chr13 79744168 79744523 -22128646 + THE1C LTR MaLR 1 375 0 1830 149 44 33 chr13 79744523 79744751 -22128418 - MLT1C LTR MaLR -231 236 1 467 330 73 34 chr13 79744751 79745105 -22128064 - MLT1I LTR MaLR -12 397 30 1707 177 0 24 chr13 79746391 79746685 -22126484 - AluJo SINE Alu -25 287 1 183 306 0 130 chr13 79748918 79749026 -22124143 - MIR3 SINE MIR -31 177 84 13115 159 39 9 chr13 79751240 79753587 -22119582 - Tigger1 DNA MER2_type -1 2417 1 328 380 7 13 chr13 79753671 79753821 -22119348 + L2 LINE L2 3161 3309 -4 242 372 54 0 chr13 79754233 79754381 -22118788 - MIR SINE MIR -78 184 29 1682 177 3 31 chr13 79754884 79755201 -22117968 - AluJo SINE Alu -4 308 1 328 285 79 61 chr13 79756682 79756847 -22116322 - L1M4 LINE L1 -885 5261 5094 1193 251 62 70 chr13 79756948 79757479 -22115690 - L1M4 LINE L1 -1020 5126 4600 3475 269 59 24 chr13 79757523 79758537 -22114632 - L1M4 LINE L1 -2091 4055 2965 2136 77 30 40 chr13 79758537 79758834 -22114335 + AluY SINE Alu 1 294 -17 3475 269 59 24 chr13 79758834 79759406 -22113763 - L1M4 LINE L1 -3181 2965 2414 5383 195 136 30 chr13 79759514 79760867 -22112302 - MER52A LTR ERV1 -8 1747 269 275 241 0 0 chr13 79761309 79761367 -22111802 - MER52A LTR ERV1 -1697 58 1 266 353 8 8 chr13 79761423 79761542 -22111627 - L1MDb LINE L1 -5519 890 772 276 291 26 17 chr13 79761993 79762110 -22111059 - L1MDb LINE L1 -5947 449 332 336 273 13 0 chr13 79762182 79762259 -22110910 + FRAM/FAM SINE Alu 1 78 -88 920 199 28 0 chr13 79762259 79762435 -22110734 + AluJo SINE Alu 95 275 -37 246 32 0 0 chr13 79762460 79762491 -22110678 + (CA)n Simple_repeat Simple_repeat 2 32 0 300 91 0 0 chr13 79763569 79763613 -22109556 + (TG)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chr13 79764451 79764480 -22108689 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr13 79764513 79764537 -22108632 + AT_rich Low_complexity Low_complexity 1 24 0 1025 144 0 31 chr13 79766802 79766962 -22106207 + AluSx SINE Alu 1 155 -157 22 35 0 0 chr13 79767612 79767641 -22105528 + AT_rich Low_complexity Low_complexity 1 29 0 2784 247 78 23 chr13 79767803 79769684 -22103485 - L1MB5 LINE L1 -18 6156 4138 247 335 19 87 chr13 79772455 79772616 -22100553 - L2 LINE L2 -217 3055 2906 291 350 127 47 chr13 79772952 79773711 -22099458 - L2 LINE L2 -803 2511 1693 350 254 0 24 chr13 79773814 79773940 -22099229 + MER103 DNA DNA 26 148 -18 2367 93 0 0 chr13 79774006 79774307 -22098862 + AluSc SINE Alu 1 301 -8 1179 134 55 5 chr13 79774563 79774764 -22098405 - L1PA13 LINE L1 -2 6161 5951 22 70 0 0 chr13 79775264 79775307 -22097862 + AT_rich Low_complexity Low_complexity 1 43 0 12368 41 3 0 chr13 79775318 79777596 -22095573 - L1PA5 LINE L1 -7 6147 3866 191 143 0 54 chr13 79777798 79777854 -22095315 + (T)n Simple_repeat Simple_repeat 1 53 0 42045 38 23 1 chr13 79777861 79783880 -22089289 - L1PA2 LINE L1 0 6155 3 978 225 72 17 chr13 79783970 79784206 -22088963 + MIR SINE MIR 1 249 -13 2337 111 44 3 chr13 79785771 79786112 -22087057 + THE1A LTR MaLR 1 355 0 363 60 0 0 chr13 79786434 79786484 -22086685 + (CA)n Simple_repeat Simple_repeat 1 50 0 229 241 35 11 chr13 79788001 79788088 -22085081 - L1MC4 LINE L1 -1339 6703 6615 200 217 50 0 chr13 79788089 79788149 -22085020 + (TA)n Simple_repeat Simple_repeat 1 63 0 336 211 0 0 chr13 79788169 79788245 -22084924 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 265 209 60 0 chr13 79788287 79788374 -22084795 + (CATA)n Simple_repeat Simple_repeat 1 92 0 328 378 5 10 chr13 79790850 79791043 -22082126 + MER20B DNA MER1_type 98 289 -494 768 137 47 104 chr13 79791936 79792147 -22081022 - L1MA9 LINE L1 -39 6273 6075 2320 91 0 3 chr13 79794354 79794661 -22078508 - AluSg SINE Alu -4 306 1 222 150 0 0 chr13 79794756 79794796 -22078373 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1104 257 90 3 chr13 79795421 79795756 -22077413 - MER63 DNA MER1_type -1 1059 696 312 177 65 0 chr13 79796036 79796098 -22077071 - MLT2C1 LTR ERVL 0 397 332 21 36 0 0 chr13 79796099 79796127 -22077042 + AT_rich Low_complexity Low_complexity 1 28 0 1852 161 10 53 chr13 79796132 79796488 -22076681 - MLT2C1 LTR ERVL -35 429 18 1391 257 145 2 chr13 79796498 79796961 -22076208 - MER119 DNA MER1_type -37 546 18 197 105 0 26 chr13 79797162 79797200 -22075969 + (TG)n Simple_repeat Simple_repeat 2 38 0 685 228 82 0 chr13 79800268 79800426 -22072743 - MER58B DNA MER1_type -36 305 135 2330 170 47 2 chr13 79801073 79801521 -22071648 - L1MB3 LINE L1 -12 6171 5704 22 56 0 0 chr13 79802488 79802524 -22070645 + AT_rich Low_complexity Low_complexity 1 36 0 241 247 118 35 chr13 79802589 79802674 -22070495 - MIR SINE MIR -108 154 63 1125 37 0 0 chr13 79803775 79803911 -22069258 - L1HS LINE L1 0 6155 6020 1481 248 80 50 chr13 79804202 79804541 -22068628 - MER90 LTR ERV1 -18 557 195 2179 118 3 0 chr13 79804541 79804837 -22068332 - AluSp SINE Alu -16 297 1 1481 248 80 50 chr13 79804837 79805033 -22068136 - MER90 LTR ERV1 -380 195 6 22 35 0 0 chr13 79805313 79805342 -22067827 + AT_rich Low_complexity Low_complexity 1 29 0 2874 98 16 35 chr13 79805385 79805877 -22067292 - L1MA5A LINE L1 -1 6296 5814 * 15518 30 3 0 chr13 79805871 79808497 -22064672 - L1PA3 LINE L1 0 6155 3526 2464 156 33 9 chr13 79808503 79808959 -22064210 - L1MA5A LINE L1 -476 5821 5355 21 57 0 0 chr13 79811799 79811834 -22061335 + AT_rich Low_complexity Low_complexity 1 35 0 2083 100 0 56 chr13 79811895 79812214 -22060955 + AluSc SINE Alu 1 301 -8 24 32 0 0 chr13 79813481 79813512 -22059657 + AT_rich Low_complexity Low_complexity 1 31 0 229 213 38 88 chr13 79814365 79814445 -22058724 - MIR SINE MIR -173 89 14 21 0 0 0 chr13 79814994 79815015 -22058154 + AT_rich Low_complexity Low_complexity 1 21 0 215 277 29 88 chr13 79815665 79815802 -22057367 - L2 LINE L2 -15 3298 3170 236 30 30 0 chr13 79817279 79817312 -22055857 + (TCC)n Simple_repeat Simple_repeat 3 36 0 * 303 104 0 0 chr13 79817310 79817358 -22055811 + (TC)n Simple_repeat Simple_repeat 2 49 0 2247 92 0 13 chr13 79818257 79818563 -22054606 + AluSg SINE Alu 1 302 -8 237 132 19 19 chr13 79818589 79818642 -22054527 + L1MC5 LINE L1 7833 7885 -76 1889 108 24 44 chr13 79818710 79819005 -22054164 + AluSx SINE Alu 7 295 -17 22 0 0 0 chr13 79819951 79819973 -22053196 + AT_rich Low_complexity Low_complexity 1 22 0 258 304 35 26 chr13 79820593 79820708 -22052461 - MER5A DNA MER1_type -15 174 59 3255 97 22 44 chr13 79821198 79821241 -22051928 - L1MA1 LINE L1 0 6302 6260 288 77 0 0 chr13 79821241 79821280 -22051889 + (TA)n Simple_repeat Simple_repeat 2 40 0 3255 97 22 44 chr13 79821280 79821780 -22051389 - L1MA1 LINE L1 -42 6260 5771 22 35 0 0 chr13 79822636 79822665 -22050504 + AT_rich Low_complexity Low_complexity 1 29 0 269 288 151 55 chr13 79822885 79823104 -22050065 + MIR SINE MIR 17 256 -6 1541 172 0 40 chr13 79825085 79825382 -22047787 + AluJb SINE Alu 14 298 -14 449 75 0 19 chr13 79825420 79825632 -22047537 + AluY SINE Alu 1 302 -10 198 0 0 0 chr13 79826251 79826273 -22046896 + (TA)n Simple_repeat Simple_repeat 2 23 0 287 295 62 18 chr13 79827319 79827431 -22045738 + MIR SINE MIR 118 234 -28 598 300 48 22 chr13 79827585 79827815 -22045354 - MIR SINE MIR -10 252 20 984 75 0 0 chr13 79828731 79828865 -22044304 - L1PB1 LINE L1 0 6151 6018 2325 110 0 0 chr13 79830488 79830798 -22042371 + AluSg SINE Alu 1 310 0 4796 71 2 0 chr13 79831412 79832032 -22041137 - L1PA7 LINE L1 0 6154 5534 942 107 0 0 chr13 79832338 79832469 -22040700 - AluY SINE Alu -180 131 1 311 276 43 35 chr13 79834133 79834249 -22038920 + MIR SINE MIR 45 161 -101 341 333 148 0 chr13 79835469 79835631 -22037538 + L3 LINE CR1 1312 1497 -80 22 70 0 0 chr13 79835727 79835770 -22037399 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 79835879 79835900 -22037269 + AT_rich Low_complexity Low_complexity 1 21 0 746 228 33 5 chr13 79837239 79837423 -22035746 + MER5A DNA MER1_type 1 189 0 443 283 15 76 chr13 79837915 79838113 -22035056 - L2 LINE L2 -10 3303 3118 22 35 0 0 chr13 79838324 79838353 -22034816 + AT_rich Low_complexity Low_complexity 1 29 0 1108 244 19 25 chr13 79838949 79838974 -22034195 - L1MB8 LINE L1 -12 6166 6142 1575 241 46 26 chr13 79838974 79839431 -22033738 + MLT1C LTR MaLR 2 467 0 1108 244 19 25 chr13 79839431 79839729 -22033440 - L1MB8 LINE L1 -36 6142 5845 2117 115 10 0 chr13 79839858 79840153 -22033016 + AluSx SINE Alu 1 298 -14 814 209 39 6 chr13 79840234 79840416 -22032753 - MER5A DNA MER1_type -1 188 1 2546 249 72 80 chr13 79841076 79842311 -22030858 - MER69B DNA AcHobo 0 1226 2 6848 167 30 13 chr13 79842337 79843783 -22029386 - L1 LINE L1 -1779 4367 2897 2058 192 46 15 chr13 79843771 79844230 -22028939 + L1MA4 LINE L1 5823 6295 -5 * 23 0 0 0 chr13 79844230 79844253 -22028916 + AT_rich Low_complexity Low_complexity 1 23 0 276 200 0 0 chr13 79844270 79844330 -22028839 + GA-rich Low_complexity Low_complexity 3 62 0 1876 181 25 8 chr13 79844864 79845223 -22027946 - MLT1A1 LTR MaLR 0 365 1 438 232 107 18 chr13 79845370 79845482 -22027687 - L2 LINE L2 -1 3312 3191 1721 174 17 0 chr13 79846274 79846567 -22026602 + AluJb SINE Alu 2 299 -13 228 182 0 0 chr13 79848185 79848229 -22024940 + (TG)n Simple_repeat Simple_repeat 1 44 0 2138 113 10 0 chr13 79848260 79848562 -22024607 - AluSq SINE Alu -8 305 1 407 288 58 7 chr13 79848837 79848976 -22024193 - MLT1J LTR MaLR -359 152 7 520 232 149 26 chr13 79849159 79849353 -22023816 + Charlie1 DNA MER1_type 9 226 -2535 * 688 172 8 15 chr13 79849350 79849484 -22023685 + Charlie1 DNA MER1_type 2623 2755 -6 1811 174 7 3 chr13 79849531 79849836 -22023333 - AluJb SINE Alu -6 306 1 23 33 0 0 chr13 79849892 79849922 -22023247 + AT_rich Low_complexity Low_complexity 1 30 0 3448 69 24 0 chr13 79850809 79851273 -22021896 - L1PA13 LINE L1 -1 6162 5688 1392 184 0 8 chr13 79851273 79851539 -22021630 + L1P LINE L1 4804 5067 -1079 397 284 30 37 chr13 79851916 79852050 -22021119 + MIR SINE MIR 36 168 -94 324 239 54 0 chr13 79852085 79852177 -22020992 + MIR SINE MIR 136 232 -30 210 292 15 15 chr13 79852206 79852271 -22020898 + MIR3 SINE MIR 131 195 -13 306 0 0 0 chr13 79853214 79853248 -22019921 + (TG)n Simple_repeat Simple_repeat 2 35 0 1873 135 188 6 chr13 79853343 79853705 -22019464 - MSTA LTR MaLR 0 428 1 651 198 156 0 chr13 79853927 79854094 -22019075 - L1MC4 LINE L1 0 8042 7850 183 349 0 0 chr13 79854492 79854555 -22018614 + MIR3 SINE MIR 93 155 -53 931 18 0 0 chr13 79855736 79855846 -22017323 + L1PA2 LINE L1 6046 6155 0 2458 62 0 3 chr13 79856031 79856337 -22016832 + AluY SINE Alu 4 308 -3 746 266 102 22 chr13 79856467 79856741 -22016428 - MER46C DNA MER2_type -39 299 4 1031 148 0 0 chr13 79857042 79857197 -22015972 - AluSg/x SINE Alu -23 289 135 264 148 0 0 chr13 79857207 79857268 -22015901 + (TA)n Simple_repeat Simple_repeat 1 61 0 927 103 8 0 chr13 79857268 79857394 -22015775 - AluY SINE Alu -184 127 1 32 43 0 0 chr13 79857806 79857852 -22015317 + AT_rich Low_complexity Low_complexity 1 46 0 382 272 132 49 chr13 79858525 79858852 -22014317 + L1MC4 LINE L1 5609 5962 -1846 1766 74 0 31 chr13 79858999 79859255 -22013914 - L1PA13 LINE L1 0 6163 5916 1698 224 0 16 chr13 79859477 79859848 -22013321 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chr13 79859984 79860012 -22013157 + AT_rich Low_complexity Low_complexity 1 28 0 270 157 10 0 chr13 79861390 79861445 -22011724 - MLT2D LTR ERVL 0 414 370 320 191 12 0 chr13 79861445 79861529 -22011640 + (TA)n Simple_repeat Simple_repeat 1 85 0 253 231 22 44 chr13 79861535 79861626 -22011543 + L1MC4 LINE L1 6615 6703 -1339 238 217 0 0 chr13 79861598 79861644 -22011525 - L1MC4 LINE L1 -1339 6703 6658 * 1239 286 69 18 chr13 79861682 79862129 -22011040 - MLT2B1 LTR ERVL -50 470 1 1786 176 74 45 chr13 79862359 79862710 -22010459 + Tigger2a DNA MER2_type 1 367 -2341 2203 100 0 0 chr13 79862710 79862991 -22010178 + AluSc SINE Alu 1 303 -6 181 0 0 0 chr13 79862991 79863011 -22010158 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1786 176 74 45 chr13 79863019 79863088 -22010081 + Tigger2a DNA MER2_type 367 433 -1 341 230 0 0 chr13 79863377 79863451 -22009718 + MER116 DNA Mariner 2 75 -5 238 302 65 28 chr13 79863457 79863600 -22009569 - MIR3 SINE MIR -62 146 5 2270 94 0 0 chr13 79865529 79865826 -22007343 + AluSg SINE Alu 14 310 0 1864 142 22 0 chr13 79865957 79866257 -22006912 + AluSx SINE Alu 5 310 0 1705 191 10 0 chr13 79867844 79868153 -22005016 - AluJo SINE Alu 0 312 1 621 261 76 0 chr13 79868277 79868434 -22004735 - MIR SINE MIR -17 245 77 188 221 44 73 chr13 79869143 79869211 -22003958 - L2 LINE L2 0 3313 3248 2120 99 10 29 chr13 79870398 79870712 -22002457 + AluSx SINE Alu 1 308 -4 346 247 66 99 chr13 79870746 79870928 -22002241 + MIR SINE MIR 87 262 0 318 358 37 0 chr13 79870941 79871050 -22002119 + L3 LINE CR1 1014 1126 -451 331 232 134 9 chr13 79871244 79871356 -22001813 - MER94 DNA DNA -1 133 8 226 355 90 20 chr13 79871366 79871566 -22001603 + L3 LINE CR1 1321 1534 -43 23 0 0 0 chr13 79871813 79871836 -22001333 + AT_rich Low_complexity Low_complexity 1 23 0 330 244 55 71 chr13 79872165 79872292 -22000877 - L2 LINE L2 -2 3311 3187 22 80 0 0 chr13 79873263 79873313 -21999856 + AT_rich Low_complexity Low_complexity 1 50 0 1949 126 14 0 chr13 79874059 79874228 -21998941 - AluSx SINE Alu 0 302 126 231 36 0 0 chr13 79874228 79874256 -21998913 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1949 126 14 0 chr13 79874256 79874384 -21998785 - AluSx SINE Alu -176 126 1 240 254 0 17 chr13 79875158 79875217 -21997952 + MER112 DNA MER1_type 8 65 -195 250 236 36 0 chr13 79875252 79875307 -21997862 - L2 LINE L2 0 3272 3216 301 241 18 0 chr13 79875404 79875516 -21997653 + (TA)n Simple_repeat Simple_repeat 2 115 0 544 266 68 19 chr13 79875526 79875733 -21997436 + MER112 DNA MER1_type 44 260 0 2282 75 0 0 chr13 79877064 79877344 -21995825 + AluY SINE Alu 1 280 -31 387 0 0 0 chr13 79877347 79877390 -21995779 + (CA)n Simple_repeat Simple_repeat 2 44 0 413 19 19 0 chr13 79878355 79878409 -21994760 + (CA)n Simple_repeat Simple_repeat 2 56 0 607 243 180 19 chr13 79879214 79879420 -21993749 + MIR SINE MIR 13 251 -11 24 77 0 0 chr13 79879504 79879556 -21993613 + AT_rich Low_complexity Low_complexity 1 52 0 234 313 88 0 chr13 79880693 79880773 -21992396 + MIR SINE MIR 160 246 -16 313 336 45 9 chr13 79882171 79882281 -21990888 + L2 LINE L2 3199 3312 -1 279 257 0 0 chr13 79883047 79883148 -21990021 + (TA)n Simple_repeat Simple_repeat 2 102 0 1753 161 98 0 chr13 79883666 79883982 -21989187 - MER7A DNA MER2_type -1 345 1 1360 210 31 7 chr13 79884288 79884578 -21988591 - AluJo SINE Alu -2 310 14 275 192 39 0 chr13 79885916 79885968 -21987201 - MLT1I LTR MaLR -68 341 288 323 297 61 14 chr13 79886289 79886437 -21986732 - MER5A DNA MER1_type -3 186 32 310 339 16 16 chr13 79886332 79886453 -21986716 + MER5A DNA MER1_type 63 183 -6 * 2214 132 42 5 chr13 79886582 79886968 -21986201 - L1MA4A LINE L1 -12 6291 5892 225 258 32 16 chr13 79887066 79887128 -21986041 - MIR SINE MIR -8 254 192 304 122 0 28 chr13 79887174 79887240 -21985929 - L1P2 LINE L1 -325 5829 5770 5742 145 20 24 chr13 79887466 79888292 -21984877 - L1MA6 LINE L1 0 6300 5479 2347 103 0 0 chr13 79888292 79888603 -21984566 - AluY SINE Alu 0 311 1 5742 145 20 24 chr13 79888603 79888873 -21984296 - L1MA6 LINE L1 -821 5479 5209 817 258 0 6 chr13 79891044 79891222 -21981947 - MER45A DNA AcHobo 0 178 2 1671 146 182 22 chr13 79891327 79891365 -21981804 - MSTA LTR MaLR 0 428 397 2301 107 0 0 chr13 79891365 79891665 -21981504 + AluSx SINE Alu 1 300 -12 1671 146 182 22 chr13 79891665 79891850 -21981319 - MSTA LTR MaLR -31 397 243 3043 53 3 0 chr13 79891850 79892226 -21980943 - L1PA7 LINE L1 0 6154 5778 1671 146 182 22 chr13 79892226 79892370 -21980799 - MSTA LTR MaLR -185 243 1 21 89 0 0 chr13 79893580 79893636 -21979533 + AT_rich Low_complexity Low_complexity 1 56 0 465 278 22 28 chr13 79894756 79894936 -21978233 + MIR SINE MIR 84 262 0 255 250 0 0 chr13 79895279 79895331 -21977838 + L2 LINE L2 3258 3309 -4 29 84 0 0 chr13 79895547 79895618 -21977551 + AT_rich Low_complexity Low_complexity 1 71 0 2067 162 12 40 chr13 79895658 79895897 -21977272 + MLT1B LTR MaLR 1 226 -164 1988 140 46 3 chr13 79895897 79896226 -21976943 - MER61A LTR ERV1 0 343 1 2067 162 12 40 chr13 79896226 79896387 -21976782 + MLT1B LTR MaLR 226 390 0 226 231 44 88 chr13 79896559 79896650 -21976519 + L2 LINE L2 3179 3265 -7 1510 162 79 11 chr13 79897171 79897436 -21975733 + AluJb SINE Alu 1 287 -25 318 106 0 0 chr13 79897436 79897483 -21975686 + (TA)n Simple_repeat Simple_repeat 1 47 0 1510 162 79 11 chr13 79897483 79897495 -21975674 + AluJb SINE Alu 287 297 -15 1959 107 37 0 chr13 79898209 79898523 -21974646 + AluSx SINE Alu 1 324 0 21 0 0 0 chr13 79898973 79898994 -21974175 + AT_rich Low_complexity Low_complexity 1 21 0 235 234 18 54 chr13 79899295 79899406 -21973763 - MLT1J LTR MaLR -10 501 395 237 333 32 21 chr13 79899584 79899677 -21973492 - MLT1L LTR MaLR -332 283 190 190 375 86 16 chr13 79900166 79900294 -21972875 + L3 LINE CR1 1391 1527 -50 478 239 35 98 chr13 79901365 79901689 -21971480 + MLT1I LTR MaLR 95 538 -4 31 0 0 0 chr13 79902823 79902854 -21970315 + AT_rich Low_complexity Low_complexity 1 31 0 843 285 159 44 chr13 79903779 79904539 -21968630 - L2 LINE L2 0 3313 2451 1463 217 103 7 chr13 79904642 79905080 -21968089 + Charlie4a DNA MER1_type 28 507 -1 489 323 170 0 chr13 79905148 79905371 -21967798 - MIR SINE MIR 0 262 2 762 198 0 0 chr13 79905555 79905727 -21967442 + CT-rich Low_complexity Low_complexity 4 175 0 216 220 0 20 chr13 79905729 79905779 -21967390 + T-rich Low_complexity Low_complexity 2 50 0 495 292 24 43 chr13 79906221 79906430 -21966739 + MIR SINE MIR 33 237 -25 3277 158 24 8 chr13 79906842 79907429 -21965740 - L1PA16 LINE L1 -2 6164 5569 1495 223 108 50 chr13 79908155 79908657 -21964512 - MER34 LTR ERV1 -1 541 11 376 311 82 5 chr13 79909204 79909400 -21963769 + L1ME4a LINE L1 5651 5861 -260 405 0 0 0 chr13 79909612 79909657 -21963512 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 190 184 70 140 chr13 79912917 79913031 -21960138 + L2 LINE L2 1513 1618 -1696 198 341 101 14 chr13 79913624 79913762 -21959407 - L3 LINE CR1 -10 1567 1418 291 161 129 0 chr13 79913932 79913994 -21959175 - MER116 DNA Mariner -5 75 6 1622 181 7 3 chr13 79914014 79914296 -21958873 + AluJo SINE Alu 1 283 -29 945 173 6 11 chr13 79916640 79916819 -21956350 + MER5B DNA MER1_type 1 178 0 24 0 0 0 chr13 79917093 79917117 -21956052 + AT_rich Low_complexity Low_complexity 1 24 0 180 286 0 71 chr13 79918344 79918414 -21954755 - MIR SINE MIR -38 224 160 342 0 0 0 chr13 79918421 79918459 -21954710 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 49 0 0 chr13 79918461 79918502 -21954667 + AT_rich Low_complexity Low_complexity 1 41 0 310 333 47 35 chr13 79918779 79918950 -21954219 - L3b LINE CR1 -134 1449 1277 516 110 0 0 chr13 79919103 79919176 -21953993 - Alu SINE Alu -16 293 221 2187 92 0 0 chr13 79919186 79919457 -21953712 - AluSx SINE Alu -25 287 17 2333 51 3 45 chr13 79919683 79919994 -21953175 - AluY SINE Alu -13 298 1 5254 177 8 4 chr13 79921596 79922882 -21950287 + L1P4 LINE L1 4288 5579 -586 307 161 0 0 chr13 79922877 79922933 -21950236 + L1PA16 LINE L1 6110 6165 -1 * 575 253 164 22 chr13 79922936 79923260 -21949909 - L1ME2 LINE L1 -44 6120 5751 292 198 233 17 chr13 79923270 79923386 -21949783 - L1ME2 LINE L1 -567 5597 5477 * 1095 255 38 108 chr13 79923382 79924064 -21949105 - L1ME2 LINE L1 -2215 3931 3298 328 319 147 12 chr13 79924498 79924661 -21948508 - MIR SINE MIR -57 205 21 183 156 0 0 chr13 79924741 79924773 -21948396 + (TA)n Simple_repeat Simple_repeat 2 33 0 1780 134 43 0 chr13 79926073 79926349 -21946820 - AluSx SINE Alu -24 288 1 2126 95 6 19 chr13 79927193 79927510 -21945659 + AluSq SINE Alu 1 313 0 323 242 22 22 chr13 79927757 79927848 -21945321 + MER5B DNA MER1_type 88 178 0 180 0 0 0 chr13 79927941 79927961 -21945208 + (A)n Simple_repeat Simple_repeat 1 20 0 189 338 26 0 chr13 79928690 79928767 -21944402 + MIR3 SINE MIR 130 208 0 22 35 0 0 chr13 79928994 79929023 -21944146 + AT_rich Low_complexity Low_complexity 1 29 0 1229 102 0 0 chr13 79929460 79929627 -21943542 - AluSg/x SINE Alu -9 303 137 657 270 89 14 chr13 79929923 79930216 -21942953 + L1ME4a LINE L1 5612 5926 -195 248 272 116 68 chr13 79931279 79931426 -21941743 + MIR SINE MIR 108 261 -1 22 70 0 0 chr13 79931742 79931785 -21941384 + AT_rich Low_complexity Low_complexity 1 43 0 1940 141 24 0 chr13 79932283 79932573 -21940596 - AluSx SINE Alu -15 297 1 755 255 134 39 chr13 79933257 79933697 -21939472 + MLT1D LTR MaLR 1 467 0 23 33 0 0 chr13 79935492 79935522 -21937647 + AT_rich Low_complexity Low_complexity 1 30 0 191 362 14 0 chr13 79935724 79935793 -21937376 - MIR3 SINE MIR -6 202 133 221 333 143 42 chr13 79935793 79935961 -21937208 + L2 LINE L2 2617 2801 -513 279 204 114 0 chr13 79936000 79936088 -21937081 + MER103 DNA DNA 1 98 -68 288 170 0 0 chr13 79937043 79937096 -21936073 + (TG)n Simple_repeat Simple_repeat 2 54 0 275 143 0 18 chr13 79937485 79937541 -21935628 + (TA)n Simple_repeat Simple_repeat 1 55 0 532 234 0 0 chr13 79938234 79938341 -21934828 + AluJb SINE Alu 159 265 -47 281 350 47 21 chr13 79940385 79940619 -21932550 - L1MC/D LINE L1 -2063 5745 5506 902 122 15 0 chr13 79940834 79940965 -21932204 + AluSx SINE Alu 1 133 -180 216 0 0 0 chr13 79940972 79940996 -21932173 + (TA)n Simple_repeat Simple_repeat 2 25 0 330 189 22 22 chr13 79940996 79941086 -21932083 - L1MC4 LINE L1 -1339 6703 6614 1187 137 0 26 chr13 79941104 79941294 -21931875 + AluSx SINE Alu 127 311 -1 312 315 64 35 chr13 79941325 79941528 -21931641 - MER102b DNA MER1_type -8 333 125 26 30 0 0 chr13 79942320 79942353 -21930816 + AT_rich Low_complexity Low_complexity 1 33 0 570 313 40 36 chr13 79942820 79943274 -21929895 - L1MC4a LINE L1 -313 5808 5665 263 340 0 48 chr13 79944603 79944706 -21928463 - L2 LINE L2 0 3272 3175 1813 172 25 73 chr13 79944882 79945290 -21927879 + MLT1B LTR MaLR 3 390 0 234 371 120 0 chr13 79945693 79945868 -21927301 - L2 LINE L2 -553 2761 2566 497 273 80 69 chr13 79947006 79947281 -21925888 - LTR16A LTR ERVL -11 439 162 1499 203 19 32 chr13 79947575 79947891 -21925278 + AluJb SINE Alu 1 312 0 26 0 0 0 chr13 79948286 79948312 -21924857 + AT_rich Low_complexity Low_complexity 1 26 0 1353 221 39 25 chr13 79948618 79948976 -21924193 - MLT1A1 LTR MaLR -2 363 1 2132 119 0 7 chr13 79949021 79949331 -21923838 - AluSq SINE Alu -5 308 1 247 292 0 45 chr13 79949480 79949569 -21923600 + L2 LINE L2 3216 3300 -13 192 40 0 0 chr13 79950563 79950588 -21922581 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 201 256 113 113 chr13 79950673 79950833 -21922336 - MIR SINE MIR -82 180 21 369 60 0 0 chr13 79952158 79952208 -21920961 - MADE1 DNA Mariner 0 80 31 347 286 219 24 chr13 79952350 79952560 -21920609 + MIR SINE MIR 12 262 0 322 115 0 58 chr13 79952755 79952807 -21920362 - MLT1J LTR MaLR -69 442 394 2870 181 20 3 chr13 79953204 79953791 -21919378 + L1MB4 LINE L1 5579 6175 -5 198 437 15 0 chr13 79954319 79954454 -21918715 - L2 LINE L2 -234 3038 2902 22 0 0 0 chr13 79955355 79955377 -21917792 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 79955660 79955683 -21917486 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr13 79956234 79956255 -21916914 + AT_rich Low_complexity Low_complexity 1 21 0 190 409 0 11 chr13 79956897 79956985 -21916184 - MIR SINE MIR -147 115 29 471 63 0 0 chr13 79958283 79958346 -21914823 + (TG)n Simple_repeat Simple_repeat 2 64 0 1495 171 32 29 chr13 79958349 79958630 -21914539 - AluJb SINE Alu -30 282 1 23 33 0 0 chr13 79959961 79959991 -21913178 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr13 79960273 79960314 -21912855 + AT_rich Low_complexity Low_complexity 1 41 0 986 175 9 86 chr13 79961457 79961782 -21911387 - AluSq SINE Alu -3 300 1 818 121 86 7 chr13 79962087 79962227 -21910942 + AluSc SINE Alu 152 302 -7 239 221 162 0 chr13 79962425 79962493 -21910676 + MER91C DNA MER1_type 42 120 -20 27 0 0 0 chr13 79963292 79963319 -21909850 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr13 79964393 79964414 -21908755 + AT_rich Low_complexity Low_complexity 1 21 0 1376 101 87 0 chr13 79965496 79965704 -21907465 - L1PA13 LINE L1 -11 6152 5927 427 344 33 27 chr13 79965981 79966164 -21907005 + L2 LINE L2 3089 3272 0 25 31 0 0 chr13 79966948 79966980 -21906189 + AT_rich Low_complexity Low_complexity 1 32 0 2241 177 10 8 chr13 79967484 79967886 -21905283 + LTR45B LTR ERV1 3 405 -84 32 43 0 0 chr13 79968105 79968151 -21905018 + AT_rich Low_complexity Low_complexity 1 46 0 10410 149 23 9 chr13 79969056 79970842 -21902327 + Tigger1 DNA MER2_type 1 1810 -608 679 219 69 57 chr13 79970962 79971208 -21901961 - MER41B LTR ERV1 -273 362 114 2913 153 4 16 chr13 79971211 79971714 -21901455 + L1PA16 LINE L1 5670 6166 0 246 290 93 37 chr13 79971762 79971869 -21901300 + MIR SINE MIR 79 191 -71 279 238 248 19 chr13 79971884 79971989 -21901180 + MER5A DNA MER1_type 61 189 0 6672 140 35 15 chr13 79972009 79973212 -21899957 + Tigger3b DNA MER2_type 1 1227 -4 12155 99 16 1 chr13 79973693 79976248 -21896921 - L1PA7 LINE L1 -8 6146 3560 1399 60 70 0 chr13 79976350 79976551 -21896618 - L1PA7 LINE L1 -3578 2568 2354 22 56 0 0 chr13 79977600 79977636 -21895533 + AT_rich Low_complexity Low_complexity 1 36 0 1589 221 81 27 chr13 79977833 79978276 -21894893 - MLT1C LTR MaLR 0 467 1 301 345 8 14 chr13 79978519 79978667 -21894502 + MLT1F LTR MaLR 1 148 -419 555 223 175 0 chr13 79978690 79978856 -21894313 + MLT1F LTR MaLR 346 540 -2 430 298 25 25 chr13 79980756 79980954 -21892215 + L2 LINE L2 2499 2696 -618 574 208 68 111 chr13 79980957 79981164 -21892005 - MER58A DNA MER1_type -23 201 4 339 307 84 72 chr13 79981166 79981627 -21891542 + L2 LINE L2 2698 3152 -161 1466 164 7 87 chr13 79981627 79981964 -21891205 - AluJb SINE Alu 0 312 1 339 307 84 72 chr13 79981964 79981984 -21891185 + L2 LINE L2 3152 3170 -143 1996 133 0 3 chr13 79981984 79982291 -21890878 - AluSx SINE Alu 0 306 1 339 307 84 72 chr13 79982291 79982413 -21890756 + L2 LINE L2 3170 3313 0 186 323 110 39 chr13 79982547 79982702 -21890467 + L3 LINE CR1 983 1148 -429 485 303 87 30 chr13 79983240 79983471 -21889698 + MIR SINE MIR 7 250 -12 986 202 0 0 chr13 79986632 79986805 -21886364 + Tigger5 DNA MER2_type 2151 2323 0 338 330 102 0 chr13 79986815 79986933 -21886236 + L2 LINE L2 3122 3251 -21 279 0 0 0 chr13 79990102 79990133 -21883036 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 201 74 0 0 chr13 79990538 79990565 -21882604 + (A)n Simple_repeat Simple_repeat 1 27 0 203 189 0 0 chr13 79991402 79991439 -21881730 + (TATG)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr13 79991500 79991540 -21881629 + AT_rich Low_complexity Low_complexity 1 40 0 2126 108 21 6 chr13 79991540 79991872 -21881297 - L1MA1 LINE L1 0 6302 5966 845 245 0 0 chr13 79991878 79992041 -21881128 - FRAM SINE Alu -3 163 1 24 0 0 0 chr13 79992786 79992810 -21880359 + AT_rich Low_complexity Low_complexity 1 24 0 37 0 0 0 chr13 79993251 79993288 -21879881 + AT_rich Low_complexity Low_complexity 1 37 0 2337 67 30 3 chr13 79994996 79995293 -21877876 + AluY SINE Alu 1 305 -6 333 0 0 0 chr13 80047071 80047108 -21826061 + (CA)n Simple_repeat Simple_repeat 2 38 0 2411 92 0 0 chr13 80047472 80047778 -21825391 + AluSc SINE Alu 1 306 -3 187 333 69 0 chr13 80047859 80047946 -21825223 - MIR SINE MIR -112 150 58 4949 161 35 7 chr13 80048300 80049241 -21823928 - L1MA8 LINE L1 -6 6285 5319 4683 91 44 22 chr13 80049313 80050039 -21823130 - L1PA10 LINE L1 -1 6167 5426 348 24 0 0 chr13 80050040 80050081 -21823088 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 193 358 32 49 chr13 80050486 80050609 -21822560 + L2 LINE L2 3143 3263 -9 278 355 99 17 chr13 80051833 80052005 -21821164 - MER5A DNA MER1_type 0 189 4 1713 175 24 7 chr13 80052155 80052447 -21820722 + AluJo SINE Alu 1 297 -15 1100 215 9 5 chr13 80053727 80053950 -21819219 - MER58A DNA MER1_type 0 224 1 1085 193 61 4 chr13 80054025 80054305 -21818864 - L1MA4 LINE L1 -2 6298 6003 1131 207 47 103 chr13 80054540 80054927 -21818242 - MLT1A1 LTR MaLR 0 365 1 234 0 0 0 chr13 80054995 80055021 -21818148 + (CA)n Simple_repeat Simple_repeat 2 27 0 978 318 87 14 chr13 80055164 80055749 -21817420 - L2 LINE L2 -445 2869 2242 252 0 0 0 chr13 80055959 80055987 -21817182 + (TC)n Simple_repeat Simple_repeat 2 29 0 225 0 0 0 chr13 80055987 80056012 -21817157 + (TA)n Simple_repeat Simple_repeat 1 25 0 546 24 12 24 chr13 80056040 80056122 -21817047 + (TA)n Simple_repeat Simple_repeat 1 81 0 305 378 62 40 chr13 80057087 80057410 -21815759 - L2 LINE L2 0 3272 2943 212 253 27 53 chr13 80057689 80057764 -21815405 - L2 LINE L2 0 3313 3241 180 111 0 0 chr13 80058071 80058098 -21815071 + (T)n Simple_repeat Simple_repeat 1 27 0 2017 138 0 0 chr13 80058791 80059087 -21814082 - AluSx SINE Alu -16 296 1 262 326 99 28 chr13 80059371 80059512 -21813657 + MIR SINE MIR 40 190 -72 564 171 129 14 chr13 80059684 80059824 -21813345 + MER105 DNA DNA 48 203 -1 189 0 0 0 chr13 80059878 80059899 -21813270 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 328 253 161 31 chr13 80060761 80060923 -21812246 - MER5A DNA MER1_type -1 188 6 789 102 0 0 chr13 80061525 80061633 -21811536 - MER41B LTR ERV1 0 635 528 1527 161 125 7 chr13 80061633 80061937 -21811232 - MER41C LTR ERV1 -181 373 34 1310 168 95 42 chr13 80062404 80062689 -21810480 + AluJb SINE Alu 1 300 -12 267 266 51 0 chr13 80063649 80063728 -21809441 - MER5A DNA MER1_type -77 112 30 263 263 188 0 chr13 80063902 80063982 -21809187 + MIR3 SINE MIR 108 202 -6 646 279 158 57 chr13 80064138 80064632 -21808537 - L2 LINE L2 -1977 1337 794 2423 90 0 0 chr13 80065112 80065413 -21807756 + AluSx SINE Alu 1 301 -11 339 296 35 9 chr13 80066377 80066492 -21806677 - L2 LINE L2 -1 3312 3195 1414 186 41 34 chr13 80068880 80069171 -21803998 - AluJo SINE Alu -17 295 3 3428 191 66 42 chr13 80069642 80070584 -21802585 + L1MB8 LINE L1 5209 6172 -6 183 282 0 42 chr13 80071742 80071813 -21801356 - MIR SINE MIR -1 261 194 22 35 0 0 chr13 80071937 80071966 -21801203 + AT_rich Low_complexity Low_complexity 1 29 0 2101 133 0 7 chr13 80072814 80073115 -21800054 - AluSq SINE Alu -14 299 1 433 288 18 0 chr13 80073996 80074107 -21799062 - MER5A DNA MER1_type -76 113 1 252 278 0 56 chr13 80075181 80075289 -21797880 - L2 LINE L2 -5 3308 3207 462 301 21 0 chr13 80075346 80075489 -21797680 - L2 LINE L2 -649 2665 2520 435 399 44 15 chr13 80077634 80077975 -21795194 + L3 LINE CR1 190 540 -1037 364 127 0 0 chr13 80078561 80078616 -21794553 + Alu SINE Alu 1 55 -246 184 260 0 0 chr13 80079802 80079852 -21793317 + MIR SINE MIR 101 150 -112 509 309 0 11 chr13 80080043 80080221 -21792948 + MER69A DNA AcHobo 2 177 0 694 249 104 5 chr13 80080224 80080417 -21792752 + MIR SINE MIR 24 235 -27 23 33 0 0 chr13 80080429 80080459 -21792710 + AT_rich Low_complexity Low_complexity 1 30 0 262 180 22 79 chr13 80080513 80080602 -21792567 - L1ME LINE L1 -385 5736 5653 1706 168 7 3 chr13 80080720 80081005 -21792164 + AluJb SINE Alu 3 288 -24 243 0 0 0 chr13 80081011 80081038 -21792131 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 23 78 0 0 chr13 80081038 80081089 -21792080 + AT_rich Low_complexity Low_complexity 1 51 0 281 163 48 12 chr13 80081097 80081263 -21791906 + (TA)n Simple_repeat Simple_repeat 1 172 0 21 0 0 0 chr13 80081517 80081538 -21791631 + AT_rich Low_complexity Low_complexity 1 21 0 589 147 136 130 chr13 80082083 80082260 -21790909 - MER5B DNA MER1_type 0 178 1 26 30 0 0 chr13 80083473 80083506 -21789663 + AT_rich Low_complexity Low_complexity 1 33 0 488 266 51 28 chr13 80084239 80084416 -21788753 - MER58C DNA MER1_type -1 214 34 196 146 21 21 chr13 80085146 80085194 -21787975 + (TA)n Simple_repeat Simple_repeat 1 48 0 191 167 0 21 chr13 80085262 80085310 -21787859 + (TA)n Simple_repeat Simple_repeat 1 47 0 371 140 0 0 chr13 80085599 80085656 -21787513 - L1PA7 LINE L1 -11 6143 6087 2040 135 0 0 chr13 80085767 80086056 -21787113 - AluY SINE Alu -22 289 1 21 36 0 0 chr13 80086106 80086134 -21787035 + AT_rich Low_complexity Low_complexity 1 28 0 258 303 40 10 chr13 80086266 80086365 -21786804 + MIR SINE MIR 53 154 -108 24 53 0 0 chr13 80086750 80086788 -21786381 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr13 80086914 80086956 -21786213 + AT_rich Low_complexity Low_complexity 1 42 0 803 227 10 68 chr13 80088052 80088259 -21784910 + MER20 DNA MER1_type 16 210 -9 2264 102 7 0 chr13 80088749 80089053 -21784116 - AluSx SINE Alu -6 306 1 23 0 0 0 chr13 80091256 80091279 -21781890 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 80091600 80091623 -21781546 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr13 80093506 80093532 -21779637 + (A)n Simple_repeat Simple_repeat 1 26 0 2438 81 0 0 chr13 80094703 80095012 -21778157 + AluY SINE Alu 2 310 -1 207 0 0 0 chr13 80095015 80095038 -21778131 + (TA)n Simple_repeat Simple_repeat 2 24 0 318 167 0 0 chr13 80095938 80095998 -21777171 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 459 0 0 0 chr13 80096000 80096051 -21777118 + (GA)n Simple_repeat Simple_repeat 2 52 0 422 306 184 13 chr13 80096892 80097284 -21775885 + L1ME3 LINE L1 5493 5951 -211 236 217 50 0 chr13 80097468 80097528 -21775641 + (TATG)n Simple_repeat Simple_repeat 3 65 0 1782 179 0 3 chr13 80098069 80098354 -21774815 + AluJb SINE Alu 6 289 -23 2183 98 7 3 chr13 80098364 80098675 -21774494 + AluSp SINE Alu 1 313 0 183 319 0 21 chr13 80099720 80099767 -21773402 - L2 LINE L2 -31 3282 3237 263 309 84 80 chr13 80100621 80100883 -21772286 - L2 LINE L2 -181 3091 2829 386 333 61 61 chr13 80101000 80101378 -21771791 - L2 LINE L2 -13 3259 2882 313 335 50 6 chr13 80101900 80102079 -21771090 - L2 LINE L2 -1264 2050 1864 272 369 27 0 chr13 80102134 80102245 -21770924 + MER5C DNA MER1_type 11 124 -200 1751 212 11 5 chr13 80102669 80103046 -21770123 - L1P LINE L1 -2304 3842 3464 1152 202 8 4 chr13 80103047 80103309 -21769860 + L1P LINE L1 3199 3461 -2685 229 216 63 36 chr13 80105726 80105837 -21767332 - L1ME4a LINE L1 -1 6120 6007 331 298 96 84 chr13 80106511 80106937 -21766232 + Charlie8 DNA MER1_type 87 517 -1900 2264 110 0 0 chr13 80107038 80107329 -21765840 - AluSc SINE Alu -18 291 1 5878 28 0 0 chr13 80107364 80108073 -21765096 - L1PA2 LINE L1 -820 5326 4618 7052 19 0 1 chr13 80108073 80108912 -21764257 + L1PA2 LINE L1 5336 6155 0 320 292 75 25 chr13 80109144 80109264 -21763905 - MIR SINE MIR -21 241 116 312 189 0 0 chr13 80109369 80109422 -21763747 - MER33 DNA MER1_type -1 323 271 1924 101 4 8 chr13 80109423 80109681 -21763488 + AluSq SINE Alu 1 257 -56 345 275 11 0 chr13 80109681 80109772 -21763397 - MER33 DNA MER1_type -214 110 19 210 246 0 0 chr13 80111228 80111285 -21761884 + CT-rich Low_complexity Low_complexity 1 57 0 180 331 174 0 chr13 80113105 80113226 -21759943 - L2 LINE L2 -5 3267 3126 229 228 138 106 chr13 80114706 80114829 -21758340 + MIR SINE MIR 66 192 -70 24 32 0 0 chr13 80116455 80116486 -21756683 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr13 80116682 80116709 -21756460 + AT_rich Low_complexity Low_complexity 1 27 0 5910 140 34 38 chr13 80117750 80118971 -21754198 - L1MC1 LINE L1 -6 6327 5101 214 254 0 34 chr13 80119247 80119306 -21753863 - L2 LINE L2 -3 3310 3254 30 27 0 0 chr13 80120953 80120990 -21752179 + AT_rich Low_complexity Low_complexity 1 37 0 1107 285 91 55 chr13 80121323 80121919 -21751250 - L2 LINE L2 -1073 2241 1625 183 309 242 0 chr13 80121927 80122076 -21751093 - MIR SINE MIR -65 197 13 663 274 37 37 chr13 80123805 80124050 -21749119 + MIR SINE MIR 18 262 0 253 297 68 0 chr13 80124139 80124213 -21748956 - L2 LINE L2 -8 3305 3227 310 270 0 14 chr13 80124697 80124771 -21748398 + MIR3 SINE MIR 93 165 -43 863 258 31 0 chr13 80126066 80126260 -21746909 + MER58A DNA MER1_type 4 203 -21 765 278 89 32 chr13 80127482 80127730 -21745439 - MIR SINE MIR 0 262 1 580 247 9 0 chr13 80129070 80129230 -21743939 + L1ME2 LINE L1 5704 5867 -297 428 53 0 0 chr13 80129252 80129309 -21743860 - L1PA13 LINE L1 -487 5687 5631 3130 108 2 0 chr13 80129309 80129761 -21743408 + L1PA13 LINE L1 5691 6144 -19 23 68 0 0 chr13 80129783 80129827 -21743342 + AT_rich Low_complexity Low_complexity 1 44 0 652 325 26 1 chr13 80130233 80130462 -21742707 + MIR SINE MIR 30 259 -3 194 394 21 0 chr13 80130557 80130651 -21742518 + L2 LINE L2 3126 3221 -51 26 30 0 0 chr13 80131313 80131346 -21741823 + AT_rich Low_complexity Low_complexity 1 33 0 182 256 44 78 chr13 80132823 80132913 -21740256 + MIR SINE MIR 20 106 -102 237 289 70 44 chr13 80133055 80133169 -21740000 + MIR SINE MIR 117 233 -29 245 149 0 21 chr13 80133376 80133421 -21739748 - MLT1G LTR MaLR -2 588 545 1363 174 50 0 chr13 80133421 80133679 -21739490 + MLT1B LTR MaLR 1 271 -119 834 121 0 0 chr13 80133695 80133811 -21739358 - AluJb SINE Alu -196 116 1 584 280 28 47 chr13 80134018 80134229 -21738940 + MIR SINE MIR 8 214 -48 1241 226 29 6 chr13 80135274 80135705 -21737464 - MLT1D LTR MaLR 0 505 1 710 217 116 10 chr13 80136338 80136536 -21736633 + MER20 DNA MER1_type 1 219 0 880 296 112 36 chr13 80136650 80136952 -21736217 + L2 LINE L2 2370 2648 -666 2728 132 18 2 chr13 80136952 80137393 -21735776 - L1PA13 LINE L1 -13 6150 5703 880 296 112 36 chr13 80137393 80137645 -21735524 + L2 LINE L2 2648 2966 -348 266 311 107 0 chr13 80138444 80138547 -21734622 + L2 LINE L2 3157 3270 -2 208 313 0 0 chr13 80138563 80138611 -21734558 + L2 LINE L2 3210 3257 -15 30 59 0 0 chr13 80140295 80140346 -21732823 + AT_rich Low_complexity Low_complexity 1 51 0 956 231 30 118 chr13 80141058 80141283 -21731886 + MSTD LTR MaLR 1 171 -225 1936 122 7 11 chr13 80141283 80141569 -21731600 - AluSx SINE Alu -27 285 1 956 231 30 118 chr13 80141569 80141775 -21731394 + MSTD LTR MaLR 171 394 -2 1513 93 0 0 chr13 80141944 80142169 -21731000 - L1P LINE L1 -4715 1431 1207 7632 23 1 2 chr13 80142169 80143618 -21729551 + L1PA3 LINE L1 4705 6152 -3 354 146 98 15 chr13 80143643 80143730 -21729439 - LTR48B LTR ERV1 -47 580 488 197 0 0 67 chr13 80143733 80143763 -21729406 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1684 253 15 52 chr13 80144394 80144953 -21728216 - L1MC3 LINE L1 -1009 6776 6263 259 45 68 0 chr13 80144953 80144997 -21728172 + T-rich Low_complexity Low_complexity 3 49 0 25 0 0 0 chr13 80145002 80145027 -21728142 + AT_rich Low_complexity Low_complexity 1 25 0 1836 136 41 0 chr13 80145039 80145334 -21727835 - AluJb SINE Alu -3 309 3 786 239 60 4 chr13 80145339 80145573 -21727596 - L1MC3 LINE L1 -1495 6290 6044 488 226 0 8 chr13 80146268 80146392 -21726777 - L1MC3 LINE L1 -1619 6166 6044 1544 119 13 122 chr13 80146967 80147377 -21725792 - L1MC3 LINE L1 -609 5542 5291 21 36 0 0 chr13 80147557 80147585 -21725584 + AT_rich Low_complexity Low_complexity 1 28 0 199 394 118 8 chr13 80148722 80148849 -21724320 - L2 LINE L2 -21 3251 3111 351 248 71 18 chr13 80148860 80148973 -21724196 + L1ME LINE L1 5533 5651 -470 183 42 0 0 chr13 80150460 80150484 -21722685 + (T)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr13 80150901 80150930 -21722239 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr13 80151064 80151120 -21722049 + AT_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr13 80154410 80154444 -21718725 + AT_rich Low_complexity Low_complexity 1 34 0 321 282 15 30 chr13 80155342 80155473 -21717696 + (CATATA)n Simple_repeat Simple_repeat 1 129 0 312 171 8 43 chr13 80155544 80155661 -21717508 + (TG)n Simple_repeat Simple_repeat 2 114 0 227 232 0 63 chr13 80155760 80155855 -21717314 - L1MC4 LINE L1 -1340 6702 6614 2043 112 17 3 chr13 80156770 80157066 -21716103 - AluSq SINE Alu -13 300 1 448 291 8 8 chr13 80157254 80157388 -21715781 - L3 LINE CR1 -1009 568 435 263 277 0 32 chr13 80157983 80158077 -21715092 + MARNA DNA Mariner 394 484 -102 279 310 0 0 chr13 80158772 80158888 -21714281 + (TA)n Simple_repeat Simple_repeat 2 117 0 450 176 0 0 chr13 80158906 80158991 -21714178 + (TA)n Simple_repeat Simple_repeat 1 85 0 1780 170 0 17 chr13 80159555 80159902 -21713267 + L1MA4 LINE L1 5954 6294 -6 1215 210 58 56 chr13 80160804 80161180 -21711989 + L1MA4 LINE L1 5922 6298 -2 263 257 128 73 chr13 80161925 80162104 -21711065 - L2 LINE L2 0 3313 3125 302 226 12 36 chr13 80162641 80162725 -21710444 - L1MCa LINE L1 -4361 2065 1984 28 0 0 0 chr13 80164510 80164538 -21708631 + AT_rich Low_complexity Low_complexity 1 28 0 2182 114 7 0 chr13 80165332 80165630 -21707539 + AluSg SINE Alu 1 300 -10 5348 147 44 9 chr13 80165641 80166618 -21706551 - L1MA6 LINE L1 -6 6294 5284 1636 174 43 3 chr13 80166612 80166939 -21706230 + L1 LINE L1 4811 5150 -996 * 315 275 238 10 chr13 80167258 80167451 -21705718 + MIR SINE MIR 1 237 -25 1135 189 15 0 chr13 80168251 80168457 -21704712 + AluJb SINE Alu 84 292 -20 2280 30 0 0 chr13 80168491 80168759 -21704410 - L1PA3 LINE L1 -4 6151 5884 221 276 69 0 chr13 80168950 80169008 -21704161 + MIR SINE MIR 49 110 -152 21 0 0 0 chr13 80171146 80171167 -21702002 + AT_rich Low_complexity Low_complexity 1 21 0 182 325 175 8 chr13 80171321 80171441 -21701728 - MIR3 SINE MIR -68 140 1 201 259 129 35 chr13 80171530 80171646 -21701523 + L2 LINE L2 3118 3244 -69 893 328 67 17 chr13 80172406 80172870 -21700299 + L2 LINE L2 2827 3313 0 234 137 0 0 chr13 80173766 80173805 -21699364 + (TG)n Simple_repeat Simple_repeat 1 42 -9 2288 112 48 28 chr13 80173805 80174162 -21699007 + THE1B LTR MaLR 1 364 0 234 137 0 0 chr13 80174162 80174173 -21698996 + (TG)n Simple_repeat Simple_repeat 41 51 0 286 270 0 0 chr13 80175055 80175118 -21698051 - MER82 DNA MER2_type -588 65 3 243 0 0 0 chr13 80175118 80175145 -21698024 + (TG)n Simple_repeat Simple_repeat 2 28 0 429 269 115 0 chr13 80175358 80175488 -21697681 + MIR SINE MIR 48 192 -70 1322 227 72 63 chr13 80176101 80176169 -21697000 - MLT1C LTR MaLR 0 467 401 2403 50 0 0 chr13 80176169 80176482 -21696687 + AluY SINE Alu 1 313 0 1322 227 72 63 chr13 80176482 80176870 -21696299 - MLT1C LTR MaLR -66 401 6 216 0 0 0 chr13 80177191 80177215 -21695954 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3170 24 0 3 chr13 80177778 80178152 -21695017 - L1PA4 LINE L1 -5 6150 5778 253 319 84 47 chr13 80178645 80178858 -21694311 + L2 LINE L2 2262 2482 -832 22 0 0 0 chr13 80180530 80180552 -21692617 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 80180878 80180907 -21692262 + AT_rich Low_complexity Low_complexity 1 29 0 2181 109 7 0 chr13 80181524 80181817 -21691352 + AluSg SINE Alu 1 295 -15 2232 151 92 0 chr13 80182622 80183012 -21690157 + MSTB LTR MaLR 1 426 0 436 349 112 38 chr13 80183694 80184626 -21688543 + L2 LINE L2 1815 2815 -499 3235 143 124 88 chr13 80184840 80185637 -21687532 - LTR1B LTR ERV1 0 826 1 213 194 0 0 chr13 80185785 80185821 -21687348 + polypurine Low_complexity Low_complexity 2 37 0 963 201 35 40 chr13 80186168 80186367 -21686802 - MER20 DNA MER1_type 0 219 22 236 29 0 29 chr13 80187669 80187703 -21685466 + (GAATG)n Simple_repeat Simple_repeat 5 37 0 249 139 0 0 chr13 80188378 80188421 -21684748 + (T)n Simple_repeat Simple_repeat 1 43 0 455 205 36 0 chr13 80188543 80188655 -21684514 - L1MA8 LINE L1 -5 6286 6171 386 332 34 51 chr13 80188754 80188989 -21684180 - MIR SINE MIR -12 250 20 338 341 28 52 chr13 80188991 80189202 -21683967 + L3b LINE CR1 1203 1408 -175 903 198 60 179 chr13 80189310 80189963 -21683206 - MLT1G LTR MaLR 0 530 1 327 311 39 94 chr13 80191273 80191527 -21681642 + MIR SINE MIR 12 251 -11 333 0 0 0 chr13 80192565 80192602 -21680567 + (CA)n Simple_repeat Simple_repeat 2 38 0 201 357 102 10 chr13 80193275 80193373 -21679796 - L2 LINE L2 -17 3255 3149 650 172 22 0 chr13 80193374 80193508 -21679661 - Charlie5 DNA MER1_type -27 2585 2449 222 239 0 0 chr13 80193508 80193554 -21679615 + GA-rich Low_complexity Low_complexity 1 46 0 353 129 14 0 chr13 80193555 80193625 -21679544 + A-rich Low_complexity Low_complexity 5 75 0 33 0 0 0 chr13 80193744 80193777 -21679392 + AT_rich Low_complexity Low_complexity 1 33 0 307 265 0 78 chr13 80193804 80193906 -21679263 - MER5B DNA MER1_type -75 103 10 2095 119 7 7 chr13 80193984 80194294 -21678875 - AluSx SINE Alu -2 310 1 250 282 61 46 chr13 80194295 80194426 -21678743 - L2 LINE L2 -560 2754 2622 2480 158 29 5 chr13 80194489 80194907 -21678262 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr13 80195160 80195181 -21677988 + AT_rich Low_complexity Low_complexity 1 21 0 2285 102 0 19 chr13 80195199 80195512 -21677657 + AluSx SINE Alu 1 307 -5 373 315 137 15 chr13 80195535 80195732 -21677437 - MIR SINE MIR -37 225 5 26 0 0 0 chr13 80196292 80196318 -21676851 + AT_rich Low_complexity Low_complexity 1 26 0 291 310 21 49 chr13 80196348 80196490 -21676679 + MIR SINE MIR 10 147 -115 719 172 21 35 chr13 80196531 80196676 -21676493 - MLT1D LTR MaLR 0 505 363 195 114 0 0 chr13 80196676 80196711 -21676458 + (T)n Simple_repeat Simple_repeat 1 35 0 495 216 0 10 chr13 80196711 80196808 -21676361 - MLT1D LTR MaLR -145 360 265 1033 207 9 22 chr13 80196899 80197121 -21676048 + MER20 DNA MER1_type 1 219 0 499 256 24 126 chr13 80197121 80197318 -21675851 + MIR SINE MIR 11 188 -74 433 212 61 45 chr13 80197551 80197683 -21675486 + L1MC5 LINE L1 7302 7435 -526 2316 97 0 0 chr13 80197834 80198133 -21675036 + AluSx SINE Alu 1 299 -13 560 219 40 33 chr13 80198468 80198619 -21674550 - MIR SINE MIR 0 262 111 1427 115 5 14 chr13 80198926 80199135 -21674034 + AluSg SINE Alu 61 267 -43 22 80 0 0 chr13 80199443 80199493 -21673676 + AT_rich Low_complexity Low_complexity 1 50 0 21 82 0 0 chr13 80200044 80200093 -21673076 + AT_rich Low_complexity Low_complexity 1 49 0 237 214 45 34 chr13 80202085 80202174 -21670995 - L1MC4 LINE L1 -1339 6703 6614 * 239 204 0 82 chr13 80202099 80202197 -21670972 + L1MC4 LINE L1 6614 6703 -1339 430 148 49 31 chr13 80202269 80202431 -21670738 + (CATA)n Simple_repeat Simple_repeat 4 168 0 402 270 24 32 chr13 80203327 80203453 -21669716 - MIR SINE MIR -109 153 29 308 24 24 0 chr13 80203529 80203570 -21669599 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 954 145 12 0 chr13 80204826 80204992 -21668177 - L1MB4 LINE L1 -1 6179 6012 1710 154 18 3 chr13 80204994 80205279 -21667890 + AluJb SINE Alu 1 289 -23 23 33 0 0 chr13 80205279 80205309 -21667860 + AT_rich Low_complexity Low_complexity 1 30 0 266 140 70 0 chr13 80205309 80205366 -21667803 - L1MB1 LINE L1 -170 6019 5959 699 264 67 57 chr13 80208082 80208381 -21664788 + L1MEd LINE L1 5 306 -5813 430 184 48 0 chr13 80208479 80208582 -21664587 - MER63C DNA MER1_type -39 891 784 911 124 0 0 chr13 80208589 80208710 -21664459 + FLAM_C SINE Alu 4 124 -19 2214 208 88 7 chr13 80208717 80209261 -21663908 - MER63C DNA MER1_type -151 779 192 1562 216 16 20 chr13 80209261 80209694 -21663475 + MER89 LTR ERV1 1 530 -29 656 250 21 5 chr13 80209730 80209918 -21663251 - MER63C DNA MER1_type -739 191 1 621 265 140 77 chr13 80209922 80210314 -21662855 + L1MEd LINE L1 353 769 -5350 2386 50 0 4 chr13 80210515 80210795 -21662374 + AluY SINE Alu 1 279 -32 423 0 0 0 chr13 80210801 80210848 -21662321 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 349 296 171 0 chr13 80211398 80211550 -21661619 - LTR16A LTR ERVL -22 428 251 419 287 58 29 chr13 80212253 80212397 -21660772 + MLT1E LTR MaLR 25 176 -417 1725 170 0 7 chr13 80212397 80212680 -21660489 + AluJo SINE Alu 1 281 -31 419 287 58 29 chr13 80212680 80212709 -21660460 + MLT1E LTR MaLR 176 203 -390 * 684 199 19 31 chr13 80212683 80212844 -21660325 + MLT1E LTR MaLR 435 593 0 611 251 76 58 chr13 80214086 80214480 -21658689 - L1MC5 LINE L1 -103 7858 7458 585 83 0 0 chr13 80214559 80214643 -21658526 + (TCCA)n Simple_repeat Simple_repeat 2 85 0 246 287 244 6 chr13 80215059 80215223 -21657946 + MIR SINE MIR 57 259 -3 709 200 0 8 chr13 80215269 80215394 -21657775 + FLAM_C SINE Alu 1 124 -9 653 70 12 0 chr13 80215571 80215698 -21657471 - AluY SINE Alu 0 323 196 29 0 0 0 chr13 80215701 80215730 -21657439 + AT_rich Low_complexity Low_complexity 1 29 0 197 33 33 0 chr13 80215903 80215933 -21657236 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2002 102 0 0 chr13 80215944 80216209 -21656960 - AluSc SINE Alu -44 265 1 2120 125 3 0 chr13 80217154 80217457 -21655712 + AluSx SINE Alu 1 304 -8 265 294 0 0 chr13 80218569 80218637 -21654532 + (TA)n Simple_repeat Simple_repeat 2 69 0 344 256 85 34 chr13 80219054 80219230 -21653939 - MER5A DNA MER1_type -4 185 1 451 177 10 21 chr13 80219363 80219459 -21653710 - MER33 DNA MER1_type -1 362 268 2337 180 33 0 chr13 80219462 80219912 -21653257 + L1PA16 LINE L1 5686 6150 -16 856 231 123 0 chr13 80219924 80220175 -21652994 + L1MB5 LINE L1 5680 5961 -213 246 250 0 0 chr13 80220181 80220245 -21652924 + L1MB5 LINE L1 5898 5961 -213 * 279 244 13 0 chr13 80220237 80220315 -21652854 + L1MB5 LINE L1 5883 5961 -213 * 1025 247 25 7 chr13 80220307 80220586 -21652583 + L1MB5 LINE L1 5883 6166 -8 1263 193 16 4 chr13 80220595 80220849 -21652320 - MER33 DNA MER1_type -66 258 2 556 238 46 146 chr13 80221352 80221633 -21651536 - MIR SINE MIR 0 262 10 1019 207 9 22 chr13 80221634 80221856 -21651313 - MER20 DNA MER1_type 0 219 1 562 224 26 33 chr13 80222070 80222222 -21650947 + MLT1D LTR MaLR 355 505 0 228 293 28 28 chr13 80222258 80222364 -21650805 - MIR SINE MIR -110 152 47 1010 224 108 53 chr13 80322370 80322560 -21550609 + L1MD2 LINE L1 5930 6108 -251 297 0 0 0 chr13 80322560 80322593 -21550576 + (CA)n Simple_repeat Simple_repeat 2 34 0 1010 224 108 53 chr13 80322593 80322800 -21550369 + L1MD2 LINE L1 6108 6349 -10 189 147 0 0 chr13 80323855 80323889 -21549280 + (T)n Simple_repeat Simple_repeat 1 34 0 605 144 0 0 chr13 80323966 80324056 -21549113 - 5S rRNA rRNA -31 90 1 2001 111 73 26 chr13 80325088 80325430 -21547739 - THE1C LTR MaLR 0 375 18 1839 178 3 3 chr13 80326442 80326734 -21546435 + AluJo SINE Alu 3 294 -18 2380 53 0 23 chr13 80328462 80328763 -21544406 - AluY SINE Alu -14 297 4 654 164 0 0 chr13 80329465 80329587 -21543582 + (TG)n Simple_repeat Simple_repeat 2 123 0 180 299 104 122 chr13 80330672 80330836 -21542333 - L2 LINE L2 -74 3198 3038 296 319 64 0 chr13 80331396 80331490 -21541679 - L2 LINE L2 0 3313 3214 549 80 0 0 chr13 80332646 80332721 -21540448 + (GGAA)n Simple_repeat Simple_repeat 2 76 0 33 25 0 0 chr13 80333358 80333398 -21539771 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 80333597 80333619 -21539550 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 80334168 80334189 -21538980 + AT_rich Low_complexity Low_complexity 1 21 0 817 227 120 13 chr13 80335958 80336183 -21536986 - MIR SINE MIR 0 262 14 933 178 9 2 chr13 80336284 80336465 -21536704 + MER3 DNA MER1_type 1 136 -73 365 164 0 0 chr13 80336469 80336530 -21536639 + Charlie5 DNA MER1_type 32 92 -2520 783 105 7 59 chr13 80336536 80336689 -21536480 - L1MA9 LINE L1 0 6312 6168 724 271 43 0 chr13 80336955 80337143 -21536026 + MIR SINE MIR 15 210 -52 3306 221 159 25 chr13 80340290 80340402 -21532767 - L1MC4a LINE L1 -2 7806 7710 2417 117 75 8 chr13 80340402 80340554 -21532615 + MSTA LTR MaLR 1 141 -287 186 43 0 0 chr13 80340554 80340577 -21532592 + (TGAG)n Simple_repeat Simple_repeat 3 25 0 2417 117 75 8 chr13 80340577 80340825 -21532344 + MSTA LTR MaLR 141 428 0 3306 221 159 25 chr13 80340825 80341773 -21531396 - L1MC4a LINE L1 -98 7710 6604 26 30 0 0 chr13 80341792 80341825 -21531344 + AT_rich Low_complexity Low_complexity 1 33 0 560 186 47 51 chr13 80341833 80342042 -21531127 - L1MC4a LINE L1 -2 7806 6132 * 3581 238 77 33 chr13 80342029 80342773 -21530396 - L1MC4a LINE L1 -718 5615 5811 869 62 78 8 chr13 80342773 80342901 -21530268 - MER85 DNA T2_type -2 137 1 3581 238 77 33 chr13 80342901 80343309 -21529860 - L1MC4a LINE L1 -521 5812 5423 30 0 0 0 chr13 80343508 80343538 -21529631 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 80343853 80343874 -21529295 + AT_rich Low_complexity Low_complexity 1 21 0 543 255 163 16 chr13 80344344 80344528 -21528641 - MIR SINE MIR -49 213 3 186 284 216 0 chr13 80345247 80345349 -21527820 + MIR SINE MIR 86 209 -53 276 384 0 23 chr13 80346995 80347128 -21526041 - L2 LINE L2 0 3272 3143 1515 192 14 34 chr13 80347424 80347721 -21525448 + AluJo SINE Alu 7 297 -15 887 284 113 18 chr13 80347972 80348246 -21524923 + L2 LINE L2 2885 3208 -105 1948 131 58 45 chr13 80348246 80348605 -21524564 + THE1B LTR MaLR 1 364 0 887 284 113 18 chr13 80348605 80348718 -21524451 + L2 LINE L2 3208 3309 -4 314 328 32 116 chr13 80350482 80350766 -21522403 - L2 LINE L2 -79 3193 2934 25 0 0 0 chr13 80351901 80351926 -21521243 + AT_rich Low_complexity Low_complexity 1 25 0 319 203 51 25 chr13 80352052 80352131 -21521038 - MER94 DNA DNA -51 83 3 794 162 45 7 chr13 80352833 80352987 -21520182 - MER5A DNA MER1_type -29 160 1 192 246 18 18 chr13 80354478 80354535 -21518634 + MIR3 SINE MIR 120 176 -32 189 121 0 0 chr13 80356831 80356864 -21516305 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1804 179 19 22 chr13 80358018 80358382 -21514787 - MLT1A1 LTR MaLR -2 363 1 645 231 37 90 chr13 80358635 80358903 -21514266 + L2 LINE L2 3059 3312 -1 2119 121 3 0 chr13 80360686 80361008 -21512161 - AluSx SINE Alu 0 323 1 392 327 39 13 chr13 80362515 80362671 -21510498 + MIR3 SINE MIR 25 184 -24 213 425 8 0 chr13 80364121 80364241 -21508928 + MIR SINE MIR 33 153 -109 221 208 113 0 chr13 80364265 80364318 -21508851 - L2 LINE L2 0 3313 3255 186 337 10 40 chr13 80364575 80364676 -21508493 - L3 LINE CR1 -1090 487 390 196 309 95 0 chr13 80365154 80365238 -21507931 - L2 LINE L2 -25 3247 3156 322 329 87 47 chr13 80365739 80365888 -21507281 - MIR3 SINE MIR -52 156 2 279 71 0 0 chr13 80365919 80365961 -21507208 + (TC)n Simple_repeat Simple_repeat 2 43 0 587 71 12 0 chr13 80366019 80366104 -21507065 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 2430 119 5 24 chr13 80366519 80366890 -21506279 - THE1B LTR MaLR 0 364 1 11963 94 2 0 chr13 80366890 80368467 -21504702 - THE1B-int LTR MaLR 0 1580 1 2358 129 5 30 chr13 80368467 80368840 -21504329 - THE1B LTR MaLR 0 364 1 415 314 221 25 chr13 80368972 80369329 -21503840 + L3 LINE CR1 1148 1574 -3 458 243 9 9 chr13 80369423 80369534 -21503635 + MER117 DNA MER1_type 52 162 -35 2108 100 4 4 chr13 80370798 80371109 -21502060 - AluSc SINE Alu 0 311 1 239 358 39 60 chr13 80371143 80371475 -21501694 - L2 LINE L2 -56 3216 2892 202 206 0 0 chr13 80373670 80373704 -21499465 + (TG)n Simple_repeat Simple_repeat 2 35 0 704 160 20 27 chr13 80373704 80373854 -21499315 - L1MA10 LINE L1 -10 6324 6176 7934 174 18 22 chr13 80373906 80376372 -21496797 - L1MB1 LINE L1 -26 6163 3709 4586 204 26 6 chr13 80376369 80377424 -21495745 + L1MB1 LINE L1 2634 3709 -2437 * 799 227 217 11 chr13 80377439 80377716 -21495453 - MER2 DNA MER2_type -11 334 1 351 306 61 27 chr13 80378232 80378379 -21494790 + L2 LINE L2 3121 3272 0 1548 209 57 14 chr13 80379006 80379356 -21493813 - MLT1A2 LTR MaLR -9 365 1 2259 117 0 0 chr13 80380297 80380596 -21492573 - AluSx SINE Alu -11 301 3 676 265 122 24 chr13 80381483 80381568 -21491601 + L2 LINE L2 2999 3074 -239 2224 85 0 0 chr13 80381568 80381875 -21491294 - AluY SINE Alu 0 307 1 676 265 122 24 chr13 80381875 80382075 -21491094 + L2 LINE L2 3074 3313 0 279 268 27 60 chr13 80383127 80383245 -21489924 - MIR SINE MIR -35 173 47 2530 73 0 0 chr13 80383499 80383802 -21489367 + AluSg SINE Alu 1 303 -7 194 322 87 60 chr13 80384091 80384274 -21488895 - MIR SINE MIR -73 189 2 183 232 0 0 chr13 80384479 80384535 -21488634 + T-rich Low_complexity Low_complexity 1 56 0 254 321 193 19 chr13 80385954 80386166 -21487003 - MIR SINE MIR 0 262 14 575 175 0 0 chr13 80386583 80386680 -21486489 - MER82 DNA MER2_type -531 122 26 21 0 0 0 chr13 80386768 80386789 -21486380 + AT_rich Low_complexity Low_complexity 1 21 0 789 149 0 30 chr13 80386863 80386997 -21486172 + FLAM_C SINE Alu 2 131 -2 495 107 0 0 chr13 80386999 80387074 -21486095 + (GGGGA)n Simple_repeat Simple_repeat 4 78 0 1683 211 77 11 chr13 80387968 80388347 -21484822 + MER82 DNA MER2_type 250 653 0 1956 175 50 15 chr13 80388354 80388481 -21484688 + MER95 LTR ERV 14 135 -296 2544 106 20 0 chr13 80388481 80388838 -21484331 - THE1B LTR MaLR 0 364 1 1956 175 50 15 chr13 80388838 80389109 -21484060 + MER95 LTR ERV 135 426 -5 399 301 103 20 chr13 80389132 80389278 -21483891 - MIR SINE MIR -71 191 34 318 26 0 0 chr13 80390352 80390391 -21482778 + (TG)n Simple_repeat Simple_repeat 2 40 0 5933 149 32 16 chr13 80390423 80392173 -21480996 - L1MA9 LINE L1 -1 6311 4540 646 181 114 0 chr13 80393307 80393473 -21479696 + MER53 DNA DNA 4 188 -1 1434 188 34 0 chr13 80393811 80394104 -21479065 - MER33 DNA MER1_type -21 303 1 183 167 76 30 chr13 80394190 80394256 -21478913 - L2 LINE L2 -638 2676 2608 298 309 50 29 chr13 80394928 80395067 -21478102 - MIR SINE MIR -42 220 79 324 221 59 0 chr13 80395484 80395552 -21477617 + MIR SINE MIR 173 244 -18 2461 45 0 16 chr13 80395678 80395986 -21477183 + AluY SINE Alu 1 303 -8 905 135 12 6 chr13 80395988 80396151 -21477018 + L1MB2 LINE L1 6004 6167 -4 22 35 0 0 chr13 80396885 80396914 -21476255 + AT_rich Low_complexity Low_complexity 1 29 0 1004 144 48 0 chr13 80398392 80398579 -21474590 + L1PA14 LINE L1 5966 6161 0 260 200 62 15 chr13 80398605 80398670 -21474499 - MIR SINE MIR -119 143 76 220 276 71 71 chr13 80399432 80399530 -21473639 - L2 LINE L2 -18 3254 3157 25 51 0 0 chr13 80400513 80400552 -21472617 + AT_rich Low_complexity Low_complexity 1 39 0 336 284 5 0 chr13 80401239 80401325 -21471844 + MIR SINE MIR 34 121 -102 7188 47 6 1 chr13 80401344 80402749 -21470420 - L1PA5 LINE L1 0 6154 4746 6360 32 5 0 chr13 80402749 80403518 -21469651 + L1PA5 LINE L1 3962 4734 -1412 1521 161 0 54 chr13 80403555 80403835 -21469334 + AluJo SINE Alu 26 290 -22 224 370 34 24 chr13 80403935 80404230 -21468939 - L2 LINE L2 -1018 2296 1999 602 224 97 0 chr13 80404236 80404401 -21468768 + MER20 DNA MER1_type 3 183 -36 349 228 13 0 chr13 80404637 80404716 -21468453 + MER20 DNA MER1_type 137 216 -3 197 176 0 20 chr13 80404972 80405023 -21468146 + GA-rich Low_complexity Low_complexity 4 53 0 222 150 0 0 chr13 80406011 80406051 -21467118 + (T)n Simple_repeat Simple_repeat 1 40 0 5732 108 16 6 chr13 80406121 80406996 -21466173 + L1PB1 LINE L1 5263 6150 -1 2224 115 0 3 chr13 80407018 80407323 -21465846 + AluSq SINE Alu 3 306 -7 246 62 0 0 chr13 80408520 80408552 -21464617 + (A)n Simple_repeat Simple_repeat 1 32 0 433 265 96 36 chr13 80409261 80409705 -21463464 - L1ME LINE L1 -458 5712 5232 1122 84 7 0 chr13 80409775 80409971 -21463198 + L1PA8 LINE L1 6002 6198 0 233 343 143 9 chr13 80410182 80410287 -21462882 + L2 LINE L2 3150 3268 -4 1986 138 17 3 chr13 80412196 80412493 -21460676 + AluSx SINE Alu 1 301 -11 252 0 0 0 chr13 80412554 80412582 -21460587 + (A)n Simple_repeat Simple_repeat 1 28 0 214 340 7 0 chr13 80412585 80412689 -21460480 - MIR SINE MIR -63 145 55 460 322 110 4 chr13 80413236 80413463 -21459706 - MIR SINE MIR -11 251 1 288 384 0 0 chr13 80414725 80414811 -21458358 - L2 LINE L2 -27 3245 3160 22 0 0 0 chr13 80415383 80415405 -21457764 + AT_rich Low_complexity Low_complexity 1 22 0 242 341 12 0 chr13 80416045 80416127 -21457042 - L2 LINE L2 0 3272 3190 2594 112 5 8 chr13 80416562 80416938 -21456231 + THE1C LTR MaLR 1 375 0 276 30 0 0 chr13 80417437 80417450 -21455719 + (TG)n Simple_repeat Simple_repeat 1 46 0 276 30 0 0 chr13 80417450 80417483 -21455686 + (TG)n Simple_repeat Simple_repeat 2 34 0 1296 239 32 37 chr13 80417589 80417995 -21455174 - L2 LINE L2 0 3313 2910 374 258 147 37 chr13 80418152 80418213 -21454956 - L2 LINE L2 -482 2832 2779 1607 185 82 34 chr13 80418213 80418629 -21454540 + MER63B DNA MER1_type 1 436 0 374 258 147 37 chr13 80418629 80418757 -21454412 - L2 LINE L2 -535 2779 2622 24 0 0 0 chr13 80420579 80420603 -21452566 + AT_rich Low_complexity Low_complexity 1 24 0 217 282 162 8 chr13 80420671 80420788 -21452381 - MIR SINE MIR -13 249 115 265 356 35 35 chr13 80422779 80422894 -21450275 - L2 LINE L2 0 3272 3158 1725 162 3 23 chr13 80424554 80424857 -21448312 + AluJo SINE Alu 3 299 -13 2255 140 94 5 chr13 80425668 80426061 -21447108 + MSTA LTR MaLR 1 428 0 1108 304 36 16 chr13 80426824 80427212 -21445957 - MLT1I LTR MaLR 0 409 14 1122 262 75 62 chr13 80427717 80428245 -21444924 + LTR33A LTR ERVL 1 521 -2 25 31 0 0 chr13 80429771 80429803 -21443366 + AT_rich Low_complexity Low_complexity 1 32 0 287 312 23 58 chr13 80430148 80430321 -21442848 + MIR SINE MIR 54 220 -42 228 286 18 0 chr13 80431562 80431618 -21441551 - L2 LINE L2 -2 3311 3255 225 0 0 0 chr13 80431725 80431750 -21441419 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr13 80431873 80431902 -21441267 + AT_rich Low_complexity Low_complexity 1 29 0 239 265 68 77 chr13 80434306 80434423 -21438746 - L2 LINE L2 -214 3058 2943 518 333 65 70 chr13 80434790 80434887 -21438282 - L2 LINE L2 -458 2856 2760 2479 74 0 0 chr13 80434887 80435186 -21437983 + AluY SINE Alu 2 300 -11 518 333 65 70 chr13 80435186 80435761 -21437408 - L2 LINE L2 -554 2760 2187 474 230 43 99 chr13 80436267 80436428 -21436741 - MER5A DNA MER1_type -36 153 2 1616 131 0 0 chr13 80436526 80436762 -21436407 + MER46A DNA MER2_type 1 236 0 190 363 59 66 chr13 80437272 80437575 -21435594 - L2 LINE L2 -22 3250 2950 360 211 106 10 chr13 80437678 80437782 -21435387 + L1PB4 LINE L1 6042 6155 -1 414 274 65 0 chr13 80438938 80439062 -21434107 - MIR SINE MIR -28 234 103 27 0 0 0 chr13 80439366 80439393 -21433776 + AT_rich Low_complexity Low_complexity 1 27 0 1625 181 50 12 chr13 80439458 80439795 -21433374 - MER4D LTR ERV1 -5 898 549 1635 160 43 0 chr13 80439830 80440112 -21433057 - MER49 LTR ERV1 -629 294 1 2311 91 7 0 chr13 80441286 80441582 -21431587 - AluSc SINE Alu -11 298 1 25 75 0 0 chr13 80441597 80441650 -21431519 + AT_rich Low_complexity Low_complexity 1 53 0 1557 154 46 39 chr13 80442064 80442349 -21430820 + AluJb SINE Alu 1 287 -25 22 0 0 0 chr13 80442349 80442371 -21430798 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr13 80442862 80442902 -21430267 + (CA)n Simple_repeat Simple_repeat 2 41 0 321 26 0 0 chr13 80442994 80443032 -21430137 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr13 80443323 80443353 -21429816 + AT_rich Low_complexity Low_complexity 1 30 0 342 283 132 19 chr13 80443476 80443582 -21429587 + L2 LINE L2 3190 3307 -6 545 42 14 0 chr13 80443583 80443655 -21429514 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 217 377 0 53 chr13 80443868 80443982 -21429187 - MIR3 SINE MIR -18 190 83 274 49 0 0 chr13 80443984 80444025 -21429144 + L1PA16 LINE L1 6126 6166 0 346 328 32 16 chr13 80444600 80444725 -21428444 + L2 LINE L2 3138 3264 -8 427 287 165 16 chr13 80445845 80446033 -21427136 + MIR SINE MIR 46 261 -1 293 329 42 24 chr13 80446061 80446227 -21426942 + MIR3 SINE MIR 12 180 -28 180 0 0 0 chr13 80447133 80447153 -21426016 + (TTA)n Simple_repeat Simple_repeat 2 21 0 378 283 79 20 chr13 80447266 80447418 -21425751 + MIR SINE MIR 72 232 -30 238 341 181 28 chr13 80448517 80449054 -21424115 + L2 LINE L2 2359 2977 -337 24 0 0 0 chr13 80450328 80450352 -21422817 + AT_rich Low_complexity Low_complexity 1 24 0 311 364 18 0 chr13 80450761 80450871 -21422298 + MIR SINE MIR 28 139 -123 545 214 175 7 chr13 80452169 80452323 -21420846 + MER5A DNA MER1_type 9 188 -1 180 213 0 115 chr13 80453030 80453091 -21420078 + MIR SINE MIR 18 71 -137 610 309 137 27 chr13 80453402 80453955 -21419214 + L2 LINE L2 2055 2668 -646 288 326 74 32 chr13 80454104 80454294 -21418875 + L2 LINE L2 2665 2862 -452 278 321 186 0 chr13 80454395 80454535 -21418634 - MIR SINE MIR -65 197 32 221 198 12 0 chr13 80454818 80454904 -21418265 + (TA)n Simple_repeat Simple_repeat 1 87 0 576 277 52 38 chr13 80455523 80455736 -21417433 + MIR SINE MIR 8 223 -39 274 311 110 62 chr13 80455992 80456446 -21416723 - L2 LINE L2 -445 2869 2394 417 280 0 40 chr13 80457585 80457710 -21415459 + MIR SINE MIR 33 152 -110 2012 152 33 30 chr13 80457746 80458109 -21415060 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr13 80458436 80458457 -21414712 + AT_rich Low_complexity Low_complexity 1 21 0 1809 173 18 26 chr13 80458475 80458816 -21414353 + MER44D DNA MER2_type 1 608 -1 639 214 126 6 chr13 80458881 80459040 -21414129 - MER45A DNA AcHobo 0 178 1 428 284 85 53 chr13 80460161 80460223 -21412946 - MLT1K LTR MaLR -1 614 555 2165 125 19 32 chr13 80460223 80460592 -21412577 - THE1B LTR MaLR 0 364 1 428 284 85 53 chr13 80460592 80461079 -21412090 - MLT1K LTR MaLR -60 555 34 701 200 31 129 chr13 80461647 80461997 -21411172 - L1MC5 LINE L1 -35 7926 7611 203 372 18 26 chr13 80462538 80462651 -21410518 + MIR SINE MIR 29 140 -122 219 248 130 0 chr13 80462790 80462877 -21410292 - MIR SINE MIR -63 145 75 1636 128 0 11 chr13 80463408 80463691 -21409478 + L1PB1 LINE L1 5547 5790 -361 333 118 0 0 chr13 80463691 80463742 -21409427 + (TA)n Simple_repeat Simple_repeat 2 52 0 2587 96 8 0 chr13 80463742 80464107 -21409062 + L1PB1 LINE L1 5782 6149 -2 357 291 112 59 chr13 80466057 80466344 -21406825 - L2 LINE L2 -263 3009 2721 431 302 99 16 chr13 80466479 80466661 -21406508 - MIR SINE MIR -49 213 17 531 105 19 76 chr13 80466998 80467103 -21406066 + ORSL DNA AcHobo 1 99 -176 272 209 15 0 chr13 80467103 80467170 -21405999 + (TA)n Simple_repeat Simple_repeat 2 69 0 385 157 95 61 chr13 80467170 80467317 -21405852 + ORSL DNA AcHobo 63 214 -61 742 264 61 0 chr13 80470934 80471131 -21402038 + MER58A DNA MER1_type 1 209 -15 821 278 94 33 chr13 80471417 80471780 -21401389 + L3 LINE CR1 885 1269 -308 276 324 43 22 chr13 80471828 80471967 -21401202 + L3 LINE CR1 1435 1576 -1 1205 243 24 24 chr13 80473315 80473653 -21399516 - L1ME3 LINE L1 -16 6146 5809 805 214 0 19 chr13 80473663 80473822 -21399347 - MER58B DNA MER1_type -3 338 183 269 244 70 0 chr13 80473869 80473955 -21399214 - L1ME3 LINE L1 -351 5811 5720 839 247 32 20 chr13 80473983 80474234 -21398935 - L1ME3 LINE L1 -536 5634 5381 312 192 16 8 chr13 80474242 80474367 -21398802 + (TA)n Simple_repeat Simple_repeat 2 127 0 345 24 0 0 chr13 80474414 80474456 -21398713 + (GA)n Simple_repeat Simple_repeat 2 43 0 332 174 112 10 chr13 80474488 80474586 -21398583 - L1ME3 LINE L1 -826 5320 5213 21 36 0 0 chr13 80476349 80476377 -21396792 + AT_rich Low_complexity Low_complexity 1 28 0 2037 89 74 0 chr13 80476484 80476755 -21396414 - AluSg SINE Alu -19 291 1 309 338 25 13 chr13 80476934 80477091 -21396078 + L1ME4a LINE L1 5957 6115 -6 200 344 65 11 chr13 80477803 80477896 -21395273 - MIR SINE MIR -74 134 37 240 35 0 0 chr13 80479337 80479366 -21393803 + (GA)n Simple_repeat Simple_repeat 2 30 0 532 244 205 0 chr13 80479396 80479552 -21393617 - MER5A DNA MER1_type 0 189 2 1448 65 5 14 chr13 80479673 80479889 -21393280 + MER11A LTR ERVK 1053 1266 0 265 374 66 35 chr13 80479938 80480136 -21393033 - MIR3 SINE MIR -3 205 2 473 296 76 17 chr13 80480289 80480461 -21392708 - MIR SINE MIR -13 249 68 21 0 0 0 chr13 80481197 80481218 -21391951 + AT_rich Low_complexity Low_complexity 1 21 0 1787 153 11 11 chr13 80481249 80481536 -21391633 - AluJo SINE Alu -25 287 1 3510 167 6 20 chr13 80481536 80482230 -21390939 - L1MB4 LINE L1 -43 6137 5454 4908 151 9 25 chr13 80482363 80483729 -21389440 + L1PA16 LINE L1 4795 6166 0 22 56 0 0 chr13 80483955 80483991 -21389178 + AT_rich Low_complexity Low_complexity 1 36 0 2250 63 0 0 chr13 80484269 80484539 -21388630 + AluY SINE Alu 33 302 -9 616 269 8 0 chr13 80486059 80486193 -21386976 - L2 LINE L2 0 3313 3179 278 310 116 23 chr13 80487253 80487382 -21385787 - MIR3 SINE MIR -57 151 11 2332 81 0 0 chr13 80488198 80488493 -21384676 + AluY SINE Alu 1 295 -16 1918 114 50 0 chr13 80488500 80488781 -21384388 + AluSx SINE Alu 1 295 -17 1005 265 13 3 chr13 80488938 80489244 -21383925 + L1MC4 LINE L1 7581 7889 -153 341 201 29 86 chr13 80489408 80489547 -21383622 + L1MC4 LINE L1 7902 8032 -10 21 36 0 0 chr13 80490495 80490523 -21382646 + AT_rich Low_complexity Low_complexity 1 28 0 324 0 0 0 chr13 80491521 80491557 -21381612 + (TG)n Simple_repeat Simple_repeat 2 37 0 204 161 0 65 chr13 80492580 80492642 -21380527 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 598 155 113 18 chr13 80492667 80492835 -21380334 - MER53 DNA DNA -5 184 1 192 228 0 0 chr13 80492838 80492895 -21380274 + (TG)n Simple_repeat Simple_repeat 2 58 0 2259 102 0 3 chr13 80492895 80493218 -21379951 + L1PB1 LINE L1 5828 6149 -2 248 91 23 0 chr13 80493301 80493345 -21379824 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 179 0 0 chr13 80493357 80493396 -21379773 + (TATATG)n Simple_repeat Simple_repeat 5 43 0 534 276 13 13 chr13 80493995 80494151 -21379018 + MIR SINE MIR 86 241 -21 26 50 0 0 chr13 80494704 80494744 -21378425 + AT_rich Low_complexity Low_complexity 1 40 0 1609 209 30 19 chr13 80495809 80496178 -21376991 - MLT1A2 LTR MaLR -1 373 1 295 294 10 20 chr13 80496762 80496864 -21376305 + MIR3 SINE MIR 105 205 -3 286 318 35 0 chr13 80497900 80497985 -21375184 + MIR SINE MIR 98 185 -77 581 218 141 58 chr13 80498001 80498207 -21374962 + MIR SINE MIR 40 262 0 2138 138 3 0 chr13 80498333 80498631 -21374538 + AluSq SINE Alu 1 299 -14 2305 102 0 0 chr13 80500127 80500422 -21372747 + AluSg SINE Alu 1 295 -15 2167 116 42 33 chr13 80500753 80501114 -21372055 - THE1B LTR MaLR 0 364 1 282 263 52 62 chr13 80502216 80502410 -21370759 - L1MEd LINE L1 -4883 1236 1045 858 211 53 5 chr13 80504397 80504606 -21368563 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr13 80504666 80504688 -21368481 + AT_rich Low_complexity Low_complexity 1 22 0 1496 242 70 53 chr13 80505008 80505097 -21368072 + MER74B LTR ERVL 85 171 -451 1821 174 3 0 chr13 80505097 80505396 -21367773 + AluJo SINE Alu 1 300 -12 1496 242 70 53 chr13 80505396 80505835 -21367334 + MER74B LTR ERVL 171 622 0 350 261 45 18 chr13 80505890 80506001 -21367168 - MIR SINE MIR -78 184 71 323 328 23 30 chr13 80506234 80506365 -21366804 + MIR3 SINE MIR 10 139 -69 268 119 179 15 chr13 80506379 80506446 -21366723 + MADE1 DNA Mariner 1 78 -2 252 196 0 0 chr13 80506633 80506679 -21366490 - L2 LINE L2 0 3272 3227 390 288 117 18 chr13 80506766 80506929 -21366240 + MIR SINE MIR 83 261 -1 309 321 36 48 chr13 80506935 80507100 -21366069 - L2 LINE L2 -188 3084 2922 1212 173 58 73 chr13 80507166 80507479 -21365690 + AluJo SINE Alu 2 309 -3 30 0 0 0 chr13 80508345 80508375 -21364794 + AT_rich Low_complexity Low_complexity 1 30 0 1665 191 0 7 chr13 80508375 80508673 -21364496 - AluJo SINE Alu -16 296 1 2277 114 0 0 chr13 80508683 80508981 -21364188 - AluSx SINE Alu -13 299 2 184 0 77 77 chr13 80509671 80509710 -21363459 + T-rich Low_complexity Low_complexity 2 40 0 339 347 25 0 chr13 80510139 80510260 -21362909 - MIR SINE MIR -102 160 37 435 275 29 53 chr13 80511263 80511401 -21361768 - MIR SINE MIR -44 218 82 2283 85 0 0 chr13 80511401 80511707 -21361462 + AluSg SINE Alu 1 306 0 435 275 29 53 chr13 80511707 80511738 -21361431 - MIR SINE MIR -180 82 52 1816 222 78 19 chr13 80511928 80512441 -21360728 - MLT1H LTR MaLR -4 545 3 317 225 111 9 chr13 80515441 80515547 -21357622 + MIR SINE MIR 30 159 -62 476 265 139 35 chr13 80516260 80516490 -21356679 + MIR SINE MIR 7 260 -2 398 279 26 37 chr13 80517280 80517470 -21355699 - MER5A DNA MER1_type 0 189 2 2516 157 56 14 chr13 80518113 80518598 -21354571 - LTR45 LTR ERV1 0 525 21 1531 224 91 27 chr13 80519057 80519495 -21353674 - MLT1C LTR MaLR -1 466 1 321 309 42 34 chr13 80521904 80522083 -21351086 - MIR SINE MIR -63 145 17 306 286 152 12 chr13 80522135 80522306 -21350863 - MIR SINE MIR -23 239 45 1895 175 89 2 chr13 80522312 80522637 -21350532 - MER82 DNA MER2_type -6 647 281 180 111 0 0 chr13 80522637 80522664 -21350505 + (CTGTG)n Simple_repeat Simple_repeat 1 27 0 1895 175 89 2 chr13 80522664 80522733 -21350436 - MER82 DNA MER2_type -372 281 219 252 0 0 0 chr13 80522782 80522810 -21350359 + (TA)n Simple_repeat Simple_repeat 2 29 0 8253 118 11 11 chr13 80522818 80524119 -21349050 - HSMAR2 DNA Mariner 0 1302 1 250 204 21 32 chr13 80524119 80524206 -21348963 + (TA)n Simple_repeat Simple_repeat 2 87 0 919 184 21 21 chr13 80524206 80524396 -21348773 - MER82 DNA MER2_type -450 203 14 1489 147 19 11 chr13 80524807 80525072 -21348097 + L1MA6 LINE L1 6001 6267 -33 355 323 71 18 chr13 80525430 80525614 -21347555 + MIR3 SINE MIR 9 198 -57 24 0 0 0 chr13 80525698 80525722 -21347447 + AT_rich Low_complexity Low_complexity 1 24 0 264 320 234 0 chr13 80525928 80526056 -21347113 + MER91A DNA MER1_type 34 191 -5 974 267 69 27 chr13 80526174 80526549 -21346620 - MLT1I LTR MaLR -4 405 15 439 282 56 14 chr13 80526551 80526693 -21346476 + L3 LINE CR1 888 1035 -542 367 385 64 0 chr13 80528529 80528716 -21344453 + MIR SINE MIR 20 218 -44 212 329 29 14 chr13 80528765 80528835 -21344334 - MIR SINE MIR -60 148 78 379 272 140 0 chr13 80529336 80529472 -21343697 - MIR SINE MIR 0 262 108 321 284 0 73 chr13 80529592 80529701 -21343468 + L2 LINE L2 3213 3313 0 25 0 0 0 chr13 80530302 80530327 -21342842 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr13 80530402 80530424 -21342745 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr13 80531512 80531538 -21341631 + (T)n Simple_repeat Simple_repeat 1 26 0 2716 204 2 2 chr13 80531938 80532482 -21340687 + MER44D DNA MER2_type 7 605 0 1497 158 60 9 chr13 80533327 80533643 -21339526 + L1MB1 LINE L1 5834 6165 -3 388 265 0 20 chr13 80534376 80534474 -21338695 - MIR3 SINE MIR -2 206 111 220 291 101 0 chr13 80534720 80534799 -21338370 - MIR SINE MIR -77 185 99 371 211 11 0 chr13 80535795 80535890 -21337279 + CT-rich Low_complexity Low_complexity 1 96 0 1781 309 108 17 chr13 80536017 80536969 -21336200 - L2 LINE L2 -234 3079 2042 229 319 215 22 chr13 80538651 80538786 -21334383 - MER91A DNA MER1_type -35 161 1 492 318 56 5 chr13 80539011 80539150 -21334019 - L2 LINE L2 0 3313 3160 293 0 27 0 chr13 80539150 80539187 -21333982 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 492 318 56 5 chr13 80539187 80539242 -21333927 - L2 LINE L2 -153 3160 3109 270 312 132 16 chr13 80539238 80539427 -21333742 - L2 LINE L2 -387 2927 2717 * 1502 209 66 9 chr13 80539505 80539854 -21333315 + MLT1A2 LTR MaLR 6 374 0 2983 31 0 0 chr13 80540444 80540796 -21332373 - L1PA5 LINE L1 0 6154 5803 2401 31 0 0 chr13 80540796 80541085 -21332084 + L1PA5 LINE L1 5519 5807 -347 277 237 97 44 chr13 80542855 80542969 -21330200 + MIR3 SINE MIR 69 188 -20 26 0 0 0 chr13 80543396 80543422 -21329747 + AT_rich Low_complexity Low_complexity 1 26 0 7609 204 27 28 chr13 80543425 80543802 -21329367 - L1MA9 LINE L1 -38 6274 5898 1601 186 3 50 chr13 80543802 80544120 -21329049 + AluJo SINE Alu 1 303 -9 7609 204 27 28 chr13 80544120 80544240 -21328929 - L1MA9 LINE L1 -414 5898 5779 270 56 0 0 chr13 80544240 80544276 -21328893 + (TG)n Simple_repeat Simple_repeat 1 36 0 7609 204 27 28 chr13 80544276 80546350 -21326819 - L1MA9 LINE L1 -533 5779 3701 1063 182 0 6 chr13 80546350 80546526 -21326643 - FAM SINE Alu 0 175 1 7609 204 27 28 chr13 80546526 80546645 -21326524 - L1MA9 LINE L1 -2611 3701 3583 207 0 0 0 chr13 80547200 80547223 -21325946 + (GA)n Simple_repeat Simple_repeat 1 23 0 234 316 0 20 chr13 80548047 80548145 -21325024 - MIR SINE MIR -50 212 117 372 240 0 10 chr13 80548399 80548499 -21324670 + MER117 DNA MER1_type 78 176 -21 257 339 39 15 chr13 80548572 80548702 -21324467 - L2 LINE L2 -2 3311 3179 488 185 6 110 chr13 80549213 80549386 -21323783 + L1MC5 LINE L1 7759 7913 -48 3120 90 14 0 chr13 80549558 80550002 -21323167 + L1PA8 LINE L1 5718 6167 -5 25 31 0 0 chr13 80553048 80553080 -21320089 + AT_rich Low_complexity Low_complexity 1 32 0 453 233 8 0 chr13 80554423 80554528 -21318641 + MER5A DNA MER1_type 4 109 -80 305 328 8 41 chr13 80555281 80555403 -21317766 - L3 LINE CR1 -107 1470 1353 338 266 153 0 chr13 80557313 80557437 -21315732 - MLT1L LTR MaLR -121 494 352 581 235 180 9 chr13 80557709 80557926 -21315243 - MLT1L LTR MaLR -341 274 21 1820 191 42 31 chr13 80558045 80558407 -21314762 - L1MB3 LINE L1 -42 6141 5771 276 100 0 0 chr13 80558407 80558447 -21314722 + (CA)n Simple_repeat Simple_repeat 2 41 0 1820 191 42 31 chr13 80558447 80558561 -21314608 - L1MB3 LINE L1 -412 5771 5660 2289 151 16 3 chr13 80558838 80559222 -21313947 - MLT1B LTR MaLR 0 390 2 2158 108 3 3 chr13 80559518 80559805 -21313364 + AluSq SINE Alu 2 288 -25 280 241 0 0 chr13 80560608 80560662 -21312507 - L2 LINE L2 -1889 1425 1372 190 313 0 0 chr13 80560668 80560716 -21312453 + L2 LINE L2 3217 3264 -8 329 274 106 0 chr13 80560796 80560909 -21312260 - MER5B DNA MER1_type -53 125 1 2389 100 0 0 chr13 80560916 80561217 -21311952 + AluSx SINE Alu 1 301 -11 218 304 43 22 chr13 80561534 80561626 -21311543 - MIR SINE MIR 0 262 169 180 200 0 0 chr13 80562881 80562916 -21310253 - L3b LINE CR1 -196 1387 1353 2023 150 36 28 chr13 80563257 80563618 -21309551 - THE1B LTR MaLR 0 364 1 3399 66 30 2 chr13 80563708 80564149 -21309020 - MLT2A2 LTR ERVL 0 453 1 230 337 34 0 chr13 80564483 80564572 -21308597 + L2 LINE L2 2232 2323 -991 2530 61 0 0 chr13 80564652 80564993 -21308176 - AluY SINE Alu 0 341 1 218 310 124 26 chr13 80567552 80567665 -21305504 + MIR SINE MIR 116 239 -23 222 333 160 7 chr13 80568344 80568488 -21304681 - MIR3 SINE MIR -1 207 42 388 285 86 11 chr13 80568764 80569031 -21304138 + L1ME4a LINE L1 5640 5926 -195 2653 45 0 6 chr13 80569503 80569816 -21303353 - AluY SINE Alu 0 311 1 318 148 0 0 chr13 80569881 80569935 -21303234 + (CA)n Simple_repeat Simple_repeat 2 55 0 494 271 41 24 chr13 80570046 80570216 -21302953 + MIR SINE MIR 69 241 -21 228 226 0 0 chr13 80570251 80570313 -21302856 + CT-rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chr13 80570595 80570619 -21302550 + AT_rich Low_complexity Low_complexity 1 24 0 2541 81 0 0 chr13 80570964 80571293 -21301876 - AluY SINE Alu 0 329 1 220 344 66 26 chr13 80571338 80571489 -21301680 + MIR3 SINE MIR 3 159 -49 189 250 39 117 chr13 80571687 80571815 -21301354 - MIR SINE MIR -72 136 19 919 304 190 7 chr13 80573627 80574038 -21299131 - L2 LINE L2 -4 3309 2824 352 270 26 9 chr13 80574089 80574204 -21298965 + L1MC/D LINE L1 5122 5238 -908 1299 249 42 23 chr13 80574258 80574688 -21298481 + L1MC/D LINE L1 5291 5728 -2080 18745 111 9 5 chr13 80574994 80578781 -21294388 - L1PA8A LINE L1 0 6131 2337 25 0 0 0 chr13 80579488 80579513 -21293656 + AT_rich Low_complexity Low_complexity 1 25 0 1633 89 0 9 chr13 80579711 80579936 -21293233 - L1PA8 LINE L1 -7 6165 5943 1782 246 99 14 chr13 80580587 80580677 -21292492 - MLT1H1 LTR MaLR 0 555 474 2509 97 10 51 chr13 80580677 80581068 -21292101 - THE1C LTR MaLR 0 375 1 1782 246 99 14 chr13 80581068 80581481 -21291688 - MLT1H1 LTR MaLR -81 474 9 554 359 12 4 chr13 80581730 80581975 -21291194 - MIR SINE MIR -1 261 15 251 122 41 0 chr13 80583399 80583448 -21289721 - L1MB1 LINE L1 -13 6155 6105 25 65 0 0 chr13 80583520 80583566 -21289603 + AT_rich Low_complexity Low_complexity 1 46 0 226 317 49 12 chr13 80584255 80584337 -21288832 - L2 LINE L2 -20 3293 3209 185 0 0 39 chr13 80586528 80586554 -21286615 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 334 274 59 91 chr13 80586554 80586740 -21286429 - L2 LINE L2 -14 3299 3120 490 268 68 93 chr13 80586832 80587153 -21286016 + L2 LINE L2 2617 2929 -385 526 109 66 0 chr13 80587235 80587450 -21285719 + (TA)n Simple_repeat Simple_repeat 1 229 0 354 23 0 0 chr13 80587456 80587499 -21285670 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 221 250 106 100 chr13 80587502 80587662 -21285507 + L2 LINE L2 3152 3312 -1 558 282 80 11 chr13 80588421 80588609 -21284560 + Charlie1a DNA MER1_type 3 203 -1252 1693 171 9 40 chr13 80588667 80588989 -21284180 + AluJo SINE Alu 1 312 0 21 0 0 0 chr13 80589481 80589502 -21283667 + AT_rich Low_complexity Low_complexity 1 21 0 1264 181 30 23 chr13 80590060 80590325 -21282844 - L1PB4 LINE L1 0 6156 5890 193 271 102 0 chr13 80590477 80590536 -21282633 - MIR SINE MIR -121 141 77 38 61 0 0 chr13 80591135 80591201 -21281968 + AT_rich Low_complexity Low_complexity 1 66 0 2148 119 42 31 chr13 80591429 80591789 -21281380 - THE1B LTR MaLR 0 364 1 4016 148 9 8 chr13 80592235 80592899 -21280270 + L1PA15 LINE L1 5495 6159 -6 307 401 29 51 chr13 80593020 80593294 -21279875 + L1MEd LINE L1 115 382 -5737 676 283 95 62 chr13 80593297 80595037 -21278132 + L1MEd LINE L1 636 2438 -3691 433 164 0 0 chr13 80595063 80595130 -21278039 - Tigger7 DNA MER2_type -606 99 33 * 642 227 0 15 chr13 80595127 80595259 -21277910 + Tigger7 DNA MER2_type 42 171 -562 542 121 57 71 chr13 80595270 80595410 -21277759 + Tigger7 DNA MER2_type 2319 2456 -131 264 154 0 0 chr13 80595846 80595898 -21277271 + (CA)n Simple_repeat Simple_repeat 2 53 0 2785 7 0 0 chr13 80596995 80597297 -21275872 - AluYa5 SINE Alu -9 302 1 21 0 0 0 chr13 80597633 80597654 -21275515 + AT_rich Low_complexity Low_complexity 1 21 0 1393 104 85 9 chr13 80597674 80597886 -21275283 + MER30 DNA MER1_type 3 230 0 833 280 65 34 chr13 80598079 80598461 -21274708 + MLT1I LTR MaLR 1 394 -15 351 157 0 0 chr13 80600975 80601045 -21272124 + (TG)n Simple_repeat Simple_repeat 2 71 0 1553 142 0 0 chr13 80602271 80602490 -21270679 + AluSx SINE Alu 1 219 -93 26 30 0 0 chr13 80603449 80603482 -21269687 + AT_rich Low_complexity Low_complexity 1 33 0 753 123 0 23 chr13 80605684 80605814 -21267355 - L1MB1 LINE L1 -1 6167 6041 1778 175 24 0 chr13 80606127 80606419 -21266750 + AluJb SINE Alu 2 300 -12 3014 179 74 2 chr13 80607849 80608458 -21264711 - MER82 DNA MER2_type 0 653 1 206 222 74 0 chr13 80608463 80608517 -21264652 + MIR SINE MIR 137 194 -68 180 0 0 0 chr13 80609814 80609834 -21263335 + (T)n Simple_repeat Simple_repeat 1 20 0 5253 66 42 3 chr13 80610134 80610878 -21262291 + LTR17 LTR ERV1 1 773 -7 1718 163 45 42 chr13 80611102 80611457 -21261712 + MLT1A1 LTR MaLR 8 363 -2 409 259 60 24 chr13 80611752 80611918 -21261251 - L2 LINE L2 -1034 2280 2109 373 250 52 0 chr13 80611920 80612016 -21261153 + MIR SINE MIR 108 208 -54 969 168 0 6 chr13 80612192 80612353 -21260816 - AluJb SINE Alu -20 292 133 1580 195 15 35 chr13 80613816 80614183 -21258986 - MLT1A1 LTR MaLR -2 426 5 282 336 73 0 chr13 80614443 80614553 -21258616 + L2 LINE L2 3195 3312 -1 205 307 0 67 chr13 80614666 80614741 -21258428 - MIR SINE MIR -4 258 189 213 229 16 16 chr13 80615622 80615683 -21257486 + CT-rich Low_complexity Low_complexity 4 64 0 222 316 213 7 chr13 80616320 80616475 -21256694 - L2 LINE L2 -55 3217 3031 250 307 13 0 chr13 80616475 80616550 -21256619 - MER63B DNA MER1_type 0 436 361 1149 176 125 7 chr13 80616614 80616903 -21256266 - MER63B DNA MER1_type -80 356 34 424 287 112 11 chr13 80618296 80618484 -21254685 - MIR SINE MIR -49 213 7 352 198 123 0 chr13 80618999 80619080 -21254089 - MIR3 SINE MIR -3 205 115 22 0 0 0 chr13 80619128 80619150 -21254019 + AT_rich Low_complexity Low_complexity 1 22 0 473 340 58 10 chr13 80619753 80619959 -21253210 + MIR SINE MIR 1 216 -46 1844 161 35 25 chr13 80620000 80620366 -21252803 - THE1C LTR MaLR 0 375 6 189 0 0 0 chr13 80621307 80621328 -21251841 + (TTAGGG)n Simple_repeat Simple_repeat 4 24 0 374 278 139 63 chr13 80621341 80621564 -21251605 + MIR SINE MIR 22 261 -1 215 250 15 0 chr13 80623111 80623179 -21249990 + GA-rich Low_complexity Low_complexity 1 69 0 325 303 91 10 chr13 80624023 80624122 -21249047 - MIR3 SINE MIR -16 192 86 288 0 0 0 chr13 80624182 80624214 -21248955 + (CA)n Simple_repeat Simple_repeat 1 32 0 356 180 324 7 chr13 80624506 80624645 -21248524 - L1MC1 LINE L1 -9 6324 6142 327 293 24 41 chr13 80626107 80626230 -21246939 - MER5A DNA MER1_type -32 157 37 291 288 36 18 chr13 80626788 80626899 -21246270 + MIR3 SINE MIR 70 182 -26 350 73 0 18 chr13 80627719 80627774 -21245395 + (TCC)n Simple_repeat Simple_repeat 2 55 0 246 217 0 0 chr13 80628269 80628315 -21244854 + MIR SINE MIR 77 122 -86 566 310 35 17 chr13 80628320 80628494 -21244675 - MER5B DNA MER1_type 0 178 2 440 236 236 0 chr13 80628506 80628633 -21244536 + MER5A DNA MER1_type 4 160 -29 21 0 0 0 chr13 80628967 80628988 -21244181 + AT_rich Low_complexity Low_complexity 1 21 0 947 257 47 0 chr13 80629143 80629357 -21243812 + MER58A DNA MER1_type 1 224 0 437 297 80 47 chr13 80631556 80631768 -21241401 - MIR SINE MIR -31 231 13 702 247 81 5 chr13 80632108 80632294 -21240875 - MER58A DNA MER1_type -24 200 1 402 309 45 45 chr13 80632302 80632480 -21240689 + MER5B DNA MER1_type 1 178 0 801 204 44 11 chr13 80632495 80632676 -21240493 + MER5A DNA MER1_type 1 187 -2 276 277 18 54 chr13 80632808 80632920 -21240249 + MIR SINE MIR 100 207 -55 189 0 0 0 chr13 80634657 80634678 -21238491 + (CAA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr13 80635294 80635317 -21237852 + AT_rich Low_complexity Low_complexity 1 23 0 2135 126 0 0 chr13 80635415 80635708 -21237461 - AluSx SINE Alu -3 309 17 1776 169 7 10 chr13 80637039 80637340 -21235829 - AluJb SINE Alu -12 300 1 2219 114 3 0 chr13 80637727 80638033 -21235136 - AluSp SINE Alu -1 312 6 2237 107 3 3 chr13 80639708 80640008 -21233161 + AluSq SINE Alu 1 300 -13 275 296 51 0 chr13 80640391 80640489 -21232680 + MER5A DNA MER1_type 1 103 -86 1711 215 73 32 chr13 80640618 80641059 -21232110 + MLT1C LTR MaLR 4 462 -5 2035 134 0 3 chr13 80642144 80642436 -21230733 - AluJb SINE Alu -21 291 1 370 145 0 29 chr13 80642568 80642637 -21230532 - MER96B DNA MER1_type? -211 206 140 1618 226 31 82 chr13 80644185 80644672 -21228497 - MLT1C LTR MaLR -5 462 1 2113 101 10 7 chr13 80644846 80645144 -21228025 + AluSg SINE Alu 1 299 -11 434 288 166 0 chr13 80646758 80646897 -21226272 - MER5A DNA MER1_type 0 189 28 246 302 141 27 chr13 80647220 80647369 -21225800 + L2 LINE L2 2244 2409 -905 218 301 131 44 chr13 80647939 80648168 -21225001 + L2 LINE L2 2804 3052 -220 213 39 0 0 chr13 80648451 80648477 -21224692 + (TA)n Simple_repeat Simple_repeat 2 27 0 218 79 0 26 chr13 80648481 80648519 -21224650 + (TG)n Simple_repeat Simple_repeat 2 38 0 874 232 6 22 chr13 80648638 80648819 -21224350 + MER5B DNA MER1_type 1 178 0 224 209 33 33 chr13 80649003 80649094 -21224075 + (TA)n Simple_repeat Simple_repeat 2 92 0 309 89 0 0 chr13 80650368 80650413 -21222756 + (A)n Simple_repeat Simple_repeat 1 45 0 962 261 117 25 chr13 80650726 80651198 -21221971 + LTR33 LTR ERVL 4 518 -3 184 257 0 0 chr13 80652696 80652731 -21220438 - L2 LINE L2 -16 3297 3263 234 156 0 0 chr13 80653249 80653294 -21219875 + (ATG)n Simple_repeat Simple_repeat 3 47 0 2223 107 3 0 chr13 80653430 80653728 -21219441 - AluSq SINE Alu -14 299 1 349 236 139 30 chr13 80653807 80653972 -21219197 + Charlie8 DNA MER1_type 279 461 -1956 192 225 0 0 chr13 80654058 80654098 -21219071 + L2 LINE L2 3021 3060 -253 1146 83 7 0 chr13 80654180 80654325 -21218844 - L1PA10 LINE L1 -1 6167 6022 1769 202 119 29 chr13 80654488 80654934 -21218235 + MLT1E LTR MaLR 108 593 0 1381 126 0 67 chr13 80655217 80655248 -21217921 - Tigger4(Zombi) DNA MER2_type -1 2730 2698 1817 169 6 10 chr13 80655248 80655561 -21217608 + AluJo SINE Alu 1 312 0 1381 126 0 67 chr13 80655561 80655783 -21217386 - Tigger4(Zombi) DNA MER2_type -33 2698 2494 * 1762 161 7 4 chr13 80655768 80656047 -21217122 - Tigger4(Zombi) DNA MER2_type -2451 280 1 349 206 59 0 chr13 80656245 80656313 -21216856 + AluJo SINE Alu 87 158 -144 2146 91 0 0 chr13 80656350 80656626 -21216543 + AluY SINE Alu 25 300 -11 3188 83 17 34 chr13 80656817 80657287 -21215882 - L1PA10 LINE L1 -143 6025 5564 441 276 0 53 chr13 80657287 80657439 -21215730 + L2 LINE L2 3151 3294 -19 1047 183 0 6 chr13 80657650 80657825 -21215344 + FRAM SINE Alu 1 166 -10 291 313 97 21 chr13 80658001 80658145 -21215024 + L2 LINE L2 2730 2884 -430 479 320 40 0 chr13 80658740 80658890 -21214279 + L2 LINE L2 3117 3272 0 1981 116 11 0 chr13 80658944 80659220 -21213949 + AluSx SINE Alu 34 312 0 189 0 0 0 chr13 80661241 80661262 -21211907 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 337 284 24 39 chr13 80661718 80661845 -21211324 + MIR SINE MIR 12 136 -126 279 244 53 99 chr13 80662144 80662174 -21210995 + L2 LINE L2 3145 3175 -97 805 236 81 0 chr13 80662174 80662335 -21210834 + MER45A DNA AcHobo 5 178 0 279 244 53 99 chr13 80662335 80662435 -21210734 + L2 LINE L2 3175 3269 -3 1886 56 4 9 chr13 80663787 80664018 -21209151 - L1PA8 LINE L1 -10 6162 5933 267 205 26 13 chr13 80664086 80664164 -21209005 + L1ME3A LINE L1 6090 6168 -2 462 223 0 10 chr13 80664583 80664686 -21208483 + MER33 DNA MER1_type 11 112 -212 1145 202 42 66 chr13 80664688 80665020 -21208149 + MER33 DNA MER1_type 1 324 0 252 355 81 8 chr13 80665527 80665651 -21207518 + L2 LINE L2 3127 3259 -13 262 254 53 105 chr13 80665889 80666003 -21207166 - L2 LINE L2 0 3313 3206 246 293 35 0 chr13 80667996 80668054 -21205115 + L3 LINE CR1 1440 1499 -78 23 0 0 0 chr13 80668708 80668731 -21204438 + AT_rich Low_complexity Low_complexity 1 23 0 2490 77 0 0 chr13 80668792 80669090 -21204079 + AluSc SINE Alu 1 298 -11 201 291 13 38 chr13 80670880 80670959 -21202210 - L2 LINE L2 0 3313 3237 377 317 102 44 chr13 80671247 80671452 -21201717 + L2 LINE L2 3052 3268 -4 760 248 166 10 chr13 80671736 80672038 -21201131 - Charlie7 DNA MER1_type -2244 368 20 477 232 119 45 chr13 80672095 80672272 -21200897 + MIR SINE MIR 1 190 -72 464 283 44 6 chr13 80672504 80672663 -21200506 - L1MC4 LINE L1 -154 7888 7724 420 159 35 9 chr13 80672730 80672843 -21200326 + CT-rich Low_complexity Low_complexity 2 117 0 43450 31 25 1 chr13 80672899 80678921 -21194248 + L1PA3 LINE L1 1 6169 0 274 257 73 15 chr13 80678929 80679065 -21194104 - L1MC5 LINE L1 -543 7418 7275 259 349 34 98 chr13 80680329 80680382 -21192787 - L2 LINE L2 0 3272 3217 380 226 49 10 chr13 80680382 80680484 -21192685 - MER81 DNA DNA -4 110 5 259 349 34 98 chr13 80680484 80680725 -21192444 - L2 LINE L2 -55 3217 2997 2083 254 54 28 chr13 80681128 80681923 -21191246 - L1MC4 LINE L1 -1 8041 7226 1868 151 17 79 chr13 80681930 80682346 -21190823 - MLT1B LTR MaLR 0 390 1 901 128 0 23 chr13 80684147 80684280 -21188889 + AluJb SINE Alu 2 131 -181 1957 146 44 16 chr13 80684414 80684777 -21188392 - THE1C LTR MaLR -2 373 1 264 325 157 12 chr13 80685310 80685476 -21187693 - MIR3 SINE MIR 0 208 19 195 318 32 0 chr13 80685625 80685688 -21187481 - L2 LINE L2 -23 3249 3185 1941 120 0 0 chr13 80685691 80685949 -21187220 + AluSx SINE Alu 40 297 -15 236 325 26 0 chr13 80686090 80686167 -21187002 - L2 LINE L2 -528 2786 2708 189 107 0 0 chr13 80686611 80686639 -21186530 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 639 177 0 0 chr13 80686696 80686792 -21186377 + AluJo SINE Alu 1 96 -216 2307 79 0 3 chr13 80686792 80687084 -21186085 + AluY SINE Alu 21 311 0 1486 170 4 0 chr13 80687084 80687314 -21185855 + AluJo SINE Alu 82 312 0 561 211 143 68 chr13 80688190 80688265 -21184904 - MER5A DNA MER1_type 0 189 121 1290 203 82 12 chr13 80688265 80688424 -21184745 + MLT1A1 LTR MaLR 1 147 -218 315 0 0 0 chr13 80688424 80688459 -21184710 + (TC)n Simple_repeat Simple_repeat 2 36 0 1290 203 82 12 chr13 80688459 80688639 -21184530 + MLT1A1 LTR MaLR 147 364 -1 561 211 143 68 chr13 80688639 80688724 -21184445 - MER5A DNA MER1_type -68 121 17 368 185 0 12 chr13 80688787 80688868 -21184301 + MER53 DNA DNA 104 183 -6 1132 198 94 55 chr13 80689295 80689623 -21183546 - MLT1A2 LTR MaLR -28 346 6 2161 120 147 5 chr13 80691044 80691419 -21181750 - MSTA LTR MaLR 0 428 1 2734 153 48 6 chr13 80692319 80692842 -21180327 - L1MB3 LINE L1 -2 6181 5637 26 50 0 0 chr13 80692990 80693030 -21180139 + AT_rich Low_complexity Low_complexity 1 40 0 271 53 0 0 chr13 80693073 80693111 -21180058 - L1MB3 LINE L1 -549 5634 5597 2008 78 4 4 chr13 80693114 80693369 -21179800 - AluSp SINE Alu -5 308 54 345 96 19 0 chr13 80693371 80693423 -21179746 - AluS SINE Alu -206 97 45 345 96 19 0 chr13 80693417 80693469 -21179700 - AluS SINE Alu -206 97 45 * 347 45 0 0 chr13 80693463 80693507 -21179662 - AluS SINE Alu -206 97 54 763 72 0 0 chr13 80693509 80693606 -21179563 - AluS SINE Alu -216 97 1 780 186 6 36 chr13 80693606 80693773 -21179396 - L1MB3 LINE L1 -575 5608 5447 1052 253 0 0 chr13 80693833 80694074 -21179095 - MER46C DNA MER2_type -11 327 87 453 281 70 18 chr13 80696523 80696751 -21176418 + LTR33 LTR ERVL 4 243 -278 606 200 28 7 chr13 80696831 80696976 -21176193 + LTR33 LTR ERVL 374 521 0 362 271 52 52 chr13 80697095 80697250 -21175919 - MER91A DNA MER1_type -40 156 2 515 294 50 30 chr13 80697539 80697740 -21175429 + MIR SINE MIR 24 228 -34 2096 103 67 20 chr13 80698502 80698860 -21174309 + THE1C LTR MaLR 1 375 0 277 350 41 0 chr13 80699733 80699830 -21173339 + MIR SINE MIR 46 146 -116 275 350 70 14 chr13 80701768 80701911 -21171258 - MIR SINE MIR -92 170 20 201 200 129 29 chr13 80701988 80702058 -21171111 - MIR SINE MIR -102 160 84 * 475 246 19 126 chr13 80702057 80702272 -21170897 - L2 LINE L2 0 3313 3122 324 200 27 0 chr13 80702440 80702515 -21170654 - Cheshire DNA MER1_type 0 2420 2344 * 532 226 124 11 chr13 80702495 80702672 -21170497 - Cheshire DNA MER1_type -2132 288 92 966 184 6 0 chr13 80702672 80702830 -21170339 + AluJo SINE Alu 121 279 -33 269 82 20 0 chr13 80702830 80702879 -21170290 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2337 108 13 21 chr13 80703502 80703880 -21169289 - THE1C LTR MaLR 0 375 1 362 325 155 20 chr13 80709740 80710094 -21163075 - L2 LINE L2 0 3313 2912 2131 64 0 18 chr13 80710395 80710675 -21162494 - AluSg SINE Alu -35 275 1 309 252 138 0 chr13 80710677 80710800 -21162369 - MIR SINE MIR -73 189 50 1997 127 0 42 chr13 80711615 80711923 -21161246 + AluSg SINE Alu 1 295 -15 3112 112 89 4 chr13 80711945 80712428 -21160741 - MER1A DNA MER1_type -5 524 1 185 284 0 30 chr13 80712572 80712639 -21160530 - MIR SINE MIR -76 186 122 466 226 24 8 chr13 80713593 80713717 -21159452 - MER94 DNA DNA -8 126 1 648 211 0 69 chr13 80715046 80715221 -21157948 - MIR SINE MIR -34 228 66 724 259 61 68 chr13 80718069 80718614 -21154555 + MER34 LTR ERV1 1 541 -1 2274 192 58 36 chr13 80718821 80719373 -21153796 - MER82 DNA MER2_type -89 564 1 4509 205 55 10 chr13 80719836 80720831 -21152338 - MER45B DNA AcHobo 0 1040 1 554 184 18 0 chr13 80721697 80721806 -21151363 + MLT1E LTR MaLR 1 111 -482 927 135 86 0 chr13 80721806 80721969 -21151200 - THE1C LTR MaLR 0 375 199 391 281 5 113 chr13 80722707 80722910 -21150259 - MIR3 SINE MIR -25 183 3 21 57 0 0 chr13 80723097 80723132 -21150037 + AT_rich Low_complexity Low_complexity 1 35 0 347 75 28 65 chr13 80723143 80723250 -21149919 + (TATAA)n Simple_repeat Simple_repeat 2 104 0 1597 272 128 19 chr13 80723257 80724163 -21149006 - L2 LINE L2 -19 3294 2282 441 232 34 116 chr13 80724193 80724400 -21148769 + L2 LINE L2 3117 3306 -7 295 289 6 13 chr13 80724487 80724643 -21148526 - L1P LINE L1 -1087 5059 4905 2170 140 0 0 chr13 80725451 80725751 -21147418 + AluSx SINE Alu 1 300 -12 858 251 100 57 chr13 80726769 80727260 -21145909 - Tigger8 DNA MER2_type -99 567 56 4274 150 18 48 chr13 80728155 80728289 -21144880 + L1PB4 LINE L1 5343 5479 -677 948 65 0 0 chr13 80728289 80728413 -21144756 + (TA)n Simple_repeat Simple_repeat 2 125 0 1710 141 0 11 chr13 80728415 80728678 -21144491 - AluSx SINE Alu -30 282 23 4274 150 18 48 chr13 80728678 80729004 -21144165 + L1PB4 LINE L1 5480 5814 -342 2411 67 0 48 chr13 80729004 80729320 -21143849 + AluY SINE Alu 1 301 -10 4274 150 18 48 chr13 80729320 80729694 -21143475 + L1PB4 LINE L1 5814 6156 0 1708 169 17 61 chr13 80729736 80730080 -21143089 + MLT1B LTR MaLR 24 352 -38 431 251 25 115 chr13 80730082 80730325 -21142844 - MIR SINE MIR -34 228 8 25 0 0 0 chr13 80730601 80730626 -21142543 + AT_rich Low_complexity Low_complexity 1 25 0 1028 160 19 38 chr13 80730915 80730974 -21142195 + L1MB4 LINE L1 5971 6030 -150 3126 102 11 23 chr13 80730974 80731413 -21141756 + MER57B LTR ERV1 1 434 0 1028 160 19 38 chr13 80731413 80731566 -21141603 + L1MB4 LINE L1 6030 6179 -1 1941 144 0 0 chr13 80733060 80733344 -21139825 + AluSx SINE Alu 5 288 -24 27 0 0 0 chr13 80733344 80733371 -21139798 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 80734020 80734049 -21139120 + AT_rich Low_complexity Low_complexity 1 29 0 307 191 15 132 chr13 80737938 80738074 -21135095 - MIR3 SINE MIR -6 202 83 2341 115 0 0 chr13 80739222 80739534 -21133635 - AluSx SINE Alu 0 312 1 22 35 0 0 chr13 80739561 80739590 -21133579 + AT_rich Low_complexity Low_complexity 1 29 0 4500 146 39 8 chr13 80739901 80740627 -21132542 - L1MB3 LINE L1 -7 6176 5429 1222 152 13 27 chr13 80740850 80741074 -21132095 - AluJb SINE Alu -5 307 87 229 204 0 0 chr13 80741088 80741132 -21132037 - MER96B DNA MER1_type? -183 234 191 873 184 0 22 chr13 80741396 80741575 -21131594 - MER96B DNA MER1_type? -242 175 1 1402 167 40 0 chr13 80742648 80742875 -21130294 + MER46A DNA MER2_type 1 236 0 218 268 21 134 chr13 80743183 80743325 -21129844 + L2 LINE L2 3143 3268 -4 186 279 155 43 chr13 80743360 80743521 -21129648 + L2 LINE L2 3123 3301 -12 873 258 83 51 chr13 80743688 80744230 -21128939 + MLT1G LTR MaLR 11 555 0 796 246 16 5 chr13 80745079 80745120 -21128049 - MIR SINE MIR -67 195 156 2501 166 36 49 chr13 80745120 80745591 -21127578 - MLT1C LTR MaLR -2 465 1 796 246 16 5 chr13 80745591 80745740 -21127429 - MIR SINE MIR -106 156 3 2118 134 23 52 chr13 80745754 80746097 -21127072 - MER1B DNA MER1_type -4 333 1 1771 169 11 0 chr13 80746519 80746824 -21126345 + AluJo SINE Alu 1 308 0 2219 123 0 3 chr13 80747174 80747484 -21125685 + AluSx SINE Alu 1 309 -3 2008 164 33 22 chr13 80748497 80748856 -21124313 + MLT1A1 LTR MaLR 3 365 0 310 298 44 88 chr13 80749980 80750139 -21123030 + MIR SINE MIR 3 153 -55 247 318 0 0 chr13 80750229 80750295 -21122874 - L2 LINE L2 -3 3310 3245 896 208 99 141 chr13 80750509 80750593 -21122576 + L1MC4a LINE L1 5326 5412 -2396 2334 102 0 0 chr13 80750593 80750886 -21122283 - AluSq SINE Alu -20 293 1 896 208 99 141 chr13 80750886 80751418 -21121751 + L1MC4a LINE L1 5412 5916 -1892 987 167 0 19 chr13 80751685 80751847 -21121322 - MER2 DNA MER2_type -185 160 2 26 64 0 0 chr13 80751950 80751997 -21121172 + AT_rich Low_complexity Low_complexity 1 47 0 2500 115 58 9 chr13 80752125 80752472 -21120697 + THE1B LTR MaLR 1 364 0 1642 146 51 22 chr13 80753659 80753933 -21119236 + AluJo SINE Alu 1 282 -30 279 0 0 0 chr13 80753935 80753966 -21119203 + (GA)n Simple_repeat Simple_repeat 2 32 0 1136 235 14 0 chr13 80754025 80754242 -21118927 + MER58A DNA MER1_type 5 224 0 2176 136 0 0 chr13 80755401 80755710 -21117459 + AluSx SINE Alu 1 309 -3 1622 218 66 33 chr13 80755746 80756108 -21117061 + MLT1A2 LTR MaLR 1 374 0 2308 204 51 28 chr13 80756416 80756980 -21116189 + MER90 LTR ERV1 37 613 -1 2094 138 0 6 chr13 80757075 80757387 -21115782 + AluSg SINE Alu 1 310 0 1959 144 7 13 chr13 80757433 80757731 -21115438 - AluJb SINE Alu -15 297 2 1259 136 54 25 chr13 80757958 80758200 -21114969 - MER90 LTR ERV1 -326 249 1 186 305 61 12 chr13 80759045 80759127 -21114042 + L2 LINE L2 3209 3294 -19 940 168 0 0 chr13 80759188 80759337 -21113832 + FRAM SINE Alu 22 170 -6 612 311 51 0 chr13 80759718 80759895 -21113274 + MER5A DNA MER1_type 2 187 -2 925 172 12 12 chr13 80759897 80760060 -21113109 - AluJo SINE Alu -149 163 1 1958 141 26 20 chr13 80760779 80761085 -21112084 + AluSx SINE Alu 1 308 -4 1585 139 37 18 chr13 80761675 80761839 -21111330 - AluJo SINE Alu -1 311 139 2137 89 36 46 chr13 80761839 80762143 -21111026 - AluSx SINE Alu -11 301 1 1585 139 37 18 chr13 80762143 80762251 -21110918 - AluJo SINE Alu -173 139 34 2348 100 0 7 chr13 80762911 80763221 -21109948 + AluSc SINE Alu 1 308 -1 234 368 11 0 chr13 80763755 80763842 -21109327 + L2 LINE L2 3225 3312 -1 576 103 0 0 chr13 80763857 80763935 -21109234 + MADE1 DNA Mariner 1 78 -2 1783 191 58 89 chr13 80764471 80764522 -21108647 + L1MA9 LINE L1 5754 5805 -507 504 0 0 0 chr13 80764522 80764578 -21108591 + (TA)n Simple_repeat Simple_repeat 1 56 0 1783 191 58 89 chr13 80764578 80765064 -21108105 + L1MA9 LINE L1 5805 6274 -38 21 0 0 0 chr13 80765064 80765085 -21108084 + AT_rich Low_complexity Low_complexity 1 21 0 1991 154 90 6 chr13 80767845 80768201 -21104968 + MLT1B LTR MaLR 5 390 0 2311 110 0 0 chr13 80768346 80768654 -21104515 + AluSx SINE Alu 1 308 -4 219 69 0 0 chr13 80768659 80768688 -21104481 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 207 246 18 0 chr13 80769186 80769243 -21103926 + L2 LINE L2 2920 2977 -336 251 267 0 17 chr13 80770053 80770113 -21103056 - L2 LINE L2 -4 3309 3251 673 185 96 34 chr13 80770395 80770573 -21102596 + L1MC1 LINE L1 6145 6333 0 25 0 0 0 chr13 80770592 80770617 -21102552 + AT_rich Low_complexity Low_complexity 1 25 0 640 130 102 0 chr13 80770843 80770951 -21102218 + L1MC1 LINE L1 6215 6333 0 513 47 0 0 chr13 80771059 80771123 -21102046 + (TA)n Simple_repeat Simple_repeat 2 65 0 2322 96 6 10 chr13 80771123 80771435 -21101734 - AluSx SINE Alu -1 311 1 2470 143 6 3 chr13 80771684 80772049 -21101120 + MER47A DNA MER2_type 1 366 0 202 292 15 15 chr13 80773019 80773084 -21100085 - MIR SINE MIR -82 180 116 2800 170 36 29 chr13 80773863 80774411 -21098758 + L1MA10 LINE L1 5773 6324 -10 243 0 0 0 chr13 80774734 80774761 -21098408 + (T)n Simple_repeat Simple_repeat 1 27 0 1965 111 50 13 chr13 80775019 80775317 -21097852 - AluSq SINE Alu -4 309 1 2088 113 3 3 chr13 80775643 80775950 -21097219 - AluSx SINE Alu 0 307 1 1377 147 4 35 chr13 80775991 80776223 -21096946 + L1PA16 LINE L1 5942 6166 0 1671 99 22 0 chr13 80776817 80777039 -21096130 + AluSg/x SINE Alu 65 291 -21 290 308 0 17 chr13 80777828 80777945 -21095224 + CT-rich Low_complexity Low_complexity 3 117 0 382 282 24 40 chr13 80779225 80779349 -21093820 + MER5B DNA MER1_type 57 178 0 1531 221 99 38 chr13 80779411 80779887 -21093282 - MLT1D LTR MaLR 0 505 1 233 210 97 0 chr13 80779962 80780024 -21093145 - L2 LINE L2 0 3313 3246 759 292 125 6 chr13 80780116 80780452 -21092717 + L2 LINE L2 2116 2491 -823 406 190 83 74 chr13 80780499 80780620 -21092549 + MER5C DNA MER1_type 3 124 -200 568 254 252 35 chr13 80780816 80781233 -21091936 + L2 LINE L2 2791 3309 -4 1981 145 0 7 chr13 80781544 80781848 -21091321 + AluJb SINE Alu 1 302 -10 24 67 0 0 chr13 80781863 80781908 -21091261 + AT_rich Low_complexity Low_complexity 1 45 0 203 285 43 97 chr13 80781998 80782058 -21091111 - L3 LINE CR1 -351 1226 1164 2140 117 3 7 chr13 80782058 80782357 -21090812 - AluSx SINE Alu -14 298 1 203 285 43 97 chr13 80782357 80782482 -21090687 - L3 LINE CR1 -413 1164 1051 435 277 44 7 chr13 80782560 80782697 -21090472 - MLT1I LTR MaLR -15 394 253 1739 210 12 59 chr13 80783037 80783446 -21089723 - MLT1B LTR MaLR 0 390 1 258 320 24 32 chr13 80783522 80783647 -21089522 - L3 LINE CR1 -854 723 600 251 254 0 0 chr13 80784092 80784147 -21089022 + L2 LINE L2 3217 3271 -1 187 234 182 13 chr13 80784304 80784381 -21088788 + L3b LINE CR1 1178 1267 -316 255 211 273 33 chr13 80784518 80784698 -21088471 - MIR SINE MIR -13 249 21 1783 159 4 4 chr13 80786987 80787263 -21085906 + AluJb SINE Alu 2 277 -35 844 162 12 0 chr13 80787277 80787444 -21085725 + (CA)n Simple_repeat Simple_repeat 2 170 0 527 310 33 11 chr13 80787924 80788108 -21085061 + MIR SINE MIR 72 259 -3 237 65 0 0 chr13 80788315 80788346 -21084823 + (CA)n Simple_repeat Simple_repeat 2 32 0 2272 129 0 0 chr13 80788776 80789085 -21084084 + AluSx SINE Alu 1 309 -3 1854 203 95 12 chr13 80789704 80790104 -21083065 - MLT1C LTR MaLR -34 433 1 258 288 64 40 chr13 80790424 80790549 -21082620 - MIR3 SINE MIR 0 208 81 327 289 35 0 chr13 80791227 80791369 -21081800 - L1ME4a LINE L1 -1 6120 5974 415 172 71 49 chr13 80791837 80791987 -21081182 + L1ME1 LINE L1 5864 5981 -185 525 216 0 0 chr13 80792025 80792141 -21081028 + L1MA10 LINE L1 6210 6325 -9 1858 164 52 0 chr13 80792150 80792582 -21080587 + L1MC2 LINE L1 5836 6343 -1 248 250 56 56 chr13 80792589 80792697 -21080472 + Charlie8 DNA MER1_type 81 188 -2229 694 267 71 59 chr13 80793222 80793654 -21079515 - L1ME4a LINE L1 -32 6089 5615 1883 169 0 0 chr13 80793654 80793950 -21079219 - AluJb SINE Alu -16 296 1 694 267 71 59 chr13 80793950 80794035 -21079134 - L1ME4a LINE L1 -506 5615 5532 23 54 0 0 chr13 80794212 80794249 -21078920 + AT_rich Low_complexity Low_complexity 1 37 0 2083 137 10 0 chr13 80794748 80795047 -21078122 - AluSx SINE Alu -10 302 1 2007 178 37 3 chr13 80795570 80795924 -21077245 + MLT2D LTR ERVL 1 366 -48 2802 120 38 2 chr13 80795936 80796360 -21076809 - Tigger2 DNA MER2_type 0 2718 2280 437 159 0 14 chr13 80796358 80796427 -21076742 - Tigger2 DNA MER2_type -2649 69 2 * 819 194 15 51 chr13 80796893 80797216 -21075953 + MLT1A1 LTR MaLR 1 363 -11 265 231 0 0 chr13 80797238 80797290 -21075879 + LTR30 LTR ERV1 1 52 -670 1364 77 16 157 chr13 80797290 80797577 -21075592 + LTR12 LTR ERV1 57 2005 -433 358 200 59 23 chr13 80797577 80797700 -21075469 + LTR30 LTR ERV1 544 647 -75 1318 101 167 0 chr13 80797700 80797898 -21075271 + LTR12 LTR ERV1 484 714 0 203 167 0 0 chr13 80798003 80798039 -21075130 + (TG)n Simple_repeat Simple_repeat 2 37 0 3636 132 37 12 chr13 80798423 80798746 -21074423 - L1MA9 LINE L1 -6 6306 5960 2265 119 90 3 chr13 80798746 80799081 -21074088 - THE1B LTR MaLR 0 364 1 3636 132 37 12 chr13 80799081 80799354 -21073815 - L1MA9 LINE L1 -352 5960 5695 2050 60 0 12 chr13 80799571 80799860 -21073309 + AluY SINE Alu 34 319 0 242 304 0 59 chr13 80799874 80799976 -21073193 + MIR SINE MIR 104 199 -63 374 305 0 25 chr13 80800049 80800167 -21073002 - L2 LINE L2 0 3313 3199 328 82 33 0 chr13 80800170 80800231 -21072938 + (GA)n Simple_repeat Simple_repeat 2 64 0 261 314 138 27 chr13 80800949 80801356 -21071813 + L2 LINE L2 1726 2177 -1137 337 287 20 0 chr13 80801547 80801648 -21071521 + MLT1C LTR MaLR 6 108 -359 1833 142 14 10 chr13 80801648 80801936 -21071233 + AluJb SINE Alu 1 289 -23 389 212 0 10 chr13 80801936 80802035 -21071134 + G-rich Low_complexity Low_complexity 3 100 0 1255 198 88 32 chr13 80802047 80802386 -21070783 + MLT1C LTR MaLR 110 467 0 2334 98 0 16 chr13 80802904 80803222 -21069947 - AluSq SINE Alu 0 313 1 186 398 131 6 chr13 80803436 80803612 -21069557 + L2 LINE L2 3070 3267 -5 295 227 10 93 chr13 80803785 80803882 -21069287 + MIR3 SINE MIR 106 194 -14 1594 226 105 27 chr13 80804222 80804668 -21068501 + MLT1E LTR MaLR 113 593 0 3594 190 83 67 chr13 80804786 80805900 -21067269 + L1MC4a LINE L1 6678 7808 0 2388 84 0 0 chr13 80806057 80806353 -21066816 - AluY SINE Alu -15 296 1 257 260 80 10 chr13 80806728 80806828 -21066341 - MIR SINE MIR -1 261 155 222 349 0 0 chr13 80807011 80807074 -21066095 + polypurine Low_complexity Low_complexity 2 64 0 875 281 50 48 chr13 80807088 80807505 -21065664 + L3 LINE CR1 1153 1570 -7 230 185 19 19 chr13 80807889 80807943 -21065226 + MLT1I LTR MaLR 1 54 -355 228 234 52 26 chr13 80807998 80808075 -21065094 + MLT1J2 LTR MaLR 96 174 -276 * 682 216 65 13 chr13 80808059 80808212 -21064957 + MLT1I LTR MaLR 249 409 0 627 266 17 28 chr13 80808214 80808391 -21064778 + MIR SINE MIR 87 261 -1 346 255 184 46 chr13 80808508 80808747 -21064422 + L2 LINE L2 1883 2154 -1160 * 539 265 6 48 chr13 80808743 80808909 -21064260 - MER5B DNA MER1_type -19 159 1 1522 201 48 0 chr13 80808917 80809226 -21063943 + MER33 DNA MER1_type 1 324 0 260 287 61 17 chr13 80809233 80809348 -21063821 + L2 LINE L2 2172 2291 -1023 421 253 107 87 chr13 80809553 80809916 -21063253 + L2 LINE L2 2626 3002 -311 2268 114 0 0 chr13 80809916 80810213 -21062956 - AluSx SINE Alu -15 297 1 421 253 107 87 chr13 80810213 80810279 -21062890 + L2 LINE L2 3002 3065 -248 417 20 0 0 chr13 80810379 80810429 -21062740 + (TG)n Simple_repeat Simple_repeat 2 51 0 865 186 0 0 chr13 80810440 80810580 -21062589 - FRAM SINE Alu -35 141 2 250 337 61 10 chr13 80810599 80810697 -21062472 + L2 LINE L2 3137 3239 -33 288 253 95 11 chr13 80810731 80810826 -21062343 - MIR SINE MIR 0 262 160 240 111 0 0 chr13 80811275 80811311 -21061858 + (CA)n Simple_repeat Simple_repeat 2 37 0 207 296 44 29 chr13 80811444 80811571 -21061598 - L2 LINE L2 -217 3055 2926 2306 111 3 3 chr13 80812259 80812565 -21060604 + AluSq SINE Alu 2 307 -6 1983 161 5 40 chr13 80813440 80813812 -21059357 + MLT1A1 LTR MaLR 7 365 0 268 382 21 54 chr13 80813820 80814061 -21059108 - L2 LINE L2 -652 2662 2430 2963 121 39 2 chr13 80815059 80815472 -21057697 + MSTC LTR MaLR 1 428 0 273 321 41 71 chr13 80815816 80816084 -21057085 + L2 LINE L2 653 912 -2402 852 219 67 119 chr13 80816084 80816514 -21056655 + MLT1D LTR MaLR 1 408 -97 707 153 0 0 chr13 80816515 80816613 -21056556 + AluJ/FLAM SINE Alu 2 99 -213 694 80 9 18 chr13 80816623 80816735 -21056434 + (GGAA)n Simple_repeat Simple_repeat 3 113 0 327 356 7 30 chr13 80816736 80816871 -21056298 + L2 LINE L2 1127 1258 -2056 1038 341 54 51 chr13 80816875 80817893 -21055276 + L2 LINE L2 2258 3282 -31 511 299 71 5 chr13 80818110 80818294 -21054875 + MER91A DNA MER1_type 1 196 0 779 251 82 9 chr13 80819633 80819864 -21053305 + MIR SINE MIR 15 262 0 2273 102 13 0 chr13 80819942 80820247 -21052922 + AluSx SINE Alu 1 309 -3 1987 185 44 20 chr13 80820288 80820663 -21052506 - L1MB8 LINE L1 -1 6177 5790 3569 62 30 18 chr13 80820663 80821102 -21052067 + MLT2A1 LTR ERVL 1 444 0 1987 185 44 20 chr13 80821102 80821132 -21052037 - L1MB8 LINE L1 -388 5790 5762 337 290 43 59 chr13 80821275 80821457 -21051712 - MIR3 SINE MIR -64 144 4 2203 160 40 60 chr13 80821726 80822177 -21050992 + LTR47A LTR ERVL 11 452 0 2335 159 58 52 chr13 80823270 80823658 -21049511 + MLT1C LTR MaLR 1 394 -73 2066 141 0 3 chr13 80823658 80823955 -21049214 - AluSq SINE Alu -17 296 1 2335 159 58 52 chr13 80823955 80824030 -21049139 + MLT1C LTR MaLR 394 467 0 954 146 6 38 chr13 80824258 80824416 -21048753 + AluJo SINE Alu 1 153 -159 341 290 50 0 chr13 80824745 80824845 -21048324 - L2 LINE L2 0 3272 3168 1459 163 29 8 chr13 80824950 80825196 -21047973 + AluJo SINE Alu 44 294 -18 37749 92 9 9 chr13 80825207 80831352 -21041817 + L1PA6 LINE L1 11 6154 0 2007 144 17 0 chr13 80832058 80832356 -21040813 + AluSx SINE Alu 3 305 -7 39 22 0 0 chr13 80832690 80832736 -21040433 + AT_rich Low_complexity Low_complexity 1 46 0 863 180 0 0 chr13 80833467 80833595 -21039574 - FLAM_A SINE Alu -5 128 1 2421 167 28 26 chr13 80834936 80835214 -21037955 + MSTB LTR MaLR 1 282 -144 2238 110 0 3 chr13 80835214 80835515 -21037654 + AluSx SINE Alu 1 300 -12 2421 167 28 26 chr13 80835515 80835661 -21037508 + MSTB LTR MaLR 282 426 0 220 158 0 0 chr13 80836499 80836537 -21036632 - L2 LINE L2 -2 3311 3274 714 307 22 9 chr13 80836760 80836991 -21036178 - MIR SINE MIR -15 247 14 6364 124 23 19 chr13 80838983 80839775 -21033394 + L1MA4 LINE L1 5265 6052 -248 2296 122 0 0 chr13 80839775 80840079 -21033090 + AluSq SINE Alu 1 304 -9 6364 124 23 19 chr13 80840079 80840133 -21033036 + L1MA4 LINE L1 6052 6104 -196 452 87 145 0 chr13 80840133 80840202 -21032967 + MADE1 DNA Mariner 2 80 0 6364 124 23 19 chr13 80840202 80840380 -21032789 + L1MA4 LINE L1 6104 6295 -5 1973 129 0 43 chr13 80840753 80841055 -21032114 - AluSx SINE Alu -23 289 1 192 325 0 12 chr13 80842055 80842135 -21031034 - L3b LINE CR1 -194 1389 1311 2279 114 0 0 chr13 80842306 80842604 -21030565 + AluSx SINE Alu 1 298 -14 348 298 10 0 chr13 80842768 80842872 -21030297 + MIR SINE MIR 158 262 0 2498 184 90 12 chr13 80843804 80844315 -21028854 + MER89 LTR ERV1 5 555 -4 2343 178 72 26 chr13 80844466 80845052 -21028117 + MER67B LTR ERV1 1 658 -3 4147 144 24 21 chr13 80845117 80845677 -21027492 + MER50 LTR ERV1 1 565 -169 2209 113 0 0 chr13 80845677 80845970 -21027199 - AluSx SINE Alu -19 293 1 4147 144 24 21 chr13 80845970 80846118 -21027051 + MER50 LTR ERV1 565 711 -23 1850 119 98 0 chr13 80846261 80846538 -21026631 + AluSx SINE Alu 1 304 -8 180 0 0 0 chr13 80846538 80846558 -21026611 + (TA)n Simple_repeat Simple_repeat 2 21 0 255 200 50 0 chr13 80846774 80846834 -21026335 + MIR SINE MIR 129 191 -71 287 322 124 0 chr13 80846975 80847152 -21026017 - L3 LINE CR1 -86 1491 1293 592 197 114 0 chr13 80847426 80847558 -21025611 - MER5A DNA MER1_type -42 147 1 711 0 0 0 chr13 80848203 80848276 -21024893 - tRNA-Phe-TTC tRNA tRNA -3 73 1 195 211 0 0 chr13 80848914 80848952 -21024217 - L2 LINE L2 -10 3303 3266 548 40 0 13 chr13 80849088 80849164 -21024005 + (TGGA)n Simple_repeat Simple_repeat 1 75 0 303 79 0 0 chr13 80849306 80849344 -21023825 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 2327 104 0 7 chr13 80850235 80850544 -21022625 + AluSx SINE Alu 1 307 -5 1829 158 90 117 chr13 80850756 80851301 -21021868 + MER119 DNA MER1_type 40 569 -14 614 133 108 42 chr13 80851703 80851823 -21021346 - FLAM_A SINE Alu -2 131 4 273 119 0 0 chr13 80851894 80851936 -21021233 + (CA)n Simple_repeat Simple_repeat 1 42 0 3184 229 77 61 chr13 80851973 80853077 -21020092 + L1MC4 LINE L1 6906 8027 -15 1578 171 10 48 chr13 80853079 80853221 -21019948 + AluJb SINE Alu 1 147 -165 2107 107 17 10 chr13 80853221 80853519 -21019650 + AluSq SINE Alu 1 300 -13 1578 171 10 48 chr13 80853519 80853685 -21019484 + AluJb SINE Alu 147 297 -15 30 0 0 0 chr13 80853699 80853729 -21019440 + AT_rich Low_complexity Low_complexity 1 30 0 210 277 107 62 chr13 80853764 80853876 -21019293 - MIR3 SINE MIR -6 202 86 1637 197 49 39 chr13 80853877 80854262 -21018907 - MLT1B LTR MaLR -1 389 1 237 245 131 93 chr13 80855509 80855746 -21017423 + LTR48B LTR ERV1 386 631 -13 2434 89 0 0 chr13 80855850 80856152 -21017017 - AluSq SINE Alu -11 302 1 303 267 52 0 chr13 80856905 80857014 -21016155 - MIR SINE MIR -75 133 19 4328 104 60 0 chr13 80857215 80857813 -21015356 + MER51A LTR ERV1 1 634 0 476 283 98 56 chr13 80857965 80858610 -21014559 + L1MC4 LINE L1 7268 8042 0 199 286 26 13 chr13 80859790 80859867 -21013302 - MIR SINE MIR -72 190 113 12165 112 68 20 chr13 80859910 80861230 -21011939 - Tigger1 DNA MER2_type 0 2418 1162 2287 99 10 3 chr13 80861230 80861533 -21011636 - AluSq SINE Alu -8 305 1 12165 112 68 20 chr13 80861533 80861834 -21011335 - Tigger1 DNA MER2_type -1256 1162 877 1798 124 65 31 chr13 80861834 80862124 -21011045 + AluSx SINE Alu 1 300 -12 12165 112 68 20 chr13 80862124 80862411 -21010758 - Tigger1 DNA MER2_type -1541 877 418 1096 143 12 0 chr13 80862411 80862579 -21010590 - AluSg/x SINE Alu -9 303 134 2388 87 0 3 chr13 80862579 80862878 -21010291 - AluSq SINE Alu -15 298 1 2444 164 29 2 chr13 80862878 80863294 -21009875 - Tigger1 DNA MER2_type -1991 427 1 226 246 8 8 chr13 80863774 80863858 -21009311 + GA-rich Low_complexity Low_complexity 1 84 0 2240 93 10 7 chr13 80865004 80865305 -21007864 - AluSq SINE Alu -11 302 1 238 0 0 0 chr13 80865354 80865382 -21007787 - HY3 scRNA scRNA -1 100 73 2313 96 0 10 chr13 80865384 80865685 -21007484 - AluSp SINE Alu -15 298 1 275 336 149 52 chr13 80865829 80866311 -21006858 + L2 LINE L2 2181 2709 -605 575 254 118 9 chr13 80866311 80866531 -21006638 + L1ME4a LINE L1 5801 6044 -77 311 315 49 7 chr13 80866600 80866743 -21006426 + L2 LINE L2 2708 2856 -458 582 189 117 0 chr13 80866785 80866896 -21006273 - MER5A DNA MER1_type -59 130 7 3499 166 94 10 chr13 80866900 80867609 -21005560 - L1MB4 LINE L1 -4 6176 5408 328 325 118 6 chr13 80867658 80867827 -21005342 + L2 LINE L2 2892 3079 -193 1557 112 147 12 chr13 80867914 80868172 -21004997 + AluSc SINE Alu 1 293 -16 295 228 0 0 chr13 80868178 80868235 -21004934 + HAL1 LINE L1 341 397 -2110 492 292 111 44 chr13 80868371 80868686 -21004483 + LTR16B LTR ERVL 129 464 0 765 307 51 23 chr13 80868693 80869045 -21004124 + HERV16 LTR ERVL 8 369 -4627 251 338 12 0 chr13 80869116 80869196 -21003973 - HERV16 LTR ERVL -4403 593 513 625 157 20 10 chr13 80869348 80869450 -21003719 + FLAM_C SINE Alu 30 132 -11 308 266 55 31 chr13 80869458 80869586 -21003583 + HERV16 LTR ERVL 2287 2417 -2579 2059 145 71 38 chr13 80869615 80870007 -21003162 - MSTA LTR MaLR -21 407 3 2331 330 77 27 chr13 80870013 80870907 -21002262 + HERV16 LTR ERVL 2447 3295 -2190 2064 168 62 16 chr13 80870907 80871277 -21001892 + MLT1B LTR MaLR 1 387 -3 2331 330 77 27 chr13 80871277 80872246 -21000923 + HERV16 LTR ERVL 3295 4404 -1081 28 29 0 0 chr13 80872597 80872632 -21000537 + AT_rich Low_complexity Low_complexity 1 35 0 219 146 0 0 chr13 80873414 80873455 -20999714 + (A)n Simple_repeat Simple_repeat 1 41 0 1910 159 10 10 chr13 80873839 80874141 -20999028 - AluJo SINE Alu -9 303 2 454 237 83 18 chr13 80874466 80874635 -20998534 - MER104 DNA MER2_type 0 180 1 246 325 44 79 chr13 80875268 80875374 -20997795 - MIR SINE MIR -3 259 162 2285 95 0 3 chr13 80875374 80875670 -20997499 + AluSc SINE Alu 1 295 -14 246 325 44 79 chr13 80875670 80875766 -20997403 - MIR SINE MIR -100 162 64 204 250 0 67 chr13 80878238 80878298 -20994871 - MIR SINE MIR -124 84 29 737 121 61 38 chr13 80879414 80879546 -20993623 + AluSq/x SINE Alu 2 136 -177 27 0 0 0 chr13 80879744 80879771 -20993398 + AT_rich Low_complexity Low_complexity 1 27 0 224 286 71 0 chr13 80879860 80879930 -20993239 - MIR SINE MIR -29 233 159 * 666 206 296 0 chr13 80879927 80880184 -20992985 - L2 LINE L2 -352 2962 2630 276 264 90 42 chr13 80880184 80880328 -20992841 + HAL1 LINE L1 2351 2501 -6 2225 101 7 3 chr13 80880471 80880767 -20992402 + AluSp SINE Alu 1 297 -16 3526 78 18 5 chr13 80881091 80881529 -20991640 + MLT2A1 LTR ERVL 1 444 0 35 54 0 0 chr13 80882044 80882100 -20991069 + AT_rich Low_complexity Low_complexity 1 56 0 1064 261 63 6 chr13 80882383 80882732 -20990437 + L1MC5 LINE L1 5255 5623 -2185 937 139 17 40 chr13 80882733 80882906 -20990263 + MLT1B LTR MaLR 2 170 -220 1546 230 39 73 chr13 80882919 80883616 -20989553 + L1MC5 LINE L1 6431 7107 -854 1919 116 46 7 chr13 80883616 80883901 -20989268 - AluSx SINE Alu -16 296 1 1546 230 39 73 chr13 80883901 80883981 -20989188 + L1MC5 LINE L1 7107 7188 -773 2097 132 0 7 chr13 80884069 80884372 -20988797 + AluSx SINE Alu 1 301 -11 636 268 24 16 chr13 80884771 80885017 -20988152 + L1M4 LINE L1 2190 2437 -3709 438 287 64 5 chr13 80885018 80885220 -20987949 + L1M4 LINE L1 2607 2820 -3326 183 80 0 0 chr13 80885652 80885677 -20987492 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr13 80886859 80886881 -20986288 + AT_rich Low_complexity Low_complexity 1 22 0 576 121 0 0 chr13 80887142 80887225 -20985944 + AluSx SINE Alu 11 93 -220 1959 92 8 4 chr13 80887226 80887488 -20985681 + AluSq SINE Alu 1 263 -50 26 0 0 0 chr13 80887600 80887626 -20985543 + AT_rich Low_complexity Low_complexity 1 26 0 1408 81 0 127 chr13 80887628 80887864 -20985305 + AluSx SINE Alu 86 291 -21 1527 186 14 7 chr13 80887864 80888139 -20985030 - AluJo SINE Alu -35 277 1 22 56 0 0 chr13 80888242 80888278 -20984891 + AT_rich Low_complexity Low_complexity 1 36 0 253 227 61 0 chr13 80889121 80889187 -20983982 - MIR SINE MIR -10 252 183 2173 110 0 14 chr13 80889275 80889567 -20983602 + AluSx SINE Alu 1 288 -24 395 332 35 22 chr13 80890282 80890514 -20982655 + L2 LINE L2 2350 2584 -730 263 287 167 20 chr13 80891037 80891187 -20981982 - L2 LINE L2 -19 3294 3123 337 300 11 0 chr13 80891587 80891677 -20981492 + MIR3 SINE MIR 111 201 -7 497 275 68 44 chr13 80893349 80893600 -20979569 - L1MC4 LINE L1 -15 8027 7771 261 57 0 0 chr13 80894045 80894080 -20979089 - HSMAR1 DNA Mariner -1252 35 1 233 183 39 144 chr13 80894182 80894286 -20978883 - MER20 DNA MER1_type -125 94 2 560 277 114 0 chr13 80894326 80894510 -20978659 - MIR SINE MIR -6 256 52 582 155 10 0 chr13 80894932 80895035 -20978134 + L1MB4 LINE L1 6073 6176 -4 297 202 64 0 chr13 80895971 80896065 -20977104 + L1ME LINE L1 5677 5776 -345 186 43 0 0 chr13 80896214 80896237 -20976932 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 909 121 8 0 chr13 80896997 80897129 -20976040 - FLAM_C SINE Alu 0 133 1 208 253 0 127 chr13 80897433 80897473 -20975696 + L3 LINE CR1 1508 1535 -42 2141 106 33 7 chr13 80897473 80897774 -20975395 - AluSx SINE Alu -3 309 1 208 253 0 127 chr13 80897774 80897812 -20975357 + L3 LINE CR1 1535 1576 -1 223 274 137 55 chr13 80898614 80898760 -20974409 - MER5B DNA MER1_type -1 177 20 534 273 208 0 chr13 80899505 80899721 -20973448 - MLT1L LTR MaLR -7 608 348 25 31 0 0 chr13 80900837 80900869 -20972300 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr13 80902026 80902049 -20971120 + (T)n Simple_repeat Simple_repeat 1 23 0 722 229 49 27 chr13 80902154 80902337 -20970832 - MER5A DNA MER1_type -2 187 1 1688 180 0 16 chr13 80903321 80903627 -20969542 - AluJo SINE Alu -11 301 1 366 316 74 22 chr13 80903631 80903825 -20969344 - MIR SINE MIR -41 221 19 22 35 0 0 chr13 80904471 80904500 -20968669 + AT_rich Low_complexity Low_complexity 1 29 0 29 70 0 0 chr13 80905978 80906035 -20967134 + AT_rich Low_complexity Low_complexity 1 57 0 1800 77 0 5 chr13 80906334 80906555 -20966614 - AluSq SINE Alu -92 221 2 331 225 75 67 chr13 80907064 80907085 -20966084 - MIR SINE MIR -8 254 235 1622 181 20 13 chr13 80907085 80907383 -20965786 + AluJo SINE Alu 1 300 -12 331 225 75 67 chr13 80907383 80907481 -20965688 - MIR SINE MIR -27 235 134 2127 79 52 0 chr13 80908232 80908523 -20964646 - AluY SINE Alu -5 306 1 1828 125 77 0 chr13 80908523 80908795 -20964374 - AluSp SINE Alu -20 293 1 371 259 209 7 chr13 80908908 80909047 -20964122 - L1MC4a LINE L1 -1766 6042 5876 23 54 0 0 chr13 80909083 80909120 -20964049 + AT_rich Low_complexity Low_complexity 1 37 0 333 301 153 27 chr13 80909186 80909369 -20963800 - L1MC4a LINE L1 -1737 6071 5866 27 0 0 0 chr13 80909885 80909912 -20963257 + AT_rich Low_complexity Low_complexity 1 27 0 28 91 0 0 chr13 80909954 80910031 -20963138 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chr13 80912100 80912122 -20961047 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr13 80912168 80912199 -20960970 + AT_rich Low_complexity Low_complexity 1 31 0 446 172 0 6 chr13 80914054 80914144 -20959025 + L1MC4 LINE L1 7716 8036 -6 427 293 117 46 chr13 80914146 80914475 -20958694 + L2 LINE L2 2699 3042 -271 1510 248 25 69 chr13 80914485 80915006 -20958163 + MLT2F LTR ERVL 1 498 -165 483 222 82 22 chr13 80915201 80915336 -20957833 + L2 LINE L2 3170 3312 -1 389 240 172 16 chr13 80916065 80916257 -20956912 - L1MC4a LINE L1 -1884 5924 5703 1470 268 49 55 chr13 80916337 80916986 -20956183 + MER21B LTR ERV1 62 706 -157 411 281 100 15 chr13 80917109 80917620 -20955549 - L1MC4a LINE L1 -803 5343 4906 423 268 66 66 chr13 80917696 80917939 -20955230 - L1MC4a LINE L1 -1371 4775 4533 290 303 46 10 chr13 80918189 80918384 -20954785 - L1MC4a LINE L1 -1769 4377 4176 815 175 78 68 chr13 80918427 80918736 -20954433 + L1M4 LINE L1 3100 3411 -2735 340 148 82 0 chr13 80918743 80918804 -20954365 - LTR40a LTR ERVL 0 519 454 * 894 288 94 16 chr13 80918800 80919119 -20954050 - LTR40c LTR ERVL -121 344 1 697 234 30 5 chr13 80919122 80919319 -20953850 + L1M4 LINE L1 3417 3618 -2528 373 182 0 91 chr13 80919319 80919429 -20953740 + L1M4 LINE L1 4861 4960 -1186 428 88 29 15 chr13 80919443 80919511 -20953658 - THE1B LTR MaLR 0 364 296 240 35 0 0 chr13 80919512 80919541 -20953628 + (TG)n Simple_repeat Simple_repeat 1 29 0 1767 150 0 21 chr13 80919653 80919933 -20953236 - AluJb SINE Alu -37 275 2 603 253 45 7 chr13 80919948 80920217 -20952952 + L1ME4a LINE L1 2936 3214 -2932 739 238 128 74 chr13 80920249 80920585 -20952584 + L1ME4a LINE L1 4698 5014 -1156 2590 46 0 7 chr13 80920585 80920888 -20952281 + AluY SINE Alu 1 301 -10 739 238 128 74 chr13 80920888 80920993 -20952176 + L1ME4a LINE L1 5014 5112 -1058 2332 80 6 55 chr13 80920993 80921320 -20951849 + AluSx SINE Alu 1 311 -1 739 238 128 74 chr13 80921320 80921553 -20951616 + L1ME4a LINE L1 5112 5437 -733 1148 224 96 67 chr13 80921769 80922185 -20950984 + L1ME3A LINE L1 4900 5302 -868 2412 70 7 0 chr13 80922185 80922483 -20950686 - AluY SINE Alu -11 300 1 1148 224 96 67 chr13 80922483 80922997 -20950172 + L1ME3A LINE L1 5302 5858 -312 238 108 68 0 chr13 80923037 80923111 -20950058 + (TA)n Simple_repeat Simple_repeat 2 80 0 1915 129 3 24 chr13 80924173 80924468 -20948701 + AluSx SINE Alu 1 289 -23 2191 109 3 0 chr13 80924663 80924956 -20948213 + AluSc SINE Alu 1 294 -15 630 110 9 9 chr13 80925176 80925285 -20947884 + L1MA4 LINE L1 6188 6296 -4 822 278 196 33 chr13 80926684 80927407 -20945762 - L2 LINE L2 0 3313 2464 2388 59 3 0 chr13 80928517 80928805 -20944364 + AluSq SINE Alu 1 289 -24 765 275 221 8 chr13 80928875 80929268 -20943901 + L2 LINE L2 2837 3313 0 248 227 45 0 chr13 80929354 80929420 -20943749 + L1ME4a LINE L1 5556 5624 -497 278 222 0 0 chr13 80929451 80929505 -20943664 + L1ME4a LINE L1 5693 5746 -2062 2124 110 14 0 chr13 80930131 80930421 -20942748 - AluSx SINE Alu -18 294 1 2908 9 0 0 chr13 80930495 80930812 -20942357 - AluYb8 SINE Alu -1 317 1 2762 139 97 74 chr13 80931040 80931200 -20941969 - MER51A LTR ERV1 0 634 479 2168 104 21 0 chr13 80931200 80931488 -20941681 + AluSx SINE Alu 1 294 -18 2762 139 97 74 chr13 80931488 80931947 -20941222 - MER51A LTR ERV1 -155 479 1 2282 88 3 0 chr13 80931975 80932260 -20940909 + AluSp SINE Alu 11 296 -17 1613 102 0 0 chr13 80932794 80933000 -20940169 - AluSc SINE Alu -103 206 1 1607 165 24 0 chr13 80933003 80933300 -20939869 - THE1A LTR MaLR -51 304 1 3191 203 60 15 chr13 80933300 80934419 -20938750 + L1ME1 LINE L1 4970 6141 -25 8212 39 4 0 chr13 80934424 80936204 -20936965 - L1PA5 LINE L1 -5 6149 4364 276 309 0 0 chr13 80936223 80936333 -20936836 - L1M4 LINE L1 -2211 3935 3826 2268 111 0 0 chr13 80936394 80936692 -20936477 + AluSx SINE Alu 1 298 -14 2353 98 7 0 chr13 80936801 80937108 -20936061 - AluSx SINE Alu -2 310 2 290 278 0 14 chr13 80937233 80937305 -20935864 + MIR SINE MIR 5 75 -187 225 0 0 0 chr13 80937803 80937828 -20935341 + (T)n Simple_repeat Simple_repeat 1 25 0 382 302 130 39 chr13 80939434 80939674 -20933495 - L1M4 LINE L1 -913 5233 4958 439 293 46 23 chr13 80939674 80939848 -20933321 + MER5B DNA MER1_type 1 178 0 382 302 130 39 chr13 80939848 80939915 -20933254 - L1M4 LINE L1 -1188 4958 4898 355 162 193 58 chr13 80939916 80940175 -20932994 + L1ME4a LINE L1 5825 6118 -3 2090 115 3 11 chr13 80940214 80940524 -20932645 - AluSq SINE Alu 0 308 1 22 0 0 0 chr13 80940524 80940546 -20932623 + AT_rich Low_complexity Low_complexity 1 22 0 313 336 20 40 chr13 80940688 80940707 -20932462 - MIR3 SINE MIR -3 205 187 2341 109 0 0 chr13 80940707 80941009 -20932160 + AluSg SINE Alu 1 302 -8 313 336 20 40 chr13 80941009 80941138 -20932031 - MIR3 SINE MIR -21 187 60 960 176 83 23 chr13 80941138 80941354 -20931815 + L1ME2 LINE L1 5933 6161 -3 741 150 8 0 chr13 80941766 80941886 -20931283 + FLAM_C SINE Alu 1 121 -22 443 202 0 0 chr13 80942112 80942201 -20930968 - L1ME3 LINE L1 -12 6150 6062 852 146 14 14 chr13 80942208 80942352 -20930817 + FRAM SINE Alu 1 142 -34 199 319 43 43 chr13 80942363 80942501 -20930668 + L3b LINE CR1 1249 1386 -197 712 304 71 40 chr13 80942778 80943031 -20930138 + L2 LINE L2 3006 3266 -6 1389 171 18 58 chr13 80943089 80943364 -20929805 + AluJo SINE Alu 32 295 -17 386 309 57 87 chr13 80944282 80944742 -20928427 - L2 LINE L2 -1 3271 2826 1887 168 0 0 chr13 80944807 80945098 -20928071 - AluSx SINE Alu -21 291 1 611 214 0 15 chr13 80945100 80945231 -20927938 - AluJ SINE Alu -1 311 183 479 170 0 64 chr13 80945241 80945335 -20927834 - AluJ SINE Alu -188 124 37 1375 194 137 60 chr13 80945343 80945812 -20927357 - MLT1E1 LTR MaLR -149 505 1 2392 87 3 0 chr13 80947932 80948230 -20924939 - AluSx SINE Alu -13 299 1 531 122 52 87 chr13 80948251 80948366 -20924803 - 5S rRNA rRNA -2 119 9 287 178 0 27 chr13 80948621 80948694 -20924475 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 201 321 57 0 chr13 80948830 80948883 -20924286 + MIR SINE MIR 61 116 -146 27 0 0 0 chr13 80949325 80949352 -20923817 + AT_rich Low_complexity Low_complexity 1 27 0 1822 210 63 131 chr13 80949525 80950653 -20922516 + L1MC5 LINE L1 6499 7702 -259 2278 102 3 0 chr13 80950653 80950958 -20922211 + AluSx SINE Alu 3 308 -4 1822 210 63 131 chr13 80950958 80951043 -20922126 + L1MC5 LINE L1 7702 7791 -170 1882 166 0 0 chr13 80951043 80951344 -20921825 - AluSx SINE Alu -11 301 1 1822 210 63 131 chr13 80951344 80951614 -20921555 + L1MC5 LINE L1 7791 7909 -52 297 198 83 10 chr13 80951902 80951998 -20921171 - L1ME3 LINE L1 -276 5888 5786 9692 117 18 50 chr13 80952005 80952356 -20920813 + Tigger4(Zombi) DNA MER2_type 1 362 -2369 2332 104 3 0 chr13 80952356 80952663 -20920506 - AluSp SINE Alu -5 308 1 9692 117 18 50 chr13 80952663 80953221 -20919948 + Tigger4(Zombi) DNA MER2_type 362 936 -1795 1487 212 0 18 chr13 80953221 80953499 -20919670 + AluJo SINE Alu 1 273 -39 9692 117 18 50 chr13 80953499 80954290 -20918879 + Tigger4(Zombi) DNA MER2_type 936 1647 -1084 440 305 81 0 chr13 80954295 80954469 -20918700 - L1ME3 LINE L1 -469 5701 5514 683 277 106 27 chr13 80954940 80955196 -20917973 + MLT1K LTR MaLR 238 513 -75 1794 166 0 17 chr13 80955253 80955575 -20917594 - AluSx SINE Alu 0 317 1 207 0 0 0 chr13 80955968 80955991 -20917178 + (GA)n Simple_repeat Simple_repeat 2 24 0 572 216 144 20 chr13 80956076 80956229 -20916940 - MER69A DNA AcHobo -2 175 4 241 342 8 8 chr13 80959571 80959688 -20913481 + CT-rich Low_complexity Low_complexity 3 119 0 198 0 0 0 chr13 80963786 80963808 -20909361 + (CA)n Simple_repeat Simple_repeat 1 22 0 236 287 125 66 chr13 80964455 80964514 -20908655 - MIR3 SINE MIR -27 181 127 2043 145 0 7 chr13 80964514 80964824 -20908345 + AluJo SINE Alu 5 312 0 236 287 125 66 chr13 80964824 80964900 -20908269 - MIR3 SINE MIR -81 127 38 21 0 0 0 chr13 80965193 80965214 -20907955 + AT_rich Low_complexity Low_complexity 1 21 0 1757 160 48 68 chr13 80965247 80965262 -20907907 + MLT1C LTR MaLR 3 17 -450 1910 148 50 3 chr13 80965262 80965601 -20907568 + THE1A LTR MaLR 1 355 0 1757 160 48 68 chr13 80965601 80966059 -20907110 + MLT1C LTR MaLR 17 467 0 1580 178 24 53 chr13 80966562 80966638 -20906531 - MLT1A1 LTR MaLR 0 365 288 2172 118 0 3 chr13 80966638 80966935 -20906234 + AluSx SINE Alu 3 298 -14 1580 178 24 53 chr13 80966935 80967234 -20905935 - MLT1A1 LTR MaLR -77 288 1 282 56 0 0 chr13 80967690 80967726 -20905443 - MER53 DNA DNA 0 189 154 457 173 10 10 chr13 80967740 80967844 -20905325 + CT-rich Low_complexity Low_complexity 1 104 0 1956 127 43 3 chr13 80967844 80968143 -20905026 - AluSx SINE Alu -1 311 1 227 159 143 0 chr13 80968154 80968217 -20904952 + MER53 DNA DNA 73 144 -45 251 286 63 40 chr13 80968233 80968359 -20904810 + L2 LINE L2 2984 3112 -201 1574 184 40 7 chr13 80968954 80969232 -20903937 + AluJo SINE Alu 1 287 -25 2564 49 0 3 chr13 80969979 80970283 -20902886 - AluY SINE Alu -8 303 1 243 0 0 0 chr13 80971219 80971246 -20901923 + (TG)n Simple_repeat Simple_repeat 1 27 0 346 38 19 19 chr13 80971246 80971299 -20901870 + (GA)n Simple_repeat Simple_repeat 2 54 0 25 0 0 0 chr13 80971786 80971811 -20901358 + AT_rich Low_complexity Low_complexity 1 25 0 219 366 0 0 chr13 80972599 80972670 -20900499 - L2 LINE L2 -15 3257 3187 207 214 0 0 chr13 80973336 80973378 -20899791 + A-rich Low_complexity Low_complexity 1 42 0 228 379 155 9 chr13 80974570 80975106 -20898063 - L2 LINE L2 -456 2858 2245 28 0 0 0 chr13 80975770 80975798 -20897371 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr13 80976965 80977005 -20896164 + (CA)n Simple_repeat Simple_repeat 2 41 0 23 54 0 0 chr13 80977078 80977115 -20896054 + AT_rich Low_complexity Low_complexity 1 37 0 2179 136 0 3 chr13 80977181 80977489 -20895680 + AluSx SINE Alu 4 310 -2 2040 134 3 0 chr13 80978148 80978166 -20895003 - AluSx SINE Alu -13 299 283 240 35 0 0 chr13 80978166 80978195 -20894974 + (TG)n Simple_repeat Simple_repeat 1 29 0 2040 134 3 0 chr13 80978195 80978474 -20894695 - AluSx SINE Alu -29 283 1 615 231 23 0 chr13 80979168 80979298 -20893871 + MIR SINE MIR 11 143 -119 285 98 0 0 chr13 80979300 80979341 -20893828 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 1711 266 170 22 chr13 80979345 80980578 -20892591 - L2 LINE L2 -43 3270 1850 247 203 94 16 chr13 80980585 80980649 -20892520 - MER69 DNA AcHobo -4 2522 2454 201 111 0 127 chr13 80980667 80980730 -20892439 + (TAAAAA)n Simple_repeat Simple_repeat 6 60 0 30 83 0 0 chr13 80980807 80980879 -20892290 + AT_rich Low_complexity Low_complexity 1 72 0 2030 142 0 3 chr13 80980892 80981188 -20891981 + AluSx SINE Alu 1 295 -17 1251 188 69 60 chr13 80981199 80981244 -20891925 - MER69 DNA AcHobo -153 2373 2330 1743 189 10 13 chr13 80981244 80981557 -20891612 + AluJo SINE Alu 1 312 0 1251 188 69 60 chr13 80981557 80981974 -20891195 - MER69 DNA AcHobo -196 2330 1907 336 228 116 116 chr13 80981972 80982124 -20891045 - MER69 DNA AcHobo -1696 830 679 * 1684 161 52 0 chr13 80982124 80982422 -20890747 - AluJo SINE Alu 0 316 5 336 228 116 116 chr13 80982422 80982588 -20890581 - MER69 DNA AcHobo -1846 680 511 1183 188 70 53 chr13 80982631 80982988 -20890181 - MER69 DNA AcHobo -2123 403 34 215 258 0 113 chr13 80983026 80983088 -20890081 + MER91 DNA MER1_type 86 140 0 * 297 184 53 13 chr13 80983088 80983149 -20890020 - L2 LINE L2 -1545 1769 1706 433 313 31 12 chr13 80983325 80983485 -20889684 - L2 LINE L2 -1653 1661 1499 1398 138 22 9 chr13 80983660 80983885 -20889284 + MLT2C1 LTR ERVL 1 228 -169 281 239 0 22 chr13 80983924 80984016 -20889153 + L1MC4 LINE L1 6614 6703 -1339 312 137 0 0 chr13 80984023 80984074 -20889095 + (TA)n Simple_repeat Simple_repeat 1 51 0 210 118 0 0 chr13 80984075 80984109 -20889060 + (GGGAGA)n Simple_repeat Simple_repeat 1 34 0 2061 127 0 0 chr13 80984109 80984392 -20888777 - AluSq SINE Alu -30 283 1 816 136 109 118 chr13 80984605 80984826 -20888343 - MER20 DNA MER1_type 0 219 1 1845 142 3 24 chr13 80985338 80985634 -20887535 + AluJo SINE Alu 14 303 -9 3980 123 35 70 chr13 80985732 80986526 -20886643 + L1MB7 LINE L1 5419 6184 0 1238 171 0 23 chr13 80986757 80986974 -20886195 + AluJo SINE Alu 87 298 -14 2049 152 0 22 chr13 80987028 80987344 -20885825 + AluSx SINE Alu 1 309 -3 426 150 12 0 chr13 80987350 80987430 -20885739 - L2 LINE L2 -12 3301 3221 183 80 0 0 chr13 80987430 80987455 -20885714 + (A)n Simple_repeat Simple_repeat 1 25 0 562 324 143 4 chr13 80987494 80987753 -20885416 + L3 LINE CR1 1083 1377 -200 519 325 21 13 chr13 80987766 80988003 -20885166 - MIR SINE MIR -15 247 9 234 204 0 0 chr13 80988288 80988332 -20884837 - L2 LINE L2 -10 3262 3219 984 299 51 12 chr13 80988486 80988516 -20884653 - L2 LINE L2 0 3313 3286 2309 113 0 0 chr13 80988516 80988816 -20884353 + AluSx SINE Alu 2 301 -11 984 299 51 12 chr13 80988816 80989200 -20883969 - L2 LINE L2 -27 3286 2883 1062 201 130 34 chr13 80989391 80989886 -20883283 + MLT1E2 LTR MaLR 5 626 0 1485 217 2 60 chr13 80989886 80990262 -20882907 - L2 LINE L2 -734 2580 2229 2232 105 3 0 chr13 80990262 80990548 -20882621 - AluSx SINE Alu -20 292 6 1485 217 2 60 chr13 80990548 80990586 -20882583 - L2 LINE L2 -1085 2229 2190 660 183 163 7 chr13 80990589 80990742 -20882427 + MLT1E2 LTR MaLR 1 177 -477 1633 221 6 26 chr13 80990745 80991093 -20882076 - MLT1A2 LTR MaLR 0 374 34 1898 195 32 63 chr13 80991147 80991627 -20881542 + MLT1E2 LTR MaLR 140 626 0 845 253 8 28 chr13 80991627 80991876 -20881293 - L2 LINE L2 -1128 2186 1943 234 339 128 0 chr13 80991882 80991991 -20881178 - MIR SINE MIR -67 141 19 25 0 0 0 chr13 80992023 80992048 -20881121 + AT_rich Low_complexity Low_complexity 1 25 0 2110 136 42 33 chr13 80992099 80992460 -20880709 + THE1B LTR MaLR 1 364 0 354 329 6 37 chr13 80992558 80992722 -20880447 - MER5B DNA MER1_type 0 178 20 553 276 101 22 chr13 80993004 80993384 -20879785 + MLT1J2 LTR MaLR 7 450 0 635 155 0 10 chr13 80993966 80994069 -20879100 + FLAM_A SINE Alu 22 123 -19 638 147 17 26 chr13 80994448 80994564 -20878605 - AluJo SINE Alu -80 232 118 189 0 0 0 chr13 80994564 80994585 -20878584 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 917 268 24 24 chr13 80994622 80994876 -20878293 + MLT1I LTR MaLR 4 257 -152 316 208 91 0 chr13 80994895 80994972 -20878197 + MLT1J2 LTR MaLR 365 448 -2 860 148 0 0 chr13 80995121 80995249 -20877920 - AluJo SINE Alu -172 130 3 1418 220 97 99 chr13 80995280 80995660 -20877509 - L2 LINE L2 -1199 2115 1736 1523 179 13 39 chr13 80995660 80995968 -20877201 - AluJo SINE Alu -12 300 1 1418 220 97 99 chr13 80995968 80996059 -20877110 - L2 LINE L2 -1578 1736 1646 1929 164 0 0 chr13 80996059 80996357 -20876812 - 7SLRNA srpRNA srpRNA -3 317 20 1418 220 97 99 chr13 80996357 80996428 -20876741 - L2 LINE L2 -1668 1646 1576 1061 269 99 28 chr13 80996428 80996934 -20876235 - MLT1F LTR MaLR 0 542 1 1418 220 97 99 chr13 80996934 80997089 -20876080 - L2 LINE L2 -1738 1576 1417 247 241 143 36 chr13 80999963 81000075 -20873094 + MER69A DNA AcHobo 42 165 -12 357 24 0 0 chr13 81002923 81002965 -20870204 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 227 240 0 0 chr13 81002968 81003018 -20870151 - L2 LINE L2 -13 3300 3251 209 235 0 25 chr13 81004744 81004825 -20868344 + GA-rich Low_complexity Low_complexity 2 80 0 244 213 0 0 chr13 81004830 81004877 -20868292 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chr13 81006632 81006661 -20866508 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 81006945 81006966 -20866203 + AT_rich Low_complexity Low_complexity 1 21 0 317 128 23 23 chr13 81008352 81008438 -20864731 + (CGG)n Simple_repeat Simple_repeat 3 88 0 24 53 0 0 chr13 81008476 81008514 -20864655 + GC_rich Low_complexity Low_complexity 1 38 0 204 97 0 0 chr13 81009414 81009445 -20863724 + (GGA)n Simple_repeat Simple_repeat 1 31 0 324 0 0 0 chr13 81011406 81011442 -20861727 + (CA)n Simple_repeat Simple_repeat 1 36 0 464 296 23 30 chr13 81014428 81014607 -20858562 - MIR SINE MIR -56 206 33 182 37 37 0 chr13 81015344 81015371 -20857798 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 3774 30 0 0 chr13 81015373 81015804 -20857365 - L1PA5 LINE L1 -15 6139 5709 624 267 38 44 chr13 81015858 81016142 -20857027 - L1ME3 LINE L1 -230 5940 5663 524 249 91 12 chr13 81016141 81016306 -20856863 - L1ME LINE L1 -5861 209 32 * 1130 225 77 143 chr13 81016324 81016689 -20856480 - L1ME3 LINE L1 -1146 5000 4612 1519 213 14 0 chr13 81016689 81016971 -20856198 - AluJb SINE Alu -26 286 1 1130 225 77 143 chr13 81016971 81016993 -20856176 - L1ME3 LINE L1 -1534 4612 4590 1934 102 11 15 chr13 81016993 81017281 -20855888 - AluSg1 SINE Alu 0 303 17 1130 225 77 143 chr13 81017281 81017416 -20855753 - L1ME3 LINE L1 -1556 4590 4448 2274 97 14 0 chr13 81017416 81017705 -20855464 + AluSg SINE Alu 5 297 -13 1130 225 77 143 chr13 81017705 81017830 -20855339 - L1ME3 LINE L1 -1698 4448 4316 1909 159 0 0 chr13 81017830 81018131 -20855038 - AluSx SINE Alu -6 306 6 1130 225 77 143 chr13 81018131 81018260 -20854909 - L1ME3 LINE L1 -1830 4316 4298 1973 141 0 22 chr13 81018260 81018579 -20854590 - AluJb SINE Alu 0 312 1 1130 225 77 143 chr13 81018579 81018794 -20854375 - L1ME3 LINE L1 -1848 4298 4070 2100 131 0 13 chr13 81020042 81020347 -20852822 - AluJb SINE Alu 0 312 12 433 323 52 0 chr13 81020473 81020628 -20852541 + L2 LINE L2 3110 3272 0 2236 136 0 0 chr13 81020986 81021296 -20851873 + AluSq SINE Alu 3 312 -1 2390 68 0 0 chr13 81021310 81021621 -20851548 - AluSc SINE Alu 0 311 1 1172 202 79 108 chr13 81022010 81022216 -20850953 + MLT1B LTR MaLR 1 193 -197 345 100 0 0 chr13 81022216 81022266 -20850903 + (TG)n Simple_repeat Simple_repeat 2 51 0 1172 202 79 108 chr13 81022266 81022440 -20850729 + MLT1B LTR MaLR 193 370 -20 1902 270 53 6 chr13 81023044 81023574 -20849595 + MLT1H1 LTR MaLR 1 555 0 229 331 145 0 chr13 81024763 81024908 -20848261 + MIR SINE MIR 1 166 -96 2433 82 0 3 chr13 81024974 81025277 -20847892 - AluY SINE Alu -9 302 1 374 221 0 8 chr13 81025516 81025610 -20847559 - L1M3 LINE L1 -518 5665 5575 10443 55 7 0 chr13 81025633 81027681 -20845488 + L1PA6 LINE L1 4085 6140 -14 302 284 0 12 chr13 81027708 81027789 -20845380 - L1M3 LINE L1 -596 5588 5509 1950 164 12 181 chr13 81027796 81028515 -20844654 - MLT2B3 LTR ERVL 0 520 1 514 206 0 9 chr13 81028515 81028622 -20844547 - L1M3 LINE L1 -678 5506 5401 6344 34 0 0 chr13 81028622 81029358 -20843811 - L1PA5 LINE L1 -1 6153 5418 5235 42 2 0 chr13 81029358 81029989 -20843180 + L1P LINE L1 3298 3929 -2217 601 146 77 0 chr13 81030005 81030135 -20843034 - L1M3 LINE L1 -767 5411 5272 593 218 40 11 chr13 81030132 81030306 -20842863 - L1M3 LINE L1 -1409 4737 4559 * 989 176 19 192 chr13 81030349 81030655 -20842514 + MLT2D LTR ERVL 69 292 -105 472 65 26 0 chr13 81030655 81030732 -20842437 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 989 176 19 192 chr13 81030732 81030817 -20842352 + MLT2D LTR ERVL 292 390 -7 391 291 32 0 chr13 81030819 81030977 -20842192 - L1M3 LINE L1 -2655 3491 3329 3848 217 39 25 chr13 81031159 81032266 -20840903 - L1M3 LINE L1 -2876 3270 2149 581 207 0 0 chr13 81032354 81032470 -20840699 - FRAM SINE Alu -1 175 60 378 289 56 35 chr13 81032476 81032850 -20840319 - L1M4c LINE L1 -4138 3000 2619 2097 250 75 48 chr13 81033045 81034002 -20839167 - L1M4c LINE L1 -4436 2702 1573 2269 75 7 0 chr13 81034002 81034283 -20838886 + AluY SINE Alu 1 307 0 217 0 0 0 chr13 81034283 81034307 -20838862 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2097 250 75 48 chr13 81034307 81034575 -20838594 - L1M4c LINE L1 -5565 1573 1314 1831 232 44 73 chr13 81034576 81034982 -20838187 - L1M4c LINE L1 -6279 580 164 976 126 11 11 chr13 81034982 81035156 -20838013 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 1478 189 0 34 chr13 81035157 81035422 -20837747 - AluJo SINE Alu -39 273 18 1831 232 44 73 chr13 81035422 81035561 -20837608 - L1M4c LINE L1 -6694 165 49 217 228 304 0 chr13 81036279 81036358 -20836811 - L2 LINE L2 -1 3271 3169 257 316 84 40 chr13 81036483 81036522 -20836647 - L2 LINE L2 -219 3053 3017 1321 178 7 135 chr13 81036522 81036937 -20836232 - MLT1A1 LTR MaLR -2 363 2 257 316 84 40 chr13 81036937 81037260 -20835909 - L2 LINE L2 -255 3017 2673 2120 82 39 11 chr13 81037516 81037798 -20835371 - AluSg SINE Alu -20 290 1 501 267 126 6 chr13 81038226 81038503 -20834666 - LTR33A LTR ERVL -2 521 296 273 57 0 0 chr13 81038594 81038629 -20834540 + (GGAGAA)n Simple_repeat Simple_repeat 5 39 0 180 0 0 0 chr13 81038649 81038669 -20834500 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1301 172 0 10 chr13 81038671 81038875 -20834294 - AluJb SINE Alu -20 292 91 2265 118 3 6 chr13 81038891 81039204 -20833965 - AluSx SINE Alu 0 312 1 1388 183 6 37 chr13 81039233 81039565 -20833604 - MLT1A1 LTR MaLR 0 374 2 926 186 15 25 chr13 81039566 81039765 -20833404 - MLT1A1 LTR MaLR -137 228 32 355 239 56 42 chr13 81039818 81039960 -20833209 - LTR50 LTR ERVL -648 147 4 1203 124 14 0 chr13 81040094 81040304 -20832865 - L1MA7 LINE L1 -1 6290 6078 1828 232 82 2 chr13 81040574 81041040 -20832129 + MLT1D LTR MaLR 1 503 -2 255 231 66 66 chr13 81041099 81041190 -20831979 - MIR SINE MIR -75 187 97 200 269 39 0 chr13 81041729 81041781 -20831388 - L2 LINE L2 -3 3269 3216 599 194 0 0 chr13 81042377 81042475 -20830694 + FRAM SINE Alu 46 143 -33 804 116 48 0 chr13 81042483 81042630 -20830539 - L1MA7 LINE L1 -60 6231 6078 184 152 25 38 chr13 81042706 81042785 -20830384 + (TA)n Simple_repeat Simple_repeat 1 78 0 300 181 21 75 chr13 81042800 81042894 -20830275 - L1MC4 LINE L1 -1339 6703 6615 225 132 0 0 chr13 81042894 81042932 -20830237 + (CA)n Simple_repeat Simple_repeat 1 38 0 2281 117 0 0 chr13 81042956 81043263 -20829906 - AluSx SINE Alu -5 307 1 248 221 29 29 chr13 81044260 81044273 -20828896 + GA-rich Low_complexity Low_complexity 3 15 -55 2219 122 6 3 chr13 81044273 81044585 -20828584 + AluSq SINE Alu 1 313 0 248 221 29 29 chr13 81044585 81044639 -20828530 + GA-rich Low_complexity Low_complexity 14 70 0 28 48 0 0 chr13 81045192 81045234 -20827935 + AT_rich Low_complexity Low_complexity 1 42 0 215 73 98 0 chr13 81045869 81045910 -20827259 + A-rich Low_complexity Low_complexity 1 45 0 328 333 144 17 chr13 81046287 81046467 -20826702 + L2 LINE L2 3065 3267 -5 728 178 0 13 chr13 81046510 81046662 -20826507 + CT-rich Low_complexity Low_complexity 2 151 0 1772 169 13 16 chr13 81046683 81046996 -20826173 - AluJb SINE Alu 0 312 1 21 0 0 0 chr13 81047201 81047222 -20825947 + AT_rich Low_complexity Low_complexity 1 21 0 967 166 25 0 chr13 81048672 81048829 -20824340 + FRAM SINE Alu 1 161 -5 23 0 0 0 chr13 81048995 81049018 -20824151 + AT_rich Low_complexity Low_complexity 1 23 0 1474 173 14 0 chr13 81049900 81050183 -20822986 - L1MB7 LINE L1 -23 6161 5875 2408 85 10 0 chr13 81050499 81050804 -20822365 - AluSx SINE Alu -4 308 1 266 222 185 22 chr13 81051430 81051565 -20821604 - L1MB7 LINE L1 -260 5861 5705 37 69 0 0 chr13 81051610 81051682 -20821487 + AT_rich Low_complexity Low_complexity 1 72 0 380 231 75 40 chr13 81051682 81051881 -20821288 - L1MB7 LINE L1 -464 5657 5452 846 300 105 17 chr13 81051889 81052402 -20820767 - L1MB7 LINE L1 -707 5414 4858 5152 159 41 0 chr13 81052683 81054086 -20819083 - L1PA16 LINE L1 0 6166 4643 238 346 10 0 chr13 81055794 81055898 -20817271 + CT-rich Low_complexity Low_complexity 2 106 0 2568 201 0 67 chr13 81056220 81056920 -20816249 - L1MB7 LINE L1 -1490 4656 4004 21 57 0 0 chr13 81057146 81057181 -20815988 + AT_rich Low_complexity Low_complexity 1 35 0 222 247 0 74 chr13 81057266 81057347 -20815822 + CT-rich Low_complexity Low_complexity 6 80 0 267 275 0 14 chr13 81057968 81058071 -20815098 + CT-rich Low_complexity Low_complexity 1 101 0 235 160 67 118 chr13 81058639 81058719 -20814450 + L1MB2 LINE L1 6058 6132 -39 1921 147 3 31 chr13 81058719 81059039 -20814130 - AluJb SINE Alu -1 311 1 235 160 67 118 chr13 81059039 81059077 -20814092 + L1MB2 LINE L1 6132 6170 -1 216 256 183 0 chr13 81059400 81059482 -20813687 - MIR SINE MIR -1 261 165 372 282 79 45 chr13 81059725 81059927 -20813242 + MLT1J LTR MaLR 110 318 -193 578 237 119 87 chr13 81060392 81060819 -20812350 + MLT1H1 LTR MaLR 108 553 -2 35 71 0 0 chr13 81061120 81061190 -20811979 + AT_rich Low_complexity Low_complexity 1 70 0 4158 133 3 10 chr13 81061221 81061907 -20811262 + Tigger1 DNA MER2_type 1738 2418 0 503 268 50 23 chr13 81062268 81062488 -20810681 + L1ME4a LINE L1 5831 6056 -65 2635 165 9 13 chr13 81062668 81063134 -20810035 + MER66B LTR ERV1 7 470 -16 244 286 43 14 chr13 81063161 81063301 -20809868 - L1MC4a LINE L1 -1768 6040 5897 3974 135 15 12 chr13 81063302 81063343 -20809826 - Tigger1 DNA MER2_type -984 1434 1395 2533 144 29 2 chr13 81063343 81063760 -20809409 - MSTA LTR MaLR 0 428 1 3974 135 15 12 chr13 81063760 81064391 -20808778 - Tigger1 DNA MER2_type -1023 1395 760 2357 130 57 60 chr13 81064374 81064844 -20808325 - Tigger1 DNA MER2_type -1904 514 46 * 342 0 0 0 chr13 81064973 81065011 -20808158 + (TG)n Simple_repeat Simple_repeat 2 39 0 1041 235 78 19 chr13 81066757 81067293 -20805876 - MER90 LTR ERV1 -2 612 6 202 250 0 0 chr13 81067354 81067398 -20805771 - L2 LINE L2 -1 3312 3269 342 233 57 131 chr13 81067574 81067750 -20805419 - L2 LINE L2 -237 3035 2873 371 224 131 9 chr13 81068629 81068736 -20804433 + MIR SINE MIR 96 215 -47 1723 158 24 20 chr13 81070389 81070681 -20802488 + AluJo SINE Alu 1 293 -19 2319 95 0 0 chr13 81071016 81071312 -20801857 + AluSc SINE Alu 1 296 -13 678 185 50 0 chr13 81071577 81071696 -20801473 + AluJo SINE Alu 3 127 -185 995 132 66 0 chr13 81072203 81072355 -20800814 + AluJo SINE Alu 119 280 -32 197 196 20 0 chr13 81072357 81072408 -20800761 + GA-rich Low_complexity Low_complexity 1 52 0 742 153 0 15 chr13 81072473 81072604 -20800565 - FLAM_A SINE Alu 0 133 5 21 36 0 0 chr13 81073645 81073673 -20799496 + AT_rich Low_complexity Low_complexity 1 28 0 262 157 39 20 chr13 81075522 81075573 -20797596 - L2 LINE L2 0 3313 3262 2177 155 38 28 chr13 81075651 81076195 -20796974 + MLT2A2 LTR ERVL 1 554 0 192 266 62 16 chr13 81076318 81076382 -20796787 + MIR3 SINE MIR 93 159 -49 1031 158 62 0 chr13 81076396 81076573 -20796596 - MER5A DNA MER1_type -1 188 1 1770 136 20 43 chr13 81077117 81077419 -20795750 - AluSx SINE Alu -17 295 1 1871 144 14 14 chr13 81078152 81078436 -20794733 + AluJo SINE Alu 14 297 -15 244 268 134 37 chr13 81078455 81078537 -20794632 - MIR3 SINE MIR -48 160 71 25 0 0 0 chr13 81078633 81078658 -20794511 + AT_rich Low_complexity Low_complexity 1 25 0 1794 155 12 65 chr13 81078756 81078844 -20794325 - L1MB5 LINE L1 -28 6146 6055 2169 127 3 0 chr13 81078844 81079151 -20794018 - AluSq SINE Alu -5 308 1 1794 155 12 65 chr13 81079151 81079463 -20793706 - L1MB5 LINE L1 -119 6055 5767 337 253 0 55 chr13 81079650 81079741 -20793428 + MIR SINE MIR 86 171 -91 214 395 47 23 chr13 81080110 81080282 -20792887 - MIR SINE MIR -70 192 17 1001 144 123 164 chr13 81080412 81080598 -20792571 + MLT1C LTR MaLR 23 215 -252 2297 82 20 0 chr13 81080598 81080891 -20792278 - AluY SINE Alu -12 299 1 1001 144 123 164 chr13 81080891 81081168 -20792001 + MLT1C LTR MaLR 215 467 0 2305 84 0 10 chr13 81081595 81081893 -20791276 + AluY SINE Alu 1 295 -16 368 309 24 24 chr13 81082240 81082366 -20790803 + MIR3 SINE MIR 12 137 -71 3395 85 18 0 chr13 81082812 81083257 -20789912 + MLT2A2 LTR ERVL 1 453 0 46 19 0 0 chr13 81083441 81083494 -20789675 + AT_rich Low_complexity Low_complexity 1 53 0 252 182 15 30 chr13 81084205 81084271 -20788898 + (TTA)n Simple_repeat Simple_repeat 1 65 0 268 353 84 36 chr13 81085184 81085433 -20787736 - L2 LINE L2 -420 2894 2634 250 327 70 60 chr13 81085444 81085643 -20787526 - L2 LINE L2 -791 2523 2323 200 245 41 20 chr13 81086021 81086070 -20787099 + MIR SINE MIR 43 92 -116 865 259 14 14 chr13 81086178 81086398 -20786771 + MIR SINE MIR 43 262 0 2243 103 0 26 chr13 81086479 81086789 -20786380 + AluSx SINE Alu 1 302 -10 424 284 133 23 chr13 81087418 81087636 -20785533 + MLT1J2 LTR MaLR 204 445 -5 1684 124 11 45 chr13 81087687 81087953 -20785216 - AluJo SINE Alu -45 267 11 775 292 46 43 chr13 81088398 81088703 -20784466 - L2 LINE L2 0 3313 3008 764 333 41 3 chr13 81088698 81089016 -20784153 - L2 LINE L2 -436 2878 2549 * 221 372 53 9 chr13 81089182 81089295 -20783874 + L2 LINE L2 3123 3240 -32 3660 163 66 62 chr13 81089477 81090069 -20783100 + L1MB7 LINE L1 5031 5628 -556 2321 72 41 0 chr13 81090069 81090362 -20782807 + AluY SINE Alu 1 305 -6 3660 163 66 62 chr13 81090362 81090906 -20782263 + L1MB7 LINE L1 5628 6168 -16 1814 162 36 0 chr13 81091096 81091430 -20781739 + L1MB2 LINE L1 5825 6170 -1 220 244 0 0 chr13 81091452 81091497 -20781672 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 248 130 22 0 chr13 81092607 81092653 -20780516 + (TG)n Simple_repeat Simple_repeat 2 48 0 381 93 0 0 chr13 81092956 81093010 -20780159 + (TG)n Simple_repeat Simple_repeat 1 54 0 2361 95 3 0 chr13 81093185 81093489 -20779680 - AluSx SINE Alu -7 305 1 977 161 0 12 chr13 81093872 81094033 -20779136 - FRAM SINE Alu -11 165 7 204 40 0 0 chr13 81094455 81094480 -20778689 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2218 131 0 3 chr13 81094976 81095289 -20777880 - AluSx SINE Alu 0 312 1 467 270 51 0 chr13 81095478 81095615 -20777554 + MIR SINE MIR 71 214 -48 1579 90 45 9 chr13 81096341 81096563 -20776606 - MER30 DNA MER1_type 0 230 1 315 161 0 0 chr13 81097877 81097933 -20775236 + CT-rich Low_complexity Low_complexity 2 57 0 2132 133 0 0 chr13 81097936 81098237 -20774932 - AluSx SINE Alu -11 301 1 864 158 0 0 chr13 81098821 81098948 -20774221 + FLAM_C SINE Alu 1 127 -16 400 305 8 0 chr13 81099342 81099470 -20773699 - MER94 DNA DNA -1 133 5 617 269 184 0 chr13 81099477 81099689 -20773480 - MIR SINE MIR -4 258 8 405 286 61 27 chr13 81100091 81100238 -20772931 - MIR SINE MIR -108 154 3 182 36 0 36 chr13 81100267 81100295 -20772874 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 65 43 22 chr13 81100295 81100335 -20772834 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 181 256 0 0 chr13 81100404 81100443 -20772726 - L2 LINE L2 0 3272 3234 853 136 0 0 chr13 81100455 81100573 -20772596 - FLAM_C SINE Alu -15 118 1 237 373 32 48 chr13 81100577 81100703 -20772466 - L2 LINE L2 -26 3246 3123 354 351 38 52 chr13 81100895 81101027 -20772142 - L2 LINE L2 -558 2756 2624 1856 156 7 30 chr13 81101027 81101328 -20771841 + AluJb SINE Alu 1 294 -18 354 351 38 52 chr13 81101328 81101562 -20771607 - L2 LINE L2 -690 2624 2395 609 322 98 4 chr13 81102353 81102589 -20770580 + MIR SINE MIR 4 261 -1 350 315 27 0 chr13 81103273 81103384 -20769785 + MIR3 SINE MIR 95 208 0 1767 166 68 80 chr13 81104261 81104772 -20768397 - MLT1D LTR MaLR 0 505 1 450 0 0 0 chr13 81105007 81105057 -20768112 + (CA)n Simple_repeat Simple_repeat 1 50 0 865 134 7 7 chr13 81105133 81105275 -20767894 + FLAM_C SINE Alu 1 142 -1 427 241 0 11 chr13 81105789 81105897 -20767272 - AluJb SINE Alu 0 303 197 21 0 0 0 chr13 81106769 81106790 -20766379 + AT_rich Low_complexity Low_complexity 1 21 0 286 331 101 14 chr13 81108697 81108845 -20764324 - MIR SINE MIR -70 192 32 2329 150 59 10 chr13 81109154 81109560 -20763609 + MSTB LTR MaLR 1 426 0 360 313 104 23 chr13 81110150 81110534 -20762635 - L1M4 LINE L1 -1247 4899 4485 21 0 0 0 chr13 81110547 81110568 -20762601 + AT_rich Low_complexity Low_complexity 1 21 0 364 401 13 7 chr13 81111639 81111791 -20761378 - MIR3 SINE MIR -54 154 2 396 303 41 33 chr13 81112396 81112518 -20760651 - L2 LINE L2 -1 3271 3149 2519 61 3 0 chr13 81112608 81112918 -20760251 + AluY SINE Alu 1 311 0 1796 146 4 4 chr13 81112953 81113233 -20759936 + AluSx SINE Alu 1 280 -32 360 0 0 0 chr13 81113233 81113273 -20759896 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 234 174 0 0 chr13 81113548 81113594 -20759575 + CT-rich Low_complexity Low_complexity 1 46 0 31 88 0 0 chr13 81113726 81113806 -20759363 + AT_rich Low_complexity Low_complexity 1 80 0 399 275 11 46 chr13 81114005 81114222 -20758947 - L1ME3A LINE L1 -213 5951 5738 627 112 26 0 chr13 81114230 81114346 -20758823 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 916 269 101 59 chr13 81114350 81115531 -20757638 - L1ME3A LINE L1 -443 5719 4491 350 239 62 15 chr13 81115643 81115773 -20757396 - L1ME3A LINE L1 -1836 4310 4175 2973 34 3 0 chr13 81115777 81116133 -20757036 - L1PA5 LINE L1 0 6154 5798 594 292 46 11 chr13 81117517 81117801 -20755368 - L1ME4a LINE L1 -296 5825 5532 237 108 0 0 chr13 81118013 81118050 -20755119 + (T)n Simple_repeat Simple_repeat 1 37 0 226 366 0 11 chr13 81118458 81118551 -20754618 + CT-rich Low_complexity Low_complexity 1 92 0 2409 36 13 0 chr13 81118699 81119161 -20754008 - L1P2 LINE L1 -612 5542 5077 247 348 38 0 chr13 81119160 81119318 -20753851 - L1ME3A LINE L1 -1986 4160 3997 * 559 300 84 33 chr13 81119510 81120114 -20753055 - L1ME3A LINE L1 -2401 3745 3111 441 193 175 18 chr13 81120349 81120520 -20752649 - L1MC5 LINE L1 -63 7898 7701 1501 129 0 0 chr13 81120540 81120742 -20752427 + AluSx SINE Alu 1 202 -110 823 212 31 61 chr13 81120742 81121035 -20752134 - L1MC5 LINE L1 -665 7296 7013 419 152 13 0 chr13 81121387 81121466 -20751703 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 188 200 120 0 chr13 81122194 81122244 -20750925 + MIR SINE MIR 194 249 -13 * 200 186 0 23 chr13 81122220 81122263 -20750906 + L2 LINE L2 3271 3312 -1 652 201 168 0 chr13 81122394 81122543 -20750626 + MER5A DNA MER1_type 15 188 -1 868 171 143 0 chr13 81122960 81123170 -20749999 - MER58B DNA MER1_type -16 325 86 604 76 0 21 chr13 81123174 81123399 -20749770 + AluY SINE Alu 1 296 -15 340 243 14 0 chr13 81123399 81123473 -20749696 - MER58B DNA MER1_type -266 75 1 815 157 37 0 chr13 81123860 81123994 -20749175 - FRAM SINE Alu -10 166 28 257 227 124 10 chr13 81124084 81124181 -20748988 - L1MC5 LINE L1 -1872 5936 5829 1249 104 60 0 chr13 81124182 81124365 -20748804 - AluSq SINE Alu -1 312 119 275 213 93 0 chr13 81124385 81124460 -20748709 - L1MC5 LINE L1 -329 5792 5711 586 251 160 3 chr13 81124484 81124676 -20748493 - MIR SINE MIR -9 253 31 470 364 56 0 chr13 81125756 81125951 -20747218 - MIR SINE MIR -55 207 2 180 0 0 0 chr13 81125962 81125982 -20747187 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 434 316 48 18 chr13 81125984 81126152 -20747017 - L2 LINE L2 -15 3298 3126 197 254 17 17 chr13 81126499 81126558 -20746611 + L3 LINE CR1 1164 1222 -355 1900 147 0 4 chr13 81130261 81130540 -20742629 + AluJb SINE Alu 19 296 -16 1736 178 78 38 chr13 81132067 81132234 -20740935 + MLT1C LTR MaLR 4 163 -304 351 0 0 0 chr13 81132234 81132273 -20740896 + (CA)n Simple_repeat Simple_repeat 2 40 0 1736 178 78 38 chr13 81132273 81132527 -20740642 + MLT1C LTR MaLR 163 442 -25 1539 87 0 29 chr13 81134019 81134227 -20738942 + AluSg/x SINE Alu 102 303 -9 641 188 109 0 chr13 81134966 81135094 -20738075 + AluJb SINE Alu 158 299 -13 286 221 105 12 chr13 81135345 81135431 -20737738 - MLT1J1 LTR MaLR -348 98 5 10641 176 10 12 chr13 81135617 81138712 -20734457 + L1PB1 LINE L1 3058 6147 -4 973 199 0 0 chr13 81138835 81139006 -20734163 - AluJb SINE Alu -3 309 139 294 242 81 16 chr13 81139317 81139441 -20733728 + HAL1 LINE L1 2275 2406 -101 186 43 0 0 chr13 81140561 81140584 -20732585 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 425 269 20 96 chr13 81142355 81142552 -20730617 + L2 LINE L2 2364 2545 -769 383 284 49 37 chr13 81142555 81142677 -20730492 + MIR SINE MIR 92 218 -44 2166 129 0 7 chr13 81142677 81142986 -20730183 + AluSx SINE Alu 1 307 -5 383 284 49 37 chr13 81142986 81143025 -20730144 + MIR SINE MIR 218 255 -7 185 194 0 0 chr13 81143383 81143419 -20729750 + L2 LINE L2 2530 2565 -749 23 0 0 0 chr13 81143501 81143524 -20729645 + AT_rich Low_complexity Low_complexity 1 23 0 256 128 0 0 chr13 81144334 81144373 -20728796 - L2 LINE L2 -17 3296 3258 1995 141 10 3 chr13 81145090 81145395 -20727774 - AluJo SINE Alu -5 307 1 492 268 53 32 chr13 81146115 81146221 -20726948 + MIR SINE MIR 43 156 -106 1640 148 81 14 chr13 81146221 81146505 -20726664 + AluJb SINE Alu 1 303 -9 492 268 53 32 chr13 81146505 81146588 -20726581 + MIR SINE MIR 156 236 -26 213 152 0 22 chr13 81146590 81146636 -20726533 + (TA)n Simple_repeat Simple_repeat 2 46 0 1827 146 9 56 chr13 81146693 81147016 -20726153 - AluSx SINE Alu -3 309 2 683 118 0 0 chr13 81147117 81147202 -20725967 - AluS SINE Alu -226 86 2 1848 106 8 4 chr13 81148021 81148277 -20724892 - AluSq SINE Alu -56 257 1 180 319 133 35 chr13 81148300 81148413 -20724756 - L3b LINE CR1 -197 1386 1263 217 280 32 80 chr13 81150167 81150292 -20722877 + L2 LINE L2 3195 3313 0 3101 69 6 0 chr13 81150426 81150788 -20722381 + THE1B LTR MaLR 1 364 0 202 366 61 38 chr13 81150989 81151120 -20722049 + L2 LINE L2 3108 3241 -31 394 283 67 8 chr13 81151225 81151345 -20721824 - MIR SINE MIR -123 139 13 740 154 54 0 chr13 81152086 81152216 -20720953 - L1MC3 LINE L1 -8 7777 7641 2682 243 89 22 chr13 81152424 81153551 -20719618 + L1ME3A LINE L1 4923 6139 -31 188 83 0 28 chr13 81154108 81154144 -20719025 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 481 294 72 58 chr13 81154400 81154747 -20718422 - L1ME LINE L1 -385 5736 5385 2643 92 6 0 chr13 81155858 81156204 -20716965 - L1PA13 LINE L1 -5 6158 5811 2329 101 10 0 chr13 81157761 81158067 -20715102 - AluSq SINE Alu -4 309 1 286 322 49 21 chr13 81158245 81158388 -20714781 + MIR3 SINE MIR 39 185 -23 227 191 15 0 chr13 81160217 81160285 -20712884 + GA-rich Low_complexity Low_complexity 2 70 0 24 0 0 0 chr13 81160713 81160737 -20712432 + AT_rich Low_complexity Low_complexity 1 24 0 180 200 0 0 chr13 81164089 81164129 -20709040 + CT-rich Low_complexity Low_complexity 5 44 0 1772 163 0 3 chr13 81165779 81166113 -20707056 + AluJo SINE Alu 1 333 0 2363 89 3 0 chr13 81166320 81166624 -20706545 - AluSg SINE Alu -5 305 1 350 269 109 33 chr13 81166665 81166796 -20706373 + MIR SINE MIR 41 181 -63 360 111 28 28 chr13 81166810 81166882 -20706287 + L1M3 LINE L1 5417 5488 -683 260 185 65 43 chr13 81166885 81166977 -20706192 + AluJ/FLAM SINE Alu 1 94 -208 262 231 26 13 chr13 81167103 81167181 -20705988 + L1MB4 LINE L1 5410 5488 -686 545 176 22 0 chr13 81167185 81167276 -20705893 + AluJ/FLAM SINE Alu 2 94 -218 * 591 178 47 9 chr13 81167273 81167380 -20705789 - AluJb SINE Alu -201 111 1 913 215 11 5 chr13 81167558 81167749 -20705420 + AluJb SINE Alu 120 311 -1 2436 151 20 35 chr13 81167749 81168200 -20704969 + L1MB4 LINE L1 5485 5928 -252 1732 194 12 12 chr13 81168213 81168549 -20704620 + MLT1A1 LTR MaLR 30 365 0 1419 151 50 4 chr13 81168552 81168791 -20704378 + L1MB4 LINE L1 5927 6176 -4 315 161 0 18 chr13 81168936 81168992 -20704177 - MER5B DNA MER1_type -15 163 109 499 298 97 26 chr13 81169352 81169580 -20703589 - MIR SINE MIR -6 256 13 43279 56 2 4 chr13 81170288 81174624 -20698545 + L1PA5 LINE L1 2 4324 -1830 2349 99 0 0 chr13 81174624 81174917 -20698252 - AluY SINE Alu -18 293 1 43279 56 2 4 chr13 81174917 81176744 -20696425 + L1PA5 LINE L1 4324 6152 -2 1618 155 19 11 chr13 81176844 81177115 -20696054 - AluJo SINE Alu -39 273 1 2214 119 7 0 chr13 81177323 81177617 -20695552 + AluSq SINE Alu 1 296 -17 1978 187 77 27 chr13 81177758 81178201 -20694968 + MLT1C LTR MaLR 3 467 0 1304 160 11 116 chr13 81179353 81179715 -20693454 + MER33 DNA MER1_type 1 324 0 2410 161 29 10 chr13 81180768 81181178 -20691991 - MSTB LTR MaLR 0 426 9 2247 115 0 0 chr13 81183114 81183410 -20689759 + AluSq SINE Alu 4 299 -14 248 246 167 39 chr13 81183492 81183650 -20689519 - MIR SINE MIR -56 206 30 2362 101 0 0 chr13 81183887 81184193 -20688976 + AluSg SINE Alu 1 306 -4 343 267 71 33 chr13 81184429 81184639 -20688530 - L1MDa LINE L1 -3612 2928 2711 253 289 50 30 chr13 81184652 81184865 -20688304 - L1MDa LINE L1 -3861 2679 2464 575 255 80 30 chr13 81184945 81185145 -20688024 - LTR52 LTR ERVL -155 266 57 1391 151 21 95 chr13 81185180 81185464 -20687705 - AluJo SINE Alu -49 263 1 257 232 106 0 chr13 81186342 81186438 -20686731 + L2 LINE L2 3187 3255 -17 233 309 230 20 chr13 81186795 81187047 -20686122 - L2 LINE L2 0 3272 2968 2344 86 0 10 chr13 81187218 81187521 -20685648 + AluSq SINE Alu 2 301 -12 304 283 56 35 chr13 81187922 81188120 -20685049 - HAL1 LINE L1 -10 2497 2296 1300 280 84 66 chr13 81188867 81189588 -20683581 - HAL1 LINE L1 -593 1914 1208 1801 167 10 7 chr13 81189588 81189888 -20683281 - AluJb SINE Alu -11 301 1 1300 280 84 66 chr13 81189888 81189997 -20683172 - HAL1 LINE L1 -1299 1208 1102 2569 45 0 16 chr13 81189997 81190308 -20682861 - AluY SINE Alu -5 306 1 1300 280 84 66 chr13 81190308 81190583 -20682586 - HAL1 LINE L1 -1405 1102 788 719 255 125 29 chr13 81190942 81191326 -20681843 - MLT1L LTR MaLR 0 615 195 325 203 72 0 chr13 81191379 81191448 -20681721 - MLT1L LTR MaLR -536 79 6 2298 131 21 5 chr13 81191644 81192032 -20681137 + MER57A LTR ERV1 10 403 0 842 232 117 3 chr13 81192508 81192903 -20680266 - MLT1J LTR MaLR -8 503 44 506 231 43 0 chr13 81192981 81193098 -20680071 - MIR SINE MIR -31 231 110 21 0 0 0 chr13 81194547 81194568 -20678601 + AT_rich Low_complexity Low_complexity 1 21 0 249 224 0 0 chr13 81194631 81194689 -20678480 + A-rich Low_complexity Low_complexity 1 58 0 220 204 26 18 chr13 81195122 81195235 -20677934 + (TA)n Simple_repeat Simple_repeat 1 114 0 191 122 0 49 chr13 81195241 81195282 -20677887 + (CATA)n Simple_repeat Simple_repeat 4 42 0 3418 184 24 25 chr13 81196015 81196772 -20676397 - L1MA10 LINE L1 0 6334 5579 2128 122 26 0 chr13 81197110 81197414 -20675755 + AluSx SINE Alu 1 312 0 2171 123 7 0 chr13 81198788 81199081 -20674088 - AluSx SINE Alu -13 299 5 1736 228 6 3 chr13 81199278 81199642 -20673527 - MLT1A1 LTR MaLR 0 365 1 2373 89 0 3 chr13 81199878 81200180 -20672989 + AluSc SINE Alu 1 301 -8 940 214 47 23 chr13 81200208 81200423 -20672746 + MER58A DNA MER1_type 1 220 -4 1818 179 11 16 chr13 81200772 81201136 -20672033 - MLT1A1 LTR MaLR 0 365 4 279 313 49 0 chr13 81203094 81203238 -20669931 + L1M4 LINE L1 2728 2878 -3268 579 277 89 90 chr13 81203308 81205621 -20667548 - L1MCa LINE L1 -848 5578 3266 619 210 0 0 chr13 81205621 81205740 -20667429 - L1PA16 LINE L1 -3 6163 6045 579 277 89 90 chr13 81205740 81206546 -20666623 - L1MCa LINE L1 -3160 3266 2461 2835 154 8 9 chr13 81206609 81207135 -20666034 - L1MC3 LINE L1 -1 7784 7260 874 174 6 18 chr13 81207135 81207302 -20665867 + MER2 DNA MER2_type 9 173 -172 977 191 54 41 chr13 81207555 81207869 -20665300 - L1MCa LINE L1 -4425 2001 1684 2564 251 59 61 chr13 81207870 81208017 -20665152 + L2 LINE L2 2200 2346 -967 1338 207 67 4 chr13 81208017 81208287 -20664882 + AluJo SINE Alu 1 287 -25 2564 251 59 61 chr13 81208287 81209089 -20664080 + L2 LINE L2 2346 3138 -175 1515 158 105 4 chr13 81209089 81209355 -20663814 - AluJb SINE Alu -9 303 11 2564 251 59 61 chr13 81209355 81209531 -20663638 + L2 LINE L2 3138 3313 0 210 128 0 0 chr13 81209853 81209892 -20663277 + (TC)n Simple_repeat Simple_repeat 2 40 0 231 269 25 34 chr13 81210063 81210182 -20662987 + L1MEd LINE L1 1005 1122 -4997 * 3893 255 12 7 chr13 81210174 81211359 -20661810 - L1PA16 LINE L1 -2306 3840 2650 6034 175 12 15 chr13 81211360 81213666 -20659503 + L1PA16 LINE L1 3869 6166 0 21 0 0 0 chr13 81213668 81213689 -20659480 + AT_rich Low_complexity Low_complexity 1 21 0 2337 235 32 41 chr13 81215333 81215523 -20657646 + L1ME1 LINE L1 5416 5606 -560 2037 138 3 0 chr13 81215523 81215819 -20657350 + AluSx SINE Alu 1 297 -15 2337 235 32 41 chr13 81215819 81216381 -20656788 + L1ME1 LINE L1 5606 6161 -5 315 122 0 0 chr13 81216403 81216452 -20656717 + (GGAA)n Simple_repeat Simple_repeat 1 49 0 272 289 33 11 chr13 81216461 81216551 -20656618 + MIR SINE MIR 161 252 -10 261 83 0 0 chr13 81216554 81216590 -20656579 + (TTA)n Simple_repeat Simple_repeat 3 38 0 285 319 0 17 chr13 81216595 81216711 -20656458 + MIR SINE MIR 138 251 -11 295 303 22 0 chr13 81217089 81217178 -20655991 - MIR SINE MIR -16 246 156 186 43 0 0 chr13 81217180 81217203 -20655966 + (CAT)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr13 81217822 81217848 -20655321 + AT_rich Low_complexity Low_complexity 1 26 0 2076 120 3 0 chr13 81218165 81218486 -20654683 + AluSg SINE Alu 1 322 0 1331 180 29 14 chr13 81218560 81218838 -20654331 + L1MB3 LINE L1 5776 6057 -126 712 73 0 0 chr13 81218841 81218937 -20654232 + L1PA5 LINE L1 6058 6153 -1 829 108 23 0 chr13 81218937 81219063 -20654106 + L1MB3 LINE L1 6050 6181 -2 257 100 50 0 chr13 81219985 81220025 -20653144 + MER3 DNA MER1_type 1 42 -167 842 204 19 9 chr13 81220026 81220237 -20652932 - MER63 DNA MER1_type -1 1059 847 716 166 43 43 chr13 81220241 81220404 -20652765 + MER3 DNA MER1_type 47 209 0 233 310 69 0 chr13 81221685 81221772 -20651397 + L2 LINE L2 3149 3241 -31 502 234 190 6 chr13 81222099 81222257 -20650912 + MIR3 SINE MIR 15 201 -7 621 261 85 62 chr13 81222599 81222760 -20650409 + LTR16A LTR ERVL 1 157 -300 1875 238 65 26 chr13 81222760 81223294 -20649875 + MLT1H1 LTR MaLR 1 555 0 621 261 85 62 chr13 81223294 81223575 -20649594 + LTR16A LTR ERVL 157 455 -2 21 0 0 0 chr13 81224591 81224612 -20648557 + AT_rich Low_complexity Low_complexity 1 21 0 347 257 40 72 chr13 81225815 81225967 -20647202 + MER5A DNA MER1_type 3 149 -40 889 207 25 35 chr13 81226520 81226723 -20646446 + MIR SINE MIR 2 202 -60 278 298 0 12 chr13 81226761 81226845 -20646324 + L2 LINE L2 3231 3313 0 22 56 0 0 chr13 81227630 81227666 -20645503 + AT_rich Low_complexity Low_complexity 1 36 0 2507 92 20 0 chr13 81229130 81229478 -20643691 - THE1A LTR MaLR 0 355 1 4897 109 19 0 chr13 81229770 81230524 -20642645 - L1PA15 LINE L1 -3 6162 5395 1161 189 45 0 chr13 81230533 81230734 -20642435 - AluJb SINE Alu -1 311 102 238 100 50 0 chr13 81230865 81230905 -20642264 + Alu SINE Alu 106 147 -156 1318 162 21 118 chr13 81230916 81231256 -20641913 + AluJb SINE Alu 1 307 -5 1336 261 83 74 chr13 81231259 81231342 -20641827 - L2 LINE L2 -102 3211 3130 1209 210 140 29 chr13 81231342 81231757 -20641412 + MLT1C LTR MaLR 5 465 -2 1336 261 83 74 chr13 81231757 81232398 -20640771 - L2 LINE L2 -183 3130 2484 1907 154 3 31 chr13 81232636 81232955 -20640214 + AluJb SINE Alu 1 310 -2 280 322 11 40 chr13 81233094 81233271 -20639898 - L1MC4a LINE L1 -1902 5906 5735 614 256 87 0 chr13 81233309 81233481 -20639688 - MIR SINE MIR -10 252 66 698 313 45 14 chr13 81233534 81233886 -20639283 - L1MC4a LINE L1 -2151 5657 5295 1413 346 108 67 chr13 81234192 81235221 -20637948 + L3 LINE CR1 450 1520 -57 332 324 117 50 chr13 81235786 81236144 -20637025 + L2 LINE L2 2813 3194 -78 2414 80 6 10 chr13 81236153 81236464 -20636705 - AluSp SINE Alu -1 312 3 192 77 0 0 chr13 81236536 81236562 -20636607 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2078 126 3 16 chr13 81237533 81237843 -20635326 - AluSx SINE Alu -6 306 1 389 284 97 13 chr13 81240032 81240187 -20632982 - MIR3 SINE MIR -25 183 16 391 231 83 16 chr13 81240268 81240389 -20632780 + MIR SINE MIR 78 206 -56 180 327 168 0 chr13 81240508 81240609 -20632560 - MIR SINE MIR -72 136 19 336 329 106 35 chr13 81240745 81240915 -20632254 - MER5A DNA MER1_type -1 188 7 2179 81 0 7 chr13 81241799 81242072 -20631097 - AluSq SINE Alu -42 271 1 461 339 86 9 chr13 81242089 81242322 -20630847 - MIR SINE MIR -9 253 3 199 244 0 0 chr13 81242331 81242372 -20630797 - L2 LINE L2 -19 3253 3213 767 223 13 40 chr13 81242430 81242654 -20630515 + MER20 DNA MER1_type 1 218 -1 208 290 100 10 chr13 81242707 81242807 -20630362 - L2 LINE L2 -218 3054 2946 309 373 125 10 chr13 81243428 81243723 -20629446 + L2 LINE L2 1716 2044 -1270 5632 122 17 3 chr13 81244114 81245796 -20627373 + L1PA16 LINE L1 4469 6157 -9 31 0 0 0 chr13 81245796 81245827 -20627342 + AT_rich Low_complexity Low_complexity 1 31 0 2643 206 40 14 chr13 81245855 81246512 -20626657 + L1MB7 LINE L1 5488 6161 -23 426 336 75 53 chr13 81248490 81248769 -20624400 - L3 LINE CR1 -1 1576 1288 2322 111 0 0 chr13 81248769 81249067 -20624102 - AluSq SINE Alu -15 298 1 426 336 75 53 chr13 81249067 81249105 -20624064 - L3 LINE CR1 -289 1288 1252 348 164 43 26 chr13 81249357 81249473 -20623696 + Charlie7 DNA MER1_type 34 151 -2461 265 259 9 37 chr13 81249474 81249582 -20623587 + Charlie7 DNA MER1_type 2508 2612 0 22 0 0 0 chr13 81251404 81251426 -20621743 + AT_rich Low_complexity Low_complexity 1 22 0 473 271 75 50 chr13 81251431 81251630 -20621539 + MIR SINE MIR 1 204 -58 1047 203 132 7 chr13 81252433 81252714 -20620455 - MLT1F1 LTR MaLR -38 529 214 746 267 66 11 chr13 81252728 81253001 -20620168 - MLT1F LTR MaLR -254 288 1 1999 145 3 0 chr13 81253100 81253396 -20619773 + AluJo SINE Alu 1 297 -15 180 0 0 0 chr13 81253799 81253819 -20619350 + (T)n Simple_repeat Simple_repeat 1 20 0 311 303 42 50 chr13 81254313 81254432 -20618737 - L2 LINE L2 -4 3268 3151 1229 53 0 0 chr13 81255720 81255872 -20617297 + L1PA3 LINE L1 6001 6152 -3 42 0 0 0 chr13 81255872 81255914 -20617255 + AT_rich Low_complexity Low_complexity 1 42 0 271 283 69 38 chr13 81259446 81259605 -20613564 - MLT1H LTR MaLR -262 287 124 1453 174 0 51 chr13 81260163 81260456 -20612713 + AluJo SINE Alu 1 278 -34 1414 163 18 4 chr13 81260606 81260833 -20612336 - AluJo SINE Alu -80 232 3 2715 173 18 15 chr13 81260957 81261501 -20611668 - L1MB1 LINE L1 0 6168 5623 728 129 16 32 chr13 81261501 81261625 -20611544 + AluSp/q SINE Alu 182 303 -10 1341 140 4 63 chr13 81261625 81261896 -20611273 - L1MB1 LINE L1 -679 5633 5379 780 195 35 12 chr13 81262373 81262542 -20610627 - MER45A DNA AcHobo -3 175 3 24 0 0 0 chr13 81263343 81263367 -20609802 + AT_rich Low_complexity Low_complexity 1 24 0 245 307 23 0 chr13 81265311 81265399 -20607770 + L1MCb LINE L1 169 258 -5787 1070 191 19 24 chr13 81265689 81265899 -20607270 + AluJo SINE Alu 12 220 -92 307 95 0 0 chr13 81265899 81265941 -20607228 + AluSg/x SINE Alu 84 125 -175 201 405 6 12 chr13 81266051 81266219 -20606950 + GA-rich Low_complexity Low_complexity 3 169 0 1388 213 125 0 chr13 81266866 81267266 -20605903 - L1MC3 LINE L1 -1 7784 7335 790 171 41 6 chr13 81267266 81267672 -20605497 - MLT1E3 LTR MaLR -177 449 3 1852 185 0 0 chr13 81267871 81268169 -20605000 + AluJb SINE Alu 1 298 -14 24 32 0 0 chr13 81268172 81268203 -20604966 + AT_rich Low_complexity Low_complexity 1 31 0 252 220 34 0 chr13 81268367 81268426 -20604743 - MER2 DNA MER2_type -5 340 280 299 173 48 29 chr13 81268427 81268531 -20604638 + (CAATA)n Simple_repeat Simple_repeat 4 109 0 1214 122 14 33 chr13 81268533 81268747 -20604422 - MER2 DNA MER2_type -135 210 1 1943 151 71 15 chr13 81269630 81270022 -20603147 + L1MA4A LINE L1 5885 6298 -5 1958 112 0 0 chr13 81270027 81270285 -20602884 + AluSx SINE Alu 1 258 -54 1367 84 6 6 chr13 81270334 81270513 -20602656 - AluSp SINE Alu -134 179 1 261 305 71 45 chr13 81270691 81270845 -20602324 + L2 LINE L2 2625 2782 -532 317 217 304 14 chr13 81271092 81271230 -20601939 + MER5B DNA MER1_type 1 178 0 305 270 60 75 chr13 81272243 81272443 -20600726 + L1M2 LINE L1 897 1093 -5756 269 289 96 30 chr13 81273356 81273491 -20599678 + MER115 DNA AcHobo 21 164 -529 299 179 18 0 chr13 81273502 81273558 -20599611 + MER5A DNA MER1_type 12 68 -121 348 232 50 0 chr13 81273642 81273741 -20599428 + MER115 DNA AcHobo 175 278 -415 624 212 87 37 chr13 81273868 81274109 -20599060 + MER115 DNA AcHobo 439 691 -2 185 288 0 68 chr13 81274333 81274406 -20598763 - L2 LINE L2 0 3272 3205 21 36 0 0 chr13 81275771 81275799 -20597370 + AT_rich Low_complexity Low_complexity 1 28 0 280 189 160 19 chr13 81276159 81276265 -20596904 - L1ME4a LINE L1 -18 6103 5983 1711 123 111 9 chr13 81276353 81276677 -20596492 - THE1C LTR MaLR 0 375 19 563 190 0 33 chr13 81276672 81276793 -20596376 - THE1C LTR MaLR -258 117 1 * 1904 122 43 7 chr13 81277111 81277389 -20595780 - AluSq SINE Alu -25 288 1 348 267 84 52 chr13 81278310 81278562 -20594607 - L1MDa LINE L1 -3891 2324 2111 473 254 52 36 chr13 81278753 81278946 -20594223 - MER112 DNA MER1_type -5 255 60 503 114 0 13 chr13 81279132 81279211 -20593958 + L1PA10 LINE L1 6087 6164 -4 346 269 0 0 chr13 81279224 81279328 -20593841 - HAL1b LINE L1 -835 513 410 1802 199 0 0 chr13 81279354 81279666 -20593503 - AluJo SINE Alu 0 312 1 308 349 65 43 chr13 81279698 81279976 -20593193 - L1MDa LINE L1 -4862 1343 1060 1728 157 3 69 chr13 81280006 81280338 -20592831 - AluSx SINE Alu -2 310 1 29 0 0 0 chr13 81280584 81280613 -20592556 + AT_rich Low_complexity Low_complexity 1 29 0 2121 209 104 35 chr13 81280941 81281711 -20591458 - L1MC4 LINE L1 -124 7918 7096 282 150 12 25 chr13 81281721 81281801 -20591368 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 1856 167 0 28 chr13 81281888 81282206 -20590963 + AluJo SINE Alu 1 309 -3 1987 126 7 31 chr13 81282316 81282610 -20590559 - AluSx SINE Alu -25 287 1 2364 75 3 0 chr13 81283180 81283473 -20589696 - AluSp SINE Alu -19 294 1 187 263 0 0 chr13 81283764 81283802 -20589367 - MIR SINE MIR -14 248 211 279 184 13 40 chr13 81283806 81283882 -20589287 - MER5C DNA MER1_type -2 322 249 418 292 25 0 chr13 81284006 81284126 -20589043 - MER5C DNA MER1_type -201 123 1 390 324 47 0 chr13 81284146 81284294 -20588875 - MIR SINE MIR -73 189 35 190 271 0 0 chr13 81284306 81284354 -20588815 - MIR SINE MIR -195 67 20 252 254 34 0 chr13 81284620 81284679 -20588490 - MIR SINE MIR -112 150 90 283 286 63 16 chr13 81284703 81284829 -20588340 - MER94 DNA DNA 0 134 3 429 331 50 0 chr13 81284971 81285110 -20588059 - L2 LINE L2 0 3272 3127 596 236 35 0 chr13 81285112 81285256 -20587913 - MER45A DNA AcHobo 0 178 30 1017 260 51 4 chr13 81285575 81285953 -20587216 + LTR16A LTR ERVL 1 450 0 3641 125 37 50 chr13 81286956 81287677 -20585492 - L1MA4A LINE L1 -3 6300 5589 1564 164 23 33 chr13 81287819 81288362 -20584807 - L1MA4A LINE L1 -715 5588 5048 639 237 44 2 chr13 81288371 81288555 -20584614 + L1MA10 LINE L1 5983 6334 0 1123 252 64 22 chr13 81288896 81288921 -20584248 - L1ME3A LINE L1 -97 6073 6051 2560 53 0 0 chr13 81288921 81289220 -20583949 - AluY SINE Alu -12 299 1 1123 252 64 22 chr13 81289220 81289978 -20583191 - L1ME3A LINE L1 -119 6051 5252 453 82 49 0 chr13 81289999 81290060 -20583109 + U6 snRNA snRNA 1 64 -43 983 138 6 6 chr13 81290065 81290225 -20582944 - MER5A DNA MER1_type -28 161 2 22 0 0 0 chr13 81293976 81293998 -20579171 + AT_rich Low_complexity Low_complexity 1 22 0 330 266 102 16 chr13 81294250 81294378 -20578791 + MIR SINE MIR 32 170 -92 280 307 79 8 chr13 81294669 81294689 -20578480 + MIR SINE MIR 78 95 -167 2352 105 0 0 chr13 81294689 81294993 -20578176 + AluSx SINE Alu 1 304 -8 280 307 79 8 chr13 81294993 81295099 -20578070 + MIR SINE MIR 95 213 -49 27 0 0 0 chr13 81298609 81298636 -20574533 + GC_rich Low_complexity Low_complexity 1 27 0 228 136 250 0 chr13 81300123 81300167 -20573002 - L2 LINE L2 -5 3308 3254 21 0 0 0 chr13 81300523 81300544 -20572625 + AT_rich Low_complexity Low_complexity 1 21 0 253 269 30 0 chr13 81301832 81301899 -20571270 - L2 LINE L2 0 3313 3245 203 288 82 14 chr13 81302195 81302268 -20570901 - MIR SINE MIR -64 198 121 1750 184 7 0 chr13 81302700 81302999 -20570170 + AluJo SINE Alu 1 301 -11 23 0 0 0 chr13 81303566 81303589 -20569580 + AT_rich Low_complexity Low_complexity 1 23 0 2386 89 3 0 chr13 81303679 81303981 -20569188 - AluSx SINE Alu -9 303 1 208 317 142 17 chr13 81304244 81304364 -20568805 - MIR3 SINE MIR -71 137 3 235 306 0 0 chr13 81306248 81306310 -20566859 - MIR SINE MIR -115 147 86 254 306 14 0 chr13 81306714 81306786 -20566383 + L2 LINE L2 3196 3268 -4 3003 171 108 36 chr13 81306929 81307678 -20565491 - L1MC4a LINE L1 -1 7807 7005 2289 106 0 13 chr13 81307792 81308104 -20565065 + AluSg SINE Alu 1 308 -2 288 0 0 0 chr13 81308170 81308202 -20564967 + (GA)n Simple_repeat Simple_repeat 1 32 0 2140 67 45 0 chr13 81311474 81311786 -20561383 - AluY SINE Alu 0 324 1 546 218 205 13 chr13 81312091 81312247 -20560922 + MER5A DNA MER1_type 4 189 0 22 56 0 0 chr13 81312630 81312666 -20560503 + AT_rich Low_complexity Low_complexity 1 36 0 2028 174 40 29 chr13 81313353 81313900 -20559269 + MLT2A2 LTR ERVL 1 554 0 258 32 0 0 chr13 81314326 81314357 -20558812 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 260 366 70 28 chr13 81314358 81314500 -20558669 - L2 LINE L2 -14 3258 3111 243 355 83 8 chr13 81314560 81314681 -20558488 + L2 LINE L2 3093 3222 -50 236 182 45 0 chr13 81314843 81314887 -20558282 + L2 LINE L2 3223 3268 -4 1538 227 24 0 chr13 81315905 81316236 -20556933 - L1MA9 LINE L1 -543 5769 5431 1343 172 23 71 chr13 81316227 81316581 -20556588 + L1MA9 LINE L1 5774 6110 -202 * 25 51 0 0 chr13 81316871 81316910 -20556259 + AT_rich Low_complexity Low_complexity 1 39 0 2121 123 3 0 chr13 81316915 81317217 -20555952 + AluSx SINE Alu 1 303 -9 1517 161 3 70 chr13 81317469 81317767 -20555402 - AluJo SINE Alu -34 278 1 453 133 0 0 chr13 81318016 81318076 -20555093 + AluS SINE Alu 2 61 -257 346 238 0 12 chr13 81318417 81318497 -20554672 - MLT1C LTR MaLR -2 465 387 1375 120 10 0 chr13 81318497 81318711 -20554458 + AluSq SINE Alu 90 305 0 325 296 80 17 chr13 81318803 81318979 -20554190 - MIR3 SINE MIR -2 206 20 457 302 135 8 chr13 81319062 81319307 -20553862 + L1ME4a LINE L1 5753 6028 -93 2080 218 97 29 chr13 81319972 81320667 -20552502 - L1ME1 LINE L1 -10 6154 5432 1398 200 114 53 chr13 81320921 81321351 -20551818 - MLT1C LTR MaLR -6 461 6 216 367 158 0 chr13 81321354 81321531 -20551638 - MIR SINE MIR -23 239 35 331 255 196 33 chr13 81321680 81321833 -20551336 + MER5B DNA MER1_type 1 178 0 1447 92 42 5 chr13 81322597 81322814 -20550355 - L1MA2 LINE L1 0 6304 6080 192 250 0 125 chr13 81324539 81324603 -20548566 - L3 LINE CR1 -10 1567 1512 239 291 9 73 chr13 81324637 81324747 -20548422 - MLT1K LTR MaLR -343 245 143 197 364 0 0 chr13 81324858 81324935 -20548234 - MIR SINE MIR -22 240 164 308 308 67 8 chr13 81325252 81325372 -20547797 - MIR SINE MIR -112 150 24 683 101 176 25 chr13 81326125 81326244 -20546925 + AluJb SINE Alu 162 298 -14 414 271 8 30 chr13 81326268 81326366 -20546803 + MIR SINE MIR 102 198 -64 2242 110 0 0 chr13 81326366 81326667 -20546502 + AluSg SINE Alu 3 303 -7 414 271 8 30 chr13 81326667 81326701 -20546468 + MIR SINE MIR 198 231 -31 399 41 0 0 chr13 81327616 81327665 -20545504 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 2172 125 0 0 chr13 81327666 81327955 -20545214 - AluSx SINE Alu -23 289 1 2411 142 16 8 chr13 81328082 81328469 -20544700 + MLT1B LTR MaLR 1 390 0 23 33 0 0 chr13 81328504 81328534 -20544635 + AT_rich Low_complexity Low_complexity 1 30 0 348 273 188 0 chr13 81329362 81329490 -20543679 + MIR3 SINE MIR 54 205 -3 338 220 91 68 chr13 81329811 81329943 -20543226 + MIR SINE MIR 18 152 -110 2312 89 3 16 chr13 81330287 81330600 -20542569 - AluSc SINE Alu 0 309 1 1619 103 0 0 chr13 81330600 81330813 -20542356 - AluSg/x SINE Alu -8 302 90 2252 101 7 0 chr13 81331297 81331594 -20541575 - AluSp SINE Alu -14 299 1 2143 139 0 0 chr13 81332342 81332643 -20540526 + AluSx SINE Alu 1 301 -11 208 386 98 0 chr13 81332921 81333053 -20540116 - L2 LINE L2 -1 3271 3127 * 305 291 22 16 chr13 81333030 81333132 -20540037 - MIR SINE MIR -73 135 36 1727 159 41 7 chr13 81333406 81333696 -20539473 - AluJb SINE Alu -12 300 1 263 339 51 95 chr13 81333800 81334116 -20539053 - L2 LINE L2 -4 3268 2967 278 305 0 32 chr13 81334170 81334265 -20538904 + L2 LINE L2 3155 3246 -26 1247 167 53 18 chr13 81334653 81334881 -20538288 - MER46A DNA MER2_type 0 236 1 2335 54 10 20 chr13 81335778 81336076 -20537093 - AluSx SINE Alu -17 295 1 392 274 125 28 chr13 81337669 81337917 -20535252 + L2 LINE L2 2325 2596 -718 1231 121 0 0 chr13 81338445 81338610 -20534559 - AluSq SINE Alu -148 165 1 620 276 117 6 chr13 81340305 81340582 -20532587 + L1MB7 LINE L1 5857 6174 -5 2122 109 17 17 chr13 81342023 81342317 -20530852 + AluSx SINE Alu 1 294 -18 621 223 139 58 chr13 81342425 81342734 -20530435 + L1MC4 LINE L1 7709 8042 0 447 249 93 93 chr13 81342735 81342972 -20530197 + MIR SINE MIR 26 262 0 2378 84 0 19 chr13 81343014 81343323 -20529846 - AluSc SINE Alu -6 303 1 553 311 39 5 chr13 81343355 81343561 -20529608 + L2 LINE L2 3100 3312 -1 2112 118 0 0 chr13 81344592 81344872 -20528297 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr13 81344872 81344896 -20528273 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2162 85 4 7 chr13 81344900 81345225 -20527944 + AluSg SINE Alu 1 324 0 1128 147 5 47 chr13 81346941 81347131 -20526038 - AluJb SINE Alu -44 268 87 2145 111 6 22 chr13 81347190 81347505 -20525664 - AluSq SINE Alu -3 310 1 2063 144 0 0 chr13 81347507 81347821 -20525348 - AluSx SINE Alu 0 312 1 2396 97 0 0 chr13 81349237 81349535 -20523634 + AluSq SINE Alu 3 300 -13 378 0 0 0 chr13 81349562 81349604 -20523565 + (T)n Simple_repeat Simple_repeat 1 42 0 1200 136 0 0 chr13 81349940 81350116 -20523053 + AluSg/x SINE Alu 133 308 -2 2099 129 7 0 chr13 81351141 81351451 -20521718 + AluSx SINE Alu 1 312 0 201 147 0 0 chr13 81352180 81352214 -20520955 + (A)n Simple_repeat Simple_repeat 1 34 0 2333 89 0 0 chr13 81352787 81353078 -20520091 - AluSc SINE Alu -18 291 1 243 0 0 0 chr13 81353682 81353709 -20519460 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2183 93 0 0 chr13 81353860 81354138 -20519031 + AluSc SINE Alu 32 309 0 381 320 79 6 chr13 81354233 81354411 -20518758 + MIR SINE MIR 52 242 -20 487 203 113 57 chr13 81354441 81354618 -20518551 - MER112 DNA MER1_type -9 251 65 313 243 261 0 chr13 81354753 81354864 -20518305 + MIR SINE MIR 53 192 -70 364 284 56 20 chr13 81355415 81355598 -20517571 - MIR SINE MIR -68 140 4 3138 182 70 6 chr13 81356268 81356901 -20516268 - L1MB3 LINE L1 -7 6176 5504 408 20 0 0 chr13 81357129 81357178 -20515991 + (TG)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr13 81358027 81358049 -20515120 + (CA)n Simple_repeat Simple_repeat 1 22 0 833 226 73 5 chr13 81358526 81358730 -20514439 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr13 81359497 81359518 -20513651 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr13 81360582 81360610 -20512559 + (TA)n Simple_repeat Simple_repeat 1 28 0 186 43 0 0 chr13 81360789 81360812 -20512357 + (CA)n Simple_repeat Simple_repeat 1 23 0 255 61 0 0 chr13 81360812 81360845 -20512324 + (TG)n Simple_repeat Simple_repeat 1 33 0 187 275 113 28 chr13 81361327 81361469 -20511700 + L2 LINE L2 2297 2450 -864 1019 238 48 24 chr13 81361800 81362094 -20511075 - L1ME4a LINE L1 -284 5837 5537 301 347 46 12 chr13 81362886 81363059 -20510110 - MIR SINE MIR -48 214 36 300 214 34 34 chr13 81363846 81363935 -20509234 - MER5A DNA MER1_type -75 114 26 1901 133 29 0 chr13 81364654 81364932 -20508237 + AluSx SINE Alu 1 286 -26 208 379 42 0 chr13 81365570 81365665 -20507504 - L2 LINE L2 -28 3244 3146 2443 172 41 31 chr13 81365753 81366241 -20506928 - L1MB3 LINE L1 -1 6182 5690 1882 149 0 14 chr13 81366268 81366564 -20506605 + AluSx SINE Alu 1 292 -20 2452 110 48 20 chr13 81367213 81367567 -20505602 + THE1B LTR MaLR 1 364 0 2195 103 0 0 chr13 81368489 81368770 -20504399 + AluSq SINE Alu 1 281 -32 993 210 68 5 chr13 81371278 81371483 -20501686 + MER58A DNA MER1_type 2 219 -5 263 377 138 7 chr13 81372256 81372394 -20500775 + L2 LINE L2 3099 3254 -18 1571 113 14 0 chr13 81372862 81373075 -20500094 - AluSq SINE Alu -97 216 1 1278 177 177 16 chr13 81373082 81373330 -20499839 - AluJo SINE Alu -13 289 2 1952 151 7 3 chr13 81373644 81373948 -20499221 - AluJb SINE Alu -7 305 1 1388 118 0 15 chr13 81374551 81374755 -20498414 + AluSg/x SINE Alu 112 312 0 2263 125 0 3 chr13 81375863 81376176 -20496993 + AluSx SINE Alu 1 312 0 261 0 0 0 chr13 81376700 81376729 -20496440 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 725 81 0 0 chr13 81376732 81376819 -20496350 - AluSp/q SINE Alu -37 276 190 1927 106 4 11 chr13 81376819 81377083 -20496086 - AluSp SINE Alu -51 262 1 1941 143 11 0 chr13 81378029 81378333 -20494836 + AluSx SINE Alu 1 307 0 211 296 0 0 chr13 81379153 81379207 -20493962 - L2 LINE L2 -72 3200 3147 384 261 20 78 chr13 81379767 81379825 -20493344 - MIR SINE MIR -11 251 191 2109 133 13 0 chr13 81379825 81380133 -20493036 - AluSx SINE Alu 0 312 1 384 261 20 78 chr13 81380133 81380227 -20492942 - MIR SINE MIR -71 191 108 733 247 54 5 chr13 81380431 81380617 -20492552 - MIR SINE MIR -8 254 60 1977 147 0 3 chr13 81381467 81381779 -20491390 + AluSx SINE Alu 1 311 -1 371 275 69 19 chr13 81382084 81382244 -20490925 - MIR SINE MIR -9 253 86 288 0 0 0 chr13 81382398 81382430 -20490739 + (TG)n Simple_repeat Simple_repeat 1 32 0 217 0 61 0 chr13 81383516 81383549 -20489620 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1655 112 151 4 chr13 81383554 81383812 -20489357 + AluSx SINE Alu 1 296 -16 833 271 117 26 chr13 81384638 81385518 -20487651 + L1 LINE L1 2558 3517 -2629 425 284 96 66 chr13 81385576 81385650 -20487519 + L1 LINE L1 3640 3710 -2436 1764 108 68 0 chr13 81385650 81385900 -20487269 + AluSg SINE Alu 3 269 -41 425 284 96 66 chr13 81385900 81386096 -20487073 + L1 LINE L1 3710 3918 -2228 687 136 39 0 chr13 81386103 81386206 -20486963 + AluSg/x SINE Alu 195 301 -8 702 253 11 0 chr13 81386228 81386418 -20486751 + L1PB1 LINE L1 6 197 -6666 13358 187 55 10 chr13 81386418 81391597 -20481572 + L1PB1 LINE L1 909 6523 -344 477 0 0 0 chr13 81391597 81391650 -20481519 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 13358 187 55 10 chr13 81391650 81392010 -20481159 + L1PB1 LINE L1 6523 6866 -1 297 206 35 78 chr13 81392163 81392304 -20480865 + L1M LINE L1 5259 5393 -785 * 2153 251 89 46 chr13 81392287 81392372 -20480797 + L1ME2 LINE L1 979 1059 -5156 724 138 29 72 chr13 81392372 81392510 -20480659 + FLAM_C SINE Alu 2 133 0 2153 251 89 46 chr13 81392510 81393771 -20479398 + L1ME2 LINE L1 1059 2349 -3866 1491 248 73 61 chr13 81393770 81394164 -20479005 + L1ME2 LINE L1 2617 3005 -3210 * 2195 130 0 0 chr13 81394164 81394463 -20478706 + AluSx SINE Alu 1 299 -13 1491 248 73 61 chr13 81394463 81394996 -20478173 + L1ME2 LINE L1 3005 3555 -2660 2229 235 107 28 chr13 81395024 81395811 -20477358 + L1ME2 LINE L1 5384 6232 -1 271 267 170 24 chr13 81398275 81398440 -20474729 - MIR SINE MIR -71 191 3 1705 189 0 3 chr13 81398445 81398746 -20474423 - AluJo SINE Alu -2 310 11 419 217 0 35 chr13 81398750 81398865 -20474304 - AluJo SINE Alu -161 141 31 883 217 11 11 chr13 81399639 81399828 -20473341 - AluJb SINE Alu -7 305 117 2078 80 42 7 chr13 81399828 81400114 -20473055 - AluSx SINE Alu -16 296 1 325 277 43 76 chr13 81400260 81400373 -20472796 + MER5B DNA MER1_type 1 116 -62 416 19 19 0 chr13 81400373 81400426 -20472743 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2285 94 3 0 chr13 81400433 81400721 -20472448 - AluSp SINE Alu -23 290 2 325 277 43 76 chr13 81400721 81400783 -20472386 + MER5B DNA MER1_type 122 178 0 1725 117 0 0 chr13 81401844 81402067 -20471102 - AluSx SINE Alu -89 223 1 288 254 67 14 chr13 81402356 81402501 -20470668 + MIR SINE MIR 29 189 -69 180 0 0 0 chr13 81402521 81402541 -20470628 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 2122 117 0 0 chr13 81402548 81402830 -20470339 - AluY SINE Alu -29 282 1 589 195 93 0 chr13 81402843 81402961 -20470208 - FAM SINE Alu -31 154 26 2239 116 0 0 chr13 81402991 81403284 -20469885 - AluSg SINE Alu -17 293 1 1772 163 28 3 chr13 81403286 81403574 -20469595 - AluSx SINE Alu -17 295 1 2194 119 10 0 chr13 81403604 81403914 -20469255 - AluSq SINE Alu 0 313 1 862 208 19 0 chr13 81404532 81404691 -20468478 + FRAM SINE Alu 1 158 -18 2545 45 3 0 chr13 81404694 81404982 -20468187 + AluSg SINE Alu 1 289 -21 688 291 77 35 chr13 81404985 81405218 -20467951 + L1MEc LINE L1 1587 1846 -4550 1289 205 75 7 chr13 81405218 81405496 -20467673 + AluSx SINE Alu 1 297 -15 688 291 77 35 chr13 81405496 81405664 -20467505 + L1MEc LINE L1 1846 2005 -4391 * 779 263 101 3 chr13 81405656 81405983 -20467186 + L1MEc LINE L1 2785 3143 -3072 1086 172 0 0 chr13 81406746 81406915 -20466254 - AluJo SINE Alu -138 174 6 206 250 0 0 chr13 81408317 81408365 -20464804 + (CA)n Simple_repeat Simple_repeat 2 49 0 307 193 12 60 chr13 81408968 81409051 -20464118 - MIR3 SINE MIR -49 159 81 283 285 51 58 chr13 81409260 81409397 -20463772 - MER91A DNA MER1_type -24 172 37 743 133 26 0 chr13 81409493 81409606 -20463563 + FLAM_C SINE Alu 2 117 -26 7684 22 3 0 chr13 81409653 81410733 -20462436 - L1PA4 LINE L1 -5 6150 5071 1639 161 35 11 chr13 81410749 81411034 -20462135 + AluJb SINE Alu 1 292 -20 374 244 141 15 chr13 81411655 81411790 -20461379 - MLT1L LTR MaLR -156 459 308 336 196 9 28 chr13 81411790 81411897 -20461272 + GA-rich Low_complexity Low_complexity 1 105 0 473 228 102 92 chr13 81411921 81411985 -20461184 - MLT1L LTR MaLR -325 290 228 2109 124 0 7 chr13 81411985 81412276 -20460893 - AluSx SINE Alu -23 289 1 473 228 102 92 chr13 81412276 81412417 -20460752 - MLT1L LTR MaLR -387 228 83 1958 166 0 0 chr13 81412445 81412740 -20460429 + AluJo SINE Alu 1 295 -17 2199 105 0 0 chr13 81412965 81413251 -20459918 + AluSx SINE Alu 1 286 -26 320 0 25 0 chr13 81413251 81413291 -20459878 + (CA)n Simple_repeat Simple_repeat 2 42 0 1387 260 139 26 chr13 81413350 81413819 -20459350 + MLT1E LTR MaLR 48 569 -24 2308 95 3 0 chr13 81413841 81414136 -20459033 + AluSq SINE Alu 1 296 -17 401 154 0 0 chr13 81414473 81414538 -20458631 + AluJ/FLAM SINE Alu 9 73 -239 873 156 30 30 chr13 81414549 81414748 -20458421 - LTR56 LTR ERV1 -246 199 1 2170 112 0 42 chr13 81414785 81415098 -20458071 + AluSx SINE Alu 3 302 -10 476 280 12 36 chr13 81415181 81415349 -20457820 - MER5A DNA MER1_type -25 164 1 276 264 55 0 chr13 81415518 81415609 -20457560 + MIR SINE MIR 35 130 -132 1667 114 24 71 chr13 81415763 81416060 -20457109 + AluJo SINE Alu 17 299 -13 865 49 99 117 chr13 81416299 81416461 -20456708 - MER30 DNA MER1_type -69 161 3 2271 72 4 0 chr13 81416635 81416913 -20456256 - AluSg SINE Alu -31 279 1 21 36 0 0 chr13 81419146 81419174 -20453995 + AT_rich Low_complexity Low_complexity 1 28 0 2065 96 22 26 chr13 81419938 81420251 -20452918 + AluSx SINE Alu 1 312 0 1686 189 16 3 chr13 81421062 81421543 -20451626 + AluJo SINE Alu 1 312 0 2419 90 0 0 chr13 81422444 81422754 -20450415 + AluSg SINE Alu 1 310 0 1867 142 17 17 chr13 81423562 81423857 -20449312 - AluSx SINE Alu -1 311 17 3471 110 47 16 chr13 81424341 81424851 -20448318 - MER1A DNA MER1_type -3 526 1 237 154 0 77 chr13 81425802 81425854 -20447315 - L1MC4 LINE L1 -1339 6703 6656 675 211 92 146 chr13 81425855 81426342 -20446827 - MER4C LTR ERV1 -4 461 1 2032 130 3 0 chr13 81426438 81426743 -20446426 + AluSq SINE Alu 1 306 0 1999 138 0 38 chr13 81427108 81427428 -20445741 + AluSx SINE Alu 1 308 -4 2106 111 14 14 chr13 81427802 81428099 -20445070 + THE1B LTR MaLR 2 298 -66 890 121 106 0 chr13 81428100 81428241 -20444928 - AluSg/x SINE Alu 0 312 157 355 280 64 45 chr13 81428477 81428634 -20444535 + L2 LINE L2 3152 3311 -2 243 0 0 0 chr13 81428856 81428883 -20444286 + (CA)n Simple_repeat Simple_repeat 2 28 0 259 367 55 0 chr13 81429246 81429374 -20443795 + L2 LINE L2 3137 3271 -1 2399 90 0 0 chr13 81429489 81429789 -20443380 + AluSx SINE Alu 1 300 -12 21 89 0 0 chr13 81429989 81430045 -20443124 + AT_rich Low_complexity Low_complexity 1 56 0 2175 135 0 0 chr13 81430148 81430460 -20442709 + AluJb SINE Alu 1 312 0 2138 131 7 0 chr13 81431533 81431830 -20441339 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr13 81433027 81433050 -20440119 + AT_rich Low_complexity Low_complexity 1 23 0 189 316 0 0 chr13 81436662 81436719 -20436450 + MIR SINE MIR 150 206 -56 23 78 0 0 chr13 81437103 81437154 -20436015 + AT_rich Low_complexity Low_complexity 1 51 0 858 171 7 0 chr13 81437259 81437399 -20435770 + FLAM_C SINE Alu 1 141 -2 2192 108 31 0 chr13 81437717 81438005 -20435164 - AluSx SINE Alu -15 297 1 750 311 131 30 chr13 81438150 81438646 -20434523 - L3 LINE CR1 -96 1481 936 1039 256 77 0 chr13 81439245 81439569 -20433600 - L1MB7 LINE L1 -19 6165 5817 2059 114 7 19 chr13 81439746 81440053 -20433116 + AluSg1 SINE Alu 1 303 -6 211 252 0 103 chr13 81440634 81440741 -20432428 + MIR SINE MIR 93 188 -74 1715 136 73 11 chr13 81440883 81441170 -20431999 - AluJb SINE Alu -7 305 1 181 254 206 0 chr13 81441395 81441458 -20431711 - MIR3 SINE MIR -51 157 82 450 125 0 0 chr13 81442302 81442366 -20430803 + AluSc SINE Alu 104 167 -142 1997 134 7 13 chr13 81442824 81443122 -20430047 - AluSx SINE Alu -16 296 1 858 176 6 40 chr13 81443872 81444048 -20429121 + FRAM SINE Alu 1 170 -6 1772 140 10 41 chr13 81444048 81444364 -20428805 + AluSx SINE Alu 1 307 0 241 363 89 0 chr13 81444513 81444637 -20428532 - MIR SINE MIR -80 182 48 276 30 0 0 chr13 81444989 81445022 -20428147 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 503 178 0 23 chr13 81446182 81446356 -20426813 + (TA)n Simple_repeat Simple_repeat 2 171 0 2222 92 27 0 chr13 81446745 81447039 -20426130 - AluSx SINE Alu -10 302 1 22 0 0 0 chr13 81448689 81448711 -20424458 + AT_rich Low_complexity Low_complexity 1 22 0 2246 128 0 0 chr13 81449254 81449566 -20423603 + AluSq SINE Alu 1 312 -1 203 138 0 0 chr13 81450397 81450426 -20422743 + (TTC)n Simple_repeat Simple_repeat 3 31 0 2198 114 7 3 chr13 81450807 81451113 -20422056 + AluSx SINE Alu 1 307 -5 3421 208 9 28 chr13 81451210 81451559 -20421610 + L1MB3 LINE L1 5444 5798 -385 983 157 214 70 chr13 81451559 81451669 -20421500 + MER2 DNA MER2_type 3 96 -248 2268 120 0 3 chr13 81451669 81451978 -20421191 - AluSx SINE Alu -4 308 1 983 157 214 70 chr13 81451978 81452166 -20421003 + MER2 DNA MER2_type 96 344 0 3421 208 9 28 chr13 81452166 81452563 -20420606 + L1MB3 LINE L1 5798 6176 -7 2238 128 0 0 chr13 81452570 81452875 -20420294 - AluSx SINE Alu -7 305 1 21 36 0 0 chr13 81453675 81453703 -20419466 + AT_rich Low_complexity Low_complexity 1 28 0 1727 133 4 0 chr13 81453940 81454188 -20418981 + AluSx SINE Alu 41 289 -23 21 0 0 0 chr13 81454188 81454209 -20418960 + AT_rich Low_complexity Low_complexity 1 21 0 1966 160 7 3 chr13 81454875 81455175 -20417994 - AluJb SINE Alu -11 301 1 22 0 0 0 chr13 81455528 81455550 -20417619 + AT_rich Low_complexity Low_complexity 1 22 0 1609 169 64 10 chr13 81455620 81455916 -20417253 - AluSx SINE Alu 0 312 1 801 181 0 0 chr13 81458003 81458130 -20415039 + FLAM_C SINE Alu 1 127 -6 195 328 33 0 chr13 81458581 81458642 -20414527 + L2 LINE L2 3207 3269 -3 698 198 0 0 chr13 81461245 81461361 -20411808 - FLAM_A SINE Alu -17 116 1 4506 97 15 3 chr13 81461442 81462052 -20411117 + L1PB1 LINE L1 5535 6151 0 24 0 0 0 chr13 81462990 81463014 -20410155 + AT_rich Low_complexity Low_complexity 1 24 0 2619 201 50 12 chr13 81463767 81464410 -20408759 + L1 LINE L1 4041 4707 -1439 * 5117 122 53 34 chr13 81464406 81464796 -20408373 + L1PA15 LINE L1 5262 5643 -522 1453 167 57 53 chr13 81464796 81465095 -20408074 + AluJb SINE Alu 1 300 -12 5117 122 53 34 chr13 81465095 81465391 -20407778 + L1PA15 LINE L1 5643 5971 -194 2101 130 10 0 chr13 81465391 81465690 -20407479 + AluSx SINE Alu 1 302 -10 5117 122 53 34 chr13 81465690 81465888 -20407281 + L1PA15 LINE L1 5971 6164 -1 430 276 151 36 chr13 81467633 81467825 -20405344 - MIR SINE MIR -34 228 15 423 0 0 0 chr13 81468053 81468100 -20405069 + (CA)n Simple_repeat Simple_repeat 2 48 0 1328 201 39 14 chr13 81469446 81469725 -20403444 - AluJo SINE Alu -25 287 2 2028 148 23 0 chr13 81470661 81470966 -20402203 + AluSx SINE Alu 1 312 0 695 128 0 28 chr13 81470976 81471117 -20402052 + (GGAGAA)n Simple_repeat Simple_repeat 3 139 0 209 302 70 0 chr13 81471857 81471943 -20401226 - L2 LINE L2 -5 3308 3217 797 130 87 0 chr13 81474692 81474807 -20398362 - AluJb SINE Alu -54 258 134 2134 102 4 0 chr13 81476272 81476547 -20396622 + AluSx SINE Alu 1 276 -36 381 22 0 0 chr13 81476550 81476596 -20396573 + (CA)n Simple_repeat Simple_repeat 1 46 0 946 147 17 57 chr13 81476766 81476943 -20396226 + AluSq SINE Alu 101 270 -43 395 127 28 0 chr13 81476943 81477014 -20396155 + GA-rich Low_complexity Low_complexity 4 76 0 2427 68 3 10 chr13 81477250 81477561 -20395608 + AluY SINE Alu 1 309 -2 21 0 0 0 chr13 81478225 81478246 -20394923 + AT_rich Low_complexity Low_complexity 1 21 0 1770 162 0 43 chr13 81478249 81478552 -20394617 + AluJo SINE Alu 1 290 -22 360 0 0 0 chr13 81478555 81478595 -20394574 + (TA)n Simple_repeat Simple_repeat 1 40 0 651 263 27 93 chr13 81479392 81479651 -20393518 - MIR SINE MIR -7 255 14 21 36 0 0 chr13 81482420 81482448 -20390721 + AT_rich Low_complexity Low_complexity 1 28 0 2217 103 0 28 chr13 81483211 81483531 -20389638 + AluSx SINE Alu 1 311 -1 512 246 126 72 chr13 81484037 81484148 -20389021 + L1MC/D LINE L1 5481 5605 -2203 2057 129 0 13 chr13 81484148 81484458 -20388711 - AluSq SINE Alu -7 306 1 512 246 126 72 chr13 81484458 81484513 -20388656 + L1MC/D LINE L1 5605 5656 -2152 181 353 59 44 chr13 81484987 81485055 -20388114 - L2 LINE L2 -37 3235 3167 2030 95 44 7 chr13 81486366 81486683 -20386486 + AluSq SINE Alu 1 327 0 1894 104 4 21 chr13 81487354 81487633 -20385536 - AluSx SINE Alu -38 274 1 287 284 253 41 chr13 81488243 81488280 -20384889 + L2 LINE L2 2554 2582 -731 1857 209 44 22 chr13 81488280 81488735 -20384434 + MLT1C LTR MaLR 3 467 0 287 284 253 41 chr13 81488735 81489089 -20384080 + L2 LINE L2 2582 3020 -293 242 255 223 0 chr13 81489136 81489230 -20383939 + L2 LINE L2 3193 3307 -6 2229 109 0 10 chr13 81489315 81489619 -20383550 - AluSx SINE Alu -11 301 1 1234 135 16 0 chr13 81490853 81491046 -20382123 + AluJb SINE Alu 116 311 -1 1813 149 55 0 chr13 81491761 81492050 -20381119 + AluSx SINE Alu 1 305 -7 1655 160 56 4 chr13 81492115 81492384 -20380785 + AluJb SINE Alu 6 288 -24 192 125 0 0 chr13 81492384 81492416 -20380753 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 581 252 278 19 chr13 81492436 81492753 -20380416 - L2 LINE L2 0 3313 2915 1262 172 129 30 chr13 81493179 81493511 -20379658 + MLT1A1 LTR MaLR 1 365 0 627 199 43 0 chr13 81494371 81494512 -20378657 - L1MB3 LINE L1 0 6183 6037 1256 250 50 34 chr13 81494674 81494766 -20378403 + MLT1B LTR MaLR 1 90 -300 2045 110 20 0 chr13 81494766 81495067 -20378102 - AluSx SINE Alu -5 307 1 1256 250 50 34 chr13 81495067 81495358 -20377811 + MLT1B LTR MaLR 90 390 0 293 220 0 17 chr13 81495630 81495689 -20377480 + AluJ/FLAM SINE Alu 2 59 -243 221 159 48 32 chr13 81497203 81497266 -20375903 - L2 LINE L2 -47 3266 3203 1836 150 7 3 chr13 81497810 81498116 -20375053 + AluSx SINE Alu 1 307 -5 480 235 138 34 chr13 81498516 81498784 -20374385 + LTR33A LTR ERVL 228 523 0 1940 189 127 18 chr13 81498817 81499257 -20373912 + LTR45B LTR ERV1 2 489 0 239 383 67 8 chr13 81500475 81500595 -20372574 - L2 LINE L2 -8 3264 3138 1779 148 4 0 chr13 81500794 81501096 -20372073 - AluSx SINE Alu 0 309 7 288 280 206 17 chr13 81501382 81501557 -20371612 + MLT1J LTR MaLR 1 208 -303 397 141 188 24 chr13 81501594 81501679 -20371490 + MSTC LTR MaLR 21 119 -309 332 140 35 0 chr13 81501676 81501733 -20371436 + Alu SINE Alu 242 300 -2 * 702 113 0 0 chr13 81501735 81501841 -20371328 + (GGAA)n Simple_repeat Simple_repeat 4 109 0 7346 51 9 0 chr13 81503037 81504200 -20368969 + L1PA8 LINE L1 4995 6166 -6 31 26 0 0 chr13 81504200 81504238 -20368931 + AT_rich Low_complexity Low_complexity 1 38 0 420 247 218 49 chr13 81504513 81504861 -20368308 + L2 LINE L2 2302 2708 -606 218 270 58 95 chr13 81505125 81505262 -20367907 + L2 LINE L2 3159 3290 -23 259 315 54 46 chr13 81505474 81505511 -20367658 + MER5A DNA MER1_type 38 73 -116 2042 101 4 0 chr13 81505511 81505813 -20367356 + AluSc SINE Alu 1 303 0 259 315 54 46 chr13 81505813 81505904 -20367265 + MER5A DNA MER1_type 73 168 -21 2138 112 3 0 chr13 81506760 81507054 -20366115 + AluSx SINE Alu 1 295 -17 1950 137 53 60 chr13 81507057 81507474 -20365695 + MLT2D LTR ERVL 1 414 0 283 258 75 11 chr13 81507497 81507590 -20365579 - MIR3 SINE MIR -22 186 88 2210 81 27 0 chr13 81507714 81508011 -20365158 - AluSx SINE Alu -7 305 1 22 0 0 0 chr13 81509661 81509683 -20363486 + AT_rich Low_complexity Low_complexity 1 22 0 310 133 17 0 chr13 81511427 81511487 -20361682 + L1PB3 LINE L1 6090 6150 -4 1856 133 6 50 chr13 81512387 81512709 -20360460 + AluSq SINE Alu 1 308 -5 1068 205 31 56 chr13 81512751 81513039 -20360130 + AluJo SINE Alu 18 298 -14 321 215 97 0 chr13 81515504 81515597 -20357572 - AluS SINE Alu -200 102 1 384 372 100 0 chr13 81515618 81515798 -20357371 + MIR SINE MIR 46 243 -19 1792 118 22 87 chr13 81515972 81516293 -20356876 - AluSx SINE Alu -12 300 1 2147 136 35 16 chr13 81516967 81517335 -20355834 + THE1C LTR MaLR 1 375 0 388 293 81 23 chr13 81517359 81517533 -20355636 + MIR SINE MIR 57 240 -22 496 185 54 0 chr13 81517828 81517920 -20355249 + 7SLRNA srpRNA srpRNA 214 310 -10 25 0 0 0 chr13 81517981 81518006 -20355163 + AT_rich Low_complexity Low_complexity 1 25 0 586 239 50 80 chr13 81518287 81518525 -20354644 + MLT1A1 LTR MaLR 1 231 -134 592 138 11 0 chr13 81519467 81519554 -20353615 + AluJ/FLAM SINE Alu 12 99 -213 2054 95 32 0 chr13 81519678 81519963 -20353206 - AluSq SINE Alu -19 294 1 22 35 0 0 chr13 81520096 81520125 -20353044 + AT_rich Low_complexity Low_complexity 1 29 0 212 315 33 136 chr13 81520771 81521101 -20352068 - L2 LINE L2 -50 3222 2927 1988 145 3 3 chr13 81521246 81521556 -20351613 - AluSx SINE Alu -2 310 1 21 36 0 0 chr13 81522356 81522384 -20350785 + AT_rich Low_complexity Low_complexity 1 28 0 1637 135 4 11 chr13 81522621 81522887 -20350282 + AluSx SINE Alu 41 304 -8 1860 160 7 3 chr13 81523556 81523856 -20349313 - AluJb SINE Alu -11 301 1 22 0 0 0 chr13 81524209 81524231 -20348938 + AT_rich Low_complexity Low_complexity 1 22 0 1504 168 67 14 chr13 81524301 81524598 -20348571 - AluSq SINE Alu 0 313 1 753 181 0 0 chr13 81526685 81526812 -20346357 + FLAM_C SINE Alu 1 127 -6 196 328 33 0 chr13 81527263 81527324 -20345845 + L2 LINE L2 3207 3269 -3 609 216 0 0 chr13 81529929 81530045 -20343124 - FLAM_A SINE Alu -17 116 1 4203 100 15 5 chr13 81530125 81530736 -20342433 + L1PB1 LINE L1 5535 6151 0 297 298 0 78 chr13 81531866 81532007 -20341162 + MER5A DNA MER1_type 33 162 -27 30 45 0 0 chr13 81532136 81532180 -20340989 + AT_rich Low_complexity Low_complexity 1 44 0 324 328 51 34 chr13 81532181 81532358 -20340811 - L1MEc LINE L1 -4656 1740 1561 1871 154 0 22 chr13 81532423 81532742 -20340427 + AluSx SINE Alu 1 312 0 522 246 126 72 chr13 81533248 81533359 -20339810 + L1MC/D LINE L1 5481 5605 -2203 1935 136 0 7 chr13 81533359 81533669 -20339500 - AluSq SINE Alu -5 308 1 522 246 126 72 chr13 81533669 81533724 -20339445 + L1MC/D LINE L1 5605 5656 -2152 180 353 59 44 chr13 81534198 81534266 -20338903 - L2 LINE L2 -37 3235 3167 182 286 48 32 chr13 81535181 81535244 -20337925 - L2 LINE L2 -4 3268 3205 1942 92 44 7 chr13 81535576 81535881 -20337288 + AluSq SINE Alu 1 315 0 1803 104 4 21 chr13 81536552 81536831 -20336338 - AluSx SINE Alu -38 274 1 1750 209 44 22 chr13 81537478 81537933 -20335236 + MLT1C LTR MaLR 3 467 0 317 291 261 11 chr13 81538007 81538287 -20334882 + L2 LINE L2 2679 3020 -293 256 255 223 0 chr13 81538334 81538428 -20334741 + L2 LINE L2 3193 3307 -6 2127 115 0 3 chr13 81538513 81538817 -20334352 - AluSx SINE Alu -9 303 1 1152 135 21 0 chr13 81540051 81540243 -20332926 + AluJb SINE Alu 116 311 -1 1718 149 55 0 chr13 81540958 81541247 -20331922 + AluSx SINE Alu 1 305 -7 1565 160 56 4 chr13 81541313 81541582 -20331587 + AluJb SINE Alu 6 288 -24 192 125 0 0 chr13 81541582 81541614 -20331555 + (GGGA)n Simple_repeat Simple_repeat 1 32 0 581 252 278 19 chr13 81541634 81541951 -20331218 - L2 LINE L2 0 3313 2915 1262 172 129 30 chr13 81542379 81542711 -20330458 + MLT1A1 LTR MaLR 1 365 0 634 199 43 0 chr13 81543571 81543712 -20329457 - L1MB3 LINE L1 0 6183 6037 1241 250 50 34 chr13 81543874 81543966 -20329203 + MLT1B LTR MaLR 1 90 -300 2143 113 20 0 chr13 81543966 81544267 -20328902 - AluSx SINE Alu -5 307 1 1241 250 50 34 chr13 81544267 81544558 -20328611 + MLT1B LTR MaLR 90 390 0 1598 124 3 115 chr13 81544830 81545169 -20328000 + AluJo SINE Alu 2 302 -10 313 295 79 32 chr13 81547089 81547404 -20325765 - L2 LINE L2 -164 3149 2820 710 311 122 6 chr13 81547447 81547807 -20325362 - L2 LINE L2 -696 2618 2217 21 0 0 0 chr13 81548131 81548152 -20325017 + AT_rich Low_complexity Low_complexity 1 21 0 2304 89 7 0 chr13 81548926 81549218 -20323951 + AluSq SINE Alu 1 294 -19 194 250 196 18 chr13 81549997 81550109 -20323060 + L2 LINE L2 2913 3044 -228 370 332 80 5 chr13 81550265 81550464 -20322705 - MIR SINE MIR -29 233 20 809 145 0 0 chr13 81550627 81550744 -20322425 - FLAM_C SINE Alu -26 117 1 559 295 54 22 chr13 81551246 81551470 -20321699 - MIR SINE MIR -20 242 12 206 277 7 136 chr13 81552190 81552285 -20320884 - MIR3 SINE MIR -38 170 101 1889 158 3 7 chr13 81552285 81552576 -20320593 + AluSx SINE Alu 1 290 -22 206 277 7 136 chr13 81552576 81552635 -20320534 - MIR3 SINE MIR -107 101 36 313 133 17 0 chr13 81554568 81554628 -20318541 + L1PB3 LINE L1 6090 6150 -4 415 305 46 72 chr13 81554648 81555104 -20318065 + L1MC5 LINE L1 7488 7931 -30 2192 94 7 3 chr13 81555977 81556263 -20316906 + AluSx SINE Alu 1 287 -25 187 56 83 0 chr13 81556284 81556320 -20316849 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 271 333 27 44 chr13 81556511 81556694 -20316475 + L2 LINE L2 3081 3260 -12 1815 45 0 5 chr13 81557546 81557766 -20315403 - L1PA8 LINE L1 -14 6158 5940 2533 34 40 0 chr13 81557776 81558074 -20315095 - AluY SINE Alu 0 311 2 1595 175 21 7 chr13 81558716 81559001 -20314168 + AluJb SINE Alu 1 289 -23 193 159 48 32 chr13 81560684 81560747 -20312422 - L2 LINE L2 -47 3266 3203 2058 127 0 3 chr13 81561291 81561599 -20311570 + AluSx SINE Alu 1 307 0 418 239 142 35 chr13 81562007 81562267 -20310902 + LTR33A LTR ERVL 236 523 0 1906 189 127 18 chr13 81562300 81562740 -20310429 + LTR45B LTR ERV1 2 489 0 202 383 67 8 chr13 81563962 81564082 -20309087 - L2 LINE L2 -8 3264 3138 1907 144 4 0 chr13 81564281 81564583 -20308586 - AluSx SINE Alu 0 309 7 280 280 206 17 chr13 81564869 81565044 -20308125 + MLT1J LTR MaLR 1 208 -303 395 141 188 24 chr13 81565081 81565166 -20308003 + MSTC LTR MaLR 21 119 -309 333 140 35 0 chr13 81565163 81565220 -20307949 + Alu SINE Alu 242 300 -2 * 1494 33 0 0 chr13 81565239 81565419 -20307750 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 7409 51 7 0 chr13 81566619 81567784 -20305385 + L1PA8 LINE L1 4995 6166 -6 31 26 0 0 chr13 81567784 81567822 -20305347 + AT_rich Low_complexity Low_complexity 1 38 0 287 251 169 58 chr13 81568139 81568434 -20304735 + L2 LINE L2 2367 2694 -620 186 280 84 37 chr13 81568758 81568865 -20304304 + L2 LINE L2 3200 3311 -2 2163 101 4 0 chr13 81569096 81569398 -20303771 + AluSc SINE Alu 1 303 0 224 299 81 0 chr13 81569402 81569489 -20303680 + MER5A DNA MER1_type 75 168 -21 2281 109 3 0 chr13 81570345 81570639 -20302530 + AluSx SINE Alu 1 295 -17 1952 137 53 60 chr13 81570642 81571059 -20302110 + MLT2D LTR ERVL 1 414 0 252 258 75 11 chr13 81571082 81571175 -20301994 - MIR3 SINE MIR -22 186 88 2248 92 3 35 chr13 81571299 81571614 -20301555 - AluSx SINE Alu -7 305 1 339 316 0 38 chr13 81571614 81571742 -20301427 + MIR SINE MIR 29 151 -111 1916 118 22 87 chr13 81571991 81572312 -20300857 - AluSx SINE Alu -12 300 1 2141 136 35 16 chr13 81572986 81573354 -20299815 + THE1C LTR MaLR 1 375 0 307 293 81 23 chr13 81573378 81573552 -20299617 + MIR SINE MIR 57 240 -22 498 185 54 0 chr13 81573847 81573939 -20299230 + 7SLRNA srpRNA srpRNA 214 310 -10 25 0 0 0 chr13 81574000 81574025 -20299144 + AT_rich Low_complexity Low_complexity 1 25 0 635 239 46 76 chr13 81574306 81574544 -20298625 + MLT1A1 LTR MaLR 1 231 -134 587 138 11 0 chr13 81575486 81575573 -20297596 + AluJ/FLAM SINE Alu 12 99 -213 2178 95 32 0 chr13 81575697 81575982 -20297187 - AluSq SINE Alu -19 294 1 22 35 0 0 chr13 81576115 81576144 -20297025 + AT_rich Low_complexity Low_complexity 1 29 0 2270 122 3 0 chr13 81577263 81577574 -20295595 - AluSx SINE Alu 0 312 1 750 162 7 35 chr13 81578854 81578996 -20294173 + AluJo SINE Alu 4 141 -171 577 171 0 9 chr13 81578998 81579103 -20294066 + U13 snRNA snRNA 1 104 0 846 177 22 39 chr13 81579111 81579292 -20293877 + AluJo SINE Alu 119 296 -16 2164 98 24 7 chr13 81580552 81580848 -20292321 + AluSx SINE Alu 1 301 -11 2237 113 3 0 chr13 81581501 81581794 -20291375 + AluSx SINE Alu 2 295 -17 458 263 96 5 chr13 81581812 81582010 -20291159 + L1MEc LINE L1 765 980 -6158 1327 275 130 51 chr13 81582497 81583258 -20289911 + L1MEc LINE L1 1331 2030 -5108 2170 120 3 0 chr13 81583258 81583558 -20289611 + AluSx SINE Alu 1 301 -11 1327 275 130 51 chr13 81583558 81583793 -20289376 + L1MEc LINE L1 2030 2245 -4893 1488 197 69 0 chr13 81583793 81584083 -20289086 + AluSx SINE Alu 1 310 -2 1327 275 130 51 chr13 81584083 81584237 -20288932 + L1MEc LINE L1 2245 2747 -4391 779 263 101 3 chr13 81584229 81584556 -20288613 + L1MEc LINE L1 3527 3885 -3072 * 313 299 75 102 chr13 81585230 81585524 -20287645 + L1MB3 LINE L1 5319 5604 -517 2217 91 23 13 chr13 81586104 81586413 -20286756 + AluSx SINE Alu 1 312 0 1757 181 26 0 chr13 81587224 81587528 -20285641 + AluJo SINE Alu 1 312 0 836 102 19 25 chr13 81587548 81587705 -20285464 + (GAAA)n Simple_repeat Simple_repeat 4 159 0 1166 196 33 59 chr13 81588186 81588456 -20284713 - AluJo SINE Alu -32 280 18 2004 130 6 50 chr13 81588498 81588820 -20284349 - AluSq SINE Alu -5 308 1 661 220 6 12 chr13 81589673 81589841 -20283328 + L1MB3 LINE L1 5822 5988 -195 1864 183 0 0 chr13 81589894 81590183 -20282986 - AluJb SINE Alu -23 289 1 32 57 0 0 chr13 81590417 81590470 -20282699 + AT_rich Low_complexity Low_complexity 1 53 0 252 280 0 76 chr13 81590622 81590740 -20282429 - MER5A DNA MER1_type -48 141 33 945 219 29 29 chr13 81591434 81591644 -20281525 + MER20 DNA MER1_type 2 211 -8 2201 107 27 0 chr13 81592151 81592450 -20280719 - AluSx SINE Alu -5 307 1 410 312 45 55 chr13 81592558 81593045 -20280124 + L1M4c LINE L1 1179 1660 -4724 1113 133 31 25 chr13 81593299 81593495 -20279674 + AluSg/x SINE Alu 109 305 -5 1746 195 9 37 chr13 81593592 81593941 -20279228 + L1MB3 LINE L1 5444 5778 -405 849 171 201 57 chr13 81593941 81594051 -20279118 + MER2 DNA MER2_type 3 96 -248 2252 119 0 7 chr13 81594051 81594361 -20278808 - AluSx SINE Alu -4 308 1 849 171 201 57 chr13 81594361 81594549 -20278620 + MER2 DNA MER2_type 96 344 0 1746 195 9 37 chr13 81594549 81594789 -20278380 + L1MB3 LINE L1 5778 6023 -160 240 35 0 0 chr13 81595840 81595869 -20277300 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 255 363 89 0 chr13 81596221 81596345 -20276824 + MIR SINE MIR 48 182 -80 226 275 17 25 chr13 81596594 81596714 -20276455 + (CACGT)n Simple_repeat Simple_repeat 3 121 0 * 384 170 35 49 chr13 81596645 81596995 -20276174 + (CACAC)n Simple_repeat Simple_repeat 1 345 0 713 183 8 0 chr13 81598364 81598490 -20274679 + FLAM_C SINE Alu 1 127 -6 196 328 33 0 chr13 81598938 81598999 -20274170 + L2 LINE L2 3207 3269 -3 1693 129 7 0 chr13 81599642 81599914 -20273255 + AluSx SINE Alu 28 301 -11 21 89 0 0 chr13 81600114 81600170 -20272999 + AT_rich Low_complexity Low_complexity 1 56 0 1872 140 3 10 chr13 81600273 81600587 -20272582 + AluJb SINE Alu 1 312 0 1936 120 0 7 chr13 81601657 81601985 -20271184 + AluSx SINE Alu 1 326 0 306 328 8 30 chr13 81602687 81602818 -20270351 - L1ME4a LINE L1 -15 6106 5979 2209 189 19 45 chr13 81654772 81654908 -20218261 + L1MB3 LINE L1 5541 5679 -504 2136 120 0 0 chr13 81654908 81655209 -20217960 + AluSg SINE Alu 1 301 -9 2209 189 19 45 chr13 81655209 81655542 -20217627 + L1MB3 LINE L1 5679 5998 -185 594 178 0 0 chr13 81655708 81655798 -20217371 + MLT1B LTR MaLR 1 90 -300 1933 97 0 91 chr13 81655799 81656129 -20217040 - AluSx SINE Alu -12 300 1 1447 79 49 0 chr13 81656629 81656832 -20216337 - AluSg/x SINE Alu -5 307 95 198 0 0 0 chr13 81657359 81657381 -20215788 + (T)n Simple_repeat Simple_repeat 1 22 0 1721 138 0 4 chr13 81657519 81657780 -20215389 - AluSx SINE Alu -12 300 41 237 268 24 61 chr13 81658534 81658616 -20214553 - MIR3 SINE MIR -52 156 78 1852 140 0 31 chr13 81659069 81659390 -20213779 - AluJb SINE Alu -1 311 1 398 277 20 0 chr13 81659484 81659585 -20213584 - MER94 DNA DNA -13 121 19 215 213 188 29 chr13 81660152 81660302 -20212867 + L2 LINE L2 2925 3105 -208 2133 108 10 0 chr13 81660308 81660604 -20212565 - AluSq SINE Alu -14 299 1 1997 120 0 0 chr13 81660850 81661166 -20212003 - AluSx SINE Alu 0 316 1 598 146 0 0 chr13 81661368 81661464 -20211705 - AluJ/FRAM SINE Alu -2 310 215 1567 179 23 23 chr13 81661469 81661771 -20211398 - AluJo SINE Alu -10 302 1 488 173 0 0 chr13 81662138 81662219 -20210950 - AluSg/x SINE Alu -15 297 217 2258 94 0 0 chr13 81662810 81663108 -20210061 - AluSx SINE Alu -14 298 1 376 198 55 11 chr13 81663164 81663255 -20209914 + MER88 LTR ERVL 79 173 -291 * 1505 249 51 49 chr13 81663184 81663678 -20209491 - MER74B LTR ERVL -82 540 46 1261 131 29 15 chr13 81663773 81663979 -20209190 - THE1B LTR MaLR 0 364 156 745 57 16 49 chr13 81663979 81664101 -20209068 + AluY SINE Alu 194 311 0 1195 77 51 0 chr13 81664102 81664258 -20208911 - THE1B LTR MaLR -200 164 1 2378 84 0 0 chr13 81664987 81665296 -20207873 - AluSx SINE Alu -3 309 1 2095 89 21 3 chr13 81665561 81665852 -20207317 + AluSq SINE Alu 1 296 -17 2289 66 0 0 chr13 81666800 81667087 -20206082 - AluY SINE Alu -24 287 1 373 266 43 0 chr13 81667164 81667258 -20205911 + MER5A DNA MER1_type 14 111 -78 230 173 49 74 chr13 81667349 81667430 -20205739 - MLT1J2 LTR MaLR -340 110 32 225 94 0 0 chr13 81667528 81667560 -20205609 + (T)n Simple_repeat Simple_repeat 1 32 0 306 202 90 22 chr13 81667854 81667943 -20205226 - L1MC5 LINE L1 -50 7911 7817 203 139 0 47 chr13 81668021 81668064 -20205105 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 307 292 100 39 chr13 81668197 81668327 -20204842 - L1ME3A LINE L1 0 6170 6033 225 0 0 0 chr13 81668441 81668466 -20204703 + (TA)n Simple_repeat Simple_repeat 1 25 0 802 130 0 0 chr13 81668466 81668589 -20204580 - AluSg/x SINE Alu -21 289 167 810 240 117 71 chr13 81668673 81668897 -20204272 - MER77 LTR ERV1 -11 594 382 5633 132 17 31 chr13 81668897 81669880 -20203289 - LTR5 LTR ERVK 0 969 1 810 240 117 71 chr13 81669880 81670118 -20203051 - MER77 LTR ERV1 -223 382 141 2181 132 41 44 chr13 81670394 81670719 -20202450 - THE1B LTR MaLR 0 364 39 1988 89 30 40 chr13 81670719 81671021 -20202148 + AluSq SINE Alu 1 299 -14 2181 132 41 44 chr13 81671021 81671060 -20202109 - THE1B LTR MaLR -325 39 1 244 116 0 0 chr13 81671034 81671077 -20202092 + Alu SINE Alu 255 297 -2 * 267 93 0 0 chr13 81671068 81671107 -20202062 - THE1A LTR MaLR -321 34 1 308 320 33 16 chr13 81671249 81671371 -20201798 + MIR SINE MIR 28 151 -111 1070 221 121 75 chr13 81671375 81671853 -20201316 - MLT1D LTR MaLR 0 505 7 291 176 235 0 chr13 81671863 81671931 -20201238 + MIR SINE MIR 158 241 -21 2032 134 0 10 chr13 81672373 81672686 -20200483 - AluSx SINE Alu 0 312 3 23 0 0 0 chr13 81672717 81672740 -20200429 + AT_rich Low_complexity Low_complexity 1 23 0 1027 107 33 0 chr13 81672740 81672890 -20200279 - AluSq SINE Alu -24 289 135 2237 99 0 7 chr13 81673453 81673755 -20199414 - AluSg SINE Alu -10 300 1 1761 151 0 36 chr13 81673793 81674097 -20199072 + AluJo SINE Alu 1 293 -19 1951 137 0 0 chr13 81674694 81675016 -20198153 - AluSx SINE Alu 0 322 1 323 227 78 43 chr13 81675305 81675469 -20197700 + MIR SINE MIR 29 206 -56 1997 122 0 0 chr13 81675470 81675779 -20197390 - AluY SINE Alu 0 309 1 593 195 93 0 chr13 81675792 81675910 -20197259 - FAM SINE Alu -31 154 26 2113 116 0 0 chr13 81675940 81676233 -20196936 - AluSg SINE Alu -17 293 1 1658 163 28 3 chr13 81676235 81676523 -20196646 - AluSx SINE Alu -17 295 1 2265 99 3 0 chr13 81676553 81676865 -20196304 - AluSq SINE Alu 0 313 1 343 136 34 0 chr13 81677119 81677178 -20195991 + AluS SINE Alu 1 61 -242 22 35 0 0 chr13 81677519 81677548 -20195621 + AT_rich Low_complexity Low_complexity 1 29 0 2122 112 3 0 chr13 81677572 81677867 -20195302 + AluSx SINE Alu 1 296 -16 1975 132 3 0 chr13 81678426 81678722 -20194447 - AluSx SINE Alu -15 297 1 1592 199 0 7 chr13 81678726 81679027 -20194142 - AluJb SINE Alu -13 299 1 343 275 286 26 chr13 81679052 81679241 -20193928 - MIR SINE MIR -11 251 14 237 187 173 27 chr13 81679263 81679338 -20193831 - L2 LINE L2 -55 3258 3173 190 256 167 22 chr13 81679411 81679501 -20193668 + L2 LINE L2 3188 3290 -23 1020 152 11 6 chr13 81679502 81679680 -20193489 + AluJb SINE Alu 1 179 -133 832 117 5 206 chr13 81679971 81680028 -20193141 - MER2 DNA MER2_type -167 178 111 2219 121 11 0 chr13 81680028 81680376 -20192793 + L1PA16 LINE L1 5806 6157 -9 832 117 5 206 chr13 81680376 81680541 -20192628 - MER2 DNA MER2_type -234 111 1 447 106 0 0 chr13 81681167 81681233 -20191936 - Alu SINE Alu -7 305 240 21 36 0 0 chr13 81681486 81681514 -20191655 + AT_rich Low_complexity Low_complexity 1 28 0 1624 189 3 0 chr13 81681598 81681900 -20191269 - AluJo SINE Alu -4 308 6 206 250 0 0 chr13 81683304 81683352 -20189817 + (CA)n Simple_repeat Simple_repeat 2 49 0 2168 107 3 0 chr13 81684629 81684937 -20188232 + AluSx SINE Alu 1 309 -3 305 295 32 11 chr13 81685113 81685208 -20187961 - MER5B DNA MER1_type -19 159 63 2042 111 7 7 chr13 81685326 81685615 -20187554 - AluSq SINE Alu -24 289 1 29 0 0 0 chr13 81685924 81685953 -20187216 + AT_rich Low_complexity Low_complexity 1 29 0 1668 185 57 129 chr13 81686162 81686915 -20186254 + L1MC5 LINE L1 6705 7403 -558 1930 96 55 0 chr13 81687020 81687291 -20185878 + AluSq SINE Alu 1 286 -27 333 0 0 0 chr13 81687291 81687328 -20185841 + (CA)n Simple_repeat Simple_repeat 2 38 0 281 261 67 17 chr13 81687334 81687453 -20185716 + L1MC5 LINE L1 7784 7908 -53 1822 148 0 0 chr13 81687475 81687758 -20185411 + AluSx SINE Alu 28 310 -2 2117 108 0 7 chr13 81687842 81688139 -20185030 + AluSc SINE Alu 1 295 -14 499 141 0 0 chr13 81688578 81688649 -20184520 - AluJ/FLAM SINE Alu -240 72 2 647 229 24 98 chr13 81688864 81689161 -20184008 + L2 LINE L2 2270 2544 -770 457 279 150 18 chr13 81689173 81689399 -20183770 + L2 LINE L2 3057 3312 -1 23 0 0 0 chr13 81689481 81689504 -20183665 + AT_rich Low_complexity Low_complexity 1 23 0 722 179 143 14 chr13 81690550 81690690 -20182479 - FRAM SINE Alu -21 155 1 1900 146 0 13 chr13 81690926 81691242 -20181927 + AluJb SINE Alu 1 312 0 1395 139 14 5 chr13 81691449 81691664 -20181505 - Tigger2 DNA MER2_type 0 2718 2502 2100 127 3 0 chr13 81691776 81692076 -20181093 - AluSx SINE Alu -11 301 1 818 216 64 81 chr13 81692076 81692373 -20180796 - LTR8A LTR ERV1 -149 578 287 1022 227 40 13 chr13 81692485 81692710 -20180459 - LTR8 LTR ERV1 -460 231 1 2146 96 7 3 chr13 81693319 81693622 -20179547 + AluSp SINE Alu 2 305 -8 400 209 35 0 chr13 81693627 81693713 -20179456 - LTR19C LTR ERV1 -683 96 8 2652 108 53 0 chr13 81693817 81693829 -20179340 - MER1A DNA MER1_type -2295 407 397 1979 147 0 6 chr13 81693829 81694143 -20179026 + AluSx SINE Alu 1 312 0 2652 108 53 0 chr13 81694143 81694509 -20178660 - MER1A DNA MER1_type -2305 397 9 271 195 12 98 chr13 81694523 81694605 -20178564 - LTR50 LTR ERVL -714 81 7 1043 88 0 88 chr13 81694682 81694736 -20178433 - L1MB3 LINE L1 -2 6181 6124 589 164 164 0 chr13 81694736 81694846 -20178323 - FLAM_A SINE Alu -5 128 1 1043 88 0 88 chr13 81694846 81694983 -20178186 - L1MB3 LINE L1 -59 6124 6007 1667 183 0 3 chr13 81695041 81695359 -20177810 - AluSx SINE Alu 0 312 1 1205 300 70 19 chr13 81695434 81695714 -20177455 - ERVL LTR ERVL -351 5413 5149 1824 153 62 0 chr13 81695714 81695989 -20177180 + AluSx SINE Alu 1 292 -20 1205 300 70 19 chr13 81695989 81696212 -20176957 - ERVL LTR ERVL -615 5149 4878 1955 176 0 16 chr13 81696212 81696525 -20176644 + AluJo SINE Alu 1 308 -4 1205 300 70 19 chr13 81696525 81696557 -20176612 - ERVL LTR ERVL -886 4878 4849 320 268 14 0 chr13 81696683 81696754 -20176415 + MLT1L LTR MaLR 166 237 -378 2130 124 0 7 chr13 81696758 81697049 -20176120 + AluSx SINE Alu 1 289 -23 348 196 9 28 chr13 81697137 81697244 -20175925 + CT-rich Low_complexity Low_complexity 1 105 0 335 244 141 15 chr13 81697244 81697379 -20175790 + MLT1L LTR MaLR 308 459 -156 182 318 121 0 chr13 81697511 81697577 -20175592 - MIR SINE MIR -110 152 79 1804 178 3 20 chr13 81697961 81698259 -20174910 - AluJb SINE Alu -18 294 2 1454 88 5 51 chr13 81698288 81698504 -20174665 + AluSx SINE Alu 10 215 -97 253 323 0 20 chr13 81698648 81698736 -20174433 + (TA)n Simple_repeat Simple_repeat 1 88 -9 2033 121 0 10 chr13 81698736 81699025 -20174144 - AluJb SINE Alu -26 286 1 253 323 0 20 chr13 81699025 81699035 -20174134 + (TA)n Simple_repeat Simple_repeat 88 97 0 324 194 48 0 chr13 81699038 81699100 -20174069 - MIR SINE MIR -75 187 123 186 309 143 24 chr13 81699072 81699198 -20173971 - MIR3 SINE MIR -57 151 11 * 2315 98 3 3 chr13 81699501 81699807 -20173362 - AluSc SINE Alu -2 307 2 767 108 85 8 chr13 81700514 81700643 -20172526 - MER85 DNA T2_type 0 139 1 2468 79 0 0 chr13 81700816 81701107 -20172062 - AluSg SINE Alu -19 291 1 881 208 19 0 chr13 81701110 81701269 -20171900 - FRAM SINE Alu -18 158 1 1844 167 10 7 chr13 81702186 81702492 -20170677 + AluSx SINE Alu 1 307 -5 340 320 25 8 chr13 81702770 81702892 -20170277 + MIR SINE MIR 37 160 -102 1732 154 93 0 chr13 81702895 81703175 -20169994 + AluJb SINE Alu 1 306 -6 684 0 0 0 chr13 81703178 81703254 -20169915 + (GAAA)n Simple_repeat Simple_repeat 1 76 0 253 233 0 19 chr13 81703301 81703404 -20169765 + (CTA)n Simple_repeat Simple_repeat 1 101 0 1514 196 6 48 chr13 81703748 81703886 -20169283 + AluJo SINE Alu 3 145 -167 1789 154 44 10 chr13 81703886 81704184 -20168985 + AluSx SINE Alu 1 308 -4 1514 196 6 48 chr13 81704184 81704361 -20168808 + AluJo SINE Alu 145 305 -7 235 270 153 18 chr13 81705468 81705579 -20167590 + L2 LINE L2 3188 3313 0 1930 147 0 69 chr13 81705873 81706207 -20166962 - AluJo SINE Alu -1 311 1 203 269 29 58 chr13 81706362 81706466 -20166703 + CT-rich Low_complexity Low_complexity 4 104 0 1861 218 53 5 chr13 81706932 81707349 -20165820 + Tigger7 DNA MER2_type 1 437 -296 198 0 0 0 chr13 81710497 81710519 -20162650 + (CA)n Simple_repeat Simple_repeat 1 22 0 1140 210 62 0 chr13 81710520 81710811 -20162358 + L1MC4 LINE L1 6704 7012 -1030 817 118 41 83 chr13 81710911 81711080 -20162089 - AluJo SINE Alu -134 178 17 337 304 95 0 chr13 81711203 81711351 -20161818 - MIR SINE MIR -99 163 2 549 280 12 36 chr13 81711494 81711662 -20161507 + MER5A DNA MER1_type 1 164 -25 2195 112 0 42 chr13 81711746 81712059 -20161110 - AluSx SINE Alu -10 302 3 819 161 30 30 chr13 81712096 81712295 -20160874 + LTR56 LTR ERV1 1 199 -246 477 134 0 0 chr13 81712306 81712373 -20160796 - AluJ/FLAM SINE Alu -239 73 7 2240 104 19 3 chr13 81712772 81713079 -20160090 - AluSq SINE Alu -1 312 1 27 49 0 0 chr13 81713700 81713741 -20159428 + AT_rich Low_complexity Low_complexity 1 41 0 808 184 0 0 chr13 81713741 81713866 -20159303 - FLAM_C SINE Alu -18 125 1 447 35 0 0 chr13 81713875 81713932 -20159237 + (TG)n Simple_repeat Simple_repeat 2 58 0 924 77 250 87 chr13 81714121 81714317 -20158852 - MER30 DNA MER1_type 0 230 3 2228 72 7 0 chr13 81714491 81714768 -20158401 - AluSg SINE Alu -31 279 1 23 101 0 0 chr13 81715630 81715709 -20157460 + GC_rich Low_complexity Low_complexity 1 79 0 27 0 0 0 chr13 81715946 81715973 -20157196 + GC_rich Low_complexity Low_complexity 1 27 0 225 0 0 0 chr13 81716971 81716996 -20156173 + (TG)n Simple_repeat Simple_repeat 1 25 0 800 148 22 15 chr13 81717009 81717144 -20156025 - AluJ SINE Alu -66 246 111 761 132 0 0 chr13 81717294 81717400 -20155769 - AluJ SINE Alu -205 107 2 227 299 92 0 chr13 81717441 81717528 -20155641 - MIR SINE MIR -113 149 55 871 166 0 75 chr13 81717883 81718047 -20155122 + AluJo SINE Alu 86 236 -76 2268 108 3 3 chr13 81718047 81718344 -20154825 + AluSq SINE Alu 1 297 -16 871 166 0 75 chr13 81718344 81718366 -20154803 + AluJo SINE Alu 236 258 -54 767 167 0 0 chr13 81718368 81718488 -20154681 + AluJo SINE Alu 18 137 -175 1655 171 21 3 chr13 81718490 81718776 -20154393 + AluJo SINE Alu 5 295 -17 639 211 0 8 chr13 81718875 81718998 -20154171 - FLAM_A SINE Alu -7 126 5 228 213 0 0 chr13 81719531 81719578 -20153591 + MIR SINE MIR 99 145 -117 2234 114 3 0 chr13 81719581 81719887 -20153282 + AluSx SINE Alu 1 307 -5 1016 162 0 39 chr13 81719887 81720066 -20153103 + AluSg/x SINE Alu 132 303 -7 1762 184 0 19 chr13 81720074 81720197 -20152972 + AluJo SINE Alu 1 125 -187 226 50 50 0 chr13 81720197 81720237 -20152932 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1762 184 0 19 chr13 81720237 81720429 -20152740 + AluJo SINE Alu 125 310 -2 211 262 82 0 chr13 81720538 81720599 -20152570 - L2 LINE L2 -3 3310 3245 1085 127 46 12 chr13 81720625 81720828 -20152341 - AluJ SINE Alu 0 312 113 7309 19 5 6 chr13 81720929 81721792 -20151377 + L1PA4 LINE L1 5294 6155 0 771 133 26 0 chr13 81721834 81721947 -20151222 - AluJ SINE Alu -195 117 2 341 277 60 66 chr13 81722014 81722180 -20150989 + MER91A DNA MER1_type 8 172 -24 343 193 12 60 chr13 81722389 81722472 -20150697 + MIR3 SINE MIR 81 159 -49 1132 160 46 0 chr13 81722562 81722756 -20150413 + MER61D LTR ERV1 217 419 -82 300 44 22 22 chr13 81722803 81722848 -20150321 + MER4A LTR ERV1 54 98 -566 288 132 19 19 chr13 81722848 81722901 -20150268 + MER4A LTR ERV1 261 313 -351 2079 108 24 17 chr13 81722939 81723147 -20150022 + AluSq SINE Alu 1 213 -100 2022 93 268 6 chr13 81723147 81723502 -20149667 - LTR7 LTR ERV1 -2 448 1 2079 108 24 17 chr13 81723502 81723589 -20149580 + AluSq SINE Alu 213 298 -15 1792 169 26 13 chr13 81723602 81723910 -20149259 + AluJb SINE Alu 1 312 0 5875 126 17 30 chr13 81723913 81724760 -20148409 + HSMAR2 DNA Mariner 312 1146 -156 2388 98 3 0 chr13 81724760 81725056 -20148113 - AluSp SINE Alu -16 297 1 5875 126 17 30 chr13 81725056 81725200 -20147969 + HSMAR2 DNA Mariner 1146 1290 -12 491 32 0 0 chr13 81725211 81725274 -20147895 - HY3 scRNA scRNA -2 99 37 795 95 29 7 chr13 81725294 81725431 -20147738 + LTR16C LTR ERVL 352 491 0 740 187 45 15 chr13 81725513 81725711 -20147458 + MER33 DNA MER1_type 5 208 -116 652 290 181 3 chr13 81725723 81726044 -20147125 - L2 LINE L2 -1187 2127 1750 1839 166 96 12 chr13 81726127 81726471 -20146698 + THE1C LTR MaLR 1 373 -2 1283 220 103 39 chr13 81726478 81726914 -20146255 + LTR16C LTR ERVL 1 464 -27 397 248 29 9 chr13 81727212 81727317 -20145852 + MER45 DNA AcHobo 1 107 -1474 371 92 64 46 chr13 81727321 81727430 -20145739 + CT-rich Low_complexity Low_complexity 2 112 0 791 244 15 30 chr13 81727435 81727632 -20145537 - AluJo SINE Alu 0 312 119 2196 137 0 0 chr13 81727648 81727948 -20145221 - AluSx SINE Alu -12 300 1 295 192 0 0 chr13 81727950 81728002 -20145167 + MER45 DNA AcHobo 1530 1581 0 2279 93 7 0 chr13 81728872 81729163 -20144006 + AluSp SINE Alu 1 293 -20 1922 108 12 0 chr13 81729177 81729436 -20143733 + AluSg1 SINE Alu 1 262 -47 281 250 69 56 chr13 81729436 81729580 -20143589 - L1ME4a LINE L1 -13 6108 5963 2539 75 3 0 chr13 81729625 81729933 -20143236 + AluY SINE Alu 1 309 -2 1285 403 42 3 chr13 81730127 81730415 -20142754 + AluSx SINE Alu 1 299 -13 642 83 10 0 chr13 81730415 81730511 -20142658 - L1MB4 LINE L1 -34 6146 6050 1472 173 0 0 chr13 81730569 81730789 -20142380 + AluJo SINE Alu 1 220 -92 227 208 0 0 chr13 81730789 81730837 -20142332 + AluJo SINE Alu 252 299 -3 2226 113 20 0 chr13 81730892 81731184 -20141985 - AluSx SINE Alu -14 298 1 1982 142 7 13 chr13 81731184 81731485 -20141684 - AluSq SINE Alu -9 304 5 249 295 40 95 chr13 81731618 81731818 -20141351 + LTR67 LTR ERVL 2 190 -367 28 0 0 0 chr13 81731821 81731849 -20141320 + AT_rich Low_complexity Low_complexity 1 28 0 639 129 0 0 chr13 81731849 81731942 -20141227 - HY4 scRNA scRNA 0 93 1 608 294 57 60 chr13 81731942 81732235 -20140934 + LTR67 LTR ERVL 178 470 -87 222 37 0 0 chr13 81732235 81732262 -20140907 + (TA)n Simple_repeat Simple_repeat 1 27 0 2147 125 0 0 chr13 81732262 81732550 -20140619 - AluSx SINE Alu -19 293 6 608 294 57 60 chr13 81732550 81732623 -20140546 + LTR67 LTR ERVL 468 544 -13 2177 129 0 0 chr13 81733039 81733342 -20139827 + AluSx SINE Alu 1 303 -9 1950 154 3 3 chr13 81733699 81733997 -20139172 + AluJo SINE Alu 1 298 -14 709 207 0 0 chr13 81734000 81734116 -20139053 + AluJb SINE Alu 2 117 -195 21 0 0 0 chr13 81734126 81734147 -20139022 + AT_rich Low_complexity Low_complexity 1 21 0 2358 92 3 0 chr13 81734178 81734473 -20138696 - AluSq SINE Alu -17 296 1 192 77 0 0 chr13 81734481 81734507 -20138662 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 339 342 47 34 chr13 81735278 81735512 -20137657 - MIR SINE MIR -6 256 20 1879 142 3 52 chr13 81735676 81736000 -20137169 - AluSx SINE Alu 0 312 5 380 299 75 33 chr13 81736387 81736519 -20136650 + MIR SINE MIR 39 164 -98 249 33 0 0 chr13 81736519 81736549 -20136620 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1984 121 7 7 chr13 81736552 81736833 -20136336 - AluSg SINE Alu -29 281 1 380 299 75 33 chr13 81736833 81736910 -20136259 + MIR SINE MIR 165 261 -1 2376 100 0 7 chr13 81737007 81737316 -20135853 - AluSx SINE Alu -5 307 1 853 193 135 5 chr13 81737426 81737618 -20135551 + MER20 DNA MER1_type 3 219 0 909 124 0 8 chr13 81737885 81738014 -20135155 + FLAM_C SINE Alu 1 128 -5 28 29 0 0 chr13 81738014 81738049 -20135120 + AT_rich Low_complexity Low_complexity 1 35 0 2086 128 7 3 chr13 81738560 81738865 -20134304 - AluSx SINE Alu -6 306 1 1901 132 3 42 chr13 81738997 81739213 -20133956 - AluSx SINE Alu 0 312 150 2339 105 7 0 chr13 81739213 81739519 -20133650 - AluSx SINE Alu -4 308 1 1901 132 3 42 chr13 81739519 81739664 -20133505 - AluSx SINE Alu -162 150 1 240 351 37 52 chr13 81739878 81740012 -20133157 + MIR SINE MIR 22 153 -109 2229 132 0 0 chr13 81740202 81740506 -20132663 + AluSx SINE Alu 1 304 -8 1837 92 0 4 chr13 81740634 81740863 -20132306 + AluSg SINE Alu 6 233 -77 252 0 0 0 chr13 81740890 81740918 -20132251 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 776 175 8 0 chr13 81740921 81741041 -20132128 - FLAM_C SINE Alu -21 122 2 1347 128 0 57 chr13 81741342 81741553 -20131616 - AluSx SINE Alu -113 199 1 746 191 8 15 chr13 81741864 81741995 -20131174 - FLAM_C SINE Alu -3 130 1 758 103 19 0 chr13 81742013 81742120 -20131049 - Alu SINE Alu -16 294 186 1505 178 93 0 chr13 81742142 81742412 -20130757 - AluJb SINE Alu -17 295 1 508 245 92 37 chr13 81742443 81742513 -20130656 - MER5A DNA MER1_type 0 189 124 2310 106 3 0 chr13 81742513 81742805 -20130364 + AluSx SINE Alu 6 298 -14 508 245 92 37 chr13 81742805 81742897 -20130272 - MER5A DNA MER1_type -65 124 18 2508 74 7 0 chr13 81743617 81743915 -20129254 - AluSx SINE Alu -8 304 5 271 136 0 85 chr13 81744788 81744847 -20128322 - AluJo SINE Alu -166 136 83 2497 93 0 0 chr13 81745179 81745490 -20127679 + AluY SINE Alu 1 311 0 1853 134 46 11 chr13 81745504 81745788 -20127381 + AluSx SINE Alu 1 294 -18 7616 27 5 1 chr13 81745788 81746847 -20126322 + L1PA3 LINE L1 5072 6136 -19 348 40 0 20 chr13 81746847 81746897 -20126272 + (TAAAA)n Simple_repeat Simple_repeat 1 55 0 7616 27 5 1 chr13 81746897 81746916 -20126253 + L1PA3 LINE L1 6136 6153 -2 232 261 31 15 chr13 81747092 81747157 -20126012 - MLT1H1 LTR MaLR -188 367 302 1135 132 0 0 chr13 81747435 81747594 -20125575 + AluSg/x SINE Alu 141 299 -13 527 297 81 16 chr13 81747595 81748026 -20125143 + L1M4 LINE L1 4198 4656 -1490 1596 155 28 14 chr13 81748026 81748316 -20124853 + AluJb SINE Alu 1 294 -18 247 200 0 0 chr13 81748382 81748442 -20124727 - MER69 DNA AcHobo -79 2447 2388 321 186 17 17 chr13 81748603 81748662 -20124507 - MER69 DNA AcHobo -1167 59 1 427 185 179 26 chr13 81749053 81749204 -20123965 - L1MC4 LINE L1 -1 8041 7868 1976 115 0 28 chr13 81749205 81749522 -20123647 + AluSx SINE Alu 3 311 0 355 245 56 16 chr13 81749667 81749794 -20123375 + L1P LINE L1 4882 5019 -1127 631 234 70 13 chr13 81749802 81749960 -20123209 - MER46C DNA MER2_type -4 334 168 336 277 54 0 chr13 81750029 81750141 -20123028 + LTR33 LTR ERVL 1 118 -403 255 316 105 46 chr13 81750183 81750335 -20122834 + LTR33 LTR ERVL 245 405 -116 964 177 34 17 chr13 81750374 81750549 -20122620 + MER20 DNA MER1_type 42 219 0 1818 138 3 29 chr13 81750554 81750865 -20122304 + AluJb SINE Alu 1 303 -9 1603 190 3 10 chr13 81750870 81751180 -20121989 + AluJo SINE Alu 1 308 -4 1554 142 0 47 chr13 81751323 81751598 -20121571 + AluJo SINE Alu 25 286 -26 205 274 0 0 chr13 81751607 81751700 -20121469 + A-rich Low_complexity Low_complexity 1 93 0 221 182 286 13 chr13 81752182 81752259 -20120910 - MIR SINE MIR -11 251 154 1266 163 5 0 chr13 81752373 81752582 -20120587 - AluJb SINE Alu -17 295 86 457 145 0 0 chr13 81753089 81753190 -20119979 - AluY SINE Alu 0 314 214 207 162 0 0 chr13 81753193 81753230 -20119939 + T-rich Low_complexity Low_complexity 5 41 0 348 24 0 0 chr13 81753448 81753489 -20119680 + (TG)n Simple_repeat Simple_repeat 2 42 0 763 185 0 15 chr13 81753547 81753682 -20119487 - FLAM_C SINE Alu 0 133 1 180 0 0 0 chr13 81754242 81754262 -20118907 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1957 122 11 67 chr13 81754273 81754634 -20118535 - L1MB3 LINE L1 -7 6176 5836 4050 172 51 9 chr13 81754647 81755427 -20117742 - L1MB1 LINE L1 0 6168 5356 185 321 163 18 chr13 81755885 81756162 -20117007 + L2 LINE L2 190 506 -2808 1002 143 0 0 chr13 81756169 81756323 -20116846 - AluJ SINE Alu -10 302 149 254 87 0 243 chr13 81756326 81756429 -20116740 - MLT1C LTR MaLR -231 236 159 372 198 12 0 chr13 81756506 81756587 -20116582 - AluJ SINE Alu -151 151 70 3967 109 17 56 chr13 81756990 81757650 -20115519 - MER41B LTR ERV1 -1 634 1 755 196 0 14 chr13 81757678 81757816 -20115353 - FLAM_C SINE Alu -6 137 2 3024 144 166 21 chr13 81757849 81758300 -20114869 - LTR48 LTR ERV1 -30 757 178 2062 113 3 0 chr13 81758300 81758600 -20114569 - AluSq SINE Alu -3 310 10 3024 144 166 21 chr13 81758600 81758809 -20114360 - LTR48 LTR ERV1 -609 178 1 435 288 68 59 chr13 81758809 81758893 -20114276 - L2 LINE L2 -578 2736 2654 993 201 4 48 chr13 81758893 81759059 -20114110 - MER20 DNA MER1_type 0 219 64 1598 170 3 52 chr13 81759059 81759383 -20113786 + AluJo SINE Alu 1 308 -4 993 201 4 48 chr13 81759383 81759445 -20113724 - MER20 DNA MER1_type -155 64 1 435 288 68 59 chr13 81759445 81759596 -20113573 - L2 LINE L2 -660 2654 2499 1067 210 76 48 chr13 81760894 81760937 -20112232 + L1MC4a LINE L1 7082 7122 -686 1350 161 189 4 chr13 81760937 81761186 -20111983 + AluJb SINE Alu 1 295 -7 1067 210 76 48 chr13 81761186 81761456 -20111713 + L1MC4a LINE L1 7122 7404 -404 2004 108 10 10 chr13 81761460 81761757 -20111412 - AluY SINE Alu -14 297 1 959 249 211 11 chr13 81761761 81762130 -20111039 - LTR1B LTR ERV1 -328 498 56 1391 119 9 31 chr13 81762168 81762394 -20110775 + MER50 LTR ERV1 485 705 -29 387 110 82 68 chr13 81762398 81762448 -20110721 - AluJ/FLAM SINE Alu -228 74 21 4249 130 18 50 chr13 81762448 81763162 -20110007 - LTR8 LTR ERV1 0 691 1 387 110 82 68 chr13 81763162 81763184 -20109985 - AluJ/FLAM SINE Alu -281 21 1 339 161 0 149 chr13 81763184 81763271 -20109898 + LTR8A LTR ERV1 654 727 0 669 247 147 77 chr13 81763634 81764077 -20109092 + MER34C LTR ERV1 1 490 -95 1143 204 126 11 chr13 81764077 81764347 -20108822 - AluJo SINE Alu 0 302 2 669 247 147 77 chr13 81764347 81764446 -20108723 + MER34C LTR ERV1 490 581 -4 1685 166 0 38 chr13 81764615 81764935 -20108234 - AluJo SINE Alu -4 308 1 2431 189 52 33 chr13 81765162 81765706 -20107463 - MER41C LTR ERV1 0 554 1 422 192 13 0 chr13 81765864 81765942 -20107227 + LTR8A LTR ERV1 3 81 -646 2187 115 0 6 chr13 81765942 81766256 -20106913 - AluSp SINE Alu -1 312 1 353 303 61 0 chr13 81766264 81766363 -20106806 + MIR SINE MIR 128 232 -30 228 202 181 0 chr13 81766670 81766764 -20106405 - L2 LINE L2 -778 2536 2426 507 308 240 39 chr13 81766967 81767487 -20105682 + L3 LINE CR1 945 1569 -8 232 301 72 12 chr13 81767564 81767647 -20105522 - L2 LINE L2 -40 3232 3145 549 218 42 21 chr13 81767841 81767983 -20105186 + LTR19C LTR ERV1 635 779 0 * 1603 158 10 216 chr13 81767983 81768095 -20105074 + LTR8 LTR ERV1 159 293 -398 2121 113 0 3 chr13 81768095 81768388 -20104781 + AluSc SINE Alu 3 294 -15 1603 158 10 216 chr13 81768388 81768780 -20104389 + LTR8 LTR ERV1 293 494 -197 2085 109 0 17 chr13 81768780 81769108 -20104061 + AluY SINE Alu 1 311 0 1603 158 10 216 chr13 81769108 81769273 -20103896 + LTR8 LTR ERV1 494 691 0 2053 88 49 0 chr13 81769641 81769925 -20103244 - AluSg SINE Alu -1 309 12 1557 168 10 40 chr13 81770090 81770388 -20102781 - AluJo SINE Alu -23 289 1 454 211 220 0 chr13 81770519 81770628 -20102541 - FLAM_C SINE Alu 0 133 1 33 25 0 0 chr13 81770762 81770802 -20102367 + AT_rich Low_complexity Low_complexity 1 40 0 826 136 0 0 chr13 81770802 81770927 -20102242 - FLAM_C SINE Alu -14 129 5 734 162 0 0 chr13 81771047 81771184 -20101985 + FLAM_A SINE Alu 6 142 0 308 227 136 36 chr13 81771642 81771752 -20101417 - L2 LINE L2 -14 3299 3179 1996 82 4 8 chr13 81771771 81772038 -20101131 - AluSp SINE Alu -47 266 1 2204 103 0 3 chr13 81772214 81772514 -20100655 - AluSq SINE Alu -14 299 1 2237 103 3 0 chr13 81772530 81772842 -20100327 - AluSp SINE Alu 0 313 1 262 135 0 0 chr13 81772882 81772919 -20100250 - LTR8 LTR ERV1 0 691 655 1837 229 119 54 chr13 81772919 81773600 -20099569 - MER50 LTR ERV1 0 734 10 307 75 0 0 chr13 81773607 81773647 -20099522 - LTR8 LTR ERV1 -34 657 618 1337 134 0 0 chr13 81773647 81773849 -20099320 - AluSq SINE Alu -108 205 4 243 213 64 0 chr13 81773853 81773900 -20099269 - MIR SINE MIR -193 69 20 2092 108 20 0 chr13 81773901 81774198 -20098971 + AluSg SINE Alu 1 303 -7 1678 179 3 16 chr13 81774243 81774551 -20098618 - AluJo SINE Alu -8 304 1 201 211 0 0 chr13 81774562 81774619 -20098550 + T-rich Low_complexity Low_complexity 1 57 0 1714 157 20 29 chr13 81774873 81774960 -20098209 - LTR26B LTR ERV1 -16 593 507 1806 154 136 18 chr13 81774960 81775343 -20097826 - MSTA LTR MaLR 0 428 1 1714 157 20 29 chr13 81775343 81775573 -20097596 - LTR26B LTR ERV1 -102 507 267 2032 143 0 0 chr13 81775573 81775873 -20097296 + AluSx SINE Alu 1 300 -12 1714 157 20 29 chr13 81775873 81775906 -20097263 - LTR26B LTR ERV1 -342 267 235 499 127 0 0 chr13 81775933 81776004 -20097165 - FLAM_A SINE Alu -32 110 40 1109 166 49 15 chr13 81776006 81776211 -20096958 - LTR26E LTR ERV1 -410 212 1 623 247 43 25 chr13 81776326 81776488 -20096681 - LTR35 LTR ERV1 0 618 454 2019 79 17 20 chr13 81776492 81776645 -20096524 - AluSq SINE Alu -22 291 138 2281 84 3 0 chr13 81776645 81776944 -20096225 - AluSp SINE Alu -13 300 1 2019 79 17 20 chr13 81776944 81777082 -20096087 - AluSq SINE Alu -175 138 1 729 190 0 29 chr13 81777260 81777397 -20095772 - FLAM_C SINE Alu 0 133 1 1168 144 0 0 chr13 81777569 81777750 -20095419 - AluSg/x SINE Alu -3 309 129 2123 128 0 0 chr13 81777777 81778089 -20095080 - AluSx SINE Alu 0 312 1 204 259 267 17 chr13 81778479 81778595 -20094574 + MIR SINE MIR 46 190 -72 252 0 0 0 chr13 81778853 81778881 -20094288 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 310 88 0 13 chr13 81778881 81779096 -20094073 + AluSc SINE Alu 3 292 -7 1066 110 0 7 chr13 81779184 81779339 -20093830 + AluSg SINE Alu 35 188 -122 573 92 0 0 chr13 81779339 81779415 -20093754 - AluY SINE Alu -37 274 199 1867 117 27 30 chr13 81779561 81779859 -20093310 - AluSx SINE Alu -14 298 2 1742 140 0 52 chr13 81779867 81780175 -20092994 - AluJb SINE Alu -20 292 1 25 31 0 0 chr13 81780475 81780507 -20092662 + AT_rich Low_complexity Low_complexity 1 32 0 1949 124 10 0 chr13 81781093 81781384 -20091785 + AluJb SINE Alu 3 296 -16 1435 195 18 48 chr13 81781407 81781741 -20091428 + L1MA10 LINE L1 6007 6330 -4 1708 145 21 14 chr13 81782499 81782819 -20090350 + AluSx SINE Alu 1 322 0 1855 115 24 0 chr13 81783388 81783675 -20089494 - AluSq SINE Alu -19 294 1 2580 127 28 24 chr13 81784107 81784532 -20088637 - MSTA LTR MaLR 0 428 2 569 111 141 20 chr13 81784699 81784798 -20088371 - FLAM_C SINE Alu -32 111 1 1908 131 0 28 chr13 81786305 81786626 -20086543 - AluSx SINE Alu 0 312 1 1196 199 77 82 chr13 81786645 81787021 -20086148 - MLT1A2 LTR MaLR 0 374 1 2049 134 0 3 chr13 81787653 81787966 -20085203 + AluSx SINE Alu 1 312 0 2016 92 57 0 chr13 81788195 81788478 -20084691 + AluSx SINE Alu 1 299 -13 874 139 109 0 chr13 81788600 81788765 -20084404 + AluSc SINE Alu 127 309 0 769 167 8 0 chr13 81789172 81789292 -20083877 + FLAM_C SINE Alu 2 122 -21 387 0 0 0 chr13 81789311 81789354 -20083815 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1724 87 0 4 chr13 81789365 81789594 -20083575 - AluSg SINE Alu -77 233 6 2137 107 3 0 chr13 81789720 81790018 -20083151 - AluSx SINE Alu -8 304 6 1378 139 6 111 chr13 81790023 81790355 -20082814 - AluJo SINE Alu -15 297 1 906 141 81 0 chr13 81790669 81790818 -20082351 + AluSx SINE Alu 1 161 -151 1777 167 3 0 chr13 81791100 81791399 -20081770 + AluJo SINE Alu 3 302 -10 1177 83 0 0 chr13 81791483 81791639 -20081530 + L1PA10 LINE L1 6013 6168 0 572 257 29 29 chr13 81791858 81792029 -20081140 - MER5A DNA MER1_type -18 171 1 3720 103 6 35 chr13 81792179 81792722 -20080447 - MER1A DNA MER1_type 0 527 1 501 121 0 0 chr13 81793905 81793988 -20079181 + (TC)n Simple_repeat Simple_repeat 2 84 0 269 276 43 74 chr13 81794181 81794344 -20078825 - L2 LINE L2 -909 2405 2248 2149 174 5 14 chr13 81794344 81794712 -20078457 - MLT1A1 LTR MaLR 0 365 1 2290 201 29 38 chr13 81795174 81795725 -20077444 - MER74A LTR ERVL -12 546 1 246 198 185 12 chr13 81795813 81795894 -20077275 + MER5A DNA MER1_type 18 112 -77 619 231 28 50 chr13 81796082 81796143 -20077026 - MER5B DNA MER1_type 0 178 117 1790 140 3 17 chr13 81796143 81796464 -20076705 + AluSx SINE Alu 1 312 0 619 231 28 50 chr13 81796464 81796584 -20076585 - MER5B DNA MER1_type -61 117 1 2064 119 0 3 chr13 81797188 81797482 -20075687 + AluSg SINE Alu 1 293 -17 410 272 58 0 chr13 81797814 81797917 -20075252 - MIR SINE MIR -115 147 39 2603 106 20 6 chr13 81798059 81798417 -20074752 - THE1B LTR MaLR 0 364 2 589 299 11 22 chr13 81798712 81798896 -20074273 - MER5A DNA MER1_type -6 183 2 366 256 128 46 chr13 81798918 81799222 -20073947 - MER115 DNA AcHobo -33 660 299 458 222 0 0 chr13 81799502 81799592 -20073577 - MER5A DNA MER1_type -84 105 16 1190 194 31 0 chr13 81799628 81799855 -20073314 - MER58B DNA MER1_type -30 311 78 1985 136 3 0 chr13 81799860 81800162 -20073007 + AluSx SINE Alu 4 306 -6 1012 175 0 0 chr13 81800165 81800319 -20072850 + AluJo/FRAM SINE Alu 137 290 -12 23 33 0 0 chr13 81800323 81800353 -20072816 + AT_rich Low_complexity Low_complexity 1 30 0 696 164 66 8 chr13 81800354 81800507 -20072662 + LTR49 LTR ERV1 476 593 -2 2147 115 0 0 chr13 81800735 81801031 -20072138 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr13 81801105 81801126 -20072043 + AT_rich Low_complexity Low_complexity 1 21 0 1550 158 4 8 chr13 81801127 81801387 -20071782 - AluJo SINE Alu -25 287 29 2123 117 0 0 chr13 81801473 81801780 -20071389 + AluSx SINE Alu 1 307 -5 2061 125 3 0 chr13 81801954 81802250 -20070919 - AluSx SINE Alu -15 297 1 523 129 11 0 chr13 81802258 81802351 -20070818 - L1PA13 LINE L1 -2 6161 6068 252 275 9 46 chr13 81802360 81802469 -20070700 - L2 LINE L2 -683 2631 2527 442 125 16 0 chr13 81802491 81802555 -20070614 + AluS SINE Alu 1 65 -248 3378 223 123 58 chr13 81802775 81802953 -20070216 - L1MC4 LINE L1 0 8042 7877 2100 136 0 0 chr13 81802953 81803255 -20069914 + AluSx SINE Alu 3 304 -8 3378 223 123 58 chr13 81803255 81804282 -20068887 - L1MC4 LINE L1 -165 7877 6742 2214 101 14 0 chr13 81804282 81804579 -20068590 - AluSx SINE Alu -11 301 1 3378 223 123 58 chr13 81804579 81804694 -20068475 - L1MC4 LINE L1 -1300 6742 6636 207 100 0 0 chr13 81804695 81804725 -20068444 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 2840 234 31 20 chr13 81804725 81805185 -20067984 + MER82 DNA MER2_type 3 473 -180 2177 106 0 7 chr13 81805185 81805488 -20067681 + AluSx SINE Alu 1 301 -11 2840 234 31 20 chr13 81805488 81805665 -20067504 + MER82 DNA MER2_type 473 647 -6 546 279 29 44 chr13 81805682 81805886 -20067283 - L1MC4 LINE L1 -1384 6658 6458 1310 177 0 25 chr13 81806061 81806304 -20066865 - AluJo SINE Alu -75 237 1 2007 116 0 7 chr13 81806658 81806952 -20066217 - AluSx SINE Alu -18 294 3 996 194 22 0 chr13 81807971 81808151 -20065018 - MER5A DNA MER1_type -5 184 1 846 216 73 0 chr13 81808490 81808694 -20064475 + MER20 DNA MER1_type 1 219 0 2239 101 23 0 chr13 81808709 81809015 -20064154 - AluSp SINE Alu 0 313 1 309 299 173 38 chr13 81809481 81809822 -20063347 - L2 LINE L2 -73 3240 2854 429 286 80 23 chr13 81809869 81810044 -20063125 - L2 LINE L2 -581 2733 2549 257 33 0 0 chr13 81810366 81810396 -20062773 + Tigger2 DNA MER2_type 1 30 -2688 872 189 41 128 chr13 81811452 81811695 -20061474 + LTR48B LTR ERV1 1 222 -422 405 0 0 0 chr13 81811716 81811761 -20061408 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 1290 213 14 14 chr13 81811762 81812162 -20061007 - AluJb SINE Alu 0 400 1 1296 189 17 34 chr13 81812316 81812604 -20060565 + LTR29 LTR ERV1 348 653 0 744 135 32 8 chr13 81813018 81813144 -20060025 + MLT1C LTR MaLR 1 129 -338 2454 133 13 30 chr13 81813144 81813199 -20059970 + MSTA LTR MaLR 1 55 -373 2122 122 0 0 chr13 81813199 81813495 -20059674 + AluSg SINE Alu 1 296 -14 2454 133 13 30 chr13 81813495 81813836 -20059333 + MSTA LTR MaLR 55 390 -38 1937 153 0 0 chr13 81813836 81814143 -20059026 + AluSx SINE Alu 1 307 -5 2160 117 0 0 chr13 81814317 81814615 -20058554 - AluSx SINE Alu -14 298 1 381 158 13 0 chr13 81814623 81814699 -20058470 - L1PA14 LINE L1 0 6161 6085 243 213 61 102 chr13 81814953 81815150 -20058019 - L1MEd LINE L1 -5927 192 4 1821 131 62 0 chr13 81815608 81815883 -20057286 + AluSx SINE Alu 1 292 -20 674 258 86 14 chr13 81816035 81816106 -20057063 - ERVL LTR ERVL -809 4955 4891 1730 181 0 19 chr13 81816106 81816420 -20056749 + AluJo SINE Alu 1 308 -4 674 258 86 14 chr13 81816420 81816569 -20056600 - ERVL LTR ERVL -873 4891 4719 806 152 15 15 chr13 81816744 81816876 -20056293 + FLAM_C SINE Alu 2 133 0 2147 93 17 0 chr13 81816904 81817195 -20055974 + AluSq SINE Alu 1 296 -17 1003 216 153 28 chr13 81817264 81817666 -20055503 + MER66A LTR ERV1 99 478 0 1576 155 34 17 chr13 81817800 81818097 -20055072 - AluJo SINE Alu -10 302 1 255 31 0 0 chr13 81818106 81818138 -20055031 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2210 115 3 0 chr13 81818307 81818619 -20054550 + AluSp SINE Alu 1 313 0 1875 153 6 16 chr13 81818648 81818962 -20054207 + AluJb SINE Alu 1 311 -1 264 277 106 0 chr13 81819129 81819223 -20053946 - MIR SINE MIR -71 191 88 2034 114 20 0 chr13 81819618 81819916 -20053253 + AluSq SINE Alu 1 304 -9 219 69 0 0 chr13 81820165 81820194 -20052975 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2260 104 0 0 chr13 81820198 81820497 -20052672 + AluSx SINE Alu 1 299 -13 784 179 8 15 chr13 81820544 81820678 -20052491 - FLAM_C SINE Alu 0 133 1 180 363 59 10 chr13 81821214 81821316 -20051853 + MIR SINE MIR 31 137 -125 426 256 68 57 chr13 81821593 81821655 -20051514 - MER5B DNA MER1_type 0 178 118 2180 90 3 0 chr13 81821655 81821943 -20051226 + AluSp SINE Alu 2 290 -23 509 0 16 0 chr13 81821943 81822004 -20051165 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 426 256 68 57 chr13 81822004 81822116 -20051053 - MER5B DNA MER1_type -59 119 1 1979 102 68 0 chr13 81822262 81822555 -20050614 + AluSq SINE Alu 1 313 0 1882 152 6 16 chr13 81822584 81822899 -20050270 + AluJb SINE Alu 1 312 0 264 277 106 0 chr13 81823066 81823160 -20050009 - MIR SINE MIR -71 191 88 2034 114 20 0 chr13 81823555 81823853 -20049316 + AluSq SINE Alu 1 304 -9 219 69 0 0 chr13 81824102 81824131 -20049038 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2223 110 0 0 chr13 81824135 81824434 -20048735 + AluSx SINE Alu 1 299 -13 803 179 8 15 chr13 81824482 81824616 -20048553 - FLAM_C SINE Alu 0 133 1 929 163 0 0 chr13 81824634 81824810 -20048359 - AluSg/x SINE Alu 0 312 137 2314 87 0 0 chr13 81824810 81825108 -20048061 - AluSc SINE Alu -11 298 1 3986 184 40 52 chr13 81825521 81826486 -20046683 + LTR13 LTR ERVK 1 954 0 1995 138 0 0 chr13 81826707 81827005 -20046164 - AluSx SINE Alu -14 298 1 1712 147 30 93 chr13 81827091 81827458 -20045711 + MER7A DNA MER2_type 2 343 -3 2246 76 10 0 chr13 81827518 81827820 -20045349 + AluSq SINE Alu 1 305 -8 762 247 0 6 chr13 81827867 81828029 -20045140 + FRAM SINE Alu 1 160 -16 1775 138 69 0 chr13 81828116 81828406 -20044763 + AluSg SINE Alu 1 310 0 1120 144 2 90 chr13 81828421 81828843 -20044326 + L1M2 LINE L1 5042 5583 -708 426 215 39 31 chr13 81829146 81829276 -20043893 + AluSg/x SINE Alu 172 302 -7 1863 163 0 10 chr13 81829279 81829586 -20043583 + AluJb SINE Alu 1 304 -8 235 300 52 136 chr13 81830363 81830584 -20042585 - L2 LINE L2 -18 3254 3061 2609 199 24 47 chr13 81830584 81830713 -20042456 - MER70B LTR ERVL 0 578 447 1492 148 15 19 chr13 81830713 81830984 -20042185 - AluSx SINE Alu -9 303 34 2609 199 24 47 chr13 81830984 81831446 -20041723 - MER70B LTR ERVL -131 447 1 235 300 52 136 chr13 81831446 81831511 -20041658 - L2 LINE L2 -211 3061 2992 2126 155 62 30 chr13 81831809 81832210 -20040959 + LTR53 LTR ERVL 1 414 -105 1659 111 0 76 chr13 81832315 81832603 -20040566 - AluSq SINE Alu -47 266 1 1107 259 59 27 chr13 81832897 81832996 -20040173 + LTR16A LTR ERVL 59 153 -297 2102 184 14 14 chr13 81832996 81833361 -20039808 - MLT1A1 LTR MaLR 0 365 1 1107 259 59 27 chr13 81833361 81833636 -20039533 + LTR16A LTR ERVL 153 445 -5 864 135 0 0 chr13 81833656 81833782 -20039387 + FLAM_C SINE Alu 1 126 -17 2210 87 0 7 chr13 81834172 81834470 -20038699 - AluSq SINE Alu -17 296 1 1811 164 0 0 chr13 81835059 81835367 -20037802 - AluJo SINE Alu 0 308 1 410 241 153 22 chr13 81835395 81835532 -20037637 + MLT1L LTR MaLR 83 237 -378 2065 121 0 7 chr13 81835536 81835842 -20037327 + AluSx SINE Alu 1 304 -8 446 258 33 40 chr13 81835856 81836007 -20037162 - L2 LINE L2 -1560 1754 1605 1860 137 20 7 chr13 81836025 81836318 -20036851 - AluSx SINE Alu -15 297 1 1006 264 62 14 chr13 81836721 81837013 -20036156 + MLT1I LTR MaLR 104 409 0 899 307 143 23 chr13 81837686 81838023 -20035146 + L2 LINE L2 544 839 -2475 2284 94 0 7 chr13 81838023 81838331 -20034838 - AluSc SINE Alu -1 308 3 899 307 143 23 chr13 81838331 81838743 -20034426 + L2 LINE L2 839 1383 -1931 300 177 0 16 chr13 81839199 81839261 -20033908 - MLT1C LTR MaLR 0 505 445 1158 186 0 14 chr13 81839261 81839481 -20033688 + AluJb SINE Alu 81 297 -15 534 262 69 65 chr13 81839487 81839762 -20033407 - MLT1C LTR MaLR -67 400 125 343 143 0 0 chr13 81839762 81839818 -20033351 - MSTA LTR MaLR 0 428 373 38 0 0 0 chr13 81839928 81839966 -20033203 + AT_rich Low_complexity Low_complexity 1 38 0 1959 114 7 0 chr13 81840026 81840326 -20032843 - AluSg SINE Alu 0 302 1 2052 113 0 3 chr13 81840351 81840642 -20032527 - AluSx SINE Alu -22 290 1 239 244 160 39 chr13 81841052 81841208 -20031961 - LTR33A LTR ERVL -46 477 303 180 0 0 0 chr13 81841872 81841892 -20031277 + (A)n Simple_repeat Simple_repeat 1 20 0 1393 166 20 34 chr13 81841896 81842191 -20030978 + AluJo SINE Alu 1 291 -21 427 136 0 0 chr13 81842236 81842295 -20030874 + AluS SINE Alu 3 61 -257 1403 225 80 37 chr13 81842411 81842847 -20030322 + MER50 LTR ERV1 280 734 0 262 135 0 0 chr13 81842847 81842884 -20030285 + LTR8 LTR ERV1 655 691 0 2254 99 3 0 chr13 81842924 81843236 -20029933 + AluSp SINE Alu 1 313 0 2204 103 0 3 chr13 81843252 81843552 -20029617 + AluSq SINE Alu 1 299 -14 1762 108 4 15 chr13 81843729 81843998 -20029171 + AluSp SINE Alu 1 266 -47 435 240 124 8 chr13 81844017 81844138 -20029031 + L2 LINE L2 3179 3313 0 3326 197 8 19 chr13 81844155 81844902 -20028267 + L1 LINE L1 4450 5188 -958 2164 101 0 3 chr13 81845005 81845302 -20027867 - AluSx SINE Alu -15 297 2 1392 187 29 45 chr13 81845553 81845891 -20027278 + MER61B LTR ERV1 1 424 -1 2221 94 3 3 chr13 81846213 81846521 -20026648 + AluSc SINE Alu 2 309 0 185 309 143 24 chr13 81846820 81846946 -20026223 + MIR3 SINE MIR 11 151 -57 * 328 194 48 0 chr13 81846918 81846980 -20026189 + MIR SINE MIR 123 187 -75 1871 122 3 10 chr13 81846993 81847281 -20025888 + AluJb SINE Alu 1 286 -26 249 345 0 0 chr13 81847282 81847369 -20025800 + (TA)n Simple_repeat Simple_repeat 1 87 0 626 116 0 0 chr13 81847513 81847599 -20025570 - AluSg/x SINE Alu -97 213 128 678 175 24 8 chr13 81848916 81849042 -20024127 - FLAM_C SINE Alu -14 129 2 1726 206 0 3 chr13 81849263 81849569 -20023600 - AluJb SINE Alu -4 308 4 387 246 22 44 chr13 81850621 81850804 -20022365 + (CA)n Simple_repeat Simple_repeat 2 180 0 324 0 0 0 chr13 81851148 81851184 -20021985 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1824 138 4 0 chr13 81851195 81851463 -20021706 - AluSx SINE Alu -39 273 5 363 216 76 130 chr13 81851576 81851676 -20021493 + MIR SINE MIR 21 125 -137 2323 112 3 0 chr13 81851676 81851979 -20021190 - AluSx SINE Alu -8 304 1 1817 158 6 28 chr13 81851985 81852168 -20021001 - AluJo SINE Alu -2 310 135 2543 56 3 0 chr13 81852168 81852470 -20020699 - AluY SINE Alu -8 303 1 1817 158 6 28 chr13 81852470 81852603 -20020566 - AluJo SINE Alu -177 135 1 363 216 76 130 chr13 81852603 81852680 -20020489 + MIR SINE MIR 130 195 -67 235 363 35 0 chr13 81852676 81852789 -20020380 - L3 LINE CR1 -768 809 693 * 261 290 92 53 chr13 81853349 81853556 -20019613 - MIR SINE MIR -20 242 28 988 219 9 18 chr13 81853930 81854158 -20019011 + AluJo SINE Alu 87 312 0 545 291 184 34 chr13 81855262 81855643 -20017526 - MLT1H LTR MaLR -14 535 98 378 167 28 0 chr13 81855655 81855727 -20017442 - AluJ/FRAM SINE Alu 0 302 229 2237 126 24 42 chr13 81855727 81856109 -20017060 - THE1C LTR MaLR 0 375 1 2250 126 0 0 chr13 81856853 81857182 -20015987 + AluSx SINE Alu 1 329 0 1232 144 0 0 chr13 81857192 81857373 -20015796 + AluSg/x SINE Alu 127 307 -3 724 190 0 29 chr13 81857545 81857682 -20015487 + FLAM_C SINE Alu 1 133 0 2305 102 0 19 chr13 81857860 81857998 -20015171 + AluSq SINE Alu 1 140 -173 2399 87 3 0 chr13 81857998 81858297 -20014872 + AluSp SINE Alu 1 300 -13 2305 102 0 19 chr13 81858297 81858472 -20014697 + AluSq SINE Alu 140 308 -5 2242 113 36 33 chr13 81858514 81858877 -20014292 - THE1B LTR MaLR 0 364 1 494 16 16 0 chr13 81858906 81858969 -20014200 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 1680 186 24 14 chr13 81858970 81859261 -20013908 - AluJb SINE Alu -18 294 1 1232 261 57 78 chr13 81859272 81860103 -20013066 + L1MEd LINE L1 466 1179 -4940 1535 224 0 10 chr13 81860103 81860411 -20012758 + AluJb SINE Alu 2 306 -6 1232 261 57 78 chr13 81860411 81860484 -20012685 + L1MEd LINE L1 1179 1252 -4867 2518 84 3 0 chr13 81860520 81860830 -20012339 + AluSp SINE Alu 1 311 -2 207 0 0 0 chr13 81860835 81860858 -20012311 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 302 312 0 36 chr13 81860874 81860967 -20012202 + HAL1 LINE L1 1502 1590 -917 2552 133 12 65 chr13 81860967 81861479 -20011690 - MER31A LTR ERV1 0 485 1 302 312 0 36 chr13 81861479 81861523 -20011646 + HAL1 LINE L1 1590 1634 -873 248 227 45 23 chr13 81861526 81861614 -20011555 - L1MC4 LINE L1 -1339 6703 6614 1634 211 0 0 chr13 81861645 81861930 -20011239 - AluJo SINE Alu -27 285 1 2406 93 3 0 chr13 81862223 81862523 -20010646 + AluSp SINE Alu 3 303 -10 10670 85 1 20 chr13 81862576 81864838 -20008331 - L1PA7 LINE L1 0 6154 3899 1951 150 38 41 chr13 81864977 81865136 -20008033 + MLT1A1 LTR MaLR 1 159 -206 1792 170 37 0 chr13 81865136 81865436 -20007733 + AluSx SINE Alu 1 311 -1 1951 150 38 41 chr13 81865436 81865642 -20007527 + MLT1A1 LTR MaLR 159 365 0 2146 106 13 13 chr13 81865771 81866073 -20007096 - AluY SINE Alu -7 304 3 2166 131 3 0 chr13 81866075 81866373 -20006796 - AluSx SINE Alu -13 299 1 397 209 35 0 chr13 81866489 81866575 -20006594 + LTR19C LTR ERV1 8 96 -683 2264 96 7 3 chr13 81866580 81866882 -20006287 - AluSp SINE Alu -9 304 2 2119 125 7 3 chr13 81867658 81867963 -20005206 + AluSx SINE Alu 1 306 -6 636 93 31 10 chr13 81868090 81868187 -20004982 + AluS SINE Alu 2 100 -213 1937 120 40 4 chr13 81868414 81868690 -20004479 + AluSx SINE Alu 1 286 -26 217 0 0 57 chr13 81868707 81868742 -20004427 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 1390 174 42 0 chr13 81869161 81869397 -20003772 + AluJo SINE Alu 1 246 -66 21 36 0 0 chr13 81869454 81869482 -20003687 + AT_rich Low_complexity Low_complexity 1 28 0 6605 113 10 43 chr13 81870642 81871652 -20001517 - THE1C-int LTR MaLR -603 977 1 1620 126 132 35 chr13 81871652 81871994 -20001175 - THE1C LTR MaLR 0 375 1 1222 149 33 66 chr13 81871994 81872114 -20001055 - AluJo SINE Alu -79 233 123 2118 124 0 10 chr13 81872114 81872413 -20000756 + AluSx SINE Alu 1 296 -16 1222 149 33 66 chr13 81872413 81872533 -20000636 - AluJo SINE Alu -189 123 1 1796 169 3 17 chr13 81873103 81873398 -19999771 + AluJo SINE Alu 7 297 -15 308 193 36 93 chr13 81873451 81873591 -19999578 + LTR37A LTR ERV1 295 426 0 1272 286 59 40 chr13 81874523 81874794 -19998375 + L1ME3A LINE L1 4804 5068 -1102 1871 155 3 19 chr13 81874794 81875111 -19998058 - AluJb SINE Alu 0 312 1 1272 286 59 40 chr13 81875111 81875971 -19997198 + L1ME3A LINE L1 5068 5951 -219 180 107 18 36 chr13 81876682 81876738 -19996431 + (CAAAA)n Simple_repeat Simple_repeat 1 55 0 1963 225 40 33 chr13 81877547 81878098 -19995071 + MER74A LTR ERVL 1 555 -3 209 189 0 0 chr13 81878174 81878211 -19994958 + (CAT)n Simple_repeat Simple_repeat 1 37 0 577 241 31 19 chr13 81878581 81878743 -19994426 - MIR SINE MIR -50 212 49 2042 146 3 0 chr13 81879312 81879614 -19993555 - AluJb SINE Alu -9 303 1 628 171 152 13 chr13 81879732 81879890 -19993279 - MER5A DNA MER1_type -6 183 4 1588 182 54 3 chr13 81879943 81880240 -19992929 + AluJo SINE Alu 1 312 0 224 292 62 0 chr13 81880373 81880469 -19992700 - L2 LINE L2 -1 3312 3211 1437 213 4 4 chr13 81880827 81881090 -19992079 - AluJb SINE Alu -49 263 1 2215 120 0 3 chr13 81881272 81881571 -19991598 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr13 81881601 81881623 -19991546 + AT_rich Low_complexity Low_complexity 1 22 0 492 139 0 0 chr13 81881631 81881703 -19991466 - FLAM SINE Alu -32 111 40 1113 166 49 15 chr13 81881704 81881909 -19991260 - LTR26E LTR ERV1 -410 212 1 243 191 0 0 chr13 81882024 81882066 -19991103 - LTR35 LTR ERV1 0 618 577 918 225 21 17 chr13 81932217 81932453 -19940716 + AluJo SINE Alu 75 311 -1 563 296 62 53 chr13 81932527 81932770 -19940399 + MIR SINE MIR 18 262 0 21 0 0 0 chr13 81933039 81933060 -19940109 + AT_rich Low_complexity Low_complexity 1 21 0 434 279 64 7 chr13 81934284 81934424 -19938745 - MIR SINE MIR -89 173 26 1840 183 3 3 chr13 81935256 81935562 -19937607 - AluJo SINE Alu -6 306 1 349 328 32 18 chr13 81937625 81937779 -19935390 + MIR SINE MIR 20 172 -62 2218 120 3 0 chr13 81938007 81938308 -19934861 + AluSx SINE Alu 1 302 -10 2165 97 20 10 chr13 81939004 81939304 -19933865 + AluSq SINE Alu 1 303 -10 280 204 4 0 chr13 81939310 81939372 -19933797 + L1ME LINE L1 5490 5543 -578 1763 132 8 0 chr13 81940997 81941248 -19931921 - AluSx SINE Alu -10 302 50 314 332 61 43 chr13 81941343 81941689 -19931480 + L2 LINE L2 1745 2096 -1218 1928 45 0 0 chr13 81942794 81943015 -19930154 + AluY SINE Alu 69 289 -22 2444 77 6 0 chr13 81943176 81943487 -19929682 - AluSp SINE Alu 0 313 1 1285 139 25 4 chr13 81943496 81943773 -19929396 - L1M4 LINE L1 -696 5482 5200 270 179 11 137 chr13 81943786 81943820 -19929349 + MLT1I LTR MaLR 307 344 -65 2051 149 3 0 chr13 81943820 81944121 -19929048 - AluSx SINE Alu -10 302 1 270 179 11 137 chr13 81944121 81944181 -19928988 + MLT1I LTR MaLR 344 389 -20 2262 270 68 55 chr13 81944267 81944915 -19928254 - HAL1 LINE L1 -1262 1245 571 1492 119 5 0 chr13 81944915 81945152 -19928017 + AluSq SINE Alu 81 318 0 2262 270 68 55 chr13 81945152 81945731 -19927438 - HAL1 LINE L1 -1936 571 1 2009 142 0 19 chr13 81945777 81946093 -19927076 + AluSx SINE Alu 1 310 -2 2205 116 36 30 chr13 81946445 81946807 -19926362 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr13 81947359 81947387 -19925782 + (TTG)n Simple_repeat Simple_repeat 2 29 0 3082 220 80 22 chr13 81948404 81949663 -19923506 - L1ME2 LINE L1 -10 6154 4824 1914 119 24 44 chr13 81949688 81949983 -19923186 + AluSg SINE Alu 1 289 -21 2135 96 27 3 chr13 81950306 81950598 -19922571 + AluY SINE Alu 3 301 -10 308 260 128 78 chr13 81953960 81954179 -19918990 + L1M2 LINE L1 836 1065 -5784 351 318 74 57 chr13 81955222 81955518 -19917651 - L3 LINE CR1 -1 1576 1276 1019 87 0 0 chr13 81955711 81955837 -19917332 + AluY SINE Alu 1 126 -185 333 200 158 11 chr13 81956551 81956646 -19916523 + MER5B DNA MER1_type 68 176 -2 28 0 0 0 chr13 81957462 81957490 -19915679 + AT_rich Low_complexity Low_complexity 1 28 0 750 191 0 0 chr13 81957876 81957991 -19915178 - FLAM_A SINE Alu -17 116 2 250 294 59 0 chr13 81958837 81958922 -19914247 + L2 LINE L2 3172 3261 -11 907 153 0 0 chr13 81959418 81959549 -19913620 + FLAM_C SINE Alu 3 133 0 281 321 29 7 chr13 81959586 81959723 -19913446 + HAL1 LINE L1 2209 2348 -159 22 56 0 0 chr13 81959803 81959839 -19913330 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 27 chr13 81960092 81960113 -19913056 + AT_rich Low_complexity Low_complexity 1 22 -14 909 158 0 8 chr13 81960113 81960246 -19912923 + FLAM_A SINE Alu 1 132 -1 26 0 0 27 chr13 81960246 81960261 -19912908 + AT_rich Low_complexity Low_complexity 22 36 0 685 253 53 0 chr13 81960461 81960631 -19912538 + MLT1B LTR MaLR 204 382 -8 2475 91 0 0 chr13 81961890 81962197 -19910972 - AluSg SINE Alu -3 307 1 216 234 104 0 chr13 81962356 81962433 -19910736 + L2 LINE L2 2368 2452 -862 546 310 53 28 chr13 81962591 81963059 -19910110 + L1ME3 LINE L1 4512 4991 -1155 1155 228 89 3 chr13 81963341 81963644 -19909525 + L1ME3 LINE L1 5470 5798 -372 406 245 93 61 chr13 81963958 81964153 -19909016 + L1ME3 LINE L1 5885 6089 -77 325 254 0 14 chr13 81964261 81964399 -19908770 + (CATA)n Simple_repeat Simple_repeat 3 138 0 563 276 105 0 chr13 81964709 81964890 -19908279 + MIR SINE MIR 42 241 -21 816 196 0 29 chr13 81965619 81965757 -19907412 + AluJo SINE Alu 2 135 -177 21 36 0 0 chr13 81966393 81966421 -19906748 + AT_rich Low_complexity Low_complexity 1 28 0 200 293 190 9 chr13 81967709 81967825 -19905344 + MIR3 SINE MIR 69 205 -3 222 108 108 0 chr13 81968870 81968907 -19904262 - L3 LINE CR1 -10 1567 1527 21 0 0 0 chr13 81969574 81969595 -19903574 + AT_rich Low_complexity Low_complexity 1 21 0 596 88 44 0 chr13 81970738 81970851 -19902318 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 394 318 117 46 chr13 81972428 81972711 -19900458 + L2 LINE L2 2906 3208 -64 1707 180 44 3 chr13 81973240 81973535 -19899634 + AluJb SINE Alu 5 311 -1 550 307 96 4 chr13 81974146 81974416 -19898753 + LTR16A LTR ERVL 154 448 -2 2067 204 41 29 chr13 81976427 81976913 -19896256 - L1MB7 LINE L1 -8 6176 5685 1629 140 8 19 chr13 81977240 81977505 -19895664 - AluSx SINE Alu -8 304 43 2935 109 31 19 chr13 81977761 81978184 -19894985 + MSTA LTR MaLR 1 428 0 235 266 174 18 chr13 81978297 81978406 -19894763 + MIR SINE MIR 20 145 -63 1011 133 0 42 chr13 81979566 81979731 -19893438 - AluSg/x SINE Alu -21 289 132 336 24 0 0 chr13 81979731 81979772 -19893397 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1964 101 29 0 chr13 81979772 81980048 -19893121 - AluSx SINE Alu -28 284 1 513 0 0 0 chr13 81980889 81980946 -19892223 + (TG)n Simple_repeat Simple_repeat 1 57 0 228 100 0 0 chr13 81980946 81980986 -19892183 + (GA)n Simple_repeat Simple_repeat 2 41 0 1659 164 17 14 chr13 81981148 81981440 -19891729 - AluJo SINE Alu -19 293 1 280 185 0 31 chr13 81981478 81981543 -19891626 - MIR SINE MIR -49 213 151 750 208 130 36 chr13 81981543 81981851 -19891318 + MSTD LTR MaLR 1 396 0 325 202 274 24 chr13 81981851 81981976 -19891193 - MIR SINE MIR -70 138 5 439 134 24 0 chr13 81982488 81982570 -19890599 + L1PA16 LINE L1 6079 6162 -4 630 257 23 11 chr13 81983415 81983590 -19889579 - AluSg/x SINE Alu -9 300 124 2523 74 0 0 chr13 81983981 81984290 -19888879 + AluY SINE Alu 1 309 -2 540 226 19 31 chr13 81984819 81984978 -19888191 + MER103 DNA DNA 3 159 -7 1829 201 21 21 chr13 81984993 81985367 -19887802 - MLT1A2 LTR MaLR 0 374 1 735 233 84 14 chr13 81985454 81985669 -19887500 + MIR SINE MIR 32 261 -1 215 214 0 0 chr13 81986355 81986397 -19886772 + GA-rich Low_complexity Low_complexity 3 44 0 2135 129 3 0 chr13 81986911 81987213 -19885956 - AluJb SINE Alu -9 303 1 2471 156 21 14 chr13 81987231 81987649 -19885520 - L1MB2 LINE L1 -1 6170 5750 2310 110 0 0 chr13 81987778 81988079 -19885090 + AluSq SINE Alu 1 301 -12 1534 134 31 5 chr13 81988342 81988566 -19884603 + MER30 DNA MER1_type 1 230 0 628 275 74 87 chr13 81988597 81989044 -19884125 - L2 LINE L2 0 3272 2832 26 30 0 0 chr13 81989506 81989539 -19883630 + AT_rich Low_complexity Low_complexity 1 33 0 192 301 137 0 chr13 81990671 81990744 -19882425 + L2 LINE L2 3189 3271 -42 12793 57 4 0 chr13 81992134 81994448 -19878721 - L1PA6 LINE L1 0 6154 3834 1080 230 48 12 chr13 81995365 81995617 -19877552 + MIR SINE MIR 2 262 0 519 130 26 0 chr13 81995811 81995888 -19877281 + AluS SINE Alu 2 80 -232 750 169 70 64 chr13 81996073 81996245 -19876924 + AluJo SINE Alu 21 193 -119 475 273 101 62 chr13 81996759 81996968 -19876201 - MIR SINE MIR -26 236 20 302 229 181 24 chr13 81997601 81997684 -19875485 - MIR3 SINE MIR -14 194 99 2087 109 24 0 chr13 81997686 81997979 -19875190 - AluSp SINE Alu -11 302 3 365 313 42 42 chr13 81998384 81998576 -19874593 - MIR SINE MIR -65 197 6 229 143 0 24 chr13 81998895 81998937 -19874232 - MIR SINE MIR -90 118 78 647 178 40 20 chr13 81999790 81999851 -19873318 - LTR37A LTR ERV1 -51 375 317 578 89 13 0 chr13 81999851 81999930 -19873239 - MADE1 DNA Mariner 0 80 1 647 178 40 20 chr13 81999930 82000020 -19873149 - LTR37A LTR ERV1 -109 317 221 338 204 11 0 chr13 82000022 82000110 -19873059 + (TA)n Simple_repeat Simple_repeat 1 89 0 319 148 0 0 chr13 82000111 82000165 -19873004 - L1MA8 LINE L1 -237 6054 6001 879 280 42 21 chr13 82000419 82000805 -19872364 - L1PBa LINE L1 -6380 483 90 1791 161 46 20 chr13 82000977 82001247 -19871922 - L1MB3 LINE L1 0 6183 5901 2249 120 0 3 chr13 82001247 82001548 -19871621 - AluSx SINE Alu -12 300 1 1791 161 46 20 chr13 82001548 82001626 -19871543 - L1MB3 LINE L1 -282 5901 5826 469 147 39 176 chr13 82001632 82001836 -19871333 - L1MC5 LINE L1 -182 7779 7604 281 292 0 11 chr13 82002434 82002523 -19870646 - MIR3 SINE MIR -4 204 117 225 0 0 0 chr13 82002709 82002734 -19870435 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2221 99 0 7 chr13 82002734 82003026 -19870143 - AluSx SINE Alu -22 290 1 687 221 7 7 chr13 82003026 82003166 -19870003 - AluJo SINE Alu -171 141 2 23 86 0 0 chr13 82003403 82003461 -19869708 + AT_rich Low_complexity Low_complexity 1 58 0 311 125 0 16 chr13 82003866 82003930 -19869239 + (TC)n Simple_repeat Simple_repeat 2 64 0 2225 133 0 0 chr13 82004871 82005172 -19867997 - AluSx SINE Alu -11 301 1 2027 129 0 3 chr13 82005312 82005598 -19867571 - AluSx SINE Alu -27 285 1 242 314 75 37 chr13 82005905 82006093 -19867076 - L2 LINE L2 -991 2323 2129 3363 159 16 2 chr13 82006208 82006781 -19866388 + L1MB2 LINE L1 5584 6164 -7 2240 102 3 0 chr13 82007147 82007454 -19865715 - AluSx SINE Alu 0 309 2 28 0 0 0 chr13 82007454 82007482 -19865687 + AT_rich Low_complexity Low_complexity 1 28 0 805 177 8 0 chr13 82007482 82007612 -19865557 - FLAM_C SINE Alu -2 131 1 2215 92 51 0 chr13 82008522 82008815 -19864354 - AluSx SINE Alu -4 308 1 198 71 0 0 chr13 82008925 82008953 -19864216 + (TG)n Simple_repeat Simple_repeat 2 29 0 952 186 30 69 chr13 82010278 82010403 -19862766 + AluJo SINE Alu 1 114 -198 2276 112 3 0 chr13 82010403 82010698 -19862471 - AluSp SINE Alu -17 296 1 952 186 30 69 chr13 82010698 82010803 -19862366 + AluJo SINE Alu 114 222 -90 524 227 84 79 chr13 82011701 82011904 -19861265 + MER63A DNA MER1_type 5 208 -2 21 57 0 0 chr13 82012549 82012584 -19860585 + AT_rich Low_complexity Low_complexity 1 35 0 1960 166 0 3 chr13 82013707 82014015 -19859154 + AluJb SINE Alu 3 309 -3 457 211 7 109 chr13 82014028 82014175 -19858994 - MER63 DNA MER1_type -302 760 3 607 298 114 37 chr13 82014177 82014715 -19858454 - L2 LINE L2 -221 3092 2511 967 171 0 13 chr13 82014743 82014901 -19858268 - FAM SINE Alu -19 156 1 180 0 0 0 chr13 82014908 82014928 -19858241 + (TTG)n Simple_repeat Simple_repeat 3 22 0 1754 124 0 44 chr13 82014942 82015217 -19857952 - AluSx SINE Alu -6 306 44 185 214 143 0 chr13 82015501 82015557 -19857612 - L2 LINE L2 -171 3101 3038 1905 121 0 0 chr13 82015601 82015858 -19857311 + AluSx SINE Alu 50 306 -6 693 189 4 31 chr13 82016732 82016997 -19856172 + CT-rich Low_complexity Low_complexity 1 257 0 188 227 280 0 chr13 82017009 82017084 -19856085 - L2 LINE L2 -18 3254 3159 2195 122 0 3 chr13 82017414 82017710 -19855459 + AluSx SINE Alu 1 295 -17 945 130 7 0 chr13 82018123 82018261 -19854908 + AluSp/q SINE Alu 165 303 -10 688 281 22 13 chr13 82018329 82018557 -19854612 + MIR SINE MIR 33 262 0 2157 132 6 10 chr13 82018782 82019093 -19854076 + AluSx SINE Alu 1 310 -2 295 196 0 0 chr13 82019322 82019373 -19853796 + MIR SINE MIR 79 129 -133 245 292 50 25 chr13 82019466 82019586 -19853583 - MLT1J LTR MaLR 0 511 389 415 244 28 74 chr13 82019814 82019990 -19853179 - MIR SINE MIR -78 184 17 255 157 0 20 chr13 82020321 82020372 -19852797 + MER4-int LTR ERV1 1111 1160 -5438 24 0 0 0 chr13 82020617 82020641 -19852528 + AT_rich Low_complexity Low_complexity 1 24 0 2063 121 4 0 chr13 82020678 82020979 -19852190 - AluSq SINE Alu 0 304 3 2229 99 3 10 chr13 82021218 82021521 -19851648 - AluSx SINE Alu -11 301 1 419 266 101 18 chr13 82022036 82022205 -19850964 + MIR SINE MIR 39 221 -41 1037 24 79 0 chr13 82022425 82022551 -19850618 + MER85 DNA T2_type 1 136 -3 22 0 0 0 chr13 82028292 82028314 -19844855 + AT_rich Low_complexity Low_complexity 1 22 0 333 68 0 0 chr13 82028384 82028428 -19844741 + (TG)n Simple_repeat Simple_repeat 2 45 0 1862 119 84 0 chr13 82030493 82030754 -19842415 + AluSx SINE Alu 1 283 -29 1053 159 0 17 chr13 82030891 82031067 -19842102 + FRAM SINE Alu 1 165 -11 197 65 32 0 chr13 82031156 82031187 -19841982 + (CA)n Simple_repeat Simple_repeat 2 33 0 3653 148 14 71 chr13 82031663 82032392 -19840777 + LTR8 LTR ERV1 1 687 -4 2013 111 44 0 chr13 82032463 82032765 -19840404 + AluSp SINE Alu 1 314 0 198 103 0 0 chr13 82032767 82032796 -19840373 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 348 24 0 0 chr13 82032795 82032836 -19840333 + (CA)n Simple_repeat Simple_repeat 2 42 0 193 238 148 30 chr13 82033036 82033137 -19840032 - MIR SINE MIR -80 182 70 358 271 166 11 chr13 82034022 82034203 -19838966 + MIR SINE MIR 47 255 -7 1257 235 55 0 chr13 82034435 82034724 -19838445 + MER7A DNA MER2_type 1 303 -43 1074 205 96 88 chr13 82034874 82034969 -19838200 + MLT1B LTR MaLR 1 94 -296 2049 123 3 3 chr13 82034969 82035261 -19837908 - AluSx SINE Alu -6 306 15 1074 205 96 88 chr13 82035261 82035550 -19837619 + MLT1B LTR MaLR 94 388 -2 2432 77 0 3 chr13 82037629 82037929 -19835240 - AluSc SINE Alu -6 303 5 5331 98 36 21 chr13 82038031 82038854 -19834315 + L1MA3 LINE L1 5367 6202 -103 2204 95 40 3 chr13 82039035 82039331 -19833838 + AluSx SINE Alu 1 307 -5 232 340 19 0 chr13 82039405 82039511 -19833658 + L1MC5 LINE L1 6999 7106 -855 324 271 17 8 chr13 82039574 82039692 -19833477 + L1MC4 LINE L1 7122 7240 -802 2348 161 35 10 chr13 82039876 82040279 -19832890 + MSTB1 LTR MaLR 19 431 -1 393 316 42 11 chr13 82040293 82040483 -19832686 + L1MC5 LINE L1 7357 7552 -409 189 107 0 0 chr13 82040501 82040529 -19832640 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 1820 153 4 7 chr13 82040529 82040810 -19832359 - AluJb SINE Alu -32 280 1 597 49 0 0 chr13 82041369 82041450 -19831719 + (TG)n Simple_repeat Simple_repeat 2 82 0 2491 90 0 0 chr13 82042587 82042897 -19830272 + AluSg SINE Alu 1 310 0 244 311 90 46 chr13 82044213 82044624 -19828545 + L2 LINE L2 2260 2688 -626 347 305 217 8 chr13 82044649 82045036 -19828133 + L2 LINE L2 2836 3303 -10 3620 31 0 0 chr13 82045189 82045607 -19827562 + L1PA3 LINE L1 5738 6155 0 2213 119 3 0 chr13 82045747 82046042 -19827127 + AluSx SINE Alu 1 296 -16 344 217 11 0 chr13 82046065 82046157 -19827012 + (ATG)n Simple_repeat Simple_repeat 3 95 0 1828 134 29 4 chr13 82047524 82047800 -19825369 + AluSx SINE Alu 1 283 -29 351 0 0 0 chr13 82047800 82047839 -19825330 + (CAT)n Simple_repeat Simple_repeat 2 40 0 365 39 20 0 chr13 82049054 82049105 -19824064 + (CA)n Simple_repeat Simple_repeat 2 53 0 290 295 84 0 chr13 82050108 82050203 -19822966 - MIR SINE MIR -139 123 21 345 296 65 97 chr13 82050481 82050802 -19822367 + L1ME LINE L1 5339 5649 -472 2249 119 0 0 chr13 82050937 82051240 -19821929 + AluSg SINE Alu 1 303 -7 1163 244 91 19 chr13 82051241 82051602 -19821567 - MER74B LTR ERVL -161 461 75 267 277 116 9 chr13 82052226 82052338 -19820831 - MIR SINE MIR -117 145 22 328 294 59 0 chr13 82052414 82052533 -19820636 - HAL1b LINE L1 -2 1346 1221 2065 138 0 28 chr13 82052715 82053033 -19820136 + AluJb SINE Alu 1 309 -3 843 120 30 15 chr13 82055026 82055159 -19818010 + AluJb SINE Alu 1 135 -177 1501 180 43 33 chr13 82055159 82055459 -19817710 + AluJo SINE Alu 1 303 -9 187 118 0 39 chr13 82056951 82057002 -19816167 + (GGA)n Simple_repeat Simple_repeat 2 50 0 488 275 127 0 chr13 82058108 82058250 -19814919 - MER5B DNA MER1_type -6 172 13 27 73 0 0 chr13 82058396 82058451 -19814718 + AT_rich Low_complexity Low_complexity 1 55 0 354 297 141 13 chr13 82058846 82059018 -19814151 - MIR3 SINE MIR -7 201 2 924 71 79 0 chr13 82061405 82061531 -19811638 - MER85 DNA T2_type 0 139 4 207 0 0 0 chr13 82061922 82061945 -19811224 + (CA)n Simple_repeat Simple_repeat 2 24 0 249 327 37 28 chr13 82062259 82062366 -19810803 + L3b LINE CR1 1388 1495 -88 459 113 0 0 chr13 82064504 82064575 -19808594 + (CCA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr13 82067850 82067872 -19805297 + AT_rich Low_complexity Low_complexity 1 22 0 2352 98 3 7 chr13 82068829 82069135 -19804034 - AluSx SINE Alu -7 305 1 2670 180 48 4 chr13 82070098 82070636 -19802533 - L1MB3 LINE L1 -7 6176 5615 342 288 105 33 chr13 82073053 82073206 -19799963 + L1MC4a LINE L1 5667 5830 -1978 1915 145 3 7 chr13 82073887 82074183 -19798986 + AluJo SINE Alu 5 299 -13 394 313 61 6 chr13 82074843 82075006 -19798163 + L3 LINE CR1 775 946 -631 506 252 136 7 chr13 82075050 82075197 -19797972 + MER5B DNA MER1_type 8 173 -5 480 360 38 8 chr13 82075351 82075615 -19797554 + L3 LINE CR1 1212 1483 -94 288 239 31 135 chr13 82075643 82075806 -19797363 - MER5A DNA MER1_type -8 181 36 * 352 309 16 32 chr13 82075688 82075811 -19797358 + MER5A DNA MER1_type 50 170 -19 303 113 0 0 chr13 82075922 82075975 -19797194 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 643 216 72 11 chr13 82076549 82076730 -19796439 - L1MD3 LINE L1 0 7995 7804 267 31 0 0 chr13 82077962 82077994 -19795175 + (A)n Simple_repeat Simple_repeat 1 32 0 509 133 24 0 chr13 82078446 82078529 -19794640 + L1M3 LINE L1 5696 5780 -391 838 225 0 17 chr13 82078542 82078720 -19794449 - FRAM SINE Alu -1 175 1 2089 117 7 3 chr13 82078763 82079080 -19794089 - AluSx SINE Alu 0 318 1 2316 96 3 0 chr13 82079698 82079989 -19793180 + AluSx SINE Alu 1 292 -20 306 0 0 0 chr13 82079990 82080024 -19793145 + (CA)n Simple_repeat Simple_repeat 2 35 0 1694 171 24 14 chr13 82082082 82082374 -19790795 + AluJo SINE Alu 1 295 -17 3634 73 5 0 chr13 82083371 82083820 -19789349 - MLT2A2 LTR ERVL -2 451 1 243 0 0 0 chr13 82083918 82083945 -19789224 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 497 360 6 0 chr13 82084173 82084337 -19788832 + MIR SINE MIR 97 261 -1 1609 71 13 59 chr13 82085275 82085514 -19787655 - MER30 DNA MER1_type 0 230 3 2208 120 13 0 chr13 82085894 82086195 -19786974 - AluSq SINE Alu -8 305 1 201 156 0 0 chr13 82086548 82086580 -19786589 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 1843 169 3 10 chr13 82086710 82087018 -19786151 + AluJo SINE Alu 1 306 -6 1742 209 102 5 chr13 82087386 82087808 -19785361 - L1MC2 LINE L1 -8 6336 5874 1000 209 16 63 chr13 82089379 82089633 -19783536 + L1MD2 LINE L1 6104 6345 -14 2024 94 7 49 chr13 82090461 82090768 -19782401 + AluJo SINE Alu 1 294 -18 2576 54 0 0 chr13 82091966 82092264 -19780905 - AluSg SINE Alu -12 298 1 336 260 134 16 chr13 82092584 82092711 -19780458 - MIR SINE MIR -120 142 1 244 297 194 0 chr13 82092758 82092913 -19780256 - MIR SINE MIR -27 235 51 189 311 66 41 chr13 82093115 82093237 -19779932 + L2 LINE L2 2672 2796 -518 254 240 16 58 chr13 82093779 82093900 -19779269 + L1ME LINE L1 5255 5370 -872 1695 146 65 0 chr13 82093951 82094226 -19778943 + AluJo SINE Alu 1 293 -19 2199 125 7 0 chr13 82094992 82095297 -19777872 + AluSq SINE Alu 1 307 -6 22 88 0 0 chr13 82096271 82096328 -19776841 + AT_rich Low_complexity Low_complexity 1 57 0 390 223 11 43 chr13 82097488 82097582 -19775587 + MIR SINE MIR 64 154 -108 2756 135 11 20 chr13 82097625 82098077 -19775092 - MER83 LTR ERV1 0 448 1 2033 233 47 5 chr13 82101555 82102144 -19771025 - MER39 LTR ERV1 -27 680 6 261 247 25 12 chr13 82103361 82103442 -19769727 + MER58 DNA MER1_type 19 100 -2320 479 176 24 0 chr13 82103442 82103527 -19769642 + MER58 DNA MER1_type 2331 2417 -3 686 255 145 38 chr13 82104238 82104630 -19768539 - MLT1C LTR MaLR -33 434 1 471 196 0 0 chr13 82105477 82105579 -19767590 - L1MB4 LINE L1 0 6180 6079 787 206 19 0 chr13 82105996 82106156 -19767013 - MLT1C LTR MaLR -289 178 16 662 150 169 19 chr13 82107786 82107946 -19765223 - MER20 DNA MER1_type -35 184 1 944 161 25 0 chr13 82107985 82108147 -19765022 + FRAM SINE Alu 4 169 -7 24 53 0 0 chr13 82113162 82113200 -19759969 + AT_rich Low_complexity Low_complexity 1 38 0 249 283 26 86 chr13 82113867 82114019 -19759150 + L1ME LINE L1 5637 5779 -342 649 174 221 6 chr13 82114123 82114295 -19758874 - MER46A DNA MER2_type 0 236 28 828 211 84 4 chr13 82115240 82115491 -19757678 + MER33 DNA MER1_type 12 282 -42 461 198 57 0 chr13 82115491 82115597 -19757572 - FRAM SINE Alu -7 169 58 871 137 0 0 chr13 82115753 82115884 -19757285 - FLAM_C SINE Alu -1 132 2 246 273 0 0 chr13 82115884 82115939 -19757230 + MER33 DNA MER1_type 309 363 0 2482 79 3 0 chr13 82117810 82118114 -19755055 - AluSq SINE Alu -8 305 1 244 277 75 11 chr13 82119168 82119262 -19753907 + MIR SINE MIR 118 217 -45 1939 141 14 27 chr13 82121102 82121399 -19751770 + AluJo SINE Alu 1 293 -19 207 0 0 0 chr13 82121399 82121422 -19751747 + (GA)n Simple_repeat Simple_repeat 2 24 0 242 195 0 0 chr13 82122602 82122643 -19750526 + Alu SINE Alu 2 42 -91 427 216 62 0 chr13 82123321 82123418 -19749751 - MER5B DNA MER1_type 0 178 76 234 150 0 0 chr13 82123951 82123991 -19749178 + (CAGAA)n Simple_repeat Simple_repeat 4 43 0 2534 45 0 7 chr13 82124682 82124973 -19748196 + AluY SINE Alu 1 289 -22 2316 93 10 3 chr13 82125042 82125343 -19747826 - AluSq SINE Alu -10 303 1 292 312 43 30 chr13 82127499 82127665 -19745504 + MIR SINE MIR 16 181 -27 315 317 158 16 chr13 82127685 82127868 -19745301 - L1MC4 LINE L1 -2 8040 7832 275 232 155 54 chr13 82127885 82128053 -19745116 - L1MC5 LINE L1 -278 7683 7499 885 185 115 0 chr13 82129263 82129463 -19743706 - L1MA4 LINE L1 -6 6294 6072 1854 125 45 31 chr13 82129813 82130101 -19743068 + AluSx SINE Alu 1 292 -20 329 289 60 40 chr13 82130398 82130547 -19742622 + L1ME LINE L1 5566 5717 -404 1194 153 4 87 chr13 82130748 82130977 -19742192 - AluJo SINE Alu -102 210 1 209 211 365 0 chr13 82133065 82133169 -19740000 + L2 LINE L2 3169 3310 -3 208 303 49 57 chr13 82133630 82133752 -19739417 + L2 LINE L2 3173 3293 -20 29 47 0 0 chr13 82135475 82135518 -19737651 + AT_rich Low_complexity Low_complexity 1 43 0 2501 73 0 10 chr13 82136850 82137152 -19736017 + AluSx SINE Alu 1 299 -13 275 240 85 47 chr13 82137742 82137871 -19735298 + MLT1J LTR MaLR 33 166 -345 216 271 93 25 chr13 82138414 82138532 -19734637 + L2 LINE L2 3183 3308 -5 24 0 0 0 chr13 82138742 82138766 -19734403 + AT_rich Low_complexity Low_complexity 1 24 0 615 246 0 8 chr13 82140223 82140349 -19732820 - FLAM_C SINE Alu -17 126 2 1732 154 45 4 chr13 82141247 82141346 -19731823 + AluSx SINE Alu 21 114 -198 204 67 0 0 chr13 82141346 82141376 -19731793 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1732 154 45 4 chr13 82141376 82141542 -19731627 + AluSx SINE Alu 114 297 -15 4810 85 31 0 chr13 82144570 82145240 -19727929 - LTR8 LTR ERV1 0 691 1 1470 103 0 17 chr13 82145446 82145680 -19727489 + L1PA7 LINE L1 5925 6154 0 618 246 79 0 chr13 82145822 82146025 -19727144 - MER20 DNA MER1_type 0 219 1 249 296 86 53 chr13 82146143 82146295 -19726874 + MIR SINE MIR 73 229 -33 357 255 131 0 chr13 82146873 82147018 -19726151 - L1MC4a LINE L1 -1831 5977 5814 676 284 80 50 chr13 82147097 82147302 -19725867 - L1MC4a LINE L1 -2135 5673 5476 1267 149 118 115 chr13 82147302 82147685 -19725484 + MLT1B LTR MaLR 3 386 -4 676 284 80 50 chr13 82147685 82147881 -19725288 - L1MC4a LINE L1 -2332 5476 5260 403 241 102 36 chr13 82149770 82149936 -19723233 + MER5B DNA MER1_type 2 178 0 286 346 28 0 chr13 82150734 82150841 -19722328 + MIR3 SINE MIR 98 207 -1 451 274 50 39 chr13 82151397 82151576 -19721593 + L1MD1 LINE L1 5000 5180 -966 338 205 325 7 chr13 82152613 82152764 -19720405 + L1MB8 LINE L1 5399 5597 -577 3353 167 68 61 chr13 82152816 82153222 -19719947 - MER54B LTR ERVL -3 790 375 324 203 14 0 chr13 82153222 82153296 -19719873 + L1MA4 LINE L1 6210 6284 -16 3353 167 68 61 chr13 82153296 82153674 -19719495 - MER54B LTR ERVL -418 375 1 2266 166 82 2 chr13 82153674 82154161 -19719008 + L1MB8 LINE L1 5615 6140 -38 892 188 7 0 chr13 82154291 82154435 -19718734 - FRAM SINE Alu -31 145 1 1110 233 149 36 chr13 82154494 82155175 -19717994 + L1MD1 LINE L1 5363 5980 -262 2055 105 56 11 chr13 82155175 82155461 -19717708 - AluSx SINE Alu -13 299 1 1110 233 149 36 chr13 82155461 82155485 -19717684 + L1MD1 LINE L1 5980 6000 -242 23 0 0 0 chr13 82155845 82155868 -19717301 + AT_rich Low_complexity Low_complexity 1 23 0 279 221 137 0 chr13 82156625 82156720 -19716449 - MER20 DNA MER1_type -4 215 108 829 304 102 15 chr13 82159744 82160136 -19713033 + MLT1J2 LTR MaLR 21 446 -4 2157 110 0 13 chr13 82160617 82160918 -19712251 + AluSx SINE Alu 1 297 -15 353 284 138 60 chr13 82161173 82161405 -19711764 - MIR SINE MIR -10 252 3 208 253 0 67 chr13 82163771 82163846 -19709323 + GA-rich Low_complexity Low_complexity 6 75 0 364 297 77 39 chr13 82164992 82165302 -19707867 + L2 LINE L2 1436 1757 -1557 214 345 103 11 chr13 82165761 82165935 -19707234 + L2 LINE L2 2206 2395 -919 192 360 72 9 chr13 82165951 82166062 -19707107 + L2 LINE L2 3138 3255 -17 649 204 111 23 chr13 82166261 82166433 -19706736 - MER5A DNA MER1_type 0 189 3 435 244 219 75 chr13 82166629 82167109 -19706060 + MLT1H LTR MaLR 1 549 0 261 250 159 93 chr13 82167458 82167962 -19705207 + MLT1H LTR MaLR 5 541 -8 719 291 9 0 chr13 82169613 82169826 -19703343 - MIR SINE MIR -13 249 35 683 176 50 0 chr13 82170468 82170587 -19702582 + AluSq/x SINE Alu 1 125 -188 357 269 19 0 chr13 82172842 82172950 -19700219 + L1MD2 LINE L1 5887 5996 -363 201 188 83 0 chr13 82173423 82173471 -19699698 + MIR SINE MIR 206 257 -5 1355 175 77 45 chr13 82173507 82173793 -19699376 + AluJb SINE Alu 1 295 -17 237 212 182 15 chr13 82174563 82174629 -19698540 + L2 LINE L2 3196 3272 0 284 296 70 85 chr13 82176982 82177181 -19695988 - MIR SINE MIR -1 261 66 2326 107 7 0 chr13 82177760 82178058 -19695111 - AluSx SINE Alu -12 300 1 371 268 22 51 chr13 82178464 82178602 -19694567 + L1MA10 LINE L1 6186 6319 -15 204 40 0 0 chr13 82178869 82178894 -19694275 + (A)n Simple_repeat Simple_repeat 1 25 0 2029 129 4 0 chr13 82180588 82180866 -19692303 + AluSx SINE Alu 1 279 -33 2452 216 84 15 chr13 82181903 82182513 -19690656 + MER82 DNA MER2_type 1 652 -1 1367 170 4 17 chr13 82182842 82183077 -19690092 - AluJb SINE Alu -17 295 64 917 127 30 0 chr13 82183076 82183210 -19689959 - AluJo SINE Alu -174 138 1 * 744 89 17 128 chr13 82184168 82184202 -19688967 - L1MA8 LINE L1 -4 6287 6251 1731 169 21 17 chr13 82184202 82184492 -19688677 + AluJb SINE Alu 1 291 -21 744 89 17 128 chr13 82184492 82184636 -19688533 - L1MA8 LINE L1 -40 6251 6129 2000 89 82 11 chr13 82184636 82184916 -19688253 - AluSx SINE Alu -12 300 1 268 302 201 0 chr13 82185144 82185183 -19687986 - MIR SINE MIR -6 256 226 1828 185 42 0 chr13 82185183 82185513 -19687656 - MER2 DNA MER2_type 0 344 1 268 302 201 0 chr13 82185513 82185622 -19687547 - MIR SINE MIR -36 226 78 581 259 23 23 chr13 82186848 82187022 -19686147 + MIR SINE MIR 2 175 -87 2268 105 3 0 chr13 82187345 82187640 -19685529 - AluSx SINE Alu -9 303 8 211 194 0 0 chr13 82187788 82187824 -19685345 + (CA)n Simple_repeat Simple_repeat 2 37 0 223 284 0 30 chr13 82188599 82188666 -19684503 + MIR SINE MIR 2 66 -196 1631 247 43 58 chr13 82188825 82189498 -19683671 + L1MB7 LINE L1 5512 6174 -10 376 271 98 0 chr13 82189533 82189655 -19683514 + L2 LINE L2 3137 3270 -2 1182 72 26 67 chr13 82189807 82190001 -19683168 + PABL_A LTR ERV1 2 187 -473 1830 199 38 30 chr13 82193850 82194243 -19678926 - MSTD LTR MaLR 0 396 1 182 377 33 25 chr13 82194396 82194518 -19678651 - L2 LINE L2 -42 3230 3108 25 51 0 0 chr13 82194962 82195001 -19678168 + AT_rich Low_complexity Low_complexity 1 39 0 496 72 0 0 chr13 82195013 82195082 -19678087 - L1MA1 LINE L1 0 6302 6234 1963 125 39 0 chr13 82197434 82197713 -19675456 - AluSx SINE Alu -19 293 4 2104 232 70 12 chr13 82198084 82198698 -19674471 - ERVL LTR ERVL -5076 688 2 2362 63 7 13 chr13 82202261 82202560 -19670609 - AluY SINE Alu -14 297 1 273 68 0 23 chr13 82202582 82202626 -19670543 + Alu SINE Alu 35 77 -223 2079 123 0 0 chr13 82202737 82203014 -19670155 - AluSx SINE Alu -35 277 1 249 286 36 24 chr13 82203014 82203098 -19670071 + L2 LINE L2 3185 3269 -3 253 284 11 11 chr13 82203104 82203192 -19669977 + GA-rich Low_complexity Low_complexity 1 88 0 2182 123 3 0 chr13 82203360 82203653 -19669516 + AluSx SINE Alu 1 294 -18 433 325 42 12 chr13 82203842 82204008 -19669161 - MIR SINE MIR -71 191 21 1570 175 0 7 chr13 82204008 82204277 -19668892 + AluJo SINE Alu 38 304 -8 239 324 33 66 chr13 82205564 82205746 -19667423 + MER5B DNA MER1_type 1 176 -2 276 296 71 0 chr13 82205919 82206017 -19667152 + MIR SINE MIR 85 189 -73 228 189 132 0 chr13 82206109 82206162 -19667007 + MER63A DNA MER1_type 148 207 -3 366 305 11 32 chr13 82206532 82206722 -19666447 - L2 LINE L2 -3 3310 3125 1041 247 207 43 chr13 82206811 82207055 -19666114 + MLT1E1 LTR MaLR 1 204 -420 2144 110 20 13 chr13 82207055 82207356 -19665813 + AluSx SINE Alu 1 303 -9 1041 247 207 43 chr13 82207356 82207675 -19665494 + MLT1E1 LTR MaLR 204 623 -1 361 342 92 0 chr13 82208098 82208250 -19664919 - L2 LINE L2 -932 2382 2217 233 264 170 9 chr13 82208344 82208450 -19664719 + L2 LINE L2 3142 3264 -8 201 180 0 60 chr13 82208491 82208541 -19664628 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 364 256 122 11 chr13 82209194 82209374 -19663795 + L1ME4a LINE L1 5700 5899 -222 1843 144 197 8 chr13 82210200 82210560 -19662609 + MSTA LTR MaLR 1 428 0 363 227 13 104 chr13 82210637 82210791 -19662378 - MER58B DNA MER1_type 0 341 202 378 0 0 0 chr13 82211795 82211837 -19661332 + (TG)n Simple_repeat Simple_repeat 2 43 0 1209 135 0 0 chr13 82211838 82212008 -19661161 - AluSq SINE Alu -12 301 132 715 60 0 0 chr13 82212010 82212094 -19661075 + AluSq/x SINE Alu 46 129 -183 2101 138 0 16 chr13 82212865 82213169 -19660000 - AluJb SINE Alu -13 299 1 746 179 14 0 chr13 82213411 82213556 -19659613 + L1MC3 LINE L1 7117 7263 -522 908 262 24 27 chr13 82213557 82213780 -19659389 - Cheshire DNA MER1_type -2111 309 86 2073 136 7 0 chr13 82213780 82214081 -19659088 + AluSx SINE Alu 1 303 -9 908 262 24 27 chr13 82214081 82214151 -19659018 - Cheshire DNA MER1_type -2334 86 17 2877 251 82 4 chr13 82215525 82215965 -19657204 + L1MB5 LINE L1 2600 3005 -3141 1767 179 3 28 chr13 82215965 82216283 -19656886 + AluJb SINE Alu 3 312 0 2877 251 82 4 chr13 82216283 82216749 -19656420 + L1MB5 LINE L1 3005 3576 -2570 * 3277 216 30 8 chr13 82216738 82217529 -19655640 + L1MB5 LINE L1 4233 5041 -1105 4282 167 40 21 chr13 82217531 82218170 -19654999 + L1MB5 LINE L1 5267 5927 -247 1786 174 7 10 chr13 82218170 82218464 -19654705 - AluJb SINE Alu -19 293 1 4282 167 40 21 chr13 82218464 82218675 -19654494 + L1MB5 LINE L1 5927 6133 -41 2507 159 63 15 chr13 82218678 82219156 -19654013 + L1MB2 LINE L1 5670 6170 -1 671 261 36 50 chr13 82219536 82219885 -19653284 + MLT1E2 LTR MaLR 207 450 -55 1778 169 0 34 chr13 82221295 82221615 -19651554 + AluSx SINE Alu 1 309 -3 1224 298 140 29 chr13 82221747 82222977 -19650192 + L2 LINE L2 1609 2975 -339 305 243 15 117 chr13 82223031 82223237 -19649932 + L2 LINE L2 3121 3305 -8 2048 136 17 3 chr13 82223522 82223824 -19649345 + AluSx SINE Alu 1 306 -6 760 112 45 30 chr13 82223927 82224061 -19649108 + AluJo SINE Alu 2 137 -175 280 263 128 38 chr13 82224225 82224358 -19648811 + L2 LINE L2 2869 3013 -300 1015 200 18 131 chr13 82224742 82225237 -19647932 - L1MC5 LINE L1 -157 7804 7366 2047 145 13 0 chr13 82225315 82225618 -19647551 - AluSx SINE Alu -5 307 1 399 184 0 0 chr13 82226044 82226131 -19647038 + GA-rich Low_complexity Low_complexity 4 90 0 2283 118 0 3 chr13 82226382 82226695 -19646474 + AluSx SINE Alu 1 312 0 548 234 59 28 chr13 82226789 82227458 -19645711 + HAL1b LINE L1 77 795 -553 414 216 0 14 chr13 82227475 82227582 -19645587 + MLT1B LTR MaLR 44 147 -227 719 194 8 15 chr13 82227583 82227717 -19645452 + FLAM_A SINE Alu 5 137 -5 342 0 0 0 chr13 82227726 82227764 -19645405 + (TC)n Simple_repeat Simple_repeat 1 38 0 1149 178 20 15 chr13 82227764 82227966 -19645203 + MLT1B LTR MaLR 188 390 0 2284 122 0 0 chr13 82228203 82228507 -19644662 - AluSq SINE Alu -9 304 1 26 0 0 0 chr13 82228681 82228707 -19644462 + AT_rich Low_complexity Low_complexity 1 26 0 290 26 26 0 chr13 82228749 82228788 -19644381 + (CA)n Simple_repeat Simple_repeat 2 41 0 710 209 12 17 chr13 82229181 82229353 -19643816 - MIR SINE MIR -25 237 67 2293 117 0 0 chr13 82229428 82229728 -19643441 + AluSx SINE Alu 1 300 -12 189 107 0 0 chr13 82229728 82229756 -19643413 + (GA)n Simple_repeat Simple_repeat 1 28 0 2408 82 0 22 chr13 82230102 82230418 -19642751 - AluSc SINE Alu 0 309 1 957 187 110 9 chr13 82230814 82231033 -19642136 + L1MC4 LINE L1 7797 8037 -5 22 0 0 0 chr13 82232691 82232713 -19640456 + AT_rich Low_complexity Low_complexity 1 22 0 588 259 66 18 chr13 82232713 82232879 -19640290 + L1ME1 LINE L1 5988 6161 -5 200 318 47 12 chr13 82233614 82233699 -19639470 + MIR SINE MIR 49 136 -126 332 236 57 32 chr13 82233744 82233867 -19639302 + L2 LINE L2 3142 3267 -5 266 0 29 0 chr13 82235441 82235475 -19637694 + (TA)n Simple_repeat Simple_repeat 2 36 0 2586 64 0 0 chr13 82235798 82236142 -19637027 + AluY SINE Alu 1 344 0 358 150 25 38 chr13 82236823 82236838 -19636331 - MER41B LTR ERV1 -76 559 545 2222 129 0 0 chr13 82236838 82237147 -19636022 + AluSx SINE Alu 1 309 -3 358 150 25 38 chr13 82237147 82237211 -19635958 - MER41B LTR ERV1 -90 545 481 2281 148 0 0 chr13 82237211 82237555 -19635614 - L1P4 LINE L1 -381 5785 5442 821 97 22 0 chr13 82237543 82237677 -19635492 + L1P4 LINE L1 5325 5461 -705 * 458 222 17 17 chr13 82237845 82237962 -19635207 - MER4A LTR ERV1 -547 117 1 2030 151 0 0 chr13 82238249 82238540 -19634629 + AluSx SINE Alu 1 291 -21 1308 198 139 36 chr13 82238784 82239143 -19634026 - MSTD LTR MaLR 0 396 1 5650 206 59 39 chr13 82239154 82240413 -19632756 - MSTD-int LTR MaLR -13 1722 439 986 173 61 143 chr13 82240577 82240906 -19632263 - MLT1A1 LTR MaLR -63 302 1 448 262 19 15 chr13 82241336 82241495 -19631674 + MLT1L LTR MaLR 382 563 -44 1024 234 52 13 chr13 82241496 82241911 -19631258 + L1MD2 LINE L1 2370 2808 -3618 514 123 114 35 chr13 82242506 82242620 -19630549 + LTR52 LTR ERVL 1 123 -298 454 171 238 22 chr13 82242602 82242783 -19630386 + HsTC2 DNA Tc2 35 254 -1644 * 504 218 145 6 chr13 82242800 82242979 -19630190 + HsTC2 DNA Tc2 1695 1898 0 2193 113 0 0 chr13 82243146 82243457 -19629712 - AluSx SINE Alu 0 311 1 241 260 39 26 chr13 82244262 82244339 -19628830 + L2 LINE L2 2612 2689 -625 205 302 115 39 chr13 82244473 82244655 -19628514 + L2 LINE L2 2869 3064 -208 212 250 69 0 chr13 82245504 82245576 -19627593 - MIR3 SINE MIR -46 162 86 383 275 108 40 chr13 82245857 82246079 -19627090 + MIR SINE MIR 5 241 -21 391 134 45 0 chr13 82246476 82246543 -19626626 - L1M2 LINE L1 -6299 550 481 429 185 92 59 chr13 82246592 82246711 -19626458 - MER65B LTR ERV1 -408 123 1 27 49 0 0 chr13 82247263 82247304 -19625865 + AT_rich Low_complexity Low_complexity 1 41 0 966 229 43 43 chr13 82247738 82248113 -19625056 + L1MD2 LINE L1 4652 5026 -1400 1878 165 0 3 chr13 82248132 82248417 -19624752 + AluSx SINE Alu 1 284 -28 914 242 131 4 chr13 82248444 82248805 -19624364 + MER57A LTR ERV1 20 403 0 1535 212 22 24 chr13 82248809 82249224 -19623945 + L1MD2 LINE L1 5031 5444 -982 9801 202 35 14 chr13 82249225 82251153 -19622016 + L1MA4A LINE L1 1 1968 -4881 43633 77 31 6 chr13 82251153 82258291 -19614878 + L1PA2 LINE L1 704 5544 -1313 2083 132 0 26 chr13 82258291 82258602 -19614567 + AluSx SINE Alu 1 303 -9 43633 77 31 6 chr13 82258602 82259949 -19613220 + L1PA2 LINE L1 5544 6857 0 1446 174 0 19 chr13 82259949 82260208 -19612961 + AluJo SINE Alu 1 254 -58 593 171 0 0 chr13 82260208 82260313 -19612856 + AluJb SINE Alu 192 296 -16 7915 156 32 39 chr13 82260328 82261695 -19611474 + L1MA4A LINE L1 4489 5864 -1141 1638 193 14 7 chr13 82261695 82261980 -19611189 + AluJo SINE Alu 1 287 -25 7915 156 32 39 chr13 82261980 82262584 -19610585 + L1MA4A LINE L1 5864 6438 -567 1152 101 0 0 chr13 82262584 82262762 -19610407 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 7915 156 32 39 chr13 82262762 82263323 -19609846 + L1MA4A LINE L1 6438 7001 -4 4153 190 90 36 chr13 82263319 82264457 -19608712 + L1MD2 LINE L1 5432 6635 -4 * 186 322 0 0 chr13 82264855 82264914 -19608255 - L2 LINE L2 0 3313 3255 7292 26 0 0 chr13 82265461 82266315 -19606854 + L1PA4 LINE L1 5302 6155 0 28 48 0 0 chr13 82266879 82266921 -19606248 + AT_rich Low_complexity Low_complexity 1 42 0 2213 152 143 2 chr13 82267019 82267474 -19605695 + L1MB7 LINE L1 5647 6165 -19 260 229 16 0 chr13 82267814 82267875 -19605294 - L1ME3 LINE L1 -220 5942 5881 1867 181 40 31 chr13 82267888 82268309 -19604860 - L1ME3 LINE L1 -374 5790 5366 1698 171 46 9 chr13 82268384 82268734 -19604435 - MER93b LTR ERV1 0 373 11 1788 128 55 28 chr13 82268736 82269025 -19604144 - AluSx SINE Alu -15 297 1 1923 144 43 45 chr13 82269257 82269633 -19603536 - THE1C LTR MaLR 0 375 1 265 261 61 43 chr13 82269962 82270077 -19603092 + LTR35 LTR ERV1 1 117 -501 631 240 61 71 chr13 82270184 82270523 -19602646 + LTR35 LTR ERV1 350 618 0 333 313 67 26 chr13 82270558 82270826 -19602343 - L1M4 LINE L1 -2136 4010 3732 423 116 0 0 chr13 82271186 82271255 -19601914 - Alu SINE Alu -4 308 240 1942 120 4 4 chr13 82271258 82271533 -19601636 - AluSx SINE Alu -37 275 1 539 295 42 45 chr13 82271740 82271905 -19601264 - L1M4 LINE L1 -3113 3033 2869 2086 129 7 0 chr13 82271905 82272192 -19600977 - AluSx SINE Alu -23 289 1 539 295 42 45 chr13 82272192 82272385 -19600784 - L1M4 LINE L1 -3277 2869 2676 1524 218 85 28 chr13 82272743 82273133 -19600036 + MLT1C LTR MaLR 53 464 -3 207 0 0 0 chr13 82273655 82273678 -19599491 + (TTG)n Simple_repeat Simple_repeat 2 24 0 231 36 0 0 chr13 82274463 82274491 -19598678 + (T)n Simple_repeat Simple_repeat 1 28 0 234 303 97 48 chr13 82274582 82274810 -19598359 + L2 LINE L2 1547 1785 -1529 379 284 162 0 chr13 82274982 82275130 -19598039 + L2 LINE L2 1786 1957 -1357 2745 116 23 28 chr13 82275137 82275482 -19597687 + MSTA LTR MaLR 1 345 -83 2052 131 50 39 chr13 82275482 82275842 -19597327 + THE1B LTR MaLR 1 364 0 2745 116 23 28 chr13 82275842 82275926 -19597243 + MSTA LTR MaLR 345 428 0 1154 246 131 94 chr13 82275931 82276186 -19596983 + L2 LINE L2 1982 2226 -1088 2061 108 16 22 chr13 82276186 82276500 -19596669 + AluSx SINE Alu 1 312 0 1154 246 131 94 chr13 82276500 82276954 -19596215 + L2 LINE L2 2226 2717 -597 1079 224 39 0 chr13 82276988 82277247 -19595922 - L1MEc LINE L1 -2322 3893 3625 470 316 92 18 chr13 82277348 82277576 -19595593 + L2 LINE L2 2702 2946 -368 1051 147 51 23 chr13 82277583 82277760 -19595409 - MER1B DNA MER1_type -4 335 154 15890 146 27 7 chr13 82277760 82282874 -19590295 - L1M1 LINE L1 -743 6822 1756 3983 48 89 2 chr13 82282902 82283838 -19589331 - MER11A LTR ERVK 0 1266 1 10443 156 32 16 chr13 82283838 82285547 -19587622 - L1M1 LINE L1 -5818 1747 13 235 193 48 24 chr13 82285561 82285644 -19587525 - L1MEc LINE L1 -4086 2310 2226 1923 195 54 20 chr13 82286369 82286816 -19586353 - L1MD3 LINE L1 -1 7994 7533 2019 211 24 2 chr13 82286927 82287391 -19585778 + L1M4 LINE L1 2532 3005 -3141 367 155 0 0 chr13 82287395 82287453 -19585716 - ERVL LTR ERVL -779 4985 4928 799 218 14 0 chr13 82289003 82289150 -19584019 - MER5A DNA MER1_type -40 149 1 913 113 0 15 chr13 82289256 82289389 -19583780 + AluSq/x SINE Alu 3 133 -179 246 235 49 77 chr13 82290369 82290501 -19582668 + L1MB2 LINE L1 5992 6119 -52 2540 58 3 3 chr13 82290501 82290812 -19582357 + AluY SINE Alu 1 311 0 246 235 49 77 chr13 82290812 82290862 -19582307 + L1MB2 LINE L1 6119 6169 -2 994 263 20 7 chr13 82291253 82291550 -19581619 - L1MB2 LINE L1 -193 5978 5678 585 297 42 7 chr13 82291586 82291872 -19581297 - L1MB2 LINE L1 -1332 4814 4519 1166 289 88 0 chr13 82291879 82292343 -19580826 - L1MB2 LINE L1 -3263 2883 2379 368 291 179 32 chr13 82292391 82293052 -19580117 + HAL1b LINE L1 99 856 -492 230 240 70 50 chr13 82293606 82293706 -19579463 - HAL1 LINE L1 -883 1624 1523 328 322 137 7 chr13 82293728 82293874 -19579295 + HAL1 LINE L1 1700 1864 -643 23 33 0 0 chr13 82293911 82293941 -19579228 + AT_rich Low_complexity Low_complexity 1 30 0 292 246 23 9 chr13 82294476 82294606 -19578563 + HAL1b LINE L1 794 2314 -193 694 234 8 0 chr13 82294697 82294825 -19578344 + FAM SINE Alu 1 129 -56 2527 259 121 40 chr13 82294837 82295891 -19577278 + L1ME2 LINE L1 2136 3104 -3111 2367 89 3 3 chr13 82295891 82296194 -19576975 + AluSc SINE Alu 1 303 -6 2527 259 121 40 chr13 82296194 82296454 -19576715 + L1ME2 LINE L1 3104 3342 -2873 2081 133 3 16 chr13 82296454 82296770 -19576399 + AluJb SINE Alu 1 312 0 2527 259 121 40 chr13 82296770 82297165 -19576004 + L1ME2 LINE L1 3342 3955 -2260 1298 246 84 16 chr13 82297169 82297682 -19575487 + L1ME2 LINE L1 5334 5881 -352 1114 194 16 0 chr13 82297752 82297938 -19575231 + MER58A DNA MER1_type 35 223 -1 1035 211 89 53 chr13 82297940 82298199 -19574970 + L1ME2 LINE L1 5875 6150 -83 1292 185 123 64 chr13 82298199 82298637 -19574532 + MER31B LTR ERV1 3 466 0 1035 211 89 53 chr13 82298637 82298714 -19574455 + L1ME2 LINE L1 6150 6223 -10 244 260 65 24 chr13 82298850 82298973 -19574196 + L1MC4 LINE L1 7914 8041 -1 227 157 14 0 chr13 82300869 82300939 -19572230 + (TA)n Simple_repeat Simple_repeat 1 71 0 2257 103 0 0 chr13 82300940 82301230 -19571939 - AluSq SINE Alu -23 290 1 377 261 0 11 chr13 82301617 82301709 -19571460 - MIR SINE MIR -44 218 128 831 162 56 56 chr13 82301722 82301918 -19571251 + L1M3 LINE L1 5299 5497 -686 1904 126 0 62 chr13 82301918 82302243 -19570926 + AluSx SINE Alu 1 305 -7 831 162 56 56 chr13 82302243 82302262 -19570907 + L1M3 LINE L1 5496 5514 -669 902 192 10 25 chr13 82302374 82302577 -19570592 + AluJo SINE Alu 82 281 -31 334 325 16 24 chr13 82302751 82302877 -19570292 + MIR3 SINE MIR 63 187 -21 2773 86 6 0 chr13 82303052 82303414 -19569755 - THE1B LTR MaLR 0 364 1 1832 185 127 21 chr13 82303517 82304078 -19569091 - Charlie1 DNA MER1_type 0 2761 2142 350 270 14 0 chr13 82304071 82304145 -19569024 - Charlie1 DNA MER1_type -2686 75 1 * 294 280 40 10 chr13 82304191 82304304 -19568865 - L1MC/D LINE L1 -594 5568 5494 203 283 20 61 chr13 82305121 82305220 -19567949 - MIR SINE MIR -57 205 111 1048 268 128 25 chr13 82305352 82305788 -19567381 - MLT1E LTR MaLR 0 593 113 230 277 0 24 chr13 82305807 82305890 -19567279 + L1M4 LINE L1 4939 5019 -1127 707 133 117 8 chr13 82305907 82306035 -19567134 + AluJo SINE Alu 1 142 -170 419 185 148 28 chr13 82306036 82306144 -19567025 - MLT1E LTR MaLR -472 121 1 1638 170 3 18 chr13 82306510 82306793 -19566376 + AluJo SINE Alu 4 282 -30 2448 84 0 0 chr13 82306819 82307127 -19566042 + AluSg SINE Alu 1 308 -2 653 222 67 26 chr13 82308203 82308397 -19564772 + L1MB7 LINE L1 5983 6184 0 864 182 7 0 chr13 82309543 82309686 -19563483 + AluJo SINE Alu 145 288 -24 1752 132 75 11 chr13 82309697 82309977 -19563192 + AluSx SINE Alu 1 298 -14 1239 196 0 9 chr13 82310663 82310882 -19562287 - AluJo SINE Alu -20 292 76 21 0 0 0 chr13 82311637 82311658 -19561511 + AT_rich Low_complexity Low_complexity 1 21 0 280 299 46 148 chr13 82312369 82312673 -19560496 - L2 LINE L2 -14 3258 2986 2108 152 33 55 chr13 82312835 82313115 -19560054 - L1MD1 LINE L1 -83 6159 5889 574 189 23 53 chr13 82313115 82313247 -19559922 - FLAM_A SINE Alu -5 128 1 2108 152 33 55 chr13 82313247 82313386 -19559783 - L1MD1 LINE L1 -353 5889 5749 1865 74 4 0 chr13 82313386 82313615 -19559554 + AluSp SINE Alu 63 292 -21 1421 185 39 53 chr13 82313616 82313950 -19559219 - L1MDa LINE L1 -6189 351 21 2188 109 13 0 chr13 82313950 82314253 -19558916 - L1PA8 LINE L1 -2 6170 5864 1421 185 39 53 chr13 82314253 82314274 -19558895 - L1MDa LINE L1 -6519 21 1 240 192 169 31 chr13 82315540 82315670 -19557499 - L1ME4a LINE L1 -34 6087 5940 261 0 0 0 chr13 82315689 82315718 -19557451 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr13 82315717 82315737 -19557432 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 839 102 8 0 chr13 82315987 82316115 -19557054 + (TA)n Simple_repeat Simple_repeat 1 129 0 2028 123 0 0 chr13 82316909 82317186 -19555983 - AluSx SINE Alu -8 304 28 295 230 230 10 chr13 82317851 82317951 -19555218 + L2 LINE L2 3191 3312 -1 2283 90 0 23 chr13 82318042 82318343 -19554826 - AluSg SINE Alu -16 294 1 3864 163 16 28 chr13 82318360 82319033 -19554136 - L1MB2 LINE L1 -2 6169 5504 2000 122 0 48 chr13 82319033 82319345 -19553824 - AluSx SINE Alu -15 297 1 3864 163 16 28 chr13 82319345 82319378 -19553791 - L1MB2 LINE L1 -667 5504 5472 657 273 78 17 chr13 82319548 82319779 -19553390 - L2 LINE L2 -595 2719 2475 7493 54 22 37 chr13 82320636 82321920 -19551249 - L1PA7 LINE L1 -1 6153 4873 189 0 0 0 chr13 82321931 82321952 -19551217 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2037 105 111 22 chr13 82322565 82322880 -19550289 - MER61A LTR ERV1 0 343 1 2846 200 48 6 chr13 82323070 82323609 -19549560 - MER68 LTR ERV1 0 562 1 642 109 210 58 chr13 82323653 82323791 -19549378 + AluJb SINE Alu 137 295 -17 2240 90 3 26 chr13 82324278 82324589 -19548580 - AluSg SINE Alu -6 304 1 753 142 125 0 chr13 82326508 82326628 -19546541 - AluJo SINE Alu -176 136 2 266 224 0 0 chr13 82327593 82327651 -19545518 - L1ME2 LINE L1 -169 5995 5938 6331 73 86 17 chr13 82327980 82329056 -19544113 - L1PA13 LINE L1 -6 6157 5031 1965 100 97 0 chr13 82332309 82332588 -19540581 - AluY SINE Alu -5 306 1 1741 181 13 3 chr13 82333931 82334230 -19538939 - AluJo SINE Alu -10 302 1 227 341 0 0 chr13 82334384 82334469 -19538700 + L2 LINE L2 2487 2571 -743 185 145 97 65 chr13 82335360 82335422 -19537747 - MIR SINE MIR -77 185 122 197 196 22 22 chr13 82338618 82338664 -19534505 - MIR SINE MIR -111 151 106 189 0 0 0 chr13 82338774 82338795 -19534374 + (T)n Simple_repeat Simple_repeat 1 21 0 777 161 179 12 chr13 82338833 82338995 -19534174 - MER5A DNA MER1_type 0 189 1 415 237 46 98 chr13 82339195 82339389 -19533780 + L1MA9 LINE L1 6091 6274 -38 989 324 57 49 chr13 82340692 82340911 -19532258 + L2 LINE L2 991 1207 -2107 1792 167 3 22 chr13 82340911 82341228 -19531941 - AluJo SINE Alu -1 311 1 989 324 57 49 chr13 82341228 82341620 -19531549 + L2 LINE L2 1207 1607 -1707 384 74 4 0 chr13 82341625 82341678 -19531491 - MSTD LTR MaLR -13 383 324 240 262 202 0 chr13 82342476 82342560 -19530609 - L2 LINE L2 -4 3268 3168 395 122 49 49 chr13 82342780 82342862 -19530307 - L1PA16 LINE L1 0 6166 6085 2576 103 86 39 chr13 82342862 82343219 -19529950 + MSTA LTR MaLR 1 381 -47 2203 98 0 29 chr13 82343219 82343526 -19529643 + AluSg1 SINE Alu 1 298 -11 2576 103 86 39 chr13 82343526 82343577 -19529592 + MSTA LTR MaLR 381 428 0 9734 150 44 11 chr13 82343577 82345175 -19527994 + MSTA-int LTR MaLR 1 1651 0 621 72 12 0 chr13 82345175 82345258 -19527911 + MSTA LTR MaLR 1 84 -344 5054 198 55 25 chr13 82345266 82345541 -19527628 - L1P5 LINE L1 -558 5598 5333 2397 85 0 0 chr13 82345541 82345835 -19527334 - AluY SINE Alu -17 294 1 5054 198 55 25 chr13 82345835 82347133 -19526036 - L1P5 LINE L1 -823 5333 3962 321 161 0 16 chr13 82347155 82347217 -19525952 + L1 LINE L1 4519 4579 -1567 8456 194 31 25 chr13 82347229 82348094 -19525075 - L1 LINE L1 -1374 4772 3914 1650 156 50 0 chr13 82348094 82348376 -19524793 - AluSx SINE Alu -16 296 1 8456 194 31 25 chr13 82348376 82348495 -19524674 - L1 LINE L1 -2232 3914 3797 381 22 0 0 chr13 82348495 82348541 -19524628 + (TG)n Simple_repeat Simple_repeat 1 46 0 8456 194 31 25 chr13 82348541 82349554 -19523615 - L1 LINE L1 -2349 3797 2761 7249 67 10 45 chr13 82349559 82351689 -19521480 - SVA Other Other -520 1386 2 252 0 0 0 chr13 82351694 82351722 -19521447 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 1307 265 13 5 chr13 82351724 82352098 -19521071 - L1 LINE L1 -3372 2774 2398 2344 82 0 0 chr13 82352398 82352690 -19520479 - AluY SINE Alu -15 296 5 22 35 0 0 chr13 82354169 82354198 -19518971 + AT_rich Low_complexity Low_complexity 1 29 0 5706 219 105 33 chr13 82356107 82356322 -19516847 - L1PA15-16 LINE L1 -3736 3113 2915 1721 68 0 0 chr13 82356322 82356528 -19516641 - AluY SINE Alu -18 293 88 5706 219 105 33 chr13 82356528 82358043 -19515126 - L1PA15-16 LINE L1 -3934 2915 1268 294 324 91 55 chr13 82358254 82358645 -19514524 - L2 LINE L2 -244 3028 2623 225 252 200 30 chr13 82359206 82359341 -19513828 + MIR SINE MIR 78 235 -27 1527 168 71 20 chr13 82359388 82359685 -19513484 - AluJb SINE Alu 0 312 1 665 212 0 0 chr13 82359704 82359817 -19513352 - FLAM_A SINE Alu -17 116 4 715 226 105 5 chr13 82359824 82360014 -19513155 - MER34C LTR ERV1 -373 212 4 255 197 0 56 chr13 82360702 82360773 -19512396 + MER3 DNA MER1_type 2 68 -141 1715 193 149 31 chr13 82360773 82361296 -19511873 + MER34C LTR ERV1 1 585 0 372 156 65 0 chr13 82361296 82361372 -19511797 + MER3 DNA MER1_type 72 152 -57 331 259 92 23 chr13 82361465 82361596 -19511573 - L1MC4 LINE L1 -19 8023 7884 495 221 77 55 chr13 82361684 82361865 -19511304 - L1ME2 LINE L1 -15 6149 5965 1764 155 73 42 chr13 82362003 82362357 -19510812 + MLT1A1 LTR MaLR 1 365 0 2681 230 28 12 chr13 82362592 82363235 -19509934 + MER82 DNA MER2_type 1 653 0 3356 279 62 38 chr13 82363235 82364422 -19508747 - HERVL LTR ERVL -330 5434 4210 2281 113 0 0 chr13 82364422 82364722 -19508447 - AluSx SINE Alu -12 300 1 3356 279 62 38 chr13 82364722 82364877 -19508292 - HERVL LTR ERVL -1554 4210 4060 1807 154 3 41 chr13 82365091 82365409 -19507760 - AluJo SINE Alu -6 306 1 258 246 14 0 chr13 82365498 82365567 -19507602 - HERVL LTR ERVL -4378 1276 1207 24 67 0 0 chr13 82365584 82365629 -19507540 + AT_rich Low_complexity Low_complexity 1 45 0 277 281 12 12 chr13 82365630 82365712 -19507457 - HERVL LTR ERVL -4561 1203 1122 862 206 0 28 chr13 82365716 82365896 -19507273 - MER58B DNA MER1_type 0 341 167 430 325 62 29 chr13 82365909 82366481 -19506688 - HERVL LTR ERVL -4639 1125 462 2217 130 0 32 chr13 82366547 82366892 -19506277 - MER1B DNA MER1_type 0 337 4 272 237 17 51 chr13 82367207 82367325 -19505844 - LTR41 LTR ERVL -11 762 649 516 264 54 6 chr13 82367733 82367900 -19505269 - LTR41 LTR ERVL -595 178 4 1139 280 83 30 chr13 82367977 82368437 -19504732 + L2 LINE L2 2815 3298 -15 25 31 0 0 chr13 82368719 82368751 -19504418 + AT_rich Low_complexity Low_complexity 1 32 0 31 76 0 0 chr13 82368967 82369033 -19504136 + AT_rich Low_complexity Low_complexity 1 66 0 2571 42 0 19 chr13 82369199 82369509 -19503660 - AluY SINE Alu -7 304 1 1384 180 75 56 chr13 82369795 82370100 -19503069 - AluJo SINE Alu 0 312 2 1898 160 3 13 chr13 82370247 82370560 -19502609 - AluJb SINE Alu -2 310 1 1923 156 7 10 chr13 82370787 82371094 -19502075 + AluSx SINE Alu 1 306 -6 667 236 139 3 chr13 82371184 82371472 -19501697 + L1M4 LINE L1 2385 2711 -3435 623 223 99 109 chr13 82371462 82371938 -19501231 + L1M4 LINE L1 3672 4142 -2004 * 2127 115 20 13 chr13 82371938 82372242 -19500927 - AluSx SINE Alu -6 306 1 429 216 3 50 chr13 82372254 82372389 -19500780 - L1M4 LINE L1 -1828 4318 4187 234 186 0 0 chr13 82372390 82372433 -19500736 + THE1C LTR MaLR 66 108 -247 2073 113 3 3 chr13 82372455 82372765 -19500404 + THE1C LTR MaLR 66 375 0 933 203 176 20 chr13 82372789 82373232 -19499937 + L1M4 LINE L1 4157 4668 -1478 621 150 100 0 chr13 82373854 82373954 -19499215 + FRAM SINE Alu 36 145 -31 747 161 0 63 chr13 82374681 82374824 -19498345 + FLAM_C SINE Alu 7 140 -3 1673 146 6 91 chr13 82374826 82375156 -19498013 + AluSx SINE Alu 1 302 -10 2380 187 49 56 chr13 82375191 82375887 -19497282 - LTR1 LTR ERV1 0 785 95 2598 189 14 16 chr13 82375987 82376483 -19496686 - MER21B LTR ERV1 -135 728 234 999 252 59 28 chr13 82376488 82376778 -19496391 - MER21B LTR ERV1 -564 299 1 986 143 63 0 chr13 82377015 82377190 -19495979 + MER2 DNA MER2_type 160 345 0 208 237 53 0 chr13 82377967 82377997 -19495172 + T-rich Low_complexity Low_complexity 5 32 -52 3643 156 27 24 chr13 82377997 82378749 -19494420 - L1MB3 LINE L1 -2 6181 5428 208 237 53 0 chr13 82378749 82378794 -19494375 + T-rich Low_complexity Low_complexity 32 84 0 519 114 0 0 chr13 82378806 82378894 -19494275 - L1MB3 LINE L1 -743 5440 5353 1137 146 21 47 chr13 82379595 82379787 -19493382 + AluJo SINE Alu 1 187 -125 693 168 30 15 chr13 82379787 82379918 -19493251 + AluJb SINE Alu 148 280 -32 21 0 0 0 chr13 82379918 82379939 -19493230 + GC_rich Low_complexity Low_complexity 1 21 0 2346 90 0 7 chr13 82380847 82381147 -19492022 + AluSg1 SINE Alu 1 298 -11 2150 125 64 9 chr13 82381740 82382085 -19491084 - THE1B LTR MaLR 0 364 1 277 139 25 25 chr13 82382634 82382713 -19490456 + LTR1 LTR ERV1 1 79 -706 350 297 45 9 chr13 82382905 82383016 -19490153 - HAL1 LINE L1 -1206 1301 1187 4552 184 40 14 chr13 82383019 82384771 -19488398 - L1MB2 LINE L1 -1 6170 4369 237 282 48 51 chr13 82384781 82385153 -19488016 - HAL1 LINE L1 -1319 1188 818 2241 73 4 0 chr13 82385399 82385671 -19487498 + AluSp SINE Alu 1 273 -40 369 276 159 33 chr13 82385886 82386100 -19487069 - HAL1b LINE L1 -417 931 691 300 273 0 23 chr13 82386151 82386239 -19486930 + L1MC4 LINE L1 6621 6706 -1336 445 271 76 40 chr13 82386246 82386471 -19486698 + L1MB8 LINE L1 2676 2908 -3238 1881 174 23 0 chr13 82386552 82386857 -19486312 + AluSx SINE Alu 1 312 0 362 292 53 66 chr13 82387050 82387276 -19485893 + L1MB8 LINE L1 3589 3811 -2335 4706 181 43 8 chr13 82387286 82389263 -19483906 - L1PB2 LINE L1 -2 6149 4108 1660 221 54 0 chr13 82389279 82389741 -19483428 - L1PB2 LINE L1 -2787 3359 2873 230 245 0 0 chr13 82389849 82389898 -19483271 + CT-rich Low_complexity Low_complexity 1 49 0 2432 49 0 3 chr13 82389965 82390285 -19482884 + AluY SINE Alu 1 319 0 271 295 36 89 chr13 82390974 82391086 -19482083 - L2 LINE L2 -31 3241 3136 24 32 0 0 chr13 82391426 82391457 -19481712 + AT_rich Low_complexity Low_complexity 1 31 0 1943 122 11 7 chr13 82391688 82391975 -19481194 + AluSx SINE Alu 1 288 -24 338 252 35 52 chr13 82392398 82392513 -19480656 - MER5B DNA MER1_type -64 114 2 233 288 23 45 chr13 82392527 82392659 -19480510 - L3 LINE CR1 -58 1519 1391 199 262 95 24 chr13 82395269 82395353 -19477816 - L2 LINE L2 -1 3312 3223 541 223 38 65 chr13 82395600 82395784 -19477385 + MER21B LTR ERV1 576 754 -109 2051 199 57 2 chr13 82395828 82396335 -19476834 + L1MB8 LINE L1 4550 5084 -1062 9019 115 58 13 chr13 82396337 82397854 -19475315 - Tigger2 DNA MER2_type 0 2718 1134 5405 123 121 11 chr13 82399070 82400073 -19473096 - Tigger2 DNA MER2_type -1605 1113 1 2118 190 42 26 chr13 82400076 82400994 -19472175 + L1MB8 LINE L1 5088 6168 -10 762 262 64 17 chr13 82400997 82401402 -19471767 + L1ME1 LINE L1 1853 2276 -4120 936 223 89 7 chr13 82401405 82401674 -19471495 - MER58B DNA MER1_type -4 337 47 391 265 90 0 chr13 82401746 82401912 -19471257 + L1ME1 LINE L1 2262 2442 -3773 1673 151 87 65 chr13 82401925 82402217 -19470952 + MSTA LTR MaLR 4 309 -119 647 157 8 8 chr13 82402217 82402338 -19470831 + L1MB8 LINE L1 6040 6160 -18 1673 151 87 65 chr13 82402338 82402461 -19470708 + MSTA LTR MaLR 309 428 0 8120 185 18 1 chr13 82402461 82403949 -19469220 + MSTA-int LTR MaLR 1 1513 -138 895 87 0 0 chr13 82403943 82404070 -19469099 - MST-int LTR MaLR -12 1639 1513 * 2426 232 103 41 chr13 82404083 82405142 -19468027 + L1ME1 LINE L1 3696 4688 -1715 2263 143 58 31 chr13 82405142 82405556 -19467613 + MSTA LTR MaLR 2 426 -2 2426 232 103 41 chr13 82405556 82406204 -19466965 + L1ME1 LINE L1 4688 5294 -1109 2144 134 0 3 chr13 82406204 82406495 -19466674 + AluSx SINE Alu 1 290 -22 2426 232 103 41 chr13 82406495 82406544 -19466625 + L1ME1 LINE L1 5294 6390 -13 1675 168 14 0 chr13 82406668 82406953 -19466216 + AluJo SINE Alu 7 295 -17 302 269 119 60 chr13 82407148 82407349 -19465820 + L1MEc LINE L1 2823 3035 -3180 1492 182 24 20 chr13 82407390 82407687 -19465482 + AluJo SINE Alu 1 298 -14 6076 158 59 15 chr13 82408357 82410820 -19462349 - L1PBa LINE L1 -3742 2461 1 259 188 0 0 chr13 82410820 82410868 -19462301 + L1MEc LINE L1 3865 3912 -2303 26 50 0 0 chr13 82410885 82410925 -19462244 + AT_rich Low_complexity Low_complexity 1 40 0 385 315 84 36 chr13 82410960 82411213 -19461956 + L1MEc LINE L1 3951 4190 -2025 186 43 0 0 chr13 82411213 82411236 -19461933 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 385 315 84 36 chr13 82411236 82411482 -19461687 + L1MEc LINE L1 4190 4474 -1741 287 268 72 42 chr13 82411690 82411955 -19461214 + L1MEc LINE L1 4702 4974 -1241 246 221 136 0 chr13 82411980 82412061 -19461108 + L1M LINE L1 5386 5474 -750 1597 165 57 75 chr13 82412093 82412480 -19460689 + MLT1B LTR MaLR 11 390 0 3029 133 21 4 chr13 82412523 82412988 -19460181 + LTR26B LTR ERV1 3 475 -56 18022 63 5 0 chr13 82412988 82416140 -19457029 + L1PA5 LINE L1 2956 6154 0 335 322 154 17 chr13 82416287 82416638 -19456531 - L1MC4a LINE L1 -1966 5842 5444 221 163 20 0 chr13 82416678 82416727 -19456442 + CT-rich Low_complexity Low_complexity 3 52 0 526 257 37 37 chr13 82418492 82418679 -19454490 - L2 LINE L2 -747 2567 2381 23 0 0 0 chr13 82419011 82419034 -19454135 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr13 82419066 82419092 -19454077 + (TG)n Simple_repeat Simple_repeat 1 26 0 839 223 43 9 chr13 82419120 82419331 -19453838 + MER20 DNA MER1_type 2 219 0 1324 171 25 7 chr13 82419790 82420064 -19453105 - MER33 DNA MER1_type -45 279 1 2103 123 3 3 chr13 82420888 82421196 -19451973 - AluSq SINE Alu -5 308 1 2653 210 27 13 chr13 82421224 82421772 -19451397 + MER68 LTR ERV1 3 558 -4 341 352 74 6 chr13 82422284 82422446 -19450723 + L2 LINE L2 8 180 -3134 2660 219 39 11 chr13 82422762 82423478 -19449691 + L1M4 LINE L1 4092 4827 -1319 304 188 0 29 chr13 82423478 82423547 -19449622 + L1MC1 LINE L1 6257 6323 -10 1334 79 0 0 chr13 82423722 82423886 -19449283 + AluY SINE Alu 136 299 -12 28 61 0 0 chr13 82423905 82423954 -19449215 + AT_rich Low_complexity Low_complexity 1 49 0 861 120 0 0 chr13 82424012 82424137 -19449032 - L1PA15 LINE L1 -13 6152 6028 34 0 0 0 chr13 82424150 82424184 -19448985 + AT_rich Low_complexity Low_complexity 1 34 0 527 218 47 57 chr13 82424185 82424378 -19448791 - L1M4 LINE L1 -1827 4319 4129 318 226 113 16 chr13 82424379 82424503 -19448666 - L1M4 LINE L1 -3034 3112 2977 783 347 73 21 chr13 82424602 82425213 -19447956 + MERVL LTR ERVL 3838 4486 -1092 1232 200 122 27 chr13 82425214 82425509 -19447660 + LTR16A LTR ERVL 128 450 0 532 320 74 38 chr13 82425528 82426053 -19447116 - L2 LINE L2 -920 2394 1851 686 314 163 29 chr13 82426510 82426959 -19446210 + L2 LINE L2 2804 3312 -1 2672 80 13 8 chr13 82427237 82427610 -19445559 + THE1C LTR MaLR 1 375 0 857 287 22 0 chr13 82428317 82428540 -19444629 + MIR SINE MIR 35 262 0 25 31 0 0 chr13 82429247 82429279 -19443890 + AT_rich Low_complexity Low_complexity 1 32 0 1269 180 4 64 chr13 82429354 82429621 -19443548 + AluJo SINE Alu 40 290 -22 769 158 0 82 chr13 82429823 82429994 -19443175 - FRAM SINE Alu 0 40 1 1202 189 12 0 chr13 82430183 82430427 -19442742 - L1M4 LINE L1 -579 5605 5359 6883 69 4 9 chr13 82430551 82431721 -19441448 + L1PA8 LINE L1 5000 6165 -7 180 0 0 0 chr13 82431726 82431746 -19441423 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 2385 197 29 29 chr13 82431753 82431827 -19441342 - L1M4 LINE L1 -798 5348 5275 980 102 0 182 chr13 82431827 82432063 -19441106 - 7SK RNA RNA 0 193 1 2385 197 29 29 chr13 82432063 82432571 -19440598 - L1M4 LINE L1 -870 5276 4766 2359 215 50 62 chr13 82432579 82432987 -19440182 - L1ME2 LINE L1 -65 6099 5688 1081 285 124 26 chr13 82432987 82433527 -19439642 + MLT1E LTR MaLR 1 593 0 2359 215 50 62 chr13 82433527 82434444 -19438725 - L1ME2 LINE L1 -476 5688 4762 2347 101 0 9 chr13 82434444 82434760 -19438409 - AluSq SINE Alu 0 313 1 2359 215 50 62 chr13 82434760 82435682 -19437487 - L1ME2 LINE L1 -1402 4762 3760 5661 85 26 14 chr13 82435682 82436957 -19436212 - SVA Other Other -954 1380 12 2359 215 50 62 chr13 82436957 82437525 -19435644 - L1ME2 LINE L1 -2404 3760 3187 231 36 0 0 chr13 82437549 82437577 -19435592 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 6165 173 31 19 chr13 82437631 82439429 -19433740 - L1MC1 LINE L1 0 6333 4512 1415 171 74 34 chr13 82489944 82490294 -19382875 + THE1B LTR MaLR 1 364 0 189 0 0 0 chr13 82490574 82490595 -19382574 + (A)n Simple_repeat Simple_repeat 1 21 0 743 279 165 34 chr13 82491788 82492175 -19380994 - MLT1E LTR MaLR -139 454 17 1559 179 61 10 chr13 82493264 82493389 -19379780 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr13 82493389 82493410 -19379759 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1559 179 61 10 chr13 82493410 82493581 -19379588 + AluJb SINE Alu 118 312 0 525 285 207 0 chr13 82494515 82494708 -19378461 - MIR SINE MIR -2 260 28 195 376 83 23 chr13 82495070 82495203 -19377966 + MIR3 SINE MIR 5 145 -63 1046 209 24 40 chr13 82495321 82495574 -19377595 - AluJo SINE Alu -18 294 46 301 226 36 12 chr13 82495981 82496065 -19377104 + MARNA DNA Mariner 270 355 -231 455 276 194 24 chr13 82496293 82496623 -19376546 + MLT1J LTR MaLR 111 496 -15 1266 223 27 60 chr13 82496770 82497173 -19375996 - MLT1B LTR MaLR 0 390 1 646 224 62 19 chr13 82500420 82500695 -19372474 + MLT2F LTR ERVL 8 342 -321 322 328 66 80 chr13 82503274 82503637 -19369532 - L3 LINE CR1 -1 1576 1219 * 464 330 152 5 chr13 82503604 82503801 -19369368 - MIR SINE MIR 0 262 37 1345 294 135 8 chr13 82504332 82505049 -19368120 + L2 LINE L2 2228 3031 -282 1488 168 90 70 chr13 82505060 82505448 -19367721 + MSTD LTR MaLR 1 396 0 1273 245 14 50 chr13 82505452 82505811 -19367358 + MLT1A1 LTR MaLR 20 365 0 336 311 101 42 chr13 82505833 82505952 -19367217 + L2 LINE L2 3173 3298 -15 21 0 0 0 chr13 82506843 82506864 -19366305 + AT_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr13 82507485 82507544 -19365625 + AT_rich Low_complexity Low_complexity 1 59 0 328 233 259 9 chr13 82507991 82508107 -19365062 - MER5A DNA MER1_type 0 189 45 681 238 111 0 chr13 82508107 82508279 -19364890 + MER3 DNA MER1_type 19 209 0 1002 314 85 30 chr13 82508292 82508821 -19364348 + L2 LINE L2 835 1392 -1922 349 238 164 57 chr13 82508859 82508981 -19364188 + L2 LINE L2 3136 3270 -2 699 224 107 0 chr13 82510047 82510243 -19362926 - L1ME3A LINE L1 -233 5937 5721 616 292 102 20 chr13 82510249 82510793 -19362376 - L1ME3A LINE L1 -543 5619 5042 * 3218 24 0 1 chr13 82510784 82511581 -19361588 - L1PA2 LINE L1 0 6155 5360 6409 32 1 1 chr13 82511756 82513189 -19359980 - L1PA3 LINE L1 -86 6069 4638 736 243 169 13 chr13 82513189 82513567 -19359602 - L1ME3A LINE L1 -1094 5052 4616 236 272 64 12 chr13 82513581 82513754 -19359415 - L1ME3A LINE L1 -1742 4404 4223 1002 259 56 10 chr13 82513765 82514175 -19358994 + L1M4c LINE L1 1140 1568 -4816 8810 144 45 21 chr13 82514189 82515867 -19357302 + L1PA6 LINE L1 11 1728 -4418 4241 14 1 2 chr13 82515860 82516602 -19356567 - L1PA2 LINE L1 -537 5618 4877 * 4515 25 0 0 chr13 82516602 82517159 -19356010 + L1PA2 LINE L1 5615 6171 0 14497 73 5 1 chr13 82517173 82519254 -19353915 + L1PA6 LINE L1 1692 3779 -2367 23 0 0 0 chr13 82519440 82519463 -19353706 + AT_rich Low_complexity Low_complexity 1 23 0 11912 60 10 18 chr13 82519496 82521816 -19351353 + L1PA6 LINE L1 3841 6153 -1 1713 142 6 84 chr13 82522056 82522388 -19350781 + AluSx SINE Alu 5 310 -2 767 297 71 76 chr13 82522561 82523038 -19350131 + L2 LINE L2 2778 3252 -61 9387 210 35 43 chr13 82523150 82526252 -19346917 + L1PA11 LINE L1 833 4744 -2840 10935 143 35 9 chr13 82526256 82528921 -19344248 + L1PA11 LINE L1 4900 7612 0 454 204 18 25 chr13 82528956 82529085 -19344084 + L1PA15-16 LINE L1 6 123 -6740 4526 125 29 44 chr13 82529139 82530025 -19343144 + L1PA16 LINE L1 5280 6152 -14 1754 168 3 16 chr13 82530099 82530435 -19342734 + AluJb SINE Alu 1 312 0 1637 187 0 25 chr13 82530635 82530918 -19342251 - AluJo SINE Alu -36 276 1 1425 122 5 0 chr13 82530925 82531121 -19342048 - AluSg/x SINE Alu -9 303 107 296 183 169 35 chr13 82531371 82531513 -19341656 + L1ME4a LINE L1 5959 6119 -2 288 0 0 0 chr13 82531953 82531985 -19341184 + (T)n Simple_repeat Simple_repeat 1 32 0 1764 249 56 23 chr13 82532090 82532604 -19340565 + MLT1F LTR MaLR 2 532 -10 21 36 0 0 chr13 82533359 82533387 -19339782 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 82533417 82533442 -19339727 + AT_rich Low_complexity Low_complexity 1 25 0 210 295 0 0 chr13 82533477 82533538 -19339631 + (CATA)n Simple_repeat Simple_repeat 2 62 0 487 333 82 38 chr13 82533770 82534037 -19339132 - L3 LINE CR1 -1 1576 1298 210 71 0 0 chr13 82534040 82534068 -19339101 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 217 343 0 0 chr13 82534249 82534316 -19338853 - L3 LINE CR1 -530 1047 981 201 74 0 0 chr13 82535022 82535049 -19338120 + (T)n Simple_repeat Simple_repeat 1 27 0 186 118 0 0 chr13 82535186 82535220 -19337949 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 8286 72 16 131 chr13 82535221 82536754 -19336415 - SVA Other Other -3 1383 26 27 0 0 0 chr13 82536820 82536847 -19336322 + AT_rich Low_complexity Low_complexity 1 27 0 4949 168 39 8 chr13 82536850 82538241 -19334928 - L1PA16 LINE L1 -9 6157 4724 3446 141 213 16 chr13 82538245 82538932 -19334237 - LTR12 LTR ERV1 0 826 5 564 159 89 13 chr13 82538948 82539105 -19334064 - pTR5 LTR ERV1 -1094 1344 1176 7465 219 32 79 chr13 82539638 82540771 -19332398 - L1PA15-16 LINE L1 -804 6045 4860 375 23 0 0 chr13 82540771 82540815 -19332354 + (TG)n Simple_repeat Simple_repeat 1 44 0 7465 219 32 79 chr13 82540815 82542134 -19331035 - L1PA15-16 LINE L1 -1989 4860 3750 2324 75 7 10 chr13 82542134 82542439 -19330730 - AluY SINE Alu -5 306 3 7465 219 32 79 chr13 82542439 82542910 -19330259 - L1PA15-16 LINE L1 -3099 3750 3258 953 132 13 0 chr13 82542915 82543074 -19330095 + L1PA15-16 LINE L1 2774 2934 -3915 1131 188 16 0 chr13 82543074 82543266 -19329903 - AluJo SINE Alu -117 195 1 248 0 105 0 chr13 82543267 82543305 -19329864 - L1PA15-16 LINE L1 -4700 2149 2108 2996 154 71 10 chr13 82543305 82544292 -19328877 - L1PA15-16 LINE L1 -3584 3265 2141 1755 184 3 7 chr13 82544292 82544585 -19328584 - AluJb SINE Alu -20 292 1 2996 154 71 10 chr13 82544585 82544718 -19328451 - L1PA15-16 LINE L1 -4708 2141 2017 3154 151 23 0 chr13 82544718 82545241 -19327928 - L1PA15-16 LINE L1 -5277 1572 1038 822 231 43 0 chr13 82545716 82545902 -19327267 - MER58A DNA MER1_type -1 223 30 341 315 172 68 chr13 82545982 82546321 -19326848 - L2 LINE L2 0 3272 2879 2341 128 31 14 chr13 82546321 82546679 -19326490 + THE1B LTR MaLR 1 364 0 341 315 172 68 chr13 82546679 82546764 -19326405 - L2 LINE L2 -393 2879 2804 670 260 28 11 chr13 82546858 82547039 -19326130 - MIR SINE MIR -78 184 1 575 316 72 49 chr13 82547137 82547802 -19325367 + L2 LINE L2 2386 3064 -208 413 281 97 49 chr13 82547814 82547999 -19325170 - L1PA15-16 LINE L1 -1132 2078 1885 2187 122 50 10 chr13 82548005 82548406 -19324763 - L1MA8 LINE L1 -13 6278 5862 1687 184 13 10 chr13 82548901 82549210 -19323959 - AluJb SINE Alu 0 312 3 905 158 0 0 chr13 82549217 82549350 -19323819 - FLAM_C SINE Alu -10 133 1 25 0 0 0 chr13 82550154 82550179 -19322990 + AT_rich Low_complexity Low_complexity 1 25 0 318 286 41 83 chr13 82550518 82550680 -19322489 - L1ME LINE L1 -350 5812 5645 468 0 0 0 chr13 82550680 82550732 -19322437 + (TG)n Simple_repeat Simple_repeat 2 53 0 318 286 41 83 chr13 82550732 82550962 -19322207 - L1ME LINE L1 -517 5645 5414 283 298 167 22 chr13 82551094 82551812 -19321357 - L1ME LINE L1 -832 5314 4493 305 250 40 30 chr13 82551932 82552032 -19321137 + L2 LINE L2 3193 3293 -20 540 295 101 38 chr13 82552054 82552814 -19320355 - L1ME LINE L1 -1794 4352 3545 351 211 168 40 chr13 82552817 82552992 -19320177 + MLT1G LTR MaLR 1 183 -372 373 252 105 35 chr13 82553288 82553431 -19319738 - L1ME LINE L1 -3525 2621 2469 1646 178 17 17 chr13 82554831 82555129 -19318040 - AluJo SINE Alu -14 298 1 202 304 25 38 chr13 82555234 82555313 -19317856 + MIR SINE MIR 74 151 -111 1953 104 7 28 chr13 82555907 82556195 -19316974 - AluSg SINE Alu -10 300 19 315 0 0 0 chr13 82556676 82556711 -19316458 + (CA)n Simple_repeat Simple_repeat 2 36 0 2575 94 33 0 chr13 82557256 82557619 -19315550 + THE1C LTR MaLR 1 375 0 187 341 47 0 chr13 82557647 82557732 -19315437 + MIR SINE MIR 62 150 -112 23 0 0 0 chr13 82558305 82558328 -19314841 + AT_rich Low_complexity Low_complexity 1 23 0 606 294 90 49 chr13 82558975 82559471 -19313698 + L1MEc LINE L1 787 1230 -4988 831 196 122 0 chr13 82559612 82559857 -19313312 + L1M4 LINE L1 1194 1468 -5074 1990 108 8 0 chr13 82560266 82560524 -19312645 + AluSg SINE Alu 32 291 -19 213 235 0 0 chr13 82560649 82560700 -19312469 + A-rich Low_complexity Low_complexity 1 51 0 1226 137 0 5 chr13 82560793 82560990 -19312179 + MER2 DNA MER2_type 8 203 -142 365 240 0 0 chr13 82561016 82561091 -19312078 + MER2 DNA MER2_type 268 342 -3 325 315 109 6 chr13 82562143 82562308 -19310861 + L1MC4 LINE L1 6760 6941 -1101 1325 141 87 25 chr13 82562447 82562712 -19310457 + MER46B DNA MER2_type 1 157 -79 3322 113 13 58 chr13 82562712 82563352 -19309817 + MER4B LTR ERV1 1 779 0 620 82 24 0 chr13 82563354 82563439 -19309730 + MER46B DNA MER2_type 150 236 0 559 237 74 0 chr13 82564357 82564492 -19308677 + MIR SINE MIR 105 249 -13 1106 173 10 0 chr13 82564555 82564752 -19308417 + L1MB4 LINE L1 4677 4875 -1271 * 4981 145 39 19 chr13 82564749 82565797 -19307372 + L1MB4 LINE L1 5108 6179 -1 2383 81 0 0 chr13 82566613 82566908 -19306261 - AluY SINE Alu -16 295 1 14128 170 67 13 chr13 82567071 82571230 -19301939 + L1MA4A LINE L1 1 3935 -3070 2243 110 51 23 chr13 82571230 82571584 -19301585 - THE1B LTR MaLR 0 364 1 14128 170 67 13 chr13 82571584 82573119 -19300050 + L1MA4A LINE L1 3935 5386 -1619 7674 21 4 2 chr13 82573119 82574214 -19298955 + L1PA3 LINE L1 5059 6155 0 14128 170 67 13 chr13 82574214 82575169 -19298000 + L1MA4A LINE L1 5386 7005 0 329 271 57 23 chr13 82575173 82575350 -19297819 - L1ME4a LINE L1 -1 6120 5938 2129 112 3 7 chr13 82575614 82575909 -19297260 - AluSc SINE Alu -15 294 1 2284 103 0 3 chr13 82575927 82576228 -19296941 - AluSc SINE Alu -9 300 1 1879 196 97 5 chr13 82576857 82577249 -19295920 + MSTA LTR MaLR 1 428 0 1229 246 121 74 chr13 82577309 82577887 -19295282 + MER77 LTR ERV1 1 605 0 231 369 23 39 chr13 82577909 82578039 -19295130 - L2 LINE L2 -211 3061 2934 22 35 0 0 chr13 82579155 82579184 -19293985 + AT_rich Low_complexity Low_complexity 1 29 0 636 223 79 0 chr13 82581183 82581322 -19291847 - MER58A DNA MER1_type -1 223 74 2221 107 3 0 chr13 82581344 82581642 -19291527 + AluSq SINE Alu 1 299 -14 30 0 0 0 chr13 82581642 82581672 -19291497 + AT_rich Low_complexity Low_complexity 1 30 0 325 254 0 0 chr13 82581675 82581738 -19291431 - MER58A DNA MER1_type -161 63 1 308 232 43 0 chr13 82582022 82582091 -19291078 - L2 LINE L2 -2 3270 3199 538 267 123 21 chr13 82582153 82582389 -19290780 + MIR SINE MIR 3 262 0 2096 124 3 0 chr13 82583257 82583547 -19289622 + AluSx SINE Alu 3 293 -19 450 350 64 26 chr13 82583774 82584040 -19289129 + L1MEd LINE L1 345 620 -5499 4311 140 60 9 chr13 82584276 82585074 -19288095 - L1MA4 LINE L1 -1 6299 5461 6657 64 34 2 chr13 82585074 82586659 -19286510 + L1PA8 LINE L1 4556 6171 -1 1984 179 55 0 chr13 82586677 82587191 -19285978 - L1MA4 LINE L1 -743 5403 4944 251 236 34 22 chr13 82587919 82588008 -19285161 - L1MC4a LINE L1 -1802 6006 5917 230 264 28 14 chr13 82588066 82588138 -19285031 - L1MC4a LINE L1 -2369 5439 5367 5572 90 66 8 chr13 82588153 82589065 -19284104 + L1PB1 LINE L1 5187 6149 -2 1915 88 0 8 chr13 82589207 82589456 -19283713 + AluSx SINE Alu 39 285 -27 2683 26 0 0 chr13 82589638 82589944 -19283225 + AluY SINE Alu 1 306 -5 2730 139 41 67 chr13 82590624 82591179 -19281990 + LTR9 LTR ERV1 1 541 -71 283 291 13 0 chr13 82591512 82591591 -19281578 + MLT1J LTR MaLR 95 174 -337 206 179 0 0 chr13 82591769 82591808 -19281361 - MIR SINE MIR -35 227 189 1568 210 3 3 chr13 82592793 82593083 -19280086 - AluJo SINE Alu -22 290 1 24 32 0 0 chr13 82593201 82593232 -19279937 + AT_rich Low_complexity Low_complexity 1 31 0 183 358 78 25 chr13 82595535 82595739 -19277430 + L2 LINE L2 2260 2474 -840 1115 286 131 13 chr13 82596273 82596724 -19276445 + LTR33 LTR ERVL 5 508 -13 795 199 20 25 chr13 82597458 82597659 -19275510 + L1MB8 LINE L1 5952 6151 -27 5568 58 7 1 chr13 82599189 82599894 -19273275 - L1PA7 LINE L1 -11 6143 5435 1778 88 7 51 chr13 82600365 82600639 -19272530 + AluSg SINE Alu 37 298 -12 1898 201 26 0 chr13 82600646 82601074 -19272095 - L1MA4 LINE L1 -1490 4656 4218 * 5273 107 55 2 chr13 82601059 82601861 -19271308 + L1PA16 LINE L1 5323 6166 0 22 35 0 0 chr13 82602252 82602281 -19270888 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr13 82602851 82602899 -19270270 + AT_rich Low_complexity Low_complexity 1 48 0 35 41 0 0 chr13 82602952 82603001 -19270168 + AT_rich Low_complexity Low_complexity 1 49 0 362 239 79 27 chr13 82603579 82603745 -19269424 + L1ME4a LINE L1 5239 5414 -751 232 320 68 27 chr13 82603835 82604054 -19269115 + L1ME4a LINE L1 5452 5679 -442 305 264 113 56 chr13 82604152 82604383 -19268786 + L1ME4a LINE L1 5876 6119 -2 1950 147 20 0 chr13 82604672 82604964 -19268205 + AluSx SINE Alu 1 298 -14 250 210 123 0 chr13 82605601 82605682 -19267487 - L2 LINE L2 0 3313 3223 2142 119 10 3 chr13 82605819 82606114 -19267055 + AluSg SINE Alu 1 297 -13 238 362 85 27 chr13 82606263 82606487 -19266682 - L2 LINE L2 -414 2900 2664 28 48 0 0 chr13 82607981 82608023 -19265146 + AT_rich Low_complexity Low_complexity 1 42 0 3516 42 2 20 chr13 82609547 82610003 -19263166 + LTR7 LTR ERV1 1 448 -2 2026 159 40 5 chr13 82610224 82610596 -19262573 + Tigger2 DNA MER2_type 2334 2718 0 377 255 192 39 chr13 82610783 82610991 -19262178 + L2 LINE L2 3072 3311 -2 1968 208 49 25 chr13 82611228 82611675 -19261494 + MER70A LTR ERVL 1 458 -14 1264 280 72 33 chr13 82611834 82612349 -19260820 + MLT1H LTR MaLR 1 535 -14 24 53 0 0 chr13 82612630 82612668 -19260501 + AT_rich Low_complexity Low_complexity 1 38 0 844 130 0 19 chr13 82612668 82612829 -19260340 - L1MA4 LINE L1 -1 6299 6142 707 157 48 24 chr13 82612833 82612999 -19260170 + L1MA4 LINE L1 5949 6118 -182 * 1036 0 0 88 chr13 82612997 82613144 -19260025 - L1PA3 LINE L1 -25 6130 5997 234 194 51 61 chr13 82613734 82613832 -19259337 + L1MCc LINE L1 258 354 -6069 185 305 63 32 chr13 82614209 82614304 -19258865 - L2 LINE L2 -2849 465 368 698 260 45 35 chr13 82614448 82614797 -19258372 + L1MCc LINE L1 1292 1642 -4931 2168 124 3 0 chr13 82614797 82615095 -19258074 + AluSx SINE Alu 1 299 -13 698 260 45 35 chr13 82615095 82615139 -19258030 + L1MCc LINE L1 1642 1684 -4889 606 158 47 47 chr13 82615238 82615365 -19257804 + L1 LINE L1 356 482 -4846 * 4451 160 32 18 chr13 82615350 82616281 -19256888 + L1 LINE L1 3784 4727 -1601 2297 169 24 14 chr13 82616281 82616772 -19256397 + L1 LINE L1 4970 5465 -863 6247 144 39 17 chr13 82616773 82617971 -19255198 + L1P4 LINE L1 4089 5343 -822 2279 104 0 0 chr13 82617971 82618269 -19254900 + AluSc SINE Alu 1 298 -11 6247 144 39 17 chr13 82618269 82618747 -19254422 + L1P4 LINE L1 5343 5809 -356 973 56 32 0 chr13 82618747 82618872 -19254297 + L1PA10 LINE L1 6037 6165 -3 535 262 29 6 chr13 82618884 82619056 -19254113 + L1ME LINE L1 4025 4200 -1946 * 2611 222 61 4 chr13 82619047 82619839 -19253330 + L1ME LINE L1 4465 5301 -845 1302 232 12 6 chr13 82619848 82620171 -19252998 + L1ME LINE L1 5371 5695 -471 523 315 61 13 chr13 82620246 82620785 -19252384 + L1M4 LINE L1 4484 5048 -1098 265 263 32 0 chr13 82620948 82621043 -19252126 + L1M LINE L1 5257 5354 -767 21 71 0 0 chr13 82621056 82621098 -19252071 + AT_rich Low_complexity Low_complexity 1 42 0 189 254 91 0 chr13 82621124 82621179 -19251990 - L2 LINE L2 -60 3253 3194 207 100 0 0 chr13 82621186 82621216 -19251953 + (TG)n Simple_repeat Simple_repeat 1 30 0 291 312 137 10 chr13 82622410 82622615 -19250554 - MIR SINE MIR -6 256 26 2482 75 0 0 chr13 82623442 82623747 -19249422 + AluY SINE Alu 1 305 -6 24 0 0 0 chr13 82624023 82624047 -19249122 + AT_rich Low_complexity Low_complexity 1 24 0 6123 206 52 4 chr13 82624388 82625741 -19247428 + MSTB-int LTR MaLR 234 1651 0 366 143 0 0 chr13 82625741 82625797 -19247372 + MSTB LTR MaLR 1 56 -370 1349 148 14 5 chr13 82625800 82626023 -19247146 + MSTB LTR MaLR 202 426 0 1913 181 0 0 chr13 82626683 82626992 -19246177 + AluJo SINE Alu 4 312 0 23 0 0 0 chr13 82627396 82627419 -19245750 + AT_rich Low_complexity Low_complexity 1 23 0 1489 232 39 20 chr13 82627593 82628002 -19245167 - LTR40c LTR ERVL 0 465 49 2124 254 35 34 chr13 82628018 82628733 -19244436 - HERVL40 LTR ERVL -2134 3396 2681 1729 179 52 57 chr13 82629274 82629732 -19243437 - LTR40c LTR ERVL -9 456 1 400 314 103 18 chr13 82629913 82630244 -19242925 + L1M4 LINE L1 3590 3948 -2198 507 327 45 39 chr13 82630267 82630600 -19242569 + L1M4 LINE L1 4500 4834 -1312 23 68 0 0 chr13 82630961 82631005 -19242164 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr13 82631395 82631419 -19241750 + AT_rich Low_complexity Low_complexity 1 24 0 710 235 76 24 chr13 82633408 82633659 -19239510 + LTR40b LTR ERVL 199 462 0 698 302 43 4 chr13 82633673 82633908 -19239261 + HERVL40 LTR ERVL 19 262 -5268 633 192 8 8 chr13 82634052 82634182 -19238987 + LTR40b LTR ERVL 333 462 0 368 319 81 59 chr13 82634182 82634593 -19238576 + L1MEc LINE L1 962 1430 -1146 185 0 40 0 chr13 82634615 82634640 -19238529 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 31 26 0 0 chr13 82634982 82635020 -19238149 + AT_rich Low_complexity Low_complexity 1 38 0 2828 22 0 0 chr13 82635103 82635417 -19237752 - AluYb8 SINE Alu -4 314 1 22 56 0 0 chr13 82635540 82635576 -19237593 + AT_rich Low_complexity Low_complexity 1 36 0 649 327 108 37 chr13 82636245 82636734 -19236435 + L2 LINE L2 1864 2387 -927 2020 87 3 24 chr13 82637309 82637597 -19235572 + AluY SINE Alu 1 282 -29 2056 122 3 0 chr13 82637727 82638021 -19235148 - AluSx SINE Alu -11 301 7 1387 180 0 8 chr13 82639412 82639679 -19233490 + L1MC1 LINE L1 6069 6333 0 1165 199 42 63 chr13 82639774 82640060 -19233109 - AluJo SINE Alu -30 282 3 1123 123 22 0 chr13 82641513 82641692 -19231477 + L1PA11 LINE L1 4421 4603 -1543 7322 175 59 75 chr13 82641692 82643460 -19229709 + MER52A LTR ERV1 1 1740 -15 6241 97 15 2 chr13 82643487 82645020 -19228149 + L1PA11 LINE L1 4600 6173 -1 796 220 31 0 chr13 82645201 82645360 -19227809 - FRAM SINE Alu -13 163 1 1927 129 4 4 chr13 82645658 82645937 -19227232 - AluSg SINE Alu -31 279 1 362 293 91 40 chr13 82646416 82646614 -19226555 + L3 LINE CR1 1323 1530 -47 472 242 17 8 chr13 82646928 82647048 -19226121 - MLT1C-int LTR MaLR -587 784 664 374 197 0 0 chr13 82647049 82647120 -19226049 - MLT1C LTR MaLR -50 417 347 4870 208 36 69 chr13 82647182 82648596 -19224573 - MLT1C-int LTR MaLR -4 1367 1 1282 203 130 28 chr13 82648596 82649020 -19224149 - MLT1C LTR MaLR 0 467 1 317 119 50 188 chr13 82649018 82649119 -19224050 - Tigger5 DNA MER2_type 0 2323 2237 * 288 200 0 0 chr13 82649129 82649184 -19223985 - Tigger5 DNA MER2_type -2268 55 1 12773 171 73 9 chr13 82649449 82654921 -19218248 + L1PB1 LINE L1 37 5853 -1009 7377 118 1 2 chr13 82654922 82656036 -19217133 + L1PA5 LINE L1 1 1113 -5033 24190 52 9 1 chr13 82656042 82659927 -19213242 + L1PA5 LINE L1 2254 6152 -2 6065 77 30 5 chr13 82659932 82660921 -19212248 + L1PB1 LINE L1 5857 6867 0 458 208 51 84 chr13 82662234 82662372 -19210797 + MER5B DNA MER1_type 3 135 -43 2797 10 0 0 chr13 82662372 82662675 -19210494 + AluYa5 SINE Alu 1 303 -8 458 208 51 84 chr13 82662675 82662714 -19210455 + MER5B DNA MER1_type 135 174 -4 483 204 159 51 chr13 82662726 82662883 -19210286 - MER5A DNA MER1_type -2 187 14 340 237 237 0 chr13 82662900 82663039 -19210130 + MER5A DNA MER1_type 12 183 -6 852 192 0 6 chr13 82663083 82663255 -19209914 + AluJb SINE Alu 132 302 -10 231 361 36 0 chr13 82664227 82664310 -19208859 + MIR3 SINE MIR 111 196 -12 24 0 0 0 chr13 82664676 82664700 -19208469 + AT_rich Low_complexity Low_complexity 1 24 0 2044 134 3 0 chr13 82664827 82665119 -19208050 + AluSx SINE Alu 3 295 -17 183 156 0 0 chr13 82665133 82665165 -19208004 + T-rich Low_complexity Low_complexity 1 32 0 315 86 69 0 chr13 82665220 82665278 -19207891 - AluJb SINE Alu 0 302 241 1039 201 0 6 chr13 82665280 82665459 -19207710 - AluJb SINE Alu -132 180 3 23 0 0 0 chr13 82665803 82665826 -19207343 + AT_rich Low_complexity Low_complexity 1 23 0 4371 129 42 3 chr13 82665902 82666565 -19206604 - L1MB2 LINE L1 -2 6169 5473 369 0 0 0 chr13 82666565 82666606 -19206563 + (TG)n Simple_repeat Simple_repeat 2 42 0 4371 129 42 3 chr13 82666606 82666673 -19206496 - L1MB2 LINE L1 -698 5473 5410 230 311 0 0 chr13 82666673 82666763 -19206406 + MARNA DNA Mariner 143 232 -354 344 285 118 36 chr13 82666855 82667076 -19206093 - MLT1J LTR MaLR -49 462 224 1339 160 29 75 chr13 82668980 82669286 -19203883 + AluJo SINE Alu 1 292 -20 39 22 0 0 chr13 82669290 82669336 -19203833 + AT_rich Low_complexity Low_complexity 1 46 0 355 252 0 16 chr13 82670162 82670289 -19202880 - L1ME3A LINE L1 -3 6167 6043 2014 163 0 22 chr13 82670618 82671028 -19202141 + L1MA4A LINE L1 4660 5060 -1086 1147 161 8 12 chr13 82670999 82671242 -19201927 + L1MA4A LINE L1 5869 6110 -193 * 283 142 18 142 chr13 82671259 82671372 -19201797 + L1MA4A LINE L1 6182 6280 -23 373 235 121 8 chr13 82671431 82671563 -19201606 - L2 LINE L2 -841 2473 2327 258 290 195 57 chr13 82671565 82671862 -19201307 - L2 LINE L2 -738 2576 2239 278 236 76 49 chr13 82672606 82672741 -19200428 + L1MC4 LINE L1 6955 7096 -946 1367 212 124 0 chr13 82672741 82673015 -19200154 + AluJo SINE Alu 5 312 0 449 108 0 14 chr13 82673024 82673098 -19200071 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 2336 195 32 14 chr13 82673604 82674102 -19199067 - MLT2B2 LTR ERVL -8 507 1 2398 103 0 3 chr13 82675522 82675824 -19197345 + AluSc SINE Alu 1 301 -8 24 32 0 0 chr13 82676130 82676161 -19197008 + AT_rich Low_complexity Low_complexity 1 31 0 1415 222 65 48 chr13 82676284 82676470 -19196699 + MLT1C LTR MaLR 1 182 -285 2207 105 47 41 chr13 82676470 82676832 -19196337 - THE1B LTR MaLR 0 364 1 1415 222 65 48 chr13 82676832 82677104 -19196065 + MLT1C LTR MaLR 182 467 0 287 115 0 39 chr13 82677623 82677675 -19195494 - MIR SINE MIR -130 132 83 1909 147 10 19 chr13 82677858 82678170 -19194999 - AluJb SINE Alu 0 312 4 1566 174 50 18 chr13 82678418 82678700 -19194469 + AluJo SINE Alu 1 291 -21 181 346 198 6 chr13 82679240 82679402 -19193767 - MIR SINE MIR -49 213 21 26 30 0 0 chr13 82679730 82679763 -19193406 + AT_rich Low_complexity Low_complexity 1 33 0 216 198 9 52 chr13 82680769 82680885 -19192284 + CT-rich Low_complexity Low_complexity 2 112 0 330 26 0 0 chr13 82681222 82681261 -19191908 + (TG)n Simple_repeat Simple_repeat 2 40 0 250 358 97 55 chr13 82681360 82681762 -19191407 + L2 LINE L2 2853 3271 -1 1566 177 22 18 chr13 82681982 82682259 -19190910 - AluJo SINE Alu -15 297 20 382 269 18 6 chr13 82682640 82682807 -19190362 + L1ME3A LINE L1 5810 5978 -192 2225 103 0 0 chr13 82682931 82683340 -19189829 - AluSx SINE Alu 0 409 1 1774 169 36 15 chr13 82683443 82683596 -19189573 + MER2 DNA MER2_type 1 149 -195 2204 102 0 3 chr13 82683596 82683890 -19189279 - AluSq SINE Alu -20 293 1 1774 169 36 15 chr13 82683890 82684073 -19189096 + MER2 DNA MER2_type 149 344 0 1045 303 137 37 chr13 82684970 82685971 -19187198 - L2 LINE L2 0 3313 2217 217 350 57 24 chr13 82686095 82686218 -19186951 - L2 LINE L2 0 3272 3146 22 0 0 0 chr13 82686247 82686269 -19186900 + AT_rich Low_complexity Low_complexity 1 22 0 800 207 53 0 chr13 82686496 82686665 -19186504 - MER5B DNA MER1_type 0 178 1 1513 254 47 12 chr13 82687394 82687902 -19185267 - MER90 LTR ERV1 -20 594 69 1396 245 10 21 chr13 82688307 82688688 -19184481 - MLT1E2 LTR MaLR -5 617 212 551 178 0 0 chr13 82688700 82688790 -19184379 - 5S rRNA rRNA -31 90 1 338 192 85 12 chr13 82688812 82689001 -19184168 - MLT1E1 LTR MaLR -396 258 1 456 35 0 0 chr13 82689291 82689349 -19183820 + (TG)n Simple_repeat Simple_repeat 2 59 0 227 114 23 0 chr13 82690393 82690437 -19182732 + (TA)n Simple_repeat Simple_repeat 2 46 0 230 259 0 19 chr13 82690704 82690758 -19182411 - L2 LINE L2 -9 3263 3211 333 352 73 9 chr13 82691249 82691468 -19181701 + L2 LINE L2 2394 2626 -688 191 152 0 0 chr13 82691484 82691517 -19181652 - L2 LINE L2 -4 3309 3277 * 681 306 32 66 chr13 82691511 82691920 -19181249 + L2 LINE L2 2197 2591 -723 279 207 86 0 chr13 82691891 82691949 -19181220 + MIR SINE MIR 31 93 -169 * 1637 80 0 0 chr13 82692377 82692589 -19180580 - AluY SINE Alu -2 309 98 1189 33 13 13 chr13 82692828 82692979 -19180190 - AluY SINE Alu -9 302 152 859 242 19 11 chr13 82693060 82693320 -19179849 + MER20B DNA MER1_type 522 783 0 348 327 57 6 chr13 82693826 82693985 -19179184 + L2 LINE L2 2564 2730 -584 280 355 40 44 chr13 82694057 82694308 -19178861 + L2 LINE L2 2895 3144 -169 1287 251 123 17 chr13 82694315 82694729 -19178440 + L2 LINE L2 2402 2859 -455 378 304 22 43 chr13 82694718 82694856 -19178313 + L2 LINE L2 3138 3272 0 * 365 374 32 0 chr13 82694854 82695009 -19178160 + L2 LINE L2 3153 3312 -1 * 25 0 0 0 chr13 82695924 82695949 -19177220 + AT_rich Low_complexity Low_complexity 1 25 0 327 250 17 43 chr13 82696806 82696922 -19176247 + MIR SINE MIR 100 212 -50 416 278 127 87 chr13 82698756 82699286 -19173883 + L1M2 LINE L1 510 750 -6099 182 37 37 0 chr13 82699286 82699313 -19173856 + (CCG)n Simple_repeat Simple_repeat 3 30 0 416 278 127 87 chr13 82699313 82699595 -19173574 + L1M2 LINE L1 750 1019 -5830 183 129 0 0 chr13 82699636 82699667 -19173502 + (GGA)n Simple_repeat Simple_repeat 1 31 0 215 304 80 36 chr13 82700724 82700836 -19172333 - L2 LINE L2 -4 3309 3193 21 0 0 0 chr13 82702052 82702073 -19171096 + AT_rich Low_complexity Low_complexity 1 21 0 783 266 79 5 chr13 82702543 82702757 -19170412 + MIR SINE MIR 6 235 -27 317 264 94 9 chr13 82703486 82703592 -19169577 - MIR3 SINE MIR -5 203 89 192 174 22 87 chr13 82703692 82703738 -19169431 - L2 LINE L2 -25 3247 3205 292 311 8 25 chr13 82704169 82704291 -19168878 - MLT1K LTR MaLR -283 305 186 378 0 0 0 chr13 82704342 82704384 -19168785 + (TG)n Simple_repeat Simple_repeat 2 43 0 1027 274 107 11 chr13 82704568 82704922 -19168247 + L3 LINE CR1 1153 1540 -37 812 153 0 8 chr13 82707019 82707150 -19166019 + FLAM_C SINE Alu 1 130 -3 727 278 74 13 chr13 82707160 82707390 -19165779 + MIR SINE MIR 19 262 0 2123 98 7 0 chr13 82707424 82707723 -19165446 - AluSx SINE Alu 0 305 5 495 279 138 69 chr13 82708831 82709282 -19163887 - LTR33 LTR ERVL -14 507 26 1217 123 0 0 chr13 82710819 82710990 -19162179 + AluSg/x SINE Alu 135 305 -7 23 0 0 0 chr13 82711504 82711527 -19161642 + AT_rich Low_complexity Low_complexity 1 23 0 181 381 0 0 chr13 82711776 82711839 -19161330 + MIR SINE MIR 20 82 -180 * 404 338 46 20 chr13 82711828 82711979 -19161190 + L2 LINE L2 3158 3312 -1 2145 224 35 12 chr13 82712928 82713437 -19159732 + MER74A LTR ERVL 25 545 -13 222 118 0 0 chr13 82713550 82713584 -19159585 + (A)n Simple_repeat Simple_repeat 1 34 0 2188 131 3 0 chr13 82713854 82714159 -19159010 + AluSx SINE Alu 1 306 -6 886 159 211 109 chr13 82714624 82715027 -19158142 + MLT1F1 LTR MaLR 2 445 -122 1902 296 83 22 chr13 82715137 82715944 -19157225 - L2 LINE L2 -1808 1506 651 5655 139 30 43 chr13 82716117 82717203 -19155966 + MER11C LTR ERVK 1 1071 0 362 179 0 0 chr13 82717438 82717494 -19155675 + (TCTCTG)n Simple_repeat Simple_repeat 2 57 0 231 355 53 0 chr13 82718357 82718433 -19154736 - L2 LINE L2 -39 3233 3154 2440 121 15 88 chr13 82718532 82718932 -19154237 - MSTB LTR MaLR -4 422 57 2225 67 42 0 chr13 82718932 82719215 -19153954 - AluY SINE Alu -16 295 1 2440 121 15 88 chr13 82719215 82719269 -19153900 - MSTB LTR MaLR -369 57 1 26 0 0 0 chr13 82719566 82719592 -19153577 + AT_rich Low_complexity Low_complexity 1 26 0 366 336 164 13 chr13 82720189 82720639 -19152530 + L1ME4a LINE L1 4329 4846 -1300 1504 177 64 0 chr13 82720942 82721062 -19152107 + AluJo SINE Alu 1 112 -190 453 50 0 0 chr13 82721062 82721122 -19152047 + (TA)n Simple_repeat Simple_repeat 2 61 0 1504 177 64 0 chr13 82721122 82721286 -19151883 + AluJo SINE Alu 112 302 0 530 233 57 79 chr13 82722191 82722470 -19150699 + L1ME4a LINE L1 5562 5834 -287 1579 192 7 3 chr13 82722652 82722954 -19150215 - AluJo SINE Alu -9 303 1 884 232 37 15 chr13 82722982 82723215 -19149954 + MIR SINE MIR 25 260 -2 5560 82 8 4 chr13 82723776 82724570 -19148599 - L1PA8A LINE L1 0 6131 5335 215 321 25 25 chr13 82725083 82725164 -19148005 + L2 LINE L2 3187 3267 -5 312 273 45 36 chr13 82725475 82725585 -19147584 + MIR SINE MIR 64 174 -88 2079 166 7 42 chr13 82726300 82726377 -19146792 + MLT1B LTR MaLR 1 79 -311 2145 127 0 7 chr13 82726377 82726676 -19146493 - AluSx SINE Alu -15 297 1 2079 166 7 42 chr13 82726676 82727002 -19146167 + MLT1B LTR MaLR 79 390 0 288 0 0 0 chr13 82727150 82727182 -19145987 + (TA)n Simple_repeat Simple_repeat 2 33 0 2927 6 0 0 chr13 82727182 82727498 -19145671 - AluYb8 SINE Alu -2 316 1 30 77 0 0 chr13 82727695 82727760 -19145409 + AT_rich Low_complexity Low_complexity 1 65 0 321 184 250 37 chr13 82728165 82728301 -19144868 + MIR SINE MIR 29 193 -69 1619 205 89 19 chr13 82728412 82728841 -19144328 + MLT1C LTR MaLR 7 465 -2 306 292 119 31 chr13 82728856 82729116 -19144053 + L1ME4a LINE L1 5802 6084 -37 635 264 115 21 chr13 82730505 82730601 -19142568 - MIR SINE MIR -3 259 173 420 20 0 0 chr13 82730601 82730650 -19142519 + (TTA)n Simple_repeat Simple_repeat 2 50 0 635 264 115 21 chr13 82730650 82730788 -19142381 - MIR SINE MIR -89 173 3 26 0 0 0 chr13 82734196 82734222 -19138947 + AT_rich Low_complexity Low_complexity 1 26 0 1672 40 0 0 chr13 82734279 82734478 -19138691 - L1PA3 LINE L1 0 6155 5957 186 341 123 50 chr13 82734640 82734890 -19138279 + L2 LINE L2 931 1161 -2153 2156 138 24 32 chr13 82734890 82735266 -19137903 - MER83C LTR ERV1 0 373 1 186 341 123 50 chr13 82735266 82735513 -19137656 + L2 LINE L2 1161 1464 -1850 500 104 57 34 chr13 82735584 82735683 -19137486 + MLT1A2 LTR MaLR 5 122 -243 1932 153 24 32 chr13 82735738 82736078 -19137091 - MER1B DNA MER1_type 0 337 1 277 316 127 32 chr13 82736425 82736583 -19136586 + MER5A DNA MER1_type 1 173 -16 2025 127 10 16 chr13 82737337 82737651 -19135518 - AluSq SINE Alu -1 312 1 1313 217 92 14 chr13 82738134 82738493 -19134676 + MLT1B LTR MaLR 1 387 -3 1624 129 47 28 chr13 82739929 82740246 -19132923 - L1MA8 LINE L1 -10 6281 5959 3690 132 19 82 chr13 82740457 82740620 -19132549 - L1MA8 LINE L1 -337 5954 5782 459 0 0 0 chr13 82740620 82740671 -19132498 + (CA)n Simple_repeat Simple_repeat 2 52 0 3690 132 19 82 chr13 82740671 82740897 -19132272 - L1MA8 LINE L1 -509 5782 5543 2025 151 3 7 chr13 82740897 82741201 -19131968 - AluJb SINE Alu -5 307 5 3690 132 19 82 chr13 82741201 82741640 -19131529 - L1MA8 LINE L1 -748 5543 5078 2129 102 14 0 chr13 82741640 82741925 -19131244 - AluSq SINE Alu -24 289 1 2069 124 0 0 chr13 82741932 82742222 -19130947 - AluSx SINE Alu -22 290 1 3690 132 19 82 chr13 82742222 82742679 -19130490 - L1MA8 LINE L1 -1219 5072 4753 257 304 12 12 chr13 82742839 82743011 -19130158 + T-rich Low_complexity Low_complexity 1 172 0 509 258 137 16 chr13 82743905 82744095 -19129074 + L3 LINE CR1 1146 1358 -219 2034 139 109 26 chr13 82744202 82744625 -19128544 - LTR32 LTR ERVL 0 471 14 2022 160 74 20 chr13 82744737 82745143 -19128026 - MSTA LTR MaLR 0 428 1 238 203 135 0 chr13 82745145 82745179 -19127990 - L1MA9 LINE L1 -44 6268 6240 351 0 0 0 chr13 82745179 82745218 -19127951 + (TA)n Simple_repeat Simple_repeat 1 39 0 238 203 135 0 chr13 82745218 82745257 -19127912 - L1MA9 LINE L1 -72 6240 6185 760 229 94 12 chr13 82745618 82745650 -19127519 - L1ME2 LINE L1 -140 6024 5996 195 42 0 0 chr13 82745650 82745674 -19127495 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 760 229 94 12 chr13 82745674 82745886 -19127283 - L1ME2 LINE L1 -168 5996 5760 2149 101 4 0 chr13 82745935 82746213 -19126956 - AluSg SINE Alu -14 296 18 214 167 9 37 chr13 82746861 82746969 -19126200 + (TA)n Simple_repeat Simple_repeat 1 105 0 369 259 26 17 chr13 82746977 82746988 -19126181 - L1MA10 LINE L1 -42 6292 6282 240 320 23 46 chr13 82746988 82747163 -19126006 - L1ME1 LINE L1 -44 6122 5952 418 238 155 22 chr13 82747196 82747519 -19125650 + L1ME4a LINE L1 5756 6121 0 252 0 0 0 chr13 82748041 82748069 -19125100 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr13 82748103 82748131 -19125038 + AT_rich Low_complexity Low_complexity 1 28 0 10407 145 36 17 chr13 82748400 82749848 -19123321 + Tigger2 DNA MER2_type 1 1496 -1222 1505 125 108 39 chr13 82749848 82750127 -19123042 - AluJo SINE Alu -14 298 1 10407 145 36 17 chr13 82750127 82750614 -19122555 + Tigger2 DNA MER2_type 1496 1972 -746 32 43 0 0 chr13 82751870 82751916 -19121253 + AT_rich Low_complexity Low_complexity 1 46 0 191 103 26 0 chr13 82751925 82751964 -19121205 + (TA)n Simple_repeat Simple_repeat 2 41 0 194 358 238 7 chr13 82752528 82752679 -19120490 + MIR SINE MIR 2 187 -75 34 0 0 0 chr13 82753107 82753141 -19120028 + AT_rich Low_complexity Low_complexity 1 34 0 1714 39 4 31 chr13 82753141 82753370 -19119799 - L1PA4 LINE L1 -2 6153 5931 269 366 155 24 chr13 82753471 82753722 -19119447 + L2 LINE L2 2601 2884 -430 27 0 0 0 chr13 82754732 82754759 -19118410 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chr13 82754825 82754882 -19118287 + AT_rich Low_complexity Low_complexity 1 57 0 4730 179 42 1 chr13 82755074 82756326 -19116843 - L1P4 LINE L1 -634 5532 4234 5199 202 37 19 chr13 82756426 82757419 -19115750 - L1 LINE L1 -987 5159 4131 745 29 19 19 chr13 82757419 82757523 -19115646 + (TTTC)n Simple_repeat Simple_repeat 3 106 0 5199 202 37 19 chr13 82757523 82757921 -19115248 - L1 LINE L1 -2015 4131 3742 282 303 34 11 chr13 82758097 82758186 -19114983 + L2 LINE L2 3168 3258 -14 222 250 0 0 chr13 82758187 82758235 -19114934 + (TA)n Simple_repeat Simple_repeat 2 49 0 338 287 101 43 chr13 82758254 82758463 -19114706 - L1MC4 LINE L1 -3 8039 7819 1281 225 18 11 chr13 82758596 82758876 -19114293 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr13 82758879 82758910 -19114259 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 311 266 54 54 chr13 82758921 82759199 -19113970 - L1MC5 LINE L1 -412 7549 7272 2530 62 54 5 chr13 82759563 82759936 -19113233 + LTR1 LTR ERV1 394 784 -1 2120 131 28 6 chr13 82759936 82760288 -19112881 + L1PA15 LINE L1 5801 6160 -5 243 266 156 0 chr13 82760379 82760507 -19112662 - L1MC4a LINE L1 -1467 6341 6194 2054 123 7 7 chr13 82760527 82760819 -19112350 - AluSx SINE Alu -16 296 5 3082 249 7 8 chr13 82760824 82761666 -19111503 - L1P LINE L1 -1491 4655 3815 947 126 0 7 chr13 82761796 82761947 -19111222 + L1PA6 LINE L1 5896 6045 -109 3552 105 39 39 chr13 82761963 82762104 -19111065 + L1PBa LINE L1 1890 2030 -4833 1845 158 0 0 chr13 82762104 82762376 -19110793 + AluSx SINE Alu 39 310 -2 2166 117 3 13 chr13 82762381 82762681 -19110488 + AluSx SINE Alu 1 297 -15 3552 105 39 39 chr13 82762681 82763201 -19109968 + L1PBa LINE L1 2033 2557 -4306 1955 142 3 3 chr13 82763915 82764225 -19108944 - AluJb SINE Alu -2 310 1 1237 176 118 16 chr13 82765847 82765919 -19107250 + AluJo SINE Alu 18 81 -231 1964 104 0 15 chr13 82765919 82766187 -19106982 - AluSg SINE Alu -46 264 1 1237 176 118 16 chr13 82766187 82766369 -19106800 + AluJo SINE Alu 81 298 -14 8488 29 1 1 chr13 82766469 82768178 -19104991 - L1PA4 LINE L1 -144 6011 4303 4760 138 48 25 chr13 82769093 82769450 -19103719 + MER6 DNA MER2_type 1 348 -517 279 0 0 0 chr13 82769450 82769481 -19103688 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 4760 138 48 25 chr13 82769481 82769968 -19103201 + MER6 DNA MER2_type 348 865 0 557 250 115 16 chr13 82771658 82771850 -19101319 - MER52A LTR ERV1 -449 1306 1096 * 696 183 99 165 chr13 82771841 82772175 -19100994 - LTR28 LTR ERV1 -785 970 1 2037 154 0 0 chr13 82772795 82773094 -19100075 + AluSx SINE Alu 2 300 -12 255 203 14 27 chr13 82773158 82773232 -19099937 + L1ME4a LINE L1 5970 6042 -79 1674 200 25 70 chr13 82773249 82773738 -19099431 - MLT1C LTR MaLR 0 467 1 2472 56 0 0 chr13 82773984 82774309 -19098860 - AluY SINE Alu 0 311 1 216 376 62 35 chr13 82774394 82774652 -19098517 + L2 LINE L2 2712 2976 -338 513 296 69 14 chr13 82775590 82775806 -19097363 + MIR SINE MIR 35 262 0 23 33 0 0 chr13 82775806 82775836 -19097333 + AT_rich Low_complexity Low_complexity 1 30 0 430 295 27 23 chr13 82776480 82776738 -19096431 + L1ME LINE L1 5521 5779 -342 315 317 120 6 chr13 82777537 82777704 -19095465 + L2 LINE L2 1875 2060 -1254 753 258 48 22 chr13 82777745 82777974 -19095195 - MIR SINE MIR -5 257 23 407 302 31 8 chr13 82778677 82778806 -19094363 + MIR SINE MIR 67 198 -64 1378 111 0 0 chr13 82780287 82780476 -19092693 + AluSg/x SINE Alu 117 305 -7 761 297 30 9 chr13 82781660 82781892 -19091277 + MIR SINE MIR 10 246 -16 238 313 53 69 chr13 82782396 82782527 -19090642 + MIR SINE MIR 85 213 -49 242 357 40 16 chr13 82782882 82783008 -19090161 - L2 LINE L2 -1 3312 3184 325 305 59 13 chr13 82783961 82784197 -19088972 + L1MEd LINE L1 907 1153 -4966 2551 65 0 0 chr13 82785153 82785459 -19087710 - AluY SINE Alu -5 306 1 1605 133 8 20 chr13 82786246 82786501 -19086668 + AluJo SINE Alu 45 296 -16 573 251 67 6 chr13 82786570 82786749 -19086420 + Charlie2a DNA MER1_type 232 421 -2441 957 199 35 19 chr13 82786757 82787018 -19086151 + Charlie2a DNA MER1_type 744 1008 -1854 307 203 42 59 chr13 82787021 82787139 -19086030 + Charlie2a DNA MER1_type 2745 2860 -2 639 287 59 34 chr13 82787433 82787754 -19085415 - MLT1I LTR MaLR -21 388 60 374 254 93 0 chr13 82787816 82787934 -19085235 - MER67D LTR ERV1 -1 513 385 818 153 14 56 chr13 82787952 82788142 -19085027 - FRAM SINE Alu 0 194 11 246 98 0 24 chr13 82788201 82788242 -19084927 - MER67C LTR ERV1 -321 389 350 946 154 0 0 chr13 82788499 82788642 -19084527 - FLAM_C SINE Alu 0 143 1 2625 97 8 5 chr13 82788677 82789049 -19084120 + THE1C LTR MaLR 1 373 -2 284 240 130 27 chr13 82789099 82789245 -19083924 + MIR SINE MIR 102 262 0 1654 166 46 0 chr13 82790354 82790638 -19082531 + AluJb SINE Alu 1 297 -15 827 169 18 24 chr13 82790702 82790868 -19082301 - L1PB4 LINE L1 -1 6155 5991 293 247 52 21 chr13 82791056 82791153 -19082016 - MIR3 SINE MIR -2 206 107 1918 137 10 0 chr13 82791502 82791795 -19081374 + 7SLRNA srpRNA srpRNA 21 316 -4 379 329 68 0 chr13 82792162 82792308 -19080861 - MIR SINE MIR -73 189 34 679 186 102 6 chr13 82793556 82793733 -19079436 - MER119 DNA MER1_type 0 583 390 502 152 29 9 chr13 82793871 82793976 -19079193 - MER119 DNA MER1_type -177 406 300 * 592 208 38 6 chr13 82793958 82794117 -19079052 - MER119 DNA MER1_type -118 465 302 * 1517 258 79 5 chr13 82794101 82794532 -19078637 - MER119 DNA MER1_type -118 465 3 604 274 64 34 chr13 82795039 82795305 -19077864 - L2 LINE L2 -3 3310 3037 364 284 32 0 chr13 82795300 82795395 -19077774 - MIR SINE MIR -91 171 74 * 216 0 0 0 chr13 82795756 82795780 -19077389 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr13 82795912 82795932 -19077237 + (TG)n Simple_repeat Simple_repeat 1 20 0 1036 135 94 75 chr13 82796209 82796475 -19076694 + L1PA14 LINE L1 5891 6161 0 718 251 47 63 chr13 82796477 82796966 -19076203 + L1MC5 LINE L1 7459 7939 -22 382 295 71 0 chr13 82798154 82798266 -19074903 - L2 LINE L2 0 3272 3153 2085 131 0 16 chr13 82798507 82798821 -19074348 - AluSx SINE Alu -3 309 1 192 77 0 0 chr13 82798870 82798896 -19074273 + (CA)n Simple_repeat Simple_repeat 2 27 0 711 259 52 21 chr13 82799316 82799509 -19073660 - MIR SINE MIR -17 245 47 205 167 42 21 chr13 82799536 82799584 -19073585 + CT-rich Low_complexity Low_complexity 3 51 0 200 325 97 26 chr13 82800731 82800845 -19072324 - MIR SINE MIR -66 142 21 1792 135 18 92 chr13 82802310 82802629 -19070540 + L1MB3 LINE L1 5821 6107 -76 2349 103 0 0 chr13 82802629 82802931 -19070238 + AluSc SINE Alu 1 302 -7 1792 135 18 92 chr13 82802931 82803003 -19070166 + L1MB3 LINE L1 6107 6183 0 526 311 90 43 chr13 82803291 82803821 -19069348 + L2 LINE L2 2470 3294 -19 207 223 43 85 chr13 82804193 82804287 -19068882 - MIR SINE MIR -51 211 122 271 250 9 9 chr13 82804881 82804993 -19068176 + (TA)n Simple_repeat Simple_repeat 1 112 0 559 266 126 14 chr13 82806195 82806409 -19066760 - MIR SINE MIR -4 258 21 764 156 0 30 chr13 82807204 82807339 -19065830 + FLAM_C SINE Alu 1 131 -12 340 253 120 33 chr13 82807378 82807528 -19065641 + MIR SINE MIR 88 250 -12 227 283 19 0 chr13 82807837 82807890 -19065279 - L2 LINE L2 -11 3302 3249 214 260 123 39 chr13 82807911 82808115 -19065054 + L2 LINE L2 2171 2391 -923 240 100 0 0 chr13 82808132 82808172 -19064997 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 824 283 197 26 chr13 82808174 82808601 -19064568 - L2 LINE L2 -7 3306 2807 456 372 98 3 chr13 82808668 82808964 -19064205 + L2 LINE L2 2438 2761 -553 360 357 110 63 chr13 82809012 82809393 -19063776 + L2 LINE L2 2874 3272 0 377 220 420 0 chr13 82809695 82809845 -19063324 + MIR SINE MIR 23 235 -27 1243 194 4 0 chr13 82809940 82810198 -19062971 - L1PA16 LINE L1 -17 6149 5891 860 164 32 64 chr13 82810198 82810240 -19062929 - L1PB4 LINE L1 -329 5827 5785 180 0 0 0 chr13 82810240 82810260 -19062909 + (TA)n Simple_repeat Simple_repeat 2 21 0 860 164 32 64 chr13 82810260 82810436 -19062733 - L1PB4 LINE L1 -371 5785 5616 21 36 0 0 chr13 82810466 82810494 -19062675 + AT_rich Low_complexity Low_complexity 1 28 0 272 264 56 48 chr13 82811626 82811751 -19061418 - MIR SINE MIR 0 262 137 1283 145 68 68 chr13 82812394 82812718 -19060451 - L1MA9 LINE L1 -64 6248 5925 535 274 12 37 chr13 82813652 82813816 -19059353 + MIR SINE MIR 97 256 -6 284 282 82 36 chr13 82814334 82814444 -19058725 - MIR SINE MIR -77 185 71 2362 71 96 0 chr13 82815008 82815332 -19057837 - THE1A LTR MaLR 0 355 1 8790 99 88 0 chr13 82815332 82816784 -19056385 - THE1A-int LTR MaLR 0 1580 1 2277 95 89 0 chr13 82816784 82817110 -19056059 - THE1A LTR MaLR 0 355 1 30 0 0 0 chr13 82817317 82817347 -19055822 + AT_rich Low_complexity Low_complexity 1 30 0 921 254 93 50 chr13 82818086 82818615 -19054554 + L2 LINE L2 2738 3272 -41 321 140 0 0 chr13 82820864 82820921 -19052248 + (CTCA)n Simple_repeat Simple_repeat 1 57 0 1936 191 3 8 chr13 82821020 82821386 -19051783 - MLT1A1 LTR MaLR -1 364 1 232 309 21 0 chr13 82821841 82821935 -19051234 + L1MC/D LINE L1 5721 5816 -1992 17303 148 10 34 chr13 82822044 82825880 -19047289 + L1PA11 LINE L1 2307 6170 -4 261 273 20 10 chr13 82826168 82826267 -19046902 - L1M3 LINE L1 -540 5794 5695 240 321 105 42 chr13 82827008 82827198 -19045971 - MIR3 SINE MIR -6 202 1 553 296 143 35 chr13 82827512 82827937 -19045232 + L2 LINE L2 2842 3312 -1 2113 152 0 13 chr13 82828432 82828767 -19044402 - AluSx SINE Alu 0 331 1 2045 130 3 3 chr13 82828807 82829092 -19044077 - AluSx SINE Alu -14 298 14 186 138 0 0 chr13 82830139 82830168 -19043001 + L2 LINE L2 3270 3298 -15 496 173 0 0 chr13 82830433 82830514 -19042655 + AluJ/FLAM SINE Alu 3 83 -229 489 132 0 0 chr13 82831401 82831477 -19041692 - AluS SINE Alu -13 298 223 375 108 0 31 chr13 82832070 82832135 -19041034 + THE1C LTR MaLR 1 63 -312 22 0 0 0 chr13 82832324 82832346 -19040823 + AT_rich Low_complexity Low_complexity 1 22 0 238 29 0 0 chr13 82832461 82832496 -19040673 - L1MA3 LINE L1 0 6305 6271 352 255 149 12 chr13 82833616 82833777 -19039392 + MIR SINE MIR 5 187 -75 668 267 138 9 chr13 82833847 82834072 -19039097 + MIR SINE MIR 9 262 0 265 279 118 46 chr13 82834125 82834362 -19038807 - L1ME4a LINE L1 -211 5910 5657 264 293 101 14 chr13 82835084 82835271 -19037898 - MIR SINE MIR -21 241 37 565 251 58 97 chr13 82835325 82835437 -19037732 - MIR SINE MIR -12 250 135 198 0 0 0 chr13 82835437 82835459 -19037710 + (TCCA)n Simple_repeat Simple_repeat 3 24 0 565 251 58 97 chr13 82835459 82835605 -19037564 - MIR SINE MIR -127 135 2 317 267 33 17 chr13 82835643 82835763 -19037406 + L1MCa LINE L1 1995 2116 -4310 484 266 0 0 chr13 82835785 82835879 -19037290 + L2 LINE L2 3220 3313 0 511 236 149 14 chr13 82836057 82836332 -19036837 - LTR33 LTR ERVL -207 314 3 681 185 49 0 chr13 82837072 82837234 -19035935 - L1MA8 LINE L1 -5 6286 6117 2415 80 0 3 chr13 82837554 82837855 -19035314 - AluSc SINE Alu -9 300 1 346 254 100 18 chr13 82837904 82838014 -19035155 - L2 LINE L2 -1 3312 3194 263 200 0 0 chr13 82838781 82838836 -19034333 + LTR33 LTR ERVL 465 519 -2 22 70 0 0 chr13 82838841 82838884 -19034285 + AT_rich Low_complexity Low_complexity 1 43 0 250 259 133 44 chr13 82839209 82839367 -19033802 + L2 LINE L2 3139 3310 -3 290 202 0 36 chr13 82841861 82841945 -19031224 + C-rich Low_complexity Low_complexity 3 83 0 1589 170 47 4 chr13 82842256 82842533 -19030636 - AluJb SINE Alu -20 292 4 2136 115 3 0 chr13 82844160 82844466 -19028703 + AluSp SINE Alu 1 307 0 1282 210 15 37 chr13 82845992 82846191 -19026978 - MER58B DNA MER1_type -2102 318 127 1850 142 3 27 chr13 82846191 82846487 -19026682 - AluSx SINE Alu -23 289 1 1282 210 15 37 chr13 82846487 82846611 -19026558 - MER58B DNA MER1_type -2293 127 2 418 308 228 50 chr13 82847188 82847250 -19025919 - L2 LINE L2 0 3272 3222 1593 223 11 29 chr13 82847250 82847627 -19025542 - MLT1A2 LTR MaLR -4 370 1 418 308 228 50 chr13 82847627 82848609 -19024560 - L2 LINE L2 -50 3222 2047 210 371 49 14 chr13 82848628 82848771 -19024398 - L2 LINE L2 -1557 1757 1610 399 210 30 50 chr13 82849152 82849241 -19023928 - MER5A DNA MER1_type -77 112 24 2078 148 135 5 chr13 82849241 82849620 -19023549 - MSTA LTR MaLR 0 428 1 198 349 0 0 chr13 82849860 82849923 -19023246 - L2 LINE L2 -2099 1215 1153 2233 91 47 0 chr13 82852049 82852345 -19020824 + AluSx SINE Alu 1 310 -2 2723 86 11 3 chr13 82852345 82852704 -19020465 - THE1B LTR MaLR 0 364 3 587 322 65 6 chr13 82852737 82853088 -19020081 + L1ME4a LINE L1 5517 5888 -233 317 284 87 27 chr13 82853499 82853682 -19019487 + L2 LINE L2 444 637 -2677 1540 236 73 59 chr13 82853731 82854277 -19018892 - MLT2B3 LTR ERVL 0 554 1 1950 300 148 51 chr13 82854373 82854783 -19018386 + L2 LINE L2 970 1339 -1975 2099 124 68 11 chr13 82854783 82855138 -19018031 - THE1C LTR MaLR 0 375 1 1950 300 148 51 chr13 82855138 82856307 -19016862 + L2 LINE L2 1339 2701 -613 567 277 68 61 chr13 82856426 82856736 -19016433 + L2 LINE L2 3002 3313 0 643 162 0 49 chr13 82858226 82858368 -19014801 + L1MA7 LINE L1 5978 6112 -179 263 321 88 34 chr13 82858410 82858717 -19014452 - L2 LINE L2 -213 3059 2701 2431 187 59 16 chr13 82858999 82859695 -19013474 + Charlie2 DNA MER1_type 1855 2580 -282 2608 52 0 0 chr13 82859697 82860006 -19013163 - AluY SINE Alu -2 309 1 1252 152 16 16 chr13 82860047 82860142 -19013027 - L1MB1 LINE L1 -125 6043 5949 1821 148 27 17 chr13 82860142 82860440 -19012729 - AluJb SINE Alu -11 301 1 1252 152 16 16 chr13 82860440 82860587 -19012582 - L1MB1 LINE L1 -218 5950 5801 1589 156 9 38 chr13 82860588 82860903 -19012266 + L1MB1 LINE L1 5486 5791 -543 899 193 108 19 chr13 82860903 82861172 -19011997 - MER33 DNA MER1_type -30 294 2 22 70 0 0 chr13 82863971 82864014 -19009155 + AT_rich Low_complexity Low_complexity 1 43 0 218 337 24 12 chr13 82864254 82864337 -19008832 + L3b LINE CR1 1341 1424 -159 2107 150 19 29 chr13 82865205 82865584 -19007585 + THE1C LTR MaLR 1 375 0 207 232 0 0 chr13 82865588 82865644 -19007525 + CT-rich Low_complexity Low_complexity 3 58 0 1996 180 91 5 chr13 82867603 82868042 -19005127 + L1MB4 LINE L1 5701 6177 -3 1128 232 96 32 chr13 82868187 82868626 -19004543 + MLT1C LTR MaLR 1 467 0 5968 215 56 11 chr13 82868672 82870233 -19002936 - L1 LINE L1 -2159 4051 2422 2189 299 105 30 chr13 82870224 82870562 -19002607 - L1 LINE L1 -5117 1024 713 * 1966 146 138 21 chr13 82870562 82870945 -19002224 + MSTA LTR MaLR 1 428 0 2189 299 105 30 chr13 82870945 82871555 -19001614 - L1 LINE L1 -5428 713 4 2542 81 0 0 chr13 82872055 82872365 -19000804 + AluSg SINE Alu 1 310 0 486 49 0 0 chr13 82872370 82872431 -19000738 + (TA)n Simple_repeat Simple_repeat 2 62 0 192 365 54 0 chr13 82873090 82873164 -19000005 - L2 LINE L2 -4 3268 3191 381 287 74 0 chr13 82874034 82874156 -18999013 - Tigger8 DNA MER2_type -355 311 181 236 223 117 39 chr13 82874395 82874498 -18998671 + MIR SINE MIR 117 227 -35 540 210 24 16 chr13 82874824 82874948 -18998221 + MER94 DNA DNA 10 134 0 617 256 89 25 chr13 82875452 82875655 -18997514 + MIR SINE MIR 22 237 -25 183 42 0 0 chr13 82876354 82876378 -18996791 + (CAA)n Simple_repeat Simple_repeat 2 25 0 260 264 81 35 chr13 82876663 82876750 -18996419 + L2 LINE L2 3223 3313 0 469 358 136 27 chr13 82876764 82877133 -18996036 - L2 LINE L2 0 3272 2864 276 158 0 0 chr13 82877133 82877190 -18995979 + (TG)n Simple_repeat Simple_repeat 2 58 0 206 305 85 68 chr13 82877242 82877419 -18995750 - L2 LINE L2 -498 2816 2637 477 90 0 0 chr13 82878226 82878293 -18994876 + (TTCC)n Simple_repeat Simple_repeat 4 70 0 2355 88 0 22 chr13 82878296 82878614 -18994555 - AluY SINE Alu 0 311 1 2169 139 0 0 chr13 82878624 82878933 -18994236 - AluSx SINE Alu 0 312 4 300 210 140 20 chr13 82879240 82879340 -18993829 + L1MC4 LINE L1 6592 6703 -1339 252 318 45 85 chr13 82879530 82879706 -18993463 + MIR3 SINE MIR 8 176 -32 1126 255 123 5 chr13 82880889 82881313 -18991856 - Charlie4a DNA MER1_type -6 502 29 1724 163 7 17 chr13 82883180 82883469 -18989700 - AluJo SINE Alu -19 293 8 249 269 204 0 chr13 82883709 82883802 -18989367 - MER94 DNA DNA -22 112 1 245 217 29 29 chr13 82883890 82883959 -18989210 + MIR SINE MIR 81 149 -113 213 352 134 21 chr13 82884560 82884702 -18988467 + MIR3 SINE MIR 2 159 -49 330 258 8 100 chr13 82884749 82884869 -18988300 - L2 LINE L2 -1 3312 3204 2432 113 3 42 chr13 82884923 82885302 -18987867 + THE1B LTR MaLR 1 364 0 222 302 58 0 chr13 82885431 82885517 -18987652 - L3b LINE CR1 -209 1374 1284 642 187 86 39 chr13 82886009 82886194 -18986975 - MLT1B LTR MaLR -187 187 10 2596 82 30 8 chr13 82886194 82886561 -18986608 - THE1C LTR MaLR 0 375 1 642 187 86 39 chr13 82886561 82886572 -18986597 - MLT1B LTR MaLR -364 10 1 210 71 0 0 chr13 82886815 82886843 -18986326 + (CA)n Simple_repeat Simple_repeat 2 29 0 837 216 31 16 chr13 82888177 82888371 -18984798 + MLT1B LTR MaLR 192 388 -2 29 0 0 0 chr13 82888475 82888504 -18984665 + AT_rich Low_complexity Low_complexity 1 29 0 319 233 153 64 chr13 82888775 82888977 -18984192 + L2 LINE L2 2834 3053 -219 1632 188 122 13 chr13 82889051 82889444 -18983725 + MER63B DNA MER1_type 1 436 0 235 261 123 0 chr13 82889479 82889544 -18983625 + L2 LINE L2 3134 3206 -66 290 275 0 33 chr13 82889945 82890036 -18983133 + L2 LINE L2 3184 3271 -1 609 257 133 51 chr13 82891141 82891427 -18981742 + MLT1I LTR MaLR 7 329 -80 402 209 148 17 chr13 82891427 82891542 -18981627 + MER94 DNA DNA 1 130 -4 609 257 133 51 chr13 82891542 82891609 -18981560 + MLT1I LTR MaLR 329 389 -20 285 98 0 0 chr13 82891902 82891943 -18981226 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 213 121 0 0 chr13 82892060 82892093 -18981076 + (TC)n Simple_repeat Simple_repeat 2 34 0 559 167 0 19 chr13 82892093 82892201 -18980968 - AluJb SINE Alu 0 312 207 495 0 0 0 chr13 82892903 82892958 -18980211 + (CA)n Simple_repeat Simple_repeat 1 55 0 318 280 121 53 chr13 82894485 82894692 -18978477 + MIR SINE MIR 39 259 -3 306 287 122 17 chr13 82894806 82894921 -18978248 - MER5A DNA MER1_type -4 185 59 388 195 126 0 chr13 82894929 82895016 -18978153 - MLT1C LTR MaLR 0 467 370 309 269 197 36 chr13 82895656 82895879 -18977290 + L1ME4a LINE L1 5794 6052 -69 393 297 36 9 chr13 82897227 82897338 -18975831 - MIR SINE MIR -148 114 1 262 314 98 52 chr13 82897371 82897524 -18975645 - L2 LINE L2 0 3313 3154 2351 85 3 0 chr13 82899074 82899367 -18973802 - AluSc SINE Alu -15 294 1 247 333 61 48 chr13 82899499 82899664 -18973505 + L3b LINE CR1 1328 1494 -89 449 258 168 7 chr13 82901815 82901970 -18971199 - MER5A DNA MER1_type 0 189 10 2248 140 56 35 chr13 82902247 82902766 -18970403 - MLT2A2 LTR ERVL 0 554 1 369 0 0 0 chr13 82902812 82902853 -18970316 + (CTTG)n Simple_repeat Simple_repeat 2 42 0 230 81 27 0 chr13 82902853 82902890 -18970279 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 603 0 0 0 chr13 82902974 82903041 -18970128 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 680 235 25 25 chr13 82903757 82903953 -18969216 - MLT1K LTR MaLR -15 573 378 511 256 11 0 chr13 82903953 82904129 -18969040 + CT-rich Low_complexity Low_complexity 1 178 0 284 253 120 40 chr13 82904137 82904287 -18968882 - MLT1K LTR MaLR -163 425 264 465 282 38 56 chr13 82904701 82904914 -18968255 - HAL1 LINE L1 -1800 707 499 375 171 0 0 chr13 82904953 82905029 -18968140 + (TG)n Simple_repeat Simple_repeat 2 77 0 21 57 0 0 chr13 82905277 82905312 -18967857 + AT_rich Low_complexity Low_complexity 1 35 0 499 246 90 8 chr13 82905880 82906014 -18967155 - MIR SINE MIR -1 261 117 877 246 11 0 chr13 82906058 82906245 -18966924 + MER5A DNA MER1_type 1 189 0 616 315 58 50 chr13 82906488 82907235 -18965934 + L1M4 LINE L1 3759 4511 -1635 387 284 78 14 chr13 82907389 82907671 -18965498 + L1M4 LINE L1 4729 5028 -1118 1380 264 50 31 chr13 82908598 82909351 -18963818 + L2 LINE L2 2545 3313 0 225 0 0 0 chr13 82910274 82910299 -18962870 + (TG)n Simple_repeat Simple_repeat 2 26 0 277 115 77 19 chr13 82910686 82910738 -18962431 - L2 LINE L2 -13 3300 3246 291 290 21 0 chr13 82911529 82911622 -18961547 + (CATATA)n Simple_repeat Simple_repeat 4 98 0 556 273 0 0 chr13 82912510 82912638 -18960531 - MER3 DNA MER1_type -80 129 2 866 213 58 0 chr13 82914077 82914265 -18958904 - MER3 DNA MER1_type -10 199 1 25 51 0 0 chr13 82914656 82914695 -18958474 + AT_rich Low_complexity Low_complexity 1 39 0 322 365 34 17 chr13 82914955 82915188 -18957981 + L2 LINE L2 2592 2828 -486 256 230 0 137 chr13 82915845 82916006 -18957163 + L2 LINE L2 3175 3313 0 27 62 0 0 chr13 82916038 82916086 -18957083 + AT_rich Low_complexity Low_complexity 1 48 0 404 333 10 0 chr13 82917318 82917420 -18955749 + L2 LINE L2 3163 3265 -7 1637 149 149 49 chr13 82917895 82918111 -18955058 - MSTA LTR MaLR 0 428 235 2481 100 0 0 chr13 82918111 82918420 -18954749 - AluSx SINE Alu -3 309 1 1637 149 149 49 chr13 82918420 82918592 -18954577 - MSTA LTR MaLR -193 235 1 21 0 0 0 chr13 82918774 82918795 -18954374 + AT_rich Low_complexity Low_complexity 1 21 0 287 313 35 42 chr13 82919495 82919639 -18953530 + MIR3 SINE MIR 2 144 -64 1673 140 32 68 chr13 82919673 82920027 -18953142 + AluSx SINE Alu 1 312 0 620 266 32 56 chr13 82920160 82920502 -18952667 + L1ME4a LINE L1 5531 5864 -257 328 217 11 97 chr13 82920574 82920749 -18952420 + L1ME4a LINE L1 5892 6051 -70 1082 241 0 5 chr13 82920942 82921166 -18952003 + MER58A DNA MER1_type 1 223 -1 2140 127 0 0 chr13 82921928 82922220 -18950949 + AluSx SINE Alu 5 296 -16 2249 99 17 0 chr13 82922743 82923061 -18950108 - AluSg SINE Alu 0 332 10 22 0 0 0 chr13 82923907 82923929 -18949240 + AT_rich Low_complexity Low_complexity 1 22 0 1962 133 3 52 chr13 82923980 82924159 -18949010 - AluSx SINE Alu -4 308 151 2116 107 0 0 chr13 82924159 82924430 -18948739 - AluSc SINE Alu -3 306 36 1962 133 3 52 chr13 82924430 82924574 -18948595 - AluSx SINE Alu -161 151 1 21 0 0 0 chr13 82927861 82927882 -18945287 + AT_rich Low_complexity Low_complexity 1 21 0 338 238 113 61 chr13 82927928 82928159 -18945010 + L1ME4a LINE L1 5830 6072 -49 233 177 0 65 chr13 82928261 82928323 -18944846 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 393 129 0 0 chr13 82928660 82928730 -18944439 + (TCCC)n Simple_repeat Simple_repeat 4 73 0 276 137 0 0 chr13 82928831 82928882 -18944287 + (TCCC)n Simple_repeat Simple_repeat 1 51 0 26 74 0 0 chr13 82930614 82930668 -18942501 + AT_rich Low_complexity Low_complexity 1 54 0 266 244 35 88 chr13 82930712 82930850 -18942319 - L1M4 LINE L1 -3580 2566 2449 2204 134 0 0 chr13 82930850 82931155 -18942014 + AluSx SINE Alu 1 305 -7 266 244 35 88 chr13 82931155 82931299 -18941870 - L1M4 LINE L1 -3697 2449 2299 1864 175 7 0 chr13 82932099 82932402 -18940767 + AluSx SINE Alu 1 305 -7 364 246 25 0 chr13 82932804 82932926 -18940243 + L1ME3A LINE L1 5832 5956 -214 21 36 0 0 chr13 82933078 82933106 -18940063 + AT_rich Low_complexity Low_complexity 1 28 0 333 263 0 0 chr13 82934325 82934424 -18938745 + (TA)n Simple_repeat Simple_repeat 2 100 0 420 20 0 0 chr13 82934438 82934487 -18938682 + (TG)n Simple_repeat Simple_repeat 2 50 0 25 51 0 0 chr13 82935142 82935181 -18937988 + AT_rich Low_complexity Low_complexity 1 39 0 4851 153 48 20 chr13 82935182 82935507 -18937662 - L1PA16 LINE L1 -11 6155 5841 595 54 11 11 chr13 82935507 82935600 -18937569 + (TA)n Simple_repeat Simple_repeat 2 94 0 4851 153 48 20 chr13 82935600 82936430 -18936739 - L1PA16 LINE L1 -325 5841 4961 2075 126 0 3 chr13 82936430 82936754 -18936415 + AluSx SINE Alu 1 323 0 4851 153 48 20 chr13 82936754 82937012 -18936157 - L1PA16 LINE L1 -1205 4961 4712 2928 163 38 64 chr13 82937139 82937825 -18935344 - L1MB8 LINE L1 -6 6172 5505 5413 265 131 23 chr13 82939387 82940443 -18932726 + L2 LINE L2 529 1469 -1844 1645 166 0 40 chr13 82940443 82940789 -18932380 + AluJb SINE Alu 1 334 0 5413 265 131 23 chr13 82940789 82942114 -18931055 + L2 LINE L2 1469 3302 -11 460 240 25 8 chr13 82942512 82942633 -18930536 - L2 LINE L2 -1271 2043 1921 1702 187 85 19 chr13 82942699 82943121 -18930048 + MLT1C LTR MaLR 1 450 -17 241 87 43 22 chr13 82943528 82943574 -18929595 - MLT1C LTR MaLR -343 124 78 1022 193 10 0 chr13 82943681 82943873 -18929296 - MER2 DNA MER2_type -151 194 1 40880 35 21 1 chr13 82944361 82950389 -18922780 - L1PA4 LINE L1 -4 6151 1 190 244 195 24 chr13 82950527 82950609 -18922560 + MIR SINE MIR 46 141 -67 1112 202 5 10 chr13 82950992 82951317 -18921852 + MLT1A1 LTR MaLR 10 365 0 2206 187 26 20 chr13 82951887 82952342 -18920827 - MER74C LTR ERVL 0 460 3 1432 153 227 20 chr13 82952352 82952652 -18920517 + MSTB LTR MaLR 1 386 -40 2213 135 8 27 chr13 82952652 82953023 -18920146 - THE1B LTR MaLR 0 364 1 1432 153 227 20 chr13 82953023 82953075 -18920094 + MSTB LTR MaLR 386 426 0 731 266 151 36 chr13 82954323 82954538 -18918631 - HAL1 LINE L1 -2 2505 2316 2077 179 5 23 chr13 82954538 82954935 -18918234 + MLT1B LTR MaLR 1 390 0 731 266 151 36 chr13 82954935 82955233 -18917936 - HAL1 LINE L1 -191 2316 1916 2184 78 3 50 chr13 82955233 82955555 -18917614 - AluY SINE Alu -4 307 1 731 266 151 36 chr13 82955555 82955618 -18917551 - HAL1 LINE L1 -591 1916 1862 1418 279 148 35 chr13 82955670 82956909 -18916260 - HAL1 LINE L1 -966 1541 164 521 330 89 0 chr13 82958491 82958715 -18914454 + MIR SINE MIR 15 258 -4 183 372 101 16 chr13 82958854 82958983 -18914186 + L2 LINE L2 3129 3268 -4 24 53 0 0 chr13 82959224 82959262 -18913907 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr13 82959620 82959655 -18913514 + AT_rich Low_complexity Low_complexity 1 35 0 273 270 32 56 chr13 82960456 82960582 -18912587 + L2 LINE L2 3153 3275 -38 1529 225 92 2 chr13 82961355 82961800 -18911369 - MLT1D LTR MaLR 0 505 21 2223 125 0 0 chr13 82961911 82962222 -18910947 - AluY SINE Alu 0 311 1 190 228 203 0 chr13 82962547 82962626 -18910543 - MIR SINE MIR -93 169 75 2134 127 6 29 chr13 82963794 82963919 -18909250 - MER1B DNA MER1_type -2373 339 213 1550 115 22 4 chr13 82963919 82964145 -18909024 + MER30 DNA MER1_type 1 230 0 2134 127 6 29 chr13 82964145 82964366 -18908803 - MER1B DNA MER1_type -2499 213 1 2364 59 7 3 chr13 82964473 82964781 -18908388 + AluY SINE Alu 1 309 0 1508 242 154 18 chr13 82964915 82965427 -18907742 + MLT1E LTR MaLR 4 585 -8 420 339 16 0 chr13 82966096 82966220 -18906949 + L2 LINE L2 3143 3268 -4 1679 173 35 14 chr13 82969501 82969790 -18903379 - AluJb SINE Alu -15 297 3 454 290 131 34 chr13 82969896 82970342 -18902827 + L1MC4 LINE L1 4114 4623 -1523 2092 236 56 15 chr13 82970342 82970863 -18902306 - MLT1F LTR MaLR 0 542 1 454 290 131 34 chr13 82970863 82970949 -18902220 + L1MC4 LINE L1 4623 4699 -1447 837 266 52 9 chr13 82970949 82971182 -18901987 - MIR SINE MIR -3 259 17 1538 87 92 0 chr13 82971224 82971442 -18901727 - AluSc SINE Alu -2 307 70 369 294 89 19 chr13 82972146 82972360 -18900809 + L1MC4 LINE L1 5578 5806 -2002 231 208 14 14 chr13 82973244 82973316 -18899853 + L1MC4 LINE L1 6971 7042 -1000 1238 141 0 0 chr13 82973326 82973518 -18899651 + Tigger1 DNA MER2_type 1504 1695 -723 546 29 0 0 chr13 82973537 82973605 -18899564 + (CA)n Simple_repeat Simple_repeat 1 68 0 14382 128 27 33 chr13 82973606 82975746 -18897423 - Tigger1 DNA MER2_type -1 2417 291 1365 161 165 0 chr13 82975746 82976001 -18897168 - AluJo SINE Alu -5 297 1 14382 128 27 33 chr13 82976001 82976291 -18896878 - Tigger1 DNA MER2_type -2127 291 1 356 227 50 8 chr13 82976334 82976453 -18896716 + L1MC4 LINE L1 7120 7243 -799 913 266 71 60 chr13 82976587 82977049 -18896120 + L1MC4 LINE L1 7447 7917 -125 441 0 0 0 chr13 82977049 82977098 -18896071 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 913 266 71 60 chr13 82977098 82977184 -18895985 + L1MC4 LINE L1 7917 8001 -41 358 204 259 9 chr13 82977671 82977779 -18895390 + MER5A DNA MER1_type 11 145 -44 2104 130 3 3 chr13 82978843 82979143 -18894026 + AluSx SINE Alu 1 300 -12 719 169 175 6 chr13 82980073 82980233 -18892936 + MER5A DNA MER1_type 1 187 -2 24 0 0 0 chr13 82980453 82980477 -18892692 + AT_rich Low_complexity Low_complexity 1 24 0 266 286 36 50 chr13 82980600 82980740 -18892429 - MLT1J LTR MaLR -47 464 327 2348 211 103 46 chr13 82980820 82981307 -18891862 + L1MD2 LINE L1 5634 6172 -187 215 31 31 0 chr13 82981307 82981339 -18891830 + (CA)n Simple_repeat Simple_repeat 1 33 0 2348 211 103 46 chr13 82981339 82981528 -18891641 + L1MD2 LINE L1 6172 6349 -10 263 239 68 34 chr13 82981542 82981630 -18891539 - MLT1J LTR MaLR -312 199 109 21 0 0 0 chr13 82982238 82982259 -18890910 + AT_rich Low_complexity Low_complexity 1 21 0 3639 161 50 17 chr13 82982266 82982972 -18890197 + L1MB4 LINE L1 5451 6179 -1 303 293 53 20 chr13 82984028 82984178 -18888991 + MIR SINE MIR 62 216 -46 22 56 0 0 chr13 82984325 82984361 -18888808 + AT_rich Low_complexity Low_complexity 1 36 0 1690 126 106 0 chr13 82984373 82984655 -18888514 + AluSx SINE Alu 1 309 0 736 182 119 13 chr13 82984740 82984899 -18888270 + MER5B DNA MER1_type 3 178 0 2302 130 22 3 chr13 82984918 82985273 -18887896 + THE1B LTR MaLR 1 362 -2 22 35 0 0 chr13 82986682 82986711 -18886458 + AT_rich Low_complexity Low_complexity 1 29 0 289 164 98 0 chr13 82988167 82988228 -18884941 + MIR3 SINE MIR 94 160 -48 525 254 0 129 chr13 82988228 82988429 -18884740 - MER5B DNA MER1_type 0 178 4 24 85 0 0 chr13 82988550 82988609 -18884560 + AT_rich Low_complexity Low_complexity 1 59 0 1994 112 51 3 chr13 82988809 82989104 -18884065 + AluSx SINE Alu 1 309 -3 391 260 134 54 chr13 82989124 82989347 -18883822 - L1MB8 LINE L1 -194 5976 5736 330 239 71 25 chr13 82989349 82989480 -18883689 - L1MB8 LINE L1 -650 5516 5381 5586 152 19 30 chr13 82989487 82990899 -18882270 - L1MA9 LINE L1 0 6312 4922 312 113 19 0 chr13 82990904 82990957 -18882212 - L1MA9 LINE L1 -1193 4953 4900 278 200 163 30 chr13 82990954 82991089 -18882080 - L1M3c LINE L1 -4751 1390 1238 * 1023 253 142 28 chr13 82991097 82991498 -18881671 - MLT1D LTR MaLR -56 440 3 252 293 20 20 chr13 82992947 82993046 -18880123 + MIR3 SINE MIR 109 207 -1 755 335 35 33 chr13 82993145 82993663 -18879506 + L2 LINE L2 2795 3311 -2 345 245 204 7 chr13 82994815 82994962 -18878207 + MIR SINE MIR 84 259 -3 821 130 0 8 chr13 82995013 82995136 -18878033 + FLAM_C SINE Alu 1 122 -11 219 132 53 66 chr13 82995138 82995214 -18877955 + T-rich Low_complexity Low_complexity 6 80 0 * 237 235 10 10 chr13 82995164 82995262 -18877907 + (TTTA)n Simple_repeat Simple_repeat 1 98 0 1607 166 48 4 chr13 82995262 82995559 -18877610 + AluJo SINE Alu 1 309 0 277 357 92 0 chr13 82996935 82997033 -18876136 + MER91A DNA MER1_type 90 196 0 2134 149 14 14 chr13 82997395 82997757 -18875412 + MLT1A1 LTR MaLR 1 362 -3 339 286 29 93 chr13 82997841 82997981 -18875188 + MER5A DNA MER1_type 54 184 -5 294 380 60 18 chr13 82998172 82998338 -18874831 - L3 LINE CR1 -5 1572 1400 2238 113 0 0 chr13 82998444 82998745 -18874424 - AluSq SINE Alu -12 301 1 510 79 0 0 chr13 82999542 82999618 -18873551 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 413 271 0 0 chr13 82999691 82999787 -18873382 + MIR SINE MIR 99 194 -68 2580 205 12 6 chr13 82999968 83000460 -18872709 - LTR53 LTR ERVL -24 495 1 1989 124 31 7 chr13 83001349 83001639 -18871530 + AluSx SINE Alu 1 297 -15 235 78 39 20 chr13 83002418 83002469 -18870700 + T-rich Low_complexity Low_complexity 3 54 0 2385 86 3 0 chr13 83003077 83003380 -18869789 + AluSp SINE Alu 1 304 -9 355 259 238 11 chr13 83003929 83004114 -18869055 - MIR SINE MIR 0 262 36 306 48 0 0 chr13 83004654 83004696 -18868473 - L1MA9 LINE L1 -5 6307 6266 2199 104 0 3 chr13 83004764 83005053 -18868116 + AluSc SINE Alu 1 288 -21 312 93 0 0 chr13 83005062 83005105 -18868064 - L1MA9 LINE L1 -214 6098 6056 909 209 0 0 chr13 83005105 83005268 -18867901 - AluJb SINE Alu -9 303 141 232 163 0 41 chr13 83005921 83005970 -18867199 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1757 132 79 22 chr13 83006804 83007159 -18866010 + THE1C LTR MaLR 1 375 0 464 265 40 36 chr13 83007337 83007586 -18865583 + L1MA8 LINE L1 6039 6288 -3 497 356 45 6 chr13 83007871 83008048 -18865121 - MIR3 SINE MIR -8 200 17 1258 190 0 14 chr13 83008465 83008787 -18864382 + MLT1A1 LTR MaLR 1 365 0 257 349 61 45 chr13 83008829 83009159 -18864010 + L2 LINE L2 2466 2800 -514 895 222 86 25 chr13 83009485 83009708 -18863461 - MER82 DNA MER2_type -1 652 415 1956 112 28 34 chr13 83009708 83010029 -18863140 - THE1B LTR MaLR 0 364 46 541 339 25 70 chr13 83010473 83011085 -18862084 - L2 LINE L2 0 3272 2707 2160 138 33 28 chr13 83011085 83011447 -18861722 + THE1B LTR MaLR 1 364 0 541 339 25 70 chr13 83011447 83011545 -18861624 - L2 LINE L2 -565 2707 2606 26 0 0 0 chr13 83013092 83013118 -18860051 + AT_rich Low_complexity Low_complexity 1 26 0 200 184 20 0 chr13 83014020 83014069 -18859100 + GA-rich Low_complexity Low_complexity 3 52 0 329 148 235 0 chr13 83014109 83014190 -18858979 + MIR SINE MIR 66 165 -97 1850 154 0 0 chr13 83014211 83014490 -18858679 + AluSx SINE Alu 1 279 -33 243 0 0 0 chr13 83014490 83014517 -18858652 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 306 191 383 0 chr13 83014766 83014881 -18858288 - MER63 DNA MER1_type -277 785 1 2183 109 6 3 chr13 83015100 83015412 -18857757 + AluSq SINE Alu 1 313 0 485 211 106 28 chr13 83015966 83016108 -18857061 - MIR SINE MIR -15 247 95 557 246 42 36 chr13 83016193 83016360 -18856809 + MIR SINE MIR 64 231 -31 2063 127 20 3 chr13 83016458 83016758 -18856411 - AluSq SINE Alu -8 305 1 411 275 140 17 chr13 83016834 83017012 -18856157 + MLT1E3 LTR MaLR 1 200 -393 1188 218 107 0 chr13 83017031 83017311 -18855858 + MLT1E3 LTR MaLR 315 624 0 255 276 79 13 chr13 83017499 83017575 -18855594 - MIR3 SINE MIR -21 187 107 21 57 0 0 chr13 83017703 83017738 -18855431 + AT_rich Low_complexity Low_complexity 1 35 0 930 144 0 0 chr13 83018335 83018515 -18854654 + (CA)n Simple_repeat Simple_repeat 1 180 0 2037 130 3 0 chr13 83019760 83020052 -18853117 - AluSx SINE Alu -18 294 2 586 212 0 0 chr13 83020151 83020264 -18852905 - FLAM_A SINE Alu -7 135 23 249 245 41 0 chr13 83020269 83020318 -18852851 - AluSp SINE Alu -117 186 136 598 249 95 6 chr13 83020396 83020565 -18852604 + MIR SINE MIR 79 262 0 3000 220 65 6 chr13 83020637 83021424 -18851745 - L1ME2 LINE L1 -44 6120 5288 2387 119 5 24 chr13 83022975 83023346 -18849823 + THE1B LTR MaLR 1 364 0 230 354 61 10 chr13 83023614 83023713 -18849456 + L2 LINE L2 3209 3312 -1 538 308 125 5 chr13 83025484 83025708 -18847461 + MIR SINE MIR 2 252 -10 198 316 51 38 chr13 83025818 83025897 -18847272 - L2 LINE L2 -44 3228 3149 2125 110 3 0 chr13 83026135 83026417 -18846752 - AluSc SINE Alu -26 283 1 2198 89 3 3 chr13 83026821 83027132 -18846037 + AluSx SINE Alu 1 311 0 200 263 132 0 chr13 83027576 83027652 -18845517 + L2 LINE L2 3226 3311 -2 276 350 106 6 chr13 83027818 83027978 -18845191 - MIR SINE MIR -14 248 73 309 348 88 41 chr13 83028069 83028434 -18844735 + L1ME LINE L1 4889 5270 -876 335 278 90 21 chr13 83028454 83028717 -18844452 + L1ME LINE L1 5265 5536 -585 661 347 108 26 chr13 83029455 83030170 -18842999 - L2 LINE L2 -157 3115 2318 2430 87 0 0 chr13 83030170 83030479 -18842690 - AluSc SINE Alu 0 309 1 661 347 108 26 chr13 83030479 83030569 -18842600 - L2 LINE L2 -954 2318 2237 193 106 21 21 chr13 83031005 83031052 -18842117 + (TA)n Simple_repeat Simple_repeat 2 48 0 293 272 33 0 chr13 83032491 83032583 -18840586 - MIR3 SINE MIR -6 202 108 2176 121 3 0 chr13 83032652 83032958 -18840211 - AluSq SINE Alu -6 307 1 2413 67 7 0 chr13 83034929 83035226 -18837943 - AluY SINE Alu -12 299 1 377 222 83 28 chr13 83035391 83035499 -18837670 - L2 LINE L2 -11 3302 3189 201 345 36 36 chr13 83035662 83035746 -18837423 + L2 LINE L2 3142 3225 -47 433 356 0 11 chr13 83036112 83036286 -18836883 - MIR SINE MIR -87 175 4 443 364 156 2 chr13 83036612 83037035 -18836134 - L2 LINE L2 -338 2976 2489 331 323 60 58 chr13 83037049 83037449 -18835720 - MLT1I LTR MaLR -8 401 1 2117 117 0 0 chr13 83037468 83037778 -18835391 - AluSq SINE Alu 0 310 1 198 103 0 0 chr13 83037823 83037852 -18835317 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 400 80 10 chr13 83040514 83040614 -18832555 - L2 LINE L2 -50 3222 3116 211 197 40 92 chr13 83040662 83040738 -18832431 - L2 LINE L2 0 3272 3201 1057 290 52 59 chr13 83041071 83041379 -18831790 + L1ME3A LINE L1 3607 3916 -2230 1769 171 0 4 chr13 83041379 83041660 -18831509 - AluJo SINE Alu -32 280 1 1057 290 52 59 chr13 83041660 83042062 -18831107 + L1ME3A LINE L1 3916 4312 -1834 223 178 0 0 chr13 83042063 83042108 -18831061 + (TATG)n Simple_repeat Simple_repeat 3 47 0 356 223 155 0 chr13 83042271 83042374 -18830795 + L1ME3A LINE L1 4471 4589 -1557 1738 156 21 28 chr13 83043626 83043914 -18829255 + AluJo SINE Alu 1 286 -26 349 264 0 0 chr13 83047162 83047249 -18825920 + MIR SINE MIR 176 262 0 23 0 0 0 chr13 83047334 83047357 -18825812 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chr13 83047511 83047544 -18825625 + (TG)n Simple_repeat Simple_repeat 2 34 0 743 336 51 8 chr13 83048151 83048621 -18824548 + L1ME3A LINE L1 5451 5940 -230 306 315 44 54 chr13 83048693 83048896 -18824273 + L1ME3A LINE L1 5970 6170 0 27 0 0 0 chr13 83048942 83048969 -18824200 + AT_rich Low_complexity Low_complexity 1 27 0 1823 146 8 50 chr13 83049055 83049090 -18824079 - L1MA9 LINE L1 -153 6159 6124 2014 137 7 0 chr13 83049090 83049382 -18823787 + AluSg SINE Alu 2 295 -15 1823 146 8 50 chr13 83049382 83049709 -18823460 - L1MA9 LINE L1 -188 6124 5812 746 153 20 20 chr13 83049745 83049895 -18823274 + L1MA9 LINE L1 6163 6312 0 182 350 150 0 chr13 83050604 83050704 -18822465 - L2 LINE L2 -19 3294 3180 535 322 75 17 chr13 83050733 83050972 -18822197 - MIR SINE MIR -1 261 9 408 40 0 0 chr13 83051554 83051604 -18821565 + (CA)n Simple_repeat Simple_repeat 2 51 0 689 305 46 78 chr13 83054049 83054643 -18818526 - L2 LINE L2 -20 3252 2659 1439 226 24 0 chr13 83054870 83055207 -18817962 - L1M4 LINE L1 -1053 5093 4749 4822 135 30 25 chr13 83055207 83055342 -18817827 - L1MA9 LINE L1 0 6312 6179 311 0 26 0 chr13 83055342 83055381 -18817788 + (TTCC)n Simple_repeat Simple_repeat 4 43 0 4822 135 30 25 chr13 83055381 83056131 -18817038 - L1MA9 LINE L1 -133 6179 5422 1801 231 24 8 chr13 83056131 83056638 -18816531 - L1M4 LINE L1 -1476 4670 4156 260 303 136 19 chr13 83056851 83057013 -18816156 - MLT1H LTR MaLR -275 274 94 454 330 35 75 chr13 83057281 83057626 -18815543 + L2 LINE L2 2941 3271 -1 247 259 17 0 chr13 83057633 83057691 -18815478 + GA-rich Low_complexity Low_complexity 4 62 0 328 272 49 66 chr13 83059791 83060140 -18813029 - HAL1 LINE L1 -1047 1460 1118 258 147 13 40 chr13 83060199 83060274 -18812895 + (CATATA)n Simple_repeat Simple_repeat 6 78 0 289 255 196 47 chr13 83060275 83060530 -18812639 - HAL1 LINE L1 -1434 1073 781 1277 206 50 53 chr13 83060969 83061366 -18811803 + MLT2C1 LTR ERVL 2 397 0 1580 163 3 35 chr13 83061684 83061967 -18811202 + AluJo SINE Alu 1 274 -38 272 250 48 67 chr13 83061978 83062082 -18811087 - L1MC/D LINE L1 -2192 5616 5515 261 304 99 56 chr13 83062085 83062398 -18810771 + L3 LINE CR1 1094 1462 -115 5547 94 11 31 chr13 83062578 83063408 -18809761 + L1PA13 LINE L1 5350 6162 -1 2048 131 7 0 chr13 83063819 83064123 -18809046 + AluSq SINE Alu 1 306 0 1500 161 145 13 chr13 83064925 83065229 -18807940 - MER2 DNA MER2_type 0 344 1 343 329 68 48 chr13 83065450 83065657 -18807512 + MIR SINE MIR 46 256 -6 353 209 22 0 chr13 83065751 83065842 -18807327 + GA-rich Low_complexity Low_complexity 3 95 0 186 43 0 0 chr13 83065840 83065863 -18807306 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 * 197 339 128 9 chr13 83066449 83066558 -18806611 - MIR SINE MIR -27 235 114 198 143 0 0 chr13 83067800 83067835 -18805334 + (A)n Simple_repeat Simple_repeat 1 35 0 524 258 124 6 chr13 83068183 83068361 -18804808 - MIR SINE MIR 0 262 64 2353 38 7 14 chr13 83069199 83069491 -18803678 - L1PA5 LINE L1 -8 6146 5857 21 82 0 0 chr13 83070237 83070286 -18802883 + AT_rich Low_complexity Low_complexity 1 49 0 232 276 46 0 chr13 83072435 83072522 -18800647 + (TA)n Simple_repeat Simple_repeat 2 92 0 22 35 0 0 chr13 83073896 83073925 -18799244 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr13 83075826 83075870 -18797299 + AT_rich Low_complexity Low_complexity 1 44 0 427 285 52 22 chr13 83076392 83076558 -18796611 - MIR SINE MIR -62 146 9 2142 106 0 33 chr13 83078724 83079027 -18794142 - AluSg1 SINE Alu -16 293 1 2085 205 2 30 chr13 83079072 83079472 -18793697 + MSTD LTR MaLR 6 394 -2 224 253 13 0 chr13 83079870 83079945 -18793224 + (TA)n Simple_repeat Simple_repeat 2 77 0 1340 174 10 10 chr13 83081045 83081335 -18791834 + MLT1B LTR MaLR 3 388 -2 267 189 11 21 chr13 83082026 83082121 -18791048 + (TA)n Simple_repeat Simple_repeat 2 95 0 24 53 0 0 chr13 83082193 83082231 -18790938 + AT_rich Low_complexity Low_complexity 1 38 0 412 287 111 76 chr13 83082435 83082724 -18790445 + HAL1 LINE L1 9 307 -2200 854 272 179 53 chr13 83082728 83083017 -18790152 + HAL1 LINE L1 429 680 -1827 1896 133 172 5 chr13 83083017 83083384 -18789785 - MSTA LTR MaLR 0 428 1 854 272 179 53 chr13 83083384 83083999 -18789170 + HAL1 LINE L1 680 1447 -1060 1793 230 38 32 chr13 83084034 83084529 -18788640 + MLT1D LTR MaLR 8 505 0 2151 271 83 20 chr13 83084565 83085479 -18787690 + HAL1 LINE L1 1506 2477 -30 1862 159 40 72 chr13 83085545 83085948 -18787221 + MLT1B LTR MaLR 1 390 0 2146 290 103 5 chr13 83086755 83087520 -18785649 + L2 LINE L2 1463 2302 -1012 244 361 95 51 chr13 83087836 83088110 -18785059 + L3b LINE CR1 1293 1578 -5 342 0 0 0 chr13 83088693 83088731 -18784438 + (A)n Simple_repeat Simple_repeat 1 38 0 199 244 0 115 chr13 83089007 83089085 -18784084 + MIR SINE MIR 65 133 -129 807 259 58 5 chr13 83089172 83089215 -18783954 + MIR SINE MIR 39 78 -184 315 71 0 0 chr13 83089215 83089257 -18783912 + (TG)n Simple_repeat Simple_repeat 1 42 0 807 259 58 5 chr13 83089257 83089418 -18783751 + MIR SINE MIR 78 254 -8 2529 109 11 11 chr13 83091058 83091433 -18781736 + THE1C LTR MaLR 1 375 0 218 220 130 60 chr13 83091482 83091582 -18781587 + MIR SINE MIR 48 154 -108 201 279 10 87 chr13 83091668 83091772 -18781397 - MIR SINE MIR -147 115 20 * 353 314 31 116 chr13 83091746 83092160 -18781009 + L2 LINE L2 2894 3272 0 1985 151 16 0 chr13 83092223 83092528 -18780641 - AluJb SINE Alu -2 310 1 211 245 34 122 chr13 83093102 83093249 -18779920 - MIR SINE MIR -10 252 119 2505 262 55 18 chr13 83093262 83094084 -18779085 - L1MB7 LINE L1 -11 6173 5322 4897 244 35 10 chr13 83094132 83094870 -18778299 + L1PBb LINE L1 354 1072 -5131 323 60 20 0 chr13 83094870 83094920 -18778249 + (CA)n Simple_repeat Simple_repeat 2 52 0 4897 244 35 10 chr13 83094920 83096215 -18776954 + L1PBb LINE L1 1072 2644 -3559 1333 191 58 78 chr13 83096221 83096691 -18776478 - MLT2A2 LTR ERVL -94 460 3 1259 185 0 0 chr13 83096785 83097001 -18776168 - L1MB7 LINE L1 -1054 5092 4877 1765 264 57 59 chr13 83097571 83098407 -18774762 + L1ME3 LINE L1 4807 5643 -519 2098 135 3 6 chr13 83098407 83098718 -18774451 + AluSq SINE Alu 1 310 -3 1765 264 57 59 chr13 83098718 83098832 -18774337 + L1ME3 LINE L1 5643 5756 -406 2344 112 0 6 chr13 83098832 83099146 -18774023 + AluSx SINE Alu 1 312 0 1765 264 57 59 chr13 83099146 83099462 -18773707 + L1ME3 LINE L1 5756 6076 -86 1371 189 158 0 chr13 83099895 83100149 -18773020 - AluJb SINE Alu -8 294 1 258 32 0 0 chr13 83100399 83100430 -18772739 + (TC)n Simple_repeat Simple_repeat 2 32 0 405 0 0 0 chr13 83100431 83100476 -18772693 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr13 83102682 83102704 -18770465 + AT_rich Low_complexity Low_complexity 1 22 0 7139 53 2 0 chr13 83102765 83104219 -18768950 + L1PA7 LINE L1 4696 6152 -2 266 174 10 41 chr13 83104973 83105071 -18768098 + GA-rich Low_complexity Low_complexity 2 96 0 296 294 24 18 chr13 83105112 83105282 -18767887 + (TA)n Simple_repeat Simple_repeat 2 172 0 223 241 45 18 chr13 83105297 83105409 -18767760 + (TA)n Simple_repeat Simple_repeat 1 115 0 326 89 0 0 chr13 83106230 83106275 -18766894 + L2 LINE L2 3267 3311 -2 2182 288 68 47 chr13 83107070 83107946 -18765223 - L2 LINE L2 -2 3311 2454 2344 118 53 3 chr13 83107946 83108303 -18764866 + THE1C LTR MaLR 1 375 0 2182 288 68 47 chr13 83108303 83108486 -18764683 - L2 LINE L2 -859 2454 2242 3436 66 7 2 chr13 83108486 83108941 -18764228 + L1PA10 LINE L1 5712 6168 0 2182 288 68 47 chr13 83108941 83109087 -18764082 - L2 LINE L2 -1071 2242 2100 586 205 63 0 chr13 83109213 83109340 -18763829 + MER63 DNA MER1_type 3 763 -73 25 51 0 0 chr13 83110895 83110934 -18762235 + AT_rich Low_complexity Low_complexity 1 39 0 212 260 20 0 chr13 83112021 83112071 -18761098 + MIR SINE MIR 91 141 -121 185 263 105 0 chr13 83113233 83113290 -18759879 + MIR SINE MIR 112 174 -88 5988 219 57 51 chr13 83113347 83115966 -18757203 + L1M4 LINE L1 2 2687 -3959 5477 182 36 18 chr13 83115974 83117882 -18755287 + L1PA16 LINE L1 4213 6159 -7 1934 219 84 6 chr13 83117933 83118482 -18754687 + L1M4 LINE L1 2671 3262 -3382 326 233 27 111 chr13 83118560 83118617 -18754552 - MIR SINE MIR -44 164 104 2352 93 44 25 chr13 83118617 83118983 -18754186 - THE1C LTR MaLR -2 373 1 326 233 27 111 chr13 83118983 83119087 -18754082 - MIR SINE MIR -104 104 42 464 264 0 0 chr13 83119266 83119376 -18753793 - MER81 DNA DNA 0 114 5 321 284 14 0 chr13 83119713 83119787 -18753382 + L2 LINE L2 3188 3262 -10 286 255 142 9 chr13 83119915 83120021 -18753148 - MIR SINE MIR -67 195 76 28 0 0 0 chr13 83120409 83120437 -18752732 + AT_rich Low_complexity Low_complexity 1 28 0 214 318 91 9 chr13 83121592 83121702 -18751467 + L2 LINE L2 3143 3261 -11 183 343 34 34 chr13 83121864 83122042 -18751127 - L2 LINE L2 -181 3091 2914 1402 191 26 16 chr13 83123211 83123514 -18749655 - MLT1A1 LTR MaLR -8 357 52 188 264 22 88 chr13 83123527 83123618 -18749551 + L2 LINE L2 2239 2323 -991 188 413 49 7 chr13 83123843 83123986 -18749183 + MIR3 SINE MIR 45 193 -15 204 83 56 0 chr13 83125078 83125114 -18748055 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 946 215 24 106 chr13 83125114 83125453 -18747716 - MLT1A1 LTR MaLR -54 311 1 521 322 124 57 chr13 83126571 83127538 -18745631 + L1ME3A LINE L1 47 1115 -5004 602 278 50 53 chr13 83127589 83128064 -18745105 + L1ME3A LINE L1 1196 1669 -4641 206 311 0 14 chr13 83128502 83128576 -18744593 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 219 69 0 0 chr13 83128584 83128613 -18744556 + (CA)n Simple_repeat Simple_repeat 2 30 0 2071 297 81 41 chr13 83128813 83131287 -18741882 + L1ME3A LINE L1 2491 5193 -960 2303 71 13 19 chr13 83131287 83131597 -18741572 + AluY SINE Alu 1 308 -3 2071 297 81 41 chr13 83131597 83132067 -18741102 + L1ME3A LINE L1 5193 5643 -510 1138 211 135 41 chr13 83132150 83132493 -18740676 + MER66A LTR ERV1 97 438 -40 481 262 89 11 chr13 83132493 83132699 -18740470 + L1ME3A LINE L1 5643 5876 -277 1554 174 7 3 chr13 83132699 83132986 -18740183 + L1PA16 LINE L1 5874 6161 -5 481 262 89 11 chr13 83132986 83133050 -18740119 + L1ME3A LINE L1 5876 5934 -219 249 288 15 0 chr13 83133256 83133322 -18739847 + (CATA)n Simple_repeat Simple_repeat 2 68 0 325 268 54 65 chr13 83134289 83134640 -18738529 + L1MEd LINE L1 682 1028 -5091 3583 157 24 15 chr13 83134994 83135657 -18737512 + LTR65 LTR ERV1 1 669 0 2057 114 37 45 chr13 83135857 83136235 -18736934 - THE1C LTR MaLR 0 375 1 433 270 25 61 chr13 83138778 83138941 -18734228 - MER69A DNA AcHobo -10 167 11 1742 163 7 20 chr13 83139028 83139334 -18733835 + AluJo SINE Alu 1 302 -10 536 218 78 22 chr13 83139562 83139741 -18733428 - MER5A DNA MER1_type 0 189 1 214 222 22 0 chr13 83140554 83140599 -18732570 - L2 LINE L2 -1 3271 3226 180 261 0 0 chr13 83144105 83144170 -18728999 + (TA)n Simple_repeat Simple_repeat 2 66 0 1783 163 3 0 chr13 83144524 83144813 -18728356 + AluJo SINE Alu 2 291 -21 4219 85 62 7 chr13 83145791 83146401 -18726768 - LTR9B LTR ERV1 0 644 1 223 267 29 48 chr13 83146942 83147047 -18726122 + MIR3 SINE MIR 94 196 -12 2439 64 0 3 chr13 83147597 83147893 -18725276 - AluY SINE Alu -15 296 2 2042 141 0 7 chr13 83147894 83148200 -18724969 - AluSx SINE Alu -8 304 1 354 306 121 29 chr13 83150015 83150188 -18722981 - L2 LINE L2 -1 3312 3124 2543 57 0 0 chr13 83150235 83150536 -18722633 - AluY SINE Alu -10 301 1 32 86 0 0 chr13 83150544 83150625 -18722544 + AT_rich Low_complexity Low_complexity 1 81 0 1100 283 167 30 chr13 83151061 83151471 -18721698 - HAL1 LINE L1 -608 1899 1546 1774 177 28 0 chr13 83151471 83151759 -18721410 + AluJb SINE Alu 1 296 -16 1100 283 167 30 chr13 83151759 83152365 -18720804 - HAL1 LINE L1 -961 1546 744 1533 199 28 22 chr13 83152516 83152878 -18720291 - MLT1A1 LTR MaLR -1 364 1 405 58 0 0 chr13 83153253 83153305 -18719864 + (TTTCC)n Simple_repeat Simple_repeat 2 53 0 206 100 0 0 chr13 83153305 83153335 -18719834 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 1944 151 13 0 chr13 83153335 83153634 -18719535 - AluSx SINE Alu -9 303 1 822 270 34 9 chr13 83154079 83154312 -18718857 - MIR SINE MIR -23 239 1 228 343 0 15 chr13 83154573 83154640 -18718529 - MIR SINE MIR -127 81 16 1976 156 3 7 chr13 83154707 83155015 -18718154 - AluSx SINE Alu -5 307 1 407 296 68 53 chr13 83155287 83155419 -18717750 + MIR3 SINE MIR 12 145 -63 1975 186 0 56 chr13 83156917 83157330 -18715839 - MLT1B LTR MaLR 0 390 1 237 345 147 8 chr13 83157800 83158038 -18715131 - L2 LINE L2 -1345 1969 1699 22 0 0 0 chr13 83158928 83158950 -18714219 + AT_rich Low_complexity Low_complexity 1 22 0 1169 197 41 54 chr13 83159576 83159776 -18713393 - MLT1B LTR MaLR -2 388 192 2037 129 26 83 chr13 83159776 83159843 -18713326 - THE1B LTR MaLR 0 364 295 2054 148 0 0 chr13 83159843 83160146 -18713023 - AluSq SINE Alu -10 303 1 2037 129 26 83 chr13 83160146 83160464 -18712705 - THE1B LTR MaLR -69 295 1 1169 197 41 54 chr13 83160464 83160558 -18712611 - MLT1B LTR MaLR -198 192 98 288 0 0 0 chr13 83162541 83162573 -18710596 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1390 199 30 10 chr13 83162575 83162871 -18710298 - AluJo SINE Alu -10 302 1 580 295 60 34 chr13 83164500 83164768 -18708401 - L3b LINE CR1 -163 1420 1146 2112 134 33 41 chr13 83165090 83165435 -18707734 + MLT1B LTR MaLR 5 348 -42 1651 109 12 16 chr13 83165435 83165683 -18707486 - AluSc SINE Alu -12 297 51 2112 134 33 41 chr13 83165683 83165726 -18707443 + MLT1B LTR MaLR 348 390 0 1907 208 83 2 chr13 83165791 83166239 -18706930 + L1MD3 LINE L1 7499 7982 -13 408 299 162 15 chr13 83166422 83166626 -18706543 - MIR SINE MIR -6 256 23 555 303 26 0 chr13 83166700 83166852 -18706317 - MER5B DNA MER1_type -3 175 20 239 318 30 38 chr13 83167769 83167901 -18705268 + L2 LINE L2 3141 3271 -1 225 94 0 0 chr13 83168153 83168185 -18704984 + (CA)n Simple_repeat Simple_repeat 1 32 0 419 305 112 0 chr13 83168514 83168711 -18704458 - MIR SINE MIR 0 262 44 1689 219 50 0 chr13 83168985 83169327 -18703842 + MLT1A1 LTR MaLR 5 363 -2 1113 258 176 18 chr13 83169926 83170540 -18702629 + L2 LINE L2 2603 3313 0 447 352 77 57 chr13 83171879 83172231 -18700938 - L2 LINE L2 0 3272 2914 254 360 44 53 chr13 83172266 83172380 -18700789 - L2 LINE L2 -493 2821 2709 1991 165 59 25 chr13 83173796 83174239 -18698930 + MLT1C LTR MaLR 3 460 -7 275 148 0 33 chr13 83174264 83174325 -18698844 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2736 216 48 34 chr13 83175391 83176034 -18697135 - MER82 DNA MER2_type 0 653 2 234 0 0 0 chr13 83176038 83176064 -18697105 + (TG)n Simple_repeat Simple_repeat 1 26 0 313 275 28 96 chr13 83176966 83177144 -18696025 - MIR3 SINE MIR -15 193 28 443 143 13 0 chr13 83177416 83177493 -18695676 + MADE1 DNA Mariner 3 80 0 21 36 0 0 chr13 83177836 83177864 -18695305 + AT_rich Low_complexity Low_complexity 1 28 0 2552 58 0 0 chr13 83178270 83178581 -18694588 - AluY SINE Alu 0 311 1 230 320 131 16 chr13 83178593 83178715 -18694454 + L2 LINE L2 3122 3257 -15 782 273 24 10 chr13 83179186 83179395 -18693774 + MIR SINE MIR 37 248 -14 703 306 82 25 chr13 83179396 83179903 -18693266 - L2 LINE L2 -101 3212 2677 1045 266 144 13 chr13 83179903 83180362 -18692807 - L2 LINE L2 -835 2479 1961 375 330 152 38 chr13 83180381 83181180 -18691989 + L2 LINE L2 2385 3263 -9 22 70 0 0 chr13 83181180 83181223 -18691946 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr13 83181251 83181289 -18691880 + AT_rich Low_complexity Low_complexity 1 38 0 956 26 0 0 chr13 83181348 83181463 -18691706 + L1PA3 LINE L1 6041 6155 0 258 216 0 0 chr13 83181470 83181544 -18691625 + A-rich Low_complexity Low_complexity 1 74 0 508 311 78 9 chr13 83182289 83182508 -18690661 - MIR SINE MIR -3 259 26 334 291 13 0 chr13 83182567 83182646 -18690523 - L2 LINE L2 -36 3277 3198 26 30 0 0 chr13 83183293 83183326 -18689843 + AT_rich Low_complexity Low_complexity 1 33 0 2239 88 0 3 chr13 83183328 83183644 -18689525 + AluY SINE Alu 1 315 0 198 0 0 0 chr13 83183647 83183669 -18689500 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 1601 221 78 67 chr13 83183920 83184649 -18688520 - L1MC5 LINE L1 -441 7520 6784 328 313 92 64 chr13 83185055 83185725 -18687444 - HAL1b LINE L1 -613 735 47 5086 147 55 4 chr13 83185821 83185958 -18687211 - L1PA16 LINE L1 -9 6157 6028 519 45 0 0 chr13 83185958 83186024 -18687145 + (TCCC)n Simple_repeat Simple_repeat 2 67 0 5086 147 55 4 chr13 83186024 83186842 -18686327 - L1PA16 LINE L1 -138 6028 5160 1577 277 42 11 chr13 83188940 83189470 -18683699 + L1ME3A LINE L1 5560 6105 -65 1684 250 29 65 chr13 83189483 83190379 -18682790 + L1M3e LINE L1 7 2072 -4958 207 0 0 0 chr13 83190380 83190403 -18682766 + (CAA)n Simple_repeat Simple_repeat 2 24 0 12531 217 38 20 chr13 83190433 83192237 -18680932 + L1PB3 LINE L1 539 2309 -3902 261 0 0 0 chr13 83192237 83192266 -18680903 + (TG)n Simple_repeat Simple_repeat 2 30 0 12531 217 38 20 chr13 83192266 83195232 -18677937 + L1PB3 LINE L1 2309 5526 -685 4605 118 3 9 chr13 83195238 83195939 -18677230 - L1PA13 LINE L1 0 6163 5467 4185 147 3 24 chr13 83195939 83196648 -18676521 + L1PB3 LINE L1 5517 6211 0 2997 234 62 46 chr13 83196660 83197276 -18675893 + L1MA8 LINE L1 2295 2900 -4665 1664 173 0 3 chr13 83197276 83197559 -18675610 + AluJo SINE Alu 28 309 -3 2997 234 62 46 chr13 83197559 83198325 -18674844 + L1MA8 LINE L1 2900 3643 -3922 2034 104 7 52 chr13 83198325 83198634 -18674535 + AluSp SINE Alu 1 295 -18 2997 234 62 46 chr13 83198634 83198874 -18674295 + L1MA8 LINE L1 3643 3878 -3687 6850 110 11 38 chr13 83198877 83199100 -18674069 + L1MA3 LINE L1 2208 2436 -5129 2263 99 0 37 chr13 83199100 83199422 -18673747 + AluSx SINE Alu 1 310 -2 6850 110 11 38 chr13 83199422 83199947 -18673222 + L1MA3 LINE L1 2436 2915 -4650 207 0 0 0 chr13 83199947 83199970 -18673199 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 6850 110 11 38 chr13 83199970 83200402 -18672767 + L1MA3 LINE L1 2915 3357 -4208 * 8886 158 9 10 chr13 83200396 83202870 -18670299 + L1MA3 LINE L1 5065 7537 -187 10365 173 51 48 chr13 83202899 83203522 -18669647 + L1MA8 LINE L1 4394 5014 -2696 2081 150 0 3 chr13 83203522 83203829 -18669340 - AluSx SINE Alu -6 306 1 10365 173 51 48 chr13 83203829 83204757 -18668412 + L1MA8 LINE L1 5014 5938 -1772 1127 232 87 67 chr13 83204757 83205205 -18667964 + MSTB2 LTR MaLR 1 457 0 10365 173 51 48 chr13 83205205 83206001 -18667168 + L1MA8 LINE L1 5938 6730 -980 2163 130 0 0 chr13 83206001 83206294 -18666875 + AluSx SINE Alu 1 293 -19 10365 173 51 48 chr13 83206294 83207248 -18665921 + L1MA8 LINE L1 6730 7705 -5 307 256 56 0 chr13 83207757 83207847 -18665322 - MER20 DNA MER1_type -31 188 94 1058 286 42 80 chr13 83208012 83208153 -18665016 - L2 LINE L2 -3 3310 3165 2173 122 0 19 chr13 83208153 83208465 -18664704 + AluSq SINE Alu 1 306 -7 1058 286 42 80 chr13 83208465 83208580 -18664589 - L2 LINE L2 -148 3165 3047 726 236 131 0 chr13 83208580 83208771 -18664398 + MER20 DNA MER1_type 2 217 -2 1058 286 42 80 chr13 83208771 83209091 -18664078 - L2 LINE L2 -266 3047 2770 2145 125 7 0 chr13 83209091 83209394 -18663775 + AluSg SINE Alu 5 309 -1 1058 286 42 80 chr13 83209394 83209575 -18663594 - L2 LINE L2 -543 2770 2584 971 148 22 0 chr13 83209589 83209772 -18663397 - MER53 DNA DNA 0 189 3 538 296 80 9 chr13 83210376 83210602 -18662567 + Charlie8 DNA MER1_type 1 242 -2175 2184 104 0 13 chr13 83211077 83211376 -18661793 + AluSg SINE Alu 1 295 -15 255 31 0 0 chr13 83212367 83212399 -18660770 + (TA)n Simple_repeat Simple_repeat 2 33 0 269 277 84 96 chr13 83212710 83212876 -18660293 - MIR3 SINE MIR -4 204 41 359 147 147 15 chr13 83213030 83213098 -18660071 - MLT1J LTR MaLR -61 450 374 1485 159 4 13 chr13 83213774 83214043 -18659126 + AluSx SINE Alu 45 311 0 2417 59 23 0 chr13 83214660 83215003 -18658166 - L1PA7 LINE L1 -571 5583 5234 4466 54 3 7 chr13 83215003 83215574 -18657595 + L1PA7 LINE L1 5582 6152 -2 2385 92 0 6 chr13 83215619 83215933 -18657236 - AluSx SINE Alu 0 312 1 257 114 0 0 chr13 83219260 83219304 -18653865 + L1PA15 LINE L1 6121 6164 -1 372 281 94 0 chr13 83219444 83219540 -18653629 - MIR SINE MIR -87 121 17 277 225 117 92 chr13 83220413 83220533 -18652636 - MIR3 SINE MIR -85 123 1 180 222 28 0 chr13 83221666 83221702 -18651467 + L2 LINE L2 3011 3047 -266 21 0 0 0 chr13 83222474 83222495 -18650674 + AT_rich Low_complexity Low_complexity 1 21 0 318 354 51 11 chr13 83222716 83222894 -18650275 + MIR3 SINE MIR 19 203 -5 426 239 124 0 chr13 83223132 83223245 -18649924 - MLT1L LTR MaLR -135 480 354 2244 79 29 0 chr13 83224034 83224313 -18648856 + AluSg SINE Alu 1 287 -23 506 297 62 42 chr13 83224406 83224854 -18648315 - L1ME LINE L1 -456 5714 5258 288 317 77 6 chr13 83225008 83225191 -18647978 - HAL1 LINE L1 -821 1686 1491 237 157 14 29 chr13 83225411 83225481 -18647688 + GA-rich Low_complexity Low_complexity 1 69 0 235 291 0 0 chr13 83225689 83225775 -18647394 - HAL1 LINE L1 -136 2371 2286 387 242 79 22 chr13 83225788 83225966 -18647203 - HAL1 LINE L1 -278 2229 2042 311 338 106 10 chr13 83225978 83226176 -18646993 - HAL1 LINE L1 -698 1809 1593 1300 287 120 60 chr13 83226277 83227523 -18645646 - HAL1 LINE L1 -1187 1320 1 28 0 0 0 chr13 83230005 83230033 -18643136 + AT_rich Low_complexity Low_complexity 1 28 0 5652 163 25 14 chr13 83230061 83232224 -18640945 - L1PA16 LINE L1 -6 6160 3984 183 235 296 26 chr13 83232239 83232354 -18640815 - MIR SINE MIR -3 259 114 1964 144 0 7 chr13 83233173 83233458 -18639711 + AluSx SINE Alu 1 283 -29 516 32 0 0 chr13 83233458 83233520 -18639649 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 380 287 84 18 chr13 83234135 83234302 -18638867 + MIR SINE MIR 67 244 -18 786 259 26 5 chr13 83234880 83235069 -18638100 - MIR SINE MIR -69 193 1 301 344 104 6 chr13 83235560 83235723 -18637446 + MIR SINE MIR 52 230 -32 253 308 93 0 chr13 83236432 83236539 -18636630 - MIR SINE MIR -62 146 30 995 103 5 38 chr13 83237536 83237720 -18635449 - L1MA8 LINE L1 -8 6283 6106 285 29 0 0 chr13 83237752 83237786 -18635383 + (TATG)n Simple_repeat Simple_repeat 2 35 0 1779 139 3 41 chr13 83237786 83238080 -18635089 - AluJb SINE Alu -29 283 1 216 158 0 0 chr13 83238854 83238892 -18634277 + (CACG)n Simple_repeat Simple_repeat 1 38 0 276 328 97 84 chr13 83239231 83239624 -18633545 + L2 LINE L2 2867 3264 -8 328 299 65 39 chr13 83241299 83241453 -18631716 + L2 LINE L2 3156 3313 0 2266 178 36 0 chr13 83242354 83242765 -18630404 - MSTB LTR MaLR 0 426 1 264 301 133 29 chr13 83242942 83243115 -18630054 - L2 LINE L2 -187 3085 2895 235 356 20 0 chr13 83243776 83243877 -18629292 + L3 LINE CR1 1165 1267 -310 658 266 92 34 chr13 83243881 83244174 -18628995 + MLT2D LTR ERVL 1 310 -104 293 145 16 0 chr13 83244227 83244289 -18628880 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 317 122 0 0 chr13 83244316 83244365 -18628804 + MLT2D LTR ERVL 467 515 0 180 111 0 0 chr13 83245256 83245283 -18627886 + (TC)n Simple_repeat Simple_repeat 2 28 0 27 49 0 0 chr13 83245358 83245399 -18627770 + AT_rich Low_complexity Low_complexity 1 41 0 436 259 108 29 chr13 83246571 83246710 -18626459 - MER5B DNA MER1_type -27 151 2 551 276 17 0 chr13 83246864 83246980 -18626189 - L2 LINE L2 -8 3264 3147 781 322 97 73 chr13 83248309 83248893 -18624276 - L3 LINE CR1 -106 1471 862 189 0 0 0 chr13 83248893 83248914 -18624255 + (TA)n Simple_repeat Simple_repeat 1 21 0 781 322 97 73 chr13 83248914 83249112 -18624057 - L3 LINE CR1 -715 862 670 239 323 92 76 chr13 83250454 83250705 -18622464 - L3 LINE CR1 -989 588 334 545 271 45 26 chr13 83251410 83251530 -18621639 + MIR3 SINE MIR 36 162 -46 2069 101 7 14 chr13 83251530 83251852 -18621317 + AluSx SINE Alu 1 320 0 545 271 45 26 chr13 83251852 83251885 -18621284 + MIR3 SINE MIR 162 193 -15 2110 119 0 3 chr13 83253224 83253509 -18619660 + AluSg SINE Alu 14 297 -13 2184 120 0 0 chr13 83254122 83254421 -18618748 + AluSx SINE Alu 1 299 -13 2145 118 51 28 chr13 83255464 83255820 -18617349 + THE1B LTR MaLR 1 364 0 2294 103 0 7 chr13 83257289 83257591 -18615578 - AluY SINE Alu -11 300 1 2253 105 0 3 chr13 83257885 83258189 -18614980 - AluSx SINE Alu -9 303 1 186 329 107 21 chr13 83258317 83258457 -18614712 - MIR SINE MIR -6 256 105 201 351 105 0 chr13 83260489 83260603 -18612566 + MIR SINE MIR 76 201 -61 195 260 26 52 chr13 83261168 83261245 -18611924 - MIR SINE MIR -70 192 118 376 224 259 7 chr13 83261868 83262011 -18611158 + MER5A DNA MER1_type 1 179 -10 848 203 68 0 chr13 83262210 83262373 -18610796 + FRAM SINE Alu 1 174 -2 367 291 129 41 chr13 83263053 83263348 -18609821 + L1ME4a LINE L1 5637 5957 -164 448 306 101 29 chr13 83263402 83263680 -18609489 + L2 LINE L2 2491 2788 -526 4445 210 71 27 chr13 83263687 83265043 -18608126 - Charlie1a DNA MER1_type 0 1455 6 800 297 101 34 chr13 83265065 83265510 -18607659 + L2 LINE L2 2839 3313 0 834 220 6 0 chr13 83265613 83265781 -18607388 + FRAM SINE Alu 1 169 -7 1066 188 49 14 chr13 83265781 83266069 -18607100 - MER33 DNA MER1_type -25 299 2 417 333 48 21 chr13 83266492 83266678 -18606491 + L2 LINE L2 2672 2862 -452 357 284 78 9 chr13 83266969 83267085 -18606084 + L2 LINE L2 3190 3313 0 234 62 0 0 chr13 83267288 83267320 -18605849 + (TG)n Simple_repeat Simple_repeat 2 33 0 435 206 31 0 chr13 83267769 83267866 -18605303 + L1PB4 LINE L1 6051 6150 -6 30627 107 20 14 chr13 83267877 83270166 -18603003 + L1P LINE L1 11 2285 -3861 180 0 0 0 chr13 83270166 83270186 -18602983 + (CA)n Simple_repeat Simple_repeat 1 20 0 30627 107 20 14 chr13 83270186 83272817 -18600352 + L1P LINE L1 2285 4959 -1187 457 343 68 0 chr13 83273063 83273209 -18599960 - MIR SINE MIR -83 179 24 486 91 0 0 chr13 83274203 83274280 -18598889 + Tigger3(Golem) DNA MER2_type 195 271 -2758 1755 99 8 0 chr13 83274748 83275010 -18598159 - L1PA14 LINE L1 -259 5902 5639 1582 134 8 4 chr13 83275010 83275268 -18597901 + L1PA14 LINE L1 5900 6161 0 1705 171 11 14 chr13 83275482 83275768 -18597401 - AluJb SINE Alu -27 285 1 262 250 14 14 chr13 83275768 83275840 -18597329 + MLT1H LTR MaLR 130 201 -348 36 0 0 0 chr13 83276257 83276293 -18596876 + AT_rich Low_complexity Low_complexity 1 36 0 1924 127 38 14 chr13 83276510 83276801 -18596368 + AluSx SINE Alu 1 298 -14 1064 136 265 41 chr13 83276994 83277300 -18595869 - THE1C LTR MaLR 0 432 1 998 275 102 58 chr13 83277963 83278105 -18595064 + L2 LINE L2 2289 2423 -890 1444 165 128 28 chr13 83278105 83278457 -18594712 - MLT1B LTR MaLR -3 387 1 998 275 102 58 chr13 83278457 83279092 -18594077 + L2 LINE L2 2423 3086 -227 542 149 43 0 chr13 83279095 83279189 -18593980 + Tigger3(Golem) DNA MER2_type 2941 3038 0 433 289 87 63 chr13 83279484 83279910 -18593259 + HAL1b LINE L1 171 606 -742 250 288 68 54 chr13 83279981 83280617 -18592552 + L1ME LINE L1 4156 4790 -1356 609 122 0 1 chr13 83280675 83280775 -18592394 + L1 LINE L1 4067 4165 -1981 646 324 83 38 chr13 83280864 83281724 -18591445 + L1ME LINE L1 4860 5771 -399 403 256 24 40 chr13 83281742 83281867 -18591302 - MER94 DNA DNA 0 134 12 213 159 23 0 chr13 83282114 83282158 -18591011 + (TAA)n Simple_repeat Simple_repeat 2 46 0 632 259 18 0 chr13 83282244 83282410 -18590759 + L1PB3 LINE L1 1305 1473 -5390 5485 164 34 2 chr13 83282418 83282721 -18590448 + L1PB3 LINE L1 4793 5085 -1785 522 0 0 0 chr13 83282721 83282779 -18590390 + (TAAAA)n Simple_repeat Simple_repeat 3 60 0 5485 164 34 2 chr13 83282779 83284485 -18588684 + L1PB3 LINE L1 5085 6870 0 818 268 79 47 chr13 83284544 83285073 -18588096 + HAL1b LINE L1 625 1170 -178 24 32 0 0 chr13 83285184 83285215 -18587954 + AT_rich Low_complexity Low_complexity 1 31 0 782 263 30 63 chr13 83286016 83286188 -18586981 + MIR SINE MIR 2 163 -99 1695 201 5 27 chr13 83286188 83286561 -18586608 + MLT1A1 LTR MaLR 1 365 0 782 263 30 63 chr13 83286561 83286658 -18586511 + MIR SINE MIR 163 262 0 198 143 0 0 chr13 83287106 83287141 -18586028 + (GGAGAA)n Simple_repeat Simple_repeat 3 37 0 185 205 0 26 chr13 83288066 83288105 -18585064 - L2 LINE L2 -10 3262 3225 790 229 61 26 chr13 83288726 83288957 -18584212 - MIR SINE MIR -10 252 14 474 257 0 9 chr13 83289766 83289875 -18583294 + L2 LINE L2 2588 2695 -619 1242 177 12 0 chr13 83289885 83290128 -18583041 + L1MB7 LINE L1 5629 5874 -304 362 154 0 13 chr13 83290231 83290309 -18582860 + L1MB7 LINE L1 6108 6184 0 1001 300 65 14 chr13 83290311 83290884 -18582285 + L2 LINE L2 2702 3310 -3 2176 112 10 0 chr13 83290893 83291189 -18581980 + AluSx SINE Alu 1 299 -13 208 307 164 14 chr13 83291625 83291765 -18581404 - L2 LINE L2 -164 3149 2989 1936 205 123 26 chr13 83291788 83292363 -18580806 + LTR48B LTR ERV1 1 631 -13 541 371 29 40 chr13 83292374 83292830 -18580339 - L2 LINE L2 -397 2917 2467 365 259 254 67 chr13 83293410 83293843 -18579326 - MLT1H1 LTR MaLR 0 555 42 267 31 0 0 chr13 83295454 83295486 -18577683 + (TG)n Simple_repeat Simple_repeat 2 33 0 193 305 0 17 chr13 83295517 83295576 -18577593 - MER5A DNA MER1_type -41 148 91 3367 30 7 0 chr13 83295591 83295996 -18577173 - L1PA4 LINE L1 0 6155 5748 426 37 0 0 chr13 83295996 83296050 -18577119 + L1P LINE L1 5331 5384 -771 195 226 32 48 chr13 83296063 83296125 -18577044 + MER5A DNA MER1_type 129 189 0 574 151 0 0 chr13 83296648 83296734 -18576435 - AluY SINE Alu -224 86 1 1926 117 0 7 chr13 83297028 83297301 -18575868 - AluSx SINE Alu -9 303 33 1690 81 4 0 chr13 83297301 83297547 -18575622 - L1PA4 LINE L1 -161 5994 5748 425 83 0 0 chr13 83297541 83297601 -18575568 + L1P LINE L1 5325 5384 -771 * 604 41 0 0 chr13 83300182 83300283 -18572886 + L1PA5 LINE L1 6064 6164 0 524 258 124 6 chr13 83301100 83301278 -18571891 + MIR SINE MIR 64 262 0 234 128 0 0 chr13 83301626 83301665 -18571504 + (T)n Simple_repeat Simple_repeat 1 39 0 193 339 128 9 chr13 83302924 83303033 -18570136 + MIR SINE MIR 114 235 -27 259 224 35 0 chr13 83303639 83303724 -18569445 + CT-rich Low_complexity Low_complexity 3 90 0 341 329 68 48 chr13 83303819 83304026 -18569143 - MIR SINE MIR -6 256 46 1505 158 145 13 chr13 83304247 83304551 -18568618 + MER2 DNA MER2_type 1 344 0 2131 119 7 0 chr13 83305372 83305657 -18567512 - AluSq SINE Alu -26 287 1 5208 96 11 31 chr13 83306068 83306898 -18566271 - L1PA13 LINE L1 -1 6162 5350 29 0 0 0 chr13 83307132 83307161 -18566008 + AT_rich Low_complexity Low_complexity 1 29 0 262 269 186 28 chr13 83307244 83307389 -18565780 - L3 LINE CR1 -316 1261 1094 244 250 48 67 chr13 83307392 83307496 -18565673 + L1MC/D LINE L1 5515 5616 -2192 1605 163 3 35 chr13 83307507 83307790 -18565379 - AluJo SINE Alu -38 274 1 1293 204 50 53 chr13 83308108 83308506 -18564663 - MLT2C1 LTR ERVL 0 397 1 236 251 196 47 chr13 83308944 83309199 -18563970 + HAL1 LINE L1 781 1073 -1434 238 192 14 14 chr13 83309200 83309273 -18563896 + (TATATG)n Simple_repeat Simple_repeat 6 78 0 248 272 49 66 chr13 83309332 83309681 -18563488 + HAL1 LINE L1 1118 1460 -1047 21 36 0 0 chr13 83310071 83310099 -18563070 + AT_rich Low_complexity Low_complexity 1 28 0 3339 39 5 5 chr13 83310099 83310511 -18562658 - L1PA4 LINE L1 -1 6154 5743 7972 37 14 1 chr13 83310511 83311904 -18561265 + L1PA4 LINE L1 4340 5748 -406 239 309 33 101 chr13 83311912 83312153 -18561016 - L3 LINE CR1 -473 1104 891 2257 108 39 33 chr13 83312153 83312515 -18560654 - THE1B LTR MaLR 0 364 1 239 309 33 101 chr13 83312515 83312609 -18560560 - L3 LINE CR1 -686 891 792 1686 182 0 7 chr13 83313733 83314024 -18559145 + AluJb SINE Alu 3 291 -21 1596 160 72 36 chr13 83315794 83316156 -18557013 + THE1C LTR MaLR 1 375 0 1990 172 6 6 chr13 83317008 83317357 -18555812 - L1MC1 LINE L1 -5 6328 5980 263 52 69 0 chr13 83318437 83318495 -18554674 + (TA)n Simple_repeat Simple_repeat 1 62 0 247 259 0 0 chr13 83318956 83319010 -18554159 + MER5B DNA MER1_type 1 54 -124 1314 243 19 14 chr13 83319138 83319500 -18553669 + MLT1A1 LTR MaLR 2 365 0 242 254 28 14 chr13 83319550 83319621 -18553548 + MER5A DNA MER1_type 96 167 -22 2102 152 24 21 chr13 83321025 83321399 -18551770 + THE1C LTR MaLR 1 375 0 1320 236 36 11 chr13 83321492 83321848 -18551321 + MLT1A1 LTR MaLR 1 365 0 228 209 114 48 chr13 83321990 83322095 -18551074 - MIR SINE MIR -150 112 1 833 301 75 38 chr13 83325907 83326764 -18546405 + L1ME3A LINE L1 4799 5700 -470 1622 185 0 30 chr13 83326764 83327061 -18546108 - AluJo SINE Alu -24 288 1 833 301 75 38 chr13 83327061 83327253 -18545916 + L1ME3A LINE L1 5700 5883 -287 21 0 0 0 chr13 83327586 83327607 -18545562 + AT_rich Low_complexity Low_complexity 1 21 0 226 231 67 58 chr13 83327607 83327711 -18545458 - HAL1 LINE L1 -70 2437 2333 354 117 80 12 chr13 83328610 83328773 -18544396 + (TCTA)n Simple_repeat Simple_repeat 1 174 0 274 331 136 12 chr13 83329656 83329825 -18543344 - MIR SINE MIR -34 228 39 231 224 51 82 chr13 83330203 83330301 -18542868 + L2 LINE L2 3122 3216 -97 2232 102 0 0 chr13 83331048 83331352 -18541817 + AluY SINE Alu 3 306 -5 599 285 79 14 chr13 83333711 83333988 -18539181 - MER46C DNA MER2_type -4 334 40 2044 133 7 0 chr13 83334038 83334339 -18538830 + AluSx SINE Alu 1 303 -9 298 299 161 7 chr13 83334600 83334737 -18538432 + MIR SINE MIR 31 188 -74 1974 145 0 0 chr13 83334748 83335037 -18538132 + AluJb SINE Alu 1 289 -23 324 0 0 0 chr13 83335042 83335078 -18538091 + (TG)n Simple_repeat Simple_repeat 2 37 0 1114 255 79 45 chr13 83335112 83335603 -18537566 + MLT1J LTR MaLR 2 509 -2 2984 238 54 51 chr13 83336407 83337724 -18535445 - L1ME1 LINE L1 -6 6229 4917 204 67 0 0 chr13 83337724 83337754 -18535415 + (TG)n Simple_repeat Simple_repeat 1 30 0 2984 238 54 51 chr13 83337754 83337883 -18535286 - L1ME1 LINE L1 -1318 4917 4790 2045 118 0 3 chr13 83337883 83338189 -18534980 - AluSg SINE Alu -5 305 1 2984 238 54 51 chr13 83338189 83338734 -18534435 - L1ME1 LINE L1 -1445 4790 4239 280 300 22 20 chr13 83338775 83338922 -18534247 - L1ME1 LINE L1 -4359 1857 1483 201 317 85 0 chr13 83338996 83339078 -18534091 + MIR SINE MIR 46 134 -128 444 289 23 16 chr13 83339266 83339394 -18533775 + MIR SINE MIR 118 246 -16 251 352 138 14 chr13 83339476 83339621 -18533548 + L2 LINE L2 2572 2734 -580 29 0 0 0 chr13 83339641 83339670 -18533499 + AT_rich Low_complexity Low_complexity 1 29 0 406 350 91 60 chr13 83339766 83340197 -18532972 + L2 LINE L2 2829 3272 0 1835 138 6 35 chr13 83341508 83341819 -18531350 - AluSx SINE Alu -10 302 1 216 331 75 15 chr13 83342185 83342318 -18530851 - L3 LINE CR1 -861 716 576 903 171 0 0 chr13 83342630 83342776 -18530393 - FRAM SINE Alu -21 155 10 1349 201 8 11 chr13 83342788 83343052 -18530117 - AluJb SINE Alu -16 296 34 5319 137 23 39 chr13 83343052 83343706 -18529463 - L1MA8 LINE L1 -47 6244 5610 1723 162 14 3 chr13 83343706 83344003 -18529166 - AluJo SINE Alu -6 306 7 5319 137 23 39 chr13 83344003 83344341 -18528828 - L1MA8 LINE L1 -681 5610 5268 * 6362 142 52 7 chr13 83344336 83345486 -18527683 - L1MA8 LINE L1 -1094 5052 3851 183 284 157 0 chr13 83345709 83345811 -18527358 + MIR SINE MIR 124 241 -21 399 297 199 11 chr13 83345813 83346170 -18526999 + L2 LINE L2 2378 2801 -513 271 306 34 48 chr13 83346155 83346302 -18526867 + L2 LINE L2 3168 3312 -1 * 22 0 0 0 chr13 83347313 83347335 -18525834 + AT_rich Low_complexity Low_complexity 1 22 0 2838 94 0 3 chr13 83347905 83348297 -18524872 + L1PA12 LINE L1 5778 6168 0 725 306 187 34 chr13 83348365 83349393 -18523776 + L1M4 LINE L1 2300 3484 -2662 2861 10 0 0 chr13 83349397 83349711 -18523458 + AluYb8 SINE Alu 1 314 -4 1319 167 70 53 chr13 83349835 83350176 -18522993 - MLT1D LTR MaLR -158 347 1 21 36 0 0 chr13 83350190 83350218 -18522951 + AT_rich Low_complexity Low_complexity 1 28 0 243 314 12 12 chr13 83350323 83350409 -18522760 + L1MC/D LINE L1 5622 5707 -2101 431 262 5 64 chr13 83350528 83350715 -18522454 + MER104 DNA Tc2 2 177 -3 2772 281 99 26 chr13 83350800 83351273 -18521896 + L2 LINE L2 1636 2073 -1240 531 0 0 0 chr13 83351273 83351332 -18521837 + (TG)n Simple_repeat Simple_repeat 2 60 0 2772 281 99 26 chr13 83351332 83352328 -18520841 + L2 LINE L2 2073 3304 -9 195 261 0 22 chr13 83353708 83353754 -18519415 + MER5A DNA MER1_type 139 183 -6 341 219 8 67 chr13 83354444 83354563 -18518606 + L1M4 LINE L1 2202 2313 -3833 181 326 148 7 chr13 83357175 83357310 -18515859 + MIR3 SINE MIR 41 194 -14 406 352 67 5 chr13 83358217 83358410 -18514759 - MIR SINE MIR -47 215 11 227 325 17 17 chr13 83359787 83359904 -18513265 - L2 LINE L2 -2484 830 714 400 287 38 103 chr13 83360071 83360412 -18512757 - MLT1K LTR MaLR -145 443 125 208 239 22 0 chr13 83360795 83360841 -18512328 + L2 LINE L2 3265 3311 -2 593 320 63 47 chr13 83361482 83361972 -18511197 - L1M4 LINE L1 -2385 3761 3264 192 125 0 0 chr13 83362609 83362641 -18510528 + (TATATG)n Simple_repeat Simple_repeat 1 32 0 1285 200 87 55 chr13 83363215 83363644 -18509525 + MLT1C LTR MaLR 18 467 0 209 161 0 0 chr13 83363798 83363829 -18509340 + (TG)n Simple_repeat Simple_repeat 2 32 0 245 232 0 0 chr13 83363833 83363889 -18509280 + L1MC4 LINE L1 6648 6703 -1339 28 86 0 0 chr13 83363924 83363994 -18509175 + AT_rich Low_complexity Low_complexity 1 70 0 1478 298 79 31 chr13 83364402 83365879 -18507290 - L1ME LINE L1 -554 5852 4267 2301 82 3 0 chr13 83365879 83366171 -18506998 - AluSx SINE Alu -18 294 2 1478 298 79 31 chr13 83366171 83366485 -18506684 - L1ME LINE L1 -2139 4267 3969 334 286 55 42 chr13 83366600 83366891 -18506278 - L1ME LINE L1 -4700 1684 1397 2646 220 30 66 chr13 83367080 83367406 -18505763 - L1ME2 LINE L1 -28 6205 5869 2259 116 0 0 chr13 83367406 83367716 -18505453 - AluSg SINE Alu 0 310 1 2646 220 30 66 chr13 83367716 83368544 -18504625 - L1ME2 LINE L1 -364 5869 5087 781 240 77 28 chr13 83368550 83368913 -18504256 - L1ME2 LINE L1 -1488 4727 4347 950 219 46 138 chr13 83368916 83369199 -18503970 - MLT1E LTR MaLR 0 593 249 595 247 51 0 chr13 83369269 83369427 -18503742 - MLT1E LTR MaLR -427 166 1 4057 249 117 22 chr13 83369466 83371701 -18501468 - L1ME2 LINE L1 -1925 4290 1876 235 370 37 0 chr13 83371755 83371890 -18501279 - L1ME2 LINE L1 -5406 799 660 377 236 94 0 chr13 83372414 83372541 -18500628 - HAL1b LINE L1 -456 892 754 32 0 0 0 chr13 83372565 83372597 -18500572 + AT_rich Low_complexity Low_complexity 1 32 0 429 349 19 19 chr13 83372889 83373147 -18500022 - HAL1 LINE L1 -825 1682 1425 535 172 0 0 chr13 83373162 83373261 -18499908 - AluJb SINE Alu -6 306 208 26 0 0 0 chr13 83373964 83373990 -18499179 + AT_rich Low_complexity Low_complexity 1 26 0 180 176 0 0 chr13 83374108 83374142 -18499027 + (TA)n Simple_repeat Simple_repeat 1 34 0 2137 123 0 7 chr13 83374249 83374551 -18498618 + AluSx SINE Alu 1 300 -12 247 233 54 0 chr13 83375264 83375393 -18497776 + (TA)n Simple_repeat Simple_repeat 2 137 0 1054 145 0 0 chr13 83375393 83375552 -18497617 + AluSg/x SINE Alu 132 290 -22 30 83 0 0 chr13 83375578 83375650 -18497519 + AT_rich Low_complexity Low_complexity 1 72 0 657 265 79 5 chr13 83375662 83375851 -18497318 + MIR SINE MIR 39 241 -21 195 281 123 75 chr13 83376448 83376594 -18496575 - MIR3 SINE MIR -55 153 1 225 222 148 0 chr13 83377017 83377098 -18496071 - MER3 DNA MER1_type -18 191 99 2501 63 3 0 chr13 83377110 83377425 -18495744 - AluYb8 SINE Alu -2 316 1 516 68 0 0 chr13 83377631 83377704 -18495465 + (TC)n Simple_repeat Simple_repeat 1 73 0 346 285 81 47 chr13 83380918 83381090 -18492079 - MER5A DNA MER1_type -11 178 1 1411 35 0 0 chr13 83381351 83381522 -18491647 - L1PA2 LINE L1 -2 6153 5983 360 0 0 0 chr13 83381788 83381828 -18491341 + (TG)n Simple_repeat Simple_repeat 1 40 0 1476 57 0 0 chr13 83383013 83383207 -18489962 - L1PA2 LINE L1 -359 5796 5603 2362 29 0 0 chr13 83383207 83383483 -18489686 + L1PA5 LINE L1 5873 6150 -4 29420 116 13 63 chr13 83384928 83390927 -18482242 + L1P3 LINE L1 12 5696 -458 1981 59 0 12 chr13 83391047 83391300 -18481869 + AluY SINE Alu 1 250 -61 216 0 0 0 chr13 83391382 83391406 -18481763 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1790 174 77 33 chr13 83391611 83392072 -18481097 - LTR39 LTR ERV1 0 783 219 2097 105 17 3 chr13 83392072 83392367 -18480802 + AluSx SINE Alu 1 299 -13 666 274 78 17 chr13 83392424 83392654 -18480515 - MIR SINE MIR -4 258 15 1945 70 0 0 chr13 83393158 83393435 -18479734 + L1PA7 LINE L1 5896 6172 0 21 36 0 0 chr13 83393844 83393872 -18479297 + AT_rich Low_complexity Low_complexity 1 28 0 199 303 13 26 chr13 83395080 83395156 -18478013 - MIR SINE MIR -109 153 79 908 250 10 15 chr13 83395310 83395506 -18477663 - MER91A DNA MER1_type -1 195 1 21 57 0 0 chr13 83398437 83398472 -18474697 + AT_rich Low_complexity Low_complexity 1 35 0 2038 139 0 3 chr13 83398971 83399265 -18473904 + AluSx SINE Alu 1 293 -19 201 39 0 0 chr13 83399737 83399763 -18473406 + (CAA)n Simple_repeat Simple_repeat 2 27 0 243 352 101 6 chr13 83399857 83400016 -18473153 - MIR SINE MIR -14 248 75 * 685 281 99 60 chr13 83400012 83400599 -18472570 + L2 LINE L2 2704 3313 0 21 0 0 0 chr13 83400801 83400822 -18472347 + AT_rich Low_complexity Low_complexity 1 21 0 2703 226 46 42 chr13 83400822 83402437 -18470732 - L1ME1 LINE L1 -18 6542 4930 2414 243 63 52 chr13 83402615 83404315 -18468854 - L1ME1 LINE L1 -3485 3055 1327 369 62 0 0 chr13 83404345 83404393 -18468776 + (CA)n Simple_repeat Simple_repeat 2 49 0 182 377 0 0 chr13 83404646 83404699 -18468470 - L2 LINE L2 -10 3303 3251 486 283 26 0 chr13 83405478 83405630 -18467539 - MER117 DNA MER1_type -36 161 6 344 268 32 19 chr13 83406000 83406157 -18467012 + (TA)n Simple_repeat Simple_repeat 1 159 0 28 29 0 0 chr13 83409344 83409379 -18463790 + AT_rich Low_complexity Low_complexity 1 35 0 572 311 36 22 chr13 83409399 83409624 -18463545 - MIR SINE MIR -29 233 6 3562 176 76 69 chr13 83411782 83412639 -18460530 - MER21B LTR ERV1 0 863 1 529 217 23 47 chr13 83412659 83412788 -18460381 + MIR SINE MIR 63 188 -74 1754 164 11 58 chr13 83412835 83413212 -18459957 - MLT1B LTR MaLR -5 385 27 1961 13 0 0 chr13 83413226 83413456 -18459713 - L1P1 LINE L1 -532 5623 5394 3686 16 0 0 chr13 83413456 83413879 -18459290 + L1PA3 LINE L1 5732 6155 0 245 221 15 73 chr13 83413935 83414003 -18459166 + MER21B LTR ERV1 22 85 -778 690 100 0 0 chr13 83414012 83414112 -18459057 + (TA)n Simple_repeat Simple_repeat 2 101 0 187 333 74 59 chr13 83414276 83414411 -18458758 - MIR3 SINE MIR -70 138 2 966 284 152 28 chr13 83414715 83415314 -18457855 + L2 LINE L2 1441 2113 -1201 217 287 163 7 chr13 83415680 83415817 -18457352 - MIR SINE MIR -80 128 18 424 313 140 14 chr13 83415896 83416318 -18456851 - MLT1L LTR MaLR -7 608 134 1697 162 73 25 chr13 83419227 83419585 -18453584 + THE1C LTR MaLR 1 375 0 498 225 49 42 chr13 83419629 83419771 -18453398 - MIR SINE MIR -3 259 117 546 323 36 28 chr13 83421030 83421281 -18451888 + MIR SINE MIR 10 262 0 1711 166 9 16 chr13 83421358 83421678 -18451491 + MLT1C LTR MaLR 1 318 -149 1442 73 0 0 chr13 83421787 83421966 -18451203 + AluY SINE Alu 119 297 -14 845 238 45 97 chr13 83422307 83422732 -18450437 + MLT1I LTR MaLR 7 409 0 282 351 16 31 chr13 83423521 83423712 -18449457 - MER5A DNA MER1_type -1 188 1 195 311 122 0 chr13 83423725 83423815 -18449354 + L2 LINE L2 3142 3242 -30 310 271 157 12 chr13 83423842 83424008 -18449161 + MIR SINE MIR 37 226 -36 484 264 43 31 chr13 83424541 83424704 -18448465 - MIR SINE MIR -8 254 90 180 0 0 0 chr13 83426863 83426883 -18446286 + (CA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr13 83428087 83428108 -18445061 + AT_rich Low_complexity Low_complexity 1 21 0 776 275 60 38 chr13 83428185 83428582 -18444587 - HAL1 LINE L1 -698 1809 1404 394 303 90 73 chr13 83428603 83429002 -18444167 - HAL1 LINE L1 -1160 1347 942 1845 182 90 43 chr13 83429126 83429572 -18443597 - MLT1C LTR MaLR 0 467 1 1175 208 51 74 chr13 83432948 83433415 -18439754 + L1MC5 LINE L1 6925 7280 -681 308 232 48 104 chr13 83433773 83433856 -18439313 + MIR SINE MIR 24 99 -109 2100 109 0 67 chr13 83433856 83434185 -18438984 + AluSx SINE Alu 1 307 -5 308 232 48 104 chr13 83434185 83434226 -18438943 + MIR SINE MIR 99 141 -67 475 330 60 19 chr13 83434581 83434796 -18438373 - MIR SINE MIR -19 243 20 430 261 9 0 chr13 83435563 83435678 -18437491 + MIR SINE MIR 147 262 0 521 283 149 35 chr13 83437322 83437695 -18435474 + L1ME4a LINE L1 5618 6049 -72 2169 131 10 0 chr13 83437695 83438001 -18435168 - AluSx SINE Alu -3 309 1 521 283 149 35 chr13 83438001 83438062 -18435107 + L1ME4a LINE L1 6049 6102 -19 224 327 37 56 chr13 83438921 83439028 -18434141 - L2 LINE L2 0 3272 3168 254 284 126 32 chr13 83440016 83440111 -18433058 + L2 LINE L2 3208 3311 -2 26 0 0 0 chr13 83440199 83440225 -18432944 + AT_rich Low_complexity Low_complexity 1 26 0 241 277 98 45 chr13 83441242 83441354 -18431815 + L2 LINE L2 3155 3272 0 283 291 95 56 chr13 83442615 83442794 -18430375 + MIR SINE MIR 44 229 -33 4303 89 3 27 chr13 83443409 83444001 -18429168 - L1PA13 LINE L1 -1 6162 5585 2047 195 3 14 chr13 83444024 83444393 -18428776 + MER47A DNA MER2_type 1 365 -1 310 314 178 0 chr13 83445007 83445198 -18427971 - L3 LINE CR1 -12 1565 1341 421 304 85 36 chr13 83445457 83445681 -18427488 + MIR SINE MIR 21 255 -7 2397 102 0 0 chr13 83445760 83446065 -18427104 + AluSx SINE Alu 4 308 -4 188 310 159 9 chr13 83446089 83446202 -18426967 + MIR SINE MIR 62 191 -71 361 307 88 7 chr13 83449005 83449199 -18423970 - MIR SINE MIR -15 247 36 189 0 0 0 chr13 83449588 83449609 -18423560 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 29 0 0 chr13 83449689 83449724 -18423445 + (CA)n Simple_repeat Simple_repeat 2 36 0 646 258 99 15 chr13 83450856 83451217 -18421952 - MLT1J LTR MaLR -33 478 47 186 167 0 0 chr13 83454072 83454108 -18419061 + GA-rich Low_complexity Low_complexity 2 37 0 2475 88 112 6 chr13 83454306 83454645 -18418524 + THE1C LTR MaLR 1 375 0 305 195 0 13 chr13 83454853 83454930 -18418239 + (CA)n Simple_repeat Simple_repeat 1 76 0 280 241 0 12 chr13 83455460 83455543 -18417626 - L1ME LINE L1 -357 5764 5683 1003 259 111 22 chr13 83455750 83456120 -18417049 + LTR16A LTR ERVL 41 443 -7 21 36 0 0 chr13 83456369 83456397 -18416772 + AT_rich Low_complexity Low_complexity 1 28 0 2023 83 83 0 chr13 83456856 83457132 -18416037 - AluY SINE Alu -12 299 1 253 129 16 16 chr13 83457198 83457260 -18415909 + (TA)n Simple_repeat Simple_repeat 1 62 0 2343 104 0 0 chr13 83457479 83457787 -18415382 + AluSc SINE Alu 1 308 -1 22 0 0 0 chr13 83458661 83458683 -18414486 + AT_rich Low_complexity Low_complexity 1 22 0 211 263 137 21 chr13 83459924 83460019 -18413150 + L2 LINE L2 3145 3250 -22 384 76 54 11 chr13 83460046 83460138 -18413031 + (TA)n Simple_repeat Simple_repeat 2 97 0 24 32 0 0 chr13 83461627 83461658 -18411511 + AT_rich Low_complexity Low_complexity 1 31 0 589 313 41 59 chr13 83462167 83462366 -18410803 - MER115 DNA AcHobo -240 453 263 3307 110 41 23 chr13 83462366 83462849 -18410320 - LTR22B LTR ERVK 0 492 1 589 313 41 59 chr13 83462849 83463039 -18410130 - MER115 DNA AcHobo -430 263 71 856 218 19 70 chr13 83464691 83464948 -18408221 + MLT1I LTR MaLR 117 360 -49 309 68 0 0 chr13 83465685 83465729 -18407440 + (TC)n Simple_repeat Simple_repeat 2 45 0 414 0 0 0 chr13 83465729 83465775 -18407394 + (CA)n Simple_repeat Simple_repeat 1 46 0 2366 194 36 34 chr13 83467124 83467433 -18405736 + MER89 LTR ERV1 1 313 -246 2634 112 28 14 chr13 83467433 83467791 -18405378 + THE1B LTR MaLR 2 364 0 2366 194 36 34 chr13 83467791 83468039 -18405130 + MER89 LTR ERV1 313 559 0 1856 258 55 34 chr13 83468198 83468779 -18404390 - MLT1E LTR MaLR 0 593 1 2425 76 0 3 chr13 83469909 83470210 -18402959 + AluSx SINE Alu 1 300 -12 1663 261 55 53 chr13 83470955 83471817 -18401352 + L2 LINE L2 2460 3313 0 382 312 7 27 chr13 83472438 83472615 -18400554 + MER5A DNA MER1_type 6 189 0 233 244 51 26 chr13 83472844 83472922 -18400247 + MIR SINE MIR 111 190 -72 252 227 239 11 chr13 83473209 83473297 -18399872 + MIR SINE MIR 77 184 -78 21 0 0 0 chr13 83473729 83473750 -18399419 + AT_rich Low_complexity Low_complexity 1 21 0 2383 157 73 18 chr13 83474163 83474603 -18398566 - MLT2C2 LTR ERVL 0 464 1 531 223 9 0 chr13 83475270 83475357 -18397812 - Tigger5 DNA MER2_type 0 2323 2236 316 167 106 15 chr13 83475357 83475423 -18397746 + Tigger2 DNA MER2_type 2 73 -2645 * 2442 126 64 28 chr13 83475422 83475844 -18397325 + Tigger2 DNA MER2_type 2281 2717 -1 900 124 7 0 chr13 83475844 83475981 -18397188 - Tigger5 DNA MER2_type -83 2240 2103 398 207 172 0 chr13 83475979 83476095 -18397074 - Tigger5 DNA MER2_type -2187 136 1 * 353 58 19 0 chr13 83476349 83476401 -18396768 + (ATG)n Simple_repeat Simple_repeat 2 54 0 182 171 29 0 chr13 83476466 83476505 -18396664 - MIR SINE MIR -109 153 115 24 0 0 0 chr13 83477056 83477080 -18396089 + AT_rich Low_complexity Low_complexity 1 24 0 505 246 15 46 chr13 83477490 83477620 -18395549 - L2 LINE L2 0 3313 3188 192 40 0 0 chr13 83477633 83477658 -18395511 + (CA)n Simple_repeat Simple_repeat 2 26 0 1994 142 23 3 chr13 83477754 83478057 -18395112 - AluSx SINE Alu -3 309 1 1232 270 103 17 chr13 83478071 83479124 -18394045 - L1ME3A LINE L1 0 6170 5035 667 280 69 23 chr13 83479290 83479508 -18393661 - MIR SINE MIR -3 259 32 396 0 0 0 chr13 83480681 83480725 -18392444 + (CA)n Simple_repeat Simple_repeat 2 45 0 340 254 26 0 chr13 83481237 83481351 -18391818 - MER97c DNA MER1_type? -922 168 52 201 178 0 0 chr13 83482473 83482518 -18390651 + (CA)n Simple_repeat Simple_repeat 2 46 0 267 345 35 0 chr13 83482701 83482788 -18390381 - L2 LINE L2 -185 3087 2998 4094 200 35 6 chr13 83483233 83484545 -18388624 - L1MB5 LINE L1 -12 6162 4810 2469 129 8 3 chr13 83484736 83485109 -18388060 - THE1C LTR MaLR 0 375 1 431 336 60 13 chr13 83486518 83486833 -18386336 + L2 LINE L2 1982 2311 -1003 2374 119 8 16 chr13 83486972 83487349 -18385820 + THE1C LTR MaLR 2 375 0 222 293 110 12 chr13 83487450 83487532 -18385637 + L2 LINE L2 3136 3225 -47 285 355 70 42 chr13 83487588 83487901 -18385268 + L2 LINE L2 2656 2977 -337 347 302 0 0 chr13 83488961 83489047 -18384122 - MIR SINE MIR -67 141 56 184 307 80 0 chr13 83489271 83489359 -18383810 + MIR SINE MIR 94 188 -74 308 215 161 7 chr13 83489453 83489602 -18383567 - MER69 DNA AcHobo -104 2422 2251 619 151 50 0 chr13 83489609 83489728 -18383441 - L1MB4 LINE L1 -1 6179 6055 429 365 88 37 chr13 83489804 83490155 -18383014 + L2 LINE L2 2904 3272 0 395 232 34 133 chr13 83490243 83490506 -18382663 - L2 LINE L2 0 3313 3077 1364 238 125 31 chr13 83491451 83491908 -18381261 - MLT2B1 LTR ERVL 0 554 1 1721 209 58 0 chr13 83492415 83492759 -18380410 + MLT1A1 LTR MaLR 1 364 -1 2256 129 0 0 chr13 83493023 83493333 -18379836 + AluSg SINE Alu 1 310 0 2532 57 0 0 chr13 83493580 83493878 -18379291 - AluY SINE Alu -13 298 1 195 42 0 0 chr13 83494312 83494336 -18378833 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 662 280 145 13 chr13 83494436 83494911 -18378258 - L1ME4a LINE L1 -237 5884 5347 1604 95 0 0 chr13 83496225 83496456 -18376713 + L1P LINE L1 4741 4971 -1175 1460 201 71 21 chr13 83496554 83496976 -18376193 - L1ME2 LINE L1 -7 6157 5715 383 304 55 0 chr13 83497003 83497184 -18375985 + L1M4 LINE L1 5100 5290 -856 1135 192 45 42 chr13 83497184 83497496 -18375673 - L1ME2 LINE L1 -500 5664 5352 510 186 85 32 chr13 83500006 83500194 -18372975 - L1ME2 LINE L1 -782 5364 5167 1904 155 16 26 chr13 83500207 83500594 -18372575 + L1MA7 LINE L1 5785 6167 -124 600 227 31 0 chr13 83500601 83500729 -18372440 + MSTD LTR MaLR 3 134 -262 603 219 60 0 chr13 83500757 83500908 -18372261 + MSTD LTR MaLR 215 374 -22 623 149 7 21 chr13 83500908 83501049 -18372120 + L1MA7 LINE L1 6149 6287 -4 887 249 30 49 chr13 83501065 83501464 -18371705 - L1MEc LINE L1 -3269 2946 2553 2055 126 4 0 chr13 83501464 83501766 -18371403 - AluSx SINE Alu 0 307 5 887 249 30 49 chr13 83501766 83501794 -18371375 - L1MEc LINE L1 -3662 2553 2526 277 217 0 0 chr13 83501813 83501873 -18371296 + LTR40a LTR ERVL 1 60 -459 462 307 73 21 chr13 83501907 83502099 -18371070 - L1MEc LINE L1 -4751 1645 1444 2418 140 3 3 chr13 83502127 83502491 -18370678 - THE1B LTR MaLR 0 364 1 10610 111 35 2 chr13 83502491 83504019 -18369150 - THE1B-int LTR MaLR 0 1580 2 2188 114 16 27 chr13 83504020 83504332 -18368837 - THE1B LTR MaLR 0 364 55 2425 186 33 74 chr13 83504332 83504970 -18368199 - LTR9 LTR ERV1 0 612 1 2188 114 16 27 chr13 83504970 83505025 -18368144 - THE1B LTR MaLR -309 55 1 521 255 35 65 chr13 83505082 83505454 -18367715 - L1MEc LINE L1 -5074 1322 962 1185 200 22 106 chr13 83505507 83505922 -18367247 - MLT1B LTR MaLR 0 390 11 1708 279 102 16 chr13 83505932 83506696 -18366473 - L1MEc LINE L1 -5499 897 68 1283 278 68 25 chr13 83506742 83507504 -18365665 - L2 LINE L2 -5 3308 2505 196 237 8 168 chr13 83508108 83508137 -18365032 - L2 LINE L2 0 3313 3281 1555 165 41 31 chr13 83508137 83508428 -18364741 + AluJo SINE Alu 5 298 -14 196 237 8 168 chr13 83508428 83508529 -18364640 - L2 LINE L2 -32 3281 3204 1373 332 97 37 chr13 83508825 83509464 -18363705 - L2 LINE L2 -585 2729 1993 2695 154 120 67 chr13 83509464 83510154 -18363015 - LTR8A LTR ERV1 0 727 1 1373 332 97 37 chr13 83510154 83510639 -18362530 - L2 LINE L2 -1321 1993 1538 1080 173 7 5 chr13 83510696 83510875 -18362294 + MLT1C LTR MaLR 1 178 -212 1974 154 0 0 chr13 83510875 83511161 -18362008 + AluSx SINE Alu 1 286 -26 1080 173 7 5 chr13 83511161 83511185 -18361984 + MLT1C LTR MaLR 178 200 -190 496 144 289 0 chr13 83511192 83511282 -18361887 + AluJb SINE Alu 6 121 -191 512 159 0 53 chr13 83511287 83511457 -18361712 + (TA)n Simple_repeat Simple_repeat 1 161 0 942 175 7 13 chr13 83511459 83511613 -18361556 + AluJb SINE Alu 138 290 -22 1070 167 100 37 chr13 83511635 83511904 -18361265 + MLT1C LTR MaLR 178 463 -4 264 336 61 37 chr13 83511952 83512166 -18361003 - L2 LINE L2 -1879 1435 1217 459 0 0 0 chr13 83512169 83512220 -18360949 + (TG)n Simple_repeat Simple_repeat 2 52 0 206 331 80 45 chr13 83513602 83513739 -18359430 - MIR SINE MIR -73 135 19 420 274 23 89 chr13 83513956 83514171 -18358998 - MIR SINE MIR -55 207 12 197 390 0 0 chr13 83514164 83514223 -18358946 - L2 LINE L2 -8 3264 3206 * 197 251 98 17 chr13 83514326 83514413 -18358756 + MIR SINE MIR 72 144 -64 355 322 82 30 chr13 83515537 83515804 -18357365 + L1ME4a LINE L1 4567 4847 -1299 343 286 148 33 chr13 83516244 83516576 -18356593 + L1ME4a LINE L1 5319 5688 -433 264 231 68 8 chr13 83516759 83516876 -18356293 + L1ME4a LINE L1 5987 6110 -11 353 287 110 68 chr13 83517098 83517408 -18355761 + MLT1K LTR MaLR 155 477 -111 1054 257 110 35 chr13 83517957 83518530 -18354639 - MLT2E LTR ERVL 0 628 3 1939 194 30 28 chr13 83520142 83520575 -18352594 + Tigger2a DNA MER2_type 1 434 0 2113 148 0 0 chr13 83520622 83520933 -18352236 - AluSx SINE Alu -1 311 1 1143 216 96 48 chr13 83522516 83522914 -18350255 + MER96B DNA MER1_type 1 417 0 2028 93 0 0 chr13 83523284 83523541 -18349628 - AluSg SINE Alu -4 306 50 212 83 0 28 chr13 83524089 83524125 -18349044 + (TG)n Simple_repeat Simple_repeat 2 36 0 279 235 15 0 chr13 83524173 83524241 -18348928 - MER103 DNA DNA -25 141 73 1991 141 6 57 chr13 83524241 83524595 -18348574 + MER1B DNA MER1_type 1 336 -1 21 0 0 0 chr13 83525021 83525042 -18348127 + AT_rich Low_complexity Low_complexity 1 21 0 2263 143 24 5 chr13 83526594 83527007 -18346162 + L1MA4 LINE L1 5541 5961 -339 10060 173 59 27 chr13 83527016 83528429 -18344740 - L1M1 LINE L1 -743 6822 5456 192 77 0 0 chr13 83528429 83528455 -18344714 + (TTA)n Simple_repeat Simple_repeat 2 27 0 10060 173 59 27 chr13 83528455 83530672 -18342497 - L1M1 LINE L1 -2109 5456 3231 2609 168 40 4 chr13 83530686 83531161 -18342008 - L1M1 LINE L1 -4831 1734 1243 1008 130 0 39 chr13 83531165 83531372 -18341797 + L1MA7 LINE L1 6093 6291 0 417 302 87 23 chr13 83531591 83531763 -18341406 - MIR3 SINE MIR -7 201 19 28489 110 9 25 chr13 83532486 83538950 -18334219 + L1PA7 LINE L1 8 6464 -5 457 260 196 0 chr13 83540848 83541021 -18332148 - MIR SINE MIR -31 231 25 1488 230 44 66 chr13 83541344 83541549 -18331620 + MER90 LTR ERV1 56 264 -350 2098 134 0 7 chr13 83541549 83541854 -18331315 - AluSx SINE Alu -9 303 1 1488 230 44 66 chr13 83541854 83542195 -18330974 + MER90 LTR ERV1 264 590 -24 239 333 31 57 chr13 83542612 83542804 -18330365 + L2 LINE L2 2594 2780 -534 2277 104 102 76 chr13 83542928 83543361 -18329808 - MLT2A1 LTR ERVL 0 444 1 1131 245 50 26 chr13 83543472 83543896 -18329273 - Zaphod DNA AcHobo -2 4029 3596 1676 212 167 41 chr13 83543898 83544724 -18328445 - Zaphod DNA AcHobo -3044 987 58 2163 129 0 0 chr13 83544821 83545123 -18328046 - AluSx SINE Alu -10 302 1 2460 71 3 0 chr13 83545327 83545636 -18327533 + AluSp SINE Alu 2 311 -2 204 310 129 12 chr13 83546499 83546670 -18326499 - L2 LINE L2 -174 3139 2949 192 160 40 60 chr13 83546969 83547019 -18326150 + L2 LINE L2 3264 3312 -1 * 216 296 0 0 chr13 83547017 83547071 -18326098 + MIR SINE MIR 97 150 -112 1902 301 156 43 chr13 83547077 83548516 -18324653 - L2 LINE L2 -664 2650 1050 249 286 0 11 chr13 83549496 83549587 -18323582 + L3b LINE CR1 1178 1267 -316 284 237 17 0 chr13 83550028 83550087 -18323082 - MIR SINE MIR -71 137 78 558 221 9 9 chr13 83550566 83550679 -18322490 - MER81 DNA DNA 0 114 2 283 219 39 10 chr13 83550828 83550958 -18322211 + L1ME LINE L1 5730 5819 -302 1595 244 74 48 chr13 83551016 83551594 -18321575 - MLT1E LTR MaLR 0 593 1 2127 115 7 3 chr13 83551996 83552283 -18320886 + AluSx SINE Alu 1 288 -24 424 258 0 0 chr13 83552503 83552592 -18320577 + MER5A DNA MER1_type 18 106 -83 250 269 16 93 chr13 83552722 83552904 -18320265 + L1ME LINE L1 5689 5856 -314 408 309 34 29 chr13 83553242 83553481 -18319688 - L1MC/D LINE L1 -2179 5606 5367 309 262 37 47 chr13 83555132 83555239 -18317930 - MIR SINE MIR -69 139 34 27 0 0 0 chr13 83556370 83556397 -18316772 + AT_rich Low_complexity Low_complexity 1 27 0 195 354 119 23 chr13 83556445 83556747 -18316422 + L2 LINE L2 2640 2970 -344 341 337 0 0 chr13 83557075 83557164 -18316005 + L2 LINE L2 3123 3211 -61 218 327 0 0 chr13 83557221 83557276 -18315893 - MER91A DNA MER1_type -141 55 1 2304 78 0 0 chr13 83557535 83557816 -18315353 - AluY SINE Alu -3 308 28 313 271 234 0 chr13 83559063 83559170 -18313999 + L2 LINE L2 3180 3311 -2 432 346 55 13 chr13 83559219 83559456 -18313713 - MIR SINE MIR -14 248 2 3867 172 19 35 chr13 83559557 83559648 -18313521 + Tigger6a DNA MER2_type 2 93 -1504 2166 135 0 0 chr13 83559648 83559945 -18313224 - AluSx SINE Alu -11 301 5 3867 172 19 35 chr13 83559945 83560657 -18312512 + Tigger6a DNA MER2_type 93 792 -291 1453 148 31 74 chr13 83561479 83561803 -18311366 - AluSx SINE Alu 0 312 3 2124 134 0 0 chr13 83563089 83563379 -18309790 + AluSc SINE Alu 1 290 -19 285 254 0 0 chr13 83563379 83563450 -18309719 - 7SK RNA RNA -2 191 121 592 171 0 16 chr13 83563494 83563617 -18309552 - 7SK RNA RNA -72 121 1 637 168 114 23 chr13 83563619 83563839 -18309330 + Tigger6a DNA MER2_type 796 1035 -48 1573 189 19 36 chr13 83565356 83565716 -18307453 + MLT1A1 LTR MaLR 12 365 0 32 26 0 0 chr13 83565788 83565827 -18307342 + AT_rich Low_complexity Low_complexity 1 39 0 348 289 0 0 chr13 83566451 83566534 -18306635 + MIR3 SINE MIR 123 205 -3 389 196 49 14 chr13 83567360 83567503 -18305666 + (TA)n Simple_repeat Simple_repeat 2 149 0 449 340 55 5 chr13 83567677 83567877 -18305292 - MIR SINE MIR -13 249 40 4993 211 70 16 chr13 83567976 83569347 -18303822 - Charlie1a DNA MER1_type -6 1449 5 2062 115 0 11 chr13 83569597 83569906 -18303263 - AluSx SINE Alu 0 306 1 2238 141 81 0 chr13 83570218 83570614 -18302555 - MSTA LTR MaLR 0 428 1 739 286 14 38 chr13 83570922 83571132 -18302037 + MIR SINE MIR 13 217 -45 219 233 0 0 chr13 83571155 83571198 -18301971 + (CAT)n Simple_repeat Simple_repeat 3 45 0 451 308 13 13 chr13 83573656 83573883 -18299286 - L1ME LINE L1 -568 5581 5355 502 245 58 29 chr13 83573892 83574133 -18299036 - L1ME LINE L1 -816 5313 5066 340 273 145 76 chr13 83574296 83574502 -18298667 + MLT1J2 LTR MaLR 80 321 -129 1528 204 102 6 chr13 83574502 83574835 -18298334 + MLT1A1 LTR MaLR 1 365 0 340 273 145 76 chr13 83574835 83574972 -18298197 + MLT1J2 LTR MaLR 321 447 -3 781 187 82 18 chr13 83575837 83576008 -18297161 + MER5A DNA MER1_type 1 182 -7 456 294 44 19 chr13 83576386 83576546 -18296623 + MLT1J2 LTR MaLR 250 413 -37 254 258 100 17 chr13 83576573 83576693 -18296476 - L1P LINE L1 -1132 5014 4885 2681 233 57 44 chr13 83576971 83578671 -18294498 + L1ME1 LINE L1 4443 6153 -13 951 226 167 0 chr13 83578729 83579016 -18294153 - MER58B DNA MER1_type -4 337 3 619 295 48 9 chr13 83579031 83579346 -18293823 - L1ME LINE L1 -2023 4106 3780 235 263 40 26 chr13 83579836 83579988 -18293181 - L1ME LINE L1 -3959 2170 2017 219 114 0 0 chr13 83579988 83580023 -18293146 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 3563 146 57 2 chr13 83580439 83581049 -18292120 + LTR9B LTR ERV1 1 644 0 2129 188 70 16 chr13 83581049 83581538 -18291631 + HUERS-P3 LTR ERV1 1 515 -8404 6420 171 55 18 chr13 83581662 83582923 -18290246 + HUERS-P3 LTR ERV1 743 2050 -6869 * 10129 145 28 22 chr13 83582919 83584662 -18288507 + HUERS-P3 LTR ERV1 7164 8915 -4 3931 137 40 0 chr13 83584665 83585284 -18287885 + LTR9B LTR ERV1 1 644 0 1276 219 33 61 chr13 83585390 83585782 -18287387 - MER50 LTR ERV1 0 734 354 716 169 25 31 chr13 83585863 83586023 -18287146 - MER50 LTR ERV1 -566 168 10 781 282 73 64 chr13 83586076 83586327 -18286842 - L1MEd LINE L1 -4642 1668 1421 2279 109 11 14 chr13 83586327 83586674 -18286495 + L1PA8 LINE L1 5823 6168 -4 781 282 73 64 chr13 83586674 83587630 -18285539 - L1MEd LINE L1 -4889 1421 427 497 234 81 0 chr13 83587793 83587917 -18285252 + MER94 DNA DNA 1 134 0 351 295 32 74 chr13 83587996 83588186 -18284983 - L1MEd LINE L1 -5935 184 3 232 305 0 0 chr13 83589214 83589273 -18283896 + L2 LINE L2 3201 3259 -13 22 35 0 0 chr13 83589364 83589393 -18283776 + AT_rich Low_complexity Low_complexity 1 29 0 442 226 132 63 chr13 83589914 83590232 -18282937 - HAL1 LINE L1 -1439 1068 729 222 244 0 0 chr13 83590275 83590320 -18282849 + MIR SINE MIR 2 46 -216 367 364 65 20 chr13 83590517 83590869 -18282300 - HAL1 LINE L1 -1994 513 146 2606 182 178 45 chr13 83590880 83591609 -18281560 - LTR1B LTR ERV1 0 826 1 249 328 0 59 chr13 83591881 83592000 -18281169 + L1MEc LINE L1 195 306 -6090 1408 301 61 28 chr13 83592584 83592653 -18280516 + L1MEc LINE L1 831 896 -5500 2366 214 18 22 chr13 83592653 83593158 -18280011 + MLT1D LTR MaLR 1 503 -2 1408 301 61 28 chr13 83593158 83593279 -18279890 + L1MEc LINE L1 896 1011 -5385 6809 68 1 10 chr13 83593279 83594475 -18278694 + L1PA7 LINE L1 4964 6153 -1 1408 301 61 28 chr13 83594475 83595409 -18277760 + L1MEc LINE L1 1011 1994 -4402 444 270 64 27 chr13 83595553 83595849 -18277320 + L1MEc LINE L1 2040 2346 -4050 208 197 14 14 chr13 83595862 83595933 -18277236 + (TA)n Simple_repeat Simple_repeat 2 72 0 319 303 15 52 chr13 83596118 83596524 -18276645 + L1MEc LINE L1 791 1181 -5215 334 176 22 7 chr13 83597394 83597522 -18275647 + GA-rich Low_complexity Low_complexity 1 129 0 769 260 94 40 chr13 83597533 83598013 -18275156 + L1MC5 LINE L1 7311 7816 -145 2355 67 7 0 chr13 83598880 83599179 -18273990 - AluY SINE Alu -10 301 1 305 324 134 17 chr13 83600424 83600603 -18272566 + MIR3 SINE MIR 5 204 -4 264 298 97 24 chr13 83602320 83602444 -18270725 - MIR SINE MIR -110 152 20 278 368 26 0 chr13 83602708 83602822 -18270347 + MIR SINE MIR 4 120 -142 286 345 69 9 chr13 83602980 83603096 -18270073 - L2 LINE L2 -17 3255 3133 786 254 33 5 chr13 83603558 83603771 -18269398 - MIR SINE MIR -21 241 23 836 179 45 34 chr13 83603975 83604154 -18269015 + MER2 DNA MER2_type 2 182 -163 198 232 0 87 chr13 83604588 83604657 -18268512 + L2 LINE L2 3209 3271 -1 1965 139 7 17 chr13 83604746 83605047 -18268122 + AluSx SINE Alu 1 298 -14 5079 91 15 19 chr13 83605725 83606475 -18266694 + L1MA1 LINE L1 5554 6300 -2 1932 104 10 17 chr13 83607316 83607605 -18265564 - AluSx SINE Alu -25 287 1 339 54 71 0 chr13 83608778 83608834 -18264335 - Alu SINE Alu -1 299 240 206 331 150 0 chr13 83609503 83609630 -18263539 - L2 LINE L2 -4 3309 3164 3212 162 22 14 chr13 83609847 83610469 -18262700 + L1MB3 LINE L1 5550 6176 -7 191 313 50 12 chr13 83610484 83610564 -18262605 - MIR3 SINE MIR -39 169 87 184 282 174 20 chr13 83611798 83611947 -18261222 + MIR3 SINE MIR 2 173 -35 1730 146 6 62 chr13 83612989 83613310 -18259859 + AluJo SINE Alu 1 303 -9 296 281 53 26 chr13 83613323 83613437 -18259732 - L2 LINE L2 -1389 1925 1809 587 136 0 0 chr13 83613622 83613710 -18259459 - AluS SINE Alu -224 88 1 195 304 18 0 chr13 83613712 83613768 -18259401 - MER5B DNA MER1_type -115 63 7 180 302 0 0 chr13 83613784 83613837 -18259332 - MER5B DNA MER1_type -3 175 123 995 221 38 36 chr13 83613837 83614165 -18259004 + L1ME2 LINE L1 5837 6164 0 275 302 0 86 chr13 83614167 83614283 -18258886 - MER5B DNA MER1_type -72 106 1 413 310 32 37 chr13 83614383 83614570 -18258599 + MER5A DNA MER1_type 4 189 0 939 195 30 35 chr13 83615269 83615500 -18257669 + MLT1E LTR MaLR 336 565 -28 25 0 0 0 chr13 83615748 83615773 -18257396 + AT_rich Low_complexity Low_complexity 1 25 0 4158 218 60 11 chr13 83617949 83618941 -18254228 - MER45B DNA AcHobo 0 1040 1 258 32 0 0 chr13 83619527 83619558 -18253611 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 286 134 25 chr13 83620435 83620554 -18252615 + MIR SINE MIR 53 184 -78 446 255 92 33 chr13 83620810 83620963 -18252206 - MIR SINE MIR -93 169 8 785 125 0 8 chr13 83621530 83621650 -18251519 - MLT1A1 LTR MaLR -51 314 196 27 0 0 0 chr13 83621653 83621680 -18251489 + AT_rich Low_complexity Low_complexity 1 27 0 641 87 0 0 chr13 83621680 83621772 -18251397 - L1PA6 LINE L1 -4 6150 6059 2162 134 0 0 chr13 83621798 83622104 -18251065 - AluSx SINE Alu -6 306 1 252 234 138 53 chr13 83622800 83622894 -18250275 + L2 LINE L2 3179 3280 -33 1745 172 3 3 chr13 83622985 83623299 -18249870 + L1PB4 LINE L1 5842 6155 -1 366 233 35 17 chr13 83624076 83624192 -18248977 - MIR SINE MIR -70 192 75 1589 197 32 62 chr13 83624331 83624797 -18248372 - MLT1C LTR MaLR -10 457 6 293 256 116 0 chr13 83625058 83625187 -18247982 + LTR50 LTR ERVL 614 757 -38 21 57 0 0 chr13 83625267 83625302 -18247867 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr13 83625401 83625437 -18247732 + AT_rich Low_complexity Low_complexity 1 36 0 830 277 51 30 chr13 83625750 83626082 -18247087 + MLT1I LTR MaLR 3 341 -68 2107 110 24 0 chr13 83626165 83626457 -18246712 - AluSq SINE Alu -14 299 1 1413 314 107 14 chr13 83626473 83627164 -18246005 + L2 LINE L2 2000 2754 -560 565 319 94 47 chr13 83627874 83628312 -18244857 + L2 LINE L2 2762 3234 -79 2632 100 17 6 chr13 83628312 83628672 -18244497 + THE1B LTR MaLR 1 364 0 565 319 94 47 chr13 83628672 83628756 -18244413 + L2 LINE L2 3234 3313 0 345 296 162 18 chr13 83629437 83629648 -18243521 - L1 LINE L1 -2559 3587 3323 195 42 0 0 chr13 83629648 83629672 -18243497 + (CA)n Simple_repeat Simple_repeat 1 24 0 345 296 162 18 chr13 83629672 83629744 -18243425 - L1 LINE L1 -2823 3323 3263 2318 57 0 14 chr13 83630606 83630890 -18242279 + AluY SINE Alu 1 301 -10 208 0 0 0 chr13 83630890 83630913 -18242256 + (CAAAA)n Simple_repeat Simple_repeat 2 175 0 2318 57 0 14 chr13 83630913 83630924 -18242245 + AluY SINE Alu 301 311 0 207 0 0 0 chr13 83630959 83630982 -18242187 + (A)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr13 83630982 83631003 -18242166 + (CA)n Simple_repeat Simple_repeat 2 22 0 240 143 29 29 chr13 83631572 83631642 -18241527 + (TAA)n Simple_repeat Simple_repeat 1 70 0 991 248 29 21 chr13 83631674 83631912 -18241257 - MIR SINE MIR -20 242 3 273 290 28 28 chr13 83633591 83633698 -18239471 + L2 LINE L2 2247 2353 -961 309 229 0 12 chr13 83633754 83633837 -18239332 + MER53 DNA DNA 107 188 -1 206 379 64 41 chr13 83634080 83634191 -18238978 + L2 LINE L2 2645 2752 -562 469 268 18 0 chr13 83634191 83634303 -18238866 - MER81 DNA DNA 0 114 1 206 379 64 41 chr13 83634303 83634505 -18238664 + L2 LINE L2 2752 2965 -349 326 335 67 58 chr13 83634570 83634883 -18238286 + L2 LINE L2 2991 3306 -7 233 384 106 12 chr13 83634976 83635296 -18237873 + L2 LINE L2 2356 2705 -609 351 292 105 0 chr13 83635795 83635966 -18237203 + L1M4c LINE L1 1942 2130 -4254 1635 112 62 8 chr13 83636125 83636383 -18236786 - AluSp SINE Alu -41 272 1 2046 188 89 0 chr13 83637135 83637588 -18235581 + MLT1D LTR MaLR 1 617 -7 7040 156 19 67 chr13 83637589 83638639 -18234530 + L1P LINE L1 3337 4436 -1710 291 71 0 0 chr13 83638639 83638681 -18234488 + (CA)n Simple_repeat Simple_repeat 2 43 0 7040 156 19 67 chr13 83638681 83638926 -18234243 + L1P LINE L1 4436 4545 -1601 1698 143 64 0 chr13 83638926 83639192 -18233977 + AluSx SINE Alu 3 285 -27 7040 156 19 67 chr13 83639192 83639477 -18233692 + L1P LINE L1 4545 4842 -1304 413 313 54 10 chr13 83639576 83639873 -18233296 + L1ME4a LINE L1 5556 5865 -256 334 270 65 43 chr13 83640083 83640268 -18232901 - MLT1I LTR MaLR -208 201 13 351 214 45 0 chr13 83640435 83640524 -18232645 + L1ME4a LINE L1 6010 6102 -19 1760 258 36 45 chr13 83640725 83641391 -18231778 + MLT1-int LTR MaLR 1 660 -711 276 205 13 39 chr13 83641440 83641518 -18231651 + MLT1-int LTR MaLR 657 732 -639 1550 234 87 41 chr13 83641520 83642209 -18230960 - L1M4 LINE L1 -2168 3978 3258 2624 45 3 0 chr13 83642259 83642569 -18230600 - AluY SINE Alu 0 311 1 1819 143 7 7 chr13 83643503 83643783 -18229386 - AluSg SINE Alu -30 280 1 2358 126 81 2 chr13 83643954 83644350 -18228819 - MSTA LTR MaLR 0 428 2 22 0 0 0 chr13 83644624 83644646 -18228523 + AT_rich Low_complexity Low_complexity 1 22 0 2844 13 0 0 chr13 83645560 83645893 -18227276 + AluYa5 SINE Alu 1 333 0 25 51 0 0 chr13 83646279 83646318 -18226851 + AT_rich Low_complexity Low_complexity 1 39 0 1356 121 13 25 chr13 83646531 83646706 -18226463 + L1MA3 LINE L1 6060 6233 -72 1808 147 82 25 chr13 83646706 83647061 -18226108 + THE1C LTR MaLR 1 375 0 1356 121 13 25 chr13 83647061 83647124 -18226045 + L1MA3 LINE L1 6233 6295 -10 261 271 223 31 chr13 83647233 83647462 -18225707 + L2 LINE L2 2286 2558 -756 410 250 0 0 chr13 83647941 83648042 -18225127 + L1M1 LINE L1 816 1259 -6306 238 340 113 9 chr13 83648042 83648148 -18225021 - L2 LINE L2 -6 3307 3191 7668 198 76 52 chr13 83648190 83650316 -18222853 + L1M1 LINE L1 23 2097 -5468 1664 173 3 61 chr13 83650316 83650646 -18222523 + AluJb SINE Alu 2 312 0 7668 198 76 52 chr13 83650646 83650950 -18222219 + L1M1 LINE L1 2097 2392 -5173 2323 95 0 0 chr13 83650950 83651245 -18221924 + AluSx SINE Alu 1 295 -17 7668 198 76 52 chr13 83651245 83651930 -18221239 + L1M1 LINE L1 2392 3943 -3622 2387 73 0 25 chr13 83651998 83652315 -18220854 - AluY SINE Alu 0 311 3 1894 182 3 6 chr13 83652477 83652790 -18220379 + AluJo SINE Alu 1 312 0 234 243 87 0 chr13 83652843 83652946 -18220223 + HAL1 LINE L1 2094 2205 -302 261 43 106 0 chr13 83652966 83653013 -18220156 + L1MA2 LINE L1 6251 6302 -2 282 280 105 10 chr13 83653072 83653272 -18219897 + HAL1 LINE L1 2286 2504 -3 23 97 0 0 chr13 83653635 83653707 -18219462 + AT_rich Low_complexity Low_complexity 1 72 0 2193 79 0 0 chr13 83653957 83654247 -18218922 - L1PA7 LINE L1 -2 6152 5863 223 182 23 0 chr13 83654342 83654386 -18218783 + CT-rich Low_complexity Low_complexity 3 47 0 1000 102 13 0 chr13 83655179 83655336 -18217833 - L1MA5 LINE L1 -1 6299 6141 284 100 40 0 chr13 83655336 83655386 -18217783 + L1MA5 LINE L1 6063 6114 -186 26 50 0 0 chr13 83655550 83655590 -18217579 + AT_rich Low_complexity Low_complexity 1 40 0 2318 85 0 0 chr13 83655674 83655980 -18217189 - AluSc SINE Alu 0 306 1 1560 235 3 14 chr13 83656059 83656148 -18217021 + MLT1A1 LTR MaLR 12 100 -265 3972 127 48 0 chr13 83656148 83656732 -18216437 - LTR9 LTR ERV1 0 612 1 1560 235 3 14 chr13 83656732 83657000 -18216169 + MLT1A1 LTR MaLR 100 365 0 229 367 20 0 chr13 83657007 83657105 -18216064 - L2 LINE L2 -15 3298 3199 313 298 66 8 chr13 83658171 83658292 -18214877 - L1ME4a LINE L1 -28 6093 5966 336 276 51 108 chr13 83658328 83658661 -18214508 - L1ME2 LINE L1 -137 6027 5714 250 261 72 14 chr13 83658716 83658785 -18214384 + MER5C DNA MER1_type 4 76 -248 340 352 30 35 chr13 83658888 83659087 -18214082 - L1ME2 LINE L1 -472 5698 5501 4350 187 25 11 chr13 83659113 83659219 -18213950 - L1MB8 LINE L1 -7 6171 6068 2194 122 0 0 chr13 83659219 83659515 -18213654 - AluSx SINE Alu -15 297 2 4350 187 25 11 chr13 83659515 83660376 -18212793 - L1MB8 LINE L1 -110 6068 5188 21 0 0 0 chr13 83660437 83660458 -18212711 + AT_rich Low_complexity Low_complexity 1 21 0 219 267 0 0 chr13 83660472 83660558 -18212611 + (TA)n Simple_repeat Simple_repeat 1 86 0 780 202 128 7 chr13 83660570 83660852 -18212317 - L1MB8 LINE L1 -2364 3782 3467 710 344 76 18 chr13 83660836 83661574 -18211595 - L1MEc LINE L1 -5581 815 35 * 2339 103 0 13 chr13 83661825 83662163 -18211006 + AluSx SINE Alu 1 334 0 242 220 11 66 chr13 83662186 83662277 -18210892 - MER97c DNA MER1_type? -14 1076 991 319 200 0 12 chr13 83662284 83662369 -18210800 - MER97a DNA MER1_type? -208 686 603 4736 128 8 65 chr13 83662371 83663303 -18209866 - L1PB4 LINE L1 -7 6149 5272 * 38142 47 11 1 chr13 83663301 83669096 -18204073 - L1PA5 LINE L1 0 6469 612 336 104 0 0 chr13 83669081 83669129 -18204040 - L1PA5 LINE L1 -6365 96 49 * 1173 223 29 3 chr13 83669135 83669481 -18203688 - L1PB4 LINE L1 -864 5282 4928 1602 249 72 40 chr13 83669481 83669708 -18203461 - MER97c DNA MER1_type? -485 605 387 1766 137 8 0 chr13 83669708 83669970 -18203199 + AluSq SINE Alu 49 312 -1 1602 249 72 40 chr13 83669970 83670076 -18203093 - MER97c DNA MER1_type? -703 387 286 1497 184 33 3 chr13 83670076 83670381 -18202788 + L1MA7 LINE L1 5968 6281 -10 1602 249 72 40 chr13 83670381 83670629 -18202540 - MER97c DNA MER1_type? -804 286 4 32 0 0 0 chr13 83671165 83671197 -18201972 + AT_rich Low_complexity Low_complexity 1 32 0 315 216 45 54 chr13 83671206 83671317 -18201852 - HAL1b LINE L1 -7 1341 1232 414 232 77 18 chr13 83671318 83671486 -18201683 - HAL1b LINE L1 -193 1155 978 529 157 29 10 chr13 83671497 83671599 -18201570 + U13 snRNA snRNA 1 104 0 847 279 102 33 chr13 83671752 83671958 -18201211 - HAL1b LINE L1 -582 766 576 628 245 22 54 chr13 83671958 83672142 -18201027 + MER45A DNA AcHobo 1 178 0 847 279 102 33 chr13 83672142 83672426 -18200743 - HAL1b LINE L1 -772 576 242 220 267 244 0 chr13 83672600 83672690 -18200479 + L2 LINE L2 1693 1804 -1510 350 297 51 29 chr13 83672693 83672868 -18200301 + LTR33A LTR ERVL 342 520 -3 21 0 0 0 chr13 83673043 83673064 -18200105 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr13 83673401 83673434 -18199735 + (TG)n Simple_repeat Simple_repeat 2 34 0 46 33 0 0 chr13 83673849 83673909 -18199260 + AT_rich Low_complexity Low_complexity 1 60 0 322 287 113 67 chr13 83674071 83674255 -18198914 - L1MC4a LINE L1 -1896 5912 5738 2678 126 7 7 chr13 83674255 83674701 -18198468 + L1MA5A LINE L1 5852 6297 0 322 287 113 67 chr13 83674701 83674993 -18198176 - L1MC4a LINE L1 -2070 5738 5414 1616 329 71 48 chr13 83675148 83675876 -18197293 - L2 LINE L2 0 3313 2603 2332 88 0 7 chr13 83675876 83676172 -18196997 - AluY SINE Alu -17 294 1 1616 329 71 48 chr13 83676172 83676308 -18196861 - L2 LINE L2 -710 2603 2472 1999 145 86 22 chr13 83676308 83676714 -18196455 - MSTB1 LTR MaLR 0 432 1 1616 329 71 48 chr13 83676714 83677164 -18196005 - L2 LINE L2 -841 2472 1967 23 68 0 0 chr13 83677223 83677267 -18195902 + AT_rich Low_complexity Low_complexity 1 44 0 251 272 82 43 chr13 83677333 83677565 -18195604 - L1MC4a LINE L1 -1095 5051 4811 285 206 0 29 chr13 83677611 83677679 -18195490 - MLT1K LTR MaLR -344 244 179 2733 218 36 14 chr13 83678384 83679022 -18194147 - MER82 DNA MER2_type -1 652 1 567 301 6 6 chr13 83680694 83680857 -18192312 + MIR SINE MIR 48 210 -52 538 280 23 46 chr13 83680880 83681141 -18192028 - MER112 DNA MER1_type 0 256 2 1008 267 199 68 chr13 83683761 83683884 -18189285 + L2 LINE L2 11 116 -3198 1712 159 13 33 chr13 83683884 83684185 -18188984 + AluJo SINE Alu 1 295 -17 1008 267 199 68 chr13 83684185 83685154 -18188015 + L2 LINE L2 116 1247 -2067 1053 276 89 24 chr13 83685154 83685720 -18187449 - L1MB7 LINE L1 -288 5896 5254 1974 174 0 0 chr13 83685739 83686050 -18187119 - MER7A DNA MER2_type 0 346 38 337 274 164 25 chr13 83686059 83686260 -18186909 - L1MB7 LINE L1 -913 5233 5005 192 77 0 0 chr13 83686913 83686939 -18186230 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 243 261 0 43 chr13 83687208 83687300 -18185869 - L1MC4 LINE L1 -1302 6740 6653 21 0 0 0 chr13 83688001 83688022 -18185147 + AT_rich Low_complexity Low_complexity 1 21 0 1004 299 50 17 chr13 83688207 83688788 -18184381 - L1MEc LINE L1 -4730 1666 1067 362 285 44 35 chr13 83688761 83688989 -18184180 - L1MEc LINE L1 -4931 1274 1045 * 1962 105 28 74 chr13 83689867 83690191 -18182978 + AluSx SINE Alu 1 309 -3 195 42 0 0 chr13 83690975 83690999 -18182170 + (TC)n Simple_repeat Simple_repeat 1 24 0 2303 55 58 3 chr13 83692019 83692311 -18180858 + AluY SINE Alu 2 309 -2 402 286 214 11 chr13 83692953 83693131 -18180038 - MIR SINE MIR 0 262 49 2385 126 52 10 chr13 83693158 83693564 -18179605 - MSTA LTR MaLR 0 428 6 336 196 0 168 chr13 83694025 83694089 -18179080 - MER63D DNA MER1_type -1 1060 987 2495 123 37 0 chr13 83694089 83694471 -18178698 + L1MA4 LINE L1 5905 6300 0 1398 99 6 0 chr13 83694475 83694685 -18178484 + L1PA8 LINE L1 5983 6172 0 336 196 0 168 chr13 83694685 83694722 -18178447 - MER63D DNA MER1_type -77 984 972 337 128 0 0 chr13 83694722 83694793 -18178376 - Alu SINE Alu 0 304 234 2522 199 52 59 chr13 83694797 83695116 -18178053 - MER63D DNA MER1_type -80 981 661 973 274 18 0 chr13 83695116 83695335 -18177834 + MER58A DNA MER1_type 1 223 -1 2522 199 52 59 chr13 83695335 83695692 -18177477 - MER63D DNA MER1_type -400 661 310 1160 176 34 8 chr13 83695694 83695932 -18177237 - MER63D DNA MER1_type -684 246 3 654 299 139 22 chr13 83696208 83696610 -18176559 - MLT1J2 LTR MaLR 0 450 2 616 258 48 18 chr13 83698064 83698231 -18174938 + L1ME1 LINE L1 5978 6149 -17 1483 159 80 3 chr13 83698350 83698651 -18174518 + MER33 DNA MER1_type 1 324 0 1096 198 13 53 chr13 83698884 83699111 -18174058 + MER20 DNA MER1_type 1 218 -1 687 280 111 28 chr13 83700511 83700872 -18172297 - MARNA DNA Mariner -26 560 170 1447 296 33 4 chr13 83700877 83701337 -18171832 + L1ME1 LINE L1 12 484 -5939 534 253 41 6 chr13 83701413 83701583 -18171586 + L1ME1 LINE L1 2494 2669 -4453 1024 229 24 4 chr13 83701604 83701857 -18171312 + L1ME1 LINE L1 3598 3855 -3086 1138 197 38 45 chr13 83701860 83702124 -18171045 - MER58B DNA MER1_type 0 341 80 2651 234 69 51 chr13 83702135 83702875 -18170294 + L1ME1 LINE L1 5374 6099 -862 1762 160 19 22 chr13 83702875 83703187 -18169982 + AluJb SINE Alu 1 311 -1 2651 234 69 51 chr13 83703187 83703328 -18169841 + L1ME1 LINE L1 6099 6236 -725 1800 134 36 4 chr13 83703328 83703623 -18169546 + AluSx SINE Alu 1 304 0 2651 234 69 51 chr13 83703623 83704300 -18168869 + L1ME1 LINE L1 6236 6956 -5 2109 139 0 0 chr13 83704415 83704709 -18168460 + AluSx SINE Alu 1 294 -18 261 163 0 0 chr13 83705230 83705279 -18167890 + (TG)n Simple_repeat Simple_repeat 2 50 0 206 247 25 86 chr13 83705666 83705747 -18167422 - MER5A DNA MER1_type -47 142 67 1098 133 37 0 chr13 83705921 83706109 -18167060 + L1MA4 LINE L1 5858 6052 -248 289 217 0 0 chr13 83706288 83706353 -18166816 - L1ME LINE L1 -354 5808 5741 234 206 27 14 chr13 83706350 83706423 -18166746 - L1ME LINE L1 -834 5330 5257 * 1450 125 28 0 chr13 83706459 83706704 -18166465 + L1MA4 LINE L1 6040 6299 -1 222 279 74 49 chr13 83707083 83707205 -18165964 - MER5A DNA MER1_type -16 173 49 * 302 296 61 35 chr13 83707098 83707213 -18165956 + MER5A DNA MER1_type 44 161 -28 1678 171 27 17 chr13 83707224 83707516 -18165653 - AluJo SINE Alu -6 306 12 1021 206 48 0 chr13 83708268 83708477 -18164692 - MER20 DNA MER1_type 0 219 1 1849 141 30 16 chr13 83709109 83709414 -18163755 + AluSx SINE Alu 4 312 0 854 262 128 29 chr13 83709713 83710158 -18163011 - L1ME3 LINE L1 -205 5957 5421 2417 121 40 0 chr13 83710158 83710506 -18162663 + THE1B LTR MaLR 3 364 0 854 262 128 29 chr13 83710506 83710655 -18162514 - L1ME3 LINE L1 -741 5421 5288 306 0 0 0 chr13 83710725 83710759 -18162410 + (TG)n Simple_repeat Simple_repeat 2 35 0 587 286 26 56 chr13 83710832 83711101 -18162068 - MLT1J LTR MaLR -248 263 3 338 263 206 32 chr13 83711223 83711656 -18161513 - L1ME3 LINE L1 -1330 4816 4309 1672 68 0 0 chr13 83711674 83711879 -18161290 - L1PA14 LINE L1 0 6161 5957 9503 55 7 0 chr13 83712224 83714111 -18159058 - L1PA6 LINE L1 -16 6138 4243 3011 193 15 20 chr13 83716053 83716666 -18156503 - L1MB8 LINE L1 -43 6135 5526 269 279 0 0 chr13 83716667 83716728 -18156441 + L2 LINE L2 3244 3304 -9 249 33 0 0 chr13 83717036 83717066 -18156103 + (TC)n Simple_repeat Simple_repeat 1 30 0 2129 198 76 0 chr13 83717117 83717512 -18155657 - MSTB LTR MaLR 0 426 2 2628 109 34 14 chr13 83717690 83718047 -18155122 + THE1B LTR MaLR 1 364 0 2875 217 44 39 chr13 83718332 83719043 -18154126 - MER21B LTR ERV1 -52 811 98 354 242 0 0 chr13 83719093 83719159 -18154010 - MER21B LTR ERV1 -773 90 25 345 47 0 0 chr13 83719162 83719205 -18153964 + (TA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr13 83719205 83719235 -18153934 + (T)n Simple_repeat Simple_repeat 1 30 0 538 257 7 20 chr13 83719511 83719659 -18153510 + L2 LINE L2 3167 3312 -1 2139 156 35 24 chr13 83719909 83720280 -18152889 - THE1C LTR MaLR 0 375 1 185 147 0 0 chr13 83720534 83720568 -18152601 - L2 LINE L2 0 3272 3239 227 200 0 13 chr13 83720962 83721037 -18152132 + (TAG)n Simple_repeat Simple_repeat 1 74 0 3418 104 23 0 chr13 83721078 83721521 -18151648 - MLT2A2 LTR ERVL 0 453 1 2335 109 0 0 chr13 83721770 83722074 -18151095 + AluSq SINE Alu 1 304 -9 294 373 7 7 chr13 83723674 83723824 -18149345 - MIR3 SINE MIR -15 193 44 249 384 16 22 chr13 83723805 83723990 -18149179 + MIR SINE MIR 16 199 -63 * 183 293 0 0 chr13 83724507 83724565 -18148604 - MIR SINE MIR -109 153 96 204 175 79 63 chr13 83724871 83724934 -18148235 + MER5A DNA MER1_type 119 182 -7 * 326 397 0 7 chr13 83724930 83725076 -18148093 + L3 LINE CR1 1215 1359 -218 563 128 0 35 chr13 83725594 83725680 -18147489 - FRAM SINE Alu -31 145 63 1586 115 55 0 chr13 83725764 83725982 -18147187 + MER30 DNA MER1_type 1 230 0 207 244 0 0 chr13 83726889 83726930 -18146239 + C-rich Low_complexity Low_complexity 4 44 0 243 61 0 0 chr13 83727055 83727088 -18146081 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 347 325 16 8 chr13 83727275 83727398 -18145771 + MIR SINE MIR 17 140 -68 565 224 13 0 chr13 83727474 83727630 -18145539 + CT-rich Low_complexity Low_complexity 2 159 0 321 150 0 190 chr13 83729846 83729946 -18143223 + MER63A DNA MER1_type 1 81 0 2229 107 10 0 chr13 83729949 83730371 -18142798 - AluSp SINE Alu 0 425 1 634 280 0 0 chr13 83730372 83730515 -18142654 + MER63A DNA MER1_type 68 210 0 191 305 55 94 chr13 83732297 83732425 -18140744 + L2 LINE L2 2607 2729 -585 26 30 0 0 chr13 83733005 83733038 -18140131 + AT_rich Low_complexity Low_complexity 1 33 0 287 286 11 33 chr13 83733116 83733207 -18139962 + LTR33A LTR ERVL 435 523 0 910 176 7 14 chr13 83735832 83736003 -18137166 + FRAM SINE Alu 1 170 0 343 325 74 26 chr13 83736175 83736406 -18136763 + MIR SINE MIR 11 252 -10 248 206 143 0 chr13 83737161 83737224 -18135945 - MIR3 SINE MIR 0 208 137 1062 168 56 0 chr13 83737414 83737593 -18135576 - MER5A DNA MER1_type 0 189 1 500 290 7 14 chr13 83737609 83737754 -18135415 + MER5B DNA MER1_type 4 147 -31 407 241 0 0 chr13 83737818 83737901 -18135268 - MER5A DNA MER1_type -89 100 18 2079 129 10 10 chr13 83738080 83738390 -18134779 + AluSx SINE Alu 1 310 -2 350 339 69 0 chr13 83740730 83740860 -18132309 + MIR SINE MIR 20 158 -104 502 225 168 12 chr13 83741066 83741239 -18131930 - MLT1J1 LTR MaLR 0 446 247 4819 122 30 12 chr13 83741292 83742032 -18131137 - MER4D LTR ERV1 -2 901 149 1022 176 136 0 chr13 83742136 83742335 -18130834 - LTR8A LTR ERV1 -501 226 1 232 342 105 13 chr13 83742342 83742418 -18130751 - MIR SINE MIR -156 106 24 542 287 130 14 chr13 83742492 83742715 -18130454 - MIR SINE MIR -12 250 2 2131 112 84 35 chr13 83743038 83743385 -18129784 + THE1B LTR MaLR 1 364 0 180 321 107 0 chr13 83744134 83744218 -18128951 + L2 LINE L2 3201 3293 -20 242 302 71 82 chr13 83744841 83745096 -18128073 + L2 LINE L2 2853 3104 -168 876 283 77 69 chr13 83745503 83746124 -18127045 + HAL1 LINE L1 24 649 -1858 1256 243 92 21 chr13 83746219 83746556 -18126613 + LTR16B LTR ERVL 101 461 -3 1079 338 54 22 chr13 83746560 83747137 -18126032 + HERV16 LTR ERVL 3 597 -4399 1070 279 77 20 chr13 83747259 83747649 -18125520 + HERV16 LTR ERVL 742 1153 -3843 826 256 102 38 chr13 83748030 83748220 -18124949 + HAL1 LINE L1 798 974 -1533 1988 152 0 10 chr13 83748220 83748530 -18124639 + AluSx SINE Alu 1 307 -5 826 256 102 38 chr13 83748530 83748839 -18124330 + HAL1 LINE L1 974 1329 -1178 198 0 0 0 chr13 83748989 83749011 -18124158 + (TC)n Simple_repeat Simple_repeat 1 22 0 1002 188 46 34 chr13 83749022 83749261 -18123908 - MLT1D LTR MaLR -263 242 1 24 0 0 0 chr13 83749951 83749975 -18123194 + AT_rich Low_complexity Low_complexity 1 24 0 321 136 51 0 chr13 83751853 83751912 -18121257 + L1MC1 LINE L1 6272 6333 0 225 254 32 0 chr13 83752138 83752201 -18120968 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 398 279 96 50 chr13 83752787 83753006 -18120163 - MIR SINE MIR 0 262 34 600 195 0 57 chr13 83753953 83754076 -18119093 - FLAM_A SINE Alu -21 121 6 190 235 26 130 chr13 83754612 83754727 -18118442 + L2 LINE L2 2954 3056 -257 525 280 53 0 chr13 83754900 83755050 -18118119 + MIR SINE MIR 2 159 -103 387 250 29 10 chr13 83755805 83755909 -18117260 - MER103 DNA DNA -45 121 16 2303 235 57 14 chr13 83757628 83758186 -18114983 + MER119 DNA MER1_type 1 582 -1 202 338 13 0 chr13 83758286 83758363 -18114806 - MIR SINE MIR 0 262 185 200 333 13 0 chr13 83759190 83759265 -18113904 + (TATG)n Simple_repeat Simple_repeat 3 78 0 213 107 30 84 chr13 83759274 83759405 -18113764 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 * 330 132 69 25 chr13 83759374 83759533 -18113636 + (TA)n Simple_repeat Simple_repeat 2 167 0 476 331 126 47 chr13 83759621 83760486 -18112683 - L2 LINE L2 0 3272 2275 2319 79 0 0 chr13 83760486 83760807 -18112362 + AluY SINE Alu 1 321 0 476 331 126 47 chr13 83760807 83760863 -18112306 - L2 LINE L2 -997 2275 2225 235 200 14 14 chr13 83761078 83761148 -18112021 + GA-rich Low_complexity Low_complexity 3 72 0 242 250 0 102 chr13 83761190 83761278 -18111891 - L2 LINE L2 0 3272 3194 609 251 141 0 chr13 83761401 83761564 -18111605 + MER5A DNA MER1_type 4 189 0 688 369 42 26 chr13 83761660 83761761 -18111408 - L2 LINE L2 -475 2839 2741 1663 199 79 28 chr13 83761761 83762117 -18111052 - MLT1A2 LTR MaLR 0 374 1 688 369 42 26 chr13 83762117 83762473 -18110696 - L2 LINE L2 -573 2741 2375 245 295 26 0 chr13 83762523 83762601 -18110568 - MIR SINE MIR 0 262 183 270 0 0 0 chr13 83763727 83763757 -18109412 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 220 263 92 13 chr13 83764755 83764831 -18108338 - MIR3 SINE MIR -6 202 121 1174 160 186 8 chr13 83765170 83765407 -18107762 + AluYa5 SINE Alu 33 311 0 2120 136 0 10 chr13 83765892 83766202 -18106967 + AluSx SINE Alu 1 307 -5 206 292 66 35 chr13 83766489 83766654 -18106515 - MIR SINE MIR -55 207 42 21 0 0 0 chr13 83766853 83766874 -18106295 + AT_rich Low_complexity Low_complexity 1 21 0 281 288 26 124 chr13 83767061 83767214 -18105955 - MER91C DNA MER1_type 0 140 3 631 141 94 8 chr13 83767753 83767881 -18105288 - MER103 DNA DNA -18 148 10 3340 91 52 2 chr13 83767883 83768325 -18104844 + THE1B-int LTR MaLR 1117 1580 0 2445 104 48 28 chr13 83768327 83768682 -18104487 + THE1B LTR MaLR 3 364 0 414 233 7 20 chr13 83769021 83769161 -18104008 - MIR SINE MIR -65 143 20 267 181 24 24 chr13 83769191 83769274 -18103895 + (TTA)n Simple_repeat Simple_repeat 1 83 0 278 285 146 19 chr13 83769283 83769441 -18103728 + MIR SINE MIR 22 199 -63 1094 150 5 26 chr13 83770575 83770768 -18102401 - AluSx SINE Alu -7 305 117 38 0 0 0 chr13 83770768 83770806 -18102363 + AT_rich Low_complexity Low_complexity 1 38 0 1867 110 8 4 chr13 83770806 83771061 -18102108 - AluSc SINE Alu -19 290 35 865 131 46 8 chr13 83771061 83771191 -18101978 - AluSx SINE Alu -178 135 1 747 112 0 0 chr13 83772001 83772117 -18101052 + (TCCA)n Simple_repeat Simple_repeat 1 116 0 681 342 72 16 chr13 83772121 83772495 -18100674 - L2 LINE L2 -2 3311 2917 484 269 264 5 chr13 83773464 83773657 -18099512 - MIR SINE MIR -18 244 2 822 209 74 29 chr13 83773706 83773950 -18099219 - L1MC5 LINE L1 -64 7897 7643 196 287 229 8 chr13 83774159 83774281 -18098888 + MIR3 SINE MIR 9 157 -51 219 204 0 0 chr13 83774504 83774553 -18098616 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 1324 289 36 58 chr13 83775501 83776168 -18097001 + MLT2F LTR ERVL 12 663 0 267 278 71 48 chr13 83776179 83776305 -18096864 - MIR SINE MIR -128 134 6 2025 263 82 18 chr13 83776470 83777403 -18095766 - L2 LINE L2 0 3313 2317 1258 188 67 156 chr13 83777403 83777967 -18095202 - MLT2B1 LTR ERVL -2 518 5 2025 263 82 18 chr13 83777967 83778037 -18095132 - L2 LINE L2 -996 2317 2253 21 0 0 0 chr13 83778746 83778767 -18094402 + AT_rich Low_complexity Low_complexity 1 21 0 494 265 60 24 chr13 83779413 83779579 -18093590 + LTR33 LTR ERVL 313 484 -37 30954 38 12 1 chr13 83779680 83784201 -18088968 - L1PA3 LINE L1 -141 6014 1439 222 118 0 0 chr13 83784648 83784682 -18088487 + (CA)n Simple_repeat Simple_repeat 2 35 0 397 238 149 42 chr13 83785077 83785245 -18087924 + MER5A DNA MER1_type 4 189 0 2115 142 158 11 chr13 83786125 83786498 -18086671 - MSTA LTR MaLR 0 428 1 632 173 73 62 chr13 83787977 83788156 -18085013 + MLT1C LTR MaLR 134 314 -153 1988 146 0 16 chr13 83788203 83788518 -18084651 - AluJb SINE Alu 0 312 3 258 214 107 48 chr13 83788598 83788682 -18084487 + L2 LINE L2 3225 3313 0 425 123 15 0 chr13 83789136 83789201 -18083968 + AluS SINE Alu 2 67 -246 456 293 61 22 chr13 83790086 83790267 -18082902 + LTR33 LTR ERVL 313 500 -21 248 323 120 15 chr13 83791161 83791294 -18081875 - L2 LINE L2 -4 3268 3122 3156 153 2 17 chr13 83791626 83792149 -18081020 - MER41B LTR ERV1 -120 515 1 843 315 79 41 chr13 83792282 83792867 -18080302 - L2 LINE L2 0 3313 2710 357 346 52 0 chr13 83792875 83793011 -18080158 + L2 LINE L2 2550 2692 -622 424 265 181 12 chr13 83793011 83793177 -18079992 - MIR SINE MIR -53 209 16 2337 118 21 12 chr13 83795128 83795468 -18077701 - MER61A LTR ERV1 0 343 1 321 301 15 0 chr13 83796674 83796880 -18076289 + (CATATA)n Simple_repeat Simple_repeat 1 209 0 747 195 16 0 chr13 83797187 83797315 -18075854 + FLAM_C SINE Alu 1 130 -3 2432 43 7 7 chr13 83798455 83798755 -18074414 - AluY SINE Alu -11 300 1 270 0 0 0 chr13 83798757 83798787 -18074382 + (T)n Simple_repeat Simple_repeat 1 30 0 422 303 40 13 chr13 83799973 83800125 -18073044 - MIR SINE MIR -88 174 19 263 392 10 0 chr13 83800552 83800649 -18072520 + MER5B DNA MER1_type 1 98 -80 292 146 55 18 chr13 83801882 83801992 -18071177 + (CA)n Simple_repeat Simple_repeat 2 115 0 785 274 95 19 chr13 83801992 83802317 -18070852 + L2 LINE L2 2964 3313 0 749 246 89 0 chr13 83803317 83803520 -18069649 - MIR SINE MIR -2 260 40 380 270 111 27 chr13 83803700 83803891 -18069278 + MIR SINE MIR 7 214 -48 21 0 0 0 chr13 83805273 83805294 -18067875 + AT_rich Low_complexity Low_complexity 1 21 0 256 25 0 50 chr13 83806064 83806104 -18067065 + (GAAA)n Simple_repeat Simple_repeat 1 38 0 390 184 0 0 chr13 83806104 83806180 -18066989 + GA-rich Low_complexity Low_complexity 4 79 0 228 209 0 0 chr13 83807945 83807988 -18065181 - MIR3 SINE MIR -3 205 163 248 308 123 57 chr13 83808962 83809426 -18063743 - L2 LINE L2 -56 3216 2722 1703 173 21 72 chr13 83809473 83809860 -18063309 + MLT1B LTR MaLR 22 388 -2 419 321 27 38 chr13 83810326 83810510 -18062659 + MIR3 SINE MIR 23 204 -4 2534 74 0 0 chr13 83810603 83810913 -18062256 - AluY SINE Alu -1 310 1 180 0 0 0 chr13 83810967 83810987 -18062182 + (T)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr13 83811833 83811862 -18061307 + AT_rich Low_complexity Low_complexity 1 29 0 431 241 45 9 chr13 83812391 83812503 -18060666 + L1 LINE L1 3841 3956 -2190 1256 260 49 35 chr13 83814200 83814760 -18058409 + L2 LINE L2 2738 3312 -1 257 235 17 143 chr13 83814995 83815114 -18058055 + MIR SINE MIR 48 151 -111 22 80 0 0 chr13 83815174 83815224 -18057945 + AT_rich Low_complexity Low_complexity 1 50 0 219 291 109 45 chr13 83815518 83815628 -18057541 - L2 LINE L2 0 3272 3156 1801 278 119 14 chr13 83816155 83817164 -18056005 + L2 LINE L2 2203 3312 -1 266 277 85 11 chr13 83818107 83818201 -18054968 + L2 LINE L2 3159 3259 -13 991 246 8 20 chr13 83818207 83818451 -18054718 + MIR SINE MIR 21 261 -1 673 269 82 19 chr13 83818473 83818681 -18054488 + MIR SINE MIR 8 228 -34 563 279 13 7 chr13 83820294 83820448 -18052721 - MLT1C LTR MaLR 0 467 313 310 104 0 0 chr13 83820442 83820490 -18052679 - Alu SINE Alu -3 299 252 * 24 0 0 0 chr13 83821229 83821253 -18051916 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr13 83823084 83823108 -18050061 + (A)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr13 83825496 83825533 -18047636 + (A)n Simple_repeat Simple_repeat 1 37 0 224 272 122 89 chr13 83826554 83826734 -18046435 - MIR SINE MIR -31 231 46 2319 110 0 3 chr13 83826976 83827285 -18045884 - AluSx SINE Alu -4 308 1 355 243 35 47 chr13 83827883 83828052 -18045117 + Charlie7 DNA MER1_type 2440 2606 -6 1820 121 0 0 chr13 83828471 83828719 -18044450 + AluSp SINE Alu 1 248 -65 428 222 178 22 chr13 83829704 83829839 -18043330 - MER5A DNA MER1_type 0 189 34 241 269 87 27 chr13 83830870 83831012 -18042157 - MIR3 SINE MIR -13 249 64 360 0 0 0 chr13 83831307 83831347 -18041822 + (TG)n Simple_repeat Simple_repeat 1 40 0 450 0 0 0 chr13 83831582 83831632 -18041537 + (TA)n Simple_repeat Simple_repeat 2 51 0 1810 29 0 14 chr13 83831632 83831834 -18041335 - L1PA5 LINE L1 -8 6146 5946 515 328 112 7 chr13 83832461 83832766 -18040403 - L3 LINE CR1 -13 1564 1228 247 313 31 10 chr13 83832781 83832877 -18040292 - L3 LINE CR1 -550 1027 930 480 257 59 21 chr13 83834818 83835005 -18038164 + L1ME3A LINE L1 5977 6170 0 298 222 16 0 chr13 83836023 83836086 -18037083 - L2 LINE L2 -214 3058 2995 269 401 15 0 chr13 83836163 83836295 -18036874 - L2 LINE L2 -494 2820 2687 201 191 0 64 chr13 83837799 83837846 -18035323 + L2 LINE L2 3262 3305 -8 324 125 18 18 chr13 83838515 83838571 -18034598 + MER5A DNA MER1_type 47 102 -87 318 323 0 11 chr13 83838571 83838664 -18034505 - MER5A DNA MER1_type -63 126 35 541 280 86 16 chr13 83838683 83838869 -18034300 + MIR SINE MIR 7 205 -57 216 86 0 0 chr13 83839440 83839475 -18033694 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 242 273 26 13 chr13 83841745 83841822 -18031347 - L2 LINE L2 0 3272 3195 533 249 32 42 chr13 83843661 83843850 -18029319 + MER117 DNA MER1_type 11 197 0 303 227 76 61 chr13 83844393 83844525 -18028644 - MIR SINE MIR -21 241 108 315 0 0 0 chr13 83844731 83844766 -18028403 + (CA)n Simple_repeat Simple_repeat 1 35 0 23 54 0 0 chr13 83845599 83845636 -18027533 + AT_rich Low_complexity Low_complexity 1 37 0 275 139 0 0 chr13 83846558 83846601 -18026568 - L1MC4 LINE L1 -1342 6700 6658 1801 105 45 52 chr13 83846602 83846888 -18026281 - AluSx SINE Alu -26 286 3 576 299 5 5 chr13 83847959 83848156 -18025013 - L1ME4a LINE L1 -292 5829 5633 267 313 77 60 chr13 83848171 83848637 -18024532 - HAL1b LINE L1 -763 585 112 1986 107 11 0 chr13 83849588 83849868 -18023301 + L1MA3 LINE L1 6023 6305 0 2921 16 0 0 chr13 83850288 83850606 -18022563 - AluYb8 SINE Alu 0 318 1 340 289 49 14 chr13 83850619 83850761 -18022408 + L2 LINE L2 3163 3309 -4 1094 256 45 27 chr13 83850806 83851142 -18022027 - MER93a LTR ERV1 0 402 61 336 292 150 18 chr13 83851264 83851377 -18021792 + L2 LINE L2 3145 3272 0 2146 78 0 133 chr13 83852927 83853288 -18019881 + AluSq SINE Alu 1 313 0 1476 81 54 14 chr13 83853371 83853594 -18019575 + L1MA5A LINE L1 6036 6267 -30 1957 236 107 94 chr13 83854160 83855221 -18017948 - L2 LINE L2 -260 3053 1990 686 260 95 21 chr13 83855339 83855581 -18017588 + Charlie8 DNA MER1_type 1 260 -2157 181 258 236 22 chr13 83855733 83855822 -18017347 - MIR SINE MIR -80 128 21 1461 142 58 86 chr13 83856366 83856691 -18016478 + MLT1C LTR MaLR 5 320 -147 608 191 56 16 chr13 83856793 83856919 -18016250 + MLT1C LTR MaLR 337 467 0 249 254 119 0 chr13 83858094 83858161 -18015008 - L2 LINE L2 -23 3249 3175 1708 190 0 10 chr13 83858623 83858933 -18014236 - AluJo SINE Alu -5 307 1 353 315 160 17 chr13 83859077 83859258 -18013911 + MIR SINE MIR 35 241 -21 487 189 81 0 chr13 83859702 83859813 -18013356 + MER91C DNA MER1_type 20 139 -1 1410 261 42 34 chr13 83859859 83860481 -18012688 - L2 LINE L2 -8 3305 2687 372 294 56 38 chr13 83861626 83861786 -18011383 - MIR SINE MIR -77 185 23 348 267 95 26 chr13 83862028 83862144 -18011025 - MIR SINE MIR -114 148 25 2147 95 11 3 chr13 83862725 83863008 -18010161 - AluSg SINE Alu -4 306 22 1887 160 58 50 chr13 83863346 83863392 -18009777 + MLT1A1 LTR MaLR 1 45 -320 2231 126 0 0 chr13 83863392 83863693 -18009476 + AluSx SINE Alu 1 301 -11 1887 160 58 50 chr13 83863693 83864008 -18009161 + MLT1A1 LTR MaLR 45 365 0 429 335 60 20 chr13 83864113 83864361 -18008808 + MIR SINE MIR 5 262 0 1794 147 50 66 chr13 83864532 83864913 -18008256 + THE1C LTR MaLR 1 375 0 270 302 86 9 chr13 83866209 83866325 -18006844 + L2 LINE L2 3188 3312 -1 467 293 181 5 chr13 83866370 83866575 -18006594 - MIR SINE MIR -12 250 10 1980 138 0 45 chr13 83866645 83866956 -18006213 - AluSx SINE Alu -15 297 1 309 279 0 0 chr13 83867824 83867953 -18005216 + (CA)n Simple_repeat Simple_repeat 2 130 0 1675 284 55 14 chr13 83868184 83868751 -18004418 + MLT1E LTR MaLR 4 593 0 391 260 71 39 chr13 83868896 83869023 -18004146 + MIR3 SINE MIR 69 199 -9 292 273 11 0 chr13 83869148 83869236 -18003933 - MIR SINE MIR -122 140 52 336 102 0 0 chr13 83869310 83869359 -18003810 + (GA)n Simple_repeat Simple_repeat 2 50 0 362 371 26 33 chr13 83869747 83869898 -18003271 + L2 LINE L2 3123 3272 0 368 311 37 62 chr13 83871717 83871878 -18001291 + MIR3 SINE MIR 31 187 -21 3404 166 57 13 chr13 83872032 83872628 -18000541 - LTR26E LTR ERV1 0 622 1 581 130 0 137 chr13 83872838 83872984 -18000185 + MER4D LTR ERV1 19 144 -728 264 312 76 44 chr13 83873152 83873626 -17999543 - L1M4 LINE L1 -1524 4622 4134 2035 124 34 0 chr13 83874632 83874923 -17998246 - AluSx SINE Alu -11 301 1 22 56 0 0 chr13 83874929 83874965 -17998204 + AT_rich Low_complexity Low_complexity 1 36 0 311 363 8 0 chr13 83876198 83876322 -17996847 - MIR3 SINE MIR -51 157 33 26 30 0 0 chr13 83877074 83877107 -17996062 + AT_rich Low_complexity Low_complexity 1 33 0 189 74 0 0 chr13 83879141 83879168 -17994001 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr13 83879275 83879304 -17993865 + AT_rich Low_complexity Low_complexity 1 29 0 196 340 47 38 chr13 83880411 83880517 -17992652 - MIR3 SINE MIR -1 207 101 203 161 0 0 chr13 83880614 83880645 -17992524 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1169 271 134 21 chr13 83880648 83881390 -17991779 - L2 LINE L2 -6 3307 2468 1870 104 12 95 chr13 83883496 83883823 -17989346 - AluSx SINE Alu -12 300 1 382 303 43 31 chr13 83884182 83884344 -17988825 + MER20B DNA MER1_type 7 170 -613 2179 115 0 0 chr13 83884366 83884654 -17988515 - AluSx SINE Alu -24 288 1 1030 222 109 59 chr13 83884669 83884741 -17988428 + MER20B DNA MER1_type 287 354 -429 2293 81 0 53 chr13 83884741 83885062 -17988107 - AluY SINE Alu -6 305 2 1030 222 109 59 chr13 83885062 83885449 -17987720 + MER20B DNA MER1_type 354 769 -14 221 248 155 41 chr13 83886524 83886622 -17986547 - MIR SINE MIR -73 135 47 27 22 0 22 chr13 83886670 83886696 -17986473 + AT_rich Low_complexity Low_complexity 1 27 -17 2228 119 0 0 chr13 83886696 83886998 -17986171 + AluSx SINE Alu 1 302 -10 27 22 0 22 chr13 83886998 83887016 -17986153 + AT_rich Low_complexity Low_complexity 27 44 0 40 21 0 0 chr13 83887446 83887493 -17985676 + AT_rich Low_complexity Low_complexity 1 47 0 551 174 0 219 chr13 83888674 83888839 -17984330 - MER5A DNA MER1_type 0 189 92 1917 117 10 27 chr13 83888839 83889138 -17984031 - AluSx SINE Alu -18 294 1 551 174 0 219 chr13 83889138 83889214 -17983955 - MER5A DNA MER1_type -97 92 1 316 256 84 101 chr13 83889424 83889662 -17983507 - L2 LINE L2 -6 3307 3074 299 295 77 51 chr13 83890730 83890875 -17982294 - MIR SINE MIR -65 143 31 1483 184 82 25 chr13 83890924 83891289 -17981880 - Charlie5 DNA MER1_type 0 2624 2239 578 197 16 8 chr13 83891296 83891418 -17981751 - Charlie5 DNA MER1_type -2489 123 1 2167 107 43 0 chr13 83891845 83892144 -17981025 - AluSx SINE Alu 0 312 1 180 0 0 0 chr13 83892160 83892180 -17980989 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 185 81 0 27 chr13 83892182 83892219 -17980950 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 6580 57 15 41 chr13 83892219 83893373 -17979796 - L1PA8A LINE L1 -29 6102 4961 684 155 106 0 chr13 83893433 83893575 -17979594 + L1MA8 LINE L1 6133 6289 -2 2257 114 0 7 chr13 83894515 83894823 -17978346 + AluSq SINE Alu 1 306 -7 2028 109 0 84 chr13 83894943 83895265 -17977904 + AluSx SINE Alu 1 295 -17 336 290 65 8 chr13 83895691 83895815 -17977354 - L2 LINE L2 -10 3303 3173 1962 122 4 4 chr13 83898710 83898981 -17974188 + AluSg SINE Alu 1 271 -39 2398 79 0 20 chr13 83899221 83899526 -17973643 + AluSx SINE Alu 1 299 -13 2368 60 10 7 chr13 83899529 83899831 -17973338 + AluY SINE Alu 1 303 -8 433 313 114 48 chr13 83900393 83900876 -17972293 - L1M4 LINE L1 -2700 3446 2932 22 0 0 0 chr13 83900982 83901004 -17972165 + AT_rich Low_complexity Low_complexity 1 22 0 407 286 116 25 chr13 83901367 83901414 -17971755 - L1M4 LINE L1 -3726 2420 2379 1276 93 6 0 chr13 83901414 83901586 -17971583 - L1PB1 LINE L1 -1 6150 5978 407 286 116 25 chr13 83901586 83901737 -17971432 - L1M4 LINE L1 -3767 2379 2204 183 263 66 26 chr13 83902195 83902271 -17970898 - MER5A DNA MER1_type -84 105 27 516 289 98 0 chr13 83902663 83902836 -17970333 + L3 LINE CR1 1189 1378 -199 235 293 12 49 chr13 83904788 83904870 -17968299 - L2 LINE L2 -1 3312 3234 227 237 0 17 chr13 83905510 83905569 -17967600 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 872 39 0 19 chr13 83905690 83905826 -17967343 + L1PA3 LINE L1 6050 6183 0 196 333 0 0 chr13 83905869 83905932 -17967237 + L2 LINE L2 3251 3313 0 435 267 37 15 chr13 83905939 83906074 -17967095 + L2 LINE L2 3159 3296 -17 224 341 47 0 chr13 83906086 83906171 -17966998 - MIR SINE MIR -73 135 47 288 173 0 93 chr13 83906933 83907008 -17966161 - L2 LINE L2 -88 3225 3158 408 317 31 6 chr13 83907019 83907180 -17965989 + L1ME LINE L1 5550 5714 -407 374 0 22 0 chr13 83907255 83907301 -17965868 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 433 315 72 43 chr13 83907586 83907935 -17965234 - MLT1J LTR MaLR -144 367 9 1462 122 87 9 chr13 83907951 83908181 -17964988 - MER1B DNA MER1_type 0 339 132 446 279 87 22 chr13 83908807 83908990 -17964179 - MIR SINE MIR -10 252 58 348 316 141 6 chr13 83910103 83910280 -17962889 - MIR SINE MIR -30 232 32 332 266 140 21 chr13 83910518 83910661 -17962508 - MIR SINE MIR -62 146 29 281 275 213 75 chr13 83912158 83912318 -17960851 + MIR SINE MIR 10 191 -71 1862 146 0 24 chr13 83913091 83913405 -17959764 + AluJb SINE Alu 1 312 0 475 241 30 69 chr13 83913823 83914026 -17959143 + L2 LINE L2 1818 2012 -1302 228 209 0 0 chr13 83915370 83915413 -17957756 - MIR3 SINE MIR -3 205 163 676 135 0 0 chr13 83915891 83915987 -17957182 - AluY SINE Alu -221 97 2 1140 163 38 78 chr13 83915989 83916064 -17957105 - MLT1B LTR MaLR -141 249 173 2300 99 0 3 chr13 83916064 83916358 -17956811 + AluSx SINE Alu 1 293 -19 1140 163 38 78 chr13 83916358 83916586 -17956583 - MLT1B LTR MaLR -217 173 9 241 245 160 19 chr13 83917037 83917143 -17956026 + MIR SINE MIR 72 192 -70 544 266 39 39 chr13 83917216 83917445 -17955724 + MIR SINE MIR 12 240 -22 425 218 13 0 chr13 83917791 83917869 -17955300 + Tigger5 DNA MER2_type 1 79 -2244 451 160 13 0 chr13 83917871 83917946 -17955223 - Tigger5 DNA MER2_type -6 2317 2242 389 244 0 0 chr13 83917936 83918018 -17955151 + Tigger5 DNA MER2_type 2242 2323 0 * 1917 129 40 3 chr13 83918800 83919103 -17954066 - MER2 DNA MER2_type -25 320 7 2262 91 10 16 chr13 83919221 83919530 -17953639 - L1MA1 LINE L1 -7 6295 5989 271 196 0 0 chr13 83919692 83919748 -17953421 + L2 LINE L2 3257 3312 -1 1984 173 46 27 chr13 83919979 83920521 -17952648 - MLT2A1 LTR ERVL 0 554 1 2036 137 3 0 chr13 83920881 83921180 -17951989 + AluJo SINE Alu 1 300 -12 245 158 0 0 chr13 83922930 83922968 -17950201 - MIR SINE MIR -112 150 113 207 0 0 0 chr13 83922993 83923016 -17950153 + (A)n Simple_repeat Simple_repeat 1 23 0 237 33 0 0 chr13 83923354 83923384 -17949785 + (ATG)n Simple_repeat Simple_repeat 3 32 0 652 272 75 9 chr13 83923392 83923605 -17949564 - MIR SINE MIR -20 242 16 189 0 0 0 chr13 83923606 83923627 -17949542 + (T)n Simple_repeat Simple_repeat 1 21 0 21 71 0 0 chr13 83924745 83924787 -17948382 + AT_rich Low_complexity Low_complexity 1 42 0 218 294 0 0 chr13 83924810 83924861 -17948308 + L2 LINE L2 2701 2751 -563 487 113 60 13 chr13 83925036 83925186 -17947983 + (CA)n Simple_repeat Simple_repeat 2 158 0 342 169 0 0 chr13 83925820 83925885 -17947284 + GA-rich Low_complexity Low_complexity 4 68 0 273 29 0 0 chr13 83925994 83926028 -17947141 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr13 83926444 83926472 -17946697 + AT_rich Low_complexity Low_complexity 1 28 0 381 264 10 20 chr13 83926658 83926775 -17946394 - MIR SINE MIR -47 161 45 213 276 40 40 chr13 83927553 83927629 -17945540 - L2 LINE L2 -220 3052 2977 1573 207 110 39 chr13 83928204 83928667 -17944502 + MLT1D LTR MaLR 8 503 -2 678 278 85 92 chr13 83928821 83928874 -17944295 + L2 LINE L2 1894 1946 -1368 1863 183 67 9 chr13 83928874 83929219 -17943950 + MLT1A1 LTR MaLR 1 365 0 678 278 85 92 chr13 83929219 83930034 -17943135 + L2 LINE L2 1946 2819 -495 200 154 39 39 chr13 83930299 83930351 -17942818 + L2 LINE L2 3261 3312 -1 2413 81 3 0 chr13 83931555 83931863 -17941306 - AluSp SINE Alu -4 309 1 216 0 0 0 chr13 83933507 83933531 -17939638 + (CACCC)n Simple_repeat Simple_repeat 3 26 0 382 198 36 20 chr13 83933684 83933933 -17939236 + (TAGA)n Simple_repeat Simple_repeat 1 253 0 363 115 0 0 chr13 83933936 83933988 -17939181 - MADE1 DNA Mariner 0 80 29 604 170 31 0 chr13 83933998 83934157 -17939012 + (TGGA)n Simple_repeat Simple_repeat 4 167 0 308 164 15 0 chr13 83934183 83934250 -17938919 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 305 308 161 14 chr13 83935557 83935700 -17937469 + MER5A DNA MER1_type 24 187 -2 536 207 58 112 chr13 83935709 83935832 -17937337 - MER5B DNA MER1_type 0 178 67 1610 175 70 7 chr13 83935832 83936117 -17937052 - AluJo SINE Alu -8 304 2 536 207 58 112 chr13 83936117 83936181 -17936988 - MER5B DNA MER1_type -111 67 1 297 219 176 17 chr13 83936272 83936391 -17936778 - L2 LINE L2 0 3313 3176 1206 147 5 25 chr13 83937277 83937475 -17935694 - AluSc SINE Alu -8 301 108 14225 115 28 16 chr13 83937844 83939500 -17933669 - Tigger1 DNA MER2_type -25 2393 698 1896 141 14 3 chr13 83939500 83939836 -17933333 + AluSx SINE Alu 1 339 0 14225 115 28 16 chr13 83939836 83940543 -17932626 - Tigger1 DNA MER2_type -1720 698 1 1354 185 43 98 chr13 83943525 83944038 -17929131 + L1M4 LINE L1 2604 3088 -3058 1095 132 0 0 chr13 83944038 83944190 -17928979 + AluSg/x SINE Alu 137 288 -24 329 303 43 31 chr13 83944212 83944374 -17928795 - MER20B DNA MER1_type -613 170 7 238 325 162 0 chr13 83945105 83945259 -17927910 + MIR3 SINE MIR 30 208 0 226 346 10 10 chr13 83945415 83945519 -17927650 - MIR SINE MIR -110 152 49 655 148 30 124 chr13 83945763 83945965 -17927204 + MER96B DNA MER1_type? 1 183 -234 883 154 64 0 chr13 83946243 83946399 -17926770 + Tigger4(Zombi) DNA MER2_type 2566 2731 0 1141 144 36 22 chr13 83948659 83948881 -17924288 - L1MB2 LINE L1 -8 6163 5939 342 0 0 0 chr13 83948881 83948919 -17924250 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 752 186 0 0 chr13 83948923 83949041 -17924128 - AluJb SINE Alu -34 278 161 511 230 38 113 chr13 83949146 83949490 -17923679 - MLT1F LTR MaLR -199 343 26 504 348 137 14 chr13 83949610 83950168 -17923001 + L2 LINE L2 2616 3262 -10 224 339 64 0 chr13 83950176 83950285 -17922884 - L2 LINE L2 -2 3311 3196 947 113 27 7 chr13 83950708 83950858 -17922311 - L1MA4A LINE L1 -351 5952 5800 25 0 0 0 chr13 83952360 83952385 -17920784 + AT_rich Low_complexity Low_complexity 1 25 0 225 328 60 0 chr13 83952826 83952893 -17920276 - L2 LINE L2 -42 3230 3160 318 115 0 0 chr13 83954172 83954224 -17918945 + (TC)n Simple_repeat Simple_repeat 2 53 0 230 0 33 0 chr13 83954225 83954255 -17918914 + (CA)n Simple_repeat Simple_repeat 2 32 0 262 149 11 81 chr13 83954934 83955021 -17918148 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 931 96 169 45 chr13 83955782 83955960 -17917209 - AluSg/x SINE Alu -11 299 100 21 0 0 0 chr13 83957530 83957551 -17915618 + AT_rich Low_complexity Low_complexity 1 21 0 524 292 79 17 chr13 83957667 83957845 -17915324 - MIR SINE MIR -72 190 2 2323 109 3 0 chr13 83957958 83958270 -17914899 + AluSp SINE Alu 1 313 0 203 0 0 36 chr13 83960968 83960996 -17912173 + (GA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr13 83961176 83961196 -17911973 + (TA)n Simple_repeat Simple_repeat 2 21 0 446 133 0 0 chr13 83961637 83961712 -17911457 - AluS SINE Alu -4 305 231 2289 41 0 0 chr13 83961712 83961981 -17911188 - AluY SINE Alu -6 305 37 218 290 0 43 chr13 83963027 83963096 -17910073 - MIR SINE MIR -177 85 20 181 260 146 31 chr13 83964198 83964294 -17908875 - MIR SINE MIR -109 153 47 550 266 109 40 chr13 83964442 83964645 -17908524 - MIR SINE MIR -3 205 40 224 288 169 25 chr13 83964649 83964767 -17908402 - MIR3 SINE MIR -64 144 10 437 302 108 14 chr13 83965565 83965777 -17907392 - MIR SINE MIR 0 262 31 28 29 0 0 chr13 83966752 83966787 -17906382 + AT_rich Low_complexity Low_complexity 1 35 0 216 241 0 35 chr13 83967034 83967092 -17906077 + GA-rich Low_complexity Low_complexity 1 56 0 898 171 15 10 chr13 83967096 83967295 -17905874 + L1MB3 LINE L1 5983 6182 -1 2151 109 0 0 chr13 83967577 83967853 -17905316 + AluSx SINE Alu 1 276 -36 21 36 0 0 chr13 83968490 83968518 -17904651 + AT_rich Low_complexity Low_complexity 1 28 0 498 283 14 7 chr13 83970433 83970571 -17902598 - MIR3 SINE MIR -9 199 61 22 35 0 0 chr13 83971455 83971484 -17901685 + AT_rich Low_complexity Low_complexity 1 29 0 232 257 64 73 chr13 83972752 83972861 -17900308 - MIR SINE MIR -38 224 117 2302 105 0 13 chr13 83973953 83974266 -17898903 - AluSg SINE Alu -1 309 1 1358 151 8 17 chr13 83974281 83974519 -17898650 - MER46A DNA MER2_type 0 236 1 828 288 117 109 chr13 83974815 83975289 -17897880 - L2 LINE L2 -406 2908 2439 685 67 0 0 chr13 83975289 83975379 -17897790 - 5S rRNA rRNA -31 90 1 828 288 117 109 chr13 83975379 83975696 -17897473 - L2 LINE L2 -875 2439 2126 414 0 0 0 chr13 83975696 83975742 -17897427 + (TG)n Simple_repeat Simple_repeat 1 46 0 828 288 117 109 chr13 83975742 83976039 -17897130 - L2 LINE L2 -1188 2126 1720 252 243 247 23 chr13 83976956 83977113 -17896056 + MIR SINE MIR 31 215 -47 1806 137 3 18 chr13 83980405 83980717 -17892452 + AluJb SINE Alu 1 308 0 351 78 0 0 chr13 83980978 83981029 -17892140 + (TG)n Simple_repeat Simple_repeat 2 52 0 285 98 0 0 chr13 83983410 83983451 -17889718 + (TA)n Simple_repeat Simple_repeat 2 42 0 1873 166 6 13 chr13 83984536 83984850 -17888319 + AluJo SINE Alu 1 312 0 22 35 0 0 chr13 83985101 83985130 -17888039 + AT_rich Low_complexity Low_complexity 1 29 0 193 116 23 23 chr13 83987669 83987712 -17885457 + (TA)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr13 83988761 83988798 -17884371 + AT_rich Low_complexity Low_complexity 1 37 0 198 71 0 0 chr13 83991755 83991783 -17881386 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 363 384 132 0 chr13 83992594 83992813 -17880356 + MIR SINE MIR 15 262 0 201 174 184 92 chr13 83993018 83993116 -17880053 - L2 LINE L2 -8 3305 3199 1417 209 53 60 chr13 83993166 83993233 -17879936 - MLT1C LTR MaLR 0 467 401 1711 136 40 0 chr13 83993233 83993483 -17879686 + AluSx SINE Alu 1 260 -52 183 100 0 0 chr13 83993483 83993513 -17879656 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1417 209 53 60 chr13 83993513 83993913 -17879256 - MLT1C LTR MaLR -64 403 2 204 300 0 50 chr13 83994078 83994158 -17879011 + MIR3 SINE MIR 124 199 -9 569 265 99 31 chr13 83994401 83994624 -17878545 - MIR SINE MIR -4 258 21 406 209 35 0 chr13 83994636 83994722 -17878447 + MER5A DNA MER1_type 9 97 -92 205 284 53 95 chr13 83994921 83995016 -17878153 + L2 LINE L2 2638 2728 -586 1488 241 81 59 chr13 83995019 83996020 -17877149 - MER69B DNA AcHobo -1300 1226 79 2165 119 0 0 chr13 83996020 83996315 -17876854 - AluSg SINE Alu -5 305 11 1488 241 81 59 chr13 83996315 83996395 -17876774 - MER69B DNA AcHobo -2447 79 2 276 353 88 53 chr13 83996494 83996856 -17876313 + L2 LINE L2 2821 3202 -70 2163 133 36 31 chr13 83996856 83997216 -17875953 - THE1B LTR MaLR -2 362 1 276 353 88 53 chr13 83997216 83997286 -17875883 + L2 LINE L2 3202 3268 -4 1087 261 90 12 chr13 83997906 83998305 -17874864 + LTR16A LTR ERVL 17 446 -4 353 217 181 22 chr13 83999524 83999662 -17873507 + MER103 DNA DNA 3 162 -4 926 252 113 42 chr13 83999826 84000303 -17872866 + L1MC4 LINE L1 7119 7629 -413 2226 85 0 11 chr13 84000458 84000765 -17872404 + AluY SINE Alu 1 304 0 848 131 36 122 chr13 84002368 84002589 -17870580 - MER3 DNA MER1_type -2 207 6 453 252 89 0 chr13 84002695 84002818 -17870351 + MER45A DNA AcHobo 45 178 0 2403 88 3 0 chr13 84003157 84003465 -17869704 - AluSc SINE Alu 0 309 1 227 240 80 0 chr13 84003540 84003590 -17869579 - L2 LINE L2 -5 3308 3255 21 0 0 0 chr13 84004320 84004341 -17868828 + AT_rich Low_complexity Low_complexity 1 21 0 2246 114 3 0 chr13 84004485 84004792 -17868377 - AluSx SINE Alu -4 308 1 21 0 0 0 chr13 84005017 84005038 -17868131 + AT_rich Low_complexity Low_complexity 1 21 0 1524 146 34 0 chr13 84005277 84005545 -17867624 - L1MC1 LINE L1 0 6333 6057 360 0 0 0 chr13 84006381 84006421 -17866748 + (CA)n Simple_repeat Simple_repeat 2 41 0 474 222 0 0 chr13 84006506 84006587 -17866582 - MER2 DNA MER2_type -256 89 9 254 267 95 29 chr13 84006763 84006868 -17866301 + L1ME4a LINE L1 4530 4641 -1505 211 233 137 0 chr13 84007024 84007097 -17866072 + MIR SINE MIR 32 114 -148 318 264 305 7 chr13 84007506 84007798 -17865371 + L1ME4a LINE L1 5739 6117 -4 251 328 51 9 chr13 84008273 84008404 -17864765 + MIR SINE MIR 19 150 -62 1638 204 80 0 chr13 84008713 84009051 -17864118 - MLT1A1 LTR MaLR 0 365 1 270 56 0 0 chr13 84009230 84009266 -17863903 + (CATA)n Simple_repeat Simple_repeat 4 39 0 485 238 32 8 chr13 84009970 84010096 -17863073 - MER94 DNA DNA -1 133 5 1758 266 67 17 chr13 84010319 84010841 -17862328 + MLT1H1 LTR MaLR 8 555 0 219 69 0 0 chr13 84011263 84011292 -17861877 + (T)n Simple_repeat Simple_repeat 1 29 0 190 274 32 32 chr13 84011584 84011646 -17861523 + L3 LINE CR1 243 304 -1273 362 240 183 0 chr13 84011831 84011935 -17861234 - MIR SINE MIR -67 141 19 21 0 0 0 chr13 84014806 84014827 -17858342 + AT_rich Low_complexity Low_complexity 1 21 0 236 271 75 65 chr13 84014995 84015194 -17857975 - L1MEd LINE L1 -5900 219 19 2070 170 25 15 chr13 84016304 84016698 -17856471 + L1MB3 LINE L1 5732 6129 -54 1142 235 30 30 chr13 84016726 84017024 -17856145 + L1MDa LINE L1 1 298 -6242 290 159 29 58 chr13 84017618 84017687 -17855482 + MIR SINE MIR 88 154 -108 1704 5 5 0 chr13 84017809 84017996 -17855173 - AluY SINE Alu -123 188 1 24 0 0 0 chr13 84019300 84019324 -17853845 + AT_rich Low_complexity Low_complexity 1 24 0 2243 124 0 3 chr13 84019424 84019738 -17853431 - AluSq SINE Alu 0 313 1 354 341 79 94 chr13 84020193 84020609 -17852560 + L2 LINE L2 2861 3270 -2 1866 131 0 0 chr13 84021616 84021868 -17851301 + AluSx SINE Alu 34 285 -27 266 295 57 12 chr13 84022483 84022577 -17850592 - MIR SINE MIR -63 145 64 1602 183 0 14 chr13 84022715 84022999 -17850170 + AluJo SINE Alu 3 282 -30 560 265 27 45 chr13 84023711 84023934 -17849235 - MER112 DNA MER1_type -41 219 1 22 0 0 0 chr13 84024002 84024024 -17849145 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 84028565 84028587 -17844582 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr13 84029320 84029347 -17843822 + (TA)n Simple_repeat Simple_repeat 1 27 0 226 271 117 42 chr13 84029603 84029843 -17843326 + L1ME4a LINE L1 5753 6010 -111 332 272 61 130 chr13 84029950 84030211 -17842958 + L3 LINE CR1 1262 1504 -73 340 297 0 120 chr13 84030592 84030767 -17842402 - MER5A DNA MER1_type 0 189 36 216 309 36 45 chr13 84030669 84030779 -17842390 + MER5A DNA MER1_type 69 177 -12 * 510 316 110 38 chr13 84031619 84032011 -17841158 + L2 LINE L2 2894 3313 0 282 299 55 47 chr13 84032448 84032575 -17840594 - MIR3 SINE MIR -36 172 45 284 293 134 45 chr13 84033139 84033296 -17839873 - MIR SINE MIR -63 199 29 2333 87 0 0 chr13 84033748 84034046 -17839123 + AluY SINE Alu 1 298 -13 328 252 34 25 chr13 84034047 84034166 -17839003 - HAL1b LINE L1 -74 1274 1155 251 301 11 18 chr13 84034184 84034282 -17838887 - MIR SINE MIR -80 128 30 814 164 0 8 chr13 84035306 84035434 -17837735 + AluSq/x SINE Alu 1 127 -186 289 351 76 56 chr13 84036678 84036980 -17836189 - L2 LINE L2 0 3272 2965 201 311 89 11 chr13 84036983 84037073 -17836096 + L2 LINE L2 2597 2693 -621 1660 176 3 33 chr13 84037332 84037634 -17835535 - AluJo SINE Alu -19 293 1 596 267 40 27 chr13 84037995 84038145 -17835024 - MER91A DNA MER1_type -29 167 16 302 339 136 33 chr13 84038135 84038386 -17834783 + MLT1K LTR MaLR 147 435 -153 * 252 0 0 0 chr13 84038386 84038414 -17834755 + (GA)n Simple_repeat Simple_repeat 2 29 0 302 339 136 33 chr13 84038414 84038463 -17834706 + MLT1K LTR MaLR 435 478 -110 1718 143 103 4 chr13 84038506 84038779 -17834390 - AluSx SINE Alu -12 300 1 402 316 60 45 chr13 84038855 84039190 -17833979 - MER102b DNA MER1_type -1 340 1 313 318 84 58 chr13 84039200 84039284 -17833885 + L2 LINE L2 2804 2884 -388 2155 124 0 0 chr13 84039284 84039575 -17833594 - AluSx SINE Alu -21 291 1 313 318 84 58 chr13 84039575 84039764 -17833405 + L2 LINE L2 2884 3084 -188 213 139 0 0 chr13 84039775 84039818 -17833351 + (A)n Simple_repeat Simple_repeat 1 43 0 2393 81 0 37 chr13 84039935 84040256 -17832913 + AluSc SINE Alu 1 309 0 1264 197 79 11 chr13 84040301 84040657 -17832512 + MER96B DNA MER1_type? 37 416 -1 1006 249 93 45 chr13 84040658 84041187 -17831982 - L1MEc LINE L1 -4396 2000 1447 298 234 52 0 chr13 84041251 84041328 -17831841 - L1MEc LINE L1 -6282 114 34 366 327 31 45 chr13 84041328 84041556 -17831613 - L1MDa LINE L1 -3983 2232 2059 636 309 60 36 chr13 84041850 84042735 -17830434 - L1MDa LINE L1 -4701 1695 790 21 0 0 0 chr13 84043216 84043237 -17829932 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 84045194 84045223 -17827946 + AT_rich Low_complexity Low_complexity 1 29 0 31 44 0 0 chr13 84046792 84046837 -17826332 + AT_rich Low_complexity Low_complexity 1 45 0 249 282 149 50 chr13 84046846 84047027 -17826142 + L2 LINE L2 3099 3297 -16 452 312 68 40 chr13 84047137 84047563 -17825606 - MLT1L LTR MaLR -5 610 173 198 0 0 0 chr13 84051695 84051717 -17821452 + (A)n Simple_repeat Simple_repeat 1 22 0 1220 187 59 10 chr13 84053277 84053582 -17819587 - MER33 DNA MER1_type 0 324 5 500 311 45 23 chr13 84053596 84053773 -17819396 + MIR SINE MIR 82 262 0 189 139 28 0 chr13 84054289 84054325 -17818844 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 329 63 52 chr13 84054432 84054947 -17818222 - L2 LINE L2 -16 3256 2739 388 261 58 123 chr13 84055233 84055663 -17817506 + MLT1J LTR MaLR 110 511 0 2902 124 151 19 chr13 84055815 84056357 -17816812 - LTR18B LTR ERVL 0 614 1 240 302 16 0 chr13 84057191 84057254 -17815915 + L2 LINE L2 3204 3267 -46 1674 170 4 11 chr13 84057411 84057688 -17815481 + AluSx SINE Alu 1 275 -37 215 205 0 0 chr13 84057692 84057731 -17815438 + GA-rich Low_complexity Low_complexity 1 39 0 572 288 132 14 chr13 84057825 84058037 -17815132 - MIR SINE MIR 0 262 26 472 291 146 38 chr13 84058513 84058964 -17814205 - LTR33 LTR ERVL -3 518 19 732 239 47 19 chr13 84059456 84059669 -17813500 + MER58A DNA MER1_type 6 224 0 394 343 42 0 chr13 84059720 84059863 -17813306 + L2 LINE L2 3112 3260 -12 1351 248 62 37 chr13 84060234 84060614 -17812555 - LTR51 LTR ERV1 -14 657 305 2775 19 0 0 chr13 84060614 84060921 -17812248 + AluYa5 SINE Alu 1 307 -4 1351 248 62 37 chr13 84060921 84061234 -17811935 - LTR51 LTR ERV1 -366 305 1 638 208 23 128 chr13 84061399 84061664 -17811505 - L2 LINE L2 0 3313 3077 262 333 25 17 chr13 84064602 84064722 -17808447 - L2 LINE L2 -666 2648 2528 273 191 0 15 chr13 84064835 84064903 -17808266 - MER116 DNA Mariner 0 80 14 24 53 0 0 chr13 84066569 84066607 -17806562 + AT_rich Low_complexity Low_complexity 1 38 0 2202 193 25 0 chr13 84066931 84067362 -17805807 - MER44D DNA MER2_type 0 605 109 3332 118 6 0 chr13 84067375 84067856 -17805313 + MER1A DNA MER1_type 46 529 0 336 138 0 0 chr13 84067856 84067914 -17805255 - MER44D DNA MER2_type -587 118 61 452 235 0 0 chr13 84067919 84068021 -17805148 - L1 LINE L1 -1121 5025 4924 268 172 17 17 chr13 84068024 84068082 -17805087 - MER44D DNA MER2_type -647 58 1 265 292 11 11 chr13 84068591 84068680 -17804489 - MIR SINE MIR 0 262 174 9784 197 24 35 chr13 84068788 84068968 -17804201 - L1P4 LINE L1 -393 6473 6293 2076 104 0 0 chr13 84068968 84069236 -17803933 - AluSq SINE Alu -11 302 35 9784 197 24 35 chr13 84069236 84069389 -17803780 - L1P4 LINE L1 -573 6293 6140 2009 147 0 11 chr13 84069389 84069700 -17803469 - AluSx SINE Alu 0 308 1 9784 197 24 35 chr13 84069700 84072317 -17800852 - L1P4 LINE L1 -726 6140 3552 7503 170 21 12 chr13 84072324 84073920 -17799249 - L1P4 LINE L1 -4792 2057 709 2277 166 25 7 chr13 84073925 84074329 -17798840 - MSTB LTR MaLR -15 411 1 5290 161 3 3 chr13 84074329 84075205 -17797964 - L1P4 LINE L1 -5950 899 24 461 296 119 41 chr13 84076256 84076550 -17796619 + L2 LINE L2 2903 3219 -53 2232 102 0 3 chr13 84078399 84078702 -17794467 - AluY SINE Alu -9 302 1 288 0 0 0 chr13 84078708 84078768 -17794401 + (CA)n Simple_repeat Simple_repeat 1 92 0 288 0 0 0 chr13 84078768 84078800 -17794369 + (CA)n Simple_repeat Simple_repeat 2 33 0 2673 113 59 7 chr13 84078813 84079220 -17793949 - MSTA LTR MaLR 0 428 1 612 197 20 20 chr13 84079612 84079759 -17793410 + MLT1C LTR MaLR 6 152 -315 771 152 40 13 chr13 84079762 84079913 -17793256 + MSTC LTR MaLR 274 428 0 415 245 175 7 chr13 84080164 84080307 -17792862 + MER3 DNA MER1_type 3 122 -87 282 311 38 0 chr13 84080784 84080890 -17792279 + GA-rich Low_complexity Low_complexity 3 112 0 393 299 81 68 chr13 84082021 84082329 -17790840 + L1MEd LINE L1 135 446 -5759 1880 156 53 36 chr13 84082399 84082757 -17790412 - THE1B LTR MaLR 0 364 1 512 323 26 16 chr13 84082757 84082949 -17790220 + L1MEd LINE L1 525 718 -5487 405 244 39 6 chr13 84082963 84083119 -17790050 + L1MEd LINE L1 1053 1213 -4992 276 291 101 55 chr13 84083281 84083372 -17789797 + L1MEd LINE L1 1265 1350 -5046 2280 120 0 0 chr13 84083372 84083673 -17789496 + AluSx SINE Alu 1 301 -11 276 291 101 55 chr13 84083673 84084104 -17789065 + L1MEd LINE L1 1350 1811 -4585 353 284 50 55 chr13 84084290 84084491 -17788678 + L1MEd LINE L1 2108 2307 -4089 7304 36 8 0 chr13 84084531 84085569 -17787600 + L1PA4 LINE L1 5111 6155 0 285 227 0 34 chr13 84085581 84085669 -17787500 + L1MEd LINE L1 2345 2429 -3786 1310 192 7 40 chr13 84086043 84086319 -17786850 - AluJo SINE Alu -45 267 1 460 260 64 0 chr13 84087266 84087412 -17785757 + MIR SINE MIR 63 221 -41 2070 152 7 0 chr13 84088026 84088329 -17784840 - AluSx SINE Alu -7 305 1 21 0 0 0 chr13 84088350 84088371 -17784798 + AT_rich Low_complexity Low_complexity 1 21 0 2466 75 0 0 chr13 84088371 84088663 -17784506 + AluY SINE Alu 1 292 -19 499 294 130 45 chr13 84088869 84089619 -17783550 - L1MEd LINE L1 -3220 2909 552 862 156 89 0 chr13 84089641 84089814 -17783355 - FRAM SINE Alu 0 183 1 324 0 0 0 chr13 84090785 84090821 -17782348 + (TG)n Simple_repeat Simple_repeat 1 36 0 2455 32 14 0 chr13 84090837 84091118 -17782051 - AluY SINE Alu -26 285 1 2263 151 27 14 chr13 84093141 84093511 -17779658 - THE1C LTR MaLR 0 375 1 182 194 0 0 chr13 84093865 84093901 -17779268 + MIR SINE MIR 20 55 -207 1003 101 71 30 chr13 84093901 84094070 -17779099 + AluSp SINE Alu 130 305 -8 533 292 26 20 chr13 84094076 84094271 -17778898 + MIR SINE MIR 67 262 0 199 330 148 55 chr13 84094326 84094562 -17778607 + L2 LINE L2 2404 2661 -653 312 91 0 0 chr13 84094602 84094646 -17778523 + (A)n Simple_repeat Simple_repeat 1 44 0 600 265 46 15 chr13 84094687 84094883 -17778286 - MIR SINE MIR -59 203 2 3456 73 40 0 chr13 84096250 84096677 -17776492 - MLT2A1 LTR ERVL 0 444 1 660 258 27 60 chr13 84096947 84097246 -17775923 + L1ME4a LINE L1 5539 5827 -294 2559 157 8 5 chr13 84097328 84097730 -17775439 + MER57A LTR ERV1 1 403 0 377 328 22 39 chr13 84097965 84098145 -17775024 - L2 LINE L2 -230 3042 2866 241 270 32 71 chr13 84098310 84098436 -17774733 - L2 LINE L2 -925 2389 2269 325 330 98 53 chr13 84098499 84099253 -17773916 - L2 LINE L2 -1229 2085 1298 497 335 50 6 chr13 84100525 84100707 -17772462 + MIR SINE MIR 24 213 -49 809 280 68 0 chr13 84101302 84101509 -17771660 - MIR SINE MIR -21 241 21 185 311 0 16 chr13 84102160 84102221 -17770948 - L2 LINE L2 -8 3264 3205 185 273 0 61 chr13 84102335 84102401 -17770768 + L2 LINE L2 3252 3313 0 230 269 21 113 chr13 84102435 84102576 -17770593 - L2 LINE L2 -295 2977 2850 435 214 0 8 chr13 84102674 84102777 -17770392 - MER5A DNA MER1_type -83 106 4 212 280 0 0 chr13 84102935 84102985 -17770184 - L2 LINE L2 -12 3260 3211 396 183 0 0 chr13 84104400 84104471 -17768698 + LTR67 LTR ERVL 487 557 0 187 147 0 29 chr13 84104471 84104505 -17768664 + MIR SINE MIR 154 186 -76 195 100 0 0 chr13 84104857 84104887 -17768282 + (TG)n Simple_repeat Simple_repeat 2 31 0 405 149 14 0 chr13 84105022 84105096 -17768073 - L1MC2 LINE L1 0 6344 6270 1184 177 0 10 chr13 84105114 84105312 -17767857 - AluJo SINE Alu -18 294 99 4723 172 121 95 chr13 84105312 84106965 -17766204 + pTR5 LTR ERV1 743 2438 0 710 136 0 0 chr13 84106966 84107069 -17766100 - AluJ SINE Alu -208 104 2 258 254 177 2 chr13 84107775 84107867 -17765302 - MIR SINE MIR -51 157 52 772 201 95 0 chr13 84107894 84108063 -17765106 - MLT1A2 LTR MaLR 0 374 190 357 284 53 63 chr13 84108713 84108903 -17764266 - MIR SINE MIR -55 207 20 1543 232 80 1 chr13 84109012 84109528 -17763641 + MLT2F LTR ERVL 1 603 -60 726 183 85 20 chr13 84109588 84109741 -17763428 + MLT1B LTR MaLR 8 170 -220 2597 103 103 20 chr13 84109746 84110205 -17762964 + Tigger2 DNA MER2_type 1 2718 0 1048 179 6 0 chr13 84110224 84110397 -17762772 + MLT1B LTR MaLR 213 386 -4 415 191 0 18 chr13 84110399 84110509 -17762660 + GA-rich Low_complexity Low_complexity 3 110 0 1967 149 40 110 chr13 84110525 84110969 -17762200 - MLT2D LTR ERVL 0 414 2 308 51 0 0 chr13 84110981 84111020 -17762149 + MLT2F LTR ERVL 622 660 -3 875 180 5 118 chr13 84111226 84111338 -17761831 - MER5A DNA MER1_type -1 188 110 1840 146 111 23 chr13 84111338 84111681 -17761488 + THE1C LTR MaLR 1 373 -2 875 180 5 118 chr13 84111681 84111779 -17761390 - MER5A DNA MER1_type -79 110 2 1142 246 161 5 chr13 84111934 84112320 -17760849 + L1ME3 LINE L1 5635 6080 -82 2362 103 0 0 chr13 84112356 84112658 -17760511 - AluSx SINE Alu -10 302 1 904 198 148 16 chr13 84112678 84112921 -17760248 - ORSL DNA AcHobo 0 275 1 2405 115 6 6 chr13 84113350 84113697 -17759472 - L1PA13 LINE L1 -3 6160 5814 219 333 18 27 chr13 84113818 84113929 -17759240 - L2 LINE L2 -21 3251 3142 224 302 52 60 chr13 84115212 84115328 -17757841 - L2 LINE L2 0 3272 3158 61 73 0 0 chr13 84115384 84115508 -17757661 + AT_rich Low_complexity Low_complexity 1 124 0 275 325 145 45 chr13 84115725 84116193 -17756976 - L2 LINE L2 -431 2883 2369 472 256 184 0 chr13 84116571 84116739 -17756430 + MIR SINE MIR 54 252 -10 481 285 39 42 chr13 84117293 84117577 -17755592 - L1MEc LINE L1 -4716 1680 1398 2373 291 66 75 chr13 84117683 84118879 -17754290 - HERV16 LTR ERVL -3566 1430 246 3928 74 0 2 chr13 84118879 84119364 -17753805 - L1PB1 LINE L1 -2 6149 5666 2373 291 66 75 chr13 84119364 84119492 -17753677 - HERV16 LTR ERVL -4750 246 118 1643 139 98 35 chr13 84119737 84120054 -17753115 - MER44D DNA MER2_type 0 609 3 504 50 0 75 chr13 84121725 84121841 -17751328 - L1PA2 LINE L1 0 6155 6075 3573 69 7 7 chr13 84122051 84122498 -17750671 + MLT2A2 LTR ERVL 1 447 -6 349 331 0 32 chr13 84122500 84122624 -17750545 + MIR SINE MIR 25 144 -118 1511 238 81 25 chr13 84123063 84123496 -17749673 - MLT1C LTR MaLR 0 467 11 498 313 56 23 chr13 84123797 84124011 -17749158 - MIR SINE MIR -34 228 8 538 225 28 45 chr13 84124207 84124385 -17748784 - L1M4 LINE L1 -3191 2955 2781 261 127 18 18 chr13 84124511 84124566 -17748603 - L1MEc LINE L1 -5697 699 645 921 157 25 86 chr13 84124644 84124842 -17748327 + MLT1A2 LTR MaLR 189 374 0 2091 59 0 0 chr13 84124876 84125130 -17748039 + MLT2A1 LTR ERVL 1 254 -190 12961 122 35 28 chr13 84125132 84128141 -17745028 - L1P3 LINE L1 -3365 3096 6 25459 79 12 3 chr13 84128147 84131417 -17741752 + HERVL-A1 LTR ERVL 465 3764 -1890 12807 81 9 1 chr13 84131517 84133148 -17740021 + HERVL-A1 LTR ERVL 4011 5654 0 3081 102 37 11 chr13 84133148 84133581 -17739588 + MLT2A1 LTR ERVL 1 444 0 770 285 60 8 chr13 84133661 84133910 -17739259 - MIR SINE MIR 0 262 1 227 326 32 70 chr13 84133962 84134149 -17739020 - L2 LINE L2 -214 3058 2879 247 288 92 20 chr13 84134198 84134351 -17738818 - MLT1H LTR MaLR 0 549 386 2201 113 24 39 chr13 84135971 84136352 -17736817 + THE1C LTR MaLR 1 375 0 186 250 146 0 chr13 84137385 84137433 -17735736 - L2 LINE L2 -8 3264 3210 12896 62 7 2 chr13 84137677 84140012 -17733157 + L1PA5 LINE L1 3802 6151 -3 4050 83 6 2 chr13 84139482 84140015 -17733154 + L1PA4 LINE L1 5621 6155 0 2216 117 7 0 chr13 84140360 84140659 -17732510 - AluSx SINE Alu -11 301 1 378 119 0 0 chr13 84140731 84140790 -17732379 + L1PA6 LINE L1 6093 6151 -3 45212 35 1 2 chr13 84141271 84147419 -17725750 + L1HS LINE L1 9 6154 -1 2155 203 8 0 chr13 84147625 84148015 -17725154 - MER63D DNA MER1_type 0 1060 668 280 224 0 0 chr13 84148032 84148090 -17725079 - MER63D DNA MER1_type -622 439 382 425 250 35 9 chr13 84148370 84148481 -17724688 + MER112 DNA MER1_type 8 121 -139 1908 175 53 33 chr13 84148481 84149022 -17724147 - MLT2A2 LTR ERVL -2 552 1 410 282 24 0 chr13 84149023 84149147 -17724022 + MER112 DNA MER1_type 133 259 -1 1283 220 149 46 chr13 84149661 84150116 -17723053 + LTR40a LTR ERVL 2 503 -16 462 172 23 23 chr13 84150123 84150210 -17722959 - HERVL LTR ERVL -1164 4490 4404 217 295 42 32 chr13 84150323 84150418 -17722751 + MIR SINE MIR 131 226 -36 275 260 234 26 chr13 84151059 84151213 -17721956 - MIR SINE MIR -11 251 66 632 300 52 32 chr13 84151578 84151921 -17721248 + LTR16B LTR ERVL 115 464 0 373 178 69 155 chr13 84152765 84152883 -17720286 - MER69 DNA AcHobo -520 2006 1906 2022 143 3 0 chr13 84152883 84153177 -17719992 - AluSg1 SINE Alu -14 295 1 373 178 69 155 chr13 84153177 84153232 -17719937 - MER69 DNA AcHobo -620 1906 1848 1052 254 15 77 chr13 84153538 84153876 -17719293 - MER69 DNA AcHobo -2209 317 1 182 143 0 0 chr13 84153876 84153911 -17719258 + L2 LINE L2 3279 3313 0 2876 3 0 6 chr13 84154394 84154707 -17718462 - AluYa5 SINE Alu 0 311 1 3106 158 49 0 chr13 84154938 84155471 -17717698 - MER89 LTR ERV1 0 559 1 21 0 0 0 chr13 84155717 84155738 -17717431 + AT_rich Low_complexity Low_complexity 1 21 0 292 254 55 27 chr13 84156320 84156430 -17716739 + L1 LINE L1 4903 5015 -1131 269 302 155 0 chr13 84156463 84156579 -17716590 - MIR SINE MIR -69 193 60 219 214 0 0 chr13 84156703 84156745 -17716424 + (CCTA)n Simple_repeat Simple_repeat 4 45 0 812 283 44 0 chr13 84157242 84157447 -17715722 - MLT1J LTR MaLR -58 453 240 285 384 53 11 chr13 84157834 84158073 -17715096 - L2 LINE L2 -335 2978 2733 5387 117 12 7 chr13 84158106 84159382 -17713787 + L1PA12 LINE L1 4724 6001 -167 225 210 0 0 chr13 84159562 84159624 -17713545 + (TG)n Simple_repeat Simple_repeat 1 62 0 2290 149 60 22 chr13 84159695 84160111 -17713058 - MSTB1 LTR MaLR 0 432 1 930 167 94 6 chr13 84160173 84160353 -17712816 - MLT1B LTR MaLR -4 386 191 222 192 0 0 chr13 84160362 84160414 -17712755 + GA-rich Low_complexity Low_complexity 1 52 0 603 206 78 7 chr13 84160417 84160558 -17712611 - MLT1B LTR MaLR -217 173 23 1230 165 136 0 chr13 84161079 84161374 -17711795 + MLT2D LTR ERVL 1 352 -45 183 156 0 0 chr13 84161419 84161451 -17711718 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 439 259 95 15 chr13 84161745 84162019 -17711150 - MLT2A1 LTR ERVL -67 377 82 233 210 59 67 chr13 84162352 84162471 -17710698 - MIR SINE MIR -50 212 95 352 332 174 26 chr13 84162834 84163144 -17710025 - L3b LINE CR1 -120 1463 1108 2262 116 3 0 chr13 84163687 84164005 -17709164 + L1PA13 LINE L1 5815 6133 -30 644 256 6 22 chr13 84164036 84164216 -17708953 - LTR37A LTR ERV1 -61 365 189 330 221 61 33 chr13 84165448 84165532 -17707637 + L1M1 LINE L1 11 91 -7395 1467 119 0 41 chr13 84165532 84165775 -17707394 + L1MA2 LINE L1 6072 6304 0 330 221 61 33 chr13 84165775 84165809 -17707360 + L1M1 LINE L1 91 1645 -5841 1291 268 22 31 chr13 84167449 84167938 -17705231 + L1ME2 LINE L1 3998 4482 -1664 2499 238 68 10 chr13 84167948 84168642 -17704527 + L1ME2 LINE L1 5342 6075 -89 2310 108 0 0 chr13 84168662 84168959 -17704210 + AluSg SINE Alu 1 297 -13 222 228 20 30 chr13 84169956 84170057 -17703112 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr13 84170213 84170241 -17702928 + AT_rich Low_complexity Low_complexity 1 28 0 1044 78 0 21 chr13 84170285 84170427 -17702742 - AluSp/q SINE Alu -8 305 167 690 299 48 34 chr13 84170434 84170875 -17702294 - L1MC/D LINE L1 -748 5398 5214 198 0 0 0 chr13 84170888 84170910 -17702259 + (A)n Simple_repeat Simple_repeat 1 22 0 372 229 69 92 chr13 84170967 84171185 -17701984 - L1MC/D LINE L1 -1457 4689 4477 7885 35 6 4 chr13 84171291 84172192 -17700977 + L1PA3 LINE L1 5254 6155 0 2743 145 9 20 chr13 84172500 84172948 -17700221 - MER65A LTR ERV1 0 445 3 306 294 105 35 chr13 84173000 84173143 -17700026 + MIR3 SINE MIR 10 162 -46 6176 78 0 12 chr13 84173982 84174836 -17698333 + HERVH LTR ERV1 2149 2992 -4721 5886 83 29 5 chr13 84174822 84175656 -17697513 + HERVH LTR ERV1 3140 3993 -3720 * 4567 134 0 1 chr13 84175658 84176321 -17696848 + HERVH LTR ERV1 4488 5149 -2564 1357 129 23 9 chr13 84176322 84176539 -17696630 + HERVH LTR ERV1 5600 5819 -1894 * 2352 111 48 13 chr13 84176537 84176916 -17696253 + HERVH LTR ERV1 7322 7713 0 2792 82 122 5 chr13 84176916 84177319 -17695850 + LTR7 LTR ERV1 1 450 0 453 151 209 0 chr13 84177324 84177410 -17695759 - L1MCa LINE L1 -6304 122 19 226 335 257 0 chr13 84178948 84179100 -17694069 - MIR SINE MIR -5 257 67 287 207 122 85 chr13 84179232 84179314 -17693855 - MER2 DNA MER2_type -251 94 10 228 368 9 9 chr13 84179536 84179642 -17693527 + MIR SINE MIR 36 141 -67 3344 108 29 10 chr13 84180048 84180540 -17692629 - LTR9B LTR ERV1 -143 501 1 2922 126 11 21 chr13 84180910 84181346 -17691823 - MSTB1 LTR MaLR 0 432 1 2996 73 95 2 chr13 84181558 84181968 -17691201 - LTR7 LTR ERV1 -2 448 1 489 280 22 66 chr13 84182041 84182223 -17690946 - MER5B DNA MER1_type -1 177 4 599 208 161 7 chr13 84182224 84182373 -17690796 + MER5A DNA MER1_type 12 183 -6 360 325 7 13 chr13 84183442 84183593 -17689576 + MIR SINE MIR 107 256 -6 214 317 103 0 chr13 84184021 84184166 -17689003 - L3 LINE CR1 -730 847 688 251 362 14 22 chr13 84184822 84184960 -17688209 - MLT1K LTR MaLR -240 348 212 530 339 81 58 chr13 84185906 84186144 -17687025 - L1MEd LINE L1 -4935 1184 953 382 83 17 0 chr13 84186144 84186204 -17686965 - L1MB4 LINE L1 -7 6173 6113 530 339 81 58 chr13 84186204 84186549 -17686620 - L1MEd LINE L1 -5166 953 588 6036 115 11 9 chr13 84186770 84187961 -17685208 - L1PA10 LINE L1 -1 6167 4963 207 309 103 0 chr13 84188144 84188212 -17684957 + L2 LINE L2 3231 3305 -8 2975 109 57 0 chr13 84189038 84189443 -17683726 - MSTA LTR MaLR 0 428 1 329 286 76 0 chr13 84189673 84189844 -17683325 - L1ME4a LINE L1 -195 5926 5743 367 353 39 72 chr13 84190690 84191024 -17682145 - L2 LINE L2 -7 3265 2943 * 544 309 34 6 chr13 84191020 84191195 -17681974 - MIR SINE MIR 0 262 83 514 295 36 48 chr13 84192511 84192928 -17680241 + L1ME4a LINE L1 5708 6119 -2 437 301 133 35 chr13 84192939 84193225 -17679944 + MARNA DNA Mariner 76 389 -197 917 199 64 147 chr13 84193235 84193643 -17679526 - MLT1A2 LTR MaLR 0 374 1 8515 190 15 8 chr13 84193847 84196026 -17677143 + L1P5 LINE L1 3470 5659 -492 545 313 16 11 chr13 84196972 84197154 -17676015 + MIR SINE MIR 74 256 -6 195 276 35 58 chr13 84197247 84197334 -17675835 - L3 LINE CR1 -261 1316 1232 240 324 103 0 chr13 84197582 84197727 -17675442 - L3 LINE CR1 -730 847 688 410 259 35 9 chr13 84197856 84197967 -17675202 + MER112 DNA MER1_type 8 121 -139 2433 103 6 3 chr13 84197967 84198297 -17674872 - MLT2A2 LTR ERVL -2 451 121 17750 38 2 1 chr13 84198601 84201396 -17671773 - L1PA3 LINE L1 -98 6057 3259 198 0 0 0 chr13 84202025 84202047 -17671122 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 11726 27 2 0 chr13 84202047 84204105 -17669064 - L1PA3 LINE L1 -13 6142 4080 468 270 166 16 chr13 84204224 84204543 -17668626 - L2 LINE L2 -1227 2087 1721 2654 78 0 6 chr13 84204955 84205287 -17667882 - MLT2A1 LTR ERVL -1 443 114 1830 108 0 4 chr13 84205396 84205646 -17667523 - THE1C LTR MaLR -126 249 1 739 160 61 0 chr13 84205646 84205777 -17667392 + MSTA LTR MaLR 290 428 0 295 305 136 50 chr13 84205904 84206275 -17666894 - L2 LINE L2 -143 3170 2774 27 0 0 0 chr13 84208207 84208234 -17664935 + AT_rich Low_complexity Low_complexity 1 27 0 608 211 95 32 chr13 84208276 84208466 -17664703 + MIR SINE MIR 47 248 -14 281 204 45 101 chr13 84209122 84209211 -17663958 + MIR SINE MIR 101 183 -62 212 301 54 32 chr13 84209738 84209831 -17663338 - L2 LINE L2 -225 3047 2953 289 268 155 28 chr13 84209831 84209973 -17663196 + MIR SINE MIR 32 191 -71 424 344 70 12 chr13 84210458 84210699 -17662470 - L2 LINE L2 -461 2853 2599 1969 149 13 0 chr13 84211115 84211423 -17661746 - AluSx SINE Alu 0 312 1 402 265 225 10 chr13 84211889 84212089 -17661080 - MIR SINE MIR 0 262 20 1250 167 19 14 chr13 84212101 84212316 -17660853 - MER20 DNA MER1_type -2 217 2 742 251 56 30 chr13 84212449 84212867 -17660302 - MLT1J LTR MaLR -28 483 5 2318 144 71 35 chr13 84212987 84213438 -17659731 + MLT1C LTR MaLR 1 467 0 741 207 136 0 chr13 84213784 84213950 -17659219 + MER63 DNA MER1_type 27 167 -894 2613 145 50 82 chr13 84213950 84214045 -17659124 - MLT2B1 LTR ERVL 0 520 424 614 31 41 10 chr13 84214045 84214142 -17659027 + (TAGA)n Simple_repeat Simple_repeat 1 100 0 2613 145 50 82 chr13 84214142 84214583 -17658586 - MLT2B1 LTR ERVL -96 424 1 741 207 136 0 chr13 84214583 84214742 -17658427 + MER63 DNA MER1_type 167 439 -622 2177 197 8 0 chr13 84214760 84215150 -17658019 + MER63 DNA MER1_type 669 1061 0 21 57 0 0 chr13 84215322 84215357 -17657812 + AT_rich Low_complexity Low_complexity 1 35 0 43789 31 21 2 chr13 84215358 84221390 -17651779 - L1HS LINE L1 -2 6153 1 307 278 222 0 chr13 84221438 84221528 -17651641 + L2 LINE L2 3149 3258 -14 1069 202 44 15 chr13 84224491 84224756 -17648413 - MLT1A1 LTR MaLR -88 277 2 2317 92 7 0 chr13 84224928 84225220 -17647949 - AluSq SINE Alu -19 294 1 207 0 0 0 chr13 84225470 84225493 -17647676 + (A)n Simple_repeat Simple_repeat 1 23 0 186 255 21 21 chr13 84225645 84225692 -17647477 - MIR SINE MIR -146 62 16 263 210 16 16 chr13 84226039 84226101 -17647068 + L1MD2 LINE L1 6212 6273 -86 319 276 124 9 chr13 84226315 84226420 -17646749 + MIR SINE MIR 24 140 -68 2766 145 29 0 chr13 84226795 84227209 -17645960 + MSTB LTR MaLR 1 426 0 237 196 43 0 chr13 84227435 84227481 -17645688 + L1MC/D LINE L1 5595 5642 -702 894 229 16 0 chr13 84227634 84227817 -17645352 + MER5A DNA MER1_type 3 188 -1 424 202 0 32 chr13 84227868 84227962 -17645207 - MLT2E LTR ERVL -506 122 32 5947 137 11 10 chr13 84228236 84228285 -17644884 - L1MC1 LINE L1 0 6333 6286 2062 122 0 34 chr13 84228285 84228606 -17644563 - AluSx SINE Alu -2 310 1 5947 137 11 10 chr13 84228606 84229456 -17643713 - L1MC1 LINE L1 -47 6286 5433 33 25 0 0 chr13 84229549 84229589 -17643580 + AT_rich Low_complexity Low_complexity 1 40 0 521 181 52 17 chr13 84230326 84230442 -17642727 + L1M1 LINE L1 16 135 -7430 585 172 35 24 chr13 84230720 84230889 -17642280 - Charlie5 DNA MER1_type -44 2568 2398 244 317 117 8 chr13 84230912 84231032 -17642137 - L2 LINE L2 -14 3299 3167 633 251 116 45 chr13 84231119 84231189 -17641980 + LTR33 LTR ERVL 1 65 -456 2165 221 121 12 chr13 84231189 84231678 -17641491 + MLT1F LTR MaLR 1 542 0 633 251 116 45 chr13 84231678 84232078 -17641091 + LTR33 LTR ERVL 65 521 0 202 235 103 29 chr13 84232230 84232298 -17640871 + MER91C DNA MER1_type 31 103 -37 981 144 0 0 chr13 84232484 84232616 -17640553 - FLAM_C SINE Alu -1 132 1 2147 116 20 0 chr13 84232624 84232918 -17640251 - AluSx SINE Alu -8 304 5 422 241 136 43 chr13 84234185 84234347 -17638822 - MLT1I LTR MaLR -2 407 231 451 282 56 84 chr13 84235167 84235605 -17637564 + L1M4 LINE L1 4873 5299 -847 1599 158 82 24 chr13 84235605 84235896 -17637273 + AluSx SINE Alu 1 308 -4 451 282 56 84 chr13 84235896 84235940 -17637229 + L1M4 LINE L1 5299 5343 -803 1326 296 80 11 chr13 84235992 84236455 -17636714 + L1MEc LINE L1 142 636 -5760 940 160 138 5 chr13 84236464 84236652 -17636517 + MER20 DNA MER1_type 7 219 0 2689 269 49 46 chr13 84236653 84236998 -17636171 + L1MEc LINE L1 633 976 -5420 1691 182 19 10 chr13 84236998 84237305 -17635864 + AluJo SINE Alu 3 312 0 2689 269 49 46 chr13 84237305 84237323 -17635846 + L1MEc LINE L1 976 992 -5404 1744 132 12 0 chr13 84237323 84237573 -17635596 + AluSx SINE Alu 49 301 -11 2689 269 49 46 chr13 84237573 84238373 -17634796 + L1MEc LINE L1 992 1800 -4596 468 301 9 0 chr13 84238828 84238941 -17634228 - L2 LINE L2 0 3313 3200 5769 93 38 8 chr13 84239323 84240331 -17632838 + L1PA10 LINE L1 5042 6082 -86 198 256 233 11 chr13 84240418 84240508 -17632661 - MIR SINE MIR -68 140 31 506 135 11 34 chr13 84240526 84240615 -17632554 + L1PA11 LINE L1 6087 6173 -1 287 282 194 0 chr13 84240990 84241114 -17632055 + MIR SINE MIR 65 212 -50 517 208 185 46 chr13 84241173 84241346 -17631823 - MIR SINE MIR 0 262 66 205 244 233 11 chr13 84242048 84242138 -17631031 - MIR SINE MIR -68 140 31 2266 102 87 3 chr13 84242291 84242626 -17630543 - THE1B LTR MaLR 0 364 2 1683 173 3 3 chr13 84243091 84243386 -17629783 - AluJb SINE Alu -17 295 1 193 280 50 104 chr13 84244387 84244569 -17628600 - MIR3 SINE MIR -18 190 19 201 158 0 0 chr13 84245244 84245282 -17627887 + A-rich Low_complexity Low_complexity 1 38 0 2149 94 3 79 chr13 84245284 84245612 -17627557 + AluSp SINE Alu 1 303 -10 308 263 48 93 chr13 84245776 84246046 -17627123 + L1ME LINE L1 5562 5819 -302 23 0 0 0 chr13 84246095 84246118 -17627051 + AT_rich Low_complexity Low_complexity 1 23 0 1578 184 18 7 chr13 84246131 84246408 -17626761 + AluJb SINE Alu 6 285 -27 6706 169 35 58 chr13 84246471 84247521 -17625648 + L1MC3 LINE L1 6181 7181 -604 1736 162 41 10 chr13 84247521 84247811 -17625358 + AluJb SINE Alu 10 308 -4 6706 169 35 58 chr13 84247811 84248395 -17624774 + L1MC3 LINE L1 7181 7777 -8 250 143 0 0 chr13 84249011 84249046 -17624123 - L2 LINE L2 -16 3256 3222 1000 50 0 8 chr13 84249522 84249642 -17623527 + AluSq SINE Alu 97 215 -98 1755 173 30 43 chr13 84250108 84250478 -17622691 - MLT1A1 LTR MaLR 0 365 1 2033 143 0 3 chr13 84251210 84251533 -17621636 + AluSq SINE Alu 1 322 0 2363 219 46 4 chr13 84252276 84252820 -17620349 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chr13 84252977 84253002 -17620167 + AT_rich Low_complexity Low_complexity 1 25 0 4923 168 23 8 chr13 84253375 84254280 -17618889 + MER49 LTR ERV1 5 923 0 274 167 0 0 chr13 84255884 84255926 -17617243 + 5S rRNA rRNA 1 42 -79 2370 57 0 0 chr13 84255940 84256221 -17616948 + AluY SINE Alu 1 281 -30 268 24 49 0 chr13 84256224 84256265 -17616904 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 582 290 60 32 chr13 84256308 84256656 -17616513 + HAL1b LINE L1 225 582 -766 26 30 0 0 chr13 84256755 84256788 -17616381 + AT_rich Low_complexity Low_complexity 1 33 0 327 271 31 21 chr13 84256795 84256891 -17616278 + HAL1b LINE L1 758 854 -494 548 250 31 0 chr13 84256946 84257106 -17616063 + L1M4 LINE L1 2821 2985 -3161 1935 174 3 7 chr13 84257189 84257499 -17615670 + AluJb SINE Alu 3 311 -1 33 0 0 0 chr13 84257752 84257785 -17615384 + AT_rich Low_complexity Low_complexity 1 33 0 392 265 30 79 chr13 84258898 84259312 -17613857 + MLT1I LTR MaLR 47 593 -2 441 283 77 72 chr13 84259408 84260147 -17613022 + L1M4 LINE L1 3359 4101 -2045 309 301 17 35 chr13 84260184 84260403 -17612766 - L1ME LINE L1 -467 5703 5491 225 194 376 0 chr13 84260457 84260550 -17612619 - MIR SINE MIR -6 256 129 718 231 80 62 chr13 84260779 84261116 -17612053 + MER57A LTR ERV1 60 403 0 442 264 61 57 chr13 84261119 84261365 -17611804 + MER57A-int LTR ERV1 3 249 -7288 1145 236 116 23 chr13 84261525 84262050 -17611119 + MER57A-int LTR ERV1 882 1455 -3481 2166 133 0 3 chr13 84262092 84262394 -17610775 + AluSx SINE Alu 1 301 -11 411 180 90 30 chr13 84262643 84262743 -17610426 + MER34 LTR ERV1 132 237 -305 271 130 111 0 chr13 84262745 84262799 -17610370 + MER34 LTR ERV1 478 537 -5 3118 214 91 73 chr13 84262812 84264646 -17608523 + MER57A-int LTR ERV1 1874 5591 -1500 313 302 22 58 chr13 84264643 84264868 -17608301 + MER57A-int LTR ERV1 6457 6673 -864 * 417 320 0 0 chr13 84264774 84264921 -17608248 + MER70-int LTR ERVL 4538 4684 -339 342 45 0 0 chr13 84265555 84265599 -17607570 + (TA)n Simple_repeat Simple_repeat 1 44 0 1006 292 8 35 chr13 84266102 84266499 -17606670 + MER57A-int LTR ERV1 6759 7144 -393 498 243 53 116 chr13 84266499 84266904 -17606265 + MER57A LTR ERV1 1 385 -18 2166 116 7 0 chr13 84266904 84267196 -17605973 - AluSx SINE Alu -18 294 1 498 243 53 116 chr13 84267196 84267214 -17605955 + MER57A LTR ERV1 385 403 0 665 203 0 70 chr13 84267356 84267499 -17605670 - FLAM_A SINE Alu 0 133 1 2815 189 35 71 chr13 84267663 84268371 -17604798 - MER44D DNA MER2_type 0 605 51 531 212 9 0 chr13 84268373 84268486 -17604683 - MER44D DNA MER2_type -588 117 4 430 326 16 0 chr13 84268966 84269095 -17604074 - L2 LINE L2 -1 3271 3141 2841 226 74 11 chr13 84269584 84270681 -17602488 + L1ME1 LINE L1 4986 6161 -5 269 282 0 14 chr13 84270891 84270962 -17602207 + L2 LINE L2 3238 3307 -6 384 22 0 0 chr13 84271801 84271846 -17601323 + (TG)n Simple_repeat Simple_repeat 2 46 0 219 294 229 9 chr13 84272485 84272594 -17600575 + L2 LINE L2 3177 3309 -4 220 318 0 0 chr13 84273209 84273272 -17599897 + (TA)n Simple_repeat Simple_repeat 1 63 0 195 271 21 0 chr13 84273672 84273720 -17599449 - L2 LINE L2 -1238 2076 2028 254 333 159 32 chr13 84274040 84274166 -17599003 - MIR3 SINE MIR -49 159 18 2321 143 50 19 chr13 84274166 84274406 -17598763 - Tigger2a DNA MER2_type -2274 434 174 3230 95 23 0 chr13 84274406 84274849 -17598320 - MLT2A2 LTR ERVL 0 453 1 2321 143 50 19 chr13 84274849 84275029 -17598140 - Tigger2a DNA MER2_type -2534 174 1 878 180 10 36 chr13 84275034 84275228 -17597941 + MER5A DNA MER1_type 1 189 0 338 186 57 0 chr13 84275333 84275403 -17597766 - MER58 DNA MER1_type -96 245 172 2190 102 0 7 chr13 84275759 84276053 -17597116 - AluSx SINE Alu -20 292 1 384 255 0 39 chr13 84276283 84276385 -17596784 - MIR3 SINE MIR -11 197 100 240 294 56 16 chr13 84276455 84276581 -17596588 + MLT1I LTR MaLR 75 205 -204 267 260 0 13 chr13 84276699 84276776 -17596393 + MLT1I LTR MaLR 334 409 0 379 241 0 0 chr13 84276777 84276855 -17596314 - MIR SINE MIR -102 106 29 2142 134 0 0 chr13 84277271 84277563 -17595606 - AluSx SINE Alu -20 292 1 202 322 34 0 chr13 84278545 84278604 -17594565 - L2 LINE L2 -27 3286 3226 40615 36 21 1 chr13 84278646 84284685 -17588484 + L1PA3 LINE L1 2 6164 0 220 355 28 28 chr13 84285154 84285261 -17587908 - L2 LINE L2 -15 3257 3151 306 0 0 0 chr13 84285606 84285640 -17587529 + (CA)n Simple_repeat Simple_repeat 2 35 0 210 328 112 24 chr13 84286038 84286163 -17587006 - L3 LINE CR1 -1205 372 237 220 333 71 43 chr13 84286890 84287031 -17586138 - L2 LINE L2 -6 3266 3122 188 294 15 15 chr13 84287213 84287281 -17585888 + L2 LINE L2 3017 3084 -188 235 241 96 0 chr13 84287860 84287943 -17585226 - MIR SINE MIR 0 262 172 481 259 21 0 chr13 84287943 84288086 -17585083 - HAL1 LINE L1 -2344 163 18 378 291 0 0 chr13 84288129 84288208 -17584961 + MIR SINE MIR 7 85 -177 1234 191 84 148 chr13 84288208 84288576 -17584593 + HAL1 LINE L1 933 1224 -1283 1741 157 23 17 chr13 84288576 84288876 -17584293 + AluJb SINE Alu 1 302 -10 1234 191 84 148 chr13 84288876 84289305 -17583864 + HAL1 LINE L1 1224 1679 -828 1414 114 85 12 chr13 84289310 84289556 -17583613 + MER39B LTR ERV1 5 268 -385 891 132 0 0 chr13 84289566 84289695 -17583474 + FLAM_C SINE Alu 11 139 -4 534 31 0 0 chr13 84289715 84289779 -17583390 + (CA)n Simple_repeat Simple_repeat 1 64 0 504 32 0 0 chr13 84290004 84290066 -17583103 + (CA)n Simple_repeat Simple_repeat 1 62 0 598 231 109 6 chr13 84290071 84290227 -17582942 + FAM SINE Alu 1 172 -3 2044 149 44 18 chr13 84290231 84290620 -17582549 + MER39B LTR ERV1 255 653 0 344 213 75 0 chr13 84290620 84290714 -17582455 + HAL1 LINE L1 1677 1777 -730 180 176 0 0 chr13 84290891 84290925 -17582244 + (CA)n Simple_repeat Simple_repeat 2 35 0 894 206 112 9 chr13 84290927 84291141 -17582028 - MIR SINE MIR -13 249 14 352 310 28 79 chr13 84291628 84291844 -17581325 + L1ME3A LINE L1 5966 6170 0 604 152 96 0 chr13 84291883 84292008 -17581161 - LTR26B LTR ERV1 -129 402 266 2104 112 37 35 chr13 84292056 84292430 -17580739 - THE1C LTR MaLR 0 375 1 893 236 143 26 chr13 84293481 84293893 -17579276 + LTR1B LTR ERV1 60 1217 -328 1802 176 112 19 chr13 84294175 84294367 -17578802 + MLT1C LTR MaLR 8 181 -286 1672 162 19 23 chr13 84294367 84294675 -17578494 + AluJb SINE Alu 6 312 0 1802 176 112 19 chr13 84294675 84294903 -17578266 + MLT1C LTR MaLR 181 467 0 786 143 15 45 chr13 84294941 84295074 -17578095 + FLAM_C SINE Alu 1 129 -4 1996 103 11 0 chr13 84295665 84295937 -17577232 - AluSx SINE Alu -8 304 30 208 298 0 0 chr13 84295950 84296007 -17577162 + MER5B DNA MER1_type 46 102 -76 826 224 129 113 chr13 84296025 84296520 -17576649 + MER21B LTR ERV1 13 515 -348 4582 156 1 11 chr13 84296523 84296838 -17576331 + MER50 LTR ERV1 1 318 -416 4247 112 39 3 chr13 84296838 84297429 -17575740 - LTR9 LTR ERV1 0 612 1 4582 156 1 11 chr13 84297429 84297831 -17575338 + MER50 LTR ERV1 318 711 -23 781 206 31 101 chr13 84297833 84297878 -17575291 + MER21B LTR ERV1 518 565 -298 3411 121 16 71 chr13 84297878 84298439 -17574730 - LTR26B LTR ERV1 0 531 2 781 206 31 101 chr13 84298439 84298650 -17574519 + MER21B LTR ERV1 565 756 -107 455 232 11 0 chr13 84298789 84298884 -17574285 - MER81 DNA DNA -7 107 12 1040 308 9 3 chr13 84298915 84299249 -17573920 + LTR16B LTR ERVL 129 464 0 1615 154 0 69 chr13 84299265 84299570 -17573599 - AluJo SINE Alu -20 292 9 317 179 15 30 chr13 84299572 84299639 -17573530 + MER5B DNA MER1_type 113 178 0 185 139 23 0 chr13 84299994 84300037 -17573132 + (TG)n Simple_repeat Simple_repeat 2 45 0 404 307 0 0 chr13 84300708 84300848 -17572321 + (CA)n Simple_repeat Simple_repeat 1 140 0 342 297 171 61 chr13 84301128 84301197 -17571972 + L2 LINE L2 1731 1791 -1481 1699 211 42 14 chr13 84301197 84301552 -17571617 + MLT1A1 LTR MaLR 1 365 0 342 297 171 61 chr13 84301552 84302048 -17571121 + L2 LINE L2 1791 2231 -1041 194 0 39 0 chr13 84302048 84302074 -17571095 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 342 297 171 61 chr13 84302074 84302134 -17571035 + L2 LINE L2 2231 2283 -989 1596 237 33 19 chr13 84302134 84302501 -17570668 - MLT1A2 LTR MaLR -1 373 2 342 297 171 61 chr13 84302501 84303168 -17570001 + L2 LINE L2 2283 3178 -94 1156 185 55 121 chr13 84303177 84303405 -17569764 - MLT1A1 LTR MaLR -6 359 162 1715 174 20 10 chr13 84303405 84303709 -17569460 - AluJo SINE Alu -5 307 1 1156 185 55 121 chr13 84303709 84303843 -17569326 - MLT1A1 LTR MaLR -203 162 21 553 247 90 126 chr13 84305125 84305382 -17567787 + L2 LINE L2 2835 3071 -201 2498 179 28 11 chr13 84305382 84305840 -17567329 - MLT1C LTR MaLR -1 466 1 553 247 90 126 chr13 84305840 84306036 -17567133 + L2 LINE L2 3071 3272 0 882 144 38 0 chr13 84307160 84307315 -17565854 + FRAM SINE Alu 16 175 0 315 275 46 0 chr13 84307317 84307426 -17565743 + MIR SINE MIR 141 254 -8 263 246 186 8 chr13 84307433 84307551 -17565618 - MIR SINE MIR -96 166 28 391 292 13 26 chr13 84307600 84307754 -17565415 - L2 LINE L2 0 3313 3162 22 0 0 0 chr13 84307802 84307824 -17565345 + AT_rich Low_complexity Low_complexity 1 22 0 405 206 0 49 chr13 84307836 84307938 -17565231 + L1M4 LINE L1 2 98 -6444 5438 165 22 38 chr13 84307939 84308637 -17564532 - L1MA9 LINE L1 -11 6301 5593 2237 121 0 10 chr13 84308637 84308950 -17564219 - AluSg SINE Alu 0 310 1 5438 165 22 38 chr13 84308950 84309717 -17563452 - L1MA9 LINE L1 -719 5593 4855 3914 226 52 79 chr13 84309746 84310955 -17562214 + L1M4 LINE L1 66 1241 -5301 2559 197 39 65 chr13 84310956 84311525 -17561644 - MLT2B3 LTR ERVL 0 554 1 3183 180 54 9 chr13 84311539 84312185 -17560984 + L1MB7 LINE L1 5509 6183 -1 202 272 172 41 chr13 84312266 84312435 -17560734 - L2 LINE L2 -245 3027 2837 571 301 159 54 chr13 84312781 84313199 -17559970 - L2 LINE L2 -647 2667 2294 11878 23 1 0 chr13 84313199 84315268 -17557901 - L1PA3 LINE L1 0 6155 4080 571 301 159 54 chr13 84315268 84315706 -17557463 - L2 LINE L2 -1020 2294 1721 3712 79 0 5 chr13 84316118 84316563 -17556606 - MLT2A1 LTR ERVL -1 443 1 479 88 0 0 chr13 84316565 84316633 -17556536 - HERVL-A1 LTR ERVL -2 5652 5585 42937 71 29 1 chr13 84316734 84322167 -17551002 - HERVL-A1 LTR ERVL -67 5587 1 3572 69 0 0 chr13 84322177 84322611 -17550558 - MLT2A1 LTR ERVL -10 434 1 498 345 110 7 chr13 84322778 84323079 -17550090 - L2 LINE L2 -38 3275 2944 4478 97 22 45 chr13 84323102 84324180 -17548989 + SVA Other Other 9 1386 0 14160 174 15 9 chr13 84324348 84328103 -17545066 - L1PB1 LINE L1 -3 6148 2375 300 275 12 0 chr13 84329104 84329184 -17543985 + GA-rich Low_complexity Low_complexity 2 82 0 202 267 22 0 chr13 84329570 84329615 -17543554 - MER91A DNA MER1_type -35 161 116 2203 186 17 3 chr13 84330951 84331311 -17541858 + MLT1A1 LTR MaLR 1 365 0 6450 188 117 67 chr13 84331311 84332963 -17540206 + MLT1A1-int LTR MaLR 1 1735 0 1755 218 17 20 chr13 84332969 84333323 -17539846 + MLT1A1 LTR MaLR 13 365 0 423 224 231 22 chr13 84333338 84333472 -17539697 + MLT1H LTR MaLR 382 543 -6 2846 162 24 7 chr13 84333865 84334322 -17538847 + MLT1C LTR MaLR 3 467 0 1047 245 34 46 chr13 84335386 84335709 -17537460 + L1MEc LINE L1 29 347 -6049 722 148 0 0 chr13 84335752 84335853 -17537316 - AluJb SINE Alu -16 296 196 3150 246 83 1 chr13 84335859 84336798 -17536371 - L1MEc LINE L1 -1250 4965 3950 242 235 20 0 chr13 84337232 84337283 -17535886 + MER70B LTR ERVL 454 505 -73 2165 241 81 9 chr13 84337316 84337959 -17535210 - L1MEc LINE L1 -2275 3940 3252 1342 188 29 153 chr13 84337978 84338468 -17534701 - LTR47A LTR ERVL -20 432 4 2945 227 58 63 chr13 84338468 84339375 -17533794 - L1MEc LINE L1 -2968 3247 2367 1837 168 3 14 chr13 84339375 84339672 -17533497 - AluSx SINE Alu -18 294 1 2945 227 58 63 chr13 84339672 84340058 -17533111 - L1MEc LINE L1 -3848 2367 1981 1973 168 12 3 chr13 84340058 84340397 -17532772 - MER47A DNA MER2_type 0 366 25 3012 135 17 2 chr13 84340398 84340820 -17532349 - MSTA LTR MaLR 0 428 1 6282 180 14 1 chr13 84340820 84341871 -17531298 - MSTA-int LTR MaLR 0 1651 587 7274 76 175 3 chr13 84341875 84342955 -17530214 - MER11A LTR ERVK 0 1266 1 3682 147 2 3 chr13 84342955 84343525 -17529644 - MSTA-int LTR MaLR -1081 570 2 2436 132 126 0 chr13 84343526 84343906 -17529263 - MSTA LTR MaLR 0 428 1 2500 249 37 52 chr13 84343931 84344657 -17528512 - L1MEc LINE L1 -4425 1971 1267 270 0 0 0 chr13 84344657 84344687 -17528482 + (CA)n Simple_repeat Simple_repeat 1 30 0 2500 249 37 52 chr13 84344687 84345122 -17528047 - L1MEc LINE L1 -5129 1267 827 258 194 97 42 chr13 84345712 84345784 -17527385 - MER69 DNA AcHobo -1 2525 2450 496 252 107 31 chr13 84345804 84345963 -17527206 + L2 LINE L2 3143 3313 0 268 242 15 0 chr13 84345965 84346031 -17527138 + L3 LINE CR1 1510 1576 -1 522 106 21 0 chr13 84347398 84347492 -17525677 - L1MA9 LINE L1 -8 6304 6209 25 0 0 0 chr13 84348171 84348196 -17524973 + AT_rich Low_complexity Low_complexity 1 25 0 39 50 0 0 chr13 84348594 84348654 -17524515 + AT_rich Low_complexity Low_complexity 1 60 0 617 279 35 30 chr13 84348890 84349087 -17524082 + MIR3 SINE MIR 6 203 -5 2138 106 13 10 chr13 84349253 84349565 -17523604 + AluSp SINE Alu 1 313 0 222 192 0 0 chr13 84349581 84349633 -17523536 + T-rich Low_complexity Low_complexity 1 52 0 2131 201 60 14 chr13 84349913 84350425 -17522744 + MLT1F LTR MaLR 7 542 0 267 193 70 0 chr13 84351520 84351577 -17521592 - LTR52 LTR ERVL -2 419 359 2117 130 36 33 chr13 84351577 84351939 -17521230 + THE1B LTR MaLR 1 363 -1 6301 163 23 4 chr13 84352038 84354260 -17518909 + L1PA16 LINE L1 3897 6157 -9 22 35 0 0 chr13 84354260 84354289 -17518880 + AT_rich Low_complexity Low_complexity 1 29 0 395 292 115 0 chr13 84354289 84354419 -17518750 + L2 LINE L2 3118 3262 -10 1370 51 17 0 chr13 84354503 84354680 -17518489 + L1PA4 LINE L1 5976 6155 0 519 165 0 96 chr13 84354907 84355022 -17518147 - L2 LINE L2 -10 3303 3200 533 338 74 9 chr13 84355068 84355299 -17517870 - L2 LINE L2 -239 3074 2829 208 313 50 30 chr13 84355465 84355564 -17517605 - MIR SINE MIR -50 212 112 1998 119 0 70 chr13 84355566 84355878 -17517291 + AluSx SINE Alu 1 290 -22 38 0 0 0 chr13 84355878 84355916 -17517253 + AT_rich Low_complexity Low_complexity 1 38 0 290 320 62 10 chr13 84355934 84356031 -17517138 - MIR SINE MIR -141 121 20 190 229 0 0 chr13 84356067 84356102 -17517067 + MIR SINE MIR 217 251 -11 235 174 16 24 chr13 84356247 84356305 -17516864 + MIR SINE MIR 54 115 -93 334 165 59 24 chr13 84356891 84356961 -17516208 + LTR16A1 LTR ERVL 59 125 -332 3913 126 14 87 chr13 84356961 84357241 -17515928 + L1MA8 LINE L1 5509 5808 -483 1842 124 0 35 chr13 84357241 84357523 -17515646 + AluSx SINE Alu 11 282 -30 261 0 0 0 chr13 84357526 84357555 -17515614 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3913 126 14 87 chr13 84357555 84358114 -17515055 + L1MA8 LINE L1 5810 6291 0 334 165 59 24 chr13 84358114 84358128 -17515041 + LTR16A1 LTR ERVL 125 146 -311 23 0 0 0 chr13 84358621 84358644 -17514525 + AT_rich Low_complexity Low_complexity 1 23 0 2385 164 55 2 chr13 84359438 84359895 -17513274 - Tigger3b DNA MER2_type -750 481 1 3495 244 36 7 chr13 84360157 84361290 -17511879 + L1P LINE L1 2376 3541 -2605 1050 280 89 10 chr13 84461370 84461884 -17411285 - L1M4 LINE L1 -825 5321 4767 808 136 129 13 chr13 84461887 84462042 -17411127 + THE1C LTR MaLR 1 173 -202 26 74 0 0 chr13 84462541 84462595 -17410574 + AT_rich Low_complexity Low_complexity 1 54 0 186 299 155 41 chr13 84463546 84463837 -17409332 + L2 LINE L2 2949 3272 0 218 330 11 0 chr13 84464112 84464200 -17408969 - L3 LINE CR1 -1 1576 1488 196 346 81 27 chr13 84465241 84465426 -17407743 + L2 LINE L2 2622 2816 -498 286 262 41 48 chr13 84465960 84466105 -17407064 + MER33 DNA MER1_type 4 147 -177 2008 94 7 49 chr13 84466386 84466693 -17406476 - AluJo SINE Alu -18 294 1 1029 205 16 63 chr13 84467521 84467775 -17405394 - L1MD2 LINE L1 -14 6345 6104 1818 197 104 7 chr13 84469346 84469768 -17403401 + L1MC2 LINE L1 5874 6336 -8 1812 163 3 10 chr13 84470144 84470444 -17402725 - AluJo SINE Alu -14 298 1 201 156 0 0 chr13 84470574 84470606 -17402563 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 272 350 14 0 chr13 84471118 84471258 -17401911 - L3 LINE CR1 -224 1353 1212 454 192 10 10 chr13 84471412 84471511 -17401658 - MER5B DNA MER1_type -5 173 75 320 313 61 6 chr13 84471603 84471766 -17401403 - L3 LINE CR1 -631 946 775 1884 137 3 7 chr13 84472438 84472722 -17400447 - AluJo SINE Alu -25 287 5 235 254 153 8 chr13 84473459 84473577 -17399592 - L1MD2 LINE L1 -2031 5777 5643 2647 180 48 4 chr13 84475973 84476511 -17396658 + L1MB3 LINE L1 5615 6176 -7 2330 98 3 7 chr13 84477474 84477780 -17395389 + AluSx SINE Alu 1 305 -7 1405 99 0 5 chr13 84477913 84478104 -17395065 + AluSp SINE Alu 116 305 -8 1608 71 13 59 chr13 84478484 84478723 -17394446 + MER30 DNA MER1_type 3 230 0 422 342 7 0 chr13 84479675 84479827 -17393342 - MIR SINE MIR -13 249 97 243 0 0 0 chr13 84480055 84480082 -17393087 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3603 73 5 0 chr13 84480180 84480629 -17392540 + MLT2A2 LTR ERVL 1 451 -2 1665 171 24 14 chr13 84481626 84481918 -17391251 - AluJo SINE Alu -17 295 1 306 0 0 0 chr13 84483976 84484010 -17389159 + (TG)n Simple_repeat Simple_repeat 2 35 0 2301 96 3 0 chr13 84484011 84484302 -17388867 - AluSx SINE Alu -20 292 1 2077 117 7 3 chr13 84484920 84485237 -17387932 + AluSx SINE Alu 1 318 0 850 225 0 11 chr13 84485280 84485458 -17387711 + FRAM SINE Alu 1 176 0 534 133 24 0 chr13 84485471 84485554 -17387615 - L1M3 LINE L1 -403 5780 5696 267 31 0 0 chr13 84486006 84486038 -17387131 + (T)n Simple_repeat Simple_repeat 1 32 0 610 232 72 11 chr13 84487270 84487451 -17385718 + L1MD3 LINE L1 7804 7995 0 303 113 0 0 chr13 84488025 84488078 -17385091 + (TTCA)n Simple_repeat Simple_repeat 3 55 0 299 297 17 34 chr13 84488194 84488312 -17384857 - MER5A DNA MER1_type -24 165 50 425 275 127 0 chr13 84489314 84489456 -17383713 - MER5B DNA MER1_type -6 172 13 27 73 0 0 chr13 84489602 84489657 -17383512 + AT_rich Low_complexity Low_complexity 1 55 0 300 288 151 14 chr13 84490052 84490198 -17382971 - MIR3 SINE MIR -7 201 36 933 71 79 0 chr13 84492611 84492737 -17380432 - MER85 DNA T2_type 0 139 4 207 0 0 0 chr13 84493128 84493151 -17380018 + (CA)n Simple_repeat Simple_repeat 2 24 0 219 327 37 28 chr13 84493465 84493572 -17379597 + L3b LINE CR1 1388 1495 -88 459 113 0 0 chr13 84495710 84495781 -17377388 + (CCA)n Simple_repeat Simple_repeat 2 72 0 22 0 0 0 chr13 84499056 84499078 -17374091 + AT_rich Low_complexity Low_complexity 1 22 0 1726 150 0 42 chr13 84500110 84500417 -17372752 - AluJb SINE Alu -18 294 1 27 49 0 0 chr13 84500423 84500464 -17372705 + AT_rich Low_complexity Low_complexity 1 41 0 535 175 19 75 chr13 84500519 84500590 -17372579 + Charlie5 DNA MER1_type 2469 2542 -82 2597 30 0 13 chr13 84500590 84500895 -17372274 - AluY SINE Alu -10 301 1 535 175 19 75 chr13 84500895 84500983 -17372186 + Charlie5 DNA MER1_type 2542 2619 -5 312 283 40 0 chr13 84502650 84502749 -17370420 - MIR SINE MIR -113 149 47 243 88 0 0 chr13 84502976 84503010 -17370159 + (TG)n Simple_repeat Simple_repeat 1 34 0 2045 129 0 10 chr13 84503259 84503554 -17369615 - AluSx SINE Alu -1 311 20 2493 66 3 3 chr13 84503562 84503866 -17369303 - AluY SINE Alu -7 304 1 590 150 79 64 chr13 84504392 84504532 -17368637 + MLT1C LTR MaLR 1 142 -325 291 28 0 0 chr13 84504537 84504573 -17368596 + (CA)n Simple_repeat Simple_repeat 2 37 0 288 0 0 0 chr13 84504670 84504702 -17368467 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr13 84504741 84504767 -17368402 + (CA)n Simple_repeat Simple_repeat 2 27 0 1046 177 91 42 chr13 84504770 84505035 -17368134 + MLT1C LTR MaLR 189 466 -1 2652 56 0 0 chr13 84505702 84506006 -17367163 - AluSc SINE Alu -5 304 1 1292 178 101 4 chr13 84506554 84506830 -17366339 - AluJo SINE Alu -7 305 3 527 285 6 6 chr13 84507739 84507904 -17365265 - MIR SINE MIR -35 227 63 845 158 0 0 chr13 84508687 84508826 -17364343 - FRAM SINE Alu -11 165 27 909 206 15 20 chr13 84509098 84509302 -17363867 - MLT1A2 LTR MaLR -15 359 157 365 216 11 17 chr13 84509313 84509497 -17363672 + CT-rich Low_complexity Low_complexity 1 182 0 1537 181 59 10 chr13 84509497 84509785 -17363384 - AluJo SINE Alu -10 302 1 456 261 102 13 chr13 84509787 84509944 -17363225 - MLT1A2 LTR MaLR -219 171 1 1810 176 3 6 chr13 84510379 84510692 -17362477 - AluJo SINE Alu 0 312 1 21 36 0 0 chr13 84510730 84510758 -17362411 + AT_rich Low_complexity Low_complexity 1 28 0 2379 83 0 0 chr13 84510767 84511057 -17362112 + AluY SINE Alu 1 290 -21 307 210 199 81 chr13 84513272 84513444 -17359725 + MIR SINE MIR 23 220 -42 2230 122 0 0 chr13 84513444 84513748 -17359421 + AluSq SINE Alu 1 304 -9 307 210 199 81 chr13 84513748 84513761 -17359408 + MIR SINE MIR 220 230 -32 21 0 0 0 chr13 84514670 84514691 -17358478 + AT_rich Low_complexity Low_complexity 1 21 0 1006 186 41 5 chr13 84517729 84517949 -17355220 - L1MB2 LINE L1 0 6171 5944 3542 181 55 13 chr13 84519061 84519162 -17354007 - MER44D DNA MER2_type -1888 599 504 3165 187 87 9 chr13 84519162 84519830 -17353339 - MER72 LTR ERV1 0 722 3 3542 181 55 13 chr13 84519830 84520419 -17352750 - MER44D DNA MER2_type -1983 504 8 2246 109 0 0 chr13 84520808 84521093 -17352076 + AluSx SINE Alu 1 285 -27 784 254 115 34 chr13 84521206 84521763 -17351406 - L2 LINE L2 -1 3312 2708 2347 70 28 0 chr13 84521911 84522195 -17350974 + AluSx SINE Alu 3 294 -18 384 317 57 12 chr13 84523040 84523286 -17349883 - MIR SINE MIR -5 257 1 1344 114 29 41 chr13 84523485 84523730 -17349439 - L1MB3 LINE L1 -1 6182 5941 22 56 0 0 chr13 84524671 84524707 -17348462 + AT_rich Low_complexity Low_complexity 1 36 0 378 0 0 0 chr13 84524866 84524908 -17348261 + (CA)n Simple_repeat Simple_repeat 1 42 0 232 228 0 0 chr13 84525356 84525413 -17347756 + CT-rich Low_complexity Low_complexity 1 57 0 375 269 59 0 chr13 84525446 84525565 -17347604 - MIR SINE MIR -43 219 94 210 376 0 0 chr13 84525902 84525995 -17347174 - MIR SINE MIR -20 242 150 1176 224 48 51 chr13 84526032 84526407 -17346762 + MLT1A2 LTR MaLR 1 374 0 195 171 24 0 chr13 84526428 84526469 -17346700 + L2 LINE L2 2985 3026 -246 2217 120 16 61 chr13 84526641 84527017 -17346152 - THE1B LTR MaLR -5 359 1 1967 92 0 72 chr13 84527673 84528001 -17345168 - AluSx SINE Alu 0 306 1 1707 157 10 20 chr13 84528514 84528807 -17344362 + AluJo SINE Alu 1 290 -22 306 0 0 0 chr13 84528967 84529001 -17344168 + (TG)n Simple_repeat Simple_repeat 2 35 0 2890 171 29 50 chr13 84529525 84530178 -17342991 - L1MB3 LINE L1 0 6183 5545 2016 146 128 13 chr13 84530533 84530917 -17342252 - MSTA LTR MaLR 0 428 1 2132 73 0 4 chr13 84531799 84532059 -17341110 - AluSx SINE Alu -53 259 1 2299 104 0 0 chr13 84532765 84533062 -17340107 + AluSg SINE Alu 1 297 -13 220 250 172 0 chr13 84533302 84533366 -17339803 - L2 LINE L2 -9 3263 3189 2644 145 102 75 chr13 84533664 84533830 -17339339 + L1MC2 LINE L1 5654 5814 -530 2229 116 0 3 chr13 84533830 84534124 -17339045 + AluSq SINE Alu 1 293 -20 2644 145 102 75 chr13 84534124 84534156 -17339013 + L1MC2 LINE L1 5814 5844 -500 2231 115 3 0 chr13 84534156 84534452 -17338717 + AluSp SINE Alu 1 297 -16 2644 145 102 75 chr13 84534452 84534916 -17338253 + L1MC2 LINE L1 5844 6335 -9 588 209 25 38 chr13 84535348 84535506 -17337663 - MER33 DNA MER1_type -159 165 10 249 349 116 25 chr13 84535538 84536065 -17337104 - L2 LINE L2 -557 2757 2183 672 256 56 0 chr13 84537137 84537297 -17335872 - MER58B DNA MER1_type 0 341 173 389 247 147 0 chr13 84537342 84537497 -17335672 - MIR SINE MIR -34 228 45 1435 95 0 0 chr13 84537601 84537790 -17335379 - AluSg/x SINE Alu -9 301 113 1367 201 110 12 chr13 84537790 84538118 -17335051 + L1MB2 LINE L1 5812 6171 0 336 278 9 28 chr13 84538365 84538473 -17334696 + L1ME3A LINE L1 6022 6127 -43 1957 209 79 11 chr13 84538802 84539256 -17333913 - L1MB2 LINE L1 0 6171 5687 432 211 179 0 chr13 84540022 84540145 -17333024 - MER31B LTR ERV1 -321 145 1 1263 201 19 19 chr13 84540146 84540405 -17332764 - MER58 DNA MER1_type -82 259 1 241 305 118 37 chr13 84540679 84540866 -17332303 + MIR SINE MIR 52 253 -9 2180 90 19 16 chr13 84540938 84541249 -17331920 + AluSx SINE Alu 1 312 0 1312 255 13 21 chr13 84541859 84542236 -17330933 - L1MC2 LINE L1 -9 6335 5962 1254 191 81 130 chr13 84542246 84542801 -17330368 + MER74B LTR ERVL 69 596 -26 1856 176 98 28 chr13 84542809 84542878 -17330291 - MSTB LTR MaLR 0 426 363 2528 74 0 0 chr13 84542878 84543189 -17329980 + AluY SINE Alu 1 311 0 1856 176 98 28 chr13 84543189 84543517 -17329652 - MSTB LTR MaLR -63 363 1 492 230 164 0 chr13 84544286 84544438 -17328731 + L1MC5 LINE L1 7333 7509 -452 467 194 61 10 chr13 84544580 84544678 -17328491 - MSTB LTR MaLR -217 209 107 252 264 33 11 chr13 84544841 84544932 -17328237 + L1ME3 LINE L1 6044 6136 -26 2306 98 3 0 chr13 84544938 84545225 -17327944 - AluSp SINE Alu -25 288 1 28 0 0 0 chr13 84545250 84545278 -17327891 + AT_rich Low_complexity Low_complexity 1 28 0 488 144 67 0 chr13 84545330 84545420 -17327749 + L1MB1 LINE L1 6068 6163 -5 269 307 44 15 chr13 84545927 84546064 -17327105 + L1MC5 LINE L1 7500 7640 -321 840 224 35 13 chr13 84546115 84546343 -17326826 + L1ME LINE L1 5555 5787 -377 634 206 42 42 chr13 84546414 84546603 -17326566 + MER33 DNA MER1_type 40 228 -96 1861 160 10 3 chr13 84546613 84546907 -17326262 + AluJb SINE Alu 1 296 -16 826 197 48 48 chr13 84546994 84547182 -17325987 + MER5A DNA MER1_type 1 188 -1 984 241 102 34 chr13 84547316 84547756 -17325413 - L1MEc LINE L1 -3161 3054 2585 916 133 259 7 chr13 84547756 84548037 -17325132 - Tigger3(Golem) DNA MER2_type 0 3029 1 1046 222 64 66 chr13 84548037 84548169 -17325000 - L1MEc LINE L1 -3631 2584 2453 2077 98 29 0 chr13 84548169 84548480 -17324689 - AluSx SINE Alu 0 319 1 1046 222 64 66 chr13 84548480 84548875 -17324294 - L1MEc LINE L1 -3762 2453 2110 280 203 58 14 chr13 84548875 84548944 -17324225 + MER6 DNA MER2_type 794 865 0 3099 256 119 19 chr13 84548947 84550040 -17323129 - L1MEc LINE L1 -5160 1236 35 2197 96 30 7 chr13 84550183 84550484 -17322685 - AluY SINE Alu -3 308 1 358 271 166 11 chr13 84550691 84550872 -17322297 + MIR SINE MIR 47 255 -7 1095 256 55 0 chr13 84551104 84551393 -17321776 + MER7A DNA MER2_type 1 303 -43 1081 222 80 78 chr13 84551543 84551638 -17321531 + MLT1B LTR MaLR 1 94 -296 1934 141 3 0 chr13 84551638 84551929 -17321240 - AluSx SINE Alu -6 306 15 1081 222 80 78 chr13 84551929 84552220 -17320949 + MLT1B LTR MaLR 94 388 -2 1830 139 64 0 chr13 84553529 84553810 -17319359 + AluJb SINE Alu 1 299 -13 587 336 103 27 chr13 84554194 84554720 -17318449 + L2 LINE L2 2231 2796 -518 1152 246 91 19 chr13 84554922 84555283 -17317886 + MER74B LTR ERVL 75 461 -161 2208 125 0 0 chr13 84555284 84555587 -17317582 - AluSg SINE Alu -7 303 1 315 284 154 76 chr13 84555596 84556043 -17317126 - L1ME LINE L1 -301 5820 5339 290 295 84 0 chr13 84556321 84556416 -17316753 + MIR SINE MIR 21 123 -139 329 43 21 0 chr13 84557420 84557467 -17315702 + (TG)n Simple_repeat Simple_repeat 2 49 0 351 0 0 0 chr13 84558683 84558722 -17314447 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1828 134 29 4 chr13 84558722 84558998 -17314171 - AluSx SINE Alu -29 283 1 353 215 11 0 chr13 84560363 84560456 -17312713 + (CAT)n Simple_repeat Simple_repeat 2 95 0 2213 119 3 0 chr13 84560479 84560774 -17312395 - AluSx SINE Alu -16 296 1 3598 34 0 0 chr13 84560914 84561332 -17311837 - L1PA3 LINE L1 0 6155 5738 347 305 217 8 chr13 84561485 84561872 -17311297 - L2 LINE L2 -10 3303 2836 244 311 90 46 chr13 84561897 84562308 -17310861 - L2 LINE L2 -626 2688 2260 2386 104 0 0 chr13 84563624 84563933 -17309236 - AluSg SINE Alu -1 309 1 450 49 0 0 chr13 84565070 84565131 -17308038 + (CA)n Simple_repeat Simple_repeat 2 62 0 1820 153 4 7 chr13 84565689 84565970 -17307199 + AluJb SINE Alu 1 280 -32 189 107 0 0 chr13 84565970 84565998 -17307171 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 393 316 42 11 chr13 84566016 84566206 -17306963 - L1MC5 LINE L1 -409 7552 7357 2348 161 35 10 chr13 84566220 84566623 -17306546 - MSTB1 LTR MaLR -1 431 19 318 280 17 8 chr13 84566807 84566925 -17306244 - L1MC4 LINE L1 -802 7240 7122 232 340 19 0 chr13 84566988 84567094 -17306075 - L1MC5 LINE L1 -855 7106 6999 2204 95 40 3 chr13 84567168 84567464 -17305705 - AluSx SINE Alu -5 307 1 5319 98 36 23 chr13 84567645 84568470 -17304699 - L1MA3 LINE L1 -103 6202 5367 2391 76 0 10 chr13 84568572 84568874 -17304295 + AluSc SINE Alu 5 303 -6 608 54 90 6 chr13 84570443 84570609 -17302560 + (TA)n Simple_repeat Simple_repeat 1 180 0 620 37 99 0 chr13 84570635 84570797 -17302372 + (TA)n Simple_repeat Simple_repeat 1 178 0 336 248 28 18 chr13 84570798 84570907 -17302262 - MIR SINE MIR -56 206 97 221 258 140 0 chr13 84571014 84571107 -17302062 + MIR SINE MIR 85 190 -72 1826 185 42 0 chr13 84571117 84571447 -17301722 + MER2 DNA MER2_type 1 344 0 1982 89 82 11 chr13 84571714 84571994 -17301175 + AluSx SINE Alu 1 300 -12 780 89 17 128 chr13 84571994 84572138 -17301031 + L1MA8 LINE L1 6129 6251 -40 1707 169 21 17 chr13 84572138 84572428 -17300741 - AluJb SINE Alu -21 291 1 780 89 17 128 chr13 84572428 84572462 -17300707 + L1MA8 LINE L1 6251 6287 -4 906 127 30 0 chr13 84573420 84573554 -17299615 + AluJo SINE Alu 1 138 -174 * 1322 174 4 17 chr13 84573553 84573788 -17299381 + AluJb SINE Alu 64 295 -17 2392 218 84 15 chr13 84574116 84574726 -17298443 - MER82 DNA MER2_type -1 652 1 2062 129 0 0 chr13 84575576 84575855 -17297314 - AluSx SINE Alu -33 279 1 189 0 0 0 chr13 84577550 84577571 -17295598 + (T)n Simple_repeat Simple_repeat 1 21 0 448 254 21 49 chr13 84577833 84577975 -17295194 - L1MA10 LINE L1 -11 6323 6186 2302 107 7 0 chr13 84578381 84578679 -17294490 + AluSx SINE Alu 1 300 -12 223 316 82 53 chr13 84579258 84579429 -17293740 + MIR SINE MIR 66 241 -21 212 193 175 18 chr13 84581810 84581867 -17291302 - L2 LINE L2 0 3272 3207 1817 157 28 0 chr13 84582646 84582933 -17290236 - AluJo SINE Alu -17 295 1 516 271 84 5 chr13 84582974 84583188 -17289981 - MIR SINE MIR -10 252 22 2032 138 0 28 chr13 84583565 84583883 -17289286 + AluJb SINE Alu 1 309 -3 830 120 30 15 chr13 84585876 84586009 -17287160 + AluJb SINE Alu 1 135 -177 1451 155 62 52 chr13 84586009 84586299 -17286870 + AluJo SINE Alu 1 293 -19 187 118 0 39 chr13 84587801 84587852 -17285317 + (GGA)n Simple_repeat Simple_repeat 2 50 0 197 310 78 17 chr13 84588962 84589078 -17284091 + MIR SINE MIR 65 187 -75 1991 146 0 29 chr13 84589199 84589515 -17283654 + AluJo SINE Alu 1 307 -5 236 336 84 9 chr13 84589524 84589631 -17283538 + MIR SINE MIR 29 143 -119 3365 194 22 33 chr13 84589762 84590395 -17282774 + Tigger6a DNA MER2_type 13 639 -958 2343 86 0 20 chr13 84590395 84590698 -17282471 + AluSp SINE Alu 7 303 -10 3365 194 22 33 chr13 84590698 84590760 -17282409 + Tigger6a DNA MER2_type 639 700 -383 262 98 16 16 chr13 84590857 84590918 -17282251 + (TAAA)n Simple_repeat Simple_repeat 2 62 0 195 237 0 0 chr13 84592211 84592249 -17280920 + L3b LINE CR1 1539 1576 -7 1056 253 21 26 chr13 84592606 84592946 -17280223 - L1MB8 LINE L1 -4 6174 5837 555 237 111 32 chr13 84594842 84595032 -17278137 - MER20 DNA MER1_type -14 205 1 23 54 0 0 chr13 84596751 84596788 -17276381 + AT_rich Low_complexity Low_complexity 1 37 0 1640 166 33 0 chr13 84598918 84599189 -17273980 + AluJb SINE Alu 24 303 -9 448 208 27 53 chr13 84599719 84599881 -17273288 - MER5B DNA MER1_type -5 184 20 22 0 0 0 chr13 84600737 84600759 -17272410 + AT_rich Low_complexity Low_complexity 1 22 0 531 0 0 0 chr13 84600772 84600831 -17272338 + (TG)n Simple_repeat Simple_repeat 2 60 0 2395 88 0 0 chr13 84600848 84601143 -17272026 - AluSq SINE Alu -18 295 1 905 157 129 0 chr13 84603208 84603386 -17269783 + MER3 DNA MER1_type 1 201 -8 2541 131 30 32 chr13 84604418 84604853 -17268316 + Tigger2a DNA MER2_type 1 434 0 762 291 178 33 chr13 84604989 84605711 -17267458 + L2 LINE L2 2386 3206 -107 294 309 10 10 chr13 84607680 84607777 -17265392 + L2 LINE L2 3134 3230 -42 2355 89 0 0 chr13 84607777 84608079 -17265090 + AluSc SINE Alu 1 302 -7 2488 71 7 0 chr13 84608349 84608658 -17264511 + AluY SINE Alu 1 311 0 215 235 0 0 chr13 84609091 84609142 -17264027 + L2 LINE L2 3222 3272 0 2036 154 17 25 chr13 84609190 84609548 -17263621 - THE1A LTR MaLR 0 355 1 1287 79 109 20 chr13 84611585 84611787 -17261382 + MER30 DNA MER1_type 11 230 0 656 234 63 6 chr13 84611794 84611952 -17261217 + MER3 DNA MER1_type 43 209 0 2388 86 7 0 chr13 84612949 84613252 -17259917 - AluSc SINE Alu -4 305 1 1718 168 58 0 chr13 84613560 84613852 -17259317 - AluJb SINE Alu -3 309 1 1963 132 3 45 chr13 84614490 84614801 -17258368 - AluSg SINE Alu -12 298 1 21 0 0 0 chr13 84614824 84614845 -17258324 + AT_rich Low_complexity Low_complexity 1 21 0 240 175 32 32 chr13 84615663 84615726 -17257443 - L2 LINE L2 -558 2756 2694 552 213 195 0 chr13 84616249 84616423 -17256746 - MER3 DNA MER1_type -1 208 1 2275 65 0 34 chr13 84616741 84617055 -17256114 + AluY SINE Alu 1 304 0 23 0 0 0 chr13 84617123 84617146 -17256023 + AT_rich Low_complexity Low_complexity 1 23 0 216 273 0 0 chr13 84617347 84617402 -17255767 - MER5B DNA MER1_type -3 175 121 216 250 23 0 chr13 84617427 84617555 -17255614 + (CA)n Simple_repeat Simple_repeat 1 131 0 545 168 26 0 chr13 84617570 84617725 -17255444 + (CA)n Simple_repeat Simple_repeat 1 159 0 671 260 6 17 chr13 84617940 84618113 -17255056 + MER5B DNA MER1_type 8 178 0 1415 162 0 73 chr13 84618439 84618711 -17254458 + AluJo SINE Alu 31 282 -30 558 0 0 0 chr13 84618728 84618790 -17254379 + (TG)n Simple_repeat Simple_repeat 2 63 0 198 167 0 0 chr13 84620253 84620289 -17252880 + A-rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr13 84620401 84620435 -17252734 + AT_rich Low_complexity Low_complexity 1 34 0 302 170 0 0 chr13 84620441 84620494 -17252675 - L1MC5 LINE L1 -104 7857 7805 180 135 0 0 chr13 84620494 84620531 -17252638 + (TA)n Simple_repeat Simple_repeat 2 38 0 270 0 0 0 chr13 84620533 84620563 -17252606 + (TC)n Simple_repeat Simple_repeat 1 30 0 245 214 18 0 chr13 84620590 84620646 -17252523 - L1MC5 LINE L1 -184 7777 7721 303 71 0 0 chr13 84621252 84621294 -17251875 - MADE1 DNA Mariner 0 80 39 332 121 35 0 chr13 84621411 84621469 -17251700 + MADE1 DNA Mariner 1 60 -20 233 228 51 76 chr13 84622008 84622087 -17251082 + MIR SINE MIR 20 96 -166 191 225 50 0 chr13 84622227 84622267 -17250902 - L2 LINE L2 -9 3263 3222 1627 168 50 0 chr13 84622323 84622603 -17250566 + MER49 LTR ERV1 1 294 -629 1591 179 65 9 chr13 84622638 84622974 -17250195 + MER4D LTR ERV1 549 903 0 307 252 101 17 chr13 84623178 84623297 -17249872 - MER117 DNA MER1_type -39 158 30 2174 119 0 0 chr13 84623570 84623873 -17249296 + AluSx SINE Alu 1 303 -9 4556 58 2 44 chr13 84623882 84624500 -17248669 + L1PA8 LINE L1 5573 6164 -8 253 394 51 0 chr13 84624623 84624760 -17248409 + L2 LINE L2 3128 3271 -1 1539 123 53 4 chr13 84625838 84626066 -17247103 - AluSx SINE Alu -73 239 1 461 293 14 47 chr13 84627051 84627266 -17245903 - MIR SINE MIR -3 259 52 307 259 35 0 chr13 84627940 84628025 -17245144 - MIR SINE MIR -58 204 117 1902 121 14 14 chr13 84629401 84629683 -17243486 + AluSq SINE Alu 5 286 -27 204 40 0 0 chr13 84629683 84629708 -17243461 + (CATA)n Simple_repeat Simple_repeat 2 26 0 2444 95 0 3 chr13 84629839 84630145 -17243024 - AluSx SINE Alu -7 305 1 261 349 55 0 chr13 84630233 84630342 -17242827 + MIR SINE MIR 31 145 -63 332 269 75 52 chr13 84630486 84630620 -17242549 - L2 LINE L2 0 3272 3136 2503 90 0 0 chr13 84630794 84631104 -17242065 - AluSg SINE Alu 0 310 1 2512 214 36 20 chr13 84632303 84632860 -17240309 + MER82 DNA MER2_type 77 642 -11 2063 92 7 52 chr13 84634176 84634482 -17238687 - AluSx SINE Alu -20 292 1 227 146 18 0 chr13 84634830 84634885 -17238284 + (CA)n Simple_repeat Simple_repeat 2 57 0 2654 26 13 3 chr13 84635033 84635338 -17237831 + AluY SINE Alu 1 308 -3 2108 98 3 29 chr13 84635349 84635655 -17237514 + AluSx SINE Alu 1 298 -14 834 176 13 0 chr13 84637006 84637165 -17236004 + L1MA10 LINE L1 6163 6323 -11 2368 85 0 13 chr13 84637707 84638012 -17235157 - AluSg1 SINE Alu -8 301 1 1743 169 7 10 chr13 84638742 84639032 -17234137 - AluJo SINE Alu -23 289 1 1215 127 0 80 chr13 84639388 84639481 -17233688 - AluJb SINE Alu -97 215 145 2223 95 0 11 chr13 84639481 84639792 -17233377 - AluSx SINE Alu 0 308 1 1215 127 0 80 chr13 84639792 84639908 -17233261 - AluJb SINE Alu -167 145 21 430 179 0 0 chr13 84640070 84640137 -17233032 + AluJb SINE Alu 118 184 -128 369 0 0 0 chr13 84640140 84640181 -17232988 + (CA)n Simple_repeat Simple_repeat 2 42 0 2281 111 0 0 chr13 84640192 84640490 -17232679 + AluSx SINE Alu 1 298 -14 892 225 88 0 chr13 84640632 84640872 -17232297 - MER58B DNA MER1_type 0 341 81 651 212 51 0 chr13 84640872 84641009 -17232160 + L1MB2 LINE L1 6021 6164 -7 2209 112 3 10 chr13 84641925 84642230 -17230939 - AluSx SINE Alu -9 303 1 378 250 65 8 chr13 84642536 84642660 -17230509 - MIR SINE MIR -102 160 30 2914 7 0 0 chr13 84643341 84643648 -17229521 + AluYa5 SINE Alu 1 307 -4 2573 194 11 13 chr13 84644263 84644728 -17228441 - Tigger7 DNA MER2_type -260 473 10 253 182 91 0 chr13 84645373 84645439 -17227730 + L1ME4a LINE L1 6023 6094 -27 2234 94 3 0 chr13 84645652 84645965 -17227204 + AluSp SINE Alu 1 314 0 1781 169 0 17 chr13 84646639 84646935 -17226234 + AluSx SINE Alu 2 292 -20 935 179 12 0 chr13 84647014 84647176 -17225993 + MSTB LTR MaLR 19 182 -244 308 276 69 11 chr13 84648943 84649030 -17224139 - MIR3 SINE MIR -29 179 88 342 0 0 0 chr13 84649038 84649076 -17224093 + (CA)n Simple_repeat Simple_repeat 2 39 0 372 230 14 34 chr13 84649588 84649736 -17223433 + (TA)n Simple_repeat Simple_repeat 1 145 0 1693 155 3 37 chr13 84649736 84650033 -17223136 - AluJb SINE Alu -25 287 1 668 159 0 61 chr13 84650251 84650383 -17222786 - FLAM_C SINE Alu -5 128 5 676 145 0 48 chr13 84650665 84650692 -17222477 - L1MA8 LINE L1 -4 6287 6260 2259 81 25 3 chr13 84650692 84650977 -17222192 + AluY SINE Alu 1 291 -20 676 145 0 48 chr13 84650977 84651073 -17222096 - L1MA8 LINE L1 -31 6260 6170 902 168 25 98 chr13 84651915 84652147 -17221022 - L1MB2 LINE L1 -29 6142 5933 2017 109 0 0 chr13 84652147 84652412 -17220757 - AluSp SINE Alu -11 302 38 902 168 25 98 chr13 84652412 84652464 -17220705 - L1MB2 LINE L1 -238 5933 5879 6945 131 34 30 chr13 84652782 84653034 -17220135 + Tigger2 DNA MER2_type 1 251 -2467 2091 133 0 13 chr13 84653034 84653335 -17219834 + AluSg SINE Alu 2 298 -12 6945 131 34 30 chr13 84653335 84653347 -17219822 + Tigger2 DNA MER2_type 251 261 -2457 2324 91 3 3 chr13 84653347 84653644 -17219525 + AluSq SINE Alu 1 297 -16 6945 131 34 30 chr13 84653644 84654562 -17218607 + Tigger2 DNA MER2_type 261 1188 -1530 1789 113 149 21 chr13 84654561 84654759 -17218410 + Tigger2 DNA MER2_type 2340 2511 -207 * 2597 105 11 3 chr13 84654759 84655120 -17218049 - THE1B LTR MaLR 0 364 1 1789 113 149 21 chr13 84655120 84655257 -17217912 + Tigger2 DNA MER2_type 2511 2718 0 354 219 42 0 chr13 84655714 84655810 -17217359 - L1MEd LINE L1 -5965 154 55 256 293 40 0 chr13 84656552 84656651 -17216518 - MER69A DNA AcHobo -55 122 20 1380 101 48 5 chr13 84659195 84659402 -17213767 - Tigger1 DNA MER2_type -1 2417 2202 929 139 6 13 chr13 84659391 84659549 -17213620 - Tigger1 DNA MER2_type -2261 157 1 * 189 0 0 0 chr13 84659807 84659828 -17213341 + (A)n Simple_repeat Simple_repeat 1 21 0 2265 115 0 13 chr13 84659844 84660157 -17213012 + AluSq SINE Alu 1 309 -4 1842 141 38 10 chr13 84660246 84660561 -17212608 + AluSx SINE Alu 1 312 0 2280 129 46 6 chr13 84660813 84661163 -17212006 + THE1B LTR MaLR 1 364 0 28 48 0 0 chr13 84662265 84662307 -17210862 + AT_rich Low_complexity Low_complexity 1 42 0 830 134 14 28 chr13 84662331 84662473 -17210696 + AluJb SINE Alu 160 299 -13 3882 158 51 32 chr13 84663531 84663586 -17209583 - L1MB2 LINE L1 0 6171 6119 2391 97 0 3 chr13 84663586 84663895 -17209274 - AluSq SINE Alu -5 308 1 3882 158 51 32 chr13 84663895 84664599 -17208570 - L1MB2 LINE L1 -52 6119 5397 2444 77 0 10 chr13 84664729 84665040 -17208129 + AluY SINE Alu 1 308 -3 1875 219 45 2 chr13 84665492 84665908 -17207261 + MLT1C LTR MaLR 24 466 -1 2133 125 16 0 chr13 84717003 84717307 -17155862 + AluSx SINE Alu 1 309 -3 1374 79 28 0 chr13 84717485 84717662 -17155507 + THE1B LTR MaLR 3 184 -180 1060 97 0 0 chr13 84717663 84717797 -17155372 + AluSg SINE Alu 1 134 -176 2224 95 10 26 chr13 84717797 84717933 -17155236 + AluSg SINE Alu 1 138 -172 2325 101 10 0 chr13 84717933 84718240 -17154929 + AluSx SINE Alu 3 312 0 2224 95 10 26 chr13 84718240 84718408 -17154761 + AluSg SINE Alu 138 300 -10 1014 149 57 29 chr13 84718412 84718587 -17154582 + THE1B LTR MaLR 183 362 -2 2201 130 32 46 chr13 84718805 84719136 -17154033 + THE1B LTR MaLR 1 328 -36 2079 104 66 0 chr13 84719136 84719423 -17153746 - AluSx SINE Alu -6 306 1 2201 130 32 46 chr13 84719423 84719460 -17153709 + THE1B LTR MaLR 328 364 0 404 202 8 53 chr13 84719533 84719782 -17153387 + AluJo SINE Alu 5 309 -3 779 153 8 8 chr13 84719940 84720071 -17153098 + FLAM_A SINE Alu 1 131 -2 2178 97 35 0 chr13 84720241 84720529 -17152640 + AluSg SINE Alu 1 298 -12 2242 102 7 0 chr13 84720593 84720888 -17152281 + AluSx SINE Alu 1 297 -15 1992 63 0 4 chr13 84721111 84721348 -17151821 - AluY SINE Alu -75 236 1 477 237 101 87 chr13 84722353 84722560 -17150609 - L1P4 LINE L1 -367 5754 5561 284 250 48 39 chr13 84722585 84722689 -17150480 - L2 LINE L2 0 3313 3209 266 303 11 85 chr13 84722839 84722954 -17150215 - MIR SINE MIR -87 175 78 2238 116 7 10 chr13 84722954 84723264 -17149905 + AluSq SINE Alu 1 309 -4 266 303 11 85 chr13 84723264 84723336 -17149833 - MIR SINE MIR -184 78 2 576 332 65 30 chr13 84723607 84723974 -17149195 + L2 LINE L2 2888 3267 -5 351 102 0 0 chr13 84723985 84724034 -17149135 + MADE1 DNA Mariner 5 53 -27 2389 96 0 6 chr13 84724054 84724367 -17148802 - AluY SINE Alu 0 311 1 395 59 0 0 chr13 84724372 84724423 -17148746 + MADE1 DNA Mariner 30 80 0 710 147 9 0 chr13 84724720 84724836 -17148333 - L1MB2 LINE L1 -4 6167 6051 22 0 0 0 chr13 84724940 84724962 -17148207 + AT_rich Low_complexity Low_complexity 1 22 0 364 119 0 45 chr13 84725029 84725096 -17148073 - AluJ/FRAM SINE Alu -8 294 231 253 162 0 0 chr13 84725068 84725105 -17148064 - AluSc SINE Alu -131 168 132 * 2100 119 20 3 chr13 84725105 84725398 -17147771 - AluSq SINE Alu -15 298 1 255 174 0 0 chr13 84725802 84725848 -17147321 - MIR SINE MIR -111 151 106 185 367 63 0 chr13 84725918 84725997 -17147172 + L2 LINE L2 3113 3196 -76 2082 134 3 0 chr13 84727062 84727353 -17145816 + AluSx SINE Alu 9 300 -12 432 248 133 75 chr13 84727848 84728126 -17145043 - MLT1K LTR MaLR -4 584 291 430 264 27 40 chr13 84728203 84728351 -17144818 - MLT1K LTR MaLR -436 152 7 1767 245 45 17 chr13 84729233 84729763 -17143406 + MLT1H1 LTR MaLR 10 554 -1 2412 88 7 0 chr13 84729961 84730258 -17142911 + AluSg SINE Alu 1 299 -11 1970 171 46 77 chr13 84730417 84730496 -17142673 + MLT1D LTR MaLR 1 81 -424 1975 102 72 41 chr13 84730496 84730859 -17142310 - THE1C LTR MaLR -1 374 1 1970 171 46 77 chr13 84730859 84731300 -17141869 + MLT1D LTR MaLR 81 505 0 1731 162 61 15 chr13 84731448 84731775 -17141394 - MSTA LTR MaLR 0 428 87 672 209 0 0 chr13 84731853 84732030 -17141139 + (TGGA)n Simple_repeat Simple_repeat 4 180 0 924 201 0 1 chr13 84732066 84732843 -17140326 + (TGGA)n Simple_repeat Simple_repeat 1 775 0 4974 158 21 30 chr13 84733762 84734542 -17138627 + L1MA9 LINE L1 5357 6128 -184 2281 102 3 0 chr13 84734542 84734837 -17138332 + AluSx SINE Alu 3 298 -14 4974 158 21 30 chr13 84734837 84735021 -17138148 + L1MA9 LINE L1 6128 6312 0 420 220 83 48 chr13 84735106 84735274 -17137895 - L1MEc LINE L1 -4396 2000 1827 675 211 8 0 chr13 84736978 84737101 -17136068 + FLAM_A SINE Alu 1 124 -9 191 262 49 0 chr13 84737512 84737573 -17135596 + MIR3 SINE MIR 120 183 -25 311 306 95 0 chr13 84737633 84737780 -17135389 - MIR SINE MIR -80 182 22 371 224 92 20 chr13 84738066 84738164 -17135005 + Charlie8 DNA MER1_type 1 105 -2312 226 177 16 16 chr13 84738955 84739017 -17134152 + (TA)n Simple_repeat Simple_repeat 1 62 0 1246 276 35 59 chr13 84739018 84739675 -17133494 + L1MEd LINE L1 927 1567 -4963 * 1398 214 76 14 chr13 84739662 84740017 -17133152 + L1ME3A LINE L1 5785 6161 -9 477 285 41 78 chr13 84740050 84740068 -17133101 + L1MEd LINE L1 1542 1559 -1342 1990 107 0 122 chr13 84740068 84740422 -17132747 + AluSp SINE Alu 1 311 -2 477 285 41 78 chr13 84740422 84740685 -17132484 + L1MEd LINE L1 1559 1860 -1041 1628 158 30 40 chr13 84740685 84740982 -17132187 + AluJo SINE Alu 3 296 -16 477 285 41 78 chr13 84740982 84741157 -17132012 + L1MEd LINE L1 1860 2040 -861 2371 156 68 14 chr13 84741296 84741738 -17131431 + MLT1C LTR MaLR 1 466 -1 234 176 0 0 chr13 84742098 84742149 -17131020 + GA-rich Low_complexity Low_complexity 1 51 0 671 185 21 91 chr13 84742259 84742477 -17130692 + MLT1E2 LTR MaLR 5 220 -285 2193 112 5 61 chr13 84742483 84742859 -17130310 - THE1A LTR MaLR 0 355 1 9508 81 25 2 chr13 84742859 84744102 -17129067 - THE1A-int LTR MaLR 0 1580 309 1040 104 13 0 chr13 84744108 84744262 -17128907 - THE1A-int LTR MaLR -1424 156 1 2087 109 66 26 chr13 84744262 84744612 -17128557 - THE1B LTR MaLR 0 364 1 643 209 0 23 chr13 84744643 84744772 -17128397 + MLT1E2 LTR MaLR 238 363 -142 2003 149 0 0 chr13 84744772 84745067 -17128102 - AluSx SINE Alu -17 295 1 902 146 7 0 chr13 84745073 84745210 -17127959 - AluJo SINE Alu -174 138 1 536 146 21 10 chr13 84745215 84745311 -17127858 + MLT1E2 LTR MaLR 527 623 -3 23 33 0 0 chr13 84745325 84745355 -17127814 + AT_rich Low_complexity Low_complexity 1 30 0 344 189 31 5 chr13 84746655 84746910 -17126259 + AluJo SINE Alu 9 302 0 2311 139 116 36 chr13 84747104 84747818 -17125351 + LTR1B LTR ERV1 1 826 0 789 209 31 42 chr13 84748151 84748342 -17124827 - MER5A DNA MER1_type 0 189 1 2355 89 3 3 chr13 84748723 84749027 -17124142 + AluSc SINE Alu 1 304 -5 23 33 0 0 chr13 84749651 84749681 -17123488 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr13 84750161 84750185 -17122984 + AT_rich Low_complexity Low_complexity 1 24 0 2261 118 0 3 chr13 84750250 84750546 -17122623 - AluSq SINE Alu -18 295 1 2295 96 7 0 chr13 84750555 84750848 -17122321 - AluSg SINE Alu -15 295 1 730 95 0 0 chr13 84750848 84750943 -17122226 - MER57B LTR ERV1 -339 95 1 7331 166 19 33 chr13 84751601 84752430 -17120739 + L1MC3 LINE L1 5446 6285 -1500 2741 142 36 5 chr13 84752430 84752845 -17120324 - MSTA LTR MaLR 0 428 1 7331 166 19 33 chr13 84752845 84753020 -17120149 + L1MC3 LINE L1 6285 6461 -1324 1844 187 0 0 chr13 84753020 84753320 -17119849 + AluJo SINE Alu 1 300 -12 7331 166 19 33 chr13 84753320 84753498 -17119671 + L1MC3 LINE L1 6461 6640 -1145 3890 149 37 61 chr13 84753498 84754204 -17118965 - LTR8 LTR ERV1 0 691 3 7331 166 19 33 chr13 84754204 84754234 -17118935 + L1MC3 LINE L1 6640 6669 -1116 1788 146 186 81 chr13 84754234 84754776 -17118393 - MER4A LTR ERV1 0 600 2 7331 166 19 33 chr13 84754776 84754954 -17118215 + L1MC3 LINE L1 6669 6819 -966 1441 145 20 22 chr13 84754963 84755269 -17117900 - MER61C LTR ERV1 -28 404 1 1402 152 30 63 chr13 84755270 84755573 -17117596 + L1MC3 LINE L1 6817 7109 -676 2079 162 8 16 chr13 84755583 84755639 -17117530 + L1MC3 LINE L1 7412 7467 -318 1141 233 97 88 chr13 84755639 84756245 -17116924 + LTR9 LTR ERV1 1 612 0 2079 162 8 16 chr13 84756245 84756559 -17116610 + L1MC3 LINE L1 7467 7779 -6 240 125 21 0 chr13 84756626 84756674 -17116495 + L1MC3 LINE L1 7731 7779 -6 21 0 0 0 chr13 84756960 84756981 -17116188 + AT_rich Low_complexity Low_complexity 1 21 0 2220 116 0 3 chr13 84757119 84757420 -17115749 + AluSc SINE Alu 1 300 -9 814 200 52 0 chr13 84757762 84757917 -17115252 + AluSg/x SINE Alu 127 289 -21 283 244 109 25 chr13 84759240 84759359 -17113810 + MIR SINE MIR 19 147 -61 860 276 106 28 chr13 84759393 84759857 -17113312 + LTR33 LTR ERVL 22 521 0 186 225 0 25 chr13 84760203 84760243 -17112926 + L3b LINE CR1 1535 1573 -10 3291 99 59 39 chr13 84760505 84761103 -17112066 + MER4B LTR ERV1 1 779 0 264 254 0 0 chr13 84761132 84761191 -17111978 - MIR SINE MIR -8 254 196 4503 181 43 5 chr13 84761387 84762183 -17110986 - LTR1B LTR ERV1 0 826 1 354 194 0 0 chr13 84762769 84762831 -17110338 - MIR SINE MIR -124 138 77 372 327 161 0 chr13 84763385 84763596 -17109573 + MIR SINE MIR 2 246 -16 372 272 133 0 chr13 84763935 84764093 -17109076 - LTR33 LTR ERVL -7 514 336 350 259 104 0 chr13 84764219 84764354 -17108815 - LTR33 LTR ERVL -334 187 39 338 194 0 11 chr13 84765022 84765115 -17108054 + (CA)n Simple_repeat Simple_repeat 1 92 0 569 196 0 0 chr13 84765560 84765662 -17107507 + U13 snRNA snRNA 1 102 -2 1031 170 211 63 chr13 84766081 84766399 -17106770 - MLT1A1 LTR MaLR 0 365 1 2072 190 92 16 chr13 84766432 84766868 -17106301 + MLT2B1 LTR ERVL 1 469 -51 551 165 9 0 chr13 84766868 84766977 -17106192 + (TAGA)n Simple_repeat Simple_repeat 3 112 0 278 108 0 0 chr13 84767000 84767037 -17106132 + MLT2D LTR ERVL 374 410 -4 256 255 133 31 chr13 84767458 84767556 -17105613 + MLT1I LTR MaLR 275 382 -27 1867 137 14 0 chr13 84767655 84768003 -17105166 + AluSx SINE Alu 1 352 0 607 195 241 39 chr13 84768090 84768347 -17104822 - MER4C LTR ERV1 0 465 157 1664 142 49 44 chr13 84768366 84768710 -17104459 - MER4A LTR ERV1 -318 346 1 650 299 118 51 chr13 84769530 84769964 -17103205 - L2 LINE L2 -1 3271 2809 2179 112 20 0 chr13 84770007 84770182 -17102987 - AluSx SINE Alu -1 311 126 216 0 0 0 chr13 84770182 84770206 -17102963 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2179 112 20 0 chr13 84770206 84770335 -17102834 - AluSx SINE Alu -186 126 1 282 290 60 20 chr13 84770712 84770812 -17102357 - MIR SINE MIR -139 123 20 184 382 0 0 chr13 84770837 84770905 -17102264 + MIR3 SINE MIR 8 75 -133 797 238 51 33 chr13 84771774 84771834 -17101335 - MIR SINE MIR -10 252 195 2313 104 0 0 chr13 84771834 84772132 -17101037 - AluSx SINE Alu -14 298 1 797 238 51 33 chr13 84772132 84772285 -17100884 - MIR SINE MIR -67 195 35 197 352 46 0 chr13 84772557 84772665 -17100504 - MIR SINE MIR 0 262 150 38 51 0 0 chr13 84772984 84773043 -17100126 + AT_rich Low_complexity Low_complexity 1 59 0 204 97 0 0 chr13 84773115 84773146 -17100023 + (CA)n Simple_repeat Simple_repeat 2 32 0 584 249 61 67 chr13 84773150 84773267 -17099902 - MIR SINE MIR 0 262 146 1800 213 52 0 chr13 84773267 84773614 -17099555 - MLT1A1 LTR MaLR 0 365 1 584 249 61 67 chr13 84773614 84773747 -17099422 - MIR SINE MIR -116 146 16 414 268 54 0 chr13 84774561 84774673 -17098496 + MIR SINE MIR 32 149 -113 664 208 0 8 chr13 84775115 84775235 -17097934 + FLAM_A SINE Alu 1 119 -14 424 214 40 6 chr13 84775235 84775408 -17097761 + (TA)n Simple_repeat Simple_repeat 2 180 0 2519 230 99 22 chr13 84775410 84776128 -17097041 + L1ME3 LINE L1 5390 6162 0 23 54 0 0 chr13 84776132 84776169 -17097000 + AT_rich Low_complexity Low_complexity 1 37 0 2055 203 17 3 chr13 84776841 84777201 -17095968 - MLT1A1 LTR MaLR 0 365 1 5247 154 7 22 chr13 84777279 84777564 -17095605 - L1M1 LINE L1 -743 5403 5115 1595 116 53 181 chr13 84777564 84777994 -17095175 - THE1C LTR MaLR 0 375 1 5247 154 7 22 chr13 84777994 84778211 -17094958 - L1M1 LINE L1 -1031 5115 4896 1955 136 3 14 chr13 84778211 84778528 -17094641 + AluSx SINE Alu 1 312 0 5247 154 7 22 chr13 84778528 84779125 -17094044 - L1M1 LINE L1 -1250 4896 4409 601 143 0 0 chr13 84779490 84779574 -17093595 - AluSg/x SINE Alu -71 239 156 1997 155 30 0 chr13 84781043 84781346 -17091823 + AluSx SINE Alu 1 312 0 1738 205 8 41 chr13 84782517 84782883 -17090286 + MLT1A1 LTR MaLR 12 365 0 331 67 0 0 chr13 84782884 84782929 -17090240 - MSTD LTR MaLR -27 369 325 371 223 65 98 chr13 84782942 84783126 -17090043 - MLT1J2 LTR MaLR -6 444 267 2227 129 0 0 chr13 84783334 84783628 -17089541 - AluSx SINE Alu -18 294 1 21 0 0 0 chr13 84783752 84783773 -17089396 + AT_rich Low_complexity Low_complexity 1 21 0 2294 106 0 0 chr13 84784529 84784822 -17088347 + AluSq SINE Alu 1 293 -20 213 220 77 66 chr13 84785320 84785411 -17087758 - MER5C DNA MER1_type 0 324 233 393 202 156 18 chr13 84785529 84785638 -17087531 - MER5C DNA MER1_type -200 124 1 425 269 60 99 chr13 84785816 84786099 -17087070 - MLT1L LTR MaLR -335 280 9 2923 153 48 106 chr13 84786439 84787131 -17086038 + L1MC3 LINE L1 7124 7775 -10 1310 163 15 0 chr13 84787131 84787333 -17085836 + AluJb SINE Alu 86 290 -22 901 133 48 6 chr13 84787378 84787544 -17085625 + L1MB3 LINE L1 6008 6180 -3 2091 136 160 8 chr13 84787711 84788079 -17085090 + MSTA LTR MaLR 1 424 -4 394 163 139 0 chr13 84788243 84788329 -17084840 + LTR33 LTR ERVL 422 519 -2 339 242 0 91 chr13 84788505 84788604 -17084565 - LTR33 LTR ERVL -431 90 1 448 303 170 32 chr13 84788733 84789103 -17084066 - MLT1L LTR MaLR 0 615 195 785 217 0 0 chr13 84789530 84789687 -17083482 - L1PA16 LINE L1 -1136 5010 4854 6094 127 8 4 chr13 84789687 84790856 -17082313 + L1PA16 LINE L1 4993 6156 -10 216 0 0 0 chr13 84792269 84792293 -17080876 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2123 136 0 0 chr13 84792315 84792623 -17080546 - AluSx SINE Alu -4 308 1 321 47 0 0 chr13 84792624 84792667 -17080502 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 602 240 157 21 chr13 84792930 84793172 -17079997 + HAL1 LINE L1 2138 2412 -95 1024 204 29 69 chr13 84793187 84793462 -17079707 - MLT1B LTR MaLR 0 390 127 847 199 287 34 chr13 84793544 84793931 -17079238 + MER31A LTR ERV1 1 485 0 1746 251 82 32 chr13 84794116 84794677 -17078492 + MLT1E LTR MaLR 5 593 0 1013 288 65 59 chr13 84795027 84795459 -17077710 - L2 LINE L2 -1 3312 2875 1354 166 27 104 chr13 84795459 84795796 -17077373 + AluJb SINE Alu 1 311 -1 1013 288 65 59 chr13 84795796 84795856 -17077313 - L2 LINE L2 -438 2875 2817 205 171 0 0 chr13 84795857 84795892 -17077277 + GA-rich Low_complexity Low_complexity 1 35 0 213 279 129 27 chr13 84795892 84796039 -17077130 - L2 LINE L2 -411 2903 2742 2624 110 3 43 chr13 84796147 84796538 -17076631 - THE1C LTR MaLR 0 375 1 275 318 151 11 chr13 84796558 84796839 -17076330 + L1MC/D LINE L1 5602 5920 -400 252 120 0 0 chr13 84796888 84796938 -17076231 + (TA)n Simple_repeat Simple_repeat 1 50 0 1300 166 30 47 chr13 84796964 84797199 -17075970 - MER46A DNA MER2_type 0 236 6 2170 107 31 0 chr13 84797206 84797496 -17075673 + AluSx SINE Alu 1 299 -13 2274 112 56 12 chr13 84797617 84797940 -17075229 - MER1B DNA MER1_type 0 337 1 828 132 0 0 chr13 84798947 84799061 -17074108 + FLAM_C SINE Alu 5 118 -25 2166 132 25 25 chr13 84799084 84799447 -17073722 + THE1C LTR MaLR 1 363 -12 362 222 111 56 chr13 84800158 84800243 -17072926 + MIR SINE MIR 11 107 -155 2792 106 3 11 chr13 84800243 84800610 -17072559 + THE1B LTR MaLR 1 364 0 362 222 111 56 chr13 84800610 84800650 -17072519 + MIR SINE MIR 107 143 -119 267 261 34 11 chr13 84800696 84800784 -17072385 + MIR SINE MIR 138 227 -35 456 224 14 91 chr13 84801024 84801053 -17072116 + MIR SINE MIR 23 53 -209 746 184 56 78 chr13 84801053 84801232 -17071937 + MER5B DNA MER1_type 4 178 0 456 224 14 91 chr13 84801232 84801345 -17071824 + MIR SINE MIR 53 154 -108 682 289 76 19 chr13 84801406 84801721 -17071448 + LTR33 LTR ERVL 175 507 -14 1834 166 14 0 chr13 84802057 84802352 -17070817 + AluJb SINE Alu 1 299 -13 2230 118 3 0 chr13 84802430 84802727 -17070442 - AluSx SINE Alu -14 298 1 750 243 11 6 chr13 84802885 84803062 -17070107 - MIR SINE MIR -18 244 67 300 197 113 0 chr13 84803282 84803353 -17069816 + L1ME LINE L1 5623 5701 -463 2057 126 17 0 chr13 84803353 84803654 -17069515 + AluSx SINE Alu 1 306 -6 261 292 149 25 chr13 84803771 84803932 -17069237 + MIR3 SINE MIR 5 169 -39 216 0 0 0 chr13 84804573 84804597 -17068572 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 811 186 41 0 chr13 84804599 84804744 -17068425 - AluJb SINE Alu -34 278 128 180 0 0 0 chr13 84805333 84805353 -17067816 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 356 331 62 8 chr13 84805806 84805936 -17067233 - MIR3 SINE MIR -30 178 42 271 276 98 24 chr13 84805964 84806087 -17067082 + L3 LINE CR1 1200 1331 -246 686 223 121 28 chr13 84806460 84806675 -17066494 + LTR50 LTR ERVL 1 235 -560 310 238 55 38 chr13 84806990 84807145 -17066024 + LTR41 LTR ERVL 621 791 -4 2217 117 0 0 chr13 84807258 84807556 -17065613 + AluSx SINE Alu 1 298 -14 1525 103 27 18 chr13 84808194 84808418 -17064751 + THE1B LTR MaLR 1 226 -138 265 288 72 8 chr13 84808886 84809011 -17064158 + L1P LINE L1 4884 5016 -1130 490 294 65 29 chr13 84809259 84809538 -17063631 + L1MCa LINE L1 1280 1568 -4858 447 323 62 22 chr13 84809851 84810077 -17063092 - MIR SINE MIR -27 235 1 1441 178 40 52 chr13 84810747 84811073 -17062096 + MER33 DNA MER1_type 1 322 -2 1261 277 38 38 chr13 84811087 84811787 -17061382 + L2 LINE L2 2617 3308 -5 476 239 74 85 chr13 84812117 84812229 -17060940 + MLT1I LTR MaLR 95 207 -202 2424 91 0 3 chr13 84812229 84812536 -17060633 + AluSc SINE Alu 1 306 -3 476 239 74 85 chr13 84812536 84812774 -17060395 + MLT1I LTR MaLR 207 409 0 1136 152 18 0 chr13 84812780 84812993 -17060176 + AluSg/x SINE Alu 117 332 0 4122 124 55 3 chr13 84813504 84814108 -17059061 + MER41B LTR ERV1 1 635 0 1675 234 44 36 chr13 84814772 84815268 -17057901 - L1ME3A LINE L1 0 6170 5671 264 59 0 0 chr13 84815268 84815302 -17057867 + (TG)n Simple_repeat Simple_repeat 2 35 0 * 333 0 0 0 chr13 84815301 84815338 -17057831 + (TA)n Simple_repeat Simple_repeat 2 38 0 2594 27 24 0 chr13 84815372 84815667 -17057502 - L1PA2 LINE L1 0 6155 5854 1917 134 3 3 chr13 84816193 84816484 -17056685 + L1MC2 LINE L1 5542 5832 -512 373 79 0 63 chr13 84816485 84816548 -17056621 + L1MB3 LINE L1 5432 5490 -693 554 125 0 0 chr13 84816548 84816620 -17056549 - AluS SINE Alu -234 78 7 1795 88 8 4 chr13 84816620 84816859 -17056310 + AluSg/x SINE Alu 70 309 -1 3551 174 60 5 chr13 84816859 84817515 -17055654 + L1MB3 LINE L1 5490 6181 -2 2220 108 0 0 chr13 84817522 84817808 -17055361 + AluSx SINE Alu 1 286 -26 216 0 0 0 chr13 84817808 84817832 -17055337 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2127 196 46 4 chr13 84817840 84818294 -17054875 + L1MC2 LINE L1 5808 6280 -64 204 125 0 0 chr13 84820784 84820816 -17052353 - MIR SINE MIR -115 147 116 2617 242 45 16 chr13 84821849 84822560 -17050609 - L1ME1 LINE L1 -5 6230 5499 1412 127 32 12 chr13 84822561 84822813 -17050356 - L1MA4 LINE L1 -5 6295 6039 6126 210 120 97 chr13 84822815 84823102 -17050067 - L1ME1 LINE L1 -1156 5059 4780 942 127 13 32 chr13 84823102 84823259 -17049910 + L1PB3 LINE L1 6000 6153 -1 6126 210 120 97 chr13 84823259 84823760 -17049409 - L1ME1 LINE L1 -1435 4780 4292 1546 191 9 46 chr13 84823760 84824084 -17049085 - AluJb SINE Alu 0 312 1 6126 210 120 97 chr13 84824084 84824244 -17048925 - L1ME1 LINE L1 -1923 4292 4137 375 147 15 0 chr13 84824244 84824312 -17048857 - L1MC1 LINE L1 -3 6330 6262 6126 210 120 97 chr13 84824312 84824670 -17048499 - L1ME1 LINE L1 -2078 4137 3789 923 55 0 0 chr13 84824670 84824780 -17048389 - L1MA2 LINE L1 0 6304 6195 6126 210 120 97 chr13 84824780 84824888 -17048281 - L1ME1 LINE L1 -2426 3789 3685 1367 174 0 0 chr13 84824888 84825100 -17048069 + AluJo SINE Alu 87 298 -14 6126 210 120 97 chr13 84825100 84825398 -17047771 - L1ME1 LINE L1 -2530 3685 3395 2057 141 3 0 chr13 84825398 84825695 -17047474 - AluSq SINE Alu -15 298 1 6126 210 120 97 chr13 84825695 84826932 -17046237 - L1ME1 LINE L1 -2820 3395 1872 220 278 28 0 chr13 84827935 84828007 -17045162 + CT-rich Low_complexity Low_complexity 1 74 0 692 234 28 117 chr13 84828024 84828306 -17044863 + MIR SINE MIR 6 262 0 464 216 122 0 chr13 84828659 84828807 -17044362 - AluJo SINE Alu -144 168 3 1324 72 84 0 chr13 84828993 84829160 -17044009 + AluSx SINE Alu 1 181 -131 1841 145 17 10 chr13 84829201 84829490 -17043679 - AluSx SINE Alu -21 291 1 245 244 49 12 chr13 84829586 84829668 -17043501 - L1M1 LINE L1 -3905 3660 3576 1853 161 10 0 chr13 84829805 84830103 -17043066 - AluJo SINE Alu -11 301 1 1872 156 0 13 chr13 84830273 84830574 -17042595 + AluJb SINE Alu 1 297 -15 2231 46 42 11 chr13 84830884 84831167 -17042002 + AluY SINE Alu 1 292 -19 846 259 101 83 chr13 84831192 84831419 -17041750 - HAL1b LINE L1 -510 838 617 2246 106 3 0 chr13 84831419 84831711 -17041458 + AluSg SINE Alu 1 293 -17 846 259 101 83 chr13 84831711 84831756 -17041413 - HAL1b LINE L1 -731 617 574 1931 147 0 0 chr13 84831756 84832042 -17041127 + AluSx SINE Alu 1 286 -26 846 259 101 83 chr13 84832042 84832371 -17040798 - HAL1b LINE L1 -774 574 225 1728 143 58 20 chr13 84832467 84832761 -17040408 - AluSx SINE Alu -7 305 1 794 235 77 15 chr13 84834362 84834879 -17038290 - L1ME3A LINE L1 -8 6162 5565 356 232 61 10 chr13 84834939 84835038 -17038131 - MLT1H LTR MaLR 0 549 446 1700 165 98 49 chr13 84835043 84835118 -17038051 - MSTC LTR MaLR -2 426 356 3212 36 3 28 chr13 84835118 84835509 -17037660 + L1PA4 LINE L1 5775 6155 0 1700 165 98 49 chr13 84835509 84835839 -17037330 - MSTC LTR MaLR -72 356 1 528 260 80 39 chr13 84835929 84836167 -17037002 - MLT1H LTR MaLR -228 302 16 1947 47 4 0 chr13 84836172 84836407 -17036762 - L1PA13 LINE L1 0 6163 5928 349 318 48 80 chr13 84836487 84836824 -17036345 - MLT1H-int LTR MaLR -17 1354 1029 2119 112 0 31 chr13 84836869 84837191 -17035978 - AluSx SINE Alu 0 312 1 201 74 0 0 chr13 84837407 84837434 -17035735 + (T)n Simple_repeat Simple_repeat 1 27 0 246 284 27 27 chr13 84837446 84837520 -17035649 - MLT1H-int LTR MaLR -509 862 789 544 92 0 23 chr13 84837815 84837902 -17035267 - L1MA4 LINE L1 0 6300 6216 1590 249 13 18 chr13 84838227 84838621 -17034548 + LTR40c LTR ERVL 74 465 0 1994 146 0 0 chr13 84839241 84839535 -17033634 + AluSx SINE Alu 12 305 -7 686 232 49 58 chr13 84839570 84839794 -17033375 + MIR SINE MIR 1 222 -40 694 157 0 0 chr13 84840026 84840134 -17033035 + MLT1C LTR MaLR 360 467 0 2490 84 0 0 chr13 84840178 84840487 -17032682 - AluSx SINE Alu -2 310 2 2479 88 0 0 chr13 84840987 84841293 -17031876 - AluSx SINE Alu -6 306 1 2693 239 75 27 chr13 84841384 84842193 -17030976 + L1MD1 LINE L1 5391 7782 -3 2529 125 65 31 chr13 84842317 84842734 -17030435 - MSTB1 LTR MaLR -1 431 1 1398 261 118 33 chr13 84842758 84843403 -17029766 - L1ME3A LINE L1 -214 5956 5257 2649 136 17 80 chr13 84843580 84843973 -17029196 + L1MB3 LINE L1 5681 6097 -86 1923 152 0 20 chr13 84843973 84844275 -17028894 + AluJb SINE Alu 1 296 -16 2649 136 17 80 chr13 84844275 84844367 -17028802 + L1MB3 LINE L1 6097 6133 -50 2038 141 0 20 chr13 84844367 84844673 -17028496 + AluSx SINE Alu 1 300 -12 2649 136 17 80 chr13 84844673 84844714 -17028455 + L1MB3 LINE L1 6133 6175 -8 1819 109 0 34 chr13 84844941 84845206 -17027963 - AluY SINE Alu -15 296 41 194 0 0 37 chr13 84845293 84845320 -17027849 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2098 120 7 3 chr13 84845387 84845686 -17027483 + AluSq SINE Alu 1 300 -13 2536 67 0 0 chr13 84846161 84846460 -17026709 - AluY SINE Alu -12 299 1 317 294 62 45 chr13 84846606 84846783 -17026386 - MARNA DNA Mariner -347 239 60 188 352 23 11 chr13 84847000 84847088 -17026081 - L2 LINE L2 -20 3293 3205 2649 52 0 0 chr13 84847113 84847422 -17025747 + L1PA7 LINE L1 5844 6152 -2 1872 172 3 0 chr13 84847654 84847957 -17025212 - AluSx SINE Alu -8 304 1 248 298 91 71 chr13 84848054 84848306 -17024863 - MIR3 SINE MIR 0 262 6 2009 155 0 3 chr13 84848577 84848880 -17024289 - AluJb SINE Alu -10 302 1 1831 182 0 3 chr13 84850648 84850950 -17022219 + AluJb SINE Alu 1 301 -11 322 273 58 39 chr13 84851338 84851492 -17021677 - MIR3 SINE MIR -18 190 34 2433 70 0 10 chr13 84851552 84851866 -17021303 + AluY SINE Alu 1 311 0 242 280 140 0 chr13 84852194 84852301 -17020868 + L2 LINE L2 3025 3146 -167 2113 107 23 17 chr13 84852898 84853198 -17019971 - AluSx SINE Alu -10 302 1 207 125 75 0 chr13 84853355 84853395 -17019774 + A-rich Low_complexity Low_complexity 4 46 0 974 114 0 63 chr13 84853562 84853720 -17019449 + AluSg/x SINE Alu 158 305 -7 264 290 218 6 chr13 84853819 84854140 -17019029 + L2 LINE L2 2104 2492 -822 356 191 101 0 chr13 84854246 84854335 -17018834 + MER69 DNA AcHobo 2429 2526 0 183 156 0 0 chr13 84854374 84854406 -17018763 + A-rich Low_complexity Low_complexity 4 35 0 2303 112 0 0 chr13 84854592 84854896 -17018273 + AluSx SINE Alu 1 304 -8 380 307 152 27 chr13 84854986 84855150 -17018019 + L2 LINE L2 2856 2998 -315 2112 104 0 20 chr13 84855150 84855448 -17017721 + AluSg SINE Alu 1 292 -18 380 307 152 27 chr13 84855448 84855690 -17017479 + L2 LINE L2 2998 3313 0 2437 191 49 45 chr13 84856188 84856246 -17016923 - L1MB7 LINE L1 0 6184 6128 2298 114 0 6 chr13 84856246 84856561 -17016608 - AluSq SINE Alu 0 313 1 2437 191 49 45 chr13 84856561 84857074 -17016095 - L1MB7 LINE L1 -56 6128 5611 962 124 0 0 chr13 84857074 84857203 -17015966 - AluSp SINE Alu -53 260 132 3102 162 44 38 chr13 84857203 84857549 -17015620 - L1MB7 LINE L1 -596 5582 5240 2168 122 0 0 chr13 84857549 84857837 -17015332 + AluSx SINE Alu 1 288 -24 3102 162 44 38 chr13 84857837 84858189 -17014980 - L1MB7 LINE L1 -938 5240 4892 2680 167 8 25 chr13 84858189 84858241 -17014928 - MLT2C2 LTR ERVL 0 464 413 2116 113 7 7 chr13 84858241 84858533 -17014636 + AluSx SINE Alu 5 296 -16 2680 167 8 25 chr13 84858533 84858952 -17014217 - MLT2C2 LTR ERVL -51 413 1 3102 162 44 38 chr13 84858952 84859075 -17014094 - L1MB7 LINE L1 -1286 4892 4771 2238 105 3 3 chr13 84859075 84859370 -17013799 - AluSc SINE Alu -14 295 1 3102 162 44 38 chr13 84859370 84859503 -17013666 - L1MB7 LINE L1 -1407 4771 4625 * 3551 69 11 0 chr13 84859496 84860138 -17013031 - L1P3 LINE L1 -615 5557 4912 2388 48 32 38 chr13 84860138 84860451 -17012718 - AluY SINE Alu 0 311 1 5199 41 7 0 chr13 84860475 84861066 -17012103 + L1PA8 LINE L1 5574 6168 -4 7637 203 78 62 chr13 84861066 84861458 -17011711 - L1MB7 LINE L1 -1507 4639 4255 306 50 0 0 chr13 84861458 84861498 -17011671 + (TG)n Simple_repeat Simple_repeat 1 40 0 7637 203 78 62 chr13 84861498 84861559 -17011610 - L1MB7 LINE L1 -1891 4255 4196 2160 87 27 17 chr13 84861559 84861857 -17011312 + AluSg SINE Alu 1 301 -9 7637 203 78 62 chr13 84861857 84862458 -17010711 - L1MB7 LINE L1 -1950 4196 3606 2106 112 11 0 chr13 84862458 84862764 -17010405 + AluSx SINE Alu 1 309 0 7637 203 78 62 chr13 84862764 84863332 -17009837 - L1MB7 LINE L1 -2540 3606 3048 234 0 0 0 chr13 84863332 84863358 -17009811 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2314 58 0 0 chr13 84863358 84863632 -17009537 - AluY SINE Alu -37 274 1 7637 203 78 62 chr13 84863632 84863659 -17009510 - L1MB7 LINE L1 -3098 3048 3023 841 207 0 43 chr13 84863659 84863823 -17009346 - FRAM SINE Alu -9 157 1 7637 203 78 62 chr13 84863823 84864390 -17008779 - L1MB7 LINE L1 -3123 3023 2466 1811 170 7 0 chr13 84864390 84864690 -17008479 - AluSx SINE Alu -10 302 1 325 109 0 0 chr13 84864694 84864740 -17008429 - AluSp SINE Alu -172 131 86 7637 203 78 62 chr13 84864740 84864810 -17008359 - L1MB7 LINE L1 -3682 2464 2258 207 0 0 0 chr13 84864855 84864878 -17008291 + (TA)n Simple_repeat Simple_repeat 1 23 0 2480 69 0 3 chr13 84864878 84865183 -17007986 - AluY SINE Alu -7 304 1 968 98 0 23 chr13 84865567 84865700 -17007469 - FLAM_C SINE Alu -13 130 1 1044 139 88 139 chr13 84865781 84866040 -17007129 - MER33 DNA MER1_type -2262 323 83 2403 64 0 7 chr13 84866040 84866338 -17006831 + AluSg SINE Alu 1 296 -14 1044 139 88 139 chr13 84866338 84866417 -17006752 - MER33 DNA MER1_type -2502 83 2 447 310 153 9 chr13 84866620 84866836 -17006333 - MIR SINE MIR 0 262 16 1023 105 0 0 chr13 84867368 84867501 -17005668 + FLAM_C SINE Alu 1 133 0 338 225 108 8 chr13 84867565 84867685 -17005484 - MIR SINE MIR -15 247 116 431 252 92 23 chr13 84868529 84868660 -17004509 - MIR SINE MIR -110 152 13 2186 101 20 16 chr13 84868737 84869043 -17004126 - AluSx SINE Alu -5 307 1 1480 173 29 4 chr13 84869489 84869801 -17003368 + AluJo SINE Alu 1 319 0 2454 69 0 10 chr13 84870008 84870311 -17002858 - AluSx SINE Alu -12 300 1 1914 104 0 67 chr13 84870890 84871187 -17001982 + AluSx SINE Alu 1 277 -35 25 0 0 0 chr13 84871910 84871935 -17001234 + GC_rich Low_complexity Low_complexity 1 25 0 207 246 0 0 chr13 84871966 84872023 -17001146 + (CCCCAA)n Simple_repeat Simple_repeat 1 57 0 28 0 0 0 chr13 84872177 84872205 -17000964 + GC_rich Low_complexity Low_complexity 1 28 0 233 244 24 32 chr13 84872219 84872342 -17000827 + (CCCCG)n Simple_repeat Simple_repeat 5 126 0 32 67 0 0 chr13 84872558 84872618 -17000551 + GC_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr13 84872768 84872789 -17000380 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr13 84873504 84873533 -16999636 + AT_rich Low_complexity Low_complexity 1 29 0 854 131 49 0 chr13 84875336 84875458 -16997711 - FLAM_C SINE Alu -15 128 1 2336 87 3 0 chr13 84876180 84876478 -16996691 + AluSg SINE Alu 1 299 -11 234 284 148 0 chr13 84876988 84877076 -16996093 + MIR SINE MIR 40 140 -68 335 109 62 0 chr13 84877391 84877455 -16995714 - L1MDa LINE L1 -3912 2628 2561 2133 106 11 0 chr13 84878520 84878803 -16994366 - AluSx SINE Alu -26 286 1 2927 0 0 0 chr13 84879598 84879907 -16993262 - AluYa5 SINE Alu -2 309 1 1723 181 31 3 chr13 84881470 84881763 -16991406 + AluJo SINE Alu 1 301 -11 2165 93 31 10 chr13 84881990 84882279 -16990890 - AluSp SINE Alu -18 295 1 1358 233 205 19 chr13 84882899 84883163 -16990006 - Charlie7 DNA MER1_type -332 2280 2066 1404 149 112 41 chr13 84883163 84883432 -16989737 - AluSx SINE Alu -24 288 1 1358 233 205 19 chr13 84883432 84883888 -16989281 - Charlie7 DNA MER1_type -546 2066 1426 2221 112 3 0 chr13 84884134 84884429 -16988740 + AluSq SINE Alu 1 296 -17 356 222 182 0 chr13 84886227 84886326 -16986843 - L2 LINE L2 -2 3311 3195 342 73 0 0 chr13 84886640 84886681 -16986488 + LTR56 LTR ERV1 348 388 -57 31 0 0 0 chr13 84886682 84886713 -16986456 + AT_rich Low_complexity Low_complexity 1 31 0 931 249 126 16 chr13 84886726 84887107 -16986062 - MER20B DNA MER1_type -1 782 360 1126 170 38 28 chr13 84887108 84887208 -16985961 - MER46A DNA MER2_type -1 235 134 291 192 216 32 chr13 84887208 84887333 -16985836 + MER46A DNA MER2_type 4 151 -85 498 233 253 55 chr13 84887338 84887630 -16985539 - MER20B DNA MER1_type -433 350 1 770 195 117 0 chr13 84888058 84888212 -16984957 + FRAM SINE Alu 1 171 -5 272 326 134 13 chr13 84889533 84889653 -16983516 + L1ME LINE L1 4055 4159 -1987 2284 97 3 10 chr13 84889653 84889961 -16983208 + AluSq SINE Alu 1 306 -7 272 326 134 13 chr13 84889961 84890064 -16983105 + L1ME LINE L1 4159 4305 -1841 1845 178 3 0 chr13 84890472 84890770 -16982399 + AluJb SINE Alu 1 299 -13 210 91 0 0 chr13 84890782 84890815 -16982354 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 1698 65 70 17 chr13 84890815 84891045 -16982124 - L1PB1 LINE L1 0 6151 5910 2252 63 3 3 chr13 84891102 84891410 -16981759 + AluY SINE Alu 1 308 0 239 250 31 31 chr13 84891602 84891698 -16981471 + L1ME LINE L1 5180 5275 -871 1607 151 147 4 chr13 84891721 84891979 -16981190 - AluJb SINE Alu -7 295 1 2173 88 35 0 chr13 84892230 84892515 -16980654 - AluY SINE Alu -11 300 6 289 229 150 16 chr13 84892585 84892712 -16980457 + L1ME LINE L1 5670 5812 -352 25 0 0 0 chr13 84893429 84893454 -16979715 + AT_rich Low_complexity Low_complexity 1 25 0 2505 57 0 0 chr13 84893606 84893903 -16979266 - AluY SINE Alu -14 297 1 180 0 0 0 chr13 84893954 84893974 -16979195 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 219 339 62 18 chr13 84894342 84894454 -16978715 - MIR SINE MIR -64 144 28 2169 122 0 0 chr13 84894489 84894785 -16978384 + AluSx SINE Alu 1 296 -16 2374 92 0 3 chr13 84895631 84895937 -16977232 + AluY SINE Alu 1 305 -6 794 187 0 0 chr13 84896678 84896801 -16976368 - FLAM_C SINE Alu -19 124 2 1936 125 42 11 chr13 84896970 84897120 -16976049 - AluSx SINE Alu -16 296 152 2004 150 0 0 chr13 84897120 84897406 -16975763 - AluSx SINE Alu -26 286 1 1936 125 42 11 chr13 84897406 84897542 -16975627 - AluSx SINE Alu -160 152 1 2425 73 0 6 chr13 84897630 84897943 -16975226 - AluY SINE Alu 0 311 1 2204 117 10 0 chr13 84899196 84899503 -16973666 + AluSq SINE Alu 1 310 -3 414 153 399 22 chr13 84899709 84899892 -16973277 - MER5C DNA MER1_type -72 252 1 1877 116 29 4 chr13 84900502 84900825 -16972344 - AluSx SINE Alu 0 330 1 1630 139 49 4 chr13 84900825 84900994 -16972175 - AluSx SINE Alu -11 301 113 396 0 0 0 chr13 84900994 84901038 -16972131 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1630 139 49 4 chr13 84901038 84901134 -16972035 - AluSx SINE Alu -199 113 23 2741 48 0 0 chr13 84901991 84902302 -16970867 - AluY SINE Alu 0 311 1 1696 133 97 25 chr13 84902495 84902774 -16970395 - AluSx SINE Alu -13 299 1 299 321 162 26 chr13 84903861 84904163 -16969006 + L2 LINE L2 1993 2335 -979 216 188 0 21 chr13 84904446 84904494 -16968675 + L2 LINE L2 3262 3308 -5 226 282 19 58 chr13 84904684 84904787 -16968382 + L2 LINE L2 3152 3250 -22 24 32 0 0 chr13 84905472 84905503 -16967666 + AT_rich Low_complexity Low_complexity 1 31 0 2030 118 38 0 chr13 84906409 84906698 -16966471 - AluSx SINE Alu -12 300 1 210 37 0 0 chr13 84906902 84906929 -16966240 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1544 140 9 4 chr13 84906932 84907161 -16966008 - AluJb SINE Alu -25 287 58 2075 107 0 0 chr13 84907161 84907433 -16965736 - AluSg SINE Alu -38 272 1 1087 164 124 69 chr13 84908297 84908572 -16964597 - AluJo SINE Alu -11 291 2 1621 116 4 84 chr13 84908694 84908969 -16964200 - AluSx SINE Alu -21 291 39 1582 140 92 0 chr13 84909921 84910171 -16962998 - AluSx SINE Alu -27 285 13 26 50 0 0 chr13 84910208 84910248 -16962921 + AT_rich Low_complexity Low_complexity 1 40 0 261 0 0 0 chr13 84910871 84910900 -16962269 + (TG)n Simple_repeat Simple_repeat 2 30 0 204 298 18 0 chr13 84910902 84910959 -16962210 + L2 LINE L2 3193 3250 -22 23 33 0 0 chr13 84912870 84912900 -16960269 + AT_rich Low_complexity Low_complexity 1 30 0 1685 87 134 8 chr13 84912951 84913227 -16959942 - AluSg SINE Alu 0 308 1 747 206 19 25 chr13 84913238 84913398 -16959771 - L1MC1 LINE L1 -19 6314 6156 964 104 0 22 chr13 84913461 84913595 -16959574 - AluSg SINE Alu -179 131 1 25 0 0 0 chr13 84913605 84913630 -16959539 + AT_rich Low_complexity Low_complexity 1 25 0 2063 90 61 0 chr13 84914600 84914879 -16958290 - AluY SINE Alu -14 297 2 747 163 0 41 chr13 84915689 84915836 -16957333 - FLAM_C SINE Alu -1 142 2 21 0 0 0 chr13 84919090 84919111 -16954058 + AT_rich Low_complexity Low_complexity 1 21 0 2366 98 0 0 chr13 84920125 84920430 -16952739 + AluSx SINE Alu 1 305 -7 518 177 63 131 chr13 84921187 84921362 -16951807 - MER58B DNA MER1_type 0 341 179 434 153 0 0 chr13 84921446 84921518 -16951651 + MIR SINE MIR 100 171 -91 2114 82 19 70 chr13 84921611 84921927 -16951242 - AluSc SINE Alu -9 300 1 296 175 111 0 chr13 84922419 84922482 -16950687 + MIR SINE MIR 159 228 -34 508 173 118 0 chr13 84922555 84922665 -16950504 - MER65A LTR ERV1 0 445 323 623 175 25 17 chr13 84922675 84922795 -16950374 - FLAM_C SINE Alu -3 140 20 1379 143 101 62 chr13 84922797 84923068 -16950101 - MER65A LTR ERV1 -123 322 36 2120 127 3 0 chr13 84923068 84923359 -16949810 - AluSx SINE Alu -20 292 1 1379 143 101 62 chr13 84923359 84923395 -16949774 - MER65A LTR ERV1 -409 36 3 1779 101 112 4 chr13 84924221 84924488 -16948681 + AluSg SINE Alu 1 296 -14 1912 165 3 0 chr13 84924500 84924797 -16948372 + AluJb SINE Alu 1 298 -14 2694 29 0 13 chr13 84925250 84925558 -16947611 + AluY SINE Alu 1 304 -7 1124 44 0 29 chr13 84925817 84925953 -16947216 + AluY SINE Alu 1 132 -179 358 108 46 0 chr13 84926211 84926276 -16946893 - MER113 DNA MER1_type? -277 244 177 990 127 0 7 chr13 84926304 84926446 -16946723 + FRAM SINE Alu 21 161 -15 309 264 72 48 chr13 84926446 84926613 -16946556 - MER113 DNA MER1_type? -345 176 6 1166 145 54 9 chr13 84926747 84926968 -16946201 - L1MB3 LINE L1 -150 6033 5803 456 231 46 8 chr13 84926969 84927099 -16946070 + LTR33A LTR ERVL 388 522 -1 2286 108 3 3 chr13 84927456 84927762 -16945407 - AluSx SINE Alu -6 306 1 219 289 78 56 chr13 84927765 84927907 -16945262 + MIR SINE MIR 46 190 -72 2507 65 0 7 chr13 84928436 84928743 -16944426 + AluY SINE Alu 1 305 -6 2102 118 0 3 chr13 84928754 84929073 -16944096 + AluSx SINE Alu 1 318 0 1676 169 10 13 chr13 84929594 84929895 -16943274 - AluJo SINE Alu -12 300 1 1812 155 10 14 chr13 84930022 84930318 -16942851 - AluJb SINE Alu -13 299 5 1643 172 25 11 chr13 84930322 84930607 -16942562 - AluJo SINE Alu -19 293 5 947 187 0 36 chr13 84931076 84931242 -16941927 + FRAM SINE Alu 1 159 -17 2309 90 0 3 chr13 84931561 84931849 -16941320 - AluSc SINE Alu -22 287 1 2183 124 0 0 chr13 84932311 84932602 -16940567 + AluSx SINE Alu 1 291 -21 1626 156 56 90 chr13 84932626 84932962 -16940207 + MLT1A1 LTR MaLR 1 347 -18 387 0 0 0 chr13 84932962 84933005 -16940164 + (TG)n Simple_repeat Simple_repeat 2 44 0 1963 114 26 26 chr13 84933005 84933312 -16939857 - AluSq SINE Alu -6 307 1 1626 156 56 90 chr13 84933312 84933352 -16939817 + MLT1A1 LTR MaLR 345 365 0 1182 156 47 97 chr13 84933744 84934014 -16939155 + MER33 DNA MER1_type 1 283 -2302 1704 113 3 122 chr13 84934014 84934343 -16938826 - AluYa8 SINE Alu -20 290 1 1182 156 47 97 chr13 84934343 84934382 -16938787 + MER33 DNA MER1_type 283 294 -2291 2263 119 0 3 chr13 84934382 84934685 -16938484 - AluSx SINE Alu -10 302 1 1182 156 47 97 chr13 84934685 84934714 -16938455 + MER33 DNA MER1_type 294 323 -1 2186 101 0 11 chr13 84935200 84935513 -16937656 + AluSx SINE Alu 1 310 0 3169 206 67 87 chr13 84935842 84935978 -16937191 - L1MD2 LINE L1 -84 6275 6138 255 31 0 0 chr13 84935978 84936010 -16937159 + (TG)n Simple_repeat Simple_repeat 2 33 0 3169 206 67 87 chr13 84936010 84936199 -16936970 - L1MD2 LINE L1 -221 6138 5947 1827 114 42 11 chr13 84936199 84936462 -16936707 + AluSx SINE Alu 12 282 -30 3169 206 67 87 chr13 84936462 84937252 -16935917 - L1MD2 LINE L1 -412 5947 5174 1194 207 28 78 chr13 84937256 84937614 -16935555 + L1M4 LINE L1 4429 4768 -1378 1550 127 0 0 chr13 84937617 84937829 -16935340 + AluSx SINE Alu 1 212 -100 368 294 80 37 chr13 84938081 84938407 -16934762 - L1MC5 LINE L1 -141 7820 7481 1541 88 36 0 chr13 84939180 84939374 -16933795 - AluSc SINE Alu -108 201 1 1864 213 42 18 chr13 84939624 84940074 -16933095 + MLT1C LTR MaLR 7 467 0 2227 103 3 3 chr13 84940140 84940440 -16932729 - AluSg SINE Alu -8 302 3 2352 102 3 10 chr13 84940442 84940755 -16932414 - AluSq SINE Alu -2 311 1 1279 233 204 19 chr13 84941001 84941458 -16931711 + Charlie7 DNA MER1_type 1426 1798 -814 1421 149 112 41 chr13 84941458 84941727 -16931442 + AluSx SINE Alu 1 288 -24 1279 233 204 19 chr13 84941727 84941991 -16931178 + Charlie7 DNA MER1_type 1798 2280 -332 2813 29 0 0 chr13 84942947 84943258 -16929911 - AluY SINE Alu 0 311 1 334 154 43 39 chr13 84943865 84943905 -16929264 - AluS SINE Alu -246 57 19 2263 81 0 3 chr13 84943905 84944189 -16928980 - AluSc SINE Alu 0 309 27 2908 10 0 0 chr13 84944189 84944496 -16928673 - AluYa5 SINE Alu -2 309 1 334 154 43 39 chr13 84944496 84944536 -16928633 - AluS SINE Alu -283 20 1 2946 130 93 26 chr13 84944610 84945148 -16928021 - MER4B LTR ERV1 -36 574 1 230 292 34 11 chr13 84945150 84945239 -16927930 - L1ME LINE L1 -5979 91 1 2429 93 0 3 chr13 84945357 84945668 -16927501 - AluSg SINE Alu 0 310 1 788 99 0 0 chr13 84945848 84945949 -16927220 + THE1B LTR MaLR 1 101 -263 749 90 0 10 chr13 84945948 84946048 -16927121 + THE1B LTR MaLR 266 364 0 * 189 253 76 25 chr13 84946402 84946481 -16926688 - MIR SINE MIR 0 262 180 2202 123 7 0 chr13 84946605 84946906 -16926263 - AluSx SINE Alu -9 303 1 21 0 0 0 chr13 84947125 84947146 -16926023 + AT_rich Low_complexity Low_complexity 1 21 0 1751 164 7 17 chr13 84947267 84947554 -16925615 + AluJb SINE Alu 1 284 -28 265 229 24 108 chr13 84947574 84947738 -16925431 - L1PA8A LINE L1 -312 5809 5659 186 352 16 0 chr13 84947944 84948072 -16925097 + L2 LINE L2 2844 2973 -299 1943 162 40 26 chr13 84948076 84948428 -16924741 + THE1B LTR MaLR 1 357 -7 2126 88 26 29 chr13 84948468 84948776 -16924393 - AluSp SINE Alu -6 307 1 273 340 55 72 chr13 84948778 84949013 -16924156 + L2 LINE L2 3040 3270 -2 1860 162 0 32 chr13 84949372 84949687 -16923482 + AluJo SINE Alu 1 305 -7 2043 122 7 17 chr13 84949727 84950023 -16923146 + AluSx SINE Alu 1 293 -19 218 321 128 28 chr13 84950039 84950257 -16922912 - MIR SINE MIR -14 248 9 451 182 11 0 chr13 84950766 84950854 -16922315 - FLAM SINE Alu -11 132 44 1840 134 31 3 chr13 84951094 84951385 -16921784 + AluSx SINE Alu 1 299 -13 592 199 110 20 chr13 84951571 84951717 -16921452 + LTR41 LTR ERVL 2 160 -613 1590 198 67 17 chr13 84951721 84952065 -16921104 + MLT1A1 LTR MaLR 1 361 -4 755 239 16 92 chr13 84952226 84952531 -16920638 + LTR41 LTR ERVL 486 767 -6 2165 105 0 0 chr13 84952585 84952861 -16920308 - AluSc SINE Alu -32 277 2 334 277 234 0 chr13 84952861 84953049 -16920120 - MIR SINE MIR -20 242 11 2227 77 0 64 chr13 84953082 84953393 -16919776 + AluY SINE Alu 1 291 -20 1487 229 16 46 chr13 84954029 84954396 -16918773 - L1M4 LINE L1 -6171 371 16 4155 95 151 146 chr13 84954409 84955789 -16917380 - pTR5 LTR ERV1 0 2438 66 1954 275 83 42 chr13 84956317 84956390 -16916779 - HAL1 LINE L1 -2 2505 2437 1463 194 21 3 chr13 84956390 84956674 -16916495 + AluJo SINE Alu 1 289 -23 186 43 0 0 chr13 84956678 84956701 -16916468 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1954 275 83 42 chr13 84956701 84957193 -16915976 - HAL1 LINE L1 -72 2435 1882 2060 132 6 3 chr13 84957193 84957504 -16915665 - AluSx SINE Alu 0 312 1 1954 275 83 42 chr13 84957504 84957819 -16915350 - HAL1 LINE L1 -625 1882 1582 237 65 0 0 chr13 84958438 84958469 -16914700 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1915 129 3 14 chr13 84958471 84958623 -16914546 - AluSq SINE Alu -29 284 135 2090 120 0 0 chr13 84958623 84958923 -16914246 - AluSx SINE Alu -12 300 1 1915 129 3 14 chr13 84958923 84959057 -16914112 - AluSq SINE Alu -178 135 1 197 254 73 0 chr13 84959489 84959544 -16913625 + MIR SINE MIR 89 147 -61 1930 137 3 26 chr13 84959834 84960147 -16913022 + AluJb SINE Alu 1 306 -6 500 203 35 183 chr13 84960589 84960743 -16912426 - MIR SINE MIR -3 259 166 2297 82 0 0 chr13 84960743 84961047 -16912122 - AluSg SINE Alu -6 304 1 500 203 35 183 chr13 84961047 84961182 -16911987 - MIR SINE MIR -96 166 13 660 123 0 0 chr13 84961185 84961299 -16911870 + (CA)n Simple_repeat Simple_repeat 1 114 0 1604 165 152 3 chr13 84961603 84961918 -16911251 + MLT1A1 LTR MaLR 4 365 0 2276 93 3 0 chr13 84962175 84962475 -16910694 - AluSx SINE Alu -11 301 1 192 268 214 18 chr13 84962849 84962961 -16910208 + MER5A DNA MER1_type 56 189 0 1927 121 7 10 chr13 84963165 84963463 -16909706 + AluSx SINE Alu 1 297 -15 513 296 55 36 chr13 84963492 84963745 -16909424 + MIR SINE MIR 5 262 0 295 309 82 18 chr13 84963777 84963887 -16909282 - MIR SINE MIR -67 141 25 1153 127 0 22 chr13 84964393 84964603 -16908566 - AluSg/x SINE Alu 0 308 103 365 212 182 0 chr13 84965697 84965796 -16907373 - L2 LINE L2 -2 3311 3195 342 73 0 0 chr13 84966110 84966151 -16907018 + LTR56 LTR ERV1 348 388 -57 31 0 0 0 chr13 84966152 84966183 -16906986 + AT_rich Low_complexity Low_complexity 1 31 0 874 247 126 16 chr13 84966196 84966577 -16906592 - MER20B DNA MER1_type -1 782 360 1110 170 38 28 chr13 84966578 84966678 -16906491 - MER46A DNA MER2_type -1 235 134 286 192 216 32 chr13 84966678 84966803 -16906366 + MER46A DNA MER2_type 4 151 -85 482 233 253 55 chr13 84966808 84967100 -16906069 - MER20B DNA MER1_type -433 350 1 202 125 42 0 chr13 84968105 84968153 -16905016 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 180 331 73 88 chr13 84968961 84969097 -16904072 - L2 LINE L2 -16 3256 3123 264 353 35 0 chr13 84969353 84969469 -16903700 + L2 LINE L2 2915 3034 -238 2077 121 0 0 chr13 84969470 84969768 -16903401 + AluSq SINE Alu 1 298 -15 439 189 0 57 chr13 84969957 84970063 -16903106 + AluJb SINE Alu 209 308 -4 1047 96 19 13 chr13 84970063 84970219 -16902950 + AluSg/x SINE Alu 119 275 -35 1830 130 4 14 chr13 84970320 84970462 -16902707 - AluSq SINE Alu -39 274 135 2090 120 0 0 chr13 84970462 84970762 -16902407 - AluSx SINE Alu -12 300 1 1830 130 4 14 chr13 84970762 84970896 -16902273 - AluSq SINE Alu -178 135 1 197 254 73 0 chr13 84971328 84971383 -16901786 + MIR SINE MIR 89 147 -61 1930 137 3 26 chr13 84971673 84971986 -16901183 + AluJb SINE Alu 1 306 -6 500 203 35 183 chr13 84972428 84972582 -16900587 - MIR SINE MIR -3 259 166 2297 82 0 0 chr13 84972582 84972886 -16900283 - AluSg SINE Alu -6 304 1 500 203 35 183 chr13 84972886 84973021 -16900148 - MIR SINE MIR -96 166 13 660 123 0 0 chr13 84973024 84973138 -16900031 + (CA)n Simple_repeat Simple_repeat 1 114 0 1604 165 152 3 chr13 84973442 84973757 -16899412 + MLT1A1 LTR MaLR 4 365 0 2276 93 3 0 chr13 84974014 84974314 -16898855 - AluSx SINE Alu -11 301 1 330 242 57 105 chr13 84974637 84974761 -16898408 - MER5A DNA MER1_type -6 183 66 199 250 223 27 chr13 84974688 84974800 -16898369 + MER5A DNA MER1_type 56 189 0 * 1927 121 7 10 chr13 84975004 84975302 -16897867 + AluSx SINE Alu 1 297 -15 513 296 55 36 chr13 84975331 84975584 -16897585 + MIR SINE MIR 5 262 0 295 309 82 18 chr13 84975616 84975726 -16897443 - MIR SINE MIR -67 141 25 1825 133 0 14 chr13 84976232 84976546 -16896623 - AluSx SINE Alu 0 310 1 971 73 0 8 chr13 84976679 84976803 -16896366 + AluSg SINE Alu 1 123 -187 472 238 147 73 chr13 84977428 84977672 -16895497 + L3 LINE CR1 816 1041 -536 249 108 0 0 chr13 84977672 84977709 -16895460 + (TA)n Simple_repeat Simple_repeat 1 37 0 2337 69 0 0 chr13 84977709 84977998 -16895171 - AluY SINE Alu -22 289 1 472 238 147 73 chr13 84977998 84978025 -16895144 + L3 LINE CR1 1040 1108 -469 515 308 76 69 chr13 84978051 84978512 -16894657 + LTR16B LTR ERVL 1 464 0 327 280 129 30 chr13 84978620 84978752 -16894417 + MIR3 SINE MIR 16 160 -48 1621 140 4 19 chr13 84978783 84979047 -16894122 - AluSx SINE Alu -52 260 1 345 324 129 0 chr13 84979256 84979426 -16893743 + L3 LINE CR1 1248 1439 -138 1035 201 46 14 chr13 84979426 84979645 -16893524 - MLT1B LTR MaLR 0 390 165 40 21 0 0 chr13 84979645 84979692 -16893477 + AT_rich Low_complexity Low_complexity 1 47 0 222 37 0 0 chr13 84979692 84979719 -16893450 + (GA)n Simple_repeat Simple_repeat 2 28 0 666 202 0 0 chr13 84979721 84979830 -16893339 - FLAM_C SINE Alu -33 110 2 1059 155 17 0 chr13 84979831 84980005 -16893164 - MLT1B LTR MaLR -213 177 1 654 234 5 64 chr13 84980119 84980307 -16892862 - LTR16C LTR ERVL 0 491 315 324 0 0 0 chr13 84980994 84981030 -16892139 + (TG)n Simple_repeat Simple_repeat 2 37 0 504 225 52 29 chr13 84981744 84981917 -16891252 + L1ME3 LINE L1 5770 5946 -216 502 149 11 0 chr13 84982373 84982460 -16890709 + AluSg/x SINE Alu 218 305 -5 535 225 2 11 chr13 84982854 84982992 -16890177 - MLT1D LTR MaLR -4 501 250 641 181 199 56 chr13 84983043 84983105 -16890064 - MLT1D LTR MaLR -257 248 196 2271 47 18 0 chr13 84983105 84983382 -16889787 - AluY SINE Alu -7 304 23 641 181 199 56 chr13 84983382 84983535 -16889634 - MLT1D LTR MaLR -309 196 2 1595 255 88 71 chr13 84983592 84983796 -16889373 - L2 LINE L2 0 3313 3114 1746 154 14 0 chr13 84983796 84984082 -16889087 + AluJo SINE Alu 11 300 -12 1595 255 88 71 chr13 84984082 84984852 -16888317 - L2 LINE L2 -199 3114 2308 2641 102 16 5 chr13 84984852 84985223 -16887946 - THE1C LTR MaLR 0 375 1 1595 255 88 71 chr13 84985223 84985300 -16887869 - L2 LINE L2 -1005 2308 2234 1734 154 12 111 chr13 84985304 84985619 -16887550 + MLT1A2 LTR MaLR 1 267 -107 2192 143 55 24 chr13 84985619 84986038 -16887131 - MSTB1 LTR MaLR 0 432 1 1734 154 12 111 chr13 84986038 84986137 -16887032 + MLT1A2 LTR MaLR 267 374 0 414 256 108 8 chr13 84986137 84986266 -16886903 - L2 LINE L2 -1080 2234 2093 2344 138 13 13 chr13 84986440 84986830 -16886339 - MLT1B LTR MaLR 0 390 1 1584 177 35 0 chr13 84987304 84987592 -16885577 - AluJb SINE Alu -14 298 1 196 246 88 0 chr13 84987618 84987675 -16885494 + MIR SINE MIR 91 152 -110 314 284 65 52 chr13 84988438 84988593 -16884576 + MIR SINE MIR 64 220 -42 2100 114 0 7 chr13 84988604 84988911 -16884258 + AluSx SINE Alu 1 305 -7 1324 41 24 18 chr13 84988921 84989090 -16884079 + AluY SINE Alu 1 170 -141 2232 121 21 3 chr13 84989361 84989691 -16883478 - MER1B DNA MER1_type 0 337 2 2449 68 0 0 chr13 84990022 84990333 -16882836 + AluY SINE Alu 1 311 0 1107 110 0 12 chr13 84990827 84991036 -16882133 - AluSg/x SINE Alu 0 312 136 2308 106 0 0 chr13 84991044 84991356 -16881813 - AluSx SINE Alu 0 312 1 207 0 0 0 chr13 84991374 84991397 -16881772 + (A)n Simple_repeat Simple_repeat 1 23 0 2417 66 0 0 chr13 84991563 84991868 -16881301 + AluY SINE Alu 1 305 -6 193 264 0 83 chr13 84992274 84992346 -16880823 + MIR SINE MIR 7 72 -190 1798 104 65 21 chr13 84992378 84992657 -16880512 - AluSx SINE Alu -15 297 7 549 0 0 0 chr13 84992901 84992962 -16880207 + (TG)n Simple_repeat Simple_repeat 1 61 0 360 0 0 0 chr13 84994653 84994693 -16878476 + (CA)n Simple_repeat Simple_repeat 1 40 0 2207 87 0 3 chr13 84995178 84995467 -16877702 + AluY SINE Alu 1 288 -23 534 286 77 77 chr13 84995470 84995914 -16877255 + HAL1b LINE L1 100 546 -802 1439 184 58 11 chr13 84995914 84996192 -16876977 - AluJo SINE Alu -21 291 1 534 286 77 77 chr13 84996192 84996295 -16876874 + HAL1b LINE L1 545 647 -701 249 271 54 31 chr13 84996361 84996490 -16876679 + HAL1b LINE L1 746 877 -471 2607 210 40 80 chr13 84996521 84996679 -16876490 + L1MB7 LINE L1 5357 5520 -664 783 102 0 274 chr13 84996679 84996945 -16876224 + 7SK RNA RNA 1 193 0 2607 210 40 80 chr13 84996945 84997635 -16875534 + L1MB7 LINE L1 5520 6171 -13 1726 189 0 0 chr13 84997851 84998152 -16875017 + AluJo SINE Alu 1 301 -11 23 33 0 0 chr13 84999084 84999114 -16874055 + AT_rich Low_complexity Low_complexity 1 30 0 1402 180 7 27 chr13 84999415 84999710 -16873459 - AluJo SINE Alu -23 289 1 1106 108 83 15 chr13 84999767 84999971 -16873198 + L1MA4 LINE L1 6083 6300 0 477 223 114 34 chr13 85000361 85000536 -16872633 + MER5A DNA MER1_type 1 189 0 192 167 48 0 chr13 85001387 85001429 -16871740 - L2 LINE L2 -7 3265 3222 528 185 11 0 chr13 85001842 85001934 -16871235 - FRAM SINE Alu -79 97 5 467 59 0 138 chr13 85001944 85002147 -16871022 + (AGGGGG)n Simple_repeat Simple_repeat 2 176 0 243 257 0 0 chr13 85002154 85002255 -16870914 + G-rich Low_complexity Low_complexity 4 104 0 716 130 0 0 chr13 85002275 85002375 -16870794 - AluSg/x SINE Alu -28 284 185 2147 47 4 14 chr13 85002476 85002754 -16870415 + AluY SINE Alu 18 292 -19 2386 58 3 0 chr13 85002918 85003211 -16869958 - AluSp SINE Alu -19 294 1 235 352 109 16 chr13 85003716 85003844 -16869325 + MIR3 SINE MIR 4 143 -65 1018 236 37 0 chr13 85003874 85004116 -16869053 - MIR SINE MIR -5 257 7 1679 171 7 4 chr13 85004371 85004651 -16868518 - AluJo SINE Alu -31 281 1 875 64 112 8 chr13 85005816 85005941 -16867228 + MER85 DNA T2_type 1 138 -1 2303 103 6 6 chr13 85005979 85006291 -16866878 + AluSq SINE Alu 1 312 -1 21 0 0 0 chr13 85006306 85006327 -16866842 + AT_rich Low_complexity Low_complexity 1 21 0 545 342 48 4 chr13 85006521 85006793 -16866376 + L3 LINE CR1 297 580 -997 2436 91 0 0 chr13 85007040 85007338 -16865831 + AluSg SINE Alu 1 298 -12 2134 125 0 3 chr13 85007705 85008000 -16865169 + AluSx SINE Alu 1 294 -18 2207 110 0 0 chr13 85008420 85008735 -16864434 - AluSx SINE Alu 0 315 1 1430 162 88 29 chr13 85009549 85009821 -16863348 + AluJo SINE Alu 1 288 -24 21 0 0 0 chr13 85010487 85010508 -16862661 + AT_rich Low_complexity Low_complexity 1 21 0 2371 73 0 29 chr13 85011811 85012124 -16861045 - AluSg SINE Alu -6 304 1 2412 185 85 34 chr13 85013234 85013377 -16859792 + L1MB3 LINE L1 5565 5699 -484 2416 107 0 0 chr13 85013377 85013686 -16859483 - AluSx SINE Alu -3 309 1 2412 185 85 34 chr13 85013686 85013989 -16859180 + L1MB3 LINE L1 5699 5985 -198 2466 80 0 16 chr13 85013989 85014301 -16858868 + AluSp SINE Alu 2 308 -5 2412 185 85 34 chr13 85014301 85014398 -16858771 + L1MB3 LINE L1 5985 6076 -107 2420 90 0 0 chr13 85014398 85014699 -16858470 + AluSx SINE Alu 1 301 -11 2412 185 85 34 chr13 85014699 85014742 -16858427 + L1MB3 LINE L1 6076 6183 0 1627 211 52 29 chr13 85015092 85015500 -16857669 - MER63B DNA MER1_type 0 436 20 2185 101 20 3 chr13 85015983 85016281 -16856888 + AluSq SINE Alu 1 303 -10 428 207 155 7 chr13 85016792 85016920 -16856249 - MER45A DNA AcHobo -31 147 1 1236 274 99 68 chr13 85017177 85017781 -16855388 + HAL1b LINE L1 14 667 -681 1934 139 0 4 chr13 85017781 85018062 -16855107 + AluJb SINE Alu 14 293 -19 1236 274 99 68 chr13 85018062 85018552 -16854617 + HAL1b LINE L1 667 1141 -207 725 196 43 37 chr13 85018578 85018741 -16854428 + AluJo SINE Alu 119 282 -30 414 0 0 0 chr13 85018751 85018797 -16854372 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 292 169 90 22 chr13 85018799 85018888 -16854281 + HAL1b LINE L1 1246 1340 -8 211 329 0 12 chr13 85019033 85019115 -16854054 - MIR SINE MIR -113 149 69 329 261 91 67 chr13 85019247 85019412 -16853757 + L1ME4a LINE L1 5512 5680 -441 274 315 31 0 chr13 85019431 85019558 -16853611 + L1ME4a LINE L1 5732 5862 -259 980 282 80 80 chr13 85019588 85019927 -16853242 + HAL1 LINE L1 10 348 -2159 2091 162 91 15 chr13 85019927 85020323 -16852846 + MSTB LTR MaLR 1 426 0 980 282 80 80 chr13 85020323 85020512 -16852657 + HAL1 LINE L1 348 536 -1971 2090 79 40 14 chr13 85020512 85020813 -16852356 - AluY SINE Alu 0 308 1 980 282 80 80 chr13 85020813 85020976 -16852193 + HAL1 LINE L1 536 698 -1809 1915 159 47 39 chr13 85020976 85021335 -16851834 + THE1B LTR MaLR 1 362 -2 980 282 80 80 chr13 85021335 85021543 -16851626 + HAL1 LINE L1 697 912 -1595 244 179 75 0 chr13 85021713 85021780 -16851389 + HAL1 LINE L1 2245 2316 -191 2365 102 0 6 chr13 85021900 85022213 -16850956 + AluSx SINE Alu 1 311 -1 307 221 74 11 chr13 85022398 85022493 -16850676 + L1ME4a LINE L1 5973 6073 -48 2157 129 0 6 chr13 85022720 85023031 -16850138 - AluSx SINE Alu -3 309 1 2552 165 36 61 chr13 85024303 85024862 -16848307 + L1MB2 LINE L1 5622 6166 -5 766 189 179 9 chr13 85025458 85025670 -16847499 + MIR SINE MIR 14 261 -1 259 206 44 0 chr13 85026274 85026342 -16846827 - L1ME4a LINE L1 -118 6003 5933 795 271 120 56 chr13 85029232 85029604 -16843565 + HAL1 LINE L1 539 886 -1621 2227 113 0 13 chr13 85029604 85029740 -16843429 + AluSx SINE Alu 1 137 -175 2327 105 0 0 chr13 85029740 85030045 -16843124 + AluY SINE Alu 1 305 -6 2227 113 0 13 chr13 85030045 85030208 -16842961 + AluSx SINE Alu 137 296 -16 795 271 120 56 chr13 85030208 85030495 -16842674 + HAL1 LINE L1 886 1240 -1267 874 255 127 82 chr13 85030648 85030837 -16842332 + HAL1 LINE L1 1433 1612 -895 708 191 0 0 chr13 85030837 85030952 -16842217 - FLAM_A SINE Alu -18 115 1 874 255 127 82 chr13 85030952 85031469 -16841700 + HAL1 LINE L1 1612 2171 -336 579 239 115 51 chr13 85031786 85032117 -16841052 + HAL1 LINE L1 1755 2106 -401 2635 64 0 0 chr13 85032194 85032505 -16840664 - AluY SINE Alu 0 311 1 2181 123 0 13 chr13 85032686 85032996 -16840173 + AluSx SINE Alu 1 306 -6 310 263 28 108 chr13 85033168 85033369 -16839800 + L1MC1 LINE L1 5259 5438 -2370 1782 179 0 13 chr13 85033369 85033682 -16839487 + AluJb SINE Alu 1 309 -3 310 263 28 108 chr13 85033682 85033731 -16839438 + L1MC1 LINE L1 5438 5489 -2319 920 225 44 13 chr13 85033762 85033989 -16839180 + MIR SINE MIR 8 241 -21 452 291 169 26 chr13 85034036 85034349 -16838820 + L1MC1 LINE L1 5566 5923 -1885 2207 108 26 7 chr13 85034377 85034683 -16838486 + AluSx SINE Alu 1 312 0 2238 131 0 0 chr13 85035158 85035464 -16837705 - AluSx SINE Alu -6 306 1 1093 89 0 0 chr13 85035464 85035599 -16837570 - AluSq/x SINE Alu -177 135 1 2558 67 0 0 chr13 85036388 85036688 -16836481 + AluSq SINE Alu 1 300 -13 710 130 0 0 chr13 85036754 85036854 -16836315 + AluSg/x SINE Alu 195 294 -18 4165 124 39 0 chr13 85036935 85037571 -16835598 - L1PA14 LINE L1 -4 6157 5497 222 321 12 0 chr13 85037904 85037988 -16835181 - L2 LINE L2 -5 3308 3224 1548 198 16 10 chr13 85038319 85038622 -16834547 + AluJo SINE Alu 1 305 -7 183 204 0 0 chr13 85038622 85038666 -16834503 + GA-rich Low_complexity Low_complexity 1 44 0 2400 90 0 3 chr13 85038881 85039181 -16833988 + AluSq SINE Alu 2 300 -13 459 175 140 9 chr13 85039286 85039400 -16833769 + L1MC1 LINE L1 6205 6333 0 2082 93 6 65 chr13 85039419 85039740 -16833429 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr13 85039923 85039944 -16833225 + AT_rich Low_complexity Low_complexity 1 21 0 704 181 81 6 chr13 85040511 85040626 -16832543 + MER96B DNA MER1_type? 8 140 -277 2312 108 3 6 chr13 85040626 85040940 -16832229 + AluSp SINE Alu 1 313 0 704 181 81 6 chr13 85040940 85040984 -16832185 + MER96B DNA MER1_type? 140 179 -238 283 247 233 27 chr13 85041061 85041207 -16831962 + MIR SINE MIR 60 235 -27 333 214 29 0 chr13 85042554 85042624 -16830545 - L2 LINE L2 -15 3298 3227 440 216 27 9 chr13 85042653 85042764 -16830405 + MIR SINE MIR 41 153 -109 885 130 30 0 chr13 85043537 85043668 -16829501 + AluJo SINE Alu 1 135 -177 1429 205 40 4 chr13 85043697 85043975 -16829194 + AluJo SINE Alu 1 288 -24 222 280 93 37 chr13 85044296 85044403 -16828766 - MIR SINE MIR -102 160 48 830 227 50 62 chr13 85044417 85044577 -16828592 + MLT1F LTR MaLR 1 161 -381 1864 150 13 19 chr13 85044577 85044890 -16828279 + AluJb SINE Alu 1 311 -1 830 227 50 62 chr13 85044890 85045028 -16828141 + MLT1F LTR MaLR 161 299 -243 2375 82 13 0 chr13 85045028 85045331 -16827838 - AluSp SINE Alu -6 307 1 830 227 50 62 chr13 85045331 85045352 -16827817 + MLT1F LTR MaLR 299 319 -223 700 168 35 0 chr13 85045352 85045465 -16827704 - FLAM_A SINE Alu -16 117 1 830 227 50 62 chr13 85045465 85045623 -16827546 + MLT1F LTR MaLR 319 534 -8 1541 218 106 15 chr13 85046012 85046528 -16826641 + L1ME1 LINE L1 5423 6103 -63 245 312 37 0 chr13 85046443 85046533 -16826636 + L1MA10 LINE L1 6174 6270 -64 * 2051 126 7 0 chr13 85046533 85046818 -16826351 + AluSq SINE Alu 1 287 -26 245 312 37 0 chr13 85046818 85046836 -16826333 + L1MA10 LINE L1 6270 6286 -48 524 119 63 0 chr13 85046838 85046997 -16826172 + (TA)n Simple_repeat Simple_repeat 2 170 0 337 98 71 0 chr13 85047010 85047122 -16826047 + (TA)n Simple_repeat Simple_repeat 1 120 0 253 237 161 84 chr13 85047707 85047956 -16825213 - MLT1L LTR MaLR 0 615 348 341 283 53 0 chr13 85048150 85048263 -16824906 + MLT1L LTR MaLR 363 481 -134 2494 86 0 0 chr13 85048434 85048735 -16824434 + AluSx SINE Alu 1 301 -11 1272 178 74 4 chr13 85049016 85049274 -16823895 - Tigger7 DNA MER2_type -3 2584 2309 628 208 192 0 chr13 85049278 85049408 -16823761 - Tigger7 DNA MER2_type -562 171 17 464 221 64 7 chr13 85049836 85049976 -16823193 + L1ME2 LINE L1 5157 5304 -842 282 150 17 0 chr13 85049973 85050033 -16823136 + L1MA10 LINE L1 6274 6334 0 * 2127 106 28 3 chr13 85050066 85050349 -16822820 + AluSx SINE Alu 2 291 -21 2606 62 0 0 chr13 85050359 85050666 -16822503 + AluY SINE Alu 1 307 -4 1475 217 154 7 chr13 85050676 85051105 -16822064 + L1ME2 LINE L1 5338 5829 -335 253 241 36 12 chr13 85051109 85051192 -16821977 + GA-rich Low_complexity Low_complexity 3 87 0 265 185 151 5 chr13 85051192 85051208 -16821961 + L1MCa LINE L1 1408 1420 -5187 1925 163 0 6 chr13 85051208 85051521 -16821648 + AluJb SINE Alu 1 311 -1 265 185 151 5 chr13 85051521 85051586 -16821583 + L1MCa LINE L1 1420 1684 -4923 2354 87 3 0 chr13 85051995 85052294 -16820875 - AluSp SINE Alu -8 305 6 957 139 33 67 chr13 85052514 85052694 -16820475 + AluJo SINE Alu 84 257 -55 2274 99 3 0 chr13 85053868 85054161 -16819008 + AluSp SINE Alu 1 294 -19 2186 110 30 0 chr13 85054508 85054808 -16818361 - AluSx SINE Alu -3 309 1 225 0 0 0 chr13 85056169 85056194 -16816975 + (CA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr13 85056306 85056331 -16816838 + AT_rich Low_complexity Low_complexity 1 25 0 32 43 0 0 chr13 85056833 85056879 -16816290 + GC_rich Low_complexity Low_complexity 1 46 0 26 30 0 0 chr13 85056971 85057004 -16816165 + GC_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 85057012 85057041 -16816128 + GC_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr13 85057209 85057278 -16815891 + GC_rich Low_complexity Low_complexity 1 69 0 23 54 0 0 chr13 85057329 85057366 -16815803 + GC_rich Low_complexity Low_complexity 1 37 0 212 83 0 28 chr13 85057421 85057457 -16815712 + (CCCCG)n Simple_repeat Simple_repeat 4 38 0 437 198 36 36 chr13 85058556 85058667 -16814502 + MER5A DNA MER1_type 3 113 -76 * 875 198 54 0 chr13 85058658 85058825 -16814344 - MER5A DNA MER1_type -11 178 3 489 186 236 0 chr13 85058835 85058975 -16814194 + MER5B DNA MER1_type 1 173 -5 425 208 352 0 chr13 85058991 85059116 -16814053 - MER5A DNA MER1_type -6 183 15 2248 95 0 16 chr13 85059165 85059482 -16813687 + AluSx SINE Alu 1 312 0 201 282 0 70 chr13 85059841 85059912 -16813257 + MIR3 SINE MIR 134 199 -9 2294 77 0 0 chr13 85059959 85060256 -16812913 + AluY SINE Alu 1 297 -14 812 176 0 7 chr13 85060256 85060398 -16812771 - FRAM SINE Alu -35 141 1 1131 220 181 52 chr13 85061061 85061166 -16812003 + MLT1F1 LTR MaLR 63 153 -414 2384 62 0 0 chr13 85061166 85061457 -16811712 - AluSg1 SINE Alu -18 291 1 1131 220 181 52 chr13 85061457 85061792 -16811377 + MLT1F1 LTR MaLR 153 560 -7 231 225 14 42 chr13 85062156 85062227 -16810942 - L1MC/D LINE L1 -2176 5632 5564 1590 236 120 46 chr13 85062253 85062795 -16810374 + MLT1G LTR MaLR 1 582 -8 2172 109 0 0 chr13 85062869 85063171 -16809998 - AluSg SINE Alu -6 304 3 468 282 144 34 chr13 85063252 85063610 -16809559 - L1MC/D LINE L1 -807 5339 4937 255 279 63 40 chr13 85063708 85063930 -16809239 - L1MC/D LINE L1 -1331 4815 4589 774 106 0 0 chr13 85063959 85064063 -16809106 + AluSg/x SINE Alu 192 295 -15 652 230 54 14 chr13 85064104 85064252 -16808917 - MIR SINE MIR -108 154 1 2238 90 0 3 chr13 85064581 85064880 -16808289 + AluSx SINE Alu 1 298 -14 2488 150 66 66 chr13 85065009 85065472 -16807697 + L1MB7 LINE L1 5628 6093 -91 2002 112 14 0 chr13 85065472 85065758 -16807411 - AluSx SINE Alu -17 295 6 2488 150 66 66 chr13 85065758 85065842 -16807327 + L1MB7 LINE L1 6092 6175 -9 780 219 6 33 chr13 85066304 85066487 -16806682 - MER5B DNA MER1_type 0 178 1 1122 260 55 43 chr13 85066973 85067389 -16805780 - L1MC4a LINE L1 -1952 5856 5436 1927 100 0 82 chr13 85067389 85067718 -16805451 + AluSg1 SINE Alu 1 302 -7 1440 95 0 33 chr13 85067722 85067933 -16805236 + AluSg/x SINE Alu 89 292 -20 2429 77 3 0 chr13 85068518 85068829 -16804340 - AluSp SINE Alu -1 312 1 2647 138 5 12 chr13 85070794 85071206 -16801963 - Tigger3b DNA MER2_type 0 1231 823 2012 113 21 82 chr13 85071205 85071266 -16801903 - THE1B LTR MaLR -8 356 293 * 2116 92 20 0 chr13 85071266 85071561 -16801608 - AluSg SINE Alu -9 301 1 2012 113 21 82 chr13 85071561 85071878 -16801291 - THE1B LTR MaLR -71 293 1 4524 126 40 39 chr13 85071878 85071919 -16801250 - Tigger3b DNA MER2_type -2203 825 786 1925 160 53 8 chr13 85071919 85072275 -16800894 - THE1C LTR MaLR 0 375 4 4524 126 40 39 chr13 85072275 85072302 -16800867 - Tigger3b DNA MER2_type -2242 786 761 2073 96 25 0 chr13 85072302 85072584 -16800585 + AluSg SINE Alu 1 289 -21 4524 126 40 39 chr13 85072584 85073126 -16800043 - Tigger3b DNA MER2_type -2267 761 210 2409 61 0 0 chr13 85073126 85073422 -16799747 - AluY SINE Alu -15 296 1 4524 126 40 39 chr13 85073422 85073633 -16799536 - Tigger3b DNA MER2_type -2818 210 1 180 0 0 0 chr13 85073669 85073689 -16799480 + (A)n Simple_repeat Simple_repeat 1 20 0 1813 126 0 58 chr13 85073709 85074019 -16799150 + AluJb SINE Alu 11 302 -10 553 215 2 11 chr13 85074418 85074556 -16798613 - MLT1D LTR MaLR -4 501 250 629 176 199 56 chr13 85074607 85074669 -16798500 - MLT1D LTR MaLR -257 248 196 2279 47 18 0 chr13 85074669 85074947 -16798222 - AluY SINE Alu -6 305 23 629 176 199 56 chr13 85074947 85075100 -16798069 - MLT1D LTR MaLR -309 196 2 1588 256 88 71 chr13 85075157 85075361 -16797808 - L2 LINE L2 0 3313 3114 1746 154 14 0 chr13 85075361 85075647 -16797522 + AluJo SINE Alu 11 300 -12 1588 256 88 71 chr13 85075647 85076417 -16796752 - L2 LINE L2 -199 3114 2308 2641 102 16 5 chr13 85076417 85076788 -16796381 - THE1C LTR MaLR 0 375 1 1588 256 88 71 chr13 85076788 85076865 -16796304 - L2 LINE L2 -1005 2308 2234 1743 152 17 116 chr13 85076869 85077184 -16795985 + MLT1A2 LTR MaLR 1 267 -107 2192 143 55 24 chr13 85077184 85077603 -16795566 - MSTB1 LTR MaLR 0 432 1 1743 152 17 116 chr13 85077603 85077702 -16795467 + MLT1A2 LTR MaLR 267 374 0 414 256 108 8 chr13 85077702 85077831 -16795338 - L2 LINE L2 -1080 2234 2093 2344 138 13 13 chr13 85078005 85078395 -16794774 - MLT1B LTR MaLR 0 390 1 1584 177 35 0 chr13 85078869 85079157 -16794012 - AluJb SINE Alu -14 298 1 196 246 88 0 chr13 85079183 85079240 -16793929 + MIR SINE MIR 91 152 -110 314 284 65 52 chr13 85080004 85080159 -16793010 + MIR SINE MIR 64 220 -42 2100 114 0 7 chr13 85080170 85080477 -16792692 + AluSx SINE Alu 1 305 -7 2281 59 13 16 chr13 85080487 85080793 -16792376 + AluY SINE Alu 1 305 -6 846 126 0 0 chr13 85080810 85080929 -16792240 - AluSq/x SINE Alu -179 133 15 330 26 0 0 chr13 85081313 85081352 -16791817 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1801 133 0 0 chr13 85081362 85081632 -16791537 - AluSx SINE Alu -41 271 2 4317 172 10 35 chr13 85081649 85081820 -16791349 + LTR39 LTR ERV1 1 175 -608 2047 93 31 0 chr13 85081820 85082109 -16791060 + AluY SINE Alu 1 298 -13 4317 172 10 35 chr13 85082109 85082740 -16790429 + LTR39 LTR ERV1 175 783 0 2271 92 0 3 chr13 85082811 85083114 -16790055 + AluSq SINE Alu 1 302 -11 1290 86 11 0 chr13 85083114 85083289 -16789880 + AluSg/x SINE Alu 132 308 -2 2135 100 3 3 chr13 85083291 85083591 -16789578 + AluSg SINE Alu 3 302 -8 1883 213 42 18 chr13 85083657 85084107 -16789062 - MLT1C LTR MaLR 0 467 7 1453 88 36 0 chr13 85084357 85084551 -16788618 + AluSc SINE Alu 1 201 -108 219 290 60 10 chr13 85084800 85084900 -16788269 - MIR SINE MIR -65 143 39 241 263 82 60 chr13 85085323 85085648 -16787521 + L1MC5 LINE L1 7481 7797 -164 2210 60 0 7 chr13 85085648 85085929 -16787240 - AluY SINE Alu -30 281 3 1433 181 3 90 chr13 85085938 85086259 -16786910 - AluJo SINE Alu -9 293 1 241 263 82 60 chr13 85086259 85086360 -16786809 + L1MC5 LINE L1 7804 7927 -34 586 242 86 89 chr13 85086571 85086653 -16786516 - L2 LINE L2 -78 3235 3154 2229 87 3 3 chr13 85086653 85086962 -16786207 + AluY SINE Alu 1 309 -2 586 242 86 89 chr13 85086962 85087066 -16786103 - L2 LINE L2 -159 3154 3051 1524 205 90 78 chr13 85087066 85087393 -16785776 + MLT2B1 LTR ERVL 2 339 -181 1854 142 0 19 chr13 85087393 85087702 -16785467 - AluJb SINE Alu -5 307 5 1524 205 90 78 chr13 85087702 85087887 -16785282 + MLT2B1 LTR ERVL 339 520 0 586 242 86 89 chr13 85087887 85088070 -16785099 - L2 LINE L2 -262 3051 2810 2706 197 37 2 chr13 85088070 85088613 -16784556 - MER68 LTR ERV1 0 562 1 586 242 86 89 chr13 85088613 85088648 -16784521 - L2 LINE L2 -503 2810 2776 866 195 18 12 chr13 85089220 85089389 -16783780 + MLT1A2 LTR MaLR 5 174 -200 330 115 0 0 chr13 85089392 85089453 -16783716 + (TC)n Simple_repeat Simple_repeat 2 62 0 307 225 28 38 chr13 85089453 85089538 -16783631 + MLT1A2 LTR MaLR 173 271 -119 1897 135 3 0 chr13 85089808 85090096 -16783073 + AluSx SINE Alu 6 294 -18 1525 89 9 13 chr13 85090581 85090805 -16782364 - L1MA5A LINE L1 -248 6049 5827 1477 100 44 20 chr13 85090805 85090843 -16782326 + L1MA5A LINE L1 6039 6075 -222 5033 84 20 25 chr13 85090843 85091534 -16781635 + LTR12 LTR ERV1 1 688 0 1477 100 44 20 chr13 85091534 85091731 -16781438 + L1MA5A LINE L1 6075 6293 -4 209 246 53 0 chr13 85091804 85091861 -16781308 - L2 LINE L2 -7 3306 3247 218 312 64 37 chr13 85091929 85092038 -16781131 - L2 LINE L2 -193 3079 2968 1843 156 28 97 chr13 85092112 85092395 -16780774 - MLT2C1 LTR ERVL -2 395 149 1747 160 140 9 chr13 85092395 85092745 -16780424 - MSTD LTR MaLR 0 396 1 1843 156 28 97 chr13 85092745 85092885 -16780284 - MLT2C1 LTR ERVL -248 149 1 2788 125 31 5 chr13 85093100 85093515 -16779654 + MSTB LTR MaLR 1 426 0 212 317 0 0 chr13 85093709 85093769 -16779400 + L2 LINE L2 3201 3260 -12 * 383 281 94 55 chr13 85093757 85093992 -16779177 - L3 LINE CR1 -368 1209 966 567 231 172 43 chr13 85094008 85094194 -16778975 - L2 LINE L2 0 3313 3104 1441 123 25 152 chr13 85094197 85094541 -16778628 + MER61C LTR ERV1 1 387 -47 3116 153 27 54 chr13 85094541 85094692 -16778477 - LTR9 LTR ERV1 0 612 458 225 0 0 0 chr13 85094692 85094717 -16778452 + (TG)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr13 85094716 85094737 -16778432 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 3116 153 27 54 chr13 85094717 85095214 -16777955 - LTR9 LTR ERV1 -154 458 1 1441 123 25 152 chr13 85095214 85095265 -16777904 + MER61C LTR ERV1 387 434 0 269 231 0 0 chr13 85095307 85095359 -16777810 - L2 LINE L2 -253 3060 3009 1986 205 107 12 chr13 85095544 85096056 -16777113 + MER74B LTR ERVL 61 621 -1 540 293 115 48 chr13 85096058 85096458 -16776711 - L3 LINE CR1 -753 824 398 280 174 29 43 chr13 85096468 85096537 -16776632 + MER21B LTR ERV1 1 68 -795 3769 199 62 21 chr13 85096570 85097361 -16775808 + MER21B LTR ERV1 19 841 -22 965 104 0 7 chr13 85097498 85097633 -16775536 + AluSq/x SINE Alu 2 135 -177 2234 89 0 0 chr13 85097633 85097925 -16775244 + AluSg SINE Alu 1 292 -18 2043 119 0 0 chr13 85098782 85099104 -16774065 + AluSx SINE Alu 1 322 0 1727 175 3 19 chr13 85100031 85100346 -16772823 - AluSx SINE Alu -2 310 1 1428 238 77 62 chr13 85100349 85100441 -16772728 - L1MC5 LINE L1 -32 7929 7840 3061 120 14 2 chr13 85100441 85100884 -16772285 - MER83 LTR ERV1 0 448 1 1428 238 77 62 chr13 85100884 85101002 -16772167 - L1MC5 LINE L1 -121 7840 7725 186 43 0 0 chr13 85101002 85101025 -16772144 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 1428 238 77 62 chr13 85101025 85101207 -16771962 - L1MC5 LINE L1 -236 7725 7547 2399 56 0 10 chr13 85101207 85101511 -16771658 - AluY SINE Alu -10 301 1 1428 238 77 62 chr13 85101511 85101861 -16771308 - L1MC5 LINE L1 -414 7547 7174 362 184 11 23 chr13 85101880 85101967 -16771202 + L1MC5 LINE L1 7658 7743 -218 * 478 199 150 66 chr13 85101963 85102189 -16770980 - L1MC5 LINE L1 -793 7168 6924 1562 182 3 10 chr13 85102879 85103170 -16769999 + AluJo SINE Alu 1 289 -23 497 244 7 37 chr13 85103467 85103602 -16769567 + MER74B LTR ERVL 50 180 -442 437 209 48 9 chr13 85103604 85103709 -16769460 - MER34 LTR ERV1 -2 540 432 2240 95 0 7 chr13 85103715 85104019 -16769150 + AluSx SINE Alu 1 302 -10 436 169 169 16 chr13 85104651 85104721 -16768448 + L1MB2 LINE L1 5683 5741 -430 195 42 0 0 chr13 85104721 85104745 -16768424 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 436 169 169 16 chr13 85104745 85104798 -16768371 + L1MB2 LINE L1 5741 5825 -346 2050 117 0 0 chr13 85104801 85105084 -16768085 + AluSg SINE Alu 1 283 -27 204 40 0 0 chr13 85105101 85105126 -16768043 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 285 228 61 70 chr13 85105136 85105250 -16767919 + MER5A DNA MER1_type 77 189 0 245 301 41 0 chr13 85105250 85105311 -16767858 - MIR SINE MIR -97 111 48 1858 190 39 59 chr13 85105668 85105758 -16767411 + MLT1C LTR MaLR 1 91 -376 2177 129 0 0 chr13 85105758 85106069 -16767100 + AluSx SINE Alu 1 311 -1 1858 190 39 59 chr13 85106069 85106435 -16766734 + MLT1C LTR MaLR 91 448 -19 2105 120 0 9 chr13 85106497 85106813 -16766356 + AluSq SINE Alu 1 313 0 504 274 96 0 chr13 85106899 85107087 -16766082 - MER115 DNA AcHobo 0 4031 490 1833 111 59 123 chr13 85107104 85107493 -16765676 + THE1B LTR MaLR 1 364 0 1912 113 0 30 chr13 85108114 85108415 -16764754 + AluSx SINE Alu 1 292 -20 578 219 59 27 chr13 85109225 85109412 -16763757 - L1ME3 LINE L1 -200 5962 5770 342 0 0 0 chr13 85110126 85110164 -16763005 + (CA)n Simple_repeat Simple_repeat 2 39 0 643 239 5 64 chr13 85110851 85111039 -16762130 + LTR16C LTR ERVL 315 491 0 1059 199 65 60 chr13 85111153 85111328 -16761841 + MLT1B LTR MaLR 1 174 -293 620 216 9 9 chr13 85111328 85111444 -16761725 + FLAM_A SINE Alu 1 116 -17 1059 199 65 60 chr13 85111444 85111736 -16761433 + MLT1B LTR MaLR 174 467 0 345 324 129 0 chr13 85111736 85111906 -16761263 - L3 LINE CR1 -138 1439 1248 1627 141 4 15 chr13 85112115 85112378 -16760791 + AluSx SINE Alu 1 260 -52 327 280 129 30 chr13 85112409 85112541 -16760628 - MIR3 SINE MIR -48 160 16 556 304 76 69 chr13 85112649 85113110 -16760059 - LTR16B LTR ERVL 0 464 1 467 229 155 74 chr13 85113136 85113163 -16760006 - L3 LINE CR1 -469 1108 1085 2270 80 0 0 chr13 85113163 85113450 -16759719 + AluY SINE Alu 1 287 -24 378 61 0 0 chr13 85113450 85113499 -16759670 + (TA)n Simple_repeat Simple_repeat 2 50 0 467 229 155 74 chr13 85113499 85113741 -16759428 - L3 LINE CR1 -491 1086 816 980 81 0 0 chr13 85114365 85114488 -16758681 - AluSg SINE Alu -187 123 1 1782 134 3 14 chr13 85114621 85114934 -16758235 + AluSx SINE Alu 1 310 0 295 309 82 18 chr13 85115440 85115550 -16757619 + MIR SINE MIR 25 141 -67 513 296 55 36 chr13 85115582 85115835 -16757334 - MIR SINE MIR 0 262 5 1927 121 7 10 chr13 85115864 85116162 -16757007 - AluSx SINE Alu -15 297 1 199 250 223 27 chr13 85116366 85116478 -16756691 - MER5A DNA MER1_type 0 189 56 * 330 242 57 105 chr13 85116405 85116529 -16756640 + MER5A DNA MER1_type 66 183 -6 2276 93 3 0 chr13 85116852 85117152 -16756017 + AluSx SINE Alu 1 301 -11 1598 168 152 3 chr13 85117409 85117724 -16755445 - MLT1A1 LTR MaLR 0 365 4 756 111 0 0 chr13 85118028 85118154 -16755015 + (TG)n Simple_repeat Simple_repeat 1 126 0 513 200 35 183 chr13 85118157 85118292 -16754877 + MIR SINE MIR 13 84 -178 2282 86 0 0 chr13 85118292 85118596 -16754573 + AluSg SINE Alu 1 304 -6 513 200 35 183 chr13 85118596 85118750 -16754419 + MIR SINE MIR 84 259 -3 1930 137 3 26 chr13 85119192 85119505 -16753664 - AluJb SINE Alu -6 306 1 199 218 91 0 chr13 85119795 85119850 -16753319 - MIR SINE MIR -60 148 89 1902 132 3 14 chr13 85120282 85120416 -16752753 + AluSq SINE Alu 1 135 -182 2090 120 0 0 chr13 85120416 85120716 -16752453 + AluSx SINE Alu 1 300 -12 1902 132 3 14 chr13 85120716 85120901 -16752268 + AluSq SINE Alu 135 317 0 1948 273 83 46 chr13 85121520 85121840 -16751329 + HAL1 LINE L1 1582 1889 -618 2024 138 6 3 chr13 85121840 85122151 -16751018 + AluSx SINE Alu 1 312 0 1948 273 83 46 chr13 85122151 85122647 -16750522 + HAL1 LINE L1 1889 2436 -71 1590 189 19 3 chr13 85122647 85122954 -16750215 - AluJo SINE Alu 0 312 1 1948 273 83 46 chr13 85122954 85123027 -16750142 + HAL1 LINE L1 2436 2505 -2 4127 99 152 147 chr13 85123556 85124933 -16748236 + pTR5 LTR ERV1 743 2438 0 1517 232 11 41 chr13 85124949 85125316 -16747853 + L1M4 LINE L1 16 371 -6171 2093 77 0 64 chr13 85125952 85126263 -16746906 - AluY SINE Alu -20 291 1 416 271 234 0 chr13 85126296 85126484 -16746685 + MIR SINE MIR 11 242 -20 2027 109 0 0 chr13 85126484 85126760 -16746409 + AluSc SINE Alu 2 277 -32 766 243 16 92 chr13 85126814 85127119 -16746050 - LTR41 LTR ERVL -6 767 486 1590 198 67 17 chr13 85127280 85127624 -16745545 - MLT1A1 LTR MaLR -4 361 1 597 233 96 7 chr13 85127628 85127774 -16745395 - LTR41 LTR ERVL -613 160 2 1720 134 31 3 chr13 85127960 85128251 -16744918 - AluSx SINE Alu -13 299 1 452 182 11 0 chr13 85128491 85128579 -16744590 + FLAM SINE Alu 44 132 -11 297 316 128 28 chr13 85129088 85129306 -16743863 + MIR SINE MIR 9 248 -14 1980 114 7 17 chr13 85129322 85129619 -16743550 - AluSx SINE Alu -18 294 1 1728 165 0 32 chr13 85129659 85129974 -16743195 - AluJo SINE Alu -7 305 1 364 350 46 67 chr13 85130333 85130575 -16742594 - L2 LINE L2 -2 3270 3033 2003 82 26 30 chr13 85130575 85130878 -16742291 + AluSp SINE Alu 6 307 -6 364 350 46 67 chr13 85130878 85130918 -16742251 - L2 LINE L2 -239 3033 2994 1882 157 39 55 chr13 85130918 85131089 -16742080 - THE1B LTR MaLR -7 357 185 2798 7 0 0 chr13 85131089 85131399 -16741770 + AluYb8 SINE Alu 1 310 -8 1882 157 39 55 chr13 85131399 85131590 -16741579 - THE1B LTR MaLR -179 185 1 226 343 14 14 chr13 85131594 85131734 -16741435 - L2 LINE L2 -299 2973 2834 260 229 24 108 chr13 85131928 85132092 -16741077 + L1PA8A LINE L1 5659 5809 -312 1638 164 7 17 chr13 85132112 85132399 -16740770 - AluJb SINE Alu -28 284 1 21 0 0 0 chr13 85132520 85132541 -16740628 + AT_rich Low_complexity Low_complexity 1 21 0 2076 123 7 0 chr13 85132760 85133061 -16740108 + AluSx SINE Alu 1 303 -9 223 253 76 25 chr13 85133185 85133264 -16739905 + MIR SINE MIR 180 262 0 744 90 0 10 chr13 85133618 85133718 -16739451 - THE1C LTR MaLR 0 364 266 * 791 99 0 0 chr13 85133717 85133818 -16739351 - THE1C LTR MaLR -274 101 1 2282 89 0 10 chr13 85133998 85134311 -16738858 + AluSg SINE Alu 1 310 0 2946 130 93 26 chr13 85134521 85135059 -16738110 + MER4B LTR ERV1 1 574 -36 327 133 133 33 chr13 85135133 85135173 -16737996 + AluS SINE Alu 1 36 -264 2775 10 0 0 chr13 85135173 85135483 -16737686 + AluYa5 SINE Alu 1 310 -1 2146 81 0 3 chr13 85135483 85135765 -16737404 + AluSc SINE Alu 27 309 0 327 133 133 33 chr13 85135765 85135783 -16737386 + AluS SINE Alu 35 66 -234 319 347 46 63 chr13 85136169 85136408 -16736761 + L1ME LINE L1 320 554 -5516 2703 10 0 0 chr13 85136410 85136711 -16736458 + AluYb8 SINE Alu 1 301 -17 411 73 0 0 chr13 85136722 85136777 -16736392 + (GGGGA)n Simple_repeat Simple_repeat 2 56 0 1139 172 221 23 chr13 85136788 85137178 -16735991 + LTR54B LTR ERV1 26 492 -6 216 136 23 23 chr13 85137182 85137226 -16735943 + GA-rich Low_complexity Low_complexity 4 47 0 465 217 78 0 chr13 85137262 85137377 -16735792 + L1M4 LINE L1 3638 3761 -2385 180 111 0 0 chr13 85137612 85137639 -16735530 + (T)n Simple_repeat Simple_repeat 1 27 0 2179 95 10 0 chr13 85137687 85137993 -16735176 - AluSq SINE Alu -4 309 1 26 30 0 0 chr13 85137998 85138031 -16735138 + AT_rich Low_complexity Low_complexity 1 33 0 1387 146 88 127 chr13 85138089 85138555 -16734614 + LTR7 LTR ERV1 1 448 -2 5225 104 18 28 chr13 85138821 85139608 -16733561 - MER4E LTR ERV1 0 779 1 333 314 164 28 chr13 85140331 85140618 -16732551 - L1M4 LINE L1 -2919 3227 2902 255 212 54 3 chr13 85140868 85140924 -16732245 - MLT1K LTR MaLR -325 263 140 596 256 48 24 chr13 85141041 85141209 -16731960 + MIR SINE MIR 67 238 -24 189 0 0 0 chr13 85141264 85141285 -16731884 + (TA)n Simple_repeat Simple_repeat 1 21 0 2279 70 0 13 chr13 85141285 85141587 -16731582 - AluY SINE Alu -13 298 1 1579 168 3 39 chr13 85141617 85141926 -16731243 - AluJo SINE Alu -14 298 1 2241 90 3 7 chr13 85142004 85142314 -16730855 - AluSq SINE Alu -4 309 1 1262 168 70 4 chr13 85142656 85142900 -16730269 + L1PB4 LINE L1 5895 6154 -2 477 274 0 0 chr13 85143210 85143535 -16729634 + (CA)n Simple_repeat Simple_repeat 1 325 0 408 312 88 57 chr13 85143975 85144766 -16728403 + L2 LINE L2 2418 3272 0 264 155 17 0 chr13 85145315 85145373 -16727796 + L1 LINE L1 4372 4430 -1716 2577 46 0 0 chr13 85145390 85145697 -16727472 + AluY SINE Alu 1 307 -4 1210 208 29 18 chr13 85145810 85146089 -16727080 + LTR53 LTR ERVL 227 508 -11 2394 275 37 43 chr13 85146099 85146866 -16726303 + L1MC4a LINE L1 4432 4645 -1501 1879 168 0 13 chr13 85146866 85147182 -16725987 + AluJb SINE Alu 1 312 0 2394 275 37 43 chr13 85147182 85147932 -16725237 + L1MC4a LINE L1 4645 5398 -748 436 115 0 0 chr13 85147934 85147995 -16725174 + AluS SINE Alu 2 62 -256 1278 128 18 5 chr13 85148005 85148224 -16724945 + MER75B DNA T2_type 18 239 -4 1106 71 6 60 chr13 85148228 85148396 -16724773 - Tigger1 DNA MER2_type -180 2238 2080 2272 102 0 3 chr13 85148396 85148709 -16724460 - AluSp SINE Alu -1 312 1 1867 138 13 33 chr13 85148796 85149100 -16724069 - AluSx SINE Alu -14 298 1 2013 148 0 0 chr13 85149125 85149436 -16723733 + AluSx SINE Alu 1 311 -1 1952 106 0 11 chr13 85149469 85149751 -16723418 + AluSx SINE Alu 1 279 -33 225 284 129 17 chr13 85150083 85150199 -16722970 + L2 LINE L2 3184 3312 -1 389 256 103 13 chr13 85150368 85150524 -16722645 + L1MC5 LINE L1 7724 7893 -68 1806 143 0 4 chr13 85150602 85150881 -16722288 + AluSx SINE Alu 29 306 -6 1798 141 3 3 chr13 85150891 85151208 -16721961 + AluJb SINE Alu 1 317 0 739 134 0 70 chr13 85151218 85151360 -16721809 + FLAM_C SINE Alu 2 133 0 225 275 174 46 chr13 85151430 85151539 -16721630 + MIR SINE MIR 122 244 -18 477 221 99 8 chr13 85151546 85151677 -16721492 + MER69 DNA AcHobo 5 147 -1079 2192 102 0 0 chr13 85152477 85152780 -16720389 + AluSx SINE Alu 1 303 -9 2245 75 0 35 chr13 85153039 85153358 -16719811 + AluSq SINE Alu 1 308 -5 2074 110 0 10 chr13 85153634 85153935 -16719234 + AluSq SINE Alu 1 298 -15 23 0 0 0 chr13 85154029 85154052 -16719117 + AT_rich Low_complexity Low_complexity 1 23 0 2668 197 83 33 chr13 85154056 85154670 -16718499 - L1MB5 LINE L1 -12 6162 5518 1828 116 56 3 chr13 85154707 85154991 -16718178 + AluSq SINE Alu 1 299 -14 315 322 171 0 chr13 85155087 85155233 -16717936 + MIR SINE MIR 86 256 -6 579 156 25 57 chr13 85155262 85155384 -16717785 - FLAM_C SINE Alu -24 119 2 261 0 0 0 chr13 85155488 85155517 -16717652 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 236 261 38 127 chr13 85155952 85156020 -16717149 - MLT1K LTR MaLR -290 298 250 2665 118 25 43 chr13 85156020 85156510 -16716659 + MER31A LTR ERV1 1 481 -4 236 261 38 127 chr13 85156510 85156598 -16716571 - MLT1K LTR MaLR -338 250 156 1386 210 24 3 chr13 85156685 85156976 -16716193 + AluJo SINE Alu 1 297 -15 1589 191 7 3 chr13 85156983 85157287 -16715882 + AluSx SINE Alu 1 305 -7 436 286 43 0 chr13 85157300 85157440 -16715729 - L1MB5 LINE L1 -990 5156 5011 493 182 0 30 chr13 85157452 85157551 -16715618 - FLAM_A SINE Alu -17 125 30 1171 35 0 0 chr13 85157601 85157742 -16715427 + AluY SINE Alu 1 141 -170 326 289 0 0 chr13 85157742 85157832 -16715337 + G-rich Low_complexity Low_complexity 5 94 0 1945 151 0 3 chr13 85157838 85158123 -16715046 - AluSx SINE Alu -28 284 1 813 148 7 22 chr13 85158130 85158267 -16714902 - FLAM_C SINE Alu -10 133 1 649 163 39 12 chr13 85158267 85158407 -16714762 - L1MC3 LINE L1 -327 5851 5706 2506 44 3 7 chr13 85158783 85159076 -16714093 + AluY SINE Alu 1 292 -19 208 237 53 0 chr13 85259621 85259651 -16613518 + T-rich Low_complexity Low_complexity 5 32 -52 3681 156 27 24 chr13 85259651 85260403 -16612766 - L1MB3 LINE L1 -2 6181 5428 208 237 53 0 chr13 85260403 85260448 -16612721 + T-rich Low_complexity Low_complexity 32 84 0 547 114 0 0 chr13 85260460 85260548 -16612621 - L1MB3 LINE L1 -743 5440 5353 1137 146 21 47 chr13 85261249 85261441 -16611728 + AluJo SINE Alu 1 187 -125 690 172 0 16 chr13 85261441 85261563 -16611606 + AluJb SINE Alu 148 267 -45 431 194 132 0 chr13 85261729 85261858 -16611311 - MER58C DNA MER1_type 0 215 70 24 32 0 0 chr13 85262027 85262058 -16611111 + AT_rich Low_complexity Low_complexity 1 31 0 2064 152 143 2 chr13 85263362 85263817 -16609352 - L1MB7 LINE L1 -19 6165 5647 22 0 0 0 chr13 85263915 85263937 -16609232 + AT_rich Low_complexity Low_complexity 1 22 0 6383 61 16 14 chr13 85264053 85265321 -16607848 - L1PA7 LINE L1 -21 6133 4873 189 0 0 0 chr13 85265332 85265353 -16607816 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1896 105 111 22 chr13 85265966 85266281 -16606888 - MER61A LTR ERV1 0 343 1 2583 204 46 6 chr13 85266471 85267011 -16606158 - MER68 LTR ERV1 0 562 1 552 125 0 10 chr13 85267055 85267151 -16606018 + AluJb SINE Alu 137 231 -81 22 0 0 0 chr13 85267173 85267195 -16605974 + AT_rich Low_complexity Low_complexity 1 22 0 2236 90 3 26 chr13 85267680 85267991 -16605178 - AluSg SINE Alu -6 304 1 701 141 124 0 chr13 85269910 85270031 -16603138 - AluJo SINE Alu -176 136 1 561 110 0 0 chr13 85270718 85270809 -16602360 + (TCTCCC)n Simple_repeat Simple_repeat 3 93 0 7399 160 41 17 chr13 85270824 85271413 -16601756 - L1M3 LINE L1 -528 6474 5901 1669 193 14 7 chr13 85271413 85271698 -16601471 - AluJo SINE Alu -25 287 1 7399 160 41 17 chr13 85271698 85273066 -16600103 - L1M3 LINE L1 -1101 5901 4489 599 171 0 0 chr13 85273081 85273186 -16599983 - AluJb SINE Alu -16 296 192 1441 178 0 19 chr13 85273186 85273445 -16599724 - AluJo SINE Alu -58 254 1 5562 187 51 21 chr13 85273466 85274794 -16598375 - L1M3 LINE L1 -2377 4471 3033 2112 132 0 26 chr13 85274794 85275105 -16598064 - AluSx SINE Alu -9 303 1 5562 187 51 21 chr13 85275105 85276213 -16596956 - L1M3 LINE L1 -3815 3033 1960 40769 33 23 1 chr13 85276346 85282365 -16590804 - L1PA2 LINE L1 0 6155 2 9047 202 35 14 chr13 85282365 85284293 -16588876 - L1M3 LINE L1 -4881 1968 1 1386 212 22 24 chr13 85284294 85284709 -16588460 - L1M4 LINE L1 -982 5164 4751 824 245 131 4 chr13 85284713 85285072 -16588097 - MER57A LTR ERV1 0 403 22 1870 165 0 3 chr13 85285101 85285386 -16587783 - AluSx SINE Alu -28 284 1 845 229 43 43 chr13 85285405 85285780 -16587389 - L1M4 LINE L1 -1400 4746 4372 27 49 0 0 chr13 85286214 85286255 -16586914 + AT_rich Low_complexity Low_complexity 1 41 0 381 185 92 59 chr13 85286808 85286927 -16586242 + MER65A LTR ERV1 1 123 -322 361 134 45 0 chr13 85286976 85287043 -16586126 + L1M2 LINE L1 481 550 -6299 438 275 105 39 chr13 85287433 85287662 -16585507 - MIR SINE MIR -14 248 5 239 250 69 0 chr13 85287943 85288015 -16585154 + MIR3 SINE MIR 86 162 -46 272 314 189 46 chr13 85288737 85289466 -16583703 - L2 LINE L2 -92 3180 2360 640 226 104 77 chr13 85290262 85290589 -16582580 + L1M4 LINE L1 3807 4142 -2004 2127 115 20 13 chr13 85290589 85290893 -16582276 - AluSx SINE Alu -6 306 1 429 216 3 50 chr13 85290905 85291040 -16582129 - L1M4 LINE L1 -1828 4318 4187 234 186 0 0 chr13 85291041 85291084 -16582085 + THE1C LTR MaLR 66 108 -247 2073 113 3 3 chr13 85291106 85291416 -16581753 + THE1C LTR MaLR 66 375 0 933 203 176 20 chr13 85291440 85291883 -16581286 + L1M4 LINE L1 4157 4668 -1478 621 150 100 0 chr13 85292505 85292605 -16580564 + FRAM SINE Alu 36 145 -31 1610 164 7 53 chr13 85293332 85293631 -16579538 + AluJo SINE Alu 7 291 -21 2219 96 0 22 chr13 85293695 85294008 -16579161 - AluSc SINE Alu -3 306 1 2317 96 7 3 chr13 85294213 85294514 -16578655 + AluSx SINE Alu 1 302 -10 3100 180 44 51 chr13 85294549 85295339 -16577830 - LTR1 LTR ERV1 0 785 1 2150 125 64 9 chr13 85295888 85296233 -16576936 + THE1B LTR MaLR 1 364 0 2087 124 3 0 chr13 85296756 85297039 -16576130 - AluSx SINE Alu -28 284 1 2900 184 17 34 chr13 85297132 85297718 -16575451 - MER21B LTR ERV1 -54 809 234 999 252 59 28 chr13 85297723 85298013 -16575156 - MER21B LTR ERV1 -564 299 1 986 143 63 0 chr13 85298249 85298424 -16574745 + MER2 DNA MER2_type 160 345 0 180 318 58 65 chr13 85298852 85299006 -16574163 + L2 LINE L2 2253 2405 -909 371 55 18 0 chr13 85299024 85299079 -16574090 + Alu SINE Alu 244 299 -3 248 182 0 0 chr13 85299160 85299204 -16573965 + MIR SINE MIR 209 252 -10 2081 131 0 3 chr13 85299312 85299609 -16573560 - AluSx SINE Alu -16 296 1 1549 188 41 4 chr13 85299762 85300033 -16573136 + AluJo SINE Alu 1 281 -31 334 325 16 24 chr13 85300207 85300333 -16572836 + MIR3 SINE MIR 63 187 -21 2784 86 6 0 chr13 85300508 85300870 -16572299 - THE1B LTR MaLR 0 364 1 1668 179 124 22 chr13 85300988 85301534 -16571635 - Charlie1 DNA MER1_type -18 2743 2142 323 270 14 0 chr13 85301527 85301601 -16571568 - Charlie1 DNA MER1_type -2686 75 1 * 272 264 42 0 chr13 85301688 85301760 -16571409 - L1ME LINE L1 -594 5568 5494 199 283 20 61 chr13 85302577 85302676 -16570493 - MIR SINE MIR -57 205 111 918 268 128 25 chr13 85302808 85303244 -16569925 - MLT1E LTR MaLR 0 593 113 718 133 117 8 chr13 85303363 85303491 -16569678 + AluJo SINE Alu 1 142 -170 381 185 148 28 chr13 85303492 85303600 -16569569 - MLT1E LTR MaLR -472 121 1 1645 170 3 18 chr13 85303966 85304249 -16568920 + AluJo SINE Alu 4 282 -30 2451 84 0 0 chr13 85304275 85304584 -16568585 + AluSg SINE Alu 1 309 -1 575 230 40 35 chr13 85305652 85305852 -16567317 + L1MB8 LINE L1 5977 6177 -1 873 182 7 0 chr13 85306998 85307141 -16566028 + AluJo SINE Alu 145 288 -24 1763 132 75 11 chr13 85307152 85307432 -16565737 + AluSx SINE Alu 1 298 -14 1266 196 0 9 chr13 85308117 85308336 -16564833 - AluJo SINE Alu -20 292 76 21 0 0 0 chr13 85309091 85309112 -16564057 + AT_rich Low_complexity Low_complexity 1 21 0 303 299 46 148 chr13 85309823 85310127 -16563042 - L2 LINE L2 -14 3258 2986 1913 152 33 55 chr13 85310289 85310569 -16562600 - L1MD1 LINE L1 -83 6159 5889 527 189 23 53 chr13 85310569 85310701 -16562468 - FLAM_A SINE Alu -5 128 1 1913 152 33 55 chr13 85310701 85310840 -16562329 - L1MD1 LINE L1 -353 5889 5749 1857 74 4 0 chr13 85310840 85311069 -16562100 + AluSp SINE Alu 63 292 -21 1286 185 33 42 chr13 85311070 85311400 -16561769 - L1MDa LINE L1 -6189 351 25 2039 109 13 0 chr13 85311404 85311707 -16561462 - L1PA8 LINE L1 -2 6170 5864 308 192 169 31 chr13 85312996 85313126 -16560043 - L1ME4a LINE L1 -34 6087 5940 261 0 0 0 chr13 85313145 85313174 -16559995 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr13 85313173 85313193 -16559976 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr13 85313443 85313470 -16559699 + (TA)n Simple_repeat Simple_repeat 2 28 0 3847 187 93 37 chr13 85313646 85314735 -16558434 + L1MD2 LINE L1 5201 6355 -4 187 322 0 0 chr13 85315133 85315192 -16557977 - L2 LINE L2 0 3313 3255 680 32 11 0 chr13 85315739 85315833 -16557336 + L1P LINE L1 5302 5396 -759 1606 257 73 55 chr13 85315957 85316435 -16556734 - HERVL LTR ERVL -803 4682 4171 2281 113 0 0 chr13 85316435 85316735 -16556434 - AluSx SINE Alu -12 300 1 1606 257 73 55 chr13 85316735 85316890 -16556279 - HERVL LTR ERVL -1314 4171 4020 1807 154 3 41 chr13 85317104 85317422 -16555747 - AluJo SINE Alu -6 306 1 258 246 14 0 chr13 85317511 85317580 -16555589 - HERVL LTR ERVL -4378 1276 1207 24 67 0 0 chr13 85317597 85317642 -16555527 + AT_rich Low_complexity Low_complexity 1 45 0 277 281 12 12 chr13 85317643 85317725 -16555444 - HERVL LTR ERVL -4561 1203 1122 862 206 0 28 chr13 85317729 85317909 -16555260 - MER58B DNA MER1_type 0 341 167 430 325 62 29 chr13 85317922 85318494 -16554675 - HERVL LTR ERVL -4639 1125 462 2217 130 0 32 chr13 85318560 85318905 -16554264 - MER1B DNA MER1_type 0 337 4 272 237 17 51 chr13 85319220 85319338 -16553831 - LTR41 LTR ERVL -11 762 649 516 264 54 6 chr13 85319745 85319912 -16553257 - LTR41 LTR ERVL -595 178 4 1139 280 83 30 chr13 85319989 85320449 -16552720 + L2 LINE L2 2815 3298 -15 25 31 0 0 chr13 85320731 85320763 -16552406 + AT_rich Low_complexity Low_complexity 1 32 0 31 76 0 0 chr13 85320979 85321045 -16552124 + AT_rich Low_complexity Low_complexity 1 66 0 2571 42 0 19 chr13 85321211 85321521 -16551648 - AluY SINE Alu -7 304 1 1384 180 75 56 chr13 85321807 85322112 -16551057 - AluJo SINE Alu 0 312 2 1898 160 3 13 chr13 85322259 85322572 -16550597 - AluJb SINE Alu -2 310 1 1923 156 7 10 chr13 85322799 85323106 -16550063 + AluSx SINE Alu 1 306 -6 667 236 139 3 chr13 85323196 85323484 -16549685 + L1M4 LINE L1 2385 2711 -3435 329 258 26 108 chr13 85323507 85323701 -16549468 + L1M4 LINE L1 3711 3888 -2258 424 116 0 0 chr13 85323913 85323982 -16549187 - Alu SINE Alu -4 307 239 1962 116 4 4 chr13 85323985 85324260 -16548909 - AluSx SINE Alu -37 275 1 383 293 48 58 chr13 85324367 85324654 -16548515 - L1M4 LINE L1 -2995 3151 2869 2108 129 7 0 chr13 85324654 85324941 -16548228 - AluSx SINE Alu -23 289 1 383 293 48 58 chr13 85324941 85325134 -16548035 - L1M4 LINE L1 -3277 2869 2676 1398 218 85 28 chr13 85325492 85325882 -16547287 + MLT1C LTR MaLR 53 464 -3 231 36 0 0 chr13 85327212 85327240 -16545929 + (T)n Simple_repeat Simple_repeat 1 28 0 233 303 97 48 chr13 85327331 85327559 -16545610 + L2 LINE L2 1547 1785 -1529 382 284 162 0 chr13 85327731 85327879 -16545290 + L2 LINE L2 1786 1957 -1357 2586 116 23 28 chr13 85327886 85328231 -16544938 + MSTA LTR MaLR 1 345 -83 1998 134 53 39 chr13 85328231 85328590 -16544579 + THE1B LTR MaLR 1 364 0 2586 116 23 28 chr13 85328590 85328674 -16544495 + MSTA LTR MaLR 345 428 0 1170 246 131 94 chr13 85328679 85328934 -16544235 + L2 LINE L2 1982 2226 -1088 2080 108 16 22 chr13 85328934 85329248 -16543921 + AluSx SINE Alu 1 312 0 1170 246 131 94 chr13 85329248 85329702 -16543467 + L2 LINE L2 2226 2717 -597 1002 224 39 0 chr13 85329736 85329995 -16543174 - L1M4 LINE L1 -2322 3824 3556 1972 100 97 0 chr13 85331084 85331363 -16541806 - AluY SINE Alu -5 306 1 2346 90 0 7 chr13 85333100 85333400 -16539769 - AluSg1 SINE Alu -11 298 1 2262 98 10 3 chr13 85334369 85334665 -16538504 + AluSq SINE Alu 1 298 -15 199 262 95 24 chr13 85335347 85335431 -16537738 + L2 LINE L2 3223 3312 -1 233 288 23 45 chr13 85338041 85338173 -16534996 + L3 LINE CR1 1391 1519 -58 338 252 35 52 chr13 85338187 85338302 -16534867 + MER5B DNA MER1_type 2 114 -64 1943 122 11 7 chr13 85338725 85339012 -16534157 - AluSx SINE Alu -24 288 1 24 32 0 0 chr13 85339243 85339274 -16533895 + AT_rich Low_complexity Low_complexity 1 31 0 271 295 36 89 chr13 85339614 85339726 -16533443 + L2 LINE L2 3136 3241 -31 2431 49 0 3 chr13 85340415 85340735 -16532434 - AluY SINE Alu 0 319 1 230 245 0 0 chr13 85340802 85340851 -16532318 + GA-rich Low_complexity Low_complexity 1 49 0 2425 87 3 0 chr13 85340852 85341161 -16532008 - AluSp SINE Alu -3 310 1 237 282 48 51 chr13 85341407 85341779 -16531390 + HAL1 LINE L1 818 1188 -1319 4582 184 40 13 chr13 85341789 85343540 -16529629 + L1MB2 LINE L1 4369 6170 -1 350 297 45 9 chr13 85343543 85343654 -16529515 + HAL1 LINE L1 1187 1301 -1206 286 278 30 15 chr13 85343704 85343837 -16529332 + L1MB8 LINE L1 2946 3080 -3066 541 223 38 65 chr13 85343842 85344026 -16529143 + MER21B LTR ERV1 576 754 -109 2051 199 57 2 chr13 85344070 85344577 -16528592 + L1MB8 LINE L1 4550 5084 -1062 8914 118 59 12 chr13 85344579 85346094 -16527075 - Tigger2 DNA MER2_type 0 2718 1134 5405 123 121 11 chr13 85347310 85348313 -16524856 - Tigger2 DNA MER2_type -1605 1113 1 2118 190 42 26 chr13 85348316 85349234 -16523935 + L1MB8 LINE L1 5088 6168 -10 762 262 64 17 chr13 85349237 85349642 -16523527 + L1ME1 LINE L1 1853 2276 -4120 936 223 89 7 chr13 85349645 85349914 -16523255 - MER58B DNA MER1_type -4 337 47 391 265 90 0 chr13 85349986 85350152 -16523017 + L1ME1 LINE L1 2262 2442 -3773 1673 151 87 65 chr13 85350165 85350457 -16522712 + MSTA LTR MaLR 4 309 -119 647 157 8 8 chr13 85350457 85350578 -16522591 + L1MB8 LINE L1 6040 6160 -18 1673 151 87 65 chr13 85350578 85350701 -16522468 + MSTA LTR MaLR 309 428 0 8120 185 18 1 chr13 85350701 85352189 -16520980 + MSTA-int LTR MaLR 1 1513 -138 895 87 0 0 chr13 85352183 85352310 -16520859 - MST-int LTR MaLR -12 1639 1513 * 2426 232 103 41 chr13 85352323 85353382 -16519787 + L1ME1 LINE L1 3696 4688 -1715 2263 143 58 31 chr13 85353382 85353796 -16519373 + MSTA LTR MaLR 2 426 -2 2426 232 103 41 chr13 85353796 85354444 -16518725 + L1ME1 LINE L1 4688 5294 -1109 2144 134 0 3 chr13 85354444 85354735 -16518434 + AluSx SINE Alu 1 290 -22 2426 232 103 41 chr13 85354735 85354784 -16518385 + L1ME1 LINE L1 5294 6390 -13 1675 168 14 0 chr13 85354908 85355193 -16517976 + AluJo SINE Alu 7 295 -17 302 269 119 60 chr13 85355388 85355589 -16517580 + L1MEc LINE L1 2823 3035 -3180 1492 182 24 20 chr13 85355630 85355927 -16517242 + AluJo SINE Alu 1 298 -14 369 276 159 33 chr13 85356809 85357023 -16516146 - HAL1b LINE L1 -417 931 691 303 260 0 50 chr13 85357062 85357162 -16516007 + L1MC4 LINE L1 6612 6706 -1336 5322 116 23 12 chr13 85357308 85358210 -16514959 - L1M1 LINE L1 -4898 2667 1756 3771 48 89 2 chr13 85358238 85359174 -16513995 - MER11A LTR ERVK 0 1266 1 9809 156 32 16 chr13 85359174 85360883 -16512286 - L1M1 LINE L1 -5818 1747 13 341 193 48 24 chr13 85360897 85360980 -16512189 - L1MEc LINE L1 -4086 2310 2226 2565 196 56 19 chr13 85361705 85362275 -16510894 - L1MD3 LINE L1 -1 7994 7404 513 163 0 22 chr13 85362275 85362367 -16510802 - MLT1F1 LTR MaLR -442 125 36 944 203 72 30 chr13 85362367 85362604 -16510565 + MLT1D LTR MaLR 1 247 -258 229 311 113 44 chr13 85362755 85362930 -16510239 + L1ME LINE L1 5448 5646 -475 1741 181 13 3 chr13 85362930 85363229 -16509940 - AluJo SINE Alu -10 302 1 229 311 113 44 chr13 85363229 85363301 -16509868 + L1ME LINE L1 5646 5712 -409 214 326 53 0 chr13 85363374 85363469 -16509700 + L2 LINE L2 2472 2571 -743 185 145 97 65 chr13 85364360 85364422 -16508747 - MIR SINE MIR -77 185 122 197 196 22 22 chr13 85367674 85367720 -16505449 - MIR SINE MIR -111 151 106 189 0 0 0 chr13 85367830 85367851 -16505318 + (T)n Simple_repeat Simple_repeat 1 21 0 777 161 179 12 chr13 85367889 85368051 -16505118 - MER5A DNA MER1_type 0 189 1 415 237 46 98 chr13 85368251 85368445 -16504724 + L1MA9 LINE L1 6091 6274 -38 989 324 57 49 chr13 85369748 85369967 -16503202 + L2 LINE L2 991 1207 -2107 1792 167 3 22 chr13 85369967 85370284 -16502885 - AluJo SINE Alu -1 311 1 989 324 57 49 chr13 85370284 85370676 -16502493 + L2 LINE L2 1207 1607 -1707 384 74 4 0 chr13 85370681 85370734 -16502435 - MSTD LTR MaLR -13 383 324 240 262 202 0 chr13 85371532 85371616 -16501553 - L2 LINE L2 -4 3268 3168 395 122 49 49 chr13 85371836 85371918 -16501251 - L1PA16 LINE L1 0 6166 6085 2576 103 86 39 chr13 85371918 85372275 -16500894 + MSTA LTR MaLR 1 381 -47 2203 98 0 29 chr13 85372275 85372582 -16500587 + AluSg1 SINE Alu 1 298 -11 2576 103 86 39 chr13 85372582 85372633 -16500536 + MSTA LTR MaLR 381 428 0 8299 138 33 101 chr13 85372633 85374403 -16498766 + MSTA-int LTR MaLR 1 1651 0 621 72 12 0 chr13 85374403 85374486 -16498683 + MSTA LTR MaLR 1 84 -344 4951 200 55 25 chr13 85374494 85374769 -16498400 - L1P5 LINE L1 -558 5598 5333 2397 85 0 0 chr13 85374769 85375063 -16498106 - AluY SINE Alu -17 294 1 4951 200 55 25 chr13 85375063 85376361 -16496808 - L1P5 LINE L1 -823 5333 3962 321 161 0 16 chr13 85376383 85376445 -16496724 + L1 LINE L1 4519 4579 -1567 8456 194 31 25 chr13 85376457 85377322 -16495847 - L1 LINE L1 -1374 4772 3914 1650 156 50 0 chr13 85377322 85377604 -16495565 - AluSx SINE Alu -16 296 1 8456 194 31 25 chr13 85377604 85377723 -16495446 - L1 LINE L1 -2232 3914 3797 381 22 0 0 chr13 85377723 85377769 -16495400 + (TG)n Simple_repeat Simple_repeat 1 46 0 8456 194 31 25 chr13 85377769 85378782 -16494387 - L1 LINE L1 -2349 3797 2761 7232 66 16 28 chr13 85378787 85380549 -16492620 - SVA Other Other -551 1386 51 195 368 0 0 chr13 85381117 85381185 -16491984 - MIR SINE MIR 0 262 195 1024 123 58 29 chr13 85381381 85381552 -16491617 - MER1B DNA MER1_type -4 335 160 16567 154 27 8 chr13 85381552 85385537 -16487632 - L1M1 LINE L1 -743 6822 2909 2028 123 0 0 chr13 85385653 85385930 -16487239 - AluSx SINE Alu -8 304 28 295 230 230 10 chr13 85386593 85386693 -16486476 + L2 LINE L2 3191 3312 -1 2283 90 0 23 chr13 85386784 85387085 -16486084 - AluSg SINE Alu -16 294 1 4550 166 25 17 chr13 85387102 85387768 -16485401 - L1MB2 LINE L1 -2 6169 5493 2011 118 0 56 chr13 85387768 85388090 -16485079 - AluSx SINE Alu -8 304 1 4550 166 25 17 chr13 85388090 85388293 -16484876 - L1MB2 LINE L1 -678 5493 5293 367 261 0 11 chr13 85388299 85388391 -16484778 + MIR SINE MIR 128 218 -44 2273 103 0 0 chr13 85388778 85389068 -16484101 + AluSq SINE Alu 1 290 -23 227 157 14 0 chr13 85389069 85389139 -16484030 + (TA)n Simple_repeat Simple_repeat 1 71 0 245 269 64 78 chr13 85391035 85391254 -16481915 - L1MC4 LINE L1 -1 8041 7826 1080 211 89 53 chr13 85391294 85391371 -16481798 - L1ME2 LINE L1 -10 6223 6150 1473 180 123 64 chr13 85391371 85391809 -16481360 - MER31B LTR ERV1 0 466 3 1080 211 89 53 chr13 85391809 85392068 -16481101 - L1ME2 LINE L1 -83 6150 5875 1134 194 16 0 chr13 85392070 85392256 -16480913 - MER58A DNA MER1_type -1 223 35 1385 244 84 16 chr13 85392326 85392839 -16480330 - L1ME2 LINE L1 -352 5881 5334 2765 252 115 40 chr13 85392839 85393241 -16479928 - L1ME2 LINE L1 -2254 3961 3590 2129 130 3 16 chr13 85393241 85393557 -16479612 - AluJb SINE Alu 0 312 1 2765 252 115 40 chr13 85393557 85393817 -16479352 - L1ME2 LINE L1 -2625 3590 3351 2416 82 3 3 chr13 85393817 85394120 -16479049 - AluSc SINE Alu -6 303 1 2765 252 115 40 chr13 85394120 85395175 -16477994 - L1ME2 LINE L1 -2864 3351 2134 745 234 8 0 chr13 85395185 85395313 -16477856 - FAM SINE Alu -56 129 1 300 288 27 14 chr13 85395347 85395534 -16477635 - HAL1b LINE L1 -137 2370 794 23 33 0 0 chr13 85396069 85396099 -16477070 + AT_rich Low_complexity Low_complexity 1 30 0 319 322 137 7 chr13 85396136 85396282 -16476887 - HAL1 LINE L1 -643 1864 1700 238 240 70 50 chr13 85396304 85396404 -16476765 + HAL1 LINE L1 1523 1624 -883 476 289 179 32 chr13 85396959 85397620 -16475549 - HAL1b LINE L1 -492 856 99 1220 281 65 26 chr13 85397652 85398425 -16474744 + L1M3 LINE L1 2360 4814 -1332 250 200 55 0 chr13 85398461 85398516 -16474653 + L1M3 LINE L1 5678 5735 -436 240 35 0 0 chr13 85398660 85398689 -16474480 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 732 147 0 53 chr13 85398694 85398884 -16474285 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 656 176 0 0 chr13 85398902 85399004 -16474165 - FLAM_C SINE Alu -40 103 2 2443 45 0 3 chr13 85400285 85400571 -16472598 + AluY SINE Alu 1 285 -26 22 35 0 0 chr13 85401416 85401445 -16471724 + AT_rich Low_complexity Low_complexity 1 29 0 5706 219 105 33 chr13 85403355 85403571 -16469598 - L1PA15-16 LINE L1 -3736 3113 2914 1721 68 0 0 chr13 85403571 85403777 -16469392 - AluY SINE Alu -18 293 88 5706 219 105 33 chr13 85403777 85405292 -16467877 - L1PA15-16 LINE L1 -3935 2914 1268 275 320 94 63 chr13 85405575 85405894 -16467275 - L2 LINE L2 -363 2951 2623 221 281 193 22 chr13 85406455 85406590 -16466579 + MIR SINE MIR 78 235 -27 1500 168 71 20 chr13 85406637 85406934 -16466235 - AluJb SINE Alu 0 312 1 729 225 0 0 chr13 85406937 85407066 -16466103 - FLAM_A SINE Alu -1 132 4 801 226 105 5 chr13 85407073 85407263 -16465906 - MER34C LTR ERV1 -373 212 4 286 197 0 56 chr13 85407951 85408022 -16465147 + MER3 DNA MER1_type 2 68 -141 1948 189 149 31 chr13 85408022 85408545 -16464624 + MER34C LTR ERV1 1 585 0 411 165 63 0 chr13 85408545 85408623 -16464546 + MER3 DNA MER1_type 72 154 -55 261 259 92 23 chr13 85408714 85408845 -16464324 - L1MC4 LINE L1 -19 8023 7884 568 221 77 55 chr13 85408933 85409114 -16464055 - L1ME2 LINE L1 -15 6149 5965 1927 155 73 42 chr13 85409252 85409606 -16463563 + MLT1A1 LTR MaLR 1 365 0 2975 232 28 12 chr13 85409841 85410484 -16462685 + MER82 DNA MER2_type 1 653 0 2008 299 23 20 chr13 85410484 85411177 -16461992 - ERVL LTR ERVL -330 5434 4740 1740 118 78 0 chr13 85511603 85511858 -16361311 + AluSx SINE Alu 1 275 -37 985 159 0 17 chr13 85512001 85512177 -16360992 + FRAM SINE Alu 1 165 -11 197 65 32 0 chr13 85512266 85512297 -16360872 + (CA)n Simple_repeat Simple_repeat 2 33 0 3657 148 14 71 chr13 85512773 85513502 -16359667 + LTR8 LTR ERV1 1 687 -4 1894 111 44 0 chr13 85513573 85513875 -16359294 + AluSp SINE Alu 1 314 0 180 0 0 0 chr13 85513877 85513897 -16359272 + (TA)n Simple_repeat Simple_repeat 2 21 0 348 24 0 0 chr13 85513905 85513946 -16359223 + (CA)n Simple_repeat Simple_repeat 2 42 0 255 268 127 35 chr13 85514105 85514247 -16358922 - MIR SINE MIR -38 224 70 265 230 27 40 chr13 85514798 85514857 -16358312 - MER58C DNA MER1_type -2230 190 131 1706 166 13 22 chr13 85514857 85515170 -16357999 - AluJo SINE Alu -2 310 1 265 230 27 40 chr13 85515170 85515184 -16357985 - MER58C DNA MER1_type -2289 131 118 570 259 23 23 chr13 85516232 85516406 -16356763 + MIR SINE MIR 2 175 -87 2124 105 3 0 chr13 85516729 85517024 -16356145 - AluSx SINE Alu -9 303 8 211 194 0 0 chr13 85517172 85517208 -16355961 + (CA)n Simple_repeat Simple_repeat 2 37 0 217 284 0 30 chr13 85517983 85518050 -16355119 + MIR SINE MIR 2 66 -196 1752 250 42 57 chr13 85518209 85518882 -16354287 + L1MB7 LINE L1 5512 6174 -10 374 246 115 16 chr13 85518917 85519039 -16354130 + L2 LINE L2 3137 3270 -2 4825 77 15 25 chr13 85519191 85519857 -16353312 + PABL_A LTR ERV1 2 660 0 2261 59 42 0 chr13 85523870 85524158 -16349011 + AluY SINE Alu 1 300 -11 2244 89 6 6 chr13 85525404 85525717 -16347452 - AluSq SINE Alu 0 313 1 1450 189 0 20 chr13 85525769 85526066 -16347103 + AluJo SINE Alu 1 291 -21 289 218 218 20 chr13 85526569 85526670 -16346499 + MIR SINE MIR 20 140 -122 348 276 69 41 chr13 85526846 85527023 -16346146 - L1MC4 LINE L1 -1140 6645 6538 200 184 0 0 chr13 85527023 85527061 -16346108 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 2561 224 30 27 chr13 85527318 85527486 -16345683 - L1ME1 LINE L1 -213 5953 5787 2262 88 3 0 chr13 85527486 85527781 -16345388 - AluSp SINE Alu -17 296 1 2561 224 30 27 chr13 85527781 85528075 -16345094 - L1ME1 LINE L1 -379 5787 5495 2125 108 10 0 chr13 85528075 85528371 -16344798 - AluSx SINE Alu -13 299 1 2561 224 30 27 chr13 85528371 85528993 -16344176 - L1ME1 LINE L1 -671 5495 4857 21 0 0 0 chr13 85529350 85529371 -16343798 + AT_rich Low_complexity Low_complexity 1 21 0 2023 109 3 0 chr13 85529526 85529810 -16343359 - AluSx SINE Alu -17 295 11 505 45 0 0 chr13 85532056 85532122 -16341047 + L1MA1 LINE L1 6237 6302 0 25 51 0 0 chr13 85532134 85532173 -16340996 + AT_rich Low_complexity Low_complexity 1 39 0 1794 199 38 30 chr13 85532892 85533285 -16339884 + MSTD LTR MaLR 1 396 0 292 346 28 0 chr13 85537913 85538020 -16335149 + MIR3 SINE MIR 98 207 -1 369 205 325 7 chr13 85539793 85539944 -16333225 + L1MB8 LINE L1 5399 5597 -577 3513 147 92 85 chr13 85539996 85540402 -16332767 - MER54B LTR ERVL -3 790 375 342 203 14 0 chr13 85540402 85540476 -16332693 + L1MA4 LINE L1 6210 6284 -16 3513 147 92 85 chr13 85540476 85540854 -16332315 - MER54B LTR ERVL -418 375 1 2376 166 82 2 chr13 85540854 85541341 -16331828 + L1MB8 LINE L1 5615 6140 -38 815 188 7 0 chr13 85541471 85541615 -16331554 - FRAM SINE Alu -31 145 1 1213 242 180 33 chr13 85541675 85542355 -16330814 + L1MD1 LINE L1 5364 5981 -261 1916 105 56 11 chr13 85542355 85542641 -16330528 - AluSx SINE Alu -13 299 1 1213 242 180 33 chr13 85542641 85542665 -16330504 + L1MD1 LINE L1 5981 6000 -242 23 0 0 0 chr13 85543025 85543048 -16330121 + AT_rich Low_complexity Low_complexity 1 23 0 303 221 137 0 chr13 85543805 85543900 -16329269 - MER20 DNA MER1_type -4 215 108 926 299 105 18 chr13 85546545 85546937 -16326232 + MLT1J2 LTR MaLR 21 446 -4 2013 110 0 13 chr13 85547418 85547719 -16325450 + AluSx SINE Alu 1 297 -15 370 284 138 60 chr13 85547974 85548206 -16324963 - MIR SINE MIR -10 252 3 208 253 0 67 chr13 85550572 85550647 -16322522 + GA-rich Low_complexity Low_complexity 6 75 0 336 297 77 39 chr13 85551793 85552103 -16321066 + L2 LINE L2 1436 1757 -1557 204 345 103 11 chr13 85552562 85552736 -16320433 + L2 LINE L2 2206 2395 -919 184 360 72 9 chr13 85552752 85552863 -16320306 + L2 LINE L2 3138 3255 -17 627 211 111 18 chr13 85553062 85553233 -16319936 - MER5A DNA MER1_type 0 189 3 370 244 219 75 chr13 85553429 85553909 -16319260 + MLT1H LTR MaLR 1 549 0 376 246 159 93 chr13 85554258 85554762 -16318407 + MLT1H LTR MaLR 5 541 -8 703 291 9 0 chr13 85556412 85556625 -16316544 - MIR SINE MIR -13 249 35 666 176 50 0 chr13 85557267 85557386 -16315783 + AluSq/x SINE Alu 1 125 -188 239 252 130 30 chr13 85559030 85559161 -16314008 - MER117 DNA MER1_type -44 153 10 376 259 19 0 chr13 85559645 85559753 -16313416 + L1MD2 LINE L1 5887 5996 -363 273 98 0 0 chr13 85560164 85560205 -16312964 + (CA)n Simple_repeat Simple_repeat 2 42 0 454 246 96 36 chr13 85562031 85562198 -16310971 + MER5B DNA MER1_type 2 178 0 2264 108 0 0 chr13 85562640 85562947 -16310222 + AluSx SINE Alu 1 307 -5 1392 201 43 49 chr13 85563275 85563465 -16309704 - MLT1A1 LTR MaLR -38 327 138 2083 147 121 0 chr13 85563465 85563845 -16309324 + MSTB LTR MaLR 1 426 0 1392 201 43 49 chr13 85563845 85563983 -16309186 - MLT1A1 LTR MaLR -227 138 1 1609 167 34 0 chr13 85564317 85564610 -16308559 + AluJo SINE Alu 1 303 -9 2539 40 0 0 chr13 85565065 85565361 -16307808 + AluY SINE Alu 1 296 -15 443 300 154 13 chr13 85565699 85565932 -16307237 + L2 LINE L2 3005 3270 -2 1357 227 26 3 chr13 85566901 85567205 -16305964 + L1MC1 LINE L1 6023 6333 0 2182 130 0 22 chr13 85567840 85568156 -16305013 + AluSx SINE Alu 1 309 -3 574 233 31 0 chr13 85568613 85568742 -16304427 + FLAM_C SINE Alu 10 142 -1 2380 109 0 0 chr13 85568793 85569105 -16304064 + AluSx SINE Alu 1 312 0 337 143 0 0 chr13 85569360 85569416 -16303753 + Alu SINE Alu 1 56 -246 1302 178 16 79 chr13 85569542 85569874 -16303295 + AluJo SINE Alu 1 313 0 1156 230 52 33 chr13 85569878 85570208 -16302961 + L1ME3A LINE L1 5816 6151 -19 2226 109 0 0 chr13 85570302 85570609 -16302560 - AluSx SINE Alu 0 307 1 350 241 1 0 chr13 85571152 85571265 -16301904 + L1 LINE L1 3675 3788 -2358 2508 82 0 0 chr13 85571267 85571571 -16301598 + AluSx SINE Alu 1 304 -8 2296 99 7 0 chr13 85571794 85572087 -16301082 + AluSx SINE Alu 1 295 -17 2190 113 0 0 chr13 85572167 85572449 -16300720 - AluSg SINE Alu -23 287 6 2431 71 0 0 chr13 85572684 85572979 -16300190 - AluY SINE Alu -16 295 1 503 285 154 28 chr13 85573056 85573730 -16299439 - L1M4 LINE L1 -2712 3434 2676 26 74 0 0 chr13 85573918 85573972 -16299197 + AT_rich Low_complexity Low_complexity 1 54 0 1738 193 135 7 chr13 85574105 85574228 -16298941 + L1MC4 LINE L1 6531 6637 -1405 237 65 0 0 chr13 85574228 85574259 -16298910 + (CA)n Simple_repeat Simple_repeat 1 31 0 1738 193 135 7 chr13 85574259 85574571 -16298598 + L1MC4 LINE L1 6637 7022 -1020 2211 119 0 3 chr13 85574817 85575111 -16298058 + AluSg SINE Alu 2 294 -16 980 215 0 11 chr13 85575416 85575583 -16297586 - AluJb SINE Alu -12 300 134 2125 120 31 0 chr13 85575583 85575874 -16297295 - AluSg SINE Alu -10 300 1 980 215 0 11 chr13 85575874 85575892 -16297277 - AluJb SINE Alu -178 134 117 1668 198 0 16 chr13 85576401 85576714 -16296455 + AluJo SINE Alu 1 308 -4 393 285 202 5 chr13 85576802 85576995 -16296174 - L3 LINE CR1 -42 1535 1305 1968 135 54 0 chr13 85577110 85577406 -16295763 - AluSx SINE Alu 0 312 1 2396 78 0 3 chr13 85577522 85577817 -16295352 + AluY SINE Alu 1 294 -17 2171 128 0 3 chr13 85578109 85578407 -16294762 + AluSq SINE Alu 1 297 -16 2323 92 3 3 chr13 85578827 85579120 -16294049 - AluSp SINE Alu -20 293 1 396 0 0 0 chr13 85579254 85579298 -16293871 + (CA)n Simple_repeat Simple_repeat 2 45 0 334 98 20 0 chr13 85579476 85579527 -16293642 + AluSp SINE Alu 97 148 -155 659 128 0 0 chr13 85579528 85579622 -16293547 + AluY SINE Alu 212 305 -6 34 55 0 0 chr13 85580571 85580626 -16292543 + AT_rich Low_complexity Low_complexity 1 55 0 208 328 30 0 chr13 85581087 85581154 -16292015 + MIR3 SINE MIR 98 166 -42 2323 81 0 33 chr13 85581190 85581497 -16291672 + AluSc SINE Alu 1 297 -12 2202 134 7 0 chr13 85581652 85581957 -16291212 - AluSx SINE Alu -5 307 1 2357 99 0 10 chr13 85582528 85582832 -16290337 + AluSg SINE Alu 3 303 -7 903 287 147 7 chr13 85583058 85583494 -16289675 + MLT1J LTR MaLR 15 511 0 1831 130 56 4 chr13 85583725 85584029 -16289140 + AluJb SINE Alu 1 318 0 267 209 116 16 chr13 85584032 85584161 -16289008 - L1ME LINE L1 -270 5851 5710 524 316 63 13 chr13 85584170 85584407 -16288762 + MIR SINE MIR 9 257 -5 309 373 41 7 chr13 85584513 85584689 -16288480 - MIR SINE MIR -67 141 16 1267 199 121 11 chr13 85584763 85584884 -16288285 + AluJo SINE Alu 6 112 -200 315 0 0 0 chr13 85584884 85584919 -16288250 + (TG)n Simple_repeat Simple_repeat 2 36 0 1267 199 121 11 chr13 85584919 85585069 -16288100 + AluJo SINE Alu 112 307 -5 457 316 43 32 chr13 85585229 85585416 -16287753 + MIR3 SINE MIR 11 199 -9 1864 183 0 3 chr13 85585551 85585851 -16287318 - AluJo SINE Alu -13 299 1 1794 174 0 14 chr13 85586060 85586354 -16286815 - AluJo SINE Alu -22 290 1 2417 96 3 0 chr13 85586427 85586728 -16286441 - AluSg SINE Alu -8 302 1 911 194 102 10 chr13 85587115 85587311 -16285858 + MER20 DNA MER1_type 3 216 -3 342 315 0 18 chr13 85589425 85589536 -16283633 + MER5A DNA MER1_type 73 181 -8 242 143 0 79 chr13 85589681 85589744 -16283425 + (TAAAAA)n Simple_repeat Simple_repeat 3 60 0 961 211 41 0 chr13 85589969 85590163 -16283006 - MIR SINE MIR -2 260 59 227 275 0 0 chr13 85590524 85590595 -16282574 + MIR SINE MIR 39 108 -119 264 247 65 13 chr13 85590621 85590698 -16282471 - MER5B DNA MER1_type -97 81 1 188 261 29 43 chr13 85591362 85591431 -16281738 + MIR SINE MIR 151 218 -44 1416 80 5 0 chr13 85591618 85591806 -16281363 + AluY SINE Alu 122 310 -1 2488 65 0 7 chr13 85591880 85592174 -16280995 - AluY SINE Alu -13 298 7 274 352 96 10 chr13 85592396 85592595 -16280574 + MLT1K LTR MaLR 174 389 -199 231 271 58 45 chr13 85593355 85593510 -16279659 + L2 LINE L2 2156 2312 -1002 277 362 104 48 chr13 85593962 85594374 -16278795 + L2 LINE L2 2806 3240 -32 1891 91 55 81 chr13 85595081 85595388 -16277781 + AluSp SINE Alu 1 299 -14 2431 124 25 0 chr13 85595405 85595760 -16277409 + THE1B LTR MaLR 1 364 0 661 137 23 76 chr13 85596059 85596190 -16276979 + FLAM_A SINE Alu 1 124 -9 317 230 200 0 chr13 85596216 85596316 -16276853 + MER46C DNA MER2_type 2 121 -217 2030 113 55 7 chr13 85596795 85597033 -16276136 + AluSx SINE Alu 1 257 -55 189 94 0 0 chr13 85597033 85597065 -16276104 + (CACTC)n Simple_repeat Simple_repeat 1 32 0 2030 113 55 7 chr13 85597065 85597117 -16276052 + AluSx SINE Alu 257 305 -7 1980 132 11 0 chr13 85597499 85597800 -16275369 + AluSx SINE Alu 1 304 0 2196 108 13 16 chr13 85597893 85598200 -16274969 + AluSx SINE Alu 1 306 -6 2329 102 0 10 chr13 85598831 85599145 -16274024 + AluY SINE Alu 1 311 0 2540 60 0 7 chr13 85599773 85600072 -16273097 + AluY SINE Alu 1 297 -14 687 208 0 8 chr13 85600961 85601086 -16272083 + FLAM_A SINE Alu 7 130 -12 463 260 97 39 chr13 85601366 85601520 -16271649 + MER5A DNA MER1_type 1 163 -26 2255 105 3 13 chr13 85601542 85601846 -16271323 + AluSq SINE Alu 1 301 -12 275 303 119 0 chr13 85602613 85602722 -16270447 + MIR SINE MIR 20 141 -121 296 262 134 74 chr13 85604041 85604236 -16268933 + HAL1 LINE L1 34 216 -2291 2215 109 10 0 chr13 85604236 85604529 -16268640 - AluSx SINE Alu -16 296 1 296 262 134 74 chr13 85604529 85604818 -16268351 + HAL1 LINE L1 216 547 -1960 2178 121 0 7 chr13 85604818 85605125 -16268044 + AluSx SINE Alu 1 305 -7 974 286 77 44 chr13 85605126 85605765 -16267404 + HAL1 LINE L1 1195 1854 -653 227 327 50 62 chr13 85605934 85606111 -16267058 + HAL1 LINE L1 2140 2313 -194 2296 103 0 7 chr13 85606111 85606412 -16266757 - AluSx SINE Alu -13 299 1 227 327 50 62 chr13 85606412 85606573 -16266596 + HAL1 LINE L1 2313 2474 -33 441 234 263 19 chr13 85609161 85609266 -16263903 - MER112 DNA MER1_type -5 255 177 994 102 267 5 chr13 85609266 85609453 -16263716 + MER46A DNA MER2_type 1 236 0 441 234 263 19 chr13 85609453 85609552 -16263617 - MER112 DNA MER1_type -83 177 1 220 283 106 27 chr13 85610050 85610206 -16262963 + MIR SINE MIR 26 187 -65 2187 104 0 3 chr13 85610308 85610597 -16262572 - AluSg SINE Alu -2 308 21 318 50 0 0 chr13 85611687 85611727 -16261442 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 0 0 0 chr13 85612997 85613022 -16260147 + GC_rich Low_complexity Low_complexity 1 25 0 48 91 0 0 chr13 85613117 85613249 -16259920 + GC_rich Low_complexity Low_complexity 1 132 0 24 53 0 0 chr13 85613400 85613438 -16259731 + GC_rich Low_complexity Low_complexity 1 38 0 538 273 108 27 chr13 85614542 85614875 -16258294 + L1ME4a LINE L1 5595 5954 -167 1630 147 11 0 chr13 85614888 85615154 -16258015 - Tigger3(Golem) DNA MER2_type -1 3028 2760 2231 147 13 35 chr13 85616763 85616976 -16256193 - MLT1B LTR MaLR -4 386 185 379 0 0 0 chr13 85616982 85617024 -16256145 + (TTTA)n Simple_repeat Simple_repeat 2 156 0 1950 108 47 7 chr13 85617024 85617294 -16255875 - AluSx SINE Alu -4 308 1 2231 147 13 35 chr13 85617294 85617475 -16255694 - MLT1B LTR MaLR -205 185 1 395 281 59 59 chr13 85618625 85618863 -16254306 - MLT1K LTR MaLR -2 586 349 1789 221 67 60 chr13 85619684 85619795 -16253374 - MER119 DNA MER1_type 0 583 474 2058 130 0 30 chr13 85619795 85620096 -16253073 + AluSx SINE Alu 1 292 -20 1789 221 67 60 chr13 85620096 85620563 -16252606 - MER119 DNA MER1_type -109 474 1 639 213 104 24 chr13 85620949 85621113 -16252056 - MER45A DNA AcHobo 0 178 2 877 206 0 0 chr13 85622001 85622147 -16251022 - FRAM SINE Alu -30 146 1 293 289 56 0 chr13 85622169 85622259 -16250910 - MLT1K LTR MaLR -7 581 487 434 332 37 12 chr13 85622311 85622552 -16250617 - MLT1K LTR MaLR -106 482 236 1052 230 14 5 chr13 85622800 85623022 -16250147 - MER58A DNA MER1_type 0 224 1 2195 113 10 10 chr13 85623535 85623846 -16249323 + AluSx SINE Alu 1 311 -1 772 161 0 8 chr13 85623846 85623964 -16249205 + AluJb SINE Alu 134 250 -62 1093 159 18 41 chr13 85623964 85624184 -16248985 + AluJo SINE Alu 85 299 -13 2099 131 3 6 chr13 85624205 85624518 -16248651 + AluSx SINE Alu 1 312 0 32 0 0 0 chr13 85625426 85625458 -16247711 + AT_rich Low_complexity Low_complexity 1 32 0 554 107 0 0 chr13 85625596 85625680 -16247489 - AluS SINE Alu -227 85 2 246 286 0 0 chr13 85625698 85625754 -16247415 + L1MEd LINE L1 598 653 -5466 625 117 0 0 chr13 85626067 85626161 -16247008 + AluY SINE Alu 218 311 0 229 26 26 26 chr13 85626195 85626234 -16246935 + (CAAAAA)n Simple_repeat Simple_repeat 2 40 0 2205 116 0 0 chr13 85626259 85626561 -16246608 + AluSx SINE Alu 1 302 -10 204 97 0 0 chr13 85626607 85626638 -16246531 + (TG)n Simple_repeat Simple_repeat 1 31 0 709 234 77 80 chr13 85626660 85626959 -16246210 + L1ME3A LINE L1 5864 6161 -9 1578 171 58 17 chr13 85626979 85627271 -16245898 + AluJb SINE Alu 1 304 -8 2219 108 0 13 chr13 85627408 85627723 -16245446 + AluSx SINE Alu 1 311 -1 184 316 226 16 chr13 85627794 85627984 -16245185 + L3b LINE CR1 1351 1580 -3 1192 294 95 25 chr13 85628140 85629012 -16244157 - L2 LINE L2 -3 3310 2371 2175 120 0 3 chr13 85629110 85629409 -16243760 - AluSx SINE Alu -14 298 1 1005 199 48 0 chr13 85629502 85629753 -16243416 - L1MB3 LINE L1 0 6183 5921 466 179 24 0 chr13 85630436 85630520 -16242649 + MER3 DNA MER1_type 5 90 -119 184 328 0 0 chr13 85630551 85630609 -16242560 - MIR3 SINE MIR -42 166 109 2317 112 3 3 chr13 85630617 85630930 -16242239 + AluSq SINE Alu 1 313 0 1583 133 84 39 chr13 85630938 85631224 -16241945 + AluJb SINE Alu 1 299 -13 779 310 124 55 chr13 85631898 85632044 -16241125 + L2 LINE L2 1073 1207 -2107 396 0 0 0 chr13 85632044 85632088 -16241081 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 735 175 0 0 chr13 85632093 85632219 -16240950 - FLAM_C SINE Alu -7 126 1 779 310 124 55 chr13 85632219 85632638 -16240531 + L2 LINE L2 1210 1599 -1715 2350 90 3 0 chr13 85632638 85632937 -16240232 + AluSg1 SINE Alu 1 300 -9 779 310 124 55 chr13 85632937 85633337 -16239832 + L2 LINE L2 1599 1970 -1344 2481 70 3 0 chr13 85633337 85633639 -16239530 - AluY SINE Alu -7 304 2 258 56 0 0 chr13 85633639 85633675 -16239494 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1963 133 3 7 chr13 85633675 85633960 -16239209 - AluSx SINE Alu -28 284 1 779 310 124 55 chr13 85633960 85634159 -16239010 + L2 LINE L2 1969 2328 -986 205 232 18 18 chr13 85634408 85634464 -16238705 + MER5A DNA MER1_type 15 70 -119 2156 127 0 0 chr13 85634471 85634785 -16238384 + AluSx SINE Alu 1 314 0 309 211 246 0 chr13 85634903 85635017 -16238152 + L2 LINE L2 2632 2773 -541 1776 178 11 0 chr13 85636033 85636320 -16236849 - AluJo SINE Alu -18 294 5 1320 210 3 26 chr13 85636472 85636782 -16236387 + L1MB8 LINE L1 5875 6177 -1 22 35 0 0 chr13 85636783 85636812 -16236357 + AT_rich Low_complexity Low_complexity 1 29 0 491 223 10 96 chr13 85636871 85637068 -16236101 - HAL1 LINE L1 -181 2326 2147 2387 255 33 36 chr13 85637068 85637832 -16235337 + L2 LINE L2 2226 2990 -323 2345 100 0 0 chr13 85637832 85638131 -16235038 - AluSx SINE Alu -13 299 1 2387 255 33 36 chr13 85638131 85638324 -16234845 + L2 LINE L2 2990 3182 -131 2892 114 35 58 chr13 85638329 85638503 -16234666 + HSMAR2 DNA Mariner 1 178 -1124 3034 63 5 2 chr13 85638503 85638934 -16234235 + L1PA5 LINE L1 5760 6154 0 2892 114 35 58 chr13 85638934 85639181 -16233988 + HSMAR2 DNA Mariner 178 410 -892 2174 119 3 3 chr13 85639181 85639492 -16233677 + AluY SINE Alu 1 311 0 2892 114 35 58 chr13 85639492 85639586 -16233583 + HSMAR2 DNA Mariner 410 505 -797 1906 244 23 53 chr13 85639586 85640024 -16233145 - L1MC4 LINE L1 -971 7071 6652 2048 138 0 3 chr13 85640024 85640320 -16232849 - AluSx SINE Alu -17 295 1 1906 244 23 53 chr13 85640320 85640442 -16232727 - L1MC4 LINE L1 -1390 6652 6528 236 172 0 0 chr13 85640435 85640493 -16232676 - L1MC4 LINE L1 -1339 6703 6646 * 615 217 85 35 chr13 85640524 85640782 -16232387 + L1M4 LINE L1 4877 5147 -999 315 203 54 0 chr13 85640787 85640861 -16232308 - MLT1A2 LTR MaLR -240 134 57 279 190 0 0 chr13 85640981 85641039 -16232130 + G-rich Low_complexity Low_complexity 5 62 0 1550 246 16 11 chr13 85641048 85641422 -16231747 + HsTC2c DNA Tc2 351 726 -3 313 309 45 9 chr13 85641427 85641537 -16231632 - MIR SINE MIR -117 145 32 2091 135 3 10 chr13 85641861 85642028 -16231141 - AluSx SINE Alu -11 301 135 2304 117 0 0 chr13 85642028 85642328 -16230841 - AluSg SINE Alu -10 300 1 2091 135 3 10 chr13 85642328 85642463 -16230706 - AluSx SINE Alu -177 135 1 201 74 0 0 chr13 85642682 85642709 -16230460 + (T)n Simple_repeat Simple_repeat 1 27 0 1890 161 23 0 chr13 85642741 85643046 -16230123 - AluJo SINE Alu 0 312 1 343 124 18 62 chr13 85643252 85643330 -16229839 + AluS SINE Alu 231 289 -12 2266 106 0 7 chr13 85643435 85643737 -16229432 - AluY SINE Alu -11 300 1 2193 101 7 0 chr13 85644543 85644830 -16228339 - AluSx SINE Alu 0 312 24 2360 100 0 0 chr13 85645050 85645349 -16227820 - AluSx SINE Alu -13 299 1 2072 116 49 0 chr13 85645349 85645633 -16227536 - AluSx SINE Alu -14 298 1 212 319 106 54 chr13 85645749 85645858 -16227311 + L2 LINE L2 2272 2374 -940 2363 86 10 0 chr13 85645858 85646160 -16227009 - AluY SINE Alu -6 305 1 212 319 106 54 chr13 85646160 85646552 -16226617 + L2 LINE L2 2374 2799 -515 1613 135 62 56 chr13 85646797 85647101 -16226068 - AluJo SINE Alu -6 306 1 2381 63 0 33 chr13 85647112 85647411 -16225758 - AluY SINE Alu -22 289 1 477 279 29 0 chr13 85647486 85647622 -16225547 - MIR SINE MIR -74 188 49 27 0 0 0 chr13 85647857 85647884 -16225285 + AT_rich Low_complexity Low_complexity 1 27 0 2076 102 7 14 chr13 85648067 85648389 -16224780 - AluSx SINE Alu 0 320 1 1245 244 189 55 chr13 85648391 85648993 -16224176 - L1MC4a LINE L1 -1872 5936 5260 2828 229 72 34 chr13 85649101 85649545 -16223624 - L1ME1 LINE L1 -1 6165 5739 2193 105 13 16 chr13 85649545 85649851 -16223318 + AluSx SINE Alu 1 305 -7 2828 229 72 34 chr13 85649851 85650995 -16222174 - L1ME1 LINE L1 -427 5739 4523 569 184 20 0 chr13 85650995 85651093 -16222076 - AluJb SINE Alu -25 287 188 791 239 34 44 chr13 85651420 85651713 -16221456 - L1ME1 LINE L1 -1741 4405 4116 2377 115 0 0 chr13 85651784 85652096 -16221073 - AluSx SINE Alu 0 312 1 1591 127 16 0 chr13 85652098 85652351 -16220818 - L1PA13 LINE L1 -4 6159 5903 2180 112 0 16 chr13 85652518 85652822 -16220347 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr13 85652944 85652972 -16220197 + AT_rich Low_complexity Low_complexity 1 28 0 2187 126 0 0 chr13 85653073 85653367 -16219802 - AluSx SINE Alu -18 294 1 1191 280 37 5 chr13 85653460 85653842 -16219327 + L1ME LINE L1 5372 5765 -405 1550 178 21 14 chr13 85653842 85654129 -16219040 + AluJo SINE Alu 1 289 -23 468 0 0 0 chr13 85654135 85654187 -16218982 + (CA)n Simple_repeat Simple_repeat 2 53 0 777 132 0 22 chr13 85654754 85654890 -16218279 + FLAM_A SINE Alu 10 142 0 2410 60 0 0 chr13 85654890 85655175 -16217994 + AluSg SINE Alu 1 285 -25 228 86 0 0 chr13 85655184 85655219 -16217950 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 250 290 0 0 chr13 85655498 85655560 -16217609 + (CA)n Simple_repeat Simple_repeat 1 62 0 987 202 27 5 chr13 85656305 85656528 -16216641 - L1MC4a LINE L1 -1263 4883 4656 1777 21 0 0 chr13 85656528 85656721 -16216448 - AluY SINE Alu -11 300 108 337 160 11 117 chr13 85656823 85656866 -16216303 - L1MC4a LINE L1 -1473 4673 4644 1894 123 16 52 chr13 85656866 85657176 -16215993 + AluSx SINE Alu 1 299 -13 337 160 11 117 chr13 85657176 85657226 -16215943 - L1MC4a LINE L1 -1502 4644 4590 2341 114 0 0 chr13 85657679 85657978 -16215191 + AluSx SINE Alu 1 299 -13 1989 123 17 10 chr13 85658149 85658549 -16214620 - AluSq SINE Alu 0 402 1 204 300 223 23 chr13 85659327 85659457 -16213712 - L2 LINE L2 0 3272 3117 255 231 0 0 chr13 85659472 85659524 -16213645 + HsTC2 DNA Tc2 31 82 -1816 649 279 64 19 chr13 85659662 85659927 -16213242 - LTR16C LTR ERVL 0 491 215 1149 135 6 0 chr13 85660091 85660247 -16212922 + AluSx SINE Alu 1 157 -155 568 266 124 23 chr13 85660378 85660725 -16212444 - L1 LINE L1 -3121 3025 2651 28 79 0 0 chr13 85660880 85660943 -16212226 + AT_rich Low_complexity Low_complexity 1 63 0 2078 136 3 3 chr13 85661132 85661427 -16211742 + AluSx SINE Alu 1 295 -17 384 332 21 16 chr13 85661578 85661765 -16211404 + MIR SINE MIR 74 261 -1 245 151 0 68 chr13 85662023 85662096 -16211073 - L1ME4a LINE L1 -7 6114 6047 2171 128 0 10 chr13 85662324 85662628 -16210541 + AluSg SINE Alu 3 303 -7 2195 109 3 13 chr13 85663412 85663716 -16209453 - AluSq SINE Alu -12 301 1 392 260 97 39 chr13 85663738 85663892 -16209277 - MER5A DNA MER1_type -26 163 1 666 205 0 8 chr13 85664175 85664297 -16208872 - FLAM_A SINE Alu -15 127 7 2230 106 0 10 chr13 85665186 85665487 -16207682 - AluSx SINE Alu -14 298 1 2130 244 38 79 chr13 85665580 85665962 -16207207 + L1ME3A LINE L1 5372 5768 -402 1701 174 10 7 chr13 85665962 85666250 -16206919 + AluJo SINE Alu 1 289 -23 360 77 0 0 chr13 85666256 85666308 -16206861 + (CA)n Simple_repeat Simple_repeat 2 53 0 2130 244 38 79 chr13 85666308 85666395 -16206774 + L1ME3A LINE L1 5773 5862 -308 1476 174 4 26 chr13 85666395 85666507 -16206662 + AluJo SINE Alu 27 140 -173 1946 143 38 0 chr13 85666507 85666794 -16206375 + AluSx SINE Alu 1 298 -14 1476 174 4 26 chr13 85666794 85666974 -16206195 + AluJo SINE Alu 140 313 0 2130 244 38 79 chr13 85666974 85667308 -16205861 + L1ME3A LINE L1 5862 6151 -19 217 0 0 0 chr13 85667402 85667426 -16205743 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2181 102 0 7 chr13 85667426 85667711 -16205458 - AluSx SINE Alu -29 283 1 253 300 223 23 chr13 85668489 85668619 -16204550 - L2 LINE L2 0 3272 3117 248 231 0 0 chr13 85668634 85668686 -16204483 + HsTC2 DNA Tc2 31 82 -1816 669 279 64 19 chr13 85668824 85669089 -16204080 - LTR16C LTR ERVL 0 491 215 2165 121 3 0 chr13 85669253 85669560 -16203609 + AluSx SINE Alu 1 308 -4 1202 181 8 53 chr13 85669596 85669825 -16203344 + L1ME3 LINE L1 5691 5908 -254 1760 154 20 20 chr13 85669825 85670124 -16203045 - AluJo SINE Alu -13 299 1 1202 181 8 53 chr13 85670124 85670160 -16203009 + L1ME3 LINE L1 5908 5944 -218 347 88 0 18 chr13 85670369 85670426 -16202743 + (CA)n Simple_repeat Simple_repeat 2 57 0 2181 106 0 0 chr13 85670470 85670773 -16202396 + AluSx SINE Alu 1 303 -9 728 225 25 6 chr13 85671160 85671320 -16201849 - MER5A DNA MER1_type -25 164 2 252 0 0 0 chr13 85671551 85671579 -16201590 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2026 102 21 0 chr13 85671603 85671887 -16201282 - AluSg SINE Alu -15 295 6 778 132 0 22 chr13 85671891 85672027 -16201142 - FLAM_A SINE Alu 0 142 10 2157 97 3 16 chr13 85672642 85672775 -16200394 + AluSg SINE Alu 1 134 -176 2167 121 0 0 chr13 85672775 85673088 -16200081 + AluSq SINE Alu 1 313 0 2157 97 3 16 chr13 85673088 85673263 -16199906 + AluSg SINE Alu 134 305 -5 2050 119 0 25 chr13 85674293 85674611 -16198558 + AluSx SINE Alu 3 312 0 2344 110 27 0 chr13 85674707 85675035 -16198134 - MER1B DNA MER1_type 0 337 1 1694 169 3 3 chr13 85675400 85675690 -16197479 - AluJb SINE Alu -9 303 14 1896 232 107 8 chr13 85676268 85676773 -16196396 - MER89 LTR ERV1 -4 555 1 2083 106 7 7 chr13 85676814 85677117 -16196052 + AluY SINE Alu 1 303 -8 590 175 21 35 chr13 85678040 85678183 -16194986 - MER67C LTR ERV1 0 710 570 873 190 154 71 chr13 85678197 85678390 -16194779 - MER67C LTR ERV1 -367 343 113 2320 94 0 7 chr13 85678390 85678697 -16194472 + AluSx SINE Alu 1 305 -7 873 190 154 71 chr13 85678697 85678814 -16194355 - MER67C LTR ERV1 -597 113 7 445 134 0 0 chr13 85679067 85679134 -16194035 - MER41A LTR ERV1 0 554 488 435 129 0 43 chr13 85679141 85679246 -16193923 + AluSc SINE Alu 214 315 0 575 130 11 11 chr13 85679249 85679341 -16193828 - MER41C LTR ERV1 -121 433 342 306 234 0 93 chr13 85679342 85679449 -16193720 + L1MC4 LINE L1 6607 6703 -1339 375 229 25 0 chr13 85679454 85679572 -16193597 + (TA)n Simple_repeat Simple_repeat 1 121 0 2158 129 44 0 chr13 85679574 85679914 -16193255 - MER41C LTR ERV1 -199 355 1 199 343 0 14 chr13 85680445 85680518 -16192651 - L2 LINE L2 -1 3312 3241 1783 101 8 8 chr13 85682536 85682794 -16190375 + AluSq SINE Alu 1 258 -55 180 152 0 0 chr13 85682889 85682922 -16190247 + CT-rich Low_complexity Low_complexity 1 33 0 1618 217 58 92 chr13 85682924 85683020 -16190149 - L1MC4 LINE L1 -205 7837 7739 2155 113 0 0 chr13 85683020 85683320 -16189849 + AluSg SINE Alu 3 302 -8 1618 217 58 92 chr13 85683320 85683827 -16189342 - L1MC4 LINE L1 -303 7739 7253 1776 135 56 126 chr13 85683827 85684271 -16188898 - MLT2D LTR ERVL 0 414 2 1618 217 58 92 chr13 85684271 85684288 -16188881 - L1MC4 LINE L1 -789 7253 7237 286 302 52 44 chr13 85684359 85684611 -16188558 - L1 LINE L1 -1131 5015 4762 1283 252 111 14 chr13 85684626 85685039 -16188130 + LTR40b LTR ERVL 8 460 -2 1610 123 9 0 chr13 85686327 85686554 -16186615 + MER4A LTR ERV1 436 664 0 1004 66 7 0 chr13 85686555 85686691 -16186478 - L1P4 LINE L1 -376 5787 5651 2325 246 60 49 chr13 85686696 85687025 -16186144 + HAL1 LINE L1 816 1140 -1367 2213 84 7 19 chr13 85687025 85687333 -16185836 + AluSx SINE Alu 1 304 -8 2325 246 60 49 chr13 85687333 85687733 -16185436 + HAL1 LINE L1 1140 1561 -946 1977 159 0 0 chr13 85687733 85688041 -16185128 + 7SLRNA srpRNA srpRNA 2 309 -11 2325 246 60 49 chr13 85688041 85688285 -16184884 + HAL1 LINE L1 1561 1801 -706 300 186 17 0 chr13 85688564 85688623 -16184546 + L2 LINE L2 3254 3313 0 362 250 110 30 chr13 85689284 85689384 -16183785 + L2 LINE L2 3197 3304 -9 186 226 132 0 chr13 85689409 85689462 -16183707 - MIR SINE MIR -20 242 183 271 225 350 0 chr13 85689462 85689542 -16183627 - MER81 DNA DNA 0 114 7 435 250 78 57 chr13 85689549 85689741 -16183428 - MIR SINE MIR -66 196 1 655 224 72 20 chr13 85690154 85690349 -16182820 + MIR SINE MIR 15 219 -37 746 233 165 37 chr13 85690371 85690544 -16182625 + L2 LINE L2 2474 2623 -691 1766 148 6 28 chr13 85690544 85690861 -16182308 - AluJo SINE Alu 0 312 3 746 233 165 37 chr13 85690861 85691069 -16182100 + L2 LINE L2 2623 2904 -410 418 282 136 69 chr13 85691100 85691565 -16181604 + L2 LINE L2 2812 3307 -6 222 284 156 18 chr13 85691615 85691724 -16181445 - MIR SINE MIR -80 182 59 243 103 0 0 chr13 85692074 85692113 -16181056 + (CACG)n Simple_repeat Simple_repeat 1 39 0 2149 114 0 0 chr13 85692493 85692800 -16180369 - AluSq SINE Alu -6 307 1 2546 154 29 0 chr13 85692905 85693314 -16179855 + MSTB LTR MaLR 1 421 -5 443 156 10 10 chr13 85693834 85693930 -16179239 + L1MB3 LINE L1 5986 6081 -102 * 619 186 8 8 chr13 85693927 85694056 -16179113 + L1MB3 LINE L1 6046 6174 -9 2057 99 10 3 chr13 85694056 85694348 -16178821 - AluSq SINE Alu -19 294 1 21 0 0 0 chr13 85694359 85694380 -16178789 + AT_rich Low_complexity Low_complexity 1 21 0 617 286 25 15 chr13 85694944 85695143 -16178026 + MIR SINE MIR 1 201 -61 478 285 23 52 chr13 85695219 85695391 -16177778 + MIR SINE MIR 86 252 -10 2084 89 0 57 chr13 85695435 85695750 -16177419 + AluSq SINE Alu 1 297 -16 1639 174 31 0 chr13 85695757 85696050 -16177119 + AluJb SINE Alu 1 302 -10 2182 111 0 0 chr13 85696226 85696523 -16176646 + AluSx SINE Alu 1 297 -15 203 128 154 0 chr13 85697172 85697211 -16175958 - L2 LINE L2 -5 3267 3223 2287 87 3 3 chr13 85697229 85697539 -16175630 - AluSx SINE Alu -2 310 1 197 265 96 36 chr13 85697577 85697660 -16175509 - MIR SINE MIR -111 151 64 1475 163 94 14 chr13 85697665 85697953 -16175216 + AluJo SINE Alu 1 311 -1 736 113 23 34 chr13 85698799 85698922 -16174247 + (TCTA)n Simple_repeat Simple_repeat 1 124 -437 2372 80 0 0 chr13 85698922 85699224 -16173945 - AluY SINE Alu -9 302 1 736 113 23 34 chr13 85699224 85699367 -16173802 + (TCTA)n Simple_repeat Simple_repeat 124 561 0 195 42 0 0 chr13 85699389 85699413 -16173756 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 2244 90 10 0 chr13 85699991 85700301 -16172868 + AluSq SINE Alu 1 313 0 2072 118 16 0 chr13 85701434 85701738 -16171431 + AluSc SINE Alu 1 309 0 1117 148 21 0 chr13 85702660 85702849 -16170320 - AluJo SINE Alu 0 312 120 21 0 0 0 chr13 85702849 85702870 -16170299 + AT_rich Low_complexity Low_complexity 1 21 0 2129 111 0 0 chr13 85704666 85704964 -16168205 - AluSx SINE Alu -14 298 1 1593 168 0 24 chr13 85705170 85705462 -16167707 - AluJo SINE Alu -15 297 13 1099 228 8 4 chr13 85706342 85706588 -16166581 - Tigger3(Golem) DNA MER2_type 0 3029 2783 2909 173 62 44 chr13 85706590 85706770 -16166399 - L1MB8 LINE L1 -172 6006 5831 1997 106 20 7 chr13 85706770 85707063 -16166106 - AluY SINE Alu -14 297 1 2909 173 62 44 chr13 85707063 85707225 -16165944 - L1MB8 LINE L1 -347 5831 5673 2162 159 114 57 chr13 85707225 85707516 -16165653 + LTR44 LTR ERV1 1 274 -245 2351 83 3 0 chr13 85707516 85707818 -16165351 + AluSp SINE Alu 1 303 -10 2162 159 114 57 chr13 85707818 85707866 -16165303 + LTR44 LTR ERV1 274 318 -201 1930 158 0 16 chr13 85707866 85708183 -16164986 - AluJo SINE Alu 0 312 1 2162 159 114 57 chr13 85708183 85708333 -16164836 + LTR44 LTR ERV1 318 519 0 2909 173 62 44 chr13 85708333 85708462 -16164707 - L1MB8 LINE L1 -505 5673 5548 1635 166 30 7 chr13 85708462 85708763 -16164406 - AluJb SINE Alu -4 308 1 2909 173 62 44 chr13 85708763 85708812 -16164357 - L1MB8 LINE L1 -630 5548 5501 2379 87 0 0 chr13 85708812 85709122 -16164047 - AluSq SINE Alu -3 310 1 2909 173 62 44 chr13 85709122 85709491 -16163678 - L1MB8 LINE L1 -677 5501 5103 446 196 62 18 chr13 85709521 85709633 -16163536 + MER4A LTR ERV1 1 117 -547 444 134 144 0 chr13 85709747 85709844 -16163325 - L1MB8 LINE L1 -1133 5013 4903 659 192 78 39 chr13 85709915 85710289 -16162880 + Charlie7 DNA MER1_type 2192 2612 0 322 274 77 31 chr13 85710289 85710469 -16162700 + L1ME1 LINE L1 5649 5833 -337 2010 101 27 17 chr13 85710469 85710766 -16162403 + AluSc SINE Alu 1 300 -9 322 274 77 31 chr13 85710766 85710809 -16162360 + L1ME1 LINE L1 5833 5873 -297 772 192 0 0 chr13 85710981 85711106 -16162063 - FLAM_A SINE Alu -4 129 5 2005 112 10 13 chr13 85711114 85711417 -16161752 - AluSx SINE Alu -10 302 1 2179 110 3 0 chr13 85711856 85712165 -16161004 + AluSx SINE Alu 1 310 -2 1759 202 24 40 chr13 85712462 85712773 -16160396 + MLT1B LTR MaLR 7 313 -77 2035 103 0 0 chr13 85712773 85713077 -16160092 - AluSg SINE Alu 0 304 1 1759 202 24 40 chr13 85713077 85713141 -16160028 + MLT1B LTR MaLR 313 377 -13 189 0 0 0 chr13 85713339 85713360 -16159809 + (T)n Simple_repeat Simple_repeat 1 21 0 268 321 187 8 chr13 85713375 85713621 -16159548 + HAL1 LINE L1 1547 1836 -671 1976 119 16 16 chr13 85714149 85714460 -16158709 - AluSx SINE Alu -1 311 1 465 280 126 21 chr13 85714678 85714917 -16158252 - L1ME1 LINE L1 0 6166 5903 2243 204 98 21 chr13 85715122 85715682 -16157487 - L1ME1 LINE L1 -261 5905 5303 21 0 0 0 chr13 85715682 85715703 -16157466 + AT_rich Low_complexity Low_complexity 1 21 0 323 194 30 15 chr13 85715716 85715783 -16157386 + L1ME1 LINE L1 5867 5934 -232 * 2911 185 53 184 chr13 85715760 85715934 -16157235 - L1ME1 LINE L1 -844 5302 5107 1976 138 7 0 chr13 85715934 85716231 -16156938 + AluJo SINE Alu 7 305 -7 2911 185 53 184 chr13 85716231 85717233 -16155936 - L1ME1 LINE L1 -1039 5107 3976 947 171 0 6 chr13 85717233 85717391 -16155778 - AluJb SINE Alu -22 290 134 2039 124 0 13 chr13 85717391 85717698 -16155471 - AluSx SINE Alu -9 303 1 2911 185 53 184 chr13 85717698 85718139 -16155030 - L1ME1 LINE L1 -2168 3978 3757 1568 170 25 62 chr13 85718397 85718721 -16154448 + AluJb SINE Alu 1 312 0 476 206 135 24 chr13 85718740 85718866 -16154303 + FLAM_C SINE Alu 2 141 -2 351 198 10 20 chr13 85718888 85718989 -16154180 + GA-rich Low_complexity Low_complexity 2 101 0 1413 145 0 8 chr13 85719268 85719502 -16153667 - AluJo SINE Alu 0 312 81 24 0 0 0 chr13 85719664 85719688 -16153481 + AT_rich Low_complexity Low_complexity 1 24 0 1972 148 0 0 chr13 85720640 85720943 -16152226 + AluSx SINE Alu 1 303 -9 403 193 24 12 chr13 85720944 85721027 -16152142 + MER5B DNA MER1_type 93 176 -2 805 183 156 0 chr13 85721053 85721239 -16151930 - MER20 DNA MER1_type 0 219 5 279 228 228 31 chr13 85721247 85721333 -16151836 + MER5A DNA MER1_type 17 85 -104 2080 122 0 10 chr13 85721333 85721636 -16151533 + AluSx SINE Alu 1 300 -12 279 228 228 31 chr13 85721636 85721676 -16151493 + MER5A DNA MER1_type 85 168 -21 2145 135 33 30 chr13 85722172 85722534 -16150635 + THE1B LTR MaLR 1 363 -1 2467 152 27 31 chr13 85722917 85723350 -16149819 + L1MB2 LINE L1 5687 6119 -52 1629 129 75 20 chr13 85723350 85723645 -16149524 + AluJo SINE Alu 1 311 -1 2467 152 27 31 chr13 85723645 85723692 -16149477 + L1MB2 LINE L1 6119 6165 -6 480 75 15 0 chr13 85723720 85723787 -16149382 + MER41B LTR ERV1 480 547 -88 183 162 0 0 chr13 85723832 85723869 -16149300 + GA-rich Low_complexity Low_complexity 1 37 0 2091 120 0 3 chr13 85724691 85724992 -16148177 - AluSx SINE Alu -12 300 1 1890 142 26 3 chr13 85726257 85726560 -16146609 + AluSx SINE Alu 1 310 -2 228 35 0 0 chr13 85727385 85727414 -16145755 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1303 177 76 43 chr13 85728548 85728777 -16144392 - Charlie5 DNA MER1_type -1 2623 2376 1494 204 13 16 chr13 85728777 85729081 -16144088 - AluJb SINE Alu -9 303 1 1303 177 76 43 chr13 85729081 85729219 -16143950 - Charlie5 DNA MER1_type -248 2376 2244 2066 139 0 19 chr13 85729488 85729804 -16143365 + AluSx SINE Alu 1 310 -2 194 139 56 28 chr13 85730069 85730123 -16143046 + (CAATA)n Simple_repeat Simple_repeat 2 60 -15 1927 105 11 0 chr13 85730123 85730400 -16142769 + AluSx SINE Alu 26 305 -7 194 139 56 28 chr13 85730400 85730417 -16142752 + (CAATA)n Simple_repeat Simple_repeat 60 75 0 456 318 68 25 chr13 85730706 85730890 -16142279 - L1ME4a LINE L1 -263 5858 5656 2073 118 7 0 chr13 85730890 85731196 -16141973 - AluSx SINE Alu -4 308 1 456 318 68 25 chr13 85731196 85731291 -16141878 - L1ME4a LINE L1 -465 5656 5567 304 282 97 0 chr13 85731355 85731458 -16141711 - L1ME4a LINE L1 -689 5432 5320 2125 121 0 0 chr13 85732063 85732368 -16140801 + AluSx SINE Alu 1 305 -7 779 178 0 0 chr13 85732626 85732744 -16140425 + FLAM_C SINE Alu 1 118 -15 27 0 0 0 chr13 85732749 85732776 -16140393 + AT_rich Low_complexity Low_complexity 1 27 0 184 344 33 0 chr13 85733213 85733274 -16139895 + MIR SINE MIR 175 237 -25 597 76 0 0 chr13 85733789 85733868 -16139301 + MADE1 DNA Mariner 2 80 0 1091 171 0 0 chr13 85734031 85734212 -16138957 - AluJ SINE Alu 0 312 132 1778 131 29 0 chr13 85734258 85734532 -16138637 + AluSq SINE Alu 1 282 -31 660 168 0 70 chr13 85734533 85734676 -16138493 - AluJ SINE Alu -169 133 1 687 196 38 0 chr13 85735454 85735587 -16137582 - MER58B DNA MER1_type 0 341 204 45 0 0 0 chr13 85735671 85735716 -16137453 + AT_rich Low_complexity Low_complexity 1 45 0 429 170 21 0 chr13 85735966 85736060 -16137109 + LTR37A LTR ERV1 331 426 0 2127 104 0 7 chr13 85736492 85736800 -16136369 + AluY SINE Alu 1 306 -5 288 193 114 0 chr13 85738087 85738175 -16134994 + L1ME4a LINE L1 5968 6065 -56 857 206 201 10 chr13 85738611 85738820 -16134349 - MIR SINE MIR -3 259 11 301 231 51 0 chr13 85738813 85738891 -16134278 - MIR SINE MIR -63 145 64 * 1888 143 3 3 chr13 85739945 85740238 -16132931 + AluJo SINE Alu 1 293 -19 1646 81 0 9 chr13 85740274 85740496 -16132673 - AluY SINE Alu -91 220 1 2214 146 93 5 chr13 85740618 85741015 -16132154 + MSTB1 LTR MaLR 1 432 0 224 273 0 18 chr13 85741362 85741417 -16131752 - L2 LINE L2 -34 3279 3226 1515 168 69 10 chr13 85741440 85741731 -16131438 - AluJb SINE Alu -4 308 1 407 184 53 61 chr13 85742710 85742824 -16130345 - MER5B DNA MER1_type -62 116 4 183 284 74 25 chr13 85742919 85743000 -16130169 + MIR SINE MIR 160 244 -18 781 228 27 5 chr13 85743634 85743818 -16129351 - MER5A DNA MER1_type 0 189 2 1470 155 67 0 chr13 85743838 85744122 -16129047 - L1 LINE L1 -1245 4901 4599 * 2191 113 14 82 chr13 85744116 85744422 -16128747 + L1MA4 LINE L1 5827 6098 -202 2206 110 10 0 chr13 85744422 85744730 -16128439 + AluSx SINE Alu 1 311 -1 2191 113 14 82 chr13 85744730 85744848 -16128321 + L1MA4 LINE L1 6098 6222 -78 23 33 0 0 chr13 85744852 85744882 -16128287 + AT_rich Low_complexity Low_complexity 1 30 0 287 208 26 0 chr13 85744917 85744994 -16128175 + L1MA2 LINE L1 6222 6300 -4 421 197 13 0 chr13 85745129 85745205 -16127964 - MER5A DNA MER1_type -110 79 3 1782 83 37 0 chr13 85745692 85745933 -16127236 + AluSx SINE Alu 47 296 -16 227 30 0 30 chr13 85745933 85745966 -16127203 + (GGGAA)n Simple_repeat Simple_repeat 2 33 0 225 192 19 19 chr13 85746076 85746128 -16127041 + GA-rich Low_complexity Low_complexity 3 54 0 314 70 0 70 chr13 85746129 85746200 -16126969 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 421 318 123 8 chr13 85746808 85747060 -16126109 + LTR33 LTR ERVL 131 411 -110 1942 196 139 5 chr13 85748744 85749189 -16123980 + MLT1D LTR MaLR 1 505 0 315 280 59 34 chr13 85749576 85749694 -16123475 + MIR SINE MIR 16 136 -72 1007 140 105 15 chr13 85749695 85749858 -16123311 + MSTB LTR MaLR 2 172 -254 2139 119 3 0 chr13 85749858 85750160 -16123009 - AluSx SINE Alu -9 303 1 1007 140 105 15 chr13 85750160 85750192 -16122977 + MSTB LTR MaLR 172 200 -226 1683 170 33 26 chr13 85750209 85750515 -16122654 + L1P3 LINE L1 10 317 -6144 16423 57 0 3 chr13 85750515 85753400 -16119769 + L1PA6 LINE L1 3272 6151 -3 1350 133 80 0 chr13 85753405 85753630 -16119539 + MSTB LTR MaLR 184 426 0 10258 160 13 2 chr13 85753630 85755258 -16117911 + MSTA-int LTR MaLR 1 1646 -5 2458 147 51 5 chr13 85755261 85755670 -16117499 + MSTA LTR MaLR 1 428 0 977 111 0 0 chr13 85757229 85757364 -16115805 + AluSq/x SINE Alu 4 138 -175 1801 124 44 0 chr13 85757366 85757640 -16115529 + AluSx SINE Alu 18 303 -9 542 229 53 20 chr13 85757919 85758168 -16115001 + REP3 LTR ERV 26 335 -227 1952 199 31 52 chr13 85758375 85758666 -16114503 - MLT1C LTR MaLR 0 467 188 1766 165 7 0 chr13 85758666 85758969 -16114200 - AluJo SINE Alu -7 305 1 1952 199 31 52 chr13 85758969 85759154 -16114015 - MLT1C LTR MaLR -279 188 1 1524 131 0 4 chr13 85759933 85760162 -16113007 + AluJb SINE Alu 81 308 -4 333 0 0 115 chr13 85760347 85760364 -16112805 - MADE1 DNA Mariner -34 46 29 2298 89 0 0 chr13 85760364 85760668 -16112501 + AluSg SINE Alu 1 304 -6 333 0 0 115 chr13 85760668 85760702 -16112467 - MADE1 DNA Mariner -51 29 1 1522 228 102 15 chr13 85761298 85761710 -16111459 + MLT1C LTR MaLR 20 467 0 3714 141 43 3 chr13 85761778 85762402 -16110767 - L1PA13 LINE L1 -7 6156 5508 2081 121 3 0 chr13 85763494 85763801 -16109368 + AluSx SINE Alu 1 308 -4 1625 180 6 13 chr13 85764179 85764490 -16108679 - AluJb SINE Alu -3 309 1 528 231 66 39 chr13 85764699 85764881 -16108288 + MER5A DNA MER1_type 3 189 0 1152 226 78 19 chr13 85765609 85765928 -16107241 + MER58B DNA MER1_type 4 341 0 2258 75 0 7 chr13 85766012 85766306 -16106863 - AluSc SINE Alu -17 292 1 2111 106 0 10 chr13 85766647 85766950 -16106219 - AluSx SINE Alu -12 300 1 622 240 7 0 chr13 85768747 85768897 -16104272 - MER5A DNA MER1_type -38 151 1 389 206 11 11 chr13 85768954 85769134 -16104035 + (TG)n Simple_repeat Simple_repeat 1 180 0 7120 66 0 2 chr13 85769213 85770883 -16102286 + L1PA6 LINE L1 4487 6154 0 1612 204 22 0 chr13 85771055 85771418 -16101751 - L1MB3 LINE L1 -57 6126 5756 793 146 15 0 chr13 85771874 85772004 -16101165 + MER5A DNA MER1_type 1 132 -57 292 275 33 50 chr13 85772051 85772171 -16100998 - L2 LINE L2 -2 3270 3153 2571 132 48 62 chr13 85772349 85772966 -16100203 + MER4B LTR ERV1 1 779 0 1037 235 77 34 chr13 85773016 85773395 -16099774 - MLT1C LTR MaLR -2 465 71 24 32 0 0 chr13 85774378 85774409 -16098760 + AT_rich Low_complexity Low_complexity 1 31 0 611 146 20 23 chr13 85774449 85774695 -16098474 + AluJ SINE Alu 1 306 -6 2287 112 0 55 chr13 85775000 85775330 -16097839 - AluSx SINE Alu 0 312 1 1318 182 33 55 chr13 85775417 85775746 -16097423 - MLT1D LTR MaLR -1 504 183 1913 154 149 69 chr13 85775751 85775932 -16097237 + LTR61 LTR ERV1 1 166 -429 2514 77 0 3 chr13 85775932 85776243 -16096926 + AluY SINE Alu 2 311 0 1913 154 149 69 chr13 85776243 85776612 -16096557 + LTR61 LTR ERV1 166 595 0 36586 176 19 24 chr13 85776612 85780232 -16092937 + HERV3 LTR ERV1 2 3573 -4853 3789 195 23 67 chr13 85780232 85781246 -16091923 + LTR5 LTR ERVK 1 969 0 36586 176 19 24 chr13 85781246 85784211 -16088958 + HERV3 LTR ERV1 3573 6552 -1874 2195 189 24 0 chr13 85784220 85784676 -16088493 + L1MB7 LINE L1 5675 6141 -43 1309 284 87 30 chr13 85784730 85785304 -16087865 - L1ME3A LINE L1 -45 6125 5519 1988 133 64 25 chr13 85785443 85785804 -16087365 - THE1C LTR MaLR 0 375 1 521 143 0 0 chr13 85788638 85788715 -16084454 - AluJb SINE Alu -34 278 202 185 176 0 0 chr13 85788720 85788754 -16084415 + L2 LINE L2 3280 3313 0 2306 101 19 0 chr13 85790289 85790596 -16082573 + AluSq SINE Alu 1 313 0 188 234 143 39 chr13 85791035 85791112 -16082057 + L3b LINE CR1 1401 1485 -98 226 268 191 45 chr13 85791284 85791441 -16081728 - MER5A DNA MER1_type 0 189 10 558 262 21 11 chr13 85791461 85791648 -16081521 - MER20 DNA MER1_type -3 216 28 2469 80 3 0 chr13 85792373 85792674 -16080495 + AluSg SINE Alu 1 302 -8 2012 151 3 3 chr13 85792977 85793275 -16079894 - AluJb SINE Alu -14 298 1 2309 100 3 3 chr13 85793346 85793645 -16079524 - AluSp SINE Alu -14 299 1 917 196 123 29 chr13 85793647 85793923 -16079246 - L1MC1 LINE L1 -6 6327 6026 1966 254 108 57 chr13 85794040 85794144 -16079025 + L1MC5 LINE L1 6491 6588 -1373 2223 83 0 24 chr13 85794144 85794469 -16078700 - AluSx SINE Alu 0 319 2 1966 254 108 57 chr13 85794469 85795228 -16077941 + L1MC5 LINE L1 6588 7436 -525 2163 102 10 7 chr13 85795228 85795522 -16077647 + AluSx SINE Alu 1 295 -17 1966 254 108 57 chr13 85795522 85795879 -16077290 + L1MC5 LINE L1 7436 7773 -188 347 228 52 51 chr13 85795953 85795991 -16077178 - L1MC4 LINE L1 -1338 6984 6948 315 0 0 0 chr13 85795991 85796026 -16077143 + (TG)n Simple_repeat Simple_repeat 2 36 0 347 228 52 51 chr13 85796026 85796093 -16077076 - L1MC4 LINE L1 -1374 6948 6883 2122 126 11 0 chr13 85796093 85796378 -16076791 - AluSx SINE Alu -24 288 1 347 228 52 51 chr13 85796378 85796416 -16076753 - L1MC4 LINE L1 -1439 6883 1974 364 232 122 0 chr13 85796594 85796676 -16076493 + MIR SINE MIR 3 94 -168 386 230 103 40 chr13 85796789 85796915 -16076254 - L2 LINE L2 -969 2345 2212 198 276 127 64 chr13 85797227 85797510 -16075659 - L2 LINE L2 -1082 2232 1932 387 327 13 26 chr13 85798896 85799052 -16074117 + L1ME4a LINE L1 5966 6119 -2 1749 172 17 65 chr13 85800110 85800512 -16072657 - MLT1B LTR MaLR 0 390 8 482 276 115 11 chr13 85802073 85802247 -16070922 - MIR SINE MIR 0 262 71 390 270 52 0 chr13 85802484 85802599 -16070570 + L1ME LINE L1 5562 5682 -439 1869 291 161 21 chr13 85802619 85803105 -16070064 + L2 LINE L2 1329 1746 -1568 2006 135 143 13 chr13 85803105 85803484 -16069685 + MSTA LTR MaLR 1 428 0 1869 291 161 21 chr13 85803484 85804329 -16068840 + L2 LINE L2 1746 2846 -468 193 198 117 27 chr13 85804362 85804473 -16068696 + L2 LINE L2 2940 3060 -253 3259 182 47 17 chr13 85804505 85804681 -16068488 - L1MB3 LINE L1 -17 6560 6391 2824 65 16 29 chr13 85804681 85805063 -16068106 + MER51B LTR ERV1 1 377 0 3259 182 47 17 chr13 85805063 85805841 -16067328 - L1MB3 LINE L1 -186 6391 23 1116 211 30 15 chr13 85805847 85806112 -16067057 - L1MC5 LINE L1 -444 7517 7249 614 99 0 0 chr13 85806225 85806316 -16066853 - AluJ/FRAM SINE Alu -1 311 221 335 283 58 52 chr13 85806377 85806568 -16066601 - L1MC4a LINE L1 -1244 6564 6373 1091 110 0 0 chr13 85806613 85806749 -16066420 + AluSq/x SINE Alu 1 136 -177 354 286 140 35 chr13 85806879 85807050 -16066119 - L1MC4a LINE L1 -1571 6237 6049 847 131 21 140 chr13 85807064 85807300 -16065869 + L1MA10 LINE L1 6069 6276 -58 2178 122 3 0 chr13 85807300 85807596 -16065573 - AluSx SINE Alu -15 297 1 442 162 0 0 chr13 85807621 85807695 -16065474 - L1MC4a LINE L1 -1992 5816 5743 954 128 67 6 chr13 85807915 85808095 -16065074 + L1MB3 LINE L1 5993 6183 0 2257 121 3 3 chr13 85811648 85811954 -16061215 - AluSx SINE Alu -6 306 1 243 125 0 0 chr13 85815223 85815263 -16057906 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 487 190 43 43 chr13 85815385 85815501 -16057668 - L1ME3A LINE L1 0 6170 6055 * 623 308 58 0 chr13 85815499 85815791 -16057378 + L1M4 LINE L1 4891 5199 -947 1891 137 17 33 chr13 85816897 85817197 -16055972 + AluJb SINE Alu 5 299 -13 29 47 0 0 chr13 85817333 85817376 -16055793 + AT_rich Low_complexity Low_complexity 1 43 0 314 272 141 58 chr13 85818054 85818245 -16054924 + L2 LINE L2 3107 3313 0 432 211 10 0 chr13 85818857 85818966 -16054203 - MIR SINE MIR -65 143 70 917 186 16 11 chr13 85819306 85819494 -16053675 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr13 85819622 85819646 -16053523 + AT_rich Low_complexity Low_complexity 1 24 0 227 294 0 0 chr13 85819847 85819915 -16053254 - L1MB8 LINE L1 0 6178 6111 215 314 12 35 chr13 85820326 85820412 -16052757 + L3 LINE CR1 1387 1470 -107 764 256 96 86 chr13 85821209 85821660 -16051509 - L1MC4 LINE L1 -41 8001 7543 2049 87 8 0 chr13 85821660 85821925 -16051244 - AluSp SINE Alu -16 297 31 764 256 96 86 chr13 85821925 85821972 -16051197 - L1MC4 LINE L1 -499 7543 7498 2283 101 0 0 chr13 85822522 85822819 -16050350 + AluSx SINE Alu 1 297 -15 224 293 0 0 chr13 85823144 85823202 -16049967 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 214 128 21 21 chr13 85825027 85825074 -16048095 + GA-rich Low_complexity Low_complexity 3 49 0 224 30 30 0 chr13 85825173 85825206 -16047963 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 360 332 62 37 chr13 85826678 85826919 -16046250 + MLT1K LTR MaLR 73 319 -269 678 208 83 10 chr13 85827124 85827316 -16045853 - L1M4 LINE L1 -743 5403 5198 442 131 0 81 chr13 85827320 85827419 -16045750 - AluSx SINE Alu -2 308 218 1057 150 23 6 chr13 85827419 85827592 -16045577 - AluSx SINE Alu -125 187 12 1919 206 47 2 chr13 85827593 85828020 -16045149 - L1M4 LINE L1 -932 5214 4769 198 0 0 0 chr13 85828023 85828045 -16045124 + (T)n Simple_repeat Simple_repeat 1 22 0 2046 231 72 18 chr13 85828953 85829520 -16043649 - L1M4 LINE L1 -1804 4342 3745 2428 83 0 16 chr13 85829523 85829836 -16043333 - AluSp SINE Alu -5 308 1 2093 101 0 4 chr13 85830302 85830569 -16042600 - AluSx SINE Alu -14 298 33 1538 176 19 8 chr13 85830569 85830893 -16042276 + AluJo SINE Alu 18 344 0 2280 75 0 4 chr13 85831362 85831676 -16041493 - AluY SINE Alu 0 313 1 301 243 108 0 chr13 85831951 85832025 -16041144 - L2 LINE L2 -2 3311 3230 180 0 0 0 chr13 85833133 85833153 -16040016 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1078 114 119 11 chr13 85833165 85833341 -16039828 + MSTA LTR MaLR 234 428 0 910 148 0 15 chr13 85833353 85833488 -16039681 - FLAM_C SINE Alu 0 133 1 189 0 0 0 chr13 85833670 85833691 -16039478 + (A)n Simple_repeat Simple_repeat 1 21 0 37 23 0 0 chr13 85834495 85834539 -16038630 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr13 85834727 85834747 -16038422 + (TG)n Simple_repeat Simple_repeat 1 20 0 347 328 40 23 chr13 85834980 85835154 -16038015 + MER5A DNA MER1_type 7 183 -6 2404 210 108 16 chr13 85835907 85836298 -16036871 + MER82 DNA MER2_type 1 461 -192 3448 142 65 4 chr13 85836298 85836820 -16036349 - MER41C LTR ERV1 0 554 1 2404 210 108 16 chr13 85836820 85836991 -16036178 + MER82 DNA MER2_type 461 615 -38 344 281 85 25 chr13 85837006 85837205 -16035964 + LTR33 LTR ERVL 10 220 -301 567 263 67 11 chr13 85837266 85837445 -16035724 + LTR33 LTR ERVL 328 516 -5 243 0 0 0 chr13 85838564 85838591 -16034578 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1130 225 87 31 chr13 85838809 85839200 -16033969 - Charlie1 DNA MER1_type 0 2761 2349 21 57 0 0 chr13 85843237 85843272 -16029897 + AT_rich Low_complexity Low_complexity 1 35 0 1630 203 121 5 chr13 85843782 85844196 -16028973 + MLT1C LTR MaLR 6 467 0 409 320 8 25 chr13 85844577 85844749 -16028420 - MIR SINE MIR -37 171 1 382 256 171 56 chr13 85846110 85846415 -16026754 + L2 LINE L2 2405 2744 -570 252 169 42 56 chr13 85846623 85846694 -16026475 + L2 LINE L2 3179 3248 -65 213 129 0 0 chr13 85848235 85848266 -16024903 + MIR SINE MIR 114 144 -64 24 32 0 0 chr13 85849557 85849588 -16023581 + AT_rich Low_complexity Low_complexity 1 31 0 237 83 0 0 chr13 85850772 85850808 -16022361 + (CA)n Simple_repeat Simple_repeat 1 36 0 448 209 27 36 chr13 85850844 85850954 -16022215 + MIR SINE MIR 79 187 -75 2308 83 10 3 chr13 85851629 85851931 -16021238 - AluSc SINE Alu -5 304 1 588 202 8 1 chr13 85852324 85852455 -16020714 - MER5A DNA MER1_type -57 123 1 811 254 23 28 chr13 85853732 85853949 -16019220 - MIR SINE MIR -3 259 44 1106 204 34 13 chr13 85854028 85854263 -16018906 + MIR SINE MIR 2 241 -21 258 217 43 29 chr13 85857401 85857470 -16015699 - HsTC2 DNA Tc2 -1826 72 3 2260 108 10 13 chr13 85857512 85857690 -16015479 - AluSx SINE Alu -7 305 127 189 0 0 0 chr13 85857690 85857711 -16015458 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2260 108 10 13 chr13 85857711 85857838 -16015331 - AluSx SINE Alu -185 127 1 383 310 62 43 chr13 85858055 85858313 -16014856 - L3 LINE CR1 -8 1569 1307 205 220 0 20 chr13 85859245 85859295 -16013874 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 2040 127 3 52 chr13 85860251 85860575 -16012594 - AluSx SINE Alu -4 308 1 21 0 0 0 chr13 85862324 85862345 -16010824 + AT_rich Low_complexity Low_complexity 1 21 0 835 233 95 41 chr13 85865151 85865468 -16007701 + MER46C DNA MER2_type 1 334 -4 661 292 104 17 chr13 85866409 85866697 -16006472 - L1MC4a LINE L1 -1896 5912 5600 510 254 59 64 chr13 85866969 85867189 -16005980 - MIR SINE MIR -17 245 27 189 186 93 0 chr13 85867524 85867567 -16005602 + L2 LINE L2 3225 3271 -1 356 263 26 67 chr13 85867637 85867831 -16005338 + L1M4 LINE L1 4959 5144 -1002 21 36 0 0 chr13 85867989 85868017 -16005152 + AT_rich Low_complexity Low_complexity 1 28 0 2297 105 0 0 chr13 85871187 85871491 -16001678 + AluSg SINE Alu 1 304 -6 2021 214 113 6 chr13 85872310 85872806 -16000363 + MER119 DNA MER1_type 32 580 -3 1508 98 0 10 chr13 85873283 85873486 -15999683 - AluSq SINE Alu -112 201 1 238 328 62 39 chr13 85874902 85875030 -15998139 - MIR SINE MIR -119 143 13 439 210 0 0 chr13 85875153 85875234 -15997935 - MIR SINE MIR -6 256 176 264 30 0 0 chr13 85875617 85875650 -15997519 + (TG)n Simple_repeat Simple_repeat 2 34 0 202 265 12 24 chr13 85876558 85876641 -15996528 + G-rich Low_complexity Low_complexity 3 84 0 220 303 61 20 chr13 85877788 85877887 -15995282 - MIR3 SINE MIR -49 159 57 1465 182 90 74 chr13 85878133 85878302 -15994867 + MLT1C LTR MaLR 6 171 -296 1956 144 3 7 chr13 85878302 85878600 -15994569 + AluSg SINE Alu 1 297 -13 1465 182 90 74 chr13 85878600 85878865 -15994304 + MLT1C LTR MaLR 171 447 -20 210 37 0 0 chr13 85879499 85879526 -15993643 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2898 108 31 17 chr13 85880601 85880952 -15992217 + MSTB LTR MaLR 5 364 -62 1542 181 3 54 chr13 85880952 85881266 -15991903 - AluJo SINE Alu -14 298 1 2898 108 31 17 chr13 85881266 85881330 -15991839 + MSTB LTR MaLR 364 426 0 346 279 218 39 chr13 85881927 85882239 -15990930 + L2 LINE L2 2946 3313 0 1640 176 36 0 chr13 85884377 85884655 -15988514 + AluJo SINE Alu 1 288 -24 384 267 26 97 chr13 85884784 85884979 -15988190 - MER5A DNA MER1_type -8 181 1 362 306 197 5 chr13 85885140 85885333 -15987836 - MIR SINE MIR -5 257 28 351 217 72 0 chr13 85885440 85885523 -15987646 - MIR SINE MIR -65 197 109 673 259 132 61 chr13 85885529 85885985 -15987184 + MLT1J LTR MaLR 7 494 -17 1339 247 40 53 chr13 85886471 85887121 -15986048 + L1MC5 LINE L1 7233 7784 -177 1871 162 13 10 chr13 85888292 85888601 -15984568 - AluJo SINE Alu -2 310 1 792 278 57 55 chr13 85888703 85889121 -15984048 + LTR16B LTR ERVL 11 429 -35 1093 251 147 23 chr13 85889302 85889732 -15983437 + MLT1J LTR MaLR 14 496 -15 428 246 17 0 chr13 85889897 85889914 -15983255 - L1MA10 LINE L1 0 6334 6318 1942 208 23 16 chr13 85889914 85890421 -15982748 - L1ME1 LINE L1 -9 6155 5618 2121 99 4 0 chr13 85892105 85892378 -15980791 + AluSq SINE Alu 1 274 -39 354 297 51 36 chr13 85893065 85893203 -15979966 + MIR3 SINE MIR 60 199 -9 383 363 121 14 chr13 85893449 85893738 -15979431 + L2 LINE L2 2949 3268 -4 1948 180 93 0 chr13 85893830 85894186 -15978983 + MLT1B LTR MaLR 2 390 0 381 191 0 22 chr13 85894219 85894308 -15978861 - L1MB3 LINE L1 -27 6156 6070 * 412 147 137 0 chr13 85894300 85894402 -15978767 - L1MA4 LINE L1 -289 6011 5896 938 233 33 25 chr13 85895481 85895726 -15977443 + MIR SINE MIR 6 252 -10 501 238 130 35 chr13 85898018 85898279 -15974890 + MLT1D LTR MaLR 1 286 -219 192 309 24 71 chr13 85898577 85898661 -15974508 + L2 LINE L2 3139 3218 -54 1814 168 7 0 chr13 85899112 85899441 -15973728 - AluJb SINE Alu 0 312 1 1395 135 14 19 chr13 85901217 85901432 -15971737 + AluJo SINE Alu 1 214 -98 392 150 150 71 chr13 85902150 85902277 -15970892 + L1ME4a LINE L1 5979 6115 -6 196 327 39 0 chr13 85902969 85903021 -15970148 + L2 LINE L2 3133 3186 -86 216 0 0 0 chr13 85903039 85903063 -15970106 + (T)n Simple_repeat Simple_repeat 1 24 0 512 261 104 46 chr13 85903099 85903230 -15969939 + MIR SINE MIR 7 129 -133 2573 65 0 0 chr13 85903230 85903537 -15969632 + AluY SINE Alu 1 307 -4 512 261 104 46 chr13 85903537 85903646 -15969523 + MIR SINE MIR 129 261 -1 193 254 45 60 chr13 85903747 85903814 -15969355 + L2 LINE L2 3204 3269 -3 1114 201 110 27 chr13 85904671 85904970 -15968199 - MER33 DNA MER1_type 0 324 1 1877 50 0 0 chr13 85905073 85905295 -15967874 + L1PB1 LINE L1 5929 6150 -1 194 295 33 0 chr13 85905345 85905406 -15967763 + L2 LINE L2 3247 3309 -4 230 233 123 14 chr13 85905421 85905494 -15967675 - L3 LINE CR1 -61 1516 1436 1075 353 84 30 chr13 85905554 85906552 -15966617 - L3 LINE CR1 -341 1236 185 265 342 61 26 chr13 85908479 85908593 -15964576 - L2 LINE L2 -8 3264 3147 288 300 21 36 chr13 85908744 85908884 -15964285 - MIR SINE MIR -72 190 53 283 213 101 49 chr13 85910154 85910309 -15962860 - HAL1b LINE L1 -2 6119 1196 290 251 132 65 chr13 85910680 85910722 -15962447 + L1ME4a LINE L1 5715 5753 -368 1802 99 6 119 chr13 85910722 85911065 -15962104 + AluSx SINE Alu 1 304 -8 290 251 132 65 chr13 85911065 85911280 -15961889 + L1ME4a LINE L1 5753 6007 -114 2347 98 0 0 chr13 85911280 85911575 -15961594 + AluSg SINE Alu 1 295 -15 290 251 132 65 chr13 85911575 85911686 -15961483 + L1ME4a LINE L1 6007 6109 -12 262 257 162 9 chr13 85912584 85912689 -15960480 + MIR SINE MIR 2 122 -140 1062 201 112 0 chr13 85912690 85912959 -15960210 + MLT1C LTR MaLR 1 299 -168 24 0 0 0 chr13 85914944 85914968 -15958201 + AT_rich Low_complexity Low_complexity 1 24 0 330 143 159 0 chr13 85915044 85915107 -15958062 + MER5A DNA MER1_type 34 106 -83 330 318 56 16 chr13 85915215 85915341 -15957828 + MIR3 SINE MIR 72 202 -6 306 215 112 63 chr13 85916540 85916730 -15956439 - MIR SINE MIR -61 147 1 21 36 0 0 chr13 85916880 85916908 -15956261 + AT_rich Low_complexity Low_complexity 1 28 0 249 257 169 37 chr13 85916956 85917092 -15956077 + MIR3 SINE MIR 16 169 -39 25 51 0 0 chr13 85918827 85918866 -15954303 + AT_rich Low_complexity Low_complexity 1 39 0 2395 75 0 22 chr13 85919207 85919525 -15953644 + AluY SINE Alu 1 311 0 2445 151 47 5 chr13 85919627 85920052 -15953117 + L1MB3 LINE L1 5741 6183 0 191 316 18 53 chr13 85920727 85920841 -15952328 - L2 LINE L2 -26 3246 3137 370 290 197 38 chr13 85921135 85921425 -15951744 - L2 LINE L2 -4 3268 2933 953 78 8 0 chr13 85921545 85921674 -15951495 + MER41A LTR ERV1 337 466 -88 204 336 178 43 chr13 85921887 85922235 -15950934 - L2 LINE L2 -858 2456 2062 278 287 156 16 chr13 85922702 85922824 -15950345 + MIR3 SINE MIR 42 180 -28 544 279 113 10 chr13 85923797 85924001 -15949168 - MIR SINE MIR -29 233 9 650 287 190 23 chr13 85924009 85924538 -15948631 + L1MC4a LINE L1 5317 5810 -311 25 51 0 0 chr13 85924740 85924779 -15948390 + AT_rich Low_complexity Low_complexity 1 39 0 715 143 84 19 chr13 85927201 85927355 -15945814 + L1MA5 LINE L1 6136 6299 -1 1121 138 0 12 chr13 85927508 85927668 -15945501 + AluSq SINE Alu 1 158 -155 2199 125 0 7 chr13 85927770 85928067 -15945102 - AluSx SINE Alu -17 295 1 491 175 39 0 chr13 85928094 85928197 -15944972 + L1ME3 LINE L1 5869 5975 -187 304 260 50 10 chr13 85928222 85928322 -15944847 + L1ME3 LINE L1 6059 6162 0 249 232 14 0 chr13 85928453 85928522 -15944647 + (TA)n Simple_repeat Simple_repeat 2 71 0 238 257 14 0 chr13 85929266 85929336 -15943833 + L1MC/D LINE L1 5667 5737 -2071 21 0 0 0 chr13 85929381 85929402 -15943767 + AT_rich Low_complexity Low_complexity 1 21 0 258 243 0 14 chr13 85930393 85930463 -15942706 + MER5B DNA MER1_type 1 69 -109 535 215 44 30 chr13 85930565 85930700 -15942469 + MER5B DNA MER1_type 40 176 -2 396 275 28 56 chr13 85930882 85931024 -15942145 - MIR SINE MIR -113 149 12 327 258 154 50 chr13 85931523 85931783 -15941386 + L2 LINE L2 3026 3312 -1 609 215 12 2 chr13 85932061 85932231 -15940938 - MER20 DNA MER1_type 0 219 11 258 163 0 0 chr13 85932708 85932751 -15940418 + MIR SINE MIR 110 152 -110 186 43 0 0 chr13 85933530 85933553 -15939616 + (T)n Simple_repeat Simple_repeat 1 23 0 578 259 36 68 chr13 85933639 85933917 -15939252 + MER102b DNA MER1_type 72 340 -1 852 257 44 32 chr13 85933919 85934262 -15938907 + L1MEc LINE L1 38 384 -6012 1137 248 29 10 chr13 85934442 85934752 -15938417 + HAL1 LINE L1 1473 1788 -719 2177 86 32 0 chr13 85935006 85935286 -15937883 - AluSg SINE Alu -13 297 9 332 119 17 0 chr13 85935901 85935960 -15937209 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 912 240 39 2 chr13 85936217 85936461 -15936708 - MIR SINE MIR -5 257 2 247 213 0 0 chr13 85936587 85936634 -15936535 - MIR SINE MIR -155 107 61 319 268 116 22 chr13 85939673 85939811 -15933358 - MIR SINE MIR 0 262 112 1873 168 70 63 chr13 85940393 85940778 -15932391 + MSTB2 LTR MaLR 1 393 -64 2087 116 3 0 chr13 85940778 85941091 -15932078 + AluSx SINE Alu 1 314 0 1873 168 70 63 chr13 85941091 85941149 -15932020 + MSTB2 LTR MaLR 393 449 -8 203 225 0 0 chr13 85942918 85942958 -15930211 - MIR SINE MIR -21 241 202 2456 88 0 0 chr13 85943507 85943814 -15929355 - AluSg SINE Alu -3 307 1 192 40 0 0 chr13 85943900 85943925 -15929244 + (A)n Simple_repeat Simple_repeat 1 25 0 1045 224 48 0 chr13 85944494 85944704 -15928465 - MER58A DNA MER1_type -4 220 1 32 0 0 0 chr13 85944834 85944866 -15928303 + AT_rich Low_complexity Low_complexity 1 32 0 2143 133 0 7 chr13 85945156 85945465 -15927704 + AluSx SINE Alu 1 307 -5 24 53 0 0 chr13 85945549 85945587 -15927582 + AT_rich Low_complexity Low_complexity 1 38 0 25 51 0 0 chr13 85945833 85945872 -15927297 + AT_rich Low_complexity Low_complexity 1 39 0 746 71 48 79 chr13 85946504 85946548 -15926621 - L1MB3 LINE L1 -1 6182 6138 2424 69 3 0 chr13 85946548 85946839 -15926330 - AluSx SINE Alu -20 292 1 746 71 48 79 chr13 85946839 85946920 -15926249 - L1MB3 LINE L1 -45 6138 6061 373 187 0 66 chr13 85946932 85947023 -15926146 + L2 LINE L2 3225 3309 -4 2420 70 3 0 chr13 85947157 85947493 -15925676 - AluY SINE Alu 0 311 1 2127 121 0 7 chr13 85947496 85947793 -15925376 - AluSx SINE Alu -17 295 1 919 109 8 16 chr13 85947794 85947922 -15925247 - AluJb SINE Alu -185 127 1 2179 110 0 7 chr13 85948006 85948296 -15924873 + AluSx SINE Alu 1 288 -24 291 28 0 0 chr13 85948300 85948336 -15924833 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 653 255 184 73 chr13 85949653 85949761 -15923408 + MLT1H1 LTR MaLR 37 132 -423 1760 155 3 28 chr13 85949761 85950100 -15923069 - AluJb SINE Alu 0 332 1 653 255 184 73 chr13 85950100 85950457 -15922712 + MLT1H1 LTR MaLR 132 555 0 348 365 78 31 chr13 85950746 85950938 -15922231 - L2 LINE L2 0 3272 3072 180 0 0 0 chr13 85951174 85951194 -15921975 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2099 132 3 3 chr13 85951381 85951691 -15921478 + AluSx SINE Alu 1 310 -2 1777 155 0 0 chr13 85952267 85952545 -15920624 + AluJo SINE Alu 35 312 0 299 96 19 0 chr13 85953288 85953340 -15919829 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 367 331 153 6 chr13 85954163 85954326 -15918843 + MIR3 SINE MIR 19 205 -3 25 0 0 0 chr13 85954707 85954732 -15918437 + AT_rich Low_complexity Low_complexity 1 25 0 9799 67 4 5 chr13 85956319 85958355 -15914814 - L1PA7 LINE L1 -29 6125 4092 23 33 0 0 chr13 85958649 85958679 -15914490 + AT_rich Low_complexity Low_complexity 1 30 0 2580 53 0 0 chr13 85959278 85959580 -15913589 - AluY SINE Alu -9 302 1 513 293 50 54 chr13 85959655 85959894 -15913275 - L2 LINE L2 -358 2956 2719 1653 80 54 27 chr13 85960364 85960588 -15912581 - MER30 DNA MER1_type 0 230 1 255 125 0 0 chr13 85963069 85963109 -15910060 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr13 85963109 85963129 -15910040 + (TC)n Simple_repeat Simple_repeat 2 21 0 565 288 6 6 chr13 85965821 85965984 -15907185 + MER69A DNA AcHobo 15 177 0 663 266 19 43 chr13 85966833 85967040 -15906129 + MIR SINE MIR 5 206 -56 200 167 0 0 chr13 85967085 85967115 -15906054 + G-rich Low_complexity Low_complexity 2 31 0 235 236 201 74 chr13 85967379 85968197 -15904972 + L2 LINE L2 2048 3001 -271 333 0 0 0 chr13 85968852 85968889 -15904280 + (CA)n Simple_repeat Simple_repeat 2 38 0 749 190 45 132 chr13 85969747 85969989 -15903180 - MER58A DNA MER1_type 0 224 4 742 279 137 18 chr13 85970256 85970651 -15902518 + L1ME4a LINE L1 5446 5887 -234 316 280 61 8 chr13 85970698 85970830 -15902339 + L1ME4a LINE L1 5961 6099 -22 1838 162 3 3 chr13 85970881 85971171 -15901998 + AluJb SINE Alu 5 294 -18 2235 120 0 0 chr13 85971175 85971474 -15901695 + AluSc SINE Alu 1 299 -10 32 0 0 0 chr13 85971474 85971506 -15901663 + AT_rich Low_complexity Low_complexity 1 32 0 402 284 49 12 chr13 85971963 85972125 -15901044 + L1ME LINE L1 5559 5726 -395 263 135 0 77 chr13 85972260 85972312 -15900857 - MLT1B LTR MaLR -338 52 5 2087 136 3 0 chr13 85974260 85974554 -15898615 - AluSx SINE Alu -17 295 1 24 77 0 0 chr13 85974591 85974643 -15898526 + AT_rich Low_complexity Low_complexity 1 52 0 768 221 62 54 chr13 85974948 85975171 -15897998 - MIR SINE MIR -1 261 34 1873 146 23 3 chr13 85975171 85975473 -15897696 - AluJb SINE Alu -4 308 1 768 221 62 54 chr13 85975473 85975507 -15897662 - MIR SINE MIR -228 34 2 1054 193 14 19 chr13 85975891 85976104 -15897065 - MER20 DNA MER1_type -6 213 2 34 24 0 0 chr13 85976279 85976320 -15896849 + AT_rich Low_complexity Low_complexity 1 41 0 1150 73 53 0 chr13 85976628 85976779 -15896390 - AluY SINE Alu -10 301 143 209 370 49 20 chr13 85977321 85977524 -15895645 + L2 LINE L2 2812 3020 -252 2392 111 43 6 chr13 85977580 85977931 -15895238 - THE1B LTR MaLR 0 364 1 286 197 61 15 chr13 85978090 85978156 -15895013 + MER5A DNA MER1_type 119 187 -2 483 288 126 50 chr13 85978297 85978655 -15894514 - MLT1J2 LTR MaLR -52 398 14 31 44 0 0 chr13 85978668 85978713 -15894456 + AT_rich Low_complexity Low_complexity 1 45 0 1220 161 115 0 chr13 85978713 85978973 -15894196 - MER33 DNA MER1_type -34 290 1 2099 125 3 3 chr13 85979018 85979313 -15893856 + AluSg SINE Alu 1 295 -15 348 283 28 0 chr13 85980652 85980758 -15892411 + MER5A DNA MER1_type 29 137 -52 426 151 0 0 chr13 85980758 85980831 -15892338 + (TTA)n Simple_repeat Simple_repeat 1 73 0 242 273 52 0 chr13 85981611 85981688 -15891481 + MIR SINE MIR 64 144 -118 780 255 50 21 chr13 85981710 85981949 -15891220 - MER96B DNA MER1_type? -171 246 1 22 35 0 0 chr13 85982013 85982042 -15891127 + AT_rich Low_complexity Low_complexity 1 29 0 44 20 0 0 chr13 85982152 85982203 -15890966 + AT_rich Low_complexity Low_complexity 1 51 0 843 114 60 12 chr13 85982847 85983013 -15890156 - L1MA7 LINE L1 -6 6285 6112 312 120 0 0 chr13 85983041 85983091 -15890078 + (TGG)n Simple_repeat Simple_repeat 1 50 0 234 282 84 61 chr13 85984232 85984363 -15888806 - L2 LINE L2 -2 3270 3137 500 241 73 56 chr13 85984624 85984856 -15888313 - L2 LINE L2 -4 3309 3074 404 227 78 28 chr13 85985299 85985440 -15887729 - MIR3 SINE MIR -10 198 51 2183 103 7 0 chr13 85986222 85986513 -15886656 + AluSx SINE Alu 1 293 -19 192 289 47 123 chr13 85987561 85987772 -15885397 - L2 LINE L2 -86 3186 2992 2088 160 0 0 chr13 85988780 85989086 -15884083 + AluJb SINE Alu 1 306 -6 541 222 202 0 chr13 85989667 85989865 -15883304 + MIR SINE MIR 6 243 -19 830 176 13 0 chr13 85989959 85990112 -15883057 + AluJb SINE Alu 147 301 -11 844 181 0 13 chr13 85990904 85991053 -15882116 - AluJb SINE Alu -13 299 153 245 336 95 15 chr13 85991321 85991595 -15881574 + L2 LINE L2 2622 2917 -397 2591 51 0 16 chr13 85992728 85993044 -15880125 - AluY SINE Alu 0 311 1 1878 173 55 0 chr13 85993146 85993476 -15879693 - MER7A DNA MER2_type 0 346 1 581 275 101 45 chr13 85996469 85996825 -15876344 - L2 LINE L2 -339 2975 2600 2360 87 13 3 chr13 85998013 85998312 -15874857 - AluSq SINE Alu -11 302 1 2998 153 13 4 chr13 85999052 85999582 -15873587 - L1MB3 LINE L1 -17 6166 5632 1090 167 0 0 chr13 85999594 85999768 -15873401 - AluJ SINE Alu -27 285 112 578 222 15 30 chr13 86000971 86001106 -15872063 - AluJ SINE Alu -178 134 2 2365 92 0 0 chr13 86002510 86002804 -15870365 - AluSq SINE Alu -19 294 1 2279 98 3 3 chr13 86002845 86003140 -15870029 - AluSg SINE Alu -15 295 1 315 0 0 0 chr13 86005466 86005501 -15867668 + (CA)n Simple_repeat Simple_repeat 2 36 0 1873 161 0 3 chr13 86005638 86005929 -15867240 + AluSx SINE Alu 1 290 -22 2125 128 3 7 chr13 86006995 86007299 -15865870 + AluSx SINE Alu 1 303 -9 1022 283 94 7 chr13 86007455 86007869 -15865300 + MLT1J2 LTR MaLR 1 450 0 23 54 0 0 chr13 86008089 86008126 -15865043 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr13 86008137 86008174 -15864995 + AT_rich Low_complexity Low_complexity 1 37 0 955 176 126 0 chr13 86009006 86009188 -15863981 - MER58A DNA MER1_type 0 224 20 296 133 29 95 chr13 86009196 86009301 -15863868 + LTR41 LTR ERVL 654 751 -22 580 258 31 13 chr13 86011173 86011332 -15861837 + MER5A DNA MER1_type 1 162 -27 314 307 139 7 chr13 86012316 86012453 -15860716 + MER69 DNA AcHobo 347 501 -2025 2078 212 98 4 chr13 86012455 86012965 -15860204 + MER69 DNA AcHobo 1966 2523 -3 195 42 0 0 chr13 86013166 86013190 -15859979 + (A)n Simple_repeat Simple_repeat 1 24 0 185 268 137 58 chr13 86014570 86014760 -15858409 - L2 LINE L2 -1 3271 3067 420 231 51 17 chr13 86014770 86014887 -15858282 + L2 LINE L2 3191 3311 -2 361 210 196 77 chr13 86015032 86015175 -15857994 - MER69A DNA AcHobo -13 164 5 232 274 32 0 chr13 86016010 86016072 -15857097 - MIR3 SINE MIR -34 174 111 251 145 36 145 chr13 86017369 86017403 -15855766 + L1MC5 LINE L1 7851 7887 -74 810 186 93 0 chr13 86017403 86017575 -15855594 + MER5A DNA MER1_type 1 188 -1 251 145 36 145 chr13 86017575 86017623 -15855546 + L1MC5 LINE L1 7887 7924 -37 250 297 22 87 chr13 86017636 86017774 -15855395 + MIR SINE MIR 57 185 -77 1157 193 52 61 chr13 86018634 86018904 -15854265 + MER33 DNA MER1_type 1 269 -2316 2028 132 3 0 chr13 86018904 86019191 -15853978 + AluSx SINE Alu 1 288 -24 1157 193 52 61 chr13 86019191 86019246 -15853923 + MER33 DNA MER1_type 269 323 -1 1734 171 10 20 chr13 86020560 86020858 -15852311 - AluJo SINE Alu -13 299 5 372 299 80 0 chr13 86021664 86021801 -15851368 - MIR3 SINE MIR -35 173 26 2394 81 0 3 chr13 86021990 86022287 -15850882 + AluY SINE Alu 1 296 -15 569 247 110 18 chr13 86022624 86022843 -15850326 + MIR SINE MIR 24 262 0 1881 151 7 3 chr13 86024165 86024456 -15848713 - AluJb SINE Alu -17 295 4 2345 104 7 0 chr13 86025031 86025340 -15847829 + AluSq SINE Alu 1 311 -2 365 313 91 57 chr13 86025572 86025663 -15847506 + L1ME4a LINE L1 5744 5830 -291 1939 120 73 0 chr13 86025663 86025938 -15847231 + AluSx SINE Alu 1 295 -17 365 313 91 57 chr13 86025938 86026030 -15847139 + L1ME4a LINE L1 5830 5917 -204 366 23 0 0 chr13 86026030 86026073 -15847096 + (CA)n Simple_repeat Simple_repeat 2 44 0 365 313 91 57 chr13 86026073 86026240 -15846929 + L1ME4a LINE L1 5917 6107 -14 368 291 113 64 chr13 86027315 86027413 -15845756 - L2 LINE L2 -19 3294 3202 1709 161 0 48 chr13 86027413 86027723 -15845446 - AluJo SINE Alu -17 295 1 368 291 113 64 chr13 86027723 86028233 -15844936 - L2 LINE L2 -111 3202 2625 24 32 0 0 chr13 86029234 86029265 -15843904 + AT_rich Low_complexity Low_complexity 1 31 0 742 155 96 43 chr13 86031934 86031946 -15841223 + L1MA9 LINE L1 6125 6135 -177 1726 94 31 0 chr13 86031946 86032169 -15841000 + MER30 DNA MER1_type 1 230 0 742 155 96 43 chr13 86032169 86032335 -15840834 + L1MA9 LINE L1 6135 6311 -1 736 161 178 78 chr13 86032445 86032675 -15840494 + MSTD LTR MaLR 1 253 -143 227 300 0 0 chr13 86033375 86033425 -15839744 + L2 LINE L2 3210 3259 -13 2607 57 0 0 chr13 86033605 86033906 -15839263 + AluY SINE Alu 1 301 -10 1485 83 46 1 chr13 86034005 86034232 -15838937 + L1PA8 LINE L1 5900 6168 -4 1500 182 0 21 chr13 86034922 86035202 -15837967 + AluJo SINE Alu 15 288 -24 3522 164 17 38 chr13 86035254 86035914 -15837255 + L1MB3 LINE L1 5536 6181 -2 763 110 0 46 chr13 86037481 86037590 -15835579 + U6 snRNA snRNA 1 104 -3 2640 163 40 161 chr13 86037590 86038272 -15834897 + L1MB7 LINE L1 5290 5949 -235 652 13 0 0 chr13 86038272 86038347 -15834822 + AluYb8 SINE Alu 237 311 -7 2640 163 40 161 chr13 86038347 86038558 -15834611 + L1MB7 LINE L1 5949 6184 0 2025 118 4 4 chr13 86039259 86039565 -15833604 - AluSg SINE Alu 0 306 1 932 298 125 11 chr13 86040098 86040673 -15832496 + MERVL LTR ERVL 4532 5230 -534 1160 180 161 16 chr13 86041162 86041742 -15831427 + LTR50 LTR ERVL 4 789 -6 3457 162 129 13 chr13 86041787 86042485 -15830684 + L1MB7 LINE L1 5352 6130 -54 372 255 153 2 chr13 86043551 86043681 -15829488 - MIR SINE MIR -57 151 3 1975 126 0 39 chr13 86044436 86044745 -15828424 + AluSx SINE Alu 1 297 -15 34 89 0 0 chr13 86044847 86044937 -15828232 + AT_rich Low_complexity Low_complexity 1 90 0 243 333 29 10 chr13 86045582 86045684 -15827485 + L3 LINE CR1 1368 1471 -106 275 309 63 40 chr13 86045926 86046052 -15827117 - MIR3 SINE MIR -70 138 10 453 306 122 5 chr13 86046675 86046897 -15826272 + MIR SINE MIR 1 248 -14 506 285 54 58 chr13 86047566 86047960 -15825209 + MLT1J LTR MaLR 24 468 -43 1851 153 20 91 chr13 86047984 86048452 -15824717 + MLT2D LTR ERVL 1 397 0 1421 177 25 60 chr13 86048456 86048786 -15824383 + MLT1A1 LTR MaLR 12 329 -36 2282 100 7 0 chr13 86048786 86049085 -15824084 - AluSc SINE Alu -8 301 1 1421 177 25 60 chr13 86049085 86049121 -15824048 + MLT1A1 LTR MaLR 329 365 0 420 276 86 0 chr13 86049159 86049275 -15823894 - L2 LINE L2 -1 3312 3187 530 147 21 0 chr13 86049312 86049407 -15823762 + L1MB3 LINE L1 6085 6181 -2 2894 227 76 17 chr13 86049465 86050359 -15822810 + L1ME1 LINE L1 5227 6161 -5 2462 89 0 3 chr13 86050539 86050853 -15822316 - AluSq SINE Alu 0 313 1 22 56 0 0 chr13 86051753 86051789 -15821380 + AT_rich Low_complexity Low_complexity 1 36 0 614 244 7 22 chr13 86052076 86052211 -15820958 + MIR SINE MIR 33 165 -97 1451 187 102 44 chr13 86052251 86052594 -15820575 + MLT1A1 LTR MaLR 3 365 0 25 0 0 0 chr13 86052735 86052760 -15820409 + AT_rich Low_complexity Low_complexity 1 25 0 211 196 0 43 chr13 86052870 86052916 -15820253 - L2 LINE L2 -6 3307 3264 1865 163 10 0 chr13 86053449 86053743 -15819426 + AluJo SINE Alu 1 297 -15 1289 248 89 27 chr13 86053867 86054306 -15818863 + MLT1C LTR MaLR 1 466 -1 202 275 100 0 chr13 86054457 86054537 -15818632 - MIR SINE MIR -111 151 64 201 258 76 0 chr13 86054764 86054830 -15818339 - L2 LINE L2 -929 2385 2315 1383 183 93 27 chr13 86054989 86055472 -15817697 + LTR55 LTR ERV 2 546 -2 282 213 33 0 chr13 86056173 86056234 -15816935 + L2 LINE L2 3210 3272 0 304 324 111 0 chr13 86056534 86056642 -15816527 + L2 LINE L2 3148 3267 -5 4013 133 101 11 chr13 86057265 86057977 -15815192 + L1MA8 LINE L1 5504 6279 -12 230 0 33 0 chr13 86058026 86058056 -15815113 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2330 85 0 30 chr13 86058058 86058363 -15814806 + AluY SINE Alu 1 296 -15 2164 115 0 13 chr13 86059765 86060070 -15813099 - AluSx SINE Alu -11 301 1 225 0 0 0 chr13 86060439 86060464 -15812705 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 247 312 61 44 chr13 86060694 86060989 -15812180 - HAL1 LINE L1 -7 2500 2201 288 171 26 6 chr13 86061618 86061691 -15811478 + AluY SINE Alu 134 172 -129 210 71 0 0 chr13 86061691 86061719 -15811450 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1786 164 10 10 chr13 86061773 86062065 -15811104 - AluJb SINE Alu -20 292 1 2073 107 17 3 chr13 86062660 86062959 -15810210 + AluSg SINE Alu 1 303 -7 198 0 0 0 chr13 86064103 86064125 -15809044 + (A)n Simple_repeat Simple_repeat 1 22 0 917 76 31 0 chr13 86064710 86064854 -15808315 - L1P5 LINE L1 -699 5457 5302 1143 151 0 44 chr13 86064861 86065066 -15808103 - AluJo SINE Alu -30 282 87 743 152 65 0 chr13 86065066 86065204 -15807965 - L1 LINE L1 -815 5331 5185 235 170 19 0 chr13 86065698 86065751 -15807418 + (TTTAA)n Simple_repeat Simple_repeat 4 57 0 368 163 93 23 chr13 86067386 86067472 -15805697 + L1MC4 LINE L1 7950 8041 -1 319 191 44 0 chr13 86069444 86069512 -15803657 + MLT1K LTR MaLR 518 588 0 2203 112 10 0 chr13 86070414 86070709 -15802460 - AluSx SINE Alu -14 298 1 368 263 197 76 chr13 86071093 86071896 -15801273 + L2 LINE L2 1881 2780 -534 3206 140 88 40 chr13 86071902 86072310 -15800859 - L1MB7 LINE L1 0 6184 5730 2536 64 0 13 chr13 86072310 86072624 -15800545 - AluY SINE Alu -1 310 1 3206 140 88 40 chr13 86072624 86072871 -15800298 - L1MB7 LINE L1 -454 5730 5497 515 307 89 11 chr13 86073000 86073179 -15799990 + L2 LINE L2 3080 3272 0 232 212 0 61 chr13 86074032 86074098 -15799071 + L1ME4a LINE L1 6060 6121 0 1933 173 0 0 chr13 86074108 86074415 -15798754 - AluJo SINE Alu -1 311 5 688 212 97 90 chr13 86075853 86076174 -15796995 - MER5C DNA MER1_type 0 324 2 216 264 25 32 chr13 86077802 86077902 -15795267 + L2 LINE L2 2888 2984 -329 258 279 62 78 chr13 86078021 86078150 -15795019 + L2 LINE L2 3129 3255 -17 26 50 0 0 chr13 86078763 86078803 -15794366 + AT_rich Low_complexity Low_complexity 1 40 0 2018 109 17 7 chr13 86080549 86080851 -15792318 + AluSx SINE Alu 1 305 -7 290 310 90 21 chr13 86081798 86081943 -15791226 + MIR3 SINE MIR 30 184 -24 217 286 24 48 chr13 86082138 86082222 -15790947 + MIR SINE MIR 78 159 -103 461 259 28 42 chr13 86082797 86082940 -15790229 - MIR SINE MIR -3 259 119 7646 127 45 15 chr13 86083229 86083394 -15789775 - Tigger2 DNA MER2_type 0 2718 2560 1603 180 24 0 chr13 86083394 86083683 -15789486 - AluJb SINE Alu -16 296 1 7646 127 45 15 chr13 86083683 86084747 -15788422 - Tigger2 DNA MER2_type -158 2560 1451 3138 118 23 45 chr13 86084747 86084966 -15788203 + LTR35 LTR ERV1 1 223 -395 1721 172 31 3 chr13 86084966 86085257 -15787912 + AluJb SINE Alu 1 299 -13 3138 118 23 45 chr13 86085257 86085564 -15787605 + LTR35 LTR ERV1 223 515 -103 293 116 58 0 chr13 86085564 86085633 -15787536 + CT-rich Low_complexity Low_complexity 1 73 0 623 172 82 16 chr13 86085636 86085758 -15787411 + LTR35 LTR ERV1 489 618 0 6255 115 25 8 chr13 86085759 86086692 -15786477 - Tigger2 DNA MER2_type -1265 1453 506 2381 118 71 15 chr13 86086692 86087100 -15786069 + LTR23 LTR ERV1 2 432 -5 2948 134 49 12 chr13 86087104 86087597 -15785572 - Tigger2 DNA MER2_type -2207 511 1 1725 143 16 42 chr13 86087603 86087910 -15785259 - AluJo SINE Alu -11 301 3 249 173 19 0 chr13 86088994 86089046 -15784123 - L2 LINE L2 -1 3271 3219 180 0 0 0 chr13 86089103 86089123 -15784046 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2096 119 191 8 chr13 86089483 86089845 -15783324 + MSTA LTR MaLR 1 428 0 680 235 47 11 chr13 86089899 86090163 -15783006 + MLT1I LTR MaLR 1 366 -43 452 164 73 0 chr13 86091086 86091196 -15781973 - L1ME4a LINE L1 -14 6107 5990 188 330 58 0 chr13 86091553 86091656 -15781513 + MIR SINE MIR 9 117 -145 388 286 66 38 chr13 86091748 86091961 -15781208 - MIR SINE MIR -10 252 34 2301 111 0 0 chr13 86092005 86092302 -15780867 + AluSx SINE Alu 1 297 -15 1505 173 75 7 chr13 86094202 86094480 -15778689 + AluJo SINE Alu 1 297 -15 2264 96 0 3 chr13 86094483 86094774 -15778395 + AluSq SINE Alu 1 290 -23 309 26 0 0 chr13 86094781 86094819 -15778350 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 188 327 39 10 chr13 86094851 86094955 -15778214 - MIR3 SINE MIR -31 177 71 604 297 11 0 chr13 86094957 86095158 -15778011 - MIR SINE MIR -30 232 30 2269 117 0 0 chr13 86095222 86095520 -15777649 + AluSx SINE Alu 3 300 -12 463 243 72 43 chr13 86095652 86095887 -15777282 + L1MC5 LINE L1 7670 7911 -50 200 186 0 68 chr13 86098071 86098130 -15775039 + G-rich Low_complexity Low_complexity 5 59 0 255 196 29 65 chr13 86100659 86100797 -15772372 + (CGGGG)n Simple_repeat Simple_repeat 3 135 0 324 0 0 0 chr13 86102668 86102704 -15770465 + (TG)n Simple_repeat Simple_repeat 2 37 0 1939 154 114 13 chr13 86102705 86103153 -15770016 - LTR54B LTR ERV1 -3 495 3 1636 213 67 33 chr13 86103495 86103650 -15769519 + MLT1C LTR MaLR 1 149 -318 270 0 0 0 chr13 86103650 86103680 -15769489 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1582 106 126 24 chr13 86103681 86103935 -15769234 - AluSx SINE Alu -32 280 1 1636 213 67 33 chr13 86103935 86104227 -15768942 + MLT1C LTR MaLR 148 465 -2 1804 174 0 3 chr13 86104853 86105157 -15768012 - AluJo SINE Alu -9 303 1 21 0 0 0 chr13 86105423 86105444 -15767725 + GC_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr13 86105826 86105874 -15767295 + GC_rich Low_complexity Low_complexity 1 48 0 421 135 81 0 chr13 86106141 86106215 -15766954 + MADE1 DNA Mariner 1 80 0 226 225 9 126 chr13 86106551 86106662 -15766507 - MER5A DNA MER1_type -83 106 9 524 230 55 49 chr13 86106742 86107607 -15765562 + L1MD3 LINE L1 5313 6142 -1666 2379 87 3 0 chr13 86107607 86107906 -15765263 + AluSx SINE Alu 1 300 -12 524 230 55 49 chr13 86107906 86108374 -15764795 + L1MD3 LINE L1 6142 6606 -1202 2180 105 3 7 chr13 86108430 86108726 -15764443 + AluY SINE Alu 1 295 -16 656 183 9 0 chr13 86108775 86108890 -15764279 - MER63 DNA MER1_type -94 742 1 949 264 19 0 chr13 86108890 86109102 -15764067 + L1MC4 LINE L1 6671 6886 -1156 799 305 81 40 chr13 86109504 86109924 -15763245 + LTR16A LTR ERVL 14 450 0 301 253 56 94 chr13 86110045 86110171 -15762998 + L1MEc LINE L1 1384 1513 -994 2362 97 6 3 chr13 86110171 86110482 -15762687 + AluSx SINE Alu 1 312 0 301 253 56 94 chr13 86110482 86110605 -15762564 + L1MEc LINE L1 1513 1644 -863 259 279 36 9 chr13 86110662 86110773 -15762396 + L1MEc LINE L1 3400 3513 -2633 2318 194 16 4 chr13 86110776 86111267 -15761902 + L1MEc LINE L1 4215 4711 -1435 737 181 22 29 chr13 86111267 86111405 -15761764 + AluJo SINE Alu 2 138 -174 2469 63 3 19 chr13 86111405 86111720 -15761449 + AluY SINE Alu 2 311 0 1408 164 0 22 chr13 86111737 86111968 -15761201 + AluJb SINE Alu 1 226 -86 1763 183 69 46 chr13 86111974 86112216 -15760953 + L1MEc LINE L1 4709 4944 -1202 1841 172 7 7 chr13 86112216 86112519 -15760650 + AluJo SINE Alu 1 303 -9 1763 183 69 46 chr13 86112519 86112757 -15760412 + L1MEc LINE L1 4944 5200 -946 2439 98 0 3 chr13 86112758 86113065 -15760104 + AluSx SINE Alu 1 306 -6 1356 209 26 0 chr13 86113068 86113336 -15759833 + L1MB7 LINE L1 5780 6054 -130 2423 98 0 0 chr13 86113457 86113477 -15759692 - AluSx SINE Alu -6 306 287 213 65 0 0 chr13 86113477 86113508 -15759661 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2423 98 0 0 chr13 86113508 86113793 -15759376 - AluSx SINE Alu -24 288 1 870 211 300 18 chr13 86114126 86114534 -15758635 - MLT2B1 LTR ERVL 0 520 1 2099 134 0 0 chr13 86114535 86114825 -15758344 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr13 86115062 86115083 -15758086 + AT_rich Low_complexity Low_complexity 1 21 0 1559 158 28 14 chr13 86115145 86115436 -15757733 + L1MB3 LINE L1 5887 6181 -2 2565 51 0 22 chr13 86115447 86115758 -15757411 + AluY SINE Alu 1 304 -7 22 35 0 0 chr13 86115758 86115787 -15757382 + AT_rich Low_complexity Low_complexity 1 29 0 1604 242 86 17 chr13 86115889 86116481 -15756688 - MER69 DNA AcHobo -3 2523 1891 1296 183 106 29 chr13 86116483 86116718 -15756451 + AluJo SINE Alu 1 261 -51 2898 64 11 16 chr13 86116718 86117095 -15756074 - THE1C LTR MaLR 0 375 1 1296 183 106 29 chr13 86117095 86117132 -15756037 + AluJo SINE Alu 261 294 -18 1342 222 18 57 chr13 86117140 86117203 -15755966 - MER69 DNA AcHobo -626 1900 1836 1933 161 3 0 chr13 86117203 86117502 -15755667 - AluJo SINE Alu -12 300 1 1342 222 18 57 chr13 86117502 86117819 -15755350 - MER69 DNA AcHobo -690 1836 1538 1947 100 75 4 chr13 86117819 86118100 -15755069 + AluSx SINE Alu 1 301 -11 1342 222 18 57 chr13 86118100 86118173 -15754996 - MER69 DNA AcHobo -988 1538 1464 541 242 23 8 chr13 86118222 86118354 -15754815 - MER69 DNA AcHobo -2333 193 60 2753 86 31 9 chr13 86119250 86119796 -15753373 - MER51A LTR ERV1 0 634 1 185 241 203 13 chr13 86119902 86119981 -15753188 + MIR3 SINE MIR 110 203 -5 1445 208 31 0 chr13 86120245 86120538 -15752631 - MER58B DNA MER1_type 0 341 40 3774 208 40 9 chr13 86120538 86121382 -15751787 + L1MB7 LINE L1 4576 5472 -712 1414 163 104 31 chr13 86121382 86121671 -15751498 + AluJo SINE Alu 1 310 -2 3774 208 40 9 chr13 86121671 86122338 -15750831 + L1MB7 LINE L1 5472 6117 -67 259 268 0 41 chr13 86122343 86122440 -15750729 + L1M4 LINE L1 3029 3121 -3025 1286 177 150 0 chr13 86122444 86122704 -15750465 + AluJo SINE Alu 1 299 -3 556 185 23 23 chr13 86122735 86122908 -15750261 + GA-rich Low_complexity Low_complexity 3 175 0 852 163 0 0 chr13 86122919 86123072 -15750097 + GA-rich Low_complexity Low_complexity 3 155 0 1989 214 62 96 chr13 86123084 86123257 -15749912 + L1M4 LINE L1 2766 2943 -3203 2461 75 3 0 chr13 86123257 86123563 -15749606 + AluY SINE Alu 2 308 -3 1989 214 62 96 chr13 86123563 86123717 -15749452 + L1M4 LINE L1 2943 3101 -3045 1696 171 48 3 chr13 86123717 86124010 -15749159 + AluJb SINE Alu 1 306 -6 1989 214 62 96 chr13 86124010 86124371 -15748798 + L1M4 LINE L1 3101 3420 -2726 2140 114 0 11 chr13 86124371 86124687 -15748482 + AluSg SINE Alu 2 314 0 1989 214 62 96 chr13 86124687 86124912 -15748257 + L1M4 LINE L1 3420 3651 -2495 1647 175 3 39 chr13 86124949 86125257 -15747912 + AluJo SINE Alu 14 310 -2 855 284 32 18 chr13 86125360 86125638 -15747531 - HsTC2b DNA Tc2 -611 304 23 23 68 0 0 chr13 86125853 86125897 -15747272 + AT_rich Low_complexity Low_complexity 1 44 0 2421 96 0 0 chr13 86126509 86126812 -15746357 - AluSq SINE Alu -10 303 1 246 203 51 0 chr13 86126873 86126932 -15746237 + MER20B DNA MER1_type 70 131 -652 275 231 113 131 chr13 86126943 86127103 -15746066 + MER91A DNA MER1_type 6 162 -34 247 255 128 21 chr13 86127170 86127264 -15745905 + MER20B DNA MER1_type 126 229 -554 378 0 0 0 chr13 86127264 86127306 -15745863 + (A)n Simple_repeat Simple_repeat 1 42 0 335 164 0 0 chr13 86127344 86127399 -15745770 + MER20B DNA MER1_type 239 293 -490 3250 232 34 25 chr13 86127443 86128380 -15744789 - L1MD2 LINE L1 -236 6123 5177 1750 170 24 0 chr13 86128380 86128674 -15744495 + AluJo SINE Alu 2 302 -10 2509 49 0 0 chr13 86128704 86128992 -15744177 - AluY SINE Alu -22 289 2 403 91 61 0 chr13 86129017 86129083 -15744086 + Alu SINE Alu 240 309 -3 814 237 136 23 chr13 86129083 86129141 -15744028 - L1MD2 LINE L1 -961 5185 5135 2150 119 3 3 chr13 86129141 86129436 -15743733 + AluSx SINE Alu 1 295 -17 814 237 136 23 chr13 86129436 86129685 -15743484 - L1MD2 LINE L1 -1011 5135 4843 1571 99 51 123 chr13 86129787 86130119 -15743050 + L1PB3 LINE L1 5847 6154 0 7679 20 1 1 chr13 86130576 86131458 -15741711 + L1PA3 LINE L1 5274 6155 0 210 71 0 0 chr13 86131789 86131817 -15741352 + (A)n Simple_repeat Simple_repeat 1 28 0 722 238 43 24 chr13 86132005 86132215 -15740954 + MER20B DNA MER1_type 276 489 -294 2323 105 3 0 chr13 86132247 86132552 -15740617 - AluY SINE Alu -5 306 1 857 62 0 0 chr13 86132552 86132649 -15740520 - AluSq/x SINE Alu -178 135 39 1971 120 7 0 chr13 86132652 86132926 -15740243 - AluSx SINE Alu -20 292 17 30 69 0 0 chr13 86132940 86132998 -15740171 + AT_rich Low_complexity Low_complexity 1 58 0 436 191 48 20 chr13 86133011 86133158 -15740011 + MER20B DNA MER1_type 536 686 -97 471 236 73 0 chr13 86133249 86133359 -15739810 - MLT1H1 LTR MaLR -281 274 157 1974 189 93 30 chr13 86133359 86133820 -15739349 - LTR2B LTR ERV1 0 490 1 435 242 111 7 chr13 86134373 86134526 -15738643 - MER5B DNA MER1_type -4 174 6 1938 114 56 88 chr13 86134701 86135000 -15738169 + THE1B LTR MaLR 1 287 -77 2511 46 3 7 chr13 86135000 86135307 -15737862 - AluY SINE Alu -5 306 1 1938 114 56 88 chr13 86135307 86135383 -15737786 + THE1B LTR MaLR 287 364 0 1578 185 46 0 chr13 86137509 86137790 -15735379 - AluJo SINE Alu -18 294 1 1356 252 61 30 chr13 86139085 86139478 -15733691 + LTR16C LTR ERVL 62 466 -25 206 156 0 89 chr13 86139489 86139534 -15733635 + L2 LINE L2 3254 3294 -19 213 303 0 0 chr13 86139558 86139624 -15733545 + L3 LINE CR1 1488 1553 -24 2551 65 7 0 chr13 86140754 86141060 -15732109 + AluSc SINE Alu 1 308 -1 3600 84 58 11 chr13 86141078 86141614 -15731555 + L1PB2 LINE L1 5591 6151 0 958 94 71 0 chr13 86142446 86142573 -15730596 + AluSq/x SINE Alu 1 136 -176 1753 62 0 5 chr13 86142573 86142781 -15730388 + AluSg SINE Alu 1 207 -103 4109 168 15 25 chr13 86142781 86143546 -15729623 + L1MC1 LINE L1 4640 5381 -952 2033 107 7 37 chr13 86143546 86143844 -15729325 + AluSx SINE Alu 3 291 -21 4109 168 15 25 chr13 86143844 86144430 -15728739 + L1MC1 LINE L1 5381 5972 -361 2386 151 69 5 chr13 86144432 86144850 -15728319 - Tigger2 DNA MER2_type -1 2717 2273 362 194 15 0 chr13 86144840 86144907 -15728262 - Tigger2 DNA MER2_type -2649 69 2 * 1995 154 55 6 chr13 86144908 86145252 -15727917 + L1MC1 LINE L1 5972 6332 -1 2047 141 119 3 chr13 86145512 86145881 -15727288 - MLT2D LTR ERVL -2 412 1 2342 176 87 15 chr13 86146161 86146632 -15726537 + MLT1D LTR MaLR 1 505 0 2070 136 0 19 chr13 86146689 86146998 -15726171 + AluSx SINE Alu 1 303 -9 401 186 0 39 chr13 86147661 86147763 -15725406 - L1MDa LINE L1 -4997 1543 1446 562 202 107 116 chr13 86149710 86149943 -15723226 + MLT1E LTR MaLR 1 231 -362 2275 99 10 0 chr13 86149947 86150241 -15722928 + AluSx SINE Alu 1 297 -15 1066 162 0 22 chr13 86150243 86150428 -15722741 + AluJo/FRAM SINE Alu 131 311 -1 1046 235 51 65 chr13 86150433 86150786 -15722383 + MLT1E LTR MaLR 231 578 -15 937 119 0 15 chr13 86152078 86152212 -15720957 - FLAM_C SINE Alu -1 132 1 516 196 72 26 chr13 86152353 86152506 -15720663 + Charlie2 DNA MER1_type 164 323 -2539 * 1269 211 69 13 chr13 86152504 86152883 -15720286 + Charlie2 DNA MER1_type 1856 2255 -607 2555 53 0 0 chr13 86152883 86153186 -15719983 - AluY SINE Alu -8 303 1 1678 111 81 0 chr13 86153186 86153447 -15719722 - MER4B LTR ERV1 -328 282 1 2438 121 12 58 chr13 86153447 86153860 -15719309 - MER4B-int LTR ERV1 0 6758 6365 2080 83 52 3 chr13 86153924 86154212 -15718957 - AluSx SINE Alu -10 302 1 4489 136 28 36 chr13 86154216 86154972 -15718197 - MER4B-int LTR ERV1 -427 6331 5582 401 80 0 0 chr13 86154969 86155019 -15718150 - MER4B-int LTR ERV1 -2784 3974 3925 * 1161 128 0 0 chr13 86155171 86155327 -15717842 - AluSp SINE Alu -19 294 139 4608 134 71 49 chr13 86155327 86156326 -15716843 + MER11B LTR ERVK 1 997 -74 1022 127 0 0 chr13 86156355 86156497 -15716672 - AluSq/x SINE Alu -170 142 1 1414 176 9 14 chr13 86156498 86156803 -15716366 - L1ME2 LINE L1 -144 6022 5723 1534 241 83 31 chr13 86156807 86156850 -15716319 + Charlie2 DNA MER1_type 2252 2291 -571 2200 116 0 7 chr13 86156850 86157152 -15716017 + AluSq SINE Alu 1 300 -13 1534 241 83 31 chr13 86157152 86157689 -15715480 + Charlie2 DNA MER1_type 2291 2862 0 1061 223 125 22 chr13 86157721 86158152 -15715017 - MLT1G LTR MaLR 0 530 54 1352 217 97 43 chr13 86158152 86158595 -15714574 + MLT1C LTR MaLR 1 467 0 1061 223 125 22 chr13 86158595 86158656 -15714513 - MLT1G LTR MaLR -476 54 1 1923 160 3 10 chr13 86158815 86159127 -15714042 + AluJb SINE Alu 1 310 -2 2387 110 0 0 chr13 86159753 86160061 -15713108 - AluSg SINE Alu -2 308 1 212 325 65 8 chr13 86160246 86160369 -15712800 + L2 LINE L2 3160 3289 -24 2040 132 7 7 chr13 86160688 86160984 -15712185 + AluSx SINE Alu 1 296 -16 207 244 69 76 chr13 86160993 86161124 -15712045 - MIR SINE MIR -63 145 28 1419 207 46 21 chr13 86161511 86161883 -15711286 - MLT1C LTR MaLR -35 432 52 1281 120 104 33 chr13 86161921 86162162 -15711007 - MLT1B LTR MaLR -132 258 1 2233 122 3 0 chr13 86162288 86162584 -15710585 - AluSx SINE Alu -15 297 1 21 36 0 0 chr13 86162584 86162612 -15710557 + AT_rich Low_complexity Low_complexity 1 28 0 501 304 62 37 chr13 86162823 86162990 -15710179 + MIR SINE MIR 14 190 -72 1652 185 7 17 chr13 86162990 86163277 -15709892 - AluJo SINE Alu -26 286 3 501 304 62 37 chr13 86163277 86163352 -15709817 + MIR SINE MIR 190 262 0 1494 112 0 0 chr13 86163390 86163586 -15709583 - AluSg/x SINE Alu -30 280 85 2183 125 0 3 chr13 86163729 86164032 -15709137 - AluSx SINE Alu -10 302 1 783 277 131 45 chr13 86164142 86164767 -15708402 - L1MC4a LINE L1 -1754 6054 5355 2278 114 0 0 chr13 86164767 86165074 -15708095 + AluSx SINE Alu 1 307 -5 783 277 131 45 chr13 86165074 86165180 -15707989 - L1MC4a LINE L1 -2453 5355 5260 387 310 11 69 chr13 86165308 86165582 -15707587 - L2 LINE L2 -681 2633 2376 603 0 0 0 chr13 86166412 86166479 -15706690 + (TATTG)n Simple_repeat Simple_repeat 1 67 0 709 203 0 0 chr13 86166492 86166615 -15706554 - FLAM_C SINE Alu -19 124 2 24 32 0 0 chr13 86167350 86167381 -15705788 + AT_rich Low_complexity Low_complexity 1 31 0 660 248 91 80 chr13 86167580 86167955 -15705214 + MLT1F LTR MaLR 91 469 -73 2103 113 0 0 chr13 86168731 86169006 -15704163 + AluSx SINE Alu 1 275 -37 247 25 50 0 chr13 86169012 86169052 -15704117 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1984 138 40 0 chr13 86169272 86169568 -15703601 + AluSx SINE Alu 1 308 -4 1165 224 35 0 chr13 86169609 86169863 -15703306 + AluJo SINE Alu 34 296 -16 2454 83 0 3 chr13 86169893 86170205 -15702964 + AluY SINE Alu 1 311 0 2325 104 0 0 chr13 86170221 86170520 -15702649 + AluY SINE Alu 1 299 -12 613 331 30 15 chr13 86170520 86170789 -15702380 - LTR16A LTR ERVL -118 332 60 294 203 156 0 chr13 86170818 86170921 -15702248 + MLT1I LTR MaLR 325 409 0 5454 149 28 39 chr13 86171052 86171287 -15701882 - L1MA8 LINE L1 -1 6290 6054 1626 167 41 31 chr13 86171287 86171580 -15701589 + AluJo SINE Alu 1 296 -16 5454 149 28 39 chr13 86171580 86171777 -15701392 - L1MA8 LINE L1 -237 6054 5856 3427 156 0 6 chr13 86171777 86172303 -15700866 - MER1A DNA MER1_type 0 527 5 5454 149 28 39 chr13 86172303 86172422 -15700747 - L1MA8 LINE L1 -435 5856 5737 338 0 24 0 chr13 86172422 86172464 -15700705 + (TG)n Simple_repeat Simple_repeat 2 44 0 1722 160 7 7 chr13 86172470 86172752 -15700417 - AluJo SINE Alu -30 282 1 5454 149 28 39 chr13 86172752 86173197 -15699972 - L1MA8 LINE L1 -559 5732 5292 2289 90 30 0 chr13 86173197 86173497 -15699672 - AluSx SINE Alu -3 309 1 5454 149 28 39 chr13 86173497 86173819 -15699350 - L1MA8 LINE L1 -999 5292 4968 543 300 88 9 chr13 86175066 86175386 -15697783 - L2 LINE L2 -2 3311 2967 327 306 53 60 chr13 86175384 86175665 -15697504 - L2 LINE L2 -1047 2267 1989 * 236 291 88 28 chr13 86175745 86175927 -15697242 + L1M4 LINE L1 4996 5188 -958 1654 189 39 19 chr13 86175932 86176095 -15697074 + 7SLRNA srpRNA srpRNA 6 179 -141 2749 99 6 0 chr13 86176095 86176457 -15696712 - THE1B LTR MaLR 0 364 1 1654 189 39 19 chr13 86176457 86176600 -15696569 + 7SLRNA srpRNA srpRNA 179 318 -2 1524 158 118 7 chr13 86176628 86176900 -15696269 + AluJo SINE Alu 1 302 0 1327 155 126 29 chr13 86178074 86178352 -15694817 + AluJo SINE Alu 1 305 -7 2488 50 3 0 chr13 86178354 86178656 -15694513 + AluY SINE Alu 1 303 -8 2230 144 20 26 chr13 86178701 86178738 -15694431 + MLT1B LTR MaLR 3 39 -351 1821 134 20 7 chr13 86178738 86179030 -15694139 + AluJo SINE Alu 2 297 -15 2230 144 20 26 chr13 86179030 86179382 -15693787 + MLT1B LTR MaLR 39 390 0 313 256 105 0 chr13 86179491 86179577 -15693592 - MER58 DNA MER1_type -1 2419 2325 2682 125 27 57 chr13 86179609 86179762 -15693407 + L1MB4 LINE L1 5684 5840 -340 1938 144 0 3 chr13 86179762 86180061 -15693108 + AluSx SINE Alu 2 299 -13 2682 125 27 57 chr13 86180061 86180419 -15692750 + L1MB4 LINE L1 5840 6180 0 1671 111 0 0 chr13 86180462 86180688 -15692481 + AluSx SINE Alu 40 265 -47 8227 57 19 1 chr13 86181523 86183352 -15689817 - L1PA6 LINE L1 -5 6149 4301 257 31 0 0 chr13 86183394 86183426 -15689743 - L1PA6 LINE L1 -2447 3699 3668 * 30418 94 10 18 chr13 86183411 86184905 -15688264 - L1P LINE L1 -1820 4326 2821 2050 96 14 17 chr13 86184905 86185198 -15687971 - AluY SINE Alu -17 294 3 30418 94 10 18 chr13 86185198 86186022 -15687147 - L1P LINE L1 -3325 2821 1992 2439 70 0 6 chr13 86186022 86186335 -15686834 - AluY SINE Alu 0 311 1 30418 94 10 18 chr13 86186335 86188367 -15684802 - L1P LINE L1 -4154 1992 11 900 181 0 13 chr13 86188776 86188931 -15684238 + FRAM SINE Alu 1 153 -23 990 244 104 46 chr13 86189500 86189894 -15683275 + MLT1J LTR MaLR 4 420 -91 423 246 112 65 chr13 86190105 86190311 -15682858 + L1MC4 LINE L1 7407 7602 -440 604 160 35 28 chr13 86190311 86190415 -15682754 + L1PA12 LINE L1 6015 6117 -51 2038 122 0 6 chr13 86190415 86190727 -15682442 + AluSg SINE Alu 1 310 0 604 160 35 28 chr13 86190727 86190750 -15682419 + L1PA12 LINE L1 6117 6146 -22 1719 121 12 0 chr13 86190750 86191006 -15682163 + AluSq SINE Alu 49 307 -6 604 160 35 28 chr13 86191006 86191021 -15682148 + L1PA12 LINE L1 6146 6159 -9 423 246 112 65 chr13 86191021 86191074 -15682095 + L1MC4 LINE L1 7602 7678 -364 376 280 57 11 chr13 86191671 86191846 -15681323 + MIR SINE MIR 4 186 -76 2467 39 13 0 chr13 86192124 86192483 -15680686 - AluY SINE Alu 0 363 1 2127 114 19 3 chr13 86192601 86192908 -15680261 - AluSx SINE Alu 0 312 1 1882 214 21 5 chr13 86192929 86193358 -15679811 - L1MB3 LINE L1 -6 6177 5742 473 213 205 1 chr13 86193558 86193798 -15679371 + LTR50 LTR ERVL 3 317 -478 771 197 137 53 chr13 86193849 86193922 -15679247 + LTR50 LTR ERVL 485 550 -245 1983 123 3 19 chr13 86193922 86194230 -15678939 - AluSq SINE Alu -10 303 1 771 197 137 53 chr13 86194230 86194440 -15678729 + LTR50 LTR ERVL 550 792 -3 1092 212 118 41 chr13 86194447 86194786 -15678383 + MLT1A1 LTR MaLR 1 365 0 225 330 0 45 chr13 86194849 86194961 -15678208 + L2 LINE L2 1366 1472 -1842 1832 130 0 30 chr13 86195107 86195407 -15677762 - AluJb SINE Alu -21 291 1 1835 157 6 22 chr13 86195653 86196004 -15677165 - MER4A LTR ERV1 0 664 261 556 111 89 0 chr13 86196004 86196094 -15677075 - MER4A LTR ERV1 -566 98 1 2171 114 0 0 chr13 86196103 86196402 -15676767 - AluSx SINE Alu -13 299 1 15831 111 64 31 chr13 86196409 86198396 -15674773 - MER4A-int LTR ERV1 -2 6596 4676 2319 79 13 0 chr13 86198396 86198701 -15674468 - AluY SINE Alu 0 311 3 15831 111 64 31 chr13 86198701 86199872 -15673297 - MER4A-int LTR ERV1 -1922 4676 1862 1508 132 62 4 chr13 86199872 86200115 -15673054 + LTR8 LTR ERV1 1 257 -434 4090 70 88 43 chr13 86200115 86200806 -15672363 - MER4A-int LTR ERV1 -4103 2495 1774 2109 98 11 0 chr13 86200811 86201097 -15672072 + AluSg SINE Alu 1 289 -21 1419 82 9 150 chr13 86201098 86201433 -15671736 - MER4A-int LTR ERV1 -4266 1284 503 2920 89 136 44 chr13 86201442 86201563 -15671606 - MER4A-int LTR ERV1 -6021 577 469 2303 71 7 3 chr13 86201563 86201873 -15671296 - AluY SINE Alu 0 311 1 2920 89 136 44 chr13 86201873 86202279 -15670890 - MER4A-int LTR ERV1 -6129 469 1 1653 146 165 73 chr13 86202282 86202652 -15670517 - MER4A LTR ERV1 0 664 261 1994 102 0 0 chr13 86202672 86202946 -15670223 + AluSg SINE Alu 1 274 -36 228 35 0 0 chr13 86202950 86202979 -15670190 + (TAA)n Simple_repeat Simple_repeat 1 29 0 751 175 6 36 chr13 86202980 86203146 -15670023 + L1MC3 LINE L1 7625 7785 0 2354 84 3 0 chr13 86203154 86203462 -15669707 + AluSp SINE Alu 1 309 -4 247 287 35 23 chr13 86203493 86203580 -15669589 + MER5A DNA MER1_type 101 188 -1 2240 94 10 0 chr13 86203591 86203898 -15669271 + AluSq SINE Alu 1 310 -3 2113 119 0 10 chr13 86203943 86204254 -15668915 + AluSc SINE Alu 1 308 -1 315 234 30 108 chr13 86204578 86204638 -15668531 + Charlie8 DNA MER1_type 355 418 -1999 2098 111 0 0 chr13 86204638 86204927 -15668242 + AluSx SINE Alu 1 289 -23 315 234 30 108 chr13 86204927 86205033 -15668136 + Charlie8 DNA MER1_type 418 508 -1909 275 249 224 24 chr13 86206218 86206383 -15666786 + L3b LINE CR1 1102 1299 -284 1979 115 26 164 chr13 86207225 86207677 -15665492 + Tigger3(Golem) DNA MER2_type 2590 2979 -50 452 283 47 68 chr13 86207743 86207934 -15665235 + LTR16C LTR ERVL 1 187 -304 311 233 0 17 chr13 86207941 86208001 -15665168 + LTR16C LTR ERVL 433 491 0 188 250 18 18 chr13 86208101 86208157 -15665012 + L2 LINE L2 2935 2990 -323 1557 147 7 48 chr13 86208202 86208495 -15664674 + AluJb SINE Alu 1 281 -31 1363 208 65 0 chr13 86208510 86208789 -15664380 - MLT1A1 LTR MaLR -68 297 1 368 259 177 41 chr13 86208789 86209032 -15664137 - MER20B DNA MER1_type -507 276 1 1626 163 6 22 chr13 86209079 86209392 -15663777 - AluJo SINE Alu -4 308 1 1660 208 72 36 chr13 86209810 86210228 -15662941 + MER31B LTR ERV1 1 433 -33 2007 141 84 24 chr13 86210228 86210541 -15662628 + THE1C LTR MaLR 1 294 -134 2230 84 3 0 chr13 86210541 86210837 -15662332 + AluSq SINE Alu 1 297 -16 2442 43 0 13 chr13 86210839 86211140 -15662029 + AluY SINE Alu 1 297 -14 2007 141 84 24 chr13 86211140 86211215 -15661954 + THE1C LTR MaLR 294 428 0 227 236 83 0 chr13 86211215 86211254 -15661915 + MER31A LTR ERV1 440 484 -1 930 156 54 85 chr13 86212199 86212423 -15660746 - MER20 DNA MER1_type -1 218 2 500 261 157 7 chr13 86212428 86212581 -15660588 - MER5A DNA MER1_type -1 188 13 2571 171 45 72 chr13 86212793 86213083 -15660086 - Charlie1 DNA MER1_type -3 2758 2462 1776 166 3 0 chr13 86213083 86213379 -15659790 - AluSx SINE Alu -14 298 2 2571 171 45 72 chr13 86213379 86213750 -15659419 - Charlie1 DNA MER1_type -299 2462 2115 466 152 101 10 chr13 86213818 86213917 -15659252 - Charlie1 DNA MER1_type -2608 153 46 2027 95 17 0 chr13 86214038 86214333 -15658836 + AluSg SINE Alu 1 300 -10 232 255 174 0 chr13 86214421 86214519 -15658650 + L2 LINE L2 3146 3260 -12 1814 167 30 3 chr13 86214598 86214928 -15658241 - L1MA6 LINE L1 -22 6278 5940 2530 39 0 7 chr13 86216705 86217010 -15656159 + AluY SINE Alu 1 303 -8 322 259 139 9 chr13 86217721 86217829 -15655340 - L2 LINE L2 -6 3307 3186 1986 98 18 0 chr13 86217924 86218243 -15654926 - AluSq SINE Alu 0 313 9 448 311 178 28 chr13 86218471 86218792 -15654377 - L2 LINE L2 -2 3311 2943 202 353 121 40 chr13 86219405 86219812 -15653357 - L2 LINE L2 -1158 2156 1691 2144 112 0 0 chr13 86219812 86220115 -15653054 - AluSc SINE Alu -4 305 3 202 353 121 40 chr13 86220115 86220263 -15652906 - L2 LINE L2 -1623 1691 1556 220 385 0 18 chr13 86220351 86220460 -15652709 - MER5A DNA MER1_type -22 167 61 1107 81 0 182 chr13 86220624 86220860 -15652309 + 7SK RNA RNA 1 193 0 273 301 182 39 chr13 86220869 86221308 -15651861 - L2 LINE L2 -767 2547 2046 184 305 102 0 chr13 86222189 86222248 -15650921 + MIR SINE MIR 179 243 -19 2250 87 3 0 chr13 86222909 86223208 -15649961 - AluSp SINE Alu -9 304 5 274 309 10 31 chr13 86223301 86223398 -15649771 - L2 LINE L2 0 3313 3219 2066 80 33 20 chr13 86224607 86224908 -15648261 + AluSq SINE Alu 1 305 -8 2240 103 3 0 chr13 86225380 86225692 -15647477 - AluSp SINE Alu 0 313 1 991 104 0 0 chr13 86225693 86225827 -15647342 - AluSq/x SINE Alu -179 134 1 339 233 50 42 chr13 86225932 86226052 -15647117 - L1MC/D LINE L1 -2166 5642 5522 536 301 70 21 chr13 86226073 86226259 -15646910 - MIR SINE MIR -64 198 4 939 236 72 0 chr13 86226440 86226648 -15646521 - MIR SINE MIR -27 235 13 256 269 97 7 chr13 86227655 86227800 -15645369 - L1ME4a LINE L1 -150 5971 5814 201 39 0 0 chr13 86228009 86228035 -15645134 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 811 154 8 0 chr13 86228136 86228266 -15644903 - AluSq/x SINE Alu -177 135 5 2191 120 3 0 chr13 86228276 86228575 -15644594 - AluSx SINE Alu -12 300 1 2241 110 3 3 chr13 86228735 86229034 -15644135 - AluSx SINE Alu -13 299 1 246 314 98 0 chr13 86229794 86229896 -15643273 - MER113 DNA MER1_type? -16 505 394 636 180 101 129 chr13 86230774 86230998 -15642171 - MER113 DNA MER1_type? -111 410 181 279 0 0 0 chr13 86230998 86231029 -15642140 + (TG)n Simple_repeat Simple_repeat 2 32 0 2073 117 0 10 chr13 86231030 86231320 -15641849 - AluSx SINE Alu -25 287 1 636 180 101 129 chr13 86231320 86231510 -15641659 - MER113 DNA MER1_type? -339 182 6 2426 88 0 0 chr13 86231738 86232046 -15641123 - AluSq SINE Alu -5 308 1 234 220 20 0 chr13 86232803 86232853 -15640316 + Charlie8 DNA MER1_type 2362 2412 -5 21 36 0 0 chr13 86233042 86233070 -15640099 + AT_rich Low_complexity Low_complexity 1 28 0 2472 175 34 40 chr13 86234269 86234395 -15638774 - L1MB7 LINE L1 -47 6137 6012 1631 114 45 0 chr13 86234395 86234615 -15638554 - MER30 DNA MER1_type 0 230 1 2472 175 34 40 chr13 86234615 86235043 -15638126 - L1MB7 LINE L1 -172 6012 5586 598 271 39 43 chr13 86235126 86235333 -15637836 + MIR SINE MIR 31 236 -26 29 47 0 0 chr13 86235865 86235908 -15637261 + AT_rich Low_complexity Low_complexity 1 43 0 796 248 51 12 chr13 86235919 86236173 -15636996 - L1ME4a LINE L1 -238 5883 5620 203 308 0 19 chr13 86236369 86236421 -15636748 + MIR SINE MIR 32 82 -180 360 305 48 12 chr13 86236682 86236849 -15636320 + LTR16C LTR ERVL 319 491 0 269 232 53 32 chr13 86236860 86236955 -15636214 + MIR SINE MIR 92 188 -74 707 312 152 9 chr13 86236966 86237309 -15635860 - L2 LINE L2 -4 3309 2918 195 299 30 0 chr13 86237321 86237388 -15635781 + MIR SINE MIR 194 262 0 4649 214 46 57 chr13 86237559 86238093 -15635076 - L1M4 LINE L1 -2267 3879 3341 735 99 0 0 chr13 86238093 86238194 -15634975 - L1MB3 LINE L1 -3 6180 6080 4649 214 46 57 chr13 86238194 86238958 -15634211 - L1M4 LINE L1 -2805 3341 2595 1647 174 98 43 chr13 86238958 86239326 -15633843 - MLT1B LTR MaLR -2 388 1 4649 214 46 57 chr13 86239326 86239439 -15633730 - L1M4 LINE L1 -3551 2595 2482 365 273 45 68 chr13 86239496 86239716 -15633453 - L1MC4 LINE L1 0 8042 7828 2667 119 22 49 chr13 86240052 86240505 -15632664 - L1MB2 LINE L1 -2 6169 5729 366 314 16 24 chr13 86240538 86240662 -15632507 - L2 LINE L2 -5 3308 3186 473 250 43 29 chr13 86240697 86240837 -15632332 + MER104 DNA Tc2 2 143 -37 1395 336 39 10 chr13 86241177 86241808 -15631361 + L2 LINE L2 2401 3057 -256 2376 95 3 0 chr13 86241832 86242138 -15631031 + AluSp SINE Alu 1 307 -6 948 254 110 32 chr13 86242158 86242504 -15630665 - MLT1I LTR MaLR -21 388 16 472 271 62 43 chr13 86242514 86242724 -15630445 + L2 LINE L2 3098 3311 -2 362 363 30 0 chr13 86242804 86243005 -15630164 - L2 LINE L2 -1966 1348 1142 2279 96 0 20 chr13 86243207 86243509 -15629660 - AluSx SINE Alu -16 296 1 290 189 95 14 chr13 86243524 86243598 -15629571 - MIR SINE MIR -66 196 117 4380 175 52 50 chr13 86244527 86245033 -15628136 - Tigger6a DNA MER2_type -514 1083 579 2034 186 48 78 chr13 86245033 86245097 -15628072 - MLT1D LTR MaLR -4 501 437 2031 129 0 25 chr13 86245097 86245415 -15627754 + AluSx SINE Alu 1 310 -2 2034 186 48 78 chr13 86245415 86245684 -15627485 - MLT1D LTR MaLR -68 437 186 2196 107 3 0 chr13 86245684 86245973 -15627196 + AluSg SINE Alu 1 290 -20 2034 186 48 78 chr13 86245973 86246154 -15627015 - MLT1D LTR MaLR -319 186 1 4380 175 52 50 chr13 86246154 86246322 -15626847 - Tigger6a DNA MER2_type -1018 579 413 2232 122 7 0 chr13 86246322 86246626 -15626543 - AluSx SINE Alu -6 306 1 4380 175 52 50 chr13 86246626 86246946 -15626223 - Tigger6a DNA MER2_type -1184 413 3 765 257 159 83 chr13 86246994 86247555 -15625614 + L1MC4 LINE L1 5954 6471 -1392 1826 134 0 62 chr13 86247555 86247875 -15625294 + AluJb SINE Alu 1 300 -12 765 257 159 83 chr13 86247875 86248027 -15625142 + L1MC4 LINE L1 6471 6610 -1253 2326 107 0 0 chr13 86248027 86248326 -15624843 - AluSg SINE Alu -11 299 1 765 257 159 83 chr13 86248326 86248704 -15624465 + L1MC4 LINE L1 6610 7173 -690 206 32 32 0 chr13 86248878 86248909 -15624260 + (TTA)n Simple_repeat Simple_repeat 2 33 0 449 0 0 0 chr13 86248911 86248961 -15624208 - LTR17 LTR ERV1 -456 324 275 412 304 119 31 chr13 86249072 86249087 -15624082 - MIR SINE MIR -32 230 218 2391 66 13 35 chr13 86249087 86249405 -15623764 - AluSx SINE Alu -1 311 1 412 304 119 31 chr13 86249405 86249583 -15623586 - MIR SINE MIR -44 218 20 5078 146 50 84 chr13 86250109 86250608 -15622561 + L1MA4A LINE L1 4402 4916 -1387 1898 147 25 0 chr13 86250608 86250893 -15622276 + AluJo SINE Alu 1 292 -20 5078 146 50 84 chr13 86250893 86251486 -15621683 + L1MA4A LINE L1 4916 5527 -776 2182 95 11 0 chr13 86251486 86251770 -15621399 + AluSq SINE Alu 2 288 -25 5078 146 50 84 chr13 86251770 86252187 -15620982 + L1MA4A LINE L1 5527 5956 -347 243 0 0 0 chr13 86252187 86252214 -15620955 + (CA)n Simple_repeat Simple_repeat 2 28 0 5078 146 50 84 chr13 86252214 86252588 -15620581 + L1MA4A LINE L1 5956 6221 -82 2110 117 0 0 chr13 86252588 86252869 -15620300 + AluSx SINE Alu 1 281 -31 5078 146 50 84 chr13 86252869 86252946 -15620223 + L1MA4A LINE L1 6221 6299 -4 21 0 0 0 chr13 86253581 86253602 -15619567 + AT_rich Low_complexity Low_complexity 1 21 0 224 268 0 0 chr13 86254252 86254308 -15618861 + MER5B DNA MER1_type 1 56 -122 311 268 9 45 chr13 86254371 86254483 -15618686 + MER5A DNA MER1_type 81 188 -1 1925 158 0 16 chr13 86255893 86256204 -15616965 + AluJb SINE Alu 1 306 -6 2157 174 70 2 chr13 86256215 86256646 -15616523 + L1MB4 LINE L1 5691 6150 -30 5616 55 22 39 chr13 86256648 86257428 -15615741 - SVA Other Other 0 1386 620 1652 90 67 41 chr13 86257773 86258116 -15615053 - SVA Other Other -555 831 480 198 0 0 0 chr13 86258311 86258333 -15614836 + (T)n Simple_repeat Simple_repeat 1 22 0 180 111 0 0 chr13 86259212 86259239 -15613930 + (TAA)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr13 86259284 86259308 -15613861 + AT_rich Low_complexity Low_complexity 1 24 0 260 295 0 0 chr13 86259446 86259507 -15613662 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 2331 86 3 3 chr13 86259905 86260208 -15612961 - AluSx SINE Alu -7 305 3 2031 90 61 0 chr13 86260649 86260927 -15612242 + AluSg SINE Alu 1 295 -15 859 165 0 0 chr13 86262086 86262213 -15610956 - FLAM_C SINE Alu -16 127 1 242 29 29 0 chr13 86262271 86262306 -15610863 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2619 7 0 0 chr13 86262308 86262591 -15610578 - AluY SINE Alu -28 283 1 1656 81 5 5 chr13 86262621 86262830 -15610339 + L1PA8 LINE L1 5950 6158 -14 291 308 109 51 chr13 86262896 86263289 -15609880 + L2 LINE L2 1785 2200 -1114 1632 174 9 40 chr13 86263289 86263466 -15609703 - AluJo SINE Alu -1 311 147 1935 126 37 7 chr13 86263466 86263760 -15609409 - AluSq SINE Alu -10 303 1 1632 174 9 40 chr13 86263760 86263903 -15609266 - AluJo SINE Alu -165 147 1 5887 145 28 39 chr13 86264092 86265818 -15607351 - L1PA16 LINE L1 0 6166 4473 2267 90 0 22 chr13 86265818 86266130 -15607039 - AluY SINE Alu -6 305 1 5887 145 28 39 chr13 86266130 86266482 -15606687 - L1PA16 LINE L1 -1693 4473 4119 284 341 84 35 chr13 86266517 86266743 -15606426 + L2 LINE L2 2549 2785 -529 396 231 83 25 chr13 86266760 86266881 -15606288 + MIR SINE MIR 2 129 -133 787 198 0 16 chr13 86267013 86267139 -15606030 - FLAM_A SINE Alu -9 124 1 26 0 0 0 chr13 86267859 86267885 -15605284 + AT_rich Low_complexity Low_complexity 1 26 0 256 179 53 11 chr13 86268136 86268231 -15604938 + (TA)n Simple_repeat Simple_repeat 2 100 0 302 249 12 71 chr13 86268394 86268529 -15604640 + MIR3 SINE MIR 74 199 -9 2430 84 0 0 chr13 86268595 86268891 -15604278 - AluSx SINE Alu -16 296 1 217 188 104 0 chr13 86269352 86269400 -15603769 + L2 LINE L2 3214 3266 -6 269 237 134 52 chr13 86271153 86271250 -15601919 + L2 LINE L2 3209 3313 0 269 51 26 0 chr13 86272156 86272195 -15600974 + (TTCCC)n Simple_repeat Simple_repeat 3 42 0 657 142 150 18 chr13 86273028 86273141 -15600028 - FLAM_C SINE Alu -14 129 2 382 274 49 64 chr13 86273699 86273903 -15599266 + MIR SINE MIR 50 250 -12 1834 181 11 34 chr13 86276952 86277305 -15595864 + Tigger7 DNA MER2_type 1 345 -388 1064 108 7 0 chr13 86277299 86277447 -15595722 + Tigger7 DNA MER2_type 2339 2487 0 * 2406 88 0 25 chr13 86277498 86277818 -15595351 + AluSx SINE Alu 1 312 0 1694 259 65 26 chr13 86278414 86279017 -15594152 + L1ME3A LINE L1 5322 5947 -223 182 357 83 6 chr13 86279617 86279774 -15593395 + MIR3 SINE MIR 31 199 -9 21 0 0 0 chr13 86280045 86280066 -15593103 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 86280092 86280113 -15593056 + AT_rich Low_complexity Low_complexity 1 21 0 224 174 29 29 chr13 86281238 86281307 -15591862 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 1509 109 66 0 chr13 86281349 86281560 -15591609 + MER30 DNA MER1_type 5 229 -1 728 209 19 25 chr13 86281785 86281943 -15591226 - L1MB2 LINE L1 -34 6137 5981 677 225 36 7 chr13 86281910 86282081 -15591088 - L1MB2 LINE L1 -496 5687 5497 * 453 189 123 16 chr13 86282291 86282413 -15590756 - L1MB2 LINE L1 -841 5305 5171 266 270 50 30 chr13 86282781 86282881 -15590288 + L3 LINE CR1 617 718 -859 603 242 67 73 chr13 86282977 86283307 -15589862 - MLT1J1 LTR MaLR -110 336 9 1876 159 19 16 chr13 86283395 86283703 -15589466 + AluJb SINE Alu 1 309 -3 587 329 77 12 chr13 86283906 86284310 -15588859 + L3 LINE CR1 1143 1572 -5 27 62 0 0 chr13 86284718 86284766 -15588403 + AT_rich Low_complexity Low_complexity 1 48 0 1212 289 53 24 chr13 86286075 86286652 -15586517 - L2 LINE L2 -15 3298 2702 420 207 17 43 chr13 86287336 86287452 -15585717 - L1MC5 LINE L1 -44 7917 7805 1750 160 71 54 chr13 86287545 86287913 -15585256 - MLT1A2 LTR MaLR 0 374 1 332 299 103 61 chr13 86287942 86288156 -15585013 - L1MB2 LINE L1 -1308 4838 4616 661 239 47 33 chr13 86288752 86289028 -15584141 - HAL1 LINE L1 -1135 1372 1093 1618 222 81 74 chr13 86289030 86289401 -15583768 - L1ME3A LINE L1 -4 6166 5799 1862 146 28 3 chr13 86289401 86289689 -15583480 - AluJo SINE Alu -17 295 1 1618 222 81 74 chr13 86289689 86289770 -15583399 - L1ME3A LINE L1 -371 5799 5720 1958 148 7 7 chr13 86289770 86290074 -15583095 - AluJb SINE Alu 0 312 9 1618 222 81 74 chr13 86290074 86290200 -15582969 - L1ME3A LINE L1 -450 5720 5583 801 154 191 22 chr13 86290205 86290425 -15582744 - MLT1F1 LTR MaLR -80 487 195 507 224 42 0 chr13 86290426 86290573 -15582596 - L1ME3A LINE L1 -673 5491 5339 770 250 66 91 chr13 86290577 86291049 -15582120 - HAL1 LINE L1 -1427 1080 621 1789 225 59 25 chr13 86291221 86291806 -15581363 - MER21B LTR ERV1 -81 782 127 750 287 60 30 chr13 86292030 86292295 -15580874 - HAL1 LINE L1 -2225 282 10 2436 90 3 0 chr13 86292308 86292619 -15580550 + AluSp SINE Alu 1 312 -1 237 304 17 17 chr13 86294151 86294266 -15578903 + CT-rich Low_complexity Low_complexity 1 115 0 207 304 36 0 chr13 86294386 86294442 -15578727 - L2 LINE L2 -2873 441 384 * 366 343 45 38 chr13 86294440 86294669 -15578500 + L2 LINE L2 3019 3252 -61 1995 166 86 3 chr13 86294669 86295006 -15578163 - MLT1A1 LTR MaLR 0 365 1 366 343 45 38 chr13 86295006 86295041 -15578128 + L2 LINE L2 3252 3285 -28 236 259 0 0 chr13 86295105 86295163 -15578006 + L2 LINE L2 2594 2651 -663 248 130 22 0 chr13 86295852 86295898 -15577271 + CT-rich Low_complexity Low_complexity 2 48 0 * 264 100 0 0 chr13 86295888 86295928 -15577241 + (TC)n Simple_repeat Simple_repeat 1 40 0 2119 106 0 23 chr13 86295968 86296305 -15576864 + AluSx SINE Alu 1 312 0 965 193 9 66 chr13 86297093 86297321 -15575848 - MER20 DNA MER1_type -1 218 4 375 169 135 0 chr13 86298068 86298157 -15575012 - LTR67 LTR ERVL -11 546 446 263 356 42 0 chr13 86298256 86298374 -15574795 + L2 LINE L2 3150 3272 0 217 275 99 30 chr13 86298607 86298738 -15574431 - MIR SINE MIR -83 179 40 2408 97 0 0 chr13 86298787 86299097 -15574072 - AluSg SINE Alu 0 310 1 941 186 37 16 chr13 86299452 86299671 -15573498 - L1MC3 LINE L1 -5 8037 7670 645 229 58 43 chr13 86299671 86299859 -15573310 - L1MC4 LINE L1 -308 7734 7544 345 222 205 21 chr13 86299986 86300220 -15572949 - L1MC5 LINE L1 -48 7913 7637 237 108 0 0 chr13 86300334 86300371 -15572798 + (TCC)n Simple_repeat Simple_repeat 1 37 0 2078 134 3 10 chr13 86300451 86300756 -15572413 - AluJo SINE Alu -9 303 1 251 346 99 6 chr13 86301117 86301279 -15571890 + LTR67 LTR ERVL 379 555 -2 1593 159 20 36 chr13 86301552 86301854 -15571315 - L1PA16 LINE L1 0 6166 5870 333 116 14 43 chr13 86302081 86302150 -15571019 - L1MC5 LINE L1 -44 7917 7851 750 163 16 24 chr13 86302489 86302612 -15570557 - AluJb SINE Alu -13 299 178 957 126 0 15 chr13 86302680 86302849 -15570320 - FLAM_C SINE Alu 0 167 1 250 135 0 0 chr13 86303811 86303848 -15569321 - MLT1E LTR MaLR -1 592 556 197 341 31 39 chr13 86303927 86304056 -15569113 - L2 LINE L2 -10 3303 3176 209 320 118 39 chr13 86304068 86304246 -15568923 - MIR3 SINE MIR -1 207 16 768 255 90 28 chr13 86304712 86305002 -15568167 - MLT1I LTR MaLR 0 409 102 828 264 41 16 chr13 86305119 86305361 -15567808 + MIR SINE MIR 15 262 0 2219 112 10 16 chr13 86305508 86305821 -15567348 + AluSx SINE Alu 1 311 -1 488 265 205 0 chr13 86306124 86306309 -15566860 + MIR SINE MIR 25 247 -15 190 327 164 0 chr13 86306924 86307028 -15566141 - L2 LINE L2 -2 3270 3150 2371 83 0 22 chr13 86307192 86307506 -15565663 - AluY SINE Alu -4 307 1 27 0 0 0 chr13 86309818 86309845 -15563324 + AT_rich Low_complexity Low_complexity 1 27 0 274 241 111 70 chr13 86312012 86312211 -15560958 - L1ME4a LINE L1 -206 5915 5709 1035 277 106 14 chr13 86312811 86313726 -15559443 + L1M4 LINE L1 2141 3176 -2970 276 243 64 110 chr13 86314309 86314482 -15558687 + L1ME4a LINE L1 5734 5898 -223 222 37 0 0 chr13 86314514 86314541 -15558628 + (CA)n Simple_repeat Simple_repeat 2 28 0 210 217 43 87 chr13 86314810 86314902 -15558267 - MIR SINE MIR -55 207 120 191 162 206 59 chr13 86315680 86315748 -15557421 - L2 LINE L2 0 3272 3195 23 0 0 0 chr13 86316969 86316992 -15556177 + AT_rich Low_complexity Low_complexity 1 23 0 188 302 115 29 chr13 86319271 86319410 -15553759 + L2 LINE L2 2899 3049 -223 544 251 159 29 chr13 86319676 86319883 -15553286 - MIR SINE MIR 0 262 29 191 363 80 26 chr13 86320545 86320658 -15552511 + L2 LINE L2 3195 3313 0 2221 96 0 0 chr13 86320953 86321262 -15551907 - AluSx SINE Alu 0 309 1 357 250 131 56 chr13 86321387 86321547 -15551622 - MIR SINE MIR -88 174 3 442 237 79 22 chr13 86321860 86321999 -15551170 + L1ME LINE L1 5518 5664 -457 552 342 182 30 chr13 86323143 86323719 -15549450 + L3 LINE CR1 907 1570 -7 348 333 0 0 chr13 86323825 86323927 -15549242 + MIR3 SINE MIR 96 197 -11 2287 96 7 0 chr13 86324183 86324475 -15548694 - AluSc SINE Alu -15 294 1 1965 142 0 35 chr13 86324665 86324976 -15548193 - AluJo SINE Alu -10 302 3 1548 194 0 20 chr13 86325119 86325413 -15547756 + AluJo SINE Alu 9 296 -16 591 246 127 63 chr13 86326145 86326413 -15546756 - L2 LINE L2 0 3313 3029 213 255 0 0 chr13 86326823 86326870 -15546299 - L2 LINE L2 -19 3294 3248 185 171 49 0 chr13 86327047 86327088 -15546081 + L2 LINE L2 3195 3237 -35 284 270 0 14 chr13 86327477 86327551 -15545618 + Charlie8 DNA MER1_type 2345 2417 0 2540 57 0 10 chr13 86328036 86328350 -15544819 - AluY SINE Alu 0 311 1 283 336 0 18 chr13 86328355 86328468 -15544701 - L2 LINE L2 -569 2745 2635 257 313 24 12 chr13 86330416 86330499 -15542670 + MIR SINE MIR 40 123 -85 456 277 188 22 chr13 86330586 86330810 -15542359 + MIR SINE MIR 2 262 0 375 23 0 0 chr13 86331517 86331561 -15541608 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 323 209 82 21 chr13 86331890 86332029 -15541140 + MIR SINE MIR 13 241 -21 26 0 0 0 chr13 86332944 86332970 -15540199 + AT_rich Low_complexity Low_complexity 1 26 0 1730 112 4 0 chr13 86333290 86333522 -15539647 - AluSp SINE Alu -18 295 63 2275 72 0 66 chr13 86334037 86334356 -15538813 + AluY SINE Alu 4 301 -10 21 0 0 0 chr13 86334790 86334811 -15538358 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 86336103 86336125 -15537044 + AT_rich Low_complexity Low_complexity 1 22 0 1981 108 35 7 chr13 86336831 86337117 -15536052 - AluSx SINE Alu -18 294 1 786 174 0 0 chr13 86338835 86338978 -15534191 + FLAM_C SINE Alu 3 145 0 25 51 0 0 chr13 86339444 86339483 -15533686 + AT_rich Low_complexity Low_complexity 1 39 0 895 271 88 13 chr13 86339788 86340094 -15533075 + MLT1I LTR MaLR 79 407 -2 431 219 53 9 chr13 86340099 86340213 -15532956 - MIR SINE MIR -43 219 101 385 253 13 0 chr13 86340213 86340292 -15532877 + Tigger3(Golem) DNA MER2_type 1 80 -2949 654 178 28 0 chr13 86340423 86340530 -15532639 + Tigger3(Golem) DNA MER2_type 2920 3029 0 259 325 12 36 chr13 86340530 86340613 -15532556 - MIR SINE MIR -160 102 22 2368 82 0 3 chr13 86340613 86340917 -15532252 - AluY SINE Alu -8 303 1 4965 147 16 14 chr13 86341070 86341942 -15531227 - L1MB1 LINE L1 -26 6142 5269 28 61 0 0 chr13 86342012 86342061 -15531108 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 86343125 86343146 -15530023 + AT_rich Low_complexity Low_complexity 1 21 0 4697 212 59 35 chr13 86343357 86344913 -15528256 - L1ME1 LINE L1 0 6166 4648 2461 211 59 20 chr13 86344913 86345458 -15527711 + MLT1F1 LTR MaLR 2 567 0 4697 212 59 35 chr13 86345458 86345693 -15527476 - L1ME1 LINE L1 -1518 4648 4420 2354 103 0 0 chr13 86345693 86345995 -15527174 + AluSg SINE Alu 1 302 -8 4697 212 59 35 chr13 86345995 86346284 -15526885 - L1ME1 LINE L1 -1746 4420 4036 287 289 117 77 chr13 86346522 86346795 -15526374 + MLT1J LTR MaLR 1 284 -227 * 348 163 51 61 chr13 86346793 86346891 -15526278 + MLT1J LTR MaLR 415 511 0 490 237 25 0 chr13 86347333 86347451 -15525718 + L2 LINE L2 3193 3313 0 862 128 0 0 chr13 86348494 86348611 -15524558 + AluJb SINE Alu 1 117 -195 21 0 0 0 chr13 86348638 86348659 -15524510 + AT_rich Low_complexity Low_complexity 1 21 0 374 264 69 56 chr13 86349004 86349148 -15524021 - L2 LINE L2 -3 3310 3165 1040 267 90 45 chr13 86349442 86349484 -15523685 + L1MEc LINE L1 1826 1865 -4350 1563 144 7 50 chr13 86349484 86349761 -15523408 - AluJo SINE Alu -33 279 15 1040 267 90 45 chr13 86349761 86349860 -15523309 + L1MEc LINE L1 1865 1958 -4257 899 181 148 0 chr13 86349860 86350042 -15523127 + MER6B DNA MER2_type 2 210 0 1040 267 90 45 chr13 86350042 86350692 -15522477 + L1MEc LINE L1 1958 2622 -3593 839 134 22 0 chr13 86351402 86351536 -15521633 + BC200 scRNA scRNA 16 152 -48 473 321 119 14 chr13 86351592 86352277 -15520892 - L1P LINE L1 -726 5425 4661 282 260 13 13 chr13 86352418 86352495 -15520674 + CT-rich Low_complexity Low_complexity 2 78 0 245 243 54 0 chr13 86352580 86352654 -15520515 - L1ME2 LINE L1 -235 5929 5852 285 319 26 29 chr13 86352665 86352938 -15520231 - L1M4 LINE L1 -1488 4658 4387 342 231 61 78 chr13 86352956 86353193 -15519976 - L1MEd LINE L1 -1027 1463 1126 1361 114 41 102 chr13 86353416 86353562 -15519607 + MER30 DNA MER1_type 1 128 -102 2359 107 0 0 chr13 86353562 86353872 -15519297 - AluSx SINE Alu -2 310 1 1361 114 41 102 chr13 86353872 86353970 -15519199 + MER30 DNA MER1_type 128 230 0 994 291 116 38 chr13 86354208 86355035 -15518134 + L2 LINE L2 1823 3299 -14 21 0 0 0 chr13 86355045 86355066 -15518103 + AT_rich Low_complexity Low_complexity 1 21 0 197 291 120 68 chr13 86357361 86357478 -15515691 - L2 LINE L2 -828 2486 2364 478 274 152 25 chr13 86357572 86357769 -15515400 - LTR16A LTR ERVL -5 445 224 506 185 85 23 chr13 86357769 86357899 -15515270 - MLT1B LTR MaLR -235 155 18 258 277 156 14 chr13 86357994 86358135 -15515034 - ERVL LTR ERVL -1467 4297 4137 391 309 8 32 chr13 86359424 86359550 -15513619 - L2 LINE L2 -1 3271 3149 193 291 68 19 chr13 86359701 86359804 -15513365 - MIR3 SINE MIR -86 122 15 2508 87 0 0 chr13 86361245 86361555 -15511614 - AluSg SINE Alu 0 310 1 208 100 0 0 chr13 86362193 86362223 -15510946 + L2 LINE L2 3022 3051 -262 218 204 184 41 chr13 86362312 86362410 -15510759 + L2 LINE L2 3175 3286 -27 903 133 0 30 chr13 86362510 86362645 -15510524 + FLAM_C SINE Alu 1 131 -2 24 0 0 0 chr13 86362825 86362849 -15510320 + GC_rich Low_complexity Low_complexity 1 24 0 226 186 93 76 chr13 86362858 86362976 -15510193 - L2 LINE L2 -1357 1957 1838 206 276 11 35 chr13 86363624 86363711 -15509458 + L2 LINE L2 3150 3234 -79 1378 159 4 9 chr13 86364243 86364470 -15508699 + AluJo SINE Alu 1 226 -86 3500 191 79 28 chr13 86364772 86364855 -15508314 + MER21B LTR ERV1 1 78 -785 4096 166 67 59 chr13 86364855 86365800 -15507369 - LTR13 LTR ERVK -2 952 1 3500 191 79 28 chr13 86365800 86366527 -15506642 + MER21B LTR ERV1 78 852 -11 538 216 72 32 chr13 86366833 86367019 -15506150 + MER58 DNA MER1_type 6 2420 0 1415 177 92 6 chr13 86367698 86368014 -15505155 - L1MB8 LINE L1 0 6178 5836 198 257 40 14 chr13 86368200 86368274 -15504895 - L2 LINE L2 -43 3229 3154 210 317 0 49 chr13 86368928 86369010 -15504159 + MIR SINE MIR 73 150 -58 250 246 35 0 chr13 86369914 86369971 -15503198 - MIR3 SINE MIR -38 170 112 192 315 11 33 chr13 86372104 86372196 -15500973 + L2 LINE L2 1589 1678 -1636 1805 173 94 6 chr13 86372538 86372856 -15500313 + MER7A DNA MER2_type 2 345 -1 248 333 78 31 chr13 86373408 86373537 -15499632 - L2 LINE L2 -2 3270 3136 1529 180 39 27 chr13 86373764 86374098 -15499071 + Charlie1 DNA MER1_type 2292 2629 -132 189 260 41 41 chr13 86374112 86374185 -15498984 - L2 LINE L2 -556 2758 2686 463 361 123 12 chr13 86374279 86374783 -15498386 - L2 LINE L2 -867 2447 1888 748 282 34 13 chr13 86375850 86376064 -15497105 - MIR SINE MIR -43 219 3 217 264 0 0 chr13 86376628 86376681 -15496488 + (TA)n Simple_repeat Simple_repeat 1 53 0 965 164 5 75 chr13 86377103 86377304 -15495865 - MER20 DNA MER1_type 0 219 33 949 219 6 6 chr13 86377365 86377529 -15495640 + FAM SINE Alu 2 165 -10 27 62 0 0 chr13 86377560 86377608 -15495561 + AT_rich Low_complexity Low_complexity 1 48 0 799 291 88 49 chr13 86377624 86378835 -15494334 - L1ME3A LINE L1 -241 5929 4664 537 277 126 19 chr13 86378933 86379310 -15493859 - MLT1J LTR MaLR -22 489 9 810 276 57 36 chr13 86379730 86380176 -15492993 - L1ME3A LINE L1 -2197 3949 3474 1200 235 93 6 chr13 86380207 86380552 -15492617 - L1ME3A LINE L1 -243 5910 5536 272 291 152 31 chr13 86380790 86381626 -15491543 - L1ME3A LINE L1 -2984 3145 2209 625 322 131 36 chr13 86381672 86382497 -15490672 - L1ME3A LINE L1 -5212 907 5 1658 236 106 15 chr13 86383685 86384202 -15488967 + L1MC4 LINE L1 6000 6468 -1574 342 0 0 0 chr13 86384202 86384240 -15488929 + (TG)n Simple_repeat Simple_repeat 2 39 0 1658 236 106 15 chr13 86384240 86384743 -15488426 + L1MC4 LINE L1 6468 7233 -809 924 222 0 11 chr13 86384756 86384932 -15488237 + Tigger5 DNA MER2_type 2 175 -2148 830 166 98 12 chr13 86385161 86385324 -15487845 - MER39 LTR ERV1 -527 180 4 5606 176 79 44 chr13 86385503 86386719 -15486450 - MER39-int LTR ERV1 -171 4765 3494 2338 98 7 3 chr13 86386719 86387024 -15486145 + AluSx SINE Alu 1 306 -6 5606 176 79 44 chr13 86387024 86387176 -15485993 - MER39-int LTR ERV1 -1442 3494 3349 527 174 40 154 chr13 86387331 86387578 -15485591 + L1MC4 LINE L1 7823 8041 -1 2242 89 0 23 chr13 86389993 86390297 -15482872 + AluY SINE Alu 1 297 -14 201 171 0 0 chr13 86390314 86390349 -15482820 + T-rich Low_complexity Low_complexity 1 35 0 261 343 29 51 chr13 86390604 86390741 -15482428 - L2 LINE L2 -1 3271 3138 1122 159 209 39 chr13 86391181 86391597 -15481572 - LTR54B LTR ERV1 -2 496 10 239 246 29 14 chr13 86391942 86392011 -15481158 + L2 LINE L2 3136 3205 -67 1332 138 40 31 chr13 86392954 86393178 -15479991 - AluJb SINE Alu -2 310 85 188 65 0 32 chr13 86394140 86394171 -15478998 + (CCTCG)n Simple_repeat Simple_repeat 5 34 0 216 219 171 38 chr13 86394304 86394409 -15478760 - L2 LINE L2 -22 3250 3132 242 268 0 0 chr13 86394936 86394992 -15478177 - MIR SINE MIR -11 251 196 10548 123 27 7 chr13 86395201 86395405 -15477764 - Tigger4(Zombi) DNA MER2_type -761 1970 1771 2354 112 0 0 chr13 86395405 86395710 -15477459 + AluSx SINE Alu 1 305 -7 10548 123 27 7 chr13 86395710 86397398 -15475771 - Tigger4(Zombi) DNA MER2_type -960 1771 1 208 295 36 62 chr13 86398968 86399080 -15474089 + L3 LINE CR1 192 300 -1277 942 275 155 78 chr13 86399124 86399761 -15473408 + L3 LINE CR1 439 1124 -453 227 282 14 14 chr13 86400119 86400190 -15472979 + L3 LINE CR1 1263 1333 -244 329 277 168 41 chr13 86400336 86400556 -15472613 - L3 LINE CR1 -604 973 726 208 274 20 0 chr13 86402117 86402168 -15471001 + MIR SINE MIR 96 147 -61 279 0 0 0 chr13 86404726 86404757 -15468412 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 35 0 0 chr13 86406355 86406384 -15466785 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2188 99 18 0 chr13 86406386 86406668 -15466501 - AluSq SINE Alu -26 287 1 193 269 139 46 chr13 86407249 86407357 -15465812 - MIR3 SINE MIR -3 205 88 27 0 0 0 chr13 86408838 86408865 -15464304 + AT_rich Low_complexity Low_complexity 1 27 0 2153 108 35 0 chr13 86408874 86409161 -15464008 + AluSx SINE Alu 1 297 -15 1958 111 25 56 chr13 86410511 86410566 -15462603 + THE1C LTR MaLR 1 56 -319 2393 87 7 7 chr13 86410566 86410875 -15462294 + AluSp SINE Alu 1 309 -4 1958 111 25 56 chr13 86410875 86411178 -15461991 + THE1C LTR MaLR 56 348 -27 570 170 41 54 chr13 86411444 86411591 -15461578 + MER74B LTR ERVL 58 202 -420 1103 191 120 19 chr13 86411748 86412072 -15461097 + MER74A LTR ERVL 199 555 -3 220 321 134 19 chr13 86412114 86412323 -15460846 + L2 LINE L2 2231 2463 -851 217 308 154 39 chr13 86412390 86412494 -15460675 + L2 LINE L2 3115 3230 -42 279 0 0 0 chr13 86412748 86412779 -15460390 + (CA)n Simple_repeat Simple_repeat 1 31 0 1668 219 65 20 chr13 86413760 86414207 -15458962 + MLT1C LTR MaLR 1 467 0 1608 173 6 20 chr13 86414358 86414674 -15458495 + MLT2C2 LTR ERVL 1 378 -86 245 109 22 0 chr13 86414702 86414748 -15458421 + (TG)n Simple_repeat Simple_repeat 2 48 0 781 175 35 29 chr13 86414887 86415058 -15458111 + MER5B DNA MER1_type 4 175 -3 461 233 187 13 chr13 86415137 86415287 -15457882 + MER5A DNA MER1_type 9 184 -5 340 350 145 15 chr13 86415461 86415661 -15457508 + MIR SINE MIR 25 250 -12 1316 187 68 153 chr13 86415779 86416336 -15456833 + MER67D LTR ERV1 1 510 -4 21096 47 8 1 chr13 86417384 86420782 -15452387 + L1PA6 LINE L1 2744 6149 -5 315 207 124 78 chr13 86420802 86421022 -15452147 - MER5A DNA MER1_type 0 189 1 196 232 89 0 chr13 86421234 86421290 -15451879 - MIR SINE MIR -84 178 118 1817 157 165 0 chr13 86421342 86421706 -15451463 - MSTB LTR MaLR 0 426 3 2102 214 66 100 chr13 86422649 86423422 -15449747 - MER21B LTR ERV1 -105 758 12 2275 100 7 3 chr13 86423819 86424128 -15449041 + AluSg SINE Alu 1 310 0 404 161 46 89 chr13 86424745 86424814 -15448355 + MER69A DNA AcHobo 24 94 -2432 2310 80 3 0 chr13 86424814 86425121 -15448048 - AluSq SINE Alu 0 308 1 404 161 46 89 chr13 86425121 86425214 -15447955 + MER69A DNA AcHobo 94 176 -1 249 33 0 0 chr13 86425322 86425352 -15447817 + (GGA)n Simple_repeat Simple_repeat 1 30 0 1190 274 89 10 chr13 86426669 86427059 -15446110 - MLT1G LTR MaLR 0 590 170 2298 164 82 20 chr13 86427059 86427548 -15445621 + MER74A LTR ERVL 1 519 -39 972 145 0 0 chr13 86427561 86427699 -15445470 - AluSx SINE Alu -12 300 163 565 92 218 0 chr13 86427699 86427786 -15445383 - AluSx SINE Alu -202 111 6 451 210 5 124 chr13 86427826 86427994 -15445175 - MLT1G LTR MaLR -416 174 28 2270 121 0 10 chr13 86427994 86428308 -15444861 - AluSx SINE Alu -1 311 1 451 210 5 124 chr13 86428308 86428325 -15444844 - MLT1G LTR MaLR -562 28 11 1346 249 25 6 chr13 86428327 86428681 -15444488 - L1ME3A LINE L1 -21 6149 5789 838 151 7 7 chr13 86428696 86428835 -15444334 - MER74A LTR ERVL -419 139 1 * 1164 281 89 10 chr13 86428835 86429225 -15443944 + MLT1G LTR MaLR 170 590 0 26 30 0 0 chr13 86429796 86429829 -15443340 + AT_rich Low_complexity Low_complexity 1 33 0 2458 67 0 7 chr13 86429831 86430128 -15443041 + AluY SINE Alu 1 295 -16 639 200 30 15 chr13 86430513 86430648 -15442521 - MER5B DNA MER1_type -15 163 27 225 289 109 47 chr13 86430696 86430824 -15442345 - L3 LINE CR1 -716 861 726 1168 198 59 26 chr13 86431017 86431356 -15441813 + L1MB8 LINE L1 5796 6145 -33 262 172 22 72 chr13 86431701 86431881 -15441288 + C-rich Low_complexity Low_complexity 2 172 0 462 340 7 0 chr13 86431882 86432032 -15441137 + CT-rich Low_complexity Low_complexity 4 154 0 352 186 16 55 chr13 86432168 86432351 -15440818 + C-rich Low_complexity Low_complexity 2 177 0 253 250 208 58 chr13 86433694 86433814 -15439355 + MIR3 SINE MIR 22 159 -49 434 243 53 53 chr13 86433837 86433989 -15439180 + MER112 DNA MER1_type 69 220 -40 2049 135 7 14 chr13 86434042 86434338 -15438831 - AluJb SINE Alu -18 294 1 22 94 0 0 chr13 86434494 86434558 -15438611 + AT_rich Low_complexity Low_complexity 1 64 0 678 229 33 103 chr13 86434566 86434746 -15438423 + L1ME3A LINE L1 5582 5734 -436 1693 184 10 3 chr13 86434746 86435034 -15438135 + AluJb SINE Alu 23 312 0 678 229 33 103 chr13 86435034 86435154 -15438015 + L1ME3A LINE L1 5734 5861 -309 449 222 0 0 chr13 86435234 86435324 -15437845 + MER39 LTR ERV1 266 355 -352 2184 124 10 10 chr13 86435324 86435630 -15437539 + AluSx SINE Alu 1 306 -6 433 273 27 71 chr13 86435631 86435988 -15437181 - MER39 LTR ERV1 -144 563 1 295 376 29 6 chr13 86436662 86436835 -15436334 + MIR3 SINE MIR 21 197 -11 378 297 128 62 chr13 86437108 86437414 -15435755 - L2 LINE L2 -7 3265 2940 416 283 30 60 chr13 86437824 86437849 -15435320 + MLT1I LTR MaLR 49 73 -336 2537 76 0 0 chr13 86437849 86438151 -15435018 - AluSx SINE Alu -6 306 5 416 283 30 60 chr13 86438151 86438291 -15434878 + MLT1I LTR MaLR 73 209 -200 482 223 158 7 chr13 86439063 86439202 -15433967 + MIR SINE MIR 86 245 -17 190 376 128 0 chr13 86439436 86439553 -15433616 + MIR3 SINE MIR 29 160 -48 1215 261 73 45 chr13 86439556 86439709 -15433460 - Charlie4a DNA MER1_type -1456 505 358 1921 155 10 7 chr13 86439709 86440000 -15433169 - AluJo SINE Alu -20 292 1 1215 261 73 45 chr13 86440000 86440309 -15432860 - Charlie4a DNA MER1_type -1603 358 30 379 233 7 23 chr13 86443783 86444085 -15429084 + (TG)n Simple_repeat Simple_repeat 1 297 0 239 210 0 12 chr13 86444121 86444202 -15428967 + (TG)n Simple_repeat Simple_repeat 2 81 0 243 346 15 7 chr13 86444218 86444354 -15428815 + (TG)n Simple_repeat Simple_repeat 2 138 0 427 310 49 11 chr13 86444559 86444806 -15428363 - L1MC/D LINE L1 -334 5787 5619 981 147 0 37 chr13 86444965 86445128 -15428041 + FRAM SINE Alu 1 156 -20 4087 156 39 0 chr13 86445156 86445856 -15427313 - L1MB3 LINE L1 -8 6175 5449 272 375 78 4 chr13 86445860 86446092 -15427077 - L1MC/D LINE L1 -1821 4325 4077 2788 35 0 0 chr13 86446826 86447136 -15426033 + AluY SINE Alu 1 310 -1 346 266 0 11 chr13 86447625 86447719 -15425450 + Charlie4 DNA MER1_type 170 262 -1699 325 301 194 14 chr13 86447830 86448046 -15425123 - L2 LINE L2 -2 3270 3016 401 250 58 17 chr13 86448301 86448421 -15424748 + L2 LINE L2 3188 3312 -1 1684 169 18 28 chr13 86448454 86448738 -15424431 + AluJo SINE Alu 1 281 -31 1238 164 116 36 chr13 86449248 86449577 -15423592 + MLT1B LTR MaLR 22 376 -14 926 130 104 0 chr13 86450231 86450385 -15422784 - AluJb SINE Alu 0 312 143 410 269 90 7 chr13 86450618 86450763 -15422406 + MIR SINE MIR 88 244 -18 1858 161 17 0 chr13 86451381 86451680 -15421489 + AluJo SINE Alu 1 304 -8 191 146 24 0 chr13 86451791 86451832 -15421337 + (TATG)n Simple_repeat Simple_repeat 3 44 0 840 146 0 0 chr13 86451862 86452040 -15421129 + (CA)n Simple_repeat Simple_repeat 1 178 0 385 344 72 36 chr13 86452399 86452620 -15420549 - MIR SINE MIR -21 241 13 31 0 0 0 chr13 86452715 86452746 -15420423 + AT_rich Low_complexity Low_complexity 1 31 0 2585 151 18 5 chr13 86453149 86453915 -15419254 + L1M2 LINE L1 4930 5707 -584 789 231 144 31 chr13 86453929 86454249 -15418920 - MLT1D LTR MaLR -148 357 2 922 232 137 32 chr13 86455335 86455777 -15417392 + MER39 LTR ERV1 9 707 0 1053 267 146 16 chr13 86455802 86456308 -15416861 - L1MC4a LINE L1 -1982 5826 5255 21 71 0 0 chr13 86456985 86457027 -15416142 + AT_rich Low_complexity Low_complexity 1 42 0 832 226 120 18 chr13 86457037 86457312 -15415857 + MLT1C LTR MaLR 158 460 -7 1055 220 56 3 chr13 86457328 86457633 -15415536 + Charlie4a DNA MER1_type 162 482 -26 432 171 29 9 chr13 86457878 86457983 -15415186 - L1MB4 LINE L1 0 6180 6074 2404 106 0 0 chr13 86458115 86458427 -15414742 + AluSq SINE Alu 1 312 -1 192 40 0 0 chr13 86458620 86458645 -15414524 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2395 144 152 20 chr13 86459155 86459695 -15413474 + MER39 LTR ERV1 1 611 -96 910 92 0 8 chr13 86459695 86459815 -15413354 + FLAM_C SINE Alu 1 119 -24 2487 40 0 17 chr13 86459835 86460164 -15413005 + AluY SINE Alu 1 311 0 499 184 29 0 chr13 86460173 86460276 -15412893 + MER39 LTR ERV1 601 706 -1 485 221 54 63 chr13 86460388 86460610 -15412559 + MER39-int LTR ERV1 92 311 -6020 507 150 189 24 chr13 86460714 86460841 -15412328 + MER39-int LTR ERV1 1378 1525 -4806 259 231 0 0 chr13 86460864 86460916 -15412253 + MER67B LTR ERV1 145 196 -465 2138 113 31 0 chr13 86460935 86461228 -15411941 - AluSq SINE Alu -11 302 1 1115 204 22 109 chr13 86461259 86461646 -15411523 + MER39-int LTR ERV1 276 606 -4330 253 127 0 143 chr13 86461650 86461713 -15411456 - MER31A LTR ERV1 -182 303 250 313 250 26 0 chr13 86461713 86461789 -15411380 + MER31A LTR ERV1 11 88 -397 377 74 56 0 chr13 86461798 86461852 -15411317 - MER54A LTR ERVL -842 59 3 424 260 0 10 chr13 86461865 86461969 -15411200 + MER39-int LTR ERV1 772 874 -4062 304 216 52 45 chr13 86462167 86462301 -15410868 + MER39-int LTR ERV1 1339 1473 -6647 2063 137 6 25 chr13 86462324 86462638 -15410531 - AluJo SINE Alu -4 308 1 2387 82 0 3 chr13 86462689 86462993 -15410176 + AluSg SINE Alu 1 303 -7 462 176 25 94 chr13 86463008 86463167 -15410002 + MER39-int LTR ERV1 2438 2585 -2351 1028 142 0 0 chr13 86463177 86463318 -15409851 + AluJb SINE Alu 1 141 -171 36 0 0 0 chr13 86463335 86463371 -15409798 + AT_rich Low_complexity Low_complexity 1 36 0 1450 182 114 90 chr13 86463371 86463861 -15409308 + MER39-int LTR ERV1 2582 4457 -1874 1114 226 139 10 chr13 86463962 86464364 -15408805 - L1MC4a LINE L1 -459 7349 6896 1845 105 91 108 chr13 86464366 86464783 -15408386 - LTR14B LTR ERVK 0 608 1 2108 201 52 86 chr13 86464786 86465287 -15407882 - L1MC4a LINE L1 -909 6899 6425 357 24 0 0 chr13 86465287 86465329 -15407840 + (TG)n Simple_repeat Simple_repeat 2 43 0 2108 201 52 86 chr13 86465329 86465504 -15407665 - L1MC4a LINE L1 -1383 6425 6246 301 212 17 128 chr13 86465524 86465654 -15407515 - L1MC4a LINE L1 -1791 6017 5911 183 80 0 0 chr13 86465654 86465679 -15407490 + (TA)n Simple_repeat Simple_repeat 1 25 0 301 212 17 128 chr13 86465679 86465727 -15407442 - L1MC4a LINE L1 -1897 5911 5859 1672 104 0 5 chr13 86465900 86466120 -15407049 - AluSg/x SINE Alu 0 310 92 33 0 0 42 chr13 86516302 86516320 -15356849 + AT_rich Low_complexity Low_complexity 1 18 -28 2214 99 0 14 chr13 86516320 86516614 -15356555 + AluSg SINE Alu 1 290 -20 33 0 0 42 chr13 86516614 86516643 -15356526 + AT_rich Low_complexity Low_complexity 18 46 0 24 32 0 0 chr13 86516683 86516714 -15356455 + AT_rich Low_complexity Low_complexity 1 31 0 651 187 18 24 chr13 86517029 86517356 -15355813 + GA-rich Low_complexity Low_complexity 1 325 0 1709 198 3 0 chr13 86517957 86518260 -15354909 + AluJo SINE Alu 1 304 -8 25 51 0 0 chr13 86518279 86518318 -15354851 + AT_rich Low_complexity Low_complexity 1 39 0 624 146 0 0 chr13 86518470 86518559 -15354610 + AluS SINE Alu 2 90 -222 2515 80 0 3 chr13 86520116 86520428 -15352741 + AluSx SINE Alu 1 311 -1 230 226 48 16 chr13 86521024 86521086 -15352083 + MIR SINE MIR 91 154 -108 21 36 0 0 chr13 86521901 86521929 -15351240 + AT_rich Low_complexity Low_complexity 1 28 0 2311 106 0 7 chr13 86521951 86522253 -15350916 - AluSq SINE Alu -13 300 1 387 296 15 37 chr13 86523920 86524055 -15349114 - MIR SINE MIR -128 134 3 534 178 22 0 chr13 86524159 86524249 -15348920 - AluJ/FRAM SINE Alu -7 305 214 404 641 0 0 chr13 86525203 86525359 -15347810 + (CA)n Simple_repeat Simple_repeat 2 157 0 2437 164 21 17 chr13 86525425 86525845 -15347324 - MSTA LTR MaLR 0 428 7 7130 179 40 11 chr13 86525845 86527294 -15345875 - MSTA-int LTR MaLR -25 1555 1 2589 138 32 2 chr13 86527296 86527703 -15345466 - MSTA LTR MaLR -2 426 8 337 295 16 8 chr13 86529277 86529399 -15343770 - MER51A-int LTR ERV1 -3884 996 874 1585 205 41 124 chr13 86529531 86529632 -15343537 - MER51A-int LTR ERV1 -7007 809 701 7525 111 11 23 chr13 86529632 86530716 -15342453 - MER11C LTR ERVK 0 1071 1 1585 205 41 124 chr13 86530716 86531228 -15341941 - MER51A-int LTR ERV1 -7115 701 247 1282 178 25 62 chr13 86531241 86531516 -15341653 - MER51A-int LTR ERV1 -7548 268 4 1580 120 148 77 chr13 86531533 86531858 -15341311 - MER51A LTR ERV1 -8 626 279 1358 289 42 7 chr13 86531857 86532328 -15340841 - MER51A LTR ERV1 -28 612 3 * 667 161 0 0 chr13 86532424 86532536 -15340633 - MER53 DNA DNA -76 113 2 2114 127 13 0 chr13 86532621 86532920 -15340249 + AluSc SINE Alu 1 303 -6 2036 104 10 27 chr13 86532971 86533269 -15339900 + AluSq SINE Alu 1 293 -20 1050 187 40 4 chr13 86533269 86533494 -15339675 - L1MB3 LINE L1 -9 6174 5942 218 246 109 94 chr13 86534156 86534294 -15338875 + MIR3 SINE MIR 53 192 -16 213 324 15 66 chr13 86534372 86534508 -15338661 - L2 LINE L2 -54 3218 3090 360 172 15 97 chr13 86534948 86535039 -15338130 + MER53 DNA DNA 56 134 -55 2265 122 0 3 chr13 86535039 86535350 -15337819 - AluSx SINE Alu 0 312 3 360 172 15 97 chr13 86535350 86535392 -15337777 + MER53 DNA DNA 134 178 -11 2106 134 0 3 chr13 86536303 86536602 -15336567 - AluSg SINE Alu -12 298 1 245 215 0 13 chr13 86536928 86537007 -15336162 + (TA)n Simple_repeat Simple_repeat 2 79 0 386 207 0 0 chr13 86537027 86537109 -15336060 - L1MC5 LINE L1 -48 7913 7832 1531 229 195 47 chr13 86537147 86537833 -15335336 - L1ME3 LINE L1 -8 6154 5367 522 249 57 16 chr13 86538162 86538355 -15334814 - L1MB8 LINE L1 -43 6135 5935 2620 188 34 16 chr13 86538536 86539100 -15334069 - MER90 LTR ERV1 0 575 2 249 180 49 0 chr13 86539370 86539431 -15333738 + L1M4 LINE L1 5223 5286 -860 2215 123 0 0 chr13 86539791 86540092 -15333077 - AluSx SINE Alu -11 301 1 997 211 68 100 chr13 86540171 86540206 -15332963 - MER34 LTR ERV1 0 542 507 2344 76 0 10 chr13 86540206 86540508 -15332661 - AluY SINE Alu -12 299 1 997 211 68 100 chr13 86540508 86541030 -15332139 - MER34 LTR ERV1 -35 507 3 2579 106 33 36 chr13 86541164 86541875 -15331294 - MER51A LTR ERV1 0 634 1 1959 166 3 0 chr13 86541877 86542208 -15330961 - MER51A-int LTR ERV1 -1 7815 7484 1315 310 33 36 chr13 86542380 86543449 -15329720 - PRIMA41-int LTR ERV1 -1621 6135 4621 1715 189 0 26 chr13 86544304 86544610 -15328559 - AluJo SINE Alu -5 307 10 2213 134 0 0 chr13 86544629 86544927 -15328242 - AluSx SINE Alu -14 298 1 1552 169 58 0 chr13 86545796 86546057 -15327112 - AluJo SINE Alu -36 276 1 1690 218 140 143 chr13 86546255 86547339 -15325830 - L2 LINE L2 0 3313 2097 912 86 0 9 chr13 86547339 86547455 -15325714 - AluSq/x SINE Alu -182 130 16 1690 218 140 143 chr13 86547455 86547841 -15325328 - L2 LINE L2 -1216 2097 1711 1708 154 37 0 chr13 86547842 86548140 -15325029 - AluSx SINE Alu 0 308 1 1827 157 0 7 chr13 86548160 86548460 -15324709 - AluY SINE Alu -10 301 4 239 151 116 12 chr13 86548503 86548589 -15324580 + MER96B DNA MER1_type? 82 176 -241 652 249 183 8 chr13 86548826 86549067 -15324102 - L2 LINE L2 -2937 377 95 2223 126 19 19 chr13 86549084 86549458 -15323711 - THE1C LTR MaLR -1 374 1 438 313 109 14 chr13 86549587 86549798 -15323371 - MIR SINE MIR 0 262 32 516 237 268 10 chr13 86550073 86550271 -15322898 + MIR SINE MIR 14 262 0 481 281 122 47 chr13 86550297 86550699 -15322470 - Tigger8 DNA MER2_type -215 451 20 738 300 31 65 chr13 86551232 86552120 -15321049 - PRIMA41-int LTR ERV1 -1315 4068 2970 6408 56 10 0 chr13 86552381 86553250 -15319919 + L1PA8 LINE L1 5307 6183 0 486 290 17 46 chr13 86553738 86554085 -15319084 - PRIMA41-int LTR ERV1 -4010 2666 1617 1506 136 8 38 chr13 86555208 86555473 -15317696 - Tigger3(Golem) DNA MER2_type -4 3025 2769 2138 106 0 37 chr13 86555474 86555795 -15317374 + AluSg SINE Alu 1 309 -1 332 293 32 57 chr13 86555877 86556034 -15317135 + L1MC4a LINE L1 5762 5914 -1894 1518 112 0 0 chr13 86556829 86557035 -15316134 - AluSq SINE Alu -107 206 1 1818 159 3 20 chr13 86557255 86557556 -15315613 - AluJo SINE Alu -12 300 5 7031 51 35 3 chr13 86557835 86558705 -15314464 + MER11D LTR ERVK 1 897 0 1888 152 17 77 chr13 86558868 86559283 -15313886 + MLT1B LTR MaLR 1 390 0 958 160 13 6 chr13 86559294 86559450 -15313719 + AluJb SINE Alu 130 286 -26 2290 109 0 0 chr13 86559779 86560081 -15313088 - AluSq SINE Alu -11 302 1 736 263 34 6 chr13 86560233 86560408 -15312761 - MIR SINE MIR -70 192 13 722 230 26 137 chr13 86560999 86561082 -15312087 - MIR SINE MIR -21 241 150 2301 101 3 0 chr13 86561082 86561379 -15311790 - AluSx SINE Alu -14 298 1 722 230 26 137 chr13 86561379 86561565 -15311604 - MIR SINE MIR -112 150 2 28 0 0 0 chr13 86562447 86562475 -15310694 + AT_rich Low_complexity Low_complexity 1 28 0 1675 165 3 40 chr13 86562475 86562772 -15310397 - AluJo SINE Alu -26 286 1 2069 148 3 0 chr13 86563453 86563757 -15309412 - AluSx SINE Alu -7 305 1 387 205 54 96 chr13 86563777 86563945 -15309224 - L1MC4a LINE L1 -1917 5891 5734 1747 171 0 54 chr13 86563945 86564260 -15308909 - AluJb SINE Alu -14 298 1 387 205 54 96 chr13 86564260 86564330 -15308839 - L1MC4a LINE L1 -2074 5734 5663 216 67 0 0 chr13 86566235 86566265 -15306904 + (T)n Simple_repeat Simple_repeat 1 30 0 521 26 316 0 chr13 86566265 86566341 -15306828 - HY3 scRNA scRNA -1 100 1 22 0 0 0 chr13 86567379 86567401 -15305768 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 86568307 86568336 -15304833 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 86568429 86568457 -15304712 + AT_rich Low_complexity Low_complexity 1 28 0 984 175 41 31 chr13 86568457 86568590 -15304579 + AluJo SINE Alu 1 138 -174 1610 170 101 0 chr13 86568590 86568867 -15304302 + AluJo SINE Alu 2 306 -6 984 175 41 31 chr13 86568867 86568927 -15304242 + AluJo SINE Alu 138 196 -116 493 236 167 35 chr13 86570648 86570822 -15302347 + MIR SINE MIR 47 243 -19 207 0 0 0 chr13 86571521 86571544 -15301625 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2339 88 3 3 chr13 86571615 86571921 -15301248 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr13 86572463 86572492 -15300677 + AT_rich Low_complexity Low_complexity 1 29 0 1032 275 126 28 chr13 86572580 86573180 -15299989 + L2 LINE L2 2633 3298 -15 2085 107 31 7 chr13 86573817 86574108 -15299061 + AluSg SINE Alu 1 298 -12 24 32 0 0 chr13 86574642 86574673 -15298496 + AT_rich Low_complexity Low_complexity 1 31 0 2257 113 0 0 chr13 86575001 86575303 -15297866 - AluSc SINE Alu -7 302 1 329 264 144 24 chr13 86578832 86578999 -15294170 - MIR SINE MIR -75 187 1 268 254 0 0 chr13 86579032 86579087 -15294082 + L3b LINE CR1 1515 1569 -14 23 0 0 0 chr13 86579713 86579736 -15293433 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr13 86579974 86580014 -15293155 + AT_rich Low_complexity Low_complexity 1 40 0 4061 184 42 40 chr13 86580234 86580576 -15292593 - L1MB5 LINE L1 -6 6168 5828 2463 71 0 10 chr13 86580576 86580887 -15292282 - AluY SINE Alu -3 308 1 4061 184 42 40 chr13 86580887 86581600 -15291569 - L1MB5 LINE L1 -346 5828 5118 1637 140 87 23 chr13 86581600 86581865 -15291304 + AluJo SINE Alu 1 282 -30 4061 184 42 40 chr13 86581865 86582696 -15290473 - L1MB5 LINE L1 -1056 5118 4287 237 272 44 59 chr13 86582844 86582980 -15290189 - MIR SINE MIR -67 195 62 25 51 0 0 chr13 86584197 86584236 -15288933 + AT_rich Low_complexity Low_complexity 1 39 0 2332 74 3 0 chr13 86584897 86585194 -15287975 - AluSp SINE Alu -15 298 1 267 320 0 13 chr13 86585720 86585795 -15287374 + G-rich Low_complexity Low_complexity 1 74 0 1904 237 56 16 chr13 86585917 86586414 -15286755 - L1ME1 LINE L1 -76 6090 5574 1096 110 121 0 chr13 86586445 86586615 -15286554 + MSTA LTR MaLR 1 191 -237 606 122 20 20 chr13 86586615 86586713 -15286456 + MER4A LTR ERV1 1 98 -566 1838 152 3 22 chr13 86586713 86587061 -15286108 + MER4A LTR ERV1 263 662 -2 4588 102 236 72 chr13 86587066 86588059 -15285110 + MER4A-int LTR ERV1 1 1155 -5443 1128 136 0 3 chr13 86588063 86588459 -15284710 + (TG)n Simple_repeat Simple_repeat 2 572 0 2039 101 11 0 chr13 86588625 86588927 -15284242 - AluSx SINE Alu 0 305 1 1611 217 32 45 chr13 86588935 86589145 -15284024 - MSTD LTR MaLR 0 396 192 1421 165 46 28 chr13 86589145 86589430 -15283739 - AluJb SINE Alu -22 290 1 1611 217 32 45 chr13 86589430 86589620 -15283549 - MSTD LTR MaLR -204 192 1 1513 170 11 4 chr13 86590177 86590447 -15282722 + AluJo SINE Alu 27 298 -14 862 156 0 15 chr13 86590497 86590632 -15282537 - FLAM_A SINE Alu 0 133 1 269 359 48 0 chr13 86590776 86590879 -15282290 - L2 LINE L2 -8 3264 3157 1726 174 38 8 chr13 86591887 86592254 -15280915 + L1MB3 LINE L1 5805 6182 -1 2126 90 0 7 chr13 86592261 86592573 -15280596 + AluSq SINE Alu 1 310 0 685 245 71 40 chr13 86592580 86592903 -15280266 - L1MC4a LINE L1 -1847 5961 5629 1836 149 82 25 chr13 86592904 86593259 -15279910 + THE1C LTR MaLR 1 375 0 2291 88 0 3 chr13 86593315 86593621 -15279548 - AluY SINE Alu -6 305 1 24 32 0 0 chr13 86593767 86593798 -15279371 + AT_rich Low_complexity Low_complexity 1 31 0 513 228 15 89 chr13 86594005 86594207 -15278962 - L2 LINE L2 -2 3311 3125 24 32 0 0 chr13 86594241 86594272 -15278897 + AT_rich Low_complexity Low_complexity 1 31 0 1433 140 26 8 chr13 86594272 86594536 -15278633 - L1PA13 LINE L1 -8 6155 5887 728 194 0 7 chr13 86594772 86594916 -15278253 + AluSp/q SINE Alu 171 313 0 2289 88 0 3 chr13 86595906 86596203 -15276966 - AluSq SINE Alu -17 296 1 4053 111 9 13 chr13 86596204 86596566 -15276603 - L1PA13 LINE L1 -335 5828 5466 2124 119 0 0 chr13 86596566 86596868 -15276301 - AluSx SINE Alu -10 302 1 4053 111 9 13 chr13 86596868 86597340 -15275829 - L1PA13 LINE L1 -697 5466 4999 29 0 0 0 chr13 86597554 86597583 -15275586 + AT_rich Low_complexity Low_complexity 1 29 0 801 144 0 0 chr13 86597583 86597701 -15275468 - FLAM_C SINE Alu -25 118 1 956 172 47 0 chr13 86597734 86597903 -15275266 - MLT1D LTR MaLR -328 177 1 482 285 77 41 chr13 86598084 86598305 -15274864 - L2 LINE L2 -8 3305 3077 245 284 27 0 chr13 86598386 86598460 -15274709 - MIR3 SINE MIR -23 185 110 810 191 48 7 chr13 86599438 86599585 -15273584 + FRAM SINE Alu 1 153 -13 1218 238 55 58 chr13 86599614 86599734 -15273435 + MER39 LTR ERV1 1 120 -587 2202 100 0 7 chr13 86599734 86600035 -15273134 - AluSx SINE Alu -12 300 2 1218 238 55 58 chr13 86600035 86600410 -15272759 + MER39 LTR ERV1 120 696 -11 1788 146 55 25 chr13 86600682 86601046 -15272123 + THE1C LTR MaLR 1 375 0 2159 81 0 0 chr13 86601383 86601678 -15271491 - AluSx SINE Alu 0 305 11 253 357 31 39 chr13 86602557 86602686 -15270483 + L2 LINE L2 3117 3244 -28 28 29 0 0 chr13 86603296 86603331 -15269838 + AT_rich Low_complexity Low_complexity 1 35 0 2296 81 3 0 chr13 86603476 86603773 -15269396 - AluSp SINE Alu -15 298 1 1716 174 0 3 chr13 86603872 86604177 -15268992 - AluJo SINE Alu -8 304 1 959 88 0 22 chr13 86604179 86604315 -15268854 - AluJo/FLAM SINE Alu -169 133 1 2250 81 3 0 chr13 86604689 86604987 -15268182 + AluSp SINE Alu 1 299 -14 180 77 0 0 chr13 86605428 86605454 -15267715 + (TTAGGG)n Simple_repeat Simple_repeat 2 27 0 2042 85 14 14 chr13 86606516 86606810 -15266359 - AluSx SINE Alu -18 294 1 236 88 118 0 chr13 86607012 86607046 -15266123 + Alu SINE Alu 77 114 -188 204 125 0 0 chr13 86607628 86607660 -15265509 + (T)n Simple_repeat Simple_repeat 1 32 0 1813 161 0 0 chr13 86607704 86607983 -15265186 + AluJo SINE Alu 1 279 -33 1575 207 119 12 chr13 86608196 86608607 -15264562 + MLT1C LTR MaLR 13 467 0 572 186 73 0 chr13 86609247 86609371 -15263798 + MER5A DNA MER1_type 41 173 -16 234 105 0 0 chr13 86609552 86609590 -15263579 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 566 255 99 36 chr13 86610515 86610576 -15262593 - MIR SINE MIR -6 256 200 1719 142 14 4 chr13 86610576 86610902 -15262267 - AluJo SINE Alu 0 330 2 566 255 99 36 chr13 86610902 86611030 -15262139 - MIR SINE MIR -62 200 53 444 164 29 15 chr13 86611373 86611477 -15261692 - LTR50 LTR ERVL 0 795 679 292 53 0 0 chr13 86611485 86611523 -15261646 - MLT2B1 LTR ERVL -11 509 472 1492 214 196 8 chr13 86611611 86612013 -15261156 - MLT2B1 LTR ERVL -41 479 2 822 156 0 0 chr13 86612215 86612343 -15260826 + FLAM_C SINE Alu 4 131 -12 809 159 0 0 chr13 86612447 86612573 -15260596 + AluJb SINE Alu 160 285 -27 1870 135 0 10 chr13 86613435 86613753 -15259416 - AluSx SINE Alu 0 315 1 2035 103 34 0 chr13 86613782 86614073 -15259096 - AluSp SINE Alu -12 301 1 455 211 54 90 chr13 86614263 86614429 -15258740 - LTR41 LTR ERVL -118 655 496 693 222 17 17 chr13 86614585 86614765 -15258404 - LTR41 LTR ERVL -589 184 5 1621 133 24 4 chr13 86614810 86615065 -15258104 + L1PA16 LINE L1 5829 6088 -78 262 61 0 0 chr13 86615060 86615093 -15258076 - L1P4 LINE L1 -312 5854 5822 * 234 111 0 0 chr13 86615106 86615151 -15258018 + LTR66 LTR ERVL 395 439 -171 1487 124 29 12 chr13 86615154 86615395 -15257774 - AluSx SINE Alu -20 292 48 1136 112 12 0 chr13 86615395 86615564 -15257605 - L1P4 LINE L1 -414 5752 5582 1878 54 0 25 chr13 86616048 86616287 -15256882 - AluSp SINE Alu -12 301 69 512 62 0 167 chr13 86616287 86616383 -15256786 - AluSp SINE Alu -165 148 69 327 87 0 0 chr13 86616728 86616774 -15256395 + MADE1 DNA Mariner 1 46 -34 430 273 10 0 chr13 86616776 86616875 -15256294 + L2 LINE L2 3197 3296 -17 405 91 0 0 chr13 86616886 86616941 -15256228 + MADE1 DNA Mariner 26 80 0 348 298 112 37 chr13 86617045 86617322 -15255847 - L2 LINE L2 -226 3046 2716 553 201 103 67 chr13 86617338 86617532 -15255637 - MIR SINE MIR -3 259 59 239 246 149 26 chr13 86617530 86617644 -15255525 - L2 LINE L2 -596 2718 2591 * 269 206 34 56 chr13 86617646 86617718 -15255451 - MER96B DNA MER1_type? 0 408 120 473 48 0 0 chr13 86617719 86617782 -15255387 + AluY SINE Alu 242 304 -7 664 148 40 34 chr13 86617782 86617793 -15255376 + MER96B DNA MER1_type? 86 95 -322 1871 130 7 20 chr13 86617793 86618093 -15255076 + AluSx SINE Alu 1 296 -16 664 148 40 34 chr13 86618093 86618230 -15254939 + MER96B DNA MER1_type? 95 235 -182 193 146 0 55 chr13 86619214 86619269 -15253900 + (CGGGG)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr13 86619472 86619494 -15253675 + GC_rich Low_complexity Low_complexity 1 22 0 1128 167 215 28 chr13 86619762 86620115 -15253054 - Charlie1 DNA MER1_type 0 2761 2343 419 151 0 27 chr13 86620113 86620186 -15252983 - Charlie1 DNA MER1_type -2690 71 1 * 301 311 110 30 chr13 86620218 86620382 -15252787 - MIR SINE MIR -59 203 27 2052 126 0 0 chr13 86620386 86620695 -15252474 - AluSx SINE Alu -3 309 1 2312 87 0 3 chr13 86620709 86621021 -15252148 - AluSq SINE Alu -2 311 1 3479 182 141 39 chr13 86621357 86621814 -15251355 - L1M4c LINE L1 -4755 1891 1482 2367 87 0 0 chr13 86621814 86622123 -15251046 - AluSc SINE Alu 0 309 1 3479 182 141 39 chr13 86622123 86622190 -15250979 - L1M4c LINE L1 -5164 1482 1423 1563 184 10 7 chr13 86622190 86622484 -15250685 - AluJb SINE Alu -17 295 1 3479 182 141 39 chr13 86622484 86622560 -15250609 - L1M4c LINE L1 -5223 1423 1356 1529 185 42 0 chr13 86622560 86622847 -15250322 - AluJo SINE Alu -11 301 3 3479 182 141 39 chr13 86622847 86623305 -15249864 - L1M4c LINE L1 -5290 1356 746 2885 229 76 15 chr13 86623306 86623980 -15249189 - L1M4c LINE L1 -5820 722 8 1599 244 104 9 chr13 86623993 86624567 -15248602 - L1M4 LINE L1 -2187 3959 3331 317 268 123 62 chr13 86624568 86624747 -15248422 - L1MB7 LINE L1 -11 6173 5984 * 774 205 90 6 chr13 86624742 86625034 -15248135 - L1M4 LINE L1 -2796 3350 3034 1862 164 0 0 chr13 86625034 86625332 -15247837 - AluJb SINE Alu -10 302 5 1365 220 0 11 chr13 86625378 86625660 -15247509 + AluJo SINE Alu 1 279 -33 363 78 0 0 chr13 86625660 86625711 -15247458 + (TAA)n Simple_repeat Simple_repeat 1 51 0 219 342 9 27 chr13 86626194 86626305 -15246864 + GA-rich Low_complexity Low_complexity 4 112 0 358 315 18 0 chr13 86626579 86626690 -15246479 - MER81 DNA DNA -1 113 1 24 67 0 0 chr13 86628057 86628102 -15245067 + AT_rich Low_complexity Low_complexity 1 45 0 201 121 0 0 chr13 86628380 86628413 -15244756 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 2072 108 0 41 chr13 86628472 86628786 -15244383 - AluSg SINE Alu -9 301 1 810 212 41 12 chr13 86628794 86628964 -15244205 - FAM SINE Alu 0 175 1 2063 109 0 3 chr13 86629315 86629635 -15243534 + AluSx SINE Alu 1 319 0 617 307 57 57 chr13 86630503 86630819 -15242350 + L2 LINE L2 2997 3312 -1 2590 139 16 29 chr13 86630873 86630920 -15242249 - L1MB3 LINE L1 0 6183 6137 2154 68 10 3 chr13 86630920 86631212 -15241957 - AluSx SINE Alu -18 294 1 2590 139 16 29 chr13 86631212 86631654 -15241515 - L1MB3 LINE L1 -46 6137 5700 1676 169 30 51 chr13 86631741 86632114 -15241055 + MLT1A1 LTR MaLR 1 365 0 251 256 131 22 chr13 86632303 86632440 -15240729 + MIR3 SINE MIR 51 202 -6 2075 114 7 7 chr13 86633139 86633507 -15239662 + AluSg SINE Alu 3 370 0 1835 208 37 51 chr13 86634237 86634294 -15238875 - MLT1D LTR MaLR 0 505 449 1280 139 69 9 chr13 86634294 86634510 -15238659 - MER30 DNA MER1_type -1 229 1 1835 208 37 51 chr13 86634510 86634961 -15238208 - MLT1D LTR MaLR -56 449 4 209 321 60 0 chr13 86635070 86635154 -15238015 + L2 LINE L2 2496 2584 -730 999 175 21 10 chr13 86635209 86635403 -15237766 - L1MB5 LINE L1 -42 6132 5937 247 147 0 103 chr13 86635431 86635499 -15237670 - Alu SINE Alu 0 302 242 889 169 0 7 chr13 86635499 86635641 -15237528 - FRAM SINE Alu -43 133 1 2002 128 62 0 chr13 86635644 86635964 -15237205 - L1MB5 LINE L1 -406 5768 5429 268 314 100 21 chr13 86635976 86636215 -15236954 + L2 LINE L2 2698 2955 -359 2291 99 7 0 chr13 86636320 86636614 -15236555 + AluY SINE Alu 5 300 -11 318 205 250 9 chr13 86636848 86636960 -15236209 + L2 LINE L2 3134 3272 0 21 36 0 0 chr13 86640860 86640888 -15232281 + AT_rich Low_complexity Low_complexity 1 28 0 439 290 190 0 chr13 86643418 86643618 -15229551 - MIR SINE MIR -20 242 5 1979 137 0 0 chr13 86643691 86643975 -15229194 + AluJb SINE Alu 3 286 -26 279 0 0 0 chr13 86643981 86644012 -15229157 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr13 86644245 86644267 -15228902 + GC_rich Low_complexity Low_complexity 1 22 0 230 296 37 0 chr13 86644699 86644780 -15228389 + L2 LINE L2 3203 3286 -27 2266 103 0 34 chr13 86644866 86645186 -15227983 + AluSg SINE Alu 1 309 -1 854 270 55 10 chr13 86646990 86647279 -15225890 + L1MC4 LINE L1 7621 7922 -120 333 165 15 143 chr13 86647362 86647463 -15225706 + L1MC4 LINE L1 7913 7995 -47 2156 123 3 0 chr13 86647463 86647764 -15225405 - AluSx SINE Alu -10 302 1 333 165 15 143 chr13 86647764 86647795 -15225374 + L1MC4 LINE L1 7995 8028 -14 1325 180 9 0 chr13 86647795 86648012 -15225157 - Tigger3(Golem) DNA MER2_type 0 3029 2811 186 43 0 0 chr13 86648014 86648037 -15225132 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2201 51 36 14 chr13 86648040 86648315 -15224854 - AluY SINE Alu -30 281 1 195 42 0 0 chr13 86648771 86648795 -15224374 + (TTC)n Simple_repeat Simple_repeat 2 25 0 28 0 0 0 chr13 86649953 86649981 -15223188 + AT_rich Low_complexity Low_complexity 1 28 0 1982 143 0 0 chr13 86649981 86650267 -15222902 - AluSx SINE Alu -26 286 1 760 291 69 61 chr13 86650865 86651257 -15221912 + MLT1K LTR MaLR 188 582 -6 1491 174 15 8 chr13 86651281 86651540 -15221629 + AluJb SINE Alu 41 301 -11 2261 58 3 58 chr13 86651741 86652049 -15221120 - AluSc SINE Alu -18 291 1 1114 273 85 61 chr13 86652066 86652608 -15220561 + L1ME LINE L1 656 1184 -5460 2263 113 3 10 chr13 86652608 86652919 -15220250 + AluSx SINE Alu 1 309 -3 1114 273 85 61 chr13 86652919 86653107 -15220062 + L1ME LINE L1 1184 1366 -5278 1729 135 110 3 chr13 86653107 86653389 -15219780 + AluSx SINE Alu 1 312 0 1114 273 85 61 chr13 86653389 86653406 -15219763 + L1ME LINE L1 1366 1381 -5263 2132 126 17 0 chr13 86653406 86653700 -15219469 + AluSx SINE Alu 1 299 -13 1114 273 85 61 chr13 86653700 86653724 -15219445 + L1ME LINE L1 1381 1416 -5228 623 205 84 0 chr13 86653721 86653887 -15219282 + L1MB5 LINE L1 5966 6145 -29 * 1486 262 107 9 chr13 86653893 86654564 -15218605 + L1ME LINE L1 1323 2058 -4588 23 0 0 0 chr13 86654625 86654648 -15218521 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr13 86654809 86654835 -15218334 + AT_rich Low_complexity Low_complexity 1 26 0 543 277 77 26 chr13 86655862 86656057 -15217112 + MIR SINE MIR 20 224 -38 49 18 0 0 chr13 86657384 86657440 -15215729 + AT_rich Low_complexity Low_complexity 1 56 0 24 32 0 0 chr13 86657645 86657676 -15215493 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr13 86658248 86658272 -15214897 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 86659746 86659769 -15213400 + (T)n Simple_repeat Simple_repeat 1 23 0 2026 149 0 0 chr13 86660326 86660622 -15212547 + AluJb SINE Alu 1 296 -16 2359 97 7 3 chr13 86660641 86660950 -15212219 + AluSx SINE Alu 1 310 -2 2281 102 0 7 chr13 86661346 86661641 -15211528 - AluSc SINE Alu -16 293 1 2158 120 0 23 chr13 86662250 86662549 -15210620 + AluSx SINE Alu 1 292 -20 1200 134 0 0 chr13 86662551 86662722 -15210447 + FAM SINE Alu 1 171 -4 653 287 115 20 chr13 86663166 86663662 -15209507 + L2 LINE L2 2633 3192 -121 2353 117 0 0 chr13 86663838 86664146 -15209023 + AluSx SINE Alu 1 308 -4 1007 167 0 46 chr13 86664539 86664713 -15208456 - FRAM SINE Alu 0 166 1 1881 141 21 7 chr13 86664834 86665117 -15208052 + AluJb SINE Alu 1 287 -25 7013 113 6 18 chr13 86665653 86666027 -15207142 + L1MA3 LINE L1 5097 5474 -831 2523 66 0 7 chr13 86666027 86666329 -15206840 - AluY SINE Alu -11 300 1 7013 113 6 18 chr13 86666329 86667171 -15205998 + L1MA3 LINE L1 5474 6300 -5 238 132 38 0 chr13 86667259 86667312 -15205857 + (CATA)n Simple_repeat Simple_repeat 4 58 0 1132 178 5 0 chr13 86667911 86668096 -15205073 + AluJb SINE Alu 81 266 -46 207 146 0 0 chr13 86668127 86668168 -15205001 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 1747 176 0 10 chr13 86668171 86668498 -15204671 + AluJb SINE Alu 1 312 0 2227 90 0 30 chr13 86669066 86669367 -15203802 - AluY SINE Alu -19 292 1 1137 75 0 0 chr13 86669367 86669501 -15203668 - AluY SINE Alu -177 134 1 277 204 0 0 chr13 86674781 86674835 -15198334 + MER116 DNA Mariner 1 54 -26 2948 160 28 40 chr13 86675463 86675523 -15197646 - L1MB7 LINE L1 -1 6183 6124 2335 93 7 3 chr13 86675523 86675833 -15197336 - AluY SINE Alu 0 311 1 2948 160 28 40 chr13 86675833 86676379 -15196790 - L1MB7 LINE L1 -60 6124 5584 290 307 61 18 chr13 86676445 86676559 -15196610 + L2 LINE L2 3134 3252 -20 21 36 0 0 chr13 86678351 86678379 -15194790 + AT_rich Low_complexity Low_complexity 1 28 0 1240 190 133 38 chr13 86678497 86678757 -15194412 - MER39 LTR ERV1 -22 685 388 2372 87 7 0 chr13 86678757 86679057 -15194112 - AluSx SINE Alu -8 304 3 1240 190 133 38 chr13 86679057 86679112 -15194057 - MER39 LTR ERV1 -319 388 340 572 175 79 16 chr13 86679112 86679238 -15193931 - MER39 LTR ERV1 -573 134 1 1621 181 51 0 chr13 86679475 86679751 -15193418 - AluJo SINE Alu -16 296 7 889 141 0 40 chr13 86679904 86680053 -15193116 + FLAM_C SINE Alu 1 143 0 199 204 93 0 chr13 86680414 86680468 -15192701 + MIR SINE MIR 124 182 -80 1711 129 97 7 chr13 86680608 86680886 -15192283 - AluSg SINE Alu -7 303 1 1986 131 40 3 chr13 86680886 86681184 -15191985 - AluSx SINE Alu -3 309 1 773 149 0 47 chr13 86681411 86681559 -15191610 - AluSg/x SINE Alu -2 308 168 24 0 0 0 chr13 86682055 86682079 -15191090 + AT_rich Low_complexity Low_complexity 1 24 0 2202 78 3 41 chr13 86684151 86684467 -15188702 + AluSp SINE Alu 1 305 0 2492 56 3 7 chr13 86685307 86685611 -15187558 - AluY SINE Alu -8 303 1 909 204 0 0 chr13 86685666 86685847 -15187322 - AluSx SINE Alu -3 307 127 829 86 29 0 chr13 86685947 86686052 -15187117 - AluSx SINE Alu -181 131 24 185 271 42 21 chr13 86686094 86686142 -15187027 - MIR SINE MIR -185 77 29 223 286 0 0 chr13 86686149 86686198 -15186971 - L2 LINE L2 -7 3306 3258 797 192 6 45 chr13 86686207 86686384 -15186785 - FRAM SINE Alu -6 170 1 2294 83 0 3 chr13 86686452 86686754 -15186415 + AluSq SINE Alu 1 301 -12 343 176 14 27 chr13 86687274 86687348 -15185821 + AluS SINE Alu 1 73 -229 2047 122 3 3 chr13 86687466 86687770 -15185399 - AluSc SINE Alu -5 304 1 1080 169 27 9 chr13 86688867 86689086 -15184083 - AluJo SINE Alu -3 309 87 2043 95 0 14 chr13 86689325 86689640 -15183529 - AluSg SINE Alu 0 311 1 2037 110 17 7 chr13 86690049 86690349 -15182820 - AluSx SINE Alu -9 303 1 202 273 34 23 chr13 86690398 86690486 -15182683 + (TTCA)n Simple_repeat Simple_repeat 3 91 0 712 196 206 19 chr13 86690543 86690752 -15182417 + MIR SINE MIR 11 258 -4 1645 166 176 33 chr13 86690752 86690880 -15182289 + MLT1C LTR MaLR 1 109 -358 2135 103 0 3 chr13 86690880 86691182 -15181987 + AluSg SINE Alu 1 301 -9 1645 166 176 33 chr13 86691182 86691451 -15181718 + MLT1C LTR MaLR 109 455 -12 2309 47 40 3 chr13 86691979 86692279 -15180890 - AluY SINE Alu 0 311 1 1982 108 35 0 chr13 86692948 86693235 -15179934 - AluSq SINE Alu -8 305 9 1772 182 16 40 chr13 86693250 86693469 -15179700 - MLT1A1 LTR MaLR 0 365 142 2373 63 13 0 chr13 86693469 86693770 -15179399 - AluSp SINE Alu -8 305 1 1814 91 76 4 chr13 86693769 86694044 -15179125 - AluSg SINE Alu 0 310 16 * 1772 182 16 40 chr13 86693770 86694198 -15178971 - MLT1A1 LTR MaLR -223 142 1 1184 246 124 61 chr13 86694423 86695012 -15178157 - HAL1 LINE L1 -592 1915 1282 2167 119 0 3 chr13 86695012 86695322 -15177847 - AluSx SINE Alu -3 309 1 1184 246 124 61 chr13 86695322 86695359 -15177810 - HAL1 LINE L1 -1225 1282 1249 1669 154 14 21 chr13 86695382 86695668 -15177501 - AluJo SINE Alu -28 284 1 804 122 8 0 chr13 86695671 86695794 -15177375 - AluJb SINE Alu -13 299 176 664 301 71 93 chr13 86695794 86696018 -15177151 - HAL1 LINE L1 -1464 1043 816 2104 99 0 0 chr13 86696018 86696334 -15176835 + AluSx SINE Alu 1 316 0 664 301 71 93 chr13 86696334 86696349 -15176820 - HAL1 LINE L1 -1691 816 802 1998 113 0 3 chr13 86696349 86696656 -15176513 + AluSx SINE Alu 1 306 0 664 301 71 93 chr13 86696656 86697110 -15176059 - HAL1 LINE L1 -1705 802 371 1291 153 205 4 chr13 86697110 86697359 -15175810 - AluSc SINE Alu 0 299 1 664 301 71 93 chr13 86697359 86697628 -15175541 - HAL1 LINE L1 -2136 371 98 419 243 13 26 chr13 86697704 86697856 -15175313 - L1MEc LINE L1 -2178 3951 3802 755 119 127 0 chr13 86697879 86697997 -15175172 - FLAM_A SINE Alu 0 133 1 2160 102 26 0 chr13 86698074 86698377 -15174792 - AluSx SINE Alu -1 311 1 1269 82 0 0 chr13 86698472 86698643 -15174526 - AluSp SINE Alu 0 313 143 1770 141 0 0 chr13 86698743 86699020 -15174149 - AluJb SINE Alu -28 284 8 431 306 33 54 chr13 86699054 86699296 -15173873 - L1MEc LINE L1 -2578 3551 3315 805 165 0 0 chr13 86699313 86699446 -15173723 - FLAM_C SINE Alu 0 133 1 195 42 0 0 chr13 86699633 86699657 -15173512 + (A)n Simple_repeat Simple_repeat 1 24 0 242 226 60 36 chr13 86699657 86699741 -15173428 - LTR48 LTR ERV1 -535 252 167 302 309 12 0 chr13 86699741 86699825 -15173344 - MER34 LTR ERV1 -452 90 6 520 236 55 106 chr13 86699855 86700092 -15173077 - L1MEc LINE L1 -3595 2534 2310 1985 102 10 36 chr13 86700114 86700419 -15172750 - AluSp SINE Alu -16 297 1 1540 158 30 24 chr13 86700421 86700718 -15172451 - AluJo SINE Alu -13 299 1 2125 100 0 3 chr13 86700785 86701076 -15172093 - AluSq SINE Alu -23 290 1 369 306 39 17 chr13 86701192 86701372 -15171797 - L1MEc LINE L1 -3852 2277 2094 335 323 62 36 chr13 86701424 86701619 -15171550 - L1MEc LINE L1 -4189 2121 1922 239 334 139 9 chr13 86701842 86702180 -15170989 - HAL1 LINE L1 -749 1758 1377 501 300 99 36 chr13 86702308 86702399 -15170770 - L1MEc LINE L1 -5027 1092 1008 2180 107 3 3 chr13 86702399 86702707 -15170462 - AluSq SINE Alu -5 308 1 501 300 99 36 chr13 86702707 86702838 -15170331 - L1MEc LINE L1 -5111 1008 856 1226 47 0 0 chr13 86702849 86702997 -15170172 - L1PA5 LINE L1 -8 6146 5999 452 322 78 53 chr13 86703136 86703775 -15169394 - L1MEc LINE L1 -5361 758 104 351 65 0 0 chr13 86703925 86703971 -15169198 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 1730 161 3 7 chr13 86708815 86709113 -15164056 + AluJo SINE Alu 3 299 -13 1177 149 0 68 chr13 86709149 86709211 -15163958 + AluJo SINE Alu 86 151 -161 2410 48 0 0 chr13 86709211 86709502 -15163667 + AluY SINE Alu 1 291 -20 1177 149 0 68 chr13 86709502 86709661 -15163508 + AluJo SINE Alu 151 292 -20 1996 115 14 0 chr13 86710521 86710808 -15162361 + AluSx SINE Alu 1 291 -21 2144 85 0 7 chr13 86710879 86711160 -15162009 + AluSg SINE Alu 1 279 -31 238 179 0 0 chr13 86711172 86711211 -15161958 - LTR67 LTR ERVL -10 547 509 835 131 23 23 chr13 86711658 86711788 -15161381 + FLAM_C SINE Alu 1 130 -3 232 250 0 0 chr13 86712855 86712911 -15160258 + T-rich Low_complexity Low_complexity 1 56 0 385 279 100 31 chr13 86713102 86713476 -15159693 - MLT1J LTR MaLR -2 509 80 * 412 252 65 7 chr13 86713461 86713600 -15159569 + MER115 DNA AcHobo 226 372 -321 1881 67 0 0 chr13 86713953 86714193 -15158976 + AluY SINE Alu 1 240 -71 2252 102 0 0 chr13 86714478 86714781 -15158388 - AluSx SINE Alu -9 303 1 196 235 59 0 chr13 86718678 86718746 -15154423 + MIR SINE MIR 163 234 -28 2125 111 0 0 chr13 86718927 86719224 -15153945 + AluSx SINE Alu 1 297 -15 2019 117 10 0 chr13 86719847 86720138 -15153031 + AluSq SINE Alu 2 295 -18 2089 111 0 0 chr13 86720317 86720614 -15152555 - AluY SINE Alu -2 309 13 1578 168 58 3 chr13 86720616 86720787 -15152382 - AluJb SINE Alu -4 308 113 216 0 0 0 chr13 86720787 86720811 -15152358 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1578 168 58 3 chr13 86720811 86720931 -15152238 - AluJb SINE Alu -199 113 1 2290 92 0 0 chr13 86722849 86723154 -15150015 + AluSx SINE Alu 1 305 -7 770 158 7 43 chr13 86723400 86723539 -15149630 + FLAM_C SINE Alu 2 135 -8 1457 151 45 64 chr13 86724235 86724547 -15148622 - AluJb SINE Alu -6 306 1 1155 104 0 71 chr13 86725063 86725246 -15147923 - AluSg SINE Alu -139 171 2 1087 131 51 0 chr13 86725254 86725429 -15147740 - AluSg/x SINE Alu -10 302 119 443 108 54 14 chr13 86725443 86725517 -15147652 - Tigger3(Golem) DNA MER2_type -2952 77 1 21 0 0 0 chr13 86726414 86726435 -15146734 + AT_rich Low_complexity Low_complexity 1 21 0 2255 94 0 0 chr13 86726747 86727046 -15146123 + AluSx SINE Alu 1 299 -13 2089 120 13 3 chr13 86727977 86728286 -15144883 - AluSp SINE Alu -1 312 1 322 274 258 16 chr13 86730452 86730638 -15142531 + MIR SINE MIR 8 238 -24 183 282 239 0 chr13 86731038 86731155 -15142014 - L2 LINE L2 -1 3312 3168 2143 102 23 0 chr13 86731635 86731939 -15141230 + AluSx SINE Alu 1 311 -1 312 267 22 11 chr13 86732206 86732296 -15140873 - MIR SINE MIR -49 213 123 1813 174 0 6 chr13 86732478 86732789 -15140380 + AluJo SINE Alu 2 310 -2 1149 161 3 97 chr13 86732895 86733194 -15139975 - MER58D DNA MER1_type -6 380 110 645 148 90 0 chr13 86783194 86783316 -15089853 - Tigger1 DNA MER2_type -290 2128 1996 1063 153 0 16 chr13 86783321 86783510 -15089659 - L1PB1 LINE L1 0 6151 5966 2270 108 3 0 chr13 86783512 86783808 -15089361 - AluSg SINE Alu -11 299 3 1267 195 28 7 chr13 86783891 86784178 -15088991 - L1MB1 LINE L1 -1 6167 5875 21 36 0 0 chr13 86784842 86784870 -15088299 + AT_rich Low_complexity Low_complexity 1 28 0 221 303 182 30 chr13 86785082 86785214 -15087955 + MER5B DNA MER1_type 37 177 -1 2143 215 12 62 chr13 86785924 86785977 -15087192 + MLT2B3 LTR ERVL 1 55 -460 1707 168 16 23 chr13 86785977 86786287 -15086882 + AluJb SINE Alu 1 308 -4 186 43 0 0 chr13 86786290 86786313 -15086856 + (GA)n Simple_repeat Simple_repeat 2 24 0 2143 215 12 62 chr13 86786313 86786852 -15086317 + MLT2B3 LTR ERVL 57 506 -9 379 299 145 58 chr13 86787421 86787662 -15085507 - MIR SINE MIR 0 262 1 1653 225 5 27 chr13 86787881 86788254 -15084915 - MLT1A1 LTR MaLR 0 365 1 674 90 0 180 chr13 86791387 86791565 -15081604 - Tigger4(Zombi) DNA MER2_type -98 2633 2488 1772 298 114 46 chr13 86791586 86792534 -15080635 + L2 LINE L2 1991 2997 -316 677 280 12 64 chr13 86792845 86793188 -15079981 + MER46C DNA MER2_type 6 330 -8 23 0 10 0 chr13 86793804 86793872 -15079297 + AT_rich Low_complexity Low_complexity 1 23 0 8097 85 2 32 chr13 86794049 86795285 -15077884 - HERV17 LTR ERV1 -1950 6676 5479 1218 260 26 55 chr13 86795969 86796501 -15076668 + L1M3b LINE L1 913 1411 -5728 3916 241 39 21 chr13 86797073 86798259 -15074910 + L1M3b LINE L1 1238 2472 -4737 725 233 98 5 chr13 86798876 86799069 -15074100 + MLT1H LTR MaLR 7 217 -332 216 267 0 0 chr13 86799409 86799454 -15073715 + polypurine Low_complexity Low_complexity 4 48 0 409 145 0 113 chr13 86799866 86800009 -15073160 + THE1A LTR MaLR 1 129 -235 2084 139 34 42 chr13 86800258 86800827 -15072342 - L1P4 LINE L1 -486 5679 5121 180 0 0 0 chr13 86800827 86800847 -15072322 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2084 139 34 42 chr13 86800847 86801106 -15072063 - L1P4 LINE L1 -1044 5121 4861 283 156 69 107 chr13 86801114 86801276 -15071893 - AluSg/x SINE Alu -16 284 147 227 317 39 10 chr13 86802530 86802634 -15070535 - LTR67 LTR ERVL -119 438 332 1684 204 46 14 chr13 86802983 86803494 -15069675 - L1M3 LINE L1 -468 5703 5174 532 113 0 21 chr13 86804125 86804222 -15068947 - L1P4 LINE L1 -693 5472 5378 1329 299 22 18 chr13 86804643 86805132 -15068037 - ERVL LTR ERVL -5082 682 192 2059 102 0 0 chr13 86805132 86805406 -15067763 + AluSc SINE Alu 1 274 -35 3574 183 10 7 chr13 86805568 86806799 -15066370 - L1P5 LINE L1 -401 5750 4513 3639 227 26 20 chr13 86807175 86808261 -15064908 + L1P LINE L1 2439 3530 -2616 1647 115 70 0 chr13 86808424 86808668 -15064501 + AluSx SINE Alu 43 303 -9 808 189 61 0 chr13 86808669 86808833 -15064336 - MLT-int LTR MaLR -1303 432 259 3746 95 7 9 chr13 86811470 86812030 -15061139 - L1PB1 LINE L1 -173 5978 5420 1879 181 83 23 chr13 86812128 86812527 -15060642 - MSTB1 LTR MaLR -9 423 1 231 377 66 9 chr13 86813710 86813922 -15059247 + HAL1 LINE L1 389 612 -1895 355 275 69 8 chr13 86814109 86814240 -15058929 - MIR SINE MIR -1 261 123 3881 142 10 3 chr13 86814344 86815019 -15058150 - Tigger1 DNA MER2_type -368 2050 1371 339 332 35 40 chr13 86815029 86815375 -15057794 + L1PA12 LINE L1 7 350 -7231 221 57 29 0 chr13 86816486 86816521 -15056648 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 760 198 17 59 chr13 86817460 86817697 -15055472 - Charlie5 DNA MER1_type 0 2624 2398 302 230 11 0 chr13 86818093 86818183 -15054986 + MLT1J2 LTR MaLR 70 262 -308 520 177 27 7 chr13 86818627 86818774 -15054395 + CT-rich Low_complexity Low_complexity 2 151 0 1498 74 0 52 chr13 86818943 86819174 -15053995 - HERV17 LTR ERV1 -7942 684 466 * 7284 73 6 6 chr13 86819172 86820175 -15052994 + HERV17 LTR ERV1 4349 5351 -3275 7012 60 7 0 chr13 86820591 86821632 -15051537 - L1PA6 LINE L1 -6 6148 5105 3355 171 13 10 chr13 86822469 86823072 -15050097 - MER6A DNA MER2_type 0 605 1 26 30 0 0 chr13 86823223 86823256 -15049913 + AT_rich Low_complexity Low_complexity 1 33 0 705 244 34 30 chr13 86823909 86824143 -15049026 + MLT1B LTR MaLR 3 237 -153 411 333 26 6 chr13 86824503 86824659 -15048510 + MIR SINE MIR 2 160 -102 2629 181 29 11 chr13 86826151 86826765 -15046404 - L1MC3 LINE L1 -1 7784 7160 1682 175 19 0 chr13 86826766 86827074 -15046095 - MLT1C LTR MaLR -1 466 153 240 211 40 23 chr13 86827468 86827643 -15045526 + (TA)n Simple_repeat Simple_repeat 1 178 0 13530 92 14 5 chr13 86828042 86828379 -15044790 + L1P LINE L1 1976 2309 -3837 180 0 0 0 chr13 86828379 86828399 -15044770 + (CA)n Simple_repeat Simple_repeat 1 20 0 13530 92 14 5 chr13 86828399 86830116 -15043053 + L1P LINE L1 2309 4048 -2098 6090 206 16 17 chr13 86830416 86831919 -15041250 + L1P LINE L1 3387 4888 -1258 1792 142 25 11 chr13 86831919 86832193 -15040976 + AluSc SINE Alu 1 278 -31 448 244 74 74 chr13 86832726 86832968 -15040201 + MLT1H LTR MaLR 82 323 -226 239 202 36 80 chr13 86832955 86833103 -15040066 + MLT1H LTR MaLR 444 533 -16 * 285 289 94 0 chr13 86833121 86833249 -15039920 + MIR SINE MIR 123 262 0 217 244 22 56 chr13 86833252 86833342 -15039827 - MIR SINE MIR -105 157 71 2570 147 50 59 chr13 86833574 86834171 -15038998 + LTR9 LTR ERV1 10 601 -11 467 287 40 23 chr13 86834247 86834421 -15038748 + MIR SINE MIR 66 242 -20 7121 130 45 25 chr13 86934773 86935381 -14937788 - L1M4c LINE L1 -5119 1265 670 2241 116 3 3 chr13 86935381 86935691 -14937478 - AluSg SINE Alu 0 310 1 2209 118 3 6 chr13 86935698 86936011 -14937158 - AluSx SINE Alu 0 312 1 7121 130 45 25 chr13 86936011 86936620 -14936549 - L1M4c LINE L1 -5719 665 16 1712 93 4 32 chr13 86937266 86937514 -14935655 - AluSq SINE Alu 0 313 73 2503 69 0 0 chr13 86937514 86937815 -14935354 - AluY SINE Alu -8 303 1 625 105 0 0 chr13 86937815 86937901 -14935268 - AluSq SINE Alu -226 87 2 2185 118 0 0 chr13 86937931 86938218 -14934951 - AluSc SINE Alu -22 287 1 1748 166 6 46 chr13 86938220 86938545 -14934624 - AluJb SINE Alu 0 312 1 568 259 127 0 chr13 86938594 86938752 -14934417 + MER45A DNA AcHobo 1 178 0 242 264 136 50 chr13 86939035 86939175 -14933994 - MIR SINE MIR -30 232 81 2063 139 3 3 chr13 86939613 86939916 -14933253 + AluJb SINE Alu 1 303 -9 1983 128 17 41 chr13 86940519 86940864 -14932305 + MER1B DNA MER1_type 1 337 0 1944 152 0 26 chr13 86941146 86941455 -14931714 + AluJo SINE Alu 1 301 -11 291 211 42 0 chr13 86942125 86942196 -14930973 + MIR SINE MIR 81 154 -108 1753 170 0 0 chr13 86942736 86943007 -14930162 - AluJo SINE Alu -41 271 1 2536 66 0 3 chr13 86943080 86943408 -14929761 + AluY SINE Alu 1 327 0 2115 126 0 3 chr13 86943411 86943705 -14929464 + AluSx SINE Alu 1 293 -19 301 364 136 0 chr13 86943745 86943943 -14929226 - L3 LINE CR1 -772 805 581 269 260 55 0 chr13 86943988 86944061 -14929108 - MIR SINE MIR -76 186 110 2004 116 24 14 chr13 86944078 86944371 -14928798 - AluSq SINE Alu -17 296 1 2410 87 0 0 chr13 86944680 86944978 -14928191 - AluSq SINE Alu -2 311 14 205 298 0 0 chr13 86945081 86945128 -14928041 - MIR SINE MIR -165 97 51 * 297 353 24 34 chr13 86945118 86945325 -14927844 - L3 LINE CR1 -1308 269 65 21 107 0 0 chr13 86946074 86946158 -14927011 + AT_rich Low_complexity Low_complexity 1 84 0 2300 97 10 0 chr13 86946338 86946638 -14926531 - AluSq SINE Alu -10 303 1 459 204 100 16 chr13 86946701 86946941 -14926228 - MER5C DNA MER1_type -1 323 4 740 298 101 43 chr13 86946986 86947589 -14925580 - L1MEd LINE L1 -3302 2827 2260 2175 91 21 7 chr13 86947589 86947874 -14925295 - AluY SINE Alu -22 289 1 740 298 101 43 chr13 86947874 86947912 -14925257 - L1MEd LINE L1 -3869 2260 2226 2339 100 0 0 chr13 86947912 86948212 -14924957 - AluSx SINE Alu -12 300 1 740 298 101 43 chr13 86948212 86948241 -14924928 - L1MEd LINE L1 -3903 2226 2117 26 0 0 0 chr13 86948321 86948347 -14924822 + AT_rich Low_complexity Low_complexity 1 26 0 2336 79 0 7 chr13 86948347 86948668 -14924501 - AluY SINE Alu 0 311 1 2062 115 0 30 chr13 86948671 86948976 -14924193 - AluSq SINE Alu -17 296 1 1857 157 7 4 chr13 86949422 86949702 -14923467 + AluSx SINE Alu 1 281 -31 791 239 43 62 chr13 86949926 86950225 -14922944 - L1MEd LINE L1 -4864 1255 963 2250 115 0 13 chr13 86950225 86950539 -14922630 - AluSx SINE Alu 0 312 3 791 239 43 62 chr13 86950539 86950607 -14922562 - L1MEd LINE L1 -5156 963 895 2194 82 39 0 chr13 86950661 86950943 -14922226 - AluY SINE Alu -18 293 1 296 321 58 47 chr13 86951195 86951254 -14921915 - L1MEd LINE L1 -5359 760 703 470 186 20 20 chr13 86951254 86951356 -14921813 - U13 snRNA snRNA -2 102 1 296 321 58 47 chr13 86951356 86951486 -14921683 - L1MEd LINE L1 -5416 703 569 2283 109 6 0 chr13 86951641 86951952 -14921217 - AluSq SINE Alu 0 313 1 1987 136 0 10 chr13 86952089 86952391 -14920778 - AluSx SINE Alu -13 299 1 1379 152 0 22 chr13 86952395 86952626 -14920543 - AluJo SINE Alu 0 312 87 931 263 108 42 chr13 86952655 86952801 -14920368 - HAL1 LINE L1 -13 2494 2359 2247 99 0 7 chr13 86952801 86953093 -14920076 - AluSg1 SINE Alu -18 291 2 931 263 108 42 chr13 86953093 86953398 -14919771 - HAL1 LINE L1 -148 2359 2013 29654 45 4 2 chr13 86953405 86957823 -14915346 - HAL1b LINE L1 0 6154 370 927 285 28 3 chr13 86957839 86958130 -14915039 - HAL1 LINE L1 -531 1976 1679 544 259 41 78 chr13 86958672 86958915 -14914254 + MIR SINE MIR 8 241 -21 315 0 0 0 chr13 86960232 86960267 -14912902 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr13 86960772 86960807 -14912362 + AT_rich Low_complexity Low_complexity 1 35 0 2160 107 3 3 chr13 86961337 86961628 -14911541 + AluSx SINE Alu 1 291 -21 1961 160 0 0 chr13 86961907 86962215 -14910954 - AluSx SINE Alu 0 310 3 1910 176 0 0 chr13 86962697 86962999 -14910170 + AluJb SINE Alu 1 302 -10 878 211 5 35 chr13 86963764 86963963 -14909206 - MIR SINE MIR -10 252 60 238 238 0 88 chr13 86964268 86964348 -14908821 + L2 LINE L2 3197 3269 -3 282 29 0 0 chr13 86964882 86964917 -14908252 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 182 0 0 chr13 86966640 86966684 -14906485 + (TA)n Simple_repeat Simple_repeat 2 45 0 249 83 0 0 chr13 86966694 86966730 -14906439 + (CA)n Simple_repeat Simple_repeat 2 37 0 603 267 90 71 chr13 86967474 86967908 -14905261 + MLT1K LTR MaLR 96 537 -51 2304 108 0 6 chr13 86967917 86968231 -14904938 + AluSx SINE Alu 1 312 0 2410 86 3 0 chr13 86969060 86969364 -14903805 + AluSp SINE Alu 1 305 -8 970 192 28 16 chr13 86969396 86969578 -14903591 - MLT1A2 LTR MaLR -2 372 189 404 125 62 0 chr13 86969595 86969659 -14903510 - MLT1A2 LTR MaLR -306 68 1 307 229 173 39 chr13 86970637 86970816 -14902353 + MLT1L LTR MaLR 409 611 -4 280 297 36 0 chr13 86970894 86971005 -14902164 + MIR SINE MIR 118 232 -30 198 330 147 5 chr13 86971299 86971496 -14901673 + L3 LINE CR1 1180 1404 -173 3647 141 19 0 chr13 86972081 86972669 -14900500 - L1MB3 LINE L1 -11 6172 5574 243 223 64 53 chr13 86972929 86973023 -14900146 - MIR SINE MIR -20 242 148 389 315 17 58 chr13 86973239 86973553 -14899616 - L1MC/D LINE L1 -430 5691 5551 472 309 56 28 chr13 86973796 86974045 -14899124 + MIR SINE MIR 3 258 -4 1873 176 130 32 chr13 86974705 86975143 -14898026 + L1MB2 LINE L1 5687 6167 -4 1821 167 3 3 chr13 86975400 86975711 -14897458 - AluJo SINE Alu -1 311 1 33 56 0 0 chr13 86976491 86976545 -14896624 + AT_rich Low_complexity Low_complexity 1 54 0 195 395 23 8 chr13 86977431 86977560 -14895609 - L2 LINE L2 -8 3264 3134 229 351 101 13 chr13 86977755 86978071 -14895098 - L2 LINE L2 -338 2976 2633 658 245 64 5 chr13 86979305 86979582 -14893587 + MER46C DNA MER2_type 5 330 -8 391 282 141 24 chr13 86979766 86979936 -14893233 + MIR3 SINE MIR 16 205 -3 532 274 16 83 chr13 86980825 86981077 -14892092 + MIR SINE MIR 1 235 -27 1783 180 3 20 chr13 86981766 86982071 -14891098 + AluJb SINE Alu 1 300 -12 1729 166 22 4 chr13 86982076 86982354 -14890815 + AluJo SINE Alu 3 285 -27 964 163 4 117 chr13 86982687 86982927 -14890242 + AluJo SINE Alu 87 299 -13 1978 121 32 7 chr13 86982929 86983209 -14889960 + AluSx SINE Alu 1 287 -25 38 22 0 0 chr13 86983209 86983254 -14889915 + AT_rich Low_complexity Low_complexity 1 45 0 2252 154 20 0 chr13 86983817 86984174 -14888995 + MLT1A1 LTR MaLR 1 364 -1 395 111 0 14 chr13 86984589 86984661 -14888508 + (GGAGA)n Simple_repeat Simple_repeat 2 72 0 2618 49 10 0 chr13 86984702 86985010 -14888159 + AluY SINE Alu 1 311 0 1931 150 3 3 chr13 86985046 86985332 -14887837 + AluJb SINE Alu 1 286 -26 336 136 12 25 chr13 86985332 86985413 -14887756 + GA-rich Low_complexity Low_complexity 1 80 0 1005 301 81 8 chr13 86985473 86985772 -14887397 + MLT1J1 LTR MaLR 1 337 -109 378 42 0 0 chr13 86985772 86985820 -14887349 + (CA)n Simple_repeat Simple_repeat 2 49 0 1005 301 81 8 chr13 86985820 86985916 -14887253 + MLT1J1 LTR MaLR 337 425 -21 283 319 42 7 chr13 86986099 86986243 -14886926 - L1ME4a LINE L1 -199 5922 5774 1858 132 38 28 chr13 86986389 86986678 -14886491 + AluJo SINE Alu 1 292 -20 468 0 0 0 chr13 86986742 86986794 -14886375 + (TA)n Simple_repeat Simple_repeat 1 52 0 2875 168 30 16 chr13 86986795 86987300 -14885869 - MLT2B2 LTR ERVL -2 513 2 240 298 67 10 chr13 86988589 86988693 -14884476 + L2 LINE L2 3173 3282 -31 231 238 16 0 chr13 86989185 86989248 -14883921 + MLT1F LTR MaLR 20 83 -459 660 211 80 49 chr13 86989364 86989600 -14883569 + MLT1H1 LTR MaLR 286 548 0 1063 225 148 13 chr13 86990084 86990470 -14882699 - HAL1 LINE L1 -50 2457 2020 698 190 0 33 chr13 86990569 86990690 -14882479 - FLAM_A SINE Alu -16 117 1 1719 134 63 46 chr13 86990693 86991044 -14882125 - L1MC2 LINE L1 -237 6107 5751 837 275 128 27 chr13 86991043 86991417 -14881752 - HAL1 LINE L1 -480 2027 1616 * 455 282 62 20 chr13 86992558 86992753 -14880416 + MIR SINE MIR 58 260 -2 1914 187 33 28 chr13 86993416 86993811 -14879358 + MLT2C1 LTR ERVL 1 397 0 313 309 86 19 chr13 86997356 86997518 -14875651 + MIR3 SINE MIR 29 201 -7 250 323 39 16 chr13 86997795 86997922 -14875247 + L3 LINE CR1 1447 1576 -1 1104 194 99 91 chr13 86998147 86998622 -14874547 + MLT1D LTR MaLR 27 505 0 1129 89 57 0 chr13 86998729 86998913 -14874256 + L1PA10 LINE L1 5998 6190 0 189 154 15 62 chr13 87000160 87000225 -14872944 + A-rich Low_complexity Low_complexity 2 63 0 303 93 0 0 chr13 87000314 87000357 -14872812 + (TA)n Simple_repeat Simple_repeat 2 44 0 2441 87 7 3 chr13 87000357 87000666 -14872503 - AluSq SINE Alu -3 310 1 2121 114 3 41 chr13 87001009 87001325 -14871844 - AluSc SINE Alu -5 304 1 686 234 158 56 chr13 87002525 87002947 -14870222 - MLT1J LTR MaLR -16 495 1 222 213 0 21 chr13 87003007 87003054 -14870115 + L2 LINE L2 3230 3275 -38 2195 27 4 0 chr13 87004121 87004378 -14868791 + L1PA4 LINE L1 5898 6155 0 1791 179 0 13 chr13 87004491 87004792 -14868377 + AluJb SINE Alu 1 297 -15 195 219 260 0 chr13 87005707 87005780 -14867389 - MIR3 SINE MIR -4 204 113 2429 73 0 13 chr13 87005963 87006264 -14866905 - AluY SINE Alu -14 297 1 199 374 39 44 chr13 87006513 87006695 -14866474 + L3 LINE CR1 1098 1278 -299 182 281 91 74 chr13 87006697 87006818 -14866351 + L3 LINE CR1 1452 1574 -3 1688 93 58 25 chr13 87007005 87007283 -14865886 - L1MA2 LINE L1 0 6304 6018 605 73 44 88 chr13 87007402 87007539 -14865630 - L1MA2 LINE L1 -212 6092 5962 855 150 0 0 chr13 87007845 87007972 -14865197 + FLAM_C SINE Alu 1 127 -16 2113 134 26 3 chr13 87007991 87008296 -14864873 + AluJb SINE Alu 1 312 0 806 212 56 98 chr13 87008809 87008910 -14864259 - MER39 LTR ERV1 -2 705 601 2289 105 7 0 chr13 87008910 87009215 -14863954 - AluSx SINE Alu -5 307 1 806 212 56 98 chr13 87009215 87009319 -14863850 - MER39 LTR ERV1 -106 601 494 2299 115 0 6 chr13 87009319 87009633 -14863536 - AluSx SINE Alu 0 312 1 806 212 56 98 chr13 87009633 87009952 -14863217 - MER39 LTR ERV1 -213 494 1 760 228 0 0 chr13 87010286 87010435 -14862734 + FAM SINE Alu 11 159 -26 461 231 50 25 chr13 87010499 87010659 -14862510 - MIR SINE MIR -74 188 25 233 220 20 0 chr13 87010708 87010758 -14862411 + L1ME LINE L1 5617 5667 -454 481 271 157 37 chr13 87010786 87011085 -14862084 + L2 LINE L2 2978 3312 -1 2327 104 0 0 chr13 87011120 87011417 -14861752 - AluSx SINE Alu -15 297 1 241 152 45 76 chr13 87011624 87011690 -14861479 - LTR67 LTR ERVL -47 510 447 232 252 101 65 chr13 87011765 87011904 -14861265 + MIR SINE MIR 77 220 -42 523 200 0 9 chr13 87013578 87013688 -14859481 + FAM SINE Alu 73 181 -4 712 84 0 0 chr13 87013802 87013897 -14859272 - AluY SINE Alu -7 304 210 291 54 0 0 chr13 87015468 87015505 -14857664 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2137 131 3 0 chr13 87016372 87016678 -14856491 + AluSx SINE Alu 1 307 -5 1768 164 0 10 chr13 87016745 87017037 -14856132 + AluJo SINE Alu 1 289 -23 4598 158 20 48 chr13 87017479 87018606 -14854563 + L1MB4 LINE L1 4959 6060 -120 2342 93 20 0 chr13 87018606 87018906 -14854263 + AluSq SINE Alu 1 306 -7 4598 158 20 48 chr13 87018906 87019014 -14854155 + L1MB4 LINE L1 6060 6169 -11 3644 177 24 19 chr13 87019024 87019748 -14853421 + L1MB8 LINE L1 5321 6047 -131 1012 177 12 0 chr13 87019755 87019919 -14853250 - FRAM SINE Alu -11 165 1 676 144 42 8 chr13 87019920 87020038 -14853131 + L1MB8 LINE L1 6052 6173 -5 401 179 28 47 chr13 87020124 87020230 -14852939 - L1MC5 LINE L1 -27 7934 7831 243 150 0 0 chr13 87020495 87020535 -14852634 - L1MC4 LINE L1 -1656 6386 6347 * 384 169 14 0 chr13 87020526 87020608 -14852561 - L1ME2 LINE L1 0 6166 6081 2137 136 3 0 chr13 87024145 87024453 -14848716 - AluSx SINE Alu -3 309 1 884 107 16 0 chr13 87024548 87024670 -14848499 + AluSx SINE Alu 1 124 -188 1484 113 0 0 chr13 87024772 87024966 -14848203 + AluSx SINE Alu 100 293 -17 1423 167 33 49 chr13 87027692 87028021 -14845148 + MER33 DNA MER1_type 1 324 0 216 97 0 0 chr13 87028861 87028892 -14844277 + (GGA)n Simple_repeat Simple_repeat 3 33 0 21 0 0 0 chr13 87029153 87029174 -14843995 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr13 87032580 87032605 -14840564 + (TG)n Simple_repeat Simple_repeat 2 26 0 200 163 23 0 chr13 87036027 87036070 -14837099 + A-rich Low_complexity Low_complexity 3 46 0 200 182 0 0 chr13 87036071 87036104 -14837065 + GA-rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr13 87037868 87037891 -14835278 + AT_rich Low_complexity Low_complexity 1 23 0 210 71 0 0 chr13 87039629 87039657 -14833512 + (A)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr13 87043708 87043730 -14829439 + (T)n Simple_repeat Simple_repeat 1 22 0 2173 109 0 3 chr13 87043778 87044080 -14829089 + AluSg SINE Alu 1 301 -9 299 324 28 49 chr13 87044246 87044388 -14828781 - MIR3 SINE MIR -25 183 45 2226 92 10 0 chr13 87045207 87045510 -14827659 - AluSg SINE Alu -4 306 1 23 0 0 0 chr13 87046129 87046152 -14827017 + AT_rich Low_complexity Low_complexity 1 23 0 423 214 32 32 chr13 87046180 87046306 -14826863 + L1MB7 LINE L1 6059 6184 0 232 143 36 0 chr13 87047651 87047707 -14825462 + (TA)n Simple_repeat Simple_repeat 1 58 0 2210 95 10 0 chr13 87047707 87048003 -14825166 - AluSx SINE Alu -13 299 1 582 267 64 32 chr13 87048004 87048191 -14824978 - MIR SINE MIR -57 205 13 1699 129 40 18 chr13 87049083 87049361 -14823808 - AluJo SINE Alu -28 284 1 31 68 0 0 chr13 87049716 87049775 -14823394 + AT_rich Low_complexity Low_complexity 1 59 0 1725 147 0 33 chr13 87050011 87050317 -14822852 + AluJb SINE Alu 1 296 -16 195 139 0 0 chr13 87050593 87050629 -14822540 + (CAGGC)n Simple_repeat Simple_repeat 3 38 0 2248 88 0 0 chr13 87050877 87051173 -14821996 + AluSg SINE Alu 1 296 -14 751 143 48 0 chr13 87051645 87051771 -14821398 - AluJb SINE Alu -22 290 159 302 287 56 127 chr13 87052024 87052348 -14820821 + L2 LINE L2 2945 3245 -27 235 311 111 50 chr13 87052684 87053191 -14819978 - L2 LINE L2 -16 3256 2691 204 167 0 48 chr13 87053980 87054022 -14819147 + (CACCAT)n Simple_repeat Simple_repeat 5 44 0 326 289 62 8 chr13 87054477 87054605 -14818564 + L2 LINE L2 3138 3272 0 293 253 161 49 chr13 87054768 87054930 -14818239 - MER5A DNA MER1_type -5 184 5 333 309 15 52 chr13 87054950 87055086 -14818083 + MIR SINE MIR 19 149 -113 1641 133 23 4 chr13 87055122 87055385 -14817784 + AluJb SINE Alu 9 276 -36 933 149 22 110 chr13 87055413 87055496 -14817673 + L1MB2 LINE L1 5961 6050 -136 2078 117 3 0 chr13 87055496 87055787 -14817382 - AluSx SINE Alu -14 298 7 933 149 22 110 chr13 87055787 87055959 -14817210 + L1MB2 LINE L1 6050 6186 0 394 254 18 9 chr13 87055959 87056069 -14817100 + MIR SINE MIR 152 262 0 2030 87 14 11 chr13 87056106 87056393 -14816776 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr13 87056393 87056417 -14816752 + AT_rich Low_complexity Low_complexity 1 24 0 284 244 39 142 chr13 87057835 87057962 -14815207 + MIR3 SINE MIR 44 157 -51 211 343 41 0 chr13 87058009 87058082 -14815087 + MIR3 SINE MIR 133 208 0 2166 101 0 7 chr13 87058108 87058406 -14814763 - AluSx SINE Alu -16 296 1 24 67 0 0 chr13 87063709 87063754 -14809415 + GC_rich Low_complexity Low_complexity 1 45 0 30 27 0 0 chr13 87063799 87063836 -14809333 + GC_rich Low_complexity Low_complexity 1 37 0 201 244 22 0 chr13 87064528 87064573 -14808596 - L2 LINE L2 0 3313 3268 1985 97 25 4 chr13 87065302 87065607 -14807562 + AluSq SINE Alu 1 311 0 196 350 141 15 chr13 87066298 87066504 -14806665 + L2 LINE L2 2916 3147 -125 278 324 56 63 chr13 87066638 87066780 -14806389 + MIR SINE MIR 44 184 -78 340 278 37 0 chr13 87066926 87067034 -14806135 + LTR16A LTR ERVL 261 372 -78 850 140 124 5 chr13 87067135 87067321 -14805848 + L1MB3 LINE L1 5969 6176 -7 22 0 0 0 chr13 87067321 87067343 -14805826 + AT_rich Low_complexity Low_complexity 1 22 0 273 209 0 0 chr13 87067396 87067439 -14805730 + L2 LINE L2 3210 3252 -20 2081 126 0 0 chr13 87067555 87067865 -14805304 - AluSx SINE Alu -2 310 1 236 279 12 81 chr13 87068140 87068226 -14804943 + MER91C DNA MER1_type 26 105 -35 204 279 115 0 chr13 87068245 87068306 -14804863 - MIR SINE MIR -106 102 35 1901 104 0 18 chr13 87069252 87069285 -14803884 - AluSx SINE Alu -2 310 278 222 62 0 0 chr13 87069285 87069317 -14803852 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1901 104 0 18 chr13 87069317 87069563 -14803606 - AluSx SINE Alu -34 278 36 369 153 0 0 chr13 87071009 87071081 -14802088 + (CA)n Simple_repeat Simple_repeat 1 72 0 1273 137 0 47 chr13 87071476 87071709 -14801460 + AluJo SINE Alu 86 307 -5 376 256 12 12 chr13 87071790 87071876 -14801293 + MER5B DNA MER1_type 13 98 -80 183 152 30 0 chr13 87071873 87071906 -14801263 - MIR3 SINE MIR -49 159 126 * 195 200 0 0 chr13 87073005 87073040 -14800129 - L2 LINE L2 -9 3263 3229 1749 122 0 28 chr13 87073414 87073700 -14799469 - AluJb SINE Alu -22 290 13 231 204 0 57 chr13 87073769 87073857 -14799312 + L1ME4a LINE L1 6039 6121 0 2086 90 40 10 chr13 87074061 87074362 -14798807 - AluSx SINE Alu -2 310 1 286 314 166 22 chr13 87074558 87074787 -14798382 + L1ME4a LINE L1 5616 5877 -244 973 220 54 9 chr13 87074813 87075036 -14798133 + MIR SINE MIR 29 261 -1 391 256 30 8 chr13 87075077 87075210 -14797959 + L1ME4a LINE L1 5970 6105 -16 988 201 129 19 chr13 87075218 87075482 -14797687 + AluJo SINE Alu 5 297 -15 247 303 225 0 chr13 87076401 87076490 -14796679 + L2 LINE L2 3205 3313 0 689 194 123 7 chr13 87076887 87077042 -14796127 + MIR SINE MIR 79 251 -11 409 229 66 33 chr13 87077291 87077413 -14795756 - MER117 DNA MER1_type 0 197 72 241 240 0 0 chr13 87077397 87077447 -14795722 - MER117 DNA MER1_type -76 121 72 * 229 240 0 0 chr13 87077431 87077481 -14795688 - MER117 DNA MER1_type -76 121 72 * 229 240 0 0 chr13 87077465 87077515 -14795654 - MER117 DNA MER1_type -76 121 72 292 269 13 13 chr13 87077533 87077611 -14795558 - MER117 DNA MER1_type -76 121 44 424 215 122 39 chr13 87077881 87078044 -14795125 + MIR SINE MIR 16 204 -58 221 105 0 158 chr13 87078303 87078379 -14794790 + (GGGA)n Simple_repeat Simple_repeat 1 64 0 370 253 0 48 chr13 87078816 87079002 -14794167 + (TCTCTG)n Simple_repeat Simple_repeat 3 179 0 269 270 22 34 chr13 87078964 87079142 -14794027 + CT-rich Low_complexity Low_complexity 4 179 0 * 26 0 0 0 chr13 87080279 87080305 -14792864 + AT_rich Low_complexity Low_complexity 1 26 0 270 62 0 0 chr13 87080305 87080337 -14792832 - AluJo SINE Alu -23 279 248 893 145 7 7 chr13 87080338 87080490 -14792679 - AluJo SINE Alu -160 152 1 21 0 0 0 chr13 87080493 87080514 -14792655 + AT_rich Low_complexity Low_complexity 1 21 0 816 156 0 22 chr13 87080517 87080652 -14792517 + FLAM_A SINE Alu 1 132 -1 2129 90 17 7 chr13 87082127 87082427 -14790742 + AluSx SINE Alu 1 303 -9 826 176 46 0 chr13 87082494 87082647 -14790522 - FRAM SINE Alu -17 159 1 2197 118 0 0 chr13 87082968 87083281 -14789888 - AluSq SINE Alu 0 313 1 1973 138 0 30 chr13 87085375 87085680 -14787489 + AluSx SINE Alu 1 296 -16 2147 107 3 0 chr13 87086493 87086793 -14786376 + AluSx SINE Alu 1 301 -11 2332 80 0 16 chr13 87087394 87087706 -14785463 - AluSg SINE Alu -3 307 1 23 33 0 0 chr13 87088250 87088280 -14784889 + AT_rich Low_complexity Low_complexity 1 30 0 2255 61 0 46 chr13 87088344 87088670 -14784499 - AluY SINE Alu 0 311 1 1358 42 0 0 chr13 87088685 87088851 -14784318 - L1PA4 LINE L1 -1 6154 5989 338 291 99 40 chr13 87089005 87089156 -14784013 - L1MC4 LINE L1 -1334 6708 6549 2118 109 6 0 chr13 87089433 87089744 -14783425 - AluSq SINE Alu 0 313 1 195 111 0 0 chr13 87090118 87090154 -14783015 + L2 LINE L2 3026 3061 -252 798 163 23 0 chr13 87091209 87091338 -14781831 + L1MB3 LINE L1 5432 5563 -620 823 135 0 8 chr13 87091344 87091477 -14781692 + FLAM_C SINE Alu 8 139 -4 3538 151 10 7 chr13 87091479 87092063 -14781106 + L1MB3 LINE L1 5558 6143 -40 1662 172 11 3 chr13 87092084 87092369 -14780800 - AluJb SINE Alu -22 290 4 276 30 0 0 chr13 87092397 87092430 -14780739 + (T)n Simple_repeat Simple_repeat 1 33 0 1438 164 0 4 chr13 87092435 87092666 -14780503 - AluJo SINE Alu -82 230 1 715 264 88 31 chr13 87093038 87093265 -14779904 - MIR SINE MIR -1 261 22 528 301 111 18 chr13 87094639 87094865 -14778304 + MIR SINE MIR 14 260 -2 924 217 0 0 chr13 87094877 87095034 -14778135 - AluJo SINE Alu -9 293 137 1967 131 0 72 chr13 87095048 87095369 -14777800 - AluJb SINE Alu -14 298 1 1926 120 33 4 chr13 87095383 87095682 -14777487 - AluSx SINE Alu 0 307 1 809 232 99 0 chr13 87095805 87096016 -14777153 + L1MA8 LINE L1 6041 6272 -19 24 0 0 0 chr13 87096186 87096210 -14776959 + AT_rich Low_complexity Low_complexity 1 24 0 821 159 8 0 chr13 87096244 87096376 -14776793 - AluJo SINE Alu -169 133 1 2111 131 0 7 chr13 87096439 87096737 -14776432 - AluSx SINE Alu -16 296 1 2436 106 0 0 chr13 87097183 87097494 -14775675 - AluSx SINE Alu -1 311 1 937 118 7 7 chr13 87097494 87097629 -14775540 - AluJo SINE Alu -177 135 1 261 155 0 0 chr13 87098631 87098689 -14774480 + (CA)n Simple_repeat Simple_repeat 1 58 0 638 179 6 0 chr13 87098701 87098874 -14774295 + (CA)n Simple_repeat Simple_repeat 2 175 0 1222 134 10 16 chr13 87099522 87099716 -14773453 + 7SLRNA srpRNA srpRNA 106 298 -22 2560 66 3 3 chr13 87099716 87100018 -14773151 - AluSp SINE Alu -11 302 1 33 0 0 0 chr13 87100030 87100063 -14773106 + AT_rich Low_complexity Low_complexity 1 33 0 2181 105 0 10 chr13 87100131 87100426 -14772743 - AluSx SINE Alu -20 292 1 1181 177 76 16 chr13 87100457 87100824 -14772345 + L1MA9 LINE L1 5805 6290 -22 433 184 0 13 chr13 87100828 87100904 -14772265 - AluS SINE Alu -12 299 225 1382 168 0 0 chr13 87100904 87101113 -14772056 + AluJb SINE Alu 90 298 -14 1980 139 3 10 chr13 87101140 87101441 -14771728 + AluJb SINE Alu 1 299 -13 1850 123 49 85 chr13 87101490 87101879 -14771290 - THE1C LTR MaLR 0 375 1 289 268 195 16 chr13 87102180 87102202 -14770967 - MIR SINE MIR -97 165 148 2351 79 21 0 chr13 87102202 87102493 -14770676 - AluSx SINE Alu -13 299 3 289 268 195 16 chr13 87102493 87102593 -14770576 - MIR SINE MIR -114 148 21 457 316 99 19 chr13 87102972 87103131 -14770038 + MIR SINE MIR 28 210 -52 1338 184 6 130 chr13 87103131 87103485 -14769684 + AluJo SINE Alu 1 310 -2 457 316 99 19 chr13 87103485 87103537 -14769632 + MIR SINE MIR 210 256 -6 286 211 169 0 chr13 87103557 87103628 -14769541 + MER91C DNA MER1_type 15 97 -43 291 326 73 32 chr13 87103683 87103901 -14769268 + L2 LINE L2 2824 3050 -222 839 138 0 51 chr13 87104148 87104286 -14768883 + FLAM_C SINE Alu 1 131 -2 2276 77 6 45 chr13 87104675 87104987 -14768182 - AluY SINE Alu -11 300 1 206 200 0 0 chr13 87105462 87105502 -14767667 - L2 LINE L2 0 3313 3274 2178 80 29 0 chr13 87105574 87105872 -14767297 - AluSp SINE Alu 0 306 1 435 95 26 181 chr13 87105904 87106020 -14767149 - MER20 DNA MER1_type -69 150 53 1926 169 0 23 chr13 87106046 87106354 -14766815 + AluJo SINE Alu 3 303 -9 1900 163 30 25 chr13 87106354 87106715 -14766454 + L1MC1 LINE L1 5966 6328 -5 2949 158 12 43 chr13 87106835 87107359 -14765810 - L1MB3 LINE L1 0 6183 5677 1953 129 17 24 chr13 87107359 87107516 -14765653 - AluJb SINE Alu -19 293 137 1935 67 126 7 chr13 87107516 87107785 -14765384 - AluYa8 SINE Alu -9 301 1 1953 129 17 24 chr13 87107785 87107922 -14765247 - AluJb SINE Alu -175 137 1 2949 158 12 43 chr13 87107922 87107978 -14765191 - L1MB3 LINE L1 -506 5677 5621 1766 148 18 28 chr13 87108573 87108882 -14764287 - AluSx SINE Alu 0 306 1 855 261 20 102 chr13 87109075 87109253 -14763916 - L1MC4a LINE L1 -1854 5954 5763 619 129 7 168 chr13 87109253 87109408 -14763761 - FLAM_C SINE Alu -3 130 1 855 261 20 102 chr13 87109408 87109678 -14763491 - L1MC4a LINE L1 -2045 5763 5543 2535 57 0 13 chr13 87110006 87110306 -14762863 - AluY SINE Alu -14 297 2 807 186 82 16 chr13 87110404 87110587 -14762582 - MER3 DNA MER1_type 0 209 15 493 145 0 0 chr13 87110650 87110726 -14762443 + AluJ/FLAM SINE Alu 2 77 -235 2327 110 0 0 chr13 87110769 87111068 -14762101 + AluY SINE Alu 2 300 -11 2474 88 3 0 chr13 87111172 87111480 -14761689 - AluSq SINE Alu -4 309 1 22 0 0 0 chr13 87111490 87111512 -14761657 + AT_rich Low_complexity Low_complexity 1 22 0 777 273 121 74 chr13 87112306 87112482 -14760687 + L2 LINE L2 983 1149 -2165 1073 164 20 0 chr13 87112482 87112647 -14760522 + L1MB3 LINE L1 5972 6143 -40 2140 107 3 10 chr13 87112647 87112947 -14760222 + AluSx SINE Alu 1 298 -14 1073 164 20 0 chr13 87112947 87112982 -14760187 + L1MB3 LINE L1 6143 6176 -7 777 273 121 74 chr13 87112982 87113008 -14760161 + L2 LINE L2 1149 1172 -2142 2256 97 0 3 chr13 87113008 87113353 -14759816 + AluSg SINE Alu 2 345 0 777 273 121 74 chr13 87113353 87113685 -14759484 + L2 LINE L2 1172 1545 -1769 960 188 12 6 chr13 87113696 87113861 -14759308 + FRAM SINE Alu 1 166 0 702 214 41 15 chr13 87113874 87114070 -14759099 + L1MB4 LINE L1 5980 6180 0 499 302 239 43 chr13 87114076 87115223 -14757946 + L2 LINE L2 1533 2904 -410 775 169 0 114 chr13 87115228 87115299 -14757870 + MER20 DNA MER1_type 1 78 -141 1577 152 145 0 chr13 87115299 87115568 -14757601 - AluJo SINE Alu -4 308 1 775 169 0 114 chr13 87115568 87115680 -14757489 + MER20 DNA MER1_type 78 163 -56 1474 150 0 13 chr13 87115951 87116178 -14756991 + AluJb SINE Alu 88 311 -1 1932 168 9 0 chr13 87116708 87117054 -14756115 + L1MB3 LINE L1 5784 6132 -51 423 0 0 0 chr13 87118747 87118794 -14754375 + (CA)n Simple_repeat Simple_repeat 2 48 0 955 268 7 15 chr13 87118965 87119237 -14753932 + L1ME3 LINE L1 5659 5928 -234 * 2138 204 18 2 chr13 87118997 87119443 -14753726 + L1MB3 LINE L1 5687 6139 -44 2394 96 0 0 chr13 87119613 87119914 -14753255 + AluSq SINE Alu 11 311 -2 537 323 61 25 chr13 87120105 87120464 -14752705 - L1MEc LINE L1 -5918 478 107 2415 81 3 0 chr13 87120618 87120914 -14752255 + AluSp SINE Alu 1 297 -16 190 140 18 18 chr13 87120984 87121028 -14752141 + (TA)n Simple_repeat Simple_repeat 1 47 -10 2309 108 3 3 chr13 87121028 87121333 -14751836 - AluSx SINE Alu -7 305 1 190 140 18 18 chr13 87121333 87121345 -14751824 + (TA)n Simple_repeat Simple_repeat 46 57 0 314 321 33 11 chr13 87121693 87121877 -14751292 - HAL1 LINE L1 -863 1644 1457 1781 176 51 14 chr13 87121933 87122229 -14750940 - AluJo SINE Alu -5 307 1 987 44 0 0 chr13 87122450 87122563 -14750606 + AluSp SINE Alu 5 117 -196 2427 87 0 7 chr13 87122563 87122872 -14750297 + AluSc SINE Alu 1 307 -2 1467 119 5 0 chr13 87122885 87123078 -14750091 + AluSp SINE Alu 103 296 -17 2221 104 40 0 chr13 87123549 87123848 -14749321 + AluY SINE Alu 1 311 0 2302 109 3 0 chr13 87124219 87124522 -14748647 + AluSx SINE Alu 1 304 -8 2244 95 10 3 chr13 87124601 87124905 -14748264 - AluSq SINE Alu -7 306 1 484 156 0 22 chr13 87124950 87125040 -14748129 + FLAM_C SINE Alu 55 142 -1 275 269 62 92 chr13 87125072 87125142 -14748027 - L1MC4 LINE L1 -405 7637 7566 2415 94 0 0 chr13 87125142 87125439 -14747730 - AluSg SINE Alu -13 297 1 275 269 62 92 chr13 87125439 87125769 -14747400 - L1MC4 LINE L1 -476 7566 7249 782 157 8 22 chr13 87125784 87125918 -14747251 - FLAM_A SINE Alu -1 132 1 1408 161 0 0 chr13 87126054 87126271 -14746898 + MER20 DNA MER1_type 2 218 -1 1226 118 0 0 chr13 87127555 87127716 -14745453 - AluSg/x SINE Alu -15 297 137 261 269 153 78 chr13 87128013 87128321 -14744848 + L1ME3A LINE L1 3658 3988 -2158 458 280 30 61 chr13 87128347 87128461 -14744708 + L1ME3A LINE L1 5677 5793 -377 2207 96 7 0 chr13 87128461 87128777 -14744392 + AluSp SINE Alu 1 318 0 458 280 30 61 chr13 87128777 87128957 -14744212 + L1ME3A LINE L1 5793 5963 -207 399 322 69 45 chr13 87129011 87129213 -14743956 + L1ME3A LINE L1 5962 6168 -2 307 214 64 88 chr13 87129309 87129394 -14743775 - L1MD3 LINE L1 0 8042 7956 2460 86 0 0 chr13 87129394 87129696 -14743473 - AluY SINE Alu -9 302 1 307 214 64 88 chr13 87129696 87130068 -14743101 - L1MD3 LINE L1 -86 7956 7606 2479 84 3 0 chr13 87130068 87130379 -14742790 - AluSp SINE Alu -1 312 1 307 214 64 88 chr13 87130379 87130654 -14742515 - L1MD3 LINE L1 -436 7606 7326 2731 32 0 13 chr13 87130870 87131184 -14741985 - AluY SINE Alu -1 310 1 1804 58 5 9 chr13 87131192 87131415 -14741754 - AluY SINE Alu -7 304 83 1945 117 38 0 chr13 87131441 87131706 -14741463 + AluSg SINE Alu 23 297 -13 1870 157 68 31 chr13 87132159 87132484 -14740685 - MER1B DNA MER1_type 0 337 1 2174 128 3 0 chr13 87133138 87133435 -14739734 - AluSq SINE Alu -10 303 6 212 188 0 21 chr13 87136098 87136146 -14737023 + A-rich Low_complexity Low_complexity 2 48 0 23 33 0 0 chr13 87140805 87140835 -14732334 + GC_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr13 87142878 87142911 -14730258 + GC_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 87142935 87142972 -14730197 + GC_rich Low_complexity Low_complexity 1 37 0 213 338 0 0 chr13 87143012 87143080 -14730089 + G-rich Low_complexity Low_complexity 1 68 0 23 33 0 0 chr13 87143490 87143520 -14729649 + GC_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr13 87144113 87144140 -14729029 + (CCA)n Simple_repeat Simple_repeat 2 28 0 29 28 0 0 chr13 87147154 87147190 -14725979 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 87147236 87147272 -14725897 + AT_rich Low_complexity Low_complexity 1 36 0 32 0 0 0 chr13 87149641 87149673 -14723496 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr13 87151373 87151396 -14721773 + (TTG)n Simple_repeat Simple_repeat 2 24 0 186 71 0 0 chr13 87151662 87151690 -14721479 + (CAA)n Simple_repeat Simple_repeat 2 29 0 305 93 19 0 chr13 87152199 87152253 -14720916 + (CA)n Simple_repeat Simple_repeat 1 55 0 342 0 0 0 chr13 87158387 87158425 -14714744 + (TG)n Simple_repeat Simple_repeat 1 38 0 2152 121 0 16 chr13 87159982 87160296 -14712873 - AluSx SINE Alu -3 309 1 2059 115 3 7 chr13 87160566 87160852 -14712317 + AluSp SINE Alu 13 297 -16 2093 137 0 13 chr13 87161249 87161562 -14711607 - AluSc SINE Alu 0 309 1 689 143 0 0 chr13 87161740 87161845 -14711324 - AluSx SINE Alu -14 295 191 1039 108 14 0 chr13 87161846 87161985 -14711184 - AluSx SINE Alu -171 141 1 241 83 0 0 chr13 87162230 87162266 -14710903 + L1MB3 LINE L1 6138 6173 -10 2142 122 0 20 chr13 87162266 87162569 -14710600 - AluSx SINE Alu -15 297 1 1899 184 0 0 chr13 87162866 87163170 -14709999 - AluSx SINE Alu -8 304 1 324 0 0 0 chr13 87164483 87164519 -14708650 + (TG)n Simple_repeat Simple_repeat 1 36 0 1906 130 28 0 chr13 87164950 87165235 -14707934 - AluSx SINE Alu -19 293 1 235 265 0 0 chr13 87166580 87166629 -14706540 + (CACG)n Simple_repeat Simple_repeat 3 51 0 28 0 0 0 chr13 87167345 87167373 -14705796 + GC_rich Low_complexity Low_complexity 1 28 0 405 0 0 0 chr13 87168244 87168289 -14704880 + (CA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr13 87170036 87170057 -14703112 + GC_rich Low_complexity Low_complexity 1 21 0 408 273 17 6 chr13 87170749 87170925 -14702244 + T-rich Low_complexity Low_complexity 3 180 0 338 251 17 25 chr13 87170944 87171287 -14701882 + CT-rich Low_complexity Low_complexity 1 340 0 472 230 22 17 chr13 87171308 87171486 -14701683 + CT-rich Low_complexity Low_complexity 2 180 0 753 148 0 0 chr13 87171613 87171721 -14701448 - AluJb SINE Alu -203 109 2 405 0 0 0 chr13 87171740 87171785 -14701384 + (CA)n Simple_repeat Simple_repeat 1 45 0 351 197 0 0 chr13 87171788 87171849 -14701320 - AluS SINE Alu -242 61 1 246 116 0 0 chr13 87171866 87171909 -14701260 + (CA)n Simple_repeat Simple_repeat 1 43 0 1197 132 109 141 chr13 87171919 87172267 -14700902 + MER7A DNA MER2_type 11 345 -1 241 275 0 22 chr13 87172267 87172358 -14700811 + (TA)n Simple_repeat Simple_repeat 1 89 0 1929 135 0 30 chr13 87172358 87172654 -14700515 + AluJo SINE Alu 1 287 -25 231 36 0 0 chr13 87172672 87172700 -14700469 + (TG)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr13 87172701 87172726 -14700443 + (TA)n Simple_repeat Simple_repeat 2 26 0 235 219 88 58 chr13 87172738 87172875 -14700294 + L1MC4 LINE L1 7902 8042 0 26 30 0 0 chr13 87172883 87172916 -14700253 + AT_rich Low_complexity Low_complexity 1 33 0 2221 119 3 0 chr13 87173128 87173431 -14699738 - AluSp SINE Alu -9 304 1 2297 108 0 0 chr13 87173463 87173759 -14699410 - AluSx SINE Alu -16 296 1 419 95 55 5 chr13 87173855 87174055 -14699114 - AluSc SINE Alu -9 300 1 413 289 86 26 chr13 87174063 87174215 -14698954 - MIR SINE MIR -62 200 40 2585 72 0 0 chr13 87174362 87174667 -14698502 + AluSg SINE Alu 1 305 -5 22 56 0 0 chr13 87175149 87175185 -14697984 + AT_rich Low_complexity Low_complexity 1 36 0 2125 109 0 7 chr13 87175185 87175507 -14697662 + AluSx SINE Alu 1 320 0 2334 106 3 0 chr13 87175599 87175902 -14697267 - AluSq SINE Alu -9 304 1 1585 218 109 55 chr13 87175937 87176242 -14696927 - L1MC4a LINE L1 -1866 5942 5655 1390 152 92 179 chr13 87176242 87176795 -14696374 + MLT1D LTR MaLR 1 505 0 1585 218 109 55 chr13 87176795 87177097 -14696072 - L1MC4a LINE L1 -2153 5655 5295 2341 110 3 0 chr13 87177097 87177406 -14695763 - AluSx SINE Alu -2 310 1 1585 218 109 55 chr13 87177406 87177450 -14695719 - L1MC4a LINE L1 -2513 5295 5255 22 35 0 0 chr13 87177531 87177560 -14695609 + AT_rich Low_complexity Low_complexity 1 29 0 2291 114 10 0 chr13 87177707 87178015 -14695154 - AluSx SINE Alu -1 311 1 1856 160 10 13 chr13 87178224 87178524 -14694645 - AluJo SINE Alu -13 299 1 2419 83 3 0 chr13 87179051 87179352 -14693817 + AluSp SINE Alu 1 302 -11 449 328 71 29 chr13 87179388 87179626 -14693543 + L2 LINE L2 2185 2432 -882 808 143 143 0 chr13 87179688 87179821 -14693348 + FAM SINE Alu 1 49 0 2563 63 0 0 chr13 87179823 87180124 -14693045 + AluY SINE Alu 1 301 -10 2169 124 0 0 chr13 87180623 87180914 -14692255 - AluSx SINE Alu -17 295 5 25 0 0 0 chr13 87180966 87180991 -14692178 + AT_rich Low_complexity Low_complexity 1 25 0 6124 124 82 17 chr13 87181108 87182030 -14691139 - Tigger2 DNA MER2_type 0 2718 1717 2473 90 3 0 chr13 87182030 87182341 -14690828 - AluSp SINE Alu -1 312 1 6124 124 82 17 chr13 87182341 87182476 -14690693 - Tigger2 DNA MER2_type -1001 1717 1592 1872 71 4 0 chr13 87182985 87183253 -14689916 + AluY SINE Alu 63 311 0 1702 102 0 62 chr13 87183253 87183372 -14689797 - Tigger2 DNA MER2_type -1211 1507 1382 2884 3 0 0 chr13 87183372 87183676 -14689493 + AluYa5 SINE Alu 1 304 -7 1702 102 0 62 chr13 87183676 87183831 -14689338 - Tigger2 DNA MER2_type -1336 1382 1250 365 254 164 5 chr13 87183871 87184235 -14688934 - L1MC/D LINE L1 -589 5573 5150 454 328 56 34 chr13 87184331 87184599 -14688570 + MLT1J1 LTR MaLR 121 394 -52 1319 155 114 97 chr13 87184633 87184774 -14688395 + AluJo SINE Alu 1 138 -174 2032 134 3 3 chr13 87184774 87185058 -14688111 - AluSx SINE Alu -28 284 1 1319 155 114 97 chr13 87185058 87185206 -14687963 + AluJo SINE Alu 138 295 -17 2483 82 0 0 chr13 87185225 87185530 -14687639 + AluY SINE Alu 2 306 -5 1226 207 51 8 chr13 87185598 87185854 -14687315 + Tigger7 DNA MER2_type 1 267 -466 558 175 10 0 chr13 87185853 87185950 -14687219 + Tigger7 DNA MER2_type 2490 2587 0 * 476 306 130 28 chr13 87185968 87185997 -14687172 - L1MC/D LINE L1 -1034 5112 5087 2351 97 7 0 chr13 87185997 87186305 -14686864 + AluSx SINE Alu 1 310 -2 476 306 130 28 chr13 87186305 87186627 -14686542 - L1MC/D LINE L1 -1059 5087 4723 384 22 0 0 chr13 87186714 87186759 -14686410 + (CA)n Simple_repeat Simple_repeat 1 45 0 2390 93 0 0 chr13 87186825 87187125 -14686044 + AluSq SINE Alu 1 300 -13 536 183 77 0 chr13 87187258 87187362 -14685807 - AluJb SINE Alu -199 113 2 2089 114 157 19 chr13 87187415 87187791 -14685378 - MSTA LTR MaLR 0 428 1 8186 130 57 48 chr13 87187794 87188974 -14684195 - MSTA-int LTR MaLR -3 1577 378 2467 89 0 0 chr13 87188974 87189278 -14683891 - AluSq SINE Alu -9 304 1 8186 130 57 48 chr13 87189278 87189651 -14683518 - MSTA-int LTR MaLR -1202 378 10 2030 147 155 11 chr13 87189656 87190030 -14683139 - MSTA LTR MaLR 0 428 1 710 312 104 35 chr13 87190032 87190302 -14682867 - L1MC/D LINE L1 -1762 4384 4134 2552 70 0 0 chr13 87190302 87190600 -14682569 - AluY SINE Alu -13 298 1 710 312 104 35 chr13 87190600 87191089 -14682080 - L1MC/D LINE L1 -2012 4134 3573 4093 99 10 51 chr13 87191100 87191263 -14681906 + LTR43 LTR ERV1 1 169 -433 2378 95 0 10 chr13 87191263 87191569 -14681600 - AluSq SINE Alu -6 307 5 4093 99 10 51 chr13 87191569 87192033 -14681136 + LTR43 LTR ERV1 169 602 0 2007 93 31 17 chr13 87192073 87192363 -14680806 - AluY SINE Alu -17 294 1 2108 134 3 16 chr13 87192391 87192698 -14680471 + AluSx SINE Alu 1 303 -9 2004 99 60 3 chr13 87192984 87193266 -14679903 - AluSx SINE Alu -14 298 1 300 93 0 0 chr13 87193377 87193420 -14679749 - Alu SINE Alu -257 43 1 323 247 63 70 chr13 87193423 87193581 -14679588 - L1MC/D LINE L1 -2945 3201 3045 694 210 16 0 chr13 87193582 87193706 -14679463 + FLAM_A SINE Alu 1 126 -7 1084 206 50 91 chr13 87193708 87194169 -14679000 - L1M4 LINE L1 -1809 4337 3896 * 1242 238 77 47 chr13 87194154 87194213 -14678956 - L1M4 LINE L1 -2629 3517 3461 2092 175 66 32 chr13 87194213 87194652 -14678517 - MSTB2 LTR MaLR 0 457 4 1242 238 77 47 chr13 87194652 87194763 -14678406 - L1M4 LINE L1 -2685 3461 3355 832 183 0 0 chr13 87194763 87194894 -14678275 - FLAM_A SINE Alu -2 131 1 1242 238 77 47 chr13 87194894 87194995 -14678174 - L1M4 LINE L1 -2791 3355 3259 2168 76 51 60 chr13 87194995 87195311 -14677858 - AluSq SINE Alu 0 313 1 1242 238 77 47 chr13 87195311 87195468 -14677701 - L1M4 LINE L1 -2887 3259 3108 1974 117 0 3 chr13 87195468 87195774 -14677395 - AluSx SINE Alu 0 305 1 2136 104 3 3 chr13 87195784 87196091 -14677078 - AluSq SINE Alu -6 307 1 1242 238 77 47 chr13 87196091 87196347 -14676822 - L1M4 LINE L1 -3046 3100 2775 2542 14 0 0 chr13 87196347 87196688 -14676481 - AluYb8 SINE Alu 0 342 2 480 145 0 0 chr13 87196731 87196807 -14676362 - AluJ/FLAM SINE Alu -235 77 2 852 180 79 26 chr13 87196864 87197053 -14676116 + MER3 DNA MER1_type 11 209 0 1658 111 35 21 chr13 87197151 87197440 -14675729 + AluY SINE Alu 2 294 -17 4075 99 10 51 chr13 87197480 87197944 -14675225 - LTR43 LTR ERV1 0 602 169 1867 133 0 19 chr13 87197944 87198253 -14674916 + AluSq SINE Alu 5 307 -6 4075 99 10 51 chr13 87198253 87198416 -14674753 - LTR43 LTR ERV1 -433 169 1 825 303 105 37 chr13 87198427 87198916 -14674253 + L1M4 LINE L1 3573 4134 -2012 2405 70 0 0 chr13 87198916 87199214 -14673955 + AluY SINE Alu 1 298 -13 825 303 105 37 chr13 87199214 87199484 -14673685 + L1M4 LINE L1 4134 4384 -1762 2003 147 155 11 chr13 87199486 87199860 -14673309 + MSTA LTR MaLR 1 428 0 3052 133 65 19 chr13 87199865 87200238 -14672931 + MSTA-int LTR MaLR 10 415 -1236 2317 89 0 0 chr13 87200238 87200542 -14672627 + AluSq SINE Alu 1 304 -9 3052 133 65 19 chr13 87200542 87200695 -14672474 + MSTA-int LTR MaLR 415 560 -1091 328 167 83 0 chr13 87200800 87200860 -14672309 + L1MCa LINE L1 2008 2072 -4354 321 26 0 0 chr13 87205140 87205178 -14667991 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr13 87205488 87205510 -14667659 + AT_rich Low_complexity Low_complexity 1 22 0 210 176 0 0 chr13 87210187 87210238 -14662931 + (CGG)n Simple_repeat Simple_repeat 3 53 0 366 61 0 0 chr13 87210536 87210585 -14662584 + (CGG)n Simple_repeat Simple_repeat 1 49 0 34 0 0 0 chr13 87210706 87210740 -14662429 + GC_rich Low_complexity Low_complexity 1 34 0 993 252 23 0 chr13 87211057 87211315 -14661854 + L1M4 LINE L1 3760 4023 -2123 2205 95 0 0 chr13 87211315 87211611 -14661558 + AluSg SINE Alu 1 296 -14 1545 188 26 26 chr13 87211620 87211928 -14661241 + AluJb SINE Alu 1 308 -4 2257 253 89 65 chr13 87211928 87212024 -14661145 + L1MEc LINE L1 710 802 -5594 2060 132 3 0 chr13 87212024 87212328 -14660841 + AluSx SINE Alu 1 305 -7 2257 253 89 65 chr13 87212328 87212469 -14660700 + L1MEc LINE L1 802 938 -5458 2013 127 0 22 chr13 87212469 87212784 -14660385 + AluSx SINE Alu 1 308 -4 2257 253 89 65 chr13 87212784 87213235 -14659934 + L1MEc LINE L1 938 1377 -5019 1794 151 0 10 chr13 87213235 87213527 -14659642 + AluJb SINE Alu 3 291 -21 2326 69 13 25 chr13 87213527 87213844 -14659325 + AluSp SINE Alu 1 313 0 2257 253 89 65 chr13 87213844 87214642 -14658527 + L1MEc LINE L1 1376 2238 -4158 234 159 91 0 chr13 87214644 87214681 -14658488 - Alu SINE Alu -15 286 246 2164 102 23 3 chr13 87214681 87214984 -14658185 - MER1A DNA MER1_type 0 529 221 321 238 0 0 chr13 87214988 87215051 -14658118 - AluJb SINE Alu -115 187 125 344 170 50 30 chr13 87215051 87215151 -14658018 + L1MEc LINE L1 2350 2451 -3764 2163 95 0 0 chr13 87215151 87215483 -14657686 + AluSx SINE Alu 1 332 0 293 91 0 0 chr13 87215534 87215578 -14657591 + MER2 DNA MER2_type 162 205 -140 395 259 25 62 chr13 87215596 87215758 -14657411 - Charlie8 DNA MER1_type -2236 181 26 1488 167 0 37 chr13 87215987 87216316 -14656853 - AluJo SINE Alu 0 318 1 180 250 19 19 chr13 87216333 87216385 -14656784 + L2 LINE L2 3004 3055 -258 207 0 0 0 chr13 87216565 87216588 -14656581 + (T)n Simple_repeat Simple_repeat 1 23 0 761 207 134 26 chr13 87216635 87216867 -14656302 + MIR SINE MIR 4 260 -2 2020 107 0 0 chr13 87216886 87217189 -14655980 - AluSx SINE Alu 0 307 5 2356 57 0 3 chr13 87217820 87218117 -14655052 - AluY SINE Alu -15 296 1 2189 98 7 0 chr13 87218122 87218427 -14654742 - AluSp SINE Alu -6 307 1 1020 312 87 41 chr13 87218541 87218602 -14654567 - LTR67 LTR ERVL -23 534 477 1771 157 3 0 chr13 87218602 87218896 -14654273 + AluJb SINE Alu 1 295 -17 1020 312 87 41 chr13 87218896 87219341 -14653828 - LTR67 LTR ERVL -80 477 5 276 309 72 0 chr13 87219360 87219457 -14653712 + MER5C DNA MER1_type 13 116 -208 265 307 0 0 chr13 87219483 87219558 -14653611 - MER5C DNA MER1_type -244 80 6 374 224 182 36 chr13 87219584 87219678 -14653491 + MER58C DNA MER1_type 27 106 -2314 2263 84 0 0 chr13 87219678 87219977 -14653192 + AluY SINE Alu 1 299 -12 374 224 182 36 chr13 87219977 87220047 -14653122 + MER58C DNA MER1_type 106 215 0 736 119 0 0 chr13 87220137 87220238 -14652931 - AluSg/x SINE Alu -14 295 195 2686 55 9 0 chr13 87220238 87220566 -14652603 - LTR10C LTR ERV1 0 591 261 36057 93 45 37 chr13 87220566 87226938 -14646231 + Harlequin LTR ERV1 17 4971 0 802 118 196 12 chr13 87226938 87227163 -14646006 + Harlequin LTR ERV1 870 1141 -5755 6861 87 7 1 chr13 87227159 87228162 -14645007 + Harlequin LTR ERV1 504 8399 0 2114 28 16 0 chr13 87228162 87228413 -14644756 - LTR10C LTR ERV1 -328 263 9 2361 61 0 3 chr13 87228414 87228711 -14644458 - AluY SINE Alu -13 298 3 924 124 0 0 chr13 87228712 87228849 -14644320 - AluSq/x SINE Alu -176 137 1 1848 160 7 0 chr13 87228890 87229197 -14643972 - AluSx SINE Alu -3 309 1 471 274 85 6 chr13 87229217 87229381 -14643788 - MLT1J2 LTR MaLR 0 450 274 438 298 24 54 chr13 87229391 87229596 -14643573 - MLT1J2 LTR MaLR -224 222 24 2171 97 0 0 chr13 87229655 87229953 -14643216 - AluSg SINE Alu -12 298 1 1051 282 36 34 chr13 87230043 87230430 -14642739 - MLT1J LTR MaLR -33 478 91 575 255 51 6 chr13 87230464 87230621 -14642548 - MLT1J LTR MaLR -347 164 1 520 259 36 16 chr13 87230996 87231189 -14641980 + L1MC5 LINE L1 7723 7919 -42 306 296 195 18 chr13 87231218 87231387 -14641782 + MIR SINE MIR 37 235 -27 2085 86 7 13 chr13 87231397 87231698 -14641471 - AluSx SINE Alu -13 299 1 215 276 17 0 chr13 87231770 87231828 -14641341 - MIR SINE MIR -120 88 30 22 0 0 0 chr13 87233337 87233359 -14639810 + AT_rich Low_complexity Low_complexity 1 22 0 274 286 44 0 chr13 87233375 87233466 -14639703 - MIR3 SINE MIR 0 208 114 192 300 263 0 chr13 87233767 87233927 -14639242 - L2 LINE L2 -5 3308 3107 633 231 198 14 chr13 87233938 87234150 -14639019 - MIR SINE MIR -6 256 6 275 324 128 27 chr13 87234155 87234475 -14638694 - L2 LINE L2 -218 3054 2699 192 288 197 0 chr13 87234592 87234658 -14638511 + L2 LINE L2 3212 3290 -23 326 283 193 32 chr13 87235124 87235152 -14638017 - MIR SINE MIR -15 247 225 1919 101 27 17 chr13 87235152 87235449 -14637720 - AluSc SINE Alu -5 304 5 326 283 193 32 chr13 87235449 87235607 -14637562 - MIR SINE MIR -37 225 31 1496 161 0 39 chr13 87235609 87235888 -14637281 - AluJo SINE Alu -1 311 44 185 385 33 0 chr13 87236732 87236823 -14636346 - L2 LINE L2 -5 3308 3215 1558 147 41 48 chr13 87236869 87237002 -14636167 + AluJb SINE Alu 1 133 -179 216 0 0 0 chr13 87237002 87237026 -14636143 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1558 147 41 48 chr13 87237026 87237184 -14635985 + AluJb SINE Alu 133 290 -22 2339 91 3 0 chr13 87237186 87237495 -14635674 + AluSp SINE Alu 3 312 -1 1245 199 5 95 chr13 87237495 87237867 -14635302 + L1MC4 LINE L1 7545 7904 -91 2341 83 0 0 chr13 87237867 87238169 -14635000 + AluY SINE Alu 1 302 -9 1245 199 5 95 chr13 87238169 87238254 -14634915 + L1MC4 LINE L1 7904 7995 0 241 320 90 34 chr13 87238374 87238552 -14634617 - L1ME3A LINE L1 -21 6149 5962 513 283 30 60 chr13 87238606 87238786 -14634383 - L1ME3A LINE L1 -207 5963 5793 2070 96 7 0 chr13 87238786 87239102 -14634067 - AluSp SINE Alu 0 318 1 513 283 30 60 chr13 87239102 87239220 -14633949 - L1ME3A LINE L1 -377 5793 5673 298 263 153 78 chr13 87239242 87239550 -14633619 - L1ME3A LINE L1 -2158 3988 3658 1146 118 0 0 chr13 87239847 87240008 -14633161 + AluSg/x SINE Alu 135 295 -15 1389 161 0 0 chr13 87241292 87241509 -14631660 - MER20 DNA MER1_type -1 218 2 226 143 0 0 chr13 87241513 87241548 -14631621 - MER20 DNA MER1_type -183 36 2 761 157 8 22 chr13 87241645 87241779 -14631390 + FLAM_A SINE Alu 1 132 -1 336 269 62 92 chr13 87241794 87242124 -14631045 + L1MC4 LINE L1 7249 7566 -476 2267 94 0 0 chr13 87242124 87242421 -14630748 + AluSg SINE Alu 1 297 -13 336 269 62 92 chr13 87242421 87242491 -14630678 + L1MC4 LINE L1 7566 7637 -405 478 156 0 22 chr13 87242523 87242613 -14630556 - FLAM_C SINE Alu -1 142 55 2038 102 10 0 chr13 87242658 87242951 -14630218 + AluSq SINE Alu 1 296 -17 1037 131 6 6 chr13 87243046 87243206 -14629963 + AluSg SINE Alu 1 160 -150 345 89 19 16 chr13 87243308 87243374 -14629795 - FLAM_C SINE Alu -82 50 1 2081 119 0 7 chr13 87243426 87243728 -14629441 + AluSx SINE Alu 1 300 -12 266 85 0 0 chr13 87243733 87243780 -14629389 - L1MB3 LINE L1 0 6183 6137 845 166 0 26 chr13 87243782 87243933 -14629236 - L1M3 LINE L1 -538 5642 5496 1707 185 7 0 chr13 87243933 87244230 -14628939 - AluJb SINE Alu -13 299 1 380 174 50 116 chr13 87244231 87244293 -14628876 - MER106B DNA MER1_type -50 1009 957 2142 107 3 3 chr13 87244293 87244601 -14628568 - AluSp SINE Alu -5 308 1 380 174 50 116 chr13 87244601 87244659 -14628510 - MER106B DNA MER1_type -102 957 897 2082 130 0 3 chr13 87244685 87244992 -14628177 + AluSx SINE Alu 1 306 -6 2152 107 0 22 chr13 87245200 87245517 -14627652 - AluSx SINE Alu -2 310 1 2594 127 65 2 chr13 87245636 87246039 -14627130 - MSTA LTR MaLR 0 428 1 2006 112 21 0 chr13 87246333 87246620 -14626549 + AluSq SINE Alu 1 293 -20 541 182 10 10 chr13 87246808 87246907 -14626262 - MER4D LTR ERV1 -1 902 804 245 180 0 0 chr13 87246908 87246958 -14626211 + LTR28 LTR ERV1 1 50 -970 * 2118 132 56 70 chr13 87246938 87246986 -14626183 + MER61C LTR ERV1 15 62 -372 1742 141 20 10 chr13 87246986 87247291 -14625878 - AluJb SINE Alu -1 311 4 2118 132 56 70 chr13 87247291 87247668 -14625501 + MER61C LTR ERV1 62 434 0 4629 135 20 55 chr13 87247668 87248503 -14624666 - MER4D LTR ERV1 -97 806 1 2162 70 7 11 chr13 87248854 87249164 -14624005 + AluSp SINE Alu 1 309 0 1852 160 3 0 chr13 87249187 87249493 -14623676 + AluJb SINE Alu 1 307 -5 1142 220 46 49 chr13 87249695 87249873 -14623296 - L1ME3A LINE L1 -14 6156 5978 2129 123 0 0 chr13 87249873 87250173 -14622996 - AluSq SINE Alu -13 300 1 1142 220 46 49 chr13 87250173 87250321 -14622848 - L1ME3A LINE L1 -192 5978 5831 877 186 18 32 chr13 87250335 87250556 -14622613 - L1MC5 LINE L1 -48 7913 7696 21 0 0 0 chr13 87250658 87250679 -14622490 + AT_rich Low_complexity Low_complexity 1 21 0 835 157 84 24 chr13 87250837 87251003 -14622166 - AluSp SINE Alu -12 301 126 1644 142 75 0 chr13 87251031 87251298 -14621871 + AluSx SINE Alu 6 292 -20 2207 101 0 10 chr13 87251339 87251646 -14621523 + AluSx SINE Alu 1 304 -8 994 83 0 0 chr13 87251734 87251866 -14621303 + AluSg SINE Alu 3 134 -176 2128 103 0 7 chr13 87251866 87252166 -14621003 + AluSq SINE Alu 1 298 -15 2515 58 0 0 chr13 87252168 87252478 -14620691 + AluY SINE Alu 1 310 -1 1309 192 23 26 chr13 87252494 87252651 -14620518 - MER34 LTR ERV1 -277 265 108 2127 101 0 29 chr13 87252651 87252958 -14620211 + AluSx SINE Alu 1 298 -14 1309 192 23 26 chr13 87252958 87253066 -14620103 - MER34 LTR ERV1 -434 108 1 328 250 0 0 chr13 87253066 87253138 -14620031 - L1MC4a LINE L1 -1120 6688 6617 2246 91 0 3 chr13 87253221 87253530 -14619639 + AluSp SINE Alu 6 313 0 236 171 0 0 chr13 87253650 87253691 -14619478 + MLT1I LTR MaLR 103 143 -266 228 292 22 11 chr13 87253897 87253986 -14619183 + MLT1H LTR MaLR 444 533 -16 578 296 131 48 chr13 87254058 87254456 -14618713 - L1MC4a LINE L1 -1334 6474 6044 1561 209 40 69 chr13 87254498 87254578 -14618591 - MER74B LTR ERVL 0 622 541 1522 101 27 0 chr13 87254578 87254797 -14618372 - AluSc SINE Alu -19 290 66 * 2220 103 0 0 chr13 87254796 87255098 -14618071 - AluY SINE Alu -8 303 2 1561 209 40 69 chr13 87255098 87255466 -14617703 - MER74B LTR ERVL -382 240 187 1537 137 79 4 chr13 87255471 87255749 -14617420 + AluSq SINE Alu 2 300 -13 265 98 24 0 chr13 87255749 87255790 -14617379 + (GA)n Simple_repeat Simple_repeat 1 42 0 373 116 29 0 chr13 87255792 87255861 -14617308 + GA-rich Low_complexity Low_complexity 3 73 0 722 149 0 16 chr13 87255865 87255986 -14617183 - MER74B LTR ERVL -442 180 62 758 227 78 7 chr13 87255990 87256144 -14617025 + MER21B LTR ERV1 330 494 -369 1999 99 42 0 chr13 87256186 87256469 -14616700 + AluSq SINE Alu 1 295 -18 297 130 58 0 chr13 87256758 87256827 -14616342 + CT-rich Low_complexity Low_complexity 4 76 0 408 237 17 34 chr13 87256828 87256946 -14616223 - FAM SINE Alu 0 185 70 310 262 41 69 chr13 87256982 87257127 -14616042 - L1MC4a LINE L1 -1987 5821 5681 6263 133 16 19 chr13 87257198 87257587 -14615582 - L1PB1 LINE L1 -1 6150 5761 2100 117 0 3 chr13 87257587 87257887 -14615282 - AluSp SINE Alu -14 299 1 6263 133 16 19 chr13 87257887 87259087 -14614082 - L1PB1 LINE L1 -390 5761 4569 592 233 23 29 chr13 87260484 87260656 -14612513 - L1MC4a LINE L1 -1854 5954 5784 396 125 0 0 chr13 87261363 87261419 -14611750 + AluJ/FLAM SINE Alu 2 57 -245 449 326 53 21 chr13 87261515 87261892 -14611277 + L1MC4a LINE L1 4423 4811 -1335 2082 120 7 0 chr13 87261962 87262263 -14610906 - AluSx SINE Alu -9 303 1 995 141 0 12 chr13 87262326 87262489 -14610680 + AluSp SINE Alu 133 293 -20 315 320 46 34 chr13 87262491 87262666 -14610503 + L1MC4a LINE L1 4975 5151 -995 246 246 0 0 chr13 87262667 87262728 -14610441 + (TA)n Simple_repeat Simple_repeat 1 61 0 1886 102 4 0 chr13 87262746 87263002 -14610167 - AluSq SINE Alu -56 257 1 306 278 35 9 chr13 87263013 87263128 -14610041 + L1MC4a LINE L1 5160 5277 -869 1637 154 46 34 chr13 87263133 87263484 -14609685 + L1MB7 LINE L1 5814 6168 -16 2047 98 11 0 chr13 87263484 87263769 -14609400 + AluSg SINE Alu 3 290 -20 306 288 0 12 chr13 87263775 87263855 -14609314 + L1MC4 LINE L1 6641 6719 -1323 1911 129 24 0 chr13 87263881 87264175 -14608994 + AluSq SINE Alu 1 301 -12 360 262 8 16 chr13 87264187 87264313 -14608856 + L1MC4a LINE L1 5304 5428 -2380 986 103 0 83 chr13 87264379 87264433 -14608736 - Tigger3(Golem) DNA MER2_type 0 3029 2972 2105 103 0 13 chr13 87264433 87264734 -14608435 + AluSx SINE Alu 1 297 -15 986 103 0 83 chr13 87264734 87264835 -14608334 - Tigger3(Golem) DNA MER2_type -57 2972 2887 309 211 18 0 chr13 87264833 87264890 -14608279 - Tigger3(Golem) DNA MER2_type -2971 58 1 * 1363 149 41 4 chr13 87264890 87265132 -14608037 - MER2 DNA MER2_type -62 283 33 394 268 80 84 chr13 87265175 87265425 -14607744 + LTR40a LTR ERVL 1 287 -213 261 98 0 24 chr13 87265423 87265464 -14607705 + LTR40a LTR ERVL 476 515 -4 * 1197 229 20 70 chr13 87265465 87265810 -14607359 + L1MC4a LINE L1 5463 5790 -2018 413 241 103 67 chr13 87265891 87266144 -14607025 + L1MC4a LINE L1 6050 6311 -1497 336 298 0 0 chr13 87266253 87266337 -14606832 + MER63 DNA MER1_type 977 1060 0 918 257 37 85 chr13 87266396 87266680 -14606489 - MER110-int LTR ERV1 -1541 3106 2810 1467 176 33 26 chr13 87266680 87266982 -14606187 + AluJo SINE Alu 1 304 -8 918 257 37 85 chr13 87266982 87267128 -14606041 - MER110-int LTR ERV1 -1837 2810 2699 1217 191 0 118 chr13 87267128 87267468 -14605701 - AluJo SINE Alu -2 300 1 918 257 37 85 chr13 87267468 87267519 -14605650 - MER110-int LTR ERV1 -1948 2699 2647 1496 140 23 8 chr13 87267541 87267806 -14605363 + L1MB3 LINE L1 5908 6176 -7 484 205 0 0 chr13 87267949 87268032 -14605137 + AluJ/FLAM SINE Alu 2 84 -228 288 77 0 0 chr13 87268242 87268281 -14604888 + (TG)n Simple_repeat Simple_repeat 1 39 0 2273 98 3 0 chr13 87268371 87268678 -14604491 + AluSq SINE Alu 1 308 -5 2262 64 3 0 chr13 87268706 87269037 -14604132 + AluSx SINE Alu 1 332 0 293 91 0 0 chr13 87269088 87269132 -14604037 + MER2 DNA MER2_type 162 205 -140 349 272 25 62 chr13 87269150 87269312 -14603857 - Charlie8 DNA MER1_type -2236 181 26 1472 170 0 37 chr13 87269541 87269870 -14603299 - AluJo SINE Alu 0 318 1 180 250 19 19 chr13 87269887 87269939 -14603230 + L2 LINE L2 3004 3055 -258 207 0 0 0 chr13 87270119 87270142 -14603027 + (T)n Simple_repeat Simple_repeat 1 23 0 761 207 134 26 chr13 87270189 87270421 -14602748 + MIR SINE MIR 4 260 -2 2258 92 0 0 chr13 87270440 87270745 -14602424 - AluSx SINE Alu -3 309 5 2356 57 0 3 chr13 87271376 87271673 -14601496 - AluY SINE Alu -15 296 1 2189 98 7 0 chr13 87271678 87271983 -14601186 - AluSp SINE Alu -6 307 1 1020 312 87 41 chr13 87272097 87272158 -14601011 - LTR67 LTR ERVL -23 534 477 1771 157 3 0 chr13 87272158 87272452 -14600717 + AluJb SINE Alu 1 295 -17 1020 312 87 41 chr13 87272452 87272897 -14600272 - LTR67 LTR ERVL -80 477 5 276 309 72 0 chr13 87272916 87273013 -14600156 + MER5C DNA MER1_type 13 116 -208 265 307 0 0 chr13 87273039 87273114 -14600055 - MER5C DNA MER1_type -244 80 6 374 224 182 36 chr13 87273140 87273234 -14599935 + MER58C DNA MER1_type 27 106 -2314 2263 84 0 0 chr13 87273234 87273533 -14599636 + AluY SINE Alu 1 299 -12 374 224 182 36 chr13 87273533 87273603 -14599566 + MER58C DNA MER1_type 106 215 0 736 119 0 0 chr13 87273693 87273794 -14599375 - AluSg/x SINE Alu -14 298 198 2686 55 9 0 chr13 87273794 87274122 -14599047 - LTR10C LTR ERV1 0 591 261 36057 93 45 37 chr13 87274122 87280494 -14592675 + Harlequin LTR ERV1 17 4971 0 802 118 196 12 chr13 87280494 87280719 -14592450 + Harlequin LTR ERV1 870 1141 -5755 6861 87 7 1 chr13 87280715 87281718 -14591451 + Harlequin LTR ERV1 504 8399 0 2114 28 16 0 chr13 87281718 87281969 -14591200 - LTR10C LTR ERV1 -328 263 9 2361 61 0 3 chr13 87281970 87282267 -14590902 - AluY SINE Alu -13 298 3 924 124 0 0 chr13 87282268 87282405 -14590764 - AluSq/x SINE Alu -175 137 1 1848 160 7 0 chr13 87282446 87282753 -14590416 - AluSx SINE Alu -3 309 1 471 274 85 6 chr13 87282773 87282937 -14590232 - MLT1J2 LTR MaLR 0 450 274 438 298 24 54 chr13 87282947 87283152 -14590017 - MLT1J2 LTR MaLR -224 222 24 2171 97 0 0 chr13 87283211 87283509 -14589660 - AluSg SINE Alu -12 298 1 1051 282 36 34 chr13 87283599 87283986 -14589183 - MLT1J LTR MaLR -33 478 91 575 255 51 6 chr13 87284020 87284177 -14588992 - MLT1J LTR MaLR -347 164 1 520 259 36 16 chr13 87284552 87284745 -14588424 + L1MC5 LINE L1 7723 7919 -42 306 296 195 18 chr13 87284774 87284943 -14588226 + MIR SINE MIR 37 235 -27 2097 83 7 13 chr13 87284953 87285254 -14587915 - AluSx SINE Alu -13 299 1 215 276 17 0 chr13 87285326 87285384 -14587785 - MIR SINE MIR -120 88 30 385 249 128 81 chr13 87287019 87287067 -14586102 + L1MC4a LINE L1 5901 5945 -1863 2161 113 3 0 chr13 87287067 87287369 -14585800 + AluSq SINE Alu 1 303 -10 385 249 128 81 chr13 87287369 87287593 -14585576 + L1MC4a LINE L1 5945 6186 -1622 1250 229 0 30 chr13 87288023 87288320 -14584849 + MER1B DNA MER1_type 1 288 -51 344 50 0 0 chr13 87288462 87288531 -14584638 + Alu SINE Alu 243 311 0 314 262 49 77 chr13 87288611 87288753 -14584416 - L1M4 LINE L1 -3478 2668 2531 1992 120 10 0 chr13 87288753 87289045 -14584124 + AluSx SINE Alu 1 295 -17 314 262 49 77 chr13 87289045 87289085 -14584084 - L1M4 LINE L1 -3615 2531 2491 2382 74 0 0 chr13 87289579 87289890 -14583279 + AluY SINE Alu 1 311 0 208 167 26 39 chr13 87290212 87290290 -14582879 + (CCCA)n Simple_repeat Simple_repeat 3 79 0 223 96 39 0 chr13 87290308 87290360 -14582809 + (CCCA)n Simple_repeat Simple_repeat 1 54 0 184 318 197 0 chr13 87290484 87290550 -14582619 + L2 LINE L2 3171 3249 -23 326 283 193 32 chr13 87291016 87291044 -14582125 - MIR SINE MIR -15 247 225 1919 101 27 17 chr13 87291044 87291341 -14581828 - AluSc SINE Alu -5 304 5 326 283 193 32 chr13 87291341 87291499 -14581670 - MIR SINE MIR -37 225 31 1496 161 0 39 chr13 87291501 87291780 -14581389 - AluJo SINE Alu -1 311 44 185 385 33 0 chr13 87292624 87292715 -14580454 - L2 LINE L2 -5 3308 3215 1558 147 41 48 chr13 87292761 87292894 -14580275 + AluJb SINE Alu 1 133 -179 216 0 0 0 chr13 87292894 87292918 -14580251 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1558 147 41 48 chr13 87292918 87293076 -14580093 + AluJb SINE Alu 133 290 -22 2401 73 3 0 chr13 87293078 87293380 -14579789 + AluSp SINE Alu 3 305 -8 2033 115 10 0 chr13 87293722 87294017 -14579152 - AluSx SINE Alu -14 298 1 741 290 113 46 chr13 87294028 87294047 -14579122 - L2 LINE L2 -2 3311 3295 1096 204 206 53 chr13 87294047 87294479 -14578690 - MLT1D LTR MaLR -4 501 4 741 290 113 46 chr13 87294479 87295219 -14577950 - L2 LINE L2 -18 3295 2494 4807 127 77 19 chr13 87295228 87296033 -14577136 + Tigger1 DNA MER2_type 1 852 -1566 808 96 0 0 chr13 87296036 87296140 -14577029 + AluSc SINE Alu 1 104 -205 237 88 0 0 chr13 87296140 87296174 -14576995 + Tigger1 DNA MER2_type 2189 2222 -196 1405 158 18 21 chr13 87296271 87296550 -14576619 + L1MB7 LINE L1 5888 6165 -19 2264 89 7 0 chr13 87296569 87296867 -14576302 + AluSx SINE Alu 3 296 -16 1579 156 0 46 chr13 87296901 87297164 -14576005 + AluJo SINE Alu 43 293 -19 985 188 0 11 chr13 87297174 87297350 -14575819 + FAM SINE Alu 1 174 -1 537 145 119 31 chr13 87297358 87297517 -14575652 - Charlie5 DNA MER1_type -74 2538 2366 286 282 92 15 chr13 87297543 87297749 -14575420 - LTR16A1 LTR ERVL -183 274 53 2484 76 0 0 chr13 87298445 87298746 -14574423 - AluY SINE Alu -10 301 1 564 215 174 55 chr13 87298879 87299098 -14574071 - MIR SINE MIR -15 247 3 332 233 137 58 chr13 87299190 87299392 -14573777 - MIR SINE MIR -46 216 6 2274 78 3 50 chr13 87299911 87300232 -14572937 - AluSp SINE Alu -7 306 1 196 280 100 10 chr13 87300466 87300566 -14572603 + MIR SINE MIR 84 192 -70 183 42 0 0 chr13 87300719 87300743 -14572426 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1932 118 20 27 chr13 87300743 87301032 -14572137 - AluSp SINE Alu -24 289 1 194 164 18 0 chr13 87301216 87301271 -14571898 + CT-rich Low_complexity Low_complexity 1 56 0 846 199 12 0 chr13 87301272 87301433 -14571736 - FRAM SINE Alu -3 163 1 2194 114 0 7 chr13 87302445 87302743 -14570426 - AluSx SINE Alu -16 296 1 2205 92 0 0 chr13 87302755 87303065 -14570104 - AluSx SINE Alu 0 310 1 1630 164 95 17 chr13 87303458 87303806 -14569363 + THE1C LTR MaLR 1 375 0 2319 112 3 0 chr13 87303827 87304132 -14569037 - AluSx SINE Alu -6 306 1 1027 186 108 8 chr13 87304132 87304390 -14568779 - MER33 DNA MER1_type -40 284 1 1698 149 27 76 chr13 87304676 87305004 -14568165 + AluJo SINE Alu 1 312 0 2298 99 0 13 chr13 87305541 87305844 -14567325 - AluSx SINE Alu -13 299 1 270 285 57 89 chr13 87306415 87306536 -14566633 + L3 LINE CR1 864 980 -597 651 215 8 0 chr13 87306536 87306666 -14566503 + FLAM_C SINE Alu 1 131 -2 270 285 57 89 chr13 87306666 87306702 -14566467 + L3 LINE CR1 980 1016 -561 437 306 0 42 chr13 87306751 87306895 -14566274 + MIR SINE MIR 42 179 -83 320 342 59 35 chr13 87307520 87307722 -14565447 + L2 LINE L2 2746 2952 -362 603 322 49 25 chr13 87308261 87308506 -14564663 - MIR SINE MIR -4 258 8 2129 98 3 7 chr13 87308979 87309285 -14563884 + AluSx SINE Alu 1 305 0 312 331 60 33 chr13 87309481 87309632 -14563537 - MIR3 SINE MIR -14 194 40 1877 78 9 137 chr13 87309925 87310144 -14563025 - AluSg SINE Alu 0 310 147 1927 114 3 67 chr13 87310144 87310459 -14562710 - AluSc SINE Alu -14 295 1 1877 78 9 137 chr13 87310459 87310588 -14562581 - AluSg SINE Alu -163 147 3 2217 107 7 0 chr13 87311706 87312005 -14561164 - AluSq SINE Alu -12 301 1 3995 115 36 40 chr13 87312182 87312706 -14560463 - Tigger3(Golem) DNA MER2_type -8 3020 2498 2334 103 0 0 chr13 87312706 87313006 -14560163 - AluSx SINE Alu -10 302 3 3995 115 36 40 chr13 87313006 87313221 -14559948 - Tigger3(Golem) DNA MER2_type -530 2498 2284 6003 120 29 27 chr13 87313234 87313425 -14559744 + L1MA3 LINE L1 5139 5328 -977 1676 133 22 82 chr13 87313425 87313741 -14559428 + AluSx SINE Alu 1 297 -15 6003 120 29 27 chr13 87313741 87314706 -14558463 + L1MA3 LINE L1 5328 6305 0 341 235 112 10 chr13 87314707 87314805 -14558364 - Tigger3(Golem) DNA MER2_type -2921 108 1 291 193 84 0 chr13 87315654 87315737 -14557432 - L1M4 LINE L1 -1431 4715 4626 476 232 8 8 chr13 87315748 87315873 -14557296 - L1ME LINE L1 -431 5733 5609 576 189 108 104 chr13 87315874 87315980 -14557189 - MER58C DNA MER1_type -2206 214 110 216 0 0 0 chr13 87315980 87316004 -14557165 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 576 189 108 104 chr13 87316004 87316109 -14557060 - MER58C DNA MER1_type -2310 110 2 867 221 22 25 chr13 87316121 87316397 -14556772 - L1ME LINE L1 -555 5609 5335 350 123 31 154 chr13 87316473 87316603 -14556566 - L1MC4 LINE L1 -60 7982 7869 2366 64 0 0 chr13 87316603 87316900 -14556269 + L1PA6 LINE L1 5843 6139 -15 2595 64 0 0 chr13 87316964 87317275 -14555894 + AluY SINE Alu 1 311 0 746 275 102 41 chr13 87317275 87317674 -14555495 - L1MC4 LINE L1 -165 7877 7421 2055 143 3 0 chr13 87317674 87317974 -14555195 - AluJb SINE Alu -7 305 5 746 275 102 41 chr13 87317974 87318228 -14554941 - L1MC4 LINE L1 -621 7421 7184 364 312 84 74 chr13 87318423 87318936 -14554233 - L1MEd LINE L1 -5372 747 230 2011 109 33 0 chr13 87318990 87319292 -14553877 - AluSq SINE Alu 0 311 1 1100 163 0 0 chr13 87319307 87319473 -14553696 - FRAM SINE Alu -11 165 1 310 222 56 0 chr13 87319500 87319608 -14553561 - L1MEd LINE L1 -5992 127 14 3751 212 107 19 chr13 87319971 87320283 -14552886 - L1ME LINE L1 -1532 4614 4331 2164 105 13 10 chr13 87320283 87320587 -14552582 - AluSx SINE Alu -5 307 3 2239 124 0 3 chr13 87320596 87320903 -14552266 - AluSg SINE Alu -4 306 1 3751 212 107 19 chr13 87320903 87321829 -14551340 - L1ME LINE L1 -1822 4324 3256 936 188 18 36 chr13 87321835 87322058 -14551111 - MLT1A1 LTR MaLR 0 365 147 2062 121 7 0 chr13 87322195 87322484 -14550685 - AluSx SINE Alu -21 291 1 243 0 0 0 chr13 87324265 87324292 -14548877 + (TG)n Simple_repeat Simple_repeat 2 28 0 2509 62 0 0 chr13 87326740 87327044 -14546125 + AluY SINE Alu 1 304 -7 264 317 55 55 chr13 87327231 87327376 -14545793 - MIR SINE MIR -109 153 9 359 296 253 7 chr13 87327459 87327756 -14545413 - L2 LINE L2 -20 3293 2924 * 403 340 154 12 chr13 87327754 87328240 -14544929 + L2 LINE L2 1840 2394 -920 210 235 0 20 chr13 87328582 87328633 -14544536 + CT-rich Low_complexity Low_complexity 5 54 0 353 37 0 19 chr13 87330087 87330141 -14543028 - L1MB3 LINE L1 -2 6181 6129 404 264 76 59 chr13 87330165 87330605 -14542564 - MER101 LTR ERV1 -29 445 24 354 97 0 69 chr13 87330621 87330693 -14542476 - L1MB3 LINE L1 -35 6148 6082 471 346 65 55 chr13 87330871 87331163 -14542006 - L2 LINE L2 -9 3263 2969 23 0 0 0 chr13 87331278 87331301 -14541868 + AT_rich Low_complexity Low_complexity 1 23 0 2393 218 112 28 chr13 87331349 87331910 -14541259 - L1MD2 LINE L1 -245 6508 5995 2097 114 0 24 chr13 87331910 87332208 -14540961 - AluSg SINE Alu -19 291 1 2393 218 112 28 chr13 87332208 87332774 -14540395 - L1MD2 LINE L1 -758 5995 5288 1911 156 62 32 chr13 87332781 87333317 -14539852 + MLT2A2 LTR ERVL 1 554 0 5433 231 99 46 chr13 87333317 87333705 -14539464 - L1MD2 LINE L1 -1266 5274 4908 1530 164 76 4 chr13 87333705 87333967 -14539202 - AluJo SINE Alu -31 281 1 5433 231 99 46 chr13 87333967 87334039 -14539130 - L1MD2 LINE L1 -1632 4908 4841 713 204 0 8 chr13 87334039 87334171 -14538998 - FLAM_A SINE Alu -2 131 1 5433 231 99 46 chr13 87334171 87334241 -14538928 - L1MD2 LINE L1 -1699 4841 4776 1745 144 14 21 chr13 87334241 87334532 -14538637 + AluJo SINE Alu 1 289 -23 5433 231 99 46 chr13 87334532 87335314 -14537855 - L1MD2 LINE L1 -1764 4776 4036 2478 76 3 0 chr13 87335314 87335615 -14537554 - AluSp SINE Alu -11 302 1 5433 231 99 46 chr13 87335615 87336935 -14536234 - L1MD2 LINE L1 -2504 4036 2787 1667 163 78 0 chr13 87336935 87337218 -14535951 - AluJo SINE Alu -7 305 1 5433 231 99 46 chr13 87337218 87337783 -14535386 - L1MD2 LINE L1 -3753 2787 2253 2180 125 0 6 chr13 87337783 87338095 -14535074 + AluSg SINE Alu 1 310 0 5433 231 99 46 chr13 87338095 87338940 -14534229 - L1MD2 LINE L1 -4287 2253 1026 265 277 34 25 chr13 87339784 87339903 -14533266 - L1MD2 LINE L1 -5935 595 476 2113 117 0 7 chr13 87340515 87340843 -14532326 - AluSx SINE Alu 0 326 1 2347 100 3 0 chr13 87341603 87341904 -14531265 - AluSx SINE Alu -10 302 1 2220 123 0 16 chr13 87342378 87342694 -14530475 + AluSx SINE Alu 1 311 -1 1816 152 6 40 chr13 87342871 87343194 -14529975 - AluJo SINE Alu 0 312 1 855 229 9 14 chr13 87344370 87344580 -14528589 - MER20 DNA MER1_type -6 213 5 2138 113 3 0 chr13 87344716 87345007 -14528162 + AluY SINE Alu 5 296 -15 1980 144 0 13 chr13 87345067 87345365 -14527804 - AluSx SINE Alu -12 300 7 855 229 9 14 chr13 87345624 87345834 -14527335 - MER20 DNA MER1_type -6 213 5 2376 86 0 0 chr13 87345970 87346261 -14526908 + AluSg SINE Alu 5 295 -15 258 274 85 33 chr13 87346273 87346426 -14526743 + L1MC/D LINE L1 5355 5515 -606 338 178 77 32 chr13 87346577 87346683 -14526486 + L1MC/D LINE L1 5727 5835 -297 675 194 0 8 chr13 87347625 87347754 -14525415 - FLAM_A SINE Alu -5 128 1 557 172 0 0 chr13 87347764 87347857 -14525312 - AluJb SINE Alu -11 301 209 1320 126 14 5 chr13 87348955 87349177 -14523992 - L1MB3 LINE L1 0 6183 5960 1966 94 11 22 chr13 87349727 87350003 -14523166 - AluSg SINE Alu -37 273 1 252 181 28 14 chr13 87350038 87350110 -14523059 + T-rich Low_complexity Low_complexity 4 76 0 21 36 0 0 chr13 87350809 87350837 -14522332 + AT_rich Low_complexity Low_complexity 1 28 0 2193 67 14 7 chr13 87350981 87351308 -14521861 + AluSp SINE Alu 1 329 0 2592 58 0 0 chr13 87352108 87352417 -14520752 - AluY SINE Alu -2 309 1 21 0 0 0 chr13 87355140 87355161 -14518008 + AT_rich Low_complexity Low_complexity 1 21 0 2260 109 3 3 chr13 87355735 87356039 -14517130 - AluSq SINE Alu -9 304 1 1732 167 45 9 chr13 87357635 87357971 -14515198 - MER7A DNA MER2_type 0 346 1 1207 207 5 0 chr13 87358370 87358592 -14514577 + MER58A DNA MER1_type 2 224 0 37 0 0 0 chr13 87358680 87358717 -14514452 + AT_rich Low_complexity Low_complexity 1 37 0 2358 102 7 0 chr13 87358756 87359060 -14514109 - AluSg1 SINE Alu -3 306 1 2247 116 0 0 chr13 87359892 87360193 -14512976 + AluSx SINE Alu 1 301 -11 314 349 0 66 chr13 87360907 87361059 -14512110 + L1MC/D LINE L1 5532 5673 -2135 366 100 0 0 chr13 87361740 87361800 -14511369 + (TG)n Simple_repeat Simple_repeat 1 60 0 387 282 28 35 chr13 87361957 87362099 -14511070 - MIR SINE MIR -67 195 55 22 0 0 0 chr13 87362521 87362543 -14510626 + AT_rich Low_complexity Low_complexity 1 22 0 352 241 38 0 chr13 87362977 87363056 -14510113 + MIR SINE MIR 30 111 -151 477 256 71 91 chr13 87363081 87363258 -14509911 - L1MEc LINE L1 -3834 2381 2202 636 195 0 0 chr13 87363258 87363386 -14509783 - L1MB7 LINE L1 0 6184 6057 477 256 71 91 chr13 87363386 87363779 -14509390 - L1MEc LINE L1 -4013 2202 1864 2008 180 29 22 chr13 87363816 87364267 -14508902 - MER65C LTR ERV1 -7 454 1 3266 148 54 3 chr13 87364351 87364958 -14508211 - L1MB4 LINE L1 -1 6179 5542 741 201 90 0 chr13 87365422 87365566 -14507603 + FRAM SINE Alu 1 157 -19 400 252 63 14 chr13 87365631 87365698 -14507471 - L1MA10 LINE L1 -11 6323 6257 1953 202 86 68 chr13 87365698 87365981 -14507188 - L1ME1 LINE L1 -76 6090 5814 1817 135 60 4 chr13 87365981 87366270 -14506899 - AluSx SINE Alu 0 304 1 1953 202 86 68 chr13 87366270 87366938 -14506231 - L1ME1 LINE L1 -352 5814 5106 1752 175 3 3 chr13 87366938 87367224 -14505945 + AluJb SINE Alu 1 286 -26 1953 202 86 68 chr13 87367224 87367497 -14505672 - L1ME1 LINE L1 -1060 5106 4840 804 103 0 0 chr13 87367497 87367604 -14505565 - AluY SINE Alu -71 240 134 478 278 24 30 chr13 87367972 87368141 -14505028 + L1ME LINE L1 37 204 -5866 233 254 34 0 chr13 87368174 87368233 -14504936 + L1ME LINE L1 419 479 -5591 2288 76 10 0 chr13 87368831 87369119 -14504050 + AluSx SINE Alu 1 291 -21 1316 128 0 0 chr13 87369258 87369445 -14503724 - AluSg/x SINE Alu 0 312 126 2227 114 3 0 chr13 87369445 87369742 -14503427 - AluSq SINE Alu -15 298 1 1095 189 201 36 chr13 87370662 87371079 -14502090 + Charlie1b DNA MER1_type 5 490 -33 196 261 45 68 chr13 87371091 87371179 -14501990 - L2 LINE L2 -214 3099 3014 1890 144 3 48 chr13 87371349 87371493 -14501676 + AluJb SINE Alu 1 125 -187 2417 80 0 0 chr13 87371493 87371792 -14501377 + AluY SINE Alu 1 299 -12 1890 144 3 48 chr13 87371792 87371959 -14501210 + AluJb SINE Alu 125 298 -14 28 48 0 0 chr13 87372058 87372100 -14501069 + AT_rich Low_complexity Low_complexity 1 42 0 700 248 184 0 chr13 87372460 87372678 -14500491 - MIR SINE MIR -2 260 3 2520 121 6 3 chr13 87373435 87373798 -14499371 + THE1B LTR MaLR 1 364 0 274 287 28 55 chr13 87373887 87374008 -14499161 - MIR SINE MIR -68 140 38 2245 117 0 7 chr13 87374190 87374498 -14498671 + AluSx SINE Alu 5 310 -2 32 57 0 0 chr13 87374667 87374720 -14498449 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr13 87378472 87378494 -14494675 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 87378512 87378533 -14494636 + AT_rich Low_complexity Low_complexity 1 21 0 2576 50 0 0 chr13 87378538 87378835 -14494334 + AluY SINE Alu 1 297 -14 306 87 0 0 chr13 87379468 87379514 -14493655 + (TG)n Simple_repeat Simple_repeat 1 46 0 494 294 26 66 chr13 87379542 87379856 -14493313 - L2 LINE L2 -277 3036 2731 324 275 58 64 chr13 87380598 87380911 -14492258 + MLT1L LTR MaLR 142 452 -163 1509 170 0 30 chr13 87381153 87381418 -14491751 - AluJb SINE Alu -8 304 48 1817 121 4 4 chr13 87381496 87381761 -14491408 - AluSx SINE Alu 0 312 48 2322 86 30 0 chr13 87381828 87382131 -14491038 - AluSx SINE Alu 0 312 1 200 211 0 0 chr13 87382862 87382900 -14490269 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 265 20 0 chr13 87383048 87383097 -14490072 - MIR3 SINE MIR -5 203 154 195 309 25 112 chr13 87383131 87383409 -14489760 - L2 LINE L2 -73 3199 2946 1361 104 50 9 chr13 87383702 87383924 -14489245 - MSTA LTR MaLR 0 428 198 372 298 174 6 chr13 87383931 87384092 -14489077 + L2 LINE L2 3126 3313 0 1495 173 25 43 chr13 87384293 87384617 -14488552 - MER58B DNA MER1_type -15 326 9 231 304 14 0 chr13 87384647 87384716 -14488453 - L3 LINE CR1 -179 1398 1329 373 293 64 37 chr13 87384723 87384911 -14488258 - L1ME3A LINE L1 -12 6158 5966 252 159 0 63 chr13 87384967 87385030 -14488139 - L1ME3A LINE L1 -198 5964 5906 233 106 0 21 chr13 87385042 87385089 -14488080 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 1726 152 25 7 chr13 87385093 87385370 -14487799 - AluJb SINE Alu -9 303 22 2322 97 3 0 chr13 87385380 87385689 -14487480 - AluSp SINE Alu -3 310 1 338 339 94 17 chr13 87385780 87385960 -14487209 - L3 LINE CR1 -767 810 617 2104 128 13 0 chr13 87386203 87386508 -14486661 + AluSx SINE Alu 1 309 -3 472 63 0 0 chr13 87387429 87387492 -14485677 - L1PA13 LINE L1 -16 6147 6085 5919 102 14 28 chr13 87387499 87387789 -14485380 - L1PB1 LINE L1 -2 6149 5856 2125 85 0 0 chr13 87387789 87388093 -14485076 + AluSc SINE Alu 35 309 0 5919 102 14 28 chr13 87388093 87388631 -14484538 - L1PB1 LINE L1 -295 5856 5328 3982 70 4 4 chr13 87388631 87389162 -14484007 - L1PA7 LINE L1 0 6154 5624 5919 102 14 28 chr13 87389162 87389413 -14483756 - L1PB1 LINE L1 -823 5328 5075 693 148 0 0 chr13 87389451 87389552 -14483617 - AluJ/FLAM SINE Alu -211 101 1 2044 123 28 0 chr13 87390143 87390427 -14482742 + AluSx SINE Alu 1 292 -20 730 168 0 0 chr13 87390436 87390555 -14482614 + AluJo/FLAM SINE Alu 15 133 -179 1654 163 34 14 chr13 87390558 87390852 -14482317 + AluJb SINE Alu 1 300 -12 495 232 94 2 chr13 87391170 87391352 -14481817 - MIR SINE MIR -24 238 2 358 264 23 0 chr13 87392084 87392171 -14480998 + L2 LINE L2 3184 3272 0 831 154 66 0 chr13 87392316 87392452 -14480717 + AluSc SINE Alu 148 292 -17 213 362 0 11 chr13 87392943 87393037 -14480132 + MIR SINE MIR 50 142 -66 2136 101 28 0 chr13 87393542 87393830 -14479339 + AluY SINE Alu 3 298 -13 2346 63 0 11 chr13 87394154 87394461 -14478708 - AluSg SINE Alu 0 304 1 21 57 0 0 chr13 87394825 87394860 -14478309 + AT_rich Low_complexity Low_complexity 1 35 0 1256 164 71 13 chr13 87396944 87397170 -14475999 - AluJo SINE Alu -6 306 68 1706 138 86 0 chr13 87397194 87397462 -14475707 - AluSg SINE Alu -19 291 1 414 0 0 0 chr13 87398211 87398257 -14474912 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 2199 95 7 0 chr13 87398257 87398541 -14474628 - AluSq SINE Alu -27 286 1 180 0 0 0 chr13 87398657 87398677 -14474492 + (T)n Simple_repeat Simple_repeat 1 20 0 1691 249 92 45 chr13 87399115 87399840 -14473329 - L1MC5 LINE L1 -430 7531 6756 2105 95 14 14 chr13 87399840 87400146 -14473023 - AluY SINE Alu 0 306 1 1691 249 92 45 chr13 87400146 87400285 -14472884 - L1MC5 LINE L1 -1205 6756 6625 247 188 42 42 chr13 87400328 87400424 -14472745 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 22 35 0 0 chr13 87400470 87400499 -14472670 + AT_rich Low_complexity Low_complexity 1 29 0 815 264 117 75 chr13 87401010 87401048 -14472121 - HAL1b LINE L1 -696 652 617 633 224 133 103 chr13 87401048 87401319 -14471850 - MER58B DNA MER1_type -2079 341 57 2357 103 6 0 chr13 87401319 87401630 -14471539 + AluSq SINE Alu 1 313 0 633 224 133 103 chr13 87401630 87401689 -14471480 - MER58B DNA MER1_type -2363 57 1 815 264 117 75 chr13 87401689 87401800 -14471369 - HAL1b LINE L1 -731 617 512 1623 198 0 14 chr13 87401800 87402093 -14471076 + AluJo SINE Alu 11 299 -13 815 264 117 75 chr13 87402093 87402488 -14470681 - HAL1b LINE L1 -836 512 84 28 0 0 0 chr13 87402488 87402516 -14470653 + AT_rich Low_complexity Low_complexity 1 28 0 2460 79 0 10 chr13 87402733 87403037 -14470132 + AluSg SINE Alu 1 301 -9 1926 123 48 14 chr13 87403150 87403443 -14469726 + AluSq SINE Alu 1 303 -10 311 277 129 26 chr13 87403689 87403844 -14469325 - L1MC3 LINE L1 -952 6856 6686 1828 166 0 33 chr13 87403875 87404182 -14468987 - AluJb SINE Alu -15 297 1 769 168 0 22 chr13 87404548 87404685 -14468484 - FAM SINE Alu -36 149 16 2164 112 25 0 chr13 87406016 87406302 -14466867 - AluSx SINE Alu -19 293 1 618 252 85 58 chr13 87406390 87406919 -14466250 + MER39 LTR ERV1 1 707 0 266 306 39 97 chr13 87407079 87407118 -14466051 + L2 LINE L2 2156 2196 -1118 2155 116 0 3 chr13 87407118 87407420 -14465749 - AluSc SINE Alu -6 303 3 266 306 39 97 chr13 87407420 87407480 -14465689 + L2 LINE L2 2196 2258 -1056 2395 86 0 0 chr13 87407480 87407772 -14465397 + AluSc SINE Alu 1 292 -17 266 306 39 97 chr13 87407772 87407929 -14465240 + L2 LINE L2 2258 2398 -916 246 306 0 14 chr13 87408610 87408682 -14464487 + L2 LINE L2 3185 3255 -17 207 162 0 0 chr13 87409302 87409339 -14463830 + (CA)n Simple_repeat Simple_repeat 2 38 0 2244 99 0 0 chr13 87409371 87409674 -14463495 - AluSq SINE Alu 0 303 1 1678 156 6 81 chr13 87409700 87410020 -14463149 - AluJo SINE Alu -16 296 1 288 375 27 22 chr13 87410597 87410821 -14462348 + L2 LINE L2 1433 1657 -1657 210 333 61 30 chr13 87410857 87410956 -14462213 - L2 LINE L2 -37 3235 3134 * 712 317 93 51 chr13 87410954 87411467 -14461702 + L2 LINE L2 1683 2232 -1082 1765 181 6 16 chr13 87411467 87411782 -14461387 - AluJo SINE Alu 0 312 1 712 317 93 51 chr13 87411782 87411937 -14461232 + L2 LINE L2 2232 2379 -935 522 226 0 0 chr13 87411963 87412065 -14461104 + MER58A DNA MER1_type 44 145 0 367 186 14 0 chr13 87412109 87412179 -14460990 + MER58A DNA MER1_type 154 224 0 309 326 23 23 chr13 87412288 87412420 -14460749 + L2 LINE L2 2543 2674 -640 5975 124 27 27 chr13 87412426 87414177 -14458992 - L1MA3 LINE L1 -106 6199 4449 2114 113 0 10 chr13 87414177 87414469 -14458700 - AluSc SINE Alu -20 289 1 5975 124 27 27 chr13 87414469 87414522 -14458647 - L1MA3 LINE L1 -1856 4449 4397 216 0 0 0 chr13 87414522 87414546 -14458623 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 5975 124 27 27 chr13 87414546 87414607 -14458562 - L1MA3 LINE L1 -1908 4397 4329 230 296 0 0 chr13 87414872 87414926 -14458243 + L2 LINE L2 3008 3061 -252 500 263 12 62 chr13 87415001 87415161 -14458008 - L2 LINE L2 0 3313 3162 898 173 0 88 chr13 87415227 87415366 -14457803 + MER2 DNA MER2_type 1 114 -231 2028 146 3 22 chr13 87415366 87415682 -14457487 - AluSx SINE Alu -2 310 1 898 173 0 88 chr13 87415682 87415768 -14457401 + MER2 DNA MER2_type 114 206 -139 302 182 15 0 chr13 87415796 87415862 -14457307 + C-rich Low_complexity Low_complexity 4 70 0 255 196 0 0 chr13 87415869 87415915 -14457254 + MER2 DNA MER2_type 300 345 0 369 298 63 70 chr13 87415919 87416163 -14457006 - L2 LINE L2 -289 3024 2789 325 182 40 149 chr13 87416178 87416326 -14456843 + L2 LINE L2 3180 3311 -2 2240 109 0 0 chr13 87416572 87416866 -14456303 + AluSq SINE Alu 3 296 -17 2270 92 3 0 chr13 87416908 87417200 -14455969 + AluSg SINE Alu 1 293 -17 302 227 0 40 chr13 87417286 87417361 -14455808 - L1M4 LINE L1 -326 5852 5781 1274 74 0 12 chr13 87417375 87417537 -14455632 + AluSq SINE Alu 62 221 -92 891 169 55 72 chr13 87417550 87417596 -14455573 - L1M4 LINE L1 -362 5812 5767 1643 106 4 8 chr13 87417596 87417832 -14455337 + AluSx SINE Alu 62 296 -16 891 169 55 72 chr13 87417832 87417924 -14455245 - L1M4 LINE L1 -407 5767 5675 1891 106 33 53 chr13 87417924 87418225 -14454944 - AluSq SINE Alu -18 295 1 891 169 55 72 chr13 87418225 87418321 -14454848 - L1M4 LINE L1 -499 5675 5581 574 147 0 228 chr13 87418349 87418481 -14454688 + MLT1E LTR MaLR 56 166 -427 226 143 0 24 chr13 87418460 87418502 -14454667 + MLT1E LTR MaLR 119 159 -434 * 894 268 52 32 chr13 87418502 87418849 -14454320 + MLT1E LTR MaLR 119 472 -121 324 304 17 39 chr13 87419520 87419701 -14453468 - MER89-int LTR ERV1 -4880 1921 1745 1959 117 13 50 chr13 87419993 87420310 -14452859 - AluSx SINE Alu -3 309 5 227 211 0 0 chr13 87421164 87421216 -14451953 + MER110 LTR ERV1 424 475 -16 2067 108 44 27 chr13 87421490 87421786 -14451383 - AluSx SINE Alu -9 303 3 1438 151 25 114 chr13 87421795 87422120 -14451049 - AluYb8 SINE Alu -22 296 1 3777 123 73 76 chr13 87422969 87424351 -14448818 - pTR5 LTR ERV1 0 2438 72 471 337 63 60 chr13 87424408 87425031 -14448138 - L2 LINE L2 -178 3094 2456 1820 158 3 10 chr13 87425536 87425834 -14447335 - AluSx SINE Alu -16 296 1 24 0 0 0 chr13 87426032 87426056 -14447113 + AT_rich Low_complexity Low_complexity 1 24 0 811 231 91 18 chr13 87426530 87426751 -14446418 - MIR SINE MIR -1 261 25 1755 104 119 19 chr13 87426751 87427020 -14446149 - AluSx SINE Alu -16 296 1 2208 114 0 0 chr13 87427760 87428058 -14445111 - AluSx SINE Alu -13 299 2 30 0 0 0 chr13 87428322 87428352 -14444817 + AT_rich Low_complexity Low_complexity 1 30 0 2229 109 3 10 chr13 87428359 87428661 -14444508 + AluSx SINE Alu 1 300 -12 4971 36 3 0 chr13 87429045 87429634 -14443535 + LTR10C LTR ERV1 1 591 0 231 295 33 0 chr13 87429837 87429898 -14443271 - L2 LINE L2 -52 3261 3199 2181 107 20 7 chr13 87430005 87430305 -14442864 + AluSx SINE Alu 1 304 -8 399 280 32 24 chr13 87430451 87430576 -14442593 - L2 LINE L2 0 3313 3188 233 390 0 0 chr13 87430929 87431024 -14442145 + L2 LINE L2 3134 3228 -44 582 256 0 0 chr13 87431497 87431614 -14441555 - FLAM_A SINE Alu -16 117 1 240 323 118 74 chr13 87431910 87432078 -14441091 + L2 LINE L2 2836 2995 -318 480 35 0 0 chr13 87432078 87432136 -14441033 + (TG)n Simple_repeat Simple_repeat 1 58 0 1847 146 7 7 chr13 87432137 87432424 -14440745 - AluJb SINE Alu -25 287 1 240 323 118 74 chr13 87432424 87432618 -14440551 + L2 LINE L2 2994 3216 -97 448 282 135 55 chr13 87432680 87433102 -14440067 - L1MC4a LINE L1 -1964 5844 5389 210 235 20 20 chr13 87433406 87433457 -14439712 + L2 LINE L2 3263 3313 0 281 82 20 0 chr13 87434630 87434679 -14438490 + (CA)n Simple_repeat Simple_repeat 2 51 0 183 162 0 0 chr13 87435022 87435059 -14438110 + A-rich Low_complexity Low_complexity 1 37 0 2433 90 0 3 chr13 87436193 87436505 -14436664 - AluSq SINE Alu -2 311 1 2193 121 3 9 chr13 87437668 87437983 -14435186 - AluSq SINE Alu 0 313 1 396 316 53 8 chr13 87438950 87439083 -14434086 - MIR SINE MIR -123 139 1 582 316 149 42 chr13 87439611 87440082 -14433087 + L2 LINE L2 2375 2895 -419 183 271 47 84 chr13 87440160 87440267 -14432902 + L2 LINE L2 2958 3060 -253 310 224 67 48 chr13 87440358 87440568 -14432601 - L1MC4 LINE L1 -1 8041 7828 411 260 34 62 chr13 87440615 87440823 -14432346 - L1ME2 LINE L1 -19 6145 5944 3076 206 22 20 chr13 87440829 87441209 -14431960 - L1MB7 LINE L1 -19 6165 5782 1770 174 23 3 chr13 87441209 87441508 -14431661 - AluJb SINE Alu -7 305 1 3076 206 22 20 chr13 87441508 87441860 -14431309 - L1MB7 LINE L1 -402 5782 5432 1691 214 64 9 chr13 87441860 87442348 -14430821 + L1MDa LINE L1 2576 3091 -3449 2018 143 3 0 chr13 87442652 87442939 -14430230 - AluSx SINE Alu -24 288 1 324 0 0 0 chr13 87444673 87444709 -14428460 + (TG)n Simple_repeat Simple_repeat 1 36 0 234 294 0 48 chr13 87445251 87445355 -14427814 - MLT1I LTR MaLR -106 340 207 298 391 15 0 chr13 87445449 87445582 -14427587 + L2 LINE L2 2506 2640 -674 640 321 41 8 chr13 87445619 87445865 -14427304 - LTR16A LTR ERVL -54 396 143 345 246 55 74 chr13 87445969 87446065 -14427104 - L1M4 LINE L1 -3184 3198 3102 1913 141 0 59 chr13 87446065 87446371 -14426798 - AluJb SINE Alu -24 288 1 345 246 55 74 chr13 87446371 87446593 -14426576 - L1M4 LINE L1 -3280 3102 2886 2244 98 3 16 chr13 87446646 87446951 -14426218 - AluSx SINE Alu -11 301 1 2366 90 3 0 chr13 87446959 87447259 -14425910 - AluY SINE Alu -10 301 1 2299 107 0 7 chr13 87447259 87447559 -14425610 - AluSx SINE Alu -14 298 1 237 203 16 16 chr13 87447870 87447934 -14425235 - L1M4 LINE L1 -3938 2446 2383 27 29 0 0 chr13 87447937 87447971 -14425198 + AT_rich Low_complexity Low_complexity 1 34 0 3569 212 43 6 chr13 87448187 87448491 -14424678 - L1MC/D LINE L1 -743 5403 5112 2273 85 0 23 chr13 87448491 87448797 -14424372 - AluSq SINE Alu -14 299 1 3569 212 43 6 chr13 87448797 87449706 -14423463 - L1MC/D LINE L1 -1034 5112 4252 224 82 0 61 chr13 87450193 87450422 -14422747 + (TTTTC)n Simple_repeat Simple_repeat 1 180 0 947 179 22 11 chr13 87450422 87450598 -14422571 - AluSg/x SINE Alu 0 541 368 2347 98 0 9 chr13 87450598 87450914 -14422255 - AluSp SINE Alu 0 313 1 257 242 78 82 chr13 87451063 87451294 -14421875 - L1MC/D LINE L1 -3775 2371 2142 25 31 0 0 chr13 87451294 87451326 -14421843 + AT_rich Low_complexity Low_complexity 1 32 0 5037 223 40 11 chr13 87451519 87451846 -14421323 - L1MC/D LINE L1 -743 5403 5087 2276 85 0 23 chr13 87451846 87452152 -14421017 - AluSq SINE Alu -14 299 1 5037 223 40 11 chr13 87452152 87453421 -14419748 - L1MC/D LINE L1 -1059 5087 3887 243 364 74 56 chr13 87453815 87454084 -14419085 - L2 LINE L2 -533 2781 2508 308 336 58 18 chr13 87454091 87454314 -14418855 + L1ME LINE L1 5621 5852 -318 617 270 100 46 chr13 87454443 87454813 -14418356 + L1MC4 LINE L1 7194 7583 -459 329 332 67 53 chr13 87455613 87456044 -14417125 + L2 LINE L2 2544 3179 -134 437 220 0 0 chr13 87456072 87456163 -14417006 - AluJb SINE Alu -86 226 136 23 0 0 0 chr13 87456728 87456751 -14416418 + AT_rich Low_complexity Low_complexity 1 23 0 1431 307 26 67 chr13 87456816 87457207 -14415962 - THE1C LTR MaLR 0 375 1 1610 172 28 14 chr13 87457692 87457982 -14415187 + AluJo SINE Alu 1 294 -18 2098 112 42 0 chr13 87458910 87459197 -14413972 - AluSc SINE Alu -10 299 1 23 33 0 0 chr13 87459417 87459447 -14413722 + AT_rich Low_complexity Low_complexity 1 30 0 2854 209 48 14 chr13 87460127 87460757 -14412412 + MER82 DNA MER2_type 3 653 0 379 227 18 9 chr13 87462131 87462241 -14410928 - L1ME3A LINE L1 -206 5964 5854 1553 233 56 14 chr13 87462347 87462790 -14410379 - MLT1C LTR MaLR 0 467 6 477 340 95 13 chr13 87463412 87463791 -14409378 - L1MDa LINE L1 -3957 2439 2030 845 140 0 22 chr13 87464081 87464217 -14408952 + FLAM_C SINE Alu 1 133 0 292 263 120 54 chr13 87464427 87464903 -14408266 - L1MDa LINE L1 -4871 1334 824 1291 207 12 110 chr13 87465498 87465629 -14407540 + L1M4 LINE L1 4567 4709 -1437 237 33 0 0 chr13 87465629 87465659 -14407510 + (CA)n Simple_repeat Simple_repeat 2 31 0 1291 207 12 110 chr13 87465659 87465677 -14407492 + L1M4 LINE L1 4709 4727 -1419 1592 168 25 25 chr13 87465677 87465962 -14407207 + AluJo SINE Alu 2 286 -26 1291 207 12 110 chr13 87465962 87466322 -14406847 + L1M4 LINE L1 4727 5027 -1119 1067 199 33 16 chr13 87466328 87466698 -14406471 + L1M4 LINE L1 5127 5502 -676 2226 102 0 0 chr13 87466700 87467008 -14406161 + AluY SINE Alu 1 308 0 834 188 21 0 chr13 87467008 87467208 -14405961 + L1M4c LINE L1 2415 2618 -3764 9086 100 36 10 chr13 87467220 87468547 -14404622 + L1P3 LINE L1 2 1363 -5098 2445 96 6 0 chr13 87468546 87468890 -14404279 - L1P LINE L1 -3852 2294 1949 * 5298 95 5 1 chr13 87468884 87469654 -14403515 + L1P3 LINE L1 2720 3492 -2969 2291 102 0 0 chr13 87470351 87470666 -14402503 - AluSx SINE Alu 0 312 1 23 68 0 0 chr13 87470991 87471035 -14402134 + AT_rich Low_complexity Low_complexity 1 44 0 1584 144 7 37 chr13 87471156 87471426 -14401743 + AluSx SINE Alu 51 312 0 2238 100 3 3 chr13 87471778 87472077 -14401092 + AluSx SINE Alu 1 299 -13 318 283 142 9 chr13 87472574 87472687 -14400482 - L2 LINE L2 0 3272 3145 2554 55 0 13 chr13 87472842 87473151 -14400018 + AluSx SINE Alu 1 305 -7 22 35 0 0 chr13 87473641 87473670 -14399499 + AT_rich Low_complexity Low_complexity 1 29 0 327 305 67 48 chr13 87473989 87474199 -14398970 - HAL1 LINE L1 -1099 1408 1195 608 215 140 15 chr13 87474370 87474570 -14398599 - MER2 DNA MER2_type 0 345 121 801 231 0 6 chr13 87474571 87474731 -14398438 + AluJb SINE Alu 137 295 -17 677 223 8 0 chr13 87474731 87474861 -14398308 - MER2 DNA MER2_type -213 132 2 184 222 19 56 chr13 87475087 87475141 -14398028 - L3 LINE CR1 -297 1280 1229 629 310 22 5 chr13 87475761 87475945 -14397224 + MIR SINE MIR 57 243 -19 195 242 0 0 chr13 87476012 87476074 -14397095 + (TTA)n Simple_repeat Simple_repeat 3 64 0 312 48 0 0 chr13 87476374 87476416 -14396753 + (TG)n Simple_repeat Simple_repeat 2 43 0 2283 133 13 23 chr13 87477407 87477799 -14395370 - MLT1B LTR MaLR 0 390 3 341 321 30 24 chr13 87477946 87478114 -14395055 + MARNA DNA Mariner 316 484 -102 298 143 0 0 chr13 87478381 87478430 -14394739 - Alu SINE Alu -2 299 251 1524 180 3 42 chr13 87479676 87479987 -14393182 - AluJb SINE Alu -9 303 5 2729 228 95 4 chr13 87480010 87480759 -14392410 - L1MC4 LINE L1 -5 8037 7221 235 292 62 0 chr13 87481745 87481841 -14391328 - MER103 DNA DNA -45 121 20 702 34 0 0 chr13 87482135 87482224 -14390945 + (TTCC)n Simple_repeat Simple_repeat 3 91 0 1985 138 10 3 chr13 87483183 87483472 -14389697 - AluSx SINE Alu -17 295 5 21 0 0 0 chr13 87485589 87485610 -14387559 + AT_rich Low_complexity Low_complexity 1 21 0 278 66 0 151 chr13 87491336 87491442 -14381727 - AluSc SINE Alu -12 287 198 1867 84 19 8 chr13 87491605 87491866 -14381303 - AluSc SINE Alu -45 264 1 1799 172 0 3 chr13 87492048 87492339 -14380830 - AluJb SINE Alu -22 290 1 23 54 0 0 chr13 87492396 87492433 -14380736 + AT_rich Low_complexity Low_complexity 1 37 0 2161 129 0 6 chr13 87492826 87493137 -14380032 + AluSx SINE Alu 1 309 -3 2066 130 0 0 chr13 87494667 87494960 -14378209 + AluSg1 SINE Alu 1 293 -16 443 305 63 6 chr13 87494976 87495150 -14378019 + MIR SINE MIR 78 261 -1 2180 120 0 0 chr13 87495201 87495502 -14377667 + AluSx SINE Alu 1 301 -11 381 392 20 0 chr13 87495692 87495845 -14377324 + L2 LINE L2 3117 3272 0 555 306 62 28 chr13 87496136 87496460 -14376709 + L1ME LINE L1 5476 5810 -311 306 256 0 0 chr13 87496684 87496766 -14376403 - L1MC4 LINE L1 0 8042 7961 262 273 0 40 chr13 87496781 87496880 -14376289 + CT-rich Low_complexity Low_complexity 2 96 0 312 231 0 0 chr13 87496881 87496946 -14376223 - L1MC4 LINE L1 -141 7901 7837 1151 225 55 25 chr13 87496983 87497544 -14375625 - LTR8 LTR ERV1 -14 677 1 1614 203 98 8 chr13 87497887 87498276 -14374893 - MER21B LTR ERV1 -342 521 98 2549 186 14 58 chr13 87498331 87498955 -14374214 + L1MC4 LINE L1 7443 8039 -3 48 53 0 0 chr13 87498960 87499036 -14374133 + AT_rich Low_complexity Low_complexity 1 76 0 2069 92 4 0 chr13 87500528 87500790 -14372379 - AluSx SINE Alu -15 297 35 383 320 142 59 chr13 87501200 87501352 -14371817 + L2 LINE L2 2319 2457 -857 1728 188 0 3 chr13 87501352 87501639 -14371530 - AluJb SINE Alu -26 286 1 383 320 142 59 chr13 87501639 87502027 -14371142 + L2 LINE L2 2457 2904 -410 186 71 0 0 chr13 87502075 87502103 -14371066 + (TC)n Simple_repeat Simple_repeat 1 28 0 13701 34 7 0 chr13 87502103 87504524 -14368645 - L1PA5 LINE L1 -8 6146 3705 1618 166 23 0 chr13 87504526 87504785 -14368384 - AluJo SINE Alu -35 277 13 405 0 0 0 chr13 87505343 87505388 -14367781 + (TG)n Simple_repeat Simple_repeat 2 46 0 251 239 14 0 chr13 87505787 87505858 -14367311 - MLT1J LTR MaLR -30 481 410 541 246 101 0 chr13 87506022 87506201 -14366968 - MLT1J LTR MaLR -314 197 1 24 32 0 0 chr13 87506213 87506244 -14366925 + AT_rich Low_complexity Low_complexity 1 31 0 1942 161 3 22 chr13 87506309 87506626 -14366543 - AluJo SINE Alu 0 312 2 934 216 42 5 chr13 87506810 87507000 -14366169 - MER58A DNA MER1_type -23 201 5 2180 100 20 7 chr13 87507067 87507368 -14365801 - AluSg SINE Alu -5 305 1 477 275 100 19 chr13 87507534 87507694 -14365475 - MIR SINE MIR -54 208 36 14905 137 37 11 chr13 87508094 87510733 -14362436 + Tigger2 DNA MER2_type 1 2707 -11 2326 228 79 21 chr13 87510817 87511691 -14361478 - L1ME1 LINE L1 -6 6160 5231 1004 129 14 0 chr13 87511693 87511833 -14361336 + AluJb SINE Alu 1 142 -170 1857 123 0 8 chr13 87511834 87512095 -14361074 + AluSg SINE Alu 1 259 -51 192 158 0 0 chr13 87512551 87512589 -14360580 + A-rich Low_complexity Low_complexity 1 38 0 2332 104 7 0 chr13 87513724 87514031 -14359138 - AluSq SINE Alu -2 311 3 9175 104 15 0 chr13 87514103 87515371 -14357798 + HSMAR1 DNA Mariner 1 1287 0 212 303 182 10 chr13 87516829 87516928 -14356241 + L2 LINE L2 3156 3271 -1 2218 116 3 3 chr13 87516976 87517279 -14355890 - AluSg SINE Alu -7 303 1 298 284 0 0 chr13 87517526 87517607 -14355562 + (TA)n Simple_repeat Simple_repeat 2 82 0 290 307 87 16 chr13 87517885 87518012 -14355157 - MIR3 SINE MIR -39 169 34 190 0 0 62 chr13 87519128 87519160 -14354009 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 394 205 66 41 chr13 87519317 87519439 -14353730 - MER63 DNA MER1_type -311 751 1 463 303 52 41 chr13 87519723 87520014 -14353155 + L1MEd LINE L1 997 1381 -1109 261 123 53 35 chr13 87520139 87520196 -14352973 + HAL1b LINE L1 480 537 -811 1014 277 185 23 chr13 87520295 87520960 -14352209 + HAL1 LINE L1 13 785 -1722 2184 119 3 0 chr13 87521022 87521324 -14351845 + AluSp SINE Alu 1 303 -10 245 224 66 26 chr13 87521659 87521735 -14351434 - L2 LINE L2 -1 3271 3193 280 257 71 0 chr13 87522173 87522243 -14350926 - L2 LINE L2 -51 3262 3188 244 289 77 0 chr13 87522864 87522968 -14350201 + MER112 DNA MER1_type 4 115 -145 545 217 83 33 chr13 87523077 87523257 -14349912 + MER5A DNA MER1_type 1 189 0 540 134 63 31 chr13 87523268 87523395 -14349774 - Charlie1 DNA MER1_type -59 2702 2572 612 245 65 33 chr13 87523396 87523580 -14349589 - Charlie1 DNA MER1_type -2570 191 2 1498 183 47 3 chr13 87524048 87524349 -14348820 + MER2 DNA MER2_type 1 314 -31 270 203 8 158 chr13 87524989 87525122 -14348047 + L2 LINE L2 3195 3307 -6 240 35 0 0 chr13 87525163 87525192 -14347977 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 348 248 99 89 chr13 87526465 87526667 -14346502 - MER3 DNA MER1_type -1 208 5 323 281 33 41 chr13 87526919 87527040 -14346129 - L1ME4a LINE L1 -66 6055 5936 2336 95 0 13 chr13 87527307 87527611 -14345558 - AluSx SINE Alu -12 300 1 1741 164 0 30 chr13 87527757 87528056 -14345113 - AluJo SINE Alu -8 304 15 1281 117 10 5 chr13 87528058 87528254 -14344915 + AluSg/x SINE Alu 101 297 -15 551 213 52 7 chr13 87528260 87528415 -14344754 + L1ME1 LINE L1 5304 5465 -713 817 253 99 12 chr13 87528415 87528747 -14344422 + L1ME1 LINE L1 5741 6104 -74 277 30 0 0 chr13 87528750 87528783 -14344386 - U2 snRNA snRNA -155 33 1 2073 130 3 0 chr13 87528837 87529137 -14344032 + AluSx SINE Alu 1 301 -11 193 321 152 12 chr13 87529269 87529434 -14343735 - L2 LINE L2 -811 2503 2316 14823 121 35 15 chr13 87529750 87531923 -14341246 + Tigger1 DNA MER2_type 1 2226 -192 2096 100 0 7 chr13 87531923 87532213 -14340956 - AluY SINE Alu -18 293 6 14823 121 35 15 chr13 87532213 87532409 -14340760 + Tigger1 DNA MER2_type 2226 2417 -1 833 123 7 0 chr13 87533755 87533893 -14339276 + (TTTC)n Simple_repeat Simple_repeat 3 141 0 270 203 8 158 chr13 87534465 87534598 -14338571 + L2 LINE L2 3195 3307 -6 240 35 0 0 chr13 87534639 87534668 -14338501 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 1188 139 6 0 chr13 87535094 87535267 -14337902 + AluSg/x SINE Alu 115 288 -22 2018 118 44 27 chr13 87535276 87535573 -14337596 + AluSx SINE Alu 3 304 -8 227 211 0 0 chr13 87535847 87535899 -14337270 - MER110 LTR ERV1 -16 475 424 1472 137 16 59 chr13 87536753 87537009 -14336160 + AluSx SINE Alu 5 249 -63 433 184 18 9 chr13 87537130 87537239 -14335930 + CT-rich Low_complexity Low_complexity 3 112 0 1830 160 13 16 chr13 87537257 87537433 -14335736 - AluSx SINE Alu 0 312 136 2391 92 0 9 chr13 87537433 87537749 -14335420 - AluSp SINE Alu 0 313 1 1830 160 13 16 chr13 87537749 87537885 -14335284 - AluSx SINE Alu -176 136 1 2321 214 60 51 chr13 87540296 87540722 -14332447 + L1MB8 LINE L1 2174 2595 -3787 1783 170 17 3 chr13 87540722 87541016 -14332153 - AluJo SINE Alu -14 298 1 1558 192 3 51 chr13 87541016 87541329 -14331840 - AluJo SINE Alu -4 308 11 2321 214 60 51 chr13 87541329 87541987 -14331182 + L1MB8 LINE L1 2594 3269 -3113 1808 199 0 0 chr13 87541993 87542295 -14330874 + AluJb SINE Alu 1 302 -10 1219 181 149 12 chr13 87542312 87542399 -14330770 + AluJb SINE Alu 11 85 -227 437 0 19 0 chr13 87542399 87542452 -14330717 + (TAA)n Simple_repeat Simple_repeat 2 55 0 1219 181 149 12 chr13 87542452 87542612 -14330557 + AluJb SINE Alu 85 292 -20 380 195 8 23 chr13 87542615 87542743 -14330426 + GA-rich Low_complexity Low_complexity 3 128 0 3458 250 138 11 chr13 87542766 87545491 -14327678 + L1MB8 LINE L1 3300 6398 -16 507 280 148 30 chr13 87545881 87546253 -14326916 + L1ME2 LINE L1 56 471 -5599 599 255 44 78 chr13 87546515 87546983 -14326186 + L1ME2 LINE L1 530 1012 -5068 712 167 26 13 chr13 87546983 87547139 -14326030 + L1MA10 LINE L1 6171 6328 -6 2050 75 11 15 chr13 87547139 87547407 -14325762 + AluSx SINE Alu 46 312 0 599 255 44 78 chr13 87547407 87547461 -14325708 + L1ME2 LINE L1 1010 1047 -5033 1007 246 65 6 chr13 87547545 87547866 -14325303 + L1ME2 LINE L1 3999 4338 -1742 454 212 95 80 chr13 87548017 87548264 -14324905 + L1ME2 LINE L1 4349 4602 -1478 1928 126 67 45 chr13 87548264 87548620 -14324549 - THE1B LTR MaLR 0 364 1 454 212 95 80 chr13 87548620 87548636 -14324533 + L1ME2 LINE L1 4602 4616 -1464 1604 219 115 39 chr13 87548686 87548877 -14324292 + L1ME2 LINE L1 4892 5067 -1031 4463 149 69 2 chr13 87548877 87549735 -14323434 + L1MC2 LINE L1 5425 6339 -5 1604 219 115 39 chr13 87549735 87550474 -14322695 + L1ME2 LINE L1 5067 5893 -205 674 213 107 18 chr13 87550644 87550813 -14322356 - MIR SINE MIR 0 262 79 1594 158 34 30 chr13 87553050 87553348 -14319821 + AluJo SINE Alu 1 299 -13 274 358 52 1 chr13 87553428 87553558 -14319611 - MIR SINE MIR -67 141 7 214 251 117 76 chr13 87554035 87554206 -14318963 - MIR SINE MIR -49 213 36 252 326 109 0 chr13 87554714 87554806 -14318363 - L2 LINE L2 -49 3223 3122 22 0 0 0 chr13 87555170 87555192 -14317977 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr13 87555760 87555780 -14317389 + (TG)n Simple_repeat Simple_repeat 1 20 0 183 42 0 0 chr13 87555915 87555939 -14317230 + (T)n Simple_repeat Simple_repeat 1 24 0 2254 101 0 10 chr13 87555957 87556265 -14316904 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr13 87556703 87556726 -14316443 + AT_rich Low_complexity Low_complexity 1 23 0 257 254 17 0 chr13 87557759 87557818 -14315351 - L2 LINE L2 0 3313 3254 2254 88 0 10 chr13 87558352 87558646 -14314523 - AluSx SINE Alu -2 310 20 733 195 26 26 chr13 87559573 87559763 -14313406 + L1MB3 LINE L1 4372 4561 -1585 594 185 0 34 chr13 87559764 87559883 -14313286 + FLAM_A SINE Alu 28 142 0 1668 222 99 50 chr13 87559883 87560344 -14312825 + L1MB3 LINE L1 4553 5052 -1094 1892 145 0 24 chr13 87560344 87560663 -14312506 + AluSx SINE Alu 1 312 0 1668 222 99 50 chr13 87560663 87560786 -14312383 + L1MB3 LINE L1 5052 5167 -979 264 133 0 0 chr13 87560873 87560918 -14312251 - L1 LINE L1 -914 5232 5188 1838 159 42 17 chr13 87560948 87561018 -14312151 + L1MB3 LINE L1 5182 5249 -934 2168 104 7 14 chr13 87561018 87561325 -14311844 - AluSx SINE Alu 0 305 1 1838 159 42 17 chr13 87561325 87561688 -14311481 + L1MB3 LINE L1 5249 5614 -569 1875 156 27 8 chr13 87561693 87562059 -14311110 + L1MB3 LINE L1 5808 6180 -3 2317 102 0 0 chr13 87562111 87562426 -14310743 + AluSx SINE Alu 1 312 0 5048 95 5 1 chr13 87563122 87563892 -14309277 - L1P3 LINE L1 -2969 3492 2720 2355 90 6 0 chr13 87563886 87564230 -14308939 + L1P LINE L1 1949 2294 -3852 * 9001 86 36 8 chr13 87564229 87565554 -14307615 - L1P3 LINE L1 -5098 1363 2 7532 173 21 23 chr13 87565566 87565767 -14307402 - L1 LINE L1 -3764 3084 2884 2396 70 0 0 chr13 87565767 87566075 -14307094 - AluY SINE Alu 0 308 1 7532 173 21 23 chr13 87566075 87567678 -14305491 - L1 LINE L1 -3964 2884 1285 1466 233 98 62 chr13 87567679 87567814 -14305355 + L1ME LINE L1 4418 4547 -1631 2517 111 6 6 chr13 87567814 87568174 -14304995 - THE1B LTR MaLR 0 364 5 1466 233 98 62 chr13 87568174 87568314 -14304855 + L1ME LINE L1 4547 4681 -1497 237 33 0 0 chr13 87568314 87568344 -14304825 + (CA)n Simple_repeat Simple_repeat 2 31 0 1466 233 98 62 chr13 87568344 87568362 -14304807 + L1ME LINE L1 4681 4697 -1481 1626 165 25 25 chr13 87568362 87568647 -14304522 + AluJo SINE Alu 2 286 -26 1466 233 98 62 chr13 87568647 87569384 -14303785 + L1ME LINE L1 4697 5500 -678 2394 69 0 16 chr13 87569384 87569688 -14303481 + AluY SINE Alu 1 299 -12 1466 233 98 62 chr13 87569688 87569799 -14303370 + L1ME LINE L1 5500 5606 -572 403 228 8 32 chr13 87569918 87570041 -14303128 - LTR28 LTR ERV1 0 1020 901 1642 182 122 101 chr13 87570121 87570851 -14302318 - LTR1B LTR ERV1 -81 745 1 241 312 11 11 chr13 87570922 87571015 -14302154 + L1ME LINE L1 5578 5670 -451 1285 149 0 5 chr13 87571385 87571573 -14301596 - AluJo SINE Alu -125 187 1 1410 168 74 28 chr13 87571627 87571912 -14301257 + AluJb SINE Alu 1 298 -14 2194 117 3 0 chr13 87572309 87572607 -14300562 - AluSx SINE Alu -13 299 1 28 29 0 0 chr13 87573245 87573280 -14299889 + AT_rich Low_complexity Low_complexity 1 35 0 353 289 110 36 chr13 87573678 87573890 -14299279 + L1MC/D LINE L1 5261 5503 -2305 1789 158 36 7 chr13 87573890 87574193 -14298976 - AluJb SINE Alu 0 312 1 353 289 110 36 chr13 87574193 87574281 -14298888 + L1MC/D LINE L1 5503 5583 -2225 275 176 19 15 chr13 87574575 87574659 -14298510 + L1MC/D LINE L1 5759 5842 -302 2282 80 0 26 chr13 87574660 87574962 -14298207 - AluY SINE Alu -17 294 1 1931 159 17 0 chr13 87576468 87576764 -14296405 + AluJb SINE Alu 1 301 -11 2188 118 3 7 chr13 87576795 87577099 -14296070 + AluSq SINE Alu 1 303 -10 195 349 128 0 chr13 87577263 87577372 -14295797 - L2 LINE L2 -12 3301 3179 2175 98 71 0 chr13 87577586 87577922 -14295247 + L1PA13 LINE L1 5804 6163 0 430 191 0 191 chr13 87578400 87578599 -14294570 - MIR SINE MIR 0 262 102 689 303 161 39 chr13 87578602 87579291 -14293878 - L2 LINE L2 -945 2369 1597 1923 100 0 8 chr13 87579305 87579556 -14293613 - AluSc SINE Alu -18 291 43 284 278 32 56 chr13 87580298 87580424 -14292745 + L2 LINE L2 3118 3240 -73 189 0 0 0 chr13 87580480 87580501 -14292668 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 253 276 79 63 chr13 87581185 87581312 -14291857 - MIR3 SINE MIR -78 130 2 2189 117 0 0 chr13 87581697 87581996 -14291173 - AluSg SINE Alu -11 299 1 247 248 200 14 chr13 87583607 87583752 -14289417 + MARNA DNA Mariner 280 451 -135 26 0 0 0 chr13 87583910 87583936 -14289233 + AT_rich Low_complexity Low_complexity 1 26 0 300 218 0 0 chr13 87584392 87584447 -14288722 + MIR SINE MIR 65 119 -143 602 276 83 13 chr13 87584475 87584703 -14288466 + MIR SINE MIR 7 250 -12 240 167 28 97 chr13 87584874 87584946 -14288223 + FLAM SINE Alu 67 133 0 403 296 63 13 chr13 87585527 87585686 -14287483 + MIR SINE MIR 46 212 -50 25 31 0 0 chr13 87587146 87587178 -14285991 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr13 87587528 87587563 -14285606 + AT_rich Low_complexity Low_complexity 1 35 0 545 251 0 32 chr13 87588324 87588511 -14284658 + L1MC5 LINE L1 7733 7913 -48 2162 114 19 0 chr13 87588897 87589204 -14283965 - AluSq SINE Alu 0 313 1 2227 118 0 0 chr13 87589525 87589821 -14283348 - AluSg SINE Alu -14 296 1 22 0 0 0 chr13 87589836 87589858 -14283311 + AT_rich Low_complexity Low_complexity 1 22 0 180 97 0 0 chr13 87590519 87590550 -14282619 + (T)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr13 87590722 87590752 -14282417 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr13 87591276 87591302 -14281867 + AT_rich Low_complexity Low_complexity 1 26 0 1254 142 54 15 chr13 87591592 87591884 -14281285 - MSTA LTR MaLR 0 428 93 1888 128 70 24 chr13 87591884 87592212 -14280957 - MER61A LTR ERV1 0 343 1 24751 81 33 21 chr13 87592212 87594046 -14279123 - MER61A-int LTR ERV1 0 5217 3406 2354 88 14 0 chr13 87594046 87594340 -14278829 - AluSc SINE Alu -7 302 5 24751 81 33 21 chr13 87594340 87594702 -14278467 - MER61A-int LTR ERV1 -1811 3406 3050 2176 88 10 36 chr13 87594702 87595008 -14278161 + AluSp SINE Alu 1 298 -15 24751 81 33 21 chr13 87595008 87596148 -14277021 - MER61A-int LTR ERV1 -2167 3050 1781 2099 131 0 3 chr13 87596148 87596446 -14276723 + AluSx SINE Alu 1 297 -15 24751 81 33 21 chr13 87596446 87596914 -14276255 - MER61A-int LTR ERV1 -3436 1781 1320 2326 166 20 62 chr13 87596953 87597599 -14275570 - MER61A-int LTR ERV1 -4517 700 1 1508 164 109 10 chr13 87597601 87597912 -14275257 - MER61A LTR ERV1 -1 342 1 534 165 0 10 chr13 87597912 87598009 -14275160 - MSTA LTR MaLR -330 96 1 2045 118 38 10 chr13 87598050 87598339 -14274830 - AluSx SINE Alu -15 297 1 2063 128 0 0 chr13 87598498 87598820 -14274349 - AluSc SINE Alu 0 322 1 467 206 100 47 chr13 87599246 87599416 -14273753 + L1MC4 LINE L1 6488 6666 -1376 296 150 238 0 chr13 87599425 87599505 -14273664 + L1MC4a LINE L1 7243 7341 -467 1418 128 28 5 chr13 87599505 87599716 -14273453 - AluSg/x SINE Alu -11 301 86 956 194 176 33 chr13 87599717 87599840 -14273329 + L1MC4 LINE L1 7413 7517 -525 1762 180 11 30 chr13 87599840 87600212 -14272957 - MLT1A1 LTR MaLR 0 365 1 956 194 176 33 chr13 87600212 87600424 -14272745 + L1MC4 LINE L1 7517 7796 -246 234 303 0 0 chr13 87600465 87600541 -14272628 - L1MC4 LINE L1 -246 7796 7721 455 204 0 0 chr13 87600630 87600728 -14272441 + L1MC4 LINE L1 7943 8040 -2 24 32 0 0 chr13 87601257 87601288 -14271881 + AT_rich Low_complexity Low_complexity 1 31 0 423 216 231 8 chr13 87601872 87602006 -14271163 - MIR SINE MIR -3 259 96 1573 180 7 14 chr13 87603411 87603700 -14269469 + AluJo SINE Alu 10 296 -16 2141 113 24 0 chr13 87604471 87604762 -14268407 - AluSx SINE Alu -14 298 1 276 30 0 0 chr13 87604793 87604826 -14268343 + (TG)n Simple_repeat Simple_repeat 2 34 0 2009 106 35 7 chr13 87604827 87605109 -14268060 - AluSg1 SINE Alu -19 290 1 2426 79 3 0 chr13 87605122 87605427 -14267742 - AluSp SINE Alu -7 306 1 240 333 60 30 chr13 87605739 87605907 -14267262 - L2 LINE L2 -588 2726 2554 202 345 139 5 chr13 87606358 87606552 -14266617 + L2 LINE L2 966 1185 -2129 2070 122 20 3 chr13 87606854 87607148 -14266021 + AluSg SINE Alu 12 310 0 232 268 86 81 chr13 87607225 87607423 -14265746 + L2 LINE L2 2853 3051 -221 2438 103 0 0 chr13 87607473 87607783 -14265386 + AluSx SINE Alu 1 310 -2 1693 167 13 33 chr13 87608574 87608873 -14264296 + AluJb SINE Alu 1 293 -19 1961 117 21 14 chr13 87609212 87609502 -14263667 + AluSx SINE Alu 5 296 -16 310 292 124 20 chr13 87609751 87609953 -14263216 - L1MDa LINE L1 -4547 1993 1771 2364 92 0 0 chr13 87609964 87610268 -14262901 - AluSx SINE Alu -8 304 1 553 128 20 0 chr13 87610302 87610404 -14262765 + CT-rich Low_complexity Low_complexity 2 105 0 1771 149 22 32 chr13 87610406 87610721 -14262448 - AluJo SINE Alu 0 312 1 23 0 0 0 chr13 87611147 87611170 -14261999 + AT_rich Low_complexity Low_complexity 1 23 0 1564 120 62 118 chr13 87612279 87612636 -14260533 - MER2 DNA MER2_type 0 345 9 22 35 0 0 chr13 87615081 87615110 -14258059 + AT_rich Low_complexity Low_complexity 1 29 0 1969 128 0 4 chr13 87615219 87615530 -14257639 + AluSx SINE Alu 3 312 0 689 244 67 10 chr13 87616153 87616346 -14256823 - MIR SINE MIR 0 262 59 1496 157 4 30 chr13 87616346 87616614 -14256555 - AluJb SINE Alu -11 301 41 309 333 30 24 chr13 87617180 87617348 -14255821 - MARNA DNA Mariner -102 484 316 284 275 156 9 chr13 87617450 87617559 -14255610 - MIR SINE MIR -133 129 5 678 233 105 6 chr13 87617626 87617798 -14255371 - MER5A DNA MER1_type 0 189 1 235 353 36 68 chr13 87617844 87618122 -14255047 - L2 LINE L2 -479 2835 2567 39 92 0 7 chr13 87618522 87618635 -14254534 + AT_rich Low_complexity Low_complexity 1 114 -26 2153 122 0 0 chr13 87618635 87618921 -14254248 - AluSx SINE Alu -26 286 1 39 92 0 7 chr13 87618921 87618948 -14254221 + AT_rich Low_complexity Low_complexity 114 140 0 2245 81 37 0 chr13 87619009 87619305 -14253864 + AluSp SINE Alu 1 307 -6 259 293 121 39 chr13 87619471 87619703 -14253466 - L1ME3A LINE L1 -228 5942 5692 613 239 96 29 chr13 87619874 87620083 -14253086 - MIR SINE MIR 0 262 40 583 206 60 51 chr13 87620100 87620337 -14252832 - L1ME3A LINE L1 -648 5514 5273 2403 83 0 0 chr13 87620610 87620910 -14252259 + AluY SINE Alu 12 311 0 296 121 0 34 chr13 87620922 87621203 -14251966 + AluSx SINE Alu 1 326 0 3119 133 36 28 chr13 87621838 87622370 -14250799 - L1MB3 LINE L1 -216 5967 5432 2910 149 175 20 chr13 87622778 87623390 -14249779 - MER39 LTR ERV1 0 707 1 1435 169 8 26 chr13 87624077 87624439 -14248730 - MSTB LTR MaLR 0 426 1 3108 125 55 145 chr13 87624634 87624776 -14248393 - MER51A LTR ERV1 0 634 481 2251 125 3 0 chr13 87624776 87625087 -14248082 + AluSq SINE Alu 1 312 -1 3108 125 55 145 chr13 87625087 87625641 -14247528 - MER51A LTR ERV1 -153 481 1 24 53 0 0 chr13 87626530 87626568 -14246601 + AT_rich Low_complexity Low_complexity 1 38 0 1966 134 24 3 chr13 87626690 87626982 -14246187 - AluSq SINE Alu -11 302 5 283 165 71 24 chr13 87626990 87627075 -14246094 - Charlie5 DNA MER1_type -31 2581 2493 273 226 0 0 chr13 87627075 87627128 -14246041 + LTR47A LTR ERVL 1 53 -399 1669 161 40 10 chr13 87627163 87627461 -14245708 - AluJb SINE Alu -4 308 2 1454 244 38 10 chr13 87627464 87627858 -14245311 + LTR47B LTR ERVL 39 443 0 227 211 0 0 chr13 87627858 87627915 -14245254 - Charlie5 DNA MER1_type -115 2497 2441 * 1130 191 115 0 chr13 87627908 87628143 -14245026 - Charlie5 DNA MER1_type -2343 269 8 25 0 0 0 chr13 87628527 87628552 -14244617 + AT_rich Low_complexity Low_complexity 1 25 0 257 0 30 0 chr13 87629173 87629206 -14243963 + (TA)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr13 87629535 87629565 -14243604 + AT_rich Low_complexity Low_complexity 1 30 0 2381 109 0 0 chr13 87630978 87631289 -14241880 - AluSx SINE Alu -1 311 1 189 0 0 0 chr13 87631291 87631312 -14241857 + (TTCC)n Simple_repeat Simple_repeat 3 23 0 508 285 248 16 chr13 87631581 87632158 -14241011 - L2 LINE L2 -26 3287 2579 331 225 38 12 chr13 87632161 87632241 -14240928 + Cheshire DNA MER1_type 41 122 -2298 1071 185 28 24 chr13 87632248 87632459 -14240710 + AluJo SINE Alu 85 296 -16 347 248 33 50 chr13 87632461 87632582 -14240587 + Cheshire DNA MER1_type 120 238 -2182 313 222 139 9 chr13 87632582 87632690 -14240479 + Cheshire DNA MER1_type 1375 1496 -924 224 298 87 29 chr13 87632706 87632810 -14240359 + MIR3 SINE MIR 93 202 -6 283 377 127 17 chr13 87632852 87633144 -14240025 + L2 LINE L2 2594 2917 -397 1713 84 4 13 chr13 87633198 87633423 -14239746 - AluSx SINE Alu -13 299 77 2603 62 3 0 chr13 87633427 87633734 -14239435 - AluY SINE Alu -1 310 3 637 149 0 0 chr13 87633734 87633821 -14239348 - AluSx SINE Alu -226 87 1 2143 152 91 15 chr13 87633916 87634312 -14238857 - MSTB1 LTR MaLR 0 432 7 3405 150 48 44 chr13 87634320 87635007 -14238162 - L1MA8 LINE L1 -42 6249 5560 1942 139 33 0 chr13 87635024 87635326 -14237843 - AluSx SINE Alu 0 312 1 2141 100 14 3 chr13 87636100 87636389 -14236780 + AluSq SINE Alu 1 292 -21 2008 112 66 3 chr13 87636404 87636690 -14236479 + AluSq SINE Alu 1 304 -9 2196 113 7 16 chr13 87637178 87637488 -14235681 - AluSg SINE Alu -3 307 1 24 32 0 0 chr13 87637669 87637700 -14235469 + AT_rich Low_complexity Low_complexity 1 31 0 1922 170 123 31 chr13 87637767 87638236 -14234933 - L1MB8 LINE L1 -1 6177 5676 302 307 49 49 chr13 87638311 87638474 -14234695 - L1MC/D LINE L1 -1975 5833 5671 1884 136 14 11 chr13 87638496 87638783 -14234386 - AluSx SINE Alu -24 288 1 287 196 38 75 chr13 87639072 87639100 -14234069 - L1P5 LINE L1 -694 5462 5435 2123 109 0 33 chr13 87639100 87639403 -14233766 + AluSg SINE Alu 1 293 -17 287 196 38 75 chr13 87639403 87639519 -14233650 - L1P5 LINE L1 -721 5435 5327 276 146 36 0 chr13 87639814 87639869 -14233300 - L1ME4a LINE L1 0 6121 6065 2165 161 39 43 chr13 87639893 87640309 -14232860 - MLT2D LTR ERVL 0 414 1 323 235 174 8 chr13 87640515 87640647 -14232522 + L2 LINE L2 2268 2421 -893 298 48 36 60 chr13 87640669 87640752 -14232417 + (TCTCC)n Simple_repeat Simple_repeat 1 81 0 721 17 51 51 chr13 87640765 87640941 -14232228 + (TCTCC)n Simple_repeat Simple_repeat 3 178 0 292 135 8 75 chr13 87640941 87641074 -14232095 + CT-rich Low_complexity Low_complexity 5 128 0 848 77 59 0 chr13 87641215 87641384 -14231785 + CT-rich Low_complexity Low_complexity 1 179 0 437 151 78 0 chr13 87641398 87641564 -14231605 + CT-rich Low_complexity Low_complexity 1 179 0 205 95 119 0 chr13 87641581 87641623 -14231546 + (TCTCTG)n Simple_repeat Simple_repeat 6 52 0 208 321 80 22 chr13 87641625 87641762 -14231407 + L2 LINE L2 2564 2708 -606 933 321 18 37 chr13 87641770 87642206 -14230963 + L2 LINE L2 2884 3311 -2 1517 141 83 29 chr13 87642271 87642548 -14230621 + AluJb SINE Alu 1 292 -20 1847 110 4 8 chr13 87642569 87642824 -14230345 + AluSq SINE Alu 1 254 -59 211 239 0 0 chr13 87642827 87642873 -14230296 + A-rich Low_complexity Low_complexity 1 46 0 329 327 69 38 chr13 87642889 87643048 -14230121 - MIR3 SINE MIR -33 175 12 188 33 0 33 chr13 87643202 87643232 -14229937 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2166 72 0 34 chr13 87643234 87643525 -14229644 - AluY SINE Alu -30 281 1 408 161 0 0 chr13 87644381 87644443 -14228726 + AluJ/FLAM SINE Alu 2 63 -249 341 269 21 55 chr13 87644450 87644595 -14228574 - L2 LINE L2 -143 3170 3031 371 303 146 8 chr13 87644777 87645031 -14228138 - L1ME3A LINE L1 -219 5951 5663 2178 133 0 0 chr13 87645051 87645351 -14227818 - AluSx SINE Alu -12 300 1 379 193 207 14 chr13 87645390 87645535 -14227634 - L1ME3A LINE L1 -795 5538 5366 3857 177 72 62 chr13 87645719 87646664 -14226505 - LTR13 LTR ERVK 0 954 1 1866 222 48 14 chr13 87646696 87647138 -14226031 - LTR40b LTR ERVL 0 462 6 675 106 154 10 chr13 87647545 87647649 -14225520 + FLAM_C SINE Alu 2 120 -23 844 101 0 74 chr13 87647649 87647838 -14225331 + (CA)n Simple_repeat Simple_repeat 1 175 0 911 217 0 0 chr13 87647840 87648001 -14225168 + FRAM SINE Alu 1 161 -5 1836 201 63 20 chr13 87648225 87648667 -14224502 - MLT1C LTR MaLR -1 466 6 233 261 109 11 chr13 87648879 87648971 -14224198 - MIR SINE MIR -114 148 48 1381 217 98 15 chr13 87649076 87649413 -14223756 - MLT1A2 LTR MaLR -9 365 1 23 78 0 0 chr13 87649941 87649992 -14223177 + AT_rich Low_complexity Low_complexity 1 51 0 221 246 119 63 chr13 87651683 87651809 -14221360 - L2 LINE L2 -4 3268 3136 216 0 0 0 chr13 87652688 87652712 -14220457 + (T)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr13 87653321 87653344 -14219825 + AT_rich Low_complexity Low_complexity 1 23 0 355 325 108 28 chr13 87653601 87653813 -14219356 + MIR SINE MIR 34 262 0 241 321 12 12 chr13 87654439 87654520 -14218649 - MER5A DNA MER1_type 0 189 109 833 179 73 0 chr13 87654954 87655105 -14218064 - MER20 DNA MER1_type -17 202 41 1721 100 0 0 chr13 87655992 87656235 -14216934 + AluSg/x SINE Alu 65 307 0 2216 97 3 0 chr13 87656732 87657021 -14216148 - AluY SINE Alu -20 291 2 6997 120 46 6 chr13 87657022 87658094 -14215075 - Tigger1 DNA MER2_type -629 1789 675 1141 82 0 0 chr13 87658095 87658230 -14214939 + AluSq/x SINE Alu 1 135 -178 2477 76 3 0 chr13 87658282 87658583 -14214586 + AluSp SINE Alu 1 302 -11 1995 110 3 14 chr13 87658849 87659165 -14214004 + AluSg SINE Alu 1 313 0 215 91 0 23 chr13 87660007 87660051 -14213118 + (TAAAAA)n Simple_repeat Simple_repeat 2 44 0 743 180 78 30 chr13 87660060 87660227 -14212942 + FAM SINE Alu 1 175 0 4146 133 30 26 chr13 87660227 87660906 -14212263 - Tigger1 DNA MER2_type -1737 681 1 2087 173 29 4 chr13 87661254 87661675 -14211494 - MER61D LTR ERV1 -6 495 15 1073 192 133 27 chr13 87661767 87662105 -14211064 - MER74B LTR ERVL 0 622 249 22 0 0 0 chr13 87662223 87662245 -14210924 + AT_rich Low_complexity Low_complexity 1 22 0 288 298 175 0 chr13 87662944 87663058 -14210111 + MIR3 SINE MIR 55 188 -20 24 0 0 0 chr13 87663501 87663525 -14209644 + AT_rich Low_complexity Low_complexity 1 24 0 390 69 0 0 chr13 87663793 87663851 -14209318 + (TC)n Simple_repeat Simple_repeat 1 58 0 1944 125 29 11 chr13 87663854 87664133 -14209036 - AluJb SINE Alu -28 284 1 311 219 68 0 chr13 87664211 87664284 -14208885 - L1MB8 LINE L1 0 6178 6101 301 172 0 0 chr13 87664315 87664373 -14208796 - MER53 DNA DNA -45 144 87 892 201 0 0 chr13 87664415 87664564 -14208605 - FRAM SINE Alu -17 149 1 3098 173 65 11 chr13 87664565 87665200 -14207969 - L1MB7 LINE L1 -68 6116 5448 521 272 41 0 chr13 87666465 87666634 -14206535 + MIR SINE MIR 72 247 -15 2304 182 41 2 chr13 87668689 87669107 -14204062 - Tigger2a DNA MER2_type 0 434 1 3654 175 72 13 chr13 87670241 87670629 -14202540 - MER44D DNA MER2_type -1882 605 285 1928 160 0 0 chr13 87670629 87670922 -14202247 + AluJb SINE Alu 2 294 -18 3654 175 72 13 chr13 87670922 87671225 -14201944 - MER44D DNA MER2_type -2202 285 1 21 57 0 0 chr13 87671342 87671377 -14201792 + AT_rich Low_complexity Low_complexity 1 35 0 978 127 24 18 chr13 87671929 87672094 -14201075 - AluSp SINE Alu 0 313 148 818 81 0 0 chr13 87672094 87672193 -14200976 + AluS SINE Alu 4 102 -210 204 224 0 20 chr13 87675172 87675221 -14197948 - MIR SINE MIR -140 122 75 517 287 16 29 chr13 87675695 87675939 -14197230 + L1ME4a LINE L1 5655 5895 -226 1791 172 0 30 chr13 87675983 87676285 -14196884 + AluJb SINE Alu 1 293 -19 571 175 80 7 chr13 87676849 87676986 -14196183 + MER103 DNA DNA 13 159 -7 1649 162 20 34 chr13 87677085 87677381 -14195788 - AluJo SINE Alu -20 292 1 21 0 0 0 chr13 87677388 87677409 -14195760 + AT_rich Low_complexity Low_complexity 1 21 0 2100 92 4 4 chr13 87677438 87677733 -14195436 - AluSp SINE Alu 0 308 14 1352 170 9 108 chr13 87677844 87678167 -14195002 + AluJo SINE Alu 1 291 -11 593 242 60 39 chr13 87678346 87678376 -14194793 + MER58A DNA MER1_type 39 67 -2353 2615 34 0 10 chr13 87678376 87678672 -14194497 + AluY SINE Alu 1 293 -18 593 242 60 39 chr13 87678672 87678823 -14194346 + MER58A DNA MER1_type 67 224 0 304 179 54 0 chr13 87679036 87679092 -14194077 - MER92C LTR ERV1 -2 552 494 487 248 33 0 chr13 87679202 87679323 -14193846 - MER92B LTR ERV1 -511 125 1 645 217 76 5 chr13 87679923 87680107 -14193062 - L1ME1 LINE L1 -4 6162 5966 212 270 45 11 chr13 87680125 87680214 -14192955 - MIR SINE MIR -62 200 109 735 256 6 0 chr13 87680275 87680455 -14192714 - MER5A DNA MER1_type -8 181 1 25 0 0 0 chr13 87681182 87681207 -14191962 + AT_rich Low_complexity Low_complexity 1 25 0 2425 76 0 0 chr13 87681494 87681784 -14191385 - AluY SINE Alu -19 292 3 2834 141 80 27 chr13 87681882 87682642 -14190527 + LTR1B LTR ERV1 1 826 0 2125 110 4 0 chr13 87683261 87683573 -14189596 + AluSc SINE Alu 1 313 0 2391 62 24 0 chr13 87683758 87684049 -14189120 + AluSp SINE Alu 1 298 -15 767 199 53 0 chr13 87684381 87684552 -14188617 + MER20 DNA MER1_type 3 182 -37 2054 202 48 115 chr13 87685184 87685317 -14187852 - L1MC3 LINE L1 0 8039 7899 213 39 0 0 chr13 87685317 87685343 -14187826 + (TC)n Simple_repeat Simple_repeat 2 27 0 2054 202 48 115 chr13 87685343 87686005 -14187164 - L1MC3 LINE L1 -140 7899 7309 334 376 6 6 chr13 87686112 87686277 -14186892 - L2 LINE L2 -204 3068 2904 31 0 0 0 chr13 87686811 87686842 -14186327 + AT_rich Low_complexity Low_complexity 1 31 0 1918 166 10 7 chr13 87687216 87687524 -14185645 - AluJo SINE Alu -3 309 1 21 0 0 75 chr13 87687592 87687632 -14185537 + AT_rich Low_complexity Low_complexity 1 37 0 820 143 25 66 chr13 87687846 87688042 -14185127 - L1MB5 LINE L1 -9 6165 5978 344 231 0 0 chr13 87688048 87688113 -14185056 - L1MB5 LINE L1 -278 5896 5832 21 36 0 0 chr13 87689701 87689729 -14183440 + AT_rich Low_complexity Low_complexity 1 28 0 2259 83 13 30 chr13 87690218 87690518 -14182651 + AluSg SINE Alu 1 295 -15 910 217 5 0 chr13 87690576 87690760 -14182409 - L1PB4 LINE L1 -3 6153 5969 626 184 81 40 chr13 87690880 87690948 -14182221 + MER5A DNA MER1_type 9 73 -116 2101 103 0 7 chr13 87690948 87691260 -14181909 + AluSg SINE Alu 1 310 0 626 184 81 40 chr13 87691260 87691364 -14181805 + MER5A DNA MER1_type 73 189 0 2437 64 3 17 chr13 87692565 87692862 -14180307 + AluSp SINE Alu 1 293 -20 1813 164 0 14 chr13 87692978 87693259 -14179910 + AluJb SINE Alu 1 277 -35 227 315 9 18 chr13 87693975 87694011 -14179158 - MIR SINE MIR -44 218 183 2208 96 7 10 chr13 87694011 87694304 -14178865 + AluSc SINE Alu 1 292 -17 227 315 9 18 chr13 87694304 87694378 -14178791 - MIR SINE MIR -79 183 109 1451 166 77 8 chr13 87694944 87695203 -14177966 + AluJb SINE Alu 6 282 -30 195 42 0 0 chr13 87695731 87695755 -14177414 + (CGGGGG)n Simple_repeat Simple_repeat 4 27 0 2271 107 0 3 chr13 87697004 87697312 -14175857 - AluSg SINE Alu -3 307 1 319 20 20 20 chr13 87699167 87699216 -14173953 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 227 30 0 30 chr13 87706092 87706125 -14167044 + (TG)n Simple_repeat Simple_repeat 2 33 0 396 0 0 0 chr13 87706402 87706446 -14166723 + (TG)n Simple_repeat Simple_repeat 2 45 0 2439 17 41 0 chr13 87709721 87710013 -14163156 + AluY SINE Alu 1 304 -7 26 0 0 0 chr13 87710134 87710160 -14163009 + AT_rich Low_complexity Low_complexity 1 26 0 342 0 0 0 chr13 87713730 87713768 -14159401 + (TG)n Simple_repeat Simple_repeat 2 39 0 1978 131 0 0 chr13 87713945 87714227 -14158942 + AluSx SINE Alu 1 282 -30 632 47 0 121 chr13 87714229 87714419 -14158750 + (TAGA)n Simple_repeat Simple_repeat 2 168 0 1208 158 85 12 chr13 87716464 87716710 -14156459 - L1MB8 LINE L1 0 6178 5915 471 266 113 0 chr13 87722110 87722234 -14150935 - MER58 DNA MER1_type -184 157 20 254 343 117 0 chr13 87724386 87724523 -14148646 - MIR3 SINE MIR -23 185 33 321 254 215 0 chr13 87724609 87724739 -14148430 - HAL1 LINE L1 -83 2424 2267 468 198 31 10 chr13 87724775 87724871 -14148298 + MIR SINE MIR 72 169 -93 577 250 36 26 chr13 87724975 87725167 -14148002 - HAL1 LINE L1 -300 2207 2014 1003 242 221 15 chr13 87725363 87726020 -14147149 - HAL1 LINE L1 -877 1630 839 279 259 67 15 chr13 87726110 87726245 -14146924 - HAL1 LINE L1 -1952 555 414 386 253 176 22 chr13 87727396 87727594 -14145575 - MIR SINE MIR -32 230 8 923 113 40 0 chr13 87727787 87727937 -14145232 - L1MB2 LINE L1 -7 6164 6009 5428 187 60 7 chr13 87727967 87729176 -14143993 - L1 LINE L1 -1364 4782 3510 1067 216 107 40 chr13 87729627 87730048 -14143121 - L1 LINE L1 -2624 3522 3074 247 322 11 11 chr13 87730668 87730755 -14142414 + MIR SINE MIR 45 131 -77 2367 78 3 0 chr13 87732550 87732856 -14140313 - AluSg SINE Alu -3 307 1 282 283 50 50 chr13 87734552 87734732 -14138437 - MIR SINE MIR -20 242 63 244 272 98 54 chr13 87734974 87735066 -14138103 + MER45B DNA AcHobo 85 180 -860 1142 226 154 24 chr13 87735140 87735430 -14137739 + MER45B DNA AcHobo 370 732 -308 2390 65 0 7 chr13 87735430 87735740 -14137429 + AluY SINE Alu 1 308 -3 1142 226 154 24 chr13 87735740 87735865 -14137304 + MER45B DNA AcHobo 732 839 -201 798 233 29 0 chr13 87735868 87736040 -14137129 + AluJb SINE Alu 124 300 -12 612 215 93 29 chr13 87736613 87736835 -14136334 + L1ME2 LINE L1 5936 6332 -2 1761 122 42 3 chr13 87738417 87738703 -14134466 + AluSq SINE Alu 1 297 -16 504 0 0 0 chr13 87739651 87739707 -14133462 + (CA)n Simple_repeat Simple_repeat 2 57 0 378 0 0 0 chr13 87739769 87739811 -14133358 + (CA)n Simple_repeat Simple_repeat 2 43 0 2431 64 0 0 chr13 87740354 87740651 -14132518 + AluY SINE Alu 1 297 -14 279 244 163 22 chr13 87741602 87741737 -14131432 - MIR SINE MIR -80 182 29 609 299 49 12 chr13 87742565 87742809 -14130360 + L1ME LINE L1 5570 5822 -348 1993 135 0 0 chr13 87742915 87743212 -14129957 + AluSg SINE Alu 1 297 -13 598 238 61 69 chr13 87743808 87744170 -14128999 + L1MC5 LINE L1 7540 7898 -63 4558 226 55 44 chr13 87744193 87744594 -14128575 + L1ME LINE L1 3275 3670 -2476 1732 148 0 48 chr13 87744594 87744905 -14128264 + AluJo SINE Alu 1 296 -16 680 188 23 0 chr13 87744906 87745034 -14128135 + FLAM_C SINE Alu 3 133 0 4558 226 55 44 chr13 87745034 87745987 -14127182 + L1ME LINE L1 3670 4611 -1535 1276 69 0 11 chr13 87745987 87746161 -14127008 + L1MA1 LINE L1 6131 6302 0 4558 226 55 44 chr13 87746161 87746229 -14126940 + L1ME LINE L1 4611 4677 -1469 1797 128 3 58 chr13 87746229 87746542 -14126627 - AluSx SINE Alu -16 296 1 4558 226 55 44 chr13 87746542 87746634 -14126535 + L1ME LINE L1 4677 4810 -1336 547 183 65 14 chr13 87746634 87746783 -14126386 + L1MB7 LINE L1 6032 6178 0 * 1512 191 158 15 chr13 87746781 87747248 -14125921 + L1ME LINE L1 4797 5330 -816 2157 90 13 7 chr13 87747253 87747553 -14125616 + AluSp SINE Alu 1 302 -11 591 161 34 17 chr13 87747573 87747691 -14125478 + FLAM_C SINE Alu 23 142 -1 961 172 83 20 chr13 87747691 87747895 -14125274 + L1ME LINE L1 5320 5536 -630 474 289 25 40 chr13 87748022 87748080 -14125089 - MIR SINE MIR -55 207 150 1938 130 52 6 chr13 87748080 87748425 -14124744 + MER46B DNA MER2_type 1 236 0 474 289 25 40 chr13 87748425 87748567 -14124602 - MIR SINE MIR -112 150 10 1647 167 20 10 chr13 87749437 87749736 -14123433 + AluSx SINE Alu 1 302 -10 11721 182 27 17 chr13 87750162 87752803 -14120366 + L1M1 LINE L1 3395 6076 -1489 467 213 0 0 chr13 87752994 87753088 -14120081 + MER92B LTR ERV1 543 636 0 25 0 0 0 chr13 87753270 87753295 -14119874 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr13 87753734 87753762 -14119407 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 87753926 87753956 -14119213 + AT_rich Low_complexity Low_complexity 1 30 0 1799 112 0 127 chr13 87754351 87754690 -14118479 - AluSx SINE Alu -6 296 1 2236 58 65 3 chr13 87755439 87755730 -14117439 - AluY SINE Alu 0 311 3 394 282 55 0 chr13 87755911 87756021 -14117148 + MIR SINE MIR 11 126 -136 2337 82 0 16 chr13 87756527 87756830 -14116339 + AluSc SINE Alu 1 298 -11 1343 140 18 0 chr13 87756830 87757052 -14116117 - Tigger1 DNA MER2_type -2192 226 1 2127 137 0 3 chr13 87757124 87757474 -14115695 - AluSx SINE Alu 0 349 1 328 235 51 31 chr13 87757546 87757644 -14115525 + MIR SINE MIR 97 196 -66 2286 107 0 3 chr13 87757736 87758035 -14115134 - AluSg SINE Alu -12 298 1 2549 63 0 0 chr13 87758617 87758920 -14114249 - AluY SINE Alu -6 305 3 546 276 54 87 chr13 87759308 87759754 -14113415 - MLT1J1 LTR MaLR 0 446 16 617 176 92 142 chr13 87759817 87760078 -14113091 - HsTC2 DNA Tc2 -32 1866 1619 5163 60 68 5 chr13 87760080 87760741 -14112428 - L1PA7 LINE L1 0 6154 5452 348 178 2 0 chr13 87760756 87760826 -14112343 + Alu SINE Alu 224 283 -17 8096 136 49 29 chr13 87760980 87761774 -14111395 + Tigger2 DNA MER2_type 277 1054 -1664 1892 160 7 0 chr13 87761774 87762067 -14111102 + AluSx SINE Alu 3 297 -15 8096 136 49 29 chr13 87762067 87762150 -14111019 + Tigger2 DNA MER2_type 1054 1134 -1584 2371 67 0 7 chr13 87762150 87762448 -14110721 + AluY SINE Alu 1 296 -15 8096 136 49 29 chr13 87762448 87762949 -14110220 + Tigger2 DNA MER2_type 1134 1683 -1035 1613 234 44 0 chr13 87763051 87763436 -14109733 - L1M4 LINE L1 -1943 4203 3802 501 167 0 0 chr13 87763458 87763530 -14109639 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1486 203 103 32 chr13 87764972 87765342 -14107827 - MLT1D LTR MaLR -2 503 108 1801 156 0 48 chr13 87765346 87765660 -14107509 + AluSx SINE Alu 1 299 -13 212 315 18 45 chr13 87765697 87765808 -14107361 - L2 LINE L2 -218 3095 2988 2380 98 0 0 chr13 87765857 87766152 -14107017 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr13 87766448 87766469 -14106700 + AT_rich Low_complexity Low_complexity 1 21 0 205 215 31 31 chr13 87766813 87766878 -14106291 + (TCTA)n Simple_repeat Simple_repeat 3 67 0 209 274 20 0 chr13 87767015 87767066 -14106103 + GA-rich Low_complexity Low_complexity 5 56 0 944 197 73 19 chr13 87767093 87767369 -14105800 + L1MC5 LINE L1 6959 7247 -728 226 255 71 31 chr13 87767409 87767507 -14105662 + L1MC4a LINE L1 7266 7367 -441 * 1762 186 36 91 chr13 87767485 87768125 -14105044 + L1MC5 LINE L1 7256 7860 -101 2192 156 12 6 chr13 87768134 87768480 -14104689 - MER7A DNA MER2_type 0 346 1 1906 136 7 14 chr13 87768534 87768829 -14104340 + AluSx SINE Alu 4 296 -16 2059 112 7 0 chr13 87769845 87770130 -14103039 - AluSx SINE Alu -25 287 1 2244 95 3 10 chr13 87770136 87770440 -14102729 - AluSx SINE Alu -10 302 1 338 39 19 39 chr13 87771593 87771645 -14101524 - L1MB8 LINE L1 -2 6176 6126 1028 209 40 39 chr13 87772676 87773079 -14100090 - L1ME1 LINE L1 -1 6165 5717 410 183 0 0 chr13 87773207 87773294 -14099875 + AluS SINE Alu 222 308 0 419 257 103 43 chr13 87773300 87773746 -14099423 + L1MC/D LINE L1 5013 5479 -747 28 71 0 0 chr13 87773796 87773852 -14099317 + AT_rich Low_complexity Low_complexity 1 56 0 2147 126 3 0 chr13 87773863 87774156 -14099013 - AluSq SINE Alu -19 294 1 400 319 22 30 chr13 87774175 87774407 -14098762 + L1MC/D LINE L1 5526 5755 -2053 223 303 0 15 chr13 87774857 87774923 -14098246 - L2 LINE L2 0 3313 3249 186 286 157 0 chr13 87775187 87775257 -14097912 - MIR SINE MIR -14 248 168 304 326 53 44 chr13 87775804 87776031 -14097138 + L1MEd LINE L1 445 673 -5446 561 167 0 39 chr13 87776307 87776409 -14096760 + U6 snRNA snRNA 10 107 0 1166 266 66 70 chr13 87776462 87777239 -14095930 + HAL1 LINE L1 991 1764 -743 2492 104 18 47 chr13 87777580 87777966 -14095203 - THE1C LTR MaLR 0 375 1 10859 107 31 43 chr13 87777968 87779565 -14093604 - THE1C-int LTR MaLR -2 1578 1 2665 103 27 11 chr13 87779565 87779934 -14093235 - THE1C LTR MaLR 0 375 1 386 111 16 16 chr13 87780021 87780084 -14093085 + THE1C LTR MaLR 254 316 -59 788 156 55 0 chr13 87780853 87780981 -14092188 - AluJo SINE Alu -176 136 2 336 295 36 54 chr13 87780983 87781149 -14092020 + MIR SINE MIR 21 183 -79 388 298 52 40 chr13 87781447 87781699 -14091470 + L1PA16 LINE L1 5671 5925 -241 * 2665 131 7 21 chr13 87781485 87781914 -14091255 + L1MB2 LINE L1 5721 6143 -28 1138 147 18 0 chr13 87781930 87782100 -14091069 - FAM SINE Alu -1 174 2 812 183 0 0 chr13 87782886 87783023 -14090146 - FLAM_C SINE Alu -6 137 1 4967 115 81 12 chr13 87783050 87783661 -14089508 + L1PA16 LINE L1 5277 5959 -207 2157 120 0 10 chr13 87783661 87783961 -14089208 + AluSx SINE Alu 1 297 -15 4967 115 81 12 chr13 87783961 87784185 -14088984 + L1PA16 LINE L1 5959 6166 0 1280 164 9 5 chr13 87784935 87785148 -14088021 + AluJo SINE Alu 83 296 -16 1883 235 91 54 chr13 87785618 87786286 -14086883 + L1ME1 LINE L1 5448 6140 -26 338 257 156 13 chr13 87786407 87786506 -14086663 + L1MC5 LINE L1 7505 7588 -373 2241 106 7 0 chr13 87786506 87786841 -14086328 + AluSq SINE Alu 1 313 0 338 257 156 13 chr13 87786841 87786978 -14086191 + L1MC5 LINE L1 7588 7775 -186 231 263 0 0 chr13 87787161 87787241 -14085928 + GA-rich Low_complexity Low_complexity 4 83 0 188 336 134 17 chr13 87788473 87788592 -14084577 - L2 LINE L2 -21 3251 3119 2776 151 90 26 chr13 87788687 87789290 -14083879 + MER39 LTR ERV1 67 707 0 1158 233 155 18 chr13 87789547 87789985 -14083184 + MLT1D LTR MaLR 8 505 0 3191 204 57 29 chr13 87790205 87790976 -14082193 + L1MC3 LINE L1 6305 7097 -688 243 296 35 52 chr13 87790976 87791091 -14082078 + MLT1F1 LTR MaLR 35 147 -420 817 199 7 0 chr13 87791091 87791242 -14081927 + L1MC3 LINE L1 7213 7364 -421 695 194 13 45 chr13 87791449 87791604 -14081565 + L1MC5 LINE L1 6633 6782 -1179 1702 175 46 26 chr13 87791749 87792097 -14081072 + MLT1D LTR MaLR 1 355 -150 430 244 0 0 chr13 87792131 87792221 -14080948 - MIR SINE MIR -166 96 7 339 238 12 0 chr13 87792399 87792483 -14080686 - L1MC5 LINE L1 -60 7901 7817 842 180 6 56 chr13 87792903 87793064 -14080105 - AluJb SINE Alu -24 288 136 1546 252 88 48 chr13 87793522 87794042 -14079127 + L1ME3A LINE L1 5506 6057 -113 2409 86 0 0 chr13 87794042 87794334 -14078835 - AluSg SINE Alu -18 292 1 1546 252 88 48 chr13 87794334 87794452 -14078717 + L1ME3A LINE L1 6057 6169 -1 183 234 47 140 chr13 87795197 87795304 -14077865 - MIR SINE MIR -8 254 158 270 250 0 0 chr13 87795362 87795434 -14077735 + A-rich Low_complexity Low_complexity 1 72 0 335 359 122 23 chr13 87795691 87796045 -14077124 + L1ME4a LINE L1 4638 5026 -1120 588 281 138 0 chr13 87796223 87796426 -14076743 - MIR SINE MIR -21 241 11 582 290 144 43 chr13 87796470 87797008 -14076161 + L1ME4a LINE L1 5272 5855 -266 240 254 315 22 chr13 87797122 87797303 -14075866 + MIR SINE MIR 15 248 -14 192 77 0 0 chr13 87798356 87798382 -14074787 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 1933 139 0 17 chr13 87798426 87798728 -14074441 + AluSx SINE Alu 13 309 -3 1386 204 4 22 chr13 87798786 87799055 -14074114 + AluJo SINE Alu 1 264 -48 2273 93 0 0 chr13 87801026 87801316 -14071853 + AluSg SINE Alu 3 292 -18 438 273 141 99 chr13 87801748 87802581 -14070588 + L1M2 LINE L1 526 1309 -5540 2772 20 3 0 chr13 87803099 87803405 -14069764 - AluYa5 SINE Alu -4 307 1 1720 184 0 7 chr13 87803579 87803878 -14069291 - AluJb SINE Alu -15 297 1 449 216 103 103 chr13 87803996 87804181 -14068988 + MER5A DNA MER1_type 2 186 -3 264 243 243 39 chr13 87804202 87804305 -14068864 - MER5A DNA MER1_type 0 189 66 2281 136 126 26 chr13 87804699 87805088 -14068081 - MSTA LTR MaLR 0 428 1 910 218 234 0 chr13 87805540 87805797 -14067372 + MER58B DNA MER1_type 20 336 -5 333 309 86 12 chr13 87806833 87806995 -14066174 - MIR SINE MIR -70 192 19 2174 224 93 5 chr13 87807225 87807840 -14065329 - LTR65 LTR ERV1 0 669 1 832 214 17 17 chr13 87808134 87808312 -14064857 + LTR28 LTR ERV1 1 178 -842 1370 213 30 14 chr13 87808338 87808653 -14064516 + LTR27 LTR ERV1 119 580 -56 1638 151 60 8 chr13 87809280 87809545 -14063624 + AluJo SINE Alu 3 281 -31 22 0 0 0 chr13 87809554 87809576 -14063593 + AT_rich Low_complexity Low_complexity 1 22 0 386 306 68 0 chr13 87809637 87809784 -14063385 - MIR SINE MIR -13 249 93 1022 198 70 22 chr13 87809784 87810011 -14063158 - MLT1C LTR MaLR -2 465 228 942 238 154 13 chr13 87810526 87810905 -14062264 + MLT1G1 LTR MaLR 1 518 -77 382 99 0 84 chr13 87810923 87810994 -14062175 - MLT2D LTR ERVL -349 65 1 2174 116 0 3 chr13 87810994 87811288 -14061881 + AluSx SINE Alu 1 293 -19 319 235 0 59 chr13 87811481 87811583 -14061586 - MER5A DNA MER1_type -83 106 11 1059 188 58 5 chr13 87811605 87811813 -14061356 + MER20 DNA MER1_type 1 219 0 1155 155 69 35 chr13 87812058 87812290 -14060879 + AluJo SINE Alu 68 307 -5 2352 101 3 0 chr13 87812933 87813241 -14059928 - AluSp SINE Alu -4 309 1 222 255 133 0 chr13 87814804 87814902 -14058267 + MIR SINE MIR 56 166 -96 2554 62 7 0 chr13 87815553 87815857 -14057312 - AluY SINE Alu -5 306 1 2384 79 3 0 chr13 87816276 87816566 -14056603 - AluSg SINE Alu -19 291 1 766 204 13 85 chr13 87817241 87817476 -14055693 - MER20 DNA MER1_type -1 218 1 204 40 0 0 chr13 87817870 87817895 -14055274 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 200 217 22 0 chr13 87818413 87818459 -14054710 - L2 LINE L2 -8 3305 3259 351 0 0 0 chr13 87818877 87818916 -14054253 + (CA)n Simple_repeat Simple_repeat 1 39 0 338 125 0 0 chr13 87818916 87818964 -14054205 + (TC)n Simple_repeat Simple_repeat 1 48 0 204 208 0 38 chr13 87819160 87819213 -14053956 + MIR SINE MIR 104 154 -108 16545 45 28 1 chr13 87820022 87822240 -14050929 + L1P LINE L1 2986 5263 -883 248 170 0 0 chr13 87822345 87822398 -14050771 - MER63 DNA MER1_type -820 110 58 456 197 44 73 chr13 87822398 87822432 -14050737 - MER97b DNA MER1_type? -920 133 100 7033 54 17 0 chr13 87822432 87823722 -14049447 - L1PA6 LINE L1 -5 6149 4858 2208 103 0 0 chr13 87823722 87824004 -14049165 - AluSx SINE Alu -30 282 1 456 197 44 73 chr13 87824004 87824105 -14049064 - MER97b DNA MER1_type? -951 102 1 384 296 46 107 chr13 87824105 87824353 -14048816 + L2 LINE L2 2751 2952 -320 2035 121 18 38 chr13 87824353 87824693 -14048476 + MER1B DNA MER1_type 2 334 -3 384 296 46 107 chr13 87824693 87824971 -14048198 + L2 LINE L2 2952 3245 -27 315 210 57 105 chr13 87825379 87825425 -14047744 - MIR SINE MIR -44 218 171 2105 117 0 41 chr13 87825425 87825741 -14047428 + AluSx SINE Alu 1 303 -9 315 210 57 105 chr13 87825741 87825818 -14047351 - MIR SINE MIR -91 171 101 211 279 0 0 chr13 87826147 87826208 -14046961 - MER91 DNA MER1_type -79 61 1 536 303 136 27 chr13 87826602 87826978 -14046191 - MLT1J2 LTR MaLR -8 442 26 408 239 31 116 chr13 87827969 87828101 -14045068 - MIR SINE MIR 0 262 161 2426 75 0 0 chr13 87828101 87828395 -14044774 - AluY SINE Alu -17 294 1 408 239 31 116 chr13 87828395 87828521 -14044648 - MIR SINE MIR -101 161 26 210 118 0 0 chr13 87828829 87828863 -14044306 + (T)n Simple_repeat Simple_repeat 1 34 0 279 322 74 47 chr13 87828866 87829015 -14044154 + L2 LINE L2 2939 3091 -181 439 273 187 0 chr13 87829234 87829421 -14043748 + L3 LINE CR1 1191 1412 -165 6224 61 16 41 chr13 87829449 87829999 -14043170 + L1PB1 LINE L1 5278 5841 -310 2330 106 3 0 chr13 87829999 87830311 -14042858 + AluSp SINE Alu 1 313 0 6224 61 16 41 chr13 87830311 87830458 -14042711 + L1PB1 LINE L1 5841 5990 -161 2010 134 0 3 chr13 87830458 87830762 -14042407 + AluSx SINE Alu 1 303 0 6224 61 16 41 chr13 87830762 87830959 -14042210 + L1PB1 LINE L1 5990 6151 0 1090 235 44 71 chr13 87831114 87831523 -14041646 - LTR37B LTR ERV1 0 468 71 1252 151 88 141 chr13 87831524 87831711 -14041458 - MLT1C LTR MaLR -1 466 271 2457 106 119 10 chr13 87831711 87832097 -14041072 + MSTA LTR MaLR 1 428 0 1252 151 88 141 chr13 87832097 87832322 -14040847 - MLT1C LTR MaLR -196 271 9 239 230 27 27 chr13 87832327 87832401 -14040768 - LTR37B LTR ERV1 -389 79 6 2188 121 10 0 chr13 87832937 87833243 -14039926 - AluSg SINE Alu -1 309 1 432 67 0 0 chr13 87833578 87833638 -14039531 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 1558 184 98 78 chr13 87833638 87834143 -14039026 - MER66A LTR ERV1 0 478 97 2325 161 0 0 chr13 87834175 87834528 -14038641 - MER66A-int LTR ERV1 0 6676 6324 1059 160 17 22 chr13 87834606 87834787 -14038382 - MER66-int LTR ERV1 -1848 4828 4649 10362 117 13 47 chr13 87834787 87835347 -14037822 + THE1C-int LTR MaLR 2 580 -1000 1054 69 0 0 chr13 87835347 87835478 -14037691 - L1PA7 LINE L1 -13 6141 6011 10362 117 13 47 chr13 87835478 87836552 -14036617 + THE1C-int LTR MaLR 580 1580 0 1200 179 79 45 chr13 87836553 87836844 -14036325 + THE1C LTR MaLR 2 302 -73 315 272 44 11 chr13 87837017 87837124 -14036045 - MER4D LTR ERV1 -712 160 50 2419 233 133 102 chr13 87837124 87837277 -14035892 - MER66-int LTR ERV1 -2224 4452 4305 2546 114 3 22 chr13 87837277 87837434 -14035735 + THE1B LTR MaLR 4 162 -202 2182 105 0 3 chr13 87837434 87837720 -14035449 - AluSc SINE Alu -9 300 16 2546 114 3 22 chr13 87837720 87837930 -14035239 + THE1B LTR MaLR 162 364 0 2419 233 133 102 chr13 87837930 87839183 -14033986 - MER66-int LTR ERV1 -2371 4305 3002 2435 92 0 0 chr13 87839186 87839489 -14033680 + AluSq SINE Alu 1 303 -10 354 288 0 38 chr13 87839557 87839689 -14033480 - L1MC5 LINE L1 -742 7219 7093 1266 171 84 39 chr13 87839927 87840237 -14032932 - MER33 DNA MER1_type 0 324 1 2026 105 68 7 chr13 87840302 87840596 -14032573 - AluSx SINE Alu 0 312 1 308 307 89 37 chr13 87840794 87841143 -14032026 + L2 LINE L2 2379 2745 -569 193 186 85 0 chr13 87841232 87841291 -14031878 + L2 LINE L2 2898 2961 -311 661 223 114 31 chr13 87841298 87841491 -14031678 - MER20 DNA MER1_type -5 214 6 378 268 169 24 chr13 87841543 87841756 -14031413 + L2 LINE L2 3026 3269 -3 197 296 111 22 chr13 87841863 87841998 -14031171 - MIR SINE MIR -93 169 23 * 214 319 143 18 chr13 87841997 87842099 -14031070 + L3 LINE CR1 569 657 -920 1910 165 7 0 chr13 87842099 87842402 -14030767 + AluJb SINE Alu 1 305 -7 214 319 143 18 chr13 87842402 87842572 -14030597 + L3 LINE CR1 657 875 -702 2376 100 0 0 chr13 87843327 87843626 -14029543 + AluSx SINE Alu 1 299 -13 236 119 143 0 chr13 87845072 87845114 -14028055 + MLT1G1 LTR MaLR 515 562 -33 2332 100 0 0 chr13 87845132 87845432 -14027737 - AluSx SINE Alu -6 306 7 235 241 19 0 chr13 87845832 87845886 -14027283 + CT-rich Low_complexity Low_complexity 1 55 0 276 200 83 42 chr13 87845886 87846006 -14027163 - L1MC5 LINE L1 -167 7794 7670 2387 100 3 0 chr13 87846234 87846535 -14026634 + AluSx SINE Alu 1 302 -10 354 288 0 38 chr13 87846603 87846735 -14026434 - L1MC5 LINE L1 -742 7219 7093 1266 171 84 39 chr13 87846973 87847283 -14025886 - MER33 DNA MER1_type 0 324 1 2026 105 68 7 chr13 87847348 87847642 -14025527 - AluSx SINE Alu 0 312 1 308 307 89 37 chr13 87847840 87848189 -14024980 + L2 LINE L2 2379 2745 -569 193 186 85 0 chr13 87848278 87848337 -14024832 + L2 LINE L2 2898 2961 -311 661 223 114 31 chr13 87848344 87848537 -14024632 - MER20 DNA MER1_type -5 214 6 378 268 169 24 chr13 87848589 87848802 -14024367 + L2 LINE L2 3026 3269 -3 197 296 111 22 chr13 87848909 87849044 -14024125 - MIR SINE MIR -93 169 23 2106 142 7 0 chr13 87849145 87849455 -14023714 + AluJb SINE Alu 1 312 0 211 285 100 31 chr13 87849491 87849621 -14023548 + L3 LINE CR1 737 875 -702 2376 100 0 0 chr13 87850376 87850675 -14022494 + AluSx SINE Alu 1 299 -13 2331 108 0 0 chr13 87854289 87854586 -14018583 + AluSx SINE Alu 2 298 -14 591 243 93 37 chr13 87856136 87856350 -14016819 - MER113 DNA MER1_type? -86 435 210 228 163 0 0 chr13 87856736 87856779 -14016390 + (CA)n Simple_repeat Simple_repeat 2 44 0 343 200 15 0 chr13 87856843 87856908 -14016261 - MIR SINE MIR -99 163 98 2409 65 0 0 chr13 87858359 87858668 -14014501 + AluY SINE Alu 1 309 -2 295 328 40 32 chr13 87858671 87858796 -14014373 + MER5A DNA MER1_type 61 186 -3 360 0 0 0 chr13 87859710 87859750 -14013419 + (CA)n Simple_repeat Simple_repeat 2 41 0 1966 174 82 0 chr13 87860025 87860404 -14012765 - L1MA4 LINE L1 -6 6294 5885 381 135 0 27 chr13 87860804 87860878 -14012291 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 196 279 29 10 chr13 87860947 87861051 -14012118 + CT-rich Low_complexity Low_complexity 1 106 0 294 250 106 30 chr13 87861234 87861366 -14011803 + LTR16A1 LTR ERVL 316 457 0 2184 87 10 0 chr13 87861597 87861897 -14011272 - AluSp SINE Alu -10 303 1 183 80 0 0 chr13 87862256 87862281 -14010888 + (A)n Simple_repeat Simple_repeat 1 25 0 680 168 77 13 chr13 87862330 87862485 -14010684 - MIR SINE MIR -46 216 52 2045 112 0 16 chr13 87862886 87863198 -14009971 - AluSg SINE Alu -2 308 2 1771 136 0 53 chr13 87863209 87863511 -14009658 - AluSx SINE Alu -26 286 1 5978 214 10 17 chr13 87863511 87863965 -14009204 - L1PA16 LINE L1 -10 6156 5701 2152 105 0 0 chr13 87863965 87864259 -14008910 - AluSg1 SINE Alu -15 294 1 5978 214 10 17 chr13 87864259 87864886 -14008283 - L1PA16 LINE L1 -465 5701 5071 1608 166 3 42 chr13 87864886 87865194 -14007975 - AluJb SINE Alu -16 296 1 5978 214 10 17 chr13 87865194 87866203 -14006966 - L1PA16 LINE L1 -1095 5071 4045 6244 39 0 8 chr13 87866250 87867001 -14006168 - SVA Other Other -3 1383 639 423 0 0 0 chr13 87867087 87867134 -14006035 + (CA)n Simple_repeat Simple_repeat 2 48 0 315 214 137 34 chr13 87867903 87868020 -14005149 + LTR50 LTR ERVL 28 156 -639 389 225 67 17 chr13 87868254 87868374 -14004795 + LTR33A LTR ERVL 378 503 -20 243 0 0 0 chr13 87868587 87868614 -14004555 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2435 69 0 0 chr13 87869177 87869483 -14003686 - AluY SINE Alu -5 306 1 2200 144 30 25 chr13 87870140 87870502 -14002667 + THE1B LTR MaLR 1 364 0 558 28 0 0 chr13 87870539 87870610 -14002559 - L1PA3 LINE L1 -4 6151 6081 1941 139 0 0 chr13 87871002 87871289 -14001880 - AluSx SINE Alu -23 289 3 180 0 0 0 chr13 87871405 87871425 -14001744 + (T)n Simple_repeat Simple_repeat 1 20 0 2290 73 0 49 chr13 87871803 87872130 -14001039 + AluY SINE Alu 1 311 0 266 0 29 0 chr13 87872330 87872364 -14000805 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1087 183 0 0 chr13 87874208 87874383 -13998786 - FAM SINE Alu 0 175 1 1665 168 41 16 chr13 87874586 87874902 -13998267 + MLT1A1 LTR MaLR 12 335 -30 1476 194 82 51 chr13 87875076 87875529 -13997640 - MLT1C LTR MaLR 0 467 1 1460 171 65 2 chr13 87875902 87876327 -13996842 - L1MB3 LINE L1 -103 6080 5580 247 188 0 0 chr13 87876321 87876369 -13996800 + L1MB5 LINE L1 6127 6174 0 * 2024 120 3 7 chr13 87876627 87876926 -13996243 + AluSc SINE Alu 1 298 -11 1784 124 12 0 chr13 87876926 87877183 -13995986 - MER66A-int LTR ERV1 -4084 2592 2333 * 8880 175 89 28 chr13 87877169 87879078 -13994091 - MER66A-int LTR ERV1 -4508 2168 53 290 222 11 131 chr13 87879134 87879310 -13993859 - MER66A-int LTR ERV1 -6521 155 1 1344 154 144 77 chr13 87879310 87879720 -13993449 - MER66A LTR ERV1 0 478 98 1964 59 8 0 chr13 87880444 87880697 -13992472 + L1P LINE L1 1 255 -5891 2358 64 10 13 chr13 87880871 87881182 -13991987 + AluSg SINE Alu 1 310 0 445 288 75 41 chr13 87881182 87881379 -13991790 - MIR SINE MIR -6 256 47 1828 146 46 49 chr13 87881432 87881699 -13991470 - MER7A DNA MER2_type -2692 346 81 2096 112 7 0 chr13 87881699 87881995 -13991174 + AluSq SINE Alu 1 298 -15 1828 146 46 49 chr13 87881995 87882076 -13991093 - MER7A DNA MER2_type -2957 81 1 1091 221 82 3 chr13 87885168 87885462 -13987707 + MER33 DNA MER1_type 4 320 -4 1775 143 3 33 chr13 87885638 87885939 -13987230 - AluJb SINE Alu -20 292 1 266 213 0 0 chr13 87886464 87886511 -13986658 + L2 LINE L2 3267 3313 0 315 0 0 0 chr13 87886713 87886748 -13986421 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 225 0 0 0 chr13 87888447 87888472 -13984697 + (A)n Simple_repeat Simple_repeat 1 25 0 897 118 0 0 chr13 87889009 87889144 -13984025 + AluSp/q SINE Alu 177 311 -2 2109 113 3 0 chr13 87889149 87889449 -13983720 + AluSx SINE Alu 2 302 -10 278 248 33 91 chr13 87889790 87889911 -13983258 + L2 LINE L2 3198 3311 -2 23 33 0 0 chr13 87891526 87891556 -13981613 + AT_rich Low_complexity Low_complexity 1 30 0 2352 82 0 3 chr13 87891967 87892273 -13980896 - AluSx SINE Alu -7 305 1 1983 136 0 3 chr13 87893491 87893792 -13979377 - AluJb SINE Alu -12 300 1 1059 152 0 0 chr13 87896211 87896382 -13976787 - FRAM SINE Alu -7 169 1 338 290 37 0 chr13 87896768 87896875 -13976294 - MER81 DNA DNA -3 111 1 2127 135 0 0 chr13 87896998 87897310 -13975859 + AluSx SINE Alu 1 312 0 2000 122 7 0 chr13 87897606 87897902 -13975267 - AluSx SINE Alu -14 298 1 242 216 0 0 chr13 87898214 87898265 -13974904 + (TG)n Simple_repeat Simple_repeat 2 52 0 197 380 74 0 chr13 87899464 87899572 -13973597 + MIR3 SINE MIR 43 158 -50 345 179 45 0 chr13 87901114 87901181 -13971988 - U6 snRNA snRNA 0 107 38 424 267 67 7 chr13 87902473 87902623 -13970546 - LTR67 LTR ERVL -2 555 397 234 219 356 12 chr13 87902670 87902830 -13970339 - LTR67 LTR ERVL -342 215 1 1487 181 18 7 chr13 87903821 87904097 -13969072 + AluJo SINE Alu 2 280 -32 1911 127 20 3 chr13 87904261 87904560 -13968609 + AluSx SINE Alu 1 304 -8 211 277 96 53 chr13 87906030 87906124 -13967045 + MER5A DNA MER1_type 8 105 -84 542 268 147 5 chr13 87906946 87907136 -13966033 + MIR SINE MIR 46 262 0 183 242 61 30 chr13 87907552 87907618 -13965551 + L2 LINE L2 3197 3264 -8 1701 150 0 17 chr13 87907775 87908075 -13965094 + AluJo SINE Alu 1 295 -17 669 210 8 0 chr13 87908285 87908404 -13964765 - FLAM_A SINE Alu -12 121 2 425 331 133 0 chr13 87909036 87909217 -13963952 + MIR SINE MIR 2 206 -56 263 214 155 12 chr13 87909337 87909421 -13963748 - MER91A DNA MER1_type -1 195 100 1673 176 3 3 chr13 87909611 87909900 -13963269 - AluJo SINE Alu -23 289 1 27 49 0 0 chr13 87911272 87911313 -13961856 + GC_rich Low_complexity Low_complexity 1 41 0 25 110 0 0 chr13 87911423 87911532 -13961637 + GC_rich Low_complexity Low_complexity 1 109 0 24 100 0 0 chr13 87911813 87911893 -13961276 + GC_rich Low_complexity Low_complexity 1 80 0 208 305 29 9 chr13 87911993 87912098 -13961071 + G-rich Low_complexity Low_complexity 5 111 0 547 329 259 9 chr13 87912673 87913369 -13959800 + L2 LINE L2 1706 2575 -739 1066 147 18 55 chr13 87913370 87913588 -13959581 - MER63D DNA MER1_type -257 804 595 647 237 60 12 chr13 87913611 87913913 -13959256 - MER63D DNA MER1_type -626 435 58 1408 91 9 32 chr13 87913947 87914168 -13959001 - L1PA6 LINE L1 -5 6149 5934 261 59 29 0 chr13 87914278 87914312 -13958857 - Alu SINE Alu -258 50 16 * 1643 102 0 5 chr13 87914306 87914522 -13958647 + THE1B LTR MaLR 150 364 0 2365 233 82 44 chr13 87914538 87915359 -13957810 - MER66A-int LTR ERV1 -2368 4308 2974 2065 188 94 10 chr13 87915361 87915775 -13957394 - MER66A-int LTR ERV1 -3226 3450 3002 2160 119 0 0 chr13 87915778 87916088 -13957081 + AluSq SINE Alu 1 310 -3 2552 161 13 39 chr13 87916097 87916298 -13956871 - MER66A-int LTR ERV1 -3897 2779 2574 2215 91 3 3 chr13 87916298 87916596 -13956573 + AluSc SINE Alu 1 298 -11 2552 161 13 39 chr13 87916596 87916853 -13956316 - MER66A-int LTR ERV1 -4102 2574 2333 * 8892 174 90 29 chr13 87916839 87918748 -13954421 - MER66A-int LTR ERV1 -4508 2168 53 290 222 11 131 chr13 87918804 87918980 -13954189 - MER66A-int LTR ERV1 -6521 155 1 1359 151 144 77 chr13 87918980 87919390 -13953779 - MER66A LTR ERV1 0 478 98 37524 37 29 1 chr13 87920114 87924644 -13948525 + L1P LINE L1 1 4653 -1493 7304 45 8 1 chr13 87924785 87926403 -13946766 + L1PA5 LINE L1 4543 6146 -8 1068 226 109 53 chr13 87926417 87926886 -13946283 + L1ME3A LINE L1 5571 6065 -105 1337 139 62 43 chr13 87926889 87927147 -13946022 + MER21A LTR ERV1 2 264 -667 2949 170 32 29 chr13 87927153 87927226 -13945943 + MER21A LTR ERV1 377 448 -483 4922 94 28 12 chr13 87927226 87927906 -13945263 - LTR8 LTR ERV1 0 691 1 2949 170 32 29 chr13 87927906 87928385 -13944784 + MER21A LTR ERV1 448 931 0 318 256 0 0 chr13 87928394 87928476 -13944693 + L1ME3A LINE L1 6084 6165 -5 2087 96 7 10 chr13 87928494 87928796 -13944373 + AluY SINE Alu 1 301 -10 2033 117 7 0 chr13 87928954 87929254 -13943915 + AluSx SINE Alu 1 302 -10 257 167 0 0 chr13 87929453 87929495 -13943674 - MIR SINE MIR -6 256 215 726 184 131 24 chr13 87929743 87929949 -13943220 - MLT1C LTR MaLR -3 464 237 498 133 89 0 chr13 87929961 87930051 -13943118 + MER4A LTR ERV1 1 98 -566 1685 140 191 56 chr13 87930051 87930407 -13942762 + MER4A LTR ERV1 261 664 0 272 250 12 50 chr13 87930413 87930493 -13942676 + MER96B DNA MER1_type? 338 414 -3 411 231 308 0 chr13 87930506 87930636 -13942533 - MLT1C LTR MaLR -425 170 1 2179 92 0 0 chr13 87930791 87931085 -13942084 + AluY SINE Alu 1 294 -17 1580 217 58 13 chr13 87931687 87932065 -13941104 - LTR40b LTR ERVL 0 462 68 2407 87 0 0 chr13 87932069 87932379 -13940790 + AluSx SINE Alu 1 310 -2 836 203 83 0 chr13 87932405 87932597 -13940572 - MER3 DNA MER1_type 0 209 2 370 342 103 28 chr13 87932714 87933154 -13940015 - L2 LINE L2 -94 3178 2709 21 0 0 0 chr13 87933270 87933291 -13939878 + AT_rich Low_complexity Low_complexity 1 21 0 1657 106 47 0 chr13 87933319 87933574 -13939595 - L1MA4 LINE L1 -11 6289 6023 206 261 92 0 chr13 87933812 87933877 -13939292 + L2 LINE L2 3239 3309 -4 616 298 99 25 chr13 87934192 87934554 -13938615 - L2 LINE L2 -688 2626 2238 2162 105 3 10 chr13 87934647 87934953 -13938216 - AluSx SINE Alu -8 304 1 344 248 58 25 chr13 87935098 87935219 -13937950 + MIR SINE MIR 133 257 -5 1981 125 20 0 chr13 87935892 87936187 -13936982 - AluSq SINE Alu -12 301 1 284 159 0 16 chr13 87936989 87937052 -13936117 + CT-rich Low_complexity Low_complexity 1 62 0 1630 142 3 58 chr13 87937052 87937362 -13935807 - AluJo SINE Alu -19 293 1 4382 114 22 2 chr13 87937403 87938025 -13935144 + MER41B LTR ERV1 1 635 0 2053 122 0 0 chr13 87939842 87940136 -13933033 + AluSx SINE Alu 1 294 -18 1498 168 160 6 chr13 87940394 87940773 -13932396 - MER66A LTR ERV1 -5 473 2 212 203 51 17 chr13 87940934 87940993 -13932176 - MER91A DNA MER1_type -116 80 20 2176 114 0 3 chr13 87941339 87941646 -13931523 + AluSg SINE Alu 1 306 -4 6564 41 17 22 chr13 87941907 87942770 -13930399 + SVA Other Other 527 1385 -1 1605 130 0 12 chr13 87942864 87943111 -13930058 - AluSx SINE Alu -68 244 1 680 205 0 0 chr13 87943121 87943243 -13929926 - FLAM_C SINE Alu -20 123 2 852 218 41 15 chr13 87943382 87943579 -13929590 + MIR SINE MIR 28 229 -33 21 57 0 0 chr13 87943612 87943647 -13929522 + AT_rich Low_complexity Low_complexity 1 35 0 184 89 22 22 chr13 87943661 87943706 -13929463 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 180 0 0 0 chr13 87944218 87944238 -13928931 + (GA)n Simple_repeat Simple_repeat 1 20 0 1432 163 103 34 chr13 87944416 87944766 -13928403 + MLT1A2 LTR MaLR 1 374 0 237 280 136 25 chr13 87945259 87945495 -13927674 + L1M4 LINE L1 2530 2791 -3355 949 234 142 0 chr13 87945945 87946163 -13927006 - MIR SINE MIR -13 249 1 350 284 86 77 chr13 87946175 87946513 -13926656 + L1M4 LINE L1 3105 3445 -2701 1780 120 64 3 chr13 87946526 87946809 -13926360 - AluSx SINE Alu -12 300 1 2033 131 7 0 chr13 87948363 87948661 -13924508 - AluSx SINE Alu -12 300 1 194 105 74 32 chr13 87948893 87948988 -13924181 + (TA)n Simple_repeat Simple_repeat 1 99 0 244 83 42 0 chr13 87949062 87949110 -13924059 + (TA)n Simple_repeat Simple_repeat 1 50 0 2065 131 0 0 chr13 87949713 87950025 -13923144 - AluSx SINE Alu 0 312 1 212 400 101 29 chr13 87950055 87950473 -13922696 - L3 LINE CR1 -1055 522 75 1619 207 35 40 chr13 87951295 87951603 -13921566 - MLT1A2 LTR MaLR 0 374 67 1881 155 0 3 chr13 87951603 87951899 -13921270 + AluJb SINE Alu 5 299 -13 1619 207 35 40 chr13 87951899 87951966 -13921203 - MLT1A2 LTR MaLR -307 67 1 242 270 0 0 chr13 87953456 87953519 -13919650 + (TG)n Simple_repeat Simple_repeat 1 63 0 310 181 145 12 chr13 87953868 87953951 -13919218 - MLT1A2 LTR MaLR -278 96 3 219 155 0 86 chr13 87953951 87954009 -13919160 - MER5B DNA MER1_type -104 74 22 405 212 68 25 chr13 87954200 87954318 -13918851 + MIR3 SINE MIR 68 190 -18 282 319 9 35 chr13 87955116 87955232 -13917937 + L2 LINE L2 3160 3272 0 2064 90 0 10 chr13 87955338 87955627 -13917542 - AluY SINE Alu -5 306 21 241 275 14 14 chr13 87955640 87955709 -13917460 + L2 LINE L2 3203 3271 -1 330 121 152 0 chr13 87957450 87957516 -13915653 - L1MB8 LINE L1 0 6178 6103 4140 156 34 57 chr13 87957540 87958004 -13915165 - L1MB4 LINE L1 -6 6174 5701 2689 98 17 0 chr13 87958004 87958362 -13914807 - THE1B LTR MaLR 0 364 1 4140 156 34 57 chr13 87958362 87958735 -13914434 - L1MB4 LINE L1 -479 5701 5321 2101 125 68 52 chr13 87958735 87959119 -13914050 - MLT1B LTR MaLR 0 390 1 4140 156 34 57 chr13 87959119 87959156 -13914013 - L1MB4 LINE L1 -859 5321 5335 1785 173 3 7 chr13 87959156 87959440 -13913729 - AluJb SINE Alu -24 288 6 4140 156 34 57 chr13 87959440 87959515 -13913654 - L1MB4 LINE L1 -844 5336 5261 2128 120 7 3 chr13 87959782 87960073 -13913096 - AluSc SINE Alu -12 297 6 376 212 76 0 chr13 87960133 87960251 -13912918 - MIR SINE MIR -70 192 66 3443 208 97 9 chr13 87961713 87962565 -13910604 + MER63C DNA MER1_type 1 927 -3 241 228 18 0 chr13 87962701 87962758 -13910411 + L2 LINE L2 3251 3308 -5 727 118 4 26 chr13 87963969 87964223 -13908946 + AluSx SINE Alu 1 300 -12 3696 149 30 0 chr13 87964338 87964967 -13908202 - L1MB2 LINE L1 0 6171 5524 1941 69 21 0 chr13 87964976 87965457 -13907712 - L1PA5 LINE L1 0 6154 5585 238 281 42 21 chr13 87965494 87965590 -13907579 - MIR3 SINE MIR -40 168 71 802 288 108 8 chr13 87965594 87965972 -13907197 - LTR33 LTR ERVL -4 517 102 1979 164 0 3 chr13 87966151 87966462 -13906707 + AluJb SINE Alu 1 310 -2 227 156 16 31 chr13 87966507 87966571 -13906598 - L1ME4a LINE L1 -67 6054 5992 1134 228 60 27 chr13 87967015 87967348 -13905821 + MLT1G1 LTR MaLR 1 344 -251 2008 138 0 10 chr13 87968098 87968394 -13904775 - AluSg SINE Alu -17 293 1 306 50 0 0 chr13 87969019 87969059 -13904110 + (TG)n Simple_repeat Simple_repeat 2 41 0 850 150 0 0 chr13 87969128 87969255 -13903914 + FLAM_C SINE Alu 3 129 -4 263 275 81 7 chr13 87969255 87969404 -13903765 + L1MEd LINE L1 902 1061 -5058 239 297 73 31 chr13 87969380 87969572 -13903597 + HAL1 LINE L1 1153 1352 -1138 * 333 160 30 120 chr13 87969663 87969763 -13903406 + MER110A LTR ERV1 80 170 -298 1122 234 62 7 chr13 87969836 87970143 -13903026 + MER110 LTR ERV1 166 489 -2 496 275 19 34 chr13 87970154 87970239 -13902930 + HAL1 LINE L1 1388 1473 -1017 2061 127 38 0 chr13 87970239 87970530 -13902639 + AluSq SINE Alu 1 302 -11 496 275 19 34 chr13 87970530 87970651 -13902518 + HAL1 LINE L1 1473 1591 -899 773 216 113 25 chr13 87970661 87970865 -13902304 + MER58A DNA MER1_type 3 224 0 4553 107 32 1 chr13 87970882 87971538 -13901631 + L1PA16 LINE L1 5482 6157 -9 251 231 39 39 chr13 87971557 87971635 -13901534 + HAL1 LINE L1 1607 1684 -806 2323 107 68 3 chr13 87972126 87972464 -13900705 - THE1B LTR MaLR 0 364 5 327 337 28 6 chr13 87972643 87972821 -13900348 - L2 LINE L2 -655 2659 2478 826 230 133 76 chr13 87972837 87973350 -13899819 + MER34 LTR ERV1 1 542 0 446 252 80 13 chr13 87973442 87973593 -13899576 + LTR16A1 LTR ERVL 1 161 -296 1141 236 106 88 chr13 87973619 87974094 -13899075 + Charlie2a DNA MER1_type 325 817 -2045 1404 205 17 20 chr13 87974094 87974387 -13898782 + AluJo SINE Alu 1 292 -20 1141 236 106 88 chr13 87974387 87974589 -13898580 + Charlie2a DNA MER1_type 817 1014 -1848 245 233 33 0 chr13 87974569 87974629 -13898540 + Charlie2a DNA MER1_type 2132 2193 -669 * 1785 225 40 36 chr13 87974645 87975139 -13898030 - MLT1D LTR MaLR -9 496 1 1213 209 47 57 chr13 87975139 87975618 -13897551 + Charlie2a DNA MER1_type 2240 2713 -149 1161 163 78 78 chr13 87975624 87975682 -13897487 + L1ME3A LINE L1 5854 5911 -259 2380 169 37 70 chr13 87975682 87976168 -13897001 + MER70A LTR ERVL 3 472 0 1161 163 78 78 chr13 87976168 87976220 -13896949 + L1ME3A LINE L1 5911 5962 -208 1840 185 0 0 chr13 87976220 87976512 -13896657 + AluSx SINE Alu 1 292 -20 1161 163 78 78 chr13 87976512 87976706 -13896463 + L1ME3A LINE L1 5961 6159 -11 428 270 66 46 chr13 87976816 87977057 -13896112 + L1MC4 LINE L1 5313 5558 -2250 2161 114 53 39 chr13 87977075 87977433 -13895736 - THE1B LTR MaLR -1 363 1 302 163 62 150 chr13 87977678 87977741 -13895428 + Charlie2a DNA MER1_type 2711 2778 -84 2071 152 0 3 chr13 87977741 87978050 -13895119 - AluSx SINE Alu -4 308 1 302 163 62 150 chr13 87978050 87978146 -13895023 + Charlie2a DNA MER1_type 2778 2856 -6 2334 156 69 0 chr13 87979974 87980378 -13892791 - MSTB1 LTR MaLR 0 432 1 2251 202 84 35 chr13 87980657 87981250 -13891919 - MLT1E2 LTR MaLR 0 626 5 21 0 0 0 chr13 87982386 87982407 -13890762 + AT_rich Low_complexity Low_complexity 1 21 0 2836 193 12 12 chr13 87983439 87983998 -13889171 - MER89 LTR ERV1 0 559 1 1725 132 123 26 chr13 87984290 87984458 -13888711 - THE1C LTR MaLR 0 375 225 537 58 0 0 chr13 87984458 87984527 -13888642 + (GA)n Simple_repeat Simple_repeat 1 69 0 1725 132 123 26 chr13 87984527 87984700 -13888469 - THE1C LTR MaLR -150 225 1 2134 215 106 13 chr13 87985064 87985426 -13887743 - L1MB7 LINE L1 -19 6165 5737 4254 80 7 0 chr13 87985426 87985976 -13887193 + MER41A LTR ERV1 1 554 0 2134 215 106 13 chr13 87985976 87986143 -13887026 - L1MB7 LINE L1 -447 5737 5587 235 360 6 49 chr13 87986282 87986446 -13886723 + L2 LINE L2 3099 3255 -17 281 224 60 0 chr13 87987775 87987842 -13885327 - LTR16A1 LTR ERVL 0 457 387 657 238 38 24 chr13 87988303 87988513 -13884656 + THE1C LTR MaLR 163 375 0 286 220 35 116 chr13 87988645 87988818 -13884351 + MLT1J LTR MaLR 140 298 -213 1849 250 85 15 chr13 87988873 87990068 -13883101 + L1MC4 LINE L1 6458 7878 -164 1288 216 110 61 chr13 87990473 87990982 -13882187 - MLT1F1 LTR MaLR -8 559 1 211 171 0 0 chr13 87992545 87992580 -13880589 - MER5B DNA MER1_type -24 154 120 180 329 12 12 chr13 87992584 87992666 -13880503 + MER5A DNA MER1_type 56 137 -52 708 195 0 8 chr13 87993101 87993219 -13879950 - FLAM_A SINE Alu -16 117 1 1075 247 51 12 chr13 87993261 87993593 -13879576 - L1MB5 LINE L1 0 6174 5830 763 172 55 7 chr13 87993593 87993738 -13879431 - MLT1B LTR MaLR 0 390 239 189 171 0 0 chr13 87994029 87994064 -13879105 + (CA)n Simple_repeat Simple_repeat 2 36 0 381 293 162 31 chr13 87994710 87994939 -13878230 + MLT1J LTR MaLR 111 369 -142 1131 264 67 13 chr13 87995013 87995328 -13877841 - MLT1J1 LTR MaLR -88 358 27 289 232 210 22 chr13 87996158 87996296 -13876873 - MIR3 SINE MIR -11 197 34 2561 179 28 37 chr13 87996335 87996904 -13876265 + L1MB4 LINE L1 5617 6180 0 2530 62 0 7 chr13 87996942 87997246 -13875923 + AluY SINE Alu 1 302 -9 2048 130 0 0 chr13 87997254 87997568 -13875601 + AluSx SINE Alu 1 314 0 2460 74 0 3 chr13 87998019 87998316 -13874853 - AluSg SINE Alu -14 296 1 189 213 0 0 chr13 87998492 87998539 -13874630 + GA-rich Low_complexity Low_complexity 1 47 0 975 164 0 0 chr13 87998833 87998979 -13874190 + AluJb SINE Alu 137 282 -30 206 178 0 44 chr13 87998983 87999050 -13874119 + (TA)n Simple_repeat Simple_repeat 1 65 -21 6420 136 69 29 chr13 87999050 88000231 -13872938 + Tigger3b DNA MER2_type 1 1228 -3 206 178 0 44 chr13 88000231 88000253 -13872916 + (TA)n Simple_repeat Simple_repeat 65 86 0 2199 119 64 3 chr13 88000265 88000609 -13872560 + MER47A DNA MER2_type 1 365 -1 327 257 34 61 chr13 88000968 88001116 -13872053 - MER5A DNA MER1_type -15 174 31 2013 127 75 67 chr13 88001273 88001660 -13871509 + MLT1B LTR MaLR 1 390 0 2142 127 130 5 chr13 88001669 88002047 -13871122 - MSTA LTR MaLR -3 425 1 1871 203 53 10 chr13 88003061 88003475 -13869694 + MLT1C LTR MaLR 34 465 -2 231 246 0 29 chr13 88003661 88003730 -13869439 + L2 LINE L2 3206 3272 0 210 141 31 31 chr13 88003878 88003942 -13869227 + GA-rich Low_complexity Low_complexity 6 69 0 511 259 184 32 chr13 88004506 88004822 -13868347 - MLT1H1 LTR MaLR -182 373 10 21 0 0 0 chr13 88005093 88005114 -13868055 + AT_rich Low_complexity Low_complexity 1 21 0 532 294 147 11 chr13 88005264 88005691 -13867478 + L1ME4a LINE L1 5425 5912 -209 985 17 0 9 chr13 88006066 88006222 -13866947 - L1PA2 LINE L1 0 6155 6039 14104 26 5 1 chr13 88006338 88008602 -13864567 - L1PA2 LINE L1 -145 6010 3739 239 313 0 0 chr13 88008934 88009014 -13864155 - L1M4 LINE L1 -1162 4984 4905 355 233 139 31 chr13 88009316 88009445 -13863724 + MIR SINE MIR 118 260 -2 1869 123 11 4 chr13 88010298 88010566 -13862603 - AluSx SINE Alu 0 312 43 1349 235 36 14 chr13 88010567 88011121 -13862048 + LTR68 LTR ERV1 2 613 -127 387 204 0 34 chr13 88011528 88011616 -13861553 - MER58B DNA MER1_type 0 341 257 1229 122 5 43 chr13 88012307 88012495 -13860674 - AluSx SINE Alu -129 183 3 2532 177 63 39 chr13 88012518 88012920 -13860249 - L1MB7 LINE L1 -318 5866 5475 1790 171 0 7 chr13 88012920 88013213 -13859956 - AluJb SINE Alu -21 291 1 2532 177 63 39 chr13 88013213 88013433 -13859736 - L1MB7 LINE L1 -709 5475 5262 1227 194 164 4 chr13 88013433 88013696 -13859473 - AluSx SINE Alu -7 305 1 2532 177 63 39 chr13 88013696 88013920 -13859249 - L1MB7 LINE L1 -922 5262 4995 816 231 102 50 chr13 88013920 88014284 -13858885 - L1MC4 LINE L1 -226 7816 7434 918 142 0 16 chr13 88014379 88014506 -13858663 + FLAM_C SINE Alu 1 125 -8 180 111 0 0 chr13 88015077 88015104 -13858065 + (TA)n Simple_repeat Simple_repeat 2 28 0 218 182 0 0 chr13 88015530 88015574 -13857595 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2167 141 30 50 chr13 88016185 88016221 -13856948 + MLT1B LTR MaLR 1 36 -354 1394 182 73 92 chr13 88016221 88016687 -13856482 + MSTB2 LTR MaLR 1 457 0 2167 141 30 50 chr13 88016687 88017046 -13856123 + MLT1B LTR MaLR 36 388 -2 267 272 152 16 chr13 88017640 88017765 -13855404 - L3 LINE CR1 -63 1514 1373 355 362 16 8 chr13 88019470 88019597 -13853572 - L2 LINE L2 -1 3271 3144 2083 116 3 23 chr13 88019618 88019920 -13853249 + AluSx SINE Alu 1 296 -16 2174 115 22 0 chr13 88020446 88020767 -13852402 - THE1A LTR MaLR 0 355 28 232 250 0 0 chr13 88020784 88020840 -13852329 + A-rich Low_complexity Low_complexity 1 56 0 2319 118 30 18 chr13 88020940 88021278 -13851891 + THE1B LTR MaLR 23 364 0 189 107 0 0 chr13 88021511 88021539 -13851630 + (T)n Simple_repeat Simple_repeat 1 28 0 3667 34 0 2 chr13 88021540 88021951 -13851218 - L1PA3 LINE L1 -3 6152 5743 4427 25 2 0 chr13 88021951 88022551 -13850618 + L1PA3 LINE L1 5166 5766 -389 2268 167 20 92 chr13 88022908 88023261 -13849908 - LTR24 LTR ERV1 0 467 159 3557 121 26 30 chr13 88023261 88023790 -13849379 + MER1A DNA MER1_type 1 527 0 2268 167 20 92 chr13 88023790 88023939 -13849230 - LTR24 LTR ERV1 -308 159 1 259 197 45 15 chr13 88023939 88024005 -13849164 + MIR SINE MIR 103 170 -92 725 180 69 120 chr13 88024049 88024387 -13848782 + MER92B LTR ERV1 12 636 0 2373 119 73 14 chr13 88024609 88024953 -13848216 + THE1B LTR MaLR 1 364 0 1445 191 64 104 chr13 88025677 88025788 -13847381 + MER31B LTR ERV1 1 115 -351 1560 178 15 4 chr13 88025788 88026058 -13847111 + AluJb SINE Alu 1 273 -39 1445 191 64 104 chr13 88026058 88026428 -13846741 + MER31B LTR ERV1 115 463 -3 258 213 28 120 chr13 88027349 88027457 -13845712 - LTR49-int LTR ERV1 -1021 3915 3818 3703 120 41 32 chr13 88027463 88027855 -13845314 - MER61E LTR ERV1 -4 565 165 2293 107 0 0 chr13 88027855 88028154 -13845015 - AluSx SINE Alu -13 299 1 3703 120 41 32 chr13 88028154 88028321 -13844848 - MER61E LTR ERV1 -404 165 1 30 59 0 0 chr13 88028422 88028473 -13844696 + AT_rich Low_complexity Low_complexity 1 51 0 988 128 0 0 chr13 88028473 88028606 -13844563 - FLAM_C SINE Alu 0 133 1 267 174 0 18 chr13 88028608 88028663 -13844506 - LTR49-int LTR ERV1 -1214 3722 3672 1184 145 29 19 chr13 88029163 88029370 -13843799 - LTR49 LTR ERV1 0 595 387 2674 132 12 14 chr13 88029371 88029795 -13843374 - MER57B LTR ERV1 -2 432 10 2428 118 39 0 chr13 88029864 88030227 -13842942 - LTR49 LTR ERV1 -217 378 2 405 253 109 17 chr13 88030398 88030572 -13842597 - MER67A LTR ERV1 0 543 354 280 346 0 24 chr13 88030701 88030828 -13842341 - MER67B LTR ERV1 -500 161 38 2094 140 0 3 chr13 88031065 88031373 -13841796 + AluSx SINE Alu 1 307 -5 1735 183 13 3 chr13 88031383 88031683 -13841486 + AluJb SINE Alu 1 303 -9 2283 199 81 23 chr13 88032234 88032315 -13840854 + MER74B LTR ERVL 49 124 -498 3900 98 10 73 chr13 88032315 88032780 -13840389 + MER41A LTR ERV1 1 423 -131 1836 106 53 0 chr13 88032780 88033045 -13840124 - AluSg SINE Alu -31 279 1 3900 98 10 73 chr13 88033045 88033170 -13839999 + MER41A LTR ERV1 423 554 0 2283 199 81 23 chr13 88033170 88033610 -13839559 + MER74B LTR ERVL 124 600 -22 1624 227 50 33 chr13 88034434 88034893 -13838276 - MLT1C LTR MaLR 0 467 1 338 231 154 10 chr13 88035284 88035388 -13837781 + MIR SINE MIR 47 165 -97 462 101 0 0 chr13 88035389 88035458 -13837711 + (TC)n Simple_repeat Simple_repeat 1 69 0 1811 187 0 3 chr13 88035458 88035768 -13837401 - AluJb SINE Alu -3 309 1 274 229 16 0 chr13 88035793 88035854 -13837315 + MIR SINE MIR 200 261 -1 2409 192 127 18 chr13 88037435 88038008 -13835161 - MER92B LTR ERV1 0 636 1 661 188 23 0 chr13 88038026 88038159 -13835010 - MER65A LTR ERV1 0 445 310 2061 153 55 11 chr13 88038260 88038514 -13834655 - MER65A LTR ERV1 -64 381 105 788 138 28 35 chr13 88038514 88038659 -13834510 - L1PA16 LINE L1 -1 6165 6022 2061 153 55 11 chr13 88038659 88038769 -13834400 - MER65A LTR ERV1 -340 105 1 376 212 47 12 chr13 88041570 88041655 -13831514 - MLT1I LTR MaLR -37 372 285 3004 170 12 25 chr13 88041739 88042257 -13830912 - MER41E LTR ERV1 -1 511 1 995 220 99 0 chr13 88042792 88043065 -13830104 - MLT1D LTR MaLR 0 505 206 843 143 14 7 chr13 88043118 88043258 -13829911 - FRAM SINE Alu -10 166 26 2031 146 10 0 chr13 88043267 88043576 -13829593 - AluSx SINE Alu 0 312 1 707 229 26 26 chr13 88043576 88043768 -13829401 - MLT1D LTR MaLR -311 194 3 219 377 7 14 chr13 88043781 88043919 -13829250 - MIR SINE MIR -16 246 110 185 252 159 37 chr13 88043960 88044067 -13829102 + MIR SINE MIR 10 129 -133 224 288 17 17 chr13 88044218 88044277 -13828892 + MIR SINE MIR 10 68 -194 379 198 111 28 chr13 88045785 88045917 -13827252 - AluJo SINE Alu -113 189 117 386 121 15 0 chr13 88045917 88045983 -13827186 + (TA)n Simple_repeat Simple_repeat 1 67 0 304 194 15 0 chr13 88045984 88046051 -13827118 - L1MC4 LINE L1 -1339 6703 6636 324 0 0 0 chr13 88046055 88046091 -13827078 + (GA)n Simple_repeat Simple_repeat 2 37 0 733 182 0 0 chr13 88046091 88046201 -13826968 - AluJo SINE Alu -194 118 9 1089 215 73 104 chr13 88046409 88046967 -13826202 - MER34 LTR ERV1 -1 541 1 725 175 0 0 chr13 88047079 88047199 -13825970 - MER5B DNA MER1_type -53 125 6 667 226 92 36 chr13 88047874 88048180 -13824989 + L1MEd LINE L1 895 1217 -4902 583 286 89 26 chr13 88048190 88048581 -13824588 + L1MEd LINE L1 1262 1677 -4452 1789 264 49 34 chr13 88049071 88049802 -13823367 + L1MEd LINE L1 2166 2907 -3222 1898 134 3 0 chr13 88051206 88051490 -13821679 + AluSx SINE Alu 28 312 0 195 254 0 68 chr13 88052823 88052882 -13820287 - L2 LINE L2 -4 3268 3214 240 420 6 17 chr13 88053146 88053320 -13819849 - L2 LINE L2 -457 2857 2686 504 338 18 36 chr13 88053321 88053652 -13819517 + L1ME LINE L1 5446 5770 -351 558 316 25 0 chr13 88055294 88055452 -13817717 - MIR3 SINE MIR -11 197 36 21 0 0 0 chr13 88055543 88055564 -13817605 + AT_rich Low_complexity Low_complexity 1 21 0 348 332 15 36 chr13 88055674 88055824 -13817345 - MIR SINE MIR -62 146 19 1294 191 11 34 chr13 88055873 88056140 -13817029 + AluJo SINE Alu 6 266 -46 21 0 0 0 chr13 88056148 88056169 -13817000 + AT_rich Low_complexity Low_complexity 1 21 0 385 353 0 0 chr13 88057213 88057315 -13815854 - L2 LINE L2 -1 3312 3211 3655 194 25 5 chr13 88057337 88057976 -13815193 + MER82 DNA MER2_type 1 652 -1 1787 157 54 0 chr13 88058155 88058449 -13814720 - AluJb SINE Alu -2 310 1 2383 96 0 3 chr13 88059241 88059544 -13813625 - AluSx SINE Alu -9 303 2 1744 68 4 46 chr13 88059693 88059930 -13813239 - AluY SINE Alu -2 309 83 2671 111 11 3 chr13 88060687 88061048 -13812121 - THE1B LTR MaLR 0 364 1 211 397 44 7 chr13 88061159 88061295 -13811874 - MIR3 SINE MIR -14 194 54 1856 136 93 6 chr13 88061725 88062048 -13811121 + MLT1C LTR MaLR 116 466 -1 251 298 11 11 chr13 88062080 88062174 -13810995 + ERVL LTR ERVL 4089 4182 -1582 460 244 118 0 chr13 88062368 88062487 -13810682 + MIR SINE MIR 31 163 -99 337 213 17 0 chr13 88062487 88062565 -13810604 - MLT1D LTR MaLR 0 505 441 275 233 81 23 chr13 88063004 88063090 -13810079 + MIR SINE MIR 41 131 -77 714 161 47 67 chr13 88063324 88063446 -13809723 + MER53 DNA DNA 1 119 -70 1727 170 32 0 chr13 88063446 88063723 -13809446 - AluJo SINE Alu -26 286 1 714 161 47 67 chr13 88063723 88063793 -13809376 + MER53 DNA DNA 119 189 0 568 162 0 18 chr13 88064180 88064291 -13808878 + MER53 DNA DNA 58 166 -23 1268 194 102 63 chr13 88064388 88064497 -13808672 + MLT1D LTR MaLR 1 104 -401 1794 153 17 24 chr13 88064497 88064792 -13808377 + AluJo SINE Alu 1 293 -19 1268 194 102 63 chr13 88064792 88065161 -13808008 + MLT1D LTR MaLR 104 498 -7 480 313 23 23 chr13 88065339 88065515 -13807654 - MIR3 SINE MIR -12 196 21 424 303 70 50 chr13 88065797 88066038 -13807131 + MIR SINE MIR 3 248 -14 203 292 124 29 chr13 88066161 88066298 -13806871 + L2 LINE L2 3130 3279 -34 183 182 0 0 chr13 88066406 88066439 -13806730 - MIR SINE MIR -111 151 119 270 265 133 26 chr13 88067726 88067877 -13805292 + L3b LINE CR1 1106 1272 -311 445 281 68 70 chr13 88067891 88068366 -13804803 + L1ME4a LINE L1 5315 5791 -330 370 165 154 0 chr13 88068367 88068458 -13804711 - MER58 DNA MER1_type 0 2420 2316 495 204 11 0 chr13 88068471 88068559 -13804610 - MER58 DNA MER1_type -2325 95 7 383 263 164 18 chr13 88068582 88068856 -13804313 + L1ME4a LINE L1 5790 6103 -18 1812 159 13 10 chr13 88069113 88069415 -13803754 + AluJb SINE Alu 5 307 -5 351 229 48 0 chr13 88070212 88070295 -13802874 - MIR SINE MIR -109 153 67 2045 145 0 0 chr13 88070512 88070809 -13802360 - AluSx SINE Alu -15 297 1 305 324 46 0 chr13 88071286 88071394 -13801775 - L2 LINE L2 0 3272 3160 255 192 77 0 chr13 88071499 88071551 -13801618 - MLT1H LTR MaLR -16 579 524 2212 163 28 21 chr13 88071580 88071967 -13801202 - MLT1B LTR MaLR 0 390 1 792 273 43 58 chr13 88071969 88072295 -13800874 - MLT1H LTR MaLR -200 349 29 2030 169 114 20 chr13 88074146 88074601 -13798568 - MLT1D LTR MaLR -7 498 1 800 154 0 29 chr13 88074972 88075108 -13798061 - FLAM_A SINE Alu 0 142 11 1721 164 136 6 chr13 88075167 88075490 -13797679 + MLT1A1 LTR MaLR 1 365 0 2180 114 0 0 chr13 88075826 88076160 -13797009 + AluSx SINE Alu 5 338 0 925 167 105 6 chr13 88076267 88076429 -13796740 + MER45A DNA AcHobo 1 178 0 263 291 93 33 chr13 88076633 88076784 -13796385 - MIR SINE MIR -80 182 23 33 56 0 0 chr13 88077077 88077131 -13796038 + AT_rich Low_complexity Low_complexity 1 54 0 244 241 233 23 chr13 88077145 88077278 -13795891 + L1ME4a LINE L1 5959 6119 -2 426 243 112 0 chr13 88077300 88077407 -13795762 - L2 LINE L2 -4 3309 3191 221 296 167 0 chr13 88077441 88077549 -13795620 - L3 LINE CR1 -610 967 842 780 344 113 33 chr13 88077593 88078108 -13795061 - L3 LINE CR1 -824 753 198 191 146 24 0 chr13 88079862 88079903 -13793266 + (TG)n Simple_repeat Simple_repeat 1 42 0 2062 127 0 0 chr13 88081449 88081725 -13791444 - AluSx SINE Alu -36 276 1 1854 196 57 29 chr13 88083168 88083622 -13789547 + MLT1C LTR MaLR 1 467 0 1079 140 84 0 chr13 88083703 88083882 -13789287 - MLT1B LTR MaLR 0 390 197 8011 210 54 104 chr13 88084232 88085122 -13788047 - L1MA9 LINE L1 -25 7308 6375 2394 82 3 0 chr13 88085122 88085416 -13787753 + AluSq SINE Alu 1 295 -18 8011 210 54 104 chr13 88085416 88085690 -13787479 - L1MA9 LINE L1 -958 6375 6089 396 0 0 0 chr13 88085690 88085734 -13787435 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 8011 210 54 104 chr13 88085734 88086091 -13787078 - L1MA9 LINE L1 -1244 6089 5716 1156 177 0 29 chr13 88086091 88086256 -13786913 - AluJo SINE Alu -15 297 129 323 22 0 22 chr13 88086256 88086301 -13786868 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1942 100 41 0 chr13 88086301 88086571 -13786598 - AluSc SINE Alu -28 281 1 1156 177 0 29 chr13 88086571 88086613 -13786556 - AluJo SINE Alu -181 131 95 8011 210 54 104 chr13 88086613 88088167 -13785002 - L1MA9 LINE L1 -1617 5716 4085 814 169 0 40 chr13 88088167 88088315 -13784854 - AluSg/x SINE Alu -3 309 168 8011 210 54 104 chr13 88088315 88089042 -13784127 - L1MA9 LINE L1 -3248 4085 3323 2270 92 0 22 chr13 88089042 88089357 -13783812 - AluSx SINE Alu -4 308 1 8011 210 54 104 chr13 88089357 88093262 -13779907 - L1MA9 LINE L1 -4010 3323 8 513 296 0 41 chr13 88093447 88093643 -13779526 - MER5A DNA MER1_type -1 188 1 23 0 0 0 chr13 88095332 88095355 -13777814 + AT_rich Low_complexity Low_complexity 1 23 0 2789 142 51 37 chr13 88095371 88095884 -13777285 - L1MC1 LINE L1 0 6333 5814 557 100 0 0 chr13 88095884 88095954 -13777215 - AluY SINE Alu -26 285 216 1929 154 0 0 chr13 88096042 88096334 -13776835 - AluJb SINE Alu -20 292 1 737 266 137 14 chr13 88097185 88097463 -13775706 - MLT1J2 LTR MaLR -7 443 132 2557 63 35 0 chr13 88098780 88099095 -13774074 - L1PA4 LINE L1 -1 6154 5829 245 303 53 0 chr13 88099667 88099743 -13773426 + MER81 DNA DNA 35 114 0 301 191 36 0 chr13 88100036 88100120 -13773049 + CT-rich Low_complexity Low_complexity 1 87 0 1046 192 2 1 chr13 88100164 88100360 -13772809 - L1MC/D LINE L1 -729 5615 5416 478 265 38 0 chr13 88100590 88100722 -13772447 - Charlie8 DNA MER1_type -2231 186 50 292 276 17 35 chr13 88102535 88102651 -13770518 + L1MC5 LINE L1 7374 7487 -474 2210 272 121 45 chr13 88102672 88103742 -13769427 + L2 LINE L2 1597 2777 -537 2105 113 24 0 chr13 88103742 88104035 -13769134 + AluSc SINE Alu 1 300 -9 2210 272 121 45 chr13 88104035 88104211 -13768958 + L2 LINE L2 2777 2938 -376 328 252 130 32 chr13 88104209 88104332 -13768837 + L2 LINE L2 3179 3313 0 * 316 323 52 4 chr13 88104574 88104822 -13768347 + L1M4 LINE L1 2188 2447 -3699 249 256 105 0 chr13 88104875 88104961 -13768208 + L1M4 LINE L1 2521 2615 -3531 669 246 62 6 chr13 88105174 88105353 -13767816 + MER5A DNA MER1_type 1 189 0 3352 79 22 25 chr13 88106187 88106632 -13766537 + MLT2A1 LTR ERVL 1 444 0 225 0 0 0 chr13 88106672 88106697 -13766472 + (A)n Simple_repeat Simple_repeat 1 25 0 354 313 86 25 chr13 88106893 88107091 -13766078 + MIR SINE MIR 46 255 -7 453 239 188 6 chr13 88107638 88107792 -13765377 + MER5A DNA MER1_type 4 189 0 934 211 25 11 chr13 88109402 88109671 -13763498 + MER3 DNA MER1_type 21 2417 0 2511 77 0 0 chr13 88109816 88110116 -13763053 - AluSg SINE Alu -10 300 1 228 268 0 0 chr13 88110516 88110572 -13762597 + (TA)n Simple_repeat Simple_repeat 1 56 0 190 190 17 17 chr13 88110580 88110638 -13762531 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 217 280 0 0 chr13 88111886 88111936 -13761233 + MIR SINE MIR 85 134 -128 1255 156 19 5 chr13 88112369 88112581 -13760588 - MER89 LTR ERV1 0 559 345 329 264 0 0 chr13 88112599 88112671 -13760498 - MER5A DNA MER1_type -52 137 66 1324 191 46 31 chr13 88112683 88113007 -13760162 - MER89 LTR ERV1 -229 330 2 223 143 54 28 chr13 88113054 88113097 -13760072 + MIR SINE MIR 74 192 -70 341 325 171 0 chr13 88113591 88113714 -13759455 + MER5B DNA MER1_type 1 144 -34 695 239 15 8 chr13 88113733 88113908 -13759261 - MER5A DNA MER1_type 0 189 3 610 81 0 12 chr13 88114648 88114734 -13758435 - MER89 LTR ERV1 -69 490 406 1971 133 3 19 chr13 88114966 88115282 -13757887 + AluSq SINE Alu 3 313 0 241 311 27 0 chr13 88115956 88116030 -13757139 - MIR SINE MIR -12 250 175 188 155 138 103 chr13 88116013 88116071 -13757098 - MIR3 SINE MIR -46 162 103 * 387 0 0 0 chr13 88116518 88116561 -13756608 + (TG)n Simple_repeat Simple_repeat 1 43 0 950 113 0 15 chr13 88118103 88118118 -13755051 - AluJb SINE Alu -181 131 117 315 0 0 0 chr13 88118118 88118153 -13755016 + (TG)n Simple_repeat Simple_repeat 2 36 0 950 113 0 15 chr13 88118153 88118270 -13754899 - AluJb SINE Alu -195 117 1 1160 242 111 36 chr13 88118414 88118803 -13754366 - MLT1E LTR MaLR 0 593 176 289 349 37 37 chr13 88120068 88120257 -13752912 + MIR SINE MIR 3 191 -71 1793 199 47 32 chr13 88121164 88121572 -13751597 - MLT2D LTR ERVL 0 414 1 389 275 150 33 chr13 88121882 88122111 -13751058 + MIR SINE MIR 4 251 -11 1847 169 228 0 chr13 88123167 88123545 -13749624 - LTR65 LTR ERV1 -37 632 169 1421 300 78 12 chr13 88123545 88124148 -13749021 - L2 LINE L2 -151 3162 2509 37879 109 8 17 chr13 88124706 88130474 -13742695 - L1P2 LINE L1 -431 5723 11 1137 128 29 2 chr13 88130477 88130769 -13742400 - L1P4 LINE L1 -382 5781 5179 3005 202 52 7 chr13 88130927 88131601 -13741568 + L1 LINE L1 4313 5016 -1130 822 220 4 65 chr13 88131613 88131858 -13741311 - L2 LINE L2 -864 2450 2221 490 263 69 48 chr13 88131869 88132235 -13740934 + L1MEd LINE L1 990 1415 -4895 2084 146 0 3 chr13 88132235 88132544 -13740625 + AluSx SINE Alu 1 308 -4 490 263 69 48 chr13 88132544 88132711 -13740458 + L1MEd LINE L1 1415 1577 -4733 5694 89 20 1 chr13 88132991 88133755 -13739414 - L1PA11 LINE L1 0 6174 5397 386 244 108 52 chr13 88134210 88134423 -13738746 + L2 LINE L2 3077 3301 -12 540 291 112 55 chr13 88134430 88135254 -13737915 + L1MEd LINE L1 2200 3070 -3059 363 137 27 14 chr13 88135255 88135328 -13737841 + ORSL DNA AcHobo 158 231 -44 361 311 0 10 chr13 88135761 88135864 -13737305 + L2 LINE L2 2981 3082 -231 1980 135 6 6 chr13 88138664 88138976 -13734193 - AluSx SINE Alu 0 312 1 263 287 79 20 chr13 88139295 88139396 -13733773 + L2 LINE L2 2947 3053 -219 396 298 63 19 chr13 88139507 88139665 -13733504 + MIR SINE MIR 20 184 -78 223 364 74 16 chr13 88139761 88139882 -13733287 + L2 LINE L2 3141 3268 -4 22 0 0 0 chr13 88140062 88140084 -13733085 + AT_rich Low_complexity Low_complexity 1 22 0 583 312 60 84 chr13 88141430 88142318 -13730851 - L2 LINE L2 0 3272 2398 247 224 86 35 chr13 88143418 88143476 -13729693 + L2 LINE L2 3201 3261 -11 231 337 151 20 chr13 88143596 88143795 -13729374 - MIR SINE MIR -18 244 20 1980 123 20 3 chr13 88144767 88145069 -13728100 - AluSg SINE Alu -3 307 1 1020 191 0 0 chr13 88145076 88145249 -13727920 - AluJb SINE Alu -3 309 137 3041 173 6 9 chr13 88145279 88145816 -13727353 - L1MB2 LINE L1 -4 6167 5633 1916 229 50 50 chr13 88146997 88147973 -13725196 - L1MCb LINE L1 -4852 1193 570 1722 265 12 46 chr13 88148098 88148216 -13724953 - L1MCb LINE L1 -5493 552 432 1939 169 14 34 chr13 88148216 88148566 -13724603 - MER61A LTR ERV1 0 343 1 1722 265 12 46 chr13 88148566 88149016 -13724153 - L1MCb LINE L1 -5613 432 3 4462 109 40 95 chr13 88149064 88149888 -13723281 + MER4E LTR ERV1 1 779 0 440 173 0 0 chr13 88149935 88150016 -13723153 + L1MB7 LINE L1 4313 4393 -1753 4282 176 31 70 chr13 88150148 88152051 -13721118 + L1MB7 LINE L1 4342 6184 0 630 320 72 19 chr13 88152059 88152487 -13720682 - L1MEd LINE L1 -5291 828 378 406 317 104 4 chr13 88153341 88153581 -13719588 + L2 LINE L2 1813 2076 -1238 1627 192 0 28 chr13 88153620 88153938 -13719231 - AluJo SINE Alu -3 309 1 210 329 61 24 chr13 88154012 88154094 -13719075 - L2 LINE L2 -43 3229 3145 404 268 140 32 chr13 88154149 88154373 -13718796 - L2 LINE L2 -231 3041 2793 450 305 20 51 chr13 88154375 88154488 -13718681 - L2 LINE L2 -634 2680 2565 2730 192 72 33 chr13 88154488 88155098 -13718071 - MER92B LTR ERV1 0 636 3 450 305 20 51 chr13 88155098 88155279 -13717890 - L2 LINE L2 -749 2565 2395 251 279 47 23 chr13 88155388 88155474 -13717695 + MLT2F LTR ERVL 305 392 -271 1047 216 13 0 chr13 88155493 88155720 -13717449 + Charlie2 DNA MER1_type 2628 2857 -5 268 136 0 0 chr13 88155895 88155939 -13717230 + MLT2B1 LTR ERVL 1 44 -471 * 1319 219 81 23 chr13 88155936 88156246 -13716923 + MLT2B1 LTR ERVL 151 478 -42 322 138 0 46 chr13 88156294 88156359 -13716810 + MLT2B1 LTR ERVL 454 515 0 2135 186 6 6 chr13 88156361 88156726 -13716443 + MLT1A1 LTR MaLR 1 365 0 2086 183 25 0 chr13 88156905 88157261 -13715908 - MLT1A1 LTR MaLR 0 365 1 918 273 90 21 chr13 88158725 88159145 -13714024 - MLT1J2 LTR MaLR 0 446 1 417 277 32 13 chr13 88160419 88160574 -13712595 + MER3 DNA MER1_type 21 131 -78 * 542 265 34 0 chr13 88160571 88160688 -13712481 + MER58B DNA MER1_type 218 338 -3 2387 99 0 0 chr13 88160833 88161135 -13712034 - AluSg SINE Alu -8 302 1 197 210 20 30 chr13 88161556 88161656 -13711513 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 217 280 0 0 chr13 88162907 88162957 -13710212 + MIR SINE MIR 85 134 -128 1220 156 24 5 chr13 88163390 88163601 -13709568 - MER89 LTR ERV1 0 559 345 249 211 18 0 chr13 88163618 88163675 -13709494 - MER5A DNA MER1_type -52 137 80 314 234 43 11 chr13 88163714 88163808 -13709361 - MER89 LTR ERV1 -244 315 219 196 300 50 0 chr13 88164176 88164236 -13708933 - L2 LINE L2 -5 3267 3205 1834 134 29 16 chr13 88164275 88164589 -13708580 + L1MA5A LINE L1 5965 6282 -15 322 131 33 16 chr13 88164756 88164817 -13708352 - L1MB3 LINE L1 -8 6175 6114 1753 259 110 34 chr13 88166413 88167238 -13705931 - L1MB4 LINE L1 -1 6179 5292 357 256 18 55 chr13 88167317 88167536 -13705633 - L1MB4 LINE L1 -2987 3159 2949 339 338 157 7 chr13 88167759 88168052 -13705117 - HAL1 LINE L1 -1029 1478 1142 2374 106 0 0 chr13 88168418 88168721 -13704448 - AluSc SINE Alu -6 303 1 820 194 7 7 chr13 88168790 88168945 -13704224 + FRAM SINE Alu 9 163 -13 5179 93 10 9 chr13 88169192 88169887 -13703282 + L1PA13 LINE L1 5465 6160 -3 343 118 78 0 chr13 88171301 88171352 -13701817 + MLT1B LTR MaLR 334 388 -2 250 302 0 0 chr13 88171650 88171713 -13701456 + MLT1L LTR MaLR 1 63 -552 1688 215 56 63 chr13 88172071 88172709 -13700460 - L1ME2 LINE L1 -277 5887 5254 2173 207 19 13 chr13 88172917 88173385 -13699784 + MER31A LTR ERV1 1 471 -14 2277 87 27 27 chr13 88173386 88173719 -13699450 + L1MA1 LINE L1 5886 6218 -84 1327 107 4 53 chr13 88173719 88173944 -13699225 - L1PA5 LINE L1 0 6154 5941 2482 174 47 4 chr13 88173987 88174457 -13698712 + L1MB4 LINE L1 5681 6170 -10 610 233 21 1 chr13 88174609 88174745 -13698424 - MER5B DNA MER1_type -1 177 48 237 235 29 44 chr13 88174745 88174813 -13698356 + L1MEd LINE L1 656 722 -5397 264 163 47 116 chr13 88175683 88175769 -13697400 + MLT1I LTR MaLR 278 357 -52 678 202 78 10 chr13 88175794 88175987 -13697182 + L1 LINE L1 3164 3369 -2777 395 246 15 0 chr13 88175999 88176129 -13697040 + (TATG)n Simple_repeat Simple_repeat 3 134 0 269 271 42 31 chr13 88176130 88176226 -13696943 + L1MC4 LINE L1 6607 6703 -1339 211 216 0 0 chr13 88176227 88176264 -13696905 + (CATA)n Simple_repeat Simple_repeat 1 37 0 228 213 0 50 chr13 88176264 88176344 -13696825 - L1MC4 LINE L1 -1339 6703 6628 394 103 52 0 chr13 88176345 88176403 -13696766 + MER21A LTR ERV1 14 74 -857 3632 181 41 45 chr13 88176432 88177140 -13696029 + MER21A LTR ERV1 224 928 -3 3141 211 46 17 chr13 88177140 88177947 -13695222 + L1 LINE L1 3362 4191 -1955 2350 70 0 0 chr13 88179207 88179492 -13693677 - AluY SINE Alu -4 307 23 894 148 74 0 chr13 88181019 88181168 -13692001 + MER7A DNA MER2_type 2 159 -187 208 307 24 47 chr13 88181297 88181424 -13691745 + L2 LINE L2 2928 3051 -221 2087 172 13 25 chr13 88182268 88182663 -13690506 - MLT1B LTR MaLR 0 390 1 23 0 0 0 chr13 88183617 88183640 -13689529 + AT_rich Low_complexity Low_complexity 1 23 0 1973 154 73 22 chr13 88184146 88184517 -13688652 - MLT1B LTR MaLR 0 390 1 187 346 63 31 chr13 88185204 88185458 -13687711 - L2 LINE L2 -1105 2209 1948 246 224 79 26 chr13 88186284 88186360 -13686809 + MER58 DNA MER1_type 18 97 -2323 217 217 56 21 chr13 88187849 88187992 -13685177 + (TAA)n Simple_repeat Simple_repeat 2 149 0 2080 86 17 7 chr13 88188677 88188969 -13684200 + AluY SINE Alu 1 295 -16 431 321 165 5 chr13 88188971 88189494 -13683675 + L2 LINE L2 2711 3312 -1 474 259 174 32 chr13 88190298 88190545 -13682624 + L2 LINE L2 3031 3312 -1 815 157 21 7 chr13 88191209 88191349 -13681820 - AluY SINE Alu -166 145 4 3541 181 59 33 chr13 88191356 88192501 -13680668 - L1PA15-16 LINE L1 -3329 3520 2338 843 159 138 37 chr13 88193167 88193356 -13679813 - MER20 DNA MER1_type -11 208 1 2414 101 137 98 chr13 88193521 88194310 -13678859 + pTR5 LTR ERV1 18 2438 0 288 272 127 47 chr13 88194535 88194748 -13678421 - MIR SINE MIR -13 249 20 270 0 0 0 chr13 88195114 88195144 -13678025 + (TG)n Simple_repeat Simple_repeat 2 31 0 284 215 69 77 chr13 88195674 88195804 -13677365 + L1M4 LINE L1 5204 5332 -814 183 24 24 71 chr13 88196030 88196072 -13677097 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 252 246 33 107 chr13 88196974 88197096 -13676073 - MIR SINE MIR -70 192 80 916 250 0 32 chr13 88197130 88197346 -13675823 + MER92B LTR ERV1 71 279 -357 1891 130 6 53 chr13 88197363 88197686 -13675483 - AluSq SINE Alu -5 308 1 302 203 16 0 chr13 88197787 88197851 -13675318 + MER92A LTR ERV1 348 412 0 1261 168 138 3 chr13 88198211 88198680 -13674489 - LTR34 LTR ERV1 0 699 126 1417 124 0 0 chr13 88198688 88198889 -13674280 - L1MA2 LINE L1 -13 7710 7510 21576 156 33 12 chr13 88198890 88202907 -13670262 - L1MA2 LINE L1 -395 7328 3394 1850 168 3 3 chr13 88202907 88203204 -13669965 - AluSx SINE Alu -15 297 1 21576 156 33 12 chr13 88203204 88206283 -13666886 - L1MA2 LINE L1 -4329 3394 79 405 0 0 0 chr13 88206283 88206328 -13666841 + (TG)n Simple_repeat Simple_repeat 2 46 0 21576 156 33 12 chr13 88206328 88206394 -13666775 - L1MA2 LINE L1 -7644 79 16 629 200 59 0 chr13 88206400 88206535 -13666634 - LTR34 LTR ERV1 -547 152 10 2265 161 109 9 chr13 88208546 88208968 -13664201 + MLT2C2 LTR ERVL 1 464 0 2453 80 0 3 chr13 88209352 88209654 -13663515 + AluY SINE Alu 1 301 -10 2891 116 6 58 chr13 88210453 88210938 -13662231 - MER4B LTR ERV1 -36 574 115 724 306 184 16 chr13 88211158 88211599 -13661570 + L2 LINE L2 2346 2860 -454 27482 112 23 53 chr13 88211599 88215360 -13657809 - L1PA8 LINE L1 -1 6171 2742 243 0 0 0 chr13 88215360 88215387 -13657782 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 27482 112 23 53 chr13 88215387 88218039 -13655130 - L1PA8 LINE L1 -3430 2742 12 1571 250 94 29 chr13 88218049 88218561 -13654608 - MLT1E2 LTR MaLR 0 626 82 455 347 10 10 chr13 88218623 88218842 -13654327 + L2 LINE L2 2786 3003 -310 921 252 41 41 chr13 88218854 88219199 -13653970 - LTR16B LTR ERVL -13 451 107 2110 208 20 9 chr13 88219213 88219661 -13653508 + L1MB4 LINE L1 5728 6180 0 366 329 124 9 chr13 88219749 88219974 -13653195 + L2 LINE L2 2979 3229 -84 23 0 0 0 chr13 88221147 88221170 -13651999 + AT_rich Low_complexity Low_complexity 1 23 0 1468 209 97 22 chr13 88222508 88222920 -13650249 - MLT1C LTR MaLR -24 443 1 2604 44 0 3 chr13 88223261 88223559 -13649610 + AluY SINE Alu 1 297 -14 449 300 63 11 chr13 88226558 88226748 -13646421 + MIR SINE MIR 29 228 -34 2181 137 0 3 chr13 88226895 88227208 -13645961 - AluSx SINE Alu 0 312 1 355 264 91 0 chr13 88227977 88228098 -13645071 + MIR SINE MIR 131 262 0 22 0 0 0 chr13 88230384 88230406 -13642763 + AT_rich Low_complexity Low_complexity 1 22 0 1451 216 0 43 chr13 88230907 88231231 -13641938 - AluJo SINE Alu 0 312 3 1964 138 7 14 chr13 88232030 88232327 -13640842 - AluSx SINE Alu -17 295 1 213 39 0 0 chr13 88232555 88232581 -13640588 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 396 312 69 22 chr13 88232835 88233029 -13640140 + MIR SINE MIR 18 220 -42 2096 138 3 0 chr13 88233250 88233546 -13639623 - AluSq SINE Alu -16 297 1 2135 196 30 24 chr13 88234506 88235000 -13638169 - Charlie4a DNA MER1_type -5 503 7 2263 195 42 20 chr13 88235002 88235203 -13637966 + MLT1C LTR MaLR 1 196 -271 246 32 0 0 chr13 88235203 88235234 -13637935 + (CA)n Simple_repeat Simple_repeat 2 32 0 2263 195 42 20 chr13 88235234 88235489 -13637680 + MLT1C LTR MaLR 196 467 0 389 245 101 7 chr13 88235634 88235773 -13637396 + MIR3 SINE MIR 34 185 -23 1903 120 62 0 chr13 88236694 88236968 -13636201 + AluSx SINE Alu 8 298 -14 504 212 8 53 chr13 88237636 88237768 -13635401 + L2 LINE L2 3145 3270 -43 767 183 0 13 chr13 88237779 88238010 -13635159 + GA-rich Low_complexity Low_complexity 1 227 0 656 199 0 11 chr13 88238282 88238463 -13634706 + GA-rich Low_complexity Low_complexity 1 179 0 15535 119 21 21 chr13 88240310 88241143 -13632026 - Tigger1 DNA MER2_type 0 2418 1586 2503 73 0 0 chr13 88241143 88241445 -13631724 - AluY SINE Alu -9 302 1 15535 119 21 21 chr13 88241445 88241878 -13631291 - Tigger1 DNA MER2_type -832 1586 1154 2795 87 11 37 chr13 88241878 88242259 -13630910 - THE1C LTR MaLR 0 375 5 15535 119 21 21 chr13 88242259 88243409 -13629760 - Tigger1 DNA MER2_type -1263 1155 1 198 309 44 0 chr13 88243714 88243782 -13629387 - L2 LINE L2 -31 3241 3171 996 158 47 74 chr13 88243807 88244022 -13629147 - MER3 DNA MER1_type 0 209 1 405 54 0 0 chr13 88245766 88245822 -13627347 + (GA)n Simple_repeat Simple_repeat 1 56 0 1711 101 0 0 chr13 88246336 88246554 -13626615 + AluSc SINE Alu 84 301 -8 40 37 0 0 chr13 88246682 88246736 -13626433 + AT_rich Low_complexity Low_complexity 1 54 0 222 315 139 59 chr13 88247258 88247496 -13625673 + L3b LINE CR1 1256 1512 -71 2457 136 22 8 chr13 88247977 88248346 -13624823 + THE1C LTR MaLR 2 375 0 10348 113 39 19 chr13 88248346 88249889 -13623280 + THE1C-int LTR MaLR 1 1573 -7 2599 116 11 19 chr13 88249894 88250272 -13622897 + THE1C LTR MaLR 1 375 0 282 358 0 0 chr13 88250720 88250815 -13622354 + L2 LINE L2 3180 3274 -39 730 188 37 86 chr13 88251307 88251552 -13621617 + MER33 DNA MER1_type 1 231 -93 46 74 0 0 chr13 88251552 88251647 -13621522 + AT_rich Low_complexity Low_complexity 1 95 0 250 135 0 27 chr13 88251652 88251726 -13621443 + (TTAA)n Simple_repeat Simple_repeat 4 75 0 202 189 38 0 chr13 88251726 88251779 -13621390 + (TA)n Simple_repeat Simple_repeat 2 56 0 243 184 35 11 chr13 88251788 88251875 -13621294 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 296 182 15 0 chr13 88251898 88251964 -13621205 + MER33 DNA MER1_type 252 318 -6 316 241 55 97 chr13 88252215 88252360 -13620809 + MIR3 SINE MIR 41 179 -29 201 150 0 25 chr13 88252931 88252954 -13620215 + (TCTA)n Simple_repeat Simple_repeat 1 24 -15 2209 117 0 0 chr13 88252954 88253254 -13619915 - AluSx SINE Alu -10 302 3 201 150 0 25 chr13 88253254 88253270 -13619899 + (TCTA)n Simple_repeat Simple_repeat 24 39 0 23 33 0 0 chr13 88254543 88254573 -13618596 + AT_rich Low_complexity Low_complexity 1 30 0 237 239 0 0 chr13 88255443 88255489 -13617680 + (TATTG)n Simple_repeat Simple_repeat 4 49 0 818 283 56 80 chr13 88255691 88256453 -13616716 - L1MC/D LINE L1 -419 5823 5103 1829 161 15 3 chr13 88256453 88256777 -13616392 + L1MA5 LINE L1 5971 6298 -2 818 283 56 80 chr13 88256777 88257125 -13616044 - L1MC/D LINE L1 -1139 5103 4748 344 269 158 45 chr13 88257113 88257986 -13615183 - L1MC/D LINE L1 -2857 3289 2318 * 420 235 15 88 chr13 88258379 88258515 -13614654 + L2 LINE L2 3188 3313 0 243 277 15 0 chr13 88259164 88259229 -13613940 + MIR3 SINE MIR 136 201 -7 2352 86 23 0 chr13 88259972 88260276 -13612893 - AluSx SINE Alu -1 311 1 225 184 0 0 chr13 88261143 88261181 -13611988 - L1MC4 LINE L1 -1340 6702 6665 1204 233 8 4 chr13 88261799 88262061 -13611108 - L1PA16 LINE L1 -16 6150 5888 276 304 13 0 chr13 88263753 88263832 -13609337 + MER69 DNA AcHobo 1 80 -2446 382 301 43 18 chr13 88263984 88264147 -13609022 + L2 LINE L2 3147 3313 0 31 68 0 0 chr13 88265530 88265589 -13607580 + AT_rich Low_complexity Low_complexity 1 59 0 3895 186 15 29 chr13 88266959 88267829 -13605340 + L1MB8 LINE L1 5320 6177 -1 288 171 80 34 chr13 88268277 88268365 -13604804 - L1ME4a LINE L1 -71 6050 5959 301 381 0 0 chr13 88268367 88268522 -13604647 - L1ME4a LINE L1 -202 5919 5765 411 266 28 9 chr13 88268604 88268713 -13604456 + MIR SINE MIR 37 147 -115 202 327 0 0 chr13 88269464 88269516 -13603653 + L2 LINE L2 3212 3263 -9 21 0 0 0 chr13 88270412 88270433 -13602736 + AT_rich Low_complexity Low_complexity 1 21 0 237 155 95 71 chr13 88270714 88270798 -13602371 + MLT1J1 LTR MaLR 6 91 -355 267 301 44 69 chr13 88270891 88271094 -13602075 + MLT1J2 LTR MaLR 243 440 -10 824 218 11 23 chr13 88271660 88271834 -13601335 - AluJo SINE Alu -14 298 127 2382 110 0 0 chr13 88272349 88272658 -13600511 - AluSx SINE Alu -3 309 1 1743 137 4 4 chr13 88273117 88273379 -13599790 + AluSx SINE Alu 40 301 -11 202 102 24 75 chr13 88273922 88273970 -13599199 - MIR SINE MIR -61 147 108 321 288 129 53 chr13 88276844 88277014 -13596155 + MIR3 SINE MIR 16 198 -10 2034 121 24 97 chr13 88277018 88277439 -13595730 - MLT1B LTR MaLR 0 390 1 2060 147 42 17 chr13 88277594 88277949 -13595220 + THE1B LTR MaLR 1 364 0 245 207 33 23 chr13 88279005 88279312 -13593857 + (TA)n Simple_repeat Simple_repeat 1 310 0 844 251 129 63 chr13 88279358 88279785 -13593384 - L2 LINE L2 -4 3309 2855 180 328 47 0 chr13 88280058 88280122 -13593047 + L3 LINE CR1 1402 1468 -109 231 274 129 48 chr13 88280854 88280978 -13592191 + L2 LINE L2 2995 3128 -185 391 281 59 37 chr13 88281067 88281202 -13591967 + L2 LINE L2 3176 3313 0 2313 105 73 14 chr13 88282635 88282979 -13590190 + THE1B LTR MaLR 1 364 0 560 78 49 49 chr13 88283177 88283279 -13589890 + L1MB2 LINE L1 6070 6171 0 251 297 55 0 chr13 88283641 88283732 -13589437 + MIR3 SINE MIR 111 206 -2 373 322 30 48 chr13 88285190 88285400 -13587769 + MIR SINE MIR 1 212 -50 252 0 0 0 chr13 88285503 88285531 -13587638 + (TC)n Simple_repeat Simple_repeat 1 28 0 489 239 253 16 chr13 88285536 88285860 -13587309 + MLT1E LTR MaLR 184 592 -1 297 286 143 0 chr13 88286034 88286132 -13587037 + L2 LINE L2 3201 3312 -1 189 0 0 0 chr13 88287391 88287412 -13585757 + (TA)n Simple_repeat Simple_repeat 1 21 0 1589 142 22 6 chr13 88288635 88288943 -13584226 - L1MC1 LINE L1 -196 5966 5655 2359 134 16 0 chr13 88288959 88289339 -13583830 + L1MC1 LINE L1 5948 6333 0 402 285 150 0 chr13 88291973 88292166 -13581003 + MER110 LTR ERV1 255 476 -15 24 0 0 0 chr13 88293032 88293056 -13580113 + AT_rich Low_complexity Low_complexity 1 24 0 412 125 150 12 chr13 88293789 88293869 -13579300 - Charlie2a DNA MER1_type -1293 1569 1479 670 262 113 8 chr13 88294017 88294265 -13578904 - Charlie2a DNA MER1_type -2473 309 36 221 109 18 55 chr13 88296432 88296487 -13576682 + (TAAA)n Simple_repeat Simple_repeat 3 55 0 2274 105 7 0 chr13 88297574 88297868 -13575301 - AluSg SINE Alu -14 296 1 2225 118 3 0 chr13 88298430 88298735 -13574434 - AluSx SINE Alu -6 306 1 1766 156 7 29 chr13 88299632 88299940 -13573229 - AluJb SINE Alu -11 301 1 1657 210 62 90 chr13 88299947 88300738 -13572431 - L1MC5 LINE L1 -540 7421 6653 2873 70 5 3 chr13 88300798 88301184 -13571985 - L1PA7 LINE L1 0 6154 5768 257 352 0 8 chr13 88301706 88301831 -13571338 - HAL1b LINE L1 -850 498 375 25 0 0 0 chr13 88301842 88301867 -13571302 + AT_rich Low_complexity Low_complexity 1 25 0 471 282 47 24 chr13 88302994 88303445 -13569724 - L1M4 LINE L1 -2909 3237 2777 437 276 45 45 chr13 88303644 88303843 -13569326 - MIR SINE MIR -58 204 6 2490 59 0 3 chr13 88304965 88305272 -13567897 + AluY SINE Alu 1 306 -5 191 292 67 42 chr13 88305482 88305602 -13567567 + L2 LINE L2 3187 3309 -4 2300 50 0 4 chr13 88305992 88306291 -13566878 + AluY SINE Alu 3 300 0 1965 114 18 0 chr13 88306480 88306753 -13566416 - AluSx SINE Alu -16 296 19 209 266 47 0 chr13 88307203 88307267 -13565902 + L2 LINE L2 3242 3308 -5 225 0 0 0 chr13 88307368 88307393 -13565776 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 5926 43 3 0 chr13 88307393 88308138 -13565031 - L1PA5 LINE L1 -13 6141 5395 189 0 0 0 chr13 88308449 88308470 -13564699 + (TC)n Simple_repeat Simple_repeat 2 22 0 213 340 107 31 chr13 88308494 88308653 -13564516 + L3 LINE CR1 208 378 -1199 301 269 75 0 chr13 88308930 88309023 -13564146 - MIR SINE MIR -36 226 127 423 345 35 7 chr13 88309219 88309361 -13563808 + L2 LINE L2 3127 3272 0 189 0 0 0 chr13 88311652 88311673 -13561496 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1147 149 6 0 chr13 88311854 88312028 -13561141 + FAM SINE Alu 1 175 0 474 317 64 67 chr13 88312170 88312545 -13560624 + HAL1 LINE L1 1197 1570 -937 305 315 9 27 chr13 88312683 88312794 -13560375 + GA-rich Low_complexity Low_complexity 2 110 0 201 237 0 0 chr13 88313119 88313178 -13559991 + (TA)n Simple_repeat Simple_repeat 1 59 0 2380 102 0 0 chr13 88313214 88313517 -13559652 - AluSx SINE Alu -9 303 1 194 270 0 40 chr13 88313666 88313740 -13559429 + MIR SINE MIR 180 250 -12 2453 72 3 10 chr13 88314534 88314839 -13558330 - AluSp SINE Alu -10 303 1 25 0 0 0 chr13 88315668 88315693 -13557476 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr13 88316340 88316384 -13556785 + AT_rich Low_complexity Low_complexity 1 44 0 383 325 32 24 chr13 88317821 88317947 -13555222 - L2 LINE L2 -41 3231 3105 1001 136 78 0 chr13 88318430 88318584 -13554585 - AluSg/x SINE Alu -12 300 135 795 156 0 16 chr13 88318649 88318777 -13554392 - FLAM_A SINE Alu -6 127 2 974 241 60 43 chr13 88319189 88319587 -13553582 - MLT1C LTR MaLR -3 464 60 276 393 30 7 chr13 88319675 88319810 -13553359 + L2 LINE L2 3133 3270 -2 2483 54 7 0 chr13 88320087 88320384 -13552785 + AluY SINE Alu 1 299 -12 595 291 95 49 chr13 88320925 88321419 -13551750 + L1ME3A LINE L1 5583 6099 -71 249 119 0 0 chr13 88324073 88324115 -13549054 + (CA)n Simple_repeat Simple_repeat 2 43 0 217 271 0 0 chr13 88324228 88324276 -13548893 + MIR SINE MIR 99 146 -62 264 291 88 20 chr13 88324631 88324779 -13548390 + L2 LINE L2 1776 1933 -1381 565 297 35 52 chr13 88325165 88325397 -13547772 - MIR SINE MIR -33 229 2 2926 199 148 113 chr13 88326192 88326724 -13546445 - L1MD3 LINE L1 -17 7978 7466 393 237 59 25 chr13 88326724 88326842 -13546327 - MLT1F1 LTR MaLR -445 122 1 2926 199 148 113 chr13 88326842 88327248 -13545921 - L1MD3 LINE L1 -529 7466 7076 258 32 0 0 chr13 88327248 88327279 -13545890 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2926 199 148 113 chr13 88327279 88327522 -13545647 - L1MD3 LINE L1 -919 7076 6634 399 297 49 14 chr13 88327595 88327825 -13545344 - L1MC4a LINE L1 -1164 6621 6389 873 279 30 10 chr13 88328226 88328524 -13544645 + L1MC4 LINE L1 6604 6907 -1135 2220 104 3 3 chr13 88328826 88329115 -13544054 - AluSg SINE Alu -11 299 11 2077 106 0 0 chr13 88331018 88331293 -13541876 - AluY SINE Alu 0 311 37 188 33 0 33 chr13 88331721 88331751 -13541418 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 276 326 0 12 chr13 88332174 88332260 -13540909 + L2 LINE L2 3186 3270 -43 690 335 37 15 chr13 88332289 88332614 -13540555 + L2 LINE L2 2234 2565 -749 2233 83 7 0 chr13 88332670 88332972 -13540197 + AluSx SINE Alu 6 309 0 258 303 193 9 chr13 88333329 88333438 -13539731 + L2 LINE L2 3142 3270 -2 2129 113 20 13 chr13 88333976 88334278 -13538891 - AluSq SINE Alu -9 304 1 22 0 0 0 chr13 88334278 88334300 -13538869 + AT_rich Low_complexity Low_complexity 1 22 0 1739 211 70 11 chr13 88334820 88335261 -13537908 - MLT1C LTR MaLR 0 467 1 1559 157 8 4 chr13 88335385 88335627 -13537542 - AluJb SINE Alu -30 282 40 4567 185 28 9 chr13 88336494 88336541 -13536628 - L1MB2 LINE L1 -5 6166 6121 1644 200 7 19 chr13 88336541 88336851 -13536318 - AluJo SINE Alu -6 306 1 4567 185 28 9 chr13 88336851 88338439 -13534730 - L1MB2 LINE L1 -50 6121 4501 306 171 171 0 chr13 88338440 88338510 -13534659 - Tigger5 DNA MER2_type 0 2323 2242 * 371 200 0 12 chr13 88338500 88338580 -13534589 + Tigger5 DNA MER2_type 2242 2320 -3 317 202 0 124 chr13 88338580 88338631 -13534538 - Tigger5 DNA MER2_type -2245 78 41 2052 139 7 7 chr13 88338631 88338933 -13534236 + AluSx SINE Alu 2 303 -9 317 202 0 124 chr13 88338933 88338969 -13534200 - Tigger5 DNA MER2_type -2282 41 2 497 175 48 0 chr13 88338969 88339095 -13534074 - L1MB2 LINE L1 -1644 4502 4371 448 336 139 41 chr13 88339105 88340290 -13532879 + L2 LINE L2 1944 3243 -29 791 119 0 22 chr13 88340422 88340556 -13532613 - L1PA8 LINE L1 0 6172 6042 203 350 33 42 chr13 88340758 88340878 -13532291 + MIR SINE MIR 23 141 -121 1279 200 110 18 chr13 88341174 88341618 -13531551 - MLT2B1 LTR ERVL 0 554 3 30 27 0 0 chr13 88342266 88342303 -13530866 + AT_rich Low_complexity Low_complexity 1 37 0 255 175 58 18 chr13 88342351 88342522 -13530647 + (TA)n Simple_repeat Simple_repeat 2 179 0 2338 51 0 27 chr13 88343650 88343942 -13529227 - AluY SINE Alu -27 284 1 1001 238 29 5 chr13 88344436 88344642 -13528527 + MIR SINE MIR 2 212 -50 27 0 0 0 chr13 88346428 88346455 -13526714 + AT_rich Low_complexity Low_complexity 1 27 0 244 332 45 20 chr13 88347711 88347910 -13525259 + L1ME LINE L1 5617 5820 -301 2266 207 56 15 chr13 88347915 88348436 -13524733 + MLT1F LTR MaLR 1 542 0 207 0 0 0 chr13 88348485 88348508 -13524661 + (TA)n Simple_repeat Simple_repeat 2 24 0 23 68 0 0 chr13 88348682 88348726 -13524443 + AT_rich Low_complexity Low_complexity 1 44 0 2744 182 56 15 chr13 88349461 88350072 -13523097 + MER67C LTR ERV1 74 709 -1 1017 240 122 29 chr13 88350812 88351254 -13521915 - MLT1D LTR MaLR -7 498 16 1790 143 37 30 chr13 88351280 88351580 -13521589 - AluJb SINE Alu -10 302 1 1700 153 42 29 chr13 88352540 88352848 -13520321 + AluJb SINE Alu 1 312 0 2613 46 0 3 chr13 88352927 88353233 -13519936 + AluY SINE Alu 1 305 -6 23 0 0 0 chr13 88353510 88353533 -13519636 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr13 88354530 88354555 -13518614 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1949 125 4 0 chr13 88354555 88354834 -13518335 - AluSx SINE Alu -32 280 1 33 43 0 0 chr13 88357695 88357742 -13515427 + AT_rich Low_complexity Low_complexity 1 47 0 551 172 0 0 chr13 88357812 88358053 -13515116 + L1MC4a LINE L1 4896 5152 -994 576 117 0 39 chr13 88358053 88358119 -13515050 + L1MA7 LINE L1 6193 6255 -36 1719 165 18 21 chr13 88358119 88358458 -13514711 + MER44D DNA MER2_type 1 608 -1 576 117 0 39 chr13 88358458 88358494 -13514675 + L1MA7 LINE L1 6255 6291 0 551 172 0 0 chr13 88358494 88358609 -13514560 + L1MC4a LINE L1 5152 5271 -875 401 306 106 31 chr13 88358639 88358885 -13514284 + L1MC4a LINE L1 5314 5540 -622 347 245 165 21 chr13 88358885 88359073 -13514096 - MER58C DNA MER1_type 0 215 1 401 306 106 31 chr13 88359073 88359393 -13513776 + L1MC4a LINE L1 5540 5810 -352 249 159 0 0 chr13 88359622 88359666 -13513503 + (TA)n Simple_repeat Simple_repeat 1 44 0 256 257 0 48 chr13 88359673 88359766 -13513403 - L1MC4 LINE L1 -1339 6703 6614 2149 117 3 3 chr13 88359766 88360056 -13513113 - AluSq SINE Alu -23 290 1 256 257 0 48 chr13 88360056 88360067 -13513102 - L1MC4 LINE L1 -1428 6614 6604 498 187 102 24 chr13 88360101 88360267 -13512902 + MER104 DNA MER2_type 1 179 -1 23 33 0 0 chr13 88360430 88360460 -13512709 + AT_rich Low_complexity Low_complexity 1 30 0 276 374 12 48 chr13 88360555 88360721 -13512448 - MIR SINE MIR -83 179 20 26 0 0 0 chr13 88361081 88361107 -13512062 + AT_rich Low_complexity Low_complexity 1 26 0 230 178 22 0 chr13 88361436 88361481 -13511688 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 331 290 110 32 chr13 88361968 88362123 -13511046 + MIR SINE MIR 20 186 -76 201 94 0 0 chr13 88363731 88363763 -13509406 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 413 314 0 0 chr13 88364181 88364302 -13508867 - MIR SINE MIR -122 140 20 272 30 0 0 chr13 88364383 88364416 -13508753 - U2 snRNA snRNA -154 34 2 2373 107 0 0 chr13 88365788 88366096 -13507073 + AluSx SINE Alu 1 308 -4 234 311 27 40 chr13 88366860 88367008 -13506161 - HAL1b LINE L1 -457 891 746 245 369 0 0 chr13 88367452 88367536 -13505633 - HAL1 LINE L1 -593 1914 1831 278 266 13 13 chr13 88368341 88368420 -13504749 + CT-rich Low_complexity Low_complexity 3 81 0 7213 46 5 0 chr13 88369187 88370363 -13502806 + L1PA4 LINE L1 4971 6150 -5 4133 23 2 0 chr13 88370383 88370863 -13502306 + L1PA5 LINE L1 5660 6140 -14 1299 267 74 25 chr13 88370990 88371435 -13501734 + L2 LINE L2 2062 2528 -786 1467 157 58 16 chr13 88372229 88372704 -13500465 - L1MB7 LINE L1 -1 6183 5662 2352 94 0 3 chr13 88374286 88374583 -13498586 - AluSq SINE Alu -17 296 1 279 339 27 55 chr13 88375965 88376148 -13497021 - MIR SINE MIR -65 197 20 43 35 0 0 chr13 88376403 88376460 -13496709 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr13 88377032 88377054 -13496115 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr13 88377496 88377525 -13495644 + AT_rich Low_complexity Low_complexity 1 29 0 201 74 0 0 chr13 88377794 88377821 -13495348 + (TA)n Simple_repeat Simple_repeat 1 27 0 608 316 52 33 chr13 88377898 88378325 -13494844 - L1ME4a LINE L1 -196 5925 5491 2154 127 76 144 chr13 88378626 88379531 -13493638 + LTR12 LTR ERV1 1 714 0 2344 147 32 15 chr13 88379630 88380032 -13493137 + MSTB LTR MaLR 1 409 -17 27 62 0 0 chr13 88380559 88380607 -13492562 + AT_rich Low_complexity Low_complexity 1 48 0 367 316 38 8 chr13 88381834 88381967 -13491202 - MIR SINE MIR -8 254 118 189 0 0 0 chr13 88382717 88382738 -13490431 + (TA)n Simple_repeat Simple_repeat 2 22 0 25 31 0 0 chr13 88383052 88383084 -13490085 + AT_rich Low_complexity Low_complexity 1 32 0 7280 38 6 2 chr13 88383901 88385513 -13487656 + L1PA5 LINE L1 4527 6141 -13 332 242 57 16 chr13 88385620 88385744 -13487425 + L1ME LINE L1 58 186 -5933 335 299 75 61 chr13 88385754 88385968 -13487201 + L1ME LINE L1 220 436 -5683 320 288 45 23 chr13 88385968 88386145 -13487024 + L1ME LINE L1 4818 4998 -1131 628 285 28 30 chr13 88386152 88386423 -13486746 + L1ME LINE L1 5453 5699 -454 1244 240 59 36 chr13 88386431 88386750 -13486419 - MLT1E3 LTR MaLR 0 624 314 1048 53 0 0 chr13 88386750 88386910 -13486259 - L1PA5 LINE L1 0 6154 6018 1244 240 59 36 chr13 88386910 88387157 -13486012 - MLT1E3 LTR MaLR -310 314 1 277 309 0 0 chr13 88387236 88387320 -13485849 + L1ME LINE L1 5786 5869 -284 322 206 10 78 chr13 88389111 88389213 -13483956 + MLT1L LTR MaLR 181 275 -340 1525 202 71 55 chr13 88389333 88389581 -13483588 - MLT1C LTR MaLR 0 467 207 2641 138 21 5 chr13 88389581 88390000 -13483169 + MSTA LTR MaLR 3 428 0 1525 202 71 55 chr13 88390000 88390202 -13482967 - MLT1C LTR MaLR -260 207 10 286 211 92 55 chr13 88390229 88390338 -13482831 + MLT1K LTR MaLR 458 570 -18 180 321 89 45 chr13 88390894 88391006 -13482163 + MIR SINE MIR 53 169 -93 237 297 95 0 chr13 88391008 88391082 -13482087 - MIR SINE MIR -112 150 70 237 204 20 0 chr13 88392153 88392202 -13480967 + MER46C DNA MER2_type 2 51 -287 1680 108 5 0 chr13 88392261 88392484 -13480685 - AluSc SINE Alu -85 224 1 35656 76 3 1 chr13 88392484 88397135 -13476034 + HERVFH19I LTR ERV1 3058 7719 0 2042 113 178 12 chr13 88397135 88397552 -13475617 + LTR19A LTR ERV1 1 486 0 744 232 119 43 chr13 88397687 88398244 -13474925 + MER76 LTR ERV 3 658 -30 2546 167 22 7 chr13 88398387 88398836 -13474333 + LTR32 LTR ERVL 16 471 0 2278 107 33 38 chr13 88399432 88399798 -13473371 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr13 88400091 88400121 -13473048 + AT_rich Low_complexity Low_complexity 1 30 0 1514 163 59 42 chr13 88400965 88401320 -13471849 + MER46B DNA MER2_type 1 236 0 519 291 120 53 chr13 88401439 88401872 -13471297 + MLT1J LTR MaLR 25 486 -25 322 294 0 10 chr13 88401889 88401939 -13471230 + (TA)n Simple_repeat Simple_repeat 2 51 -51 1868 147 88 3 chr13 88401939 88402259 -13470910 + MER7A DNA MER2_type 2 346 0 322 294 0 10 chr13 88402259 88402310 -13470859 + (TA)n Simple_repeat Simple_repeat 51 102 0 265 306 56 0 chr13 88402364 88402436 -13470733 - L2 LINE L2 0 3272 3197 528 203 33 20 chr13 88402559 88402712 -13470457 - MER104 DNA Tc2 -25 155 1 21 36 0 0 chr13 88402814 88402842 -13470327 + AT_rich Low_complexity Low_complexity 1 28 0 344 288 41 34 chr13 88403126 88403272 -13469897 + MLT1K LTR MaLR 333 479 -109 2549 58 0 3 chr13 88403506 88403814 -13469355 - AluY SINE Alu -4 307 1 296 329 157 51 chr13 88404359 88404408 -13468761 + MIR SINE MIR 6 48 -214 2509 63 0 0 chr13 88404408 88404708 -13468461 - AluY SINE Alu -11 300 1 296 329 157 51 chr13 88404708 88404874 -13468295 + MIR SINE MIR 48 244 -18 1275 302 42 13 chr13 88404955 88405408 -13467761 + L2 LINE L2 2848 3313 0 518 25 50 0 chr13 88405878 88405958 -13467211 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 199 161 36 0 chr13 88406118 88406174 -13466995 + (TA)n Simple_repeat Simple_repeat 1 58 0 271 273 86 23 chr13 88406635 88406763 -13466406 + L1ME LINE L1 5564 5699 -422 7012 17 0 1 chr13 88407165 88408045 -13465124 + L1PA3 LINE L1 5326 6204 0 28 0 0 0 chr13 88408710 88408738 -13464431 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 88409532 88409553 -13463616 + AT_rich Low_complexity Low_complexity 1 21 0 288 264 75 99 chr13 88410532 88410997 -13462172 - L1MC4a LINE L1 -1898 5893 5440 189 121 0 0 chr13 88411400 88411433 -13461736 + (TC)n Simple_repeat Simple_repeat 2 34 0 230 233 97 19 chr13 88411481 88411584 -13461585 - L1MC4a LINE L1 -1812 4317 4207 370 324 124 28 chr13 88411953 88412308 -13460861 - L1MC4a LINE L1 -2379 3750 3362 375 334 92 23 chr13 88412346 88412508 -13460661 - L1MC4a LINE L1 -5510 609 460 2303 99 0 13 chr13 88412508 88412811 -13460358 - AluSx SINE Alu -13 299 1 375 334 92 23 chr13 88412811 88413127 -13460042 - L1MC4a LINE L1 -5659 460 98 587 356 62 46 chr13 88413714 88414343 -13458826 - HAL1b LINE L1 -639 709 71 207 0 0 0 chr13 88414454 88414477 -13458692 + (CAA)n Simple_repeat Simple_repeat 3 25 0 645 206 41 70 chr13 88416456 88416699 -13456470 - MER106A DNA MER1_type 0 236 1 1870 119 109 36 chr13 88416733 88417259 -13455910 + MER51A LTR ERV1 1 634 0 26 0 0 0 chr13 88418696 88418722 -13454447 + AT_rich Low_complexity Low_complexity 1 26 0 3501 91 12 26 chr13 88418729 88419235 -13453934 - L1PA10 LINE L1 -15 6153 5655 849 291 117 32 chr13 88419462 88419956 -13453213 + MER77 LTR ERV1 66 601 -4 232 363 10 20 chr13 88420051 88420153 -13453016 + MER21B LTR ERV1 606 706 -157 690 318 157 13 chr13 88420447 88421873 -13451296 + L1ME LINE L1 3591 5221 -925 381 318 64 40 chr13 88422045 88422341 -13450828 + L1ME LINE L1 5470 5772 -398 30 77 0 0 chr13 88424045 88424110 -13449059 + AT_rich Low_complexity Low_complexity 1 65 0 188 160 0 80 chr13 88424586 88424636 -13448533 + MIR SINE MIR 173 218 -44 23 54 0 0 chr13 88424705 88424742 -13448427 + AT_rich Low_complexity Low_complexity 1 37 0 560 224 122 0 chr13 88424798 88424954 -13448215 + MER58B DNA MER1_type 167 341 0 1851 151 41 0 chr13 88425169 88425461 -13447708 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr13 88425590 88425611 -13447558 + AT_rich Low_complexity Low_complexity 1 21 0 2843 7 0 0 chr13 88425678 88425985 -13447184 + AluYa5 SINE Alu 1 307 -4 488 231 33 0 chr13 88425989 88426110 -13447059 - L1MA10 LINE L1 -30 6304 6180 27 0 0 0 chr13 88426213 88426240 -13446929 + AT_rich Low_complexity Low_complexity 1 27 0 395 329 184 32 chr13 88426706 88427766 -13445403 + L2 LINE L2 215 1435 -1879 2226 101 0 3 chr13 88427834 88428131 -13445038 - AluSg SINE Alu -14 296 1 23 0 0 0 chr13 88428899 88428922 -13444247 + AT_rich Low_complexity Low_complexity 1 23 0 500 234 222 0 chr13 88430173 88430344 -13442825 - MIR SINE MIR -25 237 29 2250 88 0 3 chr13 88430392 88430702 -13442467 - AluY SINE Alu 0 309 1 276 130 0 0 chr13 88430801 88430847 -13442322 + (TA)n Simple_repeat Simple_repeat 1 46 0 8641 130 25 3 chr13 88430851 88433277 -13439892 - L1MA1 LINE L1 -29 6273 3791 742 253 99 0 chr13 88433832 88434034 -13439135 + MIR SINE MIR 31 252 -10 27 62 0 0 chr13 88435059 88435107 -13438062 + AT_rich Low_complexity Low_complexity 1 48 0 200 333 0 0 chr13 88435240 88435312 -13437857 + (TATATG)n Simple_repeat Simple_repeat 2 73 0 691 155 199 25 chr13 88435544 88435705 -13437464 + MER5A DNA MER1_type 1 189 0 235 354 61 0 chr13 88435705 88435785 -13437384 + L3 LINE CR1 1491 1575 -2 1084 225 5 0 chr13 88436016 88436229 -13436940 + MLT1D LTR MaLR 292 505 0 546 281 31 40 chr13 88436656 88436880 -13436289 - MIR SINE MIR 0 262 41 220 301 205 32 chr13 88437054 88437210 -13435959 + MIR SINE MIR 10 192 -70 398 309 105 49 chr13 88438540 88438951 -13434218 + MLT1H LTR MaLR 107 540 -9 310 287 74 8 chr13 88438959 88439081 -13434088 + MLT1J1 LTR MaLR 26 155 -291 581 217 0 54 chr13 88439297 88439426 -13433743 - MER63 DNA MER1_type -262 799 678 270 0 0 0 chr13 88440280 88440310 -13432859 + (TA)n Simple_repeat Simple_repeat 2 31 0 27 92 0 0 chr13 88442332 88442408 -13430761 + AT_rich Low_complexity Low_complexity 1 76 0 335 230 9 0 chr13 88442660 88442773 -13430396 + (TG)n Simple_repeat Simple_repeat 1 114 0 252 212 0 0 chr13 88442823 88442889 -13430280 + (TG)n Simple_repeat Simple_repeat 2 67 0 358 241 6 6 chr13 88442952 88443114 -13430055 + (TG)n Simple_repeat Simple_repeat 1 162 0 319 254 6 6 chr13 88443146 88443323 -13429846 + (TG)n Simple_repeat Simple_repeat 2 178 0 626 316 71 34 chr13 88444692 88444739 -13428430 + L1ME LINE L1 5304 5348 -816 1955 62 0 0 chr13 88444739 88444981 -13428188 + AluY SINE Alu 68 309 -2 626 316 71 34 chr13 88444981 88445422 -13427747 + L1ME LINE L1 5348 5822 -342 650 225 157 0 chr13 88445442 88445633 -13427536 + MIR SINE MIR 42 262 0 2041 73 4 4 chr13 88446901 88447161 -13426008 + AluSc SINE Alu 50 309 0 310 206 0 118 chr13 88448032 88448134 -13425035 - L1MC4 LINE L1 -1339 6703 6614 204 188 24 24 chr13 88448715 88448800 -13424369 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 491 257 27 20 chr13 88448962 88449110 -13424059 - Charlie8 DNA MER1_type -2198 219 71 2396 98 0 0 chr13 88449311 88449618 -13423551 + AluSg SINE Alu 1 307 -3 23 0 0 0 chr13 88450198 88450221 -13422948 + AT_rich Low_complexity Low_complexity 1 23 0 2624 0 0 3 chr13 88450603 88450948 -13422221 + AluYa5 SINE Alu 1 344 0 25 65 0 0 chr13 88451108 88451154 -13422015 + AT_rich Low_complexity Low_complexity 1 46 0 2072 114 0 0 chr13 88451951 88452224 -13420945 - AluSx SINE Alu -15 297 25 340 262 127 56 chr13 88452365 88452491 -13420678 + L2 LINE L2 3137 3271 -1 204 217 0 0 chr13 88452556 88452602 -13420567 + (TAG)n Simple_repeat Simple_repeat 1 46 0 5351 161 25 55 chr13 88452734 88453888 -13419281 + L1MA9 LINE L1 5181 6310 -2 241 218 90 90 chr13 88455275 88455408 -13417761 - MIR SINE MIR -1 261 129 1492 156 0 40 chr13 88456358 88456634 -13416535 - AluSx SINE Alu -8 304 40 601 265 45 65 chr13 88457449 88457740 -13415429 + MLT1J LTR MaLR 227 511 0 306 0 0 0 chr13 88457932 88457966 -13415203 + (CA)n Simple_repeat Simple_repeat 2 35 0 604 274 109 32 chr13 88457992 88458339 -13414830 - L1ME4a LINE L1 -236 5885 5512 575 329 22 15 chr13 88458457 88458662 -13414507 + MIR SINE MIR 12 222 -40 246 62 0 0 chr13 88460593 88460625 -13412544 + (TA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr13 88461912 88461933 -13411236 + AT_rich Low_complexity Low_complexity 1 21 0 217 174 0 22 chr13 88462045 88462091 -13411078 + A-rich Low_complexity Low_complexity 6 50 0 343 299 0 78 chr13 88462482 88462604 -13410565 - MER5B DNA MER1_type -2 176 67 1794 195 0 6 chr13 88462604 88462917 -13410252 - AluJo SINE Alu -1 311 1 343 299 0 78 chr13 88462917 88462948 -13410221 - MER5B DNA MER1_type -111 67 35 399 279 184 0 chr13 88464125 88464261 -13408908 - MIR SINE MIR -74 188 28 346 247 93 0 chr13 88464297 88464394 -13408775 + MIR SINE MIR 105 210 -52 251 226 151 28 chr13 88465086 88465192 -13407977 - MIR SINE MIR -95 167 49 1834 104 4 0 chr13 88465261 88465539 -13407630 + L1MA4A LINE L1 6016 6294 -9 213 39 0 0 chr13 88465624 88465650 -13407519 + (T)n Simple_repeat Simple_repeat 1 26 0 3975 65 50 2 chr13 88465650 88466171 -13406998 - MER11D LTR ERVK -96 801 256 1986 105 4 4 chr13 88469395 88469661 -13403508 - AluSx SINE Alu -18 294 29 634 258 79 11 chr13 88469764 88469954 -13403215 - MER20 DNA MER1_type -15 204 2 206 278 44 44 chr13 88469968 88470058 -13403111 + L2 LINE L2 3183 3272 0 282 29 0 0 chr13 88470490 88470525 -13402644 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 867 123 13 7 chr13 88471353 88471508 -13401661 + (TTCC)n Simple_repeat Simple_repeat 4 159 0 1073 173 0 0 chr13 88471528 88471701 -13401468 - AluSg/x SINE Alu -2 307 135 2260 119 0 0 chr13 88472528 88472838 -13400331 + AluSg SINE Alu 1 310 0 198 0 0 0 chr13 88473393 88473415 -13399754 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr13 88473694 88473716 -13399453 + AT_rich Low_complexity Low_complexity 1 22 0 442 216 10 10 chr13 88474191 88474288 -13398881 - L1MCa LINE L1 -6310 116 20 21 57 0 0 chr13 88475056 88475091 -13398078 + AT_rich Low_complexity Low_complexity 1 35 0 210 111 0 44 chr13 88475252 88475297 -13397872 + (TTTTTA)n Simple_repeat Simple_repeat 1 43 0 1444 81 0 10 chr13 88475349 88475547 -13397622 - L1PA8 LINE L1 -3 6169 5974 1480 163 79 11 chr13 88475548 88475825 -13397344 - AluJb SINE Alu -16 296 1 2258 100 0 3 chr13 88475833 88476142 -13397027 - AluSc SINE Alu -1 308 1 372 238 57 19 chr13 88476854 88476959 -13396210 + L2 LINE L2 3168 3276 -37 251 223 233 10 chr13 88477789 88477892 -13395277 - MIR SINE MIR -66 196 71 241 339 56 28 chr13 88478464 88478644 -13394525 - MIR SINE MIR -74 188 4 456 282 124 60 chr13 88479314 88479700 -13393469 + MLT1J1 LTR MaLR 36 446 0 1440 289 115 16 chr13 88480954 88481856 -13391313 + L2 LINE L2 2319 3313 0 15939 19 1 0 chr13 88481998 88483876 -13389293 - L1PA4 LINE L1 -1544 4602 2724 7384 31 14 0 chr13 88483876 88485412 -13387757 + L1PA4 LINE L1 4598 6155 0 26 74 0 0 chr13 88486144 88486198 -13386971 + AT_rich Low_complexity Low_complexity 1 54 0 221 283 217 9 chr13 88486496 88486602 -13386567 + L3 LINE CR1 417 544 -1033 23 54 0 0 chr13 88488306 88488343 -13384826 + AT_rich Low_complexity Low_complexity 1 37 0 1765 199 21 0 chr13 88489170 88489496 -13383673 - MER52A LTR ERV1 0 1755 1423 21 36 0 0 chr13 88490950 88490978 -13382191 + AT_rich Low_complexity Low_complexity 1 28 0 333 262 114 55 chr13 88492333 88492668 -13380501 + L1ME LINE L1 5292 5652 -518 207 222 32 16 chr13 88493660 88493723 -13379446 + MIR3 SINE MIR 144 207 -1 2335 95 3 3 chr13 88493796 88494100 -13379069 - AluSx SINE Alu -8 304 1 4514 33 7 0 chr13 88495544 88496086 -13377083 - L1P LINE L1 -1671 4475 3930 255 240 20 0 chr13 88497368 88497418 -13375751 + L2 LINE L2 3249 3299 -14 210 71 0 0 chr13 88497419 88497447 -13375722 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 209 338 86 43 chr13 88497621 88497760 -13375409 + MIR SINE MIR 3 147 -115 977 253 126 52 chr13 88497772 88498234 -13374935 - MLT1H LTR MaLR -13 536 41 1023 198 37 14 chr13 88498959 88499176 -13373993 - MER58A DNA MER1_type -2 222 1 1056 184 0 0 chr13 88499403 88499582 -13373587 - AluJb SINE Alu -14 298 120 21 0 0 0 chr13 88499732 88499753 -13373416 + AT_rich Low_complexity Low_complexity 1 21 0 396 232 119 0 chr13 88499825 88499953 -13373216 - MIR SINE MIR -74 188 46 222 284 74 25 chr13 88500069 88500150 -13373019 + MIR SINE MIR 110 194 -68 22 88 0 0 chr13 88500718 88500775 -13372394 + AT_rich Low_complexity Low_complexity 1 57 0 2183 104 7 0 chr13 88500845 88501133 -13372036 + AluSx SINE Alu 1 290 -22 200 35 35 0 chr13 88501134 88501163 -13372006 + (TA)n Simple_repeat Simple_repeat 1 30 0 686 335 106 65 chr13 88501295 88501741 -13371428 + L1MEd LINE L1 98 524 -5595 2440 94 10 60 chr13 88501741 88502124 -13371045 + THE1B LTR MaLR 1 364 0 686 335 106 65 chr13 88502124 88502610 -13370559 + L1MEd LINE L1 524 1068 -5051 364 271 43 42 chr13 88503157 88503454 -13369715 + L1MEd LINE L1 1054 1388 -4865 228 67 0 0 chr13 88503485 88503515 -13369654 + (A)n Simple_repeat Simple_repeat 1 30 0 180 200 0 0 chr13 88505251 88505291 -13367878 + (CA)n Simple_repeat Simple_repeat 2 41 0 492 273 62 16 chr13 88505754 88505948 -13367221 + L1ME LINE L1 5595 5762 -359 224 321 0 0 chr13 88505953 88506006 -13367163 + polypurine Low_complexity Low_complexity 4 56 0 2128 109 3 0 chr13 88508523 88508853 -13364316 - AluSx SINE Alu 0 331 1 336 320 78 7 chr13 88509138 88509291 -13363878 + MIR SINE MIR 87 250 -12 2123 101 0 4 chr13 88511234 88511537 -13361632 + AluY SINE Alu 4 305 0 269 308 100 8 chr13 88511740 88511860 -13361309 - MIR SINE MIR -14 248 118 613 300 25 12 chr13 88512627 88512867 -13360302 - HAL1b LINE L1 -861 487 245 1688 223 3 14 chr13 88513064 88513431 -13359738 + MLT1A1 LTR MaLR 1 363 -2 477 244 45 57 chr13 88513491 88513667 -13359502 - MER5B DNA MER1_type 0 178 5 22 35 0 0 chr13 88514148 88514177 -13358992 + AT_rich Low_complexity Low_complexity 1 29 0 300 309 65 0 chr13 88514843 88514966 -13358203 - L2 LINE L2 -10 3303 3173 781 211 0 0 chr13 88516832 88516974 -13356195 + FRAM SINE Alu 1 142 -34 399 21 0 0 chr13 88516986 88517034 -13356135 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 306 0 0 0 chr13 88517051 88517085 -13356084 + (TA)n Simple_repeat Simple_repeat 2 35 0 201 74 0 0 chr13 88517087 88517114 -13356055 + (GA)n Simple_repeat Simple_repeat 2 28 0 285 29 0 0 chr13 88517368 88517402 -13355767 + (TC)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr13 88517401 88517426 -13355743 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 305 349 147 18 chr13 88517829 88518101 -13355068 + L3b LINE CR1 1161 1467 -116 234 0 0 0 chr13 88518454 88518480 -13354689 + (CA)n Simple_repeat Simple_repeat 2 27 0 579 319 16 44 chr13 88518915 88519163 -13354006 + MIR SINE MIR 1 241 -21 203 287 70 70 chr13 88519289 88519404 -13353765 - MIR3 SINE MIR -11 197 83 392 340 168 5 chr13 88519512 88519721 -13353448 + MIR SINE MIR 20 262 0 352 311 61 20 chr13 88519766 88519914 -13353255 + MIR SINE MIR 108 261 -1 27 0 0 0 chr13 88519915 88519942 -13353227 + AT_rich Low_complexity Low_complexity 1 27 0 744 276 38 23 chr13 88520656 88520920 -13352249 + MLT1D LTR MaLR 1 268 -237 1386 208 83 37 chr13 88521929 88522296 -13350873 + MLT2D LTR ERVL 1 480 -40 206 128 26 0 chr13 88522322 88522361 -13350808 + (TA)n Simple_repeat Simple_repeat 2 41 0 213 39 0 0 chr13 88522421 88522447 -13350722 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 260 291 126 8 chr13 88523244 88523371 -13349798 - L2 LINE L2 0 3313 3172 285 109 0 0 chr13 88523619 88523665 -13349504 + (GA)n Simple_repeat Simple_repeat 1 46 0 2001 128 3 0 chr13 88525235 88525537 -13347632 + AluSx SINE Alu 1 303 0 2222 159 13 18 chr13 88526035 88526424 -13346745 + MSTB LTR MaLR 1 387 -39 20860 107 13 7 chr13 88526424 88530367 -13342802 + L1PA8 LINE L1 2192 6158 -14 612 242 70 37 chr13 88530578 88530793 -13342376 - L1MC4 LINE L1 -533 7509 7288 298 352 186 0 chr13 88530957 88531102 -13342067 + MER5A DNA MER1_type 11 182 -7 827 144 40 0 chr13 88531219 88531392 -13341777 + CT-rich Low_complexity Low_complexity 1 180 0 198 0 0 0 chr13 88531402 88531424 -13341745 + (TTCC)n Simple_repeat Simple_repeat 2 23 0 1719 163 3 11 chr13 88531424 88531706 -13341463 - AluSx SINE Alu -32 280 1 264 163 0 0 chr13 88531706 88531749 -13341420 + MSTB LTR MaLR 382 424 -2 412 308 79 2 chr13 88532730 88532916 -13340253 + MIR SINE MIR 16 212 -50 23 54 0 0 chr13 88533159 88533196 -13339973 + AT_rich Low_complexity Low_complexity 1 37 0 8607 162 16 7 chr13 88533584 88536048 -13337121 + L1MA4 LINE L1 3809 6292 -8 2553 126 0 0 chr13 88536210 88536583 -13336586 - L1PA15 LINE L1 0 6165 5793 30 59 0 0 chr13 88536663 88536714 -13336455 + AT_rich Low_complexity Low_complexity 1 51 0 325 331 46 23 chr13 88536832 88536962 -13336207 + MER94 DNA DNA 2 134 0 36 33 0 16 chr13 88537792 88537818 -13335351 + AT_rich Low_complexity Low_complexity 1 26 -34 2164 170 23 38 chr13 88537818 88538294 -13334875 - L1MA7 LINE L1 -6 6285 5817 36 33 0 16 chr13 88538294 88538328 -13334841 + AT_rich Low_complexity Low_complexity 26 60 0 257 50 0 25 chr13 88539160 88539200 -13333969 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 4021 26 0 0 chr13 88539200 88539664 -13333505 - L1PA3 LINE L1 -24 6131 5668 2085 136 0 0 chr13 88539897 88540199 -13332970 + AluSx SINE Alu 1 302 -10 303 28 0 0 chr13 88540540 88540576 -13332593 + (TG)n Simple_repeat Simple_repeat 1 36 0 224 398 41 10 chr13 88541448 88541546 -13331623 - L2 LINE L2 -3 3269 3169 382 269 11 11 chr13 88541804 88541897 -13331272 + L1MEd LINE L1 246 338 -5781 377 281 94 21 chr13 88541920 88542112 -13331057 + L1M4 LINE L1 4767 4972 -1174 320 241 23 0 chr13 88542119 88542137 -13331032 - L1MA10 LINE L1 -3 6331 6314 1945 246 46 16 chr13 88542137 88542685 -13330484 - L1ME1 LINE L1 -13 6153 5590 946 191 0 12 chr13 88542688 88542856 -13330313 - FRAM SINE Alu 0 166 1 23 0 0 0 chr13 88542867 88542890 -13330279 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 88543361 88543382 -13329787 + AT_rich Low_complexity Low_complexity 1 21 0 2797 262 85 41 chr13 88543493 88545082 -13328087 + L1M4 LINE L1 2398 4106 -2040 2102 115 0 34 chr13 88545638 88545960 -13327209 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 88546002 88546025 -13327144 + AT_rich Low_complexity Low_complexity 1 23 0 206 250 16 62 chr13 88546157 88546221 -13326948 - L2 LINE L2 -86 3227 3167 269 345 28 21 chr13 88546580 88546722 -13326447 - MIR SINE MIR 0 262 120 1176 96 0 0 chr13 88547734 88547919 -13325250 + AluSc SINE Alu 125 309 0 571 170 36 0 chr13 88549078 88549190 -13323979 + L1MB1 LINE L1 6045 6160 -8 204 97 0 0 chr13 88549190 88549221 -13323948 + (CAAAT)n Simple_repeat Simple_repeat 3 33 0 571 141 41 16 chr13 88549629 88549750 -13323419 + L1MA5 LINE L1 6175 6298 -2 23 0 0 0 chr13 88549797 88549820 -13323349 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr13 88549920 88549942 -13323227 + AT_rich Low_complexity Low_complexity 1 22 0 5783 53 25 1 chr13 88550483 88551232 -13321937 + L1PA7 LINE L1 5385 6151 -3 1069 237 93 44 chr13 88551232 88551614 -13321555 + L1P LINE L1 2432 2832 -3314 324 0 0 0 chr13 88552231 88552267 -13320902 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 184 0 0 chr13 88552956 88553005 -13320164 + CT-rich Low_complexity Low_complexity 2 50 0 441 257 136 0 chr13 88553027 88553167 -13320002 - L2 LINE L2 -42 3271 3113 25 0 0 0 chr13 88553850 88553875 -13319294 + AT_rich Low_complexity Low_complexity 1 25 0 225 333 0 0 chr13 88554874 88554928 -13318241 + L2 LINE L2 3201 3254 -18 275 350 79 10 chr13 88556308 88556611 -13316558 + L2 LINE L2 2634 2957 -357 255 227 0 186 chr13 88557169 88557389 -13315780 + MER104 DNA Tc2 2 180 0 294 352 56 7 chr13 88557720 88557862 -13315307 + L2 LINE L2 3123 3271 -1 32 26 0 0 chr13 88557955 88557994 -13315175 + AT_rich Low_complexity Low_complexity 1 39 0 2877 6 0 0 chr13 88558313 88558628 -13314541 + AluYb8 SINE Alu 1 315 -3 2230 120 0 0 chr13 88561173 88561481 -13311688 + AluSx SINE Alu 1 308 -4 305 246 104 109 chr13 88562170 88562239 -13310930 + L1MC5 LINE L1 3067 3135 -3011 1624 50 0 0 chr13 88562239 88562438 -13310731 + L1PA5 LINE L1 5948 6146 -8 305 246 104 109 chr13 88562438 88562762 -13310407 + L1MC5 LINE L1 3135 3458 -2688 1778 157 4 4 chr13 88562776 88563056 -13310113 + AluJo SINE Alu 3 282 -30 2033 121 0 10 chr13 88563083 88563419 -13309750 + AluSc SINE Alu 8 340 0 533 276 66 50 chr13 88563966 88564422 -13308747 + L1MC5 LINE L1 4077 4539 -1607 625 281 42 5 chr13 88564557 88564749 -13308420 + L1MC5 LINE L1 5360 5558 -2250 411 262 19 97 chr13 88564758 88564947 -13308222 + L1MC5 LINE L1 7364 7519 -442 1707 112 40 0 chr13 88564947 88565198 -13307971 + AluSp SINE Alu 40 300 -13 411 262 19 97 chr13 88565198 88565329 -13307840 + L1MC5 LINE L1 7519 7659 -302 21 57 0 0 chr13 88565340 88565375 -13307794 + AT_rich Low_complexity Low_complexity 1 35 0 197 354 10 52 chr13 88565752 88565848 -13307321 - MIR SINE MIR -152 110 19 236 274 82 14 chr13 88567199 88567272 -13305897 + L2 LINE L2 3191 3268 -4 304 186 17 0 chr13 88568439 88568498 -13304671 - L1MCa LINE L1 -4361 2065 2006 211 253 35 23 chr13 88568498 88568585 -13304584 + (TA)n Simple_repeat Simple_repeat 1 88 0 322 211 47 10 chr13 88568774 88569082 -13304087 + (TA)n Simple_repeat Simple_repeat 1 319 0 234 239 23 11 chr13 88569095 88569183 -13303986 + (TA)n Simple_repeat Simple_repeat 1 89 0 261 195 203 0 chr13 88570582 88570700 -13302469 - Charlie7 DNA MER1_type -31 2581 2440 181 250 197 13 chr13 88571444 88571520 -13301649 - MIR SINE MIR -6 256 167 360 64 0 0 chr13 88571918 88571965 -13301204 + (TG)n Simple_repeat Simple_repeat 1 47 0 1679 107 101 40 chr13 88572120 88572467 -13300702 + THE1C LTR MaLR 1 368 -7 25 31 0 0 chr13 88573226 88573258 -13299911 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr13 88574508 88574543 -13298626 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 283 233 178 11 chr13 88574545 88574635 -13298534 - L2 LINE L2 -11 3302 3198 211 328 0 0 chr13 88575381 88575439 -13297730 - L2 LINE L2 -47 3266 3209 317 277 18 27 chr13 88575755 88575867 -13297302 - L1ME4a LINE L1 -1 6120 6010 198 320 27 0 chr13 88575872 88575947 -13297222 - L2 LINE L2 -2 3311 3235 1818 162 3 35 chr13 88577407 88577722 -13295447 + AluJb SINE Alu 1 305 -7 272 103 0 0 chr13 88577753 88577798 -13295371 - MIR SINE MIR -119 143 100 323 311 101 14 chr13 88578639 88578787 -13294382 + L3 LINE CR1 1412 1572 -5 339 272 308 0 chr13 88578923 88579092 -13294077 - MIR SINE MIR -1 261 41 356 286 135 30 chr13 88579282 88579499 -13293670 - MIR SINE MIR -8 254 16 183 184 0 0 chr13 88580036 88580074 -13293095 + CT-rich Low_complexity Low_complexity 1 38 0 962 181 28 14 chr13 88580655 88580871 -13292298 - L1MB1 LINE L1 -15 6174 5956 385 218 30 127 chr13 88581175 88581238 -13291931 + MER5B DNA MER1_type 2 70 -108 948 218 182 3 chr13 88581238 88581546 -13291623 + MLT1A1 LTR MaLR 3 365 0 385 218 30 127 chr13 88581546 88581647 -13291522 + MER5B DNA MER1_type 70 150 -28 2225 86 3 23 chr13 88582719 88583021 -13290148 - AluSg SINE Alu -14 296 1 377 369 37 48 chr13 88583316 88583690 -13289479 - HAL1b LINE L1 -883 465 96 251 211 100 72 chr13 88584772 88584952 -13288217 + L1ME LINE L1 5713 5897 -224 1678 181 3 26 chr13 88585254 88585558 -13287611 - AluJb SINE Alu -15 297 1 228 67 0 0 chr13 88586582 88586612 -13286557 + (TA)n Simple_repeat Simple_repeat 2 31 0 372 277 139 92 chr13 88587104 88587913 -13285256 + L1M2 LINE L1 580 1406 -5443 34 0 0 0 chr13 88587939 88587973 -13285196 + AT_rich Low_complexity Low_complexity 1 34 0 447 219 0 0 chr13 88589642 88589738 -13283431 - FRAM SINE Alu -4 172 77 1267 104 0 0 chr13 88589972 88590135 -13283034 - AluSq SINE Alu -147 166 4 739 146 0 32 chr13 88590137 88590260 -13282909 + AluSg/x SINE Alu 175 293 -17 2137 141 34 11 chr13 88590610 88590964 -13282205 + THE1B LTR MaLR 1 362 -2 659 305 101 81 chr13 88592764 88592980 -13280189 - HAL1b LINE L1 -641 707 497 1779 143 99 9 chr13 88592980 88593322 -13279847 - THE1C LTR MaLR 0 375 3 659 305 101 81 chr13 88593322 88593758 -13279411 - HAL1b LINE L1 -851 497 42 21 0 0 0 chr13 88593971 88593992 -13279177 + AT_rich Low_complexity Low_complexity 1 21 0 359 257 50 0 chr13 88594226 88594327 -13278842 + L1ME1 LINE L1 2851 2956 -3190 418 260 69 57 chr13 88594333 88594756 -13278413 + L1ME1 LINE L1 3047 3474 -2672 21 0 0 0 chr13 88594973 88594994 -13278175 + AT_rich Low_complexity Low_complexity 1 21 0 1385 249 126 36 chr13 88595037 88596028 -13277141 + L1ME1 LINE L1 5086 6159 -7 466 255 53 13 chr13 88596043 88596310 -13276859 + L1MC4 LINE L1 7507 7899 -143 258 32 0 0 chr13 88596433 88596464 -13276705 + (CA)n Simple_repeat Simple_repeat 2 32 0 1660 51 0 0 chr13 88596528 88596743 -13276426 - L1PA7 LINE L1 -250 5904 5690 1837 60 4 0 chr13 88596743 88596989 -13276180 + L1PA7 LINE L1 5922 6176 0 22 35 0 0 chr13 88597398 88597427 -13275742 + AT_rich Low_complexity Low_complexity 1 29 0 284 315 39 31 chr13 88597960 88598087 -13275082 + L3 LINE CR1 1352 1479 -98 199 352 31 50 chr13 88598133 88598292 -13274877 - L2 LINE L2 0 3272 3117 28 0 0 0 chr13 88598977 88599005 -13274164 + AT_rich Low_complexity Low_complexity 1 28 0 202 211 0 0 chr13 88600438 88600476 -13272693 + L2 LINE L2 3270 3307 -6 206 373 82 6 chr13 88600504 88600662 -13272507 + L2 LINE L2 2588 2757 -557 684 219 61 6 chr13 88600872 88601036 -13272133 + MLT1B LTR MaLR 1 173 -217 273 115 33 16 chr13 88601054 88601115 -13272054 + CT-rich Low_complexity Low_complexity 1 62 0 496 239 21 7 chr13 88601129 88601271 -13271898 + MLT1B LTR MaLR 201 344 -46 251 172 0 17 chr13 88601271 88601329 -13271840 + A-rich Low_complexity Low_complexity 2 58 0 638 270 45 51 chr13 88601525 88601888 -13271281 + L2 LINE L2 2813 3271 -42 183 129 0 0 chr13 88603296 88603327 -13269842 + (CAT)n Simple_repeat Simple_repeat 2 32 0 243 103 0 0 chr13 88603585 88603624 -13269545 + (CAGG)n Simple_repeat Simple_repeat 2 40 0 676 240 88 0 chr13 88603677 88603869 -13269300 - MER3 DNA MER1_type 0 209 1 359 319 130 5 chr13 88604187 88604372 -13268797 + MIR SINE MIR 52 259 -3 371 234 70 53 chr13 88605564 88605735 -13267434 - MER5B DNA MER1_type -1 177 4 23 0 0 0 chr13 88605745 88605768 -13267401 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 88609163 88609186 -13263983 + AT_rich Low_complexity Low_complexity 1 23 0 293 269 86 65 chr13 88609908 88610001 -13263168 - MER5A DNA MER1_type -6 183 78 892 215 49 101 chr13 88611459 88612014 -13261155 - MLT1E1 LTR MaLR -8 585 51 5209 120 62 2 chr13 88612226 88613334 -13259835 + L1PA16 LINE L1 5008 6163 -3 209 194 48 16 chr13 88613927 88613989 -13259180 + G-rich Low_complexity Low_complexity 3 66 0 41053 50 2 1 chr13 88614092 88619807 -13253362 - L1P2 LINE L1 -434 5721 2 387 293 73 73 chr13 88620016 88620275 -13252894 + HAL1b LINE L1 97 355 -993 371 238 64 145 chr13 88620488 88620770 -13252399 + L1ME3A LINE L1 5696 5954 -216 317 298 133 21 chr13 88621231 88621419 -13251750 + L1MC4a LINE L1 3242 3450 -2696 23 33 0 0 chr13 88622000 88622030 -13251139 + AT_rich Low_complexity Low_complexity 1 30 0 1471 168 40 7 chr13 88622166 88622469 -13250700 + L1MA3 LINE L1 5993 6305 0 232 157 0 20 chr13 88622508 88622559 -13250610 + LTR66 LTR ERVL 390 439 -171 326 353 89 28 chr13 88622754 88623145 -13250024 + L1MC4a LINE L1 3521 3935 -2211 21 71 0 0 chr13 88624108 88624150 -13249019 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr13 88624323 88624351 -13248818 + AT_rich Low_complexity Low_complexity 1 28 0 352 305 55 70 chr13 88624494 88624826 -13248343 + L1MC4a LINE L1 5519 5846 -1962 1771 247 41 25 chr13 88624826 88625337 -13247832 + LTR40a LTR ERVL 1 519 0 352 305 55 70 chr13 88625337 88625401 -13247768 + L1MC4a LINE L1 5846 5909 -1899 183 350 68 10 chr13 88625855 88625958 -13247211 - L2 LINE L2 -1361 1953 1845 1874 196 55 44 chr13 88628341 88628618 -13244551 - MLT1C LTR MaLR -4 463 178 2056 107 10 10 chr13 88628618 88628908 -13244261 - AluSp SINE Alu -23 290 1 1874 196 55 44 chr13 88628908 88629088 -13244081 - MLT1C LTR MaLR -289 178 1 227 228 53 105 chr13 88630156 88630270 -13242899 - Charlie7 DNA MER1_type -2502 110 3 205 202 0 36 chr13 88630447 88630531 -13242638 + (TATG)n Simple_repeat Simple_repeat 4 84 0 577 332 9 42 chr13 88630880 88631002 -13242167 - MIR SINE MIR -34 228 114 1348 208 48 83 chr13 88631002 88631184 -13241985 + MLT1C LTR MaLR 1 188 -279 2290 73 17 0 chr13 88631184 88631472 -13241697 + AluSp SINE Alu 1 293 -20 1348 208 48 83 chr13 88631472 88631771 -13241398 + MLT1C LTR MaLR 188 465 -2 577 332 9 42 chr13 88631771 88631862 -13241307 - MIR SINE MIR -148 114 22 212 317 0 0 chr13 88632174 88632234 -13240935 + (CATA)n Simple_repeat Simple_repeat 4 63 0 2195 108 16 7 chr13 88632638 88632945 -13240224 + AluSg SINE Alu 1 310 0 1133 193 20 16 chr13 88633041 88633290 -13239879 + L1PB4 LINE L1 5893 6142 -14 240 286 16 95 chr13 88633590 88633716 -13239453 - MIR SINE MIR -68 140 25 240 122 0 0 chr13 88633716 88633757 -13239412 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 370 10 40 chr13 88634135 88634235 -13238934 - MIR3 SINE MIR -13 195 99 367 258 153 37 chr13 88634520 88634683 -13238486 + MIR SINE MIR 73 254 -8 202 354 12 37 chr13 88634716 88634798 -13238371 - MIR3 SINE MIR -114 94 15 804 256 61 14 chr13 88635240 88635600 -13237569 - MER97a DNA MER1_type? 0 894 518 364 140 0 0 chr13 88635762 88635819 -13237350 + Alu SINE Alu 244 300 0 8049 132 14 4 chr13 88635829 88637055 -13236114 - Tigger1 DNA MER2_type -1155 1263 26 708 258 57 50 chr13 88638769 88639068 -13234101 + LTR16A1 LTR ERVL 8 308 -149 396 272 142 31 chr13 88639202 88639368 -13233801 - L1MEc LINE L1 -3594 2535 2330 1694 159 184 11 chr13 88639368 88639733 -13233436 + MSTA LTR MaLR 1 428 0 396 272 142 31 chr13 88639733 88639820 -13233349 - L1MEc LINE L1 -3799 2330 2254 427 289 73 97 chr13 88639911 88640165 -13233004 - L1MEc LINE L1 -4619 1691 1451 2449 51 3 0 chr13 88640165 88640459 -13232710 - AluY SINE Alu -16 295 1 427 289 73 97 chr13 88640459 88640658 -13232511 - L1MEc LINE L1 -4859 1451 1249 314 325 84 36 chr13 88640675 88641223 -13231946 - L1MEc LINE L1 -4969 1150 577 21 0 0 0 chr13 88641592 88641613 -13231556 + AT_rich Low_complexity Low_complexity 1 21 0 309 288 51 42 chr13 88641740 88641858 -13231311 + L2 LINE L2 2887 3005 -308 1020 144 9 81 chr13 88641868 88641996 -13231173 - L1PA16 LINE L1 -7 6159 6023 189 0 0 0 chr13 88641996 88642017 -13231152 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1966 136 4 0 chr13 88642017 88642297 -13230872 - AluSx SINE Alu -31 281 1 1020 144 9 81 chr13 88642297 88642389 -13230780 - L1PA16 LINE L1 -141 6025 5954 21 0 0 0 chr13 88642393 88642414 -13230755 + AT_rich Low_complexity Low_complexity 1 21 0 1563 205 78 6 chr13 88642529 88642875 -13230294 - MSTB LTR MaLR -55 371 1 1561 175 10 23 chr13 88643289 88643592 -13229577 + AluJo SINE Alu 3 301 -11 1736 261 74 16 chr13 88643696 88644275 -13228894 - MLT1E2 LTR MaLR 0 626 14 2035 128 0 0 chr13 88644471 88644761 -13228408 - AluSx SINE Alu -22 290 1 255 351 47 20 chr13 88644811 88644959 -13228210 + MIR SINE MIR 20 171 -91 2102 118 34 0 chr13 88645781 88646077 -13227092 - AluSx SINE Alu -6 306 1 183 129 0 0 chr13 88646410 88646441 -13226728 + (TA)n Simple_repeat Simple_repeat 2 32 0 615 76 0 0 chr13 88646657 88646736 -13226433 + L1P LINE L1 4059 4137 -2009 572 283 88 15 chr13 88646930 88647202 -13225967 + L1ME LINE L1 5461 5752 -369 717 294 89 23 chr13 88647250 88647553 -13225616 - L2 LINE L2 -42 3271 2949 30 27 0 0 chr13 88647979 88648016 -13225153 + AT_rich Low_complexity Low_complexity 1 37 0 338 287 82 16 chr13 88648174 88648296 -13224873 - L2 LINE L2 -15 3298 3169 252 208 0 19 chr13 88649798 88649851 -13223318 + LTR40b LTR ERVL 411 462 0 269 278 14 14 chr13 88649854 88649926 -13223243 + L2 LINE L2 3185 3256 -16 220 255 0 0 chr13 88651114 88651161 -13222008 + MIR SINE MIR 2 48 -214 192 250 23 0 chr13 88653035 88653079 -13220090 + L2 LINE L2 3228 3272 0 1867 146 76 15 chr13 88656394 88656737 -13216432 + THE1B LTR MaLR 1 364 0 492 241 64 54 chr13 88657904 88658107 -13215062 - MIR3 SINE MIR -1 207 3 183 310 17 52 chr13 88662038 88662096 -13211073 + L2 LINE L2 3149 3204 -68 410 41 0 0 chr13 88662109 88662158 -13211011 - L1PA7 LINE L1 -552 5602 5554 3654 101 2 25 chr13 88662158 88662723 -13210446 + L1PA7 LINE L1 5601 6153 -1 1893 179 19 21 chr13 88663940 88664315 -13208854 - MLT1A2 LTR MaLR 0 374 1 221 233 0 23 chr13 88665696 88665739 -13207430 + L2 LINE L2 3211 3252 -20 239 275 126 18 chr13 88666648 88666815 -13206354 + L1ME LINE L1 5392 5576 -545 536 308 71 16 chr13 88666823 88667005 -13206164 + MER91A DNA MER1_type 3 194 -2 294 325 34 8 chr13 88667337 88667454 -13205715 - L2 LINE L2 -2 3311 3192 781 283 50 35 chr13 88667777 88668060 -13205109 - L2 LINE L2 -2 3311 3025 882 119 7 41 chr13 88668075 88668236 -13204933 + L1PA16 LINE L1 5871 6036 -119 229 279 0 15 chr13 88668371 88668439 -13204730 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 27 29 0 0 chr13 88668559 88668593 -13204576 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 88668706 88668727 -13204442 + AT_rich Low_complexity Low_complexity 1 21 0 322 338 62 37 chr13 88669039 88669444 -13203725 - L1M4 LINE L1 -1486 4660 4246 304 231 67 48 chr13 88669781 88669885 -13203284 + L2 LINE L2 3196 3301 -12 722 315 79 28 chr13 88670334 88670762 -13202407 + MLT1L LTR MaLR 156 605 -10 2086 264 111 84 chr13 88670914 88672435 -13200734 - L2 LINE L2 -308 3005 1229 1149 82 0 6 chr13 88672435 88672594 -13200575 + L1PA10 LINE L1 6009 6166 -2 2086 264 111 84 chr13 88672594 88672738 -13200431 - L2 LINE L2 -2084 1229 1090 295 379 101 7 chr13 88674697 88674995 -13198174 - LTR16A LTR ERVL -97 353 28 231 250 48 58 chr13 88675577 88675681 -13197488 + HsTC2 DNA Tc2 2 104 -1794 811 257 137 34 chr13 88675703 88676084 -13197085 + HsTC2 DNA Tc2 1274 1693 -205 203 250 263 0 chr13 88676861 88676937 -13196232 + MIR SINE MIR 35 130 -132 489 34 0 0 chr13 88677189 88677248 -13195921 + (TG)n Simple_repeat Simple_repeat 2 60 0 643 264 50 22 chr13 88678596 88678778 -13194391 + MER5A DNA MER1_type 3 189 0 540 218 54 0 chr13 88680203 88680350 -13192819 + L1MEc LINE L1 1016 1170 -5226 834 261 150 52 chr13 88681397 88681857 -13191312 + L2 LINE L2 2809 3313 0 21 71 0 0 chr13 88681857 88681899 -13191270 + AT_rich Low_complexity Low_complexity 1 42 0 313 280 34 0 chr13 88682893 88683011 -13190158 + (TA)n Simple_repeat Simple_repeat 2 123 0 286 174 65 36 chr13 88683038 88683176 -13189993 + (TTATA)n Simple_repeat Simple_repeat 4 145 0 5259 137 16 5 chr13 88683181 88683549 -13189620 - L1PB1 LINE L1 -1 6150 5788 198 0 0 0 chr13 88683549 88683571 -13189598 + (TA)n Simple_repeat Simple_repeat 1 22 0 5259 137 16 5 chr13 88683571 88684072 -13189097 - L1PB1 LINE L1 -363 5788 5271 243 234 44 141 chr13 88685030 88685257 -13187912 - HAL1 LINE L1 -2 2505 2301 1305 297 97 51 chr13 88685338 88686562 -13186607 - HAL1 LINE L1 -473 2034 754 243 0 0 0 chr13 88686611 88686638 -13186531 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chr13 88686637 88686666 -13186503 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 243 288 135 18 chr13 88686729 88686840 -13186329 - HAL1 LINE L1 -1904 603 480 373 211 53 38 chr13 88687143 88687276 -13185893 - LTR16A1 LTR ERVL -320 137 3 340 396 25 17 chr13 88687276 88687516 -13185653 - L2 LINE L2 -481 2833 2592 183 365 0 0 chr13 88687853 88687916 -13185253 - L2 LINE L2 -2 3311 3249 399 349 198 46 chr13 88687955 88688755 -13184414 + L3 LINE CR1 441 1361 -216 543 160 9 38 chr13 88689842 88689948 -13183221 - MER5A DNA MER1_type -86 103 1 658 341 76 42 chr13 88689960 88690315 -13182854 + MER115 DNA AcHobo 64 430 -263 388 227 65 4 chr13 88690612 88690738 -13182431 + MIR SINE MIR 53 184 -24 333 359 61 0 chr13 88690896 88691027 -13182142 + L2 LINE L2 3134 3272 0 221 152 0 0 chr13 88691066 88691099 -13182070 + L2 LINE L2 3222 3254 -18 685 141 0 89 chr13 88693414 88693549 -13179620 - FLAM_C SINE Alu -10 123 1 2131 111 10 0 chr13 88694440 88694728 -13178441 + AluSx SINE Alu 2 292 -20 23 0 0 0 chr13 88694728 88694751 -13178418 + AT_rich Low_complexity Low_complexity 1 23 0 1905 154 3 3 chr13 88695687 88695979 -13177190 + AluSq SINE Alu 1 292 -21 989 222 66 5 chr13 88695983 88696195 -13176974 + MIR SINE MIR 28 252 -10 243 170 57 0 chr13 88696248 88696301 -13176868 + (TGGA)n Simple_repeat Simple_repeat 4 59 0 1508 118 0 5 chr13 88696685 88696896 -13176273 + AluSg/x SINE Alu 99 308 -4 183 370 99 50 chr13 88697084 88697527 -13175642 - L2 LINE L2 -4 3268 2804 1165 155 193 30 chr13 88697618 88697914 -13175255 + MER2 DNA MER2_type 1 344 0 1826 163 10 3 chr13 88698514 88698821 -13174348 + AluJb SINE Alu 1 309 -3 23 101 0 0 chr13 88698861 88698940 -13174229 + AT_rich Low_complexity Low_complexity 1 79 0 432 328 68 54 chr13 88700221 88700706 -13172463 - L2 LINE L2 -1212 2102 1611 186 133 0 0 chr13 88701946 88701976 -13171193 + (CAA)n Simple_repeat Simple_repeat 2 31 0 568 0 0 27 chr13 88702316 88702391 -13170778 - L1PA2 LINE L1 -3 6152 6080 227 125 0 83 chr13 88702391 88702439 -13170730 + L1M2 LINE L1 5440 5483 -817 17052 162 36 47 chr13 88705068 88711999 -13161170 + L1M1 LINE L1 284 7155 -569 1170 297 71 14 chr13 88712099 88712748 -13160421 + L1MEc LINE L1 1193 1878 -4518 * 5424 83 37 29 chr13 88712739 88712903 -13160266 + L1PB2 LINE L1 5313 5474 -677 2105 100 41 0 chr13 88712903 88713194 -13159975 + AluY SINE Alu 1 303 -8 5424 83 37 29 chr13 88713194 88713859 -13159310 + L1PB2 LINE L1 5474 6149 -2 22 0 0 0 chr13 88715748 88715770 -13157399 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 88716125 88716149 -13157020 + AT_rich Low_complexity Low_complexity 1 24 0 291 175 159 0 chr13 88716245 88716308 -13156861 + MER116 DNA Mariner 5 77 -3 23 33 0 0 chr13 88716582 88716612 -13156557 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 88717566 88717594 -13155575 + AT_rich Low_complexity Low_complexity 1 28 0 406 269 58 53 chr13 88718599 88718770 -13154399 - MER5B DNA MER1_type -6 172 1 306 0 0 0 chr13 88719120 88719154 -13154015 + (CA)n Simple_repeat Simple_repeat 2 35 0 309 164 0 0 chr13 88719393 88719448 -13153721 - Alu SINE Alu -248 55 1 2696 157 2 4 chr13 88719450 88719901 -13153268 - L1MB3 LINE L1 -46 6137 5688 353 253 0 48 chr13 88719963 88720046 -13153123 + MER58A DNA MER1_type 1 79 -28 240 262 29 58 chr13 88720206 88720309 -13152860 - MIR SINE MIR -62 200 101 2218 84 13 23 chr13 88720456 88720632 -13152537 - AluSp SINE Alu -8 305 132 306 0 0 0 chr13 88720632 88720666 -13152503 + (TA)n Simple_repeat Simple_repeat 2 35 0 2218 84 13 23 chr13 88720666 88720797 -13152372 - AluSp SINE Alu -181 132 1 258 259 47 101 chr13 88720802 88720915 -13152254 - MIR SINE MIR -65 143 39 1068 189 23 14 chr13 88720915 88721132 -13152037 - MER20 DNA MER1_type 0 219 1 258 259 47 101 chr13 88721132 88721166 -13152003 - MIR SINE MIR -169 39 5 573 259 24 30 chr13 88721275 88721441 -13151728 + MIR SINE MIR 8 172 -90 287 336 62 27 chr13 88721718 88721864 -13151305 - MIR3 SINE MIR 0 208 58 262 259 0 12 chr13 88724515 88724596 -13148573 - MER116 DNA Mariner 0 80 1 215 188 14 43 chr13 88724682 88724751 -13148418 + A-rich Low_complexity Low_complexity 6 72 0 29 0 0 0 chr13 88725037 88725066 -13148103 + AT_rich Low_complexity Low_complexity 1 29 0 500 274 178 0 chr13 88726748 88726894 -13146275 + MER5A DNA MER1_type 10 181 -8 201 235 10 51 chr13 88727217 88727315 -13145854 + A-rich Low_complexity Low_complexity 4 97 0 839 284 76 16 chr13 88727943 88728324 -13144845 + MER90 LTR ERV1 71 474 -140 1382 138 29 25 chr13 88728330 88728569 -13144600 - MER1B DNA MER1_type -76 263 24 816 206 7 0 chr13 88728568 88728714 -13144455 + MER90 LTR ERV1 468 614 0 * 210 364 109 21 chr13 88728735 88728974 -13144195 + L2 LINE L2 2827 3086 -186 6284 144 11 7 chr13 88729479 88730813 -13142356 - L1PA10 LINE L1 -18 6150 4794 2405 124 16 8 chr13 88730813 88731185 -13141984 + THE1C LTR MaLR 1 375 0 6284 144 11 7 chr13 88731185 88731687 -13141482 - L1PA10 LINE L1 -1374 4794 4295 24 32 0 0 chr13 88731950 88731981 -13141188 + AT_rich Low_complexity Low_complexity 1 31 0 325 309 50 14 chr13 88732084 88732223 -13140946 + MIR SINE MIR 119 262 0 232 328 0 0 chr13 88733015 88733082 -13140087 - L2 LINE L2 -6 3266 3200 1802 146 7 23 chr13 88734229 88734531 -13138638 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr13 88734756 88734778 -13138391 + AT_rich Low_complexity Low_complexity 1 22 0 1476 200 62 75 chr13 88735336 88735742 -13137427 + MLT1C LTR MaLR 1 402 -65 2415 81 0 0 chr13 88735742 88736050 -13137119 - AluSg SINE Alu -2 308 1 1476 200 62 75 chr13 88736050 88736107 -13137062 + MLT1C LTR MaLR 402 458 -9 205 200 80 53 chr13 88736410 88736485 -13136684 + MER5A DNA MER1_type 29 105 -84 1266 67 0 0 chr13 88737661 88737810 -13135359 + AluY SINE Alu 1 149 -162 259 79 0 0 chr13 88737957 88737995 -13135174 + L1MA4A LINE L1 6244 6281 -22 * 2506 254 72 27 chr13 88737978 88739354 -13133815 + L1ME3 LINE L1 4496 5955 -207 2485 40 7 3 chr13 88739354 88739653 -13133516 + AluY SINE Alu 1 300 -11 2506 254 72 27 chr13 88739653 88739767 -13133402 + L1ME3 LINE L1 5955 6062 -100 271 0 51 0 chr13 88739771 88739810 -13133359 + (TG)n Simple_repeat Simple_repeat 2 42 0 373 247 147 40 chr13 88741377 88741527 -13131642 + MIR SINE MIR 85 250 -12 3959 69 0 4 chr13 88743244 88743751 -13129418 + L1PA7 LINE L1 5649 6153 -1 1714 282 103 50 chr13 88745511 88746288 -13126881 - L2 LINE L2 -1340 1974 1155 216 255 180 48 chr13 88746288 88746428 -13126741 + MIR3 SINE MIR 3 156 -54 244 203 14 58 chr13 88746467 88746536 -13126633 + MIR SINE MIR 144 209 -53 7107 48 3 3 chr13 88746580 88748151 -13125018 + L1PA4 LINE L1 4443 6013 -142 237 139 0 0 chr13 88750806 88750849 -13122320 + (CA)n Simple_repeat Simple_repeat 1 43 0 2313 93 3 0 chr13 88751659 88751959 -13121210 + AluSq SINE Alu 1 301 -12 246 174 0 0 chr13 88751960 88752006 -13121163 + (TA)n Simple_repeat Simple_repeat 1 46 0 2069 129 0 11 chr13 88752498 88752804 -13120365 - AluSq SINE Alu 0 303 1 210 353 103 32 chr13 88753345 88753501 -13119668 + MIR SINE MIR 87 253 -9 182 372 35 54 chr13 88754184 88754442 -13118727 + L2 LINE L2 2590 2842 -472 246 310 0 11 chr13 88755670 88755757 -13117412 - MLT1L LTR MaLR -420 195 110 28 29 0 0 chr13 88759287 88759322 -13113847 + GC_rich Low_complexity Low_complexity 1 35 0 319 244 110 106 chr13 88759415 88759661 -13113508 - L1M2 LINE L1 -5936 913 667 303 332 171 47 chr13 88759527 88760307 -13112862 + L1M2 LINE L1 529 1404 -5445 * 30 45 0 0 chr13 88762250 88762294 -13110875 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr13 88762369 88762397 -13110772 + AT_rich Low_complexity Low_complexity 1 28 0 343 295 90 60 chr13 88762451 88762817 -13110352 - L2 LINE L2 -16 3297 2921 22 35 0 0 chr13 88763740 88763769 -13109400 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 88764697 88764718 -13108451 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr13 88764771 88764791 -13108378 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 567 294 28 39 chr13 88765761 88765941 -13107228 - MER5B DNA MER1_type 0 178 1 294 98 0 0 chr13 88766210 88766261 -13106908 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2060 88 48 0 chr13 88766261 88766534 -13106635 - AluSx SINE Alu -26 286 1 507 33 0 0 chr13 88769268 88769329 -13103840 + (TG)n Simple_repeat Simple_repeat 2 62 0 698 305 75 9 chr13 88770673 88770886 -13102283 - MIR SINE MIR -34 228 2 24 0 0 0 chr13 88771126 88771150 -13102019 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 88771334 88771363 -13101806 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr13 88772457 88772503 -13100666 + (CA)n Simple_repeat Simple_repeat 2 47 0 277 269 41 28 chr13 88772716 88772861 -13100308 + L1M4 LINE L1 3786 3932 -2214 1876 267 42 62 chr13 88773017 88773956 -13099213 - L1MC4 LINE L1 -410 7632 6713 1151 281 18 12 chr13 88773961 88774288 -13098881 - MER93a LTR ERV1 0 402 74 744 285 43 37 chr13 88774395 88775485 -13097684 - L1MC4 LINE L1 -1192 6616 5600 209 357 71 63 chr13 88776975 88777213 -13095956 - MIR SINE MIR -3 259 20 413 320 75 94 chr13 88777243 88777680 -13095489 + L2 LINE L2 2429 2857 -457 262 390 9 0 chr13 88778400 88778505 -13094664 - L2 LINE L2 -9 3304 3199 21 36 0 0 chr13 88778787 88778815 -13094354 + AT_rich Low_complexity Low_complexity 1 28 0 454 369 54 1 chr13 88779495 88779731 -13093438 - MIR SINE MIR -10 252 7 245 242 0 0 chr13 88781448 88781514 -13091655 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 1525 72 5 5 chr13 88783877 88784085 -13089084 - L1PA5 LINE L1 -4 6150 5943 479 312 64 54 chr13 88784739 88785364 -13087805 - L1ME4a LINE L1 -3 6118 5488 383 282 110 33 chr13 88785469 88785742 -13087427 - L1ME4a LINE L1 -746 5400 5107 321 293 0 10 chr13 88785792 88785891 -13087278 - L1P LINE L1 -1131 5015 4918 1960 75 10 34 chr13 88786818 88787113 -13086056 + L1MA1 LINE L1 6015 6302 0 211 333 155 21 chr13 88788304 88788611 -13084558 - L2 LINE L2 -208 3064 2715 256 250 38 62 chr13 88788614 88788694 -13084475 - L2 LINE L2 -862 2452 2375 2243 82 3 3 chr13 88788869 88789160 -13084009 - AluY SINE Alu -19 292 2 310 308 96 39 chr13 88789865 88790073 -13083096 - MIR SINE MIR -6 256 37 24 32 0 0 chr13 88791251 88791282 -13081887 + AT_rich Low_complexity Low_complexity 1 31 0 219 69 0 0 chr13 88791729 88791758 -13081411 + (TG)n Simple_repeat Simple_repeat 2 30 0 2052 138 3 0 chr13 88794333 88794631 -13078538 - AluSx SINE Alu -10 302 4 240 242 61 15 chr13 88794910 88794976 -13078193 + MIR3 SINE MIR 139 207 -1 295 247 91 58 chr13 88795383 88795537 -13077632 - MIR SINE MIR -55 207 49 1200 192 24 0 chr13 88795810 88796060 -13077109 + L1MA10 LINE L1 4358 4613 -1533 4508 173 50 25 chr13 88796062 88797464 -13075705 + L1MA6 LINE L1 4844 6273 -27 3458 168 17 9 chr13 88797489 88798143 -13075026 + L1MA10 LINE L1 4613 5271 -875 1959 176 27 130 chr13 88798145 88798221 -13074948 - MSTB LTR MaLR -1 431 349 1964 141 0 7 chr13 88798221 88798511 -13074658 + AluSx SINE Alu 1 288 -24 1959 176 27 130 chr13 88798511 88798913 -13074256 - MSTB LTR MaLR -83 349 2 3827 173 45 98 chr13 88798914 88800021 -13073148 + L1MA10 LINE L1 5276 6323 -11 347 64 0 0 chr13 88800157 88800204 -13072965 - L1MC/D LINE L1 -524 5809 5763 2329 167 36 28 chr13 88800204 88800667 -13072502 + L1MC1 LINE L1 5846 6315 -18 385 234 48 48 chr13 88800679 88800824 -13072345 - L1M4 LINE L1 -3454 2692 2548 207 69 0 0 chr13 88800844 88800873 -13072296 + (A)n Simple_repeat Simple_repeat 1 29 0 2128 117 0 7 chr13 88800976 88801283 -13071886 - AluSg SINE Alu -5 305 1 194 0 39 0 chr13 88801804 88801830 -13071339 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 22185 29 1 0 chr13 88801866 88805321 -13067848 - L1PA4 LINE L1 0 6155 2698 3068 186 39 19 chr13 88805991 88806690 -13066479 - L1MB7 LINE L1 0 6184 5472 328 149 0 0 chr13 88808260 88808327 -13064842 - LTR66 LTR ERVL -150 460 394 229 315 0 0 chr13 88808345 88808434 -13064735 - L1MC4 LINE L1 -1339 6703 6615 * 257 300 0 0 chr13 88808391 88808481 -13064688 + L1MC4 LINE L1 6614 6703 -1339 549 265 0 0 chr13 88808484 88808654 -13064515 + (TA)n Simple_repeat Simple_repeat 1 170 0 243 322 0 0 chr13 88808719 88808809 -13064360 - L1MC4 LINE L1 -1339 6703 6614 241 234 104 0 chr13 88808742 88808819 -13064350 + L1MC4 LINE L1 6615 6699 -1343 * 378 243 0 0 chr13 88808823 88808926 -13064243 + (TA)n Simple_repeat Simple_repeat 2 104 0 233 322 22 0 chr13 88808929 88809019 -13064150 + L1MC4 LINE L1 6614 6705 -1337 310 243 0 53 chr13 88809036 88809225 -13063944 + (TATG)n Simple_repeat Simple_repeat 2 180 0 237 208 0 0 chr13 88809263 88809316 -13063853 + L1MC4 LINE L1 6648 6700 -1342 286 264 22 0 chr13 88809354 88809445 -13063724 - L1MC4 LINE L1 -1336 6706 6614 229 49 0 49 chr13 88809489 88809530 -13063639 + (TA)n Simple_repeat Simple_repeat 1 39 0 202 102 0 41 chr13 88809606 88809655 -13063514 + (TA)n Simple_repeat Simple_repeat 1 47 0 553 344 68 11 chr13 88810029 88810308 -13062861 + MLT1I LTR MaLR 113 407 -2 24 53 0 0 chr13 88810381 88810419 -13062750 + AT_rich Low_complexity Low_complexity 1 38 0 282 272 29 7 chr13 88810802 88810938 -13062231 - L1ME LINE L1 -241 5880 5742 23 33 0 0 chr13 88813172 88813202 -13059967 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr13 88813555 88813592 -13059577 + AT_rich Low_complexity Low_complexity 1 37 0 857 223 104 0 chr13 88813998 88814200 -13058969 + MER58A DNA MER1_type 2 224 0 220 286 51 31 chr13 88815010 88815108 -13058061 + MIR3 SINE MIR 4 103 -105 216 0 0 0 chr13 88816724 88816748 -13056421 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 362 306 202 16 chr13 88816750 88817057 -13056112 - L2 LINE L2 -7 3306 2943 390 225 85 85 chr13 88817149 88817278 -13055891 - MER5B DNA MER1_type -33 145 17 25 0 0 0 chr13 88817765 88817790 -13055379 + AT_rich Low_complexity Low_complexity 1 25 0 1254 218 106 38 chr13 88818385 88818811 -13054358 - MLT1C LTR MaLR -4 463 9 955 159 0 6 chr13 88818920 88819077 -13054092 + MLT1A1 LTR MaLR 1 156 -209 853 181 28 0 chr13 88819077 88819221 -13053948 + FRAM SINE Alu 4 151 -25 33 0 0 0 chr13 88819222 88819255 -13053914 + AT_rich Low_complexity Low_complexity 1 33 0 1246 176 14 0 chr13 88819255 88819476 -13053693 + MLT1A1 LTR MaLR 142 365 0 2091 125 7 13 chr13 88819909 88820214 -13052955 - AluSx SINE Alu -1 311 9 25 51 0 0 chr13 88821059 88821098 -13052071 + AT_rich Low_complexity Low_complexity 1 39 0 226 267 23 0 chr13 88821903 88821989 -13051180 - MLT1K LTR MaLR -19 569 482 1927 195 83 13 chr13 88822630 88823102 -13050067 + MLT1D LTR MaLR 1 505 0 514 222 105 0 chr13 88823639 88823810 -13049359 - MER69 DNA AcHobo -5 2521 2333 776 302 151 11 chr13 88823960 88824311 -13048858 - MER69 DNA AcHobo -2123 403 4 388 250 50 33 chr13 88825618 88825738 -13047431 - MIR SINE MIR 0 262 141 317 62 21 0 chr13 88826328 88826376 -13046793 + (TG)n Simple_repeat Simple_repeat 2 50 0 32 43 0 0 chr13 88826593 88826639 -13046530 + AT_rich Low_complexity Low_complexity 1 46 0 2214 102 0 3 chr13 88828990 88829285 -13043884 - AluSq SINE Alu -19 294 1 344 321 104 31 chr13 88829285 88829478 -13043691 - MIR SINE MIR 0 262 56 249 262 114 59 chr13 88829512 88829641 -13043528 + MER5A DNA MER1_type 4 146 -43 394 287 140 18 chr13 88829705 88830033 -13043136 - HsTC2 DNA Tc2 -1054 844 477 369 320 23 8 chr13 88830364 88830492 -13042677 + MIR SINE MIR 20 149 -113 5956 155 29 12 chr13 88830709 88831850 -13041319 - L1MC1 LINE L1 0 6333 5175 2321 88 0 31 chr13 88831851 88832170 -13040999 - AluSc SINE Alu 0 309 1 305 301 127 60 chr13 88832485 88832817 -13040352 - L1MEc LINE L1 -3889 2507 2154 25 0 0 0 chr13 88832866 88832891 -13040278 + AT_rich Low_complexity Low_complexity 1 25 0 2126 106 0 3 chr13 88833244 88833552 -13039617 - AluSg SINE Alu 0 307 1 394 289 16 0 chr13 88834461 88834582 -13038587 - MER103 DNA DNA -43 123 1 1453 227 104 11 chr13 88835239 88835560 -13037609 + L1MD3 LINE L1 4866 5156 -1008 189 0 0 0 chr13 88835560 88835581 -13037588 + (TC)n Simple_repeat Simple_repeat 2 22 0 1453 227 104 11 chr13 88835581 88836094 -13037075 + L1MD3 LINE L1 5156 5661 -503 435 245 0 0 chr13 88836386 88836480 -13036689 - MER5A DNA MER1_type -73 116 23 473 274 133 30 chr13 88836946 88837209 -13035960 + MLT1I LTR MaLR 102 391 -18 238 298 108 59 chr13 88838039 88838344 -13034825 - L2 LINE L2 0 3313 2994 270 0 0 0 chr13 88838372 88838402 -13034767 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 67 0 0 chr13 88839417 88839462 -13033707 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 88840351 88840372 -13032797 + AT_rich Low_complexity Low_complexity 1 21 0 2239 102 0 0 chr13 88840772 88841067 -13032102 - AluY SINE Alu -10 301 7 183 222 0 0 chr13 88841806 88841842 -13031327 + L2 LINE L2 3215 3250 -22 22 0 0 0 chr13 88841855 88841877 -13031292 + AT_rich Low_complexity Low_complexity 1 22 0 2246 133 30 22 chr13 88841882 88842243 -13030926 - THE1B LTR MaLR 0 364 1 24 53 0 0 chr13 88844016 88844054 -13029115 + AT_rich Low_complexity Low_complexity 1 38 0 1638 130 4 0 chr13 88844056 88844302 -13028867 - L1PA16 LINE L1 -10 6156 5910 240 59 0 0 chr13 88844951 88844985 -13028184 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 10038 26 0 0 chr13 88844991 88846949 -13026220 - L1PA3 LINE L1 0 6155 4198 260 320 69 31 chr13 88849971 88850290 -13022879 + L1ME LINE L1 5566 5896 -225 543 282 131 23 chr13 88851880 88852397 -13020772 + L1ME3 LINE L1 4033 6148 -14 180 282 90 0 chr13 88853057 88853135 -13020034 + L2 LINE L2 2569 2653 -661 188 397 95 39 chr13 88853259 88853438 -13019731 + L2 LINE L2 2973 3161 -111 6081 91 3 0 chr13 88854054 88855500 -13017669 - L1PA11 LINE L1 0 6174 4753 198 0 0 0 chr13 88855518 88855540 -13017629 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 233 94 0 0 chr13 88855571 88855603 -13017566 - U2 snRNA snRNA -152 36 5 911 161 6 19 chr13 88855606 88855767 -13017402 - AluJo SINE Alu -47 265 107 320 298 53 26 chr13 88855768 88855919 -13017250 + MIR SINE MIR 80 234 -28 2104 106 20 0 chr13 88856245 88856546 -13016623 + AluSp SINE Alu 1 307 -6 303 130 29 14 chr13 88856565 88856634 -13016535 + GA-rich Low_complexity Low_complexity 3 72 0 1211 318 153 29 chr13 88856933 88857125 -13016044 - L2 LINE L2 -50 3263 3096 2161 80 0 73 chr13 88857125 88857439 -13015730 - AluSc SINE Alu -18 291 1 1211 318 153 29 chr13 88857439 88858381 -13014788 - L2 LINE L2 -217 3096 1988 4664 124 37 18 chr13 88859262 88860027 -13013142 - MER4E LTR ERV1 0 779 1 956 9 0 0 chr13 88860386 88860496 -13012673 - L1PA2 LINE L1 -1 6154 6045 200 211 0 53 chr13 88861972 88862029 -13011140 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 32 43 0 0 chr13 88862292 88862338 -13010831 + AT_rich Low_complexity Low_complexity 1 46 0 847 74 0 107 chr13 88862470 88862619 -13010550 - AluSg/x SINE Alu -8 304 172 1288 102 0 0 chr13 88863019 88863185 -13009984 - AluY SINE Alu -139 172 7 862 222 6 11 chr13 88863379 88863507 -13009662 - MER20 DNA MER1_type -2 217 89 3131 165 58 51 chr13 88863507 88864229 -13008940 - LTR8A LTR ERV1 0 727 1 862 222 6 11 chr13 88864229 88864280 -13008889 - MER20 DNA MER1_type -130 89 39 346 355 114 18 chr13 88864625 88864845 -13008324 - L1MEd LINE L1 -5361 758 518 225 370 56 28 chr13 88866770 88866878 -13006291 - MIR3 SINE MIR -19 189 79 28 71 0 0 chr13 88867882 88867938 -13005231 + AT_rich Low_complexity Low_complexity 1 56 0 1876 240 73 52 chr13 88867938 88868175 -13004994 - L1M4 LINE L1 -1161 4985 4755 1993 152 0 0 chr13 88868175 88868464 -13004705 - AluSx SINE Alu -23 289 1 1876 240 73 52 chr13 88868464 88869137 -13004032 - L1M4 LINE L1 -1391 4755 4055 1904 180 29 42 chr13 88869137 88869588 -13003581 + MER65A LTR ERV1 1 445 0 921 236 23 72 chr13 88869601 88870201 -13002968 + MER65A-int LTR ERV1 16 640 -4231 517 203 48 96 chr13 88870426 88870613 -13002556 + MER65A-int LTR ERV1 651 828 -4043 1147 243 26 91 chr13 88870679 88871252 -13001917 + LTR57-int LTR ERVL 428 963 -4380 * 3612 183 49 77 chr13 88870924 88871536 -13001633 + MER65A-int LTR ERV1 1522 1892 -2979 2024 132 3 0 chr13 88871536 88871824 -13001345 + AluSq SINE Alu 1 289 -24 3612 183 49 77 chr13 88871824 88872411 -13000758 + MER65A-int LTR ERV1 1892 2494 -2377 677 216 120 76 chr13 88872594 88873096 -13000073 + MER65A-int LTR ERV1 2157 2573 -2550 273 156 0 0 chr13 88873241 88873286 -12999883 + LTR9-int LTR ERV1 2428 2472 -4286 6092 221 69 80 chr13 88873392 88874857 -12998312 + LTR9-int LTR ERV1 2482 3962 -909 2736 26 0 0 chr13 88874857 88875168 -12998001 - AluY SINE Alu 0 311 1 6092 221 69 80 chr13 88875168 88875719 -12997450 + LTR9-int LTR ERV1 3962 3730 -1141 2727 164 74 49 chr13 88875719 88876316 -12996853 + LTR9 LTR ERV1 1 612 0 6092 221 69 80 chr13 88876316 88877447 -12995722 + LTR9-int LTR ERV1 3729 4871 0 1484 206 50 48 chr13 88877447 88877889 -12995280 + MER65A LTR ERV1 1 443 -2 242 264 280 3 chr13 88877892 88878206 -12994963 - L1M4 LINE L1 -2089 4057 3657 609 241 103 73 chr13 88878286 88878770 -12994399 - L1M4c LINE L1 -4444 1938 1314 1675 207 43 5 chr13 88878770 88879146 -12994023 - MLT1B LTR MaLR 0 390 1 609 241 103 73 chr13 88879146 88879440 -12993729 - L1M4c LINE L1 -5068 1314 1030 216 182 0 0 chr13 88879622 88879666 -12993503 + T-rich Low_complexity Low_complexity 1 44 0 195 125 0 0 chr13 88879754 88879794 -12993375 + (TA)n Simple_repeat Simple_repeat 2 41 0 1702 145 63 7 chr13 88880289 88880558 -12992611 + AluSg SINE Alu 1 284 -26 298 376 8 23 chr13 88881052 88881185 -12991984 - L3 LINE CR1 -124 1453 1323 22 70 0 0 chr13 88881447 88881490 -12991679 + AT_rich Low_complexity Low_complexity 1 43 0 250 59 98 0 chr13 88881493 88881544 -12991625 - L1MC4 LINE L1 0 8042 7987 2230 101 3 3 chr13 88881933 88882230 -12990939 - AluSx SINE Alu -15 297 1 2033 97 37 10 chr13 88882338 88882636 -12990533 - AluSg SINE Alu -4 306 1 200 319 115 9 chr13 88883003 88883116 -12990053 + MIR SINE MIR 59 183 -79 503 353 48 0 chr13 88884072 88884279 -12988890 - MIR SINE MIR 0 262 46 231 188 0 0 chr13 88884693 88884741 -12988428 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 161 0 0 chr13 88885214 88885276 -12987893 + (TG)n Simple_repeat Simple_repeat 2 63 0 212 328 0 0 chr13 88885293 88885357 -12987812 + GA-rich Low_complexity Low_complexity 3 66 0 235 276 53 35 chr13 88886150 88886378 -12986791 - L1M4 LINE L1 -905 5241 5010 255 237 135 58 chr13 88886497 88886653 -12986516 - L1ME3A LINE L1 -33 6137 5970 1602 275 36 9 chr13 88886751 88887461 -12985708 - L1ME3A LINE L1 -254 5916 5188 663 245 91 43 chr13 88887525 88887897 -12985272 - L1M4 LINE L1 -1221 4925 4536 299 301 45 19 chr13 88888083 88888239 -12984930 - L1M4 LINE L1 -1949 4197 4038 299 276 0 0 chr13 88888360 88888436 -12984733 + MER116 DNA Mariner 4 79 -1 629 301 183 12 chr13 88889105 88889537 -12983632 - L2 LINE L2 -1045 2269 1764 218 184 0 0 chr13 88889682 88889720 -12983449 + CT-rich Low_complexity Low_complexity 3 40 0 24 0 0 0 chr13 88891476 88891500 -12981669 + AT_rich Low_complexity Low_complexity 1 24 0 236 237 53 13 chr13 88891765 88891841 -12981328 - L2 LINE L2 -202 3070 2992 281 268 21 41 chr13 88891968 88892065 -12981104 - L2 LINE L2 -524 2790 2696 183 371 65 0 chr13 88892099 88892223 -12980946 - L2 LINE L2 -926 2388 2257 1849 136 6 51 chr13 88892348 88892664 -12980505 + AluSx SINE Alu 2 303 -9 1177 101 47 18 chr13 88892886 88893055 -12980114 + AluSg/x SINE Alu 126 299 -13 1479 122 4 8 chr13 88893156 88893393 -12979776 - L1MA1 LINE L1 -9 6293 6058 388 342 0 0 chr13 88894087 88894201 -12978968 + MIR SINE MIR 31 144 -64 195 170 128 0 chr13 88894789 88894836 -12978333 + MIR3 SINE MIR 150 202 -6 468 363 55 4 chr13 88895124 88895361 -12977808 + MIR SINE MIR 1 249 -13 27 0 0 0 chr13 88895426 88895453 -12977716 + AT_rich Low_complexity Low_complexity 1 27 0 321 146 0 0 chr13 88896880 88896935 -12976234 - L1PA13 LINE L1 -5 6158 6104 407 63 0 0 chr13 88896935 88896998 -12976171 + L1PA13 LINE L1 5985 6047 -116 572 70 30 10 chr13 88897029 88897129 -12976040 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 824 102 79 0 chr13 88897244 88897371 -12975798 + MER85 DNA T2_type 1 137 -2 258 337 118 6 chr13 88897385 88897554 -12975615 - MIR SINE MIR -43 219 32 1672 174 18 11 chr13 88897837 88898152 -12975017 - AluJo SINE Alu 0 317 1 352 250 179 9 chr13 88898361 88898473 -12974696 - L2 LINE L2 -1 3312 3182 234 344 99 36 chr13 88898701 88899093 -12974076 - L2 LINE L2 -338 2976 2560 227 246 31 0 chr13 88899760 88899825 -12973344 - L2 LINE L2 -828 2486 2420 22 0 0 0 chr13 88900557 88900579 -12972590 + AT_rich Low_complexity Low_complexity 1 22 0 226 292 8 25 chr13 88900659 88900779 -12972390 - L1ME4a LINE L1 -40 6081 5964 216 352 28 19 chr13 88900994 88901102 -12972067 + MIR SINE MIR 28 136 -126 192 269 39 0 chr13 88901102 88901154 -12972015 + MIR SINE MIR 100 153 -109 2302 112 20 17 chr13 88902796 88903143 -12970026 + THE1C LTR MaLR 1 348 -27 862 325 155 42 chr13 88903276 88904505 -12968664 + L2 LINE L2 1932 3311 -2 2216 106 7 0 chr13 88904684 88904977 -12968192 + AluSc SINE Alu 2 296 -13 22 0 0 0 chr13 88904977 88904999 -12968170 + AT_rich Low_complexity Low_complexity 1 22 0 1928 167 27 0 chr13 88905088 88905454 -12967715 + L1MB3 LINE L1 5806 6181 -2 1051 291 27 6 chr13 88905474 88905990 -12967179 - L1M4 LINE L1 -2679 3467 2941 210 357 136 19 chr13 88906450 88906604 -12966565 - L2 LINE L2 -25 3247 3076 203 340 117 66 chr13 88907055 88907221 -12965948 - L2 LINE L2 -780 2534 2378 1782 159 150 60 chr13 88907221 88907687 -12965482 + LTR22 LTR ERVK 1 508 -1 203 340 117 66 chr13 88907687 88908094 -12965075 - L2 LINE L2 -936 2378 1932 203 184 0 0 chr13 88908340 88908378 -12964791 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 201 139 0 0 chr13 88908716 88908759 -12964410 + (A)n Simple_repeat Simple_repeat 1 43 0 29 28 0 0 chr13 88909042 88909078 -12964091 + AT_rich Low_complexity Low_complexity 1 36 0 261 346 0 39 chr13 88909256 88909360 -12963809 + L2 LINE L2 3169 3268 -4 26 30 0 0 chr13 88910830 88910863 -12962306 + AT_rich Low_complexity Low_complexity 1 33 0 1723 159 3 44 chr13 88910988 88911303 -12961866 + AluSx SINE Alu 1 302 -10 471 63 0 0 chr13 88911445 88911508 -12961661 + (CA)n Simple_repeat Simple_repeat 2 64 0 214 269 21 50 chr13 88912438 88912514 -12960655 + GA-rich Low_complexity Low_complexity 4 76 -64 2928 9 0 0 chr13 88912514 88912832 -12960337 + AluYb8 SINE Alu 1 318 0 214 269 21 50 chr13 88912832 88912896 -12960273 + GA-rich Low_complexity Low_complexity 76 140 0 30 45 0 0 chr13 88917097 88917141 -12956028 + AT_rich Low_complexity Low_complexity 1 44 0 1009 199 19 28 chr13 88919308 88919524 -12953645 + MER20 DNA MER1_type 2 215 -4 23 33 0 0 chr13 88920639 88920669 -12952500 + AT_rich Low_complexity Low_complexity 1 30 0 393 237 111 95 chr13 88921037 88921227 -12951942 - MER58C DNA MER1_type -20 195 3 234 105 0 0 chr13 88921645 88921683 -12951486 + (TG)n Simple_repeat Simple_repeat 1 38 0 411 56 0 0 chr13 88923961 88924015 -12949154 + (TG)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr13 88926699 88926719 -12946450 + (CA)n Simple_repeat Simple_repeat 2 21 0 3158 35 28 2 chr13 88927638 88928028 -12945141 + L1PA5 LINE L1 5747 6149 -5 315 0 0 0 chr13 88928028 88928063 -12945106 + (TA)n Simple_repeat Simple_repeat 1 35 0 221 211 18 18 chr13 88928298 88928355 -12944814 + (CATATA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr13 88928617 88928638 -12944531 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 88929014 88929036 -12944133 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr13 88929722 88929758 -12943411 + AT_rich Low_complexity Low_complexity 1 36 0 296 267 0 13 chr13 88929887 88929962 -12943207 - L1ME3 LINE L1 -71 6091 6018 21 0 0 0 chr13 88931111 88931132 -12942037 + AT_rich Low_complexity Low_complexity 1 21 0 796 241 72 7 chr13 88932887 88933119 -12940050 + MIR SINE MIR 15 257 -5 293 315 48 20 chr13 88934388 88934534 -12938635 - Charlie8 DNA MER1_type -2265 152 3 185 159 114 0 chr13 88935141 88935185 -12937984 - L3b LINE CR1 -3 1580 1532 820 240 32 14 chr13 88935185 88935402 -12937767 + MER58A DNA MER1_type 1 221 -3 2171 91 14 0 chr13 88936747 88937043 -12936126 + AluSc SINE Alu 1 300 -9 44 103 0 0 chr13 88937369 88937525 -12935644 + AT_rich Low_complexity Low_complexity 1 156 0 231 88 0 0 chr13 88937557 88937591 -12935578 + (TG)n Simple_repeat Simple_repeat 1 34 0 569 201 181 14 chr13 88937600 88937744 -12935425 + MER5A DNA MER1_type 10 177 -12 633 198 62 19 chr13 88938197 88938359 -12934810 - MIR SINE MIR -4 258 90 274 275 89 52 chr13 88938602 88938824 -12934345 + MLT1H LTR MaLR 258 549 0 248 258 0 0 chr13 88939722 88939784 -12933385 + (TA)n Simple_repeat Simple_repeat 2 63 0 812 261 106 3 chr13 88939860 88940143 -12933026 + MER5C DNA MER1_type 13 324 0 263 297 69 10 chr13 88940312 88940413 -12932756 - MIR SINE MIR -152 110 4 201 222 0 0 chr13 88942387 88942423 -12930746 + (CA)n Simple_repeat Simple_repeat 2 37 0 344 235 9 0 chr13 88942454 88942569 -12930600 + (TA)n Simple_repeat Simple_repeat 1 116 0 336 48 0 0 chr13 88942630 88942672 -12930497 + (TA)n Simple_repeat Simple_repeat 1 42 0 474 344 77 56 chr13 88942795 88943282 -12929887 - L2 LINE L2 0 3272 2762 3410 62 21 73 chr13 88943282 88943799 -12929370 + LTR2B LTR ERV1 1 490 0 474 344 77 56 chr13 88943799 88944140 -12929029 - L2 LINE L2 -510 2762 2429 1949 121 0 0 chr13 88944615 88944880 -12928289 + AluSx SINE Alu 22 286 -26 1132 65 52 0 chr13 88945578 88945732 -12927437 - L1PA8 LINE L1 -166 6006 5845 1114 51 0 0 chr13 88945733 88945871 -12927298 + L1PA8 LINE L1 6020 6157 -15 3540 120 28 30 chr13 88946205 88946806 -12926363 + MER4A LTR ERV1 1 600 0 27 0 0 0 chr13 88946957 88946984 -12926185 + AT_rich Low_complexity Low_complexity 1 27 0 365 304 52 46 chr13 88947923 88948117 -12925052 + L2 LINE L2 3119 3313 0 455 316 0 26 chr13 88948352 88948507 -12924662 - L2 LINE L2 -5 3308 3158 2686 165 18 12 chr13 88948739 88949236 -12923933 - L1MC1 LINE L1 -13 6320 5821 340 318 27 9 chr13 88950806 88950916 -12922253 - L2 LINE L2 -4 3309 3198 553 168 20 0 chr13 88951117 88951218 -12921951 + L1MB2 LINE L1 5369 5471 -700 * 4482 142 45 40 chr13 88951216 88952179 -12920990 + L1PB4 LINE L1 5189 6156 0 3287 179 20 22 chr13 88952173 88952820 -12920349 + L1MB2 LINE L1 5477 6122 -49 * 1073 137 19 42 chr13 88952819 88953031 -12920138 + L1MD1 LINE L1 5761 5967 -275 * 228 87 174 0 chr13 88953029 88953075 -12920094 + L1MB2 LINE L1 6115 6168 -3 * 1748 163 48 31 chr13 88953388 88953745 -12919424 + MLT1A1 LTR MaLR 1 363 -2 2560 146 39 32 chr13 88954193 88954687 -12918482 + L1MC2 LINE L1 5601 6097 -247 1053 157 43 43 chr13 88954832 88955087 -12918082 + L1MC2 LINE L1 6081 6335 -9 623 256 51 9 chr13 88955304 88955519 -12917650 + MER58A DNA MER1_type 1 224 0 210 45 68 0 chr13 88955617 88955661 -12917508 + A-rich Low_complexity Low_complexity 2 48 0 489 301 138 44 chr13 88956365 88956684 -12916485 - MLT1L LTR MaLR -108 507 159 441 50 0 0 chr13 88956976 88957036 -12916133 + (CA)n Simple_repeat Simple_repeat 2 61 0 2243 91 7 0 chr13 88957228 88957525 -12915644 + AluSp SINE Alu 1 299 -14 2027 142 0 0 chr13 88958152 88958447 -12914722 + AluSx SINE Alu 1 295 -17 619 220 53 27 chr13 88959063 88959213 -12913956 + FRAM SINE Alu 1 154 -12 2172 90 0 0 chr13 88960158 88960436 -12912733 + AluSg SINE Alu 1 278 -32 242 29 29 0 chr13 88960445 88960480 -12912689 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 642 164 243 0 chr13 88961979 88962131 -12911038 - MER5A DNA MER1_type 0 189 1 304 223 107 45 chr13 88962501 88962613 -12910556 - MER5A DNA MER1_type -63 126 8 354 275 9 18 chr13 88963344 88963453 -12909716 + MIR3 SINE MIR 78 185 -23 181 269 126 25 chr13 88964437 88964556 -12908613 + L2 LINE L2 3081 3211 -102 1172 103 41 0 chr13 88965280 88965474 -12907695 + L1MA5A LINE L1 6092 6293 -4 2125 112 0 3 chr13 88967282 88967592 -12905577 + AluSq SINE Alu 1 309 0 468 229 20 59 chr13 88967803 88967956 -12905213 - MER97c DNA MER1_type? -925 165 19 440 229 79 43 chr13 88968306 88968446 -12904723 - MER20 DNA MER1_type -4 215 71 25 0 0 0 chr13 88969399 88969424 -12903745 + AT_rich Low_complexity Low_complexity 1 25 0 2150 92 7 3 chr13 88969424 88969734 -12903435 - AluSq SINE Alu 0 311 1 1232 191 88 43 chr13 88970307 88970636 -12902533 + MLT1C LTR MaLR 6 349 -118 576 229 17 11 chr13 88970947 88971122 -12902047 - MER5B DNA MER1_type -2 176 1 22 35 0 0 chr13 88971827 88971856 -12901313 + AT_rich Low_complexity Low_complexity 1 29 0 6012 197 20 13 chr13 88971934 88973845 -12899324 + L1MC1 LINE L1 4404 6328 -5 21 57 0 0 chr13 88974146 88974181 -12898988 + AT_rich Low_complexity Low_complexity 1 35 0 282 132 0 0 chr13 88974673 88974726 -12898443 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 403 321 0 22 chr13 88976916 88977050 -12896119 - MIR3 SINE MIR -1 207 77 396 330 98 15 chr13 88977124 88977327 -12895842 + L3 LINE CR1 646 865 -712 285 368 16 0 chr13 88977562 88977687 -12895482 + L2 LINE L2 3183 3309 -4 263 204 0 19 chr13 88977693 88977747 -12895422 + MIR SINE MIR 94 146 -116 393 223 109 98 chr13 88977857 88978113 -12895056 + L3 LINE CR1 1207 1465 -112 541 92 0 4 chr13 88978476 88978693 -12894476 + AluSq SINE Alu 1 301 -12 1452 181 17 28 chr13 88980442 88980730 -12892439 - MLT1A1 LTR MaLR 0 365 81 468 200 10 10 chr13 88980800 88980900 -12892269 + MLT1A1 LTR MaLR 1 100 -265 1851 120 0 8 chr13 88981430 88981689 -12891480 + AluSq SINE Alu 46 302 -11 870 137 25 31 chr13 88982590 88982751 -12890418 - U1 snRNA snRNA -2 163 4 406 329 36 7 chr13 88983686 88983826 -12889343 + MIR SINE MIR 5 148 -114 22 0 0 0 chr13 88983871 88983893 -12889276 + AT_rich Low_complexity Low_complexity 1 22 0 272 300 57 103 chr13 88984630 88985123 -12888046 + L2 LINE L2 2820 3289 -24 230 280 90 95 chr13 88985248 88985437 -12887732 - MIR SINE MIR -55 207 20 5937 85 4 32 chr13 88986084 88986895 -12886274 - L1PA13 LINE L1 0 6163 5376 2316 99 0 0 chr13 88986895 88987188 -12885981 + AluSc SINE Alu 1 293 -16 5937 85 4 32 chr13 88987188 88987805 -12885364 - L1PA13 LINE L1 -787 5376 4743 254 412 0 0 chr13 88988442 88988544 -12884625 - L2 LINE L2 -10 3262 3161 27 49 0 0 chr13 88988891 88988932 -12884237 + AT_rich Low_complexity Low_complexity 1 41 0 24 96 0 0 chr13 88989106 88989179 -12883990 + AT_rich Low_complexity Low_complexity 1 73 0 203 88 29 0 chr13 88989294 88989328 -12883841 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 1592 147 43 108 chr13 88990062 88990477 -12882692 - MLT1B LTR MaLR 0 390 3 1982 125 3 3 chr13 88991586 88991874 -12881295 - AluSq SINE Alu -22 291 4 342 0 0 0 chr13 88992578 88992616 -12880553 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 540 42 0 0 chr13 88992615 88992686 -12880483 + (GA)n Simple_repeat Simple_repeat 2 72 0 25 75 0 0 chr13 88993467 88993520 -12879649 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr13 88993596 88993626 -12879543 + AT_rich Low_complexity Low_complexity 1 30 0 483 53 13 0 chr13 88994118 88994193 -12878976 - L1PA16 LINE L1 0 6166 6091 237 149 43 0 chr13 88994193 88994240 -12878929 + L1PA16 LINE L1 5998 6046 -120 270 370 23 17 chr13 88994349 88994522 -12878647 - MER5A DNA MER1_type -9 180 7 311 271 78 36 chr13 88994819 88994985 -12878184 + MIR SINE MIR 61 233 -29 601 168 40 8 chr13 88996421 88996546 -12876623 + Charlie8 DNA MER1_type 89 217 -2200 3613 169 13 92 chr13 88996578 88997444 -12875725 - L1MA7 LINE L1 -1 6290 5494 200 274 16 0 chr13 88997853 88997915 -12875254 + CT-rich Low_complexity Low_complexity 1 63 0 751 276 10 21 chr13 88998785 88998977 -12874192 - MER58A DNA MER1_type -28 196 7 2000 197 8 3 chr13 89000173 89000553 -12872616 + MLT1B LTR MaLR 2 383 -7 423 0 0 0 chr13 89001441 89001488 -12871681 + (TG)n Simple_repeat Simple_repeat 2 48 0 298 233 22 56 chr13 89004516 89004606 -12868563 - MER58A DNA MER1_type 0 113 27 756 234 55 15 chr13 89005065 89005266 -12867903 - MER58A DNA MER1_type -15 209 1 260 288 0 0 chr13 89006087 89006153 -12867016 + GA-rich Low_complexity Low_complexity 1 66 0 1569 189 33 36 chr13 89006834 89007135 -12866034 - AluJb SINE Alu -12 300 1 721 328 182 18 chr13 89007360 89007927 -12865242 - L2 LINE L2 -788 2526 1867 405 305 118 38 chr13 89008034 89008296 -12864873 + MER20B DNA MER1_type 1 283 -500 305 125 18 0 chr13 89008364 89008420 -12864749 + (CATA)n Simple_repeat Simple_repeat 2 58 0 1426 276 24 8 chr13 89008434 89008902 -12864267 + MER20B DNA MER1_type 308 782 -1 207 189 0 0 chr13 89009656 89009709 -12863460 + (TA)n Simple_repeat Simple_repeat 1 53 0 255 256 30 23 chr13 89009731 89009845 -12863324 + (TA)n Simple_repeat Simple_repeat 2 119 -16 2115 139 3 0 chr13 89009845 89010154 -12863015 + AluSg SINE Alu 1 310 0 255 256 30 23 chr13 89010154 89010172 -12862997 + (TA)n Simple_repeat Simple_repeat 119 135 0 261 238 0 0 chr13 89013337 89013400 -12859769 + Charlie1 DNA MER1_type 2157 2219 -542 334 229 56 112 chr13 89013521 89013675 -12859494 - MIR SINE MIR -65 197 38 22 35 0 0 chr13 89013968 89013997 -12859172 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr13 89014061 89014090 -12859079 + AT_rich Low_complexity Low_complexity 1 29 0 4632 167 18 20 chr13 89014646 89015543 -12857626 - L1MC1 LINE L1 -14 6319 5425 1003 234 133 42 chr13 89016020 89016317 -12856852 + Charlie4a DNA MER1_type 24 292 -1669 387 0 0 0 chr13 89016317 89016360 -12856809 + (TA)n Simple_repeat Simple_repeat 1 43 0 2263 99 10 13 chr13 89016360 89016672 -12856497 - AluSq SINE Alu -2 311 1 1003 234 133 42 chr13 89016672 89016800 -12856369 + Charlie4a DNA MER1_type 291 489 -19 1133 216 36 86 chr13 89016945 89017329 -12855840 + MLT1A1 LTR MaLR 1 365 0 627 227 156 0 chr13 89017828 89017982 -12855187 + MER5A DNA MER1_type 12 189 0 1624 248 74 7 chr13 89018148 89018579 -12854590 - L1ME1 LINE L1 -31 6135 5676 2213 217 59 9 chr13 89019577 89020154 -12853015 - L1MA4 LINE L1 -124 6176 5571 257 156 39 34 chr13 89020232 89020312 -12852857 + (TA)n Simple_repeat Simple_repeat 1 79 -101 2355 75 3 0 chr13 89020312 89020606 -12852563 - AluSp SINE Alu -18 295 1 257 156 39 34 chr13 89020606 89020704 -12852465 + (TA)n Simple_repeat Simple_repeat 79 180 0 354 312 52 19 chr13 89020803 89021111 -12852058 - L1MEc LINE L1 -4582 1814 1497 3278 217 58 21 chr13 89021456 89022213 -12850956 + MER21B LTR ERV1 19 803 -60 25 31 0 0 chr13 89022547 89022579 -12850590 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr13 89024798 89024824 -12848345 + (A)n Simple_repeat Simple_repeat 1 26 0 230 181 14 42 chr13 89024939 89025011 -12848158 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 254 294 47 0 chr13 89026638 89026723 -12846446 - MIR SINE MIR -74 188 100 263 335 31 43 chr13 89026789 89026951 -12846218 + MIR SINE MIR 26 191 -65 381 344 0 0 chr13 89027328 89027450 -12845719 + MIR SINE MIR 16 137 -125 1632 224 64 22 chr13 89027501 89027952 -12845217 - MLT1D LTR MaLR -32 473 4 257 279 89 0 chr13 89027953 89028032 -12845137 + MIR SINE MIR 156 241 -21 615 178 0 0 chr13 89028176 89028277 -12844892 - AluJ/FLAM SINE Alu -211 101 1 1105 255 83 46 chr13 89028832 89029314 -12843855 + MLT1D LTR MaLR 5 504 -1 272 228 89 0 chr13 89030503 89030582 -12842587 + L1MC4 LINE L1 6615 6700 -1342 234 136 0 0 chr13 89032133 89032177 -12840992 + (GA)n Simple_repeat Simple_repeat 1 44 0 418 333 157 26 chr13 89033498 89034038 -12839131 - L1M4 LINE L1 -1807 4339 3729 288 91 0 0 chr13 89034063 89034107 -12839062 + (TG)n Simple_repeat Simple_repeat 1 44 0 326 286 200 27 chr13 89034219 89034404 -12838765 + MIR SINE MIR 45 261 -1 3266 83 9 20 chr13 89034651 89035109 -12838060 + MLT2A2 LTR ERVL 1 453 0 21 0 0 0 chr13 89035142 89035163 -12838006 + AT_rich Low_complexity Low_complexity 1 21 0 247 256 192 48 chr13 89035843 89035968 -12837201 + MER5B DNA MER1_type 27 169 -9 749 86 0 0 chr13 89036430 89036535 -12836634 - L1MA2 LINE L1 -3 6301 6197 28 0 0 0 chr13 89037361 89037389 -12835780 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 89038901 89038922 -12834247 + AT_rich Low_complexity Low_complexity 1 21 0 664 231 0 0 chr13 89039743 89039877 -12833292 + MER94 DNA DNA 1 134 0 192 400 9 9 chr13 89043871 89043986 -12829183 + MIR3 SINE MIR 88 202 -6 279 260 188 39 chr13 89044001 89044155 -12829014 + L3b LINE CR1 1314 1490 -93 396 234 18 9 chr13 89045370 89045481 -12827688 + L1MC4 LINE L1 7931 8042 0 312 269 83 21 chr13 89046429 89046574 -12826595 + MIR3 SINE MIR 33 186 -22 1920 121 0 62 chr13 89046781 89047086 -12826083 + AluSx SINE Alu 1 286 -26 463 146 20 13 chr13 89047090 89047241 -12825928 + (TA)n Simple_repeat Simple_repeat 2 153 0 186 87 65 0 chr13 89047269 89047315 -12825854 + (TA)n Simple_repeat Simple_repeat 2 50 0 359 216 52 52 chr13 89047561 89047658 -12825511 + MLT1C LTR MaLR 3 99 -291 180 261 22 0 chr13 89047658 89047704 -12825465 + MIR SINE MIR 189 235 -27 505 413 56 83 chr13 89047711 89048086 -12825083 + MLT1C LTR MaLR 103 467 0 311 250 12 0 chr13 89048288 89048368 -12824801 - MIR SINE MIR -7 255 175 1558 186 13 31 chr13 89050028 89050346 -12822823 - AluJo SINE Alu 0 312 1 358 318 8 16 chr13 89052584 89052713 -12820456 - MER5A DNA MER1_type -3 186 59 189 269 30 45 chr13 89052790 89052857 -12820312 - L2 LINE L2 -695 2619 2554 219 255 59 69 chr13 89053982 89054084 -12819085 + MIR3 SINE MIR 104 204 -4 214 259 0 0 chr13 89054820 89054874 -12818295 + A-rich Low_complexity Low_complexity 3 56 0 258 273 15 0 chr13 89054902 89054971 -12818198 + GA-rich Low_complexity Low_complexity 1 70 0 929 206 0 0 chr13 89056448 89056608 -12816561 + FRAM SINE Alu 1 160 -6 21 0 0 0 chr13 89056735 89056756 -12816413 + AT_rich Low_complexity Low_complexity 1 21 0 232 299 15 0 chr13 89057824 89057891 -12815278 + L3 LINE CR1 1509 1576 -1 1121 45 0 8 chr13 89059050 89059183 -12813986 + AluY SINE Alu 1 132 -179 196 195 0 0 chr13 89059892 89059933 -12813236 - MIR SINE MIR -121 141 101 1244 194 123 51 chr13 89060233 89060874 -12812295 + LTR48 LTR ERV1 8 783 -4 364 309 110 21 chr13 89061078 89061143 -12812026 - MIR SINE MIR -12 250 192 1769 182 3 3 chr13 89061143 89061440 -12811729 - AluSx SINE Alu -15 297 1 364 309 110 21 chr13 89061440 89061565 -12811604 - MIR SINE MIR -70 192 43 780 116 0 43 chr13 89062438 89062576 -12810593 - FLAM_C SINE Alu 0 133 2 3624 47 0 5 chr13 89063195 89063640 -12809529 - MLT2A1 LTR ERVL -1 443 1 572 231 45 0 chr13 89064010 89064144 -12809025 - MIR SINE MIR -76 186 47 24 0 0 0 chr13 89064283 89064307 -12808862 + AT_rich Low_complexity Low_complexity 1 24 0 251 310 80 0 chr13 89064349 89064449 -12808720 - MER91C DNA MER1_type -32 108 1 205 353 98 0 chr13 89065474 89065576 -12807593 - MIR SINE MIR -62 146 35 806 214 105 43 chr13 89065967 89066224 -12806945 - MER119 DNA MER1_type 0 583 311 346 70 35 18 chr13 89066242 89066299 -12806870 - L1PA16 LINE L1 -11 6155 6098 436 191 11 0 chr13 89066300 89066389 -12806780 - L1PA16 LINE L1 -105 6061 5972 1275 254 3 56 chr13 89066389 89066728 -12806441 - MER119 DNA MER1_type -262 321 1 537 249 51 41 chr13 89066815 89067012 -12806157 - L1ME3A LINE L1 -10 6160 5962 584 298 42 50 chr13 89068852 89069090 -12804079 + MIR SINE MIR 15 250 -12 440 259 9 9 chr13 89069164 89069280 -12803889 - MIR SINE MIR -54 208 93 1817 162 48 36 chr13 89070581 89070723 -12802446 + MLT1A1 LTR MaLR 4 143 -222 1982 137 27 0 chr13 89070723 89070846 -12802323 + AluSx SINE Alu 1 119 -193 441 0 0 0 chr13 89070846 89070895 -12802274 + (CA)n Simple_repeat Simple_repeat 2 50 0 1982 137 27 0 chr13 89070895 89071063 -12802106 + AluSx SINE Alu 119 300 -12 1817 162 48 36 chr13 89071063 89071278 -12801891 + MLT1A1 LTR MaLR 143 365 0 183 42 0 0 chr13 89071415 89071439 -12801730 + (CAA)n Simple_repeat Simple_repeat 2 25 0 471 313 126 5 chr13 89073736 89073934 -12799235 + MIR SINE MIR 30 251 -11 5242 117 19 9 chr13 89075003 89075810 -12797359 - L1PA16 LINE L1 -10 6156 5342 535 274 104 29 chr13 89076195 89076436 -12796733 + MLT1L LTR MaLR 352 610 -5 180 0 0 0 chr13 89076463 89076483 -12796686 + (T)n Simple_repeat Simple_repeat 1 20 0 2196 109 0 14 chr13 89077521 89077815 -12795354 - AluSq SINE Alu -23 290 1 364 198 63 71 chr13 89077817 89077943 -12795226 + Charlie4 DNA MER1_type 1818 1942 -19 1133 216 36 86 chr13 89078088 89078472 -12794697 + MLT1A1 LTR MaLR 1 365 0 627 227 156 0 chr13 89078971 89079125 -12794044 + MER5A DNA MER1_type 12 189 0 1624 248 74 7 chr13 89079291 89079722 -12793447 - L1ME1 LINE L1 -31 6135 5676 21 0 0 0 chr13 89081186 89081207 -12791962 + AT_rich Low_complexity Low_complexity 1 21 0 683 305 56 42 chr13 89081229 89081606 -12791563 - L2 LINE L2 -48 3265 2884 195 270 146 11 chr13 89081976 89082065 -12791104 - MIR SINE MIR -87 121 21 838 186 93 25 chr13 89082974 89083178 -12789991 - MER20 DNA MER1_type 0 219 2 1759 166 43 63 chr13 89084096 89084162 -12789007 - MLT1B LTR MaLR 0 390 324 2005 119 0 18 chr13 89084162 89084476 -12788693 + AluSc SINE Alu 1 309 0 1759 166 43 63 chr13 89084476 89084806 -12788363 - MLT1B LTR MaLR -66 324 1 203 162 0 0 chr13 89085246 89085283 -12787886 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 277 324 38 0 chr13 89085898 89086003 -12787166 + MIR SINE MIR 127 235 -27 2043 130 55 19 chr13 89086316 89086678 -12786491 - THE1C LTR MaLR 0 375 1 627 164 0 47 chr13 89087040 89087168 -12786001 + L1MB1 LINE L1 6036 6157 -11 384 217 57 38 chr13 89087446 89087462 -12785707 - L1MA10 LINE L1 -3 6331 6316 1195 228 96 16 chr13 89087462 89087878 -12785291 - L1ME2 LINE L1 -9 6155 5704 246 174 0 0 chr13 89088106 89088152 -12785017 + (TA)n Simple_repeat Simple_repeat 1 46 0 1949 156 0 0 chr13 89088311 89088617 -12784552 - AluSx SINE Alu 0 308 3 2296 104 0 9 chr13 89089503 89089819 -12783350 - AluSq SINE Alu 0 313 1 321 217 43 78 chr13 89090409 89090524 -12782645 - L2 LINE L2 -10 3303 3193 247 327 162 22 chr13 89090954 89091226 -12781943 + L3 LINE CR1 1247 1556 -21 345 271 63 50 chr13 89092168 89092389 -12780780 - L1ME4a LINE L1 -4 6117 5894 198 336 121 60 chr13 89092718 89093016 -12780153 + L2 LINE L2 2953 3268 -4 388 329 27 7 chr13 89093334 89093480 -12779689 + MIR3 SINE MIR 40 188 -20 313 119 0 0 chr13 89093480 89093522 -12779647 + AluSc SINE Alu 247 288 -11 252 0 0 0 chr13 89093645 89093673 -12779496 + (CA)n Simple_repeat Simple_repeat 2 29 0 221 303 0 0 chr13 89094182 89094248 -12778921 - L2 LINE L2 -2 3311 3246 1861 175 99 38 chr13 89095875 89096350 -12776819 + MLT1D LTR MaLR 1 504 -1 227 198 187 33 chr13 89096838 89096929 -12776240 + L1ME4a LINE L1 5968 6072 -49 379 276 43 0 chr13 89097259 89097375 -12775794 + MIR SINE MIR 46 166 -96 746 277 178 28 chr13 89099950 89100421 -12772748 - L2 LINE L2 0 3313 2773 671 261 98 36 chr13 89100443 89100749 -12772420 - L2 LINE L2 -691 2623 2299 198 293 61 24 chr13 89101037 89101119 -12772050 - L2 LINE L2 -309 2963 2879 420 322 28 33 chr13 89101526 89101740 -12771429 - MIR SINE MIR -32 230 18 1172 290 79 68 chr13 89102188 89102424 -12770745 + L2 LINE L2 2284 2516 -797 243 0 0 0 chr13 89102424 89102451 -12770718 + (CA)n Simple_repeat Simple_repeat 1 27 0 1172 290 79 68 chr13 89102451 89103209 -12769960 + L2 LINE L2 2516 3312 -1 243 342 34 26 chr13 89103324 89103441 -12769728 + L2 LINE L2 3178 3295 -18 24 53 0 0 chr13 89104202 89104240 -12768929 + AT_rich Low_complexity Low_complexity 1 38 0 448 311 102 34 chr13 89105999 89106234 -12766935 - MIR SINE MIR 0 262 12 489 286 86 40 chr13 89107116 89107465 -12765704 + Charlie7 DNA MER1_type 310 674 -1938 2251 90 10 0 chr13 89108965 89109254 -12763915 + AluSp SINE Alu 1 292 -21 223 268 0 18 chr13 89109454 89109510 -12763659 + L2 LINE L2 3214 3268 -4 25 0 0 0 chr13 89111602 89111627 -12761542 + AT_rich Low_complexity Low_complexity 1 25 0 215 282 153 0 chr13 89112206 89112291 -12760878 + L3 LINE CR1 918 1015 -562 533 266 0 28 chr13 89112313 89112456 -12760713 - MIR SINE MIR 0 262 124 2412 99 0 0 chr13 89112459 89112771 -12760398 + AluSx SINE Alu 1 312 0 281 259 296 16 chr13 89112962 89113151 -12760018 + L3 LINE CR1 1104 1345 -232 * 468 248 8 39 chr13 89113149 89113278 -12759891 + L2 LINE L2 3189 3313 0 325 358 36 15 chr13 89113295 89113432 -12759737 + L3 LINE CR1 1376 1515 -62 315 49 0 0 chr13 89113537 89113578 -12759591 + (CA)n Simple_repeat Simple_repeat 2 42 0 5180 135 42 62 chr13 89114935 89116563 -12756606 + L1MA4 LINE L1 4699 6292 -8 21 0 0 0 chr13 89117244 89117265 -12755904 + AT_rich Low_complexity Low_complexity 1 21 0 1935 171 44 3 chr13 89117542 89117905 -12755264 + MLT1B LTR MaLR 11 388 -2 216 0 0 0 chr13 89118773 89118797 -12754372 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 357 221 0 0 chr13 89120326 89120430 -12752739 + (TA)n Simple_repeat Simple_repeat 1 104 0 1748 266 43 8 chr13 89122085 89122573 -12750596 + MLT1D LTR MaLR 1 505 0 279 319 18 90 chr13 89125473 89125639 -12747530 + MIR3 SINE MIR 38 191 -17 254 270 65 113 chr13 89125870 89126055 -12747114 - MIR SINE MIR -23 239 64 1031 162 12 104 chr13 89126451 89126578 -12746591 + MER46A DNA MER2_type 2 94 -2637 2018 157 0 0 chr13 89126578 89126878 -12746291 - AluSx SINE Alu -7 305 6 1031 162 12 104 chr13 89126878 89127009 -12746160 + MER46A DNA MER2_type 94 236 0 371 21 21 0 chr13 89127023 89127071 -12746098 + (CA)n Simple_repeat Simple_repeat 2 50 0 236 179 0 0 chr13 89128029 89128085 -12745084 + L1MCc LINE L1 1413 1468 -4955 290 187 13 40 chr13 89128125 89128200 -12744969 + L1MCc LINE L1 1704 1776 -5165 317 228 156 49 chr13 89128320 89128667 -12744502 + L1MCc LINE L1 3107 3490 -3451 645 266 77 42 chr13 89128681 89129204 -12743965 + L1MCc LINE L1 3581 4121 -2820 1035 233 44 41 chr13 89129216 89129533 -12743636 + L1ME3A LINE L1 5842 6159 -11 2033 142 0 0 chr13 89130117 89130413 -12742756 + AluSx SINE Alu 5 300 -12 252 317 39 29 chr13 89130483 89130587 -12742582 + MIR SINE MIR 67 171 -91 478 126 175 0 chr13 89130587 89130690 -12742479 - L1MA10 LINE L1 -1 6333 6213 24 0 0 0 chr13 89130940 89130964 -12742205 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 89131929 89131952 -12741217 + (TG)n Simple_repeat Simple_repeat 1 23 0 321 219 21 31 chr13 89132545 89132641 -12740528 - L1PB4 LINE L1 0 6156 6062 1151 42 7 0 chr13 89133146 89133290 -12739879 + L1PA4 LINE L1 6008 6152 -3 30 83 0 0 chr13 89133641 89133713 -12739456 + AT_rich Low_complexity Low_complexity 1 72 0 232 304 158 18 chr13 89134588 89134759 -12738410 - MER117 DNA MER1_type -1 196 2 269 340 115 0 chr13 89135212 89135368 -12737801 + MIR SINE MIR 57 230 -32 369 186 41 36 chr13 89135557 89135680 -12737489 - L1MB8 LINE L1 -2 6182 6062 4433 228 97 90 chr13 89135888 89138157 -12735012 + L1MCa LINE L1 2 2287 -4139 194 31 0 62 chr13 89138641 89138673 -12734496 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 195 162 0 0 chr13 89138847 89138884 -12734285 + (CA)n Simple_repeat Simple_repeat 1 37 0 465 200 82 47 chr13 89139865 89140035 -12733134 + MER96B DNA MER1_type? 2 177 -240 23 0 0 0 chr13 89140642 89140665 -12732504 + AT_rich Low_complexity Low_complexity 1 23 0 267 197 0 49 chr13 89141470 89141531 -12731638 + MER5A DNA MER1_type 132 189 0 303 146 0 0 chr13 89142008 89142063 -12731106 + (GGA)n Simple_repeat Simple_repeat 3 57 0 1529 216 128 10 chr13 89142531 89142915 -12730254 - MLT1D LTR MaLR 0 505 77 2091 109 7 0 chr13 89143589 89143864 -12729305 + AluSq SINE Alu 4 280 -33 358 312 164 28 chr13 89143878 89144587 -12728582 - L2 LINE L2 -1939 1375 571 381 305 67 12 chr13 89145155 89145319 -12727850 + MIR3 SINE MIR 36 208 0 315 0 0 0 chr13 89146363 89146398 -12726771 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 380 141 0 chr13 89146514 89146635 -12726534 - MIR SINE MIR -118 144 7 1533 193 24 3 chr13 89146748 89147080 -12726089 - L1MB7 LINE L1 -8 6176 5838 2276 194 62 16 chr13 89147282 89148272 -12724897 - L1MB7 LINE L1 -365 5819 4787 210 222 0 0 chr13 89148293 89148347 -12724822 + (CATA)n Simple_repeat Simple_repeat 3 56 0 490 177 82 41 chr13 89148363 89148510 -12724659 - L1MB7 LINE L1 -1346 4800 4648 2275 111 30 3 chr13 89148646 89149007 -12724162 + L1MA1 LINE L1 5932 6302 0 22 35 0 0 chr13 89149007 89149036 -12724133 + AT_rich Low_complexity Low_complexity 1 29 0 502 288 135 69 chr13 89149779 89150157 -12723012 + L2 LINE L2 2908 3310 -3 22 0 0 0 chr13 89150269 89150291 -12722878 + AT_rich Low_complexity Low_complexity 1 22 0 802 216 26 32 chr13 89150338 89150528 -12722641 - MER5A DNA MER1_type 0 189 1 471 242 52 26 chr13 89150736 89150889 -12722280 - L1MA9 LINE L1 -37 6275 6119 296 275 117 0 chr13 89151241 89151361 -12721808 + MER94 DNA DNA 1 134 0 188 303 191 0 chr13 89151621 89151710 -12721459 + MIR SINE MIR 68 173 -89 312 275 66 60 chr13 89152700 89152782 -12720387 + L1ME4a LINE L1 5748 5828 -293 2480 49 0 13 chr13 89152782 89153086 -12720083 + AluY SINE Alu 2 301 -10 312 275 66 60 chr13 89153086 89153170 -12719999 + L1ME4a LINE L1 5828 5915 -206 326 321 73 0 chr13 89153194 89153331 -12719838 + L1ME4a LINE L1 5975 6121 0 22 0 0 0 chr13 89155860 89155882 -12717287 + AT_rich Low_complexity Low_complexity 1 22 0 379 287 30 73 chr13 89157380 89157544 -12715625 - L2 LINE L2 -1 3312 3156 36 77 0 0 chr13 89159251 89159329 -12713840 + AT_rich Low_complexity Low_complexity 1 78 0 398 333 95 27 chr13 89159438 89159660 -12713509 - MIR SINE MIR -12 250 14 1436 243 66 7 chr13 89159851 89160275 -12712894 - MLT1C LTR MaLR -7 460 12 187 300 0 0 chr13 89160845 89160895 -12712274 + L3b LINE CR1 1249 1298 -285 183 315 0 0 chr13 89160986 89161040 -12712129 + MIR SINE MIR 99 152 -110 868 234 104 110 chr13 89161561 89162222 -12710947 - MER20B DNA MER1_type 0 783 127 460 194 97 57 chr13 89162971 89163095 -12710074 + L2 LINE L2 3185 3313 0 435 230 178 20 chr13 89163322 89163474 -12709695 - MER20 DNA MER1_type 0 219 44 199 327 18 0 chr13 89163902 89163957 -12709212 - L2 LINE L2 -11 3302 3247 304 309 10 10 chr13 89164215 89164312 -12708857 + MIR SINE MIR 31 127 -81 3316 23 0 0 chr13 89167953 89168339 -12704830 + L1PA4 LINE L1 5765 6150 -5 315 286 91 62 chr13 89168708 89168918 -12704251 + MIR SINE MIR 47 262 0 214 264 115 11 chr13 89168949 89169036 -12704133 - MIR SINE MIR -74 188 93 22 0 0 0 chr13 89169701 89169723 -12703446 + AT_rich Low_complexity Low_complexity 1 22 0 2018 201 8 51 chr13 89170072 89170540 -12702629 + MLT1C LTR MaLR 20 467 0 2781 242 105 51 chr13 89171884 89173903 -12699266 + L1M2a LINE L1 1506 3344 -3823 955 220 0 4 chr13 89173914 89174141 -12699028 + L1M2a LINE L1 3842 4067 -3100 182 322 119 0 chr13 89174176 89174294 -12698875 - MIR SINE MIR -74 188 57 275 340 160 0 chr13 89174373 89174479 -12698690 + L2 LINE L2 3149 3271 -1 283 325 145 30 chr13 89175670 89175870 -12697299 + L2 LINE L2 2836 3058 -214 458 318 0 0 chr13 89175918 89176050 -12697119 + L2 LINE L2 2666 2797 -517 429 286 79 7 chr13 89176062 89176202 -12696967 + Zaphod DNA AcHobo 9 158 -3873 829 224 84 37 chr13 89176203 89176269 -12696900 + MER58A DNA MER1_type 1 62 -2358 2017 128 62 31 chr13 89176269 89176621 -12696548 - THE1B LTR MaLR 0 364 2 829 224 84 37 chr13 89176621 89176768 -12696401 + MER58A DNA MER1_type 62 224 0 * 1579 235 116 38 chr13 89176768 89177552 -12695617 + Zaphod DNA AcHobo 148 993 -3038 1115 274 42 7 chr13 89177547 89177955 -12695214 + Zaphod DNA AcHobo 3595 4016 -15 * 438 321 15 23 chr13 89178012 89178143 -12695026 + L2 LINE L2 3180 3309 -4 2241 112 0 0 chr13 89180075 89180387 -12692782 + AluSx SINE Alu 1 312 0 1329 128 12 74 chr13 89180485 89180728 -12692441 + MER46A DNA MER2_type 9 236 0 2297 78 0 3 chr13 89180744 89181040 -12692129 + AluY SINE Alu 1 295 -16 4148 160 15 19 chr13 89181208 89181985 -12691184 + LTR1 LTR ERV1 12 785 0 651 261 93 31 chr13 89182099 89182586 -12690583 + MLT1G3 LTR MaLR 3 552 -3 1863 146 0 4 chr13 89183855 89184129 -12689040 + AluSx SINE Alu 22 294 -18 24 53 0 0 chr13 89185017 89185055 -12688114 + AT_rich Low_complexity Low_complexity 1 38 0 1216 209 0 2 chr13 89185155 89185451 -12687718 - MER2 DNA MER2_type -1 344 1 21 36 0 0 chr13 89185588 89185616 -12687553 + AT_rich Low_complexity Low_complexity 1 28 0 288 245 0 0 chr13 89186155 89186208 -12686961 - MER2 DNA MER2_type -2 343 291 26 64 0 0 chr13 89186251 89186298 -12686871 + AT_rich Low_complexity Low_complexity 1 47 0 3862 110 14 14 chr13 89188080 89188717 -12684452 + L1M1 LINE L1 2410 3046 -4519 4169 122 17 126 chr13 89188793 89190339 -12682830 + pTR5 LTR ERV1 743 2606 0 431 74 0 0 chr13 89190341 89190395 -12682774 + AluSx SINE Alu 14 67 -246 3454 143 9 1 chr13 89190410 89191179 -12681990 + L1M1 LINE L1 5018 5793 -512 189 0 0 0 chr13 89191441 89191462 -12681707 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 337 367 50 5 chr13 89193078 89193296 -12679873 + HAL1b LINE L1 447 674 -674 336 197 0 150 chr13 89193312 89193439 -12679730 - MER102b DNA MER1_type -2 339 232 1648 132 0 48 chr13 89193500 89193773 -12679396 + AluSx SINE Alu 46 305 -7 1583 168 14 31 chr13 89194517 89194808 -12678361 - AluJo SINE Alu -25 287 2 4261 178 24 0 chr13 89195043 89195839 -12677330 + L1MA8 LINE L1 3598 4412 -1734 6698 137 51 26 chr13 89195839 89197040 -12676129 + Tigger3b DNA MER2_type 1 1231 0 5234 161 36 34 chr13 89197046 89198918 -12674251 + L1MA8 LINE L1 4417 6289 -2 220 323 113 57 chr13 89199262 89199491 -12673678 - L2 LINE L2 -527 2787 2546 626 191 9 9 chr13 89199921 89200068 -12673101 - FLAM_C SINE Alu 0 157 11 1117 301 92 20 chr13 89200076 89200884 -12672285 - L2 LINE L2 -8 3305 2447 2681 10 0 10 chr13 89203170 89203470 -12669699 + AluYa5 SINE Alu 1 297 -14 887 254 73 0 chr13 89203558 89203806 -12669363 + L2 LINE L2 2422 2687 -627 776 155 0 47 chr13 89203816 89204003 -12669166 + MER4E LTR ERV1 1 284 -588 * 1476 232 23 14 chr13 89204001 89204346 -12668823 + MER4D LTR ERV1 547 894 -9 422 311 130 21 chr13 89204403 89204912 -12668257 + L2 LINE L2 2746 3313 0 25 51 0 0 chr13 89205918 89205957 -12667212 + AT_rich Low_complexity Low_complexity 1 39 0 2276 42 0 35 chr13 89206751 89207038 -12666131 + AluY SINE Alu 17 293 -18 2267 84 0 44 chr13 89207900 89208221 -12664948 - AluY SINE Alu -4 307 1 230 283 160 9 chr13 89208537 89208643 -12664526 - MIR SINE MIR -71 191 70 299 333 7 27 chr13 89209286 89209436 -12663733 - MIR SINE MIR -1 261 115 284 247 86 0 chr13 89210890 89210971 -12662198 + MIR SINE MIR 73 160 -102 521 284 71 13 chr13 89211426 89211651 -12661518 - MER20B DNA MER1_type -1 782 545 2058 235 138 21 chr13 89211703 89212414 -12660755 + LTR50 LTR ERVL 1 794 -1 705 293 208 23 chr13 89212493 89212892 -12660277 - MER20B DNA MER1_type -258 525 53 5666 150 20 33 chr13 89213671 89214694 -12658475 + Tigger2 DNA MER2_type 1 1010 -1708 11316 144 40 8 chr13 89214707 89216583 -12656586 + Tigger2 DNA MER2_type 782 2718 0 207 0 0 0 chr13 89216602 89216625 -12656544 + (TG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr13 89216625 89216656 -12656513 + AT_rich Low_complexity Low_complexity 1 31 0 363 119 60 0 chr13 89216971 89217038 -12656131 - MER94 DNA DNA -3 131 61 384 348 35 26 chr13 89217110 89217337 -12655832 - MIR SINE MIR 0 262 34 255 316 13 13 chr13 89220211 89220287 -12652882 - MIR SINE MIR -166 96 21 33 97 0 0 chr13 89220342 89220445 -12652724 + AT_rich Low_complexity Low_complexity 1 103 0 304 316 33 72 chr13 89221320 89221440 -12651729 - MIR SINE MIR -38 224 110 2187 104 3 32 chr13 89221440 89221748 -12651421 + AluSx SINE Alu 1 299 -13 304 316 33 72 chr13 89221748 89221779 -12651390 - MIR SINE MIR -152 110 79 2246 115 7 0 chr13 89222330 89222625 -12650544 - AluSx SINE Alu -15 297 1 187 294 198 40 chr13 89224205 89224331 -12648838 + MER5A DNA MER1_type 28 173 -16 387 268 31 67 chr13 89224849 89225043 -12648126 - MIR SINE MIR 0 262 76 1824 156 0 33 chr13 89225123 89225430 -12647739 + AluJb SINE Alu 6 302 -10 28 48 0 0 chr13 89226750 89226792 -12646377 + AT_rich Low_complexity Low_complexity 1 42 0 2122 105 0 14 chr13 89226913 89227198 -12645971 + AluSq SINE Alu 1 281 -32 321 197 0 0 chr13 89227198 89227264 -12645905 + GA-rich Low_complexity Low_complexity 1 66 0 219 265 0 0 chr13 89228174 89228223 -12644946 - MIR SINE MIR -8 254 206 229 317 61 30 chr13 89228356 89228469 -12644700 - L2 LINE L2 -285 2987 2872 200 294 0 24 chr13 89229208 89229293 -12643876 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 1728 118 55 21 chr13 89229848 89230178 -12642991 + L1MA8 LINE L1 5948 6288 -3 2044 121 4 0 chr13 89230238 89230542 -12642627 - AluSx SINE Alu 0 307 3 23 0 0 0 chr13 89230761 89230784 -12642385 + AT_rich Low_complexity Low_complexity 1 23 0 608 288 13 35 chr13 89231041 89231267 -12641902 + MER58A DNA MER1_type 1 221 -3 188 340 94 9 chr13 89231878 89231984 -12641185 + L2 LINE L2 3183 3297 -16 2003 141 0 3 chr13 89232062 89232359 -12640810 + AluJb SINE Alu 6 301 -11 182 114 0 45 chr13 89232398 89232442 -12640727 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 433 264 183 29 chr13 89232680 89232888 -12640281 - MIR SINE MIR 0 262 23 246 235 0 0 chr13 89233165 89233216 -12639953 - L2 LINE L2 0 3272 3222 21 57 0 0 chr13 89233320 89233355 -12639814 + AT_rich Low_complexity Low_complexity 1 35 0 225 308 105 30 chr13 89233356 89233489 -12639680 - MIR SINE MIR -31 231 89 292 329 117 7 chr13 89234188 89234325 -12638844 + MER5B DNA MER1_type 27 178 0 1194 207 42 9 chr13 89234759 89235085 -12638084 - L1M3 LINE L1 -743 5403 5099 2309 178 48 57 chr13 89235087 89235611 -12637558 + L1MB1 LINE L1 5649 6167 -1 1258 159 17 8 chr13 89235997 89236236 -12636933 - L1P4 LINE L1 -665 5500 5260 992 179 104 9 chr13 89236238 89236450 -12636719 + L1PA16 LINE L1 5930 6161 -5 2077 111 7 0 chr13 89236451 89236757 -12636412 + AluSp SINE Alu 1 308 0 1997 249 82 23 chr13 89236761 89237455 -12635714 + L1MB3 LINE L1 5429 6163 -20 205 322 17 0 chr13 89238072 89238131 -12635038 + MER5B DNA MER1_type 9 68 -110 1003 290 159 49 chr13 89238132 89239274 -12633895 + L1MC4a LINE L1 5636 6903 -905 226 200 59 71 chr13 89239246 89239331 -12633838 - L1P5 LINE L1 -286 5865 5782 * 450 286 98 17 chr13 89239726 89240260 -12632909 + L1MC4 LINE L1 7261 7914 -128 362 254 70 9 chr13 89240477 89240591 -12632578 - MER5B DNA MER1_type -48 130 10 2386 84 0 0 chr13 89241328 89241626 -12631543 - AluSx SINE Alu -14 298 1 690 250 102 62 chr13 89241630 89241954 -12631215 + Charlie2 DNA MER1_type 2 338 -2524 401 259 49 18 chr13 89241987 89242211 -12630958 + Charlie2 DNA MER1_type 2231 2461 -401 219 327 0 59 chr13 89243121 89243222 -12629947 + L2 LINE L2 1881 1975 -1339 500 330 55 0 chr13 89243366 89243548 -12629621 - MIR SINE MIR 0 262 71 2818 161 32 23 chr13 89246708 89247273 -12625896 - L1MB4 LINE L1 -39 6141 5572 310 309 137 14 chr13 89247389 89247528 -12625641 - MIR SINE MIR -70 192 37 431 324 38 42 chr13 89247867 89248129 -12625040 - MIR SINE MIR -1 261 1 23 0 0 0 chr13 89248240 89248263 -12624906 + AT_rich Low_complexity Low_complexity 1 23 0 583 271 0 14 chr13 89248719 89248859 -12624310 + MIR SINE MIR 47 184 -78 1882 125 54 0 chr13 89249427 89249707 -12623462 + AluSq SINE Alu 1 295 -18 1061 172 0 0 chr13 89249714 89249904 -12623265 + AluSg/x SINE Alu 119 308 0 1555 42 31 0 chr13 89250276 89250469 -12622700 + L1PA5 LINE L1 5955 6153 -1 548 121 0 0 chr13 89250573 89250656 -12622513 - MLT1D LTR MaLR -3 502 420 1258 222 60 52 chr13 89250859 89251278 -12621891 - MLT1D LTR MaLR -83 422 1 337 278 91 43 chr13 89252433 89252620 -12620549 + L1MC/D LINE L1 5391 5586 -773 209 57 29 0 chr13 89252635 89252670 -12620499 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1807 134 34 59 chr13 89253127 89253447 -12619722 - AluSx SINE Alu 0 312 1 238 282 60 34 chr13 89254664 89254781 -12618388 - L2 LINE L2 -1 3312 3193 1507 197 67 0 chr13 89255528 89255644 -12617525 + AluJo SINE Alu 1 108 -204 324 0 0 0 chr13 89255644 89255680 -12617489 + (CA)n Simple_repeat Simple_repeat 1 36 0 1507 197 67 0 chr13 89255680 89255847 -12617322 + AluJo SINE Alu 108 303 -9 2101 134 0 0 chr13 89256283 89256574 -12616595 - AluSx SINE Alu -21 291 1 702 300 25 41 chr13 89256817 89257060 -12616109 - MIR SINE MIR -2 260 22 280 269 13 0 chr13 89258225 89258303 -12614866 - MER94 DNA DNA -35 99 21 230 295 50 79 chr13 89259268 89259407 -12613762 + MIR SINE MIR 3 137 -71 1057 171 0 22 chr13 89259408 89259589 -12613580 + AluSg/x SINE Alu 123 299 -13 356 242 121 104 chr13 89260300 89260482 -12612687 + MIR SINE MIR 73 257 -5 189 351 0 0 chr13 89260495 89260552 -12612617 - L2 LINE L2 -8 3264 3208 274 280 23 83 chr13 89261270 89261402 -12611767 - MLT1K LTR MaLR -283 305 182 910 206 0 0 chr13 89264201 89264356 -12608813 - FRAM SINE Alu -25 151 1 554 271 9 61 chr13 89265251 89265465 -12607704 + MLT1L LTR MaLR 27 229 -386 636 208 222 14 chr13 89265494 89265715 -12607454 + MLT1L LTR MaLR 325 591 -24 270 316 101 14 chr13 89267329 89267468 -12605701 - MIR3 SINE MIR -28 180 30 1670 129 70 4 chr13 89268700 89268971 -12604198 + AluSx SINE Alu 1 289 -23 23 0 0 0 chr13 89268971 89268994 -12604175 + AT_rich Low_complexity Low_complexity 1 23 0 311 254 0 0 chr13 89269215 89269282 -12603887 - MIR SINE MIR 0 262 196 52 64 0 0 chr13 89269315 89269409 -12603760 + AT_rich Low_complexity Low_complexity 1 94 0 301 277 12 0 chr13 89269508 89269591 -12603578 + MER103 DNA DNA 9 92 -74 270 365 70 32 chr13 89270248 89270404 -12602765 + MIR3 SINE MIR 4 165 -43 898 217 43 5 chr13 89270889 89271096 -12602073 + MER20 DNA MER1_type 1 215 -4 2018 120 17 10 chr13 89271670 89271971 -12601198 - AluSq SINE Alu -10 303 1 229 293 98 0 chr13 89272079 89272161 -12601008 - MIR SINE MIR -51 211 122 1853 161 90 0 chr13 89272447 89272801 -12600368 - MLT1B LTR MaLR -4 386 1 267 330 38 57 chr13 89273518 89273727 -12599442 + MIR SINE MIR 1 205 -57 316 188 62 0 chr13 89273769 89273849 -12599320 - L1MB4 LINE L1 -1 6179 6095 304 136 0 0 chr13 89273862 89273921 -12599248 - L1MA4 LINE L1 -282 6018 5960 376 362 13 0 chr13 89274020 89274172 -12598997 - MIR SINE MIR -6 256 103 30651 38 4 3 chr13 89274285 89278855 -12594314 + L1PA4 LINE L1 1581 6153 -2 2293 112 0 3 chr13 89279030 89279342 -12593827 + AluSx SINE Alu 1 311 -1 181 333 74 19 chr13 89279453 89279561 -12593608 - L2 LINE L2 -189 3083 2970 217 370 12 12 chr13 89279824 89279905 -12593264 + L2 LINE L2 3226 3306 -7 245 143 24 0 chr13 89281546 89281588 -12591581 + L2 LINE L2 3174 3216 -56 396 0 0 0 chr13 89281755 89281799 -12591370 + (GAA)n Simple_repeat Simple_repeat 2 45 0 211 261 91 80 chr13 89281807 89281895 -12591274 + L2 LINE L2 3173 3261 -52 21 0 0 0 chr13 89281896 89281917 -12591252 + AT_rich Low_complexity Low_complexity 1 21 0 280 331 32 16 chr13 89283446 89283570 -12589599 - L2 LINE L2 -19 3253 3128 354 253 167 53 chr13 89284174 89284324 -12588845 + MLT1I LTR MaLR 237 403 -6 473 209 136 0 chr13 89284774 89284884 -12588285 - MER3 DNA MER1_type -84 125 1 6323 25 11 0 chr13 89285133 89285909 -12587260 + L1PA4 LINE L1 5385 6168 0 295 207 37 37 chr13 89285910 89285992 -12587177 + L1MB5 LINE L1 5959 6040 -134 1376 141 42 0 chr13 89286019 89286260 -12586909 - L1MB3 LINE L1 -31 6152 5902 186 133 0 0 chr13 89286260 89286290 -12586879 + (A)n Simple_repeat Simple_repeat 1 30 0 29 0 0 0 chr13 89286343 89286372 -12586797 + AT_rich Low_complexity Low_complexity 1 29 0 2927 220 12 12 chr13 89286423 89287024 -12586145 - MER82 DNA MER2_type -52 601 1 1736 85 85 116 chr13 89287099 89287417 -12585752 + AluSx SINE Alu 1 308 -4 1167 155 0 6 chr13 89288381 89288562 -12584607 - AluSx SINE Alu -132 180 1 827 191 25 35 chr13 89289869 89290068 -12583101 + MER3 DNA MER1_type 5 201 -8 250 218 0 23 chr13 89290395 89290482 -12582687 + CT-rich Low_complexity Low_complexity 2 86 0 270 0 0 0 chr13 89292054 89292084 -12581085 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 735 176 0 0 chr13 89292084 89292203 -12580966 - FLAM_C SINE Alu -24 119 1 3985 167 35 23 chr13 89293105 89293959 -12579210 + L1MB1 LINE L1 5184 6051 -117 * 5560 171 20 16 chr13 89293945 89294205 -12578964 + L1PB4 LINE L1 4071 4328 -1828 1698 126 24 99 chr13 89294205 89294538 -12578631 - AluYb8 SINE Alu -10 308 1 5560 171 20 16 chr13 89294538 89294710 -12578459 + L1PB4 LINE L1 4328 4498 -1658 1688 158 26 10 chr13 89294710 89295014 -12578155 + L1PA16 LINE L1 5858 6166 0 5560 171 20 16 chr13 89295014 89296655 -12576514 + L1PB4 LINE L1 4498 6155 -1 1401 160 39 51 chr13 89296666 89296978 -12576191 + L1MA10 LINE L1 6026 6333 -1 2055 173 22 0 chr13 89298470 89298829 -12574340 - L1PB4 LINE L1 -1 6155 5789 21 0 0 0 chr13 89298902 89298923 -12574246 + AT_rich Low_complexity Low_complexity 1 21 0 409 302 272 5 chr13 89299605 89299807 -12573362 - MIR SINE MIR -4 258 3 2174 112 3 0 chr13 89300388 89300684 -12572485 - AluSx SINE Alu -15 297 1 629 277 50 0 chr13 89301103 89301262 -12571907 + MER58D DNA MER1_type 2 168 -218 462 168 0 175 chr13 89301294 89301431 -12571738 + MLT1D LTR MaLR 1 113 -513 990 246 57 8 chr13 89301431 89301695 -12571474 + MLT1C LTR MaLR 1 277 -190 662 160 9 0 chr13 89301849 89301955 -12571214 - MLT1D LTR MaLR -398 107 1 678 166 32 61 chr13 89301956 89302138 -12571031 + MLT1C LTR MaLR 304 463 -4 1292 227 19 88 chr13 89302143 89302566 -12570603 + MLT1D LTR MaLR 112 505 0 835 180 52 21 chr13 89302566 89302759 -12570410 + MER58D DNA MER1_type 188 386 0 28 29 0 0 chr13 89303225 89303260 -12569909 + AT_rich Low_complexity Low_complexity 1 35 0 185 271 0 42 chr13 89303586 89303634 -12569535 - L2 LINE L2 -1 3312 3267 282 330 73 39 chr13 89303805 89303984 -12569185 + MIR SINE MIR 3 187 -75 805 289 113 26 chr13 89304634 89305136 -12568033 + L1ME4a LINE L1 5342 5887 -234 27 0 0 0 chr13 89305148 89305175 -12567994 + AT_rich Low_complexity Low_complexity 1 27 0 184 378 113 11 chr13 89305756 89305941 -12567228 + MIR SINE MIR 6 209 -53 23 33 0 0 chr13 89306046 89306076 -12567093 + AT_rich Low_complexity Low_complexity 1 30 0 185 245 0 19 chr13 89308078 89308131 -12565038 - L2 LINE L2 0 3313 3262 472 293 82 62 chr13 89308415 89308671 -12564498 + MIR SINE MIR 2 262 0 1892 124 0 7 chr13 89308729 89309004 -12564165 + AluSx SINE Alu 1 273 -39 909 101 13 13 chr13 89309004 89309162 -12564007 + (GAAA)n Simple_repeat Simple_repeat 2 159 0 2423 153 33 0 chr13 89309698 89310096 -12563073 - MSTB LTR MaLR -15 411 1 261 254 0 60 chr13 89310230 89310297 -12562872 - MLT1K LTR MaLR -351 237 175 1101 203 29 0 chr13 89310371 89310578 -12562591 + MER20 DNA MER1_type 1 213 -6 1889 218 54 62 chr13 89310747 89311325 -12561844 + L1M4 LINE L1 11 583 -5959 934 202 142 45 chr13 89311325 89311662 -12561507 - MLT1A2 LTR MaLR -1 373 4 1819 206 61 46 chr13 89311669 89312144 -12561025 - MLT1A2-int LTR MaLR -6 1729 1248 283 197 45 30 chr13 89312182 89312248 -12560921 - MLT1A2-int LTR MaLR -993 742 676 2767 191 38 74 chr13 89312305 89313121 -12560048 - MLT1A2-int LTR MaLR -491 880 2 761 229 43 61 chr13 89313128 89313408 -12559761 - MLT1A2 LTR MaLR -6 368 94 2176 226 77 51 chr13 89313433 89314199 -12558970 + L1M4 LINE L1 581 1366 -5176 1338 106 30 0 chr13 89314306 89314505 -12558664 - L1PA10 LINE L1 -1 6167 5963 2384 274 27 29 chr13 89314506 89315648 -12557521 + L1M4 LINE L1 1353 2638 -4187 1071 155 104 0 chr13 89315651 89315844 -12557325 + AluJb SINE Alu 88 300 -12 1490 173 17 7 chr13 89316583 89316884 -12556285 - L1MA7 LINE L1 0 6291 5988 331 271 0 24 chr13 89317456 89317541 -12555628 + MIR3 SINE MIR 85 167 -41 436 250 23 11 chr13 89317611 89317787 -12555382 + (TA)n Simple_repeat Simple_repeat 2 179 0 261 268 217 56 chr13 89319382 89319580 -12553589 - MIR SINE MIR -1 261 32 306 196 75 37 chr13 89320054 89320161 -12553008 + MIR SINE MIR 81 191 -71 327 331 13 0 chr13 89320169 89320320 -12552849 + (TA)n Simple_repeat Simple_repeat 2 154 0 2466 53 3 7 chr13 89320863 89321167 -12552002 + AluY SINE Alu 9 311 0 2396 114 91 5 chr13 89321899 89322293 -12550876 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr13 89323618 89323649 -12549520 + AT_rich Low_complexity Low_complexity 1 31 0 1924 109 0 0 chr13 89324568 89324853 -12548316 - AluSg SINE Alu 0 311 27 411 341 39 28 chr13 89325238 89325417 -12547752 + MIR SINE MIR 82 262 0 450 0 0 0 chr13 89326019 89326069 -12547100 + (A)n Simple_repeat Simple_repeat 1 50 0 198 0 0 0 chr13 89326163 89326185 -12546984 + (CA)n Simple_repeat Simple_repeat 2 23 0 1937 139 3 3 chr13 89326433 89326721 -12546448 + AluSx SINE Alu 1 288 -24 2118 146 0 0 chr13 89327034 89327342 -12545827 + AluSg SINE Alu 1 308 -2 198 0 0 0 chr13 89327659 89327681 -12545488 + (A)n Simple_repeat Simple_repeat 1 22 0 249 355 81 16 chr13 89327760 89327884 -12545285 - MIR3 SINE MIR -5 203 72 507 274 142 5 chr13 89329045 89329235 -12543934 - LTR16A LTR ERVL -10 440 225 363 282 80 42 chr13 89329516 89329729 -12543440 - LTR16A1 LTR ERVL -236 221 1 1267 220 73 22 chr13 89329921 89330606 -12542563 + Charlie2 DNA MER1_type 2080 2845 -17 923 174 122 5 chr13 89334722 89334918 -12538251 + MER20 DNA MER1_type 1 219 0 248 290 75 21 chr13 89336311 89336404 -12536765 + MIR SINE MIR 56 153 -109 3538 157 28 8 chr13 89336561 89337211 -12535958 - L1MA6 LINE L1 -5 6295 5633 1492 72 8 38 chr13 89338965 89339200 -12533969 - L1MA3 LINE L1 -1 6304 6077 351 248 150 23 chr13 89340874 89341007 -12532162 + MIR3 SINE MIR 31 157 -51 276 53 0 0 chr13 89341643 89341681 -12531488 + (CA)n Simple_repeat Simple_repeat 1 38 0 220 315 123 34 chr13 89341816 89341962 -12531207 + L2 LINE L2 3154 3312 -1 184 269 75 86 chr13 89342125 89342218 -12530951 + L2 LINE L2 3173 3264 -8 748 314 124 22 chr13 89342493 89342952 -12530217 - L3 LINE CR1 -90 1487 982 651 118 0 0 chr13 89343813 89343906 -12529263 + FRAM SINE Alu 63 155 -21 613 306 12 6 chr13 89346193 89346366 -12526803 + MIR SINE MIR 12 185 -77 198 337 104 52 chr13 89346561 89347042 -12526127 + L2 LINE L2 1993 2498 -816 196 226 52 113 chr13 89347464 89347579 -12525590 + L2 LINE L2 3181 3288 -25 450 377 46 4 chr13 89348604 89348843 -12524326 - MIR SINE MIR -13 249 1 329 322 48 14 chr13 89349311 89349457 -12523712 - MIR SINE MIR -2 260 110 222 277 109 0 chr13 89349619 89349738 -12523431 + L2 LINE L2 2010 2141 -1173 267 367 38 63 chr13 89349961 89350012 -12523157 - L2 LINE L2 -19 3253 3202 1877 185 16 22 chr13 89350012 89350379 -12522790 + MLT1A1 LTR MaLR 1 365 0 267 367 38 63 chr13 89350379 89350485 -12522684 - L2 LINE L2 -70 3202 3100 262 376 36 0 chr13 89350950 89351088 -12522081 - MIR SINE MIR -74 134 8 484 316 71 28 chr13 89351770 89351982 -12521187 + MIR SINE MIR 42 262 0 646 250 140 46 chr13 89353004 89353164 -12520005 + L2 LINE L2 2955 3098 -215 2134 100 14 0 chr13 89353164 89353465 -12519704 - AluSq SINE Alu 0 305 1 646 250 140 46 chr13 89353465 89353631 -12519538 + L2 LINE L2 3098 3313 0 190 292 14 28 chr13 89353631 89353703 -12519466 - MIR3 SINE MIR -34 174 104 987 141 32 59 chr13 89354003 89354223 -12518946 + L1MB3 LINE L1 5916 6129 -54 230 150 0 0 chr13 89354259 89354299 -12518870 + L1MB3 LINE L1 6090 6129 -54 230 150 0 0 chr13 89354297 89354337 -12518832 + L1MB3 LINE L1 6090 6129 -54 518 152 0 0 chr13 89354525 89354617 -12518552 + L1MB3 LINE L1 6090 6181 -2 27 0 0 0 chr13 89354617 89354644 -12518525 + AT_rich Low_complexity Low_complexity 1 27 0 238 337 0 0 chr13 89355436 89355519 -12517650 + MER5A DNA MER1_type 4 86 -103 2399 191 36 46 chr13 89355778 89356338 -12516831 + MER41C LTR ERV1 1 554 0 354 179 179 0 chr13 89359438 89359522 -12513647 - MER5A DNA MER1_type -77 112 14 322 65 0 0 chr13 89360713 89360759 -12512410 + L1MA2 LINE L1 6128 6173 -131 344 258 108 82 chr13 89360938 89361206 -12511963 + L1MC/D LINE L1 5260 5534 -708 1967 172 20 32 chr13 89362361 89362762 -12510407 - MSTD LTR MaLR 0 396 1 755 262 71 73 chr13 89362906 89363330 -12509839 + MLT1J2 LTR MaLR 28 450 0 261 253 21 105 chr13 89363614 89363745 -12509424 + MIR SINE MIR 25 155 -86 210 367 42 25 chr13 89365426 89365546 -12507623 + L2 LINE L2 3151 3272 0 21 0 0 0 chr13 89365842 89365863 -12507306 + AT_rich Low_complexity Low_complexity 1 21 0 202 317 12 24 chr13 89366075 89366157 -12507012 - MIR SINE MIR -94 168 88 5883 115 2 11 chr13 89366654 89366786 -12506383 + L1PA13 LINE L1 4535 4667 -1496 180 0 0 0 chr13 89366786 89366806 -12506363 + (TA)n Simple_repeat Simple_repeat 2 21 0 5883 115 2 11 chr13 89366806 89368285 -12504884 + L1PA13 LINE L1 4667 6152 -11 252 0 0 0 chr13 89369584 89369612 -12503557 + (TG)n Simple_repeat Simple_repeat 2 29 0 580 230 16 0 chr13 89370597 89370723 -12502446 - MER103 DNA DNA -28 138 11 21 36 0 0 chr13 89370916 89370944 -12502225 + AT_rich Low_complexity Low_complexity 1 28 0 243 330 217 9 chr13 89372338 89372453 -12500716 + MIR SINE MIR 53 191 -71 1303 191 69 42 chr13 89372458 89372699 -12500470 + MER2 DNA MER2_type 2 256 -89 6962 60 18 0 chr13 89372699 89373737 -12499432 - L1PA7 LINE L1 0 6154 5117 1303 191 69 42 chr13 89373737 89373830 -12499339 + MER2 DNA MER2_type 256 345 0 1128 173 28 9 chr13 89374647 89374861 -12498308 - MER20 DNA MER1_type -1 218 1 1616 163 59 21 chr13 89376262 89376551 -12496618 + AluJb SINE Alu 2 301 -11 1890 150 65 0 chr13 89377374 89377667 -12495502 - AluSx SINE Alu 0 312 1 2206 127 36 30 chr13 89377954 89378316 -12494853 - THE1B LTR MaLR 0 364 1 186 281 73 37 chr13 89379047 89379129 -12494040 - MIR3 SINE MIR -15 193 109 216 0 0 0 chr13 89379403 89379427 -12493742 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 207 327 99 0 chr13 89379657 89379758 -12493411 + L2 LINE L2 3202 3312 -1 237 250 76 30 chr13 89379772 89379895 -12493274 - MIR SINE MIR -107 101 8 338 245 20 20 chr13 89380096 89380194 -12492975 + GA-rich Low_complexity Low_complexity 3 100 0 21 36 0 0 chr13 89383664 89383692 -12489477 + AT_rich Low_complexity Low_complexity 1 28 0 188 327 20 30 chr13 89384049 89384150 -12489019 - MER5A DNA MER1_type -82 107 8 319 301 115 16 chr13 89384168 89384351 -12488818 + MIR SINE MIR 52 252 -10 292 299 54 20 chr13 89384775 89385001 -12488168 - LTR33 LTR ERVL -237 284 8 241 324 124 28 chr13 89385627 89385772 -12487397 - MIR SINE MIR -56 206 48 21 0 0 0 chr13 89385849 89385870 -12487299 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr13 89385972 89386015 -12487154 + AT_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr13 89386526 89386556 -12486613 + (GA)n Simple_repeat Simple_repeat 1 30 0 251 283 103 21 chr13 89386925 89387158 -12486011 + HAL1b LINE L1 98 349 -999 26 30 0 0 chr13 89387167 89387200 -12485969 + AT_rich Low_complexity Low_complexity 1 33 0 295 308 34 20 chr13 89387363 89387509 -12485660 + HAL1b LINE L1 395 542 -806 313 295 36 0 chr13 89387693 89387832 -12485337 + HAL1b LINE L1 688 831 -517 298 354 30 0 chr13 89388172 89388271 -12484898 + L2 LINE L2 3148 3249 -23 308 226 63 121 chr13 89388284 89388474 -12484695 + L1MC4a LINE L1 5750 5928 -1880 208 284 137 10 chr13 89389418 89389520 -12483649 + L3b LINE CR1 1265 1379 -204 595 233 0 9 chr13 89389561 89389723 -12483446 - FLAM_A SINE Alu 0 161 1 717 219 0 0 chr13 89389758 89389886 -12483283 + FLAM_A SINE Alu 1 128 -5 197 225 90 56 chr13 89389973 89390062 -12483107 + L2 LINE L2 3141 3232 -40 302 333 47 18 chr13 89390322 89390493 -12482676 - L1ME4a LINE L1 -215 5906 5731 329 314 33 0 chr13 89390498 89390619 -12482550 - L1ME4a LINE L1 -435 5686 5562 244 349 60 52 chr13 89391361 89391613 -12481556 + L2 LINE L2 2838 3091 -181 651 322 99 25 chr13 89391833 89392550 -12480619 + L2 LINE L2 2530 3306 -7 573 265 0 110 chr13 89392578 89392797 -12480372 - MIR SINE MIR 0 262 68 1325 167 25 25 chr13 89393768 89394007 -12479162 + AluJb SINE Alu 69 307 -5 272 269 0 15 chr13 89394012 89394079 -12479090 + GA-rich Low_complexity Low_complexity 3 68 0 23 0 0 0 chr13 89394647 89394670 -12478499 + AT_rich Low_complexity Low_complexity 1 23 0 39 0 0 0 chr13 89394923 89394962 -12478207 + AT_rich Low_complexity Low_complexity 1 39 0 456 19 0 0 chr13 89395272 89395325 -12477844 + (TC)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr13 89395363 89395386 -12477783 + AT_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr13 89396336 89396366 -12476803 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr13 89396370 89396392 -12476777 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 255 61 0 0 chr13 89396391 89396424 -12476745 + (TA)n Simple_repeat Simple_repeat 2 34 0 189 242 232 32 chr13 89398262 89398357 -12474812 - MIR SINE MIR -62 146 33 231 204 0 0 chr13 89398664 89398713 -12474456 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 200 35 35 0 chr13 89399228 89399257 -12473912 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 239 139 0 0 chr13 89399625 89399661 -12473508 - MIR SINE MIR -32 230 195 218 313 22 37 chr13 89401770 89401904 -12471265 + L2 LINE L2 2222 2353 -961 2179 99 44 0 chr13 89402097 89402390 -12470779 - AluSp SINE Alu -7 306 1 1061 287 65 18 chr13 89403088 89403429 -12469740 - MLT1J LTR MaLR -154 357 1 25 0 0 0 chr13 89403647 89403672 -12469497 + AT_rich Low_complexity Low_complexity 1 25 0 459 266 122 53 chr13 89403825 89404013 -12469156 + MIR SINE MIR 54 254 -8 28 29 0 0 chr13 89404538 89404573 -12468596 + AT_rich Low_complexity Low_complexity 1 35 0 296 209 12 0 chr13 89404914 89405000 -12468169 + CT-rich Low_complexity Low_complexity 1 87 0 550 239 126 6 chr13 89405729 89405888 -12467281 - MIR SINE MIR -11 251 74 189 0 0 0 chr13 89407016 89407037 -12466132 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 1147 36 0 0 chr13 89407037 89407176 -12465993 + L1PA5 LINE L1 6015 6153 -1 350 271 0 0 chr13 89407910 89407980 -12465189 + L2 LINE L2 3203 3272 0 22 0 0 0 chr13 89408598 89408620 -12464549 + AT_rich Low_complexity Low_complexity 1 22 0 2136 132 0 0 chr13 89408620 89408916 -12464253 - AluSx SINE Alu -11 301 6 968 263 94 23 chr13 89409411 89409719 -12463450 - MER58B DNA MER1_type -11 330 1 237 393 8 16 chr13 89409719 89409841 -12463328 + L2 LINE L2 3148 3268 -4 387 127 0 0 chr13 89409910 89409973 -12463196 + (TC)n Simple_repeat Simple_repeat 2 64 0 1803 193 20 11 chr13 89410134 89410492 -12462677 + MLT1A1 LTR MaLR 5 365 0 243 0 0 0 chr13 89412315 89412342 -12460827 + (A)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr13 89414503 89414527 -12458642 + AT_rich Low_complexity Low_complexity 1 24 0 514 247 192 6 chr13 89414798 89414980 -12458189 + MIR SINE MIR 37 252 -10 181 345 0 0 chr13 89415124 89415179 -12457990 - MIR3 SINE MIR -12 196 142 204 337 71 2 chr13 89415591 89415721 -12457448 - MIR SINE MIR -58 150 30 2832 173 15 26 chr13 89417047 89417632 -12455537 + L1MC3 LINE L1 7199 7777 -8 1236 171 0 46 chr13 89417644 89417861 -12455308 + AluJo SINE Alu 5 211 -101 27 0 0 0 chr13 89418395 89418422 -12454747 + AT_rich Low_complexity Low_complexity 1 27 0 282 383 40 16 chr13 89420391 89420644 -12452525 + L2 LINE L2 2271 2529 -785 306 319 50 17 chr13 89420664 89420783 -12452386 + L2 LINE L2 3186 3308 -5 405 39 0 0 chr13 89420950 89421001 -12452168 + (CA)n Simple_repeat Simple_repeat 1 51 0 2516 274 220 23 chr13 89421679 89421863 -12451306 + L2 LINE L2 1142 1289 -2024 369 0 0 0 chr13 89421863 89421904 -12451265 + (CA)n Simple_repeat Simple_repeat 1 41 0 2516 274 220 23 chr13 89421904 89423525 -12449644 + L2 LINE L2 1289 3311 -2 304 289 8 96 chr13 89423616 89423772 -12449397 - MIR SINE MIR -66 142 19 234 0 0 0 chr13 89424128 89424154 -12449015 + (CAT)n Simple_repeat Simple_repeat 2 27 0 2233 221 90 12 chr13 89424561 89425059 -12448110 + MLT1F LTR MaLR 6 542 0 264 335 103 52 chr13 89426300 89426494 -12446675 - L2 LINE L2 -40 3232 3029 1383 225 101 71 chr13 89426879 89427464 -12445705 + MLT1E2 LTR MaLR 5 626 0 221 274 0 0 chr13 89427605 89427656 -12445513 - MIR SINE MIR -12 250 200 645 220 27 13 chr13 89427704 89427854 -12445315 - MIR SINE MIR -31 231 80 254 246 37 119 chr13 89427962 89428096 -12445073 - MIR SINE MIR -62 146 24 579 267 93 12 chr13 89428606 89428778 -12444391 + MIR3 SINE MIR 16 201 -7 195 69 0 0 chr13 89428953 89428982 -12444187 + (A)n Simple_repeat Simple_repeat 1 29 0 317 162 15 0 chr13 89429137 89429205 -12443964 + (CA)n Simple_repeat Simple_repeat 2 70 0 247 298 114 9 chr13 89430042 89430156 -12443013 + MIR3 SINE MIR 68 193 -15 351 121 0 0 chr13 89430665 89430723 -12442446 + (TC)n Simple_repeat Simple_repeat 2 59 0 222 37 0 0 chr13 89431066 89431093 -12442076 + (CA)n Simple_repeat Simple_repeat 2 28 0 315 279 66 12 chr13 89432026 89432148 -12441021 + MIR SINE MIR 16 142 -66 201 39 0 0 chr13 89432749 89432775 -12440394 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 238 330 45 0 chr13 89433403 89433491 -12439678 - L2 LINE L2 -239 3033 2942 298 333 62 0 chr13 89434522 89434618 -12438551 - L2 LINE L2 -22 3250 3149 227 200 70 0 chr13 89434936 89435036 -12438133 + (TA)n Simple_repeat Simple_repeat 2 108 0 210 171 0 0 chr13 89435059 89435100 -12438069 + (CATA)n Simple_repeat Simple_repeat 4 44 0 22 0 0 0 chr13 89435621 89435643 -12437526 + AT_rich Low_complexity Low_complexity 1 22 0 554 160 104 0 chr13 89436380 89436505 -12436664 + L1MA7 LINE L1 6153 6290 -1 2380 193 11 2 chr13 89438390 89438852 -12434317 - MLT1C LTR MaLR 0 467 2 210 254 0 90 chr13 89438884 89438951 -12434218 + L2 LINE L2 3253 3313 0 195 162 0 0 chr13 89439896 89439933 -12433236 + (TA)n Simple_repeat Simple_repeat 2 38 0 213 250 0 0 chr13 89440177 89440217 -12432952 + MIR SINE MIR 38 77 -131 210 390 30 18 chr13 89441111 89441275 -12431894 + MIR3 SINE MIR 13 178 -30 447 19 0 0 chr13 89443991 89444043 -12429126 + (TG)n Simple_repeat Simple_repeat 2 53 0 627 259 8 0 chr13 89444315 89444446 -12428723 + MIR SINE MIR 14 145 -117 237 336 40 40 chr13 89444454 89444579 -12428590 - L2 LINE L2 -1 3271 3147 * 254 314 12 0 chr13 89444577 89444663 -12428506 + MIR SINE MIR 170 256 -6 272 271 106 0 chr13 89444707 89444792 -12428377 - MIR SINE MIR -77 185 92 423 256 124 134 chr13 89445464 89445957 -12427212 + L2 LINE L2 2822 3309 -4 880 77 0 77 chr13 89446644 89446839 -12426330 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1746 183 13 13 chr13 89447589 89447901 -12425268 + AluJb SINE Alu 1 312 0 218 56 28 0 chr13 89447930 89447966 -12425203 + (TAAAAA)n Simple_repeat Simple_repeat 4 40 0 286 298 21 78 chr13 89448529 89448670 -12424499 + L2 LINE L2 3116 3248 -24 2090 272 123 83 chr13 89448937 89450501 -12422668 + L2 LINE L2 30 1656 -1658 595 319 56 30 chr13 89450758 89451062 -12422107 + L2 LINE L2 3002 3313 0 563 272 116 18 chr13 89451080 89451304 -12421865 + MIR SINE MIR 5 250 -12 239 333 89 24 chr13 89452107 89452230 -12420939 + MIR SINE MIR 23 153 -55 263 241 58 0 chr13 89455376 89455463 -12417706 - HAL1 LINE L1 -1210 1297 1206 234 234 0 78 chr13 89455673 89455750 -12417419 + HAL1 LINE L1 231 301 -2206 14606 138 21 7 chr13 89455767 89458151 -12415018 + Tigger1 DNA MER2_type 1 2418 0 886 292 147 60 chr13 89458421 89458843 -12414326 + HAL1 LINE L1 576 960 -1547 2090 130 16 3 chr13 89458843 89459151 -12414018 + AluSx SINE Alu 1 312 0 886 292 147 60 chr13 89459151 89459223 -12413946 + HAL1 LINE L1 960 1024 -1483 752 145 0 0 chr13 89459223 89459347 -12413822 + L1MA1 LINE L1 6179 6302 0 886 292 147 60 chr13 89459347 89459859 -12413310 + HAL1 LINE L1 1024 1670 -837 234 62 0 0 chr13 89460542 89460574 -12412595 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 369 0 0 chr13 89460982 89461047 -12412122 - L2 LINE L2 -1 3271 3207 204 340 117 11 chr13 89461513 89461607 -12411562 - L2 LINE L2 0 3272 3169 210 336 31 4 chr13 89462435 89462549 -12410620 + MIR SINE MIR 22 141 -67 359 294 11 0 chr13 89463620 89463712 -12409457 - L2 LINE L2 -564 2750 2658 192 385 0 12 chr13 89465173 89465256 -12407913 + MIR SINE MIR 49 130 -78 569 335 81 52 chr13 89465797 89466340 -12406829 + L3 LINE CR1 327 885 -692 286 358 50 17 chr13 89466477 89466597 -12406572 - MIR SINE MIR -137 125 2 244 115 0 39 chr13 89466715 89466767 -12406402 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 242 239 86 17 chr13 89466805 89466922 -12406247 + L1ME4a LINE L1 5991 6115 -6 233 333 13 0 chr13 89467102 89467180 -12405989 + L3 LINE CR1 1123 1201 -376 278 281 45 0 chr13 89467315 89467404 -12405765 - L2 LINE L2 -22 3291 3199 373 209 45 73 chr13 89468734 89468844 -12404325 + MER5A DNA MER1_type 1 107 -82 1011 183 14 14 chr13 89469087 89469306 -12403863 + MER20 DNA MER1_type 1 219 0 1399 130 8 42 chr13 89470267 89470505 -12402664 + AluJo SINE Alu 71 300 -12 1725 221 136 18 chr13 89471588 89472095 -12401074 - MLT1F1 LTR MaLR 0 567 1 432 0 0 0 chr13 89472354 89472402 -12400767 + (CA)n Simple_repeat Simple_repeat 2 49 0 2630 30 0 0 chr13 89472642 89472942 -12400227 + AluY SINE Alu 1 300 -11 451 320 201 16 chr13 89473335 89473942 -12399227 + L2 LINE L2 2037 2755 -559 2458 79 3 41 chr13 89474085 89474454 -12398715 + MER4A LTR ERV1 3 357 -307 1459 118 22 22 chr13 89474492 89474720 -12398449 + MER4A LTR ERV1 355 582 -82 561 45 0 0 chr13 89474710 89474776 -12398393 - MER4A LTR ERV1 -481 183 118 * 686 75 21 0 chr13 89474772 89474865 -12398304 + MER4B LTR ERV1 516 610 0 300 352 75 72 chr13 89474943 89475264 -12397905 + L2 LINE L2 2949 3270 -2 23 33 0 0 chr13 89476866 89476896 -12396273 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr13 89477040 89477061 -12396108 + (TA)n Simple_repeat Simple_repeat 1 21 0 28 29 0 0 chr13 89477561 89477596 -12395573 + AT_rich Low_complexity Low_complexity 1 35 0 790 291 66 9 chr13 89477619 89477846 -12395323 + MIR SINE MIR 12 251 -11 26 74 0 0 chr13 89478214 89478268 -12394901 + AT_rich Low_complexity Low_complexity 1 54 0 3352 85 15 8 chr13 89478985 89479456 -12393713 + L1PA10 LINE L1 5695 6168 0 222 37 0 0 chr13 89480983 89481010 -12392159 + (CA)n Simple_repeat Simple_repeat 1 27 0 202 268 54 18 chr13 89481261 89481317 -12391852 + L3 LINE CR1 1083 1140 -437 180 403 8 8 chr13 89481755 89481874 -12391295 + L2 LINE L2 2191 2309 -1005 497 238 39 55 chr13 89481901 89482082 -12391087 - MLT1J LTR MaLR 0 511 334 213 315 19 46 chr13 89483451 89483559 -12389610 - MIR SINE MIR -109 153 49 353 331 25 16 chr13 89485445 89485566 -12387603 + MIR SINE MIR 32 153 -109 215 250 0 15 chr13 89485840 89485908 -12387261 + (TA)n Simple_repeat Simple_repeat 1 67 0 216 0 0 0 chr13 89486708 89486732 -12386437 + (A)n Simple_repeat Simple_repeat 1 24 0 2538 189 15 27 chr13 89487134 89487683 -12385486 - MLT1F LTR MaLR 0 542 1 303 370 33 5 chr13 89487736 89487887 -12385282 + MIR SINE MIR 6 147 -61 358 273 39 117 chr13 89487937 89488296 -12384873 + MLT1I LTR MaLR 73 403 -6 180 275 75 12 chr13 89488315 89488395 -12384774 + MIR SINE MIR 172 256 -6 219 284 134 22 chr13 89488399 89488533 -12384636 + MIR SINE MIR 104 252 -10 183 333 74 0 chr13 89489184 89489265 -12383904 + L2 LINE L2 3161 3247 -25 2325 122 31 0 chr13 89489978 89490331 -12382838 + THE1B LTR MaLR 1 364 0 255 305 110 0 chr13 89491197 89491279 -12381890 + L2 LINE L2 3150 3240 -32 596 139 117 67 chr13 89491843 89492023 -12381146 + MER53 DNA DNA 1 189 0 385 357 54 0 chr13 89492416 89492601 -12380568 - MIR SINE MIR -20 242 48 438 268 33 59 chr13 89493351 89493421 -12379748 + L3 LINE CR1 1427 1497 -80 843 236 6 6 chr13 89493421 89493599 -12379570 - MER5B DNA MER1_type 0 178 1 438 268 33 59 chr13 89493599 89493681 -12379488 + L3 LINE CR1 1497 1575 -2 231 349 39 85 chr13 89493880 89494009 -12379160 - L2 LINE L2 -4 3268 3146 477 0 0 0 chr13 89494242 89494295 -12378874 + (TA)n Simple_repeat Simple_repeat 1 53 0 1337 178 49 4 chr13 89494527 89494791 -12378378 + L1MC1 LINE L1 6058 6333 0 378 57 0 0 chr13 89495003 89495056 -12378113 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 282 255 0 0 chr13 89495807 89495901 -12377268 + (TA)n Simple_repeat Simple_repeat 2 95 0 189 195 0 0 chr13 89495922 89495963 -12377206 + (CATA)n Simple_repeat Simple_repeat 3 43 0 2090 144 52 3 chr13 89497285 89497633 -12375536 - MER47A DNA MER2_type -1 365 1 1761 213 40 3 chr13 89497678 89498030 -12375139 + MLT1A1 LTR MaLR 1 365 0 4617 172 47 2 chr13 89498317 89499536 -12373633 + L1MB7 LINE L1 4904 6175 -9 22 70 0 0 chr13 89499628 89499671 -12373498 + AT_rich Low_complexity Low_complexity 1 43 0 222 387 17 40 chr13 89500831 89501004 -12372165 + L2 LINE L2 2890 3058 -214 1384 263 65 35 chr13 89502890 89503369 -12369800 + LTR40a LTR ERVL 25 517 -2 956 252 45 26 chr13 89503441 89503754 -12369415 + L1ME2 LINE L1 5835 6153 -11 484 327 102 22 chr13 89503918 89504144 -12369025 + MIR SINE MIR 18 261 -1 326 348 116 31 chr13 89506340 89506762 -12366407 + L2 LINE L2 2807 3264 -8 213 294 29 0 chr13 89506835 89506903 -12366266 - MIR3 SINE MIR -11 197 128 275 282 36 18 chr13 89507192 89507302 -12365867 + MIR3 SINE MIR 91 202 -6 460 273 47 23 chr13 89507395 89507567 -12365602 - MIR3 SINE MIR -3 205 30 1845 171 7 3 chr13 89510378 89510670 -12362499 - AluJb SINE Alu -18 294 2 25 0 0 0 chr13 89510718 89510743 -12362426 + AT_rich Low_complexity Low_complexity 1 25 0 321 130 0 58 chr13 89510743 89510812 -12362357 - L1MA1 LINE L1 0 6302 6238 525 175 167 9 chr13 89510816 89510930 -12362239 - FLAM_A SINE Alu -1 132 1 219 356 52 0 chr13 89511348 89511463 -12361706 + L2 LINE L2 2507 2627 -687 342 0 0 0 chr13 89512648 89512686 -12360483 + (TG)n Simple_repeat Simple_repeat 2 39 0 255 23 68 0 chr13 89513501 89513545 -12359624 + (TA)n Simple_repeat Simple_repeat 1 47 0 347 251 103 126 chr13 89514705 89515199 -12357970 + L1M2 LINE L1 650 1132 -5717 327 146 0 0 chr13 89516683 89516738 -12356431 + (A)n Simple_repeat Simple_repeat 1 55 0 189 121 0 0 chr13 89517233 89517266 -12355903 + (CCCCAG)n Simple_repeat Simple_repeat 3 35 0 23 54 0 0 chr13 89518192 89518229 -12354940 + AT_rich Low_complexity Low_complexity 1 37 0 196 233 47 0 chr13 89519259 89519302 -12353867 - L2 LINE L2 -18 3295 3251 245 267 0 58 chr13 89519542 89519628 -12353541 - L2 LINE L2 0 3272 3192 868 268 78 43 chr13 89520217 89520613 -12352556 + MLT1J LTR MaLR 45 454 -57 1567 198 54 20 chr13 89520615 89520968 -12352201 - MLT1A1 LTR MaLR 0 365 1 5250 136 35 10 chr13 89521874 89522534 -12350635 - L1PA16 LINE L1 -15 6151 5473 2176 113 0 10 chr13 89522534 89522843 -12350326 - AluSc SINE Alu -3 306 1 5250 136 35 10 chr13 89522843 89523220 -12349949 - L1PA16 LINE L1 -693 5473 5107 283 119 0 0 chr13 89523221 89523263 -12349906 + 5S rRNA rRNA 5 46 -75 721 266 131 4 chr13 89523357 89523594 -12349575 + LTR16C LTR ERVL 225 491 0 293 259 98 49 chr13 89524790 89524933 -12348236 + MLT2E LTR ERVL 32 181 -447 233 303 38 76 chr13 89526877 89527009 -12346160 + MER91A DNA MER1_type 49 175 -21 907 292 56 45 chr13 89527488 89527933 -12345236 - LTR33 LTR ERVL -57 464 15 213 200 0 0 chr13 89527970 89528005 -12345164 + (ATG)n Simple_repeat Simple_repeat 2 36 0 473 231 82 30 chr13 89528014 89528148 -12345021 - MIR SINE MIR -50 212 72 332 312 150 47 chr13 89528570 89528804 -12344365 - MIR SINE MIR -3 259 2 2281 253 91 5 chr13 89529204 89530058 -12343111 - L1ME3 LINE L1 -13 6218 5290 1339 258 91 35 chr13 89530213 89530797 -12342372 - L1ME3 LINE L1 -2605 3610 2957 1637 99 0 5 chr13 89530797 89531008 -12342161 + AluY SINE Alu 85 294 -17 1339 258 91 35 chr13 89531008 89531313 -12341856 - L1ME3 LINE L1 -3258 2957 2671 6855 205 35 19 chr13 89531315 89533066 -12340103 - Charlie5 DNA MER1_type 0 2624 844 2063 127 10 3 chr13 89533066 89533358 -12339811 + AluSq SINE Alu 1 294 -19 6855 205 35 19 chr13 89533358 89533402 -12339767 - Charlie5 DNA MER1_type -1780 844 802 780 287 99 25 chr13 89533664 89534489 -12338680 - L1ME3 LINE L1 -4722 1674 789 263 298 127 49 chr13 89534801 89535147 -12338022 - L1ME3 LINE L1 -5678 527 155 6349 174 0 12 chr13 89535422 89537514 -12335655 + L1PA14 LINE L1 4093 6161 0 1782 277 110 32 chr13 89537703 89539085 -12334084 + L1ME3A LINE L1 4185 5762 -408 479 44 11 165 chr13 89539085 89539176 -12333993 + MADE1 DNA Mariner 1 77 -3 1782 277 110 32 chr13 89539176 89539619 -12333550 + L1ME3A LINE L1 5762 6169 -1 349 326 151 5 chr13 89540225 89540443 -12332726 - MIR SINE MIR -1 261 12 1612 188 18 42 chr13 89541019 89541402 -12331767 - MLT1A2 LTR MaLR 0 374 1 353 39 0 19 chr13 89541997 89542049 -12331120 + (TTATA)n Simple_repeat Simple_repeat 2 52 0 864 227 154 15 chr13 89542119 89542449 -12330720 - L1ME3A LINE L1 -5 6165 5790 633 209 0 31 chr13 89542547 89542676 -12330493 - AluJb SINE Alu -187 125 1 310 304 30 25 chr13 89542721 89542958 -12330211 - L1M2c LINE L1 -3678 3110 2873 1280 143 88 11 chr13 89543178 89543450 -12329719 - L1MA8 LINE L1 -5 6286 5994 7146 224 45 82 chr13 89543453 89545894 -12327275 - L1M2c LINE L1 -4347 2441 4 590 126 36 0 chr13 89545897 89546008 -12327161 - L1M2 LINE L1 -860 5440 5326 6240 178 15 2 chr13 89546114 89547305 -12325864 - L1M2 LINE L1 -813 5333 4127 267 279 87 35 chr13 89547405 89547577 -12325592 - LTR33 LTR ERVL -27 494 314 225 146 42 21 chr13 89547679 89547727 -12325442 - LTR33 LTR ERVL -471 50 2 605 278 54 35 chr13 89548046 89548437 -12324732 - HAL1 LINE L1 -886 1857 1263 1909 159 7 0 chr13 89549094 89549389 -12323780 - AluSx SINE Alu -15 297 1 233 179 0 0 chr13 89549796 89549835 -12323334 - MLT1K LTR MaLR -8 580 542 2112 60 3 39 chr13 89550366 89550648 -12322521 + AluY SINE Alu 36 307 -4 391 132 0 0 chr13 89551460 89551536 -12321633 - L1MA8 LINE L1 -7 6284 6209 228 67 0 0 chr13 89551846 89551876 -12321293 + (A)n Simple_repeat Simple_repeat 1 30 0 472 324 17 46 chr13 89551974 89552147 -12321022 - MLT1I LTR MaLR -176 233 66 709 190 107 0 chr13 89553090 89553295 -12319874 - L1M2 LINE L1 -2865 3281 3055 2096 129 0 10 chr13 89553553 89553864 -12319305 + AluSx SINE Alu 1 308 -4 2242 97 0 25 chr13 89553864 89554183 -12318986 + AluSx SINE Alu 1 311 -1 3770 55 38 0 chr13 89554386 89554858 -12318311 - LTR2B LTR ERV1 0 490 1 1832 224 148 51 chr13 89554861 89555681 -12317488 - L1MC5 LINE L1 -439 7522 6624 261 0 0 0 chr13 89555683 89555712 -12317457 + (CA)n Simple_repeat Simple_repeat 1 29 0 3451 221 118 18 chr13 89556862 89557914 -12315255 + L1PB2 LINE L1 7 1163 -5700 14913 194 13 26 chr13 89557931 89559455 -12313714 + L1PB2 LINE L1 1332 2874 -3993 2166 118 10 0 chr13 89559455 89559771 -12313398 + AluSq SINE Alu 1 319 0 14913 194 13 26 chr13 89559771 89563795 -12309374 + L1PB2 LINE L1 2874 6853 -14 346 157 0 0 chr13 89564478 89564529 -12308640 - AluSc SINE Alu -7 292 242 2246 91 3 7 chr13 89564628 89564924 -12308245 - AluSc SINE Alu -14 295 1 2175 101 52 30 chr13 89564996 89565363 -12307806 + THE1C LTR MaLR 1 375 0 243 348 76 0 chr13 89565623 89565781 -12307388 + MER117 DNA MER1_type 1 170 -27 2040 181 6 3 chr13 89566038 89566403 -12306766 - MER47A DNA MER2_type 0 366 1 197 398 8 0 chr13 89566408 89566536 -12306633 - L2 LINE L2 -1134 2180 2052 604 336 77 66 chr13 89566536 89566803 -12306366 - L2 LINE L2 -1495 1819 1556 411 101 13 38 chr13 89566803 89566882 -12306287 - L1PA11 LINE L1 -4 6170 6094 604 336 77 66 chr13 89566882 89567353 -12305816 - L2 LINE L2 -1758 1556 1073 22 35 0 0 chr13 89567353 89567382 -12305787 + AT_rich Low_complexity Low_complexity 1 29 0 506 239 162 12 chr13 89567452 89567619 -12305550 + LTR33 LTR ERVL 15 206 -315 5169 76 19 3 chr13 89567744 89568808 -12304361 - L1PA8 LINE L1 -208 5964 4883 309 212 15 0 chr13 89568911 89568977 -12304192 - MER58B DNA MER1_type -6 335 269 421 222 0 12 chr13 89568994 89569075 -12304094 - MER58B DNA MER1_type -251 90 11 366 302 79 14 chr13 89570448 89570587 -12302582 - MIR SINE MIR -52 210 63 3994 157 240 20 chr13 89570816 89571860 -12301309 - MER52C LTR ERV1 0 1278 5 3800 158 13 25 chr13 89572193 89572898 -12300271 + L1MB3 LINE L1 5444 6141 -42 2102 133 0 16 chr13 89572898 89573213 -12299956 + AluSx SINE Alu 1 310 -2 3800 158 13 25 chr13 89573213 89573254 -12299915 + L1MB3 LINE L1 6141 6181 -2 399 106 0 0 chr13 89573264 89573330 -12299839 + L1MB8 LINE L1 6110 6175 -3 1737 179 0 4 chr13 89574489 89574769 -12298400 + AluSx SINE Alu 1 279 -33 270 0 0 0 chr13 89574769 89574799 -12298370 + (CTA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr13 89574799 89574825 -12298344 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2607 146 42 8 chr13 89576291 89576786 -12296383 + L1MB4 LINE L1 5669 6180 0 519 301 58 63 chr13 89576820 89577223 -12295946 + L1MEd LINE L1 939 1428 -1062 2077 144 24 24 chr13 89577223 89577598 -12295571 - THE1C LTR MaLR 0 375 1 519 301 58 63 chr13 89577598 89577613 -12295556 + L1MEd LINE L1 1428 1442 -1048 2261 202 64 100 chr13 89577766 89578578 -12294591 - L1MA10 LINE L1 -10 6324 5542 231 245 65 50 chr13 89578578 89578717 -12294452 - MLT1L LTR MaLR -356 259 119 511 273 106 40 chr13 89579058 89579662 -12293507 - L1M4 LINE L1 -3051 3095 2452 729 195 11 11 chr13 89580007 89580283 -12292886 + MER33 DNA MER1_type 1 276 -87 2116 131 3 0 chr13 89581448 89581753 -12291416 + AluSq SINE Alu 1 306 -7 44 35 0 0 chr13 89582130 89582188 -12290981 + AT_rich Low_complexity Low_complexity 1 58 0 273 286 136 29 chr13 89582360 89582500 -12290669 - MIR SINE MIR -50 212 58 1448 231 26 3 chr13 89582813 89583199 -12289970 + L1M4 LINE L1 4339 4733 -1413 690 195 130 5 chr13 89583206 89583391 -12289778 + L1M4 LINE L1 5089 5296 -850 1285 250 149 48 chr13 89583393 89583909 -12289260 + MLT1E LTR MaLR 26 593 0 1434 255 80 36 chr13 89583914 89585073 -12288096 + L1ME3A LINE L1 4593 5803 -367 2150 129 0 0 chr13 89585094 89585389 -12287780 + AluSx SINE Alu 1 295 -17 2120 156 45 30 chr13 89585526 89586070 -12287099 + MLT2A2 LTR ERVL 1 554 0 243 279 39 48 chr13 89586071 89586175 -12286994 + L1ME3A LINE L1 6060 6162 -8 21 36 0 0 chr13 89588560 89588588 -12284581 + AT_rich Low_complexity Low_complexity 1 28 0 288 278 52 31 chr13 89588609 89588706 -12284463 - L2 LINE L2 -27 3286 3188 1788 139 78 33 chr13 89588789 89589148 -12284021 + THE1C LTR MaLR 1 375 0 1208 238 25 29 chr13 89589353 89589741 -12283428 - MLT2C1 LTR ERVL -8 456 1 211 301 12 72 chr13 89590238 89590321 -12282848 + L2 LINE L2 3102 3179 -93 1612 122 38 8 chr13 89590653 89590915 -12282254 + L1PB1 LINE L1 5882 6151 0 303 94 75 0 chr13 89591303 89591356 -12281813 - L1ME4a LINE L1 0 6121 6065 290 230 11 35 chr13 89592297 89592384 -12280785 - MLT1E2 LTR MaLR -541 85 1 410 221 11 11 chr13 89592505 89592600 -12280569 - MIR SINE MIR -6 256 162 1727 208 6 8 chr13 89593055 89593421 -12279748 + MLT1A1 LTR MaLR 1 365 0 482 292 46 75 chr13 89593447 89593770 -12279399 - L1ME3 LINE L1 -211 5951 5620 1777 146 167 32 chr13 89593770 89594147 -12279022 - MSTA LTR MaLR 0 428 1 9563 137 18 26 chr13 89594147 89595737 -12277432 - MSTA-int LTR MaLR 0 1580 5 1452 129 291 12 chr13 89595744 89596077 -12277092 - MSTA LTR MaLR -2 426 1 482 292 46 75 chr13 89596077 89596140 -12277029 - L1ME3 LINE L1 -547 5615 5552 1581 224 0 3 chr13 89596140 89596430 -12276739 + AluJb SINE Alu 1 289 -23 482 292 46 75 chr13 89596430 89596683 -12276486 - L1ME3 LINE L1 -610 5552 5327 2629 194 32 2 chr13 89596774 89597275 -12275894 + L1MA3 LINE L1 13 528 -7037 * 7441 173 19 3 chr13 89597263 89599571 -12273598 + L1MA3 LINE L1 5376 7724 0 3716 172 39 19 chr13 89599703 89600493 -12272676 - L1MD2 LINE L1 -8 6351 5546 21 0 0 0 chr13 89600522 89600543 -12272626 + AT_rich Low_complexity Low_complexity 1 21 0 232 344 38 15 chr13 89600647 89600778 -12272391 - L1MEd LINE L1 -5424 695 562 235 256 37 12 chr13 89601400 89601482 -12271687 - L1MC/D LINE L1 -2000 5808 5725 337 318 53 78 chr13 89602498 89602664 -12270505 + MIR SINE MIR 20 180 -82 728 207 11 45 chr13 89602664 89602843 -12270326 + MER5B DNA MER1_type 2 174 -4 337 318 53 78 chr13 89602843 89602921 -12270248 + MIR SINE MIR 180 258 -4 2299 186 69 12 chr13 89604135 89604625 -12268544 - LTR53 LTR ERVL 0 519 2 219 397 0 0 chr13 89604727 89604790 -12268379 + L2 LINE L2 3139 3201 -71 23 54 0 0 chr13 89604800 89604837 -12268332 + AT_rich Low_complexity Low_complexity 1 37 0 397 308 49 32 chr13 89605671 89605856 -12267313 + MIR SINE MIR 35 222 -40 769 284 25 55 chr13 89606081 89606147 -12267022 + MIR SINE MIR 10 76 -186 1636 132 132 15 chr13 89606147 89606481 -12266688 + THE1C LTR MaLR 1 373 -2 769 284 25 55 chr13 89606481 89606673 -12266496 + MIR SINE MIR 76 262 0 2646 101 6 8 chr13 89606801 89607166 -12266003 + THE1B LTR MaLR 1 364 0 10577 95 17 68 chr13 89607166 89608832 -12264337 + THE1B-int LTR MaLR 1 1580 0 2627 118 0 0 chr13 89608832 89609196 -12263973 + THE1B LTR MaLR 1 364 0 440 331 45 84 chr13 89609319 89609990 -12263179 + L2 LINE L2 2614 3255 -17 811 281 56 73 chr13 89610423 89610943 -12262226 - MLT1J LTR MaLR 0 511 1 431 118 146 64 chr13 89611057 89611167 -12262002 + MLT1B LTR MaLR 1 119 -271 888 206 71 34 chr13 89611477 89611744 -12261425 + MLT1B LTR MaLR 114 390 0 358 279 165 60 chr13 89611864 89612215 -12260954 + LTR33A LTR ERVL 132 519 -4 552 321 114 31 chr13 89612468 89612826 -12260343 + L1M4 LINE L1 4795 5182 -964 714 177 13 0 chr13 89613127 89613285 -12259884 + L1MC3 LINE L1 6899 7058 -727 286 145 14 58 chr13 89613305 89613374 -12259795 + MLT1F1 LTR MaLR 37 102 -465 1316 201 17 10 chr13 89613374 89613662 -12259507 + L1MC3 LINE L1 7166 7455 -330 926 186 27 78 chr13 89613664 89613996 -12259173 + MLT2B1 LTR ERVL 1 346 -118 283 240 10 10 chr13 89614132 89614232 -12258937 + GA-rich Low_complexity Low_complexity 4 103 0 244 206 124 82 chr13 89615071 89615168 -12258001 - MIR SINE MIR -113 149 49 207 263 18 18 chr13 89615786 89615843 -12257326 + MIR3 SINE MIR 118 174 -34 212 186 17 0 chr13 89616703 89616762 -12256407 + (TA)n Simple_repeat Simple_repeat 2 61 0 223 239 30 45 chr13 89618222 89618289 -12254880 + MIR SINE MIR 180 245 -17 2241 118 0 0 chr13 89618514 89618811 -12254358 + AluSx SINE Alu 1 297 -15 27 29 0 0 chr13 89618811 89618845 -12254324 + AT_rich Low_complexity Low_complexity 1 34 0 440 91 0 0 chr13 89619708 89619774 -12253395 + Alu SINE Alu 242 307 -3 1866 105 0 12 chr13 89619834 89620092 -12253077 + AluSc SINE Alu 44 298 -11 227 295 188 43 chr13 89620256 89620463 -12252706 - L2 LINE L2 -181 3091 2855 276 359 35 21 chr13 89620611 89620756 -12252413 + MIR3 SINE MIR 34 180 -28 18283 51 0 5 chr13 89621315 89623693 -12249476 + L1PA3 LINE L1 7 2372 -3774 15597 29 1 0 chr13 89623797 89626417 -12246752 + L1PA3 LINE L1 3531 6152 -3 21 0 0 0 chr13 89626417 89626438 -12246731 + AT_rich Low_complexity Low_complexity 1 21 0 1370 188 9 36 chr13 89627350 89627686 -12245483 + L1MA10 LINE L1 6008 6334 0 300 196 157 78 chr13 89627811 89627913 -12245256 - L2 LINE L2 0 3272 3163 245 272 25 25 chr13 89628584 89628665 -12244504 - MIR SINE MIR -4 258 178 * 486 338 75 33 chr13 89628651 89628956 -12244213 + L2 LINE L2 2215 2532 -782 306 345 50 55 chr13 89629049 89629249 -12243920 + L2 LINE L2 2885 3083 -189 2010 105 0 0 chr13 89629719 89629976 -12243193 + AluSx SINE Alu 37 293 -19 225 357 83 13 chr13 89630399 89630556 -12242613 - MIR SINE MIR -3 259 92 616 291 82 10 chr13 89630697 89630893 -12242276 + MIR SINE MIR 23 232 -30 1976 110 0 90 chr13 89631216 89631321 -12241848 - L1PB3 LINE L1 -2 6152 6039 7494 90 6 22 chr13 89631321 89632410 -12240759 + MER11C LTR ERVK 1 1071 0 1976 110 0 90 chr13 89632410 89632660 -12240509 - L1PB3 LINE L1 -115 6039 5829 21 0 0 0 chr13 89632868 89632889 -12240280 + AT_rich Low_complexity Low_complexity 1 21 0 303 96 0 0 chr13 89632934 89632986 -12240183 + (A)n Simple_repeat Simple_repeat 1 52 0 2282 212 31 0 chr13 89633548 89634038 -12239131 - MLT1D LTR MaLR 0 505 1 255 329 0 12 chr13 89635310 89635392 -12237777 - MER5A DNA MER1_type -98 91 11 825 197 10 66 chr13 89635880 89636078 -12237091 + MER5A DNA MER1_type 2 188 -1 505 307 68 6 chr13 89636365 89636541 -12236628 - MIR SINE MIR -56 206 20 680 174 89 94 chr13 89636594 89636807 -12236362 - MER20 DNA MER1_type 0 219 8 979 209 16 0 chr13 89636824 89637006 -12236163 - MER5A DNA MER1_type -1 188 4 4103 138 13 10 chr13 89637265 89638518 -12234651 - L1MA8 LINE L1 -365 5926 4670 329 241 283 0 chr13 89638789 89638934 -12234235 + MER5A DNA MER1_type 4 189 0 1789 153 7 42 chr13 89639251 89639396 -12233773 + AluJo SINE Alu 1 131 -181 2557 37 0 13 chr13 89639396 89639696 -12233473 + AluY SINE Alu 1 296 -15 1789 153 7 42 chr13 89639696 89639858 -12233311 + AluJo SINE Alu 131 297 -15 532 217 14 7 chr13 89640025 89640168 -12233001 + L1PB1 LINE L1 6 149 -6714 593 113 0 0 chr13 89640168 89640248 -12232921 + AluSp/q SINE Alu 202 281 -32 324 0 0 0 chr13 89640251 89640287 -12232882 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 13577 190 26 8 chr13 89640288 89645116 -12228053 + L1PB1 LINE L1 1620 6565 -302 198 0 0 0 chr13 89646132 89646154 -12227015 + (A)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr13 89646326 89646346 -12226823 + (A)n Simple_repeat Simple_repeat 1 20 0 232 361 98 16 chr13 89646861 89646983 -12226186 - L2 LINE L2 -5 3267 3136 268 187 13 13 chr13 89648049 89648124 -12225045 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 361 241 141 31 chr13 89648728 89648919 -12224250 + MLT1L LTR MaLR 394 605 -10 496 320 91 30 chr13 89649308 89649434 -12223735 - MIR SINE MIR -14 248 131 2533 52 0 7 chr13 89649434 89649741 -12223428 + AluY SINE Alu 1 305 -6 496 320 91 30 chr13 89649741 89649845 -12223324 - MIR SINE MIR -131 131 4 21 0 0 0 chr13 89649863 89649884 -12223285 + AT_rich Low_complexity Low_complexity 1 21 0 1667 195 120 11 chr13 89649900 89650351 -12222818 - MLT1D LTR MaLR -5 500 1 472 246 18 0 chr13 89650831 89650945 -12222224 - L2 LINE L2 -498 2816 2701 1960 112 36 46 chr13 89651268 89651573 -12221596 + AluJb SINE Alu 1 302 -10 848 276 16 0 chr13 89652447 89652690 -12220479 + L1MC4a LINE L1 5523 5769 -2039 801 181 19 0 chr13 89652717 89652872 -12220297 + MER20 DNA MER1_type 62 219 0 344 244 55 37 chr13 89652883 89653047 -12220122 + L1MC4a LINE L1 5782 5948 -1860 438 134 10 21 chr13 89653047 89653144 -12220025 + GA-rich Low_complexity Low_complexity 1 96 0 217 375 62 27 chr13 89653377 89653489 -12219680 + L2 LINE L2 3153 3268 -4 775 153 0 0 chr13 89653492 89653610 -12219559 + FLAM_C SINE Alu 1 118 -25 201 39 0 0 chr13 89653610 89653636 -12219533 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 183 242 121 30 chr13 89653690 89653789 -12219380 - L2 LINE L2 -46 3267 3160 230 341 136 23 chr13 89655004 89655136 -12218033 + MIR SINE MIR 2 148 -114 506 130 48 7 chr13 89655186 89655455 -12217714 + (TA)n Simple_repeat Simple_repeat 1 280 0 1977 137 52 25 chr13 89655603 89655968 -12217201 + THE1C LTR MaLR 1 375 0 463 250 13 26 chr13 89656038 89656190 -12216979 + LTR33 LTR ERVL 371 520 -1 253 257 62 69 chr13 89656272 89656416 -12216753 - L2 LINE L2 -2871 443 301 277 200 0 0 chr13 89656496 89656551 -12216618 + MLT-int LTR MaLR 691 745 -990 1840 193 17 33 chr13 89656716 89656780 -12216389 + MLT1A2-int LTR MaLR 1319 1383 -352 2364 99 0 3 chr13 89656780 89657093 -12216076 + AluSx SINE Alu 1 312 0 1840 193 17 33 chr13 89657093 89657447 -12215722 + MLT1A2-int LTR MaLR 1383 1730 -5 1409 221 29 18 chr13 89657504 89657844 -12215325 + MLT1A2 LTR MaLR 31 374 0 313 348 35 43 chr13 89657846 89658076 -12215093 - L2 LINE L2 -3009 305 78 198 365 25 19 chr13 89658267 89658426 -12214743 - L2 LINE L2 -1618 1696 1537 341 93 19 0 chr13 89659795 89659849 -12213320 + (TG)n Simple_repeat Simple_repeat 1 55 0 391 293 37 37 chr13 89660098 89660262 -12212907 + MIR SINE MIR 5 168 -94 291 256 106 6 chr13 89660397 89660557 -12212612 + L1ME4a LINE L1 5713 5888 -233 1996 144 0 10 chr13 89660707 89661013 -12212156 + AluSx SINE Alu 2 304 -8 245 342 25 0 chr13 89661692 89661771 -12211398 - L2 LINE L2 -1 3271 3191 456 286 34 0 chr13 89661935 89662082 -12211087 + LTR67 LTR ERVL 36 187 -370 1140 192 59 7 chr13 89663240 89663547 -12209622 - MER33 DNA MER1_type 0 324 2 1864 179 41 61 chr13 89665172 89665650 -12207519 + L1MB8 LINE L1 5089 5575 -603 2360 108 3 0 chr13 89665650 89665956 -12207213 + AluSq SINE Alu 1 307 -6 1864 179 41 61 chr13 89665956 89666019 -12207150 + L1MB8 LINE L1 5575 5638 -540 894 54 15 8 chr13 89666019 89666149 -12207020 + (TAGA)n Simple_repeat Simple_repeat 1 131 0 1864 179 41 61 chr13 89666149 89666668 -12206501 + L1MB8 LINE L1 5638 6076 -102 1026 137 22 0 chr13 89667125 89667308 -12205861 - L1MA8 LINE L1 -2 6289 6103 291 191 0 0 chr13 89667793 89667856 -12205313 + (TG)n Simple_repeat Simple_repeat 1 63 0 289 389 37 71 chr13 89668091 89668443 -12204726 - L2 LINE L2 0 3272 2933 459 320 59 57 chr13 89668530 89668918 -12204251 - L2 LINE L2 -507 2807 2419 1393 181 26 19 chr13 89669416 89669681 -12203488 - AluJo SINE Alu -4 308 42 1006 65 7 22 chr13 89670595 89670734 -12202435 - L1PA8 LINE L1 -7 6165 6029 692 105 73 0 chr13 89670918 89671042 -12202127 - L1 LINE L1 -1756 4390 4258 492 180 0 3 chr13 89671413 89671506 -12201663 - L1M4 LINE L1 -870 5978 5886 1472 71 15 0 chr13 89671506 89671702 -12201467 + L1PA6 LINE L1 5954 6154 0 492 180 0 3 chr13 89671702 89671716 -12201453 - L1M4 LINE L1 -962 5886 5873 * 5653 182 10 7 chr13 89671709 89673041 -12200128 - L1P5 LINE L1 -692 5462 4126 4933 187 37 3 chr13 89673047 89674529 -12198640 - L1M4 LINE L1 -2818 4030 2498 2546 190 41 7 chr13 89674529 89675088 -12198081 - Charlie1 DNA MER1_type -308 2453 1876 395 260 48 0 chr13 89675116 89675220 -12197949 - Charlie1 DNA MER1_type -2651 110 2 328 300 195 5 chr13 89675965 89676175 -12196994 - L1ME4a LINE L1 -176 5945 5696 214 360 40 60 chr13 89676389 89676489 -12196680 + MER91A DNA MER1_type 32 129 -67 720 282 111 19 chr13 89677439 89677755 -12195414 - LTR33 LTR ERVL -176 345 1 2277 114 0 7 chr13 89680064 89680372 -12192797 + AluSx SINE Alu 1 306 -6 2368 95 0 0 chr13 89680694 89680989 -12192180 + AluSx SINE Alu 1 295 -17 2320 101 0 16 chr13 89683073 89683391 -12189778 - AluSq SINE Alu 0 313 1 305 295 47 47 chr13 89685307 89685456 -12187713 + MIR SINE MIR 41 189 -73 211 302 63 0 chr13 89685519 89685582 -12187587 + L2 LINE L2 3206 3272 0 5646 149 22 5 chr13 89685715 89687138 -12186031 - L1MA7 LINE L1 -5 6286 4722 1759 159 0 53 chr13 89687196 89687516 -12185653 - AluJo SINE Alu -9 303 1 249 208 0 0 chr13 89687607 89687655 -12185514 + MLT1L LTR MaLR 1 48 -567 381 256 91 102 chr13 89687803 89687978 -12185191 + MLT1J LTR MaLR 235 408 -103 2044 134 0 3 chr13 89687978 89688288 -12184881 - AluJb SINE Alu 0 309 1 381 256 91 102 chr13 89688288 89688385 -12184784 + MLT1J LTR MaLR 408 505 -6 1568 120 11 15 chr13 89688680 89688954 -12184215 - L1MA8 LINE L1 -1 6290 6018 2201 121 0 0 chr13 89689007 89689304 -12183865 - AluSx SINE Alu -15 297 1 338 297 62 16 chr13 89689623 89689751 -12183418 + MIR SINE MIR 27 160 -102 300 328 134 10 chr13 89689788 89689989 -12183180 + L1MC4a LINE L1 5320 5545 -2240 1557 180 6 57 chr13 89690496 89690812 -12182357 + AluJo SINE Alu 1 300 -12 23 42 0 21 chr13 89690914 89690941 -12182228 + AT_rich Low_complexity Low_complexity 1 28 -19 1700 147 31 14 chr13 89690941 89691234 -12181935 + AluJo SINE Alu 1 298 -14 23 42 0 21 chr13 89691234 89691254 -12181915 + AT_rich Low_complexity Low_complexity 28 47 0 1397 121 43 10 chr13 89691371 89691578 -12181591 - AluSg/x SINE Alu -30 279 66 915 249 25 45 chr13 89692560 89692805 -12180364 - MIR SINE MIR -10 252 13 244 313 24 0 chr13 89692818 89692901 -12180268 - L3 LINE CR1 -15 1562 1478 1061 178 50 54 chr13 89693450 89693692 -12179477 - MER82 DNA MER2_type -213 440 200 1657 139 53 23 chr13 89693790 89694091 -12179078 - THE1C LTR MaLR 0 375 66 460 37 0 0 chr13 89694262 89694316 -12178853 - THE1C LTR MaLR -374 54 1 670 239 0 21 chr13 89695195 89695337 -12177832 - MER82 DNA MER2_type -510 143 5 643 303 98 16 chr13 89695341 89695648 -12177521 + MLT1I LTR MaLR 70 401 -8 2187 279 106 9 chr13 89695651 89696407 -12176762 - L2 LINE L2 -685 2629 1801 427 246 8 8 chr13 89696423 89696545 -12176624 - LTR41 LTR ERVL -651 122 1 510 294 21 43 chr13 89696649 89696836 -12176333 - MER5A DNA MER1_type 0 189 7 33 25 0 0 chr13 89697025 89697065 -12176104 + AT_rich Low_complexity Low_complexity 1 40 0 1984 114 20 30 chr13 89697677 89697975 -12175194 - AluSx SINE Alu -17 295 1 251 384 9 18 chr13 89697998 89698110 -12175059 - MIR SINE MIR -81 127 17 435 227 89 58 chr13 89698919 89699144 -12174025 + L1MC4a LINE L1 5764 5995 -1813 981 175 153 101 chr13 89699643 89700049 -12173120 - MER66A LTR ERV1 0 478 97 1896 146 133 6 chr13 89700214 89700537 -12172632 + MLT1A1 LTR MaLR 1 364 -1 982 264 71 22 chr13 89700537 89700883 -12172286 + MLT1I LTR MaLR 43 409 0 2217 105 3 0 chr13 89701588 89701883 -12171286 - AluSg SINE Alu -14 296 1 576 303 106 13 chr13 89701883 89702307 -12170862 - L1MDa LINE L1 -4514 1868 1425 345 230 65 18 chr13 89702492 89702668 -12170501 - L1MDa LINE L1 -5186 1199 897 703 216 6 61 chr13 89702682 89702863 -12170306 + MER5B DNA MER1_type 2 172 -6 457 286 65 6 chr13 89703375 89703543 -12169626 + LTR67 LTR ERVL 2 179 -378 348 307 73 15 chr13 89703754 89704028 -12169141 - LTR16B LTR ERVL -109 355 66 21 0 0 0 chr13 89704065 89704086 -12169083 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr13 89704347 89704379 -12168790 + AT_rich Low_complexity Low_complexity 1 32 0 712 242 117 44 chr13 89704618 89704891 -12168278 + Charlie2 DNA MER1_type 69 361 -2501 1099 234 140 18 chr13 89705344 89705799 -12167370 + Charlie2 DNA MER1_type 2237 2770 -92 2335 78 0 20 chr13 89705799 89706105 -12167064 + AluSp SINE Alu 1 300 -13 1099 234 140 18 chr13 89706105 89706193 -12166976 + Charlie2 DNA MER1_type 2770 2846 -16 2231 123 0 0 chr13 89706204 89706514 -12166655 + AluSx SINE Alu 1 310 -2 217 310 149 0 chr13 89706673 89706760 -12166409 + MIR3 SINE MIR 58 157 -51 203 387 27 0 chr13 89706980 89707091 -12166078 + L3 LINE CR1 76 189 -1388 1441 173 133 70 chr13 89707094 89707569 -12165600 + Charlie4a DNA MER1_type 1 505 -3 37 23 0 0 chr13 89708720 89708764 -12164405 + GC_rich Low_complexity Low_complexity 1 44 0 1398 159 39 0 chr13 89710464 89710696 -12162473 - L1PA16 LINE L1 -9 6157 5917 185 306 82 24 chr13 89711419 89711504 -12161665 + L2 LINE L2 2616 2705 -609 21 0 0 0 chr13 89711572 89711593 -12161576 + AT_rich Low_complexity Low_complexity 1 21 0 1216 171 4 44 chr13 89712395 89712623 -12160546 - AluJo SINE Alu -12 300 82 237 128 0 0 chr13 89714406 89714453 -12158716 + (T)n Simple_repeat Simple_repeat 1 47 0 673 305 111 29 chr13 89714699 89715142 -12158027 - L2 LINE L2 -4 3309 2831 385 152 239 0 chr13 89715252 89715344 -12157825 - MER46A DNA MER2_type -122 114 1 564 314 92 19 chr13 89715357 89715682 -12157487 - L2 LINE L2 -654 2660 2312 611 260 24 107 chr13 89715721 89716094 -12157075 + L2 LINE L2 2968 3309 -4 761 247 79 45 chr13 89716520 89716961 -12156208 - MLT1E LTR MaLR -1 592 64 2210 106 0 31 chr13 89717214 89717534 -12155635 - AluSg SINE Alu 0 310 1 1026 216 114 20 chr13 89717795 89718277 -12154892 - MLT1E1 LTR MaLR -2 652 67 1352 227 6 61 chr13 89718355 89718716 -12154453 + MLT1A2 LTR MaLR 1 341 -33 875 167 148 29 chr13 89718717 89718927 -12154242 - MER46A DNA MER2_type 0 236 2 1990 148 0 14 chr13 89719113 89719403 -12153766 - AluSx SINE Alu -26 286 1 302 265 126 47 chr13 89719654 89719869 -12153300 - HAL1 LINE L1 -32 2475 2244 * 901 238 90 107 chr13 89719867 89720580 -12152589 - HAL1 LINE L1 -1181 1326 626 1730 156 141 46 chr13 89720683 89720905 -12152264 - MSTA LTR MaLR 0 428 228 2460 86 3 0 chr13 89720905 89721209 -12151960 - AluSq SINE Alu -8 305 1 1730 156 141 46 chr13 89721209 89721377 -12151792 - MSTA LTR MaLR -200 228 1 321 26 0 0 chr13 89721723 89721761 -12151408 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 2077 110 0 4 chr13 89721761 89722042 -12151127 - AluSx SINE Alu -32 280 1 404 279 84 86 chr13 89722288 89722836 -12150333 - L1ME3A LINE L1 -5 6165 5564 1816 128 60 0 chr13 89722906 89723187 -12149982 + AluSx SINE Alu 1 298 -14 301 289 78 28 chr13 89723208 89723388 -12149781 - L1ME3A LINE L1 -1052 5094 4906 284 276 70 39 chr13 89723431 89723587 -12149582 - HAL1 LINE L1 -2346 161 1 22 0 0 0 chr13 89723624 89723646 -12149523 + AT_rich Low_complexity Low_complexity 1 22 0 197 328 0 18 chr13 89725073 89725135 -12148034 - MIR SINE MIR -127 81 20 854 163 25 51 chr13 89726268 89726464 -12146705 + MER3 DNA MER1_type 8 198 -11 1527 134 82 0 chr13 89726723 89726954 -12146215 - AluJb SINE Alu -54 258 9 2273 106 0 0 chr13 89727468 89727769 -12145400 - AluSx SINE Alu -11 301 1 452 215 37 67 chr13 89728276 89728411 -12144758 - L1ME3A LINE L1 -137 6033 5903 2262 89 13 22 chr13 89728413 89728726 -12144443 - AluSg SINE Alu 0 310 1 193 349 48 40 chr13 89728901 89729027 -12144142 - MER5B DNA MER1_type -30 148 22 263 299 47 0 chr13 89729106 89729191 -12143978 - MIR SINE MIR -102 106 24 583 294 102 0 chr13 89729254 89729451 -12143718 - MER58A DNA MER1_type -7 217 1 195 193 175 0 chr13 89730633 89730690 -12142479 + MIR SINE MIR 123 189 -73 2313 93 3 0 chr13 89734793 89735083 -12138086 + AluSp SINE Alu 1 291 -22 923 176 67 36 chr13 89735286 89735559 -12137610 + MER2 DNA MER2_type 1 345 0 1496 237 136 49 chr13 89735862 89736358 -12136811 - L1ME2 LINE L1 -9 6155 5704 2487 87 0 3 chr13 89736358 89736669 -12136500 - AluSg SINE Alu 0 310 1 2672 37 0 0 chr13 89736676 89736975 -12136194 - AluY SINE Alu -12 299 1 1496 237 136 49 chr13 89736975 89737123 -12136046 - L1ME2 LINE L1 -465 5699 5446 1105 254 137 32 chr13 89737485 89737680 -12135489 - L1ME3A LINE L1 -20 6150 5977 348 221 13 0 chr13 89737680 89737757 -12135412 - MER116 DNA Mariner 0 80 3 1105 254 137 32 chr13 89737757 89738394 -12134775 - L1ME3A LINE L1 -193 5977 5197 42 20 0 0 chr13 89738809 89738858 -12134311 + AT_rich Low_complexity Low_complexity 1 49 0 250 234 0 31 chr13 89740852 89740916 -12132253 - L1ME3A LINE L1 -296 5825 5764 270 377 82 29 chr13 89742519 89742726 -12130443 - L2 LINE L2 -229 3043 2826 1217 124 0 28 chr13 89743484 89743662 -12129507 + AluSq SINE Alu 1 173 -140 2254 105 10 0 chr13 89743761 89744057 -12129112 - AluSg SINE Alu -11 299 1 270 285 62 31 chr13 89744206 89744336 -12128833 - HAL1b LINE L1 -17 1331 1198 259 289 24 0 chr13 89744342 89744425 -12128744 - L1ME4a LINE L1 -203 5918 5834 972 185 54 19 chr13 89744826 89745085 -12128084 + MER33 DNA MER1_type 56 323 -1 304 280 41 103 chr13 89745776 89746047 -12127122 - L2 LINE L2 -5 3308 3055 506 254 46 29 chr13 89746585 89746758 -12126411 - MER5B DNA MER1_type 0 178 3 207 0 0 0 chr13 89749058 89749081 -12124088 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1723 174 3 3 chr13 89749085 89749367 -12123802 - AluJo SINE Alu -30 282 1 196 343 45 35 chr13 89750043 89750244 -12122925 + L2 LINE L2 1860 2062 -1252 200 298 106 11 chr13 89750310 89750404 -12122765 + L2 LINE L2 2703 2805 -509 246 330 200 14 chr13 89750999 89751214 -12121955 + L2 LINE L2 3005 3259 -13 26 50 0 0 chr13 89751743 89751783 -12121386 + AT_rich Low_complexity Low_complexity 1 40 0 2388 84 0 3 chr13 89752158 89752466 -12120703 - AluSc SINE Alu -2 307 1 248 277 59 20 chr13 89752853 89752954 -12120215 - MIR SINE MIR -2 260 156 181 317 106 0 chr13 89753352 89753456 -12119713 - L2 LINE L2 0 3313 3199 324 271 60 23 chr13 89753507 89753640 -12119529 + MIR SINE MIR 2 139 -123 24 32 0 0 chr13 89753937 89753968 -12119201 + AT_rich Low_complexity Low_complexity 1 31 0 232 293 0 0 chr13 89759294 89759352 -12113817 - L2 LINE L2 -6 3307 3250 984 181 0 0 chr13 89759746 89759912 -12113257 + FAM SINE Alu 2 167 -8 234 0 0 0 chr13 89759941 89759967 -12113202 + (TG)n Simple_repeat Simple_repeat 2 27 0 267 293 121 26 chr13 89760129 89760245 -12112924 + MIR SINE MIR 20 146 -116 190 297 31 0 chr13 89760240 89760304 -12112865 + L2 LINE L2 3215 3280 -33 * 1908 146 0 14 chr13 89763596 89763890 -12109279 + AluJb SINE Alu 1 290 -22 198 103 0 0 chr13 89763890 89763919 -12109250 + (CATA)n Simple_repeat Simple_repeat 4 32 0 1607 190 10 19 chr13 89764852 89765163 -12108006 - AluJo SINE Alu -4 308 1 21 0 0 0 chr13 89765602 89765623 -12107546 + AT_rich Low_complexity Low_complexity 1 21 0 426 314 81 43 chr13 89767075 89767447 -12105722 + L2 LINE L2 1736 2121 -1193 314 298 85 62 chr13 89767447 89767742 -12105427 + L2 LINE L2 2503 2774 -540 186 316 28 57 chr13 89767851 89768028 -12105141 + L2 LINE L2 2974 3145 -168 42 65 0 0 chr13 89768817 89768894 -12104275 + AT_rich Low_complexity Low_complexity 1 77 0 280 271 105 0 chr13 89769086 89769219 -12103950 - L1ME LINE L1 -293 5828 5682 239 294 0 0 chr13 89769270 89769338 -12103831 - L1ME LINE L1 -528 5593 5526 1186 272 86 36 chr13 89769949 89770653 -12102516 + L1MB8 LINE L1 12 810 -6049 * 1963 267 63 50 chr13 89770635 89771826 -12101343 + L1MB8 LINE L1 1747 2953 -4006 3960 202 50 27 chr13 89771838 89772716 -12100453 + L1MB8 LINE L1 5174 6030 -959 1914 141 27 10 chr13 89772716 89773014 -12100155 - AluJo SINE Alu -9 303 1 3960 202 50 27 chr13 89773014 89773875 -12099294 + L1MB8 LINE L1 6030 6954 -35 365 302 136 60 chr13 89774314 89774586 -12098583 - L1ME LINE L1 -1603 4543 4223 2222 89 0 0 chr13 89774586 89774920 -12098249 - AluSc SINE Alu 0 334 1 365 302 136 60 chr13 89774920 89775080 -12098089 - L1ME LINE L1 -1923 4223 4077 650 292 29 33 chr13 89777525 89777765 -12095404 - MIR SINE MIR -4 258 20 235 245 122 10 chr13 89777929 89778027 -12095142 + L2 LINE L2 1866 1974 -1340 225 0 0 0 chr13 89778242 89778267 -12094902 + (T)n Simple_repeat Simple_repeat 1 25 0 197 350 120 10 chr13 89778835 89778935 -12094234 - L2 LINE L2 -21 3292 3182 1896 171 78 103 chr13 89779299 89779821 -12093348 - LTR22 LTR ERVK 0 509 1 21565 98 13 8 chr13 89779821 89783002 -12090167 - HERVK22 LTR ERVK 0 6837 2314 2120 124 0 0 chr13 89783000 89783307 -12089862 - HERVK22 LTR ERVK -6060 777 471 * 2127 64 50 0 chr13 89783290 89783573 -12089596 - HERVK22 LTR ERVK -6540 297 1 2003 191 93 13 chr13 89783573 89784044 -12089125 - LTR22 LTR ERVK 0 509 1 383 237 65 0 chr13 89784984 89785077 -12088092 - L2 LINE L2 -5 3308 3210 802 266 31 13 chr13 89785086 89785312 -12087857 + MIR SINE MIR 2 231 -31 380 299 55 8 chr13 89786794 89786921 -12086248 + MIR SINE MIR 2 134 -128 249 299 103 31 chr13 89786995 89787092 -12086077 - L2 LINE L2 -14 3258 3155 208 279 0 47 chr13 89787402 89787488 -12085681 + T-rich Low_complexity Low_complexity 5 86 0 520 320 166 7 chr13 89788819 89789350 -12083819 + L2 LINE L2 2623 3257 -56 26 0 0 0 chr13 89790342 89790368 -12082801 + AT_rich Low_complexity Low_complexity 1 26 0 211 239 11 163 chr13 89790975 89791067 -12082102 - MIR SINE MIR -86 122 45 492 240 0 0 chr13 89791095 89791191 -12081978 + MER58A DNA MER1_type 1 96 -11 585 227 236 32 chr13 89792794 89793200 -12079969 + L1MC5 LINE L1 7347 7835 -126 231 245 0 0 chr13 89793220 89793273 -12079896 - L1MA10 LINE L1 -16 6318 6266 311 250 0 0 chr13 89793535 89793607 -12079562 - L1MB8 LINE L1 0 6178 6107 2544 227 85 28 chr13 89793614 89794430 -12078739 - L1ME1 LINE L1 -89 6077 5209 564 192 71 0 chr13 89794431 89794530 -12078639 - FLAM_A SINE Alu -36 106 1 1629 204 84 24 chr13 89794545 89794785 -12078384 - L1ME1 LINE L1 -965 5181 4904 216 0 0 0 chr13 89794785 89794809 -12078360 + (TG)n Simple_repeat Simple_repeat 2 25 0 1629 204 84 24 chr13 89794809 89794985 -12078184 - L1ME1 LINE L1 -1242 4904 4740 192 97 0 0 chr13 89795270 89795301 -12077868 + (TA)n Simple_repeat Simple_repeat 2 32 0 2301 54 14 17 chr13 89795689 89795983 -12077186 - AluY SINE Alu -14 297 5 930 296 73 2 chr13 89796010 89796449 -12076720 - L1ME1 LINE L1 -1429 4717 4248 360 221 105 21 chr13 89796461 89796556 -12076613 + MER58 DNA MER1_type 1 103 -238 186 43 0 0 chr13 89796556 89796579 -12076590 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 252 0 0 0 chr13 89796581 89796609 -12076560 + (TA)n Simple_repeat Simple_repeat 2 29 0 438 168 50 10 chr13 89797798 89797899 -12075270 - MER20 DNA MER1_type -33 186 82 262 322 122 19 chr13 89797912 89798117 -12075052 + MIR SINE MIR 16 241 -21 522 200 168 19 chr13 89798851 89799006 -12074163 - MER5A DNA MER1_type -3 186 9 913 97 7 83 chr13 89800316 89800460 -12072709 - FLAM_C SINE Alu 0 133 1 186 274 16 0 chr13 89800746 89800808 -12072361 + MER5A DNA MER1_type 1 63 -126 2483 86 0 0 chr13 89801370 89801671 -12071498 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr13 89801802 89801823 -12071346 + AT_rich Low_complexity Low_complexity 1 21 0 2421 90 0 0 chr13 89802580 89802879 -12070290 - AluSg SINE Alu -11 299 1 657 207 129 13 chr13 89803580 89803812 -12069357 + MER5C DNA MER1_type 21 279 -45 1337 229 89 42 chr13 89804213 89804619 -12068550 + MER63B DNA MER1_type 12 436 0 354 294 117 28 chr13 89806262 89806476 -12066693 + MIR SINE MIR 5 237 -25 530 265 33 28 chr13 89806551 89806732 -12066437 - MIR SINE MIR -34 228 47 181 342 0 26 chr13 89807517 89807593 -12065576 + MIR SINE MIR 135 208 -54 339 25 0 0 chr13 89808186 89808226 -12064943 + (TC)n Simple_repeat Simple_repeat 1 40 0 231 36 0 0 chr13 89808225 89808253 -12064916 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 2894 48 0 3 chr13 89809509 89809846 -12063323 + L1PA7 LINE L1 5819 6154 0 459 250 101 0 chr13 89810263 89810411 -12062758 + L3 LINE CR1 1234 1396 -181 966 179 52 28 chr13 89810587 89810799 -12062370 + MER20 DNA MER1_type 3 219 0 180 333 0 27 chr13 89810859 89810934 -12062235 + MIR SINE MIR 75 147 -115 560 307 34 19 chr13 89811013 89811280 -12061889 - LTR16C LTR ERVL -3 488 218 3799 134 38 2 chr13 89811585 89812167 -12061002 + LTR26 LTR ERV1 1 603 0 276 154 0 0 chr13 89814926 89814978 -12058191 + (TG)n Simple_repeat Simple_repeat 1 52 0 671 244 43 129 chr13 89815072 89815202 -12057967 + L1M4 LINE L1 3852 3992 -2154 1963 148 7 0 chr13 89815202 89815493 -12057676 + AluSx SINE Alu 1 293 -19 192 77 0 0 chr13 89815502 89815528 -12057641 + (TA)n Simple_repeat Simple_repeat 1 26 0 671 244 43 129 chr13 89815528 89815908 -12057261 + L1M4 LINE L1 4000 4312 -1834 2324 93 0 10 chr13 89815908 89816209 -12056960 - AluSq SINE Alu -15 298 1 671 244 43 129 chr13 89816209 89816314 -12056855 + L1M4 LINE L1 4312 4424 -1722 223 157 20 39 chr13 89816539 89816590 -12056579 + CT-rich Low_complexity Low_complexity 5 54 0 2264 175 44 25 chr13 89816890 89817012 -12056157 - MER31A LTR ERV1 0 485 367 3745 128 74 7 chr13 89817012 89817607 -12055562 + LTR24C LTR ERV1 1 635 0 2264 175 44 25 chr13 89817607 89817959 -12055210 - MER31A LTR ERV1 -118 367 2 729 238 6 43 chr13 89818133 89818297 -12054872 - FRAM SINE Alu -8 158 1 296 48 24 0 chr13 89818427 89818469 -12054700 + (TG)n Simple_repeat Simple_repeat 2 44 0 2546 138 16 62 chr13 89818676 89819153 -12054016 + L1MC1 LINE L1 5106 5550 -783 2373 86 7 3 chr13 89819153 89819457 -12053712 - AluSq SINE Alu -8 305 1 2546 138 16 62 chr13 89819457 89819615 -12053554 + L1MC1 LINE L1 5550 5714 -619 3259 74 21 11 chr13 89819621 89820055 -12053114 - L1PA8 LINE L1 -5 6167 5730 3585 146 50 5 chr13 89820055 89820657 -12052512 + L1MC1 LINE L1 5703 6331 -2 271 300 215 31 chr13 89821692 89821822 -12051347 + L2 LINE L2 3119 3272 0 1740 242 149 38 chr13 89822164 89822855 -12050314 + LTR41 LTR ERVL 1 768 -5 493 231 54 23 chr13 89822925 89823055 -12050114 + HERVL40 LTR ERVL 1477 1610 -3920 * 3759 271 86 9 chr13 89823045 89824429 -12048740 + HERVL40 LTR ERVL 2511 4054 -1476 260 257 105 92 chr13 89824458 89824645 -12048524 + L1M4 LINE L1 4468 4651 -1495 2031 151 0 0 chr13 89824645 89824937 -12048232 + AluSx SINE Alu 1 292 -20 260 257 105 92 chr13 89824937 89825388 -12047781 + L1M4 LINE L1 4651 5095 -1051 1693 188 3 3 chr13 89825388 89825675 -12047494 + AluJo SINE Alu 1 287 -25 260 257 105 92 chr13 89825675 89825737 -12047432 + L1M4 LINE L1 5095 5155 -991 2140 121 0 0 chr13 89825737 89826026 -12047143 + AluSx SINE Alu 1 289 -23 260 257 105 92 chr13 89826026 89826101 -12047068 + L1M4 LINE L1 5155 5255 -891 338 68 0 0 chr13 89826110 89826154 -12047015 - MSTA LTR MaLR -384 44 1 1931 49 0 0 chr13 89826183 89826406 -12046763 + AluY SINE Alu 76 298 -13 305 308 196 29 chr13 89826542 89826725 -12046444 + L1MC4a LINE L1 5962 6196 -1612 2365 82 0 0 chr13 89826725 89827019 -12046150 + AluY SINE Alu 1 294 -17 305 308 196 29 chr13 89827019 89827075 -12046094 + L1MC4a LINE L1 6196 6241 -1567 307 337 36 56 chr13 89827082 89827331 -12045838 + L1MC4a LINE L1 6279 6522 -1286 514 258 144 101 chr13 89827335 89828106 -12045063 + L1MC5 LINE L1 6878 7674 -368 1213 132 0 0 chr13 89828119 89828286 -12044883 - AluSp SINE Alu -9 304 138 348 230 122 67 chr13 89828377 89828647 -12044522 + L1MC5 LINE L1 7644 7928 -33 272 247 43 43 chr13 89828806 89828899 -12044270 + L1M4c LINE L1 1551 1643 -4741 294 254 0 0 chr13 89829058 89829125 -12044044 + L1ME3A LINE L1 6095 6161 -9 419 350 73 28 chr13 89829260 89829765 -12043404 + HAL1 LINE L1 1177 1704 -803 1954 198 16 14 chr13 89830004 89830368 -12042801 + MLT1A1 LTR MaLR 1 365 0 270 0 0 0 chr13 89830812 89830842 -12042327 + (TG)n Simple_repeat Simple_repeat 1 30 0 851 239 60 51 chr13 89830860 89831191 -12041978 + MER115 DNA AcHobo 355 688 -5 421 288 129 6 chr13 89831727 89831890 -12041279 + MIR SINE MIR 29 211 -51 1779 180 3 0 chr13 89831901 89832185 -12040984 + AluJo SINE Alu 15 299 -13 1891 134 14 0 chr13 89832609 89832885 -12040284 + AluJb SINE Alu 1 280 -32 345 75 0 0 chr13 89833244 89833297 -12039872 + (CA)n Simple_repeat Simple_repeat 2 54 0 614 183 0 0 chr13 89834092 89834196 -12038973 + U13 snRNA snRNA 1 104 0 860 273 44 22 chr13 89835035 89835306 -12037863 - L1MDa LINE L1 -6225 315 39 3074 241 158 33 chr13 89835333 89836129 -12037040 - L2 LINE L2 -863 2451 1756 1735 167 86 37 chr13 89836129 89836477 -12036692 + MLT1A1 LTR MaLR 1 365 0 3074 241 158 33 chr13 89836477 89836703 -12036466 - L2 LINE L2 -1558 1756 1560 1946 136 0 62 chr13 89836703 89837026 -12036143 + AluSx SINE Alu 1 303 -9 3074 241 158 33 chr13 89837026 89837126 -12036043 - L2 LINE L2 -1754 1560 1188 1679 199 92 55 chr13 89837314 89837580 -12035589 + MER119 DNA MER1_type 78 333 -250 2309 106 0 0 chr13 89837580 89837882 -12035287 + AluSc SINE Alu 6 307 -2 1679 199 92 55 chr13 89837882 89837964 -12035205 + MER119 DNA MER1_type 333 411 -172 2265 111 0 13 chr13 89837964 89838280 -12034889 + AluSx SINE Alu 1 312 0 1679 199 92 55 chr13 89838280 89838418 -12034751 + MER119 DNA MER1_type 411 583 0 5724 130 24 17 chr13 89839037 89840021 -12033148 + L1PA16 LINE L1 5171 6163 -3 2022 142 0 0 chr13 89840032 89840345 -12032824 + AluSc SINE Alu 1 313 0 522 141 222 10 chr13 89840363 89840462 -12032707 + FLAM_C SINE Alu 3 122 -11 758 170 0 0 chr13 89840470 89840605 -12032564 + L1MA3 LINE L1 6170 6304 -1 2594 285 56 8 chr13 89840729 89841559 -12031610 + MER69 DNA AcHobo 1 942 -1584 249 215 101 0 chr13 89841560 89841639 -12031530 + MER69 DNA AcHobo 2124 2210 -316 190 267 93 12 chr13 89845903 89845989 -12027180 - L3 LINE CR1 -1339 238 146 196 349 60 12 chr13 89846120 89846203 -12026966 + L2 LINE L2 2922 3008 -264 235 382 0 0 chr13 89849724 89849860 -12023309 + CT-rich Low_complexity Low_complexity 6 141 0 239 389 0 6 chr13 89850211 89850386 -12022783 + CT-rich Low_complexity Low_complexity 6 179 0 777 250 0 34 chr13 89863254 89863286 -12009883 + MER5A DNA MER1_type 20 52 -137 1292 189 123 64 chr13 89863286 89863634 -12009535 + MLT2D LTR ERVL 1 376 -38 423 0 0 0 chr13 89863634 89863681 -12009488 + (CA)n Simple_repeat Simple_repeat 2 48 0 1292 189 123 64 chr13 89863681 89863723 -12009446 + MLT2D LTR ERVL 376 414 0 777 250 0 34 chr13 89863723 89863866 -12009303 + MER5A DNA MER1_type 52 189 0 4196 148 27 10 chr13 89864092 89864802 -12008367 + MER72 LTR ERV1 1 722 0 782 163 7 0 chr13 89864980 89865121 -12008048 + MLT1B LTR MaLR 3 144 -246 998 119 75 170 chr13 89865202 89865305 -12007864 + MLT1B LTR MaLR 125 236 -154 3739 61 0 10 chr13 89865305 89865798 -12007371 + L1PA8 LINE L1 5685 6172 0 998 119 75 170 chr13 89865798 89865988 -12007181 + MLT1B LTR MaLR 236 390 0 269 167 83 0 chr13 89866128 89866188 -12006981 + MLT1L LTR MaLR 144 208 -407 2052 127 20 0 chr13 89866220 89866519 -12006650 + AluSx SINE Alu 1 305 -7 437 229 157 20 chr13 89866626 89866779 -12006390 + L2 LINE L2 3134 3307 -6 2903 76 2 0 chr13 89867657 89868053 -12005116 + L1PA8A LINE L1 5708 6104 -27 26 30 0 0 chr13 89868071 89868104 -12005065 + AT_rich Low_complexity Low_complexity 1 33 0 375 221 0 0 chr13 89868167 89868253 -12004916 + (TA)n Simple_repeat Simple_repeat 1 86 0 2016 109 35 0 chr13 89868253 89868536 -12004633 - AluSx SINE Alu -12 300 8 321 340 28 21 chr13 89868536 89868677 -12004492 - MIR SINE MIR -57 205 64 302 118 20 0 chr13 89868682 89868733 -12004436 + Alu SINE Alu 1 52 -248 2289 112 0 3 chr13 89868884 89869197 -12003972 + AluSq SINE Alu 1 312 -1 378 341 93 58 chr13 89869855 89870404 -12002765 + L2 LINE L2 2677 3268 -4 232 214 0 71 chr13 89870535 89870591 -12002578 + L2 LINE L2 3250 3301 -12 322 259 200 15 chr13 89870641 89870776 -12002393 + MIR SINE MIR 95 254 -8 344 178 9 47 chr13 89871913 89872020 -12001149 - MER53 DNA DNA 0 189 87 1829 169 0 22 chr13 89872623 89872942 -12000227 + AluJo SINE Alu 1 312 0 2212 106 0 7 chr13 89873279 89873581 -11999588 + AluSq SINE Alu 1 300 -13 1702 127 12 105 chr13 89874919 89875243 -11997926 + AluJo SINE Alu 1 294 -18 1793 112 108 0 chr13 89875246 89875524 -11997645 + AluSx SINE Alu 1 308 -4 901 178 32 50 chr13 89875631 89875811 -11997358 - MER20 DNA MER1_type -3 216 39 1724 133 70 51 chr13 89875811 89876142 -11997027 + MER1B DNA MER1_type 1 337 0 901 178 32 50 chr13 89876142 89876180 -11996989 - MER20 DNA MER1_type -180 39 2 2096 122 55 10 chr13 89876198 89876731 -11996438 + MER51A LTR ERV1 1 625 -9 1454 144 3 161 chr13 89877953 89878294 -11994875 - AluSx SINE Alu -25 287 1 2196 120 0 0 chr13 89880125 89880416 -11992753 + AluSx SINE Alu 1 291 -21 1317 118 90 5 chr13 89881190 89881402 -11991767 + MER30 DNA MER1_type 1 230 0 1058 202 99 9 chr13 89882178 89882401 -11990768 - MIR SINE MIR -18 244 2 304 302 39 47 chr13 89883026 89883252 -11989917 + MLT1I LTR MaLR 94 288 -121 278 253 60 0 chr13 89883634 89883717 -11989452 - L1MC/D LINE L1 -2129 5679 5592 693 252 102 92 chr13 89884061 89884442 -11988727 - HAL1 LINE L1 -1866 641 257 311 291 52 22 chr13 89884484 89884618 -11988551 - HAL1 LINE L1 -2357 150 13 1628 134 3 33 chr13 89884637 89884942 -11988227 - AluJo SINE Alu -16 296 1 2046 82 39 0 chr13 89885076 89885358 -11987811 - AluSx SINE Alu -19 293 1 386 291 222 47 chr13 89885923 89886504 -11986665 + L1M2 LINE L1 512 1194 -5655 402 218 27 0 chr13 89887408 89887518 -11985651 - L1MB8 LINE L1 -27 6151 6039 992 193 18 5 chr13 89887649 89887867 -11985302 + MER41B LTR ERV1 176 396 -239 273 146 0 0 chr13 89887972 89888020 -11985149 + (TA)n Simple_repeat Simple_repeat 2 49 0 421 198 24 148 chr13 89888020 89888214 -11984955 + MER66A LTR ERV1 302 465 -13 1295 191 31 22 chr13 89888217 89888536 -11984633 - L1MB7 LINE L1 -163 6021 5700 1322 176 16 32 chr13 89888540 89888853 -11984316 + MLT1D LTR MaLR 198 505 0 532 264 48 0 chr13 89888853 89889020 -11984149 - MER58 DNA MER1_type -2235 185 11 417 327 30 71 chr13 89889020 89889359 -11983810 + L1ME LINE L1 3729 4053 -2093 379 227 53 0 chr13 89889505 89889580 -11983589 + L2 LINE L2 3190 3268 -4 1664 217 17 38 chr13 89889587 89889966 -11983203 + MLT2D LTR ERVL 1 372 -42 255 31 0 0 chr13 89889966 89889998 -11983171 + (CA)n Simple_repeat Simple_repeat 2 33 0 1664 217 17 38 chr13 89889998 89890038 -11983131 + MLT2D LTR ERVL 372 411 -3 338 280 32 8 chr13 89890044 89890169 -11983000 + L1ME LINE L1 4063 4190 -1956 834 297 82 22 chr13 89890449 89890955 -11982214 + L1ME LINE L1 5260 5803 -367 1965 138 10 3 chr13 89890978 89891267 -11981902 + AluSx SINE Alu 1 291 -21 1864 170 53 16 chr13 89891502 89891948 -11981221 - MER31A LTR ERV1 0 661 22 2523 92 11 24 chr13 89891948 89891986 -11981183 + THE1C LTR MaLR 1 38 -337 4023 201 15 31 chr13 89891986 89892657 -11980512 + PABL_A LTR ERV1 1 660 0 2523 92 11 24 chr13 89892657 89892998 -11980171 + THE1C LTR MaLR 38 375 0 10467 102 49 40 chr13 89892998 89894564 -11978605 + THE1C-int LTR MaLR 1 1580 0 2910 99 8 3 chr13 89894564 89894937 -11978232 + THE1C LTR MaLR 1 375 0 2518 161 24 12 chr13 89895225 89895646 -11977523 - MSTB LTR MaLR 0 426 1 262 300 69 15 chr13 89895646 89895765 -11977404 - L2 LINE L2 -8 3305 3177 387 247 182 32 chr13 89895976 89896130 -11977039 - MLT1J LTR MaLR -1 510 334 414 217 54 0 chr13 89897015 89897107 -11976062 + MER63 DNA MER1_type 652 748 -312 249 269 149 0 chr13 89897113 89897180 -11975989 + MER63 DNA MER1_type 984 1060 0 360 0 0 0 chr13 89897337 89897377 -11975792 + (CA)n Simple_repeat Simple_repeat 2 41 0 386 286 62 0 chr13 89897505 89897617 -11975552 + MIR3 SINE MIR 65 183 -25 201 235 0 59 chr13 89897587 89897638 -11975531 + L3 LINE CR1 1527 1574 -3 * 195 283 0 0 chr13 89898333 89898379 -11974790 - MIR SINE MIR -12 250 205 2451 93 0 3 chr13 89898651 89898963 -11974206 - AluSx SINE Alu -1 311 1 2261 88 3 0 chr13 89900086 89900402 -11972767 - AluSq SINE Alu 0 317 1 2109 124 0 0 chr13 89901224 89901514 -11971655 - AluSx SINE Alu -22 290 1 197 333 0 0 chr13 89903536 89903590 -11969579 - MIR SINE MIR -175 87 34 1744 171 82 50 chr13 89904218 89904544 -11968625 + MLT1C LTR MaLR 14 359 -108 1641 121 64 32 chr13 89904544 89904825 -11968344 - AluJb SINE Alu -22 290 1 1744 171 82 50 chr13 89904825 89904938 -11968231 + MLT1C LTR MaLR 359 467 0 1665 163 22 0 chr13 89905717 89905994 -11967175 + AluJo SINE Alu 13 295 -17 2021 136 0 13 chr13 89906129 89906430 -11966739 + AluSx SINE Alu 1 297 -15 22 35 0 0 chr13 89906681 89906710 -11966459 + AT_rich Low_complexity Low_complexity 1 29 0 2346 88 0 0 chr13 89906733 89907028 -11966141 + AluSc SINE Alu 13 307 -2 2011 138 3 16 chr13 89907030 89907341 -11965828 + AluJb SINE Alu 1 307 -5 2147 115 0 0 chr13 89907764 89908087 -11965082 + AluSc SINE Alu 1 323 0 198 0 0 0 chr13 89908448 89908470 -11964699 + (TA)n Simple_repeat Simple_repeat 2 23 0 1667 176 17 0 chr13 89909194 89909314 -11963855 + AluJb SINE Alu 1 117 -195 180 0 0 0 chr13 89909314 89909334 -11963835 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1667 176 17 0 chr13 89909334 89909502 -11963667 + AluJb SINE Alu 117 294 -18 1030 169 11 11 chr13 89912989 89913166 -11960003 - FRAM SINE Alu 0 176 1 937 150 0 0 chr13 89913296 89913429 -11959740 + FLAM_C SINE Alu 1 133 0 2113 125 0 0 chr13 89913477 89913764 -11959405 + AluSx SINE Alu 2 288 -24 228 180 60 0 chr13 89914331 89914381 -11958788 + L1ME LINE L1 34 86 -5984 1770 131 22 72 chr13 89914397 89914568 -11958601 - AluSx SINE Alu -7 305 156 2063 114 3 10 chr13 89914568 89914866 -11958303 - AluSg SINE Alu -14 296 1 1770 131 22 72 chr13 89914866 89915015 -11958154 - AluSx SINE Alu -156 156 1 4264 163 75 23 chr13 89915761 89916510 -11956659 - L1MB8 LINE L1 0 6178 5469 2149 112 10 0 chr13 89916510 89916804 -11956365 - AluSx SINE Alu -15 297 1 4264 163 75 23 chr13 89916804 89916884 -11956285 - L1MB8 LINE L1 -709 5469 5395 2127 105 14 10 chr13 89916884 89917179 -11955990 + AluSp SINE Alu 1 296 -17 4264 163 75 23 chr13 89917179 89917205 -11955964 - L1MB8 LINE L1 -783 5395 5281 227 371 0 0 chr13 89918435 89918497 -11954672 - MER91 DNA MER1_type 0 140 79 350 309 37 22 chr13 89918588 89918726 -11954443 - MIR SINE MIR -62 146 31 348 291 54 1 chr13 89918834 89918990 -11954179 - L1M4c LINE L1 -2400 3982 3816 3299 203 86 8 chr13 89919052 89919891 -11953278 - L1M4c LINE L1 -2742 3640 2737 1683 135 10 38 chr13 89919918 89920029 -11953140 - L1MB3 LINE L1 -25 6158 6045 2345 57 40 0 chr13 89920029 89920328 -11952841 - AluY SINE Alu 0 311 1 1683 135 10 38 chr13 89920328 89920504 -11952665 - L1MB3 LINE L1 -138 6045 5879 651 150 24 129 chr13 89920499 89920799 -11952370 - L1M4c LINE L1 -3803 2579 2324 * 10185 162 55 33 chr13 89920794 89920980 -11952189 - L1M4c LINE L1 -4269 2115 1935 1992 147 7 7 chr13 89920980 89921286 -11951883 - AluJo SINE Alu -6 306 1 10185 162 55 33 chr13 89921286 89921786 -11951383 - L1M4c LINE L1 -4449 1935 1447 2382 82 3 0 chr13 89921786 89922078 -11951091 - AluSp SINE Alu -20 293 1 10185 162 55 33 chr13 89922078 89923459 -11949710 - L1M4c LINE L1 -4937 1447 2 922 184 30 26 chr13 89923438 89923672 -11949497 - L1ME LINE L1 -3640 2742 2508 * 2003 230 61 24 chr13 89923652 89924274 -11948895 - L1ME LINE L1 -5179 891 247 265 129 29 0 chr13 89924323 89924393 -11948776 + (TG)n Simple_repeat Simple_repeat 1 72 0 1666 198 0 0 chr13 89925015 89925325 -11947844 + AluJb SINE Alu 1 310 0 21 57 0 0 chr13 89925690 89925725 -11947444 + AT_rich Low_complexity Low_complexity 1 35 0 903 71 9 0 chr13 89925778 89925891 -11947278 + L1MA1 LINE L1 6189 6302 0 233 299 30 0 chr13 89926004 89926071 -11947098 + (CATG)n Simple_repeat Simple_repeat 3 71 0 22 80 0 0 chr13 89926881 89926931 -11946238 + AT_rich Low_complexity Low_complexity 1 50 0 267 301 93 32 chr13 89927039 89927255 -11945914 - L1MC5 LINE L1 -94 7867 7639 482 258 94 69 chr13 89927457 89928028 -11945141 - L1MC5 LINE L1 -492 7495 7071 210 354 61 0 chr13 89928156 89928238 -11944931 - L2 LINE L2 -45 3227 3141 323 298 29 0 chr13 89928460 89928564 -11944605 - MIR SINE MIR -136 126 20 983 154 53 11 chr13 89929456 89929644 -11943525 + L1MB2 LINE L1 5975 6170 -1 1697 144 8 0 chr13 89929773 89930023 -11943146 + L1PA10 LINE L1 5908 6159 -9 197 156 0 22 chr13 89930057 89930102 -11943067 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 588 44 0 0 chr13 89930252 89930320 -11942849 + HY5 scRNA scRNA 9 76 -8 2359 91 7 3 chr13 89930327 89930635 -11942534 + AluSc SINE Alu 1 309 0 21 57 0 0 chr13 89931453 89931488 -11941681 + AT_rich Low_complexity Low_complexity 1 35 0 1804 165 0 31 chr13 89931565 89931887 -11941282 + AluJo SINE Alu 1 312 0 291 114 0 0 chr13 89932436 89932480 -11940689 + (CA)n Simple_repeat Simple_repeat 2 45 0 264 100 0 0 chr13 89932691 89932731 -11940438 + (TG)n Simple_repeat Simple_repeat 2 41 0 1853 181 116 37 chr13 89933042 89933474 -11939695 - MER31B LTR ERV1 0 466 1 332 260 166 30 chr13 89933601 89933770 -11939399 + MIR SINE MIR 71 262 0 390 279 95 88 chr13 89933923 89934206 -11938963 - L1MEd LINE L1 -5099 1020 736 380 238 73 68 chr13 89934211 89934417 -11938752 - Charlie7 DNA MER1_type -975 1637 1431 619 222 52 108 chr13 89934420 89934726 -11938443 - Charlie7 DNA MER1_type -2293 319 31 1024 225 8 33 chr13 89934761 89935005 -11938164 - MER58B DNA MER1_type 0 341 104 979 183 0 11 chr13 89935010 89935185 -11937984 - AluJo SINE Alu -11 301 129 28 38 0 19 chr13 89935185 89935204 -11937965 + AT_rich Low_complexity Low_complexity 1 19 -33 2442 58 0 10 chr13 89935204 89935496 -11937673 - AluY SINE Alu -20 291 3 28 38 0 19 chr13 89935496 89935529 -11937640 + AT_rich Low_complexity Low_complexity 19 52 0 939 131 0 0 chr13 89935529 89935651 -11937518 - AluJo SINE Alu -180 122 1 323 207 135 63 chr13 89935654 89935765 -11937404 - MER58B DNA MER1_type -221 120 2 209 213 64 0 chr13 89936255 89936302 -11936867 + L2 LINE L2 3219 3268 -4 1821 121 4 4 chr13 89939003 89939260 -11933909 + AluSq SINE Alu 6 262 -51 26 0 0 0 chr13 89939262 89939288 -11933881 + AT_rich Low_complexity Low_complexity 1 26 0 1952 144 0 0 chr13 89939808 89940115 -11933054 + AluSx SINE Alu 1 307 0 1432 170 41 30 chr13 89940937 89941207 -11931962 - MER61B LTR ERV1 -29 396 124 508 225 59 24 chr13 89941344 89941513 -11931656 + Charlie7 DNA MER1_type 2438 2612 0 32 35 0 18 chr13 89941974 89942000 -11931169 + AT_rich Low_complexity Low_complexity 1 26 -30 1785 43 0 68 chr13 89942000 89942235 -11930934 + AluY SINE Alu 5 223 -88 32 35 0 18 chr13 89942235 89942265 -11930904 + AT_rich Low_complexity Low_complexity 26 56 0 1838 150 0 37 chr13 89942446 89942746 -11930423 - AluJo SINE Alu -19 293 5 856 138 62 0 chr13 89943237 89943367 -11929802 + AluJo SINE Alu 5 142 -170 2033 146 0 16 chr13 89943541 89943849 -11929320 + AluSx SINE Alu 1 303 -9 299 194 39 117 chr13 89944055 89944158 -11929011 + MIR SINE MIR 118 212 -50 195 314 147 38 chr13 89944501 89944794 -11928375 + L2 LINE L2 2321 2645 -669 * 283 304 90 40 chr13 89944778 89945180 -11927989 - L1MEd LINE L1 -3459 2670 2249 750 269 51 84 chr13 89946014 89946427 -11926742 - L1MEd LINE L1 -868 1622 1258 5809 169 13 4 chr13 89946427 89948361 -11924808 + L1PA15 LINE L1 4217 6163 -2 750 269 51 84 chr13 89948361 89948713 -11924456 - L1MEd LINE L1 -1232 1258 896 457 322 28 23 chr13 89948880 89949057 -11924112 + MIR SINE MIR 48 225 -37 356 218 0 39 chr13 89949088 89949166 -11924003 + L2 LINE L2 3193 3267 -5 206 312 75 32 chr13 89949306 89949492 -11923677 - L2 LINE L2 -43 3270 3077 420 209 6 37 chr13 89949492 89949655 -11923514 + GA-rich Low_complexity Low_complexity 3 160 0 253 329 121 27 chr13 89949724 89949873 -11923296 - L2 LINE L2 -263 3050 2888 283 64 21 0 chr13 89949873 89949920 -11923249 + L1PA8 LINE L1 6125 6172 0 661 287 7 86 chr13 89949922 89949961 -11923208 - L2 LINE L2 -419 2895 2855 1818 130 14 3 chr13 89949961 89950246 -11922923 + AluSx SINE Alu 1 288 -24 661 287 7 86 chr13 89950246 89950485 -11922684 - L2 LINE L2 -459 2855 2639 357 320 111 55 chr13 89953448 89953870 -11919299 - L2 LINE L2 0 3272 2827 1540 100 73 0 chr13 89954184 89954445 -11918724 + L1MA8 LINE L1 6005 6284 -7 23 0 0 0 chr13 89954451 89954474 -11918695 + AT_rich Low_complexity Low_complexity 1 23 0 1789 160 7 10 chr13 89955750 89956057 -11917112 - AluJo SINE Alu -6 306 1 2151 134 3 0 chr13 89957226 89957532 -11915637 + AluSx SINE Alu 1 307 -5 768 303 200 16 chr13 89958700 89959135 -11914034 + L3 LINE CR1 1051 1565 -12 631 274 48 7 chr13 89959293 89959473 -11913696 + MIR SINE MIR 1 185 -63 689 199 29 18 chr13 89959477 89959648 -11913521 - L1MB8 LINE L1 -27 6151 5979 440 157 12 0 chr13 89959922 89960005 -11913164 - L1MD1 LINE L1 -8 6234 6151 297 269 72 93 chr13 89960686 89960879 -11912290 - MER5B DNA MER1_type 0 189 1 25 0 0 0 chr13 89960970 89960995 -11912174 + AT_rich Low_complexity Low_complexity 1 25 0 198 103 0 0 chr13 89961159 89961188 -11911981 + (A)n Simple_repeat Simple_repeat 1 29 0 1417 155 155 11 chr13 89961200 89961464 -11911705 + AluJb SINE Alu 1 302 0 1065 164 27 0 chr13 89962269 89962452 -11910717 + MER5A DNA MER1_type 1 188 -1 364 271 133 40 chr13 89964431 89964656 -11908513 + MIR SINE MIR 17 262 0 413 327 89 47 chr13 89964674 89965056 -11908113 + L2 LINE L2 2875 3272 0 22 0 0 0 chr13 89965674 89965696 -11907473 + AT_rich Low_complexity Low_complexity 1 22 0 418 242 62 19 chr13 89966158 89966319 -11906850 + L1ME LINE L1 500 667 -5403 409 188 12 12 chr13 89966458 89966538 -11906631 - AluS SINE Alu -232 80 1 394 326 0 37 chr13 89966878 89967013 -11906156 + MER5B DNA MER1_type 9 138 -40 1560 244 50 2 chr13 89967495 89967950 -11905219 - L1ME2 LINE L1 -8 6156 5680 32 0 0 0 chr13 89967955 89967987 -11905182 + AT_rich Low_complexity Low_complexity 1 32 0 985 83 0 15 chr13 89968014 89968146 -11905023 + AluJ SINE Alu 3 132 -170 687 216 0 0 chr13 89968146 89968262 -11904907 + AluJ SINE Alu 183 298 -14 1674 157 48 27 chr13 89968262 89968437 -11904732 - L1MB7 LINE L1 -61 6123 5953 1982 158 3 0 chr13 89968437 89968748 -11904421 - AluSx SINE Alu 0 312 1 1674 157 48 27 chr13 89968748 89969049 -11904120 - L1MB7 LINE L1 -231 5953 5558 1322 241 93 70 chr13 89969052 89969230 -11903939 - L1MB7 LINE L1 -967 5179 5007 1749 197 0 3 chr13 89969230 89969529 -11903640 - AluJo SINE Alu -14 298 1 1322 241 93 70 chr13 89969529 89969921 -11903248 - L1MB7 LINE L1 -1139 5007 4625 1782 160 35 0 chr13 89969921 89970209 -11902960 + AluJb SINE Alu 1 298 -14 1322 241 93 70 chr13 89970209 89970354 -11902815 - L1MB7 LINE L1 -1521 4625 4485 4323 91 11 3 chr13 89970354 89970971 -11902198 + L1PB2 LINE L1 5527 6148 -3 1322 241 93 70 chr13 89970971 89971221 -11901948 - L1MB7 LINE L1 -1661 4485 4190 239 163 0 0 chr13 89971708 89971751 -11901418 - MLT1K LTR MaLR 0 588 546 1975 56 0 0 chr13 89973389 89973620 -11899549 + AluY SINE Alu 72 302 -9 24 32 0 0 chr13 89974214 89974245 -11898924 + AT_rich Low_complexity Low_complexity 1 31 0 522 105 0 0 chr13 89974651 89974727 -11898442 - MER116 DNA Mariner 0 80 5 668 212 61 66 chr13 89975074 89975286 -11897883 + MIR SINE MIR 52 262 0 2172 88 32 0 chr13 89975429 89975713 -11897456 - AluSx SINE Alu -19 293 1 196 288 34 0 chr13 89976104 89976163 -11897006 - MIR SINE MIR -63 145 85 1830 161 49 49 chr13 89976164 89976554 -11896615 - MLT1B LTR MaLR 0 390 1 219 326 159 23 chr13 89976670 89976802 -11896367 - L2 LINE L2 -6 3266 3117 1598 165 81 0 chr13 89976991 89977276 -11895893 + AluJo SINE Alu 5 312 0 183 276 120 52 chr13 89977406 89977598 -11895571 - MIR SINE MIR -38 224 20 1660 122 23 25 chr13 89977708 89978052 -11895117 - MER4A LTR ERV1 0 664 263 449 105 12 35 chr13 89978052 89978138 -11895031 - MER4A LTR ERV1 -566 98 15 1136 169 28 33 chr13 89978328 89978541 -11894628 + AluJo SINE Alu 85 296 -16 866 182 30 15 chr13 89979423 89979626 -11893543 + MER2 DNA MER2_type 1 206 -139 362 273 133 18 chr13 89979757 89979922 -11893247 + MIR SINE MIR 31 214 -48 216 0 0 0 chr13 89980583 89980607 -11892562 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1515 158 8 0 chr13 89980793 89981033 -11892136 + AluJb SINE Alu 1 242 -70 300 280 51 69 chr13 89981756 89981931 -11891238 - MER5B DNA MER1_type -6 172 1 238 216 20 137 chr13 89982305 89982407 -11890762 + L2 LINE L2 3202 3291 -22 266 237 62 41 chr13 89982655 89982752 -11890417 + L2 LINE L2 3182 3280 -33 2103 106 55 0 chr13 89982848 89983140 -11890029 - AluSx SINE Alu -4 308 1 338 257 163 36 chr13 89983194 89983452 -11889717 - L2 LINE L2 -236 3036 2728 342 276 231 11 chr13 89983530 89983889 -11889280 - L2 LINE L2 -852 2462 2025 288 284 81 56 chr13 89984042 89984216 -11888953 - L1ME4a LINE L1 -171 5950 5782 2515 55 0 0 chr13 89984216 89984507 -11888662 - AluSc SINE Alu -18 291 1 288 284 81 56 chr13 89984507 89984727 -11888442 - L1ME4a LINE L1 -339 5782 5546 392 268 104 23 chr13 89985460 89985680 -11887489 - MARNA DNA Mariner -78 508 271 477 88 100 12 chr13 89985758 89985838 -11887331 + FLAM SINE Alu 38 124 -19 2332 90 13 3 chr13 89988164 89988465 -11884704 - AluSx SINE Alu -8 304 1 374 311 44 108 chr13 89988497 89988905 -11884264 + L2 LINE L2 2855 3236 -36 210 292 15 0 chr13 89989162 89989227 -11883942 + (TA)n Simple_repeat Simple_repeat 2 67 0 281 264 0 14 chr13 89989405 89989477 -11883692 + (TATATG)n Simple_repeat Simple_repeat 2 72 0 595 275 192 30 chr13 89989478 89989915 -11883254 - MLT1G3 LTR MaLR 0 567 60 463 364 34 5 chr13 89990170 89990376 -11882793 + MIR SINE MIR 15 226 -36 538 280 192 47 chr13 89990607 89990835 -11882334 + L2 LINE L2 2896 3089 -224 183 80 0 0 chr13 89990835 89990860 -11882309 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 538 280 192 47 chr13 89990860 89990995 -11882174 + L2 LINE L2 3089 3312 -1 325 326 0 0 chr13 89991624 89991710 -11881459 + L2 LINE L2 3183 3268 -4 243 228 0 18 chr13 89992690 89992747 -11880422 + (TAA)n Simple_repeat Simple_repeat 1 56 0 4324 151 18 10 chr13 89992750 89993473 -11879696 + MER44D DNA MER2_type 4 604 -1 770 306 51 4 chr13 89993475 89993710 -11879459 + MIR SINE MIR 17 262 0 189 294 20 0 chr13 89993826 89993877 -11879292 + L2 LINE L2 3219 3270 -2 2330 103 0 0 chr13 89993901 89994203 -11878966 - AluSq SINE Alu -11 302 1 280 268 9 80 chr13 89996071 89996183 -11876986 - MIR3 SINE MIR -34 174 71 296 236 75 0 chr13 89996290 89996396 -11876773 - L1MC4 LINE L1 0 8042 7929 754 235 33 27 chr13 89996475 89996658 -11876511 - MER82 DNA MER2_type -6 647 464 243 315 82 54 chr13 89996722 89996906 -11876263 + MIR SINE MIR 21 209 -53 201 222 22 0 chr13 89996911 89996956 -11876213 + (TA)n Simple_repeat Simple_repeat 2 47 0 328 262 12 0 chr13 89996957 89997041 -11876128 - MER82 DNA MER2_type -566 87 3 360 0 0 0 chr13 89997041 89997081 -11876088 + (CA)n Simple_repeat Simple_repeat 1 40 0 3001 199 103 5 chr13 89997090 89997906 -11875263 - L1MC4 LINE L1 -687 7355 6460 2747 201 108 5 chr13 89999222 89999983 -11873186 - L1MC4 LINE L1 -744 7298 6460 532 315 184 22 chr13 90002174 90002587 -11870582 - L2 LINE L2 -5 3308 2829 894 248 93 3 chr13 90002625 90002927 -11870242 - L2 LINE L2 -800 2514 2186 23 54 0 0 chr13 90002955 90002992 -11870177 + AT_rich Low_complexity Low_complexity 1 37 0 21 95 0 0 chr13 90003030 90003093 -11870076 + AT_rich Low_complexity Low_complexity 1 63 0 314 248 86 9 chr13 90003507 90003612 -11869557 - L2 LINE L2 -1 3271 3159 464 146 12 0 chr13 90003926 90004008 -11869161 - L1MB8 LINE L1 -15 6163 6081 201 184 26 0 chr13 90004447 90004485 -11868684 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 358 237 58 114 chr13 90005154 90005444 -11867725 + Charlie8 DNA MER1_type 19 277 -2140 382 287 42 14 chr13 90005959 90006102 -11867067 - MLT1G1 LTR MaLR -18 577 431 208 191 21 0 chr13 90006577 90006624 -11866545 + (TA)n Simple_repeat Simple_repeat 1 48 0 236 200 71 71 chr13 90006747 90006817 -11866352 - MIR SINE MIR -96 166 97 493 274 130 1 chr13 90006837 90007028 -11866141 + MIR SINE MIR 50 262 0 185 0 40 0 chr13 90007554 90007579 -11865590 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 731 135 0 0 chr13 90007586 90007697 -11865472 - FRAM SINE Alu -33 143 33 2333 52 10 7 chr13 90009521 90009811 -11863358 - AluY SINE Alu -20 291 1 260 248 88 9 chr13 90012949 90013062 -11860107 - L1MDb LINE L1 -5103 1293 1172 327 232 251 13 chr13 90013066 90013258 -11859911 - L1MDb LINE L1 -5212 1184 928 613 200 9 0 chr13 90014201 90014316 -11858853 - AluJb SINE Alu -23 289 174 182 333 35 0 chr13 90014870 90014927 -11858242 + L2 LINE L2 3027 3085 -187 21 36 0 0 chr13 90015949 90015977 -11857192 + AT_rich Low_complexity Low_complexity 1 28 0 783 324 35 10 chr13 90017944 90018234 -11854935 - LTR16B LTR ERVL -2 462 166 581 303 77 61 chr13 90018369 90018798 -11854371 + L2 LINE L2 2362 2797 -517 252 360 40 0 chr13 90018852 90018952 -11854217 + L2 LINE L2 2896 2999 -273 216 97 0 0 chr13 90019106 90019137 -11854032 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 217 372 172 24 chr13 90019704 90019954 -11853215 + L2 LINE L2 2578 2864 -450 402 168 0 32 chr13 90019970 90020065 -11853104 + Ricksha DNA DNA 9 100 -3146 * 7242 137 68 48 chr13 90020050 90021177 -11851992 + Ricksha DNA DNA 1710 2875 -371 579 164 127 9 chr13 90021177 90021287 -11851882 - FLAM_A SINE Alu -10 123 1 7242 137 68 48 chr13 90021287 90021666 -11851503 + Ricksha DNA DNA 2875 3245 -1 241 45 23 23 chr13 90022347 90022391 -11850778 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 22 56 0 0 chr13 90023344 90023380 -11849789 + AT_rich Low_complexity Low_complexity 1 36 0 246 32 0 0 chr13 90024136 90024167 -11849002 + (CA)n Simple_repeat Simple_repeat 2 32 0 1094 311 161 18 chr13 90024182 90024802 -11848367 - L3 LINE CR1 -296 1281 573 312 257 14 0 chr13 90024913 90024983 -11848186 + L2 LINE L2 3167 3237 -35 1774 177 0 3 chr13 90025728 90026034 -11847135 - AluSx SINE Alu 0 305 1 2100 80 48 7 chr13 90027311 90027600 -11845569 - AluSx SINE Alu -11 301 1 411 98 0 0 chr13 90029833 90029894 -11843275 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr13 90030120 90030141 -11843028 + AT_rich Low_complexity Low_complexity 1 21 0 541 270 97 16 chr13 90031116 90031301 -11841868 - MIR SINE MIR -57 205 6 531 272 96 38 chr13 90031449 90031688 -11841481 - L2 LINE L2 -257 3056 2804 1219 240 51 5 chr13 90031693 90032068 -11841101 - LTR16A LTR ERVL 0 450 59 557 261 202 16 chr13 90032106 90032413 -11840756 - L2 LINE L2 -493 2821 2458 2475 167 43 94 chr13 90035227 90035950 -11837219 + L1PA13 LINE L1 5478 6163 0 860 237 141 42 chr13 90036221 90036685 -11836484 - L2 LINE L2 -3 3310 2768 2121 134 31 28 chr13 90036685 90037044 -11836125 + THE1B LTR MaLR 5 364 0 860 237 141 42 chr13 90037044 90037271 -11835898 - L2 LINE L2 -545 2768 2565 310 368 78 28 chr13 90038082 90038650 -11834519 + L2 LINE L2 2379 2974 -340 1825 126 0 4 chr13 90038957 90039218 -11833951 - AluSg SINE Alu -9 301 42 256 321 138 18 chr13 90040641 90040859 -11832310 + L2 LINE L2 2734 2977 -337 2373 74 3 0 chr13 90040915 90041213 -11831956 - AluY SINE Alu -12 299 1 2207 126 3 0 chr13 90041887 90042189 -11830980 - AluSx SINE Alu -9 303 1 453 256 185 15 chr13 90043976 90044171 -11828998 - MIR SINE MIR -21 241 14 2301 108 0 6 chr13 90045372 90045686 -11827483 + AluSx SINE Alu 1 312 0 240 86 0 0 chr13 90047850 90047885 -11825284 + (TG)n Simple_repeat Simple_repeat 2 36 0 1815 160 0 21 chr13 90047888 90048176 -11824993 - AluJo SINE Alu -30 282 1 4346 160 48 40 chr13 90049745 90050035 -11823134 - L1MC3 LINE L1 -21 7764 7478 1872 165 7 10 chr13 90050035 90050344 -11822825 - AluJb SINE Alu -4 308 1 4346 160 48 40 chr13 90050344 90050535 -11822634 - L1MC3 LINE L1 -307 7478 7290 951 225 12 0 chr13 90050535 90050708 -11822461 - FAM SINE Alu 0 175 1 4346 160 48 40 chr13 90050708 90051093 -11822076 - L1MC3 LINE L1 -495 7290 6890 299 260 130 8 chr13 90051426 90051549 -11821620 - MIR SINE MIR -6 256 119 559 229 175 6 chr13 90051567 90051858 -11821311 + MLT1F LTR MaLR 216 540 -2 230 298 36 0 chr13 90052147 90052231 -11820938 + MIR SINE MIR 64 150 -112 276 313 12 55 chr13 90052904 90053067 -11820102 - L2 LINE L2 0 3313 3158 655 237 232 50 chr13 90053109 90053531 -11819638 + MLT1J LTR MaLR 7 505 -6 1866 199 18 39 chr13 90053551 90053748 -11819421 - MLT1A2 LTR MaLR 0 374 187 321 26 0 0 chr13 90053748 90053786 -11819383 + (GA)n Simple_repeat Simple_repeat 2 39 0 1866 199 18 39 chr13 90053786 90053970 -11819199 - MLT1A2 LTR MaLR -187 187 1 554 343 77 19 chr13 90054049 90054479 -11818690 - L2 LINE L2 -338 2976 2426 385 290 189 14 chr13 90054687 90054904 -11818265 + MIR SINE MIR 3 257 -5 282 317 96 71 chr13 90057049 90057402 -11815767 - L2 LINE L2 -14 3258 2897 1501 117 32 14 chr13 90057523 90057803 -11815366 + THE1C LTR MaLR 1 375 0 329 243 33 21 chr13 90057903 90058033 -11815136 - MLT1I LTR MaLR -5 445 315 521 252 100 9 chr13 90058084 90058294 -11814875 - MLT1J2 LTR MaLR -216 234 6 209 250 77 67 chr13 90058678 90058782 -11814387 + L2 LINE L2 3168 3272 0 205 303 30 30 chr13 90059592 90059691 -11813478 - L2 LINE L2 0 3272 3174 221 145 81 0 chr13 90059985 90060047 -11813122 + (TA)n Simple_repeat Simple_repeat 1 67 0 279 0 0 0 chr13 90060190 90060221 -11812948 + (CA)n Simple_repeat Simple_repeat 2 32 0 273 268 31 0 chr13 90060649 90060746 -11812423 - MER103 DNA DNA -29 137 38 1582 228 64 58 chr13 90061158 90061379 -11811790 - LTR40a LTR ERVL 0 519 301 233 70 47 0 chr13 90061379 90061422 -11811747 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2782 80 0 0 chr13 90061422 90061758 -11811411 - L1PA8 LINE L1 -17 6155 5820 1582 228 64 58 chr13 90061758 90061874 -11811295 - LTR40a LTR ERVL -218 301 187 2089 130 0 17 chr13 90061874 90062173 -11810996 - AluSq SINE Alu -19 294 1 1582 228 64 58 chr13 90062173 90062347 -11810822 - LTR40a LTR ERVL -332 187 3 241 214 18 0 chr13 90063002 90063058 -11810111 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 581 234 83 67 chr13 90063163 90063279 -11809890 + MER5C DNA MER1_type 3 116 -208 2333 109 3 0 chr13 90063279 90063581 -11809588 - AluSx SINE Alu -5 307 5 581 234 83 67 chr13 90063581 90063776 -11809393 + MER5C DNA MER1_type 116 319 -5 528 190 26 26 chr13 90064065 90064181 -11808988 - MIR SINE MIR -104 158 43 294 283 210 10 chr13 90064674 90064879 -11808290 - MIR SINE MIR -15 247 2 819 262 94 55 chr13 90065064 90065480 -11807689 + MLT1H LTR MaLR 118 549 0 28 0 0 0 chr13 90065589 90065617 -11807552 + AT_rich Low_complexity Low_complexity 1 28 0 267 255 0 0 chr13 90065661 90065712 -11807457 + polypyrimidine Low_complexity Low_complexity 5 55 0 467 313 70 14 chr13 90065741 90065955 -11807214 - L1MC4 LINE L1 -249 7793 7568 192 40 0 0 chr13 90066850 90066875 -11806294 + (TG)n Simple_repeat Simple_repeat 1 25 0 261 75 0 0 chr13 90066875 90066915 -11806254 + (GA)n Simple_repeat Simple_repeat 2 41 0 535 247 212 0 chr13 90067851 90067997 -11805172 - MER5A DNA MER1_type 0 189 13 403 214 15 84 chr13 90068084 90068131 -11805038 + MER5A DNA MER1_type 54 103 -86 2102 218 58 84 chr13 90068131 90068571 -11804598 + MLT1E2 LTR MaLR 1 451 -175 1835 164 4 0 chr13 90068571 90068852 -11804317 + AluJo SINE Alu 1 282 -30 2102 218 58 84 chr13 90068852 90068885 -11804284 + MLT1E2 LTR MaLR 451 483 -143 2005 167 3 3 chr13 90068885 90069197 -11803972 + AluJb SINE Alu 1 312 0 2102 218 58 84 chr13 90069197 90069363 -11803806 + MLT1E2 LTR MaLR 483 624 -2 403 214 15 84 chr13 90069363 90069446 -11803723 + MER5A DNA MER1_type 103 175 -14 181 283 0 98 chr13 90069485 90069577 -11803592 + MIR SINE MIR 70 152 -110 491 215 203 25 chr13 90070997 90071155 -11802014 + MER5A DNA MER1_type 4 189 0 273 57 0 0 chr13 90071721 90071756 -11801413 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 2380 116 105 8 chr13 90071756 90072137 -11801032 - MSTA LTR MaLR -10 418 1 441 36 0 0 chr13 90072155 90072210 -11800959 + (CCTA)n Simple_repeat Simple_repeat 1 55 0 207 200 25 0 chr13 90073185 90073225 -11799944 + L2 LINE L2 3218 3258 -14 1679 227 6 0 chr13 90073634 90073991 -11799178 - L1MD3 LINE L1 -1 7994 7636 352 365 14 7 chr13 90073991 90074139 -11799030 + MIR3 SINE MIR 45 193 -15 772 161 8 0 chr13 90074200 90074318 -11798851 - FLAM_A SINE Alu -18 124 6 1365 156 0 5 chr13 90077019 90077231 -11795938 - L1PA15 LINE L1 -2 6163 5953 2253 104 10 0 chr13 90077274 90077573 -11795596 + AluSp SINE Alu 1 302 -11 201 200 22 0 chr13 90077644 90077689 -11795480 + (CAAT)n Simple_repeat Simple_repeat 3 48 0 181 379 121 30 chr13 90077750 90077882 -11795287 - L2 LINE L2 0 3272 3129 437 247 0 82 chr13 90077949 90078119 -11795050 - L2 LINE L2 0 3313 3158 316 289 75 102 chr13 90078371 90078558 -11794611 + MIR3 SINE MIR 11 192 -16 225 247 65 32 chr13 90078944 90079037 -11794132 + MIR SINE MIR 15 110 -152 533 323 41 9 chr13 90080113 90080333 -11792836 + MIR SINE MIR 6 232 -30 850 201 126 100 chr13 90081412 90081681 -11791488 - L1MB1 LINE L1 -1 6167 5892 2053 105 10 26 chr13 90081730 90082036 -11791133 - AluSq SINE Alu -12 301 1 212 280 0 0 chr13 90082062 90082112 -11791057 + L2 LINE L2 3254 3303 -10 2133 120 7 0 chr13 90082156 90082455 -11790714 + AluSx SINE Alu 3 303 -9 391 197 110 47 chr13 90082600 90082727 -11790442 - MIR SINE MIR 0 262 128 2862 131 7 16 chr13 90082919 90083355 -11789814 - L1PB3 LINE L1 0 6154 5723 428 86 14 0 chr13 90084353 90084423 -11788746 + (GA)n Simple_repeat Simple_repeat 1 71 0 21 36 0 0 chr13 90086803 90086831 -11786338 + AT_rich Low_complexity Low_complexity 1 28 0 416 99 0 12 chr13 90087018 90087099 -11786070 + (GA)n Simple_repeat Simple_repeat 1 80 0 444 297 39 0 chr13 90087285 90087413 -11785756 + MER94 DNA DNA 1 133 -1 2378 88 3 3 chr13 90089395 90089701 -11783468 - AluSg SINE Alu -4 306 1 2542 191 28 42 chr13 90090135 90090701 -11782468 - MLT1F1 LTR MaLR -2 565 8 216 363 26 18 chr13 90092596 90092709 -11780460 - MIR3 SINE MIR -30 178 65 2075 119 40 10 chr13 90092997 90093300 -11779869 + AluSx SINE Alu 1 312 0 279 175 0 0 chr13 90093537 90093594 -11779575 + GA-rich Low_complexity Low_complexity 3 59 0 22 56 0 0 chr13 90093684 90093720 -11779449 + AT_rich Low_complexity Low_complexity 1 36 0 336 195 13 39 chr13 90094075 90094152 -11779017 + L2 LINE L2 3235 3309 -4 501 47 0 0 chr13 90095853 90095917 -11777252 - AluY SINE Alu -10 302 239 808 71 0 27 chr13 90095918 90096030 -11777139 - AluY SINE Alu -202 109 1 1672 93 35 0 chr13 90096034 90096260 -11776909 - AluSc SINE Alu -11 298 65 2778 132 2 19 chr13 90096948 90097365 -11775804 - L1PA13 LINE L1 -11 6152 5743 2178 140 27 16 chr13 90097562 90097933 -11775236 - THE1C LTR MaLR 0 375 1 9889 108 38 49 chr13 90097935 90099530 -11773639 - THE1C-int LTR MaLR -2 1578 1 2027 133 71 17 chr13 90099530 90099883 -11773286 - THE1C LTR MaLR 0 375 4 1651 178 7 29 chr13 90100036 90100345 -11772824 - AluJo SINE Alu -10 302 1 1941 203 75 6 chr13 90100399 90100902 -11772267 - L1M4 LINE L1 -838 5308 4771 709 304 77 21 chr13 90101763 90102099 -11771070 - L2 LINE L2 0 3313 2959 1079 252 53 86 chr13 90102111 90102282 -11770887 - L2 LINE L2 -461 2853 2678 1926 164 0 0 chr13 90102282 90102575 -11770594 + AluSx SINE Alu 1 293 -19 1079 252 53 86 chr13 90102575 90102749 -11770420 - L2 LINE L2 -636 2678 2530 1762 209 20 6 chr13 90102749 90103107 -11770062 - MLT1A1 LTR MaLR 0 365 3 1079 252 53 86 chr13 90103107 90103307 -11769862 - L2 LINE L2 -784 2530 2325 993 204 5 0 chr13 90103737 90103953 -11769216 - L1MB4 LINE L1 -6 6174 5958 25 31 0 0 chr13 90103953 90103985 -11769184 + AT_rich Low_complexity Low_complexity 1 32 0 3684 173 38 25 chr13 90104000 90104800 -11768369 - L1MA6 LINE L1 -22 6278 5469 2155 139 116 13 chr13 90105061 90105449 -11767720 - MSTA LTR MaLR 0 428 1 7956 180 24 44 chr13 90105449 90107134 -11766035 - MSTA-int LTR MaLR 0 1651 1 2109 132 127 18 chr13 90107134 90107520 -11765649 - MSTA LTR MaLR 0 428 1 1871 156 3 10 chr13 90107917 90108212 -11764957 - AluJb SINE Alu -19 293 1 358 212 30 30 chr13 90108811 90108910 -11764259 - L1ME LINE L1 -689 5432 5334 184 208 21 0 chr13 90108990 90109086 -11764083 + (TA)n Simple_repeat Simple_repeat 1 98 0 1457 201 65 21 chr13 90110807 90111225 -11761944 + MLT1C LTR MaLR 6 441 -26 1162 130 0 0 chr13 90112621 90112783 -11760386 - AluSg/x SINE Alu -17 293 132 230 284 95 14 chr13 90113548 90113622 -11759547 - L2 LINE L2 0 3313 3234 240 146 0 0 chr13 90114608 90114649 -11758520 - L2 LINE L2 -5 3308 3268 407 335 43 6 chr13 90116092 90116255 -11756914 + MIR SINE MIR 22 193 -62 334 324 101 62 chr13 90118899 90119400 -11753769 + L2 LINE L2 2749 3271 -1 677 278 121 43 chr13 90120754 90121243 -11751926 + MLT1F LTR MaLR 12 538 -4 29 28 0 0 chr13 90121604 90121640 -11751529 + AT_rich Low_complexity Low_complexity 1 36 0 408 329 24 0 chr13 90122630 90122794 -11750375 + (TCCA)n Simple_repeat Simple_repeat 3 170 0 225 260 0 0 chr13 90122838 90122888 -11750281 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 207 100 0 0 chr13 90124059 90124089 -11749080 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 359 305 66 23 chr13 90124348 90124528 -11748641 + MIR SINE MIR 2 183 -25 257 305 167 75 chr13 90124759 90125238 -11747931 + L2 LINE L2 2018 2540 -774 333 319 56 106 chr13 90125384 90125845 -11747324 + L2 LINE L2 2835 3272 0 2810 151 54 18 chr13 90125997 90126041 -11747128 - MLT2B1 LTR ERVL 0 520 479 180 77 0 0 chr13 90126041 90126067 -11747102 + (TA)n Simple_repeat Simple_repeat 2 27 0 2810 151 54 18 chr13 90126067 90126524 -11746645 - MLT2B1 LTR ERVL -41 479 1 350 269 0 14 chr13 90127783 90127924 -11745245 + CT-rich Low_complexity Low_complexity 2 140 0 237 284 45 23 chr13 90128651 90128739 -11744430 + MIR SINE MIR 58 147 -61 227 351 39 0 chr13 90128749 90128826 -11744343 + MIR3 SINE MIR 115 194 -14 390 57 0 0 chr13 90128843 90128896 -11744273 + (CA)n Simple_repeat Simple_repeat 2 54 0 1086 184 60 80 chr13 90130029 90130434 -11742735 - MLT1B LTR MaLR 0 396 5 235 173 115 0 chr13 90130436 90130488 -11742681 - MLT1A2 LTR MaLR -313 61 4 302 312 77 13 chr13 90130890 90131072 -11742097 - MIR SINE MIR -52 210 14 6110 155 43 6 chr13 90133678 90134872 -11738297 - L1MA8 LINE L1 -3 6288 5140 1779 94 116 31 chr13 90134872 90135191 -11737978 - L1PA13 LINE L1 -2 6161 5816 4807 52 3 0 chr13 90135196 90135786 -11737383 - L1PA7 LINE L1 0 6154 5563 6110 155 43 6 chr13 90135786 90136652 -11736517 - L1MA8 LINE L1 -1154 5137 4147 401 101 56 11 chr13 90136654 90136743 -11736426 + CT-rich Low_complexity Low_complexity 1 93 0 2972 250 103 31 chr13 90136749 90138830 -11734339 - L1M1 LINE L1 -4070 3036 1116 4969 132 13 75 chr13 90138889 90139963 -11733206 - Ricksha_b DNA DNA -8 1246 239 1996 138 24 0 chr13 90139986 90140283 -11732886 - AluSx SINE Alu -8 304 1 416 167 89 11 chr13 90140288 90140378 -11732791 - Ricksha_b DNA DNA -1155 99 3 2677 220 76 27 chr13 90140385 90141263 -11731906 - L1M1 LINE L1 -6102 928 8 195 326 0 0 chr13 90142042 90142091 -11731078 + L2 LINE L2 3244 3292 -21 2057 137 17 0 chr13 90142912 90143204 -11729965 - AluSx SINE Alu -15 297 1 1565 140 21 0 chr13 90143205 90143441 -11729728 - AluSp SINE Alu -70 243 3 283 242 48 105 chr13 90143561 90143685 -11729484 - MIR SINE MIR -57 151 35 1167 196 61 40 chr13 90143750 90144076 -11729093 + MER2 DNA MER2_type 13 345 0 197 323 16 0 chr13 90144118 90144180 -11728989 - L2 LINE L2 -86 3227 3165 2147 118 0 7 chr13 90144180 90144512 -11728657 + AluSx SINE Alu 1 312 0 344 366 143 17 chr13 90146518 90146931 -11726238 - L2 LINE L2 -649 2665 2201 266 348 61 9 chr13 90147142 90147257 -11725912 - L2 LINE L2 -10 3303 3183 228 244 44 22 chr13 90150330 90150420 -11722749 - MLT1J LTR MaLR -331 180 89 483 256 77 50 chr13 90151401 90151741 -11721428 - Charlie2a DNA MER1_type -19 2843 2495 806 291 36 0 chr13 90151794 90152014 -11721155 + MIR SINE MIR 14 241 -21 1070 245 83 23 chr13 90152020 90152490 -11720679 - Charlie2a DNA MER1_type -677 2185 1688 562 276 55 0 chr13 90152497 90152696 -11720473 - L1ME1 LINE L1 -5 6161 5952 984 193 109 79 chr13 90152700 90153094 -11720075 - L1ME1 LINE L1 -500 5664 5259 487 214 138 19 chr13 90153112 90153271 -11719898 - Charlie2a DNA MER1_type -1194 1668 1491 805 256 114 58 chr13 90153363 90153983 -11719186 - Charlie2b DNA MER1_type -2122 660 6 278 105 57 38 chr13 90154214 90154319 -11718850 + (TA)n Simple_repeat Simple_repeat 1 107 0 216 286 0 0 chr13 90154400 90154449 -11718720 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 185 180 20 0 chr13 90156655 90156705 -11716464 + (TA)n Simple_repeat Simple_repeat 1 51 0 465 231 30 22 chr13 90157862 90157996 -11715173 + MIR SINE MIR 127 261 -1 273 275 69 50 chr13 90158096 90158256 -11714913 - L3 LINE CR1 -608 969 807 334 137 14 14 chr13 90158260 90158333 -11714836 + CT-rich Low_complexity Low_complexity 4 76 0 312 280 93 0 chr13 90158507 90158625 -11714544 - L3 LINE CR1 -985 592 464 663 39 0 0 chr13 90158894 90158971 -11714198 - AluY SINE Alu -186 125 49 1452 112 0 19 chr13 90158971 90159185 -11713984 + AluY SINE Alu 102 311 0 220 225 0 0 chr13 90159575 90159615 -11713554 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 29 0 0 0 chr13 90160414 90160443 -11712726 + AT_rich Low_complexity Low_complexity 1 29 0 1725 126 31 58 chr13 90160633 90160927 -11712242 + AluJo SINE Alu 11 296 -16 414 321 49 6 chr13 90160936 90161098 -11712071 - MIR SINE MIR -74 188 20 1377 190 44 82 chr13 90161567 90161972 -11711197 + MLT1B LTR MaLR 1 390 0 205 308 47 37 chr13 90162494 90162601 -11710568 + MIR SINE MIR 42 149 -113 598 164 125 0 chr13 90163104 90163208 -11709961 + FLAM_C SINE Alu 1 117 -16 195 100 0 0 chr13 90163612 90163642 -11709527 + (CA)n Simple_repeat Simple_repeat 2 31 0 420 20 0 0 chr13 90163846 90163895 -11709274 + (TG)n Simple_repeat Simple_repeat 1 49 0 32 0 0 0 chr13 90163943 90163975 -11709194 + AT_rich Low_complexity Low_complexity 1 32 0 1905 113 128 76 chr13 90164759 90165166 -11708003 + MSTA LTR MaLR 1 428 0 510 278 127 5 chr13 90165829 90166034 -11707135 + MIR SINE MIR 28 257 -5 4463 98 2 14 chr13 90166399 90167040 -11706129 + LTR10E LTR ERV1 1 633 0 245 211 0 19 chr13 90167058 90167110 -11706059 + T-rich Low_complexity Low_complexity 1 51 0 447 214 119 94 chr13 90167742 90167901 -11705268 - L3 LINE CR1 -5 1572 1410 2119 123 10 0 chr13 90168364 90168656 -11704513 + AluSx SINE Alu 1 295 -17 6041 88 2 0 chr13 90169215 90170088 -11703081 - L1PA13 LINE L1 0 6163 5289 566 124 0 0 chr13 90170084 90170173 -11702996 + L1P LINE L1 5141 5229 -917 * 397 259 69 15 chr13 90170946 90171077 -11702092 + MIR SINE MIR 18 155 -107 1924 140 31 0 chr13 90171146 90171439 -11701730 - AluJb SINE Alu -9 303 2 198 0 0 0 chr13 90171649 90171671 -11701498 + (CAA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr13 90171786 90171807 -11701362 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr13 90172102 90172134 -11701035 + AT_rich Low_complexity Low_complexity 1 32 0 575 308 62 21 chr13 90173045 90173270 -11699899 + MIR SINE MIR 29 260 -2 22 0 0 0 chr13 90175014 90175036 -11698133 + AT_rich Low_complexity Low_complexity 1 22 0 197 375 27 49 chr13 90177549 90177733 -11695436 - MIR3 SINE MIR -13 195 16 181 346 115 0 chr13 90178278 90178382 -11694787 - MIR SINE MIR -61 201 86 410 270 224 0 chr13 90178507 90178659 -11694510 - MER5A DNA MER1_type 0 189 4 5412 20 0 3 chr13 90180054 90180742 -11692427 + L1PA3 LINE L1 5482 6167 0 1226 220 166 17 chr13 90181500 90181909 -11691260 + L1ME3A LINE L1 5548 6017 -153 189 0 0 0 chr13 90181933 90181954 -11691215 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 984 224 0 0 chr13 90182642 90182816 -11690353 - AluJ SINE Alu -30 282 109 680 180 0 0 chr13 90182847 90182958 -11690211 - AluJ SINE Alu -198 114 4 244 290 91 70 chr13 90182992 90183178 -11689991 + MLT1I LTR MaLR 100 289 -120 633 205 137 6 chr13 90183334 90183495 -11689674 + MLT1B LTR MaLR 3 184 -206 678 296 108 32 chr13 90183523 90183583 -11689586 - L1MEc LINE L1 -3898 2498 2444 2082 118 64 12 chr13 90183583 90183929 -11689240 - THE1B LTR MaLR 0 364 1 678 296 108 32 chr13 90183929 90184304 -11688865 - L1MEc LINE L1 -3952 2444 2030 390 307 69 41 chr13 90184445 90185195 -11687974 - L1MEc LINE L1 -4439 1776 1027 1348 144 0 0 chr13 90186453 90186648 -11686521 + AluSg/x SINE Alu 108 302 -10 21 0 0 0 chr13 90187074 90187095 -11686074 + AT_rich Low_complexity Low_complexity 1 21 0 2452 81 35 6 chr13 90187730 90188078 -11685091 - THE1B LTR MaLR -5 359 2 2898 179 26 5 chr13 90188698 90189278 -11683891 + L1MB2 LINE L1 5577 6168 -3 256 211 70 0 chr13 90189719 90189776 -11683393 + L3 LINE CR1 1513 1573 -4 22 0 0 0 chr13 90190929 90190951 -11682218 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 90190987 90191008 -11682161 + AT_rich Low_complexity Low_complexity 1 21 0 530 316 52 5 chr13 90191045 90191238 -11681931 + MIR SINE MIR 30 231 -31 199 260 182 0 chr13 90191596 90191673 -11681496 + L2 LINE L2 3223 3313 0 569 194 16 0 chr13 90191770 90191899 -11681270 - MER53 DNA DNA 0 189 59 530 164 75 20 chr13 90191895 90192041 -11681128 - MER53 DNA DNA -35 154 1 * 221 210 16 0 chr13 90192623 90192685 -11680484 + CT-rich Low_complexity Low_complexity 2 64 0 197 33 33 0 chr13 90193393 90193423 -11679746 + (TC)n Simple_repeat Simple_repeat 2 32 0 221 293 0 61 chr13 90193595 90193677 -11679492 - L2 LINE L2 0 3272 3196 220 283 135 59 chr13 90193981 90194285 -11678884 - L2 LINE L2 -435 2879 2553 446 244 45 70 chr13 90195065 90195221 -11677948 - MIR SINE MIR -54 208 57 37 32 0 16 chr13 90195429 90195470 -11677699 + AT_rich Low_complexity Low_complexity 1 42 -19 665 216 0 0 chr13 90195470 90195595 -11677574 - FLAM_C SINE Alu -6 127 3 37 32 0 16 chr13 90195595 90195615 -11677554 + AT_rich Low_complexity Low_complexity 42 61 0 21 36 0 0 chr13 90196580 90196608 -11676561 + AT_rich Low_complexity Low_complexity 1 28 0 302 270 22 22 chr13 90197064 90197153 -11676016 - MIR SINE MIR -10 252 164 2331 217 88 0 chr13 90197541 90198062 -11675107 + MLT1F1 LTR MaLR 1 567 0 887 249 13 13 chr13 90198874 90199099 -11674070 + MIR SINE MIR 35 259 -3 236 298 64 32 chr13 90199733 90199827 -11673342 - L2 LINE L2 -8 3264 3168 1796 160 16 47 chr13 90199943 90200262 -11672907 + AluSx SINE Alu 1 309 -3 559 306 91 0 chr13 90200314 90200533 -11672636 + L1ME2 LINE L1 325 563 -6044 759 159 9 0 chr13 90200534 90200647 -11672522 + FRAM SINE Alu 35 148 -28 351 0 0 0 chr13 90200648 90200687 -11672482 + (CA)n Simple_repeat Simple_repeat 2 40 0 226 219 14 41 chr13 90200736 90200809 -11672360 - L1M4 LINE L1 -2271 3875 3805 1125 221 88 53 chr13 90200850 90201229 -11671940 + L1M4 LINE L1 3881 4282 -1864 1749 60 14 0 chr13 90201229 90201446 -11671723 - AluY SINE Alu -6 305 86 1125 221 88 53 chr13 90201446 90201555 -11671614 + L1M4 LINE L1 4282 4386 -1760 265 275 43 7 chr13 90201557 90201695 -11671474 + L1ME2 LINE L1 1426 1568 -4858 691 201 54 50 chr13 90201791 90201842 -11671327 + L1ME2 LINE L1 4670 4719 -1707 1857 206 8 3 chr13 90201842 90202202 -11670967 + MLT1A1 LTR MaLR 3 364 -1 691 201 54 50 chr13 90202202 90202428 -11670741 + L1ME2 LINE L1 4719 4948 -1478 723 220 75 0 chr13 90202434 90202620 -11670549 - MER3 DNA MER1_type -6 203 4 1631 150 57 71 chr13 90202690 90203056 -11670113 - THE1B LTR MaLR 0 364 4 11227 103 13 1 chr13 90203059 90204621 -11668548 - THE1B-int LTR MaLR 0 1580 1 1842 138 55 32 chr13 90204621 90204968 -11668201 - THE1B LTR MaLR 0 364 10 1976 260 82 22 chr13 90205005 90206350 -11666819 + L1ME2 LINE L1 5040 6614 0 542 286 34 6 chr13 90206567 90206745 -11666424 - MIR SINE MIR -10 252 70 842 203 46 110 chr13 90207505 90207895 -11665274 + MLT1B LTR MaLR 11 375 -15 261 297 41 55 chr13 90207991 90208136 -11665033 - MIR SINE MIR -14 248 106 375 352 42 21 chr13 90210244 90210386 -11662783 + L2 LINE L2 3128 3272 0 2200 120 16 44 chr13 90210908 90211292 -11661877 - THE1C LTR MaLR 0 375 3 861 159 0 0 chr13 90211517 90211649 -11661520 - FLAM_C SINE Alu -1 132 1 203 292 22 11 chr13 90211924 90212013 -11661156 + CT-rich Low_complexity Low_complexity 4 93 0 281 125 21 0 chr13 90213733 90213781 -11659388 - MLT1D LTR MaLR 0 505 457 2547 58 0 3 chr13 90213804 90214114 -11659055 + AluY SINE Alu 1 309 -2 2046 127 3 0 chr13 90214118 90214410 -11658759 + AluY SINE Alu 1 293 -18 481 0 0 0 chr13 90214410 90214468 -11658701 - L1P2 LINE L1 -687 5468 5411 186 71 0 0 chr13 90214471 90214499 -11658670 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1944 207 61 62 chr13 90214519 90215146 -11658023 - MER92B LTR ERV1 -10 626 1 1132 211 108 55 chr13 90215146 90215581 -11657588 - MLT1D LTR MaLR -45 460 3 2577 178 90 63 chr13 90215680 90215888 -11657281 - Charlie1a DNA MER1_type -1306 1455 1254 728 176 8 0 chr13 90215888 90216007 -11657162 + FLAM_A SINE Alu 2 121 -12 2577 178 90 63 chr13 90216007 90216215 -11656954 - Charlie1a DNA MER1_type -1507 1254 1053 2251 113 3 0 chr13 90216215 90216516 -11656653 - AluSp SINE Alu -11 302 1 2577 178 90 63 chr13 90216516 90216928 -11656241 - Charlie1a DNA MER1_type -1708 1053 603 1352 211 59 71 chr13 90216926 90217432 -11655737 + Charlie1a DNA MER1_type 103 602 -853 * 394 273 16 25 chr13 90217427 90217548 -11655621 - Charlie1a DNA MER1_type -1335 120 1 * 238 297 174 0 chr13 90217861 90217999 -11655170 + MIR SINE MIR 86 247 -15 244 167 19 0 chr13 90218626 90218680 -11654489 - Alu SINE Alu -1 301 247 2311 71 20 7 chr13 90218961 90219255 -11653914 + AluSq SINE Alu 1 298 -15 214 183 133 33 chr13 90222424 90222484 -11650685 + MER5B DNA MER1_type 106 171 -7 1022 284 142 2 chr13 90222806 90223243 -11649926 + MLT1J LTR MaLR 3 500 -11 2593 50 0 0 chr13 90223877 90224180 -11648989 + AluY SINE Alu 1 303 -8 297 75 0 0 chr13 90225924 90225964 -11647205 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1414 216 47 20 chr13 90225964 90226261 -11646908 - AluJo SINE Alu -7 305 1 4453 156 10 8 chr13 90226569 90227400 -11645769 - L1MA4 LINE L1 -211 6089 5258 25 75 0 0 chr13 90227574 90227627 -11645542 + AT_rich Low_complexity Low_complexity 1 53 0 303 350 0 48 chr13 90227916 90228102 -11645067 - L1M4 LINE L1 -1797 4349 4173 11485 30 12 0 chr13 90228571 90230733 -11642436 - L1PA4 LINE L1 0 6155 3979 34 0 0 0 chr13 90231057 90231091 -11642078 + AT_rich Low_complexity Low_complexity 1 34 0 767 219 0 0 chr13 90231210 90231379 -11641790 + FRAM SINE Alu 1 169 0 24 0 0 0 chr13 90231380 90231404 -11641765 + AT_rich Low_complexity Low_complexity 1 24 0 181 245 0 20 chr13 90232288 90232337 -11640832 + L2 LINE L2 3257 3304 -9 540 326 30 13 chr13 90232357 90232593 -11640576 + MIR SINE MIR 23 262 0 1170 131 0 0 chr13 90232943 90233103 -11640066 + AluJb SINE Alu 131 290 -22 325 345 64 30 chr13 90233211 90233541 -11639628 - HAL1b LINE L1 -680 668 328 2262 197 61 24 chr13 90234458 90234997 -11638172 + MER89 LTR ERV1 1 559 0 2350 95 0 0 chr13 90235199 90235503 -11637666 + AluSx SINE Alu 1 304 -8 254 329 35 0 chr13 90235956 90236041 -11637128 + MIR SINE MIR 64 151 -111 670 279 28 0 chr13 90236099 90236278 -11636891 - MIR SINE MIR -61 201 18 271 327 29 0 chr13 90237754 90237858 -11635311 + MIR SINE MIR 123 229 -33 634 280 47 19 chr13 90238629 90238843 -11634326 - MIR SINE MIR -11 251 32 22 35 0 0 chr13 90239865 90239894 -11633275 + AT_rich Low_complexity Low_complexity 1 29 0 437 132 0 0 chr13 90239971 90240039 -11633130 + MLT2B3 LTR ERVL 1 68 -486 21 0 0 0 chr13 90240043 90240064 -11633105 + AT_rich Low_complexity Low_complexity 1 21 0 1706 190 57 71 chr13 90240161 90240639 -11632530 + MLT2B3 LTR ERVL 77 547 -7 467 254 51 14 chr13 90240643 90240781 -11632388 - MIR SINE MIR -97 165 23 538 263 76 52 chr13 90241283 90241534 -11631635 + Charlie8 DNA MER1_type 1 257 -2160 301 361 8 8 chr13 90241754 90241876 -11631293 + MIR SINE MIR 20 141 -121 950 201 18 5 chr13 90242037 90242261 -11630908 - L1MC4 LINE L1 -644 7398 7172 887 246 70 114 chr13 90242633 90243158 -11630011 + L2 LINE L2 2812 3313 0 2304 102 0 0 chr13 90243322 90243617 -11629552 - AluSc SINE Alu -14 295 1 24 32 0 0 chr13 90245496 90245527 -11627642 + AT_rich Low_complexity Low_complexity 1 31 0 1423 115 43 0 chr13 90245527 90245780 -11627389 + L1MA9 LINE L1 6048 6311 -1 239 298 99 8 chr13 90246442 90246563 -11626606 - MIR SINE MIR -62 200 69 272 291 89 73 chr13 90246743 90246922 -11626247 - L2 LINE L2 -7 3306 3125 23 0 0 0 chr13 90248128 90248151 -11625018 + AT_rich Low_complexity Low_complexity 1 23 0 3337 41 0 7 chr13 90248170 90248582 -11624587 - L1PA3 LINE L1 0 6155 5747 1048 284 96 40 chr13 90248739 90249674 -11623495 - L2 LINE L2 -2 3311 2304 723 278 125 60 chr13 90249663 90250091 -11623078 - L2 LINE L2 -1193 2121 1630 * 3402 180 26 13 chr13 90250091 90250790 -11622379 + L1PB4 LINE L1 5443 6150 -6 723 278 125 60 chr13 90250790 90251047 -11622122 - L2 LINE L2 -1684 1630 1391 240 331 59 78 chr13 90251655 90252093 -11621076 + L2 LINE L2 2045 2474 -840 970 307 95 30 chr13 90253001 90253506 -11619663 + L3 LINE CR1 948 1485 -92 203 374 91 13 chr13 90253539 90253769 -11619400 + L3b LINE CR1 1279 1526 -57 217 169 0 68 chr13 90255198 90255257 -11617912 + MIR SINE MIR 158 212 -50 206 288 0 38 chr13 90255397 90255433 -11617736 + CT-rich Low_complexity Low_complexity 1 37 -40 1566 145 0 0 chr13 90255433 90255660 -11617509 - AluJb SINE Alu -3 309 83 206 288 0 38 chr13 90255660 90255703 -11617466 + CT-rich Low_complexity Low_complexity 37 77 0 1370 228 33 17 chr13 90256139 90256498 -11616671 - MLT1A1 LTR MaLR 0 365 1 1866 158 24 12 chr13 90257216 90257557 -11615612 - L1MC1 LINE L1 0 6333 5989 360 326 52 14 chr13 90258785 90258992 -11614177 - MIR SINE MIR -48 214 6 617 299 182 32 chr13 90260725 90261127 -11612042 + L2 LINE L2 2841 3302 -11 375 23 0 0 chr13 90261502 90261546 -11611623 + (TG)n Simple_repeat Simple_repeat 1 44 0 2107 107 7 3 chr13 90262311 90262609 -11610560 + AluSx SINE Alu 1 299 -13 26 0 0 0 chr13 90263387 90263413 -11609756 + AT_rich Low_complexity Low_complexity 1 26 0 376 294 97 36 chr13 90265143 90265422 -11607747 - L1M4 LINE L1 -1273 4873 4578 22 0 0 0 chr13 90265467 90265489 -11607680 + AT_rich Low_complexity Low_complexity 1 22 0 667 245 77 5 chr13 90266110 90266306 -11606863 - MER20 DNA MER1_type -4 215 6 1827 214 16 23 chr13 90268035 90268474 -11604695 - MER63B DNA MER1_type 0 436 1 230 97 0 0 chr13 90268854 90268885 -11604284 - U2 snRNA snRNA -157 31 1 888 189 34 6 chr13 90269318 90269493 -11603676 - MER5A DNA MER1_type -3 186 7 466 258 30 8 chr13 90269823 90269955 -11603214 + MER5B DNA MER1_type 1 135 -43 385 267 0 84 chr13 90269968 90270099 -11603070 - MER5B DNA MER1_type -58 120 1 290 245 75 57 chr13 90270099 90270202 -11602967 + L2 LINE L2 3189 3293 -20 231 209 176 33 chr13 90270496 90270587 -11602582 + MER58B DNA MER1_type 110 213 -128 744 197 14 0 chr13 90270615 90270757 -11602412 + MER58B DNA MER1_type 198 341 0 2264 171 93 17 chr13 90271657 90272131 -11601038 + MER67D LTR ERV1 1 510 -4 742 228 61 83 chr13 90272146 90272541 -11600628 + MLT1B LTR MaLR 1 386 -4 264 337 22 43 chr13 90272653 90272837 -11600332 + L2 LINE L2 2915 3094 -178 2234 134 40 3 chr13 90272925 90273276 -11599893 - THE1B LTR MaLR 0 364 1 2129 60 7 18 chr13 90273721 90274049 -11599120 + AluY SINE Alu 1 325 0 1760 108 13 0 chr13 90275814 90276046 -11597123 - AluSq SINE Alu -13 300 66 223 267 0 0 chr13 90276188 90276233 -11596936 + (CATA)n Simple_repeat Simple_repeat 3 47 0 257 322 7 41 chr13 90276446 90276592 -11596577 + LTR33 LTR ERVL 38 178 -343 790 204 0 5 chr13 90276971 90277157 -11596012 - L1MA4 LINE L1 -3 6297 6113 1944 123 3 7 chr13 90277965 90278284 -11594885 - AluSx SINE Alu 0 318 1 1477 34 0 0 chr13 90278319 90278495 -11594674 + AluY SINE Alu 136 311 0 242 149 43 0 chr13 90278980 90279027 -11594142 - MER67D LTR ERV1 0 514 466 4106 145 81 9 chr13 90279028 90279690 -11593479 - L1PA16 LINE L1 -3 6163 5431 1772 164 35 32 chr13 90279690 90280063 -11593106 + THE1C LTR MaLR 1 374 -1 4106 145 81 9 chr13 90280063 90280206 -11592963 - L1PA16 LINE L1 -735 5431 5300 1754 217 35 33 chr13 90280236 90280761 -11592408 - L1 LINE L1 -820 5326 4797 2199 108 0 3 chr13 90280761 90281070 -11592099 - AluSq SINE Alu 0 308 1 1754 217 35 33 chr13 90281070 90281120 -11592049 - L1 LINE L1 -1349 4797 4749 1826 187 59 26 chr13 90281147 90281569 -11591600 - MER67D LTR ERV1 -78 436 1 337 295 158 0 chr13 90281792 90281887 -11591282 + L2 LINE L2 3152 3261 -11 481 271 84 42 chr13 90281968 90282182 -11590987 + MIR SINE MIR 10 232 -30 291 308 48 102 chr13 90283600 90283915 -11589254 + L2 LINE L2 2883 3180 -92 297 280 16 16 chr13 90283994 90284119 -11589050 + MLT1J2 LTR MaLR 42 166 -284 326 313 9 9 chr13 90284370 90284482 -11588687 + L2 LINE L2 3202 3313 0 398 276 210 22 chr13 90284905 90285086 -11588083 - MIR SINE MIR -11 251 37 246 341 16 16 chr13 90285745 90285868 -11587301 - MIR SINE MIR -119 143 21 231 340 183 0 chr13 90286912 90287065 -11586104 - MER5A DNA MER1_type -2 187 7 870 200 27 5 chr13 90287079 90287264 -11585905 - MER5A DNA MER1_type 0 189 1 4182 82 20 20 chr13 90287575 90288181 -11584988 - L1PA8 LINE L1 0 6172 5567 21 0 0 0 chr13 90289566 90289587 -11583582 + AT_rich Low_complexity Low_complexity 1 21 0 317 323 25 122 chr13 90290392 90290711 -11582458 - L2 LINE L2 -2 3270 2983 32 0 0 0 chr13 90290978 90291010 -11582159 + AT_rich Low_complexity Low_complexity 1 32 0 225 342 113 9 chr13 90292673 90292895 -11580274 + L2 LINE L2 2577 2821 -493 224 314 66 91 chr13 90293013 90293332 -11579837 + L2 LINE L2 2945 3255 -17 25 0 0 0 chr13 90293332 90293357 -11579812 + AT_rich Low_complexity Low_complexity 1 25 0 204 239 30 45 chr13 90293998 90294065 -11579104 + (TTGGGG)n Simple_repeat Simple_repeat 1 66 0 311 284 0 0 chr13 90295188 90295269 -11577900 + (TG)n Simple_repeat Simple_repeat 2 82 0 2532 125 25 37 chr13 90297871 90298304 -11574865 + MSTA LTR MaLR 1 428 0 192 300 214 19 chr13 90303190 90303400 -11569769 + L3 LINE CR1 1303 1553 -24 24 0 0 0 chr13 90303855 90303879 -11569290 + AT_rich Low_complexity Low_complexity 1 24 0 180 196 161 18 chr13 90305529 90305585 -11567584 + MIR SINE MIR 79 142 -120 495 261 86 19 chr13 90305863 90306042 -11567127 - MIR SINE MIR -40 222 34 231 36 0 0 chr13 90306094 90306122 -11567047 + (CA)n Simple_repeat Simple_repeat 1 28 0 321 276 23 0 chr13 90306328 90306415 -11566754 + L2 LINE L2 3221 3309 -4 836 191 186 62 chr13 90308078 90308450 -11564719 + LTR37A LTR ERV1 6 423 -3 397 182 8 107 chr13 90308932 90309053 -11564116 - MLT1E2 LTR MaLR -517 109 1 267 392 6 33 chr13 90309527 90309708 -11563461 + L2 LINE L2 2603 2778 -536 482 230 13 53 chr13 90309984 90310136 -11563033 - MER61D LTR ERV1 -12 489 344 839 171 11 185 chr13 90310148 90310435 -11562734 - LTR28 LTR ERV1 -840 180 1 336 248 133 0 chr13 90310760 90310873 -11562296 - MIR SINE MIR -66 196 69 1773 216 37 55 chr13 90311004 90311518 -11561651 - MLT1D LTR MaLR 0 505 1 319 302 19 0 chr13 90314441 90314547 -11558622 + CT-rich Low_complexity Low_complexity 1 108 0 225 364 76 8 chr13 90314635 90314767 -11558402 - L3 LINE CR1 -41 1536 1396 204 40 0 0 chr13 90315300 90315325 -11557844 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 344 284 162 34 chr13 90316410 90316614 -11556555 - MIR SINE MIR -17 245 16 539 250 45 11 chr13 90316632 90316808 -11556361 + Charlie4 DNA MER1_type 17 198 -1763 298 175 0 68 chr13 90317033 90317136 -11556033 + T-rich Low_complexity Low_complexity 6 101 0 214 325 26 26 chr13 90317809 90317845 -11555324 - L2 LINE L2 -1 3271 3236 2456 53 3 0 chr13 90317845 90318146 -11555023 - AluY SINE Alu -9 302 1 214 325 26 26 chr13 90318146 90318186 -11554983 - L2 LINE L2 -35 3237 3195 21 0 0 0 chr13 90318232 90318253 -11554916 + AT_rich Low_complexity Low_complexity 1 21 0 572 241 12 47 chr13 90318636 90318808 -11554361 + MIR3 SINE MIR 42 207 -1 1563 185 6 46 chr13 90319991 90320316 -11552853 - AluJo SINE Alu 0 312 1 437 255 234 0 chr13 90322100 90322241 -11550928 - MER5A DNA MER1_type 0 189 16 1394 146 23 0 chr13 90322330 90322549 -11550620 + AluSg/x SINE Alu 84 307 -5 258 283 0 0 chr13 90322985 90323045 -11550124 - tRNA-Ile-ATT tRNA tRNA -12 65 6 671 239 48 21 chr13 90324213 90324401 -11548768 - MER20 DNA MER1_type -1 218 26 373 237 70 37 chr13 90324624 90324826 -11548343 - L1ME LINE L1 -662 5502 5299 246 230 33 14 chr13 90325348 90325463 -11547706 + L1ME3A LINE L1 5829 5948 -222 330 305 0 0 chr13 90326453 90326535 -11546634 + L2 LINE L2 3230 3311 -2 180 0 0 0 chr13 90326535 90326555 -11546614 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 191 399 45 15 chr13 90326915 90327048 -11546121 + L2 LINE L2 2222 2358 -956 262 304 139 38 chr13 90330911 90331148 -11542021 + L2 LINE L2 2150 2410 -904 24 77 0 0 chr13 90331621 90331673 -11541496 + AT_rich Low_complexity Low_complexity 1 52 0 255 308 135 15 chr13 90331705 90331838 -11541331 - MIR3 SINE MIR -47 161 13 287 349 41 15 chr13 90332184 90332379 -11540790 - L2 LINE L2 -372 2942 2743 421 131 60 12 chr13 90332379 90332463 -11540706 - LTR1 LTR ERV1 -198 587 500 190 274 32 42 chr13 90332475 90332570 -11540599 - L2 LINE L2 -594 2720 2627 7252 184 53 10 chr13 90332576 90333998 -11539171 - HUERS-P2 LTR ERV1 -1385 1703 220 426 252 16 24 chr13 90334033 90334160 -11539009 - HUERS-P2 LTR ERV1 -2962 126 1 3893 149 50 60 chr13 90334160 90334953 -11538216 - LTR1 LTR ERV1 0 785 1 503 91 78 0 chr13 90334953 90335030 -11538139 - LTR8 LTR ERV1 -608 83 1 221 239 56 28 chr13 90335037 90335108 -11538061 - L2 LINE L2 -978 2336 2264 198 333 128 28 chr13 90335247 90335324 -11537845 - L2 LINE L2 -1152 2162 2094 2110 103 7 7 chr13 90335324 90335616 -11537553 + AluSx SINE Alu 2 293 -19 198 333 128 28 chr13 90335616 90335679 -11537490 - L2 LINE L2 -1220 2094 2008 1716 143 4 18 chr13 90336345 90336624 -11536545 + AluSx SINE Alu 6 280 -32 216 117 83 17 chr13 90336794 90336854 -11536315 + T-rich Low_complexity Low_complexity 2 65 0 224 309 150 34 chr13 90337021 90337228 -11535941 - L2 LINE L2 -68 3245 3015 1609 273 97 9 chr13 90338868 90339414 -11533755 + L2 LINE L2 1856 2449 -865 261 237 0 6 chr13 90339445 90339520 -11533649 - MLT1A1 LTR MaLR -12 375 294 1494 157 27 10 chr13 90339534 90339834 -11533335 - L1MA4 LINE L1 -24 6276 5972 210 37 0 0 chr13 90340009 90340036 -11533133 + (TA)n Simple_repeat Simple_repeat 1 27 0 255 275 30 102 chr13 90340043 90340074 -11533095 + MER58C DNA MER1_type 57 89 -2331 1927 105 0 51 chr13 90340074 90340252 -11532917 - AluSg SINE Alu -12 298 141 2455 72 7 3 chr13 90340252 90340558 -11532611 - AluY SINE Alu -4 307 1 1927 105 0 51 chr13 90340558 90340693 -11532476 - AluSg SINE Alu -169 141 1 255 275 30 102 chr13 90340693 90340740 -11532429 + MER58C DNA MER1_type 89 138 -2282 414 39 0 0 chr13 90340740 90340792 -11532377 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 275 30 102 chr13 90340792 90340879 -11532290 + MER58C DNA MER1_type 138 211 -4 1856 127 3 107 chr13 90340969 90341316 -11531853 - AluSq SINE Alu -1 312 2 184 349 0 0 chr13 90341684 90341747 -11531422 - L2 LINE L2 0 3272 3210 * 224 217 0 0 chr13 90341702 90341748 -11531421 - MIR SINE MIR -12 250 205 1169 163 88 4 chr13 90343358 90343609 -11529560 - Tigger7 DNA MER2_type -6 2581 2310 799 264 45 18 chr13 90343756 90344089 -11529080 + MER41E LTR ERV1 166 507 -5 341 158 158 0 chr13 90344094 90344176 -11528993 - Tigger7 DNA MER2_type -273 2214 2120 3474 199 42 4 chr13 90344176 90344919 -11528250 - Tigger7 DNA MER2_type -1715 772 2 382 119 15 0 chr13 90345476 90345543 -11527626 + Tigger7 DNA MER2_type 2302 2369 -218 436 286 63 39 chr13 90346983 90347189 -11525980 - L2 LINE L2 -4 3309 3099 186 404 59 0 chr13 90347214 90347350 -11525819 - L2 LINE L2 -1675 1639 1496 571 219 42 13 chr13 90347443 90347641 -11525528 + MIR SINE MIR 2 262 0 376 179 217 0 chr13 90348086 90348192 -11524977 + MER34 LTR ERV1 382 510 -32 457 184 82 107 chr13 90348836 90349042 -11524127 + MER65A-int LTR ERV1 1528 1728 -4603 675 233 19 39 chr13 90349165 90349423 -11523746 + MER65A-int LTR ERV1 1859 2111 -2760 335 229 110 0 chr13 90349559 90349668 -11523501 + MER65A-int LTR ERV1 3268 3388 -1483 933 272 42 20 chr13 90349704 90349852 -11523317 + MER65A-int LTR ERV1 4125 4268 -603 2107 106 20 14 chr13 90349852 90350145 -11523024 + AluSg SINE Alu 12 306 -4 933 272 42 20 chr13 90350145 90350681 -11522488 + MER65A-int LTR ERV1 4268 4819 -52 1391 211 24 50 chr13 90350732 90351149 -11522020 + MER65A LTR ERV1 7 412 -33 21 0 0 0 chr13 90351149 90351170 -11521999 + AT_rich Low_complexity Low_complexity 1 21 0 1080 302 85 18 chr13 90351183 90351793 -11521376 - L1MC4 LINE L1 0 8042 7392 426 136 0 0 chr13 90352258 90352324 -11520845 + THE1B LTR MaLR 299 364 0 11383 109 5 0 chr13 90352324 90353897 -11519272 + THE1B-int LTR MaLR 1 1580 0 783 120 8 0 chr13 90353897 90354014 -11519155 + THE1B LTR MaLR 1 118 -246 252 299 41 10 chr13 90354012 90354109 -11519060 + MLT1C LTR MaLR 368 467 0 * 413 248 48 55 chr13 90354323 90354468 -11518701 - MIR SINE MIR -88 174 31 598 155 0 0 chr13 90354475 90354572 -11518597 + MLT2B3 LTR ERVL 1 97 -418 1459 271 7 39 chr13 90354675 90355089 -11518080 + MLT2B3 LTR ERVL 154 554 0 245 302 32 0 chr13 90356155 90356218 -11516951 - L3b LINE CR1 -2 1581 1517 370 259 17 0 chr13 90358214 90358330 -11514839 + L1ME4a LINE L1 5612 5729 -392 268 229 86 21 chr13 90358435 90358575 -11514594 + L1ME4a LINE L1 5778 5926 -195 233 128 0 0 chr13 90358720 90358759 -11514410 - L2 LINE L2 -4 3309 3271 22 35 0 0 chr13 90359493 90359522 -11513647 + AT_rich Low_complexity Low_complexity 1 29 0 233 91 45 0 chr13 90360089 90360133 -11513036 + (CCCA)n Simple_repeat Simple_repeat 3 48 0 1798 115 0 0 chr13 90361277 90361546 -11511623 - L1PA14 LINE L1 -5 6156 5888 273 275 148 13 chr13 90361939 90362088 -11511081 - MLT1H LTR MaLR -258 291 123 22 0 0 0 chr13 90363067 90363089 -11510080 + AT_rich Low_complexity Low_complexity 1 22 0 231 271 0 0 chr13 90363325 90363395 -11509774 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 1487 171 188 3 chr13 90363424 90363775 -11509394 - MLT2C2 LTR ERVL -48 416 1 333 292 85 15 chr13 90364165 90364295 -11508874 - MIR SINE MIR -28 234 96 324 333 100 0 chr13 90364751 90364871 -11508298 - MIR3 SINE MIR -1 207 76 202 388 0 0 chr13 90366883 90366963 -11506206 + MIR SINE MIR 71 150 -112 1088 174 52 0 chr13 90367054 90367284 -11505885 + L1MA4 LINE L1 6050 6291 -9 231 260 0 0 chr13 90368049 90368099 -11505070 - MIR3 SINE MIR -8 200 151 11777 194 44 57 chr13 90368345 90368796 -11504373 - L1MA3 LINE L1 -306 7061 6606 198 0 0 0 chr13 90368796 90368818 -11504351 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 11777 194 44 57 chr13 90368818 90368864 -11504305 - L1MA3 LINE L1 -761 6606 6561 757 103 0 0 chr13 90368864 90368971 -11504198 - L1PB1 LINE L1 -4 6147 6041 11777 194 44 57 chr13 90368971 90368986 -11504183 - L1MA3 LINE L1 -806 6561 6547 1852 121 3 82 chr13 90368986 90369325 -11503844 + AluSc SINE Alu 1 309 0 11777 194 44 57 chr13 90369325 90369862 -11503307 - L1MA3 LINE L1 -820 6547 6005 369 0 0 0 chr13 90369862 90369903 -11503266 + (TG)n Simple_repeat Simple_repeat 2 42 0 11777 194 44 57 chr13 90369903 90374544 -11498625 - L1MA3 LINE L1 -1362 6005 1426 2038 237 104 6 chr13 90374564 90375189 -11497980 - L1MA3 LINE L1 -6432 777 138 1142 215 14 28 chr13 90375191 90375479 -11497690 - MLT1A1 LTR MaLR -68 297 14 441 274 209 68 chr13 90375576 90375916 -11497253 + L2 LINE L2 2579 2966 -348 381 202 48 24 chr13 90375993 90376077 -11497092 - Tigger7 DNA MER2_type -1 2486 2401 280 108 108 14 chr13 90376175 90376249 -11496920 - Tigger7 DNA MER2_type -79 2508 2428 * 391 231 0 0 chr13 90376243 90376321 -11496848 - Tigger7 DNA MER2_type -655 78 1 344 284 34 40 chr13 90376565 90376741 -11496428 + MIR SINE MIR 88 262 0 264 163 0 0 chr13 90376839 90376888 -11496281 - MLT2B1 LTR ERVL 0 520 472 459 0 0 0 chr13 90376889 90376940 -11496229 + (CA)n Simple_repeat Simple_repeat 2 52 0 203 225 14 0 chr13 90376944 90377015 -11496154 + (TA)n Simple_repeat Simple_repeat 1 72 0 1386 219 140 41 chr13 90377047 90377462 -11495707 - MLT2B1 LTR ERVL -64 456 1 317 321 143 18 chr13 90377556 90377669 -11495500 + MIR SINE MIR 25 167 -95 195 100 0 0 chr13 90377669 90377699 -11495470 + (ATG)n Simple_repeat Simple_repeat 2 31 0 317 321 143 18 chr13 90377699 90377753 -11495416 + MIR SINE MIR 167 213 -49 318 26 0 0 chr13 90377889 90377928 -11495241 + (GA)n Simple_repeat Simple_repeat 2 40 0 2495 111 5 19 chr13 90378234 90378603 -11494566 + THE1B LTR MaLR 1 364 0 11239 113 10 1 chr13 90378607 90380168 -11493001 + THE1B-int LTR MaLR 5 1579 -1 2386 125 8 16 chr13 90380169 90380536 -11492633 + THE1B LTR MaLR 1 364 0 5117 175 41 72 chr13 90381132 90382315 -11490854 + L1MB1 LINE L1 3898 5116 -1073 1241 196 28 102 chr13 90382315 90382707 -11490462 + MLT1A1 LTR MaLR 1 363 -2 5117 175 41 72 chr13 90382707 90383158 -11490011 + L1MB1 LINE L1 5116 5579 -610 1712 185 10 7 chr13 90383158 90383461 -11489708 + AluJo SINE Alu 1 304 -8 5117 175 41 72 chr13 90383461 90384282 -11488887 + L1MB1 LINE L1 5579 6161 -28 391 304 134 36 chr13 90384445 90384669 -11488500 + L2 LINE L2 3055 3300 -13 204 246 148 0 chr13 90385708 90385769 -11487400 - MIR SINE MIR -26 236 167 283 258 19 77 chr13 90385769 90385924 -11487245 + MLT2F LTR ERVL 1 146 -517 493 175 64 29 chr13 90385925 90386096 -11487073 + MLT1E3 LTR MaLR 50 274 -380 253 341 51 22 chr13 90386332 90386470 -11486699 - MIR SINE MIR -90 172 31 307 270 130 0 chr13 90386521 90386621 -11486548 + L2 LINE L2 3160 3272 0 389 295 0 0 chr13 90387185 90387280 -11485889 + L2 LINE L2 3207 3301 -12 217 220 0 20 chr13 90388536 90388586 -11484583 + MIR SINE MIR 95 143 -119 2354 187 8 44 chr13 90389136 90389634 -11483535 + MER66B LTR ERV1 5 484 -2 250 321 9 64 chr13 90390317 90390426 -11482743 + MIR SINE MIR 47 149 -113 2006 73 0 0 chr13 90390902 90391163 -11482006 + L1PA5 LINE L1 5894 6154 0 867 211 173 16 chr13 90391231 90391606 -11481563 + Charlie4a DNA MER1_type 43 476 -32 705 243 6 0 chr13 90394309 90394486 -11478683 + MER3 DNA MER1_type 2 179 -30 432 241 91 53 chr13 90395485 90395826 -11477343 + HAL1 LINE L1 958 1311 -1196 403 136 0 0 chr13 90396619 90396685 -11476484 + L1PA15 LINE L1 6100 6165 0 2514 63 0 0 chr13 90396884 90397185 -11475984 + AluY SINE Alu 1 301 -10 2186 105 0 3 chr13 90397874 90398170 -11474999 - AluY SINE Alu -16 295 1 184 410 8 17 chr13 90398189 90398306 -11474863 - MIR SINE MIR -74 134 19 251 318 0 0 chr13 90398567 90398633 -11474536 + MIR SINE MIR 84 149 -113 778 195 118 15 chr13 90399606 90399801 -11473368 - L2 LINE L2 0 3313 3099 632 175 18 0 chr13 90399804 90399918 -11473251 - MLT1B LTR MaLR -3 387 272 4731 151 64 18 chr13 90399930 90401328 -11471841 + L1MA6 LINE L1 4844 6296 -4 413 291 158 23 chr13 90401342 90401607 -11471562 - MLT1C LTR MaLR -99 368 68 198 379 132 6 chr13 90401870 90402044 -11471125 - L2 LINE L2 -314 2999 2804 204 167 0 42 chr13 90404144 90404192 -11468977 + A-rich Low_complexity Low_complexity 2 47 0 438 36 0 0 chr13 90404580 90404636 -11468533 + (CA)n Simple_repeat Simple_repeat 2 57 0 2753 3 0 0 chr13 90405456 90405752 -11467417 + AluYa5 SINE Alu 1 296 -15 242 333 74 37 chr13 90405793 90405928 -11467241 + MIR SINE MIR 10 149 -113 183 243 0 0 chr13 90405989 90406026 -11467143 + L2 LINE L2 3262 3298 -15 1981 166 42 16 chr13 90406592 90407021 -11466148 - L1MA8 LINE L1 -5 6286 5847 243 343 29 0 chr13 90407039 90407141 -11466028 - MIR SINE MIR -55 207 103 1999 112 45 0 chr13 90407144 90407431 -11465738 + AluSg SINE Alu 1 300 -10 730 227 11 23 chr13 90407691 90407867 -11465302 + MER20 DNA MER1_type 46 219 0 180 77 0 0 chr13 90407983 90408009 -11465160 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 255 329 27 74 chr13 90409321 90409470 -11463699 - L2 LINE L2 -1 3312 3171 206 212 15 30 chr13 90411434 90411500 -11461669 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 1850 133 59 96 chr13 90412549 90412954 -11460215 + MLT1B LTR MaLR 1 390 0 203 189 0 0 chr13 90413191 90413228 -11459941 + (TAA)n Simple_repeat Simple_repeat 2 38 0 207 69 0 0 chr13 90413329 90413358 -11459811 + (TCTA)n Simple_repeat Simple_repeat 4 32 0 2234 157 78 46 chr13 90414278 90414775 -11458394 - MER67D LTR ERV1 0 514 2 547 282 10 14 chr13 90415301 90415512 -11457657 + MIR SINE MIR 54 261 -1 281 321 92 8 chr13 90418019 90418150 -11455019 + L2 LINE L2 3172 3313 0 427 271 172 44 chr13 90418274 90418750 -11454419 - L1MC4a LINE L1 -1739 6069 5533 272 232 53 32 chr13 90418989 90419084 -11454085 + MIR SINE MIR 101 197 -65 418 326 98 21 chr13 90419537 90419730 -11453439 - MIR SINE MIR -35 227 20 595 248 244 8 chr13 90419818 90420060 -11453109 - MLT1I LTR MaLR -18 391 93 1717 322 76 17 chr13 90420199 90420948 -11452221 + L2 LINE L2 2025 2817 -497 1631 218 69 40 chr13 90420952 90420990 -11452179 + MLT1C LTR MaLR 6 41 -426 2427 66 0 7 chr13 90420990 90421295 -11451874 + AluY SINE Alu 1 303 -8 1631 218 69 40 chr13 90421295 90421705 -11451464 + MLT1C LTR MaLR 41 467 0 2060 130 7 3 chr13 90422145 90422452 -11450717 + AluSx SINE Alu 2 309 -3 1087 172 26 10 chr13 90423074 90423266 -11449903 - AluJo SINE Alu -24 288 94 2596 0 0 7 chr13 90423617 90423928 -11449241 - AluYa5 SINE Alu 0 309 1 249 308 17 26 chr13 90424268 90424385 -11448784 - MIR SINE MIR -87 175 60 5054 166 22 20 chr13 90425486 90426744 -11446425 + L1MA10 LINE L1 4959 6218 -116 * 6459 161 19 18 chr13 90426737 90428671 -11444498 - L1MA8 LINE L1 -267 6024 4089 572 160 34 0 chr13 90428685 90428804 -11444365 + L1MA10 LINE L1 6211 6333 -1 183 100 0 0 chr13 90429420 90429450 -11443719 + (ATG)n Simple_repeat Simple_repeat 3 32 0 1485 194 79 25 chr13 90429697 90430053 -11443116 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr13 90434022 90434045 -11439124 + AT_rich Low_complexity Low_complexity 1 23 0 190 326 22 22 chr13 90434341 90434433 -11438736 + MIR SINE MIR 1 92 -170 264 188 0 0 chr13 90435871 90435935 -11437234 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 221 375 33 17 chr13 90435941 90436061 -11437108 - L2 LINE L2 -13 3300 3179 298 333 0 0 chr13 90436126 90436213 -11436956 + MIR SINE MIR 51 137 -125 1996 147 13 0 chr13 90438075 90438374 -11434795 - AluSx SINE Alu -9 303 1 2130 231 15 6 chr13 90439124 90439592 -11433577 - MER70A LTR ERVL 0 472 1 269 260 202 0 chr13 90439673 90439777 -11433392 - L2 LINE L2 0 3313 3189 203 163 20 20 chr13 90443095 90443144 -11430025 - L3b LINE CR1 -229 1354 1306 202 271 0 34 chr13 90443880 90443939 -11429230 + CT-rich Low_complexity Low_complexity 2 58 0 21 0 0 0 chr13 90443957 90443978 -11429191 + AT_rich Low_complexity Low_complexity 1 21 0 458 120 0 53 chr13 90445347 90445422 -11427747 + AluS SINE Alu 1 71 -241 2090 132 62 8 chr13 90445754 90446110 -11427059 - THE1C LTR MaLR 0 375 1 10041 120 21 31 chr13 90446110 90447706 -11425463 - THE1C-int LTR MaLR 0 1580 1 2487 107 27 8 chr13 90447708 90448074 -11425095 - THE1C LTR MaLR -2 373 1 1437 161 102 9 chr13 90449157 90449481 -11423688 - L1MA8 LINE L1 -10 6281 5928 985 179 35 30 chr13 90449805 90450006 -11423163 + MER20 DNA MER1_type 3 204 -15 597 213 41 41 chr13 90450812 90451009 -11422160 + MLT1J1 LTR MaLR 1 197 -249 514 211 51 47 chr13 90451255 90451460 -11421709 + L1ME LINE L1 5452 5658 -463 22 0 0 0 chr13 90452660 90452682 -11420487 + AT_rich Low_complexity Low_complexity 1 22 0 275 288 73 84 chr13 90455038 90455229 -11417940 - MER115 DNA AcHobo -361 332 144 604 345 193 34 chr13 90455632 90457708 -11415461 - L2 LINE L2 -707 2607 201 2159 127 0 0 chr13 90458076 90458375 -11414794 - AluSg SINE Alu -11 299 1 21 0 0 0 chr13 90460398 90460419 -11412750 + AT_rich Low_complexity Low_complexity 1 21 0 519 201 75 29 chr13 90460538 90460712 -11412457 - L1 LINE L1 -3103 3043 2862 * 1213 268 13 3 chr13 90460708 90461022 -11412147 + L1 LINE L1 2528 2844 -3302 8366 202 22 21 chr13 90461033 90463476 -11409693 - L1 LINE L1 -3098 3750 1306 1639 150 30 78 chr13 90463476 90463849 -11409320 - THE1A LTR MaLR 0 355 1 8366 202 22 21 chr13 90463849 90463995 -11409174 - L1 LINE L1 -5542 1306 1162 1846 201 47 9 chr13 90463990 90464333 -11408836 - L1 LINE L1 -6425 424 69 * 208 152 0 0 chr13 90465777 90465810 -11407359 + MIR SINE MIR 220 252 -10 736 256 87 0 chr13 90466072 90466267 -11406902 - MER20 DNA MER1_type -7 212 1 207 385 17 0 chr13 90466433 90466554 -11406615 + MIR SINE MIR 34 155 -69 1009 267 30 24 chr13 90466814 90467151 -11406018 + MARNA DNA Mariner 158 496 -90 4558 298 67 37 chr13 90467279 90468323 -11404846 + L2 LINE L2 1064 2075 -1238 2306 149 36 5 chr13 90468323 90468738 -11404431 + MSTA LTR MaLR 1 428 0 4558 298 67 37 chr13 90468738 90469859 -11403310 + L2 LINE L2 2075 3298 -15 234 269 19 28 chr13 90470813 90470921 -11402248 + (TA)n Simple_repeat Simple_repeat 2 108 0 273 73 0 0 chr13 90471017 90471058 -11402111 - L1MA3 LINE L1 0 6305 6265 198 271 0 42 chr13 90471660 90471708 -11401461 - MER5B DNA MER1_type -70 108 63 229 177 0 32 chr13 90472048 90472110 -11401059 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 277 240 216 8 chr13 90472421 90472546 -11400623 - MLT1G1 LTR MaLR -153 389 239 4532 56 31 3 chr13 90472792 90473381 -11399788 + L1PA5 LINE L1 5547 6151 -3 321 256 117 0 chr13 90473488 90473625 -11399544 - MLT1G1 LTR MaLR -416 179 15 1479 241 16 3 chr13 90474565 90474880 -11398289 - Tigger7 DNA MER2_type -2144 343 25 393 308 91 18 chr13 90475355 90475641 -11397528 - HAL1 LINE L1 -758 1749 1443 260 148 66 0 chr13 90475662 90475723 -11397446 - L1MB8 LINE L1 -21 6157 6093 375 169 52 0 chr13 90475784 90475861 -11397308 - L1MB7 LINE L1 -81 6103 6023 * 3474 145 98 13 chr13 90475860 90476306 -11396863 + L1MA5A LINE L1 5564 6088 -209 1945 121 0 11 chr13 90476306 90476586 -11396583 - AluSx SINE Alu -12 300 24 3474 145 98 13 chr13 90476586 90476816 -11396353 + L1MA5A LINE L1 6088 6297 0 2919 234 95 20 chr13 90476848 90478626 -11394543 - L1MB7 LINE L1 -145 6039 4132 432 0 0 0 chr13 90478693 90478741 -11394428 + (TG)n Simple_repeat Simple_repeat 2 49 0 469 276 107 81 chr13 90478752 90479184 -11393985 - HAL1 LINE L1 -1133 1374 932 221 349 73 33 chr13 90479507 90479779 -11393390 - L2 LINE L2 -1014 2300 2018 325 110 61 0 chr13 90480114 90480196 -11392973 + (TCTA)n Simple_repeat Simple_repeat 3 89 0 293 109 0 22 chr13 90480469 90480515 -11392654 - MLT2B1 LTR ERVL -4 516 472 213 94 0 0 chr13 90480518 90480550 -11392619 + (TC)n Simple_repeat Simple_repeat 2 33 0 1459 160 7 40 chr13 90480594 90480869 -11392300 - MLT2B1 LTR ERVL -254 266 1 403 366 99 8 chr13 90480876 90481119 -11392050 + L2 LINE L2 2639 2903 -411 292 345 115 10 chr13 90481104 90481313 -11391856 + L2 LINE L2 2867 3097 -216 * 291 294 129 29 chr13 90481430 90481600 -11391569 + MIR SINE MIR 65 251 -11 779 302 0 9 chr13 90482080 90482305 -11390864 + MER58A DNA MER1_type 2 224 0 259 352 48 9 chr13 90482346 90482451 -11390718 - L2 LINE L2 -13 3259 3151 8321 41 17 0 chr13 90482616 90484309 -11388860 + L1PA4 LINE L1 4340 6058 -97 273 57 0 0 chr13 90485715 90485750 -11387419 + (A)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr13 90485865 90485894 -11387275 + AT_rich Low_complexity Low_complexity 1 29 0 225 282 34 94 chr13 90486464 90486613 -11386556 - L2 LINE L2 -562 2752 2613 207 186 0 0 chr13 90486810 90486853 -11386316 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 477 263 144 16 chr13 90488053 90488247 -11384922 + MIR SINE MIR 44 262 0 22 0 0 0 chr13 90488789 90488811 -11384358 + AT_rich Low_complexity Low_complexity 1 22 0 228 405 72 0 chr13 90488943 90489054 -11384115 - L2 LINE L2 -18 3254 3136 248 186 34 0 chr13 90489109 90489168 -11384001 + CT-rich Low_complexity Low_complexity 1 61 0 1479 235 19 17 chr13 90489214 90489576 -11383593 - MLT1A1 LTR MaLR -2 363 1 1857 188 85 106 chr13 90489576 90490093 -11383076 - MLT1A1-int LTR MaLR 0 1735 1230 763 157 15 0 chr13 90490094 90490228 -11382941 - MLT1A1-int LTR MaLR -1598 137 2 586 132 11 0 chr13 90490230 90490321 -11382848 - MLT1A1 LTR MaLR 0 365 274 2642 108 11 0 chr13 90490322 90490693 -11382476 - THE1C LTR MaLR 0 375 1 7905 123 48 5 chr13 90490698 90491897 -11381272 - THE1C-int LTR MaLR -6 1574 324 293 127 0 18 chr13 90492004 90492059 -11381110 + L1MB2 LINE L1 6011 6064 -107 212 323 124 19 chr13 90492423 90492584 -11380585 - MIR SINE MIR -69 193 16 32 26 0 0 chr13 90492661 90492700 -11380469 + AT_rich Low_complexity Low_complexity 1 39 0 35 24 0 0 chr13 90493888 90493930 -11379239 + AT_rich Low_complexity Low_complexity 1 42 0 428 35 17 0 chr13 90494032 90494090 -11379079 + (CA)n Simple_repeat Simple_repeat 2 60 0 368 287 37 9 chr13 90495802 90495910 -11377259 - MIR SINE MIR -94 168 58 542 183 0 0 chr13 90495990 90496083 -11377086 - AluSg/x SINE Alu -25 284 192 207 260 24 8 chr13 90496525 90496648 -11376521 + (TATATG)n Simple_repeat Simple_repeat 6 130 0 239 176 88 0 chr13 90496648 90496716 -11376453 + L1MC4 LINE L1 6640 6713 -1329 320 218 46 35 chr13 90498088 90498175 -11374994 - L2 LINE L2 0 3313 3226 331 300 148 56 chr13 90498248 90498585 -11374584 - L2 LINE L2 -27 3286 2919 237 383 35 26 chr13 90498616 90498843 -11374326 - L2 LINE L2 -577 2737 2509 180 309 169 42 chr13 90498966 90499399 -11373770 - L2 LINE L2 -1904 1410 923 442 233 37 155 chr13 90501734 90501979 -11371190 + L1MEd LINE L1 1 216 -5903 606 262 84 60 chr13 90502192 90502642 -11370527 + L1MEd LINE L1 499 959 -5160 274 236 19 9 chr13 90505403 90505509 -11367660 - L1M4 LINE L1 -3188 2958 2852 342 0 0 0 chr13 90507952 90507990 -11365179 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2013 211 38 4 chr13 90509498 90509949 -11363220 - L1MB7 LINE L1 -16 6168 5703 2054 100 0 11 chr13 90509949 90510230 -11362939 + AluSq SINE Alu 1 278 -35 645 293 59 19 chr13 90511202 90511472 -11361697 + MLT1G LTR MaLR 10 290 -300 393 244 189 65 chr13 90511595 90511796 -11361373 + MLT1G LTR MaLR 370 595 0 214 270 0 16 chr13 90511963 90512026 -11361143 + CT-rich Low_complexity Low_complexity 4 65 0 1845 172 112 5 chr13 90513724 90514143 -11359026 - MLT2C2 LTR ERVL 0 464 1 201 329 86 0 chr13 90514148 90514218 -11358951 - L3b LINE CR1 -68 1515 1440 195 42 0 0 chr13 90514282 90514306 -11358863 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1973 121 4 0 chr13 90514308 90514588 -11358581 - AluSx SINE Alu -31 281 1 2165 122 76 15 chr13 90515095 90515438 -11357731 - THE1B LTR MaLR 0 364 1 389 314 63 23 chr13 90515636 90515811 -11357358 + MIR SINE MIR 2 183 -79 297 337 121 5 chr13 90518971 90519161 -11354008 - MIR SINE MIR -3 259 48 334 269 0 83 chr13 90519203 90519276 -11353893 + MER5A DNA MER1_type 7 70 -119 317 299 8 34 chr13 90519276 90519393 -11353776 - MER81 DNA DNA 0 114 1 334 269 0 83 chr13 90519393 90519427 -11353742 + MER5A DNA MER1_type 70 105 -84 312 379 41 0 chr13 90520094 90520239 -11352930 - MIR3 SINE MIR -9 199 49 2006 159 37 3 chr13 90520530 90520883 -11352286 - MLT1A1 LTR MaLR 0 365 1 242 293 0 0 chr13 90520888 90520946 -11352223 + MIR SINE MIR 86 143 -119 251 194 0 16 chr13 90521231 90521293 -11351876 - L1MB3 LINE L1 -36 6147 6087 1303 166 8 12 chr13 90521297 90521538 -11351631 - L1MA4 LINE L1 -279 6021 5782 870 196 35 20 chr13 90521662 90521861 -11351308 + L1 LINE L1 4696 4897 -1249 8460 177 52 19 chr13 90521880 90523207 -11349962 - L1MA4 LINE L1 -510 5793 4351 2701 93 3 0 chr13 90523207 90523561 -11349608 - THE1A LTR MaLR 0 355 1 8460 177 52 19 chr13 90523561 90524529 -11348640 - L1MA4 LINE L1 -1952 4351 3417 596 273 129 32 chr13 90524646 90525578 -11347591 - L1MEd LINE L1 -3684 2445 1455 2701 211 4 4 chr13 90525588 90526101 -11347068 + MLT2B1 LTR ERVL 3 515 -5 432 276 50 32 chr13 90526228 90526513 -11346656 - L1MEd LINE L1 -4862 1257 976 333 203 0 0 chr13 90527734 90527798 -11345371 + MER91 DNA MER1_type 1 64 -76 2117 146 0 0 chr13 90527919 90528227 -11344942 + AluSc SINE Alu 1 308 -1 227 301 98 45 chr13 90529149 90529282 -11343887 + L2 LINE L2 3133 3272 0 595 197 148 21 chr13 90529630 90529772 -11343397 - MER5A DNA MER1_type -21 168 9 239 247 103 31 chr13 90529835 90529932 -11343237 + Charlie7 DNA MER1_type 6 109 -2503 228 289 53 13 chr13 90529901 90530053 -11343116 + Charlie7 DNA MER1_type 2428 2585 -27 * 387 267 138 9 chr13 90530132 90530248 -11342921 - MIR3 SINE MIR -63 145 15 261 283 22 0 chr13 90531555 90531647 -11341522 + (TA)n Simple_repeat Simple_repeat 1 94 0 793 244 6 0 chr13 90531659 90531839 -11341330 + L1MB1 LINE L1 5919 6099 -90 342 235 0 0 chr13 90531839 90531941 -11341228 + (CATA)n Simple_repeat Simple_repeat 3 104 0 1471 218 12 3 chr13 90531993 90532319 -11340850 - L1MA9 LINE L1 -147 6165 5837 221 395 27 27 chr13 90534128 90534313 -11338856 + L2 LINE L2 3079 3263 -9 268 349 89 0 chr13 90534521 90534667 -11338502 + MIR3 SINE MIR 46 204 -4 26 30 0 0 chr13 90535296 90535329 -11337840 + AT_rich Low_complexity Low_complexity 1 33 0 433 243 35 97 chr13 90535569 90535795 -11337374 - MLT1A1 LTR MaLR -152 213 2 382 262 52 29 chr13 90535796 90535968 -11337201 - L1MC/D LINE L1 -2313 5495 5320 1042 310 74 59 chr13 90536111 90537216 -11335953 - L1MC/D LINE L1 -979 5167 4046 818 300 82 22 chr13 90537358 90537758 -11335411 - LTR16B LTR ERVL 0 464 41 225 291 3 66 chr13 90538198 90538303 -11334866 + MIR SINE MIR 18 117 -91 520 231 126 26 chr13 90538307 90538606 -11334563 + MLT1J2 LTR MaLR 60 393 -53 520 231 126 26 chr13 90539719 90540018 -11333151 + MLT1J2 LTR MaLR 60 393 -53 235 358 59 29 chr13 90540798 90541002 -11332167 - MIR SINE MIR -50 212 3 372 348 67 0 chr13 90541419 90541583 -11331586 + MIR SINE MIR 32 206 -56 2450 77 0 0 chr13 90541599 90541899 -11331270 + AluY SINE Alu 1 300 -11 259 191 48 0 chr13 90542390 90542453 -11330716 + (CA)n Simple_repeat Simple_repeat 1 66 0 4446 46 2 0 chr13 90542605 90543145 -11330024 - L1PA5 LINE L1 0 6154 5614 300 106 0 0 chr13 90543476 90543523 -11329646 + MADE1 DNA Mariner 1 47 -33 24 32 0 0 chr13 90544722 90544753 -11328416 + AT_rich Low_complexity Low_complexity 1 31 0 999 81 60 0 chr13 90544862 90545011 -11328158 + L1PA8 LINE L1 6013 6170 -2 4244 179 30 7 chr13 90545348 90546195 -11326974 - L1MB3 LINE L1 -1 6182 5317 727 93 0 0 chr13 90547101 90547198 -11325971 - L1P4 LINE L1 -400 5761 5665 * 6967 157 12 2 chr13 90547195 90548768 -11324401 + L1P4 LINE L1 4067 5649 -512 613 230 61 26 chr13 90548767 90548997 -11324172 - L1MB3 LINE L1 -814 5332 5095 * 225 0 0 0 chr13 90549252 90549277 -11323892 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 253 413 16 5 chr13 90550184 90550373 -11322796 + L2 LINE L2 2891 3081 -191 2570 113 3 3 chr13 90551171 90551535 -11321634 + THE1B LTR MaLR 1 364 0 2295 97 0 0 chr13 90552480 90552769 -11320400 - AluSg SINE Alu -17 293 5 1278 188 61 41 chr13 90555156 90555449 -11317720 - AluJo SINE Alu -13 299 1 1164 272 141 47 chr13 90555707 90556668 -11316501 + HAL1b LINE L1 291 1341 -7 586 301 94 74 chr13 90556740 90557495 -11315674 + L1ME4a LINE L1 5352 6121 0 1895 149 20 3 chr13 90557646 90557947 -11315222 - AluSx SINE Alu -2 310 5 200 306 82 0 chr13 90558325 90558423 -11314746 + MIR SINE MIR 156 261 -1 23 54 0 0 chr13 90559012 90559049 -11314120 + AT_rich Low_complexity Low_complexity 1 37 0 2288 101 7 0 chr13 90559151 90559458 -11313711 - AluSx SINE Alu -3 309 1 24 0 0 0 chr13 90559671 90559695 -11313474 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chr13 90559941 90559975 -11313194 + AT_rich Low_complexity Low_complexity 1 34 0 477 218 30 0 chr13 90560083 90560184 -11312985 - MER58A DNA MER1_type -1 106 3 594 264 24 53 chr13 90560351 90560597 -11312572 - MIR SINE MIR -18 244 6 243 318 45 11 chr13 90560703 90560791 -11312378 + L2 LINE L2 3221 3311 -2 223 307 95 74 chr13 90560801 90561032 -11312137 + L2 LINE L2 3034 3269 -3 356 287 87 33 chr13 90561172 90561322 -11311847 + L2 LINE L2 3115 3272 0 27577 88 8 5 chr13 90561636 90562068 -11311101 - L1P LINE L1 -2161 3985 3556 11221 34 3 0 chr13 90562068 90564186 -11308983 - L1PA4 LINE L1 0 6155 4035 27577 88 8 5 chr13 90564186 90567677 -11305492 - L1P LINE L1 -2590 3556 2 276 255 53 28 chr13 90567726 90568048 -11305121 - L1M4 LINE L1 -2688 3458 3129 287 286 0 18 chr13 90568290 90568402 -11304767 + GA-rich Low_complexity Low_complexity 3 112 0 236 361 49 28 chr13 90568429 90568573 -11304596 + L2 LINE L2 3123 3269 -3 219 270 0 40 chr13 90571186 90571260 -11301909 + GA-rich Low_complexity Low_complexity 1 71 0 920 186 6 0 chr13 90571380 90571547 -11301622 + FRAM SINE Alu 8 175 -1 183 321 0 0 chr13 90572112 90572165 -11301004 - MER5A DNA MER1_type -66 123 71 1164 201 0 5 chr13 90572346 90572555 -11300614 - AluJo SINE Alu -30 282 75 2057 117 7 0 chr13 90575722 90576044 -11297125 + AluSx SINE Alu 1 324 0 241 247 62 12 chr13 90577037 90577118 -11296051 + L1MEd LINE L1 4 88 -6031 209 279 105 12 chr13 90577946 90578032 -11295137 + MIR SINE MIR 16 109 -99 2111 119 0 58 chr13 90578386 90578714 -11294455 + AluSx SINE Alu 1 309 -3 311 255 22 2 chr13 90579249 90579381 -11293788 + MER58A DNA MER1_type 7 163 0 2794 167 46 31 chr13 90580094 90580633 -11292536 + Tigger1 DNA MER2_type 1 547 -1871 9341 122 37 6 chr13 90580638 90581252 -11291917 + Tigger1 DNA MER2_type 908 1501 -917 5737 60 4 11 chr13 90581252 90582004 -11291165 + L1PA8 LINE L1 5426 6172 0 9341 122 37 6 chr13 90582004 90582853 -11290316 + Tigger1 DNA MER2_type 1501 2417 -1 24 0 0 0 chr13 90583885 90583909 -11289260 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 90584003 90584025 -11289144 + AT_rich Low_complexity Low_complexity 1 22 0 414 281 22 7 chr13 90584444 90584579 -11288590 - MIR SINE MIR -1 261 125 1519 225 31 21 chr13 90585248 90585277 -11287892 + MLT1B LTR MaLR 1 28 -362 414 0 0 0 chr13 90585277 90585323 -11287846 + (CA)n Simple_repeat Simple_repeat 1 46 0 1519 225 31 21 chr13 90585323 90585679 -11287490 + MLT1B LTR MaLR 28 390 0 992 258 93 46 chr13 90585990 90586559 -11286610 - HAL1 LINE L1 -285 2222 1627 720 201 115 72 chr13 90586643 90587045 -11286124 + LTR54B LTR ERV1 46 496 -2 475 271 127 61 chr13 90587062 90587784 -11285385 - HAL1 LINE L1 -929 1578 809 258 193 0 102 chr13 90588008 90588096 -11285073 - MLT1J LTR MaLR -61 450 372 525 290 10 57 chr13 90588172 90588365 -11284804 - MLT1J LTR MaLR -317 194 11 464 282 106 106 chr13 90588375 90588925 -11284244 - HAL1 LINE L1 -1901 606 57 201 371 116 24 chr13 90590231 90590568 -11282601 + L2 LINE L2 2472 2839 -475 240 86 0 0 chr13 90590807 90590842 -11282327 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr13 90591823 90591849 -11281320 + AT_rich Low_complexity Low_complexity 1 26 0 478 196 38 169 chr13 90592764 90593030 -11280139 + LTR16A1 LTR ERVL 60 290 -167 903 281 28 30 chr13 90593927 90594361 -11278808 + L1MC4 LINE L1 7575 8007 -35 259 44 44 0 chr13 90595754 90595799 -11277370 + (GA)n Simple_repeat Simple_repeat 2 48 0 204 159 23 0 chr13 90595942 90595986 -11277183 + T-rich Low_complexity Low_complexity 2 46 0 195 42 0 0 chr13 90597722 90597746 -11275423 + (A)n Simple_repeat Simple_repeat 1 24 0 59 0 0 0 chr13 90598501 90598560 -11274609 + AT_rich Low_complexity Low_complexity 1 59 0 182 311 92 71 chr13 90599753 90599949 -11273220 - L2 LINE L2 -8 3305 3106 414 0 0 0 chr13 90600634 90600680 -11272489 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 31 58 0 0 chr13 90600683 90600735 -11272434 + AT_rich Low_complexity Low_complexity 1 52 0 300 27 0 0 chr13 90601078 90601115 -11272054 + (TG)n Simple_repeat Simple_repeat 2 38 0 549 287 51 48 chr13 90601316 90601668 -11271501 + L1MEd LINE L1 895 1247 -4872 335 320 162 18 chr13 90601675 90601903 -11271266 + HAL1 LINE L1 1368 1628 -879 330 26 0 0 chr13 90603352 90603391 -11269778 + (TG)n Simple_repeat Simple_repeat 1 39 0 244 213 49 0 chr13 90603550 90603611 -11269558 + GA-rich Low_complexity Low_complexity 2 65 0 2985 189 6 0 chr13 90603821 90604356 -11268813 - L1PA16 LINE L1 -30 6136 5599 970 57 8 0 chr13 90604382 90604504 -11268665 - AluY SINE Alu -47 264 142 4354 175 22 27 chr13 90604685 90604872 -11268297 + L1MC1 LINE L1 5418 5605 -728 1841 67 9 0 chr13 90604872 90605125 -11268044 + AluY SINE Alu 57 311 0 4354 175 22 27 chr13 90605125 90605851 -11267318 + L1MC1 LINE L1 5605 6327 -6 232 146 0 0 chr13 90605814 90605862 -11267307 + L1MC2 LINE L1 6295 6342 -2 28 61 0 0 chr13 90607286 90607335 -11265834 + AT_rich Low_complexity Low_complexity 1 49 0 261 200 0 0 chr13 90607736 90607781 -11265388 - MLT1L LTR MaLR -225 390 346 201 39 0 0 chr13 90608693 90608719 -11264450 + (TG)n Simple_repeat Simple_repeat 1 26 0 2072 117 3 0 chr13 90608886 90609211 -11263958 - AluY SINE Alu 0 326 1 1404 221 16 0 chr13 90609228 90609540 -11263629 - L1 LINE L1 -1312 4834 4518 1900 245 73 32 chr13 90609619 90610435 -11262734 - L1 LINE L1 -2828 3318 2469 1543 231 0 3 chr13 90611256 90611538 -11261631 + AluJb SINE Alu 1 281 -31 195 42 0 0 chr13 90611541 90611565 -11261604 + (TAA)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr13 90612337 90612360 -11260809 + (TG)n Simple_repeat Simple_repeat 2 24 0 258 160 0 0 chr13 90616674 90616724 -11256445 + (CA)n Simple_repeat Simple_repeat 2 51 0 213 326 0 42 chr13 90616960 90617055 -11256114 + L2 LINE L2 3222 3312 -1 24 67 0 0 chr13 90617143 90617188 -11255981 + AT_rich Low_complexity Low_complexity 1 45 0 477 270 93 0 chr13 90617361 90617609 -11255560 - L1MEc LINE L1 -2980 3235 2965 2432 4 0 0 chr13 90617614 90617881 -11255288 - AluYa5 SINE Alu 0 311 45 344 183 195 0 chr13 90617887 90617969 -11255200 - L1MEc LINE L1 -4306 2090 1993 269 203 0 29 chr13 90617970 90618039 -11255130 - L1MEc LINE L1 -4452 1944 1878 22 0 0 0 chr13 90618150 90618172 -11254997 + AT_rich Low_complexity Low_complexity 1 22 0 313 202 83 12 chr13 90618189 90618273 -11254896 + L1MC4 LINE L1 6614 6703 -1339 349 131 0 50 chr13 90618273 90618372 -11254797 + (TA)n Simple_repeat Simple_repeat 2 95 0 3584 125 21 1 chr13 90618376 90619097 -11254072 - L1PB1 LINE L1 -359 5792 5059 1896 126 7 0 chr13 90619108 90619402 -11253767 + L1PB1 LINE L1 5808 6103 -48 5417 22 2 0 chr13 90619402 90620033 -11253136 + L1PA2 LINE L1 5520 6152 -3 303 138 17 0 chr13 90620036 90620131 -11253038 + L1PB1 LINE L1 6087 6182 0 285 98 0 0 chr13 90620130 90620171 -11252998 + (CA)n Simple_repeat Simple_repeat 2 42 0 2679 116 48 88 chr13 90620173 90620696 -11252473 + L1PA16 LINE L1 5657 6160 -6 237 65 0 0 chr13 90620806 90620837 -11252332 + (CA)n Simple_repeat Simple_repeat 1 31 0 452 249 140 71 chr13 90620855 90621305 -11251864 - L1MC4 LINE L1 -209 7833 7353 271 207 0 49 chr13 90621590 90621672 -11251497 + CT-rich Low_complexity Low_complexity 2 79 0 22 0 0 0 chr13 90621713 90621735 -11251434 + AT_rich Low_complexity Low_complexity 1 22 0 1738 130 54 0 chr13 90621753 90622014 -11251155 - AluSx SINE Alu 0 312 38 403 252 113 25 chr13 90622110 90622384 -11250785 - L1M4 LINE L1 -2995 3151 2854 240 217 58 0 chr13 90622598 90622667 -11250502 + LTR41 LTR ERVL 114 186 -587 620 255 87 47 chr13 90622776 90623098 -11250071 + LTR41 LTR ERVL 429 763 -10 394 331 66 10 chr13 90623143 90623445 -11249724 - L1M4 LINE L1 -3576 2570 2252 421 301 157 36 chr13 90623861 90624395 -11248774 - L2 LINE L2 -503 2811 2213 342 301 85 40 chr13 90626024 90626200 -11246969 + HAL1 LINE L1 1134 1317 -1190 415 274 38 9 chr13 90626275 90626381 -11246788 - MER119 DNA MER1_type -469 114 6 2087 149 39 37 chr13 90626504 90627056 -11246113 - MLT2A2 LTR ERVL 0 554 3 6311 89 15 58 chr13 90627058 90628051 -11245118 - HERVL-A2 LTR ERVL 0 5654 4705 1736 166 7 7 chr13 90628302 90628618 -11244551 - AluSx SINE Alu 0 316 1 670 290 68 0 chr13 90628814 90629021 -11244148 + MER58A DNA MER1_type 1 221 -3 561 154 123 0 chr13 90630227 90630357 -11242812 + L1MB3 LINE L1 6008 6153 -30 390 349 59 37 chr13 90630482 90631190 -11241979 + L1ME3A LINE L1 3615 4338 -1808 21 82 0 0 chr13 90631379 90631428 -11241741 + AT_rich Low_complexity Low_complexity 1 49 0 356 281 128 75 chr13 90631465 90631538 -11241631 + L1ME3A LINE L1 5624 5692 -478 1767 185 3 0 chr13 90631538 90631835 -11241334 - AluJb SINE Alu -14 298 1 356 281 128 75 chr13 90631835 90632135 -11241034 + L1ME3A LINE L1 5692 6017 -153 239 279 171 0 chr13 90632391 90632502 -11240667 - L1ME LINE L1 -418 5703 5574 29 49 0 16 chr13 90632727 90632743 -11240426 + AT_rich Low_complexity Low_complexity 1 16 -44 1758 146 0 21 chr13 90632743 90633023 -11240146 - AluSq SINE Alu -39 274 1 29 49 0 16 chr13 90633023 90633067 -11240102 + AT_rich Low_complexity Low_complexity 16 60 0 38 75 0 0 chr13 90633082 90633162 -11240007 + AT_rich Low_complexity Low_complexity 1 80 0 399 192 80 64 chr13 90634060 90634185 -11238984 + Charlie4 DNA MER1_type 1818 1944 -17 2075 216 22 28 chr13 90634324 90634832 -11238337 - MLT1D LTR MaLR 0 505 1 256 248 193 28 chr13 90635255 90635364 -11237805 - MER5A DNA MER1_type -28 161 35 192 232 21 21 chr13 90635947 90636042 -11237127 + CT-rich Low_complexity Low_complexity 5 99 0 197 349 96 0 chr13 90636643 90636726 -11236443 - L2 LINE L2 -244 3069 2979 196 291 152 61 chr13 90636829 90636994 -11236175 - L2 LINE L2 -371 2943 2764 283 222 28 14 chr13 90637632 90637704 -11235465 - MIR3 SINE MIR -6 202 130 436 275 28 21 chr13 90637949 90638091 -11235078 - MER58B DNA MER1_type -2 339 197 2329 46 30 20 chr13 90638689 90638992 -11234177 - AluY SINE Alu -5 306 1 21 0 0 0 chr13 90639058 90639079 -11234090 + AT_rich Low_complexity Low_complexity 1 21 0 917 101 7 7 chr13 90639079 90639218 -11233951 - L1MA5A LINE L1 -10 6287 6149 750 144 0 0 chr13 90639222 90639340 -11233829 + L1MA5A LINE L1 6051 6168 -129 231 323 19 19 chr13 90639516 90639533 -11233636 - L1MA10 LINE L1 -1 6333 6317 2297 247 80 23 chr13 90639533 90640657 -11232512 - L1ME2 LINE L1 -8 6967 5779 1541 273 97 17 chr13 90640708 90640744 -11232425 - L1ME2 LINE L1 -6265 594 562 2581 27 0 0 chr13 90640744 90641042 -11232127 - AluY SINE Alu -13 298 1 1541 273 97 17 chr13 90641042 90641543 -11231626 - L1ME2 LINE L1 -6297 562 14 2952 151 6 12 chr13 90642192 90642689 -11230480 + LOR1a LTR ERV1 4 497 0 1863 156 0 19 chr13 90643077 90643392 -11229777 - AluJb SINE Alu -3 309 1 258 231 15 15 chr13 90643790 90643855 -11229314 + LTR50 LTR ERVL 17 81 -714 572 279 53 39 chr13 90643972 90644339 -11228830 + LTR50 LTR ERVL 293 509 -14 1782 219 8 66 chr13 90644367 90644897 -11228272 + MLT1D LTR MaLR 3 501 -4 276 323 55 43 chr13 90644941 90645105 -11228064 + L2 LINE L2 2228 2393 -921 22 35 0 0 chr13 90645119 90645148 -11228021 + AT_rich Low_complexity Low_complexity 1 29 0 396 73 0 0 chr13 90645148 90645203 -11227966 - L1PA4 LINE L1 0 6155 6101 1992 25 0 0 chr13 90645203 90645438 -11227731 + L1PA3 LINE L1 5742 5976 -179 229 344 102 37 chr13 90645446 90645769 -11227400 + L2 LINE L2 2424 2767 -547 439 342 113 43 chr13 90645872 90646217 -11226952 + L2 LINE L2 2904 3272 0 1254 173 0 0 chr13 90646445 90646636 -11226533 - THE1B LTR MaLR -173 191 1 * 1756 147 6 66 chr13 90646636 90646980 -11226189 - MER41B LTR ERV1 -199 436 114 1448 223 96 34 chr13 90647183 90647623 -11225546 - MLT1C LTR MaLR 0 467 1 1823 212 97 4 chr13 90647696 90648162 -11225007 - LTR22 LTR ERVK 0 509 1 22 56 0 0 chr13 90648525 90648561 -11224608 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr13 90649148 90649184 -11223985 + AT_rich Low_complexity Low_complexity 1 36 0 10858 146 31 38 chr13 90649353 90650538 -11222631 + Tigger2 DNA MER2_type 727 1892 -826 2236 102 3 7 chr13 90650538 90650841 -11222328 + AluSg1 SINE Alu 1 302 -7 10858 146 31 38 chr13 90650841 90651660 -11221509 + Tigger2 DNA MER2_type 1892 2716 -2 273 319 150 48 chr13 90651855 90652335 -11220834 + HAL1 LINE L1 1170 1698 -809 344 293 28 9 chr13 90652455 90652561 -11220608 + MER20B DNA MER1_type 1 108 -675 198 71 0 0 chr13 90652683 90652711 -11220458 + (TA)n Simple_repeat Simple_repeat 1 28 0 1597 150 87 0 chr13 90653148 90653435 -11219734 + AluSx SINE Alu 1 312 0 209 43 0 0 chr13 90653743 90654043 -11219126 + AT_rich Low_complexity Low_complexity 1 300 0 906 284 164 16 chr13 90654101 90654541 -11218628 - MLT1D LTR MaLR 0 505 1 243 0 0 0 chr13 90655823 90655850 -11217319 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 344 353 19 34 chr13 90656052 90656375 -11216794 + L1MCb LINE L1 47 364 -5681 1261 256 139 68 chr13 90656481 90656615 -11216554 + MLT1E2 LTR MaLR 6 129 -497 2040 160 8 39 chr13 90656615 90657002 -11216167 + THE1C LTR MaLR 1 375 0 1261 256 139 68 chr13 90657002 90657473 -11215696 + MLT1E2 LTR MaLR 129 626 0 6886 70 1 0 chr13 90657614 90658670 -11214499 + L1PA7 LINE L1 5046 6154 0 428 266 125 67 chr13 90659647 90660104 -11213065 - L1MCc LINE L1 -5074 1348 820 2453 97 3 0 chr13 90660256 90660606 -11212563 - L1P LINE L1 -1079 5067 4717 21 0 0 0 chr13 90660763 90660784 -11212385 + AT_rich Low_complexity Low_complexity 1 21 0 2000 136 61 19 chr13 90660915 90661275 -11211894 - THE1C LTR MaLR 0 375 1 9004 130 32 64 chr13 90661275 90662906 -11210263 - THE1C-int LTR MaLR 0 1580 1 1838 153 82 20 chr13 90662906 90663259 -11209910 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr13 90665740 90665762 -11207407 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 90667232 90667260 -11205909 + AT_rich Low_complexity Low_complexity 1 28 0 205 176 20 29 chr13 90667448 90667550 -11205619 + (TA)n Simple_repeat Simple_repeat 1 101 0 45 34 0 0 chr13 90667557 90667616 -11205553 + AT_rich Low_complexity Low_complexity 1 59 0 349 157 0 102 chr13 90667643 90667840 -11205329 + (TA)n Simple_repeat Simple_repeat 1 177 0 906 188 24 6 chr13 90667865 90668030 -11205139 - AluJo SINE Alu -144 168 1 1753 187 207 53 chr13 90669288 90670098 -11203071 - L1MCa LINE L1 -4324 2421 1390 1612 249 16 34 chr13 90670113 90670619 -11202550 - L1MCa LINE L1 -4888 1157 661 2401 195 16 14 chr13 90670619 90671148 -11202021 + LTR27 LTR ERV1 3 599 -138 334 284 0 28 chr13 90671198 90671339 -11201830 + LTR27 LTR ERV1 500 636 0 321 317 50 0 chr13 90671344 90671445 -11201724 - L1MCa LINE L1 -5688 876 771 864 290 37 67 chr13 90671535 90671969 -11201200 - L1MCa LINE L1 -5472 573 153 188 347 41 31 chr13 90672061 90672159 -11201010 + L2 LINE L2 3164 3262 -10 2256 132 27 19 chr13 90673972 90674344 -11198825 + THE1C LTR MaLR 1 375 0 34 65 0 0 chr13 90674493 90674555 -11198614 + AT_rich Low_complexity Low_complexity 1 62 0 226 185 231 0 chr13 90675386 90675451 -11197718 - MLT1J1 LTR MaLR -1 445 366 2457 58 0 0 chr13 90675482 90675777 -11197392 + AluY SINE Alu 3 297 -14 354 194 0 15 chr13 90675809 90675876 -11197293 - MLT1J2 LTR MaLR -123 327 262 980 237 43 0 chr13 90676135 90676367 -11196802 - MER63B DNA MER1_type 0 436 195 305 197 99 0 chr13 90676367 90676438 -11196731 - AluJo SINE Alu -103 199 122 * 842 192 35 64 chr13 90676428 90676631 -11196538 - MER63B DNA MER1_type -237 199 3 904 246 82 8 chr13 90676963 90677329 -11195840 + Charlie5 DNA MER1_type 2232 2624 0 310 339 69 43 chr13 90678009 90678242 -11194927 - L1MC/D LINE L1 -2315 5493 5255 297 284 37 97 chr13 90679489 90679623 -11193546 + MIR SINE MIR 19 144 -118 35 88 0 0 chr13 90680926 90681017 -11192152 + AT_rich Low_complexity Low_complexity 1 91 0 234 230 59 13 chr13 90681051 90681203 -11191966 + (TA)n Simple_repeat Simple_repeat 2 160 0 1854 160 86 6 chr13 90681419 90681756 -11191413 - THE1B LTR MaLR 0 364 1 1820 188 14 11 chr13 90682313 90682673 -11190496 - MLT1A1 LTR MaLR -4 424 1 1646 231 84 24 chr13 90682673 90683122 -11190047 + MLT1D LTR MaLR 30 505 0 205 375 103 11 chr13 90683680 90683952 -11189217 - L2 LINE L2 -665 2649 2353 1338 178 9 68 chr13 90683953 90684291 -11188878 - L1MA10 LINE L1 -3 6331 6014 324 148 0 0 chr13 90684293 90684347 -11188822 - MLT2A2 LTR ERVL 0 453 400 308 275 0 22 chr13 90684387 90684478 -11188691 + L1MC4 LINE L1 6615 6703 -1339 2862 83 20 8 chr13 90684492 90684891 -11188278 - MLT2A1 LTR ERVL -40 404 1 21 71 0 0 chr13 90685510 90685552 -11187617 + AT_rich Low_complexity Low_complexity 1 42 0 193 329 84 58 chr13 90686218 90686443 -11186726 + L3 LINE CR1 937 1167 -410 288 343 73 55 chr13 90686661 90687005 -11186164 + L3 LINE CR1 1068 1417 -160 886 115 20 0 chr13 90687045 90687193 -11185976 - L1MA5A LINE L1 -3 6294 6144 242 346 46 62 chr13 90687367 90687497 -11185672 + MIR SINE MIR 17 144 -64 1281 123 10 0 chr13 90687636 90687840 -11185329 - L1MA2 LINE L1 0 6304 6099 312 120 0 0 chr13 90687861 90687911 -11185258 + (CA)n Simple_repeat Simple_repeat 2 51 0 191 353 0 29 chr13 90687997 90688065 -11185104 + L2 LINE L2 3205 3270 -2 260 309 0 11 chr13 90688561 90688655 -11184514 + MIR SINE MIR 160 252 -10 1994 62 0 0 chr13 90688804 90689044 -11184125 + AluY SINE Alu 59 298 -13 208 264 56 28 chr13 90690648 90690720 -11182449 + MIR SINE MIR 135 208 -54 1778 211 61 35 chr13 90690907 90691218 -11181951 + MLT1D LTR MaLR 1 331 -174 2075 96 20 17 chr13 90691218 90691511 -11181658 + AluSp SINE Alu 1 294 -19 1778 211 61 35 chr13 90691511 90691691 -11181478 + MLT1D LTR MaLR 331 505 0 1180 202 86 39 chr13 90691884 90692246 -11180923 + MER58D DNA MER1_type 2 380 -6 35 24 0 0 chr13 90693203 90693245 -11179924 + AT_rich Low_complexity Low_complexity 1 42 0 1537 72 14 9 chr13 90694252 90694473 -11178696 + L1PA8 LINE L1 5949 6170 -2 34 0 0 0 chr13 90694648 90694682 -11178487 + AT_rich Low_complexity Low_complexity 1 34 0 22 70 0 0 chr13 90695528 90695571 -11177598 + AT_rich Low_complexity Low_complexity 1 43 0 645 227 0 16 chr13 90696515 90696643 -11176526 - FLAM_A SINE Alu -6 127 2 1691 171 3 30 chr13 90697068 90697367 -11175802 - AluJo SINE Alu -21 291 1 5426 122 101 67 chr13 90697709 90699198 -11173971 + pTR5 LTR ERV1 736 2438 0 1617 292 87 28 chr13 90699328 90701045 -11172124 + L1MCc LINE L1 818 2878 -4244 * 2927 215 54 4 chr13 90701042 90701806 -11171363 + L1MB3 LINE L1 5347 6176 -7 1629 120 22 7 chr13 90701814 90702090 -11171079 + L1MA4A LINE L1 6018 6297 -6 1218 246 140 22 chr13 90702127 90702777 -11170392 + L1MCc LINE L1 2909 3583 -3358 262 98 0 0 chr13 90702772 90702813 -11170356 - L1MA4A LINE L1 -25 6278 6238 * 1460 244 37 77 chr13 90702990 90703613 -11169556 + L1MCc LINE L1 4187 4784 -2157 196 318 140 9 chr13 90703759 90703866 -11169303 + L2 LINE L2 3128 3248 -24 260 220 0 0 chr13 90704493 90704543 -11168626 + MIR SINE MIR 8 57 -205 2642 34 9 6 chr13 90704551 90704873 -11168296 - L1PA5 LINE L1 0 6154 5832 1797 247 156 41 chr13 90704875 90705799 -11167370 + L1MC4a LINE L1 6779 7808 0 529 341 88 16 chr13 90706118 90706493 -11166676 + LTR16C LTR ERVL 90 491 0 369 0 0 0 chr13 90706586 90706627 -11166542 + (TG)n Simple_repeat Simple_repeat 2 42 0 1403 246 32 55 chr13 90706633 90707104 -11166065 - MLT1C LTR MaLR -7 460 1 1082 283 28 32 chr13 90707409 90707867 -11165302 + LTR40c LTR ERVL 20 519 0 277 352 0 0 chr13 90708381 90708469 -11164700 + L2 LINE L2 3185 3272 0 619 304 70 16 chr13 90709345 90709588 -11163581 - MIR SINE MIR -2 260 5 250 350 31 0 chr13 90709733 90709830 -11163339 - L3 LINE CR1 -460 1117 1018 5098 158 23 18 chr13 90709895 90710853 -11162316 + L1MA6 LINE L1 5334 6296 -4 213 217 11 76 chr13 90710871 90710963 -11162206 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 2009 133 0 3 chr13 90711960 90712261 -11160908 + AluSx SINE Alu 1 300 -12 225 196 0 0 chr13 90712273 90712319 -11160850 + A-rich Low_complexity Low_complexity 1 46 0 1924 132 10 23 chr13 90712324 90712628 -11160541 + AluSc SINE Alu 5 304 -5 24 0 0 0 chr13 90713125 90713149 -11160020 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr13 90713359 90713395 -11159774 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 90713464 90713486 -11159683 + AT_rich Low_complexity Low_complexity 1 22 0 607 264 11 80 chr13 90714681 90714957 -11158212 - MIR SINE MIR 0 262 6 188 318 51 57 chr13 90715290 90715403 -11157766 + L2 LINE L2 2684 2797 -517 2330 89 0 3 chr13 90715403 90715707 -11157462 + AluSc SINE Alu 1 303 -6 188 318 51 57 chr13 90715707 90715769 -11157400 + L2 LINE L2 2797 2858 -456 188 329 0 14 chr13 90716083 90716153 -11157016 + MER5A DNA MER1_type 38 106 -83 22 0 0 0 chr13 90718203 90718225 -11154944 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr13 90718599 90718634 -11154535 + AT_rich Low_complexity Low_complexity 1 35 0 460 381 91 28 chr13 90718773 90719456 -11153713 + L3 LINE CR1 769 1494 -83 180 0 0 0 chr13 90719471 90719491 -11153678 + (TTG)n Simple_repeat Simple_repeat 2 21 0 268 302 78 0 chr13 90719623 90719752 -11153417 + L2 LINE L2 2439 2577 -737 488 299 56 81 chr13 90719887 90720208 -11152961 + L2 LINE L2 2997 3309 -4 394 236 9 18 chr13 90720296 90720406 -11152763 - L1ME2 LINE L1 -8 6156 6048 450 200 107 47 chr13 90720428 90720578 -11152591 - L1ME2 LINE L1 -196 5968 5810 186 263 40 53 chr13 90724731 90724807 -11148362 + MIR SINE MIR 188 262 0 24 0 0 0 chr13 90725077 90725101 -11148068 + AT_rich Low_complexity Low_complexity 1 24 0 209 167 0 17 chr13 90725171 90725231 -11147938 + (TA)n Simple_repeat Simple_repeat 1 59 0 3207 260 78 12 chr13 90725265 90727133 -11146036 - L1ME1 LINE L1 -183 6377 4427 1333 275 90 45 chr13 90727234 90728706 -11144463 - L1ME1 LINE L1 -3142 3398 1889 478 236 59 66 chr13 90728736 90729007 -11144162 - L1ME1 LINE L1 -4934 1606 1338 242 293 0 75 chr13 90729011 90729144 -11144025 + MLT1K LTR MaLR 102 224 -364 592 353 33 8 chr13 90729257 90729501 -11143668 + L2 LINE L2 2690 2939 -375 1241 175 5 0 chr13 90729508 90729776 -11143393 + AluJb SINE Alu 67 335 0 285 29 0 0 chr13 90729865 90729899 -11143270 + (CA)n Simple_repeat Simple_repeat 2 35 0 431 258 33 25 chr13 90729917 90730037 -11143132 + L2 LINE L2 3192 3312 -1 390 224 34 128 chr13 90730047 90730226 -11142943 + MLT1K LTR MaLR 400 561 -27 402 216 54 34 chr13 90732748 90732765 -11140404 - L1MA10 LINE L1 -3 6331 6315 528 232 63 7 chr13 90732765 90732959 -11140210 - L1ME2 LINE L1 -7 6155 5947 298 189 14 54 chr13 90733254 90733328 -11139841 + L1MC3 LINE L1 7060 7130 -655 1065 229 28 38 chr13 90733332 90733380 -11139789 + L1MC3 LINE L1 7235 7282 -503 2079 116 0 3 chr13 90733380 90733665 -11139504 + AluSx SINE Alu 15 298 -14 1065 229 28 38 chr13 90733665 90733904 -11139265 + L1MC3 LINE L1 7282 7519 -266 1812 244 27 31 chr13 90733904 90734370 -11138799 + MLT2B1 LTR ERVL 1 466 -54 2463 108 55 26 chr13 90734370 90734786 -11138383 + MSTA LTR MaLR 1 428 0 1812 244 27 31 chr13 90734786 90734840 -11138329 + MLT2B1 LTR ERVL 466 519 -1 1193 219 12 0 chr13 90734841 90735097 -11138072 + L1MC3 LINE L1 7515 7773 -12 1819 214 73 55 chr13 90736519 90737132 -11136037 - MLT1E3 LTR MaLR 0 624 1 808 232 19 62 chr13 90737360 90737571 -11135598 - Charlie8 DNA MER1_type -2215 202 1 497 261 79 6 chr13 90738197 90738362 -11134807 + MIR SINE MIR 86 262 0 251 318 45 40 chr13 90739143 90739319 -11133850 + L2 LINE L2 2576 2752 -562 419 370 19 28 chr13 90739568 90739784 -11133385 - MIR SINE MIR 0 262 49 369 290 86 2 chr13 90740073 90740209 -11132960 - MIR SINE MIR -63 145 23 1558 210 55 31 chr13 90740439 90740891 -11132278 - L1MDa LINE L1 -4669 1871 1409 9303 185 20 25 chr13 90740904 90743798 -11129371 - L1MA4A LINE L1 -25 6980 4049 2542 113 13 5 chr13 90743798 90744178 -11128991 + L1PA11 LINE L1 5792 6174 0 9303 185 20 25 chr13 90744178 90744445 -11128724 - L1MA4A LINE L1 -2956 4049 3782 2255 286 33 81 chr13 90744449 90745940 -11127229 - L1MA4A LINE L1 -5321 1528 2 1763 294 150 7 chr13 90745947 90746996 -11126173 - L1MDa LINE L1 -5098 1442 60 2442 7 7 0 chr13 90747138 90747418 -11125751 - L1PA3 LINE L1 0 6155 5874 1603 32 0 3 chr13 90747418 90747624 -11125545 + L1PA3 LINE L1 5707 5890 -265 641 321 75 63 chr13 90747662 90748006 -11125163 - L2 LINE L2 -1138 2176 1819 1879 192 15 15 chr13 90748006 90748397 -11124772 + L1MC1 LINE L1 5938 6328 -5 641 321 75 63 chr13 90748397 90748703 -11124466 - L2 LINE L2 -1495 1819 1518 23 0 0 0 chr13 90750102 90750125 -11123044 + AT_rich Low_complexity Low_complexity 1 23 0 1522 208 16 19 chr13 90751975 90752354 -11120815 + L1MB1 LINE L1 5784 6161 -7 385 113 0 0 chr13 90752866 90752919 -11120250 + Alu SINE Alu 1 53 -250 2151 97 3 0 chr13 90753023 90753312 -11119857 - AluSg SINE Alu -20 290 1 1504 288 84 4 chr13 90756319 90756816 -11116353 - MLT1E LTR MaLR 0 593 57 2295 122 11 6 chr13 90756964 90757317 -11115852 - THE1A LTR MaLR 0 355 1 504 186 152 114 chr13 90757911 90758121 -11115048 - MER20 DNA MER1_type -1 218 1 22 0 0 0 chr13 90758648 90758670 -11114499 + AT_rich Low_complexity Low_complexity 1 22 0 433 289 181 28 chr13 90759495 90759820 -11113349 - MLT1I LTR MaLR -25 384 10 309 82 0 0 chr13 90760555 90760604 -11112565 + (TC)n Simple_repeat Simple_repeat 1 49 0 417 39 0 0 chr13 90760605 90760656 -11112513 + (TG)n Simple_repeat Simple_repeat 2 52 0 631 271 30 25 chr13 90760874 90761077 -11112092 - LTR67 LTR ERVL 0 557 354 246 274 69 10 chr13 90761269 90761371 -11111798 - LTR67 LTR ERVL -449 108 1 218 359 82 18 chr13 90761616 90761786 -11111383 - MIR SINE MIR -70 192 12 1329 218 32 0 chr13 90762285 90762570 -11110599 + AluJo SINE Alu 1 294 -18 2045 130 3 0 chr13 90762742 90763034 -11110135 + AluSg SINE Alu 6 298 -12 1964 25 0 4 chr13 90764272 90764509 -11108660 - L1PA4 LINE L1 -3 6152 5917 271 294 10 0 chr13 90764783 90764885 -11108284 + L2 LINE L2 2149 2251 -1063 1517 194 153 37 chr13 90764919 90765410 -11107759 - LTR10A LTR ERV1 -61 548 1 545 361 157 3 chr13 90765469 90765857 -11107312 + L2 LINE L2 2339 2786 -528 333 258 144 48 chr13 90765903 90766070 -11107099 + MIR SINE MIR 42 224 -38 425 303 74 45 chr13 90766281 90766525 -11106644 + L2 LINE L2 3062 3312 -1 24 0 0 0 chr13 90766529 90766553 -11106616 + AT_rich Low_complexity Low_complexity 1 24 0 336 288 92 51 chr13 90767583 90767996 -11105173 - Charlie7 DNA MER1_type -161 2451 2022 254 290 0 0 chr13 90767997 90768066 -11105103 + CT-rich Low_complexity Low_complexity 2 70 0 1127 278 107 102 chr13 90768120 90768157 -11105012 + L2 LINE L2 1788 1823 -1490 1697 191 0 3 chr13 90768157 90768466 -11104703 - AluSx SINE Alu -4 308 1 1127 278 107 102 chr13 90768466 90768830 -11104339 + L2 LINE L2 1823 2183 -1130 457 233 101 0 chr13 90768830 90768959 -11104210 - MER63A DNA MER1_type 0 210 69 1127 278 107 102 chr13 90768959 90769874 -11103295 + L2 LINE L2 2183 3235 -78 231 319 0 0 chr13 90769874 90769946 -11103223 + CT-rich Low_complexity Low_complexity 3 74 0 263 206 15 15 chr13 90770474 90770542 -11102627 - L1MDa LINE L1 -6204 336 269 1713 193 7 3 chr13 90770983 90771284 -11101885 + AluJb SINE Alu 1 302 -10 241 252 76 42 chr13 90771482 90771601 -11101568 - Charlie7 DNA MER1_type -2458 154 32 369 281 67 49 chr13 90771616 90771780 -11101389 + MIR SINE MIR 2 168 -94 219 261 29 0 chr13 90771842 90771911 -11101258 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 225 327 0 37 chr13 90772336 90772443 -11100726 + LTR33A LTR ERVL 419 521 -2 218 196 0 0 chr13 90774095 90774141 -11099028 + A-rich Low_complexity Low_complexity 1 46 0 343 326 56 0 chr13 90774383 90774561 -11098608 + HAL1 LINE L1 1536 1723 -784 23 54 0 0 chr13 90774730 90774767 -11098402 + AT_rich Low_complexity Low_complexity 1 37 0 310 60 20 20 chr13 90775676 90775726 -11097443 + L1PA4 LINE L1 6095 6144 -11 207 0 0 0 chr13 90775731 90775754 -11097415 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 201 121 0 0 chr13 90777007 90777040 -11096129 + (CA)n Simple_repeat Simple_repeat 2 34 0 276 165 41 8 chr13 90777097 90777218 -11095951 + (TA)n Simple_repeat Simple_repeat 2 126 0 2415 80 6 0 chr13 90778335 90778646 -11094523 + AluSp SINE Alu 1 313 0 26 0 0 0 chr13 90778760 90778786 -11094383 + AT_rich Low_complexity Low_complexity 1 26 0 439 352 102 9 chr13 90779389 90779824 -11093345 - L2 LINE L2 -78 3235 2764 27 62 0 0 chr13 90780909 90780957 -11092212 + AT_rich Low_complexity Low_complexity 1 48 0 647 285 51 37 chr13 90781098 90781449 -11091720 - MLT1I LTR MaLR -53 356 1 899 107 13 44 chr13 90781724 90781883 -11091286 - L1MA3 LINE L1 0 6305 6152 293 345 40 14 chr13 90782038 90782186 -11090983 - L2 LINE L2 0 3313 3162 270 256 56 11 chr13 90782198 90782288 -11090881 + MER94 DNA DNA 3 96 -38 383 282 86 59 chr13 90782303 90782523 -11090646 - L2 LINE L2 -161 3152 2927 1134 148 43 38 chr13 90782583 90782793 -11090376 + THE1B LTR MaLR 1 211 -153 602 254 0 0 chr13 90782832 90782954 -11090215 - FLAM_A SINE Alu -11 122 1 1406 193 22 71 chr13 90783114 90783482 -11089687 + MLT1B LTR MaLR 3 352 -38 315 71 0 0 chr13 90783483 90783525 -11089644 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr13 90784515 90784540 -11088629 + AT_rich Low_complexity Low_complexity 1 25 0 316 273 0 0 chr13 90784583 90784660 -11088509 - L2 LINE L2 -1363 1951 1875 1845 158 3 3 chr13 90784671 90785000 -11088169 - L1MA5 LINE L1 -7 6293 5965 199 306 0 0 chr13 90785148 90785197 -11087972 + MIR SINE MIR 50 98 -164 2155 78 41 3 chr13 90785459 90785754 -11087415 + AluY SINE Alu 1 306 -5 185 197 16 0 chr13 90785764 90785825 -11087344 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 218 0 94 0 chr13 90788400 90788432 -11084737 + A-rich Low_complexity Low_complexity 3 37 0 567 285 35 6 chr13 90790026 90790198 -11082971 - MIR SINE MIR 0 262 86 21 0 0 0 chr13 90790265 90790286 -11082883 + AT_rich Low_complexity Low_complexity 1 21 0 1271 267 95 56 chr13 90790683 90791429 -11081740 + L1ME1 LINE L1 5276 6050 -116 1523 147 3 102 chr13 90792870 90793038 -11080131 - AluJb SINE Alu -18 284 160 2111 123 7 0 chr13 90793038 90793330 -11079839 + AluSx SINE Alu 1 294 -18 1523 147 3 102 chr13 90793330 90793475 -11079694 - AluJb SINE Alu -142 160 2 528 294 138 9 chr13 90793605 90793836 -11079333 - MIR SINE MIR 0 262 2 2108 94 10 26 chr13 90795474 90795781 -11077388 + AluSc SINE Alu 1 302 -7 1548 191 40 62 chr13 90795873 90796244 -11076925 + MLT1A1 LTR MaLR 3 365 0 2208 105 17 0 chr13 90796941 90797237 -11075932 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr13 90797738 90797761 -11075408 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 90798635 90798659 -11074510 + AT_rich Low_complexity Low_complexity 1 24 0 4476 59 7 0 chr13 90798691 90799252 -11073917 - L1PA7 LINE L1 -2 6152 5588 1017 35 28 14 chr13 90799870 90800015 -11073154 + (TTTC)n Simple_repeat Simple_repeat 3 149 0 21 0 0 0 chr13 90801702 90801723 -11071446 + AT_rich Low_complexity Low_complexity 1 21 0 271 113 0 38 chr13 90801979 90802032 -11071137 - MLT2D LTR ERVL -6 514 464 1599 178 44 46 chr13 90802086 90802452 -11070717 - MLT2D LTR ERVL -47 367 3 304 329 47 96 chr13 90802454 90802523 -11070646 - MLT1J LTR MaLR -103 408 337 741 189 8 0 chr13 90802523 90802655 -11070514 - FLAM_C SINE Alu 0 133 1 304 329 47 96 chr13 90802655 90803014 -11070155 - MLT1J LTR MaLR -174 337 1 587 302 25 28 chr13 90803021 90803258 -11069911 - MIR SINE MIR -13 249 17 3753 27 2 0 chr13 90803461 90803900 -11069269 + L1PA4 LINE L1 5703 6142 -13 2102 130 3 0 chr13 90803950 90804258 -11068911 - AluSg SINE Alu -1 309 1 1325 117 29 25 chr13 90804500 90804739 -11068430 - L1MA9 LINE L1 -2 6310 6071 263 310 103 0 chr13 90806724 90806840 -11066329 + MIR SINE MIR 61 188 -74 1719 142 49 82 chr13 90807382 90807770 -11065399 + THE1C LTR MaLR 1 375 0 555 304 101 18 chr13 90807858 90808085 -11065084 + MIR SINE MIR 15 260 -2 21 36 0 0 chr13 90808086 90808114 -11065055 + AT_rich Low_complexity Low_complexity 1 28 0 1832 155 3 22 chr13 90808218 90808534 -11064635 + AluSq SINE Alu 1 310 -3 853 90 0 0 chr13 90808794 90808916 -11064253 + (GA)n Simple_repeat Simple_repeat 1 122 0 1830 129 194 22 chr13 90809025 90809390 -11063779 - MSTA LTR MaLR 0 428 1 292 109 0 78 chr13 90809390 90809454 -11063715 - MSTA-int LTR MaLR 0 1649 1522 496 170 0 9 chr13 90809454 90809554 -11063615 - MSTA LTR MaLR -342 90 1 727 254 11 132 chr13 90810093 90810373 -11062796 + MIR SINE MIR 2 247 -15 312 418 0 6 chr13 90810678 90810836 -11062333 - MIR SINE MIR -94 168 12 376 336 48 35 chr13 90811626 90811855 -11061314 + L2 LINE L2 2216 2447 -867 302 328 28 72 chr13 90812069 90812249 -11060920 + L2 LINE L2 2524 2695 -619 1366 153 188 16 chr13 90813812 90814132 -11059037 - THE1C LTR MaLR 0 375 1 1019 235 47 55 chr13 90814808 90815170 -11057999 + MLT1A2 LTR MaLR 1 359 -15 198 0 0 0 chr13 90816336 90816358 -11056811 + (T)n Simple_repeat Simple_repeat 1 22 0 2040 111 3 49 chr13 90816569 90816893 -11056276 - AluSx SINE Alu -3 309 1 518 263 69 83 chr13 90817168 90817439 -11055730 - L1M4 LINE L1 -2922 3224 2951 1613 153 24 24 chr13 90817439 90817734 -11055435 + L1PB4 LINE L1 5844 6138 -18 180 0 0 0 chr13 90817737 90817757 -11055412 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 518 263 69 83 chr13 90817757 90817900 -11055269 - L1M4 LINE L1 -3197 2949 2812 516 292 106 23 chr13 90818135 90818399 -11054770 - L1MC/D LINE L1 -1996 5812 5527 1192 130 0 0 chr13 90818586 90818755 -11054414 + AluSg/x SINE Alu 133 301 -11 307 319 82 37 chr13 90818777 90819047 -11054122 - L1MC/D LINE L1 -1005 5141 4860 1828 176 95 18 chr13 90819583 90819974 -11053195 + MSTA LTR MaLR 8 428 0 21 0 0 0 chr13 90820039 90820060 -11053109 + AT_rich Low_complexity Low_complexity 1 21 0 1790 100 65 4 chr13 90820111 90820390 -11052779 + AluY SINE Alu 1 296 -15 1159 241 70 83 chr13 90820572 90821099 -11052070 - MLT2B1 LTR ERVL 0 520 1 2188 59 3 24 chr13 90821367 90821692 -11051477 - AluY SINE Alu 0 319 1 1609 233 77 18 chr13 90823129 90823585 -11049584 - MER110 LTR ERV1 -6 485 3 192 398 54 11 chr13 90824364 90824457 -11048712 - MIR3 SINE MIR -110 98 2 787 234 105 8 chr13 90824783 90825031 -11048138 - MER5C DNA MER1_type -52 272 1 1737 171 0 0 chr13 90825204 90825513 -11047656 - AluJb SINE Alu 0 311 3 198 319 101 36 chr13 90825540 90825678 -11047491 + L2 LINE L2 3167 3313 0 1323 258 99 12 chr13 90825823 90826246 -11046923 + MLT1C LTR MaLR 1 460 -7 548 287 99 40 chr13 90827790 90827992 -11045177 - MIR SINE MIR -16 246 33 1682 148 0 25 chr13 90828853 90829137 -11044032 - AluSx SINE Alu -2 310 34 25 31 0 0 chr13 90829205 90829237 -11043932 + AT_rich Low_complexity Low_complexity 1 32 0 2295 82 0 16 chr13 90829323 90829629 -11043540 - AluY SINE Alu -10 301 1 25 51 0 0 chr13 90829878 90829917 -11043252 + AT_rich Low_complexity Low_complexity 1 39 0 1275 81 0 0 chr13 90829917 90830090 -11043079 - L1MA1 LINE L1 -1 6301 6129 1673 99 7 50 chr13 90830090 90830372 -11042797 + L1MA1 LINE L1 5772 6041 -261 204 374 14 29 chr13 90831247 90831397 -11041772 + MIR SINE MIR 4 150 -58 255 289 24 12 chr13 90831448 90831531 -11041638 + GA-rich Low_complexity Low_complexity 4 87 0 241 397 17 0 chr13 90832307 90832423 -11040746 - L2 LINE L2 -36 3277 3160 457 226 88 25 chr13 90832480 90832639 -11040530 - MER97a DNA MER1_type? -725 169 1 233 359 106 6 chr13 90833118 90833288 -11039881 - L2 LINE L2 -308 3005 2819 242 135 40 40 chr13 90834648 90834722 -11038447 + (TA)n Simple_repeat Simple_repeat 1 74 0 237 206 29 0 chr13 90834809 90834877 -11038292 + (TA)n Simple_repeat Simple_repeat 2 71 0 449 17 17 0 chr13 90834879 90834937 -11038232 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 724 181 0 0 chr13 90834942 90835058 -11038111 - FLAM_C SINE Alu -27 116 1 23 33 0 0 chr13 90835418 90835448 -11037721 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr13 90836382 90836420 -11036749 + AT_rich Low_complexity Low_complexity 1 38 0 357 210 43 19 chr13 90837573 90837735 -11035434 + (TA)n Simple_repeat Simple_repeat 2 167 0 256 253 40 29 chr13 90837665 90837839 -11035330 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 * 2644 263 67 40 chr13 90837869 90840641 -11032528 + L1M4 LINE L1 2 2922 -3722 1624 131 0 0 chr13 90840641 90840870 -11032299 + AluSg/x SINE Alu 70 298 -14 1448 228 66 19 chr13 90842451 90842815 -11030354 - MSTD LTR MaLR -15 381 1 19340 35 5 1 chr13 90843037 90845415 -11027754 - L1P LINE L1 -1116 5030 2643 21 36 0 0 chr13 90845763 90845791 -11027378 + AT_rich Low_complexity Low_complexity 1 28 0 260 275 29 80 chr13 90848537 90848675 -11024494 - L2 LINE L2 -236 3077 2947 426 108 0 7 chr13 90851317 90851387 -11021782 - L1PA15 LINE L1 -204 5927 5861 13177 155 60 8 chr13 90852733 90855045 -11018124 + Tigger2 DNA MER2_type 286 2718 0 252 260 58 10 chr13 90855236 90855340 -11017829 - L1ME LINE L1 -485 5636 5528 215 239 15 30 chr13 90855820 90855887 -11017282 + GA-rich Low_complexity Low_complexity 1 66 0 340 297 34 25 chr13 90856315 90856433 -11016736 + MIR SINE MIR 18 136 -126 703 125 24 8 chr13 90857283 90857416 -11015753 + MSTA LTR MaLR 1 139 -236 556 198 36 9 chr13 90857411 90857522 -11015647 + MER58B DNA MER1_type 217 330 -11 * 1969 148 36 36 chr13 90857656 90858020 -11015149 + THE1B LTR MaLR 1 364 0 812 174 42 0 chr13 90859046 90859236 -11013933 + L1MA8 LINE L1 6094 6291 0 243 61 0 0 chr13 90860403 90860436 -11012733 + (CA)n Simple_repeat Simple_repeat 1 33 0 270 306 68 34 chr13 90860780 90860927 -11012242 + MIR SINE MIR 25 176 -86 247 299 0 0 chr13 90861238 90861305 -11011864 + (TG)n Simple_repeat Simple_repeat 2 68 0 230 409 109 6 chr13 90861445 90861765 -11011404 + L2 LINE L2 2043 2395 -919 1886 123 102 3 chr13 90862075 90862359 -11010810 - AluSx SINE Alu 0 312 1 319 125 0 18 chr13 90862435 90862491 -11010678 - MLT2A1 LTR ERVL 0 453 399 240 229 22 44 chr13 90862491 90862674 -11010495 + (TA)n Simple_repeat Simple_repeat 2 180 0 223 149 0 30 chr13 90862689 90862756 -11010413 + (TA)n Simple_repeat Simple_repeat 2 66 0 2735 101 27 14 chr13 90862759 90863173 -11009996 - MLT2A1 LTR ERVL -25 419 1 2639 98 5 11 chr13 90863319 90863696 -11009473 - THE1C LTR MaLR 0 375 1 8010 137 39 51 chr13 90863830 90865265 -11007904 - THE1C-int LTR MaLR -162 1418 1 2393 117 53 6 chr13 90865265 90865623 -11007546 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr13 90865769 90865804 -11007365 + AT_rich Low_complexity Low_complexity 1 35 0 512 245 6 38 chr13 90866199 90866358 -11006811 + MIR SINE MIR 88 241 -21 42 48 0 0 chr13 90867345 90867408 -11005761 + AT_rich Low_complexity Low_complexity 1 63 0 50 31 0 0 chr13 90867660 90867724 -11005445 + AT_rich Low_complexity Low_complexity 1 64 0 249 108 0 0 chr13 90867883 90867920 -11005249 + (CA)n Simple_repeat Simple_repeat 2 38 0 332 247 73 91 chr13 90868183 90868534 -11004635 - MLT1J1 LTR MaLR 0 446 8 203 250 17 17 chr13 90870544 90870604 -11002565 + L2 LINE L2 3250 3309 -4 3930 210 38 25 chr13 90872465 90873805 -10999364 - L1MB5 LINE L1 0 6174 4815 308 358 57 16 chr13 90873873 90874066 -10999103 - L3 LINE CR1 -2 1575 1375 6605 146 30 9 chr13 90874344 90875475 -10997694 - Tigger1 DNA MER2_type -17 2401 1247 3214 158 198 43 chr13 90875465 90876188 -10996981 - Tigger1 DNA MER2_type -1582 836 2 * 357 250 38 30 chr13 90878440 90878572 -10994597 + MER94 DNA DNA 2 134 0 23 33 0 0 chr13 90879048 90879078 -10994091 + AT_rich Low_complexity Low_complexity 1 30 0 2272 143 5 27 chr13 90879455 90879827 -10993342 - THE1B LTR MaLR 0 364 1 214 200 0 0 chr13 90880126 90880166 -10993003 + (TA)n Simple_repeat Simple_repeat 2 41 0 666 303 50 7 chr13 90880692 90880992 -10992177 + L2 LINE L2 2152 2464 -850 714 238 0 25 chr13 90880994 90881154 -10992015 - MER45A DNA AcHobo -7 171 16 383 308 139 56 chr13 90881288 90881697 -10991472 + L2 LINE L2 2532 2974 -340 2042 148 47 16 chr13 90881720 90882084 -10991085 - THE1C LTR MaLR 0 375 1 6045 127 69 11 chr13 90882084 90883030 -10990139 - THE1C-int LTR MaLR 0 1580 580 4953 148 58 1 chr13 90883028 90883834 -10989335 - THE1C-int LTR MaLR -726 854 3 * 2039 142 56 11 chr13 90883836 90884195 -10988974 - THE1C LTR MaLR 0 375 1 294 200 78 33 chr13 90884780 90884870 -10988299 + MLT1I LTR MaLR 316 409 0 184 322 22 33 chr13 90886040 90886130 -10987039 - MIR SINE MIR -142 120 32 24 56 0 42 chr13 90886955 90887026 -10986143 + AT_rich Low_complexity Low_complexity 1 68 0 2486 102 8 6 chr13 90887514 90887867 -10985302 - THE1A LTR MaLR 0 355 2 9896 119 42 13 chr13 90887868 90889403 -10983766 - THE1A-int LTR MaLR 0 1580 1 2203 102 2 99 chr13 90889403 90889796 -10983373 - THE1A LTR MaLR 0 355 1 1446 135 32 0 chr13 90891331 90891583 -10981586 + L1MA9 LINE L1 6016 6275 -37 1513 173 36 39 chr13 90893098 90893405 -10979764 + AluJb SINE Alu 1 306 -6 466 298 84 40 chr13 90893669 90894119 -10979050 + L2 LINE L2 2831 3300 -13 198 0 0 0 chr13 90894119 90894141 -10979028 + (TGAA)n Simple_repeat Simple_repeat 3 24 0 210 273 45 34 chr13 90894752 90894840 -10978329 + MIR SINE MIR 54 142 -120 503 263 168 33 chr13 90896138 90896442 -10976727 - L1MC/D LINE L1 -440 5681 5354 6936 143 14 5 chr13 90896738 90897812 -10975357 - L1P3 LINE L1 -5377 1084 1 946 183 33 11 chr13 90897813 90897993 -10975176 - THE1B LTR MaLR -180 184 1 11027 106 19 5 chr13 90898000 90899553 -10973616 - THE1B-int LTR MaLR -6 1574 1 1941 156 21 43 chr13 90899586 90899958 -10973211 - THE1B LTR MaLR 0 364 1 1512 153 11 33 chr13 90899959 90900233 -10972936 + THE1C LTR MaLR 108 375 0 9363 123 23 55 chr13 90900233 90901865 -10971304 + THE1C-int LTR MaLR 1 1580 0 2041 133 38 25 chr13 90901867 90902235 -10970934 + THE1C LTR MaLR 3 375 0 29 28 0 0 chr13 90902317 90902353 -10970816 + AT_rich Low_complexity Low_complexity 1 36 0 312 120 0 0 chr13 90902592 90902642 -10970527 + (CAT)n Simple_repeat Simple_repeat 3 52 0 24 53 0 0 chr13 90903230 90903268 -10969901 + AT_rich Low_complexity Low_complexity 1 38 0 26 82 0 0 chr13 90905224 90905285 -10967884 + AT_rich Low_complexity Low_complexity 1 61 0 203 184 0 0 chr13 90905857 90905895 -10967274 + (TAA)n Simple_repeat Simple_repeat 3 40 0 215 318 12 24 chr13 90905975 90906060 -10967109 - MIR SINE MIR -85 177 94 23 0 0 0 chr13 90906228 90906251 -10966918 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr13 90906493 90906513 -10966656 + (CA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr13 90906600 90906624 -10966545 + AT_rich Low_complexity Low_complexity 1 24 0 353 353 120 18 chr13 90908895 90909221 -10963948 - L3 LINE CR1 -443 1134 776 281 271 29 0 chr13 90909735 90909805 -10963364 + MIR SINE MIR 9 80 -182 598 307 68 26 chr13 90910189 90910792 -10962377 + L1M4 LINE L1 2110 2737 -3409 320 288 98 78 chr13 90912369 90913074 -10960095 + HAL1 LINE L1 1074 1792 -715 557 301 75 34 chr13 90913101 90913606 -10959563 + HAL1 LINE L1 1975 2500 -7 201 369 54 39 chr13 90915018 90915148 -10958021 - L2 LINE L2 -1 3271 3140 341 185 0 0 chr13 90915415 90915469 -10957700 + Charlie5 DNA MER1_type 7 60 -2552 238 361 30 0 chr13 90915547 90915680 -10957489 + MIR SINE MIR 53 189 -73 1822 130 0 80 chr13 90915967 90916291 -10956878 - AluSx SINE Alu -8 304 7 1088 219 33 98 chr13 90918366 90918755 -10954414 - MLT1A1 LTR MaLR -1 364 1 240 143 0 0 chr13 90919084 90919126 -10954043 + (TA)n Simple_repeat Simple_repeat 2 43 0 518 167 0 29 chr13 90920170 90920272 -10952897 + L1PA7 LINE L1 6056 6154 0 185 377 0 0 chr13 90920419 90920480 -10952689 - MIR SINE MIR -63 145 85 304 248 37 0 chr13 90920553 90920598 -10952571 - L1MA10 LINE L1 -7 6327 6283 2064 261 68 24 chr13 90920598 90921470 -10951699 - L1ME1 LINE L1 -44 6191 5297 2167 263 68 16 chr13 90921471 90922690 -10950479 - L1ME1 LINE L1 -3157 3058 1805 424 268 60 12 chr13 90922706 90922874 -10950295 + MER96B DNA MER1_type? 3 178 -239 26 98 0 0 chr13 90923108 90923190 -10949979 + AT_rich Low_complexity Low_complexity 1 82 0 33 56 0 0 chr13 90923400 90923454 -10949715 + AT_rich Low_complexity Low_complexity 1 54 0 1753 276 64 2 chr13 90924222 90924770 -10948399 - L1ME1 LINE L1 -5575 821 240 22 0 0 0 chr13 90925752 90925774 -10947395 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 90926144 90926166 -10947003 + AT_rich Low_complexity Low_complexity 1 22 0 715 223 54 0 chr13 90927075 90927241 -10945928 + L1MB1 LINE L1 5992 6166 -2 2086 96 45 0 chr13 90927763 90928054 -10945115 + AluSp SINE Alu 1 304 -9 209 358 22 29 chr13 90928495 90928632 -10944537 - L3 LINE CR1 -1023 554 419 471 335 147 38 chr13 90928745 90929325 -10943844 + L3 LINE CR1 684 1326 -251 1123 155 43 3 chr13 90932021 90932279 -10940890 + MER46B DNA MER2_type 8 236 0 22 0 0 0 chr13 90932379 90932401 -10940768 + AT_rich Low_complexity Low_complexity 1 22 0 2107 133 7 0 chr13 90932679 90932979 -10940190 + AluSx SINE Alu 3 304 -8 187 330 104 19 chr13 90933129 90933235 -10939934 - L2 LINE L2 -31 3282 3168 1562 162 3 67 chr13 90933837 90934152 -10939017 - AluY SINE Alu -16 295 1 248 257 29 29 chr13 90934156 90934226 -10938943 - MER5A DNA MER1_type -117 72 3 4033 212 20 0 chr13 90934235 90935120 -10938049 + L1 LINE L1 3817 4719 -1427 595 155 165 77 chr13 90935120 90935314 -10937855 + MSTA LTR MaLR 1 211 -217 6555 209 47 2 chr13 90935322 90936589 -10936580 + MSTA-int LTR MaLR 329 1651 0 1757 187 104 20 chr13 90936589 90936984 -10936185 + MSTA LTR MaLR 1 428 0 2719 207 21 6 chr13 90936985 90937741 -10935428 + L1P4 LINE L1 4716 5479 -687 478 266 130 29 chr13 90937925 90938199 -10934970 - L1ME LINE L1 -499 5671 5354 216 0 0 0 chr13 90938771 90938795 -10934374 + (TG)n Simple_repeat Simple_repeat 2 25 0 1000 49 0 0 chr13 90939241 90939364 -10933805 + AluY SINE Alu 189 311 0 363 299 19 65 chr13 90940773 90941034 -10932135 - MER112 DNA MER1_type -11 249 1 198 371 33 56 chr13 90944833 90945046 -10928123 - MIR SINE MIR -49 213 6 1848 139 79 17 chr13 90945202 90945555 -10927614 + THE1C LTR MaLR 1 375 0 5722 138 56 70 chr13 90945557 90945978 -10927191 + THE1C-int LTR MaLR 3 429 -1151 670 238 67 6 chr13 90945978 90946142 -10927027 - FAM SINE Alu -1 174 1 329 77 19 0 chr13 90946142 90946194 -10926975 - AluSc SINE Alu -165 134 82 5722 138 56 70 chr13 90946194 90946933 -10926236 + THE1C-int LTR MaLR 427 1142 -438 28 0 0 0 chr13 90947220 90947248 -10925921 + AT_rich Low_complexity Low_complexity 1 28 0 271 196 0 0 chr13 90947976 90948027 -10925142 - LTR33A LTR ERVL 0 523 473 231 321 98 11 chr13 90948253 90948437 -10924732 + MLT1K LTR MaLR 389 588 0 22 35 0 0 chr13 90949666 90949695 -10923474 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 90949761 90949783 -10923386 + AT_rich Low_complexity Low_complexity 1 22 0 1202 177 14 5 chr13 90949945 90950165 -10923004 + AluJo SINE Alu 81 302 -10 21 0 0 0 chr13 90951533 90951554 -10921615 + AT_rich Low_complexity Low_complexity 1 21 0 653 276 73 42 chr13 90951979 90952265 -10920904 - LTR16A1 LTR ERVL -2 455 161 3741 94 284 17 chr13 90952314 90952965 -10920204 + LTR12 LTR ERV1 1 825 -1 431 230 11 0 chr13 90953159 90953246 -10919923 - MER58 DNA MER1_type 0 2420 128 248 214 61 51 chr13 90953747 90953845 -10919324 + MLT1I LTR MaLR 281 379 -30 211 295 192 0 chr13 90954040 90954118 -10919051 - MIR SINE MIR -139 123 31 529 198 0 0 chr13 90954835 90954931 -10918238 - FLAM_C SINE Alu -32 111 16 374 281 44 7 chr13 90955063 90955198 -10917971 + L1M2 LINE L1 5325 5464 -836 24 77 0 0 chr13 90955221 90955273 -10917896 + AT_rich Low_complexity Low_complexity 1 52 0 34 55 0 0 chr13 90955406 90955461 -10917708 + AT_rich Low_complexity Low_complexity 1 55 0 288 130 0 0 chr13 90955703 90955749 -10917420 + (CA)n Simple_repeat Simple_repeat 2 47 0 281 265 181 39 chr13 90956005 90956209 -10916960 - MLT1H LTR MaLR -316 233 1 283 302 10 10 chr13 90956464 90956560 -10916609 - HERVL LTR ERVL -317 5337 5242 307 85 85 0 chr13 90957139 90957186 -10915983 - THE1B LTR MaLR 0 364 314 2080 115 20 0 chr13 90957286 90957590 -10915579 - THE1B LTR MaLR -54 310 1 364 316 37 32 chr13 90957707 90957894 -10915275 - LTR41 LTR ERVL -585 188 1 334 238 45 3 chr13 90957948 90958019 -10915150 + L1M2 LINE L1 5696 5782 -518 2282 165 52 0 chr13 90958019 90958420 -10914749 - MSTB LTR MaLR 0 426 5 334 238 45 3 chr13 90958420 90958460 -10914709 + L1M2 LINE L1 5782 5819 -481 1768 178 14 3 chr13 90958592 90958885 -10914284 - AluJb SINE Alu -16 296 1 768 102 19 0 chr13 90961705 90961813 -10911356 + THE1C LTR MaLR 2 111 -264 1095 144 10 59 chr13 90961815 90962017 -10911152 - THE1B LTR MaLR -2 362 171 6286 70 9 20 chr13 90962033 90962718 -10910451 - L1PA7 LINE L1 -1 6153 5487 2291 92 3 0 chr13 90962718 90963011 -10910158 - AluY SINE Alu -17 294 1 6286 70 9 20 chr13 90963011 90963228 -10909941 - L1PA7 LINE L1 -667 5487 5269 14135 85 8 10 chr13 90963328 90963745 -10909424 - L1PA6 LINE L1 -257 5897 5481 2259 92 3 0 chr13 90963745 90964038 -10909131 - AluY SINE Alu -17 294 1 14135 85 8 10 chr13 90964038 90966153 -10907016 - L1PA6 LINE L1 -673 5481 3370 287 264 16 66 chr13 90966255 90966376 -10906793 - L1MEc LINE L1 -6243 153 39 21 36 0 0 chr13 90966384 90966412 -10906757 + AT_rich Low_complexity Low_complexity 1 28 0 2246 204 18 12 chr13 90966566 90967072 -10906097 + L1 LINE L1 4785 5293 -853 198 0 0 0 chr13 90967073 90967095 -10906074 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 198 0 0 0 chr13 90967179 90967201 -10905968 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 392 37 19 0 chr13 90967200 90967254 -10905915 + (TG)n Simple_repeat Simple_repeat 2 56 0 1197 246 77 39 chr13 90967357 90968071 -10905098 - L1M1 LINE L1 -743 5403 4720 1241 220 0 80 chr13 90968071 90968398 -10904771 - AluJo SINE Alu -1 301 1 1197 246 77 39 chr13 90968398 90968469 -10904700 - L1M1 LINE L1 -1426 4720 4653 229 316 52 59 chr13 90968693 90968829 -10904340 + MER5B DNA MER1_type 44 178 0 1078 139 5 38 chr13 90969092 90969301 -10903868 - L1MA2 LINE L1 0 6304 6103 2949 162 0 4 chr13 90971803 90972302 -10900867 + L1PA15 LINE L1 5668 6164 -1 189 0 0 0 chr13 90975054 90975075 -10898094 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr13 90975413 90975438 -10897731 + AT_rich Low_complexity Low_complexity 1 25 0 2123 101 0 20 chr13 90976071 90976367 -10896802 - AluSg SINE Alu -8 302 13 3146 133 47 0 chr13 90978445 90978917 -10894252 + Charlie3 DNA MER1_type 7 500 -2210 * 3219 98 6 13 chr13 90978911 90979378 -10893791 + Charlie3 DNA MER1_type 2242 2705 -5 216 67 0 0 chr13 90979895 90979925 -10893244 + (CA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr13 90980075 90980123 -10893046 + AT_rich Low_complexity Low_complexity 1 48 0 396 343 194 14 chr13 90980320 90980687 -10892482 - HAL1 LINE L1 -621 1886 1454 287 159 0 0 chr13 90980706 90980750 -10892419 - MLT1C LTR MaLR -7 460 417 595 209 39 0 chr13 90980791 90980944 -10892225 - L1 LINE L1 -824 5322 5164 384 328 47 47 chr13 90982239 90982538 -10890631 + L1ME LINE L1 5265 5563 -558 996 113 120 0 chr13 90983200 90983350 -10889819 - AluSg SINE Alu -105 205 38 246 299 29 7 chr13 90983402 90983539 -10889630 + HAL1 LINE L1 2242 2381 -126 938 171 19 0 chr13 90984844 90985002 -10888167 - L1M1 LINE L1 -7166 399 239 * 3341 200 5 5 chr13 90984993 90985624 -10887545 + L1M1 LINE L1 1258 1888 -5677 6695 134 39 11 chr13 90985624 90986837 -10886332 + L1M1 LINE L1 2177 3423 -4142 5419 190 25 20 chr13 90986887 90988109 -10885060 + L1M1 LINE L1 4484 5711 -1854 1172 289 227 21 chr13 90988117 90989373 -10883796 - L1 LINE L1 -2156 3990 2476 * 3998 248 50 17 chr13 90989370 90991517 -10881652 - L1MB8 LINE L1 -1 6177 3969 21 0 0 0 chr13 90991627 90991648 -10881521 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr13 90991705 90991742 -10881427 + AT_rich Low_complexity Low_complexity 1 37 0 319 311 109 56 chr13 90991782 90992515 -10880654 + L1M1 LINE L1 6048 6819 -746 26 50 0 0 chr13 90992588 90992628 -10880541 + AT_rich Low_complexity Low_complexity 1 40 0 206 236 14 69 chr13 90992730 90992802 -10880367 - MIR SINE MIR -70 192 125 1711 124 107 0 chr13 90992811 90993102 -10880067 - L1PA15 LINE L1 -9 6156 5835 1983 90 0 0 chr13 90993107 90993384 -10879785 - L1PA15 LINE L1 -1131 5015 4739 1412 134 26 0 chr13 90993386 90993687 -10879482 - L1PA15 LINE L1 -316 5849 5347 638 293 94 34 chr13 90993680 90993961 -10879208 + L1ME3A LINE L1 5474 5736 -434 * 2681 32 0 0 chr13 90993961 90994269 -10878900 - AluY SINE Alu -3 308 1 638 293 94 34 chr13 90994269 90994609 -10878560 + L1ME3A LINE L1 5736 6162 -8 342 67 0 0 chr13 90995587 90995632 -10877537 + (TG)n Simple_repeat Simple_repeat 2 46 0 1044 159 284 66 chr13 90996236 90996556 -10876613 + MLT1B LTR MaLR 1 390 0 22 80 0 0 chr13 90997734 90997784 -10875385 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr13 90998916 90998939 -10874230 + AT_rich Low_complexity Low_complexity 1 23 0 182 265 0 61 chr13 90999142 90999191 -10873978 - L3 LINE CR1 -29 1548 1503 232 200 0 0 chr13 91001065 91001110 -10872059 + L2 LINE L2 3269 3313 0 28 48 0 0 chr13 91002419 91002461 -10870708 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr13 91002750 91002775 -10870394 + AT_rich Low_complexity Low_complexity 1 25 0 1680 261 129 31 chr13 91003009 91003805 -10869364 - L1MC4a LINE L1 -1 7807 6934 332 307 93 0 chr13 91003993 91004133 -10869036 - L2 LINE L2 0 3313 3161 228 394 48 0 chr13 91004104 91004208 -10868961 - L2 LINE L2 -436 2878 2770 * 313 153 15 46 chr13 91004257 91004388 -10868781 + (TA)n Simple_repeat Simple_repeat 2 128 0 414 339 216 18 chr13 91004395 91004908 -10868261 - L2 LINE L2 -652 2662 2048 801 293 44 4 chr13 91005253 91005482 -10867687 - L2 LINE L2 -1279 2035 1798 833 227 0 0 chr13 91005484 91005647 -10867522 + FRAM SINE Alu 3 165 -11 297 320 48 0 chr13 91006533 91006636 -10866533 + MIR SINE MIR 36 143 -65 186 229 62 0 chr13 91007056 91007104 -10866065 - MIR SINE MIR -116 146 96 247 195 0 0 chr13 91007254 91007295 -10865874 + Tigger5 DNA MER2_type 1 41 -2282 394 193 11 23 chr13 91007320 91007408 -10865761 + Tigger5 DNA MER2_type 2237 2323 0 2319 57 0 13 chr13 91008221 91008521 -10864648 - AluY SINE Alu -15 296 1 311 274 129 33 chr13 91010366 91010607 -10862562 - L1ME4a LINE L1 -75 6046 5783 1981 140 0 7 chr13 91011377 91011677 -10861492 - AluSg SINE Alu -12 298 1 737 229 186 14 chr13 91012405 91012680 -10860489 + L1MC3 LINE L1 7457 7778 -7 22 35 0 0 chr13 91012680 91012709 -10860460 + AT_rich Low_complexity Low_complexity 1 29 0 338 304 130 0 chr13 91012709 91012824 -10860345 + FLAM_A SINE Alu 1 130 -3 566 120 56 0 chr13 91012837 91012945 -10860224 - L1MA9 LINE L1 -1 6311 6198 430 225 36 0 chr13 91012983 91013094 -10860075 + L1MC4 LINE L1 7928 8042 0 268 291 53 40 chr13 91013446 91013597 -10859572 + HAL1 LINE L1 1252 1404 -1103 2881 53 5 5 chr13 91013605 91013979 -10859190 - L1PA7 LINE L1 -6 6148 5775 22 0 0 0 chr13 91014799 91014821 -10858348 + AT_rich Low_complexity Low_complexity 1 22 0 39 0 0 0 chr13 91015341 91015380 -10857789 + AT_rich Low_complexity Low_complexity 1 39 0 226 266 11 32 chr13 91015402 91015496 -10857673 + L1MC4 LINE L1 6612 6703 -1339 253 222 0 0 chr13 91015532 91015586 -10857583 + LTR66 LTR ERVL 394 447 -163 1427 180 18 33 chr13 91015623 91015895 -10857274 - AluJo SINE Alu -44 268 1 24 32 0 0 chr13 91016570 91016601 -10856568 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr13 91016858 91016897 -10856272 + AT_rich Low_complexity Low_complexity 1 39 0 2005 121 3 7 chr13 91017941 91018247 -10854922 + AluSc SINE Alu 5 309 0 21 36 0 0 chr13 91019753 91019781 -10853388 + AT_rich Low_complexity Low_complexity 1 28 0 289 195 11 11 chr13 91019918 91020005 -10853164 + CT-rich Low_complexity Low_complexity 2 88 0 22 35 0 0 chr13 91020988 91021017 -10852152 + AT_rich Low_complexity Low_complexity 1 29 0 255 288 108 7 chr13 91021169 91021308 -10851861 - L1ME LINE L1 -4759 1456 1304 409 317 138 21 chr13 91021319 91021689 -10851480 - L1ME LINE L1 -5076 1129 791 823 237 0 17 chr13 91021746 91021923 -10851246 + MER58A DNA MER1_type 7 180 -44 23 33 0 0 chr13 91022746 91022776 -10850393 + AT_rich Low_complexity Low_complexity 1 30 0 2049 141 67 8 chr13 91023547 91023923 -10849246 - MER48 LTR ERV1 0 398 1 412 258 75 19 chr13 91024356 91024515 -10848654 - MLT1F LTR MaLR -8 534 367 316 298 70 35 chr13 91024546 91024717 -10848452 - MER63A DNA MER1_type -33 177 1 766 304 20 40 chr13 91024735 91025038 -10848131 - L1MC/D LINE L1 -2217 5591 5295 393 284 49 0 chr13 91025165 91025267 -10847902 - MER63A DNA MER1_type 0 210 104 776 226 36 32 chr13 91025321 91025517 -10847652 - L1MC/D LINE L1 -2051 4095 3896 4714 108 16 1 chr13 91025517 91026195 -10846974 - LTR12 LTR ERV1 0 688 1 776 226 36 32 chr13 91026195 91026250 -10846919 - L1MC/D LINE L1 -2250 3896 3843 3030 136 36 34 chr13 91027785 91028390 -10844779 + MER4B LTR ERV1 1 903 0 242 214 43 43 chr13 91028623 91028693 -10844476 + MER117 DNA MER1_type 124 193 -4 311 298 83 36 chr13 91028725 91028893 -10844276 + MIR SINE MIR 16 191 -71 2888 100 0 5 chr13 91028902 91029301 -10843868 + MLT2A1 LTR ERVL 1 397 -47 205 124 41 41 chr13 91029308 91029405 -10843764 + (TA)n Simple_repeat Simple_repeat 1 97 0 282 99 37 25 chr13 91029623 91029704 -10843465 + (TA)n Simple_repeat Simple_repeat 2 83 0 32 79 0 26 chr13 91029717 91029831 -10843338 + AT_rich Low_complexity Low_complexity 1 111 0 278 118 59 0 chr13 91029867 91029918 -10843251 + MLT2A1 LTR ERVL 400 453 0 187 323 0 15 chr13 91029919 91029984 -10843185 + MIR SINE MIR 199 262 0 1771 180 13 38 chr13 91030249 91030622 -10842547 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr13 91031810 91031838 -10841331 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 91032392 91032421 -10840748 + AT_rich Low_complexity Low_complexity 1 29 0 189 132 0 0 chr13 91032454 91032492 -10840677 + (TC)n Simple_repeat Simple_repeat 1 38 0 513 47 0 0 chr13 91032554 91032618 -10840551 + (TG)n Simple_repeat Simple_repeat 2 65 0 249 57 0 0 chr13 91032617 91032652 -10840517 + (CTAG)n Simple_repeat Simple_repeat 1 35 0 * 1950 134 10 0 chr13 91032720 91033025 -10840144 + AluSx SINE Alu 1 308 -4 274 171 13 13 chr13 91033029 91033105 -10840064 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 1819 116 58 4 chr13 91033425 91033700 -10839469 - AluSg SINE Alu -20 290 1 194 128 26 0 chr13 91034553 91034592 -10838577 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 35 63 0 0 chr13 91035057 91035120 -10838049 + AT_rich Low_complexity Low_complexity 1 63 0 22 88 0 0 chr13 91035902 91035959 -10837210 + AT_rich Low_complexity Low_complexity 1 57 0 396 0 0 0 chr13 91036276 91036320 -10836849 + (TA)n Simple_repeat Simple_repeat 2 45 0 2851 6 0 0 chr13 91036320 91036634 -10836535 - AluYb8 SINE Alu -4 314 1 3823 201 79 12 chr13 91036729 91037431 -10835738 - L1PA4 LINE L1 -3 6152 5385 336 312 79 47 chr13 91037692 91038009 -10835160 - L1M4 LINE L1 -3475 2671 2345 308 353 77 63 chr13 91040050 91040464 -10832705 + L2 LINE L2 1988 2407 -907 267 406 28 31 chr13 91040521 91040881 -10832288 + L2 LINE L2 2580 2938 -376 21 0 0 0 chr13 91041050 91041071 -10832098 + AT_rich Low_complexity Low_complexity 1 21 0 1344 215 50 61 chr13 91041215 91041578 -10831591 - MLT1A1 LTR MaLR -6 359 1 24 100 0 0 chr13 91041618 91041698 -10831471 + AT_rich Low_complexity Low_complexity 1 80 0 811 341 40 18 chr13 91042079 91042478 -10830691 - MER90 LTR ERV1 -20 555 148 480 323 26 26 chr13 91042583 91042775 -10830394 + MLT1I LTR MaLR 98 289 -120 988 255 70 61 chr13 91045328 91046002 -10827167 - L1MC5 LINE L1 -36 7925 7246 187 389 89 6 chr13 91046150 91046307 -10826862 - L2 LINE L2 -4 3268 3099 488 318 80 25 chr13 91046823 91047222 -10825947 - MLT1K LTR MaLR 0 588 168 2137 97 3 23 chr13 91047683 91047992 -10825177 - AluSc SINE Alu -6 303 1 551 217 125 0 chr13 91048609 91048761 -10824408 - MER45A DNA AcHobo -5 173 3 3821 113 18 6 chr13 91049524 91050150 -10823019 + L1MA1 LINE L1 5668 6300 -2 25 0 0 0 chr13 91050151 91050176 -10822993 + AT_rich Low_complexity Low_complexity 1 25 0 2328 89 3 3 chr13 91050184 91050488 -10822681 + AluSc SINE Alu 1 304 -5 322 314 151 12 chr13 91051295 91051467 -10821702 - L2 LINE L2 -7 3306 3111 252 269 0 0 chr13 91052368 91052435 -10820734 + (TA)n Simple_repeat Simple_repeat 2 68 0 236 253 66 11 chr13 91052662 91052753 -10820416 - MIR SINE MIR -1 261 166 2758 297 140 34 chr13 91053153 91054955 -10818214 - L2 LINE L2 -548 2766 774 248 317 0 65 chr13 91055893 91056016 -10817153 - MIR SINE MIR -50 212 98 1408 228 120 78 chr13 91056017 91056091 -10817078 - L1MD2 LINE L1 -132 6227 6158 198 0 0 0 chr13 91056091 91056113 -10817056 + (TG)n Simple_repeat Simple_repeat 1 22 0 1408 228 120 78 chr13 91056113 91056307 -10816862 - L1MD2 LINE L1 -201 6158 5974 2033 100 4 0 chr13 91056307 91056588 -10816581 - AluSp SINE Alu -31 282 1 1408 228 120 78 chr13 91056588 91056910 -10816259 - L1MD2 LINE L1 -385 5974 5611 386 315 8 16 chr13 91057063 91057190 -10815979 + MIR SINE MIR 137 262 0 21 36 0 0 chr13 91057996 91058024 -10815145 + AT_rich Low_complexity Low_complexity 1 28 0 458 343 90 33 chr13 91058037 91058404 -10814765 - L2 LINE L2 0 3313 2926 3175 113 4 0 chr13 91058833 91059284 -10813885 + MLT2A2 LTR ERVL 1 453 0 21 36 0 0 chr13 91059299 91059327 -10813842 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr13 91059591 91059637 -10813532 + AT_rich Low_complexity Low_complexity 1 46 0 529 281 24 0 chr13 91059964 91060131 -10813038 + Tigger8 DNA MER2_type 317 487 -179 598 245 6 38 chr13 91060214 91060373 -10812796 + MLT1A2 LTR MaLR 1 154 -220 456 325 0 18 chr13 91060474 91060637 -10812532 + MLT1A2 LTR MaLR 190 349 -41 182 333 0 28 chr13 91061318 91061390 -10811779 + MIR3 SINE MIR 137 206 -2 194 284 196 0 chr13 91061817 91061919 -10811250 + MIR SINE MIR 79 200 -62 2597 182 29 25 chr13 91062112 91062705 -10810464 + L1MA4 LINE L1 5698 6292 -8 1226 26 0 13 chr13 91062714 91062867 -10810302 + L1PA5 LINE L1 6004 6154 0 486 301 61 28 chr13 91063025 91063238 -10809931 + MIR SINE MIR 2 221 -41 23 54 0 0 chr13 91063245 91063282 -10809887 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr13 91063582 91063607 -10809562 + (TG)n Simple_repeat Simple_repeat 2 26 0 929 214 19 8 chr13 91063611 91063857 -10809312 + L1MA6 LINE L1 5682 5913 -265 19903 100 81 7 chr13 91064110 91067381 -10805788 + L1P LINE L1 1462 4974 -1172 1959 155 33 17 chr13 91117797 91118159 -10755010 - THE1C LTR MaLR 0 375 8 284 149 0 15 chr13 91118282 91118349 -10754820 + (TA)n Simple_repeat Simple_repeat 2 67 0 561 194 37 37 chr13 91119025 91119159 -10754010 - FLAM_A SINE Alu -8 134 1 395 350 67 40 chr13 91119328 91119954 -10753215 - L1M4 LINE L1 -746 5400 4758 579 305 23 6 chr13 91120130 91120304 -10752865 + L1MC4a LINE L1 5480 5656 -2152 248 302 163 17 chr13 91120439 91120544 -10752625 + L1MC4a LINE L1 5841 5929 -1879 324 0 0 0 chr13 91120544 91120580 -10752589 + (TA)n Simple_repeat Simple_repeat 2 37 0 248 302 163 17 chr13 91120580 91120769 -10752400 + L1MC4a LINE L1 5929 6178 -1630 464 281 143 21 chr13 91120823 91121181 -10751988 + L1MC4 LINE L1 6563 6893 -915 963 265 101 12 chr13 91121496 91121832 -10751337 - MER57B LTR ERV1 -1 433 68 23 0 0 0 chr13 91122310 91122333 -10750836 + AT_rich Low_complexity Low_complexity 1 23 0 283 200 24 40 chr13 91124357 91124482 -10748687 + (TAA)n Simple_repeat Simple_repeat 3 125 0 2357 79 0 25 chr13 91124855 91125172 -10747997 + AluY SINE Alu 1 309 -2 536 219 168 19 chr13 91128190 91128232 -10744937 + MER58A DNA MER1_type 46 80 -2340 221 83 28 0 chr13 91128232 91128268 -10744901 + (TG)n Simple_repeat Simple_repeat 2 38 0 536 219 168 19 chr13 91128268 91128380 -10744789 + MER58A DNA MER1_type 80 223 -1 266 345 77 44 chr13 91128494 91128654 -10744515 + MIR SINE MIR 32 197 -11 7644 153 18 10 chr13 91129008 91130293 -10742876 + HSMAR2 DNA Mariner 7 1301 -1 307 120 0 0 chr13 91130605 91130655 -10742514 + MADE1 DNA Mariner 31 80 0 24 53 0 0 chr13 91130951 91130989 -10742180 + AT_rich Low_complexity Low_complexity 1 38 0 21 82 0 0 chr13 91131479 91131528 -10741641 + AT_rich Low_complexity Low_complexity 1 49 0 23 92 0 0 chr13 91133590 91133655 -10739514 + AT_rich Low_complexity Low_complexity 1 65 0 723 299 35 24 chr13 91133885 91134173 -10738996 - L1MCb LINE L1 -5754 291 1 5648 209 30 38 chr13 91134271 91135032 -10738137 + L1MC3 LINE L1 6405 7152 -633 2003 84 14 47 chr13 91135032 91135328 -10737841 + AluSc SINE Alu 20 305 -4 5648 209 30 38 chr13 91135328 91135958 -10737211 + L1MC3 LINE L1 7152 7785 0 2437 68 0 0 chr13 91135962 91136273 -10736896 + AluY SINE Alu 1 311 0 28 71 0 0 chr13 91137273 91137329 -10735840 + AT_rich Low_complexity Low_complexity 1 56 0 247 221 115 73 chr13 91137387 91137536 -10735633 + L1ME3 LINE L1 6007 6160 -10 2048 128 12 6 chr13 91137600 91137927 -10735242 - L1PA11 LINE L1 0 6174 5846 322 228 92 65 chr13 91137967 91138151 -10735018 + L1M4 LINE L1 2314 2502 -3644 356 285 64 85 chr13 91139317 91139612 -10733557 + LTR16A1 LTR ERVL 10 298 -159 21 0 0 0 chr13 91140287 91140308 -10732861 + AT_rich Low_complexity Low_complexity 1 21 0 1923 145 26 54 chr13 91140705 91141091 -10732078 - THE1C LTR MaLR 0 375 1 240 210 37 0 chr13 91141093 91141174 -10731995 + GA-rich Low_complexity Low_complexity 1 84 0 25 31 0 0 chr13 91141951 91141983 -10731186 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr13 91142277 91142300 -10730869 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr13 91142783 91142819 -10730350 + AT_rich Low_complexity Low_complexity 1 36 0 2047 118 10 0 chr13 91143425 91143714 -10729455 + AluSg SINE Alu 1 292 -18 5403 157 6 12 chr13 91143764 91144738 -10728431 - L1PA11 LINE L1 -1275 4871 3904 6106 97 12 23 chr13 91144739 91146059 -10727110 + L1PA11 LINE L1 4861 6174 0 25 31 0 0 chr13 91146834 91146866 -10726303 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 91147673 91147701 -10725468 + AT_rich Low_complexity Low_complexity 1 28 0 6594 145 57 4 chr13 91147727 91148889 -10724280 + Tigger3b DNA MER2_type 9 1231 0 451 295 100 58 chr13 91149113 91149990 -10723179 - L1MC4 LINE L1 -141 7901 6988 464 207 44 37 chr13 91150028 91150163 -10723006 - L1MC4 LINE L1 -1193 6849 6714 1162 306 85 41 chr13 91150524 91151208 -10721961 - ERVL LTR ERVL -2944 2820 2107 25 51 0 0 chr13 91155857 91155896 -10717273 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr13 91155932 91155969 -10717200 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr13 91156063 91156104 -10717065 + AT_rich Low_complexity Low_complexity 1 41 0 267 341 0 12 chr13 91156104 91156186 -10716983 - LTR16C LTR ERVL -126 365 285 909 213 50 5 chr13 91158390 91158611 -10714558 + L1M4 LINE L1 1168 1398 -5144 1334 235 43 17 chr13 91158624 91159041 -10714128 + L1MB7 LINE L1 5757 6184 0 312 348 124 3 chr13 91159830 91160036 -10713133 - MIR3 SINE MIR -22 240 15 1473 114 0 27 chr13 91161422 91161642 -10711527 + THE1C LTR MaLR 1 214 -161 2677 142 83 8 chr13 91161642 91162122 -10711047 - LTR1 LTR ERV1 0 785 270 2154 81 0 0 chr13 91163738 91164011 -10709158 - AluSg SINE Alu -17 293 21 387 231 200 8 chr13 91164455 91164585 -10708584 - MER110A LTR ERV1 -229 239 85 345 338 29 22 chr13 91164890 91165029 -10708140 - MIR SINE MIR -115 147 8 1971 114 45 0 chr13 91165169 91165459 -10707710 + AluSg1 SINE Alu 1 303 -6 572 304 80 22 chr13 91165840 91166376 -10706793 - L1MEd LINE L1 -1312 4817 4251 55 16 0 0 chr13 91166418 91166480 -10706689 + AT_rich Low_complexity Low_complexity 1 62 0 284 18 0 70 chr13 91166704 91166761 -10706408 + (CTAGT)n Simple_repeat Simple_repeat 3 55 0 467 315 73 60 chr13 91166803 91168126 -10705043 - L1MEd LINE L1 -2079 4050 2712 743 271 19 23 chr13 91168132 91168346 -10704823 - MER20 DNA MER1_type -6 213 1 304 228 0 0 chr13 91168901 91168958 -10704211 - L1MC4 LINE L1 -1334 6708 6652 183 164 14 27 chr13 91168983 91169056 -10704113 + (TA)n Simple_repeat Simple_repeat 2 73 0 394 320 60 55 chr13 91169098 91169517 -10703652 - L1MEd LINE L1 -4910 1209 789 648 118 0 0 chr13 91169559 91169652 -10703517 + AluSg/x SINE Alu 202 294 -15 27 29 0 0 chr13 91169653 91169687 -10703482 + AT_rich Low_complexity Low_complexity 1 34 0 2454 37 37 0 chr13 91170139 91170439 -10702730 - AluY SINE Alu 0 311 1 21 0 0 0 chr13 91170483 91170504 -10702665 + AT_rich Low_complexity Low_complexity 1 21 0 462 100 0 0 chr13 91172365 91172435 -10700734 - AluSp/q SINE Alu -16 297 228 21 36 0 0 chr13 91172928 91172956 -10700213 + AT_rich Low_complexity Low_complexity 1 28 0 3060 211 52 9 chr13 91175677 91176412 -10696757 - L1MB8 LINE L1 -8 6170 5405 375 338 88 34 chr13 91176479 91176799 -10696370 - L2 LINE L2 -123 3190 2854 200 338 12 0 chr13 91176807 91176887 -10696282 + MIR SINE MIR 182 262 0 22 0 0 0 chr13 91176995 91177017 -10696152 + AT_rich Low_complexity Low_complexity 1 22 0 187 250 176 0 chr13 91177856 91177924 -10695245 + MIR SINE MIR 104 183 -79 333 333 237 18 chr13 91178108 91178505 -10694664 + L2 LINE L2 2830 3313 0 970 91 8 0 chr13 91178609 91178741 -10694428 - AluSg SINE Alu -177 133 1 342 242 204 8 chr13 91178841 91178973 -10694196 + MER5A DNA MER1_type 26 183 -6 4755 32 0 2 chr13 91179165 91179752 -10693417 + L1PA3 LINE L1 1968 2553 -3593 4707 43 0 0 chr13 91179750 91180356 -10692813 + L1PA3 LINE L1 2969 3574 -2572 * 14725 29 1 0 chr13 91180456 91182981 -10690188 + L1PA3 LINE L1 3626 6152 -3 590 246 29 29 chr13 91184004 91184179 -10688990 - MER20 DNA MER1_type -40 179 5 24 22 0 43 chr13 91184217 91184246 -10688923 + AT_rich Low_complexity Low_complexity 1 29 -15 2573 29 7 0 chr13 91184246 91184552 -10688617 - AluY SINE Alu -3 308 1 24 22 0 43 chr13 91184552 91184568 -10688601 + AT_rich Low_complexity Low_complexity 29 44 0 237 346 152 21 chr13 91185129 91185464 -10687705 + L2 LINE L2 2597 2975 -339 307 71 0 0 chr13 91185681 91185723 -10687446 - AluY SINE Alu -204 97 56 6036 160 50 11 chr13 91190464 91191648 -10681521 - Tigger3b DNA MER2_type 0 1231 2 220 268 28 0 chr13 91191648 91191719 -10681450 + (TA)n Simple_repeat Simple_repeat 1 73 0 213 333 121 0 chr13 91192646 91192745 -10680424 + L2 LINE L2 3154 3264 -8 402 179 34 26 chr13 91194047 91194164 -10679005 - MER96B DNA MER1_type? -260 157 40 21 57 0 0 chr13 91194198 91194233 -10678936 + AT_rich Low_complexity Low_complexity 1 35 0 29 78 0 0 chr13 91194360 91194424 -10678745 + AT_rich Low_complexity Low_complexity 1 64 0 225 0 0 0 chr13 91195685 91195710 -10677459 + (A)n Simple_repeat Simple_repeat 1 25 0 374 327 147 6 chr13 91197602 91197758 -10675411 + MER5A DNA MER1_type 9 186 -3 217 203 0 27 chr13 91198578 91198652 -10674517 + CT-rich Low_complexity Low_complexity 1 72 0 207 158 0 70 chr13 91198672 91198729 -10674440 + CT-rich Low_complexity Low_complexity 3 55 0 24 77 0 0 chr13 91199765 91199817 -10673352 + AT_rich Low_complexity Low_complexity 1 52 0 2459 104 13 11 chr13 91200182 91200556 -10672613 - THE1C LTR MaLR 0 375 1 389 297 59 49 chr13 91200559 91200763 -10672406 - MIR SINE MIR -38 224 20 207 221 29 15 chr13 91201454 91201522 -10671647 + (TTCA)n Simple_repeat Simple_repeat 1 69 0 252 281 0 0 chr13 91202476 91202565 -10670604 + (TG)n Simple_repeat Simple_repeat 2 90 0 7867 62 4 2 chr13 91204523 91206317 -10666852 - L1PA5 LINE L1 -6 6148 4353 29 47 0 0 chr13 91207934 91207977 -10665192 + AT_rich Low_complexity Low_complexity 1 43 0 710 215 17 17 chr13 91208575 91208747 -10664422 + LTR40a LTR ERVL 20 191 -328 2583 39 0 0 chr13 91209076 91209382 -10663787 + AluY SINE Alu 1 306 -5 1902 92 43 3 chr13 91209578 91209904 -10663265 + Tigger3(Golem) DNA MER2_type 2241 2579 -450 2151 102 49 35 chr13 91209907 91210251 -10662918 - THE1B LTR MaLR -2 362 14 1719 206 60 25 chr13 91210263 91210695 -10662474 + Tigger3(Golem) DNA MER2_type 2582 3028 -1 205 268 56 14 chr13 91210699 91210770 -10662399 + L2 LINE L2 2714 2787 -527 752 285 95 33 chr13 91210901 91211637 -10661532 + L2 LINE L2 2452 3232 -81 189 336 84 34 chr13 91211722 91211841 -10661328 + L2 LINE L2 2957 3081 -191 449 136 291 0 chr13 91212010 91212120 -10661049 - MER53 DNA DNA 0 189 48 26 50 0 0 chr13 91212317 91212357 -10660812 + AT_rich Low_complexity Low_complexity 1 40 0 1340 207 79 14 chr13 91212489 91212842 -10660327 - L1MD3 LINE L1 0 7995 7620 1333 181 27 4 chr13 91213291 91213551 -10659618 + L1MC/D LINE L1 5426 5691 -653 5436 141 46 5 chr13 91213560 91213910 -10659259 - L1PB1 LINE L1 -8 6859 6525 195 42 0 0 chr13 91213910 91213934 -10659235 + (TA)n Simple_repeat Simple_repeat 2 25 0 5436 141 46 5 chr13 91213934 91214804 -10658365 - L1PB1 LINE L1 -342 6525 5603 5400 28 0 0 chr13 91214795 91215430 -10657739 - L1PA4 LINE L1 -187 5968 5334 * 1566 42 0 0 chr13 91215430 91215620 -10657549 + L1PA4 LINE L1 5962 6152 -3 9380 212 7 12 chr13 91215660 91218413 -10654756 - L1PB1 LINE L1 -1279 5583 2842 6860 177 75 5 chr13 91218409 91220537 -10652632 - L1PB1 LINE L1 -4249 2614 192 * 204 97 0 0 chr13 91221107 91221138 -10652031 + (TG)n Simple_repeat Simple_repeat 2 32 0 1912 194 54 10 chr13 91221347 91221755 -10651414 - MSTB LTR MaLR 0 426 1 287 246 62 117 chr13 91222832 91223072 -10650097 - MLT1K LTR MaLR -171 417 191 25 0 0 0 chr13 91223324 91223349 -10649820 + AT_rich Low_complexity Low_complexity 1 25 0 1911 102 66 7 chr13 91224118 91224426 -10648743 + AluSx SINE Alu 1 312 0 203 262 36 71 chr13 91224462 91224546 -10648623 - L2 LINE L2 -567 2747 2667 266 301 14 0 chr13 91224684 91224757 -10648412 + MER5B DNA MER1_type 105 178 0 372 274 46 29 chr13 91224800 91224975 -10648194 + MER5B DNA MER1_type 1 178 0 180 179 0 0 chr13 91225096 91225135 -10648034 + (TG)n Simple_repeat Simple_repeat 1 39 0 227 339 94 37 chr13 91225138 91225383 -10647786 - L2 LINE L2 -961 2353 2095 24 53 0 0 chr13 91225705 91225743 -10647426 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 91226087 91226117 -10647052 + AT_rich Low_complexity Low_complexity 1 30 0 422 298 183 11 chr13 91226316 91226513 -10646656 + MIR SINE MIR 40 262 0 1038 276 146 23 chr13 91226868 91227300 -10645869 + MLT1D LTR MaLR 21 505 0 181 269 19 19 chr13 91227336 91227388 -10645781 + L2 LINE L2 2999 3050 -263 595 297 130 20 chr13 91227509 91227809 -10645360 + HAL1 LINE L1 1595 1927 -580 425 302 136 16 chr13 91228042 91228300 -10644869 + HAL1 LINE L1 2219 2507 0 22 70 0 0 chr13 91228310 91228353 -10644816 + AT_rich Low_complexity Low_complexity 1 43 0 675 251 38 5 chr13 91228664 91228875 -10644294 + L1MD3 LINE L1 7771 7988 -7 21 36 0 0 chr13 91228960 91228988 -10644181 + AT_rich Low_complexity Low_complexity 1 28 0 319 318 85 10 chr13 91229002 91229203 -10643966 + L1ME3A LINE L1 4882 5097 -1049 2795 187 13 19 chr13 91229457 91229993 -10643176 + L1MA2 LINE L1 17 549 -7016 * 4601 119 35 138 chr13 91229991 91231204 -10641965 + L1MA2 LINE L1 2461 3547 -4018 7941 205 51 37 chr13 91231310 91233843 -10639326 + L1MA2 LINE L1 4078 6751 -814 923 165 82 5 chr13 91233843 91234049 -10639120 - L1 LINE L1 -1784 4362 4141 5444 141 31 7 chr13 91234175 91235163 -10638006 + L1MA2 LINE L1 6710 7719 -4 490 332 91 32 chr13 91235185 91235664 -10637505 + L1ME3A LINE L1 5367 5869 -301 22 35 0 0 chr13 91235993 91236022 -10637147 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr13 91237877 91237898 -10635271 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr13 91238440 91238482 -10634687 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr13 91238805 91238834 -10634335 + AT_rich Low_complexity Low_complexity 1 29 0 265 195 110 123 chr13 91239212 91239366 -10633803 - LTR1 LTR ERV1 -431 354 203 * 1168 184 27 12 chr13 91239342 91239598 -10633571 - LTR1 LTR ERV1 -514 271 12 1111 133 16 25 chr13 91239572 91239774 -10633395 + THE1C LTR MaLR 199 375 0 * 29 70 0 0 chr13 91240002 91240059 -10633110 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr13 91240281 91240317 -10632852 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr13 91240624 91240652 -10632517 + AT_rich Low_complexity Low_complexity 1 28 0 212 319 11 0 chr13 91240707 91240798 -10632371 + (TA)n Simple_repeat Simple_repeat 2 93 0 22 56 0 0 chr13 91240928 91240964 -10632205 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr13 91241574 91241595 -10631574 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 976 231 51 37 chr13 91241744 91242038 -10631131 + ERVL LTR ERVL 3669 3966 -1798 * 1240 295 30 31 chr13 91242036 91242889 -10630280 + ERVL LTR ERVL 4286 5180 -584 761 281 27 26 chr13 91242985 91243388 -10629781 + MLT2E LTR ERVL 183 628 0 188 67 33 0 chr13 91243869 91243899 -10629270 + (TG)n Simple_repeat Simple_repeat 1 31 0 1915 125 3 39 chr13 91244089 91244401 -10628768 - AluSx SINE Alu -11 301 1 1292 154 21 13 chr13 91244851 91245085 -10628084 - L1PA16 LINE L1 -2 6164 5929 214 182 0 0 chr13 91245243 91245287 -10627882 + A-rich Low_complexity Low_complexity 3 46 0 3119 37 0 3 chr13 91245586 91245965 -10627204 + L1PA5 LINE L1 5777 6154 0 414 0 0 0 chr13 91245967 91246013 -10627156 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 35 0 0 chr13 91246209 91246238 -10626931 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 91246472 91246494 -10626675 + AT_rich Low_complexity Low_complexity 1 22 0 313 203 22 17 chr13 91246672 91246859 -10626310 + (TA)n Simple_repeat Simple_repeat 1 188 0 803 176 0 0 chr13 91246926 91247057 -10626112 - FRAM SINE Alu -26 150 20 342 287 75 78 chr13 91247560 91248026 -10625143 + L1MEd LINE L1 1089 1583 -4727 220 328 0 0 chr13 91248124 91248185 -10624984 + L2 LINE L2 3246 3306 -7 307 324 65 14 chr13 91248251 91248390 -10624779 + Charlie2b DNA MER1_type 1 146 -2636 1008 32 32 0 chr13 91248415 91248539 -10624630 - L1PA5 LINE L1 -6 6148 6021 324 333 65 43 chr13 91248607 91248838 -10624331 + Charlie2b DNA MER1_type 247 482 -2300 323 263 108 36 chr13 91248836 91249030 -10624139 + Charlie2b DNA MER1_type 926 1133 -1649 * 4322 118 22 5 chr13 91249163 91249800 -10623369 + HSMAR1 DNA Mariner 640 1287 0 728 176 7 13 chr13 91249800 91249953 -10623216 - L1M1 LINE L1 -5276 2289 2138 * 7979 188 40 40 chr13 91249936 91250223 -10622946 - L1M1 LINE L1 -5901 1664 1378 1236 222 51 14 chr13 91250223 91250498 -10622671 + AluJo SINE Alu 2 286 -16 7979 188 40 40 chr13 91250498 91251863 -10621306 - L1M1 LINE L1 -6186 1379 12 526 220 19 37 chr13 91251866 91252080 -10621089 - L1ME LINE L1 -680 5482 5273 28 29 0 0 chr13 91252095 91252130 -10621039 + AT_rich Low_complexity Low_complexity 1 35 0 2324 88 0 7 chr13 91252315 91252623 -10620546 - AluY SINE Alu -5 306 1 870 273 66 34 chr13 91252690 91253130 -10620039 - L1ME LINE L1 -1209 4937 4484 1642 163 54 6 chr13 91256466 91256798 -10616371 - L1MCa LINE L1 -5257 1169 822 1645 185 54 3 chr13 91256827 91257124 -10616045 - AluJb SINE Alu 0 312 1 1232 203 32 92 chr13 91257131 91257511 -10615658 - MLT1A1 LTR MaLR 0 365 9 3439 187 42 67 chr13 91257517 91258341 -10614828 - L1MCa LINE L1 -5601 825 22 486 257 171 0 chr13 91258637 91258789 -10614380 + MER5A DNA MER1_type 12 189 0 356 311 0 8 chr13 91259610 91259732 -10613437 + (TATATG)n Simple_repeat Simple_repeat 3 123 0 643 233 78 44 chr13 91260170 91260376 -10612793 + L1MC4 LINE L1 7595 7807 -235 2340 204 13 24 chr13 91260387 91260446 -10612723 - L1MC1 LINE L1 -1 6332 6274 2048 123 7 20 chr13 91260446 91260746 -10612423 + AluSg SINE Alu 1 296 -14 2340 204 13 24 chr13 91260746 91261226 -10611943 - L1MC1 LINE L1 -59 6274 5799 13955 150 29 6 chr13 91261238 91263237 -10609932 + Tigger1 DNA MER2_type 30 2091 -327 1678 181 24 7 chr13 91263237 91263530 -10609639 + AluJo SINE Alu 3 300 -12 13955 150 29 6 chr13 91263530 91263866 -10609303 + Tigger1 DNA MER2_type 2091 2418 0 2080 180 14 47 chr13 91263869 91264165 -10609004 - L1MC1 LINE L1 -546 5798 5519 2069 154 3 23 chr13 91264165 91264509 -10608660 - MER1B DNA MER1_type 0 337 1 2080 180 14 47 chr13 91264509 91264639 -10608530 - L1MC1 LINE L1 -825 5519 5386 311 241 109 77 chr13 91264638 91264701 -10608468 + L1MC4 LINE L1 7816 7876 -166 * 246 32 0 0 chr13 91264701 91264732 -10608437 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1800 128 0 54 chr13 91264734 91265030 -10608139 - AluSg SINE Alu -30 280 1 311 241 109 77 chr13 91265030 91265183 -10607986 + L1MC4 LINE L1 7876 8042 0 321 317 82 67 chr13 91267654 91268276 -10604893 - L2 LINE L2 -1 3312 2616 2868 250 9 0 chr13 91268327 91268974 -10604195 - MER82 DNA MER2_type 0 653 1 22 0 0 0 chr13 91269412 91269434 -10603735 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr13 91269612 91269668 -10603501 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr13 91270192 91270224 -10602945 + AT_rich Low_complexity Low_complexity 1 32 0 243 311 55 37 chr13 91270369 91270533 -10602636 + HAL1 LINE L1 2297 2463 -44 653 315 63 24 chr13 91270851 91271184 -10601985 - L2 LINE L2 -502 2812 2467 227 259 0 0 chr13 91271214 91271272 -10601897 - L2 LINE L2 -978 2336 2279 899 239 203 36 chr13 91272841 91273511 -10599658 + Zaphod DNA AcHobo 193 974 -3057 753 274 145 21 chr13 91273532 91273904 -10599265 + Zaphod DNA AcHobo 3614 4031 0 284 276 26 92 chr13 91274918 91275070 -10598099 + MIR SINE MIR 60 201 -61 207 0 0 0 chr13 91275761 91275784 -10597385 + (CA)n Simple_repeat Simple_repeat 1 23 0 1229 200 33 4 chr13 91275881 91276126 -10597043 + AluJo SINE Alu 49 300 -12 466 300 140 61 chr13 91276924 91277380 -10595789 - MLT1L LTR MaLR -15 600 109 2592 35 3 6 chr13 91278335 91278646 -10594523 - AluY SINE Alu -1 310 1 521 344 68 10 chr13 91279397 91279873 -10593296 + HERVL LTR ERVL 2241 2826 -2170 1489 364 56 24 chr13 91280109 91281418 -10591751 + HERVL LTR ERVL 3162 4512 -1252 839 257 110 78 chr13 91282696 91283256 -10589913 - MLT1G1 LTR MaLR -17 578 11 233 333 30 23 chr13 91284056 91284188 -10588981 + L2 LINE L2 2140 2272 -1042 2046 121 60 30 chr13 91284700 91285064 -10588105 + THE1C LTR MaLR 1 375 0 730 103 103 0 chr13 91285649 91285775 -10587394 + MER85 DNA T2_type 1 139 0 7028 45 0 0 chr13 91285800 91286659 -10586510 - L1PA6 LINE L1 0 6154 5296 2241 90 3 35 chr13 91286997 91287309 -10585860 - AluY SINE Alu -9 302 1 1845 188 27 9 chr13 91287594 91287929 -10585240 - MER6 DNA MER2_type -471 394 54 520 361 46 0 chr13 91289605 91289910 -10583259 - L2 LINE L2 -60 3253 2935 470 284 175 0 chr13 91291306 91291489 -10581680 - MIR SINE MIR 0 262 48 426 336 8 0 chr13 91291693 91291827 -10581342 - MIR SINE MIR -90 172 38 25 0 0 0 chr13 91292027 91292052 -10581117 + AT_rich Low_complexity Low_complexity 1 25 0 833 319 90 5 chr13 91292826 91293333 -10579836 + L2 LINE L2 2709 3253 -60 542 153 41 82 chr13 91296023 91296193 -10576976 - MER58D DNA MER1_type 0 386 224 1374 262 34 60 chr13 91296221 91296783 -10576386 - MLT1E2 LTR MaLR 0 626 80 750 233 15 40 chr13 91296860 91296904 -10576265 - MER58D DNA MER1_type -2223 197 153 203 0 37 0 chr13 91296904 91296931 -10576238 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 750 233 15 40 chr13 91296931 91297088 -10576081 - MER58D DNA MER1_type -2267 153 1 2102 133 3 16 chr13 91297191 91297507 -10575662 + AluSx SINE Alu 1 312 0 312 300 58 26 chr13 91297559 91297749 -10575420 + L1ME4a LINE L1 5926 6121 0 360 382 20 0 chr13 91301387 91301539 -10571630 - MIR SINE MIR -88 174 20 246 279 82 16 chr13 91302743 91302865 -10570304 - MER103 DNA DNA -34 132 3 188 287 37 4 chr13 91303525 91303594 -10569575 + MIR SINE MIR 3 72 -136 1607 197 10 78 chr13 91303875 91304287 -10568882 + MLT1B LTR MaLR 1 384 -6 207 0 0 0 chr13 91304672 91304695 -10568474 + (A)n Simple_repeat Simple_repeat 1 23 0 1598 231 30 15 chr13 91305333 91305723 -10567446 - MLT1-int LTR MaLR -703 668 148 3188 109 2 6 chr13 91305723 91306190 -10566979 - L1PA10 LINE L1 -1 6167 5703 1598 231 30 15 chr13 91306190 91306339 -10566830 - MLT1-int LTR MaLR -1223 148 3 240 316 46 40 chr13 91307843 91307995 -10565174 - MIR SINE MIR -17 245 93 312 70 0 0 chr13 91310157 91310200 -10562969 + (TC)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr13 91310759 91310781 -10562388 + AT_rich Low_complexity Low_complexity 1 22 0 2239 55 0 4 chr13 91314212 91314486 -10558683 + AluY SINE Alu 39 311 0 221 116 0 23 chr13 91314886 91314929 -10558240 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 1022 192 50 0 chr13 91315227 91315425 -10557744 + MER2 DNA MER2_type 3 210 -135 292 352 12 34 chr13 91315848 91316012 -10557157 - MIR SINE MIR -51 157 45 1457 120 247 7 chr13 91316162 91316453 -10556716 + MER46B DNA MER2_type 1 236 0 978 93 0 0 chr13 91316671 91316810 -10556359 + (TA)n Simple_repeat Simple_repeat 2 140 0 240 111 0 0 chr13 91316925 91316961 -10556208 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 724 174 5 155 chr13 91317816 91318035 -10555134 + AluJb SINE Alu 102 287 -25 378 0 0 0 chr13 91318114 91318156 -10555013 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 274 0 41 chr13 91318753 91318826 -10554343 + MIR SINE MIR 184 253 -9 181 324 88 27 chr13 91319150 91319298 -10553871 + L2 LINE L2 1638 1794 -1520 2222 110 10 0 chr13 91319299 91319599 -10553570 + AluSx SINE Alu 1 303 -9 1447 208 14 14 chr13 91319605 91319738 -10553431 + AluJb SINE Alu 1 133 -179 206 81 27 0 chr13 91319738 91319775 -10553394 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1447 208 14 14 chr13 91319775 91319929 -10553240 + AluJb SINE Alu 132 288 -24 1356 173 11 29 chr13 91320147 91320425 -10552744 + MLT1B LTR MaLR 117 389 -1 333 311 77 60 chr13 91320460 91320708 -10552461 + L2 LINE L2 2125 2376 -938 774 173 16 145 chr13 91320824 91321079 -10552090 - L1PA16 LINE L1 0 6166 5945 3764 146 20 7 chr13 91321080 91321678 -10551491 + MER41B LTR ERV1 1 606 -29 234 241 0 54 chr13 91321778 91321890 -10551279 + (CCCA)n Simple_repeat Simple_repeat 2 107 0 464 302 122 71 chr13 91321899 91322471 -10550698 + L1M2 LINE L1 714 1262 -5587 209 155 0 52 chr13 91322471 91322529 -10550640 + (CCCA)n Simple_repeat Simple_repeat 3 57 0 27 0 0 0 chr13 91324974 91325001 -10548168 + AT_rich Low_complexity Low_complexity 1 27 0 1913 144 0 7 chr13 91325468 91325786 -10547383 + AluSx SINE Alu 1 316 0 2677 290 62 59 chr13 91326745 91326897 -10546272 - L1MEc LINE L1 -4555 1841 1691 1814 181 0 6 chr13 91326897 91327211 -10545958 + AluJb SINE Alu 1 312 0 2677 290 62 59 chr13 91327211 91327748 -10545421 - L1MEc LINE L1 -4705 1691 1157 2171 102 3 3 chr13 91327748 91328041 -10545128 - AluSx SINE Alu -19 293 1 2677 290 62 59 chr13 91328041 91329152 -10544017 - L1MEc LINE L1 -5239 1157 36 283 170 26 165 chr13 91329152 91329382 -10543787 - LTR41 LTR ERVL -32 741 544 609 225 25 75 chr13 91329540 91329740 -10543429 - LTR41 LTR ERVL -579 194 5 360 304 51 34 chr13 91329742 91329979 -10543190 + L1ME3 LINE L1 5792 6032 -130 32 0 0 0 chr13 91332107 91332139 -10541030 + AT_rich Low_complexity Low_complexity 1 32 0 189 225 25 0 chr13 91332213 91332253 -10540916 + L2 LINE L2 3217 3257 -15 26 50 0 0 chr13 91332263 91332303 -10540866 + AT_rich Low_complexity Low_complexity 1 40 0 2088 121 3 16 chr13 91332318 91332625 -10540544 - AluSx SINE Alu -9 303 1 658 327 109 20 chr13 91332650 91333191 -10539978 - L2 LINE L2 0 3313 2723 400 282 124 76 chr13 91333189 91333480 -10539689 + L2 LINE L2 1242 1546 -1768 * 513 280 83 14 chr13 91333544 91333762 -10539407 - L2 LINE L2 -3080 234 2 259 242 61 15 chr13 91334928 91334994 -10538175 - MER5A DNA MER1_type -3 186 118 818 228 33 27 chr13 91335066 91335250 -10537919 - MER5A DNA MER1_type -3 186 2 2090 134 78 20 chr13 91335330 91335674 -10537495 - THE1B LTR MaLR 0 364 1 845 287 156 15 chr13 91335875 91336415 -10536754 + HAL1b LINE L1 353 968 -380 375 308 87 40 chr13 91336444 91336743 -10536426 + HAL1b LINE L1 1025 1337 -11 2556 199 9 0 chr13 91338442 91338905 -10534264 - MLT1C LTR MaLR 0 467 1 1849 147 77 79 chr13 91339424 91339463 -10533706 - MSTA LTR MaLR 0 428 390 2249 105 7 0 chr13 91339463 91339769 -10533400 + AluSg SINE Alu 1 308 -2 1849 147 77 79 chr13 91339769 91340158 -10533011 - MSTA LTR MaLR -38 390 1 2279 112 0 6 chr13 91341400 91341714 -10531455 - AluSx SINE Alu 0 312 1 435 125 0 0 chr13 91343548 91343620 -10529549 + (TA)n Simple_repeat Simple_repeat 1 72 0 2795 181 64 7 chr13 91344791 91345399 -10527770 - L1MB3 LINE L1 0 6183 5541 22 80 0 0 chr13 91347158 91347208 -10525961 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr13 91347237 91347274 -10525895 + AT_rich Low_complexity Low_complexity 1 37 0 197 299 81 0 chr13 91348156 91348243 -10524926 + MIR3 SINE MIR 104 197 -11 180 375 0 0 chr13 91349161 91349225 -10523944 - L2 LINE L2 -194 3078 3015 359 306 112 29 chr13 91349949 91350155 -10523014 + L2 LINE L2 3048 3270 -43 2204 113 0 3 chr13 91351120 91351420 -10521749 - AluSg SINE Alu -11 299 1 2246 103 0 3 chr13 91353076 91353378 -10519791 + AluSg SINE Alu 1 301 -9 206 216 0 0 chr13 91353378 91353421 -10519748 + T-rich Low_complexity Low_complexity 6 51 0 2576 113 11 3 chr13 91355832 91356203 -10516966 - THE1C LTR MaLR -1 374 1 29 104 0 0 chr13 91356663 91356769 -10516400 + AT_rich Low_complexity Low_complexity 1 106 0 1772 132 45 24 chr13 91356965 91357252 -10515917 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr13 91357252 91357279 -10515890 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr13 91357904 91357936 -10515233 + AT_rich Low_complexity Low_complexity 1 32 0 459 0 0 0 chr13 91359308 91359359 -10513810 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 21 71 0 0 chr13 91359430 91359472 -10513697 + AT_rich Low_complexity Low_complexity 1 42 0 1491 189 0 0 chr13 91360037 91360286 -10512883 - AluSx SINE Alu -63 249 1 24 0 0 0 chr13 91360865 91360889 -10512280 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr13 91360972 91361011 -10512158 + AT_rich Low_complexity Low_complexity 1 39 0 276 30 0 0 chr13 91361349 91361382 -10511787 + (CA)n Simple_repeat Simple_repeat 1 33 0 315 0 0 0 chr13 91361413 91361448 -10511721 + (CA)n Simple_repeat Simple_repeat 2 36 0 317 313 40 0 chr13 91363457 91363556 -10509613 - L1MC4 LINE L1 -1326 6716 6614 * 347 250 0 22 chr13 91363504 91363596 -10509573 + L1MC4 LINE L1 6614 6703 -1339 327 314 20 0 chr13 91363580 91363682 -10509487 - L1MC4 LINE L1 -1339 6703 6600 * 913 200 0 17 chr13 91363784 91363964 -10509205 + FRAM SINE Alu 1 176 0 21 36 0 0 chr13 91364085 91364113 -10509056 + AT_rich Low_complexity Low_complexity 1 28 0 1676 150 3 105 chr13 91364447 91364808 -10508361 + MER1B DNA MER1_type 1 324 -15 24 0 0 0 chr13 91365785 91365809 -10507360 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr13 91366676 91366713 -10506456 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr13 91367108 91367136 -10506033 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr13 91367816 91367845 -10505324 + AT_rich Low_complexity Low_complexity 1 29 0 348 206 14 0 chr13 91368643 91368716 -10504453 - MER116 DNA Mariner -5 75 2 486 311 38 16 chr13 91368752 91368935 -10504234 + MIR SINE MIR 38 224 -38 1891 165 128 8 chr13 91370777 91371159 -10502010 - MSTA LTR MaLR 0 428 1 219 175 25 0 chr13 91371216 91371256 -10501913 + GA-rich Low_complexity Low_complexity 3 43 0 707 268 107 68 chr13 91371286 91371849 -10501320 - MLT1E LTR MaLR -8 585 1 21 0 0 0 chr13 91372123 91372144 -10501025 + AT_rich Low_complexity Low_complexity 1 21 0 2077 136 3 0 chr13 91373126 91373421 -10499748 + AluSg SINE Alu 1 296 -14 31 0 0 0 chr13 91374766 91374797 -10498372 + AT_rich Low_complexity Low_complexity 1 31 0 1017 183 41 26 chr13 91375676 91375944 -10497225 - L1 LINE L1 -1765 4381 4110 1033 204 18 9 chr13 91376034 91376301 -10496868 - L1 LINE L1 -2039 4107 3823 3888 192 14 18 chr13 91376301 91377150 -10496019 + L1 LINE L1 4370 5215 -931 735 169 63 5 chr13 91377156 91377345 -10495824 + L1MA9 LINE L1 6112 6311 -1 634 173 181 0 chr13 91378230 91378357 -10494812 + LTR29-int LTR ERV1 480 629 -5702 * 1718 201 124 44 chr13 91378355 91378915 -10494254 + LTR29-int LTR ERV1 753 1399 -4932 1250 170 37 48 chr13 91379025 91379319 -10493850 + LTR29-int LTR ERV1 1372 1662 -4669 580 255 36 41 chr13 91379401 91379597 -10493572 + LTR29-int LTR ERV1 1517 1711 -4887 2216 185 24 58 chr13 91379705 91380295 -10492874 + LTR29-int LTR ERV1 2706 3275 -3056 9126 163 37 66 chr13 91380328 91382535 -10490634 + LTR29-int LTR ERV1 3640 5783 -548 318 304 74 34 chr13 91382526 91382674 -10490495 + LTR29-int LTR ERV1 4547 4700 -236 * 291 200 0 17 chr13 91382649 91382709 -10490460 + LTR29-int LTR ERV1 5960 6018 -313 * 300 222 0 0 chr13 91382890 91382953 -10490216 + LTR29 LTR ERV1 2 64 -558 467 196 62 0 chr13 91383481 91383578 -10489591 + LTR26B LTR ERV1 1 103 -428 189 107 0 0 chr13 91383803 91383831 -10489338 + (CA)n Simple_repeat Simple_repeat 2 29 0 2419 178 2 2 chr13 91383851 91384251 -10488918 + LTR26B LTR ERV1 121 520 -11 1206 213 102 48 chr13 91384313 91384343 -10488826 + LTR48B LTR ERV1 1 28 -616 2919 172 43 75 chr13 91384343 91385094 -10488075 - LTR8A LTR ERV1 0 727 1 1206 213 102 48 chr13 91385094 91385651 -10487518 + LTR48B LTR ERV1 28 644 0 851 243 28 0 chr13 91385732 91385909 -10487260 + MER20 DNA MER1_type 31 212 -7 4890 51 0 0 chr13 91387011 91387602 -10485567 - LTR10C LTR ERV1 0 591 1 2542 134 5 43 chr13 91387718 91388159 -10485010 + MSTB LTR MaLR 1 424 -2 3178 189 6 54 chr13 91388162 91388539 -10484630 + MSTB-int LTR MaLR 2 331 -1320 1598 26 0 0 chr13 91388539 91388729 -10484440 - L1PA4 LINE L1 -3 6152 5963 3178 189 6 54 chr13 91388729 91389054 -10484115 + MSTB-int LTR MaLR 331 670 -981 3840 154 61 32 chr13 91389071 91389825 -10483344 - LTR1 LTR ERV1 0 785 10 5489 183 9 3 chr13 91389836 91390798 -10482371 + MSTB-int LTR MaLR 684 1651 0 2224 141 52 54 chr13 91390798 91391225 -10481944 + MSTB LTR MaLR 1 426 0 1497 196 56 20 chr13 91391310 91391845 -10481324 - LTR48 LTR ERV1 0 644 1 226 274 0 0 chr13 91392084 91392135 -10481034 - L2 LINE L2 -21 3251 3201 237 206 0 0 chr13 91392139 91392207 -10480962 - L1MC4 LINE L1 -1338 6704 6637 3258 128 8 19 chr13 91392623 91393155 -10480014 - L1PB3 LINE L1 -8 6146 5621 238 324 0 0 chr13 91393885 91393953 -10479216 - MIR3 SINE MIR -24 184 117 294 29 0 0 chr13 91394655 91394690 -10478479 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr13 91395468 91395491 -10477678 + AT_rich Low_complexity Low_complexity 1 23 0 401 289 155 30 chr13 91395760 91395992 -10477177 - MIR SINE MIR 0 262 2 489 281 23 86 chr13 91396034 91396290 -10476879 + MIR SINE MIR 14 253 -9 228 233 22 78 chr13 91396609 91396699 -10476470 - L1MC4a LINE L1 -529 7279 7195 2393 199 60 36 chr13 91396727 91397364 -10475805 + L1MC3 LINE L1 7133 7784 -1 1438 132 119 0 chr13 91397662 91397881 -10475288 - AluSq SINE Alu -68 245 1 250 314 0 0 chr13 91398352 91398422 -10474747 - MIR SINE MIR -65 143 74 29 28 0 0 chr13 91398524 91398560 -10474609 + AT_rich Low_complexity Low_complexity 1 36 0 461 348 62 19 chr13 91399247 91399506 -10473663 + L2 LINE L2 504 773 -2541 739 281 130 10 chr13 91399508 91399807 -10473362 + L2 LINE L2 2578 2912 -402 391 246 95 34 chr13 91399959 91400138 -10473031 + L2 LINE L2 3107 3296 -17 2031 131 10 3 chr13 91400146 91400436 -10472733 + AluSg SINE Alu 2 293 -17 351 0 0 0 chr13 91402232 91402271 -10470898 + (CA)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr13 91402632 91402667 -10470502 + AT_rich Low_complexity Low_complexity 1 35 0 1947 134 0 27 chr13 91404358 91404691 -10468478 + AluSx SINE Alu 1 325 0 23 33 0 0 chr13 91404870 91404900 -10468269 + AT_rich Low_complexity Low_complexity 1 30 0 278 255 161 7 chr13 91406347 91406496 -10466673 + L1MC5 LINE L1 7754 7925 -36 452 346 61 14 chr13 91406661 91406875 -10466294 + MIR SINE MIR 34 257 -5 2488 47 0 0 chr13 91407410 91407706 -10465463 - AluY SINE Alu -15 296 1 26 30 0 0 chr13 91408569 91408602 -10464567 + AT_rich Low_complexity Low_complexity 1 33 0 204 300 0 0 chr13 91409057 91409107 -10464062 + MIR SINE MIR 76 125 -83 336 323 93 6 chr13 91409220 91409381 -10463788 + MIR SINE MIR 61 235 -27 1120 181 97 97 chr13 91409433 91409937 -10463232 - MLT1D LTR MaLR -1 504 1 21 0 0 0 chr13 91411404 91411425 -10461744 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr13 91411643 91411665 -10461504 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 91411991 91412015 -10461154 + AT_rich Low_complexity Low_complexity 1 24 0 1912 195 74 0 chr13 91412501 91412936 -10460233 - MLT1C LTR MaLR 0 467 1 2077 145 0 6 chr13 91413471 91413782 -10459387 + AluSc SINE Alu 1 309 0 33 103 0 0 chr13 91414090 91414207 -10458962 + AT_rich Low_complexity Low_complexity 1 117 0 81 73 0 0 chr13 91414291 91414456 -10458713 + AT_rich Low_complexity Low_complexity 1 165 0 321 133 100 0 chr13 91414497 91414557 -10458612 + MLT2B1 LTR ERVL 455 520 0 4214 32 8 0 chr13 91415073 91415579 -10457590 - L1P LINE L1 -1557 4589 4080 234 0 0 0 chr13 91415579 91415605 -10457564 + (A)n Simple_repeat Simple_repeat 1 26 0 241 317 88 34 chr13 91416029 91416234 -10456935 - MLT1J LTR MaLR -293 218 3 260 246 0 31 chr13 91419385 91419450 -10453719 + MIR SINE MIR 13 75 -187 * 354 311 52 64 chr13 91419447 91419714 -10453455 - L2 LINE L2 0 3313 3050 317 294 83 73 chr13 91419759 91420181 -10452988 - L2 LINE L2 -415 2899 2403 673 159 35 0 chr13 91420727 91420840 -10452329 - FLAM_C SINE Alu -16 117 1 27 96 0 0 chr13 91421750 91421833 -10451336 + AT_rich Low_complexity Low_complexity 1 83 0 22 0 0 0 chr13 91421924 91421946 -10451223 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr13 91422766 91422795 -10450374 + AT_rich Low_complexity Low_complexity 1 29 0 948 269 100 26 chr13 91422884 91423085 -10450084 + MLT1D LTR MaLR 1 186 -319 375 23 0 0 chr13 91423085 91423129 -10450040 + (CA)n Simple_repeat Simple_repeat 1 44 0 948 269 100 26 chr13 91423129 91423388 -10449781 + MLT1D LTR MaLR 186 495 -10 311 399 66 5 chr13 91423762 91423975 -10449194 + LTR16C LTR ERVL 203 428 -63 366 254 93 44 chr13 91424772 91424977 -10448192 - MER58C DNA MER1_type 0 215 1 674 272 29 6 chr13 91424991 91425164 -10448005 - MER5A DNA MER1_type -5 184 8 501 295 56 91 chr13 91425639 91425978 -10447191 + ERVL LTR ERVL 2067 2393 -3371 1918 109 16 0 chr13 91426859 91427116 -10446053 - AluSg SINE Alu -11 299 39 197 365 103 13 chr13 91427400 91427462 -10445707 + L2 LINE L2 2174 2229 -1085 234 62 0 0 chr13 91427462 91427494 -10445675 + (TTG)n Simple_repeat Simple_repeat 2 33 0 197 365 103 13 chr13 91427494 91427587 -10445582 + L2 LINE L2 2229 2343 -971 341 358 132 19 chr13 91428095 91428740 -10444429 + L2 LINE L2 2346 3067 -205 2215 117 13 0 chr13 91429137 91429445 -10443724 + AluSx SINE Alu 1 312 0 21 36 0 0 chr13 91429667 91429695 -10443474 + AT_rich Low_complexity Low_complexity 1 28 0 301 323 16 0 chr13 91430448 91430575 -10442594 - MARNA DNA Mariner -215 371 243 285 29 0 0 chr13 91431581 91431615 -10441554 + (TG)n Simple_repeat Simple_repeat 1 34 0 649 294 98 17 chr13 91431985 91432281 -10440888 + L2 LINE L2 2056 2375 -939 538 289 114 50 chr13 91432546 91433233 -10439936 + L2 LINE L2 2379 3149 -164 21 0 0 0 chr13 91433320 91433341 -10439828 + AT_rich Low_complexity Low_complexity 1 21 0 303 311 99 31 chr13 91433513 91433735 -10439434 - L1ME LINE L1 -474 5647 5411 22 0 0 0 chr13 91433937 91433959 -10439210 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr13 91434217 91434260 -10438909 + AT_rich Low_complexity Low_complexity 1 43 0 423 0 0 0 chr13 91434305 91434352 -10438817 + (TA)n Simple_repeat Simple_repeat 2 48 0 2151 106 0 7 chr13 91436100 91436393 -10436776 + AluY SINE Alu 1 291 -20 661 267 161 44 chr13 91437554 91438105 -10435064 - L1ME3A LINE L1 -5 6165 5550 202 286 0 0 chr13 91439249 91439298 -10433871 - L2 LINE L2 0 3272 3224 2169 128 3 0 chr13 91439964 91440270 -10432899 + AluSx SINE Alu 4 310 -2 183 290 48 0 chr13 91440439 91440501 -10432668 + MIR3 SINE MIR 14 78 -130 240 143 0 0 chr13 91441609 91441651 -10431518 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr13 91441667 91441689 -10431480 + AT_rich Low_complexity Low_complexity 1 22 0 1409 188 80 19 chr13 91441734 91442048 -10431121 - MLT2C1 LTR ERVL -64 333 1 250 184 26 0 chr13 91443232 91443308 -10429861 + (TA)n Simple_repeat Simple_repeat 1 78 0 1976 144 150 8 chr13 91443721 91444095 -10429074 - MSTA LTR MaLR -1 427 1 184 440 9 0 chr13 91444183 91444299 -10428870 + L2 LINE L2 2744 2860 -454 22 56 0 0 chr13 91445728 91445764 -10427405 + AT_rich Low_complexity Low_complexity 1 36 0 216 304 0 25 chr13 91445874 91445953 -10427216 + GA-rich Low_complexity Low_complexity 4 80 0 * 689 177 11 15 chr13 91445905 91446185 -10426984 + GA-rich Low_complexity Low_complexity 1 278 0 906 288 65 56 chr13 91447835 91448374 -10424795 - MER115 DNA AcHobo 0 693 150 215 174 22 0 chr13 91450745 91450791 -10422378 + (TA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr13 91451119 91451144 -10422025 + AT_rich Low_complexity Low_complexity 1 25 0 279 0 0 0 chr13 91451535 91451566 -10421603 + (A)n Simple_repeat Simple_repeat 1 31 0 2306 92 7 3 chr13 91453100 91453405 -10419764 + AluSc SINE Alu 1 306 -3 2318 72 0 0 chr13 91454459 91454752 -10418417 + AluY SINE Alu 1 293 -18 245 235 0 12 chr13 91455271 91455352 -10417817 + (CA)n Simple_repeat Simple_repeat 1 80 0 315 333 105 13 chr13 91456489 91456642 -10416527 - MIR SINE MIR -17 245 79 321 277 45 39 chr13 91456915 91457070 -10416099 - MIR SINE MIR -34 228 73 21 57 0 0 chr13 91457156 91457191 -10415978 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr13 91457338 91457371 -10415798 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1409 195 14 40 chr13 91457373 91457670 -10415499 - AluJb SINE Alu -23 289 1 23 0 0 0 chr13 91457959 91457982 -10415187 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr13 91458511 91458540 -10414629 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr13 91458820 91458854 -10414315 + (CA)n Simple_repeat Simple_repeat 2 35 0 561 272 89 0 chr13 91460073 91460253 -10412916 + MIR SINE MIR 57 252 -10 574 288 84 27 chr13 91460527 91460876 -10412293 - MER110A LTR ERV1 0 468 143 719 329 38 8 chr13 91461055 91461295 -10411874 + MIR SINE MIR 15 261 -1 327 365 41 12 chr13 91461871 91462041 -10411128 + L2 LINE L2 2564 2738 -576 395 247 195 36 chr13 91462342 91462434 -10410735 - MER69 DNA AcHobo -4 2522 2446 1696 146 97 26 chr13 91462434 91462784 -10410385 + THE1C LTR MaLR 1 375 0 395 247 195 36 chr13 91462784 91462804 -10410365 - MER69 DNA AcHobo -80 2446 2431 1570 133 33 120 chr13 91462804 91463203 -10409966 - THE1B LTR MaLR 0 364 1 395 247 195 36 chr13 91463203 91463531 -10409638 - MER69 DNA AcHobo -95 2431 2011 781 296 84 29 chr13 91463532 91463911 -10409258 - MER69 DNA AcHobo -660 566 167 1494 143 12 12 chr13 91464075 91464320 -10408849 - AluSx SINE Alu -21 291 47 312 230 0 0 chr13 91464845 91464919 -10408250 + MER116 DNA Mariner 7 80 0 274 217 0 0 chr13 91465465 91465534 -10407635 - L1ME4a LINE L1 -2 6119 6051 2289 239 37 7 chr13 91465666 91466255 -10406914 - L1MB8 LINE L1 -2 6176 5570 422 261 41 78 chr13 91466856 91467101 -10406068 + LTR16A LTR ERVL 163 398 -52 1165 257 24 56 chr13 91467216 91467629 -10405540 + MLT1D LTR MaLR 40 439 -66 248 0 31 0 chr13 91470894 91470926 -10402243 + (TA)n Simple_repeat Simple_repeat 2 34 0 124 70 0 0 chr13 91471037 91471280 -10401889 + AT_rich Low_complexity Low_complexity 1 243 0 210 143 0 0 chr13 91471911 91471946 -10401223 + (CA)n Simple_repeat Simple_repeat 1 35 0 27 0 0 0 chr13 91472040 91472067 -10401102 + AT_rich Low_complexity Low_complexity 1 27 0 2103 131 3 0 chr13 91472304 91472609 -10400560 + AluSx SINE Alu 1 306 -6 258 116 0 0 chr13 91472944 91472987 -10400182 + (A)n Simple_repeat Simple_repeat 1 43 0 329 249 59 147 chr13 91473697 91474186 -10398983 + HAL1 LINE L1 1014 1459 -1048 2008 162 18 9 chr13 91475203 91475537 -10397632 - MER1B DNA MER1_type 0 337 1 28 48 0 0 chr13 91475839 91475881 -10397288 + AT_rich Low_complexity Low_complexity 1 42 0 1615 184 0 32 chr13 91475894 91476209 -10396960 - AluJo SINE Alu -5 307 3 23 54 0 0 chr13 91476539 91476576 -10396593 + AT_rich Low_complexity Low_complexity 1 37 0 326 321 0 67 chr13 91476786 91476920 -10396249 + L2 LINE L2 3147 3271 -1 2279 109 0 3 chr13 91476936 91477247 -10395922 - AluSg SINE Alu 0 310 1 219 288 136 0 chr13 91479377 91479443 -10393726 + L2 LINE L2 3239 3313 0 209 223 53 0 chr13 91480094 91480188 -10392981 + (TAGA)n Simple_repeat Simple_repeat 1 99 0 184 143 98 0 chr13 91480214 91480326 -10392843 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 191 144 90 0 chr13 91480379 91480490 -10392679 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 282 56 0 0 chr13 91480993 91481029 -10392140 + (TG)n Simple_repeat Simple_repeat 1 36 0 1703 236 72 60 chr13 91481087 91481353 -10391816 - MLT1E1 LTR MaLR -2 652 391 1050 112 155 39 chr13 91481353 91481559 -10391610 - MER30 DNA MER1_type 0 230 1 1703 236 72 60 chr13 91481559 91481890 -10391279 - MLT1E1 LTR MaLR -263 391 48 2078 128 0 0 chr13 91481941 91482230 -10390939 + AluSx SINE Alu 1 289 -23 302 364 8 8 chr13 91482631 91482749 -10390420 + MER5A DNA MER1_type 9 126 -63 24 0 0 0 chr13 91483376 91483400 -10389769 + AT_rich Low_complexity Low_complexity 1 24 0 602 246 128 33 chr13 91483690 91483901 -10389268 + MIR SINE MIR 18 248 -14 23 0 0 0 chr13 91484173 91484196 -10388973 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 91485626 91485649 -10387520 + AT_rich Low_complexity Low_complexity 1 23 0 238 300 40 40 chr13 91485665 91485765 -10387404 - MIR SINE MIR -13 249 150 23 0 0 0 chr13 91487491 91487514 -10385655 + AT_rich Low_complexity Low_complexity 1 23 0 401 301 52 10 chr13 91487530 91487723 -10385446 + HAL1 LINE L1 1443 1643 -864 3292 140 57 58 chr13 91488020 91488655 -10384514 - MER51A LTR ERV1 0 634 1 2981 148 25 4 chr13 91489082 91489569 -10383600 - LOR1a LTR ERV1 0 497 1 240 299 61 34 chr13 91489674 91489821 -10383348 + MIR SINE MIR 85 235 -27 2032 124 9 25 chr13 91489972 91490287 -10382882 - AluSx SINE Alu 0 312 3 1054 181 23 36 chr13 91490492 91490713 -10382456 - MER20 DNA MER1_type -1 218 1 343 365 63 25 chr13 91490788 91491073 -10382096 + LTR67 LTR ERVL 63 358 -199 875 204 16 0 chr13 91491126 91491317 -10381852 - MER105 DNA DNA -5 199 6 665 263 41 0 chr13 91491593 91491764 -10381405 - MER45A DNA AcHobo 0 178 1 27 0 0 0 chr13 91492126 91492153 -10381016 + AT_rich Low_complexity Low_complexity 1 27 0 1999 117 17 3 chr13 91492525 91492816 -10380353 + AluSq SINE Alu 1 295 -18 321 68 0 0 chr13 91493439 91493483 -10379686 + (CA)n Simple_repeat Simple_repeat 2 45 0 288 130 43 0 chr13 91493508 91493577 -10379592 + (TA)n Simple_repeat Simple_repeat 1 72 0 257 211 178 22 chr13 91493942 91494032 -10379137 + MER7A DNA MER2_type 26 127 -219 1506 173 8 4 chr13 91494074 91494329 -10378840 + MER7A DNA MER2_type 80 335 -1 188 250 16 0 chr13 91494519 91494583 -10378586 + (TA)n Simple_repeat Simple_repeat 1 65 0 250 163 35 23 chr13 91496886 91496972 -10376197 + CT-rich Low_complexity Low_complexity 2 88 0 30 0 0 0 chr13 91497164 91497194 -10375975 + AT_rich Low_complexity Low_complexity 1 30 0 1732 133 0 0 chr13 91497300 91497604 -10375565 - AluSq SINE Alu 0 333 30 2175 98 0 10 chr13 91497735 91498031 -10375138 - AluSx SINE Alu -17 295 3 3510 160 92 35 chr13 91498210 91498991 -10374178 - LTR1B LTR ERV1 0 826 1 332 259 77 24 chr13 91499106 91499276 -10373893 + L1ME4a LINE L1 5940 6118 -3 24 0 0 0 chr13 91499616 91499640 -10373529 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 91500206 91500227 -10372942 + AT_rich Low_complexity Low_complexity 1 21 0 6100 57 3 5 chr13 91500439 91501212 -10371957 + L1PA7 LINE L1 5384 6154 0 900 241 122 0 chr13 91501547 91501891 -10371278 - LTR37A LTR ERV1 -2 424 39 409 246 225 7 chr13 91505645 91505787 -10367382 + MER5A DNA MER1_type 11 183 -6 204 40 0 0 chr13 91506817 91506842 -10366327 + (TA)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr13 91506886 91506911 -10366258 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 309 12 12 chr13 91508940 91509021 -10364148 + GA-rich Low_complexity Low_complexity 5 85 0 294 385 20 7 chr13 91512144 91512292 -10360877 + MIR SINE MIR 11 160 -102 286 294 130 0 chr13 91512806 91512898 -10360271 - MER69 DNA AcHobo -1122 104 1 522 172 83 7 chr13 91513102 91513247 -10359922 - MER69 DNA AcHobo -197 2329 2174 32 0 0 0 chr13 91513352 91513384 -10359785 + AT_rich Low_complexity Low_complexity 1 32 0 302 231 42 77 chr13 91513888 91514031 -10359138 + HAL1 LINE L1 12 149 -2358 205 196 22 0 chr13 91517722 91517768 -10355401 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 163 0 0 chr13 91518902 91518945 -10354224 + (TG)n Simple_repeat Simple_repeat 2 44 0 842 301 90 46 chr13 91519197 91519926 -10353243 + L2 LINE L2 2415 3179 -134 21 0 0 0 chr13 91520435 91520456 -10352713 + AT_rich Low_complexity Low_complexity 1 21 0 2863 128 9 18 chr13 91520646 91521100 -10352069 + L1PA16 LINE L1 5708 6157 -9 289 360 8 16 chr13 91521644 91521769 -10351400 - L2 LINE L2 -28 3285 3162 25 31 0 0 chr13 91522500 91522532 -10350637 + AT_rich Low_complexity Low_complexity 1 32 0 330 263 20 0 chr13 91523187 91523286 -10349883 + MIR SINE MIR 137 237 -25 216 100 17 33 chr13 91523407 91523467 -10349702 + (TA)n Simple_repeat Simple_repeat 1 59 0 765 305 95 37 chr13 91523734 91524144 -10349025 + MLT1J1 LTR MaLR 3 436 -10 2175 111 3 13 chr13 91524149 91524456 -10348713 - AluSx SINE Alu -3 309 6 24 0 0 0 chr13 91525219 91525243 -10347926 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr13 91526270 91526295 -10346874 + AT_rich Low_complexity Low_complexity 1 25 0 188 0 74 0 chr13 91527117 91527144 -10346025 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 387 41 0 0 chr13 91528267 91528316 -10344853 + (CA)n Simple_repeat Simple_repeat 2 50 0 1756 156 53 6 chr13 91528485 91528824 -10344345 - MSTA LTR MaLR -71 357 3 1655 230 92 37 chr13 91528824 91529367 -10343802 - MLT1E3 LTR MaLR -51 573 1 982 153 0 0 chr13 91530243 91530393 -10342776 - FRAM SINE Alu -27 149 1 204 226 19 0 chr13 91531149 91531202 -10341967 + (CA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr13 91531945 91531966 -10341203 + AT_rich Low_complexity Low_complexity 1 21 0 468 136 0 12 chr13 91532175 91532256 -10340913 - MADE1 DNA Mariner 0 80 1 2546 43 0 7 chr13 91532848 91533149 -10340020 - AluY SINE Alu -12 299 1 21 0 0 0 chr13 91534058 91534079 -10339090 + AT_rich Low_complexity Low_complexity 1 21 0 264 299 0 0 chr13 91534602 91534669 -10338500 - MIR3 SINE MIR -31 177 111 224 303 40 0 chr13 91535465 91535541 -10337628 + L2 LINE L2 3220 3298 -15 341 22 22 0 chr13 91537214 91537260 -10335909 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2194 86 4 0 chr13 91537262 91537540 -10335629 - AluSx SINE Alu -31 281 3 2077 147 6 18 chr13 91537646 91537987 -10335182 + MER1B DNA MER1_type 1 337 0 219 242 0 0 chr13 91538013 91538112 -10335057 + (TG)n Simple_repeat Simple_repeat 2 100 0 317 311 0 0 chr13 91538145 91538264 -10334905 + (TG)n Simple_repeat Simple_repeat 2 120 0 329 254 5 2 chr13 91538291 91538712 -10334457 + (TG)n Simple_repeat Simple_repeat 1 422 0 21 0 0 0 chr13 91539830 91539851 -10333318 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr13 91540414 91540444 -10332725 + (T)n Simple_repeat Simple_repeat 1 30 0 204 40 0 0 chr13 91540904 91540929 -10332240 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 339 355 106 11 chr13 91541038 91541227 -10331942 - MIR SINE MIR -15 247 41 1880 100 0 15 chr13 91541555 91541815 -10331354 + AluSg1 SINE Alu 40 295 -14 5923 165 8 8 chr13 91542539 91544336 -10328833 + L1PA14 LINE L1 4209 5957 -197 1994 127 3 0 chr13 91544362 91544676 -10328493 + L1PA14 LINE L1 5844 6158 -3 24 0 0 0 chr13 91545301 91545325 -10327844 + AT_rich Low_complexity Low_complexity 1 24 0 312 27 0 0 chr13 91545375 91545412 -10327757 + (CA)n Simple_repeat Simple_repeat 2 38 0 412 283 62 78 chr13 91545880 91546138 -10327031 - MIR SINE MIR 0 262 9 203 304 76 32 chr13 91546516 91546811 -10326358 - L2 LINE L2 -333 2980 2637 2093 128 20 0 chr13 91548096 91548400 -10324769 - AluSx SINE Alu 0 312 3 21 36 0 0 chr13 91548982 91549010 -10324159 + AT_rich Low_complexity Low_complexity 1 28 0 1959 211 60 16 chr13 91549458 91549942 -10323227 + MLT1D LTR MaLR 1 505 0 1974 103 0 0 chr13 91551900 91552190 -10320979 - AluSx SINE Alu 0 320 31 188 321 67 45 chr13 91552511 91552645 -10320524 + MIR3 SINE MIR 32 168 -40 286 339 25 0 chr13 91552677 91552795 -10320374 + L2 LINE L2 2574 2694 -620 1015 90 8 0 chr13 91553436 91553570 -10319599 + AluSq/x SINE Alu 1 135 -177 1702 168 7 3 chr13 91553570 91553855 -10319314 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr13 91553855 91553880 -10319289 + AT_rich Low_complexity Low_complexity 1 25 0 2712 178 21 54 chr13 91553922 91554552 -10318617 + L1MC1 LINE L1 5725 6333 0 269 182 0 0 chr13 91556204 91556248 -10316921 - 5S rRNA rRNA -76 45 2 1862 179 5 67 chr13 91556336 91556727 -10316442 + MLT1B LTR MaLR 24 390 0 1117 209 8 0 chr13 91557774 91558008 -10315161 - L1 LINE L1 -3241 2905 2670 * 1228 80 0 0 chr13 91558004 91558166 -10315003 + L1MA1 LINE L1 6115 6276 -26 23 33 0 0 chr13 91558330 91558360 -10314809 + AT_rich Low_complexity Low_complexity 1 30 0 3408 210 36 48 chr13 91559013 91559243 -10313926 - L1MB1 LINE L1 -5 7803 7572 960 192 20 24 chr13 91559243 91559498 -10313671 - L1MA10 LINE L1 -11 6323 6070 3408 210 36 48 chr13 91559498 91559882 -10313287 - L1MB1 LINE L1 -236 7572 7185 354 23 0 0 chr13 91559882 91559925 -10313244 + (TC)n Simple_repeat Simple_repeat 2 44 0 3408 210 36 48 chr13 91559925 91560672 -10312497 - L1MB1 LINE L1 -623 7185 5054 623 344 43 27 chr13 91560935 91561264 -10311905 - L3 LINE CR1 -2 1575 1242 23 0 0 0 chr13 91562382 91562405 -10310764 + AT_rich Low_complexity Low_complexity 1 23 0 1317 119 0 0 chr13 91563330 91563539 -10309630 + AluY SINE Alu 127 335 0 2300 138 15 77 chr13 91563724 91564180 -10308989 + MSTA LTR MaLR 1 428 0 522 304 185 19 chr13 91564180 91564493 -10308676 + L2 LINE L2 2945 3309 -4 261 0 0 0 chr13 91565204 91565233 -10307936 + (A)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr13 91565866 91565890 -10307279 + AT_rich Low_complexity Low_complexity 1 24 0 1208 236 122 33 chr13 91565939 91566205 -10306964 - MLT1D LTR MaLR -4 501 260 2246 115 3 6 chr13 91566205 91566517 -10306652 - AluSx SINE Alu -1 311 1 1208 236 122 33 chr13 91566517 91566708 -10306461 - MLT1D LTR MaLR -245 260 3 513 268 150 75 chr13 91567562 91567761 -10305408 + L2 LINE L2 2695 2878 -435 2371 86 0 9 chr13 91567761 91568076 -10305093 - AluSx SINE Alu 0 312 1 513 268 150 75 chr13 91568076 91568436 -10304733 + L2 LINE L2 2878 3313 0 287 293 0 0 chr13 91569303 91569378 -10303791 - MIR SINE MIR -72 190 116 21 36 0 0 chr13 91570264 91570292 -10302877 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr13 91571830 91571861 -10301308 + (TG)n Simple_repeat Simple_repeat 2 32 0 3647 151 40 10 chr13 91575050 91575724 -10297445 - Tigger3(Golem) DNA MER2_type -1 3028 2335 34 0 0 0 chr13 91576086 91576120 -10297049 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr13 91576206 91576241 -10296928 + AT_rich Low_complexity Low_complexity 1 35 0 717 239 0 0 chr13 91578011 91578191 -10294978 + (TG)n Simple_repeat Simple_repeat 1 180 0 621 261 0 0 chr13 91578219 91578399 -10294770 + (TG)n Simple_repeat Simple_repeat 1 180 0 257 237 0 13 chr13 91578420 91578496 -10294673 + (TG)n Simple_repeat Simple_repeat 2 76 0 842 255 150 45 chr13 91578732 91579151 -10294018 + MLT1C LTR MaLR 5 467 0 1412 199 15 92 chr13 91579467 91579860 -10293309 - MLT1A1 LTR MaLR -2 363 1 22887 189 23 31 chr13 91579924 91582486 -10290683 + L1PA10 LINE L1 10 2592 -3869 1797 145 0 36 chr13 91582486 91582790 -10290379 + AluSq SINE Alu 3 295 -18 22887 189 23 31 chr13 91582790 91585956 -10287213 + L1PA10 LINE L1 2592 5683 -778 5302 111 4 7 chr13 91586140 91586915 -10286254 + L1PA10 LINE L1 5710 6482 -1 28 71 0 0 chr13 91586987 91587043 -10286126 + AT_rich Low_complexity Low_complexity 1 56 0 433 309 82 21 chr13 91587299 91587542 -10285627 + L1ME1 LINE L1 5904 6161 -5 273 276 90 32 chr13 91588477 91588633 -10284536 - LTR16C LTR ERVL -40 451 287 267 292 73 10 chr13 91589637 91589733 -10283436 + MIR SINE MIR 106 207 -55 228 330 9 0 chr13 91590169 91590281 -10282888 + (TA)n Simple_repeat Simple_repeat 2 114 0 22 0 0 0 chr13 91590608 91590630 -10282539 + AT_rich Low_complexity Low_complexity 1 22 0 201 192 58 0 chr13 91591033 91591085 -10282084 + (AATTG)n Simple_repeat Simple_repeat 4 58 0 1234 37 0 19 chr13 91591553 91591714 -10281455 + L1PA4 LINE L1 5995 6152 -3 21 36 0 0 chr13 91592138 91592166 -10281003 + AT_rich Low_complexity Low_complexity 1 28 0 192 40 0 0 chr13 91592915 91592940 -10280229 + (CA)n Simple_repeat Simple_repeat 2 26 0 621 317 23 30 chr13 91593248 91593510 -10279659 - MLT1H LTR MaLR -230 319 60 2784 7 0 0 chr13 91594145 91594453 -10278716 - AluYa5 SINE Alu -3 308 1 30 59 0 0 chr13 91594525 91594576 -10278593 + AT_rich Low_complexity Low_complexity 1 51 0 4504 154 6 51 chr13 91594739 91595966 -10277203 + L1PB4 LINE L1 4970 6156 0 5076 131 37 1 chr13 91596850 91597667 -10275502 - L1PA15 LINE L1 0 6165 5320 253 337 0 0 chr13 91598008 91598097 -10275072 - MIR SINE MIR -109 153 65 480 35 0 0 chr13 91598201 91598259 -10274910 + (CA)n Simple_repeat Simple_repeat 2 59 0 25 31 0 0 chr13 91598530 91598562 -10274607 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr13 91598702 91598730 -10274439 + AT_rich Low_complexity Low_complexity 1 28 0 2259 96 0 0 chr13 91599265 91599558 -10273611 - AluSx SINE Alu -19 293 1 614 49 12 0 chr13 91599585 91599667 -10273502 + (TA)n Simple_repeat Simple_repeat 1 83 0 1221 187 12 16 chr13 91599668 91600157 -10273012 - L1MC2 LINE L1 -24 6320 5702 942 194 15 48 chr13 91602367 91602573 -10270596 - MER20 DNA MER1_type -19 200 2 21 36 0 0 chr13 91603496 91603524 -10269645 + AT_rich Low_complexity Low_complexity 1 28 0 291 54 0 0 chr13 91604407 91604444 -10268725 + (TG)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr13 91604953 91604973 -10268196 + (A)n Simple_repeat Simple_repeat 1 20 0 315 0 0 0 chr13 91604973 91605008 -10268161 + (TA)n Simple_repeat Simple_repeat 1 35 0 377 121 0 15 chr13 91605366 91605432 -10267737 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 31 44 0 0 chr13 91606462 91606507 -10266662 + AT_rich Low_complexity Low_complexity 1 45 0 337 196 68 6 chr13 91606560 91606723 -10266446 + (TA)n Simple_repeat Simple_repeat 1 173 0 321 348 68 17 chr13 91606993 91607229 -10265940 - MIR SINE MIR 0 262 15 2032 117 13 10 chr13 91607397 91607706 -10265463 + AluSx SINE Alu 1 310 -2 646 60 20 10 chr13 91607709 91607809 -10265360 + (GAAA)n Simple_repeat Simple_repeat 2 102 0 384 22 0 0 chr13 91607818 91607863 -10265306 + (TA)n Simple_repeat Simple_repeat 2 46 0 309 289 10 0 chr13 91608128 91608225 -10264944 + (TA)n Simple_repeat Simple_repeat 1 98 0 6845 66 4 4 chr13 91608279 91609988 -10263181 + L1PA7 LINE L1 4441 6152 -2 23 0 0 0 chr13 91610163 91610186 -10262983 + AT_rich Low_complexity Low_complexity 1 23 0 209 349 42 37 chr13 91610589 91610778 -10262391 - L2 LINE L2 -1286 2028 1839 1199 228 15 89 chr13 91612986 91613380 -10259789 - MLT1A1 LTR MaLR 0 365 1 327 321 228 26 chr13 91613380 91613648 -10259521 - LTR33A LTR ERVL -127 396 75 830 131 0 0 chr13 91613817 91613947 -10259222 - L1MD1 LINE L1 0 6242 6113 260 299 65 28 chr13 91614295 91614402 -10258767 + L2 LINE L2 3195 3305 -8 330 399 20 20 chr13 91615771 91615969 -10257200 + MIR3 SINE MIR 11 208 0 25 0 0 0 chr13 91616776 91616801 -10256368 + AT_rich Low_complexity Low_complexity 1 25 0 561 341 85 19 chr13 91617167 91617484 -10255685 - MER110 LTR ERV1 0 491 154 229 143 0 24 chr13 91617587 91617629 -10255540 - MER110A LTR ERV1 -333 135 95 1695 134 34 28 chr13 91617746 91618067 -10255102 - L1MA8 LINE L1 -4 6287 5965 28 79 0 0 chr13 91618686 91618749 -10254420 + AT_rich Low_complexity Low_complexity 1 63 0 32 57 0 0 chr13 91619202 91619255 -10253914 + AT_rich Low_complexity Low_complexity 1 53 0 1821 228 167 22 chr13 91619342 91619997 -10253172 + MER52A LTR ERV1 11 170 -466 206 132 57 19 chr13 91620295 91620348 -10252821 + (CATTA)n Simple_repeat Simple_repeat 4 58 0 2551 189 31 0 chr13 91621160 91621641 -10251528 + L1MA9 LINE L1 5586 6081 -231 605 182 0 0 chr13 91621644 91621754 -10251415 + L1MA9 LINE L1 6181 6290 -22 184 216 0 27 chr13 91621927 91622001 -10251168 + CT-rich Low_complexity Low_complexity 3 74 0 2997 215 15 3 chr13 91622608 91623218 -10249951 + L1M3f LINE L1 1 617 -4711 1702 160 136 22 chr13 91623218 91623587 -10249582 + MSTA LTR MaLR 1 411 -17 366 141 31 0 chr13 91623564 91623628 -10249541 + MADE1 DNA Mariner 15 80 0 * 384 273 11 0 chr13 91623660 91623748 -10249421 + L1M3f LINE L1 613 701 -4627 700 167 0 0 chr13 91623749 91623881 -10249288 + L1M3f LINE L1 735 866 -4462 2501 233 79 25 chr13 91623892 91624489 -10248680 + L1M3f LINE L1 1002 1565 -4763 576 42 0 0 chr13 91624489 91624560 -10248609 + (TA)n Simple_repeat Simple_repeat 2 72 0 2501 233 79 25 chr13 91624560 91624715 -10248454 + L1M3f LINE L1 1565 1710 -4618 357 24 0 0 chr13 91624715 91624757 -10248412 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2501 233 79 25 chr13 91624757 91624841 -10248328 + L1M3f LINE L1 1710 1884 -4444 1116 139 58 0 chr13 91624846 91625054 -10248115 + L1MA2 LINE L1 5979 6198 -106 494 254 22 111 chr13 91625089 91625377 -10247792 - MIR SINE MIR -1 261 1 244 191 0 0 chr13 91625413 91625460 -10247709 - MLT1D LTR MaLR -10 495 449 * 370 196 8 113 chr13 91625459 91625592 -10247577 - MLT1D LTR MaLR -378 127 9 298 347 30 30 chr13 91626852 91627114 -10246055 + L2 LINE L2 2368 2629 -685 200 225 50 75 chr13 91628738 91628818 -10244351 + MIR3 SINE MIR 90 167 -41 2276 102 0 0 chr13 91629371 91629678 -10243491 + AluSx SINE Alu 1 307 0 280 200 0 106 chr13 91629761 91629846 -10243323 + MER103 DNA DNA 2 77 -89 8150 37 1 1 chr13 91631062 91632113 -10241056 - L1P LINE L1 -3594 2552 1502 576 140 0 11 chr13 91632389 91632482 -10240687 - L1PA10 LINE L1 -11 6157 6066 1649 60 0 0 chr13 91632482 91632700 -10240469 - L1PA8A LINE L1 -109 6022 5805 2483 88 22 0 chr13 91633137 91633502 -10239667 - Tigger1 DNA MER2_type -435 1983 1611 590 116 11 0 chr13 91633612 91633707 -10239462 - Charlie3 DNA MER1_type -2614 96 1 21 57 0 0 chr13 91634030 91634065 -10239104 + AT_rich Low_complexity Low_complexity 1 35 0 3793 187 40 29 chr13 91635249 91636146 -10237023 + L1MC3 LINE L1 6685 7591 -194 2046 98 49 3 chr13 91636146 91636431 -10236738 + AluSg SINE Alu 1 298 -12 956 80 109 0 chr13 91636806 91636943 -10236226 - THE1B LTR MaLR -212 152 1 1860 149 0 13 chr13 91637092 91637394 -10235775 - AluSx SINE Alu -14 298 1 219 205 0 0 chr13 91637415 91637454 -10235715 - L2 LINE L2 -17 3255 3217 366 331 133 11 chr13 91637960 91638141 -10235028 + MIR SINE MIR 60 262 0 878 333 43 48 chr13 91638279 91638721 -10234448 + L2 LINE L2 2825 3264 -8 1985 159 0 3 chr13 91638793 91639094 -10234075 - AluJb SINE Alu -12 300 1 202 171 102 87 chr13 91639806 91639875 -10233294 - MIR SINE MIR -39 169 103 377 348 80 0 chr13 91640521 91640659 -10232510 + L2 LINE L2 3123 3271 -1 469 235 28 16 chr13 91640996 91641253 -10231916 + GA-rich Low_complexity Low_complexity 1 260 0 21 71 0 0 chr13 91641971 91642013 -10231156 + AT_rich Low_complexity Low_complexity 1 42 0 792 308 83 40 chr13 91642752 91643321 -10229848 - MLT1E LTR MaLR 0 593 1 1874 162 7 7 chr13 91643321 91643623 -10229546 + AluSq SINE Alu 1 302 -11 777 107 38 0 chr13 91643773 91643904 -10229265 + L1PA13 LINE L1 6023 6158 -5 234 246 118 45 chr13 91644012 91644122 -10229047 - L2 LINE L2 -4 3268 3151 22 0 0 0 chr13 91644305 91644327 -10228842 + AT_rich Low_complexity Low_complexity 1 22 0 251 203 14 0 chr13 91645601 91645670 -10227499 + GA-rich Low_complexity Low_complexity 3 72 0 193 342 53 8 chr13 91645987 91646073 -10227096 + MIR3 SINE MIR 68 167 -41 1909 229 33 4 chr13 91646073 91646523 -10226646 + MLT1C LTR MaLR 1 463 -4 193 342 53 8 chr13 91646523 91646566 -10226603 + MIR3 SINE MIR 167 207 -1 1865 137 13 46 chr13 91647511 91647572 -10225597 + MER46B DNA MER2_type 1 62 -2669 2435 35 0 0 chr13 91647572 91647878 -10225291 + AluY SINE Alu 1 306 0 1865 137 13 46 chr13 91647878 91648188 -10224981 + MER46B DNA MER2_type 62 236 0 2085 176 56 12 chr13 91650776 91651186 -10221983 + MSTA LTR MaLR 1 428 0 7872 193 26 34 chr13 91651186 91652846 -10220323 + MSTA-int LTR MaLR 1 1647 -4 1865 204 56 17 chr13 91652856 91653268 -10219901 + MSTA LTR MaLR 1 428 0 883 142 0 40 chr13 91653413 91653561 -10219608 + FLAM_C SINE Alu 1 142 -1 23 0 0 0 chr13 91653599 91653622 -10219547 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 91653818 91653851 -10219318 + AT_rich Low_complexity Low_complexity 1 33 0 192 40 0 0 chr13 91654028 91654053 -10219116 + (T)n Simple_repeat Simple_repeat 1 25 0 480 319 73 11 chr13 91655298 91655488 -10217681 - L2 LINE L2 -2 3311 3099 2166 132 3 0 chr13 91655488 91655791 -10217378 + AluSx SINE Alu 1 304 -8 480 319 73 11 chr13 91655791 91655860 -10217309 - L2 LINE L2 -214 3099 3036 487 301 77 0 chr13 91655902 91656085 -10217084 - L2 LINE L2 -807 2507 2311 877 270 95 23 chr13 91656603 91657036 -10216133 - LTR16B LTR ERVL 0 464 1 21 0 0 0 chr13 91657279 91657300 -10215869 + AT_rich Low_complexity Low_complexity 1 21 0 601 268 114 26 chr13 91657375 91657603 -10215566 - MIR SINE MIR 0 262 15 303 319 133 0 chr13 91658951 91659064 -10214105 + L2 LINE L2 3186 3313 0 2545 48 0 0 chr13 91659130 91659424 -10213745 + AluY SINE Alu 1 294 -17 1972 122 4 7 chr13 91659619 91659939 -10213230 - AluSx SINE Alu 0 326 8 798 169 28 6 chr13 91660019 91660196 -10212973 - L1PA13 LINE L1 -298 5865 5685 7174 172 20 9 chr13 91660587 91662762 -10210407 - L1PA13 LINE L1 -9 6154 3957 303 49 0 0 chr13 91663008 91663049 -10210120 + (TC)n Simple_repeat Simple_repeat 2 42 0 417 261 23 96 chr13 91663245 91663473 -10209696 - MIR SINE MIR -43 219 19 215 299 156 0 chr13 91663493 91663570 -10209599 + L2 LINE L2 3179 3267 -5 27 29 0 0 chr13 91663631 91663665 -10209504 + AT_rich Low_complexity Low_complexity 1 34 0 2177 181 30 34 chr13 91663887 91664394 -10208775 - L1MA9 LINE L1 0 6312 5808 3289 193 47 3 chr13 91664405 91665165 -10208004 - L1MA9 LINE L1 -1031 5115 4322 1882 153 3 3 chr13 91665550 91665844 -10207325 + AluSx SINE Alu 1 294 -18 321 271 10 10 chr13 91668009 91668105 -10205064 - LTR16C LTR ERVL -4 487 392 6561 84 19 9 chr13 91669481 91671028 -10202141 - L1PA8 LINE L1 -9 6163 4610 225 0 0 0 chr13 91671030 91671056 -10202113 + L1P3 LINE L1 954 979 -5482 444 331 18 6 chr13 91671941 91672110 -10201059 - MIR SINE MIR -17 245 75 926 159 105 4 chr13 91672195 91672520 -10200649 + MSTA LTR MaLR 1 391 -35 232 257 69 42 chr13 91673265 91673409 -10199760 - L1ME LINE L1 -297 5824 5677 1284 195 109 0 chr13 91673625 91673927 -10199242 - MER44D DNA MER2_type -2 607 3 306 260 22 28 chr13 91674023 91674204 -10198965 + (TA)n Simple_repeat Simple_repeat 1 180 0 1190 40 51 29 chr13 91676213 91676388 -10196781 - L1PA4 LINE L1 0 6155 5977 271 304 72 14 chr13 91677306 91677444 -10195725 + MIR SINE MIR 20 165 -97 212 308 0 0 chr13 91677523 91677588 -10195581 + (CAT)n Simple_repeat Simple_repeat 2 66 0 206 363 56 25 chr13 91678082 91678225 -10194944 + MIR3 SINE MIR 10 152 -78 23 0 0 0 chr13 91679734 91679757 -10193412 + AT_rich Low_complexity Low_complexity 1 23 0 304 164 0 0 chr13 91679912 91679967 -10193202 + MADE1 DNA Mariner 25 79 -1 269 270 16 0 chr13 91679980 91680043 -10193126 - MIR3 SINE MIR -37 171 108 1777 117 4 0 chr13 91680578 91680846 -10192323 - AluSp SINE Alu 0 303 35 22 0 0 0 chr13 91682241 91682263 -10190906 + AT_rich Low_complexity Low_complexity 1 22 0 222 204 0 0 chr13 91682473 91682522 -10190647 + (CA)n Simple_repeat Simple_repeat 2 50 0 333 272 56 32 chr13 91682529 91682654 -10190515 + L2 LINE L2 3182 3309 -4 738 191 15 0 chr13 91683044 91683175 -10189994 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr13 91683212 91683234 -10189935 + AT_rich Low_complexity Low_complexity 1 22 0 523 310 125 21 chr13 91683556 91683979 -10189190 + L1ME3 LINE L1 5385 5851 -311 2358 61 0 7 chr13 91684235 91684532 -10188637 - AluY SINE Alu -16 295 1 243 152 0 0 chr13 91684780 91684826 -10188343 + CT-rich Low_complexity Low_complexity 2 47 0 1063 194 38 105 chr13 91685609 91686000 -10187169 + MLT1A1 LTR MaLR 1 365 0 2776 239 51 31 chr13 91686001 91686608 -10186561 + MLT1A1-int LTR MaLR 2 595 -1140 1783 128 0 4 chr13 91686608 91686858 -10186311 + AluSq SINE Alu 23 271 -42 2776 239 51 31 chr13 91686858 91687167 -10186002 + MLT1A1-int LTR MaLR 595 1277 -458 756 247 78 46 chr13 91687410 91687847 -10185322 - L1MC5 LINE L1 -444 7517 7067 2601 193 88 23 chr13 91687940 91688171 -10184998 + L1MB7 LINE L1 5333 5547 -637 2096 93 0 55 chr13 91688171 91688483 -10184686 + AluSg SINE Alu 3 297 -13 2601 193 88 23 chr13 91688483 91688862 -10184307 + L1MB7 LINE L1 5547 5983 -201 596 231 8 0 chr13 91688897 91689027 -10184142 + L1MB7 LINE L1 6039 6169 -15 1735 182 14 0 chr13 91689372 91689668 -10183501 - AluJo SINE Alu -7 305 6 2276 61 3 3 chr13 91690200 91690497 -10182672 - AluY SINE Alu -14 297 1 22 0 0 0 chr13 91690987 91691009 -10182160 + AT_rich Low_complexity Low_complexity 1 22 0 1738 266 90 5 chr13 91691010 91691619 -10181550 + HsTC2 DNA Tc2 1 661 -1237 774 209 68 34 chr13 91691620 91691825 -10181344 + HsTC2 DNA Tc2 1528 1743 -155 2154 107 3 10 chr13 91691825 91692133 -10181036 - AluSp SINE Alu -7 306 1 774 209 68 34 chr13 91692133 91692162 -10181007 + HsTC2 DNA Tc2 1743 1770 -128 490 213 13 0 chr13 91692178 91692333 -10180836 + (TA)n Simple_repeat Simple_repeat 2 158 0 207 358 178 12 chr13 91692474 91692795 -10180374 - L2 LINE L2 -697 2617 2244 411 316 139 14 chr13 91692823 91693038 -10180131 + L1ME3A LINE L1 5594 5835 -335 1761 150 147 24 chr13 91693073 91693454 -10179715 - MSTA LTR MaLR 0 428 1 301 237 21 10 chr13 91693550 91693647 -10179522 + (TA)n Simple_repeat Simple_repeat 1 98 0 443 302 66 75 chr13 91693726 91694272 -10178897 + L1MC/D LINE L1 4494 5034 -1112 346 287 186 17 chr13 91694496 91694733 -10178436 + L1MC/D LINE L1 5369 5645 -2163 746 206 32 7 chr13 91695068 91695223 -10177946 + MLT1A2 LTR MaLR 216 374 0 807 121 20 0 chr13 91699399 91699548 -10173621 + (TCTA)n Simple_repeat Simple_repeat 2 153 0 21 36 0 0 chr13 91699652 91699680 -10173489 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 91700167 91700192 -10172977 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 91701885 91701914 -10171255 + AT_rich Low_complexity Low_complexity 1 29 0 290 143 16 0 chr13 91702443 91702506 -10170663 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 378 250 194 8 chr13 91702715 91702839 -10170330 - MIR SINE MIR -37 225 79 515 286 103 75 chr13 91703815 91704414 -10168755 - L1MC4a LINE L1 -1878 5930 5315 260 264 47 38 chr13 91704563 91704669 -10168500 + MLT1H LTR MaLR 71 177 -372 306 67 0 0 chr13 91705401 91705446 -10167723 + (CA)n Simple_repeat Simple_repeat 1 45 0 306 296 46 0 chr13 91705571 91705679 -10167490 - L1MC4a LINE L1 -1536 4610 4498 4034 206 102 12 chr13 91705927 91707360 -10165809 - L1MD1 LINE L1 -18 6618 5030 2171 221 49 53 chr13 91707365 91707643 -10165526 - L1MD1 LINE L1 -4569 1971 1693 2271 108 0 6 chr13 91707643 91707957 -10165212 + AluSx SINE Alu 1 312 0 2171 221 49 53 chr13 91707957 91708437 -10164732 - L1MD1 LINE L1 -4847 1693 1216 235 280 104 50 chr13 91708767 91708949 -10164220 - L1MC4a LINE L1 -2316 3830 3639 243 241 0 0 chr13 91710676 91710734 -10162435 + L2 LINE L2 3209 3266 -6 355 314 52 23 chr13 91710829 91711001 -10162168 - MIR SINE MIR -50 212 36 186 282 233 10 chr13 91711128 91711231 -10161938 + L2 LINE L2 3145 3270 -2 726 134 0 60 chr13 91711468 91711602 -10161567 + FLAM_C SINE Alu 1 126 -7 2669 161 48 18 chr13 91712721 91713279 -10159890 - L1MA8 LINE L1 -3 6288 5714 2393 107 34 11 chr13 91714014 91714370 -10158799 - THE1B LTR MaLR 0 364 1 2259 174 52 7 chr13 91714386 91714846 -10158323 - MER31A LTR ERV1 -4 481 1 2256 105 0 0 chr13 91714919 91715213 -10157956 + AluSx SINE Alu 2 295 -17 21 0 0 0 chr13 91716399 91716420 -10156749 + AT_rich Low_complexity Low_complexity 1 21 0 6275 113 33 12 chr13 91716483 91716580 -10156589 + L1MA2 LINE L1 5233 5327 -977 2129 92 7 3 chr13 91716580 91716875 -10156294 + AluY SINE Alu 1 296 -15 6275 113 33 12 chr13 91716875 91717827 -10155342 + L1MA2 LINE L1 5327 6304 0 530 206 9 0 chr13 91718034 91718141 -10155028 - FLAM_C SINE Alu -32 111 4 22 70 0 0 chr13 91718145 91718188 -10154981 + AT_rich Low_complexity Low_complexity 1 43 0 305 308 107 12 chr13 91718428 91718597 -10154572 + MER88 LTR ERVL 82 266 -198 * 1057 259 85 39 chr13 91718456 91718655 -10154514 - MER74B LTR ERVL -93 529 341 1209 133 95 0 chr13 91718655 91718865 -10154304 - MER30 DNA MER1_type 0 230 1 1057 259 85 39 chr13 91718865 91719102 -10154067 - MER74B LTR ERVL -281 341 73 383 272 41 31 chr13 91719995 91720190 -10152979 - LTR16C LTR ERVL -7 484 288 25 31 0 0 chr13 91720680 91720712 -10152457 + AT_rich Low_complexity Low_complexity 1 32 0 615 301 139 26 chr13 91720779 91721225 -10151944 - L2 LINE L2 -91 3222 2742 219 88 0 0 chr13 91721236 91721270 -10151899 + (CA)n Simple_repeat Simple_repeat 2 35 0 693 183 35 0 chr13 91721274 91721416 -10151753 + L1MA10 LINE L1 6177 6323 -11 498 340 206 2 chr13 91721467 91721627 -10151542 - L2 LINE L2 -884 2430 2304 540 0 0 0 chr13 91721627 91721687 -10151482 + (TA)n Simple_repeat Simple_repeat 2 61 0 498 340 206 2 chr13 91721687 91721949 -10151220 - L2 LINE L2 -1010 2304 1922 24 67 0 0 chr13 91721989 91722034 -10151135 + AT_rich Low_complexity Low_complexity 1 45 0 301 366 54 10 chr13 91722034 91722239 -10150930 + L1M4 LINE L1 3706 3919 -2227 262 254 52 52 chr13 91722366 91722539 -10150630 + L1M4 LINE L1 4075 4247 -1899 1930 111 0 7 chr13 91722574 91722845 -10150324 + AluSq SINE Alu 45 313 0 4055 72 28 0 chr13 91723107 91723646 -10149523 + MER41A LTR ERV1 1 554 0 207 194 0 0 chr13 91723732 91723768 -10149401 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr13 91724676 91724704 -10148465 + AT_rich Low_complexity Low_complexity 1 28 0 2147 101 9 35 chr13 91724991 91725307 -10147862 + AluSg SINE Alu 1 308 -2 21 71 0 0 chr13 91725330 91725372 -10147797 + AT_rich Low_complexity Low_complexity 1 42 0 921 241 90 83 chr13 91725538 91725995 -10147174 + LTR40a LTR ERVL 1 460 -2 1955 109 18 7 chr13 91726024 91726298 -10146871 + AluSx SINE Alu 20 296 -16 1802 115 79 12 chr13 91726847 91727232 -10145937 - MER9 LTR ERVK 0 511 34 305 274 243 50 chr13 91727269 91727586 -10145583 - L2 LINE L2 -1017 2297 1920 304 340 62 42 chr13 91727587 91727846 -10145323 + L1M4 LINE L1 3638 3901 -2245 2142 66 0 0 chr13 91728048 91728306 -10144863 - AluY SINE Alu 0 311 54 22 0 0 0 chr13 91728308 91728330 -10144839 + AT_rich Low_complexity Low_complexity 1 22 0 1202 156 9 14 chr13 91729084 91729295 -10143874 + MER2 DNA MER2_type 1 210 -135 237 292 15 0 chr13 91729335 91729400 -10143769 + MER2 DNA MER2_type 280 345 0 1523 180 28 3 chr13 91729629 91729918 -10143251 + AluJo SINE Alu 1 296 -16 888 246 24 14 chr13 91730653 91730864 -10142305 + MER58A DNA MER1_type 12 224 0 323 271 90 30 chr13 91731921 91732054 -10141115 - MIR3 SINE MIR -5 203 63 451 0 0 0 chr13 91733525 91733574 -10139595 - pTR5 LTR ERV1 0 2438 2390 318 304 30 22 chr13 91734992 91735127 -10138042 + L1MEc LINE L1 40 175 -6221 261 297 186 14 chr13 91735128 91735273 -10137896 + MLT1E3 LTR MaLR 1 170 -454 911 264 20 28 chr13 91735460 91735714 -10137455 + MLT1E2 LTR MaLR 375 626 0 2005 288 37 4 chr13 91735715 91736410 -10136759 + L1MEc LINE L1 173 890 -5506 * 5044 167 35 23 chr13 91736404 91736921 -10136248 + L1MA7 LINE L1 5208 5717 -574 2092 138 24 12 chr13 91736921 91737254 -10135915 - MER1B DNA MER1_type 0 337 1 5044 167 35 23 chr13 91737254 91737784 -10135385 + L1MA7 LINE L1 5717 6291 0 1787 249 92 80 chr13 91737780 91739297 -10133872 + L1MEc LINE L1 863 2398 -3998 * 1987 158 3 6 chr13 91740490 91740852 -10132317 + MER46B DNA MER2_type 1 236 0 201 328 0 0 chr13 91740865 91740929 -10132240 - MIR SINE MIR 0 262 199 238 320 136 0 chr13 91740930 91741033 -10132136 - LTR16A1 LTR ERVL 0 457 341 465 115 26 0 chr13 91741036 91741114 -10132055 - AluS SINE Alu -233 80 1 360 278 95 0 chr13 91741425 91741551 -10131618 - MIR SINE MIR -62 200 63 182 241 93 0 chr13 91742026 91742080 -10131089 + MIR SINE MIR 94 152 -110 2161 193 63 20 chr13 91745433 91745926 -10127243 - MER67D LTR ERV1 0 514 1 21 82 0 0 chr13 91746077 91746126 -10127043 + AT_rich Low_complexity Low_complexity 1 49 0 229 350 11 43 chr13 91746470 91746656 -10126513 + L2 LINE L2 2578 2757 -557 2352 173 7 31 chr13 91746971 91747427 -10125742 - MER65A LTR ERV1 0 445 1 206 341 82 35 chr13 91747698 91747783 -10125386 + L2 LINE L2 3146 3234 -38 470 195 9 53 chr13 91747911 91748024 -10125145 + L2 LINE L2 3206 3313 0 301 312 196 20 chr13 91750150 91750349 -10122820 - MLT1I LTR MaLR -117 292 59 183 336 37 19 chr13 91750670 91750777 -10122392 - MIR3 SINE MIR -18 190 82 19090 184 30 14 chr13 91751391 91756730 -10116439 + L1M1 LINE L1 12 5440 -2125 471 108 0 0 chr13 91756733 91756807 -10116362 + L1MA3 LINE L1 6232 6305 0 261 0 0 0 chr13 91756813 91756842 -10116327 + (TG)n Simple_repeat Simple_repeat 2 30 0 264 59 0 0 chr13 91756856 91756890 -10116279 + (GA)n Simple_repeat Simple_repeat 2 35 0 26 30 0 0 chr13 91758780 91758813 -10114356 + AT_rich Low_complexity Low_complexity 1 33 0 2592 55 0 0 chr13 91758939 91759249 -10113920 - AluY SINE Alu 0 311 2 331 285 88 22 chr13 91759950 91760087 -10113082 + MIR SINE MIR 23 168 -94 351 127 0 0 chr13 91760471 91760534 -10112635 + (TC)n Simple_repeat Simple_repeat 2 64 0 1680 196 85 23 chr13 91760652 91761166 -10112003 + MLT2A2 LTR ERVL 1 554 0 600 279 32 48 chr13 91761360 91761611 -10111558 - L1MCb LINE L1 -5485 560 314 611 211 12 4 chr13 91762704 91762955 -10110214 + (GGATG)n Simple_repeat Simple_repeat 1 252 0 840 154 4 19 chr13 91762997 91763265 -10109904 + (GGATG)n Simple_repeat Simple_repeat 1 264 0 306 364 107 0 chr13 91764071 91764211 -10108958 - L2 LINE L2 -1 3271 3117 1648 203 69 14 chr13 91764694 91765058 -10108111 + MLT1B LTR MaLR 7 390 0 2473 113 8 3 chr13 91765080 91765442 -10107727 + THE1B LTR MaLR 1 364 0 44002 40 1 2 chr13 91769043 91775202 -10097967 + L1PA3 LINE L1 2 6155 0 282 203 0 89 chr13 91775266 91775345 -10097824 - L2 LINE L2 0 3272 3201 204 277 46 0 chr13 91776480 91776545 -10096624 - MIR SINE MIR 0 262 195 254 288 14 13 chr13 91776671 91776897 -10096272 + (TG)n Simple_repeat Simple_repeat 1 226 0 570 230 88 40 chr13 91777085 91777311 -10095858 + LTR16A1 LTR ERVL 219 455 -2 3077 111 112 56 chr13 91777385 91777937 -10095232 - LTR12 LTR ERV1 -131 583 1 974 78 0 0 chr13 91778641 91778769 -10094400 - L1PA14 LINE L1 -4 6157 6030 1744 156 15 0 chr13 91780232 91780501 -10092668 + AluSx SINE Alu 1 273 -39 299 227 10 0 chr13 91780503 91780600 -10092569 + GA-rich Low_complexity Low_complexity 3 100 0 29 78 0 0 chr13 91781205 91781269 -10091900 + AT_rich Low_complexity Low_complexity 1 64 0 1772 154 52 28 chr13 91781310 91781673 -10091496 - THE1C LTR MaLR -3 372 1 699 275 105 26 chr13 91782119 91782424 -10090745 + L2 LINE L2 1403 1731 -1583 16874 97 3 0 chr13 91782426 91785661 -10087508 + L1PA7 LINE L1 2902 6153 -1 2347 162 24 30 chr13 91785800 91786600 -10086569 + L1MA9 LINE L1 5452 6311 -1 768 326 79 9 chr13 91786647 91787067 -10086102 + L2 LINE L2 1865 2313 -1001 310 213 73 104 chr13 91787114 91787278 -10085891 + L1ME LINE L1 5355 5513 -651 21 82 0 0 chr13 91787799 91787848 -10085321 + AT_rich Low_complexity Low_complexity 1 49 0 710 329 25 8 chr13 91787919 91788162 -10085007 + MIR SINE MIR 16 262 0 1153 314 155 50 chr13 91790203 91791794 -10081375 - L2 LINE L2 -3 3310 1545 210 71 0 0 chr13 91792100 91792128 -10081041 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 275 343 131 7 chr13 91792330 91792467 -10080702 + L2 LINE L2 3160 3313 0 30 0 0 0 chr13 91792772 91792802 -10080367 + AT_rich Low_complexity Low_complexity 1 30 0 186 308 137 43 chr13 91794475 91794592 -10078577 - MIR SINE MIR -132 130 3 462 291 119 61 chr13 91794792 91795187 -10077982 + MLT1J2 LTR MaLR 29 446 -4 1791 200 23 28 chr13 91795291 91795557 -10077612 + MLT1B LTR MaLR 3 268 -122 2498 40 3 0 chr13 91795557 91795840 -10077329 + AluY SINE Alu 1 287 -24 207 0 0 0 chr13 91795840 91795863 -10077306 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2498 40 3 0 chr13 91795863 91795875 -10077294 + AluY SINE Alu 287 297 -14 1791 200 23 28 chr13 91795875 91795998 -10077171 + MLT1B LTR MaLR 268 390 0 227 336 56 16 chr13 91798994 91799119 -10074050 + MIR3 SINE MIR 74 203 -5 357 333 13 19 chr13 91799686 91799842 -10073327 - MIR SINE MIR -105 157 3 192 182 0 0 chr13 91799955 91799999 -10073170 + (CA)n Simple_repeat Simple_repeat 1 44 0 2784 90 0 11 chr13 91800109 91800488 -10072681 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr13 91800812 91800842 -10072327 + AT_rich Low_complexity Low_complexity 1 30 0 225 85 34 34 chr13 91800990 91801049 -10072120 + A-rich Low_complexity Low_complexity 5 63 0 2768 118 3 3 chr13 91801211 91801602 -10071567 + MER1A DNA MER1_type 139 529 0 194 219 49 0 chr13 91801682 91801723 -10071446 - L2 LINE L2 -10 3303 3261 595 301 99 6 chr13 91801737 91802079 -10071090 - L1MCc LINE L1 -4906 1517 1144 348 355 5 26 chr13 91802347 91802536 -10070633 - L1MCc LINE L1 -5985 438 254 418 307 58 34 chr13 91803074 91803279 -10069890 + MIR SINE MIR 53 262 0 180 0 0 0 chr13 91804918 91804938 -10068231 + (A)n Simple_repeat Simple_repeat 1 20 0 390 310 7 28 chr13 91804938 91805083 -10068086 + MLT1J2 LTR MaLR 273 414 -36 854 246 30 30 chr13 91805172 91805375 -10067794 - MER20 DNA MER1_type -15 204 2 216 290 0 9 chr13 91806571 91806678 -10066491 + (TA)n Simple_repeat Simple_repeat 1 106 0 230 73 24 0 chr13 91806855 91806896 -10066273 + (TG)n Simple_repeat Simple_repeat 2 43 0 1187 317 55 7 chr13 91807492 91807946 -10065223 + LTR16C LTR ERVL 16 491 0 485 338 17 21 chr13 91808286 91808523 -10064646 + HERV16 LTR ERVL 403 638 -4358 1108 171 154 26 chr13 91808848 91809122 -10064047 - MLT1A1 LTR MaLR -47 318 6 2424 40 0 59 chr13 91809236 91809559 -10063610 - AluY SINE Alu -7 304 1 274 338 62 23 chr13 91809823 91810131 -10063038 + HERV16 LTR ERVL 1475 1794 -3860 827 313 59 70 chr13 91810241 91810937 -10062232 + HERV16 LTR ERVL 1935 2622 -2374 715 269 23 31 chr13 91811399 91811656 -10061513 + LTR16C LTR ERVL 237 491 0 1956 132 0 17 chr13 91812220 91812531 -10060638 + AluSx SINE Alu 1 306 0 183 42 0 0 chr13 91812583 91812607 -10060562 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 2023 119 0 4 chr13 91812608 91812885 -10060284 - AluSx SINE Alu -31 281 6 1264 182 4 40 chr13 91813211 91813464 -10059705 + AluJo SINE Alu 54 297 -15 318 383 0 7 chr13 91813964 91814105 -10059064 + L3b LINE CR1 1119 1258 -325 302 252 20 93 chr13 91814759 91814910 -10058259 + L1MC4 LINE L1 6564 6703 -1339 389 115 46 0 chr13 91814916 91815003 -10058166 + (TA)n Simple_repeat Simple_repeat 2 92 0 24 67 0 0 chr13 91815591 91815636 -10057533 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr13 91817377 91817406 -10055763 + AT_rich Low_complexity Low_complexity 1 29 0 208 246 33 0 chr13 91820459 91820520 -10052649 + CT-rich Low_complexity Low_complexity 2 64 0 266 281 0 0 chr13 91821513 91821577 -10051592 + (TG)n Simple_repeat Simple_repeat 1 64 0 316 318 45 56 chr13 91821598 91821777 -10051392 + L1MEd LINE L1 233 409 -5710 505 213 23 30 chr13 91822255 91822469 -10050700 + L1MC/D LINE L1 5295 5514 -652 930 218 102 3 chr13 91822902 91823327 -10049842 + MLT1D LTR MaLR 1 500 -5 634 203 7 28 chr13 91825193 91825336 -10047833 + FLAM_C SINE Alu 1 140 -3 936 160 16 147 chr13 91825504 91825810 -10047359 - L1MD3 LINE L1 0 7995 7730 27 0 0 0 chr13 91827287 91827314 -10045855 + AT_rich Low_complexity Low_complexity 1 27 0 565 209 104 0 chr13 91827323 91827438 -10045731 - FLAM_A SINE Alu -4 129 3 28 48 0 0 chr13 91827704 91827746 -10045423 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr13 91827894 91827918 -10045251 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 91828213 91828243 -10044926 + AT_rich Low_complexity Low_complexity 1 30 0 243 88 0 0 chr13 91828838 91828872 -10044297 + (A)n Simple_repeat Simple_repeat 1 34 0 291 28 0 0 chr13 91830371 91830407 -10042762 + (CA)n Simple_repeat Simple_repeat 2 37 0 462 325 30 15 chr13 91830891 91831088 -10042081 + MIR SINE MIR 3 202 -60 810 214 106 91 chr13 91831154 91831495 -10041674 - MLT1A2 LTR MaLR -22 352 7 1890 115 49 0 chr13 91832331 91832617 -10040552 - AluSx SINE Alu -12 300 1 23 0 0 0 chr13 91832994 91833017 -10040152 + AT_rich Low_complexity Low_complexity 1 23 0 1703 223 95 42 chr13 91833197 91833240 -10039929 - MLT2B3 LTR ERVL -1 553 514 513 44 0 0 chr13 91833240 91833308 -10039861 + (TG)n Simple_repeat Simple_repeat 2 69 0 1703 223 95 42 chr13 91833308 91833718 -10039451 - MLT2B3 LTR ERVL -40 514 76 444 157 0 0 chr13 91833839 91833909 -10039260 - MLT2B3 LTR ERVL -484 70 1 346 343 28 13 chr13 91833958 91834152 -10039017 - L1ME3A LINE L1 -276 5888 5725 367 250 114 68 chr13 91834921 91835245 -10037924 + L1M4 LINE L1 4030 4368 -1778 24 32 0 0 chr13 91835306 91835337 -10037832 + AT_rich Low_complexity Low_complexity 1 31 0 239 359 55 34 chr13 91836161 91836487 -10036682 + L1ME LINE L1 297 629 -5441 2428 159 88 79 chr13 91836714 91837034 -10036135 - L1MC2 LINE L1 -388 5956 5640 1778 138 54 43 chr13 91837034 91837403 -10035766 + THE1C LTR MaLR 1 373 -2 2428 159 88 79 chr13 91837403 91837841 -10035328 - L1MC2 LINE L1 -704 5640 5186 28 61 0 0 chr13 91838056 91838105 -10035064 + AT_rich Low_complexity Low_complexity 1 49 0 36 0 0 0 chr13 91838181 91838217 -10034952 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr13 91838674 91838698 -10034471 + AT_rich Low_complexity Low_complexity 1 24 0 326 225 56 0 chr13 91839091 91839162 -10034007 - MLT1J1 LTR MaLR -119 327 253 460 298 16 0 chr13 91839262 91839450 -10033719 + Charlie2a DNA MER1_type 1471 1661 -1201 2239 112 0 0 chr13 91840397 91840701 -10032468 + AluSq SINE Alu 1 304 -9 2089 113 0 0 chr13 91840857 91841175 -10031994 - AluSq SINE Alu 0 320 3 565 237 141 110 chr13 91841243 91841606 -10031563 - MLT1A2 LTR MaLR 0 374 1 510 320 101 32 chr13 91842226 91842664 -10030505 + L1MC/D LINE L1 5259 5726 -2082 202 189 0 0 chr13 91842929 91842966 -10030203 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr13 91844180 91844210 -10028959 + AT_rich Low_complexity Low_complexity 1 30 0 219 69 0 0 chr13 91844257 91844286 -10028883 + (TG)n Simple_repeat Simple_repeat 1 29 0 1353 170 67 0 chr13 91845218 91845297 -10027872 + AluJo SINE Alu 39 111 -201 234 0 0 0 chr13 91845297 91845323 -10027846 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1353 170 67 0 chr13 91845323 91845496 -10027673 + AluJo SINE Alu 111 308 -4 864 308 54 25 chr13 91845507 91845952 -10027217 - LTR40c LTR ERVL -6 459 2 2099 161 75 5 chr13 91846122 91846520 -10026649 - MSTB LTR MaLR 0 426 1 4938 200 70 55 chr13 91846573 91847082 -10026087 - Charlie1a DNA MER1_type -1318 1443 943 1595 186 7 10 chr13 91847082 91847378 -10025791 - AluJo SINE Alu -13 299 5 4938 200 70 55 chr13 91847378 91848284 -10024885 - Charlie1a DNA MER1_type -1818 943 7 204 227 0 0 chr13 91848389 91848433 -10024736 + CT-rich Low_complexity Low_complexity 2 45 0 942 293 107 33 chr13 91850055 91850605 -10022564 + MLT1G1 LTR MaLR 1 591 -4 330 171 29 0 chr13 91851284 91851354 -10021815 - L1MB2 LINE L1 -1 6170 6099 423 234 103 0 chr13 91852512 91852619 -10020550 - Charlie4 DNA MER1_type -3 1958 1841 996 229 34 19 chr13 91852632 91852898 -10020271 - Charlie4 DNA MER1_type -1684 277 8 313 294 69 0 chr13 91853356 91853458 -10019711 + MIR3 SINE MIR 63 171 -37 2122 126 0 0 chr13 91853622 91853915 -10019254 - AluSg SINE Alu -17 293 1 224 211 44 22 chr13 91854296 91854386 -10018783 + (TA)n Simple_repeat Simple_repeat 1 92 0 1790 139 10 23 chr13 91854809 91855110 -10018059 - AluSx SINE Alu -15 297 1 2628 16 0 13 chr13 91855198 91855506 -10017663 - AluY SINE Alu -7 304 1 2417 137 3 3 chr13 91857146 91857510 -10015659 + THE1B LTR MaLR 1 364 0 185 143 48 0 chr13 91857525 91857567 -10015602 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 24 53 0 0 chr13 91859635 91859673 -10013496 + AT_rich Low_complexity Low_complexity 1 38 0 950 286 193 33 chr13 91860009 91860676 -10012493 + L2 LINE L2 1256 2029 -1285 407 320 39 64 chr13 91860813 91861201 -10011968 + L1MEd LINE L1 531 908 -5297 274 340 88 15 chr13 91861601 91861930 -10011239 + L1MEd LINE L1 1398 1750 -4646 22 0 0 0 chr13 91861960 91861982 -10011187 + AT_rich Low_complexity Low_complexity 1 22 0 1521 129 129 8 chr13 91864123 91864386 -10008783 - AluSg1 SINE Alu -14 295 1 33 66 0 0 chr13 91865601 91865662 -10007507 + AT_rich Low_complexity Low_complexity 1 61 0 288 53 0 0 chr13 91865960 91865998 -10007171 + (CA)n Simple_repeat Simple_repeat 1 38 0 30 45 0 0 chr13 91867758 91867802 -10005367 + AT_rich Low_complexity Low_complexity 1 44 0 27 100 0 0 chr13 91868055 91868145 -10005024 + AT_rich Low_complexity Low_complexity 1 90 0 21 0 0 0 chr13 91869483 91869504 -10003665 + AT_rich Low_complexity Low_complexity 1 21 0 1356 232 92 12 chr13 91870107 91870434 -10002735 + MER68 LTR ERV1 185 537 -25 337 249 134 61 chr13 91871904 91872217 -10000952 + L1M4b LINE L1 1314 1791 -5156 4148 102 41 3 chr13 91872381 91873080 -10000089 - L1PA10 LINE L1 -91 6077 5345 432 175 0 0 chr13 91873150 91873247 -9999922 + (TG)n Simple_repeat Simple_repeat 2 98 0 420 20 0 0 chr13 91873331 91873380 -9999789 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 570 29 0 0 chr13 91878004 91878072 -9995097 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 294 29 0 0 chr13 91878088 91878123 -9995046 + (TG)n Simple_repeat Simple_repeat 2 36 0 613 175 97 26 chr13 91878355 91878394 -9994775 - L1MD2 LINE L1 -180 6179 6144 201 39 0 0 chr13 91878394 91878420 -9994749 + (TG)n Simple_repeat Simple_repeat 1 26 0 613 175 97 26 chr13 91878420 91878534 -9994635 - L1MD2 LINE L1 -215 6144 6015 1859 75 0 0 chr13 91878812 91879038 -9994131 - AluY SINE Alu -23 288 63 411 314 86 0 chr13 91879273 91879448 -9993721 - MIR3 SINE MIR 0 208 19 311 83 0 0 chr13 91880185 91880233 -9992936 - AluSc SINE Alu -2 297 250 11257 99 31 22 chr13 91880333 91882072 -9991097 + HERVH LTR ERV1 1242 2995 -4718 971 133 7 0 chr13 91882051 91882201 -9990968 + HERVH LTR ERV1 3140 3290 -4423 * 7569 129 15 9 chr13 91882191 91883903 -9989266 + HERVH LTR ERV1 3492 5233 -1858 1402 114 17 38 chr13 91883883 91884120 -9989049 + HERVH LTR ERV1 5588 5819 -1894 * 2306 109 48 13 chr13 91884120 91884497 -9988672 + HERVH LTR ERV1 7324 7713 0 2733 77 106 0 chr13 91884497 91884902 -9988267 + LTR7 LTR ERV1 1 448 -2 647 150 28 24 chr13 91884966 91885294 -9987875 + (TTATA)n Simple_repeat Simple_repeat 1 329 0 1808 180 3 13 chr13 91886106 91886417 -9986752 - AluJo SINE Alu -4 308 1 330 288 118 33 chr13 91887560 91887772 -9985397 - Charlie8 DNA MER1_type -2166 251 22 1078 295 168 40 chr13 91887829 91888462 -9984707 + MER50 LTR ERV1 1 714 -20 1993 274 30 22 chr13 91888759 91889534 -9983635 + MER20B DNA MER1_type 3 783 -1 1008 268 40 34 chr13 91891226 91891606 -9981563 - LTR40b LTR ERVL -80 382 1 24 0 0 0 chr13 91891883 91891907 -9981262 + AT_rich Low_complexity Low_complexity 1 24 0 2214 105 0 13 chr13 91892078 91892383 -9980786 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr13 91892453 91892476 -9980693 + AT_rich Low_complexity Low_complexity 1 23 0 442 256 1 0 chr13 91892544 91892668 -9980501 + Charlie5 DNA MER1_type 1 122 -2490 737 224 11 0 chr13 91892681 91892855 -9980314 + Charlie5 DNA MER1_type 2239 2414 -198 2140 124 65 8 chr13 91895567 91895922 -9977247 + THE1C LTR MaLR 1 375 0 34 0 0 0 chr13 91895953 91895987 -9977182 + AT_rich Low_complexity Low_complexity 1 34 0 1698 183 38 22 chr13 91897451 91897768 -9975401 + MER1B DNA MER1_type 18 339 0 2347 116 8 8 chr13 91897890 91898245 -9974924 - THE1A LTR MaLR 0 355 1 11571 102 3 1 chr13 91898245 91899821 -9973348 - THE1A-int LTR MaLR 0 1580 1 914 106 0 0 chr13 91899821 91899944 -9973225 - THE1A LTR MaLR 0 355 233 760 104 8 40 chr13 91899932 91900057 -9973112 - THE1A LTR MaLR -243 121 1 * 451 326 80 22 chr13 91900765 91900989 -9972180 - MLT1I LTR MaLR -67 342 106 701 239 7 13 chr13 91901087 91901242 -9971927 - Tigger7 DNA MER2_type -548 157 4 266 185 77 0 chr13 91901243 91901308 -9971861 + L1MB1 LINE L1 6106 6175 -14 457 277 41 56 chr13 91901350 91901545 -9971624 + MIR SINE MIR 15 206 -56 410 318 62 60 chr13 91901814 91902214 -9970955 - MLT1J LTR MaLR -110 401 1 669 241 218 0 chr13 91902383 91902649 -9970520 + MER5C DNA MER1_type 1 324 0 2095 132 0 3 chr13 91904231 91904527 -9968642 + AluSq SINE Alu 1 295 -18 38 61 0 0 chr13 91904561 91904627 -9968542 + AT_rich Low_complexity Low_complexity 1 66 0 14916 79 5 2 chr13 91906658 91908996 -9964173 + L1P2 LINE L1 3322 5669 -485 436 254 55 0 chr13 91909181 91909291 -9963878 - MER92C LTR ERV1 -438 116 1 4190 139 61 11 chr13 91909910 91910620 -9962549 + MER4D LTR ERV1 1 745 -158 23 0 0 0 chr13 91911741 91911764 -9961405 + AT_rich Low_complexity Low_complexity 1 23 0 309 183 0 0 chr13 91912743 91912803 -9960366 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 303 28 0 0 chr13 91913158 91913194 -9959975 + (ATG)n Simple_repeat Simple_repeat 2 37 0 598 287 135 10 chr13 91913342 91913631 -9959538 - HAL1 LINE L1 -796 1711 1387 279 261 39 8 chr13 91913765 91913895 -9959274 - HAL1 LINE L1 -1314 1193 1060 4418 139 73 30 chr13 91913993 91914829 -9958340 - MER4D LTR ERV1 0 872 1 258 206 0 0 chr13 91915883 91915946 -9957223 + (TATG)n Simple_repeat Simple_repeat 2 64 0 332 222 63 82 chr13 91916534 91916741 -9956428 - MER20B DNA MER1_type -47 736 534 815 182 36 24 chr13 91916852 91917017 -9956152 + MER82 DNA MER2_type 8 174 -479 1504 268 17 41 chr13 91917452 91917919 -9955250 + MER82 DNA MER2_type 198 653 0 486 311 15 24 chr13 91917975 91918181 -9954988 - MER20B DNA MER1_type -301 482 279 311 319 244 0 chr13 91918213 91918442 -9954727 - MLT1H LTR MaLR -16 533 249 281 331 8 24 chr13 91919570 91919697 -9953472 - L1ME LINE L1 -476 5645 5521 2365 128 5 10 chr13 91922864 91923247 -9949922 - L1MA4A LINE L1 -12 6291 5911 250 185 56 0 chr13 91923263 91923317 -9949852 - MIR SINE MIR -89 173 117 1737 136 4 8 chr13 91923892 91924157 -9949012 - AluSc SINE Alu -14 295 32 566 343 41 38 chr13 91924249 91924567 -9948602 + L2 LINE L2 1719 2037 -1277 998 177 54 12 chr13 91924865 91925087 -9948082 + MSTD LTR MaLR 124 396 0 216 326 48 37 chr13 91925296 91925472 -9947697 + MIR SINE MIR 39 214 -48 2558 175 20 0 chr13 91925561 91926019 -9947150 - LTR24 LTR ERV1 0 467 1 471 288 130 6 chr13 91926183 91926360 -9946809 + MIR SINE MIR 64 262 0 337 350 59 20 chr13 91926378 91926581 -9946588 - MIR SINE MIR -28 234 24 259 241 30 68 chr13 91926741 91926874 -9946295 - MIR SINE MIR -64 198 71 291 320 48 34 chr13 91926973 91927120 -9946049 - MIR SINE MIR -112 150 2 24 0 0 0 chr13 91927906 91927930 -9945239 + AT_rich Low_complexity Low_complexity 1 24 0 243 209 93 23 chr13 91927932 91928018 -9945151 - L1P LINE L1 -1131 5015 4924 217 327 140 19 chr13 91929667 91929774 -9943395 - MIR SINE MIR -127 135 16 314 276 205 19 chr13 91929855 91930011 -9943158 + MIR SINE MIR 48 232 -30 23 0 0 0 chr13 91930522 91930545 -9942624 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 91930819 91930871 -9942298 + AT_rich Low_complexity Low_complexity 1 52 0 27 0 0 0 chr13 91931392 91931419 -9941750 + AT_rich Low_complexity Low_complexity 1 27 0 411 251 54 25 chr13 91935123 91935268 -9937901 + MLT1E LTR MaLR 16 177 -460 890 159 0 0 chr13 91936513 91936645 -9936524 - AluJb SINE Alu -47 265 134 8701 205 11 22 chr13 91937487 91939805 -9933364 + L1PA16 LINE L1 3040 5315 -851 1870 83 79 11 chr13 91939805 91939934 -9933235 + L1PA10 LINE L1 5863 5982 -186 183 42 0 0 chr13 91939934 91939958 -9933211 + (GGGGA)n Simple_repeat Simple_repeat 1 24 0 1870 83 79 11 chr13 91939958 91940106 -9933063 + L1PA10 LINE L1 5982 6159 -9 8701 205 11 22 chr13 91940106 91940945 -9932224 + L1PA16 LINE L1 5315 6162 -4 937 149 63 11 chr13 91941524 91941699 -9931470 + MER101 LTR ERV1 1 184 -290 21 89 0 0 chr13 91941944 91942000 -9931169 + AT_rich Low_complexity Low_complexity 1 56 0 2108 100 3 7 chr13 91942235 91942525 -9930644 - AluSx SINE Alu -6 306 18 849 88 0 22 chr13 91942973 91943109 -9930060 + FLAM_C SINE Alu 1 133 0 2098 84 29 45 chr13 91944110 91944418 -9928751 + AluSp SINE Alu 1 303 -10 22 35 0 0 chr13 91945077 91945106 -9928063 + AT_rich Low_complexity Low_complexity 1 29 0 1773 293 70 59 chr13 91946999 91947997 -9925172 + MER69 DNA AcHobo 90 1098 -1428 271 233 202 85 chr13 91948047 91948270 -9924899 + MER69 DNA AcHobo 2277 2525 -1 207 0 0 0 chr13 91948437 91948460 -9924709 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1709 162 44 16 chr13 91949325 91949690 -9923479 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr13 91950391 91950422 -9922747 + AT_rich Low_complexity Low_complexity 1 31 0 204 306 35 0 chr13 91950931 91951016 -9922153 + L2 LINE L2 2203 2290 -1024 288 415 16 6 chr13 91951030 91951213 -9921956 + L2 LINE L2 2398 2582 -732 302 232 0 30 chr13 91951425 91951469 -9921700 + L1MC4 LINE L1 6608 6652 -1390 2859 53 3 0 chr13 91951469 91951828 -9921341 - L1PA5 LINE L1 -12 6142 5783 302 232 0 30 chr13 91951828 91951882 -9921287 + L1MC4 LINE L1 6652 6703 -1339 324 120 0 0 chr13 91951882 91951932 -9921237 + (TG)n Simple_repeat Simple_repeat 2 51 0 2103 84 0 4 chr13 91951932 91952206 -9920963 - AluY SINE Alu -38 273 1 1546 134 40 112 chr13 91952496 91952820 -9920349 + THE1C LTR MaLR 1 347 -28 315 0 0 0 chr13 91952820 91952855 -9920314 + (TA)n Simple_repeat Simple_repeat 1 35 0 2081 139 3 3 chr13 91952855 91953158 -9920011 - AluSx SINE Alu -5 307 5 1546 134 40 112 chr13 91953158 91953235 -9919934 + THE1C LTR MaLR 345 374 -1 44 75 0 0 chr13 91953339 91953432 -9919737 + AT_rich Low_complexity Low_complexity 1 93 0 410 157 0 14 chr13 91953450 91953520 -9919649 - FLAM SINE Alu -19 124 56 * 474 185 0 0 chr13 91953516 91953597 -9919572 - FLAM_A SINE Alu -36 106 26 292 263 95 26 chr13 91954894 91955126 -9918043 - L1M4 LINE L1 -3038 3108 2861 275 329 127 13 chr13 91955451 91955609 -9917560 + L2 LINE L2 1750 1925 -1389 40 59 0 0 chr13 91955611 91955679 -9917490 + AT_rich Low_complexity Low_complexity 1 68 0 308 323 83 44 chr13 91955707 91955936 -9917233 + L2 LINE L2 1968 2205 -1109 443 244 129 42 chr13 91956983 91957369 -9915800 - HAL1b LINE L1 -250 1098 679 186 128 0 0 chr13 91957975 91958014 -9915155 + (A)n Simple_repeat Simple_repeat 1 39 0 2642 82 112 0 chr13 91958184 91958587 -9914582 + LTR7 LTR ERV1 1 448 -2 4642 107 24 55 chr13 91958589 91959427 -9913742 + HERVH LTR ERV1 1 812 -6901 25 0 0 0 chr13 91959954 91959979 -9913190 + AT_rich Low_complexity Low_complexity 1 25 0 241 232 91 40 chr13 91960799 91960898 -9912271 + Tigger5 DNA MER2_type 6 109 -2214 1004 203 0 14 chr13 91960913 91961120 -9912049 + Tigger5 DNA MER2_type 2120 2323 0 2539 168 0 2 chr13 91961478 91961896 -9911273 - MSTA LTR MaLR -11 417 1 1864 152 5 59 chr13 91962119 91962494 -9910675 + THE1A LTR MaLR 1 355 0 25 31 0 0 chr13 91963970 91964002 -9909167 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 91964423 91964444 -9908725 + AT_rich Low_complexity Low_complexity 1 21 0 216 135 0 0 chr13 91964676 91964713 -9908456 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1860 166 81 39 chr13 91964853 91965262 -9907907 + MSTB LTR MaLR 1 426 0 1414 213 3 78 chr13 91965438 91965809 -9907360 + MLT1A1 LTR MaLR 23 365 0 2149 135 19 24 chr13 91965847 91966224 -9906945 + THE1C LTR MaLR 1 375 0 189 0 0 0 chr13 91966496 91966517 -9906652 + (A)n Simple_repeat Simple_repeat 1 21 0 245 331 22 0 chr13 91966596 91966735 -9906434 - L1M4 LINE L1 -1578 4568 4427 566 246 83 4 chr13 91967111 91967351 -9905818 + MER33 DNA MER1_type 26 284 -40 283 319 67 29 chr13 91967391 91967439 -9905730 - L1M4 LINE L1 -2191 3955 3910 1896 177 28 3 chr13 91967439 91967795 -9905374 - MLT1A1 LTR MaLR 0 365 1 283 319 67 29 chr13 91967795 91968060 -9905109 - L1M4 LINE L1 -2236 3910 3630 31 26 0 0 chr13 91968136 91968174 -9904995 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr13 91968364 91968397 -9904772 + AT_rich Low_complexity Low_complexity 1 33 0 359 300 91 62 chr13 91968680 91969164 -9904005 - L1MEd LINE L1 -5246 1170 673 1736 201 28 11 chr13 91969511 91969869 -9903300 + MLT2D LTR ERVL 2 365 -49 551 48 37 80 chr13 91969899 91970087 -9903082 + (TA)n Simple_repeat Simple_repeat 1 180 0 247 122 41 0 chr13 91970092 91970141 -9903028 + MLT2D LTR ERVL 462 512 -8 21 36 0 0 chr13 91971992 91972020 -9901149 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 91972057 91972078 -9901091 + AT_rich Low_complexity Low_complexity 1 21 0 289 311 118 37 chr13 91972194 91972239 -9900930 - MIR3 SINE MIR -3 205 165 2191 168 28 28 chr13 91972239 91972673 -9900496 + Tigger2a DNA MER2_type 1 434 0 289 311 118 37 chr13 91972673 91972762 -9900407 - MIR3 SINE MIR -43 165 60 437 60 84 48 chr13 91972844 91972927 -9900242 - MLT2A1 LTR ERVL 0 444 359 249 159 0 0 chr13 91972928 91972972 -9900197 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 321 184 0 0 chr13 91972973 91973022 -9900147 + LOR1a LTR ERV1 449 497 0 367 316 72 10 chr13 91973022 91973231 -9899938 - MLT2F LTR ERVL -281 382 161 329 206 0 15 chr13 91973260 91973328 -9899841 - MLT2F LTR ERVL -595 68 2 503 257 16 27 chr13 91973375 91973522 -9899647 + MLT2B2 LTR ERVL 331 477 -38 633 49 0 0 chr13 91973522 91973603 -9899566 + (TG)n Simple_repeat Simple_repeat 2 82 0 503 257 16 27 chr13 91973603 91973642 -9899527 + MLT2B2 LTR ERVL 477 515 0 1460 227 50 42 chr13 91973642 91974025 -9899144 - L1MEd LINE L1 -5821 605 220 341 331 17 17 chr13 91974045 91974226 -9898943 + L1M4 LINE L1 3125 3305 -2841 891 253 72 114 chr13 91974531 91975321 -9897848 - L1M4 LINE L1 -2163 3983 3227 1354 213 7 30 chr13 91975340 91975636 -9897533 + MLT1A1 LTR MaLR 74 362 -3 3367 246 88 41 chr13 91975640 91977237 -9895932 + MLT1A1-int LTR MaLR 2 1651 0 1795 201 11 8 chr13 91977237 91977601 -9895568 + MLT1A1 LTR MaLR 1 365 0 394 304 113 5 chr13 91977632 91977826 -9895343 + L2 LINE L2 3099 3313 0 190 306 0 28 chr13 91981116 91981188 -9891981 + MIR3 SINE MIR 121 190 -18 24 0 0 0 chr13 91981243 91981267 -9891902 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr13 91982128 91982151 -9891018 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr13 91982987 91983017 -9890152 + AT_rich Low_complexity Low_complexity 1 30 0 285 75 0 0 chr13 91986379 91986419 -9886750 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr13 91987657 91987679 -9885490 + AT_rich Low_complexity Low_complexity 1 22 0 522 236 83 101 chr13 91988106 91988382 -9884787 - L2 LINE L2 -3 3310 3040 350 70 56 0 chr13 91988549 91988620 -9884549 + (CA)n Simple_repeat Simple_repeat 2 76 0 311 368 115 27 chr13 91988854 91989150 -9884019 + L1MC/D LINE L1 5494 5815 -1993 533 192 4 2 chr13 91989160 91989399 -9883770 + AluJ SINE Alu 1 289 -23 2130 115 13 10 chr13 91989691 91990003 -9883166 + AluSq SINE Alu 1 313 0 206 64 0 85 chr13 91990046 91990093 -9883076 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 681 119 57 2 chr13 91990663 91990785 -9882384 + MSTA LTR MaLR 1 137 -227 282 361 34 0 chr13 91990970 91991089 -9882080 + L2 LINE L2 3173 3295 -18 184 358 100 30 chr13 91992922 91993193 -9879976 + L2 LINE L2 2432 2721 -593 26 30 0 0 chr13 91993943 91993976 -9879193 + AT_rich Low_complexity Low_complexity 1 33 0 1229 219 38 0 chr13 91994592 91994857 -9878312 - L1MC1 LINE L1 -6 6327 6053 28 48 0 0 chr13 91994974 91995016 -9878153 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr13 91995827 91995853 -9877316 + (TA)n Simple_repeat Simple_repeat 1 26 0 298 207 0 17 chr13 91995908 91996024 -9877145 + (TA)n Simple_repeat Simple_repeat 1 114 0 509 272 228 34 chr13 91996678 91997002 -9876167 - L2 LINE L2 -2132 1182 796 22 0 0 0 chr13 91999167 91999189 -9873980 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 91999801 91999825 -9873344 + AT_rich Low_complexity Low_complexity 1 24 0 2156 141 28 19 chr13 92000014 92000375 -9872794 - THE1B LTR MaLR 0 364 1 11580 99 3 1 chr13 92000375 92001951 -9871218 - THE1B-int LTR MaLR 0 1580 1 2057 150 33 22 chr13 92001951 92002311 -9870858 - THE1B LTR MaLR 0 364 1 23 54 0 0 chr13 92002699 92002736 -9870433 + AT_rich Low_complexity Low_complexity 1 37 0 5425 86 35 53 chr13 92003289 92004130 -9869039 + LTR12 LTR ERV1 1 825 -1 240 228 0 114 chr13 92004325 92004404 -9868765 + L1MCc LINE L1 384 453 -5970 332 287 96 19 chr13 92005004 92005278 -9867891 + L1MCc LINE L1 1319 1610 -4891 316 281 52 48 chr13 92005300 92005549 -9867620 + L1MCc LINE L1 3067 3316 -3625 1506 289 49 59 chr13 92005693 92006282 -9866887 + L1MCc LINE L1 4071 4647 -2294 5464 42 9 20 chr13 92006282 92006978 -9866191 - L1PA5 LINE L1 -8 6146 5459 1506 289 49 59 chr13 92006978 92007446 -9865723 + L1MCc LINE L1 4647 5118 -1823 866 290 91 9 chr13 92007563 92008611 -9864558 + L1MCc LINE L1 5631 6759 -157 233 315 0 0 chr13 92008548 92008637 -9864532 - L1MC4 LINE L1 -1337 6705 6617 * 580 244 66 20 chr13 92008668 92008865 -9864304 + L1ME2 LINE L1 5901 6106 -58 28 61 0 0 chr13 92008877 92008926 -9864243 + AT_rich Low_complexity Low_complexity 1 49 0 668 34 23 0 chr13 92009906 92009994 -9863175 - L1PA7 LINE L1 -4 6150 6061 21 82 0 0 chr13 92011975 92012024 -9861145 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr13 92012497 92012521 -9860648 + AT_rich Low_complexity Low_complexity 1 24 0 384 40 0 0 chr13 92013475 92013525 -9859644 + (CA)n Simple_repeat Simple_repeat 1 50 0 297 0 0 0 chr13 92013524 92013557 -9859612 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 207 0 0 0 chr13 92013808 92013831 -9859338 + (TG)n Simple_repeat Simple_repeat 1 23 0 1619 167 134 33 chr13 92013876 92014265 -9858904 - MSTA LTR MaLR 0 428 1 8660 144 52 35 chr13 92014265 92015818 -9857351 - MSTA-int LTR MaLR 0 1580 3 1504 174 49 75 chr13 92015820 92016205 -9856964 - THE1C LTR MaLR 0 375 1 648 70 0 0 chr13 92018987 92019073 -9854096 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 392 51 0 0 chr13 92019821 92019880 -9853289 + L1MA3 LINE L1 6247 6305 0 227 305 135 0 chr13 92019919 92020060 -9853109 + MER112 DNA MER1_type 67 226 -34 2077 112 0 46 chr13 92020072 92020377 -9852792 + AluSx SINE Alu 1 291 -21 266 253 27 13 chr13 92020779 92020854 -9852315 - L2 LINE L2 -17 3296 3221 621 72 0 0 chr13 92020866 92020949 -9852220 + (TTTTC)n Simple_repeat Simple_repeat 3 85 0 1611 204 7 3 chr13 92020958 92021267 -9851902 - AluJb SINE Alu -1 311 2 492 339 78 38 chr13 92021315 92021789 -9851380 - L2 LINE L2 -136 3177 2683 1893 140 7 10 chr13 92021789 92022089 -9851080 + AluSg SINE Alu 1 299 -11 492 339 78 38 chr13 92022089 92022217 -9850952 - L2 LINE L2 -630 2683 2562 35 24 0 0 chr13 92022552 92022594 -9850575 + AT_rich Low_complexity Low_complexity 1 42 0 363 302 0 0 chr13 92022927 92023023 -9850146 + MIR SINE MIR 124 219 -43 729 270 98 49 chr13 92023151 92023558 -9849611 + LTR16A LTR ERVL 18 444 -6 592 187 9 9 chr13 92025737 92025844 -9847325 + MER81 DNA DNA 4 110 -4 21 23 0 47 chr13 92026513 92026537 -9846632 + AT_rich Low_complexity Low_complexity 1 24 -17 2364 66 0 0 chr13 92026537 92026824 -9846345 + AluY SINE Alu 1 287 -24 21 23 0 47 chr13 92026824 92026842 -9846327 + AT_rich Low_complexity Low_complexity 24 41 0 366 61 0 0 chr13 92026925 92026974 -9846195 + (CA)n Simple_repeat Simple_repeat 1 49 0 193 330 154 35 chr13 92026983 92027438 -9845731 + L2 LINE L2 2453 2961 -353 649 286 35 0 chr13 92028693 92028864 -9844305 + MER8 DNA MER2_type 1 177 -62 283 243 0 14 chr13 92028900 92028970 -9844199 - Tigger2a DNA MER2_type -364 70 2 243 121 0 61 chr13 92029277 92029343 -9843826 + (CATA)n Simple_repeat Simple_repeat 2 63 0 454 216 69 110 chr13 92029644 92029889 -9843280 - L2 LINE L2 0 3313 3079 594 284 23 28 chr13 92030236 92030451 -9842718 + MIR SINE MIR 48 261 -1 2341 86 0 13 chr13 92031472 92031774 -9841395 + AluY SINE Alu 1 298 -13 261 0 0 0 chr13 92032196 92032225 -9840944 + (T)n Simple_repeat Simple_repeat 1 29 0 921 288 0 0 chr13 92033347 92033646 -9839523 + AluSc SINE Alu 1 299 0 368 321 45 17 chr13 92033666 92033874 -9839295 + MIR SINE MIR 46 259 -3 288 0 0 0 chr13 92034024 92034056 -9839113 + (TA)n Simple_repeat Simple_repeat 2 33 0 227 272 22 43 chr13 92034177 92034269 -9838900 + HAL1 LINE L1 816 905 -1602 2229 66 0 56 chr13 92034386 92034691 -9838478 - AluY SINE Alu -23 288 1 270 0 0 0 chr13 92035566 92035596 -9837573 + (T)n Simple_repeat Simple_repeat 1 30 0 293 310 78 17 chr13 92035720 92035836 -9837333 + MIR SINE MIR 20 142 -66 22 35 0 0 chr13 92036224 92036253 -9836916 + AT_rich Low_complexity Low_complexity 1 29 0 32 26 0 0 chr13 92038570 92038609 -9834560 + AT_rich Low_complexity Low_complexity 1 39 0 211 318 50 100 chr13 92039155 92039394 -9833775 - L2 LINE L2 -96 3217 2991 2254 127 11 30 chr13 92039394 92039765 -9833404 + THE1B LTR MaLR 1 364 0 558 366 115 14 chr13 92039808 92040441 -9832728 - L2 LINE L2 -740 2574 1878 205 355 16 24 chr13 92040479 92040603 -9832566 + L2 LINE L2 1759 1881 -1433 195 42 0 0 chr13 92041066 92041090 -9832079 + (T)n Simple_repeat Simple_repeat 1 24 0 376 325 62 12 chr13 92041366 92041526 -9831643 - MIR3 SINE MIR -9 199 32 539 187 0 0 chr13 92041681 92041788 -9831381 - L1PB2 LINE L1 -850 5296 5190 4874 120 19 54 chr13 92041789 92042034 -9831135 + L1PB2 LINE L1 5315 5567 -584 1969 144 20 7 chr13 92042034 92042339 -9830830 + AluSx SINE Alu 4 312 0 4874 120 19 54 chr13 92042339 92042666 -9830503 + L1PB2 LINE L1 5567 5848 -303 2197 62 0 84 chr13 92042666 92042989 -9830180 - AluY SINE Alu -15 296 1 4874 120 19 54 chr13 92042989 92043279 -9829890 + L1PB2 LINE L1 5848 6147 -4 1926 118 4 4 chr13 92043943 92044246 -9828923 - AluSg SINE Alu 0 303 1 28 29 0 0 chr13 92044540 92044575 -9828594 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr13 92044596 92044624 -9828545 + AT_rich Low_complexity Low_complexity 1 28 0 7334 41 0 0 chr13 92044910 92046179 -9826990 - L1PA3 LINE L1 0 6155 4884 4423 33 2 0 chr13 92046190 92046730 -9826439 + L1PA3 LINE L1 4337 4877 -1269 2338 98 0 0 chr13 92046756 92047063 -9826106 + AluSc SINE Alu 1 307 -2 180 0 0 0 chr13 92047139 92047159 -9826010 + (A)n Simple_repeat Simple_repeat 1 20 0 900 242 55 34 chr13 92047705 92048085 -9825084 - L1M4 LINE L1 -751 5395 5008 * 5081 132 32 0 chr13 92048083 92048896 -9824273 - L1PA16 LINE L1 -13 6153 5315 1144 263 47 90 chr13 92048915 92049661 -9823508 - L1M4 LINE L1 -1166 4980 4267 406 291 112 15 chr13 92049694 92049900 -9823269 - L1M4 LINE L1 -2037 4109 3884 1393 242 86 108 chr13 92049980 92050512 -9822657 - L1M4 LINE L1 -2887 3259 2717 412 153 14 14 chr13 92050512 92050584 -9822585 - Tigger5 DNA MER2_type -1 2322 2251 300 193 0 18 chr13 92050552 92050609 -9822560 - Tigger5 DNA MER2_type -2267 56 1 * 1393 242 86 108 chr13 92050609 92051012 -9822157 - L1M4 LINE L1 -3454 2692 2251 1863 275 45 15 chr13 92051033 92051833 -9821336 - L1M4 LINE L1 -3213 2933 2110 345 24 0 0 chr13 92051975 92052017 -9821152 + (TG)n Simple_repeat Simple_repeat 1 42 0 255 79 0 0 chr13 92053039 92053077 -9820092 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2045 254 44 51 chr13 92053256 92053917 -9819252 - MLT1D-int LTR MaLR -712 659 4 695 262 47 12 chr13 92053923 92054368 -9818801 - MLT1D LTR MaLR -3 502 1 23 33 0 0 chr13 92054389 92054419 -9818750 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr13 92054662 92054690 -9818479 + AT_rich Low_complexity Low_complexity 1 28 0 35 83 0 0 chr13 92054796 92054880 -9818289 + AT_rich Low_complexity Low_complexity 1 84 0 345 192 13 0 chr13 92055334 92055412 -9817757 + MER116 DNA Mariner 2 80 0 2317 121 26 0 chr13 92056578 92056924 -9816245 + THE1A LTR MaLR 1 355 0 879 213 0 0 chr13 92057774 92057934 -9815235 + FRAM SINE Alu 5 164 -12 609 303 30 45 chr13 92058987 92059251 -9813918 + MIR SINE MIR 2 261 -1 2109 120 3 0 chr13 92059301 92059600 -9813569 - AluSg SINE Alu -10 300 1 2044 110 27 17 chr13 92060002 92060303 -9812866 - AluSx SINE Alu -8 304 1 30 0 0 0 chr13 92060352 92060382 -9812787 + AT_rich Low_complexity Low_complexity 1 30 0 576 183 78 0 chr13 92060760 92060875 -9812294 - L1MC1 LINE L1 -2 6331 6208 1189 198 63 90 chr13 92060889 92061222 -9811947 - L1MD2 LINE L1 -13 6346 6023 378 265 161 71 chr13 92061266 92061477 -9811692 - MIR SINE MIR -31 231 2 338 372 99 9 chr13 92062622 92062845 -9810324 + MIR SINE MIR 1 243 -19 598 273 87 0 chr13 92063103 92063275 -9809894 - MER5A DNA MER1_type -2 187 1 1249 274 54 38 chr13 92063750 92064196 -9808973 - LTR40c LTR ERVL -12 453 1 421 262 245 34 chr13 92064261 92064498 -9808671 - L2 LINE L2 0 3313 3027 366 23 0 0 chr13 92065346 92065360 -9807809 + (TG)n Simple_repeat Simple_repeat 1 57 0 366 23 0 0 chr13 92065360 92065403 -9807766 + (TG)n Simple_repeat Simple_repeat 1 43 0 638 276 140 31 chr13 92066632 92067048 -9806121 + MLT1G1 LTR MaLR 10 568 -27 1028 242 34 72 chr13 92067096 92067567 -9805602 + LTR37B LTR ERV1 11 463 -5 4665 257 70 57 chr13 92067607 92068142 -9805027 + L1M4 LINE L1 1 528 -6116 234 0 0 0 chr13 92068142 92068168 -9805001 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 4665 257 70 57 chr13 92068168 92068955 -9804214 + L1M4 LINE L1 528 1303 -5341 1924 125 0 14 chr13 92068955 92069299 -9803870 + AluSq SINE Alu 1 340 0 216 0 0 0 chr13 92069300 92069324 -9803845 + (CA)n Simple_repeat Simple_repeat 2 25 0 4665 257 70 57 chr13 92069324 92071935 -9801234 + L1M4 LINE L1 1303 4192 -2452 207 0 0 0 chr13 92071935 92071958 -9801211 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4665 257 70 57 chr13 92071958 92072208 -9800961 + L1M4 LINE L1 4192 4437 -2207 1377 237 116 0 chr13 92073139 92073493 -9799676 - MSTD LTR MaLR 0 396 2 1687 166 73 17 chr13 92074121 92074476 -9798693 - THE1C LTR MaLR 0 375 1 5267 102 15 31 chr13 92074685 92075497 -9797672 + L1PA13 LINE L1 5361 6159 -4 238 100 17 67 chr13 92075497 92075557 -9797612 - Charlie5 DNA MER1_type -55 2557 2501 5275 7 2 0 chr13 92075988 92076581 -9796588 - L1HS LINE L1 0 6155 5562 231 61 0 0 chr13 92076854 92076887 -9796282 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 25 65 0 0 chr13 92077146 92077192 -9795977 + AT_rich Low_complexity Low_complexity 1 46 0 372 94 0 0 chr13 92078335 92078388 -9794781 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1713 173 10 10 chr13 92078391 92078698 -9794471 - AluSx SINE Alu 0 312 6 227 218 30 30 chr13 92079382 92079483 -9793686 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 312 347 117 9 chr13 92079662 92079875 -9793294 + MLT1L LTR MaLR 1 236 -379 191 185 0 19 chr13 92080228 92080282 -9792887 + (TG)n Simple_repeat Simple_repeat 2 54 0 252 86 0 0 chr13 92081239 92081274 -9791895 + (TG)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr13 92082010 92082054 -9791115 + AT_rich Low_complexity Low_complexity 1 44 0 336 324 40 29 chr13 92082140 92082313 -9790856 - MIR SINE MIR -73 189 15 777 140 29 0 chr13 92082765 92082901 -9790268 - L1MA5 LINE L1 -1 6299 6160 342 263 69 73 chr13 92083306 92083580 -9789589 - L1MCb LINE L1 -5770 275 3 22 0 0 0 chr13 92083721 92083743 -9789426 + AT_rich Low_complexity Low_complexity 1 22 0 298 370 138 19 chr13 92084280 92084851 -9788318 - L2 LINE L2 -926 2388 1750 251 257 9 37 chr13 92085046 92085155 -9788014 + CT-rich Low_complexity Low_complexity 3 108 0 180 0 0 0 chr13 92085569 92085589 -9787580 + (CA)n Simple_repeat Simple_repeat 1 20 0 1647 251 57 4 chr13 92086768 92087289 -9785880 - L1ME LINE L1 -390 5776 5238 5700 78 9 0 chr13 92087297 92088057 -9785112 + L1PA10 LINE L1 5401 6167 -1 283 172 35 0 chr13 92088092 92088150 -9785019 - MLT1D LTR MaLR 0 505 446 1241 200 0 0 chr13 92088150 92088395 -9784774 + AluJo SINE Alu 78 322 0 226 261 216 8 chr13 92088469 92088603 -9784566 - MLT1E2 LTR MaLR -92 534 373 2063 226 35 98 chr13 92088610 92089617 -9783552 - L1ME LINE L1 -1779 4367 3425 198 0 0 0 chr13 92090001 92090023 -9783146 + (TA)n Simple_repeat Simple_repeat 2 23 0 6624 82 5 7 chr13 92090067 92090961 -9782208 + HERVL-A1 LTR ERVL 4763 5654 0 2839 83 86 2 chr13 92090963 92091334 -9781835 + MLT2A1 LTR ERVL 3 412 -32 186 43 0 0 chr13 92091334 92091357 -9781812 + (TA)n Simple_repeat Simple_repeat 1 23 0 2839 83 86 2 chr13 92091357 92091393 -9781776 + MLT2A1 LTR ERVL 412 444 0 180 0 0 0 chr13 92091559 92091579 -9781590 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 306 0 0 0 chr13 92091578 92091612 -9781557 + (TA)n Simple_repeat Simple_repeat 1 34 0 242 309 44 0 chr13 92091707 92091775 -9781394 + MLT1E LTR MaLR 85 155 -438 1338 272 40 52 chr13 92091779 92092260 -9780909 + MLT1E LTR MaLR 119 593 0 269 295 115 38 chr13 92092878 92093061 -9780108 + MLT1J LTR MaLR 144 340 -171 285 310 123 46 chr13 92093432 92093565 -9779604 + MIR SINE MIR 31 174 -34 26 30 0 0 chr13 92093571 92093604 -9779565 + AT_rich Low_complexity Low_complexity 1 33 0 227 227 0 30 chr13 92094054 92094070 -9779099 + A-rich Low_complexity Low_complexity 4 19 -48 2356 90 0 0 chr13 92094070 92094381 -9778788 + AluY SINE Alu 1 311 0 227 227 0 30 chr13 92094381 92094430 -9778739 + A-rich Low_complexity Low_complexity 19 67 0 278 247 31 10 chr13 92095253 92095350 -9777819 + CT-rich Low_complexity Low_complexity 2 100 0 189 171 0 0 chr13 92096632 92096667 -9776502 + (CATA)n Simple_repeat Simple_repeat 2 36 0 27 39 0 19 chr13 92096744 92096779 -9776390 + AT_rich Low_complexity Low_complexity 1 36 -15 2404 180 7 0 chr13 92096779 92097224 -9775945 + L1PA16 LINE L1 5719 6166 0 27 39 0 19 chr13 92097224 92097240 -9775929 + AT_rich Low_complexity Low_complexity 36 51 0 291 93 0 0 chr13 92097651 92097694 -9775475 + (TA)n Simple_repeat Simple_repeat 2 44 0 293 249 48 43 chr13 92098234 92098372 -9774797 - MER58 DNA MER1_type -99 116 22 468 318 78 39 chr13 92098694 92099002 -9774167 - MLT1J2 LTR MaLR -130 320 1 2094 131 0 3 chr13 92099466 92099771 -9773398 + AluSx SINE Alu 4 307 -5 2037 127 33 28 chr13 92101514 92101572 -9771597 - THE1B LTR MaLR 0 364 308 186 43 0 0 chr13 92101572 92101595 -9771574 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2037 127 33 28 chr13 92101595 92101898 -9771271 - THE1B LTR MaLR -56 308 1 2285 181 29 2 chr13 92103618 92104028 -9769141 + MSTB LTR MaLR 1 421 -5 227 140 20 0 chr13 92104032 92104082 -9769087 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr13 92104726 92104749 -9768420 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr13 92104821 92104863 -9768306 + AT_rich Low_complexity Low_complexity 1 42 0 288 214 8 26 chr13 92105550 92105667 -9767502 + (TTTA)n Simple_repeat Simple_repeat 2 116 0 200 184 20 0 chr13 92107020 92107069 -9766100 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 33 25 0 0 chr13 92108092 92108132 -9765037 + AT_rich Low_complexity Low_complexity 1 40 0 371 39 0 0 chr13 92108344 92108396 -9764773 + AluY SINE Alu 246 291 -9 21 0 0 0 chr13 92108718 92108739 -9764430 + AT_rich Low_complexity Low_complexity 1 21 0 2071 145 0 0 chr13 92109010 92109320 -9763849 + AluSq SINE Alu 1 310 -3 22 70 0 0 chr13 92109520 92109563 -9763606 + AT_rich Low_complexity Low_complexity 1 43 0 1736 183 0 13 chr13 92109599 92109900 -9763269 - AluJo SINE Alu -5 307 11 355 230 0 30 chr13 92110122 92110222 -9762947 + HsTC2c DNA Tc2 4 100 -629 * 634 294 83 31 chr13 92110218 92110544 -9762625 + HsTC2c DNA Tc2 345 687 -42 33 25 0 0 chr13 92110860 92110900 -9762269 + AT_rich Low_complexity Low_complexity 1 40 0 212 0 36 0 chr13 92112206 92112234 -9760935 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 192 337 36 72 chr13 92114366 92114532 -9758637 - MIR3 SINE MIR -28 180 21 210 156 0 0 chr13 92115116 92115161 -9758008 + (CA)n Simple_repeat Simple_repeat 2 46 0 944 144 0 0 chr13 92117272 92117418 -9755751 - L1PA12 LINE L1 -3 6165 6020 24 53 0 0 chr13 92118032 92118070 -9755099 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr13 92118658 92118687 -9754482 + AT_rich Low_complexity Low_complexity 1 29 0 468 339 81 38 chr13 92124592 92125295 -9747874 - L2 LINE L2 -10 3303 2572 249 33 0 0 chr13 92125295 92125325 -9747844 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 611 324 258 20 chr13 92125502 92126608 -9746561 - L2 LINE L2 -780 2534 1166 1963 169 6 74 chr13 92126699 92126928 -9746241 - L1M2 LINE L1 -725 5566 5323 2104 88 32 3 chr13 92126928 92127376 -9745793 + AluSp SINE Alu 1 456 0 1963 169 6 74 chr13 92127376 92127772 -9745397 - L1M2 LINE L1 -968 5323 4967 331 358 68 24 chr13 92128376 92128583 -9744586 - MIR SINE MIR 0 262 47 24 53 0 0 chr13 92129682 92129720 -9743449 + AT_rich Low_complexity Low_complexity 1 38 0 252 360 79 34 chr13 92130749 92130927 -9742242 - MIR SINE MIR -56 206 21 454 309 171 0 chr13 92130948 92131100 -9742069 + MER5A DNA MER1_type 11 188 -1 182 406 0 0 chr13 92131869 92131938 -9741231 - L2 LINE L2 -1 3312 3244 1301 87 0 0 chr13 92132392 92132564 -9740605 + L1PA5 LINE L1 5980 6151 -3 247 125 0 42 chr13 92133314 92133362 -9739807 - Alu SINE Alu -13 289 244 2078 104 3 34 chr13 92133669 92133967 -9739202 - AluSg SINE Alu -21 289 1 4395 39 2 0 chr13 92133993 92134533 -9738636 - L1PA3 LINE L1 -1269 4877 4337 6313 32 1 1 chr13 92134544 92135701 -9737468 + L1PA3 LINE L1 4884 6041 -114 1611 141 53 11 chr13 92135925 92136209 -9736960 - THE1B LTR MaLR 0 364 69 417 117 0 0 chr13 92136588 92136648 -9736521 - THE1B LTR MaLR -304 60 1 604 308 40 9 chr13 92137134 92137361 -9735808 + MIR SINE MIR 15 248 -14 1871 156 3 3 chr13 92137362 92137651 -9735518 + AluJb SINE Alu 1 289 -23 22 70 0 0 chr13 92139464 92139507 -9733662 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr13 92140357 92140392 -9732777 + AT_rich Low_complexity Low_complexity 1 35 0 2164 114 10 0 chr13 92140673 92140979 -9732190 + AluY SINE Alu 1 309 -2 28 0 0 0 chr13 92141205 92141233 -9731936 + AT_rich Low_complexity Low_complexity 1 28 0 890 228 118 11 chr13 92141422 92141777 -9731392 - MER69 DNA AcHobo -32 2494 2102 225 100 33 17 chr13 92143822 92143882 -9729287 + T-rich Low_complexity Low_complexity 3 63 0 240 86 0 0 chr13 92144950 92144969 -9728200 + (CA)n Simple_repeat Simple_repeat 1 54 0 240 86 0 0 chr13 92144969 92145004 -9728165 + (CA)n Simple_repeat Simple_repeat 2 36 0 2065 78 30 34 chr13 92145328 92145624 -9727545 + AluY SINE Alu 1 295 -16 223 315 34 0 chr13 92145800 92145889 -9727280 - MIR SINE MIR -92 170 79 22 35 0 0 chr13 92146327 92146356 -9726813 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr13 92146678 92146713 -9726456 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr13 92146729 92146753 -9726416 + AT_rich Low_complexity Low_complexity 1 24 0 1607 275 96 17 chr13 92146860 92148024 -9725145 - L1MC4 LINE L1 -180 7862 6458 836 157 0 174 chr13 92148045 92148114 -9725055 - MLT2B1 LTR ERVL -13 502 423 204 40 0 0 chr13 92148114 92148139 -9725030 + (TG)n Simple_repeat Simple_repeat 2 26 0 836 157 0 174 chr13 92148139 92148305 -9724864 - MLT2B1 LTR ERVL -92 423 308 2143 127 0 0 chr13 92148432 92148740 -9724429 + AluSc SINE Alu 1 308 -1 22 35 0 0 chr13 92148893 92148922 -9724247 + AT_rich Low_complexity Low_complexity 1 29 0 2442 201 43 29 chr13 92149094 92149787 -9723382 + Charlie1 DNA MER1_type 2049 2751 -10 580 279 72 36 chr13 92149788 92150064 -9723105 - L1MEc LINE L1 -4091 2630 2345 677 265 54 11 chr13 92150072 92150332 -9722837 - L1MEc LINE L1 -4452 2088 1818 228 73 0 0 chr13 92150547 92150588 -9722581 + LTR66 LTR ERVL 399 439 -171 472 290 119 3 chr13 92151003 92151313 -9721856 - L1M4 LINE L1 -2201 3945 3600 987 206 45 65 chr13 92151371 92151663 -9721506 - L1MB2 LINE L1 -3 6168 5883 420 262 109 27 chr13 92151698 92151881 -9721288 - L1M4 LINE L1 -2689 3457 3260 30 0 0 0 chr13 92151885 92151915 -9721254 + AT_rich Low_complexity Low_complexity 1 30 0 1731 159 30 3 chr13 92151923 92152225 -9720944 - AluSx SINE Alu -2 310 1 1328 186 16 0 chr13 92152268 92152510 -9720659 - L1PA16 LINE L1 -8 6158 5913 976 155 30 0 chr13 92152510 92152678 -9720491 + L1PA16 LINE L1 5742 5914 -252 188 135 0 19 chr13 92153078 92153130 -9720039 + (TTTTTG)n Simple_repeat Simple_repeat 4 54 0 195 146 0 0 chr13 92153571 92153612 -9719557 + (TC)n Simple_repeat Simple_repeat 2 42 0 318 132 0 0 chr13 92154481 92154534 -9718635 + (CA)n Simple_repeat Simple_repeat 2 54 0 2104 123 3 0 chr13 92154733 92155033 -9718136 - AluSx SINE Alu -11 301 1 2849 143 34 34 chr13 92156623 92156652 -9716517 + MER50 LTR ERV1 1 29 -705 180 0 0 0 chr13 92156652 92156672 -9716497 + (CAGGG)n Simple_repeat Simple_repeat 5 24 0 2849 143 34 34 chr13 92156672 92157179 -9715990 + MER50 LTR ERV1 28 537 -197 246 224 17 43 chr13 92158331 92158447 -9714722 - L1ME4a LINE L1 -3 6118 6006 2346 107 0 0 chr13 92158543 92158852 -9714317 + AluSc SINE Alu 1 309 0 305 268 62 36 chr13 92161726 92161838 -9711331 - MLT1E LTR MaLR -360 233 119 306 0 0 0 chr13 92162005 92162039 -9711130 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr13 92162038 92162058 -9711111 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 186 43 0 0 chr13 92162264 92162287 -9710882 + (TA)n Simple_repeat Simple_repeat 1 23 0 2874 81 0 0 chr13 92162288 92162658 -9710511 - MLT2A1 LTR ERVL -72 372 3 5199 132 11 11 chr13 92162660 92163526 -9709643 - HERVL-A1 LTR ERVL 0 5654 4789 276 303 173 31 chr13 92164865 92165189 -9707980 - L2 LINE L2 -353 2961 2592 291 93 0 0 chr13 92165657 92165700 -9707469 + (TA)n Simple_repeat Simple_repeat 1 43 0 241 198 55 66 chr13 92166292 92166383 -9706786 - MER58 DNA MER1_type -100 115 26 480 293 86 49 chr13 92166714 92167018 -9706151 - MLT1J2 LTR MaLR -130 320 6 225 108 0 27 chr13 92167523 92167560 -9705609 + MLT2C2 LTR ERVL 416 451 -13 1284 276 97 31 chr13 92167581 92168758 -9704411 + L1MC4 LINE L1 6458 7862 -180 24 0 0 0 chr13 92168865 92168889 -9704280 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr13 92169278 92169307 -9703862 + AT_rich Low_complexity Low_complexity 1 29 0 1731 119 58 11 chr13 92169813 92170090 -9703079 - AluSg SINE Alu -20 290 1 194 128 26 0 chr13 92170964 92171003 -9702166 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 21 95 0 0 chr13 92171469 92171532 -9701637 + AT_rich Low_complexity Low_complexity 1 63 0 599 76 0 0 chr13 92172002 92172081 -9701088 - HERVL LTR ERVL -813 4841 4763 180 0 0 0 chr13 92172126 92172146 -9701023 + (TA)n Simple_repeat Simple_repeat 2 21 0 446 231 45 49 chr13 92172533 92172776 -9700393 + L1M4 LINE L1 3425 3666 -2480 1561 234 34 79 chr13 92172839 92173550 -9699619 + L1M4 LINE L1 3689 4367 -1779 913 218 5 15 chr13 92173767 92174004 -9699165 - AluJo SINE Alu 0 322 88 521 226 5 43 chr13 92174784 92174970 -9698199 + L1MC3 LINE L1 7605 7783 -2 311 301 24 0 chr13 92175028 92175111 -9698058 + AluJb SINE Alu 50 134 -168 462 140 60 0 chr13 92175123 92175223 -9697946 - L1MA9 LINE L1 -1 6311 6206 282 210 40 48 chr13 92175263 92175387 -9697782 + L1MC4 LINE L1 7920 8042 0 524 196 33 20 chr13 92175917 92176070 -9697099 - L1PA7 LINE L1 -6 6148 5994 450 189 9 57 chr13 92176794 92176900 -9696269 - MER81 DNA DNA -4 110 10 3794 82 12 37 chr13 92178644 92179270 -9693899 - L1PA4 LINE L1 -141 6014 5385 26 0 0 0 chr13 92179502 92179528 -9693641 + AT_rich Low_complexity Low_complexity 1 26 0 201 275 9 37 chr13 92181634 92181743 -9691426 + CT-rich Low_complexity Low_complexity 3 108 0 180 0 0 0 chr13 92182161 92182181 -9690988 + (CA)n Simple_repeat Simple_repeat 1 20 0 920 282 16 12 chr13 92183380 92183699 -9689470 - L1ME LINE L1 -390 5776 5457 669 350 13 19 chr13 92183923 92184269 -9688900 + MER90 LTR ERV1 240 555 -20 24 100 0 0 chr13 92184652 92184732 -9688437 + AT_rich Low_complexity Low_complexity 1 80 0 1289 209 52 66 chr13 92184773 92185137 -9688032 + MLT1A1 LTR MaLR 1 359 -6 22 0 0 0 chr13 92185288 92185310 -9687859 + AT_rich Low_complexity Low_complexity 1 22 0 219 413 28 33 chr13 92185481 92185842 -9687327 - L2 LINE L2 -376 2938 2580 302 357 75 63 chr13 92185899 92186314 -9686855 - L2 LINE L2 -907 2407 1988 333 0 0 0 chr13 92186982 92187019 -9686150 + (TA)n Simple_repeat Simple_repeat 1 37 0 227 272 22 43 chr13 92187143 92187235 -9685934 + HAL1 LINE L1 816 905 -1602 2146 68 0 62 chr13 92187353 92187660 -9685509 - AluY SINE Alu -23 288 1 2357 303 135 40 chr13 92188405 92190207 -9682962 + L2 LINE L2 774 2745 -569 236 253 66 11 chr13 92190645 92190736 -9682433 + MIR SINE MIR 166 261 -1 206 266 16 0 chr13 92190966 92191030 -9682139 + (TA)n Simple_repeat Simple_repeat 2 66 0 263 281 12 12 chr13 92197429 92197511 -9675658 + GA-rich Low_complexity Low_complexity 3 84 0 2102 108 0 10 chr13 92198341 92198704 -9674465 - AluY SINE Alu 0 360 1 26 30 0 0 chr13 92199172 92199205 -9673964 + AT_rich Low_complexity Low_complexity 1 33 0 272 280 145 69 chr13 92199211 92199344 -9673825 - MIR SINE MIR -34 174 31 256 273 120 44 chr13 92199724 92199907 -9673262 - MLT1J LTR MaLR -171 340 144 1617 192 0 17 chr13 92200117 92200419 -9672750 - AluJo SINE Alu -5 307 11 338 250 0 0 chr13 92200640 92200724 -9672445 + HsTC2c DNA Tc2 3 86 -643 634 294 83 31 chr13 92200738 92201064 -9672105 + HsTC2c DNA Tc2 345 687 -42 34 42 0 0 chr13 92201381 92201429 -9671740 + AT_rich Low_complexity Low_complexity 1 48 0 212 0 36 0 chr13 92202758 92202786 -9670383 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 192 337 36 72 chr13 92204947 92205113 -9668056 - MIR3 SINE MIR -28 180 21 24 53 0 0 chr13 92206994 92207032 -9666137 + AT_rich Low_complexity Low_complexity 1 38 0 914 143 0 7 chr13 92207659 92207806 -9665363 + L1PA12 LINE L1 6020 6165 -3 210 156 0 0 chr13 92209932 92209977 -9663192 + (TG)n Simple_repeat Simple_repeat 2 46 0 372 94 0 0 chr13 92210615 92210668 -9662501 + (TTCC)n Simple_repeat Simple_repeat 3 55 0 1565 168 13 23 chr13 92210671 92210981 -9662188 - AluSx SINE Alu 0 312 6 227 218 30 30 chr13 92211672 92211773 -9661396 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 232 237 17 0 chr13 92212527 92212586 -9660583 + (TG)n Simple_repeat Simple_repeat 2 61 0 252 86 0 0 chr13 92213556 92213591 -9659578 + (TG)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr13 92214326 92214370 -9658799 + AT_rich Low_complexity Low_complexity 1 44 0 308 322 40 35 chr13 92214461 92214635 -9658534 - MIR SINE MIR -73 189 15 751 144 30 0 chr13 92215104 92215236 -9657933 - L1MA5 LINE L1 -5 6295 6160 277 259 64 82 chr13 92215642 92215922 -9657247 - L1MCa LINE L1 -5770 334 3 24 32 0 0 chr13 92216057 92216088 -9657081 + AT_rich Low_complexity Low_complexity 1 31 0 213 366 34 45 chr13 92216634 92216992 -9656177 - L2 LINE L2 -926 2388 2035 21 71 0 0 chr13 92217563 92217605 -9655564 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr13 92217738 92217777 -9655392 + AT_rich Low_complexity Low_complexity 1 39 0 1495 179 8 65 chr13 92218025 92218411 -9654758 - THE1B LTR MaLR 0 364 1 182 200 0 25 chr13 92218678 92218718 -9654451 - MIR SINE MIR 0 262 224 32 79 0 26 chr13 92218835 92218949 -9654220 + AT_rich Low_complexity Low_complexity 1 111 0 243 88 50 25 chr13 92218962 92219042 -9654127 + (TA)n Simple_repeat Simple_repeat 2 83 0 209 143 41 31 chr13 92219264 92219362 -9653807 + (TA)n Simple_repeat Simple_repeat 1 99 0 1856 166 2 50 chr13 92219370 92219787 -9653382 - MLT2A1 LTR ERVL -47 397 1 312 300 77 41 chr13 92219796 92219966 -9653203 - MIR SINE MIR -71 191 16 2802 136 35 45 chr13 92220336 92220916 -9652253 - MER4B LTR ERV1 -36 574 1 21 0 0 0 chr13 92221308 92221329 -9651840 + AT_rich Low_complexity Low_complexity 1 21 0 497 234 48 60 chr13 92222495 92222550 -9650619 + L1M4 LINE L1 3843 3897 -2249 4006 127 14 20 chr13 92222550 92223242 -9649927 + LTR12 LTR ERV1 1 688 0 497 234 48 60 chr13 92223242 92223434 -9649735 + L1M4 LINE L1 3897 4087 -2059 3844 267 68 58 chr13 92223730 92224270 -9648899 + L1M4 LINE L1 1 534 -6110 185 0 0 39 chr13 92224270 92224296 -9648873 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3844 267 68 58 chr13 92224296 92225093 -9648076 + L1M4 LINE L1 534 1322 -5322 1672 149 0 17 chr13 92225093 92225438 -9647731 + AluSq SINE Alu 1 340 0 216 0 0 0 chr13 92225439 92225463 -9647706 + (CA)n Simple_repeat Simple_repeat 2 25 0 3844 267 68 58 chr13 92225463 92228094 -9645075 + L1M4 LINE L1 1322 4185 -2459 207 0 0 0 chr13 92228094 92228117 -9645052 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3844 267 68 58 chr13 92228117 92228373 -9644796 + L1M4 LINE L1 4185 4437 -2207 548 246 75 48 chr13 92229307 92229675 -9643494 - MSTD LTR MaLR 0 396 2 1694 164 76 15 chr13 92230308 92230649 -9642520 - THE1C LTR MaLR 0 375 14 3962 105 13 41 chr13 92230881 92231512 -9641657 + L1PA13 LINE L1 5361 5973 -190 32 26 0 0 chr13 92232080 92232119 -9641050 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr13 92234470 92234499 -9638670 + AT_rich Low_complexity Low_complexity 1 29 0 234 333 77 26 chr13 92234889 92235006 -9638163 - MIR SINE MIR -66 142 20 261 0 0 0 chr13 92235131 92235160 -9638009 + (A)n Simple_repeat Simple_repeat 1 29 0 1957 85 0 38 chr13 92235592 92235909 -9637260 - AluYb8 SINE Alu -13 305 1 577 275 23 37 chr13 92236938 92237156 -9636013 - MIR SINE MIR -1 261 47 381 232 61 114 chr13 92237508 92237754 -9635415 + L2 LINE L2 3079 3311 -2 528 301 5 59 chr13 92238165 92238368 -9634801 + L1MC/D LINE L1 5400 5591 -2217 271 320 25 25 chr13 92238430 92238561 -9634608 + MER63 DNA MER1_type 671 1655 -33 438 256 75 25 chr13 92238592 92238752 -9634417 + MLT1F LTR MaLR 367 534 -8 1791 151 62 29 chr13 92239188 92239573 -9633596 + MER48 LTR ERV1 1 398 0 23 33 0 0 chr13 92240354 92240384 -9632785 + AT_rich Low_complexity Low_complexity 1 30 0 615 253 0 44 chr13 92241216 92241398 -9631771 - MER58A DNA MER1_type -44 180 7 355 340 102 30 chr13 92241456 92241827 -9631342 + L1MEc LINE L1 791 1188 -5208 255 288 108 7 chr13 92241838 92241977 -9631192 + L1MEc LINE L1 1304 1456 -4759 22 35 0 0 chr13 92242133 92242162 -9631007 + AT_rich Low_complexity Low_complexity 1 29 0 249 202 11 22 chr13 92243153 92243242 -9629927 + GA-rich Low_complexity Low_complexity 4 91 0 21 36 0 0 chr13 92243379 92243407 -9629762 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 92244707 92244729 -9628440 + AT_rich Low_complexity Low_complexity 1 22 0 1857 130 3 13 chr13 92244928 92245236 -9627933 - AluSc SINE Alu 0 309 5 30 45 0 0 chr13 92246299 92246343 -9626826 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chr13 92246608 92246639 -9626530 + AT_rich Low_complexity Low_complexity 1 31 0 1389 185 36 32 chr13 92247322 92247603 -9625566 + AluJo SINE Alu 1 282 -30 333 62 0 0 chr13 92247612 92247660 -9625509 + (TA)n Simple_repeat Simple_repeat 2 49 0 240 242 11 11 chr13 92247660 92247751 -9625418 + L1MC4 LINE L1 6614 6704 -1338 575 316 35 9 chr13 92248054 92248282 -9624887 + MIR SINE MIR 15 248 -14 1206 172 7 50 chr13 92248283 92248585 -9624584 + AluJb SINE Alu 1 289 -23 22 70 0 0 chr13 92250442 92250485 -9622684 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr13 92251336 92251371 -9621798 + AT_rich Low_complexity Low_complexity 1 35 0 1817 131 6 16 chr13 92251652 92251964 -9621205 + AluY SINE Alu 1 309 -2 28 0 0 0 chr13 92252192 92252220 -9620949 + AT_rich Low_complexity Low_complexity 1 28 0 844 230 118 17 chr13 92252411 92252768 -9620401 - MER69 DNA AcHobo -32 2494 2102 192 117 33 17 chr13 92254854 92254914 -9618255 + T-rich Low_complexity Low_complexity 3 63 0 240 86 0 0 chr13 92255996 92256015 -9617154 + (CA)n Simple_repeat Simple_repeat 1 54 0 240 86 0 0 chr13 92256015 92256050 -9617119 + (CA)n Simple_repeat Simple_repeat 2 36 0 1767 99 26 50 chr13 92256376 92256678 -9616491 + AluY SINE Alu 1 295 -16 188 317 58 29 chr13 92256844 92256948 -9616221 - MIR SINE MIR -77 185 79 279 217 85 47 chr13 92257055 92257161 -9616008 - L1M4 LINE L1 -1029 5117 5008 * 4430 140 33 17 chr13 92257159 92257985 -9615184 - L1PA16 LINE L1 -13 6153 5315 841 263 70 84 chr13 92258093 92258763 -9614406 - L1M4 LINE L1 -1219 4927 4267 376 290 111 19 chr13 92258797 92259004 -9614165 - L1M4 LINE L1 -2037 4109 3884 1086 249 94 28 chr13 92259084 92259627 -9613542 - L1M4 LINE L1 -2887 3259 2681 412 153 14 14 chr13 92259627 92259699 -9613470 - Tigger5 DNA MER2_type -1 2322 2251 300 193 0 18 chr13 92259667 92259724 -9613445 - Tigger5 DNA MER2_type -2267 56 1 * 669 292 44 19 chr13 92259771 92260138 -9613031 - L1M4 LINE L1 -3532 2614 2239 1594 276 43 25 chr13 92260151 92260960 -9612209 - L1M4 LINE L1 -3213 2933 2110 345 24 0 0 chr13 92261104 92261146 -9612023 + (TG)n Simple_repeat Simple_repeat 1 42 0 1778 250 46 66 chr13 92262397 92263066 -9610103 - MLT1D-int LTR MaLR -712 659 4 589 240 52 10 chr13 92263072 92263264 -9609905 - MLT1D LTR MaLR -3 502 303 661 276 45 0 chr13 92263319 92263518 -9609651 - MLT1D LTR MaLR -297 208 1 22 35 0 0 chr13 92263539 92263568 -9609601 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 92263811 92263839 -9609330 + AT_rich Low_complexity Low_complexity 1 28 0 35 83 0 0 chr13 92263945 92264029 -9609140 + AT_rich Low_complexity Low_complexity 1 84 0 345 192 13 0 chr13 92264487 92264565 -9608604 + MER116 DNA Mariner 2 80 0 2181 132 26 6 chr13 92265769 92266111 -9607058 + THE1A LTR MaLR 7 355 0 663 197 13 26 chr13 92266977 92267129 -9606040 + FRAM SINE Alu 15 164 -12 356 265 42 53 chr13 92267762 92268026 -9605143 + L1M4 LINE L1 5131 5391 -755 189 0 0 0 chr13 92268586 92268607 -9604562 + (T)n Simple_repeat Simple_repeat 1 21 0 2071 109 0 13 chr13 92268683 92268994 -9604175 - AluSc SINE Alu -2 307 1 3844 59 4 16 chr13 92269020 92269565 -9603604 - L1HS LINE L1 -1269 4877 4340 5921 83 1 18 chr13 92269583 92270876 -9602293 + L1HS LINE L1 4886 6155 0 21 36 0 0 chr13 92271165 92271193 -9601976 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr13 92271222 92271249 -9601920 + AT_rich Low_complexity Low_complexity 1 27 0 1570 135 3 28 chr13 92271547 92271829 -9601340 + AluSg SINE Alu 1 275 -35 198 0 0 0 chr13 92271835 92271857 -9601312 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4742 121 20 60 chr13 92272529 92272820 -9600349 - L1PB2 LINE L1 -4 6147 5846 1968 80 0 92 chr13 92272820 92273146 -9600023 + AluY SINE Alu 1 296 -15 4742 121 20 60 chr13 92273146 92273471 -9599698 - L1PB2 LINE L1 -305 5846 5574 1886 150 19 13 chr13 92273471 92273778 -9599391 - AluSx SINE Alu 0 312 4 4742 121 20 60 chr13 92273778 92274028 -9599141 - L1PB2 LINE L1 -577 5574 5315 401 194 0 37 chr13 92274032 92274140 -9599029 + L1PB2 LINE L1 5193 5296 -850 343 329 56 12 chr13 92274296 92274457 -9598712 + MIR3 SINE MIR 32 199 -9 195 42 0 0 chr13 92274736 92274760 -9598409 + (A)n Simple_repeat Simple_repeat 1 24 0 190 326 11 22 chr13 92275260 92275349 -9597820 - L2 LINE L2 -1468 1846 1759 485 331 81 55 chr13 92275397 92276028 -9597141 + L2 LINE L2 1928 2574 -740 1813 138 12 41 chr13 92276071 92276391 -9596778 - THE1B LTR MaLR 0 364 54 258 328 23 38 chr13 92276494 92276625 -9596544 + MLT1I LTR MaLR 161 289 -120 584 264 70 80 chr13 92279218 92279905 -9593264 - L1MC5 LINE L1 -36 7925 7246 410 323 80 28 chr13 92280753 92281153 -9592016 - MLT1K LTR MaLR 0 588 168 1885 101 0 37 chr13 92281634 92281932 -9591237 - AluSc SINE Alu -22 287 1 461 192 58 17 chr13 92282550 92282670 -9590499 - MER45A DNA AcHobo -5 173 49 3101 133 19 28 chr13 92283477 92284117 -9589052 + L1MA1 LINE L1 5668 6301 -1 26 0 0 0 chr13 92284118 92284144 -9589025 + AT_rich Low_complexity Low_complexity 1 26 0 1950 123 3 16 chr13 92284158 92284467 -9588702 + AluSg SINE Alu 5 309 -1 22 35 0 0 chr13 92284620 92284649 -9588520 + AT_rich Low_complexity Low_complexity 1 29 0 1927 194 40 34 chr13 92284830 92285360 -9587809 + Charlie1 DNA MER1_type 2052 2584 -177 1592 141 53 11 chr13 92285587 92285871 -9587298 - THE1B LTR MaLR 0 364 69 1157 105 0 12 chr13 92286834 92287005 -9586164 - L1PA5 LINE L1 -7 6147 5979 182 406 0 0 chr13 92287477 92287546 -9585623 + L2 LINE L2 3244 3312 -1 437 307 170 7 chr13 92288329 92288482 -9584687 - MER5A DNA MER1_type -1 188 11 260 356 67 33 chr13 92288503 92288683 -9584486 + MIR SINE MIR 21 206 -56 229 313 79 70 chr13 92290904 92291118 -9582051 + MIR SINE MIR 47 262 0 1654 196 2 33 chr13 92291734 92292131 -9581038 + L1 LINE L1 4967 5351 -795 1074 68 19 6 chr13 92292132 92292293 -9580876 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1957 121 0 14 chr13 92292295 92292592 -9580577 - AluSp SINE Alu -20 293 1 21 0 0 0 chr13 92292867 92292888 -9580281 + AT_rich Low_complexity Low_complexity 1 21 0 311 37 0 41 chr13 92293211 92293265 -9579904 - AluY SINE Alu -9 292 247 21 89 0 0 chr13 92293306 92293362 -9579807 + AT_rich Low_complexity Low_complexity 1 56 0 36 23 0 0 chr13 92293484 92293527 -9579642 + AT_rich Low_complexity Low_complexity 1 43 0 288 214 8 26 chr13 92295979 92296096 -9577073 + (TAAA)n Simple_repeat Simple_repeat 2 116 0 26 64 0 0 chr13 92296789 92296836 -9576333 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr13 92296907 92296932 -9576237 + AT_rich Low_complexity Low_complexity 1 25 0 227 140 20 0 chr13 92297587 92297637 -9575532 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2001 200 26 12 chr13 92297641 92298056 -9575113 - MSTB LTR MaLR -5 421 1 1895 128 33 38 chr13 92299789 92300095 -9573074 + THE1B LTR MaLR 1 306 -58 186 43 0 0 chr13 92300095 92300118 -9573051 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1895 128 33 38 chr13 92300118 92300177 -9572992 + THE1B LTR MaLR 306 364 0 1915 141 0 16 chr13 92301925 92302237 -9570932 - AluSx SINE Alu -5 307 1 2044 110 27 17 chr13 92302644 92302945 -9570224 - AluSx SINE Alu -8 304 1 30 0 0 0 chr13 92302994 92303024 -9570145 + AT_rich Low_complexity Low_complexity 1 30 0 535 181 78 9 chr13 92303413 92303529 -9569640 - L1MC1 LINE L1 -2 6331 6208 1079 210 63 93 chr13 92303543 92303877 -9569292 - L1MD2 LINE L1 -13 6346 6023 288 346 47 0 chr13 92304014 92304141 -9569028 - MIR SINE MIR -128 134 2 347 362 98 13 chr13 92305312 92305536 -9567633 + MIR SINE MIR 1 243 -19 598 273 87 0 chr13 92305798 92305970 -9567199 - MER5A DNA MER1_type -2 187 1 1146 278 56 47 chr13 92306449 92306898 -9566271 - LTR40c LTR ERVL -12 453 1 351 279 216 45 chr13 92306963 92307232 -9565937 - L2 LINE L2 0 3313 2999 387 303 0 0 chr13 92308013 92308077 -9565092 + GA-rich Low_complexity Low_complexity 1 64 -81 366 23 0 0 chr13 92308077 92308120 -9565049 + (TG)n Simple_repeat Simple_repeat 1 43 0 387 303 0 0 chr13 92308120 92308200 -9564969 + GA-rich Low_complexity Low_complexity 63 145 0 530 267 164 38 chr13 92309541 92309803 -9563366 + MLT1G1 LTR MaLR 274 568 -27 26 30 0 0 chr13 92411096 92411129 -9462040 + AT_rich Low_complexity Low_complexity 1 33 0 207 282 39 39 chr13 92411261 92411339 -9461830 + MIR SINE MIR 121 198 -64 2088 285 82 33 chr13 92412711 92413645 -9459524 + L1MCb LINE L1 8 987 -5058 382 265 28 99 chr13 92413857 92414038 -9459131 + LTR41 LTR ERVL 459 626 -147 261 236 7 29 chr13 92414038 92414178 -9458991 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 31 26 0 0 chr13 92414270 92414308 -9458861 + AT_rich Low_complexity Low_complexity 1 38 0 237 243 9 54 chr13 92414308 92414419 -9458750 + LTR41 LTR ERVL 662 767 -6 254 149 21 0 chr13 92414440 92414487 -9458682 + MLT1G1 LTR MaLR 524 571 -19 341 296 8 68 chr13 92414634 92414766 -9458403 + MIR SINE MIR 110 233 -29 21 36 0 0 chr13 92414770 92414798 -9458371 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr13 92415136 92415176 -9457993 + AT_rich Low_complexity Low_complexity 1 40 0 1168 87 24 10 chr13 92415644 92415929 -9457240 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr13 92416227 92416253 -9456916 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 580 14 0 0 chr13 92416253 92416323 -9456846 - L1PA3 LINE L1 -7 6148 6079 473 308 20 63 chr13 92416525 92416762 -9456407 + MIR SINE MIR 4 233 -29 288 319 27 89 chr13 92417209 92417547 -9455622 - MLT1G1-int LTR MaLR -770 601 285 858 283 111 32 chr13 92417717 92418220 -9454949 - MLT1G1 LTR MaLR -37 518 2 258 289 67 114 chr13 92418403 92418674 -9454495 + MLT1B-int LTR MaLR 1029 1280 -91 1534 185 19 93 chr13 92418674 92419091 -9454078 + MLT1B LTR MaLR 5 390 0 258 289 67 114 chr13 92419091 92419179 -9453990 + MLT1B-int LTR MaLR 1280 1371 0 463 243 191 17 chr13 92419179 92419347 -9453822 + MLT1G1 LTR MaLR 1 198 -397 2418 104 0 0 chr13 92419347 92419674 -9453495 + THE1A LTR MaLR 1 327 -28 661 334 85 13 chr13 92419675 92420052 -9453117 + MLT1G1 LTR MaLR 192 595 0 207 0 0 0 chr13 92420797 92420820 -9452349 + (A)n Simple_repeat Simple_repeat 1 23 0 501 213 57 21 chr13 92422804 92422945 -9450224 + L2 LINE L2 3160 3305 -8 1283 190 13 51 chr13 92424748 92425059 -9448110 + AluJo SINE Alu 1 299 -3 21 0 0 0 chr13 92425355 92425376 -9447793 + AT_rich Low_complexity Low_complexity 1 21 0 454 153 0 0 chr13 92425520 92425605 -9447564 + L1MA2 LINE L1 6220 6304 0 577 201 0 50 chr13 92426903 92427042 -9446127 - MER20 DNA MER1_type -15 204 73 1889 183 23 9 chr13 92427096 92427446 -9445723 - MLT1A1 LTR MaLR 0 365 11 603 243 20 0 chr13 92431448 92431600 -9441569 + FRAM SINE Alu 19 173 -3 284 294 16 8 chr13 92432804 92432930 -9440239 + (TA)n Simple_repeat Simple_repeat 1 127 0 3885 166 37 4 chr13 92433135 92434255 -9438914 + L1MA4 LINE L1 4795 5952 -348 1849 173 34 28 chr13 92434255 92434607 -9438562 - THE1B LTR MaLR 0 364 11 1567 188 20 14 chr13 92434612 92434957 -9438212 + L1MA4 LINE L1 5948 6294 -6 22 35 0 0 chr13 92434981 92435010 -9438159 + AT_rich Low_complexity Low_complexity 1 29 0 213 346 13 0 chr13 92436913 92436991 -9436178 + L2 LINE L2 3186 3264 -8 1440 201 57 23 chr13 92437798 92438151 -9435018 - MLT1A1 LTR MaLR 0 365 1 465 258 138 6 chr13 92439447 92439606 -9433563 + MIR SINE MIR 41 220 -42 205 328 0 0 chr13 92439944 92440008 -9433161 + L2 LINE L2 3201 3264 -8 251 174 14 29 chr13 92441476 92441545 -9431624 + (AATTG)n Simple_repeat Simple_repeat 3 70 0 194 350 108 8 chr13 92442175 92442295 -9430874 - MIR SINE MIR -33 229 98 216 280 34 127 chr13 92442731 92442849 -9430320 + L2 LINE L2 3205 3311 -2 23 54 0 0 chr13 92444822 92444859 -9428310 + AT_rich Low_complexity Low_complexity 1 37 0 783 260 18 24 chr13 92445489 92445938 -9427231 - MLT1D LTR MaLR -2 503 1 203 186 23 0 chr13 92447162 92447205 -9425964 + L2 LINE L2 3261 3304 -9 449 303 7 7 chr13 92450682 92450827 -9422342 - MLT1I LTR MaLR 0 409 265 289 225 54 47 chr13 92451094 92451223 -9421946 - MER97b DNA MER1_type? -1 1052 923 2317 236 59 64 chr13 92451442 92451644 -9421525 - MER97b DNA MER1_type? -195 858 657 2605 90 29 0 chr13 92451644 92452021 -9421148 + L1PA8 LINE L1 5783 6170 -2 2317 236 59 64 chr13 92452021 92452680 -9420489 - MER97b DNA MER1_type? -396 657 1 248 303 76 92 chr13 92453040 92453291 -9419878 - L2 LINE L2 -93 3179 2933 299 346 91 38 chr13 92453345 92453608 -9419561 - L2 LINE L2 -439 2875 2599 204 159 23 0 chr13 92453653 92453697 -9419472 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 250 323 49 43 chr13 92453723 92453887 -9419282 - L2 LINE L2 -923 2391 2227 29 0 0 0 chr13 92454444 92454473 -9418696 + AT_rich Low_complexity Low_complexity 1 29 0 33 56 0 0 chr13 92454503 92454557 -9418612 + AT_rich Low_complexity Low_complexity 1 54 0 1561 192 17 7 chr13 92455839 92456166 -9417003 + AluJb SINE Alu 13 312 0 732 281 36 27 chr13 92456508 92456729 -9416440 + MER58A DNA MER1_type 1 223 -1 31 68 0 0 chr13 92457545 92457604 -9415565 + AT_rich Low_complexity Low_complexity 1 59 0 199 241 52 17 chr13 92457851 92457909 -9415260 + L2 LINE L2 3248 3307 -6 2010 130 17 10 chr13 92458274 92458574 -9414595 + AluSg SINE Alu 1 302 -8 412 229 0 38 chr13 92459358 92459463 -9413706 - MER5A DNA MER1_type -85 104 4 1890 115 0 0 chr13 92460119 92460372 -9412797 + AluSq SINE Alu 1 253 -60 2059 191 43 75 chr13 92460667 92461201 -9411968 + Tigger1 DNA MER2_type 2 518 -1900 * 9155 147 37 1 chr13 92461199 92462725 -9410444 + Tigger1 DNA MER2_type 838 2418 0 2164 140 14 6 chr13 92462836 92463185 -9409984 + THE1A LTR MaLR 4 355 0 333 0 0 0 chr13 92463305 92463342 -9409827 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr13 92463405 92463426 -9409743 + AT_rich Low_complexity Low_complexity 1 21 0 237 294 50 67 chr13 92466157 92466276 -9406893 + L2 LINE L2 3151 3267 -5 252 186 0 0 chr13 92467266 92467325 -9405844 + A-rich Low_complexity Low_complexity 1 59 0 252 0 0 0 chr13 92468686 92468714 -9404455 + (CA)n Simple_repeat Simple_repeat 2 29 0 255 61 0 0 chr13 92470147 92470180 -9402989 + (T)n Simple_repeat Simple_repeat 1 33 0 414 281 50 31 chr13 92470550 92470710 -9402459 + MIR SINE MIR 100 262 0 286 156 50 50 chr13 92470832 92470973 -9402196 + (TATAA)n Simple_repeat Simple_repeat 3 143 0 356 140 43 0 chr13 92470975 92471068 -9402101 + (TA)n Simple_repeat Simple_repeat 1 97 0 216 317 117 8 chr13 92472045 92472165 -9401004 - MIR SINE MIR -3 259 127 306 50 0 0 chr13 92472301 92472341 -9400828 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1705 34 0 0 chr13 92472341 92472545 -9400624 - L1PA4 LINE L1 -24 6131 5928 588 63 7 0 chr13 92472541 92472625 -9400544 + L1P1 LINE L1 5741 5828 -293 * 456 314 66 22 chr13 92472647 92472873 -9400296 - MIR SINE MIR -17 245 10 24 32 0 0 chr13 92474138 92474169 -9399000 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr13 92474222 92474251 -9398918 + AT_rich Low_complexity Low_complexity 1 29 0 5279 179 40 17 chr13 92474858 92474933 -9398236 + L1MA8 LINE L1 4094 4166 -2125 1957 128 0 3 chr13 92474933 92475215 -9397954 + AluSc SINE Alu 1 281 -28 5279 179 40 17 chr13 92475215 92476004 -9397165 + L1MA8 LINE L1 4166 4935 -1356 2331 102 3 9 chr13 92476004 92476319 -9396850 + AluSq SINE Alu 1 313 0 5279 179 40 17 chr13 92476319 92477591 -9395578 + L1MA8 LINE L1 4935 6288 -3 2759 186 63 32 chr13 92477635 92478297 -9394872 + L1MB8 LINE L1 5490 6172 -6 24 32 0 0 chr13 92479868 92479899 -9393270 + AT_rich Low_complexity Low_complexity 1 31 0 266 296 53 8 chr13 92479962 92480094 -9393075 + L1ME LINE L1 5543 5680 -441 261 349 66 20 chr13 92480764 92480916 -9392253 + MLT1J LTR MaLR 246 404 -107 22 0 0 0 chr13 92482279 92482301 -9390868 + AT_rich Low_complexity Low_complexity 1 22 0 1357 166 146 4 chr13 92482301 92482437 -9390732 - AluJb SINE Alu -13 289 174 180 77 0 0 chr13 92482437 92482463 -9390706 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1357 166 146 4 chr13 92482463 92482579 -9390590 - AluJb SINE Alu -128 174 1 907 286 105 48 chr13 92482930 92483426 -9389743 - L3 LINE CR1 -174 1403 880 23 0 0 0 chr13 92484003 92484026 -9389143 + AT_rich Low_complexity Low_complexity 1 23 0 1894 149 174 14 chr13 92484387 92484755 -9388414 - MSTA LTR MaLR 0 428 2 6568 52 137 19 chr13 92486241 92486596 -9386573 - L1P LINE L1 -5090 1056 744 2615 30 3 0 chr13 92486596 92486896 -9386273 - AluY SINE Alu -10 301 1 6568 52 137 19 chr13 92486896 92487482 -9385687 - L1P LINE L1 -5402 744 4 30679 31 3 0 chr13 92487482 92492576 -9380593 + L1PA3 LINE L1 1049 6154 -1 24 67 0 0 chr13 92492671 92492716 -9380453 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 92493954 92493975 -9379194 + AT_rich Low_complexity Low_complexity 1 21 0 340 366 6 37 chr13 92494060 92494224 -9378945 - MER5B DNA MER1_type -16 162 4 384 312 58 32 chr13 92496334 92496523 -9376646 + ERVL LTR ERVL 1772 1965 -3799 1589 251 43 0 chr13 92496702 92496757 -9376412 + MER97a DNA MER1_type? 184 235 -659 408 97 0 0 chr13 92496757 92496819 -9376350 + (TA)n Simple_repeat Simple_repeat 1 62 0 1589 251 43 0 chr13 92496819 92497154 -9376015 + MER97a DNA MER1_type? 235 591 -303 4319 199 56 2 chr13 92497486 92498361 -9374808 - ERVL LTR ERVL -1007 4757 3836 2790 185 26 4 chr13 92499256 92499754 -9373415 + Tigger7 DNA MER2_type 2 510 -223 547 144 19 48 chr13 92499746 92499850 -9373319 + Tigger7 DNA MER2_type 2387 2487 0 * 313 272 0 22 chr13 92499868 92499960 -9373209 - L1MC4 LINE L1 -1339 6703 6614 184 30 61 0 chr13 92500121 92500154 -9373015 + (TTG)n Simple_repeat Simple_repeat 2 36 0 301 286 92 0 chr13 92500296 92500415 -9372754 + MER94 DNA DNA 5 134 0 431 274 57 16 chr13 92500758 92500882 -9372287 - MIR SINE MIR -121 141 13 226 244 158 12 chr13 92500950 92501032 -9372137 + LTR67 LTR ERVL 460 553 -4 2014 128 0 7 chr13 92501147 92501443 -9371726 + AluSc SINE Alu 3 296 -13 328 362 112 4 chr13 92501980 92502212 -9370957 - MIR SINE MIR -1 261 5 402 327 55 27 chr13 92502429 92502649 -9370520 - MIR SINE MIR -35 227 2 1570 117 25 172 chr13 92503560 92503788 -9369381 - THE1C LTR MaLR -2 373 238 1969 135 0 0 chr13 92503788 92504077 -9369092 + AluY SINE Alu 1 289 -22 1570 117 25 172 chr13 92504077 92504284 -9368885 - THE1C LTR MaLR -137 238 2 206 292 22 56 chr13 92504347 92504436 -9368733 - L2 LINE L2 -18 3254 3169 191 245 0 75 chr13 92504519 92504572 -9368597 - MER5A DNA MER1_type -124 65 17 30 27 0 0 chr13 92505526 92505563 -9367606 + AT_rich Low_complexity Low_complexity 1 37 0 4354 192 44 12 chr13 92505677 92506663 -9366506 - L1MA8 LINE L1 -3 6288 5272 26 0 0 0 chr13 92507798 92507824 -9365345 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr13 92508209 92508231 -9364938 + AT_rich Low_complexity Low_complexity 1 22 0 198 171 0 0 chr13 92508773 92508814 -9364355 + GA-rich Low_complexity Low_complexity 3 43 0 23 78 0 0 chr13 92509463 92509514 -9363655 + AT_rich Low_complexity Low_complexity 1 51 0 29 60 0 0 chr13 92509670 92509720 -9363449 + AT_rich Low_complexity Low_complexity 1 50 0 369 311 141 10 chr13 92509843 92510049 -9363120 + MIR SINE MIR 30 262 0 30 0 0 0 chr13 92510141 92510171 -9362998 + AT_rich Low_complexity Low_complexity 1 30 0 30 77 0 0 chr13 92510741 92510806 -9362363 + AT_rich Low_complexity Low_complexity 1 65 0 27 29 0 0 chr13 92512222 92512256 -9360913 + AT_rich Low_complexity Low_complexity 1 34 0 4118 36 0 2 chr13 92512517 92513016 -9360153 - L1PA3 LINE L1 -1 6154 5657 22 0 0 0 chr13 92513250 92513272 -9359897 + AT_rich Low_complexity Low_complexity 1 22 0 4171 229 74 51 chr13 92514327 92514434 -9358735 + Charlie1a DNA MER1_type 1 104 -2657 1968 92 3 31 chr13 92514434 92514727 -9358442 + AluY SINE Alu 15 299 -12 4171 229 74 51 chr13 92514727 92515587 -9357582 + Charlie1a DNA MER1_type 104 1014 -1747 212 0 36 0 chr13 92515587 92515615 -9357554 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 4171 229 74 51 chr13 92515615 92516068 -9357101 + Charlie1a DNA MER1_type 1014 1455 0 256 344 11 0 chr13 92516087 92516177 -9356992 + L2 LINE L2 3223 3313 0 3261 186 62 33 chr13 92516310 92516792 -9356377 - L1MB7 LINE L1 -9 6175 5709 1847 162 39 41 chr13 92516792 92517156 -9356013 + THE1B LTR MaLR 2 364 0 3261 186 62 33 chr13 92517156 92517903 -9355266 - L1MB7 LINE L1 -475 5709 4915 195 42 0 0 chr13 92517984 92518008 -9355161 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 252 318 69 23 chr13 92518208 92518381 -9354788 + ERVL LTR ERVL 3020 3200 -2564 261 260 39 109 chr13 92518762 92518905 -9354264 - MIR SINE MIR -72 136 1 25 0 0 0 chr13 92519280 92519305 -9353864 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr13 92519375 92519411 -9353758 + AT_rich Low_complexity Low_complexity 1 36 0 304 230 141 22 chr13 92521253 92521388 -9351781 - L1ME3 LINE L1 -94 6068 5918 229 244 0 0 chr13 92522023 92522068 -9351101 + (TA)n Simple_repeat Simple_repeat 2 46 0 2776 98 12 0 chr13 92523240 92523639 -9349530 - L1PA10 LINE L1 -487 5681 5278 3352 96 19 0 chr13 92523639 92524107 -9349062 + L1PA10 LINE L1 5678 6157 -11 196 283 0 19 chr13 92524335 92524388 -9348781 - L2 LINE L2 -213 3059 3008 4865 174 46 17 chr13 92525726 92527223 -9345946 + L1PB3 LINE L1 4256 5812 -342 2142 121 0 13 chr13 92527223 92527537 -9345632 + AluSg SINE Alu 1 310 0 4865 174 46 17 chr13 92527537 92527891 -9345278 + L1PB3 LINE L1 5812 6154 0 22 35 0 0 chr13 92527891 92527920 -9345249 + AT_rich Low_complexity Low_complexity 1 29 0 391 321 36 7 chr13 92528453 92528590 -9344579 + MIR SINE MIR 57 197 -65 2920 93 58 5 chr13 92528630 92528672 -9344497 - MLT2A2 LTR ERVL 0 453 415 387 0 0 0 chr13 92528672 92528715 -9344454 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 2920 93 58 5 chr13 92528715 92529102 -9344067 - MLT2A2 LTR ERVL -38 415 1 534 220 45 53 chr13 92530179 92530311 -9342858 - FLAM_C SINE Alu -12 131 1 261 119 0 0 chr13 92530316 92530358 -9342811 + (T)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr13 92530591 92530615 -9342554 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr13 92530976 92531005 -9342164 + (TC)n Simple_repeat Simple_repeat 2 30 0 27 0 0 0 chr13 92531029 92531056 -9342113 + AT_rich Low_complexity Low_complexity 1 27 0 215 219 0 0 chr13 92531564 92531605 -9341564 + (TATG)n Simple_repeat Simple_repeat 4 44 0 21 36 0 0 chr13 92531780 92531808 -9341361 + AT_rich Low_complexity Low_complexity 1 28 0 1612 177 25 0 chr13 92532122 92532404 -9340765 + AluSx SINE Alu 3 291 -21 225 94 0 0 chr13 92532488 92532520 -9340649 + (TG)n Simple_repeat Simple_repeat 1 32 0 204 309 208 11 chr13 92532637 92532815 -9340354 + MIR SINE MIR 42 254 -8 225 83 0 0 chr13 92533333 92533369 -9339800 + (A)n Simple_repeat Simple_repeat 1 36 0 23 54 0 0 chr13 92533465 92533502 -9339667 + AT_rich Low_complexity Low_complexity 1 37 0 2218 69 3 20 chr13 92534307 92534611 -9338558 - AluSc SINE Alu -10 299 1 24 67 0 0 chr13 92534772 92534817 -9338352 + AT_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr13 92534997 92535038 -9338131 + AT_rich Low_complexity Low_complexity 1 41 0 1792 136 0 18 chr13 92535109 92535382 -9337787 - AluSx SINE Alu -44 268 1 24 67 0 0 chr13 92537950 92537995 -9335174 + AT_rich Low_complexity Low_complexity 1 45 0 1406 239 7 4 chr13 92538060 92538340 -9334829 - AluJo SINE Alu -19 283 3 21 0 0 0 chr13 92538342 92538363 -9334806 + AT_rich Low_complexity Low_complexity 1 21 0 188 339 77 0 chr13 92539389 92539454 -9333715 - MIR SINE MIR -88 120 51 28 0 0 0 chr13 92539576 92539604 -9333565 + AT_rich Low_complexity Low_complexity 1 28 0 2150 119 3 16 chr13 92540426 92540736 -9332433 + AluSg SINE Alu 1 306 -4 200 59 29 0 chr13 92541843 92541877 -9331292 + (CA)n Simple_repeat Simple_repeat 1 35 0 295 388 27 7 chr13 92542379 92542526 -9330643 - L2 LINE L2 -229 3043 2894 470 242 65 16 chr13 92542716 92542840 -9330329 + MER5A DNA MER1_type 37 166 -23 198 0 0 0 chr13 92543123 92543145 -9330024 + (TG)n Simple_repeat Simple_repeat 2 23 0 270 0 0 0 chr13 92543585 92543615 -9329554 + (CA)n Simple_repeat Simple_repeat 2 31 0 1060 154 74 6 chr13 92543815 92543990 -9329179 + AluJb SINE Alu 99 285 -27 24 32 0 0 chr13 92544106 92544137 -9329032 + AT_rich Low_complexity Low_complexity 1 31 0 246 180 0 40 chr13 92544577 92544627 -9328542 + (TAG)n Simple_repeat Simple_repeat 2 49 0 241 317 113 22 chr13 92544640 92544870 -9328299 + L1 LINE L1 4783 5033 -1113 1907 156 0 0 chr13 92547964 92548269 -9324900 + AluSx SINE Alu 13 312 0 258 252 89 32 chr13 92548463 92548586 -9324583 + MARNA DNA Mariner 400 529 -57 2367 63 0 10 chr13 92549227 92549528 -9323641 - AluY SINE Alu -13 298 1 724 271 16 0 chr13 92550874 92551066 -9322103 - MER77 LTR ERV1 0 605 411 1959 97 30 0 chr13 92551400 92551669 -9321500 - AluY SINE Alu -24 287 11 225 204 0 0 chr13 92551783 92551827 -9321342 + A-rich Low_complexity Low_complexity 1 44 0 433 285 168 36 chr13 92552456 92552873 -9320296 - Charlie7 DNA MER1_type -257 2355 1884 274 338 44 15 chr13 92553058 92553194 -9319975 - MIR SINE MIR 0 262 123 293 292 53 9 chr13 92553477 92553590 -9319579 - L2 LINE L2 -9 3304 3187 872 288 58 6 chr13 92553605 92553932 -9319237 - Charlie7 DNA MER1_type -1522 1090 747 1405 189 54 9 chr13 92553967 92554284 -9318885 - L1MC3 LINE L1 -580 7205 6875 2362 97 0 0 chr13 92555827 92556126 -9317043 - AluSq SINE Alu -9 304 6 201 74 0 0 chr13 92557785 92557812 -9315357 + (T)n Simple_repeat Simple_repeat 1 27 0 3429 208 20 4 chr13 92558201 92558959 -9314210 - L1 LINE L1 -964 5182 4413 2350 76 3 3 chr13 92558960 92559262 -9313907 - AluY SINE Alu -9 302 1 207 0 0 0 chr13 92559264 92559287 -9313882 + (TTTG)n Simple_repeat Simple_repeat 3 25 0 5556 133 17 61 chr13 92559311 92559411 -9313758 + L1MA4A LINE L1 5200 5303 -1000 293 0 27 0 chr13 92559411 92559448 -9313721 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 5556 133 17 61 chr13 92559448 92560229 -9312940 + L1MA4A LINE L1 5303 6047 -256 2120 124 10 10 chr13 92560229 92560536 -9312633 - AluSq SINE Alu -6 307 1 5556 133 17 61 chr13 92560536 92560779 -9312390 + L1MA4A LINE L1 6047 6299 -4 2115 116 23 7 chr13 92560809 92561112 -9312057 + AluY SINE Alu 1 308 -3 2223 96 33 3 chr13 92561276 92561578 -9311591 - AluSq SINE Alu 0 313 3 314 267 16 105 chr13 92562972 92563163 -9310006 + L2 LINE L2 3118 3291 -22 190 207 172 17 chr13 92563893 92563951 -9309218 + MIR SINE MIR 81 147 -115 258 32 0 0 chr13 92567314 92567345 -9305824 + (CA)n Simple_repeat Simple_repeat 2 32 0 269 388 25 0 chr13 92568241 92568362 -9304807 - MER5B DNA MER1_type -7 171 48 271 250 15 29 chr13 92568401 92568469 -9304700 + L2 LINE L2 3206 3272 0 487 314 37 21 chr13 92568551 92568742 -9304427 + L2 LINE L2 3120 3313 0 819 181 101 16 chr13 92568987 92569175 -9303994 + MER3 DNA MER1_type 6 209 0 594 274 227 38 chr13 92570350 92570825 -9302344 - MLT1G LTR MaLR 0 590 26 284 327 123 18 chr13 92571002 92571222 -9301947 + MIR SINE MIR 20 262 0 567 133 177 0 chr13 92571815 92571928 -9301241 - FLAM_C SINE Alu 0 133 1 1558 225 58 44 chr13 92572061 92572559 -9300610 - MLT1D LTR MaLR 0 505 1 2064 117 0 46 chr13 92574825 92575010 -9298159 - AluSx SINE Alu -1 311 146 2345 81 13 0 chr13 92575010 92575317 -9297852 - AluY SINE Alu 0 311 1 2064 117 0 46 chr13 92575317 92575457 -9297712 - AluSx SINE Alu -166 146 1 406 192 78 3 chr13 92575817 92575928 -9297241 - LTR37A LTR ERV1 -24 444 285 303 261 77 8 chr13 92575979 92576109 -9297060 - LTR37A LTR ERV1 -242 184 46 200 372 97 35 chr13 92577124 92577269 -9295900 - MER5A DNA MER1_type 0 189 36 255 31 0 0 chr13 92577386 92577418 -9295751 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr13 92577694 92577715 -9295454 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr13 92578364 92578400 -9294769 + AT_rich Low_complexity Low_complexity 1 36 0 204 158 0 0 chr13 92578577 92578615 -9294554 + (TG)n Simple_repeat Simple_repeat 2 39 0 216 393 52 0 chr13 92579276 92579411 -9293758 - MIR3 SINE MIR -65 143 2 21 0 0 0 chr13 92580732 92580753 -9292416 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 92580839 92580860 -9292309 + AT_rich Low_complexity Low_complexity 1 21 0 1335 225 19 0 chr13 92581679 92581946 -9291223 + AluJb SINE Alu 3 274 -38 24 0 0 0 chr13 92582937 92582961 -9290208 + AT_rich Low_complexity Low_complexity 1 24 0 216 297 88 0 chr13 92583001 92583092 -9290077 + L2 LINE L2 3187 3285 -28 281 314 12 12 chr13 92583221 92583307 -9289862 - L2 LINE L2 0 3272 3187 1676 207 100 26 chr13 92583593 92584023 -9289146 - MLT1C LTR MaLR 0 467 6 1920 181 139 38 chr13 92584673 92584708 -9288461 - MLT2B3 LTR ERVL 0 554 524 601 64 32 0 chr13 92584708 92584802 -9288367 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 1920 181 139 38 chr13 92584802 92585269 -9287900 - MLT2B3 LTR ERVL -30 524 1 275 303 96 37 chr13 92585487 92585675 -9287494 - MIR SINE MIR -63 199 1 320 318 209 49 chr13 92585679 92586111 -9287058 + L2 LINE L2 1297 1659 -1655 2367 106 51 11 chr13 92586111 92586461 -9286708 - THE1B LTR MaLR 0 364 1 320 318 209 49 chr13 92586461 92586717 -9286452 + L2 LINE L2 1659 2095 -1219 2137 124 7 0 chr13 92586737 92587036 -9286133 - AluSg SINE Alu -9 301 1 461 256 51 40 chr13 92587081 92587274 -9285895 - L1MA10 LINE L1 0 6334 5985 * 2467 252 86 41 chr13 92587270 92589120 -9284049 - L1MD2 LINE L1 -346 6082 4134 294 267 8 53 chr13 92589163 92589294 -9283875 - L1MD2 LINE L1 -6231 165 41 610 337 79 12 chr13 92589374 92589703 -9283466 + L2 LINE L2 2188 2538 -776 1425 244 70 29 chr13 92589765 92590207 -9282962 + MLT1C LTR MaLR 1 460 -7 303 353 142 22 chr13 92590211 92590571 -9282598 + L2 LINE L2 2575 2977 -337 2105 120 0 3 chr13 92590836 92591150 -9282019 - AluSq SINE Alu 0 313 1 192 77 0 0 chr13 92591808 92591834 -9281335 + (A)n Simple_repeat Simple_repeat 1 26 0 299 342 39 61 chr13 92593159 92593390 -9279779 - L2 LINE L2 -31 3241 3016 578 278 25 6 chr13 92593453 92593615 -9279554 + MIR SINE MIR 3 167 -95 1157 255 75 67 chr13 92593933 92594412 -9278757 + MLT1E LTR MaLR 1 483 -110 44 46 0 0 chr13 92594431 92594496 -9278673 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr13 92595086 92595107 -9278062 + AT_rich Low_complexity Low_complexity 1 21 0 213 60 40 80 chr13 92595970 92596020 -9277149 + (TTTTTG)n Simple_repeat Simple_repeat 5 52 0 210 288 25 25 chr13 92596630 92596748 -9276421 + (TATATG)n Simple_repeat Simple_repeat 2 119 0 22 56 0 0 chr13 92597203 92597239 -9275930 + AT_rich Low_complexity Low_complexity 1 36 0 1789 147 0 4 chr13 92597354 92597626 -9275543 + AluSx SINE Alu 3 273 -39 207 0 0 0 chr13 92597631 92597654 -9275515 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 243 88 0 0 chr13 92597653 92597687 -9275482 + (TA)n Simple_repeat Simple_repeat 1 34 0 215 331 106 12 chr13 92598453 92598613 -9274556 + MIR SINE MIR 80 254 -8 21 0 0 0 chr13 92598725 92598746 -9274423 + AT_rich Low_complexity Low_complexity 1 21 0 411 21 0 0 chr13 92599992 92600040 -9273129 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 25 31 0 0 chr13 92603003 92603035 -9270134 + AT_rich Low_complexity Low_complexity 1 32 0 28 71 0 0 chr13 92605015 92605071 -9268098 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr13 92606795 92606825 -9266344 + AT_rich Low_complexity Low_complexity 1 30 0 626 258 67 34 chr13 92607571 92607780 -9265389 - MIR SINE MIR -2 260 45 649 219 8 0 chr13 92607815 92607943 -9265226 + MER5A DNA MER1_type 1 129 -60 1750 75 50 0 chr13 92609407 92609648 -9263521 - MLT2A2 LTR ERVL 0 453 201 2705 129 21 0 chr13 92609649 92610069 -9263100 - MER57B LTR ERV1 0 434 6 1178 118 41 5 chr13 92610074 92610269 -9262900 - MLT2A2 LTR ERVL -250 203 2 22 0 0 0 chr13 92610273 92610295 -9262874 + AT_rich Low_complexity Low_complexity 1 22 0 528 257 22 7 chr13 92610494 92610630 -9262539 + MER5B DNA MER1_type 1 138 -40 506 230 182 0 chr13 92610720 92610868 -9262301 - MER5A DNA MER1_type 0 189 15 278 339 21 11 chr13 92611539 92611658 -9261511 + MIR SINE MIR 32 154 -61 696 167 8 16 chr13 92612549 92612675 -9260494 - L1MB1 LINE L1 -237 5952 5828 834 202 16 26 chr13 92612675 92612850 -9260319 + L1MB1 LINE L1 5975 6165 -3 292 292 94 41 chr13 92613469 92613640 -9259529 + LTR67 LTR ERVL 367 546 -11 185 111 83 0 chr13 92613853 92613889 -9259280 + MIR SINE MIR 213 251 -11 35 0 0 0 chr13 92615490 92615525 -9257644 + AT_rich Low_complexity Low_complexity 1 35 0 1953 97 54 37 chr13 92616805 92617103 -9256066 - AluSx SINE Alu -7 305 3 2304 107 3 0 chr13 92619338 92619647 -9253522 - AluSq SINE Alu -3 310 1 1244 191 122 43 chr13 92619876 92620221 -9252948 + MLT1C LTR MaLR 42 413 -54 201 39 0 0 chr13 92620762 92620788 -9252381 + (GA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr13 92621538 92621561 -9251608 + AT_rich Low_complexity Low_complexity 1 23 0 309 311 68 8 chr13 92622128 92622260 -9250909 - L2 LINE L2 -508 2806 2667 1134 149 11 0 chr13 92622268 92622430 -9250739 - MER4B LTR ERV1 0 610 447 1966 121 112 0 chr13 92622430 92622743 -9250426 - THE1C LTR MaLR 0 375 28 309 268 151 4 chr13 92622751 92623016 -9250153 - L1MEc LINE L1 -3037 3092 2789 412 74 88 7 chr13 92623155 92623303 -9249866 + (TA)n Simple_repeat Simple_repeat 1 160 0 424 143 0 153 chr13 92623356 92623454 -9249715 + MSTB LTR MaLR 3 85 -341 2942 84 51 0 chr13 92623454 92623883 -9249286 + L1PB1 LINE L1 5341 5791 -360 604 113 11 48 chr13 92623883 92624069 -9249100 + (TA)n Simple_repeat Simple_repeat 2 180 0 2549 87 3 11 chr13 92624080 92624436 -9248733 + L1PB1 LINE L1 5799 6151 0 3200 156 16 16 chr13 92624492 92625037 -9248132 - MER4D LTR ERV1 -327 545 1 354 293 208 19 chr13 92625074 92625286 -9247883 - L1MB1 LINE L1 -344 5777 5526 2700 19 0 6 chr13 92626030 92626342 -9246827 - AluY SINE Alu -1 310 1 315 306 36 51 chr13 92626362 92626695 -9246474 - L1MEc LINE L1 -4790 1520 1193 498 304 96 69 chr13 92626698 92627231 -9245938 - L1MEc LINE L1 -4974 1145 599 306 297 97 32 chr13 92627690 92627845 -9245324 - L1MEc LINE L1 -5949 170 6 2236 113 0 3 chr13 92629079 92629379 -9243790 - AluSx SINE Alu -13 299 1 284 226 11 75 chr13 92629722 92629815 -9243354 - MLT1J1 LTR MaLR -324 122 36 859 281 61 43 chr13 92630028 92630373 -9242796 - MLT1E2 LTR MaLR -275 351 1 318 306 0 0 chr13 92630470 92630555 -9242614 - MER94 DNA DNA 0 134 50 312 331 120 5 chr13 92632369 92632553 -9240616 - MIR SINE MIR 0 262 58 193 356 26 26 chr13 92632583 92632698 -9240471 - MIR SINE MIR -128 134 20 1138 302 18 36 chr13 92632917 92633304 -9239865 - MLT1H1 LTR MaLR -173 382 3 208 139 0 0 chr13 92633404 92633440 -9239729 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1304 239 83 46 chr13 92633481 92634196 -9238973 + L1ME2 LINE L1 4738 5478 -684 1433 252 42 59 chr13 92634238 92634711 -9238458 + LTR40c LTR ERVL 1 465 0 291 304 68 0 chr13 92634711 92634859 -9238310 + L1ME2 LINE L1 5556 5713 -453 349 229 73 99 chr13 92634861 92635053 -9238116 + L1ME2 LINE L1 5779 5965 -199 280 262 21 92 chr13 92635063 92635204 -9237965 - L2 LINE L2 -938 2376 2246 22 0 0 0 chr13 92635565 92635587 -9237582 + AT_rich Low_complexity Low_complexity 1 22 0 383 345 114 14 chr13 92635809 92636029 -9237140 - MLT1I LTR MaLR -14 395 154 236 373 152 31 chr13 92637151 92637757 -9235412 - L2 LINE L2 -556 2758 2080 244 246 16 107 chr13 92637912 92638034 -9235135 + MLT1L LTR MaLR 209 319 -296 660 240 88 6 chr13 92638635 92638806 -9234363 + MER58A DNA MER1_type 2 186 -38 2355 107 3 0 chr13 92638838 92639146 -9234023 - AluSg SINE Alu -1 309 1 2139 127 117 5 chr13 92639183 92639568 -9233601 + MSTA LTR MaLR 1 428 0 30 27 0 0 chr13 92639972 92640009 -9233160 + AT_rich Low_complexity Low_complexity 1 37 0 440 351 116 14 chr13 92640327 92640612 -9232557 + MLT1I LTR MaLR 42 355 -54 335 183 12 0 chr13 92641037 92641119 -9232050 + (TA)n Simple_repeat Simple_repeat 2 84 0 1823 150 4 0 chr13 92641119 92641399 -9231770 - AluSx SINE Alu -25 287 7 743 162 32 5 chr13 92641412 92641592 -9231577 - L1MA3 LINE L1 -102 6193 6032 310 110 0 137 chr13 92643257 92643330 -9229839 - L1PA10 LINE L1 0 6168 6106 378 121 0 0 chr13 92644046 92644112 -9229057 + (CA)n Simple_repeat Simple_repeat 1 66 0 224 397 43 7 chr13 92645104 92645245 -9227924 + MIR3 SINE MIR 54 199 -9 418 364 73 39 chr13 92645411 92645972 -9227197 + L2 LINE L2 2048 2627 -687 38 39 0 0 chr13 92648596 92648648 -9224521 + AT_rich Low_complexity Low_complexity 1 52 0 1373 136 45 133 chr13 92649133 92649464 -9223705 + AluJo SINE Alu 10 311 -1 1937 154 3 3 chr13 92650877 92651182 -9221987 - AluSx SINE Alu -7 305 1 28 0 0 0 chr13 92651742 92651770 -9221399 + AT_rich Low_complexity Low_complexity 1 28 0 901 192 0 0 chr13 92655639 92655790 -9217379 + FRAM SINE Alu 6 156 -20 23 0 0 0 chr13 92655790 92655813 -9217356 + AT_rich Low_complexity Low_complexity 1 23 0 330 263 0 0 chr13 92656207 92656287 -9216882 - L1MC4 LINE L1 -1 8041 7962 636 264 131 17 chr13 92656588 92656993 -9216176 - L1MC4 LINE L1 -217 7825 7375 286 253 0 22 chr13 92657931 92658022 -9215147 - HAL1 LINE L1 -916 1591 1503 571 269 66 22 chr13 92658033 92658260 -9214909 + L1MCc LINE L1 17 253 -6170 275 300 31 31 chr13 92658264 92658394 -9214775 + MLT1H LTR MaLR 108 237 -312 2891 130 7 0 chr13 92658454 92658885 -9214284 - MER57B LTR ERV1 0 434 1 239 208 42 14 chr13 92658888 92658960 -9214209 + MER116 DNA Mariner 7 80 0 2219 104 17 0 chr13 92659230 92659528 -9213641 - AluSc SINE Alu -6 303 1 1864 171 29 29 chr13 92660508 92660883 -9212286 + THE1C LTR MaLR 1 375 0 189 239 83 73 chr13 92661681 92661790 -9211379 - L2 LINE L2 -2473 841 732 466 302 68 44 chr13 92662678 92662883 -9210286 + MIR SINE MIR 13 222 -40 2107 173 16 56 chr13 92663027 92663477 -9209692 - Tigger2a DNA MER2_type 0 434 3 1373 242 46 12 chr13 92664414 92664740 -9208429 - MLT1A2 LTR MaLR -37 337 1 800 193 17 33 chr13 92665299 92665480 -9207689 - FRAM SINE Alu -2 174 1 22 35 0 0 chr13 92665571 92665600 -9207569 + AT_rich Low_complexity Low_complexity 1 29 0 514 292 52 56 chr13 92666761 92666806 -9206363 - MIR SINE MIR -4 258 214 2259 103 3 3 chr13 92666806 92667118 -9206051 - AluSq SINE Alu -1 312 1 514 292 52 56 chr13 92667118 92667322 -9205847 - MIR SINE MIR -48 214 10 585 313 39 0 chr13 92667323 92667505 -9205664 - MER5A DNA MER1_type 0 189 1 437 230 84 61 chr13 92668711 92668927 -9204242 + L1ME3 LINE L1 5930 6161 -9 195 170 0 0 chr13 92669969 92670016 -9203153 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1049 305 65 21 chr13 92671626 92672091 -9201078 - L2 LINE L2 0 3313 2829 557 328 223 15 chr13 92672102 92672560 -9200609 + L2 LINE L2 2412 2964 -350 2339 50 0 0 chr13 92673242 92673520 -9199649 + AluY SINE Alu 1 278 -33 218 32 32 0 chr13 92673527 92673558 -9199611 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr13 92674021 92674045 -9199124 + (TAA)n Simple_repeat Simple_repeat 2 25 0 222 336 19 56 chr13 92675359 92675466 -9197703 + L2 LINE L2 3186 3288 -25 21 0 0 0 chr13 92676650 92676671 -9196498 + AT_rich Low_complexity Low_complexity 1 21 0 444 258 13 52 chr13 92676887 92677042 -9196127 - MLT1F LTR MaLR -7 535 387 25 65 0 0 chr13 92677047 92677093 -9196076 + AT_rich Low_complexity Low_complexity 1 46 0 225 241 17 35 chr13 92678076 92678134 -9195035 - L2 LINE L2 0 3272 3216 244 160 0 0 chr13 92678158 92678208 -9194961 - L1MC4 LINE L1 -1334 6708 6659 2484 132 11 0 chr13 92678278 92678649 -9194520 + THE1C LTR MaLR 1 375 0 9364 126 37 42 chr13 92678649 92680236 -9192933 + THE1C-int LTR MaLR 1 1580 0 2627 104 8 8 chr13 92680236 92680611 -9192558 + THE1C LTR MaLR 1 375 0 1476 224 30 25 chr13 92681427 92681789 -9191380 - MLT1A1 LTR MaLR -1 364 1 2747 226 16 74 chr13 92681789 92682485 -9190684 - MLT1A1-int LTR MaLR 0 1735 1039 2694 255 22 18 chr13 92682560 92683239 -9189930 - MLT1A1-int LTR MaLR -907 828 147 23 0 0 0 chr13 92683341 92683364 -9189805 + AT_rich Low_complexity Low_complexity 1 23 0 266 212 81 71 chr13 92683877 92683976 -9189193 - MIR SINE MIR -81 181 82 733 228 36 36 chr13 92684455 92684648 -9188521 + MER63A DNA MER1_type 12 204 -6 536 281 85 67 chr13 92684814 92685309 -9187860 + MLT1H1 LTR MaLR 1 517 -38 205 152 0 0 chr13 92687084 92687117 -9186052 + A-rich Low_complexity Low_complexity 3 35 0 199 290 161 0 chr13 92688479 92688541 -9184628 - L2 LINE L2 -32 3281 3210 2167 107 0 7 chr13 92688541 92688868 -9184301 + AluSx SINE Alu 1 325 0 2174 57 0 0 chr13 92688878 92689140 -9184029 + AluY SINE Alu 37 298 -13 348 341 54 18 chr13 92689489 92689712 -9183457 + MIR SINE MIR 21 251 -11 2113 231 42 19 chr13 92689995 92690524 -9182645 - MER87 LTR ERV1 0 541 1 381 255 42 57 chr13 92690690 92690902 -9182267 + MLT1K LTR MaLR 374 582 -6 2221 64 0 0 chr13 92690962 92691243 -9181926 + L1PA7 LINE L1 5856 6158 0 199 0 0 0 chr13 92691243 92691265 -9181904 + (TAA)n Simple_repeat Simple_repeat 3 180 0 1844 156 10 0 chr13 92691494 92691795 -9181374 + AluSx SINE Alu 1 304 -8 27 29 0 0 chr13 92693442 92693476 -9179693 + AT_rich Low_complexity Low_complexity 1 34 0 2179 112 3 16 chr13 92694816 92695130 -9178039 + AluSg SINE Alu 1 310 0 2782 94 41 25 chr13 92696617 92696661 -9176508 - MLT2A1 LTR ERVL 0 444 402 471 35 0 0 chr13 92696661 92696718 -9176451 + (TA)n Simple_repeat Simple_repeat 1 57 0 2782 94 41 25 chr13 92696718 92697110 -9176059 - MLT2A1 LTR ERVL -42 402 1 494 239 23 8 chr13 92697151 92697281 -9175888 + ORSL DNA AcHobo 141 272 -3 376 312 72 51 chr13 92697310 92697602 -9175567 + L2 LINE L2 2179 2476 -838 834 207 129 27 chr13 92697979 92698235 -9174934 + MLT1B LTR MaLR 1 282 -108 412 226 52 9 chr13 92698243 92698358 -9174811 - ORSL DNA AcHobo -15 260 141 634 73 32 0 chr13 92698399 92698493 -9174676 + MLT2A2 LTR ERVL 1 79 -374 260 211 19 0 chr13 92698493 92698545 -9174624 - MIR SINE MIR -115 147 95 650 313 24 95 chr13 92700665 92700777 -9172392 - L2 LINE L2 -1 3312 3194 1621 89 58 0 chr13 92700777 92701001 -9172168 - AluSg SINE Alu -73 237 1 650 313 24 95 chr13 92701001 92701300 -9171869 - L2 LINE L2 -119 3194 2930 224 224 15 60 chr13 92701635 92701702 -9171467 - MIR SINE MIR -79 183 120 343 260 94 0 chr13 92701872 92701999 -9171170 + MLT1H1 LTR MaLR 136 274 -281 240 233 0 0 chr13 92702061 92702104 -9171065 + MLT1H1 LTR MaLR 237 279 -276 1046 266 29 7 chr13 92702261 92702569 -9170600 + MLT1H1 LTR MaLR 237 551 -4 24 0 0 0 chr13 92703165 92703189 -9169980 + AT_rich Low_complexity Low_complexity 1 24 0 198 256 0 115 chr13 92703491 92703569 -9169600 + L3b LINE CR1 1109 1177 -406 186 43 0 0 chr13 92703876 92703899 -9169270 + (CAAGG)n Simple_repeat Simple_repeat 4 26 0 2189 167 61 0 chr13 92705032 92705439 -9167730 - MSTB1 LTR MaLR 0 432 1 667 174 55 0 chr13 92705486 92705595 -9167574 + AluSp SINE Alu 3 117 -196 195 42 0 0 chr13 92705597 92705621 -9167548 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 22 56 0 0 chr13 92706148 92706184 -9166985 + AT_rich Low_complexity Low_complexity 1 36 0 1377 127 0 47 chr13 92706441 92706653 -9166516 + AluSg/x SINE Alu 87 288 -24 22 0 0 0 chr13 92706653 92706675 -9166494 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 92708139 92708161 -9165008 + AT_rich Low_complexity Low_complexity 1 22 0 187 239 30 30 chr13 92708313 92708380 -9164789 - L2 LINE L2 0 3272 3206 697 231 0 0 chr13 92708385 92708528 -9164641 - MLT1A1 LTR MaLR -2 363 221 1217 217 21 35 chr13 92708657 92708947 -9164222 - MLT1A1 LTR MaLR -2 363 78 328 349 25 25 chr13 92709476 92709714 -9163455 - L1MC4a LINE L1 -1897 5911 5674 544 291 127 54 chr13 92709967 92710619 -9162550 - L1MEd LINE L1 -4890 1229 530 24 32 0 0 chr13 92710926 92710957 -9162212 + AT_rich Low_complexity Low_complexity 1 31 0 249 316 88 26 chr13 92711361 92711475 -9161694 + L2 LINE L2 3184 3304 -9 465 106 43 11 chr13 92712146 92712240 -9160929 + GA-rich Low_complexity Low_complexity 4 100 0 345 353 45 30 chr13 92713756 92713957 -9159212 - L3 LINE CR1 -19 1558 1355 1394 153 32 2 chr13 92714953 92715297 -9157872 - MSTA LTR MaLR 0 428 1 1833 171 56 51 chr13 92716872 92717222 -9155947 + MLT2D LTR ERVL 1 355 -59 225 0 0 0 chr13 92717222 92717247 -9155922 + (TG)n Simple_repeat Simple_repeat 2 26 0 1833 171 56 51 chr13 92717247 92717306 -9155863 + MLT2D LTR ERVL 355 412 -2 343 306 86 54 chr13 92717310 92717532 -9155637 - MIR SINE MIR -27 235 7 212 172 52 0 chr13 92718094 92718152 -9155017 + (TA)n Simple_repeat Simple_repeat 1 61 0 195 129 0 0 chr13 92718405 92718436 -9154733 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr13 92718538 92718563 -9154606 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 319 0 22 chr13 92718598 92718689 -9154480 + (TG)n Simple_repeat Simple_repeat 2 90 0 26 0 0 0 chr13 92719201 92719227 -9153942 + AT_rich Low_complexity Low_complexity 1 26 0 252 268 16 24 chr13 92719245 92719368 -9153801 + L1MC4 LINE L1 7120 7241 -801 244 344 0 0 chr13 92719582 92719672 -9153497 + G-rich Low_complexity Low_complexity 1 90 0 271 263 86 20 chr13 92719937 92720135 -9153034 + L1MC4 LINE L1 7069 7279 -763 318 250 15 8 chr13 92720203 92720335 -9152834 + (CATATA)n Simple_repeat Simple_repeat 4 136 0 598 255 29 90 chr13 92720340 92720618 -9152551 + L1MC4 LINE L1 7326 7586 -456 212 246 31 0 chr13 92720856 92720921 -9152248 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 284 167 33 117 chr13 92720933 92721053 -9152116 + L1MC4 LINE L1 7928 8037 -5 252 0 0 0 chr13 92723018 92723046 -9150123 + (TG)n Simple_repeat Simple_repeat 1 28 0 2186 100 0 4 chr13 92723046 92723327 -9149842 - AluSq SINE Alu -33 280 1 200 95 71 0 chr13 92724181 92724223 -9148946 + (TA)n Simple_repeat Simple_repeat 2 46 0 236 111 22 0 chr13 92724259 92724304 -9148865 + (TA)n Simple_repeat Simple_repeat 2 47 0 1477 102 41 0 chr13 92724743 92724940 -9148229 + AluSg SINE Alu 64 268 -42 198 0 0 0 chr13 92724954 92724976 -9148193 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1069 232 109 47 chr13 92724990 92725413 -9147756 - LTR40b LTR ERVL -10 452 4 714 224 73 0 chr13 92725711 92725876 -9147293 + MER20 DNA MER1_type 42 218 -1 262 294 64 118 chr13 92726157 92726361 -9146808 + MIR SINE MIR 20 212 -50 21 0 0 0 chr13 92730351 92730372 -9142797 + AT_rich Low_complexity Low_complexity 1 21 0 435 272 37 78 chr13 92730505 92730748 -9142421 + L3b LINE CR1 1341 1573 -10 490 234 70 0 chr13 92730783 92730911 -9142258 + L3b LINE CR1 1263 1399 -184 360 0 0 0 chr13 92731913 92731953 -9141216 + (CA)n Simple_repeat Simple_repeat 1 40 0 280 335 176 0 chr13 92732230 92732526 -9140643 - MLT1L LTR MaLR -261 354 7 2008 149 7 0 chr13 92734414 92734723 -9138446 - AluSx SINE Alu -1 311 1 325 301 35 35 chr13 92735851 92736137 -9137032 + L1ME LINE L1 1280 1565 -5069 261 246 16 0 chr13 92736138 92736199 -9136970 + GA-rich Low_complexity Low_complexity 4 65 0 1955 105 8 0 chr13 92736201 92736459 -9136710 + AluSx SINE Alu 18 277 -35 234 0 0 0 chr13 92736467 92736493 -9136676 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 324 254 85 28 chr13 92736502 92736753 -9136416 + L1ME LINE L1 1478 1888 -4903 2438 57 0 41 chr13 92736840 92737156 -9136013 + AluY SINE Alu 1 303 -8 244 208 0 19 chr13 92737276 92737329 -9135840 + L1M1 LINE L1 2963 3014 -4551 1420 258 40 45 chr13 92737396 92738137 -9135032 + L1M1 LINE L1 3858 4595 -2970 205 330 11 11 chr13 92740572 92740660 -9132509 + (CATATA)n Simple_repeat Simple_repeat 3 90 0 1290 194 85 15 chr13 92740782 92741123 -9132046 + MLT1A1 LTR MaLR 1 365 0 530 229 66 42 chr13 92741248 92741414 -9131755 + MLT1I LTR MaLR 19 188 -221 368 226 8 0 chr13 92741552 92741676 -9131493 + (TGGA)n Simple_repeat Simple_repeat 4 128 0 22 0 0 0 chr13 92741690 92741712 -9131457 + AT_rich Low_complexity Low_complexity 1 22 0 297 267 252 0 chr13 92742009 92742144 -9131025 + MIR SINE MIR 84 252 -10 470 344 16 26 chr13 92743218 92743407 -9129762 - L3b LINE CR1 -275 1308 1122 571 269 121 6 chr13 92743529 92743711 -9129458 - MER63A DNA MER1_type -7 203 1 2003 186 78 0 chr13 92743829 92744226 -9128943 + MSTA LTR MaLR 1 428 0 27 62 0 0 chr13 92745129 92745177 -9127992 + AT_rich Low_complexity Low_complexity 1 48 0 1140 170 31 0 chr13 92745180 92745404 -9127765 - L1MA8 LINE L1 -29 6262 6032 241 323 50 31 chr13 92745422 92745583 -9127586 - HAL1 LINE L1 -1090 1417 1254 315 0 0 0 chr13 92745653 92745688 -9127481 + (TG)n Simple_repeat Simple_repeat 1 35 0 1734 226 68 7 chr13 92745918 92746360 -9126809 + MLT1D LTR MaLR 31 499 -6 2266 99 0 3 chr13 92747098 92747401 -9125768 - AluY SINE Alu -9 302 1 338 318 0 0 chr13 92747514 92747624 -9125545 + MER117 DNA MER1_type 55 164 -33 251 192 19 0 chr13 92749505 92749557 -9123612 - L1PA16 LINE L1 -9 6157 6105 194 91 30 0 chr13 92749702 92749735 -9123434 + CT-rich Low_complexity Low_complexity 4 37 0 181 360 47 0 chr13 92750228 92750314 -9122855 - MIR SINE MIR -77 131 42 308 270 9 36 chr13 92752246 92752357 -9120812 - MER94 DNA DNA -23 111 4 261 257 14 14 chr13 92752427 92752497 -9120672 - MER5A DNA MER1_type -11 178 109 3779 182 33 43 chr13 92752519 92753338 -9119831 + L1MB3 LINE L1 15 825 -5559 1466 162 47 5 chr13 92753334 92753657 -9119512 + L1MB3 LINE L1 1582 2013 -4371 * 4048 232 63 59 chr13 92753761 92755292 -9117877 + L1MB3 LINE L1 2985 4522 -1860 785 240 26 8 chr13 92755328 92755580 -9117589 + L1MB3 LINE L1 5012 5288 -1094 1884 161 48 23 chr13 92755583 92755980 -9117189 + L1MB3 LINE L1 6011 6417 -2 266 0 29 0 chr13 92756016 92756050 -9117119 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 465 324 71 13 chr13 92757634 92757859 -9115310 + MLT1I LTR MaLR 102 339 -70 362 293 179 49 chr13 92859151 92859675 -9013494 - L1MEd LINE L1 -867 1623 1057 330 80 0 0 chr13 92860399 92860449 -9012720 + (CA)n Simple_repeat Simple_repeat 2 51 0 185 333 80 80 chr13 92860472 92860634 -9012535 + L2 LINE L2 2996 3157 -115 36 40 0 0 chr13 92860948 92860998 -9012171 + AT_rich Low_complexity Low_complexity 1 50 0 480 88 0 0 chr13 92861111 92861179 -9011990 - AluY SINE Alu -13 299 232 1270 67 0 0 chr13 92861180 92861330 -9011839 - AluY SINE Alu -161 150 1 361 207 11 23 chr13 92861457 92861544 -9011625 + AluY SINE Alu 1 86 -215 1101 203 5 0 chr13 92861644 92861856 -9011313 + L1MC1 LINE L1 6103 6315 -18 27 81 0 0 chr13 92863839 92863901 -9009268 + AT_rich Low_complexity Low_complexity 1 62 0 1862 275 125 35 chr13 92864598 92865508 -9007661 + L2 LINE L2 1876 2867 -447 4893 132 1 4 chr13 92866666 92867402 -9005767 - HSMAR2 DNA Mariner -1 1301 568 317 70 0 0 chr13 92867505 92867548 -9005621 - HSMAR2 DNA Mariner -1258 44 2 218 254 32 16 chr13 92868017 92868080 -9005089 + MIR3 SINE MIR 113 176 -32 183 162 0 0 chr13 92870806 92870843 -9002326 + (CA)n Simple_repeat Simple_repeat 2 38 0 284 312 167 14 chr13 92871240 92871455 -9001714 - L3 LINE CR1 -623 954 707 207 374 0 20 chr13 92871469 92871568 -9001601 + MIR SINE MIR 47 143 -65 24 0 0 0 chr13 92871628 92871652 -9001517 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 92872306 92872334 -9000835 + AT_rich Low_complexity Low_complexity 1 28 0 299 326 43 14 chr13 92872470 92872608 -9000561 - MIR SINE MIR -100 162 21 910 233 41 37 chr13 92872864 92873185 -8999984 - L1MA9 LINE L1 0 6291 5983 5402 188 32 29 chr13 92873187 92875120 -8998049 - L1MA9 LINE L1 -268 6044 4103 313 95 0 0 chr13 92875716 92875758 -8997411 + AluSg/x SINE Alu 92 133 -167 5769 65 26 57 chr13 92876996 92877890 -8995279 + SVA Other Other 1 866 -520 6510 70 28 26 chr13 92877901 92878856 -8994313 + SVA Other Other 430 1386 0 201 39 0 0 chr13 92879514 92879540 -8993629 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3347 82 10 20 chr13 92879541 92880028 -8993141 + L1P5 LINE L1 5310 5791 -360 236 265 24 0 chr13 92880044 92880127 -8993042 - L1MC4 LINE L1 -1340 6702 6618 2179 148 30 0 chr13 92880305 92880678 -8992491 + L1PB1 LINE L1 5767 6150 -1 329 203 14 0 chr13 92881109 92881178 -8991991 + AluS SINE Alu 1 70 -232 1940 133 0 32 chr13 92881281 92881597 -8991572 + AluSq SINE Alu 3 308 -5 212 357 46 58 chr13 92883307 92883548 -8989621 + L2 LINE L2 2950 3187 -85 23 0 0 0 chr13 92883618 92883641 -8989528 + AT_rich Low_complexity Low_complexity 1 23 0 377 305 66 23 chr13 92884452 92884639 -8988530 - MIR SINE MIR -65 143 1 217 300 67 0 chr13 92885177 92885237 -8987932 - MIR SINE MIR -7 255 192 207 154 19 19 chr13 92886349 92886401 -8986768 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1687 130 0 34 chr13 92886718 92886980 -8986189 + AluSq SINE Alu 35 287 -26 825 287 65 52 chr13 92887741 92888489 -8984680 - HAL1 LINE L1 -705 1802 1045 208 237 92 69 chr13 92888995 92889126 -8984043 - MIR SINE MIR -55 207 74 210 71 0 0 chr13 92889469 92889497 -8983672 + (TA)n Simple_repeat Simple_repeat 1 28 0 215 281 85 37 chr13 92889659 92889741 -8983428 + L3b LINE CR1 1264 1349 -234 189 74 0 0 chr13 92889904 92889931 -8983238 + (GA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr13 92890554 92890575 -8982594 + AT_rich Low_complexity Low_complexity 1 21 0 2819 7 0 0 chr13 92890990 92891296 -8981873 - AluYa5 SINE Alu -5 306 1 401 325 0 0 chr13 92891555 92891678 -8981491 + LTR67 LTR ERVL 102 224 -333 568 244 28 51 chr13 92891723 92891940 -8981229 + LTR67 LTR ERVL 345 556 -1 22 0 0 0 chr13 92892563 92892585 -8980584 + AT_rich Low_complexity Low_complexity 1 22 0 1227 57 31 0 chr13 92892798 92892957 -8980212 - L1PA11 LINE L1 0 6174 6011 815 194 11 28 chr13 92894044 92894224 -8978945 + FRAM SINE Alu 1 176 0 308 148 16 0 chr13 92894227 92894288 -8978881 + A-rich Low_complexity Low_complexity 5 66 0 1479 150 61 35 chr13 92894485 92894798 -8978371 - THE1C LTR MaLR 0 375 55 374 160 0 13 chr13 92894805 92894880 -8978289 + (TA)n Simple_repeat Simple_repeat 1 74 0 274 294 0 0 chr13 92894881 92894966 -8978203 + L1MC4 LINE L1 6614 6698 -1344 201 211 0 0 chr13 92894971 92895023 -8978146 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1487 123 0 0 chr13 92895396 92895629 -8977540 - AluSg/x SINE Alu 0 314 82 4450 23 2 4 chr13 92896140 92896669 -8976500 + L1PA3 LINE L1 5627 6154 -1 188 319 0 21 chr13 92896728 92896775 -8976394 - L2 LINE L2 -93 3179 3134 184 349 35 23 chr13 92896969 92897055 -8976114 + L2 LINE L2 3159 3245 -27 200 354 79 16 chr13 92897150 92897277 -8975892 - MIR SINE MIR -98 164 30 1890 65 4 0 chr13 92897832 92898080 -8975089 - L1PA4 LINE L1 0 6155 5907 2977 138 74 25 chr13 92899379 92899706 -8973463 - MER41C LTR ERV1 0 554 190 2225 75 7 0 chr13 92899706 92899984 -8973185 + AluSc SINE Alu 16 295 -14 2977 138 74 25 chr13 92899984 92900184 -8972985 - MER41C LTR ERV1 -364 190 1 274 121 77 22 chr13 92900187 92900278 -8972891 + (TA)n Simple_repeat Simple_repeat 2 97 0 2160 50 0 4 chr13 92901513 92901771 -8971398 + AluY SINE Alu 1 257 -54 7743 23 0 0 chr13 92902097 92903045 -8970124 - L1PA2 LINE L1 0 6155 5208 183 320 79 39 chr13 92903344 92903522 -8969647 - MIR SINE MIR -15 247 63 644 295 8 42 chr13 92903547 92903784 -8969385 - MIR SINE MIR -12 250 22 23 0 0 0 chr13 92904841 92904864 -8968305 + AT_rich Low_complexity Low_complexity 1 23 0 183 258 21 10 chr13 92907204 92907301 -8965868 + (CATA)n Simple_repeat Simple_repeat 3 100 0 213 319 35 35 chr13 92907745 92907858 -8965311 - L2 LINE L2 -2 3311 3199 445 89 16 89 chr13 92908163 92908204 -8964965 + (GA)n Simple_repeat Simple_repeat 1 43 -71 185 0 0 39 chr13 92908204 92908230 -8964939 + (TG)n Simple_repeat Simple_repeat 1 25 0 445 89 16 89 chr13 92908230 92908311 -8964858 + (GA)n Simple_repeat Simple_repeat 43 114 0 308 304 96 32 chr13 92908647 92908772 -8964397 - L2 LINE L2 0 3313 3181 2784 7 0 0 chr13 92909102 92909402 -8963767 - AluY SINE Alu -11 300 1 2095 134 8 17 chr13 92911360 92911718 -8961451 + THE1A LTR MaLR 1 355 0 303 245 49 10 chr13 92911771 92911873 -8961296 - L1M4 LINE L1 -3430 2716 2611 23 0 0 0 chr13 92912114 92912137 -8961032 + AT_rich Low_complexity Low_complexity 1 23 0 1507 141 40 11 chr13 92912139 92912416 -8960753 + L1MA5A LINE L1 6010 6294 -3 198 250 0 0 chr13 92913135 92913183 -8959986 - L2 LINE L2 -16 3256 3209 225 261 106 127 chr13 92913691 92913974 -8959195 + L2 LINE L2 2993 3269 -3 217 260 115 19 chr13 92915090 92915194 -8957975 - MIR SINE MIR -42 220 107 360 0 0 0 chr13 92916756 92916796 -8956373 + (TG)n Simple_repeat Simple_repeat 2 41 0 2098 118 3 7 chr13 92917372 92917676 -8955493 - AluSg SINE Alu -7 303 1 211 276 8 63 chr13 92917828 92917955 -8955214 - L2 LINE L2 -220 3052 2933 231 246 220 8 chr13 92918792 92918910 -8954259 - MIR SINE MIR -1 261 119 1072 207 0 0 chr13 92918949 92919157 -8954012 + MER3 DNA MER1_type 2 209 0 849 224 0 0 chr13 92920449 92920619 -8952550 - MER5A DNA MER1_type -14 175 6 368 350 119 16 chr13 92920651 92920954 -8952215 + L3 LINE CR1 1241 1574 -3 354 367 128 22 chr13 92921407 92921867 -8951302 + L1ME4a LINE L1 5337 5845 -276 387 105 0 0 chr13 92922752 92922809 -8950360 + (TG)n Simple_repeat Simple_repeat 1 57 0 412 345 67 0 chr13 92924211 92924405 -8948764 - MIR SINE MIR -51 211 5 207 0 0 0 chr13 92924544 92924567 -8948602 + (TG)n Simple_repeat Simple_repeat 2 24 0 1190 177 50 138 chr13 92924750 92925128 -8948041 + MER7A DNA MER2_type 1 343 -3 248 193 21 62 chr13 92926647 92926792 -8946377 + (TA)n Simple_repeat Simple_repeat 2 140 0 3001 104 2 5 chr13 92927135 92927578 -8945591 + L1PA13 LINE L1 5717 6158 -5 2268 102 0 7 chr13 92929198 92929493 -8943676 + AluSx SINE Alu 1 293 -19 301 231 128 67 chr13 92929669 92929864 -8943305 - MER58C DNA MER1_type 0 215 9 7164 55 5 13 chr13 92930241 92931403 -8941766 - L1PA8 LINE L1 0 6172 5033 1022 94 0 126 chr13 92931879 92932012 -8941157 + AluSg SINE Alu 14 117 -193 450 0 0 0 chr13 92932012 92932062 -8941107 + (CA)n Simple_repeat Simple_repeat 1 50 0 1022 94 0 126 chr13 92932062 92932119 -8941050 + AluSg SINE Alu 117 180 -130 212 304 87 11 chr13 92935482 92935574 -8937595 + MIR SINE MIR 50 148 -60 2106 161 51 21 chr13 92935729 92936159 -8937010 - MER65A LTR ERV1 0 445 3 21 0 0 0 chr13 92936483 92936504 -8936665 + AT_rich Low_complexity Low_complexity 1 21 0 804 241 18 13 chr13 92936787 92937011 -8936158 + LTR65 LTR ERV1 167 391 -278 234 282 126 48 chr13 92937227 92937433 -8935736 + MER90 LTR ERV1 384 605 -9 202 422 52 7 chr13 92939013 92939167 -8934002 + L2 LINE L2 2870 3030 -242 940 154 72 6 chr13 92939443 92939746 -8933423 - MSTD LTR MaLR 0 396 1 464 182 0 0 chr13 92940632 92940709 -8932460 - AluSg/x SINE Alu -27 282 206 1041 169 6 0 chr13 92940709 92940869 -8932300 - AluJb SINE Alu -149 163 3 25 0 0 0 chr13 92941671 92941696 -8931473 + AT_rich Low_complexity Low_complexity 1 25 0 966 223 17 24 chr13 92942249 92942536 -8930633 + L1M4 LINE L1 2238 2522 -3624 1167 157 26 0 chr13 92942637 92942828 -8930341 - AluSx SINE Alu -116 196 1 492 299 108 0 chr13 92942890 92943204 -8929965 + L1ME4a LINE L1 5588 5935 -186 2132 138 16 37 chr13 92944050 92944433 -8928736 - THE1C LTR MaLR 0 375 1 233 274 0 0 chr13 92944857 92944908 -8928261 + L2 LINE L2 3263 3313 0 322 281 8 4 chr13 92945888 92946152 -8927017 + (TG)n Simple_repeat Simple_repeat 1 265 0 457 296 11 0 chr13 92946196 92946372 -8926797 + (TG)n Simple_repeat Simple_repeat 2 179 0 198 0 0 0 chr13 92946435 92946457 -8926712 + (TG)n Simple_repeat Simple_repeat 2 23 0 1612 150 60 4 chr13 92948472 92948738 -8924431 + AluJb SINE Alu 5 285 -27 2118 114 7 7 chr13 92950520 92950828 -8922341 + AluSg SINE Alu 1 308 -2 28 86 0 0 chr13 92950970 92951040 -8922129 + AT_rich Low_complexity Low_complexity 1 70 0 1982 104 4 0 chr13 92951993 92952261 -8920908 - AluY SINE Alu -42 269 1 186 43 0 0 chr13 92953266 92953289 -8919880 + (A)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr13 92954245 92954265 -8918904 + (TA)n Simple_repeat Simple_repeat 1 20 0 315 265 31 31 chr13 92954330 92954428 -8918741 + MER5A DNA MER1_type 6 103 -86 243 0 0 0 chr13 92955314 92955341 -8917828 + (CA)n Simple_repeat Simple_repeat 1 27 0 220 301 84 48 chr13 92955349 92955432 -8917737 - MIR SINE MIR -149 113 28 2095 136 3 3 chr13 92955696 92955997 -8917172 + AluSx SINE Alu 1 301 -11 250 284 42 21 chr13 92956715 92956801 -8916368 - MIR SINE MIR -76 132 42 2009 168 0 0 chr13 92956801 92957099 -8916070 + AluSx SINE Alu 1 298 -14 2020 185 70 22 chr13 92958817 92959261 -8913908 - MLT1C LTR MaLR -2 465 1 2056 126 7 0 chr13 92960345 92960647 -8912522 - AluY SINE Alu -3 308 5 2330 99 0 16 chr13 92962214 92962528 -8910641 + AluY SINE Alu 1 309 -2 758 274 55 0 chr13 92962897 92963116 -8910053 + MIR SINE MIR 28 258 -4 244 282 14 70 chr13 92963189 92963260 -8909909 - MIR SINE MIR -110 98 32 433 103 0 0 chr13 92963511 92963579 -8909590 + L1PA5 LINE L1 6083 6150 -4 977 166 31 0 chr13 92963785 92963978 -8909191 + L1MB2 LINE L1 5959 6157 -14 24 0 0 0 chr13 92963978 92964002 -8909167 + AT_rich Low_complexity Low_complexity 1 24 0 2106 115 10 0 chr13 92964554 92964850 -8908319 - AluSg SINE Alu -11 299 1 2262 81 7 0 chr13 92964912 92965219 -8907950 + L1PA8 LINE L1 5856 6164 -8 185 142 88 0 chr13 92965241 92965354 -8907815 + (TA)n Simple_repeat Simple_repeat 2 124 0 2881 136 47 0 chr13 92965579 92966043 -8907126 + MER1A DNA MER1_type 44 529 0 193 239 22 0 chr13 92966886 92966932 -8906237 - L2 LINE L2 0 3272 3226 296 319 115 53 chr13 92968121 92968209 -8904960 + L2 LINE L2 2994 3075 -238 2529 124 8 0 chr13 92968209 92968581 -8904588 + THE1C LTR MaLR 1 375 0 296 319 115 53 chr13 92968581 92968747 -8904422 + L2 LINE L2 3075 3313 0 276 293 149 29 chr13 92970045 92970253 -8902916 + MIR SINE MIR 29 261 -1 186 301 80 85 chr13 92971156 92971332 -8901837 + MIR3 SINE MIR 16 190 -18 1009 112 135 11 chr13 92971578 92971756 -8901413 + THE1C LTR MaLR 1 200 -175 1027 123 37 0 chr13 92972076 92972238 -8900931 + THE1C LTR MaLR 208 375 0 1399 190 0 7 chr13 92972661 92972950 -8900219 + L1 LINE L1 4868 5154 -992 265 239 145 24 chr13 92973212 92973335 -8899834 - MIR3 SINE MIR 0 208 66 2277 113 3 6 chr13 92974370 92974714 -8898455 - L1PA14 LINE L1 -2 6159 5817 1904 159 15 0 chr13 92974723 92975056 -8898113 - L1PB1 LINE L1 0 6151 5814 4894 188 31 2 chr13 92976308 92977404 -8895765 + L1MC2 LINE L1 5183 6310 -34 306 276 173 12 chr13 92977987 92978241 -8894928 - L1MC4a LINE L1 -1922 5886 5592 317 192 0 55 chr13 92979762 92979835 -8893334 - MLT1D LTR MaLR -434 71 3 931 245 157 9 chr13 92979837 92980217 -8892952 + L1MC/D LINE L1 5407 5846 -357 306 241 0 13 chr13 92980217 92980296 -8892873 + L1ME3A LINE L1 5880 5957 -213 393 75 0 0 chr13 92980509 92980562 -8892607 + (TA)n Simple_repeat Simple_repeat 2 54 0 330 320 75 19 chr13 92980652 92980847 -8892322 + MIR3 SINE MIR 2 204 -58 307 308 62 0 chr13 92981664 92981810 -8891359 - L1ME4a LINE L1 -203 5918 5764 195 339 46 0 chr13 92982751 92982816 -8890353 + L2 LINE L2 3205 3272 0 372 265 250 0 chr13 92982998 92983134 -8890035 - MER5A DNA MER1_type -7 182 13 524 273 17 40 chr13 92983147 92983323 -8889846 - MER5B DNA MER1_type -4 174 3 2746 171 84 6 chr13 92983624 92984255 -8888914 - L1MA4 LINE L1 0 6300 5621 22 0 0 0 chr13 92985081 92985103 -8888066 + AT_rich Low_complexity Low_complexity 1 22 0 293 192 10 91 chr13 93085226 93085325 -8787844 + MER5C DNA MER1_type 227 317 -7 460 322 29 15 chr13 93085385 93085590 -8787579 + MIR SINE MIR 19 226 -36 1940 135 28 90 chr13 93085640 93086040 -8787129 - Tigger2 DNA MER2_type 0 2718 2344 670 131 15 95 chr13 93086036 93086173 -8786996 - Tigger2 DNA MER2_type -2590 128 3 * 282 167 0 0 chr13 93086470 93086530 -8786639 + (TA)n Simple_repeat Simple_repeat 2 61 0 241 304 59 0 chr13 93087546 93087648 -8785521 - MIR3 SINE MIR -100 108 1 230 297 33 0 chr13 93088045 93088136 -8785033 + MLT1J LTR MaLR 24 117 -394 511 344 36 36 chr13 93088140 93088448 -8784721 + L2 LINE L2 2553 2860 -454 1474 101 31 18 chr13 93088478 93088706 -8784463 - L1PA10 LINE L1 0 6168 5938 193 369 0 0 chr13 93088951 93089035 -8784134 + L2 LINE L2 3182 3265 -7 216 0 0 0 chr13 93089375 93089399 -8783770 + (TTA)n Simple_repeat Simple_repeat 1 24 0 581 320 41 26 chr13 93090321 93090569 -8782600 - MIR SINE MIR 0 262 12 345 267 22 59 chr13 93090678 93090813 -8782356 - L2 LINE L2 -5 3308 3179 1989 161 0 0 chr13 93092029 93092328 -8780841 + AluSx SINE Alu 2 300 -12 2052 91 4 0 chr13 93092328 93092635 -8780534 + AluSp SINE Alu 22 329 0 1825 118 69 147 chr13 93092976 93093017 -8780152 - MSTA LTR MaLR 0 428 385 2523 64 0 0 chr13 93093017 93093328 -8779841 + AluY SINE Alu 1 311 0 1825 118 69 147 chr13 93093328 93093595 -8779574 - MSTA LTR MaLR -43 385 165 2007 71 48 61 chr13 93093595 93093890 -8779279 - AluY SINE Alu -15 296 6 1825 118 69 147 chr13 93093890 93094044 -8779125 - MSTA LTR MaLR -263 165 1 24 0 0 0 chr13 93095376 93095400 -8777769 + AT_rich Low_complexity Low_complexity 1 24 0 296 260 41 0 chr13 93096423 93096496 -8776673 - MIR SINE MIR -150 112 37 23 0 0 0 chr13 93097691 93097714 -8775455 + AT_rich Low_complexity Low_complexity 1 23 0 352 242 133 0 chr13 93099243 93099363 -8773806 + MIR SINE MIR 95 230 -32 236 191 0 0 chr13 93099402 93099444 -8773725 + (ATG)n Simple_repeat Simple_repeat 1 42 0 278 180 0 0 chr13 93099464 93099514 -8773655 + L2 LINE L2 3262 3311 -2 247 349 0 28 chr13 93099705 93099814 -8773355 - MIR SINE MIR -71 191 86 351 348 9 0 chr13 93100485 93100600 -8772569 - MIR SINE MIR -146 116 1 27 0 0 0 chr13 93102224 93102251 -8770918 + AT_rich Low_complexity Low_complexity 1 27 0 340 148 9 37 chr13 93102767 93102875 -8770294 + (TA)n Simple_repeat Simple_repeat 2 106 0 25 51 0 0 chr13 93102916 93102955 -8770214 + AT_rich Low_complexity Low_complexity 1 39 0 704 45 34 56 chr13 93102959 93103137 -8770032 + (TA)n Simple_repeat Simple_repeat 1 174 0 236 289 62 0 chr13 93103235 93103332 -8769837 + L1ME LINE L1 5715 5817 -304 435 271 176 32 chr13 93103424 93103645 -8769524 - MLT1J1 LTR MaLR 0 446 194 402 184 5 81 chr13 93104028 93104213 -8768956 + (CATATA)n Simple_repeat Simple_repeat 3 173 0 340 269 46 15 chr13 93104226 93104356 -8768813 + (CATATA)n Simple_repeat Simple_repeat 4 137 0 632 160 0 40 chr13 93104357 93104532 -8768637 + (TA)n Simple_repeat Simple_repeat 2 169 0 396 172 71 121 chr13 93107183 93107243 -8765926 + MER53 DNA DNA 2 63 -126 1765 163 14 0 chr13 93107243 93107526 -8765643 + AluJo SINE Alu 1 287 -25 396 172 71 121 chr13 93107526 93107663 -8765506 + MER53 DNA DNA 63 189 0 308 311 0 19 chr13 93108365 93108471 -8764698 + MIR SINE MIR 159 262 0 1984 128 125 31 chr13 93108642 93109033 -8764136 - MSTA LTR MaLR 0 428 1 26 0 0 0 chr13 93110661 93110687 -8762482 + AT_rich Low_complexity Low_complexity 1 26 0 435 107 80 0 chr13 93110921 93111033 -8762136 + GA-rich Low_complexity Low_complexity 4 124 0 256 349 85 19 chr13 93111133 93111239 -8761930 - L2 LINE L2 -35 3237 3125 770 214 16 37 chr13 93111929 93112116 -8761053 - MLT1C LTR MaLR 0 467 285 369 189 27 0 chr13 93112111 93112185 -8760984 - MLT1J1 LTR MaLR -314 76 1 * 1493 239 81 7 chr13 93112623 93113058 -8760111 - MLT1C LTR MaLR 0 467 1 867 81 0 16 chr13 93113123 93113247 -8759922 + L1PA8 LINE L1 6047 6168 -4 283 284 59 20 chr13 93114106 93114208 -8758961 + MIR3 SINE MIR 65 170 -38 184 255 21 0 chr13 93115122 93115169 -8758000 - MIR SINE MIR -124 84 37 24 0 0 0 chr13 93115344 93115368 -8757801 + AT_rich Low_complexity Low_complexity 1 24 0 260 225 19 100 chr13 93115706 93115858 -8757311 + MIR SINE MIR 15 148 -61 234 0 0 0 chr13 93117916 93117942 -8755227 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr13 93117941 93117975 -8755194 + (CA)n Simple_repeat Simple_repeat 1 34 0 200 240 165 70 chr13 93118311 93118511 -8754658 + MIR SINE MIR 38 256 -6 1721 167 4 0 chr13 93119075 93119339 -8753830 - AluJb SINE Alu -33 279 15 186 43 0 0 chr13 93120376 93120399 -8752770 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 471 298 23 0 chr13 93120419 93120590 -8752579 + MIR SINE MIR 72 246 -16 382 288 34 67 chr13 93121122 93121346 -8751823 + MIR SINE MIR 2 223 -39 33 0 0 0 chr13 93121801 93121834 -8751335 + AT_rich Low_complexity Low_complexity 1 33 0 200 343 128 40 chr13 93122508 93123054 -8750115 + L2 LINE L2 2164 2757 -557 375 329 19 13 chr13 93123271 93123429 -8749740 - MIR SINE MIR -64 198 40 1953 129 32 0 chr13 93123998 93124278 -8748891 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr13 93125143 93125165 -8748004 + AT_rich Low_complexity Low_complexity 1 22 0 630 283 22 31 chr13 93126878 93127104 -8746065 + MIR SINE MIR 39 262 0 351 352 88 33 chr13 93127635 93127942 -8745227 + L2 LINE L2 2435 2758 -556 279 331 44 29 chr13 93128253 93128389 -8744780 + L2 LINE L2 3172 3309 -4 319 316 58 0 chr13 93128542 93128681 -8744488 + MIR SINE MIR 3 149 -113 21 0 0 0 chr13 93128821 93128842 -8744327 + AT_rich Low_complexity Low_complexity 1 21 0 2709 19 0 22 chr13 93130237 93130550 -8742619 + AluYa5 SINE Alu 1 306 -5 1999 122 0 17 chr13 93132602 93132942 -8740227 - AluY SINE Alu 0 311 1 2016 138 73 3 chr13 93133026 93133367 -8739802 + MSTA LTR MaLR 1 365 -63 2292 89 0 7 chr13 93133368 93133672 -8739497 - AluSc SINE Alu -7 302 1 746 157 0 8 chr13 93133856 93133977 -8739192 + FLAM_C SINE Alu 9 128 -15 811 233 28 36 chr13 93134078 93134640 -8738529 - L1 LINE L1 -3579 3986 3359 563 149 0 53 chr13 93135239 93135353 -8737816 - FLAM_A SINE Alu -13 129 22 478 274 16 8 chr13 93136340 93136464 -8736705 + L2 LINE L2 3188 3312 -1 273 133 40 0 chr13 93137455 93137530 -8735639 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 2125 129 0 0 chr13 93137792 93138094 -8735075 - AluSc SINE Alu -7 302 1 200 318 61 0 chr13 93139349 93139415 -8733754 + MIR SINE MIR 180 249 -13 249 83 0 0 chr13 93139642 93139678 -8733491 + (CA)n Simple_repeat Simple_repeat 2 37 0 225 333 70 45 chr13 93139696 93139852 -8733317 - MIR SINE MIR -33 229 70 26 30 0 0 chr13 93143695 93143728 -8729441 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 93143905 93143926 -8729243 + AT_rich Low_complexity Low_complexity 1 21 0 5086 201 68 26 chr13 93144588 93145823 -8727346 + L1MC3 LINE L1 6499 7785 0 946 311 56 17 chr13 93147136 93147599 -8725570 + L2 LINE L2 1536 2016 -1298 515 355 96 0 chr13 93147709 93147929 -8725240 + Zaphod DNA AcHobo 96 336 -3695 360 234 96 111 chr13 93147937 93148470 -8724699 + Zaphod DNA AcHobo 446 970 -3061 556 216 98 1 chr13 93148492 93148801 -8724368 + Zaphod DNA AcHobo 3614 3983 -48 270 296 142 84 chr13 93149111 93149206 -8723963 + L2 LINE L2 2044 2132 -1182 2231 95 0 0 chr13 93149206 93149490 -8723679 - AluSg SINE Alu -15 295 12 270 296 142 84 chr13 93149490 93149620 -8723549 + L2 LINE L2 2132 2282 -1032 305 215 0 13 chr13 93150311 93150390 -8722779 + GA-rich Low_complexity Low_complexity 2 79 0 369 145 0 0 chr13 93150411 93150473 -8722696 + (GGGGA)n Simple_repeat Simple_repeat 4 65 0 430 297 93 50 chr13 93150522 93150939 -8722230 - MLT1J1 LTR MaLR -11 435 1 2266 107 0 7 chr13 93151752 93152052 -8721117 - AluSg SINE Alu -12 298 1 721 206 138 12 chr13 93152683 93152843 -8720326 - AluJo SINE Alu -124 188 9 1427 247 6 11 chr13 93153620 93153972 -8719197 - MLT1A2 LTR MaLR -21 353 4 22 0 0 0 chr13 93155074 93155096 -8718073 + AT_rich Low_complexity Low_complexity 1 22 0 189 433 8 8 chr13 93155221 93155355 -8717814 + MIR SINE MIR 20 153 -109 2329 102 3 0 chr13 93156772 93157067 -8716102 + AluSx SINE Alu 3 298 -14 270 320 54 27 chr13 93157271 93157418 -8715751 + MLT1K LTR MaLR 37 187 -401 379 270 0 0 chr13 93157844 93157933 -8715236 - L1MC4 LINE L1 -1339 6703 6615 349 292 0 0 chr13 93157856 93157945 -8715224 + L1MC4 LINE L1 6614 6702 -1340 * 385 263 266 16 chr13 93159557 93159861 -8713308 - MLT1E LTR MaLR -78 515 136 406 338 95 35 chr13 93160548 93160691 -8712478 - L2 LINE L2 0 3313 3180 363 23 0 0 chr13 93160691 93160735 -8712434 + (TG)n Simple_repeat Simple_repeat 1 44 0 406 338 95 35 chr13 93160735 93160990 -8712179 - L2 LINE L2 -133 3180 2891 * 602 330 184 22 chr13 93160963 93161697 -8711472 - L2 LINE L2 -1491 1823 971 3141 287 121 60 chr13 93162279 93164059 -8709110 - L2 LINE L2 -1028 2286 397 207 0 0 0 chr13 93164819 93164842 -8708327 + (CA)n Simple_repeat Simple_repeat 2 24 0 1258 201 79 18 chr13 93167459 93167737 -8705432 + AluJo SINE Alu 5 299 -3 1105 294 107 44 chr13 93167821 93168303 -8704866 + L1MEc LINE L1 108 558 -5838 2343 97 0 0 chr13 93168303 93168602 -8704567 + AluSq SINE Alu 1 299 -14 1105 294 107 44 chr13 93168602 93169515 -8703654 + L1MEc LINE L1 558 1591 -4805 340 154 0 0 chr13 93169626 93169691 -8703478 - L1MA9 LINE L1 -25 6287 6223 1943 180 23 44 chr13 93169692 93170126 -8703043 - MSTB1 LTR MaLR 0 432 8 2100 168 19 7 chr13 93170134 93170562 -8702607 - L1MA9 LINE L1 -87 6225 5793 466 247 6 94 chr13 93170565 93170735 -8702434 - Tigger2 DNA MER2_type 0 2718 2564 * 915 211 10 0 chr13 93170734 93170942 -8702227 - Tigger2 DNA MER2_type -2508 210 1 2252 176 25 2 chr13 93170964 93171459 -8701710 - L1MA9 LINE L1 -524 5788 5282 794 133 42 0 chr13 93171479 93171622 -8701547 - L1MA9 LINE L1 -371 5941 5793 711 219 20 0 chr13 93171626 93171777 -8701392 - Tigger2 DNA MER2_type -11 2707 2554 321 65 0 0 chr13 93171774 93171820 -8701349 - Tigger2 DNA MER2_type -2505 213 168 * 582 98 39 10 chr13 93171820 93171922 -8701247 + L1 LINE L1 3852 3956 -2190 1994 157 0 0 chr13 93172261 93172567 -8700602 - AluSx SINE Alu 0 312 7 489 130 0 0 chr13 93172569 93172646 -8700523 + MSTB LTR MaLR 350 426 0 3800 189 28 25 chr13 93172646 93173099 -8700070 - L1MB2 LINE L1 -40 6131 5681 2112 128 7 0 chr13 93173099 93173404 -8699765 - AluSp SINE Alu -6 307 1 3800 189 28 25 chr13 93173404 93173968 -8699201 - L1MB2 LINE L1 -490 5681 5112 2597 108 8 3 chr13 93173975 93174337 -8698832 + THE1B LTR MaLR 1 364 0 186 370 20 20 chr13 93174343 93174443 -8698726 - MIR SINE MIR -68 140 41 23 0 0 0 chr13 93174765 93174788 -8698381 + AT_rich Low_complexity Low_complexity 1 23 0 405 312 112 12 chr13 93175392 93175562 -8697607 - MIR SINE MIR -41 221 35 2469 68 0 13 chr13 93178647 93178955 -8694214 + AluY SINE Alu 1 304 -7 244 302 72 27 chr13 93179415 93179548 -8693621 + MIR SINE MIR 3 141 -67 304 311 9 9 chr13 93179850 93179956 -8693213 - MIR SINE MIR -73 135 30 2168 136 0 3 chr13 93180673 93180983 -8692186 - AluSg SINE Alu -1 309 1 270 0 0 0 chr13 93182556 93182586 -8690583 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr13 93183468 93183493 -8689676 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 1844 137 51 0 chr13 93183899 93184070 -8689099 - AluJo SINE Alu -5 307 113 356 21 42 0 chr13 93184070 93184118 -8689051 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1844 137 51 0 chr13 93184118 93184238 -8688931 - AluJo SINE Alu -199 113 1 424 336 115 42 chr13 93184239 93184396 -8688773 - L2 LINE L2 -225 3047 2903 1434 229 60 29 chr13 93184396 93184845 -8688324 - MLT1C LTR MaLR -3 464 2 424 336 115 42 chr13 93184845 93185340 -8687829 - L2 LINE L2 -369 2903 2343 215 259 0 37 chr13 93185337 93185391 -8687778 + L2 LINE L2 3203 3254 -18 * 368 291 37 15 chr13 93185417 93185551 -8687618 - L2 LINE L2 -960 2354 2218 188 98 0 73 chr13 93186498 93186539 -8686630 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 25 31 0 0 chr13 93186672 93186704 -8686465 + AT_rich Low_complexity Low_complexity 1 32 0 2752 10 0 0 chr13 93187618 93187920 -8685249 - AluY SINE Alu -9 302 1 415 270 30 0 chr13 93188104 93188204 -8684965 - MER5A DNA MER1_type -83 106 4 1983 149 0 3 chr13 93188459 93188754 -8684415 - AluSx SINE Alu -13 299 6 230 405 92 0 chr13 93189098 93189251 -8683918 + L2 LINE L2 3100 3266 -6 212 171 0 0 chr13 93191602 93191643 -8681526 - MIR3 SINE MIR 0 208 168 1189 202 53 1 chr13 93192535 93192834 -8680335 + MER33 DNA MER1_type 1 302 -22 282 406 35 0 chr13 93193134 93193277 -8679892 - L2 LINE L2 0 3272 3125 225 94 0 0 chr13 93193286 93193318 -8679851 + (A)n Simple_repeat Simple_repeat 1 32 0 183 306 153 32 chr13 93193421 93193545 -8679624 - MIR SINE MIR -76 186 48 1040 204 21 36 chr13 93193989 93194269 -8678900 - MER58B DNA MER1_type -7 334 59 284 257 40 0 chr13 93194777 93194851 -8678318 - MIR SINE MIR -69 193 117 540 201 152 57 chr13 93196779 93197128 -8676041 + Charlie7 DNA MER1_type 1722 2103 -509 2936 183 74 37 chr13 93198085 93198786 -8674383 + LTR8A LTR ERV1 1 727 0 1784 148 39 3 chr13 93198813 93199096 -8674073 + AluSx SINE Alu 1 293 -19 32 0 0 0 chr13 93199115 93199147 -8674022 + AT_rich Low_complexity Low_complexity 1 32 0 290 247 35 35 chr13 93199453 93199538 -8673631 + L2 LINE L2 3188 3272 0 389 152 10 131 chr13 93199722 93199767 -8673402 - LTR26 LTR ERV1 -119 484 456 2027 127 35 0 chr13 93199767 93200051 -8673118 - AluSx SINE Alu -17 295 2 389 152 10 131 chr13 93200051 93200104 -8673065 - LTR26 LTR ERV1 -147 456 398 1841 141 6 47 chr13 93200160 93200356 -8672813 + LTR26 LTR ERV1 298 478 -125 3358 166 54 38 chr13 93200356 93201036 -8672133 + LTR8 LTR ERV1 1 691 0 1841 141 6 47 chr13 93201036 93201158 -8672011 + LTR26 LTR ERV1 478 603 0 2561 121 11 3 chr13 93202104 93202476 -8670693 - THE1C LTR MaLR 0 375 1 182 296 0 19 chr13 93203058 93203112 -8670057 - L2 LINE L2 -48 3265 3213 288 325 65 16 chr13 93203145 93203268 -8669901 + MIR3 SINE MIR 6 134 -74 413 313 75 19 chr13 93203306 93203520 -8669649 - LTR33 LTR ERVL -4 517 292 324 70 0 0 chr13 93207488 93207531 -8665638 + (TG)n Simple_repeat Simple_repeat 1 43 0 2439 63 0 3 chr13 93207787 93208086 -8665083 - AluY SINE Alu -13 298 1 519 85 0 24 chr13 93208279 93208361 -8664808 - MADE1 DNA Mariner 0 80 1 239 196 43 0 chr13 93208945 93208991 -8664178 + L2 LINE L2 3224 3271 -1 27 29 0 0 chr13 93209282 93209316 -8663853 + AT_rich Low_complexity Low_complexity 1 34 0 2023 131 7 7 chr13 93209491 93209789 -8663380 + AluSg SINE Alu 1 298 -12 728 73 40 8 chr13 93209804 93209928 -8663241 + GA-rich Low_complexity Low_complexity 3 130 0 23 0 0 0 chr13 93210361 93210384 -8662785 + AT_rich Low_complexity Low_complexity 1 23 0 430 242 210 8 chr13 93210611 93210735 -8662434 + MER20 DNA MER1_type 4 152 -67 5573 118 18 9 chr13 93211876 93213002 -8660167 + L1PA13 LINE L1 5029 6162 -1 216 158 0 0 chr13 93213162 93213200 -8659969 + (TG)n Simple_repeat Simple_repeat 2 39 0 561 321 74 15 chr13 93214524 93214795 -8658374 - L3 LINE CR1 -739 838 552 984 193 26 26 chr13 93214821 93215049 -8658120 - L1ME2 LINE L1 -2 6162 5935 261 0 0 0 chr13 93215131 93215160 -8658009 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 694 251 48 0 chr13 93216063 93216230 -8656939 + MER5B DNA MER1_type 4 178 0 776 192 0 0 chr13 93216413 93216543 -8656626 - FLAM_A SINE Alu -3 130 1 2349 107 0 0 chr13 93217387 93217697 -8655472 - AluSg SINE Alu 0 310 1 191 250 0 50 chr13 93218937 93218977 -8654192 - L2 LINE L2 -87 3185 3148 1451 167 80 52 chr13 93220934 93221299 -8651870 - THE1C LTR MaLR 0 375 1 282 116 0 0 chr13 93222139 93222182 -8650987 - FRAM/FAM SINE Alu -84 82 40 216 97 0 0 chr13 93222763 93222794 -8650375 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 402 315 56 7 chr13 93223525 93223668 -8649501 - MLT1I LTR MaLR -102 307 158 334 327 131 0 chr13 93223868 93223975 -8649194 + MER115 DNA AcHobo 2 122 -571 939 260 40 27 chr13 93223978 93225804 -8647365 + L1ME2 LINE L1 3168 6153 -11 252 0 0 0 chr13 93225804 93225832 -8647337 + (CA)n Simple_repeat Simple_repeat 2 29 0 1130 268 19 0 chr13 93225833 93226195 -8646974 + L1MB8 LINE L1 2689 3057 -3089 2915 245 76 23 chr13 93226230 93227292 -8645877 + L1MB8 LINE L1 4086 5204 -942 753 207 53 11 chr13 93227286 93227474 -8645695 + L1MB8 LINE L1 5505 5700 -478 * 41560 56 13 1 chr13 93227880 93233940 -8639229 - L1PA5 LINE L1 -5 6149 11 1844 200 33 25 chr13 93233946 93234426 -8638743 + L1MB8 LINE L1 5690 6173 -5 195 42 0 0 chr13 93234456 93234480 -8638689 + (GA)n Simple_repeat Simple_repeat 2 25 0 351 326 56 7 chr13 93234647 93234791 -8638378 + MIR3 SINE MIR 44 194 -14 23 33 0 0 chr13 93236430 93236460 -8636709 + AT_rich Low_complexity Low_complexity 1 30 0 2365 88 0 10 chr13 93236539 93236847 -8636322 + AluSp SINE Alu 1 305 -8 645 113 9 9 chr13 93236912 93237018 -8636151 + L1M1 LINE L1 5626 5731 -573 1704 172 3 30 chr13 93237116 93237413 -8635756 + AluJo SINE Alu 1 289 -23 29 0 0 0 chr13 93237432 93237461 -8635708 + AT_rich Low_complexity Low_complexity 1 29 0 364 253 44 0 chr13 93237471 93237562 -8635607 - MER20 DNA MER1_type 0 219 125 619 245 38 54 chr13 93237589 93237773 -8635396 + MLT2B1 LTR ERVL 290 470 -50 318 120 0 0 chr13 93237815 93237865 -8635304 + MLT2B1 LTR ERVL 465 514 -6 433 322 7 14 chr13 93237876 93238019 -8635150 - MIR SINE MIR -87 175 34 1941 106 0 0 chr13 93239510 93239789 -8633380 - AluSx SINE Alu 0 305 27 2296 71 0 3 chr13 93240591 93240887 -8632282 - AluY SINE Alu -16 295 1 3437 165 11 48 chr13 93241071 93241805 -8631364 + L1MA4 LINE L1 5589 6295 -5 3115 180 3 0 chr13 93241810 93242378 -8630791 - L1PA12 LINE L1 -990 5156 4587 6417 95 2 8 chr13 93242379 93243391 -8629778 + L1PA12 LINE L1 5165 6168 0 507 247 101 0 chr13 93245802 93245960 -8627209 - MIR SINE MIR -10 252 79 211 211 0 0 chr13 93246822 93246860 -8626309 + (CA)n Simple_repeat Simple_repeat 1 38 0 998 178 6 0 chr13 93247020 93247183 -8625986 + AluJ SINE Alu 1 164 -148 846 147 0 0 chr13 93247245 93247374 -8625795 + AluJ SINE Alu 167 295 -17 291 247 111 0 chr13 93248436 93248517 -8624652 - L3 LINE CR1 -9 1568 1479 255 344 105 34 chr13 93248579 93248873 -8624296 - L3 LINE CR1 -684 893 579 305 253 12 36 chr13 93249366 93249449 -8623720 + L2 LINE L2 3233 3313 0 323 231 65 19 chr13 93251130 93251238 -8621931 + L1ME4a LINE L1 5984 6096 -25 7486 33 0 0 chr13 93252550 93254113 -8619056 - L1PA4 LINE L1 -6 6149 4590 1076 37 0 0 chr13 93254113 93254249 -8618920 + L1PA4 LINE L1 4441 4576 -1570 23 33 0 0 chr13 93254464 93254494 -8618675 + AT_rich Low_complexity Low_complexity 1 30 0 1867 182 39 3 chr13 93254751 93255113 -8618056 - Tigger2 DNA MER2_type 0 2718 2344 672 188 8 8 chr13 93255109 93255237 -8617932 - Tigger2 DNA MER2_type -2590 128 1 * 2225 144 8 19 chr13 93256446 93256822 -8616347 - THE1C LTR MaLR 0 375 4 2244 56 0 11 chr13 93258771 93259102 -8614067 + AluY SINE Alu 1 328 0 6361 53 0 14 chr13 93259707 93260040 -8613129 - L1PA7 LINE L1 -2 6152 5816 2149 118 7 3 chr13 93260040 93260337 -8612832 - AluSc SINE Alu -11 298 1 6361 53 0 14 chr13 93260337 93260852 -8612317 - L1PA7 LINE L1 -338 5816 5316 187 318 0 0 chr13 93261190 93261253 -8611916 + L2 LINE L2 3251 3313 0 7589 30 0 0 chr13 93262516 93263522 -8609647 - L1PA3 LINE L1 -5 6150 5146 456 287 51 8 chr13 93263678 93263915 -8609254 + L1ME LINE L1 5568 5814 -307 303 304 27 38 chr13 93264123 93264307 -8608862 - Charlie8 DNA MER1_type -2198 219 38 302 315 73 12 chr13 93264693 93264858 -8608311 + MIR SINE MIR 70 244 -18 2251 92 10 0 chr13 93265135 93265429 -8607740 + AluY SINE Alu 1 297 -14 21 36 0 0 chr13 93265690 93265718 -8607451 + AT_rich Low_complexity Low_complexity 1 28 0 342 322 49 33 chr13 93266383 93266566 -8606603 + MIR SINE MIR 22 207 -55 2143 96 0 0 chr13 93266757 93267039 -8606130 + AluSc SINE Alu 1 282 -27 325 310 32 19 chr13 93267187 93267342 -8605827 - MIR SINE MIR 0 262 106 1238 302 74 43 chr13 93267355 93267886 -8605283 - L2 LINE L2 -69 3244 2681 1427 170 52 0 chr13 93267886 93268157 -8605012 + L1MC1 LINE L1 6048 6332 -1 1238 302 74 43 chr13 93268157 93268521 -8604648 - L2 LINE L2 -632 2681 2330 205 298 7 37 chr13 93268524 93268628 -8604541 - MIR SINE MIR -94 114 19 200 346 25 37 chr13 93268707 93268788 -8604381 + L2 LINE L2 3157 3236 -36 32 43 0 0 chr13 93268799 93268845 -8604324 + AT_rich Low_complexity Low_complexity 1 46 0 589 303 59 53 chr13 93269802 93270106 -8603063 - L2 LINE L2 0 3313 3008 288 237 132 18 chr13 93270421 93270535 -8602634 - MLT1L LTR MaLR 0 615 489 325 226 24 0 chr13 93270665 93270749 -8602420 - MER3 DNA MER1_type 0 209 124 21 71 0 0 chr13 93271109 93271151 -8602018 + AT_rich Low_complexity Low_complexity 1 42 0 1555 174 67 12 chr13 93273285 93273629 -8599540 - MLT1A2 LTR MaLR -11 363 1 2024 137 26 10 chr13 93274492 93274799 -8598370 - AluSx SINE Alu 0 312 1 1987 106 0 22 chr13 93276171 93276445 -8596724 + AluY SINE Alu 33 300 -11 285 319 78 30 chr13 93276870 93277036 -8596133 + MIR SINE MIR 56 229 -33 2418 41 0 14 chr13 93277364 93277681 -8595488 - AluY SINE Alu 0 311 1 238 293 12 0 chr13 93277750 93277832 -8595337 + (TA)n Simple_repeat Simple_repeat 1 83 0 239 164 0 15 chr13 93278317 93278384 -8594785 + (CA)n Simple_repeat Simple_repeat 1 66 0 5256 99 19 6 chr13 93279095 93279893 -8593276 + L1PA10 LINE L1 5346 6153 -15 297 282 75 75 chr13 93280324 93280498 -8592671 + MIR SINE MIR 35 208 -54 509 302 38 38 chr13 93281751 93281963 -8591206 - MIR SINE MIR -43 219 8 809 167 0 8 chr13 93282535 93282667 -8590502 - FLAM_C SINE Alu -2 131 1 201 306 28 0 chr13 93282674 93282746 -8590423 - MIR SINE MIR -117 145 72 406 325 38 29 chr13 93284740 93284949 -8588220 - MIR SINE MIR -21 241 31 255 274 46 127 chr13 93285085 93285197 -8587972 - MIR SINE MIR -20 242 151 2182 124 0 7 chr13 93285197 93285503 -8587666 - AluSq SINE Alu -9 304 1 255 274 46 127 chr13 93285503 93285587 -8587582 - MIR SINE MIR -111 151 62 219 232 0 0 chr13 93285771 93285827 -8587342 + CT-rich Low_complexity Low_complexity 2 57 0 947 176 32 0 chr13 93285853 93286040 -8587129 + Tigger5 DNA MER2_type 2131 2323 0 248 317 188 45 chr13 93286822 93287446 -8585723 - L2 LINE L2 -652 2662 1950 429 171 0 0 chr13 93287687 93287757 -8585412 + Tigger1 DNA MER2_type 280 349 -2069 852 58 33 0 chr13 93287757 93287877 -8585292 + Tigger1 DNA MER2_type 828 951 -1467 * 1076 181 22 4 chr13 93287862 93288088 -8585081 - Tigger1 DNA MER2_type -2188 230 1 339 25 0 0 chr13 93288156 93288196 -8584973 + (CA)n Simple_repeat Simple_repeat 2 41 0 348 24 0 0 chr13 93289058 93289099 -8584070 + (CA)n Simple_repeat Simple_repeat 1 41 0 210 71 0 0 chr13 93289639 93289667 -8583502 + (T)n Simple_repeat Simple_repeat 1 28 0 909 194 62 28 chr13 93290732 93290943 -8582226 + MER20 DNA MER1_type 1 218 -1 238 310 97 19 chr13 93292625 93292780 -8580389 + L2 LINE L2 3076 3242 -30 1189 239 81 6 chr13 93292900 93293248 -8579921 + MLT1B LTR MaLR 1 374 -16 2620 89 20 8 chr13 93293248 93293639 -8579530 + MLT2A2 LTR ERVL 1 396 -57 2047 125 3 0 chr13 93293643 93293931 -8579238 - AluSq SINE Alu -24 289 1 295 330 110 6 chr13 93294485 93294658 -8578511 + MIR SINE MIR 59 249 -13 957 224 121 21 chr13 93294761 93295092 -8578077 - MLT1A1 LTR MaLR -1 364 1 247 328 8 90 chr13 93298066 93298200 -8574969 + MIR3 SINE MIR 15 137 -71 216 97 0 0 chr13 93298293 93298324 -8574845 + (TC)n Simple_repeat Simple_repeat 1 31 0 740 160 17 0 chr13 93302025 93302144 -8571025 + AluSg/x SINE Alu 179 299 -11 300 27 0 0 chr13 93302949 93302986 -8570183 + (TG)n Simple_repeat Simple_repeat 2 38 0 493 214 56 40 chr13 93303230 93303356 -8569813 + MER63 DNA MER1_type 7 760 -302 1365 258 95 58 chr13 93303568 93304193 -8568976 + MER20B DNA MER1_type 8 663 -120 2190 124 0 3 chr13 93304193 93304492 -8568677 - AluSq SINE Alu -15 298 1 1365 258 95 58 chr13 93304492 93304561 -8568608 + MER20B DNA MER1_type 663 728 -55 453 66 0 0 chr13 93305009 93305083 -8568086 + (TG)n Simple_repeat Simple_repeat 1 135 0 453 66 0 0 chr13 93305083 93305144 -8568025 + (TG)n Simple_repeat Simple_repeat 2 62 0 203 330 97 29 chr13 93305158 93305261 -8567908 + L2 LINE L2 3155 3264 -8 494 188 42 0 chr13 93305418 93305514 -8567655 - MER5A DNA MER1_type -80 109 10 229 235 49 62 chr13 93305663 93305744 -8567425 - L1ME LINE L1 -375 5789 5710 2235 110 0 0 chr13 93305869 93306170 -8566999 - AluSg SINE Alu -9 301 1 182 284 75 15 chr13 93307010 93307077 -8566092 + L2 LINE L2 3201 3271 -1 2793 125 34 5 chr13 93307215 93307630 -8565539 + MSTA LTR MaLR 1 427 -1 22 0 0 0 chr13 93307895 93307917 -8565252 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr13 93307959 93307982 -8565187 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 316 0 22 22 chr13 93308255 93308300 -8564869 + (TAA)n Simple_repeat Simple_repeat 3 47 0 300 53 0 0 chr13 93309701 93309739 -8563430 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1646 167 114 33 chr13 93310086 93310446 -8562723 + MSTA LTR MaLR 1 389 -39 238 254 0 0 chr13 93310721 93310776 -8562393 + (TG)n Simple_repeat Simple_repeat 1 55 0 804 59 10 0 chr13 93312251 93312352 -8560817 - AluY SINE Alu -7 304 203 233 57 0 29 chr13 93312354 93312389 -8560780 - Alu SINE Alu -268 34 1 2144 122 7 0 chr13 93312699 93313003 -8560166 - AluSx SINE Alu -6 306 1 867 228 124 56 chr13 93313154 93313387 -8559782 - MSTD LTR MaLR -3 393 114 221 295 156 35 chr13 93313398 93313571 -8559598 + MIR SINE MIR 13 206 -56 1735 195 67 14 chr13 93313872 93314216 -8558953 - MLT1A1 LTR MaLR -3 362 1 317 340 97 0 chr13 93314420 93314564 -8558605 - MIR SINE MIR -15 247 90 2176 229 98 9 chr13 93316279 93316833 -8556336 - MLT1E2 LTR MaLR 0 626 24 2395 84 10 0 chr13 93317516 93317826 -8555343 - AluSq SINE Alu 0 313 1 231 61 0 0 chr13 93319253 93319286 -8553883 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 32 67 0 0 chr13 93319383 93319443 -8553726 + AT_rich Low_complexity Low_complexity 1 60 0 624 338 48 25 chr13 93320159 93320517 -8552652 - MLT1I LTR MaLR -39 370 5 426 335 38 17 chr13 93320728 93320967 -8552202 - HAL1b LINE L1 -754 594 351 2225 62 12 89 chr13 93321155 93321491 -8551678 - AluY SINE Alu 0 311 2 25 65 0 0 chr13 93321530 93321576 -8551593 + AT_rich Low_complexity Low_complexity 1 46 0 2020 120 3 10 chr13 93322501 93322793 -8550376 + AluSc SINE Alu 1 290 -19 1558 135 120 8 chr13 93323045 93323311 -8549858 - AluSg1 SINE Alu -12 297 2 221 301 169 0 chr13 93323311 93323394 -8549775 + L2 LINE L2 3181 3277 -36 2266 98 0 0 chr13 93324005 93324291 -8548878 + AluSx SINE Alu 1 286 -26 2020 173 35 34 chr13 93325414 93325962 -8547207 - MLT2A2 LTR ERVL 0 554 1 665 238 70 32 chr13 93326471 93326492 -8546677 - L1ME LINE L1 -539 5627 5608 1930 128 42 0 chr13 93326492 93326780 -8546389 - AluSx SINE Alu -12 300 1 665 238 70 32 chr13 93326780 93326966 -8546203 - L1ME LINE L1 -558 5608 5413 238 296 49 0 chr13 93329237 93329318 -8543851 + MLT1J LTR MaLR 100 184 -327 816 305 34 43 chr13 93329326 93329768 -8543401 + L1ME2 LINE L1 5727 6164 0 22 0 0 0 chr13 93330359 93330381 -8542788 + AT_rich Low_complexity Low_complexity 1 22 0 548 288 56 5 chr13 93330385 93330583 -8542586 - MIR SINE MIR -26 236 29 4123 67 30 24 chr13 93330687 93331227 -8541942 - L1PA8 LINE L1 0 6172 5630 731 324 59 17 chr13 93331721 93332129 -8541040 + L2 LINE L2 2423 2847 -467 185 302 129 55 chr13 93334435 93334637 -8538532 + L2 LINE L2 2174 2390 -924 287 25 25 0 chr13 93335241 93335281 -8537888 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 24 53 0 0 chr13 93335441 93335479 -8537690 + AT_rich Low_complexity Low_complexity 1 38 0 211 325 166 30 chr13 93335950 93336282 -8536887 - L3 LINE CR1 -91 1486 1110 * 214 274 24 36 chr13 93336277 93336361 -8536808 - L2 LINE L2 -1 3271 3189 220 262 16 16 chr13 93337778 93337839 -8535330 + MER5B DNA MER1_type 116 176 -2 807 303 84 34 chr13 93338337 93338412 -8534757 + L2 LINE L2 2638 2708 -605 2416 37 0 4 chr13 93338412 93338685 -8534484 - L1PA3 LINE L1 -3 6152 5881 807 303 84 34 chr13 93338685 93339234 -8533935 + L2 LINE L2 2708 3308 -5 217 353 173 17 chr13 93339271 93339444 -8533725 - MIR SINE MIR -61 201 2 248 258 0 0 chr13 93339685 93339747 -8533422 + A-rich Low_complexity Low_complexity 1 62 0 1835 154 7 4 chr13 93341741 93342055 -8531114 + AluSx SINE Alu 1 315 0 679 283 96 8 chr13 93342201 93342441 -8530728 - MIR SINE MIR 0 262 2 2380 117 19 35 chr13 93343117 93343486 -8529683 - THE1B LTR MaLR 0 364 2 4499 100 3 5 chr13 93343487 93344087 -8529082 - THE1B-int LTR MaLR 0 1580 982 1662 157 67 13 chr13 93344087 93344399 -8528770 - THE1B LTR MaLR -33 331 3 2358 161 49 7 chr13 93344528 93344938 -8528231 + MSTA LTR MaLR 1 427 -1 2328 113 0 0 chr13 93345467 93345778 -8527391 - AluSx SINE Alu -1 311 1 269 232 0 0 chr13 93346243 93346299 -8526870 - MIR SINE MIR -19 243 188 22 88 0 0 chr13 93348768 93348825 -8524344 + AT_rich Low_complexity Low_complexity 1 57 0 225 269 0 0 chr13 93349884 93349936 -8523233 - MER91B DNA MER1_type -117 73 22 716 227 0 15 chr13 93350551 93350683 -8522486 + FLAM_C SINE Alu 2 131 -2 831 159 38 6 chr13 93353087 93353244 -8519925 + MLT1D LTR MaLR 344 505 0 426 244 100 17 chr13 93353268 93353498 -8519671 - L1ME LINE L1 -634 5530 5282 531 274 109 53 chr13 93353718 93354298 -8518871 - L1ME LINE L1 -1052 5094 4483 41 36 0 0 chr13 93354443 93354498 -8518671 + AT_rich Low_complexity Low_complexity 1 55 0 346 330 35 18 chr13 93354866 93355089 -8518080 + L1MC/D LINE L1 5483 5708 -462 1956 180 2 84 chr13 93355296 93355747 -8517422 - MLT2D LTR ERVL 0 414 1 324 184 41 10 chr13 93355747 93355845 -8517324 + (TAGA)n Simple_repeat Simple_repeat 3 103 0 1654 169 149 6 chr13 93355847 93356196 -8516973 - MSTA LTR MaLR -2 426 28 5407 152 43 20 chr13 93356201 93357283 -8515886 - Tigger3b DNA MER2_type -122 1109 3 401 234 103 57 chr13 93357283 93357458 -8515711 - MIR SINE MIR -60 202 20 332 127 0 0 chr13 93357658 93357713 -8515456 + Tigger3b DNA MER2_type 1035 1089 -142 708 183 103 75 chr13 93357862 93358075 -8515094 - MER20 DNA MER1_type 0 219 1 247 340 130 43 chr13 93359011 93359387 -8513782 + L2 LINE L2 2569 2977 -337 252 219 47 0 chr13 93360044 93360108 -8513061 + (TCTG)n Simple_repeat Simple_repeat 1 67 0 401 130 39 0 chr13 93360125 93360202 -8512967 + CT-rich Low_complexity Low_complexity 1 80 0 1559 219 3 0 chr13 93360326 93360749 -8512420 - AluJb SINE Alu 0 424 1 1514 221 58 9 chr13 93360913 93361261 -8511908 - MLT1A1 LTR MaLR 0 365 1 250 272 25 25 chr13 93362294 93362375 -8510794 - MIR SINE MIR -149 113 33 389 302 59 24 chr13 93363702 93363871 -8509298 - MIR SINE MIR -52 210 36 327 228 13 0 chr13 93364882 93364961 -8508208 - MER81 DNA DNA -32 82 3 562 216 10 14 chr13 93366136 93366555 -8506614 + (TG)n Simple_repeat Simple_repeat 1 417 0 582 291 67 12 chr13 93367214 93367468 -8505701 - MLT1A1 LTR MaLR 0 467 200 12975 36 11 1 chr13 93367493 93369832 -8503337 + L1PA5 LINE L1 3794 6146 -8 26 30 0 0 chr13 93369832 93369865 -8503304 + AT_rich Low_complexity Low_complexity 1 33 0 793 179 29 63 chr13 93369878 93370085 -8503084 - MLT1A1 LTR MaLR -165 200 1 210 162 0 0 chr13 93370107 93370144 -8503025 + (TA)n Simple_repeat Simple_repeat 1 37 0 687 109 197 0 chr13 93370154 93370301 -8502868 - L1MA3 LINE L1 0 6305 6130 739 184 61 0 chr13 93370302 93370449 -8502720 - AluSg/x SINE Alu 0 312 157 1798 137 12 6 chr13 93370449 93370778 -8502391 - L1MA3 LINE L1 -156 6149 5819 1270 137 14 0 chr13 93370807 93371018 -8502151 - MLT2C1 LTR ERVL -183 214 1 654 169 133 42 chr13 93371026 93371192 -8501977 - MER20 DNA MER1_type -37 182 2 188 67 33 0 chr13 93372219 93372249 -8500920 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 234 81 0 0 chr13 93372944 93372981 -8500188 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 201 284 57 11 chr13 93373182 93373270 -8499899 - MIR SINE MIR -54 208 117 390 320 0 8 chr13 93373854 93373979 -8499190 + L2 LINE L2 3190 3313 0 193 331 122 50 chr13 93375010 93375191 -8497978 + L3b LINE CR1 1259 1452 -131 202 232 36 149 chr13 93376055 93376223 -8496946 - MIR3 SINE MIR -30 178 30 180 0 0 0 chr13 93376893 93376913 -8496256 + (A)n Simple_repeat Simple_repeat 1 20 0 959 204 24 0 chr13 93377023 93377229 -8495940 - L1ME1 LINE L1 -65 6101 5891 330 229 21 34 chr13 93377394 93377631 -8495538 + GA-rich Low_complexity Low_complexity 1 234 0 190 261 0 130 chr13 93377957 93378049 -8495120 + L2 LINE L2 3193 3272 0 216 0 0 0 chr13 93378698 93378722 -8494447 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 1303 243 34 36 chr13 93379852 93380268 -8492901 + MLT1C LTR MaLR 53 467 0 1124 254 92 23 chr13 93383372 93383529 -8489640 + MLT1C LTR MaLR 1 146 -321 13104 34 6 1 chr13 93383529 93385879 -8487290 - L1PA5 LINE L1 -1 6153 3794 1124 254 92 23 chr13 93385879 93386158 -8487011 + MLT1C LTR MaLR 146 467 0 201 368 39 39 chr13 93386331 93386486 -8486683 + L2 LINE L2 2720 2874 -440 2181 129 6 6 chr13 93386486 93386831 -8486338 - AluSx SINE Alu 0 345 1 396 0 0 0 chr13 93387452 93387496 -8485673 + (TG)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr13 93390498 93390536 -8482633 + (TA)n Simple_repeat Simple_repeat 2 39 0 201 405 8 38 chr13 93391804 93391935 -8481234 + MIR SINE MIR 57 183 -79 424 311 79 16 chr13 93392619 93392873 -8480296 + L1ME LINE L1 5458 5727 -394 5084 169 35 15 chr13 93393026 93393335 -8479834 + L1MA4 LINE L1 4976 5277 -1023 2186 138 28 6 chr13 93393335 93393691 -8479478 + THE1B LTR MaLR 1 364 0 5084 169 35 15 chr13 93393691 93394192 -8478977 + L1MA4 LINE L1 5277 5766 -534 216 0 0 0 chr13 93394192 93394216 -8478953 + (CA)n Simple_repeat Simple_repeat 1 24 0 5084 169 35 15 chr13 93394216 93394686 -8478483 + L1MA4 LINE L1 5766 6287 -13 27 61 0 15 chr13 93394868 93394904 -8478265 + AT_rich Low_complexity Low_complexity 1 37 -28 2076 117 0 0 chr13 93394904 93395187 -8477982 + AluSg SINE Alu 1 283 -27 27 61 0 15 chr13 93395187 93395216 -8477953 + AT_rich Low_complexity Low_complexity 37 65 0 277 345 77 69 chr13 93397453 93397919 -8475250 + L2 LINE L2 1991 2460 -854 195 42 0 0 chr13 93398114 93398138 -8475031 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 197 350 51 34 chr13 93398389 93398506 -8474663 + MIR SINE MIR 20 138 -124 269 250 21 62 chr13 93398687 93398783 -8474386 + MER5A DNA MER1_type 98 189 0 227 232 18 18 chr13 93398916 93398972 -8474197 - L2 LINE L2 -43 3229 3174 414 318 133 21 chr13 93399465 93399795 -8473374 + L1ME4a LINE L1 5516 5882 -239 198 71 0 0 chr13 93399849 93399877 -8473292 + (TG)n Simple_repeat Simple_repeat 1 28 0 283 284 238 14 chr13 93403422 93403588 -8469581 + MIR SINE MIR 30 230 -32 1452 152 123 15 chr13 93404297 93404566 -8468603 + AluSg SINE Alu 1 298 -12 21 95 0 0 chr13 93405108 93405171 -8467998 + AT_rich Low_complexity Low_complexity 1 63 0 1869 121 21 31 chr13 93405318 93405439 -8467730 + AluSx SINE Alu 1 122 -190 186 43 0 0 chr13 93405439 93405462 -8467707 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1869 121 21 31 chr13 93405462 93405649 -8467520 + AluSx SINE Alu 122 312 0 636 176 0 0 chr13 93406682 93406784 -8466385 - AluJ/FLAM SINE Alu -210 102 1 3552 92 10 0 chr13 93406876 93407376 -8465793 + L1PA10 LINE L1 5653 6157 -11 264 247 13 13 chr13 93407409 93407486 -8465683 - LTR67 LTR ERVL -84 473 397 1803 158 55 17 chr13 93407626 93407987 -8465182 + THE1C LTR MaLR 1 375 0 2215 147 19 11 chr13 93408203 93408564 -8464605 - THE1B LTR MaLR 0 364 1 281 349 63 38 chr13 93409232 93409470 -8463699 + L2 LINE L2 2843 3086 -227 2538 44 14 0 chr13 93410167 93410462 -8462707 + AluY SINE Alu 1 299 -12 22 0 0 0 chr13 93411211 93411233 -8461936 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr13 93411242 93411270 -8461899 + AT_rich Low_complexity Low_complexity 1 28 0 2583 43 0 0 chr13 93411666 93411971 -8461198 + AluY SINE Alu 1 305 -6 23 0 0 0 chr13 93412860 93412883 -8460286 + AT_rich Low_complexity Low_complexity 1 23 0 2115 89 4 7 chr13 93415412 93415733 -8457436 - AluSg SINE Alu 0 320 1 186 354 38 0 chr13 93415808 93415887 -8457282 + MIR SINE MIR 47 128 -80 1938 118 63 38 chr13 93416393 93416759 -8456410 + THE1C LTR MaLR 1 375 0 1405 196 62 0 chr13 93416840 93417146 -8456023 + MLT1A1 LTR MaLR 1 325 -40 769 345 112 12 chr13 93418227 93418743 -8454426 - L3 LINE CR1 -536 1041 474 587 257 25 25 chr13 93418983 93419185 -8453984 - MER63A DNA MER1_type -2 208 7 271 343 34 75 chr13 93419370 93419662 -8453507 - L2 LINE L2 -1018 2296 2017 31 44 0 0 chr13 93420358 93420403 -8452766 + AT_rich Low_complexity Low_complexity 1 45 0 206 54 0 54 chr13 93420730 93420767 -8452402 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 183 80 0 0 chr13 93421321 93421346 -8451823 + (CA)n Simple_repeat Simple_repeat 2 26 0 403 315 22 43 chr13 93422234 93422305 -8450864 + MIR SINE MIR 50 121 -141 2664 14 0 0 chr13 93422305 93422601 -8450568 - AluY SINE Alu -15 296 1 403 315 22 43 chr13 93422601 93422713 -8450456 + MIR SINE MIR 121 229 -33 241 253 53 42 chr13 93422782 93422846 -8450323 - MIR SINE MIR -73 189 122 2002 89 96 0 chr13 93422846 93423117 -8450052 + AluSq SINE Alu 7 303 -10 241 253 53 42 chr13 93423117 93423147 -8450022 - MIR SINE MIR -140 122 94 232 314 40 48 chr13 93424791 93424915 -8448254 + L2 LINE L2 3158 3280 -33 493 309 29 0 chr13 93424965 93425101 -8448068 - L2 LINE L2 0 3313 3174 456 195 0 23 chr13 93425298 93425385 -8447784 + MER5A DNA MER1_type 103 187 -2 707 277 11 6 chr13 93425395 93425572 -8447597 - MER5B DNA MER1_type 0 178 1 469 267 87 12 chr13 93425964 93426136 -8447033 + MIR SINE MIR 60 244 -18 272 348 71 7 chr13 93426630 93426785 -8446384 + L2 LINE L2 3107 3271 -1 1646 178 34 7 chr13 93426883 93427175 -8445994 + AluJo SINE Alu 1 300 -12 204 237 288 17 chr13 93428418 93428456 -8444713 - MER5B DNA MER1_type -1 177 151 938 173 31 26 chr13 93428456 93428647 -8444522 + L1MC1 LINE L1 6141 6332 -1 204 237 288 17 chr13 93428647 93428726 -8444443 - MER5B DNA MER1_type -27 151 28 198 0 0 0 chr13 93429252 93429274 -8443895 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 186 143 0 0 chr13 93429565 93429593 -8443576 + L2 LINE L2 3277 3304 -9 306 0 0 0 chr13 93430279 93430313 -8442856 + (CA)n Simple_repeat Simple_repeat 2 35 0 1250 206 65 14 chr13 93430754 93431108 -8442061 + MER58D DNA MER1_type 9 380 -6 1872 136 42 45 chr13 93432113 93432495 -8440674 + MLT1B LTR MaLR 1 381 -9 249 420 9 0 chr13 93432747 93432859 -8440310 - MIR SINE MIR -58 150 38 24 0 0 0 chr13 93434201 93434225 -8438944 + AT_rich Low_complexity Low_complexity 1 24 0 2093 241 57 27 chr13 93434936 93435307 -8437862 + L1ME1 LINE L1 4985 5344 -822 2501 48 3 3 chr13 93435307 93435618 -8437551 + AluY SINE Alu 1 311 0 2093 241 57 27 chr13 93435618 93436210 -8436959 + L1ME1 LINE L1 5344 5981 -185 609 203 13 13 chr13 93436245 93436398 -8436771 + L1MA10 LINE L1 6180 6332 -2 526 288 229 0 chr13 93436401 93436672 -8436497 + L1MC4a LINE L1 5817 6149 -1659 1877 197 31 13 chr13 93436688 93436791 -8436378 + L1MB8 LINE L1 5719 5819 -359 2237 135 0 0 chr13 93436791 93437102 -8436067 + AluSx SINE Alu 2 312 0 1877 197 31 13 chr13 93437102 93437449 -8435720 + L1MB8 LINE L1 5819 6177 -1 21 36 0 0 chr13 93437502 93437530 -8435639 + AT_rich Low_complexity Low_complexity 1 28 0 1163 267 69 18 chr13 93439547 93440041 -8433128 - LTR40a LTR ERVL 0 519 1 2301 99 3 10 chr13 93440915 93441228 -8431941 - AluSp SINE Alu 0 313 3 1679 188 8 27 chr13 93442060 93442427 -8430742 + MER47A DNA MER2_type 7 366 0 185 239 109 0 chr13 93444674 93444720 -8428449 - MIR SINE MIR -15 247 197 2158 86 32 0 chr13 93445949 93446227 -8426942 + AluSx SINE Alu 1 287 -25 31 0 0 0 chr13 93446264 93446295 -8426874 + AT_rich Low_complexity Low_complexity 1 31 0 1978 83 15 4 chr13 93446827 93447091 -8426078 - AluY SINE Alu -4 307 41 356 265 194 5 chr13 93448170 93448366 -8424803 + L1ME LINE L1 2475 2707 -3439 410 288 116 48 chr13 93448421 93449181 -8423988 + L1ME LINE L1 2795 3662 -2484 2137 140 0 3 chr13 93449181 93449488 -8423681 - AluSx SINE Alu -6 306 1 410 288 116 48 chr13 93449488 93449811 -8423358 + L1ME LINE L1 3662 3962 -2184 1637 243 6 3 chr13 93450046 93450408 -8422761 - MLT1A1 LTR MaLR -2 363 1 479 273 78 7 chr13 93450411 93450692 -8422477 + L1ME LINE L1 5279 5581 -583 1482 112 48 0 chr13 93450719 93450925 -8422244 + AluSg/x SINE Alu 87 302 -8 491 188 42 0 chr13 93451280 93451376 -8421793 + MER5A DNA MER1_type 10 109 -80 212 370 65 0 chr13 93451528 93451636 -8421533 - L2 LINE L2 -3 3269 3155 453 66 0 0 chr13 93451636 93451650 -8421519 + (CA)n Simple_repeat Simple_repeat 1 75 0 453 66 0 0 chr13 93451650 93451711 -8421458 + (CA)n Simple_repeat Simple_repeat 2 62 0 1404 254 95 59 chr13 93452233 93452302 -8420867 - MER20B DNA MER1_type -55 728 663 2220 117 0 3 chr13 93452302 93452602 -8420567 + AluSq SINE Alu 1 299 -14 1404 254 95 59 chr13 93452602 93453228 -8419941 - MER20B DNA MER1_type -120 663 8 493 214 56 40 chr13 93453440 93453566 -8419603 - MER63 DNA MER1_type -76 760 7 300 27 0 0 chr13 93453810 93453847 -8419322 + (CA)n Simple_repeat Simple_repeat 2 38 0 317 307 55 31 chr13 93454483 93454610 -8418559 - MER5A DNA MER1_type -4 185 56 225 0 0 0 chr13 93454695 93454720 -8418449 + (A)n Simple_repeat Simple_repeat 1 25 0 3647 73 13 56 chr13 93454878 93455411 -8417758 + L1MA2 LINE L1 5795 6304 0 21 0 0 0 chr13 93456420 93456441 -8416728 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr13 93458138 93458168 -8415001 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 259 337 133 0 chr13 93458555 93458653 -8414516 + L2 LINE L2 3147 3257 -15 2536 31 0 0 chr13 93460236 93460523 -8412646 + AluY SINE Alu 1 287 -24 287 329 23 31 chr13 93460674 93460861 -8412308 - MIR SINE MIR -55 207 22 2105 126 3 19 chr13 93461772 93462089 -8411080 - AluSq SINE Alu -1 312 1 256 148 56 19 chr13 93462275 93462329 -8410840 + LTR49-int LTR ERV1 508 563 -5768 1287 209 45 14 chr13 93462410 93462697 -8410472 + MER63B DNA MER1_type 3 298 -138 656 192 0 15 chr13 93462699 93462829 -8410340 - AluJo SINE Alu -176 136 9 417 227 53 23 chr13 93462841 93462973 -8410196 + MER63B DNA MER1_type 290 425 -10 218 302 19 11 chr13 93462980 93463068 -8410101 + MIR SINE MIR 57 142 -66 2169 96 0 0 chr13 93463357 93463688 -8409481 - AluSg SINE Alu 0 331 1 198 349 80 50 chr13 93464221 93464275 -8408894 + L2 LINE L2 1597 1648 -1666 2243 106 0 10 chr13 93464275 93464578 -8408591 - AluSx SINE Alu -12 300 1 198 349 80 50 chr13 93464578 93464924 -8408245 + L2 LINE L2 1648 2009 -1305 241 345 85 33 chr13 93465130 93465495 -8407674 + L2 LINE L2 2397 2780 -534 264 174 0 15 chr13 93465879 93465948 -8407221 - L1MC4 LINE L1 -1340 6982 2006 1708 192 68 3 chr13 93467176 93467499 -8405670 - MER2 DNA MER2_type 0 344 1 188 321 125 64 chr13 93467697 93468008 -8405161 - L2 LINE L2 -337 2977 2648 233 311 57 9 chr13 93468107 93468213 -8404956 + MER5B DNA MER1_type 2 112 -66 256 200 0 36 chr13 93470963 93471018 -8402151 + L2 LINE L2 3219 3271 -1 2437 143 11 19 chr13 93471710 93472087 -8401082 - THE1C LTR MaLR -1 374 1 334 278 111 32 chr13 93472316 93472442 -8400727 + L2 LINE L2 3137 3272 0 226 340 80 28 chr13 93473378 93473628 -8399541 + L2 LINE L2 2545 2807 -507 369 209 43 52 chr13 93473634 93473749 -8399420 - L2 LINE L2 0 3313 3200 417 265 52 37 chr13 93474029 93474165 -8399004 + L2 LINE L2 3172 3309 -4 659 266 11 11 chr13 93474264 93474441 -8398728 - MIR SINE MIR 0 262 86 1234 196 35 107 chr13 93474509 93474912 -8398257 - MLT1A2 LTR MaLR 0 374 1 190 314 149 8 chr13 93474923 93475044 -8398125 - L2 LINE L2 -5 3308 3171 1437 149 56 0 chr13 93475181 93475396 -8397773 - MER30 DNA MER1_type 0 230 4 205 283 26 71 chr13 93475768 93476025 -8397144 - L2 LINE L2 -807 2507 2207 623 201 25 108 chr13 93477857 93478061 -8395108 + MER5A DNA MER1_type 1 187 -2 252 0 0 0 chr13 93479178 93479206 -8393963 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 214 328 0 3 chr13 93479457 93479531 -8393638 - MIR SINE MIR -69 139 78 821 287 62 38 chr13 93480063 93480484 -8392685 - MARNA DNA Mariner -113 473 43 337 61 18 18 chr13 93480798 93480857 -8392312 + MADE1 DNA Mariner 1 43 -37 22 56 0 0 chr13 93481555 93481591 -8391578 + AT_rich Low_complexity Low_complexity 1 36 0 336 83 0 0 chr13 93481608 93481656 -8391513 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr13 93482650 93482672 -8390497 + AT_rich Low_complexity Low_complexity 1 22 0 1719 141 58 14 chr13 93482763 93483039 -8390130 + AluSg SINE Alu 1 288 -22 228 102 20 0 chr13 93483633 93483682 -8389487 + Charlie5 DNA MER1_type 2440 2489 -123 3125 65 10 0 chr13 93485200 93485584 -8387585 - L1PA10 LINE L1 -4 6164 5777 724 74 0 28 chr13 93485584 93485692 -8387477 + L1P LINE L1 5305 5409 -752 317 290 47 0 chr13 93485849 93485956 -8387213 + L1MC4 LINE L1 7784 7895 -147 423 0 0 0 chr13 93486020 93486067 -8387102 + (TG)n Simple_repeat Simple_repeat 2 48 0 466 195 49 16 chr13 93486079 93486202 -8386967 + L1MC4 LINE L1 7916 8042 0 682 279 158 47 chr13 93486214 93486787 -8386382 + L2 LINE L2 2454 3149 -164 1090 246 14 5 chr13 93486787 93487007 -8386162 - MER58A DNA MER1_type -2 222 1 682 279 158 47 chr13 93487007 93487193 -8385976 + L2 LINE L2 3149 3313 0 1012 309 44 73 chr13 93487551 93488124 -8385045 + L3 LINE CR1 1019 1574 -3 2304 88 3 0 chr13 93488348 93488642 -8384527 + AluSp SINE Alu 1 295 -18 207 276 81 87 chr13 93488755 93488940 -8384229 + L2 LINE L2 1295 1478 -1836 277 281 123 0 chr13 93489142 93489288 -8383881 + L2 LINE L2 2686 2849 -465 791 200 29 12 chr13 93489318 93489488 -8383681 - MLT1D LTR MaLR 0 505 333 604 272 148 40 chr13 93489607 93489931 -8383238 - L2 LINE L2 -887 2427 2069 1915 286 86 9 chr13 93489934 93490807 -8382362 - L2 LINE L2 -1540 1774 835 24 0 0 0 chr13 93491103 93491127 -8382042 + AT_rich Low_complexity Low_complexity 1 24 0 1570 176 0 39 chr13 93491397 93491704 -8381465 - AluJb SINE Alu -16 296 2 402 335 58 83 chr13 93492907 93493004 -8380165 - L2 LINE L2 -3 3269 3171 640 220 203 0 chr13 93493004 93493186 -8379983 + MER20 DNA MER1_type 1 219 0 402 335 58 83 chr13 93493186 93493533 -8379636 - L2 LINE L2 -101 3171 2836 1812 185 0 3 chr13 93494178 93494491 -8378678 + AluJo SINE Alu 1 312 0 503 139 13 0 chr13 93496187 93496266 -8376903 - MER116 DNA Mariner 0 80 1 206 0 0 65 chr13 93496628 93496659 -8376510 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 852 159 74 99 chr13 93497831 93498114 -8375055 - MLT1D LTR MaLR -175 330 55 218 357 77 74 chr13 93498176 93498501 -8374668 + L2 LINE L2 2922 3247 -25 2267 128 23 47 chr13 93499722 93500106 -8373063 - THE1C LTR MaLR 0 375 1 537 316 40 22 chr13 93500242 93500470 -8372699 - L3 LINE CR1 -718 859 628 2621 43 0 3 chr13 93500638 93500940 -8372229 - AluY SINE Alu -10 301 1 294 298 79 0 chr13 93501601 93501715 -8371454 - L3b LINE CR1 -117 1466 1344 190 260 20 0 chr13 93501724 93501774 -8371395 + L3b LINE CR1 1429 1479 -104 1911 181 105 13 chr13 93502856 93503230 -8369939 + MLT1D LTR MaLR 6 431 -74 2598 87 31 11 chr13 93503230 93503587 -8369582 + THE1B LTR MaLR 1 364 0 1911 181 105 13 chr13 93503587 93503670 -8369499 + MLT1D LTR MaLR 431 505 0 589 259 61 0 chr13 93504079 93504226 -8368943 + MER58A DNA MER1_type 2 157 0 406 243 0 0 chr13 93504230 93504333 -8368836 + MER58A DNA MER1_type 121 223 -1 330 267 122 58 chr13 93504340 93504512 -8368657 + MIR SINE MIR 23 205 -57 209 121 0 0 chr13 93504662 93504695 -8368474 + L2 LINE L2 3277 3309 -4 262 181 14 111 chr13 93505063 93505135 -8368034 - Tigger5 DNA MER2_type -1 2322 2258 303 242 15 0 chr13 93505141 93505207 -8367962 + Tigger5 DNA MER2_type 2250 2316 -7 361 174 0 14 chr13 93505209 93505278 -8367891 - Tigger5 DNA MER2_type -2244 79 12 291 346 69 30 chr13 93505579 93505770 -8367399 + MIR SINE MIR 30 228 -34 8122 123 15 20 chr13 93505854 93507157 -8366012 - HSMAR2 DNA Mariner -2 1300 4 551 252 5 29 chr13 93507258 93507464 -8365705 + L1ME1 LINE L1 5694 5894 -272 1512 211 20 22 chr13 93507470 93507826 -8365343 + MLT2D LTR ERVL 1 355 -59 363 281 0 0 chr13 93507849 93507938 -8365231 - L1MC4 LINE L1 -1339 6703 6615 343 300 0 0 chr13 93507865 93507955 -8365214 + L1MC4 LINE L1 6614 6703 -1339 * 489 234 59 53 chr13 93508010 93508254 -8364915 + L1ME1 LINE L1 5904 6162 -4 328 325 93 32 chr13 93509223 93509469 -8363700 + MIR SINE MIR 2 262 0 1940 98 4 0 chr13 93509577 93509823 -8363346 - AluSq SINE Alu -66 247 1 1163 234 5 93 chr13 93509844 93510242 -8362927 - MLT1A1 LTR MaLR -2 363 1 1908 179 0 3 chr13 93510370 93510683 -8362486 + AluSx SINE Alu 1 312 0 1245 176 154 73 chr13 93511434 93511764 -8361405 + MLT1A1 LTR MaLR 9 365 0 229 241 0 17 chr13 93511823 93511881 -8361288 + L2 LINE L2 3257 3313 0 207 0 0 0 chr13 93513172 93513195 -8359974 + (A)n Simple_repeat Simple_repeat 1 23 0 1928 202 46 52 chr13 93514804 93515435 -8357734 + LTR29 LTR ERV1 1 650 -3 798 201 19 0 chr13 93515905 93516064 -8357105 - MER45A DNA AcHobo -2 176 15 1037 218 41 20 chr13 93516267 93516560 -8356609 - MER39 LTR ERV1 0 707 409 1916 141 68 44 chr13 93516560 93516972 -8356197 - MSTA LTR MaLR 0 428 7 251 202 36 60 chr13 93516973 93517057 -8356112 - MER39 LTR ERV1 -289 418 337 294 188 43 14 chr13 93517629 93517698 -8355471 + MLT1K LTR MaLR 518 588 0 1069 145 121 43 chr13 93517795 93518002 -8355167 + AluJb SINE Alu 87 309 -3 204 247 14 14 chr13 93519183 93519256 -8353913 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 1833 147 29 11 chr13 93519597 93519901 -8353268 + AluSx SINE Alu 1 309 0 198 241 26 17 chr13 93520008 93520093 -8353076 + L2 LINE L2 2875 2959 -313 796 212 55 25 chr13 93520093 93520396 -8352773 - MER58B DNA MER1_type 0 341 1 376 312 139 40 chr13 93520864 93521129 -8352040 - L2 LINE L2 -4 3268 3031 180 0 0 0 chr13 93521129 93521149 -8352020 + (GA)n Simple_repeat Simple_repeat 2 21 0 2069 117 80 11 chr13 93521154 93521505 -8351664 + THE1C LTR MaLR 1 375 0 376 312 139 40 chr13 93521505 93521557 -8351612 - L2 LINE L2 -244 3028 2913 1836 311 69 33 chr13 93521914 93523077 -8350092 - L2 LINE L2 -1 3312 2110 228 135 0 0 chr13 93523988 93524025 -8349144 + (T)n Simple_repeat Simple_repeat 1 37 0 615 111 0 0 chr13 93524747 93524837 -8348332 - 5S rRNA rRNA -31 90 1 193 354 0 0 chr13 93527151 93527216 -8345953 + MIR SINE MIR 88 152 -56 180 0 0 0 chr13 93527270 93527290 -8345879 + (T)n Simple_repeat Simple_repeat 1 20 0 270 303 25 8 chr13 93527551 93527703 -8345466 + L1MC/D LINE L1 5467 5623 -547 2235 85 0 0 chr13 93527866 93528182 -8344987 + AluY SINE Alu 1 316 0 205 167 0 0 chr13 93528741 93528777 -8344392 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr13 93530917 93530938 -8342231 + (A)n Simple_repeat Simple_repeat 1 21 0 370 298 74 55 chr13 93532234 93532785 -8340384 + L1MC/D LINE L1 4906 5470 -747 6586 67 39 0 chr13 93533253 93534861 -8338308 - L1PA7 LINE L1 0 6154 4513 3860 95 0 2 chr13 93534861 93535429 -8337740 + L1P LINE L1 1691 2257 -3889 21 0 0 0 chr13 93535434 93535455 -8337714 + AT_rich Low_complexity Low_complexity 1 21 0 663 304 91 0 chr13 93535584 93535814 -8337355 - MIR SINE MIR 0 262 12 263 336 175 20 chr13 93536443 93537133 -8336036 + L2 LINE L2 1887 2683 -631 360 319 66 81 chr13 93537174 93537641 -8335528 + L2 LINE L2 2804 3263 -9 394 194 21 14 chr13 93538336 93538480 -8334689 + (TA)n Simple_repeat Simple_repeat 1 145 0 207 0 0 0 chr13 93538759 93538782 -8334387 + (A)n Simple_repeat Simple_repeat 1 23 0 316 317 89 11 chr13 93539371 93539551 -8333618 - MIR SINE MIR -24 238 45 347 283 76 123 chr13 93539903 93540285 -8332884 - L2 LINE L2 0 3272 2909 2066 141 0 0 chr13 93540957 93541254 -8331915 + AluSx SINE Alu 4 300 -12 21 0 0 0 chr13 93542190 93542211 -8330958 + AT_rich Low_complexity Low_complexity 1 21 0 242 297 69 0 chr13 93543993 93544094 -8329075 - L2 LINE L2 -15 3257 3150 288 50 33 50 chr13 93544185 93544245 -8328924 + (TAAAAA)n Simple_repeat Simple_repeat 2 60 0 724 248 69 60 chr13 93544340 93544659 -8328510 + L2 LINE L2 2937 3258 -55 293 303 51 69 chr13 93545123 93545298 -8327871 + MIR SINE MIR 51 222 -40 214 325 65 8 chr13 93545498 93545621 -8327548 - MIR SINE MIR -49 213 84 212 284 34 45 chr13 93545682 93545770 -8327399 - L2 LINE L2 0 3272 3186 309 310 46 41 chr13 93546211 93546408 -8326761 - L1ME4a LINE L1 -4 6117 5920 287 234 84 19 chr13 93546590 93546697 -8326472 - L1ME4a LINE L1 -454 5667 5554 383 314 147 47 chr13 93547392 93547793 -8325376 + L1MC4a LINE L1 4562 5002 -1144 334 306 63 55 chr13 93547959 93548315 -8324854 + MLT1G1 LTR MaLR 2 412 -183 282 179 147 42 chr13 93548307 93548402 -8324767 + MLT1F LTR MaLR 302 406 -136 * 291 271 55 87 chr13 93549629 93549847 -8323322 + MLT1G3-int LTR MaLR 1028 1238 -133 507 260 106 28 chr13 93550040 93550515 -8322654 + MLT1G3 LTR MaLR 28 540 -2 228 35 0 0 chr13 93550518 93550547 -8322622 + (CA)n Simple_repeat Simple_repeat 2 30 0 357 263 88 95 chr13 93550615 93550670 -8322499 + L1MC4a LINE L1 5258 5312 -809 1882 107 67 27 chr13 93550670 93551005 -8322164 + AluSx SINE Alu 1 312 0 357 263 88 95 chr13 93551005 93551580 -8321589 + L1MC4a LINE L1 5312 5741 -380 180 0 0 0 chr13 93551817 93551837 -8321332 + (CA)n Simple_repeat Simple_repeat 1 20 0 507 246 15 4 chr13 93554192 93554377 -8318792 + MLT1K LTR MaLR 126 242 -346 418 308 34 0 chr13 93554347 93554464 -8318705 + MLT1K LTR MaLR 144 264 -324 * 246 288 0 0 chr13 93554516 93554575 -8318594 + MLT1K LTR MaLR 525 583 -5 2132 126 33 36 chr13 93555118 93555483 -8317686 + THE1B LTR MaLR 1 364 0 23 33 0 0 chr13 93555504 93555534 -8317635 + AT_rich Low_complexity Low_complexity 1 30 0 268 368 156 22 chr13 93555730 93556358 -8316811 - L2 LINE L2 -428 2886 2175 749 299 9 26 chr13 93556428 93556659 -8316510 - MIR SINE MIR -35 227 1 22 35 0 0 chr13 93557769 93557798 -8315371 + AT_rich Low_complexity Low_complexity 1 29 0 2375 157 25 39 chr13 93557799 93558231 -8314938 + MSTB LTR MaLR 1 426 0 351 279 8 31 chr13 93558602 93558731 -8314438 + MLT1L LTR MaLR 102 227 -388 5507 84 9 0 chr13 93558778 93559537 -8313632 + L1PB1 LINE L1 5386 6151 0 26 50 0 0 chr13 93559537 93559577 -8313592 + AT_rich Low_complexity Low_complexity 1 40 0 3803 185 24 60 chr13 93561609 93562595 -8310574 + L1MA5 LINE L1 1377 2327 -4462 1886 76 8 0 chr13 93562624 93562873 -8310296 + L1PA7 LINE L1 5900 6150 -4 7629 190 61 12 chr13 93562886 93565926 -8307243 + L1MA5 LINE L1 3713 6942 0 1981 159 3 0 chr13 93566161 93566456 -8306713 - AluSx SINE Alu -16 296 1 2597 256 42 21 chr13 93568112 93568880 -8304289 - MER21B LTR ERV1 -61 802 19 382 204 0 86 chr13 93568887 93568980 -8304189 - MER21B LTR ERV1 -767 96 12 277 234 104 0 chr13 93569273 93569350 -8303819 - L1ME3 LINE L1 -1 6161 6077 721 123 8 8 chr13 93569470 93569600 -8303569 + (TTCC)n Simple_repeat Simple_repeat 3 132 0 1006 206 211 20 chr13 93569883 93570290 -8302879 + Charlie4a DNA MER1_type 24 508 0 200 327 109 9 chr13 93570295 93570405 -8302764 - L3 LINE CR1 -120 1457 1337 2240 93 20 0 chr13 93570878 93571180 -8301989 + AluSp SINE Alu 4 311 -2 2112 112 0 7 chr13 93572270 93572606 -8300563 + AluSx SINE Alu 2 335 0 5401 151 15 14 chr13 93573024 93574649 -8298520 - L1PB3 LINE L1 -1 6153 4529 445 200 96 26 chr13 93574913 93575028 -8298141 + MLT1B LTR MaLR 3 125 -265 1899 175 55 38 chr13 93575054 93575476 -8297693 - MSTB1 LTR MaLR -3 429 1 850 211 0 39 chr13 93575638 93575818 -8297351 - AluJo SINE Alu -16 296 124 182 128 26 0 chr13 93579255 93579294 -8293875 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 243 0 0 0 chr13 93579530 93579557 -8293612 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 351 0 0 0 chr13 93579556 93579595 -8293574 + (GA)n Simple_repeat Simple_repeat 2 40 0 185 254 48 32 chr13 93579815 93579878 -8293291 - L3b LINE CR1 -131 1452 1389 454 245 13 0 chr13 93580308 93580459 -8292710 + GA-rich Low_complexity Low_complexity 3 155 0 294 67 0 44 chr13 93580465 93580510 -8292659 - MADE1 DNA Mariner -37 43 1 42912 32 24 1 chr13 93582888 93588903 -8284266 + L1PA2 LINE L1 1 6155 0 207 0 0 0 chr13 93589666 93589689 -8283480 + (A)n Simple_repeat Simple_repeat 1 23 0 203 289 67 58 chr13 93590291 93590395 -8282774 - MIR SINE MIR -71 191 87 23 33 0 0 chr13 93590807 93590837 -8282332 + AT_rich Low_complexity Low_complexity 1 30 0 252 0 0 0 chr13 93591015 93591043 -8282126 + (A)n Simple_repeat Simple_repeat 1 28 0 353 352 15 30 chr13 93592066 93592265 -8280904 + L2 LINE L2 2172 2367 -947 896 225 21 0 chr13 93593069 93593256 -8279913 + MIR SINE MIR 18 208 -54 261 0 0 0 chr13 93593895 93593924 -8279245 + (CA)n Simple_repeat Simple_repeat 1 29 0 290 81 0 0 chr13 93594920 93594957 -8278212 + THE1B LTR MaLR 150 186 -178 29 0 0 0 chr13 93596268 93596297 -8276872 + AT_rich Low_complexity Low_complexity 1 29 0 226 291 122 43 chr13 93596484 93596738 -8276431 - L1MC/D LINE L1 -1965 5843 5570 1953 123 3 55 chr13 93596989 93597315 -8275854 + AluSx SINE Alu 1 309 -3 567 293 44 31 chr13 93598684 93598909 -8274260 - MIR SINE MIR -23 239 12 184 309 147 0 chr13 93599099 93599167 -8274002 + MIR3 SINE MIR 108 185 -23 253 255 128 10 chr13 93599813 93599915 -8273254 + L2 LINE L2 3158 3271 -1 23 0 0 0 chr13 93600128 93600151 -8273018 + AT_rich Low_complexity Low_complexity 1 23 0 279 294 12 0 chr13 93600309 93600394 -8272775 + L2 LINE L2 3228 3313 0 2530 60 0 0 chr13 93600587 93600889 -8272280 + AluY SINE Alu 1 302 -9 340 231 179 0 chr13 93600909 93601026 -8272143 - L2 LINE L2 -896 2418 2281 220 271 0 0 chr13 93601231 93601279 -8271890 + (CA)n Simple_repeat Simple_repeat 1 48 0 27 0 0 0 chr13 93602414 93602441 -8270728 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr13 93603101 93603126 -8270043 + AT_rich Low_complexity Low_complexity 1 25 0 382 313 49 12 chr13 93603132 93603295 -8269874 + MIR3 SINE MIR 36 204 -4 212 0 36 0 chr13 93603662 93603690 -8269479 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2348 94 7 0 chr13 93605617 93605924 -8267245 - AluSc SINE Alu 0 309 1 270 323 21 21 chr13 93607299 93607395 -8265774 - L2 LINE L2 -17 3255 3160 272 329 70 35 chr13 93607426 93607569 -8265600 + MIR SINE MIR 20 167 -95 21 0 0 0 chr13 93607892 93607913 -8265256 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr13 93608658 93608687 -8264482 + (TG)n Simple_repeat Simple_repeat 2 30 0 495 143 0 0 chr13 93609142 93609219 -8263950 + AluSg/x SINE Alu 210 286 -26 528 16 0 0 chr13 93609219 93609280 -8263889 + (TA)n Simple_repeat Simple_repeat 1 61 0 200 325 12 0 chr13 93609671 93609754 -8263415 + MIR SINE MIR 70 153 -109 758 282 40 50 chr13 93609780 93610177 -8262992 + MLT1I LTR MaLR 17 409 0 1040 163 5 5 chr13 93610211 93610401 -8262768 + L1PA14 LINE L1 5958 6147 -14 4516 127 25 35 chr13 93612513 93613330 -8259839 + L1MA5A LINE L1 5480 6287 -10 539 227 32 5 chr13 93613563 93613743 -8259426 + MLT1H1 LTR MaLR 7 237 -312 423 128 0 0 chr13 93615038 93615124 -8258045 + (TA)n Simple_repeat Simple_repeat 2 87 0 1933 148 3 0 chr13 93615142 93615425 -8257744 - AluSx SINE Alu -28 284 1 904 145 0 0 chr13 93617666 93617797 -8255372 + FLAM_C SINE Alu 1 131 -12 2577 129 11 32 chr13 93617926 93618369 -8254800 + MER57B LTR ERV1 1 434 0 626 293 165 8 chr13 93618440 93618809 -8254360 + Zaphod DNA AcHobo 1 427 -3604 366 196 70 30 chr13 93619027 93619226 -8253943 + Zaphod DNA AcHobo 764 970 -3061 790 258 132 16 chr13 93619238 93619618 -8253551 + Zaphod DNA AcHobo 3595 4018 -13 351 228 39 24 chr13 93619739 93619866 -8253303 - Charlie2a DNA MER1_type -18 2844 2716 243 313 19 25 chr13 93619869 93620029 -8253140 - Charlie2a DNA MER1_type -1202 1660 1502 1869 157 3 17 chr13 93620032 93620332 -8252837 + AluJb SINE Alu 1 296 -16 476 16 16 0 chr13 93620409 93620470 -8252699 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 373 281 0 0 chr13 93620470 93620584 -8252585 - Charlie2b DNA MER1_type -2113 669 556 267 264 56 16 chr13 93620699 93620824 -8252345 - Charlie2b DNA MER1_type -2574 208 79 1991 114 3 30 chr13 93622097 93622396 -8250773 - AluSx SINE Alu -21 291 1 390 291 176 9 chr13 93622895 93623105 -8250064 + MIR SINE MIR 8 252 -10 379 62 250 0 chr13 93623218 93623282 -8249887 + MADE1 DNA Mariner 1 80 0 226 88 0 0 chr13 93624251 93624285 -8248884 + HSMAR1 DNA Mariner 1 34 -1253 531 294 158 26 chr13 93624810 93625235 -8247934 - L3 LINE CR1 -14 1563 1083 534 294 86 37 chr13 93625273 93625518 -8247651 + MIR SINE MIR 6 262 0 258 275 0 0 chr13 93627062 93627131 -8246038 + MIR SINE MIR 136 204 -58 318 291 86 17 chr13 93627393 93627510 -8245659 + MIR SINE MIR 29 153 -109 265 201 71 136 chr13 93628521 93628690 -8244479 - LTR28 LTR ERV1 -15 1005 848 233 111 0 0 chr13 93628717 93628753 -8244416 - MER52C LTR ERV1 -64 1214 1179 * 965 249 131 8 chr13 93628722 93629137 -8244032 - LTR1B LTR ERV1 -333 493 28 665 223 148 68 chr13 93629213 93629640 -8243529 + MLT1C LTR MaLR 6 466 -1 254 364 53 20 chr13 93630560 93630711 -8242458 - L1MC/D LINE L1 -2165 5643 5488 197 143 0 20 chr13 93630760 93630809 -8242360 + (TTTTTG)n Simple_repeat Simple_repeat 6 53 0 200 294 98 93 chr13 93631519 93631937 -8241232 + L2 LINE L2 2845 3264 -8 283 338 120 73 chr13 93632738 93633179 -8239990 + L2 LINE L2 2811 3272 0 24 32 0 0 chr13 93634709 93634740 -8238429 + AT_rich Low_complexity Low_complexity 1 31 0 1567 160 19 4 chr13 93634895 93635157 -8238012 + AluJo SINE Alu 21 286 -26 195 42 0 0 chr13 93635167 93635191 -8237978 + (CAATA)n Simple_repeat Simple_repeat 2 25 0 225 0 0 0 chr13 93636201 93636226 -8236943 + (A)n Simple_repeat Simple_repeat 1 25 0 641 242 91 2 chr13 93637855 93638025 -8235144 + MER5A DNA MER1_type 1 176 -2 3636 170 3 23 chr13 93638125 93638404 -8234765 + L1MA7 LINE L1 5559 5842 -449 2367 67 3 0 chr13 93638404 93638703 -8234466 + AluY SINE Alu 1 300 -11 3636 170 3 23 chr13 93638703 93639171 -8233998 + L1MA7 LINE L1 5842 6291 0 481 313 103 65 chr13 93639553 93639952 -8233217 + L2 LINE L2 2900 3313 0 468 316 118 17 chr13 93640598 93640835 -8232334 + MIR SINE MIR 2 262 0 1764 160 17 0 chr13 93641314 93641607 -8231562 + AluSx SINE Alu 1 298 -14 2410 90 0 0 chr13 93642034 93642344 -8230825 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr13 93643126 93643154 -8230015 + AT_rich Low_complexity Low_complexity 1 28 0 190 300 0 33 chr13 93643590 93643650 -8229519 + L3 LINE CR1 1518 1575 -2 1234 123 0 9 chr13 93644518 93644729 -8228440 + L1 LINE L1 2279 2487 -3659 14083 142 14 6 chr13 93650296 93651134 -8222035 + Tigger1 DNA MER2_type 8 838 -1580 2152 111 3 3 chr13 93651134 93651262 -8221907 + AluSq SINE Alu 1 128 -185 288 70 0 0 chr13 93651262 93651305 -8221864 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2152 111 3 3 chr13 93651305 93651473 -8221696 + AluSq SINE Alu 127 297 -16 14083 142 14 6 chr13 93651473 93653024 -8220145 + Tigger1 DNA MER2_type 838 2417 -1 362 284 104 0 chr13 93653025 93653159 -8220010 - MIR SINE MIR -64 198 51 190 319 59 76 chr13 93653558 93653677 -8219492 - L2 LINE L2 -24 3248 3132 441 274 86 11 chr13 93654165 93654351 -8218818 + MIR SINE MIR 20 219 -43 787 194 20 151 chr13 93654352 93654810 -8218359 - MLT1D LTR MaLR -107 398 1 291 28 0 0 chr13 93654944 93654980 -8218189 + (CA)n Simple_repeat Simple_repeat 2 37 0 559 146 49 98 chr13 93655766 93655930 -8217239 - MER106B DNA MER1_type -2 1057 902 216 35 35 0 chr13 93656035 93656064 -8217105 - MIR SINE MIR -14 248 219 553 291 46 46 chr13 93657496 93657733 -8215436 + MIR SINE MIR 21 257 -5 649 164 0 49 chr13 93658311 93658433 -8214736 + FLAM_C SINE Alu 3 118 -25 241 296 45 34 chr13 93658784 93658872 -8214297 - L2 LINE L2 -33 3280 3192 2094 176 2 42 chr13 93658884 93659315 -8213854 - MLT2D LTR ERVL 0 414 1 233 321 105 36 chr13 93659467 93659744 -8213425 - L2 LINE L2 -417 2897 2602 417 252 0 0 chr13 93659800 93659903 -8213266 - MER58A DNA MER1_type -16 208 106 1578 147 9 0 chr13 93659903 93660135 -8213034 + AluSq SINE Alu 1 234 -79 820 124 6 30 chr13 93660156 93660325 -8212844 + (GGAA)n Simple_repeat Simple_repeat 4 168 0 186 43 0 0 chr13 93660354 93660377 -8212792 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 432 248 0 58 chr13 93660377 93660491 -8212678 - MER58A DNA MER1_type -227 114 6 399 333 113 28 chr13 93660562 93660953 -8212216 - L2 LINE L2 -909 2405 1982 35 41 0 0 chr13 93661351 93661400 -8211769 + AT_rich Low_complexity Low_complexity 1 49 0 28 48 0 0 chr13 93662243 93662285 -8210884 + AT_rich Low_complexity Low_complexity 1 42 0 223 85 43 0 chr13 93663032 93663079 -8210090 + A-rich Low_complexity Low_complexity 2 50 0 851 229 6 0 chr13 93663207 93663377 -8209792 - FAM SINE Alu -4 171 1 189 171 0 0 chr13 93664667 93664702 -8208467 + (TG)n Simple_repeat Simple_repeat 2 36 0 473 314 82 29 chr13 93666259 93666466 -8206703 + MIR SINE MIR 21 238 -24 378 267 57 0 chr13 93666493 93666593 -8206576 + Charlie1a DNA MER1_type 14 119 -1336 1864 133 153 6 chr13 93666593 93666953 -8206216 + MSTA LTR MaLR 1 413 -15 1239 231 12 38 chr13 93666957 93667277 -8205892 + Charlie1a DNA MER1_type 115 426 -1029 1480 181 71 15 chr13 93667325 93667718 -8205451 + Charlie1a DNA MER1_type 850 1264 -191 1694 205 29 5 chr13 93668137 93668518 -8204651 + MLT1B LTR MaLR 1 390 0 1189 272 67 76 chr13 93669344 93669683 -8203486 + L2 LINE L2 2363 2704 -609 3038 130 26 36 chr13 93669683 93670215 -8202954 + MER1A DNA MER1_type 1 527 0 1189 272 67 76 chr13 93670215 93670831 -8202338 + L2 LINE L2 2704 3306 -7 2008 146 0 13 chr13 93670832 93671148 -8202021 + AluJb SINE Alu 1 312 0 1694 42 5 9 chr13 93671807 93672023 -8201146 - L1PA5 LINE L1 0 6154 5940 1164 196 3 78 chr13 93672529 93672835 -8200334 + MLT1B LTR MaLR 1 283 -107 677 237 11 17 chr13 93672841 93673018 -8200151 + L1PB4 LINE L1 5980 6155 -1 745 131 41 0 chr13 93673018 93673140 -8200029 + MLT1B LTR MaLR 260 386 -4 1375 259 46 67 chr13 93673154 93674143 -8199026 + L1MEc LINE L1 1453 2383 -3832 557 233 56 0 chr13 93674247 93674427 -8198742 + L1ME2 LINE L1 5974 6163 -1 583 237 78 42 chr13 93674440 93674798 -8198371 + L1MC5 LINE L1 7519 7889 -72 282 309 61 13 chr13 93675658 93675888 -8197281 + L1MC5 LINE L1 7258 7498 -463 1334 164 55 15 chr13 93676163 93676604 -8196565 - MER51A LTR ERV1 -16 618 1 752 215 81 103 chr13 93676625 93676912 -8196257 + MLT1D LTR MaLR 1 274 -231 9791 56 6 4 chr13 93676912 93678952 -8194217 + L1PA6 LINE L1 4107 6154 0 752 215 81 103 chr13 93678952 93679180 -8193989 + MLT1D LTR MaLR 274 505 0 1601 192 45 17 chr13 93681380 93681672 -8191497 + AluJo SINE Alu 1 300 -12 24 32 0 0 chr13 93681767 93681798 -8191371 + AT_rich Low_complexity Low_complexity 1 31 0 246 352 66 6 chr13 93681991 93682306 -8190863 + L1MC/D LINE L1 5369 5711 -605 2240 111 0 0 chr13 93682347 93682644 -8190525 + AluSx SINE Alu 1 297 -15 259 260 90 10 chr13 93683102 93683202 -8189967 + LTR33 LTR ERVL 111 218 -303 2172 204 59 35 chr13 93683221 93683829 -8189340 - MER92B LTR ERV1 -13 623 1 1186 181 36 5 chr13 93686128 93686349 -8186820 + AluJo SINE Alu 72 299 -13 291 273 41 27 chr13 93686612 93686811 -8186358 - MLT1G1 LTR MaLR -352 243 1 421 204 83 116 chr13 93688573 93688789 -8184380 - MER63A DNA MER1_type 0 210 2 382 272 103 15 chr13 93688802 93688938 -8184231 - MIR SINE MIR -20 242 95 511 340 83 17 chr13 93689028 93689269 -8183900 - L3 LINE CR1 -8 1569 1313 375 248 174 50 chr13 93689522 93689683 -8183486 + MER5A DNA MER1_type 9 189 0 2138 141 0 0 chr13 93689890 93690194 -8182975 + AluSx SINE Alu 1 304 -8 2318 141 86 5 chr13 93691077 93691473 -8181696 + MSTA LTR MaLR 1 428 0 9285 163 26 12 chr13 93691473 93693101 -8180068 + MSTA-int LTR MaLR 1 1651 0 2346 120 92 5 chr13 93693101 93693493 -8179676 + MSTA LTR MaLR 1 426 -2 809 182 42 0 chr13 93693507 93693672 -8179497 - MLT1B LTR MaLR -217 173 2 376 310 28 42 chr13 93693674 93693887 -8179282 - MIR SINE MIR -30 232 23 256 266 146 52 chr13 93694089 93694281 -8178888 - MER63A DNA MER1_type 0 210 1 1860 140 30 3 chr13 93694713 93695013 -8178156 - AluSx SINE Alu -4 308 1 258 81 0 0 chr13 93695216 93695253 -8177916 + (T)n Simple_repeat Simple_repeat 1 37 0 511 339 47 21 chr13 93695713 93695949 -8177220 - MIR SINE MIR 0 262 21 23 54 0 0 chr13 93696891 93696928 -8176241 + AT_rich Low_complexity Low_complexity 1 37 0 28 71 0 0 chr13 93697084 93697140 -8176029 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr13 93697147 93697168 -8176001 + AT_rich Low_complexity Low_complexity 1 21 0 479 292 29 99 chr13 93697973 93698072 -8175097 - L2 LINE L2 -1229 2085 1981 1837 149 76 0 chr13 93698072 93698360 -8174809 + AluSx SINE Alu 1 310 -2 479 292 29 99 chr13 93698360 93698572 -8174597 - L2 LINE L2 -1333 1981 1796 2649 216 21 10 chr13 93700336 93700612 -8172557 + L1MB4 LINE L1 5551 5822 -358 4478 132 66 19 chr13 93700612 93701401 -8171768 - LTR1B LTR ERV1 0 826 1 2649 216 21 10 chr13 93701401 93701741 -8171428 + L1MB4 LINE L1 5822 6174 -6 22 70 0 0 chr13 93702918 93702961 -8170208 + AT_rich Low_complexity Low_complexity 1 43 0 1243 163 0 0 chr13 93703665 93703855 -8169314 - AluJb SINE Alu -16 296 107 234 250 0 0 chr13 93703862 93703914 -8169255 - AluJo SINE Alu -145 157 106 * 237 250 0 29 chr13 93703904 93703972 -8169197 - AluJo SINE Alu -131 171 106 913 156 17 29 chr13 93704020 93704193 -8168976 - AluJb SINE Alu -141 171 1 281 121 155 0 chr13 93705129 93705187 -8167982 + MADE1 DNA Mariner 1 67 -13 491 250 10 0 chr13 93707034 93707138 -8166031 + MER5A DNA MER1_type 66 170 -19 2429 134 46 5 chr13 93707481 93707876 -8165293 + MSTA LTR MaLR 18 428 0 498 291 148 19 chr13 93708621 93708831 -8164338 - MIR SINE MIR -10 252 16 631 299 86 14 chr13 93709201 93709479 -8163690 + L1MEc LINE L1 61 358 -6038 445 322 20 50 chr13 93709469 93709870 -8163299 + L1MEc LINE L1 1195 1583 -4813 * 1466 187 66 119 chr13 93709884 93710276 -8162893 + L1MEc LINE L1 1850 2161 -4054 2117 122 3 0 chr13 93710276 93710562 -8162607 + AluSx SINE Alu 14 300 -12 1466 187 66 119 chr13 93710562 93710867 -8162302 + L1MEc LINE L1 2161 2481 -3734 192 337 116 21 chr13 93711122 93711217 -8161952 - L2 LINE L2 -494 2820 2717 207 343 157 20 chr13 93712007 93712109 -8161060 + MIR3 SINE MIR 40 155 -53 459 266 120 0 chr13 93712627 93712785 -8160384 - MIR SINE MIR -17 245 69 1898 118 15 0 chr13 93715782 93716053 -8157116 + AluSx SINE Alu 24 298 -14 290 236 56 0 chr13 93717347 93717419 -8155750 - MER91C DNA MER1_type -64 76 1 204 200 0 0 chr13 93721202 93721242 -8151927 + GA-rich Low_complexity Low_complexity 2 41 0 31 26 0 0 chr13 93721297 93721335 -8151834 + AT_rich Low_complexity Low_complexity 1 38 0 188 111 74 0 chr13 93721403 93721457 -8151712 + (TA)n Simple_repeat Simple_repeat 2 59 0 1256 179 58 0 chr13 93721518 93721741 -8151428 + MER46A DNA MER2_type 1 236 0 4379 157 16 21 chr13 93721853 93722643 -8150526 + L1MC2 LINE L1 5559 6344 0 1900 200 33 18 chr13 93723639 93724029 -8149140 + MSTD LTR MaLR 1 396 0 1620 189 27 71 chr13 93725652 93725752 -8147417 + MLT1B LTR MaLR 1 104 -286 2231 124 0 3 chr13 93725752 93726066 -8147103 - AluSq SINE Alu 0 313 1 1620 189 27 71 chr13 93726066 93726373 -8146796 + MLT1B LTR MaLR 104 390 0 678 278 58 40 chr13 93727390 93727513 -8145656 - LTR33 LTR ERVL -65 456 337 2322 123 19 45 chr13 93727513 93727887 -8145282 + THE1B LTR MaLR 1 364 0 678 278 58 40 chr13 93727887 93728159 -8145010 - LTR33 LTR ERVL -184 337 54 2482 224 99 14 chr13 93728411 93729127 -8144042 + MER97a DNA MER1_type? 24 800 -94 1669 105 26 2 chr13 93730124 93730425 -8142744 - THE1A LTR MaLR 0 355 1 2230 129 0 3 chr13 93730477 93730788 -8142381 - AluSx SINE Alu -2 310 1 244 254 56 0 chr13 93731217 93731288 -8141881 - MLT1J LTR MaLR -212 299 225 240 137 0 0 chr13 93731374 93731425 -8141744 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 225 0 0 0 chr13 93731962 93731987 -8141182 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 348 282 53 23 chr13 93733101 93733232 -8139937 + L2 LINE L2 3133 3267 -5 270 244 78 22 chr13 93734084 93734174 -8138995 - MLT1L LTR MaLR -520 95 1 495 191 138 21 chr13 93734343 93734532 -8138637 + L1M4 LINE L1 3680 3890 -2256 236 257 14 0 chr13 93734532 93734602 -8138567 + L1M4 LINE L1 3847 3917 -2229 532 297 6 42 chr13 93734619 93734784 -8138385 - MER8 DNA MER2_type -78 161 3 797 250 24 10 chr13 93734934 93735142 -8138027 + L1M4 LINE L1 4015 4225 -1921 528 302 123 29 chr13 93735340 93735787 -8137382 - L1MC/D LINE L1 -2056 5752 5264 229 179 0 30 chr13 93736508 93736575 -8136594 + (TATG)n Simple_repeat Simple_repeat 2 66 0 24 32 0 0 chr13 93739204 93739235 -8133934 + AT_rich Low_complexity Low_complexity 1 31 0 197 302 99 66 chr13 93740492 93740704 -8132465 + L2 LINE L2 2899 3117 -155 879 155 0 7 chr13 93741020 93741162 -8132007 - AluJb SINE Alu -171 141 1 257 245 93 40 chr13 93741685 93741836 -8131333 - MIR SINE MIR -46 216 58 192 125 0 0 chr13 93742980 93743012 -8130157 + (CA)n Simple_repeat Simple_repeat 1 32 0 429 198 28 9 chr13 93743405 93743511 -8129658 + MER81 DNA DNA 6 113 -1 1662 194 7 0 chr13 93743768 93744067 -8129102 - AluJo SINE Alu -11 301 1 537 241 35 6 chr13 93744094 93744268 -8128901 + MER20 DNA MER1_type 41 219 0 2460 61 0 0 chr13 93744890 93745186 -8127983 - AluY SINE Alu -15 296 1 1848 148 35 0 chr13 93745195 93745485 -8127684 - AluSx SINE Alu -12 300 1 1653 215 19 25 chr13 93746632 93746999 -8126170 + MLT1A1 LTR MaLR 1 365 0 635 273 87 6 chr13 93747295 93747478 -8125691 - MIR3 SINE MIR -7 201 4 1094 204 161 55 chr13 93747949 93748278 -8124891 + MLT1A1 LTR MaLR 1 364 -1 814 83 0 33 chr13 93748703 93748824 -8124345 + AluY SINE Alu 176 292 -19 399 262 36 71 chr13 93749172 93749340 -8123829 + MIR SINE MIR 56 217 -45 275 233 70 12 chr13 93749834 93749920 -8123249 - MIR3 SINE MIR -54 154 64 2779 127 19 60 chr13 93750363 93750844 -8122325 - MLT2C2 LTR ERVL -3 461 1 233 300 0 9 chr13 93751026 93751136 -8122033 - MIR SINE MIR -26 236 128 21 0 0 0 chr13 93751402 93751423 -8121746 + AT_rich Low_complexity Low_complexity 1 21 0 632 276 195 29 chr13 93752977 93753451 -8119718 + MLT1H1 LTR MaLR 24 547 -8 1135 141 19 19 chr13 93753498 93753711 -8119458 + L1MA4 LINE L1 6086 6298 -2 258 208 19 0 chr13 93757425 93757478 -8115691 - MER94 DNA DNA -2 132 79 209 132 26 0 chr13 93757531 93757569 -8115600 + (TAA)n Simple_repeat Simple_repeat 1 39 0 375 198 40 63 chr13 93757599 93757652 -8115517 + L1MC4 LINE L1 7918 7971 -71 1597 220 87 42 chr13 93757652 93757720 -8115449 - MLT1D LTR MaLR -2 503 440 2102 147 0 7 chr13 93757720 93758027 -8115142 - AluSx SINE Alu -7 305 1 1597 220 87 42 chr13 93758027 93758439 -8114730 - MLT1D LTR MaLR -65 440 1 375 198 40 63 chr13 93758439 93758511 -8114658 + L1MC4 LINE L1 7971 8040 -2 21 0 0 0 chr13 93758873 93758894 -8114275 + AT_rich Low_complexity Low_complexity 1 21 0 2165 45 0 0 chr13 93760197 93760440 -8112729 - L1PA3 LINE L1 -3 6152 5910 26 30 0 0 chr13 93760579 93760612 -8112557 + AT_rich Low_complexity Low_complexity 1 33 0 184 183 17 33 chr13 93760993 93761053 -8112116 + CT-rich Low_complexity Low_complexity 2 60 0 225 237 54 21 chr13 93761137 93761230 -8111939 - LTR14 LTR ERVK -227 321 226 1456 134 65 40 chr13 93761589 93761864 -8111305 + AluJo SINE Alu 1 282 -30 210 37 0 0 chr13 93761867 93761894 -8111275 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2227 177 58 0 chr13 93762178 93762608 -8110561 - MLT1C LTR MaLR -12 455 1 2371 167 26 112 chr13 93762647 93763253 -8109916 + MLT2B3 LTR ERVL 1 554 0 2313 123 27 33 chr13 93764075 93764440 -8108729 - THE1B LTR MaLR -1 363 1 988 226 36 0 chr13 93764610 93764805 -8108364 - MLT1A1 LTR MaLR -2 363 162 2588 31 0 0 chr13 93764825 93765114 -8108055 - AluY SINE Alu -12 299 11 1985 116 0 60 chr13 93765331 93765650 -8107519 + AluSx SINE Alu 13 312 0 5518 101 11 1 chr13 93765708 93766471 -8106698 - L1PA14 LINE L1 0 6161 5392 375 132 0 0 chr13 93767218 93767286 -8105883 + (TA)n Simple_repeat Simple_repeat 2 69 0 396 165 0 0 chr13 93767387 93767478 -8105691 + (TA)n Simple_repeat Simple_repeat 1 91 0 23 0 0 0 chr13 93770207 93770230 -8102939 + AT_rich Low_complexity Low_complexity 1 23 0 303 28 0 0 chr13 93772027 93772063 -8101106 + (TG)n Simple_repeat Simple_repeat 1 36 0 255 61 0 0 chr13 93772737 93772770 -8100399 + (CA)n Simple_repeat Simple_repeat 2 34 0 199 341 73 0 chr13 93773558 93773640 -8099529 - L2 LINE L2 -17 3255 3168 685 176 195 6 chr13 93774021 93774180 -8098989 + MER5A DNA MER1_type 1 189 0 532 205 0 108 chr13 93774282 93774448 -8098721 + MER5B DNA MER1_type 1 148 -30 1672 127 4 4 chr13 93777341 93777586 -8095583 - L1PB1 LINE L1 -4 6147 5903 3476 59 11 0 chr13 93777587 93778029 -8095140 - L1PB1 LINE L1 -425 5726 5280 763 268 86 47 chr13 93778497 93778881 -8094288 + MLT1D LTR MaLR 1 399 -106 2039 145 0 0 chr13 93779216 93779520 -8093649 + AluSx SINE Alu 1 304 -8 548 208 26 37 chr13 93779601 93779758 -8093411 + MLT1D LTR MaLR 235 497 -8 1657 190 99 33 chr13 93780636 93781000 -8092169 - MLT1B LTR MaLR -2 388 1 1959 109 46 3 chr13 93781050 93781333 -8091836 + AluY SINE Alu 1 295 -16 534 338 122 30 chr13 93781874 93782348 -8090821 - L3 LINE CR1 -85 1492 975 1410 249 74 106 chr13 93782817 93783612 -8089557 + L2 LINE L2 2350 3169 -144 221 0 35 0 chr13 93783612 93783641 -8089528 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2026 111 0 14 chr13 93783643 93783922 -8089247 - AluSg SINE Alu -33 277 3 1410 249 74 106 chr13 93783922 93784076 -8089093 + L2 LINE L2 3170 3278 -35 431 252 103 20 chr13 93786161 93786438 -8086731 + MLT1I LTR MaLR 69 402 -7 183 80 0 0 chr13 93786871 93786896 -8086273 + (T)n Simple_repeat Simple_repeat 1 25 0 225 83 0 0 chr13 93787328 93787364 -8085805 + (T)n Simple_repeat Simple_repeat 1 36 0 503 115 327 9 chr13 93788372 93788485 -8084684 - L1PA16 LINE L1 -9 6157 6009 335 275 129 17 chr13 93788687 93788865 -8084304 + MIR SINE MIR 50 247 -15 963 128 7 0 chr13 93788897 93789038 -8084131 - L1PA10 LINE L1 0 6168 6027 2575 43 0 3 chr13 93791332 93791633 -8081536 - AluY SINE Alu -11 300 1 312 242 0 0 chr13 93792627 93792693 -8080476 + MIR SINE MIR 187 252 -10 1817 91 0 0 chr13 93794044 93794274 -8078895 + AluSq SINE Alu 1 230 -83 999 155 6 0 chr13 93794906 93795067 -8078102 + MLT1B LTR MaLR 3 164 -226 769 209 40 40 chr13 93795473 93795698 -8077471 + MLT1B LTR MaLR 164 388 -2 1883 109 64 0 chr13 93797111 93797409 -8075760 + AluSx SINE Alu 1 315 0 22 35 0 0 chr13 93797807 93797836 -8075333 + AT_rich Low_complexity Low_complexity 1 29 0 197 309 86 12 chr13 93798237 93798318 -8074851 + MIR3 SINE MIR 106 192 -16 324 221 0 0 chr13 93799205 93799282 -8073887 + (TA)n Simple_repeat Simple_repeat 2 78 0 388 327 85 64 chr13 93799770 93800146 -8073023 - L2 LINE L2 0 3313 2930 1568 203 31 49 chr13 93800162 93800552 -8072617 + MLT1B LTR MaLR 1 383 -7 1128 347 60 38 chr13 93800637 93800769 -8072400 - L2 LINE L2 -586 2728 2600 761 179 0 22 chr13 93800769 93800903 -8072266 + FLAM_C SINE Alu 2 132 -1 1128 347 60 38 chr13 93800903 93801393 -8071776 - L2 LINE L2 -714 2600 2079 887 244 38 0 chr13 93801393 93801602 -8071567 - MER20 DNA MER1_type 0 219 3 1128 347 60 38 chr13 93801602 93801852 -8071317 - L2 LINE L2 -1235 2079 1836 466 321 75 34 chr13 93802046 93802404 -8070765 + MLT1L LTR MaLR 152 524 -91 2157 114 0 0 chr13 93803350 93803630 -8069539 + AluSx SINE Alu 1 280 -32 1738 141 76 0 chr13 93804029 93804306 -8068863 - AluSx SINE Alu -14 298 1 2120 130 3 3 chr13 93804651 93804959 -8068210 + AluSx SINE Alu 1 308 -4 425 262 170 14 chr13 93805131 93805272 -8067897 - MIR SINE MIR -98 164 2 245 264 74 61 chr13 93805832 93805995 -8067174 + MLT1I LTR MaLR 245 409 0 1422 221 80 40 chr13 93806000 93806449 -8066720 + MLT1C LTR MaLR 1 467 0 635 187 0 16 chr13 93808029 93808211 -8064958 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 276 200 0 0 chr13 93808225 93808305 -8064864 + (TGGA)n Simple_repeat Simple_repeat 2 81 0 627 167 0 0 chr13 93808327 93808465 -8064704 + (TGGA)n Simple_repeat Simple_repeat 4 141 0 736 306 65 69 chr13 93808534 93809044 -8064125 + LTR67 LTR ERVL 38 545 -12 258 192 0 0 chr13 93809106 93809158 -8064011 + (TG)n Simple_repeat Simple_repeat 2 53 0 2278 103 0 3 chr13 93812044 93812344 -8060825 - AluSg SINE Alu -11 299 1 42 20 0 0 chr13 93812402 93812451 -8060718 + AT_rich Low_complexity Low_complexity 1 49 0 180 178 89 0 chr13 93813684 93813729 -8059440 - L2 LINE L2 -1 3312 3264 24 0 0 0 chr13 93815231 93815255 -8057914 + AT_rich Low_complexity Low_complexity 1 24 0 399 225 35 2 chr13 93815349 93815462 -8057707 - MLT1F1 LTR MaLR 0 567 433 501 216 18 134 chr13 93815510 93815728 -8057441 - MLT1F1 LTR MaLR -339 228 35 337 239 100 106 chr13 93815926 93816106 -8057063 - MIR SINE MIR -73 189 11 2043 117 20 3 chr13 93816831 93817130 -8056039 - AluSx SINE Alu -8 304 1 211 324 169 0 chr13 93817396 93817532 -8055637 - L2 LINE L2 -219 3053 2895 1953 184 6 20 chr13 93817652 93817987 -8055182 + MLT1A1 LTR MaLR 13 344 -21 1990 140 64 17 chr13 93817987 93818345 -8054824 + THE1C LTR MaLR 1 375 0 1953 184 6 20 chr13 93818345 93818367 -8054802 + MLT1A1 LTR MaLR 344 365 0 23 0 0 0 chr13 93819202 93819225 -8053944 + AT_rich Low_complexity Low_complexity 1 23 0 2094 146 3 0 chr13 93819516 93819824 -8053345 + AluSx SINE Alu 1 309 -3 230 156 0 0 chr13 93819992 93820037 -8053132 + (CCCTAA)n Simple_repeat Simple_repeat 6 50 0 1295 206 100 24 chr13 93820893 93821232 -8051937 + MLT1A1 LTR MaLR 1 365 0 391 153 12 12 chr13 93821325 93821410 -8051759 + GA-rich Low_complexity Low_complexity 4 88 0 384 242 2 0 chr13 93821426 93821507 -8051662 - AluS SINE Alu -237 66 1 206 315 0 0 chr13 93821589 93821643 -8051526 - L2 LINE L2 -6 3307 3254 747 62 0 0 chr13 93821878 93821975 -8051194 + (TA)n Simple_repeat Simple_repeat 1 97 0 297 0 0 0 chr13 93821974 93822007 -8051162 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 2016 102 29 15 chr13 93822008 93822282 -8050887 - AluSq SINE Alu -35 278 1 409 326 122 8 chr13 93822519 93822881 -8050288 - L2 LINE L2 -425 2889 2487 277 49 24 0 chr13 93823195 93823236 -8049933 - MADE1 DNA Mariner -33 47 6 204 301 83 53 chr13 93823479 93823612 -8049557 + L2 LINE L2 3116 3252 -20 1771 201 18 6 chr13 93823961 93824304 -8048865 - MLT1A1 LTR MaLR -4 361 15 1993 125 3 3 chr13 93826114 93826430 -8046739 - AluSx SINE Alu 0 316 1 21 0 0 0 chr13 93826934 93826955 -8046214 + AT_rich Low_complexity Low_complexity 1 21 0 2103 161 33 25 chr13 93827136 93827534 -8045635 + L1MC1 LINE L1 5933 6333 0 751 257 16 47 chr13 93828126 93828383 -8044786 - MLT1B LTR MaLR -141 249 1 1616 182 7 21 chr13 93829098 93829389 -8043780 - AluJo SINE Alu -25 287 1 1890 139 3 17 chr13 93830249 93830551 -8042618 + AluJb SINE Alu 14 311 -1 2152 136 0 0 chr13 93830958 93831267 -8041902 + AluSx SINE Alu 1 309 -3 333 0 0 0 chr13 93832949 93832986 -8040183 + (CA)n Simple_repeat Simple_repeat 2 38 0 602 327 57 34 chr13 93833632 93833860 -8039309 + MLT1I LTR MaLR 98 336 -73 1962 154 3 0 chr13 93833860 93834165 -8039004 + AluSx SINE Alu 1 306 -6 602 327 57 34 chr13 93834165 93834233 -8038936 + MLT1I LTR MaLR 336 401 -8 27 29 0 0 chr13 93834637 93834671 -8038498 + AT_rich Low_complexity Low_complexity 1 34 0 181 273 208 13 chr13 93834698 93834775 -8038394 + MER5A DNA MER1_type 45 136 -53 31 0 0 0 chr13 93835026 93835057 -8038112 + AT_rich Low_complexity Low_complexity 1 31 0 219 217 0 0 chr13 93835478 93835524 -8037645 - MIR SINE MIR -108 100 55 263 252 102 82 chr13 93835564 93835711 -8037458 + Charlie8 DNA MER1_type 2 151 -2266 1754 144 8 0 chr13 93839375 93839678 -8033491 - AluSx SINE Alu 0 332 28 372 289 137 0 chr13 93840213 93840417 -8032752 - MIR SINE MIR -16 246 15 2193 102 13 26 chr13 93840454 93840758 -8032411 - AluSx SINE Alu -12 300 1 1026 183 74 100 chr13 93840927 93841277 -8031892 + Charlie4a DNA MER1_type 167 507 -1 303 274 0 0 chr13 93841891 93841964 -8031205 - Charlie4a DNA MER1_type -374 134 62 202 222 0 0 chr13 93841966 93842011 -8031158 + T-rich Low_complexity Low_complexity 3 47 0 2117 117 19 0 chr13 93843219 93843526 -8029643 - AluSq SINE Alu 0 313 1 28 29 0 0 chr13 93843601 93843636 -8029533 + AT_rich Low_complexity Low_complexity 1 35 0 437 222 8 34 chr13 93843716 93843833 -8029336 - MIR SINE MIR -37 225 112 264 279 107 66 chr13 93843980 93844154 -8029015 - MER112 DNA MER1_type -6 254 66 362 0 69 0 chr13 93844154 93844212 -8028957 + (TG)n Simple_repeat Simple_repeat 1 62 0 264 279 107 66 chr13 93844212 93844281 -8028888 - MER112 DNA MER1_type -194 66 1 750 150 8 8 chr13 93844944 93845064 -8028105 + FLAM_A SINE Alu 1 120 -13 293 344 54 12 chr13 93845641 93845882 -8027287 - MIR SINE MIR -5 257 7 2099 134 3 7 chr13 93846023 93846330 -8026839 - AluSx SINE Alu -6 306 1 1437 212 42 29 chr13 93846382 93846760 -8026409 - LTR37A LTR ERV1 0 426 44 781 220 54 5 chr13 93846774 93846960 -8026209 + MER58A DNA MER1_type 30 224 0 235 200 0 20 chr13 93846960 93847008 -8026161 - LTR37A LTR ERV1 -379 47 1 1771 186 22 55 chr13 93847107 93847510 -8025659 - MLT1B LTR MaLR 0 390 1 2058 126 25 13 chr13 93848017 93848334 -8024835 - Tigger7 DNA MER2_type -23 2464 2144 705 217 254 9 chr13 93848333 93848550 -8024619 + Tigger7 DNA MER2_type 76 345 -2142 * 301 206 132 0 chr13 93848552 93848620 -8024549 - Tigger7 DNA MER2_type -628 77 1 2198 129 0 0 chr13 93848729 93849040 -8024129 + AluSx SINE Alu 1 311 -1 293 335 91 0 chr13 93849124 93849300 -8023869 - MIR SINE MIR -15 247 56 203 61 30 0 chr13 93850730 93850763 -8022406 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 24 53 0 0 chr13 93850979 93851017 -8022152 + AT_rich Low_complexity Low_complexity 1 38 0 352 302 9 0 chr13 93851883 93851989 -8021180 + L1MC/D LINE L1 5566 5672 -2136 400 224 91 56 chr13 93852008 93852191 -8020978 - MLT1J1 LTR MaLR -7 424 232 328 235 83 38 chr13 93852967 93853099 -8020070 + L1MC4 LINE L1 7904 8041 -1 305 328 66 8 chr13 93854727 93854849 -8018320 + L2 LINE L2 3143 3271 -1 217 231 0 0 chr13 93854857 93854896 -8018273 + (TG)n Simple_repeat Simple_repeat 2 40 0 891 87 0 0 chr13 93855728 93855854 -8017315 + (CA)n Simple_repeat Simple_repeat 2 127 0 384 296 15 7 chr13 93856588 93856723 -8016446 - MIR3 SINE MIR -31 177 42 189 107 0 0 chr13 93857299 93857327 -8015842 + (T)n Simple_repeat Simple_repeat 1 28 0 234 254 0 15 chr13 93858985 93859052 -8014117 + A-rich Low_complexity Low_complexity 3 68 0 23 0 0 0 chr13 93859079 93859102 -8014067 + AT_rich Low_complexity Low_complexity 1 23 0 228 133 50 0 chr13 93860061 93860121 -8013048 + (TA)n Simple_repeat Simple_repeat 1 63 0 180 77 0 0 chr13 93862633 93862659 -8010510 + (ATG)n Simple_repeat Simple_repeat 1 26 0 374 0 22 0 chr13 93864794 93864840 -8008329 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1526 66 0 0 chr13 93866982 93867165 -8006004 - L1PA5 LINE L1 -4 6150 5968 2542 59 0 0 chr13 93870768 93871073 -8002096 - AluY SINE Alu -6 305 1 1656 132 20 121 chr13 93872596 93872944 -8000225 + LTR32 LTR ERVL 77 389 -82 641 208 74 30 chr13 93873348 93873550 -7999619 - MER20B DNA MER1_type -6 777 567 1255 189 127 99 chr13 93873604 93874091 -7999078 + MLT1F1 LTR MaLR 67 567 0 2003 122 116 30 chr13 93874702 93875037 -7998132 + THE1B LTR MaLR 1 364 0 1087 231 75 72 chr13 93875060 93875433 -7997736 + MLT1A2 LTR MaLR 1 374 0 260 298 32 32 chr13 93875816 93875910 -7997259 - MER20B DNA MER1_type -688 95 2 312 324 0 20 chr13 93876561 93876663 -7996506 + L2 LINE L2 3167 3266 -47 458 198 55 77 chr13 93876743 93876925 -7996244 - L1MC5 LINE L1 -27 7934 7757 1294 99 0 0 chr13 93876953 93877125 -7996044 - L1MA2 LINE L1 -7 6297 6126 1008 117 12 14 chr13 93877152 93877320 -7995849 - L1MA2 LINE L1 -589 5565 5402 494 279 36 18 chr13 93877325 93877522 -7995647 - HERV16 LTR ERVL -3589 2102 1901 1088 291 63 26 chr13 93877627 93878159 -7995010 - HERV16 LTR ERVL -3839 1157 567 2087 121 3 10 chr13 93878159 93878457 -7994712 - AluSx SINE Alu -16 296 1 1088 291 63 26 chr13 93878457 93878905 -7994264 - HERV16 LTR ERVL -4429 567 137 780 304 33 21 chr13 93879017 93879352 -7993817 - LTR16A LTR ERVL -8 442 104 189 175 31 144 chr13 93879889 93879986 -7993183 + L2 LINE L2 2628 2713 -601 446 274 30 56 chr13 93879986 93880183 -7992986 - L2 LINE L2 -1 3312 3121 21 0 0 0 chr13 93882070 93882091 -7991078 + AT_rich Low_complexity Low_complexity 1 21 0 611 259 41 12 chr13 93882097 93882267 -7990902 - MIR SINE MIR -64 198 24 576 242 15 8 chr13 93885928 93886060 -7987109 - MIR SINE MIR -49 213 81 29 0 0 0 chr13 93886774 93886803 -7986366 + AT_rich Low_complexity Low_complexity 1 29 0 377 186 10 82 chr13 93887747 93887844 -7985325 - Tigger5 DNA MER2_type 0 2323 2234 262 196 20 0 chr13 93887851 93887902 -7985267 - Tigger5 DNA MER2_type -2268 55 4 378 0 0 0 chr13 93888784 93888826 -7984343 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr13 93889390 93889415 -7983754 + AT_rich Low_complexity Low_complexity 1 25 0 2046 82 49 0 chr13 93889887 93890185 -7982984 + AluSc SINE Alu 1 311 0 1090 158 6 0 chr13 93890491 93890655 -7982514 + FRAM SINE Alu 1 165 -1 351 264 57 64 chr13 93891180 93891320 -7981849 + L2 LINE L2 3175 3313 0 186 242 40 121 chr13 93893599 93893698 -7979471 + MER5A DNA MER1_type 95 185 -4 220 283 104 47 chr13 93895109 93895215 -7977954 + L2 LINE L2 3201 3312 -1 2290 92 3 0 chr13 93897211 93897503 -7975666 + AluSg1 SINE Alu 2 294 -15 216 343 0 49 chr13 93898993 93899095 -7974074 + L2 LINE L2 3176 3272 0 705 269 70 22 chr13 93900532 93900759 -7972410 + MIR SINE MIR 16 253 -9 466 344 36 32 chr13 93901249 93901496 -7971673 - MIR SINE MIR 0 262 15 806 208 28 6 chr13 93902178 93902356 -7970813 + MER5A DNA MER1_type 5 186 -3 180 134 15 30 chr13 93903433 93903500 -7969669 + A-rich Low_complexity Low_complexity 5 70 0 24 0 0 0 chr13 93908107 93908131 -7965038 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr13 93910473 93910517 -7962652 + GC_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr13 93910852 93910887 -7962282 + GC_rich Low_complexity Low_complexity 1 35 0 356 284 117 102 chr13 93911121 93911713 -7961456 - L1M2 LINE L1 -5457 1392 633 24 0 0 0 chr13 93911765 93911789 -7961380 + GC_rich Low_complexity Low_complexity 1 24 0 332 278 22 0 chr13 93913282 93913372 -7959797 - L1MC4 LINE L1 -1337 6705 6614 246 208 0 0 chr13 93913372 93913425 -7959744 + (TA)n Simple_repeat Simple_repeat 2 54 0 2408 66 3 3 chr13 93914374 93914677 -7958492 + AluY SINE Alu 1 303 -8 2068 103 0 4 chr13 93916100 93916371 -7956798 + AluSc SINE Alu 1 270 -39 22 0 0 0 chr13 93916512 93916534 -7956635 + AT_rich Low_complexity Low_complexity 1 22 0 333 0 0 0 chr13 93916859 93916896 -7956273 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 24 0 0 0 chr13 93919654 93919678 -7953491 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr13 93919966 93919989 -7953180 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 200 222 0 0 chr13 93920122 93920167 -7953002 + T-rich Low_complexity Low_complexity 4 48 0 234 189 14 54 chr13 93920247 93920321 -7952848 + L1MA4 LINE L1 6226 6296 -4 803 220 95 30 chr13 93921187 93921387 -7951782 + MER20 DNA MER1_type 7 219 0 257 178 111 11 chr13 93922922 93923012 -7950157 + L1MC4a LINE L1 5393 5491 -2317 1326 194 107 71 chr13 93923012 93923394 -7949775 + MSTD LTR MaLR 1 396 0 603 270 43 91 chr13 93923425 93923821 -7949348 + L1MC4a LINE L1 5587 5963 -1845 2108 105 3 16 chr13 93924880 93925186 -7947983 - AluY SINE Alu -9 302 1 747 245 165 15 chr13 93926731 93926992 -7946177 - MLT1D LTR MaLR 0 505 206 2183 196 65 34 chr13 93927023 93927717 -7945452 - MLT1D-int LTR MaLR -487 884 42 866 206 78 23 chr13 93927717 93927936 -7945233 - MLT1D LTR MaLR -23 482 252 228 320 96 8 chr13 93930123 93930248 -7942921 + L2 LINE L2 2931 3066 -206 2223 110 7 0 chr13 93930739 93931039 -7942130 + AluSg SINE Alu 1 302 -8 2124 99 3 20 chr13 93931210 93931512 -7941657 + AluSq SINE Alu 1 297 -16 421 228 96 13 chr13 93931561 93931781 -7941388 + MER5C DNA MER1_type 2 323 -1 34 0 0 0 chr13 93933520 93933554 -7939615 + AT_rich Low_complexity Low_complexity 1 34 0 451 177 229 11 chr13 93936587 93936762 -7936407 + Charlie5 DNA MER1_type 2412 2624 0 360 0 0 0 chr13 93937500 93937540 -7935629 + (CA)n Simple_repeat Simple_repeat 2 41 0 339 256 151 52 chr13 93937916 93938088 -7935081 - REP3 LTR ERV -127 435 247 2007 68 71 71 chr13 93938787 93939098 -7934071 + AluY SINE Alu 1 311 0 331 301 85 53 chr13 93939265 93939511 -7933658 - MIR SINE MIR -2 260 7 861 139 16 0 chr13 93939600 93939722 -7933447 + AluJb SINE Alu 1 124 -188 292 307 169 0 chr13 93940346 93940512 -7932657 - MIR SINE MIR -3 259 66 201 343 35 42 chr13 93940645 93940788 -7932381 + L2 LINE L2 2067 2208 -1106 190 281 156 50 chr13 93941102 93941301 -7931868 + L2 LINE L2 2614 2833 -481 350 269 0 0 chr13 93941768 93941846 -7931323 + L2 LINE L2 3235 3312 -1 399 160 0 27 chr13 93943113 93943188 -7929981 + L1ME2 LINE L1 6058 6130 -34 321 245 20 33 chr13 93943659 93943810 -7929359 + C-rich Low_complexity Low_complexity 6 154 0 195 288 34 0 chr13 93944722 93944781 -7928388 + MIR SINE MIR 86 146 -62 739 230 113 18 chr13 93944848 93945070 -7928099 - MIR SINE MIR -5 257 15 330 282 104 44 chr13 93945252 93945617 -7927552 + L1M4 LINE L1 4316 4702 -1444 1102 200 21 30 chr13 93945621 93945856 -7927313 - MLT1A1 LTR MaLR 0 365 133 758 163 15 7 chr13 93945857 93945992 -7927177 + MLT1A1 LTR MaLR 3 138 -227 1250 207 5 148 chr13 93945992 93946418 -7926751 - MLT1A1 LTR MaLR 0 365 1 1113 203 19 9 chr13 93946418 93946629 -7926540 + MLT1A1 LTR MaLR 134 346 -19 609 130 36 65 chr13 93947051 93947189 -7925980 - MLT1A1 LTR MaLR -231 134 1 297 196 10 39 chr13 93947422 93947524 -7925645 + (TA)n Simple_repeat Simple_repeat 1 99 0 1007 192 121 5 chr13 93947576 93947800 -7925369 - MLT1C LTR MaLR 0 467 218 2264 104 0 0 chr13 93947888 93948177 -7924992 + AluSg1 SINE Alu 1 289 -20 228 67 0 0 chr13 93948229 93948259 -7924910 + (A)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr13 93948577 93948605 -7924564 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2376 126 24 21 chr13 93948789 93949163 -7924006 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr13 93949587 93949629 -7923540 + AT_rich Low_complexity Low_complexity 1 42 0 1572 196 111 46 chr13 93950432 93950892 -7922277 - MER92B LTR ERV1 0 636 147 2136 131 30 40 chr13 93950903 93951329 -7921840 + THE1C LTR MaLR 1 428 0 580 215 76 7 chr13 93951329 93951467 -7921702 - MER92B LTR ERV1 -488 148 1 4012 185 132 134 chr13 93951499 93953370 -7919799 - L1MCa LINE L1 -4510 1916 51 214 154 77 0 chr13 93953831 93953870 -7919299 - MER5A DNA MER1_type -2 187 146 1685 231 58 14 chr13 93954167 93954618 -7918551 + MLT1C LTR MaLR 1 396 0 1281 254 160 18 chr13 93955267 93955774 -7917395 - MLT1G LTR MaLR -11 579 1 310 323 11 11 chr13 93955854 93955947 -7917222 + MIR3 SINE MIR 82 174 -34 2320 104 0 0 chr13 93956331 93956629 -7916540 - AluSg SINE Alu -12 298 1 347 288 101 45 chr13 93956870 93957068 -7916101 - MIR SINE MIR -26 236 28 920 239 8 59 chr13 93957198 93957453 -7915716 - MER45C DNA AcHobo 0 953 712 672 243 60 32 chr13 93957648 93957866 -7915303 - MER45C DNA AcHobo -729 224 1 472 284 116 13 chr13 93958193 93958425 -7914744 + LTR16C LTR ERVL 233 488 -3 2687 132 48 19 chr13 93958492 93958908 -7914261 + MSTC LTR MaLR 1 428 0 1472 274 69 35 chr13 93959169 93959734 -7913435 + MLT1L LTR MaLR 15 598 -17 2004 148 37 53 chr13 93960757 93961136 -7912033 + THE1C LTR MaLR 3 375 0 7901 142 55 35 chr13 93961136 93962502 -7910667 + THE1C-int LTR MaLR 1 1393 -187 1799 139 29 46 chr13 93962640 93962985 -7910184 + THE1C LTR MaLR 37 375 0 207 0 0 0 chr13 93963120 93963143 -7910026 + (TG)n Simple_repeat Simple_repeat 2 24 0 2067 194 35 42 chr13 93963143 93963623 -7909546 + MER31A LTR ERV1 1 477 -8 204 40 0 0 chr13 93963827 93963852 -7909317 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 708 163 25 104 chr13 93964340 93964542 -7908627 - MER53 DNA DNA 0 189 4 884 229 38 30 chr13 93964701 93964963 -7908206 - L1MC/D LINE L1 -2285 5759 5496 239 272 46 35 chr13 93965231 93965448 -7907721 - L1MC/D LINE L1 -3789 2593 2374 226 276 9 29 chr13 93965828 93965933 -7907236 - HAL1b LINE L1 -506 842 740 666 224 118 72 chr13 93966035 93966366 -7906803 - HAL1b LINE L1 -809 539 194 207 100 0 0 chr13 93966598 93966628 -7906541 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2116 106 28 0 chr13 93966631 93966913 -7906256 - AluSc SINE Alu -15 294 5 251 251 117 12 chr13 93967007 93967170 -7905999 + L1MC4a LINE L1 5815 5994 -1814 271 353 156 13 chr13 93967527 93968077 -7905092 + L2 LINE L2 1509 2137 -1177 220 208 19 19 chr13 93968112 93968165 -7905004 + L2 LINE L2 2231 2283 -1031 308 250 0 0 chr13 93968166 93968230 -7904939 + Tigger2 DNA MER2_type 2 65 -2653 * 2747 134 34 7 chr13 93968219 93968658 -7904511 + Tigger2 DNA MER2_type 2268 2718 0 209 349 0 0 chr13 93968659 93968725 -7904444 + L2 LINE L2 2283 2348 -966 292 263 14 124 chr13 93969453 93969670 -7903499 + HAL1 LINE L1 1 193 -2314 322 103 32 56 chr13 93970099 93970225 -7902944 + (TG)n Simple_repeat Simple_repeat 1 123 0 198 123 41 41 chr13 93970251 93970324 -7902845 + (TG)n Simple_repeat Simple_repeat 2 74 0 1155 186 95 73 chr13 93970955 93971282 -7901887 - L1MD3 LINE L1 -14 7981 7648 273 215 188 21 chr13 93971393 93971537 -7901632 + MLT1D LTR MaLR 262 429 -76 1245 180 0 18 chr13 93971554 93971776 -7901393 - AluJo SINE Alu -76 236 19 239 145 24 0 chr13 93971792 93971843 -7901326 + MLT1E2 LTR MaLR 416 626 0 266 197 74 66 chr13 93972158 93972280 -7900889 + LTR33 LTR ERVL 48 170 -351 316 269 171 6 chr13 93972380 93972555 -7900614 + LTR33 LTR ERVL 310 513 -8 603 219 17 0 chr13 93972667 93972786 -7900383 + MLT1B LTR MaLR 1 121 -269 1474 127 78 37 chr13 93972935 93973203 -7899966 - THE1B LTR MaLR -85 279 1 267 326 48 53 chr13 93973591 93973818 -7899351 + L2 LINE L2 2174 2399 -915 599 293 102 32 chr13 93973958 93974269 -7898900 + L1MC4a LINE L1 5373 5648 -473 1683 123 0 62 chr13 93974269 93974545 -7898624 - AluSx SINE Alu -10 302 44 599 293 102 32 chr13 93974545 93974734 -7898435 + L1MC4a LINE L1 5648 5822 -299 236 220 20 0 chr13 93974793 93974843 -7898326 + HAL1b LINE L1 1201 1251 -97 21 0 0 0 chr13 93974943 93974964 -7898205 + AT_rich Low_complexity Low_complexity 1 21 0 894 289 122 78 chr13 93976075 93976356 -7896813 + L2 LINE L2 874 1141 -2173 2434 99 0 3 chr13 93976356 93976670 -7896499 + AluSq SINE Alu 1 313 0 894 289 122 78 chr13 93976670 93977284 -7895885 + L2 LINE L2 1141 1808 -1506 227 164 36 0 chr13 93977347 93977402 -7895767 + (TA)n Simple_repeat Simple_repeat 2 58 0 222 176 0 0 chr13 93977560 93977611 -7895558 + CT-rich Low_complexity Low_complexity 2 52 0 366 272 26 0 chr13 93977707 93977821 -7895348 + GA-rich Low_complexity Low_complexity 2 118 0 189 107 0 0 chr13 93977821 93977849 -7895320 + (GGAGAA)n Simple_repeat Simple_repeat 5 32 0 834 305 80 26 chr13 93978018 93978559 -7894610 - L1ME3A LINE L1 -273 5880 5311 3084 76 0 0 chr13 93978585 93978980 -7894189 + MER41A LTR ERV1 1 395 -159 231 283 58 22 chr13 93979001 93979139 -7894030 - L1ME3A LINE L1 -1002 5127 4985 362 257 17 4 chr13 93979457 93979566 -7893603 - L1MEd LINE L1 -4636 1576 1383 6615 146 18 34 chr13 93979628 93979777 -7893392 + L1MA9 LINE L1 4204 4354 -1958 2225 135 130 16 chr13 93979777 93980161 -7893008 + MSTA LTR MaLR 1 428 0 6615 146 18 34 chr13 93980161 93982151 -7891018 + L1MA9 LINE L1 4354 6312 0 300 260 71 77 chr13 93982152 93982460 -7890709 - L1MEd LINE L1 -4862 1257 1061 425 324 93 29 chr13 93982662 93982940 -7890229 - L2 LINE L2 -558 2756 2461 1292 261 112 49 chr13 93983059 93983525 -7889644 + L2 LINE L2 1276 1790 -1524 2039 122 72 36 chr13 93983525 93983885 -7889284 + THE1C LTR MaLR 3 375 0 1292 261 112 49 chr13 93983885 93984027 -7889142 + L2 LINE L2 1790 1922 -1392 541 211 242 27 chr13 93984045 93984268 -7888901 + LTR16A1 LTR ERVL 187 457 0 238 243 68 39 chr13 94035374 94035477 -7837692 + MLT1D LTR MaLR 2 107 -398 2022 157 47 31 chr13 94035482 94036018 -7837151 - MLT2A2 LTR ERVL 0 554 1 1213 240 28 33 chr13 94036027 94036419 -7836750 + MLT1D LTR MaLR 116 505 0 1079 220 78 39 chr13 94036424 94036783 -7836386 - MLT1A2 LTR MaLR -1 373 1 40 37 0 0 chr13 94036907 94036961 -7836208 + AT_rich Low_complexity Low_complexity 1 54 0 660 201 53 0 chr13 94036981 94037150 -7836019 + L1MA8 LINE L1 6101 6278 -13 1171 268 30 0 chr13 94037199 94037572 -7835597 - L1MD3 LINE L1 -8 7987 7604 223 250 67 0 chr13 94037981 94038041 -7835128 - MIR SINE MIR 0 262 199 486 326 123 34 chr13 94038249 94038657 -7834512 - L3 LINE CR1 -4 1573 1130 331 211 169 18 chr13 94040791 94040957 -7832212 + Charlie7 DNA MER1_type 348 538 -2074 259 169 62 31 chr13 94041112 94041177 -7831992 + Charlie7 DNA MER1_type 617 683 -1929 23 0 0 0 chr13 94041196 94041219 -7831950 + AT_rich Low_complexity Low_complexity 1 23 0 487 341 57 18 chr13 94042055 94042389 -7830780 + MLT1K LTR MaLR 234 580 -8 219 190 69 17 chr13 94042523 94042581 -7830588 + MIR SINE MIR 103 149 -59 404 301 143 11 chr13 94042992 94043278 -7829891 - MLT1K LTR MaLR -31 557 234 235 224 60 17 chr13 94044725 94044841 -7828328 + L1MC/D LINE L1 5210 5330 -816 498 323 11 46 chr13 94044929 94045086 -7828083 + L1MC/D LINE L1 5490 5636 -2172 2285 112 19 27 chr13 94045086 94045452 -7827717 - THE1B LTR MaLR 0 364 2 498 323 11 46 chr13 94045452 94045557 -7827612 + L1MC/D LINE L1 5636 5743 -2065 2361 103 0 0 chr13 94046164 94046474 -7826695 + AluSx SINE Alu 1 310 -2 1944 162 13 0 chr13 94048719 94049027 -7824142 + AluJb SINE Alu 1 312 0 22 56 0 0 chr13 94051740 94051776 -7821393 + AT_rich Low_complexity Low_complexity 1 36 0 2205 111 3 7 chr13 94051871 94052178 -7820991 + AluSc SINE Alu 1 306 -3 326 312 13 57 chr13 94052660 94052817 -7820352 - MIR SINE MIR -66 196 47 511 262 54 48 chr13 94053138 94053306 -7819863 + MER5A DNA MER1_type 21 189 0 255 220 33 0 chr13 94055682 94055773 -7817396 + CT-rich Low_complexity Low_complexity 2 95 0 1727 158 44 0 chr13 94055773 94056071 -7817098 - AluSx SINE Alu 0 312 2 206 299 110 16 chr13 94056213 94056340 -7816829 + L2 LINE L2 2712 2850 -464 677 329 163 26 chr13 94056965 94058080 -7815089 - L2 LINE L2 -213 3059 1789 205 237 0 102 chr13 94058369 94058428 -7814741 + MER91 DNA MER1_type 130 182 -8 340 336 93 26 chr13 94058457 94058769 -7814400 - L2 LINE L2 -1707 1607 1275 1747 106 4 0 chr13 94058916 94059171 -7813998 + L1P4 LINE L1 5400 5655 -519 306 0 0 0 chr13 94059317 94059351 -7813818 + (CA)n Simple_repeat Simple_repeat 2 35 0 190 317 173 0 chr13 94059570 94059674 -7813495 + MIR SINE MIR 48 169 -93 800 148 0 22 chr13 94060167 94060302 -7812867 - FLAM_A SINE Alu 0 142 11 1994 138 26 34 chr13 94060303 94060681 -7812488 - THE1C LTR MaLR 0 375 1 183 315 98 0 chr13 94063915 94064007 -7809162 - MIR SINE MIR -70 192 92 429 103 15 0 chr13 94064007 94064075 -7809094 + Alu SINE Alu 1 69 -240 2347 80 0 3 chr13 94064175 94064475 -7808694 + AluY SINE Alu 1 299 -12 317 354 10 0 chr13 94064489 94064585 -7808584 - MIR SINE MIR -158 104 8 21 0 0 0 chr13 94066672 94066693 -7806476 + AT_rich Low_complexity Low_complexity 1 21 0 198 245 102 0 chr13 94067747 94067796 -7805373 + MIR SINE MIR 95 148 -60 483 18 0 0 chr13 94067803 94067859 -7805310 + (CTG)n Simple_repeat Simple_repeat 1 56 0 192 298 18 0 chr13 94067995 94068052 -7805117 + MIR3 SINE MIR 151 208 0 7614 206 60 85 chr13 94068408 94070104 -7803065 - L1MB7 LINE L1 -60 6935 5199 970 178 11 171 chr13 94070104 94070385 -7802784 - MER8 DNA MER2_type -3 236 1 7614 206 60 85 chr13 94070385 94072525 -7800644 - L1MB7 LINE L1 -1796 5199 2926 569 196 0 0 chr13 94072528 94072625 -7800544 - MLT1B LTR MaLR 0 390 294 857 208 51 77 chr13 94072752 94073026 -7800143 - MLT1B LTR MaLR -123 267 1 449 244 65 13 chr13 94073031 94073260 -7799909 - L1MB7 LINE L1 -4037 2922 2682 5724 221 52 52 chr13 94073321 94074176 -7798993 - L1MB7 LINE L1 -4488 2471 1617 1844 169 7 3 chr13 94074176 94074484 -7798685 - AluJb SINE Alu -1 311 3 5724 221 52 52 chr13 94074484 94075192 -7797977 - L1MB7 LINE L1 -5342 1617 910 2052 59 0 28 chr13 94075192 94075481 -7797688 + L1PA6 LINE L1 5874 6154 0 5724 221 52 52 chr13 94075481 94076043 -7797126 - L1MB7 LINE L1 -6049 910 1 205 298 77 67 chr13 94077210 94077314 -7795855 - L2 LINE L2 -26 3287 3183 1107 202 105 28 chr13 94077537 94077898 -7795271 - MER3 DNA MER1_type 0 2622 2234 318 202 105 48 chr13 94077904 94078028 -7795141 - MER3 DNA MER1_type -41 168 38 194 372 0 21 chr13 94078111 94078205 -7794964 - MIR SINE MIR -75 133 42 269 135 19 0 chr13 94078326 94078378 -7794791 + GA-rich Low_complexity Low_complexity 1 53 0 181 213 106 0 chr13 94079448 94079495 -7793674 - L2 LINE L2 -2025 1289 1238 2338 148 18 37 chr13 94079704 94080158 -7793011 - MER65A LTR ERV1 0 445 1 345 330 40 29 chr13 94081412 94081585 -7791584 - MER5A DNA MER1_type -14 175 1 301 315 52 73 chr13 94081640 94081715 -7791454 - MIR SINE MIR -34 228 153 2358 86 3 10 chr13 94081715 94082028 -7791141 - AluSp SINE Alu -2 311 1 301 315 52 73 chr13 94082028 94082184 -7790985 - MIR SINE MIR -109 153 2 558 287 18 77 chr13 94082692 94083184 -7789985 - L1ME4a LINE L1 -153 5968 5506 2170 130 0 3 chr13 94083929 94084228 -7788941 + AluSx SINE Alu 1 298 -14 234 0 0 0 chr13 94084616 94084642 -7788527 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 860 210 0 0 chr13 94084645 94084788 -7788381 - FRAM SINE Alu -32 144 2 23 0 0 0 chr13 94084788 94084811 -7788358 + AT_rich Low_complexity Low_complexity 1 23 0 1210 191 48 25 chr13 94085834 94086148 -7787021 + L1MA4 LINE L1 5979 6299 -1 225 182 45 0 chr13 94086161 94086205 -7786964 + L1MB8 LINE L1 6065 6110 -68 186 43 0 0 chr13 94086415 94086438 -7786731 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 29 70 0 0 chr13 94087141 94087198 -7785971 + AT_rich Low_complexity Low_complexity 1 57 0 2270 128 14 6 chr13 94087698 94088050 -7785119 - THE1A LTR MaLR 0 355 1 221 323 145 48 chr13 94088273 94088397 -7784772 - L2 LINE L2 -10 3262 3127 2008 68 0 4 chr13 94088907 94089157 -7784012 + AluY SINE Alu 28 276 -35 237 119 0 0 chr13 94089160 94089202 -7783967 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 520 228 32 32 chr13 94090710 94090868 -7782301 + L1ME4a LINE L1 5957 6114 -7 372 94 0 0 chr13 94092314 94092367 -7780802 + (A)n Simple_repeat Simple_repeat 1 53 0 285 325 117 8 chr13 94093935 94094055 -7779114 + MIR3 SINE MIR 8 140 -68 372 247 221 0 chr13 94094114 94094268 -7778901 - MIR SINE MIR -36 226 39 2497 212 57 54 chr13 94094912 94095601 -7777568 + LTR8 LTR ERV1 1 691 0 257 291 38 42 chr13 94097506 94097720 -7775449 - MIR SINE MIR -29 233 19 320 291 61 54 chr13 94098141 94098289 -7774880 - L2 LINE L2 0 3313 3165 195 42 0 0 chr13 94098517 94098541 -7774628 + (CTAAT)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr13 94099466 94099487 -7773682 + AT_rich Low_complexity Low_complexity 1 21 0 269 137 0 0 chr13 94099639 94099690 -7773479 - L1P LINE L1 -992 5154 5104 905 118 0 0 chr13 94099695 94099830 -7773339 + L1PA10 LINE L1 6034 6168 0 2135 119 7 0 chr13 94102751 94103044 -7770125 - AluSq SINE Alu -18 295 1 2023 129 0 0 chr13 94105859 94106139 -7767030 + AluSq SINE Alu 1 280 -33 834 56 24 8 chr13 94106139 94106264 -7766905 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 486 302 77 9 chr13 94106412 94106634 -7766535 - L1ME4a LINE L1 -269 5852 5616 273 229 257 9 chr13 94106751 94106860 -7766309 - L1ME LINE L1 -463 5658 5523 921 312 163 29 chr13 94107088 94108304 -7764865 + L2 LINE L2 1923 3310 -3 208 290 48 65 chr13 94110740 94110864 -7762305 - L3 LINE CR1 -12 1565 1444 536 266 161 35 chr13 94110904 94110945 -7762224 - L1ME4a LINE L1 -108 6013 5979 2445 56 3 28 chr13 94110945 94111264 -7761905 - AluY SINE Alu 0 311 1 536 266 161 35 chr13 94111264 94111564 -7761605 - L1ME4a LINE L1 -142 5979 5629 2438 70 0 19 chr13 94111690 94112006 -7761163 - AluY SINE Alu -1 310 1 22 0 0 0 chr13 94112130 94112152 -7761017 + AT_rich Low_complexity Low_complexity 1 22 0 622 227 28 28 chr13 94112177 94112353 -7760816 - MER5B DNA MER1_type 0 178 3 714 325 8 8 chr13 94112456 94112699 -7760470 + MIR SINE MIR 9 251 -11 1596 134 0 131 chr13 94114011 94114361 -7758808 - AluJo SINE Alu -6 306 3 196 204 0 0 chr13 94114376 94114420 -7758749 - L3b LINE CR1 0 1583 1540 23 0 0 0 chr13 94117130 94117153 -7756016 + AT_rich Low_complexity Low_complexity 1 23 0 223 372 74 8 chr13 94117382 94117503 -7755666 - L2 LINE L2 -220 3052 2924 206 93 0 23 chr13 94117943 94117986 -7755183 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 2668 36 0 3 chr13 94119100 94119409 -7753760 - AluY SINE Alu -3 308 1 255 122 0 0 chr13 94119492 94119541 -7753628 + (TA)n Simple_repeat Simple_repeat 1 49 0 1882 186 39 57 chr13 94120017 94120457 -7752712 - MSTB1 LTR MaLR 0 432 1 709 238 45 7 chr13 94120573 94120816 -7752353 - MLT1I LTR MaLR 0 409 83 342 0 0 0 chr13 94120927 94120965 -7752204 + (TG)n Simple_repeat Simple_repeat 2 39 0 486 165 235 0 chr13 94120965 94121080 -7752089 - MER5A DNA MER1_type -27 162 21 308 277 112 36 chr13 94122198 94122332 -7750837 - L1ME4a LINE L1 -56 6065 5943 2146 129 7 0 chr13 94122332 94122641 -7750528 + AluSx SINE Alu 1 311 -1 308 277 112 36 chr13 94122641 94122755 -7750414 - L1ME4a LINE L1 -178 5943 5798 242 317 12 125 chr13 94123038 94123259 -7749910 - L3b LINE CR1 -2 1581 1411 3970 149 38 0 chr13 94123259 94123869 -7749300 + MER41B LTR ERV1 3 635 0 242 317 12 125 chr13 94123869 94123991 -7749178 - L3b LINE CR1 -172 1411 1277 1892 115 3 34 chr13 94124814 94125109 -7748060 + AluSx SINE Alu 1 286 -26 243 246 30 153 chr13 94125119 94125322 -7747847 - MIR SINE MIR 0 262 85 268 259 18 27 chr13 94126320 94126432 -7746737 + L1ME3A LINE L1 5922 6032 -138 1489 200 137 34 chr13 94126441 94126856 -7746313 + MLT1C LTR MaLR 1 458 -9 440 256 64 8 chr13 94126867 94126992 -7746177 + L1ME3A LINE L1 6039 6170 0 21 71 0 0 chr13 94128185 94128227 -7744942 + AT_rich Low_complexity Low_complexity 1 42 0 1969 139 0 0 chr13 94128860 94129140 -7744029 + AluSx SINE Alu 1 280 -32 1244 75 6 0 chr13 94129140 94129313 -7743856 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 183 167 0 0 chr13 94129531 94129561 -7743608 - L2 LINE L2 -36 3236 3207 25 51 0 0 chr13 94131169 94131208 -7741961 + AT_rich Low_complexity Low_complexity 1 39 0 636 294 43 14 chr13 94131417 94131696 -7741473 + L1ME4a LINE L1 5541 5827 -294 243 191 96 11 chr13 94131789 94131883 -7741286 + L1ME4a LINE L1 6020 6121 0 2374 162 10 2 chr13 94132083 94132485 -7740684 - L1MC3 LINE L1 -21 7764 7360 301 255 11 85 chr13 94134172 94134266 -7738903 + L2 LINE L2 3186 3272 0 234 222 0 19 chr13 94134819 94134873 -7738296 + MIR SINE MIR 99 151 -111 * 597 293 158 0 chr13 94134869 94135084 -7738085 - MIR SINE MIR 0 262 14 190 254 51 0 chr13 94135107 94135166 -7738003 + MIR SINE MIR 144 205 -57 216 295 35 140 chr13 94135201 94135401 -7737768 - L2 LINE L2 -83 3189 3011 411 285 145 41 chr13 94135892 94136113 -7737056 - L3 LINE CR1 -28 1549 1306 612 243 164 0 chr13 94139144 94139296 -7733873 - MER45A DNA AcHobo -1 177 1 319 274 96 90 chr13 94140002 94140118 -7733051 - L1ME4a LINE L1 -192 5929 5815 1773 154 6 41 chr13 94140118 94140436 -7732733 - AluSx SINE Alu -5 307 1 319 274 96 90 chr13 94140436 94140662 -7732507 - L1ME4a LINE L1 -306 5815 5585 256 257 27 0 chr13 94141219 94141293 -7731876 + G-rich Low_complexity Low_complexity 4 79 0 302 268 94 0 chr13 94141516 94141643 -7731526 + L2 LINE L2 3170 3308 -5 920 229 214 25 chr13 94141827 94142229 -7730940 - MLT1D LTR MaLR -4 501 24 368 313 23 17 chr13 94142286 94142462 -7730707 + LTR16A LTR ERVL 111 287 -163 268 368 40 0 chr13 94143456 94143608 -7729561 + MIR SINE MIR 105 262 0 389 300 74 21 chr13 94144344 94144534 -7728635 - L1ME3A LINE L1 -9 6161 5962 279 239 106 67 chr13 94144562 94144742 -7728427 - MIR SINE MIR -48 214 28 460 312 24 39 chr13 94144948 94145153 -7728016 - MIR SINE MIR -36 226 25 288 0 0 0 chr13 94146475 94146507 -7726662 + (CA)n Simple_repeat Simple_repeat 2 33 0 2391 119 73 14 chr13 94146552 94146896 -7726273 + THE1B LTR MaLR 1 364 0 189 357 51 32 chr13 94146956 94147113 -7726056 - L2 LINE L2 -188 3084 2925 205 358 0 15 chr13 94147790 94147857 -7725312 - L2 LINE L2 -6 3266 3201 525 332 102 28 chr13 94148236 94148875 -7724294 - L2 LINE L2 -528 2786 2101 25 0 0 0 chr13 94148971 94148996 -7724173 + AT_rich Low_complexity Low_complexity 1 25 0 321 296 178 12 chr13 94149229 94149398 -7723771 - MIR SINE MIR -18 244 48 335 267 53 47 chr13 94149889 94150039 -7723130 - HAL1 LINE L1 -2244 263 113 297 51 0 0 chr13 94150046 94150085 -7723084 + (TG)n Simple_repeat Simple_repeat 1 39 0 361 326 42 21 chr13 94150987 94151131 -7722038 - HAL1b LINE L1 -1184 164 18 285 29 0 0 chr13 94151473 94151507 -7721662 + (TCC)n Simple_repeat Simple_repeat 3 36 0 1993 159 0 0 chr13 94151711 94152013 -7721156 - AluSx SINE Alu -10 302 1 662 292 20 15 chr13 94152933 94153128 -7720041 + MIR3 SINE MIR 10 205 -3 228 324 72 18 chr13 94155323 94155434 -7717735 + MIR SINE MIR 16 132 -76 411 21 0 0 chr13 94156316 94156364 -7716805 + (CA)n Simple_repeat Simple_repeat 1 48 0 1184 199 57 0 chr13 94156938 94157149 -7716020 - MER58A DNA MER1_type 0 224 2 1518 225 59 55 chr13 94157205 94157662 -7715507 + MLT1D LTR MaLR 13 471 -34 26 30 0 0 chr13 94157706 94157739 -7715430 + AT_rich Low_complexity Low_complexity 1 33 0 184 359 88 44 chr13 94158167 94158735 -7714434 + L2 LINE L2 548 1140 -2174 185 295 0 16 chr13 94158846 94158907 -7714262 - L3 LINE CR1 -389 1188 1129 266 344 112 0 chr13 94159435 94159560 -7713609 + MLT1K LTR MaLR 163 301 -287 436 308 71 28 chr13 94159631 94159813 -7713356 + MLT1K LTR MaLR 395 584 -4 1546 112 42 0 chr13 94159855 94160069 -7713100 + AluSx SINE Alu 7 229 -83 813 125 0 0 chr13 94160070 94160182 -7712987 + AluSg/x SINE Alu 175 286 -24 267 31 0 0 chr13 94160190 94160222 -7712947 + (TA)n Simple_repeat Simple_repeat 2 33 0 1557 147 71 4 chr13 94160273 94160525 -7712644 + MER47A DNA MER2_type 1 269 -97 24 0 0 0 chr13 94161359 94161383 -7711786 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr13 94161595 94161623 -7711546 + AT_rich Low_complexity Low_complexity 1 28 0 212 57 0 29 chr13 94161685 94161720 -7711449 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 42690 36 0 2 chr13 94161720 94167862 -7705307 - L1PA3 LINE L1 -24 6131 1 26 0 0 0 chr13 94167893 94167919 -7705250 + AT_rich Low_complexity Low_complexity 1 26 0 1621 198 20 3 chr13 94168394 94168687 -7704482 - AluJb SINE Alu -1 311 14 21 36 0 0 chr13 94168968 94168996 -7704173 + AT_rich Low_complexity Low_complexity 1 28 0 1727 106 4 0 chr13 94169300 94169526 -7703643 + AluSx SINE Alu 1 227 -85 2147 113 0 0 chr13 94170163 94170475 -7702694 + AluSx SINE Alu 1 312 0 484 311 116 31 chr13 94170754 94170979 -7702190 + MIR SINE MIR 19 262 0 929 344 49 21 chr13 94170981 94171406 -7701763 - L3 LINE CR1 0 1577 1141 303 308 88 44 chr13 94172377 94172604 -7700565 - L2 LINE L2 -210 3062 2826 223 371 49 21 chr13 94172713 94172856 -7700313 - L2 LINE L2 -1097 2217 2071 2119 127 0 0 chr13 94173050 94173359 -7699810 - AluSx SINE Alu 0 309 1 871 285 179 42 chr13 94173699 94174290 -7698879 + L2 LINE L2 2182 2897 -416 444 286 103 0 chr13 94174290 94174475 -7698694 + MER105 DNA DNA 1 204 0 871 285 179 42 chr13 94174475 94174628 -7698541 + L2 LINE L2 2897 3028 -285 1097 72 7 0 chr13 94174637 94174776 -7698393 + AluY SINE Alu 1 140 -171 30 27 0 0 chr13 94175344 94175381 -7697788 + AT_rich Low_complexity Low_complexity 1 37 0 4961 152 0 2 chr13 94175391 94177073 -7696096 - L1PA14 LINE L1 -9 6152 4480 420 123 0 0 chr13 94177073 94177138 -7696031 - Alu SINE Alu -8 302 238 741 114 0 32 chr13 94177431 94177554 -7695615 - L1P2 LINE L1 -414 5740 5622 * 11614 26 1 0 chr13 94177542 94179737 -7693432 + L1PA3 LINE L1 3970 6166 0 21 36 0 0 chr13 94179799 94179827 -7693342 + AT_rich Low_complexity Low_complexity 1 28 0 2166 97 3 13 chr13 94180749 94181047 -7692122 - AluSg SINE Alu -15 295 1 271 122 0 0 chr13 94181047 94181088 -7692081 + MSTA LTR MaLR 388 428 0 2790 233 29 24 chr13 94181239 94182124 -7691045 + L1P LINE L1 1917 2806 -3340 998 93 25 0 chr13 94182123 94182284 -7690885 + L1P4 LINE L1 5333 5497 -664 * 701 163 7 14 chr13 94182284 94182425 -7690744 + LTR2B LTR ERV1 351 490 0 370 73 0 0 chr13 94182425 94182480 -7690689 + L1P4 LINE L1 5442 5496 -670 1581 141 43 34 chr13 94182580 94182906 -7690263 + THE1C LTR MaLR 4 332 -43 196 306 0 48 chr13 94183345 94183407 -7689762 + L2 LINE L2 3206 3264 -8 23 0 0 0 chr13 94183806 94183829 -7689340 + AT_rich Low_complexity Low_complexity 1 23 0 313 305 0 0 chr13 94185123 94185205 -7687964 + MER5A DNA MER1_type 9 90 -99 2082 71 0 8 chr13 94186527 94186793 -7686376 - AluY SINE Alu -8 303 40 263 234 26 0 chr13 94188216 94188293 -7684876 + (TA)n Simple_repeat Simple_repeat 1 79 0 508 194 31 0 chr13 94188475 94188573 -7684596 - MER20 DNA MER1_type -118 101 1 290 316 124 53 chr13 94188863 94189088 -7684081 + L3 LINE CR1 897 1137 -440 185 343 57 19 chr13 94189188 94189293 -7683876 + L3 LINE CR1 1454 1562 -15 512 128 58 0 chr13 94190590 94190676 -7682493 - L1PA11 LINE L1 -7 6167 6077 355 242 11 0 chr13 94190677 94190772 -7682397 - L1PA8A LINE L1 -95 6036 5941 639 168 233 25 chr13 94190990 94191192 -7681977 - MER5C DNA MER1_type -11 313 70 681 239 0 0 chr13 94191460 94191594 -7681575 - AluJo SINE Alu -178 134 1 666 340 76 35 chr13 94192097 94192559 -7680610 - L3 LINE CR1 -1062 515 35 199 257 0 0 chr13 94192941 94192976 -7680193 + L2 LINE L2 3152 3186 -86 22 0 0 0 chr13 94193896 94193918 -7679251 + AT_rich Low_complexity Low_complexity 1 22 0 1850 87 0 8 chr13 94196211 94196452 -7676717 + AluSx SINE Alu 62 300 -12 385 151 11 32 chr13 94197360 94197453 -7675716 - L1MB8 LINE L1 -214 5964 5874 323 174 81 35 chr13 94197473 94197559 -7675610 + L1M4b LINE L1 1553 1642 -5217 2034 166 25 112 chr13 94197559 94198160 -7675009 - L1MB8 LINE L1 -319 5865 5317 782 259 72 16 chr13 94198159 94198587 -7674582 - L1M4 LINE L1 -4857 1685 1234 * 3482 192 35 18 chr13 94198587 94198966 -7674203 - L1MB1 LINE L1 0 6979 6608 417 66 0 0 chr13 94198966 94199027 -7674142 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 3482 192 35 18 chr13 94199027 94199738 -7673431 - L1MB1 LINE L1 -371 6608 5868 841 191 43 119 chr13 94199797 94199992 -7673177 - L1MB1 LINE L1 -6582 277 108 2411 90 0 0 chr13 94199992 94200302 -7672867 - AluY SINE Alu -1 310 1 841 191 43 119 chr13 94200302 94200383 -7672786 - L1MB1 LINE L1 -6751 108 22 3830 131 153 21 chr13 94201548 94201766 -7671403 + Tigger3(Golem) DNA MER2_type 1 189 -2840 1765 176 0 0 chr13 94201766 94202061 -7671108 - AluSx SINE Alu 0 312 18 3830 131 153 21 chr13 94202061 94202920 -7670249 + Tigger3(Golem) DNA MER2_type 189 3029 0 363 105 0 0 chr13 94202923 94202980 -7670189 + (TG)n Simple_repeat Simple_repeat 2 58 0 208 355 0 0 chr13 94203217 94203279 -7669890 + MER5A DNA MER1_type 9 70 -119 5195 82 11 0 chr13 94203381 94204184 -7668985 - L1PA8A LINE L1 -121 6010 5200 513 300 66 38 chr13 94204777 94205064 -7668105 + LTR16C LTR ERVL 197 491 0 207 316 89 25 chr13 94205458 94205537 -7667632 - L2 LINE L2 -5 3267 3184 369 182 0 71 chr13 94206766 94206865 -7666304 + MLT1A2 LTR MaLR 9 100 -274 1563 193 13 13 chr13 94206952 94207257 -7665912 - AluJo SINE Alu -7 305 1 207 206 11 33 chr13 94207299 94207391 -7665778 + (TATATG)n Simple_repeat Simple_repeat 2 91 0 2555 122 17 0 chr13 94209515 94209918 -7663251 + L1PA10 LINE L1 5682 6091 -77 494 207 0 0 chr13 94209918 94210000 -7663169 + AluJb SINE Alu 169 250 -62 1298 163 0 0 chr13 94210000 94210196 -7662973 + AluSg/x SINE Alu 83 278 -32 985 49 14 21 chr13 94210196 94210340 -7662829 + (GAAA)n Simple_repeat Simple_repeat 3 145 0 218 160 20 0 chr13 94210340 94210390 -7662779 + GA-rich Low_complexity Low_complexity 1 51 0 782 158 28 8 chr13 94210406 94210653 -7662516 + GA-rich Low_complexity Low_complexity 1 252 0 23 33 0 0 chr13 94212270 94212300 -7660869 + AT_rich Low_complexity Low_complexity 1 30 0 1478 230 36 47 chr13 94213661 94214033 -7659136 - L1ME2 LINE L1 -15 6149 5783 4821 86 9 9 chr13 94214033 94214056 -7659113 - L1PA10 LINE L1 0 6168 6146 180 0 0 0 chr13 94214056 94214076 -7659093 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 4821 86 9 9 chr13 94214076 94214726 -7658443 - L1PA10 LINE L1 -21 6147 5495 1478 230 36 47 chr13 94214726 94214909 -7658260 - L1ME2 LINE L1 -381 5783 5600 457 362 70 5 chr13 94214925 94215110 -7658059 - MIR SINE MIR -49 213 17 915 267 136 28 chr13 94215387 94215821 -7657348 - L2 LINE L2 0 3313 2833 1556 146 70 64 chr13 94216054 94216250 -7656919 - MER7A DNA MER2_type -2692 346 148 1273 73 79 0 chr13 94216250 94216427 -7656742 + L1PA5 LINE L1 5964 6154 0 1556 146 70 64 chr13 94216427 94216573 -7656596 - MER7A DNA MER2_type -2890 148 4 438 100 75 0 chr13 94217296 94217376 -7655793 - L1MA10 LINE L1 -14 6320 6235 23 33 0 0 chr13 94217460 94217490 -7655679 + AT_rich Low_complexity Low_complexity 1 30 0 2288 100 3 0 chr13 94218508 94218818 -7654351 - AluSx SINE Alu -1 311 1 2167 82 3 63 chr13 94219736 94220067 -7653102 - AluY SINE Alu 0 311 1 416 343 6 0 chr13 94220752 94220921 -7652248 + MLT1F-int LTR MaLR 433 602 -769 5372 54 6 1 chr13 94221114 94221823 -7651346 + L1PA5 LINE L1 5470 6154 0 255 263 26 26 chr13 94221925 94222001 -7651168 + MLT1F-int LTR MaLR 789 864 -507 262 259 0 107 chr13 94222138 94222250 -7650919 + MLT1F-int LTR MaLR 968 1067 -304 610 288 0 0 chr13 94222559 94222719 -7650450 + MLT1F LTR MaLR 3 162 -405 257 122 0 0 chr13 94222723 94222764 -7650405 - MLT2B2 LTR ERVL -8 512 472 714 112 0 0 chr13 94222830 94222937 -7650232 - MLT2B2 LTR ERVL -408 107 1 26831 188 45 20 chr13 94222939 94223253 -7649916 - ERVL-B2 LTR ERVL -9 5755 5450 180 111 0 0 chr13 94223253 94223280 -7649889 + (TA)n Simple_repeat Simple_repeat 1 27 0 26831 188 45 20 chr13 94223280 94223799 -7649370 - ERVL-B2 LTR ERVL -314 5450 4945 2126 133 0 3 chr13 94223799 94224101 -7649068 + AluSx SINE Alu 1 301 -11 26831 188 45 20 chr13 94224101 94228240 -7644929 - ERVL-B2 LTR ERVL -819 4945 627 2112 145 7 0 chr13 94228240 94228544 -7644625 + AluSx SINE Alu 1 306 -6 26831 188 45 20 chr13 94228544 94229186 -7643983 - ERVL-B2 LTR ERVL -5137 627 2 235 133 22 0 chr13 94229187 94229232 -7643937 - ERVL-B2 LTR ERVL 0 397 352 230 191 0 16 chr13 94229234 94229297 -7643872 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 221 120 40 0 chr13 94229328 94229378 -7643791 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 1512 200 26 13 chr13 94229384 94229792 -7643377 - MLT2B2 LTR ERVL -57 458 1 898 258 64 11 chr13 94229792 94230075 -7643094 + MLT1F LTR MaLR 149 446 -96 1937 240 26 35 chr13 94230091 94230633 -7642536 - MLT1F LTR MaLR -5 537 1 345 179 0 36 chr13 94230633 94230714 -7642455 + MLT1F LTR MaLR 465 542 0 192 298 75 43 chr13 94232720 94232814 -7640355 - MIR SINE MIR -159 103 7 931 212 9 36 chr13 94233196 94233418 -7639751 - MER20 DNA MER1_type -3 216 1 1531 198 83 45 chr13 94233935 94234109 -7639060 + MLT1C LTR MaLR 6 172 -295 1991 143 0 31 chr13 94234109 94234431 -7638738 + AluSx SINE Alu 1 312 0 1531 198 83 45 chr13 94234431 94234701 -7638468 + MLT1C LTR MaLR 172 467 0 225 302 83 10 chr13 94235338 94235434 -7637735 + MIR SINE MIR 25 127 -135 21 0 0 0 chr13 94236465 94236486 -7636683 + AT_rich Low_complexity Low_complexity 1 21 0 1761 164 0 0 chr13 94237342 94237611 -7635558 - AluSx SINE Alu -17 295 27 287 336 26 0 chr13 94238227 94238340 -7634829 - L2 LINE L2 -40 3273 3158 381 392 48 0 chr13 94239210 94239437 -7633732 + MIR SINE MIR 2 239 -23 22 56 0 0 chr13 94240069 94240105 -7633064 + AT_rich Low_complexity Low_complexity 1 36 0 1673 194 0 28 chr13 94240188 94240507 -7632662 + AluJb SINE Alu 3 312 0 552 259 8 8 chr13 94240520 94240651 -7632518 + FLAM_A SINE Alu 1 131 -2 1324 228 74 15 chr13 94240940 94241334 -7631835 - MLT1C LTR MaLR 0 467 51 1604 135 117 8 chr13 94241452 94241718 -7631451 - AluSg1 SINE Alu -14 295 1 225 309 28 101 chr13 94243152 94243330 -7629839 + L2 LINE L2 2913 3077 -195 2101 119 29 35 chr13 94243343 94243720 -7629449 + THE1C LTR MaLR 1 375 0 236 291 118 45 chr13 94243787 94243897 -7629272 + L2 LINE L2 3194 3311 -2 247 261 15 0 chr13 94244663 94244728 -7628441 - MER63 DNA MER1_type -307 755 690 23 0 0 0 chr13 94244732 94244755 -7628414 + GC_rich Low_complexity Low_complexity 1 23 0 629 271 30 55 chr13 94245047 94245283 -7627886 + MIR SINE MIR 31 260 -2 1853 164 67 3 chr13 94245283 94245624 -7627545 + MER47A DNA MER2_type 4 366 0 962 233 175 31 chr13 94245637 94246088 -7627081 - L1MC4a LINE L1 0 7808 7293 1354 162 41 145 chr13 94246112 94246529 -7626640 + MSTB LTR MaLR 8 372 -54 2203 132 0 0 chr13 94246529 94246832 -7626337 + AluSg SINE Alu 1 303 -7 1354 162 41 145 chr13 94246832 94246882 -7626287 + MSTB LTR MaLR 372 426 0 325 270 95 36 chr13 94246889 94247026 -7626143 - L1MC4a LINE L1 -538 7270 7126 772 201 47 14 chr13 94248256 94248470 -7624699 - L1MA4 LINE L1 0 6300 6080 474 237 233 17 chr13 94250538 94250770 -7622399 - MLT1H LTR MaLR -182 367 86 2102 143 0 3 chr13 94250988 94251281 -7621888 - AluSx SINE Alu -20 292 1 2122 107 10 0 chr13 94251620 94251911 -7621258 + AluSx SINE Alu 1 294 -18 2684 98 69 2 chr13 94252074 94252481 -7620688 - MER57B LTR ERV1 0 434 1 402 283 108 6 chr13 94252964 94253130 -7620039 - MIR SINE MIR -65 197 15 2788 160 148 5 chr13 94253195 94253782 -7619387 + LTR51 LTR ERV1 1 671 0 1826 166 0 16 chr13 94253900 94254207 -7618962 + AluJo SINE Alu 1 302 -10 367 328 52 6 chr13 94256567 94256741 -7616428 - MIR SINE MIR -2 260 79 1993 131 10 0 chr13 94257106 94257396 -7615773 - AluSg SINE Alu -11 299 7 1067 208 40 15 chr13 94257430 94257704 -7615465 + MER39 LTR ERV1 407 687 -20 852 226 145 58 chr13 94257846 94258314 -7614855 - MER39 LTR ERV1 -25 682 6 2853 117 9 5 chr13 94258527 94258963 -7614206 + L1PB1 LINE L1 5709 6146 -5 257 321 0 36 chr13 94259128 94259212 -7613957 + MIR SINE MIR 44 124 -138 245 326 23 69 chr13 94259274 94259449 -7613720 + MIR SINE MIR 96 262 0 530 153 189 0 chr13 94259584 94259695 -7613474 + MER3 DNA MER1_type 1 132 -77 379 151 0 86 chr13 94260431 94260469 -7612700 + MER3 DNA MER1_type 125 165 -44 2220 109 10 3 chr13 94260469 94260771 -7612398 - AluSx SINE Alu -8 304 1 379 151 0 86 chr13 94260771 94260825 -7612344 + MER3 DNA MER1_type 165 209 0 258 224 0 0 chr13 94260782 94260831 -7612338 - MER3 DNA MER1_type -119 90 42 * 626 251 46 3 chr13 94260992 94261236 -7611933 + LTR37A LTR ERV1 195 455 -13 1788 126 3 86 chr13 94261248 94261573 -7611596 + AluSx SINE Alu 5 302 -10 2619 45 0 3 chr13 94262834 94263143 -7610026 + AluY SINE Alu 1 308 -3 384 320 88 0 chr13 94264142 94264289 -7608880 + MIR SINE MIR 31 190 -72 2263 118 0 0 chr13 94264485 94264791 -7608378 + AluSx SINE Alu 1 306 -6 272 333 99 40 chr13 94265243 94265444 -7607725 - LTR33 LTR ERVL -236 285 73 27 49 0 0 chr13 94265900 94265941 -7607228 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 94266217 94266249 -7606920 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr13 94266939 94266976 -7606193 + AT_rich Low_complexity Low_complexity 1 37 0 216 0 0 0 chr13 94267725 94267749 -7605420 + (T)n Simple_repeat Simple_repeat 1 24 0 1552 132 4 16 chr13 94267970 94268220 -7604949 + AluSx SINE Alu 4 250 -62 2719 109 67 0 chr13 94268430 94268832 -7604337 - MER57B LTR ERV1 0 434 6 395 283 108 6 chr13 94269320 94269486 -7603683 - MIR SINE MIR -65 197 15 2995 166 150 3 chr13 94269551 94270136 -7603033 + LTR51 LTR ERV1 1 671 0 1753 172 0 19 chr13 94270254 94270562 -7602607 + AluJo SINE Alu 1 302 -10 340 328 52 6 chr13 94272922 94273096 -7600073 - MIR SINE MIR -2 260 79 260 244 267 0 chr13 94273225 94273315 -7599854 + MER34 LTR ERV1 1 114 -428 1221 214 126 90 chr13 94273316 94273461 -7599708 + MER39 LTR ERV1 218 356 -351 1982 131 10 0 chr13 94273461 94273751 -7599418 - AluSg SINE Alu -11 299 7 1221 214 126 90 chr13 94273751 94274059 -7599110 + MER39 LTR ERV1 356 687 -20 1033 229 167 48 chr13 94274201 94274669 -7598500 - MER39 LTR ERV1 -25 682 6 3078 117 9 5 chr13 94274882 94275318 -7597851 + L1PB1 LINE L1 5709 6146 -5 249 321 0 36 chr13 94275483 94275567 -7597602 + MIR SINE MIR 44 124 -138 231 326 23 69 chr13 94275629 94275804 -7597365 + MIR SINE MIR 96 262 0 584 153 189 0 chr13 94275939 94276050 -7597119 + MER3 DNA MER1_type 1 132 -77 418 151 0 86 chr13 94276786 94276824 -7596345 + MER3 DNA MER1_type 125 165 -44 2212 109 10 3 chr13 94276824 94277126 -7596043 - AluSx SINE Alu -8 304 1 418 151 0 86 chr13 94277126 94277180 -7595989 + MER3 DNA MER1_type 165 209 0 277 224 0 0 chr13 94277137 94277186 -7595983 - MER3 DNA MER1_type -119 90 42 * 714 263 49 39 chr13 94277305 94277590 -7595579 + LTR37A LTR ERV1 126 413 -13 1773 126 3 86 chr13 94277602 94277927 -7595242 + AluSx SINE Alu 5 302 -10 2419 92 0 0 chr13 94279188 94279494 -7593675 + AluSg SINE Alu 1 306 -4 270 304 109 50 chr13 94279945 94280146 -7593023 - LTR33 LTR ERVL -236 285 73 27 49 0 0 chr13 94280602 94280643 -7592526 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr13 94280919 94280951 -7592218 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr13 94281641 94281678 -7591491 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr13 94282428 94282453 -7590716 + (T)n Simple_repeat Simple_repeat 1 25 0 2224 113 3 0 chr13 94282673 94282973 -7590196 + AluSx SINE Alu 4 304 -8 2213 111 0 22 chr13 94283558 94283873 -7589296 + AluSx SINE Alu 1 308 -4 216 0 0 0 chr13 94284612 94284636 -7588533 + (T)n Simple_repeat Simple_repeat 1 24 0 231 313 130 15 chr13 94285076 94285207 -7587962 - L2 LINE L2 0 3313 3168 1898 100 8 0 chr13 94285938 94286188 -7586981 + AluSx SINE Alu 59 310 -2 584 292 87 20 chr13 94286341 94286536 -7586633 - MIR SINE MIR -8 254 47 336 24 0 0 chr13 94286587 94286628 -7586541 + (CAT)n Simple_repeat Simple_repeat 2 42 0 912 241 19 51 chr13 94286642 94286752 -7586417 - MIR SINE MIR -11 251 139 2431 115 95 23 chr13 94286752 94286793 -7586376 - MSTA LTR MaLR 0 428 391 2275 95 3 7 chr13 94286793 94287097 -7586072 + AluSq SINE Alu 1 303 -10 2431 115 95 23 chr13 94287097 94287454 -7585715 - MSTA LTR MaLR -37 391 1 912 241 19 51 chr13 94287454 94287600 -7585569 - MIR SINE MIR -123 139 3 286 379 35 0 chr13 94287601 94287770 -7585399 - L2 LINE L2 -959 2355 2181 1891 159 3 0 chr13 94288440 94288736 -7584433 - AluSx SINE Alu -1 311 15 1876 129 14 134 chr13 94288880 94289306 -7583863 + THE1C LTR MaLR 1 375 0 2437 93 0 0 chr13 94289568 94289878 -7583291 - AluY SINE Alu -1 310 1 2357 87 0 3 chr13 94290119 94290418 -7582751 - AluSq SINE Alu -15 298 1 246 62 0 0 chr13 94291567 94291599 -7581570 + (TCTCTG)n Simple_repeat Simple_repeat 5 36 0 283 234 65 78 chr13 94292639 94292793 -7580376 + HAL1 LINE L1 2247 2398 -109 233 0 62 0 chr13 94293212 94293244 -7579925 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 316 261 109 29 chr13 94293436 94293574 -7579595 + MIR SINE MIR 111 259 -3 288 53 0 0 chr13 94294243 94294281 -7578888 + (CA)n Simple_repeat Simple_repeat 2 39 0 28 48 0 0 chr13 94294374 94294416 -7578753 + AT_rich Low_complexity Low_complexity 1 42 0 462 214 47 157 chr13 94295040 94295560 -7577609 - MER45 DNA AcHobo -428 525 77 1215 223 17 88 chr13 94296280 94296698 -7576471 - MLT1B LTR MaLR -2 388 1 2175 105 0 23 chr13 94296702 94297006 -7576163 - AluSx SINE Alu -15 297 1 210 71 0 0 chr13 94297074 94297102 -7576067 + (A)n Simple_repeat Simple_repeat 1 28 0 2717 98 20 27 chr13 94298859 94299345 -7573824 - MER1A DNA MER1_type -5 524 1 376 340 13 20 chr13 94299478 94299628 -7573541 + MER5A DNA MER1_type 2 150 -39 1114 244 109 26 chr13 94299659 94299971 -7573198 - MER58B DNA MER1_type 0 341 4 2086 131 0 0 chr13 94300433 94300724 -7572445 - AluSx SINE Alu -21 291 1 197 256 50 91 chr13 94302183 94302304 -7570865 + MIR SINE MIR 24 139 -123 185 327 106 19 chr13 94302322 94302426 -7570743 - MER5A DNA MER1_type 0 189 77 340 248 95 19 chr13 94302426 94302531 -7570638 + MER77 LTR ERV1 42 154 -451 435 254 66 62 chr13 94302749 94302974 -7570195 + MER77 LTR ERV1 462 729 -4 815 104 15 67 chr13 94303051 94303186 -7569983 + FLAM_C SINE Alu 2 129 -14 464 322 99 24 chr13 94303581 94303963 -7569206 - L1ME3 LINE L1 -282 5880 5470 466 297 111 18 chr13 94303977 94304310 -7568859 - L1ME3 LINE L1 -783 5363 5000 1425 133 130 65 chr13 94304585 94304878 -7568291 - AluJb SINE Alu 0 312 1 615 165 0 0 chr13 94305012 94305097 -7568072 - AluJ/FLAM SINE Alu -226 86 2 247 314 102 37 chr13 94305099 94305344 -7567825 - L1ME3 LINE L1 -1920 4226 3966 293 326 69 27 chr13 94305361 94305885 -7567284 - L1ME3 LINE L1 -2386 3760 3215 1918 129 0 0 chr13 94305905 94306199 -7566970 - AluSq SINE Alu 0 315 22 239 167 0 56 chr13 94306199 94306253 -7566916 - AluSp SINE Alu -133 170 120 2163 107 3 0 chr13 94306330 94306628 -7566541 - AluY SINE Alu -12 299 1 955 279 35 80 chr13 94306876 94307584 -7565585 - L1MC5 LINE L1 -724 7237 6535 252 0 0 0 chr13 94307756 94307784 -7565385 + (TA)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr13 94307783 94307807 -7565362 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 1186 296 86 10 chr13 94307807 94308310 -7564859 - L1MC5 LINE L1 -1884 5924 5384 225 356 89 4 chr13 94308310 94308591 -7564578 - L1MC5 LINE L1 -3621 2525 2221 1734 179 34 3 chr13 94308882 94309173 -7563996 - AluJb SINE Alu -12 300 1 352 256 32 0 chr13 94309269 94309383 -7563786 - L1PA15-16 LINE L1 -965 2245 2143 23 0 0 0 chr13 94309861 94309884 -7563285 + AT_rich Low_complexity Low_complexity 1 23 0 1991 106 8 4 chr13 94310722 94310987 -7562182 - AluSq SINE Alu -47 266 1 2062 134 3 0 chr13 94311395 94311685 -7561484 + AluSx SINE Alu 5 295 -17 189 107 0 0 chr13 94311728 94311756 -7561413 + (CA)n Simple_repeat Simple_repeat 1 28 0 252 192 0 0 chr13 94311826 94311878 -7561291 - L1ME LINE L1 -301 5820 5769 307 141 0 3 chr13 94312636 94312690 -7560479 - MLT2F LTR ERVL 0 663 345 203 125 25 0 chr13 94312692 94312732 -7560437 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 587 228 95 109 chr13 94312740 94313087 -7560082 - MLT2C1 LTR ERVL -54 343 2 290 323 68 31 chr13 94314038 94314199 -7558970 + MIR3 SINE MIR 28 194 -14 2051 138 0 3 chr13 94314582 94314872 -7558297 + AluSx SINE Alu 1 289 -23 234 278 72 41 chr13 94316377 94316474 -7556695 + MER5A DNA MER1_type 71 170 -19 195 129 0 0 chr13 94317536 94317567 -7555602 + (A)n Simple_repeat Simple_repeat 1 31 0 310 262 164 25 chr13 94318354 94318476 -7554693 - L2 LINE L2 -1 3271 3133 180 314 109 45 chr13 94318668 94318888 -7554281 + MIR SINE MIR 14 247 -15 225 304 14 14 chr13 94319502 94319571 -7553598 + L2 LINE L2 3201 3269 -3 1999 146 63 28 chr13 94320801 94321163 -7552006 - THE1C LTR MaLR 0 375 1 763 334 84 61 chr13 94321395 94322305 -7550864 + L2 LINE L2 295 1237 -2077 2357 89 0 0 chr13 94322305 94322598 -7550571 + AluSg SINE Alu 1 293 -17 763 334 84 61 chr13 94322598 94322776 -7550393 + L2 LINE L2 1237 1409 -1905 460 268 10 0 chr13 94323050 94323147 -7550022 + MIR SINE MIR 3 100 -162 261 268 109 54 chr13 94323147 94323588 -7549581 - HAL1 LINE L1 -1164 1343 879 491 353 108 0 chr13 94324395 94324599 -7548570 - MIR SINE MIR -16 246 21 1793 154 3 7 chr13 94324873 94325165 -7548004 + AluJb SINE Alu 1 291 -21 346 200 256 40 chr13 94325219 94325344 -7547825 - MER53 DNA DNA 0 189 38 265 340 73 21 chr13 94325368 94325559 -7547610 + L3 LINE CR1 808 1008 -569 217 364 102 34 chr13 94325569 94325745 -7547424 + MER5A DNA MER1_type 2 189 0 441 314 139 36 chr13 94325838 94326169 -7547000 + L3 LINE CR1 1128 1492 -85 206 81 27 0 chr13 94326488 94326525 -7546644 + (CCCCG)n Simple_repeat Simple_repeat 2 39 0 197 148 0 19 chr13 94327632 94327686 -7545483 + (CGGGGG)n Simple_repeat Simple_repeat 6 58 0 375 289 0 37 chr13 94327726 94327861 -7545308 + G-rich Low_complexity Low_complexity 5 134 0 23 0 0 0 chr13 94329023 94329046 -7544123 + AT_rich Low_complexity Low_complexity 1 23 0 228 111 0 0 chr13 94330830 94330866 -7542303 + (T)n Simple_repeat Simple_repeat 1 36 0 294 50 0 0 chr13 94331333 94331373 -7541796 + (TG)n Simple_repeat Simple_repeat 1 40 0 1986 90 56 0 chr13 94331936 94332222 -7540947 + AluSc SINE Alu 1 301 0 184 276 26 112 chr13 94332322 94332474 -7540695 - L2 LINE L2 -841 2473 2335 199 91 23 23 chr13 94332732 94332776 -7540393 + (TAAAAA)n Simple_repeat Simple_repeat 3 46 0 204 333 34 64 chr13 94333560 94333827 -7539342 - L2 LINE L2 -1358 1956 1698 1356 182 17 104 chr13 94333909 94334311 -7538858 - MLT1A2 LTR MaLR -7 367 1 3939 214 46 68 chr13 94334311 94335901 -7537268 - MLT1A1-int LTR MaLR 0 1735 1 1778 161 121 15 chr13 94335901 94336231 -7536938 - MLT1A1 LTR MaLR 0 365 1 2321 99 13 0 chr13 94336563 94336867 -7536302 + AluSx SINE Alu 1 308 -4 499 288 73 5 chr13 94337141 94337332 -7535837 + MIR SINE MIR 59 262 0 236 306 62 124 chr13 94337383 94337674 -7535495 + L2 LINE L2 2944 3216 -56 1961 170 0 0 chr13 94337845 94338156 -7535013 - AluSx SINE Alu -1 311 1 211 247 13 13 chr13 94339149 94339226 -7533943 + (TTA)n Simple_repeat Simple_repeat 2 78 0 43468 37 21 1 chr13 94339360 94345391 -7527778 - L1PA2 LINE L1 0 6155 1 5255 105 8 12 chr13 94345684 94346416 -7526753 + L1PA14 LINE L1 5431 6159 -2 213 219 0 0 chr13 94347121 94347162 -7526007 + CT-rich Low_complexity Low_complexity 2 42 0 219 36 0 0 chr13 94350833 94350861 -7522308 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2208 144 18 18 chr13 94351747 94352080 -7521089 - MER1B DNA MER1_type -4 333 1 1422 245 33 16 chr13 94352315 94352698 -7520471 + MLT2D LTR ERVL 1 444 -20 255 200 0 0 chr13 94352727 94352772 -7520397 + MLT2D LTR ERVL 367 411 -3 1570 186 29 0 chr13 94353697 94353977 -7519192 - AluJo SINE Alu -24 288 1 2220 105 7 0 chr13 94353989 94354284 -7518885 - AluSp SINE Alu -15 298 2 23 33 0 0 chr13 94354904 94354934 -7518235 + AT_rich Low_complexity Low_complexity 1 30 0 836 144 0 0 chr13 94355323 94355462 -7517707 + L1MA8 LINE L1 6003 6141 -150 341 189 27 23 chr13 94355463 94355731 -7517438 + (TA)n Simple_repeat Simple_repeat 1 269 0 1433 144 44 4 chr13 94355829 94356058 -7517111 + AluSx SINE Alu 43 280 -32 201 108 0 0 chr13 94356058 94356095 -7517074 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 247 257 53 26 chr13 94356315 94356428 -7516741 + L1ME LINE L1 5704 5819 -302 529 296 25 58 chr13 94356513 94356756 -7516413 + MIR SINE MIR 18 252 -10 396 82 0 0 chr13 94356798 94356859 -7516310 + (TG)n Simple_repeat Simple_repeat 1 61 0 802 298 167 28 chr13 94357039 94357952 -7515217 + L2 LINE L2 2262 3312 -1 882 136 100 0 chr13 94357981 94358121 -7515048 - AluSg/x SINE Alu -20 292 139 204 219 0 0 chr13 94358516 94358557 -7514612 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 372 251 85 57 chr13 94360393 94360771 -7512398 - L1MC/D LINE L1 -689 5473 5265 1990 146 30 0 chr13 94360792 94361093 -7512076 - AluSx SINE Alu -2 310 1 388 345 105 23 chr13 94361121 94361353 -7511816 - L1MC/D LINE L1 -903 5243 4965 300 27 0 0 chr13 94361353 94361390 -7511779 + (TG)n Simple_repeat Simple_repeat 2 38 0 388 345 105 23 chr13 94361390 94361546 -7511623 - L1MC/D LINE L1 -1181 4965 4823 1966 150 19 3 chr13 94362694 94363001 -7510168 + AluJb SINE Alu 1 312 0 2078 131 20 3 chr13 94363042 94363348 -7509821 + AluSq SINE Alu 1 311 -2 279 176 200 47 chr13 94363377 94363462 -7509707 + MER5A DNA MER1_type 4 101 -88 923 226 56 52 chr13 94364012 94364457 -7508712 - MLT1D LTR MaLR -3 502 22 30 0 0 0 chr13 94364804 94364834 -7508335 + AT_rich Low_complexity Low_complexity 1 30 0 1439 203 127 19 chr13 94366250 94366668 -7506501 - MLT1C LTR MaLR -2 465 3 226 333 0 0 chr13 94366796 94366862 -7506307 - MIR3 SINE MIR -5 203 138 180 310 0 0 chr13 94367019 94367106 -7506063 + (TA)n Simple_repeat Simple_repeat 2 88 0 650 218 31 52 chr13 94368489 94368682 -7504487 - MER5A DNA MER1_type 0 189 1 410 167 24 0 chr13 94368843 94368927 -7504242 - MER53 DNA DNA -1 188 103 31 26 0 0 chr13 94369832 94369870 -7503299 + AT_rich Low_complexity Low_complexity 1 38 0 2395 96 0 10 chr13 94370053 94370366 -7502803 + AluSq SINE Alu 1 310 -3 759 292 122 10 chr13 94370904 94371456 -7501713 + L2 LINE L2 1808 2482 -832 510 271 90 43 chr13 94371463 94371718 -7501451 + L2 LINE L2 3047 3313 0 3577 128 6 9 chr13 94372200 94372729 -7500440 + MER1A DNA MER1_type 1 527 0 1284 211 113 4 chr13 94373254 94373529 -7499640 - AluJb SINE Alu -7 305 1 1694 216 10 8 chr13 94423695 94424084 -7449085 - L1 LINE L1 -1061 5085 4696 191 342 0 0 chr13 94424084 94424160 -7449009 - MIR SINE MIR -31 231 156 362 226 75 0 chr13 94424169 94424262 -7448907 - MLT1K LTR MaLR -7 581 482 380 66 0 16 chr13 94424290 94424351 -7448818 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 352 350 57 8 chr13 94425230 94425581 -7447588 - L1ME4a LINE L1 -252 5869 5502 3207 97 24 28 chr13 94425598 94426092 -7447077 + LTR22B LTR ERVK 1 492 0 1913 136 0 42 chr13 94426361 94426671 -7446498 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr13 94427808 94427838 -7445331 + AT_rich Low_complexity Low_complexity 1 30 0 348 57 0 57 chr13 94430402 94430455 -7442714 + MADE1 DNA Mariner 31 80 0 22 0 0 0 chr13 94430472 94430494 -7442675 + AT_rich Low_complexity Low_complexity 1 22 0 1180 245 71 51 chr13 94431085 94431618 -7441551 + MLT1E2 LTR MaLR 52 624 0 366 261 19 70 chr13 94431618 94431676 -7441493 + MLT1E2-int LTR MaLR 1 60 -1311 2216 96 0 0 chr13 94431676 94431985 -7441184 + AluSc SINE Alu 1 309 0 366 261 19 70 chr13 94431985 94432082 -7441087 + MLT1E2-int LTR MaLR 60 149 -1222 365 167 18 149 chr13 94432084 94432198 -7440971 - Tigger7 DNA MER2_type 0 2491 2393 * 1333 220 0 8 chr13 94432196 94432437 -7440732 - Tigger7 DNA MER2_type -2220 267 29 584 223 0 0 chr13 94432437 94432549 -7440620 + MLT1E2-int LTR MaLR 403 514 -857 27 0 0 0 chr13 94432619 94432646 -7440523 + AT_rich Low_complexity Low_complexity 1 27 0 1522 206 42 63 chr13 94433028 94433503 -7439666 - MLT1C LTR MaLR 0 467 3 822 47 0 9 chr13 94434148 94434254 -7438915 - L1PA7 LINE L1 -1 6153 6049 732 134 0 0 chr13 94434262 94434374 -7438795 + AluSc SINE Alu 197 308 -1 4565 67 0 0 chr13 94434443 94435023 -7438146 - L1PA7 LINE L1 -106 6048 5469 1802 147 17 14 chr13 94435773 94436066 -7437103 + AluJb SINE Alu 1 294 -18 387 41 0 0 chr13 94436069 94436118 -7437051 + (CA)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chr13 94436344 94436370 -7436799 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr13 94437677 94437698 -7435471 + AT_rich Low_complexity Low_complexity 1 21 0 765 91 0 0 chr13 94438232 94438342 -7434827 - L1MA3 LINE L1 0 6305 6196 1015 237 68 24 chr13 94438342 94438679 -7434490 + MLT1C LTR MaLR 62 413 -54 2774 117 39 4 chr13 94438712 94439173 -7433996 - L1MA3 LINE L1 0 6305 5829 275 270 0 0 chr13 94439496 94439570 -7433599 + LTR16A LTR ERVL 192 265 -185 240 224 0 172 chr13 94439919 94439983 -7433186 + MIR SINE MIR 149 180 -82 2544 50 0 7 chr13 94439983 94440284 -7432885 + AluY SINE Alu 1 299 -12 240 224 0 172 chr13 94440284 94440353 -7432816 + MIR SINE MIR 180 259 -3 413 181 48 76 chr13 94440400 94440505 -7432664 + L1MA3 LINE L1 4125 4226 -1920 40 21 0 0 chr13 94440510 94440557 -7432612 + AT_rich Low_complexity Low_complexity 1 47 0 5833 150 11 29 chr13 94440567 94441390 -7431779 + L1MA3 LINE L1 4211 5047 -1258 1984 125 17 0 chr13 94441390 94441678 -7431491 + AluSx SINE Alu 1 293 -19 5833 150 11 29 chr13 94441678 94442284 -7430885 + L1MA3 LINE L1 5047 5599 -706 2356 80 0 6 chr13 94442284 94442597 -7430572 + AluY SINE Alu 1 311 0 5833 150 11 29 chr13 94442597 94442996 -7430173 + L1MA3 LINE L1 5599 6003 -302 312 52 6 19 chr13 94442996 94443057 -7430112 - Alu SINE Alu -261 38 1 1918 168 0 0 chr13 94443073 94443371 -7429798 - AluSx SINE Alu -14 298 1 229 348 35 64 chr13 94443884 94444025 -7429144 + MIR SINE MIR 124 260 -2 10519 213 51 23 chr13 94444133 94447041 -7426128 - L1M4c LINE L1 -807 6758 3770 331 188 2 148 chr13 94447237 94447435 -7425734 - L1M4c LINE L1 -3876 3689 3517 457 226 18 150 chr13 94447467 94447808 -7425361 - L1M4c LINE L1 -4481 3086 2791 648 272 96 50 chr13 94447864 94448261 -7424908 - L1MEc LINE L1 -4553 1843 1429 360 0 0 0 chr13 94448274 94448314 -7424855 + (TG)n Simple_repeat Simple_repeat 1 40 0 888 280 108 14 chr13 94448334 94448745 -7424424 + L1MC4 LINE L1 7272 7754 -101 22 103 0 0 chr13 94448884 94448962 -7424207 + AT_rich Low_complexity Low_complexity 1 78 0 671 81 10 0 chr13 94449612 94449711 -7423458 + (TTCC)n Simple_repeat Simple_repeat 2 101 0 1781 184 0 16 chr13 94449713 94450029 -7423140 - AluSx SINE Alu -1 311 1 288 170 11 149 chr13 94451712 94451806 -7421363 + Tigger5 DNA MER2_type 2 82 -2241 * 1334 141 8 59 chr13 94451797 94451856 -7421313 + Tigger5 DNA MER2_type 2082 2142 -181 1473 131 5 0 chr13 94451856 94452062 -7421107 + AluSq SINE Alu 88 294 -19 1334 141 8 59 chr13 94452062 94452257 -7420912 + Tigger5 DNA MER2_type 2142 2323 0 215 269 0 30 chr13 94453035 94453102 -7420067 + (CATA)n Simple_repeat Simple_repeat 4 68 0 320 313 67 15 chr13 94453488 94453622 -7419547 + L2 LINE L2 3132 3272 0 839 196 13 0 chr13 94454391 94454544 -7418625 - Tigger2a DNA MER2_type 0 434 280 753 204 41 41 chr13 94454546 94454718 -7418451 - AluJo SINE Alu -48 264 93 1397 134 14 63 chr13 94454720 94455004 -7418165 - Tigger2a DNA MER2_type -164 270 1 2482 49 0 0 chr13 94455207 94455495 -7417674 - AluY SINE Alu -12 299 12 282 183 0 0 chr13 94455953 94456024 -7417145 + GA-rich Low_complexity Low_complexity 2 72 0 22 35 0 0 chr13 94457138 94457167 -7416002 + AT_rich Low_complexity Low_complexity 1 29 0 221 226 38 0 chr13 94457471 94457524 -7415645 + GA-rich Low_complexity Low_complexity 4 58 0 29 78 0 0 chr13 94457966 94458030 -7415139 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr13 94458094 94458115 -7415054 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr13 94458721 94458763 -7414406 + AT_rich Low_complexity Low_complexity 1 42 0 330 26 0 0 chr13 94459615 94459654 -7413515 + (TG)n Simple_repeat Simple_repeat 2 40 0 1957 148 3 3 chr13 94459746 94460057 -7413112 + AluSx SINE Alu 1 311 -1 1118 190 35 16 chr13 94460343 94460653 -7412516 - L1M4 LINE L1 -660 5750 5443 1402 256 33 26 chr13 94460656 94460759 -7412410 - L1M4 LINE L1 -3520 2862 2761 1707 193 0 10 chr13 94460759 94461064 -7412105 + AluJb SINE Alu 1 302 -10 1402 256 33 26 chr13 94461064 94461718 -7411451 - L1M4 LINE L1 -3621 2761 2103 341 375 109 34 chr13 94462594 94463005 -7410164 + L3 LINE CR1 1135 1576 -1 694 132 9 18 chr13 94463073 94463187 -7409982 + LTR49-int LTR ERV1 4192 4304 -2454 * 3706 241 54 6 chr13 94463180 94464051 -7409118 + LTR49-int LTR ERV1 1530 2442 -1749 * 3814 175 53 40 chr13 94464043 94465197 -7407972 + LTR49-int LTR ERV1 4835 6070 -688 1089 147 28 14 chr13 94465203 94465514 -7407655 + LTR47A LTR ERVL 2 366 -86 264 341 66 41 chr13 94467315 94467507 -7405662 - MIR3 SINE MIR -1 207 3 184 325 93 46 chr13 94467711 94467862 -7405307 + L2 LINE L2 2598 2755 -559 333 68 0 0 chr13 94467903 94467947 -7405222 + (TA)n Simple_repeat Simple_repeat 1 44 0 5688 30 6 0 chr13 94467950 94468616 -7404553 - L1PA4 LINE L1 -18 6137 5468 237 254 32 0 chr13 94468747 94468810 -7404359 + (CATA)n Simple_repeat Simple_repeat 3 67 0 317 238 60 0 chr13 94470043 94470127 -7403042 + L1MC4 LINE L1 6614 6702 -1340 350 332 24 71 chr13 94470288 94470499 -7402670 + HAL1 LINE L1 1609 1809 -698 37 23 0 0 chr13 94470948 94470992 -7402177 + AT_rich Low_complexity Low_complexity 1 44 0 232 215 54 0 chr13 94471043 94471136 -7402033 + HAL1b LINE L1 1023 1120 -228 2436 107 41 8 chr13 94471192 94471555 -7401614 - THE1C LTR MaLR 0 375 1 10143 113 49 5 chr13 94471555 94473067 -7400102 - THE1C-int LTR MaLR 0 1580 2 2373 123 21 16 chr13 94473068 94473441 -7399728 - THE1C LTR MaLR 0 375 1 2363 136 8 0 chr13 94473493 94473854 -7399315 - THE1B LTR MaLR 0 364 1 670 190 0 84 chr13 94474010 94474096 -7399073 + FLAM_A SINE Alu 1 72 -230 1679 209 7 0 chr13 94474096 94474402 -7398767 + AluSx SINE Alu 1 308 -4 670 190 0 84 chr13 94474402 94474457 -7398712 + FLAM_A SINE Alu 72 130 -172 2453 49 0 0 chr13 94474558 94474865 -7398304 - AluY SINE Alu 0 307 1 216 103 26 0 chr13 94477303 94477342 -7395827 + T-rich Low_complexity Low_complexity 3 42 0 23 0 0 0 chr13 94477385 94477408 -7395761 + AT_rich Low_complexity Low_complexity 1 23 0 598 277 11 37 chr13 94479519 94479728 -7393441 + MIR SINE MIR 33 231 -31 26 0 0 0 chr13 94480817 94480843 -7392326 + AT_rich Low_complexity Low_complexity 1 26 0 1161 223 12 71 chr13 94481637 94481828 -7391341 + L1ME2 LINE L1 5602 5756 -408 1799 171 0 16 chr13 94481828 94482137 -7391032 + AluJo SINE Alu 1 304 -8 1161 223 12 71 chr13 94482137 94482366 -7390803 + L1ME2 LINE L1 5756 5997 -167 1491 165 31 115 chr13 94482394 94482849 -7390320 - MLT2D LTR ERVL -8 406 1 368 259 53 20 chr13 94482853 94483023 -7390146 + L1MA10 LINE L1 5991 6154 -180 728 196 6 6 chr13 94483023 94483202 -7389967 + L1MA7 LINE L1 6112 6290 -1 206 294 25 101 chr13 94484631 94484750 -7388419 - MIR SINE MIR -57 205 96 350 259 18 45 chr13 94485702 94485814 -7387355 - MIR3 SINE MIR -2 206 98 2232 122 119 18 chr13 94486323 94486708 -7386461 - MSTA LTR MaLR -2 426 3 1403 283 16 110 chr13 94486935 94487433 -7385736 - MLT2A2 LTR ERVL -2 451 1 2140 99 0 0 chr13 94487460 94487779 -7385390 + AluSg SINE Alu 1 319 0 1781 160 46 30 chr13 94489327 94489696 -7383473 + THE1C LTR MaLR 1 375 0 591 263 62 17 chr13 94491222 94491401 -7381768 + MIR SINE MIR 35 221 -41 448 271 39 8 chr13 94491610 94491739 -7381430 + MIR SINE MIR 109 241 -21 199 275 29 0 chr13 94491757 94491826 -7381343 + L2 LINE L2 2303 2373 -941 184 200 0 0 chr13 94491840 94491875 -7381294 - L2 LINE L2 -2 3270 3236 812 300 83 24 chr13 94491973 94492458 -7380711 + L2 LINE L2 2775 3287 -26 218 322 61 101 chr13 94493025 94493699 -7379470 - L2 LINE L2 0 3272 2589 302 0 26 0 chr13 94494042 94494080 -7379089 + (AGTAG)n Simple_repeat Simple_repeat 5 43 0 380 235 54 25 chr13 94494188 94494321 -7378848 + MLT1B LTR MaLR 251 462 -43 1402 198 31 36 chr13 94494323 94494681 -7378488 - MLT1C LTR MaLR -102 365 10 24 53 0 0 chr13 94495857 94495895 -7377274 + AT_rich Low_complexity Low_complexity 1 38 0 1906 250 104 7 chr13 94496185 94496769 -7376400 - MLT1E1 LTR MaLR 0 654 14 293 206 21 82 chr13 94496815 94496912 -7376257 + MIR SINE MIR 128 218 -44 1144 202 14 14 chr13 94498907 94499130 -7374039 + AluJo SINE Alu 1 223 -89 429 295 33 0 chr13 94500459 94500581 -7372588 - L2 LINE L2 0 3313 3188 242 233 0 17 chr13 94500598 94500658 -7372511 + CT-rich Low_complexity Low_complexity 4 62 0 213 279 0 35 chr13 94500657 94500743 -7372426 + (TA)n Simple_repeat Simple_repeat 1 83 0 * 430 91 0 0 chr13 94500841 94500907 -7372262 + L1PB1 LINE L1 6085 6150 -1 226 319 0 0 chr13 94501173 94501242 -7371927 + MLT1J LTR MaLR 112 180 -331 6082 59 3 3 chr13 94501518 94502295 -7370874 + L1PA8 LINE L1 5390 6166 -6 2145 196 34 14 chr13 94502550 94503111 -7370058 - Charlie1a DNA MER1_type -44 1411 840 2545 245 34 18 chr13 94503156 94503890 -7369279 - Charlie1a DNA MER1_type -709 746 1 772 207 50 11 chr13 94503900 94504079 -7369090 - MER5A DNA MER1_type -2 187 2 400 216 80 6 chr13 94504385 94504501 -7368668 + MLT2B1 LTR ERVL 1 120 -294 489 179 117 14 chr13 94504516 94504608 -7368561 + MLT2B2 LTR ERVL 356 470 -45 1993 158 15 12 chr13 94504608 94504950 -7368219 + MER2 DNA MER2_type 1 343 -1 489 179 117 14 chr13 94504950 94505002 -7368167 + MLT2B2 LTR ERVL 470 515 0 22 0 0 0 chr13 94505666 94505688 -7367481 + AT_rich Low_complexity Low_complexity 1 22 0 761 235 83 10 chr13 94507863 94508067 -7365102 - MER20 DNA MER1_type 0 219 1 34 24 0 0 chr13 94510421 94510462 -7362707 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr13 94511874 94511897 -7361272 + AT_rich Low_complexity Low_complexity 1 23 0 188 359 82 24 chr13 94512459 94512629 -7360540 + L2 LINE L2 2911 3090 -182 1811 188 91 5 chr13 94512856 94513298 -7359871 - L1MB8 LINE L1 -219 5959 5480 875 142 33 11 chr13 94513326 94513509 -7359660 - L1MA8 LINE L1 -4 6287 6101 716 236 0 13 chr13 94513509 94513666 -7359503 + Tigger3(Golem) DNA MER2_type 3 157 -2872 * 6521 141 50 8 chr13 94513650 94514888 -7358281 + Tigger3(Golem) DNA MER2_type 1739 3028 -1 598 165 11 102 chr13 94514888 94515064 -7358105 - L1MA8 LINE L1 -190 6101 5942 8113 158 15 41 chr13 94515066 94515394 -7357775 - L1MA8 LINE L1 -509 5791 5456 1492 187 3 53 chr13 94515394 94515694 -7357475 - AluJb SINE Alu -27 285 1 8113 158 15 41 chr13 94515694 94517561 -7355608 - L1MA8 LINE L1 -844 5456 3646 239 232 12 0 chr13 94517804 94517886 -7355283 + CT-rich Low_complexity Low_complexity 4 86 0 213 125 0 25 chr13 94520039 94520079 -7353090 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 309 167 0 0 chr13 94521014 94521092 -7352077 + T-rich Low_complexity Low_complexity 1 78 0 330 198 163 0 chr13 94522915 94523001 -7350168 + MIR SINE MIR 137 236 -26 242 395 99 35 chr13 94523087 94523492 -7349677 + L2 LINE L2 2841 3271 -1 22 0 0 0 chr13 94523503 94523525 -7349644 + AT_rich Low_complexity Low_complexity 1 22 0 1244 269 160 27 chr13 94524065 94524916 -7348253 - HAL1 LINE L1 -5 2502 1539 1099 292 127 46 chr13 94524909 94525411 -7347758 - HAL1 LINE L1 -1263 1244 784 * 2261 97 0 3 chr13 94525411 94525720 -7347449 - AluSc SINE Alu -1 308 1 1099 292 127 46 chr13 94525720 94525940 -7347229 - HAL1 LINE L1 -1723 784 583 2725 26 0 0 chr13 94525940 94526248 -7346921 - AluY SINE Alu -3 308 1 1099 292 127 46 chr13 94526248 94526583 -7346586 - HAL1 LINE L1 -1924 583 101 5235 208 18 44 chr13 94526683 94527499 -7345670 - L1 LINE L1 -2532 4635 3799 5184 128 18 16 chr13 94527499 94527731 -7345438 - L1MA5A LINE L1 -1 6296 6066 696 180 0 8 chr13 94527731 94527853 -7345316 + FLAM_C SINE Alu 1 121 -12 5184 128 18 16 chr13 94527853 94528490 -7344679 - L1MA5A LINE L1 -231 6066 5425 5235 208 18 44 chr13 94528490 94528541 -7344628 - L1 LINE L1 -3368 3799 3748 12864 158 42 32 chr13 94528541 94530932 -7342237 - Tigger1 DNA MER2_type 0 2418 4 5235 208 18 44 chr13 94530932 94531482 -7341687 - L1 LINE L1 -3419 3748 3255 6179 248 55 14 chr13 94531489 94532659 -7340510 - L1 LINE L1 -3965 3202 2162 2250 108 0 16 chr13 94532659 94532973 -7340196 - AluY SINE Alu -2 309 1 6179 248 55 14 chr13 94532973 94534207 -7338962 - L1 LINE L1 -5005 2162 980 328 194 15 0 chr13 94534246 94534313 -7338856 - L1 LINE L1 -6964 204 137 1930 162 39 25 chr13 94534324 94534683 -7338486 + MER44D DNA MER2_type 72 490 -115 784 161 8 0 chr13 94534725 94534855 -7338314 + MER44D DNA MER2_type 575 705 0 271 383 37 31 chr13 94535146 94535308 -7337861 - MIR SINE MIR -79 183 21 188 350 145 43 chr13 94535400 94535751 -7337418 + L2 LINE L2 1869 2255 -1059 809 261 58 0 chr13 94536027 94536234 -7336935 + MER58A DNA MER1_type 3 221 -3 208 357 31 31 chr13 94536238 94536336 -7336833 + L2 LINE L2 2379 2476 -838 23 0 0 0 chr13 94536596 94536619 -7336550 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr13 94539381 94539402 -7333767 + AT_rich Low_complexity Low_complexity 1 21 0 181 302 0 0 chr13 94539674 94539737 -7333432 + MIR SINE MIR 183 245 -17 260 295 244 10 chr13 94539905 94540098 -7333071 + MIR SINE MIR 19 256 -6 557 113 0 0 chr13 94541436 94541516 -7331653 - MADE1 DNA Mariner 0 80 1 244 283 7 103 chr13 94541909 94542054 -7331115 + MIR SINE MIR 8 138 -124 713 288 59 0 chr13 94542163 94542385 -7330784 - MIR SINE MIR -5 257 23 400 272 35 9 chr13 94542356 94542470 -7330699 - L2 LINE L2 -8 3305 3189 * 211 233 0 0 chr13 94543681 94543724 -7329445 + L2 LINE L2 3261 3303 -10 292 268 140 32 chr13 94543793 94543950 -7329219 - L3 LINE CR1 -89 1488 1315 28 29 0 0 chr13 94544839 94544874 -7328295 + AT_rich Low_complexity Low_complexity 1 35 0 538 196 35 46 chr13 94546363 94546536 -7326633 - HsTC2 DNA Tc2 -104 1794 1624 812 276 13 22 chr13 94547252 94547484 -7325685 - MIR SINE MIR -9 253 24 22 35 0 0 chr13 94547538 94547567 -7325602 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr13 94547672 94547694 -7325475 + AT_rich Low_complexity Low_complexity 1 22 0 745 319 128 41 chr13 94547707 94548436 -7324733 - L2 LINE L2 -594 2720 2055 1647 160 52 49 chr13 94548436 94548804 -7324365 - THE1C LTR MaLR -4 371 3 745 319 128 41 chr13 94548804 94549086 -7324083 - L2 LINE L2 -1259 2055 1799 2427 158 34 2 chr13 94549086 94549498 -7323671 + MSTA LTR MaLR 1 425 -3 745 319 128 41 chr13 94549498 94549768 -7323401 - L2 LINE L2 -1515 1799 1327 627 325 48 16 chr13 94550101 94550353 -7322816 - MIR SINE MIR 0 262 3 311 323 42 42 chr13 94550686 94550878 -7322291 + L2 LINE L2 2415 2606 -708 835 182 0 47 chr13 94550971 94551141 -7322028 + MLT1A1 LTR MaLR 1 162 -203 2030 166 40 8 chr13 94551151 94551524 -7321645 - MLT1B LTR MaLR -5 385 1 515 320 65 13 chr13 94551692 94551923 -7321246 + MIR SINE MIR 17 259 -3 21 0 0 0 chr13 94552475 94552496 -7320673 + AT_rich Low_complexity Low_complexity 1 21 0 1534 196 14 4 chr13 94552699 94552975 -7320194 - AluJo SINE Alu -30 282 4 1903 147 16 7 chr13 94553320 94553626 -7319543 - AluSg SINE Alu -1 309 1 242 250 225 29 chr13 94553685 94553925 -7319244 - HAL1 LINE L1 -380 2127 1841 742 301 71 28 chr13 94554108 94554433 -7318736 - HERVL LTR ERVL -1515 4139 3801 371 307 18 24 chr13 94554747 94554913 -7318256 - HERVL LTR ERVL -2112 3373 3209 1174 341 39 19 chr13 94554951 94555522 -7317647 - HERVL LTR ERVL -2579 3185 2604 976 340 74 35 chr13 94555594 94556299 -7316870 - HERVL LTR ERVL -3266 2498 1767 587 309 33 57 chr13 94556710 94557076 -7316093 - HERVL LTR ERVL -4337 1317 961 1478 194 88 86 chr13 94558053 94558645 -7314524 - MLT1E LTR MaLR 0 593 1 1376 252 31 0 chr13 94560010 94560331 -7312838 - MER58B DNA MER1_type -6 335 5 337 353 10 0 chr13 94560683 94560785 -7312384 + L2 LINE L2 3155 3257 -15 267 321 82 30 chr13 94560776 94560910 -7312259 - MIR SINE MIR -49 213 73 * 410 340 46 39 chr13 94561127 94561409 -7311760 - HAL1 LINE L1 -1066 1441 1158 198 0 0 0 chr13 94561582 94561604 -7311565 + (TA)n Simple_repeat Simple_repeat 2 23 0 25 0 0 0 chr13 94562248 94562273 -7310896 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr13 94562551 94562572 -7310597 + AT_rich Low_complexity Low_complexity 1 21 0 183 162 0 0 chr13 94563293 94563330 -7309839 + A-rich Low_complexity Low_complexity 2 38 0 1410 211 73 48 chr13 94564440 94564894 -7308275 + MLT1C LTR MaLR 3 467 0 200 271 12 47 chr13 94565108 94565193 -7307976 - L2 LINE L2 -15 3298 3217 24 67 0 0 chr13 94565284 94565329 -7307840 + AT_rich Low_complexity Low_complexity 1 45 0 861 321 116 28 chr13 94566544 94566755 -7306414 - L2 LINE L2 -774 2540 2349 3588 87 9 4 chr13 94566755 94567206 -7305963 + MLT2A2 LTR ERVL 1 453 0 861 321 116 28 chr13 94567206 94567668 -7305501 - L2 LINE L2 -965 2349 1791 2389 65 7 3 chr13 94567668 94567977 -7305192 - AluY SINE Alu -1 310 1 861 321 116 28 chr13 94567977 94568015 -7305154 - L2 LINE L2 -1523 1791 1758 243 273 93 27 chr13 94568301 94568451 -7304718 - HAL1 LINE L1 -944 1563 1404 278 105 0 0 chr13 94568661 94568699 -7304470 + MLT1I LTR MaLR 98 135 -274 378 256 34 8 chr13 94568832 94568949 -7304220 + GA-rich Low_complexity Low_complexity 1 120 0 21 0 0 0 chr13 94619432 94619453 -7253716 + AT_rich Low_complexity Low_complexity 1 21 0 1537 202 10 26 chr13 94619857 94620159 -7253010 - AluJo SINE Alu -15 297 1 230 160 20 0 chr13 94621042 94621092 -7252077 + CT-rich Low_complexity Low_complexity 1 51 0 2113 98 34 10 chr13 94621429 94621725 -7251444 + AluSx SINE Alu 1 303 -9 23 33 0 0 chr13 94622089 94622119 -7251050 + AT_rich Low_complexity Low_complexity 1 30 0 248 307 0 27 chr13 94624167 94624242 -7248927 - MIR SINE MIR -187 75 3 252 86 0 0 chr13 94625436 94625471 -7247698 + (A)n Simple_repeat Simple_repeat 1 35 0 377 355 71 46 chr13 94625983 94626394 -7246775 + L3 LINE CR1 1135 1555 -22 312 102 0 0 chr13 94629739 94629788 -7243381 + (TC)n Simple_repeat Simple_repeat 2 50 0 203 0 0 36 chr13 94630818 94630846 -7242323 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 208 276 17 0 chr13 94633071 94633129 -7240040 + GA-rich Low_complexity Low_complexity 3 61 0 2020 117 74 14 chr13 94633146 94633496 -7239673 + L1PB3 LINE L1 5783 6153 -1 2127 144 0 6 chr13 94633501 94633813 -7239356 + AluSx SINE Alu 1 310 -2 237 33 0 0 chr13 94635043 94635073 -7238096 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 243 220 17 0 chr13 94635437 94635496 -7237673 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 67 33 0 chr13 94636216 94636246 -7236923 + (TTAA)n Simple_repeat Simple_repeat 1 31 0 188 41 20 82 chr13 94636624 94636673 -7236496 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 2207 87 0 17 chr13 94637195 94637518 -7235651 - AluSx SINE Alu 0 318 1 180 77 0 0 chr13 94637529 94637555 -7235614 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1387 185 9 0 chr13 94637555 94637782 -7235387 - AluJb SINE Alu -83 229 1 207 186 0 0 chr13 94638021 94638064 -7235105 + (CA)n Simple_repeat Simple_repeat 1 43 0 465 277 14 21 chr13 94638933 94639074 -7234095 - MIR SINE MIR -21 241 102 2284 89 0 3 chr13 94640831 94641123 -7232046 - AluSx SINE Alu -18 294 4 479 152 0 0 chr13 94642380 94642459 -7230710 + MER116 DNA Mariner 1 79 -1 183 42 0 0 chr13 94642705 94642729 -7230440 + (TTA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr13 94642784 94642814 -7230355 + AT_rich Low_complexity Low_complexity 1 30 0 1897 174 6 3 chr13 94642983 94643294 -7229875 + AluJb SINE Alu 1 312 0 510 311 30 64 chr13 94644999 94645258 -7227911 - MIR SINE MIR -9 253 4 1570 211 27 6 chr13 94647596 94647933 -7225236 + MER2 DNA MER2_type 1 344 0 743 32 11 0 chr13 94648854 94648948 -7224221 + (TCTA)n Simple_repeat Simple_repeat 1 95 0 2040 153 15 3 chr13 94648948 94649288 -7223881 - MER2 DNA MER2_type 0 344 1 1510 164 4 0 chr13 94649624 94649887 -7223282 + MER2 DNA MER2_type 2 265 -80 322 302 168 10 chr13 94650676 94650878 -7222291 - L2 LINE L2 -93 3179 2946 279 363 68 48 chr13 94650988 94651341 -7221828 - L2 LINE L2 -488 2826 2467 1577 207 69 31 chr13 94651356 94651806 -7221363 - MLT1C LTR MaLR 0 467 1 793 208 7 5 chr13 94652293 94652600 -7220569 + MLT1A1 LTR MaLR 1 365 0 273 239 130 11 chr13 94652600 94652692 -7220477 + MIR SINE MIR 95 197 -65 352 134 0 0 chr13 94653101 94653171 -7219998 - MSTB2 LTR MaLR 0 457 327 1435 143 87 0 chr13 94653171 94653402 -7219767 + AluSx SINE Alu 35 285 -27 563 283 36 36 chr13 94653649 94653872 -7219297 + MIR SINE MIR 17 239 -23 226 329 93 36 chr13 94653919 94654059 -7219110 + MIR SINE MIR 73 220 -42 24 67 0 0 chr13 94654773 94654818 -7218351 + AT_rich Low_complexity Low_complexity 1 45 0 309 324 120 45 chr13 94655376 94655818 -7217351 + L2 LINE L2 2839 3313 0 830 201 79 0 chr13 94660763 94660952 -7212217 - MER3 DNA MER1_type 0 209 6 251 175 18 0 chr13 94661143 94661200 -7211969 + (TA)n Simple_repeat Simple_repeat 2 59 0 273 308 110 20 chr13 94662145 94662291 -7210878 + MER5B DNA MER1_type 4 162 -16 227 289 0 0 chr13 94662304 94662356 -7210813 + MER5B DNA MER1_type 125 176 -2 22 0 0 0 chr13 94662609 94662631 -7210538 + AT_rich Low_complexity Low_complexity 1 22 0 2107 135 140 8 chr13 94662911 94663289 -7209880 + MSTA LTR MaLR 1 428 0 476 199 35 6 chr13 94664565 94664736 -7208433 + GA-rich Low_complexity Low_complexity 1 176 0 334 272 22 54 chr13 94664778 94664912 -7208257 - MLT1F1 LTR MaLR -400 167 40 534 306 186 23 chr13 94665848 94666198 -7206971 + L2 LINE L2 2818 3224 -89 23 0 0 0 chr13 94666264 94666287 -7206882 + AT_rich Low_complexity Low_complexity 1 23 0 303 304 140 12 chr13 94666377 94666548 -7206621 - MIR SINE MIR -68 194 2 304 289 139 36 chr13 94667823 94668017 -7205152 - MIR SINE MIR -1 261 48 3478 208 31 36 chr13 94668251 94669102 -7204067 - MER63C DNA MER1_type -13 917 72 1775 133 88 23 chr13 94669124 94669476 -7203693 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr13 94670471 94670500 -7202669 + AT_rich Low_complexity Low_complexity 1 29 0 260 236 47 75 chr13 94670911 94671017 -7202152 + L3 LINE CR1 1108 1210 -367 253 275 191 8 chr13 94671019 94671150 -7202019 + L3 LINE CR1 1164 1318 -259 291 124 2 0 chr13 94671165 94671212 -7201957 + MSTA LTR MaLR 379 428 0 288 291 117 0 chr13 94672105 94672208 -7200961 + L2 LINE L2 3199 3313 0 396 289 240 27 chr13 94672991 94673320 -7199849 + MLT1J2 LTR MaLR 34 432 -18 222 37 0 0 chr13 94674250 94674277 -7198892 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2033 163 0 0 chr13 94674338 94674638 -7198531 + AluSx SINE Alu 1 300 -12 261 0 0 0 chr13 94674975 94675004 -7198165 + (TC)n Simple_repeat Simple_repeat 1 29 0 300 213 83 56 chr13 94675261 94675369 -7197800 - MER81 DNA DNA -3 111 1 390 21 0 0 chr13 94675451 94675498 -7197671 + (CA)n Simple_repeat Simple_repeat 2 48 0 2216 119 36 30 chr13 94675642 94676004 -7197165 + THE1B LTR MaLR 1 364 0 264 346 0 0 chr13 94677058 94677162 -7196007 - L1MC/D LINE L1 -2017 5791 5688 1917 139 48 0 chr13 94677617 94677911 -7195258 - AluSq SINE Alu -5 308 1 288 257 142 26 chr13 94679582 94679695 -7193474 + L1MD2 LINE L1 5973 6098 -261 2770 164 61 29 chr13 94679762 94680188 -7192981 - MER44D DNA MER2_type -1891 596 93 2288 98 0 10 chr13 94680188 94680493 -7192676 - AluSc SINE Alu -7 302 1 2770 164 61 29 chr13 94680493 94680590 -7192579 - MER44D DNA MER2_type -2394 93 1 1047 201 28 31 chr13 94680594 94680848 -7192321 + L1MD2 LINE L1 6099 6351 -8 234 313 66 63 chr13 94680861 94681123 -7192046 - L2 LINE L2 -202 3070 2763 897 171 5 43 chr13 94681217 94681404 -7191765 + FRAM SINE Alu 1 175 -1 1707 37 4 98 chr13 94682029 94682275 -7190894 - AluY SINE Alu -88 223 1 2601 29 0 0 chr13 94682871 94683179 -7189990 - L1PA4 LINE L1 -2 6153 5846 253 262 93 55 chr13 94683207 94683310 -7189859 + MIR SINE MIR 62 176 -86 1029 259 147 39 chr13 94683310 94683873 -7189296 + MLT1E3 LTR MaLR 1 624 0 253 262 93 55 chr13 94683873 94683952 -7189217 + MIR SINE MIR 176 251 -11 483 60 0 0 chr13 94683980 94684047 -7189122 + (TA)n Simple_repeat Simple_repeat 2 68 0 2950 6 0 0 chr13 94684401 94684719 -7188450 - AluYb8 SINE Alu 0 318 1 1076 210 88 80 chr13 94685174 94685675 -7187494 + MER39 LTR ERV1 1 688 -19 1317 191 52 19 chr13 94686504 94686771 -7186398 + AluJo SINE Alu 11 286 -26 30 0 0 0 chr13 94686772 94686802 -7186367 + AT_rich Low_complexity Low_complexity 1 30 0 29 78 0 0 chr13 94687403 94687467 -7185702 + AT_rich Low_complexity Low_complexity 1 64 0 513 243 21 35 chr13 94687695 94687839 -7185330 - MLT1F1 LTR MaLR 0 542 401 598 217 69 29 chr13 94687850 94688025 -7185144 - MER53 DNA DNA -6 183 2 885 223 101 80 chr13 94688028 94688429 -7184740 - MLT1F1 LTR MaLR -137 430 25 28 61 0 0 chr13 94688974 94689023 -7184146 + AT_rich Low_complexity Low_complexity 1 49 0 207 100 0 0 chr13 94690721 94690751 -7182418 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 25 0 0 0 chr13 94691013 94691038 -7182131 + AT_rich Low_complexity Low_complexity 1 25 0 264 122 0 0 chr13 94691224 94691265 -7181904 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 2240 122 0 0 chr13 94691455 94691759 -7181410 - AluSq SINE Alu -7 306 3 878 102 34 0 chr13 94692169 94692287 -7180882 - FLAM_C SINE Alu -11 132 11 411 315 62 28 chr13 94693305 94693483 -7179686 - L2 LINE L2 -4 3309 3126 2022 135 29 35 chr13 94693852 94694229 -7178940 - THE1C LTR MaLR 0 375 1 1456 257 138 13 chr13 94694664 94695120 -7178049 + MLT1F LTR MaLR 3 515 -27 929 202 47 60 chr13 94695507 94695823 -7177346 + L1M4 LINE L1 2 320 -6326 387 0 0 0 chr13 94695823 94695866 -7177303 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 2045 83 4 4 chr13 94695869 94696133 -7177036 - AluY SINE Alu -16 295 32 929 202 47 60 chr13 94696133 94696756 -7176413 + L1M4 LINE L1 322 1301 -5345 1079 190 53 104 chr13 94696756 94697150 -7176019 + MLT1A2 LTR MaLR 1 374 0 566 156 46 0 chr13 94697152 94697261 -7175908 + L1M4 LINE L1 1299 1412 -5234 266 193 21 62 chr13 94697782 94697927 -7175242 + (TA)n Simple_repeat Simple_repeat 1 139 0 1215 220 26 0 chr13 94698049 94698353 -7174816 + L1M4 LINE L1 1422 1733 -4913 * 2134 211 25 72 chr13 94698333 94698557 -7174612 + L1MB5 LINE L1 5511 5744 -430 1081 194 202 16 chr13 94698557 94698810 -7174359 + AluJb SINE Alu 1 300 -2 2134 211 25 72 chr13 94698810 94699268 -7173901 + L1MB5 LINE L1 5744 6161 -13 2325 108 0 6 chr13 94699899 94700213 -7172956 - AluSx SINE Alu 0 312 1 2494 57 0 0 chr13 94700425 94700725 -7172444 - AluSx SINE Alu -12 300 1 2080 98 0 23 chr13 94700732 94701038 -7172131 - AluSq SINE Alu -14 299 1 324 256 17 83 chr13 94701072 94701252 -7171917 + Charlie7 DNA MER1_type 471 638 -1974 576 265 207 15 chr13 94701304 94701632 -7171537 + L2 LINE L2 2923 3313 0 183 42 0 0 chr13 94702380 94702404 -7170765 + (A)n Simple_repeat Simple_repeat 1 24 0 1951 128 80 26 chr13 94702543 94702895 -7170274 + THE1C LTR MaLR 2 372 -3 1413 180 73 26 chr13 94703505 94703849 -7169320 + MER46B DNA MER2_type 2 236 0 2109 133 101 19 chr13 94704193 94704569 -7168600 - Tigger3b DNA MER2_type 0 1231 825 3651 139 45 36 chr13 94704571 94705186 -7167983 - Tigger3b DNA MER2_type -2325 703 80 2313 84 37 0 chr13 94705186 94705485 -7167684 - AluY SINE Alu -1 310 1 3651 139 45 36 chr13 94705485 94705566 -7167603 - Tigger3b DNA MER2_type -2948 80 1 259 309 63 40 chr13 94706448 94706623 -7166546 - MIR SINE MIR -36 226 48 700 273 29 13 chr13 94706731 94706966 -7166203 - MIR SINE MIR -7 255 11 204 266 37 64 chr13 94706990 94707099 -7166070 + MIR SINE MIR 113 218 -44 2923 131 20 0 chr13 94707192 94707650 -7165519 - L1PA16 LINE L1 0 6166 5700 225 188 0 21 chr13 94707843 94707891 -7165278 + GA-rich Low_complexity Low_complexity 1 47 0 180 97 0 0 chr13 94709218 94709249 -7163920 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 229 356 130 9 chr13 94709393 94709508 -7163661 + L2 LINE L2 3137 3265 -7 21 0 0 0 chr13 94709940 94709961 -7163208 + AT_rich Low_complexity Low_complexity 1 21 0 213 167 0 42 chr13 94710299 94710313 -7162856 + (CA)n Simple_repeat Simple_repeat 2 15 -32 2023 77 0 11 chr13 94710313 94710586 -7162583 + AluY SINE Alu 41 310 -1 213 167 0 42 chr13 94710586 94710619 -7162550 + (CA)n Simple_repeat Simple_repeat 15 47 0 2185 120 10 0 chr13 94710626 94710935 -7162234 - AluSx SINE Alu 0 312 1 1915 216 48 10 chr13 94710956 94711460 -7161709 - L1MD3 LINE L1 -11 7984 7462 1305 109 5 30 chr13 94711464 94711702 -7161467 + AluSg/x SINE Alu 111 312 0 1085 259 126 16 chr13 94711706 94711887 -7161282 - L1MD3 LINE L1 -742 7253 7093 342 80 0 0 chr13 94711887 94711937 -7161232 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 1085 259 126 16 chr13 94711937 94712206 -7160963 - L1MD3 LINE L1 -902 7093 6753 208 191 95 16 chr13 94713733 94713796 -7159373 + MIR SINE MIR 81 148 -114 2701 117 24 21 chr13 94714135 94714561 -7158608 + MSTC LTR MaLR 2 428 0 26 0 0 0 chr13 94714861 94714887 -7158282 + AT_rich Low_complexity Low_complexity 1 26 0 593 270 75 11 chr13 94714971 94715054 -7158115 - MER58C DNA MER1_type -2230 190 114 258 56 0 0 chr13 94715054 94715090 -7158079 + (CA)n Simple_repeat Simple_repeat 1 36 0 593 270 75 11 chr13 94715090 94715180 -7157989 - MER58C DNA MER1_type -2306 114 6 983 166 45 72 chr13 94715217 94715482 -7157687 - L1M3 LINE L1 -665 5515 5258 800 233 148 9 chr13 94717853 94718170 -7154999 + L1ME2 LINE L1 5794 6154 -10 1519 186 25 4 chr13 94718887 94719162 -7154007 + AluJb SINE Alu 1 314 0 218 0 61 0 chr13 94719162 94719195 -7153974 + (CAAAA)n Simple_repeat Simple_repeat 1 140 0 308 227 102 0 chr13 94719407 94719495 -7153674 + MER5B DNA MER1_type 1 97 -81 1055 80 0 27 chr13 94719674 94719824 -7153345 - AluSg/x SINE Alu -1 311 166 189 0 0 0 chr13 94719841 94719862 -7153307 + (A)n Simple_repeat Simple_repeat 1 21 0 2432 49 0 3 chr13 94720405 94720692 -7152477 - AluY SINE Alu -10 301 16 2207 114 0 0 chr13 94722333 94722631 -7150538 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr13 94722877 94722900 -7150269 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1762 136 64 0 chr13 94722902 94723166 -7150003 - AluSx SINE Alu -31 281 1 46 33 0 0 chr13 94723734 94723794 -7149375 + AT_rich Low_complexity Low_complexity 1 60 0 7607 25 1 1 chr13 94723841 94724789 -7148380 + L1PA4 LINE L1 5206 6154 -1 418 228 288 32 chr13 94725064 94725502 -7147667 + HAL1 LINE L1 797 1346 -1161 4041 91 8 110 chr13 94725512 94726250 -7146919 + MER4A LTR ERV1 2 664 0 210 439 16 5 chr13 94726342 94726531 -7146638 + L2 LINE L2 2522 2712 -602 331 250 102 55 chr13 94726927 94727055 -7146114 + L2 LINE L2 3179 3312 -1 31 26 0 0 chr13 94727434 94727472 -7145697 + AT_rich Low_complexity Low_complexity 1 38 0 7305 40 5 0 chr13 94728105 94728991 -7144178 - L1PA5 LINE L1 -2 6152 5263 591 333 49 10 chr13 94730741 94731029 -7142140 + L1MC/D LINE L1 5468 5766 -2042 639 318 10 10 chr13 94731818 94732013 -7141156 - MIR SINE MIR -64 198 4 25 31 0 0 chr13 94733062 94733094 -7140075 + AT_rich Low_complexity Low_complexity 1 32 0 417 308 129 69 chr13 94733771 94734261 -7138908 - L3 LINE CR1 -155 1422 904 197 299 109 58 chr13 94735666 94735803 -7137366 + L2 LINE L2 2623 2766 -548 1533 150 17 0 chr13 94736066 94736299 -7136870 + AluJo SINE Alu 31 267 -45 264 209 12 23 chr13 94737397 94737483 -7135686 + (TATAA)n Simple_repeat Simple_repeat 2 86 0 189 281 166 36 chr13 94737539 94737678 -7135491 - MIR SINE MIR -46 216 60 1688 178 3 11 chr13 94737761 94738048 -7135121 + AluSq SINE Alu 1 285 -28 301 189 0 0 chr13 94738075 94738128 -7135041 - L1MC4 LINE L1 -1339 6703 6651 278 218 0 13 chr13 94738147 94738225 -7134944 - L1MC4 LINE L1 -1341 6701 6625 382 265 164 42 chr13 94738600 94738789 -7134380 - MIR SINE MIR -3 259 48 1629 172 34 24 chr13 94740127 94740423 -7132746 - AluJb SINE Alu -13 299 1 378 0 0 0 chr13 94740479 94740521 -7132648 + (CA)n Simple_repeat Simple_repeat 2 43 0 2870 34 3 11 chr13 94741709 94742063 -7131106 - L1PA4 LINE L1 -3 6152 5802 442 351 11 43 chr13 94743618 94743702 -7129467 - MIR3 SINE MIR -21 187 102 521 114 13 0 chr13 94743702 94743781 -7129388 - MADE1 DNA Mariner 0 80 1 442 351 11 43 chr13 94743781 94743881 -7129288 - MIR3 SINE MIR -106 102 9 22 56 0 0 chr13 94744058 94744094 -7129075 + AT_rich Low_complexity Low_complexity 1 36 0 2500 225 27 48 chr13 94744880 94745042 -7128127 + MER82 DNA MER2_type 1 165 -488 2319 107 0 0 chr13 94745042 94745351 -7127818 - AluSx SINE Alu -3 309 1 2500 225 27 48 chr13 94745351 94745855 -7127314 + MER82 DNA MER2_type 165 653 0 1897 159 0 3 chr13 94748275 94748599 -7124570 + AluSx SINE Alu 1 323 0 306 0 0 0 chr13 94749249 94749283 -7123886 + (A)n Simple_repeat Simple_repeat 1 34 0 336 329 103 7 chr13 94749961 94750107 -7123062 + MIR SINE MIR 29 188 -74 285 256 37 0 chr13 94750233 94750315 -7122854 + HsTC2 DNA Tc2 2 86 -1812 377 214 68 58 chr13 94750364 94750467 -7122702 - MIR SINE MIR 0 262 159 186 302 172 0 chr13 94750573 94750689 -7122480 + MIR SINE MIR 68 203 -59 * 730 284 31 13 chr13 94750672 94750897 -7122272 + MIR SINE MIR 12 240 -22 2446 68 0 7 chr13 94751056 94751363 -7121806 + AluY SINE Alu 1 305 -6 510 291 57 11 chr13 94751573 94751748 -7121421 - MER5A DNA MER1_type 0 189 7 23 0 0 0 chr13 94752137 94752160 -7121009 + AT_rich Low_complexity Low_complexity 1 23 0 1850 118 0 0 chr13 94752400 94752646 -7120523 - AluSq SINE Alu -67 246 1 553 79 11 11 chr13 94752650 94752739 -7120430 + (TTTC)n Simple_repeat Simple_repeat 2 90 0 622 247 111 0 chr13 94753609 94753771 -7119398 + MIR SINE MIR 9 188 -74 229 167 39 45 chr13 94753797 94753953 -7119216 + (TA)n Simple_repeat Simple_repeat 1 155 0 276 77 0 0 chr13 94754077 94754116 -7119053 + (CA)n Simple_repeat Simple_repeat 1 39 0 657 250 33 37 chr13 94754775 94755047 -7118122 + L1MB2 LINE L1 2030 2300 -4084 9560 220 60 19 chr13 94755047 94755510 -7117659 + L1MB2 LINE L1 2685 3128 -3279 2244 110 48 28 chr13 94755510 94755865 -7117304 + THE1B LTR MaLR 1 362 -2 9560 220 60 19 chr13 94755865 94757290 -7115879 + L1MB2 LINE L1 3128 4494 -1913 240 35 0 0 chr13 94757290 94757319 -7115850 + (CA)n Simple_repeat Simple_repeat 2 30 0 9560 220 60 19 chr13 94757319 94758975 -7114194 + L1MB2 LINE L1 4494 6393 -14 23 54 0 0 chr13 94759200 94759237 -7113932 + AT_rich Low_complexity Low_complexity 1 37 0 1924 73 0 11 chr13 94760632 94760893 -7112276 - L1PA8 LINE L1 -4 6168 5911 2223 100 3 3 chr13 94761666 94761965 -7111204 + AluSc SINE Alu 1 299 -10 2146 157 3 3 chr13 94762071 94762408 -7110761 - MER1B DNA MER1_type 0 337 1 649 184 63 68 chr13 94762945 94763135 -7110034 - MER5A DNA MER1_type 0 189 1 793 148 8 0 chr13 94763342 94763470 -7109699 + L1MB1 LINE L1 6040 6168 0 1571 243 32 10 chr13 94763989 94764397 -7108772 - MER49 LTR ERV1 0 923 507 967 188 26 16 chr13 94764401 94764593 -7108576 - MER72 LTR ERV1 -528 194 1 1214 217 42 16 chr13 94764597 94764896 -7108273 - MLT1A1 LTR MaLR 0 365 59 1162 235 159 55 chr13 94764896 94765544 -7107625 + LTR48 LTR ERV1 4 642 -2 271 206 41 14 chr13 94765544 94765613 -7107556 - MLT1A1 LTR MaLR -303 71 1 516 222 0 0 chr13 94765859 94765967 -7107202 + MLT1E2 LTR MaLR 519 626 0 292 322 0 0 chr13 94766108 94766195 -7106974 - MIR SINE MIR -6 256 170 589 168 137 46 chr13 94766642 94766839 -7106330 - THE1C LTR MaLR -160 215 1 1638 151 178 24 chr13 94767672 94768043 -7105126 + MSTA LTR MaLR 1 428 0 2242 130 16 24 chr13 94769300 94769678 -7103491 - THE1C LTR MaLR 0 375 1 180 0 0 0 chr13 94769724 94769744 -7103425 + (CAA)n Simple_repeat Simple_repeat 2 21 0 232 322 0 0 chr13 94770238 94770328 -7102841 - L1MC4 LINE L1 -1338 6704 6615 225 0 0 0 chr13 94770374 94770399 -7102770 + (TG)n Simple_repeat Simple_repeat 2 26 0 493 340 47 21 chr13 94770403 94770638 -7102531 + MIR SINE MIR 3 243 -19 275 158 0 18 chr13 94771787 94771844 -7101325 + CT-rich Low_complexity Low_complexity 3 58 0 21 71 0 0 chr13 94822742 94822784 -7050385 + AT_rich Low_complexity Low_complexity 1 42 0 1943 109 38 0 chr13 94823290 94823582 -7049587 + AluSg SINE Alu 5 306 0 1241 249 8 0 chr13 94823864 94824129 -7049040 + Tigger7 DNA MER2_type 1 267 -2220 429 229 10 0 chr13 94824127 94824223 -7048946 + Tigger7 DNA MER2_type 2393 2489 -2 * 1555 244 101 65 chr13 94824834 94825400 -7047769 + MLT1E LTR MaLR 8 593 0 285 286 87 8 chr13 94825566 94825692 -7047477 + MIR SINE MIR 90 225 -37 270 0 0 0 chr13 94826041 94826071 -7047098 + (T)n Simple_repeat Simple_repeat 1 30 0 743 98 27 0 chr13 94829070 94829182 -7043987 + L1MA3 LINE L1 3535 3649 -3916 6570 133 17 61 chr13 94829214 94831274 -7041895 + L1MA3 LINE L1 5756 7714 -10 368 280 179 31 chr13 94832070 94832327 -7040842 - L2 LINE L2 0 3313 3019 340 375 7 13 chr13 94832486 94832638 -7040531 - MIR SINE MIR -51 211 61 228 225 0 0 chr13 94833400 94833440 -7039729 + (CA)n Simple_repeat Simple_repeat 2 41 0 723 161 12 68 chr13 94834152 94834313 -7038856 - AluJb SINE Alu -11 301 150 182 312 110 37 chr13 94834608 94834717 -7038452 - L2 LINE L2 -252 3061 2945 307 344 131 0 chr13 94835058 94835180 -7037989 - MIR SINE MIR 0 262 125 22 35 0 0 chr13 94835180 94835209 -7037960 + AT_rich Low_complexity Low_complexity 1 29 0 26 23 0 23 chr13 94836620 94836644 -7036525 + AT_rich Low_complexity Low_complexity 1 25 -18 2045 110 0 23 chr13 94836644 94836944 -7036225 - AluSx SINE Alu -19 293 1 26 23 0 23 chr13 94836944 94836963 -7036206 + AT_rich Low_complexity Low_complexity 25 43 0 25 0 0 0 chr13 94836983 94837008 -7036161 + AT_rich Low_complexity Low_complexity 1 25 0 211 286 32 0 chr13 94837152 94837215 -7035954 + CT-rich Low_complexity Low_complexity 2 66 0 47 33 0 0 chr13 94837337 94837398 -7035771 + AT_rich Low_complexity Low_complexity 1 61 0 200 100 25 0 chr13 94837649 94837689 -7035480 + (TG)n Simple_repeat Simple_repeat 2 42 0 297 143 61 0 chr13 94838805 94838854 -7034315 + Tigger2 DNA MER2_type 4 55 -2663 2364 77 0 29 chr13 94838854 94839165 -7034004 - AluY SINE Alu -9 302 1 2505 151 28 2 chr13 94839187 94839611 -7033558 + Tigger2 DNA MER2_type 2280 2714 -4 1996 139 0 3 chr13 94840629 94840924 -7032245 + AluSx SINE Alu 1 294 -18 439 243 21 60 chr13 94841071 94841274 -7031895 + MLT1E LTR MaLR 5 198 -369 454 221 11 0 chr13 94841287 94841382 -7031787 + MLT1F1 LTR MaLR 464 559 -8 1335 178 8 0 chr13 94841395 94841636 -7031533 - L1PA16 LINE L1 -1 6165 5923 22 35 0 0 chr13 94841872 94841901 -7031268 + AT_rich Low_complexity Low_complexity 1 29 0 217 343 105 47 chr13 94842311 94842483 -7030686 + L3 LINE CR1 1394 1575 -2 564 234 0 15 chr13 94843555 94843692 -7029477 - L1PB4 LINE L1 0 6156 6022 270 0 0 0 chr13 94845324 94845354 -7027815 + (CAT)n Simple_repeat Simple_repeat 3 32 0 2043 200 43 55 chr13 94845454 94845963 -7027206 + MLT1D LTR MaLR 3 505 0 461 250 16 0 chr13 94846840 94846968 -7026201 - L1MC4 LINE L1 -806 7236 7107 1479 210 0 4 chr13 94846977 94847287 -7025882 - AluJb SINE Alu 0 311 3 270 280 40 57 chr13 94848919 94849094 -7024075 + L2 LINE L2 2884 3055 -258 579 314 9 19 chr13 94851006 94851216 -7021953 - MIR SINE MIR -22 240 33 215 253 36 36 chr13 94851303 94851386 -7021783 + MIR3 SINE MIR 111 193 -15 2129 108 7 3 chr13 94851891 94852187 -7020982 + AluSq SINE Alu 1 297 -16 340 367 103 16 chr13 94852312 94852680 -7020489 + L3 LINE CR1 460 859 -718 21 0 0 0 chr13 94853118 94853139 -7020030 + AT_rich Low_complexity Low_complexity 1 21 0 6996 32 0 11 chr13 94853140 94853984 -7019185 - L1PA4 LINE L1 0 6155 5321 186 209 0 0 chr13 94854229 94854272 -7018897 + (CA)n Simple_repeat Simple_repeat 2 44 0 768 228 16 5 chr13 94854604 94854788 -7018381 + MER105 DNA DNA 1 186 -18 2219 147 78 0 chr13 94854824 94855219 -7017950 - MSTB LTR MaLR 0 426 1 448 311 37 19 chr13 94855256 94855417 -7017752 + MER5B DNA MER1_type 1 164 -14 452 36 0 0 chr13 94856380 94856436 -7016733 + L1PA3 LINE L1 6097 6152 -3 203 329 27 27 chr13 94857479 94857552 -7015617 + MIR3 SINE MIR 3 75 -133 1719 227 64 53 chr13 94859746 94860328 -7012841 + L1ME2 LINE L1 3759 4346 -1800 708 266 81 26 chr13 94860331 94861273 -7011896 + L1ME2 LINE L1 5162 6152 -12 1980 111 0 75 chr13 94861940 94862273 -7010896 + AluY SINE Alu 1 308 -3 22 0 0 0 chr13 94862511 94862533 -7010636 + AT_rich Low_complexity Low_complexity 1 22 0 188 343 27 0 chr13 94863489 94863562 -7009607 - MIR3 SINE MIR -6 202 128 259 293 80 0 chr13 94863850 94863925 -7009244 - L2 LINE L2 -1 3312 3232 203 156 0 0 chr13 94865593 94865625 -7007544 + GA-rich Low_complexity Low_complexity 1 32 0 257 241 172 11 chr13 94865700 94865787 -7007382 + L2 LINE L2 3212 3312 -1 504 59 0 0 chr13 94866571 94866639 -7006530 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 1985 136 0 3 chr13 94866649 94866935 -7006234 - AluSx SINE Alu -27 285 1 27 0 0 0 chr13 94867229 94867256 -7005913 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr13 94868164 94868193 -7004976 + AT_rich Low_complexity Low_complexity 1 29 0 3409 220 76 28 chr13 94868342 94869250 -7003919 - L1MD2 LINE L1 -16 6343 5392 2254 101 0 0 chr13 94869366 94869654 -7003515 - AluSc SINE Alu -21 288 1 270 0 0 0 chr13 94869823 94869853 -7003316 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 94870051 94870072 -7003097 + AT_rich Low_complexity Low_complexity 1 21 0 367 336 18 9 chr13 94870342 94870452 -7002717 + L2 LINE L2 3162 3272 0 347 171 38 9 chr13 94870564 94870669 -7002500 + CT-rich Low_complexity Low_complexity 5 112 0 465 231 63 28 chr13 94870927 94871070 -7002099 - MIR SINE MIR -6 256 109 221 288 0 0 chr13 94872042 94872101 -7001068 - L2 LINE L2 -2 3311 3253 2309 108 0 0 chr13 94872380 94872685 -7000484 + AluSx SINE Alu 2 306 -6 549 276 91 26 chr13 94873137 94873384 -6999785 - MIR SINE MIR 0 262 1 2174 149 5 16 chr13 94875671 94876046 -6997123 - THE1C LTR MaLR -2 373 3 9771 136 11 30 chr13 94876048 94877658 -6995511 - THE1C-int LTR MaLR 0 1580 1 2217 130 13 26 chr13 94877660 94878038 -6995131 - THE1C LTR MaLR -2 373 1 260 321 101 48 chr13 94878111 94878279 -6994890 + MER102b DNA MER1_type 145 321 -20 1753 158 73 17 chr13 94878366 94878721 -6994448 + THE1C LTR MaLR 1 375 0 3288 176 41 20 chr13 94878795 94879481 -6993688 - L1MC1 LINE L1 -19 6314 5615 22 35 0 0 chr13 94879763 94879792 -6993377 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr13 94880369 94880392 -6992777 + AT_rich Low_complexity Low_complexity 1 23 0 243 354 13 0 chr13 94880687 94880766 -6992403 - MIR3 SINE MIR -21 187 108 482 201 122 0 chr13 94882265 94882404 -6990765 - L1MC2 LINE L1 -10 6334 6179 * 944 228 22 44 chr13 94882402 94882722 -6990447 + L1M4 LINE L1 5068 5380 -766 1914 155 0 3 chr13 94883149 94883459 -6989710 - AluJb SINE Alu -3 309 1 23 68 0 0 chr13 94884584 94884628 -6988541 + AT_rich Low_complexity Low_complexity 1 44 0 378 219 0 109 chr13 94885948 94886076 -6987093 + MER77 LTR ERV1 7 120 -485 1612 223 9 6 chr13 94886087 94886419 -6986750 + MER77 LTR ERV1 273 605 0 219 375 60 35 chr13 94886540 94886772 -6986397 - MIR SINE MIR -19 243 6 241 289 79 13 chr13 94887260 94887336 -6985833 - L2 LINE L2 -43 3229 3149 332 305 142 16 chr13 94887520 94887710 -6985459 + MIR SINE MIR 49 262 0 2289 99 3 7 chr13 94887934 94888236 -6984933 - AluSp SINE Alu -11 302 2 333 219 0 0 chr13 94888247 94888320 -6984849 - L1MA10 LINE L1 -2 6332 6260 189 0 0 0 chr13 94888731 94888752 -6984417 + (TA)n Simple_repeat Simple_repeat 2 22 0 1375 247 22 30 chr13 94889093 94889350 -6983819 - MLT1A1 LTR MaLR 0 365 110 2294 134 31 11 chr13 94889350 94889707 -6983462 - THE1B LTR MaLR 0 364 1 1375 247 22 30 chr13 94889707 94889817 -6983352 - MLT1A1 LTR MaLR -255 110 1 24 85 0 0 chr13 94891003 94891062 -6982107 + AT_rich Low_complexity Low_complexity 1 59 0 2411 49 3 29 chr13 94891177 94891485 -6981684 + AluY SINE Alu 1 300 -11 22 0 0 0 chr13 94892319 94892341 -6980828 + AT_rich Low_complexity Low_complexity 1 22 0 1052 236 10 2 chr13 94892855 94893146 -6980023 + MER2 DNA MER2_type 1 345 0 2623 58 0 0 chr13 94893152 94893461 -6979708 - AluY SINE Alu -2 309 1 399 307 16 11 chr13 94893952 94894141 -6979028 + L1ME LINE L1 5630 5819 -302 2171 96 4 0 chr13 94895468 94895772 -6977397 + AluSg SINE Alu 1 305 0 1974 164 37 50 chr13 94895790 94896342 -6976827 + MLT2A2 LTR ERVL 1 553 -1 24 53 0 0 chr13 94897435 94897473 -6975696 + AT_rich Low_complexity Low_complexity 1 38 0 636 218 68 111 chr13 94898137 94898550 -6974619 + MER110A LTR ERV1 74 468 0 1078 222 62 85 chr13 94898573 94899125 -6974044 + MER67C LTR ERV1 5 506 -8 293 289 106 44 chr13 94899459 94899639 -6973530 - MIR SINE MIR -69 193 3 23 0 0 0 chr13 94900350 94900373 -6972796 + AT_rich Low_complexity Low_complexity 1 23 0 317 273 91 30 chr13 94901116 94901248 -6971921 - MIR SINE MIR -105 157 18 1490 91 45 9 chr13 94901431 94901652 -6971517 + MER30 DNA MER1_type 1 229 -1 2316 143 12 40 chr13 94902923 94903349 -6969820 + MLT2D LTR ERVL 1 414 0 193 288 62 125 chr13 94903821 94904141 -6969028 + L2 LINE L2 2973 3272 0 35 54 0 0 chr13 94904745 94904801 -6968368 + AT_rich Low_complexity Low_complexity 1 56 0 4532 170 19 9 chr13 94908538 94909415 -6963754 - L1PA13 LINE L1 -2305 3841 2953 7936 164 37 2 chr13 94909415 94911662 -6961507 + L1PA13 LINE L1 3835 6144 -19 4532 170 19 9 chr13 94911662 94911673 -6961496 - L1P LINE L1 -3193 2953 2944 180 0 0 0 chr13 94912868 94912888 -6960281 + (TTA)n Simple_repeat Simple_repeat 3 22 0 2133 101 6 25 chr13 94912981 94913297 -6959872 - AluSx SINE Alu -2 310 1 180 111 0 0 chr13 94913476 94913503 -6959666 + L2 LINE L2 3027 3053 -260 1289 208 24 45 chr13 94914551 94914839 -6958330 + AluJo SINE Alu 1 282 -30 183 162 0 0 chr13 94914855 94914892 -6958277 + (CA)n Simple_repeat Simple_repeat 2 38 0 2153 120 47 33 chr13 94917579 94917938 -6955231 - THE1B LTR MaLR 0 364 1 828 198 12 0 chr13 94920296 94920458 -6952711 - FRAM SINE Alu -12 164 1 22 35 0 0 chr13 94920815 94920844 -6952325 + AT_rich Low_complexity Low_complexity 1 29 0 703 229 27 132 chr13 94921167 94921317 -6951852 - MLT1A1 LTR MaLR -3 362 198 6372 28 3 0 chr13 94921317 94922064 -6951105 + L1PA3 LINE L1 5404 6152 -3 703 229 27 132 chr13 94922064 94922307 -6950862 - MLT1A1 LTR MaLR -167 198 1 3253 210 68 26 chr13 94924281 94924684 -6948485 + L1MA9 LINE L1 5372 5757 -555 287 25 25 0 chr13 94924684 94924724 -6948445 + (TG)n Simple_repeat Simple_repeat 2 42 0 3253 210 68 26 chr13 94924724 94924911 -6948258 + L1MA9 LINE L1 5757 5935 -377 2072 128 10 0 chr13 94924911 94925207 -6947962 + AluSx SINE Alu 5 303 -9 3253 210 68 26 chr13 94925207 94925482 -6947687 + L1MA9 LINE L1 5935 6274 -38 355 289 189 53 chr13 94925815 94926735 -6946434 - L2 LINE L2 -8 3305 2224 1945 213 63 15 chr13 94927326 94927866 -6945303 - L1MB8 LINE L1 -6 6172 5607 24 67 0 0 chr13 94927879 94927924 -6945245 + AT_rich Low_complexity Low_complexity 1 45 0 243 0 0 0 chr13 94928530 94928557 -6944612 + (A)n Simple_repeat Simple_repeat 1 27 0 239 228 102 11 chr13 94929424 94929505 -6943664 + MIR SINE MIR 45 131 -77 22 0 0 0 chr13 94930272 94930294 -6942875 + AT_rich Low_complexity Low_complexity 1 22 0 1522 194 7 17 chr13 94930734 94931044 -6942125 - AluJb SINE Alu 0 307 1 1584 209 63 43 chr13 94931606 94932047 -6941122 + MER90 LTR ERV1 94 543 -71 504 248 48 21 chr13 94932491 94932636 -6940533 - MIR SINE MIR -45 217 69 2227 110 0 3 chr13 94933048 94933347 -6939822 + AluSc SINE Alu 1 298 -11 1963 163 72 42 chr13 94933392 94933864 -6939305 - MER66B LTR ERV1 0 486 1 3170 159 24 0 chr13 94934695 94935247 -6937922 + MER34B LTR ERV1 1 565 0 398 19 0 19 chr13 94935357 94935409 -6937760 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 293 220 0 0 chr13 94935643 94935702 -6937467 - MIR SINE MIR -144 118 60 344 333 16 8 chr13 94935942 94936071 -6937098 + MIR SINE MIR 61 190 -72 433 349 64 18 chr13 94936308 94936526 -6936643 - MIR SINE MIR -16 246 19 2110 100 0 17 chr13 94938284 94938573 -6934596 + AluY SINE Alu 1 284 -27 203 0 37 0 chr13 94938577 94938604 -6934565 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 1889 136 14 7 chr13 94938609 94938904 -6934265 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr13 94939186 94939216 -6933953 + AT_rich Low_complexity Low_complexity 1 30 0 451 280 29 63 chr13 94939443 94939650 -6933519 - L2 LINE L2 -1 3312 3113 22 0 0 0 chr13 94940096 94940118 -6933051 + AT_rich Low_complexity Low_complexity 1 22 0 297 285 87 72 chr13 94942758 94942860 -6930309 + Charlie2 DNA MER1_type 116 215 -2647 393 70 0 0 chr13 94942860 94942917 -6930252 + (CA)n Simple_repeat Simple_repeat 2 58 0 297 285 87 72 chr13 94942917 94943021 -6930148 + Charlie2 DNA MER1_type 215 325 -2537 1928 111 13 52 chr13 94943546 94943853 -6929316 - AluSx SINE Alu -17 295 1 1417 18 0 0 chr13 94944310 94944474 -6928695 - L1PA4 LINE L1 -3 6152 5989 315 320 138 12 chr13 94944811 94945152 -6928017 - L1ME4a LINE L1 -226 5895 5512 2630 224 37 82 chr13 94946045 94947074 -6926095 - L1ME1 LINE L1 -2 6164 5175 1966 132 50 31 chr13 94948512 94948869 -6924300 + THE1B LTR MaLR 1 364 0 242 250 33 17 chr13 94950225 94950285 -6922884 + MIR SINE MIR 64 124 -84 533 315 151 19 chr13 94950970 94951386 -6921783 + L2 LINE L2 2842 3312 -1 306 313 90 21 chr13 94951924 94952068 -6921101 - L1ME LINE L1 -406 5715 5562 1979 155 74 57 chr13 94952086 94952505 -6920664 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr13 94952804 94952826 -6920343 + AT_rich Low_complexity Low_complexity 1 22 0 1070 221 100 24 chr13 94954211 94954550 -6918619 + MLT1A1 LTR MaLR 1 365 0 678 220 40 23 chr13 94955013 94955186 -6917983 + MER5A DNA MER1_type 12 187 -2 742 151 16 0 chr13 94955396 94955522 -6917647 - L1PA11 LINE L1 0 6174 6047 220 385 32 26 chr13 94955570 94955726 -6917443 - MER5A DNA MER1_type -32 157 1 3454 38 9 0 chr13 94955922 94956341 -6916828 - L1PA5 LINE L1 -1796 4350 3928 8576 45 0 9 chr13 94956342 94958185 -6914984 + L1PA5 LINE L1 4321 6154 0 1960 146 4 0 chr13 94958675 94958955 -6914214 + AluSx SINE Alu 5 285 -27 387 345 103 5 chr13 94959618 94959812 -6913357 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 94959883 94959910 -6913259 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1653 219 44 24 chr13 94960059 94960452 -6912717 - MSTD LTR MaLR -2 394 3 221 0 0 33 chr13 94960985 94961015 -6912154 + (CA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr13 94961254 94961282 -6911887 + AT_rich Low_complexity Low_complexity 1 28 0 260 268 0 0 chr13 94962409 94962465 -6910704 + GA-rich Low_complexity Low_complexity 2 57 0 244 277 0 0 chr13 94962929 94962994 -6910175 + Charlie8 DNA MER1_type 2351 2415 -2 2133 162 19 32 chr13 94963002 94963465 -6909704 + L1MB7 LINE L1 5728 6184 0 251 263 118 0 chr13 94964456 94964532 -6908637 - Tigger5 DNA MER2_type 0 2323 2239 312 237 0 62 chr13 94964613 94964710 -6908459 - L1MC4 LINE L1 -1339 6703 6613 310 299 0 0 chr13 94964657 94964744 -6908425 + L1MC4 LINE L1 6614 6700 -1342 * 282 325 67 61 chr13 94965757 94965956 -6907213 - L2 LINE L2 -4 3309 3113 1134 254 58 58 chr13 94965956 94966420 -6906749 + MLT1C LTR MaLR 2 465 -2 282 325 67 61 chr13 94966420 94966710 -6906459 - L2 LINE L2 -200 3113 2817 216 111 0 0 chr13 94967566 94967602 -6905567 + (TC)n Simple_repeat Simple_repeat 1 36 0 529 276 79 25 chr13 94967858 94968061 -6905108 + MIR SINE MIR 46 259 -3 607 266 87 39 chr13 94968386 94968593 -6904576 - MIR SINE MIR 0 262 46 4180 124 23 5 chr13 94968914 94969558 -6903611 - L1PA14 LINE L1 -1 6160 5505 32 26 0 0 chr13 94969771 94969810 -6903359 + AT_rich Low_complexity Low_complexity 1 39 0 1574 212 42 49 chr13 94970447 94970975 -6902194 - L1MC4 LINE L1 -24 8018 7495 22 80 0 0 chr13 94972438 94972488 -6900681 + AT_rich Low_complexity Low_complexity 1 50 0 293 324 120 0 chr13 94973131 94973239 -6899930 + L2 LINE L2 3193 3313 0 21 0 0 0 chr13 94973809 94973830 -6899339 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 94973915 94973943 -6899226 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr13 94976199 94976226 -6896943 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2055 94 0 72 chr13 94976226 94976533 -6896636 - AluSq SINE Alu -28 285 1 23 92 0 0 chr13 94976908 94976973 -6896196 + AT_rich Low_complexity Low_complexity 1 65 0 353 198 12 0 chr13 94977211 94977292 -6895877 + (TA)n Simple_repeat Simple_repeat 2 83 0 180 0 0 0 chr13 94977292 94977312 -6895857 + (GA)n Simple_repeat Simple_repeat 2 21 0 1796 144 18 0 chr13 94977420 94977705 -6895464 - AluSq SINE Alu 0 313 24 207 204 0 0 chr13 94977798 94977852 -6895317 + GA-rich Low_complexity Low_complexity 2 55 0 205 325 84 0 chr13 94978135 94978218 -6894951 - L2 LINE L2 -3 3310 3221 186 349 81 0 chr13 94979090 94979176 -6893993 - MIR SINE MIR -74 134 42 1869 231 50 8 chr13 94979579 94980077 -6893092 + MLT2B1 LTR ERVL 2 520 0 225 175 0 0 chr13 94981598 94981638 -6891531 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 272 77 13 chr13 94982043 94982579 -6890590 - L1MC4 LINE L1 -211 7831 7262 429 286 156 0 chr13 94984295 94984449 -6888720 + MER5A DNA MER1_type 12 189 0 180 0 0 0 chr13 94986008 94986028 -6887141 + (A)n Simple_repeat Simple_repeat 1 20 0 853 222 0 0 chr13 94986182 94986353 -6886816 + AluJb SINE Alu 137 307 -5 260 327 45 18 chr13 94986504 94986614 -6886555 + MIR SINE MIR 33 145 -63 22 0 0 0 chr13 94988294 94988316 -6884853 + AT_rich Low_complexity Low_complexity 1 22 0 4155 240 73 29 chr13 94988419 94988906 -6884263 - L1MD2 LINE L1 -13 6346 5882 1644 176 0 31 chr13 94988906 94989225 -6883944 - AluJb SINE Alu -3 309 1 4155 240 73 29 chr13 94989225 94990132 -6883037 - L1MD2 LINE L1 -477 5882 5016 2453 56 0 10 chr13 94990132 94990435 -6882734 + AluY SINE Alu 1 300 -11 4155 240 73 29 chr13 94990435 94991488 -6881681 - L1MD2 LINE L1 -1343 5016 3793 191 59 0 29 chr13 94991490 94991524 -6881645 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 709 12 0 0 chr13 94991531 94991615 -6881554 - L1PA3 LINE L1 -3 6152 6069 21 71 0 0 chr13 94991749 94991791 -6881378 + AT_rich Low_complexity Low_complexity 1 42 0 2162 248 92 49 chr13 94992053 94992804 -6880365 + MER21B LTR ERV1 12 794 -69 1648 234 17 24 chr13 94993135 94993597 -6879572 + LTR40b LTR ERVL 4 462 0 692 296 32 22 chr13 94993795 94994072 -6879097 + L2 LINE L2 2695 2974 -340 2574 118 0 0 chr13 94994562 94994926 -6878243 + THE1B LTR MaLR 1 364 0 309 289 0 29 chr13 94995080 94995184 -6877985 + MLT1J LTR MaLR 401 501 -10 344 302 47 91 chr13 94995229 94995461 -6877708 + L2 LINE L2 3084 3305 -8 329 348 58 0 chr13 94996205 94996343 -6876826 - MIR3 SINE MIR -13 195 50 210 208 0 0 chr13 94997013 94997066 -6876103 + (TG)n Simple_repeat Simple_repeat 2 54 0 273 301 22 44 chr13 94998057 94998193 -6874976 - MLT1J LTR MaLR -54 457 325 22 0 0 0 chr13 94999745 94999767 -6873402 + AT_rich Low_complexity Low_complexity 1 22 0 334 313 192 0 chr13 94999917 95000099 -6873070 + L2 LINE L2 2437 2653 -661 2063 132 3 0 chr13 95000135 95000423 -6872746 - AluSx SINE Alu -23 289 1 1316 26 0 0 chr13 95000708 95000862 -6872307 - L1PA2 LINE L1 -3 6152 5999 4063 17 0 0 chr13 95000864 95001325 -6871844 + L1PA2 LINE L1 5527 5987 -168 399 362 64 9 chr13 95001387 95001713 -6871456 + L2 LINE L2 2921 3264 -49 491 299 5 27 chr13 95003900 95004087 -6869082 - HAL1 LINE L1 -960 1547 1365 30 0 0 0 chr13 95004231 95004261 -6868908 + AT_rich Low_complexity Low_complexity 1 30 0 224 211 0 0 chr13 95005888 95005932 -6867237 + (CAT)n Simple_repeat Simple_repeat 1 44 0 198 337 58 0 chr13 95005999 95006085 -6867084 - MIR SINE MIR -142 120 30 202 264 92 35 chr13 95007252 95007339 -6865830 + MIR SINE MIR 119 210 -52 281 307 123 9 chr13 95008875 95008989 -6864180 + L2 LINE L2 3145 3271 -1 21 0 0 0 chr13 95010607 95010628 -6862541 + AT_rich Low_complexity Low_complexity 1 21 0 4436 81 2 7 chr13 95016508 95017111 -6856058 + L1PA7 LINE L1 5555 6154 0 212 250 0 0 chr13 95017541 95017585 -6855584 + (CA)n Simple_repeat Simple_repeat 1 44 0 187 133 44 0 chr13 95018415 95018460 -6854709 + (CA)n Simple_repeat Simple_repeat 2 48 0 861 322 65 39 chr13 95018489 95018952 -6854217 + L2 LINE L2 2004 2478 -836 446 338 53 10 chr13 95018948 95019155 -6854014 + L2 LINE L2 2935 3150 -163 * 201 206 113 103 chr13 95019181 95019278 -6853891 + L2 LINE L2 3216 3313 0 368 303 67 47 chr13 95019331 95019451 -6853718 - L1ME LINE L1 -411 5751 5635 2199 46 0 8 chr13 95019451 95019714 -6853455 + AluY SINE Alu 39 299 -12 368 303 67 47 chr13 95019714 95019996 -6853173 - L1ME LINE L1 -527 5635 5347 21 57 0 0 chr13 95020024 95020059 -6853110 + AT_rich Low_complexity Low_complexity 1 35 0 221 288 27 14 chr13 95021047 95021120 -6852049 + L2 LINE L2 3237 3310 -3 215 393 41 0 chr13 95022359 95022504 -6850665 + MIR3 SINE MIR 47 197 -11 207 225 75 12 chr13 95022675 95022755 -6850414 + MIR SINE MIR 65 149 -113 354 319 115 22 chr13 95025183 95025409 -6847760 - MIR SINE MIR -12 250 4 267 259 0 0 chr13 95026542 95026627 -6846542 + (TA)n Simple_repeat Simple_repeat 1 85 0 276 371 24 17 chr13 95027044 95027338 -6845831 + L1ME LINE L1 5389 5684 -486 1770 192 42 8 chr13 95028272 95028631 -6844538 + L1MB1 LINE L1 5535 5905 -266 751 188 0 7 chr13 95028632 95028776 -6844393 + FLAM_C SINE Alu 1 143 0 987 206 0 0 chr13 95028803 95028983 -6844186 + FRAM SINE Alu 1 172 -4 279 181 24 12 chr13 95028996 95029079 -6844090 + GA-rich Low_complexity Low_complexity 3 86 0 819 206 61 19 chr13 95029253 95029467 -6843702 + L1MB1 LINE L1 5895 6117 -51 1178 282 48 26 chr13 95029479 95029933 -6843236 + MLT2B1 LTR ERVL 1 464 -56 272 159 0 5 chr13 95029975 95030025 -6843144 + MLT2D LTR ERVL 363 406 -8 198 103 0 0 chr13 95030075 95030104 -6843065 + (GAAAA)n Simple_repeat Simple_repeat 1 29 0 202 279 0 0 chr13 95030793 95030836 -6842333 + L2 LINE L2 3258 3300 -13 181 271 21 0 chr13 95031046 95031094 -6842075 - MIR SINE MIR -67 141 93 618 278 35 31 chr13 95031460 95031687 -6841482 + MIR SINE MIR 30 257 -5 2196 122 3 3 chr13 95031841 95032152 -6841017 - AluSx SINE Alu 0 312 2 209 333 83 45 chr13 95032952 95033108 -6840061 + MIR SINE MIR 46 207 -55 420 333 130 39 chr13 95035062 95035765 -6837404 - L2 LINE L2 -64 3249 2468 629 247 82 6 chr13 95036056 95036238 -6836931 + MER3 DNA MER1_type 1 196 -13 371 283 214 0 chr13 95036700 95036845 -6836324 - MIR3 SINE MIR -7 201 26 279 54 0 0 chr13 95038011 95038048 -6835121 + (TG)n Simple_repeat Simple_repeat 2 38 0 1354 102 9 58 chr13 95039213 95039438 -6833731 + AluSp SINE Alu 89 302 -11 201 175 0 0 chr13 95039451 95039491 -6833678 + A-rich Low_complexity Low_complexity 1 40 0 245 51 26 0 chr13 95039711 95039750 -6833419 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 389 300 43 29 chr13 95041104 95041244 -6831925 - MIR3 SINE MIR -62 146 5 2988 129 6 40 chr13 95043267 95043788 -6829381 + L1MA4 LINE L1 5517 6019 -281 277 193 157 0 chr13 95043789 95043877 -6829292 + L1MB4 LINE L1 6084 6183 0 31 0 0 0 chr13 95044895 95044926 -6828243 + AT_rich Low_complexity Low_complexity 1 31 0 184 348 176 9 chr13 95046496 95046717 -6826452 + L2 LINE L2 2286 2543 -771 213 140 53 18 chr13 95046953 95047010 -6826159 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 827 87 103 0 chr13 95047046 95047172 -6825997 - MER85 DNA T2_type 0 139 1 206 217 43 0 chr13 95047542 95047588 -6825581 + L2 LINE L2 3264 3311 -2 25 0 0 0 chr13 95047718 95047743 -6825426 + AT_rich Low_complexity Low_complexity 1 25 0 1129 150 50 5 chr13 95047988 95048188 -6824981 - AluJo SINE Alu -17 295 87 198 220 0 0 chr13 95049176 95049235 -6823934 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 21 36 0 0 chr13 95050246 95050274 -6822895 + AT_rich Low_complexity Low_complexity 1 28 0 249 327 36 18 chr13 95050308 95050418 -6822751 + MIR3 SINE MIR 87 198 -10 337 221 0 53 chr13 95050683 95050778 -6822391 - L1MC4 LINE L1 -1339 6703 6614 313 235 10 41 chr13 95050699 95050797 -6822372 + L1MC4 LINE L1 6614 6708 -1334 * 315 214 17 8 chr13 95050830 95050947 -6822222 + (TA)n Simple_repeat Simple_repeat 2 119 0 727 150 36 14 chr13 95051262 95051402 -6821767 + L1PB4 LINE L1 6011 6153 -3 2224 121 65 8 chr13 95052153 95052508 -6820661 - THE1C LTR MaLR 0 375 1 407 331 7 26 chr13 95052558 95052709 -6820460 + MIR SINE MIR 67 214 -48 590 90 0 0 chr13 95053013 95053091 -6820078 - MADE1 DNA Mariner 0 80 3 257 0 30 0 chr13 95053853 95053886 -6819283 + (TTATA)n Simple_repeat Simple_repeat 1 34 0 1341 212 95 0 chr13 95053886 95054202 -6818967 + MER7A DNA MER2_type 3 346 0 23 0 0 0 chr13 95054228 95054251 -6818918 + AT_rich Low_complexity Low_complexity 1 23 0 195 152 0 0 chr13 95055136 95055182 -6817987 + (TA)n Simple_repeat Simple_repeat 1 46 0 225 0 0 0 chr13 95055369 95055394 -6817775 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 624 297 65 73 chr13 95055394 95055889 -6817280 - L2 LINE L2 -13 3300 2810 22 0 0 0 chr13 95057038 95057060 -6816109 + AT_rich Low_complexity Low_complexity 1 22 0 3024 165 84 6 chr13 95057886 95058517 -6814652 + L1MA4 LINE L1 5621 6300 0 518 273 17 40 chr13 95058818 95058994 -6814175 + MER5B DNA MER1_type 3 174 -4 362 265 250 0 chr13 95059007 95059143 -6814026 + MER5A DNA MER1_type 13 182 -7 194 339 46 0 chr13 95059325 95059390 -6813779 - L2 LINE L2 0 3272 3205 231 279 47 23 chr13 95060370 95060499 -6812670 + L1ME LINE L1 5787 5918 -203 332 320 75 19 chr13 95061148 95061343 -6811826 - MIR3 SINE MIR -58 204 2 267 103 0 0 chr13 95061434 95061473 -6811696 + (CATA)n Simple_repeat Simple_repeat 2 40 0 1040 246 138 10 chr13 95061687 95062146 -6811023 - L1ME3A LINE L1 -213 5957 5407 339 192 0 55 chr13 95062148 95062221 -6810948 + MLT1D LTR MaLR 3 71 -434 225 0 0 0 chr13 95062488 95062513 -6810656 + (A)n Simple_repeat Simple_repeat 1 25 0 369 284 152 12 chr13 95063750 95064007 -6809162 + L1MC4a LINE L1 5592 5884 -1924 533 175 161 0 chr13 95064863 95065000 -6808169 - L1MC2 LINE L1 -34 6310 6152 2072 112 10 7 chr13 95115337 95115633 -6757536 - AluSg SINE Alu -13 297 1 2262 81 7 0 chr13 95115695 95116002 -6757167 + L1PA8 LINE L1 5856 6164 -8 185 142 88 0 chr13 95116024 95116137 -6757032 + (TA)n Simple_repeat Simple_repeat 1 123 0 2893 134 47 0 chr13 95116362 95116826 -6756343 + MER1A DNA MER1_type 44 529 0 206 241 0 17 chr13 95117646 95117704 -6755465 + CT-rich Low_complexity Low_complexity 4 60 0 230 310 35 35 chr13 95118001 95118114 -6755055 + L2 LINE L2 3199 3311 -2 21 36 0 0 chr13 95119255 95119283 -6753886 + AT_rich Low_complexity Low_complexity 1 28 0 7441 39 0 0 chr13 95119284 95120525 -6752644 - L1PA4 LINE L1 -1 6154 4913 7504 138 25 16 chr13 95120802 95122418 -6750751 - MER61-int LTR ERV1 -355 5908 2482 549 200 0 0 chr13 95122557 95122677 -6750492 + L1MA4A LINE L1 6177 6296 -7 854 315 12 20 chr13 95122678 95123181 -6749988 + L1MEc LINE L1 1318 1969 -4594 277 244 22 22 chr13 95123240 95123330 -6749839 - L1MC1 LINE L1 -18 6315 6226 1965 152 33 9 chr13 95123333 95123668 -6749501 + MER61A LTR ERV1 1 343 0 253 264 55 22 chr13 95123670 95123761 -6749408 + MER61A-int LTR ERV1 3 96 -5121 535 200 22 15 chr13 95123761 95123896 -6749273 - AluSp/q SINE Alu -13 300 165 400 90 60 0 chr13 95124015 95124082 -6749087 + L1P LINE L1 3993 4063 -2083 1258 193 4 8 chr13 95124082 95124325 -6748844 - MSTA LTR MaLR 0 428 187 2156 121 30 40 chr13 95124346 95124744 -6748425 - L1PA11 LINE L1 -2 6172 5779 26 30 0 0 chr13 95124904 95124937 -6748232 + AT_rich Low_complexity Low_complexity 1 33 0 327 284 14 14 chr13 95125035 95125183 -6747986 - L1P4 LINE L1 -595 5573 5426 2085 101 0 11 chr13 95125935 95126266 -6746903 - AluSx SINE Alu 0 328 1 785 153 0 0 chr13 95127033 95127177 -6745992 + L1MA4A LINE L1 6160 6303 0 211 232 43 72 chr13 95127601 95127670 -6745499 + MIR SINE MIR 27 93 -115 186 118 0 0 chr13 95127714 95127748 -6745421 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1628 248 12 2 chr13 95129467 95129866 -6743303 - L1 LINE L1 -1891 4255 3853 1398 114 9 36 chr13 95129866 95130086 -6743083 - AluSg/x SINE Alu -12 300 87 639 244 0 0 chr13 95130087 95130251 -6742918 - L1 LINE L1 -2286 3860 3697 288 0 0 0 chr13 95130254 95130286 -6742883 + (TG)n Simple_repeat Simple_repeat 2 33 0 345 305 8 16 chr13 95130422 95130550 -6742619 + C-rich Low_complexity Low_complexity 4 130 0 272 223 0 0 chr13 95130599 95130693 -6742476 + C-rich Low_complexity Low_complexity 1 94 0 386 394 78 7 chr13 95131148 95131432 -6741737 + L2 LINE L2 2874 3177 -95 224 214 0 0 chr13 95132149 95132191 -6740978 + G-rich Low_complexity Low_complexity 5 46 0 3655 166 12 12 chr13 95132255 95133437 -6739732 + L1M1 LINE L1 4560 5742 -563 4018 84 289 0 chr13 95133437 95134078 -6739091 - LTR12 LTR ERV1 0 826 1 3655 166 12 12 chr13 95134078 95134122 -6739047 + L1M1 LINE L1 5742 5785 -520 2244 191 4 2 chr13 95134121 95134612 -6738557 + L1 LINE L1 4784 5275 -871 * 5399 67 9 1 chr13 95134752 95135453 -6737716 - L1PA8 LINE L1 -15 6157 5452 27 49 0 0 chr13 95135464 95135505 -6737664 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 95135551 95135573 -6737596 + AT_rich Low_complexity Low_complexity 1 22 0 2240 121 0 0 chr13 95135961 95136274 -6736895 + AluSq SINE Alu 1 313 0 300 193 0 80 chr13 95136808 95136896 -6736273 - L1ME4a LINE L1 -5 6116 6036 462 256 44 0 chr13 95137311 95137448 -6735721 + MER69A DNA AcHobo 35 177 0 243 0 0 0 chr13 95138299 95138326 -6734843 + (TG)n Simple_repeat Simple_repeat 2 28 0 762 234 78 65 chr13 95138566 95138874 -6734295 - LTR68 LTR ERV1 -428 312 1 203 242 91 0 chr13 95138878 95138944 -6734225 + MIR SINE MIR 174 245 -17 842 166 6 0 chr13 95140876 95141033 -6732136 + L1MC3 LINE L1 7608 7765 -20 2028 107 87 35 chr13 95141293 95141639 -6731530 - THE1B LTR MaLR 0 364 1 1674 279 82 12 chr13 95142761 95143528 -6729641 + L1MC/D LINE L1 125 945 -5451 1736 66 5 0 chr13 95143629 95143840 -6729329 - AluY SINE Alu -99 212 1 278 302 32 32 chr13 95143878 95144067 -6729102 + L1MC/D LINE L1 5325 5513 -2364 207 178 69 30 chr13 95144928 95145029 -6728140 + (TATATG)n Simple_repeat Simple_repeat 4 108 0 387 255 0 10 chr13 95145312 95145414 -6727755 - L1MEc LINE L1 -6261 135 35 974 323 72 36 chr13 95145578 95145873 -6727296 + HERVL LTR ERVL 1763 2046 -3608 2160 120 29 27 chr13 95145873 95146247 -6726922 - THE1C LTR MaLR 0 375 1 974 323 72 36 chr13 95146247 95146991 -6726178 + HERVL LTR ERVL 2046 2917 -2737 1912 194 5 22 chr13 95146991 95147362 -6725807 - MLT1A1 LTR MaLR 0 365 1 974 323 72 36 chr13 95147362 95147750 -6725419 + HERVL LTR ERVL 2917 3290 -2364 617 291 59 28 chr13 95148051 95148333 -6724836 + HERVL LTR ERVL 3683 3972 -1513 967 296 20 30 chr13 95148402 95148797 -6724372 + HERVL LTR ERVL 4111 4501 -1263 9914 174 88 105 chr13 95148850 95152251 -6720918 - L1 LINE L1 -1992 5573 2115 1621 191 11 0 chr13 95152251 95152549 -6720620 - AluJb SINE Alu 0 306 6 9914 174 88 105 chr13 95152549 95152722 -6720447 - L1 LINE L1 -5450 2115 1941 2216 129 34 0 chr13 95152722 95153072 -6720097 + THE1B LTR MaLR 1 362 -2 11267 100 11 18 chr13 95153074 95153124 -6720045 + THE1B-int LTR MaLR 1 50 -1530 2371 75 0 16 chr13 95153124 95153430 -6719739 + AluY SINE Alu 1 301 -10 11267 100 11 18 chr13 95153430 95154238 -6718931 + THE1B-int LTR MaLR 50 845 -735 1968 144 7 3 chr13 95154238 95154529 -6718640 + AluSg SINE Alu 1 292 -18 11267 100 11 18 chr13 95154529 95155260 -6717909 + THE1B-int LTR MaLR 845 1580 0 2197 142 31 17 chr13 95155260 95155619 -6717550 + THE1B LTR MaLR 1 364 0 9914 174 88 105 chr13 95155619 95157348 -6715821 - L1 LINE L1 -5623 1942 12 301 289 93 64 chr13 95159195 95159710 -6713459 - L1ME LINE L1 -344 5809 5280 2010 116 10 10 chr13 95159728 95160020 -6713149 - AluY SINE Alu -19 292 1 3871 199 13 39 chr13 95160116 95160766 -6712403 - L1MD1 LINE L1 0 6636 5971 2185 121 7 0 chr13 95160766 95161064 -6712105 - AluSx SINE Alu -12 300 1 3871 199 13 39 chr13 95161064 95161240 -6711929 - L1MD1 LINE L1 -665 5971 5792 2238 119 0 0 chr13 95161240 95161534 -6711635 - AluSx SINE Alu -16 296 3 3871 199 13 39 chr13 95161534 95161761 -6711408 - L1MD1 LINE L1 -844 5792 5608 1842 225 59 54 chr13 95161784 95162619 -6710550 - L1MD1 LINE L1 -4045 2495 1657 416 276 138 35 chr13 95162655 95163003 -6710166 - L1MD1 LINE L1 -5708 313 118 475 296 6 6 chr13 95163080 95163249 -6709920 - L1ME LINE L1 -1979 4150 3982 672 322 105 36 chr13 95163361 95163953 -6709216 - L1ME LINE L1 -2292 3837 3195 2084 115 7 10 chr13 95163953 95164241 -6708928 - AluSx SINE Alu -25 287 1 672 322 105 36 chr13 95164241 95164294 -6708875 - L1ME LINE L1 -2934 3195 3147 333 277 23 23 chr13 95164332 95164462 -6708707 - L1ME LINE L1 -2886 3243 3114 1635 145 0 12 chr13 95164463 95164712 -6708457 - AluSq SINE Alu -28 285 40 303 312 74 37 chr13 95164824 95165013 -6708156 - L1ME LINE L1 -4726 1584 1389 1247 233 78 34 chr13 95165045 95165435 -6707734 + MLT1D LTR MaLR 5 470 -105 413 197 62 2 chr13 95165563 95165669 -6707500 + MLT1D LTR MaLR 387 478 -27 304 286 89 86 chr13 95165715 95165984 -6707185 - L1ME LINE L1 -4909 1210 941 498 102 37 9 chr13 95166026 95166134 -6707035 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 1530 180 55 4 chr13 95166159 95166414 -6706755 - AluJo SINE Alu -44 268 1 425 344 57 81 chr13 95166418 95166912 -6706257 - L1ME LINE L1 -5215 904 423 477 243 9 63 chr13 95167481 95167703 -6705466 + L1MC5 LINE L1 7720 7929 -32 4703 172 85 39 chr13 95169035 95170160 -6703009 + MER11A LTR ERVK 1 1266 0 549 197 87 1 chr13 95171098 95171311 -6701858 + MER65A LTR ERV1 180 441 -4 757 233 80 45 chr13 95171445 95171758 -6701411 + MER33 DNA MER1_type 1 324 0 1224 173 18 0 chr13 95171950 95172170 -6700999 + L1PA15-16 LINE L1 2 225 -6624 * 1357 228 30 30 chr13 95172148 95172482 -6700687 + L1PA15-16 LINE L1 772 1105 -5744 505 303 0 0 chr13 95172480 95172632 -6700537 + L1PA15-16 LINE L1 2912 3063 -3786 * 3725 255 25 8 chr13 95172794 95174002 -6699167 + L1PA15-16 LINE L1 3407 4634 -2215 419 280 133 0 chr13 95174016 95174159 -6699010 - MER5A DNA MER1_type 0 189 28 261 321 52 22 chr13 95174245 95174379 -6698790 + MLT1H LTR MaLR 217 354 -195 26 30 0 0 chr13 95174598 95174631 -6698538 + AT_rich Low_complexity Low_complexity 1 33 0 604 294 128 0 chr13 95175119 95175323 -6697846 - MIR SINE MIR -27 235 6 206 328 39 31 chr13 95175670 95175798 -6697371 + MIR SINE MIR 16 144 -64 1446 147 154 11 chr13 95176079 95176345 -6696824 + AluSg SINE Alu 1 304 -6 793 153 77 0 chr13 95176699 95176869 -6696300 - L1MA3 LINE L1 0 6305 6123 2298 109 3 0 chr13 95176884 95177195 -6695974 - AluSp SINE Alu -1 312 1 368 350 119 16 chr13 95178645 95178948 -6694221 - L3 LINE CR1 -3 1574 1241 849 224 0 0 chr13 95178980 95179150 -6694019 + MER5A DNA MER1_type 6 175 -14 1072 207 0 0 chr13 95180442 95180650 -6692519 - MER3 DNA MER1_type 0 209 2 231 246 220 8 chr13 95180689 95180807 -6692362 + MIR SINE MIR 119 261 -1 211 276 8 63 chr13 95181644 95181771 -6691398 + L2 LINE L2 2933 3052 -220 2098 118 3 7 chr13 95181923 95182227 -6690942 + AluSg SINE Alu 1 303 -7 360 0 0 0 chr13 95182803 95182843 -6690326 + (CA)n Simple_repeat Simple_repeat 2 41 0 217 260 115 19 chr13 95184405 95184509 -6688660 + MIR SINE MIR 107 220 -42 204 40 0 0 chr13 95186230 95186255 -6686914 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1826 137 0 62 chr13 95186268 95186574 -6686595 - AluJb SINE Alu -25 287 1 1794 122 93 11 chr13 95187119 95187397 -6685772 + AluSx SINE Alu 1 301 -11 2039 121 17 7 chr13 95188301 95188598 -6684571 - AluSc SINE Alu -9 300 1 450 0 0 0 chr13 95188608 95188658 -6684511 + (TG)n Simple_repeat Simple_repeat 1 50 0 935 68 0 0 chr13 95188674 95188791 -6684378 - AluSg SINE Alu -180 130 14 7164 55 3 7 chr13 95189267 95190429 -6682740 + L1PA8 LINE L1 5033 6172 0 301 231 128 67 chr13 95190807 95191002 -6682167 + MER58C DNA MER1_type 9 215 0 2268 102 0 7 chr13 95191178 95191473 -6681696 - AluSx SINE Alu -19 293 1 3001 104 2 5 chr13 95193093 95193536 -6679633 - L1PA13 LINE L1 -5 6158 5717 248 193 21 62 chr13 95193879 95194024 -6679145 + (TA)n Simple_repeat Simple_repeat 1 139 0 1190 177 50 138 chr13 95195545 95195923 -6677246 - MER7A DNA MER2_type -3 343 1 207 0 0 0 chr13 95196106 95196129 -6677040 + (CA)n Simple_repeat Simple_repeat 2 24 0 412 345 67 0 chr13 95196268 95196462 -6676707 + MIR SINE MIR 5 211 -51 276 30 0 0 chr13 95198133 95198166 -6675003 + (CA)n Simple_repeat Simple_repeat 1 33 0 308 372 128 22 chr13 95199049 95199509 -6673660 - L1ME LINE L1 -276 5845 5337 2102 115 10 0 chr13 95200606 95200902 -6672267 - AluSg SINE Alu -11 299 1 2253 81 7 0 chr13 95200964 95201271 -6671898 + L1PA8 LINE L1 5856 6164 -8 185 142 88 0 chr13 95201293 95201406 -6671763 + (TA)n Simple_repeat Simple_repeat 1 123 0 3064 134 47 0 chr13 95201631 95202095 -6671074 + MER1A DNA MER1_type 44 529 0 193 239 22 0 chr13 95202938 95202984 -6670185 - L2 LINE L2 0 3272 3226 289 319 115 53 chr13 95204173 95204261 -6668908 + L2 LINE L2 2994 3075 -238 2523 124 8 0 chr13 95204261 95204633 -6668536 + THE1C LTR MaLR 1 375 0 289 319 115 53 chr13 95204633 95204799 -6668370 + L2 LINE L2 3075 3313 0 181 337 102 10 chr13 95205861 95205959 -6667210 - L2 LINE L2 -613 2701 2595 271 293 149 29 chr13 95206097 95206305 -6666864 + MIR SINE MIR 29 261 -1 185 301 80 85 chr13 95207208 95207384 -6665785 + MIR3 SINE MIR 16 190 -18 1076 112 135 11 chr13 95207629 95207807 -6665362 + THE1C LTR MaLR 1 200 -175 1088 123 37 0 chr13 95208127 95208289 -6664880 + THE1C LTR MaLR 208 375 0 1510 187 0 7 chr13 95208712 95209001 -6664168 + L1 LINE L1 4868 5154 -992 229 268 14 42 chr13 95210469 95210540 -6662629 + L2 LINE L2 3235 3303 -10 369 75 0 0 chr13 95211069 95211122 -6662047 + (TG)n Simple_repeat Simple_repeat 2 54 0 692 187 30 45 chr13 95211322 95211520 -6661649 - Charlie5 DNA MER1_type 0 2624 2430 354 290 42 22 chr13 95211654 95211733 -6661436 - Charlie5 DNA MER1_type -41 121 45 266 65 0 22 chr13 95211733 95211779 -6661390 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 1919 99 0 4 chr13 95211779 95212026 -6661143 - AluSg SINE Alu -32 278 33 354 290 42 22 chr13 95212026 95212153 -6661016 - Charlie5 DNA MER1_type -116 46 1 21 57 0 0 chr13 95213789 95213824 -6659345 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr13 95213869 95213894 -6659275 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr13 95213941 95213984 -6659185 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr13 95214027 95214048 -6659121 + AT_rich Low_complexity Low_complexity 1 21 0 314 222 83 0 chr13 95214287 95214395 -6658774 - L1MA9 LINE L1 -22 6290 6174 756 164 60 75 chr13 95214397 95214598 -6658571 + L1MA9 LINE L1 5746 5943 -369 402 256 23 38 chr13 95215687 95215820 -6657349 + L3 LINE CR1 751 881 -696 306 0 0 0 chr13 95216375 95216409 -6656760 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 309 112 33 chr13 95216409 95216561 -6656608 + L3 LINE CR1 1174 1337 -240 190 404 115 24 chr13 95217299 95217638 -6655531 + L2 LINE L2 2848 3217 -55 282 263 30 40 chr13 95218282 95218381 -6654788 - MER5A DNA MER1_type -86 103 6 180 0 0 0 chr13 95218446 95218466 -6654703 + (TA)n Simple_repeat Simple_repeat 1 20 0 186 43 0 0 chr13 95219422 95219445 -6653724 + (T)n Simple_repeat Simple_repeat 1 23 0 2338 97 3 0 chr13 95220450 95220760 -6652409 + AluY SINE Alu 1 311 0 2043 126 7 0 chr13 95221212 95221514 -6651655 - AluY SINE Alu -3 308 5 242 327 55 9 chr13 95222410 95222520 -6650649 - MER94 DNA DNA -15 119 5 2335 96 0 16 chr13 95223081 95223395 -6649774 + AluY SINE Alu 1 309 -2 763 274 55 0 chr13 95223764 95223983 -6649186 + MIR SINE MIR 28 258 -4 245 282 14 70 chr13 95224056 95224127 -6649042 - MIR SINE MIR -110 98 32 458 88 0 0 chr13 95224378 95224446 -6648723 + L1PA5 LINE L1 6083 6150 -4 1003 161 31 0 chr13 95224652 95224845 -6648324 + L1MB2 LINE L1 5959 6157 -14 24 0 0 0 chr13 95224845 95224869 -6648300 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr13 95225470 95225500 -6647669 + AT_rich Low_complexity Low_complexity 1 30 0 183 258 21 10 chr13 95226375 95226472 -6646697 + (TATG)n Simple_repeat Simple_repeat 3 100 0 23 0 0 0 chr13 95228948 95228971 -6644198 + AT_rich Low_complexity Low_complexity 1 23 0 513 300 26 43 chr13 95230027 95230260 -6642909 + MIR SINE MIR 22 250 -12 21 0 0 0 chr13 95230357 95230378 -6642791 + AT_rich Low_complexity Low_complexity 1 21 0 7750 23 0 0 chr13 95230761 95231709 -6641460 + L1PA2 LINE L1 5208 6155 0 2355 50 0 3 chr13 95231900 95232218 -6640951 - AluY SINE Alu 0 317 1 274 121 77 22 chr13 95233453 95233544 -6639625 + (TA)n Simple_repeat Simple_repeat 2 97 0 2946 144 74 21 chr13 95233547 95233747 -6639422 + MER41C LTR ERV1 1 189 -365 2227 75 7 0 chr13 95233747 95234025 -6639144 - AluSc SINE Alu -14 295 16 2946 144 74 21 chr13 95234025 95234350 -6638819 + MER41C LTR ERV1 189 554 0 1993 44 4 0 chr13 95235648 95235896 -6637273 + L1PA4 LINE L1 5907 6155 0 195 354 79 16 chr13 95236451 95236578 -6636591 + MIR SINE MIR 30 164 -98 186 349 35 23 chr13 95236673 95236759 -6636410 - L2 LINE L2 -27 3245 3159 189 319 0 21 chr13 95236953 95237000 -6636169 + L2 LINE L2 3134 3179 -93 5988 20 0 1 chr13 95237059 95237752 -6635417 - L1PA3 LINE L1 -1 6154 5463 282 289 133 16 chr13 95237776 95237904 -6635265 - MIR SINE MIR -60 202 60 551 317 46 21 chr13 95238199 95238439 -6634730 + MIR SINE MIR 2 247 -15 256 378 0 0 chr13 95238583 95238665 -6634504 - L2 LINE L2 -3 3269 3188 1642 193 3 7 chr13 95238813 95239118 -6634051 + AluJo SINE Alu 1 304 -8 461 332 42 5 chr13 95239123 95239313 -6633856 - MIR SINE MIR -10 252 56 1987 163 97 8 chr13 95239370 95239763 -6633406 + MSTA LTR MaLR 1 428 0 1084 325 58 24 chr13 95240020 95240568 -6632601 + L3 LINE CR1 795 1361 -216 236 120 20 0 chr13 95240587 95240637 -6632532 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 1128 99 13 0 chr13 95242507 95242658 -6630511 - AluSg/x SINE Alu -15 295 143 1040 94 0 0 chr13 95242661 95242788 -6630381 + AluSq/x SINE Alu 9 135 -177 5609 64 26 57 chr13 95244026 95244920 -6628249 + SVA Other Other 1 866 -520 6435 70 28 26 chr13 95244931 95245886 -6627283 + SVA Other Other 430 1386 0 201 39 0 0 chr13 95246544 95246570 -6626599 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 3186 86 8 20 chr13 95246570 95247058 -6626111 + L1P5 LINE L1 5310 5791 -360 332 265 24 0 chr13 95247074 95247157 -6626012 - L1MC4 LINE L1 -1340 6702 6618 2162 148 30 0 chr13 95247335 95247708 -6625461 + L1PB1 LINE L1 5767 6150 -1 2312 111 7 0 chr13 95248139 95248445 -6624724 + AluSq SINE Alu 1 308 -5 2306 85 0 25 chr13 95248445 95248760 -6624409 + AluSq SINE Alu 1 308 -5 225 357 46 58 chr13 95250471 95250712 -6622457 + L2 LINE L2 2950 3187 -85 23 0 0 0 chr13 95250782 95250805 -6622364 + AT_rich Low_complexity Low_complexity 1 23 0 385 305 66 23 chr13 95251616 95251803 -6621366 - MIR3 SINE MIR -65 143 1 214 300 67 0 chr13 95252166 95252226 -6620943 - MIR SINE MIR -7 255 192 207 154 19 19 chr13 95253337 95253389 -6619780 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1697 130 0 34 chr13 95253706 95253968 -6619201 + AluSq SINE Alu 35 287 -26 760 226 12 0 chr13 95254811 95254975 -6618194 - FRAM SINE Alu 0 166 1 23 33 0 0 chr13 95255614 95255644 -6617525 + AT_rich Low_complexity Low_complexity 1 30 0 201 325 102 45 chr13 95256146 95256303 -6616866 - L3b LINE CR1 -212 1371 1206 207 281 164 16 chr13 95256663 95256791 -6616378 + MIR SINE MIR 106 252 -10 2399 80 0 13 chr13 95259204 95259515 -6613654 - AluY SINE Alu -4 307 1 332 289 82 22 chr13 95259566 95259701 -6613468 - L2 LINE L2 -10 3303 3161 184 299 0 65 chr13 95261375 95261452 -6611717 + MIR SINE MIR 185 256 -6 230 299 0 0 chr13 95261953 95262020 -6611149 + GA-rich Low_complexity Low_complexity 3 69 0 253 122 44 66 chr13 95262579 95262760 -6610409 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 22 35 0 0 chr13 95262770 95262799 -6610370 + AT_rich Low_complexity Low_complexity 1 29 0 927 73 0 0 chr13 95263771 95263895 -6609274 + L1PA15 LINE L1 6032 6155 -10 2066 114 7 0 chr13 95264196 95264512 -6608657 + AluSx SINE Alu 1 318 0 1015 53 0 0 chr13 95265656 95265788 -6607381 + L1PA4 LINE L1 6023 6154 -1 186 43 0 0 chr13 95265858 95265881 -6607288 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 33959 88 4 6 chr13 95265931 95270741 -6602428 - HERV9 LTR ERV1 -3541 4858 58 5870 76 68 6 chr13 95270765 95271543 -6601626 - LTR12 LTR ERV1 0 826 1 2338 202 13 36 chr13 95271990 95272515 -6600654 - MLT2B2 LTR ERVL -2 513 1 1693 223 77 9 chr13 95272982 95273539 -6599630 - MER114 LTR ERV 0 648 54 24 0 0 0 chr13 95273594 95273618 -6599551 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 95273794 95273815 -6599354 + AT_rich Low_complexity Low_complexity 1 21 0 359 310 120 20 chr13 95274220 95274420 -6598749 + L1ME3A LINE L1 4902 5121 -1025 816 290 55 45 chr13 95274534 95275176 -6597993 + L1ME3A LINE L1 5298 5945 -225 221 259 59 24 chr13 95276101 95276186 -6596983 + MIR SINE MIR 121 208 -54 563 295 143 0 chr13 95276197 95276414 -6596755 + MIR SINE MIR 15 262 0 520 309 65 0 chr13 95276475 95276721 -6596448 + L1ME2 LINE L1 3280 3541 -2605 2153 123 0 0 chr13 95276721 95277013 -6596156 - AluSx SINE Alu -20 292 1 706 266 83 33 chr13 95277016 95277377 -6595792 + L1ME2 LINE L1 3629 4007 -2139 1009 269 85 32 chr13 95277383 95277818 -6595351 + MLT1C LTR MaLR 8 465 -2 540 259 143 11 chr13 95277823 95278109 -6595060 + L1ME2 LINE L1 4005 4328 -1818 256 31 0 0 chr13 95278267 95278299 -6594870 - THE1B LTR MaLR -248 116 85 208 213 64 0 chr13 95278332 95278426 -6594743 + (TA)n Simple_repeat Simple_repeat 2 101 0 740 254 129 17 chr13 95278439 95278903 -6594266 + L1ME2 LINE L1 4311 4826 -1320 902 224 88 41 chr13 95278968 95279311 -6593858 + L1ME2 LINE L1 5761 6119 -45 1631 207 14 14 chr13 95279768 95280125 -6593044 + MLT1A1 LTR MaLR 1 357 -8 1914 139 0 0 chr13 95280132 95280412 -6592757 - THE1B LTR MaLR 0 364 85 1999 148 130 5 chr13 95281399 95281777 -6591392 + MSTB LTR MaLR 2 426 0 357 24 0 0 chr13 95281991 95282033 -6591136 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2038 128 0 0 chr13 95282035 95282317 -6590852 - AluSq SINE Alu -30 283 2 2300 91 0 10 chr13 95282979 95283277 -6589892 - AluSg SINE Alu -15 295 1 235 297 0 0 chr13 95283893 95283967 -6589202 + L1ME LINE L1 5522 5595 -526 261 326 22 0 chr13 95284582 95284674 -6588495 - MIR SINE MIR -25 237 144 1904 185 68 32 chr13 95284693 95285136 -6588033 + LTR2B LTR ERV1 32 490 0 250 252 244 0 chr13 95285138 95285253 -6587916 - MIR SINE MIR -118 144 2 727 199 0 0 chr13 95285402 95285543 -6587626 - FLAM_C SINE Alu 0 143 3 675 356 63 22 chr13 95286058 95286516 -6586653 + L1MDb LINE L1 946 1422 -4987 1094 259 111 64 chr13 95286548 95286666 -6586503 + L1M4 LINE L1 2838 2949 -3197 1819 140 67 25 chr13 95286666 95287024 -6586145 + THE1C LTR MaLR 1 373 -2 1094 259 111 64 chr13 95287024 95287422 -6585747 + L1M4 LINE L1 2949 3327 -2819 2405 67 0 0 chr13 95287422 95287720 -6585449 + AluY SINE Alu 1 298 -13 1094 259 111 64 chr13 95287720 95287758 -6585411 + L1M4 LINE L1 3327 3362 -2784 2157 106 7 0 chr13 95287758 95288051 -6585118 + AluSq SINE Alu 1 295 -18 1094 259 111 64 chr13 95288051 95288532 -6584637 + L1M4 LINE L1 3362 3924 -2222 212 57 0 29 chr13 95288897 95288932 -6584237 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 879 55 0 0 chr13 95288932 95289041 -6584128 - L1PA4 LINE L1 -24 6131 6023 2058 114 7 0 chr13 95290183 95290499 -6582670 - AluSx SINE Alu 0 318 1 5684 106 56 6 chr13 95290800 95291712 -6581457 - L1PA15 LINE L1 -10 6155 5216 267 79 0 0 chr13 95293072 95293110 -6580059 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 787 69 2 0 chr13 95293110 95293214 -6579955 - L1PA8 LINE L1 -24 6148 6043 252 157 100 0 chr13 95293867 95293937 -6579232 + L1M4 LINE L1 5153 5229 -917 586 271 98 30 chr13 95294040 95294439 -6578730 - L1MEc LINE L1 -4050 2346 1921 189 0 0 0 chr13 95294527 95294548 -6578621 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 7765 16 0 0 chr13 95294557 95295671 -6577498 - L1PA2 LINE L1 0 6155 5061 750 198 6 43 chr13 95295967 95296129 -6577040 + AluJb SINE Alu 133 288 -24 35 54 0 0 chr13 95296129 95296185 -6576984 + AT_rich Low_complexity Low_complexity 1 56 0 2397 265 33 7 chr13 95296530 95297227 -6575942 - L1MB7 LINE L1 -9 6175 5461 310 176 54 40 chr13 95297247 95297321 -6575848 - L1MA4A LINE L1 -23 6280 6206 * 3254 230 54 12 chr13 95297318 95298411 -6574758 - L1MB7 LINE L1 -694 5470 4337 2943 183 18 28 chr13 95298434 95299042 -6574127 + MER7C DNA MER2_type 1 602 0 334 245 139 40 chr13 95299298 95299463 -6573706 + MIR SINE MIR 8 178 -30 259 325 41 24 chr13 95300523 95300646 -6572523 + MIR3 SINE MIR 58 182 -26 182 326 0 0 chr13 95301946 95301992 -6571177 + MIR3 SINE MIR 160 205 -3 677 263 5 48 chr13 95302011 95302197 -6570972 + MER45A DNA AcHobo 1 178 0 31 26 0 0 chr13 95302943 95302981 -6570188 + AT_rich Low_complexity Low_complexity 1 38 0 23454 172 39 60 chr13 95302983 95307398 -6565771 - L1PA14 LINE L1 -2 6159 1653 1442 182 114 15 chr13 95307398 95307739 -6565430 - THE1C LTR MaLR 0 375 1 23454 172 39 60 chr13 95307739 95308316 -6564853 - L1PA14 LINE L1 -4508 1653 1065 196 51 26 26 chr13 95308316 95308355 -6564814 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 23454 172 39 60 chr13 95308355 95309665 -6563504 - L1PA14 LINE L1 -5096 1065 1 269 269 37 0 chr13 95309686 95309794 -6563375 - L1MDa LINE L1 -4515 2025 1914 1920 260 84 19 chr13 95309820 95310661 -6562508 - L1ME2 LINE L1 -21 6143 5358 727 252 0 0 chr13 95310661 95310820 -6562349 - FRAM SINE Alu -7 159 1 1920 260 84 19 chr13 95310820 95311724 -6561445 - L1ME2 LINE L1 -806 5358 4226 312 303 70 54 chr13 95311759 95311944 -6561225 - MIR SINE MIR -73 189 2 724 270 70 10 chr13 95311973 95312173 -6560996 + MER82 DNA MER2_type 442 653 0 221 296 181 77 chr13 95312206 95312493 -6560676 - L2 LINE L2 -1139 2175 1859 832 271 95 42 chr13 95312507 95312939 -6560230 - MLT1G LTR MaLR 0 590 136 603 343 19 5 chr13 95312988 95313204 -6559965 - L2 LINE L2 -1730 1584 1366 710 163 7 0 chr13 95314419 95314560 -6558609 + GA-rich Low_complexity Low_complexity 3 144 0 1506 208 113 28 chr13 95315324 95315724 -6557445 + MER63B DNA MER1_type 1 434 -2 312 52 69 0 chr13 95317002 95317060 -6556109 + GA-rich Low_complexity Low_complexity 2 63 0 24581 34 5 0 chr13 95317682 95321475 -6551694 - L1PA3 LINE L1 -5 6150 2344 825 287 65 52 chr13 95321646 95322394 -6550775 - HAL1 LINE L1 -705 1802 1045 208 237 92 69 chr13 95322898 95323029 -6550140 - MIR SINE MIR -55 207 74 210 71 0 0 chr13 95323372 95323400 -6549769 + (TA)n Simple_repeat Simple_repeat 1 28 0 215 281 85 37 chr13 95323562 95323644 -6549525 + L3b LINE CR1 1264 1349 -234 189 74 0 0 chr13 95323807 95323834 -6549335 + (GA)n Simple_repeat Simple_repeat 2 28 0 2819 7 0 0 chr13 95324781 95325087 -6548082 - AluYa5 SINE Alu -5 306 1 401 325 0 0 chr13 95325346 95325469 -6547700 + LTR67 LTR ERVL 102 224 -333 568 244 28 51 chr13 95325514 95325731 -6547438 + LTR67 LTR ERVL 345 556 -1 22 0 0 0 chr13 95326354 95326376 -6546793 + AT_rich Low_complexity Low_complexity 1 22 0 1227 57 31 0 chr13 95326589 95326748 -6546421 - L1PA11 LINE L1 0 6174 6011 801 194 11 28 chr13 95327835 95328015 -6545154 + FRAM SINE Alu 1 176 0 308 148 16 0 chr13 95328018 95328079 -6545090 + A-rich Low_complexity Low_complexity 5 66 0 1460 157 61 35 chr13 95328276 95328589 -6544580 - THE1C LTR MaLR 0 375 55 374 160 0 13 chr13 95328596 95328671 -6544498 + (TA)n Simple_repeat Simple_repeat 1 74 0 289 282 0 0 chr13 95328672 95328757 -6544412 + L1MC4 LINE L1 6614 6698 -1344 201 211 0 0 chr13 95328762 95328814 -6544355 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 1460 123 0 0 chr13 95329187 95329420 -6543749 - AluSg/x SINE Alu 0 314 82 191 179 26 0 chr13 95331033 95331072 -6542097 - MIR SINE MIR -146 116 77 553 317 102 30 chr13 95331911 95332283 -6540886 - L1MC4a LINE L1 -1879 5929 5531 329 273 0 0 chr13 95332607 95332684 -6540485 + MLT1J LTR MaLR 68 144 -367 5475 188 32 29 chr13 95333542 95335475 -6537694 + L1MA9 LINE L1 4103 6044 -268 929 233 41 37 chr13 95335477 95335798 -6537371 + L1MA9 LINE L1 5983 6291 0 305 326 43 14 chr13 95336054 95336192 -6536977 + MIR SINE MIR 21 162 -100 21 36 0 0 chr13 95336329 95336357 -6536812 + AT_rich Low_complexity Low_complexity 1 28 0 515 273 17 40 chr13 95336701 95336877 -6536292 + MER5B DNA MER1_type 3 174 -4 351 265 250 0 chr13 95336890 95337026 -6536143 + MER5A DNA MER1_type 13 182 -7 194 339 46 0 chr13 95337208 95337273 -6535896 - L2 LINE L2 0 3272 3205 240 279 47 23 chr13 95338253 95338382 -6534787 + L1ME LINE L1 5787 5918 -203 335 320 75 19 chr13 95339199 95339394 -6533775 - MIR3 SINE MIR -58 204 2 393 75 0 0 chr13 95339484 95339537 -6533632 + (TA)n Simple_repeat Simple_repeat 1 53 0 1060 246 138 10 chr13 95339750 95340209 -6532960 - L1ME3A LINE L1 -213 5957 5407 339 192 0 55 chr13 95340211 95340284 -6532885 + MLT1D LTR MaLR 3 71 -434 389 286 151 12 chr13 95341776 95342035 -6531134 + L1MC4a LINE L1 5592 5886 -1922 5251 188 31 2 chr13 95342890 95343986 -6529183 - L1MC2 LINE L1 -34 6310 5183 1906 159 15 0 chr13 95345238 95345571 -6527598 + L1PB1 LINE L1 5814 6151 0 2349 102 3 6 chr13 95345580 95345924 -6527245 + L1PA14 LINE L1 5817 6159 -2 268 252 114 27 chr13 95346960 95347085 -6526084 + MIR3 SINE MIR 66 201 -7 320 238 24 12 chr13 95347290 95347374 -6525795 - MLT1D LTR MaLR -412 93 9 319 233 34 78 chr13 95347382 95347537 -6525632 - MLT1D-int LTR MaLR 0 1729 1248 24 0 0 0 chr13 95348317 95348341 -6524828 + AT_rich Low_complexity Low_complexity 1 24 0 8842 176 8 19 chr13 95348841 95349108 -6524061 + L1PB1 LINE L1 3106 3375 -2776 313 115 19 0 chr13 95349108 95349160 -6524009 + MADE1 DNA Mariner 1 53 -27 301 127 32 48 chr13 95349154 95349217 -6523952 + MADE1 DNA Mariner 11 72 -8 * 8842 176 8 19 chr13 95349160 95352014 -6521155 + L1PB1 LINE L1 3375 6151 0 202 333 50 0 chr13 95352031 95352091 -6521078 + L2 LINE L2 2237 2299 -1015 360 296 137 45 chr13 95352684 95353210 -6519959 - L1MEd LINE L1 -867 1623 1057 330 80 0 0 chr13 95353934 95353984 -6519185 + (CA)n Simple_repeat Simple_repeat 2 51 0 36 40 0 0 chr13 95354484 95354534 -6518635 + AT_rich Low_complexity Low_complexity 1 50 0 401 192 13 0 chr13 95354647 95354725 -6518444 - AluS SINE Alu -13 298 220 1551 109 18 0 chr13 95354935 95355155 -6518014 + AluSc SINE Alu 60 283 -26 441 0 0 0 chr13 95355155 95355204 -6517965 + (CA)n Simple_repeat Simple_repeat 2 50 0 215 77 0 26 chr13 95355203 95355242 -6517927 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 * 1574 189 3 10 chr13 95355355 95355662 -6517507 + L1MC1 LINE L1 6011 6315 -18 27 81 0 0 chr13 95357647 95357709 -6515460 + AT_rich Low_complexity Low_complexity 1 62 0 1860 274 124 35 chr13 95358406 95359317 -6513852 + L2 LINE L2 1876 2867 -447 8089 133 18 3 chr13 95360475 95361756 -6511413 - HSMAR2 DNA Mariner -1 1301 2 221 254 32 16 chr13 95362225 95362288 -6510881 + MIR3 SINE MIR 113 176 -32 183 162 0 0 chr13 95365014 95365051 -6508118 + (CA)n Simple_repeat Simple_repeat 2 38 0 284 312 167 14 chr13 95365448 95365663 -6507506 - L3 LINE CR1 -623 954 707 208 368 0 28 chr13 95365671 95365777 -6507392 + MIR SINE MIR 41 143 -65 24 0 0 0 chr13 95365837 95365861 -6507308 + AT_rich Low_complexity Low_complexity 1 24 0 439 315 115 54 chr13 95365952 95366491 -6506678 + L1ME4a LINE L1 4757 5328 -818 371 246 76 58 chr13 95366844 95367015 -6506154 - L3 LINE CR1 -1004 573 400 210 175 25 0 chr13 95367898 95367938 -6505231 + CT-rich Low_complexity Low_complexity 6 46 0 23 0 0 0 chr13 95368243 95368266 -6504903 + AT_rich Low_complexity Low_complexity 1 23 0 1509 141 40 11 chr13 95368268 95368545 -6504624 + L1MA5A LINE L1 6010 6294 -3 198 250 0 0 chr13 95369264 95369312 -6503857 - L2 LINE L2 -16 3256 3209 214 265 102 124 chr13 95369820 95370103 -6503066 + L2 LINE L2 2993 3269 -3 217 68 45 0 chr13 95371308 95371352 -6501817 + (TTTAA)n Simple_repeat Simple_repeat 4 49 0 1919 145 16 0 chr13 95371758 95372061 -6501108 - AluSx SINE Alu -4 308 1 524 296 108 0 chr13 95372123 95372437 -6500732 + L1ME4a LINE L1 5588 5935 -186 2110 138 16 37 chr13 95373283 95373666 -6499503 - THE1C LTR MaLR 0 375 1 181 435 54 0 chr13 95375536 95375628 -6497541 + L2 LINE L2 3160 3256 -16 259 276 67 19 chr13 95375960 95376065 -6497104 - L2 LINE L2 0 3272 3163 216 177 165 25 chr13 95376717 95376796 -6496373 - MIR SINE MIR -147 115 26 288 225 79 11 chr13 95377156 95377245 -6495924 - L2 LINE L2 -2 3270 3176 212 304 87 11 chr13 95380564 95380656 -6492513 + MIR SINE MIR 50 148 -60 2106 161 51 21 chr13 95380811 95381241 -6491928 - MER65A LTR ERV1 0 445 3 21 0 0 0 chr13 95381565 95381586 -6491583 + AT_rich Low_complexity Low_complexity 1 21 0 804 241 18 13 chr13 95381869 95382093 -6491076 + LTR65 LTR ERV1 167 391 -278 202 422 52 7 chr13 95384097 95384251 -6488918 + L2 LINE L2 2870 3030 -242 940 154 72 6 chr13 95384527 95384830 -6488339 - MSTD LTR MaLR 0 396 1 464 182 0 0 chr13 95385716 95385793 -6487376 - AluSg/x SINE Alu -27 282 206 1041 169 6 0 chr13 95385793 95385953 -6487216 - AluJb SINE Alu -149 163 3 22 0 0 0 chr13 95386574 95386596 -6486573 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 95386755 95386779 -6486390 + AT_rich Low_complexity Low_complexity 1 24 0 1935 242 21 12 chr13 95387332 95387890 -6485279 + L1MB8 LINE L1 2238 2800 -3346 * 3649 208 38 13 chr13 95387884 95388985 -6484184 + L1MB8 LINE L1 4971 6096 -82 437 256 29 7 chr13 95388986 95389123 -6484046 + L1M4 LINE L1 2577 2716 -3430 2044 140 8 17 chr13 95389176 95389534 -6483635 - THE1A LTR MaLR 0 355 1 2837 7 0 0 chr13 95391491 95391797 -6481372 + AluY SINE Alu 1 306 -5 232 313 25 25 chr13 95392017 95392097 -6481072 + L2 LINE L2 3234 3313 0 308 304 96 32 chr13 95392122 95392247 -6480922 + L2 LINE L2 3181 3313 0 445 89 16 89 chr13 95392584 95392665 -6480504 + (TC)n Simple_repeat Simple_repeat 1 72 -42 185 0 0 39 chr13 95392665 95392691 -6480478 + (CA)n Simple_repeat Simple_repeat 1 25 0 445 89 16 89 chr13 95392691 95392732 -6480437 + (TC)n Simple_repeat Simple_repeat 72 114 0 213 319 35 35 chr13 95393037 95393150 -6480019 + L2 LINE L2 3199 3311 -2 1386 231 16 3 chr13 95394334 95394654 -6478515 + L1MD3 LINE L1 7490 7813 -182 308 104 0 0 chr13 95395215 95395263 -6477906 - Alu SINE Alu -6 295 248 508 283 81 6 chr13 95395283 95395456 -6477713 + MER5A DNA MER1_type 4 189 0 921 272 9 0 chr13 95396647 95396864 -6476305 + MIR SINE MIR 26 244 -18 282 116 0 0 chr13 95396864 95396907 -6476262 + (TTA)n Simple_repeat Simple_repeat 2 44 0 293 292 146 0 chr13 95396919 95397015 -6476154 + L2 LINE L2 3163 3272 0 2109 125 0 0 chr13 95398675 95398979 -6474190 - AluSg SINE Alu -6 304 1 267 173 0 0 chr13 95399173 95399225 -6473944 + (TG)n Simple_repeat Simple_repeat 2 53 0 273 288 132 18 chr13 95399620 95399821 -6473348 + MIR3 SINE MIR 13 237 -25 270 73 0 0 chr13 95401467 95401508 -6471661 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 369 0 0 0 chr13 95401508 95401549 -6471620 + (CA)n Simple_repeat Simple_repeat 2 42 0 38 0 0 0 chr13 95402482 95402520 -6470649 + AT_rich Low_complexity Low_complexity 1 38 0 1570 166 24 0 chr13 95403237 95403526 -6469643 - L1M3 LINE L1 -576 5607 5312 565 264 30 12 chr13 95403733 95403900 -6469269 + Charlie7 DNA MER1_type 108 277 -2335 860 248 22 15 chr13 95403941 95404211 -6468958 + Charlie7 DNA MER1_type 400 671 -1941 1248 244 99 79 chr13 95404304 95405377 -6467792 + Charlie7 DNA MER1_type 1475 2568 -44 256 345 98 45 chr13 95405382 95406003 -6467166 + L2 LINE L2 2306 2959 -355 208 357 54 36 chr13 95406098 95406210 -6466959 + L2 LINE L2 3151 3264 -8 1149 217 60 42 chr13 95406865 95407201 -6465968 - MER2 DNA MER2_type -2 342 1 274 293 121 0 chr13 95408657 95408797 -6464372 - MIR SINE MIR -19 243 87 1897 173 3 0 chr13 95408890 95409190 -6463979 - AluJb SINE Alu -11 301 1 36 0 0 0 chr13 95409441 95409477 -6463692 + AT_rich Low_complexity Low_complexity 1 36 0 242 217 58 0 chr13 95411116 95411185 -6461984 + MER5A DNA MER1_type 33 105 -84 452 263 168 0 chr13 95412382 95412561 -6460608 - MIR SINE MIR -24 238 30 22 0 0 0 chr13 95412602 95412624 -6460545 + AT_rich Low_complexity Low_complexity 1 22 0 455 315 83 26 chr13 95413174 95413476 -6459693 - MLT1J LTR MaLR -7 504 186 384 394 78 7 chr13 95413672 95413956 -6459213 + L2 LINE L2 2874 3177 -95 201 121 0 0 chr13 95414572 95414605 -6458564 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr13 95414940 95414968 -6458201 + AT_rich Low_complexity Low_complexity 1 28 0 207 354 3 0 chr13 95415165 95415241 -6457928 - MIR SINE MIR -63 145 72 732 295 26 17 chr13 95416049 95416283 -6456886 - MIR SINE MIR -5 257 22 314 221 102 0 chr13 95416383 95416492 -6456677 + MER5A DNA MER1_type 23 150 -28 881 306 33 27 chr13 95419015 95419352 -6453817 + MLT1I LTR MaLR 69 407 -2 2200 217 98 11 chr13 95420261 95420800 -6452369 + MLT1E LTR MaLR 5 590 -3 464 162 40 10 chr13 95421896 95421995 -6451174 - MLT1G LTR MaLR -3 587 486 1197 269 66 28 chr13 95422266 95422647 -6450522 - MLT1G LTR MaLR -128 462 15 218 194 0 0 chr13 95422667 95422703 -6450466 + polypyrimidine Low_complexity Low_complexity 2 37 0 269 262 16 0 chr13 95422998 95423059 -6450110 + MIR SINE MIR 111 172 -90 28 61 0 0 chr13 95423173 95423222 -6449947 + AT_rich Low_complexity Low_complexity 1 49 0 2292 122 0 0 chr13 95423522 95423833 -6449336 + AluSx SINE Alu 1 311 -1 1636 170 30 7 chr13 95424703 95425003 -6448166 - AluJo SINE Alu -5 307 1 23 33 0 0 chr13 95426535 95426565 -6446604 + AT_rich Low_complexity Low_complexity 1 30 0 2104 99 14 10 chr13 95427500 95427793 -6445376 + AluSc SINE Alu 9 302 -7 1388 95 95 0 chr13 95428165 95428375 -6444794 - MER30 DNA MER1_type 0 230 1 221 333 88 42 chr13 95428559 95428751 -6444418 + MIR SINE MIR 2 202 -60 1676 181 14 10 chr13 95428814 95429106 -6444063 - AluJo SINE Alu -17 295 3 530 328 78 39 chr13 95429658 95430067 -6443102 - L3 LINE CR1 -22 1555 1131 1641 170 18 3 chr13 95431310 95431592 -6441577 + AluSx SINE Alu 1 286 -26 395 202 106 0 chr13 95431616 95431720 -6441449 + MIR SINE MIR 81 195 -67 2202 99 0 38 chr13 95432525 95432839 -6440330 + AluSx SINE Alu 4 305 -7 495 251 25 25 chr13 95433320 95433483 -6439686 + MER5B DNA MER1_type 3 165 -13 1973 100 4 7 chr13 95434399 95434670 -6438499 + AluSc SINE Alu 1 270 -39 22 80 0 0 chr13 95435667 95435717 -6437452 + AT_rich Low_complexity Low_complexity 1 50 0 47 19 0 0 chr13 95435914 95435968 -6437201 + AT_rich Low_complexity Low_complexity 1 54 0 606 89 0 0 chr13 95439193 95439283 -6433886 + (CTG)n Simple_repeat Simple_repeat 2 91 0 477 109 22 11 chr13 95439608 95439700 -6433469 + CT-rich Low_complexity Low_complexity 2 94 0 198 0 0 0 chr13 95439797 95439819 -6433350 + (GA)n Simple_repeat Simple_repeat 1 22 0 460 152 20 0 chr13 95440016 95440115 -6433054 + CT-rich Low_complexity Low_complexity 1 101 0 286 82 0 49 chr13 95440199 95440260 -6432909 + (CCG)n Simple_repeat Simple_repeat 1 58 0 57 16 0 0 chr13 95440487 95440551 -6432618 + GC_rich Low_complexity Low_complexity 1 64 0 1637 176 0 35 chr13 95444306 95444596 -6428573 - AluJo SINE Alu -26 286 7 192 177 89 76 chr13 95444957 95445036 -6428133 + MER5A DNA MER1_type 74 153 -36 974 196 0 23 chr13 95446324 95446538 -6426631 + AluSq SINE Alu 5 213 -100 259 86 0 52 chr13 95446753 95446811 -6426358 + (CCG)n Simple_repeat Simple_repeat 1 55 0 57 16 0 0 chr13 95447038 95447102 -6426067 + GC_rich Low_complexity Low_complexity 1 64 0 1637 176 0 35 chr13 95450857 95451147 -6422022 - AluJo SINE Alu -26 286 7 309 273 124 8 chr13 95451457 95451578 -6421591 - MER5A DNA MER1_type 0 189 55 185 188 88 88 chr13 95451508 95451588 -6421581 + MER5A DNA MER1_type 74 153 -36 * 2076 126 0 13 chr13 95452875 95453177 -6419992 + AluSx SINE Alu 5 302 -10 25 0 0 0 chr13 95454184 95454209 -6418960 + AT_rich Low_complexity Low_complexity 1 25 0 32 0 0 0 chr13 95454252 95454284 -6418885 + AT_rich Low_complexity Low_complexity 1 32 0 2373 286 69 17 chr13 95454329 95455171 -6417998 + L1PA15 LINE L1 1 886 -5901 * 14312 221 45 16 chr13 95455168 95456587 -6416582 + L1PA15 LINE L1 1323 2699 -4117 1584 173 67 14 chr13 95456587 95456870 -6416299 + AluJo SINE Alu 1 298 -14 14312 221 45 16 chr13 95456870 95458158 -6415011 + L1PA15 LINE L1 2699 3948 -2868 186 43 0 0 chr13 95458158 95458181 -6414988 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 14312 221 45 16 chr13 95458181 95460799 -6412370 + L1PA15 LINE L1 3948 6816 0 654 276 62 82 chr13 95461904 95462306 -6410863 - MLT1K LTR MaLR -1 587 194 301 408 0 13 chr13 95462798 95462955 -6410214 - MLT1K LTR MaLR -337 251 97 343 102 0 0 chr13 95464355 95464404 -6408765 + MADE1 DNA Mariner 1 49 -31 801 318 99 13 chr13 95465591 95465964 -6407205 + LTR16A LTR ERVL 51 457 0 377 291 178 17 chr13 95465966 95466207 -6406962 + HERV16 LTR ERVL 3 282 -4714 2192 112 154 44 chr13 95466328 95466377 -6406792 - MSTA LTR MaLR -2 426 384 2398 84 0 0 chr13 95466377 95466673 -6406496 - AluY SINE Alu -11 300 5 2192 112 154 44 chr13 95466673 95467007 -6406162 - MSTA LTR MaLR -44 384 1 8813 171 67 10 chr13 95467007 95468567 -6404602 - MSTA-int LTR MaLR 0 1651 2 2277 139 132 8 chr13 95468568 95468948 -6404221 - MSTA LTR MaLR 0 428 2 902 313 54 8 chr13 95469366 95469756 -6403413 + HERV16 LTR ERVL 916 1323 -3673 636 211 0 0 chr13 95470457 95470585 -6402584 - L1MB3 LINE L1 -2 6181 6054 1768 153 53 20 chr13 95470630 95470930 -6402239 - AluJb SINE Alu -2 310 1 2549 21 0 0 chr13 95471111 95471390 -6401779 + L1PA2 LINE L1 5877 6155 0 213 39 0 0 chr13 95471466 95471492 -6401677 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 10574 80 2 6 chr13 95471542 95472899 -6400270 - HERV9 LTR ERV1 -3541 4858 3507 228 274 0 0 chr13 95473119 95473170 -6399999 + L2 LINE L2 3263 3313 0 322 281 8 4 chr13 95474150 95474414 -6398755 + (TG)n Simple_repeat Simple_repeat 1 265 0 457 296 11 0 chr13 95474458 95474634 -6398535 + (TG)n Simple_repeat Simple_repeat 2 179 0 198 0 0 0 chr13 95474697 95474719 -6398450 + (TG)n Simple_repeat Simple_repeat 2 23 0 1606 150 60 4 chr13 95476733 95476999 -6396170 + AluJb SINE Alu 5 285 -27 2123 114 7 7 chr13 95478781 95479089 -6394080 + AluSg SINE Alu 1 308 -2 28 86 0 0 chr13 95479231 95479301 -6393868 + AT_rich Low_complexity Low_complexity 1 70 0 1601 99 5 0 chr13 95480116 95480371 -6392798 - AluSc SINE Alu 0 325 70 4538 163 11 17 chr13 95480391 95481230 -6391939 + L1PA16 LINE L1 5333 6166 0 230 200 0 0 chr13 95481418 95481458 -6391711 + MER33 DNA MER1_type 4 43 -281 617 215 94 0 chr13 95481504 95481653 -6391516 - MER3 DNA MER1_type -46 163 1 512 380 20 0 chr13 95481821 95482066 -6391103 - MIR SINE MIR 0 262 13 23 54 0 0 chr13 95483318 95483355 -6389814 + AT_rich Low_complexity Low_complexity 1 37 0 231 342 52 47 chr13 95483799 95483992 -6389177 - MIR SINE MIR -66 196 3 2045 184 67 22 chr13 95484699 95485144 -6388025 + MLT1C LTR MaLR 1 465 -2 225 361 36 0 chr13 95486002 95486085 -6387084 - MIR SINE MIR -149 113 28 2036 136 3 3 chr13 95486349 95486650 -6386519 + AluSx SINE Alu 1 301 -11 249 284 42 21 chr13 95487367 95487453 -6385716 - MIR SINE MIR -76 132 42 1961 164 0 0 chr13 95487453 95487751 -6385418 + AluSx SINE Alu 1 298 -14 251 205 82 98 chr13 95488595 95488717 -6384452 + MIR SINE MIR 108 227 -35 2408 78 6 3 chr13 95489062 95489384 -6383785 - L1PA6 LINE L1 -1 6153 5831 2150 51 0 0 chr13 95489384 95489641 -6383528 + L1P2 LINE L1 5492 5748 -406 3406 25 0 0 chr13 95490491 95490897 -6382272 - L1P LINE L1 -956 5190 4785 318 258 125 83 chr13 95491023 95491287 -6381882 - L1MEc LINE L1 -2887 3328 3054 342 352 11 11 chr13 95492387 95492566 -6380603 - L1MEc LINE L1 -3627 2588 2410 26 82 0 0 chr13 95492746 95492807 -6380362 + AT_rich Low_complexity Low_complexity 1 61 0 200 139 28 0 chr13 95494023 95494059 -6379110 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 21 57 0 0 chr13 95494377 95494412 -6378757 + AT_rich Low_complexity Low_complexity 1 35 0 643 336 45 43 chr13 95494567 95495192 -6377977 - L1MEc LINE L1 -5736 660 35 626 312 74 51 chr13 95495251 95495722 -6377447 + L1PBb LINE L1 13 494 -6355 320 373 105 54 chr13 95495777 95496053 -6377116 + L1PBb LINE L1 667 956 -5893 349 355 57 82 chr13 95496321 95496687 -6376482 + L1PBb LINE L1 757 1113 -5736 243 186 0 0 chr13 95496782 95496825 -6376344 + L1PA15-16 LINE L1 1521 1563 -5286 * 9244 239 24 25 chr13 95496811 95500660 -6372509 + L1PBb LINE L1 1335 5188 -1660 270 0 0 0 chr13 95500660 95500690 -6372479 + (TA)n Simple_repeat Simple_repeat 2 31 0 1963 101 13 49 chr13 95500693 95501001 -6372168 - AluSg SINE Alu -13 297 1 9244 239 24 25 chr13 95501001 95501083 -6372086 + L1PBb LINE L1 5190 5348 -1500 * 14890 165 23 14 chr13 95501073 95505548 -6367621 + L1MA9 LINE L1 2656 7162 -562 3856 85 194 0 chr13 95505548 95506124 -6367045 - LTR12 LTR ERV1 0 688 1 14890 165 23 14 chr13 95506124 95506168 -6367001 + L1MA9 LINE L1 7162 7204 -520 2559 194 4 2 chr13 95506167 95506698 -6366471 + L1 LINE L1 4784 5315 -831 * 1200 175 60 0 chr13 95507938 95508044 -6365125 + L1MA9 LINE L1 7465 7563 -168 216 0 0 0 chr13 95508044 95508068 -6365101 + (CA)n Simple_repeat Simple_repeat 1 24 0 1200 175 60 0 chr13 95508068 95508213 -6364956 + L1MA9 LINE L1 7563 7731 0 561 101 242 0 chr13 95508411 95508510 -6364659 + L1MA1 LINE L1 6180 6302 0 200 273 0 0 chr13 95509522 95509566 -6363603 + (TG)n Simple_repeat Simple_repeat 1 44 0 315 71 0 0 chr13 95510614 95510656 -6362513 + (CA)n Simple_repeat Simple_repeat 1 42 0 256 180 0 43 chr13 95510659 95510728 -6362441 + L1MC4 LINE L1 2006 6986 -1336 216 214 0 0 chr13 95510740 95510782 -6362387 + (TA)n Simple_repeat Simple_repeat 2 43 0 340 318 17 17 chr13 95511337 95511513 -6361656 + L1ME3A LINE L1 5808 5983 -187 232 229 0 100 chr13 95512223 95512293 -6360876 - L2 LINE L2 0 3313 3251 30 27 0 0 chr13 95513730 95513767 -6359402 + AT_rich Low_complexity Low_complexity 1 37 0 591 288 101 31 chr13 95514414 95514702 -6358467 + MLT1K LTR MaLR 281 588 0 1442 233 37 27 chr13 95515074 95515478 -6357691 - MLT1C LTR MaLR -51 406 11 820 220 66 26 chr13 95515537 95515841 -6357328 + L1MB5 LINE L1 2034 2349 -4035 3189 258 33 9 chr13 95515846 95516937 -6356232 + L1MB5 LINE L1 2387 3503 -2879 1460 204 12 3 chr13 95517007 95517340 -6355829 + L1MB5 LINE L1 5101 5436 -946 1130 221 8 41 chr13 95517443 95517710 -6355459 + L1MB5 LINE L1 6153 6410 0 227 145 171 92 chr13 95520243 95520319 -6352850 + MSTB LTR MaLR 1 82 -344 2445 77 57 0 chr13 95520333 95520669 -6352500 + THE1A LTR MaLR 1 355 0 21 36 0 0 chr13 95522190 95522218 -6350951 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr13 95524974 95525019 -6348150 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr13 95525374 95525418 -6347751 + AT_rich Low_complexity Low_complexity 1 44 0 1522 239 71 11 chr13 95525429 95525868 -6347301 + MLT1C LTR MaLR 3 467 0 315 49 0 0 chr13 95526969 95527010 -6346159 + (TG)n Simple_repeat Simple_repeat 2 42 0 904 194 17 6 chr13 95527808 95527983 -6345186 - MER45A DNA AcHobo -1 177 1 2574 114 70 0 chr13 95528143 95528572 -6344597 + L1MA1 LINE L1 5844 6302 0 300 176 24 35 chr13 95529013 95529098 -6344071 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 1852 162 0 0 chr13 95529215 95529511 -6343658 + AluSx SINE Alu 1 296 -16 35 24 0 0 chr13 95529511 95529553 -6343616 + AT_rich Low_complexity Low_complexity 1 42 0 231 146 0 0 chr13 95529714 95529755 -6343414 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr13 95529744 95529773 -6343396 + AT_rich Low_complexity Low_complexity 1 29 0 * 2107 196 46 31 chr13 95530738 95531217 -6341952 + MER66B LTR ERV1 1 486 0 26020 33 0 0 chr13 95531609 95534903 -6338266 + L1P LINE L1 1755 5048 -1098 2028 214 36 24 chr13 95584944 95585885 -6287284 - L1M4 LINE L1 -357 6097 5145 3189 258 33 9 chr13 95585955 95587046 -6286123 - L1M4 LINE L1 -2879 3547 2431 820 220 66 26 chr13 95587051 95587355 -6285814 - L1M4 LINE L1 -4035 2393 2078 1442 233 37 27 chr13 95587414 95587818 -6285351 + MLT1C LTR MaLR 11 314 -51 467 280 86 16 chr13 95588352 95588538 -6284631 - MLT1K LTR MaLR -109 479 281 30 27 0 0 chr13 95589185 95589222 -6283947 + AT_rich Low_complexity Low_complexity 1 37 0 232 252 28 93 chr13 95590609 95590716 -6282453 + MIR SINE MIR 156 255 -7 340 318 17 17 chr13 95591439 95591615 -6281554 - L1ME3A LINE L1 -187 5983 5808 216 214 0 0 chr13 95592170 95592212 -6280957 + (TA)n Simple_repeat Simple_repeat 2 43 0 256 180 0 43 chr13 95592224 95592293 -6280876 - L1MC4 LINE L1 -1336 6986 2006 297 75 0 0 chr13 95592296 95592336 -6280833 + (TG)n Simple_repeat Simple_repeat 1 40 0 200 273 0 0 chr13 95593384 95593428 -6279741 + (CA)n Simple_repeat Simple_repeat 1 44 0 561 101 242 0 chr13 95594440 95594539 -6278630 - L1MA1 LINE L1 0 6302 6180 1200 175 60 0 chr13 95594737 95594882 -6278287 - L1MA9 LINE L1 0 6312 6144 234 0 0 0 chr13 95594882 95594908 -6278261 + (TG)n Simple_repeat Simple_repeat 1 26 0 1200 175 60 0 chr13 95594908 95595014 -6278155 - L1MA9 LINE L1 -168 6144 6046 2068 196 46 31 chr13 95596503 95596982 -6276187 - MER66B LTR ERV1 0 486 1 231 146 0 0 chr13 95597965 95598006 -6275163 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 35 24 0 0 chr13 95598167 95598209 -6274960 + AT_rich Low_complexity Low_complexity 1 42 0 1852 162 0 0 chr13 95598209 95598505 -6274664 - AluSx SINE Alu -16 296 1 300 176 24 35 chr13 95598622 95598707 -6274462 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 6685 131 25 2 chr13 95599148 95600632 -6272537 - L1MA1 LINE L1 0 7005 5487 * 14565 165 26 15 chr13 95600631 95600675 -6272494 - L1M1 LINE L1 -520 7204 7162 3984 81 289 0 chr13 95600675 95601316 -6271853 + LTR12 LTR ERV1 1 826 0 14565 165 26 15 chr13 95601316 95605782 -6267387 - L1M1 LINE L1 -562 7162 2656 9020 233 22 26 chr13 95605772 95605854 -6267315 - L1MA1 LINE L1 -1500 5349 5268 * 1985 97 13 49 chr13 95605854 95606162 -6267007 + AluSg SINE Alu 1 297 -13 234 0 0 0 chr13 95606165 95606191 -6266978 + (TA)n Simple_repeat Simple_repeat 2 27 0 9020 233 22 26 chr13 95606191 95609449 -6263720 - L1MA1 LINE L1 -1583 5266 2019 1159 218 7 51 chr13 95609561 95609855 -6263314 + L1MB5 LINE L1 5894 6174 0 227 145 171 92 chr13 95612388 95612464 -6260705 + MSTB LTR MaLR 1 82 -344 2445 77 57 0 chr13 95612478 95612814 -6260355 + THE1A LTR MaLR 1 355 0 21 36 0 0 chr13 95614335 95614363 -6258806 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr13 95617129 95617174 -6255995 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr13 95617529 95617573 -6255596 + AT_rich Low_complexity Low_complexity 1 44 0 1522 239 71 11 chr13 95617584 95618023 -6255146 + MLT1C LTR MaLR 3 467 0 333 47 0 0 chr13 95619124 95619167 -6254002 + (TG)n Simple_repeat Simple_repeat 2 44 0 904 194 17 6 chr13 95619965 95620140 -6253029 - MER45A DNA AcHobo -1 177 1 733 198 6 43 chr13 95620395 95620557 -6252612 + AluJb SINE Alu 133 288 -24 35 54 0 0 chr13 95620557 95620613 -6252556 + AT_rich Low_complexity Low_complexity 1 56 0 2452 265 33 7 chr13 95620958 95621655 -6251514 - L1MB7 LINE L1 -9 6175 5461 315 176 54 40 chr13 95621675 95621749 -6251420 - L1MA4A LINE L1 -23 6280 6206 * 3333 233 53 11 chr13 95621746 95622839 -6250330 - L1MB7 LINE L1 -692 5470 4337 2928 183 18 28 chr13 95622862 95623470 -6249699 + MER7C DNA MER2_type 1 602 0 332 248 137 38 chr13 95623726 95623891 -6249278 + MIR SINE MIR 8 178 -30 258 325 41 24 chr13 95624951 95625074 -6248095 + MIR3 SINE MIR 58 182 -26 183 326 0 0 chr13 95626367 95626413 -6246756 + MIR3 SINE MIR 160 205 -3 674 263 5 48 chr13 95626432 95626618 -6246551 + MER45A DNA AcHobo 1 178 0 31 26 0 0 chr13 95627363 95627401 -6245768 + AT_rich Low_complexity Low_complexity 1 38 0 16926 177 22 3 chr13 95627403 95631565 -6241604 - L1PA14 LINE L1 -2 6159 1925 26 30 0 0 chr13 95631639 95631672 -6241497 + AT_rich Low_complexity Low_complexity 1 33 0 1437 182 114 15 chr13 95631818 95632159 -6241010 - THE1C LTR MaLR 0 375 1 2306 74 3 0 chr13 95633011 95633333 -6239836 - AluY SINE Alu 0 323 1 278 302 32 32 chr13 95633371 95633560 -6239609 + L1MC/D LINE L1 5256 5444 -2364 207 178 69 30 chr13 95634421 95634522 -6238647 + (TATATG)n Simple_repeat Simple_repeat 4 108 0 387 255 0 10 chr13 95634805 95634907 -6238262 - L1MEc LINE L1 -6261 135 35 974 323 72 36 chr13 95635071 95635366 -6237803 + HERVL LTR ERVL 1763 2046 -3608 2217 118 30 24 chr13 95635366 95635739 -6237430 - THE1C LTR MaLR 0 375 1 974 323 72 36 chr13 95635739 95636483 -6236686 + HERVL LTR ERVL 2046 2917 -2737 1912 194 5 22 chr13 95636483 95636854 -6236315 - MLT1A1 LTR MaLR 0 365 1 974 323 72 36 chr13 95636854 95637242 -6235927 + HERVL LTR ERVL 2917 3290 -2364 617 291 59 28 chr13 95637543 95637825 -6235344 + HERVL LTR ERVL 3683 3972 -1513 967 296 20 30 chr13 95637894 95638289 -6234880 + HERVL LTR ERVL 4111 4501 -1263 9915 174 89 105 chr13 95638342 95641739 -6231430 - L1 LINE L1 -1992 5573 2121 1663 190 7 0 chr13 95641739 95642038 -6231131 - AluJb SINE Alu 0 306 6 9915 174 89 105 chr13 95642038 95642211 -6230958 - L1 LINE L1 -5444 2121 1947 2216 129 34 0 chr13 95642211 95642561 -6230608 + THE1B LTR MaLR 1 362 -2 11267 100 11 18 chr13 95642563 95642613 -6230556 + THE1B-int LTR MaLR 1 50 -1530 2371 75 0 16 chr13 95642613 95642919 -6230250 + AluY SINE Alu 1 301 -10 11267 100 11 18 chr13 95642919 95643727 -6229442 + THE1B-int LTR MaLR 50 845 -735 1968 144 7 3 chr13 95643727 95644018 -6229151 + AluSg SINE Alu 1 292 -18 11267 100 11 18 chr13 95644018 95644749 -6228420 + THE1B-int LTR MaLR 845 1580 0 2167 145 31 17 chr13 95644749 95645108 -6228061 + THE1B LTR MaLR 1 364 0 9915 174 89 105 chr13 95645108 95646837 -6226332 - L1 LINE L1 -5617 1948 12 273 309 78 50 chr13 95648856 95649380 -6223789 - L1ME LINE L1 -327 5818 5280 2010 116 10 10 chr13 95649398 95649690 -6223479 - AluY SINE Alu -19 292 1 3871 199 13 39 chr13 95649786 95650436 -6222733 - L1MD1 LINE L1 0 6636 5971 2185 121 7 0 chr13 95650436 95650734 -6222435 - AluSx SINE Alu -12 300 1 3871 199 13 39 chr13 95650734 95650910 -6222259 - L1MD1 LINE L1 -665 5971 5792 2238 119 0 0 chr13 95650910 95651204 -6221965 - AluSx SINE Alu -16 296 3 3871 199 13 39 chr13 95651204 95651431 -6221738 - L1MD1 LINE L1 -844 5792 5608 1939 223 56 53 chr13 95651454 95652290 -6220879 - L1MD1 LINE L1 -4045 2495 1657 416 276 138 35 chr13 95652326 95652674 -6220495 - L1MD1 LINE L1 -5708 313 118 475 296 6 6 chr13 95652751 95652920 -6220249 - L1ME LINE L1 -1979 4150 3982 613 305 158 40 chr13 95652963 95653595 -6219574 - L1ME LINE L1 -2194 3935 3229 2084 115 7 10 chr13 95653617 95653905 -6219264 - AluSx SINE Alu -25 287 1 495 267 32 46 chr13 95653996 95654127 -6219042 - L1ME LINE L1 -2886 3243 3115 1925 127 0 8 chr13 95654127 95654394 -6218775 - AluSq SINE Alu -28 285 21 495 267 32 46 chr13 95654394 95654479 -6218690 - L1ME LINE L1 -3014 3115 3030 2254 111 36 30 chr13 95654706 95655068 -6218101 + THE1B LTR MaLR 1 364 0 369 303 94 43 chr13 95655307 95655639 -6217530 - L1MEc LINE L1 -4433 1696 1360 1247 233 78 34 chr13 95655671 95656061 -6217108 + MLT1D LTR MaLR 5 470 -105 413 197 62 2 chr13 95656190 95656296 -6216873 + MLT1D LTR MaLR 387 478 -27 304 286 89 86 chr13 95656342 95656611 -6216558 - L1MEc LINE L1 -4909 1210 941 498 102 37 9 chr13 95656653 95656761 -6216408 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 1530 180 55 4 chr13 95656786 95657041 -6216128 - AluJo SINE Alu -44 268 1 425 344 57 81 chr13 95657045 95657539 -6215630 - L1MEc LINE L1 -5215 904 423 477 243 9 63 chr13 95658108 95658330 -6214839 + L1MC5 LINE L1 7720 7929 -32 4278 63 21 6 chr13 95659662 95660681 -6212488 + MER11A LTR ERVK 1 1266 0 549 197 87 1 chr13 95661619 95661832 -6211337 + MER65A LTR ERV1 180 441 -4 757 233 80 45 chr13 95661966 95662279 -6210890 + MER33 DNA MER1_type 1 324 0 1224 173 18 0 chr13 95662471 95662691 -6210478 + L1PA15-16 LINE L1 2 225 -6624 * 1357 228 30 30 chr13 95662669 95663003 -6210166 + L1PA15-16 LINE L1 772 1105 -5744 * 2890 259 22 11 chr13 95663001 95664043 -6209126 + L1PA15-16 LINE L1 2912 3964 -2885 280 226 75 118 chr13 95664462 95664794 -6208375 - L1MC5 LINE L1 -32 7929 7612 424 289 193 35 chr13 95664804 95665032 -6208137 - L2 LINE L2 -961 2353 2090 2192 108 0 23 chr13 95665225 95665531 -6207638 - AluSx SINE Alu -13 299 1 256 360 137 7 chr13 95666666 95666819 -6206350 + MIR SINE MIR 34 206 -56 1550 43 0 0 chr13 95666857 95667042 -6206127 - AluY SINE Alu -126 185 1 2494 100 24 14 chr13 95668067 95668438 -6204731 + THE1C LTR MaLR 1 375 0 1900 97 15 0 chr13 95668462 95668731 -6204438 - L1PA13 LINE L1 -11 6152 5880 593 199 3 0 chr13 95669433 95669773 -6203396 + (TG)n Simple_repeat Simple_repeat 1 341 0 467 299 152 0 chr13 95671083 95671287 -6201882 - MIR SINE MIR -11 251 17 558 271 24 24 chr13 95672513 95672558 -6200611 - MER20B DNA MER1_type -3 780 736 2194 103 0 0 chr13 95672558 95672860 -6200309 - AluSc SINE Alu 0 302 1 558 271 24 24 chr13 95672860 95673060 -6200109 - MER20B DNA MER1_type -46 737 534 2501 186 89 65 chr13 95673073 95673783 -6199386 - LTR8A LTR ERV1 0 727 1 402 224 75 0 chr13 95673796 95673902 -6199267 - MER20B DNA MER1_type -635 148 35 600 224 8 0 chr13 95673902 95674027 -6199142 + MER72 LTR ERV1 1 126 -596 1685 145 187 11 chr13 95674035 95674393 -6198776 - MSTA LTR MaLR 0 428 8 * 3131 166 7 1 chr13 95674388 95674928 -6198241 + MER72 LTR ERV1 121 664 -58 644 228 14 14 chr13 95674941 95675086 -6198083 - FRAM SINE Alu -31 145 1 540 70 0 0 chr13 95675087 95675158 -6198011 + MER72 LTR ERV1 650 720 -2 398 262 16 8 chr13 95675625 95675751 -6197418 + L1MC5 LINE L1 7310 7436 -525 6587 179 43 28 chr13 95676803 95678338 -6194831 + L1MC3 LINE L1 5488 7045 -740 232 111 0 0 chr13 95678386 95678422 -6194747 + L1P LINE L1 5132 5167 -979 256 224 63 46 chr13 95678611 95678785 -6194384 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 227 243 57 45 chr13 95679049 95679226 -6193943 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 185 108 27 0 chr13 95679969 95680006 -6193163 + A-rich Low_complexity Low_complexity 2 39 0 364 224 47 12 chr13 95680788 95680873 -6192296 + MIR SINE MIR 37 124 -138 2194 127 0 0 chr13 95681026 95681326 -6191843 - AluJb SINE Alu -12 300 1 184 388 87 10 chr13 95681724 95681827 -6191342 - L2 LINE L2 -23 3249 3139 1418 204 79 57 chr13 95681964 95682480 -6190689 - MER67C LTR ERV1 -3 511 4 22 0 0 0 chr13 95682653 95682675 -6190494 + AT_rich Low_complexity Low_complexity 1 22 0 300 302 85 8 chr13 95682778 95682907 -6190262 - MIR SINE MIR -89 173 35 273 277 114 43 chr13 95683750 95683934 -6189235 - MLT1L LTR MaLR -236 379 183 383 336 69 9 chr13 95684745 95684962 -6188207 - L1MC4a LINE L1 -1883 5925 5696 1973 127 47 50 chr13 95684980 95685319 -6187850 - MER1B DNA MER1_type -1 338 1 341 323 86 36 chr13 95685324 95685808 -6187361 - L1MC4a LINE L1 -758 5388 5181 573 241 30 6 chr13 95686075 95686241 -6186928 + HAL1 LINE L1 81 250 -2257 251 243 29 0 chr13 95686574 95686644 -6186525 - MER69 DNA AcHobo -2411 115 44 1557 215 40 6 chr13 95687379 95687732 -6185437 + MLT1A1 LTR MaLR 1 365 0 638 80 11 0 chr13 95688254 95688342 -6184827 + AluSq/x SINE Alu 17 105 -208 496 160 0 0 chr13 95688342 95688417 -6184752 + AluSg/x SINE Alu 207 281 -31 463 313 83 10 chr13 95688491 95688683 -6184486 - MIR SINE MIR -44 218 13 25 0 0 0 chr13 95690210 95690235 -6182934 + AT_rich Low_complexity Low_complexity 1 25 0 181 203 25 114 chr13 95690461 95690540 -6182629 - L2 LINE L2 -106 3207 3136 240 274 68 0 chr13 95690831 95690904 -6182265 - MLT1I LTR MaLR -10 399 322 1625 189 55 34 chr13 95691581 95691962 -6181207 - MLT1B LTR MaLR -1 389 1 183 297 47 0 chr13 95692285 95692349 -6180820 + MIR SINE MIR 123 189 -73 420 223 0 41 chr13 95693761 95693882 -6179287 + Zaphod DNA AcHobo 2337 2452 -1579 * 1285 237 103 14 chr13 95693878 95694392 -6178777 + Zaphod DNA AcHobo 3248 3807 -224 243 0 0 0 chr13 95694782 95694809 -6178360 + (T)n Simple_repeat Simple_repeat 1 27 0 649 154 0 0 chr13 95695097 95695214 -6177955 - L1MA8 LINE L1 -172 6119 6003 625 183 52 0 chr13 95695218 95695371 -6177798 + L1MA8 LINE L1 6131 6291 0 607 253 0 7 chr13 95697963 95698109 -6175060 + L1ME1 LINE L1 5883 6027 -139 1742 181 82 24 chr13 95698109 95698637 -6174532 - MLT2A2 LTR ERVL 0 554 2 296 248 120 8 chr13 95698645 95698762 -6174407 + L1ME1 LINE L1 6032 6161 -5 334 263 105 0 chr13 95699149 95699244 -6173925 + MIR SINE MIR 56 160 -102 280 324 28 51 chr13 95700071 95700247 -6172922 - MIR SINE MIR -49 213 42 299 309 0 0 chr13 95700334 95700402 -6172767 + L2 LINE L2 3246 3313 0 2445 93 0 0 chr13 95700570 95700881 -6172288 + AluSq SINE Alu 1 311 -2 801 282 64 4 chr13 95701005 95701239 -6171930 + MIR SINE MIR 3 250 -12 3826 126 48 5 chr13 95701950 95702537 -6170632 - LTR9 LTR ERV1 0 612 1 329 295 9 54 chr13 95703049 95703161 -6170008 - MIR SINE MIR -62 146 40 634 291 20 0 chr13 95703546 95703749 -6169420 + MLT1-int LTR MaLR 395 601 -770 248 208 0 14 chr13 95704560 95704632 -6168537 + (TA)n Simple_repeat Simple_repeat 1 71 0 245 294 59 0 chr13 95704639 95704724 -6168445 + L1ME LINE L1 2675 2764 -3382 1605 316 53 62 chr13 95704837 95705705 -6167464 + ERVL LTR ERVL 4208 5063 -701 4051 130 14 20 chr13 95705705 95706353 -6166816 - LTR9B LTR ERV1 0 644 1 1605 316 53 62 chr13 95706353 95706713 -6166456 + ERVL LTR ERVL 5063 5425 -339 252 337 22 11 chr13 95707021 95707110 -6166059 + LTR67 LTR ERVL 99 188 -369 476 200 0 0 chr13 95707530 95707615 -6165554 - FLAM SINE Alu -16 127 43 2378 86 0 0 chr13 95707836 95708138 -6165031 + AluSc SINE Alu 1 302 -7 2221 115 3 3 chr13 95708180 95708492 -6164677 - AluSx SINE Alu 0 312 1 766 302 93 30 chr13 95708494 95709492 -6163677 + L1ME LINE L1 4476 5540 -630 241 331 92 28 chr13 95709731 95709873 -6163296 - L3 LINE CR1 -154 1423 1273 225 360 54 20 chr13 95709959 95710106 -6163063 - L3 LINE CR1 -440 1137 986 279 384 26 16 chr13 95711199 95711389 -6161780 - L2 LINE L2 -257 3015 2824 1825 138 51 41 chr13 95711573 95711951 -6161218 - THE1C LTR MaLR -4 424 1 295 310 48 41 chr13 95712263 95712408 -6160761 + L2 LINE L2 3167 3312 -1 242 326 102 41 chr13 95713661 95713857 -6159312 - MIR SINE MIR -52 210 3 219 312 39 0 chr13 95713868 95713945 -6159224 + MIR3 SINE MIR 129 208 0 2127 98 4 0 chr13 95714099 95714411 -6158758 + AluSx SINE Alu 6 318 0 23 0 0 0 chr13 95715799 95715822 -6157347 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 95716045 95716069 -6157100 + AT_rich Low_complexity Low_complexity 1 24 0 289 263 179 11 chr13 95716259 95716354 -6156815 - MIR3 SINE MIR -22 186 76 417 322 53 44 chr13 95717354 95717662 -6155507 + L1ME1 LINE L1 5381 5696 -470 2211 93 7 0 chr13 95717662 95717951 -6155218 + AluSx SINE Alu 12 302 -10 417 322 53 44 chr13 95717951 95718140 -6155029 + L1ME1 LINE L1 5696 5882 -284 210 143 0 0 chr13 95718299 95718334 -6154835 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 220 0 0 chr13 95718608 95718667 -6154502 + CT-rich Low_complexity Low_complexity 3 61 0 22 0 0 0 chr13 95718755 95718777 -6154392 + AT_rich Low_complexity Low_complexity 1 22 0 182 61 0 82 chr13 95719015 95719064 -6154105 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 5663 148 26 18 chr13 95719111 95720456 -6152713 - L1MA6 LINE L1 -4 6296 4969 189 323 172 0 chr13 95721011 95721110 -6152059 - MIR SINE MIR -64 144 29 357 238 21 0 chr13 95721356 95721499 -6151670 + (TA)n Simple_repeat Simple_repeat 1 146 0 283 295 57 74 chr13 95721500 95721622 -6151547 - L2 LINE L2 -31 3241 3122 306 0 0 0 chr13 95721679 95721713 -6151456 + (TG)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chr13 95722746 95722771 -6150398 + AT_rich Low_complexity Low_complexity 1 25 0 391 299 95 19 chr13 95723942 95724153 -6149016 - LTR33A LTR ERVL -277 246 20 390 357 76 8 chr13 95724174 95724437 -6148732 - HAL1 LINE L1 -824 1683 1403 255 240 0 0 chr13 95724736 95724786 -6148383 + L2 LINE L2 3217 3266 -6 285 231 154 0 chr13 95725686 95725764 -6147405 - L1ME2 LINE L1 -60 6104 6015 187 267 30 50 chr13 95726029 95726130 -6147039 + MER5B DNA MER1_type 3 101 -77 516 306 46 46 chr13 95726219 95726480 -6146689 - MIR SINE MIR -1 261 1 23 0 0 0 chr13 95727964 95727987 -6145182 + AT_rich Low_complexity Low_complexity 1 23 0 3313 173 30 9 chr13 95728166 95728796 -6144373 - LTR48B LTR ERV1 -1 643 1 1758 137 49 0 chr13 95730396 95730680 -6142489 + AluSx SINE Alu 1 298 -14 346 217 0 0 chr13 95732481 95732579 -6140590 - HsTC2 DNA Tc2 -2 1896 1799 22 56 0 0 chr13 95733610 95733646 -6139523 + AT_rich Low_complexity Low_complexity 1 36 0 338 107 18 0 chr13 95733842 95733898 -6139271 + (TCTG)n Simple_repeat Simple_repeat 3 59 0 23 54 0 0 chr13 95734490 95734527 -6138642 + AT_rich Low_complexity Low_complexity 1 37 0 388 282 92 51 chr13 95736000 95736195 -6136974 - L1MCa LINE L1 -4511 1915 1713 1013 228 155 59 chr13 95736507 95736933 -6136236 - MLT1C LTR MaLR 0 467 1 382 284 41 41 chr13 95739589 95739783 -6133386 + MLT1K LTR MaLR 189 382 -206 231 114 0 0 chr13 95740804 95740839 -6132330 + (T)n Simple_repeat Simple_repeat 1 35 0 1810 177 15 11 chr13 95741147 95741588 -6131581 - MER61D LTR ERV1 0 501 1 1662 175 174 21 chr13 95741779 95742213 -6130956 - LTR10A LTR ERV1 -61 548 1 627 120 0 9 chr13 95742437 95742545 -6130624 - L1MA8 LINE L1 -4 6287 6181 334 270 25 25 chr13 95742549 95742708 -6130461 + L1M4c LINE L1 2053 2211 -4173 228 149 0 0 chr13 95743782 95743829 -6129340 + (CTTG)n Simple_repeat Simple_repeat 2 48 0 240 35 0 0 chr13 95743836 95743865 -6129304 + (T)n Simple_repeat Simple_repeat 1 29 0 1903 255 33 29 chr13 95743901 95744590 -6128579 - L1MC3 LINE L1 -635 7150 6459 180 0 0 0 chr13 95744590 95744610 -6128559 + (A)n Simple_repeat Simple_repeat 1 20 0 262 338 0 0 chr13 95744746 95744826 -6128343 - L3 LINE CR1 -348 1229 1150 327 325 46 7 chr13 95744913 95745064 -6128105 + MIR SINE MIR 84 240 -22 367 267 203 0 chr13 95745396 95745583 -6127586 - L1MC4 LINE L1 -11 8031 7807 224 205 0 0 chr13 95745774 95745813 -6127356 + (ATG)n Simple_repeat Simple_repeat 3 41 0 1967 114 4 11 chr13 95746575 95746856 -6126313 + AluSg SINE Alu 1 279 -31 1152 297 53 37 chr13 95747602 95748057 -6125112 - LTR16B LTR ERVL 0 464 3 274 306 31 0 chr13 95748434 95748532 -6124637 - L1MCc LINE L1 -4327 2795 2695 428 228 0 0 chr13 95748532 95748611 -6124558 + Tigger5 DNA MER2_type 1 79 -2244 2074 265 67 26 chr13 95748715 95749285 -6123884 - L1MCc LINE L1 -4427 2695 2149 192 77 0 0 chr13 95749285 95749311 -6123858 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2074 265 67 26 chr13 95749311 95749862 -6123307 - L1MCc LINE L1 -4973 2149 1317 225 65 0 0 chr13 95749862 95749893 -6123276 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2074 265 67 26 chr13 95749893 95750065 -6123104 - L1MCc LINE L1 -5805 1317 1153 232 279 47 53 chr13 95750166 95750356 -6122813 - L1MCc LINE L1 -5292 1130 942 499 253 30 55 chr13 95750592 95750880 -6122289 - L1MCc LINE L1 -5766 656 30 1925 208 41 91 chr13 95751758 95751804 -6121365 + MLT2B3 LTR ERVL 1 48 -506 2766 102 5 3 chr13 95751804 95752178 -6120991 + THE1C LTR MaLR 1 375 0 1925 208 41 91 chr13 95752178 95752714 -6120455 + MLT2B3 LTR ERVL 48 554 0 242 193 18 18 chr13 95752762 95752819 -6120350 - L3 LINE CR1 -187 1390 1334 189 0 0 0 chr13 95753228 95753249 -6119920 + (CA)n Simple_repeat Simple_repeat 1 21 0 1953 197 81 68 chr13 95753465 95754008 -6119161 + MLT2B3 LTR ERVL 5 554 0 891 140 27 43 chr13 95754059 95754245 -6118924 - L1M4 LINE L1 -652 5526 5344 193 277 21 0 chr13 95755179 95755226 -6117943 + L3 LINE CR1 450 497 -1080 212 375 162 6 chr13 95755454 95755793 -6117376 + L2 LINE L2 2881 3272 0 241 167 0 0 chr13 95756007 95756049 -6117120 - L2 LINE L2 -7 3306 3265 273 271 82 16 chr13 95756189 95756311 -6116858 + LTR16A1 LTR ERVL 261 390 -67 2034 174 107 63 chr13 95756557 95757081 -6116088 + LTR10B LTR ERV1 1 547 0 306 0 0 0 chr13 95757301 95757335 -6115834 + (CA)n Simple_repeat Simple_repeat 2 35 0 3013 116 21 61 chr13 95757441 95757951 -6115218 - MER4E LTR ERV1 0 779 290 1712 195 55 24 chr13 95757951 95758418 -6114751 + LTR22 LTR ERVK 1 458 0 1546 96 10 122 chr13 95758418 95758559 -6114610 - MER4E LTR ERV1 -485 294 202 1883 175 0 0 chr13 95758559 95758862 -6114307 - AluSx SINE Alu -9 303 1 1546 96 10 122 chr13 95758862 95759044 -6114125 - MER4E LTR ERV1 -577 202 1 24 0 0 0 chr13 95759179 95759203 -6113966 + AT_rich Low_complexity Low_complexity 1 24 0 324 263 70 0 chr13 95759778 95759892 -6113277 + MIR SINE MIR 84 205 -57 218 160 20 0 chr13 95760201 95760251 -6112918 + CT-rich Low_complexity Low_complexity 2 52 0 24 32 0 0 chr13 95760650 95760681 -6112488 + AT_rich Low_complexity Low_complexity 1 31 0 6195 145 35 11 chr13 95761575 95763054 -6110115 - L1MA3 LINE L1 -1 7723 6204 3594 116 17 43 chr13 95763046 95763280 -6109889 - L1MA3 LINE L1 -3902 3663 3424 * 1780 159 61 9 chr13 95763280 95763606 -6109563 + MER61A LTR ERV1 1 343 0 3594 116 17 43 chr13 95763606 95764068 -6109101 - L1MA3 LINE L1 -4141 3424 2985 * 12985 169 31 27 chr13 95764062 95766484 -6106685 - L1MA3 LINE L1 -4847 2718 289 24 0 0 0 chr13 95766574 95766598 -6106571 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr13 95766620 95766675 -6106494 + AT_rich Low_complexity Low_complexity 1 55 0 422 250 90 8 chr13 95767414 95767536 -6105633 - L1ME2 LINE L1 -4 6162 6028 * 694 233 57 90 chr13 95767522 95768123 -6105046 - L1ME2 LINE L1 -813 5333 4753 2035 128 0 0 chr13 95768157 95768487 -6104682 - AluSx SINE Alu 0 330 1 349 248 161 22 chr13 95769652 95769789 -6103380 - MIR SINE MIR -18 244 89 1817 210 59 8 chr13 95771015 95771405 -6101764 + MSTB1 LTR MaLR 16 425 -7 226 229 0 0 chr13 95771634 95771682 -6101487 + L2 LINE L2 779 826 -2488 398 259 111 30 chr13 95771778 95771913 -6101256 + MIR SINE MIR 17 162 -100 * 1088 325 170 16 chr13 95771903 95772543 -6100626 + L2 LINE L2 581 1319 -1995 1020 316 22 27 chr13 95772545 95772947 -6100222 + MLT1G1 LTR MaLR 3 402 -193 635 263 199 16 chr13 95773074 95773386 -6099783 + L2 LINE L2 2422 2790 -524 248 236 28 28 chr13 95775834 95775906 -6097263 - L1MEd LINE L1 -4862 1257 1186 202 197 28 14 chr13 95775910 95775981 -6097188 + (TA)n Simple_repeat Simple_repeat 1 72 0 1441 218 92 3 chr13 95776004 95776416 -6096753 - MLT2B1 LTR ERVL -20 495 1 25 0 0 0 chr13 95776568 95776593 -6096576 + AT_rich Low_complexity Low_complexity 1 25 0 1502 220 60 44 chr13 95776659 95777095 -6096074 + MLT1C LTR MaLR 25 467 0 26 0 0 0 chr13 95777283 95777309 -6095860 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr13 95778521 95778552 -6094617 + AT_rich Low_complexity Low_complexity 1 31 0 1972 169 45 38 chr13 95781891 95782318 -6090851 + MSTB1 LTR MaLR 1 430 -2 4222 185 64 44 chr13 95782452 95783597 -6089572 - MER11A LTR ERVK 0 1266 1 531 136 232 16 chr13 95783696 95783821 -6089348 - MER4A LTR ERV1 -18 447 296 1474 131 117 47 chr13 95783856 95784213 -6088956 - MER4A LTR ERV1 -236 354 1 5598 96 18 14 chr13 95784361 95785198 -6087971 + L1PA11 LINE L1 5335 6174 0 256 231 176 56 chr13 95785623 95785839 -6087330 - LTR33A LTR ERVL -46 477 236 737 275 205 27 chr13 95785845 95786293 -6086876 - LTR50 LTR ERVL -242 553 26 3001 180 76 23 chr13 95786295 95786938 -6086231 - LTR8A LTR ERV1 0 727 51 344 313 77 35 chr13 95787200 95787459 -6085710 + MERVL LTR ERVL 5040 5309 -176 300 111 67 11 chr13 95787570 95787660 -6085509 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1777 197 0 0 chr13 95788399 95788698 -6084471 - AluJo SINE Alu -13 299 1 204 135 0 0 chr13 95788959 95788996 -6084173 + (GA)n Simple_repeat Simple_repeat 1 37 0 374 221 0 0 chr13 95789389 95789457 -6083712 - MER3 DNA MER1_type -135 74 7 216 0 0 0 chr13 95789975 95789999 -6083170 + (A)n Simple_repeat Simple_repeat 1 24 0 745 230 73 73 chr13 95790039 95790339 -6082830 + LTR37B LTR ERV1 115 414 -54 326 333 52 16 chr13 95790760 95791012 -6082157 + MER41B LTR ERV1 175 435 -200 744 214 45 25 chr13 95791915 95792116 -6081053 - L1ME LINE L1 -350 5885 5681 1037 273 113 3 chr13 95792117 95792417 -6080752 - MLT1E2 LTR MaLR 0 626 294 358 225 78 0 chr13 95792439 95792568 -6080601 - L1ME LINE L1 -1110 5105 4967 3227 198 15 6 chr13 95792583 95793236 -6079933 + L1MB4 LINE L1 5488 6146 -34 2105 282 103 10 chr13 95793247 95794204 -6078965 - L1ME LINE L1 -5226 1170 125 2020 107 87 35 chr13 95795326 95795672 -6077497 + THE1B LTR MaLR 1 364 0 891 166 6 0 chr13 95795932 95796089 -6077080 - L1MC3 LINE L1 -20 7765 7608 206 242 91 0 chr13 95798021 95798087 -6075082 - MIR SINE MIR -17 245 174 852 236 77 65 chr13 95798091 95798401 -6074768 + LTR68 LTR ERV1 1 314 -426 243 0 0 0 chr13 95798640 95798667 -6074502 + (CA)n Simple_repeat Simple_repeat 2 28 0 506 256 44 0 chr13 95799886 95800023 -6073146 - MER69A DNA AcHobo 0 177 35 300 193 0 80 chr13 95800438 95800526 -6072643 + L1ME4a LINE L1 6036 6116 -5 2212 121 0 0 chr13 95801060 95801373 -6071796 - AluSq SINE Alu 0 313 1 22 0 0 0 chr13 95801761 95801783 -6071386 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr13 95801829 95801870 -6071299 + AT_rich Low_complexity Low_complexity 1 41 0 5106 71 14 4 chr13 95801881 95802582 -6070587 + L1PA8 LINE L1 5452 6159 -13 236 343 7 7 chr13 95802788 95802925 -6070244 + L1ME LINE L1 5344 5480 -682 228 261 23 62 chr13 95803257 95803387 -6069782 + L1ME LINE L1 5733 5857 -264 278 246 14 0 chr13 95803472 95803541 -6069628 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 30 0 0 chr13 95803741 95803774 -6069395 + AT_rich Low_complexity Low_complexity 1 33 0 293 288 32 117 chr13 95803817 95804126 -6069043 - MLT1H LTR MaLR -50 499 217 415 280 133 0 chr13 95804212 95804355 -6068814 + MER5A DNA MER1_type 28 189 0 874 196 5 31 chr13 95804369 95804563 -6068606 - L1P LINE L1 -2215 3931 3743 821 265 112 0 chr13 95804698 95805011 -6068158 - L1MC4 LINE L1 -457 7585 7238 1308 218 113 39 chr13 95805013 95805567 -6067602 - L1MC4 LINE L1 -810 7083 6451 2587 7 0 3 chr13 95805973 95806289 -6066880 + AluYa5 SINE Alu 1 315 0 330 240 116 27 chr13 95806462 95806608 -6066561 - L1ME LINE L1 -368 5753 5595 228 219 0 0 chr13 95806608 95806649 -6066520 + (CA)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr13 95807699 95807730 -6065439 + AT_rich Low_complexity Low_complexity 1 31 0 2288 134 24 16 chr13 95808580 95808952 -6064217 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr13 95809835 95809856 -6063313 + AT_rich Low_complexity Low_complexity 1 21 0 2175 80 10 0 chr13 95810538 95810838 -6062331 - L1PA4 LINE L1 0 6155 5853 955 242 36 40 chr13 95810971 95811223 -6061946 + MER58 DNA MER1_type 3 253 -2167 244 327 112 25 chr13 95812131 95812452 -6060717 - L3 LINE CR1 -110 1467 1119 198 103 0 0 chr13 95814559 95814588 -6058581 + (CAA)n Simple_repeat Simple_repeat 1 29 0 374 317 77 0 chr13 95814589 95814772 -6058397 - MIR SINE MIR -5 257 61 798 237 29 0 chr13 95814867 95815040 -6058129 - MER45A DNA AcHobo 0 178 1 194 253 187 0 chr13 95815047 95815122 -6058047 + MIR3 SINE MIR 118 206 -2 1100 202 174 22 chr13 95816311 95816628 -6056541 - MLT1A1 LTR MaLR 0 365 1 1079 217 201 27 chr13 95816629 95817114 -6056055 + MLT1F1 LTR MaLR 1 567 0 23 33 0 0 chr13 95817217 95817247 -6055922 + AT_rich Low_complexity Low_complexity 1 30 0 202 279 82 21 chr13 95817337 95817434 -6055735 + L2 LINE L2 2799 2900 -372 1399 190 90 26 chr13 95817453 95817764 -6055405 - MER44D DNA MER2_type -8 601 1 1941 165 15 45 chr13 95818167 95818566 -6054603 + MLT1B LTR MaLR 1 387 -3 2173 106 3 3 chr13 95818953 95819246 -6053923 + AluSg SINE Alu 1 293 -17 1917 168 3 3 chr13 95819469 95819766 -6053403 + AluSx SINE Alu 1 297 -15 1050 213 40 49 chr13 95820941 95821339 -6051830 + MLT1C LTR MaLR 3 459 -8 1272 234 46 24 chr13 95821559 95821888 -6051281 + LTR40b LTR ERVL 127 462 0 281 312 147 0 chr13 95823615 95823724 -6049445 - L2 LINE L2 0 3313 3189 461 281 58 0 chr13 95823859 95823998 -6049171 - MLT1H LTR MaLR -14 535 389 235 235 280 45 chr13 95824027 95824227 -6048942 - MLT1H LTR MaLR -249 300 54 2205 103 140 13 chr13 95824393 95824772 -6048397 + MSTA LTR MaLR 2 428 0 416 319 25 0 chr13 95825765 95825925 -6047244 + MIR SINE MIR 68 231 -31 206 255 0 0 chr13 95826533 95826584 -6046585 - L2 LINE L2 -1 3312 3262 22 0 0 0 chr13 95826997 95827019 -6046150 + AT_rich Low_complexity Low_complexity 1 22 0 1763 164 14 3 chr13 95827030 95827322 -6045847 + AluJb SINE Alu 1 295 -17 2742 140 23 49 chr13 95827450 95828021 -6045148 + L1MA4 LINE L1 5745 6300 0 1129 219 233 26 chr13 95828021 95828524 -6044645 - L1MA5 LINE L1 -27 6273 5667 522 233 27 59 chr13 95828339 95828558 -6044611 - L1PA5 LINE L1 -299 5855 5644 * 429 307 154 38 chr13 95828663 95828772 -6044397 - L1 LINE L1 -1856 4290 4195 213 39 0 0 chr13 95828772 95828798 -6044371 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 429 307 154 38 chr13 95828798 95829187 -6043982 - L1 LINE L1 -1951 4195 3734 1642 179 0 7 chr13 95829452 95829776 -6043393 - AluSx SINE Alu 0 326 5 324 302 65 65 chr13 95829844 95830089 -6043080 - L1 LINE L1 -2931 3215 2971 814 265 129 73 chr13 95830214 95830772 -6042397 + L1ME4a LINE L1 5533 6121 0 1542 119 23 15 chr13 95831052 95831313 -6041856 - L1PA6 LINE L1 -4 6150 5888 22 56 0 0 chr13 95831490 95831526 -6041643 + AT_rich Low_complexity Low_complexity 1 36 0 389 308 99 24 chr13 95831526 95831952 -6041217 - L1ME LINE L1 -407 5714 5257 614 163 41 61 chr13 95832101 95832248 -6040921 + MLT1F LTR MaLR 399 542 0 2166 129 73 9 chr13 95832368 95832710 -6040459 + THE1B LTR MaLR 1 364 0 435 186 12 12 chr13 95832924 95833010 -6040159 + MER74B LTR ERVL 58 143 -479 425 129 0 0 chr13 95833010 95833080 -6040089 - MSTB-int LTR MaLR -195 1456 1387 * 1017 163 6 0 chr13 95833078 95833256 -6039913 - MSTB-int LTR MaLR -1472 179 1 1772 200 109 3 chr13 95833256 95833641 -6039528 - MSTB LTR MaLR 0 426 1 23 0 0 0 chr13 95833687 95833710 -6039459 + AT_rich Low_complexity Low_complexity 1 23 0 1522 153 63 71 chr13 95835326 95835704 -6037465 + THE1C LTR MaLR 1 375 0 9517 115 81 9 chr13 95835705 95837179 -6035990 + THE1C-int LTR MaLR 2 1580 0 1583 149 72 72 chr13 95837179 95837554 -6035615 + THE1C LTR MaLR 1 375 0 1102 235 13 8 chr13 95838359 95838597 -6034572 - MER8 DNA MER2_type 0 239 1 219 164 36 18 chr13 95838699 95838754 -6034415 + (TA)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr13 95839543 95839565 -6033604 + AT_rich Low_complexity Low_complexity 1 22 0 2061 122 3 0 chr13 95840160 95840448 -6032721 + AluSg SINE Alu 12 300 -10 1108 112 0 0 chr13 95840449 95840601 -6032568 + AluSg/x SINE Alu 131 282 -28 233 83 0 0 chr13 95840630 95840666 -6032503 + LTR49 LTR ERV1 498 533 -62 2205 114 0 16 chr13 95840666 95840974 -6032195 + AluSq SINE Alu 1 303 -10 272 125 0 18 chr13 95842027 95842083 -6031086 + (TTTTC)n Simple_repeat Simple_repeat 1 55 0 293 182 45 0 chr13 95842090 95842156 -6031013 - AluJ/FRAM SINE Alu -3 299 231 2654 263 46 28 chr13 95843118 95843307 -6029862 + L1MEc LINE L1 34 218 -6178 2511 111 14 11 chr13 95843307 95843677 -6029492 - THE1C LTR MaLR 0 375 5 2654 263 46 28 chr13 95843677 95844359 -6028810 + L1MEc LINE L1 218 921 -5475 22 0 0 0 chr13 95844702 95844724 -6028445 + AT_rich Low_complexity Low_complexity 1 22 0 237 81 27 0 chr13 95845990 95846027 -6027142 + MADE1 DNA Mariner 9 46 -34 324 96 19 0 chr13 95846043 95846095 -6027074 - MADE1 DNA Mariner -26 54 2 1884 65 3 147 chr13 95846131 95846508 -6026661 + AluY SINE Alu 1 311 0 695 248 24 52 chr13 95848593 95848775 -6024394 + L1PA15-16 LINE L1 2825 2999 -3850 1348 227 37 48 chr13 95848775 95849150 -6024019 + MLT1A2 LTR MaLR 4 374 0 695 248 24 52 chr13 95849150 95849291 -6023878 + L1PA15-16 LINE L1 2999 3142 -3707 8359 188 135 67 chr13 95849296 95851090 -6022079 + L1MA2 LINE L1 15 1684 -5881 540 129 30 20 chr13 95851090 95851191 -6021978 + L1PB1 LINE L1 6048 6149 -2 8359 188 135 67 chr13 95851191 95851717 -6021452 + L1MA2 LINE L1 1684 2172 -5393 2162 121 0 0 chr13 95851717 95852006 -6021163 + AluSq SINE Alu 1 289 -24 186 43 0 0 chr13 95852009 95852032 -6021137 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 8359 188 135 67 chr13 95852032 95852554 -6020615 + L1MA2 LINE L1 2173 2658 -4907 2230 103 7 20 chr13 95852554 95852856 -6020313 + AluSx SINE Alu 3 300 -12 8359 188 135 67 chr13 95852856 95853115 -6020054 + L1MA2 LINE L1 2658 3512 -4053 7661 169 16 13 chr13 95853110 95854696 -6018473 + L1MA2 LINE L1 5261 6851 -743 * 379 143 0 0 chr13 95854697 95854760 -6018409 + Alu SINE Alu 235 297 -5 5470 108 22 5 chr13 95854764 95855616 -6017553 + L1MA2 LINE L1 6856 7722 -1 622 232 76 14 chr13 95855688 95855899 -6017270 + L1M1 LINE L1 3896 4119 -3446 1624 142 86 47 chr13 95855905 95856264 -6016905 + THE1C LTR MaLR 3 375 0 353 191 0 0 chr13 95856264 95856327 -6016842 + THE1C-int LTR MaLR 1 63 -1517 220 148 66 0 chr13 95856328 95856389 -6016780 + (TA)n Simple_repeat Simple_repeat 2 66 0 309 185 0 0 chr13 95857323 95857388 -6015781 + CT-rich Low_complexity Low_complexity 3 67 0 182 170 302 0 chr13 95858143 95858196 -6014973 + MIR SINE MIR 79 147 -115 314 200 0 0 chr13 95858197 95858262 -6014907 + MADE1 DNA Mariner 16 80 0 546 258 13 25 chr13 95858802 95858972 -6014197 - MIR SINE MIR -37 225 60 1904 141 10 3 chr13 95860274 95860565 -6012604 - AluSx SINE Alu -19 293 1 239 300 69 88 chr13 95861061 95861221 -6011948 - L3 LINE CR1 -1091 486 330 21 57 0 0 chr13 95861815 95861850 -6011319 + AT_rich Low_complexity Low_complexity 1 35 0 879 211 14 38 chr13 95862512 95862721 -6010448 - MLT1A2 LTR MaLR 0 374 171 260 337 158 23 chr13 95862732 95863168 -6010001 - L2 LINE L2 -1298 2016 1522 2548 208 12 9 chr13 95863178 95863754 -6009415 + L1PB4 LINE L1 5576 6153 -3 6370 26 9 0 chr13 95863835 95864604 -6008565 - L1P LINE L1 -1509 4637 3862 281 361 118 0 chr13 95864743 95864862 -6008307 + L2 LINE L2 3140 3272 0 21 0 0 0 chr13 95864906 95864927 -6008242 + AT_rich Low_complexity Low_complexity 1 21 0 557 257 141 16 chr13 95865912 95866161 -6007008 - L1MC4 LINE L1 -146 7896 7617 1149 251 138 33 chr13 95866167 95866618 -6006551 + MLT1D LTR MaLR 8 505 0 646 253 35 0 chr13 95866632 95866806 -6006363 + MLT1D-int LTR MaLR 46 225 -1146 183 214 169 22 chr13 95867298 95867387 -6005782 + MIR3 SINE MIR 81 182 -26 2341 86 3 0 chr13 95867393 95867695 -6005474 - AluY SINE Alu -8 303 1 1903 221 67 49 chr13 95868081 95868969 -6004200 + L1MB8 LINE L1 1572 2513 -4444 470 295 45 85 chr13 95869046 95869422 -6003747 + L1MB8 LINE L1 2457 2817 -4321 1130 199 46 35 chr13 95869447 95869708 -6003461 + AluJo SINE Alu 1 264 -48 790 235 28 56 chr13 95869749 95870151 -6003018 + L1MB8 LINE L1 2777 3167 -3790 976 234 98 41 chr13 95870175 95870542 -6002627 + MLT1D LTR MaLR 118 505 0 2580 245 46 19 chr13 95870542 95871506 -6001663 + L1MB8 LINE L1 3158 4147 -2810 2224 199 60 45 chr13 95871519 95872057 -6001112 - MER44D DNA MER2_type -1 704 159 865 168 90 26 chr13 95872057 95872212 -6000957 + FRAM SINE Alu 1 161 -15 944 207 0 6 chr13 95872217 95872381 -6000788 - MER44D DNA MER2_type -542 163 1 1786 233 12 8 chr13 95872395 95872889 -6000280 + L1MB8 LINE L1 4181 4676 -2281 774 189 92 61 chr13 95872889 95873085 -6000084 - MLT1A2 LTR MaLR 0 374 173 264 100 0 0 chr13 95873086 95873126 -6000043 + (GA)n Simple_repeat Simple_repeat 1 40 0 468 179 0 0 chr13 95873135 95873230 -5999939 - MLT1A2 LTR MaLR -215 175 81 216 0 0 0 chr13 95873232 95873256 -5999913 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1331 241 28 12 chr13 95873256 95873655 -5999514 + L1MB8 LINE L1 4765 5169 -1788 1233 226 93 75 chr13 95873668 95873895 -5999274 + MLT1C LTR MaLR 7 228 -239 186 103 0 0 chr13 95873895 95873924 -5999245 + (CA)n Simple_repeat Simple_repeat 1 29 0 1233 226 93 75 chr13 95873924 95874139 -5999030 + MLT1C LTR MaLR 228 457 -10 3872 204 43 18 chr13 95874158 95875733 -5997436 + L1MB8 LINE L1 5369 6984 -5 5297 129 15 1 chr13 95876118 95876917 -5996252 - L1PA15 LINE L1 -4 6161 5352 * 8088 212 20 16 chr13 95876910 95878828 -5994341 - L1PA15 LINE L1 -1098 5048 3122 9351 28 2 1 chr13 95878829 95880724 -5992445 - L1PA4 LINE L1 -3 6152 4258 6433 37 1 1 chr13 95880724 95881501 -5991668 + L1PA3 LINE L1 5375 6151 -4 21 71 0 0 chr13 95882735 95882777 -5990392 + AT_rich Low_complexity Low_complexity 1 42 0 256 234 21 0 chr13 95883018 95883065 -5990104 + MIR SINE MIR 23 70 -192 404 163 12 0 chr13 95884670 95884756 -5988413 + CT-rich Low_complexity Low_complexity 5 91 0 327 230 87 41 chr13 95885264 95885457 -5987712 - MLT1J1 LTR MaLR -250 261 50 268 234 60 162 chr13 95886502 95886669 -5986500 - MER5A DNA MER1_type -39 150 1 444 219 206 14 chr13 95886693 95886839 -5986330 - MER5A DNA MER1_type 0 189 16 393 324 181 0 chr13 95887254 95887464 -5985705 + MIR SINE MIR 15 262 0 261 329 65 35 chr13 95887658 95887889 -5985280 + L2 LINE L2 2619 2856 -458 316 299 31 16 chr13 95887988 95888115 -5985054 + L2 LINE L2 3173 3301 -12 18330 177 10 11 chr13 95888121 95893666 -5979503 + L1PA14 LINE L1 4 5911 -1688 2162 138 0 16 chr13 95893666 95893977 -5979192 + AluSg SINE Alu 1 306 -4 18330 177 10 11 chr13 95893977 95895655 -5977514 + L1PA14 LINE L1 5911 7590 -9 30 27 0 0 chr13 95895665 95895702 -5977467 + AT_rich Low_complexity Low_complexity 1 37 0 2294 110 0 0 chr13 95896876 95897224 -5975945 + AluSx SINE Alu 1 348 0 420 267 167 0 chr13 95897774 95897924 -5975245 - MER5A DNA MER1_type -6 183 9 914 256 173 28 chr13 95898145 95898457 -5974712 - MLT1H1 LTR MaLR 0 555 161 4386 87 50 38 chr13 95898457 95899137 -5974032 + LTR12 LTR ERV1 1 688 0 914 256 173 28 chr13 95899137 95899257 -5973912 - MLT1H1 LTR MaLR -394 161 60 24 0 0 0 chr13 95899574 95899598 -5973571 + AT_rich Low_complexity Low_complexity 1 24 0 2056 92 42 7 chr13 95899647 95899931 -5973238 + AluSc SINE Alu 3 296 -13 28 29 0 0 chr13 95899974 95900009 -5973160 + AT_rich Low_complexity Low_complexity 1 35 0 216 241 0 0 chr13 95900039 95900097 -5973072 + (TA)n Simple_repeat Simple_repeat 1 58 0 1260 170 45 78 chr13 95900939 95901321 -5971848 + MLT1B LTR MaLR 3 371 -19 2575 190 18 39 chr13 95901414 95901449 -5971720 - L1MC3 LINE L1 0 7785 7751 2335 73 7 3 chr13 95901449 95901750 -5971419 - AluSc SINE Alu -7 302 1 2575 190 18 39 chr13 95901750 95902325 -5970844 - L1MC3 LINE L1 -34 7751 7188 2345 108 0 6 chr13 95902338 95902652 -5970517 - AluSx SINE Alu 0 312 1 238 250 113 12 chr13 95902676 95902756 -5970413 + MIR SINE MIR 94 181 -81 542 195 60 7 chr13 95902771 95902920 -5970249 - L1M4 LINE L1 -6385 157 1 231 263 12 0 chr13 95902929 95903009 -5970160 + MER69 DNA AcHobo 2430 2510 -16 441 288 4 93 chr13 95903024 95903260 -5969909 - MIR SINE MIR -33 229 15 300 321 187 11 chr13 95905051 95905238 -5967931 - L1ME4a LINE L1 -238 5883 5664 30 69 0 0 chr13 95906218 95906276 -5966893 + AT_rich Low_complexity Low_complexity 1 58 0 622 285 60 64 chr13 95906724 95906814 -5966355 - L1MC4a LINE L1 -1911 5897 5808 1816 181 36 3 chr13 95906814 95907150 -5966019 - MER7A DNA MER2_type 0 346 2 622 285 60 64 chr13 95907150 95907606 -5965563 - L1MC4a LINE L1 -2000 5808 5353 347 286 82 55 chr13 95907965 95908185 -5964984 - L1MC4a LINE L1 -1177 4969 4744 618 325 20 16 chr13 95909201 95909447 -5963722 + MIR SINE MIR 13 259 -3 2427 64 3 0 chr13 95909874 95910170 -5962999 - AluY SINE Alu -14 297 1 1863 144 77 15 chr13 95911776 95912115 -5961054 - THE1B LTR MaLR -4 360 1 306 349 176 12 chr13 95912329 95912670 -5960499 + HAL1 LINE L1 973 1369 -1138 372 323 136 23 chr13 95913976 95914286 -5958883 - L3 LINE CR1 -11 1566 1222 1801 158 22 0 chr13 95914506 95914823 -5958346 - MER4D LTR ERV1 0 903 580 4471 202 92 105 chr13 95914823 95916600 -5956569 + MER52A LTR ERV1 2 1755 0 2935 158 37 14 chr13 95916601 95917171 -5955998 - MER4D LTR ERV1 -320 583 1 29 84 0 0 chr13 95917519 95917590 -5955579 + AT_rich Low_complexity Low_complexity 1 71 0 650 201 58 0 chr13 95918105 95918244 -5954925 - MER20 DNA MER1_type -5 214 68 515 291 117 0 chr13 95918570 95918749 -5954420 + MIR SINE MIR 4 203 -59 257 330 84 26 chr13 95919124 95919315 -5953854 - MLT1-int LTR MaLR -474 897 696 2653 88 16 21 chr13 95919315 95919692 -5953477 - THE1C LTR MaLR 0 375 1 827 265 76 16 chr13 95919897 95920349 -5952820 - MLT1-int LTR MaLR -769 602 3 384 243 157 7 chr13 95920512 95920652 -5952517 + MLT1G LTR MaLR 429 589 -1 1270 194 4 24 chr13 95922697 95922945 -5950224 + AluJo SINE Alu 42 284 -28 217 176 0 0 chr13 95923028 95923062 -5950107 - MIR3 SINE MIR -17 191 158 22 0 0 0 chr13 95924253 95924275 -5948894 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr13 95924503 95924527 -5948642 + AT_rich Low_complexity Low_complexity 1 24 0 377 236 132 0 chr13 95924572 95924678 -5948491 - L1ME LINE L1 -540 5624 5505 358 310 49 14 chr13 95925222 95925364 -5947805 + L2 LINE L2 3167 3313 0 527 207 30 7 chr13 95925408 95925543 -5947626 + L1MA10 LINE L1 6179 6316 -18 348 333 91 6 chr13 95925938 95926103 -5947066 - MIR SINE MIR -79 183 5 184 281 16 47 chr13 95926168 95926232 -5946937 + L2 LINE L2 3137 3198 -74 980 144 7 0 chr13 95926684 95926837 -5946332 + AluSg/x SINE Alu 154 307 -3 2186 86 0 54 chr13 95927153 95927298 -5945871 + AluY SINE Alu 1 121 -190 2422 26 46 20 chr13 95927298 95927601 -5945568 + AluY SINE Alu 1 311 0 2186 86 0 54 chr13 95927601 95927770 -5945399 + AluY SINE Alu 121 298 -13 23 0 0 0 chr13 95927858 95927881 -5945288 + AT_rich Low_complexity Low_complexity 1 23 0 252 86 0 0 chr13 95932584 95932619 -5940550 + (A)n Simple_repeat Simple_repeat 1 35 0 427 314 15 7 chr13 95934082 95934219 -5938950 + MIR SINE MIR 15 152 -110 194 274 50 57 chr13 95934913 95935080 -5938089 + MIR SINE MIR 61 226 -36 327 296 123 31 chr13 95935940 95936102 -5937067 + L1MDa LINE L1 2349 2525 -4015 248 362 29 9 chr13 95936803 95936908 -5936261 - L2 LINE L2 -6 3266 3160 2143 98 3 16 chr13 95937759 95937895 -5935274 + AluSq SINE Alu 1 137 -176 2272 76 3 16 chr13 95937895 95938209 -5934960 + AluSp SINE Alu 1 310 -3 2143 98 3 16 chr13 95938209 95938378 -5934791 + AluSq SINE Alu 137 302 -11 637 233 20 7 chr13 95938488 95938634 -5934535 + MER69 DNA AcHobo 1 148 -1078 457 190 0 0 chr13 95938627 95938706 -5934463 + MER69 DNA AcHobo 2448 2526 0 * 300 303 73 0 chr13 95940275 95940384 -5932785 - L2 LINE L2 -8 3264 3148 235 342 53 9 chr13 95940736 95940850 -5932319 - MIR3 SINE MIR -48 160 42 1994 134 3 7 chr13 95942503 95942801 -5930368 - AluSx SINE Alu -15 297 1 1506 168 149 114 chr13 95943187 95943877 -5929292 - Charlie1a DNA MER1_type -2 1453 740 2241 198 106 34 chr13 95943924 95944455 -5928714 - Charlie1a DNA MER1_type -886 569 1 288 293 103 26 chr13 95944456 95944572 -5928597 - L3 LINE CR1 -8 1569 1445 220 293 160 27 chr13 95945861 95946049 -5927120 - L2 LINE L2 -937 2377 2165 214 398 12 0 chr13 95947996 95948079 -5925090 - L2 LINE L2 -36 3277 3194 198 71 0 0 chr13 95949250 95949278 -5923891 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 378 255 179 7 chr13 95955776 95955921 -5917248 - MIR SINE MIR -61 201 32 2494 46 16 0 chr13 95957340 95957645 -5915524 - AluY SINE Alu 0 311 2 1386 214 76 6 chr13 95957899 95958240 -5914929 + MLT1A1 LTR MaLR 1 365 0 12879 23 2 0 chr13 95958317 95960603 -5912566 - L1PA3 LINE L1 -5 6150 3862 281 361 118 0 chr13 95960742 95960861 -5912308 + L2 LINE L2 3140 3272 0 21 0 0 0 chr13 95960905 95960926 -5912243 + AT_rich Low_complexity Low_complexity 1 21 0 557 257 141 16 chr13 95961911 95962160 -5911009 - L1MC4 LINE L1 -146 7896 7617 1149 251 138 33 chr13 95962166 95962617 -5910552 + MLT1D LTR MaLR 8 505 0 626 259 35 0 chr13 95962631 95962805 -5910364 + MLT1D-int LTR MaLR 46 225 -1146 183 214 169 22 chr13 95963297 95963386 -5909783 + MIR3 SINE MIR 81 182 -26 2341 86 3 0 chr13 95963392 95963694 -5909475 - AluY SINE Alu -8 303 1 1903 221 67 49 chr13 95964080 95964968 -5908201 + L1MB8 LINE L1 1572 2513 -4444 456 298 45 85 chr13 95965045 95965421 -5907748 + L1MB8 LINE L1 2457 2817 -4321 1130 199 46 35 chr13 95965446 95965707 -5907462 + AluJo SINE Alu 1 264 -48 790 235 28 56 chr13 95965748 95966150 -5907019 + L1MB8 LINE L1 2777 3167 -3790 976 234 98 41 chr13 95966174 95966541 -5906628 + MLT1D LTR MaLR 118 505 0 2572 245 46 19 chr13 95966541 95967505 -5905664 + L1MB8 LINE L1 3158 4147 -2810 2224 199 60 45 chr13 95967518 95968056 -5905113 - MER44D DNA MER2_type -1 704 159 848 174 90 26 chr13 95968056 95968211 -5904958 + FRAM SINE Alu 1 161 -15 944 207 0 6 chr13 95968216 95968380 -5904789 - MER44D DNA MER2_type -542 163 1 1786 233 12 8 chr13 95968394 95968888 -5904281 + L1MB8 LINE L1 4181 4676 -2281 774 189 92 61 chr13 95968888 95969084 -5904085 - MLT1A2 LTR MaLR 0 374 173 264 100 0 0 chr13 95969085 95969125 -5904044 + (GA)n Simple_repeat Simple_repeat 1 40 0 441 200 0 0 chr13 95969134 95969229 -5903940 - MLT1A2 LTR MaLR -215 175 81 1376 236 27 12 chr13 95969252 95969654 -5903515 + L1MB8 LINE L1 4762 5169 -1788 1233 226 93 75 chr13 95969667 95969894 -5903275 + MLT1C LTR MaLR 7 228 -239 186 103 0 0 chr13 95969894 95969923 -5903246 + (CA)n Simple_repeat Simple_repeat 1 29 0 1233 226 93 75 chr13 95969923 95970138 -5903031 + MLT1C LTR MaLR 228 457 -10 3880 204 43 18 chr13 95970157 95971732 -5901437 + L1MB8 LINE L1 5369 6984 -5 5297 129 15 1 chr13 95972117 95972916 -5900253 - L1PA15 LINE L1 -4 6161 5352 * 8076 213 20 16 chr13 95972909 95974827 -5898342 - L1PA15 LINE L1 -1098 5048 3122 9351 28 2 1 chr13 95974828 95976723 -5896446 - L1PA4 LINE L1 -3 6152 4258 6591 32 0 0 chr13 95976723 95977500 -5895669 + L1PA3 LINE L1 5375 6151 -4 270 0 0 0 chr13 95978544 95978574 -5894595 + (CA)n Simple_repeat Simple_repeat 2 31 0 1077 187 4 0 chr13 95978865 95979143 -5894026 + (TA)n Simple_repeat Simple_repeat 1 280 0 367 316 94 27 chr13 95979201 95979530 -5893639 - L1M4 LINE L1 -3008 3138 2788 232 211 39 0 chr13 95979681 95979733 -5893436 - MLT1H LTR MaLR -171 384 331 363 201 119 52 chr13 95979824 95979946 -5893223 - MLT1H LTR MaLR -390 159 53 403 333 42 13 chr13 95980309 95980546 -5892623 + L1M4 LINE L1 2676 2919 -3227 437 287 126 48 chr13 95981218 95981632 -5891537 - L1M4 LINE L1 -2779 3367 2921 202 191 0 0 chr13 95981682 95981714 -5891455 + CT-rich Low_complexity Low_complexity 3 37 -7 2335 57 13 10 chr13 95981714 95982012 -5891157 - AluY SINE Alu -12 299 1 238 261 43 14 chr13 95982580 95982649 -5890520 - L2 LINE L2 -50 3263 3193 22 0 0 0 chr13 95982710 95982732 -5890437 + AT_rich Low_complexity Low_complexity 1 22 0 2356 42 46 0 chr13 95983641 95983924 -5889245 - AluY SINE Alu -13 298 3 238 262 152 43 chr13 95984144 95984308 -5888861 - MLT1L LTR MaLR -8 607 426 1926 189 52 12 chr13 95984792 95985215 -5887954 - L1MA4 LINE L1 -3 6297 5858 3902 147 56 37 chr13 95985215 95985999 -5887170 + L1MA6 LINE L1 5498 6296 -4 32 0 0 0 chr13 95985989 95986021 -5887148 + AT_rich Low_complexity Low_complexity 1 32 0 227 56 74 0 chr13 95986097 95986151 -5887018 + (TA)n Simple_repeat Simple_repeat 1 58 0 24 32 0 0 chr13 95986439 95986470 -5886699 + AT_rich Low_complexity Low_complexity 1 31 0 225 204 0 0 chr13 95988086 95988130 -5885039 - L1P5 LINE L1 -702 5449 5406 4230 93 2 3 chr13 95988130 95988723 -5884446 + L1PB1 LINE L1 5555 6146 -5 308 323 77 7 chr13 95988766 95988921 -5884248 - MIR SINE MIR -69 193 28 204 277 28 119 chr13 95989529 95989706 -5883463 - L3b LINE CR1 -197 1386 1226 279 54 0 0 chr13 95991306 95991343 -5881826 + (CA)n Simple_repeat Simple_repeat 2 38 0 184 317 0 89 chr13 95991606 95991707 -5881462 - MIR SINE MIR -10 252 161 411 21 0 0 chr13 95991800 95991848 -5881321 + (CA)n Simple_repeat Simple_repeat 1 48 0 249 320 111 30 chr13 95992202 95992564 -5880605 - L1ME LINE L1 -380 5741 5351 3818 150 29 6 chr13 95993535 95994194 -5878975 + Tigger2 DNA MER2_type 1 674 -2044 2369 143 37 26 chr13 95994195 95994623 -5878546 + Tigger2a DNA MER2_type 2 434 0 210 180 33 33 chr13 95994631 95994692 -5878477 + (CATATA)n Simple_repeat Simple_repeat 1 61 0 306 252 44 44 chr13 95994692 95994827 -5878342 - L1MC4 LINE L1 -1337 6705 6571 28 86 0 0 chr13 95995821 95995891 -5877278 + AT_rich Low_complexity Low_complexity 1 70 0 825 239 43 0 chr13 95996016 95996250 -5876919 - L1MD3 LINE L1 -21 7974 7731 363 307 73 0 chr13 95997444 95997581 -5875588 - MIR SINE MIR -6 256 110 3836 93 28 0 chr13 95997842 95998381 -5874788 - MER41A LTR ERV1 0 554 1 392 316 99 48 chr13 95999599 96000013 -5873156 - L1ME LINE L1 -1099 5047 4613 336 282 16 11 chr13 96000091 96000279 -5872890 - L1ME LINE L1 -1613 4533 4345 4040 218 64 18 chr13 96000721 96002429 -5870740 - L1MB5 LINE L1 -8 6166 4538 1319 208 119 24 chr13 96002429 96002766 -5870403 - MLT1A2 LTR MaLR -4 370 2 4040 218 64 18 chr13 96002766 96002926 -5870243 - L1MB5 LINE L1 -1636 4538 4387 2144 132 3 0 chr13 96002926 96003222 -5869947 - AluSq SINE Alu -16 297 1 4040 218 64 18 chr13 96003222 96003366 -5869803 - L1MB5 LINE L1 -1787 4387 4065 27 87 0 0 chr13 96003970 96004039 -5869130 + AT_rich Low_complexity Low_complexity 1 69 0 365 356 0 0 chr13 96004256 96004371 -5868798 - L2 LINE L2 0 3313 3199 891 129 7 14 chr13 96005081 96005228 -5867941 + L1MA8 LINE L1 5538 5683 -608 555 193 0 0 chr13 96005228 96005316 -5867853 - 5S rRNA rRNA -31 90 3 3186 147 32 12 chr13 96005316 96005914 -5867255 + L1MA8 LINE L1 5676 6285 -6 207 100 0 0 chr13 96007103 96007133 -5866036 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 453 274 226 0 chr13 96007944 96008130 -5865039 - MIR SINE MIR 0 262 35 21 57 0 0 chr13 96008947 96008982 -5864187 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 96009340 96009384 -5863785 + AT_rich Low_complexity Low_complexity 1 44 0 333 346 23 31 chr13 96009679 96009809 -5863360 + L2 LINE L2 3167 3295 -18 372 284 81 78 chr13 96010183 96010655 -5862514 - L1ME4a LINE L1 -2 6119 5647 270 0 0 0 chr13 96011003 96011033 -5862136 + (A)n Simple_repeat Simple_repeat 1 30 0 26 74 0 0 chr13 96012225 96012279 -5860890 + AT_rich Low_complexity Low_complexity 1 54 0 2152 128 39 28 chr13 96013001 96013361 -5859808 - THE1B LTR MaLR 0 364 1 410 286 87 11 chr13 96013489 96013665 -5859504 - L1MC4a LINE L1 0 7808 6080 320 249 91 119 chr13 96013670 96014977 -5858192 + L1 LINE L1 2716 3986 -2160 217 282 29 26 chr13 96015072 96015256 -5857913 - L2 LINE L2 -3 3310 3073 319 293 62 114 chr13 96015270 96015543 -5857626 - MIR SINE MIR 0 262 4 2069 131 47 36 chr13 96015598 96015958 -5857211 + THE1B LTR MaLR 1 364 0 1009 282 74 13 chr13 96015969 96016348 -5856821 - L2 LINE L2 -338 2976 2575 1777 201 48 30 chr13 96016560 96016997 -5856172 + MLT1C LTR MaLR 23 467 0 758 295 214 19 chr13 96016997 96017478 -5855691 - L2 LINE L2 -735 2579 2005 2632 113 3 0 chr13 96017627 96017999 -5855170 + THE1C LTR MaLR 3 375 0 436 274 222 13 chr13 96018032 96018262 -5854907 - L2 LINE L2 -722 2592 2315 234 265 96 12 chr13 96018376 96018459 -5854710 + MLT1I LTR MaLR 33 122 -287 526 259 26 116 chr13 96018489 96018721 -5854448 + MLT1I LTR MaLR 198 408 -1 708 205 41 41 chr13 96019107 96019225 -5853944 + MER45A DNA AcHobo 5 125 -1456 2229 143 31 14 chr13 96019225 96019582 -5853587 + THE1B LTR MaLR 1 363 -1 708 205 41 41 chr13 96019582 96019634 -5853535 + MER45A DNA AcHobo 124 175 -3 214 231 123 15 chr13 96019755 96019820 -5853349 + MIR SINE MIR 175 246 -16 21 0 0 0 chr13 96021718 96021739 -5851430 + AT_rich Low_complexity Low_complexity 1 21 0 4472 130 12 30 chr13 96021888 96022284 -5850885 - L1PA15 LINE L1 0 6165 5787 2102 129 0 3 chr13 96022284 96022593 -5850576 - AluSg SINE Alu -2 308 1 4472 130 12 30 chr13 96022593 96022933 -5850236 - L1PA15 LINE L1 -378 5787 5442 791 162 0 14 chr13 96022933 96023075 -5850094 - LTR2B LTR ERV1 0 490 351 1046 93 25 0 chr13 96023075 96023236 -5849933 - L1P4 LINE L1 -664 5497 5333 * 3059 232 29 24 chr13 96023235 96024120 -5849049 - L1P LINE L1 -3340 2806 1917 2153 161 48 22 chr13 96024271 96024312 -5848857 - MSTA LTR MaLR 0 428 390 2365 80 0 3 chr13 96024312 96024611 -5848558 + AluY SINE Alu 1 298 -13 2153 161 48 22 chr13 96024611 96024986 -5848183 - MSTA LTR MaLR -38 390 1 346 216 21 0 chr13 96025449 96025546 -5847623 - L1MB8 LINE L1 -2 6176 6078 266 164 0 33 chr13 96025624 96025685 -5847484 + GA-rich Low_complexity Low_complexity 2 60 0 1459 242 75 4 chr13 96025751 96026202 -5846967 - L1MD3 LINE L1 -12 7983 7501 25 0 0 0 chr13 96027103 96027128 -5846041 + AT_rich Low_complexity Low_complexity 1 25 0 5118 178 30 23 chr13 96027131 96028258 -5844911 - L1MC2 LINE L1 -7 6337 5204 577 293 34 39 chr13 96028272 96028460 -5844709 - MIR SINE MIR -66 142 6 342 0 0 0 chr13 96029777 96029815 -5843354 + (CA)n Simple_repeat Simple_repeat 2 39 0 23 54 0 0 chr13 96030243 96030280 -5842889 + AT_rich Low_complexity Low_complexity 1 37 0 1081 206 83 68 chr13 96031121 96031200 -5841969 - MLT1B LTR MaLR 0 390 314 2194 132 3 0 chr13 96031200 96031510 -5841659 - AluSx SINE Alu -1 311 1 1081 206 83 68 chr13 96031510 96031814 -5841355 - MLT1B LTR MaLR -76 314 1 14735 160 59 16 chr13 96032067 96033431 -5839738 + L1PB1 LINE L1 1 1305 -5562 2326 76 6 29 chr13 96033431 96033747 -5839422 + AluY SINE Alu 1 309 -2 14735 160 59 16 chr13 96033747 96038950 -5834219 + L1PB1 LINE L1 1305 6866 -1 221 268 28 0 chr13 96039138 96039209 -5833960 + L3 LINE CR1 1229 1301 -276 367 261 110 10 chr13 96041589 96041732 -5831437 + MIR SINE MIR 37 192 -62 372 328 22 0 chr13 96041799 96041933 -5831236 + L2 LINE L2 3136 3272 0 301 292 26 91 chr13 96042637 96042791 -5830378 + L1ME LINE L1 26 169 -5901 672 143 75 34 chr13 96042811 96042958 -5830211 + L1PB4 LINE L1 5995 6147 -9 653 255 65 0 chr13 96043064 96043264 -5829905 + L1ME LINE L1 315 527 -5543 2813 194 46 19 chr13 96044320 96045011 -5828158 + MER67C LTR ERV1 1 710 0 393 290 78 99 chr13 96047708 96048184 -5824985 + MLT1J LTR MaLR 3 468 -43 198 0 0 0 chr13 96048187 96048209 -5824960 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1983 122 0 0 chr13 96048216 96048486 -5824683 - AluSx SINE Alu -42 270 1 1375 204 176 8 chr13 96048499 96048897 -5824272 + MLT1C LTR MaLR 3 467 0 526 297 85 9 chr13 96049548 96049760 -5823409 + MIR SINE MIR 27 254 -8 535 40 0 26 chr13 96050286 96050362 -5822807 - L1PA6 LINE L1 -1 6153 6080 1752 207 62 21 chr13 96051240 96051379 -5821790 - L1MC3 LINE L1 0 7785 7653 2353 48 0 0 chr13 96051379 96051668 -5821501 - L1PA6 LINE L1 -2 6152 5864 1752 207 62 21 chr13 96051668 96052044 -5821125 - L1MC3 LINE L1 -132 7653 7249 300 172 17 0 chr13 96052046 96052104 -5821065 - MLT1F1 LTR MaLR -459 108 50 816 205 98 13 chr13 96052112 96052381 -5820788 - L1MC3 LINE L1 -672 7118 6859 279 0 0 0 chr13 96052406 96052437 -5820732 + (TC)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr13 96052436 96052466 -5820703 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 415 307 122 28 chr13 96053282 96053536 -5819633 + L1M4 LINE L1 4554 4831 -1315 2207 93 14 7 chr13 96053634 96053925 -5819244 - AluSx SINE Alu -18 294 2 301 333 17 17 chr13 96055216 96055333 -5817836 - MIR SINE MIR -115 147 31 2322 119 0 0 chr13 96055470 96055806 -5817363 - AluSx SINE Alu 0 336 1 204 293 110 12 chr13 96055914 96055996 -5817173 + MIR SINE MIR 43 132 -130 319 326 179 0 chr13 96056604 96056822 -5816347 + L3b LINE CR1 1200 1456 -127 192 77 0 0 chr13 96057792 96057818 -5815351 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 1192 309 143 17 chr13 96058436 96059427 -5813742 - L2 LINE L2 -12 3301 2188 59 46 0 0 chr13 96059743 96059830 -5813339 + AT_rich Low_complexity Low_complexity 1 87 0 5200 128 21 3 chr13 96059844 96060716 -5812453 - HSMAR2 DNA Mariner -415 887 1 31 44 0 0 chr13 96061233 96061278 -5811891 + AT_rich Low_complexity Low_complexity 1 45 0 187 298 32 75 chr13 96063903 96063997 -5809172 + MIR SINE MIR 102 191 -71 511 244 17 61 chr13 96064053 96064233 -5808936 + MER5B DNA MER1_type 5 176 -2 493 257 86 11 chr13 96066303 96066490 -5806679 + MIR SINE MIR 18 218 -44 236 320 29 19 chr13 96066857 96066960 -5806209 - L1ME3A LINE L1 -13 6157 6054 859 189 143 7 chr13 96067030 96067316 -5805853 + Charlie5 DNA MER1_type 2244 2568 -44 325 294 28 9 chr13 96067403 96067512 -5805657 - L1ME3A LINE L1 -327 5835 5725 294 203 0 14 chr13 96067856 96067930 -5805239 - MLT-int LTR MaLR -1662 73 1 313 348 72 29 chr13 96068508 96068715 -5804454 - HAL1 LINE L1 -1553 954 739 2336 164 21 16 chr13 96069080 96069512 -5803657 + Tigger2a DNA MER2_type 1 434 0 560 322 24 14 chr13 96070191 96070402 -5802767 - MIR SINE MIR -21 241 29 3222 206 3 11 chr13 96071186 96071927 -5801242 - L1 LINE L1 -1683 4463 3729 1980 161 88 2 chr13 96071927 96072324 -5800845 + L1PA16 LINE L1 5735 6165 -1 733 277 50 11 chr13 96072539 96072821 -5800348 - L1ME1 LINE L1 -29 6137 5845 25 51 0 0 chr13 96072932 96072971 -5800198 + AT_rich Low_complexity Low_complexity 1 39 0 426 207 52 17 chr13 96073373 96073547 -5799622 + (TA)n Simple_repeat Simple_repeat 1 180 0 1547 157 0 90 chr13 96073557 96073780 -5799389 + MER7A DNA MER2_type 1 242 -2796 207 0 0 0 chr13 96073780 96073803 -5799366 + (TG)n Simple_repeat Simple_repeat 1 23 0 1547 157 0 90 chr13 96073803 96073814 -5799355 + MER7A DNA MER2_type 242 252 -2786 1705 117 4 33 chr13 96073814 96074088 -5799081 - AluSx SINE Alu -46 266 1 1547 157 0 90 chr13 96074088 96074209 -5798960 + MER7A DNA MER2_type 252 323 -23 309 291 96 101 chr13 96074937 96075384 -5797785 - L1M2 LINE L1 -5842 1007 563 265 393 7 21 chr13 96077563 96077708 -5795461 - MIR3 SINE MIR -3 205 63 182 206 0 88 chr13 96078151 96078219 -5794950 - MIR SINE MIR -43 219 158 21 0 0 0 chr13 96078556 96078577 -5794592 + AT_rich Low_complexity Low_complexity 1 21 0 231 217 72 14 chr13 96078717 96078786 -5794383 + MER5A DNA MER1_type 61 133 -56 2369 76 20 0 chr13 96079571 96079873 -5793296 - AluSg SINE Alu 0 310 3 327 344 32 8 chr13 96080795 96080920 -5792249 - MIR SINE MIR -58 150 23 423 294 62 21 chr13 96081000 96081194 -5791975 + MER58C DNA MER1_type 14 215 0 2186 101 0 0 chr13 96081302 96081588 -5791581 + AluY SINE Alu 24 309 -2 321 345 49 14 chr13 96082887 96083029 -5790140 + L3 LINE CR1 34 180 -1397 21 36 0 0 chr13 96083076 96083104 -5790065 + AT_rich Low_complexity Low_complexity 1 28 0 212 287 23 46 chr13 96083230 96083317 -5789852 + MIR3 SINE MIR 123 207 -1 6166 199 23 19 chr13 96083345 96083457 -5789712 - L1MB2 LINE L1 0 6407 6297 261 0 0 0 chr13 96083457 96083486 -5789683 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2106 114 0 17 chr13 96083486 96083775 -5789394 - AluSx SINE Alu -28 284 1 6166 199 23 19 chr13 96083775 96083872 -5789297 - L1MB2 LINE L1 -110 6297 6202 2295 103 0 6 chr13 96083872 96084183 -5788986 - AluSc SINE Alu 0 309 1 6166 199 23 19 chr13 96084183 96084677 -5788492 - L1MB2 LINE L1 -205 6202 5711 180 77 0 0 chr13 96084677 96084703 -5788466 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 6166 199 23 19 chr13 96084703 96085909 -5787260 - L1MB2 LINE L1 -696 5711 4481 210 71 0 0 chr13 96085909 96085937 -5787232 + (TG)n Simple_repeat Simple_repeat 1 28 0 6166 199 23 19 chr13 96085937 96086406 -5786763 - L1MB2 LINE L1 -1926 4481 4015 251 239 0 0 chr13 96086427 96086473 -5786696 + Tigger5 DNA MER2_type 143 188 -2135 * 344 181 111 0 chr13 96086472 96086544 -5786625 + Tigger5 DNA MER2_type 2244 2323 0 2368 251 37 56 chr13 96086544 96087729 -5785440 - L1MB2 LINE L1 -4520 1793 777 279 308 28 76 chr13 96087810 96088021 -5785148 - L1M3de LINE L1 -5192 1461 1261 315 329 35 26 chr13 96088027 96088255 -5784914 - L1M3de LINE L1 -5907 756 527 1090 62 0 0 chr13 96089014 96089159 -5784010 + L1PA4 LINE L1 6011 6155 0 2351 77 0 10 chr13 96089451 96089763 -5783406 - AluY SINE Alu 0 311 3 28 0 0 0 chr13 96089770 96089798 -5783371 + AT_rich Low_complexity Low_complexity 1 28 0 41213 30 21 1 chr13 96089821 96095844 -5777325 - L1HS LINE L1 0 6155 8 1436 216 6 47 chr13 96096233 96096269 -5776900 - AluJo SINE Alu -5 307 271 234 0 0 0 chr13 96096269 96096295 -5776874 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1436 216 6 47 chr13 96096295 96096578 -5776591 - AluJo SINE Alu -41 271 1 484 324 22 0 chr13 96096707 96096889 -5776280 + L3 LINE CR1 743 928 -649 1425 204 56 9 chr13 96097094 96097433 -5775736 - MLT1A1 LTR MaLR -10 355 1 228 279 12 23 chr13 96098720 96098806 -5774363 + CT-rich Low_complexity Low_complexity 4 88 0 309 26 0 0 chr13 96098975 96099013 -5774156 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 301 78 59 chr13 96099497 96099650 -5773519 + MIR SINE MIR 81 236 -26 231 151 21 54 chr13 96100330 96100423 -5772746 + CT-rich Low_complexity Low_complexity 3 92 0 1596 165 82 120 chr13 96101805 96102104 -5771065 - MLT1C LTR MaLR 0 467 191 282 87 0 0 chr13 96102104 96102150 -5771019 + (TG)n Simple_repeat Simple_repeat 2 47 0 1596 165 82 120 chr13 96102150 96102335 -5770834 - MLT1C LTR MaLR -276 191 1 355 272 110 0 chr13 96102991 96103127 -5770042 - L3 LINE CR1 -2 1575 1425 2353 151 0 46 chr13 96103165 96103366 -5769803 + MSTA LTR MaLR 1 173 -255 1912 116 10 33 chr13 96103366 96103693 -5769476 + AluSx SINE Alu 1 312 0 2353 151 0 46 chr13 96103693 96103928 -5769241 + MSTA LTR MaLR 173 417 -11 350 317 56 21 chr13 96105284 96105426 -5767743 + L2 LINE L2 3143 3289 -24 986 317 157 47 chr13 96105798 96106674 -5766495 - L2 LINE L2 -345 2969 2191 2152 109 3 0 chr13 96106674 96107001 -5766168 + AluSx SINE Alu 1 328 0 986 317 157 47 chr13 96107001 96107261 -5765908 - L2 LINE L2 -1123 2191 1961 1710 182 14 3 chr13 96107261 96107552 -5765617 + AluJo SINE Alu 1 294 -18 986 317 157 47 chr13 96107552 96107856 -5765313 - L2 LINE L2 -1353 1961 1368 570 273 112 46 chr13 96108193 96108453 -5764716 + MER77 LTR ERV1 238 514 -91 790 154 6 28 chr13 96109519 96109701 -5763468 + CT-rich Low_complexity Low_complexity 1 178 0 686 192 17 6 chr13 96109716 96109893 -5763276 + CT-rich Low_complexity Low_complexity 2 180 0 183 42 0 0 chr13 96110024 96110048 -5763121 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 245 321 166 11 chr13 96110049 96110236 -5762933 - MLT1J LTR MaLR -40 471 256 288 222 0 0 chr13 96110579 96110651 -5762518 + (TG)n Simple_repeat Simple_repeat 1 72 0 402 315 8 23 chr13 96111043 96111173 -5761996 + MIR SINE MIR 25 152 -110 21 0 0 0 chr13 96111380 96111401 -5761768 + AT_rich Low_complexity Low_complexity 1 21 0 4440 153 18 54 chr13 96111559 96112715 -5760454 - L1PB4 LINE L1 0 6156 5039 276 295 33 95 chr13 96112955 96113165 -5760004 - L2 LINE L2 -1359 1955 1759 202 307 120 0 chr13 96113313 96113388 -5759781 + L2 LINE L2 3229 3312 -1 355 244 44 0 chr13 96115845 96116005 -5757164 + (TA)n Simple_repeat Simple_repeat 1 167 0 1990 99 10 8 chr13 96116252 96116566 -5756603 + L1P4 LINE L1 5343 5656 -509 662 257 29 30 chr13 96116722 96116852 -5756317 - L1ME3 LINE L1 -295 5867 5738 372 22 0 0 chr13 96116852 96116897 -5756272 + (TG)n Simple_repeat Simple_repeat 2 46 0 662 257 29 30 chr13 96116897 96116932 -5756237 - L1ME3 LINE L1 -424 5738 5704 1931 123 73 25 chr13 96116932 96117289 -5755880 + THE1C LTR MaLR 2 375 0 662 257 29 30 chr13 96117289 96117444 -5755725 - L1ME3 LINE L1 -458 5704 5542 310 175 25 133 chr13 96117856 96117976 -5755193 - L1ME3 LINE L1 -709 5533 5427 18783 163 23 35 chr13 96118006 96122432 -5750737 - L1MA3 LINE L1 -2 7722 3245 2379 120 0 0 chr13 96122432 96122741 -5750428 - AluSg SINE Alu -1 309 1 18783 163 23 35 chr13 96122741 96124958 -5748211 - L1MA3 LINE L1 -4479 3245 1191 2150 120 0 3 chr13 96124958 96125277 -5747892 + AluSx SINE Alu 1 318 0 18783 163 23 35 chr13 96125277 96126439 -5746730 - L1MA3 LINE L1 -6533 1191 17 1205 252 51 15 chr13 96126458 96127189 -5745980 - L1ME3 LINE L1 -763 5421 4614 5490 111 15 2 chr13 96127510 96129097 -5744072 - L1PA13 LINE L1 0 6163 4533 5867 181 5 11 chr13 96129097 96130318 -5742851 + L1PA13 LINE L1 3289 4502 -1644 2169 124 0 19 chr13 96130410 96130725 -5742444 - AluSx SINE Alu -3 309 1 2500 57 0 25 chr13 96131142 96131458 -5741711 - AluY SINE Alu -3 308 1 782 213 8 92 chr13 96132090 96132329 -5740840 - MER20 DNA MER1_type 0 219 1 306 0 0 0 chr13 96133578 96133612 -5739557 + (TATG)n Simple_repeat Simple_repeat 2 35 0 293 100 0 0 chr13 96133615 96133655 -5739514 - AluSp/q SINE Alu -20 283 244 214 374 55 0 chr13 96134700 96134791 -5738378 + MIR SINE MIR 54 149 -59 242 327 103 18 chr13 96135470 96135693 -5737476 + MIR SINE MIR 10 251 -11 427 252 32 24 chr13 96136305 96136428 -5736741 + MER5B DNA MER1_type 54 177 -1 380 242 255 7 chr13 96136430 96136579 -5736590 + MER5A DNA MER1_type 4 189 0 347 172 16 0 chr13 96137163 96137227 -5735942 - MER67D LTR ERV1 -4 510 446 1290 189 8 35 chr13 96137269 96137529 -5735640 + AluJo SINE Alu 42 294 -18 233 170 0 38 chr13 96137529 96137582 -5735587 - MER67D LTR ERV1 -79 435 385 517 105 0 35 chr13 96137590 96137676 -5735493 - AluSg/x SINE Alu -13 296 214 769 187 90 11 chr13 96137677 96137921 -5735248 - MER67D LTR ERV1 -132 382 139 193 343 29 39 chr13 96138674 96138878 -5734291 + L2 LINE L2 2452 2653 -661 468 168 23 69 chr13 96138928 96139002 -5734167 + L1MD1 LINE L1 6118 6185 -57 2456 61 15 12 chr13 96139002 96139332 -5733837 - L1PA7 LINE L1 0 6154 5824 468 168 23 69 chr13 96139332 96139388 -5733781 + L1MD1 LINE L1 6185 6242 0 2589 52 0 0 chr13 96140467 96140773 -5732396 + AluY SINE Alu 4 309 -2 284 0 28 0 chr13 96141909 96141945 -5731224 + (CA)n Simple_repeat Simple_repeat 2 38 0 213 243 47 0 chr13 96142269 96142339 -5730830 + MIR SINE MIR 84 156 -52 267 31 0 0 chr13 96142468 96142500 -5730669 + (CA)n Simple_repeat Simple_repeat 2 33 0 4140 189 31 18 chr13 96144596 96145577 -5727592 + L1MB7 LINE L1 5167 6164 -20 351 277 57 13 chr13 96146176 96146329 -5726840 - MER5A DNA MER1_type -22 156 1 943 304 86 40 chr13 96146533 96147528 -5725641 + HAL1 LINE L1 631 1671 -836 489 128 39 32 chr13 96147910 96148066 -5725103 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 393 118 49 10 chr13 96148111 96148213 -5724956 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 570 307 89 39 chr13 96149986 96150400 -5722769 - L2 LINE L2 -1505 1809 1375 292 283 33 22 chr13 96150591 96150683 -5722486 - L2 LINE L2 -6 3266 3174 300 291 76 47 chr13 96150695 96150867 -5722302 + L2 LINE L2 1735 1911 -1403 2044 231 61 39 chr13 96150914 96151252 -5721917 + MLT1E LTR MaLR 10 368 -225 440 96 96 0 chr13 96151252 96151325 -5721844 + MADE1 DNA Mariner 1 80 0 2044 231 61 39 chr13 96151325 96151557 -5721612 + MLT1E LTR MaLR 368 593 0 202 358 57 49 chr13 96151928 96152174 -5720995 + L2 LINE L2 2437 2684 -630 237 349 71 24 chr13 96152948 96153074 -5720095 + L2 LINE L2 3099 3230 -42 498 67 13 0 chr13 96153527 96153602 -5719567 - L1PA6 LINE L1 0 6154 6079 1415 173 19 0 chr13 96154394 96154660 -5718509 + L1MB7 LINE L1 5898 6168 -16 318 167 184 18 chr13 96155365 96155446 -5717723 + AluJb SINE Alu 44 124 -178 24 67 0 0 chr13 96156051 96156096 -5717073 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr13 96156492 96156520 -5716649 + AT_rich Low_complexity Low_complexity 1 28 0 3085 155 0 52 chr13 96156907 96157463 -5715706 - MER1A DNA MER1_type 0 527 1 432 301 49 0 chr13 96157629 96157752 -5715417 + L2 LINE L2 3183 3311 -2 226 155 17 35 chr13 96158976 96159034 -5714135 + HAL1b LINE L1 597 653 -695 6876 65 9 12 chr13 96159428 96160345 -5712824 - L1PA8 LINE L1 0 6172 5259 1557 168 4 15 chr13 96160527 96160801 -5712368 + AluJo SINE Alu 37 307 -5 1750 164 0 0 chr13 96161605 96161909 -5711260 - L1P LINE L1 -1153 4993 4690 2386 118 14 6 chr13 96161909 96162273 -5710896 + L1PA10 LINE L1 5789 6155 -13 2066 144 2 73 chr13 96162322 96162732 -5710437 - L1PA15 LINE L1 -8 6157 5777 268 215 65 0 chr13 96162782 96162875 -5710294 + L1ME3 LINE L1 3876 3974 -2172 627 243 49 32 chr13 96163442 96163689 -5709480 + L1ME3 LINE L1 5653 5903 -259 236 287 115 11 chr13 96163861 96163948 -5709221 - L2 LINE L2 0 3272 3177 898 279 66 7 chr13 96164158 96164597 -5708572 - L2 LINE L2 -72 3241 2772 371 273 224 12 chr13 96164863 96165028 -5708141 - MER63A DNA MER1_type -3 207 8 2094 114 7 29 chr13 96165102 96165408 -5707761 - AluSx SINE Alu -13 299 1 284 320 72 26 chr13 96166388 96166541 -5706628 + MER5B DNA MER1_type 3 162 -16 2393 65 27 0 chr13 96166744 96167037 -5706132 + AluY SINE Alu 1 301 -10 315 277 61 20 chr13 96167465 96167613 -5705556 - L1MEd LINE L1 -5954 165 12 335 322 57 31 chr13 96167616 96168073 -5705096 - L1M4 LINE L1 -1496 4650 4182 2045 107 4 0 chr13 96168813 96169118 -5704051 + AluSq SINE Alu 1 306 0 396 0 0 0 chr13 96169133 96169177 -5703992 + (CA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr13 96169180 96169201 -5703968 + (TAAAAA)n Simple_repeat Simple_repeat 3 23 0 24 0 0 0 chr13 96169214 96169238 -5703931 + AT_rich Low_complexity Low_complexity 1 24 0 347 297 62 51 chr13 96169251 96169621 -5703548 - L1M4 LINE L1 -2699 3447 3074 2019 154 0 50 chr13 96169954 96170173 -5702996 - MLT1A1 LTR MaLR -2 363 168 2086 127 7 0 chr13 96170173 96170478 -5702691 - AluSx SINE Alu 0 307 1 2019 154 0 50 chr13 96170478 96170639 -5702530 - MLT1A1 LTR MaLR -197 168 1 410 144 10 106 chr13 96171516 96171620 -5701549 + L1MC4 LINE L1 6893 6986 -1056 697 260 121 31 chr13 96171663 96171986 -5701183 + L1MC4 LINE L1 7690 8041 -1 2190 152 16 30 chr13 96173887 96174316 -5698853 + L1PA13 LINE L1 5734 6156 -7 45 87 0 0 chr13 96174657 96174772 -5698397 + AT_rich Low_complexity Low_complexity 1 115 0 2479 62 7 0 chr13 96175197 96175506 -5697663 + AluY SINE Alu 1 311 0 204 40 0 0 chr13 96175567 96175592 -5697577 + (T)n Simple_repeat Simple_repeat 1 25 0 2391 92 3 0 chr13 96175618 96175924 -5697245 + AluSp SINE Alu 1 307 -6 821 107 36 12 chr13 96176302 96176470 -5696699 + CT-rich Low_complexity Low_complexity 3 174 0 425 322 94 49 chr13 96177621 96177888 -5695281 + L2 LINE L2 2994 3272 0 318 353 87 5 chr13 96177965 96178149 -5695020 - L2 LINE L2 -833 2481 2283 25 31 0 0 chr13 96178379 96178411 -5694758 + AT_rich Low_complexity Low_complexity 1 32 0 2006 138 20 0 chr13 96178710 96179006 -5694163 + AluSp SINE Alu 11 312 -1 285 189 38 0 chr13 96181027 96181080 -5692089 - Tigger3(Golem) DNA MER2_type -41 2988 2934 1895 193 14 11 chr13 96181363 96181726 -5691443 - MLT1A1 LTR MaLR 0 365 2 2456 62 3 0 chr13 96181784 96182124 -5691045 + AluY SINE Alu 1 341 0 217 350 0 40 chr13 96182287 96182387 -5690782 - MIR SINE MIR -3 259 164 1672 175 43 46 chr13 96183053 96183402 -5689767 - MER7A DNA MER2_type 0 346 1 306 311 163 38 chr13 96183878 96184087 -5689082 + MIR SINE MIR 20 254 -8 3307 34 56 0 chr13 96184604 96185018 -5688151 + L1PA4 LINE L1 5719 6155 0 483 196 57 38 chr13 96185686 96185844 -5687325 - MER103 DNA DNA 0 166 6 209 216 20 0 chr13 96185954 96186005 -5687164 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 1430 168 0 4 chr13 96186067 96186311 -5686858 - Tigger5 DNA MER2_type 0 2323 2081 423 203 13 0 chr13 96186308 96186387 -5686782 - Tigger5 DNA MER2_type -2231 92 13 * 302 207 59 18 chr13 96187252 96187421 -5685748 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 396 261 117 39 chr13 96187898 96188128 -5685041 - L1MC4a LINE L1 -1921 5887 5640 225 156 312 13 chr13 96188207 96188284 -5684885 - L1MC4a LINE L1 -2354 5454 5355 517 319 110 45 chr13 96188291 96189005 -5684164 - L1 LINE L1 -753 5393 4613 317 282 16 11 chr13 96189083 96189271 -5683898 - L1 LINE L1 -1613 4533 4345 4040 218 64 18 chr13 96189713 96191421 -5681748 - L1MB5 LINE L1 -8 6402 4774 1319 208 119 24 chr13 96191421 96191758 -5681411 - MLT1A2 LTR MaLR -4 370 2 4040 218 64 18 chr13 96191758 96191918 -5681251 - L1MB5 LINE L1 -1636 4774 4623 2144 132 3 0 chr13 96191918 96192214 -5680955 - AluSq SINE Alu -16 297 1 4040 218 64 18 chr13 96192214 96192358 -5680811 - L1MB5 LINE L1 -1787 4623 4301 3282 248 55 79 chr13 96192351 96192913 -5680256 - L1MB5 LINE L1 -2393 3989 3415 * 1863 126 19 58 chr13 96192913 96193223 -5679946 - AluSx SINE Alu -12 300 3 3282 248 55 79 chr13 96193223 96195383 -5677786 - L1MB5 LINE L1 -2967 3415 1184 2265 184 19 19 chr13 96195385 96195862 -5677307 - L1MC1 LINE L1 -11 6820 6344 831 168 43 6 chr13 96195862 96196020 -5677149 + L1MC1 LINE L1 6156 6322 -11 740 265 25 4 chr13 96196021 96196266 -5676903 + L1M4c LINE L1 1188 1437 -4947 805 225 135 48 chr13 96196266 96196430 -5676739 - L1MC1 LINE L1 -1398 5246 5098 1874 113 19 0 chr13 96196430 96196696 -5676473 + AluSg SINE Alu 3 273 -37 338 0 24 0 chr13 96196702 96196744 -5676425 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 805 225 135 48 chr13 96196744 96196950 -5676219 - L1MC1 LINE L1 -1550 5094 4836 487 247 11 86 chr13 96197020 96197287 -5675882 - L1MC1 LINE L1 -5425 1117 871 27 87 0 0 chr13 96197717 96197786 -5675383 + AT_rich Low_complexity Low_complexity 1 69 0 365 356 0 0 chr13 96198003 96198118 -5675051 - L2 LINE L2 0 3313 3199 891 129 7 14 chr13 96198828 96198975 -5674194 + L1MA8 LINE L1 5538 5683 -608 555 193 0 0 chr13 96198975 96199063 -5674106 - 5S rRNA rRNA -31 90 3 3186 147 32 12 chr13 96199063 96199661 -5673508 + L1MA8 LINE L1 5676 6285 -6 216 158 0 0 chr13 96200843 96200881 -5672288 + T-rich Low_complexity Low_complexity 1 38 0 453 274 226 0 chr13 96201692 96201878 -5671291 - MIR SINE MIR 0 262 35 21 57 0 0 chr13 96202695 96202730 -5670439 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr13 96203088 96203132 -5670037 + AT_rich Low_complexity Low_complexity 1 44 0 333 346 23 31 chr13 96203427 96203557 -5669612 + L2 LINE L2 3167 3295 -18 372 284 81 78 chr13 96203931 96204403 -5668766 - L1ME4a LINE L1 -2 6119 5647 279 0 0 0 chr13 96204750 96204781 -5668388 + (A)n Simple_repeat Simple_repeat 1 31 0 26 74 0 0 chr13 96205972 96206026 -5667143 + AT_rich Low_complexity Low_complexity 1 54 0 4161 171 88 6 chr13 96206639 96207539 -5665630 - L1MD1 LINE L1 -50 6192 5225 1475 237 44 25 chr13 96207557 96208033 -5665136 - L1MD1 LINE L1 -1794 4352 3868 194 265 24 48 chr13 96209089 96209172 -5663997 - MIR3 SINE MIR -47 161 81 183 156 0 0 chr13 96210100 96210132 -5663037 + CT-rich Low_complexity Low_complexity 1 32 0 2252 99 7 0 chr13 96210132 96210425 -5662744 - AluSc SINE Alu -14 295 1 26 0 0 0 chr13 96210906 96210932 -5662237 + AT_rich Low_complexity Low_complexity 1 26 0 862 230 36 73 chr13 96211899 96212245 -5660924 + MER77 LTR ERV1 355 771 -6 1755 194 15 44 chr13 96212589 96212997 -5660172 - MSTD LTR MaLR 0 396 1 1712 145 47 4 chr13 96213555 96213831 -5659338 + AluJo SINE Alu 25 312 0 2416 86 0 0 chr13 96213834 96214135 -5659034 + AluSq SINE Alu 1 301 -12 252 157 0 0 chr13 96214135 96214186 -5658983 + L1M4c LINE L1 1534 1584 -5524 * 337 156 78 0 chr13 96214155 96214219 -5658950 + L1M4c LINE L1 1953 2021 -5009 1403 171 15 90 chr13 96214220 96214553 -5658616 + AluJb SINE Alu 3 310 -2 422 280 8 0 chr13 96264560 96264692 -5608477 + MLT1A2 LTR MaLR 242 374 0 2008 156 24 14 chr13 96266309 96266680 -5606489 - THE1C LTR MaLR 0 375 1 243 279 116 0 chr13 96267200 96267286 -5605883 + L2 LINE L2 3137 3232 -40 244 261 0 0 chr13 96267302 96267367 -5605802 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 2281 133 11 16 chr13 96267801 96268178 -5604991 + THE1C LTR MaLR 1 375 0 8771 136 49 15 chr13 96268178 96269706 -5603463 + THE1C-int LTR MaLR 1 1580 0 483 123 12 0 chr13 96269891 96269972 -5603197 + THE1C LTR MaLR 294 375 0 236 154 19 0 chr13 96270871 96270923 -5602246 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1989 132 7 4 chr13 96270966 96271247 -5601922 - AluSx SINE Alu -20 292 11 21 36 0 0 chr13 96271293 96271321 -5601848 + AT_rich Low_complexity Low_complexity 1 28 0 335 264 74 8 chr13 96271689 96271810 -5601359 + L2 LINE L2 3185 3313 0 30 0 0 0 chr13 96271973 96272003 -5601166 + AT_rich Low_complexity Low_complexity 1 30 0 239 300 33 42 chr13 96272440 96272560 -5600609 + MIR SINE MIR 108 226 -36 485 45 0 0 chr13 96273998 96274065 -5599104 - AluY SINE Alu -2 308 242 257 312 167 7 chr13 96274537 96274675 -5598494 - L2 LINE L2 -18 3295 3136 23 33 0 0 chr13 96275184 96275214 -5597955 + AT_rich Low_complexity Low_complexity 1 30 0 4709 227 54 21 chr13 96275511 96277821 -5595348 + L1MB7 LINE L1 3603 5986 -198 183 351 90 24 chr13 96278894 96279105 -5594064 + L2 LINE L2 2670 2894 -420 535 214 60 33 chr13 96279186 96279368 -5593801 - MER5A DNA MER1_type 0 189 3 181 293 101 20 chr13 96279570 96279669 -5593500 + L2 LINE L2 3189 3295 -18 361 292 97 15 chr13 96280115 96280310 -5592859 + L2 LINE L2 2474 2684 -630 503 259 86 56 chr13 96280971 96281203 -5591966 - L1ME3 LINE L1 -14 6148 5910 650 269 74 5 chr13 96282127 96282343 -5590826 + MIR SINE MIR 28 258 -4 189 318 30 0 chr13 96283361 96283427 -5589742 + L2 LINE L2 3197 3264 -49 3242 147 27 86 chr13 96283453 96284200 -5588969 + MER44D DNA MER2_type 3 705 0 278 310 21 28 chr13 96284733 96284875 -5588294 + GA-rich Low_complexity Low_complexity 1 141 0 378 0 0 0 chr13 96286918 96286960 -5586209 + (TG)n Simple_repeat Simple_repeat 2 43 0 2052 141 13 3 chr13 96288659 96288965 -5584204 + AluSx SINE Alu 1 309 -3 666 101 57 0 chr13 96288965 96289123 -5584046 + (TA)n Simple_repeat Simple_repeat 1 167 0 181 304 22 54 chr13 96290301 96290393 -5582776 + L2 LINE L2 3225 3313 0 337 292 97 13 chr13 96290559 96290713 -5582456 - MIR SINE MIR -56 206 40 2335 105 0 0 chr13 96293930 96294234 -5578935 + AluSq SINE Alu 1 304 -9 2038 164 57 31 chr13 96295313 96295831 -5577338 - MLT2A2 LTR ERVL 0 554 1 195 309 85 85 chr13 96295879 96296267 -5576902 + L2 LINE L2 852 1239 -2075 383 291 227 45 chr13 96296421 96297050 -5576119 + L2 LINE L2 1524 2267 -1047 2299 91 10 0 chr13 96297640 96297936 -5575233 - AluSx SINE Alu -13 299 1 365 347 72 11 chr13 96298214 96298479 -5574690 - L1M4 LINE L1 -1258 4888 4608 2234 99 31 0 chr13 96298483 96298506 -5574663 - AluSc SINE Alu -7 302 281 351 0 0 0 chr13 96298506 96298545 -5574624 + (TG)n Simple_repeat Simple_repeat 2 40 0 2234 99 31 0 chr13 96298545 96298814 -5574355 - AluSc SINE Alu -28 281 1 389 266 71 0 chr13 96298974 96299158 -5574011 + Tigger8 DNA MER2_type 200 396 -270 1906 136 0 0 chr13 96299840 96300105 -5573064 + AluSp SINE Alu 1 265 -48 225 0 0 0 chr13 96300116 96300141 -5573028 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 738 311 43 40 chr13 96300144 96300491 -5572678 - L2 LINE L2 -62 3251 2904 329 362 119 4 chr13 96301330 96301565 -5571604 - L2 LINE L2 -558 2756 2495 190 277 31 15 chr13 96301729 96301794 -5571375 + L2 LINE L2 2317 2382 -932 261 350 154 34 chr13 96301810 96302362 -5570807 - L2 LINE L2 -501 2813 2196 211 252 69 96 chr13 96304219 96304383 -5568786 + MIR SINE MIR 32 187 -62 1999 98 90 0 chr13 96304688 96304965 -5568204 - AluSx SINE Alu -10 302 1 1948 249 32 7 chr13 96305249 96305812 -5567357 - L1ME1 LINE L1 -5 6161 5585 750 224 7 70 chr13 96305818 96306090 -5567079 - L1ME1 LINE L1 -287 5879 5625 576 42 0 0 chr13 96306591 96306662 -5566507 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 258 266 0 0 chr13 96310118 96310182 -5562987 + (TGAA)n Simple_repeat Simple_repeat 1 64 0 270 368 9 0 chr13 96310182 96310288 -5562881 - L2 LINE L2 -25 3288 3182 42 36 0 0 chr13 96310803 96310859 -5562310 + AT_rich Low_complexity Low_complexity 1 56 0 287 263 32 0 chr13 96310966 96311061 -5562108 - MLT1K LTR MaLR 0 588 491 267 140 0 0 chr13 96311152 96311202 -5561967 + (TC)n Simple_repeat Simple_repeat 1 50 0 1529 57 0 0 chr13 96311289 96311482 -5561687 + L1PA4 LINE L1 5958 6150 -5 36 62 0 0 chr13 96312340 96312404 -5560765 + AT_rich Low_complexity Low_complexity 1 64 0 321 320 238 0 chr13 96313177 96313358 -5559811 - MIR SINE MIR -31 231 8 291 191 0 0 chr13 96314370 96314433 -5558736 + (TG)n Simple_repeat Simple_repeat 2 64 0 4194 190 27 6 chr13 96314637 96315744 -5557425 - L1MB2 LINE L1 -11 6876 5751 318 216 0 0 chr13 96316006 96316080 -5557089 + (TA)n Simple_repeat Simple_repeat 2 75 0 513 255 117 68 chr13 96316087 96316456 -5556713 - LTR16A1 LTR ERVL -5 452 103 2216 117 20 8 chr13 96316456 96316807 -5556362 + THE1A LTR MaLR 1 355 0 11502 103 10 1 chr13 96316807 96318373 -5554796 + THE1A-int LTR MaLR 1 1580 0 2321 116 11 6 chr13 96318373 96318726 -5554443 + THE1A LTR MaLR 1 355 0 513 255 117 68 chr13 96318726 96318782 -5554387 - LTR16A1 LTR ERVL -353 104 4 315 286 0 8 chr13 96319451 96319584 -5553585 - L1MB2 LINE L1 -1246 5616 5485 320 316 85 48 chr13 96319898 96320170 -5552999 - L1MB2 LINE L1 -1800 5062 4781 272 314 52 33 chr13 96320220 96320586 -5552583 - L1MB2 LINE L1 -2373 4489 4117 265 288 82 37 chr13 96320656 96320689 -5552480 - L1MB2 LINE L1 -3016 3846 3816 297 0 0 0 chr13 96320689 96320722 -5552447 + (TG)n Simple_repeat Simple_repeat 2 34 0 265 288 82 37 chr13 96320722 96321153 -5552016 - L1MB2 LINE L1 -3046 3816 3361 488 161 11 43 chr13 96321453 96321639 -5551530 + (TA)n Simple_repeat Simple_repeat 1 180 0 203 311 68 23 chr13 96321714 96321846 -5551323 + L2 LINE L2 2593 2730 -584 278 273 15 0 chr13 96322050 96322116 -5551053 - L2 LINE L2 -49 3264 3198 1041 170 0 0 chr13 96322218 96322377 -5550792 + FRAM SINE Alu 1 159 -7 9728 189 121 6 chr13 96322541 96325532 -5547637 - L1MB2 LINE L1 -3502 3360 6 223 300 84 28 chr13 96326631 96326740 -5546429 + MIR SINE MIR 74 187 -57 1248 201 41 30 chr13 96327374 96327519 -5545650 - AluJo SINE Alu -40 272 121 230 0 33 0 chr13 96327519 96327549 -5545620 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1248 201 41 30 chr13 96327549 96327671 -5545498 - AluJo SINE Alu -191 121 2 678 146 0 49 chr13 96328738 96328861 -5544308 - FLAM_C SINE Alu -4 139 23 241 178 189 56 chr13 96329268 96329358 -5543811 + MER46C DNA MER2_type 5 106 -232 273 312 26 0 chr13 96329624 96329701 -5543468 - MIR3 SINE MIR -16 192 114 1421 212 36 7 chr13 96330025 96330303 -5542866 + AluJo SINE Alu 2 287 -25 477 285 15 0 chr13 96330537 96330667 -5542502 - L2 LINE L2 -696 2618 2487 632 245 109 98 chr13 96330669 96331045 -5542124 - MLT1D LTR MaLR 0 505 126 1369 288 140 4 chr13 96331159 96331808 -5541361 - L2 LINE L2 -834 2480 1653 1011 57 108 0 chr13 96331808 96331966 -5541203 - L1P LINE L1 -725 5429 5255 3148 60 0 0 chr13 96331966 96332362 -5540807 + L1PA8 LINE L1 5774 6170 -2 279 336 22 15 chr13 96332362 96332499 -5540670 - L2 LINE L2 -1653 1661 1524 421 341 34 23 chr13 96332505 96332681 -5540488 - MER5B DNA MER1_type 0 178 1 253 324 147 12 chr13 96332692 96332862 -5540307 - L2 LINE L2 -1854 1460 1268 201 240 0 0 chr13 96333514 96333564 -5539605 + (CA)n Simple_repeat Simple_repeat 1 50 0 872 193 40 7 chr13 96333917 96334236 -5538933 - MLT1A2 LTR MaLR -8 366 4 197 287 85 70 chr13 96336072 96336201 -5536968 + L2 LINE L2 2342 2472 -842 253 295 148 38 chr13 96338091 96338301 -5534868 + MIR SINE MIR 30 262 0 287 229 21 52 chr13 96338612 96338634 -5534535 - MIR SINE MIR -16 246 225 315 0 0 0 chr13 96338634 96338669 -5534500 + (TG)n Simple_repeat Simple_repeat 1 35 0 287 229 21 52 chr13 96338669 96338742 -5534427 - MIR SINE MIR -37 225 154 377 197 107 52 chr13 96338777 96339010 -5534159 + MLT1C LTR MaLR 67 312 -155 331 267 13 0 chr13 96339327 96339402 -5533767 - L2 LINE L2 0 3313 3238 265 101 0 174 chr13 96339524 96339575 -5533594 - MLT2D LTR ERVL 0 414 390 207 0 0 0 chr13 96339575 96339598 -5533571 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 101 0 174 chr13 96339598 96339615 -5533554 - MLT2D LTR ERVL -24 390 372 231 238 60 0 chr13 96339626 96339710 -5533459 + L1MC4 LINE L1 6614 6702 -1340 269 231 0 11 chr13 96339713 96339804 -5533365 + (TA)n Simple_repeat Simple_repeat 2 91 0 696 298 63 25 chr13 96340676 96341042 -5532127 + L2 LINE L2 1737 2116 -1198 1546 223 9 24 chr13 96341051 96341392 -5531777 - MLT1A1 LTR MaLR 0 365 30 817 280 134 16 chr13 96341392 96341764 -5531405 + L2 LINE L2 2898 3313 0 313 342 9 9 chr13 96341815 96341926 -5531243 + L2 LINE L2 2564 2674 -640 215 30 0 30 chr13 96341982 96342015 -5531154 + (TAA)n Simple_repeat Simple_repeat 2 33 0 210 331 41 25 chr13 96343694 96343815 -5529354 - L2 LINE L2 0 3272 3150 612 217 35 0 chr13 96344181 96344324 -5528845 + MER5A DNA MER1_type 1 148 -41 250 301 39 29 chr13 96344390 96344493 -5528676 + MER20B DNA MER1_type 89 192 -591 268 325 69 32 chr13 96344538 96344576 -5528593 + L2 LINE L2 2889 2924 -348 4541 127 45 1 chr13 96344576 96345261 -5527908 - LTR62 LTR ERVK -2 717 3 268 325 69 32 chr13 96345261 96345410 -5527759 + L2 LINE L2 2924 3083 -189 186 43 0 0 chr13 96345677 96345700 -5527469 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2285 89 7 0 chr13 96346143 96346435 -5526734 - AluSc SINE Alu -15 294 1 289 283 22 0 chr13 96346582 96346674 -5526495 - LTR16B LTR ERVL 0 464 371 2494 205 140 52 chr13 96346765 96347287 -5525882 + MER21B LTR ERV1 15 628 -235 2424 85 0 0 chr13 96347287 96347582 -5525587 - AluSc SINE Alu -14 295 1 2494 205 140 52 chr13 96347582 96347831 -5525338 + MER21B LTR ERV1 628 854 -9 1591 191 40 42 chr13 96347919 96348297 -5524872 - MLT1B LTR MaLR -10 380 4 576 258 85 42 chr13 96348309 96348592 -5524577 - LTR16B LTR ERVL -160 304 10 219 373 17 0 chr13 96349845 96349963 -5523206 + L3 LINE CR1 709 828 -749 247 318 151 56 chr13 96350008 96350313 -5522856 + L3 LINE CR1 946 1279 -298 237 306 82 12 chr13 96351132 96351217 -5521952 + MIR SINE MIR 95 185 -77 22 35 0 0 chr13 96351296 96351325 -5521844 + AT_rich Low_complexity Low_complexity 1 29 0 213 150 25 0 chr13 96352506 96352546 -5520623 + T-rich Low_complexity Low_complexity 3 43 0 260 148 16 0 chr13 96353677 96353738 -5519431 + GA-rich Low_complexity Low_complexity 1 62 0 757 178 7 0 chr13 96353789 96353924 -5519245 - FRAM SINE Alu -1 175 40 2025 219 39 22 chr13 96355484 96355653 -5517516 - L1MB5 LINE L1 -13 6161 5993 2896 220 71 76 chr13 96355653 96355973 -5517196 - L1MD3 LINE L1 -501 5679 5359 3232 122 13 0 chr13 96355973 96356432 -5516737 - L1PA13 LINE L1 -4 6159 5695 2896 220 71 76 chr13 96356432 96357092 -5516077 - L1MD3 LINE L1 -821 5359 5048 2378 92 3 0 chr13 96357092 96357395 -5515774 + AluSp SINE Alu 1 304 -9 2896 220 71 76 chr13 96357395 96357849 -5515320 - L1MD3 LINE L1 -1132 5048 4593 308 228 120 11 chr13 96358115 96358207 -5514962 + L1ME3 LINE L1 3814 3915 -2231 694 311 31 31 chr13 96358313 96358705 -5514464 + L1PA16 LINE L1 5461 5852 -314 * 2381 253 26 24 chr13 96358356 96359019 -5514150 + L1ME3 LINE L1 5499 6162 0 272 320 93 10 chr13 96359020 96359214 -5513955 - L1M4 LINE L1 -1242 4904 4695 21 0 0 0 chr13 96359236 96359257 -5513912 + AT_rich Low_complexity Low_complexity 1 21 0 2230 135 0 0 chr13 96359972 96360284 -5512885 - AluSx SINE Alu 0 312 1 224 237 213 18 chr13 96361115 96361257 -5511912 - MIR SINE MIR -56 206 33 246 32 0 0 chr13 96361328 96361359 -5511810 + (TC)n Simple_repeat Simple_repeat 2 32 0 487 194 19 12 chr13 96361359 96361519 -5511650 + (TA)n Simple_repeat Simple_repeat 1 161 0 5574 239 73 34 chr13 96362192 96362312 -5510857 + L1M4 LINE L1 21 135 -6509 2328 112 3 0 chr13 96362312 96362624 -5510545 + AluSq SINE Alu 1 313 0 5574 239 73 34 chr13 96362624 96363521 -5509648 + L1M4 LINE L1 135 995 -5649 1563 200 97 32 chr13 96363521 96363891 -5509278 + MSTD LTR MaLR 1 394 -2 5574 239 73 34 chr13 96363891 96366044 -5507125 + L1M4 LINE L1 995 3363 -3281 1696 153 13 80 chr13 96366046 96366419 -5506750 + MLT1B LTR MaLR 1 348 -42 575 217 14 7 chr13 96366531 96366669 -5506500 - L1MC1 LINE L1 -56 6277 6139 996 245 103 45 chr13 96366677 96366981 -5506188 + L1M4 LINE L1 3513 3798 -2846 3661 197 42 13 chr13 96366981 96367666 -5505503 + MER44D DNA MER2_type 1 705 0 996 245 103 45 chr13 96367666 96367960 -5505209 + L1M4 LINE L1 3798 4146 -2498 250 295 109 6 chr13 96368085 96368241 -5504928 + L1MDb LINE L1 1090 1261 -5148 281 310 17 52 chr13 96368539 96368655 -5504514 + L2 LINE L2 3190 3301 -12 534 239 23 28 chr13 96369870 96370046 -5503123 + MER106A DNA MER1_type 6 180 -56 203 357 0 0 chr13 96370061 96370131 -5503038 + MER5A DNA MER1_type 119 188 -1 364 269 15 15 chr13 96370409 96370539 -5502630 - L1MC4 LINE L1 0 8042 7913 394 368 35 20 chr13 96371355 96371556 -5501613 + MIR SINE MIR 16 219 -43 611 244 0 48 chr13 96372089 96372257 -5500912 - MER63 DNA MER1_type -2 1060 901 375 265 136 0 chr13 96372494 96372641 -5500528 - MIR SINE MIR -12 250 84 24 0 0 0 chr13 96374242 96374266 -5498903 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr13 96375133 96375159 -5498010 + AT_rich Low_complexity Low_complexity 1 26 0 543 273 11 68 chr13 96375442 96375618 -5497551 - MER5B DNA MER1_type -6 172 7 2249 80 3 7 chr13 96376007 96376319 -5496850 - AluY SINE Alu 0 311 1 245 244 90 39 chr13 96376838 96376916 -5496253 - MIR SINE MIR -4 258 177 483 233 88 46 chr13 96379005 96379186 -5493983 - MIR SINE MIR -33 229 44 2060 103 3 51 chr13 96379285 96379597 -5493572 + AluSq SINE Alu 1 297 -16 433 188 0 26 chr13 96382573 96382690 -5490479 + CT-rich Low_complexity Low_complexity 2 115 0 2174 110 0 0 chr13 96382700 96382982 -5490187 - AluSq SINE Alu -31 282 1 287 280 104 8 chr13 96384001 96384126 -5489043 + MIR SINE MIR 57 193 -69 266 318 88 21 chr13 96384973 96385165 -5488004 - MIR SINE MIR -1 261 57 212 373 21 36 chr13 96385902 96386095 -5487074 - L3 LINE CR1 -601 976 787 714 259 75 63 chr13 96387664 96388062 -5485107 + L2 LINE L2 2354 2756 -558 240 314 35 0 chr13 96388198 96388284 -5484885 + L2 LINE L2 2966 3054 -259 207 0 0 0 chr13 96389249 96389272 -5483897 + (GA)n Simple_repeat Simple_repeat 2 24 0 303 298 18 0 chr13 96390999 96391113 -5482056 + L1MC/D LINE L1 2716 2831 -3315 198 0 0 0 chr13 96391586 96391608 -5481561 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 313 327 146 48 chr13 96391661 96392307 -5480862 + L2 LINE L2 2135 2843 -471 2334 95 3 3 chr13 96392840 96393144 -5480025 + AluSg SINE Alu 1 304 -6 363 283 127 8 chr13 96393594 96393838 -5479331 - L2 LINE L2 -2 3311 3039 338 163 66 18 chr13 96393847 96394013 -5479156 + (TA)n Simple_repeat Simple_repeat 2 175 0 666 246 10 29 chr13 96394243 96394450 -5478719 + MER3 DNA MER1_type 5 207 -2 1783 165 23 29 chr13 96395727 96396036 -5477133 + AluJo SINE Alu 1 307 -5 227 233 17 17 chr13 96396374 96396434 -5476735 - MIR SINE MIR -110 152 93 566 296 54 29 chr13 96398596 96398836 -5474333 - MIR SINE MIR -12 250 5 300 256 22 11 chr13 96400764 96400854 -5472315 + L1MC/D LINE L1 4614 4704 -1442 227 326 27 20 chr13 96401308 96401455 -5471714 + L1MC/D LINE L1 5701 5848 -1960 186 103 0 0 chr13 96404224 96404253 -5468916 + (TG)n Simple_repeat Simple_repeat 2 30 0 1868 111 15 0 chr13 96405886 96406148 -5467021 - AluSg SINE Alu -44 266 1 204 40 0 0 chr13 96406960 96406985 -5466184 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1570 180 11 7 chr13 96406985 96407263 -5465906 - AluSx SINE Alu -33 279 1 273 338 169 14 chr13 96409167 96409374 -5463795 - MIR SINE MIR -6 256 18 1882 127 0 28 chr13 96409559 96409900 -5463269 - AluSq SINE Alu 0 333 1 276 83 0 0 chr13 96410628 96410676 -5462493 + L1PA8 LINE L1 6125 6172 0 2190 253 41 38 chr13 96410805 96412413 -5460756 - L1MD1 LINE L1 -369 5942 4322 236 261 45 68 chr13 96414277 96414365 -5458804 + MER91A DNA MER1_type 111 196 0 1224 174 0 0 chr13 96414783 96414973 -5458196 + AluJb SINE Alu 107 296 -16 292 77 0 0 chr13 96415010 96415049 -5458120 + MLT2B1 LTR ERVL 482 520 0 589 283 117 55 chr13 96417167 96417918 -5455251 + L2 LINE L2 2502 3303 -10 208 401 141 10 chr13 96418347 96418539 -5454630 + L2 LINE L2 3056 3272 0 2379 79 3 7 chr13 96419696 96419999 -5453170 + AluY SINE Alu 1 302 -9 201 323 46 0 chr13 96421902 96421967 -5451202 + L2 LINE L2 3188 3255 -17 250 346 134 8 chr13 96424040 96424167 -5449002 - L2 LINE L2 -2819 495 353 591 310 0 0 chr13 96424288 96424446 -5448723 + MER45A DNA AcHobo 1 158 -20 2990 275 54 10 chr13 96425500 96426743 -5446426 - L1M4 LINE L1 -788 5358 4061 854 276 98 17 chr13 96426754 96427286 -5445883 - L1MD1 LINE L1 -4048 2348 1774 2518 261 125 9 chr13 96427303 96428367 -5444802 - L1MD1 LINE L1 -5173 1223 37 2448 104 0 0 chr13 96428627 96428936 -5444233 + AluSc SINE Alu 1 309 0 27 0 0 0 chr13 96430543 96430570 -5442599 + AT_rich Low_complexity Low_complexity 1 27 0 808 255 49 28 chr13 96430825 96431151 -5442018 - MLT1C LTR MaLR -83 384 52 22 0 0 0 chr13 96431912 96431934 -5441235 + AT_rich Low_complexity Low_complexity 1 22 0 1787 130 127 21 chr13 96432438 96432777 -5440392 + THE1C LTR MaLR 1 375 0 247 231 0 0 chr13 96434155 96434207 -5438962 - L2 LINE L2 0 3313 3262 915 269 196 21 chr13 96434611 96435367 -5437802 - L2 LINE L2 -64 3249 2357 477 343 28 16 chr13 96435612 96435860 -5437309 - MIR SINE MIR -2 260 10 2357 75 0 23 chr13 96436029 96436334 -5436835 + AluY SINE Alu 1 298 -13 868 211 29 10 chr13 96436339 96436547 -5436622 + MER82 DNA MER2_type 1 212 -441 432 302 37 5 chr13 96436858 96437047 -5436122 - LTR67 LTR ERVL -9 548 354 36779 61 3 6 chr13 96437464 96443631 -5429538 - L1PA5 LINE L1 -3 6151 1 1307 235 72 43 chr13 96443631 96444073 -5429096 + MER82 DNA MER2_type 199 653 0 1775 179 3 3 chr13 96444351 96444642 -5428527 - AluSx SINE Alu -21 291 1 22 0 0 0 chr13 96444775 96444797 -5428372 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr13 96444864 96444891 -5428278 + AT_rich Low_complexity Low_complexity 1 27 0 266 379 100 32 chr13 96446484 96447044 -5426125 + L2 LINE L2 1363 1960 -1354 634 247 128 46 chr13 96447364 96447769 -5425400 + L1MC3 LINE L1 21 336 -5709 3693 222 112 39 chr13 96447817 96448254 -5424915 + L1MC3 LINE L1 760 1164 -5400 2302 52 0 21 chr13 96448254 96448588 -5424581 + AluY SINE Alu 1 328 0 3693 222 112 39 chr13 96448588 96448769 -5424400 + L1MC3 LINE L1 1164 1330 -5234 904 220 8 8 chr13 96448769 96449028 -5424141 + L1MA4 LINE L1 6042 6300 0 3693 222 112 39 chr13 96449028 96450909 -5422260 + L1MC3 LINE L1 1330 3618 -2946 828 269 37 39 chr13 96450923 96451332 -5421837 + L1MC3 LINE L1 5157 5564 -1000 1673 155 34 12 chr13 96451397 96451719 -5421450 - L1MA8 LINE L1 -22 6269 5941 8665 207 69 28 chr13 96451728 96452835 -5420334 + L1MC3 LINE L1 5672 6732 -1471 1832 119 0 113 chr13 96452835 96453170 -5419999 + AluSx SINE Alu 1 297 -5 8665 207 69 28 chr13 96453170 96453410 -5419759 + L1MC3 LINE L1 6732 6961 -1242 249 33 0 0 chr13 96453410 96453440 -5419729 + (CA)n Simple_repeat Simple_repeat 1 30 0 8665 207 69 28 chr13 96453440 96454516 -5418653 + L1MC3 LINE L1 6961 8196 -7 1663 110 0 89 chr13 96454980 96455271 -5417898 - AluSg SINE Alu -2 308 44 2268 105 7 7 chr13 96455438 96455744 -5417425 + AluSq SINE Alu 3 308 -5 283 310 20 20 chr13 96456950 96457050 -5416119 + MIR SINE MIR 3 102 -160 24 32 0 0 chr13 96457931 96457962 -5415207 + AT_rich Low_complexity Low_complexity 1 31 0 744 147 49 0 chr13 96459070 96459213 -5413956 - MLT2B1 LTR ERVL -370 150 1 2359 29 7 0 chr13 96459831 96460111 -5413058 - L1PA4 LINE L1 -2 6153 5872 1908 167 37 6 chr13 96460255 96460609 -5412560 + MLT1A1 LTR MaLR 1 365 0 2566 37 3 0 chr13 96461888 96462186 -5410983 + AluY SINE Alu 1 299 -12 1490 146 15 0 chr13 96462276 96462537 -5410632 - L1MA4 LINE L1 -5 6295 6031 546 204 1 0 chr13 96462999 96463128 -5410041 + L1MA4 LINE L1 5900 6029 -268 * 1558 136 15 82 chr13 96463121 96463451 -5409718 - L1MA4 LINE L1 -251 6049 5742 230 200 53 80 chr13 96464021 96464096 -5409073 - MIR SINE MIR -164 98 26 3985 154 38 1 chr13 96464206 96464946 -5408223 - L1PB4 LINE L1 -1 6155 5389 297 262 19 56 chr13 96465447 96465554 -5407615 - L2 LINE L2 -1 3312 3210 261 330 189 29 chr13 96465807 96466136 -5407033 - L2 LINE L2 -701 2613 2338 344 22 0 22 chr13 96466136 96466182 -5406987 + (TG)n Simple_repeat Simple_repeat 2 46 0 261 330 189 29 chr13 96466182 96466376 -5406793 - L2 LINE L2 -976 2338 2006 327 228 69 14 chr13 96467297 96467442 -5405727 - L1ME4a LINE L1 -4 6117 5965 340 244 127 52 chr13 96467734 96468025 -5405144 - HAL1 LINE L1 -4 2503 2191 2333 67 0 10 chr13 96469430 96469750 -5403419 - AluY SINE Alu 0 311 1 331 320 113 39 chr13 96470265 96470496 -5402673 - MIR SINE MIR -9 253 6 329 225 35 61 chr13 96471165 96471337 -5401832 + L1MC/D LINE L1 5273 5392 -770 22 70 0 0 chr13 96471340 96471383 -5401786 + AT_rich Low_complexity Low_complexity 1 43 0 271 332 102 70 chr13 96471632 96472162 -5401007 - L2 LINE L2 -338 2976 2430 4470 165 26 25 chr13 96473689 96474423 -5398746 - L1MC1 LINE L1 -8 6325 5588 1653 148 39 33 chr13 96474423 96474728 -5398441 + AluJb SINE Alu 6 312 0 4470 165 26 25 chr13 96474728 96474872 -5398297 - L1MC1 LINE L1 -745 5588 5446 670 246 64 43 chr13 96474872 96475152 -5398017 + L1MC4 LINE L1 7611 7896 -146 1776 198 12 12 chr13 96475250 96475589 -5397580 - MLT1A1 LTR MaLR 0 365 27 1842 204 68 11 chr13 96475641 96476083 -5397086 - MLT1C LTR MaLR 0 467 1 261 203 16 31 chr13 96476083 96476147 -5397022 + L1MC4 LINE L1 7974 8036 -6 1385 121 5 5 chr13 96476241 96476481 -5396688 + AluSg/x SINE Alu 85 324 0 284 280 373 0 chr13 96479112 96479262 -5393907 - MIR SINE MIR -55 207 2 273 351 15 23 chr13 96479438 96479569 -5393600 - MIR SINE MIR -109 153 24 401 272 43 62 chr13 96479615 96479872 -5393297 - LTR41 LTR ERVL -12 761 510 415 218 18 59 chr13 96480197 96480367 -5392802 + LTR41 LTR ERVL 591 753 -20 2215 115 0 0 chr13 96480685 96480973 -5392196 + AluSx SINE Alu 1 288 -24 216 0 0 0 chr13 96481264 96481288 -5391881 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 422 226 26 113 chr13 96481624 96481889 -5391280 - LTR41 LTR ERVL -13 760 519 380 161 46 0 chr13 96482110 96482197 -5390972 - LTR41 LTR ERVL -592 181 91 247 150 33 17 chr13 96482792 96482852 -5390317 + GA-rich Low_complexity Low_complexity 3 63 0 263 312 13 0 chr13 96483048 96483125 -5390044 - L2 LINE L2 -9 3263 3186 2052 160 151 72 chr13 96483649 96484009 -5389160 - LTR18B LTR ERVL 0 614 284 2552 96 3 6 chr13 96484009 96484365 -5388804 + THE1A LTR MaLR 1 355 0 11945 90 5 0 chr13 96484365 96485938 -5387231 + THE1A-int LTR MaLR 1 1580 0 2575 95 17 0 chr13 96485938 96486287 -5386882 + THE1A LTR MaLR 1 355 0 2052 160 151 72 chr13 96486287 96486493 -5386676 - LTR18B LTR ERVL -329 285 1 21 0 0 0 chr13 96486860 96486881 -5386288 + AT_rich Low_complexity Low_complexity 1 21 0 723 208 38 64 chr13 96489413 96489677 -5383492 + L1MA10 LINE L1 6078 6334 0 243 0 0 0 chr13 96489990 96490017 -5383152 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 237 370 98 23 chr13 96491015 96491494 -5381675 + L2 LINE L2 1833 2347 -967 24 91 0 0 chr13 96492746 96492812 -5380357 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr13 96493033 96493061 -5380108 + AT_rich Low_complexity Low_complexity 1 28 0 493 321 49 11 chr13 96493770 96494000 -5379169 - MIR SINE MIR -11 251 10 1076 157 75 31 chr13 96494649 96494861 -5378308 - L1MD3 LINE L1 0 7995 7769 2107 137 0 0 chr13 96494861 96495160 -5378009 - AluSq SINE Alu -14 299 1 1076 157 75 31 chr13 96495160 96495202 -5377967 - L1MD3 LINE L1 -226 7769 7730 2203 65 0 11 chr13 96495377 96495654 -5377515 + AluY SINE Alu 28 301 -10 318 223 122 40 chr13 96496081 96496158 -5377011 - L1ME4a LINE L1 -3 6118 6049 2953 160 20 4 chr13 96496158 96496694 -5376475 + L1PA15 LINE L1 5620 6164 -1 318 223 122 40 chr13 96496694 96496764 -5376405 - L1ME4a LINE L1 -72 6049 5959 25 51 0 0 chr13 96497309 96497348 -5375821 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr13 96497443 96497467 -5375702 + AT_rich Low_complexity Low_complexity 1 24 0 2091 109 0 56 chr13 96497535 96497856 -5375313 - AluSg SINE Alu -7 303 1 2224 262 134 59 chr13 96498058 96498606 -5374563 - L2 LINE L2 -72 3241 2736 5636 33 1 3 chr13 96498606 96499277 -5373892 + L1PA4 LINE L1 5483 6152 -3 2224 262 134 59 chr13 96499277 96500030 -5373139 - L2 LINE L2 -577 2736 1836 2831 19 0 0 chr13 96501037 96501353 -5371816 - AluYb8 SINE Alu -2 316 1 1123 242 131 12 chr13 96501606 96502027 -5371142 - Charlie4a DNA MER1_type -17 491 21 339 317 160 3 chr13 96503457 96503744 -5369425 + L1MC/D LINE L1 5255 5586 -656 401 310 75 34 chr13 96503970 96504209 -5368960 + MIR SINE MIR 6 254 -8 4887 184 31 9 chr13 96504307 96505297 -5367872 - L1MA7 LINE L1 -2 6289 5278 256 262 181 40 chr13 96506406 96506555 -5366614 + MIR SINE MIR 33 202 -60 180 0 0 0 chr13 96506852 96506872 -5366297 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1450 196 33 30 chr13 96508146 96508274 -5364895 + AluJb SINE Alu 1 127 -185 315 0 0 0 chr13 96508274 96508309 -5364860 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1450 196 33 30 chr13 96508309 96508481 -5364688 + AluJb SINE Alu 127 302 -10 182 294 39 0 chr13 96508633 96508684 -5364485 + L2 LINE L2 3205 3257 -15 31 76 0 0 chr13 96509174 96509240 -5363929 + AT_rich Low_complexity Low_complexity 1 66 0 607 258 5 5 chr13 96509869 96510059 -5363110 - L1 LINE L1 -2657 3489 3300 272 206 88 0 chr13 96510064 96510132 -5363037 - L1MDb LINE L1 -6295 114 41 1920 138 3 28 chr13 96510641 96510961 -5362208 - AluSq SINE Alu -1 312 1 1935 146 72 50 chr13 96511687 96512106 -5361063 - MSTA LTR MaLR 0 428 1 185 316 102 20 chr13 96512611 96512709 -5360460 + L2 LINE L2 3186 3291 -22 237 380 54 18 chr13 96514600 96514766 -5358403 + L2 LINE L2 3101 3272 0 1121 219 38 90 chr13 96515015 96515381 -5357788 + MLT1A1 LTR MaLR 19 365 0 341 283 17 8 chr13 96516689 96516809 -5356360 + CT-rich Low_complexity Low_complexity 4 124 0 1030 260 118 62 chr13 96517397 96517580 -5355589 + L1ME2 LINE L1 4384 4555 -1591 1692 191 66 37 chr13 96517580 96518068 -5355101 + MLT1D LTR MaLR 4 505 0 1030 260 118 62 chr13 96518068 96518689 -5354480 + L1ME2 LINE L1 4555 5233 -913 464 253 60 61 chr13 96518791 96519149 -5354020 + LTR30 LTR ERV1 104 532 -24 2113 235 120 24 chr13 96519167 96520019 -5353150 + L1ME2 LINE L1 5229 6164 0 1899 167 0 0 chr13 96520450 96520761 -5352408 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr13 96520792 96520813 -5352356 + AT_rich Low_complexity Low_complexity 1 21 0 255 314 11 63 chr13 96520813 96521163 -5352006 + L1ME3A LINE L1 3081 3412 -2734 652 319 55 38 chr13 96521248 96521753 -5351416 + L1ME3A LINE L1 5429 5942 -228 29 28 0 0 chr13 96522011 96522047 -5351122 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr13 96523249 96523295 -5349874 + AT_rich Low_complexity Low_complexity 1 46 0 231 283 0 0 chr13 96524236 96524289 -5348880 + L2 LINE L2 3219 3271 -1 735 251 6 0 chr13 96526868 96527047 -5346122 + L1M4 LINE L1 2533 2712 -3434 5876 226 62 38 chr13 96527051 96527927 -5345242 + L1M4 LINE L1 3280 4133 -2045 276 30 0 0 chr13 96527927 96527960 -5345209 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 5876 226 62 38 chr13 96527960 96529495 -5343674 + L1M4 LINE L1 4133 5752 -426 181 295 39 62 chr13 96530392 96530521 -5342648 - MIR SINE MIR -26 236 111 491 283 29 7 chr13 96530679 96530817 -5342352 + MIR SINE MIR 7 147 -115 933 264 74 90 chr13 96530849 96531538 -5341631 + MER21B LTR ERV1 60 714 -149 370 291 27 0 chr13 96531555 96531665 -5341504 + MIR SINE MIR 140 252 -10 7754 17 0 0 chr13 96532197 96533114 -5340055 + L1PA3 LINE L1 5231 6147 -8 853 203 69 15 chr13 96533351 96533553 -5339616 - MLT1A1 LTR MaLR -135 230 18 234 204 0 0 chr13 96533607 96533651 -5339518 - MER53 DNA DNA 0 189 146 2094 133 0 0 chr13 96533867 96534161 -5339008 - AluSq SINE Alu -19 294 1 344 309 46 26 chr13 96534161 96534313 -5338856 + MLT1J LTR MaLR 311 465 -46 2369 91 3 0 chr13 96534493 96534790 -5338379 - AluSx SINE Alu -14 298 1 1651 179 124 52 chr13 96536427 96536903 -5336266 - MER67D LTR ERV1 -4 510 1 279 0 0 0 chr13 96536987 96537018 -5336151 + (TC)n Simple_repeat Simple_repeat 1 31 0 2193 123 47 19 chr13 96537465 96537830 -5335339 + THE1C LTR MaLR 1 375 0 9904 121 32 12 chr13 96537830 96539379 -5333790 + THE1C-int LTR MaLR 1 1580 0 2196 104 52 22 chr13 96539379 96539743 -5333426 + THE1C LTR MaLR 1 375 0 282 282 51 0 chr13 96539904 96539982 -5333187 - MIR3 SINE MIR -38 170 89 639 245 43 67 chr13 96540415 96540668 -5332501 + MIR SINE MIR 1 247 -15 1953 117 7 42 chr13 96540721 96541028 -5332141 + AluSx SINE Alu 1 296 -16 414 158 0 30 chr13 96541039 96541140 -5332029 + (CA)n Simple_repeat Simple_repeat 2 99 0 189 370 0 0 chr13 96541140 96541213 -5331956 + L3 LINE CR1 1238 1310 -267 2337 159 18 0 chr13 96541314 96541697 -5331472 - MSTC LTR MaLR 0 428 39 715 232 42 0 chr13 96542108 96542276 -5330893 + LTR40a LTR ERVL 345 519 0 1410 184 8 4 chr13 96542898 96543143 -5330026 - AluJo SINE Alu -24 288 43 2128 245 88 35 chr13 96543164 96544078 -5329091 + L1M4 LINE L1 4399 5360 -786 2303 213 39 22 chr13 96544079 96544667 -5328502 + L1MA9 LINE L1 4644 5241 -905 3553 191 47 18 chr13 96544697 96545610 -5327559 + L1MA9 LINE L1 5225 6282 -30 493 283 33 0 chr13 96545687 96545839 -5327330 + L1ME1 LINE L1 6001 6157 -9 21 71 0 0 chr13 96546035 96546077 -5327092 + AT_rich Low_complexity Low_complexity 1 42 0 188 256 24 104 chr13 96547084 96547209 -5325960 - L3 LINE CR1 -838 739 625 197 196 18 0 chr13 96547259 96547315 -5325854 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr13 96547498 96547526 -5325643 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr13 96547551 96547582 -5325587 + AT_rich Low_complexity Low_complexity 1 31 0 660 209 104 133 chr13 96547644 96548027 -5325142 - MLT1A2 LTR MaLR 0 374 3 1507 194 29 0 chr13 96548077 96548356 -5324813 - AluJb SINE Alu -24 288 2 282 193 0 0 chr13 96548811 96548868 -5324301 + (TA)n Simple_repeat Simple_repeat 2 58 0 28 48 0 0 chr13 96548880 96548922 -5324247 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 96549909 96549935 -5323234 + AT_rich Low_complexity Low_complexity 1 26 0 251 328 16 16 chr13 96550128 96550256 -5322913 + CT-rich Low_complexity Low_complexity 2 129 0 1277 201 13 49 chr13 96550870 96551174 -5321995 + AluJo SINE Alu 1 293 -19 2272 114 0 0 chr13 96551527 96551835 -5321334 - AluSx SINE Alu 0 312 5 243 0 0 0 chr13 96551874 96551901 -5321268 + (TG)n Simple_repeat Simple_repeat 2 28 0 423 0 0 0 chr13 96551968 96552015 -5321154 + (TG)n Simple_repeat Simple_repeat 2 48 0 356 276 0 57 chr13 96554750 96554855 -5318314 + MIR SINE MIR 58 156 -106 193 331 92 31 chr13 96555117 96555280 -5317889 - MIR SINE MIR -38 224 52 926 156 17 46 chr13 96555945 96556118 -5317051 - FRAM SINE Alu -12 164 1 297 0 0 0 chr13 96556303 96556336 -5316833 + (TG)n Simple_repeat Simple_repeat 2 34 0 1942 141 10 10 chr13 96556337 96556642 -5316527 - AluSx SINE Alu -7 305 1 226 205 0 0 chr13 96558531 96558570 -5314599 + polypyrimidine Low_complexity Low_complexity 2 40 0 814 265 57 37 chr13 96559650 96559948 -5313221 - MER87 LTR ERV1 -30 511 208 662 251 199 15 chr13 96560436 96560707 -5312462 + MER5C DNA MER1_type 3 323 -1 830 312 108 63 chr13 96560708 96561661 -5311508 + L2 LINE L2 2318 3313 0 4123 119 14 0 chr13 96562361 96562983 -5310186 - L1PA14 LINE L1 0 6161 5531 1344 178 0 0 chr13 96562984 96563225 -5309944 + L1P LINE L1 4832 5072 -1074 845 290 136 17 chr13 96563415 96563936 -5309233 - L1ME3A LINE L1 -9 6230 5648 485 268 110 14 chr13 96563973 96564410 -5308759 - L1ME3A LINE L1 -678 5553 5076 1407 178 0 0 chr13 96564423 96564654 -5308515 + Ricksha DNA DNA 8 238 -3008 566 193 9 0 chr13 96564653 96564762 -5308407 - Ricksha DNA DNA -1144 110 1 * 2427 276 100 37 chr13 96564845 96566777 -5306392 - L1ME3A LINE L1 -1256 4959 2907 627 188 15 99 chr13 96566826 96566870 -5306299 - L1MA9 LINE L1 -35 6277 6231 1578 169 32 61 chr13 96566870 96567183 -5305986 - AluJb SINE Alu -5 307 4 627 188 15 99 chr13 96567183 96567340 -5305829 - L1MA9 LINE L1 -81 6231 6093 465 285 88 15 chr13 96567557 96568106 -5305063 - L1MEc LINE L1 -3542 2673 2127 31 88 0 0 chr13 96568316 96568396 -5304773 + AT_rich Low_complexity Low_complexity 1 80 0 1537 196 25 4 chr13 96569410 96569532 -5303637 + AluJb SINE Alu 1 119 -193 261 0 0 0 chr13 96569532 96569561 -5303608 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1537 196 25 4 chr13 96569561 96569718 -5303451 + AluJb SINE Alu 119 286 -26 22 0 0 0 chr13 96569728 96569750 -5303419 + AT_rich Low_complexity Low_complexity 1 22 0 932 288 119 47 chr13 96570016 96570882 -5302287 - L1ME3A LINE L1 -12 6141 5242 1065 276 134 55 chr13 96570911 96570989 -5302180 - L1ME3A LINE L1 -1178 4951 4881 2177 99 10 0 chr13 96570989 96571282 -5301887 + AluSg SINE Alu 1 296 -14 1065 276 134 55 chr13 96571282 96571791 -5301378 - L1ME3A LINE L1 -1248 4881 4414 2653 31 0 22 chr13 96571791 96572109 -5301060 + AluY SINE Alu 1 311 0 1065 276 134 55 chr13 96572109 96573099 -5300070 - L1ME3A LINE L1 -1715 4414 3247 408 294 59 7 chr13 96573167 96573320 -5299849 - L1ME3A LINE L1 -3086 3043 2883 317 301 105 38 chr13 96573385 96573651 -5299518 - L1ME3A LINE L1 -5052 1067 784 408 20 0 0 chr13 96573671 96573720 -5299449 + (TG)n Simple_repeat Simple_repeat 2 50 0 38 85 0 0 chr13 96574958 96575052 -5298117 + AT_rich Low_complexity Low_complexity 1 94 0 460 325 80 19 chr13 96576772 96576984 -5296185 - MIR SINE MIR -15 247 23 387 60 0 0 chr13 96577036 96577086 -5296083 + (TTA)n Simple_repeat Simple_repeat 3 52 0 24 0 0 0 chr13 96578025 96578049 -5295120 + AT_rich Low_complexity Low_complexity 1 24 0 946 154 0 0 chr13 96578094 96578243 -5294926 + AluJb SINE Alu 155 303 -9 318 211 72 86 chr13 96578659 96578811 -5294358 + HsTC2 DNA Tc2 29 1896 -2 21 0 0 0 chr13 96578968 96578989 -5294180 + AT_rich Low_complexity Low_complexity 1 21 0 2012 145 0 3 chr13 96579018 96579314 -5293855 - AluSg SINE Alu -15 295 1 376 345 21 5 chr13 96579682 96579873 -5293296 + MIR SINE MIR 41 234 -28 353 313 96 72 chr13 96580124 96580461 -5292708 - L1M4 LINE L1 -942 5204 4852 4891 122 62 4 chr13 96580461 96581242 -5291927 + LTR1B LTR ERV1 1 826 0 353 313 96 72 chr13 96581242 96581364 -5291805 - L1M4 LINE L1 -1294 4852 4734 531 225 209 0 chr13 96581420 96581602 -5291567 - L1ME3A LINE L1 -103 6067 5848 7243 52 0 0 chr13 96581713 96583303 -5289866 - L1PA5 LINE L1 -2 6152 4562 7854 111 1 8 chr13 96583306 96584452 -5288717 + L1P LINE L1 657 1794 -4352 625 316 25 8 chr13 96584549 96584793 -5288376 - L1MC4a LINE L1 -111 7697 7450 1907 146 35 0 chr13 96585986 96586273 -5286896 - AluJo SINE Alu -15 297 1 2132 109 3 3 chr13 96587474 96587768 -5285401 - AluSp SINE Alu -19 294 1 224 316 13 0 chr13 96587965 96588041 -5285128 - MIR SINE MIR 0 262 186 251 242 0 0 chr13 96588230 96588292 -5284877 - MER103 DNA DNA -104 62 1 2454 43 0 23 chr13 96588336 96588635 -5284534 - AluY SINE Alu -19 292 1 2446 117 113 9 chr13 96588726 96589179 -5283990 - MER61D LTR ERV1 0 501 2 24 32 0 0 chr13 96590996 96591027 -5282142 + AT_rich Low_complexity Low_complexity 1 31 0 2161 118 13 0 chr13 96591121 96591426 -5281743 + AluSq SINE Alu 1 309 -4 1721 146 10 51 chr13 96592289 96592584 -5280585 - AluJb SINE Alu -21 291 9 24 96 0 0 chr13 96594344 96594417 -5278752 + AT_rich Low_complexity Low_complexity 1 73 0 2047 129 25 3 chr13 96594602 96594888 -5278281 - AluSx SINE Alu -20 292 1 672 179 35 43 chr13 96595661 96595860 -5277309 + MER6 DNA MER2_type -65 864 -1 1625 166 35 59 chr13 96596276 96596649 -5276520 - THE1B LTR MaLR 0 364 1 34 42 0 0 chr13 96597600 96597648 -5275521 + AT_rich Low_complexity Low_complexity 1 48 0 386 279 117 45 chr13 96597946 96598168 -5275001 + MIR SINE MIR 1 238 -24 217 382 124 22 chr13 96598220 96598445 -5274724 - MIR SINE MIR -13 249 2 29 47 0 0 chr13 96598576 96598619 -5274550 + AT_rich Low_complexity Low_complexity 1 43 0 1991 104 0 88 chr13 96599034 96599362 -5273807 + AluSx SINE Alu 1 299 -13 381 22 0 0 chr13 96600694 96600740 -5272429 + (TG)n Simple_repeat Simple_repeat 2 47 0 905 277 54 80 chr13 96602028 96602950 -5270219 - L1MEd LINE L1 -4863 1256 359 6397 227 12 37 chr13 96603829 96606644 -5266525 - L1PA16 LINE L1 -177 5989 3292 14703 148 65 35 chr13 96606769 96607334 -5265835 - L1PA15-16 LINE L1 -3864 2985 2438 189 0 0 0 chr13 96607334 96607355 -5265814 + (TC)n Simple_repeat Simple_repeat 2 22 0 14703 148 65 35 chr13 96607355 96609686 -5263483 - L1PA15-16 LINE L1 -4411 2438 1 506 299 27 7 chr13 96610587 96610734 -5262435 - MIR SINE MIR -93 169 20 242 264 19 75 chr13 96610895 96611001 -5262168 + L2 LINE L2 3213 3312 -1 1007 234 94 8 chr13 96611057 96611322 -5261847 + MLT1H LTR MaLR 1 288 -261 263 272 37 0 chr13 96611408 96611489 -5261680 + MLT1H LTR MaLR 443 526 -23 680 299 16 19 chr13 96611777 96612088 -5261081 + L1MA9 LINE L1 5973 6282 -30 193 372 16 25 chr13 96612335 96612456 -5260713 + MIR SINE MIR 35 154 -108 23 0 0 0 chr13 96613270 96613293 -5259876 + AT_rich Low_complexity Low_complexity 1 23 0 2710 98 0 6 chr13 96615605 96615971 -5257198 - THE1B LTR MaLR 0 364 1 2318 102 3 3 chr13 96616056 96616361 -5256808 + AluSp SINE Alu 3 307 -6 302 311 44 30 chr13 96616578 96616713 -5256456 + MIR SINE MIR 10 146 -116 2348 101 3 0 chr13 96618113 96618421 -5254748 + AluSp SINE Alu 1 309 -4 356 235 208 27 chr13 96618786 96618935 -5254234 + MER5A DNA MER1_type 9 184 -5 6844 101 12 12 chr13 96619385 96620442 -5252727 + MER11C LTR ERVK 1 1057 -14 396 323 121 54 chr13 96620786 96621117 -5252052 + L3 LINE CR1 966 1318 -259 1016 249 80 12 chr13 96621430 96621767 -5251402 - MLT1C LTR MaLR 0 467 108 1609 192 19 3 chr13 96621773 96622096 -5251073 + Tigger7 DNA MER2_type 1 328 -405 1118 175 52 14 chr13 96622096 96622415 -5250754 + Tigger7 DNA MER2_type 385 2491 0 326 257 0 48 chr13 96622419 96622524 -5250645 - MLT1C LTR MaLR -367 100 1 21 36 0 0 chr13 96623213 96623241 -5249928 + AT_rich Low_complexity Low_complexity 1 28 0 181 408 19 0 chr13 96624151 96624254 -5248915 + MIR3 SINE MIR 79 183 -25 415 279 43 31 chr13 96624929 96625090 -5248079 + MIR SINE MIR 36 198 -64 212 296 0 0 chr13 96625759 96625813 -5247356 - MIR SINE MIR -59 149 96 2076 139 3 0 chr13 96627660 96627983 -5245186 + AluSx SINE Alu 1 324 0 382 245 54 0 chr13 96628757 96628884 -5244285 + L1M4 LINE L1 4074 4207 -1939 297 0 0 0 chr13 96629999 96630032 -5243137 + (CA)n Simple_repeat Simple_repeat 2 34 0 378 334 158 21 chr13 96630226 96630958 -5242211 - L2 LINE L2 -106 3207 2368 273 281 26 35 chr13 96631421 96631535 -5241634 - MIR3 SINE MIR -5 203 91 192 182 0 0 chr13 96631782 96631826 -5241343 + (TG)n Simple_repeat Simple_repeat 1 44 0 2556 93 14 0 chr13 96632646 96633010 -5240159 + MER57B LTR ERV1 1 369 -65 220 304 11 22 chr13 96633080 96633261 -5239908 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2009 133 31 0 chr13 96633622 96633908 -5239261 - AluSx SINE Alu -17 295 1 186 103 0 0 chr13 96684301 96684330 -5188839 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 330 73 37 chr13 96687049 96687322 -5185847 - L1ME LINE L1 -260 5904 5622 1638 285 153 48 chr13 96687703 96689317 -5183852 - L1ME LINE L1 -1442 4704 2922 497 299 27 7 chr13 96690790 96690937 -5182232 - MIR SINE MIR -93 169 20 239 264 19 75 chr13 96691098 96691204 -5181965 + L2 LINE L2 3213 3312 -1 1067 227 110 17 chr13 96691260 96691560 -5181609 + MLT1H LTR MaLR 1 328 -221 293 297 33 0 chr13 96691611 96691702 -5181467 + MLT1H LTR MaLR 443 536 -13 781 299 16 22 chr13 96691970 96692291 -5180878 + L1MA9 LINE L1 5964 6282 -30 210 372 16 25 chr13 96692538 96692659 -5180510 + MIR SINE MIR 35 154 -108 2710 98 0 6 chr13 96695808 96696174 -5176995 - THE1B LTR MaLR 0 364 1 2309 102 3 3 chr13 96696259 96696563 -5176606 + AluSp SINE Alu 3 306 -7 302 311 44 30 chr13 96696780 96696915 -5176254 + MIR SINE MIR 10 146 -116 429 292 59 14 chr13 96699494 96699713 -5173456 - L1ME LINE L1 -383 5738 5510 204 342 107 46 chr13 96699810 96700006 -5173163 - MIR SINE MIR -28 234 27 320 43 22 0 chr13 96700052 96700098 -5173071 + (CA)n Simple_repeat Simple_repeat 1 47 0 320 222 62 12 chr13 96700134 96700215 -5172954 - HAL1b LINE L1 -102 1246 1162 410 149 53 11 chr13 96701892 96701986 -5171183 - L1PA15 LINE L1 -1 6164 6067 633 159 0 8 chr13 96701986 96702112 -5171057 + L1P LINE L1 5175 5299 -847 328 265 136 19 chr13 96704533 96704695 -5168474 - L1ME4a LINE L1 -11 6110 5930 1843 155 16 20 chr13 96704797 96705101 -5168068 - AluSx SINE Alu -9 303 1 1827 131 29 6 chr13 96705222 96705565 -5167604 + L1MA8 LINE L1 5939 6289 -2 280 250 54 0 chr13 96705665 96705757 -5167412 - L1ME4a LINE L1 -486 5635 5539 2374 69 0 0 chr13 96706490 96706778 -5166391 + AluY SINE Alu 1 288 -23 198 267 44 0 chr13 96706797 96706842 -5166327 - L2 LINE L2 -54 3218 3172 503 281 39 34 chr13 96706910 96707088 -5166081 - MIR SINE MIR 0 262 84 259 269 186 7 chr13 96707099 96707244 -5165925 - MER104 DNA Tc2 -9 171 1 294 328 59 25 chr13 96707629 96707867 -5165302 - L2 LINE L2 -1582 1732 1487 187 357 0 0 chr13 96709090 96709160 -5164009 + MIR SINE MIR 180 249 -13 1700 143 37 66 chr13 96710370 96710747 -5162422 + MLT2D LTR ERVL 1 366 -48 198 71 0 0 chr13 96710777 96710805 -5162364 + (TC)n Simple_repeat Simple_repeat 1 28 0 948 126 33 22 chr13 96710957 96711140 -5162029 + MER53 DNA DNA 5 189 0 1817 134 67 20 chr13 96711500 96711798 -5161371 - AluSx SINE Alu 0 312 1 287 335 11 62 chr13 96712201 96712377 -5160792 - MIR SINE MIR -83 179 13 523 250 37 98 chr13 96712719 96712878 -5160291 + MIR SINE MIR 5 145 -117 2230 118 0 10 chr13 96712878 96713191 -5159978 + AluSx SINE Alu 1 310 -2 523 250 37 98 chr13 96713191 96713275 -5159894 + MIR SINE MIR 145 233 -29 297 337 58 24 chr13 96713326 96713531 -5159638 - L2 LINE L2 -55 3258 3047 1543 200 74 18 chr13 96714644 96715095 -5158074 - MER39 LTR ERV1 -49 658 11 258 32 0 0 chr13 96715728 96715759 -5157410 + (TG)n Simple_repeat Simple_repeat 1 31 0 230 323 142 0 chr13 96716294 96716433 -5156736 - MIR SINE MIR -75 187 30 236 253 88 22 chr13 96717012 96717103 -5156066 - L2 LINE L2 -1 3271 3175 308 291 48 0 chr13 96718532 96718635 -5154534 - MIR3 SINE MIR -22 186 79 21 36 0 0 chr13 96718849 96718877 -5154292 + AT_rich Low_complexity Low_complexity 1 28 0 3025 161 102 11 chr13 96719427 96719566 -5153603 - LTR9 LTR ERV1 0 612 487 189 0 0 0 chr13 96719566 96719587 -5153582 + (GA)n Simple_repeat Simple_repeat 2 22 0 3025 161 102 11 chr13 96719587 96720007 -5153162 - LTR9 LTR ERV1 -125 487 2 640 226 31 41 chr13 96720491 96720686 -5152483 - LTR19C LTR ERV1 0 779 587 2633 83 60 21 chr13 96720687 96721118 -5152051 - LTR7 LTR ERV1 -2 448 1 2381 77 45 16 chr13 96721118 96721497 -5151672 - HERVH LTR ERV1 0 7713 7324 1261 138 18 9 chr13 96721497 96721715 -5151454 - HERVH LTR ERV1 -1894 5819 5600 3624 132 60 23 chr13 96721716 96722370 -5150799 - HERVH LTR ERV1 -2564 5149 4472 * 21876 84 62 71 chr13 96722355 96726284 -5146885 - HERVH LTR ERV1 -3818 3895 1 2474 95 63 21 chr13 96726286 96726716 -5146453 - LTR7 LTR ERV1 -2 448 1 567 285 21 86 chr13 96726735 96727156 -5146013 - LTR9 LTR ERV1 -212 400 7 1679 258 50 85 chr13 96727967 96728147 -5145022 - L1MC5 LINE L1 -143 7818 7633 2050 132 3 3 chr13 96728147 96728443 -5144726 + AluSg SINE Alu 1 296 -14 1679 258 50 85 chr13 96728443 96728459 -5144710 - L1MC5 LINE L1 -328 7633 7618 1902 168 3 3 chr13 96728459 96728751 -5144418 - AluSx SINE Alu -20 292 1 1679 258 50 85 chr13 96728751 96728883 -5144286 - L1MC5 LINE L1 -343 7618 7483 2472 77 0 0 chr13 96728883 96729182 -5143987 - AluY SINE Alu -12 299 1 1679 258 50 85 chr13 96729182 96729729 -5143440 - L1MC5 LINE L1 -478 7483 6994 2353 121 28 6 chr13 96729729 96730085 -5143084 + THE1B LTR MaLR 1 364 0 1679 258 50 85 chr13 96730085 96730443 -5142726 - L1MC5 LINE L1 -967 6994 6625 530 320 80 54 chr13 96730494 96730994 -5142175 - L1MC4a LINE L1 -1221 6587 6075 632 319 61 0 chr13 96731125 96731438 -5141731 - L1MC4a LINE L1 -1973 5835 5504 203 88 29 0 chr13 96732186 96732220 -5140949 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 210 300 40 80 chr13 96732236 96732336 -5140833 - L2 LINE L2 -15 3298 3203 204 279 49 0 chr13 96732447 96732508 -5140661 + L2 LINE L2 1784 1847 -1467 899 316 57 57 chr13 96732532 96733381 -5139788 + L1MEc LINE L1 36 884 -5512 240 307 100 81 chr13 96733382 96733575 -5139594 + L2 LINE L2 1898 2101 -1213 2312 100 0 3 chr13 96733575 96733876 -5139293 - AluY SINE Alu -11 300 1 240 307 100 81 chr13 96733876 96733991 -5139178 + L2 LINE L2 2101 2212 -1102 22 35 0 0 chr13 96734020 96734049 -5139120 + AT_rich Low_complexity Low_complexity 1 29 0 322 354 4 17 chr13 96734139 96734291 -5138878 - MIR SINE MIR -67 141 9 3210 80 9 2 chr13 96735255 96735704 -5137465 - L1PA13 LINE L1 -3 6160 5709 355 267 51 32 chr13 96736630 96736811 -5136358 - MIR SINE MIR -62 146 4 1918 129 75 0 chr13 96736833 96737111 -5136058 + AluSg SINE Alu 1 299 -11 384 319 30 30 chr13 96737262 96737431 -5135738 + MIR3 SINE MIR 36 204 -4 25 75 0 0 chr13 96737962 96738015 -5135154 + AT_rich Low_complexity Low_complexity 1 53 0 381 238 95 24 chr13 96738371 96738539 -5134630 - MLT1J2 LTR MaLR -270 180 1 937 234 72 35 chr13 96738853 96739311 -5133858 + L1MC5 LINE L1 7452 7926 -35 2023 108 35 14 chr13 96741094 96741382 -5131787 - AluSg SINE Alu -16 294 1 596 285 59 59 chr13 96741461 96741801 -5131368 + MLT2F LTR ERVL 324 663 0 279 280 11 0 chr13 96741946 96742039 -5131130 - L1ME LINE L1 -379 5787 5694 2825 244 24 20 chr13 96742219 96743124 -5130045 - L1ME1 LINE L1 -6 6229 5319 2016 163 52 8 chr13 96743124 96743510 -5129659 + MER57A LTR ERV1 1 403 0 2825 244 24 20 chr13 96743510 96743533 -5129636 - L1ME1 LINE L1 -916 5319 5298 4925 261 83 28 chr13 96743533 96745960 -5127209 - L1ME1 LINE L1 -3658 2557 35 261 203 0 54 chr13 96745962 96746036 -5127133 + MER69 DNA AcHobo 2423 2492 -34 306 273 0 13 chr13 96746511 96746588 -5126581 + GA-rich Low_complexity Low_complexity 5 80 0 215 241 0 0 chr13 96747487 96747541 -5125628 + T-rich Low_complexity Low_complexity 1 54 0 1925 151 15 59 chr13 96748966 96749356 -5123813 - THE1C LTR MaLR 0 375 3 1650 287 174 15 chr13 96751226 96752453 -5120716 - L1MC4a LINE L1 -907 6901 5437 1243 303 86 41 chr13 96753233 96754223 -5118946 - ERVL LTR ERVL -839 4925 3892 840 256 11 0 chr13 96754554 96754730 -5118439 - MER5B DNA MER1_type 0 178 1 2204 101 20 3 chr13 96754935 96755232 -5117937 - AluSq SINE Alu -11 302 1 23 0 0 0 chr13 96755303 96755326 -5117843 + AT_rich Low_complexity Low_complexity 1 23 0 1776 93 22 158 chr13 96756359 96756769 -5116400 - THE1A LTR MaLR -1 354 1 1543 203 51 0 chr13 96756769 96757101 -5116068 - MLT1A1 LTR MaLR -16 349 1 204 227 0 0 chr13 96757539 96757583 -5115586 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 194 271 219 0 chr13 96759853 96759949 -5113220 + MIR SINE MIR 80 196 -66 321 306 132 7 chr13 96760209 96760353 -5112816 - MIR3 SINE MIR -14 194 33 2172 129 0 0 chr13 96760562 96760872 -5112297 + AluSg SINE Alu 1 310 0 181 222 28 0 chr13 96760989 96761025 -5112144 - L3 LINE CR1 -1534 43 7 2154 143 97 8 chr13 96761502 96761895 -5111274 + MSTA LTR MaLR 1 428 0 9010 147 10 41 chr13 96761897 96763525 -5109644 + MSTA-int LTR MaLR 3 1580 0 2291 106 116 10 chr13 96763525 96763912 -5109257 + MSTA LTR MaLR 1 428 0 1102 202 99 124 chr13 96764159 96764673 -5108496 + MLT1F1 LTR MaLR 67 567 0 210 361 14 0 chr13 96765059 96765131 -5108038 + L2 LINE L2 2243 2315 -999 407 294 28 11 chr13 96765328 96765508 -5107661 + MLT1J1 LTR MaLR 1 183 -263 742 287 127 49 chr13 96765799 96766248 -5106921 - MLT1G1 LTR MaLR -32 510 36 685 171 9 0 chr13 96766248 96766359 -5106810 + AluSx SINE Alu 1 112 -201 3010 99 52 0 chr13 96766359 96766745 -5106424 + MLT2A1 LTR ERVL 1 412 -32 474 18 0 0 chr13 96766745 96766800 -5106369 + (TA)n Simple_repeat Simple_repeat 2 56 0 3010 99 52 0 chr13 96766800 96766835 -5106334 + MLT2A1 LTR ERVL 412 444 0 41893 75 5 3 chr13 96766835 96772476 -5100693 + HERVL-A1 LTR ERVL 1 5654 0 2810 87 3 3 chr13 96772477 96772867 -5100302 + MLT2A1 LTR ERVL 9 398 -46 184 111 44 0 chr13 96772867 96772912 -5100257 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 49 0 0 chr13 96773012 96773053 -5100116 + AT_rich Low_complexity Low_complexity 1 41 0 472 104 84 9 chr13 96773056 96773387 -5099782 + (TA)n Simple_repeat Simple_repeat 1 355 0 1861 118 0 0 chr13 96773414 96773685 -5099484 - MLT2A1 LTR ERVL -40 404 134 546 88 77 18 chr13 96773685 96774316 -5098853 + (TA)n Simple_repeat Simple_repeat 1 668 0 239 98 0 0 chr13 96774325 96774366 -5098803 + MLT2A1 LTR ERVL 363 403 -41 194 0 0 37 chr13 96774420 96774447 -5098722 + (TA)n Simple_repeat Simple_repeat 1 26 0 350 77 0 0 chr13 96774452 96774504 -5098665 + MLT2A1 LTR ERVL 393 444 0 1274 120 16 0 chr13 96774504 96774688 -5098481 + AluSx SINE Alu 107 293 -17 290 229 8 122 chr13 96774741 96774872 -5098297 + MIR SINE MIR 146 261 -1 25 31 0 0 chr13 96775301 96775333 -5097836 + AT_rich Low_complexity Low_complexity 1 32 0 1783 153 153 21 chr13 96776120 96776498 -5096671 + MSTA LTR MaLR 1 428 0 240 320 180 0 chr13 96777428 96777528 -5095641 - MER5A DNA MER1_type -69 120 3 350 272 78 26 chr13 96778063 96778254 -5094915 + MLT1J2 LTR MaLR 24 224 -226 21 0 0 0 chr13 96780749 96780770 -5092399 + AT_rich Low_complexity Low_complexity 1 21 0 1359 207 25 36 chr13 96781752 96782110 -5091059 + MLT1A1 LTR MaLR 1 354 -11 1872 239 51 31 chr13 96782504 96783049 -5090120 + MER74A LTR ERVL 3 558 0 282 29 0 0 chr13 96784170 96784205 -5088964 + (CA)n Simple_repeat Simple_repeat 1 35 0 521 260 155 30 chr13 96786279 96786479 -5086690 - MIR SINE MIR -13 249 25 353 59 0 0 chr13 96786520 96786574 -5086595 + L1P LINE L1 5319 5365 -786 331 351 13 33 chr13 96787667 96787818 -5085351 + L1ME LINE L1 1490 1637 -4759 3160 227 12 2 chr13 96787824 96788652 -5084517 - L1PB1 LINE L1 -835 5311 4476 3157 98 0 0 chr13 96788653 96789120 -5084049 + L1PB1 LINE L1 5320 5786 -365 283 220 20 50 chr13 96789124 96789224 -5083945 + (TATG)n Simple_repeat Simple_repeat 3 99 0 2498 96 16 0 chr13 96789224 96789588 -5083581 + L1PB1 LINE L1 5782 6151 0 234 140 41 55 chr13 96789589 96789662 -5083507 + L1MCa LINE L1 1738 1838 -4588 189 0 0 0 chr13 96789680 96789701 -5083468 + (T)n Simple_repeat Simple_repeat 1 21 0 339 314 95 33 chr13 96789802 96790108 -5083061 + L1MCa LINE L1 2097 2421 -4186 432 0 0 0 chr13 96791952 96792000 -5081169 + (TA)n Simple_repeat Simple_repeat 1 48 0 478 267 99 35 chr13 96792266 96792498 -5080671 + MIR SINE MIR 14 260 -2 296 271 123 49 chr13 96796733 96796855 -5076314 - MIR SINE MIR -87 175 45 327 49 0 0 chr13 96798049 96798090 -5075079 + (GA)n Simple_repeat Simple_repeat 1 41 0 272 208 28 38 chr13 96798320 96798426 -5074743 - MLT1J1 LTR MaLR -6 440 336 507 303 38 5 chr13 96798520 96798705 -5074464 - MLT1J1 LTR MaLR -254 192 2 758 262 115 80 chr13 96799517 96799944 -5073225 + L2 LINE L2 2870 3311 -2 2252 101 0 0 chr13 96799960 96800256 -5072913 - AluSq SINE Alu -17 296 1 252 277 38 13 chr13 96800863 96801022 -5072147 + L1M4 LINE L1 4908 5070 -1076 454 273 95 16 chr13 96801311 96801564 -5071605 + L1ME LINE L1 1630 1902 -4494 343 232 36 36 chr13 96801693 96801805 -5071364 + L1ME LINE L1 2068 2179 -4036 1872 172 34 54 chr13 96801816 96802075 -5071094 + MLT2A2 LTR ERVL 1 263 -291 2210 124 0 0 chr13 96802075 96802381 -5070788 - AluSp SINE Alu -7 306 1 1872 172 34 54 chr13 96802381 96802679 -5070490 + MLT2A2 LTR ERVL 263 554 0 457 196 118 20 chr13 96802683 96802836 -5070333 + L1ME LINE L1 2229 2396 -4000 450 222 12 37 chr13 96802828 96802990 -5070179 + L1MB7 LINE L1 6027 6184 0 * 2564 241 67 9 chr13 96802987 96803934 -5069235 + L1ME LINE L1 2341 3341 -2874 287 323 60 9 chr13 96804090 96804307 -5068862 + L1ME LINE L1 5484 5711 -520 264 30 0 0 chr13 96804550 96804583 -5068586 + (TG)n Simple_repeat Simple_repeat 2 34 0 852 154 31 0 chr13 96805022 96805152 -5068017 - AluJb SINE Alu -21 291 158 2033 111 16 33 chr13 96806123 96806429 -5066740 + AluSx SINE Alu 1 301 -11 1135 118 24 0 chr13 96806429 96806599 -5066570 + AluSg/x SINE Alu 132 305 -5 25 0 0 0 chr13 96806986 96807011 -5066158 + AT_rich Low_complexity Low_complexity 1 25 0 2254 101 10 0 chr13 96809075 96809393 -5063776 + AluSq SINE Alu 1 321 0 23 68 0 0 chr13 96810815 96810859 -5062310 + AT_rich Low_complexity Low_complexity 1 44 0 825 153 143 46 chr13 96812331 96812527 -5060642 - MER20 DNA MER1_type -4 215 1 1968 125 11 0 chr13 96813377 96813699 -5059470 + AluSx SINE Alu 1 325 0 192 321 51 82 chr13 96813818 96814133 -5059036 - L2 LINE L2 -36 3236 2932 216 0 0 0 chr13 96814591 96814615 -5058554 + (T)n Simple_repeat Simple_repeat 1 24 0 244 268 0 0 chr13 96815162 96815233 -5057936 - L1MC5 LINE L1 -195 7766 7696 2182 106 13 10 chr13 96816143 96816444 -5056725 + AluY SINE Alu 1 302 -9 2538 47 23 0 chr13 96817279 96817580 -5055589 - AluY SINE Alu -3 308 1 638 220 23 0 chr13 96818503 96818635 -5054534 - MIR SINE MIR -84 178 44 23 33 0 0 chr13 96820510 96820540 -5052629 + AT_rich Low_complexity Low_complexity 1 30 0 307 260 73 53 chr13 96820835 96820985 -5052184 - L1MC/D LINE L1 -894 5534 5382 699 272 25 57 chr13 96821358 96821920 -5051249 - L1MC/D LINE L1 -2529 3686 3143 1406 181 3 35 chr13 96821998 96822308 -5050861 + L1PB4 LINE L1 5833 6132 -24 228 207 30 89 chr13 96822346 96822448 -5050721 - L1MC/D LINE L1 -3171 3044 2950 2226 109 0 3 chr13 96822448 96822752 -5050417 - AluSx SINE Alu -9 303 1 228 207 30 89 chr13 96822752 96822784 -5050385 - L1MC/D LINE L1 -3265 2950 2918 323 322 21 64 chr13 96822977 96823213 -5049956 - L1MC/D LINE L1 -4174 2222 1997 381 238 84 52 chr13 96823674 96823887 -5049282 - L1ME1 LINE L1 -143 6023 5809 980 248 118 36 chr13 96823931 96824399 -5048770 + MLT1F LTR MaLR 37 542 0 677 274 5 0 chr13 96824401 96824587 -5048582 - L1ME1 LINE L1 -403 5763 5577 541 325 75 78 chr13 96824611 96825253 -5047916 - L1MC/D LINE L1 -4910 1295 656 24 0 0 0 chr13 96825815 96825839 -5047330 + AT_rich Low_complexity Low_complexity 1 24 0 448 175 30 0 chr13 96827573 96827739 -5045430 + GA-rich Low_complexity Low_complexity 1 171 0 350 278 97 28 chr13 96828445 96828589 -5044580 - L2 LINE L2 0 3313 3160 1758 131 44 24 chr13 96829084 96829381 -5043788 - AluSx SINE Alu -9 303 1 40 49 0 0 chr13 96829439 96829500 -5043669 + AT_rich Low_complexity Low_complexity 1 61 0 240 350 94 25 chr13 96829609 96829812 -5043357 - MIR SINE MIR 0 262 46 1062 188 9 32 chr13 96830976 96831194 -5041975 + MER20 DNA MER1_type 4 216 -3 244 330 20 50 chr13 96831198 96831398 -5041771 + L2 LINE L2 2699 2892 -422 436 298 111 38 chr13 96831402 96831691 -5041478 + L2 LINE L2 2995 3304 -9 229 208 0 0 chr13 96832292 96832345 -5040824 + MER69 DNA AcHobo 46 98 -2428 23 0 0 0 chr13 96832447 96832470 -5040699 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 96833924 96833951 -5039218 + (T)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr13 96836256 96836282 -5036887 + (T)n Simple_repeat Simple_repeat 1 26 0 222 235 0 0 chr13 96836626 96836677 -5036492 + A-rich Low_complexity Low_complexity 1 51 0 1936 124 32 0 chr13 96837426 96837708 -5035461 - AluSx SINE Alu -21 291 1 289 194 97 0 chr13 96837997 96838069 -5035100 - MER112 DNA MER1_type -31 229 151 227 271 169 42 chr13 96842664 96842782 -5030387 + L2 LINE L2 3137 3269 -3 22 35 0 0 chr13 96842933 96842962 -5030207 + AT_rich Low_complexity Low_complexity 1 29 0 40 0 0 0 chr13 96844266 96844306 -5028863 + AT_rich Low_complexity Low_complexity 1 40 0 1444 208 6 43 chr13 96844320 96844693 -5028476 - AluJb SINE Alu 0 361 1 651 271 113 9 chr13 96845851 96846072 -5027097 + MIR SINE MIR 2 245 -17 2113 117 38 0 chr13 96846880 96847171 -5025998 + AluSq SINE Alu 1 302 -11 3302 161 86 36 chr13 96848186 96848790 -5024379 - MER51A LTR ERV1 0 634 1 22 0 0 0 chr13 96849480 96849502 -5023667 + AT_rich Low_complexity Low_complexity 1 22 0 218 0 0 86 chr13 96850165 96850200 -5022969 + (CGGGGG)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr13 96850771 96850811 -5022358 + GC_rich Low_complexity Low_complexity 1 40 0 1843 195 42 44 chr13 96851270 96851680 -5021489 + LTR2 LTR ERV1 41 449 0 1015 113 0 0 chr13 96851942 96852075 -5021094 + AluSc SINE Alu 1 133 -176 2008 115 3 7 chr13 96852075 96852402 -5020767 + AluSx SINE Alu 1 326 0 30 27 0 0 chr13 96852754 96852791 -5020378 + AT_rich Low_complexity Low_complexity 1 37 0 208 359 13 13 chr13 96853024 96853102 -5020067 + MIR SINE MIR 1 78 -184 209 328 129 0 chr13 96853371 96853487 -5019682 + MIR SINE MIR 106 236 -26 404 232 83 85 chr13 96853779 96854308 -5018861 + MLT1G LTR MaLR 1 547 -8 189 0 0 0 chr13 96854350 96854371 -5018798 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 594 305 53 21 chr13 96854453 96854738 -5018431 + MLT1G-int LTR MaLR 285 578 -793 1966 141 3 7 chr13 96854805 96855096 -5018073 + AluSg SINE Alu 4 293 -17 386 85 17 0 chr13 96855096 96855155 -5018014 + (GGAA)n Simple_repeat Simple_repeat 1 60 0 817 236 6 12 chr13 96855534 96855695 -5017474 + FAM SINE Alu 5 164 -11 481 332 76 24 chr13 96856363 96856691 -5016478 + MLT1G LTR MaLR 52 396 -194 285 253 10 50 chr13 96856738 96856837 -5016332 + MLT1G LTR MaLR 496 590 0 235 308 167 13 chr13 96856952 96857108 -5016061 + MIR SINE MIR 72 251 -11 241 319 124 2 chr13 96857167 96857296 -5015873 + MER5A DNA MER1_type 4 136 -42 206 328 0 0 chr13 96858664 96858722 -5014447 - L2 LINE L2 0 3313 3256 201 265 61 30 chr13 96859077 96859209 -5013960 - MIR SINE MIR -110 152 17 312 123 123 31 chr13 96859487 96859552 -5013617 + MADE1 DNA Mariner 10 80 0 711 35 0 0 chr13 96859582 96859668 -5013501 + L1PA4 LINE L1 6067 6152 -3 618 222 199 0 chr13 96860211 96860382 -5012787 + MER3 DNA MER1_type 1 205 -4 236 246 16 0 chr13 96861124 96861185 -5011984 + L1MC4 LINE L1 6653 6714 -1328 973 167 26 53 chr13 96862051 96862123 -5011046 + L1MA8 LINE L1 6070 6142 -149 2440 97 0 0 chr13 96862123 96862434 -5010735 + AluSq SINE Alu 1 311 -2 973 167 26 53 chr13 96862434 96862588 -5010581 + L1MA8 LINE L1 6142 6290 -1 367 266 186 52 chr13 96862762 96863014 -5010155 + L2 LINE L2 3020 3305 -8 23 0 0 0 chr13 96863476 96863499 -5009670 + AT_rich Low_complexity Low_complexity 1 23 0 465 300 117 21 chr13 96866948 96867188 -5005981 + L3 LINE CR1 1306 1568 -9 26 30 0 0 chr13 96868183 96868216 -5004953 + AT_rich Low_complexity Low_complexity 1 33 0 2293 81 7 29 chr13 96868491 96868798 -5004371 - AluSq SINE Alu -13 300 1 233 305 0 32 chr13 96869053 96869148 -5004021 - MER5A DNA MER1_type -78 111 20 1335 214 7 4 chr13 96870132 96870408 -5002761 - AluJo SINE Alu -16 296 20 201 340 89 56 chr13 96872871 96873174 -4999995 - L2 LINE L2 -46 3226 2914 225 122 0 0 chr13 96873659 96873700 -4999469 + LTR66 LTR ERVL 395 435 -175 351 250 23 0 chr13 96873703 96873791 -4999378 - L1MC4 LINE L1 -1339 6703 6614 343 300 0 0 chr13 96873713 96873803 -4999366 + L1MC4 LINE L1 6614 6703 -1339 * 224 30 30 0 chr13 96875200 96875233 -4997936 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr13 96875924 96875952 -4997217 + (T)n Simple_repeat Simple_repeat 1 28 0 346 333 14 14 chr13 96876658 96876796 -4996373 - MIR3 SINE MIR -35 173 36 469 245 161 26 chr13 96876832 96876987 -4996182 - MER5A DNA MER1_type -7 182 7 369 168 11 21 chr13 96877818 96877913 -4995256 + CT-rich Low_complexity Low_complexity 2 95 0 611 174 17 17 chr13 96877919 96878034 -4995135 - L1MB1 LINE L1 -6 6162 6048 2071 103 43 0 chr13 96878440 96878721 -4994448 - AluSp SINE Alu -20 293 1 26 82 0 0 chr13 96878724 96878785 -4994384 + AT_rich Low_complexity Low_complexity 1 61 0 2436 78 0 0 chr13 96879209 96879504 -4993665 + AluY SINE Alu 1 295 -16 308 75 0 38 chr13 96880180 96880233 -4992936 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 193 385 55 0 chr13 96880235 96880344 -4992825 - L2 LINE L2 0 3272 3158 241 340 154 32 chr13 96881621 96881868 -4991301 + L2 LINE L2 2571 2847 -467 259 217 0 0 chr13 96881940 96881986 -4991183 + L2 LINE L2 3227 3272 0 306 253 12 12 chr13 96882091 96882174 -4990995 - MER106B DNA MER1_type -935 124 42 263 47 0 93 chr13 96882195 96882238 -4990931 + MER106A DNA MER1_type 195 233 -3 195 42 0 0 chr13 96882911 96882935 -4990234 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 332 275 63 0 chr13 96883123 96883265 -4989904 + L1ME4a LINE L1 5966 6116 -5 320 0 0 24 chr13 96883350 96883391 -4989778 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 188 298 71 24 chr13 96884167 96884251 -4988918 + MIR3 SINE MIR 85 172 -36 28 29 0 0 chr13 96885579 96885614 -4987555 + AT_rich Low_complexity Low_complexity 1 35 0 2139 132 0 3 chr13 96885703 96886006 -4987163 - AluSq SINE Alu -11 302 1 336 323 36 61 chr13 96886109 96886388 -4986781 - L2 LINE L2 -26 3287 3016 234 300 0 0 chr13 96886629 96886689 -4986480 + CT-rich Low_complexity Low_complexity 4 63 0 21 36 0 0 chr13 96887283 96887311 -4985858 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 96888029 96888050 -4985119 + AT_rich Low_complexity Low_complexity 1 21 0 341 134 0 30 chr13 96888669 96888736 -4984433 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 214 200 0 0 chr13 96889088 96889128 -4984041 + A-rich Low_complexity Low_complexity 1 40 0 1509 224 35 49 chr13 96891563 96891734 -4981435 + MLT1A1 LTR MaLR 1 173 -192 9630 111 12 2 chr13 96891734 96893008 -4980161 + HSMAR1 DNA Mariner 1 1287 0 1509 224 35 49 chr13 96893008 96893206 -4979963 + MLT1A1 LTR MaLR 173 365 0 25 31 0 0 chr13 96893649 96893681 -4979488 + AT_rich Low_complexity Low_complexity 1 32 0 2147 104 4 0 chr13 96893868 96894147 -4979022 - AluSq SINE Alu -33 280 1 278 326 22 11 chr13 96894246 96894335 -4978834 + MIR SINE MIR 20 109 -99 958 231 165 17 chr13 96894715 96895122 -4978047 + MLT1C LTR MaLR 1 467 0 278 211 28 28 chr13 96895130 96895201 -4977968 - MIR SINE MIR -187 75 5 815 271 180 39 chr13 96896142 96896269 -4976900 - L2 LINE L2 -2 3311 3203 3171 61 69 3 chr13 96896269 96896661 -4976508 + L1PA7 LINE L1 5729 6146 -8 815 271 180 39 chr13 96896661 96896684 -4976485 - L2 LINE L2 -110 3203 3185 1540 203 14 7 chr13 96896684 96896975 -4976194 + AluJo SINE Alu 1 293 -19 815 271 180 39 chr13 96896975 96897621 -4975548 - L2 LINE L2 -128 3185 2381 3245 75 29 0 chr13 96898458 96898872 -4974297 - L1PA14 LINE L1 -2 6159 5734 243 329 14 0 chr13 96899740 96899813 -4973356 - L2 LINE L2 -1557 1757 1684 2178 103 0 13 chr13 96901680 96902021 -4971148 + AluSx SINE Alu 1 312 0 2219 104 3 0 chr13 96903542 96903831 -4969338 - AluSq SINE Alu -23 290 1 250 349 95 32 chr13 96905337 96905675 -4967494 + L2 LINE L2 1977 2335 -979 29 60 0 0 chr13 96906496 96906546 -4966623 + AT_rich Low_complexity Low_complexity 1 50 0 2388 87 3 3 chr13 96907781 96908091 -4965078 - AluSq SINE Alu 0 313 4 293 345 26 61 chr13 96908153 96908382 -4964787 + L2 LINE L2 2167 2387 -927 1736 118 0 0 chr13 96908414 96908642 -4964527 - AluSx SINE Alu -84 228 1 184 368 44 18 chr13 96908642 96908756 -4964413 + L2 LINE L2 2381 2497 -817 617 257 37 19 chr13 96908876 96909090 -4964079 + MER20 DNA MER1_type 2 219 0 842 201 126 0 chr13 96909107 96909306 -4963863 - MER58A DNA MER1_type 0 224 1 212 234 31 0 chr13 96910087 96910151 -4963018 + (TA)n Simple_repeat Simple_repeat 2 67 0 2327 113 0 3 chr13 96911020 96911331 -4961838 + AluSg SINE Alu 1 310 0 186 103 0 0 chr13 96911410 96911439 -4961730 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1929 150 56 0 chr13 96911439 96911778 -4961391 - L1PA16 LINE L1 -14 6152 5795 3062 279 81 13 chr13 96911848 96912749 -4960420 + L1ME2 LINE L1 35 1079 -5317 1653 158 24 50 chr13 96912749 96913047 -4960122 - AluSx SINE Alu -22 290 1 3062 279 81 13 chr13 96913047 96913642 -4959527 + L1ME2 LINE L1 1079 1632 -4764 862 240 5 14 chr13 96913648 96913865 -4959304 + L1MC1 LINE L1 6101 6315 -18 1861 138 0 86 chr13 96913875 96914200 -4958969 + AluSx SINE Alu 1 297 -15 836 247 170 34 chr13 96914798 96915352 -4957817 + L1ME2 LINE L1 3064 3692 -2523 * 1102 231 202 13 chr13 96915333 96915521 -4957648 + L1ME2 LINE L1 5262 5413 -820 2163 106 48 0 chr13 96915521 96915813 -4957356 + AluSg SINE Alu 1 306 -4 1102 231 202 13 chr13 96915813 96916272 -4956897 + L1ME2 LINE L1 5413 6027 -206 716 165 118 34 chr13 96916276 96916546 -4956623 + THE1C LTR MaLR 1 292 -136 240 121 106 30 chr13 96916567 96916633 -4956536 + THE1C LTR MaLR 116 186 -189 * 1077 175 60 20 chr13 96916628 96916879 -4956290 + THE1C LTR MaLR 115 375 0 2028 116 0 36 chr13 96917785 96918087 -4955082 + AluSg SINE Alu 1 291 -19 212 260 0 0 chr13 96918241 96918291 -4954878 + L2 LINE L2 3263 3312 -1 306 67 0 0 chr13 96918576 96918621 -4954548 + (TG)n Simple_repeat Simple_repeat 2 46 0 265 274 284 0 chr13 96920820 96920922 -4952247 - L2 LINE L2 -5 3267 3137 440 267 8 8 chr13 96920982 96921113 -4952056 - MER94 DNA DNA 0 134 4 1070 173 55 128 chr13 96921337 96921758 -4951411 + MLT1B LTR MaLR 1 390 0 2255 106 3 3 chr13 96922305 96922606 -4950563 + AluSq SINE Alu 1 301 -12 511 298 65 6 chr13 96923752 96923920 -4949249 + MIR SINE MIR 79 256 -6 215 196 39 0 chr13 96924166 96924217 -4948952 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 642 260 46 0 chr13 96924378 96924574 -4948595 + MER58A DNA MER1_type 20 224 0 395 291 73 34 chr13 96925901 96926313 -4946856 + MLT1H LTR MaLR 114 536 -6 236 164 98 0 chr13 96926653 96926714 -4946455 + MLT1I LTR MaLR 315 381 -28 693 185 24 22 chr13 96926922 96927136 -4946033 - MER58 DNA MER1_type 0 2420 1 699 157 0 0 chr13 96927505 96927620 -4945549 - MLT1A2 LTR MaLR 0 374 260 226 254 0 0 chr13 96927646 96927705 -4945464 - MLT1A2 LTR MaLR -265 125 67 6187 167 43 3 chr13 96929361 96930534 -4942635 + Tigger1 DNA MER2_type 20 1240 -1178 5763 56 10 0 chr13 96930544 96931271 -4941898 - L1PA8 LINE L1 -13 6159 5426 2389 106 11 0 chr13 96931272 96931651 -4941518 + L1P LINE L1 4990 5372 -774 6336 150 48 2 chr13 96931651 96932807 -4940362 + Tigger1 DNA MER2_type 1210 2418 0 252 292 204 0 chr13 96932810 96932923 -4940246 - MER5A DNA MER1_type -1 188 53 797 226 27 11 chr13 96933022 96933208 -4939961 + MER5A DNA MER1_type 1 189 0 186 363 20 20 chr13 96933347 96933449 -4939720 - MER5A DNA MER1_type -29 160 59 423 268 44 97 chr13 96934077 96934305 -4938864 - L3 LINE CR1 -546 1031 816 758 218 79 42 chr13 96935009 96935225 -4937944 - MER58A DNA MER1_type 0 224 1 258 32 0 0 chr13 96935920 96935951 -4937218 + (TG)n Simple_repeat Simple_repeat 2 32 0 471 192 19 26 chr13 96936158 96936314 -4936855 + GA-rich Low_complexity Low_complexity 3 157 0 207 0 0 0 chr13 96939410 96939433 -4933736 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 223 348 52 26 chr13 96939680 96939795 -4933374 + MIR SINE MIR 110 227 -35 3048 223 103 23 chr13 96939968 96941212 -4931957 + L1MC4 LINE L1 6493 7714 -94 441 0 0 0 chr13 96941216 96941265 -4931904 + (CA)n Simple_repeat Simple_repeat 2 50 0 249 171 24 61 chr13 96941270 96941352 -4931817 + GA-rich Low_complexity Low_complexity 2 80 0 226 282 64 0 chr13 96941353 96941431 -4931738 + L1MC4 LINE L1 7960 8042 0 25 51 0 0 chr13 96941598 96941637 -4931532 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr13 96942208 96942228 -4930941 + (T)n Simple_repeat Simple_repeat 1 20 0 913 240 35 5 chr13 96942579 96942779 -4930390 + MER58A DNA MER1_type 4 209 -15 351 0 0 0 chr13 96942990 96943029 -4930140 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 255 10 31 chr13 96943567 96943665 -4929504 + (TA)n Simple_repeat Simple_repeat 1 96 0 526 226 193 0 chr13 96945801 96945982 -4927187 + MER20 DNA MER1_type 1 216 -3 271 312 88 0 chr13 96946070 96946195 -4926974 + MIR SINE MIR 79 214 -48 1861 122 0 0 chr13 96946195 96946440 -4926729 + AluSg SINE Alu 1 245 -65 192 354 44 39 chr13 96947131 96947312 -4925857 + L2 LINE L2 1218 1399 -1915 213 121 0 0 chr13 96947760 96947793 -4925376 + (CA)n Simple_repeat Simple_repeat 2 34 0 220 316 0 13 chr13 96947930 96948006 -4925163 + L2 LINE L2 3235 3309 -4 204 40 0 0 chr13 96948657 96948682 -4924487 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2168 113 3 13 chr13 96949019 96949321 -4923848 + AluSx SINE Alu 1 299 -13 1103 185 46 0 chr13 96949408 96949624 -4923545 - L1MD1 LINE L1 -8 6234 6009 6107 240 63 31 chr13 96949625 96950766 -4922403 - L1M4 LINE L1 -1287 4859 3756 279 0 0 0 chr13 96950766 96950797 -4922372 + (TC)n Simple_repeat Simple_repeat 2 32 0 231 36 0 0 chr13 96950796 96950824 -4922345 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 6107 240 63 31 chr13 96950797 96951934 -4921235 - L1M4 LINE L1 -2390 3756 2536 885 276 88 48 chr13 96951937 96952289 -4920880 - L1MDa LINE L1 -5531 1009 644 23 97 0 0 chr13 96952384 96952456 -4920713 + AT_rich Low_complexity Low_complexity 1 72 0 2059 176 90 29 chr13 96952518 96953008 -4920161 - MLT2B1 LTR ERVL 0 520 1 228 185 0 0 chr13 96953457 96953511 -4919658 + CT-rich Low_complexity Low_complexity 2 55 0 402 335 21 32 chr13 96955169 96955357 -4917812 + MER5A DNA MER1_type 2 187 -2 2071 145 0 0 chr13 96955492 96955781 -4917388 - AluSx SINE Alu -23 289 1 185 239 195 18 chr13 96956207 96956320 -4916849 + MIR3 SINE MIR 75 207 -1 2135 122 43 25 chr13 96956561 96956929 -4916240 - THE1C LTR MaLR 0 375 1 423 309 110 44 chr13 96957124 96957606 -4915563 + LTR33A LTR ERVL 2 515 -8 1846 141 11 0 chr13 96959821 96960097 -4913072 + AluSq SINE Alu 31 309 -4 1950 91 46 4 chr13 96961817 96962080 -4911089 + AluSq SINE Alu 40 313 0 208 219 10 31 chr13 96962869 96962965 -4910204 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 185 299 95 27 chr13 96963470 96963617 -4909552 - MIR SINE MIR -73 189 33 1342 179 144 61 chr13 96963776 96964205 -4908964 + MLT1C LTR MaLR 1 465 -2 192 314 139 0 chr13 96964406 96964492 -4908677 - L2 LINE L2 -247 3025 2928 613 258 93 57 chr13 96964610 96965038 -4908131 - MLT1D LTR MaLR -5 462 1 26 50 0 0 chr13 96967048 96967088 -4906081 + AT_rich Low_complexity Low_complexity 1 40 0 458 198 41 3 chr13 96967091 96967412 -4905757 + (TA)n Simple_repeat Simple_repeat 1 333 0 324 300 0 0 chr13 96967414 96967504 -4905665 + L1MC4 LINE L1 6613 6702 -1340 * 370 301 0 0 chr13 96967481 96967574 -4905595 - L1MC4 LINE L1 -1339 6703 6611 637 167 26 0 chr13 96967592 96967946 -4905223 + (TA)n Simple_repeat Simple_repeat 1 363 0 309 214 0 78 chr13 96967960 96968063 -4905106 + L1MC4 LINE L1 6611 6705 -1337 307 162 27 18 chr13 96968065 96968176 -4904993 + (TA)n Simple_repeat Simple_repeat 2 113 0 303 227 21 52 chr13 96968182 96968279 -4904890 + L1MC4 LINE L1 6612 6705 -1337 194 156 22 0 chr13 96968286 96968331 -4904838 + (TA)n Simple_repeat Simple_repeat 1 46 0 304 265 0 41 chr13 96968331 96968429 -4904740 + L1MC4 LINE L1 6612 6705 -1337 350 159 56 0 chr13 96968435 96968561 -4904608 + (TA)n Simple_repeat Simple_repeat 2 134 0 308 275 11 11 chr13 96968561 96968652 -4904517 - L1MC4 LINE L1 -1339 6703 6613 * 330 233 33 11 chr13 96968633 96968723 -4904446 + L1MC4 LINE L1 6614 6705 -1337 224 77 26 0 chr13 96968724 96968763 -4904406 + (TA)n Simple_repeat Simple_repeat 1 40 0 305 252 23 84 chr13 96968765 96968896 -4904273 + L1MC4 LINE L1 6580 6702 -1340 229 234 47 16 chr13 96971413 96971477 -4901692 + L2 LINE L2 3247 3312 -1 1621 181 6 32 chr13 96971694 96972009 -4901160 + AluJb SINE Alu 1 307 -5 36789 78 33 8 chr13 96972019 96978010 -4895159 + L1PA6 LINE L1 11 6154 0 225 154 0 0 chr13 96978168 96978207 -4894962 + (TA)n Simple_repeat Simple_repeat 1 39 0 1383 80 5 0 chr13 96978320 96978508 -4894661 - Charlie3 DNA MER1_type -9 2701 2513 * 1463 153 63 8 chr13 96978503 96978757 -4894412 - Charlie3 DNA MER1_type -2442 268 1 2273 99 0 16 chr13 96979161 96979514 -4893655 + AluSc SINE Alu 1 348 0 219 25 75 0 chr13 96979997 96980037 -4893132 + (TA)n Simple_repeat Simple_repeat 2 44 0 212 294 56 0 chr13 96982111 96982254 -4890915 + (TATAG)n Simple_repeat Simple_repeat 4 154 0 266 299 54 0 chr13 96982271 96982438 -4890731 + (CAGTA)n Simple_repeat Simple_repeat 5 180 0 254 293 54 0 chr13 96982475 96982692 -4890477 + (TATAG)n Simple_repeat Simple_repeat 1 228 0 1200 258 41 104 chr13 96983178 96983386 -4889783 + L2 LINE L2 1604 1824 -1490 432 0 0 0 chr13 96983386 96983434 -4889735 + (CA)n Simple_repeat Simple_repeat 2 49 0 1200 258 41 104 chr13 96983434 96983560 -4889609 + L2 LINE L2 1824 1956 -1358 2498 65 0 0 chr13 96983560 96983867 -4889302 - AluY SINE Alu -4 307 1 1200 258 41 104 chr13 96983867 96984194 -4888975 + L2 LINE L2 1956 2224 -1090 2261 123 0 0 chr13 96984434 96984743 -4888426 + AluSx SINE Alu 1 309 -3 24 53 0 0 chr13 96986449 96986487 -4886682 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr13 96987650 96987678 -4885491 + AT_rich Low_complexity Low_complexity 1 28 0 610 229 65 18 chr13 96988758 96988928 -4884241 - MER5B DNA MER1_type 0 178 1 216 350 0 0 chr13 96989716 96989819 -4883350 + T-rich Low_complexity Low_complexity 1 103 0 29 60 0 0 chr13 96989857 96989907 -4883262 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr13 96990180 96990201 -4882968 + AT_rich Low_complexity Low_complexity 1 21 0 964 290 101 43 chr13 96991924 96992438 -4880731 + MLT1G LTR MaLR 47 590 0 259 224 30 30 chr13 96992584 96992651 -4880518 + L2 LINE L2 3247 3313 0 2237 100 3 0 chr13 96993116 96993417 -4879752 - AluSq SINE Alu -11 302 1 438 20 0 0 chr13 96993514 96993565 -4879604 + (TTTCC)n Simple_repeat Simple_repeat 5 55 0 597 94 0 0 chr13 96993569 96993654 -4879515 + (TC)n Simple_repeat Simple_repeat 1 85 0 1729 185 10 10 chr13 96993654 96993962 -4879207 - AluJb SINE Alu -1 311 4 523 261 78 67 chr13 96994232 96994722 -4878447 - L1MC5 LINE L1 -53 7908 7414 2440 18 4 0 chr13 96994807 96995087 -4878082 - L1PA4 LINE L1 -429 5726 5446 3736 34 0 0 chr13 96995087 96995533 -4877636 + L1PA4 LINE L1 5707 6153 -2 1496 203 79 6 chr13 96995567 96995907 -4877262 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr13 96996618 96996639 -4876530 + AT_rich Low_complexity Low_complexity 1 21 0 671 154 0 8 chr13 96998834 96998957 -4874212 - L1P LINE L1 -850 5296 5175 418 149 53 11 chr13 96998957 96999051 -4874118 + L1PA15 LINE L1 6067 6164 -1 346 250 148 9 chr13 97000673 97000781 -4872388 + HAL1b LINE L1 1162 1284 -64 338 42 21 0 chr13 97000790 97000838 -4872331 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 342 107 46 chr13 97000884 97001080 -4872089 + MIR SINE MIR 27 234 -28 429 292 59 14 chr13 97001177 97001396 -4871773 + L1ME LINE L1 5510 5738 -383 302 311 44 30 chr13 97003975 97004110 -4869059 - MIR SINE MIR -116 146 10 2318 102 3 3 chr13 97004327 97004632 -4868537 - AluSp SINE Alu -6 307 3 2710 98 0 6 chr13 97004717 97005083 -4868086 + THE1B LTR MaLR 1 364 0 193 372 16 25 chr13 97008232 97008353 -4864816 - MIR SINE MIR -108 154 35 680 299 16 19 chr13 97008600 97008911 -4864258 - L1MA9 LINE L1 -30 6282 5973 263 272 37 0 chr13 97009199 97009280 -4863889 - MLT1H LTR MaLR -23 526 443 565 203 148 0 chr13 97009366 97009494 -4863675 - MLT1H LTR MaLR -261 288 142 540 60 81 16 chr13 97059504 97059755 -4813414 + (TA)n Simple_repeat Simple_repeat 1 267 0 1747 256 65 65 chr13 97059794 97060255 -4812914 - MER97c DNA MER1_type? -364 726 266 1526 203 73 33 chr13 97060255 97060704 -4812465 - MLT1C LTR MaLR 0 467 1 1747 256 65 65 chr13 97060704 97060805 -4812364 - MER97c DNA MER1_type? -824 266 166 351 0 0 0 chr13 97060805 97060844 -4812325 + (TG)n Simple_repeat Simple_repeat 2 40 0 1747 256 65 65 chr13 97060844 97061006 -4812163 - MER97c DNA MER1_type? -923 167 1 682 251 59 11 chr13 97061588 97061775 -4811394 - MER58A DNA MER1_type -28 196 1 262 291 91 61 chr13 97062087 97062252 -4810917 - MER112 DNA MER1_type 0 260 91 180 0 0 0 chr13 97062536 97062556 -4810613 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2152 101 0 0 chr13 97062584 97062851 -4810318 - AluSx SINE Alu -45 267 1 2294 86 3 26 chr13 97063405 97063718 -4809451 - AluY SINE Alu -5 306 1 453 288 93 61 chr13 97066084 97066377 -4806792 + L2 LINE L2 2922 3231 -82 1390 201 19 60 chr13 97066377 97066565 -4806604 - AluJb SINE Alu -5 307 136 2115 109 25 0 chr13 97066565 97066848 -4806321 - AluSq SINE Alu -23 290 1 1390 201 19 60 chr13 97066848 97066978 -4806191 - AluJb SINE Alu -176 136 2 453 288 93 61 chr13 97066978 97067062 -4806107 + L2 LINE L2 3231 3311 -2 242 260 0 0 chr13 97068302 97068352 -4804817 + polypyrimidine Low_complexity Low_complexity 2 51 0 183 198 151 87 chr13 97070521 97070647 -4802522 - L2 LINE L2 -190 3082 2949 1941 141 3 3 chr13 97072134 97072417 -4800752 + AluSq SINE Alu 1 283 -30 198 0 0 0 chr13 97073635 97073657 -4799512 + (T)n Simple_repeat Simple_repeat 1 22 0 398 287 89 50 chr13 97074024 97074327 -4798842 - L2 LINE L2 0 3313 2999 356 59 20 0 chr13 97074585 97074636 -4798533 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 26 0 0 0 chr13 97074777 97074803 -4798366 + AT_rich Low_complexity Low_complexity 1 26 0 1653 199 42 142 chr13 97074951 97075721 -4797448 - L1MD2 LINE L1 -8 6351 5659 1445 203 119 47 chr13 97076033 97076334 -4796835 + MLT1C LTR MaLR 7 350 -117 1844 167 0 0 chr13 97076334 97076621 -4796548 - AluJo SINE Alu -13 299 13 1445 203 119 47 chr13 97076621 97076747 -4796422 + MLT1C LTR MaLR 350 465 -2 2196 118 0 16 chr13 97077085 97077390 -4795779 - AluSx SINE Alu -12 300 1 424 316 45 11 chr13 97077423 97077606 -4795563 + MLT1J LTR MaLR 1 152 -298 227 353 53 20 chr13 97077900 97078144 -4795025 + L2 LINE L2 2065 2316 -998 742 209 23 56 chr13 97078665 97078880 -4794289 - MIR SINE MIR -6 256 49 23 33 0 0 chr13 97078941 97078971 -4794198 + AT_rich Low_complexity Low_complexity 1 30 0 218 302 101 22 chr13 97079398 97079537 -4793632 + MIR SINE MIR 112 261 -1 1617 127 107 51 chr13 97079547 97079902 -4793267 - THE1C LTR MaLR 0 375 1 226 310 170 10 chr13 97080387 97080487 -4792682 - L2 LINE L2 -36 3236 3121 222 91 0 0 chr13 97080989 97081022 -4792147 + (CCAA)n Simple_repeat Simple_repeat 2 34 0 1778 191 49 18 chr13 97082175 97082563 -4790606 - L1MB7 LINE L1 -23 6161 5762 2252 100 7 0 chr13 97083137 97083446 -4789723 + AluSx SINE Alu 2 312 0 387 0 0 0 chr13 97084052 97084095 -4789074 + (T)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr13 97085313 97085335 -4787834 + AT_rich Low_complexity Low_complexity 1 22 0 187 265 0 0 chr13 97088153 97088202 -4784967 + L2 LINE L2 3224 3272 0 237 308 0 44 chr13 97088984 97089075 -4784094 + MIR SINE MIR 73 159 -103 7649 24 1 0 chr13 97089138 97090018 -4783151 - L1PA4 LINE L1 -3 6152 5272 1935 280 61 9 chr13 97090637 97091272 -4781897 - L1MC4 LINE L1 -137 7905 7238 408 316 227 16 chr13 97091269 97091592 -4781577 - L1MD3 LINE L1 -934 7061 6808 * 351 0 0 0 chr13 97091592 97091631 -4781538 + (CA)n Simple_repeat Simple_repeat 2 40 0 408 316 227 16 chr13 97091631 97091760 -4781409 - L1MD3 LINE L1 -1187 6808 6513 4404 190 28 24 chr13 97092796 97093038 -4780131 - L1MA9 LINE L1 -312 6000 5761 1980 138 0 7 chr13 97093038 97093343 -4779826 - L1PB1 LINE L1 -3 6148 5846 4404 190 28 24 chr13 97093343 97094751 -4778418 - L1MA9 LINE L1 -551 5761 4339 311 263 146 41 chr13 97094885 97095201 -4777968 - L1ME4a LINE L1 -16 6105 5757 1601 191 112 33 chr13 97095250 97095642 -4777527 + MSTC LTR MaLR 6 428 0 188 196 0 18 chr13 97095690 97095746 -4777423 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 23 33 0 0 chr13 97096427 97096457 -4776712 + AT_rich Low_complexity Low_complexity 1 30 0 325 297 144 26 chr13 97097762 97097957 -4775212 - MIR SINE MIR -30 232 15 623 166 17 22 chr13 97098732 97098913 -4774256 + (CA)n Simple_repeat Simple_repeat 1 180 0 567 160 22 28 chr13 97098932 97099113 -4774056 + (CA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr13 97099780 97099812 -4773357 + AT_rich Low_complexity Low_complexity 1 32 0 1590 163 0 0 chr13 97100337 97100582 -4772587 + AluSp SINE Alu 1 245 -68 825 138 0 0 chr13 97100583 97100713 -4772456 + AluSg/x SINE Alu 176 305 -7 489 283 83 15 chr13 97100806 97101011 -4772158 + MIR SINE MIR 12 230 -32 212 281 52 10 chr13 97101458 97101554 -4771615 - MIR3 SINE MIR -5 203 104 2452 120 69 8 chr13 97102162 97102537 -4770632 - L1PA14 LINE L1 -2 6159 5762 1340 109 0 5 chr13 97102537 97102721 -4770448 + L1PA14 LINE L1 5596 5778 -383 659 222 198 0 chr13 97103188 97103395 -4769774 - L1MD3 LINE L1 -18 7977 7730 2004 151 10 0 chr13 97103498 97103802 -4769367 + AluSq SINE Alu 1 307 -6 778 221 13 0 chr13 97103810 97103964 -4769205 - MER58A DNA MER1_type -37 187 32 588 171 17 34 chr13 97104466 97104583 -4768586 - L1MC1 LINE L1 0 6333 6219 901 215 18 40 chr13 97104583 97104811 -4768358 + MLT2D LTR ERVL 2 224 -190 3176 98 5 16 chr13 97104900 97105327 -4767842 + L1PA11 LINE L1 5749 6170 -4 1439 182 36 21 chr13 97105349 97105684 -4767485 - L1M4 LINE L1 -830 5316 4977 507 164 9 17 chr13 97105703 97105819 -4767350 + CT-rich Low_complexity Low_complexity 2 116 0 859 256 47 20 chr13 97105865 97106166 -4767003 - L1M4 LINE L1 -1198 4948 4640 259 237 0 79 chr13 97107249 97107325 -4765844 + MER58A DNA MER1_type 153 222 -2 22 35 0 0 chr13 97108906 97108935 -4764234 + AT_rich Low_complexity Low_complexity 1 29 0 1609 162 11 8 chr13 97108935 97109201 -4763968 - AluJb SINE Alu -45 267 1 267 295 67 48 chr13 97109529 97109634 -4763535 + L2 LINE L2 3207 3313 0 4638 72 0 5 chr13 97109766 97110337 -4762832 + L1PA7 LINE L1 5587 6154 0 255 257 29 29 chr13 97110399 97110469 -4762700 - L2 LINE L2 0 3313 3244 27 29 0 0 chr13 97111493 97111527 -4761642 + AT_rich Low_complexity Low_complexity 1 34 0 991 238 44 4 chr13 97111942 97112169 -4761000 + MER106A DNA MER1_type 1 236 0 273 293 60 90 chr13 97112474 97112641 -4760528 - L2 LINE L2 -233 3080 2919 1008 251 139 10 chr13 97112713 97113115 -4760054 + MLT1C LTR MaLR 6 459 -8 315 350 67 33 chr13 97113153 97113393 -4759776 - L2 LINE L2 -510 2804 2557 374 343 25 15 chr13 97113555 97113753 -4759416 - L2 LINE L2 -810 2504 2305 2184 76 0 38 chr13 97113981 97114270 -4758899 + AluSx SINE Alu 5 282 -30 180 0 0 0 chr13 97114273 97114293 -4758876 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2927 112 0 3 chr13 97114858 97115234 -4757935 - THE1C LTR MaLR 0 375 1 2877 168 17 6 chr13 97119946 97120428 -4752741 + LTR45B LTR ERV1 3 489 0 1973 92 51 24 chr13 97120929 97121223 -4751946 - AluSx SINE Alu 0 312 11 1045 148 54 72 chr13 97121268 97121491 -4751678 - MER20 DNA MER1_type 0 219 1 2708 113 19 8 chr13 97121560 97121931 -4751238 + THE1C LTR MaLR 1 375 0 2099 191 45 2 chr13 97121949 97121968 -4751201 + L1MB3 LINE L1 5760 5777 -406 369 0 0 0 chr13 97121968 97122009 -4751160 + (CA)n Simple_repeat Simple_repeat 2 42 0 2099 191 45 2 chr13 97122009 97122388 -4750781 + L1MB3 LINE L1 5777 6175 -8 1543 192 66 39 chr13 97122565 97122929 -4750240 - MLT1B LTR MaLR -16 374 1 1417 170 8 12 chr13 97123076 97123329 -4749840 + AluJb SINE Alu 55 306 -6 2396 119 122 10 chr13 97124693 97125078 -4748091 - MSTA LTR MaLR 0 428 1 214 323 77 23 chr13 97125929 97126059 -4747110 - L2 LINE L2 -210 3062 2926 316 325 139 24 chr13 97126146 97126355 -4746814 - L2 LINE L2 -448 2866 2634 326 325 75 48 chr13 97126981 97127233 -4745936 - L2 LINE L2 -33 3239 2981 193 290 142 37 chr13 97127844 97128006 -4745163 + L2 LINE L2 2945 3123 -149 630 269 154 104 chr13 97128115 97128343 -4744826 + MLT1J LTR MaLR 12 227 -284 1536 140 63 33 chr13 97128343 97128614 -4744555 + AluJo SINE Alu 9 287 -25 630 269 154 104 chr13 97128614 97128858 -4744311 + MLT1J LTR MaLR 227 508 -3 261 264 74 74 chr13 97128864 97129012 -4744157 + L2 LINE L2 3112 3259 -13 368 315 107 9 chr13 97130081 97130274 -4742895 + MIR3 SINE MIR 2 212 -50 1598 213 34 48 chr13 97130620 97130840 -4742329 - MLT1C LTR MaLR -3 464 251 2073 111 8 119 chr13 97130840 97131219 -4741950 - MER1B DNA MER1_type 0 337 1 1598 213 34 48 chr13 97131219 97131415 -4741754 - MLT1C LTR MaLR -216 251 54 216 0 0 0 chr13 97131462 97131486 -4741683 + (T)n Simple_repeat Simple_repeat 1 24 0 271 313 62 28 chr13 97131671 97131847 -4741322 - L1ME LINE L1 -5888 182 1 344 256 31 90 chr13 97133163 97133288 -4739881 - MER113 DNA MER1_type? -308 213 82 1920 125 20 7 chr13 97133288 97133584 -4739585 + AluY SINE Alu 1 300 -11 344 256 31 90 chr13 97133584 97133595 -4739574 - MER113 DNA MER1_type? -439 82 72 2268 125 0 0 chr13 97133595 97133906 -4739263 + AluSq SINE Alu 1 311 -2 344 256 31 90 chr13 97133906 97133991 -4739178 - MER113 DNA MER1_type? -449 72 4 2804 85 16 14 chr13 97134491 97134854 -4738315 + THE1B LTR MaLR 1 364 0 403 259 89 45 chr13 97136161 97136474 -4736695 - L1ME4a LINE L1 -4 6117 5791 935 178 0 18 chr13 97136615 97136784 -4736385 - FRAM SINE Alu -10 166 1 380 258 50 40 chr13 97136908 97137106 -4736063 + L1ME3A LINE L1 88 287 -5918 326 295 54 22 chr13 97137356 97137580 -4735589 + L1ME3A LINE L1 1544 1774 -4622 15679 138 41 19 chr13 97137603 97137964 -4735205 + Tigger4(Zombi) DNA MER2_type 71 423 -2308 2539 70 3 3 chr13 97137964 97138276 -4734893 + L1PA8 LINE L1 5852 6163 -9 15679 138 41 19 chr13 97138276 97140519 -4732650 + Tigger4(Zombi) DNA MER2_type 423 2731 0 782 299 47 49 chr13 97140605 97141218 -4731951 + L1ME3A LINE L1 5357 5968 -263 282 161 0 81 chr13 97141221 97141283 -4731886 + MLT1B LTR MaLR 1 57 -317 1637 149 66 54 chr13 97141295 97141630 -4731539 + MER44D DNA MER2_type 1 609 0 * 1692 119 71 42 chr13 97141630 97141936 -4731233 + MLT1B LTR MaLR 76 390 0 230 221 0 44 chr13 97141936 97142004 -4731165 + L1ME3A LINE L1 5967 6031 -208 453 271 26 0 chr13 97142540 97142695 -4730474 + MER53 DNA DNA 19 177 -12 391 254 58 35 chr13 97142544 97142717 -4730452 - MER53 DNA DNA -12 177 1 * 407 247 21 0 chr13 97143207 97143304 -4729865 + MIR SINE MIR 41 139 -123 548 281 127 55 chr13 97143309 97143694 -4729475 - LTR16A1 LTR ERVL -2 455 43 183 373 18 9 chr13 97143723 97143833 -4729336 + MIR SINE MIR 141 251 -11 240 200 0 0 chr13 97144139 97144199 -4728970 + CT-rich Low_complexity Low_complexity 2 61 0 243 284 97 15 chr13 97144582 97144716 -4728453 - HAL1 LINE L1 -384 2123 1979 * 461 285 65 11 chr13 97144712 97144898 -4728271 - HAL1 LINE L1 -854 1653 1458 2940 138 11 7 chr13 97146373 97146822 -4726347 + L1PA13 LINE L1 5702 6152 -11 191 323 138 39 chr13 97148318 97148550 -4724619 + MIR SINE MIR 8 262 0 2626 255 11 23 chr13 97149436 97150095 -4723074 + MER82 DNA MER2_type 2 652 -1 2468 176 24 2 chr13 97150447 97150872 -4722297 - Tigger2a DNA MER2_type 0 434 1 1469 185 94 29 chr13 97151770 97152111 -4721058 + MLT1A1 LTR MaLR 1 363 -2 24 0 0 0 chr13 97155245 97155269 -4717900 + AT_rich Low_complexity Low_complexity 1 24 0 197 353 94 12 chr13 97155636 97155721 -4717448 - L2 LINE L2 -55 3217 3126 3196 170 46 15 chr13 97157227 97157885 -4715284 + L1MB7 LINE L1 5491 6168 -16 245 295 0 0 chr13 97158931 97158992 -4714177 + (TG)n Simple_repeat Simple_repeat 2 62 0 2107 75 11 0 chr13 97159550 97159828 -4713341 - L1PA6 LINE L1 -11 6143 5863 252 304 200 32 chr13 97160239 97160364 -4712805 + L2 LINE L2 3127 3272 0 186 103 0 0 chr13 97160606 97160635 -4712534 + (T)n Simple_repeat Simple_repeat 1 29 0 253 329 12 0 chr13 97162727 97162812 -4710357 - L3 LINE CR1 -210 1367 1282 325 301 28 62 chr13 97163147 97163323 -4709846 - MIR SINE MIR -73 189 20 650 243 77 12 chr13 97164222 97164469 -4708700 - MLT1C LTR MaLR -204 263 1 444 311 8 16 chr13 97164734 97164856 -4708313 - L2 LINE L2 -18 3254 3134 684 316 24 0 chr13 97164897 97165109 -4708060 + MIR SINE MIR 46 262 0 248 339 39 24 chr13 97165114 97165241 -4707928 - L2 LINE L2 -191 3081 2953 1010 211 14 5 chr13 97165833 97166051 -4707118 - MER58A DNA MER1_type -4 220 1 263 347 34 20 chr13 97166121 97166268 -4706901 + L2 LINE L2 2331 2479 -835 23 0 0 0 chr13 97166384 97166407 -4706762 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr13 97166981 97167004 -4706165 + AT_rich Low_complexity Low_complexity 1 23 0 441 295 142 16 chr13 97167496 97167576 -4705593 + L1ME2 LINE L1 5726 5794 -370 949 256 96 6 chr13 97167576 97167889 -4705280 + MER58B DNA MER1_type 1 341 0 441 295 142 16 chr13 97167889 97168195 -4704974 + L1ME2 LINE L1 5794 6161 -3 387 290 73 0 chr13 97168428 97168552 -4704617 - MIR SINE MIR -83 179 47 2263 101 0 0 chr13 97170786 97171103 -4702066 - AluSq SINE Alu 0 317 1 1145 218 78 3 chr13 97171715 97172036 -4701133 - MER2 DNA MER2_type 0 345 1 2816 104 41 5 chr13 97172171 97172584 -4700585 + MSTA LTR MaLR 1 428 0 1536 245 67 40 chr13 97172699 97172739 -4700430 - MLT2B1 LTR ERVL 0 520 483 237 108 0 0 chr13 97172739 97172776 -4700393 + (CA)n Simple_repeat Simple_repeat 2 38 0 1536 245 67 40 chr13 97172776 97173241 -4699928 - MLT2B1 LTR ERVL -37 483 1 21 0 0 0 chr13 97174339 97174360 -4698809 + AT_rich Low_complexity Low_complexity 1 21 0 486 291 109 32 chr13 97175315 97175690 -4697479 + MARNA DNA Mariner 89 492 -94 1426 156 96 71 chr13 97175751 97176117 -4697052 - THE1C LTR MaLR 0 375 1 367 294 40 44 chr13 97176899 97177084 -4696085 - MIR SINE MIR -65 197 15 198 0 0 0 chr13 97177974 97177996 -4695173 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 2786 155 35 50 chr13 97178717 97179337 -4693832 - L1MA5 LINE L1 -77 6223 5613 1920 166 38 30 chr13 97179337 97179883 -4693286 + MLT2A2 LTR ERVL 1 554 0 2608 149 69 36 chr13 97179883 97180521 -4692648 - L1MA5 LINE L1 -683 5617 4944 279 0 0 0 chr13 97180521 97180552 -4692617 + (TTTAG)n Simple_repeat Simple_repeat 3 33 0 2608 149 69 36 chr13 97180552 97180732 -4692437 - L1MA5 LINE L1 -1356 4944 4771 23 0 0 0 chr13 97181051 97181074 -4692095 + AT_rich Low_complexity Low_complexity 1 23 0 628 236 75 12 chr13 97181617 97181778 -4691391 - MER5B DNA MER1_type -7 171 1 339 301 24 16 chr13 97181798 97181921 -4691248 - MIR SINE MIR -109 153 30 211 340 20 20 chr13 97182098 97182198 -4690971 - MER5A DNA MER1_type -22 167 68 264 59 0 0 chr13 97182550 97182584 -4690585 + (TA)n Simple_repeat Simple_repeat 2 35 0 200 270 0 81 chr13 97182739 97182827 -4690342 + GA-rich Low_complexity Low_complexity 3 70 -102 2283 60 3 3 chr13 97182827 97183128 -4690041 + L1PB1 LINE L1 5851 6151 0 200 270 0 81 chr13 97183128 97183224 -4689945 + GA-rich Low_complexity Low_complexity 70 172 0 194 211 26 0 chr13 97183256 97183294 -4689875 - MIR SINE MIR -70 192 154 23 0 0 0 chr13 97185903 97185926 -4687243 + AT_rich Low_complexity Low_complexity 1 23 0 2551 106 8 16 chr13 97186966 97187344 -4685825 - THE1C LTR MaLR 0 375 1 198 209 0 0 chr13 97187869 97187912 -4685257 + (TG)n Simple_repeat Simple_repeat 1 43 0 288 308 53 8 chr13 97187930 97188063 -4685106 - L2 LINE L2 -899 2415 2277 277 242 110 77 chr13 97188437 97188515 -4684654 + HsTC2a DNA Tc2 32 106 -1618 1897 161 0 23 chr13 97188515 97188825 -4684344 + AluSx SINE Alu 1 303 -9 277 242 110 77 chr13 97188825 97188928 -4684241 + HsTC2a DNA Tc2 106 219 -525 675 199 143 34 chr13 97188969 97189235 -4683934 + L1M4 LINE L1 2452 2746 -3400 * 983 256 34 61 chr13 97189233 97189760 -4683409 + L1ME1 LINE L1 5649 6161 -5 376 256 25 16 chr13 97189770 97189891 -4683278 + HsTC2 DNA Tc2 1751 1872 -26 1449 102 51 0 chr13 97189892 97190108 -4683061 + MER30 DNA MER1_type 3 229 -1 296 270 58 36 chr13 97190460 97190597 -4682572 - L2 LINE L2 -1037 2277 2138 301 295 21 57 chr13 97191712 97191905 -4681264 + MER5A DNA MER1_type 1 186 -3 272 188 0 31 chr13 97191979 97192043 -4681126 + CT-rich Low_complexity Low_complexity 3 64 0 235 342 63 0 chr13 97192047 97192126 -4681043 - L2 LINE L2 -19 3294 3211 4387 57 12 0 chr13 97192358 97192939 -4680230 + L1PA7 LINE L1 5540 6127 -27 225 154 0 87 chr13 97192939 97193043 -4680126 + (CATATA)n Simple_repeat Simple_repeat 5 99 0 302 328 48 16 chr13 97193325 97193450 -4679719 - L2 LINE L2 -4 3268 3140 2479 155 25 6 chr13 97193632 97194102 -4679067 - L1MA8 LINE L1 -20 7292 6814 1233 149 0 16 chr13 97194102 97194296 -4678873 + AluJb SINE Alu 112 302 -10 12731 223 42 15 chr13 97194300 97199758 -4673411 - L1MA8 LINE L1 -486 6826 1539 198 0 0 0 chr13 97200935 97200957 -4672212 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 267 31 0 0 chr13 97200956 97200988 -4672181 + (GA)n Simple_repeat Simple_repeat 2 33 0 28 0 0 0 chr13 97201239 97201267 -4671902 + AT_rich Low_complexity Low_complexity 1 28 0 1952 233 62 26 chr13 97201409 97202065 -4671104 + Zaphod DNA AcHobo 150 829 -3202 1613 243 207 19 chr13 97202060 97202841 -4670328 + Zaphod DNA AcHobo 3083 4010 -21 * 186 71 0 0 chr13 97203245 97203273 -4669896 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 251 205 0 0 chr13 97203379 97203418 -4669751 + L2 LINE L2 3217 3255 -17 2489 42 0 0 chr13 97204410 97204698 -4668471 + AluY SINE Alu 1 288 -23 294 143 0 0 chr13 97208655 97208704 -4664465 + (CA)n Simple_repeat Simple_repeat 2 50 0 276 347 56 81 chr13 97209937 97210114 -4663055 - L2 LINE L2 -407 2907 2742 1922 170 56 0 chr13 97210114 97210438 -4662731 - MER2 DNA MER2_type -1 343 2 276 347 56 81 chr13 97210438 97210617 -4662552 - L2 LINE L2 -572 2742 2560 1486 130 7 113 chr13 97211033 97211326 -4661843 + AluSx SINE Alu 1 262 -50 1041 199 70 64 chr13 97211364 97211721 -4661448 + MLT1A1 LTR MaLR 7 365 0 22 70 0 0 chr13 97212298 97212341 -4660828 + AT_rich Low_complexity Low_complexity 1 43 0 565 278 16 21 chr13 97212825 97213019 -4660150 - L1MB1 LINE L1 -13 6155 5963 198 336 19 28 chr13 97214995 97215102 -4658067 + MIR SINE MIR 70 175 -87 24 32 0 0 chr13 97215115 97215146 -4658023 + AT_rich Low_complexity Low_complexity 1 31 0 479 332 42 60 chr13 97215148 97215534 -4657635 - L2 LINE L2 0 3272 2893 2307 109 0 3 chr13 97215534 97215846 -4657323 + AluSx SINE Alu 2 312 0 479 332 42 60 chr13 97215846 97215893 -4657276 - L2 LINE L2 -379 2893 2847 183 341 0 0 chr13 97216002 97216043 -4657126 + L2 LINE L2 3139 3179 -93 21 36 0 0 chr13 97216937 97216965 -4656204 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr13 97217092 97217114 -4656055 + AT_rich Low_complexity Low_complexity 1 22 0 2366 94 3 0 chr13 97217163 97217462 -4655707 - AluSp SINE Alu -13 300 1 1513 282 132 38 chr13 97217490 97218509 -4654660 + L2 LINE L2 2142 3281 -32 192 40 0 0 chr13 97220609 97220634 -4652535 + (CA)n Simple_repeat Simple_repeat 2 26 0 2044 154 49 32 chr13 97221085 97221454 -4651715 + THE1C LTR MaLR 1 375 0 28 0 0 0 chr13 97221677 97221705 -4651464 + AT_rich Low_complexity Low_complexity 1 28 0 1992 135 0 10 chr13 97222496 97222832 -4650337 + AluSx SINE Alu 1 333 0 207 139 0 0 chr13 97222972 97223008 -4650161 + (CTATT)n Simple_repeat Simple_repeat 2 37 0 399 297 132 14 chr13 97223476 97223688 -4649481 - MIR SINE MIR -5 257 21 221 293 0 121 chr13 97223708 97223848 -4649321 + MIR SINE MIR 70 192 -70 1993 158 0 0 chr13 97224080 97224377 -4648792 + AluSx SINE Alu 1 297 -15 1561 176 47 7 chr13 97224396 97224674 -4648495 + AluJo SINE Alu 1 289 -23 186 296 216 0 chr13 97225833 97225921 -4647248 - L2 LINE L2 -8 3305 3199 254 284 0 0 chr13 97226409 97226476 -4646693 + GA-rich Low_complexity Low_complexity 2 68 0 297 0 0 0 chr13 97227990 97228023 -4645146 + (TG)n Simple_repeat Simple_repeat 1 33 0 225 195 39 26 chr13 97228063 97228140 -4645029 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 1778 215 41 55 chr13 97229088 97229600 -4643569 + MLT1D LTR MaLR 1 505 0 301 197 15 30 chr13 97229682 97229748 -4643421 + MER94 DNA DNA 11 75 -59 1834 149 31 0 chr13 97229753 97230042 -4643127 + AluSx SINE Alu 4 301 -11 648 345 31 0 chr13 97230837 97231063 -4642106 - MIR SINE MIR -3 259 27 340 316 77 45 chr13 97231313 97231560 -4641609 + L1MEd LINE L1 1001 1255 -4864 2050 65 72 4 chr13 97231590 97231852 -4641317 + AluSc SINE Alu 9 288 -21 600 276 153 33 chr13 97233075 97233585 -4639584 + L1MEd LINE L1 2898 3468 -2661 3564 287 90 27 chr13 97233871 97235610 -4637559 + L2 LINE L2 749 2597 -717 276 53 0 0 chr13 97236456 97236494 -4636675 + (CA)n Simple_repeat Simple_repeat 2 39 0 490 332 66 42 chr13 97236639 97237063 -4636106 + L1MEd LINE L1 268 711 -5408 216 0 0 0 chr13 97237063 97237087 -4636082 + (CA)n Simple_repeat Simple_repeat 1 24 0 490 332 66 42 chr13 97237087 97237240 -4635929 + L1MEd LINE L1 711 859 -5260 234 288 58 29 chr13 97237288 97237427 -4635742 + L1M2 LINE L1 2417 2559 -4290 1115 312 116 36 chr13 97237871 97239332 -4633837 + L1M2 LINE L1 2857 4434 -2414 240 312 101 63 chr13 97239742 97240107 -4633062 - L2 LINE L2 -93 3220 2842 382 306 194 28 chr13 97240338 97240734 -4632435 - L2 LINE L2 -549 2765 2304 630 262 34 39 chr13 97240738 97240944 -4632225 - MLT1A2 LTR MaLR -50 324 120 616 297 144 56 chr13 97240947 97241045 -4632124 - L2 LINE L2 -1004 2310 2222 2106 120 7 3 chr13 97241045 97241346 -4631823 - AluSx SINE Alu -10 302 1 616 297 144 56 chr13 97241346 97241712 -4631457 - L2 LINE L2 -1092 2222 1805 291 306 125 38 chr13 97242188 97242348 -4630821 - MER5A DNA MER1_type -15 174 1 189 0 0 0 chr13 97242442 97242463 -4630706 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr13 97243075 97243097 -4630072 + AT_rich Low_complexity Low_complexity 1 22 0 228 258 0 16 chr13 97244745 97244807 -4628362 + T-rich Low_complexity Low_complexity 5 65 0 394 209 34 154 chr13 97244850 97245084 -4628085 + L1MC5 LINE L1 6835 7040 -921 2168 122 6 3 chr13 97245084 97245396 -4627773 + AluSq SINE Alu 1 313 0 39345 83 9 7 chr13 97245419 97251551 -4621618 + L1PA6 LINE L1 11 6154 0 721 190 90 32 chr13 97251562 97251939 -4621230 + L1MC5 LINE L1 7036 7390 -571 688 83 28 0 chr13 97251939 97252047 -4621122 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 721 190 90 32 chr13 97252047 97252372 -4620797 + L1MC5 LINE L1 7390 7917 -44 21 36 0 0 chr13 97252467 97252495 -4620674 + AT_rich Low_complexity Low_complexity 1 28 0 591 295 111 13 chr13 97252556 97252854 -4620315 - L1ME LINE L1 -365 5756 5430 276 330 120 57 chr13 97254131 97254498 -4618671 + L2 LINE L2 2857 3246 -26 216 322 33 25 chr13 97254972 97255093 -4618076 + L2 LINE L2 3191 3312 -1 2098 270 25 8 chr13 97255370 97256006 -4617163 - MER82 DNA MER2_type 0 653 7 327 390 13 18 chr13 97256205 97256433 -4616736 - MIR SINE MIR -28 234 8 324 0 0 0 chr13 97256589 97256625 -4616544 + (TG)n Simple_repeat Simple_repeat 1 36 0 225 83 0 0 chr13 97256625 97256661 -4616508 + (GA)n Simple_repeat Simple_repeat 2 37 0 235 274 186 10 chr13 97257537 97257639 -4615530 + L2 LINE L2 3192 3311 -2 27 62 0 0 chr13 97258020 97258068 -4615101 + AT_rich Low_complexity Low_complexity 1 48 0 23 54 0 0 chr13 97258160 97258197 -4614972 + AT_rich Low_complexity Low_complexity 1 37 0 452 216 20 0 chr13 97259328 97259430 -4613739 - MIR3 SINE MIR -23 185 82 2264 44 0 41 chr13 97259464 97259793 -4613376 - AluY SINE Alu 0 317 1 355 227 10 10 chr13 97260610 97260707 -4612462 + MIR SINE MIR 124 220 -42 23 33 0 0 chr13 97261384 97261414 -4611755 + AT_rich Low_complexity Low_complexity 1 30 0 309 346 87 0 chr13 97261744 97261998 -4611171 + L1M4 LINE L1 2897 3172 -2974 2200 56 0 4 chr13 97262252 97262518 -4610651 + AluY SINE Alu 41 305 -6 614 298 56 71 chr13 97262647 97263392 -4609777 + L1M4 LINE L1 3684 5034 -1112 1143 121 188 0 chr13 97264370 97264577 -4608592 - MER1B DNA MER1_type 0 339 134 262 54 0 0 chr13 97264572 97264618 -4608551 - MER1B DNA MER1_type -169 128 134 * 261 130 0 0 chr13 97264613 97264659 -4608510 - MER1B DNA MER1_type -158 139 134 * 261 130 0 0 chr13 97264654 97264700 -4608469 - MER1B DNA MER1_type -158 139 134 261 130 0 0 chr13 97264695 97264741 -4608428 - MER1B DNA MER1_type -158 139 134 261 130 0 0 chr13 97264736 97264782 -4608387 - MER1B DNA MER1_type -158 139 134 * 277 140 0 0 chr13 97264777 97264827 -4608342 - MER1B DNA MER1_type -158 139 130 699 154 22 9 chr13 97264829 97264994 -4608175 - MER1B DNA MER1_type -158 139 3 317 304 72 58 chr13 97265558 97266071 -4607098 + HAL1b LINE L1 61 580 -768 1124 272 63 59 chr13 97266573 97267457 -4605712 + L1MC5 LINE L1 6648 7525 -436 2026 157 123 5 chr13 97267464 97267847 -4605322 - MSTA LTR MaLR 0 428 1 343 301 84 14 chr13 97269706 97269849 -4603320 + MIR SINE MIR 14 166 -96 273 256 63 80 chr13 97271503 97271741 -4601428 - MER112 DNA MER1_type -19 241 8 225 180 0 0 chr13 97272302 97272352 -4600817 + GA-rich Low_complexity Low_complexity 2 51 0 375 319 75 49 chr13 97274937 97275163 -4598006 + MIR SINE MIR 31 262 0 1481 254 51 20 chr13 97275295 97275908 -4597261 + L1MEc LINE L1 248 879 -5728 687 75 0 0 chr13 97275914 97276008 -4597161 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 834 261 67 26 chr13 97276041 97276520 -4596649 + L1MEc LINE L1 1002 1388 -5038 229 51 51 0 chr13 97276528 97276567 -4596602 + (CA)n Simple_repeat Simple_repeat 1 41 0 188 286 33 11 chr13 97277240 97277331 -4595838 + L2 LINE L2 2935 3027 -286 223 83 0 28 chr13 97278867 97278903 -4594266 - MIR SINE MIR -110 152 118 245 234 169 13 chr13 97279088 97279165 -4594004 + L2 LINE L2 3225 3313 0 1383 168 79 10 chr13 97280207 97280511 -4592658 + L1MA4 LINE L1 5970 6294 -6 195 129 0 0 chr13 97281477 97281508 -4591661 + (TTC)n Simple_repeat Simple_repeat 3 33 0 273 306 92 10 chr13 97282260 97282358 -4590811 + L2 LINE L2 3206 3311 -2 1494 164 54 24 chr13 97284100 97284435 -4588734 - MLT1A1 LTR MaLR -2 363 19 345 333 103 31 chr13 97284626 97284887 -4588282 + L1ME LINE L1 5309 5588 -533 394 266 78 52 chr13 97284914 97285106 -4588063 - L2 LINE L2 -2 3311 3115 385 294 20 13 chr13 97285793 97285946 -4587223 + Charlie2 DNA MER1_type 6 159 -2703 652 336 78 63 chr13 97286244 97287876 -4585293 - ERVL LTR ERVL -404 5360 3705 798 318 128 3 chr13 97288149 97288539 -4584630 - LTR16B LTR ERVL -25 439 1 363 220 0 0 chr13 97289106 97289197 -4583972 + CT-rich Low_complexity Low_complexity 2 92 0 2015 268 26 30 chr13 97289883 97291220 -4581949 + L1MA7 LINE L1 2262 3317 -4249 225 0 0 0 chr13 97291311 97291336 -4581833 + (CA)n Simple_repeat Simple_repeat 2 26 0 7559 215 37 15 chr13 97291367 97294561 -4578608 + L1MA7 LINE L1 4146 7486 -224 192 40 0 0 chr13 97294561 97294586 -4578583 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 7559 215 37 15 chr13 97294586 97294816 -4578353 + L1MA7 LINE L1 7486 7710 0 3753 70 6 3 chr13 97294807 97294837 -4578332 + L1PA8A LINE L1 5291 5319 -812 * 2055 98 40 0 chr13 97294837 97295133 -4578036 - L1PA8A LINE L1 -2 6129 5822 3753 70 6 3 chr13 97295133 97295640 -4577529 + L1PA8A LINE L1 5319 5825 -306 1711 193 30 71 chr13 97296390 97296899 -4576270 + Charlie1b DNA MER1_type 34 521 -2 888 172 35 70 chr13 97297817 97298073 -4575096 + MLT1D LTR MaLR 1 247 -258 239 105 26 0 chr13 97298120 97298158 -4575011 + MLT1D LTR MaLR 250 288 -217 754 159 0 36 chr13 97298529 97298667 -4574502 + FLAM_C SINE Alu 1 133 0 901 287 63 29 chr13 97300185 97300595 -4572574 + L1MC/D LINE L1 5327 5755 -2053 1917 125 107 27 chr13 97300595 97300932 -4572237 - THE1B LTR MaLR 0 364 1 901 287 63 29 chr13 97300932 97300964 -4572205 + L1MC/D LINE L1 5755 5784 -2024 295 323 30 12 chr13 97301546 97301713 -4571456 + L1ME2 LINE L1 55 224 -6172 357 256 70 103 chr13 97301769 97302042 -4571127 + L1ME2 LINE L1 319 582 -5814 1760 270 77 22 chr13 97302402 97303118 -4570051 + L1ME2 LINE L1 5470 6224 -9 331 248 37 13 chr13 97303123 97303273 -4569896 + L1MC/D LINE L1 5711 5861 -302 1705 167 11 4 chr13 97303526 97303807 -4569362 + AluSx SINE Alu 1 283 -29 201 94 0 0 chr13 97303808 97303840 -4569329 + (TA)n Simple_repeat Simple_repeat 2 33 0 930 92 25 16 chr13 97303852 97304038 -4569131 + (TA)n Simple_repeat Simple_repeat 1 184 -486 23 0 0 0 chr13 97304038 97304061 -4569108 + AT_rich Low_complexity Low_complexity 1 23 0 930 92 25 16 chr13 97304061 97304170 -4568999 + (TA)n Simple_repeat Simple_repeat 184 291 -379 305 191 44 15 chr13 97304170 97304238 -4568931 - L1MCa LINE L1 -4362 2064 1995 930 92 25 16 chr13 97304238 97304517 -4568652 + (TA)n Simple_repeat Simple_repeat 291 670 0 326 279 67 14 chr13 97304663 97304842 -4568327 + L1ME4a LINE L1 5692 5881 -240 189 294 108 59 chr13 97305184 97305286 -4567883 + L2 LINE L2 3139 3245 -27 813 122 0 0 chr13 97305320 97305427 -4567742 + FLAM_C SINE Alu 13 119 -24 229 211 173 0 chr13 97305672 97305724 -4567445 + L2 LINE L2 3211 3271 -1 429 299 15 8 chr13 97306264 97306398 -4566771 + HERVL LTR ERVL 2149 2283 -3481 2323 122 138 5 chr13 97306646 97307024 -4566145 + MSTA LTR MaLR 1 428 0 320 333 12 6 chr13 97307696 97307861 -4565308 + HERVL LTR ERVL 5179 5344 -310 29296 55 8 1 chr13 97307911 97312367 -4560802 + L1PA5 LINE L1 1664 6154 0 885 280 83 33 chr13 97312482 97312878 -4560291 + LTR16A LTR ERVL 26 441 -9 1720 221 88 33 chr13 97313300 97313664 -4559505 + LTR40a LTR ERVL 4 403 -116 1610 195 0 10 chr13 97313664 97313962 -4559207 - AluJb SINE Alu -17 295 1 1720 221 88 33 chr13 97313962 97314086 -4559083 + LTR40a LTR ERVL 403 519 0 219 69 0 0 chr13 97315819 97315848 -4557321 + (TAA)n Simple_repeat Simple_repeat 2 30 0 227 298 10 19 chr13 97316289 97316393 -4556776 + (TA)n Simple_repeat Simple_repeat 1 103 0 22 94 0 0 chr13 97318134 97318198 -4554971 + AT_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr13 97318222 97318257 -4554912 + AT_rich Low_complexity Low_complexity 1 35 0 4679 61 7 2 chr13 97318285 97318917 -4554252 - L1PA7 LINE L1 -303 5851 5217 2638 59 0 0 chr13 97318917 97319222 -4553947 + L1PA7 LINE L1 5846 6151 -3 285 253 8 4 chr13 97319265 97319512 -4553657 + CT-rich Low_complexity Low_complexity 1 248 0 462 297 5 32 chr13 97319555 97319740 -4553429 + LTR67 LTR ERVL 371 550 -7 1844 235 56 75 chr13 97319761 97319882 -4553287 - MER119 DNA MER1_type -1 582 460 2802 118 3 0 chr13 97319882 97320245 -4552924 + THE1B LTR MaLR 1 364 0 11327 116 35 0 chr13 97320245 97321772 -4551397 + THE1B-int LTR MaLR 1 1580 0 2716 112 3 29 chr13 97321772 97322146 -4551023 + THE1B LTR MaLR 1 364 0 1844 235 56 75 chr13 97322146 97322610 -4550559 - MER119 DNA MER1_type -120 463 6 219 346 34 39 chr13 97322834 97323013 -4550156 - L2 LINE L2 -170 3102 2925 283 274 30 105 chr13 97323328 97323594 -4549575 - L2 LINE L2 -105 3208 2963 241 241 17 0 chr13 97323595 97323653 -4549516 + MER20 DNA MER1_type 1 59 -160 1272 181 19 9 chr13 97323658 97323874 -4549295 + MER20 DNA MER1_type 1 218 -1 3484 127 6 10 chr13 97323887 97324385 -4548784 + LOR1a LTR ERV1 2 497 0 2209 109 70 25 chr13 97324969 97325328 -4547841 - THE1C LTR MaLR 0 375 1 184 293 121 10 chr13 97325393 97325492 -4547677 - MIR SINE MIR -6 256 147 302 293 38 19 chr13 97325492 97325598 -4547571 + L2 LINE L2 3206 3313 0 322 234 13 13 chr13 97325605 97325682 -4547487 - MIR SINE MIR -122 140 64 1040 38 8 0 chr13 97327328 97327461 -4545708 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 240 295 0 0 chr13 97329040 97329101 -4544068 + CT-rich Low_complexity Low_complexity 4 64 0 802 242 35 37 chr13 97329108 97329335 -4543834 + MIR SINE MIR 38 262 0 1927 167 55 3 chr13 97329666 97330032 -4543137 + L1MB7 LINE L1 5792 6176 -8 269 298 85 21 chr13 97330041 97330182 -4542987 - L3 LINE CR1 -931 646 497 373 315 81 47 chr13 97330475 97330589 -4542580 + L1M4 LINE L1 4074 4183 -1963 2216 106 17 0 chr13 97330589 97330882 -4542287 + AluSx SINE Alu 1 298 -14 373 315 81 47 chr13 97330882 97331002 -4542167 + L1M4 LINE L1 4183 4316 -1830 1846 173 27 67 chr13 97331073 97331478 -4541691 + MLT1B LTR MaLR 2 390 0 498 279 29 3 chr13 97332249 97332435 -4540734 + L1PA16 LINE L1 5968 6165 0 29 28 0 0 chr13 97332768 97332804 -4540365 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr13 97333871 97333918 -4539251 + AT_rich Low_complexity Low_complexity 1 47 0 1114 179 44 20 chr13 97334860 97335111 -4538058 - L1MC4a LINE L1 -533 7275 7019 303 191 71 36 chr13 97335139 97335223 -4537946 - L1MC4a LINE L1 -700 7108 7022 1301 247 136 24 chr13 97335227 97335729 -4537440 + L1MC4a LINE L1 7251 7808 0 24 0 0 0 chr13 97335907 97335931 -4537238 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr13 97335996 97336027 -4537142 + AT_rich Low_complexity Low_complexity 1 31 0 606 165 51 7 chr13 97336557 97336831 -4536338 + (TAGA)n Simple_repeat Simple_repeat 1 286 0 478 178 40 11 chr13 97336843 97337017 -4536152 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 278 286 45 26 chr13 97337946 97338100 -4535069 + L1ME4a LINE L1 5965 6121 0 1330 68 0 0 chr13 97338974 97339137 -4534032 - L1PA13 LINE L1 0 6163 6001 2339 142 3 3 chr13 97339138 97339518 -4533651 + L1P LINE L1 4786 5165 -981 23 33 0 0 chr13 97339556 97339586 -4533583 + AT_rich Low_complexity Low_complexity 1 30 0 228 67 0 0 chr13 97341327 97341357 -4531812 + (TG)n Simple_repeat Simple_repeat 1 30 0 2128 111 0 16 chr13 97343523 97343829 -4529340 + AluSx SINE Alu 1 301 -11 1760 185 132 0 chr13 97344254 97344610 -4528559 - MER57A LTR ERV1 0 403 1 443 253 77 95 chr13 97344738 97344959 -4528210 + L2 LINE L2 2600 2816 -498 357 268 0 0 chr13 97345271 97345342 -4527827 + L2 LINE L2 3243 3313 0 213 359 117 0 chr13 97345580 97345683 -4527486 + MIR SINE MIR 20 134 -74 2173 104 10 0 chr13 97345726 97346024 -4527145 + AluSx SINE Alu 1 301 -11 452 292 29 41 chr13 97347483 97347654 -4525515 + MIR SINE MIR 4 172 -90 854 269 51 44 chr13 97347900 97348325 -4524844 + L1ME3A LINE L1 4957 5399 -765 5431 126 219 48 chr13 97348325 97349417 -4523752 - MER52C LTR ERV1 0 1278 1 854 269 51 44 chr13 97349417 97349620 -4523549 + L1ME3A LINE L1 5399 5599 -565 495 278 49 29 chr13 97349671 97350017 -4523152 + L1ME3A LINE L1 5777 6163 -7 227 318 33 33 chr13 97350642 97350793 -4522376 + MIR SINE MIR 2 152 -110 436 336 48 51 chr13 97351098 97351413 -4521756 + L2 LINE L2 2957 3270 -2 1644 176 90 3 chr13 97351999 97352311 -4520858 - MER61A LTR ERV1 0 343 5 806 199 0 0 chr13 97353680 97353816 -4519353 - FRAM SINE Alu 0 40 1 875 228 16 21 chr13 97353846 97354039 -4519130 - AluJo SINE Alu -118 194 3 302 173 0 0 chr13 97354077 97354129 -4519040 + LTR30 LTR ERV1 1 52 -670 529 65 8 9 chr13 97354129 97354220 -4518949 + LTR12 LTR ERV1 53 258 -456 391 246 9 0 chr13 97354220 97354330 -4518839 + LTR30 LTR ERV1 524 634 -88 1941 59 0 0 chr13 97354330 97354566 -4518603 + LTR12 LTR ERV1 479 714 0 2849 61 41 0 chr13 97354618 97354962 -4518207 - L1PA7 LINE L1 -8 6146 5789 2824 67 5 25 chr13 97354961 97355564 -4517605 + L1P3 LINE L1 5000 5588 -566 1825 113 40 18 chr13 97355683 97355958 -4517211 + AluSx SINE Alu 1 281 -31 235 68 23 68 chr13 97355958 97355984 -4517185 + FLAM_C SINE Alu 1 299 0 2534 54 0 26 chr13 97356819 97357132 -4516037 - AluY SINE Alu -6 305 1 340 260 20 10 chr13 97357499 97357599 -4515570 - MER94 DNA DNA -23 111 11 1714 201 6 6 chr13 97357742 97358076 -4515093 - MLT1A1 LTR MaLR -1 364 31 234 179 0 0 chr13 97358082 97358121 -4515048 + U6 snRNA snRNA 1 39 -68 444 200 96 9 chr13 97358124 97358239 -4514930 - MLT1A1 LTR MaLR -240 125 1 426 309 135 51 chr13 97358420 97359868 -4513301 - L2 LINE L2 -2 3311 1744 2031 112 0 0 chr13 97359895 97360163 -4513006 + AluSx SINE Alu 1 268 -44 880 121 0 0 chr13 97360163 97360287 -4512882 + AluSg/x SINE Alu 185 308 -2 355 289 134 32 chr13 97360354 97360631 -4512538 - L2 LINE L2 -1635 1679 1375 981 60 0 49 chr13 97360898 97361083 -4512086 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 2031 146 7 0 chr13 97361097 97361391 -4511778 - AluSx SINE Alu -16 296 1 211 340 21 31 chr13 97361642 97361739 -4511430 - L2 LINE L2 -6 3266 3171 864 277 74 60 chr13 97361810 97362229 -4510940 + MLT1J LTR MaLR 62 486 -25 352 335 38 89 chr13 97362297 97362609 -4510560 - L2 LINE L2 -204 3068 2795 2013 147 3 0 chr13 97362609 97362894 -4510275 + AluSx SINE Alu 5 290 -22 352 335 38 89 chr13 97362894 97363061 -4510108 - L2 LINE L2 -477 2795 2621 252 289 66 59 chr13 97363241 97363393 -4509776 + L2 LINE L2 3151 3303 -10 2340 97 3 0 chr13 97364771 97365069 -4508100 - AluSq SINE Alu -14 299 1 341 266 176 22 chr13 97365329 97365551 -4507618 - L1ME4a LINE L1 -174 5947 5692 238 316 21 0 chr13 97365598 97365693 -4507476 - L1ME4a LINE L1 -423 5698 5602 344 232 24 0 chr13 97366704 97366786 -4506383 - L1MA10 LINE L1 -2 6332 6249 264 323 0 0 chr13 97366902 97366916 -4506253 - L1MA10 LINE L1 -3 6331 6318 770 266 43 65 chr13 97366916 97367285 -4505884 - L1ME2 LINE L1 -9 6155 5795 2039 113 52 7 chr13 97368603 97368894 -4504275 + AluSx SINE Alu 1 304 -8 2612 145 9 21 chr13 97368902 97369337 -4503832 - MER57B LTR ERV1 -4 430 1 183 376 12 12 chr13 97369650 97369735 -4503434 - L3 LINE CR1 -198 1379 1295 185 156 0 0 chr13 97370008 97370040 -4503129 - MIR SINE MIR -77 185 154 196 125 0 0 chr13 97370255 97370287 -4502882 - MIR SINE MIR -77 185 154 196 125 0 0 chr13 97370305 97370337 -4502832 - MIR SINE MIR -77 185 154 196 125 0 0 chr13 97370355 97370387 -4502782 - MIR SINE MIR -77 185 154 196 125 0 0 chr13 97370405 97370437 -4502732 - MIR SINE MIR -77 185 154 196 125 0 0 chr13 97370455 97370487 -4502682 - MIR SINE MIR -77 185 154 226 273 45 0 chr13 97370505 97370571 -4502598 - MIR SINE MIR -77 185 117 252 0 0 0 chr13 97370824 97370852 -4502317 + (TA)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr13 97370852 97370887 -4502282 + (TG)n Simple_repeat Simple_repeat 1 35 0 963 147 0 0 chr13 97370887 97371050 -4502119 + (TA)n Simple_repeat Simple_repeat 2 164 0 2117 99 0 0 chr13 97371053 97371316 -4501853 - AluSc SINE Alu -36 273 11 180 111 0 0 chr13 97371705 97371732 -4501437 + (CAAAAA)n Simple_repeat Simple_repeat 5 31 0 3083 219 33 2 chr13 97372680 97373309 -4499860 + MER82 DNA MER2_type 5 653 0 262 347 120 0 chr13 97373728 97373944 -4499225 + LTR16C LTR ERVL 225 466 -25 2466 64 18 95 chr13 97373944 97374334 -4498835 - L1PA8 LINE L1 -5 6167 5808 2339 64 59 42 chr13 97374334 97374691 -4498478 + L1P LINE L1 4992 5354 -792 1092 231 85 70 chr13 97374874 97375167 -4498002 - MLT1C LTR MaLR 0 467 163 2146 94 10 24 chr13 97375167 97375465 -4497704 - AluY SINE Alu -17 294 1 1092 231 85 70 chr13 97375465 97375629 -4497540 - MLT1C LTR MaLR -304 163 3 268 244 12 47 chr13 97375633 97375719 -4497450 + MIR3 SINE MIR 118 200 -8 21 0 0 0 chr13 97376352 97376373 -4496796 + AT_rich Low_complexity Low_complexity 1 21 0 522 0 0 0 chr13 97376831 97376889 -4496280 + (TTATA)n Simple_repeat Simple_repeat 2 59 0 1385 184 0 72 chr13 97377542 97377867 -4495302 + AluJb SINE Alu 1 303 0 252 284 67 52 chr13 97378907 97379041 -4494128 - L2 LINE L2 0 3272 3137 714 287 121 20 chr13 97379119 97379509 -4493660 + LTR16A LTR ERVL 16 444 -6 1041 193 33 5 chr13 97379736 97379949 -4493220 + MER20 DNA MER1_type 1 219 0 942 192 133 103 chr13 97380009 97380202 -4492967 + MLT1A2 LTR MaLR 4 215 -159 324 48 0 0 chr13 97380202 97380244 -4492925 + (TC)n Simple_repeat Simple_repeat 1 42 0 942 192 133 103 chr13 97380244 97380410 -4492759 + MLT1A2 LTR MaLR 215 374 0 399 200 25 0 chr13 97380604 97380684 -4492485 + HERV16 LTR ERVL 590 671 -4325 468 303 73 27 chr13 97380818 97381118 -4492051 + HERV16 LTR ERVL 862 1175 -3821 1088 143 44 25 chr13 97384518 97384721 -4488448 - L1MA8 LINE L1 -2 6289 6083 214 195 0 0 chr13 97385209 97385250 -4487919 + T-rich Low_complexity Low_complexity 1 41 0 1053 240 70 3 chr13 97385783 97386096 -4487073 - MLT1C LTR MaLR -133 334 1 721 290 63 79 chr13 97386929 97387488 -4485681 + MLT1E LTR MaLR 1 550 -43 1830 202 41 3 chr13 97387495 97387862 -4485307 + MLT1B LTR MaLR 10 390 0 360 158 0 0 chr13 97387863 97387920 -4485249 + MLT1E LTR MaLR 511 567 0 1706 186 0 10 chr13 97388000 97388296 -4484873 + AluJb SINE Alu 1 293 -19 436 342 27 5 chr13 97388650 97388834 -4484335 - MIR SINE MIR -29 233 46 183 42 0 0 chr13 97389820 97389844 -4483325 + (CA)n Simple_repeat Simple_repeat 1 24 0 1559 223 45 37 chr13 97390712 97391175 -4481994 + MLT1C LTR MaLR 1 467 0 210 71 0 0 chr13 97394129 97394157 -4479012 + (T)n Simple_repeat Simple_repeat 1 28 0 204 167 0 0 chr13 97394746 97394794 -4478375 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 356 306 83 31 chr13 97395135 97395459 -4477710 - L3b LINE CR1 -98 1485 1145 305 306 102 0 chr13 97395685 97395832 -4477337 + MLT1L LTR MaLR 1 162 -453 755 256 74 49 chr13 97395967 97396187 -4476982 + MLT1L LTR MaLR 324 537 -78 937 167 56 11 chr13 97396187 97396367 -4476802 + MER5A DNA MER1_type 2 189 0 1878 187 14 14 chr13 97396376 97396739 -4476430 + MLT1A1 LTR MaLR 1 363 -2 755 256 74 49 chr13 97396739 97396793 -4476376 + MLT1L LTR MaLR 544 615 0 2447 88 7 0 chr13 97398460 97398768 -4474401 - AluSq SINE Alu -3 310 1 751 240 28 6 chr13 97398779 97398958 -4474211 + FRAM SINE Alu 1 175 -1 203 128 0 51 chr13 97398959 97398998 -4474171 + (GGAGAA)n Simple_repeat Simple_repeat 4 40 0 283 274 160 6 chr13 97402441 97402616 -4470553 + L2 LINE L2 2887 3088 -225 549 291 26 56 chr13 97402917 97403185 -4469984 + MLT1J LTR MaLR 233 492 -19 283 204 11 102 chr13 97403403 97403471 -4469698 - L2 LINE L2 0 3313 3254 349 272 209 0 chr13 97403471 97403629 -4469540 + MIR SINE MIR 2 192 -70 246 297 16 0 chr13 97403868 97403932 -4469237 + MLT1I LTR MaLR 6 70 -339 953 240 107 58 chr13 97404200 97404809 -4468360 + HAL1b LINE L1 435 1073 -275 684 212 0 0 chr13 97405035 97405167 -4468002 - FLAM_A SINE Alu -1 132 1 467 306 83 31 chr13 97405628 97405952 -4467217 - L3b LINE CR1 -98 1485 1145 305 306 102 0 chr13 97406178 97406325 -4466844 + MLT1L LTR MaLR 1 162 -453 644 256 74 49 chr13 97406460 97406680 -4466489 + MLT1L LTR MaLR 324 537 -78 922 167 56 11 chr13 97406680 97406860 -4466309 + MER5A DNA MER1_type 2 189 0 1825 187 14 14 chr13 97406869 97407232 -4465937 + MLT1A1 LTR MaLR 1 363 -2 644 256 74 49 chr13 97407232 97407286 -4465883 + MLT1L LTR MaLR 544 615 0 249 122 0 0 chr13 97409699 97409740 -4463429 - MADE1 DNA Mariner -39 41 1 272 336 65 100 chr13 97410472 97410921 -4462248 - L2 LINE L2 -2 3270 2838 3909 164 17 16 chr13 97411528 97412296 -4460873 + L1MA7 LINE L1 5522 6290 -1 2395 210 31 91 chr13 97412929 97413850 -4459319 + L1M3e LINE L1 380 1245 -5785 366 325 80 18 chr13 97414238 97414401 -4458768 - L2 LINE L2 -332 2981 2809 1499 233 297 0 chr13 97414872 97415371 -4457798 + MER52A LTR ERV1 1 647 -1108 2471 141 36 11 chr13 97417105 97417150 -4456019 + L1MA4 LINE L1 5742 5784 -516 333 0 0 0 chr13 97417150 97417187 -4455982 + (CA)n Simple_repeat Simple_repeat 2 38 0 2471 141 36 11 chr13 97417187 97417615 -4455554 + L1MA4 LINE L1 5784 6227 -73 273 196 0 0 chr13 97417694 97417750 -4455419 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 196 274 34 164 chr13 97417876 97418022 -4455147 - L2 LINE L2 -188 3084 2958 7030 35 1 0 chr13 97418693 97419585 -4453584 - L1P LINE L1 -1749 4397 3505 26 50 0 0 chr13 97423131 97423171 -4449998 + AT_rich Low_complexity Low_complexity 1 40 0 195 162 0 0 chr13 97423178 97423215 -4449954 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 631 234 6 40 chr13 97423539 97423714 -4449455 - FRAM SINE Alu -10 166 1 22 0 0 0 chr13 97424224 97424246 -4448923 + AT_rich Low_complexity Low_complexity 1 22 0 1114 303 5 32 chr13 97424249 97424661 -4448508 + L1 LINE L1 1 401 -5880 952 225 27 29 chr13 97424668 97424983 -4448186 + L1 LINE L1 2294 2604 -3746 11474 47 1 7 chr13 97425084 97426612 -4446557 + L1P LINE L1 820 2339 -3807 433 363 176 25 chr13 97426877 97427555 -4445614 + L2 LINE L2 2485 3256 -16 363 320 79 6 chr13 97428162 97428340 -4444829 + L2 LINE L2 3123 3313 0 24 0 0 0 chr13 97428573 97428597 -4444572 + AT_rich Low_complexity Low_complexity 1 24 0 628 286 87 47 chr13 97428706 97429132 -4444037 + MLT1J1 LTR MaLR 4 446 0 37 93 0 0 chr13 97430101 97430208 -4442961 + GC_rich Low_complexity Low_complexity 1 107 0 21 82 0 0 chr13 97430437 97430486 -4442683 + GC_rich Low_complexity Low_complexity 1 49 0 219 36 0 0 chr13 97430554 97430582 -4442587 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 0 0 0 chr13 97430658 97430682 -4442487 + GC_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr13 97430865 97430900 -4442269 + GC_rich Low_complexity Low_complexity 1 35 0 262 311 11 0 chr13 97431033 97431123 -4442046 - MER58 DNA MER1_type -121 94 4 306 347 32 63 chr13 97431974 97432164 -4441005 - MER5A DNA MER1_type -3 186 3 186 330 75 21 chr13 97432383 97432477 -4440692 + L2 LINE L2 3197 3295 -18 636 173 91 0 chr13 97433314 97433424 -4439745 + FLAM_C SINE Alu 1 120 -23 282 289 18 24 chr13 97433971 97434137 -4439032 + CT-rich Low_complexity Low_complexity 2 166 0 3544 237 40 24 chr13 97434513 97435663 -4437506 + Charlie1a DNA MER1_type 7 1174 -281 21 0 0 0 chr13 97436169 97436190 -4436979 + AT_rich Low_complexity Low_complexity 1 21 0 789 176 8 0 chr13 97437662 97437793 -4435376 - FRAM SINE Alu -47 129 1 321 26 0 0 chr13 97437793 97437831 -4435338 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 370 75 101 6 chr13 97438039 97438198 -4434971 + (TA)n Simple_repeat Simple_repeat 1 174 0 42 0 0 0 chr13 97438198 97438240 -4434929 + AT_rich Low_complexity Low_complexity 1 42 0 348 113 82 0 chr13 97438240 97438501 -4434668 + (TA)n Simple_repeat Simple_repeat 1 282 0 368 256 0 0 chr13 97439563 97439649 -4433520 - MER58B DNA MER1_type -3 338 253 183 224 52 52 chr13 97439659 97439717 -4433452 - MIR SINE MIR -195 67 10 842 218 21 75 chr13 97439759 97439998 -4433171 - MIR SINE MIR -30 232 7 202 226 38 0 chr13 97440237 97440290 -4432879 - MIR SINE MIR -4 258 204 1813 100 0 58 chr13 97440584 97440845 -4432324 - AluSq SINE Alu -67 246 1 28 48 0 0 chr13 97440863 97440905 -4432264 + AT_rich Low_complexity Low_complexity 1 42 0 374 181 13 32 chr13 97441535 97441690 -4431479 + (TA)n Simple_repeat Simple_repeat 2 153 0 304 221 11 42 chr13 97441705 97441800 -4431369 - L1MC4 LINE L1 -1339 6703 6612 399 11 102 0 chr13 97441800 97441888 -4431281 + (TA)n Simple_repeat Simple_repeat 1 97 0 200 206 0 0 chr13 97442213 97442247 -4430922 + (CATATA)n Simple_repeat Simple_repeat 6 39 0 220 313 50 12 chr13 97442587 97442667 -4430502 - L2 LINE L2 0 3313 3231 30 0 0 0 chr13 97442903 97442933 -4430236 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr13 97443660 97443694 -4429475 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2167 103 21 0 chr13 97446242 97446533 -4426636 - AluSg SINE Alu -13 297 1 319 361 39 14 chr13 97447331 97447539 -4425630 + L2 LINE L2 2839 3051 -221 233 294 204 25 chr13 97448652 97448853 -4424316 + MIR SINE MIR 7 243 -19 227 333 42 25 chr13 97448885 97449005 -4424164 + L2 LINE L2 3192 3313 0 375 311 140 59 chr13 97449181 97449931 -4423238 + L1M4 LINE L1 2230 3040 -3106 2373 99 51 17 chr13 97450333 97450685 -4422484 + THE1B LTR MaLR 1 364 0 270 204 0 0 chr13 97450962 97451011 -4422158 - L2 LINE L2 -3 3310 3262 218 176 20 0 chr13 97451178 97451229 -4421940 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 339 333 88 5 chr13 97451644 97451836 -4421333 - HAL1 LINE L1 -1189 1318 1111 1268 283 49 13 chr13 97452418 97452605 -4420564 - MER119 DNA MER1_type 0 583 404 195 69 0 0 chr13 97452605 97452634 -4420535 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1268 283 49 13 chr13 97452634 97452973 -4420196 - MER119 DNA MER1_type -179 404 38 406 394 6 0 chr13 97455989 97456159 -4417010 + MIR3 SINE MIR 38 208 0 270 337 166 27 chr13 97456226 97456594 -4416575 + L2 LINE L2 1971 2389 -925 237 391 33 7 chr13 97456591 97456746 -4416423 + L2 LINE L2 2612 2770 -544 * 361 274 66 4 chr13 97456829 97457402 -4415767 - L1ME1 LINE L1 -24 6142 5560 373 315 9 0 chr13 97457655 97457766 -4415403 - MER97b DNA MER1_type? -4 1049 938 31 0 0 0 chr13 97457771 97457802 -4415367 + AT_rich Low_complexity Low_complexity 1 31 0 658 72 66 0 chr13 97457802 97457968 -4415201 + (TA)n Simple_repeat Simple_repeat 1 177 0 297 341 44 0 chr13 97459125 97459216 -4413953 - L2 LINE L2 -8 3264 3170 2991 107 113 17 chr13 97459431 97459909 -4413260 + MER1A DNA MER1_type 1 524 -5 186 231 0 19 chr13 97459992 97460044 -4413125 + L2 LINE L2 3262 3312 -1 351 0 0 0 chr13 97460425 97460464 -4412705 + (CA)n Simple_repeat Simple_repeat 1 39 0 365 286 0 0 chr13 97460516 97460621 -4412548 + L1MC5 LINE L1 7799 7903 -58 2235 104 3 0 chr13 97461503 97461802 -4411367 - AluSg SINE Alu -10 300 1 1001 90 0 0 chr13 97463099 97463221 -4409948 + AluSg SINE Alu 1 122 -188 1430 92 0 10 chr13 97463269 97463464 -4409705 + AluSg SINE Alu 111 303 -7 1781 178 24 18 chr13 97463480 97463781 -4409388 + MER47A DNA MER2_type 30 335 -1988 1884 116 212 3 chr13 97463781 97464135 -4409034 - MSTA LTR MaLR 0 428 1 1781 178 24 18 chr13 97464135 97464165 -4409004 + MER47A DNA MER2_type 335 363 -3 233 301 54 11 chr13 97464884 97464977 -4408192 - L2 LINE L2 -5 3267 3171 322 320 64 39 chr13 97465072 97465228 -4407941 + MIR3 SINE MIR 41 200 -8 310 325 13 0 chr13 97466592 97466699 -4406470 + MIR SINE MIR 15 125 -83 970 241 62 60 chr13 97466817 97467203 -4405966 - MLT1B LTR MaLR 0 390 4 198 103 0 0 chr13 97467517 97467546 -4405623 + (TGAG)n Simple_repeat Simple_repeat 2 30 0 230 239 0 39 chr13 97467580 97467735 -4405434 + (TGAG)n Simple_repeat Simple_repeat 2 150 0 192 102 61 0 chr13 97468590 97468639 -4404530 + (TATAA)n Simple_repeat Simple_repeat 1 52 0 288 77 0 0 chr13 97470260 97470299 -4402870 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 183 42 0 0 chr13 97475048 97475072 -4398097 + (CAA)n Simple_repeat Simple_repeat 1 24 0 331 229 189 29 chr13 97475197 97475372 -4397797 + MIR SINE MIR 59 261 -1 221 248 94 43 chr13 97476042 97476159 -4397010 - MIR SINE MIR -74 188 66 295 277 119 40 chr13 97476309 97476511 -4396658 + MLT1K LTR MaLR 151 368 -220 520 235 67 39 chr13 97476571 97476750 -4396419 + MER5A DNA MER1_type 6 189 0 26 30 0 0 chr13 97476860 97476893 -4396276 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr13 97477798 97477825 -4395344 + (TG)n Simple_repeat Simple_repeat 1 27 0 183 283 0 0 chr13 97477936 97477982 -4395187 - L2 LINE L2 0 3272 3227 1912 158 7 0 chr13 97480142 97480452 -4392717 + AluSx SINE Alu 1 312 0 255 333 14 7 chr13 97481265 97481409 -4391760 - MLT1L LTR MaLR -33 582 438 214 354 0 13 chr13 97481790 97481869 -4391300 + L3 LINE CR1 1500 1577 0 5090 118 111 27 chr13 97481881 97483352 -4389817 - pTR5 LTR ERV1 0 2438 280 275 302 89 43 chr13 97483359 97483617 -4389552 - L2 LINE L2 -13 3300 3031 2014 125 20 0 chr13 97484806 97485101 -4388068 + AluSx SINE Alu 1 301 -11 2099 118 17 0 chr13 97485695 97485991 -4387178 + AluSx SINE Alu 1 301 -11 630 230 156 41 chr13 97489430 97489700 -4383469 - MLT1H LTR MaLR -248 301 1 201 194 28 28 chr13 97489928 97489962 -4383207 + (TTTAA)n Simple_repeat Simple_repeat 1 34 -38 1739 148 32 21 chr13 97489962 97490245 -4382924 + AluJo SINE Alu 1 286 -26 201 194 28 28 chr13 97490245 97490282 -4382887 + (TTTAA)n Simple_repeat Simple_repeat 33 72 0 2286 113 0 3 chr13 97490545 97490855 -4382314 + AluSg SINE Alu 1 309 -1 356 263 60 68 chr13 97491802 97492186 -4380983 - L2 LINE L2 -639 2675 2295 383 247 193 7 chr13 97493218 97493368 -4379801 + MER5A DNA MER1_type 11 188 -1 1421 177 20 37 chr13 97493372 97493492 -4379677 + AluJo SINE Alu 6 126 -225 2405 93 0 0 chr13 97493492 97493783 -4379386 - AluSg SINE Alu -19 291 1 1421 177 20 37 chr13 97493783 97494013 -4379156 + AluJo SINE Alu 126 351 0 2496 71 3 3 chr13 97495167 97495477 -4377692 - AluSp SINE Alu -3 310 1 571 327 25 24 chr13 97495591 97495821 -4377348 + MIR SINE MIR 13 242 -20 24 0 0 0 chr13 97497034 97497058 -4376111 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr13 97497061 97497081 -4376088 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 222 150 0 0 chr13 97497417 97497457 -4375712 + (T)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr13 97498272 97498292 -4374877 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 25 0 0 0 chr13 97499883 97499908 -4373261 + AT_rich Low_complexity Low_complexity 1 25 0 2134 128 0 3 chr13 97499909 97500198 -4372971 - AluSx SINE Alu -24 288 1 295 259 18 0 chr13 97501062 97501174 -4371995 + GA-rich Low_complexity Low_complexity 3 116 0 778 226 131 10 chr13 97505159 97505358 -4367811 + MER58A DNA MER1_type 1 223 -1 22 0 0 0 chr13 97506674 97506696 -4366473 + AT_rich Low_complexity Low_complexity 1 22 0 182 158 35 123 chr13 97507168 97507225 -4365944 + L3b LINE CR1 1286 1337 -246 2192 120 0 0 chr13 97509400 97509709 -4363460 - AluSg SINE Alu -1 309 1 201 264 58 58 chr13 97510544 97510631 -4362538 + MIR SINE MIR 103 189 -73 522 210 85 80 chr13 97511045 97511269 -4361900 + L2 LINE L2 2813 3037 -276 22 0 0 0 chr13 97512978 97513000 -4360169 + AT_rich Low_complexity Low_complexity 1 22 0 2713 13 0 0 chr13 97514366 97514672 -4358497 - AluYb8 SINE Alu -12 306 1 181 282 26 26 chr13 97515629 97515707 -4357462 + MIR SINE MIR 63 140 -68 274 353 37 43 chr13 97516268 97516455 -4356714 + MIR SINE MIR 1 186 -76 2187 94 0 3 chr13 97516788 97517086 -4356083 - AluSq SINE Alu -6 307 11 414 0 0 0 chr13 97517432 97517478 -4355691 + (CA)n Simple_repeat Simple_repeat 2 47 0 1966 116 0 28 chr13 97517547 97517865 -4355304 + AluSg SINE Alu 2 310 0 394 299 50 55 chr13 97520113 97520314 -4352855 - MIR SINE MIR -55 207 8 468 282 27 20 chr13 97523032 97523181 -4349988 - MER5B DNA MER1_type 0 178 29 605 274 11 16 chr13 97523193 97523379 -4349790 + MER5A DNA MER1_type 5 189 0 222 196 0 0 chr13 97524199 97524245 -4348924 + (CGG)n Simple_repeat Simple_repeat 1 46 0 298 274 8 17 chr13 97524874 97524991 -4348178 + (CGG)n Simple_repeat Simple_repeat 2 117 0 225 0 0 0 chr13 97525929 97525954 -4347215 + (CGG)n Simple_repeat Simple_repeat 1 25 0 185 108 27 0 chr13 97526898 97526935 -4346234 + (CCG)n Simple_repeat Simple_repeat 2 39 0 37 93 0 0 chr13 97527492 97527599 -4345570 + GC_rich Low_complexity Low_complexity 1 107 0 32 26 0 0 chr13 97528733 97528772 -4344397 + GC_rich Low_complexity Low_complexity 1 39 0 209 108 14 95 chr13 97528918 97528992 -4344177 + (CGGGGG)n Simple_repeat Simple_repeat 6 73 0 23 0 0 0 chr13 97529963 97529986 -4343183 + AT_rich Low_complexity Low_complexity 1 23 0 292 298 0 0 chr13 97530422 97530516 -4342653 + (TG)n Simple_repeat Simple_repeat 2 95 0 200 262 0 0 chr13 97535904 97535946 -4337223 - MIR SINE MIR -7 255 214 869 299 94 23 chr13 97535992 97536426 -4336743 + LTR40c LTR ERVL 1 465 0 1035 269 115 34 chr13 97536899 97537480 -4335689 + L1MC4a LINE L1 5288 5915 -1893 491 311 159 26 chr13 97537804 97538113 -4335056 - L2 LINE L2 -933 2381 2032 1963 138 3 10 chr13 97538654 97538959 -4334210 - AluSx SINE Alu -9 303 1 190 286 24 48 chr13 97539859 97539943 -4333226 + MIR SINE MIR 180 261 -1 291 197 0 0 chr13 97541073 97541134 -4332035 + L1MB5 LINE L1 6095 6155 -19 22 56 0 0 chr13 97541223 97541259 -4331910 + AT_rich Low_complexity Low_complexity 1 36 0 369 248 45 15 chr13 97541820 97541953 -4331216 - L1ME4a LINE L1 -273 5831 5695 275 343 66 7 chr13 97542011 97542148 -4331021 + L2 LINE L2 2422 2566 -748 759 219 81 48 chr13 97542634 97542844 -4330325 - L1MB7 LINE L1 -17 6167 5951 905 304 113 31 chr13 97543313 97544084 -4329085 - L1ME4a LINE L1 -945 5184 4261 2486 33 3 10 chr13 97544084 97544388 -4328781 - AluY SINE Alu -9 302 1 905 304 113 31 chr13 97544388 97544920 -4328249 - L1ME4a LINE L1 -1868 4261 3774 435 230 43 43 chr13 97545297 97545458 -4327711 - L1ME4a LINE L1 -5953 166 6 321 345 83 19 chr13 97546997 97547408 -4325761 - L1MB7 LINE L1 -304 5817 5381 376 321 211 23 chr13 97547441 97547834 -4325335 - L1MB7 LINE L1 -816 5330 4864 435 300 37 8 chr13 97547846 97548075 -4325094 + L1ME3 LINE L1 5571 5811 -351 1728 100 0 58 chr13 97548637 97548898 -4324271 + AluSq SINE Alu 1 246 -67 259 220 44 44 chr13 97548918 97549009 -4324160 + MLT1K LTR MaLR 483 573 -15 199 226 38 0 chr13 97549192 97549245 -4323924 + MIR SINE MIR 204 258 -4 866 218 21 75 chr13 97549484 97549723 -4323446 + MIR SINE MIR 7 232 -30 180 241 52 52 chr13 97549765 97549823 -4323346 + MIR SINE MIR 10 67 -195 407 256 0 0 chr13 97549833 97549919 -4323250 + MER58B DNA MER1_type 253 338 -3 401 395 45 16 chr13 97550947 97551190 -4321979 + MIR SINE MIR 13 262 0 442 338 42 63 chr13 97551197 97551576 -4321593 - L2 LINE L2 -4 3268 2898 1411 205 7 0 chr13 97554114 97554387 -4318782 + L1MA3 LINE L1 6026 6300 -5 260 323 43 24 chr13 97554924 97555088 -4318081 + ERVL LTR ERVL 469 635 -4361 1513 311 91 55 chr13 97556104 97556348 -4316821 + ERVL LTR ERVL 1894 2128 -3357 1132 173 23 27 chr13 97556348 97556568 -4316601 + MER20 DNA MER1_type 1 219 0 1513 311 91 55 chr13 97556568 97557376 -4315793 + ERVL LTR ERVL 2128 2984 -2501 1507 243 87 38 chr13 97557502 97558091 -4315078 + L1MC5 LINE L1 6924 7541 -420 313 306 44 55 chr13 97558095 97558278 -4314891 + L1ME3 LINE L1 5935 6115 -47 569 263 172 42 chr13 97562063 97562470 -4310699 + L2 LINE L2 937 1396 -1918 1271 229 100 8 chr13 97562471 97562851 -4310318 - MLT1C LTR MaLR -47 420 6 201 213 262 0 chr13 97562854 97562915 -4310254 + L2 LINE L2 2912 2988 -325 40407 76 8 5 chr13 97564820 97569101 -4304068 - L1PA6 LINE L1 0 6154 1847 2295 103 0 0 chr13 97569101 97569412 -4303757 - AluY SINE Alu 0 311 1 40407 76 8 5 chr13 97569412 97571265 -4301904 - L1PA6 LINE L1 -4307 1847 1 310 284 45 0 chr13 97571623 97571711 -4301458 + MIR SINE MIR 73 164 -98 204 240 0 0 chr13 97571877 97571927 -4301242 + (TA)n Simple_repeat Simple_repeat 2 51 0 191 315 0 0 chr13 97572043 97572097 -4301072 - MIR SINE MIR -69 139 86 21 71 0 0 chr13 97572962 97573004 -4300165 + AT_rich Low_complexity Low_complexity 1 42 0 2777 133 6 2 chr13 97573297 97573763 -4299406 - L1P LINE L1 -2855 3291 2824 6719 73 16 7 chr13 97573770 97574888 -4298281 + L1PA8A LINE L1 5008 6128 -3 567 261 92 4 chr13 97575514 97575774 -4297395 - L1MD2 LINE L1 0 6359 6022 180 0 0 0 chr13 97577045 97577065 -4296104 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 313 309 31 57 chr13 97578976 97579170 -4293999 - MIR SINE MIR -43 219 31 1866 97 23 0 chr13 97579547 97579804 -4293365 + L1MA1 LINE L1 6036 6298 -4 29 0 0 0 chr13 97579804 97579833 -4293336 + AT_rich Low_complexity Low_complexity 1 29 0 202 264 184 0 chr13 97580526 97580613 -4292556 + MIR SINE MIR 36 138 -70 225 0 0 0 chr13 97583048 97583073 -4290096 + (CA)n Simple_repeat Simple_repeat 2 26 0 2025 111 21 4 chr13 97583375 97583683 -4289486 + AluSx SINE Alu 1 313 0 197 279 139 0 chr13 97584171 97584250 -4288919 + MIR3 SINE MIR 108 197 -11 2436 230 28 18 chr13 97585332 97585901 -4287268 - L1MC2 LINE L1 -22 6322 5748 375 326 38 16 chr13 97587157 97587343 -4285826 - MIR SINE MIR -67 141 5 22 35 0 0 chr13 97587421 97587450 -4285719 + AT_rich Low_complexity Low_complexity 1 29 0 813 280 51 35 chr13 97591141 97591551 -4281618 + L1MC/D LINE L1 5170 5572 -828 2175 41 0 0 chr13 97591551 97591796 -4281373 - L1PA5 LINE L1 -3 6151 5907 2213 75 0 0 chr13 97591796 97592063 -4281106 - AluY SINE Alu -13 298 32 813 280 51 35 chr13 97592063 97592127 -4281042 + L1MC/D LINE L1 5571 5656 -744 2506 117 22 6 chr13 97592307 97592499 -4280670 - THE1B LTR MaLR 0 364 162 345 47 0 0 chr13 97592499 97592542 -4280627 + (TG)n Simple_repeat Simple_repeat 2 44 0 2506 117 22 6 chr13 97592542 97592707 -4280462 - THE1B LTR MaLR -202 162 1 2191 105 0 3 chr13 97593637 97593950 -4279219 + AluSq SINE Alu 1 312 0 1879 138 7 11 chr13 97594250 97594573 -4278596 - AluSx SINE Alu 0 322 1 355 323 86 46 chr13 97594784 97594933 -4278236 - HAL1b LINE L1 -674 674 532 2532 142 64 16 chr13 97594933 97595357 -4277812 + MER65A LTR ERV1 1 444 -1 355 323 86 46 chr13 97595357 97595640 -4277529 - HAL1b LINE L1 -816 532 225 4132 112 0 9 chr13 97596390 97596969 -4276200 + L1PB1 LINE L1 5575 6148 -3 292 319 52 9 chr13 97598220 97598336 -4274833 - MER5B DNA MER1_type -54 124 4 207 287 184 40 chr13 97598390 97598613 -4274556 - L2 LINE L2 -498 2816 2562 409 348 46 35 chr13 97598926 97599274 -4273895 - L2 LINE L2 -1004 2310 1959 253 253 46 23 chr13 97599297 97599384 -4273785 - MER5A DNA MER1_type -65 124 36 1683 143 0 53 chr13 97599557 97599857 -4273312 + LTR8 LTR ERV1 304 587 -104 3008 197 73 21 chr13 97600015 97600312 -4272857 + L1MB3 LINE L1 5447 5727 -456 2111 144 0 0 chr13 97600312 97600617 -4272552 + AluSx SINE Alu 1 305 -7 3008 197 73 21 chr13 97600617 97601018 -4272151 + L1MB3 LINE L1 5727 6181 -2 464 158 109 48 chr13 97602088 97602278 -4270891 - MLT1D LTR MaLR -70 435 166 230 231 22 66 chr13 97602424 97602515 -4270654 - MLT1D LTR MaLR -539 87 1 400 115 13 13 chr13 97602528 97602606 -4270563 + (TA)n Simple_repeat Simple_repeat 2 79 0 233 325 100 12 chr13 97602695 97602775 -4270394 + L2 LINE L2 3128 3214 -58 2180 111 13 0 chr13 97603166 97603464 -4269705 + AluSg SINE Alu 1 302 -8 432 304 88 7 chr13 97603563 97603711 -4269458 - MIR SINE MIR -40 222 63 206 314 100 82 chr13 97604784 97605125 -4268044 - L2 LINE L2 -97 3175 2829 2425 285 98 32 chr13 97605692 97606474 -4266695 + L1M4 LINE L1 2666 3395 -2751 339 25 0 0 chr13 97606474 97606514 -4266655 + (CA)n Simple_repeat Simple_repeat 1 40 0 2425 285 98 32 chr13 97606514 97607455 -4265714 + L1M4 LINE L1 3395 4502 -1644 273 167 39 13 chr13 97607469 97607547 -4265622 + (TA)n Simple_repeat Simple_repeat 1 80 0 812 257 97 46 chr13 97607552 97608122 -4265047 + L1M1 LINE L1 4899 5496 -680 2225 139 0 0 chr13 97608169 97608479 -4264690 + AluSx SINE Alu 1 310 -2 236 100 25 0 chr13 97608479 97608519 -4264650 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 1176 276 45 15 chr13 97608615 97609074 -4264095 + L1ME3A LINE L1 5593 6165 -5 360 119 0 0 chr13 97609137 97609196 -4263973 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 731 155 30 0 chr13 97609196 97609372 -4263797 + (TCTA)n Simple_repeat Simple_repeat 1 181 0 1874 210 50 19 chr13 97609377 97609800 -4263369 - MLT1C LTR MaLR 0 467 32 245 333 0 0 chr13 97610629 97610722 -4262447 + MIR SINE MIR 157 249 -13 665 248 12 0 chr13 97612943 97613104 -4260065 + L1MB1 LINE L1 6005 6167 -1 187 333 48 0 chr13 97613114 97613198 -4259971 - L2 LINE L2 -235 3037 2950 191 365 234 0 chr13 97613216 97613323 -4259846 + L2 LINE L2 3139 3270 -2 297 201 0 38 chr13 97613338 97613497 -4259672 + (TA)n Simple_repeat Simple_repeat 1 153 0 261 0 0 0 chr13 97614950 97614979 -4258190 + (A)n Simple_repeat Simple_repeat 1 29 0 290 271 62 31 chr13 97615425 97615521 -4257648 + LTR16C LTR ERVL 393 491 0 950 120 0 27 chr13 97617311 97617495 -4255674 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 892 254 111 80 chr13 97619537 97620112 -4253057 - MLT1G1 LTR MaLR 0 595 3 1853 173 33 3 chr13 97620158 97620493 -4252676 + MLT1A1 LTR MaLR 13 357 -8 2149 110 0 58 chr13 97621385 97621711 -4251458 + AluSx SINE Alu 1 307 -5 2244 101 0 16 chr13 97621711 97622027 -4251142 + AluY SINE Alu 1 311 0 188 324 0 40 chr13 97623655 97623729 -4249440 - L2 LINE L2 -5 3267 3197 402 290 168 7 chr13 97624928 97625083 -4248086 - MER5A DNA MER1_type -6 183 4 205 180 49 0 chr13 97626831 97626892 -4246277 + (TTATA)n Simple_repeat Simple_repeat 5 68 0 350 314 52 35 chr13 97626932 97627104 -4246065 + MER5B DNA MER1_type 1 175 -3 363 311 101 0 chr13 97627363 97627482 -4245687 - L2 LINE L2 -5 3267 3137 681 203 88 64 chr13 97628078 97628279 -4244890 - MIR SINE MIR -60 202 6 194 235 132 29 chr13 97628933 97629001 -4244168 + MIR3 SINE MIR 113 187 -21 6339 117 17 2 chr13 97629212 97629434 -4243735 + L1PA15 LINE L1 4247 4464 -1701 1987 134 0 0 chr13 97629434 97629744 -4243425 + AluSg SINE Alu 3 312 0 6339 117 17 2 chr13 97629744 97630289 -4242880 + L1PA15 LINE L1 4464 5000 -1165 2143 65 0 4 chr13 97630289 97630549 -4242620 + AluY SINE Alu 34 292 -19 6339 117 17 2 chr13 97630549 97631694 -4241475 + L1PA15 LINE L1 5000 6164 -1 3059 122 71 90 chr13 97632024 97632646 -4240523 - MER4B LTR ERV1 0 610 1 233 286 0 107 chr13 97632646 97632752 -4240417 - L2 LINE L2 -8 3264 3171 382 36 0 71 chr13 97632782 97632838 -4240331 - MLT2A2 LTR ERVL 0 453 402 597 128 16 64 chr13 97632839 97633026 -4240143 + (TA)n Simple_repeat Simple_repeat 2 179 0 825 136 102 0 chr13 97633052 97633199 -4239970 - Tigger3(Golem) DNA MER2_type -117 2912 2751 189 107 0 0 chr13 97633199 97633227 -4239942 + (TA)n Simple_repeat Simple_repeat 2 29 0 198 192 0 0 chr13 97633357 97633409 -4239760 + (TA)n Simple_repeat Simple_repeat 2 53 0 2913 74 19 5 chr13 97633523 97633901 -4239268 - MLT2A1 LTR ERVL -61 383 1 282 304 39 81 chr13 97633906 97634238 -4238931 + MLT1I LTR MaLR 79 396 -13 1132 293 103 90 chr13 97634251 97635179 -4237990 - L2 LINE L2 -85 3228 2273 1633 171 57 23 chr13 97635179 97635478 -4237691 + AluJo SINE Alu 1 309 -3 1132 293 103 90 chr13 97635478 97635936 -4237233 - L2 LINE L2 -1040 2273 1822 1553 103 32 5 chr13 97635985 97636198 -4236971 + L1ME1 LINE L1 5561 5767 -397 6297 153 76 11 chr13 97636198 97636700 -4236469 - Tigger3b DNA MER2_type -1797 1231 763 2035 137 0 13 chr13 97636700 97637013 -4236156 - AluSx SINE Alu -1 311 3 6297 153 76 11 chr13 97637013 97637180 -4235989 - Tigger3b DNA MER2_type -2265 763 608 327 78 0 0 chr13 97637180 97637231 -4235938 + (CA)n Simple_repeat Simple_repeat 2 52 0 6297 153 76 11 chr13 97637231 97637716 -4235453 - Tigger3b DNA MER2_type -2420 608 1 1553 103 32 5 chr13 97637716 97637955 -4235214 + L1ME1 LINE L1 5767 6025 -139 850 235 23 5 chr13 97637957 97638174 -4234995 - L1ME LINE L1 -689 5475 5255 243 213 25 0 chr13 97638297 97638377 -4234792 + (TA)n Simple_repeat Simple_repeat 2 83 0 987 197 87 21 chr13 97639427 97639764 -4233405 + MSTD LTR MaLR 1 396 0 2440 87 0 0 chr13 97640844 97641156 -4232013 + AluSx SINE Alu 1 312 0 748 172 18 0 chr13 97641629 97641792 -4231377 + CT-rich Low_complexity Low_complexity 1 166 0 231 277 10 50 chr13 97643247 97643348 -4229821 + HAL1b LINE L1 328 424 -924 2270 110 0 3 chr13 97643512 97643813 -4229356 + AluSx SINE Alu 1 300 -12 327 338 54 25 chr13 97644212 97644416 -4228753 + L1MC/D LINE L1 5564 5773 -2035 1004 224 124 49 chr13 97646055 97646507 -4226662 + MLT1G LTR MaLR 1 554 -36 1870 196 38 28 chr13 97646520 97646815 -4226354 + MLT1C LTR MaLR 1 341 -126 2065 137 161 11 chr13 97646815 97647187 -4225982 + MSTA LTR MaLR 1 428 0 1870 196 38 28 chr13 97647187 97647316 -4225853 + MLT1C LTR MaLR 341 467 0 425 336 99 49 chr13 97647346 97647751 -4225418 - L3 LINE CR1 -768 809 385 1722 213 10 29 chr13 97648170 97648587 -4224582 + L1MD3 LINE L1 7564 7972 -23 236 281 35 0 chr13 97648697 97648754 -4224415 - L2 LINE L2 -5 3267 3209 266 236 56 11 chr13 97648876 97648965 -4224204 + L3 LINE CR1 910 1002 -575 845 155 0 0 chr13 97649158 97649287 -4223882 - L1PB3 LINE L1 -7 6147 6019 1992 135 3 45 chr13 97649472 97649783 -4223386 - AluSx SINE Alu -14 298 1 1976 132 164 34 chr13 97649867 97650246 -4222923 - MSTA LTR MaLR 0 428 1 585 216 189 11 chr13 97650356 97650541 -4222628 + MER20 DNA MER1_type 1 218 -1 390 237 52 37 chr13 97650966 97651101 -4222068 + Charlie4 DNA MER1_type 1819 1955 -6 605 335 114 4 chr13 97652596 97652823 -4220346 + MIR SINE MIR 6 257 -5 2347 103 0 0 chr13 97652946 97653256 -4219913 + AluY SINE Alu 1 310 -1 793 98 0 0 chr13 97653272 97653374 -4219795 + AluSq/x SINE Alu 2 103 -209 1694 122 0 24 chr13 97653387 97653642 -4219527 + AluSx SINE Alu 64 312 0 257 128 21 0 chr13 97654842 97654889 -4218280 + (TA)n Simple_repeat Simple_repeat 2 49 0 4359 178 15 17 chr13 97655824 97656631 -4216538 + L1MB1 LINE L1 5335 6139 -29 296 213 27 13 chr13 97656771 97656846 -4216323 + MLT1C LTR MaLR 1 76 -314 * 692 150 0 16 chr13 97656841 97656968 -4216201 + 7SK RNA RNA 1 125 -68 460 164 0 0 chr13 97657004 97657077 -4216092 + 7SK RNA RNA 121 193 0 * 1548 216 96 5 chr13 97657070 97657454 -4215715 + MLT1C LTR MaLR 49 467 0 654 299 35 38 chr13 97657883 97658144 -4215025 - LTR16C LTR ERVL -4 487 228 2397 72 3 13 chr13 97658335 97658641 -4214528 - AluY SINE Alu -8 303 1 217 384 80 16 chr13 97659130 97659255 -4213914 - L2 LINE L2 0 3272 3140 2020 129 41 0 chr13 97661077 97661372 -4211797 + AluSx SINE Alu 3 309 -3 2109 132 0 26 chr13 97663049 97663353 -4209816 - AluSx SINE Alu -16 296 1 239 138 0 69 chr13 97663617 97663675 -4209494 - MADE1 DNA Mariner 0 80 27 302 51 0 0 chr13 97664527 97664566 -4208603 + MADE1 DNA Mariner 42 80 0 561 311 44 47 chr13 97664765 97665086 -4208083 + Charlie2b DNA MER1_type 509 828 -1954 * 3524 201 101 34 chr13 97665083 97666247 -4206922 + Charlie2a DNA MER1_type 1620 2861 -1 194 254 97 35 chr13 97667354 97667468 -4205701 - L2 LINE L2 -152 3161 3041 794 258 48 18 chr13 97669224 97669453 -4203716 + L1MC4a LINE L1 6339 6574 -1234 4343 258 62 14 chr13 97669497 97671108 -4202061 + L1ME1 LINE L1 2495 4183 -2357 1572 264 23 17 chr13 97671129 97671599 -4201570 + L1ME1 LINE L1 6085 6557 -3 349 299 164 26 chr13 97671600 97671904 -4201265 + L1MC4a LINE L1 3357 3702 -2838 290 270 17 112 chr13 97672606 97672847 -4200322 + L1MC4a LINE L1 4462 4679 -1861 21 82 0 0 chr13 97673100 97673149 -4200020 + AT_rich Low_complexity Low_complexity 1 49 0 310 368 61 10 chr13 97673161 97673457 -4199712 + L1MC4a LINE L1 5334 5644 -896 289 307 127 6 chr13 97673466 97673632 -4199537 + L1MC4a LINE L1 5653 5838 -2364 225 228 18 0 chr13 97673644 97673701 -4199468 + L1MC4a LINE L1 7105 7162 -1040 1348 89 0 0 chr13 97673701 97673880 -4199289 + AluSg/x SINE Alu 127 305 -7 23 0 0 0 chr13 97674487 97674510 -4198659 + AT_rich Low_complexity Low_complexity 1 23 0 205 170 85 0 chr13 97674585 97674632 -4198537 + T-rich Low_complexity Low_complexity 2 52 0 275 303 7 42 chr13 97674873 97675015 -4198154 + L1M4 LINE L1 2676 2812 -3334 383 274 154 34 chr13 97675635 97675927 -4197242 + L1M4 LINE L1 3622 3948 -2198 277 256 189 61 chr13 97676133 97676508 -4196661 - MLT1H LTR MaLR -18 531 109 26 0 0 0 chr13 97676637 97676663 -4196506 + AT_rich Low_complexity Low_complexity 1 26 0 6838 84 9 8 chr13 97676954 97678619 -4194550 - L1PA14 LINE L1 0 6161 4499 417 231 0 0 chr13 97678859 97678937 -4194232 - MER94 DNA DNA -55 79 2 1879 193 17 3 chr13 97679094 97679467 -4193702 + MLT2C1 LTR ERVL 1 491 -24 394 123 0 0 chr13 97679923 97679980 -4193189 - MLT2C2 LTR ERVL 0 520 464 226 122 0 0 chr13 97679964 97680005 -4193164 - LTR66 LTR ERVL -176 434 394 * 374 132 0 15 chr13 97680013 97680081 -4193088 + (TA)n Simple_repeat Simple_repeat 2 68 0 972 82 0 0 chr13 97680208 97680343 -4192826 + (TA)n Simple_repeat Simple_repeat 1 135 0 1830 201 21 0 chr13 97680346 97680684 -4192485 - MLT2C2 LTR ERVL -48 416 72 332 221 131 16 chr13 97680731 97680853 -4192316 + MIR SINE MIR 26 161 -101 346 268 63 41 chr13 97682628 97682921 -4190248 - MLT1H LTR MaLR 0 549 188 348 118 71 59 chr13 97682981 97683066 -4190103 - MLT1H LTR MaLR -463 86 1 222 337 36 12 chr13 97683098 97683181 -4189988 - L2 LINE L2 -159 3113 3029 375 345 63 61 chr13 97683778 97684648 -4188521 + L2 LINE L2 1536 2407 -907 201 270 0 0 chr13 97684652 97684741 -4188428 + CT-rich Low_complexity Low_complexity 3 91 0 1712 154 45 7 chr13 97685141 97685427 -4187742 + AluSx SINE Alu 1 297 -15 414 172 16 117 chr13 97685481 97685609 -4187560 + MLT1E1 LTR MaLR 51 165 -428 1354 255 42 0 chr13 97685666 97685976 -4187193 + MLT1E1 LTR MaLR 332 654 0 474 200 18 36 chr13 97686956 97687066 -4186103 + Charlie2 DNA MER1_type 41 148 -2714 229 254 55 0 chr13 97687093 97687148 -4186021 + Charlie2 DNA MER1_type 230 287 -2495 4757 96 14 6 chr13 97687148 97687787 -4185382 + L1PA13 LINE L1 5520 6163 0 1645 203 14 30 chr13 97687889 97688115 -4185054 - MLT1A1 LTR MaLR -6 359 140 2961 99 0 0 chr13 97688115 97688479 -4184690 + THE1B LTR MaLR 1 364 0 1645 203 14 30 chr13 97688479 97688617 -4184552 - MLT1A1 LTR MaLR -225 140 1 553 231 93 22 chr13 97688770 97688952 -4184217 + Charlie2a DNA MER1_type 1468 1662 -1200 1020 225 127 0 chr13 97690055 97690291 -4182878 - MLT1A1 LTR MaLR -99 266 1 462 276 96 75 chr13 97690341 97690728 -4182441 + L3 LINE CR1 583 977 -600 309 315 108 14 chr13 97690770 97691065 -4182104 + L1 LINE L1 4369 4691 -1455 10386 85 5 1 chr13 97691065 97692378 -4180791 + ERVL LTR ERVL 1688 3005 -2649 * 12629 77 3 4 chr13 97692345 97693930 -4179239 + ERVL LTR ERVL 3308 4890 -764 357 132 40 26 chr13 97693908 97693984 -4179185 + ERVL LTR ERVL 3843 3919 -1845 * 2488 116 36 28 chr13 97693998 97694614 -4178555 + ERVL LTR ERVL 4885 5462 -143 244 270 22 11 chr13 97694717 97694806 -4178363 + L1MC4 LINE L1 6614 6703 -1339 443 55 0 0 chr13 97694811 97694866 -4178303 + MLT2A2 LTR ERVL 399 453 0 2665 133 5 0 chr13 97694998 97695396 -4177773 + L1PA16 LINE L1 5569 5968 -198 249 304 122 22 chr13 97695431 97695661 -4177508 + L1MC/D LINE L1 5636 5888 -1920 296 219 12 0 chr13 97695694 97695776 -4177393 + (TA)n Simple_repeat Simple_repeat 2 84 0 1497 213 18 71 chr13 97695778 97696172 -4176997 - MLT2D LTR ERVL -41 373 1 2073 96 0 0 chr13 97696310 97696581 -4176588 - AluSg1 SINE Alu -5 304 34 543 301 95 39 chr13 97696661 97696967 -4176202 + L3 LINE CR1 1097 1419 -158 22 0 0 0 chr13 97697500 97697522 -4175647 + AT_rich Low_complexity Low_complexity 1 22 0 474 221 70 41 chr13 97697600 97697772 -4175397 + MLT1C LTR MaLR 73 249 -300 1759 189 31 106 chr13 97697901 97698374 -4174795 + MER67B LTR ERV1 1 253 -261 2088 154 19 79 chr13 97698374 97698790 -4174379 - MSTD LTR MaLR -2 394 4 1759 189 31 106 chr13 97698790 97699034 -4174135 + MER67B LTR ERV1 253 514 0 236 286 143 0 chr13 97699059 97699150 -4174019 + MLT1H LTR MaLR 445 548 -1 228 317 42 17 chr13 97699330 97699450 -4173719 + MLT1-int LTR MaLR 419 541 -830 360 296 76 0 chr13 97700170 97700302 -4172867 + LTR16A LTR ERVL 1 142 -308 7770 190 5 6 chr13 97700309 97702551 -4170618 - L1PA15 LINE L1 -7 6158 3903 2934 152 23 8 chr13 97702552 97703033 -4170136 - Ricksha DNA DNA -1000 2246 1759 443 221 11 0 chr13 97703078 97703173 -4169996 - Ricksha DNA DNA -3144 102 7 772 226 94 8 chr13 97703175 97703410 -4169759 + MLT1C LTR MaLR 211 465 -2 199 275 55 11 chr13 97706899 97706990 -4166179 - MIR3 SINE MIR -10 198 104 2026 101 55 30 chr13 97707047 97707372 -4165797 + THE1B LTR MaLR 1 401 -27 1752 151 0 57 chr13 97707620 97707938 -4165231 + AluJb SINE Alu 1 300 -12 598 171 107 58 chr13 97708134 97708339 -4164830 - MER20 DNA MER1_type -4 215 1 2242 100 0 0 chr13 97709746 97710026 -4163143 + AluSc SINE Alu 1 316 0 203 28 28 28 chr13 97710026 97710062 -4163107 + (TAAAA)n Simple_repeat Simple_repeat 2 100 0 327 381 74 10 chr13 97710251 97710550 -4162619 - L2 LINE L2 -6 3307 2990 251 323 142 32 chr13 97710708 97711435 -4161734 - L2 LINE L2 -506 2808 2002 307 300 25 17 chr13 97711439 97711559 -4161610 - L2 LINE L2 -2 3311 3191 283 331 37 6 chr13 97711569 97711732 -4161437 - L2 LINE L2 -1311 2003 1836 1965 130 11 11 chr13 97711797 97712081 -4161088 - AluSx SINE Alu -28 284 1 631 372 94 3 chr13 97712096 97712679 -4160490 - L2 LINE L2 -1616 1698 1063 190 158 26 0 chr13 97714365 97714403 -4158766 - MIR SINE MIR -1 261 223 259 277 125 27 chr13 97714418 97714530 -4158639 - L2 LINE L2 -1 3312 3190 328 143 0 0 chr13 97714694 97714743 -4158426 + Charlie5 DNA MER1_type 161 209 -2403 1611 159 22 87 chr13 97716423 97716825 -4156344 + MLT1B LTR MaLR 8 383 -7 2030 124 0 0 chr13 97716986 97717260 -4155909 - AluSx SINE Alu -38 274 1 211 174 0 43 chr13 97718267 97718313 -4154856 - MIR SINE MIR -78 130 87 1934 185 41 39 chr13 97719981 97720441 -4152728 - MLT1C LTR MaLR -6 461 1 583 256 136 47 chr13 97720831 97721089 -4152080 + L1MD3 LINE L1 7009 7289 -706 296 187 173 0 chr13 97721089 97721164 -4152005 + MLT1F1 LTR MaLR 16 103 -464 1896 163 0 7 chr13 97721165 97721472 -4151697 - AluSg SINE Alu -5 305 1 586 194 0 0 chr13 97721474 97721572 -4151597 - AluJo SINE Alu -169 143 46 1431 243 137 13 chr13 97721577 97722111 -4151058 + L1MD3 LINE L1 7396 7995 0 923 85 62 0 chr13 97722123 97722252 -4150917 + AluSp/q SINE Alu 170 306 -7 592 226 102 5 chr13 97722542 97722728 -4150441 - ORSL DNA AcHobo -11 264 61 2010 125 40 0 chr13 97723639 97723936 -4149233 - AluSc SINE Alu 0 309 1 1586 175 44 4 chr13 97724755 97725029 -4148140 + AluJb SINE Alu 6 290 -22 279 0 0 0 chr13 97725125 97725156 -4148013 + (T)n Simple_repeat Simple_repeat 1 31 0 419 308 41 0 chr13 97725553 97725699 -4147470 + MIR SINE MIR 102 253 -9 251 326 54 47 chr13 97727350 97727608 -4145561 + L1ME LINE L1 5563 5822 -299 641 346 86 39 chr13 97731437 97731949 -4141220 + MLT1K LTR MaLR 3 538 -50 22 0 0 0 chr13 97732469 97732491 -4140678 + AT_rich Low_complexity Low_complexity 1 22 0 365 209 0 8 chr13 97732981 97733110 -4140059 + GA-rich Low_complexity Low_complexity 1 128 0 61 27 0 0 chr13 97733774 97733849 -4139320 + AT_rich Low_complexity Low_complexity 1 75 0 227 139 0 0 chr13 97733949 97733985 -4139184 + L1ME LINE L1 5624 5659 -462 1508 28 0 6 chr13 97734022 97734200 -4138969 + L1PA6 LINE L1 5747 5923 -231 13684 39 4 0 chr13 97734301 97736537 -4136632 - L1PA5 LINE L1 -153 6001 3761 2345 59 0 0 chr13 97736523 97736809 -4136360 + L1PA5 LINE L1 3467 3752 -2394 * 2266 209 93 4 chr13 97736804 97737353 -4135816 - L1 LINE L1 -1717 4429 3832 * 4262 183 30 63 chr13 97737353 97738278 -4134891 + L1MA9 LINE L1 4883 5784 -528 306 50 0 0 chr13 97738278 97738318 -4134851 + (TG)n Simple_repeat Simple_repeat 2 41 0 4262 183 30 63 chr13 97738318 97738792 -4134377 + L1MA9 LINE L1 5784 6272 -40 277 244 95 2 chr13 97739459 97739570 -4133599 + MER90 LTR ERV1 10 169 -445 446 126 12 48 chr13 97740271 97740438 -4132731 + (TA)n Simple_repeat Simple_repeat 1 161 0 810 255 89 41 chr13 97740720 97740991 -4132178 - MLT1A2 LTR MaLR -46 328 45 226 289 32 0 chr13 97742764 97742853 -4130316 - MIR SINE MIR -55 153 86 488 247 49 31 chr13 97743037 97743199 -4129970 - MLT1L LTR MaLR -2 613 449 324 211 0 0 chr13 97744238 97744314 -4128855 + G-rich Low_complexity Low_complexity 5 80 0 1432 214 81 24 chr13 97744945 97745314 -4127855 + MLT1B LTR MaLR 1 390 0 1505 199 19 16 chr13 97746477 97746798 -4126371 + L1MD2 LINE L1 6037 6358 -1 280 248 48 9 chr13 97747106 97747211 -4125958 - L1ME4a LINE L1 -72 6049 5941 664 308 8 4 chr13 97747424 97747658 -4125511 - L1ME4a LINE L1 -332 5789 5555 1250 181 53 0 chr13 97748056 97748283 -4124886 - Tigger5 DNA MER2_type 0 2323 2085 206 322 11 11 chr13 97749479 97749566 -4123603 + L2 LINE L2 3227 3313 0 396 151 93 0 chr13 97749964 97750050 -4123119 - L1MA8 LINE L1 -3 6288 6195 862 344 93 63 chr13 97750705 97751682 -4121487 - L1MEc LINE L1 -4602 1794 789 187 339 18 9 chr13 97751759 97751868 -4121301 - MIR SINE MIR -107 155 46 261 0 0 0 chr13 97752323 97752352 -4120817 + (A)n Simple_repeat Simple_repeat 1 29 0 430 267 79 12 chr13 97752906 97753071 -4120098 - MIR SINE MIR -35 227 52 632 40 0 0 chr13 97753739 97753815 -4119354 + L1PA5 LINE L1 6075 6150 -4 2592 97 3 24 chr13 97754951 97755334 -4117835 + THE1C LTR MaLR 1 375 0 18958 93 39 4 chr13 97757079 97759693 -4113476 + Charlie3 DNA MER1_type 1 2706 -4 296 204 27 102 chr13 97759873 97760020 -4113149 + L1ME2 LINE L1 5966 6101 -63 868 317 90 8 chr13 97762543 97762931 -4110238 - LTR16C LTR ERVL 0 491 72 471 165 0 24 chr13 97763033 97763118 -4110051 + AluJ/FLAM SINE Alu 2 84 -228 2198 124 0 16 chr13 97764722 97765061 -4108108 + AluSx SINE Alu 1 334 0 1607 228 26 34 chr13 97765403 97765820 -4107349 + MLT2D LTR ERVL 1 414 0 326 348 14 19 chr13 97766303 97766510 -4106659 - MIR SINE MIR -1 261 56 268 315 112 21 chr13 97766733 97766876 -4106293 + MIR SINE MIR 35 190 -72 424 244 79 0 chr13 97767065 97767192 -4105977 + MER96 DNA MER1_type? 3 139 -36 2255 113 0 19 chr13 97768544 97768863 -4104306 - AluSp SINE Alu 0 313 1 221 345 91 0 chr13 97769302 97769412 -4103757 - MIR SINE MIR -90 172 53 1759 109 23 0 chr13 97773228 97773484 -4099685 - L1PA13 LINE L1 -6 6157 5896 210 233 0 0 chr13 97775096 97775139 -4098030 + (CATA)n Simple_repeat Simple_repeat 4 46 0 220 229 76 76 chr13 97775359 97775528 -4097641 - MIR SINE MIR -12 250 83 554 257 89 68 chr13 97776502 97776840 -4096329 - L1ME4a LINE L1 0 6121 5777 433 311 36 41 chr13 97777286 97777434 -4095735 + MLT1J LTR MaLR 288 436 -75 1319 134 10 0 chr13 97777434 97777643 -4095526 + L1MA2 LINE L1 6092 6302 -2 433 311 36 41 chr13 97777643 97777690 -4095479 + MLT1J LTR MaLR 436 482 -29 1107 151 0 17 chr13 97777712 97777884 -4095285 - AluJb SINE Alu -9 303 135 415 290 14 7 chr13 97777907 97778052 -4095117 - L1ME4a LINE L1 -462 5659 5514 235 343 0 9 chr13 97779713 97779818 -4093351 - MIR3 SINE MIR -51 157 54 2069 122 37 0 chr13 97780246 97780542 -4092627 + AluSq SINE Alu 2 308 -5 4796 139 8 10 chr13 97780577 97781368 -4091801 - L1MA3 LINE L1 0 6305 5517 218 298 64 11 chr13 97782352 97782446 -4090723 - L2 LINE L2 -204 3068 2970 1876 212 20 0 chr13 97782777 97783131 -4090038 + MER47A DNA MER2_type 1 361 -5 739 119 37 12 chr13 97783608 97783935 -4089234 + (CA)n Simple_repeat Simple_repeat 1 335 0 2140 101 51 0 chr13 97786491 97786787 -4086382 + AluY SINE Alu 1 311 0 4155 62 5 0 chr13 97788024 97788732 -4084437 + L1PA7 LINE L1 5055 5766 -388 23519 44 0 1 chr13 97788732 97791305 -4081864 + L1PA5 LINE L1 2482 5034 -1120 2367 94 0 0 chr13 97791305 97791604 -4081565 + AluY SINE Alu 1 299 -12 23519 44 0 1 chr13 97791604 97792720 -4080449 + L1PA5 LINE L1 5034 6150 -4 2941 53 19 8 chr13 97792720 97793090 -4080079 + L1PA7 LINE L1 5769 6150 -4 523 198 112 66 chr13 97793107 97793304 -4079865 - MLT1C LTR MaLR -256 211 6 260 188 59 59 chr13 97793312 97793397 -4079772 - L1M4 LINE L1 -1178 4968 4884 * 563 247 26 26 chr13 97793396 97793590 -4079579 - L1ME LINE L1 -3526 2880 2687 509 254 70 33 chr13 97793584 97793927 -4079242 - L1ME LINE L1 -5071 1325 973 * 22 0 0 0 chr13 97794816 97794838 -4078331 + AT_rich Low_complexity Low_complexity 1 22 0 1591 226 20 0 chr13 97795614 97795955 -4077214 - MLT2C1 LTR ERVL 0 397 50 1773 159 0 24 chr13 97796070 97796365 -4076804 + AluJo SINE Alu 1 288 -24 302 113 0 19 chr13 97796365 97796418 -4076751 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 2344 213 61 21 chr13 97796624 97797276 -4075893 + LTR58 LTR ERV1 1 678 -1 274 313 128 44 chr13 97798042 97798634 -4074535 + L1ME4a LINE L1 5254 5896 -225 24 67 0 0 chr13 97798803 97798848 -4074321 + AT_rich Low_complexity Low_complexity 1 45 0 1962 122 0 22 chr13 97799041 97799319 -4073850 + AluSx SINE Alu 14 285 -27 2393 79 0 10 chr13 97800071 97800375 -4072794 - AluSg SINE Alu -9 301 1 694 281 33 5 chr13 97801553 97801763 -4071406 - MIR SINE MIR -27 235 20 526 230 55 0 chr13 97802147 97802312 -4070857 - MER5A DNA MER1_type -5 184 11 227 265 102 41 chr13 97802404 97802502 -4070667 + L2 LINE L2 2973 3076 -196 314 336 0 38 chr13 97802899 97803030 -4070139 + MER94 DNA DNA 6 131 -3 504 0 0 0 chr13 97804357 97804413 -4068756 + (TAGA)n Simple_repeat Simple_repeat 4 59 0 279 0 0 0 chr13 97804415 97804446 -4068723 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2029 125 4 0 chr13 97804449 97804730 -4068439 - AluSx SINE Alu -30 282 1 840 165 0 0 chr13 97804804 97804937 -4068232 - FLAM_C SINE Alu 0 133 1 798 268 131 18 chr13 97805049 97805493 -4067676 - MLT1D LTR MaLR -6 499 6 481 66 0 143 chr13 97805540 97805604 -4067565 + MADE1 DNA Mariner 3 52 -28 2295 108 0 3 chr13 97805604 97805918 -4067251 + AluSq SINE Alu 1 313 0 481 66 0 143 chr13 97805918 97805944 -4067225 + MADE1 DNA Mariner 52 80 0 307 167 28 28 chr13 97807760 97807832 -4065337 - HAL1 LINE L1 -858 1649 1578 1127 192 126 8 chr13 97807874 97808129 -4065040 - MLT1A1 LTR MaLR -75 290 6 506 275 25 62 chr13 97808172 97808492 -4064677 + L2 LINE L2 2919 3226 -87 368 93 0 0 chr13 97808654 97808708 -4064461 - Alu SINE Alu 0 301 248 2299 95 3 0 chr13 97808944 97809238 -4063931 - AluSg SINE Alu -15 295 1 256 284 98 47 chr13 97809406 97809681 -4063488 - HAL1 LINE L1 -1407 1100 812 249 224 30 0 chr13 97810165 97810232 -4062937 + C-rich Low_complexity Low_complexity 1 69 0 753 193 21 0 chr13 97811841 97811986 -4061183 - L1PA16 LINE L1 -141 6025 5878 618 159 8 32 chr13 97811986 97812110 -4061059 + L1PB4 LINE L1 6032 6154 -2 254 250 0 0 chr13 97812434 97812486 -4060683 + MLT2E LTR ERVL 48 99 -529 207 0 0 0 chr13 97814340 97814363 -4058806 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr13 97815013 97815036 -4058133 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 210 71 0 0 chr13 97815054 97815082 -4058087 + (TTA)n Simple_repeat Simple_repeat 3 30 0 16685 89 10 1 chr13 97815083 97818144 -4055025 - L1PA7 LINE L1 -16 6138 3056 11480 125 7 13 chr13 97818144 97819948 -4053221 + L1P LINE L1 1047 2838 -3308 232 255 32 90 chr13 97821834 97822022 -4051147 + L1MEd LINE L1 684 860 -5259 328 279 94 25 chr13 97822048 97822249 -4050920 + L1M4 LINE L1 3350 3564 -2582 621 304 64 25 chr13 97822274 97822768 -4050401 + L1MEd LINE L1 968 1574 -916 231 305 126 40 chr13 97822867 97823796 -4049373 + L1MEd LINE L1 2646 3654 -2475 11962 160 35 18 chr13 97823827 97824113 -4049056 + L1MA4 LINE L1 2935 3215 -3085 2430 87 0 3 chr13 97824113 97824424 -4048745 + AluY SINE Alu 1 310 -1 11962 160 35 18 chr13 97824424 97826937 -4046232 + L1MA4 LINE L1 3215 5777 -523 2722 141 49 7 chr13 97827030 97827518 -4045651 + L1MA4 LINE L1 5770 6274 -26 290 261 25 94 chr13 97827574 97827686 -4045483 + L1MEd LINE L1 3712 3805 -2324 2318 39 4 0 chr13 97827686 97827965 -4045204 - L1PA4 LINE L1 -3 6152 5873 290 261 25 94 chr13 97827965 97828055 -4045114 + L1MEd LINE L1 3805 3900 -2229 541 314 57 35 chr13 97828077 97828669 -4044500 + L1MEd LINE L1 4075 4679 -1450 1025 161 0 126 chr13 97828670 97828779 -4044390 - L1PB4 LINE L1 -6 6150 6029 1659 126 17 0 chr13 97828779 97829017 -4044152 + AluSx SINE Alu 44 285 -27 1025 161 0 126 chr13 97829017 97829030 -4044139 - L1PB4 LINE L1 -127 6029 6016 477 0 0 0 chr13 97829030 97829083 -4044086 + (TA)n Simple_repeat Simple_repeat 2 54 0 1025 161 0 126 chr13 97829083 97829189 -4043980 - L1PB4 LINE L1 -140 6016 5950 188 108 0 27 chr13 97829491 97829528 -4043641 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 392 266 17 118 chr13 97829574 97829811 -4043358 + MIR SINE MIR 16 228 -34 261 208 0 0 chr13 97830077 97830130 -4043039 - MIR3 SINE MIR -1 207 155 350 250 133 0 chr13 97830192 97830320 -4042849 - MIR SINE MIR 0 262 118 2280 242 91 45 chr13 97831236 97832050 -4041119 - L1ME1 LINE L1 0 6166 5316 2055 133 7 0 chr13 97832063 97832365 -4040804 + AluSx SINE Alu 1 304 -8 469 125 14 0 chr13 97832386 97832458 -4040711 - L1MC1 LINE L1 -13 6320 6248 1074 230 34 17 chr13 97832470 97832805 -4040364 - L1ME1 LINE L1 -1107 5039 4674 475 210 0 0 chr13 97833538 97833619 -4039550 + MER58B DNA MER1_type 245 325 -16 244 250 67 67 chr13 97833821 97833941 -4039228 + MIR3 SINE MIR 61 180 -28 2229 159 16 3 chr13 97834157 97834527 -4038642 + MLT1B LTR MaLR 16 390 0 868 165 85 12 chr13 97835211 97835375 -4037794 - AluJb SINE Alu 0 312 137 2119 100 0 0 chr13 97835452 97835721 -4037448 + AluSx SINE Alu 1 269 -43 245 50 0 25 chr13 97835733 97835773 -4037396 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 271 268 27 27 chr13 97836655 97836767 -4036402 + MER5A DNA MER1_type 7 118 -71 196 307 13 0 chr13 97836925 97837000 -4036169 - MER5C DNA MER1_type 0 324 249 404 248 16 32 chr13 97837100 97837225 -4035944 - MER5C DNA MER1_type -200 124 2 201 269 86 65 chr13 97837688 97837781 -4035388 + MIR SINE MIR 30 124 -84 2077 145 9 9 chr13 97837791 97838108 -4035061 - 7SLRNA srpRNA srpRNA -3 317 1 1561 244 77 23 chr13 97838139 97838569 -4034600 + MLT2B1 LTR ERVL 1 453 -67 219 189 0 28 chr13 97838585 97838691 -4034478 + (TA)n Simple_repeat Simple_repeat 1 103 0 270 185 19 0 chr13 97838717 97838771 -4034398 + MLT2B1 LTR ERVL 466 520 0 970 192 39 19 chr13 97838783 97839043 -4034126 + L1ME1 LINE L1 5042 5306 -840 212 192 39 0 chr13 97839044 97839096 -4034073 + GA-rich Low_complexity Low_complexity 2 55 0 3321 251 29 0 chr13 97839105 97839925 -4033244 + L1ME1 LINE L1 5318 6161 -5 181 355 32 37 chr13 97840562 97840779 -4032390 + L2 LINE L2 724 939 -2375 1379 232 17 31 chr13 97840997 97841355 -4031814 - MLT1A1 LTR MaLR -12 353 1 184 301 72 24 chr13 97841870 97841953 -4031216 + L2 LINE L2 3182 3268 -4 2057 194 149 14 chr13 97842016 97842512 -4030657 + MLT1F1 LTR MaLR 5 567 0 180 0 0 0 chr13 97844027 97844047 -4029122 + (TG)n Simple_repeat Simple_repeat 1 20 0 341 274 78 93 chr13 97844075 97844396 -4028773 - L1MC4a LINE L1 -1897 5911 5596 615 206 21 48 chr13 97844453 97844642 -4028527 - MER5A DNA MER1_type 0 189 6 209 353 43 7 chr13 97845700 97845839 -4027330 - MIR SINE MIR -72 190 47 358 266 21 42 chr13 97846057 97846200 -4026969 - MIR SINE MIR -94 168 29 1154 257 73 11 chr13 97847284 97847720 -4025449 + MLT1C LTR MaLR 1 463 -4 200 326 7 7 chr13 97848381 97848516 -4024653 + (TG)n Simple_repeat Simple_repeat 1 135 0 227 276 6 0 chr13 97848529 97848699 -4024470 + (TG)n Simple_repeat Simple_repeat 1 171 0 246 234 0 0 chr13 97848758 97848865 -4024304 + (TG)n Simple_repeat Simple_repeat 2 108 0 2117 107 0 14 chr13 97850551 97850855 -4022314 + AluSq SINE Alu 6 305 0 221 210 0 8 chr13 97850888 97851012 -4022157 + (GCTG)n Simple_repeat Simple_repeat 3 125 0 6996 19 0 1 chr13 97851110 97851907 -4021262 - L1P LINE L1 -1436 4710 3915 5264 27 0 0 chr13 97851907 97852503 -4020666 + L1PA3 LINE L1 5558 6155 0 697 236 19 0 chr13 97852507 97852664 -4020505 + MLT1F LTR MaLR 333 492 -50 602 214 8 8 chr13 97852754 97852880 -4020289 - MLT1F1 LTR MaLR 0 567 442 1105 202 140 71 chr13 97852901 97853351 -4019818 - MER74A LTR ERVL -34 524 44 1047 276 40 8 chr13 97853383 97853765 -4019404 - MLT1F1 LTR MaLR -115 427 31 217 323 111 0 chr13 97853856 97853955 -4019214 + MER5B DNA MER1_type 4 113 -65 197 295 0 33 chr13 97855075 97855136 -4018033 + L3 LINE CR1 1002 1060 -517 409 204 178 26 chr13 97856145 97856336 -4016833 + MLT1D LTR MaLR 285 504 -1 207 0 0 0 chr13 97856358 97856381 -4016788 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr13 97856513 97856534 -4016635 + (TG)n Simple_repeat Simple_repeat 1 21 0 1959 155 0 0 chr13 97857612 97857902 -4015267 - AluSx SINE Alu -22 290 1 293 216 49 49 chr13 97858489 97858591 -4014578 + MER63 DNA MER1_type 44 771 -291 27 0 0 0 chr13 97858758 97858785 -4014384 + AT_rich Low_complexity Low_complexity 1 27 0 1048 258 173 50 chr13 97858870 97859137 -4014032 + L1MC4a LINE L1 5296 5529 -2279 2057 126 0 0 chr13 97859137 97859414 -4013755 + AluSx SINE Alu 1 277 -35 207 0 0 0 chr13 97859420 97859443 -4013726 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1048 258 173 50 chr13 97859443 97859944 -4013225 + L1MC4a LINE L1 5533 6166 -1642 204 300 33 0 chr13 97860214 97860304 -4012865 - MIR SINE MIR -109 153 61 205 270 0 87 chr13 97860776 97860902 -4012267 + C-rich Low_complexity Low_complexity 1 115 0 1622 221 117 15 chr13 97861544 97862064 -4011105 + L1ME2 LINE L1 5562 6134 -30 279 279 76 0 chr13 97862214 97862293 -4010876 + MIR SINE MIR 79 163 -99 1638 229 67 18 chr13 97862321 97862766 -4010403 - MLT1C LTR MaLR 0 467 1 253 123 18 35 chr13 97866312 97866369 -4006800 + T-rich Low_complexity Low_complexity 5 60 0 236 330 11 11 chr13 97867576 97867667 -4005502 + MIR SINE MIR 160 250 -12 21 36 0 0 chr13 97868377 97868405 -4004764 + AT_rich Low_complexity Low_complexity 1 28 0 1652 232 30 26 chr13 97868974 97869439 -4003730 + MLT1C LTR MaLR 1 467 0 230 242 192 20 chr13 97870579 97870678 -4002491 - LTR33 LTR ERVL 0 521 406 489 92 0 0 chr13 97870769 97870879 -4002290 - AluSp SINE Alu 0 328 219 1655 79 5 0 chr13 97871225 97871440 -4001729 - AluSp SINE Alu -95 218 3 551 213 185 75 chr13 97873467 97873922 -3999247 + MLT1H LTR MaLR 45 549 0 22 80 0 0 chr13 97874172 97874222 -3998947 + AT_rich Low_complexity Low_complexity 1 50 0 409 105 0 0 chr13 97874252 97874309 -3998860 - U2 snRNA snRNA -131 57 1 272 277 314 0 chr13 97875122 97875281 -3997888 - MIR SINE MIR -34 228 20 1338 218 90 18 chr13 97875539 97875939 -3997230 + Charlie4a DNA MER1_type 43 471 -37 1526 150 99 26 chr13 97876266 97876539 -3996630 - MER4A LTR ERV1 0 664 372 659 105 0 11 chr13 97876540 97876635 -3996534 - MER4A LTR ERV1 -570 94 1 35 41 0 0 chr13 97878446 97878495 -3994674 + GC_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 97880050 97880071 -3993098 + AT_rich Low_complexity Low_complexity 1 21 0 183 343 41 0 chr13 97880105 97880178 -3992991 + L2 LINE L2 3197 3272 0 703 119 16 0 chr13 97880181 97880307 -3992862 + (TGGA)n Simple_repeat Simple_repeat 1 128 0 363 238 12 12 chr13 97880453 97880533 -3992636 - MIR SINE MIR -149 113 34 864 200 118 109 chr13 97881477 97882001 -3991168 + L1ME1 LINE L1 1605 2133 -4407 5437 259 42 27 chr13 97882017 97884148 -3989021 + L1ME1 LINE L1 2432 4563 -1977 2965 205 66 35 chr13 97884191 97884454 -3988715 + L1MB5 LINE L1 5040 5294 -880 1668 193 0 3 chr13 97884454 97884765 -3988404 + AluJb SINE Alu 1 310 -2 2965 205 66 35 chr13 97884765 97885099 -3988070 + L1MB5 LINE L1 5294 5616 -558 1965 79 0 15 chr13 97885099 97885366 -3987803 + AluY SINE Alu 49 311 0 2965 205 66 35 chr13 97885366 97885774 -3987395 + L1MB5 LINE L1 5616 6078 -96 668 127 45 0 chr13 97886237 97886347 -3986822 + L1MB5 LINE L1 6059 6173 -1 562 257 0 22 chr13 97886348 97886527 -3986642 + L1ME1 LINE L1 5392 5566 -974 607 205 96 2 chr13 97886527 97886699 -3986470 + L1PA16 LINE L1 5947 6156 -5 2105 261 63 62 chr13 97886751 97886859 -3986310 + L1ME1 LINE L1 5620 5726 -834 1603 163 7 14 chr13 97886859 97887166 -3986003 + AluSx SINE Alu 1 305 0 2105 261 63 62 chr13 97887166 97887977 -3985192 + L1ME1 LINE L1 5726 6542 -18 30 27 0 0 chr13 97889658 97889695 -3983474 + AT_rich Low_complexity Low_complexity 1 37 0 244 344 159 19 chr13 97890703 97890860 -3982309 + L2 LINE L2 3088 3266 -6 210 114 45 0 chr13 97891061 97891105 -3982064 + (TTAAA)n Simple_repeat Simple_repeat 3 48 0 255 303 166 7 chr13 97893129 97893274 -3979895 - MIR3 SINE MIR -8 200 33 2265 82 0 3 chr13 97895585 97895879 -3977290 + AluSp SINE Alu 1 293 -20 643 141 47 23 chr13 97895895 97896023 -3977146 + FAM SINE Alu 20 150 -35 231 242 105 32 chr13 97896112 97896207 -3976962 + L1ME4a LINE L1 5998 6099 -22 260 70 23 0 chr13 97896819 97896862 -3976307 + (TG)n Simple_repeat Simple_repeat 1 44 0 229 293 243 7 chr13 97897065 97897205 -3975964 - MIR3 SINE MIR -23 185 13 2271 102 0 0 chr13 97898696 97898999 -3974170 - AluSq SINE Alu -10 303 1 551 146 9 239 chr13 97899174 97899362 -3973807 + MER106B DNA MER1_type 1 231 -828 4069 182 10 1 chr13 97899362 97900093 -3973076 + L1MB3 LINE L1 5445 6181 -2 551 146 9 239 chr13 97900093 97900117 -3973052 + MER106B DNA MER1_type 231 259 -800 2720 7 0 3 chr13 97900117 97900423 -3972746 + AluYb8 SINE Alu 1 305 -13 551 146 9 239 chr13 97900423 97900515 -3972654 + MER106B DNA MER1_type 259 1059 0 1816 167 0 0 chr13 97900671 97900965 -3972204 - AluJb SINE Alu -18 294 1 182 309 18 0 chr13 97902633 97902688 -3970481 + L2 LINE L2 3217 3272 0 2002 119 0 19 chr13 97903941 97904251 -3968918 - AluJb SINE Alu -8 304 1 381 304 129 89 chr13 97905207 97906030 -3967139 - L3 LINE CR1 -88 1489 634 373 200 12 48 chr13 97906345 97906510 -3966659 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 225 236 14 56 chr13 97906631 97906703 -3966466 + L3 LINE CR1 578 646 -931 231 241 51 102 chr13 97906704 97906841 -3966328 + L2 LINE L2 3143 3272 0 195 218 0 0 chr13 97907871 97907926 -3965243 + (TA)n Simple_repeat Simple_repeat 1 55 0 2031 129 16 0 chr13 97907968 97908271 -3964898 - AluSx SINE Alu -4 308 1 187 125 0 54 chr13 97908786 97908842 -3964327 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 338 147 15 0 chr13 97909454 97909522 -3963647 + (CA)n Simple_repeat Simple_repeat 2 70 0 216 97 0 0 chr13 97909872 97909903 -3963266 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 686 155 16 0 chr13 97909979 97910108 -3963061 + GA-rich Low_complexity Low_complexity 1 131 0 904 295 31 31 chr13 97911029 97911452 -3961717 + L1ME1 LINE L1 5745 6312 0 201 74 0 0 chr13 97913514 97913541 -3959628 + (TTTTG)n Simple_repeat Simple_repeat 5 31 0 204 316 140 9 chr13 97914191 97914305 -3958864 + MIR3 SINE MIR 38 166 -42 268 238 28 112 chr13 97919471 97919614 -3953555 - MIR SINE MIR -8 254 124 731 241 18 36 chr13 97920672 97920892 -3952277 + MER20 DNA MER1_type 1 216 -3 358 168 5 201 chr13 97920921 97921130 -3952039 + MER112 DNA MER1_type 1 168 -92 207 0 0 0 chr13 97924637 97924660 -3948509 + (TG)n Simple_repeat Simple_repeat 2 24 0 1583 115 169 0 chr13 97924660 97924926 -3948243 - AluSx SINE Alu 0 307 1 2078 99 0 0 chr13 97925091 97925400 -3947769 - AluSg SINE Alu 0 309 1 239 299 15 0 chr13 97925782 97925849 -3947320 + L2 LINE L2 3168 3235 -37 202 215 46 46 chr13 97926137 97926202 -3946967 - MIR SINE MIR -111 151 87 287 385 8 8 chr13 97928472 97928589 -3944580 - MIR SINE MIR -127 135 19 374 288 0 72 chr13 97928940 97928987 -3944182 - MER3 DNA MER1_type -13 149 100 2207 82 3 0 chr13 97928987 97929318 -3943851 - AluSp SINE Alu 0 313 2 374 288 0 72 chr13 97929318 97929423 -3943746 - MER3 DNA MER1_type -62 100 8 262 274 183 72 chr13 97929663 97929871 -3943298 + L2 LINE L2 2992 3222 -50 22 0 0 0 chr13 97930052 97930074 -3943095 + AT_rich Low_complexity Low_complexity 1 22 0 200 299 0 26 chr13 97930799 97930876 -3942293 + CT-rich Low_complexity Low_complexity 2 76 0 207 273 129 65 chr13 97933929 97934068 -3939101 + L3 LINE CR1 1304 1451 -126 503 170 75 11 chr13 97935382 97935476 -3937693 - MIR SINE MIR -55 153 54 205 51 51 0 chr13 97936534 97936573 -3936596 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 204 318 117 29 chr13 97937074 97937348 -3935821 + L2 LINE L2 2962 3259 -54 360 0 0 0 chr13 97938035 97938075 -3935094 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 232 14 14 chr13 97940003 97940072 -3933097 + A-rich Low_complexity Low_complexity 4 72 0 1045 112 6 6 chr13 97941193 97941371 -3931798 + (GGA)n Simple_repeat Simple_repeat 2 179 0 2131 105 3 0 chr13 97941659 97941953 -3931216 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr13 97942193 97942214 -3930955 + AT_rich Low_complexity Low_complexity 1 21 0 496 116 74 0 chr13 97942398 97942493 -3930676 + L1MA8 LINE L1 6186 6287 -4 2043 126 0 0 chr13 97942887 97943180 -3929989 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr13 97943253 97943283 -3929886 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr13 97944591 97944621 -3928548 + AT_rich Low_complexity Low_complexity 1 30 0 260 328 34 8 chr13 97944662 97944781 -3928388 + L1ME LINE L1 5561 5682 -439 2187 83 0 0 chr13 97945543 97945821 -3927348 + AluSx SINE Alu 7 284 -28 204 40 0 0 chr13 97945821 97945846 -3927323 + (TA)n Simple_repeat Simple_repeat 1 25 0 183 328 15 15 chr13 97946500 97946567 -3926602 + MIR3 SINE MIR 141 207 -1 204 250 45 0 chr13 97949143 97949231 -3923938 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 1905 194 22 39 chr13 97950576 97950989 -3922180 + MLT2D LTR ERVL 2 407 -7 25 31 0 0 chr13 97951700 97951732 -3921437 + AT_rich Low_complexity Low_complexity 1 32 0 2825 118 11 9 chr13 97952793 97953232 -3919937 + L1PB2 LINE L1 5712 6151 0 1990 105 14 0 chr13 97954060 97954346 -3918823 - AluSx SINE Alu -22 290 1 2297 208 18 7 chr13 97954347 97954794 -3918375 + MLT2B2 LTR ERVL 2 453 -62 2039 123 0 16 chr13 97955230 97955539 -3917630 + AluSx SINE Alu 1 304 -8 230 321 23 46 chr13 97956553 97956684 -3916485 - MIR SINE MIR -63 145 18 282 334 45 7 chr13 97956733 97956894 -3916275 - MIR SINE MIR -65 143 17 371 155 17 0 chr13 97959547 97959605 -3913564 - Tigger5 DNA MER2_type 0 2323 2265 1023 156 0 0 chr13 97959605 97959784 -3913385 + (TA)n Simple_repeat Simple_repeat 2 180 0 343 321 0 0 chr13 97959784 97959868 -3913301 - L1MC4 LINE L1 -1345 6697 6614 * 395 292 0 0 chr13 97959793 97959882 -3913287 + L1MC4 LINE L1 6615 6703 -1339 235 185 0 0 chr13 97959887 97959941 -3913228 - L1MC4 LINE L1 -1340 6702 6649 1333 154 123 8 chr13 97959941 97960194 -3912975 - AluSg1 SINE Alu -27 282 1 1219 154 11 34 chr13 97960199 97960484 -3912685 - Tigger5 DNA MER2_type -54 2269 94 2569 52 0 0 chr13 97962448 97962758 -3910411 + AluY SINE Alu 1 310 -1 23 33 0 0 chr13 97962788 97962818 -3910351 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr13 97962890 97962940 -3910229 + AT_rich Low_complexity Low_complexity 1 50 0 2126 132 0 0 chr13 97964292 97964579 -3908590 - AluSx SINE Alu -25 287 1 222 204 61 0 chr13 97965200 97965249 -3907920 + L2 LINE L2 3247 3298 -15 2308 89 7 0 chr13 97965258 97965571 -3907598 + AluSx SINE Alu 1 312 0 429 36 0 0 chr13 97967344 97967399 -3905770 + (CA)n Simple_repeat Simple_repeat 2 56 0 207 189 0 0 chr13 97967404 97967457 -3905712 + GA-rich Low_complexity Low_complexity 2 54 0 1137 194 177 7 chr13 97969482 97969792 -3903377 + MLT1A1 LTR MaLR 1 363 -2 453 169 56 0 chr13 97970114 97970274 -3902895 + (TG)n Simple_repeat Simple_repeat 1 169 0 2188 126 3 0 chr13 97974257 97974558 -3898611 + AluSx SINE Alu 1 302 -10 231 310 45 45 chr13 97974569 97974724 -3898445 - MER103 DNA DNA -10 156 2 2382 62 0 29 chr13 97975326 97975632 -3897537 + AluY SINE Alu 2 298 -13 21 0 0 0 chr13 97975875 97975896 -3897273 + AT_rich Low_complexity Low_complexity 1 21 0 814 210 32 5 chr13 97977348 97977534 -3895635 + MER20 DNA MER1_type 29 219 0 23 0 0 0 chr13 97980161 97980184 -3892985 + AT_rich Low_complexity Low_complexity 1 23 0 1980 159 0 0 chr13 97980818 97981126 -3892043 - AluSx SINE Alu -4 308 1 2161 125 0 3 chr13 97983279 97983575 -3889594 - AluSq SINE Alu -18 295 1 287 231 244 6 chr13 97983675 97983831 -3889338 - MIR SINE MIR -21 241 49 568 204 189 0 chr13 97984756 97984911 -3888258 - MER104 DNA Tc2 -3 177 5 405 0 0 0 chr13 97987747 97987792 -3885377 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 139 0 0 chr13 97987794 97987830 -3885339 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 1969 108 4 7 chr13 97988471 97988749 -3884420 - AluSx SINE Alu -35 277 1 859 216 37 16 chr13 97989045 97989290 -3883879 + L1ME3 LINE L1 5895 6144 -18 228 303 15 0 chr13 97989303 97989369 -3883800 + L1ME3A LINE L1 5678 5744 -426 485 239 115 25 chr13 97989454 97989703 -3883466 + L1ME3A LINE L1 5882 6161 -3 2172 114 0 0 chr13 97991990 97992280 -3880889 - AluSx SINE Alu -22 290 1 569 156 34 26 chr13 97992365 97992670 -3880499 + (TA)n Simple_repeat Simple_repeat 1 307 0 420 205 49 40 chr13 97992670 97993130 -3880039 + (CATATA)n Simple_repeat Simple_repeat 1 464 0 499 206 29 0 chr13 97993149 97993324 -3879845 + (TA)n Simple_repeat Simple_repeat 1 180 0 500 154 0 53 chr13 97993353 97993541 -3879628 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 459 242 22 0 chr13 97993542 97993819 -3879350 + (TA)n Simple_repeat Simple_repeat 1 282 0 600 177 0 26 chr13 97993895 97994008 -3879161 + Tigger4(Zombi) DNA MER2_type 1 110 -2621 203 335 82 41 chr13 97994835 97995029 -3878140 - L2 LINE L2 -19 3253 3052 370 248 34 0 chr13 97995466 97995583 -3877586 + GA-rich Low_complexity Low_complexity 2 122 0 2765 130 12 51 chr13 97995685 97996177 -3876992 + L1PA15 LINE L1 5693 6165 0 258 243 118 49 chr13 97997150 97997294 -3875875 - L2 LINE L2 -424 2890 2737 1988 156 0 10 chr13 97997319 97997633 -3875536 + AluJb SINE Alu 1 311 -1 1973 99 0 46 chr13 97997771 97998054 -3875115 + AluSx SINE Alu 28 297 -15 242 298 16 73 chr13 97998368 97998492 -3874677 - MIR SINE MIR -80 182 66 311 298 19 29 chr13 97998565 97998669 -3874500 - MER69 DNA AcHobo -2423 103 1 2987 177 52 0 chr13 97999505 98000149 -3873020 - L1PBa LINE L1 -4935 2631 1810 1993 186 22 3 chr13 98000162 98000517 -3872652 - L1PBa LINE L1 -5821 1745 1384 250 305 80 7 chr13 98000873 98001024 -3872145 + Charlie7 DNA MER1_type 2435 2596 -16 774 158 0 8 chr13 98001059 98001192 -3871977 + FLAM_C SINE Alu 2 133 0 3336 201 33 11 chr13 98001907 98003118 -3870051 + L1M2 LINE L1 2253 3493 -3355 682 201 74 7 chr13 98003749 98003898 -3869271 - FRAM SINE Alu -18 158 1 584 226 142 5 chr13 98004320 98004524 -3868645 + MIR SINE MIR 1 232 -30 2087 85 0 0 chr13 98004871 98005129 -3868040 - AluSx SINE Alu -52 260 3 693 238 6 12 chr13 98005134 98005294 -3867875 - MER33 DNA MER1_type -165 159 1 1566 124 17 0 chr13 98006134 98006392 -3866777 + L1PA8 LINE L1 5916 6177 0 8529 87 18 19 chr13 98007379 98008565 -3864604 - HERV15 LTR ERV1 -6973 1762 579 7326 96 8 18 chr13 98008667 98009756 -3863413 + L1P LINE L1 3077 4154 -1992 1296 38 0 0 chr13 98009756 98009914 -3863255 + (GGGAA)n Simple_repeat Simple_repeat 4 161 0 9150 110 4 5 chr13 98010039 98011379 -3861790 + L1P LINE L1 1554 2891 -3255 4045 167 28 9 chr13 98011479 98012163 -3861006 - L1PBa LINE L1 -6181 1384 688 582 268 80 56 chr13 98012263 98012449 -3860720 - HAL1 LINE L1 -1500 1007 808 1717 162 43 23 chr13 98012449 98012752 -3860417 + AluJo SINE Alu 1 309 -3 582 268 80 56 chr13 98012752 98012904 -3860265 - HAL1 LINE L1 -1699 808 661 346 243 39 0 chr13 98013008 98013111 -3860058 - MER5A DNA MER1_type -80 109 3 679 219 31 19 chr13 98013150 98013310 -3859859 + MER3 DNA MER1_type 48 209 0 2110 94 3 28 chr13 98013466 98013753 -3859416 - AluSx SINE Alu -30 282 3 9579 81 2 4 chr13 98013886 98015127 -3858042 - L1P3 LINE L1 -4781 1680 442 2310 25 0 21 chr13 98015976 98016257 -3856912 + L1PA4 LINE L1 5881 6155 0 12704 63 4 5 chr13 98016713 98018321 -3854848 - L1P LINE L1 -4172 1974 369 7546 30 2 0 chr13 98018437 98019665 -3853504 - L1PA4 LINE L1 -4 6151 4918 315 250 29 0 chr13 98022008 98022076 -3851093 - MER5B DNA MER1_type -15 163 94 2163 20 0 0 chr13 98023152 98023396 -3849773 + L1PA3 LINE L1 5908 6151 -4 1041 176 10 5 chr13 98023639 98023838 -3849331 - L1MB1 LINE L1 -1 6167 5968 12225 42 3 0 chr13 98023838 98025346 -3847823 - L1P LINE L1 -2433 3713 2202 564 15 0 0 chr13 98025346 98025413 -3847756 + L1P LINE L1 3726 3792 -2354 445 327 28 19 chr13 98025513 98025724 -3847445 + L1PA12 LINE L1 203 415 -7166 240 281 115 36 chr13 98026096 98026235 -3846934 + L1PA12 LINE L1 1866 2015 -5566 226 302 104 90 chr13 98026487 98026755 -3846414 + L1PBb LINE L1 796 1067 -5782 2135 225 242 6 chr13 98026962 98027762 -3845407 + L1PBb LINE L1 1040 2086 -4762 307 83 0 21 chr13 98027762 98027810 -3845359 + MER4C LTR ERV1 419 465 0 562 207 15 0 chr13 98027810 98027945 -3845224 + L1 LINE L1 3612 3748 -2398 454 187 41 6 chr13 98028498 98028669 -3844500 + GA-rich Low_complexity Low_complexity 3 179 0 26 50 0 0 chr13 98030636 98030676 -3842493 + AT_rich Low_complexity Low_complexity 1 40 0 2141 101 0 7 chr13 98030997 98031295 -3841874 + AluSx SINE Alu 6 301 -11 23 0 0 0 chr13 98032476 98032499 -3840670 + AT_rich Low_complexity Low_complexity 1 23 0 2294 140 22 0 chr13 98032822 98033178 -3839991 - THE1B LTR MaLR 0 364 1 867 127 6 77 chr13 98033376 98033505 -3839664 + L1MB3 LINE L1 6014 6128 -55 2271 52 42 0 chr13 98033505 98033792 -3839377 + AluY SINE Alu 1 299 -12 867 127 6 77 chr13 98033792 98033843 -3839326 + L1MB3 LINE L1 6128 6181 -2 22 35 0 0 chr13 98036178 98036207 -3836962 + AT_rich Low_complexity Low_complexity 1 29 0 878 179 0 0 chr13 98036215 98036371 -3836798 - AluJo SINE Alu -36 276 121 206 269 15 30 chr13 98037201 98037268 -3835901 + GA-rich Low_complexity Low_complexity 3 68 0 252 200 35 0 chr13 98037435 98037520 -3835649 + CT-rich Low_complexity Low_complexity 1 88 0 590 326 14 10 chr13 98039371 98039659 -3833510 + L1MC4 LINE L1 7735 8023 -19 219 146 0 0 chr13 98040593 98040634 -3832535 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 184 228 53 18 chr13 98043221 98043278 -3829891 - MIR SINE MIR -43 219 161 3448 257 63 24 chr13 98043525 98044644 -3828525 + L1MC4a LINE L1 6642 7803 -5 23 33 0 0 chr13 98046729 98046759 -3826410 + AT_rich Low_complexity Low_complexity 1 30 0 226 289 107 16 chr13 98046787 98046908 -3826261 - L2 LINE L2 -2 3311 3180 211 343 46 19 chr13 98047460 98047568 -3825601 - MIR3 SINE MIR -3 205 95 5739 176 22 16 chr13 98047747 98048982 -3824187 + L1MC1 LINE L1 5090 6333 0 490 252 75 0 chr13 98049562 98049669 -3823500 + Charlie8 DNA MER1_type 1 115 -2302 491 184 39 19 chr13 98050314 98050417 -3822752 + L1PB4 LINE L1 6052 6156 0 213 39 0 0 chr13 98051240 98051266 -3821903 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 235 301 72 0 chr13 98054986 98055069 -3818100 + MIR SINE MIR 123 211 -51 291 327 18 0 chr13 98055254 98055367 -3817802 + MER117 DNA MER1_type 6 120 -77 440 293 0 58 chr13 98056229 98056420 -3816749 + (CA)n Simple_repeat Simple_repeat 1 180 0 1528 206 199 21 chr13 98058222 98058658 -3814511 + MLT2B1 LTR ERVL 1 514 -6 2037 87 13 30 chr13 98060711 98061033 -3812136 + AluSq SINE Alu 3 319 0 2241 74 0 20 chr13 98061486 98061782 -3811387 + AluSg SINE Alu 1 290 -20 532 141 0 0 chr13 98063477 98063555 -3809614 - HY3 scRNA scRNA -23 78 1 1530 142 50 57 chr13 98065190 98065508 -3807661 - THE1C LTR MaLR -2 373 58 431 215 138 15 chr13 98067515 98067645 -3805524 + L2 LINE L2 3168 3313 0 207 100 0 0 chr13 98067981 98068011 -3805158 + (T)n Simple_repeat Simple_repeat 1 30 0 2383 99 7 0 chr13 98068157 98068460 -3804709 - AluSq SINE Alu -8 305 1 3554 199 35 23 chr13 98069285 98070082 -3803087 - MER21B LTR ERV1 -52 811 5 475 252 102 0 chr13 98070087 98070234 -3802935 - MIR SINE MIR -25 237 76 36 0 0 0 chr13 98070246 98070282 -3802887 + AT_rich Low_complexity Low_complexity 1 36 0 396 231 162 0 chr13 98071995 98072112 -3801057 + MER5A DNA MER1_type 54 189 0 186 225 0 0 chr13 98072202 98072242 -3800927 + MIR SINE MIR 213 252 -10 * 313 304 0 20 chr13 98072234 98072336 -3800833 - MIR SINE MIR -49 213 114 21 36 0 0 chr13 98072854 98072882 -3800287 + AT_rich Low_complexity Low_complexity 1 28 0 363 382 51 33 chr13 98076339 98076614 -3796555 + L2 LINE L2 2992 3271 -1 28 0 0 0 chr13 98079042 98079070 -3794099 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr13 98080160 98080191 -3792978 + GC_rich Low_complexity Low_complexity 1 31 0 1954 149 0 10 chr13 98082470 98082779 -3790390 + AluSx SINE Alu 3 308 -4 262 268 114 32 chr13 98082990 98083113 -3790056 + MER5A DNA MER1_type 1 133 -56 212 309 103 0 chr13 98083035 98083132 -3790037 - MER5A DNA MER1_type -35 154 48 * 574 234 115 29 chr13 98083543 98083752 -3789417 - MIR SINE MIR -13 249 23 270 258 67 67 chr13 98084250 98084370 -3788799 + MIR SINE MIR 111 230 -32 186 269 39 39 chr13 98085554 98085632 -3787537 + MIR SINE MIR 44 121 -87 1062 197 4 54 chr13 98086670 98086929 -3786240 + L1MD3 LINE L1 7732 7977 -18 2305 118 0 6 chr13 98088051 98088365 -3784804 - AluSx SINE Alu 0 312 1 265 283 125 17 chr13 98089371 98089491 -3783678 - MIR SINE MIR -123 139 7 556 217 6 6 chr13 98089674 98089854 -3783315 + (CA)n Simple_repeat Simple_repeat 1 180 0 521 218 6 0 chr13 98089885 98090050 -3783119 + (CA)n Simple_repeat Simple_repeat 1 166 0 186 300 73 27 chr13 98090756 98090866 -3782303 + MIR3 SINE MIR 91 205 -3 297 267 69 46 chr13 98091232 98091363 -3781806 + MIR SINE MIR 34 167 -95 21 0 0 0 chr13 98091959 98091980 -3781189 + AT_rich Low_complexity Low_complexity 1 21 0 246 105 0 0 chr13 98093820 98093841 -3779328 + (TG)n Simple_repeat Simple_repeat 1 59 0 246 105 0 0 chr13 98093841 98093879 -3779290 + (TG)n Simple_repeat Simple_repeat 2 39 0 221 206 0 16 chr13 98093999 98094062 -3779107 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 1958 157 22 19 chr13 98094100 98094414 -3778755 - L1MB3 LINE L1 -2 6181 5864 1830 152 44 41 chr13 98094414 98094777 -3778392 - THE1B LTR MaLR 0 364 1 1958 157 22 19 chr13 98094777 98094832 -3778337 - L1MB3 LINE L1 -319 5864 5811 215 319 121 9 chr13 98095511 98095627 -3777542 + L2 LINE L2 3141 3269 -3 307 244 58 0 chr13 98097387 98097473 -3775696 - MER5A DNA MER1_type -83 106 16 2234 106 0 7 chr13 98098575 98098876 -3774293 - AluSx SINE Alu -13 299 1 285 374 63 5 chr13 98098955 98099145 -3774024 + MIR SINE MIR 50 250 -12 273 311 65 9 chr13 98104480 98104757 -3768412 - L1M LINE L1 -745 5425 5127 361 260 62 17 chr13 98104770 98104947 -3768222 - L1M4 LINE L1 -1857 4289 4105 428 336 8 0 chr13 98106577 98106711 -3766458 - MIR SINE MIR -19 243 109 205 176 59 20 chr13 98106840 98106891 -3766278 + L2 LINE L2 3241 3293 -20 263 284 76 35 chr13 98107374 98107571 -3765598 + L1ME4a LINE L1 5712 5916 -205 2149 144 36 25 chr13 98108004 98108364 -3764805 + THE1B LTR MaLR 1 364 0 354 290 11 0 chr13 98109930 98110023 -3763146 - MER5B DNA MER1_type -84 94 1 260 53 26 0 chr13 98111074 98111112 -3762057 + (GA)n Simple_repeat Simple_repeat 1 39 0 280 243 29 14 chr13 98112443 98112513 -3760656 + L2 LINE L2 3202 3272 0 1534 133 26 4 chr13 98112876 98113110 -3760059 - AluSg1 SINE Alu -20 289 51 338 257 9 28 chr13 98115293 98115402 -3757767 - MIR SINE MIR -35 227 121 185 132 132 19 chr13 98118845 98118898 -3754271 + L3b LINE CR1 1279 1337 -246 1847 164 3 0 chr13 98122678 98122977 -3750192 - AluSx SINE Alu -12 300 1 1738 161 30 3 chr13 98123802 98123985 -3749184 - AluJb SINE Alu 0 312 116 294 29 0 0 chr13 98123985 98124020 -3749149 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1738 161 30 3 chr13 98124020 98124140 -3749029 - AluJb SINE Alu -196 116 1 226 154 62 77 chr13 98124602 98124667 -3748502 - L1M3de LINE L1 -6279 374 311 294 73 0 0 chr13 98124851 98124892 -3748277 + (ATG)n Simple_repeat Simple_repeat 1 41 0 451 278 52 41 chr13 98125132 98125326 -3747843 + L2 LINE L2 3118 3313 0 2159 82 10 0 chr13 98129536 98129829 -3743340 - AluSg SINE Alu -14 296 1 903 169 50 91 chr13 98129857 98130099 -3743070 + L1MC1 LINE L1 6097 6328 -5 5413 183 100 4 chr13 98130360 98131484 -3741685 - Tigger3b DNA MER2_type 0 1231 1 236 350 36 0 chr13 98134739 98134876 -3738293 - MIR3 SINE MIR -22 186 45 1209 178 22 30 chr13 98135275 98135505 -3737664 - AluJb SINE Alu -84 228 1 1111 59 0 0 chr13 98136750 98136885 -3736284 - AluSq/x SINE Alu -177 135 1 573 178 8 54 chr13 98137704 98137833 -3735336 - MER3 DNA MER1_type -6 203 81 382 278 11 0 chr13 98137844 98137934 -3735235 + L2 LINE L2 3223 3313 0 2096 108 3 0 chr13 98138019 98138325 -3734844 - AluSq SINE Alu -6 307 1 183 265 20 0 chr13 98138390 98138439 -3734730 + MIR SINE MIR 66 115 -93 209 370 37 0 chr13 98141039 98141120 -3732049 - L3b LINE CR1 -88 1495 1412 2070 84 0 14 chr13 98141811 98142120 -3731049 + AluSc SINE Alu 1 305 0 1358 162 8 4 chr13 98142146 98142380 -3730789 + MER46A DNA MER2_type 1 235 -1 314 317 84 75 chr13 98142791 98143113 -3730056 - L3 LINE CR1 -356 1221 904 1945 101 27 24 chr13 98143113 98143439 -3729730 - AluSg SINE Alu 0 310 1 212 0 36 0 chr13 98143446 98143474 -3729695 + (TTG)n Simple_repeat Simple_repeat 2 30 0 314 317 84 75 chr13 98143474 98143559 -3729610 - L3 LINE CR1 -678 899 802 21 0 0 0 chr13 98145474 98145495 -3727674 + AT_rich Low_complexity Low_complexity 1 21 0 332 348 106 5 chr13 98147140 98147347 -3725822 - MIR SINE MIR -1 261 34 1923 134 3 3 chr13 98148556 98148846 -3724323 + AluSx SINE Alu 6 295 -17 232 298 179 13 chr13 98149619 98149770 -3723399 - MER5A DNA MER1_type -1 188 13 228 288 100 0 chr13 98151350 98151430 -3721739 - MIR3 SINE MIR -5 203 116 722 238 68 5 chr13 98152100 98152306 -3720863 + MER20 DNA MER1_type 1 219 0 224 240 60 0 chr13 98152437 98152487 -3720682 - L2 LINE L2 -1 3271 3219 204 293 41 65 chr13 98152623 98152746 -3720423 + MIR SINE MIR 24 143 -119 30 0 0 0 chr13 98153444 98153474 -3719695 + AT_rich Low_complexity Low_complexity 1 30 0 1996 124 20 0 chr13 98156610 98156916 -3716253 - AluSx SINE Alu 0 312 1 2224 82 7 0 chr13 98157987 98158279 -3714890 + AluY SINE Alu 1 294 -17 218 299 154 17 chr13 98159444 98159561 -3713608 + MIR SINE MIR 54 186 -76 2147 108 0 3 chr13 98159962 98160268 -3712901 + AluSg SINE Alu 1 305 -5 24 32 0 0 chr13 98162870 98162901 -3710268 + AT_rich Low_complexity Low_complexity 1 31 0 322 245 89 128 chr13 98163081 98163338 -3709831 - L2 LINE L2 0 3272 3026 233 217 11 98 chr13 98163667 98163759 -3709410 + L1ME1 LINE L1 6066 6149 -17 1628 88 108 0 chr13 98165454 98165694 -3707475 - AluY SINE Alu -11 300 35 1782 232 130 8 chr13 98165798 98166738 -3706431 - L1MC4 LINE L1 -743 5403 4930 214 326 43 11 chr13 98168212 98168304 -3704865 + MER5A DNA MER1_type 73 167 -22 2899 196 72 30 chr13 98169281 98169985 -3703184 + L1MB5 LINE L1 5441 6174 0 316 330 45 25 chr13 98171710 98171910 -3701259 - MIR SINE MIR -28 234 31 561 132 223 0 chr13 98174227 98174339 -3698830 - MER30 DNA MER1_type 0 230 92 462 86 14 14 chr13 98174339 98174409 -3698760 - THE1C LTR MaLR 0 375 306 31 0 0 0 chr13 98174568 98174599 -3698570 + AT_rich Low_complexity Low_complexity 1 31 0 796 248 49 8 chr13 98175331 98175577 -3697592 + LTR53 LTR ERVL 194 449 -70 347 253 20 80 chr13 98175807 98176056 -3697113 - L1MC5 LINE L1 -274 7687 7454 2013 162 0 0 chr13 98176429 98176725 -3696444 + AluJo SINE Alu 2 297 -15 410 234 136 65 chr13 98177893 98178201 -3694968 + L1ME4a LINE L1 5786 6115 -6 275 294 0 0 chr13 98181745 98181813 -3691356 + T-rich Low_complexity Low_complexity 3 70 0 1461 165 26 107 chr13 98182026 98182372 -3690797 + AluYb8 SINE Alu 1 318 0 184 307 57 34 chr13 98183201 98183289 -3689880 + L2 LINE L2 2113 2202 -1112 1891 184 58 6 chr13 98185355 98185702 -3687467 - MLT1A1 LTR MaLR 0 365 1 1370 129 26 26 chr13 98185702 98185966 -3687203 - MLT1A1-int LTR MaLR 0 1735 1472 244 343 7 50 chr13 98188271 98188411 -3684758 - L2 LINE L2 -928 2386 2253 687 226 5 0 chr13 98189145 98189573 -3683596 + (CA)n Simple_repeat Simple_repeat 1 430 0 483 273 80 7 chr13 98191202 98191352 -3681817 - MIR SINE MIR -82 180 20 589 240 16 0 chr13 98192341 98192470 -3680699 + MIR SINE MIR 106 236 -26 631 305 96 48 chr13 98193853 98194227 -3678942 + L2 LINE L2 2922 3313 0 245 211 77 0 chr13 98197136 98197188 -3675981 + MIR SINE MIR 98 153 -109 1261 252 28 35 chr13 98197662 98198126 -3675043 + L1MB7 LINE L1 5538 5998 -186 663 274 90 0 chr13 98202160 98202361 -3670808 - MIR SINE MIR -10 252 34 184 296 0 0 chr13 98202801 98202855 -3670314 - L3 LINE CR1 -465 1112 1059 2410 100 0 3 chr13 98203023 98203332 -3669837 - AluSx SINE Alu -4 308 1 364 336 162 13 chr13 98203361 98203831 -3669338 - L3 LINE CR1 -29 1548 1009 395 347 94 14 chr13 98203871 98204084 -3669085 - L3 LINE CR1 -702 875 646 1382 85 6 6 chr13 98205584 98205761 -3667408 - AluY SINE Alu -108 203 27 1752 186 0 7 chr13 98207216 98207525 -3665644 + AluJo SINE Alu 1 307 0 4302 176 39 37 chr13 98207777 98208731 -3664438 - L1MA9 LINE L1 -2 6310 5360 1872 148 26 13 chr13 98208731 98209035 -3664134 - AluJo SINE Alu -4 308 1 4302 176 39 37 chr13 98209035 98209374 -3663795 - L1MA9 LINE L1 -952 5360 5023 2091 105 7 11 chr13 98209374 98209659 -3663510 - AluSx SINE Alu -8 304 21 4302 176 39 37 chr13 98209659 98210079 -3663090 - L1MA9 LINE L1 -1289 5023 4577 397 242 109 30 chr13 98210113 98210278 -3662891 - LTR37A LTR ERV1 0 426 249 2757 79 3 6 chr13 98210413 98210769 -3662400 + THE1A LTR MaLR 1 355 0 1129 126 17 0 chr13 98210774 98210948 -3662221 + L1MA2 LINE L1 6128 6304 0 222 228 316 9 chr13 98211049 98211163 -3662006 + L2 LINE L2 3122 3270 -2 239 360 32 16 chr13 98211788 98211913 -3661256 - MIR SINE MIR -26 236 110 1804 161 3 11 chr13 98212305 98212642 -3660527 - AluJo SINE Alu 0 335 1 253 342 17 0 chr13 98213268 98213385 -3659784 + MIR SINE MIR 144 262 0 2282 114 7 0 chr13 98213804 98214111 -3659058 + AluSx SINE Alu 1 309 -3 335 309 28 16 chr13 98214338 98214524 -3658645 + MIR SINE MIR 61 250 -12 359 183 244 0 chr13 98214943 98215025 -3658144 - L1MDa LINE L1 -6260 280 179 2125 144 73 52 chr13 98215025 98215314 -3657855 + MER21A LTR ERV1 26 328 -603 2092 131 0 19 chr13 98215314 98215626 -3657543 - AluSx SINE Alu -6 306 1 2125 144 73 52 chr13 98215626 98215760 -3657409 + MER21A LTR ERV1 328 458 -473 1990 218 42 7 chr13 98215830 98216279 -3656890 + MER21A LTR ERV1 467 931 0 665 220 21 0 chr13 98216282 98216423 -3656746 - L1MDa LINE L1 -6372 168 25 1409 169 50 36 chr13 98217401 98217702 -3655467 + AluJo SINE Alu 1 305 -7 2274 107 0 0 chr13 98217702 98218011 -3655158 + AluSx SINE Alu 4 312 0 2282 68 0 0 chr13 98218014 98218342 -3654827 + AluY SINE Alu 1 328 0 949 160 16 46 chr13 98219061 98219255 -3653914 - MER58A DNA MER1_type 0 224 37 1673 156 31 28 chr13 98219439 98219727 -3653442 + AluJo SINE Alu 1 289 -23 27 0 0 0 chr13 98219727 98219754 -3653415 + AT_rich Low_complexity Low_complexity 1 27 0 258 317 48 42 chr13 98220889 98221056 -3652113 - L3 LINE CR1 -280 1297 1130 286 312 55 0 chr13 98221614 98221723 -3651446 - MIR SINE MIR -41 221 107 1012 202 107 72 chr13 98221841 98222130 -3651039 + MLT1D LTR MaLR 147 451 -54 1856 173 7 0 chr13 98222130 98222436 -3650733 - AluJb SINE Alu -3 309 2 1012 202 107 72 chr13 98222436 98222493 -3650676 + MLT1D LTR MaLR 451 505 0 1379 270 122 0 chr13 98222493 98223026 -3650143 + MLT1D-int LTR MaLR 1 598 -773 272 330 68 16 chr13 98223517 98223708 -3649461 + L2 LINE L2 3099 3299 -14 2221 95 7 0 chr13 98223986 98224281 -3648888 - AluSq SINE Alu -10 303 7 2376 76 3 0 chr13 98224300 98224601 -3648568 - AluSc SINE Alu -7 302 1 190 405 76 8 chr13 98227236 98227367 -3645802 + L2 LINE L2 3109 3248 -24 2503 46 3 3 chr13 98228315 98228622 -3644547 + AluY SINE Alu 1 307 -4 2641 70 121 5 chr13 98229675 98230072 -3643097 - LTR7 LTR ERV1 -7 443 1 2013 142 0 3 chr13 98230243 98230552 -3642617 + AluSx SINE Alu 1 308 -4 617 228 39 88 chr13 98230566 98230851 -3642318 + L1ME3 LINE L1 5679 5949 -213 2034 103 7 0 chr13 98231092 98231398 -3641771 - AluSx SINE Alu 0 308 1 590 283 63 0 chr13 98231671 98231830 -3641339 + MIR SINE MIR 21 189 -73 1588 177 0 20 chr13 98232021 98232341 -3640828 + AluJo SINE Alu 1 312 0 1007 199 104 29 chr13 98236807 98237123 -3636046 - MLT1A2 LTR MaLR -34 340 1 1077 24 0 0 chr13 98237666 98237791 -3635378 + AluY SINE Alu 171 295 -16 295 309 119 18 chr13 98238095 98238263 -3634906 + MIR3 SINE MIR 13 197 -11 347 296 191 0 chr13 98241197 98241359 -3631810 + MIR SINE MIR 70 262 0 232 307 99 10 chr13 98241669 98241770 -3631399 + L2 LINE L2 3204 3313 0 2688 90 30 8 chr13 98242265 98242632 -3630537 - THE1C LTR MaLR 0 375 1 2234 185 62 6 chr13 98243666 98244136 -3629033 + MER82 DNA MER2_type 3 498 -155 2053 202 39 51 chr13 98245241 98245394 -3627775 + L1MB3 LINE L1 5673 5826 -357 2016 138 7 0 chr13 98245394 98245698 -3627471 - AluSx SINE Alu -6 306 1 2053 202 39 51 chr13 98245698 98246054 -3627115 + L1MB3 LINE L1 5826 6176 -7 484 311 120 60 chr13 98247630 98247681 -3625488 + L3 LINE CR1 786 832 -745 2093 107 3 13 chr13 98247681 98247981 -3625188 - AluSx SINE Alu -15 297 1 484 311 120 60 chr13 98247981 98248142 -3625027 + L3 LINE CR1 832 982 -595 2347 54 3 0 chr13 98248142 98248439 -3624730 + AluY SINE Alu 1 298 -13 484 311 120 60 chr13 98248439 98248890 -3624279 + L3 LINE CR1 982 1490 -87 189 0 0 0 chr13 98249330 98249351 -3623818 + (TC)n Simple_repeat Simple_repeat 1 21 0 383 339 24 0 chr13 98251379 98251506 -3621663 + MER91A DNA MER1_type 15 144 -52 436 232 0 0 chr13 98251970 98252052 -3621117 - Tigger5 DNA MER2_type 0 2323 2242 278 208 0 0 chr13 98252049 98252102 -3621067 + Tigger5 DNA MER2_type 2265 2317 -6 * 416 169 13 0 chr13 98252105 98252182 -3620987 - Tigger5 DNA MER2_type -2245 78 1 234 0 0 0 chr13 98252316 98252342 -3620827 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 243 0 0 0 chr13 98252341 98252368 -3620801 + (CA)n Simple_repeat Simple_repeat 2 28 0 284 242 0 11 chr13 98253687 98253778 -3619391 + (TG)n Simple_repeat Simple_repeat 1 90 0 339 218 126 23 chr13 98254400 98254487 -3618682 - L1ME4a LINE L1 -7 6114 6019 2190 84 43 0 chr13 98256295 98256594 -3616575 + AluSq SINE Alu 1 312 -1 870 160 8 0 chr13 98256670 98256801 -3616368 + FLAM_C SINE Alu 1 132 -1 443 304 94 44 chr13 98256993 98257332 -3615837 - LTR16C LTR ERVL -13 478 123 568 156 23 47 chr13 98258844 98258972 -3614197 + L1MC3 LINE L1 6240 6364 -1421 249 230 126 11 chr13 98258975 98259062 -3614107 + AluSg/x SINE Alu 72 168 -134 245 48 0 0 chr13 98259062 98259104 -3614065 + Alu SINE Alu 259 300 0 2456 184 108 0 chr13 98259110 98259648 -3613521 + L1MC3 LINE L1 6419 7014 -771 1920 96 46 36 chr13 98259966 98260269 -3612900 - AluSx SINE Alu -6 306 1 199 253 105 21 chr13 98260468 98260563 -3612606 - MIR SINE MIR -80 182 80 1785 145 0 30 chr13 98264706 98265003 -3608166 + AluJo SINE Alu 15 302 -10 1606 168 7 0 chr13 98265387 98265673 -3607496 + AluJo SINE Alu 22 309 -3 343 279 57 8 chr13 98269421 98269543 -3603626 - Charlie8 DNA MER1_type -2264 153 26 609 223 32 19 chr13 98269629 98269786 -3603383 + Charlie4 DNA MER1_type 1 159 -1802 236 290 94 29 chr13 98269948 98270086 -3603083 + Charlie4 DNA MER1_type 1815 1961 0 1411 164 22 40 chr13 98270894 98270975 -3602194 + AluJo SINE Alu 44 125 -187 411 21 0 0 chr13 98270975 98271023 -3602146 + (CA)n Simple_repeat Simple_repeat 2 49 0 1411 164 22 40 chr13 98271023 98271215 -3601954 + AluJo SINE Alu 125 312 0 2212 104 13 0 chr13 98271218 98271516 -3601653 + AluSp SINE Alu 10 311 -2 186 162 0 54 chr13 98274186 98274223 -3598946 - MIR SINE MIR -116 146 112 453 296 146 5 chr13 98274497 98274717 -3598452 + MIR SINE MIR 1 251 -11 377 269 96 39 chr13 98275156 98275312 -3597857 - MER5B DNA MER1_type -10 168 4 2217 135 0 0 chr13 98275440 98275751 -3597418 - AluSx SINE Alu -1 311 1 1848 169 0 7 chr13 98275758 98276054 -3597115 - AluJo SINE Alu -17 295 2 1761 178 3 17 chr13 98276475 98276773 -3596396 + AluJo SINE Alu 1 294 -18 926 245 17 0 chr13 98277105 98277338 -3595831 + MLT2C2 LTR ERVL 28 264 -200 2015 135 0 0 chr13 98277927 98278209 -3594960 - AluJb SINE Alu -30 282 1 339 182 52 13 chr13 98278288 98278365 -3594804 - MER33 DNA MER1_type -244 80 1 806 256 58 58 chr13 98278993 98279426 -3593743 + MLT1C LTR MaLR 27 459 -8 1697 35 5 0 chr13 98279859 98280062 -3593107 - L1PA5 LINE L1 -3 6151 5948 1781 121 3 90 chr13 98280062 98280385 -3592784 - AluJo SINE Alu -17 295 1 239 318 164 23 chr13 98280804 98281018 -3592151 - MIR SINE MIR -18 244 1 208 226 0 19 chr13 98281047 98281074 -3592095 + A-rich Low_complexity Low_complexity 4 31 -24 1896 137 4 0 chr13 98281074 98281344 -3591825 + AluJb SINE Alu 42 312 0 208 226 0 19 chr13 98281344 98281369 -3591800 + A-rich Low_complexity Low_complexity 31 55 0 2060 145 26 0 chr13 98281399 98281703 -3591466 + AluJo SINE Alu 1 312 0 2588 70 0 9 chr13 98282618 98282934 -3590235 - AluSq SINE Alu 0 313 1 2509 64 3 0 chr13 98283535 98283832 -3589337 + AluSq SINE Alu 1 298 -15 258 43 43 0 chr13 98283832 98283878 -3589291 + L1MB4 LINE L1 6133 6180 0 207 0 0 0 chr13 98285273 98285296 -3587873 + (CCCCCG)n Simple_repeat Simple_repeat 1 23 0 2071 85 4 4 chr13 98285886 98286156 -3587013 - AluSg SINE Alu -1 309 40 2390 156 46 14 chr13 98286636 98287067 -3586102 - MER65A LTR ERV1 0 445 1 1009 157 6 23 chr13 98287124 98287296 -3585873 + AluJo SINE Alu 1 169 -143 507 239 136 11 chr13 98287298 98287474 -3585695 - L1M4 LINE L1 -1454 4692 4495 180 301 101 69 chr13 98287600 98287906 -3585263 + L2 LINE L2 2353 2668 -646 388 318 38 0 chr13 98288085 98288217 -3584952 + L2 LINE L2 3156 3292 -21 303 223 62 92 chr13 98288640 98288770 -3584399 + L2 LINE L2 3184 3309 -4 188 275 58 0 chr13 98288831 98288900 -3584269 + L2 LINE L2 3199 3271 -1 2316 108 0 0 chr13 98289367 98289663 -3583506 + AluSx SINE Alu 1 296 -16 209 312 40 50 chr13 98289736 98289935 -3583234 - L2 LINE L2 -61 3252 3056 2072 159 0 0 chr13 98290196 98290492 -3582677 - AluSx SINE Alu -16 296 1 1741 165 153 32 chr13 98290518 98290624 -3582545 - LTR47A LTR ERVL -1 451 359 2428 99 3 0 chr13 98290624 98290936 -3582233 + AluSq SINE Alu 1 313 0 1741 165 153 32 chr13 98290936 98291229 -3581940 - LTR47A LTR ERVL -93 359 4 208 279 89 38 chr13 98291954 98292033 -3581136 + L2 LINE L2 3152 3234 -38 1312 190 101 21 chr13 98292136 98292445 -3580724 + MLT1B LTR MaLR 1 319 -46 4542 101 3 11 chr13 98292445 98293062 -3580107 + LTR9 LTR ERV1 1 612 0 1312 190 101 21 chr13 98293062 98293110 -3580059 + MLT1B LTR MaLR 319 362 -3 2067 128 3 7 chr13 98293421 98293718 -3579451 + AluSx SINE Alu 4 299 -13 840 137 103 0 chr13 98293934 98294080 -3579089 + FAM SINE Alu 1 161 -14 1675 151 12 68 chr13 98294083 98294408 -3578761 - AluJb SINE Alu -5 307 1 552 122 7 5 chr13 98294529 98294675 -3578494 + AluSx SINE Alu 2 228 -82 467 148 0 0 chr13 98294832 98294913 -3578256 + AluSx SINE Alu 227 307 -5 333 244 56 11 chr13 98295443 98295533 -3577636 - MER5A DNA MER1_type -48 141 48 2163 113 7 0 chr13 98296630 98296923 -3576246 - AluSx SINE Alu -17 295 1 1123 216 44 86 chr13 98297612 98298019 -3575150 + MLT1B LTR MaLR 1 390 0 201 299 126 17 chr13 98298439 98298613 -3574556 - MIR SINE MIR -58 204 12 1035 209 70 0 chr13 98299852 98300053 -3573116 + AluJo SINE Alu 30 244 -68 1871 116 0 8 chr13 98300053 98300303 -3572866 - AluSx SINE Alu -64 248 1 605 203 99 11 chr13 98300313 98300495 -3572674 - L1MC2 LINE L1 0 6344 6147 * 1917 118 5 83 chr13 98300470 98300654 -3572515 - L1MC2 LINE L1 -128 6216 6077 1837 181 6 13 chr13 98300654 98300833 -3572336 - AluJb SINE Alu 0 312 134 2186 122 3 0 chr13 98300833 98301127 -3572042 - AluSc SINE Alu -14 295 1 1837 181 6 13 chr13 98301127 98301261 -3571908 - AluJb SINE Alu -178 134 1 1917 118 5 83 chr13 98301261 98301465 -3571704 - L1MC2 LINE L1 -267 6077 5859 2451 74 10 0 chr13 98301465 98301763 -3571406 + AluY SINE Alu 1 301 -10 600 228 90 0 chr13 98302204 98302309 -3570860 + MLT1C LTR MaLR 1 128 -339 2133 116 0 0 chr13 98302309 98302594 -3570575 - AluSx SINE Alu -11 301 17 600 228 90 0 chr13 98302594 98302655 -3570514 + MLT1C LTR MaLR 128 182 -285 1977 141 7 20 chr13 98302655 98302961 -3570208 - AluJb SINE Alu -10 302 1 1999 201 55 26 chr13 98302962 98303494 -3569675 - L1MDa LINE L1 -3212 3328 2782 2171 139 3 3 chr13 98303522 98303832 -3569337 - AluJo SINE Alu -2 310 1 4161 229 221 30 chr13 98303836 98304024 -3569145 - L1MDa LINE L1 -4333 2207 2056 2894 10 0 0 chr13 98304024 98304332 -3568837 + AluY SINE Alu 1 308 -3 4161 229 221 30 chr13 98304332 98305920 -3567249 - L1MDa LINE L1 -4484 2056 92 187 258 62 93 chr13 98305955 98306052 -3567117 - MIR SINE MIR -72 190 97 626 246 97 67 chr13 98306077 98306407 -3566762 - MLT1C LTR MaLR -92 375 36 30 0 0 0 chr13 98306511 98306541 -3566628 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chr13 98306824 98306855 -3566314 + (CA)n Simple_repeat Simple_repeat 2 32 0 1826 187 101 23 chr13 98307065 98307259 -3565910 + MSTB LTR MaLR 1 178 -248 240 35 0 0 chr13 98307259 98307288 -3565881 + (TC)n Simple_repeat Simple_repeat 1 29 0 1826 187 101 23 chr13 98307288 98307488 -3565681 + MSTB LTR MaLR 178 426 0 234 360 43 0 chr13 98307626 98307765 -3565404 - L1M4 LINE L1 -1306 4840 4696 * 1834 264 45 22 chr13 98307764 98307978 -3565191 - L1MB7 LINE L1 -119 6065 5857 2084 147 0 0 chr13 98307978 98308278 -3564891 - AluJb SINE Alu -12 300 1 1834 264 45 22 chr13 98308278 98308737 -3564432 - L1MB7 LINE L1 -327 5857 4430 1931 134 10 0 chr13 98308781 98309073 -3564096 + AluSx SINE Alu 5 299 -13 1044 133 17 39 chr13 98309178 98309358 -3563811 + AluSg/x SINE Alu 123 298 -12 414 192 40 0 chr13 98309371 98309470 -3563699 + L1MD1 LINE L1 2931 3033 -3113 1179 59 0 0 chr13 98309479 98309614 -3563555 + AluSq/x SINE Alu 1 135 -178 2200 100 7 7 chr13 98309614 98309927 -3563242 + AluSx SINE Alu 1 312 0 6733 221 30 48 chr13 98309929 98310579 -3562590 + L1MD1 LINE L1 3044 3704 -2538 2069 117 0 7 chr13 98310579 98310885 -3562284 + AluSx SINE Alu 1 304 0 6733 221 30 48 chr13 98310885 98310897 -3562272 + L1MD1 LINE L1 3704 3715 -2527 3013 3 0 0 chr13 98310897 98311213 -3561956 + AluYb8 SINE Alu 1 316 -2 6733 221 30 48 chr13 98311213 98312581 -3560588 + L1MD1 LINE L1 3715 4998 -1244 1829 161 46 0 chr13 98312581 98312861 -3560308 - AluJo SINE Alu -19 293 1 6733 221 30 48 chr13 98312861 98314061 -3559108 + L1MD1 LINE L1 4998 6218 -24 192 364 0 0 chr13 98314076 98314142 -3559027 + MIR SINE MIR 168 233 -29 288 125 54 0 chr13 98314144 98314200 -3558969 + MER81 DNA DNA 54 112 -2 1507 186 13 57 chr13 98315082 98315213 -3557956 + AluJo SINE Alu 1 136 -176 2480 96 0 0 chr13 98315213 98315525 -3557644 + AluSp SINE Alu 1 312 -1 1507 186 13 57 chr13 98315525 98315711 -3557458 + AluJo SINE Alu 136 304 -8 1686 149 52 48 chr13 98315769 98316078 -3557091 - AluJo SINE Alu 0 312 3 2439 91 0 3 chr13 98316645 98316952 -3556217 + AluSx SINE Alu 1 306 -6 1113 183 10 0 chr13 98317334 98317536 -3555633 - MER3 DNA MER1_type -5 204 1 866 180 88 115 chr13 98317572 98317945 -3555224 + MER34B LTR ERV1 5 367 -198 2283 107 13 7 chr13 98318005 98318315 -3554854 - AluSx SINE Alu 0 312 1 21 36 0 0 chr13 98318382 98318410 -3554759 + AT_rich Low_complexity Low_complexity 1 28 0 2293 113 0 0 chr13 98318416 98318709 -3554460 + AluSx SINE Alu 1 293 -19 282 147 23 155 chr13 98318714 98318759 -3554410 + MER34 LTR ERV1 431 480 -62 2328 106 0 3 chr13 98318759 98319062 -3554107 + AluSx SINE Alu 1 302 -10 282 147 23 155 chr13 98319062 98319145 -3554024 + MER34 LTR ERV1 480 542 0 1398 214 0 18 chr13 98319431 98319707 -3553462 - AluJo SINE Alu -6 306 36 1516 193 3 54 chr13 98319765 98320081 -3553088 + AluJb SINE Alu 1 300 -12 196 338 60 38 chr13 98320143 98320276 -3552893 - MIR3 SINE MIR -23 185 50 1257 193 13 0 chr13 98321367 98321606 -3551563 + L1MB3 LINE L1 5941 6182 -1 835 183 0 0 chr13 98321624 98321755 -3551414 + FLAM_C SINE Alu 3 133 0 1444 83 122 0 chr13 98322147 98322352 -3550817 - MER30 DNA MER1_type 0 230 1 846 162 0 0 chr13 98323140 98323276 -3549893 + FRAM SINE Alu 40 175 -1 2369 115 0 0 chr13 98323405 98323717 -3549452 - AluSx SINE Alu 0 312 1 297 72 0 0 chr13 98323753 98323801 -3549368 - MLT2D LTR ERVL 0 414 350 1540 182 103 3 chr13 98323841 98324181 -3548988 - MLT2D LTR ERVL -40 374 1 1755 161 11 3 chr13 98324452 98324573 -3548596 + AluJo SINE Alu 1 120 -192 257 75 25 0 chr13 98324573 98324613 -3548556 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 1755 161 11 3 chr13 98324613 98324777 -3548392 + AluJo SINE Alu 120 288 -24 427 183 12 0 chr13 98325037 98325119 -3548050 - LOR1-int LTR ERV1 -6481 1639 1557 2388 86 7 3 chr13 98325171 98325472 -3547697 + AluSc SINE Alu 1 302 -7 890 122 133 28 chr13 98325561 98325742 -3547427 + LTR30-int LTR ERV1 913 1112 -674 521 113 31 21 chr13 98325742 98325839 -3547330 + MER4A LTR ERV1 1 98 -566 1186 159 26 53 chr13 98325839 98325929 -3547240 + MER4A LTR ERV1 261 352 -312 2254 102 0 7 chr13 98325929 98326233 -3546936 + AluSp SINE Alu 1 302 -11 1186 159 26 53 chr13 98326233 98326497 -3546672 + MER4A LTR ERV1 352 664 0 459 139 45 54 chr13 98326497 98326608 -3546561 + LTR30-int LTR ERV1 1109 1613 -575 378 190 13 0 chr13 98326598 98326677 -3546492 + LTR30-int LTR ERV1 1506 1585 -6535 * 1164 98 0 64 chr13 98326679 98326852 -3546317 + AluSx SINE Alu 3 164 -148 268 130 13 39 chr13 98326852 98326911 -3546258 + LTR30-int LTR ERV1 1819 1877 -6243 1991 145 16 10 chr13 98326911 98327221 -3545948 + AluSx SINE Alu 1 312 0 363 53 240 27 chr13 98327221 98327248 -3545921 + PABL_A-int LTR ERV1 2436 2456 -2559 9514 87 16 9 chr13 98327248 98328317 -3544852 - HSMAR1 DNA Mariner -1 1286 204 2507 84 0 0 chr13 98328317 98328626 -3544543 + AluY SINE Alu 1 309 -2 9514 87 16 9 chr13 98328626 98328832 -3544337 - HSMAR1 DNA Mariner -1083 204 1 363 53 240 27 chr13 98328832 98328879 -3544290 + PABL_A-int LTR ERV1 2456 2526 -2489 457 174 0 0 chr13 98328882 98328951 -3544218 + AluJ/FLAM SINE Alu 3 71 -241 335 236 11 0 chr13 98328951 98329040 -3544129 + LTR30-int LTR ERV1 3941 4030 -2646 26 30 0 0 chr13 98329067 98329100 -3544069 + AT_rich Low_complexity Low_complexity 1 33 0 10434 24 3 180 chr13 98329137 98330821 -3542348 - SVA Other Other 0 1386 12 1668 170 117 92 chr13 98330822 98330848 -3542321 + LTR30-int LTR ERV1 3315 3339 -2992 2169 123 7 10 chr13 98330848 98331149 -3542020 + AluSx SINE Alu 1 300 -12 1668 170 117 92 chr13 98331149 98331934 -3541235 + LTR30-int LTR ERV1 3339 4177 -2154 2307 81 0 7 chr13 98331997 98332293 -3540876 - AluSg SINE Alu -16 294 1 775 135 38 130 chr13 98332424 98332609 -3540560 + LTR30-int LTR ERV1 3786 3953 -4167 2434 18 47 4 chr13 98332640 98332918 -3540251 + AluY SINE Alu 1 290 -21 350 147 261 6 chr13 98333085 98333183 -3539986 + LTR30-int LTR ERV1 3950 4285 -2313 1193 176 79 18 chr13 98333222 98333500 -3539669 + LTR30-int LTR ERV1 6375 6669 -89 418 182 0 0 chr13 98333620 98333697 -3539472 + LTR30-int LTR ERV1 7021 7097 -1023 653 175 27 87 chr13 98333699 98333882 -3539287 + MER4D LTR ERV1 1 172 -700 719 258 88 22 chr13 98333954 98334272 -3538897 + LTR30-int LTR ERV1 6311 6649 -27 1989 163 0 0 chr13 98334294 98334595 -3538574 + AluJb SINE Alu 11 311 -1 914 265 26 18 chr13 98334841 98335113 -3538056 + MER41E LTR ERV1 233 506 -6 456 272 48 14 chr13 98335121 98335268 -3537901 - L2 LINE L2 -484 2830 2679 834 223 45 14 chr13 98335302 98335522 -3537647 + MLT1B LTR MaLR 1 227 -163 4039 132 109 24 chr13 98335533 98335926 -3537243 + MER4D LTR ERV1 59 417 -486 1988 158 3 0 chr13 98335926 98336230 -3536939 + AluSx SINE Alu 3 307 -5 4039 132 109 24 chr13 98336230 98336615 -3536554 + MER4D LTR ERV1 417 903 0 338 184 18 61 chr13 98336654 98336768 -3536401 - MER57A LTR ERV1 0 403 295 937 109 70 0 chr13 98336949 98337105 -3536064 - MER41A LTR ERV1 0 554 388 243 175 0 0 chr13 98337133 98337173 -3535996 + LTR30 LTR ERV1 13 52 -670 955 134 89 198 chr13 98337173 98337512 -3535657 + LTR12 LTR ERV1 53 561 -153 2522 64 0 0 chr13 98337512 98337810 -3535359 - AluY SINE Alu -13 298 1 955 134 89 198 chr13 98337810 98337949 -3535220 + LTR12 LTR ERV1 561 714 0 2814 138 20 2 chr13 98337950 98338398 -3534771 - MER41B LTR ERV1 -179 456 1 1084 181 5 25 chr13 98338403 98338607 -3534562 - AluJo SINE Alu -112 200 1 208 210 32 81 chr13 98338691 98338815 -3534354 - L2 LINE L2 -825 2489 2372 27 49 0 0 chr13 98339417 98339458 -3533711 + GC_rich Low_complexity Low_complexity 1 41 0 253 324 57 9 chr13 98340313 98340418 -3532751 - MIR SINE MIR -92 170 61 280 281 98 0 chr13 98341356 98341438 -3531731 + MIR SINE MIR 60 149 -113 708 189 47 30 chr13 98343210 98343379 -3529790 + MER20 DNA MER1_type 2 173 -46 2195 113 0 3 chr13 98343408 98343690 -3529479 - AluSx SINE Alu -21 291 11 256 258 151 0 chr13 98343728 98343821 -3529348 - LTR33A LTR ERVL -347 176 70 22 56 0 0 chr13 98343903 98343939 -3529230 + AT_rich Low_complexity Low_complexity 1 36 0 504 0 0 0 chr13 98344266 98344322 -3528847 + (TA)n Simple_repeat Simple_repeat 2 57 0 297 338 63 19 chr13 98344323 98344640 -3528529 - L1MEc LINE L1 -4756 1640 1310 429 136 0 0 chr13 98344641 98344700 -3528469 - AluS SINE Alu -258 60 2 421 283 99 78 chr13 98344708 98345181 -3527988 - L1MEc LINE L1 -5173 1032 550 205 372 109 13 chr13 98345648 98345804 -3527365 + L2 LINE L2 3099 3269 -3 2347 107 0 0 chr13 98345843 98346142 -3527027 - AluSq SINE Alu -14 299 1 24 0 0 0 chr13 98346419 98346443 -3526726 + AT_rich Low_complexity Low_complexity 1 24 0 257 331 75 60 chr13 98346542 98346808 -3526361 - L2 LINE L2 -1 3271 3002 1803 161 13 20 chr13 98346917 98347216 -3525953 - AluSx SINE Alu -15 297 1 22 35 0 0 chr13 98347486 98347515 -3525654 + AT_rich Low_complexity Low_complexity 1 29 0 306 190 75 35 chr13 98347758 98347946 -3525223 + Charlie7 DNA MER1_type 43 2581 -31 241 277 113 50 chr13 98349339 98349498 -3523671 + MIR SINE MIR 23 191 -71 426 111 28 0 chr13 98349618 98349690 -3523479 + L1PA16 LINE L1 6078 6151 -15 1631 197 14 7 chr13 98349796 98350085 -3523084 - AluJo SINE Alu -21 291 1 248 316 46 20 chr13 98350720 98350872 -3522297 + L1ME LINE L1 5537 5692 -429 476 167 0 0 chr13 98350910 98350988 -3522181 - AluSp/q SINE Alu -37 276 199 2429 90 0 0 chr13 98351232 98351531 -3521638 + AluSc SINE Alu 1 299 -10 2202 102 3 0 chr13 98352347 98352641 -3520528 + AluSx SINE Alu 3 297 -15 2234 130 0 0 chr13 98352679 98352978 -3520191 + AluSx SINE Alu 1 299 -13 2472 83 3 0 chr13 98354652 98354952 -3518217 + AluSp SINE Alu 1 301 -12 2297 78 0 10 chr13 98355398 98355693 -3517476 - AluSp SINE Alu -21 292 1 249 249 316 29 chr13 98357160 98357746 -3515423 - L2 LINE L2 -733 2581 1828 521 283 55 14 chr13 98358002 98358221 -3514948 + L1MD3 LINE L1 7709 7936 -59 221 279 13 13 chr13 98360086 98360165 -3513004 - MIR SINE MIR -65 197 119 2188 241 83 23 chr13 98360224 98360948 -3512221 - L1MB7 LINE L1 0 6184 5505 2059 128 7 0 chr13 98360948 98361259 -3511910 - AluSx SINE Alu 0 313 1 2188 241 83 23 chr13 98361259 98362036 -3511133 - L1MB7 LINE L1 -679 5505 4532 190 274 39 0 chr13 98362049 98362100 -3511069 - MIR SINE MIR -201 61 9 276 278 219 42 chr13 98362102 98362408 -3510761 - L1MC4a LINE L1 -1910 5898 5539 5592 114 101 115 chr13 98362941 98364526 -3508643 - pTR5 LTR ERV1 0 2438 743 242 260 143 0 chr13 98364812 98364889 -3508280 - MER99 DNA DNA -727 101 14 697 197 68 6 chr13 98365147 98365438 -3507731 - MSTD LTR MaLR 0 396 1 419 272 143 0 chr13 98365943 98366090 -3507079 + MIR SINE MIR 88 255 -7 289 198 81 47 chr13 98366887 98366973 -3506196 + Tigger8 DNA MER2_type 218 306 -360 299 376 6 0 chr13 98367253 98367426 -3505743 + (CA)n Simple_repeat Simple_repeat 1 174 0 190 253 133 0 chr13 98367805 98367880 -3505289 + MIR SINE MIR 61 145 -117 203 267 27 40 chr13 98368383 98368458 -3504711 - MER5B DNA MER1_type -102 76 3 2227 98 3 20 chr13 98372853 98373150 -3500019 + AluSp SINE Alu 1 292 -21 315 271 78 23 chr13 98374722 98374851 -3498318 + L1MC4a LINE L1 7162 7282 -526 230 180 20 0 chr13 98374938 98374988 -3498181 + L1MC4 LINE L1 7850 7900 -142 2096 134 20 0 chr13 98380953 98381126 -3492043 - AluSx SINE Alu 0 312 129 2094 154 0 0 chr13 98381126 98381425 -3491744 - AluSx SINE Alu -13 299 1 2096 134 20 0 chr13 98381425 98381557 -3491612 - AluSx SINE Alu -183 129 1 319 297 20 0 chr13 98383836 98383937 -3489232 + Charlie4 DNA MER1_type 38 140 -1821 489 234 18 0 chr13 98384091 98384202 -3488967 + Charlie4 DNA MER1_type 1820 1932 -29 261 57 0 0 chr13 98384224 98384259 -3488910 + (TG)n Simple_repeat Simple_repeat 1 35 0 1809 152 19 32 chr13 98385663 98385979 -3487190 + AluJo SINE Alu 1 312 0 265 332 83 39 chr13 98386112 98386341 -3486828 + L1ME LINE L1 5586 5824 -297 225 279 101 0 chr13 98386402 98386481 -3486688 + L1MB7 LINE L1 5737 5823 -1985 2159 124 23 0 chr13 98387051 98387350 -3485819 + AluSx SINE Alu 1 306 -6 1045 183 32 28 chr13 98387501 98387630 -3485539 + L1MB7 LINE L1 5932 6064 -120 2634 57 0 0 chr13 98387630 98387929 -3485240 + AluY SINE Alu 1 299 -12 1045 183 32 28 chr13 98387929 98388051 -3485118 + L1MB7 LINE L1 6064 6184 0 1200 274 118 70 chr13 98388072 98389197 -3483972 + L1MC4 LINE L1 6372 7442 -600 1784 139 63 22 chr13 98389197 98389563 -3483606 + L1MB2 LINE L1 5791 6171 0 1200 274 118 70 chr13 98389563 98389667 -3483502 + L1MC4 LINE L1 7442 7540 -502 2202 109 19 19 chr13 98389667 98389978 -3483191 + AluSx SINE Alu 1 311 -1 1200 274 118 70 chr13 98389978 98390139 -3483030 + L1MC4 LINE L1 7540 7910 -132 711 211 172 39 chr13 98390220 98390505 -3482664 + MER34C LTR ERV1 36 358 -227 14303 114 54 12 chr13 98390556 98391787 -3481382 - Tigger1 DNA MER2_type 0 2418 1240 2357 104 7 0 chr13 98391787 98392086 -3481083 - AluSg SINE Alu -9 301 1 14303 114 54 12 chr13 98392086 98393168 -3480001 - Tigger1 DNA MER2_type -1178 1240 8 1852 149 0 32 chr13 98395245 98395554 -3477615 + AluJo SINE Alu 1 299 -13 678 243 26 8 chr13 98395694 98396011 -3477158 + MLT1A1 LTR MaLR 1 359 -6 1836 150 11 4 chr13 98396196 98396476 -3476693 + AluSx SINE Alu 9 290 -22 2130 123 0 3 chr13 98398452 98398752 -3474417 + AluSq SINE Alu 1 299 -14 346 180 190 40 chr13 98399101 98399201 -3473968 + L2 LINE L2 3192 3306 -7 2185 101 20 3 chr13 98399570 98399867 -3473302 - AluSx SINE Alu -10 302 1 26 0 0 0 chr13 98400884 98400910 -3472259 + GC_rich Low_complexity Low_complexity 1 26 0 23 68 0 0 chr13 98401955 98401999 -3471170 + GC_rich Low_complexity Low_complexity 1 44 0 34 93 0 0 chr13 98402209 98402306 -3470863 + GC_rich Low_complexity Low_complexity 1 97 0 23 86 0 0 chr13 98402659 98402717 -3470452 + GC_rich Low_complexity Low_complexity 1 58 0 186 43 0 0 chr13 98403313 98403336 -3469833 + (GGGAA)n Simple_repeat Simple_repeat 5 27 0 22 0 0 0 chr13 98405413 98405435 -3467734 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr13 98405608 98405630 -3467539 + AT_rich Low_complexity Low_complexity 1 22 0 2258 91 10 3 chr13 98405899 98406196 -3466973 + AluSp SINE Alu 1 299 -14 1000 177 11 0 chr13 98406609 98406784 -3466385 + AluJb SINE Alu 120 296 -16 313 218 10 69 chr13 98407047 98407148 -3466021 + L1MCa LINE L1 1970 2064 -4362 315 0 0 0 chr13 98407374 98407409 -3465760 + (TTGTG)n Simple_repeat Simple_repeat 1 35 0 950 206 46 0 chr13 98409371 98409565 -3463604 + MER58B DNA MER1_type 139 341 0 2195 91 47 3 chr13 98409619 98409916 -3463253 - AluSp SINE Alu -3 310 1 2373 87 7 0 chr13 98409920 98410220 -3462949 - AluSc SINE Alu -1 308 7 2074 137 7 7 chr13 98412574 98412881 -3460288 - AluSg SINE Alu -3 307 1 2454 100 0 0 chr13 98412938 98413249 -3459920 - AluSq SINE Alu -2 311 1 192 77 0 0 chr13 98413259 98413285 -3459884 + (T)n Simple_repeat Simple_repeat 1 26 0 2422 92 3 16 chr13 98413323 98413640 -3459529 - AluSp SINE Alu 0 313 1 2354 86 33 0 chr13 98414334 98414637 -3458532 - AluSp SINE Alu 0 313 1 187 333 80 0 chr13 98414738 98414813 -3458356 + MIR SINE MIR 86 166 -96 367 308 0 10 chr13 98415175 98415279 -3457890 - MIR3 SINE MIR -43 165 63 218 159 0 63 chr13 98415615 98415678 -3457491 + (TAATG)n Simple_repeat Simple_repeat 2 60 0 62 14 0 0 chr13 98415715 98415784 -3457385 + AT_rich Low_complexity Low_complexity 1 69 0 2071 123 0 3 chr13 98416212 98416496 -3456673 + AluSg SINE Alu 1 283 -27 715 223 173 21 chr13 98418684 98418967 -3454202 + MER67C LTR ERV1 3 328 -382 1587 163 109 6 chr13 98418988 98419319 -3453850 + MLT1A1 LTR MaLR 1 365 0 857 143 137 6 chr13 98419319 98419494 -3453675 + MER67C LTR ERV1 513 710 0 2308 81 7 52 chr13 98419597 98419906 -3453263 + AluSx SINE Alu 2 296 -16 207 100 0 0 chr13 98420587 98420617 -3452552 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2385 48 3 0 chr13 98421140 98421433 -3451736 + AluY SINE Alu 1 294 -17 21 57 0 0 chr13 98422374 98422409 -3450760 + AT_rich Low_complexity Low_complexity 1 35 0 42185 58 7 3 chr13 98422476 98428458 -3444711 + L1PA5 LINE L1 11 6015 -139 28525 47 5 2 chr13 98428558 98432894 -3440275 + L1PA5 LINE L1 1804 6152 -2 2194 75 7 0 chr13 98433050 98433343 -3439826 + AluSp SINE Alu 1 295 -18 296 227 0 100 chr13 98436308 98436418 -3436751 + L1MC5 LINE L1 6636 6734 -1227 2311 99 0 0 chr13 98436424 98436737 -3436432 + AluSq SINE Alu 1 313 0 453 145 0 0 chr13 98436737 98436813 -3436356 + (GA)n Simple_repeat Simple_repeat 1 76 0 326 669 0 0 chr13 98436827 98436978 -3436191 + polypurine Low_complexity Low_complexity 2 152 0 1116 269 74 60 chr13 98437041 98437390 -3435779 + L1MC5 LINE L1 6787 7130 -831 1900 111 0 44 chr13 98437390 98437711 -3435458 + AluSx SINE Alu 1 308 0 1116 269 74 60 chr13 98437711 98438074 -3435095 + L1MC5 LINE L1 7130 7510 -451 818 144 0 36 chr13 98438358 98438497 -3434672 - AluJo SINE Alu -178 134 1 23 86 0 0 chr13 98438687 98438745 -3434424 + AT_rich Low_complexity Low_complexity 1 58 0 3118 190 56 3 chr13 98438749 98439511 -3433658 + L1MC1 LINE L1 5497 6333 0 783 208 27 0 chr13 98440566 98440715 -3432454 - FRAM SINE Alu -24 152 1 904 136 0 0 chr13 98441028 98441168 -3432001 + FLAM_C SINE Alu 1 140 -3 22 70 0 0 chr13 98442030 98442073 -3431096 + AT_rich Low_complexity Low_complexity 1 43 0 960 67 0 0 chr13 98442286 98442406 -3430763 + AluSg/x SINE Alu 174 293 -17 267 133 0 0 chr13 98443067 98443112 -3430057 + (A)n Simple_repeat Simple_repeat 1 45 0 1916 132 0 16 chr13 98443325 98443629 -3429540 - AluJo SINE Alu -13 299 1 1670 173 7 3 chr13 98443640 98443940 -3429229 - AluSx SINE Alu -11 301 1 564 96 0 0 chr13 98443978 98444051 -3429118 - AluSc SINE Alu -32 277 205 2168 100 0 34 chr13 98444470 98444791 -3428378 + AluSg SINE Alu 1 310 0 695 256 0 6 chr13 98445385 98445549 -3427620 + FRAM SINE Alu 1 163 -3 1819 161 0 3 chr13 98445709 98446020 -3427149 + AluSx SINE Alu 1 310 -2 2030 130 0 0 chr13 98447029 98447336 -3425833 + AluY SINE Alu 1 307 -4 309 336 120 30 chr13 98447723 98448094 -3425075 - L1MC/D LINE L1 -2119 5689 5278 2123 125 0 0 chr13 98448094 98448398 -3424771 - AluSp SINE Alu -9 304 1 309 336 120 30 chr13 98448398 98448425 -3424744 - L1MC/D LINE L1 -2530 5278 5255 22 0 0 0 chr13 98449070 98449092 -3424077 + AT_rich Low_complexity Low_complexity 1 22 0 375 311 0 0 chr13 98449092 98449182 -3423987 + L1MC4 LINE L1 6614 6703 -1339 * 403 220 0 92 chr13 98449122 98449231 -3423938 - L1MC4 LINE L1 -1339 6703 6605 2282 91 0 3 chr13 98449270 98449578 -3423591 + AluSp SINE Alu 1 307 -6 1217 171 5 9 chr13 98449692 98449903 -3423266 + AluJb SINE Alu 79 288 -24 2299 95 0 0 chr13 98449913 98450219 -3422950 + AluSg SINE Alu 1 306 -4 953 180 0 6 chr13 98450367 98450539 -3422630 + AluSg/x SINE Alu 132 302 -10 29 0 0 0 chr13 98450670 98450699 -3422470 + AT_rich Low_complexity Low_complexity 1 29 0 374 240 0 0 chr13 98450808 98450883 -3422286 - MER2 DNA MER2_type 0 345 271 1725 179 7 0 chr13 98450884 98451186 -3421983 + AluJb SINE Alu 2 305 -7 996 124 51 11 chr13 98451199 98451376 -3421793 - MER2 DNA MER2_type -134 211 28 478 200 19 0 chr13 98451399 98451504 -3421665 + L1MB3 LINE L1 5766 5872 -311 449 125 0 0 chr13 98451511 98451583 -3421586 + L1MB4 LINE L1 6086 6157 -23 6058 41 12 5 chr13 98451658 98452393 -3420776 - L1PA7 LINE L1 0 6154 5415 226 292 123 51 chr13 98453294 98453333 -3419836 + L1MC/D LINE L1 5611 5646 -2162 1711 138 39 3 chr13 98453333 98453615 -3419554 - AluSx SINE Alu -20 292 1 226 292 123 51 chr13 98453615 98453770 -3419399 + L1MC/D LINE L1 5646 5819 -1989 2301 81 0 0 chr13 98454120 98454416 -3418753 + AluSq SINE Alu 1 296 -17 1360 186 101 50 chr13 98454451 98454604 -3418565 + MSTD LTR MaLR 1 145 -251 1794 145 3 29 chr13 98454604 98454914 -3418255 + AluJo SINE Alu 1 302 -10 1360 186 101 50 chr13 98454914 98455137 -3418032 + MSTD LTR MaLR 145 396 0 312 264 190 18 chr13 98456020 98456183 -3416986 + L1MC4 LINE L1 7415 7631 -203 294 222 6 26 chr13 98456406 98456482 -3416687 + L1MC4 LINE L1 7685 8035 -7 1981 123 17 3 chr13 98456945 98457246 -3415923 - AluSq SINE Alu -8 305 1 250 273 202 0 chr13 98457711 98457810 -3415359 + MIR SINE MIR 118 236 -26 29 28 0 0 chr13 98458368 98458404 -3414765 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr13 98458566 98458587 -3414582 + GC_rich Low_complexity Low_complexity 1 21 0 2164 102 0 0 chr13 98459762 98460057 -3413112 + AluSx SINE Alu 1 295 -17 1041 145 17 0 chr13 98460967 98461139 -3412030 - AluSg/x SINE Alu -13 299 125 2107 116 0 25 chr13 98461139 98461459 -3411710 - AluSx SINE Alu 0 312 1 1979 99 9 52 chr13 98461466 98461790 -3411379 - AluSp SINE Alu -2 311 2 1622 70 0 70 chr13 98461954 98462195 -3410974 + MLT2A1 LTR ERVL 221 444 0 274 59 0 0 chr13 98462496 98462530 -3410639 + Alu SINE Alu 1 34 -267 651 103 0 0 chr13 98462631 98462728 -3410441 + (CATATA)n Simple_repeat Simple_repeat 6 102 0 404 235 58 60 chr13 98463030 98463258 -3409911 + L1MCc LINE L1 25 596 -5826 1169 275 59 33 chr13 98463717 98464002 -3409167 + L1MCc LINE L1 819 1124 -5299 4768 227 98 63 chr13 98464002 98465696 -3407473 - MER52A LTR ERV1 -1 1754 1 1169 275 59 33 chr13 98465696 98465922 -3407247 + L1MCc LINE L1 1124 1343 -5080 2134 98 3 46 chr13 98466375 98466701 -3406468 - AluSx SINE Alu 0 312 1 1189 171 0 22 chr13 98467457 98467679 -3405490 - AluJb SINE Alu -14 298 82 563 294 63 24 chr13 98467873 98468235 -3404934 + MLT1K LTR MaLR 142 552 -36 1969 113 48 0 chr13 98468332 98468658 -3404511 - AluSx SINE Alu 0 340 1 838 290 128 18 chr13 98468697 98469169 -3404000 + MLT1G1 LTR MaLR 4 595 0 553 357 41 35 chr13 98469189 98469508 -3403661 - L1MC4a LINE L1 -1863 5945 5625 672 126 0 10 chr13 98469534 98469637 -3403532 + LTR47A LTR ERVL 1 102 -350 274 203 65 14 chr13 98469736 98469826 -3403343 + (TA)n Simple_repeat Simple_repeat 1 102 -43 1949 123 3 23 chr13 98469826 98470134 -3403035 - AluSx SINE Alu -10 302 1 274 203 65 14 chr13 98470134 98470181 -3402988 + (TA)n Simple_repeat Simple_repeat 102 145 0 495 255 70 60 chr13 98470566 98470750 -3402419 + MIR SINE MIR 5 193 -69 1759 124 90 34 chr13 98470750 98471105 -3402064 - THE1C LTR MaLR 0 375 1 495 255 70 60 chr13 98471105 98471120 -3402049 + MIR SINE MIR 193 206 -56 2183 127 141 5 chr13 98471391 98471768 -3401401 - MSTA LTR MaLR 0 428 1 357 294 103 61 chr13 98471782 98472421 -3400748 - L1M4 LINE L1 -1567 4579 3914 916 187 0 0 chr13 98472471 98472626 -3400543 - FRAM SINE Alu -13 163 9 1974 125 0 0 chr13 98472798 98473070 -3400099 - AluSx SINE Alu -24 288 17 441 0 0 0 chr13 98473136 98473185 -3399984 + (TG)n Simple_repeat Simple_repeat 1 49 0 2205 119 0 0 chr13 98473398 98473700 -3399469 - AluSx SINE Alu -10 302 1 344 262 149 38 chr13 98473751 98473985 -3399184 - L1M4 LINE L1 -2727 3419 3212 2139 138 3 0 chr13 98473985 98474290 -3398879 - AluSx SINE Alu -6 306 1 344 262 149 38 chr13 98474290 98474559 -3398610 - L1M4 LINE L1 -2934 3212 2860 2358 94 7 0 chr13 98474656 98474953 -3398216 - AluSc SINE Alu -10 299 1 375 188 28 44 chr13 98475147 98475328 -3397841 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 1680 165 179 8 chr13 98475331 98475694 -3397475 + MSTA LTR MaLR 2 426 -2 9911 131 19 34 chr13 98475701 98477299 -3395870 + MSTA-int LTR MaLR 7 1580 0 2093 142 119 16 chr13 98477299 98477687 -3395482 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr13 98477742 98477764 -3395405 + (TG)n Simple_repeat Simple_repeat 1 22 0 2248 193 31 7 chr13 98477894 98478344 -3394825 - MER65C LTR ERV1 0 461 1 463 331 25 25 chr13 98478537 98478818 -3394351 - MER65C-int LTR ERV1 -211 4660 4380 1697 244 64 23 chr13 98478914 98478964 -3394205 - MER65C-int LTR ERV1 -698 4173 4127 1884 157 3 20 chr13 98478964 98479263 -3393906 - AluSx SINE Alu -17 295 2 1697 244 64 23 chr13 98479263 98479651 -3393518 - MER65C-int LTR ERV1 -744 4127 3717 294 269 43 11 chr13 98479631 98479724 -3393445 - MER83B-int LTR ERV1 -680 5651 5556 * 259 163 143 0 chr13 98479736 98479785 -3393384 - MER83B-int LTR ERV1 -939 5392 5337 1611 206 3 7 chr13 98479902 98480208 -3392961 - AluJo SINE Alu -7 305 1 2541 208 106 75 chr13 98480209 98480421 -3392748 - MER83B-int LTR ERV1 -1229 5102 4898 2474 92 53 11 chr13 98480421 98480781 -3392388 - THE1C LTR MaLR 0 375 1 10551 115 32 7 chr13 98480781 98482321 -3390848 - THE1C-int LTR MaLR 0 1580 1 2741 92 16 5 chr13 98482323 98482692 -3390477 - THE1C LTR MaLR -2 373 1 2541 208 106 75 chr13 98482692 98483001 -3390168 - MER83B-int LTR ERV1 -1433 4898 4600 2187 141 0 0 chr13 98483001 98483306 -3389863 - AluSx SINE Alu -7 305 1 2541 208 106 75 chr13 98483306 98483728 -3389441 - MER83B-int LTR ERV1 -1731 4600 4193 1835 195 0 0 chr13 98483728 98484030 -3389139 + AluJo SINE Alu 1 302 -10 2541 208 106 75 chr13 98484030 98484404 -3388765 - MER83B-int LTR ERV1 -2138 4193 2483 841 183 43 43 chr13 98484484 98484719 -3388450 - MER83B-int LTR ERV1 -2868 3730 3496 469 312 49 70 chr13 98484889 98485258 -3387911 - MER83B-int LTR ERV1 -1697 3183 2075 27 62 0 0 chr13 98485268 98485316 -3387853 + AT_rich Low_complexity Low_complexity 1 48 0 24 96 0 0 chr13 98485403 98485476 -3387693 + AT_rich Low_complexity Low_complexity 1 73 0 2310 162 40 16 chr13 98485934 98486379 -3386790 - MER65C LTR ERV1 -5 456 1 222 37 0 0 chr13 98486708 98486735 -3386434 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1733 154 32 25 chr13 98486891 98487171 -3385998 - AluJo SINE Alu -30 282 1 2073 135 13 0 chr13 98487174 98487477 -3385692 - AluSx SINE Alu -4 308 2 261 118 0 59 chr13 98487956 98488024 -3385145 + (TTTC)n Simple_repeat Simple_repeat 1 64 0 1312 153 0 0 chr13 98488297 98488493 -3384676 + AluJo SINE Alu 1 196 -116 448 349 28 14 chr13 98488554 98488766 -3384403 - LTR33 LTR ERVL -304 217 3 1265 94 0 0 chr13 98488942 98489101 -3384068 - AluSg/x SINE Alu -16 296 138 364 297 64 50 chr13 98489103 98489305 -3383864 - L1MEc LINE L1 -4029 2367 2163 278 318 127 21 chr13 98489308 98489497 -3383672 - LTR33A LTR ERVL 0 523 315 2069 129 7 0 chr13 98489531 98489818 -3383351 - AluSx SINE Alu -13 299 11 282 258 151 0 chr13 98489856 98489949 -3383220 - LTR33A LTR ERVL -347 176 70 22 56 0 0 chr13 98490031 98490067 -3383102 + AT_rich Low_complexity Low_complexity 1 36 0 504 0 0 0 chr13 98490394 98490450 -3382719 + (TA)n Simple_repeat Simple_repeat 2 57 0 361 311 66 22 chr13 98490450 98490768 -3382401 - L1MEc LINE L1 -4755 1641 1310 411 136 0 0 chr13 98490769 98490828 -3382341 - AluS SINE Alu -258 60 2 551 288 89 68 chr13 98490836 98491309 -3381860 - L1MEc LINE L1 -5173 1032 550 2326 107 0 0 chr13 98491971 98492270 -3380899 - AluSq SINE Alu -14 299 1 24 0 0 0 chr13 98492547 98492571 -3380598 + AT_rich Low_complexity Low_complexity 1 24 0 201 311 123 0 chr13 98492670 98492776 -3380393 - L2 LINE L2 -1 3271 3153 1774 164 14 3 chr13 98493058 98493344 -3379825 - AluSx SINE Alu -23 289 1 22 35 0 0 chr13 98493614 98493643 -3379526 + AT_rich Low_complexity Low_complexity 1 29 0 328 190 75 35 chr13 98493886 98494074 -3379095 + Charlie7 DNA MER1_type 43 2581 -31 429 111 28 0 chr13 98495745 98495817 -3377352 + L1PA16 LINE L1 6078 6151 -15 1596 197 14 7 chr13 98495923 98496212 -3376957 - AluJo SINE Alu -21 291 1 273 316 46 20 chr13 98496847 98496999 -3376170 + L1ME LINE L1 5537 5692 -429 2045 120 0 0 chr13 98497037 98497313 -3375856 - AluSq SINE Alu -37 276 1 253 265 109 63 chr13 98497467 98497705 -3375464 - MER110-int LTR ERV1 -1460 5341 5093 681 245 38 0 chr13 98497815 98497974 -3375195 + MLT1D LTR MaLR 39 203 -302 512 256 81 0 chr13 98498011 98498183 -3374986 + MLT1D LTR MaLR 320 505 0 668 193 169 38 chr13 98498918 98499017 -3374152 - MER110-int LTR ERV1 -3953 983 898 2094 149 59 47 chr13 98499017 98499365 -3373804 + MSTA LTR MaLR 1 356 -72 2287 119 0 6 chr13 98499365 98499677 -3373492 - AluSx SINE Alu 0 312 3 2094 149 59 47 chr13 98499677 98499751 -3373418 + MSTA LTR MaLR 356 428 0 668 193 169 38 chr13 98499751 98499864 -3373305 - MER110-int LTR ERV1 -4038 898 743 31 68 0 0 chr13 98500129 98500188 -3372981 + AT_rich Low_complexity Low_complexity 1 59 0 2757 169 26 2 chr13 98500975 98501467 -3371702 - L1MB3 LINE L1 -32 6151 5648 267 310 86 17 chr13 98501826 98502000 -3371169 - MER110-int LTR ERV1 -3321 3480 3295 2838 132 9 5 chr13 98502219 98502645 -3370524 + MSTA LTR MaLR 1 428 0 2272 178 31 7 chr13 98503028 98503444 -3369725 + MSTB LTR MaLR 1 426 0 288 329 89 7 chr13 98503447 98503593 -3369576 - MER110-int LTR ERV1 -4085 562 405 918 236 62 0 chr13 98505328 98505598 -3367571 + L1M4 LINE L1 3468 3752 -2394 210 224 0 30 chr13 98505959 98506026 -3367143 + T-rich Low_complexity Low_complexity 2 66 0 4499 169 29 6 chr13 98506026 98506843 -3366326 + L1MC1 LINE L1 5497 6332 -1 1463 265 53 30 chr13 98506915 98507424 -3365745 - L1ME1 LINE L1 -5 6161 5641 1530 96 14 0 chr13 98507511 98507730 -3365439 - L1PB1 LINE L1 -2 6149 5928 537 208 132 35 chr13 98507733 98507877 -3365292 - FRAM SINE Alu -18 158 1 1878 159 7 0 chr13 98508844 98509140 -3364029 - AluJb SINE Alu -14 298 1 1444 262 20 10 chr13 98509561 98509954 -3363215 - MER119 DNA MER1_type 0 583 187 1635 249 42 15 chr13 98511299 98511753 -3361416 - L1MD3 LINE L1 -2 7993 7528 816 296 72 13 chr13 98511751 98511935 -3361234 - L1MB3 LINE L1 -490 5680 5508 * 1489 211 24 61 chr13 98511935 98512158 -3361011 - MLT1A1 LTR MaLR 0 365 160 2033 152 0 0 chr13 98512158 98512454 -3360715 - AluSx SINE Alu -16 296 1 1489 211 24 61 chr13 98512454 98512609 -3360560 - MLT1A1 LTR MaLR -205 160 1 816 296 72 13 chr13 98512609 98513116 -3360053 - L1MB3 LINE L1 -662 5508 4943 256 179 45 0 chr13 98513121 98513188 -3359981 + CT-rich Low_complexity Low_complexity 1 70 0 1807 207 14 0 chr13 98513339 98513696 -3359473 + MLT1A1 LTR MaLR 3 364 -1 3040 224 62 28 chr13 98513839 98514726 -3358443 - L1MC4 LINE L1 0 8042 7126 1654 211 10 53 chr13 98514726 98515124 -3358045 + MLT1B LTR MaLR 1 381 -9 509 274 128 0 chr13 98515202 98515406 -3357763 - L1MC4 LINE L1 -1039 7003 6774 1574 293 42 29 chr13 98515420 98516213 -3356956 - L1MB3 LINE L1 -1499 4647 3845 983 169 17 45 chr13 98516215 98516393 -3356776 - AluJo SINE Alu -18 294 122 2082 142 0 0 chr13 98516418 98516707 -3356462 - AluSq SINE Alu -24 289 1 841 163 0 0 chr13 98516731 98516854 -3356315 - AluJo SINE Alu -189 123 1 338 311 0 0 chr13 98516855 98516961 -3356208 - L1MB3 LINE L1 -2301 3845 3740 1998 150 19 33 chr13 98516968 98517329 -3355840 - MLT1A1 LTR MaLR 0 365 10 3450 114 12 2 chr13 98517457 98517965 -3355204 - MER75 DNA T2_type 0 514 2 450 272 43 64 chr13 98517981 98518327 -3354842 - L1MB3 LINE L1 -2722 3424 3086 2011 146 26 53 chr13 98518571 98518893 -3354276 - THE1C LTR MaLR -7 368 56 2179 122 0 3 chr13 98518893 98519188 -3353981 - AluSq SINE Alu -19 294 1 2011 146 26 53 chr13 98519188 98519243 -3353926 - THE1C LTR MaLR -319 56 1 10294 123 8 32 chr13 98519243 98520523 -3352646 - THE1B-int LTR MaLR 0 1580 364 2333 107 54 25 chr13 98520523 98520877 -3352292 - THE1B LTR MaLR 0 364 1 10294 123 8 32 chr13 98520877 98521231 -3351938 - THE1B-int LTR MaLR -1216 364 3 1690 149 99 42 chr13 98521233 98521588 -3351581 - THE1C LTR MaLR 0 375 1 494 148 44 82 chr13 98521763 98521898 -3351271 - L1MC1 LINE L1 -1 6332 6203 520 299 98 16 chr13 98522543 98522797 -3350372 + L1MC4a LINE L1 5575 5849 -1959 2714 196 42 23 chr13 98522804 98523025 -3350144 + L1MB7 LINE L1 5513 5728 -456 1881 144 82 25 chr13 98523025 98523380 -3349789 - THE1C LTR MaLR 0 375 1 2714 196 42 23 chr13 98523380 98523799 -3349370 + L1MB7 LINE L1 5728 6177 -7 1303 109 5 5 chr13 98524055 98524239 -3348930 - AluSg/x SINE Alu -46 266 83 281 235 34 59 chr13 98524391 98524433 -3348736 - MLT1J2 LTR MaLR -22 422 380 3676 94 14 6 chr13 98524433 98524942 -3348227 + MER75 DNA T2_type 2 514 0 281 235 34 59 chr13 98524942 98524986 -3348183 - MLT1J2 LTR MaLR -64 380 305 412 220 51 17 chr13 98525068 98525186 -3347983 - MLT1J2 LTR MaLR -255 195 74 1960 156 101 25 chr13 98527483 98527839 -3345330 + MSTA LTR MaLR 1 392 -36 2065 122 0 6 chr13 98527839 98528150 -3345019 - AluSc SINE Alu 0 309 1 1960 156 101 25 chr13 98528150 98528191 -3344978 + MSTA LTR MaLR 392 428 0 767 183 41 24 chr13 98528969 98529138 -3344031 + MER20 DNA MER1_type 2 173 -46 2033 130 0 7 chr13 98529167 98529460 -3343709 - AluSx SINE Alu -21 291 1 805 189 0 0 chr13 98529646 98529789 -3343380 + FRAM SINE Alu 1 137 -39 2041 120 10 3 chr13 98529852 98530161 -3343008 + AluSx SINE Alu 1 311 -1 2452 50 3 0 chr13 98530188 98530491 -3342678 + AluY SINE Alu 1 304 -7 4175 135 16 124 chr13 98530810 98531731 -3341438 - LTR12 LTR ERV1 0 826 5 2836 184 14 28 chr13 98531746 98532365 -3340804 - pTR5 LTR ERV1 -1093 1345 735 443 217 26 0 chr13 98534148 98534263 -3338906 - HsTC2 DNA Tc2 -120 1778 1661 354 262 52 62 chr13 98534543 98534753 -3338416 + L1ME4a LINE L1 5898 6105 -16 787 317 39 53 chr13 98534802 98535598 -3337571 + L1ME3 LINE L1 4575 5359 -787 681 311 107 31 chr13 98535601 98536080 -3337089 + L1ME3 LINE L1 5434 5948 -214 329 243 10 48 chr13 98537112 98537215 -3335954 - MIR SINE MIR -115 147 49 210 167 0 0 chr13 98537915 98537951 -3335218 + A-rich Low_complexity Low_complexity 1 36 0 1381 207 118 30 chr13 98538286 98538649 -3334520 - MLT2D LTR ERVL -19 395 1 350 185 31 0 chr13 98538706 98538771 -3334398 + L2 LINE L2 3196 3262 -51 224 0 65 0 chr13 98538776 98538807 -3334362 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 857 250 146 49 chr13 98538897 98539382 -3333787 + MLT1E LTR MaLR 8 587 -39 221 274 145 26 chr13 98539450 98539567 -3333602 + MIR3 SINE MIR 11 141 -67 432 297 30 55 chr13 98541197 98541399 -3331770 + MIR SINE MIR 22 218 -44 196 210 161 49 chr13 98542454 98542535 -3330634 + L2 LINE L2 3183 3272 0 24 53 0 0 chr13 98542542 98542580 -3330589 + AT_rich Low_complexity Low_complexity 1 38 0 244 205 51 13 chr13 98542688 98542766 -3330403 + (TA)n Simple_repeat Simple_repeat 2 82 0 1050 266 52 62 chr13 98542832 98543346 -3329823 - L1MC4a LINE L1 -1913 5895 5387 477 309 38 76 chr13 98543385 98543806 -3329363 - L1MC4a LINE L1 -824 5322 4918 22 56 0 0 chr13 98543991 98544027 -3329142 + AT_rich Low_complexity Low_complexity 1 36 0 236 197 56 0 chr13 98544315 98544386 -3328783 - L1P LINE L1 -1612 4534 4460 382 322 154 0 chr13 98546039 98546188 -3326981 - MIR SINE MIR -44 218 47 359 272 63 97 chr13 98546462 98546730 -3326439 - MER20B DNA MER1_type -522 261 3 1735 166 0 22 chr13 98546772 98547085 -3326084 + AluJb SINE Alu 1 306 -6 361 248 15 83 chr13 98547108 98547241 -3325928 + MIR SINE MIR 70 193 -69 233 239 0 0 chr13 98547640 98547686 -3325483 + MIR SINE MIR 104 149 -113 352 291 39 84 chr13 98548068 98548247 -3324922 + MIR SINE MIR 36 206 -56 2029 202 69 26 chr13 98548297 98548877 -3324292 - Charlie7 DNA MER1_type 0 2612 2008 1349 128 19 198 chr13 98548877 98549302 -3323867 + MER7A DNA MER2_type 1 336 0 1683 236 124 45 chr13 98549305 98550141 -3323028 - Charlie7 DNA MER1_type -605 2007 1106 327 25 0 0 chr13 98550142 98550182 -3322987 + (TA)n Simple_repeat Simple_repeat 2 41 0 2365 223 49 18 chr13 98550185 98550820 -3322349 + L1MC4a LINE L1 6251 6333 0 1892 303 105 7 chr13 98550821 98551780 -3321389 - Charlie7 DNA MER1_type -1505 1107 55 751 236 14 48 chr13 98551782 98551990 -3321179 - MER3 DNA MER1_type 0 209 9 2220 103 0 13 chr13 98552797 98553108 -3320061 + AluSg SINE Alu 1 307 -3 302 274 156 37 chr13 98553830 98553965 -3319204 - L1ME3 LINE L1 -23 6139 5989 512 261 23 51 chr13 98555137 98555313 -3317856 + MIR SINE MIR 17 187 -75 1093 258 27 0 chr13 98555865 98556163 -3317006 + L1ME LINE L1 5468 5773 -397 306 229 14 0 chr13 98556202 98556272 -3316897 - MIR SINE MIR -173 89 19 351 207 196 74 chr13 98556319 98556511 -3316658 + L1M4 LINE L1 1001 3193 -1206 25 0 0 0 chr13 98556743 98556768 -3316401 + AT_rich Low_complexity Low_complexity 1 25 0 1236 175 20 89 chr13 98557049 98557352 -3315817 + AluJo SINE Alu 1 282 -30 1164 81 0 0 chr13 98557357 98557518 -3315651 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 404 235 58 60 chr13 98557820 98558048 -3315121 + L1MCc LINE L1 25 596 -5826 420 284 70 56 chr13 98558507 98558792 -3314377 + L1MCc LINE L1 819 1107 -5316 6542 201 45 63 chr13 98558792 98560488 -3312681 - MER52A LTR ERV1 0 1755 1 1341 247 27 25 chr13 98560492 98560879 -3312290 + L1MCc LINE L1 1119 1509 -4914 1324 222 22 90 chr13 98560879 98561280 -3311889 + MLT1A2 LTR MaLR 1 374 0 1341 247 27 25 chr13 98561280 98561297 -3311872 + L1MCc LINE L1 1509 1524 -4899 429 286 127 24 chr13 98561292 98561505 -3311664 + L1MCc LINE L1 2498 2732 -4390 * 1410 265 81 23 chr13 98561503 98562209 -3310960 + L1MCc LINE L1 1527 2473 -4649 1513 239 34 48 chr13 98562209 98562398 -3310771 + MLT1E2 LTR MaLR 1 191 -435 1754 158 6 19 chr13 98562398 98562709 -3310460 + AluJb SINE Alu 1 307 -5 1513 239 34 48 chr13 98562709 98562959 -3310210 + MLT1E2 LTR MaLR 191 434 -192 908 269 62 32 chr13 98562974 98563346 -3309823 + L1MCc LINE L1 2708 3090 -4032 22 0 0 0 chr13 98563666 98563688 -3309481 + AT_rich Low_complexity Low_complexity 1 22 0 479 226 122 39 chr13 98563706 98563985 -3309184 - L1MC5 LINE L1 -209 7752 7451 1248 203 45 72 chr13 98564081 98564481 -3308688 + MLT1C LTR MaLR 27 415 -52 302 271 175 12 chr13 98564530 98564696 -3308473 - L1MC5 LINE L1 -1899 5909 5717 2253 73 0 3 chr13 98564736 98565037 -3308132 - AluY SINE Alu -8 303 4 516 194 103 46 chr13 98565058 98565233 -3307936 + L1MC5 LINE L1 7289 7473 -488 843 261 53 29 chr13 98565235 98565611 -3307558 + L1MC5 LINE L1 7516 7900 -61 335 250 68 62 chr13 98565641 98565833 -3307336 - L1MC5 LINE L1 -409 5712 5520 3277 181 46 25 chr13 98565901 98566068 -3307101 + MER67C LTR ERV1 1 163 -547 2382 161 57 0 chr13 98566068 98566471 -3306698 - MSTB LTR MaLR 0 426 1 3277 181 46 25 chr13 98566471 98566995 -3306174 + MER67C LTR ERV1 163 707 -3 1773 201 26 16 chr13 98567333 98567756 -3305413 - L1MB7 LINE L1 -7 6177 5751 490 90 146 11 chr13 98567756 98567845 -3305324 + MSTA LTR MaLR 5 105 -323 236 231 55 88 chr13 98567933 98568115 -3305054 - L1MC5 LINE L1 -85 7876 7701 348 114 11 125 chr13 98572052 98572098 -3301071 + MSTB LTR MaLR 349 382 -44 2233 97 0 6 chr13 98572098 98572409 -3300760 - AluSc SINE Alu 0 309 1 348 114 11 125 chr13 98572409 98572450 -3300719 + MSTB LTR MaLR 382 426 0 2325 156 73 2 chr13 98573000 98573398 -3299771 - MSTB LTR MaLR 0 426 1 487 279 126 14 chr13 98573563 98573785 -3299384 + MIR SINE MIR 13 259 -3 452 275 49 14 chr13 98573757 98573899 -3299270 - MIR SINE MIR -82 180 34 * 1055 225 99 53 chr13 98574281 98574356 -3298813 + MLT1C LTR MaLR 10 80 -387 2016 113 10 10 chr13 98574356 98574658 -3298511 + AluSx SINE Alu 1 302 -10 1055 225 99 53 chr13 98574658 98574995 -3298174 + MLT1C LTR MaLR 80 441 -26 1058 242 109 23 chr13 98576933 98577363 -3295806 + MLT1C LTR MaLR 1 467 0 293 108 40 14 chr13 98578271 98578345 -3294824 + (TG)n Simple_repeat Simple_repeat 1 76 0 447 285 42 6 chr13 98578818 98578983 -3294186 + MER5B DNA MER1_type 5 175 -3 423 294 171 0 chr13 98579003 98579149 -3294020 + MER5A DNA MER1_type 13 183 -6 225 235 191 0 chr13 98579365 98579433 -3293736 + Charlie2 DNA MER1_type 68 148 -2714 2436 240 25 59 chr13 98579586 98580439 -3292730 + L1M4 LINE L1 3567 4390 -1756 397 215 396 8 chr13 98580782 98581138 -3292031 - MLT1D LTR MaLR -5 462 5 2047 102 0 7 chr13 98581202 98581506 -3291663 - AluSx SINE Alu -10 302 1 903 237 74 18 chr13 98581799 98582082 -3291087 - L1ME1 LINE L1 -5 6161 5863 946 140 0 0 chr13 98582573 98582716 -3290453 + AluJb SINE Alu 157 299 -13 210 343 39 10 chr13 98583775 98583877 -3289292 + L3 LINE CR1 764 868 -709 1657 229 92 50 chr13 98584029 98584530 -3288639 - MLT1F1 LTR MaLR 0 567 46 2206 121 49 29 chr13 98584536 98584882 -3288287 + THE1B LTR MaLR 1 353 -11 274 297 136 19 chr13 98584903 98585058 -3288111 + L3 LINE CR1 1041 1213 -364 1944 257 34 48 chr13 98585074 98585920 -3287249 - L1ME3A LINE L1 -209 5961 5127 734 220 115 38 chr13 98585938 98586251 -3286918 - L1MC5 LINE L1 -219 7742 7406 967 163 0 0 chr13 98586856 98587009 -3286160 + AluJb SINE Alu 140 292 -20 1707 262 91 107 chr13 98587009 98587507 -3285662 - L1ME3A LINE L1 -1834 4312 3807 2256 178 19 5 chr13 98587507 98587929 -3285240 + MSTA LTR MaLR 1 428 0 1707 262 91 107 chr13 98587929 98588985 -3284184 - L1ME3A LINE L1 -2339 3807 2784 2513 179 75 65 chr13 98588985 98589174 -3283995 - L1M2 LINE L1 -700 5480 5294 189 0 0 0 chr13 98589174 98589195 -3283974 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2513 179 75 65 chr13 98589195 98589938 -3283231 - L1M2 LINE L1 -886 5294 4594 248 328 94 17 chr13 98590160 98590395 -3282774 - L1MC4 LINE L1 -107 7935 7683 2515 101 3 0 chr13 98590420 98590775 -3282394 + L1PA14 LINE L1 5805 6160 -1 251 286 2 0 chr13 98591059 98591139 -3282030 - L1MC4a LINE L1 -1199 6609 6545 2090 137 41 14 chr13 98591879 98592244 -3280925 - THE1C LTR MaLR 0 375 1 7427 166 136 11 chr13 98592244 98593710 -3279459 - THE1C-int LTR MaLR 0 1651 3 2195 128 32 32 chr13 98593712 98594087 -3279082 - THE1C LTR MaLR 0 375 1 674 219 30 41 chr13 98594111 98594280 -3278889 - MIR SINE MIR -63 199 33 463 217 17 83 chr13 98595827 98595908 -3277261 - MER81 DNA DNA -1 113 41 1928 136 7 7 chr13 98595908 98596217 -3276952 + AluSq SINE Alu 1 309 -4 463 217 17 83 chr13 98596217 98596255 -3276914 - MER81 DNA DNA -73 41 2 734 201 104 0 chr13 98596565 98596729 -3276440 - MER6B DNA MER2_type -29 181 1 350 232 81 0 chr13 98596743 98596842 -3276327 - L1MC3 LINE L1 -21 7764 7658 504 163 12 0 chr13 98598246 98598350 -3274819 - AluSg/x SINE Alu 0 303 199 1588 157 49 46 chr13 98598379 98598729 -3274440 + MER4A LTR ERV1 1 351 -313 573 276 31 26 chr13 98599794 98599986 -3273183 - MLT1E LTR MaLR -117 476 284 1315 123 0 0 chr13 98600617 98600804 -3272365 + AluJo SINE Alu 1 187 -125 228 180 49 33 chr13 98600817 98600878 -3272291 - MER4D LTR ERV1 -8 864 803 282 164 0 18 chr13 98600893 98600948 -3272221 - MER4C LTR ERV1 -109 356 303 278 206 73 96 chr13 98601341 98601560 -3271609 + L1MC5 LINE L1 7701 7914 -47 437 206 97 12 chr13 98601737 98601902 -3271267 + L1M4 LINE L1 4326 4504 -1642 596 189 79 0 chr13 98601902 98602029 -3271140 - Charlie1a DNA MER1_type -356 1099 963 711 254 39 78 chr13 98602161 98602468 -3270701 + MER51C LTR ERV1 346 640 0 2643 226 141 14 chr13 98602468 98602677 -3270492 - Charlie1a DNA MER1_type -1794 967 786 2100 94 0 23 chr13 98602677 98602976 -3270193 + AluSg SINE Alu 1 292 -18 2643 226 141 14 chr13 98602976 98603141 -3270028 - Charlie1a DNA MER1_type -1975 786 643 1503 175 7 10 chr13 98603141 98603433 -3269736 - AluJo SINE Alu -13 299 9 2643 226 141 14 chr13 98603433 98603915 -3269254 - Charlie1a DNA MER1_type -2118 643 1 24 0 0 0 chr13 98604156 98604180 -3268989 + GC_rich Low_complexity Low_complexity 1 24 0 228 67 0 0 chr13 98604422 98604452 -3268717 + (TCCCC)n Simple_repeat Simple_repeat 5 34 0 713 204 47 37 chr13 98604501 98604692 -3268477 + Charlie2a DNA MER1_type 1471 1663 -1199 297 173 96 48 chr13 98604861 98604965 -3268204 - L1MC4 LINE L1 0 8042 7934 5033 223 33 20 chr13 98604967 98606446 -3266723 - L1M4 LINE L1 -659 6017 4510 1831 220 48 20 chr13 98606507 98606961 -3266208 - MLT1C LTR MaLR 0 467 1 1634 177 62 70 chr13 98606964 98607366 -3265803 - MLT1C-int LTR MaLR -3 1368 970 * 1850 241 135 8 chr13 98607361 98607896 -3265273 - L1M4 LINE L1 -5939 603 1 1029 149 45 14 chr13 98607939 98608160 -3265009 - L1MB3 LINE L1 -4 6179 5952 1241 274 74 25 chr13 98608628 98608847 -3264322 - L1ME3A LINE L1 -8 6162 5955 2398 113 19 29 chr13 98608847 98609226 -3263943 + THE1C LTR MaLR 1 375 0 1241 274 74 25 chr13 98609226 98609452 -3263717 - L1ME3A LINE L1 -215 5955 5695 559 322 64 6 chr13 98609447 98609851 -3263318 + L1ME LINE L1 5234 5671 -499 * 215 262 136 87 chr13 98609997 98610100 -3263069 + MER5B DNA MER1_type 70 177 -1 600 331 132 36 chr13 98610212 98610789 -3262380 + HAL1 LINE L1 1036 1667 -840 353 328 179 0 chr13 98611840 98612035 -3261134 + L1 LINE L1 2374 2603 -3543 240 35 0 0 chr13 98612064 98612093 -3261076 + (TG)n Simple_repeat Simple_repeat 1 29 0 1561 132 35 16 chr13 98612229 98612487 -3260682 - AluJo SINE Alu -22 290 28 287 252 28 28 chr13 98612731 98612838 -3260331 + L1 LINE L1 4903 5009 -1137 2293 163 53 71 chr13 98612939 98613542 -3259627 + LTR5 LTR ERVK 378 969 0 3804 178 110 32 chr13 98613542 98614397 -3258772 + MER49 LTR ERV1 2 923 0 2572 248 84 37 chr13 98614397 98615536 -3257633 - L1MC4a LINE L1 -617 7191 5971 429 239 137 34 chr13 98615544 98615749 -3257420 - Charlie2 DNA MER1_type -2500 282 57 24 0 0 0 chr13 98616042 98616066 -3257103 + AT_rich Low_complexity Low_complexity 1 24 0 2086 88 26 16 chr13 98618899 98619205 -3253964 + AluSc SINE Alu 1 309 0 266 256 103 13 chr13 98619546 98619624 -3253545 + L2 LINE L2 3159 3243 -29 306 306 82 34 chr13 98624237 98624384 -3248785 - L3 LINE CR1 -628 949 796 944 93 0 23 chr13 98624477 98624606 -3248563 - FLAM_C SINE Alu -5 138 13 1977 122 52 0 chr13 98624766 98625052 -3248117 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr13 98625288 98625310 -3247859 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr13 98627019 98627043 -3246126 + (A)n Simple_repeat Simple_repeat 1 24 0 2086 119 0 17 chr13 98627916 98628218 -3244951 + AluSx SINE Alu 2 298 -14 1140 217 77 4 chr13 98629232 98629504 -3243665 - MER58B DNA MER1_type -16 325 34 425 183 239 28 chr13 98629561 98629741 -3243428 - L1MA5 LINE L1 -36 6264 6047 1248 165 50 57 chr13 98629750 98630029 -3243140 - AluJo SINE Alu -24 288 12 2754 147 59 4 chr13 98630029 98630541 -3242628 - L1MA5 LINE L1 -337 5963 5424 1068 169 5 43 chr13 98631184 98631354 -3241815 - AluJb SINE Alu -12 300 138 2473 86 0 3 chr13 98631354 98631668 -3241501 - AluSq SINE Alu 0 313 1 1068 169 5 43 chr13 98631668 98631704 -3241465 - AluJb SINE Alu -174 138 102 711 189 0 0 chr13 98632541 98632663 -3240506 + FLAM_C SINE Alu 1 122 -21 22 0 0 0 chr13 98632971 98632993 -3240176 + AT_rich Low_complexity Low_complexity 1 22 0 351 60 0 20 chr13 98683102 98683152 -3190017 - HSMAR2 DNA Mariner -1252 50 2 527 255 0 0 chr13 98683563 98683665 -3189504 + Tigger3b DNA MER2_type 1 102 -1129 * 5363 110 86 2 chr13 98683663 98684527 -3188642 + Tigger3b DNA MER2_type 274 1209 -22 240 341 123 18 chr13 98685184 98685468 -3187701 + L2 LINE L2 1836 2149 -1165 633 257 121 44 chr13 98685477 98685897 -3187272 + MLT1H LTR MaLR 14 492 -57 1673 247 69 55 chr13 98686338 98686920 -3186249 - MLT1G1 LTR MaLR 0 595 6 886 131 150 0 chr13 98687805 98687958 -3185211 - AluJb SINE Alu -11 301 126 717 118 0 0 chr13 98687958 98688060 -3185109 + AluJo/FLAM SINE Alu 28 129 -183 272 137 59 0 chr13 98688060 98688111 -3185058 - AluJb SINE Alu -158 144 91 239 139 47 0 chr13 98688211 98688254 -3184915 - Alu SINE Alu -257 45 1 451 270 69 26 chr13 98688263 98688452 -3184717 - L1MC/D LINE L1 -2036 5772 5576 187 241 139 51 chr13 98688477 98688556 -3184613 - L2 LINE L2 -14 3299 3214 2194 100 17 0 chr13 98688719 98689019 -3184150 + AluSx SINE Alu 1 305 -7 228 195 0 35 chr13 98689116 98689203 -3183966 - HAL1b LINE L1 -1 1347 1264 * 1107 174 5 24 chr13 98689200 98689412 -3183757 + L1M3 LINE L1 5579 5786 -397 358 229 0 73 chr13 98689427 98689523 -3183646 - L1MC4 LINE L1 -1340 6702 6614 323 206 44 15 chr13 98689522 98689590 -3183579 - L1MCa LINE L1 -4362 2064 1995 * 315 264 43 68 chr13 98689576 98689685 -3183484 + L1MCa LINE L1 1980 2085 -4341 * 2130 126 14 80 chr13 98689685 98690017 -3183152 + L1MB3 LINE L1 5776 6074 -109 1895 132 173 16 chr13 98690017 98690387 -3182782 + MSTA LTR MaLR 1 428 0 2130 126 14 80 chr13 98690387 98690491 -3182678 + L1MB3 LINE L1 6074 6183 0 315 264 43 68 chr13 98690491 98690544 -3182625 + L1MCa LINE L1 2085 2138 -4288 893 280 119 39 chr13 98690736 98691297 -3181872 - HAL1b LINE L1 -421 927 322 1351 274 47 5 chr13 98691309 98691711 -3181458 + L1ME1 LINE L1 5400 5818 -346 7888 18 3 0 chr13 98692047 98693539 -3179630 - L1PA2 LINE L1 0 6155 4662 812 269 80 32 chr13 98694485 98694823 -3178346 + L1ME1 LINE L1 5808 6161 -5 461 236 125 32 chr13 98694844 98695060 -3178109 - HAL1b LINE L1 -1017 331 96 4058 155 93 44 chr13 98695521 98696407 -3176762 + L1MA4A LINE L1 5371 6299 -4 2574 93 25 5 chr13 98696993 98697360 -3175809 - L1PA13 LINE L1 0 6163 5790 252 314 113 16 chr13 98697374 98697568 -3175601 + L1MC4 LINE L1 7690 7902 -140 2269 200 76 79 chr13 98697823 98698575 -3174594 + L1M2 LINE L1 4601 5323 -934 189 0 0 0 chr13 98698575 98698596 -3174573 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2269 200 76 79 chr13 98698596 98698788 -3174381 + L1M2 LINE L1 5323 5514 -743 1139 270 93 25 chr13 98698788 98699661 -3173508 + L1ME1 LINE L1 2784 3842 -2304 2378 168 16 5 chr13 98699661 98700084 -3173085 - MSTA LTR MaLR 0 428 1 1139 270 93 25 chr13 98700084 98700589 -3172580 + L1ME1 LINE L1 3842 4312 -1834 1035 153 0 0 chr13 98700589 98700746 -3172423 - AluJb SINE Alu -21 291 135 378 317 104 11 chr13 98700831 98701014 -3172155 + L1ME1 LINE L1 4419 4618 -1528 1380 254 20 17 chr13 98701464 98701811 -3171358 - MER4D LTR ERV1 -7 896 549 306 261 87 8 chr13 98701819 98701979 -3171190 - LTR39 LTR ERV1 -401 382 1 2144 117 3 0 chr13 98702282 98702590 -3170579 + AluSc SINE Alu 1 309 0 381 131 0 0 chr13 98702597 98702658 -3170511 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 604 253 83 42 chr13 98706380 98706621 -3166548 + MLT1C LTR MaLR 55 305 -162 563 149 35 11 chr13 98706762 98706936 -3166233 + GA-rich Low_complexity Low_complexity 2 179 0 326 150 58 0 chr13 98707071 98707191 -3165978 + GA-rich Low_complexity Low_complexity 2 128 0 32 35 0 18 chr13 98708070 98708094 -3165075 + AT_rich Low_complexity Low_complexity 1 24 -32 927 192 0 0 chr13 98708094 98708245 -3164924 + FRAM SINE Alu 2 152 -14 32 35 0 18 chr13 98708245 98708277 -3164892 + AT_rich Low_complexity Low_complexity 24 56 0 426 263 169 58 chr13 98708475 98709061 -3164108 + L1ME1 LINE L1 5265 5915 -206 706 212 101 0 chr13 98709633 98709831 -3163338 - MER20 DNA MER1_type -1 218 1 1460 147 0 23 chr13 98710149 98710407 -3162762 - AluSx SINE Alu 0 312 61 463 335 23 0 chr13 98710962 98711138 -3162031 - Charlie8 DNA MER1_type -2220 197 18 385 221 12 12 chr13 98712103 98712189 -3160980 - MLT1C LTR MaLR -381 86 1 245 324 49 29 chr13 98713127 98713229 -3159940 - L2 LINE L2 0 3272 3169 1104 321 60 2 chr13 98713296 98713748 -3159421 - L1MEc LINE L1 -3455 2760 2283 355 339 73 31 chr13 98714104 98714296 -3158873 - L1MEc LINE L1 -4263 2133 1934 1183 118 0 0 chr13 98714442 98714611 -3158558 - AluJb SINE Alu -143 169 1 360 181 64 32 chr13 98714617 98714711 -3158458 + MLT1L LTR MaLR 517 613 -2 2200 100 0 3 chr13 98715070 98715369 -3157800 + AluSx SINE Alu 1 298 -14 243 288 48 32 chr13 98716877 98717002 -3156167 + L1ME1 LINE L1 6036 6162 -4 237 262 94 54 chr13 98717537 98717602 -3155567 + MIR SINE MIR 92 153 -109 183 100 0 0 chr13 98717602 98717632 -3155537 + (CAA)n Simple_repeat Simple_repeat 3 32 0 237 262 94 54 chr13 98717632 98717715 -3155454 + MIR SINE MIR 153 246 -16 584 173 11 38 chr13 98717796 98717981 -3155188 + (CA)n Simple_repeat Simple_repeat 1 180 0 611 174 17 22 chr13 98718043 98718221 -3154948 + (CA)n Simple_repeat Simple_repeat 2 178 0 225 215 25 13 chr13 98718233 98718312 -3154857 + (CA)n Simple_repeat Simple_repeat 2 81 0 2528 268 81 45 chr13 98719020 98720201 -3152968 + ERVL LTR ERVL 949 2208 -3556 206 250 145 0 chr13 98721026 98721102 -3152067 - MIR3 SINE MIR -39 169 83 199 366 14 0 chr13 98721286 98721357 -3151812 + L2 LINE L2 3236 3307 -6 2039 79 0 8 chr13 98721597 98721863 -3151306 + AluSp SINE Alu 32 295 -18 2182 105 3 0 chr13 98722907 98723213 -3149956 - AluSx SINE Alu -5 307 1 221 196 18 0 chr13 98723848 98723904 -3149265 + (TG)n Simple_repeat Simple_repeat 1 57 0 180 315 0 0 chr13 98724866 98725012 -3148157 + (CA)n Simple_repeat Simple_repeat 1 146 0 227 276 0 9 chr13 98725038 98725154 -3148015 + (CA)n Simple_repeat Simple_repeat 1 115 0 227 314 128 0 chr13 98725660 98725762 -3147407 + MER34 LTR ERV1 40 154 -388 706 266 194 12 chr13 98726324 98726644 -3146525 + MER39 LTR ERV1 330 707 0 15404 162 23 3 chr13 98726855 98729939 -3143230 - L1PB1 LINE L1 -43 6824 3621 5999 74 30 4 chr13 98729939 98730699 -3142470 + LTR17 LTR ERV1 1 780 0 15404 162 23 3 chr13 98730699 98731928 -3141241 - L1PB1 LINE L1 -3246 3621 2418 2404 93 91 11 chr13 98731927 98732726 -3140443 - L1PB1 LINE L1 -5218 1645 634 * 1277 131 10 0 chr13 98732726 98732924 -3140245 - L1PB1 LINE L1 -6663 200 1 1691 150 181 27 chr13 98733120 98733544 -3139625 - LTR10A LTR ERV1 -61 548 13 225 226 71 12 chr13 98733831 98733915 -3139254 + L1MB2 LINE L1 5702 5790 -374 1562 189 17 3 chr13 98733950 98734241 -3138928 + AluJo SINE Alu 1 295 -17 1040 193 75 19 chr13 98734388 98734600 -3138569 + MER58A DNA MER1_type 1 224 0 2247 151 41 25 chr13 98736695 98737138 -3136031 + LTR7 LTR ERV1 1 450 0 454 259 144 35 chr13 98737502 98737676 -3135493 - MIR SINE MIR -50 212 20 3851 114 0 40 chr13 98737812 98738415 -3134754 + MER4B LTR ERV1 1 579 -31 259 178 0 0 chr13 98739214 98739259 -3133910 + L1MB2 LINE L1 5880 5924 -247 3939 163 29 1 chr13 98739259 98739951 -3133218 + MER50 LTR ERV1 1 711 -23 851 159 145 19 chr13 98739958 98740172 -3132997 + L1MB2 LINE L1 5930 6170 -1 2462 48 3 16 chr13 98740661 98740976 -3132193 + AluY SINE Alu 1 311 0 1720 282 52 32 chr13 98741899 98742573 -3130596 - L1ME3A LINE L1 -5 6165 5483 2994 168 16 47 chr13 98743700 98744337 -3128832 - L1MB3 LINE L1 -4 6179 5563 268 289 18 77 chr13 98744602 98744875 -3128294 + L1M4 LINE L1 1323 1579 -4963 5013 47 14 3 chr13 98744875 98745896 -3127273 - MER11A LTR ERVK 0 1266 1 290 247 141 50 chr13 98745896 98746236 -3126933 + L1M4 LINE L1 1523 1893 -4751 * 403 224 36 48 chr13 98746224 98746389 -3126780 + L1MEc LINE L1 29 191 -6205 2089 114 3 7 chr13 98746470 98746767 -3126402 + AluSg SINE Alu 7 302 -8 346 276 119 16 chr13 98746777 98746962 -3126207 + L1MEc LINE L1 2800 3003 -3212 293 239 65 51 chr13 98746989 98747127 -3126042 - L1ME3A LINE L1 -214 5956 5817 16307 165 33 21 chr13 98747508 98748664 -3124505 - L1M2 LINE L1 -3752 3096 1955 1490 213 0 6 chr13 98748664 98748978 -3124191 - AluJo SINE Alu 0 312 1 16307 165 33 21 chr13 98748978 98750859 -3122310 - L1M2 LINE L1 -4893 1955 8 2037 134 0 7 chr13 98750917 98751223 -3121946 - AluSx SINE Alu -8 304 1 1296 160 15 53 chr13 98752010 98752272 -3120897 - AluJo SINE Alu -27 285 34 275 259 81 43 chr13 98752500 98752685 -3120484 - L1ME3 LINE L1 -211 5951 5760 896 278 33 16 chr13 98752691 98753076 -3120093 - L1MC4 LINE L1 0 8042 7565 575 253 117 84 chr13 98753423 98753630 -3119539 - L1ME3 LINE L1 -1479 4667 4468 2180 111 0 0 chr13 98753630 98753928 -3119241 - AluSx SINE Alu -13 299 2 575 253 117 84 chr13 98753928 98754364 -3118805 - L1ME3 LINE L1 -1678 4468 4003 911 269 83 38 chr13 98754366 98754707 -3118462 + MLT1A1 LTR MaLR 3 418 -8 522 252 35 71 chr13 98755100 98755326 -3117843 - ERVL LTR ERVL -651 5113 4896 1305 107 6 0 chr13 98755326 98755503 -3117666 - AluSp SINE Alu -135 178 1 880 289 62 35 chr13 98755508 98756155 -3117014 - ERVL LTR ERVL -1357 4407 3712 855 298 82 19 chr13 98756197 98756563 -3116606 - ERVL LTR ERVL -2637 3017 2629 670 112 0 0 chr13 98756647 98756736 -3116433 + AluJ/FLAM SINE Alu 2 90 -222 3890 141 101 40 chr13 98756747 98758146 -3115023 - pTR5 LTR ERV1 0 2606 1524 1163 154 0 0 chr13 98758172 98758360 -3114809 + AluJb SINE Alu 120 307 -5 835 272 54 8 chr13 98758360 98758621 -3114548 - ERVL LTR ERVL -3186 2578 2306 1793 217 77 78 chr13 98758634 98759098 -3114071 - L1ME1 LINE L1 -8 6158 5694 1579 183 0 16 chr13 98759098 98759404 -3113765 + AluJo SINE Alu 6 306 -6 1793 217 77 78 chr13 98759404 98759640 -3113529 - L1ME1 LINE L1 -472 5694 5459 237 235 0 0 chr13 98759695 98759746 -3113423 - L1MB7 LINE L1 -12 6172 6122 2107 133 8 46 chr13 98759809 98759909 -3113260 - L1PA16 LINE L1 -9 6157 6055 2072 139 45 14 chr13 98759909 98760262 -3112907 + THE1B LTR MaLR 1 364 0 2107 133 8 46 chr13 98760262 98760358 -3112811 - L1PA16 LINE L1 -111 6055 5957 2205 109 0 0 chr13 98760358 98760661 -3112508 - AluSg SINE Alu -7 303 1 2107 133 8 46 chr13 98760661 98760831 -3112338 - L1PA16 LINE L1 -209 5957 5804 1655 206 23 27 chr13 98760831 98761301 -3111868 - L1ME1 LINE L1 -730 5436 4966 327 238 0 86 chr13 98761301 98761406 -3111763 - L1 LINE L1 -1631 4515 4420 470 257 6 23 chr13 98761411 98761586 -3111583 - L1 LINE L1 -1707 4439 4268 1649 141 28 18 chr13 98761593 98761877 -3111292 + MER65A LTR ERV1 1 287 -158 856 206 19 0 chr13 98761878 98762038 -3111131 + AluJb SINE Alu 136 298 -14 857 100 7 40 chr13 98762040 98762190 -3110979 + MER65A LTR ERV1 283 427 -18 529 155 29 0 chr13 98762249 98762352 -3110817 - L1 LINE L1 -1926 4220 4115 24 0 0 0 chr13 98762352 98762376 -3110793 + AT_rich Low_complexity Low_complexity 1 24 0 2260 54 4 0 chr13 98762563 98762843 -3110326 + L1PA4 LINE L1 5875 6155 0 333 291 63 16 chr13 98762856 98762983 -3110186 + L1ME4a LINE L1 5914 6046 -75 1959 234 58 47 chr13 98763009 98763696 -3109473 - L1 LINE L1 -2065 4081 3387 328 211 14 0 chr13 98763725 98763796 -3109373 + Charlie2 DNA MER1_type 2087 2158 -704 1531 223 150 12 chr13 98764172 98764751 -3108418 + Charlie2 DNA MER1_type 2158 2816 -46 591 226 26 0 chr13 98764772 98764887 -3108282 + FLAM_A SINE Alu 1 118 -15 333 0 0 0 chr13 98764890 98764927 -3108242 + (CA)n Simple_repeat Simple_repeat 1 37 0 646 193 99 12 chr13 98765869 98766040 -3107129 + MLT1A2 LTR MaLR 17 202 -188 653 186 99 12 chr13 98766108 98766269 -3106900 + MLT1A2 LTR MaLR 171 345 -29 365 295 28 88 chr13 98772251 98772820 -3100349 + HAL1 LINE L1 1141 1675 -832 204 291 12 0 chr13 98773434 98773520 -3099649 + A-rich Low_complexity Low_complexity 3 89 0 549 318 25 44 chr13 98773891 98774253 -3098916 + L1PA15 LINE L1 1 355 -7226 3716 163 14 43 chr13 98774935 98775375 -3097794 + L1PA15 LINE L1 2319 2770 -4804 2242 119 0 0 chr13 98775375 98775670 -3097499 + AluSx SINE Alu 1 295 -17 3716 163 14 43 chr13 98775670 98775681 -3097488 + L1PA15 LINE L1 2770 2780 -4794 2020 157 0 0 chr13 98775681 98775974 -3097195 + AluJb SINE Alu 1 293 -19 3716 163 14 43 chr13 98775974 98776290 -3096879 + L1PA15 LINE L1 2780 3065 -4509 934 158 38 0 chr13 98776315 98776473 -3096696 - MSTA LTR MaLR 0 428 265 706 132 0 9 chr13 98776481 98776587 -3096582 - MSTA LTR MaLR -321 105 1 16997 190 13 13 chr13 98776589 98779311 -3093858 + L1PA15 LINE L1 3099 5818 -1785 1959 168 10 0 chr13 98779311 98779620 -3093549 + AluJo SINE Alu 1 312 0 16997 190 13 13 chr13 98779620 98781401 -3091768 + L1PA15 LINE L1 5818 7598 -5 447 164 14 0 chr13 98781474 98781547 -3091622 + FLAM_A SINE Alu 33 106 -36 231 36 0 0 chr13 98781554 98781582 -3091587 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 984 200 31 25 chr13 98781645 98781970 -3091199 + L1MD3 LINE L1 6049 7995 0 4372 146 5 44 chr13 98782169 98782320 -3090849 + L1MA4 LINE L1 5517 5672 -628 2043 141 6 6 chr13 98782320 98782632 -3090537 + AluSx SINE Alu 1 312 0 4372 146 5 44 chr13 98782632 98782744 -3090425 + L1MA4 LINE L1 5672 5787 -513 1790 169 0 7 chr13 98782744 98783022 -3090147 + AluJo SINE Alu 5 280 -32 207 0 0 0 chr13 98783022 98783045 -3090124 + (CAAAA)n Simple_repeat Simple_repeat 5 27 0 4372 146 5 44 chr13 98783045 98783590 -3089579 + L1MA4 LINE L1 5785 6295 -5 274 321 0 0 chr13 98783602 98783714 -3089455 + L1M4 LINE L1 2892 3003 -3143 1867 247 36 14 chr13 98783755 98784261 -3088908 - LTR40a LTR ERVL 0 519 3 702 260 73 53 chr13 98784305 98784605 -3088564 + L1MC5 LINE L1 6923 7228 -733 1611 243 28 16 chr13 98784800 98785236 -3087933 + MLT1C LTR MaLR 7 447 -20 450 251 31 62 chr13 98785237 98785432 -3087737 + LTR16C LTR ERVL 286 474 -17 297 73 24 0 chr13 98785548 98785589 -3087580 - MLT2C1 LTR ERVL 0 397 356 889 248 156 23 chr13 98785641 98785948 -3087221 - MLT2C1 LTR ERVL -49 348 1 419 236 39 7 chr13 98786267 98786404 -3086765 + LTR16C LTR ERVL 322 489 -2 216 0 0 0 chr13 98788346 98788370 -3084799 + (CCCGG)n Simple_repeat Simple_repeat 3 26 0 26 50 0 0 chr13 98788724 98788764 -3084405 + GC_rich Low_complexity Low_complexity 1 40 0 316 263 11 0 chr13 98788779 98788874 -3084295 + C-rich Low_complexity Low_complexity 3 98 0 40 21 0 0 chr13 98788902 98788949 -3084220 + GC_rich Low_complexity Low_complexity 1 47 0 30 27 0 0 chr13 98788983 98789020 -3084149 + GC_rich Low_complexity Low_complexity 1 37 0 195 69 0 0 chr13 98789143 98789172 -3083997 + (CGG)n Simple_repeat Simple_repeat 2 30 0 38 39 0 0 chr13 98789406 98789458 -3083711 + GC_rich Low_complexity Low_complexity 1 52 0 203 248 9 48 chr13 98789520 98789625 -3083544 + G-rich Low_complexity Low_complexity 3 103 0 205 95 0 71 chr13 98789581 98789623 -3083546 + (AGGGGG)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr13 98789793 98789822 -3083347 + GC_rich Low_complexity Low_complexity 1 29 0 185 0 40 0 chr13 98790440 98790465 -3082704 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 332 152 15 0 chr13 98791539 98791605 -3081564 + CT-rich Low_complexity Low_complexity 2 68 0 768 173 0 0 chr13 98791605 98791738 -3081431 - FLAM_C SINE Alu 0 133 1 1193 224 45 9 chr13 98792865 98793231 -3079938 - MLT1C LTR MaLR -68 399 1 387 294 0 0 chr13 98794224 98794404 -3078765 + (CA)n Simple_repeat Simple_repeat 1 180 0 203 319 78 9 chr13 98795627 98795743 -3077426 + MIR SINE MIR 31 154 -108 345 213 13 0 chr13 98796824 98796890 -3076279 - LTR33 LTR ERVL -413 108 42 1153 220 84 18 chr13 98796890 98797222 -3075947 + MLT1H LTR MaLR 1 354 -195 232 238 0 0 chr13 98797480 98797543 -3075626 - HAL1 LINE L1 -1215 1292 1230 558 244 12 19 chr13 98797558 98797718 -3075451 - MIR SINE MIR -10 252 94 27 0 0 0 chr13 98797736 98797763 -3075406 + GC_rich Low_complexity Low_complexity 1 27 0 304 258 118 90 chr13 98797813 98798235 -3074934 - HAL1 LINE L1 -1335 1172 739 2190 122 0 0 chr13 98798630 98798926 -3074243 - AluSx SINE Alu -16 296 1 2298 102 3 0 chr13 98800075 98800370 -3072799 + AluSx SINE Alu 1 296 -16 6937 218 56 76 chr13 98800726 98801242 -3071927 + L1ME1 LINE L1 3061 3586 -2580 1826 140 63 23 chr13 98801242 98801542 -3071627 + AluJb SINE Alu 1 312 0 6937 218 56 76 chr13 98801542 98802206 -3070963 + L1ME1 LINE L1 3586 4262 -1904 1129 126 0 0 chr13 98802206 98802393 -3070776 + AluSg/x SINE Alu 129 315 0 6937 218 56 76 chr13 98802393 98804225 -3068944 + L1ME1 LINE L1 4262 6159 -7 230 294 56 35 chr13 98806043 98806186 -3066983 - Tigger8 DNA MER2_type -171 495 350 212 253 0 23 chr13 98806771 98806858 -3066311 + (CATA)n Simple_repeat Simple_repeat 2 86 0 226 333 0 0 chr13 98806869 98806959 -3066210 + L1MC4 LINE L1 6614 6703 -1339 285 232 0 0 chr13 98807019 98807088 -3066081 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 514 297 0 28 chr13 98807113 98807295 -3065874 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 400 264 41 0 chr13 98807507 98807628 -3065541 - MER5A DNA MER1_type -3 186 61 453 19 0 0 chr13 98807629 98807683 -3065486 + (TA)n Simple_repeat Simple_repeat 1 54 0 14321 31 3 3 chr13 98807686 98810128 -3063041 - L1PA5 LINE L1 -11 6143 3692 8167 39 1 0 chr13 98810128 98811120 -3062049 + L1P LINE L1 2651 3643 -2503 409 162 14 0 chr13 98811120 98811194 -3061975 - MER5A DNA MER1_type -114 75 1 23 54 0 0 chr13 98811545 98811582 -3061587 + AT_rich Low_complexity Low_complexity 1 37 0 2309 103 3 0 chr13 98811903 98812203 -3060966 + AluSp SINE Alu 1 301 -12 1205 131 0 0 chr13 98812203 98812371 -3060798 + AluSg/x SINE Alu 134 301 -11 1075 186 60 18 chr13 98812816 98813101 -3060068 + L1MDb LINE L1 1033 1329 -5080 386 256 8 0 chr13 98813193 98813314 -3059855 + (TCTCTG)n Simple_repeat Simple_repeat 5 126 0 699 248 102 40 chr13 98814018 98814543 -3058626 - L2 LINE L2 -1 3312 2768 1522 168 52 45 chr13 98814551 98814861 -3058308 - AluJo SINE Alu 0 312 1 2020 174 37 3 chr13 98814861 98815241 -3057928 - L1MC2 LINE L1 -15 6329 5937 824 184 92 0 chr13 98815245 98815397 -3057772 - MER21B LTR ERV1 -369 494 329 3936 145 35 16 chr13 98815401 98816150 -3057019 - L1MC2 LINE L1 -395 5949 5189 272 185 46 0 chr13 98816151 98816216 -3056953 - L2 LINE L2 -528 2786 2719 391 266 116 60 chr13 98818926 98819159 -3054010 - L1MC4a LINE L1 -1850 5958 5713 423 201 196 52 chr13 98819198 98819427 -3053742 - LTR33 LTR ERVL -7 514 253 458 238 66 0 chr13 98819431 98819553 -3053616 + MER63 DNA MER1_type 2 757 -79 464 152 0 13 chr13 98819615 98819694 -3053475 - LTR33 LTR ERVL -364 157 80 266 353 10 0 chr13 98819720 98819822 -3053347 + MIR3 SINE MIR 81 183 -25 461 180 331 0 chr13 98820173 98820312 -3052857 + MER5A DNA MER1_type 5 189 0 204 220 20 0 chr13 98820325 98820375 -3052794 - MER5B DNA MER1_type 0 178 128 1763 186 51 16 chr13 98821044 98821416 -3051753 - L1MC4a LINE L1 -437 5727 5343 2894 10 0 0 chr13 98821604 98821910 -3051259 - AluYa5 SINE Alu -5 306 1 207 271 96 46 chr13 98822121 98822261 -3050908 - MIR SINE MIR -61 201 57 934 259 24 57 chr13 98822321 98822653 -3050516 + Charlie2 DNA MER1_type 1 321 -2461 1467 201 70 68 chr13 98822655 98823043 -3050126 + Charlie2 DNA MER1_type 1855 2246 -616 949 106 0 8 chr13 98823043 98823175 -3049994 + FLAM_C SINE Alu 3 133 0 1467 201 70 68 chr13 98823175 98823329 -3049840 + Charlie2 DNA MER1_type 2246 2398 -464 907 238 5 0 chr13 98823349 98823551 -3049618 + MER82 DNA MER2_type 2 204 -449 571 311 67 63 chr13 98824368 98825297 -3047872 - Tigger2 DNA MER2_type -770 1948 1017 2461 195 16 7 chr13 98825538 98825989 -3047180 + MER82 DNA MER2_type 199 653 0 791 199 183 13 chr13 98826023 98826324 -3046845 + Charlie2 DNA MER1_type 2483 2834 -28 25 0 0 0 chr13 98827523 98827548 -3045621 + GC_rich Low_complexity Low_complexity 1 25 0 226 280 0 0 chr13 98828759 98828809 -3044360 + MIR SINE MIR 100 149 -59 897 215 211 0 chr13 98828836 98829120 -3044049 - MER2 DNA MER2_type 0 344 1 2113 84 13 29 chr13 98829707 98830016 -3043153 + AluSx SINE Alu 1 304 -8 390 195 0 37 chr13 98830133 98830215 -3042954 + L2 LINE L2 3234 3312 -1 21 0 0 0 chr13 98831115 98831136 -3042033 + AT_rich Low_complexity Low_complexity 1 21 0 895 115 0 0 chr13 98831311 98831433 -3041736 + AluSq/x SINE Alu 1 122 -191 427 108 0 0 chr13 98831433 98831498 -3041671 + Alu SINE Alu 234 298 -12 4231 144 54 10 chr13 98831734 98832944 -3040225 - L1M2 LINE L1 -498 5793 4542 519 171 23 0 chr13 98832962 98833050 -3040119 + THE1C LTR MaLR 1 90 -285 283 135 19 39 chr13 98833055 98833107 -3040062 - THE1C LTR MaLR -313 62 12 * 343 248 0 13 chr13 98833081 98833168 -3040001 + AluJb SINE Alu 74 150 -152 * 1626 145 48 24 chr13 98833166 98833455 -3039714 + THE1C LTR MaLR 77 372 -3 853 176 94 6 chr13 98833464 98833634 -3039535 + MER46A DNA MER2_type 24 208 -28 370 323 47 0 chr13 98833918 98834045 -3039124 + MIR SINE MIR 130 262 0 543 290 144 35 chr13 98834129 98834636 -3038533 - L1ME4a LINE L1 -49 6072 5511 1169 203 63 20 chr13 98835935 98836023 -3037146 - MER33 DNA MER1_type -2261 324 241 1514 164 113 18 chr13 98836023 98836322 -3036847 - AluJo SINE Alu 0 302 1 1169 203 63 20 chr13 98836322 98836534 -3036635 - MER33 DNA MER1_type -2344 241 11 304 324 120 28 chr13 98836596 98836812 -3036357 - MIR SINE MIR -7 255 20 605 237 122 0 chr13 98836935 98837091 -3036078 + MER45A DNA AcHobo 1 175 -3 218 237 34 0 chr13 98837640 98837699 -3035470 + L3 LINE CR1 1513 1573 -4 204 345 126 11 chr13 98838493 98838667 -3034502 + L2 LINE L2 2481 2674 -640 1367 264 138 12 chr13 98838755 98839326 -3033843 - L2 LINE L2 -452 2862 2220 190 304 0 0 chr13 98841593 98841649 -3031520 - MIR SINE MIR -32 230 175 2362 114 87 8 chr13 98841722 98842089 -3031080 - MSTA LTR MaLR 0 428 33 504 330 84 15 chr13 98842240 98842501 -3030668 - L2 LINE L2 -12 3301 3023 249 186 0 0 chr13 98842505 98842548 -3030621 - L2 LINE L2 -248 3065 3023 1886 151 0 3 chr13 98842592 98842884 -3030285 - AluSx SINE Alu -20 292 2 1732 156 85 12 chr13 98844217 98844557 -3028612 + MLT1A1 LTR MaLR 1 365 0 456 250 81 38 chr13 98845197 98845357 -3027812 - MER58B DNA MER1_type 0 341 175 297 152 0 0 chr13 98845400 98845446 -3027723 + Tigger4(Zombi) DNA MER2_type 1 46 -2685 * 458 115 0 0 chr13 98845422 98845483 -3027686 + Tigger4(Zombi) DNA MER2_type 2671 2731 0 203 222 48 0 chr13 98847948 98848011 -3025158 - L2 LINE L2 -296 2976 2911 336 243 88 29 chr13 98848117 98848238 -3024931 - MIR SINE MIR -43 219 88 2269 123 21 16 chr13 98848238 98848611 -3024558 - THE1C LTR MaLR 0 375 1 336 243 88 29 chr13 98848611 98848625 -3024544 - MIR SINE MIR -174 88 76 270 221 176 46 chr13 98848669 98848800 -3024369 - L2 LINE L2 -515 2799 2652 2154 93 3 3 chr13 98849244 98849544 -3023625 - AluSx SINE Alu -12 300 1 312 315 114 7 chr13 98849569 98849718 -3023451 - MIR SINE MIR -22 240 76 186 316 18 0 chr13 98851051 98851108 -3022061 - MER5B DNA MER1_type -45 133 76 1972 131 0 16 chr13 98851566 98851871 -3021298 - AluSx SINE Alu -12 300 1 1231 275 118 48 chr13 98851915 98852576 -3020593 - L1MC4 LINE L1 -168 7874 7168 354 261 0 11 chr13 98853078 98853170 -3019999 - MIR SINE MIR -125 137 47 259 194 48 0 chr13 98853637 98853699 -3019470 - MER112 DNA MER1_type -187 73 9 1832 139 61 15 chr13 98855268 98855598 -3017571 + MER47A DNA MER2_type 22 366 0 1426 211 62 36 chr13 98856419 98856479 -3016690 - L1MDa LINE L1 -6117 423 366 1754 152 83 9 chr13 98856479 98856828 -3016341 + THE1C LTR MaLR 1 375 0 1426 211 62 36 chr13 98856828 98857155 -3016014 - L1MDa LINE L1 -6174 366 26 396 0 0 0 chr13 98858447 98858491 -3014678 + (TG)n Simple_repeat Simple_repeat 2 45 0 387 242 30 0 chr13 98859946 98860045 -3013124 + MLT1K LTR MaLR 480 581 -7 821 235 97 52 chr13 98860401 98860893 -3012276 + MLT1F1 LTR MaLR 3 559 -8 457 339 34 17 chr13 98861410 98861646 -3011523 - MLT1I LTR MaLR -17 392 153 5494 59 133 1 chr13 98861699 98862427 -3010742 - LTR12 LTR ERV1 -2 824 1 15953 78 15 10 chr13 98862427 98864585 -3008584 - HERV9 LTR ERV1 0 8399 6231 46936 83 12 16 chr13 98864727 98871045 -3002124 - HERV9 LTR ERV1 -2068 6331 40 6101 55 69 13 chr13 98871058 98871840 -3001329 - LTR12 LTR ERV1 0 826 1 328 330 0 9 chr13 98873214 98873323 -2999846 - MIR3 SINE MIR -8 200 93 237 316 178 13 chr13 98875025 98875177 -2997992 - MER5B DNA MER1_type -1 177 1 2744 32 0 3 chr13 98879405 98879717 -2993452 + AluY SINE Alu 1 311 0 1525 207 3 0 chr13 98879903 98880193 -2992976 - AluJo SINE Alu -21 291 1 2303 92 3 0 chr13 98880773 98881065 -2992104 - AluSp SINE Alu -20 293 1 449 300 33 11 chr13 98881611 98881791 -2991378 - Charlie8 DNA MER1_type -2197 220 37 367 258 126 19 chr13 98885493 98885652 -2987517 + MER104 DNA MER2_type 1 176 -4 202 289 84 12 chr13 98885652 98885735 -2987434 - MIR SINE MIR -77 131 43 361 206 50 113 chr13 98886075 98886216 -2986953 - L1ME3A LINE L1 -9 6161 6030 657 182 23 8 chr13 98887804 98887936 -2985233 - L1MA3 LINE L1 -1 6304 6171 392 157 37 46 chr13 98887942 98888050 -2985119 - L1M1 LINE L1 -7440 125 19 760 266 108 29 chr13 98888254 98888743 -2984426 - HAL1 LINE L1 -353 2154 1627 793 169 66 70 chr13 98888749 98888991 -2984178 - L1MDa LINE L1 -4818 1722 1482 266 298 113 78 chr13 98889659 98890041 -2983128 + L1ME LINE L1 5410 5804 -317 3066 180 77 10 chr13 98891736 98892408 -2980761 - L1MB3 LINE L1 -20 6163 5447 244 141 14 42 chr13 98893729 98893800 -2979369 + (TA)n Simple_repeat Simple_repeat 2 70 0 435 58 0 0 chr13 98893803 98893855 -2979314 + MLT2A1 LTR ERVL 338 389 -55 975 122 2 5 chr13 98893856 98894408 -2978761 + (TA)n Simple_repeat Simple_repeat 1 550 0 225 196 0 0 chr13 98894543 98894589 -2978580 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 2629 80 23 6 chr13 98894589 98894938 -2978231 - MLT2A1 LTR ERVL -89 355 1 2205 96 33 7 chr13 98895164 98895466 -2977703 - AluSq SINE Alu -3 310 1 1518 166 39 50 chr13 98895576 98895914 -2977255 + MER44D DNA MER2_type 1 604 -5 2356 95 0 0 chr13 98896596 98896891 -2976278 - AluSg SINE Alu -14 296 2 5206 140 78 11 chr13 98898216 98899123 -2974046 + Tigger1 DNA MER2_type 3 970 -1448 * 7666 149 43 5 chr13 98899119 98900414 -2972755 + Tigger1 DNA MER2_type 1074 2418 0 443 304 10 20 chr13 98900884 98901088 -2972081 + L1MC5 LINE L1 7478 7679 -282 375 331 131 41 chr13 98901984 98902497 -2970672 - L1MEd LINE L1 -4974 1145 587 31 26 0 0 chr13 98906933 98906971 -2966198 + AT_rich Low_complexity Low_complexity 1 38 0 261 302 47 16 chr13 98907372 98907501 -2965668 - L2 LINE L2 -3 3310 3178 237 286 165 0 chr13 98908585 98908676 -2964493 - MIR SINE MIR -61 147 42 1257 199 73 51 chr13 98909175 98909531 -2963638 - L1M4b LINE L1 -5281 1578 1215 194 133 0 44 chr13 98909531 98909576 -2963593 + (TTTTTA)n Simple_repeat Simple_repeat 2 44 0 1733 163 7 3 chr13 98909667 98909950 -2963219 + AluJo SINE Alu 14 297 -15 379 315 14 68 chr13 98910389 98910611 -2962558 + L1ME LINE L1 5536 5745 -376 186 171 29 0 chr13 98911267 98911302 -2961867 + MIR SINE MIR 110 145 -63 1748 103 87 98 chr13 98911833 98912212 -2960957 - THE1C LTR MaLR 0 375 1 1008 263 17 44 chr13 98916015 98916376 -2956793 - L1ME3 LINE L1 0 6162 5812 9263 89 39 1 chr13 98917518 98918758 -2954411 - HSMAR1 DNA Mariner 0 1287 1 2343 97 0 7 chr13 98920054 98920354 -2952815 - AluSx SINE Alu -14 298 1 777 265 42 9 chr13 98920452 98920667 -2952502 + MER58A DNA MER1_type 1 222 -2 681 282 118 31 chr13 98920747 98921956 -2951213 - L1MEc LINE L1 -4443 1637 295 660 245 168 48 chr13 98922090 98922482 -2950687 - LTR34 LTR ERV1 -4 695 257 345 239 55 9 chr13 98922641 98922750 -2950419 - MER4C LTR ERV1 -349 116 3 262 321 24 0 chr13 98922754 98922838 -2950331 - L1MEc LINE L1 -5952 118 33 224 200 0 0 chr13 98923161 98923201 -2949968 - L2 LINE L2 -96 3176 3137 1483 233 84 93 chr13 98923427 98924032 -2949137 - MER21B LTR ERV1 -211 652 53 463 278 155 5 chr13 98925438 98925625 -2947544 - MIR SINE MIR -7 255 41 20428 141 51 60 chr13 98930284 98935120 -2938049 + L1M1 LINE L1 5 4810 -2755 237 65 0 0 chr13 98935181 98935212 -2937957 + (TG)n Simple_repeat Simple_repeat 2 32 0 665 233 17 28 chr13 98937013 98937193 -2935976 + MER3 DNA MER1_type 24 201 -8 1321 103 0 0 chr13 98937759 98937933 -2935236 + AluSp SINE Alu 136 309 -4 672 229 80 10 chr13 98938420 98938731 -2934438 + MLT1A1 LTR MaLR 1 364 -1 23 97 0 0 chr13 98941216 98941288 -2931881 + AT_rich Low_complexity Low_complexity 1 72 0 29 0 0 0 chr13 98941732 98941761 -2931408 + AT_rich Low_complexity Low_complexity 1 29 0 238 103 0 26 chr13 98947334 98947373 -2925796 - MER58 DNA MER1_type -2214 206 169 23 0 0 0 chr13 98947839 98947862 -2925307 + AT_rich Low_complexity Low_complexity 1 23 0 260 237 43 75 chr13 98949514 98949607 -2923562 + MER103 DNA DNA 56 145 -21 21 0 0 0 chr13 98950557 98950578 -2922591 + AT_rich Low_complexity Low_complexity 1 21 0 358 282 46 15 chr13 98951969 98952100 -2921069 + MER103 DNA DNA 30 164 -2 232 274 83 0 chr13 98952213 98952297 -2920872 - MER20 DNA MER1_type -58 161 71 252 0 0 0 chr13 98954054 98954082 -2919087 + (T)n Simple_repeat Simple_repeat 1 28 0 400 247 113 43 chr13 98955584 98955770 -2917399 - MER58A DNA MER1_type 0 224 26 861 209 76 36 chr13 98958091 98958316 -2914853 - L1PA16 LINE L1 -5 6161 5928 21 36 0 0 chr13 98958977 98959005 -2914164 + AT_rich Low_complexity Low_complexity 1 28 0 180 300 0 0 chr13 98959823 98959873 -2913296 + L2 LINE L2 3263 3312 -1 22 70 0 0 chr13 98961219 98961262 -2911907 + AT_rich Low_complexity Low_complexity 1 43 0 2253 103 0 7 chr13 98962101 98962402 -2910767 - AluSx SINE Alu -13 299 1 1217 188 91 46 chr13 98963282 98963611 -2909558 - MER2 DNA MER2_type 0 344 1 24 0 0 0 chr13 98966497 98966521 -2906648 + AT_rich Low_complexity Low_complexity 1 24 0 1628 251 81 17 chr13 98971161 98971691 -2901478 - L1MD2 LINE L1 -240 6119 5556 380 257 10 0 chr13 98971687 98971788 -2901381 - L1MDa LINE L1 -4249 2291 2190 * 821 185 0 0 chr13 98971799 98971929 -2901240 - FLAM_C SINE Alu -1 132 3 7053 226 39 16 chr13 98971931 98972243 -2900926 - L1 LINE L1 -2305 5260 4956 1842 176 0 3 chr13 98972243 98972538 -2900631 + AluJb SINE Alu 1 294 -18 7053 226 39 16 chr13 98972538 98974390 -2898779 - L1 LINE L1 -2609 4956 3046 4205 223 59 35 chr13 98974411 98975805 -2897364 + L1ME1 LINE L1 3934 5293 -873 2291 106 0 0 chr13 98975805 98976108 -2897061 + AluY SINE Alu 1 303 -8 4205 223 59 35 chr13 98976108 98976346 -2896823 + L1ME1 LINE L1 5293 5524 -642 2262 97 0 0 chr13 98976346 98976650 -2896519 + AluSc SINE Alu 1 304 0 4205 223 59 35 chr13 98976650 98977203 -2895966 + L1ME1 LINE L1 5524 6161 -5 632 221 13 0 chr13 98977068 98977217 -2895952 + L1MA10 LINE L1 6184 6334 0 515 335 68 33 chr13 98977216 98977287 -2895882 + HERVL LTR ERVL 2266 2333 -3321 1578 151 172 55 chr13 98977287 98977670 -2895499 + MSTA LTR MaLR 1 428 0 515 335 68 33 chr13 98977670 98977939 -2895230 + HERVL LTR ERVL 2333 2618 -3036 441 204 34 0 chr13 98977968 98978056 -2895113 - MER94 DNA DNA -43 91 1 446 296 39 22 chr13 98978379 98978558 -2894611 + HERVL LTR ERVL 3774 3955 -1809 2176 162 24 24 chr13 98978562 98978988 -2894181 - MSTB LTR MaLR 0 426 1 1015 316 86 2 chr13 98979030 98979425 -2893744 + HERVL LTR ERVL 4031 4458 -1306 2213 110 30 0 chr13 98980503 98980842 -2892327 - AluSx SINE Alu 0 348 1 620 308 37 0 chr13 98980872 98981086 -2892083 + MER58A DNA MER1_type 3 224 0 961 187 16 16 chr13 98983518 98983700 -2889469 - AluJb SINE Alu -15 297 116 265 282 169 14 chr13 98983939 98984081 -2889088 + MIR3 SINE MIR 35 198 -10 1324 202 30 81 chr13 98986688 98987094 -2886075 - MLT1B LTR MaLR 0 390 6 1077 259 186 20 chr13 98987580 98988031 -2885138 + MLT1F LTR MaLR 6 531 -11 6597 216 52 22 chr13 98990051 98991271 -2881898 + L1MB7 LINE L1 1 1314 -5332 1557 144 101 45 chr13 98991271 98991626 -2881543 + THE1C LTR MaLR 1 375 0 6597 216 52 22 chr13 98991626 98992410 -2880759 + L1MB7 LINE L1 1314 2073 -4573 6119 182 37 24 chr13 98992411 98994633 -2878536 + L1MB7 LINE L1 4398 6646 -36 1542 196 104 77 chr13 98995048 98995636 -2877533 + LTR38B LTR ERV1 2 602 -9 197 214 57 14 chr13 98999278 98999348 -2873821 - MIR SINE MIR -167 95 23 2208 101 20 13 chr13 99003437 99003743 -2869426 - AluSx SINE Alu 0 312 5 187 128 128 0 chr13 99005086 99005133 -2868036 - L2 LINE L2 -58 3255 3203 319 345 132 0 chr13 99005349 99005523 -2867646 - L2 LINE L2 -481 2833 2637 746 203 0 0 chr13 99005607 99005750 -2867419 + AluJb SINE Alu 142 284 -28 1088 251 14 1 chr13 99005923 99006202 -2866967 - L1MB8 LINE L1 -319 5859 5615 1607 202 23 6 chr13 99006215 99006562 -2866607 + MLT1A1 LTR MaLR 13 365 0 471 192 2 0 chr13 99006562 99006658 -2866511 - L1MB8 LINE L1 -566 5618 5521 638 214 133 0 chr13 99007319 99007515 -2865654 + MLT1C LTR MaLR 8 229 -238 1657 123 105 37 chr13 99008287 99008638 -2864531 + THE1C LTR MaLR 1 375 0 1250 235 134 0 chr13 99009238 99009642 -2863527 + MLT1C LTR MaLR 1 458 -9 2629 56 0 0 chr13 99011338 99011644 -2861525 - AluY SINE Alu -5 306 1 2421 81 0 3 chr13 99012956 99013251 -2859918 - AluSx SINE Alu -18 294 1 2146 135 3 0 chr13 99013613 99013909 -2859260 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr13 99015426 99015447 -2857722 + AT_rich Low_complexity Low_complexity 1 21 0 264 281 117 8 chr13 99018948 99019076 -2854093 - L1MC/D LINE L1 -1985 5823 5682 200 220 46 101 chr13 99020535 99020644 -2852525 + MER5B DNA MER1_type 40 142 -36 260 245 63 56 chr13 99021427 99021570 -2851599 + L1ME1 LINE L1 3878 4021 -2125 381 290 195 0 chr13 99021622 99021960 -2851209 + L1ME1 LINE L1 4135 4538 -1608 363 283 162 41 chr13 99023743 99023891 -2849278 + L1ME1 LINE L1 4875 5004 -1160 1465 166 100 19 chr13 99023891 99024162 -2849007 + AluJo SINE Alu 1 293 -19 363 283 162 41 chr13 99024162 99024657 -2848512 + L1ME1 LINE L1 5004 5585 -579 714 239 70 49 chr13 99024755 99025114 -2848055 - MLT1E3 LTR MaLR -78 546 120 228 167 62 0 chr13 99025538 99025586 -2847583 - MLT1E3 LTR MaLR -573 51 1 320 349 47 0 chr13 99025688 99025794 -2847375 + L1ME1 LINE L1 5840 5950 -216 2361 100 0 0 chr13 99026551 99026850 -2846319 - AluSx SINE Alu -13 299 1 240 243 284 12 chr13 99027108 99027277 -2845892 - L1M4 LINE L1 -5453 1089 875 285 309 86 14 chr13 99028812 99028951 -2844218 + L2 LINE L2 3159 3307 -6 2302 108 3 7 chr13 99030221 99030526 -2842643 - AluSx SINE Alu -8 304 1 294 200 71 59 chr13 99030546 99030631 -2842538 + MER82 DNA MER2_type 524 609 -44 1421 215 49 30 chr13 99030637 99031004 -2842165 + MLT1A2 LTR MaLR 1 374 0 353 284 123 13 chr13 99031442 99031597 -2841572 + MER21B LTR ERV1 409 580 -283 1020 247 100 35 chr13 99033152 99033614 -2839555 + MLT1D LTR MaLR 10 501 -4 469 304 189 3 chr13 99033814 99034196 -2838973 - L2 LINE L2 -2058 1256 804 394 293 57 14 chr13 99034370 99034510 -2838659 - MIR SINE MIR -66 196 51 609 256 32 0 chr13 99035098 99035254 -2837915 + MER58A DNA MER1_type 28 188 -36 475 294 123 18 chr13 99035257 99035533 -2837636 + MER115 DNA AcHobo 35 339 -354 1533 267 15 6 chr13 99035755 99036234 -2836935 + L1ME4a LINE L1 4866 5348 -798 473 206 34 57 chr13 99036265 99036290 -2836879 + L1MB8 LINE L1 6005 6029 -149 429 20 0 0 chr13 99036290 99036340 -2836829 + (TA)n Simple_repeat Simple_repeat 2 51 0 2203 110 10 0 chr13 99036340 99036632 -2836537 - AluSx SINE Alu -17 295 1 473 206 34 57 chr13 99036632 99036780 -2836389 + L1MB8 LINE L1 6027 6175 -3 265 331 99 15 chr13 99036788 99037030 -2836139 + MLT1G1 LTR MaLR 1 224 -331 416 271 34 0 chr13 99037192 99037310 -2835859 + MLT1G1 LTR MaLR 468 589 -6 583 260 146 41 chr13 99038163 99038532 -2834637 + L1ME4a LINE L1 5679 6086 -35 547 55 0 0 chr13 99039225 99039298 -2833871 - L1P1 LINE L1 -704 5451 5379 587 53 0 0 chr13 99039298 99039367 -2833802 + L1PA3 LINE L1 6080 6155 0 216 0 0 0 chr13 99039583 99039607 -2833562 + (A)n Simple_repeat Simple_repeat 1 24 0 581 188 39 39 chr13 99040509 99040624 -2832545 - L1MC4 LINE L1 -149 7893 7776 2480 116 6 3 chr13 99040624 99040978 -2832191 - THE1A LTR MaLR 0 355 1 581 188 39 39 chr13 99040978 99041016 -2832153 - L1MC4 LINE L1 -265 7777 7740 1824 194 90 27 chr13 99041025 99041360 -2831809 + MSTC LTR MaLR 1 366 -62 2340 89 7 3 chr13 99041360 99041652 -2831517 + AluSg SINE Alu 1 293 -17 1824 194 90 27 chr13 99041652 99041717 -2831452 + MSTC LTR MaLR 366 426 -2 282 198 37 12 chr13 99041978 99042059 -2831110 - L1MC4 LINE L1 -480 7562 7480 526 294 85 0 chr13 99042248 99042449 -2830720 - L1MC4 LINE L1 -1024 7018 6801 186 189 0 0 chr13 99042715 99042752 -2830417 + T-rich Low_complexity Low_complexity 1 37 0 266 0 0 29 chr13 99043117 99043152 -2830017 + (TG)n Simple_repeat Simple_repeat 1 34 0 345 314 112 0 chr13 99043829 99043998 -2829171 - MIR SINE MIR -54 208 21 186 103 0 0 chr13 99044153 99044182 -2828987 + (TCTCTG)n Simple_repeat Simple_repeat 4 32 0 324 0 0 0 chr13 99044193 99044229 -2828940 + (CA)n Simple_repeat Simple_repeat 2 37 0 2063 146 125 10 chr13 99044334 99044718 -2828451 + MSTA LTR MaLR 1 428 0 411 289 116 24 chr13 99045187 99045481 -2827688 - L1MC4 LINE L1 -378 7664 7344 3271 284 97 56 chr13 99045488 99049226 -2823943 - L1MC4a LINE L1 -612 7196 3278 2161 142 0 0 chr13 99049226 99049528 -2823641 - AluSx SINE Alu -8 304 3 3271 284 97 56 chr13 99049528 99049884 -2823285 - L1MC4a LINE L1 -4530 3278 2938 332 281 93 80 chr13 99049907 99050220 -2822949 - L1 LINE L1 -2665 3481 3165 2081 144 0 22 chr13 99050467 99050779 -2822390 - AluSx SINE Alu -7 305 1 3320 219 103 96 chr13 99050928 99051522 -2821647 - L1MD3 LINE L1 -11 7984 7396 361 212 71 18 chr13 99051522 99051635 -2821534 - MLT1F1 LTR MaLR -443 124 6 3320 219 103 96 chr13 99051635 99052220 -2820949 - L1MD3 LINE L1 -599 7396 6684 261 109 0 0 chr13 99052478 99052524 -2820645 + (T)n Simple_repeat Simple_repeat 1 46 0 182 184 20 82 chr13 99053156 99053205 -2819964 + L2 LINE L2 3268 3313 0 715 328 90 40 chr13 99055590 99055989 -2817180 - HAL1 LINE L1 -1246 1261 843 444 306 70 59 chr13 99056274 99056646 -2816523 - HAL1 LINE L1 -2041 466 91 375 291 0 0 chr13 99056891 99057150 -2816019 + (TG)n Simple_repeat Simple_repeat 1 259 0 455 253 6 0 chr13 99057193 99057363 -2815806 + (TG)n Simple_repeat Simple_repeat 2 172 0 239 296 50 40 chr13 99058364 99058563 -2814606 + L1ME4a LINE L1 5764 5964 -157 233 160 0 20 chr13 99058564 99058614 -2814555 + (TA)n Simple_repeat Simple_repeat 1 49 0 362 221 81 60 chr13 99058623 99058772 -2814397 + L1MC4 LINE L1 6552 6703 -1339 359 327 18 9 chr13 99058796 99058906 -2814263 + L1MC4 LINE L1 6593 6703 -1339 358 265 151 96 chr13 99058877 99058908 -2814261 + L1ME4a LINE L1 5935 5963 -158 * 2098 187 9 42 chr13 99058908 99059336 -2813833 - MLT2D LTR ERVL 0 414 1 358 265 151 96 chr13 99059336 99059470 -2813699 + L1ME4a LINE L1 5963 6109 -12 240 311 9 19 chr13 99059653 99059759 -2813410 + MIR SINE MIR 33 137 -71 281 307 32 71 chr13 99059855 99060135 -2813034 + MER20B DNA MER1_type 113 381 -402 268 273 142 17 chr13 99060256 99060432 -2812737 + MER20B DNA MER1_type 562 759 -24 409 328 0 17 chr13 99061289 99061469 -2811700 + (TG)n Simple_repeat Simple_repeat 1 177 0 199 173 39 0 chr13 99062059 99062111 -2811058 + (CA)n Simple_repeat Simple_repeat 1 54 0 222 286 29 0 chr13 99062169 99062239 -2810930 + (CA)n Simple_repeat Simple_repeat 1 72 0 295 270 178 11 chr13 99063555 99063729 -2809440 + MLT1I LTR MaLR 207 409 0 2373 201 142 25 chr13 99063779 99064432 -2808737 - MER44D DNA MER2_type 0 605 4 2557 66 3 0 chr13 99064556 99064857 -2808312 + AluSq SINE Alu 1 302 -11 357 75 0 0 chr13 99065039 99065092 -2808077 - MADE1 DNA Mariner 0 80 28 2174 106 7 0 chr13 99066421 99066704 -2806465 + AluSg SINE Alu 1 285 -25 2259 230 73 14 chr13 99066769 99067466 -2805703 + L1MC1 LINE L1 5596 6333 0 2440 112 34 17 chr13 99067768 99068126 -2805043 + THE1B LTR MaLR 1 364 0 659 239 105 5 chr13 99068846 99069055 -2804114 + MLT1C LTR MaLR 35 264 -203 2072 146 7 0 chr13 99070495 99070796 -2802373 - AluSx SINE Alu -9 303 1 217 313 184 0 chr13 99072184 99072331 -2800838 - MIR SINE MIR -81 181 8 400 317 134 6 chr13 99076089 99076253 -2796916 + MIR SINE MIR 49 233 -29 411 238 48 0 chr13 99076689 99076773 -2796396 + MER21B LTR ERV1 2 89 -774 2124 145 0 7 chr13 99076781 99077091 -2796078 - AluSx SINE Alu -4 308 1 507 248 115 67 chr13 99077241 99077511 -2795658 + MER21B LTR ERV1 185 467 -396 833 204 53 36 chr13 99077711 99077936 -2795233 + MER21B LTR ERV1 511 739 -124 274 118 11 43 chr13 99079960 99080053 -2793116 + (CCCCCA)n Simple_repeat Simple_repeat 6 95 0 214 281 0 0 chr13 99080061 99080125 -2793044 + C-rich Low_complexity Low_complexity 1 64 0 5061 153 26 16 chr13 99080876 99082025 -2791144 + L1PA16 LINE L1 5007 6166 0 246 313 135 31 chr13 99082935 99083098 -2790071 - MIR3 SINE MIR -12 196 17 394 285 14 35 chr13 99083908 99084344 -2788825 + GA-rich Low_complexity Low_complexity 1 426 0 1283 219 82 31 chr13 99084891 99085247 -2787922 - MLT1A2 LTR MaLR 0 374 1 1977 214 93 40 chr13 99085253 99085358 -2787811 - MER82 DNA MER2_type -44 609 511 2273 109 3 7 chr13 99085358 99085660 -2787509 + AluSx SINE Alu 1 301 -11 1977 214 93 40 chr13 99085660 99086111 -2787058 - MER82 DNA MER2_type -142 511 23 278 290 9 36 chr13 99087539 99087876 -2785293 + CT-rich Low_complexity Low_complexity 1 328 0 355 260 23 40 chr13 99087912 99088089 -2785080 + CT-rich Low_complexity Low_complexity 2 175 0 261 57 0 0 chr13 99091975 99092010 -2781159 + (A)n Simple_repeat Simple_repeat 1 35 0 259 299 120 36 chr13 99092907 99093074 -2780095 - MER115 DNA AcHobo -9 684 504 245 330 107 4 chr13 99093207 99093440 -2779729 - MER115 DNA AcHobo -427 266 10 214 341 141 7 chr13 99093741 99093876 -2779293 + MIR SINE MIR 22 174 -88 25 0 0 0 chr13 99096922 99096947 -2776222 + GC_rich Low_complexity Low_complexity 1 25 0 278 279 0 48 chr13 99097153 99097257 -2775912 + C-rich Low_complexity Low_complexity 1 99 0 214 404 34 0 chr13 99099252 99099398 -2773771 - MIR SINE MIR -54 208 58 1664 260 138 32 chr13 99101128 99101717 -2771452 - MER82 DNA MER2_type -2 651 1 2402 74 3 0 chr13 99101821 99102117 -2771052 + AluY SINE Alu 1 297 -14 790 256 10 0 chr13 99102274 99102477 -2770692 + MER3 DNA MER1_type 2 206 -3 293 283 155 36 chr13 99104830 99104968 -2768201 - L1MC4 LINE L1 0 8042 7922 306 0 0 0 chr13 99104968 99105002 -2768167 + (CA)n Simple_repeat Simple_repeat 2 35 0 293 283 155 36 chr13 99105002 99105114 -2768055 - L1MC4 LINE L1 -120 7922 7762 370 305 146 0 chr13 99105137 99105301 -2767868 + MER5A DNA MER1_type 1 188 -1 1483 259 51 49 chr13 99105357 99105964 -2767205 - L1MC4 LINE L1 -369 7673 7063 1995 122 49 3 chr13 99105964 99106251 -2766918 - AluSx SINE Alu -12 300 1 1483 259 51 49 chr13 99106251 99106352 -2766817 - L1MC4 LINE L1 -979 7063 6964 256 251 215 49 chr13 99106695 99106858 -2766311 + L2 LINE L2 2305 2494 -820 285 309 86 14 chr13 99108357 99108496 -2764673 + L2 LINE L2 3159 3307 -6 229 327 38 86 chr13 99109687 99109767 -2763402 + L2 LINE L2 2003 2085 -1229 2242 116 7 0 chr13 99109767 99110069 -2763100 - AluY SINE Alu -7 304 1 229 327 38 86 chr13 99110069 99110441 -2762728 + L2 LINE L2 2085 2433 -881 286 291 0 23 chr13 99110930 99111016 -2762153 + MIR SINE MIR 71 154 -108 280 326 22 0 chr13 99111281 99111370 -2761799 - MIR SINE MIR -30 232 142 232 265 88 96 chr13 99111396 99111645 -2761524 - L2 LINE L2 -222 3050 2804 205 300 0 0 chr13 99111735 99111785 -2761384 + (TGGG)n Simple_repeat Simple_repeat 3 52 0 714 187 6 16 chr13 99111787 99111969 -2761200 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 712 176 0 22 chr13 99112022 99112204 -2760965 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 777 208 0 0 chr13 99112246 99112424 -2760745 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 744 229 3 0 chr13 99112463 99112792 -2760377 + (TGGA)n Simple_repeat Simple_repeat 1 330 0 351 324 92 10 chr13 99112803 99113010 -2760159 - L2 LINE L2 -636 2678 2455 245 388 0 0 chr13 99114791 99114894 -2758275 - MIR SINE MIR -102 160 58 256 284 53 0 chr13 99117887 99117982 -2755187 + L2 LINE L2 2303 2402 -912 398 270 0 0 chr13 99117987 99118139 -2755030 + C-rich Low_complexity Low_complexity 1 152 0 1395 272 86 36 chr13 99118146 99118799 -2754370 + L2 LINE L2 2358 3037 -276 395 296 86 95 chr13 99118817 99119022 -2754147 + L2 LINE L2 2846 3051 -262 2343 86 3 7 chr13 99119022 99119313 -2753856 + AluSx SINE Alu 11 300 -12 395 296 86 95 chr13 99119313 99119559 -2753610 + L2 LINE L2 3051 3293 -20 1060 250 22 11 chr13 99119758 99120030 -2753139 - MLT1C LTR MaLR -1 466 192 832 175 35 53 chr13 99120200 99120428 -2752741 - L1MC4 LINE L1 -501 7541 7318 297 0 0 0 chr13 99120765 99120798 -2752371 + (TG)n Simple_repeat Simple_repeat 1 33 0 4045 155 53 17 chr13 99121149 99121924 -2751245 - L1MB3 LINE L1 -1 6182 5380 333 386 58 17 chr13 99122856 99123097 -2750072 + MIR SINE MIR 4 254 -8 233 262 0 0 chr13 99124426 99124487 -2748682 - HAL1 LINE L1 -1042 1465 1405 354 238 38 0 chr13 99124517 99124597 -2748572 - HAL1 LINE L1 -1184 1323 1241 544 187 158 113 chr13 99124812 99125015 -2748154 + MER20 DNA MER1_type 5 216 -3 225 330 76 73 chr13 99125322 99125719 -2747450 - L2 LINE L2 -49 3223 2826 842 181 25 0 chr13 99125773 99125933 -2747236 + MLT2D LTR ERVL 19 182 -232 242 232 43 14 chr13 99126122 99126191 -2746978 - MIR SINE MIR -56 152 82 251 54 27 0 chr13 99128111 99128148 -2745021 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 283 67 0 chr13 99129005 99129065 -2744104 - L2 LINE L2 -4 3268 3205 367 309 40 32 chr13 99129288 99129414 -2743755 + L3 LINE CR1 1446 1572 -5 1795 158 155 11 chr13 99130069 99130443 -2742726 + MSTA LTR MaLR 1 428 0 612 250 101 26 chr13 99130916 99131184 -2741985 - L1ME1 LINE L1 -5 6161 5874 3548 243 31 6 chr13 99131194 99132207 -2740962 + L1ME1 LINE L1 4246 5283 -863 422 214 33 132 chr13 99132230 99132369 -2740800 + L1ME1 LINE L1 5578 5696 -470 2184 137 0 3 chr13 99132369 99132669 -2740500 - AluSq SINE Alu -14 299 1 422 214 33 132 chr13 99132669 99132711 -2740458 + L1ME1 LINE L1 5696 5741 -425 2251 171 10 5 chr13 99132717 99133109 -2740060 + MSTB LTR MaLR 33 426 0 1187 235 63 22 chr13 99133111 99133473 -2739696 + L1ME1 LINE L1 5787 6163 -3 200 355 0 0 chr13 99133528 99133590 -2739579 + MIR SINE MIR 187 248 -14 944 208 77 72 chr13 99135549 99135924 -2737245 + MER74A LTR ERVL 1 377 -181 529 246 12 0 chr13 99137126 99137297 -2735872 + GA-rich Low_complexity Low_complexity 1 173 0 566 194 8 41 chr13 99137310 99137680 -2735489 + GA-rich Low_complexity Low_complexity 1 358 0 2103 113 16 19 chr13 99140675 99140984 -2732185 + AluSg SINE Alu 3 310 0 5499 212 9 13 chr13 99142296 99143108 -2730061 - L1PA16 LINE L1 -10 6156 5342 1790 124 4 40 chr13 99143108 99143382 -2729787 - AluSx SINE Alu 0 312 49 5499 212 9 13 chr13 99143382 99144615 -2728554 - L1PA16 LINE L1 -824 5342 4124 396 0 0 0 chr13 99145458 99145502 -2727667 + (TG)n Simple_repeat Simple_repeat 1 44 0 276 153 68 17 chr13 99146711 99146770 -2726399 + MIR SINE MIR 28 89 -173 1498 108 0 61 chr13 99146801 99147014 -2726155 - AluSg SINE Alu -110 200 1 285 186 17 17 chr13 99147762 99147821 -2725348 - MIR SINE MIR -63 145 87 448 264 16 0 chr13 99148422 99148547 -2724622 + MER105 DNA DNA 71 197 -7 295 345 18 12 chr13 99149080 99149245 -2723924 + MER96 DNA MER1_type? 1 166 -9 2158 127 0 22 chr13 99151166 99151480 -2721689 - AluSx SINE Alu -5 307 1 2436 94 0 0 chr13 99152591 99152898 -2720271 - AluSg SINE Alu -3 307 1 1865 151 154 5 chr13 99154378 99154749 -2718420 + MSTA LTR MaLR 3 428 0 1992 236 16 58 chr13 99155628 99155989 -2717180 + L1MB8 LINE L1 5581 5907 -271 2293 113 3 3 chr13 99155989 99156290 -2716879 + AluSx SINE Alu 1 301 -11 1992 236 16 58 chr13 99156290 99156546 -2716623 + L1MB8 LINE L1 5907 6172 -6 510 293 46 6 chr13 99156611 99156785 -2716384 + L1MEd LINE L1 2 182 -5937 2382 96 3 3 chr13 99159384 99159686 -2713483 - AluSq SINE Alu -11 302 1 468 249 73 6 chr13 99160795 99160960 -2712209 + MLT1C LTR MaLR 289 464 -3 204 183 43 129 chr13 99164211 99164304 -2708865 + MIR SINE MIR 63 147 -61 241 233 17 0 chr13 99164391 99164451 -2708718 - L2 LINE L2 -20 3252 3192 311 365 132 21 chr13 99165631 99166009 -2707160 - L3 LINE CR1 -12 1565 1146 270 250 26 6 chr13 99166042 99166161 -2707008 + MER5A DNA MER1_type 1 189 0 891 200 9 32 chr13 99167421 99167469 -2705700 + L1MA9 LINE L1 6091 6139 -173 2010 123 0 4 chr13 99167469 99167745 -2705424 + AluSx SINE Alu 26 300 -12 891 200 9 32 chr13 99167745 99167916 -2705253 + L1MA9 LINE L1 6139 6305 -7 240 213 0 0 chr13 99168951 99169012 -2704157 + CT-rich Low_complexity Low_complexity 2 62 0 2299 123 0 13 chr13 99169012 99169329 -2703840 - AluSq SINE Alu 0 313 1 182 375 0 0 chr13 99171288 99171352 -2701817 - L3b LINE CR1 -1 1582 1519 2385 108 0 13 chr13 99171507 99171823 -2701346 - AluSx SINE Alu 0 312 1 374 281 25 8 chr13 99172294 99172415 -2700754 - L2 LINE L2 -14 3258 3136 21 0 0 0 chr13 99172875 99172896 -2700273 + AT_rich Low_complexity Low_complexity 1 21 0 1708 235 42 26 chr13 99172901 99173471 -2699698 - L1MC5 LINE L1 -47 7914 7336 613 173 138 6 chr13 99173476 99173632 -2699537 + MER20 DNA MER1_type 5 178 -41 41355 54 2 3 chr13 99173637 99179802 -2693367 - L1PA5 LINE L1 0 6154 1 369 148 16 0 chr13 99179802 99179863 -2693306 + MER20 DNA MER1_type 158 219 0 339 228 81 24 chr13 99179959 99180082 -2693087 - L1MC5 LINE L1 -721 7240 7111 332 366 33 24 chr13 99180520 99180733 -2692436 + MIR SINE MIR 16 230 -32 185 296 99 0 chr13 99180754 99180825 -2692344 + L3 LINE CR1 1497 1574 -3 2457 97 0 0 chr13 99182331 99182641 -2690528 + AluSg SINE Alu 1 310 0 301 360 39 17 chr13 99182713 99182891 -2690278 - MIR SINE MIR -58 204 23 1930 111 3 96 chr13 99183375 99183699 -2689470 + AluSx SINE Alu 3 296 -16 180 0 0 0 chr13 99183699 99183719 -2689450 + (TA)n Simple_repeat Simple_repeat 2 21 0 560 303 0 0 chr13 99185096 99185364 -2687805 + (TGGG)n Simple_repeat Simple_repeat 1 268 0 1682 195 52 52 chr13 99185870 99186352 -2686817 - MER66B LTR ERV1 -1 485 4 4388 108 87 10 chr13 99186603 99187327 -2685842 - LTR17 LTR ERV1 0 780 1 216 204 0 56 chr13 99188063 99188117 -2685052 - L2 LINE L2 0 3313 3263 360 164 33 16 chr13 99188910 99189032 -2684137 + (TG)n Simple_repeat Simple_repeat 1 124 0 576 138 31 6 chr13 99189054 99189213 -2683956 + (TG)n Simple_repeat Simple_repeat 1 163 0 245 162 15 0 chr13 99189226 99189294 -2683875 + (TG)n Simple_repeat Simple_repeat 1 69 0 802 184 0 0 chr13 99191037 99191173 -2681996 - FLAM_C SINE Alu -2 141 6 317 294 52 22 chr13 99192043 99192179 -2680990 + MLT1D LTR MaLR 2 141 -364 445 318 49 34 chr13 99194136 99194400 -2678769 + L1ME3A LINE L1 5609 5876 -294 296 310 10 10 chr13 99194481 99194581 -2678588 + (TG)n Simple_repeat Simple_repeat 2 101 0 321 264 0 0 chr13 99195473 99195583 -2677586 + (CA)n Simple_repeat Simple_repeat 1 110 0 404 267 193 0 chr13 99196345 99196480 -2676689 + MER5A DNA MER1_type 26 186 -3 228 188 104 31 chr13 99198764 99198860 -2674309 - MER20 DNA MER1_type -87 132 30 870 266 148 35 chr13 99198934 99199366 -2673803 + L1MD2 LINE L1 5525 6005 -354 320 179 0 15 chr13 99199392 99199459 -2673710 - MER81 DNA DNA -41 73 8 266 294 47 0 chr13 99199477 99199562 -2673607 + L1MD2 LINE L1 6044 6132 -227 212 269 26 51 chr13 99199958 99200036 -2673133 - MIR SINE MIR -76 186 111 275 23 47 0 chr13 99204471 99204514 -2668655 + L1PA6 LINE L1 6110 6154 0 251 262 0 16 chr13 99208496 99208557 -2664612 + GA-rich Low_complexity Low_complexity 2 61 0 346 288 29 7 chr13 99208968 99209107 -2664062 - MER104 DNA Tc2 -32 148 7 26 0 0 0 chr13 99209263 99209289 -2663880 + AT_rich Low_complexity Low_complexity 1 26 0 205 273 0 0 chr13 99210694 99210738 -2662431 + polypurine Low_complexity Low_complexity 2 45 0 256 269 157 0 chr13 99211806 99211914 -2661255 + MIR SINE MIR 82 206 -56 674 197 0 16 chr13 99212075 99212258 -2660911 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 560 239 0 3 chr13 99212298 99212705 -2660464 + (TCCA)n Simple_repeat Simple_repeat 1 405 0 683 191 0 22 chr13 99212743 99212926 -2660243 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 534 268 0 0 chr13 99212939 99213294 -2659875 + (TCCA)n Simple_repeat Simple_repeat 1 355 0 507 322 24 19 chr13 99213302 99213513 -2659656 - L2 LINE L2 0 3313 3102 1706 238 33 22 chr13 99213675 99214125 -2659044 - MLT1C LTR MaLR -1 466 12 184 275 55 22 chr13 99214314 99214405 -2658764 - L2 LINE L2 -4 3268 3175 182 325 71 26 chr13 99215154 99215238 -2657931 + MIR SINE MIR 42 128 -103 217 373 20 0 chr13 99216880 99216982 -2656187 + MER91A DNA MER1_type 1 104 -92 964 218 153 8 chr13 99219510 99219772 -2653397 + MER7A DNA MER2_type 49 346 0 207 139 0 0 chr13 99220130 99220166 -2653003 + (GGAGAA)n Simple_repeat Simple_repeat 5 40 0 387 327 87 46 chr13 99220172 99220700 -2652469 + HAL1 LINE L1 862 1277 -1230 262 315 22 0 chr13 99220700 99220789 -2652380 + GA-rich Low_complexity Low_complexity 2 92 0 1477 181 32 20 chr13 99222306 99222654 -2650515 - L1PA16 LINE L1 -16 6150 5799 974 222 62 30 chr13 99225543 99225873 -2647296 - Tigger7 DNA MER2_type -1 2490 1 529 302 64 17 chr13 99225962 99226209 -2646960 + MLT1G1 LTR MaLR 244 579 -16 880 213 100 4 chr13 99227604 99227853 -2645316 - ORSL DNA AcHobo -2 273 1 636 284 46 23 chr13 99228581 99228799 -2644370 + MIR SINE MIR 38 260 -2 929 184 0 2 chr13 99228934 99229364 -2643805 + (TCCA)n Simple_repeat Simple_repeat 1 428 0 221 385 86 0 chr13 99229365 99229482 -2643687 - L2 LINE L2 0 3272 3146 410 245 10 0 chr13 99229689 99229787 -2643382 + MER5A DNA MER1_type 11 109 -80 235 361 66 12 chr13 99231576 99231820 -2641349 + L2 LINE L2 2622 2878 -436 207 319 28 0 chr13 99232058 99232130 -2641039 + L2 LINE L2 3196 3269 -3 1517 195 79 99 chr13 99232791 99232842 -2640327 + LTR49 LTR ERV1 2 52 -543 2054 155 0 13 chr13 99232842 99233146 -2640023 - AluSx SINE Alu -12 300 1 1517 195 79 99 chr13 99233146 99233700 -2639469 + LTR49 LTR ERV1 52 595 0 1129 239 157 50 chr13 99234364 99234983 -2638186 + MER20B DNA MER1_type 99 783 0 2286 129 3 0 chr13 99235205 99235516 -2637653 - AluSx SINE Alu 0 312 1 700 216 105 117 chr13 99235594 99235945 -2637224 + MER7A DNA MER2_type 2 346 0 252 296 15 85 chr13 99238041 99238301 -2634868 + L1MC4 LINE L1 7801 8042 0 24 77 0 0 chr13 99238309 99238361 -2634808 + AT_rich Low_complexity Low_complexity 1 52 0 322 259 354 6 chr13 99238430 99238604 -2634565 - MIR SINE MIR -13 249 17 2430 93 3 0 chr13 99240976 99241287 -2631882 - AluSx SINE Alu 0 312 1 821 292 36 18 chr13 99241376 99241717 -2631452 + MLT1C LTR MaLR 108 612 -12 711 236 0 0 chr13 99242103 99242447 -2630722 + C-rich Low_complexity Low_complexity 1 344 0 263 174 58 14 chr13 99242508 99242577 -2630592 + MIR SINE MIR 7 78 -184 743 223 68 10 chr13 99242583 99242789 -2630380 + MER20 DNA MER1_type 2 219 0 2245 114 0 3 chr13 99244102 99244399 -2628770 - AluSx SINE Alu -16 296 1 206 288 34 0 chr13 99249274 99249333 -2623836 + L2 LINE L2 3010 3070 -202 283 263 107 71 chr13 99249665 99250019 -2623150 - MLT1H1 LTR MaLR -75 474 60 21 0 0 0 chr13 99250171 99250192 -2622977 + AT_rich Low_complexity Low_complexity 1 21 0 326 343 108 20 chr13 99250396 99251189 -2621980 + L1P LINE L1 4118 4980 -1166 251 318 87 63 chr13 99251520 99251900 -2621269 + L1ME4a LINE L1 5352 5740 -381 580 196 130 0 chr13 99251907 99252045 -2621124 + FRAM SINE Alu 6 161 -15 307 363 74 52 chr13 99252074 99252399 -2620770 + L1ME4a LINE L1 5772 6103 -18 205 205 0 0 chr13 99253188 99253227 -2619942 + A-rich Low_complexity Low_complexity 1 39 0 2634 113 44 0 chr13 99254333 99254741 -2618428 - LOR1a LTR ERV1 0 497 72 1080 239 83 25 chr13 99256126 99256452 -2616717 - MLT1A2 LTR MaLR -11 363 19 1925 160 3 22 chr13 99257149 99257462 -2615707 - AluJb SINE Alu -5 307 1 228 345 46 35 chr13 99258681 99258878 -2614291 - MLT1I LTR MaLR -170 239 41 2264 124 0 3 chr13 99259083 99259397 -2613772 - AluSq SINE Alu 0 313 1 237 83 0 0 chr13 99259654 99259690 -2613479 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 288 17 0 chr13 99259756 99259815 -2613354 - MIR SINE MIR -84 124 65 21 0 0 0 chr13 99259830 99259851 -2613318 + AT_rich Low_complexity Low_complexity 1 21 0 2716 165 27 4 chr13 99259855 99260381 -2612788 - L1MB3 LINE L1 -3 6180 5643 622 293 48 18 chr13 99260758 99260987 -2612182 - HAL1 LINE L1 -746 1761 1526 284 267 23 0 chr13 99260989 99261075 -2612094 + MLT1L LTR MaLR 150 237 -378 373 204 26 80 chr13 99261374 99261487 -2611682 + MER3 DNA MER1_type 103 209 0 195 42 0 0 chr13 99261866 99261890 -2611279 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2355 111 0 13 chr13 99261894 99262210 -2610959 - AluSx SINE Alu 0 312 1 1345 118 40 31 chr13 99262461 99262689 -2610480 + MER30 DNA MER1_type 1 230 0 1720 159 3 24 chr13 99265713 99266003 -2607166 - AluJo SINE Alu -24 288 5 2196 109 0 3 chr13 99266269 99266579 -2606590 + AluSx SINE Alu 1 309 0 1222 211 183 20 chr13 99268280 99268673 -2604496 - MLT1C LTR MaLR -10 457 1 272 253 0 36 chr13 99270442 99270525 -2602644 + (TGGA)n Simple_repeat Simple_repeat 4 83 0 327 101 43 65 chr13 99270569 99270708 -2602461 + (TGGA)n Simple_repeat Simple_repeat 3 138 0 437 204 39 50 chr13 99270768 99270949 -2602220 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 254 324 0 0 chr13 99271015 99271089 -2602080 + (TGGG)n Simple_repeat Simple_repeat 2 75 0 203 314 0 29 chr13 99271516 99271618 -2601551 + T-rich Low_complexity Low_complexity 4 102 0 601 250 99 10 chr13 99271869 99272061 -2601108 - MER3 DNA MER1_type 0 209 1 323 263 13 0 chr13 99272102 99272178 -2600991 - MER3 DNA MER1_type -132 77 1 304 276 13 0 chr13 99272219 99272295 -2600874 - MER3 DNA MER1_type -132 77 1 290 289 13 0 chr13 99272336 99272412 -2600757 - MER3 DNA MER1_type -132 77 1 290 289 13 0 chr13 99272453 99272529 -2600640 - MER3 DNA MER1_type -132 77 1 285 265 15 0 chr13 99272577 99272645 -2600524 - MER3 DNA MER1_type -140 69 1 290 289 13 0 chr13 99272686 99272762 -2600407 - MER3 DNA MER1_type -132 77 1 318 353 53 12 chr13 99273412 99273582 -2599587 + MIR SINE MIR 26 202 -60 5978 52 3 4 chr13 99273774 99274548 -2598621 - L1PA6 LINE L1 0 6154 5382 298 25 50 0 chr13 99274724 99274764 -2598405 + U2 snRNA snRNA 1 42 -146 909 233 75 0 chr13 99275419 99275647 -2597522 - MER68 LTR ERV1 -2 560 316 1421 193 79 0 chr13 99275961 99276251 -2596918 - MER68 LTR ERV1 -248 314 2 346 277 75 19 chr13 99276717 99276876 -2596293 + MLT1J LTR MaLR 1 168 -343 289 279 8 49 chr13 99277030 99277152 -2596017 + MLT1J LTR MaLR 393 509 -2 216 283 83 17 chr13 99279465 99279585 -2593584 + MIR SINE MIR 17 144 -64 234 156 0 0 chr13 99280815 99280860 -2592309 + GA-rich Low_complexity Low_complexity 1 45 0 1860 124 67 7 chr13 99281281 99281564 -2591605 + AluSg SINE Alu 1 300 -10 1125 237 111 112 chr13 99284472 99285522 -2587647 - HAL1 LINE L1 -399 2108 1059 7308 41 12 0 chr13 99285522 99286611 -2586558 - L1PA5 LINE L1 0 6154 5077 1125 237 111 112 chr13 99286611 99286862 -2586307 - HAL1 LINE L1 -1448 1059 809 576 281 91 0 chr13 99286867 99287066 -2586103 - MER63 DNA MER1_type -7 1054 838 303 71 0 0 chr13 99287118 99287160 -2586009 + (TCCCC)n Simple_repeat Simple_repeat 1 42 0 336 252 60 66 chr13 99287160 99287311 -2585858 - MER63 DNA MER1_type -279 783 8 25 65 0 0 chr13 99287911 99287957 -2585212 + AT_rich Low_complexity Low_complexity 1 46 0 2070 141 141 11 chr13 99288632 99289009 -2584160 - MSTA LTR MaLR -2 426 1 207 130 56 0 chr13 99289102 99289156 -2584013 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 1578 158 73 55 chr13 99290398 99290879 -2582290 + MSTA LTR MaLR 1 428 0 374 274 9 0 chr13 99293334 99293440 -2579729 + MIR SINE MIR 104 210 -52 199 207 49 85 chr13 99293503 99293585 -2579584 - MIR SINE MIR -115 147 69 266 270 14 14 chr13 99293712 99293786 -2579383 + MIR SINE MIR 113 186 -76 1362 168 56 18 chr13 99293793 99294078 -2579091 + L1MA8 LINE L1 5995 6290 -1 740 297 166 40 chr13 99294080 99294672 -2578497 - MER20B DNA MER1_type -88 695 30 364 360 70 10 chr13 99297630 99297830 -2575339 - MIR SINE MIR -6 256 45 181 298 0 0 chr13 99298206 99298253 -2574916 - L2 LINE L2 -217 3055 3009 590 276 24 43 chr13 99298834 99299219 -2573950 - MER39 LTR ERV1 -1 706 67 3342 114 45 2 chr13 99299311 99299804 -2573365 + MER75 DNA T2_type 1 514 0 389 314 157 21 chr13 99299822 99300109 -2573060 - L1M4 LINE L1 -1091 5055 4730 344 283 116 22 chr13 99300120 99300258 -2572911 - L1M4 LINE L1 -1457 4689 4539 199 167 30 0 chr13 99301310 99301376 -2571793 + (TG)n Simple_repeat Simple_repeat 1 68 0 529 107 61 10 chr13 99301460 99301862 -2571307 + (TG)n Simple_repeat Simple_repeat 1 422 0 304 89 63 0 chr13 99301887 99301966 -2571203 + (TG)n Simple_repeat Simple_repeat 1 84 0 571 81 64 23 chr13 99301994 99302166 -2571003 + (TG)n Simple_repeat Simple_repeat 2 180 0 725 57 45 28 chr13 99302214 99302390 -2570779 + (TG)n Simple_repeat Simple_repeat 2 180 0 609 99 59 9 chr13 99302423 99302645 -2570524 + (TG)n Simple_repeat Simple_repeat 1 233 0 2594 36 0 0 chr13 99303411 99303718 -2569451 + AluY SINE Alu 1 307 -4 208 325 104 39 chr13 99304334 99304488 -2568681 + MIR SINE MIR 20 183 -79 1797 158 47 82 chr13 99306210 99306639 -2566530 + MLT2D LTR ERVL 1 414 0 275 229 0 16 chr13 99309147 99309208 -2563961 - LTR67 LTR ERVL 0 557 498 * 281 212 15 15 chr13 99309205 99309271 -2563898 - LTR67 LTR ERVL -5 552 487 2630 153 24 29 chr13 99312908 99313508 -2559661 - MER4E LTR ERV1 0 766 1 225 336 51 29 chr13 99316315 99316452 -2556717 - MIR3 SINE MIR -10 198 59 364 274 102 19 chr13 99316727 99316884 -2556285 - MIR SINE MIR -67 195 26 243 263 0 0 chr13 99317556 99317636 -2555533 + (CA)n Simple_repeat Simple_repeat 1 80 0 500 89 13 0 chr13 99318068 99318147 -2555022 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 25 0 0 0 chr13 99319450 99319475 -2553694 + AT_rich Low_complexity Low_complexity 1 25 0 2059 110 0 0 chr13 99319525 99319836 -2553333 - AluSx SINE Alu 0 311 1 1628 154 16 29 chr13 99320438 99320750 -2552419 - AluJo SINE Alu -4 308 1 400 304 93 12 chr13 99321018 99321179 -2551990 - MIR SINE MIR -66 196 23 805 134 0 8 chr13 99322667 99322794 -2550375 + FRAM SINE Alu 36 161 -15 22 0 0 0 chr13 99326793 99326815 -2546354 + GC_rich Low_complexity Low_complexity 1 22 0 242 185 15 46 chr13 99327155 99327220 -2545949 - MIR3 SINE MIR -134 74 12 201 191 24 0 chr13 99327302 99327344 -2545825 - MIR SINE MIR -110 152 110 295 205 25 16 chr13 99327720 99327842 -2545327 + CT-rich Low_complexity Low_complexity 2 124 0 414 335 35 4 chr13 99327885 99328112 -2545057 - L1MD2 LINE L1 -17 6342 6109 5342 230 85 35 chr13 99328165 99330513 -2542656 - L1MD2 LINE L1 -444 5915 3448 227 154 26 0 chr13 99330941 99330980 -2542189 + MER6 DNA MER2_type 63 102 -503 1876 125 6 55 chr13 99332718 99333045 -2540124 + AluSx SINE Alu 1 311 -1 332 307 170 18 chr13 99333057 99333275 -2539894 + MIR SINE MIR 12 262 0 284 336 52 0 chr13 99333376 99333510 -2539659 + MIR SINE MIR 71 211 -51 387 292 51 92 chr13 99334232 99334427 -2538742 + MIR SINE MIR 61 247 -15 481 342 60 0 chr13 99335925 99336124 -2537045 - MIR SINE MIR -4 258 48 800 271 19 5 chr13 99336176 99336390 -2536779 - MER58A DNA MER1_type 0 224 8 1345 250 13 13 chr13 99338398 99338714 -2534455 + MER58B DNA MER1_type 26 341 0 183 80 0 0 chr13 99339377 99339402 -2533767 + (TC)n Simple_repeat Simple_repeat 1 25 0 287 356 83 35 chr13 99340116 99340346 -2532823 - MIR SINE MIR -14 248 8 2137 237 23 22 chr13 99343063 99343619 -2529550 + L1MB5 LINE L1 5586 6142 -32 468 368 60 13 chr13 99343628 99343927 -2529242 - L1ME LINE L1 -313 5808 5496 498 258 0 0 chr13 99344016 99344175 -2528994 + CT-rich Low_complexity Low_complexity 2 160 0 761 219 58 114 chr13 99345285 99345678 -2527491 + MLT1B LTR MaLR 4 374 -16 672 257 3 0 chr13 99347214 99347563 -2525606 + (TG)n Simple_repeat Simple_repeat 1 350 0 24 0 0 0 chr13 99347628 99347652 -2525517 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr13 99348066 99348111 -2525058 + AT_rich Low_complexity Low_complexity 1 45 0 203 0 0 130 chr13 99350278 99350355 -2522814 + (CCCCCT)n Simple_repeat Simple_repeat 6 72 0 261 98 0 0 chr13 99350501 99350542 -2522627 + (TTAGGG)n Simple_repeat Simple_repeat 3 43 0 246 242 0 0 chr13 99351765 99351831 -2521338 + CT-rich Low_complexity Low_complexity 3 68 0 275 267 108 8 chr13 99352755 99352875 -2520294 - MLT1J2 LTR MaLR -318 132 1 211 322 58 11 chr13 99353663 99353750 -2519419 + L2 LINE L2 3221 3311 -2 417 285 93 20 chr13 99354746 99354897 -2518272 + MIR SINE MIR 6 167 -95 552 353 43 0 chr13 99355563 99355770 -2517399 - MIR SINE MIR -28 234 19 1658 244 44 24 chr13 99355947 99356401 -2516768 - MLT1C LTR MaLR -4 463 1 2132 131 58 45 chr13 99356520 99356917 -2516252 - MSTB LTR MaLR -9 417 16 369 0 0 0 chr13 99358203 99358244 -2514925 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 114 0 0 chr13 99360393 99360428 -2512741 + (T)n Simple_repeat Simple_repeat 1 35 0 333 118 0 0 chr13 99360770 99360821 -2512348 + (A)n Simple_repeat Simple_repeat 1 51 0 2007 138 3 0 chr13 99363427 99363725 -2509444 + AluSx SINE Alu 1 299 -13 744 246 210 31 chr13 99365587 99365977 -2507192 - MLT1C LTR MaLR 0 467 8 1110 108 13 0 chr13 99367184 99367342 -2505827 + AluY SINE Alu 139 298 -13 552 237 47 117 chr13 99369688 99369945 -2503224 + MLT1B LTR MaLR 152 390 0 249 119 0 0 chr13 99371111 99371153 -2502016 + (CA)n Simple_repeat Simple_repeat 1 42 0 729 190 0 0 chr13 99371174 99371348 -2501821 + (CA)n Simple_repeat Simple_repeat 2 175 0 258 206 0 0 chr13 99371366 99371434 -2501735 + (CA)n Simple_repeat Simple_repeat 2 69 0 224 348 79 0 chr13 99373675 99373764 -2499405 + L2 LINE L2 3136 3231 -41 1900 194 33 25 chr13 99374923 99375321 -2497848 - Tigger2a DNA MER2_type -33 401 1 1837 198 68 8 chr13 99375911 99376311 -2496858 + MSTB LTR MaLR 1 424 -2 570 313 17 0 chr13 99377277 99377456 -2495713 + MER5A DNA MER1_type 7 188 -1 338 270 68 27 chr13 99377559 99377707 -2495462 - MER5B DNA MER1_type -24 154 1 216 119 60 30 chr13 99378093 99378160 -2495009 + CT-rich Low_complexity Low_complexity 2 70 0 200 294 43 76 chr13 99378280 99378372 -2494797 - L2 LINE L2 -12 3301 3213 760 241 24 5 chr13 99378462 99378669 -2494500 - L1MC3 LINE L1 -36 7749 7539 189 212 0 0 chr13 99378699 99378732 -2494437 - MIR SINE MIR -34 228 196 1081 192 33 21 chr13 99379236 99379476 -2493693 - MLT1B LTR MaLR -147 243 1 2293 91 7 3 chr13 99583571 99583867 -2289302 + AluSq SINE Alu 1 297 -16 192 77 0 0 chr13 99585667 99585693 -2287476 + (CATATA)n Simple_repeat Simple_repeat 2 27 0 1311 245 43 33 chr13 99588262 99588682 -2284487 - L1MA9 LINE L1 -202 6110 5687 259 263 40 0 chr13 99591310 99591386 -2281783 - L1MA9 LINE L1 -590 5722 5644 2191 220 19 24 chr13 99591477 99592179 -2280990 - L1MA9 LINE L1 -669 5643 4949 282 56 0 0 chr13 99592179 99592215 -2280954 + (TG)n Simple_repeat Simple_repeat 1 36 0 2191 220 19 24 chr13 99592215 99592429 -2280740 - L1MA9 LINE L1 -1363 4949 4735 1346 125 0 0 chr13 99592429 99592621 -2280548 + AluY SINE Alu 120 311 0 2093 175 19 2 chr13 99592621 99593049 -2280120 - L1MA9 LINE L1 -1414 4732 4298 643 159 0 0 chr13 99593064 99593171 -2279998 + L1 LINE L1 4139 4245 -1901 459 314 55 5 chr13 99594168 99594457 -2278712 + L2 LINE L2 2757 3060 -253 1128 157 0 17 chr13 99594471 99594649 -2278520 - FRAM SINE Alu -4 172 1 1924 139 23 10 chr13 99594689 99594991 -2278178 - AluJb SINE Alu -2 310 5 674 163 141 0 chr13 99595127 99595262 -2277907 + MIR SINE MIR 77 230 -32 1888 116 0 0 chr13 99595371 99595613 -2277556 + AluSx SINE Alu 3 244 -68 2455 82 7 0 chr13 99595840 99596145 -2277024 + AluSx SINE Alu 1 307 -5 299 253 23 23 chr13 99596148 99596235 -2276934 - L2 LINE L2 -480 2834 2748 447 157 0 0 chr13 99596331 99596401 -2276768 - AluJ/FLAM SINE Alu -242 70 1 987 284 132 14 chr13 99598845 99599114 -2274055 - L1MC3 LINE L1 -1609 6176 5940 2016 155 0 0 chr13 99599114 99599410 -2273759 - AluJb SINE Alu -16 296 1 987 284 132 14 chr13 99599410 99599647 -2273522 - L1MC3 LINE L1 -1845 5940 5610 912 214 102 36 chr13 99599654 99599993 -2273176 + L1ME LINE L1 5035 5411 -751 1891 115 43 29 chr13 99599993 99600272 -2272897 + AluSq SINE Alu 5 287 -26 912 214 102 36 chr13 99600272 99600455 -2272714 + L1ME LINE L1 5411 5581 -581 * 4982 225 59 8 chr13 99600451 99602264 -2270905 - L1M4 LINE L1 -412 6270 4358 4247 243 65 34 chr13 99602284 99605504 -2267665 - L1M4c LINE L1 -2451 4193 795 215 346 103 0 chr13 99608064 99608171 -2264998 + MIR SINE MIR 103 220 -42 362 128 26 13 chr13 99608180 99608258 -2264911 - MADE1 DNA Mariner -1 79 1 411 300 7 7 chr13 99608598 99608738 -2264431 + L1ME2 LINE L1 6024 6163 -1 234 404 25 0 chr13 99608851 99609012 -2264157 + (TATATG)n Simple_repeat Simple_repeat 3 167 0 * 302 456 0 0 chr13 99608897 99609066 -2264103 + (CACG)n Simple_repeat Simple_repeat 4 172 0 268 394 0 22 chr13 99609026 99609206 -2263963 + (CATATA)n Simple_repeat Simple_repeat 1 176 0 * 360 336 14 20 chr13 99609310 99609456 -2263713 + (CATG)n Simple_repeat Simple_repeat 3 147 0 227 203 17 0 chr13 99609860 99609919 -2263250 + (CAT)n Simple_repeat Simple_repeat 1 60 0 1212 148 92 16 chr13 99610310 99610560 -2262609 - THE1C LTR MaLR -4 371 103 715 239 14 2 chr13 99610660 99610936 -2262233 + MLT1A1 LTR MaLR 32 362 -3 2244 118 3 6 chr13 99611859 99612172 -2260997 - AluSx SINE Alu 0 312 1 308 317 37 12 chr13 99615100 99615325 -2257844 - MER21A LTR ERV1 -9 596 522 263 239 0 30 chr13 99615668 99615735 -2257434 - MER77 LTR ERV1 -475 130 66 212 352 32 24 chr13 99616244 99616369 -2256800 - MIR SINE MIR -73 189 64 364 288 36 18 chr13 99616692 99616803 -2256366 + MER63A DNA MER1_type 3 115 0 260 282 28 0 chr13 99616803 99616874 -2256295 + MER63A DNA MER1_type 43 115 0 254 246 35 0 chr13 99616951 99617008 -2256161 + MER63A DNA MER1_type 56 114 0 262 228 35 0 chr13 99617018 99617075 -2256094 + MER63A DNA MER1_type 57 115 0 361 288 112 0 chr13 99617104 99617229 -2255940 + MER63A DNA MER1_type 72 210 0 261 349 167 22 chr13 99617229 99617498 -2255671 - L3 LINE CR1 -787 790 483 22 0 0 0 chr13 99617503 99617525 -2255644 + AT_rich Low_complexity Low_complexity 1 22 0 329 228 0 8 chr13 99619027 99619154 -2254015 + C-rich Low_complexity Low_complexity 2 127 0 292 179 0 0 chr13 99619549 99619605 -2253564 - AluSp/q SINE Alu 0 303 248 247 167 37 0 chr13 99619682 99619736 -2253433 - AluSp/q SINE Alu 0 303 248 2141 142 0 3 chr13 99619834 99620144 -2253025 - AluSx SINE Alu -3 309 1 344 151 51 0 chr13 99620860 99620938 -2252231 - L1MA2 LINE L1 -2 6298 6214 1249 212 85 9 chr13 99621908 99622337 -2250832 + MER74A LTR ERVL 1 549 -9 2017 142 13 3 chr13 99622337 99622639 -2250530 + AluSq SINE Alu 1 305 -8 1249 212 85 9 chr13 99622639 99622650 -2250519 + MER74A LTR ERVL 549 558 0 693 216 13 13 chr13 99625884 99626037 -2247132 - FRAM SINE Alu -13 153 1 573 286 74 30 chr13 99626227 99626524 -2246645 + LTR16C LTR ERVL 181 490 -1 200 132 53 0 chr13 99634624 99634662 -2238507 + GA-rich Low_complexity Low_complexity 2 41 0 308 225 62 0 chr13 99635386 99635466 -2237703 - MLT1C LTR MaLR -375 92 8 356 264 18 0 chr13 99635547 99635657 -2237512 - Charlie2a DNA MER1_type -31 2831 2720 281 288 9 9 chr13 99635658 99635769 -2237400 - Charlie2a DNA MER1_type -1230 1632 1522 310 278 53 33 chr13 99635984 99636135 -2237034 - MLT1I LTR MaLR -251 158 5 355 224 19 0 chr13 99636211 99636318 -2236851 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 368 285 169 0 chr13 99636401 99636573 -2236596 - Charlie2 DNA MER1_type -2575 287 87 901 199 17 6 chr13 99638599 99638780 -2234389 - MER5A DNA MER1_type -2 187 5 2214 124 0 0 chr13 99639639 99639938 -2233231 + AluSg SINE Alu 1 299 -11 439 263 70 53 chr13 99641456 99641627 -2231542 - MIR SINE MIR -21 241 68 345 228 50 10 chr13 99643278 99643379 -2229790 + GA-rich Low_complexity Low_complexity 1 105 0 2047 100 0 4 chr13 99643861 99644130 -2229039 - AluY SINE Alu -7 304 37 333 301 30 48 chr13 99644142 99644308 -2228861 - L1MC4a LINE L1 -1878 5930 5768 807 203 7 0 chr13 99644321 99644474 -2228695 - L1MD2 LINE L1 -15 6344 6191 1508 206 35 10 chr13 99644490 99644835 -2228334 - L1MD2 LINE L1 -238 6121 5769 2620 90 0 3 chr13 99644877 99645231 -2227938 - L1PB1 LINE L1 0 6151 5799 351 113 0 0 chr13 99645236 99645289 -2227880 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 14229 183 33 10 chr13 99645306 99651012 -2222157 - L1PBa LINE L1 -853 6009 6 209 257 30 89 chr13 99651897 99651998 -2221171 + MIR SINE MIR 158 252 -10 254 276 17 0 chr13 99652522 99652580 -2220589 - MER5A DNA MER1_type -80 109 51 762 175 0 0 chr13 99653566 99654036 -2219133 + (CA)n Simple_repeat Simple_repeat 1 470 0 918 225 270 20 chr13 99654418 99654774 -2218395 + Tigger6b DNA MER2_type 14 458 -1139 1620 226 92 22 chr13 99654837 99655328 -2217841 + Tigger6b DNA MER2_type 1073 1597 0 516 200 0 0 chr13 99655584 99655764 -2217405 + (CA)n Simple_repeat Simple_repeat 1 180 0 186 118 0 0 chr13 99655792 99655826 -2217343 + (CA)n Simple_repeat Simple_repeat 1 34 0 642 253 51 33 chr13 99655972 99656176 -2216993 + MIR SINE MIR 40 248 -14 903 221 43 10 chr13 99656254 99656462 -2216707 - MER20 DNA MER1_type -4 215 1 230 385 0 0 chr13 99656999 99657108 -2216061 + MIR SINE MIR 20 128 -134 528 225 42 0 chr13 99657659 99657779 -2215390 - LTR53 LTR ERVL 0 519 395 970 240 68 11 chr13 99657890 99658256 -2214913 - LTR53 LTR ERVL -132 387 1 195 100 0 0 chr13 99659173 99659203 -2213966 + (T)n Simple_repeat Simple_repeat 1 30 0 2288 103 0 0 chr13 99660203 99660508 -2212661 + AluSx SINE Alu 1 305 0 1364 245 62 2 chr13 99660606 99661010 -2212159 + MLT1C LTR MaLR 1 428 -39 180 0 0 0 chr13 99661426 99661446 -2211723 + (GA)n Simple_repeat Simple_repeat 1 20 0 399 321 84 0 chr13 99663188 99663378 -2209791 + LTR16C LTR ERVL 286 491 0 21 0 0 0 chr13 99665547 99665568 -2207601 + AT_rich Low_complexity Low_complexity 1 21 0 1516 219 22 81 chr13 99668146 99668680 -2204489 - L1MB3 LINE L1 0 6183 5681 1112 192 5 14 chr13 99672571 99672785 -2200384 - MER20 DNA MER1_type -2 217 6 540 125 16 94 chr13 99672887 99673015 -2200154 + MER69A DNA AcHobo 60 177 0 379 216 18 0 chr13 99673446 99673557 -2199612 + (TGGA)n Simple_repeat Simple_repeat 1 113 0 893 193 3 0 chr13 99673570 99674228 -2198941 + (TGGA)n Simple_repeat Simple_repeat 1 660 0 288 152 61 15 chr13 99674229 99674295 -2198874 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 816 171 0 0 chr13 99674300 99674464 -2198705 + (TGGA)n Simple_repeat Simple_repeat 2 165 0 410 324 69 14 chr13 99676159 99676375 -2196794 - MIR SINE MIR -21 241 14 2206 112 17 7 chr13 99677366 99677661 -2195508 - AluSx SINE Alu -6 306 9 500 166 46 53 chr13 99677711 99677862 -2195307 - Charlie5 DNA MER1_type -27 2585 2436 1857 104 4 8 chr13 99677880 99678170 -2194999 - AluSx SINE Alu 0 322 34 403 265 34 0 chr13 99678170 99678287 -2194882 - LTR64 LTR ERVK -41 517 397 1079 236 84 63 chr13 99678318 99678572 -2194597 - LTR64 LTR ERVK -114 444 176 2378 54 0 41 chr13 99678572 99678667 -2194502 - L1PA8 LINE L1 -7 6165 6068 2447 101 0 3 chr13 99678667 99678974 -2194195 - AluSq SINE Alu -7 306 1 2378 54 0 41 chr13 99678974 99679193 -2193976 - L1PA8 LINE L1 -104 6068 5864 1079 236 84 63 chr13 99679193 99679353 -2193816 - LTR64 LTR ERVK -382 176 21 316 136 0 17 chr13 99679372 99679431 -2193738 + L1MC1 LINE L1 6270 6327 -6 357 183 0 0 chr13 99679450 99679521 -2193648 - Charlie5 DNA MER1_type -215 2397 2327 1694 196 0 3 chr13 99679740 99680041 -2193128 + AluJb SINE Alu 1 300 -12 24 0 0 0 chr13 99680328 99680352 -2192817 + AT_rich Low_complexity Low_complexity 1 24 0 314 349 95 0 chr13 99682868 99682994 -2190175 + MIR3 SINE MIR 39 176 -32 275 319 0 0 chr13 99683027 99683099 -2190070 + MIR3 SINE MIR 104 175 -33 1218 97 38 11 chr13 99684882 99685068 -2188101 + AluSp SINE Alu 118 308 -5 238 214 57 57 chr13 99685514 99685584 -2187585 + MLT1A2 LTR MaLR 230 299 -75 216 122 0 0 chr13 99686373 99686414 -2186755 + (TC)n Simple_repeat Simple_repeat 2 42 0 473 336 2 27 chr13 99688159 99688634 -2184535 + (TG)n Simple_repeat Simple_repeat 1 463 0 357 353 7 7 chr13 99688672 99688808 -2184361 + (TG)n Simple_repeat Simple_repeat 2 137 0 447 308 6 19 chr13 99688824 99689362 -2183807 + (TG)n Simple_repeat Simple_repeat 1 530 0 192 125 0 0 chr13 99689960 99689992 -2183177 + (CGGG)n Simple_repeat Simple_repeat 4 35 0 793 229 6 6 chr13 99691899 99692074 -2181095 + L1MB4 LINE L1 6004 6178 -2 1123 199 29 25 chr13 99693123 99693364 -2179805 + AluJo SINE Alu 39 280 -32 360 94 0 0 chr13 99693516 99693569 -2179600 + (GGGGA)n Simple_repeat Simple_repeat 4 56 0 197 305 42 42 chr13 99694148 99694243 -2178926 + MIR SINE MIR 66 160 -102 1293 233 88 9 chr13 99694672 99695102 -2178067 - MLT1C LTR MaLR -1 466 3 958 178 43 0 chr13 99695880 99696111 -2177058 + L1MA4A LINE L1 2952 3192 -2954 403 113 0 0 chr13 99696119 99696190 -2176979 + L1MA9 LINE L1 6217 6287 -25 * 1988 175 68 30 chr13 99696186 99696251 -2176918 + L1MA4A LINE L1 5426 5487 -847 2056 125 3 0 chr13 99696251 99696548 -2176621 + AluSx SINE Alu 1 298 -14 1988 175 68 30 chr13 99696548 99697310 -2175859 + L1MA4A LINE L1 5487 6305 -29 535 224 8 0 chr13 99697384 99697509 -2175660 + L1MA10 LINE L1 6180 6305 -29 507 192 10 0 chr13 99697545 99697649 -2175520 - L1 LINE L1 -1088 5058 4954 360 229 133 0 chr13 99698023 99698128 -2175041 - MIR SINE MIR -71 191 73 23 33 0 0 chr13 99699446 99699476 -2173693 + AT_rich Low_complexity Low_complexity 1 30 0 614 286 68 0 chr13 99699693 99699885 -2173284 + MIR SINE MIR 46 250 -12 1462 108 10 0 chr13 99700271 99700475 -2172694 + AluSg/x SINE Alu 86 291 -21 634 181 9 9 chr13 99701627 99701743 -2171426 + FLAM_A SINE Alu 8 123 -19 2609 196 107 58 chr13 99701847 99702218 -2170951 + MSTD-int LTR MaLR 1044 1509 -226 1718 175 7 19 chr13 99702218 99702527 -2170642 - AluJo SINE Alu -7 305 1 2609 196 107 58 chr13 99702527 99702766 -2170403 + MSTD-int LTR MaLR 1509 1735 0 2073 189 24 5 chr13 99702766 99703147 -2170022 + MSTD LTR MaLR 1 388 -8 1854 113 113 35 chr13 99703246 99703592 -2169577 + THE1C LTR MaLR 1 373 -2 9790 121 60 11 chr13 99703592 99705095 -2168074 + THE1C-int LTR MaLR 2 1580 0 1713 154 69 36 chr13 99705095 99705458 -2167711 + THE1C LTR MaLR 1 375 0 1415 208 5 105 chr13 99706222 99706649 -2166520 - MLT1B LTR MaLR -6 384 1 217 359 47 47 chr13 99707049 99707219 -2165950 + L2 LINE L2 3096 3265 -7 204 40 0 0 chr13 99707770 99707795 -2165374 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 306 344 51 13 chr13 99707875 99708032 -2165137 + MIR SINE MIR 30 192 -70 295 241 106 53 chr13 99712524 99712731 -2160438 + MLT1L LTR MaLR 379 596 -19 774 99 53 0 chr13 99713080 99713251 -2159918 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 25 0 0 0 chr13 99714565 99714590 -2158579 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr13 99714805 99714828 -2158341 + (A)n Simple_repeat Simple_repeat 1 23 0 3760 256 99 23 chr13 99714829 99715647 -2157522 - Charlie1a DNA MER1_type -1317 1444 487 2138 112 0 3 chr13 99715647 99715951 -2157218 - AluSx SINE Alu -9 303 1 3760 256 99 23 chr13 99715951 99716445 -2156724 - Charlie1a DNA MER1_type -2274 487 32 574 243 63 1 chr13 99718292 99718436 -2154733 + MIR SINE MIR 37 187 -62 457 264 75 49 chr13 99719102 99719367 -2153802 - L1MC5 LINE L1 -48 7913 7642 3977 192 43 28 chr13 99719367 99720249 -2152920 + L1MB3 LINE L1 5086 5953 -230 1834 143 16 3 chr13 99720249 99720556 -2152613 + AluSq SINE Alu 1 311 -2 3977 192 43 28 chr13 99720556 99720590 -2152579 + L1MB3 LINE L1 5953 5985 -198 207 0 0 0 chr13 99720590 99720613 -2152556 + (AGGGGG)n Simple_repeat Simple_repeat 4 26 0 3977 192 43 28 chr13 99720613 99720765 -2152404 + L1MB3 LINE L1 5985 6176 -7 280 269 154 44 chr13 99720793 99721020 -2152149 - L1MC5 LINE L1 -316 7645 7394 609 244 38 0 chr13 99721070 99721230 -2151939 + MER3 DNA MER1_type 5 123 -86 237 272 160 0 chr13 99721472 99721597 -2151572 - MIR SINE MIR -116 146 2 260 308 0 0 chr13 99722253 99722351 -2150818 + MIR SINE MIR 53 145 -63 577 195 32 8 chr13 99722669 99722792 -2150377 + MLT1B LTR MaLR 1 126 -264 2982 227 81 38 chr13 99722798 99723179 -2149990 + L1MA8 LINE L1 5344 5707 -584 1348 234 19 27 chr13 99723179 99723547 -2149622 + MLT1A1 LTR MaLR 1 365 0 2982 227 81 38 chr13 99723547 99724064 -2149105 + L1MA8 LINE L1 5707 6281 -10 939 240 60 11 chr13 99724081 99724348 -2148821 + MLT1B LTR MaLR 99 378 -12 201 238 0 48 chr13 99724978 99725019 -2148150 + CT-rich Low_complexity Low_complexity 3 42 -20 1712 93 36 8 chr13 99725019 99725266 -2147903 - AluSg SINE Alu -56 254 1 201 238 0 48 chr13 99725266 99725287 -2147882 + CT-rich Low_complexity Low_complexity 42 62 0 2069 114 0 3 chr13 99725308 99725606 -2147563 + AluSg SINE Alu 1 297 -13 2436 199 40 18 chr13 99727031 99727710 -2145459 - Tigger7 DNA MER2_type -8 2579 2 1334 233 48 38 chr13 99728116 99728536 -2144633 - L1MA9 LINE L1 -202 6110 5687 237 271 35 12 chr13 99729613 99729698 -2143471 - L1MA9 LINE L1 -587 5725 5639 7001 230 48 52 chr13 99729783 99730485 -2142684 - L1MA9 LINE L1 -669 5643 4940 267 31 0 0 chr13 99730485 99730517 -2142652 + (TG)n Simple_repeat Simple_repeat 1 32 0 7001 230 48 52 chr13 99730517 99730737 -2142432 - L1MA9 LINE L1 -1372 4940 4721 1250 111 0 0 chr13 99730737 99730917 -2142252 + AluY SINE Alu 128 307 -4 7001 230 48 52 chr13 99730917 99732855 -2140314 - L1MA9 LINE L1 -1591 4721 2752 1015 215 156 50 chr13 99733115 99733508 -2139661 + L1MD2 LINE L1 5915 7995 0 789 263 25 38 chr13 99733697 99734013 -2139156 - L1ME2 LINE L1 -129 6035 5724 14377 129 16 16 chr13 99734086 99736477 -2136692 + Tigger1 DNA MER2_type 26 2418 0 651 220 141 82 chr13 99736645 99736944 -2136225 - L1MC4a LINE L1 -1758 6050 5719 1994 103 36 98 chr13 99736944 99737026 -2136143 - THE1B LTR MaLR 0 364 278 2331 119 0 0 chr13 99737026 99737337 -2135832 - AluY SINE Alu 0 311 1 1994 103 36 98 chr13 99737337 99737642 -2135527 - THE1B LTR MaLR -86 278 1 651 220 141 82 chr13 99737642 99737746 -2135423 - L1MC4a LINE L1 -2089 5719 5623 239 283 113 19 chr13 99737786 99737892 -2135277 - L1MC4a LINE L1 -2260 5548 5433 292 247 65 19 chr13 99737894 99738048 -2135121 - L1MC4a LINE L1 -747 5399 5239 235 361 62 16 chr13 99738456 99738761 -2134408 - L1MC4a LINE L1 -1441 4705 4387 322 268 73 111 chr13 99739178 99739439 -2133730 + L1MC4 LINE L1 7791 8041 -1 408 335 68 0 chr13 99745046 99745222 -2127947 - MIR SINE MIR -11 251 64 248 284 29 20 chr13 99745510 99745612 -2127557 + MIR SINE MIR 46 148 -114 185 323 115 0 chr13 99746715 99746811 -2126358 + L2 LINE L2 3184 3290 -23 23 112 0 0 chr13 99746816 99746923 -2126246 + AT_rich Low_complexity Low_complexity 1 107 0 244 246 0 0 chr13 99746925 99746982 -2126187 + (TAAA)n Simple_repeat Simple_repeat 4 60 0 225 0 0 0 chr13 99748820 99748845 -2124324 + (TG)n Simple_repeat Simple_repeat 1 25 0 213 276 122 81 chr13 99749392 99749515 -2123654 - MIR3 SINE MIR -12 196 69 334 258 75 8 chr13 99749658 99749778 -2123391 - MIR SINE MIR -112 150 23 326 269 199 21 chr13 99750309 99750591 -2122578 + LTR33 LTR ERVL 23 354 -167 433 265 66 31 chr13 99750948 99751144 -2122025 + LTR33 LTR ERVL 301 503 -18 340 281 206 16 chr13 99752575 99752949 -2120220 + L2 LINE L2 1751 2195 -1119 571 248 8 0 chr13 99753710 99753843 -2119326 - MER3 DNA MER1_type -60 149 16 1235 224 69 35 chr13 99755483 99755934 -2117235 + MLT1C LTR MaLR 1 466 -1 339 253 11 0 chr13 99756313 99756400 -2116769 + MER96B DNA MER1_type? 330 417 0 481 305 52 44 chr13 99756492 99757029 -2116140 - L1MEd LINE L1 -4862 1257 804 189 297 27 0 chr13 99758112 99758186 -2114983 - MER5A DNA MER1_type -87 102 27 475 263 0 11 chr13 99758582 99758757 -2114412 + (TG)n Simple_repeat Simple_repeat 1 173 0 243 0 0 0 chr13 99758851 99758878 -2114291 + (GA)n Simple_repeat Simple_repeat 2 28 0 1076 276 83 62 chr13 99759851 99760816 -2112353 - L1ME LINE L1 -4667 2158 1014 521 316 59 26 chr13 99761260 99761532 -2111637 - L1ME LINE L1 -6024 801 521 277 300 139 58 chr13 99761601 99761961 -2111208 - L2 LINE L2 -7 3306 2918 222 118 0 0 chr13 99762981 99763015 -2110154 + (TG)n Simple_repeat Simple_repeat 1 34 0 321 384 0 8 chr13 99763654 99763779 -2109390 - MIR3 SINE MIR -1 207 84 198 0 0 0 chr13 99763879 99763901 -2109268 + (A)n Simple_repeat Simple_repeat 1 22 0 367 274 11 11 chr13 99764130 99764225 -2108944 + L2 LINE L2 3163 3257 -15 309 100 0 0 chr13 99764229 99764279 -2108890 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 374 299 94 21 chr13 99764794 99764975 -2108194 - MIR SINE MIR -33 229 38 269 228 16 63 chr13 99769959 99770086 -2103083 + G-rich Low_complexity Low_complexity 6 126 0 255 324 0 10 chr13 99770342 99770444 -2102725 + (CGTG)n Simple_repeat Simple_repeat 1 101 0 180 0 0 0 chr13 99771248 99771268 -2101901 + (A)n Simple_repeat Simple_repeat 1 20 0 232 255 20 0 chr13 99775933 99775984 -2097185 + (CACG)n Simple_repeat Simple_repeat 4 55 0 230 236 28 14 chr13 99776737 99776809 -2096360 + C-rich Low_complexity Low_complexity 2 74 0 224 187 27 53 chr13 99776852 99776927 -2096242 + CT-rich Low_complexity Low_complexity 4 76 0 189 0 0 0 chr13 99780272 99780293 -2092876 + (CCG)n Simple_repeat Simple_repeat 3 23 0 245 337 0 0 chr13 99780325 99780408 -2092761 + C-rich Low_complexity Low_complexity 1 83 0 26 0 0 0 chr13 99780529 99780555 -2092614 + GC_rich Low_complexity Low_complexity 1 26 0 303 85 0 0 chr13 99781361 99781408 -2091761 + (CGGGGG)n Simple_repeat Simple_repeat 4 50 0 24 67 0 0 chr13 99781688 99781733 -2091436 + GC_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr13 99781797 99781818 -2091351 + GC_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr13 99781861 99781889 -2091280 + (CGG)n Simple_repeat Simple_repeat 1 28 0 227 253 38 0 chr13 99781922 99782001 -2091168 + (CG)n Simple_repeat Simple_repeat 2 83 0 189 74 0 0 chr13 99782113 99782140 -2091029 + (CCG)n Simple_repeat Simple_repeat 3 29 0 228 86 0 0 chr13 99782160 99782195 -2090974 + (CGG)n Simple_repeat Simple_repeat 1 35 0 22 80 0 0 chr13 99782320 99782370 -2090799 + GC_rich Low_complexity Low_complexity 1 50 0 33 25 0 0 chr13 99782497 99782537 -2090632 + GC_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr13 99783974 99784000 -2089169 + AT_rich Low_complexity Low_complexity 1 26 0 227 100 0 25 chr13 99785510 99785550 -2087619 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 219 103 35 35 chr13 99786286 99786344 -2086825 + CT-rich Low_complexity Low_complexity 1 58 0 263 260 153 4 chr13 99789066 99789209 -2083960 + MIR SINE MIR 70 242 -20 264 307 113 78 chr13 99789451 99789682 -2083487 - L2 LINE L2 -25 3247 3009 216 350 49 38 chr13 99789881 99790064 -2083105 - MER5A DNA MER1_type 0 189 5 32 67 0 0 chr13 99790955 99791015 -2082154 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr13 99791210 99791233 -2081936 + AT_rich Low_complexity Low_complexity 1 23 0 288 323 16 31 chr13 99791598 99791725 -2081444 + L2 LINE L2 3140 3264 -8 240 131 81 20 chr13 99791855 99791954 -2081215 + (TTGTG)n Simple_repeat Simple_repeat 5 109 0 735 118 26 51 chr13 99791965 99792268 -2080901 + (TTGTG)n Simple_repeat Simple_repeat 1 295 0 1158 255 48 24 chr13 99792940 99793359 -2079810 + MER119 DNA MER1_type 132 560 -23 23 33 0 0 chr13 99793549 99793579 -2079590 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr13 99793675 99793696 -2079473 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 99794266 99794294 -2078875 + AT_rich Low_complexity Low_complexity 1 28 0 914 176 39 0 chr13 99794378 99794531 -2078638 - AluJ SINE Alu -24 288 130 202 28 28 28 chr13 99794555 99794591 -2078578 + (TTTG)n Simple_repeat Simple_repeat 3 38 0 862 144 8 0 chr13 99794593 99794725 -2078444 - AluJ SINE Alu -169 133 1 1879 194 71 11 chr13 99795404 99795843 -2077326 - MLT1C LTR MaLR 0 467 3 371 299 108 12 chr13 99796282 99796449 -2076720 - MIR SINE MIR -46 216 34 826 274 66 66 chr13 99796467 99797101 -2076068 - HAL1 LINE L1 -21 2486 1853 273 209 0 15 chr13 99797212 99797279 -2075890 - HAL1 LINE L1 -889 1618 1553 1152 256 40 25 chr13 99797334 99797729 -2075440 - L1ME1 LINE L1 -6 6229 5829 365 291 17 0 chr13 99797736 99797853 -2075316 - MER3 DNA MER1_type -84 125 7 2572 203 28 9 chr13 99797856 99798496 -2074673 - L1ME1 LINE L1 -1103 5112 4461 467 143 33 0 chr13 99798506 99798597 -2074572 - L1ME1 LINE L1 -1923 4292 4199 3491 96 16 18 chr13 99798597 99799107 -2074062 - MER1A DNA MER1_type 0 529 21 1148 254 79 30 chr13 99799130 99799241 -2073928 - L1ME1 LINE L1 -979 1597 1493 2722 11 0 0 chr13 99799241 99799527 -2073642 + AluYa5 SINE Alu 13 298 -13 1148 254 79 30 chr13 99799527 99800195 -2072974 - L1ME1 LINE L1 -1083 1493 857 326 284 171 83 chr13 99800561 99800888 -2072281 - HAL1 LINE L1 -2151 356 1 2103 118 7 0 chr13 99803500 99803796 -2069373 + AluSq SINE Alu 1 298 -15 600 102 0 0 chr13 99803796 99803894 -2069275 + (GGAA)n Simple_repeat Simple_repeat 1 98 0 370 253 29 118 chr13 99804034 99804204 -2068965 + MER5A DNA MER1_type 35 189 0 2146 131 0 19 chr13 99804379 99804692 -2068477 + AluSx SINE Alu 1 307 -5 431 183 154 0 chr13 99804733 99804837 -2068332 + MER3 DNA MER1_type 90 209 0 409 212 12 0 chr13 99804837 99804879 -2068290 - MER3 DNA MER1_type -162 47 5 814 306 98 26 chr13 99805107 99806101 -2067068 - L1ME1 LINE L1 -5185 934 37 1128 231 85 32 chr13 99806437 99806779 -2066390 + MER119 DNA MER1_type 15 374 -209 388 242 77 50 chr13 99806795 99806977 -2066192 - L1MC5 LINE L1 -469 7492 7306 726 249 13 13 chr13 99807017 99807246 -2065923 - L1MC5 LINE L1 -739 7222 6994 489 169 0 0 chr13 99807246 99807329 -2065840 + Charlie4 DNA MER1_type 1855 1937 -24 406 306 106 13 chr13 99807643 99807878 -2065291 + MIR SINE MIR 1 257 -5 251 262 9 0 chr13 99808027 99808134 -2065035 + CT-rich Low_complexity Low_complexity 2 109 0 234 260 106 49 chr13 99808747 99808828 -2064341 + MIR SINE MIR 109 201 -61 2302 114 0 3 chr13 99808828 99809135 -2064034 - AluSg SINE Alu -4 306 1 234 260 106 49 chr13 99809135 99809176 -2063993 + MIR SINE MIR 201 238 -24 210 232 116 0 chr13 99809316 99809385 -2063784 + MIR SINE MIR 15 91 -171 24 67 0 0 chr13 99812215 99812260 -2060909 + AT_rich Low_complexity Low_complexity 1 45 0 606 230 23 17 chr13 99812943 99813117 -2060052 + MER104 DNA MER2_type 3 177 -3 189 0 0 0 chr13 99813462 99813483 -2059686 + (A)n Simple_repeat Simple_repeat 1 21 0 2441 62 7 20 chr13 99813792 99814096 -2059073 - AluY SINE Alu -11 300 1 180 306 20 0 chr13 99815328 99815377 -2057792 + MIR SINE MIR 82 131 -77 225 243 81 90 chr13 99816030 99816141 -2057028 - L2 LINE L2 -3 3310 3201 197 81 0 27 chr13 99816921 99816958 -2056211 + (CGGGGG)n Simple_repeat Simple_repeat 2 37 0 23 78 0 0 chr13 99818265 99818316 -2054853 + GC_rich Low_complexity Low_complexity 1 51 0 218 260 13 26 chr13 99821528 99821605 -2051564 + L2 LINE L2 3235 3310 -3 222 37 0 0 chr13 99822801 99822828 -2050341 + (CA)n Simple_repeat Simple_repeat 1 27 0 905 273 28 25 chr13 99823172 99823491 -2049678 + MER33 DNA MER1_type 2 321 -3 203 184 97 48 chr13 99826702 99826805 -2046364 + (CACCC)n Simple_repeat Simple_repeat 5 112 0 356 343 145 44 chr13 99827298 99827636 -2045533 - L2 LINE L2 -4 3268 2897 364 308 191 23 chr13 99828353 99828788 -2044381 + L2 LINE L2 2804 3311 -2 200 308 119 21 chr13 99828772 99829058 -2044111 - L2 LINE L2 -1903 1411 1098 * 302 175 32 0 chr13 99830572 99830635 -2042534 + MLT1C LTR MaLR 6 70 -320 291 313 0 0 chr13 99830770 99830850 -2042319 + GA-rich Low_complexity Low_complexity 4 83 0 630 311 47 3 chr13 99830946 99831267 -2041902 + MLT1C LTR MaLR 126 460 -7 239 293 61 0 chr13 99833828 99833910 -2039259 + L2 LINE L2 3197 3283 -30 528 266 0 8 chr13 99833920 99834228 -2038941 + GA-rich Low_complexity Low_complexity 1 305 0 23 0 0 0 chr13 99834484 99834507 -2038662 + AT_rich Low_complexity Low_complexity 1 23 0 2629 67 3 0 chr13 99835259 99835571 -2037598 - AluSp SINE Alu 0 313 1 6884 252 36 51 chr13 99835762 99835778 -2037391 - L1M2 LINE L1 -716 5450 5435 2071 100 0 94 chr13 99835778 99836107 -2037062 + AluSx SINE Alu 1 298 -14 6884 252 36 51 chr13 99836107 99836208 -2036961 - L1M2 LINE L1 -731 5435 5334 2512 60 0 3 chr13 99836208 99836509 -2036660 + AluY SINE Alu 1 300 -11 6884 252 36 51 chr13 99836509 99839175 -2033994 - L1M2 LINE L1 -832 5334 2695 275 183 17 17 chr13 99839629 99839689 -2033480 - L1ME LINE L1 -5682 388 329 2055 153 10 0 chr13 99839817 99840124 -2033045 + AluSq SINE Alu 1 310 -3 1384 205 48 8 chr13 99840402 99840753 -2032416 + MLT1A1 LTR MaLR 1 365 0 901 285 118 28 chr13 99840978 99841444 -2031725 - L1MC4a LINE L1 -962 6846 6339 265 259 0 0 chr13 99841592 99841650 -2031519 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 116 0 0 chr13 99841652 99841695 -2031474 + MER4-int LTR ERV1 1114 1156 -5442 314 240 33 25 chr13 99842676 99842797 -2030372 + CT-rich Low_complexity Low_complexity 1 122 0 3341 217 26 11 chr13 99842965 99843195 -2029974 + L1MA7 LINE L1 5543 5768 -523 2236 116 0 0 chr13 99843195 99843497 -2029672 + AluY SINE Alu 1 302 -9 3341 217 26 11 chr13 99843497 99844003 -2029166 + L1MA7 LINE L1 5768 6290 -1 869 177 43 0 chr13 99844197 99844383 -2028786 + L1MA4A LINE L1 6109 6302 -1 262 327 74 12 chr13 99845249 99845411 -2027758 + L2 LINE L2 2633 2804 -510 688 271 63 32 chr13 99848889 99849051 -2024118 + MER5C DNA MER1_type 14 190 -134 2280 105 3 0 chr13 99849051 99849346 -2023823 - AluSq SINE Alu -16 297 2 688 271 63 32 chr13 99849346 99849467 -2023702 + MER5C DNA MER1_type 190 306 -18 248 238 16 16 chr13 99850477 99850540 -2022629 + CT-rich Low_complexity Low_complexity 1 63 0 704 184 7 0 chr13 99850551 99850698 -2022471 + CT-rich Low_complexity Low_complexity 4 151 0 348 83 0 0 chr13 99850809 99850857 -2022312 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 306 335 154 31 chr13 99850912 99851327 -2021842 + L3 LINE CR1 1102 1567 -10 1914 141 3 7 chr13 99851736 99852033 -2021136 + AluSx SINE Alu 1 296 -16 203 250 0 0 chr13 99852579 99852627 -2020542 - MIR SINE MIR -67 141 94 2265 251 97 72 chr13 99853931 99855144 -2018025 - L1MC5 LINE L1 -32 7929 6686 396 169 0 0 chr13 99855148 99855225 -2017944 + (CA)n Simple_repeat Simple_repeat 2 78 0 229 248 0 29 chr13 99855897 99856034 -2017135 + (CCCA)n Simple_repeat Simple_repeat 1 133 0 223 240 0 21 chr13 99856062 99856158 -2017011 + (CCCA)n Simple_repeat Simple_repeat 1 94 0 196 356 55 0 chr13 99858792 99858865 -2014304 + MIR SINE MIR 180 256 -6 263 172 78 0 chr13 99860849 99860913 -2012256 + MLT1A2 LTR MaLR 1 69 -305 1291 213 18 41 chr13 99863635 99863973 -2009196 + MLT1A2 LTR MaLR 45 374 0 563 160 7 33 chr13 99864634 99864784 -2008385 + (CA)n Simple_repeat Simple_repeat 2 147 0 209 224 0 17 chr13 99864796 99864854 -2008315 + (CA)n Simple_repeat Simple_repeat 1 57 0 457 216 5 38 chr13 99864868 99865053 -2008116 + (CA)n Simple_repeat Simple_repeat 1 179 0 317 191 0 48 chr13 99865069 99865257 -2007912 + (CA)n Simple_repeat Simple_repeat 1 179 0 215 273 23 34 chr13 99865292 99865380 -2007789 - MIR SINE MIR -84 178 92 984 210 0 0 chr13 99866903 99867079 -2006090 - AluJb SINE Alu -15 297 122 368 340 44 6 chr13 99867800 99867959 -2005210 + MIR SINE MIR 29 193 -69 310 282 19 19 chr13 99868528 99868631 -2004538 + MER5B DNA MER1_type 5 107 -71 606 317 90 26 chr13 99870176 99870633 -2002536 - MLT1K LTR MaLR -11 577 92 754 310 73 44 chr13 99871532 99872048 -2001121 - L1MEc LINE L1 -3645 2570 2077 207 0 0 0 chr13 99876301 99876324 -1996845 + (T)n Simple_repeat Simple_repeat 1 23 0 671 217 148 57 chr13 99877307 99877537 -1995632 - LTR8A LTR ERV1 0 727 477 1515 222 42 59 chr13 99878698 99879153 -1994016 - LTR8A LTR ERV1 -247 480 34 350 145 16 0 chr13 99879786 99879848 -1993321 + CT-rich Low_complexity Low_complexity 3 65 0 227 235 0 20 chr13 99881531 99881582 -1991587 + (CA)n Simple_repeat Simple_repeat 1 50 0 1480 226 42 59 chr13 99883934 99884389 -1988780 + LTR8A LTR ERV1 34 480 -247 670 228 146 56 chr13 99885168 99885401 -1987768 + LTR8A LTR ERV1 474 727 0 342 262 159 0 chr13 99887778 99887904 -1985265 + MIR SINE MIR 117 262 0 230 200 0 36 chr13 99888573 99888628 -1984541 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 261 383 0 0 chr13 99889045 99889165 -1984004 - MIR SINE MIR -96 166 47 215 120 0 20 chr13 99891840 99891890 -1981279 + (CAGGC)n Simple_repeat Simple_repeat 1 49 0 255 306 37 30 chr13 99892112 99892246 -1980923 - L2 LINE L2 -200 3072 2938 1620 211 77 16 chr13 99892683 99893123 -1980046 - MLT1C LTR MaLR 0 467 1 958 187 82 5 chr13 99895688 99895907 -1977262 + MLT1C LTR MaLR 1 236 -231 508 285 104 23 chr13 99895989 99896249 -1976920 + MLT1C LTR MaLR 187 467 0 693 231 25 12 chr13 99898916 99899076 -1974093 - MIR SINE MIR -38 224 63 333 299 15 36 chr13 99899647 99899784 -1973385 + L2 LINE L2 3137 3270 -2 21 0 0 0 chr13 99900432 99900453 -1972716 + AT_rich Low_complexity Low_complexity 1 21 0 1530 216 64 0 chr13 99904177 99904519 -1968650 - MLT1B LTR MaLR -18 372 9 254 93 0 23 chr13 99904750 99904793 -1968376 + (GGAGAA)n Simple_repeat Simple_repeat 4 45 0 565 272 113 0 chr13 99905399 99905594 -1967575 - MIR SINE MIR -23 239 23 192 228 63 51 chr13 99905836 99905915 -1967254 + MIR SINE MIR 57 136 -126 229 262 214 29 chr13 99905918 99906021 -1967148 + MLT1G LTR MaLR 1 122 -473 663 255 139 69 chr13 99906166 99906470 -1966699 + MLT1G LTR MaLR 147 507 -52 797 200 23 11 chr13 99906631 99906806 -1966363 + MLT1A1 LTR MaLR 1 177 -188 909 205 15 15 chr13 99907221 99907416 -1965753 + MLT1A1 LTR MaLR 171 365 0 282 281 108 61 chr13 99908157 99908388 -1964781 - MLT2C1 LTR ERVL -84 313 72 471 295 83 5 chr13 99908440 99908633 -1964536 - ERVL-C1 LTR ERVL -7 5757 5550 4140 172 39 5 chr13 99908653 99909399 -1963770 - ERVL-C1 LTR ERVL -716 5048 4278 566 327 51 56 chr13 99909751 99910164 -1963005 + MLT1L LTR MaLR 6 416 -199 2140 101 128 11 chr13 99910519 99910887 -1962282 + MSTA LTR MaLR 1 411 -17 1339 216 89 50 chr13 99911022 99911462 -1961707 - MLT1C LTR MaLR -5 462 6 361 347 34 7 chr13 99911470 99911617 -1961552 - L1ME LINE L1 -574 5590 5440 2402 131 9 2 chr13 99911617 99912050 -1961119 + MER75 DNA T2_type 1 514 0 1723 258 46 19 chr13 99912111 99912984 -1960185 - L1ME LINE L1 -456 5689 4799 467 275 12 0 chr13 99913286 99913446 -1959723 - L1ME LINE L1 -1370 4759 4598 1064 271 106 47 chr13 99913461 99914226 -1958943 - L1ME LINE L1 -4884 1235 426 215 259 0 19 chr13 99914629 99914683 -1958486 - MIR3 SINE MIR -43 165 113 231 114 0 0 chr13 99916253 99916288 -1956881 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 791 175 6 20 chr13 99916293 99916622 -1956547 + CT-rich Low_complexity Low_complexity 1 324 0 197 224 17 0 chr13 99916641 99916699 -1956470 + CT-rich Low_complexity Low_complexity 4 62 0 711 180 6 12 chr13 99916716 99916883 -1956286 + CT-rich Low_complexity Low_complexity 3 168 0 331 152 25 0 chr13 99916911 99916990 -1956179 + CT-rich Low_complexity Low_complexity 4 84 0 252 0 0 0 chr13 99918242 99918270 -1954899 + (TAAAA)n Simple_repeat Simple_repeat 4 31 0 243 88 0 0 chr13 99918423 99918457 -1954712 + (CCCCAG)n Simple_repeat Simple_repeat 1 34 0 1255 257 19 50 chr13 99918991 99919368 -1953801 - MLT1A1 LTR MaLR 0 365 1 202 260 146 0 chr13 99920442 99920538 -1952631 + MIR3 SINE MIR 97 206 -2 260 217 111 6 chr13 99921751 99921845 -1951324 + MIR SINE MIR 41 149 -62 253 192 0 0 chr13 99924346 99924398 -1948771 - MER4-int LTR ERV1 -5436 1162 1111 241 237 40 26 chr13 99924398 99924474 -1948695 + (CATA)n Simple_repeat Simple_repeat 4 80 0 180 254 0 0 chr13 99924474 99924533 -1948636 + (CA)n Simple_repeat Simple_repeat 2 60 0 414 338 7 7 chr13 99924563 99924711 -1948458 + (CA)n Simple_repeat Simple_repeat 2 149 0 27 0 0 0 chr13 99927716 99927743 -1945426 + AT_rich Low_complexity Low_complexity 1 27 0 269 231 31 0 chr13 99928819 99928884 -1944285 + MLT1C LTR MaLR 8 74 -316 874 257 14 9 chr13 99928887 99929180 -1943989 + MER2 DNA MER2_type 1 338 -7 820 222 79 0 chr13 99929185 99929401 -1943768 + MLT1C LTR MaLR 76 308 -159 370 257 101 14 chr13 99929512 99929660 -1943509 + MLT1C LTR MaLR 292 452 -15 853 232 116 5 chr13 99929864 99930088 -1943081 - MER66A LTR ERV1 -228 250 2 271 236 87 19 chr13 99930418 99930579 -1942590 + (CGGG)n Simple_repeat Simple_repeat 4 175 0 443 102 41 137 chr13 99930592 99930789 -1942380 + (CAGG)n Simple_repeat Simple_repeat 3 180 0 278 256 92 0 chr13 99930756 99930920 -1942249 + (CGGG)n Simple_repeat Simple_repeat 2 180 0 * 841 186 83 0 chr13 99930943 99931136 -1942033 - MER31A LTR ERV1 -266 219 11 515 245 47 47 chr13 99931499 99931732 -1941437 - L1MC5 LINE L1 -19 7942 7710 235 177 0 127 chr13 99931827 99931906 -1941263 - L1MC4a LINE L1 -1446 6362 6294 283 268 254 0 chr13 99932586 99932724 -1940445 - L1MC4a LINE L1 -2212 5596 5424 1502 124 4 0 chr13 99933079 99933305 -1939864 - L1MA6 LINE L1 0 6300 6074 632 183 16 0 chr13 99933305 99933431 -1939738 + L1MA5A LINE L1 5760 5887 -410 185 321 37 0 chr13 99934762 99934843 -1938326 - MIR SINE MIR -166 96 13 188 191 0 74 chr13 99935235 99935397 -1937772 + G-rich Low_complexity Low_complexity 3 152 0 442 302 6 22 chr13 99935401 99935583 -1937586 + GA-rich Low_complexity Low_complexity 2 180 0 192 204 15 48 chr13 99935602 99935787 -1937382 + GA-rich Low_complexity Low_complexity 1 178 0 246 247 13 6 chr13 99935845 99936003 -1937166 + GA-rich Low_complexity Low_complexity 3 161 0 246 215 0 63 chr13 99936018 99936097 -1937072 + G-rich Low_complexity Low_complexity 3 76 0 359 310 3 16 chr13 99938082 99938391 -1934778 + (TG)n Simple_repeat Simple_repeat 1 304 0 788 144 17 17 chr13 99939405 99939579 -1933590 + GA-rich Low_complexity Low_complexity 2 175 0 2920 159 18 28 chr13 99942147 99942758 -1930411 + pTR5 LTR ERV1 741 1345 -1093 3801 139 102 28 chr13 99942773 99943538 -1929631 + LTR12 LTR ERV1 5 826 0 944 235 29 33 chr13 99943974 99944280 -1928889 + MER69 DNA AcHobo 1908 2212 -314 2273 118 0 0 chr13 99944560 99944865 -1928304 - AluSx SINE Alu -1 311 7 428 235 0 8 chr13 99945234 99945366 -1927803 + (TG)n Simple_repeat Simple_repeat 1 131 0 306 236 24 0 chr13 99945447 99945570 -1927599 + (TG)n Simple_repeat Simple_repeat 1 126 0 218 54 0 27 chr13 99945595 99945632 -1927537 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1466 169 3 58 chr13 99945640 99945935 -1927234 - AluJb SINE Alu -33 279 1 426 345 7 0 chr13 99946362 99946501 -1926668 + MIR SINE MIR 117 256 -6 6865 166 60 16 chr13 99948069 99948610 -1924559 - Ricksha DNA DNA -7 3239 2724 267 54 0 0 chr13 99948610 99948647 -1924522 + (CA)n Simple_repeat Simple_repeat 2 38 0 6865 166 60 16 chr13 99948647 99949238 -1923931 - Ricksha DNA DNA -522 2724 2033 2621 61 0 3 chr13 99949238 99949550 -1923619 - AluY SINE Alu 0 311 1 6865 166 60 16 chr13 99949550 99949775 -1923394 - Ricksha DNA DNA -1213 2033 1820 529 207 256 10 chr13 99949765 99949968 -1923201 - Ricksha DNA DNA -933 321 69 * 499 401 98 13 chr13 99951791 99952405 -1920764 + L3 LINE CR1 700 1365 -212 857 279 59 23 chr13 99952984 99953576 -1919593 - L1ME LINE L1 -459 5703 5084 523 304 99 8 chr13 99954011 99954376 -1918793 + MLT2E LTR ERVL 230 627 -1 342 289 139 16 chr13 99954484 99954671 -1918498 - L1ME LINE L1 -1537 4609 4400 276 266 13 0 chr13 99954841 99954920 -1918249 - MLT1I LTR MaLR -237 172 93 2136 167 71 0 chr13 99955402 99955798 -1917371 + MSTB LTR MaLR 1 424 -2 1050 257 27 68 chr13 99956494 99956981 -1916188 + MLT1C LTR MaLR 1 467 0 359 286 97 13 chr13 99957196 99957350 -1915819 - MLT1I LTR MaLR -6 403 237 242 313 50 0 chr13 99957422 99957521 -1915648 - MLT1I LTR MaLR -301 108 5 778 334 41 32 chr13 99957532 99958193 -1914976 - L1ME LINE L1 -1735 4411 3745 309 245 78 29 chr13 99958449 99958551 -1914618 + MIR3 SINE MIR 92 198 -10 1820 142 68 6 chr13 99958694 99959025 -1914144 - MSTA LTR MaLR 0 428 77 703 101 73 0 chr13 99959025 99959134 -1914035 + MER51B LTR ERV1 1 117 -260 6338 168 142 55 chr13 99959134 99960693 -1912476 + pTR5 LTR ERV1 743 2438 0 425 167 0 0 chr13 99960699 99960771 -1912398 - MSTA LTR MaLR -352 76 5 517 204 29 6 chr13 99962708 99962880 -1910289 + GA-rich Low_complexity Low_complexity 4 179 0 435 208 281 5 chr13 99963219 99963440 -1909729 - MER5C DNA MER1_type 0 324 43 1136 246 159 8 chr13 99963584 99963937 -1909232 + MER119 DNA MER1_type 134 539 -44 830 263 90 42 chr13 99967758 99968115 -1905054 - MLT2C1 LTR ERVL -1 396 23 203 273 0 0 chr13 99969383 99969427 -1903742 + CT-rich Low_complexity Low_complexity 4 47 0 424 284 41 35 chr13 99970415 99970584 -1902585 + MIR SINE MIR 61 230 -32 204 322 0 23 chr13 99971231 99971318 -1901851 - MIR3 SINE MIR -11 197 113 310 346 0 25 chr13 99971388 99971547 -1901622 + (CA)n Simple_repeat Simple_repeat 1 155 0 24 32 0 0 chr13 99973178 99973209 -1899960 + AT_rich Low_complexity Low_complexity 1 31 0 526 348 52 54 chr13 99975209 99975298 -1897871 - L2 LINE L2 -537 2777 2689 2377 86 0 44 chr13 99975298 99975613 -1897556 + AluSq SINE Alu 1 301 -12 526 348 52 54 chr13 99975613 99976057 -1897112 - L2 LINE L2 -625 2689 2245 439 381 105 5 chr13 99978202 99978607 -1894562 + HAL1b LINE L1 518 777 -571 2285 128 0 0 chr13 99978628 99978932 -1894237 - AluSx SINE Alu -8 304 1 381 196 93 28 chr13 99978933 99979040 -1894129 - L1MEc LINE L1 -6261 135 22 357 287 169 59 chr13 99979063 99979300 -1893869 - L1MEc LINE L1 -1799 4416 4154 280 319 50 6 chr13 99979412 99979572 -1893597 - L1MEc LINE L1 -2164 4051 3885 227 300 218 0 chr13 99980651 99980761 -1892408 - MIR SINE MIR -10 252 119 417 309 64 8 chr13 99981188 99981424 -1891745 - LTR16A LTR ERVL -4 446 198 674 227 84 12 chr13 99983510 99983696 -1889473 - MLT1F LTR MaLR -8 582 335 338 260 0 0 chr13 99983771 99983844 -1889325 - MLT1F LTR MaLR -380 187 115 257 255 170 126 chr13 99983901 99984172 -1888997 - MLT1F-int LTR MaLR 0 1371 1089 * 4054 265 78 29 chr13 99984165 99986516 -1886653 - L1MDb LINE L1 -1140 5266 2856 * 10623 108 4 6 chr13 99986515 99988169 -1885000 + L1P LINE L1 3631 5280 -866 1656 240 56 94 chr13 99988167 99990021 -1883148 - L1MDb LINE L1 -3546 2860 1027 * 2932 254 63 21 chr13 99990065 99990907 -1882262 - L1MEc LINE L1 -2636 3579 2774 2346 117 0 0 chr13 99990907 99991216 -1881953 - AluSq SINE Alu -4 309 1 2932 254 63 21 chr13 99991216 99991732 -1881437 - L1MEc LINE L1 -3441 2774 2211 1535 173 114 7 chr13 99991732 99992038 -1881131 + MER44D DNA MER2_type 1 609 0 2932 254 63 21 chr13 99992038 99992073 -1881096 - L1MEc LINE L1 -4004 2211 2179 326 350 50 0 chr13 99992158 99992278 -1880891 + L1MEd LINE L1 545 670 -5449 216 0 0 0 chr13 99992302 99992326 -1880843 + (TA)n Simple_repeat Simple_repeat 2 25 0 225 158 256 0 chr13 99993820 99993902 -1879267 - MIR SINE MIR -74 188 86 24 53 0 0 chr13 99994158 99994196 -1878973 + AT_rich Low_complexity Low_complexity 1 38 0 669 104 269 22 chr13 99994303 99994437 -1878732 + AluSg/x SINE Alu 123 289 -20 387 234 180 0 chr13 99994795 99994923 -1878246 + MIR SINE MIR 42 192 -70 1783 164 51 13 chr13 99995303 99995693 -1877476 + ERVL-B1 LTR ERVL 5349 5753 -11 1314 216 50 82 chr13 99995695 99996173 -1876996 + MLT2B1 LTR ERVL 2 464 -56 181 83 56 0 chr13 99996242 99996278 -1876891 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 253 208 0 0 chr13 99996326 99996374 -1876795 + Ricksha DNA DNA 860 907 -1139 190 265 0 108 chr13 100008959 100009042 -1864127 - L2 LINE L2 -2882 432 359 251 152 0 0 chr13 100014480 100014526 -1858643 - MER4-int LTR ERV1 -5441 1157 1112 342 255 20 0 chr13 100014526 100014679 -1858490 + (CA)n Simple_repeat Simple_repeat 1 156 0 218 264 0 0 chr13 100014701 100014754 -1858415 + (CA)n Simple_repeat Simple_repeat 2 54 0 951 152 0 0 chr13 100014918 100015056 -1858113 + AluSg/x SINE Alu 137 274 -38 400 172 0 20 chr13 100015061 100015160 -1858009 + GA-rich Low_complexity Low_complexity 5 101 0 3206 107 18 0 chr13 100017071 100017529 -1855640 + L1PA11 LINE L1 5709 6174 0 246 62 0 0 chr13 100017566 100017598 -1855571 + (CA)n Simple_repeat Simple_repeat 1 32 0 335 330 0 27 chr13 100017905 100018017 -1855152 - MIR3 SINE MIR -28 180 72 988 219 50 45 chr13 100018075 100018477 -1854692 + MLT1C LTR MaLR 1 374 -16 206 224 15 45 chr13 100019795 100019862 -1853307 + CT-rich Low_complexity Low_complexity 3 67 0 361 285 54 0 chr13 100021083 100021213 -1851956 + MER6 DNA MER2_type 4 140 -725 1724 124 143 0 chr13 100021411 100021677 -1851492 + AluSq SINE Alu 4 307 -6 1902 284 57 32 chr13 100021728 100022636 -1850533 + L1MC4a LINE L1 6871 7801 -7 1829 125 94 31 chr13 100022638 100022990 -1850179 - THE1C LTR MaLR 0 375 2 2288 120 0 0 chr13 100023878 100024187 -1848982 - AluSx SINE Alu -3 309 1 227 164 82 0 chr13 100024450 100024511 -1848658 + (CACCC)n Simple_repeat Simple_repeat 3 68 0 213 39 0 0 chr13 100025546 100025572 -1847597 + (T)n Simple_repeat Simple_repeat 1 26 0 864 229 21 0 chr13 100027597 100027785 -1845384 - Tigger3(Golem) DNA MER2_type -2742 287 96 * 5007 169 46 17 chr13 100027780 100028702 -1844467 + Tigger3b DNA MER2_type 199 1154 -1874 1515 91 101 0 chr13 100028702 100028911 -1844258 + MER30 DNA MER1_type 1 230 0 5007 169 46 17 chr13 100028911 100028991 -1844178 + Tigger3b DNA MER2_type 1154 1230 -1 891 209 175 12 chr13 100028991 100029315 -1843854 + Charlie1 DNA MER1_type 2231 2608 -153 4000 232 94 41 chr13 100029741 100030376 -1842793 + L1MDa LINE L1 3 603 -5937 4353 83 14 2 chr13 100030376 100030953 -1842216 + L1PA10 LINE L1 5581 6164 -4 4000 232 94 41 chr13 100030953 100031949 -1841220 + L1MDa LINE L1 603 2138 -4402 2234 136 0 0 chr13 100031949 100032294 -1840875 - AluSq SINE Alu 0 313 1 4000 232 94 41 chr13 100032294 100032470 -1840699 + L1MDa LINE L1 2138 2303 -4237 180 0 0 0 chr13 100032470 100032490 -1840679 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr13 100032492 100032514 -1840655 + AT_rich Low_complexity Low_complexity 1 22 0 1119 136 8 32 chr13 100032900 100032975 -1840194 - Tigger7 DNA MER2_type -6 2485 2410 15380 129 16 21 chr13 100032975 100035406 -1837763 + Tigger1 DNA MER2_type 1 2418 0 1119 136 8 32 chr13 100035406 100035565 -1837604 - Tigger7 DNA MER2_type -81 2410 2254 630 122 0 0 chr13 100035573 100035671 -1837498 + (TC)n Simple_repeat Simple_repeat 2 99 0 387 132 60 115 chr13 100061201 100061326 -1811843 + AluSc SINE Alu 33 112 -187 1399 82 36 0 chr13 100061357 100061552 -1811617 + LTR8 LTR ERV1 1 202 -489 1050 140 0 0 chr13 100061711 100061890 -1811279 + (TC)n Simple_repeat Simple_repeat 1 179 0 295 227 30 0 chr13 100061922 100061988 -1811181 - Tigger7 DNA MER2_type -661 72 5 181 328 92 8 chr13 100062426 100062545 -1810624 + MIR SINE MIR 60 188 -74 568 281 99 26 chr13 100062568 100062920 -1810249 + MLT1C LTR MaLR 44 421 -46 868 199 11 5 chr13 100065212 100065403 -1807766 - L1MB2 LINE L1 0 6171 5980 242 277 64 0 chr13 100068774 100068868 -1804301 + Charlie8 DNA MER1_type 105 204 -2213 281 336 19 0 chr13 100069142 100069249 -1803920 + MER5A DNA MER1_type 4 112 -77 223 130 37 0 chr13 100071857 100071911 -1801258 + CT-rich Low_complexity Low_complexity 2 57 0 258 328 101 0 chr13 100072127 100072246 -1800923 - MIR SINE MIR -4 258 128 878 263 35 45 chr13 100072633 100072945 -1800224 + MER20B DNA MER1_type 201 509 -274 395 314 63 24 chr13 100073078 100073330 -1799839 + MER20B DNA MER1_type 520 781 -2 1528 214 38 3 chr13 100075411 100075756 -1797413 - MLT1A2 LTR MaLR -2 372 16 257 196 36 29 chr13 100078298 100078436 -1794733 + (TG)n Simple_repeat Simple_repeat 2 140 0 21 36 0 0 chr13 100079294 100079322 -1793847 + AT_rich Low_complexity Low_complexity 1 28 0 3644 130 68 0 chr13 100079322 100079954 -1793215 - L1PA16 LINE L1 -8 6158 5484 5230 191 24 11 chr13 100080342 100081679 -1791490 - L1PA16 LINE L1 -690 5476 4119 432 97 0 0 chr13 100082422 100082484 -1790685 + (GGGAA)n Simple_repeat Simple_repeat 4 65 0 366 61 0 0 chr13 100082484 100082533 -1790636 + (TGGA)n Simple_repeat Simple_repeat 3 51 0 830 247 141 11 chr13 100084010 100084273 -1788896 + LTR48 LTR ERV1 156 452 -335 505 235 97 71 chr13 100084286 100084524 -1788645 + LTR48B LTR ERV1 382 625 -19 1373 225 41 16 chr13 100084950 100085315 -1787854 + MLT1A2 LTR MaLR 1 374 0 304 192 384 0 chr13 100085643 100085742 -1787427 + MLT1C LTR MaLR 400 536 -13 220 309 37 0 chr13 100085785 100085866 -1787303 - MIR SINE MIR -141 121 38 2484 248 93 29 chr13 100085971 100087244 -1785925 + L1MD2 LINE L1 32 4312 -2228 907 286 32 9 chr13 100087244 100087586 -1785583 + L1MD2 LINE L1 4943 5292 -1248 427 221 71 9 chr13 100087589 100087632 -1785537 - MLT2D LTR ERVL -294 120 81 2184 107 10 0 chr13 100087632 100087922 -1785247 - AluSq SINE Alu -20 293 1 427 221 71 9 chr13 100087922 100087991 -1785178 - MLT2D LTR ERVL -333 81 1 921 214 38 5 chr13 100088073 100088283 -1784886 + MLT1D LTR MaLR 289 505 0 2133 256 106 13 chr13 100088287 100089032 -1784137 + L1MD2 LINE L1 5730 6543 -210 1020 261 96 4 chr13 100089044 100089324 -1783845 + Tigger5 DNA MER2_type 2 307 -2016 951 153 30 110 chr13 100089324 100089560 -1783609 + Tigger5 DNA MER2_type 2107 2323 0 236 216 27 0 chr13 100089627 100089775 -1783394 + (TA)n Simple_repeat Simple_repeat 2 153 0 444 255 37 19 chr13 100089822 100089983 -1783186 + L1MD2 LINE L1 6601 8388 -1 1027 155 31 0 chr13 100089993 100090154 -1783015 + FRAM SINE Alu 1 161 -15 208 235 25 25 chr13 100090704 100090785 -1782384 + A-rich Low_complexity Low_complexity 3 83 0 883 282 65 78 chr13 100091029 100092107 -1781062 + HAL1b LINE L1 91 1339 -9 198 0 0 0 chr13 100092226 100092248 -1780921 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1930 158 0 3 chr13 100092250 100092534 -1780635 - AluSx SINE Alu -29 283 1 1774 197 0 3 chr13 100092534 100092838 -1780331 - AluJb SINE Alu -9 303 1 24 67 0 0 chr13 100092849 100092894 -1780275 + AT_rich Low_complexity Low_complexity 1 45 0 2346 50 29 4 chr13 100093391 100093670 -1779499 - AluY SINE Alu -25 286 1 288 224 97 22 chr13 100093810 100093944 -1779225 + MLT1H LTR MaLR 252 395 -154 354 177 38 0 chr13 100094010 100094089 -1779080 + MER31B LTR ERV1 1 82 -384 227 259 0 0 chr13 100094189 100094247 -1778922 - MER89 LTR ERV1 -501 58 1 2065 138 38 24 chr13 100094613 100094983 -1778186 + THE1C LTR MaLR 1 375 0 205 75 50 0 chr13 100096327 100096367 -1776802 + (CA)n Simple_repeat Simple_repeat 2 43 0 665 169 164 40 chr13 100096517 100096718 -1776451 - MER31B LTR ERV1 -9 457 232 543 210 94 14 chr13 100096731 100096869 -1776300 + MER31-int LTR ERV1 3595 3743 -1193 701 224 40 76 chr13 100097030 100097280 -1775889 - MER31B LTR ERV1 -225 241 1 9504 203 90 73 chr13 100097281 100099673 -1773496 - MER31-int LTR ERV1 -21 4915 2456 2111 125 34 0 chr13 100099673 100099968 -1773201 + AluSq SINE Alu 1 305 -8 9504 203 90 73 chr13 100099968 100100736 -1772433 - MER31-int LTR ERV1 -2480 2456 1702 1890 178 0 10 chr13 100100749 100101053 -1772116 + AluJb SINE Alu 1 301 -11 5079 95 13 3 chr13 100101067 100101751 -1771418 - LTR8 LTR ERV1 0 691 1 268 57 0 0 chr13 100101751 100101786 -1771383 - HUERS-P1 LTR ERV1 0 6263 6229 198 0 0 0 chr13 100101791 100101813 -1771356 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 614 121 8 113 chr13 100101814 100101938 -1771231 - AluSc SINE Alu -197 112 2 2281 98 10 0 chr13 100101940 100102247 -1770922 - HUERS-P1 LTR ERV1 -19 6244 5935 2195 131 0 3 chr13 100102247 100102561 -1770608 + AluSq SINE Alu 1 313 0 30926 102 32 19 chr13 100102583 100102615 -1770554 - HUERS-P1 LTR ERV1 -344 5417 5387 1073 87 5 27 chr13 100102615 100102799 -1770370 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 30926 102 32 19 chr13 100102799 100108198 -1764971 - HUERS-P1 LTR ERV1 -374 5387 1 5242 85 15 0 chr13 100108198 100108879 -1764290 - LTR8 LTR ERV1 0 691 1 332 269 91 34 chr13 100108884 100109059 -1764110 - LTR57-int LTR ERVL -3921 1422 1238 * 2849 211 151 50 chr13 100108947 100109948 -1763221 - MER31-int LTR ERV1 -3485 1451 350 1246 180 24 36 chr13 100109953 100110056 -1763113 - MER72 LTR ERV1 -234 488 385 2155 129 135 5 chr13 100110056 100110435 -1762734 - MSTA LTR MaLR 0 428 1 1246 180 24 36 chr13 100110435 100110581 -1762588 - MER72 LTR ERV1 -337 385 242 281 155 0 84 chr13 100112887 100112958 -1760211 + MER5A DNA MER1_type 4 68 -121 184 305 35 21 chr13 100113087 100113228 -1759941 - MER5B DNA MER1_type -35 143 1 641 273 99 8 chr13 100113236 100113316 -1759853 - MER33 DNA MER1_type -2261 324 253 1918 111 0 0 chr13 100113316 100113569 -1759600 + AluSc SINE Alu 43 295 -14 641 273 99 8 chr13 100113569 100113741 -1759428 - MER33 DNA MER1_type -2332 253 49 226 139 0 0 chr13 100113779 100113815 -1759354 - MIR SINE MIR -60 148 113 502 249 81 85 chr13 100114560 100114994 -1758175 - MER89 LTR ERV1 0 559 128 2112 121 3 10 chr13 100115034 100115339 -1757830 - AluSx SINE Alu -9 303 1 209 282 71 0 chr13 100116072 100116157 -1757012 + L2 LINE L2 3168 3258 -14 322 202 64 11 chr13 100116782 100116876 -1756293 + MER81 DNA DNA 1 99 -15 292 307 61 12 chr13 100116959 100117122 -1756047 - MIR SINE MIR -29 233 63 218 261 101 0 chr13 100118108 100118177 -1754992 - MIR SINE MIR -58 150 75 1994 126 155 11 chr13 100119291 100119665 -1753504 - MSTA LTR MaLR 0 428 1 580 245 36 21 chr13 100119931 100120123 -1753046 - L1MC4a LINE L1 -701 7107 6913 279 246 75 0 chr13 100120123 100120212 -1752957 - L1MD3 LINE L1 -1057 6750 6634 483 211 32 64 chr13 100120305 100120461 -1752708 - L1MD3 LINE L1 -2071 5737 5587 764 270 41 8 chr13 100120785 100121052 -1752117 - L1MD3 LINE L1 -2275 5533 5258 199 93 47 0 chr13 100121061 100121104 -1752065 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 1185 318 101 28 chr13 100121163 100123020 -1750149 - L1MD3 LINE L1 -987 5159 3168 * 6721 129 11 2 chr13 100122997 100124502 -1748667 - L1PB1 LINE L1 0 6151 4638 378 306 111 29 chr13 100124512 100124545 -1748624 - L1MD3 LINE L1 -2947 3199 3170 1837 58 9 0 chr13 100124545 100124768 -1748401 - AluY SINE Alu -3 308 84 378 306 111 29 chr13 100124768 100125592 -1747577 - L1MD3 LINE L1 -2976 3170 2272 2190 150 13 8 chr13 100125642 100126021 -1747148 - L1MB3 LINE L1 -2 6181 5801 985 179 51 16 chr13 100126021 100126256 -1746913 + L1M3 LINE L1 5228 5470 -710 22842 44 0 0 chr13 100126395 100129943 -1743226 + L1PA5 LINE L1 2597 6149 -5 322 187 13 0 chr13 100129980 100130055 -1743114 - L1MB3 LINE L1 -845 5301 5226 * 895 158 12 12 chr13 100130038 100130203 -1742966 + L1MB3 LINE L1 5787 5951 -232 1799 166 14 0 chr13 100130211 100130506 -1742663 + L1M3 LINE L1 5484 5782 -401 23 0 0 0 chr13 100130732 100130755 -1742414 + AT_rich Low_complexity Low_complexity 1 23 0 5869 149 19 32 chr13 100130864 100132397 -1740772 - L1MA4 LINE L1 0 6300 4782 * 7164 239 50 43 chr13 100132391 100133368 -1739801 - L1M1 LINE L1 -4154 3411 2443 2367 159 34 7 chr13 100133368 100133782 -1739387 - MSTB LTR MaLR -1 425 1 7164 239 50 43 chr13 100133782 100133880 -1739289 - L1M1 LINE L1 -5122 2443 2347 192 77 0 0 chr13 100133880 100133906 -1739263 + (TTA)n Simple_repeat Simple_repeat 2 27 0 7164 239 50 43 chr13 100133906 100133968 -1739201 - L1M1 LINE L1 -5218 2347 2287 2330 118 0 3 chr13 100133968 100134281 -1738888 - AluSx SINE Alu 0 312 1 7164 239 50 43 chr13 100134281 100135832 -1737337 - L1M1 LINE L1 -5278 2287 16 284 0 0 27 chr13 100135842 100135879 -1737290 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1942 135 0 0 chr13 100135890 100136156 -1737013 - AluSx SINE Alu -46 266 1 261 0 0 0 chr13 100136374 100136403 -1736766 + (TG)n Simple_repeat Simple_repeat 2 30 0 571 344 65 45 chr13 100136640 100136977 -1736192 - HAL1b LINE L1 -997 351 8 27 0 0 0 chr13 100137443 100137470 -1735699 + AT_rich Low_complexity Low_complexity 1 27 0 683 286 64 18 chr13 100137703 100138045 -1735124 + L1MEd LINE L1 58 415 -5704 667 270 34 13 chr13 100138159 100138396 -1734773 + L1MEd LINE L1 591 832 -5287 1160 143 6 0 chr13 100138444 100138612 -1734557 + AluSq SINE Alu 135 303 -10 2275 277 90 20 chr13 100138620 100141148 -1732021 + L1MCc LINE L1 60 3001 -4121 3052 101 2 0 chr13 100141180 100141634 -1731535 + L1PA13 LINE L1 5644 6098 -65 2363 229 25 22 chr13 100141693 100142306 -1730863 + L1MCc LINE L1 3110 3727 -3214 3295 128 24 2 chr13 100142306 100142808 -1730361 - MER75 DNA T2_type 0 514 2 2363 229 25 22 chr13 100142808 100142909 -1730260 + L1MCc LINE L1 3727 3826 -3115 616 305 72 71 chr13 100142909 100143558 -1729611 + L1MEd LINE L1 822 1560 -4604 216 304 246 7 chr13 100144399 100144537 -1728632 + L2 LINE L2 3102 3272 0 297 108 27 14 chr13 100145187 100145261 -1727908 + GA-rich Low_complexity Low_complexity 2 76 0 5719 238 61 100 chr13 100145633 100146707 -1726462 - L1M4 LINE L1 -1153 4993 3879 546 297 64 0 chr13 100146707 100146909 -1726260 - MER58A DNA MER1_type -9 215 1 5719 238 61 100 chr13 100146909 100147867 -1725302 - L1M4 LINE L1 -2267 3879 2885 2192 144 0 0 chr13 100147867 100148179 -1724990 + AluSx SINE Alu 1 312 0 5719 238 61 100 chr13 100148179 100148666 -1724503 - L1M4 LINE L1 -3261 2885 2392 1935 171 10 0 chr13 100148666 100148971 -1724198 + AluJo SINE Alu 1 308 -4 5719 238 61 100 chr13 100148971 100149182 -1723987 - L1M4 LINE L1 -3754 2392 2174 2294 259 83 15 chr13 100149174 100149744 -1723425 - L1MEc LINE L1 -5430 966 316 * 315 0 0 0 chr13 100149744 100149779 -1723390 + (TG)n Simple_repeat Simple_repeat 2 36 0 2294 259 83 15 chr13 100149779 100150070 -1723099 - L1MEc LINE L1 -6080 316 46 273 257 50 10 chr13 100150157 100150258 -1722911 + MIR SINE MIR 19 123 -85 185 239 65 0 chr13 100151091 100151137 -1722032 - L2 LINE L2 0 3272 3224 338 259 95 9 chr13 100152912 100153028 -1720141 - L2 LINE L2 -1 3312 3187 255 222 51 0 chr13 100154494 100154611 -1718558 + (CA)n Simple_repeat Simple_repeat 2 124 0 394 274 52 7 chr13 100154629 100154782 -1718387 + (CA)n Simple_repeat Simple_repeat 2 161 0 458 312 81 11 chr13 100155309 100155495 -1717674 - MIR3 SINE MIR -6 202 4 209 349 62 23 chr13 100155617 100155746 -1717423 - MIR SINE MIR -46 216 83 1226 249 75 8 chr13 100156452 100156922 -1716247 - L1MEc LINE L1 -3366 3575 3075 204 0 54 27 chr13 100156929 100156966 -1716203 + (TA)n Simple_repeat Simple_repeat 1 38 0 434 284 75 7 chr13 100156993 100157271 -1715898 - L1MEc LINE L1 -4102 3020 2724 544 335 65 24 chr13 100157272 100157562 -1715607 - L1MEc LINE L1 -4221 2901 2600 593 270 115 31 chr13 100157584 100158235 -1714934 - L1MEc LINE L1 -4444 2497 1792 63 0 0 0 chr13 100158261 100158324 -1714845 + AT_rich Low_complexity Low_complexity 1 63 0 276 294 18 9 chr13 100158378 100158487 -1714682 - L1MEc LINE L1 -4930 1493 1384 228 35 0 0 chr13 100159758 100159787 -1713382 + (TG)n Simple_repeat Simple_repeat 1 29 0 279 54 0 0 chr13 100159787 100159824 -1713345 + (GA)n Simple_repeat Simple_repeat 2 38 0 2489 85 0 0 chr13 100160489 100160795 -1712374 - AluSx SINE Alu -6 306 1 457 275 67 10 chr13 100161762 100161867 -1711302 - MER58A DNA MER1_type -2196 224 126 1850 99 15 37 chr13 100161867 100162140 -1711029 + AluSx SINE Alu 33 299 -13 457 275 67 10 chr13 100162140 100162227 -1710942 - MER58A DNA MER1_type -2294 126 21 280 296 96 0 chr13 100162288 100162403 -1710766 + MER3 DNA MER1_type 84 209 0 869 233 54 12 chr13 100163341 100163599 -1709570 - MLT2D LTR ERVL -144 270 2 505 239 146 61 chr13 100166836 100167247 -1705922 + MLT1E LTR MaLR 67 585 -8 398 286 19 32 chr13 100168473 100168627 -1704542 + LTR40a LTR ERVL 4 155 -364 357 261 76 17 chr13 100168737 100168856 -1704313 + LTR40b LTR ERVL 337 462 0 267 350 80 7 chr13 100175691 100175828 -1697341 - L2 LINE L2 -10 3262 3116 348 268 63 0 chr13 100176058 100176185 -1696984 - MLT1J LTR MaLR -155 356 222 534 204 45 19 chr13 100176602 100176759 -1696410 - Charlie5 DNA MER1_type -53 2559 2399 320 252 41 41 chr13 100177276 100177399 -1695770 + MER5A DNA MER1_type 33 155 -34 333 272 101 31 chr13 100177772 100178029 -1695140 - Charlie7 DNA MER1_type -44 2568 2294 5212 157 21 8 chr13 100178097 100179875 -1693294 - L1PA15 LINE L1 -27 6138 4340 2085 270 52 37 chr13 100179876 100180686 -1692483 - Charlie7 DNA MER1_type -306 2306 1485 551 331 55 14 chr13 100180707 100181127 -1692042 + L1MCc LINE L1 18 454 -5969 1206 301 83 34 chr13 100181622 100183503 -1689666 + L1MCc LINE L1 1132 3291 -3650 1163 229 30 10 chr13 100183504 100183809 -1689360 + L1MC4 LINE L1 6772 7082 -960 2214 113 0 0 chr13 100183809 100184114 -1689055 + AluSx SINE Alu 1 305 0 1075 323 78 3 chr13 100184118 100184734 -1688435 + L1MC4 LINE L1 7238 7899 -143 250 187 7 4 chr13 100184738 100184803 -1688366 + L1MC4 LINE L1 7933 7995 0 * 1109 296 50 18 chr13 100184799 100185400 -1687769 + L1ME LINE L1 5191 5808 -356 205 302 117 17 chr13 100187149 100187357 -1685812 + MIR SINE MIR 30 261 -1 807 172 0 0 chr13 100188434 100188556 -1684613 - FLAM_C SINE Alu -18 125 4 258 189 38 0 chr13 100188569 100188622 -1684547 + Tigger5 DNA MER2_type 2265 2319 -4 493 292 146 45 chr13 100189505 100189923 -1683246 + LTR16B LTR ERVL 5 464 0 713 238 66 100 chr13 100189923 100190028 -1683141 + L1ME LINE L1 4234 4341 -1805 1788 170 10 3 chr13 100190028 100190316 -1682853 + AluJb SINE Alu 1 290 -22 713 238 66 100 chr13 100190316 100190572 -1682597 + L1ME LINE L1 4341 4576 -1570 2685 123 41 5 chr13 100190572 100190985 -1682184 - MSTA LTR MaLR 0 428 1 713 238 66 100 chr13 100190985 100191110 -1682059 + L1ME LINE L1 4576 4704 -1442 1194 267 86 35 chr13 100191227 100191360 -1681809 + L1ME LINE L1 4895 5020 -1142 1220 146 82 14 chr13 100191360 100191580 -1681589 + MER46A DNA MER2_type 2 236 0 1194 267 86 35 chr13 100191580 100191650 -1681519 + L1ME LINE L1 5020 5085 -1077 5511 130 12 22 chr13 100191650 100193104 -1680065 + L1PA16 LINE L1 4714 6162 -4 1194 267 86 35 chr13 100193104 100193795 -1679374 + L1ME LINE L1 5085 5815 -347 311 302 280 0 chr13 100194210 100194528 -1678641 + L2 LINE L2 1862 2268 -1046 824 250 65 49 chr13 100194539 100194863 -1678306 - L1MEc LINE L1 -6034 362 34 2700 246 84 33 chr13 100194944 100195091 -1678078 + L1ME1 LINE L1 2342 2480 -3946 252 0 0 0 chr13 100195091 100195119 -1678050 + (CA)n Simple_repeat Simple_repeat 2 29 0 2700 246 84 33 chr13 100195119 100195854 -1677315 + L1ME1 LINE L1 2480 3357 -3069 2066 138 0 0 chr13 100195854 100196144 -1677025 + AluSx SINE Alu 1 290 -22 2700 246 84 33 chr13 100196144 100196542 -1676627 + L1ME1 LINE L1 3357 3733 -2693 2392 183 134 11 chr13 100196537 100197105 -1676064 + L1MC3 LINE L1 6932 7569 -216 * 2100 97 7 0 chr13 100197123 100197392 -1675777 + AluSx SINE Alu 1 271 -41 476 93 13 0 chr13 100197402 100197477 -1675692 + (GGGA)n Simple_repeat Simple_repeat 4 79 0 1212 201 50 0 chr13 100197480 100197759 -1675410 - MER33 DNA MER1_type -1 323 31 2216 115 7 0 chr13 100197911 100198215 -1674954 + AluSx SINE Alu 1 306 -6 1665 227 131 39 chr13 100198369 100199122 -1674047 + L1ME1 LINE L1 5471 6266 -180 234 241 76 0 chr13 100199836 100199915 -1673254 - L1 LINE L1 -1329 4817 4733 22 39 0 39 chr13 100200200 100200234 -1672935 + AT_rich Low_complexity Low_complexity 1 34 -15 2181 116 0 3 chr13 100200234 100200535 -1672634 + AluSq SINE Alu 1 300 -13 22 39 0 39 chr13 100200535 100200551 -1672618 + AT_rich Low_complexity Low_complexity 34 49 0 13160 114 35 30 chr13 100201150 100203281 -1669888 - Tigger1 DNA MER2_type -2 2416 276 441 36 0 0 chr13 100206619 100206674 -1666495 + (TG)n Simple_repeat Simple_repeat 2 56 0 2465 89 0 0 chr13 100207421 100207724 -1665445 + AluSx SINE Alu 1 303 -9 241 264 107 25 chr13 100209422 100209543 -1663626 - L1MC/D LINE L1 -1909 5899 5769 2105 107 18 0 chr13 100209825 100210126 -1663043 - AluSx SINE Alu 0 306 1 325 298 60 13 chr13 100210697 100210848 -1662321 - L1 LINE L1 -2976 3170 3013 967 79 16 0 chr13 100211230 100211357 -1661812 - BC200 scRNA scRNA -71 129 1 576 228 85 27 chr13 100213787 100214007 -1659162 - L1MC/D LINE L1 -506 5664 5442 2004 176 17 6 chr13 100214215 100214838 -1658331 - L1M1 LINE L1 -724 5581 4950 267 178 68 14 chr13 100215051 100215124 -1658045 - L1MC/D LINE L1 -2218 3928 3852 24 67 0 0 chr13 100215505 100215550 -1657619 + AT_rich Low_complexity Low_complexity 1 45 0 2627 50 0 0 chr13 100216276 100216575 -1656594 + AluY SINE Alu 1 299 -12 255 283 85 19 chr13 100216728 100216834 -1656335 - MIR SINE MIR -90 172 60 1915 152 37 0 chr13 100217152 100217474 -1655695 - MER7A DNA MER2_type -14 332 1 300 264 7 13 chr13 100217586 100217741 -1655428 + (CATATA)n Simple_repeat Simple_repeat 1 154 0 260 135 0 39 chr13 100217742 100217794 -1655375 + Tigger5 DNA MER2_type 6 55 -2268 1808 139 67 26 chr13 100217807 100218153 -1655016 - MER46B DNA MER2_type 0 236 2 287 266 54 37 chr13 100219728 100219954 -1653215 + L1M4 LINE L1 3862 4090 -2056 2483 84 0 0 chr13 100222107 100222416 -1650753 - AluY SINE Alu -2 309 1 2139 104 7 0 chr13 100222925 100223239 -1649930 - AluSx SINE Alu 0 312 1 1977 99 8 0 chr13 100223816 100224078 -1649091 + AluSx SINE Alu 40 303 -9 315 161 0 0 chr13 100224079 100224135 -1649034 + (TA)n Simple_repeat Simple_repeat 1 56 0 30 59 0 0 chr13 100224535 100224586 -1648583 + AT_rich Low_complexity Low_complexity 1 51 0 185 344 116 31 chr13 100228197 100228647 -1644522 + L2 LINE L2 2191 2678 -636 189 319 98 81 chr13 100228730 100229037 -1644132 + L2 LINE L2 2958 3269 -3 364 281 107 36 chr13 100230237 100230433 -1642736 - MIR SINE MIR -20 242 33 407 287 26 0 chr13 100230725 100230840 -1642329 - HsTC2c DNA Tc2 -6 723 606 606 246 24 57 chr13 100230897 100231108 -1642061 - HsTC2c DNA Tc2 -288 441 238 2144 122 3 26 chr13 100231750 100232062 -1641107 + AluSx SINE Alu 1 305 -7 2041 132 0 3 chr13 100232065 100232354 -1640815 + AluSx SINE Alu 3 290 -22 2133 191 56 47 chr13 100233412 100233946 -1639223 + MER44D DNA MER2_type 3 596 -9 672 134 10 0 chr13 100233982 100234079 -1639090 + AluJo SINE Alu 2 99 -213 255 179 54 36 chr13 100234650 100234706 -1638463 + LTR39 LTR ERV1 317 373 -410 1100 262 33 27 chr13 100234834 100235170 -1637999 + MER4D LTR ERV1 566 903 0 274 295 33 33 chr13 100236624 100236746 -1636423 + MIR SINE MIR 20 141 -121 2081 113 0 32 chr13 100236770 100237080 -1636089 - AluSq SINE Alu -13 300 1 399 224 9 56 chr13 100237436 100237543 -1635626 - MIR SINE MIR -47 215 114 716 188 69 120 chr13 100237677 100238014 -1635155 + MER51C LTR ERV1 328 639 -1 2259 91 14 0 chr13 100238421 100238717 -1634452 + AluSp SINE Alu 1 300 -13 354 59 0 132 chr13 100238775 100238843 -1634326 + AluJo SINE Alu 81 139 -163 2343 106 0 7 chr13 100238843 100239144 -1634025 + AluSx SINE Alu 1 299 -13 219 255 85 0 chr13 100240354 100240448 -1632721 - L2 LINE L2 -3 3269 3168 354 257 71 36 chr13 100240742 100240882 -1632287 + MIR SINE MIR 118 262 0 816 240 150 7 chr13 100241578 100241865 -1631304 + L1MD3 LINE L1 7491 7818 -177 264 227 108 65 chr13 100243153 100243338 -1629831 + LTR16C LTR ERVL 291 483 -8 1055 261 92 17 chr13 100243403 100243751 -1629418 - MLT1A2 LTR MaLR 0 374 1 262 326 68 32 chr13 100243978 100244257 -1628912 + HERV16 LTR ERVL 362 650 -4346 336 272 0 0 chr13 100244376 100244457 -1628712 + MLT1A1 LTR MaLR 14 94 -280 2225 106 3 7 chr13 100244485 100244786 -1628383 - AluSx SINE Alu -12 300 1 459 229 36 50 chr13 100244844 100244984 -1628185 + MLT1A1 LTR MaLR 225 362 -3 342 0 0 0 chr13 100245400 100245438 -1627731 + (TG)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chr13 100245437 100245465 -1627704 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1621 160 18 36 chr13 100245465 100245746 -1627423 - AluJo SINE Alu -34 278 3 244 317 19 10 chr13 100245767 100245871 -1627298 + L1MEc LINE L1 1651 1755 -4641 28 61 0 0 chr13 100246035 100246084 -1627085 + AT_rich Low_complexity Low_complexity 1 49 0 513 270 52 81 chr13 100246209 100246331 -1626838 + L1MEc LINE L1 2023 2147 -4068 2275 79 3 10 chr13 100246331 100246622 -1626547 + AluSx SINE Alu 6 294 -18 513 270 52 81 chr13 100246622 100247135 -1626034 + L1MEc LINE L1 2147 2606 -3609 259 250 100 0 chr13 100247267 100247347 -1625822 + L1MEc LINE L1 2677 2764 -3451 2154 104 10 0 chr13 100247413 100247710 -1625459 - AluSx SINE Alu -12 300 1 212 175 0 0 chr13 100247791 100247831 -1625338 + (TTAAA)n Simple_repeat Simple_repeat 3 42 0 498 201 45 84 chr13 100247840 100247994 -1625175 - MER106B DNA MER1_type -911 148 1 2195 281 73 31 chr13 100248008 100248236 -1624933 + L1MEc LINE L1 2910 3127 -3088 2181 104 0 0 chr13 100248236 100248525 -1624644 + AluSx SINE Alu 1 289 -23 2195 281 73 31 chr13 100248525 100249173 -1623996 + L1MEc LINE L1 3127 3746 -2469 2082 94 58 0 chr13 100249173 100249449 -1623720 + AluSg SINE Alu 1 292 -18 2195 281 73 31 chr13 100249449 100249841 -1623328 + L1MEc LINE L1 3746 4241 -1974 306 0 0 0 chr13 100249841 100249875 -1623294 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2195 281 73 31 chr13 100249875 100249945 -1623224 + L1MEc LINE L1 4241 4307 -1908 2126 120 3 0 chr13 100250081 100250380 -1622789 + AluSx SINE Alu 11 310 -2 497 270 6 46 chr13 100250393 100250492 -1622677 + L1ME1 LINE L1 467 558 -5972 1747 189 3 3 chr13 100250492 100250793 -1622376 + AluJo SINE Alu 1 301 -11 497 270 6 46 chr13 100250793 100250867 -1622302 + L1ME1 LINE L1 558 633 -5897 1343 148 0 0 chr13 100250874 100251077 -1622092 - MLT1B LTR MaLR 0 390 188 232 282 14 0 chr13 100251084 100251155 -1622014 + L1ME1 LINE L1 1772 1843 -4697 2130 102 20 3 chr13 100251157 100251451 -1621718 - AluSq SINE Alu -14 299 1 444 298 73 20 chr13 100251451 100251699 -1621470 + L1ME1 LINE L1 2540 2800 -3740 1636 248 168 34 chr13 100251734 100252448 -1620721 - MER21B LTR ERV1 -53 810 1 395 244 43 0 chr13 100252605 100252724 -1620445 - L1MC4 LINE L1 -9 8025 7880 681 181 91 73 chr13 100252882 100253114 -1620055 - L1MC4 LINE L1 -188 7854 7619 3196 139 72 0 chr13 100255497 100256014 -1617155 + MER41C LTR ERV1 1 554 0 296 250 45 9 chr13 100256434 100256546 -1616623 - MER5A DNA MER1_type -33 156 41 1766 232 40 16 chr13 100257351 100257800 -1615369 + LTR40b LTR ERVL 3 462 0 255 283 50 0 chr13 100257801 100257900 -1615269 + L1ME LINE L1 5782 5885 -285 298 250 11 33 chr13 100258269 100258361 -1614808 + (TAGA)n Simple_repeat Simple_repeat 2 91 0 285 29 0 0 chr13 100258498 100258532 -1614637 + (T)n Simple_repeat Simple_repeat 1 34 0 2131 126 7 13 chr13 100259112 100259421 -1613748 + AluSx SINE Alu 1 307 -5 737 167 15 0 chr13 100260339 100260471 -1612698 + L1MA9 LINE L1 6179 6312 0 784 207 88 70 chr13 100260492 100260922 -1612247 + L1ME1 LINE L1 3303 3740 -2800 2508 224 88 5 chr13 100260922 100261570 -1611599 + L1MC3 LINE L1 7082 7783 -2 298 253 11 35 chr13 100261571 100261658 -1611511 - MER5B DNA MER1_type -53 125 41 752 250 75 18 chr13 100261734 100261781 -1611388 + L1ME1 LINE L1 5338 5381 -1179 4569 49 42 22 chr13 100261781 100262082 -1611087 + LTR14B LTR ERVK 4 297 -311 2751 36 0 0 chr13 100262082 100262391 -1610778 + AluY SINE Alu 1 309 -2 4569 49 42 22 chr13 100262391 100262682 -1610487 + LTR14B LTR ERVK 297 608 0 752 250 75 18 chr13 100262682 100263126 -1610043 + L1ME1 LINE L1 5381 5931 -629 1518 245 44 20 chr13 100263516 100264024 -1609145 + L1ME1 LINE L1 5910 6329 -231 667 174 43 0 chr13 100264164 100264279 -1608890 + FLAM_C SINE Alu 7 126 -17 355 207 207 84 chr13 100264302 100264625 -1608544 + HAL1 LINE L1 1283 1645 -862 437 206 272 26 chr13 100264643 100264871 -1608298 + L2 LINE L2 2502 2785 -529 2026 143 3 0 chr13 100265256 100265549 -1607620 - AluJb SINE Alu -18 294 1 22 0 0 0 chr13 100265812 100265834 -1607335 + AT_rich Low_complexity Low_complexity 1 22 0 194 323 31 73 chr13 100266054 100266150 -1607019 - L2 LINE L2 -2 3270 3179 463 293 23 0 chr13 100266838 100266971 -1606198 + MIR SINE MIR 31 166 -96 816 163 72 6 chr13 100267993 100268159 -1605010 - Charlie1 DNA MER1_type -2 2759 2583 753 261 92 28 chr13 100268183 100268543 -1604626 + MER20B DNA MER1_type 260 642 -141 1938 103 17 45 chr13 100269279 100269589 -1603580 + AluSx SINE Alu 1 302 0 286 164 16 33 chr13 100269740 100269801 -1603368 + AluSg/x SINE Alu 118 177 -123 1963 130 7 3 chr13 100270010 100270302 -1602867 + AluSx SINE Alu 9 301 -11 27 0 0 0 chr13 100271541 100271568 -1601601 + AT_rich Low_complexity Low_complexity 1 27 0 2195 102 3 10 chr13 100271607 100271900 -1601269 + AluSx SINE Alu 1 291 -21 191 260 117 0 chr13 100273408 100273485 -1599684 - MIR SINE MIR -82 180 95 210 37 0 0 chr13 100273711 100273738 -1599431 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1395 161 0 5 chr13 100273746 100273964 -1599205 - AluSx SINE Alu -36 276 60 25 40 0 20 chr13 100274296 100274316 -1598853 + AT_rich Low_complexity Low_complexity 1 20 -29 2087 124 7 3 chr13 100274316 100274606 -1598563 + AluSx SINE Alu 1 291 -21 25 40 0 20 chr13 100274606 100274635 -1598534 + AT_rich Low_complexity Low_complexity 20 49 0 183 363 25 0 chr13 100275867 100275947 -1597222 + L2 LINE L2 3177 3258 -14 22 35 0 0 chr13 100276733 100276762 -1596407 + AT_rich Low_complexity Low_complexity 1 29 0 2199 109 10 13 chr13 100276952 100277256 -1595913 + AluSx SINE Alu 1 303 -9 384 239 120 12 chr13 100278114 100278281 -1594888 + MER5A DNA MER1_type 1 185 -4 24 67 0 0 chr13 100278651 100278696 -1594473 + AT_rich Low_complexity Low_complexity 1 45 0 1036 218 5 0 chr13 100280768 100280970 -1592199 + MER2 DNA MER2_type 8 210 -135 743 176 26 11 chr13 100282742 100283010 -1590159 + (CACCAT)n Simple_repeat Simple_repeat 1 272 0 571 192 28 17 chr13 100283055 100283232 -1589937 + (CACCAT)n Simple_repeat Simple_repeat 1 179 0 642 159 23 17 chr13 100283282 100283458 -1589711 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 405 207 30 6 chr13 100283462 100283626 -1589543 + (CAT)n Simple_repeat Simple_repeat 3 170 0 327 284 170 49 chr13 100284881 100285310 -1587859 - L1MC/D LINE L1 -2070 5738 5258 2027 141 0 3 chr13 100285559 100285857 -1587312 - AluJb SINE Alu -15 297 1 264 230 14 0 chr13 100286047 100286121 -1587048 + L1M4 LINE L1 3855 3929 -2217 417 244 107 15 chr13 100286244 100286441 -1586728 - L1MC4 LINE L1 -1063 6979 6765 941 252 8 8 chr13 100287138 100287376 -1585793 - MER8 DNA MER2_type 0 239 2 670 171 85 101 chr13 100290093 100290292 -1582877 + Charlie4 DNA MER1_type 39 234 -1727 29 0 0 0 chr13 100290312 100290341 -1582828 + AT_rich Low_complexity Low_complexity 1 29 0 1205 86 6 0 chr13 100290440 100290602 -1582567 - L1PB1 LINE L1 -1 6150 5988 193 250 31 0 chr13 100290797 100290861 -1582308 + MER5B DNA MER1_type 1 66 -112 2343 60 0 3 chr13 100290886 100291198 -1581971 + AluY SINE Alu 1 311 0 5628 201 51 68 chr13 100291387 100293408 -1579761 - L1MB7 LINE L1 -11 6671 4726 1654 169 21 17 chr13 100293408 100293698 -1579471 - AluJo SINE Alu -21 291 1 5628 201 51 68 chr13 100293698 100294528 -1578641 - L1MB7 LINE L1 -1956 4726 3884 1372 199 38 18 chr13 100294507 100294765 -1578404 - L1MB7 LINE L1 -4689 1957 1706 * 1093 196 64 0 chr13 100294765 100294985 -1578184 + MER46A DNA MER2_type 2 235 -1 1372 199 38 18 chr13 100294985 100295306 -1577863 - L1MB7 LINE L1 -4940 1706 1269 238 294 51 62 chr13 100295788 100295965 -1577204 - MIR SINE MIR -70 192 18 394 285 16 8 chr13 100297315 100297438 -1575731 + L1MC4 LINE L1 7919 8042 0 26 0 0 0 chr13 100297536 100297562 -1575607 + AT_rich Low_complexity Low_complexity 1 26 0 236 178 0 22 chr13 100297866 100297911 -1575258 + Alu SINE Alu 118 161 -138 242 167 121 0 chr13 100298466 100298532 -1574637 - L2 LINE L2 -564 2750 2677 289 252 122 0 chr13 100298909 100299016 -1574153 - MIR SINE MIR -70 192 73 180 0 0 0 chr13 100300036 100300056 -1573113 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 7435 45 2 1 chr13 100300442 100301447 -1571722 + L1PA5 LINE L1 5143 6149 -1 198 0 0 0 chr13 100301447 100301469 -1571700 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1380 94 0 0 chr13 100301728 100301908 -1571261 + AluY SINE Alu 129 308 -3 21 36 0 0 chr13 100302133 100302161 -1571008 + AT_rich Low_complexity Low_complexity 1 28 0 2436 72 0 13 chr13 100302708 100303014 -1570155 + AluY SINE Alu 1 302 -9 292 319 20 0 chr13 100303513 100303619 -1569550 + MIR SINE MIR 56 163 -62 2129 139 9 35 chr13 100303701 100304047 -1569122 - MER1B DNA MER1_type 0 337 1 233 241 112 26 chr13 100305703 100305819 -1567350 + LTR33A LTR ERVL 390 515 -8 221 282 82 0 chr13 100307468 100307553 -1565616 - L2 LINE L2 -7 3306 3215 2163 115 7 0 chr13 100311744 100312040 -1561129 + AluSx SINE Alu 1 298 -14 2827 3 0 0 chr13 100312040 100312336 -1560833 + AluYa5 SINE Alu 1 296 -15 325 287 104 6 chr13 100313190 100313354 -1559815 - MIR SINE MIR -51 211 32 2328 68 0 39 chr13 100315437 100315744 -1557425 + AluY SINE Alu 1 295 -16 833 154 0 0 chr13 100316390 100316520 -1556649 + FLAM_A SINE Alu 1 130 -3 2394 81 0 3 chr13 100317508 100317806 -1555363 + AluY SINE Alu 1 297 -14 22 0 0 0 chr13 100318451 100318473 -1554696 + AT_rich Low_complexity Low_complexity 1 22 0 201 121 0 0 chr13 100320915 100320948 -1552221 + (CATA)n Simple_repeat Simple_repeat 3 35 0 557 274 41 104 chr13 100321537 100321979 -1551190 + HAL1 LINE L1 2 415 -2092 234 279 189 18 chr13 100322444 100322555 -1550614 - L2 LINE L2 0 3272 3143 264 284 97 19 chr13 100322901 100323056 -1550113 - L2 LINE L2 -1269 2045 1879 1159 179 10 14 chr13 100323106 100323313 -1549856 + AluSg/x SINE Alu 106 311 -1 2304 111 3 0 chr13 100324658 100324964 -1548205 - AluSx SINE Alu -5 307 1 3208 228 77 36 chr13 100325014 100325122 -1548047 - L1ME2 LINE L1 -9 6549 6447 1875 162 0 10 chr13 100325122 100325424 -1547745 + AluJb SINE Alu 1 299 -13 3208 228 77 36 chr13 100325424 100325592 -1547577 - L1ME2 LINE L1 -111 6447 6287 2050 91 7 14 chr13 100325592 100325868 -1547301 - AluSp SINE Alu -10 303 30 3208 228 77 36 chr13 100325868 100326434 -1546735 - L1ME2 LINE L1 -271 6287 5746 1923 162 0 0 chr13 100326434 100326749 -1546420 - AluJb SINE Alu 0 315 1 3208 228 77 36 chr13 100326749 100327736 -1545433 - L1ME2 LINE L1 -812 5746 4801 2013 128 61 19 chr13 100327736 100328096 -1545073 + THE1C LTR MaLR 1 375 0 3208 228 77 36 chr13 100328096 100328561 -1544608 - L1ME2 LINE L1 -1757 4801 2160 198 71 0 0 chr13 100328564 100328592 -1544577 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1388 98 5 44 chr13 100328592 100328795 -1544374 - AluSg/x SINE Alu -33 279 85 198 0 0 0 chr13 100328802 100328824 -1544345 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 241 220 0 0 chr13 100328826 100328885 -1544284 - L1ME2 LINE L1 -4383 2157 2099 2103 117 3 10 chr13 100328885 100329183 -1543986 + AluSx SINE Alu 1 296 -16 491 257 250 20 chr13 100329424 100329724 -1543445 + L2 LINE L2 2903 3271 -42 289 215 5 89 chr13 100330541 100330732 -1542437 + C-rich Low_complexity Low_complexity 4 178 0 23 33 0 0 chr13 100331519 100331549 -1541620 + GC_rich Low_complexity Low_complexity 1 30 0 239 170 43 0 chr13 100331687 100331734 -1541435 + MLT1H1 LTR MaLR 199 247 -308 328 333 41 18 chr13 100332388 100332559 -1540610 + HERVR LTR ERV1 4079 4216 -3176 2197 83 56 0 chr13 100332916 100333204 -1539965 - AluY SINE Alu -7 304 1 300 151 70 52 chr13 100335126 100335223 -1537946 + L1MC3 LINE L1 6132 7653 -132 977 263 163 33 chr13 100335245 100335815 -1537354 - MER76 LTR ERV -13 675 32 1105 269 106 48 chr13 100335957 100336066 -1537103 + L1 LINE L1 3036 3137 -3009 1913 133 4 0 chr13 100336066 100336337 -1536832 + AluSx SINE Alu 2 273 -39 1105 269 106 48 chr13 100336337 100336348 -1536821 + L1 LINE L1 3137 3146 -3000 1891 133 11 0 chr13 100336348 100336619 -1536550 + AluSx SINE Alu 27 300 -12 1105 269 106 48 chr13 100336619 100337435 -1535734 + L1 LINE L1 3146 4027 -2119 1706 228 69 30 chr13 100337441 100338108 -1535061 - L1MDa LINE L1 -2932 3608 2916 330 135 0 0 chr13 100338221 100338273 -1534896 + (C)n Simple_repeat Simple_repeat 1 52 0 3885 203 109 15 chr13 100338404 100338461 -1534708 - L1MDa LINE L1 -3602 2938 2888 2481 68 0 3 chr13 100338461 100338756 -1534413 - AluY SINE Alu -17 294 1 3885 203 109 15 chr13 100338756 100340084 -1533085 - L1MDa LINE L1 -3652 2888 1416 377 284 97 39 chr13 100340091 100340246 -1532923 + L1ME LINE L1 50 213 -5906 301 339 60 47 chr13 100340578 100340811 -1532358 + L1ME LINE L1 561 796 -5323 593 322 61 24 chr13 100340888 100341605 -1531564 + L1ME LINE L1 925 1668 -4642 790 293 81 46 chr13 100341657 100341924 -1531245 + L1ME LINE L1 1765 2052 -4258 2333 89 0 13 chr13 100341924 100342228 -1530941 + AluSc SINE Alu 2 301 -8 790 293 81 46 chr13 100342228 100342370 -1530799 + L1ME LINE L1 2052 2188 -4122 1631 206 21 21 chr13 100342371 100342754 -1530415 - L1MC3 LINE L1 -446 7339 6957 2149 94 3 47 chr13 100342761 100343079 -1530090 - AluSg SINE Alu -6 304 1 701 182 73 36 chr13 100343103 100343295 -1529874 - L1MC2 LINE L1 -15 6329 6131 21 0 0 0 chr13 100344150 100344171 -1528998 + AT_rich Low_complexity Low_complexity 1 21 0 2041 139 3 10 chr13 100344178 100344480 -1528689 + AluSx SINE Alu 13 312 0 377 309 103 10 chr13 100345207 100345411 -1527758 - MIR SINE MIR -19 243 21 2061 120 3 17 chr13 100346700 100346992 -1526177 + AluSc SINE Alu 2 289 -20 231 303 15 0 chr13 100347077 100347143 -1526026 + GA-rich Low_complexity Low_complexity 4 70 0 1817 191 0 0 chr13 100347556 100347855 -1525314 - AluJb SINE Alu -13 299 1 2318 71 7 7 chr13 100348029 100348347 -1524822 + AluSx SINE Alu 1 318 0 307 221 39 0 chr13 100348862 100348939 -1524230 - MIR SINE MIR -78 130 51 2549 214 42 5 chr13 100350757 100351541 -1521628 + L1MDb LINE L1 776 1588 -4818 447 228 261 5 chr13 100351553 100351737 -1521432 + L1MDb LINE L1 1672 1902 -4504 547 108 14 0 chr13 100351751 100351825 -1521344 + AluS SINE Alu 5 79 -233 13317 114 53 27 chr13 100351925 100353748 -1519421 - Tigger1 DNA MER2_type -96 2322 430 1490 76 7 134 chr13 100353748 100354024 -1519145 - L1PA8A LINE L1 0 6131 5891 13317 114 53 27 chr13 100354024 100354440 -1518729 - Tigger1 DNA MER2_type -1988 430 26 620 251 70 39 chr13 100354512 100354895 -1518274 + HAL1 LINE L1 819 1213 -1294 443 300 56 79 chr13 100356130 100356433 -1516736 + L1MDa LINE L1 28 323 -6217 1659 269 34 5 chr13 100356737 100357327 -1515842 + L1MDa LINE L1 2663 3269 -3271 382 274 147 5 chr13 100357336 100357533 -1515636 + MLT1D LTR MaLR 273 497 -8 2490 81 3 3 chr13 100358442 100358750 -1514419 - AluSx SINE Alu -4 308 1 382 340 76 0 chr13 100359311 100359496 -1513673 - MIR SINE MIR -39 223 25 2463 83 3 0 chr13 100359647 100359948 -1513221 - AluSx SINE Alu -10 302 1 321 278 191 12 chr13 100360811 100360973 -1512196 - HAL1 LINE L1 -1181 1326 1136 2203 106 3 34 chr13 100361004 100361035 -1512134 - AluSx SINE Alu 0 312 282 555 56 0 0 chr13 100361035 100361106 -1512063 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 2203 106 3 34 chr13 100361106 100361395 -1511774 - AluSx SINE Alu -30 282 2 2019 213 104 62 chr13 100361398 100362023 -1511146 - MLT1E1 LTR MaLR 0 654 4 186 133 0 0 chr13 100362669 100362699 -1510470 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr13 100363209 100363230 -1509939 + AT_rich Low_complexity Low_complexity 1 21 0 786 280 103 12 chr13 100364001 100364340 -1508829 + HAL1 LINE L1 1548 1917 -590 266 273 39 0 chr13 100364393 100364470 -1508699 + HAL1 LINE L1 1838 1917 -590 260 270 135 71 chr13 100364523 100364676 -1508493 + HAL1 LINE L1 1838 1980 -527 2552 78 3 0 chr13 100364676 100364985 -1508184 + AluSq SINE Alu 1 310 -3 260 270 135 71 chr13 100364985 100365436 -1507733 + HAL1 LINE L1 1980 2486 -21 2178 111 3 10 chr13 100365436 100365733 -1507436 + AluSx SINE Alu 1 295 -17 260 270 135 71 chr13 100365733 100365757 -1507412 + HAL1 LINE L1 2486 2507 0 21 36 0 0 chr13 100365765 100365793 -1507376 + AT_rich Low_complexity Low_complexity 1 28 0 1918 45 0 0 chr13 100365793 100366015 -1507154 - SVA Other Other -1 1385 1164 3789 45 12 23 chr13 100366115 100366628 -1506541 - SVA Other Other -878 508 2 180 0 0 0 chr13 100366631 100366651 -1506518 + (GGGAGA)n Simple_repeat Simple_repeat 1 20 0 1806 176 3 3 chr13 100368871 100369177 -1503992 - AluJb SINE Alu -6 306 1 1675 102 0 57 chr13 100369178 100369424 -1503745 - AluSg/x SINE Alu -11 301 70 2515 61 0 0 chr13 100369512 100369805 -1503364 + AluY SINE Alu 1 293 -18 1351 165 37 46 chr13 100369830 100370158 -1503011 - L1MB3 LINE L1 -1 6182 5858 2415 100 3 0 chr13 100370310 100370619 -1502550 + AluSg SINE Alu 1 310 0 1274 216 71 48 chr13 100371696 100372117 -1501052 + LTR47B LTR ERVL 13 443 0 301 224 42 200 chr13 100372483 100372575 -1500594 + MER5B DNA MER1_type 40 96 -82 1543 138 116 30 chr13 100372575 100372843 -1500326 - AluJo SINE Alu -21 291 1 301 224 42 200 chr13 100372843 100372915 -1500254 + MER5B DNA MER1_type 96 178 0 2239 136 0 0 chr13 100373154 100373464 -1499705 + AluSx SINE Alu 1 310 -2 552 318 86 16 chr13 100374440 100374805 -1498364 + MLT1E1 LTR MaLR 38 437 -118 1366 189 108 44 chr13 100374911 100375254 -1497915 - MLT1A1 LTR MaLR 0 365 1 511 266 115 28 chr13 100375434 100375720 -1497449 - MLT1L LTR MaLR -148 467 157 246 318 75 40 chr13 100375984 100376236 -1496933 - LTR33 LTR ERVL -5 516 256 277 240 20 10 chr13 100377400 100377500 -1495669 + G-rich Low_complexity Low_complexity 1 101 0 26 88 0 0 chr13 100377802 100377870 -1495299 + GC_rich Low_complexity Low_complexity 1 68 0 21 36 0 0 chr13 100377890 100377918 -1495251 + GC_rich Low_complexity Low_complexity 1 28 0 2425 67 0 3 chr13 100378716 100379015 -1494154 + AluSg SINE Alu 1 298 -12 216 0 0 0 chr13 100379017 100379041 -1494128 + (TG)n Simple_repeat Simple_repeat 2 25 0 218 248 57 0 chr13 100381022 100381127 -1492042 + (GTGTG)n Simple_repeat Simple_repeat 5 115 0 2172 82 0 4 chr13 100381203 100381470 -1491699 + AluSq SINE Alu 1 266 -47 1047 228 28 0 chr13 100381582 100381832 -1491337 + MLT1E1 LTR MaLR 398 654 0 2249 107 3 0 chr13 100381835 100382135 -1491034 + AluSx SINE Alu 2 302 -10 375 23 0 0 chr13 100382135 100382179 -1490990 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 413 118 39 101 chr13 100382196 100382374 -1490795 + GA-rich Low_complexity Low_complexity 4 170 0 201 121 0 0 chr13 100382386 100382419 -1490750 + (GAAA)n Simple_repeat Simple_repeat 2 34 0 2372 82 7 0 chr13 100383267 100383559 -1489610 + AluSq SINE Alu 1 294 -19 530 281 90 0 chr13 100383715 100383882 -1489287 + MIR SINE MIR 38 219 -43 296 301 96 0 chr13 100385608 100385754 -1487415 + MIR SINE MIR 16 175 -87 1990 134 23 10 chr13 100387155 100387460 -1485709 - AluSx SINE Alu -3 309 1 189 0 0 69 chr13 100388291 100388320 -1484849 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1948 129 0 34 chr13 100388320 100388614 -1484555 - AluSx SINE Alu -1 312 1 288 278 9 65 chr13 100390219 100390327 -1482842 - MER94 DNA DNA -32 102 1 2300 41 0 4 chr13 100391140 100391409 -1481760 + AluY SINE Alu 1 268 -43 2332 108 0 0 chr13 100391653 100391959 -1481210 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr13 100391995 100392018 -1481151 + GC_rich Low_complexity Low_complexity 1 23 0 951 251 86 30 chr13 100392694 100393032 -1480137 - MLT1A2 LTR MaLR -17 357 1 671 193 48 0 chr13 100395467 100395612 -1477557 - L1MB4 LINE L1 0 6180 6029 8885 90 12 17 chr13 100396380 100396725 -1476444 + HSMAR1 DNA Mariner 1 346 -941 2329 120 3 0 chr13 100396725 100397034 -1476135 + AluSq SINE Alu 1 310 -3 8885 90 12 17 chr13 100397034 100397982 -1475187 + HSMAR1 DNA Mariner 346 1287 0 5136 77 34 5 chr13 100398735 100399477 -1473692 + MER4E LTR ERV1 3 765 -1 189 0 0 0 chr13 100400562 100400583 -1472586 + (CCCA)n Simple_repeat Simple_repeat 2 22 0 685 171 0 41 chr13 100400918 100401041 -1472128 + FLAM_A SINE Alu 1 118 -15 2411 97 0 0 chr13 100402712 100403011 -1470158 + AluSg SINE Alu 1 299 -11 275 343 30 24 chr13 100403472 100403641 -1469528 + C-rich Low_complexity Low_complexity 2 171 0 314 28 0 0 chr13 100403975 100404011 -1469158 + (A)n Simple_repeat Simple_repeat 1 36 0 1356 217 111 5 chr13 100404773 100405179 -1467990 - L1MB3 LINE L1 -3 6180 5732 354 279 29 0 chr13 100405448 100405620 -1467549 + (CACCT)n Simple_repeat Simple_repeat 4 180 0 2272 115 3 0 chr13 100408013 100408317 -1464852 + AluSq SINE Alu 1 305 -8 2162 114 0 29 chr13 100408890 100409198 -1463971 - AluSq SINE Alu -14 299 1 1355 169 171 33 chr13 100409690 100410117 -1463052 - LTR54B LTR ERV1 -2 496 11 276 324 93 14 chr13 100410133 100410272 -1462897 + L1ME LINE L1 5629 5778 -343 1255 254 38 6 chr13 100410282 100410621 -1462548 - MER4D LTR ERV1 0 903 554 341 167 0 15 chr13 100410700 100410766 -1462403 - MER4B LTR ERV1 -305 305 241 2245 90 0 0 chr13 100410772 100411049 -1462120 - AluSc SINE Alu -7 302 26 543 222 63 0 chr13 100411077 100411203 -1461966 - MER49 LTR ERV1 -763 160 27 1178 188 161 30 chr13 100411209 100411545 -1461624 - LTR51 LTR ERV1 -291 380 1 1074 92 24 9 chr13 100412260 100412433 -1460736 - MER4E LTR ERV1 -3 869 601 1951 118 0 4 chr13 100412551 100412821 -1460348 - AluSq SINE Alu -44 269 1 1160 164 48 0 chr13 100412821 100413029 -1460140 - MER49 LTR ERV1 -705 218 1 248 377 0 0 chr13 100413344 100413458 -1459711 + C-rich Low_complexity Low_complexity 3 116 0 399 319 64 15 chr13 100413458 100413662 -1459507 - MER21B LTR ERV1 -156 707 494 282 263 20 61 chr13 100413971 100414070 -1459099 - MER77 LTR ERV1 -408 197 103 2310 99 3 0 chr13 100416307 100416599 -1456570 - AluSx SINE Alu -15 297 5 199 381 30 22 chr13 100416659 100416793 -1456376 - L2 LINE L2 0 3272 3138 585 224 53 6 chr13 100417274 100417444 -1455725 - MER58A DNA MER1_type 0 224 47 1860 120 8 0 chr13 100420189 100420455 -1452714 - AluSx SINE Alu -12 300 33 452 127 0 0 chr13 100420458 100420521 -1452648 - AluS SINE Alu -246 64 2 196 250 16 0 chr13 100421633 100421761 -1451408 + CT-rich Low_complexity Low_complexity 1 130 0 2125 130 0 3 chr13 100421864 100422171 -1450998 - AluSx SINE Alu -6 306 1 30 59 0 0 chr13 100422990 100423041 -1450128 + AT_rich Low_complexity Low_complexity 1 51 0 439 311 72 21 chr13 100425394 100425629 -1447540 + MIR SINE MIR 3 249 -13 491 259 15 0 chr13 100426033 100426168 -1447001 + L1ME3A LINE L1 5128 5264 -882 294 291 81 0 chr13 100426171 100426275 -1446894 + L1ME3A LINE L1 5492 5608 -558 468 284 150 26 chr13 100426276 100426589 -1446580 + L1ME3A LINE L1 5730 6081 -89 220 183 39 77 chr13 100426779 100426883 -1446286 - L2 LINE L2 -290 2982 2883 307 161 73 88 chr13 100426906 100427043 -1446126 - L2 LINE L2 -539 2775 2641 2247 124 0 3 chr13 100427346 100427644 -1445525 + AluSq SINE Alu 1 297 -16 180 77 0 0 chr13 100427962 100427988 -1445181 + (CCCCCT)n Simple_repeat Simple_repeat 2 27 0 209 362 35 35 chr13 100428127 100428268 -1444901 + L2 LINE L2 3124 3264 -8 3791 203 34 26 chr13 100428275 100429379 -1443790 + L1MB7 LINE L1 5043 6136 -48 225 0 0 0 chr13 100429379 100429404 -1443765 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 264 77 0 0 chr13 100429403 100429442 -1443727 + (TA)n Simple_repeat Simple_repeat 2 40 0 3791 203 34 26 chr13 100429404 100429442 -1443727 + L1MB7 LINE L1 6136 6156 -28 2154 89 25 0 chr13 100429442 100429723 -1443446 - AluSx SINE Alu -24 288 1 3791 203 34 26 chr13 100429723 100429742 -1443427 + L1MB7 LINE L1 6156 6173 -11 349 375 25 0 chr13 100434074 100434234 -1438935 + MIR SINE MIR 88 251 -11 2290 94 3 0 chr13 100434327 100434614 -1438555 - AluSx SINE Alu -24 288 1 1026 251 41 10 chr13 100435015 100435586 -1437583 - L1MB2 LINE L1 -2 6169 5501 505 218 150 39 chr13 100435700 100435796 -1437373 - L1MB2 LINE L1 -651 5527 5443 1540 176 26 64 chr13 100435796 100436108 -1437061 - AluJo SINE Alu -12 300 1 505 218 150 39 chr13 100436108 100436247 -1436922 - L1MB2 LINE L1 -735 5443 5272 2181 112 3 10 chr13 100436804 100437108 -1436061 + AluSx SINE Alu 1 302 -10 1623 128 147 3 chr13 100437172 100437484 -1435685 + MER46B DNA MER2_type 5 236 0 1822 195 0 0 chr13 100437613 100437916 -1435253 - AluJo SINE Alu -9 303 1 221 218 282 18 chr13 100440162 100440272 -1432897 - MIR SINE MIR -10 252 114 342 312 57 9 chr13 100440479 100440622 -1432547 - L1M LINE L1 -2382 5403 5254 1911 118 7 0 chr13 100440639 100440938 -1432231 + AluSx SINE Alu 12 312 0 678 171 125 26 chr13 100440991 100441143 -1432026 - AluJb SINE Alu -23 289 123 505 294 96 66 chr13 100442505 100442935 -1430234 - L1MC/D LINE L1 -636 5530 5263 21 0 0 0 chr13 100442970 100442991 -1430178 + AT_rich Low_complexity Low_complexity 1 21 0 219 325 41 41 chr13 100443663 100443786 -1429383 - MIR SINE MIR -80 182 60 595 268 42 5 chr13 100444320 100444510 -1428659 - MER58 DNA MER1_type -2223 197 1 280 279 146 55 chr13 100447070 100447235 -1425934 - MER63 DNA MER1_type -39 1021 842 2206 101 3 0 chr13 100447461 100447759 -1425410 - AluSx SINE Alu -13 299 1 2581 48 0 0 chr13 100447810 100448120 -1425049 - AluY SINE Alu -1 310 1 2247 184 44 42 chr13 100450301 100450987 -1422182 + Tigger7 DNA MER2_type 10 2479 -8 331 172 43 43 chr13 100450975 100451068 -1422101 + Tigger7 DNA MER2_type 2387 2479 -8 * 323 172 43 43 chr13 100451056 100451149 -1422020 + Tigger7 DNA MER2_type 2391 2483 -8 * 5263 135 41 12 chr13 100452589 100453434 -1419735 + MER4D LTR ERV1 1 870 -2 1471 78 11 0 chr13 100455607 100455798 -1417371 - MER107 DNA MER1_type 0 197 5 2570 178 170 29 chr13 100460988 100461616 -1411553 - LTR62 LTR ERVK -2 717 1 735 175 44 12 chr13 100461808 100461968 -1411201 - L1MB8 LINE L1 -9 6169 6005 438 236 20 118 chr13 100461974 100462177 -1410992 - L1MB8 LINE L1 -126 6052 5870 306 241 263 0 chr13 100462187 100462320 -1410849 - L1MB8 LINE L1 -748 5422 5255 799 290 65 0 chr13 100462362 100462600 -1410569 + REP3 LTR ERV 1 265 -297 243 0 0 0 chr13 100462600 100462627 -1410542 + (CCCTG)n Simple_repeat Simple_repeat 3 29 0 799 290 65 0 chr13 100462627 100462698 -1410471 + REP3 LTR ERV 265 330 -232 368 223 121 89 chr13 100464953 100465110 -1408059 + L1MC4 LINE L1 7876 8037 -5 250 271 0 0 chr13 100465255 100465314 -1407855 + MER89 LTR ERV1 256 314 -245 2017 136 0 3 chr13 100465987 100466295 -1406874 - AluSx SINE Alu -5 307 1 2154 97 0 3 chr13 100466682 100466971 -1406198 + AluSx SINE Alu 1 288 -24 524 267 17 0 chr13 100467858 100467974 -1405195 + FAM SINE Alu 4 121 -64 1952 115 34 3 chr13 100469033 100469329 -1403840 + AluSx SINE Alu 2 306 -6 488 216 29 36 chr13 100469547 100469686 -1403483 - L1MB7 LINE L1 -8 6176 6039 247 306 20 0 chr13 100469908 100470006 -1403163 - L1MB7 LINE L1 -398 5776 5677 1754 108 25 21 chr13 100470432 100470739 -1402430 - AluSx SINE Alu 0 309 2 494 70 0 0 chr13 100471114 100471185 -1401984 + MER41A LTR ERV1 399 469 -85 1981 187 112 7 chr13 100473391 100473830 -1399339 - MER66B LTR ERV1 -1 485 1 2428 49 3 3 chr13 100473920 100474224 -1398945 - AluY SINE Alu -7 304 1 360 292 23 23 chr13 100482412 100482542 -1390627 - MIR SINE MIR -49 213 84 1965 130 3 3 chr13 100482607 100482900 -1390269 - AluSx SINE Alu -15 297 5 2066 113 3 16 chr13 100483989 100484300 -1388869 + AluSg SINE Alu 1 307 -3 2200 96 0 3 chr13 100484364 100484665 -1388504 + AluSx SINE Alu 2 301 -11 242 354 67 12 chr13 100484797 100484961 -1388208 - L1MC5 LINE L1 -65 7896 7724 314 361 31 0 chr13 100485245 100485375 -1387794 - MIR SINE MIR -122 140 7 1161 200 71 42 chr13 100485657 100486107 -1387062 + MLT1D LTR MaLR 1 505 0 1856 220 76 19 chr13 100486240 100486381 -1386788 + L1MCa LINE L1 1090 1222 -5385 1964 101 3 71 chr13 100486381 100486707 -1386462 + AluSq SINE Alu 1 304 -9 1856 220 76 19 chr13 100486707 100487243 -1385926 + L1MCa LINE L1 1222 1997 -4610 1262 189 15 115 chr13 100487261 100487653 -1385516 - MLT1A1 LTR MaLR -12 353 1 716 167 8 0 chr13 100487692 100487812 -1385357 - FLAM_C SINE Alu -1 142 22 301 200 0 0 chr13 100487826 100487886 -1385283 + L1MCa LINE L1 1932 1991 -4435 3622 258 52 13 chr13 100487902 100488703 -1384466 + L1MCa LINE L1 2053 2822 -3604 1590 176 153 23 chr13 100488703 100489101 -1384068 - LTR7 LTR ERV1 0 450 1 3622 258 52 13 chr13 100489101 100490578 -1382591 + L1MCa LINE L1 2822 4456 -1970 720 235 12 6 chr13 100490563 100490729 -1382440 + L1M4 LINE L1 4010 4176 -1970 * 3671 226 48 59 chr13 100490714 100491464 -1381705 + L1M4 LINE L1 4010 4742 -1404 2445 80 0 6 chr13 100491464 100491775 -1381394 + AluY SINE Alu 1 309 -2 3671 226 48 59 chr13 100491775 100492290 -1380879 + L1M4 LINE L1 4742 5261 -885 201 315 0 0 chr13 100493076 100493130 -1380039 + CT-rich Low_complexity Low_complexity 2 55 0 251 266 125 0 chr13 100493268 100493332 -1379837 + MIR SINE MIR 8 79 -183 203 171 0 0 chr13 100493988 100494029 -1379140 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 251 268 80 27 chr13 100494074 100494186 -1378983 - L1MC5 LINE L1 -232 7729 7612 1894 135 23 23 chr13 100494250 100494589 -1378580 - AluSx SINE Alu 0 312 1 422 215 91 101 chr13 100495310 100495344 -1377825 + MLT1C LTR MaLR 65 98 -369 2394 100 0 0 chr13 100495344 100495644 -1377525 + AluSc SINE Alu 1 300 -9 422 215 91 101 chr13 100495644 100495744 -1377425 + MLT1C LTR MaLR 98 197 -270 2109 118 24 0 chr13 100495744 100496040 -1377129 + AluSx SINE Alu 1 303 -9 507 17 0 0 chr13 100496045 100496105 -1377064 + (CA)n Simple_repeat Simple_repeat 2 61 0 422 215 91 101 chr13 100496105 100496182 -1376987 + MLT1C LTR MaLR 201 281 -186 241 408 0 0 chr13 100496182 100496334 -1376835 + (ATGGTG)n Simple_repeat Simple_repeat 6 157 0 494 311 32 5 chr13 100496595 100496785 -1376384 + MLT1C LTR MaLR 263 457 -10 2048 87 0 11 chr13 100497207 100497472 -1375697 - AluSx SINE Alu -16 296 35 2098 139 0 3 chr13 100498555 100498857 -1374312 - AluSg SINE Alu -4 306 6 2444 91 7 0 chr13 100499501 100499809 -1373360 - AluSx SINE Alu -2 310 1 250 288 0 0 chr13 100499823 100499889 -1373280 - L2 LINE L2 0 3313 3248 2326 115 0 0 chr13 100500837 100501149 -1372020 + AluSx SINE Alu 1 312 0 327 244 67 0 chr13 100501223 100501313 -1371856 + MIR3 SINE MIR 78 173 -35 2802 108 137 69 chr13 100503517 100504079 -1369090 - MER4A LTR ERV1 0 600 1 253 174 159 0 chr13 100504395 100504464 -1368705 - MER116 DNA Mariner 0 80 1 784 268 91 41 chr13 100504605 100505022 -1368147 + L1MC/D LINE L1 3274 3728 -2418 2201 89 11 0 chr13 100505022 100505326 -1367843 + AluSx SINE Alu 1 307 0 2013 113 41 3 chr13 100505666 100505957 -1367212 + AluSx SINE Alu 1 302 -10 285 301 101 39 chr13 100506225 100506511 -1366658 + L1MC/D LINE L1 5496 5799 -2009 2186 65 11 22 chr13 100506515 100506790 -1366379 - AluSq SINE Alu -4 309 38 21 0 0 0 chr13 100507315 100507336 -1365833 + AT_rich Low_complexity Low_complexity 1 21 0 975 66 26 46 chr13 100507349 100507500 -1365669 + LTR9 LTR ERV1 1 148 -464 1146 47 0 0 chr13 100507537 100507687 -1365482 + AluSg/x SINE Alu 156 305 0 342 0 0 0 chr13 100508192 100508230 -1364939 + (CA)n Simple_repeat Simple_repeat 1 38 0 301 210 25 12 chr13 100508746 100508827 -1364342 + MER81 DNA DNA 7 88 -26 244 276 52 0 chr13 100509847 100509963 -1363206 - MER20B DNA MER1_type -41 742 621 1009 174 99 19 chr13 100510005 100510217 -1362952 - Tigger2 DNA MER2_type -38 2680 2452 3572 154 40 58 chr13 100510280 100510637 -1362532 - Tigger2 DNA MER2_type -1974 744 382 2321 107 0 3 chr13 100510637 100510947 -1362222 - AluY SINE Alu -1 310 2 3572 154 40 58 chr13 100510947 100510995 -1362174 - Tigger2 DNA MER2_type -2336 382 335 320 0 0 24 chr13 100510995 100511036 -1362133 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2191 105 0 0 chr13 100511040 100511316 -1361853 - AluSx SINE Alu -36 276 1 3572 154 40 58 chr13 100511316 100511662 -1361507 - Tigger2 DNA MER2_type -2386 332 1 250 121 35 0 chr13 100511705 100511763 -1361406 - L1MA7 LINE L1 0 6291 6232 336 100 83 0 chr13 100511764 100511824 -1361345 - MER41B LTR ERV1 -88 547 483 5882 146 56 15 chr13 100511826 100512970 -1360199 - L1MA6 LINE L1 -45 6255 4977 2409 96 0 0 chr13 100512970 100513271 -1359898 - AluY SINE Alu -9 302 2 5882 146 56 15 chr13 100513271 100514090 -1359079 - L1MA6 LINE L1 -1323 4977 4193 2251 113 7 0 chr13 100514217 100514510 -1358659 + AluSx SINE Alu 1 295 -17 2160 107 7 39 chr13 100514514 100514822 -1358347 + AluSq SINE Alu 1 298 -15 346 256 302 0 chr13 100514823 100515038 -1358131 - MER20B DNA MER1_type -497 286 7 409 265 184 0 chr13 100515365 100515501 -1357668 + MER5A DNA MER1_type 29 189 0 261 254 0 0 chr13 100516454 100516568 -1356601 + (TG)n Simple_repeat Simple_repeat 2 115 0 222 269 0 0 chr13 100516600 100516734 -1356435 + (TG)n Simple_repeat Simple_repeat 1 134 0 384 258 0 0 chr13 100516747 100517153 -1356016 + (TG)n Simple_repeat Simple_repeat 1 406 0 526 286 0 5 chr13 100517211 100517633 -1355536 + (TG)n Simple_repeat Simple_repeat 1 419 0 309 259 0 0 chr13 100517649 100517823 -1355346 + (TG)n Simple_repeat Simple_repeat 1 174 0 2298 246 39 58 chr13 100518050 100518924 -1354245 + L1M4 LINE L1 3366 4222 -1924 2282 96 14 10 chr13 100519046 100519339 -1353830 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr13 100519348 100519369 -1353800 + AT_rich Low_complexity Low_complexity 1 21 0 1950 121 86 0 chr13 100520299 100520579 -1352590 + AluSx SINE Alu 1 304 -8 309 196 0 51 chr13 100521147 100521285 -1351884 + CT-rich Low_complexity Low_complexity 4 134 0 2123 93 58 0 chr13 100522252 100522543 -1350626 + AluSc SINE Alu 1 308 -1 204 81 0 54 chr13 100523488 100523525 -1349644 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1071 232 63 14 chr13 100523596 100523945 -1349224 - L1MB7 LINE L1 -130 6054 5689 706 263 81 0 chr13 100524406 100524592 -1348577 - MER6B DNA MER2_type -3 207 7 214 258 141 70 chr13 100525880 100526008 -1347161 + L2 LINE L2 3172 3308 -5 223 191 32 0 chr13 100527390 100527453 -1345716 + CT-rich Low_complexity Low_complexity 4 68 0 766 198 13 13 chr13 100527633 100527790 -1345379 + FAM SINE Alu 2 158 -17 405 0 0 0 chr13 100527894 100527939 -1345230 + (CA)n Simple_repeat Simple_repeat 2 46 0 2140 121 3 10 chr13 100528342 100528640 -1344529 - AluSg SINE Alu -14 296 1 839 136 32 7 chr13 100528646 100528801 -1344368 - L1MA4 LINE L1 -2 6298 6140 2125 248 78 21 chr13 100529947 100530778 -1342391 - L1MD1 LINE L1 0 6242 5459 2200 113 3 22 chr13 100530778 100531097 -1342072 - AluSq SINE Alu 0 313 1 2125 248 78 21 chr13 100531097 100531679 -1341490 - L1MD1 LINE L1 -783 5459 4561 261 276 8 39 chr13 100533138 100533265 -1339904 - L1MA9 LINE L1 -30 6282 6160 256 289 33 0 chr13 100533382 100533472 -1339697 - L1MA9 LINE L1 -222 6090 5998 245 218 154 13 chr13 100534682 100534760 -1338409 + MIR SINE MIR 104 192 -70 611 220 38 10 chr13 100535391 100535560 -1337609 + MER5A DNA MER1_type 9 172 -6 1979 137 14 0 chr13 100538034 100538344 -1334825 - AluSx SINE Alu 0 314 1 222 296 99 0 chr13 100539036 100539107 -1334062 + L2 LINE L2 3193 3270 -43 805 198 45 17 chr13 100539323 100539500 -1333669 + AluJo SINE Alu 124 305 -7 254 250 64 70 chr13 100539594 100539750 -1333419 - MER5A DNA MER1_type -34 155 1 22 0 0 0 chr13 100540144 100540166 -1333003 + AT_rich Low_complexity Low_complexity 1 22 0 798 240 188 7 chr13 100540547 100540835 -1332334 + MER2 DNA MER2_type 1 340 -5 218 163 41 0 chr13 100541731 100541780 -1331389 + CT-rich Low_complexity Low_complexity 4 54 0 410 318 74 11 chr13 100544031 100544207 -1328962 + MIR SINE MIR 40 226 -36 3080 176 71 10 chr13 100546004 100546693 -1326476 + L1 LINE L1 3678 4408 -1738 214 291 164 37 chr13 100546746 100546880 -1326289 + MIR SINE MIR 112 262 0 2311 114 0 3 chr13 100547025 100547332 -1325837 + AluSx SINE Alu 1 306 -6 296 71 48 0 chr13 100547395 100547437 -1325732 - Tigger4(Zombi) DNA MER2_type 0 2731 2688 406 255 8 4 chr13 100548502 100548771 -1324398 + (CA)n Simple_repeat Simple_repeat 1 270 0 351 291 9 0 chr13 100548787 100548897 -1324272 + (CA)n Simple_repeat Simple_repeat 1 111 0 327 212 0 60 chr13 100556855 100557039 -1316130 + C-rich Low_complexity Low_complexity 5 177 0 302 246 0 68 chr13 100557096 100557287 -1315882 + C-rich Low_complexity Low_complexity 2 179 0 295 342 49 39 chr13 100561041 100561348 -1311821 - L1ME2 LINE L1 -10 6548 6239 238 270 40 0 chr13 100562411 100562511 -1310658 - L1ME2 LINE L1 -358 6200 6097 232 362 141 0 chr13 100562711 100563001 -1310168 - L1MEc LINE L1 -5063 1333 1003 323 326 45 0 chr13 100563237 100563369 -1309800 - L1MEc LINE L1 -5615 781 644 285 278 74 25 chr13 100563532 100563694 -1309475 - L1MEc LINE L1 -6035 361 192 226 177 25 114 chr13 100563705 100563784 -1309385 - L1MD3 LINE L1 -14 7981 7910 4437 238 55 38 chr13 100563785 100564319 -1308850 - L1ME2 LINE L1 -1000 5540 5017 1619 188 10 27 chr13 100564319 100564617 -1308552 + AluJo SINE Alu 1 293 -19 4437 238 55 38 chr13 100564617 100565201 -1307968 - L1ME2 LINE L1 -1523 5017 4387 2403 98 0 0 chr13 100565201 100565498 -1307671 - AluSq SINE Alu -11 302 6 4437 238 55 38 chr13 100565498 100565837 -1307332 - L1ME2 LINE L1 -2153 4387 4056 421 254 15 15 chr13 100565812 100565942 -1307227 - L1ME2 LINE L1 -6410 130 1 * 242 356 132 35 chr13 100566194 100566368 -1306801 - L2 LINE L2 0 3272 3082 1771 194 0 10 chr13 100568034 100568338 -1304831 - AluJo SINE Alu -11 301 1 1413 178 38 34 chr13 100569454 100569718 -1303451 + AluJo SINE Alu 1 265 -47 216 162 0 0 chr13 100569726 100569763 -1303406 + CT-rich Low_complexity Low_complexity 2 38 0 326 187 27 0 chr13 100569763 100569838 -1303331 + (CATA)n Simple_repeat Simple_repeat 2 78 0 209 292 28 0 chr13 100569902 100569974 -1303195 - L3b LINE CR1 -196 1387 1314 2020 106 102 0 chr13 100571774 100572057 -1301112 - AluSx SINE Alu 0 312 1 1589 243 41 50 chr13 100575017 100575572 -1297597 + MER44D DNA MER2_type 1 605 0 2480 116 8 0 chr13 100577528 100577889 -1295280 - THE1B LTR MaLR 0 364 1 823 217 41 83 chr13 100577889 100578179 -1294990 - L1MD2 LINE L1 -6 6353 6076 1302 143 40 24 chr13 100582339 100582590 -1290579 + L1PA16 LINE L1 5911 6165 -1 2238 97 0 0 chr13 100583262 100583567 -1289602 - AluSc SINE Alu 0 305 1 328 328 24 0 chr13 100583760 100583885 -1289284 - MER5A DNA MER1_type -3 186 59 2388 95 0 0 chr13 100585665 100585971 -1287198 - AluY SINE Alu -5 306 1 25 0 0 0 chr13 100585981 100586006 -1287163 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr13 100586378 100586405 -1286764 + (TG)n Simple_repeat Simple_repeat 2 28 0 569 316 15 15 chr13 100586923 100587129 -1286040 + L3 LINE CR1 603 808 -769 1667 195 81 11 chr13 100587336 100587706 -1285463 - MSTD LTR MaLR 0 396 1 2375 88 0 7 chr13 100587928 100588233 -1284936 - AluY SINE Alu -8 303 1 294 355 79 0 chr13 100589579 100589731 -1283438 - MIR SINE MIR -84 178 15 1932 163 131 13 chr13 100591111 100591492 -1281677 - MSTA LTR MaLR -2 426 1 180 319 0 0 chr13 100591725 100591772 -1281397 + MIR SINE MIR 30 76 -132 2133 97 0 3 chr13 100592771 100593059 -1280110 - AluSg SINE Alu -23 287 1 2209 91 7 0 chr13 100594711 100594998 -1278171 + AluSx SINE Alu 1 289 -23 2209 91 7 0 chr13 100597274 100597561 -1275608 + AluSx SINE Alu 1 289 -23 330 363 77 32 chr13 100598726 100598974 -1274195 - L2 LINE L2 -14 3258 3000 216 263 127 42 chr13 100599339 100599457 -1273712 - L2 LINE L2 -609 2705 2578 187 361 0 0 chr13 100600135 100600196 -1272973 + L2 LINE L2 3196 3256 -16 187 361 111 9 chr13 100601507 100601615 -1271554 + MER5A DNA MER1_type 6 124 -65 186 367 33 22 chr13 100601543 100601633 -1271536 - MER5A DNA MER1_type -40 149 59 * 224 193 187 0 chr13 100607950 100608100 -1265069 + (TCCCG)n Simple_repeat Simple_repeat 2 179 0 239 394 18 6 chr13 100609968 100610138 -1263031 + (CA)n Simple_repeat Simple_repeat 1 172 0 350 331 14 9 chr13 100610275 100610654 -1262515 + (CA)n Simple_repeat Simple_repeat 1 381 0 623 227 14 0 chr13 100614548 100614689 -1258480 - MLT1B LTR MaLR -247 143 1 212 318 0 0 chr13 100615300 100615366 -1257803 + L2 LINE L2 1750 1815 -1499 250 371 84 30 chr13 100615474 100615676 -1257493 + L2 LINE L2 3084 3296 -17 248 194 0 48 chr13 100619092 100619154 -1254015 + G-rich Low_complexity Low_complexity 3 61 0 281 68 14 68 chr13 100619219 100619292 -1253877 + (CCCCG)n Simple_repeat Simple_repeat 1 69 0 224 238 0 50 chr13 100619371 100619472 -1253697 + G-rich Low_complexity Low_complexity 5 100 0 216 97 0 0 chr13 100622878 100622909 -1250260 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 2138 95 3 0 chr13 100626053 100626348 -1246821 - AluSq SINE Alu -6 307 12 385 145 17 26 chr13 100629033 100629150 -1244019 + (TTAGGG)n Simple_repeat Simple_repeat 1 116 0 890 184 45 0 chr13 100629815 100629994 -1243175 - L1MB3 LINE L1 -1 6182 5996 1530 215 39 24 chr13 100629994 100630403 -1242766 - LTR10B LTR ERV1 0 505 91 836 327 190 40 chr13 100630506 100630613 -1242556 - L1M4 LINE L1 -2225 3921 3831 2111 112 0 7 chr13 100630613 100630917 -1242252 - AluSx SINE Alu -10 302 1 836 327 190 40 chr13 100630917 100632240 -1240929 - L1M4 LINE L1 -2315 3831 2241 2247 70 0 33 chr13 100632240 100632582 -1240587 - AluY SINE Alu 0 332 1 836 327 190 40 chr13 100632582 100632658 -1240511 - L1M4 LINE L1 -3905 2241 2178 22 35 0 0 chr13 100633933 100633962 -1239207 + AT_rich Low_complexity Low_complexity 1 29 0 2701 7 0 0 chr13 100633971 100634270 -1238899 + AluYa5 SINE Alu 1 299 -12 537 296 193 0 chr13 100636048 100636379 -1236790 - L2 LINE L2 -762 2552 2158 298 301 194 6 chr13 100636393 100636728 -1236441 - L2 LINE L2 -1619 1695 1298 523 328 40 15 chr13 100637077 100637275 -1235894 + L1MC4a LINE L1 3115 3317 -2829 2015 76 4 36 chr13 100637282 100637559 -1235610 - AluY SINE Alu -43 268 1 22 0 0 0 chr13 100637561 100637583 -1235586 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr13 100637583 100637606 -1235563 + (CAA)n Simple_repeat Simple_repeat 2 24 0 247 300 124 32 chr13 100637902 100638050 -1235119 + L1MC4a LINE L1 4749 4882 -1264 2304 91 0 0 chr13 100638050 100638348 -1234821 - AluY SINE Alu -13 298 1 247 300 124 32 chr13 100638348 100638732 -1234437 + L1MC4a LINE L1 4882 5330 -816 243 356 67 0 chr13 100639095 100639230 -1233939 + L1MC4a LINE L1 5808 5951 -1857 183 222 0 0 chr13 100639377 100639422 -1233747 + GA-rich Low_complexity Low_complexity 3 47 0 371 179 28 0 chr13 100640145 100640290 -1232879 + (CA)n Simple_repeat Simple_repeat 1 149 0 31 26 0 0 chr13 100640466 100640504 -1232665 + GC_rich Low_complexity Low_complexity 1 38 0 732 240 80 0 chr13 100643236 100643411 -1229758 - MER5A DNA MER1_type 0 189 1 974 139 0 11 chr13 100643518 100643698 -1229471 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 801 162 9 9 chr13 100643711 100643933 -1229236 + (TGGA)n Simple_repeat Simple_repeat 1 222 0 452 200 8 0 chr13 100643945 100644075 -1229094 + (TGGA)n Simple_repeat Simple_repeat 3 133 0 296 94 19 0 chr13 100644188 100644241 -1228928 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 544 236 169 26 chr13 100646728 100646923 -1226246 + MIR SINE MIR 16 238 -24 366 61 0 0 chr13 100647538 100647587 -1225582 + (TG)n Simple_repeat Simple_repeat 2 50 0 1629 114 0 0 chr13 100649224 100649472 -1223697 + AluSx SINE Alu 55 302 0 198 0 0 0 chr13 100654316 100654338 -1218831 + (CTGGGG)n Simple_repeat Simple_repeat 6 27 0 2189 102 3 10 chr13 100655613 100655916 -1217253 - AluSx SINE Alu -11 301 1 502 34 0 0 chr13 100656844 100656903 -1216266 - AluY SINE Alu -28 284 226 1255 14 0 0 chr13 100656903 100657042 -1216127 - AluY SINE Alu -172 139 1 241 146 24 0 chr13 100657374 100657415 -1215754 - L1MC3 LINE L1 -1709 6076 6035 1229 154 130 27 chr13 100657439 100657732 -1215437 + L1MC2 LINE L1 6020 6342 -2 193 228 69 89 chr13 100658764 100658865 -1214304 - MIR3 SINE MIR -23 185 87 697 295 34 21 chr13 100659022 100659256 -1213913 + L1ME1 LINE L1 1 237 -6303 690 138 9 0 chr13 100659272 100659381 -1213788 - MSTD LTR MaLR -13 383 274 439 180 110 0 chr13 100659427 100659527 -1213642 - MSTD LTR MaLR -254 111 1 3590 245 124 38 chr13 100659527 100660804 -1212365 - MSTD-int LTR MaLR 0 1651 266 * 6332 236 43 24 chr13 100660792 100661040 -1212129 + L1ME1 LINE L1 3321 3563 -3073 1920 124 15 0 chr13 100661040 100661313 -1211856 + AluSx SINE Alu 1 277 -35 6332 236 43 24 chr13 100661313 100664141 -1209028 + L1ME1 LINE L1 3563 6622 -14 223 253 101 0 chr13 100667410 100667489 -1205680 + L2 LINE L2 3202 3288 -25 740 243 111 4 chr13 100667703 100667929 -1205240 - MIR SINE MIR -8 254 5 561 138 138 6 chr13 100670174 100670333 -1202836 - HsTC2 DNA Tc2 -112 1786 1607 720 281 24 30 chr13 100670474 100670843 -1202326 - MLT2C2 LTR ERVL -14 383 21 1491 212 124 6 chr13 100672388 100672742 -1200427 - MSTD LTR MaLR 0 396 1 922 214 211 0 chr13 100672877 100673181 -1199988 - MLT1D LTR MaLR 0 505 138 477 244 0 0 chr13 100674270 100674430 -1198739 + (CA)n Simple_repeat Simple_repeat 2 161 0 378 278 0 0 chr13 100674469 100674649 -1198520 + (CA)n Simple_repeat Simple_repeat 1 180 0 525 249 76 32 chr13 100675904 100676089 -1197080 + MLT1C LTR MaLR 1 193 -274 24 0 0 0 chr13 100676396 100676420 -1196749 + GC_rich Low_complexity Low_complexity 1 24 0 272 300 60 27 chr13 100676809 100676959 -1196210 + L1ME LINE L1 5590 5744 -377 21 36 0 0 chr13 100677139 100677167 -1196002 + AT_rich Low_complexity Low_complexity 1 28 0 206 240 20 0 chr13 100677428 100677478 -1195691 + CT-rich Low_complexity Low_complexity 2 52 0 268 295 129 22 chr13 100678293 100678432 -1194737 + MIR SINE MIR 81 234 -28 1429 202 101 9 chr13 100678551 100678887 -1194282 - MLT2D LTR ERVL -47 367 1 580 188 94 29 chr13 100679103 100679273 -1193896 + MER5A DNA MER1_type 1 181 -8 320 221 0 70 chr13 100679586 100679672 -1193497 - LTR10B LTR ERV1 -467 80 1 1443 218 105 3 chr13 100679672 100679755 -1193414 - L1MB3 LINE L1 -185 5998 5916 567 336 65 12 chr13 100679755 100680079 -1193090 - L1ME3 LINE L1 -278 5884 5544 204 222 0 0 chr13 100680564 100680600 -1192569 + (CA)n Simple_repeat Simple_repeat 2 37 0 1816 114 33 0 chr13 100682813 100683120 -1190049 - AluY SINE Alu 0 316 1 1965 132 0 16 chr13 100683727 100684037 -1189132 - AluSx SINE Alu -7 305 1 318 326 50 17 chr13 100684316 100684555 -1188614 + L1ME LINE L1 5532 5778 -343 344 267 127 64 chr13 100686175 100686411 -1186758 - L1MC5 LINE L1 -519 7442 7192 2166 96 0 7 chr13 100686411 100686713 -1186456 - AluY SINE Alu -11 300 1 362 109 0 31 chr13 100686772 100686836 -1186333 + MADE1 DNA Mariner 19 80 0 1319 241 58 27 chr13 100686837 100687247 -1185922 - L1MC4 LINE L1 -267 7775 7353 628 312 88 26 chr13 100687531 100688934 -1184235 + L1ME3 LINE L1 4245 6141 -21 336 313 84 24 chr13 100688948 100689197 -1183972 + L1MC5 LINE L1 5103 5366 -780 292 244 151 0 chr13 100689197 100689283 -1183886 + L1MA7 LINE L1 5714 5812 -479 1132 191 30 21 chr13 100689749 100689985 -1183184 + L1MA7 LINE L1 5782 6019 -272 790 169 154 0 chr13 100689984 100690185 -1182984 + L1MA8 LINE L1 6060 6291 0 * 500 292 183 8 chr13 100690183 100690423 -1182746 + L1MC5 LINE L1 5383 5664 -2144 * 418 272 112 5 chr13 100690454 100690701 -1182468 + L1MC5 LINE L1 6545 6922 -992 1067 272 19 60 chr13 100690814 100691394 -1181775 + L1MC5 LINE L1 7292 7847 -114 6258 209 87 92 chr13 100693117 100693821 -1179348 + L1MC3 LINE L1 5385 6091 -1694 2127 107 0 0 chr13 100693821 100694110 -1179059 + AluSx SINE Alu 18 306 -6 6258 209 87 92 chr13 100694110 100695817 -1177352 + L1MC3 LINE L1 6091 7784 -1 1993 159 0 6 chr13 100695898 100696238 -1176931 + AluSx SINE Alu 1 312 0 254 277 60 24 chr13 100696812 100696895 -1176274 - MIR SINE MIR -64 198 113 562 236 174 0 chr13 100697574 100697705 -1175464 - MER5A DNA MER1_type 0 189 24 234 0 0 0 chr13 100697705 100697731 -1175438 + (CTG)n Simple_repeat Simple_repeat 1 26 0 562 236 174 0 chr13 100697731 100697760 -1175409 - MER5A DNA MER1_type -165 24 1 1734 183 57 42 chr13 100698161 100698253 -1174916 + MLT1C LTR MaLR 8 97 -370 2027 182 14 19 chr13 100698253 100698415 -1174754 + MER47A DNA MER2_type 1 162 -2161 2240 86 3 3 chr13 100698415 100698706 -1174463 - AluSx SINE Alu -21 291 1 2027 182 14 19 chr13 100698706 100698911 -1174258 + MER47A DNA MER2_type 162 366 0 1734 183 57 42 chr13 100698911 100699147 -1174022 + MLT1C LTR MaLR 97 347 -120 2334 104 0 0 chr13 100699147 100699455 -1173714 + AluSx SINE Alu 1 308 -4 1734 183 57 42 chr13 100699455 100699578 -1173591 + MLT1C LTR MaLR 347 467 0 1015 201 84 0 chr13 100699908 100700147 -1173022 + MER2 DNA MER2_type 75 333 -12 1961 112 0 4 chr13 100700199 100700477 -1172692 - AluSx SINE Alu -8 304 28 1810 137 10 0 chr13 100700611 100700918 -1172251 - MER101 LTR ERV1 0 474 165 380 229 0 0 chr13 100700938 100701072 -1172097 - MER101 LTR ERV1 -200 370 165 245 155 0 56 chr13 100701063 100701134 -1172035 - MER101 LTR ERV1 -235 239 173 * 426 231 0 0 chr13 100701152 100701256 -1171913 - MER101 LTR ERV1 -206 268 165 306 232 0 0 chr13 100701257 100701356 -1171813 - MER101 LTR ERV1 -211 263 165 240 185 0 0 chr13 100701358 100701423 -1171746 - MER101 LTR ERV1 -240 234 170 967 201 82 0 chr13 100701424 100701668 -1171501 - MER101 LTR ERV1 -210 264 1 626 248 35 80 chr13 100702420 100702646 -1170523 - MER20 DNA MER1_type -3 216 1 1869 129 31 0 chr13 100702863 100703150 -1170019 + AluSx SINE Alu 1 296 -16 246 145 60 12 chr13 100704474 100704557 -1168612 + (TA)n Simple_repeat Simple_repeat 1 87 0 457 291 58 25 chr13 100704677 100704800 -1168369 - MER20B DNA MER1_type -298 485 367 8462 34 30 1 chr13 100704800 100705779 -1167390 + LTR13 LTR ERVK 1 1007 0 457 291 58 25 chr13 100705779 100705930 -1167239 - MER20B DNA MER1_type -416 367 202 25 0 0 0 chr13 100706632 100706657 -1166512 + GC_rich Low_complexity Low_complexity 1 25 0 1904 129 32 63 chr13 100712217 100712565 -1160604 - MER1B DNA MER1_type 0 337 1 218 350 72 0 chr13 100713136 100713233 -1159936 - L2 LINE L2 -1 3271 3168 21 0 0 0 chr13 100714340 100714361 -1158808 + AT_rich Low_complexity Low_complexity 1 21 0 1897 125 104 3 chr13 100714386 100714714 -1158455 + MER46B DNA MER2_type 1 236 0 198 319 129 32 chr13 100715764 100716137 -1157032 - L2 LINE L2 -529 2785 2377 800 202 54 0 chr13 100718572 100718740 -1154429 + AluJb SINE Alu 122 298 -14 1550 179 0 25 chr13 100725291 100725570 -1147599 + AluJo SINE Alu 1 272 -40 285 209 60 0 chr13 100727017 100727084 -1146085 - MIR SINE MIR -113 149 79 999 264 80 78 chr13 100727266 100727827 -1145342 + L1MA8 LINE L1 5509 6070 -221 610 243 103 9 chr13 100728074 100728288 -1144881 + L1MA9 LINE L1 6079 6312 0 276 360 81 12 chr13 100728617 100728789 -1144380 + MIR SINE MIR 10 193 -69 595 259 52 14 chr13 100729901 100730113 -1143056 - LTR54 LTR ERV1 0 510 291 2166 128 0 3 chr13 100730310 100730622 -1142547 - AluSx SINE Alu -1 311 1 499 197 128 43 chr13 100731063 100731251 -1141918 - LTR54 LTR ERV1 -280 230 27 207 170 0 0 chr13 100736566 100736613 -1136556 + CT-rich Low_complexity Low_complexity 2 48 0 910 277 134 2 chr13 100738184 100738588 -1134581 + MLT1E3 LTR MaLR 53 509 -115 289 251 102 43 chr13 100739475 100739662 -1133507 - MLT1D LTR MaLR -289 216 19 1335 217 82 24 chr13 100741732 100742073 -1131096 + MLT1A1 LTR MaLR 1 361 -4 1200 238 113 9 chr13 100742521 100742849 -1130320 - MLT1A1 LTR MaLR -3 362 1 532 227 4 25 chr13 100742866 100743149 -1130020 + (TG)n Simple_repeat Simple_repeat 1 277 0 311 341 23 0 chr13 100743149 100743237 -1129932 - L1MC4 LINE L1 -1339 6703 6614 441 322 0 0 chr13 100743241 100743387 -1129782 + (TG)n Simple_repeat Simple_repeat 2 147 0 403 225 68 68 chr13 100745688 100745879 -1127290 - MLT1H1 LTR MaLR -8 547 357 253 230 40 14 chr13 100746042 100746116 -1127053 - MLT1H1 LTR MaLR -376 173 98 254 290 68 6 chr13 100746293 100746455 -1126714 + L1ME4a LINE L1 5775 5946 -175 308 329 58 29 chr13 100746459 100746596 -1126573 + L1ME4a LINE L1 5975 6115 -6 185 307 68 23 chr13 100749768 100749856 -1123313 - MIR SINE MIR -44 218 127 285 155 69 16 chr13 100750860 100751107 -1122062 + (TG)n Simple_repeat Simple_repeat 1 260 0 218 182 0 0 chr13 100753179 100753223 -1119946 + GA-rich Low_complexity Low_complexity 1 44 0 257 142 8 60 chr13 100753224 100753441 -1119728 + HERV17 LTR ERV1 711 866 -7760 254 254 9 0 chr13 100753986 100754096 -1119073 + (CA)n Simple_repeat Simple_repeat 2 112 0 246 325 12 0 chr13 100754114 100754197 -1118972 + (CA)n Simple_repeat Simple_repeat 1 84 0 1932 154 3 3 chr13 100754724 100755029 -1118140 - AluJb SINE Alu -4 308 4 2200 106 3 0 chr13 100756171 100756474 -1116695 - AluJb SINE Alu -8 304 1 324 229 12 48 chr13 100756563 100756729 -1116440 + CT-rich Low_complexity Low_complexity 6 165 0 365 272 39 0 chr13 100757800 100757903 -1115266 + MIR SINE MIR 37 143 -119 185 298 124 16 chr13 100758735 100758856 -1114313 + L2 LINE L2 2004 2137 -1177 285 251 123 70 chr13 100859475 100859662 -1013507 - MIR SINE MIR -39 223 27 2281 137 8 32 chr13 100864373 100864746 -1008423 + THE1B LTR MaLR 1 364 0 311 189 0 0 chr13 100864788 100864841 -1008328 + L1M1 LINE L1 1248 1300 -6265 5397 221 47 16 chr13 100864854 100866423 -1006746 - L1MEc LINE L1 -1932 4283 1515 1480 267 68 21 chr13 100866428 100866605 -1006564 + L1MDa LINE L1 2448 2615 -3925 3049 113 4 38 chr13 100866605 100866692 -1006477 - L1PA13 LINE L1 0 6163 6075 6556 111 20 13 chr13 100866692 100867639 -1005530 - LTR13 LTR ERVK 0 954 1 3049 113 4 38 chr13 100867639 100868048 -1005121 - L1PA13 LINE L1 -88 6075 5684 1480 267 68 21 chr13 100868048 100868616 -1004553 + L1MDa LINE L1 2615 3227 -3313 1732 224 17 0 chr13 100868626 100868978 -1004191 + MLT1A1 LTR MaLR 7 364 -1 1773 268 76 13 chr13 100868988 100869136 -1004033 + L1MDa LINE L1 3234 3371 -3169 2960 144 28 18 chr13 100869136 100869636 -1003533 + LTR10B LTR ERV1 1 505 0 1773 268 76 13 chr13 100869636 100870247 -1002922 + L1MDa LINE L1 3371 4041 -2499 2143 145 17 8 chr13 100870248 100870600 -1002569 - THE1A LTR MaLR 0 355 1 9411 106 2 0 chr13 100870600 100871837 -1001332 - THE1A-int LTR MaLR 0 1580 342 1271 139 25 10 chr13 100871858 100872059 -1001110 - LTR3b LTR ERVK -139 361 158 398 60 0 0 chr13 100872084 100872134 -1001035 - HERVK14 LTR ERVK -61 5884 5835 354 186 0 18 chr13 100872134 100872209 -1000960 - MER41C LTR ERV1 -493 61 1 1492 70 0 5 chr13 100872209 100872395 -1000774 - HERVK14 LTR ERVK -186 5759 5575 1422 151 0 9 chr13 100872395 100872427 -1000742 - MER41C-int LTR ERV1 0 7756 7541 938 147 0 0 chr13 100872425 100872620 -1000549 - HERVK14 LTR ERVK -366 5579 5235 * 1509 181 47 72 chr13 100872625 100873137 -1000032 - MER4A LTR ERV1 -76 521 1 2078 130 0 60 chr13 100873192 100873545 -999624 - MER1B DNA MER1_type -7 332 1 761 215 109 73 chr13 100873556 100873894 -999275 - MSTD LTR MaLR -17 348 1 4804 214 56 35 chr13 100874005 100874903 -998266 - MER4A-int LTR ERV1 -219 3972 3041 4708 161 14 4 chr13 100874903 100875678 -997491 + LTR39 LTR ERV1 1 783 0 4804 214 56 35 chr13 100875678 100876000 -997169 - MER4A-int LTR ERV1 -1150 3041 2727 384 281 0 0 chr13 100876042 100876124 -997045 - FLAM_A SINE Alu -36 97 16 857 129 15 0 chr13 100876223 100876355 -996814 - MSTA LTR MaLR -294 134 1 1408 203 14 89 chr13 100876355 100876714 -996455 - MER4A-int LTR ERV1 -1519 2672 2341 1620 86 0 9 chr13 100876821 100877031 -996138 - AluSq SINE Alu -105 208 1 1565 185 14 76 chr13 100877056 100877423 -995746 - MER2 DNA MER2_type 0 345 2 384 316 48 4 chr13 100877438 100877688 -995481 - L1M4 LINE L1 -2576 3570 3310 294 275 55 28 chr13 100877771 100877925 -995244 - L1MCc LINE L1 -4942 1481 1371 6629 126 40 7 chr13 100878311 100879407 -993762 + Tigger3b DNA MER2_type 99 1230 -1 207 100 0 0 chr13 100879501 100879531 -993638 + (A)n Simple_repeat Simple_repeat 1 30 0 794 149 0 0 chr13 100879732 100879853 -993316 + FLAM_C SINE Alu 2 122 -21 3281 142 30 21 chr13 100879854 100880692 -992477 + L1M1 LINE L1 4791 5630 -673 209 195 0 0 chr13 100881277 100881318 -991851 + (CA)n Simple_repeat Simple_repeat 2 42 0 241 321 50 36 chr13 100982070 100982210 -890959 + L1ME LINE L1 4 145 -5925 1918 280 59 66 chr13 100982251 100982698 -890471 + L1M4 LINE L1 4035 4484 -1662 2434 75 0 0 chr13 100982698 100983004 -890165 + AluY SINE Alu 1 306 -5 1918 280 59 66 chr13 100983004 100983360 -889809 + L1M4 LINE L1 4484 4841 -1305 2152 70 0 7 chr13 100983360 100983673 -889496 - AluY SINE Alu 0 311 1 1918 280 59 66 chr13 100983673 100984120 -889049 + L1M4 LINE L1 4841 5278 -868 2288 161 44 5 chr13 100986704 100987114 -886055 - MSTB LTR MaLR 0 426 1 2432 56 0 7 chr13 100988296 100988602 -884567 - AluY SINE Alu -7 304 1 432 218 0 0 chr13 100990005 100990184 -882985 + (TG)n Simple_repeat Simple_repeat 2 180 0 567 0 0 0 chr13 100991010 100991073 -882096 + (TG)n Simple_repeat Simple_repeat 1 63 0 325 298 117 18 chr13 100992855 100993137 -880032 + L1MC4 LINE L1 7284 7593 -449 550 174 4 30 chr13 100993407 100993673 -879496 + (TG)n Simple_repeat Simple_repeat 1 258 0 950 198 5 5 chr13 100994244 100994432 -878737 - L1MA7 LINE L1 0 6291 6101 1193 202 175 24 chr13 100994432 100994804 -878365 + MSTC LTR MaLR 1 428 0 950 198 5 5 chr13 100994804 100994827 -878342 - L1MA7 LINE L1 -189 6102 6080 2185 264 62 33 chr13 100995018 100995863 -877306 - L1M4 LINE L1 -1276 4870 4002 2172 248 114 21 chr13 100995862 100996725 -876444 - L1M4 LINE L1 -2605 3541 2599 * 2419 99 0 6 chr13 100996998 100997312 -875857 + AluSq SINE Alu 1 312 -1 238 330 68 6 chr13 100997968 100998144 -875025 + L2 LINE L2 2255 2441 -873 2581 68 0 3 chr13 100998304 100998614 -874555 - AluSc SINE Alu 0 309 1 2567 56 7 0 chr13 100999863 101000166 -873003 - AluSx SINE Alu -7 305 1 1908 50 0 0 chr13 101000210 101000452 -872717 + L1PA4 LINE L1 5911 6152 -3 369 248 197 7 chr13 101001210 101001347 -871822 - MIR SINE MIR -27 235 73 225 0 0 0 chr13 101002836 101002861 -870308 + (CA)n Simple_repeat Simple_repeat 2 26 0 1387 242 149 8 chr13 101003066 101003562 -869607 - L1ME3A LINE L1 -194 5976 5411 312 337 8 33 chr13 101003883 101004123 -869046 + G-rich Low_complexity Low_complexity 1 234 0 197 194 0 0 chr13 101007783 101007819 -865350 + MIR SINE MIR 109 144 -64 229 118 0 0 chr13 101007895 101007929 -865240 + Alu SINE Alu 209 242 -61 229 118 0 0 chr13 101007961 101007995 -865174 + Alu SINE Alu 209 242 -61 229 118 0 0 chr13 101008027 101008061 -865108 + Alu SINE Alu 209 242 -61 229 118 0 0 chr13 101008093 101008127 -865042 + Alu SINE Alu 209 242 -61 229 118 0 0 chr13 101008159 101008193 -864976 + Alu SINE Alu 209 242 -61 229 118 0 0 chr13 101008225 101008259 -864910 + Alu SINE Alu 209 242 -61 229 118 0 0 chr13 101008291 101008325 -864844 + Alu SINE Alu 207 240 -59 229 118 0 0 chr13 101008357 101008391 -864778 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008423 101008457 -864712 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008489 101008523 -864646 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008555 101008589 -864580 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008621 101008655 -864514 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008687 101008721 -864448 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008753 101008787 -864382 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008819 101008853 -864316 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008885 101008919 -864250 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101008951 101008985 -864184 + Alu SINE Alu 207 240 -60 229 118 0 0 chr13 101009017 101009051 -864118 + Alu SINE Alu 207 240 -60 450 160 11 43 chr13 101009083 101009177 -863992 + AluSg/x SINE Alu 206 296 -13 187 217 43 0 chr13 101009914 101009960 -863209 - L2 LINE L2 -5 3267 3220 1578 225 92 12 chr13 101010022 101010702 -862467 - L1ME1 LINE L1 -141 6025 5271 816 159 0 0 chr13 101010866 101011042 -862127 + CT-rich Low_complexity Low_complexity 1 176 0 231 273 56 42 chr13 101013763 101013906 -859263 - MER5B DNA MER1_type -33 145 1 1099 241 62 40 chr13 101015925 101016080 -857089 + MLT1B LTR MaLR 7 157 -233 1830 170 0 3 chr13 101016080 101016369 -856800 + AluJo SINE Alu 1 288 -24 1099 241 62 40 chr13 101016369 101016586 -856583 + MLT1B LTR MaLR 157 387 -3 904 201 59 139 chr13 101016591 101016729 -856440 + MER47A DNA MER2_type 22 170 -2153 2506 81 3 0 chr13 101016729 101017036 -856133 - AluSp SINE Alu -4 309 2 904 201 59 139 chr13 101017036 101017270 -855899 + MER47A DNA MER2_type 170 364 -2 1430 175 98 19 chr13 101018037 101018352 -854817 - MER2 DNA MER2_type 0 344 5 291 229 0 0 chr13 101018933 101018994 -854175 + HsTC2 DNA Tc2 29 89 -1809 286 304 16 0 chr13 101020098 101020223 -852946 + HAL1 LINE L1 2297 2423 -84 2369 56 45 3 chr13 101022100 101022388 -850781 - AluY SINE Alu -11 300 1 399 303 185 5 chr13 101024761 101024956 -848213 + MIR SINE MIR 31 260 -2 23 0 0 0 chr13 101025195 101025218 -847951 + AT_rich Low_complexity Low_complexity 1 23 0 735 144 216 6 chr13 101025484 101025651 -847518 + AluSg/x SINE Alu 108 309 0 377 288 81 6 chr13 101025720 101025880 -847289 + L1ME2 LINE L1 5883 6054 -110 994 254 40 0 chr13 101026201 101026453 -846716 + MER7A DNA MER2_type 39 298 -48 234 310 81 11 chr13 101026649 101026736 -846433 + MIR SINE MIR 66 158 -104 1153 204 62 58 chr13 101026922 101027526 -845643 - L1M4 LINE L1 -521 5657 5060 420 307 12 6 chr13 101028120 101028283 -844886 + MER41B LTR ERV1 267 430 -205 1930 154 63 43 chr13 101028536 101028931 -844238 + MSTB1 LTR MaLR 1 403 -29 379 79 63 0 chr13 101028999 101029062 -844107 + MSTB1 LTR MaLR 366 432 0 959 279 110 69 chr13 101029155 101029341 -843828 + L1MEc LINE L1 975 1152 -5244 2397 99 0 3 chr13 101029341 101029654 -843515 + AluSx SINE Alu 1 312 0 959 279 110 69 chr13 101029654 101030413 -842756 + L1MEc LINE L1 1152 1959 -4437 1250 197 0 121 chr13 101030594 101030934 -842235 - AluJo SINE Alu -3 299 1 2390 239 71 53 chr13 101031301 101031575 -841594 + Charlie1a DNA MER1_type 15 283 -2478 1732 177 17 7 chr13 101031575 101031869 -841300 + AluJo SINE Alu 1 297 -15 2390 239 71 53 chr13 101031869 101032386 -840783 + Charlie1a DNA MER1_type 283 820 -635 1390 146 89 100 chr13 101032389 101032758 -840411 + MLT1A1 LTR MaLR 1 365 0 * 1565 199 84 55 chr13 101032758 101033324 -839845 + Charlie1a DNA MER1_type 831 1413 -42 1172 260 145 44 chr13 101033324 101034120 -839049 - L1MDa LINE L1 -5217 1323 46 231 209 15 45 chr13 101034137 101034204 -838965 + Charlie1a DNA MER1_type 1391 1455 0 619 115 0 0 chr13 101035191 101035287 -837882 + AluSg/x SINE Alu 205 300 -10 2000 128 0 11 chr13 101038024 101038327 -834842 + AluSx SINE Alu 5 304 0 914 202 77 0 chr13 101038677 101038885 -834284 + MLT2B2 LTR ERVL 2 225 -290 544 180 36 9 chr13 101038890 101039001 -834168 + MLT2B2 LTR ERVL 402 515 0 1480 143 4 38 chr13 101040003 101040240 -832929 - AluJo SINE Alu -83 229 1 2419 105 0 0 chr13 101040857 101041170 -831999 - AluSq SINE Alu 0 313 1 274 320 52 0 chr13 101041223 101041320 -831849 - L3 LINE CR1 -38 1539 1438 272 307 17 101 chr13 101041961 101042140 -831029 + MER58A DNA MER1_type 19 182 -42 185 228 177 13 chr13 101049926 101050005 -823164 - L2 LINE L2 -17 3296 3205 963 305 59 1 chr13 101051358 101051790 -821379 - L1MC2 LINE L1 0 6333 5862 25 0 0 0 chr13 101053773 101053798 -819371 + GC_rich Low_complexity Low_complexity 1 25 0 301 326 11 11 chr13 101060439 101060531 -812638 - L2 LINE L2 -17 3296 3205 1090 309 108 62 chr13 101064118 101064647 -808522 + L1M4 LINE L1 3252 3755 -2391 1688 151 22 47 chr13 101064647 101064966 -808203 + AluJo SINE Alu 1 311 -1 1090 309 108 62 chr13 101064966 101065273 -807896 + L1M4 LINE L1 3755 5371 -775 2385 49 0 0 chr13 101065273 101065588 -807581 - AluY SINE Alu 0 315 1 1608 155 61 68 chr13 101066085 101066479 -806690 + MSTD LTR MaLR 1 391 -5 387 388 49 9 chr13 101066548 101066772 -806397 + L1MEd LINE L1 417 649 -5470 1302 183 111 27 chr13 101067303 101067330 -805839 + MLT1A1 LTR MaLR 2 25 -340 1828 144 112 21 chr13 101067330 101067670 -805499 - THE1C LTR MaLR 0 375 5 1302 183 111 27 chr13 101067670 101067976 -805193 + MLT1A1 LTR MaLR 25 363 -2 592 319 191 15 chr13 101068418 101068963 -804206 + L2 LINE L2 2162 2802 -512 2289 111 58 14 chr13 101068965 101069324 -803845 + THE1C LTR MaLR 1 375 0 501 258 60 0 chr13 101069343 101069494 -803675 + MER58A DNA MER1_type 8 167 0 229 195 13 26 chr13 101069505 101069582 -803587 + CT-rich Low_complexity Low_complexity 2 77 0 230 211 0 67 chr13 101070272 101070362 -802807 + G-rich Low_complexity Low_complexity 4 87 0 274 192 39 55 chr13 101073140 101073322 -799847 + CT-rich Low_complexity Low_complexity 2 180 0 253 361 0 16 chr13 101073429 101073612 -799557 + C-rich Low_complexity Low_complexity 1 180 0 * 266 187 27 75 chr13 101073597 101073784 -799385 + CT-rich Low_complexity Low_complexity 2 179 0 254 193 27 75 chr13 101073807 101073994 -799175 + CT-rich Low_complexity Low_complexity 2 179 0 273 328 16 24 chr13 101074082 101074207 -798962 + C-rich Low_complexity Low_complexity 2 125 0 363 312 104 4 chr13 101074829 101075060 -798109 + L2 LINE L2 2248 2501 -813 2451 61 0 10 chr13 101075174 101075485 -797684 - AluSc SINE Alu -1 308 1 2081 134 0 0 chr13 101076733 101077038 -796131 - AluSx SINE Alu -7 305 1 602 195 166 0 chr13 101077348 101077553 -795616 - Charlie5 DNA MER1_type -27 2585 2347 193 321 282 0 chr13 101078409 101078540 -794629 + MIR SINE MIR 95 262 0 4518 274 81 41 chr13 101078726 101079941 -793228 - L1MEc LINE L1 -3893 2503 1338 1987 156 0 0 chr13 101079941 101080236 -792933 - AluJo SINE Alu -17 295 1 4518 274 81 41 chr13 101080236 101081392 -791777 - L1MEc LINE L1 -5058 1338 37 207 0 0 0 chr13 101081508 101081531 -791638 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 1926 156 3 3 chr13 101082128 101082430 -790739 - AluSx SINE Alu -10 302 1 703 233 87 8 chr13 101084120 101084418 -788751 + MLT1A2 LTR MaLR 1 374 0 2243 76 0 36 chr13 101085156 101085460 -787709 + AluSg SINE Alu 3 295 -15 1516 181 42 7 chr13 101085705 101085992 -787177 - AluJo SINE Alu -15 297 1 499 122 235 0 chr13 101086141 101086256 -786913 + THE1C LTR MaLR 15 156 -219 242 244 78 11 chr13 101086496 101086586 -786583 - L1MB4 LINE L1 0 6180 6085 316 371 55 39 chr13 101087377 101087741 -785428 - L1M4c LINE L1 -5078 1306 937 286 273 56 42 chr13 101090102 101090245 -782924 - MER5B DNA MER1_type -33 145 1 228 277 71 18 chr13 101091511 101091623 -781546 - L1ME4a LINE L1 -3 6118 6001 307 278 91 20 chr13 101091788 101091940 -781229 + Charlie5 DNA MER1_type 2335 2475 -110 411 73 0 0 chr13 101091940 101091995 -781174 + (TA)n Simple_repeat Simple_repeat 2 56 0 2306 94 0 3 chr13 101091995 101092293 -780876 - AluSx SINE Alu -15 297 1 307 278 91 20 chr13 101092293 101092337 -780832 + Charlie5 DNA MER1_type 2474 2546 -39 263 197 16 16 chr13 101092640 101092701 -780468 + CT-rich Low_complexity Low_complexity 2 62 0 230 264 0 0 chr13 101094670 101094723 -778446 + L2 LINE L2 3250 3302 -11 1905 129 36 34 chr13 101094943 101095300 -777869 + THE1B LTR MaLR 7 364 0 499 216 68 0 chr13 101095300 101095442 -777727 - MER53 DNA DNA -20 169 18 1795 140 0 49 chr13 101095544 101095690 -777479 + AluSx SINE Alu 1 126 -186 2388 60 0 7 chr13 101095690 101095988 -777181 + AluY SINE Alu 1 296 -15 1795 140 0 49 chr13 101095988 101096149 -777020 + AluSx SINE Alu 126 293 -19 202 267 0 17 chr13 101097664 101097724 -775445 + G-rich Low_complexity Low_complexity 1 59 0 2219 86 0 20 chr13 101097922 101098225 -774944 - AluSq SINE Alu -16 297 1 2222 89 0 49 chr13 101098284 101098609 -774560 - AluY SINE Alu -2 309 1 197 336 212 0 chr13 101099474 101099587 -773582 - MIR SINE MIR -8 254 118 2193 75 3 26 chr13 101100489 101100797 -772372 + AluY SINE Alu 1 301 -10 1284 234 70 27 chr13 101102722 101103163 -770006 + MLT1C LTR MaLR 8 467 0 2073 241 66 34 chr13 101103175 101103601 -769568 - L1ME1 LINE L1 -2 6164 5753 2120 104 6 52 chr13 101103601 101103736 -769433 + AluSx SINE Alu 1 141 -171 2829 3 0 0 chr13 101103736 101104047 -769122 + AluYa5 SINE Alu 1 311 0 2120 104 6 52 chr13 101104047 101104237 -768932 + AluSx SINE Alu 141 311 -1 2073 241 66 34 chr13 101104237 101105015 -768154 - L1ME1 LINE L1 -413 5753 4919 1626 208 24 43 chr13 101105015 101105386 -767783 + MLT1A1 LTR MaLR 1 364 -1 2073 241 66 34 chr13 101105386 101105412 -767757 - L1ME1 LINE L1 -1247 4919 4895 2477 73 0 6 chr13 101105412 101105727 -767442 - AluSq SINE Alu 0 313 1 4519 241 83 31 chr13 101105727 101106030 -767139 - L1ME1 LINE L1 -1583 4563 4277 2285 124 30 19 chr13 101106030 101106401 -766768 + THE1C LTR MaLR 1 375 0 4519 241 83 31 chr13 101106401 101107930 -765239 - L1ME1 LINE L1 -1869 4277 2636 390 369 183 11 chr13 101108116 101108487 -764682 + L1ME4a LINE L1 5566 6000 -121 5048 148 47 11 chr13 101111357 101111775 -761394 + MER4D LTR ERV1 1 403 -500 2089 111 3 63 chr13 101111775 101112107 -761062 - AluSx SINE Alu 0 312 1 5048 148 47 11 chr13 101112107 101112560 -760609 + MER4D LTR ERV1 403 903 0 655 304 146 21 chr13 101114479 101114936 -758233 + L2 LINE L2 2776 3312 -1 1383 269 67 2 chr13 101115527 101115959 -757210 + MLT1C LTR MaLR 7 466 -1 188 119 0 48 chr13 101117869 101117911 -755258 + (TCTCTG)n Simple_repeat Simple_repeat 2 41 0 240 235 0 29 chr13 101117926 101117994 -755175 + (TCTCTG)n Simple_repeat Simple_repeat 6 71 0 263 284 214 20 chr13 101118560 101118761 -754408 - MIR SINE MIR 0 262 23 203 156 0 0 chr13 101120207 101120239 -752930 - MIR SINE MIR -118 144 113 285 247 39 0 chr13 101120454 101120531 -752638 - MER58A DNA MER1_type -24 83 4 259 239 0 0 chr13 101121363 101121430 -751739 + (TG)n Simple_repeat Simple_repeat 1 67 0 198 278 0 0 chr13 101121570 101121667 -751502 + (TG)n Simple_repeat Simple_repeat 1 97 0 231 285 0 0 chr13 101121743 101121887 -751282 + (TG)n Simple_repeat Simple_repeat 1 144 0 269 48 48 0 chr13 101122169 101122211 -750958 + (TCTCTG)n Simple_repeat Simple_repeat 3 46 0 1899 215 102 8 chr13 101126474 101126972 -746197 + MER77 LTR ERV1 54 598 -7 205 200 60 0 chr13 101127203 101127253 -745916 - L3 LINE CR1 -7 1570 1518 204 327 50 10 chr13 101127813 101127914 -745255 + MIR SINE MIR 31 135 -127 1933 119 19 47 chr13 101135981 101136301 -736868 - AluSx SINE Alu -1 311 1 315 191 29 15 chr13 101136355 101136423 -736746 + MER81 DNA DNA 4 72 -42 206 284 267 0 chr13 101136984 101137100 -736069 - MER5B DNA MER1_type 0 178 32 1259 169 100 0 chr13 101137872 101138121 -735048 + AluJo SINE Alu 9 282 -30 313 229 61 0 chr13 101138166 101138297 -734872 + (CA)n Simple_repeat Simple_repeat 1 139 0 200 339 52 9 chr13 101138299 101138414 -734755 + MER5A DNA MER1_type 70 189 0 262 296 120 22 chr13 101139376 101139650 -733519 - L1M4 LINE L1 -1425 4721 4421 2108 97 13 0 chr13 101139796 101140094 -733075 - AluSq SINE Alu -5 308 7 316 244 41 57 chr13 101140525 101140648 -732521 - MER5B DNA MER1_type 0 178 58 673 25 0 0 chr13 101141499 101141580 -731589 - AluYb8 SINE Alu -5 313 233 751 128 40 0 chr13 101141619 101141744 -731425 + FLAM_C SINE Alu 13 142 -1 237 281 0 56 chr13 101141941 101142119 -731050 + L1ME4a LINE L1 5737 5904 -217 2264 86 0 16 chr13 101142337 101142652 -730517 + AluY SINE Alu 2 311 0 309 291 127 0 chr13 101142659 101142769 -730400 + L1ME4a LINE L1 5873 5996 -125 704 264 35 42 chr13 101142773 101143034 -730135 + L1ME LINE L1 5420 5678 -484 1029 237 88 59 chr13 101143161 101143616 -729553 + L1MC4a LINE L1 5594 6061 -1747 2724 177 125 15 chr13 101146117 101146772 -726397 + L1MB5 LINE L1 5432 6158 -16 236 299 122 9 chr13 101147032 101147139 -726030 - MIR SINE MIR -123 139 21 234 282 114 40 chr13 101147635 101147784 -725385 + L2 LINE L2 2117 2276 -1038 300 341 211 11 chr13 101148486 101148747 -724422 + L2 LINE L2 2274 2586 -728 23 0 0 0 chr13 101149529 101149552 -723617 + GC_rich Low_complexity Low_complexity 1 23 0 267 130 28 46 chr13 101150312 101150420 -722749 + (CGGGG)n Simple_repeat Simple_repeat 3 108 0 1652 89 203 0 chr13 101150973 101151219 -721950 + AluSc SINE Alu 1 296 -3 1704 173 18 3 chr13 101151448 101151732 -721437 + AluJb SINE Alu 3 290 -22 310 284 37 74 chr13 101152536 101152698 -720471 + L1MC5 LINE L1 7776 7931 -30 1813 52 5 0 chr13 101153581 101153793 -719376 + AluY SINE Alu 84 296 -15 1382 195 53 8 chr13 101154224 101154486 -718683 + AluJo SINE Alu 7 280 -32 281 150 30 70 chr13 101154487 101154587 -718582 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 218 307 40 40 chr13 101155506 101155607 -717562 - L2 LINE L2 -207 3065 2965 2761 176 22 20 chr13 101155617 101155838 -717331 - MER39 LTR ERV1 -3 704 485 2197 158 89 3 chr13 101155838 101156230 -716939 - MSTB LTR MaLR 0 426 1 2761 176 22 20 chr13 101156230 101156592 -716577 - MER39 LTR ERV1 -222 485 91 1287 256 138 29 chr13 101156886 101157471 -715698 - L1MC4 LINE L1 -535 7507 6859 242 192 123 14 chr13 101157468 101157541 -715628 - L1MB4 LINE L1 0 6180 6100 * 862 222 61 5 chr13 101157542 101157754 -715415 + MER2 DNA MER2_type 1 224 -121 225 94 0 0 chr13 101157753 101157785 -715384 - MER39 LTR ERV1 -277 430 399 * 634 169 39 15 chr13 101157783 101157913 -715256 + MER2 DNA MER2_type 208 340 -5 964 241 96 0 chr13 101157915 101158176 -714993 - L1MB5 LINE L1 -70 6104 5819 2579 208 35 10 chr13 101158343 101159116 -714053 - L1MB5 LINE L1 -319 5855 5056 1623 178 27 24 chr13 101159116 101159414 -713755 + AluJb SINE Alu 1 299 -13 2579 208 35 10 chr13 101159414 101159484 -713685 - L1MB5 LINE L1 -1118 5056 4989 360 210 70 83 chr13 101159668 101159825 -713344 + L1MC5 LINE L1 7650 7804 -157 252 364 26 13 chr13 101159842 101159996 -713173 - L2 LINE L2 -227 3045 2890 217 293 190 39 chr13 101159996 101160201 -712968 - L2 LINE L2 -18 3254 3019 2008 139 126 16 chr13 101160414 101160795 -712374 + MSTA LTR MaLR 6 428 0 1273 194 37 22 chr13 101161217 101161485 -711684 + AluJo SINE Alu 26 297 -15 32 43 0 0 chr13 101162150 101162196 -710973 + AT_rich Low_complexity Low_complexity 1 46 0 532 362 99 22 chr13 101162293 101162655 -710514 + L1ME LINE L1 5265 5654 -467 2131 90 11 0 chr13 101163277 101163545 -709624 + AluY SINE Alu 23 293 -18 2505 167 21 2 chr13 101164375 101164847 -708322 - L1MC1 LINE L1 -204 6129 5649 576 205 111 8 chr13 101164992 101165109 -708060 + FLAM_A SINE Alu 1 129 -4 237 309 21 0 chr13 101165291 101165388 -707781 - L1MB5 LINE L1 -406 5715 5617 346 224 224 6 chr13 101165558 101165714 -707455 + MIR SINE MIR 66 255 -7 532 290 165 41 chr13 101165719 101165854 -707315 - L1MB5 LINE L1 -755 5391 5274 2255 113 16 7 chr13 101165854 101166163 -707006 - AluSx SINE Alu 0 312 1 532 290 165 41 chr13 101166163 101166285 -706884 - L1MB5 LINE L1 -872 5274 5169 2249 147 121 3 chr13 101166285 101166666 -706503 - MSTB LTR MaLR 0 426 1 532 290 165 41 chr13 101166666 101166944 -706225 - L1MB5 LINE L1 -977 5169 4927 1735 117 109 4 chr13 101166944 101167228 -705941 - AluJo SINE Alu 0 312 2 532 290 165 41 chr13 101167228 101167485 -705684 - L1MB5 LINE L1 -1219 4927 4427 441 304 155 26 chr13 101167495 101167941 -705228 - L2 LINE L2 -1 3312 2696 546 253 118 62 chr13 101167948 101168237 -704932 - L1MB5 LINE L1 -1780 4366 4062 232 277 85 51 chr13 101168503 101168680 -704489 - L1MB5 LINE L1 -2213 3933 3751 2394 64 7 3 chr13 101168862 101169158 -704011 + AluY SINE Alu 1 297 -14 2152 131 3 0 chr13 101169207 101169505 -703664 + AluSx SINE Alu 1 299 -13 2325 86 10 0 chr13 101170725 101171016 -702153 - AluSg SINE Alu -16 294 1 1956 139 13 3 chr13 101171308 101171609 -701560 + AluJo SINE Alu 1 304 -8 212 256 0 13 chr13 101172265 101172343 -700826 + (TA)n Simple_repeat Simple_repeat 1 77 0 628 173 36 0 chr13 101174211 101174321 -698848 + AluJo/FLAM SINE Alu 5 118 -184 2260 118 3 0 chr13 101174321 101174625 -698544 - AluSx SINE Alu -7 305 1 499 280 155 27 chr13 101174782 101174956 -698213 + L1 LINE L1 4175 4325 -1821 1730 183 3 10 chr13 101174956 101175257 -697912 - AluJo SINE Alu -13 299 1 499 280 155 27 chr13 101175257 101175378 -697791 + L1 LINE L1 4325 4508 -1638 896 184 71 30 chr13 101175799 101176065 -697104 - L1MA7 LINE L1 0 6291 6015 2233 101 0 3 chr13 101176194 101176490 -696679 + AluY SINE Alu 2 296 -15 181 242 65 16 chr13 101176603 101176665 -696504 - L2 LINE L2 -1473 1841 1777 220 245 64 0 chr13 101177112 101177206 -695963 - L2 LINE L2 -2784 530 431 2255 80 21 0 chr13 101178208 101178497 -694672 + AluY SINE Alu 1 295 -16 2184 100 14 0 chr13 101178777 101179067 -694102 + AluSg SINE Alu 1 294 -16 2495 71 0 0 chr13 101179072 101179367 -693802 + AluSg SINE Alu 1 295 -15 654 220 244 18 chr13 101179909 101180241 -692928 + L1MA8 LINE L1 5869 6275 -16 416 280 156 38 chr13 101180470 101180681 -692488 + MIR SINE MIR 27 262 0 1144 243 50 13 chr13 101181000 101181317 -691852 + MER58B DNA MER1_type 5 333 -8 2084 93 76 3 chr13 101184204 101184493 -688676 - AluSg SINE Alu 0 310 1 433 201 134 0 chr13 101185320 101185454 -687715 - L1ME4a LINE L1 -1 6120 5969 2194 221 63 77 chr13 101185508 101185901 -687268 - L1ME1 LINE L1 -46 6189 5792 2331 102 0 0 chr13 101185901 101186205 -686964 - AluSq SINE Alu -9 304 1 2194 221 63 77 chr13 101186205 101187021 -686148 - L1ME1 LINE L1 -443 5792 5010 2322 99 0 7 chr13 101187021 101187323 -685846 + AluSx SINE Alu 1 300 -12 2194 221 63 77 chr13 101187323 101187408 -685761 - L1ME1 LINE L1 -1225 5010 4925 609 261 50 5 chr13 101187426 101187625 -685544 - L1ME1 LINE L1 -1402 4813 4606 1261 136 0 0 chr13 101187628 101187804 -685365 + AluJb SINE Alu 3 178 -134 473 295 63 11 chr13 101187819 101188009 -685160 - L1ME1 LINE L1 -6154 242 43 678 188 0 0 chr13 101189056 101189173 -683996 - FLAM_C SINE Alu -26 117 1 2224 102 0 3 chr13 101192475 101192768 -680401 + AluSx SINE Alu 1 292 -20 722 284 129 29 chr13 101193853 101194265 -678904 - MLT1E LTR MaLR 0 593 141 254 281 0 12 chr13 101194537 101194619 -678550 + MIR3 SINE MIR 104 184 -24 304 376 53 0 chr13 101195903 101196036 -677133 - L2 LINE L2 -1 3312 3173 2192 100 3 0 chr13 101196087 101196396 -676773 - AluSg SINE Alu 0 310 1 1201 170 128 23 chr13 101197167 101197432 -675737 + AluJb SINE Alu 1 293 -19 1945 108 7 14 chr13 101197910 101198217 -674952 - AluSp SINE Alu 0 305 1 2373 51 0 7 chr13 101198592 101198887 -674282 + AluY SINE Alu 2 294 -17 322 293 89 8 chr13 101199202 101199325 -673844 - MIR SINE MIR -20 242 110 570 216 45 0 chr13 101201265 101201376 -671793 + FLAM_C SINE Alu 2 117 -26 1799 191 37 11 chr13 101201707 101202058 -671111 - MLT1A1 LTR MaLR 0 365 6 2252 77 0 13 chr13 101202145 101202444 -670725 + AluSg SINE Alu 1 295 -15 2197 50 30 27 chr13 101203360 101203659 -669510 + AluY SINE Alu 1 300 -11 263 325 119 20 chr13 101204803 101204954 -668215 + L2 LINE L2 1837 2002 -1312 384 265 174 0 chr13 101205109 101205241 -667928 - MIR SINE MIR -15 247 93 1830 139 0 7 chr13 101205282 101205590 -667579 - AluJo SINE Alu 0 310 5 599 177 21 43 chr13 101206132 101206273 -666896 - MIR SINE MIR -97 165 28 222 309 24 0 chr13 101206448 101206532 -666637 + (CTA)n Simple_repeat Simple_repeat 2 87 0 352 261 5 33 chr13 101206533 101206964 -666205 + (CCA)n Simple_repeat Simple_repeat 1 419 0 2371 66 0 3 chr13 101210210 101210513 -662656 + AluY SINE Alu 1 302 -9 266 364 85 23 chr13 101212427 101212556 -660613 - MIR SINE MIR -78 184 48 1086 197 70 63 chr13 101212675 101212974 -660195 + AluJo SINE Alu 1 301 -1 27 29 0 0 chr13 101213079 101213113 -660056 + AT_rich Low_complexity Low_complexity 1 34 0 433 241 118 15 chr13 101214683 101214878 -658291 + MER20 DNA MER1_type 2 216 -3 526 188 149 39 chr13 101215098 101215279 -657890 + L1MD1 LINE L1 5854 6054 -188 450 242 71 43 chr13 101215316 101215527 -657642 + L1MD2 LINE L1 6142 6358 -1 2178 106 0 3 chr13 101216033 101216334 -656835 - AluSg1 SINE Alu -9 300 1 1617 89 203 0 chr13 101216556 101216802 -656367 + AluSc SINE Alu 1 296 -3 1557 173 18 3 chr13 101217031 101217315 -655854 + AluJb SINE Alu 3 290 -22 302 284 37 74 chr13 101218119 101218281 -654888 + L1MC5 LINE L1 7776 7931 -30 1709 52 5 0 chr13 101219164 101219376 -653793 + AluY SINE Alu 84 296 -15 1254 195 53 8 chr13 101219807 101220069 -653100 + AluJo SINE Alu 7 280 -32 281 150 30 70 chr13 101220070 101220170 -652999 + (TAGA)n Simple_repeat Simple_repeat 1 96 0 217 307 40 40 chr13 101221089 101221190 -651979 - L2 LINE L2 -207 3065 2965 2928 176 22 20 chr13 101221200 101221421 -651748 - MER39 LTR ERV1 -3 704 485 2156 158 89 3 chr13 101221421 101221813 -651356 - MSTB LTR MaLR 0 426 1 2928 176 22 20 chr13 101221813 101222175 -650994 - MER39 LTR ERV1 -222 485 91 1390 256 138 29 chr13 101222469 101223054 -650115 - L1MC4 LINE L1 -535 7507 6859 253 192 123 14 chr13 101223051 101223124 -650045 - L1MB4 LINE L1 0 6180 6100 * 915 222 61 5 chr13 101223125 101223337 -649832 + MER2 DNA MER2_type 1 224 -121 236 94 0 0 chr13 101223336 101223368 -649801 - MER39 LTR ERV1 -277 430 399 * 676 169 39 15 chr13 101223366 101223496 -649673 + MER2 DNA MER2_type 208 340 -5 1016 241 96 0 chr13 101223498 101223759 -649410 - L1MB5 LINE L1 -70 6104 5819 2687 207 35 10 chr13 101223926 101224699 -648470 - L1MB5 LINE L1 -319 5855 5056 1481 178 27 24 chr13 101224699 101224997 -648172 + AluJb SINE Alu 1 299 -13 2687 207 35 10 chr13 101224997 101225067 -648102 - L1MB5 LINE L1 -1118 5056 4989 377 210 70 83 chr13 101225251 101225408 -647761 + L1MC5 LINE L1 7650 7804 -157 243 364 26 13 chr13 101225425 101225579 -647590 - L2 LINE L2 -227 3045 2890 200 293 190 39 chr13 101225579 101225784 -647385 - L2 LINE L2 -18 3254 3019 2141 139 126 16 chr13 101225997 101226378 -646791 + MSTA LTR MaLR 6 428 0 1145 194 37 22 chr13 101226800 101227068 -646101 + AluJo SINE Alu 26 297 -15 32 43 0 0 chr13 101227733 101227779 -645390 + AT_rich Low_complexity Low_complexity 1 46 0 520 361 101 22 chr13 101227881 101228238 -644931 + L1ME LINE L1 5270 5654 -467 1999 90 11 0 chr13 101228860 101229128 -644041 + AluY SINE Alu 23 293 -18 2633 173 23 3 chr13 101229958 101230450 -642719 - L1MC1 LINE L1 -204 6129 5631 555 205 111 8 chr13 101230575 101230692 -642477 + FLAM_A SINE Alu 1 129 -4 251 309 21 0 chr13 101230874 101230971 -642198 - L1MB5 LINE L1 -406 5715 5617 358 224 224 6 chr13 101231141 101231297 -641872 + MIR SINE MIR 66 255 -7 545 280 170 48 chr13 101231302 101231439 -641730 - L1MB5 LINE L1 -755 5391 5272 2096 111 23 7 chr13 101231439 101231746 -641423 - AluSx SINE Alu 0 312 1 545 280 170 48 chr13 101231746 101231868 -641301 - L1MB5 LINE L1 -874 5272 5166 2209 147 121 3 chr13 101231868 101232249 -640920 - MSTB LTR MaLR 0 426 1 545 280 170 48 chr13 101232249 101232527 -640642 - L1MB5 LINE L1 -980 5166 4923 1612 117 109 4 chr13 101232527 101232811 -640358 - AluJo SINE Alu 0 312 2 545 280 170 48 chr13 101232811 101233068 -640101 - L1MB5 LINE L1 -1223 4923 4427 436 319 140 29 chr13 101233078 101233357 -639812 - L2 LINE L2 -1 3312 3003 258 245 137 62 chr13 101233514 101233820 -639349 - L1MB5 LINE L1 -1756 4390 4062 256 271 85 51 chr13 101234086 101234263 -638906 - L1MB5 LINE L1 -2213 3933 3751 2254 64 7 3 chr13 101234445 101234741 -638428 + AluY SINE Alu 1 297 -14 2004 131 3 0 chr13 101234790 101235088 -638081 + AluSx SINE Alu 1 299 -13 2184 86 10 0 chr13 101236308 101236599 -636570 - AluSg SINE Alu -16 294 1 1809 139 13 3 chr13 101236891 101237192 -635977 + AluJo SINE Alu 1 304 -8 212 256 0 13 chr13 101237848 101237926 -635243 + (TA)n Simple_repeat Simple_repeat 1 77 0 609 173 36 0 chr13 101239794 101239904 -633265 + FLAM_C SINE Alu 5 118 -15 2106 114 3 0 chr13 101239910 101240208 -632961 - AluSx SINE Alu -13 299 1 234 264 121 35 chr13 101240365 101240539 -632630 + L1 LINE L1 4175 4375 -1771 1584 183 3 10 chr13 101240539 101240840 -632329 - AluJo SINE Alu -13 299 1 234 264 121 35 chr13 101240840 101240896 -632273 + L1 LINE L1 4375 4425 -1721 948 181 71 30 chr13 101241382 101241648 -631521 - L1MA7 LINE L1 0 6291 6015 2090 101 0 3 chr13 101241777 101242073 -631096 + AluY SINE Alu 2 296 -15 205 245 64 0 chr13 101242695 101242789 -630380 - L2 LINE L2 -2784 530 431 2271 80 21 0 chr13 101243791 101244080 -629089 + AluY SINE Alu 1 295 -16 2244 102 7 0 chr13 101244360 101244654 -628515 + AluSg SINE Alu 1 296 -14 1991 145 6 28 chr13 101244681 101244999 -628170 - AluSx SINE Alu -1 311 1 2038 93 0 12 chr13 101245028 101245286 -627883 - AluSg SINE Alu -55 255 1 1924 158 20 3 chr13 101245311 101245615 -627554 + AluJo SINE Alu 1 309 -3 1129 75 0 0 chr13 101245635 101245768 -627401 + AluY SINE Alu 1 133 -178 373 177 0 63 chr13 101245794 101245873 -627296 - 7SLRNA srpRNA srpRNA -9 311 238 1847 136 59 7 chr13 101246022 101246309 -626860 - AluSg SINE Alu -8 302 1 827 101 134 0 chr13 101246309 101246428 -626741 - AluSq/x SINE Alu -178 135 1 747 270 118 24 chr13 101246439 101246861 -626308 - HAL1 LINE L1 -802 1705 1244 37 76 0 0 chr13 101247017 101247096 -626073 + AT_rich Low_complexity Low_complexity 1 79 0 2228 197 25 48 chr13 101247118 101247640 -625529 + LTR26B LTR ERV1 3 512 -19 1866 160 7 3 chr13 101247671 101247958 -625211 + AluJb SINE Alu 5 292 -20 395 269 149 8 chr13 101248783 101248917 -624252 + MIR SINE MIR 66 218 -44 383 306 150 19 chr13 101249022 101249381 -623788 + L1ME1 LINE L1 1558 1963 -4433 284 252 24 63 chr13 101249505 101249632 -623537 + L1ME1 LINE L1 2025 2146 -4250 2368 142 93 51 chr13 101249665 101250216 -622953 - MER4B LTR ERV1 -36 574 1 2143 121 3 0 chr13 101250232 101250530 -622639 - AluSc SINE Alu -10 299 1 469 217 58 96 chr13 101250545 101250734 -622435 + L1ME1 LINE L1 2172 2352 -4044 1541 180 40 4 chr13 101250734 101251006 -622163 - AluJb SINE Alu -30 282 1 469 217 58 96 chr13 101251006 101251056 -622113 + L1ME1 LINE L1 2352 2402 -3994 2198 90 0 11 chr13 101251393 101251672 -621497 + AluSg SINE Alu 14 289 -21 1699 139 7 25 chr13 101252479 101252753 -620416 + AluJo SINE Alu 1 269 -43 2093 114 31 14 chr13 101252754 101253044 -620125 - AluSx SINE Alu -17 295 1 567 307 53 25 chr13 101253060 101253454 -619715 + L1ME1 LINE L1 2342 2746 -3469 501 196 23 161 chr13 101253942 101254071 -619098 + L1ME1 LINE L1 2801 2946 -3269 2482 88 0 3 chr13 101254071 101254377 -618792 + AluSg SINE Alu 1 305 -5 501 196 23 161 chr13 101254377 101254589 -618580 + L1ME1 LINE L1 2946 3095 -3120 1697 209 25 3 chr13 101254591 101254945 -618224 + MLT1A1 LTR MaLR 1 365 0 1216 200 107 16 chr13 101254946 101255331 -617838 + L1ME1 LINE L1 4523 4942 -1273 2019 157 3 3 chr13 101255331 101255643 -617526 + AluJb SINE Alu 1 312 0 242 48 48 0 chr13 101255662 101255704 -617465 - MER4D LTR ERV1 -2 901 858 577 83 12 12 chr13 101255706 101255790 -617379 + FRAM SINE Alu 63 146 -30 1011 58 41 12 chr13 101255790 101255962 -617207 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 1527 156 49 40 chr13 101255962 101256279 -616890 - MER4D LTR ERV1 -40 863 541 1990 142 6 13 chr13 101256279 101256590 -616579 + AluJb SINE Alu 1 309 -3 2508 253 46 41 chr13 101256599 101256636 -616533 + L1ME1 LINE L1 5236 5271 -964 2335 90 13 26 chr13 101256636 101256947 -616222 + AluY SINE Alu 1 307 -4 2508 253 46 41 chr13 101256947 101257230 -615939 + L1ME1 LINE L1 5271 5551 -684 687 186 8 0 chr13 101257230 101257359 -615810 + FLAM_A SINE Alu 4 133 0 2508 253 46 41 chr13 101257359 101258028 -615141 + L1ME1 LINE L1 5551 6230 -5 2095 140 10 0 chr13 101258050 101258357 -614812 + AluSx SINE Alu 1 310 -2 2303 104 7 0 chr13 101258724 101259031 -614138 - AluSc SINE Alu 0 309 1 376 241 120 79 chr13 101259500 101259636 -613533 + L1ME LINE L1 5563 5692 -429 2186 131 0 16 chr13 101259636 101259950 -613219 - AluSg SINE Alu -1 309 1 1967 173 0 0 chr13 101259952 101260247 -612922 - AluJo SINE Alu -17 295 1 376 241 120 79 chr13 101260247 101260323 -612846 + L1ME LINE L1 5692 5787 -334 1228 181 74 11 chr13 101261060 101261330 -611839 + L1MA5A LINE L1 6011 6297 0 1393 120 167 50 chr13 101261340 101261395 -611774 + AluSx SINE Alu 15 62 -250 2364 100 0 3 chr13 101261395 101261706 -611463 + AluSg SINE Alu 1 310 0 1393 120 167 50 chr13 101261706 101261908 -611261 + AluSx SINE Alu 62 302 -10 1112 253 42 0 chr13 101262062 101262374 -610795 - L1MD3 LINE L1 -81 7914 7590 1870 284 71 38 chr13 101262498 101262707 -610462 - L1MD3 LINE L1 -745 7250 7049 3609 105 0 4 chr13 101262707 101263220 -609949 - MER9 LTR ERVK 0 511 1 1870 284 71 38 chr13 101263220 101263886 -609283 - L1MD3 LINE L1 -946 7049 6346 932 278 59 43 chr13 101263886 101264254 -608915 + MER34B LTR ERV1 22 428 -137 1824 167 100 8 chr13 101264254 101264643 -608526 + MSTB LTR MaLR 1 425 -1 932 278 59 43 chr13 101264643 101264780 -608389 + MER34B LTR ERV1 428 561 -4 359 289 88 69 chr13 101264802 101265062 -608107 - L1MC3 LINE L1 -1501 6284 6020 225 229 49 0 chr13 101265226 101265287 -607882 - L1MC3 LINE L1 -2038 5957 5894 248 28 56 0 chr13 101265296 101265332 -607837 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 585 139 0 0 chr13 101265355 101265441 -607728 + AluJ/FLAM SINE Alu 2 87 -225 2051 128 0 17 chr13 101265441 101265738 -607431 + AluJo SINE Alu 21 312 0 317 354 110 47 chr13 101265761 101266079 -607090 + L1MC4a LINE L1 6195 6550 -1258 2397 91 0 7 chr13 101266079 101266377 -606792 + AluSp SINE Alu 1 296 -17 317 354 110 47 chr13 101266377 101266505 -606664 + L1MC4a LINE L1 6550 6669 -1139 1551 209 87 32 chr13 101266526 101266886 -606283 + MER65C LTR ERV1 3 393 -68 2250 197 29 4 chr13 101266886 101267342 -605827 + LTR24 LTR ERV1 1 467 0 1551 209 87 32 chr13 101267342 101267416 -605753 + MER65C LTR ERV1 393 461 0 262 226 19 123 chr13 101267416 101267453 -605716 + L1MC5 LINE L1 6705 6744 -1217 2154 126 0 3 chr13 101267453 101267754 -605415 - AluSx SINE Alu -12 300 1 262 226 19 123 chr13 101267754 101267822 -605347 + L1MC5 LINE L1 6744 6799 -1162 1254 216 54 14 chr13 101267840 101268118 -605051 + AluJb SINE Alu 1 289 -23 2730 170 39 34 chr13 101268323 101268887 -604282 + LTR24B LTR ERV1 9 575 -1 293 139 12 47 chr13 101268949 101268967 -604202 + A-rich Low_complexity Low_complexity 1 18 -65 1299 149 15 116 chr13 101268967 101269303 -603866 + AluJb SINE Alu 1 302 0 293 139 12 47 chr13 101269303 101269370 -603799 + A-rich Low_complexity Low_complexity 18 83 0 343 231 56 9 chr13 101269819 101269927 -603242 - MER34C LTR ERV1 0 585 473 3343 188 43 4 chr13 101269984 101270674 -602495 - LTR62 LTR ERVK -2 717 1 2431 61 7 0 chr13 101270782 101271077 -602092 + AluSx SINE Alu 1 297 -15 23 92 0 0 chr13 101271861 101271926 -601243 + GC_rich Low_complexity Low_complexity 1 65 0 219 69 0 0 chr13 101271986 101272015 -601154 + (CTG)n Simple_repeat Simple_repeat 2 30 0 2252 102 3 0 chr13 101273382 101273676 -599493 + AluSg SINE Alu 1 295 -15 1937 146 10 0 chr13 101273796 101274084 -599085 - AluSg SINE Alu -19 291 1 2275 102 10 0 chr13 101274090 101274385 -598784 - AluSg SINE Alu -12 298 1 2356 107 0 16 chr13 101274720 101275038 -598131 + AluSq SINE Alu 1 313 0 2129 101 10 42 chr13 101275046 101275354 -597815 + AluSc SINE Alu 1 298 -11 566 161 136 8 chr13 101275737 101275855 -597314 + FLAM_C SINE Alu 6 138 -5 2059 118 10 26 chr13 101275860 101276166 -597003 + AluSx SINE Alu 1 301 -11 234 0 0 0 chr13 101276166 101276192 -596977 + (TA)n Simple_repeat Simple_repeat 2 27 0 2388 84 3 3 chr13 101276354 101276662 -596507 - AluSx SINE Alu -4 308 1 2150 95 7 18 chr13 101276684 101276969 -596200 - AluSx SINE Alu -10 302 21 28 29 0 0 chr13 101277064 101277099 -596070 + AT_rich Low_complexity Low_complexity 1 35 0 752 161 0 15 chr13 101277099 101277229 -595940 - FLAM_C SINE Alu -5 128 1 460 233 261 30 chr13 101277278 101277481 -595688 + MIR3 SINE MIR 3 257 -5 1759 132 76 31 chr13 101278293 101278582 -594587 + AluSx SINE Alu 1 302 -10 2320 98 7 10 chr13 101279149 101279456 -593713 - AluSq SINE Alu -6 307 2 2160 118 17 0 chr13 101280576 101280873 -592296 + AluSx SINE Alu 1 302 -10 2561 71 0 0 chr13 101281329 101281639 -591530 - AluY SINE Alu -1 310 1 2215 133 0 0 chr13 101281650 101281958 -591211 - AluSx SINE Alu -4 308 1 326 318 36 18 chr13 101281964 101282074 -591095 - L1ME LINE L1 -286 5835 5724 1303 142 19 19 chr13 101282271 101282482 -590687 + AluJo SINE Alu 97 307 -5 1862 166 0 13 chr13 101282515 101282816 -590353 - AluSx SINE Alu -15 297 1 2204 117 27 0 chr13 101282825 101283125 -590044 - AluSp SINE Alu -5 308 1 21 36 0 0 chr13 101283185 101283213 -589956 + AT_rich Low_complexity Low_complexity 1 28 0 2014 155 7 0 chr13 101283604 101283901 -589268 - AluJo SINE Alu -13 299 1 2272 105 7 0 chr13 101284447 101284741 -588428 + AluSx SINE Alu 1 296 -16 2510 71 0 0 chr13 101284746 101285041 -588128 + AluSg SINE Alu 1 295 -15 673 223 244 18 chr13 101285583 101285915 -587254 + L1MA8 LINE L1 5869 6275 -16 371 288 98 43 chr13 101286171 101286355 -586814 + MIR SINE MIR 69 262 0 1182 243 50 13 chr13 101286674 101286991 -586178 + MER58B DNA MER1_type 5 333 -8 2093 93 76 3 chr13 101289782 101290071 -583098 - AluSg SINE Alu 0 310 1 2215 127 0 0 chr13 101290225 101290524 -582645 + AluSx SINE Alu 1 299 -13 2513 57 3 3 chr13 101290826 101291125 -582044 - AluY SINE Alu -12 299 1 605 94 0 42 chr13 101291200 101291296 -581873 + AluSg/x SINE Alu 207 298 -12 576 159 225 0 chr13 101291296 101291447 -581722 - MER21A LTR ERV1 -726 205 21 1698 161 38 14 chr13 101292101 101292393 -580776 - AluJb SINE Alu -12 300 2 278 188 47 0 chr13 101293698 101293762 -579407 + MER105 DNA DNA 80 146 -58 1197 164 5 5 chr13 101295384 101295579 -577590 + AluJo SINE Alu 83 277 -35 23 0 0 0 chr13 101295898 101295921 -577248 + GC_rich Low_complexity Low_complexity 1 23 0 2395 141 43 5 chr13 101298053 101298444 -574725 + L1PA11 LINE L1 5768 6173 -1 2353 67 0 10 chr13 101299234 101299534 -573635 - AluSx SINE Alu -15 297 1 2249 92 3 3 chr13 101300793 101301096 -572073 + AluSx SINE Alu 1 303 -9 766 239 6 0 chr13 101301106 101301282 -571887 + L1MB3 LINE L1 5661 5837 -334 585 233 13 19 chr13 101301307 101301466 -571703 + L1MB3 LINE L1 6026 6183 0 2113 106 0 10 chr13 101301590 101301882 -571287 - AluSg SINE Alu -21 289 1 1619 108 0 9 chr13 101302936 101303158 -570011 - AluJb SINE Alu -24 288 69 2159 95 9 25 chr13 101303700 101304017 -569152 + AluSq SINE Alu 1 312 -1 2342 96 0 3 chr13 101306029 101306342 -566827 - AluSx SINE Alu 0 312 1 739 187 0 0 chr13 101306372 101306495 -566674 + FLAM_C SINE Alu 1 123 -20 242 276 41 41 chr13 101306518 101306616 -566553 - L1MC4 LINE L1 -40 8002 7905 495 210 32 0 chr13 101306617 101306839 -566330 + (CA)n Simple_repeat Simple_repeat 1 229 0 374 325 49 64 chr13 101307102 101307447 -565722 + L1MC5 LINE L1 6735 7074 -887 1918 134 41 0 chr13 101307880 101308172 -564997 - AluSg SINE Alu -2 308 5 324 0 0 0 chr13 101308188 101308224 -564945 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 324 0 0 0 chr13 101308224 101308260 -564909 + (TG)n Simple_repeat Simple_repeat 2 37 0 1923 119 0 0 chr13 101308260 101308520 -564649 - AluSx SINE Alu -52 260 1 2296 61 3 14 chr13 101309210 101309506 -563663 - AluY SINE Alu -18 293 1 547 191 0 0 chr13 101309557 101309662 -563507 - L1MA3 LINE L1 0 6305 6201 1247 102 0 0 chr13 101309662 101309829 -563340 + AluSg/x SINE Alu 137 303 -9 2148 205 79 13 chr13 101309849 101310177 -562992 - L1MA4 LINE L1 -119 6181 5799 2115 123 3 0 chr13 101310177 101310477 -562692 - AluSq SINE Alu -12 301 1 2148 205 79 13 chr13 101310477 101310704 -562465 - L1MA4 LINE L1 -501 5799 5589 1772 162 10 3 chr13 101311396 101311698 -561471 + AluJo SINE Alu 1 304 -8 2326 100 0 0 chr13 101313293 101313594 -559575 - AluSq SINE Alu -8 305 5 450 314 96 30 chr13 101313594 101314123 -559046 - L1M4 LINE L1 -842 5304 4741 306 338 191 31 chr13 101314169 101314394 -558775 - L1M4 LINE L1 -2299 3847 3587 912 155 0 0 chr13 101314406 101314548 -558621 - AluJb SINE Alu -25 287 146 1647 163 0 11 chr13 101314603 101314880 -558289 + AluJo SINE Alu 26 299 -13 2329 87 0 3 chr13 101314881 101315193 -557976 + AluSx SINE Alu 1 311 -1 577 151 0 11 chr13 101315422 101315515 -557654 - AluSg/x SINE Alu -4 306 215 243 103 0 0 chr13 101315628 101315667 -557502 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2101 106 3 0 chr13 101315667 101315951 -557218 - AluSq SINE Alu -28 285 1 258 228 20 10 chr13 101315953 101316054 -557115 - L1M4 LINE L1 -2883 3263 3162 734 130 23 46 chr13 101316205 101316336 -556833 - FLAM_C SINE Alu -5 128 1 1624 129 50 7 chr13 101316339 101316618 -556551 - AluSx SINE Alu -21 291 1 2097 38 11 15 chr13 101316639 101316901 -556268 + AluY SINE Alu 33 293 -18 279 335 48 13 chr13 101317910 101318075 -555094 + MIR SINE MIR 14 183 -56 26 30 0 0 chr13 101318391 101318424 -554745 + AT_rich Low_complexity Low_complexity 1 33 0 2349 89 3 0 chr13 101318816 101319120 -554049 + AluSx SINE Alu 1 305 -7 1635 136 8 4 chr13 101322581 101322832 -550337 + AluJb SINE Alu 28 279 -33 1332 208 49 63 chr13 101322854 101323325 -549844 + MLT1C LTR MaLR 1 465 -2 656 153 8 65 chr13 101323425 101323549 -549620 - FLAM_C SINE Alu -16 127 11 1290 187 0 9 chr13 101323562 101323792 -549377 - AluJb SINE Alu -1 311 84 307 199 5 73 chr13 101324804 101324995 -548174 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 388 284 86 65 chr13 101326437 101327065 -546104 - L1MEd LINE L1 -1416 4713 778 1863 139 0 7 chr13 101326773 101327054 -546115 - AluJb SINE Alu -27 285 7 381 306 86 26 chr13 101327054 101327097 -546072 + L1MC5 LINE L1 2143 8074 -167 877 305 64 28 chr13 101327623 101328167 -545002 + L1MB3 LINE L1 5620 6183 0 1360 157 67 80 chr13 101328174 101328473 -544696 + AluJb SINE Alu 2 296 -6 2381 61 7 0 chr13 101328916 101329211 -543958 - AluSq SINE Alu -16 297 1 2186 102 0 0 chr13 101330640 101330950 -542219 - AluSg SINE Alu 0 310 1 227 352 86 9 chr13 101331223 101331328 -541841 + L2 LINE L2 3193 3305 -8 1085 68 0 0 chr13 101331414 101331547 -541622 + AluSc SINE Alu 1 133 -176 2161 99 7 7 chr13 101331547 101331849 -541320 + AluSc SINE Alu 1 302 -7 1283 267 50 36 chr13 101332214 101332281 -540888 + L1ME1 LINE L1 4312 4377 -1769 2305 93 0 10 chr13 101332281 101332594 -540575 + AluSx SINE Alu 1 310 -2 1283 267 50 36 chr13 101332594 101333132 -540037 + L1ME1 LINE L1 4377 4925 -1221 * 1555 225 95 26 chr13 101333116 101333747 -539422 + L1ME1 LINE L1 5458 6147 -17 1061 123 55 21 chr13 101333753 101333972 -539197 + AluJo SINE Alu 1 296 -16 216 274 293 0 chr13 101334002 101334108 -539061 + MIR SINE MIR 13 149 -113 2125 116 3 0 chr13 101335213 101335516 -537653 + AluSx SINE Alu 1 304 -8 201 94 0 0 chr13 101335595 101335627 -537542 + (A)n Simple_repeat Simple_repeat 1 32 0 2178 114 3 3 chr13 101336254 101336561 -536608 + AluSx SINE Alu 4 310 -2 1284 117 0 0 chr13 101336562 101336741 -536428 + AluSg/x SINE Alu 131 309 -3 927 171 77 0 chr13 101336848 101337029 -536140 + AluJb SINE Alu 110 304 -8 211 307 120 0 chr13 101337306 101337381 -535788 - L2 LINE L2 -1 3312 3229 2291 43 4 0 chr13 101337612 101337888 -535281 - AluSg SINE Alu -32 278 2 23 78 0 0 chr13 101338347 101338398 -534771 + GC_rich Low_complexity Low_complexity 1 51 0 257 105 0 81 chr13 101338535 101338621 -534548 + (CGGGG)n Simple_repeat Simple_repeat 1 79 0 222 265 8 60 chr13 101338628 101338745 -534424 + G-rich Low_complexity Low_complexity 3 113 0 24 0 0 0 chr13 101339014 101339038 -534131 + AT_rich Low_complexity Low_complexity 1 24 0 2338 87 3 3 chr13 101341010 101341322 -531847 - AluSp SINE Alu -1 312 1 194 330 55 0 chr13 101341733 101341824 -531345 - MER5A DNA MER1_type -83 106 11 801 196 211 0 chr13 101342014 101342284 -530885 + MER92B LTR ERV1 1 327 -309 230 182 0 0 chr13 101342601 101342645 -530524 - L1MA9 LINE L1 -326 5986 5943 1855 164 6 3 chr13 101342647 101342958 -530211 - AluJo SINE Alu 0 312 1 354 287 66 33 chr13 101342989 101343047 -530122 + L1MC5 LINE L1 7730 7785 -176 2092 117 6 25 chr13 101343047 101343364 -529805 + AluSx SINE Alu 2 312 0 354 287 66 33 chr13 101343364 101343427 -529742 + L1MC5 LINE L1 7785 7855 -106 2062 60 92 3 chr13 101344015 101344298 -528871 - AluY SINE Alu -3 308 1 2416 45 6 22 chr13 101344636 101344949 -528220 - AluY SINE Alu -3 308 1 1863 103 52 17 chr13 101345158 101345449 -527720 + AluSx SINE Alu 11 311 -1 367 81 0 234 chr13 101345851 101346086 -527083 + (CCCCCT)n Simple_repeat Simple_repeat 1 180 0 266 125 9 210 chr13 101346228 101346514 -526655 + (TCC)n Simple_repeat Simple_repeat 1 228 0 319 117 0 217 chr13 101346561 101346791 -526378 + (CCCCCT)n Simple_repeat Simple_repeat 1 180 0 628 221 55 0 chr13 101346803 101346966 -526203 - MLT1B LTR MaLR -124 266 95 2538 42 3 0 chr13 101346966 101347311 -525858 - AluYa5 SINE Alu 0 346 1 2222 81 10 0 chr13 101347311 101347606 -525563 - AluSg SINE Alu -12 298 1 277 253 74 0 chr13 101347621 101347716 -525453 + L1MEc LINE L1 2209 2310 -4086 337 196 9 27 chr13 101347716 101347818 -525351 - Alu SINE Alu -1 301 243 2007 114 37 0 chr13 101348401 101348700 -524469 + AluSp SINE Alu 1 310 -3 257 296 0 54 chr13 101350027 101350213 -522956 + (GGGTG)n Simple_repeat Simple_repeat 2 177 0 256 345 0 0 chr13 101350597 101350762 -522407 + (GGGTG)n Simple_repeat Simple_repeat 3 167 0 242 351 0 0 chr13 101350777 101350942 -522227 + (GGGTG)n Simple_repeat Simple_repeat 3 167 0 265 308 178 19 chr13 101351236 101351444 -521725 - L2 LINE L2 -581 2733 2493 245 179 64 26 chr13 101351787 101351865 -521304 - MER34 LTR ERV1 -47 495 415 1734 153 75 68 chr13 101351912 101352046 -521123 + MER4E LTR ERV1 309 440 -339 2483 46 0 3 chr13 101352046 101352351 -520818 - AluY SINE Alu -7 304 1 1734 153 75 68 chr13 101352351 101352397 -520772 + MER4E LTR ERV1 440 484 -295 2404 75 0 0 chr13 101352397 101352702 -520467 - AluSc SINE Alu -4 305 1 1734 153 75 68 chr13 101352702 101352918 -520251 + MER4E LTR ERV1 484 709 -70 1535 183 36 42 chr13 101353056 101353412 -519757 + MER4A LTR ERV1 1 354 -310 2198 84 7 7 chr13 101353442 101353739 -519430 - AluY SINE Alu -13 298 2 2423 72 0 0 chr13 101354311 101354616 -518553 + AluSq SINE Alu 1 305 -8 32 43 0 0 chr13 101354894 101354940 -518229 + AT_rich Low_complexity Low_complexity 1 46 0 804 201 109 4 chr13 101355250 101355479 -517690 - L1MB3 LINE L1 -2 6181 5929 411 147 0 13 chr13 101355489 101355564 -517605 + LTR56 LTR ERV1 9 82 -363 2345 67 47 133 chr13 101355565 101355742 -517427 + MER41A LTR ERV1 2 193 -361 2470 47 0 28 chr13 101355742 101356062 -517107 + AluY SINE Alu 1 311 0 2345 67 47 133 chr13 101356062 101356350 -516819 + MER41A LTR ERV1 193 427 -127 2190 118 0 0 chr13 101356350 101356656 -516513 - AluSg SINE Alu 0 310 5 14662 211 13 17 chr13 101356659 101356815 -516354 - L1PB1 LINE L1 -177 5974 5819 2068 97 0 0 chr13 101356815 101357121 -516048 - AluSc SINE Alu 0 306 1 14662 211 13 17 chr13 101357121 101357764 -515405 - L1PB1 LINE L1 -332 5819 5175 2283 81 3 16 chr13 101357764 101358072 -515097 - AluSp SINE Alu -9 304 1 14662 211 13 17 chr13 101358072 101359421 -513748 - L1PB1 LINE L1 -976 5175 3822 2016 117 7 13 chr13 101359421 101359720 -513449 - AluSp SINE Alu -12 301 5 14662 211 13 17 chr13 101359720 101360631 -512538 - L1PB1 LINE L1 -2329 3822 2909 2093 104 28 0 chr13 101360631 101360920 -512249 - AluSg SINE Alu -13 297 1 14662 211 13 17 chr13 101360920 101362364 -510805 - L1PB1 LINE L1 -3242 2909 1493 2369 124 32 32 chr13 101362364 101362901 -510268 + MER41A-int LTR ERV1 1304 3928 -3888 * 12189 93 22 21 chr13 101362895 101362942 -510227 + MER41A-int LTR ERV1 4075 4120 -1826 2214 114 3 0 chr13 101362942 101363248 -509921 - AluSx SINE Alu -5 307 1 12189 93 22 21 chr13 101363248 101363955 -509214 + MER41A-int LTR ERV1 4120 4824 -1122 2291 102 0 0 chr13 101363955 101364260 -508909 - AluSx SINE Alu -7 305 1 12189 93 22 21 chr13 101364260 101364468 -508701 + MER41A-int LTR ERV1 4824 5030 -916 2226 88 0 3 chr13 101364468 101364762 -508407 + AluY SINE Alu 2 294 -17 12189 93 22 21 chr13 101364762 101365664 -507505 + MER41A-int LTR ERV1 5030 5944 -2 4206 82 15 0 chr13 101365664 101366210 -506959 + MER41A LTR ERV1 1 554 0 1180 209 98 3 chr13 101366231 101366546 -506623 + LTR56 LTR ERV1 101 445 0 487 235 3 0 chr13 101366553 101366686 -506483 - L1MB1 LINE L1 -238 5930 5809 1634 158 29 11 chr13 101366967 101367240 -505929 - AluSq SINE Alu -35 278 1 987 184 0 0 chr13 101367240 101367414 -505755 - AluJb SINE Alu -2 310 137 1812 129 46 11 chr13 101367464 101367744 -505425 + AluJo SINE Alu 1 290 -22 2177 94 3 3 chr13 101367746 101368043 -505126 + AluSp SINE Alu 1 297 -16 240 203 136 0 chr13 101368329 101368388 -504781 - MIR SINE MIR -82 180 114 275 302 31 6 chr13 101368513 101368672 -504497 + (CA)n Simple_repeat Simple_repeat 1 163 0 399 306 189 26 chr13 101369345 101369536 -503633 - L1ME4a LINE L1 0 6121 5962 2252 86 0 10 chr13 101369536 101369838 -503331 - AluSq SINE Alu -14 299 1 399 306 189 26 chr13 101369838 101369956 -503213 - L1ME4a LINE L1 -159 5962 5865 2249 77 0 3 chr13 101369956 101370253 -502916 - AluSg SINE Alu -14 296 1 399 306 189 26 chr13 101370253 101370477 -502692 - L1ME4a LINE L1 -256 5865 5500 2483 58 0 3 chr13 101370701 101371011 -502158 - AluY SINE Alu -2 309 1 239 319 89 37 chr13 101371261 101371396 -501773 - LTR67 LTR ERVL -369 188 47 746 173 15 15 chr13 101371642 101371775 -501394 - FLAM_A SINE Alu 0 133 1 477 101 0 56 chr13 101372038 101372127 -501042 - FLAM_A SINE Alu 0 142 59 2259 102 3 0 chr13 101372196 101372499 -500670 - AluSg SINE Alu -6 304 1 245 230 71 40 chr13 101373424 101373499 -499670 + HsTC2 DNA Tc2 1706 1789 -109 2210 64 0 0 chr13 101373499 101373812 -499357 + AluY SINE Alu 1 313 0 245 230 71 40 chr13 101373812 101373861 -499308 + HsTC2 DNA Tc2 1789 1835 -63 2463 58 10 0 chr13 101375036 101375344 -497825 - AluY SINE Alu 0 311 1 189 107 0 0 chr13 101375345 101375373 -497796 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 200 412 0 0 chr13 101379113 101379278 -493891 + (CCCGAA)n Simple_repeat Simple_repeat 1 165 0 290 338 86 0 chr13 101381904 101382055 -491114 + MIR3 SINE MIR 43 206 -2 190 242 30 91 chr13 101382193 101382292 -490877 + MER5A DNA MER1_type 97 189 0 463 319 50 0 chr13 101385308 101385549 -487620 - L1MB2 LINE L1 -208 5963 5711 396 355 7 0 chr13 101386644 101386796 -486373 + (TGG)n Simple_repeat Simple_repeat 2 154 0 2192 89 0 3 chr13 101387667 101387960 -485209 - AluSx SINE Alu -20 292 1 1758 151 32 0 chr13 101388069 101388354 -484815 - AluJb SINE Alu -15 297 4 1379 164 118 52 chr13 101389127 101389279 -483890 - L1M3 LINE L1 -361 5822 5681 2430 78 0 0 chr13 101389279 101389586 -483583 - AluSx SINE Alu -5 307 1 1379 164 118 52 chr13 101389586 101389781 -483388 - L1M3 LINE L1 -502 5681 5452 2500 42 7 7 chr13 101390239 101390545 -482624 + AluY SINE Alu 1 306 -5 1728 145 43 4 chr13 101391172 101391448 -481721 + AluSx SINE Alu 1 287 -25 191 81 54 0 chr13 101391449 101391486 -481683 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 1166 129 11 0 chr13 101391504 101391682 -481487 + AluJb SINE Alu 125 304 -8 237 268 67 57 chr13 101392591 101392785 -480384 - L1M4 LINE L1 -1452 4694 4499 2522 150 13 28 chr13 101394175 101394643 -478526 + MER41B LTR ERV1 1 461 -174 2440 76 0 3 chr13 101595961 101596264 -276905 + AluSc SINE Alu 1 302 -7 956 194 97 0 chr13 101596440 101596646 -276523 + L1MB7 LINE L1 5333 5558 -616 582 42 0 0 chr13 101596646 101596718 -276451 + L1PA5 LINE L1 6080 6151 -3 2985 158 70 18 chr13 101596765 101597368 -275801 + L1MB7 LINE L1 5551 6184 0 2406 87 0 7 chr13 101598128 101598458 -274711 + AluSg SINE Alu 1 328 0 37 0 0 0 chr13 101598572 101598609 -274560 + AT_rich Low_complexity Low_complexity 1 37 0 1067 94 0 14 chr13 101598617 101598755 -274414 - AluSx SINE Alu -144 168 33 805 156 0 15 chr13 101598833 101598968 -274201 + FLAM_C SINE Alu 1 133 0 211 292 0 15 chr13 101599132 101599197 -273972 + MIR SINE MIR 11 74 -188 231 233 17 17 chr13 101600079 101600139 -273030 + GA-rich Low_complexity Low_complexity 2 61 0 224 113 16 48 chr13 101600151 101600213 -272956 + (GGA)n Simple_repeat Simple_repeat 1 60 0 * 275 352 11 34 chr13 101600210 101600389 -272780 + GA-rich Low_complexity Low_complexity 1 175 0 * 344 246 34 23 chr13 101600362 101600537 -272632 + A-rich Low_complexity Low_complexity 4 180 0 * 466 172 45 19 chr13 101600494 101600651 -272518 + GA-rich Low_complexity Low_complexity 5 165 0 1466 167 39 68 chr13 101602007 101602318 -270851 + AluJb SINE Alu 1 302 -10 432 178 59 18 chr13 101602631 101602935 -270234 + (TG)n Simple_repeat Simple_repeat 1 316 0 210 274 14 14 chr13 101603174 101603247 -269922 + L2 LINE L2 2857 2929 -384 621 95 32 11 chr13 101604891 101604986 -268183 - LTR24B LTR ERV1 -479 97 1 1016 164 177 64 chr13 101605114 101605425 -267744 - MLT1D LTR MaLR -97 408 63 1905 133 82 58 chr13 101605500 101605927 -267242 + LTR23 LTR ERV1 1 437 0 645 118 18 0 chr13 101606054 101606164 -267005 + MSTA LTR MaLR 1 112 -316 1133 361 37 58 chr13 101606167 101606504 -266665 + MSTA LTR MaLR 58 388 -40 2204 117 0 3 chr13 101606504 101606812 -266357 - AluSq SINE Alu -6 307 1 1133 361 37 58 chr13 101606812 101606853 -266316 + MSTA LTR MaLR 388 428 0 2357 140 8 0 chr13 101606853 101607217 -265952 + MSTA-int LTR MaLR 1 367 -1284 990 264 153 5 chr13 101607217 101607596 -265573 + LTR34 LTR ERV1 261 695 -4 23 54 0 0 chr13 101607919 101607956 -265213 + AT_rich Low_complexity Low_complexity 1 37 0 2173 179 82 2 chr13 101607957 101608381 -264788 - LTR24 LTR ERV1 0 467 10 1061 280 138 22 chr13 101608591 101609141 -264028 - L1MC4a LINE L1 -1880 5928 5315 1806 159 31 7 chr13 101611015 101611305 -261864 - AluJo SINE Alu -7 305 9 189 259 153 55 chr13 101611583 101611819 -261350 + L2 LINE L2 2679 2937 -377 21 0 0 0 chr13 101613729 101613750 -259419 + AT_rich Low_complexity Low_complexity 1 21 0 648 258 11 6 chr13 101613751 101613929 -259240 - L1MB8 LINE L1 -13 6165 5987 2096 108 3 17 chr13 101613933 101614229 -258940 - AluY SINE Alu -18 293 2 923 139 0 35 chr13 101614235 101614379 -258790 - AluJo SINE Alu -173 139 1 492 202 44 87 chr13 101614959 101615142 -258027 - MIR SINE MIR -86 176 2 1831 166 7 10 chr13 101615490 101615791 -257378 + AluJo SINE Alu 1 300 -12 194 149 64 43 chr13 101616357 101616404 -256765 + MER5B DNA MER1_type 128 175 -3 370 103 46 126 chr13 101616501 101616588 -256581 + MER20 DNA MER1_type 1 80 -139 509 139 13 0 chr13 101618007 101618086 -255083 - MADE1 DNA Mariner 0 80 1 316 247 56 0 chr13 101618996 101619085 -254084 + MER5A DNA MER1_type 9 102 -87 260 169 0 17 chr13 101620628 101620687 -252482 + CT-rich Low_complexity Low_complexity 3 60 0 1428 142 75 41 chr13 101620712 101620980 -252189 - AluJo SINE Alu -35 277 1 24 41 0 20 chr13 101621081 101621108 -252061 + AT_rich Low_complexity Low_complexity 1 28 -20 2018 139 10 3 chr13 101621108 101621396 -251773 + AluSq SINE Alu 1 290 -23 24 41 0 20 chr13 101621396 101621417 -251752 + AT_rich Low_complexity Low_complexity 28 48 0 313 267 112 9 chr13 101621792 101621908 -251261 + MIR SINE MIR 20 147 -115 2179 129 0 0 chr13 101621911 101622206 -250963 + AluSx SINE Alu 1 295 -17 3241 106 23 81 chr13 101622428 101622987 -250182 - MER1A DNA MER1_type 0 527 1 1007 192 0 6 chr13 101623544 101623721 -249448 + AluJo SINE Alu 127 302 -10 2252 112 3 0 chr13 101623723 101624027 -249142 + AluSx SINE Alu 1 305 -7 631 248 128 13 chr13 101624749 101624975 -248194 + MIR SINE MIR 8 259 -3 193 281 105 41 chr13 101624971 101625142 -248027 - L3 LINE CR1 -715 862 681 * 1055 198 62 33 chr13 101625156 101625398 -247771 - MLT1A2 LTR MaLR 0 374 126 501 221 71 52 chr13 101625805 101625959 -247210 - MLT1A2 LTR MaLR -233 157 1 425 363 44 19 chr13 101625982 101626252 -246917 - L3 LINE CR1 -1019 558 282 1205 182 0 15 chr13 101626364 101626567 -246602 + AluJo SINE Alu 1 200 -112 2462 266 53 17 chr13 101626732 101626919 -246250 - L1MEc LINE L1 -3217 3165 2986 2418 79 3 3 chr13 101626919 101627223 -245946 + AluSx SINE Alu 1 304 -8 2462 266 53 17 chr13 101627223 101628217 -244952 - L1MEc LINE L1 -3396 2986 1933 2125 113 107 19 chr13 101628217 101628581 -244588 + MER4B LTR ERV1 1 396 -214 358 330 0 0 chr13 101628606 101628709 -244460 - L1MEc LINE L1 -4599 1785 1683 230 248 99 87 chr13 101628709 101628870 -244299 - L1MEc LINE L1 -4504 2321 2159 1014 167 109 5 chr13 101628963 101629173 -243996 + MER46A DNA MER2_type 5 236 0 1492 173 47 4 chr13 101629176 101629431 -243738 - AluJo SINE Alu -33 279 14 1544 212 27 46 chr13 101629439 101629811 -243358 - L1MEc LINE L1 -6164 378 14 2372 97 0 0 chr13 101631288 101631597 -241572 - AluSg SINE Alu -1 309 1 2873 197 43 25 chr13 101631730 101632328 -240841 - MER82 DNA MER2_type -25 628 20 2003 147 13 3 chr13 101632328 101632627 -240542 + AluSx SINE Alu 1 302 -10 335 194 245 43 chr13 101633935 101634074 -239095 + MER5A DNA MER1_type 22 188 -1 272 371 81 15 chr13 101634376 101634573 -238596 - L2 LINE L2 0 3272 3063 198 320 20 69 chr13 101634956 101635159 -238010 - L2 LINE L2 -887 2427 2235 303 278 0 0 chr13 101635798 101635888 -237281 + MER103 DNA DNA 2 91 -75 556 209 171 5 chr13 101636931 101637141 -236028 - HsTC2b DNA Tc2 -3 915 671 403 294 173 23 chr13 101637209 101637515 -235654 - HsTC2b DNA Tc2 -560 355 4 2310 77 0 45 chr13 101637778 101638089 -235080 + AluSc SINE Alu 1 297 -12 2011 119 27 10 chr13 101638126 101638420 -234749 - AluSq SINE Alu -14 299 1 397 224 68 54 chr13 101638454 101638601 -234568 - L1MC5 LINE L1 -51 7910 7762 2138 114 3 7 chr13 101639331 101639629 -233540 - AluSp SINE Alu -16 297 1 1574 176 14 14 chr13 101639635 101639913 -233256 - MER51A-int LTR ERV1 -3588 2358 2081 2293 77 0 10 chr13 101640210 101640507 -232662 - AluY SINE Alu -17 294 1 2022 99 30 43 chr13 101640879 101641181 -231988 + AluSq SINE Alu 1 298 -15 257 250 0 0 chr13 101641450 101641522 -231647 - MER51A-int LTR ERV1 -5576 2180 2109 1494 158 58 34 chr13 101641560 101641852 -231317 - MER51A-int LTR ERV1 -4560 320 22 355 101 87 43 chr13 101641898 101641967 -231202 - MER51A-int LTR ERV1 -7744 72 1 1028 141 310 15 chr13 101641967 101642304 -230865 - MER51A LTR ERV1 0 640 1 857 172 45 6 chr13 101642355 101642512 -230657 + FRAM SINE Alu 9 171 -5 552 220 88 25 chr13 101642516 101642675 -230494 + L1ME3 LINE L1 5436 5604 -560 372 275 109 35 chr13 101642679 101643099 -230070 - MLT1H LTR MaLR 0 549 26 988 297 52 44 chr13 101643133 101643370 -229799 + L1ME3 LINE L1 5617 5851 -311 2229 98 0 3 chr13 101643370 101643675 -229494 - AluSx SINE Alu -4 308 5 988 297 52 44 chr13 101643675 101643744 -229425 + L1ME3 LINE L1 5851 5918 -244 2662 115 52 2 chr13 101643744 101644152 -229017 - MSTA LTR MaLR 0 428 1 988 297 52 44 chr13 101644152 101644342 -228827 + L1ME3 LINE L1 5918 6118 -44 230 282 118 12 chr13 101644408 101644493 -228676 + MIR SINE MIR 44 137 -71 2503 59 0 0 chr13 101644588 101644894 -228275 - AluY SINE Alu -5 306 1 2262 67 0 23 chr13 101645154 101645454 -227715 - AluY SINE Alu -18 293 1 2362 200 139 10 chr13 101646368 101647032 -226137 - L1MD3 LINE L1 0 7995 6999 8834 134 88 112 chr13 101647040 101647229 -225940 - Tigger1 DNA MER2_type 0 2418 2226 1655 90 0 55 chr13 101647229 101647485 -225684 + AluSg/x SINE Alu 69 310 0 8834 134 88 112 chr13 101647485 101647932 -225237 - Tigger1 DNA MER2_type -192 2226 1770 778 191 7 0 chr13 101647932 101648073 -225096 - FLAM_A SINE Alu 0 142 1 8834 134 88 112 chr13 101648073 101649258 -223911 - Tigger1 DNA MER2_type -648 1770 503 2009 258 77 8 chr13 101649261 101649283 -223886 - L1M4 LINE L1 -4952 1590 1571 184 0 97 0 chr13 101649283 101649314 -223855 + T-rich Low_complexity Low_complexity 2 35 0 2009 258 77 8 chr13 101649314 101650008 -223161 - L1M4 LINE L1 -4971 1571 825 1556 177 10 13 chr13 101650010 101650309 -222860 - AluJo SINE Alu -14 298 1 287 320 0 39 chr13 101650551 101650704 -222465 - L1M4 LINE L1 -6394 148 2 2433 69 0 0 chr13 101650755 101651058 -222111 + AluY SINE Alu 1 303 -8 1982 132 0 0 chr13 101651646 101651942 -221227 - AluSx SINE Alu -16 296 1 22 0 0 0 chr13 101651954 101651976 -221193 + AT_rich Low_complexity Low_complexity 1 22 0 182 305 47 55 chr13 101653101 101653229 -219940 + L3 LINE CR1 903 1029 -548 23 0 0 0 chr13 101654206 101654229 -218940 + AT_rich Low_complexity Low_complexity 1 23 0 1679 71 104 26 chr13 101654720 101654989 -218180 + AluSx SINE Alu 1 290 -22 21 82 0 0 chr13 101655264 101655313 -217856 + GC_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chr13 101655958 101655988 -217181 + GC_rich Low_complexity Low_complexity 1 30 0 1582 116 53 42 chr13 101656554 101656839 -216330 - AluJb SINE Alu -24 288 1 31 26 0 0 chr13 101656919 101656957 -216212 + AT_rich Low_complexity Low_complexity 1 38 0 1942 111 0 0 chr13 101657601 101657872 -215297 + AluSg SINE Alu 1 271 -39 222 171 0 0 chr13 101657877 101657918 -215251 + (TG)n Simple_repeat Simple_repeat 2 42 0 1854 148 0 7 chr13 101657934 101658231 -214938 + AluSx SINE Alu 1 295 -17 361 169 0 0 chr13 101658246 101658305 -214864 - L1M3 LINE L1 -585 5583 5525 812 141 7 7 chr13 101658329 101658464 -214705 - FLAM_C SINE Alu 0 143 9 1724 176 44 22 chr13 101658495 101658859 -214310 - L1M3 LINE L1 -1029 5117 4746 1089 157 117 68 chr13 101659299 101659580 -213589 + MSTD LTR MaLR 102 396 0 819 288 66 40 chr13 101659657 101660383 -212786 - L1M3 LINE L1 -1857 4289 3545 6272 141 50 6 chr13 101660500 101661692 -211477 - L1MC1 LINE L1 -1 6332 5089 2331 90 0 0 chr13 101661893 101662192 -210977 + AluSc SINE Alu 1 299 -10 2206 99 3 6 chr13 101663370 101663684 -209485 - AluSp SINE Alu 0 313 1 349 234 14 50 chr13 101664290 101664431 -208738 + GA-rich Low_complexity Low_complexity 1 136 0 317 125 0 62 chr13 101664752 101664816 -208353 - L1PA16 LINE L1 0 6166 6107 235 209 0 0 chr13 101664859 101664902 -208267 - L1PA16 LINE L1 -17 6149 6107 232 186 0 0 chr13 101665074 101665117 -208052 - L1PA16 LINE L1 -17 6149 6107 245 163 0 0 chr13 101665160 101665203 -207966 - L1PA16 LINE L1 -17 6149 6107 232 186 0 0 chr13 101665246 101665289 -207880 - L1PA16 LINE L1 -17 6149 6107 864 170 33 7 chr13 101665289 101665442 -207727 - L1PA15 LINE L1 -17 6148 5992 2164 69 4 0 chr13 101665470 101665745 -207424 + AluSg SINE Alu 29 304 -6 2153 105 0 0 chr13 101665751 101666045 -207124 + AluSx SINE Alu 1 294 -18 622 207 0 0 chr13 101666490 101666601 -206568 + AluJo/FLAM SINE Alu 2 112 -200 809 144 0 8 chr13 101666601 101666733 -206436 - AluJb SINE Alu -181 131 1 256 0 0 0 chr13 101666895 101666924 -206245 + AluY SINE Alu 258 286 -15 2449 65 0 3 chr13 101666924 101667232 -205937 + AluY SINE Alu 1 307 -4 209 333 15 0 chr13 101667841 101667907 -205262 + L2 LINE L2 3198 3264 -49 2583 211 68 36 chr13 101667907 101668197 -204972 + MER21B LTR ERV1 25 304 -559 2173 105 3 0 chr13 101668197 101668493 -204676 + AluSg SINE Alu 1 297 -13 2583 211 68 36 chr13 101668493 101668895 -204274 + MER21B LTR ERV1 304 739 -124 2038 117 3 0 chr13 101669643 101669943 -203226 + AluSg SINE Alu 1 301 -9 1155 131 0 0 chr13 101669944 101670112 -203057 + AluSg/x SINE Alu 124 291 -19 2269 93 0 3 chr13 101670183 101670484 -202685 + AluSq SINE Alu 1 300 -13 1025 138 0 0 chr13 101670484 101670644 -202525 + AluSg/x SINE Alu 134 293 -19 314 282 48 10 chr13 101670723 101670826 -202343 - L1ME LINE L1 -296 5825 5719 315 332 65 58 chr13 101671232 101671509 -201660 - HAL1 LINE L1 -1132 1375 1097 1841 119 11 18 chr13 101672433 101672627 -200542 - AluSx SINE Alu 0 330 137 1999 125 13 0 chr13 101672627 101672930 -200239 - AluSp SINE Alu -6 307 1 1841 119 11 18 chr13 101672930 101673067 -200102 - AluSx SINE Alu -193 137 1 870 116 0 22 chr13 101673067 101673205 -199964 - AluSq/x SINE Alu -177 135 1 2233 90 0 7 chr13 101673272 101673572 -199597 + AluY SINE Alu 1 298 -13 941 163 84 0 chr13 101674705 101674883 -198286 - L1MD2 LINE L1 -337 6022 5830 2159 93 7 0 chr13 101674912 101675203 -197966 + AluSq SINE Alu 1 293 -20 2069 125 0 0 chr13 101675596 101675899 -197270 + AluSq SINE Alu 1 303 -10 204 260 0 0 chr13 101677979 101678029 -195140 - MIR SINE MIR -13 249 200 324 0 0 0 chr13 101678117 101678153 -195016 + (TG)n Simple_repeat Simple_repeat 2 37 0 316 256 238 89 chr13 101678748 101679029 -194140 + L1ME4a LINE L1 5797 6119 -2 182 222 0 0 chr13 101679067 101679103 -194066 - L2 LINE L2 -1388 1926 1891 675 210 6 49 chr13 101679113 101679275 -193894 - L2 LINE L2 -1 3312 3158 1367 249 97 7 chr13 101680266 101680711 -192458 + Charlie4a DNA MER1_type 22 506 -2 689 286 58 10 chr13 101680733 101680939 -192230 - MIR SINE MIR 0 262 47 3003 108 0 2 chr13 101681276 101681673 -191496 + MER1A DNA MER1_type 1 396 -133 372 185 49 0 chr13 101681714 101681795 -191374 + MER4D LTR ERV1 787 871 -1 1516 193 106 3 chr13 101682193 101682541 -190628 - L1MB8 LINE L1 -11 6978 6595 1107 272 95 44 chr13 101682577 101682606 -190563 + L1M4 LINE L1 143 169 -6690 2385 87 3 0 chr13 101682606 101682917 -190252 + AluSx SINE Alu 1 312 0 1107 272 95 44 chr13 101682917 101683383 -189786 + L1M4 LINE L1 169 663 -6196 812 207 12 0 chr13 101683462 101683631 -189538 + L1M4 LINE L1 4971 5141 -1816 * 3304 194 56 31 chr13 101683626 101684566 -188603 - L1MB8 LINE L1 -487 6502 5525 2586 147 64 0 chr13 101684566 101684987 -188182 + MER83 LTR ERV1 1 448 0 3304 194 56 31 chr13 101684987 101685133 -188036 - L1MB8 LINE L1 -1464 5525 5384 2177 110 110 22 chr13 101685157 101685522 -187647 + MER61C LTR ERV1 38 434 0 1578 219 33 3 chr13 101685529 101685918 -187251 - L1MB8 LINE L1 -1586 5371 4971 1831 272 92 30 chr13 101685930 101686659 -186510 - L1MB8 LINE L1 -6075 784 11 722 152 0 0 chr13 101686738 101686864 -186305 + L1ME LINE L1 5685 5810 -354 551 247 86 5 chr13 101686861 101687141 -186028 + L1MA10 LINE L1 5863 6321 -1 * 21 0 0 0 chr13 101687619 101687640 -185529 + AT_rich Low_complexity Low_complexity 1 21 0 228 344 78 0 chr13 101687818 101687946 -185223 + L3b LINE CR1 1184 1321 -262 268 301 142 0 chr13 101688134 101688317 -184852 + MIR SINE MIR 22 230 -32 1742 73 8 4 chr13 101690589 101690837 -182332 + AluSc SINE Alu 61 309 0 1845 129 0 7 chr13 101690847 101691126 -182043 + AluSx SINE Alu 19 295 -17 3429 136 57 24 chr13 101691258 101691839 -181330 + MER4D LTR ERV1 1 600 -303 2113 81 19 39 chr13 101692415 101692722 -180447 - AluY SINE Alu -10 301 1 192 302 165 48 chr13 101693100 101693604 -179565 - L2 LINE L2 -428 2886 2324 556 224 56 0 chr13 101693778 101693921 -179248 + L1MC4 LINE L1 7092 7242 -800 920 219 246 35 chr13 101693995 101694502 -178667 - L1MC5 LINE L1 -387 7574 6961 1009 148 6 0 chr13 101694753 101694937 -178232 - AluSg/x SINE Alu 0 304 120 874 328 30 17 chr13 101694941 101695401 -177768 - L1MC5 LINE L1 -1888 5920 5455 403 314 15 6 chr13 101696046 101696277 -176892 + BSR/Beta Satellite Satellite 1 233 -16 7072 50 0 0 chr13 101696461 101697309 -175860 - L1PA5 LINE L1 0 6154 5307 16852 41 2 0 chr13 101697309 101699350 -173819 + L1PA5 LINE L1 3249 5293 -853 5056 208 44 93 chr13 101699663 101700711 -172458 - L1MCa LINE L1 -2137 4289 3191 2336 76 0 10 chr13 101700711 101701025 -172144 - AluY SINE Alu 0 311 1 5056 208 44 93 chr13 101701025 101701231 -171938 - L1MCa LINE L1 -3235 3191 2976 1710 137 41 17 chr13 101701231 101701524 -171645 - AluJo SINE Alu -12 300 1 5056 208 44 93 chr13 101701524 101702504 -170665 - L1MCa LINE L1 -3450 2976 2078 7571 156 118 64 chr13 101702504 101704148 -169021 - MER52A LTR ERV1 0 1755 7 2574 149 40 57 chr13 101704536 101705363 -167806 - L1MCa LINE L1 -4344 2082 1242 1792 158 0 10 chr13 101705363 101705654 -167515 - AluJo SINE Alu -23 289 2 2574 149 40 57 chr13 101705654 101705675 -167494 - L1MCa LINE L1 -5184 1242 1222 1046 192 40 164 chr13 101705675 101706053 -167116 + MLT1A2 LTR MaLR 1 323 -51 2055 96 7 3 chr13 101706053 101706357 -166812 + AluSx SINE Alu 1 305 0 1046 192 40 164 chr13 101706357 101706404 -166765 + MLT1A2 LTR MaLR 323 374 0 2574 149 40 57 chr13 101706404 101706481 -166688 - L1MCa LINE L1 -5204 1222 1082 2497 185 17 58 chr13 101706582 101707232 -165937 + LTR5 LTR ERVK 1 623 -346 918 148 11 42 chr13 101707562 101707751 -165418 + LTR5 LTR ERVK 787 969 0 805 117 0 0 chr13 101709711 101709822 -163347 + AluSq/x SINE Alu 1 111 -201 268 22 44 22 chr13 101709839 101709884 -163285 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 339 286 20 20 chr13 101710651 101710798 -162371 + CT-rich Low_complexity Low_complexity 4 150 0 1487 174 7 4 chr13 101711813 101712088 -161081 + AluJo SINE Alu 22 297 -15 1571 104 4 33 chr13 101712235 101712476 -160693 + AluSx SINE Alu 50 283 -29 704 213 107 15 chr13 101712494 101712600 -160569 - L1MC2 LINE L1 -5 6339 6244 1010 149 154 19 chr13 101712600 101712808 -160361 + MER46A DNA MER2_type 1 236 0 704 213 107 15 chr13 101712808 101712898 -160271 - L1MC2 LINE L1 -100 6244 6125 1228 80 0 0 chr13 101712898 101713060 -160109 - AluSg/x SINE Alu -7 305 144 1942 126 3 7 chr13 101713061 101713362 -159807 + AluSp SINE Alu 14 313 0 2159 105 3 3 chr13 101713375 101713680 -159489 + AluSp SINE Alu 1 305 -8 2180 200 180 46 chr13 101713697 101714511 -158658 - L1MB8 LINE L1 -51 6127 5202 22 0 0 0 chr13 101715220 101715242 -157927 + GC_rich Low_complexity Low_complexity 1 22 0 2050 170 79 26 chr13 101715700 101715734 -157435 - L1MB3 LINE L1 0 6183 6152 1974 95 20 3 chr13 101715734 101716028 -157141 + AluSx SINE Alu 1 299 -13 2050 170 79 26 chr13 101716028 101716447 -156722 - L1MB3 LINE L1 -31 6152 5706 900 207 48 0 chr13 101716453 101716724 -156445 - L1MB8 LINE L1 -2931 3215 2932 2519 41 0 10 chr13 101716726 101717040 -156129 - AluY SINE Alu 0 311 1 1143 168 144 39 chr13 101718001 101718350 -154819 - Charlie2a DNA MER1_type -1306 1556 1156 902 199 182 65 chr13 101718350 101718420 -154749 - LTR37B LTR ERV1 0 468 408 1702 95 0 0 chr13 101718420 101718652 -154517 - AluSc SINE Alu -5 304 73 902 199 182 65 chr13 101718652 101718998 -154171 - LTR37B LTR ERV1 -60 408 3 1143 168 144 39 chr13 101718998 101719058 -154111 - Charlie2a DNA MER1_type -1706 1156 1104 1157 129 0 0 chr13 101720463 101720633 -152536 - AluSg/x SINE Alu -14 298 129 2106 77 17 30 chr13 101720745 101721043 -152126 + AluY SINE Alu 1 294 -17 1882 236 105 26 chr13 101721906 101722118 -151051 - Charlie2a DNA MER1_type -602 2260 2066 2005 123 0 7 chr13 101722118 101722411 -150758 + AluSx SINE Alu 1 291 -21 1882 236 105 26 chr13 101722411 101722818 -150351 - Charlie2a DNA MER1_type -796 2066 1592 899 261 99 36 chr13 101722789 101723161 -150008 - Charlie2a DNA MER1_type -1495 1367 951 * 2069 101 0 14 chr13 101723161 101723457 -149712 - AluSx SINE Alu -20 292 1 899 261 99 36 chr13 101723457 101723610 -149559 - Charlie2a DNA MER1_type -1911 951 809 677 205 0 0 chr13 101723682 101723804 -149365 - FAM SINE Alu -28 157 36 319 224 146 114 chr13 101723972 101724218 -148951 - MIR SINE MIR 0 262 9 319 312 135 76 chr13 101725268 101726070 -147099 + L1M2 LINE L1 515 1363 -5486 231 184 61 0 chr13 101726606 101726655 -146514 - L1MD3 LINE L1 -225 7770 7719 472 274 73 0 chr13 101727933 101728097 -145072 + L1M2 LINE L1 3408 3583 -3265 332 267 57 0 chr13 101728513 101728618 -144551 - MER65A LTR ERV1 -334 111 1 2716 133 19 7 chr13 101729053 101729482 -143687 + MER57B LTR ERV1 1 434 0 2709 173 22 32 chr13 101729503 101729612 -143557 + MER57B-int LTR ERV1 340 449 -4768 2683 96 6 0 chr13 101729612 101729965 -143204 - THE1A LTR MaLR 0 355 1 2709 173 22 32 chr13 101729965 101730028 -143141 + MER57B-int LTR ERV1 449 511 -4706 1004 93 0 0 chr13 101730028 101730167 -143002 - L1PA7 LINE L1 0 6154 6016 2709 173 22 32 chr13 101730167 101731162 -142007 + MER57B-int LTR ERV1 511 840 -4377 759 117 0 17 chr13 101731159 101731279 -141890 + MER57B-int LTR ERV1 1897 2014 -3932 * 271 200 55 0 chr13 101731278 101731333 -141836 + MER57B-int LTR ERV1 2167 2224 -3722 * 2328 105 29 16 chr13 101731324 101731705 -141464 + MER57B-int LTR ERV1 3355 3740 -3797 17673 92 76 57 chr13 101731719 101732131 -141038 + MER57B-int LTR ERV1 4633 5036 -2501 1813 116 0 4 chr13 101732131 101732418 -140751 - AluSx SINE Alu 0 312 27 17673 92 76 57 chr13 101732418 101734855 -138314 + MER57B-int LTR ERV1 5036 7537 0 2643 130 48 0 chr13 101734855 101735269 -137900 + MER57B LTR ERV1 1 434 0 203 156 0 0 chr13 101736826 101736858 -136311 + CT-rich Low_complexity Low_complexity 1 32 0 520 240 36 56 chr13 101737047 101737243 -135926 - MER20 DNA MER1_type -26 193 2 227 306 141 22 chr13 101737785 101737970 -135199 + MIR SINE MIR 1 216 -46 429 321 36 73 chr13 101738063 101738337 -134832 - L3 LINE CR1 -134 1443 1180 2342 100 0 0 chr13 101739344 101739655 -133514 - AluSx SINE Alu -1 311 1 8489 109 8 4 chr13 101741729 101743983 -129186 + L1PA10 LINE L1 3914 6182 0 3104 24 21 3 chr13 101744711 101745087 -128082 - L1PA4 LINE L1 0 6155 5773 2245 55 16 51 chr13 101745384 101745695 -127474 + AluSp SINE Alu 1 300 -13 226 289 91 43 chr13 101745708 101745961 -127208 + HAL1 LINE L1 918 1182 -1325 911 79 0 40 chr13 101746706 101746832 -126337 - AluSg/x SINE Alu -19 293 173 461 222 46 0 chr13 101746861 101746969 -126200 + FRAM SINE Alu 1 113 -63 300 203 29 72 chr13 101747392 101747530 -125639 + (ATGGTG)n Simple_repeat Simple_repeat 1 132 0 213 137 14 55 chr13 101747564 101747637 -125532 + (ATG)n Simple_repeat Simple_repeat 1 70 0 377 168 34 67 chr13 101747646 101747795 -125374 + (ATGGTG)n Simple_repeat Simple_repeat 4 147 0 248 226 12 48 chr13 101748499 101748583 -124586 - MER34 LTR ERV1 -12 530 450 403 339 129 0 chr13 101748945 101749116 -124053 + MIR SINE MIR 51 243 -19 379 297 70 32 chr13 101749230 101749415 -123754 - MARNA DNA Mariner -133 453 262 261 315 39 31 chr13 101749469 101749596 -123573 + MIR SINE MIR 45 172 -90 207 39 0 0 chr13 101750656 101750682 -122487 + MER5A DNA MER1_type 2 27 -162 366 263 59 8 chr13 101750736 101750751 -122418 + MER5A DNA MER1_type 3 16 -173 313 264 66 19 chr13 101750751 101750857 -122312 - MER81 DNA DNA -3 111 1 366 263 59 8 chr13 101750857 101750959 -122210 + MER5A DNA MER1_type 16 126 -63 190 23 23 114 chr13 101759270 101759314 -113855 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 286 147 26 43 chr13 101759650 101759766 -113403 + (CGTG)n Simple_repeat Simple_repeat 1 114 0 222 309 64 11 chr13 101760051 101760145 -113024 - MIR3 SINE MIR -8 200 102 21 36 0 0 chr13 101761709 101761737 -111432 + AT_rich Low_complexity Low_complexity 1 28 0 1232 272 25 2 chr13 101761742 101762139 -111030 + L1MB3 LINE L1 5752 6157 -26 228 360 11 0 chr13 101762555 101762644 -110525 - L2 LINE L2 -533 2781 2692 800 293 86 3 chr13 101764302 101764616 -108553 - MER7A DNA MER2_type -8 338 1 437 247 0 0 chr13 101764806 101764903 -108266 + MER63 DNA MER1_type 940 1036 -24 328 294 0 0 chr13 101764910 101765012 -108157 + (CA)n Simple_repeat Simple_repeat 1 102 0 23 0 0 0 chr13 101765864 101765887 -107282 + GC_rich Low_complexity Low_complexity 1 23 0 569 222 6 0 chr13 101766781 101766957 -106212 + (TG)n Simple_repeat Simple_repeat 1 177 0 239 307 47 14 chr13 101768806 101768934 -104235 + MIR SINE MIR 41 172 -67 667 170 7 59 chr13 101770901 101771036 -102133 - FLAM_A SINE Alu -5 128 1 235 391 27 9 chr13 101771752 101771862 -101307 + MIR SINE MIR 34 145 -117 187 207 0 58 chr13 101774048 101774135 -99034 + (CATG)n Simple_repeat Simple_repeat 3 84 0 216 321 0 0 chr13 101774188 101774353 -98816 + (CA)n Simple_repeat Simple_repeat 2 166 0 929 212 58 35 chr13 101774912 101775144 -98025 - L1M4 LINE L1 -739 5445 5207 2218 104 0 7 chr13 101775144 101775452 -97717 - AluSq SINE Alu -1 312 7 929 212 58 35 chr13 101775452 101775652 -97517 - L1M4 LINE L1 -977 5207 5013 2557 48 0 0 chr13 101780858 101781168 -92001 - AluY SINE Alu -1 310 1 515 296 43 5 chr13 101781219 101781405 -91764 - L1ME1 LINE L1 -46 6120 5928 2974 243 73 47 chr13 101781547 101782453 -90716 - L1ME1 LINE L1 -424 5742 4789 2086 197 17 86 chr13 101782453 101782975 -90194 + MER66B LTR ERV1 1 486 0 2974 243 73 47 chr13 101782975 101783654 -89515 - L1ME1 LINE L1 -1377 4789 4129 376 240 67 13 chr13 101784857 101785007 -88162 + (CGGGG)n Simple_repeat Simple_repeat 1 158 0 225 345 95 12 chr13 101786876 101787044 -86125 - MER5A DNA MER1_type -5 184 3 693 168 117 0 chr13 101787491 101787628 -85541 - AluJb SINE Alu -159 153 1 362 266 75 29 chr13 101790970 101791143 -82026 - L1MD2 LINE L1 -65 6294 6114 764 251 71 50 chr13 101791146 101791525 -81644 - L1MB3 LINE L1 -1 6182 5796 2457 74 3 0 chr13 101792187 101792497 -80672 + AluSp SINE Alu 1 311 -2 354 190 58 7 chr13 101793490 101793592 -79577 - L1MC2 LINE L1 -1 6343 6237 237 292 171 0 chr13 101793757 101793973 -79196 - L1ME1 LINE L1 -2868 3278 3026 468 268 36 30 chr13 101794172 101794340 -78829 - L1ME1 LINE L1 -3140 3006 2838 311 214 46 52 chr13 101795423 101795596 -77573 + (GTGTG)n Simple_repeat Simple_repeat 5 176 0 289 270 35 23 chr13 101795806 101795980 -77189 + (GTGTG)n Simple_repeat Simple_repeat 5 180 0 232 302 17 9 chr13 101796047 101796163 -77006 + (GTGTG)n Simple_repeat Simple_repeat 3 119 0 225 295 0 0 chr13 101796269 101796330 -76839 + THE1B LTR MaLR 190 250 -114 460 126 46 0 chr13 101801666 101801753 -71416 - MSTA LTR MaLR -3 425 335 350 312 58 0 chr13 101803864 101804018 -69151 - MER58 DNA MER1_type -2170 250 88 482 261 85 7 chr13 101806649 101806802 -66367 + HERV16 LTR ERVL 561 725 -4271 366 305 67 18 chr13 101806836 101807059 -66110 + HERV16 LTR ERVL 792 1025 -3971 1101 235 77 36 chr13 101808074 101808486 -64683 + MER101 LTR ERV1 10 443 -31 2340 64 13 7 chr13 101808486 101808784 -64385 - AluSp SINE Alu -13 300 1 1101 235 77 36 chr13 101808784 101808814 -64355 + MER101 LTR ERV1 443 470 -4 286 259 0 0 chr13 101809072 101809130 -64039 + L2 LINE L2 3212 3269 -3 220 246 29 14 chr13 101810891 101810960 -62209 + MIR SINE MIR 68 137 -71 344 291 28 35 chr13 101812801 101812942 -60227 - L1ME4a LINE L1 -15 6106 5967 251 253 132 21 chr13 101815914 101816033 -57136 + MIR SINE MIR 49 146 -62 240 221 0 0 chr13 101816153 101816230 -56939 + CT-rich Low_complexity Low_complexity 1 77 0 206 197 82 0 chr13 101816316 101816377 -56792 + (CCCG)n Simple_repeat Simple_repeat 4 69 0 549 185 0 19 chr13 101817590 101817698 -55471 + Tigger7 DNA MER2_type 33 138 -567 251 230 29 23 chr13 101818660 101818834 -54335 + (GGGTG)n Simple_repeat Simple_repeat 4 178 0 1500 157 79 0 chr13 101819386 101819653 -53516 + AluJo SINE Alu 1 288 -24 193 261 108 0 chr13 101820308 101820373 -52796 - L2 LINE L2 -40 3273 3202 257 305 23 50 chr13 101820532 101820740 -52429 - L2 LINE L2 -302 3011 2802 213 282 13 51 chr13 101821776 101821854 -51315 + MER5B DNA MER1_type 6 80 -98 1960 87 3 35 chr13 101821890 101822176 -50993 + AluSc SINE Alu 33 309 0 614 290 49 4 chr13 101822813 101823058 -50111 + L1M4 LINE L1 5450 5705 -473 949 290 95 27 chr13 101823177 101823660 -49509 + L1MB7 LINE L1 5669 6184 0 232 202 64 9 chr13 101823766 101823875 -49294 + (TA)n Simple_repeat Simple_repeat 1 115 0 261 288 34 17 chr13 101824458 101824635 -48534 + (CA)n Simple_repeat Simple_repeat 1 180 0 253 301 35 12 chr13 101824799 101824972 -48197 + (CA)n Simple_repeat Simple_repeat 1 177 0 200 262 168 28 chr13 101825573 101825680 -47489 + MIR3 SINE MIR 11 132 -76 226 159 0 0 chr13 101827136 101827180 -45989 - L1M1 LINE L1 -4424 3141 3098 3191 232 33 11 chr13 101827191 101828136 -45033 - L1M1 LINE L1 -4540 3025 2060 1053 127 10 10 chr13 101828232 101828429 -44740 + L1MB5 LINE L1 5590 5786 -388 663 193 57 51 chr13 101828444 101828620 -44549 + L1MB5 LINE L1 5998 6174 0 22 35 0 0 chr13 101828751 101828780 -44389 + AT_rich Low_complexity Low_complexity 1 29 0 560 239 75 5 chr13 101829013 101829214 -43955 - L1MC5 LINE L1 -777 7184 6970 1768 187 58 0 chr13 101829246 101829594 -43575 - L1MB7 LINE L1 -16 6168 5801 442 337 28 11 chr13 101829668 101829849 -43320 + MIR3 SINE MIR 16 199 -9 223 300 129 0 chr13 101830878 101831018 -42151 + L2 LINE L2 2902 3059 -213 1690 231 94 9 chr13 101832822 101833363 -39806 - LTR39 LTR ERV1 -193 590 4 501 298 0 7 chr13 101833634 101833938 -39231 + (CA)n Simple_repeat Simple_repeat 1 302 0 224 174 0 29 chr13 101833945 101834014 -39155 + (CAGA)n Simple_repeat Simple_repeat 4 70 0 189 292 0 0 chr13 101834052 101834206 -38963 + (CA)n Simple_repeat Simple_repeat 1 154 0 504 287 0 11 chr13 101834257 101834438 -38731 + (CA)n Simple_repeat Simple_repeat 2 180 0 426 297 6 11 chr13 101834454 101834684 -38485 + (CA)n Simple_repeat Simple_repeat 1 228 0 22 0 0 0 chr13 101837707 101837729 -35440 + AT_rich Low_complexity Low_complexity 1 22 0 204 245 50 172 chr13 101839625 101839927 -33242 - L2 LINE L2 -18 3254 2990 510 191 0 0 chr13 101851096 101851227 -21942 + GA-rich Low_complexity Low_complexity 1 131 0 357 355 74 16 chr13 101851229 101851471 -21698 + L1MEd LINE L1 979 1234 -4885 513 164 0 0 chr13 101851478 101851594 -21575 + GA-rich Low_complexity Low_complexity 1 116 0 243 228 76 76 chr13 101853135 101853227 -19942 - L1MB5 LINE L1 -1 6173 6082 371 298 6 22 chr13 101854928 101855109 -18060 + (TAGGG)n Simple_repeat Simple_repeat 2 179 0 369 284 23 23 chr13 101855136 101855312 -17857 + (CAGGG)n Simple_repeat Simple_repeat 4 179 0 353 289 6 36 chr13 101855322 101856276 -16893 + (TAGGG)n Simple_repeat Simple_repeat 1 925 0 350 290 11 28 chr13 101856320 101856496 -16673 + (TAGGG)n Simple_repeat Simple_repeat 2 174 0 317 218 26 0 chr13 101857342 101857420 -15749 - L1MC4 LINE L1 0 8042 7963 396 294 18 1 chr13 101857736 101857912 -15257 - L1MC4 LINE L1 -258 7597 7369 324 227 0 23 chr13 101858239 101858327 -14842 + GA-rich Low_complexity Low_complexity 3 88 0 1711 164 7 13 chr13 101861575 101861879 -11290 - AluJb SINE Alu -10 302 1 260 115 9 34 chr13 101861882 101862044 -11125 - AluJo SINE Alu -166 136 11 1994 157 0 3 chr13 101862732 101863044 -10125 - AluSx SINE Alu -1 311 1 1990 101 0 0 chr13 101863093 101863351 -9818 + AluSx SINE Alu 1 258 -54 552 350 0 3 chr13 101864452 101864795 -8374 + (TG)n Simple_repeat Simple_repeat 1 341 0 1461 131 168 24 chr13 101866342 101866670 -6499 - MSTA LTR MaLR -53 375 1 292 273 0 13 chr13 101866773 101866850 -6319 + (TGGG)n Simple_repeat Simple_repeat 1 76 0 588 168 23 38 chr13 101866851 101867358 -5811 + (TGGA)n Simple_repeat Simple_repeat 1 499 0 203 245 32 26 chr13 101867423 101867578 -5591 + (TGGA)n Simple_repeat Simple_repeat 3 158 0 277 264 31 0 chr13 101867629 101867788 -5381 + (TGGA)n Simple_repeat Simple_repeat 3 166 0 462 168 26 38 chr13 101867818 101868056 -5113 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 581 169 29 0 chr13 101868086 101868222 -4947 + (TGGA)n Simple_repeat Simple_repeat 3 142 0 281 242 31 0 chr13 101868252 101868380 -4789 + (TGGA)n Simple_repeat Simple_repeat 3 134 0 513 250 150 62 chr13 101868556 101868975 -4194 + MER63 DNA MER1_type 310 754 -306 185 345 36 12 chr13 101871792 101871876 -1293 + L3 LINE CR1 909 994 -583 2978 140 89 18 chr13 101872059 101872630 -539 + LTR10E LTR ERV1 1 612 -21 863 233 34 19 chr13 101872792 101873128 -41 + L1P5 LINE L1 5126 5466 -690